Probe Set Name Representative Public ID Gene Title Maximum fold change as signed ratio(2) Control (Average) DMSO_Treated (Average) Gene Symbol Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function Signal for B+K-dmso.CHP Signal for JMV-CONTROL.CHP Signal for R+M-CONTROL.CHP Signal for S+J DMSO.CHP Detection p-value for B+K-dmso.CHP Detection p-value for JMV-CONTROL.CHP Detection p-value for R+M-CONTROL.CHP Detection p-value for S+J DMSO.CHP Detection for B+K-dmso.CHP Detection for JMV-CONTROL.CHP Detection for R+M-CONTROL.CHP Detection for S+J DMSO.CHP FileName for B+K-dmso.CHP FileName for JMV-CONTROL.CHP FileName for R+M-CONTROL.CHP FileName for S+J DMSO.CHP Target Description UniGene ID Entrez Gene Pathway Protein Families Protein Domains Trans Membrane Transcript Assignments Annotation Notes AFFX_control cerevisiae_gene Signal for D+L-CONTROL.CHP, Fold Change as signed ratio, Signal for JMV-CONTROL.CHP, Fold Change as signed ratio, Signal for M+T DMSO.CHP, Fold Change as signed ratio, Signal for R+M-CONTROL.CHP, Fold Change as signed ratio, Signal for S+J DMSO.CHP, Fold Change as signed ratio, Maximum fold change as signed ratio filtering(2) Modulation filtering by 2.5 fold Maximum fold change as signed ratio(3) Maximum fold change as signed ratio filtering(3) Signal for B+K-dmso.CHP, Z-scores Signal for JMV-CONTROL.CHP, Z-scores Signal for R+M-CONTROL.CHP, Z-scores Signal for S+J DMSO.CHP, Z-scores Mean before Z-score normalization StdDev before Z-score normalization CV before Z-score normalization Affymetrix absence/presence calls Called_P_>2EXP Modulation filtering by 0.005 fold Modulation filtering by 2 fold Affymetrix absence/presence calls(2) Absent Count Present Count Marginal Count P>2 P>3 Binned_Present Count
1778186_at SPCC622.21.S1 --- 104.492816925049 --- --- --- --- 10.4492816925049 5.43195152282715 1.57797682285309 0.0467361062765121 0.0676269978284836 0.0805663987994194 0.567627012729645 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC622.21 /GEN=wtf12 /DEF=wtf element --- --- --- --- --- --- SPCC622.21 // |wtf12||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -39.4531413388401 -1.92366990916487 -14.6887960950276 -6.62194877717651 -104.492816925049 Max fold change at or above threshold 2 104.492816925049 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778251_at SPMIT.06.S1 --- 83.6766242980957 --- --- --- --- 8.36766242980957 1.90464043617249 4.61942911148071 3.12664818763733 0.013916015625 0.303710997104645 0.0239257998764515 0.129638999700546 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPMIT.06 /DEF=hypothetical protein --- --- --- --- --- --- SPMIT.06 // |||hypothetical protein|Schizosaccharomyces pombe|chr mitochondrial|||Manual // sanger // 11 // --- --- No No -83.6766242980957 -4.39330294101337 -5.69893996513234 -1.81140617766237 -2.6762404746703 Max fold change at or above threshold 3 83.6766242980957 Max fold change at or above threshold PAAAPA No 4 0 PAPA 2 2 0 No No 1 < x = 2
1775135_at SPCC622.05.S1 --- 82.9928302764893 --- --- --- --- 8.29928302764893 0.781918227672577 3.87819862365723 0.0624299384653568 0.303710997104645 0.466064006090164 0.274170011281967 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC622.05 /DEF=dubious --- --- --- --- --- --- SPCC622.05 // |||dubious|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.88493750232975 -10.6140037844522 -2.605543213036 -2.13998400624012 -82.9928302764893 Max fold change at or above threshold 2 82.9928302764893 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770651_at YBR296C-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 82.2977162948591 18.7065320014954 2.16168056428432 --- --- --- --- 0.329257696866989 27.0971565246582 10.3159074783325 3.99410343170166 0.870360970497131 0.000244141003349796 0.00195312988944352 0.129638999700546 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR296C-A /GEN=PHO89 /DB_XREF=GI:33438773 /SEG=NC_001134:-800079,800198 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ybr296c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028605 // YBR296C-A SGDID:S0028605, Chr II from 800236-800117, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YBR296C-A // cdna:known chromosome:SGD1:II:800117:800236:-1 gene:YBR296C-A // ensembl // 11 // --- --- No cerevisiae_gene 20.9155975418298 82.2977162948591 23.2627907808207 31.3308013039399 12.1306304141317 Max fold change at or above threshold 3 82.2977162948591 Max fold change at or above threshold -0.852744700564054 1.40618908516403 -0.00997475650834418 -0.543469628091635 10.4341062828898 11.8497934719957 1.1356788162516 APPAPA No 2 0 APPA 2 2 0 No No 1 < x = 2
1773103_at SPCC825.03c.S1 --- 75.228944599923 --- --- --- --- 13.9609460830688 3.35817861557007 2.75904417037964 0.419182598590851 0.111571997404099 0.567627012729645 0.149657994508743 0.389892578125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC825.03c /GEN=psy1 /DEF=SNARE --- --- --- --- --- --- SPCC825.03c // |psy1|sso1|SNARE|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -11.5567169987977 -4.15729705928668 -75.228944599923 -5.0600661754349 -33.3051661256951 Max fold change at or above threshold 3 75.228944599923 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776107_at YBR298C-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 74.8581195881739 349.28734588623 10.0611548423767 --- --- --- --- 7.08527278900146 530.390197753906 168.184494018555 13.037036895752 0.00195312988944352 0.000244141003349796 0.000244141003349796 0.00805663969367743 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR298C-A /GEN=MAL31 /DB_XREF=GI:33438774 /SEG=NC_001134:-804991,805212 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ybr298c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028606 // YBR298C-A SGDID:S0028606, Chr II from 805250-805029, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YBR298C-A // cdna:known chromosome:SGD1:II:805029:805250:-1 gene:YBR298C-A // ensembl // 11 // --- YGR291C // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 5.58790391801705 74.8581195881739 1.12689423586978 23.7371938988191 1.84001904852407 Max fold change at or above threshold 4 74.8581195881739 Max fold change at or above threshold -0.703247665635331 1.42906096766933 -0.0468172674894097 -0.67899603454459 179.674250364304 245.417064298935 1.36590003187064 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1778467_at SPCC548.07c.S1 --- 72.0775277604862 --- --- --- --- 13.8409690856934 4.25830173492432 1.5584979057312 1.29500925540924 0.219482004642487 0.696289002895355 0.665526986122131 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC548.07c /GEN=ght1 /DEF=hexose transporter (PMID 10735857) --- --- --- --- --- --- SPCC548.07c // |ght1||hexose transporter |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -72.0775277604862 -3.25034954009415 -2.41941794670575 -8.88096739481956 -10.6879306289741 Max fold change at or above threshold 2 72.0775277604862 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777722_at SPBC1604.18c.S1 --- 68.8305073115711 --- --- --- --- 10.4482755661011 0.322835147380829 4.01482343673706 0.151797160506248 0.24609400331974 0.904784977436066 0.166259765625 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1604.18c /DEF=SNF7 family --- --- --- --- --- --- SPBC1604.18c // |||SNF7 family class E vps |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.06718446543322 -32.3641203594721 -2.34735848516919 -2.60242467215261 -68.8305073115711 Max fold change at or above threshold 2 68.8305073115711 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-AF292559-1_at AFFX-Sc-AF292559-1 --- 67.4663380901197 --- --- --- --- 0.153466612100601 1.24048125743866 10.3538303375244 2.33043479919434 0.962401986122131 0.432372987270355 0.018554700538516 0.188720703125 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL AF292559 /FEA=CDS_1 /DB_XREF=AAG34044.1 GI:11321077 /PROD=yellow fluorescent protein yfp /GEN=yfp --- --- --- --- --- --- AFFX-Sc-AF292559-1 // --- // affx // --- // --- --- No No 31.9026170578223 8.08306927780157 10.5594194370893 67.4663380901197 15.18528862595 Max fold change at or above threshold 1 67.4663380901197 Max fold change at or above threshold AMAAPA No 4 0 AAPA 3 1 0 No No x = 1
1769983_at SPBC1709.19c.S1 --- 66.8563157255384 --- --- --- --- 7.48753499984741 1.6813770532608 3.7027587890625 0.111994430422783 0.129638999700546 0.665526986122131 0.398925989866257 0.75439453125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1709.19c /DEF=conserved NifU-like protein --- --- --- --- --- --- SPBC1709.19c // |||conserved NifU-like protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -35.1601504088746 -4.45321588356779 -11.4554643489458 -2.02215035501764 -66.8563157255384 Max fold change at or above threshold 2 66.8563157255384 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771333_at SPBC83.02c.S1 --- 66.2775547864101 --- --- --- --- 18.1836986541748 8.04257678985596 5.37500953674316 4.22848129272461 0.1884765625 0.111571997404099 0.171387001872063 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC83.02c /GEN=rpl4302 /DEF=60S ribosomal protein L37a --- --- --- --- --- --- AB005904 // Schizosaccharomyces pombe mRNA for ribosomal protein L37, complete cds. // gb // 10 // --- /// SPBC83.02c // |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein L37a|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -66.2775547864101 -2.26092944205516 -2.38146723663537 -3.38300770070684 -4.30029067066256 Max fold change at or above threshold 4 66.2775547864101 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773405_at SPAC1071.03c.S1 --- 65.5745383195508 --- --- --- --- 11.965934753418 0.662767231464386 1.52396655082703 4.11730575561523 0.194580003619194 0.919434010982513 0.696289002895355 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1071.03c /DEF=sequence orphan --- --- --- --- --- --- SPAC1071.03c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -65.5745383195508 -18.0545056927139 -3.87393464182245 -7.85183555828328 -2.90625361915342 Max fold change at or above threshold 2 65.5745383195508 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769886_s_at SPAC977.05c.S1 --- 64.3741798749794 --- --- --- --- 0.248345866799355 15.9870615005493 9.98696231842041 1.16595435142517 0.828612983226776 0.0107421996071935 0.0805663987994194 0.334473013877869 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC977.05c /DEF=hypothetical protein --- --- --- --- --- --- SPAC977.05c // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPBPB2B2.15 // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPBC1348.06c // ||SPAC1348.06c|hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 24.7038399674455 64.3741798749794 21.283582847185 40.2139260344089 4.69488124143889 Max fold change at or above threshold 2 64.3741798749794 Max fold change at or above threshold AAPMAA No 4 0 APAA 3 1 0 No No x = 1
1774370_at SPCC1672.11c.S1 --- 64.0079471448685 --- --- --- --- 11.2988834381104 10.1109609603882 5.2648138999939 0.962751984596252 0.334473013877869 0.0239257998764515 0.129638999700546 0.601073980331421 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1672.11c /DEF=P-type ATPase (predicted) (PMID 12707717) --- --- --- --- --- --- SPCC1672.11c // |||P-type ATPase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -64.0079471448685 -1.1174885831699 -2.93263600004158 -2.14611259822944 -11.7360271584885 Max fold change at or above threshold 3 64.0079471448685 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1772454_at SPAC9.10.S1 --- 60.5844458855886 --- --- --- --- 0.297373026609421 7.21116256713867 18.0161800384521 3.84315466880798 0.601073980331421 0.194580003619194 0.018554700538516 0.129638999700546 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9.10 /DEF=amino acid permease family --- --- --- --- --- --- SPAC9.10 // |||amino acid permease family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 27.2851792756256 24.2495516468279 34.6710883133733 60.5844458855886 12.9236827987621 Max fold change at or above threshold 3 60.5844458855886 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1770901_at SPBC27.05.S1 --- 60.5509901046753 --- --- --- --- 6.05509901046753 6.25400400161743 3.21159863471985 0.109228938817978 0.219482004642487 0.00415039015933871 0.149657994508743 0.696289002895355 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC27.05 /DEF=sequence orphan --- --- --- --- --- --- SPBC27.05 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.99236924179031 1.03284917237622 -60.5509901046753 -1.8853847255405 -55.4349339652371 Max fold change at or above threshold 3 60.5509901046753 Max fold change at or above threshold AAPAAA No 3 0 APAA 3 1 0 No No x = 1
1772409_at SPAC23H4.04.S1 --- 59.3617954272999 --- --- --- --- 10.585467338562 8.76851654052734 8.02944087982178 0.696745991706848 0.171387001872063 0.0676269978284836 0.194580003619194 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H4.04 /DEF=tRNA methyltransferase (predicted) --- --- --- --- --- --- SPAC23H4.04 // |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -59.3617954272999 -1.20721302054194 -1.62046859225962 -1.31833181126766 -15.1927208258929 Max fold change at or above threshold 3 59.3617954272999 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775240_at SPCC663.13c.S1 --- 58.8243210675641 --- --- --- --- 8.88916015625 8.53903007507324 4.92786502838135 2.57249307632446 0.0561522990465164 0.06494140625 0.171387001872063 0.219482004642487 M M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC663.13c /DEF=N-acetyltransferase (predicted) --- --- --- --- --- --- SPCC663.13c // |||N-acetyltransferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.80719824616367 -1.04100349549053 -58.8243210675641 -1.80385625520466 -3.45546514315626 Max fold change at or above threshold 4 58.8243210675641 Max fold change at or above threshold MAMAAA No 4 0 MMAA 2 0 2 No No x = 1
1771409_at SPAC23H3.07c.S1 --- 58.4856167385839 --- --- --- --- 13.9613151550293 1.64700603485107 3.85608506202698 3.66916084289551 0.303710997104645 0.805419981479645 0.567627012729645 0.5927734375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H3.07c /GEN=mrp2 /DEF=mitochondrial ribosomal protein subunit s14 --- --- --- --- --- --- SPAC23H3.07c // |mrp2||mitochondrial ribosomal protein subunit S14|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -58.4856167385839 -8.47678445591835 -28.6153090412939 -3.62059314834991 -3.80504310190222 Max fold change at or above threshold 3 58.4856167385839 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778643_at SPAPYUG7.04c.S1 --- 58.3600260344997 --- --- --- --- 6.39869165420532 2.8340630531311 2.8209969997406 0.109641686081886 0.0561522990465164 0.567627012729645 0.696289002895355 0.932372987270355 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPYUG7.04c /GEN=rpb9 /DEF=DNA-directed RNA polymerase (II subunit) (PMID 9852944) --- --- --- --- --- --- SPAPYUG7.04c // |rpb9||DNA-directed RNA polymerase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -15.2433676222694 -2.25778027314388 -23.6753951376579 -2.26823766731893 -58.3600260344997 Max fold change at or above threshold 3 58.3600260344997 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1774381_at SPBC947.11c.S1 --- 56.8818351137594 --- --- --- --- 8.73721218109131 2.61122512817383 3.74385142326355 4.48780250549316 0.171387001872063 0.366210997104645 0.334473013877869 0.00195312988944352 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC947.11c /DEF=replication factor C complex (predicted) (ISS) --- --- --- --- --- --- SPBC947.11c // |elg11||DNA replication factor C complex subunit Elg11 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -56.8818351137594 -3.34602025954067 -2.35452953579693 -2.33374971207458 -1.94687983047311 Max fold change at or above threshold 4 56.8818351137594 Max fold change at or above threshold AAAAAP No 3 0 AAAP 3 1 0 No No x = 1
1773192_at SPBC725.17c.S1 --- 56.8411384858589 --- --- --- --- 9.82861328125 4.38269233703613 2.96787309646606 1.42110598087311 0.111571997404099 0.466064006090164 0.432372987270355 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC725.17c /DEF=RNA polymerase I component (predicted) --- --- --- --- --- --- SPBC725.17c // |rrn11||RNA polymerase I component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.97567915003512 -2.24259713559925 -56.8411384858589 -3.31166898374234 -6.91617192069759 Max fold change at or above threshold 3 56.8411384858589 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779391_at SPBC405.04c.S1 --- 56.8197834624911 --- --- --- --- 7.38662576675415 0.631548941135406 0.738713562488556 0.130000948905945 0.334473013877869 0.5 0.665526986122131 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC405.04c /GEN=ypt7 /DEF=GTPase --- --- --- --- --- --- SPBC405.04c // |ypt7||GTPase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.42840056502077 -11.6960464749959 -2.50156714551175 -9.99930980266601 -56.8197834624911 Max fold change at or above threshold 1 56.8197834624911 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777702_at SPAC1F12.03c.S1 --- 56.3602758922743 --- --- --- --- 7.04116201400757 2.7219443321228 3.41066646575928 0.124931290745735 0.129638999700546 0.366210997104645 0.00122069998178631 0.919434010982513 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F12.03c /DEF=sequence orphan --- --- --- --- --- --- SPAC1F12.03c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -9.25866662486603 -2.58681337855145 -9.476489651365 -2.06445340953035 -56.3602758922743 Max fold change at or above threshold 3 56.3602758922743 Max fold change at or above threshold AAAAPA No 3 0 AAPA 3 1 0 No No x = 1
1774892_at YOL166W-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /// --- /// Identified by fungal homology and RT-PCR 56.1749076843262 0.0543233640491962 3.06252548098564 --- --- --- --- 5.61749076843262 0.072199359536171 0.0364473685622215 0.507560193538666 0.0239257998764515 0.901611328125 0.753906011581421 0.49169921875 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL166W-A /DB_XREF=GI:33438872 /SEG=NC_001147:+585,740 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Yol166w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028709 // span:26-48 // numtm:1 S0028709 // YOL166W-A SGDID:S0028709, Chr XV from 585-740, Uncharacterized ORF // sgd // 11 // --- /// YOL166W-A // cdna:known chromosome:SGD1:XV:585:740:1 gene:YOL166W-A // ensembl // 11 // --- --- No cerevisiae_gene -12.0201462683362 -56.1749076843262 -56.1749076843262 -56.1749076843262 -11.0676346174194 Max fold change at or above threshold 1 56.1749076843262 Max fold change at or above threshold 1.49532461719842 -0.547512342489697 -0.560683063946616 -0.387129210762103 1.55842442251742 2.71450513101303 1.7418266114106 PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1777098_at SPAC17A5.15c.S1 --- 55.8231517148353 --- --- --- --- 0.245001226663589 13.6767406463623 1.62406659126282 0.980559349060059 0.932372987270355 0.432372987270355 0.633789002895355 0.747314453125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A5.15c /DEF=glutamate-tRNA ligase (predicted) --- --- --- --- --- --- SPAC17A5.15c // |||glutamate-tRNA ligase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.73704374849545 55.8231517148353 2.44438056912906 6.62881004058326 4.00226301889689 Max fold change at or above threshold 1 55.8231517148353 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777108_at SPAC1A6.04c.S1 --- 54.8591158049544 --- --- --- --- 13.0201139450073 7.06138801574707 9.64182758331299 2.04431080818176 0.0561522990465164 0.303710997104645 0.219482004642487 0.334473013877869 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1A6.04c /GEN=plb1 /DEF=lysophospholipase (predicted) --- --- --- --- --- --- AY235223 // Schizosaccharomyces pombe phospholipase B-like protein (plb1) mRNA, complete cds. // gb // 11 // --- /// D89204 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1114. // gb // 11 // --- /// AB005603 // Schizosaccharomyces pombe mRNA for phospholipase B, partial cds. // gb // 11 // --- /// SPAC1A6.04c // |plb1||phospholipase B homolog Plb1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -54.8591158049544 -1.84384626874662 -1.42908946723455 -1.35037821745963 -6.36895030486464 Max fold change at or above threshold 3 54.8591158049544 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1772305_at SPBC19G7.04.S1 --- 54.5456348721949 --- --- --- --- 7.89029741287231 6.29308271408081 0.560060858726501 2.83307003974915 0.0561522990465164 0.24609400331974 0.888427972793579 0.219482004642487 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19G7.04 /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPBC19G7.04 // |||transcriptional regulator |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -54.5456348721949 -1.25380481575711 -3.66452083682824 -14.08828574597 -2.78506966018071 Max fold change at or above threshold 3 54.5456348721949 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1776252_at SPCC188.10c.S1 --- 54.2358086778342 --- --- --- --- 17.4046440124512 0.3209068775177 0.381988376379013 1.28568351268768 0.111571997404099 0.932372987270355 0.850341975688934 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC188.10c /DEF=pseudo --- --- --- --- --- --- SPCC188.10c // ||SPCC584.07c|pseudo|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -39.0959602829891 -54.2358086778342 -11.7445193792844 -45.5632817349973 -13.537269351823 Max fold change at or above threshold 1 54.2358086778342 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770491_at SPBC18E5.14c.S1 --- 54.2202667324409 --- --- --- --- 9.87929534912109 0.599898278713226 3.9850811958313 2.36126232147217 0.129638999700546 0.904784977436066 0.111571997404099 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18E5.14c /DEF=hypothetical protein --- --- --- --- --- --- SPBC18E5.14c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -54.2202667324409 -16.4682842069693 -27.2766034688553 -2.47907002734489 -4.18390420212257 Max fold change at or above threshold 2 54.2202667324409 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-Scv2-r2-Bs-thr-5_s_at AFFX-Scv2-r2-Bs-thr-5 --- 53.3537762382889 --- --- --- --- 12.7568883895874 0.86311274766922 9.68237209320068 5.90707588195801 0.149657994508743 0.725830018520355 0.432372987270355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=thrC /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 290-888 of gb:X04603.1 /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase. --- --- --- --- --- --- AFFX-Scv2-r2-Bs-thr-5 // --- // affx // --- // --- --- AFFX_control No -53.3537762382889 -14.7800949806807 -34.9431684108313 -1.31753750700675 -2.15959446679038 Max fold change at or above threshold 3 53.3537762382889 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779776_at SPCC285.12.S1 --- 53.105125266132 --- --- --- --- 0.222202718257904 3.9231288433075 11.800103187561 6.45055198669434 0.95166015625 0.525390625 0.0461426004767418 0.0239257998764515 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC285.12 /GEN=lsm7 /DEF=U6 snRNA-associated protein --- --- --- --- --- --- SPCC285.12 // |lsm7||U6 snRNA-associated protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 22.7094523709188 17.6556293913292 11.3290680678326 53.105125266132 29.030031843298 Max fold change at or above threshold 3 53.105125266132 Max fold change at or above threshold APAAPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1769547_at SPBC543.10.S1 --- 53.0716991567571 --- --- --- --- 8.83082866668701 0.166394308209419 7.06848430633545 2.04650282859802 0.14453125 0.976073980331421 0.0805663987994194 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC543.10 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC543.10 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -21.8861731306119 -53.0716991567571 -7.75303686520867 -1.2493242234084 -4.31508256098364 Max fold change at or above threshold 2 53.0716991567571 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771601_at SPBC1703.08c.S1 --- 52.777770740359 --- --- --- --- 9.21338367462158 7.05716943740845 0.823030650615692 0.590484738349915 0.0375977009534836 0.432372987270355 0.850341975688934 0.943848013877869 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1703.08c /DEF=5-formyltetrahydrofolate cyclo-ligase activity (predicted) --- --- --- --- --- --- SPBC1703.08c // |||5-formyltetrahydrofolate cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -41.1447900676444 -1.30553527959574 -52.777770740359 -11.1944599726988 -15.6030851878882 Max fold change at or above threshold 2 52.777770740359 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1776547_at SPBC13A2.01c.S1 --- 52.5909615540199 --- --- --- --- 7.89445543289185 8.5850658416748 0.150110498070717 2.73360443115234 0.334473013877869 0.274170011281967 0.805419981479645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13A2.01c /DEF=nuclear cap-binding complex (small subunit) --- --- --- --- --- --- SPBC13A2.01c // |||nuclear cap-binding complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.99348656141219 1.08748043670062 -14.4987758134989 -52.5909615540199 -2.887928971334 Max fold change at or above threshold 3 52.5909615540199 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777229_at SPBC216.04c.S1 --- 52.3655552461011 --- --- --- --- 15.1349534988403 3.44379210472107 4.02412748336792 0.289024978876114 0.129638999700546 0.533936023712158 0.533936023712158 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC216.04c /DEF=methionine sulfoxide (predicted) (PMID 11929995) --- --- --- --- --- --- SPBC216.04c // |||methionine sulfoxide |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.10320639615157 -4.39485109397049 -8.85753161134471 -3.76105219364805 -52.3655552461011 Max fold change at or above threshold 3 52.3655552461011 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777236_at SPCC16A11.02.S1 --- 52.1716761527347 --- --- --- --- 7.4711742401123 1.72931253910065 4.78209447860718 2.57376861572266 0.171387001872063 0.845458984375 0.567627012729645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16A11.02 /DEF=WD repeat protein --- --- --- --- --- --- SPCC16A11.02 // ||SPCC63.16|U Three Protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -52.1716761527347 -4.32031461704302 -2.55385088072814 -1.56232259181302 -2.90281503724629 Max fold change at or above threshold 3 52.1716761527347 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769340_at SPAC24C9.16c.S1 --- 52.0065267102803 --- --- --- --- 10.1576557159424 1.11304950714111 6.73221492767334 1.14925932884216 0.129638999700546 0.888427972793579 0.303710997104645 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24C9.16c /GEN=cox8 /DEF=cytochrome c oxidase subunit VIII --- --- --- --- --- --- SPAC24C9.16c // |cox8||cytochrome c oxidase subunit VIII|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -52.0065267102803 -9.12596937582093 -4.49056759688635 -1.50881334376128 -8.83843660088089 Max fold change at or above threshold 2 52.0065267102803 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777025_at SPAC3C7.13c.S1 --- 51.7862194760343 --- --- --- --- 16.5983963012695 6.22048473358154 13.671480178833 5.06262397766113 0.0561522990465164 0.0239257998764515 0.0461426004767418 0.274170011281967 M P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3C7.13c /DEF=glucose-6-phosphate 1-dehydrogenase (predicted) --- --- --- --- --- --- SPAC3C7.13c // |||glucose-6-phosphate 1-dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -51.7862194760343 -2.66834451207032 -1.57921785495355 -1.21408919035469 -3.27861527431428 Max fold change at or above threshold 4 51.7862194760343 Max fold change at or above threshold MAPPPA No 4 0 MPPA 1 2 1 No No 1 < x = 2
1773860_at SPBCPT2R1.06c.S1 --- 51.7485550476704 --- --- --- --- 13.1355123519897 4.4277229309082 6.19383382797241 5.42855310440063 0.0461426004767418 0.398925989866257 0.171387001872063 0.171387001872063 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBCPT2R1.06c /DEF=pseudogene --- --- --- --- --- --- SPBCPT2R1.06c // |||pseudogene|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.4626425183079 -2.96665183367637 -51.7485550476704 -2.12074019368546 -2.41970781152376 Max fold change at or above threshold 4 51.7485550476704 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1778636_at SPAC6F6.09.S1 --- 51.6843871227125 --- --- --- --- 11.6698875427246 0.225791350007057 0.801888644695282 0.719651401042938 0.0561522990465164 0.943848013877869 0.850341975688934 0.870360970497131 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F6.09 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC6F6.09 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -40.2138164539653 -51.6843871227125 -4.14425622340468 -14.5530026144206 -16.2160283795909 Max fold change at or above threshold 1 51.6843871227125 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1774865_at SPCPB16A4.04c.S1 --- 51.4184882971343 --- --- --- --- 16.2261352539063 2.99908208847046 1.04043138027191 1.14674055576324 0.0561522990465164 0.466064006090164 0.601073980331421 0.466064006090164 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCPB16A4.04c /DEF=methyltransferase (predicted) --- --- --- --- --- --- SPCPB16A4.04c // |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -51.4184882971343 -5.41036716410174 -4.7100652749447 -15.595584256278 -14.1497875629824 Max fold change at or above threshold 2 51.4184882971343 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1774619_at SPAC15F9.03c.S1 --- 49.4747985988683 --- --- --- --- 9.2576265335083 7.90320634841919 3.7329249382019 0.471375524997711 0.0676269978284836 0.111571997404099 0.125 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15F9.03c /GEN=nxt2 /DEF=NTF2 domain --- --- --- --- --- --- SPAC15F9.03c // |nxt2|ntf2, nft2, SPAC1B9.01c|NTF2 domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -49.4747985988683 -1.17137603719028 -5.12329680790952 -2.4799926831552 -19.6395995179284 Max fold change at or above threshold 3 49.4747985988683 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779210_at SPCC550.03c.S1 --- 49.1414979033433 --- --- --- --- 5.40671110153198 1.61888682842255 1.7440938949585 0.110023327171803 0.0952147990465164 0.466064006090164 0.24609400331974 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC550.03c /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPCC550.03c // |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.94011224515986 -3.33977088861753 -11.3808596624419 -3.10001148284545 -49.1414979033433 Max fold change at or above threshold 1 49.1414979033433 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779222_at SPAC4G9.14.S1 --- 48.9919766663138 --- --- --- --- 9.8195629119873 7.22967672348022 4.71753120422363 5.06620645523071 0.0952147990465164 0.303710997104645 0.111571997404099 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G9.14 /DEF=localization peroxisomal membrane (predicted) --- --- --- --- --- --- SPAC4G9.14 // |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.58847935205044 -1.35822987493974 -48.9919766663138 -2.08150460206724 -1.93824768073731 Max fold change at or above threshold 4 48.9919766663138 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773146_at SPBP8B7.09c.S1 --- 48.9069013084522 --- --- --- --- 5.82613706588745 0.348060339689255 1.62507307529449 0.119127094745636 0.274170011281967 0.805419981479645 0.633789002895355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.09c /DEF=exportin t --- --- --- --- --- --- SPBP8B7.09c // |||exportin t|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -33.5869578102893 -16.7388708265037 -8.64381113679148 -3.58515389520662 -48.9069013084522 Max fold change at or above threshold 1 48.9069013084522 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769433_at SPCP25A2.03.S1 --- 48.5478747940692 --- --- --- --- 0.13386607170105 2.6132607460022 2.17755746841431 3.7010452747345 0.904784977436066 0.129638999700546 0.5 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP25A2.03 /DEF=vertebrate p84 (retinoblastoma binding) orthologue --- --- --- --- --- --- SPCP25A2.03 // |||vertebrate p84 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 48.5478747940692 19.5214568769758 17.6574415601763 16.2666868515962 27.647373436039 Max fold change at or above threshold 2 48.5478747940692 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776486_at SPBC8D2.02c.S1 --- 48.4784134159276 --- --- --- --- 0.146481782197952 7.10120439529419 4.99035787582397 1.16932237148285 0.567627012729645 0.129638999700546 0.0107421996071935 0.432372987270355 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8D2.02c /DEF=conserved fungal protein --- --- --- --- --- --- SPBC8D2.02c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 46.0644514174954 48.4784134159276 39.3944765868048 34.0681127778751 7.98271535161043 Max fold change at or above threshold 2 48.4784134159276 Max fold change at or above threshold APAAPA No 4 0 AAPA 3 1 0 No No x = 1
1770950_at SPBC13E7.04.S1 --- 48.2977189464231 --- --- --- --- 14.6838979721069 6.58247566223145 6.5837345123291 4.98835515975952 0.0107421996071935 0.030273400247097 0.194580003619194 0.0676269978284836 P P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13E7.04 /GEN=atp16 /DEF=F1-ATPase delta subunit predicted --- --- --- --- --- --- SPBC13E7.04 // |atp16||F1-ATPase delta subunit predicted|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -48.2977189464231 -2.23075613577417 -3.34636001011481 -2.23032960162792 -2.94363522680988 Max fold change at or above threshold 4 48.2977189464231 Max fold change at or above threshold PAPAAA No 4 0 PPAA 2 2 0 No No 1 < x = 2
1771254_at SPBC1921.01c.S1 --- 47.5791663239146 --- --- --- --- 0.412288367748261 19.6163368225098 13.4614372253418 6.30262327194214 0.780517995357513 0.194580003619194 0.219482004642487 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1921.01c /GEN=rpl3701 /DEF=60S ribosomal protein L37 --- --- --- --- --- --- SPBC1921.01c // |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 12.8066310339478 47.5791663239146 25.6171041676576 32.6505385026075 15.2869296467526 Max fold change at or above threshold 3 47.5791663239146 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769825_at SPAC186.06.S1 --- 47.5585849127007 --- --- --- --- 0.176711603999138 0.944195985794067 2.25256061553955 5.71180725097656 0.969726979732513 0.850341975688934 0.633789002895355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC186.06 /DEF=hypothetical protein --- --- --- --- --- --- SPAC186.06 // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 14.5434606791599 5.34314648515484 47.5585849127007 12.747100725488 32.3227627485314 Max fold change at or above threshold 1 47.5585849127007 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778522_at SPBC3F6.02c.S1 --- 47.4281682551062 --- --- --- --- 13.9753580093384 8.2891149520874 2.01252436637878 1.63533854484558 0.129638999700546 0.274170011281967 0.718505859375 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3F6.02c /DEF=3 beta-hydroxysteroid dehydrogenasedelta 5-->4-isomerase (predicted) --- --- --- --- --- --- SPBC3F6.02c // |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-isomerase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -47.4281682551062 -1.68598916652966 -1.09483236449304 -6.94419319478094 -8.54585006473875 Max fold change at or above threshold 2 47.4281682551062 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777734_at SPAC11D3.15.S1 --- 47.2978724397894 --- --- --- --- 5.35751914978027 2.87392568588257 0.625359356403351 0.11327188462019 0.165771484375 0.533936023712158 0.753906011581421 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11D3.15 /DEF=oxoprolinase (predicted) --- --- --- --- --- --- SPAC11D3.15 // |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.51990347938648 -1.86418151871419 -24.4745590523229 -8.5671048092942 -47.2978724397894 Max fold change at or above threshold 2 47.2978724397894 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769898_at SPBC16H5.10c.S1 --- 47.2759772796175 --- --- --- --- 0.176992908120155 6.56559610366821 0.578331172466278 8.36751270294189 0.98486328125 0.212890625 0.962401986122131 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16H5.10c /GEN=prp43 /DEF=RNA helicase --- --- --- --- --- --- SPBC16H5.10c // |prp43||pre-mRNA processing RNA helicase Prp43|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 15.1689136188853 37.0952495972947 2.13515137029244 3.26753867490366 47.2759772796175 Max fold change at or above threshold 2 47.2759772796175 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780253_at SPCC790.02.S1 --- 46.502741226427 --- --- --- --- 0.223729982972145 10.4040575027466 0.599006116390228 0.689961373806 0.941162109375 0.303710997104645 0.665526986122131 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC790.02 /GEN=pep3 /DEF=zinc finger protein --- --- --- --- --- --- SPCC790.02 // |pep3|vps18|zinc finger protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.03481142766562 46.502741226427 17.170036095673 2.67736182890072 3.08390214239591 Max fold change at or above threshold 1 46.502741226427 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774623_at SPAC29B12.13.S1 --- 46.4382017692513 --- --- --- --- 4.82344245910645 0.10386798530817 0.501008033752441 1.49867820739746 0.171387001872063 0.5 0.633789002895355 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29B12.13 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC29B12.13 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -15.0299923098546 -46.4382017692513 -1.36016792382516 -9.62747527815055 -3.21846440102884 Max fold change at or above threshold 1 46.4382017692513 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770123_at YJL218W.S1 Hypothetical protein 46.3714728817193 187.324440002441 12.2767677307129 --- --- --- 16407 // acetyltransferase activity // inferred from sequence similarity 4.555419921875 163.407348632813 211.24153137207 19.9981155395508 0.780517995357513 0.0239257998764515 0.014160200022161 0.432372987270355 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL218W /GEN=HXT9 /DB_XREF=GI:6322243 /SEG=NC_001142:+21973,22563 /DEF=Hypothetical ORF /NOTE=Yjl218wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: acetyltransferase activity [goid GO:0016407] [evidence ISS] [pmid 10592175]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003754 // YJL218W SGDID:S0003754, Chr X from 21973-22563, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000023974 // cdna:Genscan chromosome:SGD1:X:21973:22563:1 // ensembl // 10 // --- /// GENEFINDER00000024523 // cdna:GeneFinder chromosome:SGD1:X:21973:22563:1 // ensembl // 10 // --- /// YJL218W // cdna:known chromosome:SGD1:X:21973:22563:1 gene:YJL218W // ensembl // 10 // --- --- No cerevisiae_gene 13.0809688019186 35.8709737928078 4.77008162950855 46.3714728817193 4.38996094378048 Max fold change at or above threshold 4 46.3714728817193 Max fold change at or above threshold -0.923579767449322 0.616786068401264 1.08062771939856 -0.773834020350505 99.8006038665771 103.126104860161 1.03332145162198 APPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1776002_s_at YLR156W.S1 Note: YLR156W, YLR159W, and YLR161W are identical. /// Note: YLR156W, YLR159W, and YLR161W are identical. /// Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /// Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /// YLR156W, YLR159W, and YLR161W are three identical open reading frames encoded near the ribosomal DNA region of chromosome 12. 46.2884960645493 333.260452270508 13.4260368347168 --- --- --- --- 7.85097885131836 363.410003662109 303.110900878906 19.0010948181152 0.0239257998764515 0.000244141003349796 0.000244141003349796 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR156W /GEN=ASP3-1 /DB_XREF=GI:26225099 /SEG=NC_001144:+472114,472458 /DEF=YLR156W, YLR159W, and YLR161W are three identical open reading frames encoded near the ribosomal DNA region of chromosome 12. /NOTE=Ylr156wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004146 // YLR156W SGDID:S0004146, Chr XII from 472114-472458, Uncharacterized ORF // sgd // 10 // --- /// S0028677 // YLR157W-A SGDID:S0028677, Chr XII from 475765-475977, Uncharacterized ORF // sgd // 10 // --- /// S0004149 // YLR159W SGDID:S0004149, Chr XII from 485346-485690, Uncharacterized ORF // sgd // 10 // --- /// S0004151 // YLR161W SGDID:S0004151, Chr XII from 488998-489342, Uncharacterized ORF // sgd // 10 // --- /// YLR156W // cdna:known chromosome:SGD1:XII:472114:472458:1 gene:YLR156W // ensembl // 10 // --- /// YLR157W-A // cdna:known chromosome:SGD1:XII:475765:475977:1 gene:YLR157W-A // ensembl // 10 // --- /// YLR159W // cdna:known chromosome:SGD1:XII:485346:485690:1 gene:YLR159W // ensembl // 10 // --- /// YLR161W // cdna:known chromosome:SGD1:XII:488998:489342:1 gene:YLR161W // ensembl // 10 // --- --- No cerevisiae_gene 1.82494228863989 46.2884960645493 2.35967089826621 38.6080394074692 2.42021984493367 Max fold change at or above threshold 4 46.2884960645493 Max fold change at or above threshold -0.888092552490615 1.01996835033876 0.696381118774194 -0.828256916622336 173.343244552612 186.345742048144 1.07501011954109 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1773818_at SPAC824.07.S1 --- 46.164730226031 --- --- --- --- 11.1117820739746 2.49221062660217 1.161013007164 1.16361427307129 0.334473013877869 0.633789002895355 0.725830018520355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC824.07 /DEF=hydroxyacylglutathione hydrolase (predicted) --- --- --- --- --- --- SPAC824.07 // |||hydroxyacylglutathione hydrolase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -46.164730226031 -4.45860472440252 -12.1218381989914 -9.57076450083646 -9.54936900580098 Max fold change at or above threshold 1 46.164730226031 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770980_at SPBC29A10.16c.S1 --- 45.7885426027153 --- --- --- --- 8.41292572021484 1.64227032661438 8.91644668579102 0.544205605983734 0.014160200022161 0.5 0.018554700538516 0.780517995357513 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A10.16c /DEF=cytochrome b5 (predicted) --- --- --- --- --- --- SPBC29A10.16c // |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -45.7885426027153 -5.12274111263917 -9.21099126105681 1.05985087498946 -15.4590941874022 Max fold change at or above threshold 2 45.7885426027153 Max fold change at or above threshold PAAAPA No 4 0 PAPA 2 2 0 No No 1 < x = 2
1778538_at SPCC594.01.S1 --- 45.7229451047923 --- --- --- --- 6.81309986114502 1.33932662010193 0.26921808719635 0.149008333683014 0.0107421996071935 0.601073980331421 0.533936023712158 0.432372987270355 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC594.01 /DEF=hypothetical protein --- --- --- --- --- --- SPCC594.01 // ||SPCC736.16|sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.12593360178077 -5.08695919194566 -1.45700302574699 -25.3069915624799 -45.7229451047923 Max fold change at or above threshold 1 45.7229451047923 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1780135_at SPBC685.02.S1 --- 45.4113347822282 --- --- --- --- 9.80520057678223 0.215919673442841 7.01106309890747 3.27521109580994 0.194580003619194 0.828612983226776 0.0952147990465164 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC685.02 /DEF=conserved protein --- --- --- --- --- --- SPBC685.02 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.37751225378546 -45.4113347822282 -5.40612556762949 -1.39853263883906 -2.99376140650179 Max fold change at or above threshold 3 45.4113347822282 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773069_at SPBC146.07.S1 --- 45.0339124493297 --- --- --- --- 0.132814198732376 5.9811429977417 3.98781251907349 0.961775243282318 0.82275390625 0.0805663987994194 0.0676269978284836 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC146.07 /GEN=prp2 /DEF=U2AF large subunit (U2AF-59) --- --- --- --- --- --- SPBC146.07 // |prp2|mis11|U2AF large subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.29663311470404 45.0339124493297 3.11751204138669 30.0254984567503 7.24150920957118 Max fold change at or above threshold 2 45.0339124493297 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774783_at SPBC428.19c.S1 --- 44.9598170964856 --- --- --- --- 0.241855293512344 10.8737697601318 4.24326372146606 0.448428273200989 0.850341975688934 0.194580003619194 0.194580003619194 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC428.19c /DEF=WD repeat protein --- --- --- --- --- --- SPBC428.19c // |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.84805436435816 44.9598170964856 1.99232907352849 17.5446386136241 1.85411808312602 Max fold change at or above threshold 2 44.9598170964856 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773274_at SPBP23A10.09.S1 --- 44.7896244648168 --- --- --- --- 13.0257720947266 1.40623736381531 0.290821194648743 0.853474974632263 0.0239257998764515 0.567627012729645 0.696289002895355 0.633789002895355 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP23A10.09 /DEF=GINS complex (predicted) --- --- --- --- --- --- SPBP23A10.09 // |||GINS complex subunit Psf1 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.22732723973088 -9.26285450088307 -6.74913866222539 -44.7896244648168 -15.2620433895428 Max fold change at or above threshold 1 44.7896244648168 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1779833_at SPCC1259.12c.S1 --- 44.4736688226562 --- --- --- --- 0.189596772193909 1.66815304756165 8.43206405639648 2.10962986946106 0.904784977436066 0.5927734375 0.219482004642487 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1259.12c /DEF=SPRY domain --- --- --- --- --- --- SPCC1259.12c // |||SPRY domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.95721109017368 8.79842535428585 1.89294873850406 44.4736688226562 11.1269292459444 Max fold change at or above threshold 1 44.4736688226562 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776008_at SPAC4G9.02.S1 --- 44.11433642076 --- --- --- --- 5.79302167892456 0.570675790309906 4.22521734237671 0.131318345665932 0.274170011281967 0.888427972793579 0.432372987270355 0.86572265625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G9.02 /DEF=ribonuclease H --- --- --- --- --- --- SPAC4G9.02 // |||ribonuclease H|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -12.2193434471827 -10.1511607418613 -1.38938841094347 -1.37105886147527 -44.11433642076 Max fold change at or above threshold 2 44.11433642076 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775652_at SPCC1672.04c.S1 --- 44.0653706631454 --- --- --- --- 6.01891279220581 0.50073903799057 0.136590540409088 0.43552353978157 0.828612983226776 0.850341975688934 0.985840022563934 0.71826171875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1672.04c /DEF=CHCH domain --- --- --- --- --- --- SPCC1672.04c // |||mitochondrial copper ion transport protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -17.2398951817869 -12.0200590238765 -5.11852783539058 -44.0653706631454 -13.8199482747236 Max fold change at or above threshold 1 44.0653706631454 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775796_at SPBC2F12.09c.S1 --- 43.7640999458626 --- --- --- --- 7.08903360366821 0.585505187511444 0.992859661579132 0.161982849240303 0.366210997104645 0.567627012729645 0.665526986122131 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2F12.09c /GEN=atf21 /DEF=transcription factor --- --- --- --- --- --- SPBC2F12.09c // |atf21||transcription factor Atf21|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.35141457060231 -12.107550462189 -2.22187564217815 -7.14001573232735 -43.7640999458626 Max fold change at or above threshold 1 43.7640999458626 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774155_at SPAC25B8.14.S1 --- 43.6976005622255 --- --- --- --- 0.197104096412659 8.61297607421875 3.16104865074158 2.75520300865173 0.98046875 0.194580003619194 0.533936023712158 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25B8.14 /GEN=mal2 /DEF=involved in genome stability (required) --- --- --- --- --- --- SPAC25B8.14 // |mal2||kinetochore protein Mal2p |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 20.0421644957237 43.6976005622255 3.09075382130107 16.0374579132216 13.9784157650555 Max fold change at or above threshold 3 43.6976005622255 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770608_at SPAC9G1.13c.S1 --- 43.4940476956342 --- --- --- --- 7.20317888259888 0.222228735685349 7.85744619369507 0.165612980723381 0.171387001872063 0.870360970497131 0.0805663987994194 0.900634765625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9G1.13c /DEF=Myb family --- --- --- --- --- --- SPAC9G1.13c // |||Myb family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.44574220992618 -32.4133549173307 -2.08835344085949 1.09083035722974 -43.4940476956342 Max fold change at or above threshold 2 43.4940476956342 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776395_at SPBC25H2.15.S1 --- 43.2687030098091 --- --- --- --- 5.35784864425659 6.18663120269775 1.56820380687714 0.12382734566927 0.432372987270355 0.303710997104645 0.601073980331421 0.981445014476776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25H2.15 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC25H2.15 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -24.0429945088012 1.15468569821015 -6.65454183380484 -3.41655122934947 -43.2687030098091 Max fold change at or above threshold 2 43.2687030098091 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779867_at SPAC6F12.08c.S1 --- 43.2172905079454 --- --- --- --- 6.87122631072998 5.50787687301636 1.93645310401917 0.317862898111343 0.0676269978284836 0.129638999700546 0.633789002895355 0.865234375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F12.08c /DEF=sequence orphan --- --- --- --- --- --- SPAC6F12.08c // |||exocyst complex subunit|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -43.2172905079454 -1.24752721768215 -6.74790892761794 -3.54835668184711 -21.6169497967739 Max fold change at or above threshold 2 43.2172905079454 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776723_at SPBC409.16c.S1 --- 42.8996524955231 --- --- --- --- 6.62222480773926 0.846555054187775 4.45298767089844 0.154365465044975 0.194580003619194 0.358154296875 0.0771484375 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC409.16c /DEF=dubious --- --- --- --- --- --- SPBC409.16c // |||dubious|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -19.8220632448774 -7.82255657795693 -1.94823800473487 -1.48714195887346 -42.8996524955231 Max fold change at or above threshold 2 42.8996524955231 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779189_at SPBC1289.02c.S1 --- 42.4625776353467 --- --- --- --- 7.33852005004883 3.00571155548096 4.67693614959717 0.207637056708336 0.398925989866257 0.828612983226776 0.725830018520355 0.989257991313934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1289.02c /GEN=uap2 /DEF=U2 snRNA-associated protein --- --- --- --- --- --- SPBC1289.02c // |uap2||U2 snRNA-associated protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -42.4625776353467 -2.44152504809283 -1.26506712997137 -1.56908707224513 -35.3430171202875 Max fold change at or above threshold 3 42.4625776353467 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Sp-SRB4-3_at AFFX-r2-Sp-SRB4-3 --- 42.173376083374 --- --- --- --- 4.2173376083374 0.21316397190094 0.111034788191319 0.0863425508141518 0.129638999700546 0.5 0.753906011581421 0.525634765625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=SRB4 RNA polymerase II holoenzyme component (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPBC31F10.04c // |srb4||RNA polymerase II holoenzyme component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- AFFX_control No -2.94094157436043 -19.784476573261 -3.05379130084999 -37.9821286376547 -42.173376083374 Max fold change at or above threshold 1 42.173376083374 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778618_at SPAC2F3.18c.S1 --- 41.9339006565921 --- --- --- --- 12.9477605819702 8.31243419647217 0.308765947818756 5.58987951278687 0.0676269978284836 0.111571997404099 0.567627012729645 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F3.18c /DEF=dubious --- --- --- --- --- --- SPAC2F3.18c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- AB084860 // gb // 7 // Cross Hyb Matching Probes /// SPNCRNA.48 // sanger // 7 // Cross Hyb Matching Probes No No -2.25581245038253 -1.55763766376223 -2.0931016056961 -41.9339006565921 -2.31628616544456 Max fold change at or above threshold 3 41.9339006565921 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770544_at SPAC212.02.S1 --- 41.8728590011597 --- --- --- --- 4.18728590011597 0.116088174283504 0.185288041830063 1.04588210582733 0.171387001872063 0.985840022563934 0.919434010982513 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC212.02 /DEF=hypothetical protein --- --- --- --- --- --- SPAC212.02 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -41.8728590011597 -36.0698746961943 -41.8728590011597 -22.5987919066916 -4.00359263896543 Max fold change at or above threshold 1 41.8728590011597 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773374_at SPBC1539.08.S1 --- 41.8610562528572 --- --- --- --- 0.325171589851379 2.11279988288879 13.6120262145996 3.44936728477478 0.981445014476776 0.432372987270355 0.0461426004767418 0.466064006090164 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1539.08 /DEF=ADP-ribosylation factor (predicted) --- --- --- --- --- --- SPBC1539.08 // |||ADP-ribosylation factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.73363927680711 6.4974922435704 15.5839818868168 41.8610562528572 10.6078371925153 Max fold change at or above threshold 2 41.8610562528572 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1774664_x_at SPCC1906.04.S1 --- 41.7089986801147 --- --- --- --- 4.17089986801147 0.176513060927391 0.0789263397455215 0.186056345701218 0.334473013877869 0.985840022563934 0.99804699420929 0.991943001747131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1906.04 /GEN=wtf20 /DEF=wtf element --- --- --- --- --- --- SPCC1906.04 // |wtf20||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- SPCC553.05c // sanger // 2 // Cross Hyb Matching Probes No No -15.0977699985706 -23.6294121584985 -33.5533871461837 -41.7089986801147 -22.4174018483057 Max fold change at or above threshold 1 41.7089986801147 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776007_at SPBC2D10.11c.S1 --- 41.707420014277 --- --- --- --- 0.14397044479847 3.34183478355408 6.00463581085205 1.90330219268799 0.888427972793579 0.303710997104645 0.366210997104645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2D10.11c /DEF=histone binding --- --- --- --- --- --- D89271 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1779. // gb // 11 // --- /// SPBC2D10.11c // |||nucleosome assembly protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 13.4336961441437 23.2119501209571 5.50586817444934 41.707420014277 13.2200896882151 Max fold change at or above threshold 2 41.707420014277 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777434_at SPBPB21E7.01c.S1 --- 41.5798296140287 --- --- --- --- 10.6524047851563 6.82143306732178 1.73060989379883 0.781579732894897 0.171387001872063 0.24609400331974 0.432372987270355 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB21E7.01c /GEN=eno102 /DEF=enolase (predicted) --- --- --- --- --- --- SPBPB21E7.01c // |eno102|SPAP8B6.07c, SPBPB8B6.07c, SPAPB21E7.01c, eno1|enolase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -41.5798296140287 -1.56160804922163 -12.2820113152374 -6.15528942907715 -13.6293257575919 Max fold change at or above threshold 2 41.5798296140287 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770969_at SPAC13C5.05c.S1 --- 41.568021774292 --- --- --- --- 4.1568021774292 0.193662375211716 2.18310260772705 0.0984285250306129 0.2958984375 0.665526986122131 0.366210997104645 0.5244140625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13C5.05c /DEF=N-acetylglucosamine-phosphate mutase (putative) --- --- --- --- --- --- SPAC13C5.05c // |||N-acetylglucosamine-phosphate mutase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.22382325173291 -21.4641701718514 -7.83555171602904 -1.90408007517204 -41.568021774292 Max fold change at or above threshold 1 41.568021774292 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770893_at SPBC336.08.S1 --- 41.4261562914724 --- --- --- --- 4.68257999420166 0.325841248035431 0.240160346031189 0.633738100528717 0.194580003619194 0.932372987270355 0.968505859375 0.55859375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC336.08 /DEF=localization spindle pole body (predicted) --- --- --- --- --- --- SPBC336.08 // |spc24||spindle pole body protein Spc24|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.57915576818412 -14.3707404217053 -41.4261562914724 -19.497723381834 -7.38882511607723 Max fold change at or above threshold 1 41.4261562914724 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772728_at SPAC24B11.07c.S1 --- 41.3517559727212 --- --- --- --- 0.273589909076691 11.3134231567383 9.16748809814453 2.02325630187988 0.943848013877869 0.334473013877869 0.398925989866257 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24B11.07c /DEF=ketopantoate reductase (predicted) --- --- --- --- --- --- SPAC24B11.07c // |||ketopantoate reductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.04859635252306 41.3517559727212 1.50869331821667 33.508136791605 7.39521537438261 Max fold change at or above threshold 2 41.3517559727212 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772746_at SPCC18B5.11c.S1 --- 41.3176370999301 --- --- --- --- 0.222644492983818 9.19914436340332 5.53509140014648 5.51375102996826 0.601073980331421 0.303710997104645 0.171387001872063 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18B5.11c /GEN=cds1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- X85040 // S.pombe mRNA for serine/threonine protein kinase. // gb // 11 // --- /// SPCC18B5.11c // |cds1||replication checkpoint kinase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 28.7943028704302 41.3176370999301 3.47532828039961 24.86067059628 24.7648210655226 Max fold change at or above threshold 3 41.3176370999301 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773418_at SPBC646.17c.S1 --- 41.1569399017847 --- --- --- --- 5.22923135757446 4.19186401367188 1.28827130794525 3.47906517982483 0.194580003619194 0.665526986122131 0.567627012729645 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC646.17c /DEF=WD repeat protein --- --- --- --- --- --- SPBC646.17c // ||SPBC855.01c, SPBP35G2.01c|WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.81991908029289 -1.24747161179828 -41.1569399017847 -4.05910721237354 -1.50305644973221 Max fold change at or above threshold 3 41.1569399017847 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775650_s_at SPAC1F12.03c.S1 --- 41.0089302062988 --- --- --- --- 4.10089302062988 0.568513154983521 1.25491988658905 0.0717363432049751 0.0537109375 0.665526986122131 0.366210997104645 0.774169921875 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F12.03c /DEF=sequence orphan --- --- --- --- --- --- SPAC1F12.03c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPMIT.11 // |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe|chr mitochondrial|||Manual // sanger // 11 // --- --- No No -37.6390502811786 -7.21336522239095 -13.0431194184115 -3.26785244576557 -41.0089302062988 Max fold change at or above threshold 1 41.0089302062988 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1772528_at YAL064W.S1 Hypothetical protein 41.0046812222243 0.721636980772018 3.28126990050077 --- --- --- --- 6.40630626678467 0.696537137031555 0.746736824512482 0.156233534216881 0.091796875 0.828612983226776 0.805419981479645 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL064W /GEN=SEO1 /DB_XREF=GI:6319254 /SEG=NC_001133:+21526,21852 /DEF=Hypothetical ORF /NOTE=Yal064wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000060 // YAL064W SGDID:S0000060, Chr I from 21526-21852, Uncharacterized ORF // sgd // 11 // --- /// YAL064W // cdna:known chromosome:SGD1:I:21526:21852:1 gene:YAL064W // ensembl // 11 // --- --- No cerevisiae_gene -11.3400654870943 -9.19736497336888 -27.5030227612624 -8.57906836316412 -41.0046812222243 Max fold change at or above threshold 1 41.0046812222243 Max fold change at or above threshold 1.49382330073996 -0.442537913700266 -0.425513630299986 -0.625771756739711 2.0014534406364 2.94871075043905 1.47328470928679 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777058_at SPBC16C6.10.S1 --- 40.8568334579468 --- --- --- --- 4.08568334579468 0.645416676998138 0.451167166233063 0.0868180468678474 0.171387001872063 0.753906011581421 0.633789002895355 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16C6.10 /GEN=chp2 /DEF=pleiotrophic transcriptional silencing protein --- --- --- --- --- --- SPBC16C6.10 // |chp2||pleiotrophic transcriptional silencing protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.57789591367056 -6.33030333953776 1.3586006977581 -9.05580824931774 -40.8568334579468 Max fold change at or above threshold 1 40.8568334579468 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779521_at SPCC417.10.S1 --- 40.5155713463845 --- --- --- --- 0.542474031448364 21.978645324707 17.4069557189941 12.0825090408325 0.398925989866257 0.0805663987994194 0.111571997404099 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC417.10 /DEF=membrane transporter --- --- --- --- --- --- SPCC417.10 // |||membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 17.4986166665421 40.5155713463845 29.4801646023977 32.0880903229946 22.2729722353218 Max fold change at or above threshold 3 40.5155713463845 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779457_at SPAC212.05c.S1 --- 40.4524278640747 --- --- --- --- 0.0707082897424698 4.04524278640747 0.0412555709481239 0.239669978618622 0.904784977436066 0.129638999700546 0.953857004642487 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC212.05c /DEF=pseudogene --- --- --- --- --- --- SPAC212.05c // |||pseudogene|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 23.1667876243591 40.4524278640747 2.34878703951836 1 2.39669978618622 Max fold change at or above threshold 1 40.4524278640747 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778707_at SPAPB17E12.08.S1 --- 40.4052850361418 --- --- --- --- 0.27633810043335 11.1655197143555 2.92520689964294 6.88880443572998 0.725830018520355 0.129638999700546 0.219482004642487 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB17E12.08 /DEF=sequence orphan --- --- --- --- --- --- SPAPB17E12.08 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 14.4596633783301 40.4052850361418 10.6684454283954 10.5856083365112 24.928898421633 Max fold change at or above threshold 3 40.4052850361418 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779437_at SPAC343.20.S1 --- 40.3944258670761 --- --- --- --- 7.7000789642334 5.19579219818115 1.72996938228607 0.756768524646759 0.567627012729645 0.725830018520355 0.828612983226776 0.718505859375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC343.20 /DEF=sequence orphan --- --- --- --- --- --- SPAC343.20 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.71264310916172 -1.48198362646776 -40.3944258670761 -4.4509914701832 -10.1749461208467 Max fold change at or above threshold 2 40.3944258670761 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770972_at SPAC26F1.05.S1 --- 40.3810572031205 --- --- --- --- 6.687331199646 0.596686244010925 1.08003091812134 2.660719871521 0.171387001872063 0.865234375 0.753906011581421 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26F1.05 /DEF=sequence orphan --- --- --- --- --- --- SPAC26F1.05 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -40.3810572031205 -11.2074499232524 -12.9423874412879 -6.19179607494782 -2.51335410060406 Max fold change at or above threshold 2 40.3810572031205 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777852_s_at SPAC977.06.S1 --- 39.9731963260394 --- --- --- --- 6.11405658721924 3.89589595794678 3.29898858070374 3.15835428237915 0.219482004642487 0.466064006090164 0.129638999700546 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC977.06 /DEF=DUF999 --- --- --- --- --- --- SPBPB2B2.14c // |||DUF999|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPBC1348.07 // ||SPAC1348.07|DUF999|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPAC977.06 // |||DUF999|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -15.0730968473292 -1.56935828194998 -39.9731963260394 -1.85331244338985 -1.93583621107053 Max fold change at or above threshold 4 39.9731963260394 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771071_at SPBC18E5.15.S1 --- 39.8148063259225 --- --- --- --- 5.54458951950073 1.23931455612183 0.343136370182037 0.139259487390518 0.432372987270355 0.601073980331421 0.805419981479645 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18E5.15 /DEF=pseudogene --- --- --- --- --- --- SPBC18E5.15 // |||pseudogene|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.57375259101058 -4.47391624032187 -20.2389165214209 -16.1585596903041 -39.8148063259225 Max fold change at or above threshold 1 39.8148063259225 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775786_at SPAC22E12.06c.S1 --- 39.6676958747436 --- --- --- --- 10.005802154541 1.48779201507568 0.807483971118927 2.0458128452301 0.303710997104645 0.601073980331421 0.5 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22E12.06c /GEN=gmh3 /DEF=galactosyltransferase --- --- --- --- --- --- SPAC22E12.06c // |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -39.6676958747436 -6.72526942822181 -2.25075552778181 -12.3913322275314 -4.89086877026408 Max fold change at or above threshold 1 39.6676958747436 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770163_at SPBC337.12.S1 --- 39.5117188499516 --- --- --- --- 12.9776344299316 8.62845420837402 2.06230974197388 1.6366571187973 0.24609400331974 0.466064006090164 0.5 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC337.12 /DEF=zinc finger protein --- --- --- --- --- --- SPBC337.12 // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.93262796432668 -1.50405091300556 -39.5117188499516 -6.29276687482962 -7.92935446336387 Max fold change at or above threshold 2 39.5117188499516 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772482_at SPAC4A8.13c.S1 --- 39.5000326283849 --- --- --- --- 0.305984437465668 10.9211854934692 12.0863952636719 1.95927166938782 0.633789002895355 0.303710997104645 0.219482004642487 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4A8.13c /GEN=pts1 /DEF=20S proteasome component (beta 5) --- --- --- --- --- --- SPAC4A8.13c // |pts1||20S proteasome component |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 28.2485842689888 35.6919638917735 27.3766478551853 39.5000326283849 6.4031742451204 Max fold change at or above threshold 2 39.5000326283849 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778158_at SPBC651.05c.S1 --- 39.3751126895105 --- --- --- --- 10.0462322235107 8.53822803497314 0.25514167547226 4.11106777191162 0.00585938012227416 0.149657994508743 0.567627012729645 0.129638999700546 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC651.05c /DEF=EAP30 family --- --- --- --- --- --- SPBC651.05c // |||EAP30 family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -2.21524018852038 -1.17661793317779 -13.2772434776416 -39.3751126895105 -2.44370386986817 Max fold change at or above threshold 3 39.3751126895105 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1770757_at SPBC19F5.05c.S1 --- 39.1106936114995 --- --- --- --- 5.16179037094116 1.14105713367462 0.348856270313263 2.16494274139404 0.432372987270355 0.725830018520355 0.850341975688934 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19F5.05c /GEN=ppp1 /DEF=localization nucleolus (predicted) --- --- --- --- --- --- SPBC19F5.05c // |ppp1|SPBC25D12.01c|pescadillo-family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -10.3722562103396 -4.52369142491429 -39.1106936114995 -14.7963239024084 -2.38426184316422 Max fold change at or above threshold 1 39.1106936114995 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773293_at YHR214C-E.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 39.0223416786168 30.1774644851685 3.36688053607941 --- --- --- --- 0.968126535415649 37.778564453125 22.5763645172119 5.76563453674316 0.888427972793579 0.0239257998764515 0.111571997404099 0.129638999700546 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR214C-E /GEN=FLO5 /DB_XREF=GI:33438813 /SEG=NC_001140:-551198,551497 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Yhr214c-ep; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028654 // span:7-29 // numtm:1 S0028654 // YHR214C-E SGDID:S0028654, Chr VIII from 551498-551199, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// YHR214C-E // cdna:known chromosome:SGD1:VIII:551199:551498:-1 gene:YHR214C-E // ensembl // 10 // --- YAR070C // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 2.48793052878417 39.0223416786168 1.77078458766242 23.3196423105159 5.95545553791456 Max fold change at or above threshold 3 39.0223416786168 Max fold change at or above threshold -0.941190173667931 1.25100937516342 0.345661388941294 -0.655480590436778 16.7721725106239 16.7915543716505 1.00115559633162 AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1772645_at SPCC1620.08.S1 --- 39.0000308677271 --- --- --- --- 8.22738552093506 2.14910531044006 4.79458093643188 1.43499314785004 0.0805663987994194 0.633789002895355 0.0676269978284836 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1620.08 /DEF=succinate-CoA ligase (beta subunit) (predicted) --- --- --- --- --- --- SPCC1620.08 // |||succinate-CoA ligase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -39.0000308677271 -3.82828402171244 -27.0510875249588 -1.71597593825538 -5.73339707807083 Max fold change at or above threshold 2 39.0000308677271 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776124_at SPBC83.03c.S1 --- 38.8951127465978 --- --- --- --- 0.265543401241302 10.3283405303955 5.50346946716309 4.25283145904541 0.45751953125 0.0461426004767418 0.018554700538516 0.0561522990465164 A P P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC83.03c /GEN=tas3 /DEF=RITS complex (PMID 14704433) --- --- --- --- --- --- SPBC83.03c // |tas3||RITS complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 9.13403421129008 38.8951127465978 2.19939870875466 20.7253105949412 16.0155795217099 Max fold change at or above threshold 3 38.8951127465978 Max fold change at or above threshold AAPAPM No 4 0 APPM 1 2 1 No No 1 < x = 2
1771818_at SPAC3A12.17c.S1 --- 38.7679109650161 --- --- --- --- 7.76531744003296 3.90253114700317 8.52975082397461 0.200302705168724 0.533936023712158 0.533936023712158 0.398925989866257 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A12.17c /GEN=cys12 /DEF=cysteine synthase --- --- --- --- --- --- SPAC3A12.17c // |cys12|cys1b|cysteine synthase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.61916769592853 -1.98981562158603 -2.99856783619346 1.09844200058078 -38.7679109650161 Max fold change at or above threshold 3 38.7679109650161 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772254_at SPBC13G1.08c.S1 --- 38.7298960331956 --- --- --- --- 0.281220227479935 0.889246761798859 10.8916301727295 9.48582553863525 0.633789002895355 0.398925989866257 0.0561522990465164 0.0461426004767418 A A M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13G1.08c /GEN=ash2 /DEF=SET1 complex (TAP) (PMID 12488447) --- --- --- --- --- --- SPBC13G1.08c // |ash2||Ash2-trithorax family protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 8.93910494548379 3.16210099738401 5.98894532059302 38.7298960331956 33.7309503787813 Max fold change at or above threshold 2 38.7298960331956 Max fold change at or above threshold AAAAMP No 4 0 AAMP 2 1 1 No No x = 1
1779885_at SPAC6G10.07.S1 --- 38.6966724000374 --- --- --- --- 0.233201652765274 1.86587882041931 9.02412796020508 0.767094671726227 0.981445014476776 0.753906011581421 0.334473013877869 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G10.07 /DEF=nuclear cap-binding complex (predicted) --- --- --- --- --- --- SPAC6G10.07 // |||nuclear cap-binding complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 3.36504582969167 8.00113892116102 1.20894487619025 38.6966724000374 3.28940495331024 Max fold change at or above threshold 1 38.6966724000374 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778923_at SPAC1556.01c.S1 --- 38.503457626119 --- --- --- --- 7.62660551071167 1.38874363899231 0.424292534589767 1.75549876689911 0.171387001872063 0.696289002895355 0.828612983226776 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1556.01c /GEN=rad50 /DEF=involved in DNA repair --- --- --- --- --- --- SPAC1556.01c // |rad50|SPAP4C9.01c|AAA family ATPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -38.503457626119 -5.49173029245746 -4.3572155655793 -17.9748755609984 -4.34440949462084 Max fold change at or above threshold 1 38.503457626119 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771123_at SPBP35G2.10.S1 --- 38.3933479509446 --- --- --- --- 4.93348741531372 4.96675491333008 2.58519721031189 0.802255809307098 0.334473013877869 0.149657994508743 0.696289002895355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP35G2.10 /DEF=zinc finger protein --- --- --- --- --- --- SPBP35G2.10 // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.4229598820072 1.00674320115079 -38.3933479509446 -1.90836018066046 -6.14951909114218 Max fold change at or above threshold 3 38.3933479509446 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777596_at SPCC736.10c.S1 --- 38.298576856646 --- --- --- --- 5.74425315856934 0.149986073374748 5.69799184799194 0.190895572304726 0.149657994508743 0.822998046875 0.171387001872063 0.71875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC736.10c /GEN=mrps8 /DEF=mitochondrial ribosomal protein s8 --- --- --- --- --- --- SPCC736.10c // |mrps8||mitochondrial ribosomal protein S8|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -11.1770687056472 -38.298576856646 -6.32955704596428 -1.00811887974071 -30.0910759176741 Max fold change at or above threshold 2 38.298576856646 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774278_at SPBC776.13.S1 --- 38.2808177530134 --- --- --- --- 6.63057804107666 4.09223365783691 1.97770929336548 4.4363694190979 0.111571997404099 0.466064006090164 0.432372987270355 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC776.13 /GEN=cnd1 /DEF=condensin subunit --- --- --- --- --- --- SPBC776.13 // |cnd1||condensin subunit Cnd1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -38.2808177530134 -1.62028334535068 -3.17350767089692 -3.35265555120761 -1.49459556107592 Max fold change at or above threshold 3 38.2808177530134 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771741_at SPAC1639.02c.S1 --- 38.2532900449706 --- --- --- --- 0.233378887176514 8.92751026153564 6.50281572341919 2.32414364814758 0.888427972793579 0.219482004642487 0.0375977009534836 0.432372987270355 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1639.02c /GEN=trk2 /DEF=potassium ion transporter activity (PMID 10629185) --- --- --- --- --- --- AF266750 // Schizosaccharomyces pombe potassium transporter Trk2 (trk2) mRNA, complete cds. // gb // 10 // --- /// SPAC1639.02c // |trk2|SPAC1F5.12|potassium ion transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 3.33002583612399 38.2532900449706 23.1601410617636 27.8637703782556 9.95867139596797 Max fold change at or above threshold 2 38.2532900449706 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1775488_at SPAC14C4.02c.S1 --- 38.023721378491 --- --- --- --- 7.26592922210693 0.701337575912476 3.39981436729431 5.26093482971191 0.194580003619194 0.805419981479645 0.5 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC14C4.02c /GEN=spr18 /DEF=SMC family (PMID 10747036) --- --- --- --- --- --- SPAC14C4.02c // |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.90190255683768 -10.3601025692279 -38.023721378491 -2.13715469056312 -1.38110990865569 Max fold change at or above threshold 3 38.023721378491 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771581_at SPBC1539.05.S1 --- 37.792752638939 --- --- --- --- 5.9190354347229 0.302873730659485 0.297237396240234 2.74249625205994 0.274170011281967 0.953857004642487 0.904784977436066 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1539.05 /DEF=Golgi transport complex (predicted) --- --- --- --- --- --- SPBC1539.05 // |||Golgi transport complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -7.74533119355471 -19.542914540111 -37.792752638939 -19.9134951038899 -2.15826564221446 Max fold change at or above threshold 2 37.792752638939 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769532_at SPBC428.16c.S1 --- 37.7832388877869 --- --- --- --- 3.77832388877869 7.02613019943237 7.38555002212524 0.0333336144685745 0.274170011281967 0.0952147990465164 0.149657994508743 0.850830078125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC428.16c /GEN=rhb1 /DEF=GTPase --- --- --- --- --- --- SPBC428.16c // |rhb1||GTPase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.28413996162516 1.8595891739984 -5.87696232100761 1.9547159638854 -37.7832388877869 Max fold change at or above threshold 3 37.7832388877869 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770738_at SPAC10F6.09c.S1 --- 37.6731179958087 --- --- --- --- 5.45423412322998 7.92140007019043 8.52955913543701 0.379677802324295 0.171387001872063 0.0805663987994194 0.04443359375 0.5 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC10F6.09c /GEN=psm3 /DEF=mitotic cohesin complex (subunit) --- --- --- --- --- --- SPAC10F6.09c // |psm3|smc3|mitotic cohesin complex subunit Psm3|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.40760560711091 1.45233957531317 -37.6731179958087 1.56384176819785 -14.3654279756164 Max fold change at or above threshold 3 37.6731179958087 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1779293_at SPCC613.02.S1 --- 37.6573096860491 --- --- --- --- 0.253505527973175 6.05115365982056 9.54633617401123 2.61389708518982 0.904784977436066 0.567627012729645 0.219482004642487 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC613.02 /DEF=transporter --- --- --- --- --- --- SPCC613.02 // |||membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 14.3197170451695 23.8699081168 26.1685253427075 37.6573096860491 10.3110062572932 Max fold change at or above threshold 3 37.6573096860491 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774626_at SPAC23H3.12c.S1 --- 37.6325950076229 --- --- --- --- 9.14144515991211 9.9294900894165 11.1075716018677 3.40083074569702 0.194580003619194 0.366210997104645 0.0461426004767418 0.274170011281967 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H3.12c /DEF=conserved protein (fungal and plant) --- --- --- --- --- --- SPAC23H3.12c // |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -37.6325950076229 1.08620572740076 -11.5487673523678 1.21507829534192 -2.68800356250558 Max fold change at or above threshold 4 37.6325950076229 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1772663_at SPBC2G5.04c.S1 --- 37.6219064553537 --- --- --- --- 0.318031758069992 11.9649610519409 7.8700909614563 6.26208543777466 0.432372987270355 0.129638999700546 0.129638999700546 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G5.04c /DEF=COPII-coated vesicle component (predicted) --- --- --- --- --- --- SPBC2G5.04c // |||COPII-coated vesicle component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 14.2104304271942 37.6219064553537 26.7005712009933 24.7462423539609 19.6901261552518 Max fold change at or above threshold 3 37.6219064553537 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1771301_at SPAC31G5.21.S1 --- 37.5854852643881 --- --- --- --- 5.15322303771973 5.62423467636108 3.31610035896301 1.06857788562775 0.274170011281967 0.0561522990465164 0.334473013877869 0.125 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31G5.21 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC31G5.21 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.91713801599813 1.0914013686568 -37.5854852643881 -1.554000928769 -4.82250578739276 Max fold change at or above threshold 3 37.5854852643881 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1779100_at SPAC1687.03c.S1 --- 37.5741771291801 --- --- --- --- 12.4327268600464 4.25824785232544 12.8297252655029 0.988468766212463 0.432372987270355 0.656494140625 0.334473013877869 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.03c /GEN=rfc4 /DEF=replication factor C complex --- --- --- --- --- --- SPAC1687.03c // |rfc4||DNA replication factor C complex subunit Rfc4|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.15246515417087 -2.919681355151 -37.5741771291801 1.03193172422474 -12.5777639972228 Max fold change at or above threshold 3 37.5741771291801 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775632_at SPCC757.10.S1 --- 37.5650180534008 --- --- --- --- 11.6895437240601 7.47996520996094 6.62641286849976 6.62947511672974 0.0461426004767418 0.398925989866257 0.0239257998764515 0.0952147990465164 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC757.10 /GEN=vph2 /DEF=involved in vacuolar ATPase assembly --- --- --- --- --- --- SPCC757.10 // |vph2||endoplasmic reticulum membrane involved in assembly of the V-ATPase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.71926264503022 -1.5627804937506 -37.5650180534008 -1.7640832160684 -1.76326836110464 Max fold change at or above threshold 4 37.5650180534008 Max fold change at or above threshold PAAAPA No 4 0 PAPA 2 2 0 No No 1 < x = 2
1774916_at SPAP27G11.15.S1 --- 37.5445682974368 --- --- --- --- 5.70485973358154 0.151949003338814 4.06115293502808 1.47616350650787 0.0805663987994194 0.665526986122131 0.725830018520355 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP27G11.15 /GEN=slx1 /DEF=stucture-specific endonuclease (catalytic subunit) (PMID 14528010) --- --- --- --- --- --- SPAP27G11.15 // |slx1||structure-specific endonuclease |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -11.4915531768952 -37.5445682974368 -12.5398851423614 -1.40473895587045 -3.86465300654763 Max fold change at or above threshold 2 37.5445682974368 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775955_at SPAC750.01.S1 --- 37.5273168343482 --- --- --- --- 4.18612813949585 0.346252858638763 0.284923046827316 0.390169680118561 0.2392578125 0.65771484375 0.780517995357513 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC750.01 /DEF=pseudogene --- --- --- --- --- --- SPAC750.01 // |||pseudogene|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.98338762328446 -12.0898009505335 -37.5273168343482 -14.6921359507746 -10.7289939552038 Max fold change at or above threshold 1 37.5273168343482 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773048_at SPBC887.07.S1 --- 37.4446867927049 --- --- --- --- 0.237809523940086 8.90470314025879 3.75679969787598 3.76346659660339 0.932861328125 0.398925989866257 0.665526986122131 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC887.07 /GEN=mrpl38 /DEF=mitochondrial ribosomal protein subunit YmL34YmL38 --- --- --- --- --- --- SPBC887.07 // |mrpl38||mitochondrial ribosomal protein subunit L38|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.22711712238395 37.4446867927049 3.58501213756868 15.7975157413059 15.8255503574851 Max fold change at or above threshold 3 37.4446867927049 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770786_at SPAC11G7.02.S1 --- 37.2073698043823 --- --- --- --- 3.72073698043823 2.5822582244873 2.87172174453735 2.27668952941895 0.219482004642487 0.423828125 0.194580003619194 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11G7.02 /GEN=pub1 /DEF=ubiquitin-protein ligase (E3) --- --- --- --- --- --- Y07592 // S.pombe mRNA for ubiquitin--protein ligase. // gb // 9 // --- /// U66716 // Schizosaccharomyces pombe E6-AP-like protein ubiquitin ligase (PUB1) mRNA, complete cds. // gb // 9 // --- /// SPAC11G7.02 // |pub1||ubiquitin-protein ligase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -37.2073698043823 -1.4408849375151 -1.10355460522324 -1.29564676226584 -1.63427508773576 Max fold change at or above threshold 3 37.2073698043823 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779742_at SPAC5H10.12c.S1 --- 37.1930937508992 --- --- --- --- 0.230439677834511 8.57076454162598 3.58808851242065 5.63421869277954 0.601073980331421 0.0375977009534836 0.432372987270355 0.0952147990465164 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5H10.12c /DEF=galactosyltransferase family 8 --- --- --- --- --- --- SPAC5H10.12c // |||acetylglucosaminyltransferase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 17.1388579489406 37.1930937508992 28.0312583396408 15.5706193748345 24.4498636073677 Max fold change at or above threshold 3 37.1930937508992 Max fold change at or above threshold AAPPAA No 4 0 APAA 3 1 0 No No x = 1
1776405_at SPAC869.09.S1 --- 37.1689790721317 --- --- --- --- 9.00948047637939 6.50736999511719 2.61833167076111 0.242392465472221 0.0676269978284836 0.129638999700546 0.466064006090164 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC869.09 /DEF=hypothetical protein --- --- --- --- --- --- SPAC869.09 // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.31050697235418 -1.38450410582765 -1.62303106791179 -3.44092407275526 -37.1689790721317 Max fold change at or above threshold 3 37.1689790721317 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770433_at SPCC737.02c.S1 --- 36.9344364659199 --- --- --- --- 0.436280936002731 16.113790512085 11.3589668273926 3.01655554771423 0.533936023712158 0.171387001872063 0.129638999700546 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC737.02c /GEN=qcr7 /DEF=ubiquinol-cytochrome-c reductase complex subunit 6 --- --- --- --- --- --- SPCC737.02c // |qcr7||ubiquinol-cytochrome-c reductase complex subunit 6|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.14631407446288 36.9344364659199 7.41038580153409 26.0359000131087 6.91425019702293 Max fold change at or above threshold 3 36.9344364659199 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774940_at SPCC188.12.S1 --- 36.922166859262 --- --- --- --- 0.239409476518631 8.83951663970947 0.544069349765778 0.162289083003998 0.633789002895355 0.466064006090164 0.696289002895355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC188.12 /GEN=spn6 /DEF=septin --- --- --- --- --- --- SPCC188.12 // |spn6|SPCC584.09|septin|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 27.1501605390297 36.922166859262 2.93626377073585 2.27254725952102 -1.47520382817576 Max fold change at or above threshold 1 36.922166859262 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770252_at SPAC17A2.13c.S1 --- 36.8524290416582 --- --- --- --- 8.06330299377441 1.25733077526093 10.6415500640869 7.99750709533691 0.5 0.665526986122131 0.303710997104645 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A2.13c /GEN=rad25 /DEF=14-3-3 protein --- --- --- --- --- --- SPAC17A2.13c // |rad25||14-3-3 protein Rad25|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -36.8524290416582 -6.4130323956328 -3.20102296610005 1.31975073642937 -1.0082270509614 Max fold change at or above threshold 3 36.8524290416582 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772356_at YAL064C-A.S1 Hypothetical protein 36.6362492928883 1.9171786904335 3.11443317681551 --- --- --- --- 6.05959463119507 0.622282385826111 3.21207499504089 0.169271722435951 0.149657994508743 0.725830018520355 0.24609400331974 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL064C-A /GEN=SEO1 /DB_XREF=GI:7839146 /SEG=NC_001133:-13364,13744 /DEF=Hypothetical ORF /NOTE=Yal064c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002140 // YAL064C-A SGDID:S0002140, Chr I from 13744-13364, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018243 // cdna:GeneFinder chromosome:SGD1:I:13364:13744:-1 // ensembl // 11 // --- /// GENSCAN00000020322 // cdna:Genscan chromosome:SGD1:I:13364:13744:-1 // ensembl // 11 // --- /// YAL064C-A // cdna:known chromosome:SGD1:I:13364:13744:-1 gene:YAL064C-A // ensembl // 11 // --- --- No cerevisiae_gene -28.8159711418317 -9.73769267653407 -36.6362492928883 -1.88650471752697 -35.7980325596786 Max fold change at or above threshold 2 36.6362492928883 Max fold change at or above threshold 1.30463741425019 -0.697096208618504 0.256329805592365 -0.863871011224052 2.51580593362451 2.71630160139725 1.07969440929169 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773006_at SPCP1E11.03.S1 --- 36.6221403848801 --- --- --- --- 6.0529990196228 0.628724932670593 0.372064352035522 1.02571630477905 0.111571997404099 0.780517995357513 0.932372987270355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP1E11.03 /DEF=arrestin family --- --- --- --- --- --- SPCP1E11.03 // |||arrestin family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -1.30818737641118 -9.62742004506149 -36.6221403848801 -16.2686884312015 -5.90124090981148 Max fold change at or above threshold 1 36.6221403848801 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777625_at SPCC1235.13.S1 --- 36.2407092813892 --- --- --- --- 10.9575777053833 12.8953065872192 9.47445106506348 6.55587005615234 0.0239257998764515 0.129638999700546 0.274170011281967 0.194580003619194 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1235.13 /GEN=ght6 /DEF=meiotic expression upregulated --- --- --- --- --- --- SPCC1235.13 // |ght6|meu12|hexose transporter |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- AB054532 // gb // 4 // Cross Hyb Matching Probes No No -34.9705171219147 1.17683916408678 -36.2407092813892 -1.15653958526302 -1.67141471864595 Max fold change at or above threshold 4 36.2407092813892 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
AFFX-Scv2-r2-Bs-phe-M_at AFFX-Scv2-r2-Bs-phe-M --- 36.1888507330253 --- --- --- --- 0.265172570943832 9.59629058837891 0.924552738666534 0.525146186351776 0.888427972793579 0.303710997104645 0.780517995357513 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2484-2875 of gb:M24537.1 /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. --- --- --- --- --- --- AFFX-Scv2-r2-Bs-phe-M // --- // affx // --- // --- --- AFFX_control No 1.70444827688907 36.1888507330253 15.7529666886386 3.48660774142575 1.98039406746564 Max fold change at or above threshold 1 36.1888507330253 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778897_at SPAC16E8.05c.S1 --- 36.1749468406076 --- --- --- --- 3.66975092887878 3.65169715881348 4.41848659515381 0.10144454240799 0.633789002895355 0.4912109375 0.111571997404099 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16E8.05c /GEN=mde1 /DEF=sequence orphan --- --- --- --- --- --- SPAC16E8.05c // |mde1||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.58477199521671 -1.00494393956567 -6.5928504303414 1.20402901471675 -36.1749468406076 Max fold change at or above threshold 3 36.1749468406076 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777000_at SPCC126.06.S1 --- 36.121481724556 --- --- --- --- 0.482067555189133 17.4129943847656 8.18560600280762 1.84084939956665 0.466064006090164 0.24609400331974 0.194580003619194 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC126.06 /GEN=twf1 /DEF=twinfilin --- --- --- --- --- --- SPCC126.06 // |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 13.737209408573 36.121481724556 13.7170920743547 16.9802051905279 3.81865441835101 Max fold change at or above threshold 2 36.121481724556 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776463_at SPAC22E12.15.S1 --- 35.9781162996794 --- --- --- --- 5.21345615386963 0.566755592823029 1.77711236476898 0.144906312227249 0.567627012729645 0.870360970497131 0.696289002895355 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22E12.15 /DEF=dubious --- --- --- --- --- --- SPAC22E12.15 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.45573154917565 -9.19877319234069 -1.4669772432502 -2.93366714295939 -35.9781162996794 Max fold change at or above threshold 1 35.9781162996794 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771121_at SPAC11D3.08c.S1 --- 35.8603170828477 --- --- --- --- 7.76578330993652 0.870468378067017 7.50219964981079 0.216556459665298 0.24609400331974 0.850341975688934 0.274170011281967 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11D3.08c /DEF=amino acid permease family --- --- --- --- --- --- SPAC11D3.08c // |||amino acid permease family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -19.6838059925912 -8.92138474597022 -14.2776279812448 -1.03513418363005 -35.8603170828477 Max fold change at or above threshold 2 35.8603170828477 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769873_s_at SPAC167.08.S1 --- 35.8422182709021 --- --- --- --- 6.16214323043823 2.00207781791687 0.171924158930779 2.90715456008911 0.030273400247097 0.753906011581421 0.828612983226776 0.149657994508743 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC167.08 /GEN=Tf2-2 /DEF=retrotransposable element --- --- --- --- --- --- SPAC167.08 // |Tf2-2|SPAC1705.01c|retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPAPB15E9.03c // |Tf2-5||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPBC1E8.04 // |Tf2-10-pseudo|SPBC1E8.04c|retrotransposable element: pseudo|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPBC1289.17 // |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPCC1020.14 // |Tf2-12||retrotransposable element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPAC26A3.13c // |Tf2-4||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPCC1494.11c // |Tf2-13-pseudo||retrotransposable element: pseudo|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPAC2E1P3.03c // |Tf2-3||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPAC19D5.09c // |Tf2-8|SPAC13D1.02c|retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPAC27E2.08 // |Tf2-6||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPAC13D1.01c // |Tf2-7||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPBC9B6.02c // |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPAC9.04 // |Tf2-1||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -28.2581829840726 -3.07787398436383 -7.29915942571501 -35.8422182709021 -2.11964761524387 Max fold change at or above threshold 2 35.8422182709021 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1770380_at SPAC4G9.05.S1 --- 35.835818135773 --- --- --- --- 0.124711446464062 4.4691367149353 0.626208186149597 3.86659646034241 0.870360970497131 0.194580003619194 0.888427972793579 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G9.05 /DEF=RNA-binding protein --- --- --- --- --- --- SPAC4G9.05 // |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.39214864521507 35.835818135773 12.2306117631779 5.02125670020235 31.0043429851217 Max fold change at or above threshold 2 35.835818135773 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779067_at SPAC8E11.07c.S1 --- 35.7529274671697 --- --- --- --- 0.115624636411667 4.13391923904419 0.467223793268204 1.35153317451477 0.962401986122131 0.567627012729645 0.828612983226776 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8E11.07c /GEN=alp31 /DEF=chaperone activity --- --- --- --- --- --- SPAC8E11.07c // |alp31||tubulin specific chaperone |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.24473396140287 35.7529274671697 18.6595719947759 4.04086713496519 11.6889723199026 Max fold change at or above threshold 1 35.7529274671697 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-ECOLOXB_at AFFX-Sc-ECOLOXB --- 35.7428744079626 --- --- --- --- 0.138314679265022 0.437222391366959 1.00411140918732 4.94376420974731 0.601073980331421 0.753906011581421 0.633789002895355 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL M10290 /DEF=E.coli loxB site, which can recombine with bacteriophage P1 loxP site. --- --- --- --- --- --- AFFX-Sc-ECOLOXB // --- // affx // --- // --- --- No No 17.6604169232077 3.16107005915984 25.5443859342365 7.25961564255488 35.7428744079626 Max fold change at or above threshold 1 35.7428744079626 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1775077_at SPAC25B8.05.S1 --- 35.742457139484 --- --- --- --- 5.28726863861084 5.30703163146973 1.02782475948334 2.40346598625183 0.219482004642487 0.725830018520355 0.850341975688934 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25B8.05 /DEF=pseudouridylate synthase (predicted) --- --- --- --- --- --- SPAC25B8.05 // |||pseudouridylate synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.22834393592424 1.00373784541882 -35.742457139484 -5.14413433790856 -2.19985165958444 Max fold change at or above threshold 2 35.742457139484 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770486_at SPAC105.01c.S1 --- 35.6914558364476 --- --- --- --- 5.99439239501953 8.56297779083252 1.06151413917542 5.41756391525269 0.129638999700546 0.0805663987994194 0.696289002895355 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC105.01c /DEF=potassium ionproton antiporter --- --- --- --- --- --- SPAC105.01c // |||potassium ion/proton antiporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -35.6914558364476 1.42849804059326 -1.62478609589728 -5.64702077324752 -1.10647377470579 Max fold change at or above threshold 3 35.6914558364476 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1774872_at SPBP4H10.19c.S1 --- 35.460873742328 --- --- --- --- 7.92225551605225 8.7193546295166 2.05933809280396 2.94425630569458 0.366210997104645 0.533936023712158 0.466064006090164 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP4H10.19c /DEF=calreticulincalnexin homolog --- --- --- --- --- --- SPBP4H10.19c // |||calreticulin/calnexin homolog|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.43856921788511 1.10061517352593 -35.460873742328 -3.84699119767432 -2.69074927367212 Max fold change at or above threshold 3 35.460873742328 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775543_at SPAC23C4.17.S1 --- 35.3684094844939 --- --- --- --- 8.28690433502197 0.863658130168915 0.858421981334686 0.234302431344986 0.194580003619194 0.805419981479645 0.665526986122131 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C4.17 /DEF=tRNA methyltransferase (predicted) --- --- --- --- --- --- SPAC23C4.17 // |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -21.12288436812 -9.59512108500758 -9.27685728400914 -9.65364880584416 -35.3684094844939 Max fold change at or above threshold 1 35.3684094844939 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771845_at SPBC20F10.08c.S1 --- 35.3430896921172 --- --- --- --- 0.134308144450188 4.74686479568481 3.42769527435303 2.57373809814453 0.850341975688934 0.194580003619194 0.030273400247097 0.490234375 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC20F10.08c /DEF=hypothetical protein --- --- --- --- --- --- SPBC20F10.08c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 2.30754664207773 35.3430896921172 2.36832238521282 25.5211274668774 19.1629339283969 Max fold change at or above threshold 3 35.3430896921172 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1769940_at SPCC736.05.S1 --- 35.330990411193 --- --- --- --- 7.39003896713257 9.99574851989746 5.90582609176636 2.51155042648315 0.24609400331974 0.149657994508743 0.144775390625 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC736.05 /GEN=wtf7 /DEF=wtf element --- --- --- --- --- --- SPCC736.05 // |wtf7||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.58838065992568 1.35259753897833 -35.330990411193 -1.25131333911702 -2.94242109941651 Max fold change at or above threshold 4 35.330990411193 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772490_at SPBC1198.14c.S1 --- 35.3162497748527 --- --- --- --- 17.6705360412598 0.78590852022171 0.734526216983795 5.42081832885742 0.171387001872063 0.696289002895355 0.850341975688934 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1198.14c /GEN=fbp1 /DEF=fructose-1,6-bisphosphatase (PMID 2157626) --- --- --- --- --- --- SPBC1198.14c // |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -35.3162497748527 -22.4842148756382 -2.20775452792296 -24.0570528766431 -3.25975433398896 Max fold change at or above threshold 2 35.3162497748527 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-ECOLOXL_at AFFX-Sc-ECOLOXL --- 35.2890253067017 --- --- --- --- 3.52890253067017 0.0884018465876579 1.70137774944305 0.124275073409081 0.149657994508743 0.665526986122131 0.6884765625 0.900634765625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL M10289 /DEF=E.coli/bacteriophage P1 loxL recombination site. --- --- --- --- --- --- AFFX-Sc-ECOLOXL // --- // affx // --- // --- --- No No -14.2195674938275 -35.2890253067017 -29.0436192112438 -2.07414404697919 -28.3958997879966 Max fold change at or above threshold 1 35.2890253067017 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779137_at SPCC622.11.S1 --- 35.256436411477 --- --- --- --- 0.321850061416626 5.94384574890137 11.3472862243652 1.77241623401642 0.932372987270355 0.149657994508743 0.0107421996071935 0.219482004642487 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC622.11 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC622.11 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 26.7289777226641 18.4677477541545 22.4455807937704 35.256436411477 5.50696254714109 Max fold change at or above threshold 2 35.256436411477 Max fold change at or above threshold AAAPPA No 4 0 AAPA 3 1 0 No No x = 1
1778150_at SPBPB2B2.04.S1 --- 35.2237558364868 --- --- --- --- 3.52237558364868 0.366282939910889 0.28063976764679 0.236700281500816 0.303710997104645 0.901123046875 0.753906011581421 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB2B2.04 /DEF=pseudo-very degraded transporter --- --- --- --- --- --- SPBPB2B2.04 // |||pseudo-very degraded transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -10.0472768475618 -9.61654284118617 -35.2237558364868 -12.5512346777664 -14.8811634752388 Max fold change at or above threshold 1 35.2237558364868 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778786_at SPAC343.09.S1 --- 35.0523622397525 --- --- --- --- 7.74339532852173 10.3351783752441 7.42791843414307 5.20099210739136 0.149657994508743 0.129638999700546 0.149657994508743 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC343.09 /DEF=UBX domain --- --- --- --- --- --- SPAC343.09 // |ubx3||UBX domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.76873534554667 1.33470886307147 -35.0523622397525 -1.04247177687474 -1.48883043247023 Max fold change at or above threshold 4 35.0523622397525 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771991_at SPCC290.03c.S1 --- 34.8518116674308 --- --- --- --- 0.461244344711304 3.77734613418579 16.0752010345459 3.96338987350464 0.943848013877869 0.696289002895355 0.030273400247097 0.533936023712158 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC290.03c /GEN=nup186 /DEF=nucleoporin --- --- --- --- --- --- D89197 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1094. // gb // 11 // --- /// SPCC290.03c // |nup186||nucleoporin|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 9.49051663936557 8.18946872194186 3.62213487136094 34.8518116674308 8.59282052766491 Max fold change at or above threshold 3 34.8518116674308 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1771034_at SPBC337.04.S1 --- 34.8445366206936 --- --- --- --- 10.2064018249512 3.57369995117188 0.292912542819977 4.46430635452271 0.149657994508743 0.366210997104645 0.466064006090164 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC337.04 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPBC337.04 // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -4.2592124197121 -2.85597614920198 -3.04633813930134 -34.8445366206936 -2.2862234386337 Max fold change at or above threshold 3 34.8445366206936 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775102_at SPBC9B6.04c.S1 --- 34.7962570418494 --- --- --- --- 0.452614992856979 15.7493076324463 5.58075332641602 4.42574119567871 0.888427972793579 0.327392578125 0.5927734375 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC9B6.04c /DEF=translation elongation factor (predicted) --- --- --- --- --- --- SPBC9B6.04c // |tuf1||mitochondrial translation elongation factor EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.95944318779733 34.7962570418494 3.51604027565511 12.3300231200681 9.77815862382886 Max fold change at or above threshold 3 34.7962570418494 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771811_at SPAC323.01c.S1 --- 34.780657202061 --- --- --- --- 6.08379602432251 0.409414708614349 0.904209077358246 0.502598583698273 0.432372987270355 0.633789002895355 0.850341975688934 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC323.01c /DEF=NADNADH kinase (predicted) --- --- --- --- --- --- SPAC323.01c // |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -34.780657202061 -14.8597397609698 -34.3030491131318 -6.72830673420913 -12.1046819900607 Max fold change at or above threshold 1 34.780657202061 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779301_at SPAC12B10.08c.S1 --- 34.6886214289072 --- --- --- --- 6.19003677368164 5.07284927368164 2.78197526931763 0.178445741534233 0.334473013877869 0.466064006090164 0.219482004642487 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12B10.08c /DEF=hypothetical protein --- --- --- --- --- --- SPAC12B10.08c // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.25489230155314 -1.22022879839858 -9.89600293340306 -2.22505097078018 -34.6886214289072 Max fold change at or above threshold 3 34.6886214289072 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779640_at SPAC1834.11c.S1 --- 34.632815188679 --- --- --- --- 0.261002361774445 7.27358055114746 1.34930992126465 6.19805240631104 0.633789002895355 0.466064006090164 0.665526986122131 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1834.11c /GEN=sec18 /DEF=AAA family ATPase --- --- --- --- --- --- SPAC1834.11c // |sec18||AAA family ATPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 16.419514247094 27.8678725422156 34.632815188679 5.1697230327391 23.7471123409501 Max fold change at or above threshold 2 34.632815188679 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773996_at YGL258W.S1 Hypothetical protein /// Hypothetical protein 34.5783084065294 9.6163215637207 1.61714415252209 --- --- 5625 // soluble fraction // inferred from direct assay --- 0.354583114385605 12.2608842849731 6.97175884246826 2.87970519065857 0.665526986122131 0.0461426004767418 0.018554700538516 0.0771484375 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL258W /GEN=YPS5 /DB_XREF=GI:6321179 /SEG=NC_001139:+11110,11730 /DEF=Hypothetical ORF /NOTE=Ygl258wp; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 11935221]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003227 // YGL258W SGDID:S0003227, Chr VII from 11110-11730, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019156 // cdna:Genscan chromosome:SGD1:VII:11110:11730:1 // ensembl // 11 // --- /// YGL258W // cdna:known chromosome:SGD1:VII:11110:11730:1 gene:YGL258W // ensembl // 11 // --- GENEFINDER00000021405 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 7.08085866042015 34.5783084065294 19.2698708630604 19.6618467141291 8.12138275577027 Max fold change at or above threshold 3 34.5783084065294 Max fold change at or above threshold -1.01168761253313 1.27738776387769 0.2605138716655 -0.526214023010062 5.6167328581214 5.2013582834726 0.926046941319597 AAPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1780125_at SPAC29E6.01.S1 --- 34.5586206406099 --- --- --- --- 0.134101867675781 4.18271064758301 3.46285700798035 4.63437557220459 0.994384765625 0.533936023712158 0.533936023712158 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29E6.01 /GEN=pof11 /DEF=F-box protein --- --- --- --- --- --- SPAC29E6.01 // |pof11|SPAC30.05|F-box protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.79168177874495 31.1905473061387 5.96160509828185 25.822585978836 34.5586206406099 Max fold change at or above threshold 3 34.5586206406099 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770654_at SPBC2F12.15c.S1 --- 34.5562411353353 --- --- --- --- 13.0174570083618 6.28774356842041 2.61027812957764 8.36172103881836 0.0952147990465164 0.334473013877869 0.366210997104645 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2F12.15c /DEF=zinc finger protein --- --- --- --- --- --- SPBC2F12.15c // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.46508808940766 -2.07029069597252 -34.5562411353353 -4.98699999086616 -1.55679159205739 Max fold change at or above threshold 4 34.5562411353353 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775051_at SPAC6F6.07c.S1 --- 34.4645731268247 --- --- --- --- 0.910532474517822 6.65464496612549 31.3811130523682 9.25432300567627 0.753906011581421 0.533936023712158 0.334473013877869 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F6.07c /GEN=rps13 /DEF=40S ribosomal protein S13 --- --- --- --- --- --- SPAC6F6.07c // |rps13||40S ribosomal protein S13|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 16.3255060813553 7.30852018172058 9.2748751652898 34.4645731268247 10.1636386012228 Max fold change at or above threshold 3 34.4645731268247 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775286_at SPBC19C7.08c.S1 --- 34.4332648144935 --- --- --- --- 8.39148712158203 1.45396769046783 9.63080787658691 0.793197631835938 0.24609400331974 0.633789002895355 0.111571997404099 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C7.08c /DEF=leucine carboxyl methyltransferase (predicted) --- --- --- --- --- --- SPBC19C7.08c // |||leucine carboxyl methyltransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -3.09495615446656 -5.77143988590417 -34.4332648144935 1.1476878575929 -10.5793143912433 Max fold change at or above threshold 2 34.4332648144935 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773235_at YLR460C.S1 Hypothetical protein /// Hypothetical protein 34.3963199770263 3.79766402393579 3.18674468994141 --- --- --- --- 6.10047435760498 0.177358344197273 7.41796970367432 0.273015022277832 0.194580003619194 0.665526986122131 0.219482004642487 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR460C /GEN=CDC91 /DB_XREF=GI:6323493 /SEG=NC_001144:-1059754,1060884 /DEF=Hypothetical ORF /NOTE=Ylr460cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004452 // YLR460C SGDID:S0004452, Chr XII from 1060884-1059754, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018168 // cdna:Genscan chromosome:SGD1:XII:1059754:1060884:-1 // ensembl // 11 // --- /// GENEFINDER00000024615 // cdna:GeneFinder chromosome:SGD1:XII:1059754:1060884:-1 // ensembl // 11 // --- /// YLR460C // cdna:known chromosome:SGD1:XII:1059754:1060884:-1 gene:YLR460C // ensembl // 11 // --- --- No cerevisiae_gene -7.27197759625875 -34.3963199770263 -1.56776975038956 1.21596604933302 -22.3448303566127 Max fold change at or above threshold 2 34.3963199770263 Max fold change at or above threshold 0.684445514094014 -0.869860667321087 1.03017420752932 -0.844759054302248 3.4922043569386 3.81077813639979 1.09122426607945 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770595_at SPAP8A3.07c.S1 --- 34.2740325258711 --- --- --- --- 19.1727066040039 3.46574759483337 6.74120378494263 0.559394538402557 0.0676269978284836 0.828612983226776 0.633789002895355 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP8A3.07c /DEF=phospho-2-dehydro-3-deoxyheptonate aldolase (predicted) --- --- --- --- --- --- SPAP8A3.07c // |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.5883874199251 -5.53205508461896 -1.80546965332519 -2.84410725675267 -34.2740325258711 Max fold change at or above threshold 3 34.2740325258711 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776086_at SPBC800.11.S1 --- 34.2690439940125 --- --- --- --- 6.8508415222168 5.63289260864258 5.12176847457886 4.83213043212891 0.111571997404099 0.194580003619194 0.194580003619194 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC800.11 /DEF=inosine-uridine preferring nucleoside hydrolase (predicted) --- --- --- --- --- --- SPBC800.11 // |||inosine-uridine preferring nucleoside hydrolase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.43775940659209 -1.21622086522749 -34.2690439940125 -1.33759297325132 -1.41776833602534 Max fold change at or above threshold 4 34.2690439940125 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771434_at SPBC1D7.01.S1 --- 34.1806135554173 --- --- --- --- 7.69364595413208 0.225088000297546 0.566164791584015 0.283933043479919 0.091064453125 0.943848013877869 0.919434010982513 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1D7.01 /DEF=prefoldin (subunit 1) (predicted) --- --- --- --- --- --- SPBC1D7.01 // |||prefoldin |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.06938372587619 -34.1806135554173 -2.58405084518696 -13.5890575826992 -27.0966910361604 Max fold change at or above threshold 1 34.1806135554173 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779040_at SPCC70.02c.S1 --- 34.0953592853214 --- --- --- --- 3.96508026123047 0.935325026512146 4.38417148590088 1.9181535243988 0.303710997104645 0.567627012729645 0.266845703125 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC70.02c /GEN=inh1 /DEF=ATPase inhibitor --- --- --- --- --- --- SPCC70.02c // |||ATPase inhibitor|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -34.0953592853214 -4.23925389446315 -2.58335016784415 1.10569552116465 -2.06713394459561 Max fold change at or above threshold 2 34.0953592853214 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769398_at SPAC806.02c.S1 --- 33.9683321575631 --- --- --- --- 7.03219699859619 0.73562890291214 5.75558614730835 6.60347890853882 0.125 0.696289002895355 0.194580003619194 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC806.02c /DEF=WD repeat protein --- --- --- --- --- --- SPAC806.02c // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.28446226186392 -9.55943543104108 -33.9683321575631 -1.22180379523723 -1.06492306494733 Max fold change at or above threshold 3 33.9683321575631 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771850_at SPAC26A3.09c.S1 --- 33.9629365411029 --- --- --- --- 10.5432729721069 0.31043466925621 4.35303401947021 3.27165174484253 0.129638999700546 0.665526986122131 0.24609400331974 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26A3.09c /GEN=rga2 /DEF=GTPase activating protein --- --- --- --- --- --- SPAC26A3.09c // |rga2||GTPase activating protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -30.1987767641528 -33.9629365411029 -22.5066135458978 -2.42205159090167 -3.22261468957614 Max fold change at or above threshold 3 33.9629365411029 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773824_at SPBC3E7.13c.S1 --- 33.81086426768 --- --- --- --- 0.178958207368851 6.05073165893555 0.461924105882645 0.857471466064453 0.665526986122131 0.030273400247097 0.601073980331421 0.49169921875 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3E7.13c /DEF=involved in mRNA splicing (predicted) --- --- --- --- --- --- SPBC3E7.13c // |||splicing factor|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.49313595480713 33.81086426768 1.44871579447316 2.5811842478427 4.79146208867146 Max fold change at or above threshold 1 33.81086426768 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1778745_at SPBC21.02.S1 --- 33.7392420821861 --- --- --- --- 6.88066101074219 2.00118613243103 1.78405904769897 1.04062139987946 0.601073980331421 0.828612983226776 0.850341975688934 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21.02 /DEF=TLDc domain (SMART) --- --- --- --- --- --- SPBC21.02 // |||TLDc domain |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.30558976909548 -3.4382913709199 -33.7392420821861 -3.85674511144497 -6.61206949188171 Max fold change at or above threshold 1 33.7392420821861 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774946_s_at YAR064W.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /// Hypothetical protein 33.7327854687879 3.73555493354797 4.91383981704712 --- --- --- --- 6.96823978424072 4.68117523193359 2.78993463516235 2.85943984985352 0.171387001872063 0.466064006090164 0.533936023712158 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR064W /GEN=FLO1 /DB_XREF=GI:6319346 /SEG=NC_001133:+220191,220490 /DEF=Hypothetical ORF /NOTE=Yar064wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000089 // YAR064W SGDID:S0000089, Chr I from 220189-220488, Uncharacterized ORF // sgd // 10 // --- /// S0028652 // YHR213W-B SGDID:S0028652, Chr VIII from 540799-541098, Uncharacterized ORF // sgd // 10 // --- /// YAR064W // cdna:known chromosome:SGD1:I:220189:220488:1 gene:YAR064W // ensembl // 10 // --- /// YHR213W-B // cdna:known chromosome:SGD1:VIII:540799:541098:1 gene:YHR213W-B // ensembl // 10 // --- --- No cerevisiae_gene -12.5185894220035 -1.48856631913829 -33.7327854687879 -2.49763549884574 -2.43692476503665 Max fold change at or above threshold 4 33.7327854687879 Max fold change at or above threshold 1.34333295068537 0.181146498497196 -0.779899483864149 -0.744579965318417 4.32469737529755 1.96789813545066 0.455037188657684 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776277_x_at SPAC1834.03c.S1 --- 33.7032630190978 --- --- --- --- 7.89831686019897 0.398918062448502 0.267224371433258 1.00457167625427 0.398925989866257 0.696289002895355 0.601073980331421 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1834.03c /GEN=hhf1 /DEF=histone H4 --- --- --- --- --- --- SPAC1834.03c // |hhf1|h4.1|histone H4|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -33.7032630190978 -19.7993462911161 -1.50554140005234 -29.556873191754 -7.86237263790801 Max fold change at or above threshold 1 33.7032630190978 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770401_at SPBC776.01.S1 --- 33.6590795363579 --- --- --- --- 10.221622467041 0.578305661678314 0.679159224033356 0.762313067913055 0.274170011281967 0.888427972793579 0.904784977436066 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC776.01 /GEN=rpl29 /DEF=60S ribosomal protein L29 --- --- --- --- --- --- D87869 // Schizosaccharomyces pombe mRNA for ribosomal protein L43 homolog, partial cds. // gb // 10 // --- /// SPBC776.01 // |rpl29||60S ribosomal protein L29|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -13.1026882113956 -17.675120864936 -33.6590795363579 -15.0504065988199 -13.4086937470772 Max fold change at or above threshold 1 33.6590795363579 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771760_at SPAC6G9.13c.S1 --- 33.5976243019104 --- --- --- --- 3.35976243019104 0.40452367067337 0.385288089513779 0.0848564878106117 0.219482004642487 0.725830018520355 0.466064006090164 0.998046875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G9.13c /DEF=sequence orphan --- --- --- --- --- --- SPAC6G9.13c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.88880496363527 -8.3054779578124 -17.8806452009423 -8.72013052474826 -33.5976243019104 Max fold change at or above threshold 1 33.5976243019104 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775194_at SPAC20G4.05c.S1 --- 33.5593614448913 --- --- --- --- 4.05349540710449 1.79236674308777 7.53983211517334 0.12078583240509 0.334473013877869 0.828612983226776 0.274170011281967 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20G4.05c /DEF=conserved protein (mainly fungal and bacterial) --- --- --- --- --- --- SPAC20G4.05c // |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -9.45951553454751 -2.26153236927472 -1.62353732984057 1.86008157353735 -33.5593614448913 Max fold change at or above threshold 2 33.5593614448913 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778771_at SPAC1250.05.S1 --- 33.5445847702736 --- --- --- --- 13.5410089492798 5.15578985214233 1.68811821937561 5.17524385452271 0.0676269978284836 0.665526986122131 0.634033203125 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1250.05 /GEN=rpl3002 /DEF=60S ribosomal protein L30 --- --- --- --- --- --- SPAC1250.05 // |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.33955965200501 -2.62636944825306 -33.5445847702736 -8.02136295542633 -2.61649679317935 Max fold change at or above threshold 3 33.5445847702736 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770509_at SPBC1706.02c.S1 --- 33.3565206318026 --- --- --- --- 0.102740235626698 0.359847754240036 3.42705678939819 0.400234043598175 0.828612983226776 0.919434010982513 0.111571997404099 0.747314453125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1706.02c /GEN=wtf2 /DEF=wtf element --- --- --- --- --- --- SPBC1706.02c // |wtf2|SPBC1706.02|wtf element|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.9355717705589 3.50250076851613 3.36083940598254 33.3565206318026 3.89559203516341 Max fold change at or above threshold 1 33.3565206318026 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775019_at SPCC338.16.S1 --- 33.3379750822085 --- --- --- --- 0.27829846739769 7.80840635299683 9.277907371521 3.39851331710815 0.976073980331421 0.0676269978284836 0.0676269978284836 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC338.16 /GEN=pof3 /DEF=F-box protein --- --- --- --- --- --- SPCC338.16 // |pof3||F-box protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 9.08843692437054 28.0576692570807 11.7898867944572 33.3379750822085 12.2117572147879 Max fold change at or above threshold 3 33.3379750822085 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770550_x_at SPBC1348.13.S1 --- 33.3214113102005 --- --- --- --- 0.148113071918488 0.637300550937653 0.512229323387146 0.0962138622999191 0.953857004642487 0.525390625 0.432372987270355 0.84521484375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1348.13 /DEF=similar to fragment of cox1 intron protein --- --- --- --- --- --- SPBC1348.13 // ||SPAC1348.13|similar to fragment of cox1 intron protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 33.3214113102005 4.30279746873648 -1.38265508391467 3.45836675151162 -1.48113071918488 Max fold change at or above threshold 0 33.3214113102005 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779121_at SPCC24B10.22.S1 --- 33.295472607319 --- --- --- --- 4.71967220306396 1.01734304428101 0.827977001667023 0.141751170158386 0.111571997404099 0.753906011581421 0.725830018520355 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC24B10.22 /GEN=mip1 /DEF=DNA polymerase gamma catalytic subunit --- --- --- --- --- --- SPCC24B10.22 // ||SPCPB16A4.01|DNA polymerase gamma catalytic subunit|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -10.4527524013337 -4.63921410737077 -6.24857985852917 -5.70024553044532 -33.295472607319 Max fold change at or above threshold 1 33.295472607319 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780191_at SPAC637.06.S1 --- 33.2309445600726 --- --- --- --- 0.240481242537498 1.41860437393188 6.58512210845947 5.42487192153931 0.780517995357513 0.533936023712158 0.24609400331974 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC637.06 /DEF=galactosyltransferase --- --- --- --- --- --- D89166 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0665. // gb // 11 // --- /// SPAC637.06 // |||alpha-1,2-galactosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.06140066226298 5.89902297145142 33.2309445600726 27.383100814745 22.5583994173408 Max fold change at or above threshold 2 33.2309445600726 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1774131_at SPBC8D2.10c.S1 --- 33.1883380278034 --- --- --- --- 9.75365734100342 3.53719592094421 3.31776666641235 5.51437711715698 0.129638999700546 0.432372987270355 0.601073980331421 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8D2.10c /DEF=zinc finger protein (inferred from context) --- --- --- --- --- --- SPBC8D2.10c // |rmt3|rmt3|type I ribosomal protein arginine methytransferase Rmt1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -33.1883380278034 -2.757454650236 -4.46414838459472 -2.93982619083652 -1.76876864490401 Max fold change at or above threshold 4 33.1883380278034 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771030_at SPAC10F6.02c.S1 --- 33.1185440257682 --- --- --- --- 0.258161455392838 0.688860654830933 8.54993152618408 0.618189811706543 0.850341975688934 0.780517995357513 0.24609400331974 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC10F6.02c /GEN=prp22 /DEF=ATP-dependent --- --- --- --- --- --- SPAC10F6.02c // |prp22||ATP-dependent RNA helicase Prp22|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.28188140342414 2.66833270591348 3.12333204155263 33.1185440257682 2.39458601891541 Max fold change at or above threshold 1 33.1185440257682 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775267_at SPBC16H5.15.S1 --- 33.0399983103507 --- --- --- --- 0.136872202157974 4.52225732803345 3.32582211494446 0.195099964737892 0.976073980331421 0.432372987270355 0.567627012729645 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16H5.15 /DEF=sequence orphan --- --- --- --- --- --- SPBC16H5.15 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 16.6146317097966 33.0399983103507 26.8543141254029 24.2987404491811 1.42541700697351 Max fold change at or above threshold 2 33.0399983103507 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776645_at SPAC24C9.03.S1 --- 33.0342951633916 --- --- --- --- 8.54771614074707 1.05934464931488 0.350456118583679 0.258752793073654 0.432372987270355 0.904784977436066 0.888427972793579 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24C9.03 /DEF=diphosphomevalonate decarboxylase activity (predicted) --- --- --- --- --- --- SPAC24C9.03 // |mvd1||diphosphomevalonate decarboxylase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -6.78211280392008 -8.06887177489896 -1.53398024687639 -24.3902608272086 -33.0342951633916 Max fold change at or above threshold 1 33.0342951633916 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772960_at SPCC1682.10.S1 --- 32.8272694644982 --- --- --- --- 12.8115882873535 11.6444320678711 5.75826358795166 0.454799383878708 0.24609400331974 0.171387001872063 0.633789002895355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1682.10 /GEN=rpn8 /DEF=19S proteasome regulatory subunit --- --- --- --- --- --- SPCC1682.10 // |rpn8||19S proteasome regulatory subunit|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -32.8272694644982 -1.1002329879791 -1.95168754226755 -2.22490479841179 -28.1697573512331 Max fold change at or above threshold 3 32.8272694644982 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774625_at SPBC215.03c.S1 --- 32.5637648910959 --- --- --- --- 0.253363639116287 8.25047397613525 5.89726972579956 2.90985012054443 0.423095703125 0.303710997104645 0.171387001872063 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC215.03c /GEN=csn1 /DEF=COP9signalosome complex (subunit 1) --- --- --- --- --- --- SPBC215.03c // |csn1||COP9/signalosome complex subunit 1 Csn1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 16.3048224701766 32.5637648910959 29.6904783441646 23.2759118331611 11.4848765619793 Max fold change at or above threshold 3 32.5637648910959 Max fold change at or above threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1777715_at SPCC1322.06.S1 --- 32.5086935134439 --- --- --- --- 0.201657727360725 6.55562925338745 2.60888195037842 3.20565414428711 0.84521484375 0.219482004642487 0.5 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1322.06 /GEN=kap113 /DEF=karyopherin --- --- --- --- --- --- SPCC1322.06 // |kap113||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 13.2179669269707 32.5086935134439 3.89302432915755 12.9371781806886 15.8965103209402 Max fold change at or above threshold 3 32.5086935134439 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772895_at SPAC13G6.04.S1 --- 32.5048159599533 --- --- --- --- 0.156916782259941 0.600857019424438 0.466417729854584 3.79254937171936 0.98828125 0.665526986122131 0.725830018520355 0.0239257998764515 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G6.04 /GEN=tim8 /DEF=TIM22 inner membrane protein import complex --- --- --- --- --- --- AF143537 // Schizosaccharomyces pombe small zinc finger protein Tim8 (tim8) mRNA, complete cds. // gb // 11 // --- /// SPAC13G6.04 // |tim8||TIM22 inner membrane protein import complex|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.5728347172648 3.8291444087165 32.5048159599533 2.97238907870248 24.1691762799265 Max fold change at or above threshold 1 32.5048159599533 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1772530_at SPAC4A8.02c.S1 --- 32.4519576374979 --- --- --- --- 6.18191146850586 1.8740406036377 6.36646223068237 0.412012934684753 0.194580003619194 0.665526986122131 0.194580003619194 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4A8.02c /DEF=conserved protein (broad species distribution) --- --- --- --- --- --- SPAC4A8.02c // |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.14669609287212 -3.29870732603454 -32.4519576374979 1.02985334926207 -15.0041684328087 Max fold change at or above threshold 2 32.4519576374979 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772339_at SPAC3H1.07.S1 --- 32.3667314165025 --- --- --- --- 10.8597030639648 5.51999092102051 1.57786858081818 0.335520535707474 0.334473013877869 0.725830018520355 0.696289002895355 0.718505859375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H1.07 /GEN=aru1 /DEF=arginase --- --- --- --- --- --- SPAC3H1.07 // |||arginase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -12.8152911652674 -1.96734074735709 -1.06731887405744 -6.88251429554021 -32.3667314165025 Max fold change at or above threshold 2 32.3667314165025 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777410_at SPBC359.02.S1 --- 32.3258915300075 --- --- --- --- 6.00175619125366 7.06419515609741 5.63625431060791 3.55151128768921 0.334473013877869 0.601073980331421 0.665526986122131 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC359.02 /DEF=alanine racemase (predicted) --- --- --- --- --- --- SPBC359.02 // |alr2||alanine racemase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -32.3258915300075 1.1770213469171 -2.64061014386092 -1.06484836568816 -1.68991612445605 Max fold change at or above threshold 4 32.3258915300075 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771060_at SPBC646.04.S1 --- 32.3089752252439 --- --- --- --- 3.34135174751282 0.103418685495853 0.651865541934967 2.21631813049316 0.696289002895355 0.99975597858429 0.943848013877869 0.71875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC646.04 /GEN=pla1 /DEF=poly(A) polymerase --- --- --- --- --- --- X79705 // S.pombe pla1 mRNA. // gb // 11 // --- /// SPBC646.04 // |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.79468339448577 -32.3089752252439 -9.6722597876742 -5.1258296881202 -1.50761377689462 Max fold change at or above threshold 1 32.3089752252439 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774582_at SPBC27.03.S1 --- 32.3013967624765 --- --- --- --- 0.211368963122368 6.82751274108887 3.68327975273132 3.07901453971863 0.888427972793579 0.194580003619194 0.0952147990465164 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC27.03 /GEN=meu25 /DEF=meiotic expression upregulated --- --- --- --- --- --- AB054309 // Schizosaccharomyces pombe mRNA for Meu25, partial cds. // gb // 10 // --- /// SPBC27.03 // |meu25||meiotic expression upregulated|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 13.3845318603504 32.3013967624765 -1.02484262749923 17.4258306343631 14.5670135020537 Max fold change at or above threshold 3 32.3013967624765 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772423_at SPAC16E8.04c.S1 --- 32.1688380156053 --- --- --- --- 13.098518371582 6.27880954742432 5.53795003890991 4.12852907180786 0.171387001872063 0.432372987270355 0.366210997104645 0.108154296875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16E8.04c /DEF=chorismate mutase (predicted) --- --- --- --- --- --- SPAC16E8.04c // |||chorismate mutase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -32.1688380156053 -2.08614678828016 1.039519564621 -2.36522870006974 -3.17268405859772 Max fold change at or above threshold 4 32.1688380156053 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779433_at SPCC2H8.04.S1 --- 32.0875144004822 --- --- --- --- 3.20875144004822 0.620703220367432 0.07602858543396 3.37954664230347 0.303710997104645 0.780517995357513 0.932372987270355 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC2H8.04 /DEF=hypothetical protein --- --- --- --- --- --- SPCC2H8.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.12815485264515 -5.16954211732423 -9.43663065798401 -32.0875144004822 1.05322793162585 Max fold change at or above threshold 2 32.0875144004822 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776889_at SPAC16E8.01.S1 --- 31.8701285253037 --- --- --- --- 0.201461136341095 2.13272547721863 6.42059230804443 0.862065970897675 0.725830018520355 0.366210997104645 0.129638999700546 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16E8.01 /DEF=actin cortical patch component (predicted) --- --- --- --- --- --- SPAC16E8.01 // |||actin cortical patch component |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 18.0410898718534 10.5862873403419 26.2785449637377 31.8701285253037 4.27906834317715 Max fold change at or above threshold 1 31.8701285253037 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-AF292559-2_s_at AFFX-Sc-AF292559-2 --- 31.6810776865586 --- --- --- --- 7.89856815338135 0.362129181623459 6.99920415878296 0.327570229768753 0.0239257998764515 0.929931640625 0.0805663987994194 0.601073980331421 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL AF292559 /FEA=CDS_2 /DB_XREF=AAG34045.1 GI:11321078 /PROD=mob /GEN=mob --- --- --- --- --- --- AFFX-Sc-AF292559-2 // --- // affx // --- // --- --- No No -31.6810776865586 -21.8114655051309 -2.63736683302032 -1.12849517947977 -24.1125945998124 Max fold change at or above threshold 2 31.6810776865586 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1773239_at SPAC19D5.04.S1 --- 31.6369038491993 --- --- --- --- 6.37650775909424 14.7463655471802 0.627333402633667 7.10029172897339 0.194580003619194 0.030273400247097 0.334473013877869 0.030273400247097 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19D5.04 /GEN=ptr1 /DEF=HECT domain --- --- --- --- --- --- SPAC19D5.04 // |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.96591980859028 2.31260842208633 -31.6369038491993 -10.1644639554094 1.11350789448141 Max fold change at or above threshold 3 31.6369038491993 Max fold change at or above threshold AAPAAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1774774_at SPAPB1E7.07.S1 --- 31.408502007874 --- --- --- --- 12.7418441772461 0.864976763725281 0.460491299629211 2.94447827339172 0.601073980331421 0.828612983226776 0.753906011581421 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1E7.07 /DEF=glutamate synthase (predicted) --- --- --- --- --- --- SPAPB1E7.07 // |||glutamate synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- D89165 // gb // 8 // Cross Hyb Matching Probes No No -4.61403263094952 -14.7308514073483 -31.408502007874 -27.670108398369 -4.32736905970403 Max fold change at or above threshold 2 31.408502007874 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772083_at SPAPJ696.01c.S1 --- 31.3407953245539 --- --- --- --- 6.20671129226685 5.80117082595825 9.09114170074463 3.7353413105011 0.303710997104645 0.303710997104645 0.0676269978284836 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPJ696.01c /GEN=vps17 /DEF=retromer complex (predicted) --- --- --- --- --- --- SPAPJ696.01c // |vps17||sorting nexin |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.24090526504622 -1.06990665823767 -31.3407953245539 1.46472765892488 -1.66161825020328 Max fold change at or above threshold 4 31.3407953245539 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772078_at SPCC285.03.S1 --- 31.2943457897276 --- --- --- --- 0.37197333574295 11.6406621932983 4.18362140655518 3.88660860061646 0.466064006090164 0.171387001872063 0.334473013877869 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC285.03 /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPCC285.03 // |||ATP-dependent RNA helicase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- D89259 // gb // 6 // Cross Hyb Matching Probes No No 22.861432501634 31.2943457897276 12.360860207955 11.2471002745375 10.4486215197486 Max fold change at or above threshold 3 31.2943457897276 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776048_at SPAC4D7.03.S1 --- 31.1404347525853 --- --- --- --- 9.74374294281006 0.5243159532547 0.910852253437042 5.20400905609131 0.432372987270355 0.633789002895355 0.567627012729645 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4D7.03 /GEN=pop2 /DEF=F-box protein --- --- --- --- --- --- AF038867 // Schizosaccharomyces pombe F-box/WD-repeat protein Pop2p (pop2) mRNA, complete cds. // gb // 11 // --- /// SPAC4D7.03 // |pop2|sud1|F-box protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.02924605086653 -18.5837239594287 -31.1404347525853 -10.697391268499 -1.87235318728067 Max fold change at or above threshold 2 31.1404347525853 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779722_at SPBC1683.08.S1 --- 30.8825851217586 --- --- --- --- 7.47442770004272 1.14215326309204 4.77216625213623 0.242027267813683 0.334473013877869 0.725830018520355 0.432372987270355 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1683.08 /GEN=ght4 /DEF=hexose transporter (PMID 10735857) --- --- --- --- --- --- SPBC1683.08 // |ght4||hexose transporter |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -11.8210234208811 -6.54415474838108 -1.13746322295533 -1.56625467453001 -30.8825851217586 Max fold change at or above threshold 2 30.8825851217586 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769623_at SPAC20H4.10.S1 --- 30.7760274707188 --- --- --- --- 4.69077110290527 0.537929773330688 0.15241639316082 0.22976641356945 0.24609400331974 0.303710997104645 0.398925989866257 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20H4.10 /GEN=ufd2 /DEF=ubiquitin-protein ligase (E4) (predicted) --- --- --- --- --- --- AF059906 // Schizosaccharomyces pombe ubiquitin fusion degradation protein-2 (ufd2) mRNA, complete cds. // gb // 10 // --- /// SPAC20H4.10 // |ufd2||ubiquitin-protein ligase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- AB032715 // gb // 5 // Cross Hyb Matching Probes No No -7.15111260214891 -8.72004364781954 1.12187052085642 -30.7760274707188 -20.4153907006405 Max fold change at or above threshold 1 30.7760274707188 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777340_at SPAC688.09.S1 --- 30.7736688471286 --- --- --- --- 9.22610759735107 0.368954211473465 0.299805253744125 1.95757639408112 0.24609400331974 0.696289002895355 0.805419981479645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC688.09 /DEF=mitochondrial carrier --- --- --- --- --- --- SPAC688.09 // |||mitochondrial carrier|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.03424448677049 -25.0061045800384 -15.5271605235493 -30.7736688471286 -4.71302556837471 Max fold change at or above threshold 1 30.7736688471286 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777781_at SPCP20C8.02c.S1 --- 30.5964072482866 --- --- --- --- 0.161773175001144 0.132994011044502 0.12244563549757 0.639863729476929 0.953857004642487 0.962401986122131 0.991455078125 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP20C8.02c /DEF=33896 domain --- --- --- --- --- --- SPCP20C8.02c // |||33896 domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 30.5964072482866 -1.21639443558862 -1.61773175001144 -1.32118367750523 3.95531415806361 Max fold change at or above threshold 0 30.5964072482866 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774628_at SPCC1450.10c.S1 --- 30.5479534400424 --- --- --- --- 6.16855192184448 1.90428555011749 0.387782543897629 0.224040016531944 0.303710997104645 0.633789002895355 0.919434010982513 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1450.10c /DEF=iron only hydrogenase large subunit (predicted) --- --- --- --- --- --- SPCC1450.10c // |||iron hydrogenase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -30.5479534400424 -3.23929986312394 -29.8750640402358 -15.9072449725146 -27.5332595369852 Max fold change at or above threshold 1 30.5479534400424 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771866_x_at SPAC19B12.04.S1 --- 30.5328043665121 --- --- --- --- 12.4875469207764 0.408987879753113 1.32554948329926 2.2918758392334 0.111571997404099 0.696289002895355 0.665526986122131 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19B12.04 /GEN=rps3001 /DEF=40S ribosomal protein S30 --- --- --- --- --- --- AJ002731 // Schizosaccharomyces pombe mRNA for ribosomal protein S30. // gb // 11 // --- /// SPAC19B12.04 // |rps3001|rps30-1|40S ribosomal protein S30|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -14.5581293217935 -30.5328043665121 -9.93343291439998 -9.42065692613392 -5.44861405971856 Max fold change at or above threshold 1 30.5328043665121 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779903_at SPAC144.14.S1 --- 30.4775428771973 --- --- --- --- 0.0867379680275917 2.75462436676025 3.04775428771973 0.144813969731331 0.985840022563934 0.725830018520355 0.149657994508743 0.62548828125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC144.14 /GEN=klp8 /DEF=kinesin-like protein --- --- --- --- --- --- SPAC144.14 // |klp8||kinesin-like protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 13.3011484146118 27.5462436676025 1 30.4775428771973 1.44813969731331 Max fold change at or above threshold 2 30.4775428771973 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771341_at YOL154W.S1 Putative GPI-anchored protein; transcription is induced under low-zinc conditions, as mediated by the Zap1p transcription factor, and at alkaline pH 30.4517387066134 6420.19677734375 256.556999206543 ZPS1 --- 324 // vacuole (sensu Fungi) // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 244.835189819336 7455.6572265625 5384.736328125 268.27880859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL154W /GEN=ZPS1 /DB_XREF=GI:6324419 /SEG=NC_001147:+34657,35406 /DEF=Putative GPI-anchored protein; transcription is induced under low-zinc conditions, as mediated by the Zap1p transcription factor, and at alkaline pH /NOTE=Zps1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 11935221]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005514 // ZPS1 SGDID:S0005514, Chr XV from 34657-35406, Verified ORF // sgd // 11 // --- /// GENSCAN00000017347 // cdna:Genscan chromosome:SGD1:XV:34657:35406:1 // ensembl // 11 // --- /// GENEFINDER00000022705 // cdna:GeneFinder chromosome:SGD1:XV:34657:35406:1 // ensembl // 11 // --- /// YOL154W // cdna:known chromosome:SGD1:XV:34657:35406:1 gene:YOL154W // ensembl // 11 // --- --- No cerevisiae_gene 1.25027367453804 30.4517387066134 1.56098846039196 21.9933104064755 1.09575265218906 Max fold change at or above threshold 4 30.4517387066134 Max fold change at or above threshold -0.84577432732497 1.12566448037909 0.55947468869356 -0.839364841747681 3338.37688827515 3657.64436033442 1.09563553868965 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779205_at SPAC26F1.09.S1 --- 30.3615940761629 --- --- --- --- 4.20358657836914 6.58245611190796 1.47970831394196 0.138450786471367 0.194580003619194 0.111571997404099 0.432372987270355 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26F1.09 /GEN=gyp51 /DEF=TBC domain protein --- --- --- --- --- --- SPAC26F1.09 // |gyp51||GTPase activating protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -20.9409667493449 1.5659142470813 -4.6288565009118 -2.84082108531968 -30.3615940761629 Max fold change at or above threshold 2 30.3615940761629 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776892_at SPCC1840.11.S1 --- 30.3321029858634 --- --- --- --- 7.00633811950684 2.63602256774902 4.21403312683105 1.0152952671051 0.171387001872063 0.366210997104645 0.219482004642487 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1840.11 /DEF=exosome (RNase complex) --- --- --- --- --- --- SPCC1840.11 // ||SPCC965.01|exosome |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.79894682192027 -2.65792038551846 -30.3321029858634 -1.6626205605497 -6.90078871290705 Max fold change at or above threshold 3 30.3321029858634 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769413_at SPBPJ4664.01.S1 --- 30.3284750969876 --- --- --- --- 7.3689079284668 8.26692867279053 7.78911352157593 4.29364585876465 0.149657994508743 0.194580003619194 0.0952147990465164 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPJ4664.01 /GEN=dps1 /DEF=polyprenyl synthetase (PMID 9133618) --- --- --- --- --- --- D84311 // Schizosaccharomyces pombe dps1 mRNA for decaprenyl diphosphate synthase subunit 1, complete cds. // gb // 10 // --- /// SPBPJ4664.01 // |dps1|SPBPJ694.01|decaprenyl diphosphate synthase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- D89265 // gb // 8 // Cross Hyb Matching Probes No No -30.3284750969876 1.12186619144128 -7.90104748038347 1.05702413399492 -1.71623561207886 Max fold change at or above threshold 4 30.3284750969876 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770316_at SPCC4F11.05.S1 --- 30.3276548352533 --- --- --- --- 3.30685877799988 1.50149083137512 2.38319993019104 1.71044230461121 0.014160200022161 0.665526986122131 0.567627012729645 0.24609400331974 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4F11.05 /DEF=dubious --- --- --- --- --- --- SPCC4F11.05 // |||dubious|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- SPNCRNA.124 // sanger // 3 // Negative Strand Matching Probes No No -27.9221743256001 -2.20238359695565 -30.3276548352533 -1.38757086055084 -1.9333354706469 Max fold change at or above threshold 1 30.3276548352533 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1774688_s_at SPCC1906.04.S1 --- 30.3244598515532 --- --- --- --- 4.19960165023804 0.201872944831848 2.1690616607666 0.138488918542862 0.24609400331974 0.962401986122131 0.665526986122131 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1906.04 /GEN=wtf20 /DEF=wtf element --- --- --- --- --- --- SPCC1906.04 // |wtf20||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPCC553.05c // |wtf6|SPCC553.05|wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.83775848295251 -20.8031920955834 -5.65255963446939 -1.936137513377 -30.3244598515532 Max fold change at or above threshold 1 30.3244598515532 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778068_at SPBC56F2.06.S1 --- 30.2314994914652 --- --- --- --- 8.52805709838867 10.1541242599487 6.4310507774353 2.30353426933289 0.129638999700546 0.219482004642487 0.24609400331974 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC56F2.06 /DEF=hypothetical protein --- --- --- --- --- --- SPBC56F2.06 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -30.2314994914652 1.19067264006327 -2.44807898841132 -1.32607522371168 -3.70216202637977 Max fold change at or above threshold 3 30.2314994914652 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773446_at SPCC1906.04.S1 --- 30.0467210215297 --- --- --- --- 0.132231518626213 3.97312355041504 0.229842469096184 0.0300688240677118 0.976073980331421 0.35791015625 0.696289002895355 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1906.04 /GEN=wtf20 /DEF=wtf element --- --- --- --- --- --- SPCC1906.04 // |wtf20||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.52052573911356 30.0467210215297 1.72359255060933 1.73818217837983 -1.32231518626213 Max fold change at or above threshold 1 30.0467210215297 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769613_at SPCC320.12.S1 --- 29.9614108338103 --- --- --- --- 0.455406934022903 13.6446342468262 6.03169679641724 6.83040571212769 0.84521484375 0.274170011281967 0.466064006090164 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC320.12 /DEF=neutral zinc metallopeptidase (predicted) --- --- --- --- --- --- SPCC320.12 // ||SPCC330.17c|neutral zinc metallopeptidase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.94979360210029 29.9614108338103 12.0599034573898 13.2446310009717 14.9984666500141 Max fold change at or above threshold 3 29.9614108338103 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778297_at SPAC4F10.08.S1 --- 29.954739326429 --- --- --- --- 7.06276416778564 0.925930678844452 5.68182468414307 2.23588490486145 0.129638999700546 0.456298828125 0.0676269978284836 0.39013671875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F10.08 /DEF=sequence orphan --- --- --- --- --- --- SPAC4F10.08 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -29.954739326429 -7.62774614682805 -1.18353777328033 -1.24304507097808 -3.15882277859168 Max fold change at or above threshold 2 29.954739326429 Max fold change at or above threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1772667_at SPBC337.14.S1 --- 29.9239032243506 --- --- --- --- 6.02689027786255 2.36042213439941 3.39971876144409 0.231357410550117 0.24609400331974 0.753906011581421 0.567627012729645 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC337.14 /GEN=rpb4 /DEF=DNA-directed RNA polymerase (II subunit) --- --- --- --- --- --- AF149308 // Schizosaccharomyces pombe RNA polymerase II specific subunit Rpb4 (rpb4+) mRNA, complete cds. // gb // 11 // --- /// SPBC337.14 // |rpb4||DNA-directed RNA polymerase II subunit rpb4|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.03356467207892 -2.55331035497006 -29.9239032243506 -1.7727614255076 -26.0501285155808 Max fold change at or above threshold 2 29.9239032243506 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771641_at SPAC16A10.08c.S1 --- 29.7867651351936 --- --- --- --- 6.98630952835083 15.3662433624268 5.8834342956543 0.383296191692352 0.24609400331974 0.0561522990465164 0.0375977009534836 0.725830018520355 A M P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16A10.08c /DEF=sequence orphan --- --- --- --- --- --- SPAC16A10.08c // ||SPAC589.01c|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -29.7867651351936 2.19947932453747 -9.96582801878674 -1.18745432978 -18.2269213203097 Max fold change at or above threshold 3 29.7867651351936 Max fold change at or above threshold AAMAPA No 4 0 AMPA 2 1 1 No No x = 1
1776042_at SPCC1442.02.S1 --- 29.7613592225008 --- --- --- --- 10.9767932891846 10.368932723999 3.4288182258606 6.57754993438721 0.0676269978284836 0.111571997404099 0.111571997404099 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1442.02 /DEF=sequence orphan --- --- --- --- --- --- SPCC1442.02 // ||SPCC1450.18|sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -29.7613592225008 -1.05862325288105 1.1611647852016 -3.20133426916486 -1.66882705546609 Max fold change at or above threshold 4 29.7613592225008 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1774406_at SPAC1B3.11c.S1 --- 29.7476893397396 --- --- --- --- 9.58438014984131 4.48139572143555 12.8615131378174 0.6615309715271 0.366210997104645 0.696289002895355 0.334473013877869 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B3.11c /GEN=ypt4 /DEF=GTPase --- --- --- --- --- --- SPAC1B3.11c // |ypt4||GTPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.3603108515422 -2.13870426661877 -29.7476893397396 1.34192435366103 -14.4881805423507 Max fold change at or above threshold 3 29.7476893397396 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770320_at SPAC2F3.08.S1 --- 29.669909017889 --- --- --- --- 6.23195266723633 4.93804168701172 5.0810399055481 1.27887582778931 0.296142578125 0.274170011281967 0.171387001872063 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F3.08 /GEN=sut1 /DEF=alpha-glucoside transporter (PMID 11136464) --- --- --- --- --- --- SPAC2F3.08 // |sut1||alpha-glucoside transporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.64942284375859 -1.26202917314933 -29.669909017889 -1.22651126208073 -4.87299277366828 Max fold change at or above threshold 3 29.669909017889 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771213_at SPBC725.12.S1 --- 29.5526515283497 --- --- --- --- 9.35252666473389 1.9411678314209 2.01288318634033 0.849531054496765 0.432372987270355 0.865234375 0.665526986122131 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC725.12 /DEF=sequence orphan --- --- --- --- --- --- SPBC725.12 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -29.5526515283497 -4.81798972420021 -3.56451584177165 -4.64633354195676 -11.0090462440764 Max fold change at or above threshold 1 29.5526515283497 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775184_at SPBC1A4.05.S1 --- 29.5185973935012 --- --- --- --- 0.250705510377884 7.400475025177 5.93380928039551 3.71215748786926 0.366210997104645 0.194580003619194 0.171387001872063 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1A4.05 /DEF=hypothetical protein --- --- --- --- --- --- SPBC1A4.05 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 11.0481692183131 29.5185973935012 1.74981054484509 23.6684437906913 14.8068444218637 Max fold change at or above threshold 3 29.5185973935012 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773205_at SPAC1D4.01.S1 --- 29.4221899155859 --- --- --- --- 0.24439649283886 7.19068002700806 0.488768875598907 0.267689853906631 0.725830018520355 0.334473013877869 0.780517995357513 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1D4.01 /DEF=sequence orphan --- --- --- --- --- --- SPAC1D4.01 // ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.26728542736369 29.4221899155859 5.33634775224281 1.99990134850737 1.09530971904384 Max fold change at or above threshold 1 29.4221899155859 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769725_at SPAC22H10.13.S1 --- 29.4163783850425 --- --- --- --- 0.255027860403061 0.688806891441345 0.622384071350098 2.03263258934021 0.991943001747131 0.850341975688934 0.904784977436066 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22H10.13 /GEN=zym1 /DEF=metallothionein (PMID 12050156) --- --- --- --- --- --- SPAC22H10.13 // |zym1||metallothionein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 29.4163783850425 2.70090840409638 3.05592233077782 2.44045521287927 7.970237393388 Max fold change at or above threshold 0 29.4163783850425 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770951_at SPBC2D10.16.S1 --- 29.2883103845419 --- --- --- --- 4.84814453125 0.608390986919403 0.165531724691391 1.4674266576767 0.0952147990465164 0.633789002895355 0.567627012729645 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2D10.16 /DEF=sequence orphan --- --- --- --- --- --- SPBC2D10.16 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.2670344832507 -7.96879742712602 -2.6367749242147 -29.2883103845419 -3.30384111934141 Max fold change at or above threshold 1 29.2883103845419 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779068_s_at SPBCPT2R1.08c.S1 --- 29.2871393734398 --- --- --- --- 5.70849132537842 0.261242598295212 0.629631400108337 0.824490904808044 0.601073980331421 0.976073980331421 0.870360970497131 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBCPT2R1.08c /DEF=helicase --- --- --- --- --- --- SPBCPT2R1.08c // |||RecQ type DNA helicase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- /// SPAC212.11 // |||RecQ type DNA helicase|Schizosaccharomyces pombe|chr 1||Partial|Manual // sanger // 10 // --- --- No No -29.2871393734398 -21.8513035876624 -18.5801430071624 -9.06640190498153 -6.92365590946992 Max fold change at or above threshold 1 29.2871393734398 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771876_at SPBC36.06c.S1 --- 29.2146552205138 --- --- --- --- 0.358935356140137 10.4861726760864 5.94746923446655 1.67046558856964 0.567627012729645 0.0375977009534836 0.0461426004767418 0.303710997104645 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC36.06c /DEF=farnesyl pyrophosphate synthetase --- --- --- --- --- --- SPBC36.06c // |||farnesyl pyrophosphate synthetase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 11.2395521971672 29.2146552205138 17.7658454025416 16.569750326141 4.65394550855406 Max fold change at or above threshold 2 29.2146552205138 Max fold change at or above threshold AAPPPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1779564_at SPCC757.06.S1 --- 29.2027676149807 --- --- --- --- 6.03264284133911 5.73826742172241 6.32080698013306 0.206577777862549 0.0561522990465164 0.0676269978284836 0.0676269978284836 0.828612983226776 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC757.06 /DEF=sequence orphan --- --- --- --- --- --- SPCC757.06 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -9.62497032938943 -1.05130040097161 -1.53696629609337 1.0477674787606 -29.2027676149807 Max fold change at or above threshold 3 29.2027676149807 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1769399_at SPBC23G7.12c.S1 --- 29.1913155862132 --- --- --- --- 0.748231887817383 1.67341291904449 21.8418731689453 3.47333526611328 0.725830018520355 0.334473013877869 0.0676269978284836 0.043701171875 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23G7.12c /GEN=rpt6 /DEF=19S proteasome regulatory subunit --- --- --- --- --- --- SPBC23G7.12c // |rpt6|let1|19S proteasome regulatory subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.91017623486766 2.23648971166665 1.88629811185121 29.1913155862132 4.64205725880664 Max fold change at or above threshold 2 29.1913155862132 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1777487_at SPAC890.08.S1 --- 29.1739559929352 --- --- --- --- 6.80052947998047 1.23503601551056 1.44545602798462 0.23310275375843 0.432372987270355 0.696289002895355 0.725830018520355 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC890.08 /GEN=rpl31 /DEF=60S ribosomal protein L31 --- --- --- --- --- --- SPAC890.08 // |rpl31||60S ribosomal protein L31|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- U97381 // gb // 7 // Cross Hyb Matching Probes No No -1.56235744273143 -5.5063410253418 -1.48392752368713 -4.70476399718804 -29.1739559929352 Max fold change at or above threshold 1 29.1739559929352 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775525_at SPAC4G8.15c.S1 --- 29.1111207008362 --- --- --- --- 2.91111207008362 0.182684451341629 0.137405753135681 0.127469599246979 0.266845703125 0.981445014476776 0.976073980331421 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G8.15c /DEF=dubious --- --- --- --- --- --- SPAC4G8.15c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -29.1111207008362 -15.9351934371234 -9.59538874597199 -21.186245871445 -22.8376968883631 Max fold change at or above threshold 1 29.1111207008362 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776101_at SPBC651.09c.S1 --- 29.0821992944602 --- --- --- --- 8.67356109619141 10.03466796875 7.27488231658936 0.338254660367966 0.274170011281967 0.24609400331974 0.303710997104645 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC651.09c /DEF=RNA polymerase II associated Paf1 complex (PMID 11927560) (predicted) --- --- --- --- --- --- SPBC651.09c // |||RNA polymerase II associated Paf1 complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.6241587756104 1.15692595664729 -29.0821992944602 -1.19226136159104 -25.6421037532964 Max fold change at or above threshold 3 29.0821992944602 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779110_at SPBC1271.11.S1 --- 29.0754507584855 --- --- --- --- 8.52149295806885 5.00139045715332 1.28196179866791 0.293082058429718 0.303710997104645 0.303710997104645 0.828612983226776 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1271.11 /DEF=mitochondrial carrier --- --- --- --- --- --- SPBC1271.11 // |||mitochondrial carrier|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.01439561458455 -1.70382477254517 -2.56024573729713 -6.64722846415827 -29.0754507584855 Max fold change at or above threshold 2 29.0754507584855 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773016_at SPAC8C9.12c.S1 --- 29.0628179946787 --- --- --- --- 10.6451139450073 9.97704792022705 0.554001808166504 0.366279482841492 0.274170011281967 0.274170011281967 0.601073980331421 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8C9.12c /DEF=mitochondrial carrier --- --- --- --- --- --- SPAC8C9.12c // |||mitochondrial carrier|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -13.3466586156182 -1.06696029027042 -2.45058978139624 -19.2149444064774 -29.0628179946787 Max fold change at or above threshold 2 29.0628179946787 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777636_at SPCC417.06c.S1 --- 29.048456504631 --- --- --- --- 4.81712245941162 3.39393258094788 0.876422762870789 1.96905815601349 0.194580003619194 0.144775390625 0.601073980331421 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC417.06c /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPCC417.06c // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -29.048456504631 -1.41933357381727 -1.09854172076602 -5.49634567184537 -2.44640943930486 Max fold change at or above threshold 2 29.048456504631 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775382_at SPAC1805.11c.S1 --- 28.9644959447753 --- --- --- --- 5.51694250106812 1.36398720741272 0.574539959430695 1.56890642642975 0.219482004642487 0.633789002895355 0.601073980331421 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1805.11c /GEN=rps2602 /DEF=40S ribosomal protein S26 --- --- --- --- --- --- AB029514 // Schizosaccharomyces pombe mRNA for ribosomal protein S26 homolog, partial cds. // gb // 11 // --- /// SPAC1805.11c // |rps2602|rps26-2|40S ribosomal protein S26|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.1531459168946 -4.04471718729161 -28.9644959447753 -9.60236518019529 -3.51642545924338 Max fold change at or above threshold 1 28.9644959447753 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770232_at SPCC1223.09.S1 --- 28.9175075088907 --- --- --- --- 6.56752920150757 0.831786572933197 4.19812345504761 2.88991761207581 0.274170011281967 0.774169921875 0.274170011281967 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1223.09 /DEF=uricase (predicted) --- --- --- --- --- --- SPCC1223.09 // |||uricase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.81408852111576 -7.89569033117228 -28.9175075088907 -1.56439639563508 -2.27256623997324 Max fold change at or above threshold 3 28.9175075088907 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778844_at SPCC4G3.07c.S1 --- 28.8822396167068 --- --- --- --- 13.926155090332 1.04875242710114 3.38059067726135 1.7796448469162 0.24609400331974 0.665526986122131 0.466064006090164 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4G3.07c /DEF=zinc finger protein --- --- --- --- --- --- SPCC4G3.07c // |||zinc finger protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -10.4557141142541 -13.2787822277803 -28.8822396167068 -4.11944432788111 -7.82524396059333 Max fold change at or above threshold 2 28.8822396167068 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774164_at SPAC4F10.15c.S1 --- 28.8815434925016 --- --- --- --- 0.818538904190063 23.6406669616699 5.72648143768311 6.59474039077759 0.870360970497131 0.0561522990465164 0.0805663987994194 0.00585938012227416 A M A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F10.15c /GEN=wsp1 /DEF=Wiskott-Aldrich homolog --- --- --- --- --- --- SPAC4F10.15c // |wsp1||Wiskott-Aldrich homolog|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 4.97461581771647 28.8815434925016 6.5204699637452 6.99597955377503 8.05672199210008 Max fold change at or above threshold 3 28.8815434925016 Max fold change at or above threshold AAMMAP No 4 0 AMAP 2 1 1 No No x = 1
1771018_at SPAC1B3.17.S1 --- 28.8368583536109 --- --- --- --- 9.21070003509521 0.319407194852829 1.10867989063263 2.56749391555786 0.366210997104645 0.991943001747131 0.725830018520355 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B3.17 /DEF=sequence orphan --- --- --- --- --- --- SPAC1B3.17 // |clr2||chromatin silencing protein Clr2|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.46042952410267 -28.8368583536109 -4.07584962249902 -8.30780833396324 -3.58742818406794 Max fold change at or above threshold 2 28.8368583536109 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778349_at SPAC1527.03.S1 --- 28.7310394816209 --- --- --- --- 8.13683319091797 3.49099135398865 4.95197629928589 0.283207058906555 0.366210997104645 0.725830018520355 0.601073980331421 0.84521484375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1527.03 /DEF=RNA-binding protein --- --- --- --- --- --- SPAC1527.03 // |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -14.1516482666659 -2.33080874910251 -1.30587583731422 -1.6431486540215 -28.7310394816209 Max fold change at or above threshold 3 28.7310394816209 Max fold change at or above threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1770457_at SPAC589.09.S1 --- 28.6197329435396 --- --- --- --- 7.93342447280884 9.45334815979004 5.3896222114563 1.01314806938171 0.0561522990465164 0.24609400331974 0.274170011281967 0.696289002895355 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC589.09 /DEF=CRALTRIO domain --- --- --- --- --- --- SPAC589.09 // |||sec14 cytosolic factor family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -28.6197329435396 1.19158481840857 -2.96097787604044 -1.47198155298258 -7.83046892410337 Max fold change at or above threshold 3 28.6197329435396 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1770983_at SPAC688.08.S1 --- 28.5241098774442 --- --- --- --- 5.13924837112427 1.40782976150513 3.69406151771545 0.180172085762024 0.274170011281967 0.4658203125 0.149657994508743 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC688.08 /GEN=srb8 /DEF=RNA polymerase II holoenzyme component (PMID 12738880) --- --- --- --- --- --- SPAC688.08 // |srb8||mediator complex submodule |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.82676393307787 -3.65047572629083 -3.50082154662547 -1.39121894599703 -28.5241098774442 Max fold change at or above threshold 2 28.5241098774442 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774646_at SPBC1604.06c.S1 --- 28.3738422571919 --- --- --- --- 9.34938621520996 1.95977306365967 6.86678457260132 0.329507231712341 0.0952147990465164 0.753906011581421 0.171387001872063 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1604.06c /DEF=involved in ribosome biogenesis and assembly (predicted) --- --- --- --- --- --- SPBC1604.06c // |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.75571430911061 -4.77064737166607 -1.40318467955327 -1.36153772065521 -28.3738422571919 Max fold change at or above threshold 2 28.3738422571919 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Sp-CC338.15-3_at AFFX-r2-Sp-CC338.15-3 --- 28.2182872226694 --- --- --- --- 6.57312965393066 1.03382849693298 0.81299501657486 0.268661439418793 0.725830018520355 0.976073980331421 0.953857004642487 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=SPCC338.15 dolichyl-di-phosphooligosaccharide-protein glycotransferase (oligosaccharyltransferase) (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- AB015170 // Schizosaccharomyces pombe mRNA for oligosaccharyltransferase, partial cds. // gb // 11 // --- /// SPCC338.15 // |||dolichyl-di-phosphooligosaccharide-protein glycotransferase subunit |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- AFFX_control No -28.2182872226694 -6.35804649749054 -12.392274769842 -8.08507988354369 -24.4662191498363 Max fold change at or above threshold 1 28.2182872226694 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778818_at SPBC1271.12.S1 --- 28.1853895364957 --- --- --- --- 0.146986469626427 1.1148294210434 0.719596564769745 0.2547307908535 0.888427972793579 0.567627012729645 0.805419981479645 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1271.12 /GEN=kes1 /DEF=oxysterol binding protein (predicted) --- --- --- --- --- --- AB016222 // Schizosaccharomyces pombe mRNA for KES1, partial cds. // gb // 11 // --- /// SPBC1271.12 // |kes1||oxysterol binding protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.09266212460444 7.58457172198767 28.1853895364957 4.89566533980056 1.73302203597999 Max fold change at or above threshold 0 28.1853895364957 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770051_s_at SPCP20C8.02c.S1 --- 28.183930477194 --- --- --- --- 3.96232914924622 0.414197623729706 1.30659830570221 0.316789120435715 0.696289002895355 0.976073980331421 0.725830018520355 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP20C8.02c /DEF=33896 domain --- --- --- --- --- --- SPCP20C8.02c // |||33896 domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- /// SPCC569.02c // |||33896 domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -28.183930477194 -9.5662768742293 -1.06591146705033 -3.03255341136902 -12.507781655495 Max fold change at or above threshold 1 28.183930477194 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780227_at SPAC1952.09c.S1 --- 28.1641642648793 --- --- --- --- 7.34124231338501 5.86536264419556 10.0258665084839 0.260658979415894 0.303710997104645 0.366210997104645 0.149657994508743 0.84521484375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1952.09c /DEF=acetyl-CoA hydrolase (predicted) --- --- --- --- --- --- D89222 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1318. // gb // 11 // --- /// SPAC1952.09c // |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.12282269152395 -1.25162632879145 -2.03748483783941 1.36569072106558 -28.1641642648793 Max fold change at or above threshold 3 28.1641642648793 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770176_at SPBC1734.07c.S1 --- 28.1600566577052 --- --- --- --- 0.701566457748413 19.7561511993408 11.1983976364136 9.26752758026123 0.219482004642487 0.0239257998764515 0.018554700538516 0.030273400247097 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1734.07c /DEF=TRAPP (predicted) --- --- --- --- --- --- SPBC1734.07c // |||TRAPP |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 6.1835802082728 28.1600566577052 9.54255971709209 15.9619912165604 13.2097643464942 Max fold change at or above threshold 3 28.1600566577052 Max fold change at or above threshold AAPPPP No 4 0 APPP 1 3 0 No No 2 < x = 3
1770930_at SPAC1071.07c.S1 --- 28.1081691128418 --- --- --- --- 9.59574604034424 16.1689510345459 1.98903179168701 3.18620753288269 0.194580003619194 0.171387001872063 0.601073980331421 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1071.07c /GEN=rps1502 /DEF=40S ribosomal protein S15 --- --- --- --- --- --- SPAC1071.07c // |rps1502|rps15-2, rps15|40S ribosomal protein S15|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.24348781946622 1.68501239680222 -28.1081691128418 -4.82433014919562 -3.01165129430931 Max fold change at or above threshold 3 28.1081691128418 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769999_at SPBC3B8.09.S1 --- 28.1041258995907 --- --- --- --- 5.52709007263184 3.80414152145386 3.37508940696716 0.196664720773697 0.303710997104645 0.533936023712158 0.303710997104645 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B8.09 /DEF=ribonucleoprotein (RNP) complex (predicted) (PMID 12068309) --- --- --- --- --- --- SPBC3B8.09 // |||U3 snoRNP protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.28502386174353 -1.45291389435993 -11.5749741439415 -1.63761293588914 -28.1041258995907 Max fold change at or above threshold 3 28.1041258995907 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769589_at SPAC2F3.03c.S1 --- 27.9965808689371 --- --- --- --- 0.227165356278419 5.04008769989014 6.35985326766968 0.173359796404839 0.850341975688934 0.24609400331974 0.366210997104645 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F3.03c /GEN=rpa49 /DEF=localization DNA-directed RNA polymerase I complex (subunit) --- --- --- --- --- --- AJ278613 // Schizosaccharomyces pombe mRNA for Rpa49, subunit specific to nuclear RNA polymerase I (rpa49+ gene). // gb // 11 // --- /// SPAC2F3.03c // |rpa49|rpa51|DNA-directed RNA polymerase I complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 7.99938287190086 22.1868676741047 1.10802083515772 27.9965808689371 -1.3103693070101 Max fold change at or above threshold 2 27.9965808689371 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772471_at SPAC14C4.13.S1 --- 27.9734558218326 --- --- --- --- 9.7752513885498 3.93936634063721 7.55212640762329 7.12816143035889 0.00805663969367743 0.633789002895355 0.0375977009534836 0.014160200022161 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC14C4.13 /GEN=rad17 /DEF=involved in DNA damage checkpoint (PMID 8019001) --- --- --- --- --- --- SPAC14C4.13 // |rad17||RFC related checkpoint protein Rad17|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.08820879777727 -2.4814273523413 -27.9734558218326 -1.29437073228574 -1.37135662317031 Max fold change at or above threshold 4 27.9734558218326 Max fold change at or above threshold PAAAPP No 4 0 PAPP 1 3 0 No No 2 < x = 3
1776742_at SPCC613.03.S1 --- 27.8876467742469 --- --- --- --- 9.95731258392334 0.357051014900208 6.15899896621704 4.76045274734497 0.0952147990465164 0.725830018520355 0.24609400331974 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC613.03 /DEF=EF hand --- --- --- --- --- --- SPCC613.03 // |||EF hand|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -2.63453040550791 -27.8876467742469 -1.5577261343831 -1.61670957221142 -2.09167344208527 Max fold change at or above threshold 3 27.8876467742469 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772874_at YOR010C.S1 Putative cell wall mannoprotein of the Srp1p/Tip1p family of serine-alanine-rich proteins; transcription is induced by cold shock and anaerobiosis 27.8151304769574 3956.75573730469 161.360000610352 TIR2 6950 // response to stress // inferred from direct assay 9277 // cell wall (sensu Fungi) // inferred from sequence similarity --- 149.123992919922 3765.60815429688 4147.9033203125 173.596008300781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR010C /GEN=TIR2 /DB_XREF=GI:6324584 /SEG=NC_001147:-346194,346949 /DEF=cold-shock induced protein of the Srp1p/Tip1p family of serine-alanine-rich proteins /NOTE=Tir2p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence ISS] [pmid 7746155]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to stress [goid GO:0006950] [evidence IDA] [pmid 7746155] --- --- --- --- --- --- S0005536 // TIR2 SGDID:S0005536, Chr XV from 346949-346194, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022583 // cdna:GeneFinder chromosome:SGD1:XV:346194:346949:-1 // ensembl // 11 // --- /// YOR010C // cdna:known chromosome:SGD1:XV:346194:346949:-1 gene:YOR010C // ensembl // 11 // --- --- No cerevisiae_gene 9.97712839161812 25.2515244566913 -1.03214109456072 27.8151304769574 1.16410515103361 Max fold change at or above threshold 4 27.8151304769574 Max fold change at or above threshold -0.869397982760595 0.776818189450422 0.950838164865827 -0.858258371555654 2059.05786895752 2196.84645456963 1.06691826766475 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778894_at SPAC890.05.S1 --- 27.7724197852461 --- --- --- --- 10.0480966567993 17.0268707275391 15.3310241699219 4.39917087554932 0.0952147990465164 0.0676269978284836 0.018554700538516 0.239013671875 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC890.05 /DEF=G-patch domain --- --- --- --- --- --- SPAC890.05 // |||G-patch domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -27.7724197852461 1.69453691670227 -1.14424113853817 1.52576400223496 -2.28408873877731 Max fold change at or above threshold 4 27.7724197852461 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1775723_at SPAC29E6.02.S1 --- 27.7526165870067 --- --- --- --- 7.63221454620361 0.788023889064789 0.275008827447891 1.98514413833618 0.366210997104645 0.888427972793579 0.953857004642487 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29E6.02 /GEN=prp3 /DEF=U4U6 x U5 tri-snRNP complex (predicted) --- --- --- --- --- --- SPAC29E6.02 // |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.29086698828945 -9.68525783559858 -1.02948341600461 -27.7526165870067 -3.84466518013167 Max fold change at or above threshold 1 27.7526165870067 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771797_at SPBC1734.16c.S1 --- 27.7241577424191 --- --- --- --- 0.201369091868401 0.608774542808533 5.58278846740723 0.224007695913315 0.969726979732513 0.976073980331421 0.633789002895355 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1734.16c /GEN=pst3 /DEF=SIN3 family co-repressor --- --- --- --- --- --- SPBC1734.16c // |pst3||SIN3 family co-repressor|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.38019812901417 3.02317767419034 2.23880001044869 27.7241577424191 1.11242343020402 Max fold change at or above threshold 1 27.7241577424191 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779823_at SPAC31G5.15.S1 --- 27.676758347474 --- --- --- --- 7.90180826187134 0.557919204235077 2.76223230361938 0.312310695648193 0.111571997404099 0.888427972793579 0.274170011281967 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31G5.15 /DEF=phosphatidylserine decarboxylase (predicted) --- --- --- --- --- --- SPAC31G5.15 // |||phosphatidylserine decarboxylase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.34055214628141 -14.1629974410093 -27.676758347474 -2.86066028969305 -25.3011131926536 Max fold change at or above threshold 2 27.676758347474 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772411_at SPBC1703.11.S1 --- 27.6365510977608 --- --- --- --- 0.249625071883202 2.99063110351563 6.89877605438232 3.58938074111938 0.822998046875 0.366210997104645 0.274170011281967 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1703.11 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC1703.11 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 16.4872963943827 11.9804917068384 14.8177918470301 27.6365510977608 14.37908746121 Max fold change at or above threshold 3 27.6365510977608 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774692_at SPAC18B11.11.S1 --- 27.6290191929033 --- --- --- --- 0.285941004753113 1.2202376127243 3.66032767295837 6.93332290649414 0.904784977436066 0.601073980331421 0.5 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18B11.11 /DEF=GTPase activating protein (predicted) --- --- --- --- --- --- SPAC18B11.11 // ||SPAC1F5.01|GTPase activating protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 16.3866112854455 4.26744535565258 27.6290191929033 12.8009890575812 24.2473894658114 Max fold change at or above threshold 2 27.6290191929033 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770368_at SPBC16E9.07.S1 --- 27.6191810137814 --- --- --- --- 0.221839994192123 6.12703895568848 0.891706705093384 0.227847307920456 0.932372987270355 0.5 0.870360970497131 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16E9.07 /DEF=hypothetical protein --- --- --- --- --- --- SPBC16E9.07 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.05521641199358 27.6191810137814 14.0728902167802 4.01959397961905 1.02707948920667 Max fold change at or above threshold 1 27.6191810137814 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773301_at SPBC3B9.14c.S1 --- 27.5745168676237 --- --- --- --- 0.284299790859222 7.83942937850952 6.33164691925049 0.887433886528015 0.932372987270355 0.219482004642487 0.219482004642487 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B9.14c /GEN=mrpl3 /DEF=mitochondrial ribosomal protein YmL3 --- --- --- --- --- --- SPBC3B9.14c // |mrpl3||mitochondrial ribosomal protein L3|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 14.7986294485738 27.5745168676237 21.9751413016884 22.2710220788933 3.12147217500926 Max fold change at or above threshold 2 27.5745168676237 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776382_at SPBC1734.01c.S1 --- 27.5560586717314 --- --- --- --- 0.113732099533081 3.13400840759277 2.96476221084595 0.310923427343369 0.998778998851776 0.466064006090164 0.432372987270355 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1734.01c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC1734.01c // ||SPBC337.17c|RNA binding protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.70590055699153 27.5560586717314 2.94334597412725 26.0679458395437 2.73382298066986 Max fold change at or above threshold 2 27.5560586717314 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771306_at SPBC9B6.10.S1 --- 27.5282262982367 --- --- --- --- 10.7761535644531 0.649435997009277 3.00388669967651 0.391458332538605 0.111571997404099 0.805419981479645 0.466064006090164 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC9B6.10 /GEN=cdc37 /DEF=chaperone activity --- --- --- --- --- --- AJ132376 // Schizosaccharomyces pombe mRNA for cdc37 protein. // gb // 11 // --- /// SPBC9B6.10 // |cdc37||chaperone activity|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -17.0135080363797 -16.5930955691992 -16.510198544624 -3.5874034681846 -27.5282262982367 Max fold change at or above threshold 2 27.5282262982367 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776537_at SPBC887.18c.S1 --- 27.5158786728068 --- --- --- --- 0.253086596727371 4.93409395217896 4.87249517440796 5.77098512649536 0.633789002895355 0.334473013877869 0.303710997104645 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC887.18c /DEF=involved in transcriptional regulation (activation) (predicted) --- --- --- --- --- --- SPBC887.18c // |||transcription adaptor protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.91327912736628 19.4956746662252 27.5158786728068 19.252284543763 22.8024130914841 Max fold change at or above threshold 3 27.5158786728068 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773880_at SPBC4F6.11c.S1 --- 27.4678829733008 --- --- --- --- 6.77163457870483 0.267808020114899 3.82222509384155 0.76104336977005 0.219482004642487 0.805419981479645 0.219482004642487 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4F6.11c /DEF=asparagine synthase (predicted) --- --- --- --- --- --- SPBC4F6.11c // |||asparagine synthase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -27.4678829733008 -25.2854062242033 -26.6374747275096 -1.77164725060683 -8.89783006814827 Max fold change at or above threshold 2 27.4678829733008 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773346_at SPAC1751.02c.S1 --- 27.4631494008668 --- --- --- --- 4.16324043273926 0.198938608169556 3.40043520927429 3.3049304485321 0.125 0.888427972793579 0.219482004642487 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1751.02c /GEN=rsm19 /DEF=mitochondrial ribosomal protein subunit s19 --- --- --- --- --- --- SPAC1751.02c // |rsm19||mitochondrial ribosomal protein subunit s19|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.65460720069912 -20.9272622898363 -27.4631494008668 -1.22432576318011 -1.25970591441293 Max fold change at or above threshold 3 27.4631494008668 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770728_at SPAC24C9.02c.S1 --- 27.4154783905344 --- --- --- --- 0.287081658840179 7.87048101425171 2.20625782012939 4.10776901245117 0.969726979732513 0.219482004642487 0.194580003619194 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24C9.02c /DEF=cytochrome c1 heme lyase (predicted) --- --- --- --- --- --- SPAC24C9.02c // |||cytochrome c1 heme lyase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 17.8941693548605 27.4154783905344 18.1783150220568 7.68512286379686 14.3087128207588 Max fold change at or above threshold 2 27.4154783905344 Max fold change at or above threshold APAAAM No 4 0 AAAM 3 0 1 No No x = 1
1770237_at SPAC18B11.05.S1 --- 27.4138051379755 --- --- --- --- 8.98457145690918 0.641145825386047 0.32773894071579 4.00563669204712 0.129638999700546 0.780517995357513 0.870360970497131 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18B11.05 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC18B11.05 // |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.73726222645421 -14.0133041519835 -2.02582478766323 -27.4138051379755 -2.24298211436583 Max fold change at or above threshold 2 27.4138051379755 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779872_at SPAC8C9.17c.S1 --- 27.3482603734673 --- --- --- --- 0.179045051336288 0.144929990172386 0.214572846889496 0.827666223049164 0.98486328125 0.99169921875 0.696289002895355 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8C9.17c /DEF=DASH complex (predicted) --- --- --- --- --- --- SPAC8C9.17c // |spc34||DASH complex subunit Spc34|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.26429473239172 -1.23538993636393 27.3482603734673 1.19842936338116 4.62267019876809 Max fold change at or above threshold 0 27.3482603734673 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1775266_at SPCC162.01c.S1 --- 27.338497663482 --- --- --- --- 7.54506015777588 5.3130087852478 0.796113967895508 5.14213132858276 0.030273400247097 0.149657994508743 0.601073980331421 0.194580003619194 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC162.01c /DEF=RNA-binding protein (predicted) --- --- --- --- --- --- SPCC162.01c // |||RNA-binding protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -27.338497663482 -1.42011061203694 -2.15163459164037 -9.47736186280077 -1.46730211183762 Max fold change at or above threshold 3 27.338497663482 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1773009_x_at SPCC569.02c.S1 --- 27.3217368125916 --- --- --- --- 2.73217368125916 0.0955311730504036 6.18655633926392 1.74098682403564 0.366210997104645 0.95166015625 0.24609400331974 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC569.02c /DEF=33896 domain --- --- --- --- --- --- SPCC569.02c // |||33896 domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -6.03855600339985 -27.3217368125916 -1.16984624719867 2.26433494389448 -1.56932473212285 Max fold change at or above threshold 2 27.3217368125916 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774566_at SPAC343.14c.S1 --- 27.2138763223892 --- --- --- --- 15.6250343322754 11.9402561187744 5.20985317230225 5.37787532806396 0.129638999700546 0.194580003619194 0.398925989866257 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC343.14c /DEF=translation initiation factor --- --- --- --- --- --- SPAC343.14c // |||translation initiation factor eIF2B|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -27.2138763223892 -1.30860127093146 -1.5720915219317 -2.99913141801089 -2.90542888763849 Max fold change at or above threshold 4 27.2138763223892 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780241_at SPCC777.17c.S1 --- 27.2074322538264 --- --- --- --- 0.223570734262466 4.06247901916504 3.5493471622467 6.08278560638428 0.822998046875 0.366210997104645 0.194580003619194 0.00805663969367743 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC777.17c /DEF=mitochondrial ribosomal protein (predicted) --- --- --- --- --- --- SPCC777.17c // |||mitochondrial ribosomal protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 8.76239467678976 18.1708891039191 11.9261088255082 15.8757235107519 27.2074322538264 Max fold change at or above threshold 3 27.2074322538264 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
AFFX-r2-Bs-dap-M_at AFFX-r2-Bs-dap-M --- 27.1894505341671 --- --- --- --- 6.71181631088257 0.246853694319725 4.55473375320435 0.920610308647156 0.0676269978284836 0.870360970497131 0.0239257998764515 0.567627012729645 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=dapB, jojF /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2055-2578 of gb:L38424.1, not 100% identical /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. --- --- --- --- --- --- AFFX-r2-Bs-dap-M // --- // unknown // --- // --- /// AFFX-r2-Bs-dap-M // --- // unknown // --- // --- /// AFFX-r2-Bs-dap-M // --- // unknown // --- // --- /// AFFX-r2-Bs-dap-M // --- // unknown // --- // --- /// AFFX-r2-Bs-dap-M // --- // gb // --- // --- /// L38424 // Bacillus subtilis /REF=L38424 /DEF=B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1439-1846 of L38424 /LEN=1931 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-r2-Bs-dap-M // B. subtilis /GEN=dapB, jojF /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2055-2578 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // --- // --- /// AFFX-r2-Bs-dap-M // B. subtilis /GEN=dapB, jojF /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2055-2578 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-dap-M // --- // unknown // --- // --- /// AFFX-r2-Bs-dap-M // --- // affx // --- // --- /// AFFX-r2-Bs-dap-M // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-dap-M // --- // affx // --- // --- /// AFFX-r2-Bs-dap-M // --- // affx // --- // --- /// AFFX-r2-Bs-dap-M // --- // affx // --- // --- /// AFFX-r2-Bs-dap-M // --- // affx // --- // --- /// AFFX-r2-Bs-dap-M // --- // affx // --- // --- /// AFFX-r2-Bs-dap-M // --- // affx // --- // --- /// AFFX-r2-Bs-dap-M // --- // affx // --- // --- /// AFFX-r2-Bs-dap-M // --- // affx // --- // --- /// AFFX-r2-Bs-dap-M // --- // affx // --- // --- /// AFFX-r2-Bs-dap-M // --- // affx // --- // --- /// AFFX-r2-Bs-dap-M // --- // affx // --- // --- 939026 // gb // 1 // Cross Hyb Matching Probes /// 939027 // gb // 8 // Cross Hyb Matching Probes /// 939024 // gb // 1 // Cross Hyb Matching Probes /// 50812173 // gb // 11 // Negative Strand Matching Probes AFFX_control No -19.4190461720942 -27.1894505341671 -2.1290782018101 -1.47359136111099 -7.29061607049093 Max fold change at or above threshold 2 27.1894505341671 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1776221_at SPAC1B3.02c.S1 --- 27.1265235693647 --- --- --- --- 13.9618873596191 0.572848618030548 5.03827905654907 4.50667095184326 0.018554700538516 0.432372987270355 0.111571997404099 0.129638999700546 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B3.02c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC1B3.02c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -27.1265235693647 -24.3727346460572 -2.49538489046247 -2.77116197870592 -3.09804898312104 Max fold change at or above threshold 3 27.1265235693647 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
AFFX-r2-Sp-TFIID-M_at AFFX-r2-Sp-TFIID-M --- 27.1035635853047 --- --- --- --- 5.01175546646118 3.7802267074585 0.18491131067276 3.67623043060303 0.366210997104645 0.665526986122131 0.932372987270355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=tfIId transcription initiation factor (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPAC29E6.08 // |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- AFFX_control No -7.51653622156748 -1.32578172006796 -17.6791077868069 -27.1035635853047 -1.36328654067506 Max fold change at or above threshold 3 27.1035635853047 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772789_at SPBC354.11c.S1 --- 27.096987683108 --- --- --- --- 0.51594740152359 13.9806203842163 12.9349021911621 6.47212696075439 0.696289002895355 0.432372987270355 0.432372987270355 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC354.11c /DEF=sequence orphan --- --- --- --- --- --- SPBC354.11c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 17.1590412886267 27.096987683108 5.11819130905721 25.070195436522 12.5441603962773 Max fold change at or above threshold 3 27.096987683108 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770993_at SPAC2F3.11.S1 --- 27.0131212043595 --- --- --- --- 0.214496836066246 3.73256754875183 5.79422903060913 3.22771048545837 0.888427972793579 0.432372987270355 0.0805663987994194 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F3.11 /DEF=cytosolic exopolyphosphatase (predicted) --- --- --- --- --- --- SPAC2F3.11 // |||exopolyphosphatase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 9 // --- --- No No 21.6809249610219 17.4015039904787 11.7580118542744 27.0131212043595 15.0478232903236 Max fold change at or above threshold 3 27.0131212043595 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769530_at SPBC2D10.06.S1 --- 26.9958540897094 --- --- --- --- 9.84757041931152 12.4647722244263 1.35260152816772 4.75995349884033 0.171387001872063 0.303710997104645 0.533936023712158 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2D10.06 /GEN=rep1 /DEF=transcription factor --- --- --- --- --- --- SPBC2D10.06 // |rep1|rec16|MBF transcription factor complex subunit Rep1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.88043080494069 1.26577132162287 -26.9958540897094 -7.28046672596278 -2.06883752576799 Max fold change at or above threshold 3 26.9958540897094 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777675_at SPAC1D4.05c.S1 --- 26.9779221479886 8.26994490623474 1.39660914242268 --- --- --- --- 0.383913666009903 10.3571929931641 6.18269681930542 2.40930461883545 0.601073980331421 0.219482004642487 0.0561522990465164 0.334473013877869 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1D4.05c /DEF=similar to S. cerevisiae YDR414C --- --- --- --- --- --- SPAC1D4.05c // |||EXS family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No cerevisiae_gene 7.62475406584612 26.9779221479886 13.800098975276 16.1043936871628 6.27564171881629 Max fold change at or above threshold 2 26.9779221479886 Max fold change at or above threshold -1.01185453349602 1.25622453497011 0.306879080707937 -0.551249082182031 4.83327702432871 4.3972361747948 0.90978360078699 AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
AFFX-r2-TagD_at AFFX-r2-TagD --- 26.9699490122907 --- --- --- --- 14.996865272522 5.73195219039917 13.7339935302734 0.556058347225189 0.274170011281967 0.398925989866257 0.274170011281967 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Clone 76B7, synthetic insert (519 bp)+ poly A tail (21 bp), target sequence 1-519 --- --- --- --- --- --- AFFX-r2-TagD // --- // unknown // --- // --- /// AFFX-r2-TagD // --- // unknown // --- // --- /// AFFX-r2-TagD // --- // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-TagD // --- // unknown // --- // --- /// AFFX-r2-TagD // --- // affx // --- // --- /// AFFX-r2-TagD // --- // affx // --- // --- /// AFFX-r2-TagD // --- // affx // --- // --- /// AFFX-r2-TagD // --- // affx // --- // --- /// AFFX-r2-TagD // --- // affx // --- // --- /// AFFX-r2-TagD // --- // affx // --- // --- /// AFFX-r2-TagD // --- // affx // --- // --- /// AFFX-r2-TagD // --- // affx // --- // --- /// AFFX-r2-TagD // --- // affx // --- // --- /// AFFX-r2-TagD // --- // affx // --- // --- /// AFFX-r2-TagD // --- // affx // --- // --- /// AFFX-r2-TagD // --- // affx // --- // --- --- AFFX_control No -1.86684112286222 -2.61636258893457 -2.78381518218887 -1.09195225987728 -26.9699490122907 Max fold change at or above threshold 3 26.9699490122907 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776738_at SPAC13F5.01c.S1 --- 26.9595927755563 --- --- --- --- 6.80041790008545 3.8956036567688 9.41991806030273 0.644369304180145 0.149657994508743 0.466064006090164 0.00585938012227416 0.567627012729645 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13F5.01c /GEN=msh1 /DEF=MutS family --- --- --- --- --- --- SPAC13F5.01c // |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.01514867640243 -1.7456647285638 -26.9595927755563 1.38519693917404 -10.5536031216414 Max fold change at or above threshold 3 26.9595927755563 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1772077_at SPAC9E9.04.S1 --- 26.9367627553133 --- --- --- --- 0.302722126245499 0.515386343002319 8.15435409545898 4.89748573303223 0.999267995357513 0.969726979732513 0.665526986122131 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9E9.04 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC9E9.04 // |||bap31homolog|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.67554613169616 1.70250635258936 5.119924266089 26.9367627553133 16.1781558347688 Max fold change at or above threshold 2 26.9367627553133 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778207_at SPAC4F8.08.S1 --- 26.8937475725652 --- --- --- --- 6.71301984786987 3.00160050392151 0.732649564743042 0.249612659215927 0.194580003619194 0.633789002895355 0.888427972793579 0.884033203125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F8.08 /DEF=hypothetical protein --- --- --- --- --- --- SPAC4F8.08 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.64483238352777 -2.23648011755712 -9.03574882389667 -9.1626613471398 -26.8937475725652 Max fold change at or above threshold 2 26.8937475725652 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780000_at SPAC2G11.04.S1 --- 26.8888114219222 --- --- --- --- 15.9717483520508 8.45513725280762 3.05568170547485 2.26857972145081 0.111571997404099 0.14453125 0.432372987270355 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2G11.04 /DEF=G-patch domain --- --- --- --- --- --- SPAC2G11.04 // |||G-patch domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -26.8888114219222 -1.88899930001103 -2.42762597820215 -5.22690184760875 -7.04041749162622 Max fold change at or above threshold 3 26.8888114219222 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1774589_at SPAC1002.10c.S1 --- 26.8214731227375 --- --- --- --- 0.226473316550255 4.37737703323364 6.07434797286987 1.46546173095703 0.943848013877869 0.432372987270355 0.00195312988944352 0.432372987270355 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1002.10c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC1002.10c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.19645742203751 19.3284449572773 2.50417613944972 26.8214731227375 6.47079202653811 Max fold change at or above threshold 2 26.8214731227375 Max fold change at or above threshold AAAAPA No 3 0 AAPA 3 1 0 No No x = 1
1779406_at SPCC63.10c.S1 --- 26.7386035441609 --- --- --- --- 6.24091005325317 6.39273309707642 0.975131511688232 0.233404487371445 0.303710997104645 0.398925989866257 0.696289002895355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC63.10c /DEF=dolichol kinase (predicted) --- --- --- --- --- --- SPCC63.10c // |||dolichol kinase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.71865619859277 1.02432706809227 1.090270754348 -6.40007012228368 -26.7386035441609 Max fold change at or above threshold 2 26.7386035441609 Max fold change at or above threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1771050_at SPCC285.11.S1 --- 26.689640410027 --- --- --- --- 8.76960945129395 1.5140153169632 5.15008878707886 6.96894502639771 0.194580003619194 0.466064006090164 0.24609400331974 0.108154296875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC285.11 /DEF=UBX domain --- --- --- --- --- --- SPCC285.11 // |||UBX domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -26.689640410027 -5.79228581972604 -1.53894360237171 -1.70280742990221 -1.25838407651022 Max fold change at or above threshold 3 26.689640410027 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780094_at SPBC12C2.01c.S1 --- 26.6515603595112 --- --- --- --- 7.11881065368652 0.43440318107605 2.42111039161682 1.38832879066467 0.0805663987994194 0.665771484375 0.601073980331421 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12C2.01c /DEF=hypothetical protein --- --- --- --- --- --- SPBC12C2.01c // ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -26.6515603595112 -16.3875656620485 -2.44784801635765 -2.94030816535076 -5.12761148623759 Max fold change at or above threshold 1 26.6515603595112 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769878_at SPBC30D10.16.S1 --- 26.6367657599401 --- --- --- --- 10.8018093109131 9.19660472869873 7.38380575180054 0.405522555112839 0.0805663987994194 0.274170011281967 0.2392578125 0.82275390625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30D10.16 /DEF=chorismate mutase (predicted) --- --- --- --- --- --- SPBC30D10.16 // |||phrenate dehydratase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.89317041318432 -1.17454317430923 -8.88825953535346 -1.46290540054891 -26.6367657599401 Max fold change at or above threshold 3 26.6367657599401 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778011_at SPAC13D6.02c.S1 --- 26.5586404957944 --- --- --- --- 10.3429288864136 2.47280335426331 1.21170926094055 0.389437437057495 0.466064006090164 0.696289002895355 0.665526986122131 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13D6.02c /GEN=byr3 /DEF=zinc finger protein --- --- --- --- --- --- SPAC13D6.02c // |byr3||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -14.570577376762 -4.18267342956388 -13.8059479836657 -8.53581731180729 -26.5586404957944 Max fold change at or above threshold 1 26.5586404957944 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775483_at SPBC1289.09.S1 --- 26.534641324478 --- --- --- --- 7.07326030731201 0.791094124317169 4.76924657821655 0.653760254383087 0.24609400331974 0.932372987270355 0.432372987270355 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1289.09 /DEF=sequence orphan --- --- --- --- --- --- SPBC1289.09 // |tim21||mitochondrial inner membrane presequence translocase complex subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -26.534641324478 -8.9411109119503 -5.01928270254925 -1.48309805150755 -10.8193489278216 Max fold change at or above threshold 2 26.534641324478 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774374_at SPBP35G2.08c.S1 --- 26.4876030861822 --- --- --- --- 12.9228591918945 7.67228698730469 6.08234786987305 2.52305388450623 0.274170011281967 0.567627012729645 0.559326171875 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP35G2.08c /DEF=zinc finger protein --- --- --- --- --- --- SPBP35G2.08c // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -26.4876030861822 -1.68435555308058 -25.9259445271535 -2.12464980109141 -5.12191169251369 Max fold change at or above threshold 4 26.4876030861822 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771878_at SPAC1687.18c.S1 --- 26.469497134292 --- --- --- --- 3.75506997108459 1.42591142654419 1.10296976566315 0.20100311934948 0.665526986122131 0.780517995357513 0.55908203125 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.18c /DEF=sequence orphan --- --- --- --- --- --- SPAC1687.18c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -26.469497134292 -2.63345247199913 -6.44554164822088 -3.40450852596753 -18.6816502312869 Max fold change at or above threshold 1 26.469497134292 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771056_at SPAC637.10c.S1 --- 26.3697328849207 --- --- --- --- 0.314754337072372 5.41645336151123 8.29998779296875 2.42768049240112 0.870360970497131 0.219482004642487 0.334473013877869 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC637.10c /GEN=pus1 /DEF=19S proteasome regulatory subunit --- --- --- --- --- --- SPAC637.10c // |pus1|rpn10|19S proteasome regulatory subunit|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.42810221331389 17.2085106495794 4.21562173131733 26.3697328849207 7.71293738152024 Max fold change at or above threshold 2 26.3697328849207 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779362_at SPCC622.15c.S1 --- 26.3036539024439 --- --- --- --- 12.0381879806519 0.45766219496727 9.61652278900146 5.02320051193237 0.149657994508743 0.696289002895355 0.334473013877869 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC622.15c /DEF=sequence orphan --- --- --- --- --- --- SPCC622.15c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -21.2038604837111 -26.3036539024439 -2.81457214638369 -1.25182337158501 -2.39651750951524 Max fold change at or above threshold 3 26.3036539024439 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771403_at YKR104W.S1 ORFs YKR103W and YKR104W are merged in different strain backgrounds 26.2068089285007 2.3140724003315 2.75949794054031 --- 6810 // transport // inferred from sequence similarity 16020 // membrane // inferred from sequence similarity 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from sequence similarity 4.29811906814575 4.46413707733154 0.164007723331451 1.22087681293488 0.0952147990465164 0.171387001872063 0.525390625 0.2958984375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR104W /GEN=NFT1 /DB_XREF=GI:6322957 /SEG=NC_001143:+656472,657392 /DEF=ORFs YKR103W and YKR104W are merged in different strain backgrounds /NOTE=Ykr104wp; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 9020838]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence ISS] [pmid 12796304]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 9020838] --- --- --- --- --- --- S0001812 // YKR104W SGDID:S0001812, Chr XI from 656474-657394, Verified ORF // sgd // 11 // --- /// GENSCAN00000018505 // cdna:Genscan chromosome:SGD1:XI:656474:657394:1 // ensembl // 11 // --- /// YKR104W // cdna:known chromosome:SGD1:XI:656474:657394:1 gene:YKR104W // ensembl // 11 // --- --- No cerevisiae_gene 1.16051205433796 1.03862573524689 -5.12306369565492 -26.2068089285007 -3.52051822313954 Max fold change at or above threshold 2 26.2068089285007 Max fold change at or above threshold 0.810185697211517 0.88655135206932 -1.09144004598427 -0.605297003296568 2.53678517043591 2.17398789409881 0.856985415806909 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770151_at SPAC17A2.11.S1 --- 26.2059491505224 --- --- --- --- 7.38556909561157 10.7847557067871 6.42888832092285 0.281827956438065 0.366210997104645 0.398925989866257 0.432372987270355 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A2.11 /DEF=dubious --- --- --- --- --- --- SPAC17A2.11 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -22.2357567235242 1.46024708010589 -5.76912008005206 -1.14880967391753 -26.2059491505224 Max fold change at or above threshold 3 26.2059491505224 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773747_at SPCC1919.04.S1 --- 26.1345909218669 --- --- --- --- 0.265607088804245 6.94153261184692 5.86511945724487 0.395038664340973 0.850341975688934 0.303710997104645 0.194580003619194 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1919.04 /DEF=sequence orphan --- --- --- --- --- --- SPCC1919.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.09621786531976 26.1345909218669 2.85470869175672 22.0819387149999 1.48730467292656 Max fold change at or above threshold 2 26.1345909218669 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773041_at SPCC18B5.05c.S1 --- 26.1260392164777 --- --- --- --- 0.242175877094269 6.32709646224976 2.39205598831177 0.322778731584549 0.941162109375 0.144775390625 0.129638999700546 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18B5.05c /DEF=pyrimidine kinase (predicted) --- --- --- --- --- --- SPCC18B5.05c // |||pyrimidine kinase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.55064770515257 26.1260392164777 11.5789336892576 9.87735036624082 1.33282775913682 Max fold change at or above threshold 1 26.1260392164777 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770198_at SPCC1919.10c.S1 --- 26.0091655311398 --- --- --- --- 4.89324903488159 3.95977020263672 1.0306658744812 0.18813556432724 0.601073980331421 0.5 0.753906011581421 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1919.10c /GEN=myo52 /DEF=myosin (type V) --- --- --- --- --- --- SPCC1919.10c // |myo52||myosin type V|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- D89250 // gb // 6 // Cross Hyb Matching Probes No No -11.4852056887481 -1.23574065778446 -5.59819128750748 -4.74765795204452 -26.0091655311398 Max fold change at or above threshold 2 26.0091655311398 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776114_at SPCC1442.04c.S1 --- 25.9622072196152 --- --- --- --- 5.89167737960815 0.226932838559151 1.53530979156494 2.88534116744995 0.149657994508743 0.533936023712158 0.5 0.212890625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1442.04c /DEF=hypothetical protein --- --- --- --- --- --- SPCC1442.04c // |||hypothetical protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.43171043049475 -25.9622072196152 -1.43041134443056 -3.83745183674154 -2.04193439793991 Max fold change at or above threshold 2 25.9622072196152 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1770586_at SPBC23G7.14.S1 --- 25.9611898990651 --- --- --- --- 3.34739136695862 0.128938287496567 4.28363132476807 1.81443321704865 0.466064006090164 0.805419981479645 0.5 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23G7.14 /DEF=sequence orphan --- --- --- --- --- --- SPBC23G7.14 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.56235355656209 -25.9611898990651 -3.49478994790726 1.27969240975252 -1.84486887448163 Max fold change at or above threshold 2 25.9611898990651 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778264_at SPBC16A3.19.S1 --- 25.8991303355441 --- --- --- --- 8.9816370010376 3.62089323997498 1.15524232387543 4.06436681747437 0.0461426004767418 0.274170011281967 0.533936023712158 0.111571997404099 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16A3.19 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC16A3.19 // |||histone acetyltransferase complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -25.8991303355441 -2.48050312610147 -2.77058885091403 -7.77467793155933 -2.20984901323913 Max fold change at or above threshold 3 25.8991303355441 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1772662_at SPBC365.14c.S1 --- 25.8961623286617 --- --- --- --- 0.329028576612473 3.42003464698792 2.64203667640686 0.218459442257881 0.962401986122131 0.71875 0.696289002895355 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC365.14c /DEF=UDP-glucose 4-epimerase (predicted) --- --- --- --- --- --- SPBC365.14c // |||UDP-glucose 4-epimerase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.95711917909975 10.3943392461501 25.8961623286617 8.02980915398917 -1.50613117570844 Max fold change at or above threshold 2 25.8961623286617 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777432_at SPBC20F10.01.S1 --- 25.8937365485729 --- --- --- --- 9.6017599105835 2.37611031532288 1.81606769561768 3.52585029602051 0.432372987270355 0.780517995357513 0.805419981479645 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC20F10.01 /GEN=gar1 /DEF=ribonucleoprotein (RNP) complex (PMID 8502556) --- --- --- --- --- --- AB000537 // Schizosaccharomyces pombe mRNA for snoRNP protein GAR 1, complete cds. // gb // 11 // --- /// SPBC20F10.01 // |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -25.8937365485729 -4.04095712588107 -10.1808921106978 -5.28711563657751 -2.72324662264323 Max fold change at or above threshold 2 25.8937365485729 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771607_at SPAC17H9.03c.S1 --- 25.799209465795 --- --- --- --- 3.28205060958862 6.86788415908813 4.09580421447754 0.127215161919594 0.24609400331974 0.0239257998764515 0.149657994508743 0.5 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17H9.03c /DEF=sequence orphan --- --- --- --- --- --- SPAC17H9.03c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.20176763040025 2.09255888346858 1.59607023665258 1.24794060229038 -25.799209465795 Max fold change at or above threshold 3 25.799209465795 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1773248_at SPAPB1E7.04c.S1 --- 25.7540447954306 --- --- --- --- 0.266731381416321 5.80839395523071 6.86941194534302 2.76462030410767 0.805419981479645 0.24609400331974 0.219482004642487 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1E7.04c /DEF=glycosyl hydrolase family 18 --- --- --- --- --- --- SPAPB1E7.04c // |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 24.314398403579 21.776192678899 7.4034851318768 25.7540447954306 10.3648108048921 Max fold change at or above threshold 3 25.7540447954306 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779204_at SPAC1610.01.S1 --- 25.7272004766021 --- --- --- --- 0.177162334322929 4.55789089202881 2.15967869758606 0.517373502254486 0.919434010982513 0.194580003619194 0.334473013877869 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1610.01 /DEF=sequence orphan --- --- --- --- --- --- SPAC1610.01 // ||SPAC17A5.17|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 15.2735380951544 25.7272004766021 17.0280568951742 12.1903942270789 2.92033577132385 Max fold change at or above threshold 1 25.7272004766021 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770805_at SPAC24C9.07c.S1 --- 25.714968014526 --- --- --- --- 6.71293878555298 0.369804173707962 0.337158441543579 0.261051803827286 0.366210997104645 0.953857004642487 0.969726979732513 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24C9.07c /GEN=bgs2 /DEF=1,3-beta-glucan synthase (subunit) (PMID 10922478) --- --- --- --- --- --- AB054305 // Schizosaccharomyces pombe mRNA for Meu21, partial cds. // gb // 10 // --- /// SPAC24C9.07c // |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit Bgs2|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -21.7996897798757 -18.1526852935258 -25.6903670496461 -19.9103387559267 -25.714968014526 Max fold change at or above threshold 1 25.714968014526 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772244_at SPAC20H4.02.S1 --- 25.7142404609775 --- --- --- --- 0.156174391508102 0.287857681512833 0.185734689235687 2.35312843322754 0.665526986122131 0.725830018520355 0.995850026607513 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20H4.02 /DEF=GTP binding (predicted) --- --- --- --- --- --- SPAC20H4.02 // |||GTP binding |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 25.7142404609775 1.84318106658286 1.70645299363038 1.18927749576698 15.0673129602394 Max fold change at or above threshold 0 25.7142404609775 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773854_at SPBC13E7.05.S1 --- 25.7028842475591 --- --- --- --- 7.91759824752808 5.07737493515015 3.00344085693359 0.30804318189621 0.24609400331974 0.398925989866257 0.5 0.932861328125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13E7.05 /DEF=mannosyltransferase (predicted) --- --- --- --- --- --- SPBC13E7.05 // |||pig-M|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -16.0651802296651 -1.55938813829078 -11.6549410590231 -2.63617584786126 -25.7028842475591 Max fold change at or above threshold 3 25.7028842475591 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-E00696-1_s_at AFFX-Sc-E00696-1 --- 25.6973404037989 --- --- --- --- 6.86026525497437 3.9205276966095 3.79038429260254 0.600165903568268 0.366210997104645 0.533936023712158 0.567627012729645 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL E00696 /FEA=CDS /GEN=Lac Z --- --- --- --- --- --- AFFX-Sc-E00696-1 // --- // affx // --- // --- --- No No -25.6973404037989 -1.74983211084242 -1.4336480040561 -1.80991285457866 -11.4306147919881 Max fold change at or above threshold 3 25.6973404037989 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774559_at SPBC25B2.04c.S1 --- 25.6956606494421 --- --- --- --- 0.290780961513519 7.47180891036987 1.29463326931 1.99910593032837 0.850341975688934 0.24609400331974 0.665526986122131 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25B2.04c /DEF=NTP binding (predicted) --- --- --- --- --- --- SPBC25B2.04c // |||mitochondrial ribosome assembly protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.52389230695122 25.6956606494421 1.36070488952023 4.45226283925678 6.87495467352124 Max fold change at or above threshold 1 25.6956606494421 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774981_at SPBC2A9.09.S1 --- 25.6661665701068 --- --- --- --- 12.7577877044678 4.16984701156616 0.796245813369751 2.6924786567688 0.0952147990465164 0.601073980331421 0.850341975688934 0.2958984375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2A9.09 /DEF=conserved phosducin-like protein --- --- --- --- --- --- SPBC2A9.09 // |||conserved phosducin-like protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -25.6661665701068 -3.0595337596513 -2.4102816022996 -16.0224235911222 -4.73830597408642 Max fold change at or above threshold 3 25.6661665701068 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773735_at SPBC1734.10c.S1 --- 25.6232728539969 --- --- --- --- 0.509003758430481 13.0423421859741 5.25325345993042 5.13370752334595 0.828612983226776 0.149657994508743 0.5 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1734.10c /DEF=hypothetical protein --- --- --- --- --- --- SPBC1734.10c // |||mRNA processing protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 8.69433628903051 25.6232728539969 11.6505277841077 10.3206575058088 10.0857949245322 Max fold change at or above threshold 3 25.6232728539969 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771603_s_at SPCC794.02.S1 --- 25.6127309799194 --- --- --- --- 2.56127309799194 0.0200410913676023 1.2310163974762 0.336777299642563 0.432372987270355 0.9755859375 0.601073980331421 0.665771484375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC794.02 /GEN=wtf5 /DEF=wtf element --- --- --- --- --- --- SPCC794.02 // |wtf5||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPCC553.05c // |wtf6|SPCC553.05|wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.22837929978173 -25.6127309799194 -1.07527473022438 -2.08061655656497 -7.60524269512921 Max fold change at or above threshold 1 25.6127309799194 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774247_at SPCC645.07.S1 --- 25.5970366276304 --- --- --- --- 0.463292956352234 1.11918103694916 11.8589267730713 8.30152130126953 0.601073980331421 0.567627012729645 0.00805663969367743 0.0375977009534836 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC645.07 /GEN=rgf1 /DEF=localization cell division site (pers. comm. Jian-Qiu Wu and John R. Pringle) --- --- --- --- --- --- SPCC645.07 // |rgf1||RhoGEF|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.87471152482913 2.41570915681753 -1.72016501068413 25.5970366276304 17.9185139498603 Max fold change at or above threshold 2 25.5970366276304 Max fold change at or above threshold AAAAPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1777167_at SPBC1718.07c.S1 --- 25.5892057519425 --- --- --- --- 0.233332961797714 5.29526472091675 0.476143509149551 2.31151127815247 0.850341975688934 0.219482004642487 0.696289002895355 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1718.07c /GEN=zfs1 /DEF=zinc finger protein --- --- --- --- --- --- SPBC1718.07c // |zfs1||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 25.5892057519425 22.6940277966704 1.94137026613303 2.0406182884797 9.90649268043153 Max fold change at or above threshold 1 25.5892057519425 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778523_at SPAC13D6.01.S1 --- 25.5883132666152 --- --- --- --- 6.00450325012207 8.08902168273926 0.710824310779572 0.733488440513611 0.567627012729645 0.466064006090164 0.932372987270355 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13D6.01 /DEF=hypothetical protein --- --- --- --- --- --- SPAC13D6.01 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -25.5883132666152 1.34715918133191 -5.66480566806446 -8.44723957673429 -8.18622751016708 Max fold change at or above threshold 2 25.5883132666152 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772285_at SPBC725.14.S1 --- 25.5870547650732 --- --- --- --- 7.59483766555786 2.84050750732422 2.42020916938782 0.575552642345428 0.633789002895355 0.533936023712158 0.601073980331421 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC725.14 /DEF=acetylglutamate synthase (predicted) --- --- --- --- --- --- SPBC725.14 // |||acetylglutamate synthase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -25.5870547650732 -2.67376081421177 -4.98333476082813 -3.13809143507995 -13.1957306886964 Max fold change at or above threshold 2 25.5870547650732 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774067_at SPBC1198.13c.S1 --- 25.5442265536261 --- --- --- --- 5.94386911392212 2.51333117485046 6.63618278503418 2.57205128669739 0.334473013877869 0.398925989866257 0.303710997104645 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1198.13c /DEF=transcription factor TFIIF complex (beta subunit) (predicted) --- --- --- --- --- --- SPBC1198.13c // |tfg2|SPBC660.03c|transcription factor TFIIF complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -25.5442265536261 -2.36493669174965 -2.4510711788473 1.11647525506416 -2.31094502067814 Max fold change at or above threshold 4 25.5442265536261 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780208_at SPCC569.05c.S1 --- 25.5341364376271 --- --- --- --- 7.03804016113281 1.53985548019409 3.78289866447449 0.529565632343292 0.303710997104645 0.850341975688934 0.194580003619194 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC569.05c /DEF=unknown specificity --- --- --- --- --- --- SPCC569.05c // |||membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.85777239261262 -4.57058487089042 -25.5341364376271 -1.86048868483516 -13.2902132073601 Max fold change at or above threshold 2 25.5341364376271 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772914_at SPAC15E1.04.S1 --- 25.4282791539201 --- --- --- --- 0.344065248966217 3.32691502571106 8.74898719787598 0.861855745315552 0.533936023712158 0.398925989866257 0.171387001872063 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15E1.04 /DEF=thymidylate synthase (predicted) --- --- --- --- --- --- SPAC15E1.04 // |||thymidylate synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 11.2132397001831 9.66943053885027 8.11560207377898 25.4282791539201 2.50491948229324 Max fold change at or above threshold 2 25.4282791539201 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770194_at SPAC2F7.09c.S1 --- 25.403257755783 --- --- --- --- 4.79350137710571 1.05506598949432 4.35543346405029 1.73844301700592 0.334473013877869 0.633789002895355 0.303710997104645 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F7.09c /DEF=NTP binding (predicted) --- --- --- --- --- --- SPAC2F7.09c // |||NTP binding |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -22.2676692270605 -4.54331901969768 -25.403257755783 -1.10057963614213 -2.75735317765057 Max fold change at or above threshold 2 25.403257755783 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777190_at SPAC57A7.11.S1 --- 25.3948356140445 --- --- --- --- 0.364964604377747 4.9791579246521 9.26821613311768 3.59130620956421 0.725830018520355 0.334473013877869 0.366210997104645 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC57A7.11 /GEN=mip1 /DEF=WD repeat protein --- --- --- --- --- --- SPAC57A7.11 // |mip1||WD-repeat protein Mip1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.85611219325472 13.6428515667743 1.22155913109231 25.3948356140445 9.84014933636448 Max fold change at or above threshold 3 25.3948356140445 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774133_at SPCC1620.10.S1 --- 25.3928109027639 --- --- --- --- 8.39049053192139 0.330427795648575 1.62443912029266 1.12148010730743 0.466064006090164 0.870360970497131 0.533936023712158 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1620.10 /GEN=cwf26 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC1620.10 // |cwf26||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -7.12600151683538 -25.3928109027639 -19.3773029540223 -5.16516157922233 -7.48162225727405 Max fold change at or above threshold 1 25.3928109027639 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778213_at SPAC25G10.07c.S1 --- 25.3700069874545 --- --- --- --- 0.275313407182693 2.77256178855896 3.08689641952515 0.915479421615601 0.932372987270355 0.696289002895355 0.5 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25G10.07c /GEN=cut7 /DEF=kinesin-like protein --- --- --- --- --- --- SPAC25G10.07c // |cut7||kinesin-like protein Cut7|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 25.3700069874545 10.0705658214427 12.5548573633752 11.2122996519263 3.32522644277946 Max fold change at or above threshold 2 25.3700069874545 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769944_at SPAC186.02c.S1 --- 25.2754218107293 --- --- --- --- 0.401803582906723 10.1557550430298 4.97108793258667 4.44378232955933 0.904784977436066 0.0805663987994194 0.030273400247097 0.171387001872063 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC186.02c /DEF=2-hydroxyacid dehydrogenase (predicted) --- --- --- --- --- --- SPAC186.02c // |||2-hydroxyacid dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.84630067693985 25.2754218107293 12.8635170387585 12.3719353038738 11.0595886114608 Max fold change at or above threshold 3 25.2754218107293 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1778050_at SPCC1259.11c.S1 --- 25.2412704111644 --- --- --- --- 4.6639232635498 0.8834108710289 0.184773713350296 1.53124344348907 0.753906011581421 0.725830018520355 0.805419981479645 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1259.11c /GEN=gyp2 /DEF=TBC domain protein --- --- --- --- --- --- SPCC1259.11c // |gyp2||GTPase activating protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -22.633588430461 -5.27944970624799 -9.36583749681761 -25.2412704111644 -3.04584047910934 Max fold change at or above threshold 1 25.2412704111644 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778361_at SPBC660.15.S1 --- 25.2342296345967 --- --- --- --- 10.7453079223633 8.56737995147705 6.12830877304077 2.4915566444397 0.129638999700546 0.5 0.24609400331974 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC660.15 /DEF=RNA-binding protein --- --- --- --- --- --- SPBC660.15 // |||mRNA cleavage factor complex|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -25.2342296345967 -1.25421167068828 -7.95936561848277 -1.75338879294615 -4.31268859423411 Max fold change at or above threshold 3 25.2342296345967 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775096_at SPCC830.10.S1 --- 25.1933145901754 5.54092526435852 2.19078224897385 --- --- --- --- 0.264794230461121 6.67104434967041 4.41080617904663 4.11677026748657 0.633789002895355 0.171387001872063 0.129638999700546 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC830.10 /DEF=similar to S. cerevisiae YJR069C --- --- --- --- --- --- SPCC830.10 // |||DNA repair protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No cerevisiae_gene 9.07471046773108 25.1933145901754 10.1929278718562 16.6574859707688 15.5470542553646 Max fold change at or above threshold 3 25.1933145901754 Max fold change at or above threshold -1.35474404204083 1.05533252505447 0.205014952416975 0.0943965645693792 3.86585375666618 2.65811062049797 0.687586956933998 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770309_at SPAC22H10.07.S1 --- 25.1872885173741 --- --- --- --- 0.429535716772079 8.57744789123535 10.8188400268555 2.27310562133789 0.725830018520355 0.171387001872063 0.0107421996071935 0.171387001872063 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22H10.07 /GEN=scd2 /DEF=involved in conjugation (regulation) --- --- --- --- --- --- SPAC22H10.07 // |scd2|ral3|Ras1p-Scd1p-Scd2p-Cdc42p-Shk1p complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 16.977338311214 19.9691144561716 1.60926666225856 25.1872885173741 5.2920060720912 Max fold change at or above threshold 2 25.1872885173741 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1771592_at SPBC1773.02c.S1 --- 25.1774006227392 --- --- --- --- 5.05327463150024 3.02428793907166 3.10610294342041 5.04257249832153 0.0952147990465164 0.303710997104645 0.219482004642487 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1773.02c /DEF=thioredoxin peroxidase --- --- --- --- --- --- SPBC1773.02c // |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -2.97849452241505 -1.67089732634764 -25.1774006227392 -1.62688575477013 -1.00212235583767 Max fold change at or above threshold 4 25.1774006227392 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777649_at SPBC365.10.S1 --- 25.1072716913069 --- --- --- --- 0.252737045288086 4.31570529937744 6.3455376625061 2.7676112651825 0.780517995357513 0.601073980331421 0.432372987270355 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC365.10 /DEF=actin-like protein --- --- --- --- --- --- SPBC365.10 // |||actin-like protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.03320198269271 17.0758714633944 20.6133543888247 25.1072716913069 10.9505563857004 Max fold change at or above threshold 3 25.1072716913069 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771238_at SPBC16G5.04.S1 --- 25.0788106644476 --- --- --- --- 6.07068729400635 4.35235643386841 1.41059231758118 0.405162781476974 0.24609400331974 0.366210997104645 0.398925989866257 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16G5.04 /GEN=mrpl23 /DEF=mitochondrial ribosomal protein subunit YmL23 --- --- --- --- --- --- SPBC16G5.04 // |mrpl23||mitochondrial ribosomal protein subunit L13|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -25.0788106644476 -1.39480471929333 -1.03001622391445 -4.3036440921613 -14.9833291001616 Max fold change at or above threshold 2 25.0788106644476 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775496_at SPAC1834.07.S1 --- 25.0642637765461 --- --- --- --- 4.49443769454956 11.2024955749512 1.64558124542236 1.45151281356812 0.366210997104645 0.303710997104645 0.725830018520355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1834.07 /GEN=klp3 /DEF=kinesin-like protein --- --- --- --- --- --- AF154055 // Schizosaccharomyces pombe kinesin-like protein Klp3 mRNA, complete cds. // gb // 10 // --- /// AF156966 // Schizosaccharomyces pombe kinesin-related protein 1 (krp1) mRNA, complete cds. // gb // 10 // --- /// SPAC1834.07 // |klp3|krp1|kinesin-like protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -25.0642637765461 2.4925243904341 -5.95313874589116 -2.73121591963452 -3.09638168711809 Max fold change at or above threshold 2 25.0642637765461 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Bs-lys-5_at AFFX-r2-Bs-lys-5 --- 25.0169438635199 --- --- --- --- 0.180503025650978 4.51563405990601 0.183749794960022 1.32389640808105 0.904784977436066 0.111571997404099 0.466064006090164 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 411-659 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). --- --- --- --- --- --- AFFX-r2-Bs-lys-5 // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 411-659 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // --- // --- /// X17013 // Bacillus subtilis /REF=X17013 /DEF=B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 1008-1263 of X17013 /LEN=1108 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-r2-Bs-lys-5 // --- // unknown // --- // --- /// AFFX-r2-Bs-lys-5 // --- // unknown // --- // --- /// AFFX-r2-Bs-lys-5 // --- // unknown // --- // --- /// AFFX-r2-Bs-lys-5 // --- // unknown // --- // --- /// AFFX-r2-Bs-lys-5 // --- // gb // --- // --- /// AFFX-r2-Bs-lys-5 // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 411-659 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-lys-5 // --- // unknown // --- // --- /// AFFX-r2-Bs-lys-5 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-5 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-lys-5 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-5 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-5 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-5 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-5 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-5 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-5 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-5 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-5 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-5 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-5 // --- // affx // --- // --- 50812173 // gb // 11 // Negative Strand Matching Probes AFFX_control No 2.16706456090234 25.0169438635199 -1.01792865244897 1.0179873400866 7.33448319387704 Max fold change at or above threshold 1 25.0169438635199 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771241_at SPAC3A11.07.S1 --- 25.0120710416278 --- --- --- --- 0.352387607097626 6.9554500579834 8.81394386291504 3.51599431037903 0.567627012729645 0.303710997104645 0.0805663987994194 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A11.07 /DEF=NADH dehydrogenase (predicted) --- --- --- --- --- --- SPAC3A11.07 // |||NADH dehydrogenase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.20999908154199 19.7380666002152 10.1681968943941 25.0120710416278 9.97763326394437 Max fold change at or above threshold 3 25.0120710416278 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774920_at SPBC1198.07c.S1 --- 24.8557421845972 --- --- --- --- 4.02718877792358 0.367356896400452 0.259263515472412 0.162022471427917 0.432372987270355 0.828612983226776 0.633789002895355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1198.07c /DEF=glycosylhydrolase (predicted) --- --- --- --- --- --- SPBC1198.07c // |||glycosylhydrolase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.05159881337932 -10.9626056224451 -1.87357782540682 -15.5331874235583 -24.8557421845972 Max fold change at or above threshold 1 24.8557421845972 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779913_at SPBC582.04c.S1 --- 24.8363562946759 --- --- --- --- 0.328731805086136 3.36612367630005 8.16450023651123 0.157352417707443 0.932372987270355 0.466064006090164 0.274170011281967 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC582.04c /DEF=sequence orphan --- --- --- --- --- --- SPBC582.04c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.0014940515805 10.2397261969162 20.1725640454493 24.8363562946759 -2.0891436552143 Max fold change at or above threshold 2 24.8363562946759 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771584_at SPAC823.13c.S1 --- 24.819349394402 --- --- --- --- 0.372764021158218 9.25176048278809 2.61175632476807 0.267208725214005 0.780517995357513 0.525634765625 0.303710997104645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC823.13c /DEF=localization mitochondrial inner membrane (predicted) --- --- --- --- --- --- SPAC823.13c // |||mitochondrial inner membrane protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.59072920801558 24.819349394402 7.63506476114867 7.0064603248271 -1.39502937585468 Max fold change at or above threshold 2 24.819349394402 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771437_at SPAC1002.05c.S1 --- 24.7388304485407 --- --- --- --- 11.2608366012573 1.82965278625488 0.564554154872894 0.455188721418381 0.0952147990465164 0.753906011581421 0.870360970497131 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1002.05c /GEN=jmj2 /DEF=transcription factor (predicted) --- --- --- --- --- --- SPAC1002.05c // |jmj2||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -14.2391245740238 -6.1546303680422 -14.5637371628611 -19.9464241013205 -24.7388304485407 Max fold change at or above threshold 1 24.7388304485407 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-U55943-1_at AFFX-Sc-U55943-1 --- 24.7070582426002 --- --- --- --- 0.30285769701004 1.55896234512329 1.85686910152435 7.48272275924683 0.5 0.696289002895355 0.5 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL U55943 /FEA=CDS_1 /DB_XREF=AAB01203.1 GI:1335994 /PROD=VP16 transactivation domain (modified) --- --- --- --- --- --- AFFX-Sc-U55943-1 // --- // affx // --- // --- --- No No 3.70806333814134 5.14750775864088 2.72938269972166 6.13116034314556 24.7070582426002 Max fold change at or above threshold 1 24.7070582426002 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779683_at SPBC16G5.03.S1 --- 24.693463413314 --- --- --- --- 4.35096549987793 0.230120196938515 6.68467473983765 2.24647068977356 0.334473013877869 0.828612983226776 0.0676269978284836 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16G5.03 /DEF=zinc finger protein --- --- --- --- --- --- SPBC16G5.03 // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.49215585302472 -18.90736040453 -24.693463413314 1.53636583420972 -1.93680047537878 Max fold change at or above threshold 2 24.693463413314 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773569_at SPBC36B7.06c.S1 --- 24.6680436214433 --- --- --- --- 2.9771511554718 0.797564446926117 6.75788164138794 5.66573572158813 0.466064006090164 0.780517995357513 0.398925989866257 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC36B7.06c /DEF=sequence orphan --- --- --- --- --- --- SPBC36B7.06c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.99696395666551 -3.73280324486128 -24.6680436214433 2.26991552947099 1.90307291290027 Max fold change at or above threshold 3 24.6680436214433 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774854_at SPBC646.06c.S1 --- 24.6570769306299 --- --- --- --- 0.366047233343124 9.02565479278564 5.47026777267456 6.07364988327026 0.725830018520355 0.14453125 0.219482004642487 0.030273400247097 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC646.06c /GEN=agn2 /DEF=glycosyl hydrolase family 71 --- --- --- --- --- --- AY626902 // Schizosaccharomyces pombe putative (1,3)-alpha-glucanase (agn2) mRNA, complete cds. // gb // 11 // --- /// SPBC646.06c // |agn2||endo-1,3-alpha-glucanase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 8.46978226839195 24.6570769306299 6.2639895910501 14.9441582243755 16.5925304988631 Max fold change at or above threshold 3 24.6570769306299 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1771043_at SPAC22H12.01c.S1 --- 24.6301442119581 --- --- --- --- 0.306118041276932 7.53973150253296 4.67971277236938 0.164457842707634 0.962401986122131 0.303710997104645 0.432372987270355 0.968505859375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22H12.01c /DEF=hypothetical protein --- --- --- --- --- --- SPAC22H12.01c // ||SPAC23G3.13c|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.014185595121 24.6301442119581 5.04799546166879 15.2872818369299 -1.86137697197655 Max fold change at or above threshold 2 24.6301442119581 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774260_at SPAC2C4.09.S1 --- 24.6289480453244 --- --- --- --- 5.64432525634766 0.669466257095337 0.540722489356995 0.299224257469177 0.219482004642487 0.850341975688934 0.850341975688934 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2C4.09 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC2C4.09 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.79313504546624 -8.43108251764191 -24.6289480453244 -10.4384880737246 -18.8631941276655 Max fold change at or above threshold 1 24.6289480453244 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771604_at SPBC1861.02.S1 --- 24.6002010462944 --- --- --- --- 6.14896154403687 5.6677942276001 0.51872980594635 3.06053495407104 0.334473013877869 0.303710997104645 0.962401986122131 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1861.02 /GEN=abp2 /DEF=ARS binding protein (PMID 9488484) --- --- --- --- --- --- U73044 // Schizosaccharomyces pombe ARS binding protein 2 (abp2) mRNA, complete cds. // gb // 11 // --- /// SPBC1861.02 // |abp2||ARS binding protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.34587694805575 -1.08489498685285 -24.6002010462944 -11.8538812953286 -2.00911332048591 Max fold change at or above threshold 3 24.6002010462944 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771239_at SPBC3B8.07c.S1 --- 24.5753605093032 --- --- --- --- 0.526549220085144 12.9401369094849 4.28805017471313 0.941347539424896 0.805419981479645 0.149657994508743 0.274170011281967 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B8.07c /GEN=dsd1 /DEF=dihydrosphingosine delta 4 desaturase (pers. comm. Jonathan Napier) --- --- --- --- --- --- SPBC3B8.07c // |dsd1||dihydrosphingosine delta-4 desaturase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.00551666409996 24.5753605093032 18.134275749573 8.14368346043652 1.78776741758858 Max fold change at or above threshold 2 24.5753605093032 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775309_at SPAC144.15c.S1 --- 24.5671787813131 --- --- --- --- 4.9878363609314 4.14560270309448 1.56753134727478 0.403334975242615 0.24609400331974 0.633789002895355 0.334473013877869 0.49169921875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC144.15c /DEF=sequence orphan --- --- --- --- --- --- SPAC144.15c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.25477686397819 -1.20316313891059 -24.5671787813131 -3.18196913229388 -12.3664860899581 Max fold change at or above threshold 2 24.5671787813131 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775561_at SPBC16G5.12c.S1 --- 24.4603132417395 --- --- --- --- 0.42835795879364 10.4777698516846 3.4182460308075 0.960377156734467 0.82275390625 0.0676269978284836 0.398925989866257 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16G5.12c /GEN=top3 /DEF=DNA topoisomerase III --- --- --- --- --- --- AF126287 // Schizosaccharomyces pombe topoisomerase 3 (top3) mRNA, complete cds. // gb // 11 // --- /// SPBC16G5.12c // |top3||DNA topoisomerase III|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.62797663139629 24.4603132417395 -1.41076358236953 7.97988215378116 2.24199676233196 Max fold change at or above threshold 2 24.4603132417395 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774711_at SPBC17A3.09c.S1 --- 24.4538787088178 --- --- --- --- 10.2788858413696 11.3152923583984 7.51611042022705 2.05804800987244 0.212890625 0.129638999700546 0.0805663987994194 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17A3.09c /DEF=lipoate-protein ligase A (predicted) --- --- --- --- --- --- SPBC17A3.09c // |||lipoate-protein ligase A |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -24.4538787088178 1.10082868250736 -1.43826765644434 -1.36758047270135 -4.99448302083426 Max fold change at or above threshold 3 24.4538787088178 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772660_at SPBC31F10.09c.S1 --- 24.4364570471371 --- --- --- --- 7.84738159179688 0.761446118354797 0.782908916473389 0.321134179830551 0.274170011281967 0.466064006090164 0.274170011281967 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31F10.09c /GEN=nut2 /DEF=RNA polymerase II holoenzyme component (PMID 11572939) --- --- --- --- --- --- SPBC31F10.09c // |nut2|med10|mediator complex subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -21.2997413917926 -10.3058921736342 -3.3425004645986 -10.0233646937442 -24.4364570471371 Max fold change at or above threshold 1 24.4364570471371 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774301_at SPAC5H10.08c.S1 --- 24.4332173798624 --- --- --- --- 0.286285638809204 6.99487924575806 4.14403581619263 1.57352769374847 0.904784977436066 0.0676269978284836 0.466064006090164 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5H10.08c /GEN=pan6 /DEF=pantoate--beta-alanine ligase (pers. comm. J. Stolz) --- --- --- --- --- --- SPAC5H10.08c // |pan6||pantoate-beta-alanine ligase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.88603158120316 24.4332173798624 10.5121842752436 14.4751788229043 5.49635566874228 Max fold change at or above threshold 2 24.4332173798624 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778163_at SPCC613.07.S1 --- 24.3841755985781 --- --- --- --- 5.330979347229 5.58325815200806 6.18307495117188 0.258630394935608 0.111571997404099 0.466064006090164 0.5 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC613.07 /DEF=zinc finger protein --- --- --- --- --- --- SPCC613.07 // |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.19972863077334 1.04732316303386 -24.3841755985781 1.15983847402931 -20.6123466213485 Max fold change at or above threshold 3 24.3841755985781 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770382_at SPAC2E1P5.02c.S1 --- 24.3680639014807 --- --- --- --- 0.407898992300034 9.9397087097168 5.88976621627808 2.51118159294128 0.79931640625 0.0952147990465164 0.219482004642487 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2E1P5.02c /DEF=hypothetical protein --- --- --- --- --- --- SPAC2E1P5.02c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 13.4333893068945 24.3680639014807 11.3267984328572 14.4392762116603 6.15638096770331 Max fold change at or above threshold 3 24.3680639014807 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777184_at YFR012W.S1 Hypothetical protein 24.2616561007781 48.3388767242432 5.59331059455872 --- --- --- --- 2.58225584030151 62.6498031616211 34.0279502868652 8.60436534881592 0.567627012729645 0.00195312988944352 0.000244141003349796 0.014160200022161 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR012W /GEN=UBP6 /DB_XREF=GI:14318534 /SEG=NC_001138:+167881,168489 /DEF=Hypothetical ORF /NOTE=Yfr012wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001908 // span:15-37,96-118,133-155,168-190 // numtm:4 S0001908 // YFR012W SGDID:S0001908, Chr VI from 167881-168489, Uncharacterized ORF // sgd // 11 // --- /// YFR012W // cdna:known chromosome:SGD1:VI:167881:168489:1 gene:YFR012W // ensembl // 11 // --- --- No cerevisiae_gene 1.90030326571546 24.2616561007781 5.18057614761504 13.1776060899109 3.33211187463564 Max fold change at or above threshold 4 24.2616561007781 Max fold change at or above threshold -0.889399680917827 1.30156212818886 0.257580987773571 -0.669743435044603 26.9660936594009 27.4160631516488 1.01668649148561 AAPPPP Called_P_>2EXP 2 0 APPP 1 3 0 Yes Yes 2 < x = 3
1777288_at SPAC6F6.13c.S1 --- 24.2484815946505 --- --- --- --- 4.80735206604004 0.505694687366486 0.849966526031494 1.29359686374664 0.366210997104645 0.828612983226776 0.696289002895355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F6.13c /DEF=conserved protein --- --- --- --- --- --- SPAC6F6.13c // |||conserved protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -24.2484815946505 -9.50643181773446 -1.72871850093966 -5.6559310499975 -3.71626756431406 Max fold change at or above threshold 1 24.2484815946505 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774144_at SPBC16G5.19.S1 --- 24.1671504268866 --- --- --- --- 4.25483083724976 5.69451332092285 0.856400728225708 3.93513941764832 0.171387001872063 0.303710997104645 0.696289002895355 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16G5.19 /DEF=dubious --- --- --- --- --- --- SPBC16G5.19 // |||dubious|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.64322389497763 1.33836421205495 -24.1671504268866 -4.96827092389905 -1.08124017618478 Max fold change at or above threshold 3 24.1671504268866 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774410_at SPBC26H8.14c.S1 --- 24.1579857556918 --- --- --- --- 4.2764253616333 0.784679532051086 5.81811428070068 2.3922016620636 0.303710997104645 0.780517995357513 0.432372987270355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC26H8.14c /GEN=cox17 /DEF=metallochaperone --- --- --- --- --- --- SPBC26H8.14c // |cox17||metallochaperone|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -24.1579857556918 -5.449900484157 -1.72486202115863 1.36050878682437 -1.7876525334174 Max fold change at or above threshold 2 24.1579857556918 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777685_at SPBC1703.05.S1 --- 24.1321689696228 --- --- --- --- 3.38183569908142 0.982011675834656 0.764150500297546 0.462732136249542 0.398925989866257 0.919434010982513 0.904784977436066 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1703.05 /DEF=RIO1 domain --- --- --- --- --- --- SPBC1703.05 // |||RIO1 domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -24.1321689696228 -3.44378359473888 -4.83259630669291 -4.42561471564122 -7.30840897822939 Max fold change at or above threshold 1 24.1321689696228 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771445_at SPAC26A3.17c.S1 --- 24.1256638095487 --- --- --- --- 11.6093997955322 1.44673871994019 2.46417236328125 1.5368800163269 0.533936023712158 0.665526986122131 0.753906011581421 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26A3.17c /DEF=N-methyltransferase (predicted) --- --- --- --- --- --- SPAC26A3.17c // ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -24.1256638095487 -8.02453106115264 -1.88731947378845 -4.71127749362198 -7.55387517060592 Max fold change at or above threshold 1 24.1256638095487 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774714_at SPBC83.09c.S1 --- 24.1232305125571 --- --- --- --- 5.49372577667236 5.07030963897705 0.756324172019959 0.227735906839371 0.0561522990465164 0.334473013877869 0.601073980331421 0.753906011581421 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC83.09c /DEF=GYF domain --- --- --- --- --- --- SPBC83.09c // |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.36198304315343 -1.08350893098133 -16.3206712323043 -7.26371836298707 -24.1232305125571 Max fold change at or above threshold 2 24.1232305125571 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1774535_at SPCC777.02.S1 --- 24.1082833325697 --- --- --- --- 0.246516078710556 5.94307947158813 1.42231667041779 3.71495294570923 0.932372987270355 0.432372987270355 0.696289002895355 0.26708984375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC777.02 /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPCC777.02 // |||transcription factor |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 14.9472247989442 24.1082833325697 9.36932122958417 5.76967100019379 15.0698200504442 Max fold change at or above threshold 2 24.1082833325697 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771360_at SPBP8B7.28c.S1 --- 24.0751948434226 --- --- --- --- 0.428171426057816 1.53532433509827 1.10986769199371 4.14939022064209 0.943848013877869 0.780517995357513 0.633789002895355 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.28c /DEF=sequence orphan --- --- --- --- --- --- SPBP8B7.28c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.25697942562874 3.58577018843605 24.0751948434226 2.59211059974808 9.69095546343581 Max fold change at or above threshold 1 24.0751948434226 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771516_at SPBC16C6.13c.S1 --- 24.0475744383989 --- --- --- --- 8.18350696563721 0.340304881334305 5.4070873260498 2.59988021850586 0.0676269978284836 0.696289002895355 0.0952147990465164 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16C6.13c /GEN=sec27 /DEF=coatomer (beta subunit) (predicted) --- --- --- --- --- --- SPBC16C6.13c // |sec27||coatomer beta' subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.40110702341176 -24.0475744383989 -23.2578544288466 -1.51347786195562 -3.14764769060793 Max fold change at or above threshold 3 24.0475744383989 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779299_at SPCC737.07c.S1 --- 24.0192723171296 --- --- --- --- 6.07687854766846 0.653297305107117 2.0241425037384 0.296715408563614 0.5 0.985840022563934 0.633789002895355 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC737.07c /DEF=DEADDEAH box helicase (predicted) --- --- --- --- --- --- SPCC737.07c // |||DEAD/DEAH box helicase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -24.0192723171296 -9.30185766903182 -12.5142458291362 -3.00219897385931 -20.4804953577785 Max fold change at or above threshold 1 24.0192723171296 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778991_at SPCC1840.10.S1 --- 24.0102243423462 --- --- --- --- 2.40102243423462 4.28161334991455 0.443435043096542 0.0916845574975014 0.466064006090164 0.366210997104645 0.753906011581421 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1840.10 /GEN=lsm8 /DEF=ribonucleoprotein (RNP) complex --- --- --- --- --- --- SPCC1840.10 // |lsm8||ribonucleoprotein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.81505186672754 1.78324587428497 -1.80198766546246 -5.41459785737295 -24.0102243423462 Max fold change at or above threshold 1 24.0102243423462 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770353_at YCR098C.S1 Plasma membrane permease, mediates uptake of the phosphatidylinositol metabolite glycerophosphoinositol as a source of the nutrients inositol and phosphate; expression and transport rate are regulated by phosphate and inositol availability 23.9951744646365 1667.69573974609 91.8319320678711 GIT1 1407 // glycerophosphodiester transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from mutant phenotype 1406 // glycerophosphodiester transporter activity // inferred from mutant phenotype 80.9242706298828 1393.59948730469 1941.7919921875 102.739593505859 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR098C /GEN=GIT1 /DB_XREF=GI:6319941 /SEG=NC_001135:-297045,298601 /DEF=Plasma membrane permease, mediates uptake of the phosphatidylinositol metabolite glycerophosphoinositol as a source of the nutrients inositol and phosphate; expression and transport rate are regulated by phosphate and inositol availability /NOTE=Git1p; go_component: plasma membrane [goid GO:0005886] [evidence IMP,ISS] [pmid 9691030]; go_function: organophosphate ester transporter activity [goid GO:0015605] [evidence IMP] [pmid 9691030]; go_process: organophosphate ester transport [goid GO:0015748] [evidence IMP] [pmid 9691030] --- --- --- --- --- S0000695 // span:46-68,88-110,117-139,183-205,218-237,276-298,310-327,337-356,363-380,395-417,429-451 // numtm:11 S0000695 // GIT1 SGDID:S0000695, Chr III from 298601-297045, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022528 // cdna:Genscan chromosome:SGD1:III:297045:298601:-1 // ensembl // 11 // --- /// GENEFINDER00000023312 // cdna:GeneFinder chromosome:SGD1:III:297045:298601:-1 // ensembl // 11 // --- /// YCR098C // cdna:known chromosome:SGD1:III:297045:298601:-1 gene:YCR098C // ensembl // 11 // --- --- No cerevisiae_gene 1.76568077439359 17.2210324103938 2.16639574254736 23.9951744646365 1.26957700954454 Max fold change at or above threshold 4 23.9951744646365 Max fold change at or above threshold -0.852560716341351 0.548390578132411 1.13344847332283 -0.82927833511389 879.763835906982 936.988474797679 1.06504545487676 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770959_at SPAC12G12.01c.S1 --- 23.9833284795092 --- --- --- --- 4.77725791931152 6.97637414932251 3.30342555046082 5.07568740844727 0.274170011281967 0.129638999700546 0.219482004642487 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12G12.01c /DEF=WD repeat protein --- --- --- --- --- --- SPAC12G12.01c // ||SPAC630.02|WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -23.9833284795092 1.46033022858601 1.03662624333292 -1.44615274246005 1.06246878317567 Max fold change at or above threshold 4 23.9833284795092 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774372_x_at SPCC1450.08c.S1 --- 23.9636563636639 --- --- --- --- 3.86691474914551 2.46050763130188 1.68892049789429 0.31219083070755 0.149657994508743 0.567627012729645 0.780517995357513 0.6572265625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1450.08c /GEN=wtf16 /DEF=wtf element --- --- --- --- --- --- SPCC1450.08c // |wtf16||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- SPCC285.07c // sanger // 2 // Cross Hyb Matching Probes /// SPCC830.02 // sanger // 2 // Cross Hyb Matching Probes /// SPCC162.04c // sanger // 1 // Cross Hyb Matching Probes No No -4.05011029541441 -1.57159226004899 -23.9636563636639 -2.28957772373934 -12.3863815615005 Max fold change at or above threshold 1 23.9636563636639 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776098_at SPBC1604.09c.S1 --- 23.9266619379883 --- --- --- --- 6.48426723480225 1.58592820167542 2.53513622283936 0.385103285312653 0.334473013877869 0.753906011581421 0.601073980331421 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1604.09c /DEF=exonuclease (predicted) --- --- --- --- --- --- SPBC1604.09c // |||exonuclease |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -23.9266619379883 -4.08862597181392 -1.42800868283429 -2.55775889925941 -16.8377354390469 Max fold change at or above threshold 2 23.9266619379883 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776903_at SPAC3H8.02.S1 --- 23.9036953294881 --- --- --- --- 0.322587221860886 2.05667018890381 1.55231904983521 1.32812333106995 0.828612983226776 0.805419981479645 0.828612983226776 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H8.02 /DEF=sec14 cytosolic factor family --- --- --- --- --- --- SPAC3H8.02 // |||sec14 cytosolic factor family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.30493972273873 6.37554760241166 23.9036953294881 4.81209094669173 4.117098387867 Max fold change at or above threshold 0 23.9036953294881 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773781_at SPBP8B7.01c.S1 --- 23.8967347145081 --- --- --- --- 2.38967347145081 0.692094624042511 0.390022486448288 0.0837918147444725 0.71875 0.870360970497131 0.981445014476776 0.968017578125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.01c /DEF=sequence orphan --- --- --- --- --- --- SPBP8B7.01c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -9.96887169643529 -3.45281322587477 -20.0563718061428 -6.12701460680433 -23.8967347145081 Max fold change at or above threshold 0 23.8967347145081 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769855_at SPBP8B7.11.S1 --- 23.8468074194466 --- --- --- --- 8.04837226867676 0.337503135204315 3.55681729316711 4.32579374313354 0.0805663987994194 0.976073980331421 0.432372987270355 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.11 /GEN=nxt3 /DEF=RNA-binding protein --- --- --- --- --- --- SPBP8B7.11 // |nxt3||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.91846667141037 -23.8468074194466 -2.63754799198766 -2.26280171436925 -1.86055386516109 Max fold change at or above threshold 3 23.8468074194466 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773090_at SPAC27D7.04.S1 --- 23.8051986694336 --- --- --- --- 2.38051986694336 0.213222622871399 0.129970967769623 0.248034656047821 0.533936023712158 0.962401986122131 0.985840022563934 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27D7.04 /GEN=omt2 /DEF=pterin-4-alpha-carbinolamine dehydratase (predicted) --- --- --- --- --- --- SPAC27D7.04 // |omt2||4-alpha-hydroxytetrahydrobiopterin dehydratase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -23.8051986694336 -11.164480742642 -11.6274995771262 -18.3157816533528 -9.59752925205902 Max fold change at or above threshold 0 23.8051986694336 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775589_at SPAPB17E12.13.S1 --- 23.7729198204048 --- --- --- --- 15.4072666168213 10.7391815185547 16.9748706817627 10.2244215011597 0.00585938012227416 0.000732421991415322 0.0107421996071935 0.0461426004767418 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB17E12.13 /GEN=rpl1802 /DEF=60S ribosomal protein L18 --- --- --- --- --- --- SPAPB17E12.13 // |rpl1802|rpl18-2|60S ribosomal protein L18|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -23.7729198204048 -1.43467792123648 -1.80289703303027 1.1017444627868 -1.50690839722069 Max fold change at or above threshold 4 23.7729198204048 Max fold change at or above threshold PAPAPP No 3 0 PPPP 0 4 0 No No 3 < x
1776128_at SPBC16A3.07c.S1 --- 23.7527477873614 --- --- --- --- 0.703863203525543 16.7186851501465 11.0391206741333 5.41344022750854 0.567627012729645 0.149657994508743 0.129638999700546 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16A3.07c /DEF=sequence orphan --- --- --- --- --- --- SPBC16A3.07c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.47959926716073 23.7527477873614 -1.45207287032309 15.6836166727285 7.69104024815255 Max fold change at or above threshold 3 23.7527477873614 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772807_at YOR381W-A.S1 Identified by fungal homology and RT-PCR 23.7092280387878 0.817081660032272 1.47043868899345 --- --- --- --- 2.37092280387878 0.291471064090729 1.34269225597382 0.569954574108124 0.432372987270355 0.633789002895355 0.45751953125 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR381W-A /GEN=FRE3 /DB_XREF=GI:33438889 /SEG=NC_001147:+1058419,1058586 /DEF=Identified by fungal homology and RT-PCR /NOTE=Yor381w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028587 // YOR381W-A SGDID:S0028587, Chr XV from 1058419-1058586, Uncharacterized ORF // sgd // 10 // --- /// YOR381W-A // cdna:known chromosome:SGD1:XV:1058419:1058586:1 gene:YOR381W-A // ensembl // 10 // --- --- No cerevisiae_gene -13.1120679695067 -8.13433337293738 -23.7092280387878 -1.76579763034324 -4.15984520799548 Max fold change at or above threshold 0 23.7092280387878 Max fold change at or above threshold 1.31789226551349 -0.915302666270953 0.213640022313386 -0.616229621555919 1.14376017451286 0.931155498425955 0.814117783758769 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778535_at SPAC29B12.05c.S1 --- 23.6877193606649 --- --- --- --- 0.273069947957993 2.67705464363098 6.4684042930603 3.19555759429932 0.633789002895355 0.398925989866257 0.0805663987994194 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29B12.05c /DEF=S-adenosylmethionine-dependent methyltransferase activity (predicted) --- --- --- --- --- --- SPAC29B12.05c // |||S-adenosylmethionine-dependent methyltransferase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.43699334705344 9.80354910399296 4.05111153286905 23.6877193606649 11.7023408038694 Max fold change at or above threshold 3 23.6877193606649 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773474_at SPAC12G12.10.S1 --- 23.6572130767776 --- --- --- --- 0.23124597966671 4.44905042648315 5.47063541412354 3.22377324104309 0.828612983226776 0.466064006090164 0.0461426004767418 0.219482004642487 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12G12.10 /DEF=WD repeat protein --- --- --- --- --- --- SPAC12G12.10 // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.04035387700825 19.2394714619276 23.5588664094923 23.6572130767776 13.9408834077438 Max fold change at or above threshold 3 23.6572130767776 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1771965_at SPAC4G9.09c.S1 --- 23.6297750783417 --- --- --- --- 0.358816415071487 1.39238500595093 8.47875118255615 2.84199571609497 0.920166015625 0.870360970497131 0.601073980331421 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G9.09c /GEN=arg11 /DEF=N-acetyl-gamma-glutamyl-phosphate reductase (PMID 1313366) --- --- --- --- --- --- SPAC4G9.09c // |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/acetylglutamate kinase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 13.142333217413 3.88049416767491 2.72413572858403 23.6297750783417 7.92047296812983 Max fold change at or above threshold 2 23.6297750783417 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776185_at SPBC839.13c.S1 --- 23.6259745167767 --- --- --- --- 0.567786395549774 1.57872641086578 2.14488935470581 2.70606017112732 0.567627012729645 0.398925989866257 0.432372987270355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC839.13c /GEN=rpl1601 /DEF=60S ribosomal protein L13L16 --- --- --- --- --- --- AB016008 // Schizosaccharomyces pombe mRNA for ribosomal protein rp22 homolog, partial cds. // gb // 11 // --- /// SPBC839.13c // |rpl1601||60S ribosomal protein L13/L16|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 23.6259745167767 2.78049355046124 20.1003116249163 3.77763428556432 4.76598275748947 Max fold change at or above threshold 1 23.6259745167767 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779992_at SPCC1620.14c.S1 --- 23.5962862998277 --- --- --- --- 4.04301309585571 6.80905866622925 0.180840060114861 0.171341076493263 0.432372987270355 0.366210997104645 0.828612983226776 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1620.14c /GEN=snf22 /DEF=SNF2 family --- --- --- --- --- --- SPCC1620.14c // |snf22|SPCC830.01c|SNF2 family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -10.4053466793223 1.68415449190824 -1.47545708594366 -22.356844458511 -23.5962862998277 Max fold change at or above threshold 2 23.5962862998277 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778860_at SPCC162.04c.S1 --- 23.5961276141121 --- --- --- --- 3.61954832077026 0.266281455755234 0.290908753871918 1.82299864292145 0.366210997104645 0.991943001747131 0.888427972793579 0.45751953125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC162.04c /GEN=wtf13 /DEF=wtf element --- --- --- --- --- --- SPCC162.04c // |wtf13||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -13.1707317813764 -13.5929417634601 -23.5961276141121 -12.4422117677624 -1.9854915058904 Max fold change at or above threshold 1 23.5961276141121 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771968_at SPAC167.06c.S1 --- 23.5289115405679 --- --- --- --- 0.35393500328064 0.335222840309143 8.32770538330078 0.398074328899384 0.888427972793579 0.932372987270355 0.5 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC167.06c /DEF=hypothetical protein --- --- --- --- --- --- SPAC167.06c // ||SPAC57A7.02c|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.28104723217213 -1.05582007167006 3.66899032745463 23.5289115405679 1.1247102581254 Max fold change at or above threshold 1 23.5289115405679 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769899_at SPAC688.10.S1 --- 23.4352982785158 --- --- --- --- 0.512331128120422 12.0066328048706 9.46520805358887 1.23534142971039 0.888427972793579 0.398925989866257 0.129638999700546 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC688.10 /GEN=rev3 /DEF=DNA polymerase zeta (catalytic subunit) --- --- --- --- --- --- SPAC688.10 // |rev3||DNA polymerase zeta |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 13.9639238717048 23.4352982785158 18.1688341211496 18.4747861960167 2.41121681253774 Max fold change at or above threshold 2 23.4352982785158 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775805_at SPBC14C8.06.S1 --- 23.4179398100319 --- --- --- --- 6.63720035552979 10.9198036193848 7.85379028320313 0.283423751592636 0.432372987270355 0.149657994508743 0.0676269978284836 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14C8.06 /GEN=arc1 /DEF=WD repeat protein --- --- --- --- --- --- SPBC14C8.06 // |arc1|sop2|Arp2/3 protein complex Sop2p subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- D89122 // gb // 3 // Cross Hyb Matching Probes No No -1.38139337227388 1.6452424266938 -1.1404064187842 1.18329865945055 -23.4179398100319 Max fold change at or above threshold 3 23.4179398100319 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771883_at SPAC23C11.04c.S1 --- 23.3943685844067 --- --- --- --- 2.93497204780579 1.16209924221039 4.44023132324219 1.45712530612946 0.303710997104645 0.665526986122131 0.398925989866257 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C11.04c /GEN=pnk1 /DEF=DNA kinasephosphatase (PMID 11729194) --- --- --- --- --- --- SPAC23C11.04c // |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.1136040824798 -2.52557780024301 -23.3943685844067 1.51287005495052 -2.01422076430881 Max fold change at or above threshold 2 23.3943685844067 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770061_at SPAC57A10.04.S1 --- 23.3599106533717 --- --- --- --- 6.55017900466919 0.280402570962906 6.27254867553711 3.81737399101257 0.725830018520355 0.994140982627869 0.601073980331421 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC57A10.04 /DEF=sequence orphan --- --- --- --- --- --- SPAC57A10.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.35112214167979 -23.3599106533717 -3.23821711275858 -1.04426116774746 -1.71588610916577 Max fold change at or above threshold 3 23.3599106533717 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778580_at SPCC285.15c.S1 --- 23.2773966795444 --- --- --- --- 2.7194812297821 0.191064238548279 4.72278213500977 0.663893043994904 0.24609400331974 0.567627012729645 0.129638999700546 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC285.15c /GEN=rps2802 /DEF=40S ribosomal protein S28 --- --- --- --- --- --- D85030 // Fission yeast ribosomal protein S33 homolog mRNA, partial cds. // gb // 9 // --- /// SPCC285.15c // |rps2802|rps28-2, rps28|40S ribosomal protein S28|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.77518432526638 -14.233334560381 -23.2773966795444 1.73664818248743 -4.09626408106029 Max fold change at or above threshold 2 23.2773966795444 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779251_at SPBC409.15.S1 --- 23.2412397350452 --- --- --- --- 13.0216093063354 2.56727886199951 0.560280323028564 5.9706244468689 0.014160200022161 0.303710997104645 0.49169921875 0.194580003619194 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC409.15 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC409.15 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.16602227344803 -5.07214447915239 -1.29290117404276 -23.2412397350452 -2.18094596674293 Max fold change at or above threshold 3 23.2412397350452 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1778258_at SPAC13C5.04.S1 --- 23.2201715648728 --- --- --- --- 0.568465411663055 1.35306084156036 13.1998643875122 0.440331518650055 0.665526986122131 0.753906011581421 0.24609400331974 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13C5.04 /DEF=glutamine amidotransferase (predicted) --- --- --- --- --- --- SPAC13C5.04 // |||glutamine amidotransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.15131494169137 2.3801990654136 6.19885004792253 23.2201715648728 -1.29099414324422 Max fold change at or above threshold 1 23.2201715648728 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773133_at SPAC27D7.09c.S1 --- 23.2133008646319 --- --- --- --- 0.346284955739975 7.0222806930542 8.03841686248779 3.65823793411255 0.633789002895355 0.24609400331974 0.018554700538516 0.0952147990465164 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27D7.09c /DEF=predicted N-terminal signal sequence --- --- --- --- --- --- SPAC27D7.09c // |||predicted N-terminal signal sequence|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.33340926958762 20.2789078088833 13.4839089298539 23.2133008646319 10.5642415977768 Max fold change at or above threshold 3 23.2133008646319 Max fold change at or above threshold AAAMPA No 4 0 AAPA 3 1 0 No No x = 1
1777557_at SPBC2F12.11c.S1 --- 23.2099012534664 --- --- --- --- 6.25656080245972 3.89386749267578 8.4697961807251 0.517134726047516 0.0805663987994194 0.35693359375 0.0676269978284836 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2F12.11c /GEN=rep2 /DEF=transcription factor --- --- --- --- --- --- SPBC2F12.11c // |rep2||transcriptional activator Rep2|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -23.2099012534664 -1.60677291002533 -1.20856947610592 1.35374632296313 -12.0985122199758 Max fold change at or above threshold 3 23.2099012534664 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-TagG_at AFFX-r2-TagG --- 23.1741313594313 --- --- --- --- 0.333464384078979 7.72774744033813 0.761221170425415 0.638009965419769 0.953857004642487 0.219482004642487 0.780517995357513 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Clone 76D3, synthetic insert (760 bp)+ poly A tail (21 bp), target sequence 1-760 --- --- --- --- --- --- AFFX-r2-TagG // --- // unknown // --- // --- /// AFFX-r2-TagG // --- // unknown // --- // --- /// AFFX-r2-TagG // --- // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-TagG // --- // unknown // --- // --- /// AFFX-r2-TagG // --- // affx // --- // --- /// AFFX-r2-TagG // --- // affx // --- // --- /// AFFX-r2-TagG // --- // affx // --- // --- /// AFFX-r2-TagG // --- // affx // --- // --- /// AFFX-r2-TagG // --- // affx // --- // --- /// AFFX-r2-TagG // --- // affx // --- // --- /// AFFX-r2-TagG // --- // affx // --- // --- /// AFFX-r2-TagG // --- // affx // --- // --- /// AFFX-r2-TagG // --- // affx // --- // --- /// AFFX-r2-TagG // --- // affx // --- // --- /// AFFX-r2-TagG // --- // affx // --- // --- /// AFFX-r2-TagG // --- // affx // --- // --- --- AFFX_control No 3.00033282069651 23.1741313594313 2.85140110005999 2.28276603670251 1.91327768685684 Max fold change at or above threshold 1 23.1741313594313 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773711_at SPAC15A10.07.S1 --- 23.1665645595215 --- --- --- --- 3.76795482635498 0.474172085523605 2.11242175102234 0.296996057033539 0.366210997104645 0.919434010982513 0.567627012729645 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15A10.07 /DEF=sequence orphan --- --- --- --- --- --- SPAC15A10.07 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.05920295344524 -7.94638685276931 -23.1665645595215 -1.78371332549072 -12.6868850179027 Max fold change at or above threshold 1 23.1665645595215 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778478_at SPAC222.03c.S1 --- 23.1644430195107 --- --- --- --- 2.87459087371826 0.151427656412125 0.124094970524311 0.795298337936401 0.274170011281967 0.941650390625 0.904784977436066 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC222.03c /GEN=tim10 /DEF=TIM22 inner membrane protein import complex --- --- --- --- --- --- SPAC222.03c // |tim10||TIM22 inner membrane protein import complex subunit Tim10|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 9 // --- --- No No 1.22466556102112 -18.9832619867984 -2.99982931918258 -23.1644430195107 -3.61448117844317 Max fold change at or above threshold 1 23.1644430195107 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769524_at SPAC3F10.09.S1 --- 23.1278449837192 --- --- --- --- 5.95855951309204 10.6864833831787 12.3948802947998 7.57826137542725 0.274170011281967 0.0676269978284836 0.0805663987994194 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3F10.09 /DEF=1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase activity --- --- --- --- --- --- SPAC3F10.09 // |||1-|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- SPAC3F10.10c // sanger // 3 // Negative Strand Matching Probes No No -23.1278449837192 1.79346759224248 -3.15113409008266 2.08018066574077 1.27182775615087 Max fold change at or above threshold 4 23.1278449837192 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779588_at SPAC513.04.S1 --- 23.1005527122812 --- --- --- --- 4.76093721389771 4.77472829818726 0.637509226799011 1.65971505641937 0.5 0.398925989866257 0.828612983226776 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC513.04 /DEF=dubious --- --- --- --- --- --- SPAC513.04 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -23.1005527122812 1.00289671627034 -4.37203753387599 -7.46802871827092 -2.86852685675385 Max fold change at or above threshold 2 23.1005527122812 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770826_at SPBP16F5.04.S1 --- 23.0934714189579 --- --- --- --- 0.49334704875946 11.3930959701538 6.01084995269775 1.52696681022644 0.780517995357513 0.334473013877869 0.398925989866257 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP16F5.04 /GEN=ubc3 /DEF=ubiquitin conjugating enzyme --- --- --- --- --- --- D85544 // Schizosaccharomyces pombe mRNA for UbcP3, complete cds. // gb // 10 // --- /// SPBP16F5.04 // |ubc3|ubcp3|ubiquitin conjugating enzyme|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.26243996911921 23.0934714189579 4.47912876540868 12.1838165806652 3.09511694468641 Max fold change at or above threshold 2 23.0934714189579 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774958_at SPAC2F3.06c.S1 --- 23.087600770826 --- --- --- --- 0.357553958892822 2.84596061706543 2.51686120033264 2.72278165817261 0.5 0.432372987270355 0.466064006090164 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F3.06c /GEN=kap104 /DEF=karyopherin --- --- --- --- --- --- SPAC2F3.06c // |kap104||karyopherin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.13363645153332 7.95952763571138 23.087600770826 7.03910874914149 7.61502310477499 Max fold change at or above threshold 3 23.087600770826 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777360_at SPBC3B9.21.S1 --- 23.068648087285 --- --- --- --- 2.99851679801941 0.357094764709473 3.21693706512451 0.306369781494141 0.5 0.559326171875 0.1884765625 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B9.21 /DEF=Dcp1 decapping family --- --- --- --- --- --- SPBC3B9.21 // |||Dcp1 decapping family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -23.068648087285 -8.3969777615165 -1.44781215208974 1.07284276921489 -9.7872472389277 Max fold change at or above threshold 2 23.068648087285 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775346_at SPCC63.07.S1 --- 23.0624334857289 --- --- --- --- 4.88282251358032 0.322135448455811 0.755650162696838 0.211721912026405 0.533936023712158 0.995850026607513 0.828612983226776 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC63.07 /DEF=tRNA guanylyltransferase activity (predicted) --- --- --- --- --- --- SPCC63.07 // |||tRNA guanylyltransferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -15.5467243392276 -15.1576690394883 -1.39654262306853 -6.46175009895323 -23.0624334857289 Max fold change at or above threshold 1 23.0624334857289 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769583_at SPBC19C7.05.S1 --- 23.055011954576 --- --- --- --- 0.575949370861053 7.24566888809204 13.2785196304321 4.87478971481323 0.888427972793579 0.366210997104645 0.194580003619194 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C7.05 /DEF=conserved yeast protein --- --- --- --- --- --- SPBC19C7.05 // |||conserved yeast protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.83693674739287 12.5803920529675 2.46137139783213 23.055011954576 8.46392054830331 Max fold change at or above threshold 3 23.055011954576 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775940_at SPBC18E5.03c.S1 --- 23.0340731589087 --- --- --- --- 9.4768648147583 0.411428093910217 1.49785876274109 0.541593253612518 0.111571997404099 0.943848013877869 0.725830018520355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18E5.03c /GEN=sim4 /DEF=localization centromere --- --- --- --- --- --- SPBC18E5.03c // |sim4||kinetochore protein Sim4p |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.6956985178527 -23.0340731589087 -2.45364404750985 -6.32694153180076 -17.4981219790793 Max fold change at or above threshold 1 23.0340731589087 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770265_at SPAC6B12.13.S1 --- 23.0336362574688 --- --- --- --- 5.4724006652832 1.32615995407104 2.20370984077454 4.46094369888306 0.5 0.805419981479645 0.567627012729645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6B12.13 /DEF=protein phosphatase inhibitor (predicted) --- --- --- --- --- --- SPAC6B12.13 // |||protein phosphatase inhibitor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -23.0336362574688 -4.12650121765782 -1.07882660365677 -2.48326733584845 -1.22673609771255 Max fold change at or above threshold 2 23.0336362574688 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769330_at SPBC428.08c.S1 --- 23.0309425707847 --- --- --- --- 0.331890732049942 0.561309337615967 7.64375638961792 0.990845322608948 0.870360970497131 0.919434010982513 0.129638999700546 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC428.08c /GEN=clr4 /DEF=histone H3 methyltransferase --- --- --- --- --- --- SPBC428.08c // |clr4||histone H3 methyltransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.63607992112548 1.6912473998566 9.40513136869573 23.0309425707847 2.98545643769242 Max fold change at or above threshold 1 23.0309425707847 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779692_at SPAC186.08c.S1 --- 23.0098281744911 --- --- --- --- 6.78400945663452 6.42365407943726 8.04086112976074 4.09298086166382 0.0107421996071935 0.194580003619194 0.018554700538516 0.0375977009534836 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC186.08c /DEF=L-lactate dehydrogenase (predicted) --- --- --- --- --- --- SPAC186.08c // |||L-lactate dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -23.0098281744911 -1.05609819158083 -1.41293619644831 1.18526679261879 -1.65747402343748 Max fold change at or above threshold 4 23.0098281744911 Max fold change at or above threshold PAAMPP No 4 0 PAPP 1 3 0 No No 2 < x = 3
1774127_at SPCC4B3.07.S1 --- 22.9921840530509 --- --- --- --- 5.80530166625977 0.371468782424927 3.21864748001099 3.99243378639221 0.334473013877869 0.962401986122131 0.5 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4B3.07 /DEF=coiled-coil --- --- --- --- --- --- SPCC4B3.07 // |||coiled-coil|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -22.9921840530509 -15.6279664427333 -1.20489809394199 -1.80364631489247 -1.45407587874006 Max fold change at or above threshold 3 22.9921840530509 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1780139_at SPACUNK4.14.S1 --- 22.9811141396457 --- --- --- --- 0.475220054388046 10.9210863113403 3.33725786209106 1.76448166370392 0.780517995357513 0.334473013877869 0.432372987270355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPACUNK4.14 /DEF=BRCT domain --- --- --- --- --- --- SPACUNK4.14 // |||BRCT domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.77905357174336 22.9811141396457 7.16458133423606 7.0225526706539 3.71297811910756 Max fold change at or above threshold 2 22.9811141396457 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770152_at SPAC1296.06.S1 --- 22.9570508142743 --- --- --- --- 6.15044546127319 10.6353073120117 3.13379192352295 4.88097047805786 0.24609400331974 0.129638999700546 0.274170011281967 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1296.06 /DEF=NADPH cytochrome reductase --- --- --- --- --- --- SPAC1296.06 // |||NADPH cytochrome reductase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -22.9570508142743 1.72919301194976 -1.30534007214254 -1.96262087955061 -1.26008659321383 Max fold change at or above threshold 4 22.9570508142743 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774405_at SPCC306.03c.S1 --- 22.8967104039378 --- --- --- --- 3.69590926170349 0.675209939479828 0.274032533168793 0.174555867910385 0.366210997104645 0.904784977436066 0.919434010982513 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC306.03c /GEN=cnd2 /DEF=condensin subunit --- --- --- --- --- --- SPCC306.03c // |cnd2||condensin subunit Cnd2|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -19.3295900030028 -5.47371868451873 -22.8967104039378 -13.4871185510918 -21.1732169531014 Max fold change at or above threshold 1 22.8967104039378 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773024_at SPAC21E11.08.S1 --- 22.8900261361945 --- --- --- --- 14.9719486236572 12.9516353607178 8.2435941696167 8.02416038513184 0.171387001872063 0.213134765625 0.303710997104645 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC21E11.08 /GEN=lcb2 /DEF=serine palmitoyltransferase (PMID 8921873) (predicted) --- --- --- --- --- --- SPAC21E11.08 // |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -22.8900261361945 -1.15598904745783 -3.03177661309331 -1.81619185947304 -1.86585859517453 Max fold change at or above threshold 4 22.8900261361945 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773456_at SPAPB1A10.02.S1 --- 22.8818875424062 --- --- --- --- 4.50086879730225 1.36571109294891 2.15190172195435 0.708262145519257 0.533936023712158 0.870360970497131 0.633789002895355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1A10.02 /DEF=sequence orphan --- --- --- --- --- --- SPAPB1A10.02 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -19.0890473841592 -3.29562293265389 -22.8818875424062 -2.09157730178058 -6.35480637469686 Max fold change at or above threshold 1 22.8818875424062 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771945_at SPCP31B10.04.S1 --- 22.8662148000384 --- --- --- --- 10.4186534881592 10.258373260498 3.89513659477234 4.09152984619141 0.0952147990465164 0.466064006090164 0.366210997104645 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP31B10.04 /DEF=hypothetical protein --- --- --- --- --- --- SPCP31B10.04 // |||hypothetical protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -22.8662148000384 -1.01562433181081 -9.90367268088696 -2.67478514158966 -2.5463955732493 Max fold change at or above threshold 4 22.8662148000384 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772136_at SPAC3F10.04.S1 --- 22.845076457206 --- --- --- --- 0.467698395252228 10.6846055984497 1.10389459133148 3.34508609771729 0.870360970497131 0.149657994508743 0.5 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3F10.04 /GEN=gsa1 /DEF=glutathione synthetase (large subunit) (PMID 8914526) --- --- --- --- --- --- SPAC3F10.04 // |gsa1|gsh2|glutathione synthetase large subunit Gsa1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 11.0860880344635 22.845076457206 -1.63574927415459 2.36027021374781 7.15222915381887 Max fold change at or above threshold 2 22.845076457206 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778497_at SPBC365.05c.S1 --- 22.8256899664689 --- --- --- --- 0.272682905197144 2.81039142608643 0.473349928855896 0.291002541780472 0.943848013877869 0.533936023712158 0.969726979732513 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC365.05c /GEN=slu7 /DEF=zinc finger protein --- --- --- --- --- --- SPBC365.05c // |slu7||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.09633930091672 10.3064452245533 22.8256899664689 1.73589880346065 1.06718293018803 Max fold change at or above threshold 1 22.8256899664689 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771545_at SPAC16.01.S1 --- 22.8154740758159 --- --- --- --- 6.92848491668701 0.968679308891296 1.78014361858368 0.303674817085266 0.194580003619194 0.828612983226776 0.5 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16.01 /GEN=rho2 /DEF=GTPase --- --- --- --- --- --- D38181 // Fission yeast mRNA for GTP binding protein Rho 2, complete cds, clone GP23. // gb // 11 // --- /// SPAC16.01 // |rho2||GTPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.98355479524116 -7.15250635901062 -2.8010144508743 -3.8920932245902 -22.8154740758159 Max fold change at or above threshold 1 22.8154740758159 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769476_at SPAC23G3.01.S1 --- 22.8035263906985 --- --- --- --- 5.6255464553833 5.31835031509399 0.707549214363098 5.53007936477661 0.0952147990465164 0.334473013877869 0.9296875 0.14453125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23G3.01 /GEN=rpb2 /DEF=DNA-directed RNA polymerase (II subunit) --- --- --- --- --- --- SPAC23G3.01 // |rpb2|SPAC521.06|DNA-directed RNA polymerase II subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.28706512937587 -1.05776154673705 -22.8035263906985 -7.95074934885928 -1.01726324059918 Max fold change at or above threshold 3 22.8035263906985 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776684_at SPBC16C6.12c.S1 --- 22.802146410744 --- --- --- --- 0.394076257944107 8.98578453063965 1.45027613639832 0.546661078929901 0.780517995357513 0.303710997104645 0.5 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16C6.12c /DEF=involved in cellular morphogenesis (predicted) --- --- --- --- --- --- SPBC16C6.12c // |||Las1-like protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.68513285947937 22.802146410744 -2.77901617652452 3.68019160546336 1.38719617817584 Max fold change at or above threshold 1 22.802146410744 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769966_at SPAP8A3.13c.S1 --- 22.7557775879473 --- --- --- --- 0.350202262401581 7.96912479400635 6.38974475860596 3.3681526184082 0.84521484375 0.567627012729645 0.194580003619194 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP8A3.13c /DEF=sequence orphan --- --- --- --- --- --- SPAP8A3.13c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.56486882041945 22.7557775879473 2.35406666316053 18.2458694435239 9.61773517769541 Max fold change at or above threshold 3 22.7557775879473 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773862_at SPAC323.03c.S1 --- 22.7544630404606 --- --- --- --- 6.63702535629272 10.2307233810425 8.70539951324463 5.52905321121216 0.274170011281967 0.274170011281967 0.24609400331974 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC323.03c /DEF=hypothetical protein --- --- --- --- --- --- SPAC323.03c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -22.7544630404606 1.54146215086288 -2.37837783804524 1.31164174399166 -1.20039093543787 Max fold change at or above threshold 4 22.7544630404606 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773911_at SPCC1672.10.S1 --- 22.7413467565583 --- --- --- --- 0.373610317707062 8.4964017868042 5.88489103317261 6.86581087112427 0.753906011581421 0.194580003619194 0.5 0.0239257998764515 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1672.10 /DEF=WD repeat protein --- --- --- --- --- --- SPCC1672.10 // |mis16||kinetochore protein Mis16p |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 6.15983016336103 22.7413467565583 13.4409701377171 15.7514146538822 18.3769305763862 Max fold change at or above threshold 3 22.7413467565583 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1773915_at SPBC14F5.03c.S1 --- 22.7400174334567 --- --- --- --- 0.289826959371567 0.671015024185181 4.15860080718994 6.15124320983887 0.888427972793579 0.888427972793579 0.24609400331974 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14F5.03c /GEN=kap123 /DEF=karyopherin --- --- --- --- --- --- SPBC14F5.03c // |kap123||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.46006875696081 2.31522638763539 22.7400174334567 14.3485644544837 21.2238475784883 Max fold change at or above threshold 2 22.7400174334567 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Bs-phe-5_at AFFX-r2-Bs-phe-5 --- 22.7075523448353 --- --- --- --- 0.121534019708633 0.417744338512421 2.75974011421204 0.175596505403519 0.932372987270355 0.828612983226776 0.274170011281967 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2116-2382 of gb:M24537.1 /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. --- --- --- --- --- --- AFFX-r2-Bs-phe-5 // --- // unknown // --- // --- /// AFFX-r2-Bs-phe-5 // --- // unknown // --- // --- /// AFFX-r2-Bs-phe-5 // --- // unknown // --- // --- /// AFFX-r2-Bs-phe-5 // --- // gb // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-r2-Bs-phe-5 // B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2116-2382 of gb:M24537.1 /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. // affx // --- // --- /// AFFX-r2-Bs-phe-5 // --- // unknown // --- // --- /// AFFX-r2-Bs-phe-5 // B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2116-2382 of gb:M24537.1 /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. // affx // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-phe-5 // --- // unknown // --- // --- /// AFFX-r2-Bs-phe-5 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-5 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-phe-5 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-5 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-5 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-5 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-5 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-5 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-5 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-5 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-5 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-5 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-5 // --- // affx // --- // --- 50812173 // gb // 10 // Negative Strand Matching Probes AFFX_control No 1.12879067092855 3.43726258305225 -1.21534019708633 22.7075523448353 1.4448341774961 Max fold change at or above threshold 1 22.7075523448353 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775210_at SPAPB17E12.09.S1 --- 22.6924096977205 --- --- --- --- 5.51888847351074 5.19695377349854 1.18622589111328 4.86450290679932 0.533936023712158 0.5 0.5 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB17E12.09 /DEF=sequence orphan --- --- --- --- --- --- SPAPB17E12.09 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.68307085724314 -1.06194680846574 -22.6924096977205 -4.65247682996636 -1.13452259752929 Max fold change at or above threshold 3 22.6924096977205 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777875_s_at SPAC977.03.S1 --- 22.6238232072267 --- --- --- --- 5.9457802772522 4.1190447807312 1.22826600074768 0.686231970787048 0.149657994508743 0.303710997104645 0.665526986122131 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC977.03 /DEF=sterol methyltransferase (putative) --- --- --- --- --- --- SPAC977.03 // |||sterol methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPBC1348.04 // ||SPAC1348.04|sterol methyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPAC750.03c // |||sterol methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -22.6238232072267 -1.44348522382335 -14.9088879735473 -4.84079203823344 -8.66438832692814 Max fold change at or above threshold 2 22.6238232072267 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771198_at SPAC22F3.02.S1 --- 22.6038024260437 --- --- --- --- 3.47007417678833 0.228305488824844 3.81454610824585 2.06137490272522 0.194580003619194 0.432372987270355 0.030273400247097 0.165771484375 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F3.02 /GEN=atf31 /DEF=transcription factor --- --- --- --- --- --- SPAC22F3.02 // |atf31||bZIP |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -22.6038024260437 -15.1992586540509 1.20508698794177 1.09926932794743 -1.68337849277235 Max fold change at or above threshold 2 22.6038024260437 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1769389_at SPBC17A3.05c.S1 --- 22.5974807120959 --- --- --- --- 6.67900371551514 7.11737537384033 9.16490173339844 1.6642199754715 0.303710997104645 0.239501953125 0.219482004642487 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17A3.05c /DEF=DNAJ domain protein --- --- --- --- --- --- SPBC17A3.05c // |||DNAJ domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -22.5974807120959 1.06563428873484 -3.63804755486579 1.37219593277192 -4.01329380367693 Max fold change at or above threshold 3 22.5974807120959 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775603_at SPBC354.13.S1 --- 22.5962829075875 --- --- --- --- 7.23653984069824 0.583028137683868 10.4772577285767 0.98426216840744 0.274170011281967 0.828612983226776 0.194580003619194 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC354.13 /GEN=rga6 /DEF=GTPase activating protein --- --- --- --- --- --- SPBC354.13 // |rga6||GTPase activating protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.96777535599617 -12.4119907307494 -22.5962829075875 1.44782699456067 -7.3522482860508 Max fold change at or above threshold 2 22.5962829075875 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779540_at SPAC644.04.S1 --- 22.5853527966346 --- --- --- --- 0.170684546232224 3.85497069358826 2.0506432056427 0.148120790719986 0.850341975688934 0.334473013877869 0.466064006090164 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC644.04 /GEN=pct1 /DEF=RNA 5-triphosphatase --- --- --- --- --- --- SPAC644.04 // |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 13.5015577357473 22.5853527966346 1.18514924248628 12.0142288854476 -1.1523334800102 Max fold change at or above threshold 1 22.5853527966346 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776848_at SPAPJ695.01c.S1 --- 22.5772053909997 --- --- --- --- 4.30199193954468 2.88882160186768 2.79711937904358 2.98088979721069 0.171387001872063 0.334473013877869 0.194580003619194 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPJ695.01c /DEF=33896 domain --- --- --- --- --- --- SPAPJ695.01c // |||33896 domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -19.6341188677679 -1.48918574160598 -22.5772053909997 -1.53800798484892 -1.44319053444048 Max fold change at or above threshold 4 22.5772053909997 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771890_at SPCC1906.02c.S1 --- 22.5197142326681 --- --- --- --- 0.503389358520508 11.3361845016479 1.32844424247742 5.02543878555298 0.943848013877869 0.303710997104645 0.567627012729645 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1906.02c /DEF=CUE domain protein --- --- --- --- --- --- SPCC1906.02c // |||CUE domain protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.60803138060253 22.5197142326681 1.37692777857768 2.63899945438218 9.98320425430337 Max fold change at or above threshold 2 22.5197142326681 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779847_at SPAC1786.04.S1 --- 22.4726655260136 --- --- --- --- 8.64014911651611 1.5164555311203 0.387675076723099 5.89811372756958 0.111571997404099 0.633789002895355 0.696289002895355 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1786.04 /DEF=hypothetical protein --- --- --- --- --- --- SPAC1786.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- SPNCRNA.88 // sanger // 2 // Negative Strand Matching Probes No No -2.58410599284867 -5.69759477888092 -22.4726655260136 -22.2870894604541 -1.46490039283736 Max fold change at or above threshold 2 22.4726655260136 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769787_at SPBC577.13.S1 --- 22.4724503683883 --- --- --- --- 4.4611988067627 1.5547559261322 0.246847912669182 2.98509764671326 0.194580003619194 0.5 0.696289002895355 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC577.13 /DEF=inositol polyphosphate phosphatase --- --- --- --- --- --- SPBC577.13 // |||inositol polyphosphate phosphatase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -22.4724503683883 -2.86938852058979 -9.25445031926566 -18.0726616584417 -1.4944900752827 Max fold change at or above threshold 2 22.4724503683883 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779023_at SPBC530.09c.S1 --- 22.4618930730967 --- --- --- --- 5.10533666610718 1.50685262680054 6.83183097839355 3.26386833190918 0.219482004642487 0.696289002895355 0.129638999700546 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC530.09c /DEF=cation dependent mannose-6-phosphate receptor (predicted) --- --- --- --- --- --- SPBC530.09c // |||cation dependent mannose-6-phosphate cargo receptor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -22.4618930730967 -3.38807961396146 1.42877106386142 1.33817442907303 -1.56419810695024 Max fold change at or above threshold 3 22.4618930730967 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1774749_at YJR155W.S1 Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role 22.4526728962843 3.85117661952972 1.0568825006485 AAD10 6081 // aldehyde metabolism // inferred from sequence similarity --- 18456 // aryl-alcohol dehydrogenase activity // inferred from sequence similarity 0.278529286384583 6.25372695922852 1.44862627983093 1.83523571491241 0.805419981479645 0.432372987270355 0.780517995357513 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR155W /GEN=AAD10 /DB_XREF=GI:6322615 /SEG=NC_001142:+727320,728186 /DEF=Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role /NOTE=Aad10p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: aryl-alcohol dehydrogenase activity [goid GO:0018456] [evidence ISS] [pmid 10572264]; go_process: aldehyde metabolism [goid GO:0006081] [evidence ISS] [pmid 10572264] --- --- --- --- --- --- S0003916 // AAD10 SGDID:S0003916, Chr X from 727320-728186, Verified ORF // sgd // 11 // --- /// GENSCAN00000024258 // cdna:Genscan chromosome:SGD1:X:727320:728186:1 // ensembl // 11 // --- /// GENEFINDER00000024506 // cdna:GeneFinder chromosome:SGD1:X:727320:728186:1 // ensembl // 11 // --- /// YJR155W // cdna:known chromosome:SGD1:X:727320:728186:1 gene:YJR155W // ensembl // 11 // --- --- No cerevisiae_gene 1.71311438223339 22.4526728962843 1.18099781165886 5.20098370492619 6.58902242824976 Max fold change at or above threshold 1 22.4526728962843 Max fold change at or above threshold -0.830928016600478 1.45128688868081 -0.384011789677213 -0.236347082403121 2.45402956008911 2.61815732559484 1.06688092440898 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778366_at SPAC26H5.04.S1 --- 22.4516891657246 --- --- --- --- 4.78314018249512 5.07462787628174 14.0823383331299 0.351221203804016 0.466064006090164 0.601073980331421 0.665526986122131 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26H5.04 /DEF=armadillo repeat protein (inferred from context) --- --- --- --- --- --- SPAC26H5.04 // |||armadillo repeat protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.29964424185413 1.06094065460456 -22.4516891657246 2.9441617422519 -13.6185974271762 Max fold change at or above threshold 3 22.4516891657246 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770703_at SPAC23C11.16.S1 --- 22.4107674941124 --- --- --- --- 5.5557804107666 6.75063753128052 9.64784049987793 4.17121267318726 0.0805663987994194 0.171387001872063 0.0375977009534836 0.0676269978284836 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C11.16 /GEN=plo1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPAC23C11.16 // |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -22.4107674941124 1.21506557714167 1.66986939501083 1.73654100532506 -1.33193410311572 Max fold change at or above threshold 4 22.4107674941124 Max fold change at or above threshold AAAPPA No 4 0 AAPA 3 1 0 No No x = 1
1772980_at SPBC21C3.16c.S1 --- 22.3970615376278 --- --- --- --- 7.22968626022339 1.12485539913177 0.997791767120361 0.322796195745468 0.303710997104645 0.962401986122131 0.850341975688934 0.968505859375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21C3.16c /GEN=spt4 /DEF=transcriptional regulator --- --- --- --- --- --- SPBC21C3.16c // |spt4||transcription elongation factor Spt4|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.59824555949223 -6.42721390305248 -19.9395042051335 -7.24568642321869 -22.3970615376278 Max fold change at or above threshold 1 22.3970615376278 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780173_at SPAC31A2.02.S1 --- 22.3566193310298 --- --- --- --- 4.14206075668335 8.74312496185303 4.54954051971436 0.185272231698036 0.5 0.5 0.24609400331974 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31A2.02 /DEF=DUF343 --- --- --- --- --- --- SPAC31A2.02 // |trm112||tRNA methyltransferase regulatory subunit |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.83258667930846 2.11081523798165 -4.11098507942303 1.09837609512934 -22.3566193310298 Max fold change at or above threshold 3 22.3566193310298 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775566_at SPBC17G9.08c.S1 --- 22.3276602342099 --- --- --- --- 0.30544438958168 4.50766754150391 6.81985855102539 5.04249668121338 0.932372987270355 0.194580003619194 0.018554700538516 0.194580003619194 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17G9.08c /GEN=csx2 /DEF=ADP-ribosylation factor (ARF) (predicted) --- --- --- --- --- --- SPBC17G9.08c // |csx2||ADP-ribosylation factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.51103437960319 14.7577355985401 6.25254783070331 22.3276602342099 16.5087225472345 Max fold change at or above threshold 3 22.3276602342099 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1774808_at SPAC328.06.S1 --- 22.3205780982971 --- --- --- --- 2.23205780982971 3.67470479011536 2.79565715789795 1.74093592166901 0.274170011281967 0.334473013877869 0.334473013877869 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC328.06 /GEN=ubp2 /DEF=ubiquitin C-terminal hydrolase activity --- --- --- --- --- --- SPAC328.06 // |ubp2||ubiquitin C-terminal hydrolase activity|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -22.3205780982971 1.64633047313219 -7.86817389031496 1.25250212856773 -1.28210221987371 Max fold change at or above threshold 2 22.3205780982971 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774580_at SPAC17A5.13.S1 --- 22.2906021917906 --- --- --- --- 0.568310618400574 12.6679859161377 2.04956555366516 0.824448764324188 0.665526986122131 0.274170011281967 0.398925989866257 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A5.13 /DEF=GTP cyclohydrolase (predicted) --- --- --- --- --- --- SPAC17A5.13 // |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.7409155219845 22.2906021917906 9.83855592275349 3.60641784141454 1.45070096815097 Max fold change at or above threshold 1 22.2906021917906 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777755_at SPAC12G12.15.S1 --- 22.2687378718869 --- --- --- --- 0.237128734588623 0.312799990177155 5.28055763244629 4.55268716812134 0.870360970497131 0.976073980331421 0.567627012729645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12G12.15 /GEN=sif3 /DEF=localization spindle pole body (associated with) (pers. comm. Osami Niwa) --- --- --- --- --- --- SPAC12G12.15 // |sif3||sad1-interacting factor 3|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.74092691460803 1.31911466031229 3.50173991292895 22.2687378718869 19.1992217898833 Max fold change at or above threshold 2 22.2687378718869 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774141_at SPCP1E11.10.S1 --- 22.2640351689267 --- --- --- --- 0.341558426618576 7.60446882247925 5.71740388870239 1.10629904270172 0.725830018520355 0.111571997404099 0.0239257998764515 0.366210997104645 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP1E11.10 /DEF=ankyrin repeat protein --- --- --- --- --- --- SPCP1E11.10 // |||ankyrin repeat protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.92048695732296 22.2640351689267 3.09773795003298 16.7391680108865 3.23897452524907 Max fold change at or above threshold 2 22.2640351689267 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1779290_at SPCC4G3.14.S1 --- 22.2297979059219 --- --- --- --- 0.415634393692017 9.23946857452393 0.455043464899063 0.337030589580536 0.753906011581421 0.0561522990465164 0.696289002895355 0.665526986122131 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4G3.14 /DEF=DNAJ domain protein --- --- --- --- --- --- SPCC4G3.14 // |mdj1||DNAJ domain protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.94661437494586 22.2297979059219 2.39962367284519 1.09481667495556 -1.23322453967549 Max fold change at or above threshold 1 22.2297979059219 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1769449_at SPCC830.04c.S1 --- 22.2225531682027 --- --- --- --- 0.27719983458519 6.16008806228638 3.42562031745911 1.8305960893631 0.633789002895355 0.129638999700546 0.219482004642487 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC830.04c /DEF=sequence orphan --- --- --- --- --- --- SPCC830.04c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 9.27647422403984 22.2225531682027 -1.17394292029264 12.3579450275838 6.60388593702611 Max fold change at or above threshold 2 22.2225531682027 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769975_at SPAC869.01.S1 --- 22.1875309640847 --- --- --- --- 7.31944751739502 1.78794836997986 3.40077805519104 4.29416942596436 0.334473013877869 0.398925989866257 0.219482004642487 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC869.01 /DEF=amidase (predicted) --- --- --- --- --- --- SPAC869.01 // |||amidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.17941489165937 -4.09376894785696 -22.1875309640847 -2.15228615293562 -1.70450832077993 Max fold change at or above threshold 3 22.1875309640847 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777251_at SPBC1861.09.S1 --- 22.1814517469078 --- --- --- --- 0.529091656208038 11.7360210418701 9.71898746490479 7.8285231590271 0.696289002895355 0.149657994508743 0.194580003619194 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1861.09 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPBC1861.09 // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 13.1071155504561 22.1814517469078 17.1944729366875 18.3691943557758 14.7961568986621 Max fold change at or above threshold 3 22.1814517469078 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775338_at SPAC22H10.05c.S1 --- 22.136210978135 --- --- --- --- 10.212851524353 5.98543453216553 0.461364030838013 0.953632175922394 0.018554700538516 0.274170011281967 0.780517995357513 0.303710997104645 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22H10.05c /DEF=CF I component (subunit A) (predicted) --- --- --- --- --- --- SPAC22H10.05c // |||CF I component |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.23838243130937 -1.70628405832016 -1.22292539390106 -22.136210978135 -10.7094242226828 Max fold change at or above threshold 2 22.136210978135 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1772159_at SPCC1183.01.S1 --- 22.099283911906 --- --- --- --- 5.20946073532104 1.22548305988312 0.844810605049133 0.269887328147888 0.149657994508743 0.633789002895355 0.665526986122131 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1183.01 /GEN=sec15 /DEF=localization exocyst (predicted) --- --- --- --- --- --- SPCC1183.01 // |sec15|SPCC1672.13|exocyst complex subunit Sec15p |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -15.8744649421428 -4.25094471384852 -22.099283911906 -6.16642440824718 -19.3023539529298 Max fold change at or above threshold 1 22.099283911906 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778161_at SPBC15D4.02.S1 --- 22.0885554949199 --- --- --- --- 0.311063766479492 6.87094926834106 0.906443178653717 2.29676914215088 0.976073980331421 0.303710997104645 0.753906011581421 0.525634765625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC15D4.02 /DEF=zinc finger protein --- --- --- --- --- --- SPBC15D4.02 // |||transcription factor|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.36777896920049 22.0885554949199 1.37639371547088 2.91401081171399 7.38359587214186 Max fold change at or above threshold 1 22.0885554949199 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771642_at SPBC21B10.06c.S1 --- 22.0727758813147 --- --- --- --- 6.51011085510254 2.80803298950195 7.97018766403198 1.004065990448 0.466064006090164 0.718505859375 0.432372987270355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21B10.06c /DEF=hypothetical protein --- --- --- --- --- --- SPBC21B10.06c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -22.0727758813147 -2.31838830934006 -1.07415908943746 1.22427833280059 -6.48374799767676 Max fold change at or above threshold 3 22.0727758813147 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778445_at SPAC1527.02.S1 --- 22.0366761010047 --- --- --- --- 3.5424439907074 3.33520531654358 0.525487184524536 0.160752192139626 0.334473013877869 0.656494140625 0.633789002895355 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1527.02 /GEN=sft2 /DEF=involved in intracellular protein transport --- --- --- --- --- --- SPAC1527.02 // |sft2||involved in intracellular protein transport|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- U97399 // gb // 5 // Cross Hyb Matching Probes No No 1.28126777020487 -1.0621367065877 -1.1811403876261 -6.74125667576959 -22.0366761010047 Max fold change at or above threshold 2 22.0366761010047 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774754_at SPBC2G2.14.S1 --- 22.0237862290518 --- --- --- --- 8.32944965362549 9.02836894989014 7.14158773422241 1.15497136116028 0.0239257998764515 0.0805663987994194 0.0107421996071935 0.633789002895355 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G2.14 /DEF=hypothetical protein --- --- --- --- --- --- SPBC2G2.14 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- D89210 // gb // 10 // Negative Strand Matching Probes No No -3.92831306016666 1.08390942082955 -22.0237862290518 -1.16633022846038 -7.21182354275674 Max fold change at or above threshold 3 22.0237862290518 Max fold change at or above threshold PAAAPA No 4 0 PAPA 2 2 0 No No 1 < x = 2
1775994_at SPAC18B11.07c.S1 --- 22.012680616456 --- --- --- --- 25.977071762085 10.6514930725098 10.571192741394 9.78741264343262 0.0805663987994194 0.24609400331974 0.129638999700546 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18B11.07c /GEN=rhp6 /DEF=ubiquitin conjugating enzyme --- --- --- --- --- --- SPAC18B11.07c // |rhp6|ubc2|ubiquitin conjugating enzyme|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -22.012680616456 -2.43881975843637 -4.53438673723208 -2.45734539115586 -2.65413063783672 Max fold change at or above threshold 4 22.012680616456 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773535_at SPBC119.17.S1 --- 22.0064905551472 --- --- --- --- 3.58147382736206 0.428232103586197 7.15392684936523 5.74429607391357 0.567627012729645 0.753906011581421 0.274170011281967 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC119.17 /DEF=peptidase family M16 --- --- --- --- --- --- SPBC119.17 // ||SPBC577.01|peptidase family M16|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -22.0064905551472 -8.36339405049104 1.11418279712338 1.99748125889125 1.60389168001949 Max fold change at or above threshold 3 22.0064905551472 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776513_at SPBC23E6.07c.S1 --- 21.9648079601335 --- --- --- --- 5.6483006477356 0.280766606330872 0.424831181764603 3.94988799095154 0.5 0.753906011581421 0.919434010982513 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23E6.07c /GEN=rfc1 /DEF=replication factor C complex --- --- --- --- --- --- SPBC23E6.07c // |rfc1||DNA replication factor C complex subunit Rfc1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -21.9648079601335 -20.1174232276018 -7.86732339801353 -13.2954003617966 -1.42999008090225 Max fold change at or above threshold 2 21.9648079601335 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-DapX-M_at AFFX-DapX-M --- 21.9590621234343 --- --- --- --- 7.2546181678772 0.573019862174988 5.09311628341675 0.674992978572845 0.262808561325073 0.852061212062836 0.239062741398811 0.712256908416748 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=dapB, jojF /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2020-2580 of gb:L38424.1, not 100% identical /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. --- --- --- --- --- --- AFFX-DapX-M // --- // unknown // --- // --- /// AFFX-DapX-M // --- // unknown // --- // --- /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-DapX-M // --- // unknown // --- // --- /// AFFX-DapX-M // --- // unknown // --- // --- /// AFFX-DapX-M // --- // gb // --- // --- /// L38424 // Bacillus subtilis /REF=L38424 /DEF=B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1439-1846 of L38424 /LEN=1931 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-DapX-M // B. subtilis /GEN=dapB, jojF /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2020-2580 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // --- // --- /// L38424 // Bacillus subtilis /REF=L38424 /DEF=B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 /LEN=1931 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-DapX-M // B. subtilis /GEN=dapB, jojF /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2020-2580 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // --- // --- /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-DapX-M // --- // unknown // --- // --- /// AFFX-DapX-M // --- // affx // --- // --- /// AFFX-DapX-M // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-DapX-M // --- // affx // --- // --- /// AFFX-DapX-M // --- // affx // --- // --- /// AFFX-DapX-M // --- // affx // --- // --- /// AFFX-DapX-M // --- // affx // --- // --- /// AFFX-DapX-M // --- // affx // --- // --- /// AFFX-DapX-M // --- // affx // --- // --- /// AFFX-DapX-M // --- // affx // --- // --- /// AFFX-DapX-M // --- // affx // --- // --- /// AFFX-DapX-M // --- // affx // --- // --- /// AFFX-DapX-M // --- // affx // --- // --- /// AFFX-DapX-M // --- // affx // --- // --- 939026 // gb // 3 // Cross Hyb Matching Probes /// 939024 // gb // 2 // Cross Hyb Matching Probes /// BC037475 // gb // 1 // Cross Hyb Matching Probes /// NM_008594 // refseq // 1 // Cross Hyb Matching Probes /// ENSMUSESTT00000038567 // ensembl // 1 // Cross Hyb Matching Probes /// GENSCAN00000108918 // ensembl // 1 // Cross Hyb Matching Probes /// ENSMUST00000032825 // ensembl // 1 // Cross Hyb Matching Probes /// 50812173 // gb // 20 // Negative Strand Matching Probes AFFX_control No -3.63592818378193 -12.6603258399127 -21.9590621234343 -1.42439672769662 -10.7476942696735 Max fold change at or above threshold 2 21.9590621234343 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776922_at SPAC20H4.01.S1 --- 21.9578803031246 --- --- --- --- 3.5859968662262 2.57092189788818 3.94888854026794 3.48373103141785 0.567627012729645 0.366210997104645 0.0676269978284836 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20H4.01 /DEF=WD repeat protein --- --- --- --- --- --- SPAC20H4.01 // ||SPAC631.03|WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -21.9578803031246 -1.39482917360182 -1.19389633916244 1.1011968742805 -1.02935526132358 Max fold change at or above threshold 4 21.9578803031246 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777822_at SPAC1952.17c.S1 --- 21.9560360908508 --- --- --- --- 2.19560360908508 3.65248847007751 6.76103258132935 0.060940720140934 0.366210997104645 0.194580003619194 0.129638999700546 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1952.17c /DEF=TBC domain protein --- --- --- --- --- --- SPAC1952.17c // ||SPAC890.01c|GTPase activating protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.38347343677602 1.66354639560805 -12.2052500699954 3.07935027677728 -21.9560360908508 Max fold change at or above threshold 2 21.9560360908508 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775149_at SPCC1322.16.S1 --- 21.9489657328398 --- --- --- --- 0.25510710477829 2.37363219261169 5.59933710098267 3.38488578796387 0.567627012729645 0.390625 0.366210997104645 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1322.16 /DEF=prohibitin (predicted) --- --- --- --- --- --- SPCC1322.16 // |||prohibitin|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 8.1821070951851 9.30445349483538 8.30846822665583 21.9489657328398 13.2684888996158 Max fold change at or above threshold 2 21.9489657328398 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779262_at SPAC16E8.11c.S1 --- 21.9456876149207 --- --- --- --- 0.672408759593964 14.7564725875854 4.81570863723755 6.42935848236084 0.633789002895355 0.149657994508743 0.171387001872063 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16E8.11c /GEN=tfb1 /DEF=transcription initiation factor activity --- --- --- --- --- --- SPAC16E8.11c // |tfb1||transcription factor TFIIH complex subunit Tfb1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.17992877851871 21.9456876149207 6.47224896546424 7.16187671342285 9.56168162687712 Max fold change at or above threshold 3 21.9456876149207 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770235_at SPBC4.01.S1 --- 21.9335251498265 --- --- --- --- 0.488075941801071 10.705225944519 8.8934154510498 2.70837831497192 0.888427972793579 0.111571997404099 0.149657994508743 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4.01 /DEF=sequence orphan --- --- --- --- --- --- SPBC4.01 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.20010989728286 21.9335251498265 12.9640623428638 18.2213764075972 5.54909202239638 Max fold change at or above threshold 3 21.9335251498265 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774331_at SPBC646.14c.S1 --- 21.9322613261184 --- --- --- --- 0.310138523578644 1.83977138996124 6.75684404373169 6.80203914642334 0.805419981479645 0.88427734375 0.466064006090164 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC646.14c /GEN=orc5 /DEF=origin recognition complex (subunit 5) --- --- --- --- --- --- U92539 // Schizosaccharomyces pombe origin recognition complex subunit 5 homolog (orc5+) mRNA, complete cds. // gb // 11 // --- /// SPBC646.14c // |orc5||origin recognition complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.74888247966035 5.93209566077888 18.6273385094463 21.7865357897672 21.9322613261184 Max fold change at or above threshold 2 21.9322613261184 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769693_at SPAC607.10.S1 --- 21.9200856199636 --- --- --- --- 0.674879133701324 14.7934083938599 10.9898643493652 0.67438405752182 0.696289002895355 0.0461426004767418 0.00292969006113708 0.870360970497131 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC607.10 /GEN=spo3 /DEF=involved in sporulation (required) --- --- --- --- --- --- SPAC607.10 // |spo3||sporulation protein Spo3|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.82011205383784 21.9200856199636 9.07928493058083 16.2841963850507 -1.00073411607819 Max fold change at or above threshold 2 21.9200856199636 Max fold change at or above threshold AAPAPA No 3 0 APPA 2 2 0 No No 1 < x = 2
1770369_at SPAC222.04c.S1 --- 21.9145846366882 --- --- --- --- 2.19145846366882 0.0696081668138504 0.951957285404205 2.26727700233459 0.725830018520355 0.86572265625 0.725830018520355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC222.04c /DEF=hypothetical protein --- --- --- --- --- --- SPAC222.04c // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.10743559846515 -21.9145846366882 -2.38929982568897 -2.30205545697181 1.03459729669658 Max fold change at or above threshold 0 21.9145846366882 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773478_at SPBC1921.06c.S1 --- 21.9121703900004 --- --- --- --- 0.353133469820023 7.7379207611084 1.51913213729858 0.648782014846802 0.888427972793579 0.194580003619194 0.567627012729645 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1921.06c /GEN=pvg3 /DEF=beta-1,3-galactosyltransferase (pers. comm. Robert Trimble) --- --- --- --- --- --- SPBC1921.06c // |pvg3||beta-1,3-galactosyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 12.5500057261284 21.9121703900004 2.13684526870311 4.30186393284336 1.83721473690234 Max fold change at or above threshold 1 21.9121703900004 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774078_at SPBC19G7.05c.S1 --- 21.9092297740563 --- --- --- --- 5.58300828933716 3.20630621910095 1.21723937988281 5.013503074646 0.194580003619194 0.432372987270355 0.696289002895355 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19G7.05c /GEN=cps1 /DEF=1,3-beta-glucan synthase (subunit) --- --- --- --- --- --- SPBC19G7.05c // |cps1|drc1, bgs1|1,3-beta-glucan synthase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -21.9092297740563 -1.7412586034601 -1.88476159009425 -4.58661491043335 -1.11359426856069 Max fold change at or above threshold 3 21.9092297740563 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772628_at SPBC3D6.04c.S1 --- 21.8863863526081 --- --- --- --- 9.05587768554688 1.11714422702789 7.99592924118042 0.413767606019974 0.194580003619194 0.725830018520355 0.366210997104645 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3D6.04c /GEN=mad1 /DEF=coiled-coil (predicted) --- --- --- --- --- --- SPBC3D6.04c // |mad1||mitotic checkpoint protein Mad1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.20226862675363 -8.10627443301532 -13.6213378499787 -1.13256100853263 -21.8863863526081 Max fold change at or above threshold 2 21.8863863526081 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777780_at YCR105W.S1 NADPH-dependent cinnamyl alcohol dehydrogenase family member with broad substrate specificity; may be involved in fusel alcohol synthesis 21.852172334136 13.4894108772278 148.592041015625 ADH7 6066 // alcohol metabolism // inferred from direct assay 5625 // soluble fraction // inferred from direct assay 8106 // alcohol dehydrogenase (NADP+) activity // inferred from direct assay /// 8106 // alcohol dehydrogenase (NADP+) activity // inferred from sequence similarity 133.940231323242 6.12937831878662 20.8494434356689 163.243850708008 0.00122069998178631 0.423828125 0.366210997104645 0.000732421991415322 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR105W /GEN=ADH7 /DB_XREF=GI:6319949 /SEG=NC_001135:+309066,310151 /DEF=NADP(H)-dependent alcohol dehydrogenase /NOTE=Adh7p; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 12423374]; go_function: alcohol dehydrogenase (NADP+) activity [goid GO:0008106] [evidence IDA,ISS] [pmid 12423374]; go_process: alcohol metabolism [goid GO:0006066] [evidence IDA] [pmid 12423374] --- --- --- --- --- --- S0000702 // ADH7 SGDID:S0000702, Chr III from 309066-310151, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023397 // cdna:GeneFinder chromosome:SGD1:III:307797:310151:1 // ensembl // 11 // --- /// GENSCAN00000022532 // cdna:Genscan chromosome:SGD1:III:309429:310151:1 // ensembl // 11 // --- /// YCR105W // cdna:known chromosome:SGD1:III:309066:310151:1 gene:YCR105W // ensembl // 11 // --- --- No cerevisiae_gene 2.12472631573791 -21.852172334136 1.7980700866391 -6.42416339488943 1.21878131085235 Max fold change at or above threshold 4 21.852172334136 Max fold change at or above threshold 0.668411769960981 -0.946542431753963 -0.760547029554449 1.03867769134743 81.0407259464264 79.142091378648 0.976571846493162 PPAPAP Called_P_>2EXP 2 0 PAAP 2 2 0 Yes No 1 < x = 2
1772318_at SPAC18B11.08c.S1 --- 21.7995101408738 --- --- --- --- 5.49412631988525 4.76596641540527 3.36701941490173 0.278364956378937 0.601073980331421 0.725830018520355 0.696289002895355 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18B11.08c /DEF=conserved yeast protein --- --- --- --- --- --- SPAC18B11.08c // |||conserved yeast protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -10.1789691799988 -1.1527832638783 -21.7995101408738 -1.63174773972772 -19.7371335506978 Max fold change at or above threshold 3 21.7995101408738 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770415_at SPBC713.09.S1 --- 21.7923839888155 --- --- --- --- 0.33561372756958 7.31382322311401 2.62294793128967 0.918634235858917 0.665526986122131 0.432372987270355 0.567627012729645 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC713.09 /DEF=hypothetical protein --- --- --- --- --- --- SPBC713.09 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 9.9079334160234 21.7923839888155 12.3320830367431 7.81537736934756 2.73717717839317 Max fold change at or above threshold 2 21.7923839888155 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774059_at SPBP4H10.18c.S1 --- 21.7402885850749 --- --- --- --- 4.27594041824341 3.81616687774658 5.4634804725647 2.83262777328491 0.466064006090164 0.219482004642487 0.398925989866257 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP4H10.18c /DEF=sequence orphan --- --- --- --- --- --- SPBP4H10.18c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -21.7402885850749 -1.12048045990282 -15.4630297188312 1.27772605278937 -1.50953134703072 Max fold change at or above threshold 4 21.7402885850749 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778294_at SPCC5E4.04.S1 --- 21.6471638448785 --- --- --- --- 5.76420927047729 0.266280114650726 6.92520952224731 3.7254421710968 0.303710997104645 0.976073980331421 0.466064006090164 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC5E4.04 /GEN=cut1 /DEF=separin --- --- --- --- --- --- SPCC5E4.04 // |cut1||separin|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.44102650941318 -21.6471638448785 -13.8047483852033 1.20141535417813 -1.54725506550549 Max fold change at or above threshold 3 21.6471638448785 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772867_at SPCC645.05c.S1 --- 21.6343809849276 --- --- --- --- 3.82524800300598 1.22774314880371 1.89183437824249 0.498031616210938 0.567627012729645 0.665526986122131 0.567627012729645 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC645.05c /GEN=myo2 /DEF=myosin (type II) (heavy chain) --- --- --- --- --- --- SPCC645.05c // |myo2|rng5|myosin II heavy chain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.38386956570866 -3.11567448511786 -21.6343809849276 -2.02197826987351 -7.68073326771654 Max fold change at or above threshold 1 21.6343809849276 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775530_at SPAC3G6.03c.S1 --- 21.6038863562363 --- --- --- --- 6.21097040176392 1.13335478305817 5.58599281311035 3.98009634017944 0.219482004642487 0.753906011581421 0.303710997104645 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G6.03c /DEF=Maf-like protein --- --- --- --- --- --- SPAC3G6.03c // |||Maf-like protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -21.6038863562363 -5.48016428271883 -2.14493457424972 -1.11188299189837 -1.56050755331312 Max fold change at or above threshold 3 21.6038863562363 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778511_at SPBC6B1.02.S1 --- 21.5840833493009 --- --- --- --- 5.59963703155518 0.259433627128601 0.320634990930557 1.40822422504425 0.0676269978284836 0.932372987270355 0.780517995357513 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC6B1.02 /DEF=Ark1Prk1 family protein kinase --- --- --- --- --- --- SPBC6B1.02 // |||Ark1/Prk1 family protein kinase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -15.3461647215179 -21.5840833493009 -1.66380293624284 -17.4642106755215 -3.97638169544997 Max fold change at or above threshold 1 21.5840833493009 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779574_at SPBC32C12.02.S1 --- 21.5615633766559 --- --- --- --- 0.554997146129608 1.50993323326111 11.9666061401367 3.21742963790894 0.888427972793579 0.888427972793579 0.0805663987994194 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32C12.02 /GEN=ste11 /DEF=transcription factor --- --- --- --- --- --- SPBC32C12.02 // |ste11|aff1, stex|transcription factor Ste11|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.60032624850625 2.72061440998562 1.75038144483905 21.5615633766559 5.79720032858975 Max fold change at or above threshold 2 21.5615633766559 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772879_at SPCC965.09.S1 --- 21.5326516625344 --- --- --- --- 9.81557273864746 0.455845981836319 8.76616668701172 4.60522651672363 0.194580003619194 0.601073980331421 0.030273400247097 0.213134765625 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC965.09 /DEF=hydrolase --- --- --- --- --- --- SPCC965.09 // |||hydrolase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.16020009004413 -21.5326516625344 -1.34876803258103 -1.11971093969621 -2.13139846715525 Max fold change at or above threshold 3 21.5326516625344 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1772469_at SPBC56F2.03.S1 --- 21.489452669114 --- --- --- --- 0.282224535942078 6.06485080718994 2.24073362350464 0.195215851068497 0.780517995357513 0.466064006090164 0.424072265625 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC56F2.03 /DEF=actin-like protein --- --- --- --- --- --- SPBC56F2.03 // |||actin-like protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 12.4905563785153 21.489452669114 1.30918668063938 7.939542237265 -1.44570502035233 Max fold change at or above threshold 1 21.489452669114 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779607_at SPBC1105.14.S1 --- 21.3919792870323 --- --- --- --- 0.428654551506042 9.16976928710938 2.61037111282349 4.58102035522461 0.828612983226776 0.466064006090164 0.5 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1105.14 /DEF=zinc finger protein --- --- --- --- --- --- SPBC1105.14 // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 7.36566147034817 21.3919792870323 14.0608524075905 6.08968481415201 10.6869747192222 Max fold change at or above threshold 3 21.3919792870323 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770204_at SPBC1539.10.S1 --- 21.3738321908095 --- --- --- --- 0.3321313560009 7.09891986846924 1.35750615596771 0.374005556106567 0.953857004642487 0.000244140625 0.5 0.665526986122131 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1539.10 /DEF=involved in ribosome biogenesis and assembly (predicted) --- --- --- --- --- --- SPBC1539.10 // |||ribosome biogenesis protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 7.62916669321195 21.3738321908095 7.2053306395032 4.08725683811688 1.12607722622116 Max fold change at or above threshold 1 21.3738321908095 Max fold change at or above threshold AAPAAA No 3 0 APAA 3 1 0 No No x = 1
1779771_at SPBC16C6.02c.S1 --- 21.3477649816842 --- --- --- --- 0.372427970170975 5.19706916809082 7.95050477981567 3.05107665061951 0.805419981479645 0.24609400331974 0.0805663987994194 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16C6.02c /GEN=vps1302 /DEF=involved in intracellular protein transport (predicted) --- --- --- --- --- --- D89192 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1062. // gb // 9 // --- /// SPBC16C6.02c // |vps1302|vps13b|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.14003542881113 13.9545619135559 10.8678634339924 21.3477649816842 8.19239395263147 Max fold change at or above threshold 3 21.3477649816842 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773027_at SPCP20C8.03.S1 --- 21.307917922489 --- --- --- --- 4.0619649887085 0.34292995929718 5.64529323577881 0.190631717443466 0.665526986122131 0.828612983226776 0.129638999700546 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP20C8.03 /DEF=possible pseudogene --- --- --- --- --- --- SPCP20C8.03 // |||possible pseudogene|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.2043907190228 -11.8448822524381 -1.81364554323887 1.38979367165194 -21.307917922489 Max fold change at or above threshold 2 21.307917922489 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772711_at SPBC25B2.11.S1 --- 21.3033676066819 --- --- --- --- 0.285591453313828 0.650497436523438 4.10877132415771 0.624501287937164 0.976073980331421 0.932372987270355 0.665526986122131 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25B2.11 /GEN=pof2 /DEF=F-box protein --- --- --- --- --- --- SPBC25B2.11 // |pof2||F-box protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.0300420782566 2.27772025029274 21.3033676066819 14.386884749113 2.18669459709258 Max fold change at or above threshold 1 21.3033676066819 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779937_at SPBC21C3.08c.S1 --- 21.2891350947093 --- --- --- --- 0.500346541404724 1.08966290950775 5.16959285736084 10.6519451141357 0.567627012729645 0.366210997104645 0.194580003619194 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21C3.08c /DEF=ornithine aminotransferase --- --- --- --- --- --- D89154 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0637. // gb // 10 // --- /// SPBC21C3.08c // |||ornithine aminotransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 8.34107601452488 2.17781641189828 7.09241398633521 10.3320247659696 21.2891350947093 Max fold change at or above threshold 2 21.2891350947093 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769680_at SPAC890.04c.S1 --- 21.2793696422593 --- --- --- --- 5.05023574829102 3.82493853569031 7.77448606491089 4.45630168914795 0.303710997104645 0.326416015625 0.0107421996071935 0.077392578125 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC890.04c /DEF=WD repeat protein --- --- --- --- --- --- AF237708 // Schizosaccharomyces pombe ytm1p mRNA, complete cds. // gb // 10 // --- /// SPAC890.04c // |||microtubule asssociated protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -3.39528528061138 -1.32034428819379 -21.2793696422593 1.5394303261074 -1.13327958934859 Max fold change at or above threshold 4 21.2793696422593 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1777746_at SPBC12C2.03c.S1 --- 21.2489070719283 --- --- --- --- 5.11528396606445 2.16531205177307 0.890978753566742 3.29050421714783 0.194580003619194 0.5 0.828612983226776 0.326416015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12C2.03c /DEF=FAD binding (predicted) --- --- --- --- --- --- SPBC12C2.03c // |||FAD binding protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -11.8723464624422 -2.36237726653569 -21.2489070719283 -5.74119634793432 -1.55455931021366 Max fold change at or above threshold 2 21.2489070719283 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776700_at SPAC1A6.05c.S1 --- 21.2471576746536 --- --- --- --- 4.28242588043213 1.87168478965759 0.332694679498672 0.201552882790565 0.366210997104645 0.633789002895355 0.533936023712158 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1A6.05c /DEF=phospholipase (predicted) --- --- --- --- --- --- SPAC1A6.05c // |||phospholipase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -20.9445529893545 -2.2880059207061 -3.07057172653754 -12.871939782401 -21.2471576746536 Max fold change at or above threshold 1 21.2471576746536 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771730_at SPAPB17E12.12c.S1 --- 21.2428673084768 --- --- --- --- 5.7045955657959 4.80628824234009 3.54951167106628 2.16329765319824 0.466064006090164 0.24609400331974 0.5 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB17E12.12c /DEF=mitochondrial carrier --- --- --- --- --- --- SPAPB17E12.12c // |||mitochondrial transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -21.2428673084768 -1.18690250733244 -1.96655457810133 -1.60714940376072 -2.6369905950585 Max fold change at or above threshold 3 21.2428673084768 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778537_at YHR212W-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /// Hypothetical protein 21.2212114600352 13.550439119339 1.50523644685745 --- --- --- --- 0.993827939033508 21.0902328491211 6.01064538955688 2.0166449546814 0.753906011581421 0.030273400247097 0.219482004642487 0.466064006090164 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR212W-A /GEN=FLO5 /DB_XREF=GI:33438809 /SEG=NC_001140:+538740,538943 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Yhr212w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000087 // YAR061W SGDID:S0000087, Chr I from 218131-218334, Pseudogene ORF // sgd // 11 // --- /// S0028650 // YHR212W-A SGDID:S0028650, Chr VIII from 538741-538944, Uncharacterized ORF // sgd // 11 // --- /// YAR061W // cdna:pseudogene chromosome:SGD1:I:218131:218334:1 gene:YAR061W // ensembl // 11 // --- /// YHR212W-A // cdna:known chromosome:SGD1:VIII:538741:538944:1 gene:YHR212W-A // ensembl // 11 // --- --- No cerevisiae_gene 2.46164244863727 21.2212114600352 1.00549645171014 6.04797385290074 2.02916911014051 Max fold change at or above threshold 2 21.2212114600352 Max fold change at or above threshold -0.70280253905097 1.45878042970375 -0.163190244865984 -0.592787645786791 7.52783778309822 9.2970777437542 1.23502631321684 AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1775772_at SPAC323.07c.S1 --- 21.2187225544405 --- --- --- --- 8.70149612426758 10.3303775787354 5.83152294158936 0.414720118045807 0.0561522990465164 0.0107421996071935 0.0805663987994194 0.601073980331421 M P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC323.07c /DEF=MatE family transporter --- --- --- --- --- --- SPAC323.07c // |||MatE family transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -21.2187225544405 1.18719556168335 -2.21513033571952 -1.49214814233347 -20.9816108397868 Max fold change at or above threshold 3 21.2187225544405 Max fold change at or above threshold MAPAAA No 4 0 MPAA 2 1 1 No No x = 1
1774800_at SPBC24C6.02.S1 --- 21.1741137205011 --- --- --- --- 7.00166940689087 0.43525093793869 2.31412363052368 2.45292401313782 0.194580003619194 0.753906011581421 0.665526986122131 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC24C6.02 /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPBC24C6.02 // |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -13.9194729327006 -16.0865119327489 -21.1741137205011 -3.02562460991179 -2.85441757241156 Max fold change at or above threshold 1 21.1741137205011 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777304_at SPBC15D4.01c.S1 --- 21.149649725826 --- --- --- --- 3.4000129699707 1.16748917102814 0.4957195520401 0.160759776830673 0.725830018520355 0.725830018520355 0.850341975688934 0.989257991313934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC15D4.01c /DEF=kinesin-like protein --- --- --- --- --- --- SPBC15D4.01c // ||SPBC2D10.21c|kinesin-like protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.46956409101481 -2.91224368871577 -19.6045956880391 -6.85874292425663 -21.149649725826 Max fold change at or above threshold 1 21.149649725826 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772141_at SPCC553.09c.S1 --- 21.1197037965427 --- --- --- --- 5.01895141601563 10.485034942627 0.794568479061127 0.237643077969551 0.601073980331421 0.274170011281967 0.780517995357513 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC553.09c /DEF=DNA polymerase alpha (subunit) (predicted) --- --- --- --- --- --- SPCC553.09c // |spb70|pol12|DNA polymerase alpha B-subunit|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -8.15200337991822 2.08908875052444 -1.55542071783256 -6.31657503195456 -21.1197037965427 Max fold change at or above threshold 2 21.1197037965427 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770815_at SPCC1020.11c.S1 --- 21.0794900505281 --- --- --- --- 3.6008574962616 7.91766834259033 3.7252516746521 2.99769926071167 0.303710997104645 0.0375977009534836 0.533936023712158 0.432372987270355 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1020.11c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC1020.11c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.39209251933925 2.19882857091969 -21.0794900505281 1.03454570988151 -1.20120705350767 Max fold change at or above threshold 4 21.0794900505281 Max fold change at or above threshold APPAAA No 4 0 APAA 3 1 0 No No x = 1
1770803_at SPAC2F7.04.S1 --- 21.0583777544783 --- --- --- --- 4.35641479492188 1.63027775287628 0.660413682460785 0.346217006444931 0.5 0.904784977436066 0.888427972793579 0.96044921875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F7.04 /GEN=pmc2 /DEF=RNA polymerase II holoenzyme component (PMID 10625684) --- --- --- --- --- --- SPAC2F7.04 // |pmc2||RNA polymerase II holoenzyme mediator complex subunit |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -15.5048989180504 -2.67219177053474 -21.0583777544783 -6.59649385017179 -12.5829023815293 Max fold change at or above threshold 1 21.0583777544783 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772413_at SPBC1683.02.S1 --- 21.0233544743372 --- --- --- --- 0.467463552951813 7.41249799728394 9.82765197753906 7.20172595977783 0.633789002895355 0.398925989866257 0.111571997404099 0.0107421996071935 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1683.02 /DEF=adenine deaminase (predicted) --- --- --- --- --- --- SPBC1683.02 // |||adenine deaminase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 10.9593362623278 15.8568469145402 -1.44916611025359 21.0233544743372 15.4059624847805 Max fold change at or above threshold 3 21.0233544743372 Max fold change at or above threshold APAAAP No 4 0 AAAP 3 1 0 No No x = 1
1773789_at SPAC20G8.09c.S1 --- 20.9759913088945 --- --- --- --- 0.58639669418335 1.53234004974365 12.3002519607544 4.26487684249878 0.633789002895355 0.665526986122131 0.398925989866257 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20G8.09c /DEF=conserved protein --- --- --- --- --- --- SPAC20G8.09c // |||acetyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.97628079556793 2.61314578500085 3.01805754442116 20.9759913088945 7.2730233386433 Max fold change at or above threshold 2 20.9759913088945 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773336_at SPBC19C2.04c.S1 --- 20.9672115689103 --- --- --- --- 6.65980339050293 8.55050468444824 1.19065594673157 0.675189077854156 0.24609400331974 0.274170011281967 0.696289002895355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C2.04c /GEN=ubp11 /DEF=ubiquitin C-terminal hydrolase activity --- --- --- --- --- --- SPBC19C2.04c // |ubp11||ubiquitin C-terminal hydrolase activity|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.15446268742249 1.28389746409654 -20.9672115689103 -5.59339027263463 -9.86361244418926 Max fold change at or above threshold 2 20.9672115689103 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769430_at SPCC191.06.S1 --- 20.947658150913 --- --- --- --- 0.309724241495132 0.601086616516113 5.22043132781982 2.37317395210266 0.567627012729645 0.5 0.274170011281967 0.524169921875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC191.06 /DEF=sequence orphan --- --- --- --- --- --- SPCC191.06 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 15.6327578962035 1.94071543646208 20.947658150913 16.8550943982274 7.662215720173 Max fold change at or above threshold 1 20.947658150913 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778898_at SPAC8C9.10c.S1 --- 20.9005698087454 --- --- --- --- 0.262751191854477 5.49164962768555 2.36887907981873 3.35783982276917 0.753906011581421 0.334473013877869 0.149657994508743 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8C9.10c /DEF=sequence orphan --- --- --- --- --- --- SPAC8C9.10c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.225939312683 20.9005698087454 2.19844661132401 9.01567396554652 12.77954173707 Max fold change at or above threshold 2 20.9005698087454 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773674_at YGR273C.S1 Hypothetical protein 20.8438647493818 58.2081470489502 11.2207598686218 --- --- --- --- 11.7313890457153 73.2427825927734 43.173511505127 10.7101306915283 0.0375977009534836 0.00122069998178631 0.00195312988944352 0.014160200022161 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR273C /GEN=SLH1 /DB_XREF=GI:6321712 /SEG=NC_001139:-1038719,1039243 /DEF=Hypothetical ORF /NOTE=Ygr273cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003505 // YGR273C SGDID:S0003505, Chr VII from 1039244-1038720, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YGR273C // cdna:known chromosome:SGD1:VII:1038720:1039244:-1 gene:YGR273C // ensembl // 11 // --- --- No cerevisiae_gene -20.8438647493818 6.24331716451974 -1.26704665954515 3.68017046718737 -1.09535442503935 Max fold change at or above threshold 4 20.8438647493818 Max fold change at or above threshold -0.77178039006263 1.29379652569652 0.284058513748698 -0.806074649382589 34.714453458786 29.7792801022135 0.857835199323197 PAPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1778059_at SPBC28F2.09.S1 --- 20.8213195083214 --- --- --- --- 9.51399993896484 15.1022615432739 12.5999813079834 5.41984987258911 0.0676269978284836 0.0461426004767418 0.129638999700546 0.0952147990465164 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC28F2.09 /DEF=transcription factor TFIIA complex (large subunit) (predicted) --- --- --- --- --- --- SPBC28F2.09 // |||transcription factor TFIIA complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.56161234644255 1.58737246585657 -20.8213195083214 1.32436213882868 -1.75539916466725 Max fold change at or above threshold 4 20.8213195083214 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1776582_at SPCC11E10.01.S1 --- 20.8145557993337 --- --- --- --- 3.45134997367859 0.4156873524189 0.650083839893341 0.165814250707626 0.366210997104645 0.953857004642487 0.850341975688934 0.991943001747131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC11E10.01 /DEF=cystathionine beta-lyase (predicted) --- --- --- --- --- --- SPCC11E10.01 // ||SPCC61.06|cystathionine beta-lyase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.17719054370939 -8.30275435034302 -3.97292316052439 -5.30908440093642 -20.8145557993337 Max fold change at or above threshold 1 20.8145557993337 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769328_at SPCC895.03c.S1 --- 20.8020395697533 --- --- --- --- 6.3291916847229 1.23585641384125 2.760418176651 0.304258227348328 0.219482004642487 0.850341975688934 0.601073980331421 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC895.03c /DEF=involved in translational initiation (predicted) --- --- --- --- --- --- SPCC895.03c // |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -18.4355646329414 -5.12130018814299 -1.7227054932042 -2.29283799761151 -20.8020395697533 Max fold change at or above threshold 2 20.8020395697533 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775122_at SPBC1685.02c.S1 --- 20.7821486940112 --- --- --- --- 0.260563760995865 1.08776068687439 2.79800796508789 4.34228754043579 0.919434010982513 0.466064006090164 0.24609400331974 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1685.02c /GEN=rps1202 /DEF=40S ribosomal protein S12 --- --- --- --- --- --- SPBC1685.02c // |rps1202|rps12-2|40S ribosomal protein S12|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 20.7821486940112 4.17464302294766 10.3869092191769 10.7382851490707 16.664971075946 Max fold change at or above threshold 2 20.7821486940112 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770021_at SPAC1851.04c.S1 --- 20.7780533639094 --- --- --- --- 0.262387543916702 5.45190238952637 1.45890152454376 4.0179967880249 0.457763671875 0.24609400331974 0.567627012729645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1851.04c /DEF=DUF1339 --- --- --- --- --- --- SPAC1851.04c // ||SPAC27D7.01c|DUF1339|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.50483464548148 20.7780533639094 8.98026127109986 5.56010206417004 15.3132146749331 Max fold change at or above threshold 2 20.7780533639094 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777624_at SPAC24H6.11c.S1 --- 20.7471459542256 --- --- --- --- 7.20229005813599 8.7881031036377 4.67053842544556 0.347146064043045 0.149657994508743 0.018554700538516 0.0952147990465164 0.689208984375 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24H6.11c /DEF=sulfate transporter (predicted) --- --- --- --- --- --- SPAC24H6.11c // |||sulfate transporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -9.57659524622442 1.22018178005901 -2.5404952001244 -1.5420684730688 -20.7471459542256 Max fold change at or above threshold 3 20.7471459542256 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1772124_at SPAC9E9.11.S1 --- 20.7354148207367 --- --- --- --- 18.1264457702637 10.8757877349854 14.3988933563232 4.27004098892212 0.219482004642487 0.194580003619194 0.194580003619194 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9E9.11 /GEN=plr1 /DEF=pyridoxal reductase (PMID 10438489) --- --- --- --- --- --- D89205 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1115. // gb // 11 // --- /// AB019429 // Schizosaccharomyces pombe mRNA for pyridoxal reductase, complete cds. // gb // 11 // --- /// SPAC9E9.11 // |plr1|plr|pyridoxal reductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -20.7354148207367 -1.66667888450547 -2.34241137433329 -1.25887770134109 -4.24502851782678 Max fold change at or above threshold 4 20.7354148207367 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776140_at SPBC543.07.S1 --- 20.7019861251007 --- --- --- --- 4.37865400314331 1.4629340171814 0.395986497402191 1.05900418758392 0.432372987270355 0.780517995357513 0.989257991313934 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC543.07 /GEN=pek1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPBC543.07 // |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -14.2759953744932 -2.99306322207174 -20.7019861251007 -11.0575841142786 -4.13468997996414 Max fold change at or above threshold 1 20.7019861251007 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776867_at SPAC27F1.02c.S1 --- 20.6392922390591 --- --- --- --- 9.3931245803833 0.455108851194382 11.7787342071533 4.55672121047974 0.0676269978284836 0.432372987270355 0.0239257998764515 0.0952147990465164 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27F1.02c /GEN=cdc8 /DEF=tropomyosin --- --- --- --- --- --- SPAC27F1.02c // |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.02570413635753 -20.6392922390591 -1.98729807781357 1.25397402178101 -2.06137793964235 Max fold change at or above threshold 3 20.6392922390591 Max fold change at or above threshold APAAPA No 4 0 AAPA 3 1 0 No No x = 1
1778054_at SPCC553.01c.S1 --- 20.6206406394367 --- --- --- --- 8.99253368377686 0.734454572200775 6.46205377578735 2.42227554321289 0.303710997104645 0.901123046875 0.398925989866257 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC553.01c /DEF=sequence orphan --- --- --- --- --- --- SPCC553.01c // ||SPCC736.01c|sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -20.6206406394367 -12.2438255872395 -4.30614000296381 -1.39159066076964 -3.7124321834374 Max fold change at or above threshold 2 20.6206406394367 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773768_at SPBC23G7.13c.S1 --- 20.5980456297554 --- --- --- --- 4.37482976913452 0.79220312833786 2.32197022438049 1.80181288719177 0.398925989866257 0.781005859375 0.533936023712158 0.357666015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23G7.13c /DEF=urea transporter (predicted) --- --- --- --- --- --- SPBC23G7.13c // |||urea transporter |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -20.5980456297554 -5.52235861314188 1.07844390917921 -1.88410244162443 -2.42801558376738 Max fold change at or above threshold 1 20.5980456297554 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774107_at SPAC15A10.10.S1 --- 20.578165331933 --- --- --- --- 5.23671627044678 3.80575728416443 1.15420126914978 0.264862865209579 0.432372987270355 0.665526986122131 0.953857004642487 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15A10.10 /GEN=mde6 /DEF=involved in sporulation (predicted) --- --- --- --- --- --- SPAC15A10.10 // |mde6||kelch repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- AB054300 // gb // 6 // Negative Strand Matching Probes /// AB084830 // gb // 6 // Negative Strand Matching Probes /// SPNCRNA.18 // sanger // 6 // Negative Strand Matching Probes No No 1.18121476681791 -1.37599848845761 -20.578165331933 -4.5370910693109 -19.7714249836537 Max fold change at or above threshold 2 20.578165331933 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775058_at SPAC2F7.05c.S1 --- 20.5607939490093 --- --- --- --- 11.826244354248 5.77432823181152 13.5650119781494 7.25754022598267 0.129638999700546 0.334473013877869 0.0952147990465164 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F7.05c /DEF=translation initiation factor --- --- --- --- --- --- SPAC2F7.05c // |||translation initiation factor eIF5 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -20.5607939490093 -2.0480727591992 -2.17462892932978 1.1470261878427 -1.6295113752052 Max fold change at or above threshold 4 20.5607939490093 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770633_at SPBC17D1.07c.S1 --- 20.5480408668518 --- --- --- --- 2.05480408668518 0.862798929214478 0.588404178619385 0.0986103042960167 0.303710997104645 0.780517995357513 0.696289002895355 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17D1.07c /DEF=calcium binding protein --- --- --- --- --- --- SPBC17D1.07c // |||calcium binding protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.35220482488265 -2.38155613910642 -1.58851001496173 -3.49216433422773 -20.5480408668518 Max fold change at or above threshold 0 20.5480408668518 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769424_at SPBC2A9.08c.S1 --- 20.528889621709 --- --- --- --- 0.540793895721436 7.41825532913208 11.1018981933594 8.0244255065918 0.753906011581421 0.303710997104645 0.194580003619194 0.14453125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2A9.08c /GEN=sec22 /DEF=SNARE (R-type) --- --- --- --- --- --- SPBC2A9.08c // |sec22||SNARE |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 10.0691668569746 13.7173429430743 18.5572867941597 20.528889621709 14.838232402544 Max fold change at or above threshold 3 20.528889621709 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771035_at SPBC725.10.S1 --- 20.4971208398006 --- --- --- --- 10.2712001800537 5.89135885238647 3.26151251792908 0.501104533672333 0.219482004642487 0.533936023712158 0.432372987270355 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC725.10 /DEF=similar to peripheral-type benzodiazepine receptor --- --- --- --- --- --- SPBC725.10 // |||similar to peripheral-type benzodiazepine receptor|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.62859043395725 -1.74343482334183 -2.61602633822383 -3.14921378458345 -20.4971208398006 Max fold change at or above threshold 3 20.4971208398006 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769777_at YPL130W.S1 Meiosis-specific protein of unknown function, involved in completion of nuclear divisions; identified as a weak high-copy suppressor of the spo1-1 ts mutation; putative GPI-dependent cell-wall protein 20.4921231021708 25.3950128555298 393.927291870117 SPO19 7126 // meiosis // inferred from expression pattern 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 356.392364501953 33.3983497619629 17.3916759490967 431.462219238281 0.000244141003349796 0.000244141003349796 0.0107421996071935 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL130W /GEN=SPO19 /DB_XREF=GI:6325127 /SEG=NC_001148:+304386,305057 /DEF=Meiosis-specific protein of unknown function, involved in completion of nuclear divisions; identified as a weak high-copy suppressor of the spo1-1 ts mutation; putative GPI-dependent cell-wall protein /NOTE=Spo19p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiosis [goid GO:0007126] [evidence IEP] [pmid 11101837] --- --- --- --- --- S0006051 // span:198-220 // numtm:1 S0006051 // SPO19 SGDID:S0006051, Chr XVI from 304386-305057, Verified ORF // sgd // 11 // --- /// GENSCAN00000017090 // cdna:Genscan chromosome:SGD1:XVI:304386:305057:1 // ensembl // 11 // --- /// GENEFINDER00000020793 // cdna:GeneFinder chromosome:SGD1:XVI:304386:305057:1 // ensembl // 11 // --- /// YPL130W // cdna:known chromosome:SGD1:XVI:304386:305057:1 gene:YPL130W // ensembl // 11 // --- --- No cerevisiae_gene 3.07062324754576 -10.6709573090298 -1.85441180965795 -20.4921231021708 1.21063822408551 Max fold change at or above threshold 4 20.4921231021708 Max fold change at or above threshold 0.68225704811008 -0.8195702716614 -0.893996604453308 1.03130982800463 209.661152362823 215.067345285167 1.02578538208637 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1772419_at SPAC22F3.10c.S1 --- 20.4134678170624 --- --- --- --- 0.433451324701309 8.84824466705322 0.667862474918365 0.553479731082916 0.953857004642487 0.432372987270355 0.904784977436066 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F3.10c /GEN=gcs1 /DEF=glutamate--cysteine ligase (PMID 8619315) --- --- --- --- --- --- SPAC22F3.10c // |gcs1||glutamate--cysteine ligase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.29799536076651 20.4134678170624 2.05658525490516 1.54080155454269 1.27691323002489 Max fold change at or above threshold 1 20.4134678170624 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773775_at SPAC18B11.03c.S1 --- 20.4063294928192 --- --- --- --- 0.262750416994095 5.19374132156372 3.68433284759521 5.36177158355713 0.79931640625 0.188720703125 0.334473013877869 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18B11.03c /DEF=N-acetyltransferase (predicted) --- --- --- --- --- --- SPAC18B11.03c // |||N-acetyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 13.595496867727 19.7668242775061 3.72034565875278 14.0221769759476 20.4063294928192 Max fold change at or above threshold 3 20.4063294928192 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772543_at SPBP23A10.10.S1 --- 20.3950573098549 --- --- --- --- 6.53501033782959 0.320421278476715 1.44754922389984 0.763530552387238 0.533936023712158 0.943848013877869 0.850341975688934 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP23A10.10 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPBP23A10.10 // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.24569489023633 -20.3950573098549 -12.3461289946982 -4.5145341035268 -8.55893757937698 Max fold change at or above threshold 1 20.3950573098549 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780063_at SPBC2G5.02c.S1 --- 20.3899786255458 --- --- --- --- 7.62455368041992 6.33263683319092 7.18611621856689 0.373936325311661 0.129638999700546 0.334473013877869 0.24609400331974 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G5.02c /DEF=protein kinase CK2 complex (regulatory subunit) (predicted) --- --- --- --- --- --- SPBC2G5.02c // |||CK2 family |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -10.8519031986102 -1.20400930627472 -15.499131921621 -1.06101174104591 -20.3899786255458 Max fold change at or above threshold 3 20.3899786255458 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777648_at SPCC1840.07c.S1 --- 20.3813409779075 --- --- --- --- 4.97344875335693 5.55375146865845 4.42307710647583 0.244019702076912 0.398925989866257 0.398925989866257 0.00415039015933871 0.888427972793579 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1840.07c /DEF=calcineurin-like phosphoesterase (predicted) --- --- --- --- --- --- SPCC1840.07c // |||calcineurin-like phosphoesterase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -7.89289952728091 1.11668014371513 1.70526088107874 -1.12443184543975 -20.3813409779075 Max fold change at or above threshold 3 20.3813409779075 Max fold change at or above threshold AAAPPA No 3 0 AAPA 3 1 0 No No x = 1
1770784_at SPBC3D6.05.S1 --- 20.3809315365855 --- --- --- --- 5.69473457336426 1.2317830324173 1.1979444026947 0.279414832592011 0.466064006090164 0.828612983226776 0.904784977436066 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3D6.05 /GEN=ptp4 /DEF=involved in tRNA splicing (predicted) (PMID 11955632) --- --- --- --- --- --- SPBC3D6.05 // |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.19651147333838 -4.62316367695754 -1.04608641383252 -4.75375531665268 -20.3809315365855 Max fold change at or above threshold 1 20.3809315365855 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774686_at SPBC405.06.S1 --- 20.3719147188923 --- --- --- --- 4.05292701721191 0.274514734745026 5.32753705978394 0.23961278796196 0.696289002895355 0.943848013877869 0.725830018520355 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC405.06 /DEF=DNAJ domain protein --- --- --- --- --- --- SPBC405.06 // |||DNAJ domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -20.3719147188923 -14.7639689395046 -5.21811845834251 1.31449123982717 -16.9144854566583 Max fold change at or above threshold 2 20.3719147188923 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773551_at SPBP8B7.17c.S1 --- 20.3535307789085 --- --- --- --- 0.303492903709412 6.17715215682983 3.94518828392029 0.431097596883774 0.888427972793579 0.303710997104645 0.219482004642487 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.17c /DEF=TENATHI domain --- --- --- --- --- --- SPBP8B7.17c // |||TENA/THI domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 13.2106180841775 20.3535307789085 2.95099598056941 12.999276871718 1.42045363042999 Max fold change at or above threshold 2 20.3535307789085 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778938_at SPBC651.03c.S1 --- 20.3454147738194 --- --- --- --- 4.1986255645752 6.29673528671265 1.06015503406525 0.224443525075912 0.274170011281967 0.0952147990465164 0.5 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC651.03c /GEN=gyp10 /DEF=TBC domain protein --- --- --- --- --- --- SPBC651.03c // |gyp10||GTPase activating protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.02710500181133 1.49971346333898 -20.3454147738194 -3.96038827309553 -18.7068241917655 Max fold change at or above threshold 2 20.3454147738194 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779528_at SPAC3G9.09c.S1 --- 20.3241652625452 --- --- --- --- 9.04204559326172 6.61986637115479 8.14859199523926 0.658340096473694 0.219482004642487 0.334473013877869 0.171387001872063 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G9.09c /GEN=tif211 /DEF=translation initiation factor --- --- --- --- --- --- SPAC3G9.09c // |tif211||translation initiation factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -20.3241652625452 -1.36589548584565 -13.3765065178354 -1.10964515078733 -13.7346117025139 Max fold change at or above threshold 3 20.3241652625452 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771983_at SPBC543.02c.S1 --- 20.3197510802157 --- --- --- --- 5.69940423965454 0.400558978319168 4.71547842025757 0.280485928058624 0.149657994508743 0.696289002895355 0.219482004642487 0.72607421875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC543.02c /DEF=DNAJ domain protein --- --- --- --- --- --- SPBC543.02c // |||DNAJ domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -11.212033653876 -14.2286268643146 -14.6921604943393 -1.20865874715279 -20.3197510802157 Max fold change at or above threshold 2 20.3197510802157 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772593_at SPAC11E3.12.S1 --- 20.2691871255876 --- --- --- --- 0.261796474456787 1.12407052516937 0.69209748506546 0.445655256509781 0.981445014476776 0.696289002895355 0.828612983226776 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11E3.12 /DEF=NADH ubiquinone dehydrogenase subunit E (predicted) --- --- --- --- --- --- SPAC11E3.12 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.16608805032997 4.29368091186772 20.2691871255876 2.64364707928754 1.70229663113107 Max fold change at or above threshold 0 20.2691871255876 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779463_at SPBC1709.20.S1 --- 20.2637001453764 --- --- --- --- 4.15615797042847 3.11948990821838 0.86213356256485 2.33463311195374 0.5 0.601073980331421 0.567627012729645 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1709.20 /DEF=RNase P and RNase MRP subunit --- --- --- --- --- --- SPBC1709.20 // |||RNase P and RNase MRP subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -20.2637001453764 -1.3323197358257 -6.14520479107122 -4.82078201208625 -1.78021889141733 Max fold change at or above threshold 2 20.2637001453764 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771357_at SPAC16E8.13.S1 --- 20.2494486547384 --- --- --- --- 0.342620193958282 6.93787002563477 0.797567784786224 3.86632418632507 0.919434010982513 0.219482004642487 0.633789002895355 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16E8.13 /DEF=zinc finger protein --- --- --- --- --- --- SPAC16E8.13 // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.17251344026396 20.2494486547384 -1.87169056513892 2.32784815037299 11.2845776591786 Max fold change at or above threshold 2 20.2494486547384 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Bs-lys-M_at AFFX-r2-Bs-lys-M --- 20.2266393336796 --- --- --- --- 4.49386358261108 5.00680732727051 0.879448235034943 0.222175493836403 0.4912109375 0.366210997104645 0.601073980331421 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 673-1002 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). --- --- --- --- --- --- X17013 // Bacillus subtilis /REF=X17013 /DEF=B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 1008-1263 of X17013 /LEN=1108 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-r2-Bs-lys-M // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 673-1002 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // --- // --- /// AFFX-r2-Bs-lys-M // --- // unknown // --- // --- /// AFFX-r2-Bs-lys-M // --- // unknown // --- // --- /// AFFX-r2-Bs-lys-M // --- // unknown // --- // --- /// AFFX-r2-Bs-lys-M // --- // unknown // --- // --- /// AFFX-r2-Bs-lys-M // --- // gb // --- // --- /// AFFX-r2-Bs-lys-M // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 673-1002 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-lys-M // --- // unknown // --- // --- /// AFFX-r2-Bs-lys-M // --- // affx // --- // --- /// AFFX-r2-Bs-lys-M // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-lys-M // --- // affx // --- // --- /// AFFX-r2-Bs-lys-M // --- // affx // --- // --- /// AFFX-r2-Bs-lys-M // --- // affx // --- // --- /// AFFX-r2-Bs-lys-M // --- // affx // --- // --- /// AFFX-r2-Bs-lys-M // --- // affx // --- // --- /// AFFX-r2-Bs-lys-M // --- // affx // --- // --- /// AFFX-r2-Bs-lys-M // --- // affx // --- // --- /// AFFX-r2-Bs-lys-M // --- // affx // --- // --- /// AFFX-r2-Bs-lys-M // --- // affx // --- // --- /// AFFX-r2-Bs-lys-M // --- // affx // --- // --- /// AFFX-r2-Bs-lys-M // --- // affx // --- // --- 50812173 // gb // 11 // Negative Strand Matching Probes AFFX_control No -1.11684095787242 1.11414314992655 1.29336402698764 -5.10986707754611 -20.2266393336796 Max fold change at or above threshold 2 20.2266393336796 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774957_at SPAC24C9.05c.S1 --- 20.2215234593477 --- --- --- --- 6.18702793121338 9.24130916595459 5.69564628601074 2.04533123970032 0.149657994508743 0.2119140625 0.0952147990465164 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24C9.05c /DEF=conserved protein --- --- --- --- --- --- SPAC24C9.05c // |||conserved protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -20.2215234593477 1.49365887283819 -1.71159095535044 -1.08627320246511 -3.0249515634054 Max fold change at or above threshold 3 20.2215234593477 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770148_at SPBC20F10.02c.S1 --- 20.2211338961151 --- --- --- --- 0.207659214735031 3.60881423950195 3.98398351669312 1.37867319583893 0.870360970497131 0.696289002895355 0.71875 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC20F10.02c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC20F10.02c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.09361302788062 17.378541299536 20.2211338961151 19.1851997599846 6.63911398103902 Max fold change at or above threshold 2 20.2211338961151 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773762_at SPBC36.12c.S1 --- 20.2010371064008 --- --- --- --- 3.60100102424622 4.73439025878906 0.205151289701462 1.55477809906006 0.219482004642487 0.149657994508743 0.904784977436066 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC36.12c /GEN=git7 /DEF=involved in cAMP-mediated signaling --- --- --- --- --- --- SPBC36.12c // |git7||Sgtlp family protein Git7|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -12.874244062834 1.31474282481774 -20.2010371064008 -17.5529046367996 -2.31608679490868 Max fold change at or above threshold 2 20.2010371064008 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770564_at SPCC794.10.S1 --- 20.1640852874193 --- --- --- --- 5.20711898803711 0.780117630958557 3.29835271835327 1.87214255332947 0.432372987270355 0.828612983226776 0.111571997404099 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC794.10 /DEF=UTP-glucose-1-phosphate uridylyltransferase activity (predicted) --- --- --- --- --- --- SPCC794.10 // |||UTP-glucose-1-phosphate uridylyltransferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -2.30346341535957 -6.67478695698615 -20.1640852874193 -1.57870289586155 -2.78136885397783 Max fold change at or above threshold 2 20.1640852874193 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779059_at SPBC3E7.08c.S1 --- 20.1564883260648 --- --- --- --- 3.93834233283997 0.601183116436005 0.418177247047424 3.10759973526001 0.398925989866257 0.780517995357513 0.780517995357513 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3E7.08c /GEN=rad13 /DEF=DNA repair nuclease --- --- --- --- --- --- X66795 // S.pombe mRNA rad13. // gb // 10 // --- /// SPBC3E7.08c // |rad13||DNA repair nuclease Rad13|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -20.1564883260648 -6.55098625554831 -3.98102491007745 -9.41787809032405 -1.26732612574072 Max fold change at or above threshold 2 20.1564883260648 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774818_at SPAC3G9.07c.S1 --- 20.1411726903416 --- --- --- --- 4.43856143951416 5.04319953918457 5.24847030639648 4.56786584854126 0.303710997104645 0.398925989866257 0.129638999700546 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G9.07c /GEN=hda1 /DEF=transcriptional regulator --- --- --- --- --- --- SPAC3G9.07c // |hda1|phd1|histone deacetylase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -20.1411726903416 1.13622388873288 -2.53072016330002 1.18247102758838 1.02913205343424 Max fold change at or above threshold 4 20.1411726903416 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1777785_at SPAC15A10.11.S1 --- 20.1312719884578 --- --- --- --- 0.715698957443237 14.4079303741455 6.9023904800415 0.362834572792053 0.466064006090164 0.0676269978284836 0.111571997404099 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15A10.11 /GEN=ubr11 /DEF=ubiquitin-protein ligase (E3) --- --- --- --- --- --- SPAC15A10.11 // |ubr11||ubiquitin-protein ligase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.01273419237879 20.1312719884578 -1.18784279574822 9.64426510372406 -1.97252139435295 Max fold change at or above threshold 2 20.1312719884578 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769380_at SPBC20F10.07.S1 --- 20.1177169158347 --- --- --- --- 0.207412078976631 0.632158696651459 2.01509284973145 0.725650489330292 0.904784977436066 0.805419981479645 0.533936023712158 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC20F10.07 /DEF=hypothetical protein --- --- --- --- --- --- SPBC20F10.07 // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.17799485300473 3.04783935328416 20.1177169158347 9.71540741346353 3.49859320108377 Max fold change at or above threshold 0 20.1177169158347 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776977_at SPAC22A12.17c.S1 --- 20.0739465179014 --- --- --- --- 0.501479625701904 10.0666751861572 9.66239833831787 2.53299784660339 0.601073980331421 0.018554700538516 0.030273400247097 0.633789002895355 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22A12.17c /DEF=short chain dehydrogenase (predicted) --- --- --- --- --- --- SPAC22A12.17c // |||short chain dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 15.036578651851 20.0739465179014 16.1955235390266 19.267778476132 5.05104837122354 Max fold change at or above threshold 3 20.0739465179014 Max fold change at or above threshold AAPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1775281_at SPBC14C8.08c.S1 --- 20.0573667002983 --- --- --- --- 0.172974586486816 0.50196373462677 0.766059756278992 0.698391258716583 0.953857004642487 0.746826171875 0.805419981479645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14C8.08c /DEF=dubious --- --- --- --- --- --- SPBC14C8.08c // |||dubious|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 20.0573667002983 2.90195077104594 10.8260570524377 4.42874165412373 4.03753680179957 Max fold change at or above threshold 0 20.0573667002983 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776480_at SPBC428.15.S1 --- 20.0453236857318 --- --- --- --- 0.302162557840347 2.89494299888611 0.297786712646484 6.05694627761841 0.919434010982513 0.725830018520355 0.753906011581421 0.296630859375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC428.15 /DEF=GTP binding --- --- --- --- --- --- SPBC428.15 // |||GTP binding|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.5395663017649 9.58074693164234 1.36895763669663 -1.01469456160409 20.0453236857318 Max fold change at or above threshold 2 20.0453236857318 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779862_at SPAC4F8.01.S1 --- 20.0273018216686 --- --- --- --- 0.257470518350601 5.15643978118896 2.78211426734924 3.3537712097168 0.9013671875 0.696289002895355 0.79931640625 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F8.01 /DEF=involved in intracellular protein transport --- --- --- --- --- --- SPAC4F8.01 // |did4|SPAC644.03c|SNF7 family class E vps |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.60929809288439 20.0273018216686 2.54384550929435 10.8055644008173 13.0258455655491 Max fold change at or above threshold 3 20.0273018216686 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770813_at SPBP8B7.12c.S1 --- 20.0093130642252 --- --- --- --- 0.242000997066498 4.8422737121582 0.275196880102158 0.435516715049744 0.974853515625 0.194580003619194 0.398925989866257 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.12c /DEF=sequence orphan --- --- --- --- --- --- SPBP8B7.12c // |fta3|sma3|kinetochore associated protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.14740020142346 20.0093130642252 -1.98866319304348 1.13717250522955 1.7996484325644 Max fold change at or above threshold 1 20.0093130642252 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771008_at SPAC144.17c.S1 --- 20.007548545378 --- --- --- --- 0.235377117991447 4.70931911468506 0.357181161642075 0.314381927251816 0.998778998851776 0.457763671875 0.991455078125 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC144.17c /DEF=6-phosphofructo-2-kinase --- --- --- --- --- --- SPAC144.17c // |||6-phosphofructo-2-kinase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.14331024441736 20.007548545378 15.1137877565754 1.51748464205026 1.33565203760902 Max fold change at or above threshold 1 20.007548545378 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776957_at YLR162W.S1 Protein of unknown function; overexpression confers resistance to the antimicrobial peptide MiAMP1 19.9656721833169 8.31681180000305 5.85178405046463 --- --- --- --- 11.1453428268433 11.8912706375122 4.7423529624939 0.558225274085999 0.219482004642487 0.24609400331974 0.274170011281967 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR162W /GEN=ASP3-4 /DB_XREF=GI:6323191 /SEG=NC_001144:+489574,489930 /DEF=Hypothetical ORF /NOTE=Ylr162wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004152 // YLR162W SGDID:S0004152, Chr XII from 489574-489930, Uncharacterized ORF // sgd // 11 // --- /// YLR162W // cdna:known chromosome:SGD1:XII:489574:489930:1 gene:YLR162W // ensembl // 11 // --- --- No cerevisiae_gene -1.98309537608767 1.06692730966269 -2.5562119448216 -2.35017151084895 -19.9656721833169 Max fold change at or above threshold 3 19.9656721833169 Max fold change at or above threshold 0.75121540841696 0.889197745110447 -0.433214895254545 -1.20719825827286 7.08429792523384 5.40596592682688 0.763091273670345 AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771107_at SPBC11G11.07.S1 --- 19.9013396700761 --- --- --- --- 8.43879127502441 4.4988112449646 0.621837496757507 4.8032431602478 0.334473013877869 0.633789002895355 0.828612983226776 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11G11.07 /DEF=karyopherin --- --- --- --- --- --- SPBC11G11.07 // ||SPBC18H10.01|karyopherin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -19.9013396700761 -1.87578247130722 -1.09423702169946 -13.5707340246084 -1.75689445515997 Max fold change at or above threshold 3 19.9013396700761 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778326_at SPCC24B10.16c.S1 --- 19.8797672414446 --- --- --- --- 9.46592903137207 0.476158946752548 6.27819395065308 7.14155435562134 0.274170011281967 0.79931640625 0.303710997104645 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC24B10.16c /DEF=sequence orphan --- --- --- --- --- --- SPCC24B10.16c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.38411957028304 -19.8797672414446 -1.18267436612227 -1.50774714922393 -1.32547181747922 Max fold change at or above threshold 3 19.8797672414446 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1770254_at SPBC21.06c.S1 --- 19.8788964023583 --- --- --- --- 4.47841882705688 0.75520396232605 1.31298422813416 0.30905482172966 0.171387001872063 0.870360970497131 0.633789002895355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21.06c /GEN=cdc7 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPBC21.06c // |cdc7||serine/threonine protein kinase Cdc7|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -19.8788964023583 -5.93007856217177 -1.2239883297932 -3.4108702382671 -14.4906939228222 Max fold change at or above threshold 1 19.8788964023583 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769653_s_at YCL068C.S1 GTP/GDP exchange factor for Rsr1p (Bud1p) required for both axial and bipolar budding patterns; mutants exhibit random budding in all cell types /// Hypothetical protein 19.8761723124168 27.9681205749512 15.5897340774536 BUD5 282 // bud site selection // traceable author statement /// 7120 // axial bud site selection // traceable author statement /// 7121 // bipolar bud site selection // traceable author statement /// 7124 // pseudohyphal growth // traceable author statement /// 7264 // small GTPase mediated signal transduction // traceable author statement 131 // incipient bud site // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 4871 // signal transducer activity // traceable author statement /// 5085 // guanyl-nucleotide exchange factor activity // traceable author statement /// 5088 // Ras guanyl-nucleotide exchange factor activity // traceable author statement 2.51920127868652 18.496337890625 37.4399032592773 28.6602668762207 0.567627012729645 0.432372987270355 0.171387001872063 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL068C /DB_XREF=GI:10383751 /SEG=NC_001135:-11503,12285 /DEF=Hypothetical ORF /NOTE=Ycl068cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000573 // YCL068C SGDID:S0000573, Chr III from 12285-11503, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0000634 // BUD5 SGDID:S0000634, Chr III from 199544-197616, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022416 // cdna:Genscan chromosome:SGD1:III:11503:12075:-1 // ensembl // 10 // --- /// GENEFINDER00000023328 // cdna:GeneFinder chromosome:SGD1:III:11503:12285:-1 // ensembl // 11 // --- /// GENSCAN00000022487 // cdna:Genscan chromosome:SGD1:III:197616:199232:-1 // ensembl // 10 // --- /// GENEFINDER00000023294 // cdna:GeneFinder chromosome:SGD1:III:197616:199544:-1 // ensembl // 11 // --- /// YCL068C // cdna:known chromosome:SGD1:III:11503:12285:-1 gene:YCL068C // ensembl // 11 // --- /// YCR038C // cdna:known chromosome:SGD1:III:197616:199544:-1 gene:YCR038C // ensembl // 11 // --- --- No cerevisiae_gene 19.8761723124168 7.34214373702951 19.0595213308429 14.8618149633514 11.3767276631281 Max fold change at or above threshold 4 19.8761723124168 Max fold change at or above threshold -1.28461807312884 -0.218947751655502 1.0445824970111 0.458983327773241 21.7789273262024 14.9925697375614 0.688397987329877 APAPAA No 4 0 AAAA 4 0 0 No No x = 1
1769864_at SPBC3B8.01c.S1 --- 19.8170095019784 --- --- --- --- 7.26097774505615 1.08119893074036 0.992465734481812 0.36640128493309 0.2392578125 0.828612983226776 0.696289002895355 0.55908203125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B8.01c /DEF=electron carrier activity --- --- --- --- --- --- SPBC3B8.01c // |||NADPH-adrenodoxin reductase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.61775590791563 -6.71567233245797 -3.71081751552041 -7.31609917882683 -19.8170095019784 Max fold change at or above threshold 1 19.8170095019784 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780081_at SPAC23C4.07.S1 --- 19.8146772439909 --- --- --- --- 3.62160205841064 1.21920692920685 0.18277370929718 1.62666189670563 0.358154296875 0.633789002895355 0.773681640625 0.212890625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C4.07 /DEF=hypothetical protein --- --- --- --- --- --- SPAC23C4.07 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.8969566853871 -2.97045724696354 -1.14756171559876 -19.8146772439909 -2.22640123663389 Max fold change at or above threshold 1 19.8146772439909 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779694_at SPBC530.05.S1 --- 19.7483111821756 --- --- --- --- 8.59067726135254 0.695219993591309 0.435008198022842 2.95781493186951 0.366210997104645 0.805419981479645 0.904784977436066 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC530.05 /DEF=transcriptional regulator --- --- --- --- --- --- SPBC530.05 // |||transcription factor|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.66417708142157 -12.3567753237008 -8.75312103383862 -19.7483111821756 -2.90439985571469 Max fold change at or above threshold 2 19.7483111821756 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772666_at SPCC74.02c.S1 --- 19.7421915549271 --- --- --- --- 0.323499739170074 3.28417444229126 6.38659381866455 1.19400382041931 0.962401986122131 0.780517995357513 0.5 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC74.02c /DEF=CPF complex (PMID 14617822) --- --- --- --- --- --- SPCC74.02c // |||involved in polyadenylation |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 9.21276295849321 10.1520157349019 2.29995550376099 19.7421915549271 3.69089577469979 Max fold change at or above threshold 2 19.7421915549271 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777195_at SPCC330.02.S1 --- 19.7000363939232 --- --- --- --- 0.331483364105225 0.688873112201691 6.20727062225342 2.18070721626282 0.466064006090164 0.805419981479645 0.24609400331974 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC330.02 /DEF=leucine-rich repeat protein (predicted) --- --- --- --- --- --- SPCC330.02 // ||SPCC613.14|leucine-rich repeat protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 12.7629691111971 2.0781528933169 19.7000363939232 18.7257379838917 6.57863245158385 Max fold change at or above threshold 1 19.7000363939232 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778817_at SPMIT.04.S1 --- 19.6756633801755 --- --- --- --- 0.669765889644623 13.1780881881714 5.43325805664063 0.486348420381546 0.943848013877869 0.334473013877869 0.5 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPMIT.04 /GEN=cox3 /DEF=cytochrome c oxidase (subunit 3) --- --- --- --- --- --- SPMIT.04 // |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe|chr mitochondrial|||Manual // sanger // 11 // --- --- No No 10.4427280810287 19.6756633801755 1.79747431810478 8.11217492656054 -1.37713182890403 Max fold change at or above threshold 2 19.6756633801755 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779129_at YJL153C.S1 Inositol 1-phosphate synthase, involved in synthesis of inositol phosphates and inositol-containing phospholipids; transcription is coregulated with other phospholipid biosynthetic genes by Ino2p and Ino4p, which bind the UASINO DNA element 19.6734214183649 6972.01196289063 494.537155151367 INO1 6020 // myo-inositol metabolism // traceable author statement 5737 // cytoplasm // inferred from direct assay 4512 // inositol-3-phosphate synthase activity // inferred from mutant phenotype 438.269012451172 8622.2509765625 5321.77294921875 550.805297851563 0.00415039015933871 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL153C /GEN=INO1 /DB_XREF=GI:37362665 /SEG=NC_001142:-134250,135851 /DEF=Inositol 1-phosphate synthase, involved in synthesis of inositol phosphates and inositol-containing phospholipids; transcription is coregulated with other phospholipid biosynthetic genes by Ino2p and Ino4p, which bind the UASINO DNA element /NOTE=Ino1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: inositol-3-phosphate synthase activity [goid GO:0004512] [evidence IMP] [pmid 7016881]; go_process: myo-inositol metabolism [goid GO:0006020] [evidence TAS] [pmid 9370339] --- --- --- --- --- --- S0003689 // INO1 SGDID:S0003689, Chr X from 135851-134250, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024023 // cdna:Genscan chromosome:SGD1:X:134250:135851:-1 // ensembl // 11 // --- /// GENEFINDER00000024481 // cdna:GeneFinder chromosome:SGD1:X:134250:135851:-1 // ensembl // 11 // --- /// YJL153C // cdna:known chromosome:SGD1:X:134250:135851:-1 gene:YJL153C // ensembl // 11 // --- --- No cerevisiae_gene 2.07990405257945 19.6734214183649 -1.38508318581886 12.1427086972334 1.25677445177105 Max fold change at or above threshold 4 19.6734214183649 Max fold change at or above threshold -0.828856025087731 1.22981813017268 0.399585506897922 -0.80054761198287 3733.274559021 3975.36537931429 1.06484677632625 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772494_at SPCC794.12c.S1 --- 19.5937281812795 --- --- --- --- 7.29631519317627 1.79733884334564 4.45592355728149 0.372380137443542 0.5 0.601073980331421 0.5 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC794.12c /GEN=mae2 /DEF=malic enzyme --- --- --- --- --- --- SPCC794.12c // |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.39340475252523 -4.05951010305581 -1.31745247965745 -1.63744173331996 -19.5937281812795 Max fold change at or above threshold 2 19.5937281812795 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-TagIN-M_at AFFX-r2-TagIN-M --- 19.574483590408 --- --- --- --- 7.94738245010376 2.94489717483521 1.16573095321655 0.406007260084152 0.366210997104645 0.466064006090164 0.533936023712158 0.79931640625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Clone 84A3, synthetic insert (1944 bp)+ poly A tail (21 bp), middle target sequence 745-1344 --- --- --- --- --- --- AFFX-r2-TagIN-M // --- // unknown // --- // --- /// AFFX-r2-TagIN-M // --- // unknown // --- // --- /// AFFX-r2-TagIN-M // --- // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-TagIN-M // --- // unknown // --- // --- /// AFFX-r2-TagIN-M // --- // affx // --- // --- /// AFFX-r2-TagIN-M // --- // affx // --- // --- /// AFFX-r2-TagIN-M // --- // affx // --- // --- /// AFFX-r2-TagIN-M // --- // affx // --- // --- /// AFFX-r2-TagIN-M // --- // affx // --- // --- /// AFFX-r2-TagIN-M // --- // affx // --- // --- /// AFFX-r2-TagIN-M // --- // affx // --- // --- /// AFFX-r2-TagIN-M // --- // affx // --- // --- /// AFFX-r2-TagIN-M // --- // affx // --- // --- /// AFFX-r2-TagIN-M // --- // affx // --- // --- /// AFFX-r2-TagIN-M // --- // affx // --- // --- /// AFFX-r2-TagIN-M // --- // affx // --- // --- --- AFFX_control No -2.20556352379224 -2.69869607605179 -15.8705464761923 -6.81751001650499 -19.574483590408 Max fold change at or above threshold 2 19.574483590408 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771054_at SPCC162.08c.S1 --- 19.572726510385 --- --- --- --- 18.7811641693115 5.15333938598633 9.13649559020996 6.30479621887207 0.00122069998178631 0.24609400331974 0.0375977009534836 0.0461426004767418 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC162.08c /GEN=nup211 /DEF=coiled-coil (predicted) --- --- --- --- --- --- SPCC162.08c // |nup211||coiled-coil |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.09363926415178 -3.64446483388691 -19.572726510385 -2.05562012085204 -2.97886934284951 Max fold change at or above threshold 4 19.572726510385 Max fold change at or above threshold PAAAPP No 3 0 PAPP 1 3 0 No No 2 < x = 3
1773470_at SPBC428.07.S1 --- 19.5341544894393 --- --- --- --- 1.40963470935822 27.5360221862793 18.9835567474365 3.26499462127686 0.943848013877869 0.219482004642487 0.398925989866257 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC428.07 /GEN=meu6 /DEF=lysine-rich protein --- --- --- --- --- --- AB054317 // Schizosaccharomyces pombe mRNA for Meu6, partial cds. // gb // 10 // --- /// SPBC428.07 // |meu6||lysine-rich protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.13078000943076 19.5341544894393 5.32623259463336 13.4670043390741 2.31619908306838 Max fold change at or above threshold 3 19.5341544894393 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777491_at SPBC713.07c.S1 --- 19.4488540219667 --- --- --- --- 4.62718152999878 6.81456995010376 0.600908517837524 1.1505731344223 0.219482004642487 0.592041015625 0.888427972793579 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC713.07c /DEF=vacuolar polyphosphatase (predicted) --- --- --- --- --- --- SPBC713.07c // |||vacuolar polyphosphatase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -19.4488540219667 1.47272587122934 -14.036617219546 -7.70030943586972 -4.02163182118976 Max fold change at or above threshold 2 19.4488540219667 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778302_at SPCC126.11c.S1 --- 19.4396333307691 --- --- --- --- 4.66928720474243 5.3080472946167 3.35169911384583 0.240194201469421 0.533936023712158 0.780517995357513 0.466064006090164 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC126.11c /DEF=RNA-binding protein --- --- --- --- --- --- SPCC126.11c // |||RNA-binding protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.03260693037962 1.13680034272158 1.43909722069748 -1.39311049295973 -19.4396333307691 Max fold change at or above threshold 3 19.4396333307691 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774006_at SPAC3A12.07.S1 --- 19.4236531361485 --- --- --- --- 6.97319793701172 4.3332347869873 3.19976210594177 3.99604845046997 0.303710997104645 0.334473013877869 0.432372987270355 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A12.07 /GEN=rpb11 /DEF=DNA-directed RNA polymerase (II subunit) (PMID 9322754) --- --- --- --- --- --- D85902 // Schizosaccharomyces pombe mRNA for RNA polymeraseII subunit Rpb11, complete cds. // gb // 11 // --- /// AF027822 // Schizosaccharomyces pombe RNA polymerase II subunit Rpb11 (rpb11+) mRNA, complete cds. // gb // 11 // --- /// SPAC3A12.07 // |rpb11||DNA-directed RNA polymerase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.28719784462654 -1.60923612031183 -19.4236531361485 -2.17928636759055 -1.74502337082315 Max fold change at or above threshold 4 19.4236531361485 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774068_at SPAC3G9.06.S1 --- 19.4175860592872 --- --- --- --- 0.411249309778214 7.98546886444092 1.97548770904541 3.40953755378723 0.696289002895355 0.398925989866257 0.805419981479645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G9.06 /DEF=phenylalanine-tRNA ligase (alpha subunit) (predicted) --- --- --- --- --- --- SPAC3G9.06 // |||phenylalanine-tRNA ligase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.49734996217544 19.4175860592872 2.54754838981315 4.80362559176279 8.29068273847315 Max fold change at or above threshold 2 19.4175860592872 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771284_at SPBC776.08c.S1 --- 19.4156840456265 --- --- --- --- 4.69429540634155 10.0856199264526 0.841295957565308 0.241778522729874 0.303710997104645 0.219482004642487 0.71875 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC776.08c /DEF=Nrap --- --- --- --- --- --- SPBC776.08c // |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.99804612778328 2.14848428857458 -1.08842263119274 -5.57983830081241 -19.4156840456265 Max fold change at or above threshold 2 19.4156840456265 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777901_at SPBC409.04c.S1 --- 19.4149389018575 --- --- --- --- 8.6681957244873 1.1309916973114 7.66103410720825 0.446470409631729 0.111571997404099 0.601073980331421 0.171387001872063 0.65771484375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC409.04c /GEN=mis12 /DEF=localization spindle pole body (PMID 10761928) --- --- --- --- --- --- SPBC409.04c // |mis12||kinetochore protein Mis12p|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -3.07380339571254 -7.66424346446873 -1.37220765527586 -1.13146549188854 -19.4149389018575 Max fold change at or above threshold 2 19.4149389018575 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771909_at SPBC30B4.07c.S1 --- 19.384624253041 --- --- --- --- 3.42747044563293 0.25269827246666 5.03758907318115 0.37241518497467 0.633789002895355 0.753906011581421 0.194580003619194 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30B4.07c /GEN=tfb4 /DEF=transcription initiation factor activity --- --- --- --- --- --- SPBC30B4.07c // |tfb4||transcription factor TFIIH complex Tfb4 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.00088273022825 -13.5634898180206 -19.384624253041 1.46976878519835 -9.20335846634732 Max fold change at or above threshold 2 19.384624253041 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774500_at YPR201W.S1 Arsenite transporter of the plasma membrane, required for resistance to arsenic compounds; transcription is activated by Arr1p in the presence of arsenite 19.3837821784873 8.0753710269928 1.9839331805706 ARR3 15700 // arsenite transport // inferred from genetic interaction 5887 // integral to plasma membrane // inferred from sequence similarity 15105 // arsenite transporter activity // inferred from genetic interaction /// 15105 // arsenite transporter activity // inferred from sequence similarity 0.582439124584198 11.2898731231689 4.86086893081665 3.38542723655701 0.870360970497131 0.171387001872063 0.334473013877869 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR201W /GEN=ARR3 /DB_XREF=GI:6325459 /SEG=NC_001148:+939916,941130 /DEF=Arsenite transporter of the plasma membrane, required for resistance to arsenic compounds; transcription is activated by Arr1p in the presence of arsenite /NOTE=Arr3p; go_component: integral to plasma membrane [goid GO:0005887] [evidence ISS] [pmid 9374482]; go_function: arsenite transporter activity [goid GO:0015105] [evidence IGI,ISS] [pmid 9374482]; go_process: arsenite transport [goid GO:0015700] [evidence IGI] [pmid 9374482] --- --- --- --- --- S0006405 // span:35-57,72-94,114-133,143-162,169-191,211-233,245-267,277-299,371-393 // numtm:9 S0006405 // ARR3 SGDID:S0006405, Chr XVI from 939918-941132, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020942 // cdna:GeneFinder chromosome:SGD1:XVI:940170:941132:1 // ensembl // 11 // --- /// YPR201W // cdna:known chromosome:SGD1:XVI:939918:941132:1 gene:YPR201W // ensembl // 11 // --- --- No cerevisiae_gene -1.46043662864565 19.3837821784873 1.09422499057739 8.34571155275122 5.81249969938722 Max fold change at or above threshold 3 19.3837821784873 Max fold change at or above threshold -0.980631535597832 1.38040839962905 -0.0372174894393428 -0.36255937459187 5.0296521037817 4.53504993237476 0.901662747004895 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774036_at SPAC13G6.01c.S1 --- 19.3619030872473 --- --- --- --- 2.55142760276794 0.558229506015778 4.26503753662109 0.131775662302971 0.665526986122131 0.904784977436066 0.665526986122131 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G6.01c /GEN=rad8 /DEF=zinc finger protein --- --- --- --- --- --- SPAC13G6.01c // |rad8|SPAC5H10.14c|ubiquitin-protein ligase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -15.6879794281011 -4.57057102011342 -2.35917392582978 1.67162788863541 -19.3619030872473 Max fold change at or above threshold 2 19.3619030872473 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775768_at SPAC644.12.S1 --- 19.3605991418417 --- --- --- --- 3.78424072265625 0.443477928638458 0.195460930466652 2.50012731552124 0.398925989866257 0.633789002895355 0.995850026607513 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC644.12 /GEN=cdc5 /DEF=transcriptional regulator --- --- --- --- --- --- L19525 // Schizosaccharomyces pombe Cdc5 (cdc5+) gene, complete cds. // gb // 11 // --- /// SPAC644.12 // |cdc5||transcriptional regulator|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.55399951164643 -8.53309821815579 -15.3795071638804 -19.3605991418417 -1.51361920617522 Max fold change at or above threshold 2 19.3605991418417 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776956_at SPAC644.11c.S1 --- 19.3071556442879 --- --- --- --- 0.906155586242676 10.0389795303345 17.4952869415283 5.06397294998169 0.753906011581421 0.303710997104645 0.24609400331974 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC644.11c /DEF=pyruvate dehydrogenase (lipoamide) kinase (predicted) --- --- --- --- --- --- SPAC644.11c // |||pyruvate dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.67676491544171 11.0786488355278 -1.16977590866575 19.3071556442879 5.58841442558355 Max fold change at or above threshold 3 19.3071556442879 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-U57609-2_s_at AFFX-Sc-U57609-2 --- 19.2754171922883 --- --- --- --- 8.0141487121582 0.415770441293716 3.16033935546875 0.496220022439957 0.366210997104645 0.919434010982513 0.5 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL U57609 /FEA=CDS_2 /DB_XREF=AAB08065.1 GI:1373326 /PROD=neomycin phosphotransferase --- --- --- --- --- --- AFFX-Sc-U57609-2 // --- // affx // --- // --- --- No No -1.78200977731568 -19.2754171922883 -13.4211523505989 -2.53585068270921 -16.1503936756763 Max fold change at or above threshold 2 19.2754171922883 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772520_s_at SPAC212.03.S1 --- 19.275017940614 --- --- --- --- 0.282148897647858 5.43842506408691 0.414890050888062 0.180672243237495 0.968017578125 0.303710997104645 0.828612983226776 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC212.03 /DEF=hypothetical protein --- --- --- --- --- --- SPAC212.03 // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPBCPT2R1.03 // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.99912794990275 19.275017940614 -1.08588936789486 1.47046490114547 -1.56166156235172 Max fold change at or above threshold 1 19.275017940614 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773822_at SPBC8E4.04.S1 --- 19.2324752594281 --- --- --- --- 8.27646255493164 1.33492910861969 0.924960553646088 8.32817840576172 0.194580003619194 0.805419981479645 0.850341975688934 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8E4.04 /DEF=aldoketo reductase --- --- --- --- --- --- SPBC8E4.04 // |||aldo/keto reductase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -19.2324752594281 -6.19992664890607 -1.46045344988689 -8.94790866735536 1.00624854525552 Max fold change at or above threshold 2 19.2324752594281 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773554_at SPAC1F3.02c.S1 --- 19.2070737344453 --- --- --- --- 6.3561372756958 1.42404687404633 3.09271693229675 3.49301075935364 0.0805663987994194 0.533936023712158 0.398925989866257 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F3.02c /GEN=mkh1 /DEF=MEK kinase (PMID 9199286) --- --- --- --- --- --- SPAC1F3.02c // |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -19.2070737344453 -4.46343262398049 -1.60678796242153 -2.05519529101408 -1.81967297371622 Max fold change at or above threshold 3 19.2070737344453 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770076_at SPAC1B3.04c.S1 --- 19.1911741134778 --- --- --- --- 6.22313594818115 0.324270725250244 0.977210760116577 0.650765299797058 0.696289002895355 0.995850026607513 0.904784977436066 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B3.04c /DEF=GTP binding --- --- --- --- --- --- SPAC1B3.04c // |||translation elongation factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.04078083118188 -19.1911741134778 -8.57960156956895 -6.36826384048284 -9.56279621873177 Max fold change at or above threshold 1 19.1911741134778 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775040_at SPCC1739.15.S1 --- 19.1713495977039 --- --- --- --- 4.76435613632202 0.299300044775009 4.37207889556885 0.890669941902161 0.334473013877869 0.976073980331421 0.194580003619194 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1739.15 /GEN=wtf21 /DEF=wtf element --- --- --- --- --- --- SPCC1739.15 // |wtf21|SPCC1739.15|wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -16.3720589178083 -15.9183275094513 -19.1713495977039 -1.0897232758427 -5.34918257839376 Max fold change at or above threshold 2 19.1713495977039 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777541_at SPAC29A4.14c.S1 --- 19.1352968353678 --- --- --- --- 0.339621156454086 6.49875164031982 5.82070922851563 1.71070301532745 0.780517995357513 0.0561522990465164 0.194580003619194 0.018554700538516 A M A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29A4.14c /DEF=peroxin (predicted) --- --- --- --- --- --- SPAC29A4.14c // |||peroxin |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.11085676778145 19.1352968353678 1.82018455052938 17.1388298929561 5.037092015081 Max fold change at or above threshold 2 19.1352968353678 Max fold change at or above threshold AAMAAP No 4 0 AMAP 2 1 1 No No x = 1
1775845_at SPBC8D2.15.S1 --- 19.1275211042788 --- --- --- --- 5.27116775512695 2.49096012115479 7.84024477005005 0.275580286979675 0.533936023712158 0.533936023712158 0.366210997104645 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8D2.15 /DEF=lipoic acid synthetase (predicted) --- --- --- --- --- --- SPBC8D2.15 // |||lipoic acid synthetase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.01137333432875 -2.11611888538918 -1.57436588863464 1.48738289773159 -19.1275211042788 Max fold change at or above threshold 2 19.1275211042788 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770850_at YHR214C-D.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 19.1170313997468 31.022198677063 1.52025365829468 --- --- --- --- 1.68220090866089 32.1586875915527 29.8857097625732 1.35830640792847 0.805419981479645 0.171387001872063 0.149657994508743 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR214C-D /GEN=FLO5 /DB_XREF=GI:33438812 /SEG=NC_001140:-550646,550939 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Yhr214c-dp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028653 // span:7-29,73-95 // numtm:2 S0028653 // YHR214C-D SGDID:S0028653, Chr VIII from 550940-550647, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YAR069C // cdna:known chromosome:SGD1:I:224002:224295:-1 gene:YAR069C // ensembl // 11 // --- /// YHR214C-D // cdna:known chromosome:SGD1:VIII:550647:550940:-1 gene:YHR214C-D // ensembl // 11 // --- --- No cerevisiae_gene 2.76852490949822 19.1170313997468 -3.56494317247016 17.7658385563254 -1.23845466592946 Max fold change at or above threshold 2 19.1170313997468 Max fold change at or above threshold -0.855223597106198 0.931339254444887 0.798094967007596 -0.874210624346285 16.2712261676788 17.0587262891044 1.04839832679542 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770782_at SPCC188.07.S1 --- 19.0956420567223 --- --- --- --- 0.1857078820467 3.54621124267578 0.302033424377441 0.285837978124619 0.976073980331421 0.274170011281967 0.888427972793579 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC188.07 /DEF=sequence orphan --- --- --- --- --- --- SPCC188.07 // |ccq1||HEAT repeat |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.24233298790104 19.0956420567223 -1.25306475713047 1.62638990358788 1.53918064744683 Max fold change at or above threshold 1 19.0956420567223 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769505_at SPAC13C5.02.S1 --- 19.0677605617283 --- --- --- --- 6.30822658538818 7.35552740097046 6.07237100601196 6.01406764984131 0.219482004642487 0.334473013877869 0.194580003619194 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13C5.02 /GEN=hgp1 /DEF=hyphal growth protein 1 --- --- --- --- --- --- SPAC13C5.02 // |dre4||WW domain |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -19.0677605617283 1.16602143271267 -1.03382834647294 -1.03884077226881 -1.04891181022126 Max fold change at or above threshold 4 19.0677605617283 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775855_at SPBC4.06.S1 --- 19.0667221855588 --- --- --- --- 10.4150762557983 1.30542731285095 0.546243667602539 0.852257192134857 0.239013671875 0.696289002895355 0.870360970497131 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4.06 /DEF=acid phosphatase activity (predicted) --- --- --- --- --- --- SPBC4.06 // |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -18.3231148039678 -7.97828891219736 -16.2326376041213 -19.0667221855588 -12.2205788955669 Max fold change at or above threshold 1 19.0667221855588 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780172_at SPAC1751.04.S1 --- 19.0510920904929 --- --- --- --- 0.352093994617462 0.835320711135864 6.7077751159668 0.252132415771484 0.953857004642487 0.696289002895355 0.24609400331974 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1751.04 /DEF=hypothetical protein --- --- --- --- --- --- SPAC1751.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.19805428337642 2.37243668993392 5.97162594459568 19.0510920904929 -1.39646460587034 Max fold change at or above threshold 1 19.0510920904929 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770965_at SPBC947.05c.S1 --- 19.0483448469576 --- --- --- --- 4.40388441085815 1.04008364677429 4.13383436203003 3.0530366897583 0.274170011281967 0.567627012729645 0.274170011281967 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC947.05c /DEF=ferric-chelate reductase activity (predicted) --- --- --- --- --- --- SPBC947.05c // |||ferric-chelate reductase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -19.0483448469576 -4.23416368915743 -1.30104225774333 -1.06532677054228 -1.44246036270425 Max fold change at or above threshold 3 19.0483448469576 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773492_at SPMIT.02.S1 --- 19.0464949607849 --- --- --- --- 1.90464949607849 8.38141250610352 0.12007263302803 2.02077627182007 0.398925989866257 0.194580003619194 0.665526986122131 0.0771484375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPMIT.02 /DEF=hypothetical protein --- --- --- --- --- --- SPMIT.02 // |||hypothetical protein|Schizosaccharomyces pombe|chr mitochondrial|||Manual // sanger // 11 // --- --- No No 1.93574557195251 4.40050125934463 -19.0464949607849 -15.8624779689295 1.06097015539115 Max fold change at or above threshold 1 19.0464949607849 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772118_at SPBC32F12.09.S1 --- 19.0322145231515 --- --- --- --- 8.33882617950439 1.59388399124146 4.9532732963562 8.67290687561035 0.533936023712158 0.780517995357513 0.303710997104645 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32F12.09 /GEN=rum1 /DEF=CDK inhibitor --- --- --- --- --- --- X77730 // S.pombe rum1+ gene. // gb // 11 // --- /// SPBC32F12.09 // |rum1||CDK inhibitor Rum1p|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -19.0322145231515 -5.23176481182259 -17.9202704469151 -1.68349809925463 1.04006327616315 Max fold change at or above threshold 3 19.0322145231515 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774097_at YDR194W-A.S1 Identified by fungal homology and RT-PCR 19.020577114089 8.4741199016571 1.06704108417034 --- --- --- --- 0.490122884511948 7.62581968307495 9.32242012023926 1.64395928382874 0.665526986122131 0.0805663987994194 0.171387001872063 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR194W-A /GEN=MSS116 /DB_XREF=GI:33438782 /SEG=NC_001136:+848064,848216 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ydr194w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028541 // YDR194W-A SGDID:S0028541, Chr IV from 848066-848218, Uncharacterized ORF // sgd // 11 // --- /// YDR194W-A // cdna:known chromosome:SGD1:IV:848066:848218:1 gene:YDR194W-A // ensembl // 11 // --- --- No cerevisiae_gene 4.06616256617573 15.5589953541316 10.0089215510713 19.020577114089 3.3541777700622 Max fold change at or above threshold 2 19.020577114089 Max fold change at or above threshold -0.982265327596455 0.655210894504602 1.0445411803461 -0.717486747254249 4.77058049291372 4.35774071235498 0.91346131122366 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775931_at SPCC14G10.02.S1 --- 18.984729411021 --- --- --- --- 2.99814009666443 5.79462814331055 3.6708722114563 4.45813274383545 0.26708984375 0.274170011281967 0.24609400331974 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC14G10.02 /DEF=involved in ribosome biogenesis and assembly (predicted) --- --- --- --- --- --- SPCC14G10.02 // ||SPCC18B5.13|conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -18.984729411021 1.93274095155104 -5.56208017308421 1.22438314858612 1.4869661190267 Max fold change at or above threshold 4 18.984729411021 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780043_at SPAC167.07c.S1 --- 18.9804977279459 --- --- --- --- 7.45178413391113 0.964974641799927 0.392602145671844 1.27221667766571 0.194580003619194 0.725830018520355 0.904784977436066 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC167.07c /DEF=ubiquitin-protein ligase (E3) (predicted) --- --- --- --- --- --- SPAC167.07c // ||SPAC57A7.03c|ubiquitin-protein ligase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -16.9120342222644 -7.72225902228025 -1.61001420601618 -18.9804977279459 -5.857323099697 Max fold change at or above threshold 1 18.9804977279459 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772941_at SPCC74.03c.S1 --- 18.9752238246143 --- --- --- --- 8.59073734283447 1.25994896888733 3.09721279144287 0.452734440565109 0.466064006090164 0.753906011581421 0.432372987270355 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC74.03c /GEN=ssp2 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPCC74.03c // |ssp2||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.36059603139144 -6.81832165823432 -14.1422896573595 -2.77369942632595 -18.9752238246143 Max fold change at or above threshold 2 18.9752238246143 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779726_at SPAC16E8.03.S1 --- 18.9559639699971 --- --- --- --- 5.19649362564087 1.03675615787506 5.15808343887329 3.48418974876404 0.274170011281967 0.567627012729645 0.0561522990465164 0.171387001872063 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16E8.03 /GEN=gna1 /DEF=glucosamine-phosphate N-acetyltransferase --- --- --- --- --- --- AB017629 // Schizosaccharomyces pombe SpGNA1 mRNA for acetyltransferase, complete cds. // gb // 11 // --- /// SPAC16E8.03 // |gna1|spgna1|glucosamine-phosphate N-acetyltransferase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -18.9559639699971 -5.01226212756876 -1.37530907214656 -1.0074466005102 -1.49144966271835 Max fold change at or above threshold 3 18.9559639699971 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1769761_at SPCC1442.05c.S1 --- 18.9121372358211 --- --- --- --- 6.80839729309082 1.07213139533997 5.90471935272217 0.58549302816391 0.601073980331421 0.850341975688934 0.466064006090164 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1442.05c /DEF=hypothetical protein --- --- --- --- --- --- SPCC1442.05c // |||hypothetical protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -18.9121372358211 -6.35033851511449 -1.0502112743601 -1.15304333472717 -11.6284856788846 Max fold change at or above threshold 2 18.9121372358211 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770769_at SPAC25H1.09.S1 --- 18.9022781855171 --- --- --- --- 6.87268161773682 4.93313312530518 3.22755002975464 0.516933381557465 0.24609400331974 0.0805663987994194 0.111571997404099 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25H1.09 /GEN=mde5 /DEF=alpha-amylase --- --- --- --- --- --- AB054314 // Schizosaccharomyces pombe mRNA for Meu30, partial cds. // gb // 11 // --- /// SPAC25H1.09 // |mde5|meu30, SPAC4A8.01|alpha-amylase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -18.9022781855171 -1.39316767724805 -1.64387285442266 -2.12938035177701 -13.2951011927885 Max fold change at or above threshold 3 18.9022781855171 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771688_at SPBC3B9.19.S1 --- 18.8865143170309 --- --- --- --- 4.60629224777222 1.87252879142761 0.311215877532959 0.333198428153992 0.5 0.366210997104645 0.943848013877869 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B9.19 /DEF=chaperone activity (predicted) --- --- --- --- --- --- SPBC3B9.19 // |mge1||GrpE domain chaperone protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 1.64276345108407 -2.4599313339585 -18.8865143170309 -14.800955157837 -13.8244717218275 Max fold change at or above threshold 1 18.8865143170309 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777754_at SPBC2G2.03c.S1 --- 18.8486370861438 --- --- --- --- 0.434496343135834 2.17558026313782 2.72739434242249 4.13639640808105 0.828612983226776 0.805419981479645 0.5 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G2.03c /DEF=translocon --- --- --- --- --- --- SPBC2G2.03c // |sbh1||translocon|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 18.8486370861438 5.00713135451563 2.76217766064959 6.27713992421298 9.51997979598167 Max fold change at or above threshold 2 18.8486370861438 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771848_at SPAC328.04.S1 --- 18.8317621359671 --- --- --- --- 6.81154823303223 1.52702140808105 1.19561898708344 4.07914400100708 0.219482004642487 0.533936023712158 0.696289002895355 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC328.04 /DEF=AAA family ATPase --- --- --- --- --- --- SPAC328.04 // |||AAA family ATPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -18.8317621359671 -4.46067631860644 -2.27732202966416 -5.6970893793249 -1.6698474560718 Max fold change at or above threshold 2 18.8317621359671 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773608_at YLR307W.S1 Chitin deacetylase, together with Cda2p involved in the biosynthesis ascospore wall component, chitosan; required for proper rigidity of the ascospore wall 18.8232358324863 33.6271266937256 17.7650909423828 CDA1 30476 // spore wall assembly (sensu Fungi) // inferred from direct assay /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 5631 // chitosan layer of spore wall // inferred from sequence similarity 4099 // chitin deacetylase activity // inferred from direct assay /// 4099 // chitin deacetylase activity // inferred from sequence similarity 20.7393283843994 43.651683807373 23.6025695800781 14.7908535003662 0.0375977009534836 0.014160200022161 0.014160200022161 0.0239257998764515 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR307W /GEN=CDA1 /DB_XREF=GI:6323338 /SEG=NC_001144:+745622,746527 /DEF=Required for proper formation of the ascospore wall /NOTE=Cda1p; go_component: chitosan layer of spore wall [goid GO:0005631] [evidence ISS] [pmid 8940152]; go_function: chitin deacetylase activity [goid GO:0004099] [evidence IDA,ISS] [pmid 8940152]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence IDA,IMP] [pmid 8940152] --- --- --- --- --- --- S0004298 // CDA1 SGDID:S0004298, Chr XII from 745622-746527, Verified ORF // sgd // 11 // --- /// GENSCAN00000018057 // cdna:Genscan chromosome:SGD1:XII:745715:746527:1 // ensembl // 11 // --- /// YLR307W // cdna:known chromosome:SGD1:XII:745622:746527:1 gene:YLR307W // ensembl // 11 // --- GENEFINDER00000024609 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -18.8232358324863 2.10477808144495 -1.20605102948871 1.13805853027683 -1.40217252397814 Max fold change at or above threshold 4 18.8232358324863 Max fold change at or above threshold -0.395896922393809 1.43410767800365 -0.167210501316131 -0.871000254293708 25.6961088180542 12.5203813247231 0.487248143809471 PAPPPP Called_P_>2EXP 4 0 PPPP 0 4 0 Yes Yes 3 < x
1779685_at SPBC16D10.09.S1 --- 18.8212231900821 --- --- --- --- 8.62997055053711 13.1051816940308 5.57570934295654 3.96027779579163 0.194580003619194 0.0239257998764515 0.171387001872063 0.303710997104645 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16D10.09 /GEN=pcn1 /DEF=PCNA (PMID 1361173) --- --- --- --- --- --- SPBC16D10.09 // |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.24145206806243 1.51856621262921 -18.8212231900821 -1.54777984642238 -2.1791326254203 Max fold change at or above threshold 4 18.8212231900821 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1773216_at SPAC1002.17c.S1 --- 18.8077044304279 --- --- --- --- 9.90173149108887 5.83115148544312 4.97265100479126 1.35918605327606 0.533936023712158 0.624267578125 0.533936023712158 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1002.17c /DEF=uracil phosphoribosyltransferase activity (predicted) --- --- --- --- --- --- SPAC1002.17c // |||uracil phosphoribosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.47488399515632 -1.6980748169221 -18.8077044304279 -1.99123796975664 -7.28504494820456 Max fold change at or above threshold 3 18.8077044304279 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771953_at SPBC18A7.02c.S1 --- 18.8060550267107 --- --- --- --- 1.96568846702576 2.00462412834167 0.373172104358673 0.104524232447147 0.753906011581421 0.725830018520355 0.995849609375 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18A7.02c /DEF=similar to the transmembrane region of mannosyltransferases --- --- --- --- --- --- SPBC18A7.02c // |||seven transmembrane receptor-like protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.51042172190872 1.01980764600752 -2.26718521911045 -5.26751181041239 -18.8060550267107 Max fold change at or above threshold 0 18.8060550267107 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770192_at SPCC1884.01.S1 --- 18.8040514795146 --- --- --- --- 15.7459011077881 10.9303255081177 5.49924564361572 6.84864044189453 0.0676269978284836 0.0107421996071935 0.111571997404099 0.0676269978284836 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1884.01 /DEF=possibly pseudogene telomeric and has 2 non-consesus branch sites --- --- --- --- --- --- SPCC1884.01 // |||possibly pseudogene telomeric and has 2 non-consesus branch sites|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -18.8040514795146 -1.44057019126228 -3.44903362127898 -2.86328382622225 -2.29912801546234 Max fold change at or above threshold 4 18.8040514795146 Max fold change at or above threshold AAPPAA No 4 0 APAA 3 1 0 No No x = 1
1773833_at SPBC24C6.10c.S1 --- 18.783341028296 --- --- --- --- 1.08210647106171 20.3255748748779 10.340913772583 1.86358344554901 0.567627012729645 0.171387001872063 0.334473013877869 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC24C6.10c /DEF=hypothetical protein --- --- --- --- --- --- SPBC24C6.10c // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.51373184599948 18.783341028296 3.20298892839741 9.55628124322835 1.72218122281494 Max fold change at or above threshold 2 18.783341028296 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777363_at SPAC1782.12c.S1 --- 18.7491633715829 --- --- --- --- 6.18742084503174 0.693599820137024 0.692895710468292 0.719273686408997 0.274170011281967 0.805419981479645 0.828612983226776 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1782.12c /DEF=conserved protein (broad species distribution) --- --- --- --- --- --- SPAC1782.12c // |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -18.7491633715829 -8.92073594224604 -7.43560786136184 -8.92980105310506 -8.6023178130187 Max fold change at or above threshold 1 18.7491633715829 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776247_at SPAC1782.11.S1 --- 18.7391704222275 --- --- --- --- 11.4267425537109 5.39126014709473 1.35411536693573 4.06791543960571 0.432372987270355 0.753906011581421 0.932372987270355 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1782.11 /DEF=adenosine-5-phosphosulfate 3-phosphotransferase (adenylylsulfate kinase) (predicted) --- --- --- --- --- --- SPAC1782.11 // |||adenylyl-sulfate kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.20328481543879 -2.11949381813242 -18.7391704222275 -8.43852956160513 -2.80899215417774 Max fold change at or above threshold 3 18.7391704222275 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775601_at SPAC1D4.03c.S1 --- 18.736041304538 --- --- --- --- 3.11197066307068 0.400997847318649 0.630613029003143 2.73221611976624 0.432372987270355 0.919434010982513 0.932372987270355 0.32666015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1D4.03c /DEF=involved in intracellular protein transport (predicted) --- --- --- --- --- --- SPAC1D4.03c // |||SAND family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -18.736041304538 -7.76056700523327 -8.57778174272046 -4.93483407405965 -1.1389913998959 Max fold change at or above threshold 2 18.736041304538 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774851_at SPBC14F5.01.S1 --- 18.7233003601394 --- --- --- --- 0.16439551115036 0.970385909080505 3.07802653312683 1.03855609893799 0.805419981479645 0.533936023712158 0.665526986122131 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14F5.01 /DEF=sequence orphan --- --- --- --- --- --- SPBC14F5.01 // ||SPBC1861.10|sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.32864598587967 5.90275185916097 17.4087993215617 18.7233003601394 6.31742370379018 Max fold change at or above threshold 1 18.7233003601394 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778742_at SPAC4G9.03.S1 --- 18.7160384257655 --- --- --- --- 6.35264444351196 0.444269299507141 0.426690518856049 0.449934273958206 0.567627012729645 0.870360970497131 0.805419981479645 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G9.03 /GEN=adk1 /DEF=adenylate kinase (PMID 8496185) --- --- --- --- --- --- SPAC4G9.03 // |adk1||adenylate kinase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -18.7160384257655 -14.2990849256507 -12.4787289034458 -14.8881781121908 -14.1190498506056 Max fold change at or above threshold 1 18.7160384257655 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774239_at YGR079W.S1 Hypothetical protein 18.7045898328708 223.908897399902 72.4498863220215 --- --- --- --- 57.8696517944336 188.312026977539 259.505767822266 87.0301208496094 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR079W /GEN=PAC10 /DB_XREF=GI:6321516 /SEG=NC_001139:+640722,641834 /DEF=Hypothetical ORF /NOTE=Ygr079wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003311 // span:10-32 // numtm:1 S0003311 // YGR079W SGDID:S0003311, Chr VII from 640724-641836, Uncharacterized ORF // sgd // 10 // --- /// GENEFINDER00000021519 // cdna:GeneFinder chromosome:SGD1:VII:640724:641836:1 // ensembl // 10 // --- /// GENSCAN00000019398 // cdna:Genscan chromosome:SGD1:VII:640895:641836:1 // ensembl // 10 // --- /// YGR079W // cdna:known chromosome:SGD1:VII:640724:641836:1 gene:YGR079W // ensembl // 10 // --- --- No cerevisiae_gene 18.7045898328708 3.25407223196136 1.19007985533727 4.48431534967741 1.5038991621854 Max fold change at or above threshold 4 18.7045898328708 Max fold change at or above threshold -0.971966807014925 0.431931142561355 1.19816026599058 -0.658124601537007 148.179391860962 92.9144281623 0.627040150424443 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771964_at SPAC1952.12c.S1 --- 18.6937502669979 --- --- --- --- 7.29005146026611 2.15730428695679 3.78844571113586 7.55257892608643 0.129638999700546 0.303710997104645 0.398925989866257 0.036376953125 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1952.12c /GEN=csn71 /DEF=COP9signalosome complex (subunit 7a) --- --- --- --- --- --- SPAC1952.12c // |csn71|csn7a, csn7|COP9/signalosome complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.08252265541381 -3.37924116887093 -18.6937502669979 -1.92428558203633 1.03601174384724 Max fold change at or above threshold 3 18.6937502669979 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1773757_at SPBC1709.14.S1 --- 18.6858057748578 --- --- --- --- 11.0954523086548 14.0018167495728 0.593790411949158 5.3012375831604 0.633789002895355 0.567627012729645 0.953857004642487 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1709.14 /DEF=peptide N-glycanase (predicted) --- --- --- --- --- --- SPBC1709.14 // |||peptide N-glycanase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.80508424349657 1.26194195243856 -14.7440000335828 -18.6858057748578 -2.09299284074721 Max fold change at or above threshold 3 18.6858057748578 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777728_at SPCC18.06c.S1 --- 18.6811507433792 --- --- --- --- 11.6591739654541 12.6797399520874 7.80450820922852 5.13567113876343 0.24609400331974 0.432372987270355 0.129638999700546 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18.06c /DEF=CCR4-Not complex (predicted) --- --- --- --- --- --- SPCC18.06c // |||CCR4-Not complex |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.28457529110488 1.08753330121475 -18.6811507433792 -1.49390245392626 -2.27023375337491 Max fold change at or above threshold 4 18.6811507433792 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778648_at SPAC23C4.11.S1 --- 18.67909383641 --- --- --- --- 2.74100232124329 8.00117778778076 2.71112823486328 0.711319327354431 0.432372987270355 0.24609400331974 0.466064006090164 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C4.11 /GEN=atp18 /DEF=F-type ATPase subunit J (predicted) --- --- --- --- --- --- SPAC23C4.11 // |atp18||F-type ATPase subunit J |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -18.67909383641 2.91907005177271 -6.54064256940147 -1.01101906062422 -3.85340622113803 Max fold change at or above threshold 3 18.67909383641 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777709_at SPBC23E6.09.S1 --- 18.6742102484364 --- --- --- --- 0.56706565618515 10.589503288269 2.68063712120056 1.26785504817963 0.753906011581421 0.366210997104645 0.601073980331421 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23E6.09 /DEF=TPR repeat protein --- --- --- --- --- --- SPBC23E6.09 // |||TPR repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 7.37727820783804 18.6742102484364 8.59676955003073 4.72720767333037 2.23581702462627 Max fold change at or above threshold 2 18.6742102484364 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776669_at SPAC3F10.10c.S1 --- 18.6595982161036 --- --- --- --- 8.53512477874756 9.17496871948242 9.71858596801758 1.08049881458282 0.334473013877869 0.432372987270355 0.398925989866257 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3F10.10c /GEN=map3 /DEF=pheromone M-factor receptor (PMID 8380233) --- --- --- --- --- --- SPAC3F10.10c // |map3||pheromone M-factor receptor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- SPAC3F10.09 // sanger // 1 // Negative Strand Matching Probes No No -18.6595982161036 1.07496597382244 -6.55818787711303 1.13865774900173 -7.89924492609733 Max fold change at or above threshold 3 18.6595982161036 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770673_at SPCC4B3.06c.S1 --- 18.6554546968367 --- --- --- --- 10.9912805557251 3.74510407447815 8.80039310455322 6.65252161026001 0.303710997104645 0.567627012729645 0.432372987270355 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4B3.06c /DEF=NADPH-dependent FMN reductase (predicted) --- --- --- --- --- --- SPCC4B3.06c // |||NADPH-dependent FMN reductase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -18.6554546968367 -2.93483981676975 -1.54259271429266 -1.24895336209906 -1.65219764769701 Max fold change at or above threshold 4 18.6554546968367 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773843_at SPAC22A12.05.S1 --- 18.6499690206949 --- --- --- --- 3.7614164352417 0.837171852588654 3.64485502243042 1.49730575084686 0.398925989866257 0.805419981479645 0.194580003619194 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22A12.05 /GEN=rpc11 /DEF=localization DNA-directed RNA polymerase III complex (subunit) (PMID 10079944) --- --- --- --- --- --- AF027823 // Schizosaccharomyces pombe RNA polymerase subunit mRNA, complete cds. // gb // 11 // --- /// SPAC22A12.05 // |rpc11||DNA-directed RNA polymerase III complex subunit Rpc11 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -18.6499690206949 -4.49300394370746 -3.93419003943099 -1.03197971170155 -2.5121231472692 Max fold change at or above threshold 2 18.6499690206949 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771452_at SPCC1020.09.S1 --- 18.6290532612021 --- --- --- --- 6.1824836730957 1.46802854537964 3.85688900947571 2.02185535430908 0.303710997104645 0.696289002895355 0.533936023712158 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1020.09 /DEF=WD repeat protein --- --- --- --- --- --- SPCC1020.09 // |||WD repeat protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -18.6290532612021 -4.21141924832046 1.07226039843253 -1.60297163281246 -3.05782689148325 Max fold change at or above threshold 2 18.6290532612021 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778875_at SPCC191.01.S1 --- 18.6147358731074 --- --- --- --- 0.540266394615173 10.0569162368774 9.56451225280762 6.96706676483154 0.665526986122131 0.0952147990465164 0.149657994508743 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC191.01 /DEF=sequence orphan --- --- --- --- --- --- SPCC191.01 // ||SPCC417.13|sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.66595801533202 18.6147358731074 8.81276357913127 17.7033262630009 12.8956137828897 Max fold change at or above threshold 3 18.6147358731074 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775749_at SPAC30C2.03.S1 --- 18.5970514633451 --- --- --- --- 12.6086263656616 16.1801891326904 19.4913158416748 5.37604999542236 0.0676269978284836 0.129638999700546 0.111571997404099 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30C2.03 /DEF=hypothetical protein --- --- --- --- --- --- SPAC30C2.03 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.37504876596034 1.28326343119784 -18.5970514633451 1.54587147532244 -2.3453327957139 Max fold change at or above threshold 4 18.5970514633451 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-LysX-5_at AFFX-LysX-5 --- 18.5848020002354 --- --- --- --- 2.41182112693787 1.71324634552002 0.30506420135498 0.877607703208923 0.672934591770172 0.631562292575836 0.94155615568161 0.574037730693817 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 387-658 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). --- --- --- --- --- --- X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-LysX-5 // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 387-658 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // --- // --- /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X17013 // Bacillus subtilis /REF=X17013 /DEF=B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 1008-1263 of X17013 /LEN=1108 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X17013 // Bacillus subtilis /REF=X17013 /DEF=B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 /LEN=1108 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-LysX-5 // --- // unknown // --- // --- /// AFFX-LysX-5 // --- // unknown // --- // --- /// AFFX-LysX-5 // --- // unknown // --- // --- /// AFFX-LysX-5 // --- // unknown // --- // --- /// AFFX-LysX-5 // --- // gb // --- // --- /// AFFX-LysX-5 // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 387-658 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // --- // --- /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-LysX-5 // --- // unknown // --- // --- /// AFFX-LysX-5 // --- // affx // --- // --- /// AFFX-LysX-5 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-LysX-5 // --- // affx // --- // --- /// AFFX-LysX-5 // --- // affx // --- // --- /// AFFX-LysX-5 // --- // affx // --- // --- /// AFFX-LysX-5 // --- // affx // --- // --- /// AFFX-LysX-5 // --- // affx // --- // --- /// AFFX-LysX-5 // --- // affx // --- // --- /// AFFX-LysX-5 // --- // affx // --- // --- /// AFFX-LysX-5 // --- // affx // --- // --- /// AFFX-LysX-5 // --- // affx // --- // --- /// AFFX-LysX-5 // --- // affx // --- // --- /// AFFX-LysX-5 // --- // affx // --- // --- 50812173 // gb // 20 // Negative Strand Matching Probes AFFX_control No -12.8350897388084 -1.40774917351761 -18.5848020002354 -7.9059460802856 -2.74817679712607 Max fold change at or above threshold 0 18.5848020002354 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775365_at SPBC1734.05c.S1 --- 18.5713848069949 --- --- --- --- 0.132205709815025 0.739879310131073 0.318318337202072 0.137144804000854 0.991943001747131 0.828612983226776 0.981445014476776 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1734.05c /GEN=spf31 /DEF=spliceosome associated protein (predicted) --- --- --- --- --- --- SPBC1734.05c // |spf31||DNAJ domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 18.5713848069949 5.59642477746438 -1.04186850122093 2.40775029798217 1.0373591593944 Max fold change at or above threshold 0 18.5713848069949 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778447_at SPAC1687.07.S1 --- 18.5675720551281 --- --- --- --- 0.333670228719711 0.270656734704971 6.1954460144043 0.142847537994385 0.665526986122131 0.870360970497131 0.303710997104645 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.07 /DEF=conserved fungal protein --- --- --- --- --- --- SPAC1687.07 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.04951279975241 -1.23281701851398 14.5620054813656 18.5675720551281 -2.3358486495779 Max fold change at or above threshold 1 18.5675720551281 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773364_at SPBP8B7.06.S1 --- 18.5660162287577 --- --- --- --- 8.86946392059326 0.477725744247437 0.627301752567291 4.26496410369873 0.0952147990465164 0.725830018520355 0.870360970497131 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.06 /GEN=rpp201 /DEF=60S acidic ribosomal protein (P2A subunit) --- --- --- --- --- --- Y00466 // Yeast (S. pombe) mRNA for ribosomal protein L40c. // gb // 11 // --- /// SPBP8B7.06 // |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.10736891554233 -18.5660162287577 -1.7575397145982 -14.1390708447635 -2.07961045039074 Max fold change at or above threshold 2 18.5660162287577 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770322_at SPAC30D11.05.S1 --- 18.5480752240682 --- --- --- --- 0.407828390598297 7.56443166732788 0.393619775772095 1.47121524810791 0.9296875 0.432372987270355 0.665526986122131 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30D11.05 /GEN=aps3 /DEF=AP-3 adaptor complex (predicted) --- --- --- --- --- --- SPAC30D11.05 // |aps3||AP-3 adaptor complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 9.86837118042742 18.5480752240682 2.21013880718626 -1.03609730938526 3.60743705446693 Max fold change at or above threshold 1 18.5480752240682 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776012_at SPAC29E6.09.S1 --- 18.5358700834125 --- --- --- --- 0.528858304023743 1.84767949581146 9.80284881591797 3.20786738395691 0.665526986122131 0.432372987270355 0.0676269978284836 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29E6.09 /DEF=sequence orphan --- --- --- --- --- --- SPAC29E6.09 // ||SPAC30.13|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 10.0828165274204 3.49371368805908 -1.33062632163465 18.5358700834125 6.06564624125273 Max fold change at or above threshold 2 18.5358700834125 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777420_at SPCC16C4.03.S1 --- 18.5324089313722 --- --- --- --- 0.721934258937836 13.3791809082031 1.50375711917877 2.93422365188599 0.780517995357513 0.303710997104645 0.665526986122131 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16C4.03 /GEN=pin1 /DEF=peptidyl-prolyl cis-trans isomerase --- --- --- --- --- --- SPCC16C4.03 // |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.33627676642932 18.5324089313722 -1.76580091925676 2.08295575471264 4.06439175805708 Max fold change at or above threshold 2 18.5324089313722 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776570_at SPAC20H4.11c.S1 --- 18.5230186031318 --- --- --- --- 10.9508857727051 7.12105798721313 0.591204166412354 2.7545485496521 0.194580003619194 0.171387001872063 0.805419981479645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20H4.11c /GEN=rho5 /DEF=GTPase --- --- --- --- --- --- SPAC20H4.11c // |rho5||GTPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -9.8773249769552 -1.53781724462418 -3.05091126452088 -18.5230186031318 -3.97556462531335 Max fold change at or above threshold 3 18.5230186031318 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777303_at SPCC1795.07.S1 --- 18.5193768412296 --- --- --- --- 3.0360643863678 0.595528125762939 3.93090486526489 4.95968723297119 0.533936023712158 0.828612983226776 0.24609400331974 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1795.07 /DEF=mitochondrial ribosomal protein s13 --- --- --- --- --- --- SPCC1795.07 // |||mitochondrial ribosomal protein S13|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.20049132346755 -5.09810411133522 -18.5193768412296 1.29473699007011 1.63359092621376 Max fold change at or above threshold 3 18.5193768412296 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771771_at SPBC354.01.S1 --- 18.5126323897542 --- --- --- --- 4.33093166351318 0.950960397720337 1.40668308734894 0.631824254989624 0.5 0.870360970497131 0.718017578125 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC354.01 /GEN=gtp1 /DEF=GTP binding --- --- --- --- --- --- SPBC354.01 // |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -18.5126323897542 -4.55427131760207 -7.11696375950863 -3.07882543158697 -6.85464609709279 Max fold change at or above threshold 1 18.5126323897542 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769632_at SPBC2A9.12.S1 --- 18.4636402130127 --- --- --- --- 1.84636402130127 7.80548477172852 2.22351002693176 0.068281851708889 0.5 0.366210997104645 0.5 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2A9.12 /GEN=orc6 /DEF=origin recognition complex (subunit 6) --- --- --- --- --- --- SPBC2A9.12 // |orc6|SPBC2D10.02|origin recognition complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.46056383787014 4.22748964000469 1.19880731570882 1.20426416528886 -18.4636402130127 Max fold change at or above threshold 1 18.4636402130127 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779486_at SPAC1D4.12.S1 --- 18.4614468373702 --- --- --- --- 0.712585031986237 13.1553506851196 8.23351001739502 4.27069664001465 0.753906011581421 0.149657994508743 0.398925989866257 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1D4.12 /GEN=rad15 /DEF=transcription factor TFIIH complex --- --- --- --- --- --- SPAC1D4.12 // |rad15|rhp3|transcription factor TFIIH complex subunit Rad15|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 12.2667363044662 18.4614468373702 8.70350549756913 11.5544245918907 5.99324494384992 Max fold change at or above threshold 3 18.4614468373702 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771439_at SPAC17A2.08c.S1 --- 18.445407049539 --- --- --- --- 0.247009769082069 4.5561957359314 0.482454180717468 0.321057617664337 0.850341975688934 0.334473013877869 0.850341975688934 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A2.08c /DEF=sequence orphan --- --- --- --- --- --- SPAC17A2.08c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.08126873739086 18.445407049539 -1.97497490258294 1.95317854233195 1.29977700419478 Max fold change at or above threshold 1 18.445407049539 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777494_at SPBC4F6.12.S1 --- 18.4424613435342 --- --- --- --- 6.01237440109253 1.05364596843719 2.34632134437561 1.448322057724 0.533936023712158 0.904784977436066 0.533936023712158 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4F6.12 /DEF=LIM domain --- --- --- --- --- --- SPBC4F6.12 // |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -4.0670376627617 -5.70625673252496 -18.4424613435342 -2.56246844257069 -4.15126895915734 Max fold change at or above threshold 1 18.4424613435342 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780078_at SPCC1682.15.S1 --- 18.4381684643238 --- --- --- --- 8.5235652923584 5.56377553939819 1.52259588241577 1.01091742515564 0.149657994508743 0.567627012729645 0.432372987270355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1682.15 /DEF=PXA domain --- --- --- --- --- --- SPCC1682.15 // |||PXA domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.23301482724995 -1.53197504680075 -18.4381684643238 -5.59804830079718 -8.43151485992649 Max fold change at or above threshold 2 18.4381684643238 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778244_at SPAC6G9.09c.S1 --- 18.4090163790085 --- --- --- --- 0.54494971036911 2.2502133846283 10.0319881439209 2.51674628257751 0.780517995357513 0.567627012729645 0.129638999700546 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G9.09c /GEN=rpl24 /DEF=60S ribosomal protein L24 --- --- --- --- --- --- SPAC6G9.09c // |rpl24||60S ribosomal protein L24|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.69019404360116 4.1292129196732 2.76439543992233 18.4090163790085 4.61830923971471 Max fold change at or above threshold 2 18.4090163790085 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770386_at SPAC2G11.15c.S1 --- 18.4028993291893 --- --- --- --- 5.52798175811768 2.41164445877075 0.76043838262558 0.30038645863533 0.533936023712158 0.432372987270355 0.665526986122131 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2G11.15c /DEF=RNA methyltransferase activity (predicted) --- --- --- --- --- --- D89174 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1004. // gb // 11 // --- /// SPAC2G11.15c // ||SPAC521.01c|RNA methyltransferase activity |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.50308187705891 -2.29220428326958 -1.32553775495667 -7.26946703956619 -18.4028993291893 Max fold change at or above threshold 1 18.4028993291893 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775033_at SPBC32F12.01c.S1 --- 18.3890080512017 --- --- --- --- 0.267410933971405 0.946042418479919 0.634887158870697 4.91742181777954 0.828612983226776 0.953857004642487 0.953857004642487 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32F12.01c /DEF=sphingomyelinase family --- --- --- --- --- --- SPBC32F12.01c // ||SPBC685.10c|sphingomyelinase family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 8.89853470847856 3.5377851026132 2.81277439806563 2.37420044663764 18.3890080512017 Max fold change at or above threshold 1 18.3890080512017 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773174_at SPAC15A10.16.S1 --- 18.3880089074362 --- --- --- --- 0.222641587257385 0.187318056821823 0.203348085284233 0.28383681178093 0.919434010982513 0.976073980331421 0.994140982627869 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15A10.16 /GEN=fat1 /DEF=actin-binding protein (predicted) --- --- --- --- --- --- SPAC15A10.16 // |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein 3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 18.3880089074362 -1.18857514878644 1.41628784897409 -1.09487919173758 1.27485981068218 Max fold change at or above threshold 0 18.3880089074362 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772591_at SPBC31F10.07.S1 --- 18.3822660888292 7.17034959793091 3.11403723061085 --- --- --- --- 0.442415624856949 8.13260173797607 6.20809745788574 5.78565883636475 0.533936023712158 0.129638999700546 0.165771484375 0.166259765625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31F10.07 /DEF=similar to S. cerevisiae YCL034W --- --- --- --- --- --- SPBC31F10.07 // |||actin cortical patch component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No cerevisiae_gene 5.69874863632582 18.3822660888292 3.24049874014862 14.0322744249665 13.0774288051772 Max fold change at or above threshold 3 18.3822660888292 Max fold change at or above threshold -1.42612654521984 0.907426027904645 0.323443813594832 0.195256703720367 5.14219341427088 3.29548440505989 0.640871344106601 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770013_at YFL052W.S1 Hypothetical protein 18.3720842762892 1.22834122180939 6.88544881343842 --- --- --- 3677 // DNA binding // inferred from sequence similarity 11.1625833511353 1.38232779502869 1.07435464859009 2.60831427574158 0.24609400331974 0.780517995357513 0.725830018520355 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL052W /GEN=DAK2 /DB_XREF=GI:14318467 /SEG=NC_001138:+28232,29629 /DEF=Hypothetical ORF /NOTE=Yfl052wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: DNA binding [goid GO:0003677] [evidence ISS] [pmid 11353088]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001842 // YFL052W SGDID:S0001842, Chr VI from 28232-29629, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018554 // cdna:GeneFinder chromosome:SGD1:VI:28232:29629:1 // ensembl // 11 // --- /// GENSCAN00000023197 // cdna:Genscan chromosome:SGD1:VI:28232:29629:1 // ensembl // 11 // --- /// YFL052W // cdna:known chromosome:SGD1:VI:28232:29629:1 gene:YFL052W // ensembl // 11 // --- --- No cerevisiae_gene -5.44990190721612 -8.07520719128968 -18.3720842762892 -10.3900358841322 -4.27961594005446 Max fold change at or above threshold 2 18.3720842762892 Max fold change at or above threshold 1.48553987800866 -0.559154311179402 -0.623540246632365 -0.302845320196891 4.0568950176239 4.78323634302999 1.17903872844891 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775572_at SPAC19D5.05c.S1 --- 18.3407517338032 --- --- --- --- 5.98873805999756 0.326526314020157 1.42598831653595 6.53982257843018 0.00805663969367743 0.633789002895355 0.432372987270355 0.149657994508743 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19D5.05c /DEF=ribonucleoprotein (RNP) complex (PMID 12068309) (predicted) --- --- --- --- --- --- SPAC19D5.05c // |||ribonucleoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.29922409409973 -18.3407517338032 1.25975345429449 -4.19971046785682 1.09202014062255 Max fold change at or above threshold 2 18.3407517338032 Max fold change at or above threshold PAAPAA No 4 0 PAAA 3 1 0 No No x = 1
1770960_at SPCC126.15c.S1 --- 18.3405595160644 --- --- --- --- 7.52263832092285 22.3721332550049 8.59907722473145 0.797623515129089 0.219482004642487 0.129638999700546 0.24609400331974 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC126.15c /GEN=sec65 /DEF=protein signal sequence binding activity (predicted) --- --- --- --- --- --- SPCC126.15c // |sec65||signal recognition particle subunit Sec65 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- U97392 // gb // 5 // Cross Hyb Matching Probes No No -18.3405595160644 2.97397432929626 -13.8071794223253 1.14309326833043 -9.43131462179293 Max fold change at or above threshold 3 18.3405595160644 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777125_at SPAC13D6.05.S1 --- 18.316539245831 --- --- --- --- 7.92353820800781 8.65585231781006 9.70263195037842 3.24278998374939 0.24609400331974 0.334473013877869 0.171387001872063 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13D6.05 /GEN=alp11 /DEF=localization cytoskeleton --- --- --- --- --- --- SPAC13D6.05 // |alp11|SPAC4G9.01|tubulin specific chaperone |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -18.316539245831 1.09242261355693 1.14532657907052 1.22453273975162 -2.44343242939416 Max fold change at or above threshold 4 18.316539245831 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1770029_at SPAC8C9.16c.S1 --- 18.3133048115811 --- --- --- --- 10.1920967102051 1.05438983440399 1.32282769680023 0.556540548801422 0.014160200022161 0.5 0.624755859375 0.239013671875 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8C9.16c /DEF=conserved eukaryotic family --- --- --- --- --- --- SPAC8C9.16c // |||conserved eukaryotic family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -5.59111986533836 -9.66634576476764 -1.72697585136537 -7.70478024829582 -18.3133048115811 Max fold change at or above threshold 1 18.3133048115811 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1772911_at SPCC1682.09c.S1 --- 18.3103005886255 --- --- --- --- 3.09715914726257 1.22544097900391 3.57992219924927 0.169148460030556 0.633789002895355 0.696289002895355 0.696289002895355 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1682.09c /DEF=mitochondrial carrier --- --- --- --- --- --- SPCC1682.09c // |||guanine nucleotide transporter|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -15.3285931109148 -2.52738336674532 -5.22209589507108 1.15587285929862 -18.3103005886255 Max fold change at or above threshold 2 18.3103005886255 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773504_at SPBC8D2.09c.S1 --- 18.307220223917 --- --- --- --- 6.87050151824951 1.18285393714905 3.33780169487 1.2430282831192 0.366210997104645 0.888427972793579 0.466064006090164 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8D2.09c /DEF=U2 b-like spliceosomal protein --- --- --- --- --- --- SPBC8D2.09c // |||U2 snRNP protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -18.307220223917 -5.80841074495555 -1.39568574456035 -2.05839116470253 -5.52722863313212 Max fold change at or above threshold 2 18.307220223917 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773131_at SPBC21B10.10.S1 --- 18.3066570309605 --- --- --- --- 4.79690980911255 6.80911684036255 3.10795044898987 7.1192774772644 0.0805663987994194 0.274170011281967 0.432372987270355 0.00439453125 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21B10.10 /GEN=rps402 /DEF=40S ribosomal protein S4 --- --- --- --- --- --- SPBC21B10.10 // |rps402|rps4-2|40S ribosomal protein S4|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.45339267413512 1.41947985501572 -18.3066570309605 -1.54343188150622 1.48413828080322 Max fold change at or above threshold 4 18.3066570309605 Max fold change at or above threshold AAAAAP No 3 0 AAAP 3 1 0 No No x = 1
1770819_at SPAC20G8.10c.S1 --- 18.3006437372107 --- --- --- --- 12.4976778030396 9.907546043396 5.9840350151062 0.682909190654755 0.0676269978284836 0.0676269978284836 0.0676269978284836 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20G8.10c /DEF=involved in autophagy (predicted) --- --- --- --- --- --- SPAC20G8.10c // ||SPAC3A12.01c|beclin family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -17.9972653416821 -1.26143020161587 -1.3790526511855 -2.08850345485783 -18.3006437372107 Max fold change at or above threshold 3 18.3006437372107 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779192_at SPAC17A2.06c.S1 --- 18.2923395270848 --- --- --- --- 5.18081569671631 3.55798506736755 1.8037520647049 3.02985024452209 0.129638999700546 0.326171875 0.366210997104645 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A2.06c /DEF=WD repeat protein --- --- --- --- --- --- SPAC17A2.06c // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.62208098940605 -1.45610945482395 -18.2923395270848 -2.87224380672513 -1.70992467567766 Max fold change at or above threshold 3 18.2923395270848 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776768_at YLR377C.S1 Fructose-1,6-bisphosphatase, key regulatory enzyme in the gluconeogenesis pathway, required for glucose metabolism 18.2887234716694 4291.68957519531 250.535369873047 FBP1 6094 // gluconeogenesis // traceable author statement /// 6094 // gluconeogenesis // inferred from mutant phenotype 5829 // cytosol // inferred from direct assay 42132 // fructose-bisphosphatase activity // inferred from mutant phenotype 253.409332275391 3948.84594726563 4634.533203125 247.661407470703 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR377C /GEN=FBP1 /DB_XREF=GI:6323409 /SEG=NC_001144:-873745,874791 /DEF=Fructose-1,6-bisphosphatase, required for glucose metabolism /NOTE=Fbp1p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: fructose-bisphosphatase activity [goid GO:0042132] [evidence IMP] [pmid 2841162]; go_process: gluconeogenesis [goid GO:0006094] [evidence TAS] [pmid 10328823] --- --- --- --- --- --- S0004369 // FBP1 SGDID:S0004369, Chr XII from 874791-873745, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018103 // cdna:Genscan chromosome:SGD1:XII:873745:874791:-1 // ensembl // 11 // --- /// GENEFINDER00000024869 // cdna:GeneFinder chromosome:SGD1:XII:873745:874791:-1 // ensembl // 11 // --- /// YLR377C // cdna:known chromosome:SGD1:XII:873745:874791:-1 gene:YLR377C // ensembl // 11 // --- --- No cerevisiae_gene -1.7568822824422 15.5828749944152 1.14311097066531 18.2887234716694 -1.02320880295154 Max fold change at or above threshold 4 18.2887234716694 Max fold change at or above threshold -0.858635243282225 0.713960870405347 1.00575565032269 -0.861081277445808 2271.11247253418 2349.8955534901 1.03468920271835 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772724_at SPCC126.08c.S1 --- 18.2823586948188 --- --- --- --- 0.467638343572617 0.416092395782471 0.375054180622101 4.06274938583374 0.805419981479645 0.696289002895355 0.696289002895355 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC126.08c /DEF=lectin (predicted) --- --- --- --- --- --- SPCC126.08c // |||lectin |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 7.00604989797238 -1.12388101371863 18.2823586948188 -1.24685543511859 8.68780210535251 Max fold change at or above threshold 1 18.2823586948188 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779798_at SPBC1778.09.S1 --- 18.2811505873783 --- --- --- --- 4.35939979553223 16.4846954345703 7.03199529647827 9.4512882232666 0.366210997104645 0.04443359375 0.111571997404099 0.0239257998764515 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1778.09 /DEF=TBC domain protein --- --- --- --- --- --- SPBC1778.09 // |||GTPase activating protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.10795515450995 3.78141400370409 -18.2811505873783 1.61306501497869 2.16802511046425 Max fold change at or above threshold 4 18.2811505873783 Max fold change at or above threshold AAPAAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1777866_at SPBC2A9.11c.S1 --- 18.272972870315 --- --- --- --- 0.602582931518555 6.72243499755859 11.0109815597534 6.81722068786621 0.805419981479645 0.219482004642487 0.171387001872063 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2A9.11c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC2A9.11c // ||SPBC2D10.01c|conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.7963342797545 11.1560328810137 6.65091935795294 18.272972870315 11.3133318773008 Max fold change at or above threshold 3 18.272972870315 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770464_at SPCC24B10.05.S1 --- 18.2711227924927 --- --- --- --- 0.199134886264801 1.06536734104156 0.16860243678093 0.148491516709328 0.969726979732513 0.870360970497131 0.953857004642487 0.989257991313934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC24B10.05 /GEN=tim9 /DEF=TIM22 inner membrane protein import complex --- --- --- --- --- --- SPCC24B10.05 // |tim9||TIM22 inner membrane protein import complex|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 18.2711227924927 5.34997840421033 6.76019933377812 -1.1810913891093 -1.34105227475458 Max fold change at or above threshold 0 18.2711227924927 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769639_at SPAC343.05.S1 --- 18.2702535136615 --- --- --- --- 8.71552562713623 7.33729457855225 1.24198496341705 0.792155265808105 0.432372987270355 0.326416015625 0.696289002895355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC343.05 /GEN=vma1 /DEF=V-type ATPase --- --- --- --- --- --- SPAC343.05 // |vma1||V-type ATPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.76268737279991 -1.18783913250706 -18.2702535136615 -7.01741638091764 -11.002294630012 Max fold change at or above threshold 2 18.2702535136615 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773690_at SPCC794.15.S1 --- 18.261007411415 --- --- --- --- 0.238740995526314 0.911613583564758 4.3596510887146 4.26117372512817 0.753906011581421 0.366210997104645 0.334473013877869 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC794.15 /DEF=dubious --- --- --- --- --- --- SPCC794.15 // |||dubious|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 2.92515877122918 3.81842080181944 -1.08734919746287 18.261007411415 17.8485212216455 Max fold change at or above threshold 2 18.261007411415 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780111_at SPBC1703.06.S1 --- 18.2609358687513 --- --- --- --- 2.69007730484009 0.305407136678696 2.5785665512085 0.354756832122803 0.567627012729645 0.976073980331421 0.533936023712158 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1703.06 /GEN=pof10 /DEF=F-box protein --- --- --- --- --- --- SPBC1703.06 // |pof10||F-box protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -18.2609358687513 -8.80816779232697 -14.5126008097337 -1.04324524941167 -7.58287666721776 Max fold change at or above threshold 2 18.2609358687513 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771216_at SPAC22F3.11c.S1 --- 18.2349536279037 --- --- --- --- 0.261203587055206 3.76934766769409 0.515617787837982 3.40800881385803 0.567627012729645 0.59326171875 0.432372987270355 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F3.11c /DEF=hypothetical protein --- --- --- --- --- --- SPAC22F3.11c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 18.2349536279037 14.4306887596357 5.16440227653757 1.97400730078414 13.0473277655936 Max fold change at or above threshold 2 18.2349536279037 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770946_at SPCC70.08c.S1 --- 18.2317117128474 --- --- --- --- 0.425554364919662 7.75858449935913 1.4926735162735 4.88881826400757 0.94140625 0.1884765625 0.466064006090164 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC70.08c /DEF=SAM dependent methyltransferase --- --- --- --- --- --- SPCC70.08c // |||SAM dependent methyltransferase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 2.74833014513733 18.2317117128474 3.23229220613009 3.5075977109418 11.4881168353907 Max fold change at or above threshold 2 18.2317117128474 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774790_at SPAC17D4.04.S1 --- 18.2214221576525 --- --- --- --- 4.36916399002075 2.18709087371826 1.24854397773743 4.7859263420105 0.533936023712158 0.7744140625 0.828612983226776 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17D4.04 /DEF=tRNA methyltransferase (predicted) --- --- --- --- --- --- SPAC17D4.04 // ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 9 // --- --- No No -1.47122735106851 -1.99770573894479 -18.2214221576525 -3.49940736403888 1.09538720747073 Max fold change at or above threshold 2 18.2214221576525 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773199_at SPBC25H2.10c.S1 --- 18.2190086851191 --- --- --- --- 4.75236511230469 3.06076192855835 4.88041019439697 0.619464337825775 0.303710997104645 0.665526986122131 0.432372987270355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25H2.10c /DEF=dihydropteroate synthase (predicted) (ISS) --- --- --- --- --- --- SPBC25H2.10c // |||tRNA acetyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.40221048740211 -1.55267388422565 -18.2190086851191 1.02694344375199 -7.67173317673905 Max fold change at or above threshold 3 18.2190086851191 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769410_at SPAC19G12.04.S1 --- 18.2098192305933 --- --- --- --- 0.354470252990723 6.45483922958374 0.453771233558655 0.486075580120087 0.780517995357513 0.567627012729645 0.919434010982513 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19G12.04 /DEF=ureidoglycolate hydrolase (predicted) --- --- --- --- --- --- SPAC19G12.04 // |||ureidoglycolate hydrolase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.35014151616002 18.2098192305933 -1.36950355638857 1.28013910823296 1.37127326205511 Max fold change at or above threshold 1 18.2098192305933 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778058_at SPBC106.19.S1 --- 18.1986683990131 --- --- --- --- 0.530783534049988 9.14933681488037 9.65955352783203 0.251822978258133 0.533936023712158 0.0952147990465164 0.111571997404099 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC106.19 /DEF=hypothetical protein --- --- --- --- --- --- SPBC106.19 // ||SPBC582.01|sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 12.209045858146 17.2374164380516 1.91790451956021 18.1986683990131 -2.1077645007673 Max fold change at or above threshold 2 18.1986683990131 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778255_at SPAC15E1.06.S1 --- 18.1934549828847 --- --- --- --- 0.336936116218567 6.13003206253052 0.240636691451073 0.962279915809631 0.942138671875 0.171387001872063 0.665526986122131 0.688720703125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15E1.06 /GEN=vps29 /DEF=metallophosphatase --- --- --- --- --- --- SPAC15E1.06 // |vps29||metallophosphatase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.53370935838932 18.1934549828847 1.43513210150632 -1.40018595745643 2.85597141265026 Max fold change at or above threshold 1 18.1934549828847 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776668_at SPBP4H10.08.S1 --- 18.1395264888698 --- --- --- --- 0.432943612337112 7.85339212417603 0.28642413020134 0.271429806947708 0.969726979732513 0.24609400331974 0.753906011581421 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP4H10.08 /GEN=qcr10 /DEF=ubiquinol-cytochrome-c reductase complex subunit 11 --- --- --- --- --- --- SPBP4H10.08 // |qcr10||ubiquinol-cytochrome-c reductase complex subunit 11|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.31351291480218 18.1395264888698 12.7224971513736 -1.5115472709397 -1.59504815335377 Max fold change at or above threshold 1 18.1395264888698 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773630_at YHR185C.S1 Sporulation protein required for prospore membrane formation at selected spindle poles, ensures functionality of all four spindle pole bodies of a cell during meiosis II; not required for meiotic recombination or meiotic chromosome segregation 18.0809108507252 9.91801810264587 2.21875596046448 PFS1 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype --- --- 0.755358457565308 13.6575689315796 6.17846727371216 3.68215346336365 0.828612983226776 0.0805663987994194 0.24609400331974 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR185C /GEN=PFS1 /DB_XREF=GI:6321979 /SEG=NC_001140:-474625,475338 /DEF=Prospore Formation at Selected spindle poles /NOTE=Pfs1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: spore wall assembly (sensu Fungi) [goid GO:0030476] [evidence IMP] [pmid 11553705] --- --- --- --- --- --- S0001228 // PFS1 SGDID:S0001228, Chr VIII from 475339-474626, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016708 // cdna:Genscan chromosome:SGD1:VIII:474626:475339:-1 // ensembl // 11 // --- /// YHR185C // cdna:known chromosome:SGD1:VIII:474626:475339:-1 gene:YHR185C // ensembl // 11 // --- --- No cerevisiae_gene 7.81813854730899 18.0809108507252 3.06237952555439 8.17951690595584 4.87471004856696 Max fold change at or above threshold 3 18.0809108507252 Max fold change at or above threshold -0.961879378274102 1.37395789726059 0.0199291069889177 -0.432007625975406 6.06838703155518 5.52359130884272 0.910223965630478 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771342_at SPAC607.06c.S1 --- 18.0733879146258 --- --- --- --- 7.98062467575073 15.3115072250366 15.4957304000854 0.441567718982697 0.030273400247097 0.0375977009534836 0.0676269978284836 0.696289002895355 P P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC607.06c /DEF=metallopeptidase --- --- --- --- --- --- D89196 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1090. // gb // 9 // --- /// SPAC607.06c // |||metallopeptidase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.54930935254429 1.91858505406988 -1.47132868325505 1.94166885797418 -18.0733879146258 Max fold change at or above threshold 3 18.0733879146258 Max fold change at or above threshold PAPAAA No 4 0 PPAA 2 2 0 No No 1 < x = 2
1774167_at YAR033W.S1 Putative integral membrane protein, involved in vesicle formation; forms complex with Mst28p; member of DUP240 gene family; binds COPI and COPII vesicles /// Putative integral membrane protein, involved in vesicle formation; forms complex with Mst27p; member of DUP240 gene family; binds COPI and COPII vesicles 18.0433108631898 1.9982878267765 0.179664045572281 MST27 /// MST28 16050 // vesicle organization and biogenesis // inferred from genetic interaction /// 16050 // vesicle organization and biogenesis // inferred from physical interaction 5783 // endoplasmic reticulum // inferred from direct assay /// 5794 // Golgi apparatus // inferred from direct assay /// 16021 // integral to membrane // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from physical interaction /// 5794 // Golgi apparatus // inferred from physical interaction 5515 // protein binding // inferred from direct assay 0.303786337375641 3.11507034301758 0.881505310535431 0.0555417537689209 0.780517995357513 0.665526986122131 0.805419981479645 0.884033203125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR033W /GEN=MST28 /DB_XREF=GI:6319336 /SEG=NC_001133:+188103,188807 /DEF=Putative integral membrane protein, involved in vesicle formation; forms complex with Mst27p; member of DUP240 gene family; binds COPI and COPII vesicles /NOTE=Mst28p; go_component: Golgi apparatus [goid GO:0005794] [evidence IPI] [pmid 12925749]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IPI] [pmid 12925749]; go_component: integral to membrane [goid GO:0016021] [evidence IDA] [pmid 12925749]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 12925749]; go_process: vesicle organization and biogenesis [goid GO:0016050] [evidence IGI,IPI] [pmid 12925749] --- --- --- --- --- S0000079 // span:45-67,74-96 // numtm:2 /// S0003019 // span:45-67,74-96 // numtm:2 S0000079 // MST28 SGDID:S0000079, Chr I from 188101-188805, Verified ORF // sgd // 11 // --- /// GENSCAN00000020394 // cdna:Genscan chromosome:SGD1:I:188101:188805:1 // ensembl // 11 // --- /// YAR033W // cdna:known chromosome:SGD1:I:188101:188805:1 gene:YAR033W // ensembl // 11 // --- --- No cerevisiae_gene 18.0433108631898 10.2541489190335 3.28272963094276 2.90172796495921 -3.03786337375641 Max fold change at or above threshold 1 18.0433108631898 Max fold change at or above threshold -0.563123484642452 1.45307750426346 -0.148794102532051 -0.741159917088954 1.08897593617439 1.39434710185688 1.28042049005717 APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773905_at SPBC12D12.05c.S1 --- 18.0430404341164 --- --- --- --- 6.13624429702759 9.82598114013672 4.17699384689331 0.34008926153183 0.24609400331974 0.0676269978284836 0.334473013877869 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12D12.05c /DEF=mitochondrial carrier --- --- --- --- --- --- SPBC12D12.05c // |||mitochondrial transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.71047019651888 1.60130214256568 -2.54874990579817 -1.4690575380166 -18.0430404341164 Max fold change at or above threshold 3 18.0430404341164 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772811_at SPBC115.01c.S1 --- 18.0221779130751 --- --- --- --- 15.9451704025269 9.08628368377686 3.00746059417725 0.884752690792084 0.0461426004767418 0.0107421996071935 0.274170011281967 0.432372987270355 P P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC115.01c /DEF=exosome (RNase complex) --- --- --- --- --- --- SPBC115.01c // |||exosome |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.62189845583396 -1.75486160871207 -2.05498187726688 -5.3018717629745 -18.0221779130751 Max fold change at or above threshold 3 18.0221779130751 Max fold change at or above threshold PPPPAA No 4 0 PPAA 2 2 0 No No 1 < x = 2
1778942_at SPBC28F2.07.S1 --- 18.0131306875774 --- --- --- --- 8.80016803741455 8.01448535919189 1.75652003288269 0.488541841506958 0.533936023712158 0.665526986122131 0.780517995357513 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC28F2.07 /GEN=sfr1 /DEF=involved in DNA repair (PMID 14663140) --- --- --- --- --- --- AY275538 // Schizosaccharomyces pombe DNA repair protein Dds20 (dds20) mRNA, complete cds. // gb // 11 // --- /// SPBC28F2.07 // |sfr1|dds20|Swi five-dependent recombination repair protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- AY738531 // gb // 2 // Negative Strand Matching Probes No No -4.50566430984616 -1.09803282968401 -2.42919207236312 -5.01000152157233 -18.0131306875774 Max fold change at or above threshold 2 18.0131306875774 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770180_at SPCC1672.01.S1 --- 18.0047368661127 --- --- --- --- 0.400508731603622 7.21105432510376 4.43633365631104 4.27048015594482 0.888427972793579 0.149657994508743 0.171387001872063 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1672.01 /DEF=histidinol-phosphatase (predicted) --- --- --- --- --- --- SPCC1672.01 // |||histidinol-phosphatase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.27425076697451 18.0047368661127 8.51997809632868 11.0767464133631 10.6626393358416 Max fold change at or above threshold 3 18.0047368661127 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779022_at SPBC15D4.10c.S1 --- 17.9929270333848 --- --- --- --- 11.5207195281982 2.68681645393372 7.13876628875732 5.07100820541382 0.5 0.828612983226776 0.601073980331421 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC15D4.10c /DEF=zinc finger protein --- --- --- --- --- --- SPBC15D4.10c // |amo1||nuclear rim protein Amo1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -17.9929270333848 -4.28786994784515 -7.08771229884872 -1.61382500311601 -2.27187948855983 Max fold change at or above threshold 4 17.9929270333848 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772602_at SPAC25G10.01.S1 --- 17.9785281449411 --- --- --- --- 5.237229347229 4.35129022598267 6.02374839782715 0.545652687549591 0.129638999700546 0.366210997104645 0.0107421996071935 0.665526986122131 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25G10.01 /DEF=RNA-binding protein --- --- --- --- --- --- SPAC25G10.01 // ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -17.9785281449411 -1.20360377617567 -1.61036939583433 1.15017846239907 -9.5981005257177 Max fold change at or above threshold 3 17.9785281449411 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1775455_at SPAC29B12.11c.S1 --- 17.9724022775632 --- --- --- --- 10.4393835067749 10.7638320922852 11.5578508377075 2.83833527565002 0.1884765625 0.194580003619194 0.171387001872063 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29B12.11c /DEF=orthologue of human WW domain binding protein-2 --- --- --- --- --- --- SPAC29B12.11c // |||human WW domain binding protein-2 ortholog|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -17.9724022775632 1.03107928598463 -4.99484817975178 1.10713921279037 -3.67799519539992 Max fold change at or above threshold 4 17.9724022775632 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-M57289-1_s_at AFFX-Sc-M57289-1 --- 17.9620473515106 --- --- --- --- 0.345913678407669 1.18170619010925 2.69957828521729 0.800929844379425 0.850341975688934 0.696289002895355 0.466064006090164 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL M57289 /FEA=CDS /DB_XREF=AAA45864.1 GI:330320 /GEN=VP16 --- --- --- --- --- --- AFFX-Sc-M57289-1 // --- // affx // --- // --- --- No No 14.5774065974512 3.41618809510209 17.9620473515106 7.804196404271 2.31540379688457 Max fold change at or above threshold 1 17.9620473515106 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772246_at SPBC3B9.10.S1 --- 17.9559159016035 --- --- --- --- 0.389689981937408 6.99724054336548 2.54709458351135 0.559214949607849 0.753906011581421 0.398925989866257 0.4912109375 0.746337890625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B9.10 /GEN=vti1 /DEF=SNARE --- --- --- --- --- --- D89116 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0416. // gb // 10 // --- /// SPBC3B9.10 // |vti1||SNARE|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.59877481062287 17.9559159016035 -1.11012829810381 6.53620750230234 1.43502521370352 Max fold change at or above threshold 2 17.9559159016035 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773011_at SPAC1D4.04.S1 --- 17.9423723104698 --- --- --- --- 12.7004308700562 8.42279243469238 9.75428771972656 3.79660534858704 0.0676269978284836 0.219482004642487 0.111571997404099 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1D4.04 /GEN=cct2 /DEF=T-complex protein 1 (beta subunit) --- --- --- --- --- --- SPAC1D4.04 // |cct2||chaperonin-containing T-complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.56281992870988 -1.50786463854253 -17.9423723104698 -1.3020357031679 -3.3452070215259 Max fold change at or above threshold 4 17.9423723104698 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773717_at SPAC1805.16c.S1 --- 17.9308972523408 --- --- --- --- 6.83849239349365 5.42742490768433 1.92361068725586 2.71496868133545 0.111571997404099 0.334473013877869 0.466064006090164 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1805.16c /DEF=purine nucleoside phosphorylase (predicted) --- --- --- --- --- --- SPAC1805.16c // |||purine nucleoside phosphorylase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -14.2846337194999 -1.25998839409302 -17.9308972523408 -3.55502932001753 -2.51881078426655 Max fold change at or above threshold 3 17.9308972523408 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779226_at SPCC645.06c.S1 --- 17.9150594392485 --- --- --- --- 8.26632881164551 1.34984123706818 6.35075044631958 0.461417883634567 0.24609400331974 0.633789002895355 0.398925989866257 0.84521484375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC645.06c /GEN=rgf3 /DEF=localization cell division site (pers. comm. Jian-Qiu Wu and John R. Pringle) --- --- --- --- --- --- SPCC645.06c // |rgf3||RhoGEF|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.13213605970953 -6.12392671422588 -3.08804704815658 -1.30163023748415 -17.9150594392485 Max fold change at or above threshold 2 17.9150594392485 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775753_at SPBC660.11.S1 --- 17.9014248990629 --- --- --- --- 1.60914659500122 28.8060169219971 25.379373550415 3.53723669052124 0.888427972793579 0.24609400331974 0.129638999700546 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC660.11 /GEN=tcg1 /DEF=single-stranded telomeric binding protein (PMID 12519786) --- --- --- --- --- --- AY007252 // Schizosaccharomyces pombe single-stranded TG1-3 binding protein (tcg1) mRNA, complete cds. // gb // 11 // --- /// SPBC660.11 // |tcg1||single-stranded telomeric binding protein Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.37426173278512 17.9014248990629 3.7670727858651 15.7719462162462 2.19820661554988 Max fold change at or above threshold 3 17.9014248990629 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769402_at SPCC825.04c.S1 --- 17.9011775364474 --- --- --- --- 2.80297946929932 3.25387167930603 0.156580731272697 5.02399730682373 0.432372987270355 0.533936023712158 0.805419981479645 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC825.04c /DEF=N-acetyltransferase (predicted) --- --- --- --- --- --- SPCC825.04c // |||N-acetyltransferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -7.55886595934727 1.16086175976145 -1.2660569645233 -17.9011775364474 1.79237749039939 Max fold change at or above threshold 3 17.9011775364474 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778629_at SPBC359.03c.S1 --- 17.8750796318018 --- --- --- --- 8.03191184997559 0.449335724115372 5.89724922180176 3.34696388244629 0.0952147990465164 0.5 0.366210997104645 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC359.03c /DEF=amino acid permease family (predicted) --- --- --- --- --- --- SPBC359.03c // |||amino acid permease family |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.88603008735034 -17.8750796318018 -1.09625356959558 -1.3619759904808 -2.39976053882753 Max fold change at or above threshold 3 17.8750796318018 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776458_at SPAC144.13c.S1 --- 17.8469286895003 --- --- --- --- 6.43306159973145 0.689890205860138 5.51287651062012 1.54722821712494 0.194580003619194 0.828612983226776 0.466064006090164 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC144.13c /GEN=srw1 /DEF=Cdk inhibitor --- --- --- --- --- --- AB005589 // Schizosaccharomyces pombe mRNA for Srw1, complete cds. // gb // 11 // --- /// SPAC144.13c // |srw1|ste9|CDK inhibitor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -17.8469286895003 -9.32476145492001 -4.02717507989323 -1.16691559974882 -4.15779749136515 Max fold change at or above threshold 2 17.8469286895003 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775929_at SPAC17A5.06.S1 --- 17.8394416412364 --- --- --- --- 0.269278317689896 0.235768750309944 1.15917551517487 0.798513054847717 0.334473013877869 0.633789002895355 0.398925989866257 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A5.06 /GEN=ercc3sp /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPAC17A5.06 // |ercc3sp||transcription factor TFIIH complex ERCC-3 subunit|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 17.8394416412364 -1.14212896041523 12.7666208362344 4.30474880086627 2.96538192045338 Max fold change at or above threshold 0 17.8394416412364 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774479_at SPBC2A9.02.S1 --- 17.8241652639798 --- --- --- --- 12.9901390075684 3.04569292068481 5.26710653305054 4.0849781036377 0.24609400331974 0.725830018520355 0.303710997104645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2A9.02 /DEF=dyhydroflavanol-4-reductase (predicted) --- --- --- --- --- --- SPBC2A9.02 // |||conserved protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -17.8241652639798 -4.26508493989853 -4.00350527017636 -2.4662761092939 -3.17997763464156 Max fold change at or above threshold 4 17.8241652639798 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771221_at SPCC569.02c.S1 --- 17.8200776297003 --- --- --- --- 2.7271728515625 0.153039336204529 0.246394127607346 0.989468216896057 0.0676269978284836 0.953857004642487 0.888427972793579 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC569.02c /DEF=33896 domain --- --- --- --- --- --- SPCC569.02c // |||33896 domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.1332761011296 -17.8200776297003 -2.28747066692677 -11.0683354268432 -2.75620055803065 Max fold change at or above threshold 1 17.8200776297003 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778402_at SPAC22F8.03c.S1 --- 17.8032113156421 --- --- --- --- 0.537432193756104 9.56801891326904 1.227698802948 2.02039051055908 0.774169921875 0.567627012729645 0.780517995357513 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F8.03c /DEF=dubious --- --- --- --- --- --- SPAC22F8.03c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.3427631829946 17.8032113156421 -2.40499322074834 2.28437897322011 3.75934031126534 Max fold change at or above threshold 1 17.8032113156421 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778846_at SPBC11B10.06.S1 --- 17.8022733485354 --- --- --- --- 5.12002897262573 1.19786262512207 2.31522345542908 2.31913995742798 0.432372987270355 0.533936023712158 0.665526986122131 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11B10.06 /DEF=zinc finger protein --- --- --- --- --- --- SPBC11B10.06 // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.02341424835383 -4.27430396879105 -17.8022733485354 -2.21146212069489 -2.20772746216837 Max fold change at or above threshold 1 17.8022733485354 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773277_at SPAC664.12c.S1 --- 17.7939326449177 --- --- --- --- 7.10122346878052 3.01759386062622 0.988192081451416 0.399081170558929 0.149657994508743 0.45751953125 0.601073980331421 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC664.12c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC664.12c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.30734495541824 -2.35327343465195 -1.27707668722731 -7.18607606969541 -17.7939326449177 Max fold change at or above threshold 2 17.7939326449177 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770907_at SPBC11C11.05.S1 --- 17.7804078752707 --- --- --- --- 9.02104091644287 1.42021024227142 0.507358491420746 2.90976595878601 0.303710997104645 0.696289002895355 0.533936023712158 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11C11.05 /DEF=involved in cell wall biosynthesis (predicted) --- --- --- --- --- --- SPBC11C11.05 // |||KRE9 family cell wall biosynthesis protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.18358002093062 -6.35190526581121 -6.27909079692303 -17.7804078752707 -3.10026340407342 Max fold change at or above threshold 2 17.7804078752707 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775880_at SPBC11G11.02c.S1 --- 17.7778953845212 --- --- --- --- 0.919021189212799 16.3382625579834 9.47597026824951 4.74323558807373 0.725830018520355 0.018554700538516 0.194580003619194 0.24609400331974 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11G11.02c /GEN=end3 /DEF=actin cortical patch component (predicted) --- --- --- --- --- --- SPBC11G11.02c // |end3||actin cortical patch component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.33585080944679 17.7778953845212 4.24879092593065 10.3109377449352 5.16118196593119 Max fold change at or above threshold 3 17.7778953845212 Max fold change at or above threshold AMPAAA No 4 0 APAA 3 1 0 No No x = 1
1777977_at SPAPJ698.03c.S1 --- 17.7611735103467 --- --- --- --- 7.26604413986206 9.24717235565186 11.2520055770874 2.80635452270508 0.219482004642487 0.0239257998764515 0.018554700538516 0.052978515625 A P P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPJ698.03c /GEN=prp12 /DEF=involved in mRNA splicing (PMID ?) --- --- --- --- --- --- SPAPJ698.03c // |prp12|sap130|U2 snRNP-associated protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -17.7611735103467 1.27265568136604 -2.11468848171935 1.5485737989614 -2.58913978297305 Max fold change at or above threshold 4 17.7611735103467 Max fold change at or above threshold AAPMPM No 4 0 APPM 1 2 1 No No 1 < x = 2
1780132_at SPBC18E5.13.S1 --- 17.7601738445424 --- --- --- --- 4.93037176132202 3.99397420883179 2.13935351371765 0.861047387123108 0.149657994508743 0.274170011281967 0.334473013877869 0.822998046875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18E5.13 /DEF=translation initiation factor (predicted) --- --- --- --- --- --- SPBC18E5.13 // ||SPBC23G7.03|translation initiation factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.97141302688845 -1.23445257869207 -17.7601738445424 -2.30460825184254 -5.72601675012934 Max fold change at or above threshold 2 17.7601738445424 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772929_at SPBC13G1.06c.S1 --- 17.7528432865666 --- --- --- --- 7.27480554580688 3.37686419487 4.54838895797729 0.409782558679581 0.149657994508743 0.366210997104645 0.274170011281967 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13G1.06c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC13G1.06c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.20930326735432 -2.15430799878138 -11.3247791500295 -1.59942467828038 -17.7528432865666 Max fold change at or above threshold 3 17.7528432865666 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774294_at SPBC27B12.08.S1 --- 17.7329911846339 --- --- --- --- 7.94935703277588 0.448280662298203 4.50096940994263 2.33612394332886 0.0676269978284836 0.828612983226776 0.194580003619194 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC27B12.08 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC27B12.08 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -13.7354010986419 -17.7329911846339 -1.25905081476497 -1.76614331464146 -3.40279763643381 Max fold change at or above threshold 2 17.7329911846339 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773859_at YBR132C.S1 High affinity polyamine permease, preferentially uses spermidine over putrescine; expression is down-regulated by osmotic stress; plasma membrane carnitine transporter, also functions as a low-affinity amino acid permease 17.7307414707167 688.583465576172 57.5848445892334 AGP2 6631 // fatty acid metabolism // inferred from direct assay /// 6865 // amino acid transport // inferred from mutant phenotype /// 6970 // response to osmotic stress // inferred from direct assay /// 15846 // polyamine transport // inferred from mutant phenotype /// 15879 // carnitine transport // inferred from direct assay 5774 // vacuolar membrane // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // inferred from direct assay /// 5887 // integral to plasma membrane // inferred from direct assay 15171 // amino acid transporter activity // inferred from mutant phenotype /// 15203 // polyamine transporter activity // inferred from mutant phenotype /// 15226 // carnitine transporter activity // inferred from direct assay 46.0081977844238 561.407470703125 815.759460449219 69.161491394043 0.00122069998178631 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR132C /GEN=AGP2 /DB_XREF=GI:6319608 /SEG=NC_001134:-499608,501398 /DEF=Plasma membrane carnitine transporter, expression is down-regulated by osmotic stress; also functions as a low-affinity amino acid permease /NOTE=Agp2p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 10545096]; go_component: integral to plasma membrane [goid GO:0005887] [evidence IDA] [pmid 10545096]; go_component: vacuolar membrane [goid GO:0005774] [evidence IDA] [pmid 10545096]; go_function: amino acid transporter activity [goid GO:0015171] [evidence IMP] [pmid 14697254]; go_function: carnitine transporter activity [goid GO:0015226] [evidence IDA] [pmid 10545096]; go_process: amino acid transport [goid GO:0006865] [evidence IMP] [pmid 14697254]; go_process: carnitine transport [goid GO:0015879] [evidence IDA] [pmid 10545096]; go_process: fatty acid metabolism [goid GO:0006631] [evidence IDA] [pmid 10545096]; go_process: response to osmotic stress [goid GO:0006970] [evidence IDA] [pmid 12132580] --- --- --- --- --- S0000336 // span:93-115,125-147,164-186,201-223,230-252,284-306,327-346,380-402,429-448,458-480,504-526,536-555 // numtm:12 S0000336 // AGP2 SGDID:S0000336, Chr II from 501436-499646, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021247 // cdna:Genscan chromosome:SGD1:II:499646:501436:-1 // ensembl // 11 // --- /// GENEFINDER00000022239 // cdna:GeneFinder chromosome:SGD1:II:499646:501436:-1 // ensembl // 11 // --- /// YBR132C // cdna:known chromosome:SGD1:II:499646:501436:-1 gene:YBR132C // ensembl // 11 // --- --- No cerevisiae_gene 3.08697162279731 12.2023356214399 3.30173662998217 17.7307414707167 1.50324278551632 Max fold change at or above threshold 4 17.7307414707167 Max fold change at or above threshold -0.863145720592673 0.496980778741104 1.16820966785618 -0.802044726004607 373.084155082703 378.934807292672 1.01568185657381 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775306_at SPAC6B12.03c.S1 --- 17.7206833967988 --- --- --- --- 2.27623271942139 2.99076318740845 0.948253810405731 0.559220790863037 0.533936023712158 0.805419981479645 0.805419981479645 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6B12.03c /DEF=sequence orphan --- --- --- --- --- --- SPAC6B12.03c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -10.6591186256272 1.31390923339714 -17.7206833967988 -2.40044668889593 -4.07036497321301 Max fold change at or above threshold 1 17.7206833967988 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770160_at SPACUNK4.12c.S1 --- 17.6878228372767 --- --- --- --- 7.21026849746704 2.5995147228241 1.05459904670715 1.50975334644318 0.55908203125 0.533936023712158 0.7744140625 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPACUNK4.12c /DEF=peptidase family M16 --- --- --- --- --- --- SPACUNK4.12c // |||peptidase family M16|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -17.6878228372767 -2.77369788836351 -2.28358642744908 -6.83697611900955 -4.77579236002602 Max fold change at or above threshold 2 17.6878228372767 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779382_at SPAC23A1.17.S1 --- 17.6552951595545 --- --- --- --- 5.77072525024414 5.79624509811401 4.10729265213013 0.607103824615479 0.0561522990465164 0.366210997104645 0.030273400247097 0.696289002895355 M A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23A1.17 /DEF=adaptor protein (PMID 11901111) --- --- --- --- --- --- SPAC23A1.17 // |||homolog of Wiskott-Aldrich syndrome protein-interacting protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -17.6552951595545 1.00442229473129 -16.9836897874853 -1.40499490516005 -9.50533502881347 Max fold change at or above threshold 3 17.6552951595545 Max fold change at or above threshold MAAAPA No 4 0 MAPA 2 1 1 No No x = 1
1773689_at SPBC839.08c.S1 --- 17.6044759485656 --- --- --- --- 0.471452057361603 8.29966640472412 4.81523418426514 5.89382457733154 0.62548828125 0.0461426004767418 0.219482004642487 0.0952147990465164 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC839.08c /DEF=phosphatidylinositol glycan, class N (predicted) --- --- --- --- --- --- SPBC839.08c // |||pig-N |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 6.52786664598308 17.6044759485656 -1.60745652741845 10.2136242892071 12.5014293294535 Max fold change at or above threshold 3 17.6044759485656 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1772905_at SPAC1F8.03c.S1 --- 17.6007278011959 --- --- --- --- 0.752271950244904 13.2405338287354 12.6613988876343 2.33250045776367 0.822998046875 0.601073980331421 0.149657994508743 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F8.03c /GEN=str3 /DEF=membrane transporter --- --- --- --- --- --- SPAC1F8.03c // |str3||siderochrome-iron transporter Str3 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.22132196986474 17.6007278011959 5.5923871183562 16.8308799543999 3.10060804075484 Max fold change at or above threshold 2 17.6007278011959 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770676_at SPAC30.01c.S1 --- 17.566232403637 --- --- --- --- 5.28903579711914 1.21816658973694 5.95210027694702 0.93955135345459 0.219482004642487 0.567627012729645 0.111571997404099 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30.01c /GEN=sec72 /DEF=Sec7 domain --- --- --- --- --- --- SPAC30.01c // |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -3.04943983418746 -4.34180008028401 -17.566232403637 1.12536585216327 -5.62932060889716 Max fold change at or above threshold 2 17.566232403637 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778118_at SPAC22F3.13.S1 --- 17.5192152063636 --- --- --- --- 5.71359443664551 3.17552495002747 3.55083918571472 1.3547500371933 0.366210997104645 0.466064006090164 0.0676269978284836 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F3.13 /GEN=tsc1 /DEF=hamartin --- --- --- --- --- --- SPAC22F3.13 // |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -17.5192152063636 -1.7992598157971 -3.23659586674997 -1.6090828499448 -4.21745287306479 Max fold change at or above threshold 3 17.5192152063636 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776691_at SPBC16E9.11c.S1 --- 17.4658563770842 --- --- --- --- 3.87798857688904 8.75804138183594 12.8711204528809 4.78527784347534 0.466064006090164 0.24609400331974 0.0805663987994194 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16E9.11c /GEN=pub3 /DEF=ubiquitin-protein ligase (E3) --- --- --- --- --- --- AB001023 // Schizosaccharomyces pombe mRNA for ubiquitin protein ligase, partial cds. // gb // 9 // --- /// SPBC16E9.11c // |pub3||ubiquitin-protein ligase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -17.4658563770842 2.25839793186336 1.17183999004517 3.31901969221534 1.2339587259213 Max fold change at or above threshold 4 17.4658563770842 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779687_at SPBC18H10.06c.S1 --- 17.4656661570713 --- --- --- --- 7.04379987716675 7.13462972640991 1.29956924915314 2.83428859710693 0.665526986122131 0.533936023712158 0.805419981479645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18H10.06c /GEN=swd2 /DEF=SET1 complex (TAP) (PMID 12488447) --- --- --- --- --- --- SPBC18H10.06c // |swd2|swd2.1|WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -12.3142065558588 1.01289500707389 -17.4656661570713 -5.42010353181012 -2.48520912244315 Max fold change at or above threshold 3 17.4656661570713 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775788_at SPCC63.08c.S1 --- 17.4477493093529 --- --- --- --- 0.487976491451263 8.51409149169922 0.390076041221619 0.218192830681801 0.904784977436066 0.466064006090164 0.805419981479645 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC63.08c /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPCC63.08c // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.42670003873267 17.4477493093529 1.72076541425331 -1.25097786042702 -2.23644603686772 Max fold change at or above threshold 1 17.4477493093529 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771488_at SPCC1450.03.S1 --- 17.4251210344255 --- --- --- --- 5.80463171005249 7.37919473648071 7.47258949279785 0.545905292034149 0.194580003619194 0.5 0.219482004642487 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1450.03 /DEF=ribonucleoprotein (RNP) complex (predicted) --- --- --- --- --- --- SPCC1450.03 // |||ribonucleoprotein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.80644570102341 1.27125976376785 -17.4251210344255 1.28734945920114 -10.6330379916694 Max fold change at or above threshold 3 17.4251210344255 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775370_at SPAC5D6.09c.S1 --- 17.3960094771401 --- --- --- --- 0.478767216205597 1.21640408039093 8.32863903045654 0.584046602249146 0.870360970497131 0.919434010982513 0.171387001872063 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5D6.09c /DEF=GPRFUN34 family --- --- --- --- --- --- SPAC5D6.09c // |||GPR/FUN34 family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 10.1121388539712 2.54070044735179 3.10226818175084 17.3960094771401 1.21989681515356 Max fold change at or above threshold 1 17.3960094771401 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777521_at SPBC211.02c.S1 --- 17.3908871627261 --- --- --- --- 5.34447050094604 8.40110683441162 0.811887621879578 0.307314425706863 0.432372987270355 0.171387001872063 0.780517995357513 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC211.02c /GEN=cwf3 /DEF=nineteen complex (Ntc) (putative) (PMID 12088152) --- --- --- --- --- --- SPBC211.02c // |cwf3|syf1|nineteen complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.31866528307703 1.57192500789826 -4.99407530501535 -6.58277125665891 -17.3908871627261 Max fold change at or above threshold 2 17.3908871627261 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-TagF_at AFFX-r2-TagF --- 17.3850485149111 --- --- --- --- 6.87636756896973 11.4589862823486 2.0517885684967 9.26062488555908 0.171387001872063 0.24609400331974 0.398925989866257 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Clone 76C7, synthetic insert (660 bp)+ poly A tail (21 bp), target sequence 1-660 --- --- --- --- --- --- AFFX-r2-TagF // --- // unknown // --- // --- /// AFFX-r2-TagF // --- // unknown // --- // --- /// AFFX-r2-TagF // --- // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-TagF // --- // unknown // --- // --- /// AFFX-r2-TagF // --- // affx // --- // --- /// AFFX-r2-TagF // --- // affx // --- // --- /// AFFX-r2-TagF // --- // affx // --- // --- /// AFFX-r2-TagF // --- // affx // --- // --- /// AFFX-r2-TagF // --- // affx // --- // --- /// AFFX-r2-TagF // --- // affx // --- // --- /// AFFX-r2-TagF // --- // affx // --- // --- /// AFFX-r2-TagF // --- // affx // --- // --- /// AFFX-r2-TagF // --- // affx // --- // --- /// AFFX-r2-TagF // --- // affx // --- // --- /// AFFX-r2-TagF // --- // affx // --- // --- /// AFFX-r2-TagF // --- // affx // --- // --- --- AFFX_control No -1.71507827025374 1.66643015624389 -17.3850485149111 -3.35140163784413 1.34673209258745 Max fold change at or above threshold 3 17.3850485149111 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777600_s_at SPAC1556.06b.S1 --- 17.3692489022028 --- --- --- --- 2.3338360786438 0.630032241344452 0.628073394298553 0.134365975856781 0.466064006090164 0.665526986122131 0.633789002895355 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1556.06b /GEN=meu2 /DEF=meiotic expression upregulated (PMID 11376151) --- --- --- --- --- --- AB017033 // Schizosaccharomyces pombe mRNA for Meu2, complete cds. // gb // 10 // --- /// AB017034 // Schizosaccharomyces pombe mRNA for Meu1, complete cds. // gb // 10 // --- /// SPAC1556.06b // |meu2||meiotic expression upregulated |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- /// SPAC1556.06 // |meu1||meiotic expression upregulated |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.68501651578362 -3.70431213752415 -1.3351012262592 -3.71586521548215 -17.3692489022028 Max fold change at or above threshold 0 17.3692489022028 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771746_at SPBC800.12c.S1 --- 17.357485050411 --- --- --- --- 8.18617630004883 1.33561563491821 1.2649894952774 0.471622258424759 0.1884765625 0.780517995357513 0.850341975688934 0.865478515625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC800.12c /DEF=ubiquitin family protein --- --- --- --- --- --- SPBC800.12c // |||ubiquitin family protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -14.0055252692195 -6.12914081419099 -12.383307770189 -6.47133935152058 -17.357485050411 Max fold change at or above threshold 1 17.357485050411 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776146_at SPBC19G7.08c.S1 --- 17.3277565556306 --- --- --- --- 3.85671162605286 0.947835743427277 0.708459079265594 0.313710629940033 0.303710997104645 0.828612983226776 0.919434010982513 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19G7.08c /DEF=arrestin family --- --- --- --- --- --- SPBC19G7.08c // |||arrestin family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -3.45773528914157 -4.06896622415545 -17.3277565556306 -5.44380295055406 -12.2938506316795 Max fold change at or above threshold 1 17.3277565556306 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774455_at SPAC823.06.S1 --- 17.3129513512358 --- --- --- --- 0.579826414585114 1.74706661701202 10.0385065078735 0.361807227134705 0.828612983226776 0.303710997104645 0.0805663987994194 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC823.06 /GEN=taf3 /DEF=transcription factor TFIID complex --- --- --- --- --- --- SPAC823.06 // |taf3||transcription factor TFIID complex subunit Taf3|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 11.5528703962315 3.01308559435346 1.50701227287815 17.3129513512358 -1.60258383774418 Max fold change at or above threshold 1 17.3129513512358 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779444_at SPCC1739.06c.S1 --- 17.3122964757617 --- --- --- --- 11.8352556228638 10.0967655181885 8.53168678283691 2.9489324092865 0.091552734375 0.334473013877869 0.334473013877869 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1739.06c /DEF=uroporphyrin methyltransferase (predicted) --- --- --- --- --- --- D89123 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0450. // gb // 9 // --- /// SPCC1739.06c // |||uroporphyrin methyltransferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- AB009602 // gb // 5 // Cross Hyb Matching Probes No No -6.89813367943976 -1.17218287396529 -17.3122964757617 -1.38721168792467 -4.01340348988444 Max fold change at or above threshold 4 17.3122964757617 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770131_at SPCC330.06c.S1 --- 17.3105068881654 --- --- --- --- 0.384457170963287 1.83881914615631 6.65514850616455 1.00096952915192 0.780517995357513 0.466064006090164 0.129638999700546 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC330.06c /GEN=pmp20 /DEF=peroxiredoxin --- --- --- --- --- --- AJ002536 // Schizosaccharomyces pombe mRNA for peroxisomal membrane protein 20. // gb // 10 // --- /// SPCC330.06c // |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.24836572833285 4.78289725107483 1.72669489456089 17.3105068881654 2.60359177758061 Max fold change at or above threshold 1 17.3105068881654 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777994_at SPAC3A12.11c.S1 --- 17.2953806044166 --- --- --- --- 0.38431316614151 6.64684247970581 0.268493592739105 5.64469766616821 0.780517995357513 0.398925989866257 0.828612983226776 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A12.11c /GEN=cwf2 /DEF=involved in mRNA splicing (PMID 12088152) --- --- --- --- --- --- SPAC3A12.11c // |cwf2|prp3|RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.07605566631848 17.2953806044166 6.54951862717044 -1.43136810908909 14.6877551004582 Max fold change at or above threshold 2 17.2953806044166 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775061_at SPAC821.08c.S1 --- 17.2773458038455 --- --- --- --- 6.36942052841187 0.61432671546936 0.726282000541687 0.368657350540161 0.303710997104645 0.601073980331421 0.753906011581421 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC821.08c /GEN=slp1 /DEF=WD repeat protein --- --- --- --- --- --- SPAC821.08c // |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -16.4147407279059 -10.3681320835046 -1.28694184462869 -8.76990001633157 -17.2773458038455 Max fold change at or above threshold 1 17.2773458038455 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770329_at SPAC23A1.04c.S1 --- 17.2701822209146 --- --- --- --- 6.56890773773193 6.45985221862793 0.448387026786804 0.38036122918129 0.149657994508743 0.274170011281967 0.753906011581421 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23A1.04c /DEF=glycosyl hydrolase family 47 --- --- --- --- --- --- SPAC23A1.04c // |||Alpha mannosidase-like protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.79905860915863 -1.016882045504 -1.51247905189859 -14.6500842917011 -17.2701822209146 Max fold change at or above threshold 2 17.2701822209146 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778845_at SPBC11C11.07.S1 --- 17.2582370048939 --- --- --- --- 8.21643829345703 0.476087927818298 12.6610145568848 4.57720756530762 0.0676269978284836 0.633789002895355 0.018554700538516 0.111571997404099 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11C11.07 /GEN=rpl1801 /DEF=60S ribosomal protein L18 --- --- --- --- --- --- SPBC11C11.07 // |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.67942462344299 -17.2582370048939 -1.47536261764888 1.54093709520913 -1.79507662176662 Max fold change at or above threshold 3 17.2582370048939 Max fold change at or above threshold AAAPPA No 4 0 AAPA 3 1 0 No No x = 1
1772440_at SPCC1322.07c.S1 --- 17.2547936183788 --- --- --- --- 9.41977214813232 5.0164361000061 0.545922040939331 1.21385443210602 0.149657994508743 0.13427734375 0.533936023712158 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1322.07c /DEF=sequence orphan --- --- --- --- --- --- SPCC1322.07c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -10.4117159576117 -1.87778174790682 -4.51799042253528 -17.2547936183788 -7.76021563952209 Max fold change at or above threshold 2 17.2547936183788 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774828_at SPAC6G10.08.S1 --- 17.2442357829573 --- --- --- --- 1.72183620929718 2.42782044410706 29.6917495727539 5.77212238311768 0.567627012729645 0.567627012729645 0.432372987270355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G10.08 /GEN=idp1 /DEF=isocitrate dehydrogenase (NADP+) (predicted) --- --- --- --- --- --- SPAC6G10.08 // |idp1||isocitrate dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.80230055659141 1.41001822995582 4.09002334495008 17.2442357829573 3.35230630645974 Max fold change at or above threshold 2 17.2442357829573 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770870_at SPAC13G7.04c.S1 --- 17.1556275208917 --- --- --- --- 0.749981462955475 12.8664026260376 1.49372100830078 2.82283163070679 0.601073980331421 0.303710997104645 0.398925989866257 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G7.04c /GEN=mac1 /DEF=membrane anchored protein (PMID 12206652) --- --- --- --- --- --- SPAC13G7.04c // |mac1||membrane anchored protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 12.1216692796664 17.1556275208917 -1.22317586887077 1.99167723748055 3.76386853560722 Max fold change at or above threshold 2 17.1556275208917 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775514_at SPAC644.13c.S1 --- 17.142309161256 --- --- --- --- 3.93801498413086 6.86867570877075 2.52392959594727 4.83833932876587 0.334473013877869 0.219482004642487 0.432372987270355 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC644.13c /DEF=Rab interactor activity (predicted) --- --- --- --- --- --- SPAC644.13c // |||Rab interactor activity |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.52745115861435 1.74419745390753 -17.142309161256 -1.5602713286671 1.22862390017892 Max fold change at or above threshold 4 17.142309161256 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777070_at SPBC1778.05c.S1 --- 17.1319309106269 --- --- --- --- 0.190746083855629 1.61352097988129 2.20818734169006 0.776541888713837 0.969726979732513 0.805419981479645 0.725830018520355 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1778.05c /DEF=sequence orphan --- --- --- --- --- --- SPBC1778.05c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 6.2351694466724 8.45899924793487 17.1319309106269 11.5765802214917 4.07107644370608 Max fold change at or above threshold 0 17.1319309106269 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778353_at SPAC7D4.06c.S1 --- 17.1178685390307 --- --- --- --- 0.712264358997345 10.4044198989868 12.1924476623535 3.69587564468384 0.625244140625 0.149657994508743 0.044921875 0.149657994508743 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC7D4.06c /DEF=mannosyltransferase (predicted) --- --- --- --- --- --- SPAC7D4.06c // |||Dolichol-P-Man dependent alpha|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 10.4354523372039 14.6075256575145 8.4195874864318 17.1178685390307 5.18890998545333 Max fold change at or above threshold 3 17.1178685390307 Max fold change at or above threshold APAAPA No 4 0 AAPA 3 1 0 No No x = 1
1772387_at SPCC70.03c.S1 --- 17.1065065203526 --- --- --- --- 15.9222135543823 8.00523090362549 11.5993700027466 2.43761539459229 0.014160200022161 0.239013671875 0.194580003619194 0.129638999700546 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC70.03c /DEF=proline dehydrogenase (predicted) --- --- --- --- --- --- SPCC70.03c // |||proline dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.62939004437097 -1.98897617646123 -17.1065065203526 -1.37267916711099 -6.5318809479563 Max fold change at or above threshold 3 17.1065065203526 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1771118_at SPAC14C4.16.S1 --- 17.102822775401 --- --- --- --- 0.152715533971787 0.316415667533875 0.149906113743782 0.385103642940521 0.870360970497131 0.932372987270355 0.870360970497131 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC14C4.16 /DEF=sequence orphan --- --- --- --- --- --- SPAC14C4.16 // |dad3||DASH complex subunit Dad3 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.52817906427104 2.07192850199726 17.102822775401 -1.01874119845977 2.52170576839726 Max fold change at or above threshold 0 17.102822775401 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779456_at SPBPB21E7.10.S1 --- 17.0860181889318 --- --- --- --- 5.21371650695801 8.92024803161621 0.915713131427765 4.06795406341553 0.665526986122131 0.24609400331974 0.753906011581421 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB21E7.10 /DEF=sequence orphan --- --- --- --- --- --- SPBPB21E7.10 // ||SPAPB21E7.10|sequence orphan|Schizosaccharomyces pombe|chr 2||Partial|Manual // sanger // 10 // --- --- No No -15.6450208606781 1.71091926837825 -17.0860181889318 -5.69361334682278 -1.28165569858487 Max fold change at or above threshold 3 17.0860181889318 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769656_at SPAC19A8.14.S1 --- 17.0700084314412 --- --- --- --- 0.694349646568298 11.8525543212891 4.16588306427002 3.76662230491638 0.953857004642487 0.219482004642487 0.303710997104645 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19A8.14 /DEF=conserved protein (broad species distribution) --- --- --- --- --- --- SPAC19A8.14 // |||aminoacyl-tRNA hydrolase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.09971350955177 17.0700084314412 -1.33131486218523 5.99969062396614 5.42467663594596 Max fold change at or above threshold 3 17.0700084314412 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769814_at SPAC10F6.10.S1 --- 17.0084805351188 --- --- --- --- 3.23861575126648 5.31697463989258 4.4483585357666 1.56242084503174 0.398925989866257 0.5 0.24609400331974 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC10F6.10 /DEF=protein kinase (RIO family) (PMID 12135737) --- --- --- --- --- --- SPAC10F6.10 // |||protein kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -17.0084805351188 1.64174296929586 -4.79475129838282 1.37353699154555 -2.07281908812519 Max fold change at or above threshold 3 17.0084805351188 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770223_at SPAC1420.01c.S1 --- 16.9989910546392 --- --- --- --- 2.82642102241516 4.4693284034729 6.59971332550049 5.76327323913574 0.303710997104645 0.194580003619194 0.149657994508743 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1420.01c /DEF=hypothetical protein --- --- --- --- --- --- SPAC1420.01c // ||SPAC56E4.08c|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -16.9989910546392 1.58126774745465 -1.0400055198541 2.33500716034905 2.0390710348634 Max fold change at or above threshold 4 16.9989910546392 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1774281_at SPBC29A10.12.S1 --- 16.9771938954074 --- --- --- --- 6.33054733276367 1.11272513866425 2.35566163063049 6.63058567047119 0.334473013877869 0.870360970497131 0.633789002895355 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A10.12 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC29A10.12 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.06447373178308 -5.68922828539947 -16.9771938954074 -2.68737549164449 1.04739532333242 Max fold change at or above threshold 2 16.9771938954074 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778990_at SPAC8E11.03c.S1 --- 16.9671329071875 --- --- --- --- 6.18853616714478 0.809085071086884 2.27129149436951 0.364736706018448 0.219482004642487 0.805419981479645 0.5 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8E11.03c /GEN=dmc1 /DEF=RecA family --- --- --- --- --- --- SPAC8E11.03c // |dmc1|dmp1|AAA family ATPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.39313978817018 -7.64880775618738 -4.55102607425333 -2.72467720787316 -16.9671329071875 Max fold change at or above threshold 1 16.9671329071875 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774609_at SPCC1442.16c.S1 --- 16.9525706842388 --- --- --- --- 12.2774772644043 1.84017062187195 7.84921026229858 7.65148878097534 0.466064006090164 0.5927734375 0.171387001872063 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1442.16c /DEF=quinone oxidoreductase (predicted) --- --- --- --- --- --- SPCC1442.16c // ||SPCC285.01c|quinone oxidoreductase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.15092115760576 -6.67192330889122 -16.9525706842388 -1.56416720333963 -1.60458671715379 Max fold change at or above threshold 3 16.9525706842388 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773990_at SPAC5D6.10c.S1 --- 16.9430416519628 --- --- --- --- 0.545049846172333 9.23480224609375 5.57479810714722 0.206167995929718 0.976073980331421 0.327392578125 0.24609400331974 0.995850026607513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5D6.10c /DEF=dubious --- --- --- --- --- --- SPAC5D6.10c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.16870268083735 16.9430416519628 -1.7250470102819 10.2280518860739 -2.64371705081781 Max fold change at or above threshold 2 16.9430416519628 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779781_at SPBPB2B2.13.S1 --- 16.8980996917441 --- --- --- --- 3.63126039505005 0.214891642332077 1.24520909786224 3.43663597106934 0.171387001872063 0.870360970497131 0.805419981479645 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB2B2.13 /DEF=galactokinase (predicted) --- --- --- --- --- --- SPBPB2B2.13 // |||galactokinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.0395606697124 -16.8980996917441 -1.19251774024199 -2.91618524253006 -1.05663224898393 Max fold change at or above threshold 2 16.8980996917441 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770692_at YML123C.S1 High-affinity inorganic phosphate (Pi) transporter and low-affinity manganese transporter; regulated by Pho4p and Spt7p; mutation confers resistance to arsenate; exit from the ER during maturation requires Pho86p 16.8902210318633 32.2594881057739 471.182220458984 PHO84 6817 // phosphate transport // inferred from mutant phenotype /// 6817 // phosphate transport // inferred from direct assay /// 6817 // phosphate transport // inferred from sequence similarity /// 6828 // manganese ion transport // inferred from mutant phenotype 5887 // integral to plasma membrane // inferred from sequence similarity /// 5887 // integral to plasma membrane // inferred from direct assay 5315 // inorganic phosphate transporter activity // inferred from mutant phenotype /// 5315 // inorganic phosphate transporter activity // inferred from direct assay /// 5315 // inorganic phosphate transporter activity // inferred from sequence similarity /// 5384 // manganese ion transporter activity // inferred from mutant phenotype 433.729187011719 25.6793079376221 38.8396682739258 508.63525390625 0.000244141003349796 0.0461426004767418 0.018554700538516 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML123C /GEN=PHO84 /DB_XREF=GI:6323512 /SEG=NC_001145:-24038,25801 /DEF=High-affinity inorganic phosphate (Pi) transporter and low-affinity manganese transporter; regulated by Pho4p and Spt7p; mutation confers resistance to arsenate; exit from the ER during maturation requires Pho86p /NOTE=Pho84p; go_component: integral to plasma membrane [goid GO:0005887] [evidence IDA,ISS] [pmid 2038328]; go_function: inorganic phosphate transporter activity [goid GO:0005315] [evidence IMP,ISS] [pmid 2038328]; go_function: inorganic phosphate transporter activity [goid GO:0005315] [evidence IDA] [pmid 7851439]; go_function: manganese ion transporter activity [goid GO:0005384] [evidence IMP] [pmid 12923174]; go_process: manganese ion transport [goid GO:0006828] [evidence IMP] [pmid 12923174]; go_process: phosphate transport [goid GO:0006817] [evidence IMP,ISS] [pmid 2038328]; go_process: phosphate transport [goid GO:0006817] [evidence IDA] [pmid 7851439] --- --- --- --- --- S0004592 // span:134-153,163-185,248-270,350-372,392-411,421-440,447-469,484-506,519-541 // numtm:9 S0004592 // PHO84 SGDID:S0004592, Chr XIII from 25801-24038, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018613 // cdna:Genscan chromosome:SGD1:XIII:24038:25801:-1 // ensembl // 11 // --- /// GENEFINDER00000022072 // cdna:GeneFinder chromosome:SGD1:XIII:24038:25801:-1 // ensembl // 11 // --- /// YML123C // cdna:known chromosome:SGD1:XIII:24038:25801:-1 gene:YML123C // ensembl // 11 // --- M28428 // gb // 1 // Cross Hyb Matching Probes No cerevisiae_gene 1.11457035028051 -16.8902210318633 1.84653160844044 -11.1671702227924 1.1727023892734 Max fold change at or above threshold 4 16.8902210318633 Max fold change at or above threshold 0.712899474211484 -0.885370999902312 -0.833823832673786 1.00629535836461 251.720854282379 255.30714962394 1.01424711254769 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1774639_at SPCC16A11.06c.S1 --- 16.8870373228942 --- --- --- --- 0.302342355251312 2.41030502319336 1.58191704750061 2.96066188812256 0.633789002895355 0.780517995357513 0.303710997104645 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16A11.06c /DEF=alpha-1,2 mannosyltransferase (predicted) --- --- --- --- --- --- SPCC16A11.06c // |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 13.5836480226667 7.97210507006162 16.8870373228942 5.23220455230526 9.79241524285145 Max fold change at or above threshold 1 16.8870373228942 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779715_at SPAC25B8.02.S1 --- 16.8866504743525 --- --- --- --- 0.78833270072937 9.24441146850586 13.3122987747192 1.20231211185455 0.932372987270355 0.432372987270355 0.5 0.7998046875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25B8.02 /DEF=sequence orphan --- --- --- --- --- --- SPAC25B8.02 // |||histone deacetylase complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.43861860870096 11.7265355857405 4.8954881994806 16.8866504743525 1.52513286679871 Max fold change at or above threshold 2 16.8866504743525 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776693_at SPCC2H8.02.S1 --- 16.8550139793923 --- --- --- --- 9.23796081542969 0.54808384180069 10.2592096328735 6.7162766456604 0.129638999700546 0.633789002895355 0.0676269978284836 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC2H8.02 /DEF=inorganic phosphate transporter --- --- --- --- --- --- SPCC2H8.02 // |||inorganic phosphate transporter|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.06674282604279 -16.8550139793923 -1.21039476856569 1.11054916099429 -1.37545865109631 Max fold change at or above threshold 3 16.8550139793923 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771092_at SPCC1223.02.S1 --- 16.8490123910125 --- --- --- --- 6.38475799560547 8.84026145935059 6.58400440216064 3.02260947227478 0.366210997104645 0.219482004642487 0.0952147990465164 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1223.02 /GEN=nmt1 /DEF=repressed by thiamine --- --- --- --- --- --- SPCC1223.02 // |nmt1|thi3|no message in thiamine |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.06330377130359 1.3845883376371 -16.8490123910125 1.03120657144598 -2.11233308641767 Max fold change at or above threshold 4 16.8490123910125 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773422_at SPBC3B9.08c.S1 --- 16.8469977809803 --- --- --- --- 0.21592053771019 2.60514783859253 1.76716542243958 3.30007529258728 0.994140982627869 0.567627012729645 0.274170011281967 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B9.08c /DEF=mago-nashi homolog --- --- --- --- --- --- SPBC3B9.08c // |||mago-nashi homolog|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.10763819253616 12.0653082204212 16.8469977809803 8.18433226028493 15.2837489549821 Max fold change at or above threshold 2 16.8469977809803 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771285_at SPBC20F10.03.S1 --- 16.8415740575386 --- --- --- --- 5.04777145385742 2.02966141700745 4.84556531906128 0.640714943408966 0.194580003619194 0.633789002895355 0.533936023712158 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC20F10.03 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC20F10.03 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -16.8415740575386 -2.48700172923418 -5.51711838225517 -1.04173014323029 -7.87834200807058 Max fold change at or above threshold 2 16.8415740575386 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775938_at SPBC1683.09c.S1 --- 16.8395648212339 --- --- --- --- 0.327701836824417 5.51835632324219 0.5501589179039 2.12177729606628 0.904784977436066 0.303710997104645 0.696289002895355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1683.09c /GEN=frp1 /DEF=ferric-chelate reductase activity (PMID 8321236) --- --- --- --- --- --- SPBC1683.09c // |frp1||ferric-chelate reductase Frp1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.20061549313152 16.8395648212339 1.47437837678564 1.67883989676468 6.47471895985476 Max fold change at or above threshold 1 16.8395648212339 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776060_at SPAC17D4.02.S1 --- 16.832513761735 --- --- --- --- 9.09906101226807 11.1684980392456 7.45339775085449 2.34859609603882 0.274170011281967 0.030273400247097 0.0952147990465164 0.55908203125 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17D4.02 /GEN=sna41 /DEF=pre-replicative complex --- --- --- --- --- --- SPAC17D4.02 // |cdc45|sna41, goa1|pre-initiation complex subunit Cdc45|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -16.832513761735 1.22743413020172 -1.94241618354247 -1.22079369925279 -3.87425535945269 Max fold change at or above threshold 3 16.832513761735 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1770940_at SPAC6G10.09.S1 --- 16.8296960386711 --- --- --- --- 0.40858593583107 6.66303300857544 1.06857430934906 6.87637710571289 0.753906011581421 0.358154296875 0.753906011581421 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G10.09 /DEF=mannosyl-oligosaccharide glucosidase (predicted) --- --- --- --- --- --- SPAC6G10.09 // |||mannosyl-oligosaccharide glucosidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.29554816669206 16.3075437117598 2.61537028544912 2.61529880409506 16.8296960386711 Max fold change at or above threshold 2 16.8296960386711 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775552_at SPBC11G11.04.S1 --- 16.8180139109652 --- --- --- --- 5.22849702835083 7.77347326278687 4.67658662796021 0.443474262952805 0.334473013877869 0.030273400247097 0.194580003619194 0.753906011581421 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11G11.04 /GEN=trs20 /DEF=TRAPP (predicted) --- --- --- --- --- --- SPBC11G11.04 // |trs20||TRAPP |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.27178943522138 1.48675101480143 -16.8180139109652 -1.1180156477998 -11.7898544856644 Max fold change at or above threshold 3 16.8180139109652 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1775679_at SPAC12G12.14c.S1 --- 16.8004329826869 --- --- --- --- 0.312599629163742 1.80036890506744 1.51784718036652 1.52703011035919 0.633789002895355 0.725830018520355 0.567627012729645 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12G12.14c /GEN=pfs2 /DEF=WD repeat protein --- --- --- --- --- --- SPAC12G12.14c // |pfs2||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 12.9462052188829 5.75934434050271 16.8004329826869 4.85556295900612 4.88493896951913 Max fold change at or above threshold 0 16.8004329826869 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774451_at SPAC56E4.07.S1 --- 16.7807397624218 --- --- --- --- 3.71917748451233 4.24413633346558 3.05821776390076 1.97788608074188 0.0805663987994194 0.533936023712158 0.466064006090164 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC56E4.07 /DEF=acetyltransferase (predicted) --- --- --- --- --- --- SPAC56E4.07 // |||acetyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -16.7807397624218 1.14114917912343 -1.66329047519277 -1.21612578685977 -1.88038002831655 Max fold change at or above threshold 3 16.7807397624218 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776976_at SPBC2F12.13.S1 --- 16.7777501436316 --- --- --- --- 7.54123258590698 4.00990676879883 6.3895378112793 0.449478179216385 0.296142578125 0.466064006090164 0.0952147990465164 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2F12.13 /GEN=klp5 /DEF=kinesin-like protein --- --- --- --- --- --- SPBC2F12.13 // |klp5|sot1|kinesin-like protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.58656048740722 -1.88065035441359 1.28587817056738 -1.18024696130519 -16.7777501436316 Max fold change at or above threshold 3 16.7777501436316 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771255_at SPAPB24D3.03.S1 --- 16.7765619249199 --- --- --- --- 5.87666988372803 2.97612285614014 1.48234117031097 0.350290477275848 0.753906011581421 0.5 0.888427972793579 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB24D3.03 /DEF=arginase family --- --- --- --- --- --- SPAPB24D3.03 // |||arginase family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.55758435672864 -1.97460594464495 -11.6196336298715 -3.96445164003317 -16.7765619249199 Max fold change at or above threshold 2 16.7765619249199 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771903_at SPBC1734.11.S1 --- 16.7670034123108 --- --- --- --- 3.25299763679504 7.18046426773071 4.72246360778809 0.194011867046356 0.665526986122131 0.696289002895355 0.633789002895355 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1734.11 /DEF=chaperone regulator activity (predicted) --- --- --- --- --- --- SPBC1734.11 // |||chaperone regulator activity |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.25244903387938 2.20733768340672 -11.780612543352 1.45172672564275 -16.7670034123108 Max fold change at or above threshold 3 16.7670034123108 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774557_at SPAC688.11.S1 --- 16.7485288133685 --- --- --- --- 0.30497419834137 1.64135992527008 5.10786914825439 0.50092351436615 0.850341975688934 0.780517995357513 0.432372987270355 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC688.11 /DEF=actin cortical patch component (predicted) --- --- --- --- --- --- D89267 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1757. // gb // 11 // --- /// SPAC688.11 // |end4|sla2|Huntingtin-interacting protein homolog|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.93787497913661 5.38196324212595 1.77721377675644 16.7485288133685 1.6425111274674 Max fold change at or above threshold 1 16.7485288133685 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773489_at SPAC1952.16.S1 --- 16.7284894358168 --- --- --- --- 0.68954336643219 1.27548182010651 4.60234069824219 3.12096238136292 0.456298828125 0.696289002895355 0.633789002895355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1952.16 /GEN=rga9 /DEF=FCH domain --- --- --- --- --- --- SPAC1952.16 // |rga9||FCH domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 15.0471643198868 1.84974851793015 16.7284894358168 6.67447606965672 4.52612922304116 Max fold change at or above threshold 2 16.7284894358168 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778935_at SPBC1347.01c.S1 --- 16.7190381830868 --- --- --- --- 0.237367078661919 0.826115310192108 3.9685492515564 0.262061059474945 0.951171875 0.828612983226776 0.149657994508743 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1347.01c /DEF=deoxycytidyl transferase (predicted) --- --- --- --- --- --- SPBC1347.01c // ||SPBC215.16c|deoxycytidyl transferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.32265377765559 3.48032808445497 13.4647899313441 16.7190381830868 1.10403288001112 Max fold change at or above threshold 1 16.7190381830868 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778916_at SPBC1709.16c.S1 --- 16.7024552252213 --- --- --- --- 4.45798540115356 3.77200293540955 4.16421747207642 0.715407907962799 0.398925989866257 0.696289002895355 0.665526986122131 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1709.16c /DEF=conserved protein (mainly bacterial fungal and plant) --- --- --- --- --- --- SPBC1709.16c // |||conserved protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.32584790071103 -1.18186159382443 -16.7024552252213 -1.07054577025505 -6.23138960519483 Max fold change at or above threshold 3 16.7024552252213 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778652_at SPCC24B10.14c.S1 --- 16.6682217852595 --- --- --- --- 7.51746845245361 10.8012018203735 3.07838368415833 8.38621234893799 0.21337890625 0.274170011281967 0.398925989866257 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC24B10.14c /DEF=sequence orphan --- --- --- --- --- --- SPCC24B10.14c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -16.6682217852595 1.43681372109359 1.22508825409568 -2.44201802755754 1.11556335779511 Max fold change at or above threshold 4 16.6682217852595 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1771610_at SPBC646.15c.S1 --- 16.6678650232063 --- --- --- --- 10.8637037277222 5.17475128173828 13.6689767837524 0.747703731060028 0.334473013877869 0.633789002895355 0.601073980331421 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC646.15c /DEF=hypothetical protein --- --- --- --- --- --- SPBC646.15c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -16.6678650232063 -2.09936731955799 -12.6845396365452 1.25822437046693 -14.5294229203866 Max fold change at or above threshold 3 16.6678650232063 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777801_at SPAC343.07.S1 --- 16.6568837357915 --- --- --- --- 5.29789209365845 4.06630086898804 0.958934962749481 1.41142082214355 0.366210997104645 0.5 0.696289002895355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC343.07 /DEF=RNA-binding protein --- --- --- --- --- --- SPAC343.07 // |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -16.6568837357915 -1.30287754505901 -4.83075066849279 -5.52476685016073 -3.75358788147423 Max fold change at or above threshold 2 16.6568837357915 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774188_at SPBC16G5.16.S1 --- 16.6464670533993 --- --- --- --- 0.888492107391357 14.7902545928955 7.49313163757324 0.653844952583313 0.567627012729645 0.129638999700546 0.0561522990465164 0.567627012729645 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16G5.16 /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPBC16G5.16 // |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.75746403027312 16.6464670533993 1.27170782207725 8.43353764792951 -1.35887277844841 Max fold change at or above threshold 2 16.6464670533993 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1774782_at SPAC23A1.15c.S1 --- 16.6343752579145 --- --- --- --- 0.293572217226028 4.88339042663574 0.93604451417923 0.220108762383461 0.981445014476776 0.696289002895355 0.904784977436066 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23A1.15c /DEF=SNARE (predicted) --- --- --- --- --- --- SPAC23A1.15c // |||SNARE |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.88903776796838 16.6343752579145 -1.18892800760864 3.18846423215364 -1.33375979241837 Max fold change at or above threshold 1 16.6343752579145 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777226_at SPCC1235.06.S1 --- 16.6094154981274 --- --- --- --- 0.44888374209404 0.906281888484955 7.45569658279419 0.371740967035294 0.753906011581421 0.780517995357513 0.432372987270355 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1235.06 /GEN=sif1 /DEF=involved in meiosis (predicted) --- --- --- --- --- --- SPCC1235.06 // |sif1||Sad1 Interacting Factor 1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.4935286650101 2.01896794982406 14.9264816005323 16.6094154981274 -1.20751755092794 Max fold change at or above threshold 1 16.6094154981274 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772242_at SPAC17G6.15c.S1 --- 16.6036880095193 --- --- --- --- 6.30518245697021 7.18451404571533 5.49081707000732 3.19457173347473 0.111571997404099 0.0805663987994194 0.0375977009534836 0.171387001872063 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G6.15c /DEF=MTC tricarboxylate transporter --- --- --- --- --- --- SPAC17G6.15c // |||MTC tricarboxylate transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -16.6036880095193 1.13946171974342 1.57996195395785 -1.14831406265767 -1.97371760067259 Max fold change at or above threshold 4 16.6036880095193 Max fold change at or above threshold AAAPPA No 4 0 AAPA 3 1 0 No No x = 1
1777505_at SPAC1006.04c.S1 --- 16.589564829999 --- --- --- --- 4.15722942352295 0.360951215028763 2.69212555885315 0.250593036413193 0.398925989866257 0.753906011581421 0.219482004642487 0.5927734375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1006.04c /DEF=hypothetical protein --- --- --- --- --- --- SPAC1006.04c // |mcp3||meiosis specific coiled-coil protein mcp3|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -3.51837839708395 -11.5174274262844 -2.24691602384143 -1.54421825157885 -16.589564829999 Max fold change at or above threshold 2 16.589564829999 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775318_at SPAC26F1.11.S1 --- 16.5821850299835 --- --- --- --- 1.65821850299835 0.408452361822128 0.108190484344959 0.0625131130218506 0.366210997104645 0.696289002895355 0.870360970497131 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26F1.11 /DEF=dubious --- --- --- --- --- --- SPAC26F1.11 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.05112859884054 -4.0597598593896 1.71278775311113 -15.3268424024355 -16.5821850299835 Max fold change at or above threshold 0 16.5821850299835 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770693_at SPAC6F12.05c.S1 --- 16.5796344685556 --- --- --- --- 3.73095846176147 10.2251605987549 9.85390758514404 0.225032612681389 0.334473013877869 0.24609400331974 0.219482004642487 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F12.05c /GEN=tnr3 /DEF=thiamine pyrophosphokinase (thiamine kinase) (PMID 7499352) --- --- --- --- --- --- SPAC6F12.05c // |tnr3||thiamine diphosphokinase Tnr3 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.89533390922509 2.74062568735417 -10.2925916474172 2.64111961742179 -16.5796344685556 Max fold change at or above threshold 3 16.5796344685556 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775752_at SPAC5D6.13.S1 --- 16.5662270176017 --- --- --- --- 6.84980821609497 3.75721907615662 5.60422658920288 2.82323718070984 0.334473013877869 0.533936023712158 0.633789002895355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5D6.13 /DEF=involved in intracellular protein transport (predicted) --- --- --- --- --- --- SPAC5D6.13 // ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.34683948926293 -1.82310588689491 -16.5662270176017 -1.2222575420651 -2.42622485382994 Max fold change at or above threshold 4 16.5662270176017 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778221_at SPCC736.07c.S1 --- 16.5486235485604 --- --- --- --- 0.478353351354599 7.91608953475952 2.20397233963013 2.48441934585571 0.71826171875 0.303710997104645 0.533936023712158 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC736.07c /DEF=hypothetical protein --- --- --- --- --- --- SPCC736.07c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 11.2349483750886 16.5486235485604 -1.13488276098176 4.60741486056056 5.19369068664481 Max fold change at or above threshold 1 16.5486235485604 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779064_at SPAC23C11.10.S1 --- 16.5414355136534 --- --- --- --- 1.93717563152313 0.841330826282501 0.51647013425827 0.149058699607849 0.624755859375 0.665526986122131 0.780517995357513 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C11.10 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC23C11.10 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.84640554973321 -2.30251355472463 -16.5414355136534 -3.75079893884902 -12.9960588454049 Max fold change at or above threshold 0 16.5414355136534 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776106_at SPBC30D10.12c.S1 --- 16.5381840717717 --- --- --- --- 5.72297048568726 8.4073371887207 0.346045881509781 2.08029413223267 0.219482004642487 0.633789002895355 0.919434010982513 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30D10.12c /GEN=rsm27 /DEF=mitochondrial ribosomal protein subunit s27 --- --- --- --- --- --- SPBC30D10.12c // |rsm27||mitochondrial ribosomal protein subunit S27|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -15.8476586226384 1.46905129246199 -1.45158558895464 -16.5381840717717 -2.75103909443089 Max fold change at or above threshold 2 16.5381840717717 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771356_at SPAC12B10.13.S1 --- 16.5103607485072 --- --- --- --- 8.82581329345703 1.29302763938904 2.01624512672424 0.767419040203094 0.194580003619194 0.624755859375 0.466064006090164 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12B10.13 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC12B10.13 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.96500679290487 -6.82569577370154 -16.5103607485072 -4.3773513331666 -11.500644147585 Max fold change at or above threshold 1 16.5103607485072 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-M15077-1_at AFFX-Sc-M15077-1 --- 16.4756459822225 --- --- --- --- 0.338490575551987 0.288110315799713 0.345098167657852 0.57234525680542 0.696289002895355 0.870360970497131 0.601073980331421 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL M15077 /FEA=CDS /DB_XREF=AAA29795.1 GI:160794 /NOTE=Luciferase --- --- --- --- --- --- AFFX-Sc-M15077-1 // --- // affx // --- // --- --- No No 16.4756459822225 -1.17486447721399 2.83118253184865 1.01952075650878 1.69087501438431 Max fold change at or above threshold 0 16.4756459822225 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776039_at SPAC22G7.01c.S1 --- 16.4557887841314 --- --- --- --- 8.63640308380127 0.524824619293213 0.605852067470551 0.582478582859039 0.303710997104645 0.870360970497131 0.5 0.79931640625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22G7.01c /DEF=aminopeptidase (predicted) --- --- --- --- --- --- SPAC22G7.01c // ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -11.1814674531994 -16.4557887841314 1.09315768405767 -14.2549700620128 -14.826988215447 Max fold change at or above threshold 1 16.4557887841314 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770601_at SPCC1393.12.S1 --- 16.43973147326 --- --- --- --- 3.25997138023376 0.312049269676209 1.40254354476929 3.72732281684875 0.398925989866257 0.725830018520355 0.601073980331421 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1393.12 /DEF=sequence orphan --- --- --- --- --- --- SPCC1393.12 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -6.48399582981333 -10.4469764778376 -16.43973147326 -2.32432810545645 1.14336059495758 Max fold change at or above threshold 2 16.43973147326 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770422_at SPBC16E9.16c.S1 --- 16.4396028283554 --- --- --- --- 16.0707302093506 0.977561950683594 6.84972047805786 13.5940017700195 0.194580003619194 0.567627012729645 0.366210997104645 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16E9.16c /DEF=pseudogene --- --- --- --- --- --- SPBC16E9.16c // |||pseudogene|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.53894222791518 -16.4396028283554 -1.17704702074367 -2.34618774019042 -1.18219274068312 Max fold change at or above threshold 3 16.4396028283554 Max fold change at or above threshold AAAPAP No 4 0 AAAP 3 1 0 No No x = 1
1773042_at SPAC167.01.S1 --- 16.404739258231 --- --- --- --- 6.10485315322876 0.826524376869202 1.08532607555389 2.89520525932312 0.129638999700546 0.688720703125 0.39892578125 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC167.01 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPAC167.01 // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -9.38086914310705 -7.38617435138862 -16.404739258231 -5.6249023134482 -2.10860806278586 Max fold change at or above threshold 2 16.404739258231 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773398_at SPAC14C4.08.S1 --- 16.38929427441 --- --- --- --- 5.72717428207397 0.580426394939423 0.676310002803802 0.349446058273315 0.274170011281967 0.805419981479645 0.850341975688934 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC14C4.08 /DEF=sequence orphan --- --- --- --- --- --- SPAC14C4.08 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.16710504977791 -9.8671844216728 -1.55081088043012 -8.46826789243191 -16.38929427441 Max fold change at or above threshold 1 16.38929427441 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777815_at SPAC1687.20c.S1 --- 16.3712252704538 --- --- --- --- 7.18287897109985 0.733091950416565 0.971241474151611 0.438750237226486 0.24609400331974 0.870360970497131 0.696289002895355 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.20c /GEN=mis6 /DEF=localization centromere --- --- --- --- --- --- SPAC1687.20c // |mis6||inner centromere protein Mis6p|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.84842804745943 -9.79806007557214 -6.14093867322305 -7.39556450405309 -16.3712252704538 Max fold change at or above threshold 1 16.3712252704538 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772650_at SPCC4G3.19.S1 --- 16.3639472362333 --- --- --- --- 0.29279425740242 0.598970949649811 4.79126977920532 3.05306625366211 0.985840022563934 0.916015625 0.567627012729645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4G3.19 /GEN=alp16 /DEF=gamma tubulin complex (PMID 1213407) --- --- --- --- --- --- SPCC4G3.19 // |alp16||gamma tubulin complex |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.40788026315723 2.04570593345544 2.25929180435328 16.3639472362333 10.4273433527965 Max fold change at or above threshold 2 16.3639472362333 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774286_at SPBC577.05c.S1 --- 16.3410102365939 --- --- --- --- 1.77779674530029 0.272270917892456 0.108793564140797 0.155926659703255 0.334473013877869 0.828612983226776 0.850341975688934 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC577.05c /DEF=sequence orphan --- --- --- --- --- --- SPBC577.05c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -11.7580380878456 -6.5295139086522 -2.92683300196915 -16.3410102365939 -11.4014931679011 Max fold change at or above threshold 0 16.3410102365939 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779880_at SPCC895.09c.S1 --- 16.3230623037162 --- --- --- --- 0.279752016067505 1.46912741661072 0.304968059062958 1.204714179039 0.901123046875 0.888427972793579 0.976073980331421 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC895.09c /DEF=RNA helicase --- --- --- --- --- --- SPCC895.09c // |||RNA helicase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.04863150000213 5.25153468869448 16.3230623037162 1.09013712698095 4.30636460095537 Max fold change at or above threshold 0 16.3230623037162 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771838_at SPCC31H12.07.S1 --- 16.3212329452008 --- --- --- --- 7.48637008666992 9.84910297393799 9.97408771514893 3.28621888160706 0.018554700538516 0.194580003619194 0.018554700538516 0.432372987270355 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC31H12.07 /GEN=sec231 /DEF=GTPase activating protein (ISS) --- --- --- --- --- --- SPCC31H12.07 // |sec231|sec23a, SPCC5E4.01|GTPase activating protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -1.89806599854176 1.31560460676064 -16.3212329452008 1.33229957905883 -2.27811060564805 Max fold change at or above threshold 4 16.3212329452008 Max fold change at or above threshold PAAAPA No 4 0 PAPA 2 2 0 No No 1 < x = 2
1775300_at SPBC725.03.S1 --- 16.2905161791865 --- --- --- --- 9.90736103057861 0.608167409896851 0.86991959810257 1.85740423202515 0.334473013877869 0.865478515625 0.828612983226776 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC725.03 /DEF=hypothetical protein --- --- --- --- --- --- SPBC725.03 // |||conserved yeast protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.29505353147087 -16.2905161791865 -1.76112410232625 -11.3888238087613 -5.33398215625713 Max fold change at or above threshold 1 16.2905161791865 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774763_at SPBC17G9.09.S1 --- 16.2765307013457 --- --- --- --- 13.2215204238892 10.6570119857788 0.812305808067322 9.14918041229248 0.0952147990465164 0.0239257998764515 0.334473013877869 0.171387001872063 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17G9.09 /GEN=tif213 /DEF=translation initiation factor 2 (gamma subunit) --- --- --- --- --- --- U37354 // Schizosaccharomyces pombe initiation factor eIF-2 gamma subunit mRNA, complete cds. // gb // 11 // --- /// SPBC17G9.09 // |tif213||translation initiation factor 2 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.07683561802837 -1.24064047610461 -1.32652743127231 -16.2765307013457 -1.44510435121874 Max fold change at or above threshold 3 16.2765307013457 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1778022_at SPBC16A3.17c.S1 --- 16.257815833833 --- --- --- --- 0.557732045650482 5.27203178405762 9.0675048828125 8.37659931182861 0.932372987270355 0.24609400331974 0.129638999700546 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16A3.17c /DEF=transporter --- --- --- --- --- --- SPBC16A3.17c // |||membrane transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.30453627252244 9.45262483153331 3.20437789503282 16.257815833833 15.0190389402119 Max fold change at or above threshold 3 16.257815833833 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779671_at SPAC1556.03.S1 --- 16.2473721989913 --- --- --- --- 8.6654806137085 4.48425149917603 4.16732168197632 1.7030656337738 0.533936023712158 0.665526986122131 0.194580003619194 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1556.03 /GEN=azr1 /DEF=serinethreonine protein phosphatase (SMART) (predicted) --- --- --- --- --- --- SPAC1556.03 // |azr1||serine/threonine protein phosphatase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.40902121615183 -1.93242520302458 -16.2473721989913 -2.07938845978383 -5.08816597661404 Max fold change at or above threshold 3 16.2473721989913 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773846_at SPBP35G2.05c.S1 --- 16.226939773393 --- --- --- --- 7.16218709945679 11.1586799621582 7.00605297088623 0.441376328468323 0.303710997104645 0.149657994508743 0.0461426004767418 0.601073980331421 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP35G2.05c /GEN=cki2 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPBP35G2.05c // |cki2||serine/threonine protein kinase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.12862342998876 1.55799894741713 -1.41006837710184 -1.02228560492183 -16.226939773393 Max fold change at or above threshold 3 16.226939773393 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1779229_at SPBC1198.08.S1 --- 16.2173530887226 --- --- --- --- 0.674872398376465 2.19252347946167 1.32127821445465 4.82031917572021 0.805419981479645 0.725830018520355 0.904784977436066 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1198.08 /DEF=peptidase family M20 --- --- --- --- --- --- D89150 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0604. // gb // 9 // --- /// SPBC1198.08 // |||peptidase family M20|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 16.2173530887226 3.2487970833245 5.5421978223852 1.95781931167023 7.14256381994051 Max fold change at or above threshold 1 16.2173530887226 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778712_at SPAC1002.06c.S1 --- 16.2140288374709 --- --- --- --- 12.1544437408447 3.37677812576294 8.84989547729492 4.18560075759888 0.0375977009534836 0.366210997104645 0.24609400331974 0.194580003619194 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1002.06c /DEF=sequence orphan --- --- --- --- --- --- SPAC1002.06c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -16.2140288374709 -3.59942030188868 -12.3581214040175 -1.37339969404473 -2.90387078098134 Max fold change at or above threshold 4 16.2140288374709 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1777001_at SPBP23A10.12.S1 --- 16.2098680998198 --- --- --- --- 7.00287914276123 0.673598110675812 6.92098999023438 0.432013332843781 0.466064006090164 0.753906011581421 0.030273400247097 0.805419981479645 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP23A10.12 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBP23A10.12 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.28375017912137 -10.3962274118247 -8.84541019920932 -1.01183199985008 -16.2098680998198 Max fold change at or above threshold 2 16.2098680998198 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1769315_at SPBC32H8.10.S1 --- 16.190674806418 --- --- --- --- 4.72370004653931 2.89945197105408 4.8739972114563 1.71691858768463 0.696289002895355 0.366210997104645 0.466064006090164 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32H8.10 /GEN=cdk9 /DEF=cyclin-dependent protein kinase (PMID 12475973) --- --- --- --- --- --- SPBC32H8.10 // |cdk9||cyclin-dependent protein kinase Cdk9 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -16.190674806418 -1.6291699582187 -1.18073921492532 1.03181767754858 -2.75126618141487 Max fold change at or above threshold 3 16.190674806418 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773270_at SPAPYUG7.06.S1 --- 16.1835823107784 --- --- --- --- 7.3572244644165 6.66748762130737 1.45265698432922 0.454610377550125 0.466064006090164 0.5 0.753906011581421 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPYUG7.06 /DEF=DUF862 --- --- --- --- --- --- SPAPYUG7.06 // |||DUF862|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.18208747155147 -1.10344778757518 -1.8828808292027 -5.06466739483841 -16.1835823107784 Max fold change at or above threshold 2 16.1835823107784 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778853_at SPAC1F3.01.S1 --- 16.1681044457567 --- --- --- --- 7.7186131477356 5.30135107040405 1.27786993980408 0.477397531270981 0.171387001872063 0.144775390625 0.71875 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F3.01 /DEF=exosome (RNase complex) (predicted) --- --- --- --- --- --- SPAC1F3.01 // |rrp6|SPAC3H8.11|exosome |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -13.4165254184608 -1.45597094876935 -6.01184627236473 -6.0402181061705 -16.1681044457567 Max fold change at or above threshold 2 16.1681044457567 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772479_at SPBC2A9.03.S1 --- 16.1368719192399 --- --- --- --- 0.756567299365997 0.930603384971619 12.2086296081543 3.91554808616638 0.870360970497131 0.780517995357513 0.0805663987994194 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2A9.03 /DEF=WD repeat protein --- --- --- --- --- --- SPBC2A9.03 // |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.27463385007894 1.23003384596646 11.1706724279102 16.1368719192399 5.17541280127704 Max fold change at or above threshold 2 16.1368719192399 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775472_at SPBC6B1.05c.S1 --- 16.1346759596306 --- --- --- --- 0.433963865041733 0.596947193145752 7.00186634063721 0.853420674800873 0.888427972793579 0.633789002895355 0.398925989866257 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC6B1.05c /DEF=involved in autophagy (predicted) --- --- --- --- --- --- SPBC6B1.05c // |||ubiquitin-like conjugating enzyme|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.04536704621683 1.37556889232781 -1.16043684300915 16.1346759596306 1.96657082201718 Max fold change at or above threshold 1 16.1346759596306 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-DapX-5_at AFFX-DapX-5 --- 16.1333157488237 --- --- --- --- 6.06281709671021 1.20178711414337 0.845349431037903 0.375794857740402 0.108978629112244 0.34066116809845 0.34066116809845 0.54459136724472 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1428-1926 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. --- --- --- --- --- --- L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-DapX-5 // --- // unknown // --- // --- /// AFFX-DapX-5 // --- // unknown // --- // --- /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-DapX-5 // --- // unknown // --- // --- /// AFFX-DapX-5 // --- // unknown // --- // --- /// AFFX-DapX-5 // --- // gb // --- // --- /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// L38424 // Bacillus subtilis /REF=L38424 /DEF=B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1439-1846 of L38424 /LEN=1931 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-DapX-5 // B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1428-1926 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // --- // --- /// L38424 // Bacillus subtilis /REF=L38424 /DEF=B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 /LEN=1931 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-DapX-5 // B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1428-1926 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // --- // --- /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-DapX-5 // --- // unknown // --- // --- /// AFFX-DapX-5 // --- // affx // --- // --- /// AFFX-DapX-5 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-DapX-5 // --- // affx // --- // --- /// AFFX-DapX-5 // --- // affx // --- // --- /// AFFX-DapX-5 // --- // affx // --- // --- /// AFFX-DapX-5 // --- // affx // --- // --- /// AFFX-DapX-5 // --- // affx // --- // --- /// AFFX-DapX-5 // --- // affx // --- // --- /// AFFX-DapX-5 // --- // affx // --- // --- /// AFFX-DapX-5 // --- // affx // --- // --- /// AFFX-DapX-5 // --- // affx // --- // --- /// AFFX-DapX-5 // --- // affx // --- // --- /// AFFX-DapX-5 // --- // affx // --- // --- AK044032 // gb // 1 // Cross Hyb Matching Probes /// 50812173 // gb // 19 // Negative Strand Matching Probes AFFX_control No -2.15052646222711 -5.04483450135156 -3.36363238940695 -7.17196566781432 -16.1333157488237 Max fold change at or above threshold 1 16.1333157488237 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775920_at SPAC17A2.05.S1 --- 16.1217358594738 --- --- --- --- 0.464432626962662 1.08865141868591 0.560536980628967 4.9992470741272 0.870360970497131 0.718505859375 0.780517995357513 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A2.05 /DEF=fumerate reductase (predicted) --- --- --- --- --- --- SPAC17A2.05 // |||fumerate reductase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 16.1217358594738 2.34404595087467 13.4378692502772 1.20692851467998 10.764202995 Max fold change at or above threshold 1 16.1217358594738 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770652_at SPBP23A10.02.S1 --- 16.1124897952486 --- --- --- --- 4.6820216178894 7.42571496963501 3.8040292263031 0.290583372116089 0.398925989866257 0.0239257998764515 0.219482004642487 0.805419981479645 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP23A10.02 /DEF=hypothetical protein --- --- --- --- --- --- SPBP23A10.02 // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- SPBP23A10.03c // sanger // 1 // Negative Strand Matching Probes No No -2.74306732965744 1.5860061263413 -5.0131308048933 -1.23080590062647 -16.1124897952486 Max fold change at or above threshold 3 16.1124897952486 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1772012_at SPAC1039.09.S1 --- 16.1102463268192 --- --- --- --- 4.65943193435669 1.8632937669754 9.80861377716064 7.12600803375244 0.533936023712158 0.633789002895355 0.398925989866257 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1039.09 /GEN=isp5 /DEF=involved in sexual differentiation (PMID 7954893) --- --- --- --- --- --- D14062 // Schizosaccharomyces pombe mRNA for ORF. // gb // 11 // --- /// SPAC1039.09 // |isp5||amino acid permease family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -16.1102463268192 -2.50064268820054 1.43826697887958 2.1051093599707 1.52937270769174 Max fold change at or above threshold 3 16.1102463268192 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770476_at SPBC409.12c.S1 --- 16.0650856742389 --- --- --- --- 7.92611169815063 1.29982256889343 2.54222726821899 3.11596393585205 0.0461426004767418 0.828612983226776 0.432372987270355 0.274170011281967 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC409.12c /DEF=sequence orphan --- --- --- --- --- --- SPBC409.12c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -16.0650856742389 -6.0978412652877 -1.44362528550494 -3.11778250404159 -2.54371098681643 Max fold change at or above threshold 3 16.0650856742389 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1774217_at SPCC550.13.S1 --- 16.0449725317018 --- --- --- --- 10.8715076446533 0.677564740180969 1.44479775428772 1.88707590103149 0.171387001872063 0.805419981479645 0.850341975688934 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC550.13 /GEN=dfp1 /DEF=essential (PMID 10409743) --- --- --- --- --- --- AB028068 // Schizosaccharomyces pombe mRNA for Him1/ Dfp1/ Rad35, complete cds. // gb // 11 // --- /// SPCC550.13 // |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory subunit Dfp1p |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -8.25151271704747 -16.0449725317018 -8.27071953328296 -7.52458786178896 -5.76103358572427 Max fold change at or above threshold 1 16.0449725317018 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776245_at SPBP22H7.09c.S1 --- 16.0380094360112 --- --- --- --- 0.440199613571167 0.737675845623016 7.05992555618286 3.03155589103699 0.805419981479645 0.828612983226776 0.274170011281967 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP22H7.09c /DEF=involved in chromosome segregation (predicted) --- --- --- --- --- --- SPBP22H7.09c // |mis15||kinetochore protein Mis15p |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.41642208249767 1.6757757682669 10.0111290987369 16.0380094360112 6.88677544817262 Max fold change at or above threshold 2 16.0380094360112 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773667_at YHR043C.S1 2-deoxyglucose-6-phosphate phosphatase, member of a family of low molecular weight phosphatases, similar to Dog1p, induced by oxidative and osmotic stress, confers 2-deoxyglucose resistance when overexpressed 16.02952318483 1.10609948635101 0.12790459394455 DOG2 6006 // glucose metabolism // inferred from sequence similarity /// 6950 // response to stress // inferred from expression pattern 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3850 // 2-deoxyglucose-6-phosphatase activity // inferred from direct assay 0.130308508872986 2.08878326416016 0.12341570854187 0.125500679016113 0.989013671875 0.55908203125 0.989257991313934 0.989257991313934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR043C /GEN=DOG2 /DB_XREF=GI:6321833 /SEG=NC_001140:-192797,193537 /DEF=2-deoxyglucose-6-phosphate phosphatase, member of a family of low molecular weight phosphatases, similar to Dog1p, induced by oxidative and osmotic stress, confers 2-deoxyglucose resistance when overexpressed /NOTE=Dog2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: 2-deoxyglucose-6-phosphatase activity [goid GO:0003850] [evidence IDA] [pmid 8553694]; go_process: glucose metabolism [goid GO:0006006] [evidence ISS] [pmid 8553694]; go_process: response to stress [goid GO:0006950] [evidence IEP] [pmid 10960096] --- --- --- --- --- --- S0001085 // DOG2 SGDID:S0001085, Chr VIII from 193537-192797, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016590 // cdna:Genscan chromosome:SGD1:VIII:192797:193375:-1 // ensembl // 10 // --- /// YHR043C // cdna:known chromosome:SGD1:VIII:192797:193537:-1 gene:YHR043C // ensembl // 11 // --- --- No cerevisiae_gene 1.21676354647807 16.02952318483 1.66943103465626 -1.05585026746232 -1.03830919397859 Max fold change at or above threshold 0 16.02952318483 Max fold change at or above threshold -0.496022864378264 1.4999935104142 -0.503047791450691 -0.500922854585249 0.617002040147781 0.981191727693515 1.59025686115804 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771318_at SPBC30D10.17c.S1 --- 16.0292524273855 --- --- --- --- 5.46773767471313 1.79916894435883 5.62844228744507 1.40795040130615 0.601073980331421 0.753906011581421 0.780517995357513 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30D10.17c /DEF=glucan synthase regulator (predicted) (PMID 7937796) --- --- --- --- --- --- SPBC30D10.17c // |||glucan synthase regulator |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -14.994430789009 -3.0390351566799 -16.0292524273855 1.02939142700191 -3.88347321726726 Max fold change at or above threshold 2 16.0292524273855 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774542_at SPAC1F8.02c.S1 --- 16.0266779955945 --- --- --- --- 4.57243680953979 7.92087173461914 0.619967460632324 1.23850619792938 0.274170011281967 0.194580003619194 0.432372987270355 0.35791015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F8.02c /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPAC1F8.02c // |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.33652575318903 1.73230862766507 -16.0266779955945 -7.37528515589548 -3.69189659057363 Max fold change at or above threshold 2 16.0266779955945 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770530_at SPAC3G9.02.S1 --- 16.0037922782472 --- --- --- --- 0.413681209087372 5.61309337615967 6.62046813964844 4.65255308151245 0.45751953125 0.149657994508743 0.000732421991415322 0.149657994508743 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G9.02 /DEF=3-oxoacyl-(acyl carrier protein) reductase activity (predicted) --- --- --- --- --- --- SPAC3G9.02 // |||3-oxoacyl-[acyl carrier protein] reductase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.51158432024139 13.5686447749048 3.68473373149373 16.0037922782472 11.2467111855927 Max fold change at or above threshold 3 16.0037922782472 Max fold change at or above threshold AAAAPA No 3 0 AAPA 3 1 0 No No x = 1
1779101_at SPAC821.12.S1 --- 16.0029683012669 --- --- --- --- 6.33693981170654 1.68619871139526 2.55550622940063 4.40165090560913 0.129638999700546 0.725830018520355 0.533936023712158 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC821.12 /GEN=orb6 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPAC821.12 // |orb6||serine/threonine protein kinase Orb6|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.97177883407524 -3.75812160742489 -16.0029683012669 -2.47971996264427 -1.43967341972332 Max fold change at or above threshold 3 16.0029683012669 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770955_at SPAC6G10.02c.S1 --- 15.9964565440746 --- --- --- --- 0.631125748157501 10.095775604248 0.792095899581909 2.33346152305603 0.780517995357513 0.144775390625 0.567627012729645 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G10.02c /GEN=tea3 /DEF=kelch repeat protein --- --- --- --- --- --- SPAC6G10.02c // |tea3||cell end marker Tea3|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.52347479799832 15.9964565440746 3.28402357531492 1.25505242322048 3.69730046645744 Max fold change at or above threshold 1 15.9964565440746 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769453_at SPAC22E12.04.S1 --- 15.9954643663874 --- --- --- --- 0.837265849113464 3.85041809082031 13.3924560546875 10.1886758804321 0.633789002895355 0.567627012729645 0.334473013877869 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22E12.04 /GEN=ccs1 /DEF=metallochaperone (PMID 15107426) --- --- --- --- --- --- SPAC22E12.04 // |ccs1|pccs|metallochaperone |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.09213668799731 4.59879988524232 13.3467819084373 15.9954643663874 12.1689853840574 Max fold change at or above threshold 3 15.9954643663874 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770141_at SPBC4.05.S1 --- 15.9944026511306 --- --- --- --- 2.4553337097168 1.51221632957459 0.990046679973602 2.14061498641968 0.696289002895355 0.828612983226776 0.888427972793579 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4.05 /GEN=mlo2 /DEF=zinc finger protein --- --- --- --- --- --- L42550 // Schizosaccharomyces pombe (clone cDNA123) ORF mRNA, complete cds. // gb // 9 // --- /// SPBC4.05 // |mlo2||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 9 // --- --- No No -15.9944026511306 -1.62366565001155 1.22243770304093 -2.48001812377399 -1.14702257308938 Max fold change at or above threshold 0 15.9944026511306 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780039_at SPAC26H5.13c.S1 --- 15.9758665172275 --- --- --- --- 8.48673629760742 7.17439699172974 16.7960338592529 7.43910837173462 0.030273400247097 0.466064006090164 0.0805663987994194 0.149657994508743 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26H5.13c /DEF=hypothetical protein --- --- --- --- --- --- SPAC26H5.13c // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -15.9758665172275 -1.1829198059977 -1.32246116909054 1.97909222936361 -1.14082708216126 Max fold change at or above threshold 4 15.9758665172275 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1778924_at SPAC6G10.12c.S1 --- 15.9633631384769 --- --- --- --- 2.88608908653259 0.571927130222321 5.26394510269165 0.448340386152267 0.334473013877869 0.932372987270355 0.194580003619194 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G10.12c /GEN=ace2 /DEF=transcrption factor --- --- --- --- --- --- SPAC6G10.12c // |ace2||transcription factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.91742983981362 -5.04625315712984 -15.9633631384769 1.82390250088082 -6.43727216122887 Max fold change at or above threshold 2 15.9633631384769 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779595_at SPAC1783.01.S1 --- 15.9520006132555 --- --- --- --- 10.0220174789429 0.628260850906372 7.76242685317993 3.09867906570435 0.00585938012227416 0.326171875 0.000732421991415322 0.00805663969367743 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1783.01 /DEF=oxidoreductase (predicted) --- --- --- --- --- --- SPAC1783.01 // |||FAD binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.3785821280302 -15.9520006132555 -1.99043067910301 -1.29109332281016 -3.23428701922211 Max fold change at or above threshold 3 15.9520006132555 Max fold change at or above threshold PPAPPP No 3 0 PAPP 1 3 0 No No 2 < x = 3
1776852_at SPAC13G7.12c.S1 --- 15.9498306498529 --- --- --- --- 0.879779279232025 3.33327603340149 14.0323305130005 1.61542963981628 0.753906011581421 0.567627012729645 0.129638999700546 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G7.12c /DEF=choline kinase (predicted) --- --- --- --- --- --- SPAC13G7.12c // |||choline kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.98366904022677 3.78876396851624 7.57711601980644 15.9498306498529 1.83617604773145 Max fold change at or above threshold 2 15.9498306498529 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778581_at SPAC24C9.08.S1 --- 15.9124344438021 --- --- --- --- 0.443867146968842 0.251264780759811 7.06300687789917 3.29787921905518 0.828612983226776 0.953857004642487 0.633789002895355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24C9.08 /DEF=gly x carboxypeptidase activity (predicted) --- --- --- --- --- --- SPAC24C9.08 // |||vacuolar carboxypeptidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.83519015745573 -1.76653148772626 9.54685756604634 15.9124344438021 7.42987905632646 Max fold change at or above threshold 2 15.9124344438021 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771989_at SPCC320.07c.S1 --- 15.9092269500333 --- --- --- --- 0.61972564458847 1.11220061779022 0.981323421001434 4.91688537597656 0.633789002895355 0.753906011581421 0.567627012729645 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC320.07c /GEN=mde7 /DEF=RNA-binding protein --- --- --- --- --- --- SPCC320.07c // |mde7||RNA-binding protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 15.9092269500333 1.79466611960004 4.47282445557108 1.58348041519741 7.93397113531041 Max fold change at or above threshold 1 15.9092269500333 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776831_at SPBC1105.08.S1 --- 15.8804962911136 --- --- --- --- 0.376538038253784 5.97961091995239 2.45561385154724 2.94083523750305 0.696289002895355 0.753906011581421 0.780517995357513 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1105.08 /DEF=EMP70 family --- --- --- --- --- --- SPBC1105.08 // |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.06129508679396 15.8804962911136 4.85515999024894 6.52155586440957 7.81019429309542 Max fold change at or above threshold 2 15.8804962911136 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780048_at SPAC57A10.09c.S1 --- 15.8652540495889 --- --- --- --- 4.01124620437622 3.59087514877319 0.252832144498825 1.28169441223145 0.466064006090164 0.633789002895355 0.850341975688934 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC57A10.09c /DEF=HMG box --- --- --- --- --- --- SPAC57A10.09c // |||HMG box|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -9.58794741053998 -1.1170664637969 -5.28001572921522 -15.8652540495889 -3.12964320207388 Max fold change at or above threshold 2 15.8652540495889 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779120_at SPBC27B12.07.S1 --- 15.8491177823915 --- --- --- --- 3.98911499977112 0.418586313724518 0.251693189144135 0.388134509325027 0.171387001872063 0.533936023712158 0.962401986122131 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC27B12.07 /DEF=conserved yeast protein --- --- --- --- --- --- SPBC27B12.07 // |||conserved yeast protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.17963752056418 -9.52996997029496 -8.40835832446551 -15.8491177823915 -10.2776612332365 Max fold change at or above threshold 1 15.8491177823915 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770090_at SPAC19B12.10.S1 --- 15.8407036940564 --- --- --- --- 6.10054874420166 1.68953573703766 0.770843029022217 4.21504545211792 0.432372987270355 0.665526986122131 0.870360970497131 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19B12.10 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC19B12.10 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.05022902741614 -3.61078408137021 -15.8407036940564 -7.91412585249679 -1.44732691817981 Max fold change at or above threshold 2 15.8407036940564 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772569_at SPBP35G2.03c.S1 --- 15.8404291077625 --- --- --- --- 10.6177377700806 1.16882526874542 1.31606364250183 0.977372646331787 0.194580003619194 0.805419981479645 0.633789002895355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP35G2.03c /GEN=sgo1 /DEF=shugoshin --- --- --- --- --- --- SPBP35G2.03c // |sgo1||shugoshin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -4.65208899949733 -9.08411039186147 -15.8404291077625 -8.06779963155604 -10.8635511848325 Max fold change at or above threshold 1 15.8404291077625 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773713_at SPAC458.05.S1 --- 15.8299050570451 --- --- --- --- 7.7681770324707 0.490727961063385 5.48200750350952 3.23141622543335 0.24609400331974 0.696289002895355 0.111571997404099 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC458.05 /GEN=vps34 /DEF=phoshatidylinositol kinase --- --- --- --- --- --- U32583 // Schizosaccharomyces pombe phosphatidylinositol 3-kinase (Spvps34) mRNA, complete cds. // gb // 10 // --- /// SPAC458.05 // |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.10670758713501 -15.8299050570451 -2.86653008268501 -1.41703144833304 -2.40395433164261 Max fold change at or above threshold 3 15.8299050570451 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779728_at SPBC19C7.09c.S1 --- 15.8147998995633 --- --- --- --- 7.13100337982178 4.3235182762146 12.5167675018311 6.31305932998657 0.633789002895355 0.601073980331421 0.303710997104645 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C7.09c /GEN=uve1 /DEF=endonuclease activity (PMID 8065916) --- --- --- --- --- --- D78571 // Schizosaccharomyces pombe mRNA for UV-endonuclease, complete cds. // gb // 11 // --- /// SPBC19C7.09c // |uve1|uvde|endonuclease |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.22717040387704 -1.64935196852348 -15.8147998995633 1.75526035189509 -1.12956381479737 Max fold change at or above threshold 4 15.8147998995633 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772549_at YAL062W.S1 NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh1p; expression regulated by nitrogen and carbon sources 15.7932531042754 3249.40905761719 244.41333770752 GDH3 6537 // glutamate biosynthesis // inferred from genetic interaction /// 6537 // glutamate biosynthesis // inferred from mutant phenotype 5625 // soluble fraction // inferred from direct assay /// 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4352 // glutamate dehydrogenase activity // inferred from sequence similarity /// 4352 // glutamate dehydrogenase activity // inferred from mutant phenotype 228.437576293945 2891.04565429688 3607.7724609375 260.389099121094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL062W /GEN=GDH3 /DB_XREF=GI:6319256 /SEG=NC_001133:+31568,32941 /DEF=NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh1p; expression regulated by nitrogen and carbon sources /NOTE=Gdh3p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 4126]; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 11562373]; go_function: glutamate dehydrogenase activity [goid GO:0004352] [evidence IMP,ISS] [pmid 9287019]; go_process: glutamate biosynthesis [goid GO:0006537] [evidence IGI,IMP] [pmid 9287019] --- --- --- --- --- --- S0000058 // GDH3 SGDID:S0000058, Chr I from 31568-32941, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018216 // cdna:GeneFinder chromosome:SGD1:I:31886:32941:1 // ensembl // 11 // --- /// GENSCAN00000020324 // cdna:Genscan chromosome:SGD1:I:31886:32941:1 // ensembl // 11 // --- /// YAL062W // cdna:known chromosome:SGD1:I:31568:32941:1 gene:YAL062W // ensembl // 11 // --- --- No cerevisiae_gene -1.30691841007453 12.6557359835441 2.6781895659475 15.7932531042754 1.13986982065523 Max fold change at or above threshold 4 15.7932531042754 Max fold change at or above threshold -0.863021821328139 0.650266813143039 1.05761723751477 -0.844862229329666 1746.91119766235 1759.48462001988 1.0071975166078 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774132_at SPBC725.07.S1 --- 15.7812043257879 --- --- --- --- 8.8993558883667 8.0694055557251 6.18933582305908 0.563921213150024 0.219482004642487 0.366210997104645 0.171387001872063 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC725.07 /GEN=pex5 /DEF=peroxisomal targeting signal receptor (predicted) --- --- --- --- --- --- SPBC725.07 // |pex5||peroxisomal targeting signal receptor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -10.3081910350898 -1.10285148353372 -2.02070323838899 -1.43785313041363 -15.7812043257879 Max fold change at or above threshold 3 15.7812043257879 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775075_at SPAC29E6.04.S1 --- 15.7699742550457 --- --- --- --- 0.341329514980316 4.82028722763062 1.24639582633972 5.38275766372681 0.725830018520355 0.129638999700546 0.4658203125 0.00585938012227416 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29E6.04 /DEF=localization spindle pole body --- --- --- --- --- --- SPAC29E6.04 // |nnf1|SPAC30.08|kinetochore protein Nnf1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 14.3178743116067 14.1220932151402 2.51995762202048 3.65159112129989 15.7699742550457 Max fold change at or above threshold 2 15.7699742550457 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1775204_at SPBC16C6.07c.S1 --- 15.7624654839697 --- --- --- --- 10.9416408538818 4.45442819595337 5.81372976303101 2.72905421257019 0.149657994508743 0.303710997104645 0.149657994508743 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16C6.07c /GEN=rpt1 /DEF=19S proteasome regulatory subunit --- --- --- --- --- --- SPBC16C6.07c // |rpt1||19S proteasome regulatory subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.73783599911572 -2.45635138171534 -15.7624654839697 -1.88203464898881 -4.00931604930528 Max fold change at or above threshold 4 15.7624654839697 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779991_at SPBC29A3.15c.S1 --- 15.7618964550245 --- --- --- --- 0.459050565958023 4.68207359313965 1.45276606082916 1.80569398403168 0.696289002895355 0.533936023712158 0.633789002895355 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A3.15c /GEN=rsm23 /DEF=mitochondrial ribosomal protein subunit s23 --- --- --- --- --- --- SPBC29A3.15c // |rsm23||mitochondrial ribosomal protein subunit S23|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.8651924560258 10.1994724336486 15.7618964550245 3.16471902784237 3.93354048102142 Max fold change at or above threshold 1 15.7618964550245 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779938_at SPCC548.05c.S1 --- 15.7568473955049 --- --- --- --- 6.81372880935669 5.33994913101196 0.432429701089859 0.705211460590363 0.129638999700546 0.0952147990465164 0.633789002895355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC548.05c /DEF=zinc finger protein --- --- --- --- --- --- SPCC548.05c // |||zinc finger protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.92642226812657 -1.27599133291096 -1.89966809641609 -15.7568473955049 -9.661965509824 Max fold change at or above threshold 2 15.7568473955049 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1770723_at SPCC1450.02.S1 --- 15.7543920162386 --- --- --- --- 8.60287094116211 18.0583972930908 13.3033962249756 8.97521209716797 0.194580003619194 0.303710997104645 0.194580003619194 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1450.02 /DEF=bromodomain protein --- --- --- --- --- --- SPCC1450.02 // ||SPCC191.13|bromodomain protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.01359358833877 2.09911289110324 -15.7543920162386 1.5463903057435 1.04328103473276 Max fold change at or above threshold 4 15.7543920162386 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777469_at SPAC29B12.03.S1 --- 15.7491897769285 --- --- --- --- 5.5046558380127 1.74184906482697 0.727832913398743 0.490468204021454 0.665526986122131 0.633789002895355 0.805419981479645 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29B12.03 /GEN=spd1 /DEF=S-phase inhibitor (PMID 8887552) --- --- --- --- --- --- SPAC29B12.03 // |spd1||ribonucleotide reductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -15.7491897769285 -3.16023698560789 -13.3535927775086 -7.56307627297005 -11.2232674674502 Max fold change at or above threshold 1 15.7491897769285 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772334_at SPBC1198.11c.S1 --- 15.7169187336983 --- --- --- --- 0.378179967403412 5.94382381439209 5.47930383682251 0.822101712226868 0.962401986122131 0.194580003619194 0.398925989866257 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1198.11c /GEN=reb1 /DEF=DNA binding --- --- --- --- --- --- SPBC1198.11c // |reb1|SPBC660.01c|RNA polymerase I transcription termination factor Reb1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.26229773028184 15.7169187336983 4.996540635515 14.4886147049075 2.1738372814177 Max fold change at or above threshold 2 15.7169187336983 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771570_at SPBC27B12.10c.S1 --- 15.7131326151874 --- --- --- --- 7.19886445999146 7.42558479309082 0.642695486545563 1.85879516601563 0.0676269978284836 0.432372987270355 0.71875 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC27B12.10c /GEN=tom7 /DEF=mitochondrial TOM complex component --- --- --- --- --- --- SPBC27B12.10c // |tom7||mitochondrial TOM complex component|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.68418496070926 1.03149390217852 -15.7131326151874 -11.2010502807244 -3.87286592498646 Max fold change at or above threshold 2 15.7131326151874 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777155_at SPMIT.07.S1 --- 15.6992057485227 --- --- --- --- 0.246691852807999 3.87286615371704 0.981733322143555 3.77611660957336 0.870360970497131 0.24609400331974 0.601073980331421 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPMIT.07 /GEN=atp6 /DEF=ATPase (subunit 6) --- --- --- --- --- --- SPMIT.07 // |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr mitochondrial|||Manual // sanger // 11 // --- --- No No 8.50349346217897 15.6992057485227 7.80034031582807 3.97959361433651 15.3070179115819 Max fold change at or above threshold 2 15.6992057485227 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773003_at YLL013C.S1 Protein that regulates degradation of specific mRNAs such as COX17, binds almost exclusively to cytoplasmic mRNAs encoding mitochondrial proteins, member of the PUF protein family that contains Pumilio homology domains 15.6987725753873 116.886978149414 7.26684665679932 PUF3 288 // mRNA catabolism, deadenylylation-dependent decay // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 3729 // mRNA binding // inferred from direct assay 7.69194316864014 113.019889831543 120.754066467285 6.8417501449585 0.0239257998764515 0.000244141003349796 0.00195312988944352 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL013C /GEN=PUF3 /DB_XREF=GI:6323016 /SEG=NC_001144:-122074,124713 /DEF=member of the PUF protein family, which is named for the founding members, PUmilio and Fbf /NOTE=Puf3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12730603]; go_function: mRNA binding [goid GO:0003729] [evidence IDA] [pmid 11101532]; go_process: mRNA catabolism, deadenylation-dependent [goid GO:0000288] [evidence IMP] [pmid 11101532] --- --- --- --- --- --- S0003936 // PUF3 SGDID:S0003936, Chr XII from 124713-122074, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017720 // cdna:Genscan chromosome:SGD1:XII:122074:124701:-1 // ensembl // 11 // --- /// GENEFINDER00000024639 // cdna:GeneFinder chromosome:SGD1:XII:122074:124713:-1 // ensembl // 11 // --- /// YLL013C // cdna:known chromosome:SGD1:XII:122074:124713:-1 gene:YLL013C // ensembl // 11 // --- --- No cerevisiae_gene 3.06932204686404 14.6932819644745 1.82137109177547 15.6987725753873 -1.124265429995 Max fold change at or above threshold 4 15.6987725753873 Max fold change at or above threshold -0.858228400978097 0.803911644612314 0.925961728310229 -0.871644971944447 62.0769124031067 63.3688761319081 1.02081230652085 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1770912_at SPCC1827.07c.S1 --- 15.6911719214968 --- --- --- --- 0.52718448638916 7.22013807296753 8.27214241027832 4.24646902084351 0.828612983226776 0.466064006090164 0.111571997404099 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1827.07c /DEF=EXS family --- --- --- --- --- --- SPCC1827.07c // ||SPCP1E11.01c|EXS family protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 8.14822546595199 13.6956573256174 -1.19095018286342 15.6911719214968 8.05499617397471 Max fold change at or above threshold 3 15.6911719214968 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771913_at SPBC8D2.05c.S1 --- 15.6893014391099 --- --- --- --- 2.83454179763794 1.07656109333038 1.10906827449799 2.14814591407776 0.533936023712158 0.865478515625 0.633789002895355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8D2.05c /DEF=involved in spindle assembly (mitotic) (predicted) --- --- --- --- --- --- SPBC8D2.05c // |sfi1||spindle pole body protein Sfi1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -15.6893014391099 -2.63295953680545 -2.57061169631965 -2.55578656681076 -1.31952945051913 Max fold change at or above threshold 1 15.6893014391099 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770497_at SPBC21H7.07c.S1 --- 15.644072352661 --- --- --- --- 10.2921686172485 0.967709064483643 4.70506286621094 0.657895743846893 0.303710997104645 0.870360970497131 0.274170011281967 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21H7.07c /GEN=his5 /DEF=imidazoleglycerol-phosphate dehydratase (PMID 8159167) --- --- --- --- --- --- U07831 // Schizosaccharomyces pombe imidazoleglycerol-phosphate dehydratase (his5) mRNA, complete cds. // gb // 11 // --- /// SPBC21H7.07c // |his5||imidazoleglycerol-phosphate dehydratase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.95818098917421 -10.6356021608006 -2.45868439305384 -2.1874667586614 -15.644072352661 Max fold change at or above threshold 2 15.644072352661 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777608_at SPCC1020.08.S1 --- 15.6420807606891 --- --- --- --- 4.62218141555786 0.803581774234772 1.20318877696991 0.470673590898514 0.567627012729645 0.976073980331421 0.870360970497131 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1020.08 /DEF=flavodoxin --- --- --- --- --- --- SPCC1020.08 // |||flavodoxin|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -10.4148909988143 -5.75197392942297 -15.6420807606891 -3.84160948309232 -9.82035428572514 Max fold change at or above threshold 1 15.6420807606891 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779013_at SPCC1235.10c.S1 --- 15.612056574409 --- --- --- --- 0.456976175308228 1.1119909286499 7.13433790206909 0.499464303255081 0.962401986122131 0.888427972793579 0.24609400331974 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1235.10c /GEN=sec6 /DEF=localization exocyst (predicted) --- --- --- --- --- --- SPCC1235.10c // |sec6||exocyst complex subunit Sec6p|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.11212695047359 2.43336740235937 3.35455004103413 15.612056574409 1.09297668071688 Max fold change at or above threshold 1 15.612056574409 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777057_at SPBC11B10.03.S1 --- 15.6001061859732 --- --- --- --- 3.92125058174133 2.86854791641235 1.70236003398895 3.39395928382874 0.5 0.533936023712158 0.601073980331421 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11B10.03 /DEF=involved in intracellular protein transport --- --- --- --- --- --- SPBC11B10.03 // |||Golgi transport complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -15.6001061859732 -1.36698102873093 1.05767360533284 -2.3034202539125 -1.15536170407965 Max fold change at or above threshold 3 15.6001061859732 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770978_at SPAC23H4.10c.S1 --- 15.5800666871003 --- --- --- --- 0.365401566028595 1.72563970088959 2.78760981559753 0.577985763549805 0.870360970497131 0.665526986122131 0.567627012729645 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H4.10c /GEN=thi4 /DEF=bifunctional enzyme --- --- --- --- --- --- SPAC23H4.10c // |thi4||bifunctional enzyme|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 15.5800666871003 4.72258430538457 14.7484983494608 7.62889400254893 1.58178239308524 Max fold change at or above threshold 1 15.5800666871003 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769872_at SPBC1198.09.S1 --- 15.5799242387482 --- --- --- --- 8.61204814910889 2.99497723579407 3.60043907165527 0.552765727043152 0.366210997104645 0.696289002895355 0.327392578125 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1198.09 /GEN=ubc16 /DEF=ubiquitin conjugating enzyme --- --- --- --- --- --- SPBC1198.09 // |ubc16||ubiquitin conjugating enzyme|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -13.198375375927 -2.87549703088997 -2.57824649920964 -2.39194386509909 -15.5799242387482 Max fold change at or above threshold 3 15.5799242387482 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769789_at SPCC1672.08c.S1 --- 15.5752882933606 --- --- --- --- 0.355811536312103 3.71556520462036 1.13128566741943 5.54186725616455 0.969726979732513 0.533936023712158 0.633789002895355 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1672.08c /GEN=tfa2 /DEF=transcription initiation factor activity --- --- --- --- --- --- AB000475 // Yeast mRNA for S.pombe TFA2 homolog, partial cds. // gb // 11 // --- /// AB176673 // Schizosaccharomyces pombe spTFIIEbeta mRNA for general transcription factor spTFIIE beta subunit, complete cds. // gb // 11 // --- /// SPCC1672.08c // |tfa2||transcription factor TFIIE beta subunit Tfa2|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.28239624345446 10.4425090966169 -1.2542092875989 3.17945190632357 15.5752882933606 Max fold change at or above threshold 2 15.5752882933606 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772157_at SPAC821.13c.S1 --- 15.5545696782717 --- --- --- --- 0.826265931129456 8.44044399261475 12.8522109985352 6.85526132583618 0.888427972793579 0.334473013877869 0.303710997104645 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC821.13c /DEF=P-type ATPase (PMID 12707717) --- --- --- --- --- --- SPAC821.13c // ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.12439568728223 10.2151664187306 11.2445273350828 15.5545696782717 8.29667673271419 Max fold change at or above threshold 3 15.5545696782717 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770169_at SPBC36B7.03.S1 --- 15.5540844583082 --- --- --- --- 6.6528844833374 6.19513988494873 1.30645632743835 0.42772588133812 0.303710997104645 0.533936023712158 0.533936023712158 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC36B7.03 /DEF=localization signal recognition particle (predicted) --- --- --- --- --- --- SPBC36B7.03 // |sec63||ER protein translocation subcomplex subunit Sec63 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.98309538770212 -1.07388769372275 -7.3460904306501 -5.09231295651658 -15.5540844583082 Max fold change at or above threshold 2 15.5540844583082 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775870_at SPAC15A10.02.S1 --- 15.5435512068443 --- --- --- --- 6.82830429077148 5.04130554199219 6.89310455322266 5.22294425964355 0.334473013877869 0.567627012729645 0.366210997104645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15A10.02 /GEN=taf12 /DEF=transcription factor TFIID complex (predicted) --- --- --- --- --- --- SPAC15A10.02 // |taf12||transcription factor TFIID complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.77415059752273 -1.35447142290708 -15.5435512068443 1.00948994943573 -1.30736687035551 Max fold change at or above threshold 4 15.5435512068443 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777161_at SPCC162.07.S1 --- 15.5089418562706 --- --- --- --- 14.0173349380493 11.0632085800171 4.88339900970459 6.09846210479736 0.0676269978284836 0.194580003619194 0.366210997104645 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC162.07 /DEF=epsin --- --- --- --- --- --- SPCC162.07 // |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.82098120502173 -1.26702256733802 -15.5089418562706 -2.87040541028763 -2.29850324510872 Max fold change at or above threshold 4 15.5089418562706 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779291_at SPAC13G6.13.S1 --- 15.5067956447601 --- --- --- --- 1.55067956447601 0.158280029892921 0.15517383813858 1.7616720199585 0.466064006090164 0.870360970497131 0.725830018520355 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G6.13 /DEF=dubious --- --- --- --- --- --- SPAC13G6.13 // ||SPAC24B11.02|dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -15.5067956447601 -9.79706388433884 1.74702420648517 -9.99317657588102 1.13606451024186 Max fold change at or above threshold 0 15.5067956447601 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775063_at SPAC29B12.06c.S1 --- 15.5064830104124 --- --- --- --- 1.28620052337646 19.9444465637207 12.8279914855957 9.96456909179688 0.466064006090164 0.0561522990465164 0.0805663987994194 0.219482004642487 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29B12.06c /GEN=rcd1 /DEF=RNA-binding protein (PMID 9671458) --- --- --- --- --- --- SPAC29B12.06c // |rcd1||RNA binding protein Rcd1 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.02685090373617 15.5064830104124 7.8716633090602 9.97355486368513 7.74729049684914 Max fold change at or above threshold 3 15.5064830104124 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1775770_at SPAC26A3.10.S1 --- 15.5063504833668 --- --- --- --- 0.277900755405426 1.39074778556824 1.05000150203705 4.30922651290894 0.96044921875 0.696289002895355 0.665526986122131 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26A3.10 /DEF=ADP-ribosylation factor (ARF) (predicted) --- --- --- --- --- --- SPAC26A3.10 // |||ADP-ribosylation factor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.85554438582181 5.00447644893693 1.86562931845631 3.77833266593757 15.5063504833668 Max fold change at or above threshold 1 15.5063504833668 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1777943_at SPAC1002.21.S1 --- 15.5013398333811 --- --- --- --- 2.70910167694092 0.557697355747223 0.409395486116409 1.24480879306793 0.366210997104645 0.850341975688934 0.919434010982513 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1002.21 /DEF=dubious --- --- --- --- --- --- SPAC1002.21 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -15.5013398333811 -4.85765558868603 1.19774842389144 -6.61732180449738 -2.17631952154203 Max fold change at or above threshold 1 15.5013398333811 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776120_at YER175W-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 15.5003154277802 3.14312720298767 2.12277942895889 --- --- --- --- 1.55003154277802 3.50490546226501 2.78134894371033 2.69552731513977 0.665526986122131 0.149657994508743 0.334473013877869 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER175W-A /GEN=TMT1 /DB_XREF=GI:33438787 /SEG=NC_001137:+540645,540809 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Yer175w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028625 // YER175W-A SGDID:S0028625, Chr V from 540645-540809, Uncharacterized ORF // sgd // 11 // --- /// YER175W-A // cdna:known chromosome:SGD1:V:540645:540809:1 gene:YER175W-A // ensembl // 11 // --- --- No cerevisiae_gene 2.21565336858985 2.26118331500752 -15.5003154277802 1.79438215736275 1.73901449147852 Max fold change at or above threshold 3 15.5003154277802 Max fold change at or above threshold -1.34012489443169 1.07904818881871 0.18364085003892 0.0774358555740654 2.63295331597328 0.808075260518536 0.306908313040039 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776182_at SPAC1006.08.S1 --- 15.4977629945982 --- --- --- --- 6.95341873168945 8.95738792419434 2.12772130966187 0.675320863723755 0.212646484375 0.5 0.633789002895355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1006.08 /GEN=etd1 /DEF=involved in septation (required) --- --- --- --- --- --- SPAC1006.08 // |etd1||ethanol-hypersensitive mutant protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.09470744818005 1.28819912475169 -15.4977629945982 -3.26801198075818 -10.2964666208414 Max fold change at or above threshold 2 15.4977629945982 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771919_at SPBC887.10.S1 --- 15.4636165585485 --- --- --- --- 0.366797238588333 5.6720118522644 1.44959127902985 5.16734933853149 0.870360970497131 0.219482004642487 0.457763671875 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC887.10 /GEN=mcs4 /DEF=mitotic catastrophe suppressor --- --- --- --- --- --- SPBC887.10 // |mcs4||mitotic catastrophe suppressor|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.75318632531105 15.4636165585485 1.44035708456018 3.95202342473675 14.0877542001644 Max fold change at or above threshold 2 15.4636165585485 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774984_at SPBC2A9.04c.S1 --- 15.4457953682108 --- --- --- --- 0.572475135326386 2.56125140190125 0.939583361148834 0.919560134410858 0.828612983226776 0.725830018520355 0.725830018520355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2A9.04c /DEF=zinc finger protein --- --- --- --- --- --- SPBC2A9.04c // |||Sir Antagonist ortholog |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 15.4457953682108 4.47399588881882 3.56889383238488 1.64126492692674 1.60628833929458 Max fold change at or above threshold 1 15.4457953682108 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Sp-URA4-3_at AFFX-r2-Sp-URA4-3 --- 15.4426189366905 --- --- --- --- 7.22492361068726 8.98679447174072 1.44841861724854 1.21592092514038 0.334473013877869 0.334473013877869 0.665526986122131 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=URA4 orotidine 5-phosphate decarboxylase (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPCC330.05c // |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- AFFX_control No -1.9157370996599 1.24386013693588 -15.4426189366905 -4.98814605435821 -5.94193541808907 Max fold change at or above threshold 2 15.4426189366905 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769436_at SPBC1734.15.S1 --- 15.3999635512063 --- --- --- --- 10.6073036193848 13.8743200302124 7.6289005279541 7.08787250518799 0.398925989866257 0.366210997104645 0.432372987270355 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1734.15 /GEN=brd1 /DEF=bromodomain protein (PMID 7565614) --- --- --- --- --- --- SPBC1734.15 // |brd1||bromodomain protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -15.3999635512063 1.30799687913686 -6.30065879671846 -1.39041052908176 -1.49654266659293 Max fold change at or above threshold 4 15.3999635512063 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769489_at SPCC1020.04c.S1 --- 15.399936102128 --- --- --- --- 5.67857599258423 1.33226346969604 0.368740230798721 0.499299734830856 0.432372987270355 0.805419981479645 0.981445014476776 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1020.04c /GEN=rpb6 /DEF=DNA-directed RNA polymerase (I, II, and III subunit) --- --- --- --- --- --- SPCC1020.04c // |rpb6|rpo15|DNA-directed RNA polymerase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -8.23753462687708 -4.26235209607585 -11.8661418798823 -15.399936102128 -11.3730803292093 Max fold change at or above threshold 1 15.399936102128 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773266_at SPAC1006.09.S1 --- 15.3982169293061 --- --- --- --- 9.34971237182617 17.2962970733643 14.0416011810303 0.607194483280182 0.303710997104645 0.303710997104645 0.219482004642487 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1006.09 /GEN=win1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPAC1006.09 // |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.61238001470467 1.84992825292507 1.22136696027819 1.50182172698086 -15.3982169293061 Max fold change at or above threshold 3 15.3982169293061 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779648_at SPCC553.10.S1 --- 15.3897374719545 --- --- --- --- 0.557090640068054 1.32943689823151 1.44127869606018 6.808434009552 0.828612983226776 0.633789002895355 0.753906011581421 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC553.10 /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPCC553.10 // |||glycoprotein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 5.98582089632084 2.38639245144938 15.3897374719545 2.58715295572748 12.2214115977972 Max fold change at or above threshold 1 15.3897374719545 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779453_at SPAC9.06c.S1 --- 15.3862800379063 --- --- --- --- 0.363040208816528 1.76486301422119 2.76882910728455 3.70337390899658 0.828612983226776 0.633789002895355 0.601073980331421 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9.06c /DEF=similar to enterobacterial L-ribose-5-phosphate 4-epimerases --- --- --- --- --- --- SPAC9.06c // |||similar to enterobacterial L-ribose-5-phosphate 4-epimerases|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 15.3862800379063 4.86134310018842 2.45228462449292 7.62678359047508 10.2010020351993 Max fold change at or above threshold 2 15.3862800379063 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775228_at SPAP8A3.06.S1 --- 15.3834109563748 --- --- --- --- 4.95613431930542 7.02001714706421 9.65634536743164 0.580354750156403 0.24609400331974 0.129638999700546 0.0952147990465164 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP8A3.06 /DEF=U2AF small subunit (U2AF-23) (PMID 8657565 ) (PMID 12374752) --- --- --- --- --- --- SPAP8A3.06 // |||U2AF small subunit |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.07478568645997 1.41642996230337 -15.3834109563748 1.94836232137973 -8.53983588136354 Max fold change at or above threshold 3 15.3834109563748 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773512_at SPAC4H3.13.S1 --- 15.3811214912245 --- --- --- --- 0.257984101772308 1.97155106067657 3.96808481216431 0.11610609292984 0.888427972793579 0.466064006090164 0.24609400331974 0.850830078125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4H3.13 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC4H3.13 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.72108598037777 7.64214169451661 1.53994080755408 15.3811214912245 -2.22196867763177 Max fold change at or above threshold 1 15.3811214912245 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772458_at SPAC222.15.S1 --- 15.3662030439458 --- --- --- --- 0.299512803554535 4.21187686920166 4.60237455368042 0.241144374012947 0.99804699420929 0.303710997104645 0.149657994508743 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC222.15 /GEN=meu13 /DEF=meiosis specific transcript (PMID 11447128) --- --- --- --- --- --- SPAC222.15 // |meu13|SPAC821.01|meiotic expression upregulated |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.79576878844161 14.0624267784758 1.21261082855671 15.3662030439458 -1.24204765207773 Max fold change at or above threshold 2 15.3662030439458 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776192_at SPBC12D12.02c.S1 --- 15.3127911684043 --- --- --- --- 7.76023864746094 1.4784609079361 3.85382699966431 3.47936868667603 0.0952147990465164 0.870360970497131 0.5 0.390625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12D12.02c /GEN=cdm1 /DEF=DNA polymerase delta (subunit) (PMID 9326594) --- --- --- --- --- --- AJ006032 // Schizosaccharomyces pombe mRNA for cdm1+, partial. // gb // 11 // --- /// SPBC12D12.02c // |cdm1||DNA polymerase delta subunit Cdm1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -15.3127911684043 -5.24886292617238 -1.37335735341623 -2.01364478689285 -2.23035824779885 Max fold change at or above threshold 3 15.3127911684043 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769567_at SPBC1773.17c.S1 --- 15.2939448873787 --- --- --- --- 0.635720193386078 1.64439225196838 9.72266960144043 1.53228366374969 0.888427972793579 0.780517995357513 0.303710997104645 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1773.17c /DEF=glycerate and formate dehydrogenase (predicted) --- --- --- --- --- --- SPBC1773.17c // ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.78135869333367 2.58666040354916 12.9503508236515 15.2939448873787 2.41031145414493 Max fold change at or above threshold 1 15.2939448873787 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771146_at SPBC685.05.S1 --- 15.263583322759 --- --- --- --- 3.04354453086853 0.371317803859711 0.199399083852768 0.439577519893646 0.398925989866257 0.997070014476776 0.904784977436066 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC685.05 /DEF=phosphatidylinositol N-acetylglucosaminyltransferase subunit H (predicted) --- --- --- --- --- --- SPBC685.05 // |||pig-H |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.07126232717717 -8.19660274630523 -10.6507145067379 -15.263583322759 -6.92379476458419 Max fold change at or above threshold 1 15.263583322759 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773557_at SPBC13G1.03c.S1 --- 15.2534908542568 --- --- --- --- 3.77614092826843 0.276725590229034 2.30438876152039 0.36604118347168 0.274170011281967 0.99804699420929 0.696289002895355 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13G1.03c /DEF=localization peroxisomal membrane (predicted) --- --- --- --- --- --- SPBC13G1.03c // |pex14||peroxisomal membrane anchor protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -12.2368201138267 -13.6457959133562 -15.2534908542568 -1.63867355687719 -10.3161641333743 Max fold change at or above threshold 1 15.2534908542568 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775485_at SPCC297.03.S1 --- 15.2384561847485 --- --- --- --- 5.40089321136475 5.98848247528076 14.0915851593018 6.51509380340576 0.219482004642487 0.274170011281967 0.0561522990465164 0.107421875 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC297.03 /GEN=ssp1 /DEF=serinethreonine protein kinase (PMID 7628434) --- --- --- --- --- --- SPCC297.03 // |ssp1||serine/threonine protein kinase Ssp1 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.24208783446444 1.10879483095122 -15.2384561847485 2.6091212338081 1.20629931910086 Max fold change at or above threshold 4 15.2384561847485 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1776360_at SPCC364.02c.S1 --- 15.2292834561776 --- --- --- --- 3.78832149505615 6.14117240905762 1.44635021686554 0.248752444982529 0.533936023712158 0.466064006090164 0.850341975688934 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC364.02c /GEN=bis1 /DEF=involved in response to stress (PMID 11751918) --- --- --- --- --- --- SPCC364.02c // |bis1||stress response protein bis1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.06657742675613 1.62108005275476 -4.81366735668322 -2.61922835208337 -15.2292834561776 Max fold change at or above threshold 2 15.2292834561776 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776751_at SPAC6F6.12.S1 --- 15.2278376575399 --- --- --- --- 0.255849629640579 3.89603662490845 0.500237643718719 0.297301411628723 0.725830018520355 0.466064006090164 0.822998046875 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F6.12 /DEF=involved in proteasome function (predicted) --- --- --- --- --- --- SPAC6F6.12 // |||PX domain protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- D89155 // gb // 8 // Cross Hyb Matching Probes No No 2.71821126633088 15.2278376575399 -2.14313693648781 1.9552017504245 1.16201618914351 Max fold change at or above threshold 1 15.2278376575399 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779428_at SPAC1B3.18c.S1 --- 15.2243206973067 --- --- --- --- 4.78064012527466 11.2016696929932 0.837643563747406 1.63513338565826 0.303710997104645 0.171387001872063 0.5 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B3.18c /GEN=mrps18 /DEF=mitochondrial ribosomal protein subunit YmS18 --- --- --- --- --- --- SPAC1B3.18c // |mrps18||mitochondrial ribosomal protein subunit S18|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.05729409292991 2.34313175630421 -15.2243206973067 -5.70724868210923 -2.92370039484583 Max fold change at or above threshold 2 15.2243206973067 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772011_s_at SPBPB10D8.07c.S1 --- 15.1908268058534 --- --- --- --- 5.10843896865845 1.75156152248383 3.55080008506775 0.336284458637238 0.665526986122131 0.398925989866257 0.303710997104645 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB10D8.07c /DEF=malate permease (predicted) --- --- --- --- --- --- SPBPB10D8.07c // |||malate permease |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPBPB10D8.06c // |||malate permease |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPBPB10D8.05c // |||malate permease |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPBPB10D8.04c // |||malate permease |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.07933862082841 -2.91650558834745 -8.89298099418527 -1.43867265018413 -15.1908268058534 Max fold change at or above threshold 2 15.1908268058534 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777681_at SPAC10F6.08c.S1 --- 15.1883730778922 --- --- --- --- 2.39634895324707 2.03831076622009 3.36718559265137 1.44579446315765 0.633789002895355 0.466064006090164 0.0805663987994194 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC10F6.08c /DEF=transcriptional regulator --- --- --- --- --- --- SPAC10F6.08c // |||HMG box|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -15.1883730778922 -1.17565436682206 -12.087657929807 1.40513158072776 -1.65746170310639 Max fold change at or above threshold 1 15.1883730778922 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771647_at SPBP19A11.01.S1 --- 15.1855049502091 --- --- --- --- 0.305442839860916 1.55773687362671 0.911937773227692 4.63830375671387 0.904784977436066 0.688720703125 0.904784977436066 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP19A11.01 /DEF=glycine cleavage system h protein (predicted) --- --- --- --- --- --- SPBP19A11.01 // |||glycine decarboxylase complex subunit H|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.4126963699052 5.09992925136509 12.2554003278967 2.98562498188841 15.1855049502091 Max fold change at or above threshold 1 15.1855049502091 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773089_at YMR058W.S1 Ferro-O2-oxidoreductase required for high-affinity iron uptake and involved in mediating resistance to copper ion toxicity, belongs to class of integral membrane multicopper oxidases 15.1592188118994 56.2215385437012 895.598205566406 FET3 6827 // high affinity iron ion transport // inferred from mutant phenotype /// 46688 // response to copper ion // inferred from genetic interaction /// 46688 // response to copper ion // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay 4322 // ferroxidase activity // inferred from direct assay 842.552185058594 56.8628921508789 55.5801849365234 948.644226074219 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR058W /GEN=FET3 /DB_XREF=GI:6323703 /SEG=NC_001145:+388821,390731 /DEF=Ferro-O2-oxidoreductase required for high-affinity iron uptake and involved in mediating resistance to copper ion toxicity, belongs to class of integral membrane multicopper oxidases /NOTE=Fet3p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 9162052]; go_function: ferroxidase activity [goid GO:0004322] [evidence IDA] [pmid 9722559]; go_process: high affinity iron ion transport [goid GO:0006827] [evidence IMP] [pmid 8293473]; go_process: response to copper ion [goid GO:0046688] [evidence IGI,IMP] [pmid 12954629] --- --- --- --- --- S0004662 // span:560-582 // numtm:1 S0004662 // FET3 SGDID:S0004662, Chr XIII from 388821-390731, Verified ORF // sgd // 11 // --- /// GENSCAN00000018762 // cdna:Genscan chromosome:SGD1:XIII:388821:390731:1 // ensembl // 11 // --- /// GENEFINDER00000022098 // cdna:GeneFinder chromosome:SGD1:XIII:388821:390731:1 // ensembl // 11 // --- /// YMR058W // cdna:known chromosome:SGD1:XIII:388821:390731:1 gene:YMR058W // ensembl // 11 // --- --- No cerevisiae_gene -1.06385589968521 -14.8172587286447 1.02970739348938 -15.1592188118994 1.125917471816 Max fold change at or above threshold 4 15.1592188118994 Max fold change at or above threshold 0.753561064024802 -0.861268535718409 -0.863904887767805 0.971612359461412 475.909872055054 486.546254188463 1.02234957238328 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778727_at SPAC4G8.10.S1 --- 15.1317306461598 --- --- --- --- 8.20929336547852 2.11058330535889 3.76459431648254 0.54945033788681 0.0952147990465164 0.533936023712158 0.303710997104645 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G8.10 /GEN=gos1 /DEF=SNARE --- --- --- --- --- --- SPAC4G8.10 // |gos1||SNARE|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.99697768097029 -3.88958509462037 -15.1317306461598 -2.18065817332182 -14.9409196781123 Max fold change at or above threshold 2 15.1317306461598 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778292_at SPAC2F3.12c.S1 --- 15.1125697711549 --- --- --- --- 0.259740859270096 0.273433268070221 0.44046288728714 3.92535185813904 0.696289002895355 0.989257991313934 0.696289002895355 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F3.12c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC2F3.12c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 7.27714312628701 1.05271565220275 7.54369116846082 1.69577820187742 15.1125697711549 Max fold change at or above threshold 1 15.1125697711549 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771556_at SPAC1952.03.S1 --- 15.110506345561 --- --- --- --- 0.543603599071503 2.35388970375061 4.57733964920044 8.21412563323975 0.919434010982513 0.601073980331421 0.334473013877869 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1952.03 /DEF=OTU-like cysteine protease --- --- --- --- --- --- SPAC1952.03 // |||OTU-like cysteine protease|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.87355543847665 4.33015842384258 -2.74209391391775 8.42036303111077 15.110506345561 Max fold change at or above threshold 2 15.110506345561 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
RPTR-Sc-AF323980-1_at AFFX-Sc-AF323980-1 --- 15.1082782223204 --- --- --- --- 5.68937635421753 7.21760320663452 4.64226198196411 0.376573443412781 0.398925989866257 0.366210997104645 0.633789002895355 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL AF323980 /FEA=CDS /DB_XREF=AAK26531.1 GI:13446782 /PROD=minor outer capsid protein VP4 /NOTE=viral protein 4 --- --- --- --- --- --- AFFX-Sc-AF323980-1 // --- // affx // --- // --- --- No No -4.24595008018436 1.26861060989297 -10.9959134490771 -1.22556124068862 -15.1082782223204 Max fold change at or above threshold 3 15.1082782223204 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776631_at SPCC1281.02c.S1 --- 15.1060282720408 --- --- --- --- 1.04247260093689 15.7476205825806 6.39503335952759 0.406142920255661 0.665526986122131 0.171387001872063 0.366210997104645 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1281.02c /GEN=spf30 /DEF=spliceosome associated protein (implicated) --- --- --- --- --- --- SPCC1281.02c // |spf30||spliceosome associated protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.37349429278388 15.1060282720408 3.58789231750551 6.13448579250932 -2.56676295201864 Max fold change at or above threshold 2 15.1060282720408 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773518_at SPCC1919.05.S1 --- 15.1015545075822 --- --- --- --- 6.02836132049561 1.75189542770386 5.72736787796021 2.19243240356445 0.366210997104645 0.633789002895355 0.533936023712158 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1919.05 /DEF=TPR repeat protein --- --- --- --- --- --- SPCC1919.05 // |||TPR repeat protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.06358461546486 -3.44105088989058 -15.1015545075822 -1.05255353749733 -2.74962243337341 Max fold change at or above threshold 2 15.1015545075822 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774950_at SPBC146.14c.S1 --- 15.0995674681736 --- --- --- --- 7.44118785858154 2.22162818908691 2.59454226493835 2.92933487892151 0.00585938012227416 0.805419981479645 0.466064006090164 0.24609400331974 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC146.14c /GEN=sec26 /DEF=adaptin --- --- --- --- --- --- SPBC146.14c // |sec26|SPBC337.01c|coatomer beta subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.81244440663753 -3.34942988891398 -15.0995674681736 -2.86801566470467 -2.5402312013303 Max fold change at or above threshold 3 15.0995674681736 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1776558_at YMR011W.S1 High-affinity glucose transporter of the major facilitator superfamily, expression is induced by low levels of glucose and repressed by high levels of glucose 15.0993161568004 370.129791259766 3987.50964355469 HXT2 8645 // hexose transport // traceable author statement 5886 // plasma membrane // inferred from direct assay 5353 // fructose transporter activity // traceable author statement /// 5355 // glucose transporter activity // traceable author statement /// 5355 // glucose transporter activity // inferred from direct assay /// 15578 // mannose transporter activity // traceable author statement 4425.45068359375 293.089477539063 447.170104980469 3549.56860351563 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR011W /GEN=HXT2 /DB_XREF=GI:6323653 /SEG=NC_001145:+288078,289703 /DEF=High-affinity glucose transporter of the major facilitator superfamily, expression is induced by low levels of glucose and repressed by high levels of glucose /NOTE=Hxt2p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 10191260]; go_function: fructose transporter activity [goid GO:0005353] [evidence TAS] [pmid 10618490]; go_function: glucose transporter activity [goid GO:0005355] [evidence TAS] [pmid 10618490]; go_function: glucose transporter activity [goid GO:0005355] [evidence IDA] [pmid 12702270]; go_function: mannose transporter activity [goid GO:0015578] [evidence TAS] [pmid 10618490]; go_process: hexose transport [goid GO:0008645] [evidence TAS] [pmid 10618490] --- --- --- --- --- S0004613 // span:50-72,106-128,135-152,162-184,196-215,225-247,328-347,351-370,383-405,420-442,455-477,481-503 // numtm:12 S0004613 // HXT2 SGDID:S0004613, Chr XIII from 288078-289703, Verified ORF // sgd // 10 // --- /// GENSCAN00000018726 // cdna:Genscan chromosome:SGD1:XIII:288078:289703:1 // ensembl // 10 // --- /// GENEFINDER00000021829 // cdna:GeneFinder chromosome:SGD1:XIII:288078:289703:1 // ensembl // 10 // --- /// YMR011W // cdna:known chromosome:SGD1:XIII:288078:289703:1 gene:YMR011W // ensembl // 10 // --- M15167 // gb // 2 // Negative Strand Matching Probes /// M15168 // gb // 2 // Negative Strand Matching Probes No cerevisiae_gene 1.2026027319119 -15.0993161568004 -1.16116849129193 -9.89657097892768 -1.24675733248559 Max fold change at or above threshold 4 15.0993161568004 Max fold change at or above threshold 1.05982229486299 -0.889571531946781 -0.816885769742556 0.646635006826343 2178.81971740723 2119.81855550317 0.972920585658059 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769861_at SPCC24B10.08c.S1 --- 15.0681208516651 --- --- --- --- 2.91809821128845 0.380570441484451 0.354383081197739 0.193660393357277 0.39013671875 0.665526986122131 0.725830018520355 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC24B10.08c /DEF=histone acetyltransferase complex (predicted) --- --- --- --- --- --- SPCC24B10.08c // |||histone acetyltransferase complex component |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.18044979496862 -7.66769536779087 -14.2684211247258 -8.23430453120366 -15.0681208516651 Max fold change at or above threshold 1 15.0681208516651 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771471_at SPCC965.03.S1 --- 15.0598911725658 --- --- --- --- 0.631003677845001 8.68320369720459 0.807934641838074 0.616487860679626 0.725830018520355 0.171387001872063 0.753906011581421 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC965.03 /GEN=vma8 /DEF=vacuolar ATP synthase (subunit D) (predicted) --- --- --- --- --- --- SPCC965.03 // |vma8||vacuolar ATP synthase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.65628364844422 13.7609399153732 15.0598911725658 1.28039608992031 -1.0235459902639 Max fold change at or above threshold 1 15.0598911725658 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1769494_at SPBC26H8.02c.S1 --- 15.0578487994744 --- --- --- --- 0.254153400659561 2.76992225646973 2.02104258537292 0.797600269317627 0.997070014476776 0.633789002895355 0.753906011581421 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC26H8.02c /GEN=sec9 /DEF=SNARE (predicted) --- --- --- --- --- --- SPBC26H8.02c // |sec9||SNARE |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 2.90719799417751 10.8986236236911 15.0578487994744 7.95205800956452 3.13826321917295 Max fold change at or above threshold 1 15.0578487994744 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772445_at SPAC17A5.01.S1 --- 15.0310140207876 --- --- --- --- 0.556774735450745 8.36888885498047 2.66553854942322 4.54500532150269 0.633789002895355 0.0375977009534836 0.194580003619194 0.0375977009534836 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A5.01 /DEF=peroxin-6 (predicted) --- --- --- --- --- --- SPAC17A5.01 // |||peroxin-6 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 7.12135726619799 15.0310140207876 3.96861407559899 4.787463187002 8.16309547131878 Max fold change at or above threshold 3 15.0310140207876 Max fold change at or above threshold AAPAAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1770998_at YNR066C.S1 Hypothetical protein 15.0279958936849 122.9807472229 9.40236186981201 --- --- 5624 // membrane fraction // inferred from direct assay --- 8.87643337249756 112.56649017334 133.395004272461 9.92829036712646 0.14404296875 0.0107421996071935 0.00195312988944352 0.0676269978284836 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR066C /GEN=FRE4 /DB_XREF=GI:6324394 /SEG=NC_001146:-753722,755032 /DEF=Hypothetical ORF /NOTE=Ynr066cp; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 11935221]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005349 // YNR066C SGDID:S0005349, Chr XIV from 755033-753723, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020092 // cdna:Genscan chromosome:SGD1:XIV:753723:755033:-1 // ensembl // 11 // --- /// YNR066C // cdna:known chromosome:SGD1:XIV:753723:755033:-1 gene:YNR066C // ensembl // 11 // --- --- No cerevisiae_gene 5.63132445852133 12.6815000405582 2.08065632280665 15.0279958936849 1.11849995944181 Max fold change at or above threshold 4 15.0279958936849 Max fold change at or above threshold -0.86677032778822 0.701323094696548 1.01631044224613 -0.850863209154461 66.1915545463562 66.1249229886681 0.998993352578818 APPAPA No 3 0 APPA 2 2 0 No No 1 < x = 2
1779065_at SPBC3E7.12c.S1 --- 15.0095435548828 --- --- --- --- 0.99242240190506 3.43705272674561 14.8958072662354 4.18937158584595 0.567627012729645 0.398925989866257 0.0676269978284836 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3E7.12c /GEN=cfh4 /DEF=Chs Four Homologue (pers. comm. Henar Montero) --- --- --- --- --- --- SPBC3E7.12c // |chr1|cfh4|chitin synthase regulatory factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.51651760336359 3.4632961933828 6.51342356510492 15.0095435548828 4.22135935041773 Max fold change at or above threshold 3 15.0095435548828 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777438_at SPCPB1C11.01.S1 --- 14.9741877953605 --- --- --- --- 8.5788049697876 0.572906196117401 12.021800994873 6.40168046951294 0.432372987270355 0.828612983226776 0.334473013877869 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCPB1C11.01 /DEF=ammonium transporter (predicted) --- --- --- --- --- --- SPCPB1C11.01 // |||ammonium transporter |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.97571929963277 -14.9741877953605 -2.01055305061412 1.40133748665587 -1.34008640553725 Max fold change at or above threshold 3 14.9741877953605 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774402_at YNR075C-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /// Hypothetical protein /// Hypothetical protein /// Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 14.9507612690142 139.850635528564 21.6925668716431 --- --- --- --- 12.2752513885498 183.524353027344 96.1769180297852 31.1098823547363 0.274170011281967 0.129638999700546 0.0952147990465164 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR075C-A /GEN=COS10 /DB_XREF=GI:33438871 /SEG=NC_001146:-781508,781600 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ynr075c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028706 // YNR075C-A SGDID:S0028706, Chr XIV from 781601-781509, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YNR075C-A // cdna:known chromosome:SGD1:XIV:781509:781601:-1 gene:YNR075C-A // ensembl // 11 // --- --- No cerevisiae_gene 2.8691492404868 14.9507612690142 1.26562731372966 7.83502634573315 2.53435806485847 Max fold change at or above threshold 4 14.9507612690142 Max fold change at or above threshold -0.885428786356398 1.32824952855848 0.199139239119568 -0.641959981321649 80.7716012001038 77.3595244101124 0.957756479513904 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779670_at SPBC19C7.02.S1 --- 14.9462735568553 --- --- --- --- 5.37815713882446 0.857570588588715 3.06025886535645 3.68295836448669 0.24609400331974 0.919434010982513 0.334473013877869 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C7.02 /GEN=ubr1 /DEF=ubiquitin-protein ligase (E3) --- --- --- --- --- --- SPBC19C7.02 // |ubr1|SPBC32F12.14|ubiquitin-protein ligase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -14.9462735568553 -6.27138711423765 -2.24155495224618 -1.75741902088993 -1.46028181873678 Max fold change at or above threshold 3 14.9462735568553 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774266_at SPBC1271.06c.S1 --- 14.9394174813114 --- --- --- --- 2.92651891708374 0.876776337623596 0.420423030853271 0.195892438292503 0.65673828125 0.904784977436066 0.953857004642487 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1271.06c /DEF=hypothetical protein --- --- --- --- --- --- SPBC1271.06c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.70310814130444 -3.33781694544328 -2.70962418335461 -6.96089106047357 -14.9394174813114 Max fold change at or above threshold 1 14.9394174813114 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774429_at YPL279C.S1 Hypothetical protein /// Hypothetical protein 14.9322919820212 0.228150427341461 0.839096397161484 --- --- --- --- 0.105332791805267 0.17214024066925 0.284160614013672 1.5728600025177 0.957031011581421 0.943359017372131 0.862304985523224 0.803710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL279C /GEN=HSP32 /DB_XREF=GI:6324976 /SEG=NC_001148:-13228,14355 /DEF=Hypothetical ORF /NOTE=Ypl279cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005917 // span:12-29,44-66,79-101,126-148,214-236,241-258,271-290,310-332,339-361 // numtm:9 /// S0006200 // span:12-29,44-66,79-101,126-148,214-236,241-258,271-290,310-332,339-361 // numtm:9 S0006200 // YPL279C SGDID:S0006200, Chr XVI from 14355-13228, reverse complement, Uncharacterized ORF // sgd // 9 // --- /// YPL279C // cdna:known chromosome:SGD1:XVI:13228:14355:-1 gene:YPL279C // ensembl // 9 // --- --- No cerevisiae_gene -1.05332791805267 1.63425119299498 -1.05332791805267 2.69774121755939 14.9322919820212 Max fold change at or above threshold 0 14.9322919820212 Max fold change at or above threshold -0.614704950594551 -0.518819428958569 -0.358041969040054 1.49156634859317 0.533623412251472 0.696741778363679 1.30568067736004 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771457_at SPBC530.03c.S1 --- 14.9223613443167 --- --- --- --- 9.42954349517822 12.5948457717896 7.29527044296265 0.631906926631927 0.00805663969367743 0.149657994508743 0.219482004642487 0.665526986122131 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC530.03c /GEN=bag102 /DEF=ubiquitin family protein --- --- --- --- --- --- AF095790 // Schizosaccharomyces pombe BAG-family molecular chaperone regulator-1B protein mRNA, complete cds. // gb // 11 // --- /// SPBC530.03c // |bag102|bag1-b|ubiquitin family protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.41182099492687 1.33567926996995 -9.89519560247132 -1.29255571385628 -14.9223613443167 Max fold change at or above threshold 3 14.9223613443167 Max fold change at or above threshold PPAAAA No 4 0 PAAA 3 1 0 No No x = 1
1774232_at SPCC777.07.S1 --- 14.9113166676074 --- --- --- --- 2.82636737823486 0.630618155002594 3.89828586578369 0.333763271570206 0.633789002895355 0.780517995357513 0.601073980331421 0.781005859375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC777.07 /DEF=glycolipid 2-a-mannosyltransferase (predicted) --- --- --- --- --- --- SPCC777.07 // |||glycosyl transferase family 15|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -14.9113166676074 -4.48189979278861 -3.88967525978225 1.3792566018853 -8.46817975188845 Max fold change at or above threshold 2 14.9113166676074 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777431_at SPAC6F6.05.S1 --- 14.892558865274 --- --- --- --- 4.05364561080933 5.95626068115234 5.5731315612793 0.272192686796188 0.334473013877869 0.466064006090164 0.0461426004767418 0.24609400331974 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F6.05 /DEF=oligosaccharyltransferase (epsilon subunit) (predicted) --- --- --- --- --- --- SPAC6F6.05 // |||oligosaccharyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.60421966637197 1.46935900495829 1.31109827880144 1.3748442997627 -14.892558865274 Max fold change at or above threshold 3 14.892558865274 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1773883_at SPAC1F12.10c.S1 --- 14.8842014001343 --- --- --- --- 3.58504867553711 0.766077101230621 1.09648406505585 0.240862682461739 0.696289002895355 0.995850026607513 0.962401986122131 0.989257991313934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F12.10c /DEF=heme binding protein (predicted) --- --- --- --- --- --- SPAC1F12.10c // |||heme binding protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -10.6290339126506 -4.67974916594963 -2.75491738381138 -3.26958575121154 -14.8842014001343 Max fold change at or above threshold 1 14.8842014001343 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778026_at SPAC1B1.04c.S1 --- 14.8784146917375 --- --- --- --- 0.396630316972733 5.9012303352356 3.99045586585999 1.56704902648926 0.888427972793579 0.303710997104645 0.274170011281967 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B1.04c /DEF=poly A specific ribonuclease subunit (predicted) --- --- --- --- --- --- SPAC1B1.04c // |||poly|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.6081028169157 14.8784146917375 13.6338626485447 10.0608947301785 3.95090581690705 Max fold change at or above threshold 2 14.8784146917375 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778394_at SPBC14C8.11c.S1 --- 14.8303134251747 --- --- --- --- 6.65767574310303 5.39980888366699 4.17902708053589 3.90989518165588 0.129638999700546 0.219482004642487 0.24609400331974 0.00585938012227416 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14C8.11c /DEF=sequence orphan --- --- --- --- --- --- SPBC14C8.11c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -14.8303134251747 -1.23294655172718 -6.85333623916999 -1.59311620020641 -1.70277601669194 Max fold change at or above threshold 4 14.8303134251747 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1776511_at SPAC4H3.03c.S1 --- 14.816449791059 --- --- --- --- 8.16575813293457 0.903185546398163 1.47330176830292 1.65063500404358 0.129638999700546 0.919434010982513 0.828612983226776 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4H3.03c /DEF=conserved protein (mainly bacterial) --- --- --- --- --- --- SPAC4H3.03c // |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -14.816449791059 -9.04106378307205 -11.4926067855852 -5.54248851702705 -4.94704044984556 Max fold change at or above threshold 1 14.816449791059 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778136_at SPCC4B3.15.S1 --- 14.815608609766 --- --- --- --- 0.587935149669647 8.71061706542969 1.2956303358078 1.25881111621857 0.633789002895355 0.303710997104645 0.665526986122131 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4B3.15 /GEN=dmf1 /DEF=involved in cytokinesis (required) --- --- --- --- --- --- Y07599 // S.pombe mRNA for dmf1 gene. // gb // 11 // --- /// SPCC4B3.15 // |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.55592115301075 14.815608609766 3.056639478341 2.20369599697483 2.14107136973504 Max fold change at or above threshold 1 14.815608609766 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773388_at SPBC23G7.04c.S1 --- 14.808700865706 --- --- --- --- 7.97933053970337 0.538827180862427 0.956596851348877 3.89529323577881 0.129638999700546 0.725830018520355 0.725830018520355 0.064208984375 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23G7.04c /GEN=nif1 /DEF=SEL1 repeat protein --- --- --- --- --- --- SPBC23G7.04c // |nif1||SEL1 repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.23117420361631 -14.808700865706 1.4130843261651 -8.34137236438933 -2.04845439270454 Max fold change at or above threshold 2 14.808700865706 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1770473_at SPBC2G2.10c.S1 --- 14.798780205429 --- --- --- --- 0.458847373723984 2.11272239685059 1.14186704158783 6.79038143157959 0.870360970497131 0.870360970497131 0.932372987270355 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G2.10c /DEF=hypothetical protein --- --- --- --- --- --- SPBC2G2.10c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.1825850256743 4.60441209394712 8.43683355608074 2.48855525165261 14.798780205429 Max fold change at or above threshold 1 14.798780205429 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770097_at SPCC1020.05.S1 --- 14.7941264839978 --- --- --- --- 10.4305229187012 1.66282904148102 3.72237110137939 0.942027866840363 0.24609400331974 0.780517995357513 0.5 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1020.05 /DEF=calcineurin-like phosphoesterase --- --- --- --- --- --- SPCC1020.05 // |||calcineurin-like phosphoesterase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.53887221460771 -6.27275724593498 -14.7941264839978 -2.80211796046771 -11.0724144007395 Max fold change at or above threshold 2 14.7941264839978 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773080_at SPAC823.08c.S1 --- 14.787162645741 --- --- --- --- 1.23257350921631 18.2262649536133 12.6908149719238 5.34310865402222 0.533936023712158 0.194580003619194 0.0952147990465164 0.21337890625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC823.08c /DEF=RNA helicase (predicted) --- --- --- --- --- --- SPAC823.08c // |||ATP-dependent RNA helicase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.44668601497779 14.787162645741 6.68326128653631 10.2961931901269 4.33492089037307 Max fold change at or above threshold 3 14.787162645741 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770531_at SPCC16A11.05c.S1 --- 14.7823000533437 --- --- --- --- 2.18275952339172 0.407842963933945 0.147660344839096 0.262343138456345 0.533936023712158 0.805419981479645 0.943848013877869 0.718505859375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16A11.05c /GEN=dim1 /DEF=U4U6 x U5 tri-snRNP complex --- --- --- --- --- --- SPCC16A11.05c // |dim1||U4/U6 x U5 tri-snRNP complex|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.15803885593289 -5.35196072119868 -9.8693879514546 -14.7823000533437 -8.32024628597232 Max fold change at or above threshold 0 14.7823000533437 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771882_at SPBC1683.10c.S1 --- 14.7556479656499 --- --- --- --- 0.422891616821289 1.79549252986908 6.24003982543945 2.10803174972534 0.870360970497131 0.753906011581421 0.219482004642487 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1683.10c /DEF=DUF125 --- --- --- --- --- --- SPBC1683.10c // |||DUF125|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 11.4123229161499 4.24575105878214 4.12830488866438 14.7556479656499 4.98480382649955 Max fold change at or above threshold 1 14.7556479656499 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774242_at SPAC3F10.18c.S1 --- 14.7346098016039 --- --- --- --- 5.37538862228394 6.97439336776733 3.96129083633423 2.29748797416687 0.466064006090164 0.366210997104645 0.567627012729645 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3F10.18c /GEN=rpl4102 /DEF=60S ribosomal protein L41 --- --- --- --- --- --- SPAC3F10.18c // |rpl4102|rpl41-2, rpl41, SPAC8F11.01c|60S ribosomal protein L41|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -14.7346098016039 1.29746774751404 -11.2548227236107 -1.35697903647446 -2.33968085262043 Max fold change at or above threshold 3 14.7346098016039 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779305_at SPCC24B10.20.S1 --- 14.7131702451546 --- --- --- --- 4.96940946578979 0.459037572145462 6.54045009613037 0.337752461433411 0.398925989866257 0.98046875 0.665526986122131 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC24B10.20 /DEF=short chain dehydrogenase (predicted) --- --- --- --- --- --- SPCC24B10.20 // |||short chain dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.63703549997125 -10.8257139879937 -2.54634858424875 1.3161423185503 -14.7131702451546 Max fold change at or above threshold 2 14.7131702451546 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778039_s_at SPBPB8B6.05c.S1 --- 14.6987077513893 --- --- --- --- 0.272172927856445 4.00059032440186 3.96270203590393 1.80598473548889 0.633789002895355 0.424072265625 0.111571997404099 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB8B6.05c /DEF=L-asparaginase (predicted) --- --- --- --- --- --- SPBPB8B6.05c // ||SPAPB8B6.05c|L-asparaginase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPAC977.12 // |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 13.7862218546991 14.6987077513893 2.43097546724879 14.5595010757059 6.63543119336777 Max fold change at or above threshold 2 14.6987077513893 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771899_at SPAC1002.14.S1 --- 14.6914901936215 --- --- --- --- 7.65936851501465 0.581248581409454 5.42703437805176 5.57790994644165 0.0676269978284836 0.633789002895355 0.466064006090164 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1002.14 /GEN=itt1 /DEF=zinc finger protein --- --- --- --- --- --- SPAC1002.14 // |itt1||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -9.35570011466846 -13.1774403585496 -14.6914901936215 -1.41133591229696 -1.37316102062581 Max fold change at or above threshold 3 14.6914901936215 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770520_at SPAC17G6.10.S1 --- 14.687894866949 --- --- --- --- 5.48930788040161 0.373730063438416 0.597214877605438 0.47271516919136 0.753906011581421 0.932372987270355 0.962401986122131 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G6.10 /DEF=Myb family --- --- --- --- --- --- SPAC17G6.10 // |||Myb family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.78281311743841 -14.687894866949 -2.27984902817532 -9.1915122784805 -11.612294756252 Max fold change at or above threshold 1 14.687894866949 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773111_at SPAC5H10.11.S1 --- 14.6642930284714 --- --- --- --- 6.68741846084595 3.92213177680969 11.8116455078125 3.62444114685059 0.0461426004767418 0.665526986122131 0.0561522990465164 0.274170011281967 P A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5H10.11 /GEN=gmh1 /DEF=galactosyltransferase --- --- --- --- --- --- SPAC5H10.11 // |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -14.6642930284714 -1.7050468575244 1.09183343217204 1.76624890112206 -1.845089543434 Max fold change at or above threshold 4 14.6642930284714 Max fold change at or above threshold PAAAMA No 4 0 PAMA 2 1 1 No No x = 1
1769444_at SPBC660.17c.S1 --- 14.6633668558683 --- --- --- --- 0.545552253723145 3.09309363365173 7.99963283538818 3.31487965583801 0.919434010982513 0.633789002895355 0.633789002895355 0.59228515625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC660.17c /DEF=sequence orphan --- --- --- --- --- --- SPBC660.17c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.61924605325031 5.66965604585589 2.05972392418185 14.6633668558683 6.07619092986139 Max fold change at or above threshold 3 14.6633668558683 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779711_at SPAC3F10.13.S1 --- 14.660704909765 --- --- --- --- 17.5483818054199 2.47295093536377 10.7770547866821 1.19696712493896 0.303710997104645 0.8447265625 0.5 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3F10.13 /GEN=ucp6 /DEF=UBA domain --- --- --- --- --- --- SPAC3F10.13 // |ucp6||UBA domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.16271680719984 -7.0961301959024 -8.76040585550158 -1.62830960339049 -14.660704909765 Max fold change at or above threshold 2 14.660704909765 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769965_at SPAC17C9.15c.S1 --- 14.6597138617186 --- --- --- --- 0.895966470241547 13.1346120834351 0.641607105731964 0.275891333818436 0.870360970497131 0.533936023712158 0.932372987270355 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17C9.15c /DEF=dubious --- --- --- --- --- --- SPAC17C9.15c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.79337186441184 14.6597138617186 4.28614041024831 -1.39644100297082 -3.2475339396894 Max fold change at or above threshold 1 14.6597138617186 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770538_at YPR200C.S1 Arsenate reductase required for arsenate resistance; converts arsenate to arsenite which can then be exported from cells by Arr3p 14.6333341785103 7.70290303230286 2.07878309488297 ARR2 46685 // response to arsenic // traceable author statement --- 30611 // arsenate reductase activity // inferred from direct assay /// 30611 // arsenate reductase activity // inferred from mutant phenotype 0.615903258323669 6.39308786392212 9.01271820068359 3.54166293144226 0.567627012729645 0.0676269978284836 0.00292969006113708 0.043701171875 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR200C /GEN=ARR2 /DB_XREF=GI:6325458 /SEG=NC_001148:-939273,939665 /DEF=Arsenate reductase required for arsenate resistance; converts arsenate to arsenite which can then be exported from cells by Arr3p /NOTE=Arr2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: arsenate reductase activity [goid GO:0030611] [evidence IDA,IMP] [pmid 10801893]; go_process: response to arsenate [goid GO:0046685] [evidence TAS] [pmid 10801893] --- --- --- --- --- --- S0006404 // ARR2 SGDID:S0006404, Chr XVI from 939667-939275, reverse complement, Verified ORF // sgd // 11 // --- /// YPR200C // cdna:known chromosome:SGD1:XVI:939275:939667:-1 gene:YPR200C // ensembl // 11 // --- --- No cerevisiae_gene -1.73157590764676 10.3800195526201 9.65765340300172 14.6333341785103 5.75035589368655 Max fold change at or above threshold 3 14.6333341785103 Max fold change at or above threshold -1.18049040470373 0.414832875569111 1.13822282192718 -0.37256529279257 4.89084306359291 3.62132533075705 0.740429673099498 AAAMPP No 3 0 AAPP 2 2 0 No No 1 < x = 2
1777940_at SPACUNK4.19.S1 --- 14.6296185542115 --- --- --- --- 0.544748246669769 7.96945905685425 4.14036417007446 0.722015857696533 0.71875 0.24609400331974 0.21337890625 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPACUNK4.19 /DEF=hypothetical protein --- --- --- --- --- --- SPACUNK4.19 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.55599654198943 14.6296185542115 10.1835141829969 7.60050940115166 1.32541199005313 Max fold change at or above threshold 2 14.6296185542115 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775606_at SPAC688.03c.S1 --- 14.6219848601013 --- --- --- --- 0.442282021045685 2.94223141670227 6.467041015625 0.634017467498779 0.900634765625 0.533936023712158 0.0461426004767418 0.828612983226776 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC688.03c /DEF=conserved protein (broad species distribution) --- --- --- --- --- --- SPAC688.03c // |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.00639964012048 6.65238756426492 1.3753692760942 14.6219848601013 1.43351399634056 Max fold change at or above threshold 2 14.6219848601013 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1777064_at SPBC83.01.S1 --- 14.6219317880531 --- --- --- --- 3.37263321876526 0.661148190498352 2.00119590759277 0.427025079727173 0.5 0.828612983226776 0.753906011581421 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC83.01 /GEN=ucp8 /DEF=actin cortical patch component (predicted) --- --- --- --- --- --- SPBC83.01 // |ucp8||actin cortical patch component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- AB005904 // gb // 1 // Negative Strand Matching Probes /// SPBC83.02c // sanger // 1 // Negative Strand Matching Probes No No -3.90106559298429 -5.10117590463808 -14.6219317880531 -1.68530887254421 -7.89797456608413 Max fold change at or above threshold 1 14.6219317880531 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780015_at SPAC323.02c.S1 --- 14.6179883736397 --- --- --- --- 5.81360769271851 4.12133264541626 4.24631643295288 2.43231868743896 0.24609400331974 0.24609400331974 0.030273400247097 0.466064006090164 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC323.02c /DEF=20S proteasome component (alpha 5) --- --- --- --- --- --- SPAC323.02c // |||20S proteasome component |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -14.6179883736397 -1.41061355461913 -1.54657924211519 -1.36909431610016 -2.39015048592985 Max fold change at or above threshold 3 14.6179883736397 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1772370_at SPAC6F6.11c.S1 --- 14.6160591248358 --- --- --- --- 0.203758224844933 1.4858306646347 1.61327648162842 0.37946891784668 0.953857004642487 0.753906011581421 0.753906011581421 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F6.11c /DEF=pyridoxal kinase (predicted) --- --- --- --- --- --- SPAC6F6.11c // |||pyridoxal kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 14.6160591248358 7.29212607621349 2.68986059146044 7.91760176972576 1.86234895860263 Max fold change at or above threshold 0 14.6160591248358 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775755_s_at SPCC970.11c.S1 --- 14.612506885721 --- --- --- --- 3.55040979385376 4.08053159713745 0.907256841659546 0.242970615625381 0.334473013877869 0.4912109375 0.696289002895355 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC970.11c /GEN=wtf9 /DEF=wtf element --- --- --- --- --- --- SPCC970.11c // |wtf9||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPCC306.10 // |wtf8||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.11249859825205 1.14931284951991 -1.13069873873335 -3.91334584742219 -14.612506885721 Max fold change at or above threshold 2 14.612506885721 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770351_at SPBC25H2.12c.S1 --- 14.6034080178141 --- --- --- --- 6.65227460861206 2.77894878387451 1.40324664115906 6.66152048110962 0.149657994508743 0.696289002895355 0.753906011581421 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25H2.12c /GEN=cct7 /DEF=chaperonin-containing T-complex --- --- --- --- --- --- SPBC25H2.12c // |cct7||chaperonin-containing T-complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -14.6034080178141 -2.39380971942103 -8.89580878529945 -4.74063105764315 1.00138988136262 Max fold change at or above threshold 3 14.6034080178141 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775879_at SPCC330.07c.S1 --- 14.6023217475778 --- --- --- --- 5.69327116012573 10.3082389831543 8.32982444763184 0.389888077974319 0.366210997104645 0.24609400331974 0.111571997404099 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC330.07c /DEF=transporter --- --- --- --- --- --- SPCC330.07c // |||membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.81448977169311 1.81060039004477 -1.20923597372337 1.46309989694007 -14.6023217475778 Max fold change at or above threshold 3 14.6023217475778 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1772277_at SPAC30.04c.S1 --- 14.598400785021 --- --- --- --- 10.4989490509033 3.14680004119873 1.44274401664734 3.80958008766174 0.111571997404099 0.334473013877869 0.696289002895355 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30.04c /DEF=transporter activity --- --- --- --- --- --- SPAC30.04c // |||ABC transporter family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.90578930350721 -3.33638900262118 -14.598400785021 -7.27706989580929 -2.75593341242693 Max fold change at or above threshold 3 14.598400785021 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773642_at SPAC212.08c.S1 --- 14.5969134019792 --- --- --- --- 0.694095432758331 10.1316509246826 2.10984468460083 4.05289363861084 0.888427972793579 0.334473013877869 0.74609375 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC212.08c /DEF=66294 domain --- --- --- --- --- --- SPAC212.08c // |||66294 domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.95113202769019 14.5969134019792 7.54369591933492 3.03970403063498 5.83910143667804 Max fold change at or above threshold 2 14.5969134019792 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780042_at SPBC16A3.14.S1 --- 14.5930970973381 --- --- --- --- 0.366345345973969 4.05191850662231 0.528167247772217 5.34611320495605 0.888427972793579 0.398925989866257 0.828612983226776 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16A3.14 /DEF=superoxide dismutase (predicted) --- --- --- --- --- --- SPBC16A3.14 // |||mitochondrial ribosomal subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.26042561080222 11.0603793692257 3.02898268945887 1.44171955117385 14.5930970973381 Max fold change at or above threshold 2 14.5930970973381 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776329_at SPCC1322.12c.S1 --- 14.5801405828736 --- --- --- --- 0.425343245267868 6.2015643119812 0.292589485645294 0.575943648815155 0.932372987270355 0.533936023712158 0.974365234375 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1322.12c /GEN=bub1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPCC1322.12c // |bub1||serine/threonine protein kinase Bub1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.32557152737524 14.5801405828736 1.8510741653448 -1.45372019889844 1.35406793271736 Max fold change at or above threshold 1 14.5801405828736 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777203_at SPBC1105.10.S1 --- 14.5759590647691 --- --- --- --- 9.30750274658203 1.33700811862946 7.61317014694214 0.638551652431488 0.334473013877869 0.567627012729645 0.24609400331974 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1105.10 /DEF=involved in regulation of (H+)-ATPase in vacuolar membrane (predicted) --- --- --- --- --- --- SPBC1105.10 // |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.07146731439304 -6.96144070996592 1.08732160173384 -1.22255283501321 -14.5759590647691 Max fold change at or above threshold 2 14.5759590647691 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777415_at SPCC830.11c.S1 --- 14.5737756257999 --- --- --- --- 2.69608163833618 0.901021778583527 1.85885107517242 0.184995412826538 0.5 0.696289002895355 0.601073980331421 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC830.11c /DEF=conserved protein (broad species distribution) --- --- --- --- --- --- SPCC830.11c // |||AAA family ATPase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -7.19131815876539 -2.99224913583623 -1.34562198711113 -1.45040217279703 -14.5737756257999 Max fold change at or above threshold 1 14.5737756257999 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776327_at SPBC887.11.S1 --- 14.5481787288232 --- --- --- --- 3.88201189041138 0.26683834195137 0.562628567218781 1.14342939853668 0.5 0.985840022563934 0.904784977436066 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC887.11 /DEF=tRNA pseudouridylate synthase (predicted) --- --- --- --- --- --- SPBC887.11 // |||tRNA pseudouridylate synthase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.84405665922581 -14.5481787288232 -1.22032914326383 -6.89977743149654 -3.39506041682978 Max fold change at or above threshold 1 14.5481787288232 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775602_at SPBC3E7.10.S1 --- 14.545038641032 --- --- --- --- 12.0582513809204 3.5615861415863 10.0458784103394 2.00991582870483 0.171387001872063 0.665526986122131 0.432372987270355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3E7.10 /DEF=methionine aminopeptidase (predicted) --- --- --- --- --- --- SPBC3E7.10 // |||methionine aminopeptidase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -14.545038641032 -3.38564080765143 -1.83103812635053 -1.20031826868518 -5.9993812719464 Max fold change at or above threshold 3 14.545038641032 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769596_at SPCC191.07.S1 --- 14.5389876056281 --- --- --- --- 7.15860176086426 17.0470027923584 4.69604969024658 0.492372781038284 0.334473013877869 0.219482004642487 0.5 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC191.07 /GEN=cyc1 /DEF=cytochrome c (putative) --- --- --- --- --- --- SPCC191.07 // |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.9987655395958 2.38133134958751 -4.89293990049156 -1.52438799268505 -14.5389876056281 Max fold change at or above threshold 3 14.5389876056281 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774821_at SPBC11B10.07c.S1 --- 14.5387135252092 --- --- --- --- 4.81085443496704 9.00271034240723 9.89146900177002 2.26867818832397 0.144775390625 0.0375977009534836 0.0461426004767418 0.303710997104645 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11B10.07c /DEF=CDC50 domain protein --- --- --- --- --- --- SPBC11B10.07c // |||CDC50 domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -14.5387135252092 1.87133293349561 1.27045543142481 2.05607322680047 -2.12055392418664 Max fold change at or above threshold 3 14.5387135252092 Max fold change at or above threshold AAPPPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1776955_at SPAC56F8.13.S1 --- 14.5191046709421 --- --- --- --- 0.302276879549026 0.339441329240799 4.38878965377808 0.212267637252808 0.601073980331421 0.432372987270355 0.303710997104645 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC56F8.13 /DEF=dubious --- --- --- --- --- --- SPAC56F8.13 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.16507790424649 1.12294837020687 2.81941832420052 14.5191046709421 -1.42403657694187 Max fold change at or above threshold 1 14.5191046709421 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775547_at SPAC29A4.02c.S1 --- 14.4979428673592 --- --- --- --- 10.2275037765503 3.52091240882874 4.96770715713501 0.977796792984009 0.366210997104645 0.753906011581421 0.274170011281967 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29A4.02c /DEF=translation elongation factor 1 (gamma subunit) (PMID 9099890) --- --- --- --- --- --- SPAC29A4.02c // |||translation elongation factor 1 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.79653273001715 -2.90478790409687 -14.4979428673592 -2.05879764105272 -10.4597436296946 Max fold change at or above threshold 3 14.4979428673592 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779405_at SPCC4B3.01.S1 --- 14.4920710683424 --- --- --- --- 0.372321754693985 5.39571332931519 3.52646780014038 2.96832394599915 0.665526986122131 0.24609400331974 0.366210997104645 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4B3.01 /DEF=rhodanase-like domain --- --- --- --- --- --- SPCC4B3.01 // ||SPCP25A2.01c|rhodanase-like domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.96633358800837 14.4920710683424 8.29888053713086 9.47155989592609 7.97246980219794 Max fold change at or above threshold 3 14.4920710683424 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771720_at SPCC338.02.S1 --- 14.4912542640725 --- --- --- --- 1.022305727005 14.814492225647 14.2142972946167 5.01709794998169 0.780517995357513 0.0107421996071935 0.030273400247097 0.129638999700546 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC338.02 /DEF=sequence orphan --- --- --- --- --- --- SPCC338.02 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 8.29360933108606 14.4912542640725 4.65358648519623 13.9041550087561 4.90762970161579 Max fold change at or above threshold 3 14.4912542640725 Max fold change at or above threshold AMPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1773736_at SPBC691.01.S1 --- 14.4906525926942 --- --- --- --- 19.6532402038574 4.91035985946655 2.37006282806396 1.35627019405365 0.00805663969367743 0.334473013877869 0.219482004642487 0.398925989866257 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC691.01 /DEF=zinc finger protein --- --- --- --- --- --- SPBC691.01 // |||palmitoyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.31033468005152 -4.00240323852609 -2.78255414613465 -8.29228658883764 -14.4906525926942 Max fold change at or above threshold 2 14.4906525926942 Max fold change at or above threshold PAAPAA No 4 0 PAAA 3 1 0 No No x = 1
1774076_at SPCC24B10.18.S1 --- 14.4881392882028 --- --- --- --- 7.48827934265137 3.41243243217468 0.765009224414825 5.91266441345215 0.334473013877869 0.398925989866257 0.753906011581421 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC24B10.18 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC24B10.18 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.50758927757143 -2.19441102248557 -14.4881392882028 -9.78848241781573 -1.26648137269798 Max fold change at or above threshold 3 14.4881392882028 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773715_at SPBC11B10.04c.S1 --- 14.4814112717733 --- --- --- --- 0.285310626029968 0.157777979969978 4.13170051574707 0.2568399310112 0.870360970497131 0.953857004642487 0.533936023712158 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11B10.04c /GEN=mrps28 /DEF=mitochondrial ribosomal protein small subunit mrps28 --- --- --- --- --- --- SPBC11B10.04c // |mrps28||mitochondrial ribosomal protein small subunit S28|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.05080734396694 -1.80830446735506 1.05904849627657 14.4814112717733 -1.11084995587204 Max fold change at or above threshold 1 14.4814112717733 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771374_at SPBC582.05c.S1 --- 14.4764783108214 --- --- --- --- 0.475533366203308 6.88404846191406 2.9759533405304 0.249119699001312 0.725830018520355 0.466064006090164 0.219482004642487 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC582.05c /GEN=brc1 /DEF=BRCT domain --- --- --- --- --- --- SPBC582.05c // |brc1||BRCT domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.10335147744838 14.4764783108214 3.13466194943524 6.25813781331606 -1.90885493242669 Max fold change at or above threshold 2 14.4764783108214 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772053_at SPMIT.05.S1 --- 14.4692767124923 --- --- --- --- 2.50032687187195 0.313818901777267 10.8397102355957 1.42199146747589 0.366210997104645 0.919434010982513 0.194580003619194 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPMIT.05 /GEN=cob /DEF=cytochrome b --- --- --- --- --- --- SPMIT.05 // |cob||cytochrome b|Schizosaccharomyces pombe|chr mitochondrial|||Manual // sanger // 11 // --- --- No No -1.52751161605127 -7.96741960956371 -14.4692767124923 4.33531725693138 -1.75832761944075 Max fold change at or above threshold 2 14.4692767124923 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776661_at SPAC14C4.01c.S1 --- 14.4691933308646 --- --- --- --- 7.63413858413696 1.34773826599121 3.81726598739624 1.982337474823 0.334473013877869 0.466064006090164 0.334473013877869 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC14C4.01c /DEF=sequence orphan --- --- --- --- --- --- SPAC14C4.01c // ||SPAC19D5.08c|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.63174613496102 -5.66440738292931 -14.4691933308646 -1.99989694439507 -3.85107918358786 Max fold change at or above threshold 2 14.4691933308646 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775264_s_at SPAC212.06c.S1 --- 14.4639065360499 --- --- --- --- 3.57037091255188 1.12059605121613 1.13669550418854 2.67397379875183 0.5 0.850341975688934 0.780517995357513 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC212.06c /DEF=pseudo-truncated C terminal of DNA helicase in rearranged telomeric region --- --- --- --- --- --- SPBCPT2R1.08c // |||RecQ type DNA helicase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPAC212.11 // |||RecQ type DNA helicase|Schizosaccharomyces pombe|chr 1||Partial|Manual // sanger // 11 // --- /// SPAC212.06c // |||pseudo-truncated C terminal of DNA helicase in rearranged telomeric region|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.24152338297452 -3.18613554695034 -14.4639065360499 -3.14100909117318 -1.33523032806771 Max fold change at or above threshold 2 14.4639065360499 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769987_at SPAC1783.07c.S1 --- 14.4637548164525 --- --- --- --- 0.399263173341751 3.19928336143494 2.39888882637024 0.972091197967529 0.997070014476776 0.870360970497131 0.805419981479645 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1783.07c /GEN=pap1 /DEF=transcription factor --- --- --- --- --- --- SPAC1783.07c // |pap1|caf3|AP-1-like transcription factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.79379690258653 8.01296882619448 14.4637548164525 6.0082897360456 2.43471289834052 Max fold change at or above threshold 1 14.4637548164525 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778964_at SPAC3A12.15.S1 --- 14.4612834462902 --- --- --- --- 0.292521744966507 0.340810596942902 1.12390768527985 4.23023986816406 0.953857004642487 0.976073980331421 0.828612983226776 0.18896484375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A12.15 /GEN=vps53 /DEF=involved in intracellular protein transport (predicted) --- --- --- --- --- --- SPAC3A12.15 // |vps53||GARP complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.09498711615939 1.16507782005035 8.70414402834892 3.84213380584247 14.4612834462902 Max fold change at or above threshold 1 14.4612834462902 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778530_at SPAC22E12.18.S1 --- 14.45702409351 --- --- --- --- 6.82921266555786 9.61908912658691 3.08466291427612 0.472380250692368 0.398925989866257 0.194580003619194 0.266845703125 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22E12.18 /DEF=conserved fungal protein --- --- --- --- --- --- SPAC22E12.18 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.71221510549834 1.40852095221743 -8.06831981467857 -2.213925104734 -14.45702409351 Max fold change at or above threshold 3 14.45702409351 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776177_at SPBC3B9.01.S1 --- 14.4272570362333 --- --- --- --- 0.274797230958939 0.51841938495636 2.11245703697205 3.96457028388977 0.633789002895355 0.805419981479645 0.334473013877869 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B9.01 /DEF=hypothetical protein --- --- --- --- --- --- SPBC3B9.01 // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 10.600689646571 1.88655243412487 7.17296333832755 7.68733014375861 14.4272570362333 Max fold change at or above threshold 1 14.4272570362333 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778321_at SPBPB8B6.05c.S1 --- 14.4175051161235 --- --- --- --- 0.392820775508881 5.6634955406189 0.718407273292542 0.585281670093536 0.989257991313934 0.601073980331421 0.850341975688934 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB8B6.05c /DEF=L-asparaginase (predicted) --- --- --- --- --- --- SPBPB8B6.05c // ||SPAPB8B6.05c|L-asparaginase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.13176026665295 14.4175051161235 -1.38281893727267 1.82884235784596 1.48994581392833 Max fold change at or above threshold 1 14.4175051161235 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777586_at SPAPJ696.02.S1 --- 14.4049950856332 --- --- --- --- 0.463951259851456 5.36845922470093 6.68321561813354 2.10987997055054 0.601073980331421 0.219482004642487 0.24609400331974 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPJ696.02 /DEF=actin cortical patch component (predicted) (PMID 12388763) --- --- --- --- --- --- SPAPJ696.02 // |||actin cortical patch component |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.05213584015181 11.5711707010339 8.62761085974537 14.4049950856332 4.54763280786448 Max fold change at or above threshold 2 14.4049950856332 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777862_at SPBC1773.13.S1 --- 14.4048089128918 --- --- --- --- 6.03629493713379 1.33630275726318 0.558257758617401 3.36494636535645 0.24609400331974 0.780517995357513 0.805419981479645 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1773.13 /DEF=aromatic aminotransferase (predicted) --- --- --- --- --- --- SPBC1773.13 // |||aromatic aminotransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -9.39002905958704 -4.51716117797768 -14.4048089128918 -10.8127381016315 -1.7938755277885 Max fold change at or above threshold 2 14.4048089128918 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774378_at SPBC1105.18c.S1 --- 14.392827323953 --- --- --- --- 2.3403594493866 0.332083523273468 0.372947096824646 0.162605956196785 0.432372987270355 0.932372987270355 0.870360970497131 0.985840022563934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1105.18c /DEF=peptidyl tRNA hydrolase --- --- --- --- --- --- SPBC1105.18c // ||SPBC887.21c|peptidyl tRNA hydrolase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -12.4543792613499 -7.04750246659883 1.36326578804237 -6.27531215368864 -14.392827323953 Max fold change at or above threshold 0 14.392827323953 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778454_at SPAC13G6.09.S1 --- 14.3905839655859 --- --- --- --- 0.504920899868011 6.39906454086304 3.42778301239014 0.390219002962112 0.828612983226776 0.466064006090164 0.24609400331974 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G6.09 /DEF=zinc finger protein --- --- --- --- --- --- SPAC13G6.09 // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 14.3905839655859 12.6734000167864 8.1794104637531 6.78875248239115 -1.29394236578744 Max fold change at or above threshold 2 14.3905839655859 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772353_at SPAC19E9.01c.S1 --- 14.3851859826856 --- --- --- --- 0.544766664505005 1.1263108253479 0.683040738105774 1.25071668624878 0.753906011581421 0.904784977436066 0.828612983226776 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19E9.01c /GEN=nup40 /DEF=nucleoporin --- --- --- --- --- --- SPAC19E9.01c // |nup40||nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.12240990983146 2.06751054852321 14.3851859826856 1.25382256773441 2.29587595523163 Max fold change at or above threshold 0 14.3851859826856 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772324_at SPAC227.06.S1 --- 14.3744986618887 --- --- --- --- 0.3531214594841 3.92400813102722 3.04583334922791 2.27497696876526 0.981445014476776 0.601073980331421 0.5 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC227.06 /DEF=Rab interactor activity (predicted) (PMID 11943201) --- --- --- --- --- --- SPAC227.06 // |||Rab GTPase binding |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.01718318916953 11.1123468303515 14.3744986618887 8.62545525745667 6.44247724873173 Max fold change at or above threshold 2 14.3744986618887 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774273_at SPCC1322.09.S1 --- 14.3703539512037 --- --- --- --- 4.39362668991089 1.04094767570496 5.61829662322998 1.28682124614716 0.24609400331974 0.725830018520355 0.219482004642487 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1322.09 /DEF=conserved fungal protein --- --- --- --- --- --- SPCC1322.09 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.54113572940408 -4.22079494719599 -14.3703539512037 1.2787378217934 -3.41432557401873 Max fold change at or above threshold 2 14.3703539512037 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772823_at SPBC1921.05.S1 --- 14.3507319641937 --- --- --- --- 0.312343209981918 0.778653740882874 4.48235368728638 2.70397162437439 0.976073980331421 0.747314453125 0.432372987270355 0.266357421875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1921.05 /GEN=ape1 /DEF=aminopeptidase --- --- --- --- --- --- SPBC1921.05 // |ape1||aminopeptidase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 9.58434211958801 2.49294275014959 2.54318520520826 14.3507319641937 8.65705268422811 Max fold change at or above threshold 2 14.3507319641937 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776261_at SPCC162.05.S1 --- 14.34911059786 --- --- --- --- 4.68105888366699 1.56105613708496 1.41519844532013 0.326226413249969 0.334473013877869 0.5 0.780517995357513 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC162.05 /GEN=coq3 /DEF=hexaprenyldihydroxybenzoate methyltransferase activity (predicted) --- --- --- --- --- --- SPCC162.05 // |coq3||hexaprenyldihydroxybenzoate methyltransferase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.27226152635681 -2.99864865360202 -3.60812109997632 -3.30770493646783 -14.34911059786 Max fold change at or above threshold 1 14.34911059786 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776288_at SPAC977.17.S1 --- 14.340960060825 --- --- --- --- 4.20023250579834 6.27423620223999 8.98625755310059 0.512419998645782 0.274170011281967 0.334473013877869 0.111571997404099 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC977.17 /DEF=MIP water channel --- --- --- --- --- --- SPAC977.17 // |||MIP water channel|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -14.340960060825 1.4937830688131 1.0646972035957 2.13946669397354 -8.19685515182597 Max fold change at or above threshold 3 14.340960060825 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771879_at SPCC1753.01c.S1 --- 14.3106342021307 --- --- --- --- 0.3275006711483 4.68674230575562 3.49818825721741 1.76327133178711 0.665526986122131 0.567627012729645 0.274170011281967 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1753.01c /GEN=ssb2 /DEF=DNA replication factor A complex (subunit 2) (PMID 8702843) --- --- --- --- --- --- U59386 // Schizosaccharomyces pombe single-stranded DNA binding protein p30 middle subunit (ssb2+) mRNA, complete cds. // gb // 11 // --- /// SPCC1753.01c // |ssb2|SPCC584.06c|single-strand DNA binding protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 7.29756206582541 14.3106342021307 5.30096270858967 10.681468972115 5.38402356735525 Max fold change at or above threshold 2 14.3106342021307 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769415_at SPBC146.02.S1 --- 14.3091292485377 --- --- --- --- 0.400606542825699 2.00881767272949 3.75988411903381 0.456622987985611 0.901123046875 0.633789002895355 0.466064006090164 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC146.02 /DEF=sequence orphan --- --- --- --- --- --- SPBC146.02 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 2.98218919999628 5.01444049954899 14.3091292485377 9.38547856086742 1.13982908208338 Max fold change at or above threshold 1 14.3091292485377 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774834_at SPBC1683.04.S1 --- 14.3005041750754 --- --- --- --- 2.75687766075134 3.47718048095703 3.5569965839386 0.397351384162903 0.24609400331974 0.366210997104645 0.171387001872063 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1683.04 /DEF=beta-glucosidase activity (predicted) --- --- --- --- --- --- SPBC1683.04 // |||beta-glucosidase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.75653122500958 1.2612748583154 -14.3005041750754 1.29022648867531 -6.93813528939691 Max fold change at or above threshold 3 14.3005041750754 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778584_at SPCC663.12.S1 --- 14.2973391930072 --- --- --- --- 5.6264009475708 3.51967811584473 3.43966269493103 0.393527835607529 0.0952147990465164 0.303710997104645 0.466064006090164 0.7998046875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC663.12 /GEN=cid12 /DEF=cid1-related --- --- --- --- --- --- SPCC663.12 // |cid12||RNA-directed RNA polymerase complex subunit Cid12|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.43592892226628 -1.5985555389972 -1.58102647847504 -1.63574206152898 -14.2973391930072 Max fold change at or above threshold 3 14.2973391930072 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777832_at SPAC821.10c.S1 --- 14.2840943646084 --- --- --- --- 8.15880584716797 0.748994946479797 1.14548099040985 0.792513191699982 0.432372987270355 0.696289002895355 0.665526986122131 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC821.10c /GEN=sod1 /DEF=Cu,Zn-superoxide dismutase (PMID 12073089) --- --- --- --- --- --- X66722 // S.pombe SOD mRNA for superoxide dismutase. // gb // 11 // --- /// AB016217 // Schizosaccharomyces pombe mRNA for superoxide dismutase Cu/Zn, complete cds. // gb // 11 // --- /// SPAC821.10c // |sod1||superoxide dismutase Sod1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.89716663649483 -10.8930052005205 -14.2840943646084 -7.12260257086306 -10.2948517862105 Max fold change at or above threshold 1 14.2840943646084 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778210_at SPBC30D10.14.S1 --- 14.2505176839598 --- --- --- --- 3.5534839630127 6.38292217254639 0.456535935401917 3.2406017780304 0.366210997104645 0.5 0.828612983226776 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30D10.14 /DEF=dienelactone hydrolase family --- --- --- --- --- --- SPBC30D10.14 // |||dienelactone hydrolase family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.30734548014108 1.79624341603468 -14.2505176839598 -7.7835799713868 -1.09655064287858 Max fold change at or above threshold 3 14.2505176839598 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776641_at SPAC3G6.01.S1 --- 14.2460141263631 --- --- --- --- 0.662098348140717 0.959150373935699 4.89459180831909 0.842421889305115 0.995850026607513 0.989257991313934 0.822998046875 0.985840022563934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G6.01 /GEN=hrp3 /DEF=CHD family --- --- --- --- --- --- SPAC3G6.01 // |hrp3||CHD family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.3126163525417 1.44865241943158 14.2460141263631 7.39254496263875 1.27235159500213 Max fold change at or above threshold 1 14.2460141263631 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772501_at SPBC19G7.13.S1 --- 14.2398916806582 --- --- --- --- 3.03933215141296 1.54383635520935 4.82994413375854 0.285061985254288 0.5 0.696289002895355 0.432372987270355 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19G7.13 /DEF=Myb family --- --- --- --- --- --- AY584065 // Schizosaccharomyces pombe telomeric DNA binding factor (trf1) mRNA, complete cds. // gb // 11 // --- /// SPBC19G7.13 // |trf1||telomeric DNA binding factor|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.92430761254862 -1.96868802911486 -14.2398916806582 1.58914652730967 -10.6620044363395 Max fold change at or above threshold 2 14.2398916806582 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771044_at SPCC1442.09.S1 --- 14.2139274606722 --- --- --- --- 6.08256340026855 8.12929630279541 5.46808052062988 4.19090223312378 0.0952147990465164 0.030273400247097 0.0952147990465164 0.017822265625 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1442.09 /GEN=trp3 /DEF=anthranilate synthase (component I) --- --- --- --- --- --- SPCC1442.09 // |trp3||anthranilate synthase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- D89256 // gb // 7 // Cross Hyb Matching Probes No No -1.60944191387937 1.33649183211744 -14.2139274606722 -1.11237634071414 -1.45137325137141 Max fold change at or above threshold 4 14.2139274606722 Max fold change at or above threshold AAPAAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1777347_at SPCC338.11c.S1 --- 14.2130416312022 --- --- --- --- 5.64345455169678 5.12261581420898 8.04166889190674 0.397061705589294 0.149657994508743 0.567627012729645 0.129638999700546 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC338.11c /GEN=rrg1 /DEF=methyltransferase (predicted) --- --- --- --- --- --- Z34299 // S.pombe uvi22 mRNA. // gb // 11 // --- /// SPCC338.11c // |rrg1|uvi22|methyltransferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.26093049296465 -1.10167437035647 -2.09988093760593 1.42495501970312 -14.2130416312022 Max fold change at or above threshold 3 14.2130416312022 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775730_at SPBC25H2.13c.S1 --- 14.2114593657028 --- --- --- --- 0.637799799442291 9.06406593322754 7.53652954101563 0.752526521682739 0.99975597858429 0.398925989866257 0.303710997104645 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25H2.13c /GEN=cdc20 /DEF=DNA polymerase epsilon (catalytic subunit a) (PMID 9356477) --- --- --- --- --- --- D89223 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1335. // gb // 11 // --- /// SPBC25H2.13c // |cdc20|pol2|DNA polymerase epsilon |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.25656069503262 14.2114593657028 3.4500184804362 11.8164501581935 1.17987889356624 Max fold change at or above threshold 2 14.2114593657028 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771182_at SPBC17D1.05.S1 --- 14.2066704432235 --- --- --- --- 1.31565427780151 0.96105420589447 18.6910667419434 1.7564160823822 0.567627012729645 0.49169921875 0.0676269978284836 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17D1.05 /DEF=hypothetical protein --- --- --- --- --- --- SPBC17D1.05 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.7172902878338 -1.3689698975689 1.59413702232626 14.2066704432235 1.33501339372925 Max fold change at or above threshold 1 14.2066704432235 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779225_at SPAC27D7.02c.S1 --- 14.1936443672261 --- --- --- --- 0.583348989486694 8.27984809875488 3.96604514122009 3.30605578422546 0.780517995357513 0.303710997104645 0.274170011281967 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27D7.02c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC27D7.02c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 9.59704962883311 14.1936443672261 -2.45028304643133 6.79875205528329 5.66737209424938 Max fold change at or above threshold 3 14.1936443672261 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777101_at SPBC887.12.S1 --- 14.1763550202414 --- --- --- --- 4.97505283355713 0.350940197706223 1.40489959716797 4.08696889877319 0.171387001872063 0.976073980331421 0.432372987270355 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC887.12 /DEF=P-type ATPase (PMID 12707717) --- --- --- --- --- --- SPBC887.12 // |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.2678454848192 -14.1763550202414 -1.5519902133409 -3.54121593001092 -1.21729647491336 Max fold change at or above threshold 2 14.1763550202414 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771659_at SPAC227.03c.S1 --- 14.1729429826795 --- --- --- --- 0.683601856231689 6.20303058624268 9.68865013122559 4.09619426727295 0.753906011581421 0.696289002895355 0.194580003619194 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC227.03c /DEF=mitochondrial carrier --- --- --- --- --- --- SPAC227.03c // |||mitochondrial pyruvate transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.80493534884143 9.0740399981306 1.47385127966535 14.1729429826795 5.99207598682214 Max fold change at or above threshold 3 14.1729429826795 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773794_at SPCC757.13.S1 --- 14.164376873537 --- --- --- --- 11.2537965774536 16.8731956481934 10.6342544555664 7.15923118591309 0.303710997104645 0.0239257998764515 0.0676269978284836 0.111571997404099 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC757.13 /DEF=localization membrane (predicted) --- --- --- --- --- --- SPCC757.13 // |||membrane transporter |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.11649477756623 1.49933362772861 -14.164376873537 -1.05825910264569 -1.57192808630028 Max fold change at or above threshold 4 14.164376873537 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1770461_at SPBC15C4.01c.S1 --- 14.1588179304472 --- --- --- --- 0.329044669866562 4.65888357162476 0.675230324268341 0.536158919334412 0.850341975688934 0.55908203125 0.780517995357513 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC15C4.01c /GEN=oca3 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC15C4.01c // |oca3||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.03960870243722 14.1588179304472 12.5848602836705 2.05209318401106 1.62944113196497 Max fold change at or above threshold 1 14.1588179304472 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776991_at SPAC926.08c.S1 --- 14.1485905376286 --- --- --- --- 1.48280608654022 7.30699968338013 20.9796161651611 3.85202288627625 0.567627012729645 0.334473013877869 0.334473013877869 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC926.08c /DEF=RNA-binding protein --- --- --- --- --- --- SPAC926.08c // |||Brix domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.46237876224638 4.92781878204269 -1.36566860530226 14.1485905376286 2.59779273988821 Max fold change at or above threshold 3 14.1485905376286 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776990_at SPBC2F12.12c.S1 --- 14.1418763907837 --- --- --- --- 9.59002685546875 2.30669188499451 0.678129732608795 1.21872782707214 0.149657994508743 0.828612983226776 0.805419981479645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2F12.12c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC2F12.12c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.87313994249647 -4.15748064050244 -11.8957663971079 -14.1418763907837 -7.8688831439155 Max fold change at or above threshold 1 14.1418763907837 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772644_at SPBC1815.01.S1 --- 14.1179791970571 --- --- --- --- 1.69137489795685 11.167031288147 23.8787956237793 6.63755941390991 0.962401986122131 0.696289002895355 0.274170011281967 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1815.01 /GEN=eno101 /DEF=enolase --- --- --- --- --- --- U13799 // Schizosaccharomyces pombe enolase (ENO1) mRNA, complete cds. // gb // 10 // --- /// L37084 // Schizosaccharomyces pombe phosphopyruvate hydratase mRNA, complete cds. // gb // 11 // --- /// SPBC1815.01 // |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.1617436953779 6.60233949412194 1.3158899235221 14.1179791970571 3.92435729176776 Max fold change at or above threshold 3 14.1179791970571 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779570_at SPBP8B7.14c.S1 --- 14.1170227462515 --- --- --- --- 5.64928722381592 2.92247796058655 5.06109189987183 0.96605783700943 0.533936023712158 0.567627012729645 0.334473013877869 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.14c /GEN=dpb2 /DEF=DNA polymerase epsilon (subunit b) (PMID 12925774) --- --- --- --- --- --- SPBP8B7.14c // |dpb2||DNA polymerase epsilon |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.76674001107995 -1.93304698957664 -14.1170227462515 -1.11621905619991 -5.84777329823657 Max fold change at or above threshold 3 14.1170227462515 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774172_at YNL006W.S1 Protein required for the transport of amino acid permease Gap1p from the Golgi to the cell surface; component of the TOR signaling pathway; associates with both Tor1p and Tor2p; contains a WD-repeat 14.1169851915864 4536.47998046875 376.916305541992 LST8 6810 // transport // inferred from mutant phenotype /// 7165 // signal transduction // inferred from mutant phenotype 139 // Golgi membrane // inferred from direct assay /// 300 // peripheral to membrane of membrane fraction // inferred from direct assay /// 10008 // endosome membrane // inferred from direct assay 5515 // protein binding // inferred from physical interaction 342.091094970703 4829.294921875 4243.6650390625 411.741516113281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL006W /GEN=LST8 /DB_XREF=GI:6324322 /SEG=NC_001146:+620066,620977 /DEF=Required for amino acid permease transport from the Golgi to the cell surface /NOTE=Lst8p; go_component: Golgi membrane [goid GO:0000139] [evidence IDA] [pmid 12719473]; go_component: endosome membrane [goid GO:0010008] [evidence IDA] [pmid 12719473]; go_component: peripheral to membrane of membrane fraction [goid GO:0000300] [evidence IDA] [pmid 12719473]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12631735]; go_process: signal transduction [goid GO:0007165] [evidence IMP] [pmid 12719473]; go_process: transport [goid GO:0006810] [evidence IMP] [pmid 9409822] --- --- --- --- --- --- S0004951 // LST8 SGDID:S0004951, Chr XIV from 620067-620978, Verified ORF // sgd // 11 // --- /// GENSCAN00000020033 // cdna:Genscan chromosome:SGD1:XIV:620067:620978:1 // ensembl // 11 // --- /// GENEFINDER00000020621 // cdna:GeneFinder chromosome:SGD1:XIV:620067:620978:1 // ensembl // 11 // --- /// YNL006W // cdna:known chromosome:SGD1:XIV:620067:620978:1 gene:YNL006W // ensembl // 11 // --- --- No cerevisiae_gene 3.42950215800845 14.1169851915864 1.62369303352355 12.4050730973454 1.20360197083921 Max fold change at or above threshold 4 14.1169851915864 Max fold change at or above threshold -0.876134569062252 0.983026164764466 0.740385062492166 -0.847276658194381 2456.69814300537 2413.56422027496 0.982442318828129 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770986_at SPBC8D2.18c.S1 --- 14.1162196887957 --- --- --- --- 11.4920358657837 8.32122039794922 8.02971172332764 5.27485704421997 0.111571997404099 0.274170011281967 0.129638999700546 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8D2.18c /DEF=adenosylhomocysteinase (predicted) --- --- --- --- --- --- SPBC8D2.18c // |||adenosylhomocysteinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.23147394178418 -1.38105173474505 -14.1162196887957 -1.43118909641518 -2.17864404086103 Max fold change at or above threshold 4 14.1162196887957 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779297_at YMR175W-A.S1 Identified by expression profiling and mass spectrometry 14.0921682590664 56.2711143493652 484.585205078125 --- --- --- --- 543.222595214844 54.2073554992676 58.3348731994629 425.947814941406 0.000244141003349796 0.000244141003349796 0.00585938012227416 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR175W-A /GEN=SIP18 /DB_XREF=GI:33438855 /SEG=NC_001145:+611313,611507 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Ymr175w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028848 // YMR175W-A SGDID:S0028848, Chr XIII from 611313-611507, Uncharacterized ORF // sgd // 11 // --- /// YMR175W-A // cdna:known chromosome:SGD1:XIII:611313:611507:1 gene:YMR175W-A // ensembl // 11 // --- --- No cerevisiae_gene -14.0921682590664 -10.0211971274301 -1.39497830886666 -9.31214152737449 -1.27532663899114 Max fold change at or above threshold 4 14.0921682590664 Max fold change at or above threshold 1.08301181603665 -0.858410786155066 -0.842024269941857 0.617423240060276 270.428159713745 251.885003895348 0.931430381222039 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1777475_at SPBC19G7.11c.S1 --- 14.0868188925147 --- --- --- --- 0.831817388534546 11.7176609039307 1.05163097381592 1.53057217597961 0.850341975688934 0.334473013877869 0.665526986122131 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19G7.11c /DEF=sequence orphan --- --- --- --- --- --- SPBC19G7.18c // ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.17786333495276 14.0868188925147 1.43073122005678 1.26425702120585 1.84003387892155 Max fold change at or above threshold 1 14.0868188925147 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779562_at SPBC1348.13.S1 --- 14.0757739543915 --- --- --- --- 1.40757739543915 0.0481190495193005 0.241798833012581 0.737954020500183 0.747314453125 0.969726979732513 0.219482004642487 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1348.13 /DEF=similar to fragment of cox1 intron protein --- --- --- --- --- --- SPBC1348.13 // ||SPAC1348.13|similar to fragment of cox1 intron protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -13.1874758173213 -14.0757739543915 -14.0757739543915 -5.82127456076643 -1.90740528046056 Max fold change at or above threshold 0 14.0757739543915 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775813_at SPBC800.14c.S1 --- 14.0745844714821 --- --- --- --- 12.9781970977783 5.80694103240967 5.43580722808838 0.922101616859436 0.219482004642487 0.601073980331421 0.398925989866257 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC800.14c /DEF=hypothetical protein --- --- --- --- --- --- SPBC800.14c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.23324910002389 -2.23494556348075 -1.5634615799978 -2.38753814350079 -14.0745844714821 Max fold change at or above threshold 3 14.0745844714821 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772236_at SPBC27B12.09c.S1 --- 14.0709304338949 --- --- --- --- 0.369883507490158 2.33076238632202 5.20460510253906 5.03683614730835 0.753906011581421 0.466064006090164 0.334473013877869 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC27B12.09c /DEF=transporter --- --- --- --- --- --- SPBC27B12.09c // |||FAD transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 12.5254502152123 6.30134174442487 1.07367633395914 14.0709304338949 13.6173580203285 Max fold change at or above threshold 2 14.0709304338949 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769928_at SPBC11C11.04c.S1 --- 14.0707203326133 --- --- --- --- 0.509504377841949 1.69756722450256 1.88396048545837 0.633375704288483 0.888427972793579 0.601073980331421 0.5 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11C11.04c /GEN=alp1 /DEF=tubulin specific chaperone (cofactor D) --- --- --- --- --- --- SPBC11C11.04c // |alp1||tubulin specific chaperone |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.70371643741012 3.33180105673038 14.0707203326133 3.69763355800406 1.24312122100148 Max fold change at or above threshold 0 14.0707203326133 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772808_at SPAC16A10.01.S1 --- 14.0603737530582 --- --- --- --- 2.66609668731689 0.323587030172348 1.10159122943878 0.189617767930031 0.601073980331421 0.997070014476776 0.919434010982513 0.974609375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16A10.01 /DEF=conserved protein (mainly fungal and bacterial) --- --- --- --- --- --- SPAC16A10.01 // |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -9.5440124975609 -8.23919514294774 -3.91664637403776 -2.42022323350847 -14.0603737530582 Max fold change at or above threshold 1 14.0603737530582 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775991_s_at YCL073C.S1 Protein of unconfirmed function; displays a topology characteristic of the Major Facilitators Superfamily of membrane proteins; coding sequence 98% identical to that of YCL073C /// Protein of unconfirmed function; displays a topology characteristic of the Major Facilitators Superfamily of membrane proteins; coding sequence 98% identical to that of YKR106W 14.0603331061602 5.73878788948059 0.757267594337463 --- 6810 // transport // inferred from sequence similarity 16020 // membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity 0.604338049888611 2.98038148880005 8.49719429016113 0.910197138786316 0.919434010982513 0.696289002895355 0.398925989866257 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL073C /DB_XREF=GI:10383750 /SEG=NC_001135:-6479,8326 /DEF=Protein of unconfirmed function; displays a topology characteristic of the Major Facilitators Superfamily of membrane proteins; coding sequence 98% identical to that of YKR106W /NOTE=Ycl073cp; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 10744769]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 10744769]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 10744769] --- --- --- --- --- S0000575 // span:60-79,122-141,151-173,185-207,217-236,276-293,308-325,345-367,382-404,411-430,440-462,545-567 // numtm:12 /// S0001814 // span:60-79,122-141,151-173,185-207,217-236,276-293,308-325,345-367,382-404,411-430,440-462,545-567 // numtm:12 S0000575 // YCL073C SGDID:S0000575, Chr III from 8326-6479, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0001814 // YKR106W SGDID:S0001814, Chr XI from 661080-662927, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022414 // cdna:Genscan chromosome:SGD1:III:6479:7207:-1 // ensembl // 11 // --- /// GENEFINDER00000023302 // cdna:GeneFinder chromosome:SGD1:III:6479:7918:-1 // ensembl // 11 // --- /// GENEFINDER00000023009 // cdna:GeneFinder chromosome:SGD1:XI:661488:662927:1 // ensembl // 11 // --- /// GENSCAN00000018507 // cdna:Genscan chromosome:SGD1:XI:662199:662927:1 // ensembl // 11 // --- /// YCL073C // cdna:known chromosome:SGD1:III:6479:8326:-1 gene:YCL073C // ensembl // 11 // --- /// YKR106W // cdna:known chromosome:SGD1:XI:661080:662927:1 gene:YKR106W // ensembl // 11 // --- --- No cerevisiae_gene 1.42116931367743 4.93164626875534 11.8831897474236 14.0603331061602 1.50610595999057 Max fold change at or above threshold 2 14.0603331061602 Max fold change at or above threshold -0.723281941463229 -0.0732248199016413 1.43610930720923 -0.639602545844358 3.24802774190903 3.65513023409948 1.12533836670717 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771590_at SPCC24B10.13.S1 --- 14.04323937702 --- --- --- --- 1.70267724990845 9.52078151702881 23.9111042022705 2.61417269706726 0.601073980331421 0.334473013877869 0.0805663987994194 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC24B10.13 /GEN=skb5 /DEF=interacts physically with Shk1p (PMID 10593886) --- --- --- --- --- --- SPCC24B10.13 // |skb5||Shk1 kinase binding protein 5|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 6.96053879650149 5.59165368395023 4.931156363062 14.04323937702 1.53533072530794 Max fold change at or above threshold 3 14.04323937702 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769762_at SPBC543.09.S1 --- 14.0348712909962 --- --- --- --- 2.64272713661194 1.23489713668823 3.63233923912048 5.01159477233887 0.633789002895355 0.601073980331421 0.533936023712158 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC543.09 /DEF=respiratory chain complex assembly protein (predicted) --- --- --- --- --- --- SPBC543.09 // |||respiratory chain complex assembly protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -14.0348712909962 -2.14003827371343 2.60019806212352 1.37446624314656 1.89637238854856 Max fold change at or above threshold 3 14.0348712909962 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779686_at SPBC1683.01.S1 --- 14.0334409192861 --- --- --- --- 8.84175109863281 4.95747947692871 4.198561668396 2.02730870246887 0.0676269978284836 0.219482004642487 0.194580003619194 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1683.01 /DEF=inorganic phosphate transporter (predicted) --- --- --- --- --- --- SPBC1683.01 // |||inorganic phosphate transporter |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.91409592415284 -1.78351743860582 -14.0334409192861 -2.10590001932988 -4.36132449284377 Max fold change at or above threshold 3 14.0334409192861 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773714_at SPAC25B8.10.S1 --- 14.0323432102676 --- --- --- --- 10.3044023513794 5.01984024047852 6.76281309127808 6.13163137435913 0.194580003619194 0.366210997104645 0.303710997104645 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25B8.10 /DEF=methyltransferase (predicted) --- --- --- --- --- --- SPAC25B8.10 // |||trans-aconitate 3-methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -14.0323432102676 -2.05273511859754 -2.5611840240148 -1.52368581125935 -1.68053193713988 Max fold change at or above threshold 4 14.0323432102676 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777837_at SPAC3F10.16c.S1 --- 14.0314560826178 --- --- --- --- 1.18507122993469 16.6282749176025 15.8722763061523 7.6957836151123 0.696289002895355 0.219482004642487 0.194580003619194 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3F10.16c /DEF=GTPase activity (predicted) --- --- --- --- --- --- SPAC3F10.16c // |||GTPase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.74745083490777 14.0314560826178 4.62498327649521 13.3935209169048 6.4939418160851 Max fold change at or above threshold 3 14.0314560826178 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1774208_at SPBC1198.06c.S1 --- 14.027180581904 --- --- --- --- 6.86817836761475 0.489633560180664 5.07202672958374 0.765055298805237 0.0239257998764515 0.828612983226776 0.171387001872063 0.601073980331421 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1198.06c /DEF=glycosylhydrolase (predicted) --- --- --- --- --- --- SPBC1198.06c // |||glycosylhydrolase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.01851777629728 -14.027180581904 -2.19224831332457 -1.35412897719063 -8.97736200029013 Max fold change at or above threshold 2 14.027180581904 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1776340_at SPAC22H10.12c.S1 --- 14.0261263092576 --- --- --- --- 0.342627972364426 4.80574321746826 2.12272524833679 1.75957584381104 0.919434010982513 0.533936023712158 0.633789002895355 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22H10.12c /GEN=gdi1 /DEF=GTPase activator activity --- --- --- --- --- --- SPAC22H10.12c // |gdi1|sec19|GDP dissociation inhibitor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 11.246595823649 14.0261263092576 2.52426755638385 6.19542308144946 5.13552887018669 Max fold change at or above threshold 1 14.0261263092576 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777354_at SPAC664.14.S1 --- 13.989395086299 --- --- --- --- 0.952310681343079 9.57958030700684 6.48343992233276 2.29401803016663 0.919434010982513 0.567627012729645 0.466064006090164 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC664.14 /DEF=Amt ammonium transporter --- --- --- --- --- --- SPAC664.14 // |||Amt ammonium transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.94581614886586 10.0593015437949 13.989395086299 6.8081142523666 2.40889667112763 Max fold change at or above threshold 2 13.989395086299 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772649_at SPAC6G9.05.S1 --- 13.9711990125932 --- --- --- --- 0.403913170099258 2.71890234947205 2.24274086952209 5.64315128326416 0.79931640625 0.71875 0.601073980331421 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G9.05 /DEF=Nudix family hydrolase --- --- --- --- --- --- SPAC6G9.05 // |||Nudix family hydrolase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 7.54265972221659 6.73140306072193 10.6092713853836 5.55253216668067 13.9711990125932 Max fold change at or above threshold 2 13.9711990125932 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774959_at SPBC4C3.04c.S1 --- 13.9711193086054 --- --- --- --- 1.69610500335693 0.933186531066895 0.366183161735535 0.12140079587698 0.780517995357513 0.981445014476776 0.969726979732513 0.99975597858429 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4C3.04c /DEF=guanyl-nucleotide exchange factor activity (predicted) --- --- --- --- --- --- SPBC4C3.04c // |||guanyl-nucleotide exchange factor activity |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.17742131101241 -1.81754123842509 1.00078563616991 -4.63184870467063 -13.9711193086054 Max fold change at or above threshold 0 13.9711193086054 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779585_at SPBC1348.12.S1 --- 13.9687199441415 --- --- --- --- 6.62461948394775 2.91973209381104 0.474246710538864 3.11979413032532 0.5 0.567627012729645 0.850341975688934 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1348.12 /DEF=zinc finger protein --- --- --- --- --- --- SPBC1348.12 // ||SPAC1348.12|zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -13.7679466766891 -2.26891347257167 -3.27367205039343 -13.9687199441415 -2.12341558680251 Max fold change at or above threshold 3 13.9687199441415 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771717_at SPCC548.02c.S1 --- 13.9666164115237 --- --- --- --- 0.172559037804604 0.171176642179489 2.02871704101563 2.41006588935852 0.99804699420929 0.625732421875 0.601073980331421 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC548.02c /GEN=wtf3 /DEF=wtf element --- --- --- --- --- --- SPCC548.02c // |wtf3|meu9, SPCC548.02|wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.37825888079531 -1.0080758426355 -1.72559037804604 11.7566548053706 13.9666164115237 Max fold change at or above threshold 0 13.9666164115237 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775747_at SPBC29A10.06c.S1 --- 13.9534378138441 --- --- --- --- 6.6473822593689 15.9426488876343 14.4788103103638 8.15963172912598 0.171387001872063 0.0561522990465164 0.0461426004767418 0.129638999700546 A M P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A10.06c /DEF=sequence orphan --- --- --- --- --- --- SPBC29A10.06c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -13.9534378138441 2.39833490321164 1.4767263119997 2.17812211565796 1.22749548781036 Max fold change at or above threshold 4 13.9534378138441 Max fold change at or above threshold AAMAPA No 4 0 AMPA 2 1 1 No No x = 1
1779565_at SPAC20H4.09.S1 --- 13.9399137920651 --- --- --- --- 7.38146114349365 3.47461700439453 0.529519855976105 1.06430506706238 0.111571997404099 0.274170011281967 0.525390625 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20H4.09 /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPAC20H4.09 // |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.05301102747459 -2.12439561947631 -3.26584385789529 -13.9399137920651 -6.93547496101607 Max fold change at or above threshold 2 13.9399137920651 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773596_at SPAC17G6.05c.S1 --- 13.9387308943892 --- --- --- --- 1.10709631443024 15.4315176010132 6.02780103683472 3.79366207122803 0.533936023712158 0.149657994508743 0.466064006090164 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G6.05c /DEF=endosome associated protein (predicted) --- --- --- --- --- --- SPAC17G6.05c // |||BRO1 domain protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.09592056412645 13.9387308943892 -1.42845714581034 5.44469433983881 3.42667753634463 Max fold change at or above threshold 3 13.9387308943892 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777375_at SPAC3A12.03c.S1 --- 13.9373793083883 --- --- --- --- 0.554665446281433 5.0324330329895 7.73058271408081 3.37159538269043 0.904784977436066 0.390625 0.129638999700546 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A12.03c /DEF=zinc finger protein --- --- --- --- --- --- SPAC3A12.03c // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 7.11868693544265 9.07291605548488 11.709645936885 13.9373793083883 6.07861081899756 Max fold change at or above threshold 3 13.9373793083883 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769522_at SPCC757.05c.S1 --- 13.9355070931128 --- --- --- --- 8.82443141937256 7.58949851989746 0.633233606815338 3.42548632621765 0.303710997104645 0.334473013877869 0.432372987270355 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC757.05c /DEF=peptidase family M20 --- --- --- --- --- --- SPCC757.05c // |||peptidase family M20|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.73436874824119 -1.16271600768318 -1.95712864663278 -13.9355070931128 -2.57611053701572 Max fold change at or above threshold 3 13.9355070931128 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770643_at SPCC4B3.14.S1 --- 13.9286107343373 --- --- --- --- 5.45848560333252 1.709104180336 1.93178522586823 0.472916334867477 0.567627012729645 0.633789002895355 0.888427972793579 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4B3.14 /GEN=cwf20 /DEF=involved in mRNA splicing (predicted) --- --- --- --- --- --- SPCC4B3.14 // |cwf20||complexed with Cdc5 protein Cwf20 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- Y07599 // gb // 8 // Cross Hyb Matching Probes No No -13.9286107343373 -3.19376996799541 -1.60478207161934 -2.82561722195553 -11.5421802988939 Max fold change at or above threshold 1 13.9286107343373 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777768_at SPAC3G6.08.S1 --- 13.9258079459708 --- --- --- --- 4.8601975440979 4.31721496582031 5.3675799369812 0.538478136062622 0.533936023712158 0.567627012729645 0.432372987270355 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G6.08 /DEF=Erv1Alr family --- --- --- --- --- --- SPAC3G6.08 // |erv1||Erv1/Alr family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -13.9258079459708 -1.12577149448809 -11.8947912230373 1.10439542596359 -9.02580294092514 Max fold change at or above threshold 3 13.9258079459708 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770305_at SPBC4B4.04.S1 --- 13.925476763964 --- --- --- --- 3.92173337936401 0.281622916460037 4.82745122909546 4.64468193054199 0.432372987270355 0.601073980331421 0.24609400331974 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4B4.04 /DEF=translation initiation factor --- --- --- --- --- --- SPBC4B4.04 // |||translation initiation factor eIF2A |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.18580502016482 -13.925476763964 -5.28329585806324 1.23094834914002 1.18434413593288 Max fold change at or above threshold 3 13.925476763964 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774034_at SPBC16C6.09.S1 --- 13.9235011057492 --- --- --- --- 11.6648406982422 8.16359424591064 0.837780714035034 7.67831230163574 0.0561522990465164 0.432372987270355 0.753906011581421 0.129638999700546 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16C6.09 /DEF=glycosyl transferase family 39 --- --- --- --- --- --- SPBC16C6.09 // |ogm4|oma4|protein O-mannosyltransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -13.5911898464473 -1.42888540841988 -3.49275533237863 -13.9235011057492 -1.51919331227999 Max fold change at or above threshold 3 13.9235011057492 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1778397_at SPBC1A4.06c.S1 --- 13.922363606316 --- --- --- --- 8.32037353515625 0.597626507282257 9.85637950897217 1.07782065868378 0.274170011281967 0.919434010982513 0.398925989866257 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1A4.06c /DEF=involved in mitochondrial matrix protein import (ISS) --- --- --- --- --- --- SPBC1A4.06c // |||mitochondrial matrix protein import protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.43826389095527 -13.922363606316 -7.30156713629286 1.18460781445999 -7.71962707164752 Max fold change at or above threshold 2 13.922363606316 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771571_at SPCC777.09c.S1 --- 13.9172111345578 --- --- --- --- 11.8985090255737 4.17315053939819 10.8521757125854 4.93830156326294 0.111571997404099 0.274170011281967 0.366210997104645 0.389892578125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC777.09c /GEN=arg1 /DEF=acetylornithine aminotransferase --- --- --- --- --- --- D89114 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0399. // gb // 10 // --- /// SPCC777.09c // |arg1||acetylornithine aminotransferase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -13.9172111345578 -2.85120532155296 -5.2569951551887 -1.09641691589778 -2.40943346070423 Max fold change at or above threshold 4 13.9172111345578 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774536_at SPAC25G10.06.S1 --- 13.9160436920938 --- --- --- --- 0.355501681566238 4.94717693328857 3.19936513900757 0.116127163171768 0.466064006090164 0.0676269978284836 0.24609400331974 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25G10.06 /GEN=rps2801 /DEF=40S ribosomal protein S28 --- --- --- --- --- --- SPAC25G10.06 // |rps2801|rps28-1|40S ribosomal protein S28|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.06496624054158 13.9160436920938 11.0269741178743 8.99957807488303 -3.06131375172234 Max fold change at or above threshold 2 13.9160436920938 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773829_at YDL247W.S1 Alpha-glucoside permease, transports maltose, maltotriose, alpha-methylglucoside, and turanose; identical to Mph3p; encoded in a subtelomeric position in a region likely to have undergone duplication 13.8948253100211 4.18585288524628 1.92043669521809 MPH2 8643 // carbohydrate transport // inferred from direct assay /// 8643 // carbohydrate transport // inferred from sequence similarity 5886 // plasma membrane // inferred from sequence similarity 15144 // carbohydrate transporter activity // inferred from sequence similarity /// 15581 // maltose porter activity // inferred from direct assay /// 15581 // maltose porter activity // inferred from sequence similarity 3.58300709724426 1.876957654953 6.49474811553955 0.25786629319191 0.194580003619194 0.665526986122131 0.0375977009534836 0.904784977436066 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL247W /GEN=MPH2 /DB_XREF=GI:6319954 /SEG=NC_001136:+5985,7814 /DEF=Alpha-glucoside permease, transports maltose, maltotriose, alpha-methylglucoside, and turanose; identical to Mph3p; encoded in a subtelomeric position in a region likely to have undergone duplication /NOTE=Mph2p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 12210897]; go_function: carbohydrate transporter activity [goid GO:0015144] [evidence ISS] [pmid 12210897]; go_function: maltose porter activity [goid GO:0015581] [evidence IDA,ISS] [pmid 12210897]; go_process: carbohydrate transport [goid GO:0008643] [evidence IDA,ISS] [pmid 12210897] --- --- --- --- --- S0002406 // span:101-123,143-165,172-194,199-221,234-256,276-298,364-386,396-418,427-449,459-481,494-516,526-543 // numtm:12 S0002406 // MPH2 SGDID:S0002406, Chr IV from 5985-7814, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023643 // cdna:GeneFinder chromosome:SGD1:IV:5985:7814:1 // ensembl // 11 // --- /// YDL247W // cdna:known chromosome:SGD1:IV:5985:7814:1 gene:YDL247W // ensembl // 11 // --- --- No cerevisiae_gene -3.43372772182553 -1.90894402321185 -1.57955100125748 1.8126528748812 -13.8948253100211 Max fold change at or above threshold 2 13.8948253100211 Max fold change at or above threshold 0.198749368434019 -0.441183392748156 1.29093252766452 -1.04849850335038 3.05314479023218 2.66598234342558 0.873192241637136 AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1775203_at SPCC1494.06c.S1 --- 13.8919528087158 --- --- --- --- 1.02574288845062 14.2495718002319 13.9631233215332 5.21707344055176 0.601073980331421 0.334473013877869 0.111571997404099 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1494.06c /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPCC1494.06c // |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.3518429927157 13.8919528087158 1.27856652668267 13.6126932769911 5.08614146809451 Max fold change at or above threshold 3 13.8919528087158 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774803_at SPAC664.13.S1 --- 13.8915804671585 --- --- --- --- 0.361640453338623 4.40458297729492 5.02375745773315 1.14069104194641 0.850341975688934 0.144775390625 0.398925989866257 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC664.13 /DEF=dubious --- --- --- --- --- --- SPAC664.13 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 2.28125086529143 12.1794532017431 1.11830280914803 13.8915804671585 3.15421306276906 Max fold change at or above threshold 2 13.8915804671585 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774830_at SPAC12B10.01c.S1 --- 13.8854213521782 --- --- --- --- 4.00745630264282 0.845590591430664 4.35415077209473 0.810078918933868 0.303710997104645 0.904784977436066 0.194580003619194 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12B10.01c /DEF=ubiquitin-protein ligase (E3) (predicted) --- --- --- --- --- --- SPAC12B10.01c // ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -13.8854213521782 -4.73923946559358 -6.27911824443841 1.08651235179365 -4.94699492725594 Max fold change at or above threshold 2 13.8854213521782 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779729_at SPAC1952.07.S1 --- 13.8773832415707 --- --- --- --- 0.273997575044632 3.8023693561554 0.231865167617798 0.12621696293354 0.919434010982513 0.5 0.850341975688934 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1952.07 /GEN=rad1 /DEF=involved in DNA repair (PMID 7254221) --- --- --- --- --- --- Z28385 // S.pombe (972) RAD1 mRNA. // gb // 11 // --- /// SPAC1952.07 // |rad1||checkpoint clamp complex protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.60783994479311 13.8773832415707 1.1484334118316 -1.18171081003544 -2.17084588851108 Max fold change at or above threshold 1 13.8773832415707 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772345_at SPBC21C3.04c.S1 --- 13.8767275794209 --- --- --- --- 6.32542181015015 1.99190843105316 0.545588731765747 1.96423363685608 0.0952147990465164 0.633789002895355 0.665526986122131 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21C3.04c /DEF=mitochondrial ribosomal protein subunit L34 --- --- --- --- --- --- SPBC21C3.04c // |||mitochondrial ribosomal protein subunit L34|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.98911796648182 -3.17555853047209 -13.8767275794209 -11.5937544928366 -3.22030011677965 Max fold change at or above threshold 1 13.8767275794209 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770670_at SPAC6F6.10c.S1 --- 13.8669881956771 --- --- --- --- 6.46979904174805 1.65517747402191 5.94094228744507 0.46656122803688 0.171387001872063 0.533936023712158 0.274170011281967 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F6.10c /GEN=arc2 /DEF=ARP23 actin-organizing complex --- --- --- --- --- --- SPAC6F6.10c // |arc2|arc34|ARP2/3 actin-organizing complex Arc34p subunit|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -6.57931457189353 -3.90882497091209 -1.43639264530318 -1.08901900215739 -13.8669881956771 Max fold change at or above threshold 2 13.8669881956771 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772403_at SPAC926.02.S1 --- 13.8534755599429 --- --- --- --- 5.28984689712524 5.56384229660034 5.97620391845703 0.381842583417892 0.466064006090164 0.432372987270355 0.171387001872063 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC926.02 /DEF=hypothetical protein --- --- --- --- --- --- SPAC926.02 // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -10.5638039019543 1.05179647063585 -1.40368036726236 1.12974988400984 -13.8534755599429 Max fold change at or above threshold 3 13.8534755599429 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778909_at SPAC27F1.09c.S1 --- 13.8488594754401 --- --- --- --- 0.36259800195694 2.66007709503174 5.021568775177 0.189712181687355 0.850341975688934 0.665526986122131 0.366210997104645 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27F1.09c /GEN=prp10 /DEF=involved in mRNA splicing (IGI) (PMID 9003295) --- --- --- --- --- --- SPAC27F1.09c // |prp10|sap155|SAP155|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.36142640980309 7.33616037781597 -1.19158636177332 13.8488594754401 -1.9113058462134 Max fold change at or above threshold 2 13.8488594754401 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778787_at SPAC6C3.05.S1 --- 13.8422945032791 --- --- --- --- 3.46060085296631 0.250001966953278 2.74830222129822 2.45945286750793 0.424072265625 0.870360970497131 0.219482004642487 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6C3.05 /DEF=sequence orphan --- --- --- --- --- --- SPAC6C3.05 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.87514389961862 -13.8422945032791 -10.948487322238 -1.25917769383151 -1.40706126093516 Max fold change at or above threshold 2 13.8422945032791 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
AFFX-r2-TagIN-3_at AFFX-r2-TagIN-3 --- 13.8372502357122 --- --- --- --- 6.01352167129517 1.68624687194824 0.794056057929993 0.434589356184006 0.466064006090164 0.725830018520355 0.805419981479645 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Clone 84A3, synthetic insert (1944 bp)+ poly A tail (21 bp), 3 prime target sequence 1345-1944 --- --- --- --- --- --- AFFX-r2-TagIN-3 // --- // unknown // --- // --- /// AFFX-r2-TagIN-3 // --- // unknown // --- // --- /// AFFX-r2-TagIN-3 // --- // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-TagIN-3 // --- // unknown // --- // --- /// AFFX-r2-TagIN-3 // --- // affx // --- // --- /// AFFX-r2-TagIN-3 // --- // affx // --- // --- /// AFFX-r2-TagIN-3 // --- // affx // --- // --- /// AFFX-r2-TagIN-3 // --- // affx // --- // --- /// AFFX-r2-TagIN-3 // --- // affx // --- // --- /// AFFX-r2-TagIN-3 // --- // affx // --- // --- /// AFFX-r2-TagIN-3 // --- // affx // --- // --- /// AFFX-r2-TagIN-3 // --- // affx // --- // --- /// AFFX-r2-TagIN-3 // --- // affx // --- // --- /// AFFX-r2-TagIN-3 // --- // affx // --- // --- /// AFFX-r2-TagIN-3 // --- // affx // --- // --- /// AFFX-r2-TagIN-3 // --- // affx // --- // --- --- AFFX_control No -1.01865855763577 -3.56621665032197 -9.05617720746119 -7.57317019527775 -13.8372502357122 Max fold change at or above threshold 1 13.8372502357122 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773913_at SPCC191.08.S1 --- 13.8267081092484 --- --- --- --- 10.2040138244629 4.75437021255493 10.485613822937 0.737993001937866 0.149657994508743 0.398925989866257 0.0461426004767418 0.753906011581421 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC191.08 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC191.08 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.27579534639861 -2.14623880099135 -3.72273729824103 1.02759698323801 -13.8267081092484 Max fold change at or above threshold 3 13.8267081092484 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1774013_at SPAC17H9.09c.S1 --- 13.8261096941469 --- --- --- --- 7.0628342628479 5.36117553710938 0.510833084583282 1.66999709606171 0.24609400331974 0.129638999700546 0.567627012729645 0.296142578125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17H9.09c /GEN=ras1 /DEF=GTPase --- --- --- --- --- --- SPAC17H9.09c // |ras1|ste5|GTPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.11621296432074 -1.31740403088089 -1.80091390212742 -13.8261096941469 -4.22924942774088 Max fold change at or above threshold 2 13.8261096941469 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774182_at SPCC285.06c.S1 --- 13.8260520590046 --- --- --- --- 0.380510687828064 0.627842545509338 5.26096057891846 0.480513840913773 0.870360970497131 0.5 0.219482004642487 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC285.06c /GEN=wtf17 /DEF=wtf element --- --- --- --- --- --- SPCC285.06c // |wtf17|SPCC285.06c|wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- SPCC548.02c // sanger // 1 // Cross Hyb Matching Probes No No 6.0565847576172 1.64999976503428 4.03892786709086 13.8260520590046 1.26281299391752 Max fold change at or above threshold 1 13.8260520590046 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-U89963-1_at AFFX-Sc-U89963-1 --- 13.8205720976838 --- --- --- --- 2.84780025482178 0.527983963489532 0.301766395568848 0.206055164337158 0.533936023712158 0.870360970497131 0.850341975688934 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL U89963 /FEA=CDS_1 /DB_XREF=AAB68656.1 GI:2293128 /PROD=VP16 /NOTE=Activation domain of VP16 --- --- --- --- --- --- AFFX-Sc-U89963-1 // --- // affx // --- // --- --- No No 1.5946147779655 -5.39372490785553 -5.95053270403217 -9.43710199889389 -13.8205720976838 Max fold change at or above threshold 1 13.8205720976838 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779395_at SPBC1289.08.S1 --- 13.8196349023622 --- --- --- --- 10.3867654800415 8.69469928741455 9.64659309387207 5.79907083511353 0.030273400247097 0.0561522990465164 0.0952147990465164 0.149657994508743 P M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1289.08 /DEF=UDP-N-acetylglucosamine diphosphorylase (predicted) --- --- --- --- --- --- SPBC1289.08 // |||UDP-N-acetylglucosamine diphosphorylase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.48763424810441 -1.19460893777847 -13.8196349023622 -1.07672889060073 -1.79110857159208 Max fold change at or above threshold 4 13.8196349023622 Max fold change at or above threshold PAMAAA No 4 0 PMAA 2 1 1 No No x = 1
1771689_at SPAPB1E7.11c.S1 --- 13.8179929793017 --- --- --- --- 1.00774466991425 13.9250087738037 5.16742467880249 3.32272553443909 0.466064006090164 0.004150390625 0.149657994508743 0.219482004642487 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1E7.11c /DEF=sequence orphan --- --- --- --- --- --- SPAPB1E7.11c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 5.08464170484085 13.8179929793017 7.57167044711853 5.12771224008777 3.29718988711876 Max fold change at or above threshold 3 13.8179929793017 Max fold change at or above threshold AAPAAA No 3 0 APAA 3 1 0 No No x = 1
1775715_s_at SPBC11C11.12.S1 --- 13.8100416871609 --- --- --- --- 0.264721840620041 3.65581965446472 0.320673108100891 0.0412127561867237 0.567627012729645 0.432372987270355 0.398925989866257 0.995849609375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11C11.12 /DEF=possible pseudogene --- --- --- --- --- --- SPMIT.06 // |||hypothetical protein|Schizosaccharomyces pombe|chr mitochondrial|||Manual // sanger // 11 // --- /// SPBC11C11.12 // |||possible pseudogene|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.12230980802786 13.8100416871609 3.52727982184478 1.21135871279 -2.64721840620041 Max fold change at or above threshold 1 13.8100416871609 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769846_at SPBC405.02c.S1 --- 13.7621377053814 --- --- --- --- 0.244181856513023 0.403156697750092 1.28048086166382 3.36046433448792 0.979736328125 0.932372987270355 0.725830018520355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC405.02c /DEF=hypothetical protein --- --- --- --- --- --- SPBC405.02c // ||SPBC4C3.01|serine/proline-rich protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.44388365319407 1.65105099742982 4.40327637538265 5.24396398630676 13.7621377053814 Max fold change at or above threshold 1 13.7621377053814 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773407_at SPCC1840.02c.S1 --- 13.7602218294686 --- --- --- --- 0.582188546657562 8.01104354858398 2.56145167350769 3.24670386314392 0.780517995357513 0.194580003619194 0.303710997104645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1840.02c /GEN=bgs4 /DEF=1,3-beta-glucan synthase (subunit) (predicted) --- --- --- --- --- --- D89189 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1055. // gb // 10 // --- /// SPCC1840.02c // |bgs4|orb11, cwg1|1,3-beta-glucan synthase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 6.75603293902239 13.7602218294686 -1.42444452513985 4.39969437429402 5.57672232094528 Max fold change at or above threshold 3 13.7602218294686 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778595_at SPAC56F8.02.S1 --- 13.7478899124634 --- --- --- --- 0.623986721038818 2.00836730003357 0.331304371356964 1.08574092388153 0.753906011581421 0.696289002895355 0.725830018520355 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC56F8.02 /DEF=AMP binding enzyme (predicted) --- --- --- --- --- --- SPAC56F8.02 // |||AMP binding enzyme |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 13.7478899124634 3.21860583297353 7.89844451491867 -1.88342435230504 1.74000645730726 Max fold change at or above threshold 0 13.7478899124634 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776703_at SPBC1271.10c.S1 --- 13.7477259465225 --- --- --- --- 0.366036385297775 0.744686365127563 1.53819060325623 1.46326053142548 0.985840022563934 0.822998046875 0.780517995357513 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1271.10c /DEF=membrane transporter --- --- --- --- --- --- SPBC1271.10c // |||membrane transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.08517813218752 2.03445994725839 13.7477259465225 4.20228880253226 3.99758218089465 Max fold change at or above threshold 0 13.7477259465225 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774215_at SPAC328.09.S1 --- 13.7138071338904 --- --- --- --- 0.894444346427917 12.2662372589111 4.2165961265564 0.944547772407532 0.989257991313934 0.828612983226776 0.753906011581421 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC328.09 /DEF=mitochondrial carrier (predicted) --- --- --- --- --- --- SPAC328.09 // |||mitochondrial carrier|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.11068001769392 13.7138071338904 11.2047178095899 4.71420736616642 1.05601625878648 Max fold change at or above threshold 2 13.7138071338904 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776055_at SPCC1235.07.S1 --- 13.71353662471 --- --- --- --- 2.16178059577942 0.747492849826813 0.353414356708527 0.157638445496559 0.696289002895355 0.932372987270355 0.962401986122131 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1235.07 /DEF=sequence orphan --- --- --- --- --- --- SPCC1235.07 // |fta7|sma7|kinetochore associated protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -7.82465734037471 -2.89204183863469 -9.76721880960619 -6.11684430681552 -13.71353662471 Max fold change at or above threshold 0 13.71353662471 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778779_at SPCC1450.07c.S1 --- 13.7098006703357 --- --- --- --- 9.9432430267334 5.76646757125854 1.92228710651398 1.13997054100037 0.432372987270355 0.432372987270355 0.466064006090164 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1450.07c /DEF=D-amino acid oxidase (predicted) --- --- --- --- --- --- SPCC1450.07c // |||D-amino acid oxidase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -13.7098006703357 -1.72432132910847 -2.7803604409858 -5.17261078901228 -8.72236840261489 Max fold change at or above threshold 2 13.7098006703357 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777550_at SPAC15E1.10.S1 --- 13.7093220337868 --- --- --- --- 0.453126013278961 4.56310176849365 6.21205043792725 0.859021842479706 0.981445014476776 0.696289002895355 0.805419981479645 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15E1.10 /DEF=sequence orphan --- --- --- --- --- --- SPAC15E1.10 // ||SPAP7G5.01|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.65930317738579 10.0702710388963 3.69032383155755 13.7093220337868 1.89576810270405 Max fold change at or above threshold 2 13.7093220337868 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-M10961-4_at AFFX-Sc-M10961-4 --- 13.7043532303669 --- --- --- --- 2.78637027740479 7.07120180130005 8.29559421539307 3.51729130744934 0.567627012729645 0.303710997104645 0.0952147990465164 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL M10961 /FEA=CDS_4 /DB_XREF=AAA88687.1 GI:1197015 /PROD=unknown protein /NOTE=ORF; putative --- --- --- --- --- --- AFFX-Sc-M10961-4 // --- // affx // --- // --- --- No No -13.7043532303669 2.53778252612074 1.24030006629654 2.97720453116502 1.26232013597465 Max fold change at or above threshold 4 13.7043532303669 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774007_at SPCC1919.14c.S1 --- 13.6990683035384 --- --- --- --- 0.314177870750427 0.337528556585312 1.12414026260376 4.30394411087036 0.5 0.822998046875 0.432372987270355 0.358154296875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1919.14c /GEN=bdp1 /DEF=transcription factor TFIIIB complex (predicted) --- --- --- --- --- --- SPCC1919.14c // |bdp1||transcription factor TFIIIB complex |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 5.62205944568709 1.07432313987968 5.39770025972153 3.57803768902852 13.6990683035384 Max fold change at or above threshold 1 13.6990683035384 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774031_x_at SPAPB8E5.05.S1 --- 13.6805368658941 --- --- --- --- 0.286848783493042 1.43709266185761 3.92424535751343 0.153210669755936 0.932372987270355 0.780517995357513 0.303710997104645 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB8E5.05 /GEN=mfm1 /DEF=M-factor precursor (PMID 8196631) --- --- --- --- --- --- SPAPB8E5.05 // |mfm1||M-factor precursor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- AB004296 // gb // 1 // Cross Hyb Matching Probes /// SPBPJ4664.03 // sanger // 1 // Cross Hyb Matching Probes No No 1.04655394965303 5.00993117125234 1.61685791073458 13.6805368658941 -1.87225069866212 Max fold change at or above threshold 1 13.6805368658941 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769794_at SPAC186.04c.S1 --- 13.659042143936 --- --- --- --- 7.41341257095337 4.73203134536743 0.777644157409668 2.96391606330872 0.24609400331974 0.212890625 0.5 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC186.04c /DEF=putative pseudogene, similar to N-terminal of transmembrane channel --- --- --- --- --- --- SPAC186.04c // |||putative pseudogene, similar to N-terminal of transmembrane channel|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -13.659042143936 -1.5666448571206 -2.33827577602983 -9.53316822394376 -2.50122217114257 Max fold change at or above threshold 3 13.659042143936 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777598_at SPCC1223.11.S1 --- 13.658738889592 --- --- --- --- 6.18832635879517 3.21567726135254 0.453067183494568 3.39348936080933 0.219482004642487 0.567627012729645 0.850341975688934 0.49169921875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1223.11 /GEN=ptc2 /DEF=serinethreonine protein phosphatase (PMID 7874201) --- --- --- --- --- --- SPCC1223.11 // |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.82779027588784 -1.92442395671023 -4.50756261308753 -13.658738889592 -1.82358796531464 Max fold change at or above threshold 3 13.658738889592 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770425_at SPBC1861.06c.S1 --- 13.6560407724401 --- --- --- --- 0.267390578985214 3.65149664878845 2.30561900138855 3.03090810775757 0.828612983226776 0.732421875 0.533936023712158 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1861.06c /GEN=B8647-1 /DEF=Pfam-B_8647 domain --- --- --- --- --- --- SPBC1861.06c // |B8647-1||Pfam-B_8647 domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 12.6416472147835 13.6560407724401 2.34669324672745 8.6226635588236 11.3351342416786 Max fold change at or above threshold 2 13.6560407724401 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770100_at SPAC683.02c.S1 --- 13.6488026702341 --- --- --- --- 5.80049276351929 1.13796651363373 1.39272379875183 0.42498180270195 0.665526986122131 0.870360970497131 0.888427972793579 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC683.02c /DEF=zinc finger protein --- --- --- --- --- --- SPAC683.02c // ||SPAC694.01c|zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.31954447486924 -5.09724380640805 -5.09910697097512 -4.16485506222966 -13.6488026702341 Max fold change at or above threshold 1 13.6488026702341 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775776_at SPAC694.04c.S1 --- 13.6298631210867 --- --- --- --- 8.71749687194824 0.70029491186142 7.19453716278076 2.92039132118225 0.00805663969367743 0.466064006090164 0.274170011281967 0.24609400331974 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC694.04c /DEF=metal dependent hydrolase (predicted) --- --- --- --- --- --- SPAC694.04c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -13.6298631210867 -12.4483224485763 -1.03038331540121 -1.21168279136094 -2.98504409622036 Max fold change at or above threshold 3 13.6298631210867 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1771865_at SPAC23C4.03.S1 --- 13.6245845159793 --- --- --- --- 6.28232288360596 1.51098871231079 0.800853848457336 0.461101979017258 0.665526986122131 0.805419981479645 0.870360970497131 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C4.03 /DEF=haspin related kinase --- --- --- --- --- --- SPAC23C4.03 // |||haspin related kinase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -11.9847940773677 -4.15775633028936 -1.7228544701648 -7.84453105358416 -13.6245845159793 Max fold change at or above threshold 1 13.6245845159793 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770895_at SPAC1D4.07c.S1 --- 13.616586588269 --- --- --- --- 0.670267939567566 9.02261638641357 9.1267614364624 3.8623058795929 0.633789002895355 0.303710997104645 0.219482004642487 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1D4.07c /DEF=dubious --- --- --- --- --- --- SPAC1D4.07c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.89427268272859 13.4612083523414 5.07489308800265 13.616586588269 5.76233122844086 Max fold change at or above threshold 3 13.616586588269 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771424_at SPBC26H8.10.S1 --- 13.6126101158747 --- --- --- --- 0.445952087640762 4.55901098251343 2.2699077129364 2.70363879203796 0.696289002895355 0.23876953125 0.194580003619194 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC26H8.10 /GEN=dis3 /DEF=3-5 exoribonuclease (subunit) (predicted) --- --- --- --- --- --- SPBC26H8.10 // |dis3||3'-5' exoribonuclease subunit Dis3 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 9.19992977658086 10.2230959532719 13.6126101158747 5.09002598226411 6.06262167386889 Max fold change at or above threshold 2 13.6126101158747 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770547_at SPAC4F8.07c.S1 --- 13.6116553877362 --- --- --- --- 11.8515434265137 4.25185203552246 2.6819109916687 2.55969476699829 0.567627012729645 0.943848013877869 0.805419981479645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F8.07c /GEN=hxk2 /DEF=hexokinase 2 (PMID 854983) --- --- --- --- --- --- D89198 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1099. // gb // 10 // --- /// X92895 // S.pombe mRNA for hexokinase 2. // gb // 11 // --- /// SPAC4F8.07c // |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.19346135478923 -2.78738378652383 -13.6116553877362 -4.41906665185021 -4.63006120077816 Max fold change at or above threshold 4 13.6116553877362 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772758_at SPBC29A3.18.S1 --- 13.6111287146052 --- --- --- --- 7.02309703826904 8.40264511108398 1.08455693721771 0.598660945892334 0.30322265625 0.274170011281967 0.805419981479645 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A3.18 /GEN=cyt1 /DEF=cytochrome c1 --- --- --- --- --- --- SPBC29A3.18 // |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.42502502970092 1.19643015969988 -13.6111287146052 -6.4755448029182 -11.7313432360295 Max fold change at or above threshold 2 13.6111287146052 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775864_at SPAC644.18c.S1 --- 13.5892793982661 --- --- --- --- 7.3991527557373 11.0577688217163 10.3903131484985 0.544484555721283 0.334473013877869 0.171387001872063 0.129638999700546 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC644.18c /GEN=bet3 /DEF=TRAPP (predicted) --- --- --- --- --- --- SPAC644.18c // |bet3||TRAPP |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -8.44225928797102 1.49446418890894 -1.22020777541031 1.40425714828524 -13.5892793982661 Max fold change at or above threshold 3 13.5892793982661 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-Scv2-r2-Bs-phe-5_at AFFX-Scv2-r2-Bs-phe-5 --- 13.5830218078345 --- --- --- --- 2.53914046287537 6.33361101150513 0.479710400104523 0.347559034824371 0.601073980331421 0.274170011281967 0.696289002895355 0.592041015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2116-2382 of gb:M24537.1 /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. --- --- --- --- --- --- AFFX-Scv2-r2-Bs-phe-5 // --- // affx // --- // --- --- AFFX_control No -13.5830218078345 2.494391745596 -1.4021489495265 -5.29306944840496 -7.3056379160405 Max fold change at or above threshold 2 13.5830218078345 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775419_at SPAC821.05.S1 --- 13.5762151234479 --- --- --- --- 4.51510763168335 1.15614759922028 0.831810593605042 3.42905807495117 0.149657994508743 0.466064006090164 0.466064006090164 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC821.05 /DEF=translation initiation factor --- --- --- --- --- --- SPAC821.05 // |||eukaryotic translation initiation factor eIF3h|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.32533153121699 -3.9053038165096 -13.5762151234479 -5.42804776279058 -1.31671949934754 Max fold change at or above threshold 2 13.5762151234479 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777436_at SPAC869.05c.S1 --- 13.5526007978742 --- --- --- --- 13.3329944610596 3.91024231910706 0.983796000480652 7.34875345230103 0.0561522990465164 0.601073980331421 0.850341975688934 0.219482004642487 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC869.05c /DEF=sulfate transporter activity (predicted) --- --- --- --- --- --- SPAC869.05c // |||sulfate transporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.33051024953113 -3.40976169070368 -4.92015999621327 -13.5526007978742 -1.81432055757494 Max fold change at or above threshold 3 13.5526007978742 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1779480_at SPCC1494.02c.S1 --- 13.5451632853648 --- --- --- --- 5.12442970275879 3.87478542327881 0.526225030422211 0.399303793907166 0.398925989866257 0.601073980331421 0.665526986122131 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1494.02c /GEN=taf13 /DEF=transcription initiation factor activity --- --- --- --- --- --- SPCC1494.02c // |taf13||transcription initiation factor activity|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -13.5451632853648 -1.32250670500937 -4.67218820382806 -9.73809569386553 -12.8334110042295 Max fold change at or above threshold 2 13.5451632853648 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770627_at SPBC119.08.S1 --- 13.539449144142 --- --- --- --- 6.03277063369751 3.68514919281006 2.91613864898682 0.44556987285614 0.828612983226776 0.633789002895355 0.665526986122131 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC119.08 /GEN=pmk1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPBC119.08 // |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -12.6912980997679 -1.63704922597647 -6.11966311381137 -2.06875301892574 -13.539449144142 Max fold change at or above threshold 3 13.539449144142 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779837_at SPCC1281.01.S1 --- 13.4992016683068 --- --- --- --- 0.537114858627319 1.77959215641022 0.590162336826324 1.03492510318756 0.919434010982513 0.753906011581421 0.976073980331421 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1281.01 /GEN=ags1 /DEF=a-1,3-glucan synthase --- --- --- --- --- --- D89202 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1110. // gb // 11 // --- /// AF063305 // Schizosaccharomyces pombe putative alpha-glucan synthase (AGS1) mRNA, partial cds. // gb // 11 // --- /// SPCC1281.01 // |ags1|mok1, SPCC17A7.01, SPCC338.01c|alpha-1,3-glucan synthase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.61267440895268 3.31324320641258 13.4992016683068 1.09876375108031 1.92682270200544 Max fold change at or above threshold 0 13.4992016683068 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773663_at SPAC2F7.14c.S1 --- 13.4921410860035 --- --- --- --- 0.741141319274902 6.05318355560303 9.99958324432373 0.163744106888771 0.904784977436066 0.274170011281967 0.10693359375 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F7.14c /DEF=exosome (RNase complex) (predicted) --- --- --- --- --- --- SPAC2F7.14c // |||exosome |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 2.13974905519319 8.1673810354079 9.65572809637351 13.4921410860035 -4.52621674976278 Max fold change at or above threshold 2 13.4921410860035 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776847_at SPAC22F3.03c.S1 --- 13.4900300047825 --- --- --- --- 4.33431005477905 0.387964218854904 2.6941614151001 0.321297287940979 0.398925989866257 0.850341975688934 0.398925989866257 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F3.03c /GEN=rdh54 /DEF=DEADDEAH box helicase (PMID 14551247) --- --- --- --- --- --- AY293737 // Schizosaccharomyces pombe meiotic recombination factor Rdh54 (rdh54) mRNA, rdh54+ allele, complete cds. // gb // 10 // --- /// SPAC22F3.03c // |rdh54||DEAD/DEAH box helicase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -6.79787804389428 -11.1719324724635 1.17645002198641 -1.6087789062995 -13.4900300047825 Max fold change at or above threshold 2 13.4900300047825 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771273_at SPBC83.19c.S1 --- 13.4895226088618 --- --- --- --- 0.249303176999092 3.36298084259033 1.1382964849472 0.227379187941551 0.932372987270355 0.696289002895355 0.753906011581421 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC83.19c /DEF=dubious --- --- --- --- --- --- SPBC83.19c // |||dubious|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.55734737128756 13.4895226088618 10.0371269086378 4.56591247110882 -1.09642038594656 Max fold change at or above threshold 1 13.4895226088618 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769507_at SPCC126.10.S1 --- 13.4713628530058 --- --- --- --- 6.06437826156616 0.450168132781982 4.00958061218262 2.2116379737854 0.303710997104645 0.888427972793579 0.398925989866257 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC126.10 /GEN=iah1 /DEF=isoamyl acetate hydrolytic enzyme (predicted) --- --- --- --- --- --- AB017605 // Schizosaccharomyces pombe iah1 mRNA for isoamyl acetate hydrolytic enzyme homolog, complete cds. // gb // 11 // --- /// SPCC126.10 // |iah1||isoamyl acetate hydrolytic enzyme Iah1 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.35164650459968 -13.4713628530058 -4.16751049052105 -1.51247196356155 -2.74203026600528 Max fold change at or above threshold 2 13.4713628530058 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774847_at SPCC320.08.S1 --- 13.4632467851055 --- --- --- --- 1.13177454471588 14.834095954895 15.2373600006104 5.75656223297119 0.725830018520355 0.466064006090164 0.194580003619194 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC320.08 /DEF=conserved protein --- --- --- --- --- --- SPCC320.08 // |||conserved protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.53070972201112 13.1069354971391 7.66606491901791 13.4632467851055 5.08631534420692 Max fold change at or above threshold 3 13.4632467851055 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779216_at SPAC6F12.15c.S1 --- 13.4630468889902 --- --- --- --- 0.34166756272316 1.96142566204071 1.23759615421295 0.651825904846191 0.828612983226776 0.870360970497131 0.919434010982513 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F12.15c /GEN=cut9 /DEF=anaphase-promoting complex (APC) --- --- --- --- --- --- SPAC6F12.15c // |cut9|dre1|anaphase-promoting complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.17540789750168 5.74074297954348 13.4630468889902 3.62222314681868 1.90777813278793 Max fold change at or above threshold 0 13.4630468889902 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770932_at SPAC5D6.06c.S1 --- 13.4546664418528 --- --- --- --- 0.502684235572815 5.18411207199097 6.76344871520996 2.31854796409607 0.780517995357513 0.398925989866257 0.24609400331974 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5D6.06c /DEF=related to bacterial glycosyl transferase activity enhancer --- --- --- --- --- --- SPAC5D6.06c // |||related to bacterial glycosyl transferase activity enhancer|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.23535229139087 10.3128598534299 6.95852776297595 13.4546664418528 4.61233474221457 Max fold change at or above threshold 2 13.4546664418528 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775763_at SPBC25B2.08.S1 --- 13.4511174836159 --- --- --- --- 1.05431628227234 14.1817321777344 5.2984881401062 2.06918001174927 0.533936023712158 0.0805663987994194 0.303710997104645 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25B2.08 /DEF=sequence orphan --- --- --- --- --- --- SPBC25B2.08 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.05390884884668 13.4511174836159 7.84855690355062 5.02552054748364 1.9625799644198 Max fold change at or above threshold 2 13.4511174836159 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Bs-phe-M_at AFFX-r2-Bs-phe-M --- 13.4438756641983 --- --- --- --- 2.47935366630554 4.84682178497314 0.639782905578613 0.306146025657654 0.753906011581421 0.567627012729645 0.932372987270355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2484-2875 of gb:M24537.1 /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. --- --- --- --- --- --- AFFX-r2-Bs-phe-M // --- // unknown // --- // --- /// AFFX-r2-Bs-phe-M // B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2484-2875 of gb:M24537.1 /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. // affx // --- // --- /// AFFX-r2-Bs-phe-M // --- // unknown // --- // --- /// AFFX-r2-Bs-phe-M // --- // unknown // --- // --- /// AFFX-r2-Bs-phe-M // --- // gb // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-r2-Bs-phe-M // --- // unknown // --- // --- /// AFFX-r2-Bs-phe-M // B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2484-2875 of gb:M24537.1 /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. // affx // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-phe-M // --- // unknown // --- // --- /// AFFX-r2-Bs-phe-M // --- // affx // --- // --- /// AFFX-r2-Bs-phe-M // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-phe-M // --- // affx // --- // --- /// AFFX-r2-Bs-phe-M // --- // affx // --- // --- /// AFFX-r2-Bs-phe-M // --- // affx // --- // --- /// AFFX-r2-Bs-phe-M // --- // affx // --- // --- /// AFFX-r2-Bs-phe-M // --- // affx // --- // --- /// AFFX-r2-Bs-phe-M // --- // affx // --- // --- /// AFFX-r2-Bs-phe-M // --- // affx // --- // --- /// AFFX-r2-Bs-phe-M // --- // affx // --- // --- /// AFFX-r2-Bs-phe-M // --- // affx // --- // --- /// AFFX-r2-Bs-phe-M // --- // affx // --- // --- /// AFFX-r2-Bs-phe-M // --- // affx // --- // --- 50812173 // gb // 11 // Negative Strand Matching Probes AFFX_control No -13.4438756641983 1.95487309892152 -6.79703569833929 -3.87530464582082 -8.09859824565571 Max fold change at or above threshold 1 13.4438756641983 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774879_at SPBC1604.04.S1 --- 13.4347381637686 --- --- --- --- 2.38845300674438 9.71523857116699 6.72870445251465 3.44690036773682 0.633789002895355 0.0461426004767418 0.0676269978284836 0.111571997404099 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1604.04 /DEF=transporter activity --- --- --- --- --- --- SPBC1604.04 // |||thiamine pyrophosphate transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -13.4347381637686 4.0675862341581 -5.16162868612851 2.81718100942932 1.44315184682455 Max fold change at or above threshold 3 13.4347381637686 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1774212_at SPBC3H7.10.S1 --- 13.4319380809525 --- --- --- --- 0.223609417676926 0.509206533432007 0.690070450305939 0.703101217746735 0.962401986122131 0.932372987270355 0.904784977436066 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3H7.10 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC3H7.10 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.32326667676918 2.27721416531622 13.4319380809525 3.08605271403624 3.14432739484428 Max fold change at or above threshold 0 13.4319380809525 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774574_at SPBC21B10.12.S1 --- 13.4175261121825 --- --- --- --- 7.78302145004272 1.16639089584351 1.59298169612885 0.663441240787506 0.533936023712158 0.828612983226776 0.805419981479645 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21B10.12 /GEN=rec6 /DEF=involved in meiotic recombination (required) (PMID 8005432) --- --- --- --- --- --- SPBC21B10.12 // |rec6||meiotic recombination protein Rec6|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -13.3651318775923 -6.67273851140121 -13.4175261121825 -4.88581976111621 -11.7312897835598 Max fold change at or above threshold 1 13.4175261121825 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774228_at SPAC24C9.04.S1 --- 13.4134754450388 --- --- --- --- 0.30394047498703 0.336094290018082 2.64520978927612 0.254664480686188 0.962401986122131 0.974853515625 0.432372987270355 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24C9.04 /DEF=hypothetical protein --- --- --- --- --- --- SPAC24C9.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 13.4134754450388 1.10578984267371 6.00609929842968 8.7030521005437 -1.19349378510921 Max fold change at or above threshold 1 13.4134754450388 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776032_at SPAC4G9.16c.S1 --- 13.3991019137828 --- --- --- --- 12.3351812362671 0.920597612857819 4.07068777084351 5.23366975784302 0.111571997404099 0.919434010982513 0.665526986122131 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G9.16c /GEN=rpl901 /DEF=60S ribosomal protein L9 --- --- --- --- --- --- SPAC4G9.16c // |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.49888742456004 -13.3991019137828 -6.39492287312034 -3.03024499314794 -2.35688948806561 Max fold change at or above threshold 3 13.3991019137828 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776510_at SPAC12B10.03.S1 --- 13.3893968107262 --- --- --- --- 10.2443504333496 0.765109181404114 3.20434260368347 0.779230535030365 0.171387001872063 0.888427972793579 0.601073980331421 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12B10.03 /DEF=WD repeat protein --- --- --- --- --- --- SPAC12B10.03 // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.33251216143298 -13.3893968107262 -1.61262080041506 -3.19702094949943 -13.1467517927161 Max fold change at or above threshold 2 13.3893968107262 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773661_at SPCC613.06.S1 --- 13.3884137045088 --- --- --- --- 5.76104116439819 0.741337478160858 4.92404699325562 1.25151312351227 0.398925989866257 0.850341975688934 0.194580003619194 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC613.06 /GEN=rpl902 /DEF=60S ribosomal protein L9 --- --- --- --- --- --- SPCC613.06 // |rpl902|rpl9-2|60S ribosomal protein L9|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -13.3884137045088 -7.77114517222363 -5.75434539730274 -1.16998094703178 -4.60326068993213 Max fold change at or above threshold 2 13.3884137045088 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775838_at SPBC4C3.06.S1 --- 13.3849345175027 --- --- --- --- 7.6539626121521 7.26254940032959 9.24322032928467 0.571834146976471 0.366210997104645 0.334473013877869 0.129638999700546 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4C3.06 /DEF=hypothetical protein --- --- --- --- --- --- SPBC4C3.06 // |||FCH domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.71227386528617 -1.05389474002129 -1.01010646204166 1.20763855242895 -13.3849345175027 Max fold change at or above threshold 3 13.3849345175027 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770264_at SPBC17G9.03c.S1 --- 13.3835397848002 --- --- --- --- 9.96233081817627 7.51813888549805 7.59114408493042 0.744371891021729 0.274170011281967 0.274170011281967 0.0676269978284836 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17G9.03c /DEF=lysine-tRNA ligase --- --- --- --- --- --- SPBC17G9.03c // |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.98379994164211 -1.32510598299705 -3.76737322083429 -1.31236223508825 -13.3835397848002 Max fold change at or above threshold 3 13.3835397848002 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779439_at SPCC794.04c.S1 --- 13.3834384123096 --- --- --- --- 0.436011165380478 4.60898590087891 3.44951248168945 3.36807179450989 0.976073980331421 0.567627012729645 0.423828125 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC794.04c /DEF=unknown specificity --- --- --- --- --- --- SPCC794.04c // |||membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 13.3834384123096 10.5707978759144 9.90099006111165 7.91152327183937 7.7247374882494 Max fold change at or above threshold 3 13.3834384123096 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774450_at SPBC577.04.S1 --- 13.3738527059272 --- --- --- --- 3.25241780281067 1.13390970230103 5.11536598205566 0.853990197181702 0.533936023712158 0.780517995357513 0.466064006090164 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC577.04 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC577.04 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -8.83092727662756 -2.86832169811281 -13.3738527059272 1.57278870434022 -3.80849547634639 Max fold change at or above threshold 2 13.3738527059272 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775491_at SPAC11D3.14c.S1 --- 13.3688234471682 --- --- --- --- 0.486637026071548 6.50576448440552 1.05305397510529 1.97294557094574 0.888427972793579 0.366210997104645 0.456298828125 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11D3.14c /DEF=oxoprolinase (predicted) --- --- --- --- --- --- SPAC11D3.14c // |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.8722966600973 13.3688234471682 3.82104926201383 2.16394133345386 4.05424467363826 Max fold change at or above threshold 1 13.3688234471682 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779044_at SPAC23A1.08c.S1 --- 13.3628374992923 --- --- --- --- 0.940141618251801 8.2199649810791 12.5629596710205 2.33521604537964 0.850341975688934 0.366210997104645 0.171387001872063 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23A1.08c /GEN=rpl34 /DEF=60S ribosomal protein L34 --- --- --- --- --- --- SPAC23A1.08c // |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- U97397 // gb // 5 // Cross Hyb Matching Probes No No 3.38223233826957 8.74332634732646 -1.01982736275114 13.3628374992923 2.48389817027991 Max fold change at or above threshold 2 13.3628374992923 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778547_at SPBC30D10.07c.S1 --- 13.3593123590701 --- --- --- --- 0.974053204059601 13.0126810073853 2.78526473045349 0.593968689441681 0.696289002895355 0.366210997104645 0.533936023712158 0.45751953125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30D10.07c /DEF=biotin-protein ligase activity (predicted) --- --- --- --- --- --- SPBC30D10.07c // |||biotin-protein ligase activity |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.41226739777704 13.3593123590701 -2.1451745357235 2.85945851709663 -1.6399066505933 Max fold change at or above threshold 2 13.3593123590701 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777063_at SPAC1805.02c.S1 --- 13.3472988677148 --- --- --- --- 9.54446792602539 4.24035310745239 3.0222225189209 1.48137557506561 0.274170011281967 0.533936023712158 0.696289002895355 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1805.02c /DEF=electron transfer flavoprotein (beta subunit) (predicted) --- --- --- --- --- --- SPAC1805.02c // |||electron transfer flavoprotein beta subunit |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.91673422456932 -2.25086630385829 -13.3472988677148 -3.15809569489718 -6.44297643803304 Max fold change at or above threshold 3 13.3472988677148 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778471_at SPBC16H5.03c.S1 --- 13.3451633563904 --- --- --- --- 7.31125211715698 2.78070163726807 3.69651579856873 0.547857820987701 0.0805663987994194 0.1943359375 0.129638999700546 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16H5.03c /GEN=uba2 /DEF=ubiquitin activating enzyme --- --- --- --- --- --- SPBC16H5.03c // |fub2|uba2|SUMO E1-like activator enzyme|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -12.1922799146697 -2.62928320650036 -2.09387872461748 -1.97787660477141 -13.3451633563904 Max fold change at or above threshold 3 13.3451633563904 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777297_at SPBC1347.04.S1 --- 13.3408556924824 --- --- --- --- 0.428173661231995 5.71220302581787 5.45966958999634 0.635993480682373 0.969726979732513 0.533936023712158 0.171387001872063 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1347.04 /GEN=tim54 /DEF=TIM22 inner membrane protein import complex --- --- --- --- --- --- SPBC1347.04 // |tim54||TIM22 inner membrane protein import complex|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.26026585441463 13.3408556924824 6.33861808389765 12.7510636088336 1.48536338936032 Max fold change at or above threshold 2 13.3408556924824 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770282_at SPCC330.19c.S1 --- 13.3302849435608 --- --- --- --- 4.42053556442261 8.18741130828857 0.478890955448151 0.973101913928986 0.366210997104645 0.01806640625 0.828612983226776 0.725830018520355 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC330.19c /DEF=hypothetical protein --- --- --- --- --- --- SPCC330.19c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.21113693065968 1.85213107981362 -13.3302849435608 -9.23077689008728 -4.54272620487848 Max fold change at or above threshold 2 13.3302849435608 Max fold change at or above threshold AMPAAA No 4 0 APAA 3 1 0 No No x = 1
1774061_x_at SPCC548.03c.S1 --- 13.32998161147 --- --- --- --- 0.279814153909683 0.646593570709229 0.417543977499008 0.37183678150177 0.82275390625 0.943848013877869 0.828612983226776 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC548.03c /GEN=wtf4 /DEF=wtf element --- --- --- --- --- --- SPCC548.03c // |wtf4|SPCC548.03|wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPCC162.04c // |wtf13||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 9 // --- SPCC576.16c // sanger // 1 // Cross Hyb Matching Probes /// SPCC285.07c // sanger // 7 // Cross Hyb Matching Probes No No 13.32998161147 2.31079651145143 1.57366930787661 1.49221893054695 1.32887052461896 Max fold change at or above threshold 0 13.32998161147 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773782_at SPAC630.06c.S1 --- 13.3198542976935 --- --- --- --- 0.270421624183655 0.70153945684433 0.308878362178802 3.6019766330719 0.962401986122131 0.943848013877869 0.981445014476776 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC630.06c /DEF=sequence orphan --- --- --- --- --- --- SPAC630.06c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.69067398557877 2.59424318954569 2.10519907549656 1.14221029147074 13.3198542976935 Max fold change at or above threshold 1 13.3198542976935 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778543_at SPBC20F10.10.S1 --- 13.315482195915 --- --- --- --- 8.06554889678955 4.16574478149414 0.605727136135101 3.34667229652405 0.334473013877869 0.432372987270355 0.780517995357513 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC20F10.10 /DEF=cyclin --- --- --- --- --- --- SPBC20F10.10 // |||cyclin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -10.8866718950277 -1.93616011538197 -7.06524636463476 -13.315482195915 -2.41002051654913 Max fold change at or above threshold 3 13.315482195915 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776593_at SPCC663.17.S1 --- 13.3089211403624 --- --- --- --- 0.380546718835831 4.30062437057495 2.22235798835754 5.06466627120972 0.696289002895355 0.188720703125 0.5 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC663.17 /GEN=wtf15 /DEF=wtf element --- --- --- --- --- --- SPCC663.17 // |wtf15||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 10.2837520378409 11.3011731745617 1.47911982970671 5.83990842216742 13.3089211403624 Max fold change at or above threshold 2 13.3089211403624 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774190_at SPAC27D7.05c.S1 --- 13.3087591090013 --- --- --- --- 0.438348293304443 2.85957884788513 5.83387184143066 0.32312673330307 0.633789002895355 0.6572265625 0.366210997104645 0.6572265625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27D7.05c /GEN=apc14 /DEF=anaphase-promoting complex (APC) (PMID 12477395) --- --- --- --- --- --- SPAC27D7.05c // |apc14|omt1|anaphase-promoting complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.05538657573348 6.52353138261014 4.94912176119867 13.3087591090013 -1.35658318587123 Max fold change at or above threshold 2 13.3087591090013 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774386_at SPBC776.12c.S1 --- 13.2982968469603 --- --- --- --- 6.49469137191772 0.704984307289124 0.488385200500488 0.851321518421173 0.432372987270355 0.888427972793579 0.633789002895355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC776.12c /GEN=hsk1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPBC776.12c // |hsk1||protein kinase Hsk1p|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.34786850727635 -9.21253325040917 -10.1219337963267 -13.2982968469603 -7.62895243616362 Max fold change at or above threshold 1 13.2982968469603 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779443_at SPBC12D12.01.S1 --- 13.2938184369392 --- --- --- --- 12.2992544174194 4.72779655456543 4.36633014678955 0.971078932285309 0.129638999700546 0.633789002895355 0.366210997104645 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12D12.01 /GEN=sad1 /DEF=localization spindle pole body (PMID 7744953) --- --- --- --- --- --- SPBC12D12.01 // |sad1|SPBC16H5.01c|spindle pole body protein Sad1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -13.2938184369392 -2.60147708884439 -3.99024460651351 -2.81684023056817 -12.665555814783 Max fold change at or above threshold 3 13.2938184369392 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772422_at SPAC23C11.02c.S1 --- 13.2902597257989 --- --- --- --- 1.27401280403137 16.9319610595703 16.0198822021484 6.55958032608032 0.567627012729645 0.0805663987994194 0.171387001872063 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C11.02c /GEN=rps23 /DEF=40S ribosomal protein S23 --- --- --- --- --- --- AB001288 // Fission yeast mRNA for ribosomal protein S23 homolog, partial cds. // gb // 11 // --- /// SPAC23C11.02c // |rps23||40S ribosomal protein S23|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.17267657225477 13.2902597257989 -1.0544150993211 12.5743494503796 5.1487554169972 Max fold change at or above threshold 3 13.2902597257989 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777326_at SPCC18.11c.S1 --- 13.2874503918674 --- --- --- --- 0.371213883161545 2.1712052822113 0.644282817840576 1.38502264022827 0.943848013877869 0.725830018520355 0.904784977436066 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18.11c /GEN=sdc1 /DEF=SET1 complex (TAP) (PMID 12488447) --- --- --- --- --- --- SPCC18.11c // |sdc1||Dpy-30 domain protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- SPCC18.10 // sanger // 1 // Negative Strand Matching Probes No No -1.72182684181119 5.84893340658393 13.2874503918674 1.73561078145398 3.73106368876171 Max fold change at or above threshold 0 13.2874503918674 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775539_at YGL262W.S1 Hypothetical protein 13.2849946359565 3.18001914024353 0.859895586967468 --- --- --- --- 0.438141703605652 0.539328098297119 5.82071018218994 1.28164947032928 0.870360970497131 0.8447265625 0.524169921875 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL262W /GEN=COS12 /DB_XREF=GI:6321175 /SEG=NC_001139:+5312,5839 /DEF=Hypothetical ORF /NOTE=Ygl262wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003231 // YGL262W SGDID:S0003231, Chr VII from 5312-5839, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000021492 // cdna:GeneFinder chromosome:SGD1:VII:5312:5839:1 // ensembl // 11 // --- /// YGL262W // cdna:known chromosome:SGD1:VII:5312:5839:1 gene:YGL262W // ensembl // 11 // --- --- No cerevisiae_gene 1.54624327862091 1.23094444984068 2.79827142576901 13.2849946359565 2.92519397213745 Max fold change at or above threshold 1 13.2849946359565 Max fold change at or above threshold -0.617513297172939 -0.578011890153757 1.48374773628404 -0.288222548957345 2.0199573636055 2.5615896325498 1.26814044628027 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778171_at SPAC521.02.S1 --- 13.2810389713566 --- --- --- --- 0.624210357666016 8.29016208648682 1.32016205787659 0.307083398103714 0.870360970497131 0.274170011281967 0.725830018520355 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC521.02 /DEF=metallo peptidase --- --- --- --- --- --- SPAC521.02 // |||metallopeptidase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.91835464621522 13.2810389713566 1.26931905162773 2.11493135553342 -2.03270629907253 Max fold change at or above threshold 1 13.2810389713566 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771681_at SPAC1486.05.S1 --- 13.271087041769 --- --- --- --- 0.183653250336647 0.164912819862366 0.245168432593346 0.496915191411972 0.82275390625 0.989257991313934 0.932372987270355 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1486.05 /GEN=nup189 /DEF=nucleoporin --- --- --- --- --- --- D89145 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0573. // gb // 11 // --- /// SPAC1486.05 // |nup189||nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 13.271087041769 -1.1136384090086 1.47092182964035 1.33495286440037 2.70572500351122 Max fold change at or above threshold 0 13.271087041769 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775442_at SPBC1685.01.S1 --- 13.2589435102876 --- --- --- --- 5.97697448730469 1.06294548511505 3.26269841194153 0.450788140296936 0.533936023712158 0.850341975688934 0.665526986122131 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1685.01 /GEN=pmp1 /DEF=dual-specificity MAP kinase phosphatase (PMID 9427748) --- --- --- --- --- --- SPBC1685.01 // |pmp1||dual-specificity MAP kinase phosphatase Pmp1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -9.52344696820405 -5.62303012807637 -2.82682371964555 -1.83191142197785 -13.2589435102876 Max fold change at or above threshold 2 13.2589435102876 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778083_at SPAC25H1.08c.S1 --- 13.252194064627 --- --- --- --- 4.08336019515991 2.20886325836182 11.9149951934814 0.308127105236053 0.780517995357513 0.665526986122131 0.274170011281967 0.774169921875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25H1.08c /DEF=WD repeat protein --- --- --- --- --- --- SPAC25H1.08c // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.37238526118107 -1.84862516034075 2.86330787896014 2.91793881117922 -13.252194064627 Max fold change at or above threshold 2 13.252194064627 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772702_at SPAC630.13c.S1 --- 13.2425728548108 --- --- --- --- 9.15162086486816 1.52290868759155 1.13662958145142 0.69107574224472 0.0805663987994194 0.665526986122131 0.725830018520355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC630.13c /GEN=tsc2 /DEF=tuberin --- --- --- --- --- --- SPAC630.13c // |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.21306412534487 -6.00930373530225 -2.92786998486053 -8.05154204519473 -13.2425728548108 Max fold change at or above threshold 1 13.2425728548108 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773366_at SPAC17H9.10c.S1 --- 13.2315911081638 --- --- --- --- 0.342451483011246 4.53117799758911 0.711872100830078 2.33251428604126 0.980712890625 0.0805663987994194 0.567627012729645 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17H9.10c /GEN=ddb1 /DEF=XP-E family --- --- --- --- --- --- SPAC17H9.10c // |ddb1||damaged DNA binding 1 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.83083832973697 13.2315911081638 2.19305224673901 2.0787531552512 6.81122553633287 Max fold change at or above threshold 1 13.2315911081638 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769509_at SPBC1271.05c.S1 --- 13.2184367392467 --- --- --- --- 11.8799676895142 2.56442332267761 4.10596179962158 0.898742258548737 0.541015625 0.55908203125 0.533936023712158 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1271.05c /DEF=zinc finger protein --- --- --- --- --- --- SPBC1271.05c // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.48307629162122 -4.63260787891674 -5.07184364272326 -2.8933458880716 -13.2184367392467 Max fold change at or above threshold 3 13.2184367392467 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771888_at SPAPB1E7.10.S1 --- 13.2180064957137 --- --- --- --- 4.84425783157349 2.32410168647766 4.08477687835693 2.33845400810242 0.091552734375 0.601073980331421 0.5 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1E7.10 /GEN=rpc17 /DEF=DNA-directed RNA polymerase III complex (predicted) --- --- --- --- --- --- SPAPB1E7.10 // |rpc17||DNA-directed RNA polymerase III complex subunit Rpc17 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -13.2180064957137 -2.08435709149856 -2.20455715540452 -1.18592960541875 -2.07156429623538 Max fold change at or above threshold 2 13.2180064957137 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778385_at SPAC4F8.10c.S1 --- 13.2174361307158 --- --- --- --- 4.62755727767944 2.34872341156006 7.66155290603638 0.350110054016113 0.149657994508743 0.567627012729645 0.366210997104645 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F8.10c /DEF=calponin homology (CH) domain --- --- --- --- --- --- SPAC4F8.10c // |||calponin homology |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.47648222121116 -1.97024360335632 -4.5765796864837 1.65563653701081 -13.2174361307158 Max fold change at or above threshold 2 13.2174361307158 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772008_at SPAC23E2.02.S1 --- 13.2148493905867 --- --- --- --- 0.757487714290619 10.0100860595703 4.84694528579712 4.30743455886841 0.919434010982513 0.398925989866257 0.466064006090164 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23E2.02 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC23E2.02 // |||oxidoreductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.87335676378119 13.2148493905867 6.04712218992984 6.39871141716964 5.68647448348688 Max fold change at or above threshold 3 13.2148493905867 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772883_at YBL013W.S1 Methionyl-tRNA formyltransferase, catalyzes the formylation of initiator Met-tRNA in mitochondria; potential Cdc28p substrate 13.2029275172835 44.2815847396851 9.79587888717651 FMT1 6413 // translational initiation // inferred from direct assay /// 6431 // methionyl-tRNA aminoacylation // inferred from direct assay 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 4479 // methionyl-tRNA formyltransferase activity // inferred from direct assay 4.37068557739258 30.8573246002197 57.7058448791504 15.2210721969604 0.466064006090164 0.0375977009534836 0.014160200022161 0.030273400247097 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL013W /GEN=FMT1 /DB_XREF=GI:41629674 /SEG=NC_001134:+202021,203226 /DEF=Methionyl-tRNA formyltransferase, catalyzes the formylation of initiator Met-tRNA in mitochondria; potential Cdc28p substrate /NOTE=Fmt1p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 10781559]; go_function: methionyl-tRNA formyltransferase activity [goid GO:0004479] [evidence IDA] [pmid 10781559]; go_process: methionyl-tRNA aminoacylation [goid GO:0006431] [evidence IDA] [pmid 10781559]; go_process: translational initiation [goid GO:0006413] [evidence IDA] [pmid 10781559] --- --- --- --- --- --- S0000109 // FMT1 SGDID:S0000109, Chr II from 202059-203264, Verified ORF // sgd // 11 // --- /// GENSCAN00000021128 // cdna:Genscan chromosome:SGD1:II:202068:203264:1 // ensembl // 11 // --- /// GENEFINDER00000022109 // cdna:GeneFinder chromosome:SGD1:II:202068:203264:1 // ensembl // 11 // --- /// YBL013W // cdna:known chromosome:SGD1:II:202059:203264:1 gene:YBL013W // ensembl // 11 // --- --- No cerevisiae_gene 6.18276777898126 7.060065075335 5.43019806257741 13.2029275172835 3.48253653287064 Max fold change at or above threshold 4 13.2029275172835 Max fold change at or above threshold -0.978942800375344 0.164909841689364 1.32439069655038 -0.5103577378644 27.0387318134308 23.1556391521005 0.856387766699861 APPAPP Called_P_>2EXP 4 0 APPP 1 3 0 Yes Yes 2 < x = 3
1774359_at SPBC30B4.02c.S1 --- 13.2018094556676 --- --- --- --- 0.611299395561218 1.99269258975983 8.07025814056396 4.62412261962891 0.696289002895355 0.633789002895355 0.334473013877869 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30B4.02c /DEF=R3H domain --- --- --- --- --- --- SPBC30B4.02c // |||R3H domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.99763168528118 3.25976535267205 8.39834233985465 13.2018094556676 7.56441549460984 Max fold change at or above threshold 2 13.2018094556676 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773651_at SPCC1183.07.S1 --- 13.1892265719336 --- --- --- --- 3.83986687660217 4.45903396606445 5.45248508453369 0.291136622428894 0.24609400331974 0.533936023712158 0.219482004642487 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1183.07 /DEF=RNA-binding protein --- --- --- --- --- --- SPCC1183.07 // |||RNA-binding protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.58049423571121 1.16124701958683 -1.06048620504674 1.41996721755065 -13.1892265719336 Max fold change at or above threshold 3 13.1892265719336 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777490_at SPAC29B12.12.S1 --- 13.1780613353155 --- --- --- --- 2.36489939689636 0.732795357704163 0.987965166568756 1.18362557888031 0.567627012729645 0.725830018520355 0.601073980331421 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29B12.12 /DEF=zinc finger protein --- --- --- --- --- --- SPAC29B12.12 // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -13.1780613353155 -3.22723032021594 -12.7826333838311 -2.39370726511518 -1.99801308715677 Max fold change at or above threshold 0 13.1780613353155 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776406_at SPCC1529.01.S1 --- 13.1738140151874 --- --- --- --- 8.0674991607666 1.68659508228302 1.92643260955811 2.66633605957031 0.194580003619194 0.665526986122131 0.533936023712158 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1529.01 /DEF=MFS multidrug efflux transporter --- --- --- --- --- --- SPCC1529.01 // ||SPCC794.14|membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.57892224861428 -4.78330527908703 -13.1738140151874 -4.18779204667697 -3.02568730292261 Max fold change at or above threshold 2 13.1738140151874 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769842_at SPAC12G12.16c.S1 --- 13.1694541428513 --- --- --- --- 0.347563087940216 0.741449892520905 4.57721614837646 0.381020367145538 0.901611328125 0.780517995357513 0.296142578125 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12G12.16c /DEF=XP-G family --- --- --- --- --- --- SPAC12G12.16c // ||SPAC18B11.01c|XP-G family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.03763622538743 2.13328146241019 -1.56106386968765 13.1694541428513 1.09626246389858 Max fold change at or above threshold 1 13.1694541428513 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773509_at SPAC4H3.08.S1 --- 13.1584073065381 --- --- --- --- 5.201904296875 0.39532932639122 5.52147102355957 2.37755107879639 0.187744140625 0.962401986122131 0.303710997104645 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4H3.08 /DEF=short chain dehydrogenase (predicted) --- --- --- --- --- --- SPAC4H3.08 // |||short chain dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.82208559939935 -13.1584073065381 -1.0021798813187 1.06143264244145 -2.18792535868816 Max fold change at or above threshold 2 13.1584073065381 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775993_at SPBC3E7.16c.S1 --- 13.1579996213726 --- --- --- --- 0.416226267814636 5.4767050743103 2.10400533676147 2.61852335929871 0.665526986122131 0.334473013877869 0.432372987270355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3E7.16c /GEN=leu3 /DEF=2-isopropylmalate synthase (predicted) --- --- --- --- --- --- SPBC3E7.16c // |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.33214246129021 13.1579996213726 1.4925142321811 5.0549556802563 6.29110549184476 Max fold change at or above threshold 2 13.1579996213726 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775524_at SPAC3G9.01.S1 --- 13.1521153536451 --- --- --- --- 0.587365448474884 7.72509813308716 7.41431093215942 3.15811204910278 0.828612983226776 0.334473013877869 0.171387001872063 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G9.01 /DEF=sequence orphan --- --- --- --- --- --- SPAC3G9.01 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.34184483066729 13.1521153536451 1.4883378996722 12.6229946814389 5.37674127292121 Max fold change at or above threshold 3 13.1521153536451 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775871_at SPCC777.13.S1 --- 13.1434598172099 --- --- --- --- 4.19902086257935 2.36971068382263 3.98964500427246 2.96893954277039 0.633789002895355 0.533936023712158 0.194580003619194 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC777.13 /GEN=vps35 /DEF=retromer complex (predicted) --- --- --- --- --- --- D89178 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1008. // gb // 10 // --- /// SPCC777.13 // |vps35||vacuolar protein sorting-associated protein 35|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -13.1434598172099 -1.77195507082148 -1.41936049045549 -1.05247982165899 -1.41431672894933 Max fold change at or above threshold 3 13.1434598172099 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770266_at SPAC12B10.09.S1 --- 13.131467368799 --- --- --- --- 3.77080059051514 10.1653108596802 11.0604572296143 5.08144617080688 0.366210997104645 0.303710997104645 0.149657994508743 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12B10.09 /DEF=mitochondrial carrier --- --- --- --- --- --- SPAC12B10.09 // |||mitochondrial carrier|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -13.131467368799 2.69579645374233 1.41494348339935 2.93318539766731 1.34757753660813 Max fold change at or above threshold 4 13.131467368799 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777806_at SPBC32H8.05.S1 --- 13.1306497026775 --- --- --- --- 0.206402823328972 0.215627744793892 1.15901482105255 0.11555302888155 0.79931640625 0.985840022563934 0.55859375 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32H8.05 /DEF=conserved fungal protein --- --- --- --- --- --- SPBC32H8.05 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 13.1306497026775 1.04469377557989 1.0917262217648 5.61530507363881 -1.7862173352509 Max fold change at or above threshold 0 13.1306497026775 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774587_at SPAC17A2.07c.S1 --- 13.1237885234345 --- --- --- --- 0.423415184020996 0.40478178858757 5.55681133270264 0.244048818945885 0.828612983226776 0.888427972793579 0.274170011281967 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A2.07c /DEF=sequence orphan --- --- --- --- --- --- SPAC17A2.07c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 7.73440030361523 -1.04603318617284 1.60501809753977 13.1237885234345 -1.73496100431809 Max fold change at or above threshold 1 13.1237885234345 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771225_at SPCC794.11c.S1 --- 13.1107958825275 --- --- --- --- 1.3388819694519 17.5538082122803 8.07998371124268 0.986918807029724 0.665526986122131 0.219482004642487 0.432372987270355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC794.11c /DEF=actin cortical patch component (predicted) --- --- --- --- --- --- D89162 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0660. // gb // 11 // --- /// SPCC794.11c // |||ENTH domain protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.34921964287806 13.1107958825275 -1.32766442965079 6.03487379440203 -1.35662828584802 Max fold change at or above threshold 2 13.1107958825275 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770984_at SPAC6B12.11.S1 --- 13.1083292159922 --- --- --- --- 0.340076863765717 4.45783948898315 1.80818223953247 0.809401094913483 0.962401986122131 0.725830018520355 0.601073980331421 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6B12.11 /DEF=involved in DNA replication (predicted) --- --- --- --- --- --- SPAC6B12.11 // |drc1||DNA replication protein Drc1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.26751917454033 13.1083292159922 3.80018939476926 5.31698104807904 2.38005339719638 Max fold change at or above threshold 1 13.1083292159922 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774449_at SPAC18G6.15.S1 --- 13.1028886740574 --- --- --- --- 2.53729033470154 0.382944464683533 0.476057022809982 0.211708649992943 0.665526986122131 0.991943001747131 0.753906011581421 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18G6.15 /GEN=mal3 /DEF=EB1 domain --- --- --- --- --- --- SPAC18G6.15 // |mal3||EB1 family plus end tracking protein Mal3|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -10.9326663949894 -6.62573967950775 -13.1028886740574 -5.32980339146114 -11.9848212852244 Max fold change at or above threshold 1 13.1028886740574 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778674_at SPAC1B3.07c.S1 --- 13.0952742246265 --- --- --- --- 12.1558485031128 13.9654588699341 8.93103218078613 1.05999088287354 0.274170011281967 0.303710997104645 0.334473013877869 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B3.07c /GEN=vps28 /DEF=localization endosome membrane(predicted) --- --- --- --- --- --- SPAC1B3.07c // |vps28||ESCRT I complex subunit |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.82648564685518 1.14886746625362 -13.0952742246265 -1.36107991294269 -11.4678802426672 Max fold change at or above threshold 3 13.0952742246265 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-AY342347_at AFFX-Sc-AY342347 --- 13.0950107782369 --- --- --- --- 8.27685737609863 0.632061898708344 2.71577835083008 3.62370324134827 0.24609400331974 0.953857004642487 0.567627012729645 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL AY342347 /DEF=Red H-Pelican DsRed.T4 transformation vector, complete sequence. --- --- --- --- --- --- AFFX-Sc-AY342347 // --- // affx // --- // --- --- No No -1.25764630155003 -13.0950107782369 -2.47658902482663 -3.04769252379113 -2.28408807919356 Max fold change at or above threshold 3 13.0950107782369 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777132_at SPAC21E11.05c.S1 --- 13.0893428957576 --- --- --- --- 0.493965655565262 6.18343067169189 3.94356608390808 2.06810212135315 0.725830018520355 0.466064006090164 0.533936023712158 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC21E11.05c /GEN=cyp8 /DEF=cyclophilin --- --- --- --- --- --- SPAC21E11.05c // |cyp8||cyclophilin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.86980861295114 12.5179364233653 13.0893428957576 7.98348233217818 4.18673261602884 Max fold change at or above threshold 2 13.0893428957576 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776462_at SPAC139.02c.S1 --- 13.0881251445139 --- --- --- --- 0.416960269212723 5.45722818374634 4.53273344039917 3.52484607696533 0.943848013877869 0.533936023712158 0.432372987270355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC139.02c /DEF=oxaloacetate transporter (predicted) --- --- --- --- --- --- SPAC139.02c // |oac1||anion transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.38292471551973 13.0881251445139 2.65929118749984 10.8709001194708 8.45367373639871 Max fold change at or above threshold 3 13.0881251445139 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774761_at SPAC6C3.08.S1 --- 13.0816707923825 --- --- --- --- 6.108229637146 11.6177768707275 1.81994330883026 0.989492297172546 0.366210997104645 0.219482004642487 0.665526986122131 0.49169921875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6C3.08 /DEF=gankyrin --- --- --- --- --- --- SPAC6C3.08 // |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -13.0816707923825 1.90198757428442 -5.30061762468976 -3.35627467488092 -6.17309468158583 Max fold change at or above threshold 2 13.0816707923825 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774291_at SPBC354.15.S1 --- 13.0736190786325 --- --- --- --- 3.40877819061279 1.51895475387573 6.04862594604492 4.1233983039856 0.5 0.432372987270355 0.274170011281967 0.029296875 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC354.15 /DEF=fructosyl amino acid oxidase (predicted) --- --- --- --- --- --- SPBC354.15 // |||fructosyl amino acid oxidase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.16152984006377 -2.24416045436181 -13.0736190786325 1.77442638030888 1.20964113046157 Max fold change at or above threshold 3 13.0736190786325 Max fold change at or above threshold APAAAP No 4 0 AAAP 3 1 0 No No x = 1
1776692_at SPAC5H10.13c.S1 --- 13.0661457222842 --- --- --- --- 11.2502450942993 6.6706600189209 1.08183526992798 0.861022472381592 0.334473013877869 0.567627012729645 0.805419981479645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5H10.13c /GEN=gmh2 /DEF=galactosyltransferase --- --- --- --- --- --- SPAC5H10.13c // |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.42453714241673 -1.68652652996686 -1.86826557360849 -10.3992219583008 -13.0661457222842 Max fold change at or above threshold 2 13.0661457222842 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777389_at YNR069C.S1 Protein of unknown function, ORF exhibits genomic organization compatible with a translational readthrough-dependent mode of expression 13.0414790771924 236.548072814941 23.7887020111084 BSC5 --- --- --- 23.7288093566895 163.63737487793 309.458770751953 23.8485946655273 0.00415039015933871 0.00122069998178631 0.000244141003349796 0.014160200022161 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR069C /GEN=BSC5 /DB_XREF=GI:6324397 /SEG=NC_001146:-761120,762589 /DEF=Bypass of Stop Codon transcript encoded by this ORF shows a high level of stop codon bypass /NOTE=Bsc5p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005352 // BSC5 SGDID:S0005352, Chr XIV from 762590-761121, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000020095 // cdna:Genscan chromosome:SGD1:XIV:761121:762590:-1 // ensembl // 10 // --- /// GENEFINDER00000020701 // cdna:GeneFinder chromosome:SGD1:XIV:761121:762590:-1 // ensembl // 10 // --- /// YNR069C // cdna:known chromosome:SGD1:XIV:761121:762590:-1 gene:YNR069C // ensembl // 10 // --- --- No cerevisiae_gene 1.34039537872778 6.89614773409599 3.66579356677623 13.0414790771924 1.00504809605224 Max fold change at or above threshold 4 13.0414790771924 Max fold change at or above threshold -0.779764944795161 0.245190216266251 1.31346213898545 -0.778887410456535 130.168387413025 136.502132811698 1.04865809221847 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1773076_at SPAC1786.03.S1 --- 13.0402067876956 --- --- --- --- 0.478468149900436 4.90011930465698 6.23932361602783 1.30138146877289 0.888427972793579 0.219482004642487 0.219482004642487 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1786.03 /GEN=cut11 /DEF=localization nuclear membrane --- --- --- --- --- --- AF079307 // Schizosaccharomyces pombe nuclear envelope protein Cut11p (cut11+) mRNA, complete cds. // gb // 11 // --- /// SPAC1786.03 // |cut11|SPAC24C9.01|spindle pole body docking protein Cut11 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.58654912039302 10.2412653918064 -1.21290414456885 13.0402067876956 2.7198915310114 Max fold change at or above threshold 2 13.0402067876956 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769856_at SPAC20G4.03c.S1 --- 13.0383789445641 --- --- --- --- 0.385046809911728 1.11089861392975 5.02038621902466 0.239196181297302 0.780517995357513 0.665526986122131 0.432372987270355 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20G4.03c /GEN=hri1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- AF536223 // Schizosaccharomyces pombe eIF2 kinase Hri1p (hri1) mRNA, complete cds. // gb // 10 // --- /// SPAC20G4.03c // |hri1||eIF2alpha kinase family Hri1p|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 2.53608370942259 2.88510016271638 -1.32909727325771 13.0383789445641 -1.60975316505218 Max fold change at or above threshold 1 13.0383789445641 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777045_at SPAC589.11.S1 --- 13.0200095149883 --- --- --- --- 5.05107975006104 0.634648084640503 1.07043778896332 0.387947469949722 0.601073980331421 0.943848013877869 0.870360970497131 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC589.11 /DEF=peptide chain release factor (predicted) --- --- --- --- --- --- SPAC589.11 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -8.27724185367196 -7.95886708288456 -8.48159128691546 -4.71870462920861 -13.0200095149883 Max fold change at or above threshold 1 13.0200095149883 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775111_at SPAC1071.02.S1 --- 13.0192840593203 --- --- --- --- 5.33136892318726 0.779574930667877 1.44826626777649 0.409497857093811 0.334473013877869 0.870360970497131 0.805419981479645 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1071.02 /DEF=involved in DNA repair (predicted) --- --- --- --- --- --- SPAC1071.02 // |||DNA repair protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.96426025905721 -6.8388152484839 -7.25077061022116 -3.6812076907463 -13.0192840593203 Max fold change at or above threshold 1 13.0192840593203 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780123_at SPCC18.10.S1 --- 13.017750614176 --- --- --- --- 0.68164199590683 8.87344551086426 5.83608627319336 1.63878893852234 0.753906011581421 0.219482004642487 0.149657994508743 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18.10 /DEF=pyridoxine-pyridoxal-pyridoxamine kinase --- --- --- --- --- --- SPCC18.10 // |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 6.21040594855481 13.017750614176 -1.07088692346229 8.56180562265572 2.40417836395505 Max fold change at or above threshold 2 13.017750614176 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773287_at SPBC800.13.S1 --- 13.0159198463422 --- --- --- --- 3.24253153800964 8.77808284759521 6.09483861923218 4.77116203308105 0.366210997104645 0.366210997104645 0.334473013877869 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC800.13 /DEF=Histone-foldTFIID-TAFNF-Y (Interpro) --- --- --- --- --- --- SPBC800.13 // |||histone-fold |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -13.0159198463422 2.7071696125995 1.39096906412078 1.87965438355408 1.47143118799385 Max fold change at or above threshold 4 13.0159198463422 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776078_at SPAC19G12.01c.S1 --- 13.0108447413069 --- --- --- --- 12.0163154602051 8.0560302734375 0.92356151342392 3.81065535545349 0.0676269978284836 0.533936023712158 0.533936023712158 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19G12.01c /GEN=cut20 /DEF=anaphase-promoting complex (APC) --- --- --- --- --- --- SPAC19G12.01c // |cut20|lid1, SPAPJ698.04c|anaphase-promoting complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -12.1772649374817 -1.49159263959391 -9.90712965257186 -13.0108447413069 -3.15334616734844 Max fold change at or above threshold 3 13.0108447413069 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778182_at SPAC644.14c.S1 --- 13.0082994813408 --- --- --- --- 0.522808492183685 0.602847993373871 1.51231241226196 0.549237847328186 0.432372987270355 0.870360970497131 0.567627012729645 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC644.14c /GEN=rhp51 /DEF=RecA family --- --- --- --- --- --- SPAC644.14c // |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 13.0082994813408 1.15309525837248 -1.69840405102645 2.89266994486888 1.05055265080739 Max fold change at or above threshold 0 13.0082994813408 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773226_at SPBC31F10.02.S1 --- 13.0069115913757 --- --- --- --- 0.25659453868866 3.33750247955322 1.00332880020142 0.269041061401367 0.888427972793579 0.753906011581421 0.696289002895355 0.916259765625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31F10.02 /DEF=thioesterase superfamily protein --- --- --- --- --- --- SPBC31F10.02 // |||thioesterase superfamily protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.75216239847134 13.0069115913757 2.6528910261741 3.91017207665051 1.0485065768598 Max fold change at or above threshold 1 13.0069115913757 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772197_at SPBC16A3.03c.S1 --- 12.9993270702361 --- --- --- --- 7.37480211257935 5.14595174789429 6.76789999008179 6.98032855987549 0.194580003619194 0.533936023712158 0.5 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16A3.03c /DEF=sequence orphan --- --- --- --- --- --- SPBC16A3.03c // |lyn1||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -12.9993270702361 -1.43312694597206 1.33004269148726 -1.08967362451971 -1.05651217551153 Max fold change at or above threshold 4 12.9993270702361 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778509_at SPCC757.09c.S1 --- 12.9807909068141 --- --- --- --- 4.69416904449463 10.8833427429199 10.4802255630493 0.775173783302307 0.398925989866257 0.334473013877869 0.194580003619194 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC757.09c /GEN=rnc1 /DEF=RNA-binding protein --- --- --- --- --- --- SPCC757.09c // |rnc1||RNA binding protein that supresses calcineurin deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -12.9807909068141 2.31848121355664 -2.1771768537401 2.2326050603867 -6.05563442109338 Max fold change at or above threshold 3 12.9807909068141 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778028_at SPCC777.11.S1 --- 12.9749108666479 --- --- --- --- 4.33054637908936 6.19077825546265 0.781217217445374 1.81928741931915 0.753906011581421 0.633789002895355 0.601073980331421 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC777.11 /DEF=sequence orphan --- --- --- --- --- --- SPCC777.11 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -12.9749108666479 1.429560548146 -7.18799551671058 -5.54333197270088 -2.38035306192026 Max fold change at or above threshold 2 12.9749108666479 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779075_at YPR194C.S1 Oligopeptide transporter; member of the OPT family, with potential orthologs in S. pombe and C. albicans 12.9627750710191 5180.1533203125 459.644729614258 OPT2 6857 // oligopeptide transport // inferred from sequence similarity /// 6857 // oligopeptide transport // inferred from direct assay 5887 // integral to plasma membrane // inferred from curator 15198 // oligopeptide transporter activity // inferred from sequence similarity /// 15198 // oligopeptide transporter activity // inferred from direct assay 450.206665039063 5835.927734375 4524.37890625 469.082794189453 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR194C /GEN=OPT2 /DB_XREF=GI:6325452 /SEG=NC_001148:-924298,926931 /DEF=Oligopeptide transporter; member of the OPT family, with potential orthologs in S. pombe and C. albicans /NOTE=Opt2p; go_component: integral to plasma membrane [goid GO:0005887] [evidence IC] [pmid 9643541]; go_function: oligopeptide transporter activity [goid GO:0015198] [evidence IDA,ISS] [pmid 9643541]; go_process: oligopeptide transport [goid GO:0006857] [evidence IDA,ISS] [pmid 9643541] --- --- --- --- --- S0006398 // span:168-190,200-222,243-262,272-294,334-356,408-430,479-501,557-574,583-605,620-642,730-752,767-789,810-832 // numtm:13 S0006398 // OPT2 SGDID:S0006398, Chr XVI from 926933-924300, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017334 // cdna:Genscan chromosome:SGD1:XVI:924300:926933:-1 // ensembl // 11 // --- /// GENEFINDER00000020823 // cdna:GeneFinder chromosome:SGD1:XVI:924300:926933:-1 // ensembl // 11 // --- /// YPR194C // cdna:known chromosome:SGD1:XVI:924300:926933:-1 gene:YPR194C // ensembl // 11 // --- --- No cerevisiae_gene 2.03463104102852 12.9627750710191 1.39535282868409 10.0495600300752 1.04192769813559 Max fold change at or above threshold 4 12.9627750710191 Max fold change at or above threshold -0.853175655949195 1.08588030920438 0.613674907917315 -0.846379561172495 2819.89902496338 2777.49645503883 0.984963089263418 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774607_at SPBC947.01.S1 --- 12.9481974725599 --- --- --- --- 0.352429211139679 3.30070948600769 4.56332302093506 1.83063650131226 0.828612983226776 0.567627012729645 0.24609400331974 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC947.01 /GEN=sur2 /DEF=AAA family ATPase --- --- --- --- --- --- SPBC947.01 // |sur2||AAA family ATPase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.6386803298628 9.36559564780092 1.86562651314162 12.9481974725599 5.19433816337862 Max fold change at or above threshold 2 12.9481974725599 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778141_at YCL025C.S1 Low-affinity amino acid permease with broad substrate range, involved in uptake of asparagine, glutamine, and other amino acids; expression is regulated by the SPS plasma membrane amino acid sensor system (Ssy1p-Ptr3p-Ssy5p) 12.9370930846736 4834.3984375 428.196151733398 AGP1 6865 // amino acid transport // inferred from direct assay 5886 // plasma membrane // inferred from sequence similarity 5296 // L-proline permease activity // inferred from genetic interaction /// 15171 // amino acid transporter activity // inferred from direct assay 381.619415283203 4937.0458984375 4731.7509765625 474.772888183594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL025C /GEN=AGP1 /DB_XREF=GI:10383766 /SEG=NC_001135:-76131,77918 /DEF=Low-affinity amino acid permease with broad substrate range, involved in uptake of asparagine, glutamine, and other amino acids; expression is regulated by the SPS plasma membrane amino acid sensor system (Ssy1p-Ptr3p-Ssy5p) /NOTE=Agp1p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 10654085]; go_function: amino acid transporter activity [goid GO:0015171] [evidence IDA] [pmid 10654085]; go_process: amino acid transport [goid GO:0006865] [evidence IDA] [pmid 10654085] --- --- --- --- --- S0000530 // span:125-147,157-179,199-221,236-253,265-287,314-336,357-374,403-425,450-472,482-504,525-547,562-581 // numtm:12 S0000530 // AGP1 SGDID:S0000530, Chr III from 77918-76131, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022447 // cdna:Genscan chromosome:SGD1:III:76131:77918:-1 // ensembl // 11 // --- /// GENEFINDER00000023385 // cdna:GeneFinder chromosome:SGD1:III:76131:77918:-1 // ensembl // 11 // --- /// YCL025C // cdna:known chromosome:SGD1:III:76131:77918:-1 gene:YCL025C // ensembl // 11 // --- --- No cerevisiae_gene 7.0655078147335 12.9370930846736 1.55688491835804 12.3991358590889 1.24410045498147 Max fold change at or above threshold 4 12.9370930846736 Max fold change at or above threshold -0.883756245206452 0.905782888840245 0.825135489946874 -0.847162133580667 2631.2972946167 2545.58640070255 0.967426374021097 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773265_at SPAC1F5.11c.S1 --- 12.9226247743225 --- --- --- --- 7.27747535705566 7.33689594268799 10.7961254119873 0.563157677650452 0.398925989866257 0.398925989866257 0.194580003619194 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F5.11c /DEF=phosphatidylinositol kinase (predicted) --- --- --- --- --- --- SPAC1F5.11c // |||phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.89402862957487 1.00816499990958 1.85701375942768 1.48349872480437 -12.9226247743225 Max fold change at or above threshold 3 12.9226247743225 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776026_at SPBC119.03.S1 --- 12.9085828946742 --- --- --- --- 9.12142562866211 3.19218492507935 2.31626844406128 1.97419714927673 0.0952147990465164 0.432372987270355 0.725830018520355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC119.03 /DEF=S-adenosylmethionine-dependent methyltransferase activity (predicted) --- --- --- --- --- --- SPBC119.03 // |||S-adenosylmethionine-dependent methyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -12.9085828946742 -2.85742394088757 -2.29440396313004 -3.93798294495989 -4.6203215479284 Max fold change at or above threshold 2 12.9085828946742 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771003_at SPAC20G4.01.S1 --- 12.8959828090491 --- --- --- --- 0.649061799049377 0.473276406526566 8.37028980255127 0.633612096309662 0.805419981479645 0.696289002895355 0.0952147990465164 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20G4.01 /DEF=CCR4-Not complex --- --- --- --- --- --- SPAC20G4.01 // ||SPAC22F8.13|CCR4-Not complex|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.15058518506074 -1.37142226001275 1.22587265656209 12.8959828090491 -1.0243835350204 Max fold change at or above threshold 1 12.8959828090491 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772544_at SPAC167.04.S1 --- 12.8931564303347 --- --- --- --- 8.58101558685303 1.73628306388855 0.665548086166382 1.06454014778137 0.129638999700546 0.398925989866257 0.398925989866257 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC167.04 /DEF=conserved fungal protein --- --- --- --- --- --- SPAC167.04 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.29772253979522 -4.9421754812462 -7.72600052034185 -12.8931564303347 -8.06077216038952 Max fold change at or above threshold 1 12.8931564303347 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770019_at SPCC330.01c.S1 --- 12.8737308563706 --- --- --- --- 0.492448776960373 6.33965301513672 0.935288727283478 0.322933882474899 0.904784977436066 0.111571997404099 0.633789002895355 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC330.01c /GEN=rhp16 /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPCC330.01c // |rhp16|rad16, SPCC613.13c|DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 5.25740876560223 12.8737308563706 -1.94289783613583 1.89926094051146 -1.52492136528489 Max fold change at or above threshold 1 12.8737308563706 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777160_at SPBC16A3.06.S1 --- 12.8712044660667 --- --- --- --- 16.1138439178467 5.35974884033203 4.06945514678955 1.25192975997925 0.018554700538516 0.334473013877869 0.149657994508743 0.334473013877869 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16A3.06 /DEF=tRNA specific adenosine deaminase (predicted) (PMID 9707437) --- --- --- --- --- --- SPBC16A3.06 // |||tRNA specific adenosine deaminase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.2389428640602 -3.00645504068964 -2.60566222892463 -3.95970549781317 -12.8712044660667 Max fold change at or above threshold 3 12.8712044660667 Max fold change at or above threshold PAAPAA No 4 0 PAAA 3 1 0 No No x = 1
1776328_at SPAC343.17c.S1 --- 12.8672814343746 --- --- --- --- 0.376484960317612 4.84433794021606 0.51813131570816 1.06124377250671 0.989257991313934 0.665526986122131 0.904784977436066 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC343.17c /DEF=WD repeat protein --- --- --- --- --- --- SPAC343.17c // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.36215606132605 12.8672814343746 5.74861492824319 1.37623376846462 2.81882115984507 Max fold change at or above threshold 1 12.8672814343746 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778390_at SPAC25G10.04c.S1 --- 12.8645615109511 --- --- --- --- 9.57574653625488 3.19098019599915 3.96477293968201 3.94920539855957 0.0239257998764515 0.5 0.149657994508743 0.0375977009534836 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25G10.04c /GEN=rec10 /DEF=involved in meiotic recombination (required) (PMID 7586030) --- --- --- --- --- --- SPAC25G10.04c // |rec10||meiotic recombination protein Rec10p |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -12.8645615109511 -3.00087933740891 -8.77426486603512 -2.41520679290726 -2.42472739952891 Max fold change at or above threshold 4 12.8645615109511 Max fold change at or above threshold PAAAAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1770840_at SPCC1919.08c.S1 --- 12.8373466100497 --- --- --- --- 0.323249608278275 0.164006158709526 4.14966726303101 1.07508730888367 0.888427972793579 0.822998046875 0.129638999700546 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1919.08c /GEN=mrpl33 /DEF=mitochondrial ribosomal protein subunit YmL33 --- --- --- --- --- --- AB012388 // Schizosaccharomyces pombe mRNA for mitochondrial ribosomal protein, partial cds. // gb // 9 // --- /// SPCC1919.08c // |mrpl33||mitochondrial ribosomal protein subunit YmL33|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.27111894695199 -1.97096018114044 8.7341575225901 12.8373466100497 3.32587350874115 Max fold change at or above threshold 1 12.8373466100497 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778102_at SPCC1795.04c.S1 --- 12.8174426659618 --- --- --- --- 9.19451999664307 1.34032189846039 3.15611600875854 0.938723862171173 0.625244140625 0.888427972793579 0.665526986122131 0.7470703125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1795.04c /DEF=20S proteasome component (alpha 7) --- --- --- --- --- --- SPCC1795.04c // |||20S proteasome component |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -12.8174426659618 -6.85993417492074 -8.94273542396563 -2.91323892123336 -9.79470147416629 Max fold change at or above threshold 2 12.8174426659618 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773051_at SPCC553.02.S1 --- 12.8144487162668 --- --- --- --- 4.48598575592041 9.00979328155518 3.36815071105957 5.31436967849731 0.533936023712158 0.567627012729645 0.725830018520355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC553.02 /DEF=glutamine-dependent NAD(+) synthetase (predicted) --- --- --- --- --- --- SPCC553.02 // |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -12.8144487162668 2.00843109447337 2.32689873949196 -1.33188391516756 1.18466039966436 Max fold change at or above threshold 4 12.8144487162668 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777239_at YGL258W-A.S1 Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 12.8039604693238 13.8695340156555 5.57527709007263 --- --- --- --- 5.17602920532227 10.6709661483765 17.0681018829346 5.974524974823 0.0561522990465164 0.000244141003349796 0.00805663969367743 0.0461426004767418 M P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL258W-A /GEN=YPS5 /DB_XREF=GI:13129168 /SEG=NC_001139:+9162,9395 /DEF=Hypothetical ORF identified by homology. See FEBS Letters [2000] 487:31-36. /NOTE=Ygl258w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007607 // YGL258W-A SGDID:S0007607, Chr VII from 9162-9395, Uncharacterized ORF // sgd // 11 // --- /// YGL258W-A // cdna:known chromosome:SGD1:VII:9162:9395:1 gene:YGL258W-A // ensembl // 11 // --- --- No cerevisiae_gene -12.8039604693238 2.06161243012385 1.13871221529039 3.29752812549517 1.15426801855748 Max fold change at or above threshold 4 12.8039604693238 Max fold change at or above threshold -0.832016988689138 0.173592872638914 1.34431108935244 -0.685886973302218 9.72240555286407 5.4642830727588 0.56202994650322 MAPAPP No 3 0 MPPP 0 3 1 No No 2 < x = 3
1773700_at SPCC1827.02c.S1 --- 12.7991226286212 --- --- --- --- 0.622506380081177 5.56948661804199 7.96753549575806 2.76051688194275 0.888427972793579 0.111571997404099 0.171387001872063 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1827.02c /DEF=cholinephosphate cytidylyltransferase (predicted) --- --- --- --- --- --- SPCC1827.02c // |||cholinephosphate cytidylyltransferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.37399802985928 8.94687475703577 5.15283833930618 12.7991226286212 4.43451982224306 Max fold change at or above threshold 3 12.7991226286212 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773115_at SPAC7D4.08.S1 --- 12.7973077169271 --- --- --- --- 3.64644813537598 0.628769516944885 0.28493869304657 1.39977896213531 0.129638999700546 0.805419981479645 0.780517995357513 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC7D4.08 /DEF=dubious --- --- --- --- --- --- SPAC7D4.08 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.38940602695941 -5.79933988068255 -10.1180569711264 -12.7973077169271 -2.60501710199548 Max fold change at or above threshold 1 12.7973077169271 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773303_at SPCC970.04c.S1 --- 12.7888057188825 --- --- --- --- 0.4469054043293 5.40419101715088 4.96287155151367 3.67688798904419 0.567627012729645 0.1884765625 0.0375977009534836 0.030273400247097 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC970.04c /GEN=mob2 /DEF=phosphoprotein (predicted) --- --- --- --- --- --- SPCC970.04c // |mob2||Mob1/phocein family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.17174966058506 12.0924718403468 12.7888057188825 11.1049709926014 8.22744131850975 Max fold change at or above threshold 3 12.7888057188825 Max fold change at or above threshold AAAPPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1778890_at SPAC4A8.06c.S1 --- 12.7765462371822 --- --- --- --- 13.2592554092407 2.37535309791565 2.12306261062622 1.03778088092804 0.0952147990465164 0.567627012729645 0.533936023712158 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4A8.06c /DEF=esteraselipase (predicted) --- --- --- --- --- --- SPAC4A8.06c // |||esterase/lipase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.32964723028699 -5.58201448907769 -7.63820045985764 -6.24534356305665 -12.7765462371822 Max fold change at or above threshold 1 12.7765462371822 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777507_at SPAC19B12.03.S1 --- 12.7687766329536 --- --- --- --- 10.6263751983643 1.12148153781891 1.32456457614899 1.10414731502533 0.0461426004767418 0.533936023712158 0.432372987270355 0.466064006090164 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19B12.03 /GEN=bgs3 /DEF=1,3-beta-glucan synthase (subunit) (PMID 12582133) --- --- --- --- --- --- SPAC19B12.03 // |bgs3||1,3-beta-glucan synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -12.7687766329536 -9.47530105491594 -9.65079202853778 -8.02254219213621 -9.62405564344508 Max fold change at or above threshold 1 12.7687766329536 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1778266_at SPCC550.01c.S1 --- 12.7634593184428 --- --- --- --- 2.96074342727661 0.562049210071564 6.40698671340942 2.39214777946472 0.533936023712158 0.932372987270355 0.432372987270355 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC550.01c /DEF=CHCH domain --- --- --- --- --- --- SPCC550.01c // |||CHCH domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.47295951367014 -5.26776548071232 -12.7634593184428 2.16397903796169 -1.23769252581006 Max fold change at or above threshold 2 12.7634593184428 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772069_at SPCC1682.14.S1 --- 12.7624164045459 --- --- --- --- 2.20595455169678 0.369557857513428 9.27352428436279 0.172847718000412 0.334473013877869 0.567627012729645 0.194580003619194 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1682.14 /GEN=rpl1902 /DEF=60S ribosomal protein L19B --- --- --- --- --- --- AB010048 // Schizosaccharomyces pombe mRNA for ribosomal protein L19, partial cds. // gb // 10 // --- /// SPCC1682.14 // |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.49272754312266 -5.96917236867741 -2.83222945100255 4.20386008280623 -12.7624164045459 Max fold change at or above threshold 1 12.7624164045459 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773351_at SPAC22E12.08.S1 --- 12.7624113420085 --- --- --- --- 0.537116169929504 4.52412748336792 6.85489749908447 1.54711401462555 0.870360970497131 0.45751953125 0.194580003619194 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22E12.08 /GEN=rrn10 /DEF=RNA polymerase I upstream activation factor complex --- --- --- --- --- --- SPAC22E12.08 // |rrn10||RNA polymerase I upstream activation factor complex subunit Rrn10|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.35107599180319 8.42299624671829 -3.02950190282802 12.7624113420085 2.88040856194779 Max fold change at or above threshold 2 12.7624113420085 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771524_at SPBC21B10.11.S1 --- 12.7546733491589 --- --- --- --- 9.69161605834961 8.35758304595947 4.59176778793335 1.32820677757263 0.0952147990465164 0.21240234375 0.432372987270355 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21B10.11 /GEN=dpm2 /DEF=dolichol-phosphate mannosyltransferase (regulatory subunit) (predicted) --- --- --- --- --- --- SPBC21B10.11 // |dpm2||dolichol-phosphate mannosyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.77528603319085 -1.159619474321 -12.7546733491589 -2.11065029982964 -7.29676750788876 Max fold change at or above threshold 3 12.7546733491589 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778324_at SPAC1834.04.S1 --- 12.7515649557573 --- --- --- --- 22.7036285400391 2.99843549728394 12.5831146240234 5.08749866485596 0.274170011281967 0.828612983226776 0.633789002895355 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1834.04 /GEN=hht1 /DEF=histone H3 --- --- --- --- --- --- SPAC1834.04 // |hht1||histone H3|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -12.7515649557573 -7.5718248935502 -1.58661051949683 -1.80429323092184 -4.46263085961554 Max fold change at or above threshold 4 12.7515649557573 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775256_at SPAC26A3.07c.S1 --- 12.7374742905198 --- --- --- --- 9.58041763305664 9.25130271911621 11.1360349655151 2.44801378250122 0.366210997104645 0.274170011281967 0.274170011281967 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26A3.07c /GEN=rpl1101 /DEF=60S ribosomal protein L11 --- --- --- --- --- --- AB016005 // Schizosaccharomyces pombe mRNA for ribosomal protein L11 homolog, complete cds. // gb // 11 // --- /// SPAC26A3.07c // |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.3258059391212 -1.0355749805117 -12.7374742905198 1.16237468887483 -3.9135472608606 Max fold change at or above threshold 3 12.7374742905198 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772436_at SPBC1861.05.S1 --- 12.7174302375893 --- --- --- --- 0.468236148357391 1.8214784860611 4.72545576095581 3.35120630264282 0.753906011581421 0.753906011581421 0.601073980331421 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1861.05 /DEF=pfkB family carbohydrate kinase --- --- --- --- --- --- SPBC1861.05 // |||pfkB family carbohydrate kinase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.73040273055269 3.89008514710149 12.7174302375893 10.0920353491141 7.15708583029976 Max fold change at or above threshold 2 12.7174302375893 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777729_at SPBC146.08c.S1 --- 12.7172025858277 --- --- --- --- 2.39338374137878 1.33677089214325 0.267631560564041 1.20850801467896 0.870360970497131 0.969726979732513 0.981445014476776 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC146.08c /DEF=translation initiation factor --- --- --- --- --- --- SPBC146.08c // |||translation initiation factor|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -12.7172025858277 -1.79042179587069 -8.07792844227608 -8.94283071972027 -1.98044507136727 Max fold change at or above threshold 0 12.7172025858277 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777176_at SPAC1805.01c.S1 --- 12.7084121056366 --- --- --- --- 1.23608362674713 15.7086601257324 4.10180711746216 0.910169005393982 0.274170011281967 0.0375977009534836 0.334473013877869 0.753906011581421 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1805.01c /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPAC1805.01c // ||SPAPJ736.02c|serine/threonine protein kinase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.75338395013377 12.7084121056366 1.49792222428713 3.31838965317941 -1.35808143259292 Max fold change at or above threshold 2 12.7084121056366 Max fold change at or above threshold APPAAA No 4 0 APAA 3 1 0 No No x = 1
1771421_at SPAC4G9.10.S1 --- 12.6853816331619 --- --- --- --- 0.477488785982132 6.05712747573853 5.76137018203735 4.36025476455688 0.780517995357513 0.398925989866257 0.194580003619194 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G9.10 /GEN=arg3 /DEF=ornithine carbamoyltransferase (PMID 1313366) --- --- --- --- --- --- SPAC4G9.10 // |arg3||ornithine carbamoyltransferase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 11.9512498700994 12.6853816331619 2.56280601540457 12.0659800840913 9.13163804588292 Max fold change at or above threshold 3 12.6853816331619 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777530_at SPAC12B10.11.S1 --- 12.6853683715806 --- --- --- --- 9.72353744506836 1.43157863616943 2.25530934333801 0.828294456005096 0.334473013877869 0.904784977436066 0.753906011581421 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12B10.11 /GEN=exg2 /DEF=glycosyl hydrolase family 5 --- --- --- --- --- --- SPAC12B10.11 // |exg2||glucan 1,3-beta-glucosidase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.12633721025728 -6.7921783682706 -12.6853683715806 -4.31139855549787 -11.739227969683 Max fold change at or above threshold 1 12.6853683715806 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769883_at SPBC4C3.10c.S1 --- 12.6803152998431 --- --- --- --- 9.5300121307373 8.58928966522217 1.66019284725189 0.751559555530548 0.111571997404099 0.366210997104645 0.633789002895355 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4C3.10c /DEF=20S proteasome component (beta 1) --- --- --- --- --- --- SPBC4C3.10c // |||20S proteasome component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.08188048253324 -1.10952273146918 -1.80250277510919 -5.74030429447536 -12.6803152998431 Max fold change at or above threshold 2 12.6803152998431 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775716_at SPAC11G7.05c.S1 --- 12.6646832194977 --- --- --- --- 12.2343454360962 5.12589120864868 0.96602064371109 2.60514664649963 0.0805663987994194 0.432372987270355 0.432372987270355 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11G7.05c /DEF=malonyl coa-acyl carrier protein transacylase (predicted) --- --- --- --- --- --- SPAC11G7.05c // |||[acyl-carrier protein] S-malonyltransferase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -9.607414294546 -2.38677430676908 -6.70856267088171 -12.6646832194977 -4.69622140179121 Max fold change at or above threshold 3 12.6646832194977 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776201_at SPAC17H9.06c.S1 --- 12.658446849843 --- --- --- --- 0.365721076726913 0.433789074420929 4.62946081161499 2.4276123046875 0.65771484375 0.753906011581421 0.334473013877869 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17H9.06c /DEF=serine-rich protein --- --- --- --- --- --- SPAC17H9.06c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 10.4086802960633 1.18611997510016 9.32999455733552 12.658446849843 6.63787913568956 Max fold change at or above threshold 1 12.658446849843 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779342_at SPAC24B11.11c.S1 --- 12.653748210648 --- --- --- --- 8.74729824066162 6.04757213592529 8.66950988769531 3.1531286239624 0.334473013877869 0.5 0.274170011281967 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24B11.11c /GEN=sid2 /DEF=Sid2p-Mob1p kinase complex --- --- --- --- --- --- SPAC24B11.11c // |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -12.653748210648 -1.44641486600858 1.06992079441731 -1.00897263559001 -2.77416473726634 Max fold change at or above threshold 4 12.653748210648 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771178_at SPAC630.04c.S1 --- 12.6514770587799 --- --- --- --- 3.9974582195282 5.54487609863281 1.56352090835571 2.62306833267212 0.633789002895355 0.5 0.753906011581421 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC630.04c /DEF=dubious --- --- --- --- --- --- SPAC630.04c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.39295341231398 1.38710045086781 -12.6514770587799 -2.55670275860407 -1.52396266987677 Max fold change at or above threshold 3 12.6514770587799 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779587_at SPBC4B4.09.S1 --- 12.6474058567232 --- --- --- --- 1.41689693927765 17.9200706481934 13.0323667526245 2.15500259399414 0.432372987270355 0.219482004642487 0.129638999700546 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4B4.09 /GEN=prp39 /DEF=U1 snRNA-associated protein --- --- --- --- --- --- SPBC4B4.09 // |prp39||U1 snRNA-associated protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.89869880789612 12.6474058567232 6.26500764399986 9.19782264422744 1.52093108133382 Max fold change at or above threshold 2 12.6474058567232 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778480_at SPAC4G8.07c.S1 --- 12.6473469678327 --- --- --- --- 7.8359546661377 8.11344146728516 0.619572997093201 1.30806720256805 0.0561522990465164 0.194580003619194 0.533936023712158 0.274170011281967 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G8.07c /DEF=uridine methyltransferase (predicted) --- --- --- --- --- --- SPAC4G8.07c // |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.231156006772 1.03541199674707 -5.355720224587 -12.6473469678327 -5.99048324944912 Max fold change at or above threshold 2 12.6473469678327 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1777995_at SPAC9E9.01.S1 --- 12.6332411801136 --- --- --- --- 0.451767802238464 5.70729160308838 0.705416440963745 0.231944784522057 0.976073980331421 0.366210997104645 0.850341975688934 0.991943001747131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9E9.01 /DEF=sequence orphan --- --- --- --- --- --- SPAC9E9.01 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.31635645326296 12.6332411801136 3.38723008109079 1.56145798232738 -1.94773856704462 Max fold change at or above threshold 1 12.6332411801136 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771785_at SPBC31F10.15c.S1 --- 12.6322350937269 --- --- --- --- 0.383595407009125 4.84566736221313 0.166410118341446 0.146931082010269 0.919434010982513 0.366210997104645 0.633789002895355 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31F10.15c /GEN=atp15 /DEF=F0-ATPase epsilon subunit --- --- --- --- --- --- SPBC31F10.15c // |atp15||F0-ATPase epsilon subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 7.41350813428236 12.6322350937269 8.94742748338438 -2.30512069117126 -2.61071654656647 Max fold change at or above threshold 1 12.6322350937269 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778694_at SPBC337.09.S1 --- 12.6244512105822 --- --- --- --- 0.422863900661469 3.98301863670349 5.33842468261719 0.597154974937439 0.962401986122131 0.5 0.303710997104645 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC337.09 /GEN=erg28 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC337.09 // |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.02929348300277 9.41915029983174 1.23790231812653 12.6244512105822 1.4121682508328 Max fold change at or above threshold 2 12.6244512105822 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774730_at SPAC222.10c.S1 --- 12.6203031155055 --- --- --- --- 8.23746299743652 1.97962534427643 0.652715146541595 3.12497854232788 0.398925989866257 0.533936023712158 0.696289002895355 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC222.10c /GEN=byr4 /DEF=two-component GAP for GTPase spg1 (PMID 9742395) --- --- --- --- --- --- SPAC222.10c // |byr4||two-component GAP for GTPase spg1 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -4.45485740795336 -4.16112221499538 -4.35028191180645 -12.6203031155055 -2.63600625919825 Max fold change at or above threshold 2 12.6203031155055 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777512_at SPAC9.03c.S1 --- 12.610435337741 --- --- --- --- 0.53554368019104 1.43931722640991 3.91477060317993 1.09356582164764 0.850341975688934 0.5 0.274170011281967 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9.03c /GEN=brr2 /DEF=U4U6 x U5 tri-snRNP complex (predicted) --- --- --- --- --- --- SPAC9.03c // |brr2||U4/U6 x U5 tri-snRNP complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 2.48011982728417 2.68758138625868 12.610435337741 7.30989972990335 2.04197316128825 Max fold change at or above threshold 1 12.610435337741 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769969_at SPBC1271.13.S1 --- 12.5913565604681 --- --- --- --- 0.650161683559418 8.18641757965088 0.760782957077026 1.04560005664825 0.601073980331421 0.334473013877869 0.665526986122131 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1271.13 /GEN=mrpl8 /DEF=mitochondrial ribosomal protein subunit YmL8 --- --- --- --- --- --- SPBC1271.13 // |mrpl8||mitochondrial ribosomal protein subunit L8|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.11446783125959 12.5913565604681 6.5646414347469 1.17014425229121 1.60821543792606 Max fold change at or above threshold 1 12.5913565604681 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774270_at YNL273W.S1 Subunit of a replication-pausing checkpoint complex (Tof1p-Mrc1p-Csm3p) that acts at the stalled replication fork to promote sister chromatid cohesion after DNA damage, facilitating gap repair of damaged DNA; interacts with the MCM helicase 12.5875745247789 33.5731678009033 346.448135375977 TOF1 76 // DNA replication checkpoint // inferred from mutant phenotype /// 76 // DNA replication checkpoint // inferred from physical interaction /// 6265 // DNA topological change // inferred from physical interaction /// 7064 // mitotic sister chromatid cohesion // inferred from genetic interaction /// 7064 // mitotic sister chromatid cohesion // inferred from mutant phenotype 228 // nuclear chromosome // inferred from physical interaction --- 349.454864501953 39.3844451904297 27.761890411377 343.44140625 0.000244141003349796 0.00292969006113708 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL273W /GEN=TOF1 /DB_XREF=GI:6324056 /SEG=NC_001146:+122881,126597 /DEF=topoisomerase I interacting factor 1 /NOTE=Tof1p; go_component: nuclear chromosome [goid GO:0000228] [evidence IPI] [pmid 12944972]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 10028183]; go_process: DNA replication checkpoint [goid GO:0000076] [evidence IMP,IPI] [pmid 12944972]; go_process: DNA topological change [goid GO:0006265] [evidence IPI] [pmid 10028183] --- --- --- --- --- --- S0005217 // TOF1 SGDID:S0005217, Chr XIV from 122881-126597, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020447 // cdna:GeneFinder chromosome:SGD1:XIV:123106:126597:1 // ensembl // 11 // --- /// GENSCAN00000019823 // cdna:Genscan chromosome:SGD1:XIV:124279:126597:1 // ensembl // 11 // --- /// YNL273W // cdna:known chromosome:SGD1:XIV:122881:126597:1 gene:YNL273W // ensembl // 11 // --- --- No cerevisiae_gene -8.83881520167252 -8.87291576185183 -1.19796191566996 -12.5875745247789 -1.0175094154127 Max fold change at or above threshold 4 12.5875745247789 Max fold change at or above threshold 0.882284643388626 -0.833490199289553 -0.897803612809702 0.849009168710629 190.01065158844 180.717429582736 0.951091047117542 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779353_at SPAC17G6.12.S1 --- 12.5847845745358 --- --- --- --- 5.52658796310425 6.22605609893799 4.385085105896 0.439148396253586 0.303710997104645 0.274170011281967 0.334473013877869 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G6.12 /GEN=pcu1 /DEF=cullin 1 --- --- --- --- --- --- SPAC17G6.12 // |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.18663841840813 1.12656419123398 -1.39774387415729 -1.26031486952749 -12.5847845745358 Max fold change at or above threshold 3 12.5847845745358 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770272_at SPBC1347.09.S1 --- 12.5828954108701 --- --- --- --- 2.36963725090027 0.641657054424286 0.188322097063065 0.895248353481293 0.601073980331421 0.753906011581421 0.870360970497131 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1347.09 /DEF=methyltransferase (predicted) --- --- --- --- --- --- SPBC1347.09 // |||hexaprenyldihydroxybenzoate methyltransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.22417393174893 -3.69299649175739 -8.00779349533593 -12.5828954108701 -2.64690489704406 Max fold change at or above threshold 0 12.5828954108701 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776548_at SPBC23G7.10c.S1 --- 12.5776161734263 --- --- --- --- 0.288745254278183 2.89016652107239 3.63172698020935 0.536373138427734 0.753906011581421 0.423828125 0.274170011281967 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23G7.10c /DEF=NADH-dependent flavin oxidoreductase (predicted) --- --- --- --- --- --- SPBC23G7.10c // |||NADH-dependent flavin oxidoreductase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.59234056888847 10.0093992134948 -1.45282686712505 12.5776161734263 1.8575998409691 Max fold change at or above threshold 2 12.5776161734263 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780143_at SPCC14G10.01.S1 --- 12.5321817815424 --- --- --- --- 9.84887504577637 10.5320978164673 0.785886704921722 3.52961349487305 0.0805663987994194 0.149657994508743 0.303710997104645 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC14G10.01 /DEF=dephospho-CoA kinase activity (ISS) --- --- --- --- --- --- SPCC14G10.01 // ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.65986854621164 1.06937064055696 -2.14724656267361 -12.5321817815424 -2.79035510830928 Max fold change at or above threshold 3 12.5321817815424 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1778678_at SPAC23H3.06.S1 --- 12.5276076318228 --- --- --- --- 0.620611846446991 0.798580646514893 7.77478170394897 1.01238536834717 0.805419981479645 0.828612983226776 0.398925989866257 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H3.06 /GEN=apl6 /DEF=AP-3 adaptor complex (predicted) --- --- --- --- --- --- SPAC23H3.06 // |apl6||AP-3 adaptor complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.96958722890657 1.28676345945823 6.18500732654453 12.5276076318228 1.63126980921019 Max fold change at or above threshold 1 12.5276076318228 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780045_at SPBC18H10.11c.S1 --- 12.5269621634936 --- --- --- --- 0.10356830060482 0.179385930299759 1.29739618301392 0.084723174571991 0.919434010982513 0.753906011581421 0.533936023712158 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18H10.11c /DEF=hypothetical protein --- --- --- --- --- --- SPBC18H10.11c // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.20327851068241 1.73205439552621 5.07566250970634 12.5269621634936 -1.0356830060482 Max fold change at or above threshold 0 12.5269621634936 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779164_at SPBC146.06c.S1 --- 12.5259331483974 --- --- --- --- 6.52394342422485 3.43980407714844 0.739174425601959 3.06587147712708 0.398925989866257 0.5 0.850341975688934 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC146.06c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC146.06c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.68749867409644 -1.89660320120125 -12.5259331483974 -8.82598639544647 -2.12792462857517 Max fold change at or above threshold 3 12.5259331483974 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771049_at SPBC19C7.04c.S1 --- 12.5168156769048 --- --- --- --- 0.785227239131927 2.39168930053711 1.97443199157715 1.16346657276154 0.633789002895355 0.601073980331421 0.533936023712158 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C7.04c /DEF=conserved yeast protein --- --- --- --- --- --- SPBC19C7.04c // |||conserved yeast protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 12.5168156769048 3.0458562583503 1.88618276084269 2.51447210843054 1.48169410685212 Max fold change at or above threshold 0 12.5168156769048 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775117_at SPAPB1A10.03.S1 --- 12.5112832336686 --- --- --- --- 0.553636074066162 5.15332078933716 0.825192809104919 4.70065307617188 0.870360970497131 0.567627012729645 0.725830018520355 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1A10.03 /GEN=nxt1 /DEF=p15 --- --- --- --- --- --- SPAPB1A10.03 // |nxt1||Tap cofactor p15|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 12.5112832336686 9.30813765708719 1.29814473252436 1.49049682229758 8.49051081814102 Max fold change at or above threshold 2 12.5112832336686 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773898_at SPBC8D2.06.S1 --- 12.5044090318674 --- --- --- --- 0.48404935002327 0.26758024096489 1.19293296337128 0.542471945285797 0.919434010982513 0.985840022563934 0.753906011581421 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8D2.06 /DEF=isoleucine-tRNA ligase (predicted) --- --- --- --- --- --- SPBC8D2.06 // |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 12.5044090318674 -1.80898764526781 -1.63091048117479 2.46448624156593 1.12069553498981 Max fold change at or above threshold 0 12.5044090318674 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779326_at SPAC3A12.09c.S1 --- 12.502242776688 --- --- --- --- 0.322855204343796 0.268628299236298 2.73986387252808 0.186241686344147 0.870360970497131 0.696289002895355 0.303710997104645 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A12.09c /DEF=urease accessory protein (predicted) --- --- --- --- --- --- SPAC3A12.09c // |||urease accessory protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 12.502242776688 -1.20186594361675 2.43008364177494 8.48635498410768 -1.73352814120899 Max fold change at or above threshold 1 12.502242776688 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-TagJ-5_at AFFX-r2-TagJ-5 --- 12.4908500284551 --- --- --- --- 0.58284729719162 7.28025817871094 5.45923042297363 0.279164165258408 0.753906011581421 0.171387001872063 0.0561522990465164 0.601073980331421 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Clone 76F7, synthetic insert (960 bp)+ poly A tail (21 bp), 5 prime target sequence 1-360 --- --- --- --- --- --- AFFX-r2-TagJ-5 // --- // gb // --- // --- /// AFFX-r2-TagJ-5 // --- // unknown // --- // --- /// AFFX-r2-TagJ-5 // --- // unknown // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-TagJ-5 // --- // unknown // --- // --- /// AFFX-r2-TagJ-5 // --- // affx // --- // --- /// AFFX-r2-TagJ-5 // --- // affx // --- // --- /// AFFX-r2-TagJ-5 // --- // affx // --- // --- /// AFFX-r2-TagJ-5 // --- // affx // --- // --- /// AFFX-r2-TagJ-5 // --- // affx // --- // --- /// AFFX-r2-TagJ-5 // --- // affx // --- // --- /// AFFX-r2-TagJ-5 // --- // affx // --- // --- /// AFFX-r2-TagJ-5 // --- // affx // --- // --- /// AFFX-r2-TagJ-5 // --- // affx // --- // --- /// AFFX-r2-TagJ-5 // --- // affx // --- // --- /// AFFX-r2-TagJ-5 // --- // affx // --- // --- /// AFFX-r2-TagJ-5 // --- // affx // --- // --- AK131415 // gb // 1 // Cross Hyb Matching Probes AFFX_control No 6.09709021424945 12.4908500284551 11.4455389369902 9.36648492543121 -2.08782992133718 Max fold change at or above threshold 2 12.4908500284551 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
AFFX-Scv2-r2-Bs-lys-M_at AFFX-Scv2-r2-Bs-lys-M --- 12.4797623934981 --- --- --- --- 3.45618653297424 2.65483641624451 5.2866644859314 6.32985067367554 0.466064006090164 0.45751953125 0.24609400331974 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 673-1002 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). --- --- --- --- --- --- AFFX-Scv2-r2-Bs-lys-M // --- // affx // --- // --- --- AFFX_control No 1.66167897912136 -1.30184538370289 -12.4797623934981 1.52962359973723 1.83145516403258 Max fold change at or above threshold 4 12.4797623934981 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772994_at SPBC1215.01.S1 --- 12.4751483092597 --- --- --- --- 3.08382725715637 2.44819307327271 0.752436697483063 0.498606443405151 0.567627012729645 0.753906011581421 0.850341975688934 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1215.01 /GEN=shy1 /DEF=SURF-family protein --- --- --- --- --- --- SPBC1215.01 // |shy1||SURF-family protein Shy1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -12.4751483092597 -1.25963400959793 -7.33083460554497 -4.09845408586785 -6.18489250980368 Max fold change at or above threshold 1 12.4751483092597 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771754_at SPBC1773.06c.S1 --- 12.4631083476047 --- --- --- --- 7.88725423812866 20.3885040283203 4.80476713180542 2.74279999732971 0.5 0.194580003619194 0.533936023712158 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1773.06c /DEF=alcohol dehydrogenase (predicted) --- --- --- --- --- --- SPBC1773.06c // |||alcohol dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -12.4631083476047 2.58499389175994 -5.0033946026506 -1.64154765918176 -2.87562135256213 Max fold change at or above threshold 4 12.4631083476047 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774350_at SPAC19D5.07.S1 --- 12.4616551486597 --- --- --- --- 16.3289909362793 4.63581037521362 1.68888700008392 5.87222194671631 0.0461426004767418 0.533936023712158 0.466064006090164 0.002685546875 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19D5.07 /DEF=4-aminobutyrate aminotransferase (GABA transaminase) (predicted) --- --- --- --- --- --- SPAC19D5.07 // |||4-aminobutyrate aminotransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.75528097096439 -3.52235954766093 -12.4616551486597 -9.66849228839341 -2.78071760305489 Max fold change at or above threshold 3 12.4616551486597 Max fold change at or above threshold PPAAAP No 3 0 PAAP 2 2 0 No No 1 < x = 2
1772814_at SPBC19C7.03.S1 --- 12.4606289742998 --- --- --- --- 4.30136013031006 7.84906244277954 0.928682327270508 0.393132507801056 0.466064006090164 0.533936023712158 0.725830018520355 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C7.03 /GEN=cyr1 /DEF=adenylate cyclase activity --- --- --- --- --- --- SPBC19C7.03 // |cyr1|git2|adenylate cyclase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -12.4606289742998 1.82478616181662 -1.49455307622396 -4.63168082777261 -10.9412476581223 Max fold change at or above threshold 2 12.4606289742998 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778616_at SPBC29B5.01.S1 --- 12.4584680815439 --- --- --- --- 0.336759656667709 0.797370553016663 0.456218540668488 4.19550943374634 0.985840022563934 0.916015625 0.919434010982513 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29B5.01 /GEN=atf1 /DEF=transcription factor (PMID 8557039) --- --- --- --- --- --- SPBC29B5.01 // |atf1|mts1, sss1, gad7|transcription factor Atf1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.44055764276452 2.36777338742643 1.11164784727206 1.35473038897486 12.4584680815439 Max fold change at or above threshold 1 12.4584680815439 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779791_at SPBC6B1.08c.S1 --- 12.4569908027703 --- --- --- --- 0.763921022415161 9.51615715026855 7.43308544158936 2.06347417831421 0.932372987270355 0.129638999700546 0.466064006090164 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC6B1.08c /DEF=histone acetyltransferase complex (predicted) --- --- --- --- --- --- SPBC6B1.08c // |||2 OG-Fe|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 3.17508786352059 12.4569908027703 1.64047115008597 9.73017527137742 2.70116166169962 Max fold change at or above threshold 2 12.4569908027703 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777992_at SPCC1739.07.S1 --- 12.4510491087819 --- --- --- --- 3.3807213306427 11.1711626052856 2.80234169960022 1.17365968227386 0.633789002895355 0.0461426004767418 0.601073980331421 0.633789002895355 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1739.07 /DEF=substrate-specific nuclear cofactor for exosome activity (predicted) --- --- --- --- --- --- SPCC1739.07 // |||substrate-specific nuclear cofactor for exosome activity |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -12.4510491087819 3.30437250300128 1.40341019563571 -1.20639154430204 -2.88049541251417 Max fold change at or above threshold 3 12.4510491087819 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1777201_at SPBC21C3.02c.S1 --- 12.4500552258766 --- --- --- --- 3.53163194656372 2.25027632713318 1.09892642498016 4.58823299407959 0.696289002895355 0.753906011581421 0.665526986122131 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21C3.02c /DEF=sequence orphan --- --- --- --- --- --- SPBC21C3.02c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 1.14810550216982 -1.56942145459219 -12.4500552258766 -3.21371100583687 1.29918209584211 Max fold change at or above threshold 2 12.4500552258766 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774784_at SPCP1E11.07c.S1 --- 12.4485373664917 --- --- --- --- 2.73194408416748 2.47911787033081 2.87631702423096 0.219459041953087 0.780517995357513 0.601073980331421 0.466064006090164 0.625732421875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP1E11.07c /GEN=cwf18 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCP1E11.07c // |cwf18||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -1.02912056502549 -1.10198232882043 1.64324729260214 1.05284622803965 -12.4485373664917 Max fold change at or above threshold 2 12.4485373664917 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772303_at SPBC336.05c.S1 --- 12.4338724534503 --- --- --- --- 0.783543527126312 9.74248027801514 5.24763250350952 0.56816041469574 0.665526986122131 0.0676269978284836 0.194580003619194 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC336.05c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC336.05c // |||S-adenosylmethionine-dependent methyltransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 9.3656685211924 12.4338724534503 2.73317856004243 6.69730821816051 -1.37908855819516 Max fold change at or above threshold 2 12.4338724534503 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769360_at SPBP22H7.03.S1 --- 12.4179803722137 --- --- --- --- 3.10101056098938 0.729874849319458 0.249719396233559 0.77526319026947 0.466064006090164 0.9521484375 0.919434010982513 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP22H7.03 /DEF=sequence orphan --- --- --- --- --- --- SPBP22H7.03 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -12.0639240691247 -4.24868806464669 -5.72269174049329 -12.4179803722137 -3.99994556675845 Max fold change at or above threshold 1 12.4179803722137 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774962_at SPAC23A1.11.S1 --- 12.4108609271244 --- --- --- --- 7.00719785690308 0.564602077007294 5.03752422332764 5.15425968170166 0.366210997104645 0.780517995357513 0.696289002895355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23A1.11 /GEN=rpl1602 /DEF=60S ribosomal protein L13L16 --- --- --- --- --- --- SPAC23A1.11 // |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.60217336537219 -12.4108609271244 -5.89408135549168 -1.39100032997446 -1.35949647274847 Max fold change at or above threshold 3 12.4108609271244 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776690_at SPAC2F3.16.S1 --- 12.4017430187704 --- --- --- --- 0.284854471683502 1.14280438423157 1.54306018352509 0.96140992641449 0.753906011581421 0.870360970497131 0.601073980331421 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F3.16 /DEF=zinc finger protein --- --- --- --- --- --- SPAC2F3.16 // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 12.4017430187704 4.01188851794232 1.30189974398758 5.41701232354027 3.37509157125923 Max fold change at or above threshold 0 12.4017430187704 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776598_at SPAC29A4.05.S1 --- 12.3894637176388 --- --- --- --- 5.78640174865723 1.0043089389801 0.661293745040894 1.9932906627655 0.334473013877869 0.870360970497131 0.665526986122131 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29A4.05 /GEN=cam2 /DEF=calmodulin (predicted) --- --- --- --- --- --- SPAC29A4.05 // |cam2||myosin I light chain Cam2|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.94236388226471 -5.76157547152119 -12.3894637176388 -8.75012321233948 -2.90293927360756 Max fold change at or above threshold 1 12.3894637176388 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771784_at SPBC21D10.05c.S1 --- 12.3692084830411 --- --- --- --- 4.11025857925415 1.37290847301483 0.332297623157501 0.55145788192749 0.303710997104645 0.567627012729645 0.8447265625 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21D10.05c /GEN=ucp3 /DEF=GTPase activating protein (predicted) --- --- --- --- --- --- SPBC21D10.05c // |ucp3|soc2|GTPase activating protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.44611307615214 -2.99383291752017 -11.2508982248419 -12.3692084830411 -7.45344062340304 Max fold change at or above threshold 1 12.3692084830411 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772768_at SPAC19B12.07c.S1 --- 12.3638943237859 --- --- --- --- 0.836022317409515 1.4172534942627 10.3364915847778 3.21885538101196 0.753906011581421 0.533936023712158 0.111571997404099 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19B12.07c /DEF=zinc finger protein --- --- --- --- --- --- SPAC19B12.07c // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.05940971790016 1.69523404429462 -3.16189649402596 12.3638943237859 3.85020269672448 Max fold change at or above threshold 2 12.3638943237859 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771786_at SPAC6C3.07.S1 --- 12.3412904444747 --- --- --- --- 10.4576072692871 1.38593828678131 8.86375617980957 0.847367405891418 0.0375977009534836 0.828612983226776 0.0676269978284836 0.601073980331421 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6C3.07 /DEF=sequence orphan --- --- --- --- --- --- SPAC6C3.07 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.44107171534329 -7.54550716220832 -1.83411518035447 -1.17981666656266 -12.3412904444747 Max fold change at or above threshold 2 12.3412904444747 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1774965_at SPAC4F10.02.S1 --- 12.3390797725914 --- --- --- --- 9.70623779296875 4.35756492614746 2.00925207138062 2.93771910667419 0.366210997104645 0.366210997104645 0.753906011581421 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F10.02 /DEF=aspartyl aminopeptidase (predicted) --- --- --- --- --- --- D89276 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1794. // gb // 10 // --- /// SPAC4F10.02 // |||aspartyl aminopeptidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.49540508815858 -2.22744536397535 -12.3390797725914 -4.83077157476778 -3.30400471948362 Max fold change at or above threshold 3 12.3390797725914 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773072_at SPAPB1E7.02c.S1 --- 12.3368738454775 --- --- --- --- 10.4374771118164 0.934746265411377 0.846039056777954 1.4601389169693 0.303710997104645 0.567627012729645 0.665526986122131 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1E7.02c /GEN=mcl1 /DEF=WD repeat protein --- --- --- --- --- --- SPAPB1E7.02c // |mcl1|slr3|DNA polymerase alpha accessory factor Mcl1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.5632956029293 -11.1661073149331 -3.61195939565083 -12.3368738454775 -7.14827677730876 Max fold change at or above threshold 1 12.3368738454775 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778761_at SPAC4H3.12c.S1 --- 12.326714277802 --- --- --- --- 2.37123727798462 0.768143951892853 0.275666534900665 1.50287389755249 0.633789002895355 0.601073980331421 0.932372987270355 0.718505859375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4H3.12c /DEF=dubious --- --- --- --- --- --- SPAC4H3.12c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -3.44768069862602 -3.08696992554773 -12.326714277802 -8.60183220585364 -1.57780189132721 Max fold change at or above threshold 0 12.326714277802 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770731_at SPBC211.01.S1 --- 12.3197351011416 --- --- --- --- 2.93848609924316 0.241879269480705 2.05917382240295 0.429304003715515 0.326171875 0.753906011581421 0.398925989866257 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC211.01 /GEN=rsm10 /DEF=mitochondrial ribosomal protein subunit s10 --- --- --- --- --- --- SPBC211.01 // |rsm10|SPBC23E6.11|mitochondrial ribosomal protein subunit S10|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -12.3197351011416 -12.1485652968601 1.01417495827959 -1.42702187997616 -6.84476751628526 Max fold change at or above threshold 1 12.3197351011416 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779679_s_at YAL063C.S1 Lectin-like protein involved in flocculation, cell wall protein that binds to mannose chains on the surface of other cells, confers floc-forming ability that is chymotrypsin resistant but heat labile; similar to Flo1p /// Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation /// Lectin-like protein involved in flocculation, cell wall protein that binds to mannose chains on the surface of other cells, confers floc-forming ability that is chymotrypsin sensitive and heat resistant; similar to Flo5p 12.3186986677625 10.7371726632118 16.3847737312317 FLO5 /// FLO9 /// FLO1 501 // flocculation (sensu Saccharomyces) // inferred from genetic interaction /// 501 // flocculation (sensu Saccharomyces) // inferred from expression pattern /// 501 // flocculation (sensu Saccharomyces) // inferred from sequence similarity /// 501 // flocculation (sensu Saccharomyces) // inferred from mutant phenotype 9277 // cell wall (sensu Fungi) // traceable author statement /// 9277 // cell wall (sensu Fungi) // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from sequence similarity 5537 // mannose binding // inferred from sequence similarity /// 5537 // mannose binding // inferred from mutant phenotype 17.1809616088867 1.39470589160919 20.0796394348145 15.5885858535767 0.030273400247097 0.567627012729645 0.0805663987994194 0.0561522990465164 P A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL063C /GEN=FLO9 /DB_XREF=GI:6319255 /SEG=NC_001133:-24001,27969 /DEF=Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation /NOTE=Flo9p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence ISS] [pmid 7502576]; go_function: mannose binding [goid GO:0005537] [evidence ISS] [pmid 7502576]; go_process: flocculation (sensu Saccharomyces) [goid GO:0000501] [evidence IEP,ISS] [pmid 7502576] --- --- --- --- --- S0000059 // span:7-29 // numtm:1 /// S0000084 // span:7-26 // numtm:1 /// S0001254 // span:7-26 // numtm:1 S0000059 // FLO9 SGDID:S0000059, Chr I from 27969-24001, reverse complement, Verified ORF // sgd // 11 // --- /// S0000084 // FLO1 SGDID:S0000084, Chr I from 203394-208007, Verified ORF // sgd // 11 // --- /// S0001254 // FLO5 SGDID:S0001254, Chr VIII from 525391-528618, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018194 // cdna:GeneFinder chromosome:SGD1:I:24001:27969:-1 // ensembl // 11 // --- /// GENSCAN00000020323 // cdna:Genscan chromosome:SGD1:I:24001:27969:-1 // ensembl // 11 // --- /// GENEFINDER00000018241 // cdna:GeneFinder chromosome:SGD1:I:203394:208007:1 // ensembl // 11 // --- /// GENSCAN00000020397 // cdna:Genscan chromosome:SGD1:I:203394:208007:1 // ensembl // 11 // --- /// GENSCAN00000016733 // cdna:Genscan chromosome:SGD1:VIII:525505:528618:1 // ensembl // 11 // --- /// GENEFINDER00000020199 // cdna:GeneFinder chromosome:SGD1:VIII:525505:528618:1 // ensembl // 11 // --- /// YAL063C // cdna:known chromosome:SGD1:I:24001:27969:-1 gene:YAL063C // ensembl // 11 // --- /// YAR050W // cdna:known chromosome:SGD1:I:203394:208007:1 gene:YAR050W // ensembl // 11 // --- /// YHR211W // cdna:known chromosome:SGD1:VIII:525391:528618:1 gene:YHR211W // ensembl // 11 // --- GENEFINDER00000018235 // ensembl // 5 // Cross Hyb Matching Probes /// S0002141 // sgd // 2 // Negative Strand Matching Probes /// YAL064W-B // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene 1.75009691630738 -12.3186986677625 -1.43355382261121 1.16871452785439 -1.1021501097192 Max fold change at or above threshold 3 12.3186986677625 Max fold change at or above threshold 0.435032549490565 -1.46208265935029 0.783381511244595 0.24366859861513 13.5609731972218 8.3211897958074 0.61361302576073 PAAAAM No 4 0 PAAM 2 1 1 No No x = 1
1777062_at SPBC1734.12c.S1 --- 12.3080740796805 --- --- --- --- 4.92879199981689 0.701651811599731 3.41746044158936 0.753800809383392 0.5 0.888427972793579 0.567627012729645 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1734.12c /DEF=involved in cell wall biosynthesis (predicted) --- --- --- --- --- --- SPBC1734.12c // |||alpha-1,6-mannosyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.29616503719549 -7.02455536825237 -12.3080740796805 -1.44223820116105 -6.53858677048733 Max fold change at or above threshold 2 12.3080740796805 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771554_at YOL104C.S1 Meiosis-specific telomere protein, required for bouquet formation, effective homolog pairing, ordered cross-over distribution (interference), sister chromatid cohesion at meiotic telomeres, and segregation of small chromosomes 12.3069658291644 7.31389451026917 1.56410524994135 NDJ1 7129 // synapsis // inferred from mutant phenotype /// 7129 // synapsis // inferred from direct assay /// 45141 // telomere clustering // inferred from direct assay /// 45141 // telomere clustering // traceable author statement 784 // nuclear chromosome, telomeric region // inferred from direct assay 42162 // telomeric DNA binding // traceable author statement 2.89312982559204 7.15646076202393 7.4713282585144 0.235080674290657 0.466064006090164 0.334473013877869 0.111571997404099 0.657470703125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL104C /GEN=NDJ1 /DB_XREF=GI:6324468 /SEG=NC_001147:-116395,117453 /DEF=Meiosis-specific telomere protein Ndj1p is required for bouquet formation, effective homologue pairing, ordered cross-over distribution (interference), sister chromatid cohesion at meiotic telomeres and segregation of small chromosomes. /NOTE=Ndj1p; go_component: nuclear chromosome, telomeric region [goid GO:0000784] [evidence IDA] [pmid 9157883]; go_function: telomeric DNA binding [goid GO:0042162] [evidence TAS] [pmid 12734403]; go_process: synapsis [goid GO:0007129] [evidence IDA,IMP] [pmid 9157883]; go_process: telomere clustering [goid GO:0045141] [evidence IDA,TAS] [pmid 12734403] --- --- --- --- --- --- S0005464 // NDJ1 SGDID:S0005464, Chr XV from 117453-116395, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017381 // cdna:Genscan chromosome:SGD1:XV:116395:117453:-1 // ensembl // 11 // --- /// YOL104C // cdna:known chromosome:SGD1:XV:116395:117453:-1 gene:YOL104C // ensembl // 11 // --- GENEFINDER00000022775 // ensembl // 3 // Cross Hyb Matching Probes No cerevisiae_gene 1.27536538706545 2.47360512436024 -10.0685775295067 2.58243795090858 -12.3069658291644 Max fold change at or above threshold 3 12.3069658291644 Max fold change at or above threshold -0.442326018370385 0.777558015608798 0.867652319221362 -1.20288431645978 4.43899988010526 3.49486575582531 0.787309270155339 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771338_at SPBC8D2.17.S1 --- 12.3019158064408 --- --- --- --- 1.07414937019348 7.72534561157227 13.2140951156616 6.7829532623291 0.753906011581421 0.334473013877869 0.466064006090164 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8D2.17 /DEF=galactosyltransferase --- --- --- --- --- --- SPBC8D2.17 // |||alpha-1,2-galactosyltransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.66507402710891 7.19205896865232 6.74550269470973 12.3019158064408 6.31472069951251 Max fold change at or above threshold 3 12.3019158064408 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770295_at SPCC1739.13.S1 --- 12.2899464440855 --- --- --- --- 19.5682964324951 1.59221982955933 12.4287405014038 2.69019818305969 0.0375977009534836 0.366210997104645 0.149657994508743 0.24609400331974 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1739.13 /GEN=ssa2 /DEF=heat shock protein 70 family --- --- --- --- --- --- AB012387 // Schizosaccharomyces pombe mRNA for heat shock protein, complete cds. // gb // 11 // --- /// SPCC1739.13 // |ssa2||heat shock protein 70 family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.17899103869654 -12.2899464440855 -1.75199313234713 -1.57443921451936 -7.27392374127587 Max fold change at or above threshold 3 12.2899464440855 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1770568_at SPCC320.11c.S1 --- 12.2827406663803 --- --- --- --- 3.20121240615845 0.532551825046539 0.626601457595825 0.260626882314682 0.696289002895355 0.916015625 0.932372987270355 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC320.11c /DEF=involved in ribosome biogenesis and assembly (predicted) --- --- --- --- --- --- SPCC320.11c // ||SPCC330.18|RNA binding protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -6.77755483507203 -6.01108146775893 -9.97153437336094 -5.10884928107415 -12.2827406663803 Max fold change at or above threshold 1 12.2827406663803 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770225_at SPAC1486.02c.S1 --- 12.277555369054 --- --- --- --- 0.248395055532455 3.04968404769897 0.796624720096588 0.453345835208893 0.953857004642487 0.753906011581421 0.888427972793579 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1486.02c /DEF=UBA domain --- --- --- --- --- --- SPAC1486.02c // |||UBA domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.37787251882666 12.277555369054 3.72113565425738 3.20708767084335 1.82510007792671 Max fold change at or above threshold 1 12.277555369054 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774441_at SPAC23D3.07.S1 --- 12.2761605019464 --- --- --- --- 0.279464036226273 2.06248188018799 0.948056697845459 0.510614693164825 0.850341975688934 0.466064006090164 0.633789002895355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23D3.07 /DEF=20S proteasome component (beta 2) --- --- --- --- --- --- AB000540 // Schizosaccharomyces pombe mRNA for proteasome component PUP1 precursor, partial cds. // gb // 11 // --- /// SPAC23D3.07 // |||20S proteasome component |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 12.2761605019464 7.38013344414043 1.41606943267098 3.39241038184194 1.82712129997077 Max fold change at or above threshold 0 12.2761605019464 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770004_at SPBC11B10.05c.S1 --- 12.2746913059254 --- --- --- --- 0.798016667366028 9.79540824890137 5.21612739562988 0.678178787231445 0.850341975688934 0.398925989866257 0.633789002895355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11B10.05c /GEN=rsp1 /DEF=DNAJ domain protein --- --- --- --- --- --- SPBC11B10.05c // |rsp1||randon septum position protein Rsp1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.65166114974211 12.2746913059254 5.04740591513701 6.53636397451006 -1.17670543872922 Max fold change at or above threshold 2 12.2746913059254 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771563_at SPCC970.03.S1 --- 12.2723105273043 --- --- --- --- 0.803236424922943 9.85756683349609 5.81047487258911 3.73012638092041 0.466064006090164 0.149657994508743 0.092041015625 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC970.03 /DEF=cytochrome b5 reductase (predicted) --- --- --- --- --- --- SPCC970.03 // |||cytochrome b5 reductase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.976453745309 12.2723105273043 9.16477688489471 7.2338289105185 4.64387105113946 Max fold change at or above threshold 3 12.2723105273043 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776899_at SPBC887.08.S1 --- 12.268911162588 --- --- --- --- 0.401865363121033 4.93045043945313 2.61909151077271 0.883546769618988 0.850341975688934 0.219482004642487 0.432372987270355 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC887.08 /DEF=dubious --- --- --- --- --- --- SPBC887.08 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.45888698280369 12.268911162588 6.69960496468354 6.51733578239211 2.1986138908739 Max fold change at or above threshold 2 12.268911162588 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775894_at SPAC17A2.04c.S1 --- 12.2413228765038 --- --- --- --- 0.430195569992065 1.95218169689178 5.26616287231445 0.522758662700653 0.828612983226776 0.567627012729645 0.432372987270355 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A2.04c /DEF=TPR repeat protein --- --- --- --- --- --- SPAC17A2.04c // |||TPR repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.78422896399909 4.53789353741553 1.34191111473195 12.2413228765038 1.21516514619222 Max fold change at or above threshold 1 12.2413228765038 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775232_at SPAPYUG7.02c.S1 --- 12.2283902966452 --- --- --- --- 11.248251914978 1.32902264595032 1.33688592910767 0.919847309589386 0.398925989866257 0.7744140625 0.943848013877869 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPYUG7.02c /GEN=sin1 /DEF=stress activated map kinase interacting protein --- --- --- --- --- --- SPAPYUG7.02c // |sin1||stress activated map kinase interacting protein Sin1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.76646492397969 -8.46355173047858 -2.21638440979177 -8.41377089104821 -12.2283902966452 Max fold change at or above threshold 1 12.2283902966452 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778866_at SPCP25A2.02c.S1 --- 12.2254247513411 --- --- --- --- 3.36812090873718 12.1566877365112 0.400600016117096 0.991691529750824 0.567627012729645 0.0952147990465164 0.780517995357513 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP25A2.02c /GEN=rhp26 /DEF=involved in nucleotide-excision repair --- --- --- --- --- --- SPCP25A2.02c // |rhp26||SNF2 family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -12.2254247513411 3.60933828265363 1.39149282543693 -8.40769039747786 -3.39633929270674 Max fold change at or above threshold 2 12.2254247513411 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775980_at SPBP22H7.06.S1 --- 12.2092082735707 --- --- --- --- 0.349324107170105 4.26497077941895 2.84271144866943 0.334841400384903 0.774169921875 0.432372987270355 0.466064006090164 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP22H7.06 /DEF=nicotinamide riboside kinase (predicted) (ISS) --- --- --- --- --- --- SPBP22H7.06 // |||nicotinamide riboside kinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.57197331506926 12.2092082735707 2.14980430618532 8.13774769711259 -1.04325243762735 Max fold change at or above threshold 2 12.2092082735707 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777794_at SPBC8D2.13.S1 --- 12.2067566394076 --- --- --- --- 1.76996874809265 2.63887810707092 0.723905086517334 0.144999101758003 0.665526986122131 0.633789002895355 0.805419981479645 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8D2.13 /DEF=involved in snoRNP biogenesis (PMID 12228251) (predicted) --- --- --- --- --- --- SPBC8D2.13 // |||SHQ1 family protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.58844845629326 1.4909179102256 2.61892912606464 -2.44502874901442 -12.2067566394076 Max fold change at or above threshold 1 12.2067566394076 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771420_at SPBP4H10.04.S1 --- 12.2063672730669 --- --- --- --- 2.03185176849365 20.0131225585938 24.8015289306641 9.23106479644775 0.55908203125 0.149657994508743 0.171387001872063 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP4H10.04 /GEN=ppb1 /DEF=serinethreonine protein phosphatase (catalytic subunit) --- --- --- --- --- --- SPBP4H10.04 // |ppb1||serine/threonine protein phosphatase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.79312112218858 9.8496961584116 3.20787791514965 12.2063672730669 4.54317826703045 Max fold change at or above threshold 3 12.2063672730669 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772598_at SPBPJ4664.03.S1 --- 12.2009482078154 --- --- --- --- 7.28761100769043 8.21446132659912 4.68066835403442 11.4178676605225 0.194580003619194 0.219482004642487 0.398925989866257 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPJ4664.03 /GEN=mfm3 /DEF=M-factor precursor (PMID 8196631) --- --- --- --- --- --- AB004296 // Schizosaccharomyces pombe mRNA for Mfm3, complete cds. // gb // 11 // --- /// SPBPJ4664.03 // |mfm3||M-factor precursor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.91175917622584 1.12718163989963 -12.2009482078154 -1.55695948878946 1.56675042733119 Max fold change at or above threshold 4 12.2009482078154 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777839_at SPBC887.06c.S1 --- 12.1958691539698 --- --- --- --- 6.14786815643311 1.2923868894577 4.30726385116577 2.06070184707642 0.24609400331974 0.725830018520355 0.533936023712158 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC887.06c /GEN=grd19 /DEF=phosphoinositide binding (predicted) --- --- --- --- --- --- SPBC887.06c // |grd19||PX domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.79143010688657 -4.75698740569305 -12.1958691539698 -1.42732564543711 -2.98338557087008 Max fold change at or above threshold 2 12.1958691539698 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778422_at SPAC589.06c.S1 --- 12.1888814237247 --- --- --- --- 5.91708993911743 1.06028425693512 1.09598708152771 1.06613552570343 0.274170011281967 0.601073980331421 0.398925989866257 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC589.06c /DEF=localization membrane (predicted) --- --- --- --- --- --- SPAC589.06c // |||membrane protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -12.1888814237247 -5.58066377050764 -4.98730750302387 -5.39886832504406 -5.55003542838831 Max fold change at or above threshold 1 12.1888814237247 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776629_at SPCC330.11.S1 --- 12.1837038703781 --- --- --- --- 3.12415099143982 1.34240531921387 0.564460337162018 1.611447930336 0.0676269978284836 0.828612983226776 0.780517995357513 0.39013671875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC330.11 /DEF=BTB domain --- --- --- --- --- --- SPCC330.11 // |btb1||BTB/POZ domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -8.45604806154164 -2.32727846554524 -12.1837038703781 -5.53475733502794 -1.93872289177126 Max fold change at or above threshold 1 12.1837038703781 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779995_at SPBC119.05c.S1 --- 12.1817239758918 --- --- --- --- 0.538950383663177 3.62896680831909 3.25694751739502 2.35570669174194 0.888427972793579 0.805419981479645 0.753906011581421 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC119.05c /GEN=csh3 /DEF=src (SH3) homology domain --- --- --- --- --- --- AB011825 // Schizosaccharomyces pombe mRNA for CSH3, complete cds. // gb // 11 // --- /// SPBC119.05c // |csh3||src |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 12.1817239758918 6.73339683637196 3.96319522251887 6.04313052948949 4.37091569678549 Max fold change at or above threshold 2 12.1817239758918 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771059_at SPAC17H9.12c.S1 --- 12.1775106197112 --- --- --- --- 0.959733843803406 11.6871690750122 9.7054443359375 4.86336803436279 0.4912109375 0.0107421996071935 0.0239257998764515 0.0805663987994194 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17H9.12c /DEF=NADH-cytochrome reductase (predicted) --- --- --- --- --- --- SPAC17H9.12c // |||NADH-cytochrome reductase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.04795952119725 12.1775106197112 6.5226876579573 10.1126415397367 5.0674132893859 Max fold change at or above threshold 3 12.1775106197112 Max fold change at or above threshold AAPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1770146_at SPAC29A4.15.S1 --- 12.1747068533961 --- --- --- --- 1.02948570251465 2.71242094039917 12.5336866378784 6.77433300018311 0.850341975688934 0.567627012729645 0.366210997104645 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29A4.15 /DEF=serine-tRNA ligase --- --- --- --- --- --- SPAC29A4.15 // |||serine-tRNA ligase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.42401903113866 2.63473395868805 6.31184147387572 12.1747068533961 6.58030799615375 Max fold change at or above threshold 3 12.1747068533961 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769964_at SPCC330.10.S1 --- 12.1689289583347 --- --- --- --- 8.90941047668457 2.77909064292908 4.37921619415283 6.22934818267822 0.129638999700546 0.5 0.219482004642487 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC330.10 /GEN=pcm1 /DEF=mRNA capping methyltransferase --- --- --- --- --- --- SPCC330.10 // |pcm1||mRNA capping methyltransferase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -12.1689289583347 -3.2058725753883 -1.26766068269614 -2.03447605271932 -1.43023157727139 Max fold change at or above threshold 4 12.1689289583347 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776271_at SPAC824.09c.S1 --- 12.1676696589848 --- --- --- --- 5.64145612716675 8.98987007141113 4.39780330657959 0.560304999351501 0.274170011281967 0.334473013877869 0.533936023712158 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC824.09c /DEF=GTPase activating protein (predicted) --- --- --- --- --- --- SPAC824.09c // |||GTPase activating protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.10637528166491 1.59353717706319 -12.1676696589848 -1.28278955057552 -10.068545049029 Max fold change at or above threshold 3 12.1676696589848 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775743_at SPAC20G8.03.S1 --- 12.1560706753097 --- --- --- --- 0.623562633991241 4.55791664123535 0.590920090675354 1.78661024570465 0.725830018520355 0.171387001872063 0.665526986122131 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20G8.03 /GEN=itr2 /DEF=MFS myo-inositol transporter --- --- --- --- --- --- D89252 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1625. // gb // 9 // --- /// SPAC20G8.03 // |itr2||MFS myo-inositol transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 12.1560706753097 7.30947685569526 7.12973456851193 -1.05524019885427 2.86516565989383 Max fold change at or above threshold 1 12.1560706753097 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778661_at SPBC3D6.03c.S1 --- 12.1528364244333 --- --- --- --- 3.35339212417603 10.610710144043 6.93480062484741 7.95358800888062 0.303710997104645 0.171387001872063 0.219482004642487 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3D6.03c /DEF=ribonuclease (predicted) --- --- --- --- --- --- SPBC3D6.03c // |||ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -12.1528364244333 3.16417220269167 1.93661893022653 2.06799573925504 2.37180374807343 Max fold change at or above threshold 4 12.1528364244333 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1779757_at SPCC16A11.15c.S1 --- 12.1438968886462 --- --- --- --- 8.59124946594238 10.1466207504272 7.33724594116211 0.938561081886292 0.274170011281967 0.274170011281967 0.334473013877869 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16A11.15c /DEF=sequence orphan --- --- --- --- --- --- SPCC16A11.15c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -12.1438968886462 1.18104133637962 -1.52925536000763 -1.17090929414609 -9.15363915226055 Max fold change at or above threshold 3 12.1438968886462 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777460_at SPBC25H2.16c.S1 --- 12.1415295682047 --- --- --- --- 0.613465189933777 7.44840574264526 1.58665287494659 0.680899441242218 0.989257991313934 0.5 0.919434010982513 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25H2.16c /DEF=VHS domain --- --- --- --- --- --- SPBC25H2.16c // |||VHS domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.45348349585201 12.1415295682047 1.90972750532974 2.5863780064161 1.10992351712038 Max fold change at or above threshold 1 12.1415295682047 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776710_at SPBC409.07c.S1 --- 12.1400309773502 --- --- --- --- 0.914080202579498 0.418014407157898 3.55952405929565 4.02120351791382 0.753906011581421 0.753906011581421 0.49169921875 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC409.07c /GEN=wis1 /DEF=serinethreonine protein kinase (PMID 1756736) --- --- --- --- --- --- SPBC409.07c // |wis1|spc2, smf2|MAP kinase kinase Wis1 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 12.1400309773502 -2.18671937360814 1.09505995838083 3.89410475060155 4.39918018852847 Max fold change at or above threshold 2 12.1400309773502 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779693_at SPAC13G6.05c.S1 --- 12.1396607219769 --- --- --- --- 0.762792110443115 2.05074548721313 9.26003742218018 0.974039316177368 0.953857004642487 0.753906011581421 0.24609400331974 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G6.05c /DEF=TRAPP (predicted) --- --- --- --- --- --- SPAC13G6.05c // |||TRAPP |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.73998619108315 2.68847233621993 3.5428076422259 12.1396607219769 1.27693942142576 Max fold change at or above threshold 1 12.1396607219769 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770985_at SPCC285.17.S1 --- 12.1386475532828 --- --- --- --- 15.5841760635376 5.61616992950439 2.98918294906616 1.28384780883789 0.432372987270355 0.601073980331421 0.805419981479645 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC285.17 /GEN=spp27 /DEF=transcription factor --- --- --- --- --- --- SPCC285.17 // |spp27|uaf30|RNA polymerase I transcription factor|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -6.1543047235548 -2.77487616278606 -2.16519596905453 -5.21352367154583 -12.1386475532828 Max fold change at or above threshold 3 12.1386475532828 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773871_at SPAC20G4.08.S1 --- 12.1366768774955 --- --- --- --- 4.32069683074951 1.12890934944153 3.69087791442871 1.92609310150146 0.432372987270355 0.696289002895355 0.665526986122131 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20G4.08 /DEF=sequence orphan --- --- --- --- --- --- SPAC20G4.08 // ||SPAC4F10.01|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -12.1366768774955 -3.82731955660298 1.5152917541003 -1.17064203447604 -2.24324401939935 Max fold change at or above threshold 2 12.1366768774955 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779875_at SPBC577.06c.S1 --- 12.1287799766267 --- --- --- --- 0.617026209831238 7.48377513885498 1.73163163661957 0.212083160877228 0.904784977436066 0.5 0.601073980331421 0.991943001747131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC577.06c /DEF=phosphatidylinositol kinase (predicted) --- --- --- --- --- --- SPBC577.06c // |||phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.47743026471599 12.1287799766267 6.04813880085958 2.80641504206634 -2.90935974020317 Max fold change at or above threshold 1 12.1287799766267 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777036_at SPBC3B8.02.S1 --- 12.1252100219579 --- --- --- --- 10.7424364089966 13.3480081558228 19.0434970855713 5.03607988357544 0.0107421996071935 0.274170011281967 0.0561522990465164 0.194580003619194 P A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B8.02 /GEN=php5 /DEF=transcription factor --- --- --- --- --- --- U88525 // Schizosaccharomyces pombe CCAAT-binding factor subunit Php5p (php5+) mRNA, complete cds. // gb // 11 // --- /// SPBC3B8.02 // |php5||transcription factor|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -12.1252100219579 1.242549422461 -2.69305298561782 1.77273537962233 -2.13309491853609 Max fold change at or above threshold 4 12.1252100219579 Max fold change at or above threshold PAAAMA No 4 0 PAMA 2 1 1 No No x = 1
1770587_at YLR307C-A.S1 Identified by homology to Ashbya gossypii 12.1144532562909 5237.9072265625 1368.56469726563 --- --- --- --- 1327.38452148438 6530.953125 3944.861328125 1409.74487304688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR307C-A /GEN=CDA1 /DB_XREF=GI:33438843 /SEG=NC_001144:-746850,747113 /DEF=Identified by homology to Ashbya gossypii /NOTE=Ylr307c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028525 // YLR307C-A SGDID:S0028525, Chr XII from 747113-746850, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YLR307C-A // cdna:known chromosome:SGD1:XII:746850:747113:-1 gene:YLR307C-A // ensembl // 11 // --- --- No cerevisiae_gene -12.1144532562909 4.9201667032373 -1.54699854639014 2.97190547597585 1.06204709353579 Max fold change at or above threshold 4 12.1144532562909 Max fold change at or above threshold -0.799580862283855 1.30618163879133 0.259650777928206 -0.766251554435678 3303.23596191406 2471.10896924926 0.748087329437214 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777952_at SPBC15D4.04.S1 --- 12.1125338299824 --- --- --- --- 13.7024774551392 2.07516503334045 18.955680847168 4.25267171859741 0.274170011281967 0.665526986122131 0.274170011281967 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC15D4.04 /GEN=gpt2 /DEF=UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase --- --- --- --- --- --- SPBC15D4.04 // |gpt2|gpt|UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.30101529815368 -6.6030784226746 -12.1125338299824 1.38337617479959 -3.2220868107963 Max fold change at or above threshold 3 12.1125338299824 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773986_at SPBC13A2.02.S1 --- 12.1030243607926 --- --- --- --- 11.5088605880737 7.81242942810059 1.4309389591217 3.04717636108398 0.0375977009534836 0.334473013877869 0.303710997104645 0.334473013877869 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13A2.02 /DEF=nucleoporin --- --- --- --- --- --- SPBC13A2.02 // |||nucleoporin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.0758805418818 -1.4731474625137 -12.1030243607926 -8.0428731880623 -3.77689349886517 Max fold change at or above threshold 3 12.1030243607926 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1773956_at SPBC530.08.S1 --- 12.0904302339948 --- --- --- --- 0.289699047803879 3.50258612632751 0.46109539270401 0.47952601313591 0.981445014476776 0.5 0.962401986122131 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC530.08 /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPBC530.08 // |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 8.64097444964538 12.0904302339948 11.7865315486447 1.59163585865896 1.65525574478429 Max fold change at or above threshold 1 12.0904302339948 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772584_at SPAC644.08.S1 --- 12.0871487672421 --- --- --- --- 0.902310132980347 3.08431339263916 10.9063568115234 0.624172210693359 0.633789002895355 0.466064006090164 0.111571997404099 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC644.08 /DEF=enolase-phosphatase E1 (predicted) --- --- --- --- --- --- SPAC644.08 // |||haloacid dehalogenase-like hydrolase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.50590041703626 3.418240890692 7.5508094329517 12.0871487672421 -1.44561087072111 Max fold change at or above threshold 2 12.0871487672421 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770715_at SPBC4B4.06.S1 --- 12.0837833366433 --- --- --- --- 8.51542186737061 1.49326026439667 1.22631096839905 2.10190868377686 0.466064006090164 0.798828125 0.358154296875 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4B4.06 /DEF=DUF852 --- --- --- --- --- --- SPBC4B4.06 // |vps25||ESCRT II complex subunit Vps25|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -12.0837833366433 -5.70257045633713 -1.10170700378229 -6.94393354280074 -4.05128059705691 Max fold change at or above threshold 1 12.0837833366433 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769348_at SPAC1296.05c.S1 --- 12.081919293562 --- --- --- --- 0.419788539409637 5.07185125350952 4.79592418670654 1.9641900062561 0.633789002895355 0.466064006090164 0.194580003619194 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1296.05c /DEF=cyclin --- --- --- --- --- --- SPAC1296.05c // |||cyclin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.79861727079663 12.081919293562 9.28883299637379 11.4246191509926 4.67899864302729 Max fold change at or above threshold 2 12.081919293562 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773045_at SPAC23A1.09.S1 --- 12.0640490231055 --- --- --- --- 0.658931255340576 7.94937896728516 0.256021946668625 5.31741333007813 0.665526986122131 0.0805663987994194 0.725830018520355 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23A1.09 /DEF=rrm RNA recognition motif --- --- --- --- --- --- SPAC23A1.09 // |||rrm RNA recognition motif|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.96983708414413 12.0640490231055 -1.98678767555411 -2.57372957246297 8.06975429831411 Max fold change at or above threshold 2 12.0640490231055 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776163_at SPCC191.03c.S1 --- 12.0634859549065 --- --- --- --- 5.39596223831177 3.53100228309631 5.18202972412109 4.52864599227905 0.274170011281967 0.633789002895355 0.567627012729645 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC191.03c /DEF=sequence orphan --- --- --- --- --- --- SPCC191.03c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.59286017961672 -1.52816730369828 -12.0634859549065 -1.04128353667963 -1.19151778423648 Max fold change at or above threshold 4 12.0634859549065 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779949_at SPAC19D5.02c.S1 --- 12.0615676844153 --- --- --- --- 3.32460355758667 0.631654560565948 3.42101144790649 2.61472320556641 0.171387001872063 0.696289002895355 0.171387001872063 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19D5.02c /DEF=localization peroxisomal membrane --- --- --- --- --- --- SPAC19D5.02c // |||localization peroxisomal membrane|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.37592363865795 -5.26332550279998 -12.0615676844153 1.02899831172346 -1.27149349900939 Max fold change at or above threshold 3 12.0615676844153 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778134_at SPCC162.11c.S1 --- 12.0614439289144 --- --- --- --- 2.21035623550415 1.25469541549683 5.93395090103149 0.213988363742828 0.633789002895355 0.753906011581421 0.366210997104645 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC162.11c /DEF=uridine kinase (predicted) --- --- --- --- --- --- SPCC162.11c // |||uridine kinase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -12.0614439289144 -1.76166757940126 1.11284743907446 2.68461291701156 -10.3293291132436 Max fold change at or above threshold 1 12.0614439289144 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779177_at SPBC18E5.08.S1 --- 12.0533710950021 --- --- --- --- 4.82792615890503 4.01999282836914 0.400545716285706 2.91747331619263 0.149657994508743 0.366210997104645 0.919434010982513 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18E5.08 /DEF=N-acetyltransferase (predicted) --- --- --- --- --- --- SPBC18E5.08 // |||N-acetyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -11.8195426052235 -1.20097879897553 -2.41853772856464 -12.0533710950021 -1.65483129943604 Max fold change at or above threshold 3 12.0533710950021 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776321_at YAL063C-A.S1 Identified by expression profiling and mass spectrometry 12.0423220734009 1.47256982326508 6.96246683597565 --- --- --- --- 9.95614242553711 0.826762676239014 2.11837697029114 3.96879124641418 0.219482004642487 0.919434010982513 0.432372987270355 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL063C-A /GEN=SEO1 /DB_XREF=GI:33438755 /SEG=NC_001133:-22397,22687 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Yal063c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028813 // YAL063C-A SGDID:S0028813, Chr I from 22687-22397, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YAL063C-A // cdna:known chromosome:SGD1:I:22397:22687:-1 gene:YAL063C-A // ensembl // 11 // --- --- No cerevisiae_gene -2.09955781622716 -12.0423220734009 -10.6339614281294 -4.69989174031135 -2.50860824048947 Max fold change at or above threshold 2 12.0423220734009 Max fold change at or above threshold 1.42143174288185 -0.839875140367139 -0.519948006887188 -0.0616085956275194 4.21751832962036 4.03721397432853 0.957248708553197 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775119_at SPCC417.05c.S1 --- 12.0410650581654 --- --- --- --- 0.525483906269073 6.32738590240479 4.60023736953735 3.64108395576477 0.601073980331421 0.24609400331974 0.0676269978284836 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC417.05c /GEN=cfh2 /DEF=Chs Four Homologue (pers. comm. Henar Montero) --- --- --- --- --- --- SPCC417.05c // |chr2|cfh2|chitin synthase regulatory factor |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.1502517480122 12.0410650581654 4.53119743670627 8.75428783765988 6.92901135948464 Max fold change at or above threshold 3 12.0410650581654 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774953_at SPCC1739.12.S1 --- 12.0409371531755 --- --- --- --- 6.64708948135376 2.26724171638489 1.68336808681488 2.63273453712463 0.466064006090164 0.601073980331421 0.633789002895355 0.390625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1739.12 /GEN=ppe1 /DEF=serinethreonine protein phosphatase (PMID 8387356) --- --- --- --- --- --- SPCC1739.12 // |ppe1|esp1, ppx1|serine/threonine protein phosphatase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.85084456993522 -2.93179568517843 -12.0409371531755 -3.94868450543742 -2.52478530881942 Max fold change at or above threshold 2 12.0409371531755 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772063_at SPBC4.04c.S1 --- 12.0289268317315 --- --- --- --- 0.657466113567352 5.37196493148804 4.07070255279541 0.858380973339081 0.904784977436066 0.466064006090164 0.432372987270355 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4.04c /GEN=mcm2 /DEF=MCM complex subunit (PMID 8298187) --- --- --- --- --- --- SPBC4.04c // |mcm2|cdc19, nda1|MCM complex subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 7.0485371812993 8.17070997369011 12.0289268317315 6.19150168927816 1.30558968078458 Max fold change at or above threshold 2 12.0289268317315 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771572_at SPAC589.12.S1 --- 12.0266551454045 --- --- --- --- 0.918114483356476 9.27711963653564 11.0418462753296 5.24692058563232 0.665526986122131 0.0239257998764515 0.0239257998764515 0.017578125 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC589.12 /DEF=hypothetical protein --- --- --- --- --- --- D89130 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0503. // gb // 11 // --- /// SPAC589.12 // ||SPAC688.01|hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.96627213268755 10.1045346791829 4.95447857145871 12.0266551454045 5.71488706555466 Max fold change at or above threshold 3 12.0266551454045 Max fold change at or above threshold AAPAPP No 4 0 APPP 1 3 0 No No 2 < x = 3
1772678_at SPAC977.15.S1 --- 12.0231472019933 --- --- --- --- 5.08101749420166 7.10334730148315 2.75226902961731 4.54042768478394 0.5 0.24609400331974 0.665526986122131 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC977.15 /DEF=dienelactone hydrolase family --- --- --- --- --- --- SPAC977.15 // |||dienelactone hydrolase family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -12.0231472019933 1.39801669834621 -4.46813200775155 -1.8461194888743 -1.1190614292194 Max fold change at or above threshold 4 12.0231472019933 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772119_at SPAC9.07c.S1 --- 12.0092968187448 --- --- --- --- 7.33240127563477 3.39854001998901 0.610560417175293 6.5817289352417 0.0537109375 0.334473013877869 0.194580003619194 0.129638999700546 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9.07c /DEF=GTP binding --- --- --- --- --- --- D89135 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0539. // gb // 10 // --- /// SPAC9.07c // |||GTPase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.04180489108655 -2.15751506014588 -8.26722087348057 -12.0092968187448 -1.1140539739298 Max fold change at or above threshold 3 12.0092968187448 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1773081_at SPAC29A4.16.S1 --- 11.9988430792072 --- --- --- --- 1.60454118251801 19.2526378631592 1.61089980602264 1.35979652404785 0.633789002895355 0.2392578125 0.633789002895355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29A4.16 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPAC29A4.16 // |hal4|sat4|halotolerence protein 4|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.35426968424277 11.9988430792072 7.15072028572051 1.00396289205532 -1.17998623628011 Max fold change at or above threshold 1 11.9988430792072 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770186_at SPBC1539.04.S1 --- 11.997865464512 --- --- --- --- 1.29678785800934 15.5586862564087 1.82228434085846 5.50933933258057 0.696289002895355 0.149657994508743 0.432372987270355 0.06494140625 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1539.04 /DEF=hypothetical protein --- --- --- --- --- --- SPBC1539.04 // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.61406890541627 11.997865464512 7.44222179221005 1.4052293361659 4.24845073814756 Max fold change at or above threshold 2 11.997865464512 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1776997_at SPCC777.08c.S1 --- 11.9843958674084 --- --- --- --- 6.86504888534546 0.57283228635788 4.9270601272583 5.32706022262573 0.213134765625 0.696289002895355 0.366210997104645 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC777.08c /DEF=sequence orphan --- --- --- --- --- --- SPCC777.08c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -1.68227994221587 -11.9843958674084 -6.57704941323786 -1.39333572313549 -1.28871246023978 Max fold change at or above threshold 3 11.9843958674084 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778849_at SPCC126.14.S1 --- 11.9826813620319 --- --- --- --- 1.78623521327972 0.477669715881348 1.09938490390778 0.380058199167252 0.601073980331421 0.601073980331421 0.633789002895355 0.845458984375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC126.14 /GEN=prp18 /DEF=involved in mRNA splicing (predicted) (2nd step) (PMID 12212850) --- --- --- --- --- --- SPCC126.14 // |prp18||U5 snRNP protein Prp18|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -7.74606256637617 -3.73947762207186 -11.9826813620319 -1.62475872365587 -4.69989916595289 Max fold change at or above threshold 0 11.9826813620319 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769662_at SPAC23H3.09c.S1 --- 11.9540438754848 --- --- --- --- 6.82572746276855 1.34848213195801 5.34824132919312 0.570997357368469 0.111571997404099 0.533936023712158 0.171387001872063 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H3.09c /GEN=gly1 /DEF=threonine aldolase activity (predicted) --- --- --- --- --- --- SPAC23H3.09c // |gly1||threonine aldolase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.1188156204443 -5.06178561881094 1.08848323123236 -1.27625644443355 -11.9540438754848 Max fold change at or above threshold 2 11.9540438754848 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775097_at SPCC417.02.S1 --- 11.948396577657 --- --- --- --- 6.17998695373535 5.16463661193848 0.517223119735718 4.75293731689453 0.5 0.5 0.725830018520355 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC417.02 /GEN=hos3 /DEF=involved in osmotic stress response (required) (PMID 10879493) --- --- --- --- --- --- AB044536 // Schizosaccharomyces pombe mRNA for Hos3, complete cds. // gb // 11 // --- /// SPCC417.02 // |dad5|hsk3, hos3|DASH complex subunit Dad5|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.30945716681589 -1.19659666653987 -2.66115232596209 -11.948396577657 -1.30024583572106 Max fold change at or above threshold 3 11.948396577657 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775125_at SPAC17A5.08.S1 --- 11.944135221983 --- --- --- --- 11.7532920837402 3.69235396385193 8.03228855133057 0.98402202129364 0.030273400247097 0.274170011281967 0.111571997404099 0.398925989866257 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A5.08 /DEF=COPII-coated vesicle component (predicted) --- --- --- --- --- --- SPAC17A5.08 // |||COPII-coated vesicle component |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.64613408622134 -3.1831433819197 -3.33347127880592 -1.46325570958146 -11.944135221983 Max fold change at or above threshold 3 11.944135221983 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1769644_at SPBC337.10c.S1 --- 11.9432427268648 --- --- --- --- 0.220249533653259 0.821134150028229 0.255269438028336 0.220691308379173 0.919434010982513 0.567627012729645 0.805419981479645 0.71826171875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC337.10c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC337.10c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 11.9432427268648 3.72819926747699 3.20399445330585 1.15900103756954 1.00200579187881 Max fold change at or above threshold 0 11.9432427268648 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771487_at SPCP1E11.04c.S1 --- 11.9398329703974 --- --- --- --- 0.8416468501091 10.0491228103638 5.33428573608398 0.960966944694519 0.567627012729645 0.194580003619194 0.5 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP1E11.04c /DEF=hypothetical protein --- --- --- --- --- --- SPCP1E11.04c // |pal1||membrane associated protein Pal1 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.19242673643572 11.9398329703974 7.04971406447552 6.33791445354131 1.14176978690047 Max fold change at or above threshold 2 11.9398329703974 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775519_at SPAC2E1P3.04.S1 --- 11.9320181965462 --- --- --- --- 0.371296048164368 1.31279110908508 0.570064663887024 0.496191889047623 0.850341975688934 0.366210997104645 0.633789002895355 0.525390625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2E1P3.04 /DEF=copper amine oxidase (predicted) --- --- --- --- --- --- SPAC2E1P3.04 // |||copper amine oxidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 11.9320181965462 3.53569911550453 8.54878851828628 1.53533727790893 1.33637805061681 Max fold change at or above threshold 0 11.9320181965462 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-TagQ-3_at AFFX-r2-TagQ-3 --- 11.9257155626162 --- --- --- --- 0.524139702320099 6.25074100494385 5.35010051727295 3.76551270484924 0.805419981479645 0.398925989866257 0.149657994508743 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Clone 76H1, synthetic insert (1000 bp)+ poly A tail (21 bp), 3 prime target sequence 401-1000 --- --- --- --- --- --- AFFX-r2-TagQ-3 // --- // unknown // --- // --- /// AFFX-r2-TagQ-3 // --- // unknown // --- // --- /// AFFX-r2-TagQ-3 // --- // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-TagQ-3 // --- // unknown // --- // --- /// AFFX-r2-TagQ-3 // --- // affx // --- // --- /// AFFX-r2-TagQ-3 // --- // affx // --- // --- /// AFFX-r2-TagQ-3 // --- // affx // --- // --- /// AFFX-r2-TagQ-3 // --- // affx // --- // --- /// AFFX-r2-TagQ-3 // --- // affx // --- // --- /// AFFX-r2-TagQ-3 // --- // affx // --- // --- /// AFFX-r2-TagQ-3 // --- // affx // --- // --- /// AFFX-r2-TagQ-3 // --- // affx // --- // --- /// AFFX-r2-TagQ-3 // --- // affx // --- // --- /// AFFX-r2-TagQ-3 // --- // affx // --- // --- /// AFFX-r2-TagQ-3 // --- // affx // --- // --- /// AFFX-r2-TagQ-3 // --- // affx // --- // --- --- AFFX_control No 5.94113972597132 11.9257155626162 -1.1179226858301 10.207394123343 7.18417759269378 Max fold change at or above threshold 3 11.9257155626162 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771480_at SPAC11G7.06c.S1 --- 11.9225625415434 --- --- --- --- 0.390926629304886 1.58858680725098 0.353918731212616 0.5678990483284 0.916259765625 0.665526986122131 0.888427972793579 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11G7.06c /GEN=B8647-2 /DEF=Pfam-B_8647 domain --- --- --- --- --- --- SPAC11G7.06c // |B8647-2||Pfam-B_8647 domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.3006073549891 4.06364439812062 11.9225625415434 -1.10456609054138 1.4526998310097 Max fold change at or above threshold 0 11.9225625415434 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770444_at SPBC6B1.12c.S1 --- 11.9138870663468 --- --- --- --- 2.68955183029175 2.57540416717529 3.0796639919281 0.498272031545639 0.805419981479645 0.932372987270355 0.828612983226776 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC6B1.12c /DEF=SAGA histone acetylase complex (predicted) --- --- --- --- --- --- SPBC6B1.12c // |||SAGA histone acetylase complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.12588741044105 -1.04432223282517 -11.9138870663468 1.14504727413788 -5.39775797158183 Max fold change at or above threshold 3 11.9138870663468 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779969_at SPBC8D2.11.S1 --- 11.9001189978028 --- --- --- --- 4.52322721481323 3.16113209724426 4.30891990661621 3.84988403320313 0.334473013877869 0.274170011281967 0.171387001872063 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8D2.11 /DEF=hypothetical protein --- --- --- --- --- --- SPBC8D2.11 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -11.9001189978028 -1.43088838924396 -1.6199707408118 -1.04973573722453 -1.17489960107964 Max fold change at or above threshold 4 11.9001189978028 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1776451_at SPAC23A1.03.S1 --- 11.9000690644154 --- --- --- --- 0.70302402973175 1.92370295524597 2.81246399879456 3.63631296157837 0.932372987270355 0.753906011581421 0.601073980331421 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23A1.03 /GEN=apt1 /DEF=adenine phosphoribosyltransferase (APRT) (predicted) --- --- --- --- --- --- SPAC23A1.03 // |apt1||adenine phosphoribosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.66358217843092 2.73632603423241 11.9000690644154 4.00052328206718 5.17238786697783 Max fold change at or above threshold 2 11.9000690644154 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771244_at SPAC15A10.12c.S1 --- 11.8998946752815 --- --- --- --- 3.79309844970703 1.83689320087433 0.318750590085983 0.544347107410431 0.35791015625 0.567627012729645 0.976073980331421 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15A10.12c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC15A10.12c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -11.6903664415949 -2.06495317632053 -7.0465951852823 -11.8998946752815 -6.96816130382609 Max fold change at or above threshold 1 11.8998946752815 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779368_at SPBC577.03c.S1 --- 11.888642703731 --- --- --- --- 0.234378904104233 2.78644704818726 0.885253667831421 0.629545331001282 0.985840022563934 0.533936023712158 0.962401986122131 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC577.03c /DEF=N-acetyltransferase (predicted) --- --- --- --- --- --- SPBC577.03c // |||N-acetyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.32819163092249 11.888642703731 2.04354671419531 3.77701940033704 2.68601533660773 Max fold change at or above threshold 1 11.888642703731 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774002_at SPAPB8E5.08.S1 --- 11.8856700055321 --- --- --- --- 0.367671996355057 4.37002801895142 0.139527037739754 0.29006016254425 0.828612983226776 0.567627012729645 0.953857004642487 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB8E5.08 /DEF=dubious --- --- --- --- --- --- SPAPB8E5.08 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.23176373558455 11.8856700055321 -2.02833431130076 -2.63513081271631 -1.26757150354615 Max fold change at or above threshold 1 11.8856700055321 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775375_at SPBC23E6.08.S1 --- 11.8712248671992 --- --- --- --- 0.299799829721451 0.601944863796234 3.55899119377136 0.238707408308983 0.780517995357513 0.850341975688934 0.366210997104645 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23E6.08 /GEN=sat1 /DEF=involved in G1 phase arrest (starvation induced) --- --- --- --- --- --- SPBC23E6.08 // |sat1||Sat1 protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.00137738897113 2.00782256732938 11.2781332641723 11.8712248671992 -1.25593014412603 Max fold change at or above threshold 1 11.8712248671992 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776468_at SPCC737.09c.S1 --- 11.8706706270308 --- --- --- --- 0.805551946163177 4.64173173904419 7.8809928894043 1.25227582454681 0.725830018520355 0.334473013877869 0.171387001872063 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC737.09c /GEN=hmt1 /DEF=ABC transporter family --- --- --- --- --- --- Z14055 // S.pombe mRNA for HMT1. // gb // 11 // --- /// SPCC737.09c // |hmt1|SPCC74.08c|ABC transporter family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 9.77658778421092 5.76217556316838 11.8706706270308 9.78334535338318 1.55455626482112 Max fold change at or above threshold 2 11.8706706270308 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773523_at SPAC27F1.06c.S1 --- 11.8694924207473 --- --- --- --- 0.327958136796951 1.64696359634399 1.50256836414337 0.673339128494263 0.780517995357513 0.665526986122131 0.24609400331974 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27F1.06c /DEF=peptidyl-prolyl cis-trans isomerase (predicted) --- --- --- --- --- --- SPAC27F1.06c // |||peptidyl-prolyl cis-trans isomerase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 11.8694924207473 5.02187142672932 10.4738001875423 4.58158586586207 2.05312524052772 Max fold change at or above threshold 0 11.8694924207473 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769711_at YOL019W-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 11.8582057241733 5.87988984584808 0.681540817022324 --- --- --- --- 0.789385676383972 9.36069774627686 2.39908194541931 0.573695957660675 0.870360970497131 0.0805663987994194 0.432372987270355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL019W-A /GEN=TAT2 /DB_XREF=GI:33438877 /SEG=NC_001147:+288420,288572 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Yol019w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028707 // YOL019W-A SGDID:S0028707, Chr XV from 288420-288572, Uncharacterized ORF // sgd // 10 // --- /// YOL019W-A // cdna:known chromosome:SGD1:XV:288420:288572:1 gene:YOL019W-A // ensembl // 10 // --- --- No cerevisiae_gene 11.8013285417196 11.8582057241733 -1.76937275128389 3.03917592780383 -1.3759652056863 Max fold change at or above threshold 1 11.8582057241733 Max fold change at or above threshold -0.602595229379882 1.4706076293311 -0.213246798310312 -0.654765601640904 3.2807153314352 4.13433351872866 1.26019270221779 APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772099_at SPAC4C5.02c.S1 --- 11.8581409576642 --- --- --- --- 0.611931145191193 7.25636577606201 4.12723350524902 2.90921020507813 0.888427972793579 0.24609400331974 0.334473013877869 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4C5.02c /GEN=ryh1 /DEF=small GTPase --- --- --- --- --- --- SPAC4C5.02c // |ryh1|hos1|GTPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.13602858718154 11.8581409576642 6.27966977259341 6.74460441780505 4.75414632502349 Max fold change at or above threshold 3 11.8581409576642 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769869_at SPBC13G1.02.S1 --- 11.8539033575482 --- --- --- --- 0.710280120372772 5.9151725769043 3.95230841636658 6.17818641662598 0.696289002895355 0.171387001872063 0.567627012729645 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13G1.02 /DEF=mannose-1-phosphate guanyltransferase (predicted) --- --- --- --- --- --- SPBC13G1.02 // |||mannose-1-phosphate guanyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.45064630009945 8.32794331030956 11.8539033575482 5.56443620341269 8.69823924310808 Max fold change at or above threshold 3 11.8539033575482 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1778455_at SPCC895.07.S1 --- 11.8496014966755 --- --- --- --- 0.389453649520874 4.61487054824829 0.835429191589355 2.16519975662231 0.753906011581421 0.366210997104645 0.567627012729645 0.21337890625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC895.07 /GEN=alp14 /DEF=localization spindle pole body --- --- --- --- --- --- SPCC895.07 // |alp14|mtc1|Mad2-dependent spindle checkpoint component |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.36822117347735 11.8496014966755 4.74417396649009 2.14513124377482 5.55958265967222 Max fold change at or above threshold 1 11.8496014966755 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775261_s_at SPAC212.10.S1 --- 11.8485192058926 --- --- --- --- 4.63179397583008 0.390917539596558 1.13737142086029 0.440532058477402 0.219482004642487 0.828612983226776 0.423828125 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC212.10 /DEF=pseudo-malic acid transport protein --- --- --- --- --- --- SPBCPT2R1.08c // |||RecQ type DNA helicase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.35807087351295 -11.8485192058926 -1.8981023912073 -4.07236711849737 -10.5140906018028 Max fold change at or above threshold 1 11.8485192058926 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772149_at SPCC14G10.04.S1 --- 11.846253626505 --- --- --- --- 0.868099808692932 10.283730506897 1.93298888206482 0.697042644023895 0.904784977436066 0.567627012729645 0.919434010982513 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC14G10.04 /DEF=proline-rich protein --- --- --- --- --- --- SPCC14G10.04 // |||proline-rich protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.67173604934477 11.846253626505 -1.44492903186378 2.2266896763579 -1.24540416018388 Max fold change at or above threshold 1 11.846253626505 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775182_at SPAC4G8.08.S1 --- 11.8363840428533 --- --- --- --- 3.24101519584656 0.340818732976913 5.45066452026367 0.81266862154007 0.366210997104645 0.888427972793579 0.334473013877869 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G8.08 /DEF=mitochondrial carrier --- --- --- --- --- --- SPAC4G8.08 // |||mitochondrial carrier|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -11.8363840428533 -9.50949839974348 1.68771078998276 1.6817769096698 -3.98811410941964 Max fold change at or above threshold 2 11.8363840428533 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774251_at SPAC57A10.10c.S1 --- 11.830571208053 --- --- --- --- 6.89977502822876 5.22466802597046 0.669648706912994 0.583215713500977 0.466064006090164 0.533936023712158 0.919434010982513 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC57A10.10c /GEN=sla1 /DEF=La protein homolog --- --- --- --- --- --- AB011371 // Schizosaccharomyces pombe mRNA for SLA1, complete cds. // gb // 10 // --- /// AF022949 // Schizosaccharomyces pombe La autoantigen homolog (sla1) mRNA, complete cds. // gb // 10 // --- /// SPAC57A10.10c // |sla1||La protein homolog|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.36756124708658 -1.32061501207958 -9.99154354001429 -10.303574033669 -11.830571208053 Max fold change at or above threshold 2 11.830571208053 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773763_at SPCC11E10.09c.S1 --- 11.8293021313038 --- --- --- --- 3.75922513008118 1.04968500137329 0.317789256572723 3.73107218742371 0.601073980331421 0.753906011581421 0.870360970497131 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC11E10.09c /DEF=alpha-amylase (predicted) --- --- --- --- --- --- SPCC11E10.09c // ||SPCC188.01c|alpha-amylase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.10747289252718 -3.58128879155463 -4.14530366692044 -11.8293021313038 -1.0075455368439 Max fold change at or above threshold 2 11.8293021313038 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778981_at SPBC530.14c.S1 --- 11.8227916058339 --- --- --- --- 10.5613250732422 6.97837686538696 0.893302142620087 4.52918291091919 0.0375977009534836 0.111571997404099 0.633789002895355 0.0805663987994194 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC530.14c /GEN=dsk1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPBC530.14c // |dsk1||SR protein-specific kinase Dsk1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.4697071302331 -1.51343575690599 -3.1989404604794 -11.8227916058339 -2.33183893893541 Max fold change at or above threshold 3 11.8227916058339 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1774786_at SPAC631.02.S1 --- 11.7640117205854 --- --- --- --- 6.61263084411621 3.89864611625671 0.562106788158417 2.55739307403564 0.00415039015933871 0.398925989866257 0.753906011581421 0.432372987270355 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC631.02 /DEF=bromodomain protein --- --- --- --- --- --- D89157 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0641. // gb // 10 // --- /// SPAC631.02 // |||bromodomain protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.43182441899244 -1.69613518306846 -2.1569758986653 -11.7640117205854 -2.58569201240593 Max fold change at or above threshold 3 11.7640117205854 Max fold change at or above threshold PAAAAA No 3 0 PAAA 3 1 0 No No x = 1
1775562_at SPAC6B12.12.S1 --- 11.7617891987766 --- --- --- --- 3.13736271858215 0.717185795307159 3.30378127098084 2.91236901283264 0.171387001872063 0.696289002895355 0.366210997104645 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6B12.12 /GEN=tom70 /DEF=mitochondrial TOM complex component --- --- --- --- --- --- SPAC6B12.12 // |tom70||mitochondrial TOM complex component Tom70|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.07705721680732 -4.37454665040942 -11.7617891987766 1.05304409063479 -1.07725453222381 Max fold change at or above threshold 3 11.7617891987766 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773040_at SPCC663.07c.S1 --- 11.7480288588404 --- --- --- --- 5.46512603759766 3.13576197624207 2.37193536758423 0.465195149183273 0.398925989866257 0.601073980331421 0.696289002895355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC663.07c /DEF=short chain dehydrogenase pseudogene --- --- --- --- --- --- SPCC663.07c // |||short chain dehydrogenase pseudogene|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -6.32436934505693 -1.74283828906782 -1.21501267678916 -2.30407881778153 -11.7480288588404 Max fold change at or above threshold 2 11.7480288588404 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778870_at SPAC17H9.08.S1 --- 11.7365731623021 --- --- --- --- 0.702086567878723 8.24009037017822 1.5197993516922 3.76960587501526 0.828612983226776 0.274170011281967 0.601073980331421 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17H9.08 /DEF=mitochondrial carrier --- --- --- --- --- --- SPAC17H9.08 // |||mitochondrial coenzyme A transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.45459051139743 11.7365731623021 2.37771679195399 2.1646894004597 5.36914683669951 Max fold change at or above threshold 2 11.7365731623021 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772354_at SPAC644.05c.S1 --- 11.7298332359419 --- --- --- --- 4.74398422241211 2.72915482521057 0.404437482357025 0.500596642494202 0.398925989866257 0.5 0.725830018520355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC644.05c /DEF=deoxyuridine 5-triphosphate nucleotidohydrolase (predicted) --- --- --- --- --- --- SPAC644.05c // |||deoxyuridine 5'-triphosphate nucleotidohydrolase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.56475564671021 -1.73826130294608 -2.34896202306899 -11.7298332359419 -9.47666008860029 Max fold change at or above threshold 2 11.7298332359419 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778807_at SPBC216.07c.S1 --- 11.7021678582993 --- --- --- --- 6.62822914123535 7.88048362731934 3.62083029747009 0.56641036272049 0.601073980331421 0.366210997104645 0.533936023712158 0.79931640625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC216.07c /GEN=tor2 /DEF=phosphatidylinositol kinase --- --- --- --- --- --- SPBC216.07c // |tor2|SPBC646.01c|phosphatidylinositol kinase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -10.0378015145627 1.18892745851128 -6.82260311801079 -1.83058265554908 -11.7021678582993 Max fold change at or above threshold 3 11.7021678582993 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775612_at SPAC22H10.03c.S1 --- 11.6924477675392 --- --- --- --- 2.0360689163208 0.174135386943817 4.66745615005493 3.13279795646667 0.725830018520355 0.904784977436066 0.466064006090164 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22H10.03c /GEN=kap114 /DEF=karyopherin --- --- --- --- --- --- SPAC22H10.03c // |kap114||karyopherin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.64844815815829 -11.6924477675392 -9.64544371614055 2.29238613322042 1.53865025459338 Max fold change at or above threshold 2 11.6924477675392 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779390_at SPAC15A10.01.S1 --- 11.6922758928436 --- --- --- --- 0.74052882194519 8.65846729278564 3.59523248672485 2.1334867477417 0.432372987270355 0.0952147990465164 0.149657994508743 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15A10.01 /DEF=ABC transporter family --- --- --- --- --- --- SPAC15A10.01 // ||SPAC8C9.18|ABC family iron transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.43954207384861 11.6922758928436 6.38969183223583 4.85495281234435 2.88103134478621 Max fold change at or above threshold 2 11.6922758928436 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775275_at SPCC16C4.11.S1 --- 11.6921577835378 --- --- --- --- 0.74847823381424 8.7513256072998 3.64022827148438 3.69885277748108 0.86572265625 0.432372987270355 0.5 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16C4.11 /GEN=pef1 /DEF=Pho85PhoA-like cyclin-dependent kinase --- --- --- --- --- --- SPCC16C4.11 // |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.52493899802833 11.6921577835378 -2.09803719930807 4.86350585364894 4.94183078461982 Max fold change at or above threshold 3 11.6921577835378 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778113_at SPBC11C11.03.S1 --- 11.6718882501274 --- --- --- --- 3.17368483543396 0.931727588176727 0.584309995174408 1.23599481582642 0.601073980331421 0.805419981479645 0.888427972793579 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11C11.03 /GEN=ndc10 /DEF=localization centromere (GFP) (PMID 11266451) --- --- --- --- --- --- SPBC11C11.03 // |ndc80|ndc10, tid3|spindle pole body protein Ndc80|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.63602242105645 -3.40623683972314 -11.6718882501274 -5.43150872250039 -2.56771694734978 Max fold change at or above threshold 1 11.6718882501274 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777779_at YPL200W.S1 Protein required for accurate chromosome segregation during meiosis 11.6705720014448 94.5696601867676 9.43526363372803 CSM4 45132 // meiotic chromosome segregation // inferred from mutant phenotype 5789 // endoplasmic reticulum membrane // inferred from direct assay --- 9.2777271270752 108.276382446289 80.8629379272461 9.59280014038086 0.0952147990465164 0.000244141003349796 0.000244141003349796 0.00585938012227416 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL200W /GEN=CSM4 /DB_XREF=GI:6325056 /SEG=NC_001148:+171483,171953 /DEF=Protein required for accurate chromosome segregation during meiosis /NOTE=Csm4p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 12514182]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiotic chromosome segregation [goid GO:0045132] [evidence IMP] [pmid 11470404] --- --- --- --- --- S0006121 // span:132-154 // numtm:1 S0006121 // CSM4 SGDID:S0006121, Chr XVI from 171483-171953, Verified ORF // sgd // 11 // --- /// YPL200W // cdna:known chromosome:SGD1:XVI:171483:171953:1 gene:YPL200W // ensembl // 11 // --- --- No cerevisiae_gene 2.52743482434217 11.6705720014448 2.84725939573632 8.71581334735139 1.03396015090659 Max fold change at or above threshold 4 11.6705720014448 Max fold change at or above threshold -0.847535974097254 1.11631288760088 0.572508917331206 -0.841285830834833 52.0024619102478 50.4105266194518 0.969387309132718 APPPPP Called_P_>2EXP 2 0 APPP 1 3 0 Yes Yes 2 < x = 3
1778880_at SPCC16A11.13.S1 --- 11.6699897227494 --- --- --- --- 0.532235562801361 6.21118354797363 1.74043834209442 4.39866971969604 0.753906011581421 0.0239257998764515 0.567627012729645 0.0239257998764515 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16A11.13 /GEN=luc7 /DEF=U1 snRNA-associated protein --- --- --- --- --- --- SPCC16A11.13 // |luc7||U1 snRNA-associated protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.17419463793382 11.6699897227494 7.0099454265339 3.27005270548594 8.26451674244417 Max fold change at or above threshold 2 11.6699897227494 Max fold change at or above threshold AAPAAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1777264_at SPBC336.12c.S1 --- 11.6697861366946 --- --- --- --- 6.3009147644043 1.06743228435516 1.3297826051712 0.539934039115906 0.24609400331974 0.870360970497131 0.601073980331421 0.985840022563934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC336.12c /GEN=cdc10 /DEF=transcription factor --- --- --- --- --- --- SPBC336.12c // |cdc10||MBF transcription factor complex subunit Cdc10|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.09747330668886 -5.90287070829105 -8.7374460148968 -4.73830439644913 -11.6697861366946 Max fold change at or above threshold 1 11.6697861366946 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778797_at SPBC19C7.12c.S1 --- 11.6659173871822 --- --- --- --- 0.589195013046265 6.04892015457153 6.87350034713745 3.50873970985413 0.753906011581421 0.274170011281967 0.303710997104645 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C7.12c /DEF=mannosyltransferase (predicted) --- --- --- --- --- --- SPBC19C7.12c // |||alpha-1,2-mannosyltransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 6.62062192490237 10.2664143800154 1.84437916967963 11.6659173871822 5.95514156121789 Max fold change at or above threshold 3 11.6659173871822 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780235_at SPBC21C3.12c.S1 --- 11.6578086404064 --- --- --- --- 0.647264957427979 7.54569101333618 1.85470962524414 1.49835729598999 0.774169921875 0.398925989866257 0.805419981479645 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21C3.12c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC21C3.12c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.61855805860118 11.6578086404064 2.0103505712705 2.86545657069735 2.31490563299453 Max fold change at or above threshold 1 11.6578086404064 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777124_at SPAC22F8.12c.S1 --- 11.6469893355562 --- --- --- --- 3.22925925254822 0.84368097782135 0.277261286973953 0.315054386854172 0.334473013877869 0.725830018520355 0.850341975688934 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F8.12c /DEF=serine-rich protein --- --- --- --- --- --- SPAC22F8.12c // |||serine-rich protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.92930551243617 -3.82758333711302 1.29007393778801 -11.6469893355562 -10.2498469702088 Max fold change at or above threshold 1 11.6469893355562 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775414_at SPAC2G11.03c.S1 --- 11.6416756216923 --- --- --- --- 10.530481338501 0.904550313949585 1.25436353683472 3.37865424156189 0.24609400331974 0.805419981479645 0.432372987270355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2G11.03c /GEN=vps45 /DEF=sec1 family --- --- --- --- --- --- SPAC2G11.03c // |vps45||sec1 family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.08300454355683 -11.6416756216923 -3.98299383650117 -8.39507928066355 -3.11676797494168 Max fold change at or above threshold 2 11.6416756216923 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772021_at SPAC922.04.S1 --- 11.6341089451484 --- --- --- --- 2.37646794319153 3.35796046257019 5.18395137786865 0.431649476289749 0.601073980331421 0.665526986122131 0.5 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC922.04 /DEF=hypothetical protein --- --- --- --- --- --- SPAC922.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -11.6341089451484 1.4130047376362 -2.38656258746725 2.18136810669819 -5.50555039153181 Max fold change at or above threshold 2 11.6341089451484 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770903_at SPBC6B1.09c.S1 --- 11.6256949732696 --- --- --- --- 1.6731972694397 0.741797089576721 0.239135354757309 0.143922343850136 0.633789002895355 0.633789002895355 0.932372987270355 0.968505859375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC6B1.09c /GEN=nbs1 /DEF=FHA domain (phosphopeptide binding) --- --- --- --- --- --- AY269280 // Schizosaccharomyces pombe Nbs1p mRNA, complete cds. // gb // 11 // --- /// AB099299 // Schizosaccharomyces pombe nbs1 mRNA for Nbs1, complete cds. // gb // 11 // --- /// SPBC6B1.09c // |nbs1||FHA domain |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.87815224469352 -2.25559966862966 -9.14747246973045 -6.99686280657987 -11.6256949732696 Max fold change at or above threshold 0 11.6256949732696 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777876_at SPBC651.12c.S1 --- 11.6216071540978 --- --- --- --- 0.729109644889832 2.38398551940918 0.897587537765503 0.836172580718994 0.919434010982513 0.780517995357513 0.943848013877869 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC651.12c /DEF=hypothetical protein --- --- --- --- --- --- SPBC651.12c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.19594921041854 3.26972155164591 11.6216071540978 1.23107346618783 1.14684065226615 Max fold change at or above threshold 0 11.6216071540978 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772435_at SPCC61.04c.S1 --- 11.6192245252323 --- --- --- --- 3.21315312385559 10.1321134567261 4.51363563537598 5.59370279312134 0.601073980331421 0.334473013877869 0.303710997104645 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC61.04c /DEF=Rab interactor activity --- --- --- --- --- --- SPCC61.04c // |||Rab interactor activity|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -11.6192245252323 3.15332418536224 -3.74100511534793 1.40473717292374 1.74087650899414 Max fold change at or above threshold 4 11.6192245252323 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775197_at SPAC521.04c.S1 --- 11.6190688256522 --- --- --- --- 9.21246910095215 7.2284893989563 7.81502199172974 0.792874991893768 0.0676269978284836 0.696289002895355 0.334473013877869 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC521.04c /DEF=calcium permease (predicted) --- --- --- --- --- --- SPAC521.04c // |||calcium permease |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.50681993843236 -1.27446670977788 -1.88828349193035 -1.17881550566349 -11.6190688256522 Max fold change at or above threshold 3 11.6190688256522 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776579_at SPBC1709.12.S1 --- 11.6078320017724 --- --- --- --- 4.19093036651611 3.78169393539429 2.19330382347107 1.47125482559204 0.567627012729645 0.696289002895355 0.718505859375 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1709.12 /DEF=sequence orphan --- --- --- --- --- --- SPBC1709.12 // |rid1||GTPase binding protein Rid1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -11.6078320017724 -1.10821511156459 -1.09624668181502 -1.91078423411657 -2.84854145836338 Max fold change at or above threshold 2 11.6078320017724 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778047_at SPBC359.06.S1 --- 11.6049442646655 --- --- --- --- 0.68858003616333 7.99093294143677 4.96764945983887 2.90131998062134 0.870360970497131 0.2392578125 0.366210997104645 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC359.06 /DEF=class II aldolase and adducin N terminal domain --- --- --- --- --- --- SPBC359.06 // |||class II aldolase and adducin N terminal domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.12455875319859 11.6049442646655 1.10644377264886 7.21433849217863 4.21348257028635 Max fold change at or above threshold 3 11.6049442646655 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773652_at SPAC2F7.03c.S1 --- 11.5998095004063 --- --- --- --- 8.04133701324463 1.03232967853546 4.05334615707397 0.693230092525482 0.3251953125 0.919434010982513 0.567627012729645 0.981445014476776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F7.03c /GEN=pom1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPAC2F7.03c // |pom1||DYRK family protein kinase Pom1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.88091729266737 -7.78950482626118 -2.5766340131795 -1.98387621032828 -11.5998095004063 Max fold change at or above threshold 2 11.5998095004063 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772094_at SPBC18E5.07.S1 --- 11.592431069314 --- --- --- --- 0.736924588680267 8.54274749755859 1.09288489818573 0.128155469894409 0.665526986122131 0.366210997104645 0.753906011581421 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18E5.07 /DEF=proline-serine rich protein --- --- --- --- --- --- D89218 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1289. // gb // 9 // --- /// SPBC18E5.07 // |||proline-serine rich protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.88898910288095 11.592431069314 2.48305586837042 1.48303491968281 -5.75023905953792 Max fold change at or above threshold 1 11.592431069314 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775520_at SPBC21B10.04c.S1 --- 11.5847747354712 --- --- --- --- 0.606335282325745 7.02425765991211 6.03104257583618 0.985855460166931 0.828612983226776 0.0676269978284836 0.111571997404099 0.296142578125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21B10.04c /GEN=nrf1 /DEF=chaperone activity (predicted) --- --- --- --- --- --- AF087832 // Schizosaccharomyces pombe negative regulator of Cdc42p (nrf1) mRNA, complete cds. // gb // 11 // --- /// SPBC21B10.04c // |nrf1||small GTPase regulator |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.16633097533063 11.5847747354712 -2.69677636567042 9.94671224261051 1.6259246144896 Max fold change at or above threshold 2 11.5847747354712 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770042_at SPBC1D7.04.S1 --- 11.5804603470234 --- --- --- --- 3.60657739639282 1.39460647106171 7.54472684860229 3.86392188072205 0.466064006090164 0.665526986122131 0.0805663987994194 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1D7.04 /GEN=mlo3 /DEF=TREX complex (predicted) --- --- --- --- --- --- L42551 // Schizosaccharomyces pombe (clone cDNA50) ORF mRNA, complete cds. // gb // 11 // --- /// SPBC1D7.04 // |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.45512161651429 -2.58608967563958 -11.5804603470234 2.09193537788716 1.07135421094432 Max fold change at or above threshold 3 11.5804603470234 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773740_at SPAC22G7.03.S1 --- 11.5622189736256 --- --- --- --- 0.157057285308838 0.924502372741699 0.238885849714279 1.80788958072662 0.985840022563934 0.65673828125 0.828612983226776 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22G7.03 /DEF=sequence orphan --- --- --- --- --- --- SPAC22G7.03 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.91274823680144 5.88640234627611 11.5622189736256 1.52101094351996 11.5110201807677 Max fold change at or above threshold 0 11.5622189736256 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777887_at SPAC821.11.S1 --- 11.5587019637213 --- --- --- --- 0.333661884069443 1.09059941768646 0.628890693187714 1.12115609645844 0.828612983226776 0.981445014476776 0.981445014476776 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC821.11 /GEN=pro1 /DEF=gamma-glutamyl phosphate reductase (predicted) --- --- --- --- --- --- SPAC821.11 // |pro1||gamma-glutamyl phosphate reductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.32494396353644 3.26857657334178 11.5587019637213 1.884814308178 3.36015634385466 Max fold change at or above threshold 0 11.5587019637213 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775785_at SPAC22E12.09c.S1 --- 11.557674518067 --- --- --- --- 0.895557582378387 4.67159461975098 10.3505630493164 3.93694043159485 0.725830018520355 0.129638999700546 0.24609400331974 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22E12.09c /GEN=krp1 /DEF=kexin --- --- --- --- --- --- SPAC22E12.09c // |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.91977677415911 5.21640898549966 6.94770163493913 11.557674518067 4.39607738135528 Max fold change at or above threshold 3 11.557674518067 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773467_at SPAC4H3.01.S1 --- 11.5430722294849 --- --- --- --- 2.30688858032227 3.19732427597046 3.84339284896851 0.199850484728813 0.366210997104645 0.303710997104645 0.219482004642487 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4H3.01 /DEF=DNAJ domain protein --- --- --- --- --- --- SPAC4H3.01 // |||DNAJ domain protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.20255370604245 1.38598990139515 -1.87862001559661 1.66605048971702 -11.5430722294849 Max fold change at or above threshold 2 11.5430722294849 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779396_at SPBC1861.07.S1 --- 11.539259491579 --- --- --- --- 0.617651641368866 3.51201248168945 2.65770649909973 0.227656304836273 0.746826171875 0.334473013877869 0.366210997104645 0.79931640625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1861.07 /DEF=SKP1 family --- --- --- --- --- --- SPBC1861.07 // |||SKP1 family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 11.539259491579 5.68607325952535 -2.45407494058401 4.30292145457528 -2.71308823102031 Max fold change at or above threshold 2 11.539259491579 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773801_at SPCC11E10.03.S1 --- 11.5311830559347 --- --- --- --- 1.82038021087646 5.97380018234253 2.24656391143799 0.1578658670187 0.366210997104645 0.091064453125 0.111571997404099 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC11E10.03 /DEF=coiled-coil (region) (predicted) --- --- --- --- --- --- SPCC11E10.03 // |||dynactin complex subunit |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.95402950052932 3.28162223839288 1.61876122101396 1.23411795954227 -11.5311830559347 Max fold change at or above threshold 1 11.5311830559347 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776743_at SPBC32F12.04.S1 --- 11.5245634720117 --- --- --- --- 0.519131362438202 5.98276233673096 1.02897047996521 3.46292424201965 0.953857004642487 0.366210997104645 0.753906011581421 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32F12.04 /GEN=tug1 /DEF=tubulin (gamma) --- --- --- --- --- --- SPBC32F12.04 // |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -2.2274072825673 11.5245634720117 2.90140774887053 1.98210039773449 6.67061266681202 Max fold change at or above threshold 2 11.5245634720117 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774307_at SPAC144.02.S1 --- 11.5238130917072 --- --- --- --- 0.419236451387405 0.524395942687988 0.764808535575867 0.483896851539612 0.953857004642487 0.969726979732513 0.753906011581421 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC144.02 /DEF=transcription factor --- --- --- --- --- --- SPAC144.02 // |||transcription factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 11.5238130917072 1.25083575379138 -1.37101759203652 1.82428921207791 1.15423372642866 Max fold change at or above threshold 0 11.5238130917072 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772081_at SPBC15D4.12c.S1 --- 11.5145278078634 --- --- --- --- 3.26341414451599 0.357104688882828 1.40167808532715 0.326042652130127 0.466064006090164 0.4912109375 0.665526986122131 0.7470703125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC15D4.12c /DEF=sequence orphan --- --- --- --- --- --- SPBC15D4.12c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -11.5145278078634 -9.13853625032287 2.23738552812657 -2.32821942404437 -10.009163289512 Max fold change at or above threshold 1 11.5145278078634 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1769991_at SPAC15A10.13.S1 --- 11.5100310950691 --- --- --- --- 1.0071907043457 7.80576372146606 11.5927963256836 10.7512550354004 0.55908203125 0.129638999700546 0.111571997404099 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15A10.13 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPAC15A10.13 // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.67738852463101 7.7500355074632 6.72267392975772 11.5100310950691 10.6744978771271 Max fold change at or above threshold 3 11.5100310950691 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774701_at SPBC36.03c.S1 --- 11.507067500939 --- --- --- --- 9.49398899078369 5.74282836914063 4.99007844924927 3.56285333633423 0.0952147990465164 0.129638999700546 0.0952147990465164 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC36.03c /DEF=unknown specificity --- --- --- --- --- --- SPBC36.03c // |||membrane transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -11.507067500939 -1.65319044563479 -2.98434944385022 -1.90257309325708 -2.66471507372008 Max fold change at or above threshold 4 11.507067500939 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769976_at SPBC14F5.08.S1 --- 11.5064142553175 --- --- --- --- 1.1293580532074 12.9948616027832 9.23648548126221 4.33611869812012 0.665526986122131 0.303710997104645 0.274170011281967 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14F5.08 /GEN=med7 /DEF=RNA polymerase II holoenzyme component (PMID 10625684) --- --- --- --- --- --- SPBC14F5.08 // |med7||RNA polymerase II holoenzyme component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.43855279149464 11.5064142553175 4.96368425485938 8.17852713320671 3.8394543571062 Max fold change at or above threshold 3 11.5064142553175 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779374_at SPAC19G12.08.S1 --- 11.5031647866724 --- --- --- --- 13.544997215271 14.8600254058838 8.96648597717285 4.75353193283081 0.0107421996071935 0.0461426004767418 0.111571997404099 0.0676269978284836 P P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19G12.08 /DEF=fatty acid hydroxylase (predicted) --- --- --- --- --- --- SPAC19G12.08 // |||fatty acid hydroxylase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -11.5031647866724 1.09708589597421 -4.50694897348253 -1.51062492594694 -2.84945960323122 Max fold change at or above threshold 4 11.5031647866724 Max fold change at or above threshold PAPAAA No 4 0 PPAA 2 2 0 No No 1 < x = 2
1779855_at SPBC24C6.11.S1 --- 11.5019710999932 --- --- --- --- 0.781307399272919 8.98657512664795 4.20087718963623 5.49261856079102 0.6884765625 0.334473013877869 0.171387001872063 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC24C6.11 /GEN=cwf14 /DEF=G10 protein --- --- --- --- --- --- SPBC24C6.11 // |cwf14||G10 protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.22856505522551 11.5019710999932 -3.46666791847402 5.37672776879567 7.03003525360495 Max fold change at or above threshold 3 11.5019710999932 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1770202_at YER103W.S1 Heat shock protein that is highly induced upon stress; plays a role in SRP-dependent cotranslational protein-membrane targeting and translocation; member of the HSP70 family; cytoplasmic protein that concentrates in nuclei upon starvation 11.4926506281082 8165.97338867188 875.315582275391 SSA4 6457 // protein folding // traceable author statement /// 6616 // SRP-dependent cotranslational protein-membrane targeting, translocation // inferred from mutant phenotype /// 6950 // response to stress // inferred from sequence similarity /// 6950 // response to stress // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 51082 // unfolded protein binding // traceable author statement 881.912963867188 10135.517578125 6196.42919921875 868.718200683594 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER103W /GEN=SSA4 /DB_XREF=GI:6320950 /SEG=NC_001137:+364585,366513 /DEF=member of 70 kDa heat shock protein family /NOTE=Ssa4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11279056]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11279056]; go_function: chaperone activity [goid GO:0003754] [evidence TAS] [pmid 11279056]; go_function: heat shock protein activity [goid GO:0003773] [evidence IDA] [pmid 2121731]; go_process: SRP-dependent cotranslational membrane targeting, translocation [goid GO:0006616] [evidence IMP] [pmid 8754838]; go_process: protein folding [goid GO:0006457] [evidence TAS] [pmid 11279056]; go_process: response to stress [goid GO:0006950] [evidence IDA,ISS] [pmid 2121731] --- --- --- --- --- --- S0000905 // SSA4 SGDID:S0000905, Chr V from 364585-366513, Verified ORF // sgd // 11 // --- /// GENSCAN00000016888 // cdna:Genscan chromosome:SGD1:V:364759:366513:1 // ensembl // 11 // --- /// GENEFINDER00000019750 // cdna:GeneFinder chromosome:SGD1:V:364759:366513:1 // ensembl // 11 // --- /// YER103W // cdna:known chromosome:SGD1:V:364585:366513:1 gene:YER103W // ensembl // 11 // --- --- No cerevisiae_gene 2.97763055303447 11.4926506281082 1.0996787932837 7.02612327190136 -1.0151887725769 Max fold change at or above threshold 4 11.4926506281082 Max fold change at or above threshold -0.807531100274647 1.24608936369383 0.371901105008316 -0.810459368427503 4520.64448547363 4505.99552186768 0.996759540890017 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769687_at SPBC28F2.12.S1 --- 11.4893560091014 --- --- --- --- 2.19196772575378 25.1842975616455 4.12208795547485 10.7912378311157 0.665526986122131 0.366210997104645 0.466064006090164 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC28F2.12 /GEN=rpb1 /DEF=DNA-directed RNA polymerase (II subunit) (large subunit) (PMID 2011520) --- --- --- --- --- --- SPBC28F2.12 // |rpb1||DNA-directed RNA polymerase II |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.012702397043 11.4893560091014 -4.00097916244403 1.88054226667837 4.92308244520561 Max fold change at or above threshold 3 11.4893560091014 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778940_at SPCC613.04c.S1 --- 11.4832997205764 --- --- --- --- 1.71142888069153 0.977073848247528 4.1048002243042 0.149036332964897 0.780517995357513 0.870360970497131 0.303710997104645 0.916015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC613.04c /GEN=rng3 /DEF=UCS-domain protein (PMID 1085282) --- --- --- --- --- --- SPCC613.04c // |rng3||UCS-domain protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.46346847902965 -1.75158600730245 2.34968898421385 2.39846380449393 -11.4832997205764 Max fold change at or above threshold 1 11.4832997205764 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777273_at SPAP27G11.02.S1 --- 11.4779472720839 --- --- --- --- 1.15613842010498 2.06205797195435 13.2700958251953 0.597422480583191 0.725830018520355 0.696289002895355 0.466064006090164 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP27G11.02 /DEF=TPR repeat protein --- --- --- --- --- --- SPAP27G11.02 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.07180499612719 1.78357360684122 1.10105943335761 11.4779472720839 -1.93521077241081 Max fold change at or above threshold 1 11.4779472720839 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773796_at SPAC16E8.06c.S1 --- 11.4732500750162 --- --- --- --- 6.07819414138794 8.62147426605225 4.14924955368042 0.529770910739899 0.274170011281967 0.24609400331974 0.194580003619194 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16E8.06c /DEF=RNA-binding protein --- --- --- --- --- --- SPAC16E8.06c // |nop12||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.16949991829384 1.41842693166815 1.08629315824863 -1.46488999100971 -11.4732500750162 Max fold change at or above threshold 3 11.4732500750162 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774935_at SPCC24B10.21.S1 --- 11.4702866719502 --- --- --- --- 14.1940813064575 8.61438846588135 6.68539714813232 8.23338031768799 0.064453125 0.303710997104645 0.303710997104645 0.0805663987994194 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC24B10.21 /GEN=tpi1 /DEF=triosephosphate isomerase --- --- --- --- --- --- SPCC24B10.21 // |tpi1|tpi|triosephosphate isomerase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -11.4702866719502 -1.64771781104085 -1.90654937200172 -2.12314706096748 -1.72396764861742 Max fold change at or above threshold 4 11.4702866719502 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1777627_at SPAC959.05c.S1 --- 11.4617973527744 --- --- --- --- 3.38392519950867 0.994207501411438 0.354492992162704 2.3198070526123 0.780517995357513 0.828612983226776 0.962401986122131 0.798583984375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC959.05c /DEF=protein disulfide isomerase oxidoreductase family --- --- --- --- --- --- SPAC959.05c // |||protein disulfide isomerase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -11.4617973527744 -3.40364078394564 1.35653560001327 -9.54581691125651 -1.45870976454618 Max fold change at or above threshold 1 11.4617973527744 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770032_at YPL095C.S1 Acyl-coenzymeA:ethanol O-acyltransferase responsible for the major part of short-chain fatty acid ethyl ester production during fermentation 11.457112017353 2681.38696289063 276.539352416992 --- --- --- --- 283.40771484375 3247.03393554688 2115.73999023438 269.670989990234 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL095C /GEN=PNG1 /DB_XREF=GI:6325162 /SEG=NC_001148:-368066,369436 /DEF=Hypothetical ORF /NOTE=Ypl095cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.Restriction endonuclease FokI, N-terminal (recognition) do // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Restriction endonuclease FokI, N-terminal (recognition) domain // 6.59999990463257 --- S0006016 // YPL095C SGDID:S0006016, Chr XVI from 369438-368068, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017117 // cdna:Genscan chromosome:SGD1:XVI:368068:369438:-1 // ensembl // 11 // --- /// GENEFINDER00000020747 // cdna:GeneFinder chromosome:SGD1:XVI:368068:369114:-1 // ensembl // 11 // --- /// YPL095C // cdna:known chromosome:SGD1:XVI:368068:369438:-1 gene:YPL095C // ensembl // 11 // --- --- No cerevisiae_gene 1.85571823975438 11.457112017353 2.33080003411329 7.46535778463489 -1.05093883051348 Max fold change at or above threshold 4 11.457112017353 Max fold change at or above threshold -0.817054951741834 1.20831785158547 0.435179871701769 -0.826442771545406 1478.96315765381 1463.24973646059 0.989375380237229 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778176_at SPAC4D7.04c.S1 --- 11.4434301912388 --- --- --- --- 0.529712915420532 3.98795676231384 6.06173276901245 3.3897716999054 0.633789002895355 0.432372987270355 0.194580003619194 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4D7.04c /DEF=cis-prenyltransferase (predicted) --- --- --- --- --- --- SPAC4D7.04c // |||cis-prenyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 7.78413315107682 7.52852468992163 6.26593578023357 11.4434301912388 6.39926194213011 Max fold change at or above threshold 3 11.4434301912388 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773251_at SPBPB21E7.04c.S1 --- 11.4381042435763 --- --- --- --- 0.430720269680023 1.27376914024353 2.806715965271 1.17362236976624 0.932372987270355 0.696289002895355 0.665526986122131 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB21E7.04c /DEF=S-adenosylmethionine-dependent methyltransferase activity (predicted) --- --- --- --- --- --- SPBPB21E7.04c // ||SPAPB21E7.04c|S-adenosylmethionine-dependent methyltransferase activity |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 11.4381042435763 2.95730020133438 -1.96094320444226 6.51633127773641 2.72479020000174 Max fold change at or above threshold 1 11.4381042435763 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776487_at SPAC513.02.S1 --- 11.4376023525885 --- --- --- --- 1.03941524028778 11.8884181976318 3.60451245307922 0.790029406547546 0.601073980331421 0.219482004642487 0.466064006090164 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC513.02 /DEF=phosphoglycerate mutase family --- --- --- --- --- --- SPAC513.02 // |||phosphoglycerate mutase family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.82515182249775 11.4376023525885 3.29943055862507 3.46782721030841 -1.31566652035151 Max fold change at or above threshold 2 11.4376023525885 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771466_at SPCC970.09.S1 --- 11.4371456238179 --- --- --- --- 2.22287440299988 0.212193250656128 0.194355696439743 1.98260188102722 0.567627012729645 0.985840022563934 0.976073980331421 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC970.09 /GEN=sec8 /DEF=localization exocyst --- --- --- --- --- --- SPCC970.09 // |sec8||exocyst complex subunit Sec8p|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.49361457055067 -10.475707385256 -8.28631543958119 -11.4371456238179 -1.12119050439323 Max fold change at or above threshold 0 11.4371456238179 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770976_at SPAC3C7.14c.S1 --- 11.4129237162251 --- --- --- --- 9.41097831726074 2.29974675178528 1.42336201667786 3.35550880432129 0.334473013877869 0.665526986122131 0.696289002895355 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3C7.14c /GEN=obr1 /DEF=flavodoxin --- --- --- --- --- --- SPAC3C7.14c // |obr1|uhp1|ubiquitinated histone-like protein Uhp1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.53206904244386 -4.09218028461397 -11.4129237162251 -6.61179531769864 -2.80463526280757 Max fold change at or above threshold 2 11.4129237162251 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769822_at SPCC663.04.S1 --- 11.4084820172657 --- --- --- --- 6.26036691665649 0.755517542362213 3.34818243980408 0.548746705055237 0.466064006090164 0.780517995357513 0.665526986122131 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC663.04 /GEN=rpl39 /DEF=60S ribosomal protein L39 --- --- --- --- --- --- SPCC663.04 // |rpl39||60S ribosomal protein L39|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.50621828020425 -8.28619663427368 1.02271462717366 -1.86978070317543 -11.4084820172657 Max fold change at or above threshold 2 11.4084820172657 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774792_at SPAC22A12.06c.S1 --- 11.4076277709966 --- --- --- --- 0.938155889511108 7.99175119400024 10.7021331787109 6.74497604370117 0.725830018520355 0.219482004642487 0.219482004642487 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22A12.06c /DEF=DUF341 --- --- --- --- --- --- SPAC22A12.06c // |||DUF341|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.14754183766799 8.51857488009259 2.26224303421348 11.4076277709966 7.18961115003618 Max fold change at or above threshold 3 11.4076277709966 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777437_at SPBC1685.03.S1 --- 11.40234410684 --- --- --- --- 0.641386926174164 7.31331443786621 2.04155564308167 0.604811549186707 0.725830018520355 0.398925989866257 0.334473013877869 0.746337890625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1685.03 /DEF=signal peptidase activity (predicted) --- --- --- --- --- --- SPBC1685.03 // |||signal peptidase subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.31134870849789 11.40234410684 5.57001797375948 3.18303283052467 -1.06047400555866 Max fold change at or above threshold 1 11.40234410684 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770086_at SPAC4H3.04c.S1 --- 11.4006135168993 --- --- --- --- 2.46373891830444 4.93415832519531 2.96085405349731 2.55313968658447 0.466064006090164 0.398925989866257 0.567627012729645 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4H3.04c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC4H3.04c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -11.4006135168993 2.00271152456001 -2.10026067111914 1.20177265192328 1.03628662420999 Max fold change at or above threshold 3 11.4006135168993 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778005_at SPAC2F3.01.S1 --- 11.3976871951823 --- --- --- --- 8.9516773223877 5.3735499382019 0.785394191741943 2.02083683013916 0.0805663987994194 0.171387001872063 0.665526986122131 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F3.01 /DEF=involved in glycosphingolipid biosynthesis (predicted) --- --- --- --- --- --- SPAC2F3.01 // ||SPAC323.09|mannosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.56436620264066 -1.66587775778317 -2.39525578532579 -11.3976871951823 -4.42968832954774 Max fold change at or above threshold 2 11.3976871951823 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774325_at SPBC3H7.11.S1 --- 11.3886251570601 --- --- --- --- 14.5575981140137 1.68599164485931 1.27825772762299 6.83170509338379 0.018554700538516 0.466064006090164 0.303710997104645 0.0107421996071935 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3H7.11 /DEF=methyltransferase (predicted) --- --- --- --- --- --- SPBC3H7.11 // |||actin binding methyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.18217089060346 -8.63444261921501 -2.12237320696303 -11.3886251570601 -2.13088795769479 Max fold change at or above threshold 2 11.3886251570601 Max fold change at or above threshold PPAPAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1770617_at SPAC1A6.06c.S1 --- 11.382919098528 --- --- --- --- 0.796601951122284 9.06765556335449 2.5336287021637 1.81013894081116 0.850341975688934 0.398925989866257 0.665526986122131 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1A6.06c /GEN=meu31 /DEF=meiotic expression upregulated --- --- --- --- --- --- AB054315 // Schizosaccharomyces pombe mRNA for Meu31, partial cds. // gb // 11 // --- /// SPAC1A6.06c // |meu31||meiotic expression upregulated protein Meu31|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.09405711122599 11.382919098528 3.68051659427107 3.18054543877808 2.27232551748205 Max fold change at or above threshold 2 11.382919098528 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774975_at SPAC13G6.03.S1 --- 11.3820081623114 --- --- --- --- 6.73490810394287 5.09626770019531 5.9871768951416 1.71075320243835 0.149657994508743 0.5 0.194580003619194 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G6.03 /DEF=involved in glycosylphospatidylinositol modification (predicted) --- --- --- --- --- --- SPAC13G6.03 // |gpi7||phosphoethanolamine N-methyltransferase activity |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -9.61039906121854 -1.32153734853543 -11.3820081623114 -1.1248887784505 -3.93680870761693 Max fold change at or above threshold 3 11.3820081623114 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774393_at SPAC16E8.08.S1 --- 11.3764029641432 --- --- --- --- 0.8978471159935 8.65230655670166 10.2142705917358 4.85418224334717 0.780517995357513 0.326416015625 0.171387001872063 0.2392578125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16E8.08 /DEF=sequence orphan --- --- --- --- --- --- SPAC16E8.08 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.45730661289386 9.63672589974026 4.83672430647182 11.3764029641432 5.40646860348362 Max fold change at or above threshold 3 11.3764029641432 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771411_at SPBC16E9.08.S1 --- 11.3502292461692 --- --- --- --- 0.576816201210022 3.81094717979431 6.54699611663818 1.6696492433548 0.567627012729645 0.334473013877869 0.24609400331974 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16E9.08 /DEF=hypothetical protein --- --- --- --- --- --- SPBC16E9.08 // |mcp4||meiosis specific coiled-coil protein mcp4|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 7.79970839184613 6.60686570834845 -1.12553105076873 11.3502292461692 2.8945949157674 Max fold change at or above threshold 2 11.3502292461692 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769630_at SPAC227.13c.S1 --- 11.3373872939306 --- --- --- --- 9.66377544403076 3.64973044395447 1.57499718666077 1.28937757015228 0.466064006090164 0.665526986122131 0.601073980331421 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC227.13c /GEN=isu1 /DEF=involved in iron-sulfur cluster assembly (PMID 11939799) --- --- --- --- --- --- SPAC227.13c // |isu1||iron-sulfur cluster assembly scaffold protein Isu1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.05655859176963 -2.64780525368337 -11.3373872939306 -6.13574140060493 -7.49491511853228 Max fold change at or above threshold 2 11.3373872939306 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775185_at SPBC24C6.05.S1 --- 11.3225649742756 --- --- --- --- 0.656906008720398 0.282551437616348 0.406851410865784 5.46195840835571 0.962401986122131 0.5 0.904784977436066 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC24C6.05 /GEN=sec28 /DEF=coatomer (epsilon subunit) (predicted) --- --- --- --- --- --- SPBC24C6.05 // |sec28||coatomer epsilon subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 11.3225649742756 -2.32490768499417 3.58256624094211 -1.6146091451975 8.31467262568535 Max fold change at or above threshold 1 11.3225649742756 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774448_at SPAC637.13c.S1 --- 11.3216056544256 --- --- --- --- 0.333069384098053 0.409047365188599 3.25844049453735 3.77088022232056 0.932372987270355 0.919434010982513 0.696289002895355 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC637.13c /DEF=hypothetical protein --- --- --- --- --- --- SPAC637.13c // |||cytoskeletal signaling protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.22404351342176 1.22811457527474 2.25257637960929 9.78306818370942 11.3216056544256 Max fold change at or above threshold 2 11.3216056544256 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774758_at SPAC824.06.S1 --- 11.3189300202406 --- --- --- --- 0.592347681522369 1.09411442279816 1.14108562469482 1.95338487625122 0.943848013877869 0.870360970497131 0.904784977436066 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC824.06 /GEN=tim14 /DEF=TIM23 translocase complex --- --- --- --- --- --- SPAC824.06 // |tim14||TIM23 translocase complex Tim14|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 10.6101943611079 1.84708146402501 11.3189300202406 1.92637813954495 3.29769987658414 Max fold change at or above threshold 0 11.3189300202406 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779721_at SPBC1703.04.S1 --- 11.3148475297649 --- --- --- --- 0.50113445520401 1.70481514930725 1.98750138282776 0.634653389453888 0.780517995357513 0.805419981479645 0.303710997104645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1703.04 /GEN=mlh1 /DEF=MutL family --- --- --- --- --- --- D89212 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1173. // gb // 11 // --- /// SPBC1703.04 // |mlh1||MutL family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 11.3148475297649 3.40191166582874 6.09421834257671 3.96600425731784 1.26643335508735 Max fold change at or above threshold 0 11.3148475297649 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778285_at SPBC1711.15c.S1 --- 11.3125890674428 --- --- --- --- 0.397885978221893 4.50112056732178 0.11952119320631 1.21517670154572 0.753906011581421 0.357666015625 0.888427972793579 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1711.15c /DEF=dubious --- --- --- --- --- --- SPBC1711.15c // |||dubious|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.42120924339902 11.3125890674428 -2.73050465353093 -3.3289993811816 3.05408274746499 Max fold change at or above threshold 1 11.3125890674428 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776677_at SPBC16E9.01c.S1 --- 11.3065539952739 --- --- --- --- 0.611567378044128 6.914719581604 4.15544700622559 0.889316976070404 0.533936023712158 0.366210997104645 0.303710997104645 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16E9.01c /DEF=sequence orphan --- --- --- --- --- --- SPBC16E9.01c // ||SPBP16F5.09c|sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.51617939187154 11.3065539952739 6.05321976788815 6.79474928750327 1.454160257721 Max fold change at or above threshold 2 11.3065539952739 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772970_at YPR045C.S1 Hypothetical protein 11.3024991818643 320.406028747559 43.7737560272217 --- --- 5634 // nucleus // inferred from direct assay --- 37.4528999328613 217.500686645508 423.311370849609 50.094612121582 0.00292969006113708 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR045C /GEN=RPL43A /DB_XREF=GI:6325302 /SEG=NC_001148:-655135,656547 /DEF=Hypothetical ORF /NOTE=Ypr045cp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006249 // YPR045C SGDID:S0006249, Chr XVI from 656549-655137, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017219 // cdna:Genscan chromosome:SGD1:XVI:655137:656549:-1 // ensembl // 11 // --- /// YPR045C // cdna:known chromosome:SGD1:XVI:655137:656549:-1 gene:YPR045C // ensembl // 11 // --- --- No cerevisiae_gene 5.76573583377478 5.80731230519941 1.72962765631842 11.3024991818643 1.33753627119348 Max fold change at or above threshold 4 11.3024991818643 Max fold change at or above threshold -0.801134355826634 0.196137954515372 1.33610918258089 -0.731112781269624 182.08989238739 180.54024447034 0.991489654385904 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776307_at SPCC16A11.14.S1 --- 11.2999044077461 --- --- --- --- 0.484389334917068 1.75819027423859 5.47355318069458 0.574442088603973 0.981445014476776 0.753906011581421 0.398925989866257 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16A11.14 /GEN=sfh1 /DEF=involved in transcriptional regulation (predicted) --- --- --- --- --- --- SPCC16A11.14 // |sfh1||zinc finger protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.71587021240657 3.62970475916775 9.73979452556691 11.2999044077461 1.18590986050988 Max fold change at or above threshold 1 11.2999044077461 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777196_at YKR097W.S1 Phosphoenolpyruvate carboxykinase, key enzyme in gluconeogenesis, catalyzes early reaction in carbohydrate biosynthesis, glucose represses transcription and accelerates mRNA degradation, regulated by Mcm1p and Cat8p, located in the cytosol 11.2990911730344 8107.24658203125 969.876129150391 PCK1 6094 // gluconeogenesis // inferred from expression pattern 5829 // cytosol // inferred from direct assay 4612 // phosphoenolpyruvate carboxykinase (ATP) activity // inferred from mutant phenotype 928.757202148438 10494.1123046875 5720.380859375 1010.99505615234 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR097W /GEN=PCK1 /DB_XREF=GI:6322950 /SEG=NC_001143:+630788,632437 /DEF=phosphoenolpyruvate carboxylkinase /NOTE=Pck1p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: phosphoenolpyruvate carboxykinase (ATP) activity [goid GO:0004612] [evidence IMP] [pmid 2689220]; go_process: gluconeogenesis [goid GO:0006094] [evidence TAS] --- --- --- --- --- --- S0001805 // PCK1 SGDID:S0001805, Chr XI from 630790-632439, Verified ORF // sgd // 11 // --- /// U24234 // Saccharomyces cerevisiae phosphoenolpyruvate carboxykinase (pck) gene, complete cds. // gb // 9 // --- /// GENSCAN00000018498 // cdna:Genscan chromosome:SGD1:XI:630790:632439:1 // ensembl // 11 // --- /// GENEFINDER00000023036 // cdna:GeneFinder chromosome:SGD1:XI:630805:632439:1 // ensembl // 11 // --- /// YKR097W // cdna:known chromosome:SGD1:XI:630790:632439:1 gene:YKR097W // ensembl // 11 // --- --- No cerevisiae_gene -1.05002379962989 11.2990911730344 -1.20709060597753 6.15917792738769 1.088546127894 Max fold change at or above threshold 4 11.2990911730344 Max fold change at or above threshold -0.791884665162614 1.30647239260527 0.259256375763301 -0.773844103205957 4538.56135559082 4558.49735731542 1.00439258173739 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773367_at SPBC1289.06c.S1 --- 11.2968421926652 --- --- --- --- 1.94627130031586 6.10902309417725 2.32100224494934 4.18252468109131 0.567627012729645 0.129638999700546 0.432372987270355 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1289.06c /DEF=sequence orphan --- --- --- --- --- --- SPBC1289.06c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.17073817676135 3.13883428953909 -11.2968421926652 1.1925378772079 2.14899365798208 Max fold change at or above threshold 2 11.2968421926652 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770915_at SPBP35G2.12.S1 --- 11.270731470665 --- --- --- --- 3.14335894584656 1.80608296394348 1.39554345607758 0.278895735740662 0.567627012729645 0.601073980331421 0.753906011581421 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP35G2.12 /DEF=nucleoside diphosphate-sugar hydrolase (predicted) --- --- --- --- --- --- SPBP35G2.12 // |||nucleoside diphosphate-sugar hydrolase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.17774559448152 -1.74042887763207 -7.59948221254849 -2.25242641650266 -11.270731470665 Max fold change at or above threshold 1 11.270731470665 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775867_at SPAC644.16.S1 --- 11.2676137326616 --- --- --- --- 9.73615741729736 6.65493869781494 13.2935590744019 1.99819397926331 0.014160200022161 0.0461426004767418 0.091796875 0.366210997104645 P P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC644.16 /DEF=RNA-binding protein --- --- --- --- --- --- SPAC644.16 // |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -11.2676137326616 -1.46299731062799 -1.68603370481639 1.36538045808343 -4.87247860735067 Max fold change at or above threshold 3 11.2676137326616 Max fold change at or above threshold PAPAAA No 4 0 PPAA 2 2 0 No No 1 < x = 2
AFFX-TrpnX-3_at AFFX-TrpnX-3 --- 11.2644469869655 --- --- --- --- 2.47495889663696 0.939870476722717 0.875001013278961 0.219714194536209 0.396910756826401 0.804733574390411 0.712256908416748 0.544665038585663 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=trpC, trpF /DB_XREF=gb:K01391.1 /NOTE=SIF corresponding to nucleotides 3790-4368 of gb:K01391.1, not 100% identical /DEF=B.subtilis tryptophan (trp) operon, complete cds. --- --- --- --- --- --- K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-TrpnX-3 // --- // gb // --- // --- /// AFFX-TrpnX-3 // B. subtilis /GEN=trpC, trpF /DB_XREF=gb:K01391.1 /NOTE=SIF corresponding to nucleotides 3790-4368 of gb:K01391.1, not 100% identical /DEF=B.subtilis tryptophan (trp) operon, complete cds. // affx // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// K01391 // Bacillus subtilis /REF=K01391 /DEF=B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 /LEN=2609 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-TrpnX-3 // --- // unknown // --- // --- /// AFFX-TrpnX-3 // --- // unknown // --- // --- /// AFFX-TrpnX-3 // --- // unknown // --- // --- /// AFFX-TrpnX-3 // --- // unknown // --- // --- /// AFFX-TrpnX-3 // B. subtilis /GEN=trpC, trpF /DB_XREF=gb:K01391.1 /NOTE=SIF corresponding to nucleotides 3790-4368 of gb:K01391.1, not 100% identical /DEF=B.subtilis tryptophan (trp) operon, complete cds. // affx // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-TrpnX-3 // --- // unknown // --- // --- /// AFFX-TrpnX-3 // --- // affx // --- // --- /// AFFX-TrpnX-3 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-TrpnX-3 // --- // affx // --- // --- /// AFFX-TrpnX-3 // --- // affx // --- // --- /// AFFX-TrpnX-3 // --- // affx // --- // --- /// AFFX-TrpnX-3 // --- // affx // --- // --- /// AFFX-TrpnX-3 // --- // affx // --- // --- /// AFFX-TrpnX-3 // --- // affx // --- // --- /// AFFX-TrpnX-3 // --- // affx // --- // --- /// AFFX-TrpnX-3 // --- // affx // --- // --- /// AFFX-TrpnX-3 // --- // affx // --- // --- /// AFFX-TrpnX-3 // --- // affx // --- // --- /// AFFX-TrpnX-3 // --- // affx // --- // --- 939004 // gb // 4 // Cross Hyb Matching Probes /// 50812173 // gb // 18 // Negative Strand Matching Probes /// AK031408 // gb // 1 // Negative Strand Matching Probes AFFX_control No -1.00196015181621 -2.63329784042906 -3.17676327418022 -2.82852117777824 -11.2644469869655 Max fold change at or above threshold 0 11.2644469869655 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773920_at SPBC1105.09.S1 --- 11.2581236069302 --- --- --- --- 0.595000386238098 6.6985878944397 2.69544219970703 2.56515455245972 0.904784977436066 0.5 0.696289002895355 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1105.09 /GEN=ubc15 /DEF=ubiquitin conjugating enzyme --- --- --- --- --- --- SPBC1105.09 // |ubc15||ubiquitin conjugating enzyme|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.67882894479812 11.2581236069302 1.03413460623394 4.53015201678947 4.31118132322225 Max fold change at or above threshold 3 11.2581236069302 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Sp-TFIID-5_at AFFX-r2-Sp-TFIID-5 --- 11.2560852657813 --- --- --- --- 3.14926242828369 1.27032947540283 5.23465728759766 0.671327888965607 0.696289002895355 0.805419981479645 0.398925989866257 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=tfIId transcription initiation factor (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPAC29E6.08 // |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- AFFX_control No -11.2560852657813 -2.47909104626974 -3.38161078677643 1.66218516455946 -4.691094292442 Max fold change at or above threshold 2 11.2560852657813 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773338_at SPBC1718.01.S1 --- 11.2472826646639 --- --- --- --- 1.48911833763123 0.637906193733215 1.9682070016861 0.132398054003716 0.633789002895355 0.962401986122131 0.601073980331421 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1718.01 /GEN=pop1 /DEF=F-box protein --- --- --- --- --- --- SPBC1718.01 // |pop1|ste16, SPBC2G2.18|F-box protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.18601201143322 -2.33438451023099 -7.89353709355899 1.3217263879894 -11.2472826646639 Max fold change at or above threshold 0 11.2472826646639 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774118_at SPBC8D2.20c.S1 --- 11.2392440419352 --- --- --- --- 4.74924230575562 8.84349250793457 1.2112056016922 0.567705273628235 0.466064006090164 0.334473013877869 0.805419981479645 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8D2.20c /GEN=sec31 /DEF=COPII-coated vesicle component (predicted) --- --- --- --- --- --- SPBC8D2.20c // |sec31||COPII-coated vesicle component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -11.2392440419352 1.86208492609803 -4.7477475641588 -3.92108680732681 -8.36568291043512 Max fold change at or above threshold 2 11.2392440419352 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780019_at SPBC21C3.13.S1 --- 11.2297676947709 --- --- --- --- 5.84954595565796 11.1003704071045 2.42444229125977 0.520896434783936 0.303710997104645 0.274170011281967 0.533936023712158 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21C3.13 /GEN=rps1901 /DEF=40S ribosomal protein (S19.1S19A subunit) --- --- --- --- --- --- AB000915 // Fission yeast mRNA for ribosomal protein S16 homolog, partial cds. // gb // 10 // --- /// SPBC21C3.13 // |rps1901|rps19-1|40S ribosomal protein S19|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.01490347883244 1.89764649961724 -1.9424814350189 -2.41273878811051 -11.2297676947709 Max fold change at or above threshold 2 11.2297676947709 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777873_at SPCC1795.01c.S1 --- 11.2253080676948 --- --- --- --- 0.610247433185577 1.7003458738327 0.708338856697083 3.65276336669922 0.533936023712158 0.850341975688934 0.805419981479645 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1795.01c /GEN=mad3 /DEF=involved in spindle assembly checkpoint --- --- --- --- --- --- SPCC1795.01c // |mad3|SPCC895.02|mitotic spindle checkpoint component Mad3|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.23156123052517 2.78632204146547 11.2253080676948 1.1607404114745 5.98570869463765 Max fold change at or above threshold 1 11.2253080676948 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775812_at SPAC6B12.14c.S1 --- 11.2247629942915 --- --- --- --- 3.58090853691101 0.987532138824463 3.59047889709473 0.319018632173538 0.567627012729645 0.753906011581421 0.601073980331421 0.985840022563934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6B12.14c /DEF=dubious --- --- --- --- --- --- SPAC6B12.14c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -11.0223377011281 -3.62611847870961 -5.85443012255897 1.00267260671002 -11.2247629942915 Max fold change at or above threshold 2 11.2247629942915 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770068_at SPAP19A11.05c.S1 --- 11.2218878302097 --- --- --- --- 0.540288925170898 5.0339617729187 3.85608053207397 5.22425937652588 0.780517995357513 0.725830018520355 0.398925989866257 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP19A11.05c /GEN=mrp7 /DEF=mitochondrial ribosomal protein subunit yml5yml7 --- --- --- --- --- --- SPAP19A11.05c // |mrp7||mitochondrial ribosomal protein subunit L27|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 11.2218878302097 9.31716631305447 9.24264121835583 7.13707120843586 9.66938083151232 Max fold change at or above threshold 3 11.2218878302097 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1775787_at SPCC1020.03.S1 --- 11.2202640762016 --- --- --- --- 0.764913201332092 2.33337426185608 8.58252811431885 1.4885960817337 0.850341975688934 0.888427972793579 0.398925989866257 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1020.03 /DEF=CDF metal cation transporter (predicted) --- --- --- --- --- --- SPCC1020.03 // |||CDF metal cation transporter|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.7429030864995 3.05050855154875 2.20681449568671 11.2202640762016 1.94609803980546 Max fold change at or above threshold 1 11.2202640762016 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776522_at SPBC2G2.16.S1 --- 11.2089394665933 --- --- --- --- 0.652708470821381 5.75132274627686 3.97759246826172 5.23067808151245 0.850341975688934 0.0771484375 0.12451171875 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G2.16 /DEF=mannose-6-phosphate isomerase (predicted) --- --- --- --- --- --- SPBC2G2.16 // |||mannose-6-phosphate isomerase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.37486488221546 8.81147250783996 11.2089394665933 6.09398015511618 8.01380450131139 Max fold change at or above threshold 3 11.2089394665933 Max fold change at or above threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1772555_at SPBC543.03c.S1 --- 11.1972375007043 --- --- --- --- 4.5365834236145 0.607406556606293 0.641110837459564 1.79758036136627 0.334473013877869 0.962401986122131 0.962401986122131 0.6884765625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC543.03c /GEN=pku80 /DEF=Ku domain protein --- --- --- --- --- --- SPBC543.03c // |pku80||Ku domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.48498479080984 -7.46877585411877 -11.1972375007043 -7.07612967765598 -2.52371661435287 Max fold change at or above threshold 1 11.1972375007043 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773488_at SPBC15D4.06.S1 --- 11.176657546542 --- --- --- --- 0.351425141096115 3.92775845527649 0.307816505432129 3.02101874351501 0.904784977436066 0.5 0.888427972793579 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC15D4.06 /DEF=N-acetyltransferase (predicted) --- --- --- --- --- --- SPBC15D4.06 // |||NatC N-acetyltransferase complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 8.23191502010156 11.176657546542 -1.21845397248033 -1.14167088149729 8.59647870978236 Max fold change at or above threshold 2 11.176657546542 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776376_at SPAC1834.02.S1 --- 11.1701465121051 --- --- --- --- 3.53322625160217 0.316309750080109 3.99336338043213 0.63970410823822 0.567627012729645 0.976073980331421 0.398925989866257 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1834.02 /GEN=aro1 /DEF=pentafunctional aromatic polypeptide --- --- --- --- --- --- SPAC1834.02 // |aro1||pentafunctional aromatic polypeptide Aro1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.26466350752475 -11.1701465121051 -1.78972575434373 1.13023143610498 -5.52321957308179 Max fold change at or above threshold 2 11.1701465121051 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771370_at SPAC1F5.04c.S1 --- 11.1641771704 --- --- --- --- 4.76547384262085 8.89140224456787 1.00181949138641 0.426854014396667 0.219482004642487 0.0805663987994194 0.696289002895355 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F5.04c /GEN=cdc12 /DEF=formin --- --- --- --- --- --- SPAC1F5.04c // |cdc12||formin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.02527889342805 1.86579604425609 -3.11326157159241 -4.75681885169346 -11.1641771704 Max fold change at or above threshold 2 11.1641771704 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778247_at SPBC685.07c.S1 --- 11.1479641075035 --- --- --- --- 0.888198554515839 7.07056522369385 9.9016056060791 6.29179000854492 0.780517995357513 0.303710997104645 0.0952147990465164 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC685.07c /GEN=rpl2701 /DEF=60S ribosomal protein L27 --- --- --- --- --- --- AB015354 // Schizosaccharomyces pombe mRNA for ribosomal protein L27 homolog, partial cds. // gb // 11 // --- /// SPBC685.07c // |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- U97385 // gb // 4 // Cross Hyb Matching Probes No No 7.59168564182704 7.96056826229361 1.21555099926524 11.1479641075035 7.08376519704494 Max fold change at or above threshold 3 11.1479641075035 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776895_at SPAC2E1P5.04c.S1 --- 11.1469229214443 --- --- --- --- 7.41254186630249 0.664985477924347 3.00110745429993 2.85075116157532 0.111571997404099 0.601073980331421 0.111571997404099 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2E1P5.04c /GEN=cwg2 /DEF=geranylgeranyltransferase (beta subunit) --- --- --- --- --- --- SPAC2E1P5.04c // |cwg2|orb7|geranylgeranyltransferase I beta subunit Cwg2 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.55854614852095 -11.1469229214443 -6.74867500307962 -2.46993550853434 -2.60020655826247 Max fold change at or above threshold 3 11.1469229214443 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778521_at SPAC227.02c.S1 --- 11.1439484983206 --- --- --- --- 0.11376940459013 0.465405195951462 0.860182881355286 0.231159269809723 0.999267995357513 0.995850026607513 0.904784977436066 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC227.02c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC227.02c // |||pre-rRNA processing protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.4647872925711 4.09077640538024 11.1439484983206 7.56075752047938 2.03182279666934 Max fold change at or above threshold 0 11.1439484983206 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775854_s_at YHL009W-A.S1 TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition 11.1416996736027 34.096061706543 7.53044962882996 --- 6319 // Ty element transposition // inferred from sequence similarity 943 // retrotransposon nucleocapsid // inferred from sequence similarity /// 5739 // mitochondrion // inferred from direct assay 3723 // RNA binding // inferred from sequence similarity /// 5515 // protein binding // inferred from sequence similarity /// 3887 // DNA-directed DNA polymerase activity // inferred from sequence similarity /// 3964 // RNA-directed DNA polymerase activity // inferred from sequence similarity /// 4540 // ribonuclease activity // inferred from sequence similarity /// 8233 // peptidase activity // inferred from sequence similarity 3.75935983657837 26.3064651489258 41.8856582641602 11.3015394210815 0.303710997104645 0.00805663969367743 0.000732421991415322 0.014160200022161 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL009W-A /GEN=YAP3 /DB_XREF=GI:7839179 /SEG=NC_001140:+85904,87145 /DEF=TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /NOTE=Yhl009w-ap; go_component: retrotransposon nucleocapsid [goid GO:0000943] [evidence ISS] [pmid 9582191]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 9582191]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 9582191]; go_process: Ty element transposition [goid GO:0006319] [evidence ISS] [pmid 9582191] --- --- --- --- --- --- S0007371 // YHL009W-A SGDID:S0007371, Chr VIII from 85904-87145, Ty ORF // sgd // 10 // --- /// S0007372 // YHL009W-B SGDID:S0007372, Chr VIII from 85904-86989,86991-91313, one base removed to allow translational frameshift, Ty ORF // sgd // 10 // --- /// S0003649 // YJL113W SGDID:S0003649, Chr X from 197834-198919,198921-203246, one base removed to allow translational frameshift, Ty ORF // sgd // 10 // --- /// S0003650 // YJL114W SGDID:S0003650, Chr X from 197834-199078, Ty ORF // sgd // 10 // --- /// S0007388 // YPL060C-A SGDID:S0007388, Chr XVI from 442739-439425, reverse complement, Pseudogene Ty ORF // sgd // 9 // --- /// GENSCAN00000024048 // cdna:Genscan chromosome:SGD1:X:197834:199078:1 // ensembl // 10 // --- /// GENSCAN00000017143 // cdna:Genscan chromosome:SGD1:XVI:439425:442739:-1 // ensembl // 9 // --- /// GENEFINDER00000020757 // cdna:GeneFinder chromosome:SGD1:XVI:439425:442739:-1 // ensembl // 9 // --- /// YHL009W-B // cdna:known chromosome:SGD1:VIII:85904:91313:1 gene:YHL009W-B // ensembl // 10 // --- /// YHL009W-A // cdna:known chromosome:SGD1:VIII:85904:87145:1 gene:YHL009W-A // ensembl // 10 // --- /// YJL113W // cdna:known chromosome:SGD1:X:197834:203246:1 gene:YJL113W // ensembl // 10 // --- /// YJL114W // cdna:known chromosome:SGD1:X:197834:199078:1 gene:YJL114W // ensembl // 10 // --- /// YPL060C-A // cdna:pseudogene chromosome:SGD1:XVI:439425:442739:-1 gene:YPL060C-A // ensembl // 9 // --- --- No cerevisiae_gene 4.12671111900901 6.99759168913954 3.57738640876546 11.1416996736027 3.00624040059113 Max fold change at or above threshold 4 11.1416996736027 Max fold change at or above threshold -1.00987288256798 0.325288916286787 1.24783499110603 -0.563251024824834 20.8132556676865 16.8871707771202 0.811366133523179 APPPPP Called_P_>2EXP 3 0 APPP 1 3 0 Yes Yes 2 < x = 3
1776110_at SPAC16.04.S1 --- 11.141563382614 --- --- --- --- 5.99154710769653 5.36751842498779 3.30248332023621 2.99946928024292 0.366210997104645 0.633789002895355 0.5 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16.04 /DEF=zinc finger protein --- --- --- --- --- --- SPAC16.04 // |||dihydrouridine synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.60339334337219 -1.11626018455822 -11.141563382614 -1.8142550701113 -1.99753574646088 Max fold change at or above threshold 4 11.141563382614 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770028_at SPAC3A12.02.S1 --- 11.1394498277648 --- --- --- --- 0.474144101142883 1.10240042209625 5.28170442581177 0.814803540706635 0.805419981479645 0.753906011581421 0.432372987270355 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A12.02 /DEF=inorganic pyrophosphatase --- --- --- --- --- --- SPAC3A12.02 // |||inorganic pyrophosphatase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.02290589642243 2.32503245203096 -1.30707157510247 11.1394498277648 1.71847237736929 Max fold change at or above threshold 1 11.1394498277648 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780051_at SPAC1952.11c.S1 --- 11.1388408576134 --- --- --- --- 3.45166802406311 2.0037522315979 2.74016451835632 0.382029443979263 0.601073980331421 0.533936023712158 0.533936023712158 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1952.11c /GEN=ure2 /DEF=urease (PMID 9301025) --- --- --- --- --- --- SPAC1952.11c // |ure2||urease |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.73913194839271 -1.72260221080855 -11.1388408576134 -1.25965722165236 -9.03508375718409 Max fold change at or above threshold 2 11.1388408576134 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776437_at SPBC211.03c.S1 --- 11.1368589184575 --- --- --- --- 4.59189510345459 4.46937894821167 0.619714081287384 0.992631494998932 0.5 0.633789002895355 0.932372987270355 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC211.03c /DEF=Sec7 domain --- --- --- --- --- --- SPBC211.03c // |||guanyl-nucleotide exchange factor activity|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -11.1368589184575 -1.02741234445827 -2.74804050304777 -7.40969947611237 -4.62598167254358 Max fold change at or above threshold 2 11.1368589184575 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776861_at SPBC651.08c.S1 --- 11.1349325968252 --- --- --- --- 0.660032868385315 7.00399494171143 7.34942150115967 1.08739984035492 0.747314453125 0.366210997104645 0.0676269978284836 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC651.08c /GEN=rpc1 /DEF=localization DNA-directed RNA polymerase III complex (large subunit) --- --- --- --- --- --- SPBC651.08c // |rpc1||DNA-directed RNA polymerase III complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 7.36500012552474 10.6115850849152 2.69542477663369 11.1349325968252 1.64749346955266 Max fold change at or above threshold 2 11.1349325968252 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771477_at SPAC1610.04.S1 --- 11.1292579866112 --- --- --- --- 3.98430299758911 1.61399877071381 1.42185056209564 0.358002573251724 0.780517995357513 0.888427972793579 0.828612983226776 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1610.04 /DEF=hypothetical protein --- --- --- --- --- --- SPAC1610.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.61268627877366 -2.46859109801367 -10.5310887663392 -2.80219532474405 -11.1292579866112 Max fold change at or above threshold 1 11.1292579866112 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777262_at SPCC736.03c.S1 --- 11.1223606863667 --- --- --- --- 0.702354669570923 0.891569375991821 2.69534659385681 0.192090928554535 0.953857004642487 0.870360970497131 0.780517995357513 0.9677734375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC736.03c /DEF=phenylalanyl-tRNA synthetase --- --- --- --- --- --- SPCC736.03c // |||phenylalanyl-tRNA synthetase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.20841297822151 1.26940051033831 11.1223606863667 3.83758620912057 -3.65636563296389 Max fold change at or above threshold 1 11.1223606863667 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779748_at SPAC23C11.11.S1 --- 11.1208458250235 --- --- --- --- 8.39023971557617 4.55351591110229 6.56997537612915 5.07544660568237 0.366210997104645 0.466064006090164 0.194580003619194 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C11.11 /GEN=cka1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- X74275 // S.pombe mRNA for casein kinase II alpha subunit. // gb // 10 // --- /// L29508 // Schizosaccharomyces pombe casein kinase II catalytic subunit mRNA, complete cds. // gb // 11 // --- /// SPAC23C11.11 // |cka1|orb5|CK2 family |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -11.1208458250235 -1.8425849122695 -3.18407939312223 -1.2770580154776 -1.65310373006045 Max fold change at or above threshold 4 11.1208458250235 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-Scv2-r2-Bs-dap-3_at AFFX-Scv2-r2-Bs-dap-3 --- 11.1202815265524 --- --- --- --- 0.482542484998703 1.00050365924835 5.36600828170776 3.04474306106567 0.943848013877869 0.981445014476776 0.665526986122131 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2634-3089 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. --- --- --- --- --- --- AFFX-Scv2-r2-Bs-dap-3 // --- // affx // --- // --- --- AFFX_control No 3.23181157647569 2.07340014683068 1.58595749272193 11.1202815265524 6.30979272441443 Max fold change at or above threshold 2 11.1202815265524 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774368_at SPAC3H1.08c.S1 --- 11.119447023109 --- --- --- --- 1.29582679271698 11.9913740158081 14.4088773727417 0.847235441207886 0.805419981479645 0.303710997104645 0.303710997104645 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H1.08c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC3H1.08c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.24302161460415 9.25384016074062 6.15975462418618 11.119447023109 -1.52947661262795 Max fold change at or above threshold 2 11.119447023109 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779084_at SPCC1795.02c.S1 --- 11.1145415804797 --- --- --- --- 12.6007719039917 9.07666683197021 1.8098052740097 3.671138048172 0.171387001872063 0.334473013877869 0.601073980331421 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1795.02c /DEF=CaCA protoncalcium exchanger --- --- --- --- --- --- SPCC1795.02c // ||SPCC895.01|CaCA proton/calcium exchanger|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -11.1145415804797 -1.38825982458767 -1.75971246064896 -6.96250148286623 -3.43238846881994 Max fold change at or above threshold 3 11.1145415804797 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771277_at SPAC17C9.14.S1 --- 11.1099638559667 --- --- --- --- 6.26514959335327 2.17408728599548 11.1646413803101 0.563921689987183 0.466064006090164 0.567627012729645 0.0952147990465164 0.65771484375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17C9.14 /DEF=involved in peroxisome organization and biogenesis (predicted) --- --- --- --- --- --- SPAC17C9.14 // |||Pex19 protein family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.7049624142 -2.88173783716533 1.0919741736244 1.78202311276888 -11.1099638559667 Max fold change at or above threshold 2 11.1099638559667 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778986_at SPCC191.05c.S1 --- 11.106484735476 --- --- --- --- 6.49129629135132 1.25223159790039 7.58161592483521 0.584460020065308 0.303710997104645 0.888427972793579 0.366210997104645 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC191.05c /DEF=nucleoside 2-deoxyribosyltransferase (predicted) --- --- --- --- --- --- SPCC191.05c // |||nucleoside 2-deoxyribosyltransferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.84379407381117 -5.18378253849786 -8.42731761355894 1.16796639446832 -11.106484735476 Max fold change at or above threshold 2 11.106484735476 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775647_at YHR163W.S1 Glucose-6-phosphate dehydrogenase; weak multicopy suppressor of los1-1 mutation; homologous to Sol2p and Sol1p 11.0907401369339 132.076057434082 1472.28698730469 SOL3 8033 // tRNA processing // inferred from genetic interaction /// 8033 // tRNA processing // inferred from mutant phenotype /// 9051 // pentose-phosphate shunt, oxidative branch // inferred from expression pattern /// 9051 // pentose-phosphate shunt, oxidative branch // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 17057 // 6-phosphogluconolactonase activity // inferred from sequence similarity /// 17057 // 6-phosphogluconolactonase activity // inferred from direct assay 1425.24438476563 128.507598876953 135.644515991211 1519.32958984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR163W /GEN=SOL3 /DB_XREF=GI:6321957 /SEG=NC_001140:+423631,424473 /DEF=weak multicopy suppressor of los1-1 /NOTE=Sol3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: 6-phosphogluconolactonase activity [goid GO:0017057] [evidence ISS] [pmid 10518023]; go_process: pentose-phosphate shunt, oxidative branch [goid GO:0009051] [evidence IEP,ISS] [pmid 12570990]; go_process: tRNA processing [goid GO:0008033] [evidence IGI,IMP] [pmid 8725220] --- --- --- ec // 6PGL_HUMAN // (O95336) 6-phosphogluconolactonase (EC 3.1.1.31) (6PGL) // 1.0E-101 --- --- S0001206 // SOL3 SGDID:S0001206, Chr VIII from 423632-424474, Verified ORF // sgd // 11 // --- /// GENSCAN00000016689 // cdna:Genscan chromosome:SGD1:VIII:423725:424474:1 // ensembl // 11 // --- /// GENEFINDER00000020193 // cdna:GeneFinder chromosome:SGD1:VIII:423725:424474:1 // ensembl // 11 // --- /// YHR163W // cdna:known chromosome:SGD1:VIII:423632:424474:1 gene:YHR163W // ensembl // 11 // --- --- No cerevisiae_gene 1.12528638780253 -11.0907401369339 -1.08936279714162 -10.5072024058678 1.06601338414927 Max fold change at or above threshold 4 11.0907401369339 Max fold change at or above threshold 0.804232912611633 -0.869560319414881 -0.860348177295235 0.925675584098483 802.181522369385 774.729375813447 0.965778136505995 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777082_at SPBC1685.13.S1 --- 11.0900211566141 --- --- --- --- 4.82703828811646 0.803413093090057 2.26578378677368 0.773025691509247 0.633789002895355 0.981445014476776 0.850341975688934 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1685.13 /DEF=involved in non-classical protein export pathway (predicted) --- --- --- --- --- --- SPBC1685.13 // |||non classical exprot pathway prtoein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.58790479873171 -6.00816482782336 -11.0900211566141 -2.13040552072703 -6.24434393466561 Max fold change at or above threshold 1 11.0900211566141 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776130_at SPAC8C9.15c.S1 --- 11.0879882656311 --- --- --- --- 0.895534932613373 9.92968082427979 0.991127789020538 0.457606554031372 0.828612983226776 0.0375977009534836 0.665526986122131 0.567627012729645 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8C9.15c /GEN=tif225 /DEF=translation initiation factor --- --- --- --- --- --- SPAC8C9.15c // |tif225||translation initiation factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.00212238835514 11.0879882656311 -1.18009531978879 1.10674386104426 -1.95699761011722 Max fold change at or above threshold 1 11.0879882656311 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1773372_at SPAC222.09.S1 --- 11.0745151062054 --- --- --- --- 0.769523143768311 1.32250964641571 0.426098644733429 1.35364556312561 0.904784977436066 0.805419981479645 0.870360970497131 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC222.09 /GEN=seb1 /DEF=involved in RNA elongation from Pol II promoter (regulation) (predicted) --- --- --- --- --- --- SPAC222.09 // |seb1||RNA-binding protein involved in processing of transcripts |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- AB016219 // gb // 3 // Cross Hyb Matching Probes No No -2.60169733091605 1.71860931945394 11.0745151062054 -1.80597416415096 1.75907063236186 Max fold change at or above threshold 0 11.0745151062054 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778301_at SPAC4A8.15c.S1 --- 11.0742889580009 --- --- --- --- 4.93620157241821 12.8545694351196 0.777172684669495 0.445735305547714 0.5 0.149657994508743 0.490234375 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4A8.15c /GEN=cdc3 /DEF=profilin --- --- --- --- --- --- SPAC4A8.15c // |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.29219631248753 2.60414191894969 -5.49924751637907 -6.3514861880631 -11.0742889580009 Max fold change at or above threshold 2 11.0742889580009 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774123_at SPAC17G6.16c.S1 --- 11.0737003605141 --- --- --- --- 1.91872143745422 2.72079753875732 3.99207258224487 0.17326831817627 0.633789002895355 0.533936023712158 0.601073980331421 0.989257991313934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G6.16c /GEN=ysh1 /DEF=CPF complex (PMID 14617822) --- --- --- --- --- --- SPAC17G6.16c // |ysh1||mRNA cleavage and polyadenylation specificity factor complex subunit Ysh1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.1347121589279 1.41802634069034 -2.38799772912207 2.08058997221691 -11.0737003605141 Max fold change at or above threshold 2 11.0737003605141 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778734_at SPAC1250.02.S1 --- 11.0685441527646 --- --- --- --- 0.213914796710014 0.496906489133835 0.343121200799942 1.31552875041962 0.7470703125 0.904784977436066 0.696289002895355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1250.02 /DEF=sequence orphan --- --- --- --- --- --- SPAC1250.02 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 11.0685441527646 2.32291780080762 1.82745843967701 1.60400872719937 6.14977912071676 Max fold change at or above threshold 0 11.0685441527646 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-Scv2-r2-Bs-dap-5_at AFFX-Scv2-r2-Bs-dap-5 --- 11.0681285726962 --- --- --- --- 3.47933888435364 0.814140379428864 1.18543064594269 0.369194626808167 0.334473013877869 0.870360970497131 0.725830018520355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1439-1846 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. --- --- --- --- --- --- AFFX-Scv2-r2-Bs-dap-5 // --- // affx // --- // --- --- AFFX_control No -11.0681285726962 -4.27363507850387 -2.70746514604099 -2.93508430565904 -9.42413196647497 Max fold change at or above threshold 1 11.0681285726962 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770135_at SPBC725.06c.S1 --- 11.064775900557 --- --- --- --- 4.10882759094238 0.371343046426773 4.39832210540771 1.53698194026947 0.466064006090164 0.943848013877869 0.366210997104645 0.6572265625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC725.06c /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPBC725.06c // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.93982881816094 -11.064775900557 -1.31979641940397 1.07045671984473 -2.67330895912935 Max fold change at or above threshold 2 11.064775900557 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771455_at SPBC26H8.09c.S1 --- 11.0644292130144 --- --- --- --- 0.722406387329102 1.98136579990387 7.99301433563232 3.3720805644989 0.919434010982513 0.753906011581421 0.274170011281967 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC26H8.09c /DEF=sequence orphan --- --- --- --- --- --- SPBC26H8.09c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.54818494570283 2.74273017882555 6.37040691856612 11.0644292130144 4.66784433754281 Max fold change at or above threshold 2 11.0644292130144 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772271_at SPAC732.01.S1 --- 11.0598265148606 --- --- --- --- 1.15621614456177 4.00690364837646 3.29249238967896 3.34526562690735 0.943848013877869 0.725830018520355 0.567627012729645 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC732.01 /GEN=vma11 /DEF=ATP synthase (subunit) --- --- --- --- --- --- SPAC732.01 // |vma11||ATP synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 11.0598265148606 3.46553165445997 1.72293155902788 2.84764436577461 2.89328742090458 Max fold change at or above threshold 3 11.0598265148606 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775977_at SPBC215.08c.S1 --- 11.0585566491924 --- --- --- --- 4.3703875541687 15.9548835754395 1.74156439304352 0.439383894205093 0.303710997104645 0.111571997404099 0.633789002895355 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC215.08c /GEN=arg4 /DEF=carbamoyl-phosphate synthase --- --- --- --- --- --- SPBC215.08c // |arg4||carbamoyl-phosphate synthase Arg4|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -11.0585566491924 3.65067934540974 -1.63927326852099 -2.50946078802812 -9.94662665566142 Max fold change at or above threshold 2 11.0585566491924 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779554_at SPCC1840.12.S1 --- 11.0567302422087 --- --- --- --- 1.46351945400238 16.1817398071289 2.66410684585571 1.08013331890106 0.5 0.274170011281967 0.533936023712158 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1840.12 /DEF=oligopeptide transporter (OPT) family --- --- --- --- --- --- SPCC1840.12 // ||SPCC965.02|oligopeptide transporter |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.68444820111148 11.0567302422087 1.17913134522413 1.82034262583255 -1.35494334670777 Max fold change at or above threshold 2 11.0567302422087 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775239_at SPBC1347.12.S1 --- 11.0560528859793 --- --- --- --- 3.75024795532227 0.748878002166748 6.03833675384521 5.60714197158813 0.366210997104645 0.633789002895355 0.24609400331974 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1347.12 /DEF=actin-like protein --- --- --- --- --- --- SPBC1347.12 // |||actin-like protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -11.0560528859793 -5.00782229478176 -1.20241147648278 1.61011667115924 1.49513899837759 Max fold change at or above threshold 3 11.0560528859793 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770939_at SPAC767.01c.S1 --- 11.0540293028689 --- --- --- --- 0.611475646495819 0.678216874599457 6.75926971435547 0.607412159442902 0.969726979732513 0.985840022563934 0.303710997104645 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC767.01c /GEN=vps1 /DEF=dynamin family --- --- --- --- --- --- SPAC767.01c // |vps1|SPAC9G1.14c|dynamin family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.72799351643902 1.10914781068733 1.04335306684691 11.0540293028689 -1.00668983488352 Max fold change at or above threshold 1 11.0540293028689 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775574_at SPAC652.01.S1 --- 11.042393429173 --- --- --- --- 0.698300719261169 6.14344787597656 7.7109112739563 0.456240564584732 0.633789002895355 0.171387001872063 0.0561522990465164 0.665526986122131 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC652.01 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC652.01 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.43821262808891 8.79771093817085 1.99409912063821 11.042393429173 -1.53055377681456 Max fold change at or above threshold 2 11.042393429173 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1769859_at SPAC22F3.09c.S1 --- 11.042376741617 --- --- --- --- 4.43807363510132 0.401912897825241 6.23978328704834 0.458728402853012 0.567627012729645 0.974853515625 0.753906011581421 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F3.09c /GEN=mcs1 /DEF=transcription factor --- --- --- --- --- --- S73870 // pct1+=res1+/sct1+ homolog [Schizosaccharomyces pombe, mRNA, 2030 nt]. // gb // 11 // --- /// Z32838 // S.pombe mRNA for DNA binding protein (CDC10 partner). // gb // 11 // --- /// SPAC22F3.09c // |res2|mcs1, pct1|MBF transcription factor complex subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.64137627231914 -11.042376741617 -9.03191497749558 1.40596659724099 -9.67473042327267 Max fold change at or above threshold 2 11.042376741617 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775016_at SPAC4D7.08c.S1 --- 11.0407637106005 --- --- --- --- 0.781672418117523 8.6302604675293 0.489401578903198 0.653210699558258 0.567627012729645 0.0676269978284836 0.725830018520355 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4D7.08c /GEN=ade4 /DEF=amidophosphoribosyltransferase (PMID 8082193) --- --- --- --- --- --- SPAC4D7.08c // |ade4|min13, aza1|amidophosphoribosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.12167744328143 11.0407637106005 -3.10285989689853 -1.59720044195471 -1.19666199381936 Max fold change at or above threshold 1 11.0407637106005 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774016_at SPBC36.10.S1 --- 11.0337063188871 --- --- --- --- 2.54234576225281 0.289773315191269 0.428864926099777 2.75737357139587 0.665526986122131 0.805419981479645 0.904784977436066 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC36.10 /DEF=phenylalanyl-tRNA synthetase (alpha subunit) (predicted) --- --- --- --- --- --- SPBC36.10 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -11.0337063188871 -8.77356757496699 -7.42813306644162 -5.92808039905161 1.08457850711562 Max fold change at or above threshold 2 11.0337063188871 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776577_at SPAC1F7.08.S1 --- 11.0206140056406 --- --- --- --- 0.643636882305145 7.09327363967896 0.786880254745483 1.0149313211441 0.850341975688934 0.5 0.932372987270355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F7.08 /GEN=fio1 /DEF=iron transport multicopper oxidase --- --- --- --- --- --- SPAC1F7.08 // |fio1||iron transport multicopper oxidase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.89285169563923 11.0206140056406 4.47515366810098 1.22255308292359 1.57686942598627 Max fold change at or above threshold 1 11.0206140056406 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772129_at SPBC2D10.14c.S1 --- 11.0169499416717 --- --- --- --- 10.3523120880127 8.47333335876465 6.9628701210022 3.7192051410675 0.0676269978284836 0.398925989866257 0.5 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2D10.14c /GEN=myo51 /DEF=myosin (type V) --- --- --- --- --- --- SPBC2D10.14c // |myo51||myosin type V|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -11.0169499416717 -1.22175201301439 -5.33087068188611 -1.48678804977087 -2.78347434340267 Max fold change at or above threshold 4 11.0169499416717 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769715_at SPAC29B12.14c.S1 --- 11.0130797340285 --- --- --- --- 0.268823325634003 2.76736807823181 0.762496173381805 2.96057271957397 0.943848013877869 0.432372987270355 0.633789002895355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29B12.14c /DEF=purine transporter (predicted) --- --- --- --- --- --- SPAC29B12.14c // |||purine transporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 7.83353033531133 10.2943748341226 2.84399682756972 2.83642117581689 11.0130797340285 Max fold change at or above threshold 2 11.0130797340285 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769559_at SPAC8C9.09c.S1 --- 10.9878706669223 --- --- --- --- 15.6327466964722 2.77932667732239 7.70198106765747 1.93245720863342 0.149657994508743 0.432372987270355 0.171387001872063 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8C9.09c /DEF=sequence orphan --- --- --- --- --- --- SPAC8C9.09c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -10.7695232072795 -5.624652482929 -10.9878706669223 -2.02970463821548 -8.08956939725832 Max fold change at or above threshold 3 10.9878706669223 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776823_at SPAC11D3.04c.S1 --- 10.9817803337983 --- --- --- --- 2.28193950653076 0.532409131526947 1.93667185306549 2.03531289100647 0.366210997104645 0.969726979732513 0.466064006090164 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11D3.04c /DEF=sequence orphan --- --- --- --- --- --- SPAC11D3.04c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -10.9817803337983 -4.28606380207298 -5.13290552631512 -1.1782788617074 -1.12117380900699 Max fold change at or above threshold 0 10.9817803337983 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777074_at SPAC13F5.06c.S1 --- 10.9721528847198 --- --- --- --- 0.286495804786682 3.14347577095032 0.417552381753922 0.541453540325165 0.334473013877869 0.5 0.828612983226776 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13F5.06c /GEN=sec10 /DEF=localization exocyst --- --- --- --- --- --- SPAC13F5.06c // |sec10||exocyst complex subunit Sec10p|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 9 // --- --- No No 5.32464098338077 10.9721528847198 3.31856475738994 1.45744675760548 1.88991786713358 Max fold change at or above threshold 1 10.9721528847198 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777930_at SPAPB2B4.02.S1 --- 10.9638721897113 --- --- --- --- 0.727634847164154 2.66225433349609 7.97769546508789 3.32688856124878 0.753906011581421 0.567627012729645 0.366210997104645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB2B4.02 /GEN=grx4 /DEF=PICOT domain --- --- --- --- --- --- SPAPB2B4.02 // |grx4||monothiol glutaredoxin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.94427167079235 3.65877794868102 10.6730200405695 10.9638721897113 4.57219520782274 Max fold change at or above threshold 3 10.9638721897113 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1775497_at YIL014C-A.S1 Hypothetical protein 10.9556870496208 4.36875903606415 2.22560942173004 --- --- --- --- 3.80202960968018 1.93933129310608 6.79818677902222 0.649189233779907 0.633789002895355 0.780517995357513 0.219482004642487 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL014C-A /GEN=BAR1 /DB_XREF=GI:6322175 /SEG=NC_001141:-325210,325524 /DEF=Hypothetical ORF /NOTE=Yil014c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003536 // YIL014C-A SGDID:S0003536, Chr IX from 325524-325210, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YIL014C-A // cdna:known chromosome:SGD1:IX:325210:325524:-1 gene:YIL014C-A // ensembl // 11 // --- --- No cerevisiae_gene -10.9556870496208 -1.96048484505747 -2.08572823378347 1.78804151385714 -5.85658142779547 Max fold change at or above threshold 2 10.9556870496208 Max fold change at or above threshold 0.189165466206149 -0.508787231527946 1.31182497610668 -0.992203210784886 3.29718422889709 2.66880309026866 0.809418857120206 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769896_at SPCC777.10c.S1 --- 10.9515530185217 --- --- --- --- 0.59369432926178 6.50187492370605 0.821280837059021 0.36705020070076 0.888427972793579 0.533936023712158 0.828612983226776 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC777.10c /GEN=ubc12 /DEF=ubiquitin conjugating enzyme --- --- --- --- --- --- SPCC777.10c // |ubc12||ubiquitin conjugating enzyme|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 7.54465351168782 10.9515530185217 -1.30776433285137 1.38333953447093 -1.61747447114405 Max fold change at or above threshold 1 10.9515530185217 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775360_at SPBC30D10.11.S1 --- 10.9322839030873 --- --- --- --- 6.17776536941528 3.5650897026062 1.90353441238403 0.565093755722046 0.129638999700546 0.432372987270355 0.24609400331974 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30D10.11 /GEN=gpi1 /DEF=N-acetylglucosaminyl transferase component (predicted) --- --- --- --- --- --- U77355 // Schizosaccharomyces pombe Gpi1+ (gpi1+) mRNA, complete cds. // gb // 11 // --- /// SPBC30D10.11 // |gpi1||pig-q|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.20064016408247 -1.73284990975097 -8.46229684338754 -3.24541827519582 -10.9322839030873 Max fold change at or above threshold 2 10.9322839030873 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779887_at SPAC15F9.02.S1 --- 10.9290942220966 --- --- --- --- 4.67792367935181 0.42802482843399 4.0506329536438 0.605829238891602 0.5 0.932372987270355 0.5 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15F9.02 /GEN=seh1 /DEF=nucleoporin (PMID 15116432) --- --- --- --- --- --- SPAC15F9.02 // |seh1||nucleoporin |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.18455679591766 -10.9290942220966 -5.17458763535052 -1.15486239629382 -7.72152180688791 Max fold change at or above threshold 2 10.9290942220966 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777826_at SPBC18E5.05c.S1 --- 10.9274977685592 --- --- --- --- 5.41414785385132 0.495460897684097 1.42002069950104 1.66628181934357 0.129638999700546 0.904784977436066 0.780517995357513 0.688720703125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18E5.05c /DEF=hypothetical protein --- --- --- --- --- --- SPBC18E5.05c // |||DNA-directed RNA polymerase II, holoenzyme |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.36963153756336 -10.9274977685592 -4.46749258469929 -3.81272460024965 -3.24923898886698 Max fold change at or above threshold 1 10.9274977685592 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770722_at SPAC959.04c.S1 --- 10.9229061660756 --- --- --- --- 0.332359969615936 1.03829860687256 0.412236958742142 2.71444296836853 0.850341975688934 0.601073980331421 0.725830018520355 0.076904296875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC959.04c /DEF=mannosyltransferase (predicted) --- --- --- --- --- --- SPAC959.04c // |||mannosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.9955701815345 3.1240182386356 10.9229061660756 1.24033276094744 8.16717780876333 Max fold change at or above threshold 1 10.9229061660756 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774017_at SPAC26F1.03.S1 --- 10.912531140156 --- --- --- --- 0.376271575689316 4.10607528686523 2.03873324394226 2.05530118942261 0.805419981479645 0.696289002895355 0.780517995357513 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26F1.03 /GEN=pda1 /DEF=pyruvate dehydrogenase e1 component (alpha subunit) (predicted) --- --- --- --- --- --- SPAC26F1.03 // |pda1||pyruvate dehydrogenase e1 component |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.6750937125339 10.912531140156 -1.22160458361788 5.41824941256159 5.46228129418857 Max fold change at or above threshold 1 10.912531140156 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774073_at SPCC1259.03.S1 --- 10.9056940387985 --- --- --- --- 0.615137934684753 0.635001659393311 1.17313206195831 0.801226496696472 0.780517995357513 0.850341975688934 0.533936023712158 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1259.03 /GEN=rpa12 /DEF=DNA-directed RNA polymerase activity (PMID 11254133) --- --- --- --- --- --- AB023817 // Schizosaccharomyces pombe rpa12+ mRNA for SpRPA12, complete cds. // gb // 11 // --- /// AF219943 // Schizosaccharomyces pombe RNA polymerase I specific subunit Rpa12 (rpa12) mRNA, rpa12+ allele, complete cds. // gb // 11 // --- /// SPCC1259.03 // |rpa12||DNA-directed RNA polymerase subunit |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.45803692787205 1.03229149689612 10.9056940387985 1.90710407505517 1.3025151783349 Max fold change at or above threshold 0 10.9056940387985 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777985_at SPCC4B3.02c.S1 --- 10.8987531962726 --- --- --- --- 1.22723627090454 3.09166073799133 13.3753452301025 5.24541711807251 0.366210997104645 0.398925989866257 0.00805663969367743 0.0461426004767418 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4B3.02c /DEF=involved in intracellular protein transport --- --- --- --- --- --- SPCC4B3.02c // |||Golgi transport protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 5.61053090471659 2.51920580518094 4.30935217416475 10.8987531962726 4.27417054273204 Max fold change at or above threshold 3 10.8987531962726 Max fold change at or above threshold APAAPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1779701_at SPAC20H4.07.S1 --- 10.8971088716762 --- --- --- --- 8.61673259735107 1.07589995861053 9.22213077545166 0.79073566198349 0.274170011281967 0.780517995357513 0.219482004642487 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20H4.07 /GEN=rhp57 /DEF=RecA family --- --- --- --- --- --- SPAC20H4.07 // |rhp57||RecA family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.85909608246392 -8.00886042274703 -9.93744032904102 1.07025843859733 -10.8971088716762 Max fold change at or above threshold 2 10.8971088716762 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779477_at SPBC19C2.09.S1 --- 10.8915816448978 --- --- --- --- 3.75316429138184 3.35165500640869 0.436839193105698 0.34459313750267 0.24609400331974 0.633789002895355 0.753906011581421 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C2.09 /GEN=sre1 /DEF=membrane-tethered transcription factor (predicted) (PMID 11790253) --- --- --- --- --- --- SPBC19C2.09 // |sre1||membrane-tethered transcription factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.06219904501416 -1.11979433569548 -3.23964614766115 -8.59163818314654 -10.8915816448978 Max fold change at or above threshold 2 10.8915816448978 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Sp-28SrRNA-5_at AFFX-r2-Sp-28SrRNA-5 --- 10.890697389769 --- --- --- --- 1.19015145301819 12.9615793228149 5.73570728302002 4.32372713088989 0.601073980331421 0.0676269978284836 0.171387001872063 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=Z19578 gi|288694:4190-7673 S.pombe gene encoding 18S, 5.8S, and 28S ribosomal RNA (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPRRNA.22 // |||18S, 5.8S, and 28S rRNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPRRNA.23 // |||18S, 5.8S, and 28S rRNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPRRNA.08 // |||18S, 5.8S, and 28S ribosomal RNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- L11111 // gb // 3 // Cross Hyb Matching Probes /// L20911 // gb // 3 // Cross Hyb Matching Probes AFFX_control No 1.85498122241883 10.890697389769 -4.15624887793365 4.81930872619148 3.63292177640505 Max fold change at or above threshold 3 10.890697389769 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772360_at SPAC637.11.S1 --- 10.8878183718864 --- --- --- --- 3.10894513130188 1.68607604503632 4.85227537155151 4.50048923492432 0.466064006090164 0.753906011581421 0.149657994508743 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC637.11 /DEF=RNA helicase (predicted) --- --- --- --- --- --- SPAC637.11 // |suv3||RNA helicase ATP-dependent|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.11433612119731 -1.84389377955661 -10.8878183718864 1.56074654476762 1.44759365149675 Max fold change at or above threshold 3 10.8878183718864 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772880_at YMR095C.S1 Protein of unconfirmed function, involved in pyridoxine metabolism; expression is induced during stationary phase; forms a putative glutamine amidotransferase complex with Snz1p, with Sno1p serving as the glutaminase 10.8874917652089 60.3077507019043 649.639038085938 SNO1 8614 // pyridoxine metabolism // inferred from mutant phenotype /// 8614 // pyridoxine metabolism // inferred from sequence similarity /// 9228 // thiamin biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 624.831359863281 63.2256660461426 57.389835357666 674.446716308594 0.000244141003349796 0.00292969006113708 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR095C /GEN=SNO1 /DB_XREF=GI:6323742 /SEG=NC_001145:-457284,457958 /DEF=Protein of unconfirmed function, involved in pyridoxine metabolism; expression is induced during stationary phase; forms a putative glutamine amidotransferase complex with Snz1p, with Sno1p serving as the glutaminase /NOTE=Sno1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: pyridoxine metabolism [goid GO:0008614] [evidence ISS] [pmid 10438537]; go_process: pyridoxine metabolism [goid GO:0008614] [evidence IMP] [pmid 12271461]; go_process: thiamin biosynthesis [goid GO:0009228] [evidence IMP] [pmid 12271461] --- --- --- --- --- --- S0004701 // SNO1 SGDID:S0004701, Chr XIII from 457958-457284, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018791 // cdna:Genscan chromosome:SGD1:XIII:457284:457937:-1 // ensembl // 11 // --- /// GENEFINDER00000022067 // cdna:GeneFinder chromosome:SGD1:XIII:457284:457958:-1 // ensembl // 11 // --- /// YMR095C // cdna:known chromosome:SGD1:XIII:457284:457958:-1 gene:YMR095C // ensembl // 11 // --- --- No cerevisiae_gene -4.0578957184186 -9.88255876035018 -1.47281050034762 -10.8874917652089 1.07940599597333 Max fold change at or above threshold 4 10.8874917652089 Max fold change at or above threshold 0.791694396892331 -0.855913374420022 -0.873034212225359 0.93725318975305 354.973394393921 340.861279969448 0.960244585517268 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778019_at SPAC22A12.11.S1 --- 10.8860285088545 --- --- --- --- 0.553837418556213 6.02908992767334 5.48492240905762 3.1578357219696 0.74609375 0.303710997104645 0.194580003619194 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22A12.11 /GEN=dak1 /DEF=dihydroxyacetone kinase (PMID 10091325) --- --- --- --- --- --- SPAC22A12.11 // |dak1||dihydroxyacetone kinase Dak1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.07293961912859 10.8860285088545 8.01620861292423 9.90348832579088 5.70173775943434 Max fold change at or above threshold 3 10.8860285088545 Max fold change at or above threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1769412_at SPAC15E1.07c.S1 --- 10.8853057169786 --- --- --- --- 3.99025988578796 0.689784467220306 1.00052928924561 0.366573065519333 0.725830018520355 0.59228515625 0.432372987270355 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15E1.07c /DEF=sequence orphan --- --- --- --- --- --- SPAC15E1.07c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.16315026149947 -5.78479231616785 -1.39653965073581 -3.98814900141164 -10.8853057169786 Max fold change at or above threshold 1 10.8853057169786 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774280_at SPCC737.03c.S1 --- 10.8832119105332 --- --- --- --- 0.529517769813538 1.49965584278107 3.55021739006042 5.76285409927368 0.962401986122131 0.888427972793579 0.665526986122131 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC737.03c /DEF=hypothetical protein --- --- --- --- --- --- SPCC737.03c // |||hypothetical protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 9.86415099606769 2.8321161786679 1.23275423651545 6.70462370188367 10.8832119105332 Max fold change at or above threshold 2 10.8832119105332 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777615_at SPAC13A11.03.S1 --- 10.882137757173 --- --- --- --- 5.23173522949219 7.15021324157715 3.83639526367188 0.480763554573059 0.171387001872063 0.432372987270355 0.018554700538516 0.870360970497131 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13A11.03 /DEF=involved in homologous chromosome pairing at meiosis (predicted) (PMID 11940665) --- --- --- --- --- --- SPAC13A11.03 // |mcp7||meiosis-specific coiled-coil protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.53936273357467 1.36670013445447 -6.75361658466436 -1.36371121063391 -10.882137757173 Max fold change at or above threshold 3 10.882137757173 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1770069_at SPCC1183.11.S1 --- 10.8805007422765 --- --- --- --- 1.25645077228546 13.6708135604858 13.0921573638916 10.3187866210938 0.633789002895355 0.24609400331974 0.0805663987994194 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1183.11 /DEF=MS ion channel --- --- --- --- --- --- SPCC1183.11 // ||SPCC31H12.01|MS ion channel|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.44442584839495 10.8805007422765 4.32823886967139 10.4199524984789 8.21264696453174 Max fold change at or above threshold 3 10.8805007422765 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1777592_at SPBC1289.10c.S1 --- 10.8646908399485 --- --- --- --- 0.885628938674927 9.62208461761475 3.4707977771759 4.37305402755737 0.753906011581421 0.366210997104645 0.601073980331421 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1289.10c /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPBC1289.10c // |||transcriptional factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.2188993853169 10.8646908399485 4.19858224189596 3.91902028672289 4.93779486711479 Max fold change at or above threshold 3 10.8646908399485 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769513_at SPBC839.16.S1 --- 10.8614973489808 --- --- --- --- 0.405116409063339 1.98716199398041 0.608938574790955 0.579667985439301 0.919434010982513 0.932372987270355 0.999267995357513 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC839.16 /DEF=C-1-tetrahydrofolate synthase (predicted) --- --- --- --- --- --- SPBC839.16 // |||C-1-tetrahydrofolate synthase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 10.8614973489808 4.90516293471025 4.00544144382468 1.50311999506233 1.43086770239581 Max fold change at or above threshold 0 10.8614973489808 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-LysX-3_at AFFX-LysX-3 --- 10.8474118868457 --- --- --- --- 5.06190347671509 2.61080718040466 2.22915029525757 0.769229769706726 0.239062741398811 0.354452669620514 0.287743121385574 0.45541250705719 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 1061-1343 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). --- --- --- --- --- --- X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X17013 // Bacillus subtilis /REF=X17013 /DEF=B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 1008-1263 of X17013 /LEN=1108 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-LysX-3 // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 1061-1343 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // --- // --- /// X17013 // Bacillus subtilis /REF=X17013 /DEF=B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 /LEN=1108 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-LysX-3 // --- // unknown // --- // --- /// AFFX-LysX-3 // --- // unknown // --- // --- /// AFFX-LysX-3 // --- // unknown // --- // --- /// AFFX-LysX-3 // --- // unknown // --- // --- /// AFFX-LysX-3 // --- // gb // --- // --- /// AFFX-LysX-3 // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 1061-1343 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // --- // --- /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-LysX-3 // --- // unknown // --- // --- /// AFFX-LysX-3 // --- // affx // --- // --- /// AFFX-LysX-3 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-LysX-3 // --- // affx // --- // --- /// AFFX-LysX-3 // --- // affx // --- // --- /// AFFX-LysX-3 // --- // affx // --- // --- /// AFFX-LysX-3 // --- // affx // --- // --- /// AFFX-LysX-3 // --- // affx // --- // --- /// AFFX-LysX-3 // --- // affx // --- // --- /// AFFX-LysX-3 // --- // affx // --- // --- /// AFFX-LysX-3 // --- // affx // --- // --- /// AFFX-LysX-3 // --- // affx // --- // --- /// AFFX-LysX-3 // --- // affx // --- // --- /// AFFX-LysX-3 // --- // affx // --- // --- 939970 // gb // 6 // Negative Strand Matching Probes /// 50812173 // gb // 19 // Negative Strand Matching Probes AFFX_control No -10.8474118868457 -1.93882700902122 -2.38829316690815 -2.27077711515643 -6.58048307028597 Max fold change at or above threshold 2 10.8474118868457 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779062_at SPBC17A3.04c.S1 --- 10.8431614188073 --- --- --- --- 0.730185925960541 7.9175238609314 4.95853567123413 6.21057891845703 0.805419981479645 0.194580003619194 0.466064006090164 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17A3.04c /DEF=methionine-tRNA ligase (predicted) --- --- --- --- --- --- SPBC17A3.04c // |||methionine-tRNA ligase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 8.11007823607339 10.8431614188073 1.55961734419211 6.79078505205548 8.50547606801264 Max fold change at or above threshold 3 10.8431614188073 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776493_at SPAC30C2.06c.S1 --- 10.8391094057114 --- --- --- --- 5.77846240997314 7.97614526748657 5.98602390289307 0.533112287521362 0.194580003619194 0.194580003619194 0.303710997104645 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30C2.06c /GEN=dml1 /DEF=involved in mitochondrial genome maintenance --- --- --- --- --- --- SPAC30C2.06c // |dml1||mitochondrial genome maintenance protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.42010815417208 1.38032312085658 -1.12165473385178 1.03591984825612 -10.8391094057114 Max fold change at or above threshold 3 10.8391094057114 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1779495_at SPCC285.16c.S1 --- 10.8386909864427 --- --- --- --- 0.483074933290482 5.23589992523193 1.02714776992798 0.378896713256836 0.633789002895355 0.601073980331421 0.753906011581421 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC285.16c /GEN=msh6 /DEF=MutS family --- --- --- --- --- --- SPCC285.16c // |msh6||MutS family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.78579353006035 10.8386909864427 5.51386502999357 2.12627006524956 -1.27495150099924 Max fold change at or above threshold 1 10.8386909864427 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773130_at SPAC23H4.15.S1 --- 10.8277655768877 --- --- --- --- 6.73285055160522 9.25317096710205 7.52877187728882 5.55022096633911 0.125 0.16552734375 0.111571997404099 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H4.15 /DEF=involved in RNA processing (predicted) --- --- --- --- --- --- SPAC23H4.15 // |||ribosome biogenesis protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -10.0266129539786 1.37433185189235 -10.8277655768877 1.11821461349589 -1.21307792832727 Max fold change at or above threshold 4 10.8277655768877 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773999_at SPBC12D12.06.S1 --- 10.8246455056382 --- --- --- --- 0.613513052463531 6.64106130599976 0.796363234519959 2.3529269695282 0.753906011581421 0.171387001872063 0.774169921875 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12D12.06 /GEN=srb11 /DEF=cyclin --- --- --- --- --- --- SPBC12D12.06 // |srb11||cyclin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.83721623182109 10.8246455056382 8.03067315091818 1.29803796565077 3.83517018925699 Max fold change at or above threshold 1 10.8246455056382 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1779916_at SPAC1556.02c.S1 --- 10.8214542305933 --- --- --- --- 5.04501962661743 2.40250754356384 0.569551289081573 3.16371202468872 0.334473013877869 0.753906011581421 0.962401986122131 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1556.02c /GEN=sdh1 /DEF=succinate dehydrogenase (ubiquinone) --- --- --- --- --- --- D89263 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1750. // gb // 11 // --- /// SPAC1556.02c // |sdh1||succinate dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.40089325571519 -2.09989751754691 -10.8214542305933 -8.85788465996231 -1.5946519744046 Max fold change at or above threshold 2 10.8214542305933 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776534_at SPAC2F7.02c.S1 --- 10.8146689038692 --- --- --- --- 3.22858929634094 5.77969884872437 1.8044136762619 0.4090656042099 0.24609400331974 0.334473013877869 0.696289002895355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F7.02c /DEF=phosphoprotein phosphatase activity --- --- --- --- --- --- SPAC2F7.02c // |||phosphoprotein phosphatase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -9.05570193729623 1.7901623025495 -10.8146689038692 -1.78927334613725 -7.89259537617904 Max fold change at or above threshold 2 10.8146689038692 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772351_at SPAC31G5.06.S1 --- 10.8139580709123 --- --- --- --- 7.16037559509277 1.60960257053375 0.845524251461029 0.662141978740692 0.432372987270355 0.633789002895355 0.919434010982513 0.823486328125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31G5.06 /DEF=sequence orphan --- --- --- --- --- --- SPAC31G5.06 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.43544752595921 -4.44853638169723 -9.23193321779888 -8.46856324075857 -10.8139580709123 Max fold change at or above threshold 1 10.8139580709123 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776149_at SPAC1834.03c.S1 --- 10.8085362212618 --- --- --- --- 10.1329460144043 0.93749475479126 2.56830906867981 2.9383602142334 0.0537109375 0.533936023712158 0.24609400331974 0.366210997104645 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1834.03c /GEN=hhf1 /DEF=histone H4 --- --- --- --- --- --- SPAC1834.03c // |hhf1|h4.1|histone H4|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.50616187892956 -10.8085362212618 -4.39005660296672 -3.94537641048511 -3.44850368083544 Max fold change at or above threshold 3 10.8085362212618 Max fold change at or above threshold MPAAAA No 4 0 MAAA 3 0 1 No No x = 1
1779313_s_at YEL075C.S1 Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// similar to other subtelomerically-encoded proteins /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein 10.8082880229194 1.65952628850937 0.994968727231026 YRF1-5 /// YRF1-7 /// YRF1-6 /// YRF1-3 /// YRF1-2 /// YRF1-1 722 // telomerase-independent telomere maintenance // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay /// 5634 // nucleus // inferred from curator 4386 // helicase activity // inferred from sequence similarity /// 3678 // DNA helicase activity // inferred from direct assay 0.484713584184647 1.05281269550323 2.2662398815155 1.5052238702774 0.932372987270355 0.633789002895355 0.696289002895355 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL075C /DB_XREF=GI:6320760 /SEG=NC_001137:-5345,5713 /DEF=Hypothetical ORF /NOTE=Yel075cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 0.239999994635582 /// scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 2.40000009536743 /// scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 5.0 --- S0000801 // YEL075C SGDID:S0000801, Chr V from 5713-5345, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0000991 // YER189W SGDID:S0000991, Chr V from 571150-571518, Uncharacterized ORF // sgd // 11 // --- /// YEL075C // cdna:known chromosome:SGD1:V:5345:5713:-1 gene:YEL075C // ensembl // 11 // --- /// YER189W // cdna:known chromosome:SGD1:V:571150:571518:1 gene:YER189W // ensembl // 11 // --- YEL075W-A // ensembl // 11 // Negative Strand Matching Probes No cerevisiae_gene 6.90482860947687 2.1720305142143 10.8082880229194 4.67542061014779 3.10538825275424 Max fold change at or above threshold 0 10.8082880229194 Max fold change at or above threshold -1.1197151625246 -0.364719819455682 1.24790702036826 0.236527961612023 1.3272475078702 0.75245379529014 0.566928015180518 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775094_at SPAC5D6.05.S1 --- 10.8074287911016 --- --- --- --- 3.90179133415222 1.61175191402435 3.80071425437927 0.885645270347595 0.432372987270355 0.828612983226776 0.398925989866257 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5D6.05 /GEN=sep11 /DEF=RNA polymerase II holoenzyme component (PMID 10625684) --- --- --- --- --- --- AJ313525 // Schizosaccharomyces pombe partial mRNA for sep11p (sep11 gene). // gb // 9 // --- /// SPAC5D6.05 // |sep11|pmc6|RNA polymerase II holoenzyme component |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -10.8074287911016 -2.42083865401463 1.34380215112477 -1.02659423282255 -4.40559156672384 Max fold change at or above threshold 2 10.8074287911016 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772757_at SPBC342.02.S1 --- 10.8045119077135 --- --- --- --- 4.76888799667358 4.65325403213501 1.06678426265717 0.670128345489502 0.432372987270355 0.567627012729645 0.725830018520355 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC342.02 /DEF=glutaminyl-tRNA synthetase (predicted) --- --- --- --- --- --- SPBC342.02 // |||glutaminyl-tRNA synthetase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.67657192212155 -1.02485012933745 -10.8045119077135 -4.4703396587377 -7.11638006177772 Max fold change at or above threshold 2 10.8045119077135 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-ECOLOXL_x_at AFFX-Sc-ECOLOXL --- 10.8037834188136 --- --- --- --- 0.115224465727806 0.0451595634222031 0.362787485122681 1.24486017227173 0.916259765625 0.850341975688934 0.828612983226776 0.107177734375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL M10289 /DEF=E.coli/bacteriophage P1 loxL recombination site. --- --- --- --- --- --- AFFX-Sc-ECOLOXL // --- // affx // --- // --- --- No No 1.81630342668161 -1.15224465727806 2.32489971332994 3.14852824728813 10.8037834188136 Max fold change at or above threshold 0 10.8037834188136 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779899_at SPCC584.15c.S1 --- 10.7967147082816 --- --- --- --- 1.04182207584381 11.2482557296753 3.12288546562195 0.204717144370079 0.5 0.219482004642487 0.303710997104645 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC584.15c /DEF=arrestin family --- --- --- --- --- --- SPCC584.15c // |||arrestin family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.95516358776887 10.7967147082816 3.01567961414448 2.99752283814163 -5.08908073649391 Max fold change at or above threshold 2 10.7967147082816 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773985_at SPAC3H1.02c.S1 --- 10.7951866465086 --- --- --- --- 1.31899738311768 10.4567756652832 14.2388229370117 11.8726654052734 0.624755859375 0.334473013877869 0.0461426004767418 0.24609400331974 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H1.02c /DEF=metallo peptidase --- --- --- --- --- --- SPAC3H1.02c // |||metallopeptidase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.02162934387221 7.92782138852075 5.16018181305488 10.7951866465086 9.00128048564461 Max fold change at or above threshold 3 10.7951866465086 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1772493_at SPBC1604.10.S1 --- 10.7881445210836 --- --- --- --- 1.74277555942535 1.30721342563629 6.59001541137695 0.161545440554619 0.633789002895355 0.850341975688934 0.432372987270355 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1604.10 /GEN=srb7 /DEF=RNA polymerase II holoenzyme component (PMID 10625684) --- --- --- --- --- --- SPBC1604.10 // |srb7|med21|mediator complex subunit Srb7 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.01466310310177 -1.33319894460008 -2.7368460168764 3.78133338841972 -10.7881445210836 Max fold change at or above threshold 1 10.7881445210836 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770560_at SPAC29A4.06c.S1 --- 10.7813518534498 --- --- --- --- 0.226056382060051 0.797247469425201 1.05494618415833 0.146007791161537 0.969726979732513 0.753906011581421 0.753906011581421 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29A4.06c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC29A4.06c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 10.7813518534498 3.52676381953868 1.05408833670492 4.66673922029807 -1.54824876303999 Max fold change at or above threshold 0 10.7813518534498 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-J01636-3_at AFFX-Sc-J01636-3 --- 10.7751948075069 --- --- --- --- 4.40113353729248 2.33826947212219 4.35156440734863 0.408450484275818 0.567627012729645 0.780517995357513 0.5 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL J01636 /FEA=CDS_3 /DB_XREF=AAA24054.1 GI:146578 /NOTE=lactose permease /GEN=lacY --- --- --- --- --- --- AFFX-Sc-J01636-3 // --- // affx // --- // --- --- No No 1.24175462949219 -1.88221827713384 1.71020285712243 -1.01139110565849 -10.7751948075069 Max fold change at or above threshold 2 10.7751948075069 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776001_at SPAC18G6.11c.S1 --- 10.7724272673442 --- --- --- --- 2.13616466522217 0.842482030391693 0.943902432918549 0.243962854146957 0.303710997104645 0.888427972793579 0.696289002895355 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18G6.11c /GEN=rrn3 /DEF=RNA polymerase I specific transcription initiation factor (predicted) --- --- --- --- --- --- SPAC18G6.11c // |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.21792189134397 -2.53556110179467 -10.7724272673442 -2.26312020260096 -8.75610622236528 Max fold change at or above threshold 0 10.7724272673442 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775321_at SPAC22E12.11c.S1 --- 10.7720992491081 --- --- --- --- 6.41415643692017 1.1045229434967 5.81664896011353 0.604095220565796 0.171387001872063 0.725830018520355 0.194580003619194 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22E12.11c /DEF=transcription factor --- --- --- --- --- --- SPAC22E12.11c // |set3||histone lysine methyltransferase Set3|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -10.7720992491081 -5.80717356274574 -2.05325895797206 -1.1027236611499 -10.6177904054806 Max fold change at or above threshold 2 10.7720992491081 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770396_at SPBC56F2.12.S1 --- 10.7678469485155 --- --- --- --- 5.62123537063599 8.40180110931396 7.51218128204346 3.63216829299927 0.0239257998764515 0.0561522990465164 0.0805663987994194 0.0461426004767418 P M A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC56F2.12 /GEN=ilv5 /DEF=acetohydroxyacid reductoisomerase --- --- --- --- --- --- SPBC56F2.12 // |ilv5||acetohydroxyacid reductoisomerase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- D89175 // gb // 7 // Cross Hyb Matching Probes /// AB009603 // gb // 8 // Cross Hyb Matching Probes No No -1.39048995943387 1.49465385370679 -10.7678469485155 1.33639329911096 -1.54762525224134 Max fold change at or above threshold 4 10.7678469485155 Max fold change at or above threshold PPMAAP No 4 0 PMAP 1 2 1 No No 1 < x = 2
1773064_at SPBC31F10.06c.S1 --- 10.7631983564723 --- --- --- --- 4.47518396377563 3.30854797363281 1.5099630355835 0.767624080181122 0.696289002895355 0.919434010982513 0.904784977436066 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31F10.06c /GEN=sar1 /DEF=GTP binding --- --- --- --- --- --- M95797 // Schizosaccharomyces pombe GTP-binding Sarl protein mRNA, complete cds. // gb // 11 // --- /// SPBC31F10.06c // |sar1||ADP-ribosylation factor|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -10.7631983564723 -1.35261268672548 -7.6935039336393 -2.96377054160553 -5.82991607391955 Max fold change at or above threshold 2 10.7631983564723 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771309_at SPAC212.07c.S1 --- 10.7540438651831 --- --- --- --- 0.416415482759476 4.47815036773682 3.37842488288879 0.268348574638367 0.904784977436066 0.366210997104645 0.129638999700546 0.62548828125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC212.07c /DEF=pseudo-similar to S. pombe specific protein family --- --- --- --- --- --- SPAC212.07c // |||pseudo-similar to S. pombe specific protein family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.07469076051425 10.7540438651831 7.60454561557507 8.1131106377238 -1.55177080154291 Max fold change at or above threshold 2 10.7540438651831 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771412_at SPAC1071.04c.S1 --- 10.7275107634661 --- --- --- --- 7.3420786857605 7.44081735610962 7.68842935562134 0.684415876865387 0.194580003619194 0.107177734375 0.194580003619194 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1071.04c /DEF=localization signal peptidase complex (predicted) --- --- --- --- --- --- SPAC1071.04c // |||signal peptidase subunit |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.21740097435058 1.01344832636303 -1.70318896310416 1.04717338027616 -10.7275107634661 Max fold change at or above threshold 3 10.7275107634661 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-X58791-1_at AFFX-Sc-X58791-1 --- 10.7223228027815 --- --- --- --- 0.100829444825649 1.08112585544586 0.478775531053543 0.310652047395706 0.967773020267487 0.769531011581421 0.759765625 0.653320014476776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL X58791 /FEA=CDS_1 /DB_XREF=CAA41597.1 GI:48447 SPTREMBL:Q56698 /PROD=luciferase alpha subunit /GEN=luxA --- --- --- --- --- --- AFFX-Sc-X58791-1 // --- // affx // --- // --- --- No No 2.40189907721801 10.7223228027815 -1.00829444825649 4.74837019961208 3.08096556450226 Max fold change at or above threshold 0 10.7223228027815 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770521_at SPAC27F1.03c.S1 --- 10.7147100927099 --- --- --- --- 0.449224531650543 2.12313437461853 4.81331062316895 3.25542712211609 0.976073980331421 0.625244140625 0.533936023712158 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27F1.03c /GEN=uch1 /DEF=ubiquitin C-terminal hydrolase activity --- --- --- --- --- --- SPAC27F1.03c // |uch1||ubiquitin C-terminal hydrolase activity|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 10.354281435056 4.72622090965891 1.76956725437016 10.7147100927099 7.24677058520153 Max fold change at or above threshold 2 10.7147100927099 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771226_at SPCC1393.02c.S1 --- 10.7140565123496 --- --- --- --- 4.31924152374268 1.74735522270203 2.03377628326416 0.40313783288002 0.24609400331974 0.398925989866257 0.533936023712158 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1393.02c /DEF=hypothetical protein --- --- --- --- --- --- SPCC1393.02c // |||non-specific DNA binding protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.30749689709778 -2.47187375962605 -3.20940730119216 -2.12375449516522 -10.7140565123496 Max fold change at or above threshold 1 10.7140565123496 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776050_at SPAC144.07c.S1 --- 10.7120713213147 --- --- --- --- 1.94288003444672 3.50159692764282 0.801009356975555 3.84538722038269 0.633789002895355 0.5 0.525634765625 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC144.07c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC144.07c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.07066749482254 1.80227130114083 -10.7120713213147 -2.42553974872731 1.97922010222199 Max fold change at or above threshold 2 10.7120713213147 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769512_at SPBC660.12c.S1 --- 10.7106841356728 --- --- --- --- 3.00369024276733 1.35213315486908 0.677841424942017 0.28043869137764 0.696289002895355 0.665526986122131 0.725830018520355 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC660.12c /DEF=peptide epimerase (predicted) --- --- --- --- --- --- SPBC660.12c // |||peptide epimerase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.90682560789528 -2.2214455965013 2.03625558503904 -4.43125800849996 -10.7106841356728 Max fold change at or above threshold 1 10.7106841356728 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772424_at SPBC28F2.10c.S1 --- 10.7075592251764 --- --- --- --- 1.11931014060974 0.508998870849609 3.73488879203796 0.104534573853016 0.567627012729645 0.79931640625 0.366210997104645 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC28F2.10c /GEN=kap1 /DEF=kinesin-associated protein (EMBL AF351206) --- --- --- --- --- --- AF351206 // Schizosaccharomyces pombe kinesin-associated protein 1 (kap1) mRNA, complete cds. // gb // 11 // --- /// SPBC28F2.10c // |kap1||kinesin-associated protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.45856388346855 -2.19904248263147 2.1311371246933 3.33677741006027 -10.7075592251764 Max fold change at or above threshold 1 10.7075592251764 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778815_at SPCC1919.13c.S1 --- 10.7051092495032 --- --- --- --- 0.621508777141571 0.952522873878479 6.65331935882568 2.73875069618225 0.870360970497131 0.432372987270355 0.274170011281967 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1919.13c /DEF=hypothetical protein --- --- --- --- --- --- SPCC1919.13c // |||hypothetical protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.06611313290919 1.5325976219665 4.63831750595822 10.7051092495032 4.4066162810737 Max fold change at or above threshold 2 10.7051092495032 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775126_at SPAC4F10.17.S1 --- 10.7019029181039 --- --- --- --- 0.751526951789856 1.26467561721802 7.58772277832031 0.616922438144684 0.601073980331421 0.274170011281967 0.0375977009534836 0.533936023712158 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F10.17 /DEF=hypothetical protein --- --- --- --- --- --- SPAC4F10.17 // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 6.62411748237106 1.68280806723702 10.7019029181039 10.0964080666025 -1.2181870934213 Max fold change at or above threshold 1 10.7019029181039 Max fold change at or above threshold APAPPA No 4 0 AAPA 3 1 0 No No x = 1
1771062_at SPCC4B3.16.S1 --- 10.6983189465594 --- --- --- --- 7.87115573883057 10.0404863357544 5.46958637237549 0.73573762178421 0.303710997104645 0.0537109375 0.24609400331974 0.533936023712158 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4B3.16 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC4B3.16 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.61481307133993 1.27560509141268 -2.72114974317898 -1.43907696175791 -10.6983189465594 Max fold change at or above threshold 3 10.6983189465594 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1779642_at SPBC691.03c.S1 --- 10.6964577371853 --- --- --- --- 2.90325903892517 1.38833928108215 7.41474485397339 0.376814603805542 0.533936023712158 0.828612983226776 0.303710997104645 0.747314453125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC691.03c /GEN=apl3 /DEF=adaptin --- --- --- --- --- --- SPBC691.03c // |apl3||adaptin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -10.2156064376734 -2.09117402243506 -10.6964577371853 2.55393843765262 -7.70474129612933 Max fold change at or above threshold 2 10.6964577371853 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770325_at SPBC947.09.S1 --- 10.6950436363378 --- --- --- --- 0.78802478313446 4.46115303039551 6.39474487304688 6.47231960296631 0.398925989866257 0.24609400331974 0.00415039015933871 0.0676269978284836 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC947.09 /DEF=conserved fungal protein --- --- --- --- --- --- SPBC947.09 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.36591048299271 5.6611836656339 10.6950436363378 8.11490324912249 8.21334524178529 Max fold change at or above threshold 3 10.6950436363378 Max fold change at or above threshold AAAPPA No 3 0 AAPA 3 1 0 No No x = 1
1778441_at SPAC17G8.05.S1 --- 10.6855497933363 --- --- --- --- 1.57266235351563 16.8047618865967 2.1838800907135 1.42144286632538 0.888427972793579 0.5 0.780517995357513 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G8.05 /DEF=sequence orphan --- --- --- --- --- --- SPAC17G8.05 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.49681302514893 10.6855497933363 1.35900372698077 1.38865159824772 -1.10638449899937 Max fold change at or above threshold 1 10.6855497933363 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780149_at SPBC32H8.08c.S1 --- 10.6817086861929 --- --- --- --- 0.548859715461731 0.860079884529114 5.86275959014893 4.09218072891235 0.774169921875 0.888427972793579 0.466064006090164 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32H8.08c /DEF=mannosyltransferase (predicted) --- --- --- --- --- --- SPBC32H8.08c // |||mannosyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.13942081622112 1.56703044566783 1.05809159046942 10.6817086861929 7.45578626675085 Max fold change at or above threshold 2 10.6817086861929 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779545_at SPCC417.07c.S1 --- 10.6596068586892 --- --- --- --- 0.921775162220001 1.26669096946716 1.53397691249847 1.06788539886475 0.943848013877869 0.985840022563934 0.904784977436066 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC417.07c /DEF=gamma tubulin complex (associated with) (PMID Venkatram et al in press) (Sawin et al in press) --- --- --- --- --- --- SPCC417.07c // |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.6452141426046 1.37418648427938 10.6596068586892 1.66415518162157 1.15850962646124 Max fold change at or above threshold 0 10.6596068586892 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776000_at SPBC1773.07c.S1 --- 10.6537332065036 --- --- --- --- 1.85235106945038 0.173868730664253 1.87114441394806 1.26512050628662 0.533936023712158 0.999267995357513 0.753906011581421 0.558349609375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1773.07c /GEN=sbp1 /DEF=GTP-binding (PMID 9504913) --- --- --- --- --- --- D76431 // Schizosaccharomyces pombe mRNA for ran binding protein 1, complete cds. // gb // 9 // --- /// SPBC1773.07c // |sbp1|yrb1|RanBP1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.65837900815946 -10.6537332065036 -3.72704501626227 1.0101456709841 -1.46416966624578 Max fold change at or above threshold 0 10.6537332065036 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775627_at SPAC27D7.06.S1 --- 10.6481698072253 --- --- --- --- 0.582699418067932 0.698114097118378 6.20468235015869 3.72584581375122 0.901123046875 0.601073980331421 0.533936023712158 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27D7.06 /DEF=electron transfer flavoprotein (alpha subunit) (predicted) --- --- --- --- --- --- D89139 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0551. // gb // 9 // --- /// SPAC27D7.06 // |||electron transfer flavoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.0346430281029 1.19806897942876 5.62181464665673 10.6481698072253 6.39411281052087 Max fold change at or above threshold 2 10.6481698072253 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777993_at SPAC17H9.01.S1 --- 10.6471237117028 --- --- --- --- 0.338900089263916 3.60831117630005 2.53823399543762 0.583317995071411 0.976073980331421 0.194580003619194 0.432372987270355 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17H9.01 /GEN=cid16 /DEF=nucleotidyltransferase (predicted) --- --- --- --- --- --- SPAC17H9.01 // |cid16||nucleotidyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.9160079496289 10.6471237117028 6.48284357522248 7.48962327201097 1.72120932850259 Max fold change at or above threshold 2 10.6471237117028 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773577_at SPBC1E8.02.S1 --- 10.6465607953641 --- --- --- --- 0.664040982723236 6.13829469680786 7.06975269317627 6.48249292373657 0.665526986122131 0.274170011281967 0.219482004642487 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1E8.02 /DEF=proline-rich protein --- --- --- --- --- --- SPBC1E8.02 // |||proline-rich protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.00257513873157 9.24384918478176 5.93744465704715 10.6465607953641 9.76218801609477 Max fold change at or above threshold 3 10.6465607953641 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1771740_at SPBC56F2.07c.S1 --- 10.6459415464433 --- --- --- --- 1.92744171619415 0.619188845157623 0.929164111614227 0.181049436330795 0.601073980331421 0.696289002895355 0.828612983226776 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC56F2.07c /DEF=AAA family ATPase --- --- --- --- --- --- SPBC56F2.07c // |||AAA family ATPase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.33679177247276 -3.11284954706103 2.10581812732407 -2.07438243912115 -10.6459415464433 Max fold change at or above threshold 0 10.6459415464433 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770348_at SPAC3A11.13.S1 --- 10.6365211622858 --- --- --- --- 0.918637633323669 9.77110862731934 3.59398078918457 8.27899169921875 0.5 0.129638999700546 0.129638999700546 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A11.13 /DEF=prefoldin (subunit 6) --- --- --- --- --- --- SPAC3A11.13 // ||SPAC3H5.02|prefoldin |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- U63916 // gb // 8 // Negative Strand Matching Probes No No 6.19069720303069 10.6365211622858 1.54059613362988 3.91229431367992 9.01224966069048 Max fold change at or above threshold 3 10.6365211622858 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1777824_at SPAC6B12.10c.S1 --- 10.6266191341727 --- --- --- --- 4.32386922836304 0.406890392303467 5.17520475387573 5.86189889907837 0.219482004642487 0.466064006090164 0.303710997104645 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6B12.10c /GEN=spp1 /DEF=DNA primase (catalytic subunit) (PMID 11027257) --- --- --- --- --- --- SPAC6B12.10c // |spp1|pri1|DNA primase catalytic subunit Spp1 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.65359259701208 -10.6266191341727 1.22474850876358 1.19689206138064 1.3557067962709 Max fold change at or above threshold 3 10.6266191341727 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772987_at SPAC186.05c.S1 --- 10.6204961753149 --- --- --- --- 3.78289866447449 0.410652160644531 4.6598539352417 3.75474452972412 0.5 0.753906011581421 0.0805663987994194 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC186.05c /DEF=hypothetical protein --- --- --- --- --- --- SPAC186.05c // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -10.6204961753149 -9.211929284719 1.34086961267823 1.23182097871211 -1.00749828238046 Max fold change at or above threshold 3 10.6204961753149 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777884_at SPBC354.10.S1 --- 10.6203435934276 --- --- --- --- 0.841395676136017 1.89928269386292 1.26382946968079 3.89069700241089 0.432372987270355 0.601073980331421 0.601073980331421 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC354.10 /DEF=sequence orphan --- --- --- --- --- --- SPBC354.10 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 10.6203435934276 2.25730027825325 2.39963299104998 1.50206318564024 4.62409911621882 Max fold change at or above threshold 1 10.6203435934276 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771727_at SPAC1002.08c.S1 --- 10.6196137612928 --- --- --- --- 3.89485192298889 6.51164388656616 1.25582420825958 0.755772769451141 0.633789002895355 0.129638999700546 0.432372987270355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1002.08c /DEF=RNA polymerase specificity factor (predicted) --- --- --- --- --- --- SPAC1002.08c // |mtf1||RNA polymerase specificity factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.24159147727993 1.67185916571872 -10.6196137612928 -3.10143083512196 -5.15346950885438 Max fold change at or above threshold 2 10.6196137612928 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779005_at SPAC5D6.08c.S1 --- 10.619606054139 --- --- --- --- 1.07974278926849 11.4664430618286 0.861675679683685 3.10308241844177 0.533936023712158 0.432372987270355 0.633789002895355 0.424072265625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5D6.08c /GEN=mes1 /DEF=meiosis II protein --- --- --- --- --- --- SPAC5D6.08c // |mes1||meiosis II protein Mes1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 3.51864960228159 10.619606054139 7.9352186062903 -1.25307330208607 2.87390890616093 Max fold change at or above threshold 2 10.619606054139 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772325_at SPCC1840.06.S1 --- 10.6157916713943 --- --- --- --- 4.26339340209961 1.101677775383 1.67245972156525 0.586328029632568 0.780517995357513 0.943848013877869 0.870360970497131 0.901123046875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1840.06 /GEN=atp5 /DEF=F0-ATPase delta subunit --- --- --- --- --- --- SPCC1840.06 // |atp5||F0-ATPase delta subunit|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -10.6157916713943 -3.86990960275789 -4.12825072623129 -2.54917553297458 -7.27134502638622 Max fold change at or above threshold 1 10.6157916713943 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776421_at SPBC800.04c.S1 --- 10.6103716275706 --- --- --- --- 9.73297595977783 2.68170118331909 1.16175055503845 0.917307734489441 0.533936023712158 0.828612983226776 0.969726979732513 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC800.04c /GEN=rpl4301 /DEF=60S ribosomal protein L37a --- --- --- --- --- --- SPBC800.04c // |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein L37a|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.29423008058433 -3.62940361152823 -3.14403797762478 -8.37785350526963 -10.6103716275706 Max fold change at or above threshold 2 10.6103716275706 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771701_at SPAC977.14c.S1 --- 10.6076433032112 --- --- --- --- 0.405662804841995 0.601784646511078 1.01782548427582 0.738984405994415 0.850341975688934 0.850341975688934 0.725830018520355 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC977.14c /DEF=aldoketo reductase --- --- --- --- --- --- SPAC977.14c // |||aldo/keto reductase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 10.6076433032112 1.48346025153938 -1.08162332516382 2.50904315635312 1.82167158825973 Max fold change at or above threshold 0 10.6076433032112 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777965_at SPAC2G11.12.S1 --- 10.6019326333018 --- --- --- --- 0.628573596477509 6.66409492492676 2.39319753646851 4.12223815917969 0.919434010982513 0.398925989866257 0.567627012729645 0.266845703125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2G11.12 /GEN=hus2 /DEF=RecQ type DNA helicase --- --- --- --- --- --- SPAC2G11.12 // |rqh1|hus2, rad12|RecQ type DNA helicase Rqh1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.02877984091169 10.6019326333018 4.96891637978079 3.80734658579338 6.55808354388489 Max fold change at or above threshold 2 10.6019326333018 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775366_at SPBC17G9.10.S1 --- 10.5941154485585 --- --- --- --- 1.29497289657593 2.34909796714783 2.14422106742859 1.25431549549103 0.665526986122131 0.805419981479645 0.567627012729645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17G9.10 /GEN=rpl1102 /DEF=60S ribosomal protein L11 --- --- --- --- --- --- AF201080 // Schizosaccharomyces pombe ribosomal protein L11 mRNA, complete cds. // gb // 10 // --- /// SPBC17G9.10 // |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 10.5941154485585 1.8140132302067 7.15940060867052 1.65580381882755 -1.03241401484001 Max fold change at or above threshold 0 10.5941154485585 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778135_at SPBC4B4.03.S1 --- 10.5927041598737 --- --- --- --- 1.07158362865448 7.07048940658569 11.3509683609009 0.936142265796661 0.805419981479645 0.466064006090164 0.432372987270355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4B4.03 /GEN=rsc1 /DEF=bromodomain protein --- --- --- --- --- --- SPBC4B4.03 // |rsc1||bromodomain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.35266484497487 6.59816855868138 2.65947372900164 10.5927041598737 -1.14468032029572 Max fold change at or above threshold 2 10.5927041598737 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774054_at SPAC3G9.15c.S1 --- 10.5924897529795 --- --- --- --- 0.601483941078186 6.37121248245239 1.20769500732422 0.669419705867767 0.850341975688934 0.601073980331421 0.904784977436066 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G9.15c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC3G9.15c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.12858734904956 10.5924897529795 -1.0820377710757 2.00785910453299 1.11294693033334 Max fold change at or above threshold 1 10.5924897529795 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775477_at SPAC6F6.02c.S1 --- 10.5913145348391 --- --- --- --- 1.22006952762604 12.92214012146 4.66590023040771 2.2504997253418 0.567627012729645 0.0676269978284836 0.171387001872063 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F6.02c /GEN=pof5 /DEF=F-box protein --- --- --- --- --- --- SPAC6F6.02c // |pof5||F-box protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.78027775158688 10.5913145348391 5.84104034467109 3.82429043981324 1.84456678441984 Max fold change at or above threshold 2 10.5913145348391 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770105_at SPAC26A3.06.S1 --- 10.5884303084251 --- --- --- --- 0.573385179042816 1.63725185394287 6.07124900817871 0.656028091907501 0.870360970497131 0.725830018520355 0.24609400331974 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26A3.06 /DEF=methyltransferase (predicted) --- --- --- --- --- --- SPAC26A3.06 // |||methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.17769316993574 2.85541362732121 -1.34725435398068 10.5884303084251 1.14413158184982 Max fold change at or above threshold 1 10.5884303084251 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771511_at SPCC16C4.09.S1 --- 10.5848903830488 --- --- --- --- 1.30575430393219 13.8212661743164 4.24857234954834 3.23213768005371 0.828612983226776 0.129638999700546 0.633789002895355 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16C4.09 /GEN=sts5 /DEF=RNB-like protein --- --- --- --- --- --- SPCC16C4.09 // |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.78575575336416 10.5848903830488 3.48390778038101 3.25373030496936 2.4753031028275 Max fold change at or above threshold 3 10.5848903830488 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773926_at YDR371W.S1 Sporulation-specific chitinase 10.5838136366523 25.5479907989502 258.890655517578 CTS2 --- 5737 // cytoplasm // inferred from direct assay --- 256.801696777344 26.8323554992676 24.2636260986328 260.979614257813 0.000244141003349796 0.0107421996071935 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR371W /GEN=CTS2 /DB_XREF=GI:6320579 /SEG=NC_001136:+1219401,1220936 /DEF=Sporulation-specific chitinase /NOTE=Cts2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002779 // span:12-34 // numtm:1 S0002779 // CTS2 SGDID:S0002779, Chr IV from 1219403-1220938, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023948 // cdna:GeneFinder chromosome:SGD1:IV:1219784:1220938:1 // ensembl // 11 // --- /// GENSCAN00000025394 // cdna:Genscan chromosome:SGD1:IV:1219934:1220938:1 // ensembl // 11 // --- /// YDR371W // cdna:known chromosome:SGD1:IV:1219403:1220938:1 gene:YDR371W // ensembl // 11 // --- --- No cerevisiae_gene -1.63209582859157 -9.5705983317176 1.2403252905152 -10.5838136366523 1.01626904157137 Max fold change at or above threshold 4 10.5838136366523 Max fold change at or above threshold 0.850425610652734 -0.856397274147842 -0.875462276906458 0.881433940401566 142.219323158264 134.73532803314 0.947377086608718 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1770970_at SPBC887.02.S1 --- 10.5781275199912 --- --- --- --- 0.925412654876709 2.31167054176331 9.78913307189941 3.92025375366211 0.962401986122131 0.725830018520355 0.601073980331421 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC887.02 /DEF=ClC chloride channel --- --- --- --- --- --- SPBC887.02 // |||ClC chloride channel|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.11438254451544 2.49798890211987 2.27894077025616 10.5781275199912 4.23622233065788 Max fold change at or above threshold 2 10.5781275199912 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779894_at SPBC16H5.08c.S1 --- 10.5675768317954 --- --- --- --- 0.657295942306519 1.24186527729034 6.62135553359985 0.227408051490784 0.5 0.725830018520355 0.149657994508743 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16H5.08c /DEF=conserved eukaryotic family --- --- --- --- --- --- SPBC16H5.08c // |||ATPase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.54932226389142 1.88935485122959 10.5675768317954 10.0736291028434 -2.89038113645311 Max fold change at or above threshold 1 10.5675768317954 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1779294_at SPBC2D10.13.S1 --- 10.5558358249487 --- --- --- --- 0.515580832958221 0.511125862598419 2.06871175765991 3.97006177902222 0.633789002895355 0.601073980331421 0.567627012729645 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2D10.13 /GEN=est1 /DEF=TPR repeat protein --- --- --- --- --- --- SPBC2D10.13 // |est1||TPR repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 10.5558358249487 -1.00871599479853 8.12082759201116 4.01239073568808 7.70017332925935 Max fold change at or above threshold 1 10.5558358249487 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770418_at SPAC31G5.14.S1 --- 10.55178949029 --- --- --- --- 1.32391977310181 13.9697227478027 8.10089683532715 6.06368255615234 0.398925989866257 0.0375977009534836 0.0561522990465164 0.14453125 A P M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31G5.14 /GEN=gcv1 /DEF=aminomethyltransferase (predicted) --- --- --- --- --- --- SPAC31G5.14 // |gcv1|n313|glycine decarboxylase T subunit|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.92220492202124 10.55178949029 8.61811204983611 6.1188729105145 4.58009818974587 Max fold change at or above threshold 3 10.55178949029 Max fold change at or above threshold AAPAMA No 4 0 APMA 2 1 1 No No x = 1
1773144_at SPAP27G11.13c.S1 --- 10.5514235825383 --- --- --- --- 4.48243570327759 2.27113389968872 3.98692083358765 1.2700731754303 0.466064006090164 0.366210997104645 0.129638999700546 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP27G11.13c /DEF=ribonucleoprotein (RNP) complex (predicted) --- --- --- --- --- --- SPAP27G11.13c // |nop10||small nuclear ribonucleoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -10.5514235825383 -1.97365540794048 -5.59303882912294 -1.12428510381132 -3.52927358044465 Max fold change at or above threshold 2 10.5514235825383 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776318_at SPCC622.07.S1 --- 10.5463303878062 --- --- --- --- 0.576331436634064 1.15608942508698 0.608392238616943 6.07818174362183 0.919434010982513 0.805419981479645 0.865478515625 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC622.07 /DEF=dubious --- --- --- --- --- --- SPCC622.07 // |||dubious|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.14607739990239 2.00594545360715 4.06366169326494 1.05562910496454 10.5463303878062 Max fold change at or above threshold 1 10.5463303878062 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777865_at SPAC1B1.01.S1 --- 10.5457961652366 --- --- --- --- 6.18238067626953 1.51577520370483 9.55408573150635 0.586241245269775 0.274170011281967 0.828612983226776 0.274170011281967 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B1.01 /GEN=rdp1 /DEF=transcription factor --- --- --- --- --- --- SPAC1B1.01 // |||transcription factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.48711559466886 -4.07869231608925 -1.04969544369848 1.5453732521161 -10.5457961652366 Max fold change at or above threshold 2 10.5457961652366 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776448_at SPAC27E2.06c.S1 --- 10.5387972033342 --- --- --- --- 8.50735759735107 2.67985796928406 0.807241797447205 1.39651727676392 0.0561522990465164 0.753906011581421 0.870360970497131 0.696289002895355 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27E2.06c /DEF=methionine-tRNA ligase (predicted) --- --- --- --- --- --- SPAC27E2.06c // |||methionine-tRNA ligase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.2755713043328 -3.1745554036298 -2.39968865365301 -10.5387972033342 -6.09183841754165 Max fold change at or above threshold 2 10.5387972033342 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1771098_at SPBC17D11.04c.S1 --- 10.5339932492479 --- --- --- --- 6.4088191986084 4.67733907699585 5.36304140090942 4.6848726272583 0.194580003619194 0.567627012729645 0.753906011581421 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17D11.04c /DEF=zinc finger protein --- --- --- --- --- --- SPBC17D11.04c // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.87905538434228 -1.3701848621855 -10.5339932492479 -1.19499715171351 -1.36798152447508 Max fold change at or above threshold 4 10.5339932492479 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-M10961-2_at AFFX-Sc-M10961-2 --- 10.5308616161346 --- --- --- --- 1.05308616161346 4.21371364593506 0.0860833674669266 0.0460438840091228 0.61132800579071 0.165039002895355 0.966796875 0.90820300579071 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL M10961 /FEA=CDS_2 /DB_XREF=AAA88685.1 GI:155175 /PROD=luciferase alpha subunit /GEN=luxA --- --- --- --- --- --- AFFX-Sc-M10961-2 // --- // affx // --- // --- --- No No 1.19548848433998 4.00129998810269 3.09531016047563 -10.5308616161346 -10.5308616161346 Max fold change at or above threshold 1 10.5308616161346 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773113_at SPBC1711.06.S1 --- 10.5295117734492 --- --- --- --- 2.64513564109802 7.97932720184326 6.24972057342529 3.04147362709045 0.432372987270355 0.149657994508743 0.334473013877869 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1711.06 /GEN=rpl401 /DEF=60S ribosomal protein L2 --- --- --- --- --- --- SPBC1711.06 // |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -10.5295117734492 3.01660416874915 2.3417380661396 2.36272215168178 1.14983654517918 Max fold change at or above threshold 4 10.5295117734492 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772276_at SPBP4H10.16c.S1 --- 10.5087757285677 --- --- --- --- 0.296607822179794 0.789914965629578 0.584051251411438 1.11897349357605 0.665526986122131 0.725830018520355 0.888427972793579 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP4H10.16c /DEF=hypothetical protein --- --- --- --- --- --- SPBP4H10.16c // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.55616160208933 2.66316295984519 10.5087757285677 1.96910265925962 3.77256906224733 Max fold change at or above threshold 0 10.5087757285677 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774724_at SPBC106.15.S1 --- 10.5043147296684 --- --- --- --- 0.710603713989258 7.23368215560913 7.46440505981445 4.55229091644287 0.725830018520355 0.149657994508743 0.111571997404099 0.21923828125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC106.15 /GEN=idi1 /DEF=isopentenyl-diphosphate delta-isomerase (PMID 7744766) --- --- --- --- --- --- U21154 // Schizosaccharomyces pombe isopentenyl diphosphate isomerase (IDI1) mRNA, complete cds. // gb // 11 // --- /// SPBC106.15 // |idi1||isopentenyl-diphosphate delta-isomerase Idi1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.86026684220839 10.1796289735104 8.33137929090807 10.5043147296684 6.40623012070507 Max fold change at or above threshold 3 10.5043147296684 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774030_at SPCC297.04c.S1 --- 10.5034877057108 --- --- --- --- 0.694551825523376 4.75391960144043 0.442223578691483 0.73612505197525 0.366210997104645 0.466064006090164 0.533936023712158 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC297.04c /DEF=SET domain --- --- --- --- --- --- SPCC297.04c // |set7||SET domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.26094639792542 6.84458585629393 10.5034877057108 -1.57058976271351 1.05985619060255 Max fold change at or above threshold 1 10.5034877057108 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777026_at SPAC3A12.14.S1 --- 10.4974785576926 --- --- --- --- 0.728167235851288 1.09157860279083 0.730590581893921 1.70070719718933 0.919434010982513 0.888427972793579 0.870360970497131 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A12.14 /GEN=cam1 /DEF=calmodulin (PMID 3035538) --- --- --- --- --- --- SPAC3A12.14 // |cam1||calmodulin |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.41906537316094 1.49907679039512 10.4974785576926 1.00332800752811 2.33559972689662 Max fold change at or above threshold 0 10.4974785576926 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769673_at SPCC338.08.S1 --- 10.4839094677153 --- --- --- --- 13.818265914917 12.5908946990967 7.01305675506592 5.18275594711304 0.0952147990465164 0.194580003619194 0.366210997104645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC338.08 /DEF=sequence orphan --- --- --- --- --- --- SPCC338.08 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -10.4839094677153 -1.09748085780658 -2.03627261610368 -1.97036276726768 -2.66620038757839 Max fold change at or above threshold 4 10.4839094677153 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771669_at SPBC365.15.S1 --- 10.4838201203997 --- --- --- --- 1.28037476539612 13.4232187271118 0.614973604679108 2.93144249916077 0.466064006090164 0.0561522990465164 0.725830018520355 0.366210997104645 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC365.15 /GEN=alp4 /DEF=gamma tubulin complex --- --- --- --- --- --- SPBC365.15 // |alp4||gamma tubulin complex|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 1.62493191697045 10.4838201203997 4.61686045851232 -2.0819995454345 2.28951911454913 Max fold change at or above threshold 2 10.4838201203997 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1769705_at SPAC3H5.11.S1 --- 10.4820138007234 --- --- --- --- 0.873283207416534 9.15376663208008 8.15037250518799 1.61722958087921 0.753906011581421 0.303710997104645 0.0952147990465164 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H5.11 /DEF=NADNADH kinase (predicted) --- --- --- --- --- --- SPAC3H5.11 // |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.13285040789322 10.4820138007234 6.50529834940487 9.33302328038522 1.85189588800582 Max fold change at or above threshold 2 10.4820138007234 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775255_at YGL053W.S1 Pheromone-regulated protein with 2 predicted transmembrane segments and an FF sequence, a motif involved in COPII binding; forms a complex with Prp9p in the ER 10.4814128832645 7.88019895553589 4.82662010192871 PRM8 747 // conjugation with cellular fusion // inferred from expression pattern 5783 // endoplasmic reticulum // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity --- 4.70473623275757 9.77901649475098 5.9813814163208 4.94850397109985 0.24609400331974 0.00585938012227416 0.149657994508743 0.0239257998764515 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL053W /GEN=PRM8 /DB_XREF=GI:6321385 /SEG=NC_001139:+402590,403303 /DEF=Pheromone-regulated protein with 2 predicted transmembrane segments and an FF sequence, a motif involved in COPII binding; forms a complex with Prp9p in the ER /NOTE=Prm8p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 12925749]; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 11062271]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12101299]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IEP] [pmid 11062271] --- --- --- --- --- S0003021 // span:46-68,75-97 // numtm:2 S0003021 // PRM8 SGDID:S0003021, Chr VII from 402592-403305, Verified ORF // sgd // 11 // --- /// GENSCAN00000019304 // cdna:Genscan chromosome:SGD1:VII:402592:403305:1 // ensembl // 11 // --- /// GENEFINDER00000021463 // cdna:GeneFinder chromosome:SGD1:VII:402592:403305:1 // ensembl // 11 // --- /// YGL053W // cdna:known chromosome:SGD1:VII:402592:403305:1 gene:YGL053W // ensembl // 11 // --- --- No cerevisiae_gene -2.58010273422512 2.07854723643439 -10.4814128832645 1.27135318972281 1.051813263546 Max fold change at or above threshold 4 10.4814128832645 Max fold change at or above threshold -0.701614533623767 1.45781195080287 -0.158321440167564 -0.597875977011539 6.3534095287323 2.34982774296237 0.369853026526252 AAPAAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1776051_at SPAC6F6.01.S1 --- 10.4681244687427 --- --- --- --- 3.32339954376221 0.595989763736725 0.802396595478058 0.317478030920029 0.466064006090164 0.780517995357513 0.633789002895355 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F6.01 /DEF=VIC sodium channel (predicted) --- --- --- --- --- --- SPAC6F6.01 // |||VIC sodium channel |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.47593502938588 -5.57626950322976 -5.81095443242006 -4.14184153134669 -10.4681244687427 Max fold change at or above threshold 1 10.4681244687427 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770153_at SPAC17A5.11.S1 --- 10.4629136005459 --- --- --- --- 0.625547111034393 5.02075958251953 6.54504537582397 3.45745873451233 0.850341975688934 0.633789002895355 0.24609400331974 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A5.11 /GEN=rec12 /DEF=Spo11Top6A topoisomerase family (PMID 12437782) --- --- --- --- --- --- AF195027 // Schizosaccharomyces pombe meiotic recombination protein Rec12 mRNA, complete cds. // gb // 11 // --- /// SPAC17A5.11 // |rec12||endonuclease Rec12p|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.01658380291682 8.02618938518842 7.07756986486534 10.4629136005459 5.52709567916498 Max fold change at or above threshold 3 10.4629136005459 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773466_at SPBC2F12.04.S1 --- 10.4545081214792 --- --- --- --- 6.19095325469971 0.869577407836914 5.49379301071167 1.27224326133728 0.633789002895355 0.932372987270355 0.696289002895355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2F12.04 /GEN=rpl1701 /DEF=60S ribosomal protein L17 --- --- --- --- --- --- SPBC2F12.04 // |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -10.4545081214792 -7.1194964345955 -3.16346835437024 -1.12689961973972 -4.86617099326765 Max fold change at or above threshold 2 10.4545081214792 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774389_at SPCC962.04.S1 --- 10.4498945341097 --- --- --- --- 1.667604804039 17.4262943267822 1.43396258354187 0.637977540493011 0.805419981479645 0.5 0.828612983226776 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC962.04 /GEN=rps1201 /DEF=40S ribosomal protein S12 --- --- --- --- --- --- SPCC962.04 // |rps1201|rps12-1, rps12|40S ribosomal protein S12|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.57423181893933 10.4498945341097 -1.28566658634055 -1.16293467010836 -2.61389265012421 Max fold change at or above threshold 1 10.4498945341097 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774591_at SPAC1F3.09.S1 --- 10.4291503508257 --- --- --- --- 5.78620672225952 8.59955310821533 8.92082118988037 4.69983243942261 0.274170011281967 0.24609400331974 0.149657994508743 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F3.09 /DEF=conserved protein --- --- --- --- --- --- SPAC1F3.09 // |||conserved protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- D89244 // gb // 2 // Cross Hyb Matching Probes No No -10.4291503508257 1.4862160169862 -2.48565599963292 1.5417391078618 -1.23115170526598 Max fold change at or above threshold 4 10.4291503508257 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771423_at SPCC777.06c.S1 --- 10.4236031765104 --- --- --- --- 0.627512037754059 2.13566017150879 3.57069683074951 1.38180875778198 0.696289002895355 0.533936023712158 0.5 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC777.06c /DEF=hydrolase (predicted) --- --- --- --- --- --- SPCC777.06c // |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 7.40670437280732 3.40337721512495 10.4236031765104 5.69024435535845 2.20204342649369 Max fold change at or above threshold 1 10.4236031765104 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777037_at SPBC3H7.07c.S1 --- 10.418547838494 --- --- --- --- 0.586349248886108 0.366689771413803 6.10890769958496 3.56373596191406 0.665526986122131 0.5 0.111571997404099 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3H7.07c /DEF=phosphoserine phosphatase (predicted) --- --- --- --- --- --- SPBC3H7.07c // |||phosphoserine phosphatase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- D89261 // gb // 8 // Cross Hyb Matching Probes No No -1.3394497399034 -1.59903355532768 4.42924710703375 10.418547838494 6.07783836797628 Max fold change at or above threshold 2 10.418547838494 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770459_at YNR075W.S1 Protein of unknown function, member of a family of conserved, often subtelomerically-encoded proteins 10.4184277882625 11.33123254776 7.27672326564789 COS10 6897 // endocytosis // inferred from mutant phenotype 5635 // nuclear membrane // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay --- 13.2788887023926 9.74182510375977 12.9206399917603 1.2745578289032 0.0676269978284836 0.219482004642487 0.0375977009534836 0.334473013877869 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR075W /GEN=COS10 /DB_XREF=GI:6324403 /SEG=NC_001146:+779913,781037 /DEF=Protein of unknown function, member of a family of conserved, often subtelomerically-encoded proteins /NOTE=Cos10p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 11378903] --- --- --- --- --- S0005358 // span:37-59,63-85 // numtm:2 S0005358 // COS10 SGDID:S0005358, Chr XIV from 779914-781038, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020533 // cdna:GeneFinder chromosome:SGD1:XIV:780085:781038:1 // ensembl // 11 // --- /// YNR075W // cdna:known chromosome:SGD1:XIV:779914:781038:1 gene:YNR075W // ensembl // 11 // --- --- No cerevisiae_gene -2.60599503783945 -1.36308017860716 -3.72054528303614 -1.0277268549283 -10.4184277882625 Max fold change at or above threshold 3 10.4184277882625 Max fold change at or above threshold 0.711838224653596 0.0784109096887971 0.647682036183265 -1.43793117052566 9.30397790670395 5.58400863851186 0.600174322693557 AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1769363_at SPAC1B3.14.S1 --- 10.4145531287591 --- --- --- --- 13.0268745422363 3.71124148368835 1.25083374977112 3.98067855834961 0.111571997404099 0.466064006090164 0.567627012729645 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B3.14 /GEN=vma3 /DEF=V-type ATPase --- --- --- --- --- --- SPAC1B3.14 // |vma3||V-type ATPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.2455597333407 -3.51011234367045 -5.504803117906 -10.4145531287591 -3.27252611615977 Max fold change at or above threshold 3 10.4145531287591 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778854_at SPBC25B2.07c.S1 --- 10.4115757573572 --- --- --- --- 7.40124797821045 0.71086722612381 7.15286064147949 6.25756597518921 0.24609400331974 0.432372987270355 0.334473013877869 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25B2.07c /DEF=sequence orphan --- --- --- --- --- --- SPBC25B2.07c // |||microtubule associated protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.25368137926118 -10.4115757573572 -3.30540916293186 -1.03472559430147 -1.18276786973655 Max fold change at or above threshold 3 10.4115757573572 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776965_at SPAC13G6.14.S1 --- 10.4095411841227 --- --- --- --- 2.7859354019165 5.35913419723511 0.375017106533051 0.656148791313171 0.533936023712158 0.567627012729645 0.953857004642487 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G6.14 /GEN=aps1 /DEF=diphosphoinositol-polyphosphate diphosphatase activity --- --- --- --- --- --- SPAC13G6.14 // |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexaphosphate hydrolase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -10.4095411841227 1.92363907416821 -4.62502052008356 -7.42882218806458 -4.24588971099211 Max fold change at or above threshold 2 10.4095411841227 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775843_at SPCC338.18.S1 --- 10.4091935529544 --- --- --- --- 0.637786448001862 0.755418479442596 6.63884258270264 4.70992565155029 0.725830018520355 0.780517995357513 0.149657994508743 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC338.18 /DEF=sequence orphan --- --- --- --- --- --- SPCC338.18 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.06517697993165 1.18443796008722 1.30754323180859 10.4091935529544 7.38480045524038 Max fold change at or above threshold 2 10.4091935529544 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778719_at SPBC6B1.07.S1 --- 10.3977422446848 --- --- --- --- 5.85211944580078 0.577408671379089 0.562825977802277 2.6248197555542 0.219482004642487 0.780517995357513 0.5 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC6B1.07 /GEN=prp1 /DEF=TPR repeat protein --- --- --- --- --- --- SPBC6B1.07 // |prp1|zer1|TPR repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.23603583751236 -10.1351429860302 -8.01818021900771 -10.3977422446848 -2.22953192630371 Max fold change at or above threshold 2 10.3977422446848 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775790_at SPAPB18E9.04c.S1 --- 10.3939550640965 --- --- --- --- 6.34485387802124 10.1568546295166 9.28894138336182 2.31753396987915 0.274170011281967 0.219482004642487 0.0239257998764515 0.303710997104645 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB18E9.04c /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPAPB18E9.04c // |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.09991947830605 1.60080197665391 -10.3939550640965 1.46401186882159 -2.73776089605802 Max fold change at or above threshold 3 10.3939550640965 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1776105_at SPBC776.18c.S1 --- 10.3822101337132 --- --- --- --- 0.798026084899902 8.28527450561523 3.95095539093018 2.81567430496216 0.601073980331421 0.398925989866257 0.5 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC776.18c /GEN=pmh1 /DEF=transcription initiation factor activity --- --- --- --- --- --- SPBC776.18c // |pmh1|mcr1|transcription initiation factor IIH subunit Pmh1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.21960830123651 10.3822101337132 1.53849721734579 4.95091008387997 3.52829858351727 Max fold change at or above threshold 3 10.3822101337132 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778225_at SPBC2A9.13.S1 --- 10.3690390600468 --- --- --- --- 0.319555133581162 3.31347966194153 0.289448499679565 0.265010505914688 0.919434010982513 0.334473013877869 0.82275390625 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2A9.13 /DEF=sequence orphan --- --- --- --- --- --- SPBC2A9.13 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.23774643410752 10.3690390600468 4.41217847606494 -1.10401378461082 -1.20582062389644 Max fold change at or above threshold 1 10.3690390600468 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774411_at SPAC1834.01.S1 --- 10.3661841090742 --- --- --- --- 1.04484868049622 10.831093788147 3.67958998680115 0.30970510840416 0.601073980331421 0.171387001872063 0.5 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1834.01 /GEN=sup45 /DEF=translation release factor (PMID 9701287) --- --- --- --- --- --- SPAC1834.01 // |sup45||translation release factor eRF1 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.48942762811264 10.3661841090742 3.53901104254665 3.52164868988842 -3.37368888062611 Max fold change at or above threshold 2 10.3661841090742 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779547_at SPAC29A4.19c.S1 --- 10.3575643537362 --- --- --- --- 1.30731284618378 13.5405769348145 10.2572355270386 5.47325468063354 0.780517995357513 0.432372987270355 0.334473013877869 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29A4.19c /DEF=P-type ATPase (PMID 12707717) --- --- --- --- --- --- SPAC29A4.19c // |||P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.02767638091704 10.3575643537362 5.18518419902002 7.84604508169627 4.18664491564564 Max fold change at or above threshold 3 10.3575643537362 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775609_at SPAC6G10.11c.S1 --- 10.346958169034 --- --- --- --- 0.627293407917023 6.37221145629883 2.79179096221924 4.60964679718018 0.850341975688934 0.274170011281967 0.194580003619194 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G10.11c /GEN=ubi3 /DEF=ubiquitin family protein --- --- --- --- --- --- SPAC6G10.11c // |ubi3||ubiquitin family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 10.2525254799944 10.1582630645813 10.346958169034 4.45053451380846 7.34847001260044 Max fold change at or above threshold 3 10.346958169034 Max fold change at or above threshold APAPAA No 4 0 AAAA 4 0 0 No No x = 1
1778855_at SPAC6G10.04c.S1 --- 10.3452396020721 --- --- --- --- 3.76091265678406 8.9254093170166 11.2014265060425 4.82364130020142 0.567627012729645 0.432372987270355 0.334473013877869 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G10.04c /DEF=20S proteasome component (alpha 6) --- --- --- --- --- --- SPAC6G10.04c // |||20S proteasome component |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -10.3452396020721 2.3732030311623 -2.62740994747066 2.97837985836682 1.28257200855233 Max fold change at or above threshold 4 10.3452396020721 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771192_at YAL067W-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /// Hypothetical protein /// Hypothetical protein /// Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 10.3450067929406 27.5655508041382 5.68064117431641 --- --- --- --- 4.81115579605103 27.8950710296631 27.2360305786133 6.55012655258179 0.194580003619194 0.030273400247097 0.00585938012227416 0.219482004642487 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL067W-A /DB_XREF=GI:33438754 /SEG=NC_001133:+2480,2707 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Yal067w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028593 // YAL067W-A SGDID:S0028593, Chr I from 2480-2707, Uncharacterized ORF // sgd // 11 // --- /// YAL067W-A // cdna:known chromosome:SGD1:I:2480:2707:1 gene:YAL067W-A // ensembl // 11 // --- S0001436 // sgd // 3 // Cross Hyb Matching Probes /// YIL174W // ensembl // 3 // Cross Hyb Matching Probes /// YIR040C // ensembl // 6 // Cross Hyb Matching Probes /// YGL260W // ensembl // 4 // Cross Hyb Matching Probes /// YHL045W // ensembl // 1 // Cross Hyb Matching Probes /// YJL222W-A // ensembl // 3 // Cross Hyb Matching Probes /// YKL223W // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 1.87428220293417 5.79799786416379 -10.3450067929406 5.66101613274891 1.36144552998223 Max fold change at or above threshold 4 10.3450067929406 Max fold change at or above threshold -0.933156622075009 0.890498764878897 0.8384338245681 -0.795775967371989 16.6230959892273 12.6580467991651 0.761473482879977 APPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1771987_at SPAC23D3.13c.S1 --- 10.3449038328365 --- --- --- --- 0.270480245351791 0.376494646072388 1.99117255210876 1.0651535987854 0.696289002895355 0.725830018520355 0.334473013877869 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23D3.13c /DEF=conserved protein --- --- --- --- --- --- SPAC23D3.13c // |||guanyl-nucleotide exchange factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.91388141511541 1.39194877460538 10.3449038328365 7.36161914345726 3.93800884571087 Max fold change at or above threshold 0 10.3449038328365 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770375_at SPBC3D6.07.S1 --- 10.3441392835905 --- --- --- --- 6.58086013793945 0.783608257770538 0.636192142963409 1.19278991222382 0.149657994508743 0.601073980331421 0.780517995357513 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3D6.07 /DEF=transferase activity, transferring hexosyl groups (predicted) --- --- --- --- --- --- SPBC3D6.07 // |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.06192991917062 -8.39815057164253 -1.50612591311393 -10.3441392835905 -5.5171996933393 Max fold change at or above threshold 1 10.3441392835905 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773505_at SPAP27G11.16.S1 --- 10.3424714418215 --- --- --- --- 3.67646145820618 1.27160489559174 3.62062644958496 2.39856934547424 0.633789002895355 0.780517995357513 0.24609400331974 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP27G11.16 /DEF=dubious --- --- --- --- --- --- SPAP27G11.16 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -9.29601911507188 -2.89119794281332 -10.3424714418215 -1.01542136682662 -1.53277263596449 Max fold change at or above threshold 2 10.3424714418215 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777373_at SPAC869.03c.S1 --- 10.3384513315034 --- --- --- --- 5.65458250045776 0.54694676399231 3.57947945594788 5.22549676895142 0.398925989866257 0.533936023712158 0.111571997404099 0.04443359375 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC869.03c /DEF=urea transporter (predicted) --- --- --- --- --- --- SPAC869.03c // |||urea transporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.51484310090575 -10.3384513315034 -1.00212771693134 -1.57972201546283 -1.08211386409343 Max fold change at or above threshold 3 10.3384513315034 Max fold change at or above threshold AAAMAP No 4 0 AAAP 3 1 0 No No x = 1
1770804_at SPBC685.08.S1 --- 10.3289218845485 --- --- --- --- 5.53388214111328 9.9669361114502 0.902121961116791 1.22724425792694 0.398925989866257 0.149657994508743 0.533936023712158 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC685.08 /DEF=hypothetical protein --- --- --- --- --- --- SPBC685.08 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -10.3289218845485 1.80107487967662 -1.51700524391588 -6.134294895407 -4.50919375288918 Max fold change at or above threshold 2 10.3289218845485 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771950_at SPAC12G12.09.S1 --- 10.3261875113257 --- --- --- --- 4.23887586593628 3.1720404624939 0.461632281541824 0.940128982067108 0.24609400331974 0.24609400331974 0.432372987270355 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12G12.09 /DEF=sequence orphan --- --- --- --- --- --- SPAC12G12.09 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.66694954973424 -1.33632465161041 -10.3261875113257 -9.18236448235094 -4.50882373247983 Max fold change at or above threshold 2 10.3261875113257 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776386_at SPBC1347.07.S1 --- 10.3188164443822 --- --- --- --- 5.95055055618286 10.1459722518921 2.89445328712463 0.576669871807098 0.219482004642487 0.24609400331974 0.432372987270355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1347.07 /GEN=rex2 /DEF=RNA exonuclease --- --- --- --- --- --- SPBC1347.07 // |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.22770443288339 1.70504765165805 -5.12733915009583 -2.05584611873083 -10.3188164443822 Max fold change at or above threshold 3 10.3188164443822 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774795_at SPCC1919.11.S1 --- 10.3138244680352 --- --- --- --- 2.59023261070251 1.03244543075562 8.08589267730713 0.25114181637764 0.567627012729645 0.366210997104645 0.274170011281967 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1919.11 /DEF=src (SH3) homology domain --- --- --- --- --- --- SPCC1919.11 // |||src |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -5.8239864352791 -2.50883246081762 -4.27290244332911 3.12168592268402 -10.3138244680352 Max fold change at or above threshold 2 10.3138244680352 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776380_at SPBC1711.10c.S1 --- 10.2981438997333 --- --- --- --- 0.520481646060944 1.33901703357697 0.637210369110107 0.217676818370819 0.981445014476776 0.943848013877869 0.870360970497131 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1711.10c /DEF=Cdc48-Ufd1-Npl4 complex component (putative) --- --- --- --- --- --- SPBC1711.10c // |npl4||Cdc48-Ufd1-Npl4 complex component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.80402423984793 2.57264985943458 10.2981438997333 1.22427058462595 -2.39107521855767 Max fold change at or above threshold 0 10.2981438997333 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774634_at SPAC13G6.07c.S1 --- 10.2925745218422 --- --- --- --- 1.7183221578598 12.4492883682251 12.1886730194092 6.10453844070435 0.633789002895355 0.303710997104645 0.194580003619194 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G6.07c /GEN=rps601 /DEF=40S ribosomal protein S6 --- --- --- --- --- --- SPAC13G6.07c // |rps601|rps6-1|40S ribosomal protein S6|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 10.2925745218422 7.24502580105868 -1.05148825867505 7.09335729837202 3.55261579604353 Max fold change at or above threshold 3 10.2925745218422 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776184_at SPBC1921.04c.S1 --- 10.2921784065274 --- --- --- --- 8.17615413665771 4.57700490951538 1.1088650226593 1.80323386192322 0.0952147990465164 0.366210997104645 0.366210997104645 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1921.04c /DEF=dubious --- --- --- --- --- --- SPBC1921.04c // |||dubious|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- AJ577641 // gb // 6 // Negative Strand Matching Probes /// SPSNORNA.34 // sanger // 6 // Negative Strand Matching Probes No No -1.27790662446885 -1.78635467916145 -10.2921784065274 -7.37344398964763 -4.53416182410058 Max fold change at or above threshold 2 10.2921784065274 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776963_at SPAC806.03c.S1 --- 10.2842274569041 --- --- --- --- 12.9045562744141 6.4677791595459 1.25479102134705 5.66343927383423 0.144775390625 0.274170011281967 0.303710997104645 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC806.03c /GEN=rps2601 /DEF=40S ribosomal protein S26 --- --- --- --- --- --- SPAC806.03c // |rps2601|rps26-1, rps26|40S ribosomal protein S26|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.02720769372141 -1.99520669399604 -4.39823552570795 -10.2842274569041 -2.27857237457011 Max fold change at or above threshold 3 10.2842274569041 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1773634_at SPBC409.17c.S1 --- 10.2822609300802 --- --- --- --- 8.64983558654785 0.841238677501678 12.9251708984375 9.29360961914063 0.0771484375 0.432372987270355 0.0805663987994194 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC409.17c /DEF=sequence orphan --- --- --- --- --- --- SPBC409.17c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.73740169659866 -10.2822609300802 -2.12057501420632 1.49426781227364 1.07442615829531 Max fold change at or above threshold 3 10.2822609300802 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772924_at SPBC3H7.05c.S1 --- 10.2799033229263 --- --- --- --- 1.22423803806305 9.93760776519775 12.5850486755371 3.68999862670898 0.533936023712158 0.194580003619194 0.0805663987994194 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3H7.05c /DEF=sequence orphan --- --- --- --- --- --- SPBC3H7.05c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.82719912737071 8.11738196022787 5.20284492572436 10.2799033229263 3.01411858803798 Max fold change at or above threshold 3 10.2799033229263 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1771672_at SPBC2G5.06c.S1 --- 10.2704648826821 --- --- --- --- 8.76747512817383 1.59140563011169 4.06561326980591 5.65269660949707 0.0952147990465164 0.525634765625 0.303710997104645 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G5.06c /GEN=hmt2 /DEF=sulfide-quinone oxidoreductase --- --- --- --- --- --- SPBC2G5.06c // |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.43788843190813 -5.50926486766198 -10.2704648826821 -2.15649510820108 -1.55102524226112 Max fold change at or above threshold 3 10.2704648826821 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773054_at SPBC17A3.02.S1 --- 10.2701367174485 --- --- --- --- 1.25050890445709 12.8428974151611 2.01898670196533 6.55171918869019 0.665526986122131 0.00805663969367743 0.5 0.0461426004767418 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17A3.02 /DEF=hypothetical protein --- --- --- --- --- --- SPBC17A3.02 // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.22987467432168 10.2701367174485 6.26780002228783 1.61453204752818 5.23924233193254 Max fold change at or above threshold 2 10.2701367174485 Max fold change at or above threshold AAPMAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1775038_s_at YLR157W-C.S1 Note: YLR156W, YLR159W, and YLR161W are identical. /// Note: YLR156W, YLR159W, and YLR161W are identical. /// Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /// YLR156W, YLR159W, and YLR161W are three identical open reading frames encoded near the ribosomal DNA region of chromosome 12. 10.2662875755876 419.128128051758 46.6991844177246 --- --- --- --- 45.1025695800781 375.220306396484 463.035949707031 48.2957992553711 0.0107421996071935 0.000732421991415322 0.000732421991415322 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR157W-C /GEN=ASP3-2 /DB_XREF=GI:33438837 /SEG=NC_001144:+481874,482038 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ylr157w-cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004146 // YLR156W SGDID:S0004146, Chr XII from 472114-472458, Uncharacterized ORF // sgd // 11 // --- /// S0028678 // YLR157W-C SGDID:S0028678, Chr XII from 481874-482038, Uncharacterized ORF // sgd // 11 // --- /// S0004149 // YLR159W SGDID:S0004149, Chr XII from 485346-485690, Uncharacterized ORF // sgd // 11 // --- /// S0004151 // YLR161W SGDID:S0004151, Chr XII from 488998-489342, Uncharacterized ORF // sgd // 11 // --- /// YLR156W // cdna:known chromosome:SGD1:XII:472114:472458:1 gene:YLR156W // ensembl // 11 // --- /// YLR157W-C // cdna:known chromosome:SGD1:XII:481874:482038:1 gene:YLR157W-C // ensembl // 11 // --- /// YLR159W // cdna:known chromosome:SGD1:XII:485346:485690:1 gene:YLR159W // ensembl // 11 // --- /// YLR161W // cdna:known chromosome:SGD1:XII:488998:489342:1 gene:YLR161W // ensembl // 11 // --- --- No cerevisiae_gene -1.33573184427725 8.31926672670596 1.31210125575048 10.2662875755876 1.07079928494148 Max fold change at or above threshold 4 10.2662875755876 Max fold change at or above threshold -0.861542283315686 0.652800633312936 1.05563569058364 -0.84689404058089 232.913656234741 217.994044275881 0.935943593003307 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1770667_at SPBC15C4.04c.S1 --- 10.2653344425397 --- --- --- --- 10.4013671875 1.30175626277924 1.01325166225433 7.73637628555298 0.000244141003349796 0.696289002895355 0.828612983226776 0.111571997404099 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC15C4.04c /DEF=amino acid permease family --- --- --- --- --- --- SPBC15C4.04c // |||amino acid permease family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.7373831052388 -7.99025707415703 -1.67086258056441 -10.2653344425397 -1.34447534654224 Max fold change at or above threshold 2 10.2653344425397 Max fold change at or above threshold PAAPAA No 3 0 PAAA 3 1 0 No No x = 1
1773799_at SPCC1442.14c.S1 --- 10.264910981643 --- --- --- --- 6.01537942886353 5.77148389816284 1.08893084526062 0.671568274497986 0.633789002895355 0.567627012729645 0.805419981479645 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1442.14c /DEF=HIT family --- --- --- --- --- --- SPCC1442.14c // |||HIT family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -8.87411062209762 -1.04225872150112 -10.264910981643 -5.5241151952343 -8.95721203232862 Max fold change at or above threshold 2 10.264910981643 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779303_at SPBP35G2.14.S1 --- 10.2613577186366 --- --- --- --- 2.27233409881592 2.39526963233948 0.334844380617142 0.316592812538147 0.5 0.696289002895355 0.888427972793579 0.5927734375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP35G2.14 /DEF=RNA-binding protein --- --- --- --- --- --- SPBP35G2.14 // |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -3.7767908021053 1.05410099403412 -10.2613577186366 -6.78623931101321 -7.17746584516071 Max fold change at or above threshold 0 10.2613577186366 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778621_at SPCC736.04c.S1 --- 10.2561439338107 --- --- --- --- 14.0529565811157 9.17938709259033 14.0198564529419 10.7458362579346 0.171387001872063 0.24609400331974 0.0461426004767418 0.0952147990465164 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC736.04c /GEN=gma12 /DEF=galactosyltransferase --- --- --- --- --- --- SPCC736.04c // |gma12||alpha-1,2-galactosyltransferase Gma12 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -10.2561439338107 -1.53092537000203 -1.46160686371131 -1.00236094629677 -1.307758302267 Max fold change at or above threshold 4 10.2561439338107 Max fold change at or above threshold AAAPPA No 4 0 AAPA 3 1 0 No No x = 1
1775742_at YNR068C.S1 Hypothetical protein 10.2527072431078 1271.59240722656 143.600959777832 --- --- --- --- 125.12126159668 1260.35314941406 1282.83166503906 162.080657958984 0.00585938012227416 0.000732421991415322 0.000732421991415322 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR068C /GEN=DSE4 /DB_XREF=GI:6324396 /SEG=NC_001146:-760064,760882 /DEF=Hypothetical ORF /NOTE=Ynr068cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005351 // YNR068C SGDID:S0005351, Chr XIV from 760883-760065, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020094 // cdna:Genscan chromosome:SGD1:XIV:760065:760883:-1 // ensembl // 11 // --- /// YNR068C // cdna:known chromosome:SGD1:XIV:760065:760883:-1 gene:YNR068C // ensembl // 11 // --- --- No cerevisiae_gene -1.00009830298076 10.0730533990037 2.22269558571537 10.2527072431078 1.29538861653618 Max fold change at or above threshold 4 10.2527072431078 Max fold change at or above threshold -0.894072636833149 0.848455423900372 0.88295889817778 -0.837341685245003 707.596683502197 651.485570533369 0.920701842904194 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1774681_at SPBP4H10.03.S1 --- 10.2370368464961 --- --- --- --- 4.19860982894897 0.929484248161316 0.703369498252869 7.23430824279785 0.366210997104645 0.870360970497131 0.805419981479645 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP4H10.03 /GEN=oxa102 /DEF=involved in protein targeting --- --- --- --- --- --- X94124 // S.pombe mRNA for oxa1Sp2 protein. // gb // 11 // --- /// SPBP4H10.03 // |oxa102|oxa1, oxa1-2, oxa1sp2|OXA1/oxaA family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -10.2370368464961 -4.51713930306465 -2.71511216332443 -5.96928049819916 1.72302465280724 Max fold change at or above threshold 2 10.2370368464961 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772274_at SPCC1235.11.S1 --- 10.2362880557364 --- --- --- --- 1.58193123340607 3.02887773513794 0.278281599283218 0.154541492462158 0.432372987270355 0.633789002895355 0.932372987270355 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1235.11 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC1235.11 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.74808260979816 1.91467092322113 -2.36380722170466 -5.68464187887634 -10.2362880557364 Max fold change at or above threshold 1 10.2362880557364 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773186_at SPAC13F5.02c.S1 --- 10.2328583662954 --- --- --- --- 0.543146848678589 5.55794477462769 2.02796792984009 2.18910884857178 0.633789002895355 0.303710997104645 0.567627012729645 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13F5.02c /GEN=ptr6 /DEF=transcription initiation factor activity --- --- --- --- --- --- SPAC13F5.02c // |ptr6|taf7|TFIID subunit TAF7|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.9462247641682 10.2328583662954 1.19655095444803 3.73373781837065 4.03041802396095 Max fold change at or above threshold 1 10.2328583662954 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770365_at SPAC3G9.14.S1 --- 10.2272496766095 --- --- --- --- 8.13566780090332 14.2371311187744 11.0496702194214 8.21438598632813 0.274170011281967 0.0561522990465164 0.171387001872063 0.0676269978284836 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G9.14 /GEN=sak1 /DEF=RFX domain --- --- --- --- --- --- SPAC3G9.14 // |sak1||RFX domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.64966045196495 1.74996465774987 -10.2272496766095 1.35817618047218 1.00967568825955 Max fold change at or above threshold 4 10.2272496766095 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1777071_at SPAC24B11.14.S1 --- 10.225679694988 --- --- --- --- 5.17633247375488 0.523310303688049 0.566288948059082 1.23001408576965 0.366210997104645 0.980224609375 0.962401986122131 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24B11.14 /DEF=sequence orphan --- --- --- --- --- --- SPAC24B11.14 // ||SPAC806.10|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -10.225679694988 -9.89151644306348 -8.2264986541213 -9.14079727583669 -4.20835219176853 Max fold change at or above threshold 1 10.225679694988 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772601_at SPBP8B7.22.S1 --- 10.2247473279472 --- --- --- --- 0.817177593708038 0.756629109382629 0.686743915081024 2.09336733818054 0.888427972793579 0.79931640625 0.753906011581421 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.22 /GEN=erd2 /DEF=HDEL sequence binding (predicted) --- --- --- --- --- --- SPBP8B7.22 // |erd2||HDEL sequence binding |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.6283920491409 -1.08002399534273 10.2247473279472 -1.18993059241249 2.56170427860319 Max fold change at or above threshold 0 10.2247473279472 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771676_at SPBC16D10.07c.S1 --- 10.2182301501748 --- --- --- --- 1.11448454856873 11.3880596160889 3.45995569229126 1.63244187831879 0.601073980331421 0.274170011281967 0.567627012729645 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16D10.07c /GEN=sir2 /DEF=transcriptional regulator --- --- --- --- --- --- SPBC16D10.07c // |sir2||Sir2p family histone deacetylase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -5.66506934071125 10.2182301501748 3.78888121840964 3.10453446549322 1.46475057049041 Max fold change at or above threshold 2 10.2182301501748 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770526_at SPBC530.02.S1 --- 10.217242316492 --- --- --- --- 11.6473808288574 3.67911005020142 6.51487493515015 1.13997304439545 0.0805663987994194 0.366210997104645 0.0107421996071935 0.24609400331974 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC530.02 /DEF=transporter --- --- --- --- --- --- SPBC530.02 // |||membrane transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.13067827600034 -3.1658147405022 -1.70916247405258 -1.78781341849181 -10.217242316492 Max fold change at or above threshold 3 10.217242316492 Max fold change at or above threshold AAAPPA No 4 0 AAPA 3 1 0 No No x = 1
1779363_at SPCC576.16c.S1 --- 10.2034970199549 --- --- --- --- 0.247365534305573 0.798736989498138 0.364875882863998 0.287143915891647 0.805419981479645 0.780517995357513 0.533936023712158 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC576.16c /GEN=wtf22 /DEF=wtf element --- --- --- --- --- --- SPCC576.16c // |wtf22||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 10.2034970199549 3.22897444763446 7.57416258142866 1.47504737831934 1.16080810003602 Max fold change at or above threshold 0 10.2034970199549 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772557_at SPBC4C3.05c.S1 --- 10.2005759212691 --- --- --- --- 6.91147518157959 12.8834056854248 5.00597095489502 4.98994255065918 0.171387001872063 0.0561522990465164 0.274170011281967 0.0952147990465164 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4C3.05c /GEN=nuc1 /DEF=localization DNA-directed RNA polymerase I complex (large subunit) (PMID 2537310) --- --- --- --- --- --- SPBC4C3.05c // |nuc1|rpa1|DNA-directed RNA polymerase I complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.3711764318021 1.86406018208118 -10.2005759212691 -1.38064628098197 -1.38508111294118 Max fold change at or above threshold 4 10.2005759212691 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1776804_at SPAC1399.01c.S1 --- 10.1990313984039 --- --- --- --- 12.405704498291 12.8438558578491 9.71523571014404 3.20936369895935 0.194580003619194 0.149657994508743 0.171387001872063 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1399.01c /DEF=purine permease (predicted) --- --- --- --- --- --- SPAC1399.01c // |||purine permease |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -10.1990313984039 1.03531853911388 -1.78409442902 -1.2769329400148 -3.86547168284904 Max fold change at or above threshold 4 10.1990313984039 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1779672_at SPCC23B6.05c.S1 --- 10.1987750420751 --- --- --- --- 5.06306552886963 4.32459163665771 0.650691390037537 1.60970461368561 0.466064006090164 0.334473013877869 0.870360970497131 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC23B6.05c /GEN=ssb3 /DEF=DNA replication factor A complex (subunit 3) --- --- --- --- --- --- SPCC23B6.05c // |ssb3|rpa3|DNA replication factor A complex |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -10.1987750420751 -1.17076153178307 -1.32364737909101 -7.78105505372916 -3.14533827251519 Max fold change at or above threshold 2 10.1987750420751 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776439_at SPAC110.01.S1 --- 10.1909834503104 --- --- --- --- 1.52653419971466 8.64769649505615 15.556884765625 5.73622417449951 0.888427972793579 0.303710997104645 0.194580003619194 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC110.01 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPAC110.01 // ||SPAC140.05|serine/threonine protein kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.91041925198218 5.66492155673458 4.54026454420316 10.1909834503104 3.75767812838502 Max fold change at or above threshold 3 10.1909834503104 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770761_at SPAC24H6.02c.S1 --- 10.1845946281692 --- --- --- --- 0.912115156650543 9.28952312469482 3.25252842903137 0.366630762815475 0.780517995357513 0.0676269978284836 0.303710997104645 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24H6.02c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC24H6.02c // |||mitochondrial protein import protein Tim15|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.94397138867758 10.1845946281692 2.51292195593826 3.56591862915124 -2.48783039820804 Max fold change at or above threshold 2 10.1845946281692 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774302_at SPAC1782.09c.S1 --- 10.1840614077423 --- --- --- --- 2.67461228370667 5.28900003433228 7.26421403884888 0.262627273797989 0.753906011581421 0.601073980331421 0.274170011281967 0.916015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1782.09c /GEN=clp1 /DEF=Cdc14-related protein phosphatase --- --- --- --- --- --- SPAC1782.09c // |flp1|clp1|Cdc14-related protein phosphatase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.01655042257206 1.97748289221285 -1.04139296165088 2.71598769029118 -10.1840614077423 Max fold change at or above threshold 3 10.1840614077423 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771235_at SPAC13G7.01c.S1 --- 10.1836847455541 --- --- --- --- 9.81352043151855 0.963651239871979 7.6640625 3.42347264289856 0.0461426004767418 0.953857004642487 0.366210997104645 0.194580003619194 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G7.01c /GEN=erg7 /DEF=lanosterol synthase activity (predicted) --- --- --- --- --- --- U41368 // Schizosaccharomyces pombe lanosterol synthase mRNA, complete cds. // gb // 11 // --- /// SPAC13G7.01c // |erg7|SPAC4G9.21c|lanosterol synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.41693981088497 -10.1836847455541 -2.08353140628047 -1.28045934274656 -2.86653975514457 Max fold change at or above threshold 3 10.1836847455541 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1773697_at SPCC1442.01.S1 --- 10.1783230285656 --- --- --- --- 0.395517498254776 0.442038595676422 1.0127717256546 4.02570486068726 0.976073980331421 0.780517995357513 0.753906011581421 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1442.01 /GEN=ste6 /DEF=guanyl-nucleotide exchange factor activity --- --- --- --- --- --- SPCC1442.01 // |ste6|SPCC1450.17|guanyl-nucleotide exchange factor activity|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.25877066903065 1.11762083252175 1.85139915901642 2.56062432161274 10.1783230285656 Max fold change at or above threshold 1 10.1783230285656 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773387_at SPAC17G6.03.S1 --- 10.1778589164481 --- --- --- --- 0.725329875946045 1.27957034111023 2.76624345779419 0.772971868515015 0.943848013877869 0.665526986122131 0.5 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G6.03 /DEF=calcineurin-like phosphoesterase (predicted) --- --- --- --- --- --- SPAC17G6.03 // |||calcineurin-like phosphoesterase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.46399807511141 1.76412193064747 10.1778589164481 3.81377294598018 1.06568320725357 Max fold change at or above threshold 1 10.1778589164481 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770991_at SPAC1952.13.S1 --- 10.174522314334 --- --- --- --- 0.446531981229782 4.54324960708618 1.20001459121704 0.467338353395462 0.633789002895355 0.219482004642487 0.533936023712158 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1952.13 /GEN=ned1 /DEF=nuclear elongation and deformation protein --- --- --- --- --- --- SPAC1952.13 // |ned1||nuclear elongation and deformation protein Ned1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.16522892717922 10.174522314334 10.1096931234715 2.68741017812904 1.04659548036935 Max fold change at or above threshold 1 10.174522314334 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778329_at SPAP7G5.03.S1 --- 10.1707998090857 --- --- --- --- 1.15641236305237 11.7616386413574 8.27633571624756 4.84336709976196 0.696289002895355 0.129638999700546 0.0952147990465164 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP7G5.03 /DEF=conserved fungal protein --- --- --- --- --- --- SPAP7G5.03 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.8689621047575 10.1707998090857 -1.58666426666691 7.15690698290534 4.18826990657366 Max fold change at or above threshold 3 10.1707998090857 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771704_at SPBC1711.14.S1 --- 10.1651574883607 --- --- --- --- 1.95676732063293 0.242496997117996 1.14804542064667 0.801021218299866 0.366210997104645 0.993896484375 0.398925989866257 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1711.14 /GEN=rec15 /DEF=involved in meiotic recombination (required) (PMID 8559063) --- --- --- --- --- --- SPBC1711.14 // |rec15||meiotic recombination prtoein Rec15|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -10.1651574883607 -8.06924351183118 -7.50864455334016 -1.70443371441762 -2.44284080861939 Max fold change at or above threshold 0 10.1651574883607 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778072_at SPAC2C4.15c.S1 --- 10.1648059022471 --- --- --- --- 1.14979028701782 11.6873950958252 8.01129055023193 2.1596577167511 0.780517995357513 0.274170011281967 0.0676269978284836 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2C4.15c /DEF=UBX domain --- --- --- --- --- --- SPAC2C4.15c // |ubx2||UBX domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.437117138787 10.1648059022471 -1.41700198465546 6.96761021612957 1.87830575813311 Max fold change at or above threshold 2 10.1648059022471 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773731_at SPAC1B3.20.S1 --- 10.161850395273 --- --- --- --- 2.76798439025879 2.00462126731873 3.74376487731934 0.380434334278107 0.805419981479645 0.904784977436066 0.601073980331421 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B3.20 /DEF=sequence orphan --- --- --- --- --- --- SPAC1B3.20 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.78629485962996 -1.38080166831768 -10.161850395273 1.35252384026968 -7.2758532573333 Max fold change at or above threshold 2 10.161850395273 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779314_at SPAC3H8.04.S1 --- 10.1476343073947 --- --- --- --- 0.343513876199722 0.377965658903122 1.63500452041626 3.07522678375244 0.753906011581421 0.8447265625 0.665526986122131 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H8.04 /DEF=hypothetical protein --- --- --- --- --- --- SPAC3H8.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 10.1476343073947 1.10029225917898 1.7927790718587 4.75964621430796 8.95226364004136 Max fold change at or above threshold 1 10.1476343073947 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780092_at SPBC14C8.13.S1 --- 10.1464032704851 --- --- --- --- 5.06520986557007 0.499212354421616 6.5828652381897 5.43541526794434 0.423095703125 0.976073980331421 0.601073980331421 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14C8.13 /DEF=dubious --- --- --- --- --- --- SPBC14C8.13 // |||SRR1 family protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- AB012696 // gb // 2 // Negative Strand Matching Probes /// SPBC14C8.14c // sanger // 2 // Negative Strand Matching Probes No No -7.69723758507437 -10.1464032704851 -5.30913417814963 1.29962339427151 1.0730878704337 Max fold change at or above threshold 3 10.1464032704851 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777483_at SPBC16G5.06.S1 --- 10.1454140112485 --- --- --- --- 6.07322835922241 3.205979347229 1.57260036468506 1.53670763969421 0.24609400331974 0.5 0.334473013877869 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16G5.06 /DEF=serine-rich protein --- --- --- --- --- --- SPBC16G5.06 // |||serine-rich protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.43306263545086 -1.89434419297543 -10.1454140112485 -3.86190191456472 -3.95210396717421 Max fold change at or above threshold 2 10.1454140112485 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778839_at SPAC12G12.07c.S1 --- 10.1416126100183 --- --- --- --- 3.36811542510986 1.6321929693222 4.93842458724976 0.332108467817307 0.432372987270355 0.567627012729645 0.274170011281967 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12G12.07c /DEF=sequence orphan --- --- --- --- --- --- SPAC12G12.07c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.29564873739159 -2.0635522198754 -1.38588844200884 1.46622783483992 -10.1416126100183 Max fold change at or above threshold 2 10.1416126100183 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777803_at SPBPB2B2.09c.S1 --- 10.1401747224067 --- --- --- --- 3.5795214176178 6.86203145980835 2.49027585983276 1.06210076808929 0.334473013877869 0.303710997104645 0.432372987270355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB2B2.09c /DEF=ketopantoate reductase (predicted) --- --- --- --- --- --- SPBPB2B2.09c // |||2-dehydropantoate 2-reductase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -10.1401747224067 1.91702483634672 -2.48169113215662 -1.43739955695438 -3.37022768946614 Max fold change at or above threshold 2 10.1401747224067 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774524_at SPBC4F6.06.S1 --- 10.1377456337635 --- --- --- --- 8.19293689727783 0.808161616325378 2.06783199310303 1.56584930419922 0.567627012729645 0.991943001747131 0.753906011581421 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4F6.06 /GEN=kin1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPBC4F6.06 // |kin1||microtubule affinity-regulating kinase Kin1 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.18025905758232 -10.1377456337635 1.28833685624014 -3.9620902107155 -5.23226397029804 Max fold change at or above threshold 1 10.1377456337635 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769454_at SPAC823.11.S1 --- 10.1369046334052 --- --- --- --- 6.91308116912842 2.22740626335144 5.07498979568481 0.977075159549713 0.432372987270355 0.665526986122131 0.274170011281967 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC823.11 /DEF=sphingosine-1-phosphate phosphatase activity (predicted) --- --- --- --- --- --- SPAC823.11 // |||sphingosine-1-phosphate phosphatase activity |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.11914996433611 -3.10364628261695 -10.1369046334052 -1.3621862205529 -7.07528085384376 Max fold change at or above threshold 2 10.1369046334052 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773188_at SPCC4G3.11.S1 --- 10.1349253014593 --- --- --- --- 0.329659223556519 1.02975332736969 1.65228939056396 0.513147294521332 0.870360970497131 0.805419981479645 0.805419981479645 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4G3.11 /DEF=conserved fungal protein --- --- --- --- --- --- SPCC4G3.11 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.52079586111431 3.1236903256042 10.1349253014593 5.01211333551748 1.55659923294503 Max fold change at or above threshold 0 10.1349253014593 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773942_at SPAC16E8.07c.S1 --- 10.1301896650567 --- --- --- --- 0.659269630908966 5.41571998596191 6.67852640151978 2.60170698165894 0.753906011581421 0.533936023712158 0.2392578125 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16E8.07c /GEN=vph1 /DEF=ATP synthase (subunit) (predicted) --- --- --- --- --- --- SPAC16E8.07c // |vph1||ATP synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.49533162837934 8.21472692211684 -1.72965233949022 10.1301896650567 3.94634738152862 Max fold change at or above threshold 3 10.1301896650567 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771099_at SPCC63.04.S1 --- 10.1293537713588 --- --- --- --- 0.915779888629913 6.56390953063965 6.48052930831909 3.09644603729248 0.601073980331421 0.0375977009534836 0.24609400331974 0.334473013877869 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC63.04 /GEN=mok14 /DEF=a-1,3-glucan synthase --- --- --- --- --- --- SPCC63.04 // |mok14||alpha-1,3-glucan synthase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.35934859635399 7.16756243736672 10.1293537713588 7.07651411521444 3.38121209663715 Max fold change at or above threshold 3 10.1293537713588 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1771548_at SPBC354.09c.S1 --- 10.1290557048791 --- --- --- --- 7.11843204498291 9.04616260528564 6.80336904525757 4.7463436126709 0.274170011281967 0.334473013877869 0.398925989866257 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC354.09c /DEF=protease (predicted) --- --- --- --- --- --- SPBC354.09c // |||protease |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -10.1290557048791 1.27080831117316 -1.69506114328369 -1.04630984996249 -1.49977174555577 Max fold change at or above threshold 4 10.1290557048791 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772760_at SPCC594.06c.S1 --- 10.1212132540023 --- --- --- --- 0.255115389823914 0.234157890081406 0.231997847557068 2.19716906547546 0.951171875 0.665526986122131 0.850341975688934 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC594.06c /DEF=SNARE (predicted) --- --- --- --- --- --- SPCC594.06c // |||SNARE |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 10.1212132540023 -1.08950157406706 -1.86586910376292 -1.09964550322459 8.61245206332711 Max fold change at or above threshold 0 10.1212132540023 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777086_at YLL010C.S1 Plasma membrane associated protein phosphatase involved in the general stress response; required along with binding partner Whi2p for full activation of STRE-mediated gene expression, possibly through dephosphorylation of Msn2p 10.1142654492209 302.187454223633 32.977819442749 PSR1 6950 // response to stress // inferred from genetic interaction 5886 // plasma membrane // inferred from direct assay 4721 // phosphoprotein phosphatase activity // inferred from direct assay /// 4721 // phosphoprotein phosphatase activity // inferred from sequence similarity 35.4859428405762 245.460662841797 358.914245605469 30.4696960449219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL010C /GEN=PSR1 /DB_XREF=GI:6323019 /SEG=NC_001144:-129329,130612 /DEF=Plasma membrane Sodium Response 1 /NOTE=Psr1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 10777497]; go_function: phosphoprotein phosphatase activity [goid GO:0004721] [evidence IDA,ISS] [pmid 10777497]; go_process: response to stress [goid GO:0006950] [evidence IGI] [pmid 10777497] --- --- --- --- --- --- S0003933 // PSR1 SGDID:S0003933, Chr XII from 130612-129329, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017726 // cdna:Genscan chromosome:SGD1:XII:129329:130018:-1 // ensembl // 11 // --- /// GENEFINDER00000024826 // cdna:GeneFinder chromosome:SGD1:XII:129329:130612:-1 // ensembl // 11 // --- /// YLL010C // cdna:known chromosome:SGD1:XII:129329:130612:-1 gene:YLL010C // ensembl // 11 // --- --- No cerevisiae_gene 2.96212483043404 6.91712388605683 1.43972997584394 10.1142654492209 -1.16463068053776 Max fold change at or above threshold 4 10.1142654492209 Max fold change at or above threshold -0.814428197096139 0.480148733465966 1.17963479985822 -0.845355336228042 167.582636833191 162.195629355182 0.967854620384266 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769701_at SPAC227.17c.S1 --- 10.1069505333943 --- --- --- --- 3.68546438217163 0.59371691942215 1.02957022190094 0.364646524190903 0.567627012729645 0.919434010982513 0.725830018520355 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC227.17c /DEF=hypothetical protein --- --- --- --- --- --- SPAC227.17c // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.97742634664885 -6.20744375241757 -8.47885474265285 -3.57961439032978 -10.1069505333943 Max fold change at or above threshold 1 10.1069505333943 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774706_at SPBC409.18.S1 --- 10.0961663632803 --- --- --- --- 6.5836935043335 1.007688164711 4.79270267486572 2.92309379577637 0.194580003619194 0.904784977436066 0.5 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC409.18 /DEF=phosphatidic acid phosphatase (predicted) --- --- --- --- --- --- SPBC409.18 // |||phosphatidic acid phosphatase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.89640876759374 -6.53346316340004 -10.0961663632803 -1.37369120326621 -2.25230319801793 Max fold change at or above threshold 3 10.0961663632803 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773079_at SPAC14C4.11.S1 --- 10.0937294651282 --- --- --- --- 3.04975128173828 1.87519097328186 5.73264837265015 0.545068800449371 0.274170011281967 0.533936023712158 0.334473013877869 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC14C4.11 /DEF=polyphosphate synthetase (predicted) --- --- --- --- --- --- SPAC14C4.11 // |||polyphosphate synthetase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -10.0937294651282 -1.62636836737795 -1.28342450304813 1.87971012815926 -5.59516758109063 Max fold change at or above threshold 2 10.0937294651282 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777006_at SPBC24C6.03.S1 --- 10.0881667454333 --- --- --- --- 0.64132422208786 0.885751128196716 6.46978569030762 1.03480815887451 0.665526986122131 0.567627012729645 0.0805663987994194 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC24C6.03 /DEF=proline-tRNA ligase (predicted) --- --- --- --- --- --- SPBC24C6.03 // |||proline-tRNA ligase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 3.86911451921929 1.38112844905984 3.27459398018613 10.0881667454333 1.61354915849841 Max fold change at or above threshold 1 10.0881667454333 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779116_at SPAC31G5.08.S1 --- 10.0881317847112 --- --- --- --- 1.09924077987671 10.624755859375 11.0892858505249 1.57182621955872 0.39013671875 0.018554700538516 0.0561522990465164 0.219482004642487 A P M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31G5.08 /GEN=ups1 /DEF=uroporphyrinogen-III synthase --- --- --- --- --- --- SPAC31G5.08 // |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- AB084886 // gb // 7 // Negative Strand Matching Probes /// AB084887 // gb // 8 // Negative Strand Matching Probes No No 6.46157182982508 9.66554011994231 3.5678736810142 10.0881317847112 1.42991985771763 Max fold change at or above threshold 2 10.0881317847112 Max fold change at or above threshold APPAMA No 4 0 APMA 2 1 1 No No x = 1
1770262_at SPBC3F6.04c.S1 --- 10.0863316070965 --- --- --- --- 5.96129512786865 11.0444507598877 11.6164770126343 5.62556314468384 0.194580003619194 0.149657994508743 0.0805663987994194 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3F6.04c /DEF=ribonucleoprotein (RNP) complex (PMID 12068309) (predicted) --- --- --- --- --- --- SPBC3F6.04c // |||ribonucleoprotein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.08259746676492 1.85269316868001 -10.0863316070965 1.94864987615326 -1.05967971108849 Max fold change at or above threshold 4 10.0863316070965 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773215_at SPBC1709.04c.S1 --- 10.0829837074024 --- --- --- --- 5.82884693145752 0.578087508678436 7.87942218780518 1.77288818359375 0.219482004642487 0.919434010982513 0.0676269978284836 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1709.04c /GEN=cyp3 /DEF=cyclophilin (PMID 12651004) --- --- --- --- --- --- SPBC1709.04c // |cyp3||cyclophilin |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.65118314968886 -10.0829837074024 -1.77784477673893 1.35179775356271 -3.28776906823424 Max fold change at or above threshold 2 10.0829837074024 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770143_at SPCC777.14.S1 --- 10.076152566206 --- --- --- --- 4.37084531784058 7.35431289672852 2.13569498062134 0.433781176805496 0.466064006090164 0.014160200022161 0.601073980331421 0.805419981479645 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC777.14 /GEN=prp4 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPCC777.14 // |prp4||serine/threonine protein kinase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.35938067485222 1.68258365646349 -2.144121909777 -2.04656814643492 -10.076152566206 Max fold change at or above threshold 2 10.076152566206 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1770354_at SPAC57A7.09.S1 --- 10.0759812824031 --- --- --- --- 1.37549006938934 8.0947732925415 13.8594121932983 8.4564962387085 0.665526986122131 0.466064006090164 0.334473013877869 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC57A7.09 /DEF=zinc finger protein --- --- --- --- --- --- SPAC57A7.09 // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.89515495456191 5.88501034844637 1.40929424904409 10.0759812824031 6.14798785313136 Max fold change at or above threshold 3 10.0759812824031 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776962_at SPBC660.10.S1 --- 10.0714621789173 --- --- --- --- 4.52234315872192 5.4153037071228 4.18573045730591 0.449025481939316 0.753906011581421 0.466064006090164 0.5 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC660.10 /DEF=involved in translational elongation (factor g) --- --- --- --- --- --- SPBC660.10 // |||translational elongation |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -9.77431934685795 1.19745528303811 -2.86901580689586 -1.08041910601971 -10.0714621789173 Max fold change at or above threshold 3 10.0714621789173 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779502_at SPCC970.06.S1 --- 10.0698608869224 --- --- --- --- 0.866804003715515 8.72859573364258 3.05499815940857 6.1289324760437 0.780517995357513 0.129638999700546 0.5 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC970.06 /DEF=surfeit locus (SURF40 family) --- --- --- --- --- --- SPCC970.06 // |||surfeit locus |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.32536435474419 10.0698608869224 4.55358073868435 3.52443937304565 7.07072469643924 Max fold change at or above threshold 3 10.0698608869224 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778640_at SPBC13G1.14c.S1 --- 10.0691545151241 --- --- --- --- 3.57608437538147 1.7835431098938 0.678434729576111 0.355152398347855 0.533936023712158 0.969726979732513 0.989257991313934 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13G1.14c /DEF=RNA-binding protein --- --- --- --- --- --- SPBC13G1.14c // |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.68158987648465 -2.00504510126162 -6.15429007586293 -5.27108094483286 -10.0691545151241 Max fold change at or above threshold 1 10.0691545151241 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772319_at SPAC869.04.S1 --- 10.0615176493829 --- --- --- --- 0.393592685461044 3.96013975143433 0.300714075565338 0.414912968873978 0.780517995357513 0.533936023712158 0.904784977436066 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC869.04 /DEF=formamidase-like protein --- --- --- --- --- --- SPAC869.04 // |||formamidase-like protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.471516559791 10.0615176493829 2.21887077840857 -1.30886020124298 1.05416839336828 Max fold change at or above threshold 1 10.0615176493829 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769835_at SPBC16E9.17c.S1 --- 10.0513895862721 --- --- --- --- 0.262757807970047 0.969600200653076 1.29462099075317 1.10512816905975 0.976073980331421 0.870360970497131 0.601073980331421 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16E9.17c /GEN=rem1 /DEF=cyclin --- --- --- --- --- --- SPBC16E9.17c // |rem1||cyclin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 10.0513895862721 3.69009091735004 4.16039399824583 4.92705050614806 4.20588136884493 Max fold change at or above threshold 0 10.0513895862721 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773877_at SPBC16E9.13.S1 --- 10.0453764178792 --- --- --- --- 2.30722761154175 6.01658535003662 4.10217761993408 0.321446597576141 0.423828125 0.533936023712158 0.303710997104645 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16E9.13 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPBC16E9.13 // |ksp1||serine/threonine protein kinase Ksp1 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.21775699080334 2.60771209565067 -10.0453764178792 1.77796832848793 -7.17763892646346 Max fold change at or above threshold 2 10.0453764178792 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776758_at SPAC13G7.13c.S1 --- 10.0375683967091 --- --- --- --- 1.05130136013031 10.5525093078613 1.41567313671112 7.31475305557251 0.753906011581421 0.325927734375 0.725830018520355 0.091064453125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G7.13c /DEF=involved in sporulation (predicted) --- --- --- --- --- --- SPAC13G7.13c // |msa1|SPAC6C3.01c|RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.64836037829879 10.0375683967091 7.63792898364942 1.34659117775292 6.95780803961467 Max fold change at or above threshold 2 10.0375683967091 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770085_at SPAC4F8.02c.S1 --- 10.0368064297143 --- --- --- --- 1.1868200302124 0.856163322925568 1.30649173259735 0.118246778845787 0.633789002895355 0.725830018520355 0.780517995357513 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F8.02c /GEN=mrpl40 /DEF=mitochondrial ribosomal protein YmL40 --- --- --- --- --- --- SPAC4F8.02c // |mrpl40|SPAC644.02|mitochondrial ribosomal protein subunit L40|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.96698315991293 -1.38620751255375 -8.57831291043129 1.10083390854427 -10.0368064297143 Max fold change at or above threshold 0 10.0368064297143 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778436_at SPAC3C7.12.S1 --- 10.0265862427955 --- --- --- --- 3.33583283424377 3.05119228363037 0.630193471908569 0.33269876241684 0.567627012729645 0.753906011581421 0.850341975688934 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3C7.12 /GEN=noc1 /DEF=microtubule-associated protein (PMID 11007487) --- --- --- --- --- --- U59915 // Schizosaccharomyces pombe Noc1p (noc1) mRNA, complete cds. // gb // 10 // --- /// SPAC3C7.12 // |tip1|noc1|CLIP170 family plus end tracking protein Tip1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.31838844692602 -1.09328830311367 -6.74866470080785 -5.2933471750208 -10.0265862427955 Max fold change at or above threshold 2 10.0265862427955 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775780_at SPCC576.01c.S1 --- 10.0108089947667 --- --- --- --- 5.12208080291748 1.40984582901001 3.61793732643127 0.511655032634735 0.194580003619194 0.696289002895355 0.274170011281967 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC576.01c /DEF=involved in sulfur metabolism (predicted) --- --- --- --- --- --- SPCC576.01c // ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.27393699944153 -3.63307866542698 -1.34558775863584 -1.4157461395192 -10.0108089947667 Max fold change at or above threshold 2 10.0108089947667 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775089_at YNL204C.S1 Protein of unknown function, contains a putative zinc-binding domain; expressed during sporulation 10.009671496454 31.2754497528076 312.765045166016 SPS18 30435 // sporulation // inferred from mutant phenotype --- --- 294.661193847656 33.1132507324219 29.4376487731934 330.868896484375 0.000244141003349796 0.002685546875 0.00805663969367743 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL204C /GEN=SPS18 /DB_XREF=GI:6324125 /SEG=NC_001146:-258374,259276 /DEF=sporulation-specific protein /NOTE=Sps18p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: sporulation [goid GO:0030435] [evidence IMP] [pmid 7969036] --- --- --- --- --- --- S0005148 // SPS18 SGDID:S0005148, Chr XIV from 259276-258374, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019877 // cdna:Genscan chromosome:SGD1:XIV:258374:259276:-1 // ensembl // 11 // --- /// YNL204C // cdna:known chromosome:SGD1:XIV:258374:259276:-1 gene:YNL204C // ensembl // 11 // --- YNL205C // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene -2.27089117843548 -8.89858855081079 -1.6905571062537 -10.009671496454 1.12287910112602 Max fold change at or above threshold 4 10.009671496454 Max fold change at or above threshold 0.751495544663573 -0.851167511643861 -0.87369015663041 0.973362123610698 172.020247459412 163.195839628228 0.948701342071576 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1774213_at SPAC144.03.S1 --- 10.0051487502948 --- --- --- --- 7.64884281158447 5.61097240447998 0.76449066400528 3.15181922912598 0.0805663987994194 0.24609400331974 0.432372987270355 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC144.03 /GEN=ade2 /DEF=adenylosuccinate synthetase (PMID 1448066) --- --- --- --- --- --- M98805 // Schizosaccharomyces pombe adenylsuccinate synthetase (ade2) mRNA, complete cds. // gb // 11 // --- /// AB000538 // Schizosaccharomyces pombe mRNA for adenylsuccinate synthetase, complete cds. // gb // 11 // --- /// SPAC144.03 // |ade2|min10, min3|adenylosuccinate synthetase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.37783319249189 -1.36319380317704 -1.41211896114337 -10.0051487502948 -2.42680250850096 Max fold change at or above threshold 3 10.0051487502948 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776024_at SPBC21D10.11c.S1 --- 9.97999602934368 --- --- --- --- 3.15804839134216 0.652633428573608 1.31633138656616 0.316437840461731 0.696289002895355 0.828612983226776 0.7470703125 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21D10.11c /DEF=aminotransferase class V --- --- --- --- --- --- SPBC21D10.11c // |||aminotransferase class V|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.70260966058214 -4.83893140172788 -5.97468751250993 -2.39912868717685 -9.97999602934368 Max fold change at or above threshold 1 9.97999602934368 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770291_at SPAC2C4.17c.S1 --- 9.97682811616477 --- --- --- --- 0.633620202541351 6.32151985168457 5.38642644882202 2.22559762001038 0.888427972793579 0.274170011281967 0.0952147990465164 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2C4.17c /DEF=MS ion channel --- --- --- --- --- --- SPAC2C4.17c // |||MS ion channel|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.98522207525354 9.97682811616477 5.42975055555383 8.5010333117819 3.51251050879352 Max fold change at or above threshold 2 9.97682811616477 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779863_at SPAC27D7.07c.S1 --- 9.97637204190234 --- --- --- --- 2.65642237663269 3.18518853187561 2.39639759063721 2.21317934989929 0.665526986122131 0.725830018520355 0.601073980331421 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27D7.07c /GEN=smd1 /DEF=small nuclear ribonucleoprotein (snRNP) --- --- --- --- --- --- SPAC27D7.07c // |smd1||small nuclear ribonucleoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.89879458243191 1.19905198807774 -9.97637204190234 -1.10850652955562 -1.20027433689618 Max fold change at or above threshold 2 9.97637204190234 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777666_at SPBC115.03.S1 --- 9.97434829831761 --- --- --- --- 4.45068216323853 9.02025032043457 3.05157971382141 0.446212828159332 0.171387001872063 0.0676269978284836 0.5 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC115.03 /DEF=oxidoreductase (predicted) --- --- --- --- --- --- SPBC115.03 // ||SPBC839.18c|oxidoreductase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.33696358121834 2.02671185890098 -1.21519686597595 -1.45848464750248 -9.97434829831761 Max fold change at or above threshold 3 9.97434829831761 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774233_at SPAC1250.04c.S1 --- 9.9720515249435 --- --- --- --- 0.343994081020355 3.43032670021057 2.68234157562256 0.500991106033325 0.904784977436066 0.753906011581421 0.688720703125 0.71875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1250.04c /DEF=DNA methyltransferase (predicted) --- --- --- --- --- --- SPAC1250.04c // |||DNA methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.22709765719226 9.9720515249435 -1.55509611967847 7.79763874909184 1.45639455349722 Max fold change at or above threshold 2 9.9720515249435 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769784_at SPAC664.10.S1 --- 9.97097604698385 --- --- --- --- 0.554173767566681 0.777440190315247 1.93287026882172 5.52565336227417 0.828612983226776 0.5 0.601073980331421 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC664.10 /DEF=kinesin-like protein --- --- --- --- --- --- SPAC664.10 // |klp2||kinesin-like protein Klp2|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.69406473336414 1.40288161550646 1.54861799842173 3.48784150738269 9.97097604698385 Max fold change at or above threshold 1 9.97097604698385 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774555_at SPAC1002.11.S1 --- 9.96587037957263 --- --- --- --- 6.94398021697998 4.29196310043335 4.94598007202148 3.65518736839294 0.149657994508743 0.129638999700546 0.0805663987994194 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1002.11 /DEF=GPI-anchor transamidase complex --- --- --- --- --- --- SPAC1002.11 // |gaa1||GPI-anchor transamidase complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -9.96587037957263 -1.61790305612806 -4.15535326688467 -1.40396445514628 -1.89976039997999 Max fold change at or above threshold 4 9.96587037957263 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778917_at SPAC19A8.15.S1 --- 9.95821127594424 --- --- --- --- 4.73658800125122 0.475646466016769 2.26464748382568 6.2072172164917 0.334473013877869 0.828612983226776 0.366210997104645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19A8.15 /GEN=trp2 /DEF=tryptophan synthase --- --- --- --- --- --- D89113 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0374. // gb // 9 // --- /// SPAC19A8.15 // |trp2||tryptophan synthase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.94520909428107 -9.95821127594424 1.06173348454121 -2.0915343492002 1.31048282325843 Max fold change at or above threshold 2 9.95821127594424 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779602_at SPBPB21E7.06.S1 --- 9.95248688334629 --- --- --- --- 3.3306725025177 0.766174912452698 8.5454683303833 3.05041241645813 0.334473013877869 0.805419981479645 0.171387001872063 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB21E7.06 /DEF=pseudogene --- --- --- --- --- --- SPBPB21E7.06 // ||SPAPB21E7.06|pseudogene|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -9.95248688334629 -4.3471437766808 -1.93581533707064 2.56568855806858 -1.09187612945301 Max fold change at or above threshold 3 9.95248688334629 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771635_at SPCC16A11.16c.S1 --- 9.95040588463164 --- --- --- --- 3.09115695953369 1.22945475578308 0.727542757987976 2.82753038406372 0.4912109375 0.805419981479645 0.919434010982513 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16A11.16c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC16A11.16c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.03592165047777 -2.51425027638762 -9.95040588463164 -4.24876328654869 -1.09323562956416 Max fold change at or above threshold 2 9.95040588463164 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777113_at SPBC29A10.04.S1 --- 9.94224330227329 --- --- --- --- 1.38360857963562 8.68469142913818 13.7561731338501 1.35368704795837 0.533936023712158 0.432372987270355 0.171387001872063 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A10.04 /GEN=psm1 /DEF=mitotic cohesin complex (subunit) (PMID 11069892) --- --- --- --- --- --- SPBC29A10.04 // |psm1|smc1|mitotic cohesin complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.83413382960484 6.27684126635391 3.83982596034136 9.94224330227329 -1.02210372901357 Max fold change at or above threshold 2 9.94224330227329 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769469_at SPAC23D3.04c.S1 --- 9.94113898823304 --- --- --- --- 0.893788993358612 8.88528060913086 2.15761232376099 3.12250280380249 0.870360970497131 0.366210997104645 0.77392578125 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23D3.04c /GEN=gpd2 /DEF=glycerol-3-phosphate dehydrogenase (NAD+) --- --- --- --- --- --- SPAC23D3.04c // |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.71011426187061 9.94113898823304 1.93733352690521 2.41400637039988 3.49355701066421 Max fold change at or above threshold 2 9.94113898823304 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769918_at SPAC21E11.07.S1 --- 9.94042805927754 --- --- --- --- 0.838175892829895 1.48293483257294 8.33182716369629 2.70310187339783 0.633789002895355 0.633789002895355 0.466064006090164 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC21E11.07 /DEF=CCR4-Not complex (predicted) --- --- --- --- --- --- SPAC21E11.07 // ||SPAC2C4.01|glycine cleavage T-protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.97684980605533 1.76924061555406 -2.1902731818025 9.94042805927754 3.22498164946199 Max fold change at or above threshold 2 9.94042805927754 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772187_at SPCC645.03c.S1 --- 9.92802502328043 --- --- --- --- 0.501432776451111 0.940110683441162 4.97823715209961 4.44775915145874 0.780517995357513 0.753906011581421 0.398925989866257 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC645.03c /GEN=isa1 /DEF=iron-sulfur protein (PMID 11941510) --- --- --- --- --- --- D89209 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1148. // gb // 11 // --- /// SPCC645.03c // |isa1||iron-sulfur protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 8.78484795390178 1.87484888820949 1.35663939740243 9.92802502328043 8.8701005605133 Max fold change at or above threshold 2 9.92802502328043 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776519_at SPAC1805.05.S1 --- 9.9270267000245 --- --- --- --- 0.672942519187927 6.6803183555603 1.30751216411591 0.628167688846588 0.55908203125 0.398925989866257 0.567627012729645 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1805.05 /GEN=cki3 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPAC1805.05 // |cki3||serine/threonine protein kinase Cki3|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.53940841278493 9.9270267000245 1.49367702789576 1.942977485943 -1.07127846773455 Max fold change at or above threshold 1 9.9270267000245 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775062_at SPBC660.09.S1 --- 9.92408143821514 --- --- --- --- 0.923649251461029 9.1663703918457 0.576949834823608 2.32089924812317 0.780517995357513 0.390625 0.870360970497131 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC660.09 /DEF=sequence orphan --- --- --- --- --- --- SPBC660.09 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -3.02725508948136 9.92408143821514 -1.74773503766939 -1.60091778472112 2.51274955774821 Max fold change at or above threshold 1 9.92408143821514 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779370_at SPAC11E3.01c.S1 --- 9.91315571575699 --- --- --- --- 0.288156807422638 0.59363716840744 2.85654330253601 0.495593160390854 0.991943001747131 0.969726979732513 0.805419981479645 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11E3.01c /DEF=SNF2 family --- --- --- --- --- --- SPAC11E3.01c // ||SPAC2H10.03c|SNF2 family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.30446735722165 2.0601184949164 7.0502609490308 9.91315571575699 1.71987316497427 Max fold change at or above threshold 1 9.91315571575699 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778676_at SPBC1683.06c.S1 --- 9.91226077195484 --- --- --- --- 7.88970232009888 2.33546328544617 0.795953869819641 0.798343539237976 0.0461426004767418 0.432372987270355 0.780517995357513 0.466064006090164 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1683.06c /DEF=inosine-uridine preferring nucleoside hydrolase (predicted) --- --- --- --- --- --- SPBC1683.06c // |||inosine-uridine preferring nucleoside hydrolase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.91898158949178 -3.37821723392737 -1.3587763321911 -9.91226077195484 -9.88259055447439 Max fold change at or above threshold 1 9.91226077195484 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1777908_at SPAC17H9.16.S1 --- 9.90280274404954 --- --- --- --- 0.642510831356049 0.533489882946014 0.968728840351105 0.341406404972076 0.919434010982513 0.904784977436066 0.780517995357513 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17H9.16 /GEN=tom22 /DEF=mitochondrial TOM complex component --- --- --- --- --- --- SPAC17H9.16 // |tom22||mitochondrial TOM complex component Tom22|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.58392785799059 -1.20435429404585 9.90280274404954 1.507723750441 -1.88195306824604 Max fold change at or above threshold 0 9.90280274404954 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770091_at SPBC1271.15c.S1 --- 9.89582020884949 --- --- --- --- 5.43233013153076 7.29708862304688 13.9622325897217 0.724946320056915 0.5 0.303710997104645 0.0461426004767418 0.665526986122131 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1271.15c /DEF=translation initiation factor if-2 (predicted) --- --- --- --- --- --- SPBC1271.15c // |||translation initiation factor if-2|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -9.89582020884949 1.3432704652268 -1.16244352659159 2.57021061895355 -7.4934239697972 Max fold change at or above threshold 3 9.89582020884949 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1772599_at SPBC12C2.11.S1 --- 9.88855483666132 --- --- --- --- 3.63487267494202 11.7607526779175 3.80211639404297 3.14030385017395 0.533936023712158 0.171387001872063 0.303710997104645 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12C2.11 /DEF=glucosamine--fructose-6-phosphate aminotransferase (predicted) --- --- --- --- --- --- SPBC12C2.11 // ||SPBC21D10.02|glutamine-fructose-6-phosphate transaminase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -9.88855483666132 3.23553360176642 1.6490334592022 1.04601088787893 -1.15749075515118 Max fold change at or above threshold 4 9.88855483666132 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775214_at SPBC215.02.S1 --- 9.88843062796645 --- --- --- --- 1.99994146823883 0.704499125480652 0.943211674690247 0.202250644564629 0.665526986122131 0.601073980331421 0.533936023712158 0.998046875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC215.02 /GEN=bob1 /DEF=prefoldin (subunit 5) --- --- --- --- --- --- SPBC215.02 // |bob1|gim5|prefoldin |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.29057432221384 -2.83881327301059 1.7784727352925 -2.12035274997589 -9.88843062796645 Max fold change at or above threshold 0 9.88843062796645 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775148_at SPAC17H9.07.S1 --- 9.88224480043656 --- --- --- --- 1.53395688533783 12.7408952713013 15.1589374542236 0.763852775096893 0.601073980331421 0.366210997104645 0.194580003619194 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17H9.07 /DEF=SRP receptor activity (predicted) --- --- --- --- --- --- SPAC17H9.07 // |||signal recognition particle subunit Srp21 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.23378962410954 8.30590181059443 3.02193722405363 9.88224480043656 -2.00818395291324 Max fold change at or above threshold 2 9.88224480043656 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772295_at SPAC7D4.11c.S1 --- 9.87844673689362 --- --- --- --- 1.56773161888123 0.264462232589722 0.185293450951576 0.808429658412933 0.753906011581421 0.805419981479645 0.753906011581421 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC7D4.11c /DEF=hypothetical protein --- --- --- --- --- --- SPAC7D4.11c // |sec39||secretory pathway protein Sec39 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.71320680284503 -5.92799812483378 -9.87844673689362 -8.46080425848904 -1.93923070803577 Max fold change at or above threshold 0 9.87844673689362 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779556_at SPCC18B5.08c.S1 --- 9.87386426951335 --- --- --- --- 0.463157564401627 1.35421419143677 1.62295866012573 4.57315492630005 0.888427972793579 0.696289002895355 0.533936023712158 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18B5.08c /DEF=isoleucine-tRNA ligase (predicted) --- --- --- --- --- --- SPCC18B5.08c // |||isoleucine-tRNA ligase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 5.19002181907471 2.92387363506917 5.2583886392301 3.5041177881279 9.87386426951335 Max fold change at or above threshold 1 9.87386426951335 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-Scv2-r2-Bs-thr-3_s_at AFFX-Scv2-r2-Bs-thr-3 --- 9.87128394228719 --- --- --- --- 0.621365964412689 0.909773170948029 6.13367986679077 4.68248510360718 0.753906011581421 0.601073980331421 0.274170011281967 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=thrB /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 1735-2143 of gb:X04603.1 /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase. --- --- --- --- --- --- AFFX-Scv2-r2-Bs-thr-3 // --- // affx // --- // --- --- AFFX_control No 6.62216441557437 1.4641503124619 1.94098298949111 9.87128394228719 7.53579270797851 Max fold change at or above threshold 2 9.87128394228719 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773933_at SPAC20G4.02c.S1 --- 9.86305507758604 --- --- --- --- 0.549978673458099 0.385275274515152 5.42446994781494 2.33625483512878 0.932372987270355 0.8447265625 0.0375977009534836 0.24609400331974 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20G4.02c /GEN=fus1 /DEF=formin --- --- --- --- --- --- SPAC20G4.02c // |fus1||formin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.28192226147491 -1.42749537755886 5.5050834437778 9.86305507758604 4.24790077847768 Max fold change at or above threshold 1 9.86305507758604 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1771936_at SPBC337.05c.S1 --- 9.86005826129505 --- --- --- --- 2.1712634563446 0.923111617565155 0.555173218250275 0.350297659635544 0.828612983226776 0.888427972793579 0.904784977436066 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC337.05c /GEN=cct8 /DEF=chaperonin-containing T-complex --- --- --- --- --- --- D89272 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1780. // gb // 10 // --- /// SPBC337.05c // |cct8||chaperonin-containing T-complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -9.86005826129505 -2.3521136718782 1.05000670367947 -3.91096577602882 -6.19833846050707 Max fold change at or above threshold 0 9.86005826129505 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769367_at SPAC13G7.06.S1 --- 9.85210553027376 --- --- --- --- 5.19404220581055 2.14564061164856 6.20700836181641 0.527201235294342 0.194580003619194 0.39013671875 0.111571997404099 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G7.06 /DEF=phosphoadenosine phosphosulfate reductase (predicted) --- --- --- --- --- --- SPAC13G7.06 // |||phosphoadenosine phosphosulfate reductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.82493764625018 -2.42074193488527 1.01217210137876 1.19502462934796 -9.85210553027376 Max fold change at or above threshold 2 9.85210553027376 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774781_at SPAC11D3.07c.S1 --- 9.85160684899219 --- --- --- --- 0.473137319087982 4.66116285324097 1.21883118152618 1.09650576114655 0.780517995357513 0.366210997104645 0.533936023712158 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11D3.07c /DEF=involved in transcriptional regulation --- --- --- --- --- --- SPAC11D3.07c // |||transcription factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 8.11832913051481 9.85160684899219 -1.55009571509221 2.57606223891956 2.3175211865768 Max fold change at or above threshold 1 9.85160684899219 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776785_at SPBC1685.07c.S1 --- 9.8500282494017 --- --- --- --- 9.30974674224854 0.94514924287796 10.8370418548584 7.98605394363403 0.0805663987994194 0.398925989866257 0.0561522990465164 0.129638999700546 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1685.07c /DEF=amino acid transporter (predicted) --- --- --- --- --- --- SPBC1685.07c // |||amino acid transporter |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.96841949382277 -9.8500282494017 -3.32516301409945 1.16405334698084 -1.16575054563332 Max fold change at or above threshold 3 9.8500282494017 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1773070_at SPAC664.08c.S1 --- 9.84637361767898 --- --- --- --- 4.60632658004761 4.19588804244995 6.33341073989868 0.467819601297379 0.24609400331974 0.171387001872063 0.24609400331974 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC664.08c /DEF=involved in intracellular protein transport --- --- --- --- --- --- SPAC664.08c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.05339918036614 -1.09781923002836 -2.46593793844388 1.37493741050232 -9.84637361767898 Max fold change at or above threshold 3 9.84637361767898 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774443_at SPCC737.08.S1 --- 9.8441500754744 --- --- --- --- 6.07907724380493 5.053138256073 1.01297557353973 0.617531955242157 0.567627012729645 0.334473013877869 0.5 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC737.08 /DEF=midasin (predicted) --- --- --- --- --- --- SPCC737.08 // |||midasin |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.18178060551296 -1.20303006483128 -1.08173592633767 -6.00120812643315 -9.8441500754744 Max fold change at or above threshold 2 9.8441500754744 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771181_at SPMIT.09.S1 --- 9.8440408706665 --- --- --- --- 0.0782712996006012 0.0940392389893532 0.93536376953125 0.0354067459702492 0.916259765625 0.828857421875 0.601073980331421 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPMIT.09 /GEN=atp8 /DEF=ATPase (subunit 8) --- --- --- --- --- --- SPMIT.09 // |atp8||F0-ATPase subunit 8|Schizosaccharomyces pombe|chr mitochondrial|||Manual // sanger // 11 // --- --- No No 9.8440408706665 1 1.88920721411705 9.3536376953125 1 Max fold change at or above threshold 0 9.8440408706665 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779041_at SPAC23G3.10c.S1 --- 9.84373468823801 --- --- --- --- 1.23205089569092 12.1279821395874 3.2036464214325 1.5439624786377 0.725830018520355 0.0461426004767418 0.432372987270355 0.5 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23G3.10c /DEF=transcription factor --- --- --- --- --- --- SPAC23G3.10c // |||transcription factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.72544777107189 9.84373468823801 5.52289575268655 2.60025493478979 1.25316452756756 Max fold change at or above threshold 2 9.84373468823801 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1780050_at SPAC16E8.09.S1 --- 9.83889220665494 --- --- --- --- 1.02302372455597 9.9996280670166 10.0654201507568 5.61443185806274 0.919434010982513 0.5 0.466064006090164 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16E8.09 /GEN=scd1 /DEF=guanyl-nucleotide exchange factor activity --- --- --- --- --- --- SPAC16E8.09 // |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.00292348695955 9.77458081077916 6.66919886340132 9.83889220665494 5.48807590996936 Max fold change at or above threshold 3 9.83889220665494 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776512_at SPAC1565.06c.S1 --- 9.83814335079071 --- --- --- --- 1.16247701644897 4.59092998504639 1.50571155548096 0.16411566734314 0.466064006090164 0.334473013877869 0.366210997104645 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1565.06c /GEN=spg1 /DEF=GTPase --- --- --- --- --- --- SPAC1565.06c // |spg1|sid3|GTPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -9.83814335079071 3.94926516402907 1.52332415600205 1.29526135499905 -7.0832787342504 Max fold change at or above threshold 1 9.83814335079071 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779053_at SPAC823.07.S1 --- 9.83592693781928 --- --- --- --- 0.710339546203613 6.98684787750244 4.84154653549194 0.80790901184082 0.943848013877869 0.5 0.601073980331421 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC823.07 /DEF=Per1 family --- --- --- --- --- --- SPAC823.07 // |||Per1 family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.09285175737237 9.83592693781928 1.01966164101256 6.81582006994744 1.13735609422095 Max fold change at or above threshold 2 9.83592693781928 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777182_at SPBC32H8.02c.S1 --- 9.83473078202267 --- --- --- --- 0.763450860977173 1.22067034244537 0.446686983108521 0.824427664279938 0.884033203125 0.904784977436066 0.850341975688934 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32H8.02c /DEF=Ulp1 protease family --- --- --- --- --- --- SPBC32H8.02c // |nep2||nedd8 protease Nep2|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.21686596016108 1.59888527846178 9.83473078202267 -1.7091406059435 1.07986997778052 Max fold change at or above threshold 0 9.83473078202267 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773909_at SPCC1235.14.S1 --- 9.8337581284139 --- --- --- --- 0.390855997800827 1.38578391075134 0.720103859901428 3.84358334541321 0.943848013877869 0.601073980331421 0.850341975688934 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1235.14 /GEN=ght5 /DEF=hexose transporter (PMID 10735857) --- --- --- --- --- --- D89179 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1009. // gb // 11 // --- /// AF051141 // Schizosaccharomyces pombe putative glucose transporter protein (ght5) mRNA, complete cds. // gb // 11 // --- /// SPCC1235.14 // |ght5||hexose transporter |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.97925222900185 3.54551015859686 1.05254750856484 1.84237638402156 9.8337581284139 Max fold change at or above threshold 1 9.8337581284139 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769488_at SPBC17G9.13c.S1 --- 9.82935760541539 --- --- --- --- 1.20175445079803 11.8124742507935 8.48670482635498 0.657715559005737 0.870360970497131 0.24609400331974 0.366210997104645 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17G9.13c /DEF=sequence orphan --- --- --- --- --- --- SPBC17G9.13c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.13312180176429 9.82935760541539 -1.17402768461065 7.06192918255415 -1.82716439400448 Max fold change at or above threshold 2 9.82935760541539 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778415_at SPCC18.09c.S1 --- 9.82191768308492 --- --- --- --- 0.867826044559479 5.99613952636719 8.52371597290039 1.42870032787323 0.696289002895355 0.398925989866257 0.219482004642487 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18.09c /DEF=hypothetical protein --- --- --- --- --- --- SPCC18.09c // |||hypothetical protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.02081280360769 6.90937955130272 9.80431622756093 9.82191768308492 1.64629805342897 Max fold change at or above threshold 2 9.82191768308492 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779758_at SPAC17G8.09.S1 --- 9.81600282204791 --- --- --- --- 0.620283305644989 5.87617588043213 6.08870267868042 1.57954525947571 0.884033203125 0.0561522990465164 0.018554700538516 0.5 A M P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G8.09 /GEN=shg1 /DEF=SET1 complex (TAP) (PMID 12488447) --- --- --- --- --- --- SPAC17G8.09 // |shg1||Csp1 family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 6.2291703161841 9.47337422586588 6.94459405530726 9.81600282204791 2.54649003947196 Max fold change at or above threshold 2 9.81600282204791 Max fold change at or above threshold AAMAPA No 4 0 AMPA 2 1 1 No No x = 1
1776713_at SPAC328.10c.S1 --- 9.81439870204633 --- --- --- --- 3.35030078887939 0.635504066944122 1.31006944179535 2.17387199401855 0.212890625 0.753906011581421 0.633789002895355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC328.10c /GEN=rps502 /DEF=40S ribosomal protein (S5) --- --- --- --- --- --- SPAC328.10c // |rps502|rps5-2|40S ribosomal protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.06158140587439 -5.27187938385605 -9.81439870204633 -2.55734595586633 -1.54116746436672 Max fold change at or above threshold 1 9.81439870204633 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773469_at YDL186W.S1 Hypothetical protein 9.81429394608465 19.218318939209 12.4736614227295 --- --- --- --- 8.1824951171875 19.9136600494385 18.5229778289795 16.7648277282715 0.194580003619194 0.0375977009534836 0.00122069998178631 0.00292969006113708 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL186W /GEN=PPH22 /DB_XREF=GI:6320014 /SEG=NC_001136:+125617,126450 /DEF=Hypothetical ORF /NOTE=Ydl186wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002345 // YDL186W SGDID:S0002345, Chr IV from 125617-126450, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023446 // cdna:GeneFinder chromosome:SGD1:IV:125803:126450:1 // ensembl // 11 // --- /// GENSCAN00000024964 // cdna:Genscan chromosome:SGD1:IV:125803:126450:1 // ensembl // 11 // --- /// YDL186W // cdna:known chromosome:SGD1:IV:125617:126450:1 gene:YDL186W // ensembl // 11 // --- --- No cerevisiae_gene 9.81429394608465 2.43369042868225 2.16918431397413 2.2637322190479 2.04886498411183 Max fold change at or above threshold 4 9.81429394608465 Max fold change at or above threshold -1.45446239695267 0.77200713482112 0.508068164555757 0.174387097575797 15.8459901809692 5.26895372464627 0.332510222742293 APPPPP Called_P_>2EXP 2 0 APPP 1 3 0 Yes Yes 2 < x = 3
1778575_at SPAC11H11.03c.S1 --- 9.81303018030411 --- --- --- --- 0.908647656440735 0.200616374611855 1.40876185894012 4.57016515731812 0.780517995357513 0.991455078125 0.633789002895355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11H11.03c /DEF=conserved protein --- --- --- --- --- --- SPAC11H11.03c // |||SMR domain protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 9.81303018030411 -4.52927961737298 5.10418432048431 1.55039398269995 5.02963401151544 Max fold change at or above threshold 1 9.81303018030411 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773448_at SPAC4G9.13c.S1 --- 9.79813254750631 --- --- --- --- 2.04583740234375 0.886202871799469 0.208798706531525 2.35281825065613 0.633789002895355 0.828612983226776 0.999267995357513 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G9.13c /GEN=vps26 /DEF=retromer complex (predicted) --- --- --- --- --- --- SPAC4G9.13c // |vps26|pep8|retromer complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.72609917570013 -2.3085429617144 -2.26147816862168 -9.79813254750631 1.15005144004147 Max fold change at or above threshold 0 9.79813254750631 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776833_at SPCC576.06c.S1 --- 9.79566971263843 --- --- --- --- 0.820683598518372 2.48032379150391 1.74506688117981 1.12082326412201 0.919434010982513 0.753906011581421 0.805419981479645 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC576.06c /DEF=tyrosine-tRNA ligase (predicted) --- --- --- --- --- --- SPCC576.06c // |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 9.79566971263843 3.02226557955073 3.95848087115306 2.12635769050372 1.36571909825601 Max fold change at or above threshold 0 9.79566971263843 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775456_at SPAC644.06c.S1 --- 9.79467825270892 --- --- --- --- 3.03825116157532 0.484758466482162 2.41660332679749 4.9341254234314 0.633789002895355 0.753906011581421 0.567627012729645 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC644.06c /GEN=cdr1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPAC644.06c // |cdr1|nim1|serine/threonine protein kinase Cdr1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -9.79467825270892 -6.26755667337502 -2.12513328621691 -1.25724032897101 1.62400182244087 Max fold change at or above threshold 2 9.79467825270892 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771256_at SPAC8C9.08.S1 --- 9.79307810642637 --- --- --- --- 1.00374662876129 9.82976913452148 7.04190683364868 4.82282066345215 0.533936023712158 0.06494140625 0.014160200022161 0.030273400247097 A M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8C9.08 /GEN=rps5 /DEF=40S ribosomal protein S5 --- --- --- --- --- --- SPAC8C9.08 // |rps5||40S ribosomal protein S5|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.84745447080577 9.79307810642637 6.43332707445347 7.01562190284912 4.80481879117633 Max fold change at or above threshold 3 9.79307810642637 Max fold change at or above threshold AAMAPP No 4 0 AMPP 1 2 1 No No 1 < x = 2
1776888_at SPAC22A12.01c.S1 --- 9.78112654900126 --- --- --- --- 1.23725712299347 12.1017684936523 2.56691026687622 0.578318357467651 0.943848013877869 0.111571997404099 0.828612983226776 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22A12.01c /GEN=pso2 /DEF=DNA binding (damaged DNA) (predicted) --- --- --- --- --- --- SPAC22A12.01c // |pso2|SPAC56F8.17c, snm1|DNA 5' exonuclease |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.21289379908111 9.78112654900126 1.0254056681535 2.07467810786632 -2.13940489181631 Max fold change at or above threshold 2 9.78112654900126 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773211_s_at SPCP20C8.01c.S1 --- 9.7732142978567 --- --- --- --- 2.82708239555359 0.465527355670929 0.289268434047699 0.581652879714966 0.665526986122131 0.601073980331421 0.805419981479645 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP20C8.01c /DEF=B13958 domain --- --- --- --- --- --- SPBC337.02c // |||pseudogene|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPCP20C8.01c // |||B13958 domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPCC569.01c // |||B13958 domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.7141459243537 -6.0728598676637 -2.05601322213397 -9.7732142978567 -4.86042877831015 Max fold change at or above threshold 1 9.7732142978567 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771086_at SPAC1F7.13c.S1 --- 9.77088199937095 --- --- --- --- 9.05458545684814 11.4857721328735 24.2969074249268 0.926690697669983 0.334473013877869 0.466064006090164 0.24609400331974 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F7.13c /GEN=rpl801 /DEF=60S ribosomal protein L2A --- --- --- --- --- --- SPAC1F7.13c // |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S ribosomal protein L2A|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.21991251493904 1.26850336634535 1.00784123644823 2.6833815353248 -9.77088199937095 Max fold change at or above threshold 3 9.77088199937095 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778619_at SPAC823.10c.S1 --- 9.76599503081114 --- --- --- --- 3.88500070571899 0.477782726287842 0.765975117683411 0.397808998823166 0.633789002895355 0.919434010982513 0.904784977436066 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC823.10c /DEF=mitochondrial carrier --- --- --- --- --- --- SPAC823.10c // |||mitochondrial carrier|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.92232656634438 -8.13131260710012 -8.51964873888486 -5.07196724283768 -9.76599503081114 Max fold change at or above threshold 1 9.76599503081114 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778179_at SPBPB2B2.03c.S1 --- 9.76310954780243 --- --- --- --- 6.4043550491333 18.4481716156006 16.7092590332031 0.655974924564362 0.274170011281967 0.111571997404099 0.219482004642487 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB2B2.03c /DEF=pseudo-very degraded permease --- --- --- --- --- --- SPBPB2B2.03c // |||pseudo-very degraded permease|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.5387483167554 2.88056665723072 -1.06473982106443 2.60904632941367 -9.76310954780243 Max fold change at or above threshold 3 9.76310954780243 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775205_at SPCC4F11.03c.S1 --- 9.75407746771664 --- --- --- --- 0.771862506866455 1.03416192531586 7.29360294342041 7.52880668640137 0.780517995357513 0.665526986122131 0.219482004642487 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4F11.03c /DEF=hypothetical protein --- --- --- --- --- --- D89233 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1434. // gb // 10 // --- /// SPCC4F11.03c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.56954938892812 1.33982660916419 8.48645312665062 9.4493551358394 9.75407746771664 Max fold change at or above threshold 2 9.75407746771664 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776599_at SPAC5D6.07c.S1 --- 9.74500534085933 --- --- --- --- 0.479466766119003 1.26158452033997 1.66984498500824 2.4556725025177 0.805419981479645 0.828612983226776 0.805419981479645 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5D6.07c /DEF=hypothetical protein --- --- --- --- --- --- D89191 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1061. // gb // 11 // --- /// SPAC5D6.07c // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 9.74500534085933 2.63122412122896 1.13364940280895 3.48271267792893 5.12167406803792 Max fold change at or above threshold 0 9.74500534085933 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775405_at SPBC23G7.07c.S1 --- 9.74387247951792 --- --- --- --- 5.16127157211304 0.529694080352783 2.93976640701294 2.06847906112671 0.24609400331974 0.904784977436066 0.26708984375 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23G7.07c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC23G7.07c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -9.26716490796755 -9.74387247951792 -1.57152588981141 -1.75567404260441 -2.49520126604602 Max fold change at or above threshold 2 9.74387247951792 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771074_at SPBC1347.05c.S1 --- 9.73758056264733 --- --- --- --- 7.58766746520996 9.32853889465332 8.87714862823486 1.23634469509125 0.014160200022161 0.018554700538516 0.0676269978284836 0.398925989866257 P P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1347.05c /DEF=DNAJ domain protein --- --- --- --- --- --- AB029547 // Schizosaccharomyces pombe spj1 mRNA for DnaJ homolog, complete cds. // gb // 11 // --- /// SPBC1347.05c // |||DNAJ domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -9.73758056264733 1.22943433372975 -1.80587408435187 1.16994434309849 -6.13717800168177 Max fold change at or above threshold 3 9.73758056264733 Max fold change at or above threshold PAPPAA No 4 0 PPAA 2 2 0 No No 1 < x = 2
1778657_at SPBC16H5.04.S1 --- 9.73357835402137 --- --- --- --- 11.7690448760986 1.20911800861359 2.34749889373779 2.12799453735352 0.111571997404099 0.725830018520355 0.466064006090164 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16H5.04 /DEF=involved in inorganic phosphate transport (regulation) (predicted) --- --- --- --- --- --- SPBC16H5.04 // |||mitochondrial membrane protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.51509230081314 -9.73357835402137 -4.5223898044898 -5.01344000949003 -5.53058039835724 Max fold change at or above threshold 1 9.73357835402137 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772623_at SPBC2G5.01.S1 --- 9.73179280100892 --- --- --- --- 6.37945985794067 0.655527710914612 3.9727737903595 2.79255652427673 0.466064006090164 0.943848013877869 0.432372987270355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G5.01 /DEF=hypothetical protein --- --- --- --- --- --- SPBC2G5.01 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.55395507889065 -9.73179280100892 -1.08606437206052 -1.60579489157458 -2.28445147035759 Max fold change at or above threshold 3 9.73179280100892 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778669_at SPBC1685.11.S1 --- 9.73115801742941 --- --- --- --- 4.82995462417603 2.04766845703125 3.192955493927 4.0939884185791 0.0952147990465164 0.213134765625 0.24609400331974 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1685.11 /DEF=involved in DNA repair (predicted) --- --- --- --- --- --- SPBC1685.11 // |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -9.73115801742941 -2.3587581317625 -2.96393599291639 -1.51269087006148 -1.17976753482179 Max fold change at or above threshold 3 9.73115801742941 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1773178_at SPAC20G8.06.S1 --- 9.72925900771606 --- --- --- --- 6.42268848419189 8.38391494750977 4.56923913955688 3.88945317268372 0.274170011281967 0.00805663969367743 0.24609400331974 0.0375977009534836 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20G8.06 /DEF=CCR4-Not complex (predicted) --- --- --- --- --- --- SPAC20G8.06 // |||CCR4-Not complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -9.72925900771606 1.30535911373329 -8.06920800998665 -1.40563631887622 -1.65130885989309 Max fold change at or above threshold 4 9.72925900771606 Max fold change at or above threshold AAPAAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1773836_at YBR233W.S1 RNA binding protein with similarity to mammalian heterogeneous nuclear RNP K protein, involved in the regulation of telomere position effect and telomere length 9.72924552025794 40.5574855804443 376.34147644043 PBP2 --- 5737 // cytoplasm // inferred from direct assay --- 380.626037597656 39.1218452453613 41.9931259155273 372.056915283203 0.000244141003349796 0.0239257998764515 0.0239257998764515 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR233W /GEN=PBP2 /DB_XREF=GI:6319709 /SEG=NC_001134:+683385,684626 /DEF=RNA binding protein with similarity to mammalian heterogeneous nuclear RNP K protein, involved in the regulation of telomere position effect and telomere length /NOTE=Pbp2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000437 // PBP2 SGDID:S0000437, Chr II from 683423-684664, Verified ORF // sgd // 11 // --- /// GENSCAN00000021324 // cdna:Genscan chromosome:SGD1:II:683423:684664:1 // ensembl // 11 // --- /// GENEFINDER00000022253 // cdna:GeneFinder chromosome:SGD1:II:683423:684664:1 // ensembl // 11 // --- /// YBR233W // cdna:known chromosome:SGD1:II:683423:684664:1 gene:YBR233W // ensembl // 11 // --- --- No cerevisiae_gene -2.31896912922782 -9.72924552025794 -1.46609751599208 -9.06400819894468 -1.02303175122529 Max fold change at or above threshold 4 9.72924552025794 Max fold change at or above threshold 0.887965361739312 -0.873272635513719 -0.858464592946974 0.843771866721381 208.449481010437 193.900082149563 0.930201798582817 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1774428_at SPAP27G11.07c.S1 --- 9.7241859881366 --- --- --- --- 0.239118963479996 0.716642558574677 0.592304646968842 0.344533175230026 0.904784977436066 0.725830018520355 0.919434010982513 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP27G11.07c /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPAP27G11.07c // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.81854828708814 2.99701265071195 9.7241859881366 2.47702916719273 1.44084421501287 Max fold change at or above threshold 0 9.7241859881366 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778365_at SPBC365.04c.S1 --- 9.71724212169647 --- --- --- --- 0.971724212169647 0.654950678348541 0.982485592365265 0.186780631542206 0.870360970497131 0.753906011581421 0.805419981479645 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC365.04c /DEF=RNA-binding protein --- --- --- --- --- --- SPBC365.04c // |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.8008156115093 -1.48366013547745 -9.71724212169647 1.01107452100179 -5.20248916681745 Max fold change at or above threshold 0 9.71724212169647 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774793_at SPBC19F8.01c.S1 --- 9.71639971488692 --- --- --- --- 1.50871646404266 1.99352073669434 14.6592922210693 2.33946180343628 0.665526986122131 0.601073980331421 0.0676269978284836 0.525390625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19F8.01c /GEN=spn7 /DEF=septin --- --- --- --- --- --- SPBC19F8.01c // |spn7|SPBC21.08c|septin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- AF417166 // gb // 7 // Cross Hyb Matching Probes No No 5.47741199432903 1.3213355751104 2.46494876632334 9.71639971488692 1.55063052547833 Max fold change at or above threshold 1 9.71639971488692 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774496_at YHR213W-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 9.70788785533951 7.90585565567017 3.15451154112816 --- --- --- --- 0.9942347407341 6.15979194641113 9.6519193649292 5.31478834152222 0.828612983226776 0.567627012729645 0.334473013877869 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR213W-A /GEN=FLO5 /DB_XREF=GI:33438810 /SEG=NC_001140:+540547,540780 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Yhr213w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028651 // span:15-37 // numtm:1 S0028651 // YHR213W-A SGDID:S0028651, Chr VIII from 540548-540781, Uncharacterized ORF // sgd // 10 // --- /// YHR213W-A // cdna:known chromosome:SGD1:VIII:540548:540781:1 gene:YHR213W-A // ensembl // 10 // --- --- No cerevisiae_gene 9.06319028618522 6.19551067171824 3.06275828451333 9.70788785533951 5.34560715269113 Max fold change at or above threshold 3 9.70788785533951 Max fold change at or above threshold -1.27438530394259 0.176889918983578 1.15801117967285 -0.060515794713836 5.53018359839916 3.55932294858715 0.643617501165328 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775811_at SPAC56F8.11.S1 --- 9.70435172050713 --- --- --- --- 0.423486560583115 2.46561431884766 4.1096625328064 1.01353454589844 0.888427972793579 0.358154296875 0.0561522990465164 0.633789002895355 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC56F8.11 /DEF=signal peptidase activity (predicted) --- --- --- --- --- --- SPAC56F8.11 // |||signal peptidase subunit |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.18222048915221 5.82217843100536 1.67102230698971 9.70435172050713 2.39330982429021 Max fold change at or above threshold 1 9.70435172050713 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1777953_at SPAC13G6.10c.S1 --- 9.69656257356988 --- --- --- --- 18.6529350280762 25.1463680267334 22.6667079925537 14.0447988510132 0.0805663987994194 0.0952147990465164 0.018554700538516 0.171387001872063 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G6.10c /DEF=serine-rich protein --- --- --- --- --- --- SPAC13G6.10c // |||serine-rich protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -9.69656257356988 1.34811856626764 -9.13043214409253 1.21518184448914 -1.32810268241973 Max fold change at or above threshold 4 9.69656257356988 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1780202_at SPAC22G7.05.S1 --- 9.69282832128733 --- --- --- --- 1.72185719013214 1.29541563987732 1.01137554645538 1.59738671779633 0.828612983226776 0.932372987270355 0.567627012729645 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22G7.05 /DEF=involved in ribosome biogenesis and assembly (predicted) --- --- --- --- --- --- SPAC22G7.05 // |||Krr family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.44128950563158 -1.32919283751677 -9.69282832128733 -1.70249043114283 -1.07792131419969 Max fold change at or above threshold 0 9.69282832128733 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780229_at SPAC4H3.07c.S1 --- 9.69036966017961 --- --- --- --- 4.08633041381836 5.85365009307861 10.0588855743408 4.9904842376709 0.466064006090164 0.274170011281967 0.149657994508743 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4H3.07c /DEF=rhodanese-like domain (predicted) --- --- --- --- --- --- SPAC4H3.07c // |||rhodanese-like domain |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -9.69036966017961 1.43249554007769 -6.56439246722962 2.4615937909293 1.22126302386 Max fold change at or above threshold 4 9.69036966017961 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773358_at SPAC31A2.13c.S1 --- 9.68875747887273 --- --- --- --- 3.55298829078674 0.464304149150848 0.366712480783463 2.56655097007751 0.274170011281967 0.960205078125 0.753906011581421 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31A2.13c /GEN=sft1 /DEF=SNARE-associated --- --- --- --- --- --- SPAC31A2.13c // |sft1||SNARE|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.38720183907022 -7.65228632413622 -1.22446678434513 -9.68875747887273 -1.38434355374576 Max fold change at or above threshold 2 9.68875747887273 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779792_at YIR013C.S1 Protein containing GATA family zinc finger motifs 9.68560053954653 46.6744441986084 15.2595834732056 GAT4 6350 // transcription // inferred from sequence similarity 5634 // nucleus // inferred from sequence similarity 3700 // transcription factor activity // inferred from sequence similarity 15.714207649231 38.9894142150879 54.3594741821289 14.8049592971802 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR013C /GEN=GAT4 /DB_XREF=GI:6322203 /SEG=NC_001141:-380016,380381 /DEF=Protein containing GATA family zinc finger motifs /NOTE=Gat4p; go_component: nucleus [goid GO:0005634] [evidence ISS] [pmid 10392447]; go_function: transcription factor activity [goid GO:0003700] [evidence ISS] [pmid 10392447]; go_process: transcription [goid GO:0006350] [evidence ISS] [pmid 10392447] --- --- --- --- --- --- S0001452 // GAT4 SGDID:S0001452, Chr IX from 380381-380016, reverse complement, Verified ORF // sgd // 11 // --- /// YIR013C // cdna:known chromosome:SGD1:IX:380016:380381:-1 gene:YIR013C // ensembl // 11 // --- --- No cerevisiae_gene 9.68560053954653 2.4811568667922 -1.50779926732714 3.45925645094738 -1.06141512001482 Max fold change at or above threshold 4 9.68560053954653 Max fold change at or above threshold -0.794594399863264 0.417926664558717 1.21862939597098 -0.841961660666431 30.967013835907 19.1957131705192 0.619876145379613 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769924_at SPAC23H3.03c.S1 --- 9.68553023907314 --- --- --- --- 2.30925250053406 0.872427999973297 0.238422930240631 3.86451578140259 0.398925989866257 0.601073980331421 0.919434010982513 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H3.03c /DEF=nitrogen permease regulator family --- --- --- --- --- --- SPAC23H3.03c // |||nitrogen permease regulator family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.94265963238409 -2.64692616537381 1.86684482609272 -9.68553023907314 1.67349208478018 Max fold change at or above threshold 1 9.68553023907314 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772964_at SPAC24C9.09.S1 --- 9.68096669376386 --- --- --- --- 2.84676623344421 4.8575644493103 0.294058054685593 0.409682124853134 0.601073980331421 0.24609400331974 0.884033203125 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24C9.09 /DEF=threonine-tRNA ligase (predicted) --- --- --- --- --- --- SPAC24C9.09 // |||threonine-tRNA ligase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.54916081942385 1.7063446911246 -1.22924530768805 -9.68096669376386 -6.94871965542735 Max fold change at or above threshold 2 9.68096669376386 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772747_at SPCC16C4.12.S1 --- 9.6805493108832 --- --- --- --- 0.538755416870117 5.2154483795166 0.320010215044022 2.11268377304077 0.870360970497131 0.303710997104645 0.828612983226776 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16C4.12 /DEF=N-acetyltransferase complex (predicted) --- --- --- --- --- --- SPCC16C4.12 // |||N-acetyltransferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 6.88146943139455 9.6805493108832 2.1340536194121 -1.68355693519347 3.92141537121676 Max fold change at or above threshold 1 9.6805493108832 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772773_at SPBC28E12.05.S1 --- 9.68049459911095 --- --- --- --- 1.14954018592834 0.818056166172028 7.90814256668091 0.486664563417435 0.753906011581421 0.850341975688934 0.334473013877869 0.822998046875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC28E12.05 /DEF=rrm RNA recognition motif (inferred from context) --- --- --- --- --- --- SPBC28E12.05 // |esf2|SPBC3H7.17c|U3 associated factor|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.23558375043892 -1.40520936515575 9.68049459911095 6.87939635646096 -2.36207908349869 Max fold change at or above threshold 1 9.68049459911095 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771093_at SPBC1773.14.S1 --- 9.67864920946102 --- --- --- --- 0.906304061412811 8.77179908752441 6.32919645309448 0.572569131851196 0.805419981479645 0.533936023712158 0.601073980331421 0.865478515625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1773.14 /GEN=arg7 /DEF=argininosuccinate lyase (PMID 1868575) --- --- --- --- --- --- SPBC1773.14 // |arg7||argininosuccinate lyase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.51361473511944 9.67864920946102 1.7429643256981 6.98352431878997 -1.58287272400208 Max fold change at or above threshold 2 9.67864920946102 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774497_at SPBC839.17c.S1 --- 9.66169357952374 --- --- --- --- 3.59465312957764 0.587893187999725 0.372052073478699 1.85284113883972 0.398925989866257 0.753906011581421 0.366210997104645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC839.17c /DEF=peptidyl-prolyl cis-trans isomerase --- --- --- --- --- --- SPBC839.17c // |fkh1||peptidyl-prolyl cis-trans isomerase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.05679532651839 -6.11446637408446 -5.32226078395415 -9.66169357952374 -1.94007627217769 Max fold change at or above threshold 1 9.66169357952374 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772595_at SPBC3B8.11.S1 --- 9.66040226179432 --- --- --- --- 0.389273226261139 1.15158438682556 1.37902760505676 0.628905713558197 0.904784977436066 0.805419981479645 0.466064006090164 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B8.11 /DEF=sequence orphan --- --- --- --- --- --- SPBC3B8.11 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 7.70562497999899 2.9582933249384 9.66040226179432 3.54256987643856 1.61558943983551 Max fold change at or above threshold 0 9.66040226179432 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779472_at SPBC649.02.S1 --- 9.64325548118063 --- --- --- --- 1.04886472225189 0.794979929924011 10.1144704818726 4.03267812728882 0.753906011581421 0.696289002895355 0.274170011281967 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC649.02 /GEN=rps1902 /DEF=40S ribosomal protein S19 --- --- --- --- --- --- SPBC649.02 // |rps1902|rps19-2, rps19|40S ribosomal protein S19|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.76724890507091 -1.31936000239924 -2.06986137821927 9.64325548118063 3.8448029013987 Max fold change at or above threshold 2 9.64325548118063 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770377_at SPBC3B9.18c.S1 --- 9.63973338809549 --- --- --- --- 4.22484016418457 0.438273549079895 3.35719227790833 0.746467351913452 0.633789002895355 0.99804699420929 0.780517995357513 0.84521484375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B9.18c /GEN=vma7 /DEF=vacuolar ATP synthase (subunit F) (predicted) --- --- --- --- --- --- SPBC3B9.18c // |vma7||vacuolar ATP synthase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.48463390418768 -9.63973338809549 -2.84518627985555 -1.25844450196842 -5.65977889502448 Max fold change at or above threshold 2 9.63973338809549 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776915_at SPAC1687.02.S1 --- 9.63944457459335 --- --- --- --- 1.40088760852814 13.5037784576416 8.61080551147461 7.46981143951416 0.932372987270355 0.5 0.466064006090164 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.02 /DEF=CAAX prenyl protease (predicted) --- --- --- --- --- --- SPAC1687.02 // |||CAAX prenyl protease |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.69630388366691 9.63944457459335 2.60475716412981 6.1466783338327 5.33219895303552 Max fold change at or above threshold 3 9.63944457459335 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770137_at YML083C.S1 Hypothetical protein 9.63358238135617 106.340259552002 105.042488098145 --- --- --- --- 93.3726806640625 105.263847351074 107.41667175293 116.712295532227 0.00195312988944352 0.00415039015933871 0.00415039015933871 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML083C /GEN=TUB1 /DB_XREF=GI:6323556 /SEG=NC_001145:-99794,101050 /DEF=Hypothetical ORF /NOTE=Yml083cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004548 // YML083C SGDID:S0004548, Chr XIII from 101050-99794, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018647 // cdna:Genscan chromosome:SGD1:XIII:99794:100801:-1 // ensembl // 11 // --- /// GENEFINDER00000022021 // cdna:GeneFinder chromosome:SGD1:XIII:99794:100876:-1 // ensembl // 11 // --- /// YML083C // cdna:known chromosome:SGD1:XIII:99794:101050:-1 gene:YML083C // ensembl // 11 // --- --- No cerevisiae_gene -9.63358238135617 1.12735166862986 1.45671919796995 1.15040792434133 1.24996192357522 Max fold change at or above threshold 4 9.63358238135617 Max fold change at or above threshold -1.28345173737772 -0.044542841408349 0.179754182855208 1.14824039593086 105.691373825073 9.59809613579992 0.0908124834452947 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773934_at SPCC188.11.S1 --- 9.62852121856898 --- --- --- --- 0.597793161869049 5.75586414337158 3.66692996025085 0.841574192047119 0.567627012729645 0.398925989866257 0.780517995357513 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC188.11 /GEN=prp45 /DEF=transcriptional regulator --- --- --- --- --- --- SPCC188.11 // |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.85925914108704 9.62852121856898 -1.31842775731203 6.13411158599724 1.40780163730189 Max fold change at or above threshold 2 9.62852121856898 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777698_at SPAC12B10.16c.S1 --- 9.6284367778615 --- --- --- --- 1.27600252628326 4.24331045150757 12.28590965271 6.49321365356445 0.466064006090164 0.601073980331421 0.0952147990465164 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12B10.16c /DEF=conserved protein --- --- --- --- --- --- SPAC12B10.16c // |||conserved protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.84817792792056 3.3254718263509 -1.04997911103756 9.6284367778615 5.08871535895612 Max fold change at or above threshold 3 9.6284367778615 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775513_at SPAC19A8.09.S1 --- 9.6223526411169 --- --- --- --- 0.665803611278534 5.0655460357666 6.40659713745117 4.00856494903564 0.865478515625 0.366210997104645 0.171387001872063 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19A8.09 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC19A8.09 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.74154015668828 7.60816845982451 2.85582674318245 9.6223526411169 6.02064164437025 Max fold change at or above threshold 3 9.6223526411169 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775328_at SPAC688.14.S1 --- 9.61900461847256 --- --- --- --- 0.24640217423439 1.7262225151062 0.526646375656128 1.78627800941467 0.919434010982513 0.805419981479645 0.780517995357513 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC688.14 /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPAC688.14 // |||histone lysine methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 9.61900461847256 7.00571137600487 7.50282762762182 2.13734467762916 7.24944093924867 Max fold change at or above threshold 0 9.61900461847256 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775865_at SPBC16D10.05.S1 --- 9.61370885771717 --- --- --- --- 6.95227289199829 7.44884252548218 0.723162412643433 4.80454874038696 0.366210997104645 0.466064006090164 0.5 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16D10.05 /GEN=mok13 /DEF=a-1,3-glucan synthase --- --- --- --- --- --- SPBC16D10.05 // |mok13||alpha-1,3-glucan synthase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.95211289499481 1.07142550949854 -2.83387348072613 -9.61370885771717 -1.44701891221492 Max fold change at or above threshold 3 9.61370885771717 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779021_at SPCPB16A4.02c.S1 --- 9.61217810674132 --- --- --- --- 4.68976497650146 4.92806625366211 0.487898260354996 1.87405729293823 0.274170011281967 0.0952147990465164 0.601073980331421 0.296142578125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCPB16A4.02c /DEF=hypothetical protein --- --- --- --- --- --- SPCPB16A4.02c // |||hypothetical protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.94744435735366 1.0508130531817 -6.16723872916688 -9.61217810674132 -2.50246617015035 Max fold change at or above threshold 2 9.61217810674132 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769318_at SPCC830.06.S1 --- 9.60847993880046 --- --- --- --- 3.10837912559509 0.384881436824799 0.444094151258469 0.817852735519409 0.5 0.850341975688934 0.696289002895355 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC830.06 /DEF=calcineurin (b subunit) (regulatory subunit) (predicted) --- --- --- --- --- --- SPCC830.06 // |||calcineurin |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -7.76476736644438 -8.07619913092887 -9.60847993880046 -6.99936965345435 -3.80065871347975 Max fold change at or above threshold 1 9.60847993880046 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778667_at SPBC1347.13c.S1 --- 9.6077811499695 --- --- --- --- 5.18840360641479 5.32777118682861 0.951248526573181 0.540021002292633 0.665526986122131 0.533936023712158 0.780517995357513 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1347.13c /DEF=ribose methyltransferase (predicted) --- --- --- --- --- --- SPBC1347.13c // |||ribose methyltransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.80641796484956 1.02686136063924 -1.33517334451452 -5.45430921728281 -9.6077811499695 Max fold change at or above threshold 2 9.6077811499695 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769660_at SPAC22G7.06c.S1 --- 9.6047447039779 --- --- --- --- 0.997028708457947 1.48277604579926 9.57620620727539 0.316163271665573 0.725830018520355 0.601073980331421 0.0561522990465164 0.780517995357513 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22G7.06c /GEN=ura1 /DEF=ATP binding --- --- --- --- --- --- X81841 // S.pombe mRNA for URA1. // gb // 11 // --- /// SPAC22G7.06c // |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.24823035497639 1.48719493553259 4.00278154970723 9.6047447039779 -3.15352476967208 Max fold change at or above threshold 1 9.6047447039779 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1771765_at SPAC12G12.13c.S1 --- 9.59824265099677 --- --- --- --- 1.02034282684326 4.30837202072144 9.79349803924561 0.745327055454254 0.601073980331421 0.390625 0.0676269978284836 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12G12.13c /GEN=cid14 /DEF=DNA polymerase sigma --- --- --- --- --- --- SPAC12G12.13c // |cid14||DNA polymerase sigma|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 7.9611386784085 4.22247494408392 2.5613071977284 9.59824265099677 -1.36898670104146 Max fold change at or above threshold 2 9.59824265099677 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778660_at SPBC119.04.S1 --- 9.58909442590854 --- --- --- --- 1.00827932357788 9.66848564147949 5.50283098220825 4.36804056167603 0.466064006090164 0.194580003619194 0.303710997104645 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC119.04 /GEN=mei3 /DEF=involved in meiosis (induction) (PMID 3034608) --- --- --- --- --- --- SPBC119.04 // |mei3||meiosis inducing protein Mei3 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.27270698008763 9.58909442590854 5.5066320172711 5.45764537021492 4.33217309879571 Max fold change at or above threshold 3 9.58909442590854 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780175_at SPCC4B3.18.S1 --- 9.58775355693276 --- --- --- --- 0.659262120723724 6.32084274291992 0.841530680656433 0.698931992053986 0.870360970497131 0.696289002895355 0.84521484375 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4B3.18 /DEF=flavoprotein (predicted) --- --- --- --- --- --- SPCC4B3.18 // |||phosphopantothenate-cysteine ligase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 5.59046806122245 9.58775355693276 -2.31501629635335 1.27647358190793 1.0601731391555 Max fold change at or above threshold 1 9.58775355693276 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770196_at SPAC1805.09c.S1 --- 9.5738822221756 --- --- --- --- 0.95738822221756 5.2559871673584 3.46787047386169 0.072541706264019 0.696289002895355 0.55908203125 0.567627012729645 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1805.09c /DEF=methionyl-tRNA formyltransferase (predicted) --- --- --- --- --- --- SPAC1805.09c // |||methionyl-tRNA formyltransferase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.98045766645381 5.48992252608265 3.86175462070864 3.62221969456571 -9.5738822221756 Max fold change at or above threshold 2 9.5738822221756 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779184_at SPAPB1A10.04c.S1 --- 9.56921987410939 --- --- --- --- 5.47188234329224 0.938763022422791 2.87809705734253 0.57182115316391 0.171387001872063 0.753906011581421 0.432372987270355 0.688720703125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1A10.04c /GEN=cwp1 /DEF=geranylgeranyltransferase (alpha subunit) (PMID 9781874) --- --- --- --- --- --- SPAPB1A10.04c // |cwp1||geranylgeranyltransferase I alpha subunit Cwp1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.03760645953956 -5.8288217714096 -6.70402974448756 -1.90121536357939 -9.56921987410939 Max fold change at or above threshold 2 9.56921987410939 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780164_at SPBC13G1.04c.S1 --- 9.56635232260228 --- --- --- --- 1.24014055728912 3.59500336647034 0.359456241130829 0.1296356767416 0.919434010982513 0.725830018520355 0.805419981479645 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13G1.04c /DEF=alkB homolog --- --- --- --- --- --- SPBC13G1.04c // |||alkB homolog|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.39327887688355 2.89886766894295 2.09524492473508 -3.45004597329486 -9.56635232260228 Max fold change at or above threshold 1 9.56635232260228 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772607_at SPAC4F10.10c.S1 --- 9.55854979552584 --- --- --- --- 1.16991448402405 1.42428719997406 11.1826858520508 0.837300479412079 0.870360970497131 0.943848013877869 0.828612983226776 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F10.10c /DEF=mannosyltransferase complex (predicted) --- --- --- --- --- --- SPAC4F10.10c // |||mannosyltransferase complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.99603729762445 1.21742846970752 -1.37770043676987 9.55854979552584 -1.39724568752847 Max fold change at or above threshold 1 9.55854979552584 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776476_at SPCC1393.09c.S1 --- 9.55633133264169 --- --- --- --- 2.96973085403442 1.30758607387543 2.82148551940918 0.467014849185944 0.665526986122131 0.870360970497131 0.725830018520355 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1393.09c /DEF=RWD domain --- --- --- --- --- --- SPCC1393.09c // |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.77421560805379 -2.27115515633531 -9.55633133264169 -1.05254158974252 -6.35896451517758 Max fold change at or above threshold 2 9.55633133264169 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777031_at SPBC428.10.S1 --- 9.55286148929609 --- --- --- --- 4.10010147094727 6.90562391281128 7.75305938720703 3.4966151714325 0.111571997404099 0.171387001872063 0.0561522990465164 0.030273400247097 A A M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC428.10 /DEF=sequence orphan --- --- --- --- --- --- SPBC428.10 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -9.55286148929609 1.68425683162808 1.47523857549704 1.89094329546332 -1.17259156925397 Max fold change at or above threshold 4 9.55286148929609 Max fold change at or above threshold AAAAMP No 4 0 AAMP 2 1 1 No No x = 1
1772216_at SPAC19B12.08.S1 --- 9.5505135011062 --- --- --- --- 2.30581021308899 1.62303125858307 5.93856000900269 0.2414331138134 0.533936023712158 0.696289002895355 0.334473013877869 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19B12.08 /DEF=peptidase family C54 --- --- --- --- --- --- SPAC19B12.08 // |||peptidase family C54|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.69003012944837 -1.42068133370518 -4.74464321512141 2.57547649641428 -9.5505135011062 Max fold change at or above threshold 1 9.5505135011062 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776640_at SPBC19G7.02.S1 --- 9.54575521121254 --- --- --- --- 6.21661281585693 3.33697962760925 2.3504102230072 0.651243686676025 0.23828125 0.398925989866257 0.5 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19G7.02 /DEF=aminotransferase class V (predicted) --- --- --- --- --- --- SPBC19G7.02 // |||aminotransferase class V |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.31086727686785 -1.86294598996721 -1.1715510717067 -2.64490545310136 -9.54575521121254 Max fold change at or above threshold 2 9.54575521121254 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777472_at YOL164W-A.S1 Identified by fungal homology and RT-PCR 9.5393062655291 0.372362494468689 2.14301612973213 --- --- --- --- 3.51131105422974 0.376636266708374 0.368088722229004 0.774721205234528 0.432372987270355 0.901123046875 0.904784977436066 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL164W-A /GEN=AAD15 /DB_XREF=GI:33438873 /SEG=NC_001147:+4130,4312 /DEF=Identified by fungal homology and RT-PCR /NOTE=Yol164w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028580 // YOL164W-A SGDID:S0028580, Chr XV from 4130-4312, Uncharacterized ORF // sgd // 11 // --- /// YOL164W-A // cdna:known chromosome:SGD1:XV:4130:4312:1 gene:YOL164W-A // ensembl // 11 // --- --- No cerevisiae_gene -7.60841980895396 -9.32281717030854 -5.57862981293937 -9.5393062655291 -4.53235438826897 Max fold change at or above threshold 1 9.5393062655291 Max fold change at or above threshold 1.48818353792356 -0.581805106721677 -0.587449494484749 -0.31892893671713 1.25768931210041 1.51434395334985 1.20406839652697 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771767_at SPCC1259.05c.S1 --- 9.53833950477529 --- --- --- --- 5.95895099639893 5.28118085861206 7.08980417251587 0.624736726284027 0.366210997104645 0.601073980331421 0.303710997104645 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1259.05c /GEN=cox9 /DEF=cytochrome c oxidase subunit VIIa --- --- --- --- --- --- SPCC1259.05c // |cox9||cytochrome c oxidase subunit VIIa|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.02627043058773 -1.128336854187 1.12754790696454 1.18977386738041 -9.53833950477529 Max fold change at or above threshold 3 9.53833950477529 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772265_at SPBC21D10.08c.S1 --- 9.52218973927032 --- --- --- --- 0.364299058914185 2.77836275100708 0.7132648229599 0.129815131425858 0.888427972793579 0.696289002895355 0.5 0.9677734375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21D10.08c /DEF=hypothetical protein --- --- --- --- --- --- SPBC21D10.08c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.6549013863356 7.62659876006312 9.52218973927032 1.95791014417064 -2.80629118433894 Max fold change at or above threshold 1 9.52218973927032 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770283_at SPAC23D3.05c.S1 --- 9.51369694739983 --- --- --- --- 7.81763648986816 4.67923259735107 2.54679012298584 1.17685616016388 0.00805663969367743 0.366210997104645 0.274170011281967 0.30322265625 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23D3.05c /DEF=alcohol dehydrogenase pseudogene --- --- --- --- --- --- SPAC23D3.05c // |||alcohol dehydrogenase pseudogene|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.93247044587469 -1.67070910180737 -9.51369694739983 -3.06960374131765 -6.6428139261977 Max fold change at or above threshold 3 9.51369694739983 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1774539_at SPBC31E1.01c.S1 --- 9.50734533321685 --- --- --- --- 0.535569489002228 2.12385129928589 5.09184408187866 0.505548775196075 0.850341975688934 0.870360970497131 0.432372987270355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31E1.01c /DEF=zinc finger protein (inferred from context) --- --- --- --- --- --- SPBC31E1.01c // ||SPBC660.18c|zinc finger protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.85598448143175 3.96559427469001 1.01549898084274 9.50734533321685 -1.05938242812379 Max fold change at or above threshold 1 9.50734533321685 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771113_at SPAC23H4.11c.S1 --- 9.50712380012593 --- --- --- --- 0.682799398899078 0.769764959812164 0.881706357002258 6.49145841598511 0.888427972793579 0.962401986122131 0.932372987270355 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H4.11c /DEF=sequence orphan --- --- --- --- --- --- SPAC23H4.11c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.28143273365578 1.1273661943073 3.8283636127465 1.29131097423913 9.50712380012593 Max fold change at or above threshold 1 9.50712380012593 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773847_at SPAC13A11.02c.S1 --- 9.50535145799468 --- --- --- --- 1.66925501823425 15.8668556213379 1.81186497211456 7.92515134811401 0.828612983226776 0.533936023712158 0.828612983226776 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13A11.02c /GEN=cyp51 /DEF=cytochrome p450 51 (predicted) --- --- --- --- --- --- SPAC13A11.02c // |erg11||cytochrome p450 family |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.92307626386462 9.50535145799468 6.42464103061075 1.08543329348871 4.74771755156817 Max fold change at or above threshold 2 9.50535145799468 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779220_at SPAC56F8.03.S1 --- 9.50250954356182 --- --- --- --- 1.27309417724609 0.583638548851013 0.730486929416656 0.133974522352219 0.5 0.753906011581421 0.432372987270355 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC56F8.03 /DEF=translation initiation factor if-2 (predicted) --- --- --- --- --- --- SPAC56F8.03 // |||translation initiation factor if-2 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.02326353086833 -2.18130584374933 3.03253826400666 -1.74280213098781 -9.50250954356182 Max fold change at or above threshold 0 9.50250954356182 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769629_at SPAP14E8.05c.S1 --- 9.50244028988448 --- --- --- --- 2.02822875976563 0.708723962306976 0.21344293653965 2.2170090675354 0.432372987270355 0.466064006090164 0.828612983226776 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP14E8.05c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAP14E8.05c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.51032334417621 -2.86180356194464 1.47567581927747 -9.50244028988448 1.09307643768526 Max fold change at or above threshold 0 9.50244028988448 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776588_at SPAC823.16c.S1 --- 9.50080376686119 --- --- --- --- 2.3789050579071 5.46762990951538 4.76319694519043 4.04422903060913 0.665526986122131 0.303710997104645 0.274170011281967 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC823.16c /DEF=WD repeat protein --- --- --- --- --- --- SPAC823.16c // |||phosphatidylinositol 3,5-bisphosphate binding protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.11746717805267 2.29838088381957 -9.50080376686119 2.00226441545379 1.70003801419765 Max fold change at or above threshold 3 9.50080376686119 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770328_at SPBC646.09c.S1 --- 9.49085256873715 --- --- --- --- 0.405363500118256 0.399885684251785 2.59369683265686 3.56974411010742 0.828612983226776 0.919434010982513 0.696289002895355 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC646.09c /GEN=yin6 /DEF=translation initiation factor --- --- --- --- --- --- AF117648 // Schizosaccharomyces pombe Int6 (int6) mRNA, complete cds. // gb // 9 // --- /// SPBC646.09c // |int6|yin6|eukaryotic translation initiation factor eIF3e|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.10737668748606 -1.01369845453888 9.49085256873715 6.39844690481557 8.80627907807691 Max fold change at or above threshold 2 9.49085256873715 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772511_at YMR096W.S1 Protein involved in vitamin B6 biosynthesis; member of a stationary phase-induced gene family; coregulated with SNO1; interacts with Sno1p and with Yhr198p, perhaps as a multiprotein complex containing other Snz and Sno proteins 9.48933656022961 489.419952392578 3761.81799316406 SNZ1 8614 // pyridoxine metabolism // inferred from sequence similarity /// 8614 // pyridoxine metabolism // inferred from direct assay /// 9228 // thiamin biosynthesis // inferred from mutant phenotype --- 5515 // protein binding // inferred from physical interaction 3913.2763671875 412.38671875 566.453186035156 3610.35961914063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR096W /GEN=SNZ1 /DB_XREF=GI:6323743 /SEG=NC_001145:+458407,459300 /DEF=Snooze: stationary phase-induced gene family; involved in cellular response to nutrient limitation and growth arrest /NOTE=Snz1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12271461]; go_process: pyridoxine metabolism [goid GO:0008614] [evidence ISS] [pmid 10438537]; go_process: pyridoxine metabolism [goid GO:0008614] [evidence IDA] [pmid 9791124]; go_process: thiamin biosynthesis [goid GO:0009228] [evidence IMP] [pmid 12271461] --- --- --- --- --- --- S0004702 // SNZ1 SGDID:S0004702, Chr XIII from 458407-459300, Verified ORF // sgd // 11 // --- /// GENSCAN00000018792 // cdna:Genscan chromosome:SGD1:XIII:458407:459300:1 // ensembl // 11 // --- /// GENEFINDER00000022063 // cdna:GeneFinder chromosome:SGD1:XIII:458407:459300:1 // ensembl // 11 // --- /// YMR096W // cdna:known chromosome:SGD1:XIII:458407:459300:1 gene:YMR096W // ensembl // 11 // --- --- No cerevisiae_gene -2.87951009751108 -9.48933656022961 1.03589206414961 -6.90838442374764 -1.08390209840619 Max fold change at or above threshold 4 9.48933656022961 Max fold change at or above threshold 0.943649997723756 -0.90436322847444 -0.823036223670482 0.783749454421166 2125.61897277832 1894.40724709512 0.891226165816073 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775103_at SPBC691.05c.S1 --- 9.48019500474714 --- --- --- --- 0.662261784076691 6.27837085723877 0.67211651802063 0.36968594789505 0.828612983226776 0.24609400331974 0.828612983226776 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC691.05c /GEN=pi030 /DEF=ion channel (predicted) --- --- --- --- --- --- SPBC691.05c // |pi030|SPBP22H7.01c|ion channel |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.56364794275608 9.48019500474714 4.24176095763182 1.01488042067485 -1.7914172498239 Max fold change at or above threshold 1 9.48019500474714 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Sp-URA4-5_at AFFX-r2-Sp-URA4-5 --- 9.47888309547847 --- --- --- --- 4.06352853775024 5.58866214752197 0.428692758083344 1.06442284584045 0.633789002895355 0.24609400331974 0.725830018520355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=URA4 orotidine 5-phosphate decarboxylase (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPCC330.05c // |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- AFFX_control No -1.98941030784974 1.37532248035253 -2.65131114775237 -9.47888309547847 -3.81758861492844 Max fold change at or above threshold 2 9.47888309547847 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776197_at SPCC18.13.S1 --- 9.47333417671661 --- --- --- --- 2.17256450653076 3.71529483795166 0.365716695785522 0.229334726929665 0.5 0.665526986122131 0.65771484375 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18.13 /DEF=WD repeat protein --- --- --- --- --- --- SPCC18.13 // |||WD repeat protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.84815510893751 1.71009644444776 1.16048512378084 -5.94056692398008 -9.47333417671661 Max fold change at or above threshold 1 9.47333417671661 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772909_at SPAC8E11.01c.S1 --- 9.4699488341949 --- --- --- --- 1.08375883102417 5.14552974700928 8.09130096435547 4.92246723175049 0.398925989866257 0.398925989866257 0.0561522990465164 0.0952147990465164 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8E11.01c /DEF=glycosyl hydrolase family 32 --- --- --- --- --- --- SPAC8E11.01c // ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.48987804507818 4.74785496524782 9.4699488341949 7.46596081409464 4.54203194551935 Max fold change at or above threshold 3 9.4699488341949 Max fold change at or above threshold AAAPMA No 4 0 AAMA 3 0 1 No No x = 1
1773770_at SPBC839.11c.S1 --- 9.4602942292684 --- --- --- --- 0.735021114349365 1.43233001232147 6.95351600646973 1.76442348957062 0.888427972793579 0.696289002895355 0.398925989866257 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC839.11c /GEN=hut1 /DEF=protein which maintains optimal environment for folding in secretory pathway proteins in the ER (PMID 11284010) --- --- --- --- --- --- SPBC839.11c // |hut1||uridine diphosphate-N-acetylglucosamine transporter Hut1 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.47148185391129 1.94869233598733 8.73627640450459 9.4602942292684 2.40050721690148 Max fold change at or above threshold 1 9.4602942292684 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778812_at SPCC1183.04c.S1 --- 9.45384118160726 --- --- --- --- 0.54128110408783 0.762572467327118 3.36503744125366 2.29045963287354 0.888427972793579 0.725830018520355 0.366210997104645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1183.04c /DEF=involved in RNA processing (predicted) --- --- --- --- --- --- SPCC1183.04c // |||mitochondrial membrane protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 9.45384118160726 1.4088289089866 -1.14833609820983 6.21680198300003 4.23155291321952 Max fold change at or above threshold 1 9.45384118160726 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772695_at SPAC16A10.04.S1 --- 9.45376054535702 --- --- --- --- 2.20304608345032 8.62271118164063 6.25904226303101 2.9366147518158 0.334473013877869 0.129638999700546 0.24609400331974 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16A10.04 /GEN=rho4 /DEF=GTPase --- --- --- --- --- --- SPAC16A10.04 // |rho4||GTPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 2.71877661252488 3.91399492113034 -9.45376054535702 2.84108549069857 1.3329792662424 Max fold change at or above threshold 3 9.45376054535702 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779967_at SPCC645.04.S1 --- 9.4516154118773 --- --- --- --- 1.96314966678619 9.42822647094727 6.47409200668335 5.15737438201904 0.601073980331421 0.129638999700546 0.303710997104645 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC645.04 /DEF=sequence orphan --- --- --- --- --- --- SPCC645.04 // |nse3||Smc5-Smc6 complex, Non-SMC Element 3 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -9.4516154118773 4.80260197704737 2.61071224215214 3.29780867766535 2.62709179502448 Max fold change at or above threshold 3 9.4516154118773 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775367_at SPAC23C11.15.S1 --- 9.448676189003 --- --- --- --- 1.10127198696136 10.4055624008179 1.48692190647125 3.97595000267029 0.828612983226776 0.559326171875 0.696289002895355 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C11.15 /GEN=pst2 /DEF=SIN3 family co-repressor --- --- --- --- --- --- SPAC23C11.15 // |pst2||SIN3 family co-repressor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.26844627473131 9.448676189003 1.41231269631254 1.35018589783072 3.6103251964492 Max fold change at or above threshold 2 9.448676189003 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773632_at SPBC146.11c.S1 --- 9.44829975249176 --- --- --- --- 0.58174604177475 0.345236569643021 5.49651098251343 1.22992622852325 0.780517995357513 0.919434010982513 0.567627012729645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC146.11c /DEF=sequence orphan --- --- --- --- --- --- SPBC146.11c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.14238041357816 -1.68506494655616 1.10841274952795 9.44829975249176 2.11419784614448 Max fold change at or above threshold 1 9.44829975249176 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772937_at SPCC1259.04.S1 --- 9.44737459396017 --- --- --- --- 5.36771774291992 4.33380126953125 2.87714505195618 2.24413347244263 0.303710997104645 0.334473013877869 0.533936023712158 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1259.04 /DEF=sequence orphan --- --- --- --- --- --- SPCC1259.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.81423328690171 -1.23857034715865 -9.44737459396017 -1.8656402948021 -2.39188881090813 Max fold change at or above threshold 3 9.44737459396017 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775795_at SPBC2F12.03c.S1 --- 9.44677426759091 --- --- --- --- 10.0087738037109 12.8857669830322 7.05623435974121 5.13115453720093 0.014160200022161 0.0676269978284836 0.0561522990465164 0.171387001872063 P A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2F12.03c /DEF=TPR repeat protein --- --- --- --- --- --- SPBC2F12.03c // |||TPR repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.80071788850952 1.28744711747353 -9.44677426759091 -1.41842990091361 -1.9505890401755 Max fold change at or above threshold 4 9.44677426759091 Max fold change at or above threshold PAAAMA No 4 0 PAMA 2 1 1 No No x = 1
1769546_at SPCC191.09c.S1 --- 9.44637974993821 --- --- --- --- 0.912359774112701 8.61849689483643 6.69928359985352 2.96755290031433 0.780517995357513 0.194580003619194 0.129638999700546 0.32666015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC191.09c /GEN=gst1 /DEF=glutathione S-transferase (PMID 12063243) --- --- --- --- --- --- SPCC191.09c // |gst1||glutathione S-transferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 7.25166348650151 9.44637974993821 -1.02537689165952 7.34280904303215 3.25261260361941 Max fold change at or above threshold 3 9.44637974993821 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779345_at SPAC32A11.04c.S1 --- 9.446231298802 --- --- --- --- 1.0755877494812 10.1602506637573 1.44642281532288 9.20650100708008 0.303710997104645 0.303710997104645 0.601073980331421 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC32A11.04c /GEN=tif212 /DEF=translation initiation factor --- --- --- --- --- --- SPAC32A11.04c // |tif212|tif22, SPAC6B12.17c|translation initiation factor eIF2 beta subunit|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.08639203146203 9.446231298802 5.92940149516485 1.34477434874146 8.5595071267042 Max fold change at or above threshold 2 9.446231298802 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778828_at SPBC119.10.S1 --- 9.43835017102057 --- --- --- --- 11.2072734832764 1.78086316585541 5.23462820053101 5.41218233108521 0.334473013877869 0.567627012729645 0.601073980331421 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC119.10 /DEF=asparagine synthetase --- --- --- --- --- --- SPBC119.10 // |||asparagine synthetase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- D89101 // gb // 8 // Cross Hyb Matching Probes No No -9.43835017102057 -6.29316934515468 -2.29852478272507 -2.1409874883071 -2.07074943113182 Max fold change at or above threshold 3 9.43835017102057 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777545_at SPAC6B12.15.S1 --- 9.43534564333321 --- --- --- --- 8.98323154449463 13.8795166015625 1.18194651603699 0.952082931995392 0.0375977009534836 0.303710997104645 0.533936023712158 0.366210997104645 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6B12.15 /GEN=cpc2 /DEF=WD repeat protein --- --- --- --- --- --- D89247 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1576. // gb // 10 // --- /// L37885 // Schizosaccharomyces pombe guanine nucleotide regulatory protein mRNA, complete cds. // gb // 11 // --- /// SPAC6B12.15 // |cpc2|rkp1|WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.31956755015129 1.54504718405801 -1.59483890301927 -7.60037059427612 -9.43534564333321 Max fold change at or above threshold 2 9.43534564333321 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1778317_at YGL256W.S1 Alcohol dehydrogenase type IV, dimeric enzyme demonstrated to be zinc-dependent despite sequence similarity to iron-activated alcohol dehydrogenases; transcription is induced in response to zinc deficiency; alcohol dehydrogenase isoenzyme IV 9.43423602843091 6310.14990234375 805.992340087891 ADH4 6113 // fermentation // inferred from direct assay 5739 // mitochondrion // inferred from direct assay 4024 // alcohol dehydrogenase activity, zinc-dependent // inferred from direct assay 750.972473144531 7084.8515625 5535.4482421875 861.01220703125 0.00122069998178631 0.000244141003349796 0.000244141003349796 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL256W /GEN=ADH4 /DB_XREF=GI:6321181 /SEG=NC_001139:+14910,16307 /DEF=Alcohol dehydrogenase type IV, dimeric enzyme demonstrated to be zinc-dependent despite sequence similarity to iron-activated alcohol dehydrogenases; transcription is induced in response to zinc deficiency /NOTE=Adh4p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: alcohol dehydrogenase activity, zinc-dependent [goid GO:0004024] [evidence IDA] [pmid 3282541]; go_process: fermentation [goid GO:0006113] [evidence IDA] [pmid 3282541] --- --- --- --- --- --- S0003225 // ADH4 SGDID:S0003225, Chr VII from 14910-16307, Verified ORF // sgd // 11 // --- /// GENSCAN00000019158 // cdna:Genscan chromosome:SGD1:VII:15030:16307:1 // ensembl // 11 // --- /// GENEFINDER00000021741 // cdna:GeneFinder chromosome:SGD1:VII:15159:16307:1 // ensembl // 11 // --- /// YGL256W // cdna:known chromosome:SGD1:VII:14910:16307:1 gene:YGL256W // ensembl // 11 // --- --- No cerevisiae_gene 1.43764128104404 9.43423602843091 1.49756309628799 7.37104013814119 1.14652965031588 Max fold change at or above threshold 4 9.43423602843091 Max fold change at or above threshold -0.86626016050993 1.08835127445529 0.610211195598171 -0.832302309543533 3558.07112121582 3240.47991127616 0.910740623467038 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774549_at SPBC23G7.08c.S1 --- 9.42749116643441 --- --- --- --- 8.79581356048584 0.963039815425873 1.4833927154541 0.932996213436127 0.398925989866257 0.888427972793579 0.725830018520355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23G7.08c /GEN=rga7 /DEF=GTPase activating protein --- --- --- --- --- --- SPBC23G7.08c // |rga7||GTPase activating protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.92479988346535 -9.13338516185458 -3.63656612210643 -5.92952457488187 -9.42749116643441 Max fold change at or above threshold 1 9.42749116643441 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769569_at SPCC548.04.S1 --- 9.42095448572949 --- --- --- --- 5.00141572952271 8.35526180267334 8.87515640258789 0.530882060527802 0.567627012729645 0.129638999700546 0.0676269978284836 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC548.04 /DEF=ubiquitin family protein --- --- --- --- --- --- SPCC548.04 // |||ubiquitin family protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.03969609788602 1.67057934283553 -1.67473743633051 1.77452882994689 -9.42095448572949 Max fold change at or above threshold 3 9.42095448572949 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774642_at SPAC3A12.10.S1 --- 9.41442964660919 --- --- --- --- 8.21749210357666 2.59463596343994 10.4158916473389 9.27639293670654 0.0952147990465164 0.559326171875 0.194580003619194 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A12.10 /GEN=rpl2001 /DEF=60S ribosomal protein L20a --- --- --- --- --- --- SPAC3A12.10 // |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal protein L20a|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.11936722180363 -3.16710791778358 -9.41442964660919 1.26752682157192 1.12885936728421 Max fold change at or above threshold 4 9.41442964660919 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774970_at SPBC19C7.10.S1 --- 9.41275447686652 --- --- --- --- 0.998500764369965 0.591367900371552 9.39864253997803 0.512826919555664 0.432372987270355 0.533936023712158 0.303710997104645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C7.10 /DEF=APSES domain --- --- --- --- --- --- SPBC19C7.10 // |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.0921260265079 -1.68845952535235 8.41509824789938 9.41275447686652 -1.94705216573871 Max fold change at or above threshold 1 9.41275447686652 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779471_at SPAPB2B4.05.S1 --- 9.40957376916219 --- --- --- --- 4.20435285568237 6.42862224578857 4.25475788116455 1.64778459072113 0.665526986122131 0.065185546875 0.219482004642487 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB2B4.05 /GEN=vma5 /DEF=vacuolar ATP synthase (subunit C) (predicted) --- --- --- --- --- --- SPAPB2B4.05 // |vma5||vacuolar ATP synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.16462043040132 1.5290396563885 -9.40957376916219 1.01198877145006 -2.55151849298603 Max fold change at or above threshold 3 9.40957376916219 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769658_at SPBPB21E7.07.S1 --- 9.4043289159909 --- --- --- --- 7.74634695053101 9.16132164001465 6.03894901275635 0.823700129985809 0.129638999700546 0.194580003619194 0.171387001872063 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB21E7.07 /GEN=aes1 /DEF=enhancer of RNA-mediated gene silencing (PMID 12034844) --- --- --- --- --- --- SPBPB21E7.07 // |aes1|SPAPB21E7.07|enhancer of RNA-mediated gene silencing |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.57345532956737 1.18266347976922 -1.10885046757295 -1.28273097424205 -9.4043289159909 Max fold change at or above threshold 3 9.4043289159909 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1775243_at SPBC31F10.05.S1 --- 9.39470374126475 --- --- --- --- 11.1955137252808 4.54624366760254 4.32406854629517 3.82013416290283 0.0461426004767418 0.0805663987994194 0.149657994508743 0.171387001872063 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31F10.05 /DEF=sequence orphan --- --- --- --- --- --- SPBC31F10.05 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -9.39470374126475 -2.46258549779509 -3.32160929604351 -2.58911569171886 -2.93065982708145 Max fold change at or above threshold 4 9.39470374126475 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1774683_at SPBP16F5.02.S1 --- 9.39282826757353 --- --- --- --- 2.74697303771973 2.27056097984314 1.32489490509033 0.292454302310944 0.633789002895355 0.696289002895355 0.696289002895355 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP16F5.02 /GEN=mcs2 /DEF=cyclin --- --- --- --- --- --- SPBP16F5.02 // |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.72653095549919 -1.20982130059748 -5.57624085157211 -2.0733516501314 -9.39282826757353 Max fold change at or above threshold 1 9.39282826757353 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770830_at SPCC290.02.S1 --- 9.38390718317542 --- --- --- --- 6.77474641799927 0.721953690052032 1.45607733726501 0.763290822505951 0.129638999700546 0.753906011581421 0.567627012729645 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC290.02 /GEN=rpc34 /DEF=localization DNA-directed RNA polymerase III complex (subunit) --- --- --- --- --- --- SPCC290.02 // |rpc34||DNA-directed RNA polymerase III complex subunit Rpc34|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.67457039591803 -9.38390718317542 -3.53987978258688 -4.65273804118429 -8.87570794544231 Max fold change at or above threshold 1 9.38390718317542 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778533_at SPAC9E9.03.S1 --- 9.37550028960406 --- --- --- --- 0.63102650642395 5.91618919372559 0.637467384338379 3.55087089538574 0.567627012729645 0.466064006090164 0.5 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9E9.03 /GEN=leu2 /DEF=3-isopropylmalate dehydratase (predicted) --- --- --- --- --- --- SPAC9E9.03 // |leu2||3-isopropylmalate dehydratase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.16503865808875 9.37550028960406 5.57690527547902 1.01020698472863 5.62713429505308 Max fold change at or above threshold 2 9.37550028960406 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773462_at SPAP27G11.03.S1 --- 9.37530730014536 --- --- --- --- 0.246889770030975 0.756419479846954 2.31466746330261 0.25194388628006 0.997070014476776 0.850341975688934 0.567627012729645 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP27G11.03 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAP27G11.03 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.11817710689444 3.06379433927964 1.4971663081951 9.37530730014536 1.02047114486943 Max fold change at or above threshold 0 9.37530730014536 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770919_at SPBP18G5.02.S1 --- 9.37412003274077 --- --- --- --- 4.01622009277344 11.6539497375488 6.50793981552124 2.69168829917908 0.274170011281967 0.171387001872063 0.194580003619194 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP18G5.02 /DEF=cardiolipin biosynthesis pathway (1st step) --- --- --- --- --- --- SPBP18G5.02 // |||cardiolipin biosynthesis pathway |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.55822512978248 2.90172088888213 -9.37412003274077 1.62041413697204 -1.49208216047836 Max fold change at or above threshold 4 9.37412003274077 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772123_at SPBC342.06c.S1 --- 9.36941037801182 --- --- --- --- 0.332437664270401 0.778960287570953 0.722126483917236 0.39662179350853 0.77392578125 0.567627012729645 0.5 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC342.06c /DEF=involved in DNA repair (predicted) --- --- --- --- --- --- SPBC342.06c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.13242918407182 2.34317699614613 9.36941037801182 2.17221621232986 1.19307117133973 Max fold change at or above threshold 0 9.36941037801182 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777849_at SPAC30C2.05.S1 --- 9.36700224387859 --- --- --- --- 0.73869663476944 4.44024515151978 6.91937303543091 0.247558668255806 0.850341975688934 0.432372987270355 0.014160200022161 0.696289002895355 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30C2.05 /GEN=erv14 /DEF=involved in intracellular protein transport --- --- --- --- --- --- SPAC30C2.05 // |erv14||cornichon family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.18557462584743 6.01091834255568 4.75954592463185 9.36700224387859 -2.98392554772566 Max fold change at or above threshold 2 9.36700224387859 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1775294_at SPBC2A9.06c.S1 --- 9.36527147795932 --- --- --- --- 7.98160266876221 12.9398002624512 2.74472427368164 0.852255344390869 0.334473013877869 0.194580003619194 0.466064006090164 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2A9.06c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC2A9.06c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -5.53711559556307 1.62120325947745 -7.83067061787583 -2.90797977242941 -9.36527147795932 Max fold change at or above threshold 3 9.36527147795932 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777468_at SPAC23H4.01c.S1 --- 9.34756857886452 --- --- --- --- 0.597607731819153 5.58617925643921 1.45696258544922 3.20126748085022 0.753906011581421 0.219482004642487 0.366210997104645 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H4.01c /DEF=involved in ergosterol biosynthesis (predicted) --- --- --- --- --- --- SPAC23H4.01c // ||SPAP27G11.01|ankyrin repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.23601707686885 9.34756857886452 3.1215717549451 2.43799152499942 5.35680398763479 Max fold change at or above threshold 2 9.34756857886452 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776190_at SPBC1198.02.S1 --- 9.34435689078001 --- --- --- --- 8.06502914428711 0.863090872764587 5.63010263442993 2.94795942306519 0.0952147990465164 0.5 0.194580003619194 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1198.02 /GEN=dea2 /DEF=adenine deaminase (PMID 14643670) --- --- --- --- --- --- SPBC1198.02 // |dea2||adenine deaminase Dea2|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.4909745994 -9.34435689078001 -1.2888006435472 -1.43248350304785 -2.73580059521354 Max fold change at or above threshold 3 9.34435689078001 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773017_at SPCC1223.07c.S1 --- 9.34180074733672 --- --- --- --- 0.870122849941254 8.12851428985596 1.45964860916138 2.03259539604187 0.567627012729645 0.24609400331974 0.633789002895355 0.424072265625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1223.07c /DEF=aspartate-tRNA ligase (predicted) --- --- --- --- --- --- SPCC1223.07c // |||aspartate-tRNA ligase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.77904978812855 9.34180074733672 -3.27361421117292 1.67752014472431 2.33598668990143 Max fold change at or above threshold 1 9.34180074733672 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776784_at SPAC4F10.06.S1 --- 9.33660988700539 --- --- --- --- 3.56741833686829 0.830441296100616 0.382089257240295 0.927499055862427 0.633789002895355 0.753906011581421 0.969726979732513 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F10.06 /DEF=hypothetical protein --- --- --- --- --- --- SPAC4F10.06 // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -4.79010780581108 -4.2958103765062 -2.84611676205659 -9.33660988700539 -3.84627705475253 Max fold change at or above threshold 1 9.33660988700539 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769633_at SPAC4G9.20c.S1 --- 9.33504960672493 --- --- --- --- 0.414133042097092 0.962585866451263 2.03349256515503 0.401513606309891 0.953857004642487 0.696289002895355 0.633789002895355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G9.20c /DEF=mitochondrial carrier family --- --- --- --- --- --- SPAC4G9.20c // |||mitochondrial carrier family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 9.33504960672493 2.32433968943147 -1.38269197091332 4.91023984673574 -1.03142965914201 Max fold change at or above threshold 0 9.33504960672493 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775385_at SPCC16C4.17.S1 --- 9.33483167082654 --- --- --- --- 5.78307104110718 12.2799415588379 3.97048377990723 4.86670207977295 0.0805663987994194 0.0239257998764515 0.0107421996071935 0.0375977009534836 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16C4.17 /DEF=sequence orphan --- --- --- --- --- --- SPCC16C4.17 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -9.33483167082654 2.12342913852341 -1.34348976279632 -1.45651546805772 -1.18829362190524 Max fold change at or above threshold 4 9.33483167082654 Max fold change at or above threshold AAPAPP No 4 0 APPP 1 3 0 No No 2 < x = 3
1772691_at SPBC15C4.03.S1 --- 9.33439359355137 --- --- --- --- 4.11510181427002 1.04613435268402 1.76033532619476 4.29633378982544 0.149657994508743 0.696289002895355 0.567627012729645 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC15C4.03 /DEF=RAB geranylgeranyl-transferase escort protein (predicted) --- --- --- --- --- --- SPBC15C4.03 // |||RAB geranylgeranyl-transferase escort protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -9.33439359355137 -3.93362650190397 1.51220638160351 -2.33768064131591 1.04404070269342 Max fold change at or above threshold 2 9.33439359355137 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775907_at SPBC8D2.07c.S1 --- 9.33126139036763 --- --- --- --- 0.35207599401474 0.36521714925766 2.37679672241211 0.197048157453537 0.932372987270355 0.901123046875 0.601073980331421 0.99804699420929 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8D2.07c /GEN=sfc9 /DEF=transcription factor --- --- --- --- --- --- SPBC8D2.07c // |sfc9||transcription factor TFIIIC complex subunit Sfc9 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 9.33126139036763 1.03732476927231 1.48343949529826 6.7508059703514 -1.78675100830495 Max fold change at or above threshold 0 9.33126139036763 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Sp-28SrRNA-M_at AFFX-r2-Sp-28SrRNA-M --- 9.32925439872555 --- --- --- --- 3.26156616210938 2.49895930290222 1.81650936603546 0.349606305360794 0.334473013877869 0.303710997104645 0.432372987270355 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=Z19578 gi|288694:4190-7673 S.pombe gene encoding 18S, 5.8S, and 28S ribosomal RNA (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPRRNA.22 // |||18S, 5.8S, and 28S rRNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPRRNA.23 // |||18S, 5.8S, and 28S rRNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- /// SPRRNA.08 // |||18S, 5.8S, and 28S ribosomal RNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- L19683 // gb // 2 // Cross Hyb Matching Probes /// L21925 // gb // 2 // Cross Hyb Matching Probes AFFX_control No 1.44792558479532 -1.30516977940436 -1.77772556647459 -1.79551298941428 -9.32925439872555 Max fold change at or above threshold 1 9.32925439872555 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773232_at SPAC18G6.05c.S1 --- 9.32192603698111 --- --- --- --- 0.743843019008636 0.56200784444809 3.06742429733276 0.743537247180939 0.633789002895355 0.753906011581421 0.366210997104645 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18G6.05c /DEF=HEAT repeat --- --- --- --- --- --- SPAC18G6.05c // |||HEAT repeat|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 9.32192603698111 -1.32354561659031 1.31439647777596 4.12375221511241 -1.00041123942191 Max fold change at or above threshold 1 9.32192603698111 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770111_at SPAC22F8.07c.S1 --- 9.31919022857167 --- --- --- --- 0.548214256763458 1.86849665641785 5.1089129447937 0.157570958137512 0.962401986122131 0.850341975688934 0.780517995357513 0.991943001747131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F8.07c /DEF=Myb family --- --- --- --- --- --- AJ627891 // Schizosaccharomyces pombe mRNA for replication termination factor 1 (rtf1 gene). // gb // 11 // --- /// SPAC22F8.07c // |rtf1||Myb family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.44121565618575 3.40833284316438 1.60255434379026 9.31919022857167 -3.47915798217735 Max fold change at or above threshold 1 9.31919022857167 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775728_at SPAC1486.06.S1 --- 9.31575930342885 --- --- --- --- 0.676074385643005 0.724225342273712 6.29814624786377 1.45863783359528 0.805419981479645 0.805419981479645 0.171387001872063 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1486.06 /DEF=nicotinate phosphoribosyltransferase (predicted) --- --- --- --- --- --- SPAC1486.06 // |||nicotinate phosphoribosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.05609467138444 1.07122138873064 1.18806811038624 9.31575930342885 2.1575108665121 Max fold change at or above threshold 1 9.31575930342885 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780090_at SPBP8B7.07c.S1 --- 9.31167514088692 --- --- --- --- 8.05916023254395 9.76175689697266 5.4680290222168 0.865489840507507 0.194580003619194 0.366210997104645 0.0805663987994194 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.07c /DEF=zinc finger protein --- --- --- --- --- --- SPBP8B7.07c // |set6||histone lysine methyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.92052450653088 1.21126229226135 -1.16785201550762 -1.47386932289483 -9.31167514088692 Max fold change at or above threshold 3 9.31167514088692 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777957_at SPBC16D10.03.S1 --- 9.30856422245469 --- --- --- --- 0.752035319805145 1.50857317447662 7.00036907196045 1.18737387657166 0.904784977436066 0.932372987270355 0.432372987270355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16D10.03 /GEN=pgp2 /DEF=peptidase family M22 --- --- --- --- --- --- SPBC16D10.03 // |pgp2||peptidase family M22|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.94092085960762 2.0059871321835 9.14585055043335 9.30856422245469 1.57888046651759 Max fold change at or above threshold 1 9.30856422245469 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773485_at SPBC887.04c.S1 --- 9.30411776171839 --- --- --- --- 0.71676778793335 6.66889190673828 4.21179962158203 0.536567032337189 0.725830018520355 0.334473013877869 0.466064006090164 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC887.04c /GEN=lub1 /DEF=WD repeat protein --- --- --- --- --- --- SPBC887.04c // |lub1||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.42205144990157 9.30411776171839 5.83774301127417 5.87610059001937 -1.33584015553702 Max fold change at or above threshold 2 9.30411776171839 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774586_s_at SPAC977.04.S1 --- 9.30227111155815 --- --- --- --- 1.22191655635834 11.3665990829468 6.37029027938843 3.11866068840027 0.725830018520355 0.149657994508743 0.303710997104645 0.357666015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC977.04 /DEF=pseudogene --- --- --- --- --- --- SPAC750.02c // |||membrane transporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- /// SPBPB2B2.16c // |||membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- /// SPAC977.04 // |||pseudogene|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- /// SPBC1348.05 // ||SPAC1348.05|membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 2.27831299336334 9.30227111155815 4.63747101392083 5.21335949352689 2.55226977011816 Max fold change at or above threshold 3 9.30227111155815 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777309_at YBR085W.S1 Mitochondrial inner membrane ADP/ATP translocator, exchanges cytosolic ADP for mitochondrially synthesized ATP; expressed under anaerobic conditions; similar to Pet9p and Aac1p; has roles in maintenance of viability and in respiration 9.29319614395924 80.3822822570801 36.3123931884766 AAC3 9061 // anaerobic respiration // inferred from genetic interaction /// 9061 // anaerobic respiration // inferred from expression pattern 5743 // mitochondrial inner membrane // inferred from sequence similarity 5471 // ATP:ADP antiporter activity // inferred from sequence similarity 36.9538955688477 64.5382614135742 96.2263031005859 35.6708908081055 0.0461426004767418 0.0461426004767418 0.030273400247097 0.030273400247097 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR085W /GEN=AAC3 /DB_XREF=GI:6319560 /SEG=NC_001134:+415940,416863 /DEF=Mitochondrial inner membrane ADP/ATP translocator, exchanges cytosolic ADP for mitochondrially synthesized ATP; expressed under anaerobic conditions; similar to Pet9p and Aac1p /NOTE=Aac3p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence ISS] [pmid 2165073]; go_function: ATP:ADP antiporter activity [goid GO:0005471] [evidence ISS] [pmid 2165073]; go_process: anaerobic respiration [goid GO:0009061] [evidence IGI] [pmid 1915842]; go_process: anaerobic respiration [goid GO:0009061] [evidence IEP] [pmid 2165073] --- --- --- --- --- S0000289 // span:12-34,115-137,178-200,215-237 // numtm:4 S0000289 // AAC3 SGDID:S0000289, Chr II from 415977-416900, Verified ORF // sgd // 11 // --- /// GENSCAN00000021208 // cdna:Genscan chromosome:SGD1:II:415977:416900:1 // ensembl // 11 // --- /// GENEFINDER00000022133 // cdna:GeneFinder chromosome:SGD1:II:415977:416900:1 // ensembl // 11 // --- /// YBR085W // cdna:known chromosome:SGD1:II:415977:416900:1 gene:YBR085W // ensembl // 11 // --- --- No cerevisiae_gene 9.29319614395924 1.74645353135598 -1.15159644941025 2.60395559437867 -1.03596783628545 Max fold change at or above threshold 4 9.29319614395924 Max fold change at or above threshold -0.749372825615101 0.216856639803838 1.3268303021227 -0.794314116311435 58.3473377227783 28.5484626912785 0.489284752406679 PPPPPP Called_P_>2EXP 4 0 PPPP 0 4 0 Yes Yes 3 < x
1771666_at SPCC584.04.S1 --- 9.29224798418326 --- --- --- --- 1.27753591537476 11.8711805343628 4.71310377120972 3.46872901916504 0.665526986122131 0.00805663969367743 0.171387001872063 0.149657994508743 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC584.04 /GEN=sup35 /DEF=translation release factor eRF3 (class II) (PMID 9701287) --- --- --- --- --- --- D89207 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1146. // gb // 11 // --- /// SPCC584.04 // |sup35|erf3|translation release factor eRF3 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.5021503724824 9.29224798418326 3.16089955646993 3.68921430269705 2.71517143073626 Max fold change at or above threshold 3 9.29224798418326 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1778193_at YMR117C.S1 Component of the evolutionarily conserved kinetochore-associated Ndc80 complex (Ndc80p-Nuf2p-Spc24p-Spc25p); involved in chromosome segregation, spindle checkpoint activity and kinetochore clustering 9.29069536859247 20.0017774105072 67.8763198852539 SPC24 7020 // microtubule nucleation // inferred from physical interaction /// 7059 // chromosome segregation // inferred from mutant phenotype /// 7059 // chromosome segregation // inferred from genetic interaction 778 // condensed nuclear chromosome kinetochore // inferred from mutant phenotype /// 778 // condensed nuclear chromosome kinetochore // inferred from physical interaction /// 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 780 // condensed nuclear chromosome, pericentric region // inferred from genetic interaction /// 780 // condensed nuclear chromosome, pericentric region // inferred from physical interaction /// 31262 // Ndc80 complex // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from physical interaction 68.8311462402344 32.5949440002441 7.40861082077026 66.9214935302734 0.000244141003349796 0.018554700538516 0.0676269978284836 0.000244141003349796 P P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR117C /GEN=SPC24 /DB_XREF=GI:6323764 /SEG=NC_001145:-501249,501890 /DEF=Spindle Pole Component of molecular weight 24kDa /NOTE=Spc24p; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IMP,IPI] [pmid 11179222]; go_component: condensed nuclear chromosome, pericentric region [goid GO:0000780] [evidence IGI,IPI] [pmid 11266451]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9585415]; go_process: chromosome segregation [goid GO:0007059] [evidence IGI,IMP] [pmid 11266451]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752] --- --- --- --- --- --- S0004723 // SPC24 SGDID:S0004723, Chr XIII from 501890-501249, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018812 // cdna:Genscan chromosome:SGD1:XIII:501249:501890:-1 // ensembl // 11 // --- /// YMR117C // cdna:known chromosome:SGD1:XIII:501249:501890:-1 gene:YMR117C // ensembl // 11 // --- --- No cerevisiae_gene 3.07872965103777 -2.11171236372484 1.1219756156064 -9.29069536859247 -1.02853571564563 Max fold change at or above threshold 4 9.29069536859247 Max fold change at or above threshold 0.84376422404037 -0.384529653233638 -1.23826754305008 0.779032972243344 43.9390486478806 29.5012479590067 0.671412988374515 PPPPAP Called_P_>2EXP 2 0 PPAP 1 3 0 Yes Yes 2 < x = 3
1770398_at SPBC32H8.03.S1 --- 9.28760795569895 --- --- --- --- 3.77938055992126 0.817536890506744 3.71626019477844 2.35347938537598 0.753906011581421 0.981445014476776 0.780517995357513 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32H8.03 /GEN=bem46 /DEF=esteraselipase (predicted) --- --- --- --- --- --- U29892 // Schizosaccharomyces pombe bem1/bud5 suppressor (Bem46+) mRNA, partial cds. // gb // 10 // --- /// SPBC32H8.03 // |bem46||esterase/lipase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -3.55969801604504 -4.62288687373929 -9.28760795569895 -1.01698491543501 -1.6058694133484 Max fold change at or above threshold 2 9.28760795569895 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776112_at SPBC1683.13c.S1 --- 9.27837724584136 --- --- --- --- 9.28589630126953 1.00081038475037 6.97794437408447 4.29153633117676 0.129638999700546 0.4912109375 0.0805663987994194 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1683.13c /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPBC1683.13c // |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -2.04048330505315 -9.27837724584136 -1.71882798035901 -1.33074954506038 -2.16376970499124 Max fold change at or above threshold 3 9.27837724584136 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773679_at SPBC1709.09.S1 --- 9.27362046867333 --- --- --- --- 0.645018219947815 5.98165416717529 0.251836359500885 0.193643882870674 0.725830018520355 0.111571997404099 0.828612983226776 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1709.09 /DEF=involved in mitochondrial protein synthesis --- --- --- --- --- --- SPBC1709.09 // |||mitochondrial translation termination factor|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 4.61197363423742 9.27362046867333 1.69790465559191 -2.56125930833093 -3.3309506625551 Max fold change at or above threshold 1 9.27362046867333 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779870_at SPAC16A10.03c.S1 --- 9.26831623776506 --- --- --- --- 6.06349229812622 2.5928738117218 1.96121954917908 0.65421724319458 0.111571997404099 0.39111328125 0.533936023712158 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16A10.03c /GEN=vps11 /DEF=involved in intracellular protein transport (predicted) --- --- --- --- --- --- SPAC16A10.03c // |vps11|pep5|HOPS complex asubunit Vps11 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.21231395922449 -2.33852194068008 -8.67923320977354 -3.09169480829633 -9.26831623776506 Max fold change at or above threshold 2 9.26831623776506 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775711_at SPCC1919.03c.S1 --- 9.25989381092918 --- --- --- --- 1.67579746246338 1.31566047668457 0.390323221683502 2.0918231010437 0.59326171875 0.5 0.919434010982513 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1919.03c /DEF=5-amp-activated protein kinase beta subunit (predicted) --- --- --- --- --- --- D89138 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0544. // gb // 11 // --- /// SPCC1919.03c // |||5'-amp-activated protein kinase beta subunit |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.16775727421052 -1.27373094514958 -9.25989381092918 -4.29335834858992 1.24825532195805 Max fold change at or above threshold 0 9.25989381092918 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769699_at SPBC106.06.S1 --- 9.25811592832287 --- --- --- --- 0.581095337867737 5.37984800338745 4.12250471115112 2.53652787208557 0.533936023712158 0.366210997104645 0.24609400331974 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC106.06 /GEN=cct4 /DEF=chaperonin-containing T-complex --- --- --- --- --- --- SPBC106.06 // |cct4||chaperonin-containing T-complex delta subunit Cct4|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- AF050465 // gb // 8 // Cross Hyb Matching Probes No No 8.96290450399737 9.25811592832287 5.54155239188763 7.09436893140149 4.36508040383368 Max fold change at or above threshold 3 9.25811592832287 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770177_at SPAC24H6.12c.S1 --- 9.25712831846408 --- --- --- --- 0.839624524116516 7.77251195907593 2.77140831947327 4.72056865692139 0.49169921875 0.194580003619194 0.171387001872063 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24H6.12c /GEN=uba3 /DEF=ubiquitin activating enzyme --- --- --- --- --- --- SPAC24H6.12c // |uba3||ubiquitin activating enzyme|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.91935065490075 9.25712831846408 -1.96157808133262 3.30077104690271 5.62223770427447 Max fold change at or above threshold 3 9.25712831846408 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770107_at SPAC6G10.10c.S1 --- 9.25286515600328 --- --- --- --- 1.39968633651733 12.9511089324951 11.8091707229614 0.452719628810883 0.5 0.194580003619194 0.0952147990465164 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G10.10c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC6G10.10c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.16414198623335 9.25286515600328 3.14435460106188 8.43701221828365 -3.09172884814772 Max fold change at or above threshold 2 9.25286515600328 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771224_at SPAPB2B4.07.S1 --- 9.25225450574002 --- --- --- --- 11.7157754898071 1.26626169681549 7.18739748001099 4.89966249465942 0.000732421991415322 0.366210997104645 0.0239257998764515 0.0952147990465164 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB2B4.07 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAPB2B4.07 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.57403164724744 -9.25225450574002 -2.28653470215294 -1.63004418809313 -2.39113928818101 Max fold change at or above threshold 3 9.25225450574002 Max fold change at or above threshold PAAAPA No 3 0 PAPA 2 2 0 No No 1 < x = 2
1775806_at SPCC594.05c.S1 --- 9.24465018325865 --- --- --- --- 2.20622730255127 10.1220588684082 20.3957996368408 6.0169825553894 0.601073980331421 0.567627012729645 0.334473013877869 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC594.05c /GEN=spp1 /DEF=SET1 complex (TAP) (PMID 12488447) --- --- --- --- --- --- SPCC594.05c // |||zinc finger protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.12824744304588 4.58794923655559 4.93257361360804 9.24465018325865 2.72727227535957 Max fold change at or above threshold 3 9.24465018325865 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773237_at SPBC1A4.08c.S1 --- 9.24358837640638 --- --- --- --- 2.21127676963806 1.92271530628204 8.81087303161621 0.532140851020813 0.5 0.725830018520355 0.334473013877869 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1A4.08c /GEN=cct3 /DEF=chaperonin-containing T-complex --- --- --- --- --- --- SPBC1A4.08c // |cct3||chaperonin-containing T-complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -9.24358837640638 -1.15008018213264 1.02959589173507 3.98451842509898 -4.1554350984258 Max fold change at or above threshold 1 9.24358837640638 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773263_at SPAC6F12.17.S1 --- 9.24159682344781 --- --- --- --- 7.3958158493042 18.3943252563477 3.60313034057617 0.800274670124054 0.5 0.601073980331421 0.601073980331421 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F12.17 /DEF=HAT repeat protein (SMART) --- --- --- --- --- --- SPAC6F12.17 // |||nuclear cleavage/polyadenylation factor I component|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.2731837770701 2.48712591432062 1.76809469927757 -2.05260846825806 -9.24159682344781 Max fold change at or above threshold 3 9.24159682344781 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776706_at SPBC1A4.04.S1 --- 9.2390373760833 --- --- --- --- 7.69861555099487 6.37132787704468 10.6949310302734 4.53469800949097 0.0561522990465164 0.5 0.129638999700546 0.334473013877869 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1A4.04 /DEF=hypothetical protein --- --- --- --- --- --- SPBC1A4.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -9.2390373760833 -1.20832198555223 -2.08111843780968 1.38920185836418 -1.69771295351574 Max fold change at or above threshold 4 9.2390373760833 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
RPTR-Sc-AJ132968-1_at AFFX-Sc-AJ132968-1 --- 9.23507841611609 --- --- --- --- 2.83758759498596 4.6000657081604 4.54256153106689 0.651648461818695 0.5 0.601073980331421 0.533936023712158 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL AJ132968 /FEA=CDS /FUNCTION=chloramphenicol resistence /DB_XREF=CAB42001.1 GI:4753685 /PROD=chloramphenicol acteyl transferase /GEN=cat --- --- --- --- --- --- AFFX-Sc-AJ132968-1 // --- // affx // --- // --- --- No No -9.23507841611609 1.62111848680504 1.38565550061945 1.60085332311631 -4.35447601160064 Max fold change at or above threshold 3 9.23507841611609 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773778_at YKL106C-A.S1 Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 9.23481398179217 21.3583598136902 152.482444763184 --- --- --- --- 145.890563964844 26.918830871582 15.7978887557983 159.074325561523 0.000732421991415322 0.0461426004767418 0.149657994508743 0.000244141003349796 P P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL106C-A /GEN=SLD2 /DB_XREF=GI:13129176 /SEG=NC_001143:-236793,236912 /DEF=Hypothetical ORF identified by homology. See FEBS Letters [2000] 487:31-36. /NOTE=Ykl106c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007616 // YKL106C-A SGDID:S0007616, Chr XI from 236912-236793, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YKL106C-A // cdna:known chromosome:SGD1:XI:236793:236912:-1 gene:YKL106C-A // ensembl // 11 // --- --- No cerevisiae_gene -2.46119051225957 -5.41964711100656 -1.32152627272325 -9.23481398179217 1.09036747297691 Max fold change at or above threshold 4 9.23481398179217 Max fold change at or above threshold 0.775603901783225 -0.789169498286393 -0.935437472653473 0.94900306915664 86.9204022884369 76.0312854806763 0.874723119991713 PPPPAP Called_P_>2EXP 2 0 PPAP 1 3 0 Yes Yes 2 < x = 3
1772161_at SPAC3G6.02.S1 --- 9.23420891837608 --- --- --- --- 0.616905450820923 5.69663381576538 5.49048471450806 2.39734840393066 0.805419981479645 0.601073980331421 0.00292969006113708 0.303710997104645 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G6.02 /GEN=dss1 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC3G6.02 // |dss1||mRNA export factor Dss1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.00191730283684 9.23420891837608 -5.22769109644026 8.90004247361052 3.88608724520182 Max fold change at or above threshold 2 9.23420891837608 Max fold change at or above threshold AAAAPA No 3 0 AAPA 3 1 0 No No x = 1
1772270_at SPCC736.09c.S1 --- 9.22461586474536 --- --- --- --- 0.326208889484406 2.45106053352356 3.00915169715881 0.548417866230011 0.888427972793579 0.805419981479645 0.665526986122131 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC736.09c /DEF=similar to translin-associated protein x --- --- --- --- --- --- SPCC736.09c // |||DNA repair protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.93760100948733 7.51377602675887 2.26977712088176 9.22461586474536 1.68118614761487 Max fold change at or above threshold 1 9.22461586474536 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779286_at SPAPB8E5.03.S1 --- 9.22458061403165 --- --- --- --- 10.1166334152222 7.13713264465332 9.42726802825928 3.4940173625946 0.334473013877869 0.194580003619194 0.466064006090164 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB8E5.03 /GEN=mae1 /DEF=malic acid transport protein (PMID 8750236) --- --- --- --- --- --- SPAPB8E5.03 // |mae1||malic acid transport protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -9.22458061403165 -1.41746467649034 -7.80488987463171 -1.07312461944398 -2.89541589676295 Max fold change at or above threshold 4 9.22458061403165 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772332_at SPAC10F6.03c.S1 --- 9.2174189140738 --- --- --- --- 9.23997402191162 1.22613143920898 9.14282131195068 2.19296598434448 0.35888671875 0.77392578125 0.334473013877869 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC10F6.03c /DEF=CTP synthase (predicted) --- --- --- --- --- --- SPAC10F6.03c // |||CTP synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.94129168589746 -7.53587562184411 -9.2174189140738 -1.0106261192958 -4.21345980187359 Max fold change at or above threshold 2 9.2174189140738 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774951_at SPBC106.11c.S1 --- 9.21700012421282 --- --- --- --- 13.3924226760864 10.1533288955688 7.44380187988281 8.28730964660645 0.0537109375 0.0561522990465164 0.030273400247097 0.0107421996071935 M M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC106.11c /DEF=phospholipase A2 (predicted) --- --- --- --- --- --- SPBC106.11c // |||1-alkyl-2-acetylglycerophosphocholine esterase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -9.21700012421282 -1.31901791164582 -2.20008377035205 -1.79913744242442 -1.61601572128664 Max fold change at or above threshold 4 9.21700012421282 Max fold change at or above threshold MAMAPP No 4 0 MMPP 0 2 2 No No 1 < x = 2
1780021_at SPAC23D3.02.S1 --- 9.21303958132311 --- --- --- --- 0.781853377819061 2.85916996002197 7.15497159957886 0.330177634954453 0.725830018520355 0.633789002895355 0.466064006090164 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23D3.02 /GEN=rfc2 /DEF=AAA family ATPase --- --- --- --- --- --- SPAC23D3.02 // |rfc2||DNA replication factor C complex subunit Rfc2|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 9.21303958132311 3.65691322840796 8.78255906330888 9.15129588560105 -2.36797800652645 Max fold change at or above threshold 2 9.21303958132311 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770175_at SPBP35G2.13c.S1 --- 9.21296987824683 --- --- --- --- 1.03941917419434 6.48588895797729 9.57613754272461 4.28966808319092 0.6572265625 0.358154296875 0.194580003619194 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP35G2.13c /DEF=chromatin remodeling complex (predicted) --- --- --- --- --- --- SPBP35G2.13c // |||chromatin remodeling complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.71416905983063 6.23991659861823 6.27659118642824 9.21296987824683 4.12698571441679 Max fold change at or above threshold 3 9.21296987824683 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770161_at SPCP1E11.05c.S1 --- 9.20864496328997 --- --- --- --- 0.473398715257645 4.35936069488525 0.472835183143616 4.10966205596924 0.753906011581421 0.432372987270355 0.850341975688934 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP1E11.05c /DEF=sterol O-acyltransferase (predicted) --- --- --- --- --- --- SPCP1E11.05c // |||sterol O-acyltransferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 6.22795489348977 9.20864496328997 1.87960710435405 -1.00119181510623 8.6811854859652 Max fold change at or above threshold 2 9.20864496328997 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775168_at SPAC56F8.12.S1 --- 9.20828015582757 --- --- --- --- 7.36633443832397 0.799968540668488 4.04928016662598 3.47020649909973 0.0561522990465164 0.725830018520355 0.24609400331974 0.274170011281967 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC56F8.12 /DEF=sequence orphan --- --- --- --- --- --- SPAC56F8.12 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.78280788147684 -9.20828015582757 -6.93831260334211 -1.8191713428567 -2.12273662683619 Max fold change at or above threshold 3 9.20828015582757 Max fold change at or above threshold MPAAAA No 4 0 MAAA 3 0 1 No No x = 1
1773724_at SPBC27.04.S1 --- 9.20220844770446 --- --- --- --- 0.332244724035263 3.05738520622253 0.234291195869446 2.66901969909668 0.976073980331421 0.696289002895355 0.932372987270355 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC27.04 /DEF=Mre11 complex (multisubunit endonuclease) (predicted) --- --- --- --- --- --- SPBC27.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -2.21637056663829 9.20220844770446 -1.77263426194983 -1.41808454561135 8.03329445440163 Max fold change at or above threshold 2 9.20220844770446 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775930_at SPBP18G5.03.S1 --- 9.19599947807658 --- --- --- --- 3.11699533462524 6.17698097229004 0.53544008731842 0.989981114864349 0.62548828125 0.303710997104645 0.780517995357513 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP18G5.03 /DEF=hypothetical protein --- --- --- --- --- --- SPBP18G5.03 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -9.19599947807658 1.98171004738854 -1.57608634654144 -5.82137088434247 -3.14854019720603 Max fold change at or above threshold 2 9.19599947807658 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776131_at SPBC29A3.10c.S1 --- 9.19557697881511 --- --- --- --- 1.49259126186371 13.7252378463745 3.08797788619995 1.2144228219986 0.696289002895355 0.129638999700546 0.398925989866257 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A3.10c /GEN=atp14 /DEF=F1-ATPase subunit H (predicted) --- --- --- --- --- --- SPBC29A3.10c // |atp14||F1-ATPase subunit H |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.51372256401481 9.19557697881511 -1.93739320906147 2.06887040350496 -1.22905402865151 Max fold change at or above threshold 2 9.19557697881511 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777459_at SPCC1223.01.S1 --- 9.19058493010961 --- --- --- --- 8.77837467193604 1.39422476291656 8.58934211730957 0.955148637294769 0.398925989866257 0.398925989866257 0.111571997404099 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1223.01 /DEF=zinc finger protein --- --- --- --- --- --- SPCC1223.01 // ||SPCC285.18|zinc finger protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.3925176475892 -6.29624068186297 -2.09415419805457 -1.02200780362975 -9.19058493010961 Max fold change at or above threshold 2 9.19058493010961 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774567_at SPAC11G7.04.S1 --- 9.18944293150854 --- --- --- --- 15.4519920349121 19.2501373291016 12.5913305282593 11.9780578613281 0.0805663987994194 0.030273400247097 0.0561522990465164 0.014160200022161 A P M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11G7.04 /GEN=ubi1 /DEF=ubiquitin family protein --- --- --- --- --- --- SPAC11G7.04 // |ubi1||ubiquitin family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -9.18944293150854 1.2458029544416 -1.9670836845241 -1.22719294837289 -1.29002482821525 Max fold change at or above threshold 4 9.18944293150854 Max fold change at or above threshold AAPAMP No 4 0 APMP 1 2 1 No No 1 < x = 2
1776286_at SPBC1711.08.S1 --- 9.18879334506766 --- --- --- --- 1.38230443000793 12.7017097473145 8.56030559539795 1.32874262332916 0.725830018520355 0.129638999700546 0.398925989866257 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1711.08 /DEF=chaperone activator activity (predicted) --- --- --- --- --- --- D89201 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1105. // gb // 11 // --- /// SPBC1711.08 // |||chaperone activator activity |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.9800541756751 9.18879334506766 3.02077044674666 6.19277881888059 -1.04031014414558 Max fold change at or above threshold 2 9.18879334506766 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772163_at SPAC23E2.03c.S1 --- 9.17849631480753 --- --- --- --- 0.722787857055664 3.11287117004395 1.30652129650116 4.98087310791016 0.850341975688934 0.657470703125 0.753906011581421 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23E2.03c /GEN=ste7 /DEF=involved in conjugation (required) --- --- --- --- --- --- SPAC23E2.03c // |ste7||meiotic suppressor protein Ste7|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.59001652190731 4.30675631813252 9.17849631480753 1.80761378839897 6.89119644068199 Max fold change at or above threshold 2 9.17849631480753 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779424_at SPAC18G6.07c.S1 --- 9.17504473625552 --- --- --- --- 3.33176875114441 2.49416637420654 1.46988224983215 2.54899597167969 0.696289002895355 0.888427972793579 0.919434010982513 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18G6.07c /GEN=mra1 /DEF=functions downstream of Ras1p --- --- --- --- --- --- SPAC18G6.07c // |mra1||nucleolar protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -9.17504473625552 -1.33582458074968 -3.58781578672723 -2.26669092134752 -1.30709063025663 Max fold change at or above threshold 2 9.17504473625552 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771456_at SPAC3A11.03.S1 --- 9.1699776086609 --- --- --- --- 1.09161281585693 6.19725751876831 10.0100650787354 8.70045280456543 0.55908203125 0.5 0.219482004642487 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A11.03 /DEF=methyltransferase (predicted) --- --- --- --- --- --- SPAC3A11.03 // |||methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.12538866420445 5.67715716483538 6.16806041031277 9.1699776086609 7.9702735971778 Max fold change at or above threshold 3 9.1699776086609 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771232_at SPBC26H8.03.S1 --- 9.16940377781512 --- --- --- --- 0.18646927177906 0.961530983448029 1.08243346214294 0.206351727247238 0.904784977436066 0.870360970497131 0.932372987270355 0.99804699420929 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC26H8.03 /GEN=cho2 /DEF=phosphatidylethanolamine N-methyltransferase (PMID 9755189) --- --- --- --- --- --- SPBC26H8.03 // |cho2||phosphatidylethanolamine N-methyltransferase Cho2|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 9.16940377781512 5.15651170980764 1.25032434345573 5.80488920139869 1.10662590827156 Max fold change at or above threshold 0 9.16940377781512 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777582_at SPAC56F8.06c.S1 --- 9.1656522350196 --- --- --- --- 5.41864395141602 1.47574758529663 13.1368722915649 0.591190218925476 0.274170011281967 0.696289002895355 0.0805663987994194 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC56F8.06c /DEF=dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity --- --- --- --- --- --- SPAC56F8.06c // |||dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.00934725925484 -3.671795912393 -5.24405120782511 2.42438374053567 -9.1656522350196 Max fold change at or above threshold 2 9.1656522350196 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778910_at SPAC3H1.13.S1 --- 9.16090712243577 --- --- --- --- 3.06993842124939 2.97983622550964 0.555180370807648 0.962123811244965 0.533936023712158 0.633789002895355 0.870360970497131 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H1.13 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPAC3H1.13 // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.67823863432157 -1.03023729793215 -9.16090712243577 -5.52962349296212 -3.19079351884761 Max fold change at or above threshold 2 9.16090712243577 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774520_at SPCC965.14c.S1 --- 9.15816368657229 --- --- --- --- 8.32341575622559 8.45986080169678 6.44096088409424 2.45715475082397 0.828612983226776 0.725830018520355 0.780517995357513 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC965.14c /DEF=cytidine and deoxycytidylate deaminase (predicted) --- --- --- --- --- --- SPCC965.14c // |||cytosine deaminase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.45503151230809 1.01639291481615 -9.15816368657229 -1.29226304987817 -3.38742024833171 Max fold change at or above threshold 3 9.15816368657229 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769337_at SPBC83.16c.S1 --- 9.13923839905322 --- --- --- --- 0.617261052131653 5.64129590988159 0.345747172832489 3.55883955955505 0.665526986122131 0.0805663987994194 0.753906011581421 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC83.16c /DEF=conserved protein --- --- --- --- --- --- SPBC83.16c // |||conserved protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 7.66641231944389 9.13923839905322 -1.36169822772773 -1.7852960215837 5.76553396211366 Max fold change at or above threshold 2 9.13923839905322 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772664_at SPCC126.04c.S1 --- 9.13376717922098 --- --- --- --- 0.75324535369873 1.59418833255768 6.87996768951416 0.286748439073563 0.665526986122131 0.432372987270355 0.111571997404099 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC126.04c /DEF=hypothetical protein --- --- --- --- --- --- SPCC126.04c // |||SAGA associated factor |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 1.88351332873322 2.1164263738629 1.74399241613755 9.13376717922098 -2.62685075508115 Max fold change at or above threshold 1 9.13376717922098 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772714_at SPAC11G7.01.S1 --- 9.13315442340327 --- --- --- --- 0.660911858081818 1.84331047534943 6.03621006011963 0.589612007141113 0.5 0.725830018520355 0.194580003619194 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11G7.01 /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPAC11G7.01 // |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.08137191215106 2.7890413113472 -1.11177742435068 9.13315442340327 -1.12092672821644 Max fold change at or above threshold 1 9.13315442340327 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775717_at YLR413W.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery 9.12870319609471 35.6319999694824 87.9672927856445 --- --- --- --- 83.9456787109375 41.8864669799805 29.3775329589844 91.9889068603516 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR413W /GEN=CTR3 /DB_XREF=GI:6323445 /SEG=NC_001144:+951152,953179 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery /NOTE=Ylr413wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004405 // span:5-27,531-553,566-588,612-634 // numtm:4 S0004405 // YLR413W SGDID:S0004405, Chr XII from 951152-953179, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018132 // cdna:Genscan chromosome:SGD1:XII:951152:953179:1 // ensembl // 11 // --- /// GENEFINDER00000024650 // cdna:GeneFinder chromosome:SGD1:XII:951152:953179:1 // ensembl // 11 // --- /// YLR413W // cdna:known chromosome:SGD1:XII:951152:953179:1 gene:YLR413W // ensembl // 11 // --- --- No cerevisiae_gene 9.12870319609471 -2.00412411844282 -1.11700940423914 -2.85747883691046 1.09581467769307 Max fold change at or above threshold 4 9.12870319609471 Max fold change at or above threshold 0.718566837538084 -0.646118010199335 -1.05199230068766 0.979543473348912 61.7996463775635 30.81972500881 0.498703905529129 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774384_at SPBC30D10.13c.S1 --- 9.12057415211653 --- --- --- --- 0.928772211074829 8.4709358215332 6.27101230621338 5.26374244689941 0.780517995357513 0.567627012729645 0.5 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30D10.13c /GEN=pdb1 /DEF=pyruvate dehydrogenase e1 component (beta subunit) --- --- --- --- --- --- SPBC30D10.13c // |pdb1||pyruvate dehydrogenase e1 component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.95194725883591 9.12057415211653 -1.15897056074832 6.75193791484803 5.66742026100017 Max fold change at or above threshold 3 9.12057415211653 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770251_at SPAC18B11.06.S1 --- 9.11464289999656 --- --- --- --- 4.28542613983154 9.98563575744629 7.45568656921387 2.07356095314026 0.366210997104645 0.0952147990465164 0.194580003619194 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18B11.06 /DEF=U3 snoRNP component (predicted) --- --- --- --- --- --- SPAC18B11.06 // |||small nucleolar ribonucleoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -9.11464289999656 2.3301383413503 1.3212222062736 1.73977717172998 -2.06669889946643 Max fold change at or above threshold 3 9.11464289999656 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771014_at SPBC25H2.03.S1 --- 9.10481860530464 --- --- --- --- 1.54505729675293 0.169696658849716 0.341697573661804 1.11705136299133 0.5 0.953857004642487 0.919434010982513 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25H2.03 /DEF=HEAT repeat --- --- --- --- --- --- SPBC25H2.03 // |||HEAT repeat|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.21228882606737 -9.10481860530464 -8.6848999210304 -4.52170988571945 -1.3831568967567 Max fold change at or above threshold 0 9.10481860530464 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772184_at SPAC4G8.03c.S1 --- 9.09939002383165 --- --- --- --- 9.69272422790527 1.22225570678711 6.99700355529785 2.27056431770325 0.219482004642487 0.850341975688934 0.398925989866257 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G8.03c /DEF=RNA-binding protein --- --- --- --- --- --- SPAC4G8.03c // |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.20884229761864 -7.93019347267694 -9.09939002383165 -1.38526787235464 -4.26886133651118 Max fold change at or above threshold 2 9.09939002383165 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776100_at SPBC11C11.08.S1 --- 9.09155614244915 --- --- --- --- 5.8502459526062 12.735481262207 0.643481254577637 6.56624937057495 0.334473013877869 0.0952147990465164 0.665526986122131 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11C11.08 /GEN=srp1 /DEF=SR family --- --- --- --- --- --- SPBC11C11.08 // |srp1||SR family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.34923446401478 2.17691381958626 1.16159128133799 -9.09155614244915 1.12238860105527 Max fold change at or above threshold 3 9.09155614244915 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775470_at SPAC5H10.10.S1 --- 9.08643665623995 --- --- --- --- 0.413571834564209 1.76125180721283 2.72143864631653 3.75789427757263 0.904784977436066 0.753906011581421 0.601073980331421 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5H10.10 /DEF=NADPH dehydrogenase (predicted) --- --- --- --- --- --- SPAC5H10.10 // |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.13009729362648 4.25863576775896 1.26261770413099 6.58032878178026 9.08643665623995 Max fold change at or above threshold 2 9.08643665623995 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776544_at YBL101W-C.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 9.08583268652738 7.50791525840759 2.86884832382202 --- --- --- --- 5.16880989074707 6.48059797286987 8.53523254394531 0.568886756896973 0.171387001872063 0.149657994508743 0.030273400247097 0.725830018520355 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL101W-C /GEN=ECM21 /DB_XREF=GI:33438761 /SEG=NC_001134:+28427,28546 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ybl101w-cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028598 // YBL101W-C SGDID:S0028598, Chr II from 28427-28546, Uncharacterized ORF // sgd // 11 // --- /// YBL101W-C // cdna:known chromosome:SGD1:II:28427:28546:1 gene:YBL101W-C // ensembl // 11 // --- --- No cerevisiae_gene -1.19973742483089 1.25378919129355 1.45988765454649 1.65129550599735 -9.08583268652738 Max fold change at or above threshold 3 9.08583268652738 Max fold change at or above threshold -0.00579573496536742 0.382657910917898 0.99108719989305 -1.36794937584558 5.18838179111481 3.37694882265826 0.650867449354121 AAAPPA No 4 0 AAPA 3 1 0 No No x = 1
1772539_at SPAC926.05c.S1 --- 9.07550836502749 --- --- --- --- 0.419550478458405 2.47740077972412 3.80763387680054 0.427515625953674 0.932372987270355 0.601073980331421 0.366210997104645 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC926.05c /DEF=zinc finger protein --- --- --- --- --- --- SPAC926.05c // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.56828329016127 5.90489322959916 1.28157810131684 9.07550836502749 1.01898495629069 Max fold change at or above threshold 1 9.07550836502749 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772825_at SPCP1E11.08.S1 --- 9.07072754772691 --- --- --- --- 9.14668560028076 6.26094198226929 12.4779644012451 8.64862442016602 0.0952147990465164 0.366210997104645 0.2958984375 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP1E11.08 /DEF=ribosomal protein (S8E subunit) (predicted) --- --- --- --- --- --- SPCP1E11.08 // |||ribosomal protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -9.07072754772691 -1.4609120522413 1.05851686920909 1.36420611208743 -1.0575884852802 Max fold change at or above threshold 4 9.07072754772691 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772194_at SPBC24C6.06.S1 --- 9.0705211768543 --- --- --- --- 6.26582908630371 7.5884861946106 6.99624156951904 0.814553797245026 0.129638999700546 0.274170011281967 0.111571997404099 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC24C6.06 /GEN=gpa1 /DEF=GTP binding (alpha-1 subunit) (PMID 1905818) --- --- --- --- --- --- SPBC24C6.06 // |gpa1||GTP binding |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.09336561743341 1.21109051812442 -9.0705211768543 1.11657076392523 -7.6923453153075 Max fold change at or above threshold 3 9.0705211768543 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772904_at SPCC1494.09c.S1 --- 9.06964987742524 --- --- --- --- 10.8771591186523 7.47905540466309 2.46865391731262 5.35371589660645 0.0561522990465164 0.398925989866257 0.533936023712158 0.334473013877869 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1494.09c /DEF=hypothetical protein --- --- --- --- --- --- SPCC1494.09c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.87895228657236 -1.45434931687638 -9.06964987742524 -4.40610935472609 -2.03170271428617 Max fold change at or above threshold 3 9.06964987742524 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1775070_at YPL201C.S1 Hypothetical protein 9.06338923298349 1412.63562011719 180.420356750488 --- --- --- --- 169.840393066406 1539.32958984375 1285.94165039063 191.00032043457 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL201C /GEN=AFT2 /DB_XREF=GI:6325055 /SEG=NC_001148:-169769,171154 /DEF=Hypothetical ORF /NOTE=Ypl201cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006122 // YPL201C SGDID:S0006122, Chr XVI from 171154-169769, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017034 // cdna:Genscan chromosome:SGD1:XVI:169769:171154:-1 // ensembl // 11 // --- /// GENEFINDER00000020981 // cdna:GeneFinder chromosome:SGD1:XVI:169769:172754:-1 // ensembl // 11 // --- /// YPL201C // cdna:known chromosome:SGD1:XVI:169769:171154:-1 gene:YPL201C // ensembl // 11 // --- --- No cerevisiae_gene 2.09790937823992 9.06338923298349 1.26625761634979 7.57147123351176 1.12458713140101 Max fold change at or above threshold 4 9.06338923298349 Max fold change at or above threshold -0.87166676172264 1.03317102698315 0.680730917628215 -0.842235182888724 796.527988433838 718.953185881419 0.902608817670112 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774407_at SPCC1494.07.S1 --- 9.06237365821929 --- --- --- --- 0.334103763103485 1.12495625019073 0.555525958538055 0.119091898202896 0.79931640625 0.850341975688934 0.850341975688934 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1494.07 /DEF=hypothetical protein --- --- --- --- --- --- SPCC1494.07 // |||hypothetical protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.51807859160958 3.3670864396768 9.06237365821929 1.6627348144115 -2.80542814536615 Max fold change at or above threshold 0 9.06237365821929 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774416_at SPAC31G5.09c.S1 --- 9.06226837537148 --- --- --- --- 0.585545003414154 5.30636596679688 3.01669383049011 2.04523134231567 0.850341975688934 0.0952147990465164 0.274170011281967 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31G5.09c /GEN=spk1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- AB084886 // Schizosaccharomyces pombe mRNA for spk1, complete cds, strain:CD16-1, clone:spk1-1. // gb // 11 // --- /// AB084887 // Schizosaccharomyces pombe mRNA for spk1, complete cds, strain:CD16-1, clone:spk1-2. // gb // 11 // --- /// SPAC31G5.09c // |spk1||serine/threonine protein kinase Spk1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.12346871601973 9.06226837537148 1.88770045038511 5.15194188815649 3.49286789297233 Max fold change at or above threshold 2 9.06226837537148 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780251_at SPAC1687.10.S1 --- 9.05830046683335 --- --- --- --- 10.3756542205811 9.35811519622803 13.6339950561523 1.14543056488037 0.129638999700546 0.219482004642487 0.219482004642487 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.10 /DEF=sequence orphan --- --- --- --- --- --- SPAC1687.10 // |mcp1||meiosis specific coiled-coil protein mcp1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.92842414608539 -1.10873332963065 -6.14758258792874 1.31403714563927 -9.05830046683335 Max fold change at or above threshold 3 9.05830046683335 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769863_at YJL025W.S1 involved in the transcription of 35S rRNA genes by RNA polymerase I; member of yeast Pol I core factor (CF) also composed of Rrn11p, Rrn6p and TATA-binding protein 9.05798828909484 40.3238973617554 292.230834960938 RRN7 6360 // transcription from RNA polymerase I promoter // traceable author statement 120 // RNA polymerase I transcription factor complex // traceable author statement 3701 // RNA polymerase I transcription factor activity // traceable author statement 273.352691650391 50.4697151184082 30.1780796051025 311.108978271484 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL025W /GEN=RRN7 /DB_XREF=GI:6322435 /SEG=NC_001142:+393883,395427 /DEF=involved in the transcription of 35S rRNA genes by RNA polymerase I /NOTE=Rrn7p; go_component: RNA polymerase I transcription factor complex [goid GO:0000120] [evidence TAS] [pmid 9932458]; go_function: RNA polymerase I transcription factor activity [goid GO:0003701] [evidence TAS] [pmid 9932458]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS] [pmid 9932458] --- --- --- --- --- --- S0003562 // RRN7 SGDID:S0003562, Chr X from 393883-395427, Verified ORF // sgd // 11 // --- /// GENSCAN00000024118 // cdna:Genscan chromosome:SGD1:X:393883:395427:1 // ensembl // 11 // --- /// GENEFINDER00000024380 // cdna:GeneFinder chromosome:SGD1:X:394450:395427:1 // ensembl // 11 // --- /// YJL025W // cdna:known chromosome:SGD1:X:393883:395427:1 gene:YJL025W // ensembl // 11 // --- --- No cerevisiae_gene -1.78337691618196 -5.41617266927446 -1.5060660665306 -9.05798828909484 1.13812297363211 Max fold change at or above threshold 4 9.05798828909484 Max fold change at or above threshold 0.730952040794945 -0.79056345131695 -0.92908474295697 0.988696153478974 166.277366161346 146.4874841482 0.880982706967206 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772852_at YBR033W.S1 Non-essential protein of unknown function 9.05727812606724 859.642578125 122.88688659668 --- --- --- --- 105.622619628906 762.631713867188 956.653442382813 140.151153564453 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR033W /GEN=RPL4A /DB_XREF=GI:6319507 /SEG=NC_001134:+301906,304665 /DEF=Non-essential protein of unknown function /NOTE=Ybr033wp --- --- --- --- --- --- S0000237 // EDS1 SGDID:S0000237, Chr II from 301944-304703, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022209 // cdna:GeneFinder chromosome:SGD1:II:301944:304703:1 // ensembl // 11 // --- /// GENSCAN00000021165 // cdna:Genscan chromosome:SGD1:II:302322:304703:1 // ensembl // 11 // --- /// YBR033W // cdna:known chromosome:SGD1:II:301944:304703:1 gene:YBR033W // ensembl // 11 // --- --- No cerevisiae_gene 1.13471044269327 7.22034462453793 2.79720933753477 9.05727812606724 1.32690472984725 Max fold change at or above threshold 4 9.05727812606724 Max fold change at or above threshold -0.890818291197601 0.626847179734678 1.07502983133123 -0.811058719868307 491.26473236084 432.907717031139 0.881210655914056 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771834_at SPCC4B3.10c.S1 --- 9.04818716717268 --- --- --- --- 0.852694630622864 7.71534061431885 0.268996685743332 0.325795143842697 0.805419981479645 0.171387001872063 0.969726979732513 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4B3.10c /GEN=ipk1 /DEF=inositol 1,3,4,5,6-pentakisphosphate (IP5) kinase (PMID 1096048) --- --- --- --- --- --- D89240 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1537. // gb // 11 // --- /// SPCC4B3.10c // |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.65054005396371 9.04818716717268 -1.18674697745745 -3.16990757066977 -2.61727237725363 Max fold change at or above threshold 1 9.04818716717268 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770390_at SPBC27B12.11c.S1 --- 9.04764433473316 --- --- --- --- 5.37423801422119 0.767828166484833 6.31202602386475 0.593993067741394 0.366210997104645 0.780517995357513 0.366210997104645 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC27B12.11c /DEF=transcription factor (predicted) --- --- --- --- --- --- SPBC27B12.11c // |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -5.50026749558373 -6.99927177564324 -1.13327211103993 1.1744969253617 -9.04764433473316 Max fold change at or above threshold 2 9.04764433473316 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776220_at SPCC18B5.01c.S1 --- 9.04613792901507 --- --- --- --- 0.512964010238647 0.73801064491272 1.9328852891922 2.60681772232056 0.985840022563934 0.888427972793579 0.633789002895355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18B5.01c /GEN=bfr1 /DEF=ABC transporter family --- --- --- --- --- --- SPCC18B5.01c // |bfr1|hba2, SPCPJ732.04c|ABC transporter family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.23955549688649 1.43871817550977 9.04613792901507 3.76807193216725 5.08187254912441 Max fold change at or above threshold 1 9.04613792901507 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773108_at SPBC651.01c.S1 --- 9.03642484275929 --- --- --- --- 3.96597504615784 0.438887625932693 1.18061709403992 0.765906691551209 0.432372987270355 0.953857004642487 0.828612983226776 0.688720703125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC651.01c /DEF=GTPase activity (predicted) --- --- --- --- --- --- SPBC651.01c // ||SPBC725.18c|GTPase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.62718355697633 -9.03642484275929 1.54309154375198 -3.35923905064494 -5.17814387823856 Max fold change at or above threshold 1 9.03642484275929 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772990_at SPAC664.06.S1 --- 9.02879448458887 --- --- --- --- 0.51657110452652 1.01793372631073 1.04812037944794 4.66401433944702 0.870360970497131 0.665526986122131 0.366210997104645 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC664.06 /GEN=rpl703 /DEF=60S ribosomal protein L7 --- --- --- --- --- --- SPAC664.06 // |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.69841326610851 1.9705587815326 4.32917635180938 2.02899537017005 9.02879448458887 Max fold change at or above threshold 1 9.02879448458887 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779066_at YKR103W.S1 Putative transporter of the multidrug resistance-associated protein (MRP) subfamily; adjacent ORFs YKR103W and YKR104W are merged in different strain backgrounds. 9.02685331989011 6.05264973640442 1.53513762354851 NFT1 6810 // transport // inferred from sequence similarity 16020 // membrane // inferred from sequence similarity 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from sequence similarity 0.904850900173187 8.16795635223389 3.93734312057495 2.16542434692383 0.665526986122131 0.0561522990465164 0.000732421991415322 0.028564453125 A M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR103W /GEN=NFT1 /DB_XREF=GI:6322956 /SEG=NC_001143:+652716,656372 /DEF=ORFs YKR103W and YKR104W are merged in different strain backgrounds. /NOTE=Nft1p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 9020838]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence ISS] [pmid 12796304]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 9020838] --- --- --- --- --- S0001811 // span:28-50,104-123,135-157,172-194,310-332,352-374,455-477,482-504,561-583,588-605,954-976,1012-1034,1083-1105,1110-1132,1193-1215 // numtm:15 S0001811 // NFT1 SGDID:S0001811, Chr XI from 652718-656374, Verified ORF // sgd // 11 // --- /// GENSCAN00000018504 // cdna:Genscan chromosome:SGD1:XI:652718:656374:1 // ensembl // 11 // --- /// GENEFINDER00000023171 // cdna:GeneFinder chromosome:SGD1:XI:652718:656374:1 // ensembl // 11 // --- /// YKR103W // cdna:known chromosome:SGD1:XI:652718:656374:1 gene:YKR103W // ensembl // 11 // --- --- No cerevisiae_gene 3.02767158607878 9.02685331989011 -1.40234947370599 4.35137227561065 2.39312835574277 Max fold change at or above threshold 2 9.02685331989011 Max fold change at or above threshold -0.911297679569592 1.37972105895628 0.0452486004246221 -0.513671979811306 3.79389367997646 3.17025143877002 0.835619473340035 AAMAPP No 3 0 AMPP 1 2 1 No No 1 < x = 2
1769970_at SPBC27B12.12c.S1 --- 9.02626289468279 --- --- --- --- 1.11611807346344 4.84774780273438 1.71610689163208 4.53081226348877 0.696289002895355 0.303710997104645 0.567627012729645 0.00415039015933871 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC27B12.12c /DEF=metal ion transporter (predicted) --- --- --- --- --- --- SPBC27B12.12c // |||metal ion transporter |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 9.02626289468279 4.34340050393707 6.02366780355661 1.53756751407744 4.05943812864633 Max fold change at or above threshold 2 9.02626289468279 Max fold change at or above threshold APAAAP No 3 0 AAAP 3 1 0 No No x = 1
1772639_at SPAC3G9.13c.S1 --- 9.02293842377292 --- --- --- --- 4.43817901611328 0.530133008956909 5.08890771865845 1.08619856834412 0.725830018520355 0.850341975688934 0.432372987270355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G9.13c /DEF=tryptophan-tRNA ligase (predicted) --- --- --- --- --- --- SPAC3G9.13c // |||tryptophan-tRNA ligase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.1378007923919 -8.37182167706525 -9.02293842377292 1.14662065234021 -4.08597391440055 Max fold change at or above threshold 2 9.02293842377292 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774333_at SPAC24B11.05.S1 --- 9.01883892773259 --- --- --- --- 0.498725324869156 0.459509998559952 1.36070346832275 0.364388018846512 0.805419981479645 0.753906011581421 0.696289002895355 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24B11.05 /DEF=pyrimidine 5-nucleotidase (predicted) (PMID 11934891) --- --- --- --- --- --- SPAC24B11.05 // |||pyrimidine 5'-nucleotidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 9.01883892773259 -1.08534161700964 1.00811326578204 2.72836248826896 -1.36866554078231 Max fold change at or above threshold 0 9.01883892773259 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773381_at SPBC17A3.10.S1 --- 9.01024207961381 --- --- --- --- 6.53251218795776 1.36830115318298 9.48191356658936 6.30168104171753 0.16552734375 0.633789002895355 0.0952147990465164 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17A3.10 /GEN=pas4 /DEF=zinc finger protein --- --- --- --- --- --- SPBC17A3.10 // |pas4||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -9.01024207961381 -4.77417721439585 1.09130591530264 1.45149573299972 -1.03663009040161 Max fold change at or above threshold 3 9.01024207961381 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777194_at SPAC18G6.12c.S1 --- 9.00280485799177 --- --- --- --- 0.802737772464752 0.44201472401619 1.05690538883209 0.939889252185822 0.969726979732513 0.805419981479645 0.943848013877869 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18G6.12c /GEN=B22918-1 /DEF=B22918 domain --- --- --- --- --- --- SPAC18G6.12c // |B22918-1||B22918 domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.13089869432097 -1.81608830848664 9.00280485799177 1.31662595817179 1.17085464821215 Max fold change at or above threshold 0 9.00280485799177 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771637_at SPBC16G5.11c.S1 --- 9.00211348098741 --- --- --- --- 0.630514800548553 5.62177515029907 2.37821936607361 0.383479505777359 0.533936023712158 0.149657994508743 0.274170011281967 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16G5.11c /GEN=bag101 /DEF=BAG-family --- --- --- --- --- --- AF095789 // Schizosaccharomyces pombe BAG-family molecular chaperone regulator-1A protein mRNA, complete cds. // gb // 11 // --- /// SPBC16G5.11c // |bag101|bag1-a, bag1|BAG-family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.74781777010994 8.91616682972085 9.00211348098741 3.77186921544829 -1.64419425562371 Max fold change at or above threshold 1 9.00211348098741 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779935_at SPCC1322.02.S1 --- 8.99145894327172 --- --- --- --- 4.74699831008911 1.79338979721069 3.20176005363464 1.27494084835052 0.5 0.753906011581421 0.601073980331421 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1322.02 /DEF=sequence orphan --- --- --- --- --- --- SPCC1322.02 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.27304788252384 -2.64694173986729 -8.99145894327172 -1.48262150522501 -3.72330866661823 Max fold change at or above threshold 2 8.99145894327172 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776259_at SPBC215.11c.S1 --- 8.99132469719524 --- --- --- --- 1.8222348690033 1.16712093353271 1.34428000450134 0.202665895223618 0.718505859375 0.780517995357513 0.633789002895355 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC215.11c /DEF=aldoketo reductase --- --- --- --- --- --- SPBC215.11c // |||aldo/keto reductase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -2.47798054658987 -1.56130767313687 4.88439955635262 -1.35554710544047 -8.99132469719524 Max fold change at or above threshold 0 8.99132469719524 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772219_at SPAC977.16c.S1 --- 8.9733600386782 --- --- --- --- 0.88122820854187 7.9075779914856 1.37128448486328 2.53454232215881 0.696289002895355 0.366210997104645 0.533936023712158 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC977.16c /GEN=dak2 /DEF=dihydroxyacetone kinase (PMID 9804990) --- --- --- --- --- --- SPAC977.16c // |dak2||dihydroxyacetone kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.0548337061999 8.9733600386782 1.44018501468695 1.55610597978052 2.87614751501499 Max fold change at or above threshold 2 8.9733600386782 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778939_at SPCC18.16c.S1 --- 8.96581662523242 --- --- --- --- 3.79223108291626 1.03890216350555 6.37571430206299 3.93200874328613 0.303710997104645 0.780517995357513 0.194580003619194 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18.16c /GEN=fmn1 /DEF=riboflavin kinase activity (PMID 12595258) --- --- --- --- --- --- SPCC18.16c // |fmn1||riboflavin kinase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -8.96581662523242 -3.65022926713347 1.26472355629435 1.68125680177697 1.03685895118564 Max fold change at or above threshold 3 8.96581662523242 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774544_at SPBC1604.20c.S1 --- 8.95686005888835 --- --- --- --- 1.84715843200684 6.42499256134033 7.9340353012085 4.83470678329468 0.79931640625 0.466064006090164 0.398925989866257 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1604.20c /GEN=tea2 /DEF=kinesin-like protein --- --- --- --- --- --- SPBC1604.20c // |tea2|klp4|kinesin-like protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.95686005888835 3.47831157848216 -4.0881197855827 4.29526518339231 2.61737526111501 Max fold change at or above threshold 3 8.95686005888835 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773503_at SPBC4.02c.S1 --- 8.9550775149831 --- --- --- --- 6.67699480056763 1.65356576442719 0.745609939098358 0.765986084938049 0.49169921875 0.780517995357513 0.888427972793579 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4.02c /DEF=conserved fungal protein --- --- --- --- --- --- AB001290 // Fission yeast mRNA, partial cds. // gb // 11 // --- /// SPBC4.02c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.11292614815016 -4.03793725306149 -4.65075140135265 -8.9550775149831 -8.7168617444371 Max fold change at or above threshold 1 8.9550775149831 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773849_at SPAPB2B4.04c.S1 --- 8.95419932024105 --- --- --- --- 1.81578040122986 7.6768684387207 16.2588596343994 5.41100740432739 0.432372987270355 0.0952147990465164 0.0375977009534836 0.111571997404099 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB2B4.04c /DEF=P-type calcium ATPase (PMID 12707717) --- --- --- --- --- --- SPAPB2B4.04c // |||P-type calcium ATPase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.84240766235531 4.2278617136307 4.08672001533627 8.95419932024105 2.97998998153214 Max fold change at or above threshold 3 8.95419932024105 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1776053_at SPAC31G5.11.S1 --- 8.95316841087187 --- --- --- --- 0.432441651821136 0.407252550125122 3.87172293663025 0.428145974874496 0.932372987270355 0.962401986122131 0.366210997104645 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31G5.11 /GEN=pac2 /DEF=cAMP-independent regulatory protein (PMID 8536311) --- --- --- --- --- --- D43748 // Yeast mRNA for Pac2p, complete cds. // gb // 11 // --- /// AB084888 // Schizosaccharomyces pombe mRNA for pac2, complete cds. // gb // 11 // --- /// SPAC31G5.11 // |pac2||cAMP-independent regulatory protein Pac2 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.1710830977294 -1.06185130501522 4.6375820156862 8.95316841087187 -1.01003320642661 Max fold change at or above threshold 1 8.95316841087187 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780033_at SPAC3H1.12c.S1 --- 8.95210818421544 --- --- --- --- 0.827869534492493 7.41117763519287 0.701335370540619 0.614971935749054 0.753906011581421 0.432372987270355 0.828612983226776 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H1.12c /GEN=snt2 /DEF=Lid2 complex (PMID 12488447) --- --- --- --- --- --- SPAC3H1.12c // |snt2||Lid2 complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.3261788867536 8.95210818421544 4.53709829102105 -1.18041891121837 -1.34619075500433 Max fold change at or above threshold 1 8.95210818421544 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777926_at SPAC22F3.08c.S1 --- 8.94919739180067 --- --- --- --- 0.620617926120758 5.55403232574463 3.84206295013428 0.350260436534882 0.904784977436066 0.26611328125 0.171387001872063 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F3.08c /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPAC22F3.08c // |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.13688225234126 8.94919739180067 -3.31641592664558 6.19070572799842 -1.77187561421586 Max fold change at or above threshold 2 8.94919739180067 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773764_at SPCC18B5.02c.S1 --- 8.9403623288236 --- --- --- --- 0.810357987880707 6.16045475006104 7.24489402770996 0.560839891433716 0.725830018520355 0.149657994508743 0.194580003619194 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18B5.02c /DEF=cinnamoyl-coa reductase pseudogene --- --- --- --- --- --- SPCC18B5.02c // |||cinnamoyl-coa reductase pseudogene|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 6.67226330142853 7.60213984707203 5.96424933421235 8.9403623288236 -1.4449007644751 Max fold change at or above threshold 2 8.9403623288236 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773067_at SPBC3F6.01c.S1 --- 8.93492800312037 --- --- --- --- 0.342915415763855 0.897339701652527 3.06392455101013 1.34900975227356 0.888427972793579 0.665526986122131 0.432372987270355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3F6.01c /DEF=serinethreonine protein phosphatase (predicted) --- --- --- --- --- --- SPBC3F6.01c // |||serine/threonine protein phosphatase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.0120841289822 2.61679603891144 5.62677002540862 8.93492800312037 3.93394315408247 Max fold change at or above threshold 1 8.93492800312037 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777954_at SPAC20H4.05c.S1 --- 8.93108561330431 --- --- --- --- 6.57956695556641 7.5096492767334 2.1369469165802 0.739843785762787 0.274170011281967 0.334473013877869 0.366210997104645 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20H4.05c /DEF=phosphate epimerase (predicted) --- --- --- --- --- --- SPAC20H4.05c // |||phosphate epimerase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.93108561330431 1.14135919999722 -2.05201024729751 -3.07895666687679 -8.89318405071525 Max fold change at or above threshold 2 8.93108561330431 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770024_at SPBC19F5.01c.S1 --- 8.92898015275342 --- --- --- --- 9.31314754486084 7.9170355796814 5.98516464233398 2.13952851295471 0.014160200022161 0.0952147990465164 0.165771484375 0.171387001872063 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19F5.01c /GEN=puc1 /DEF=cyclin --- --- --- --- --- --- SPBC19F5.01c // |puc1|SPBP8B7.32c|cyclin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.92898015275342 -1.17634276758368 -3.52835857619408 -1.55603865581032 -4.35289713994009 Max fold change at or above threshold 3 8.92898015275342 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
RPTR-Sc-X58791-2_s_at AFFX-Sc-X58791-2 --- 8.92365311070853 --- --- --- --- 19.0441379547119 6.89178657531738 16.3392524719238 4.16987371444702 0.219482004642487 0.366210997104645 0.303710997104645 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL X58791 /FEA=CDS_2 /DB_XREF=CAA41598.1 GI:48448 SPTREMBL:Q56699 /PROD=luciferase beta subunit /GEN=luxB --- --- --- --- --- --- AFFX-Sc-X58791-2 // --- // affx // --- // --- --- No No -8.92365311070853 -2.76330930254248 -2.50163182369389 -1.16554524066728 -4.56707786826523 Max fold change at or above threshold 4 8.92365311070853 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776850_at SPBC428.12c.S1 --- 8.9225867380703 --- --- --- --- 3.84256911277771 0.96884697675705 0.976867437362671 5.35325050354004 0.398925989866257 0.870360970497131 0.753906011581421 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC428.12c /DEF=RNA-binding protein --- --- --- --- --- --- SPBC428.12c // |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.9225867380703 -3.96612592593276 -1.48762449942247 -3.93356249354755 1.39314358347879 Max fold change at or above threshold 2 8.9225867380703 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776212_at SPAC19B12.09.S1 --- 8.91806255009323 --- --- --- --- 0.346290558576584 0.508222758769989 1.31942880153656 3.0882408618927 0.95166015625 0.953857004642487 0.665526986122131 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19B12.09 /GEN=srp14 /DEF=protein signal sequence binding activity --- --- --- --- --- --- SPAC19B12.09 // |srp14||signal recognition particle subunit Srp14|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.35340596484419 1.467619448994 1.09857255634733 3.8101783859197 8.91806255009323 Max fold change at or above threshold 1 8.91806255009323 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770030_at SPBC56F2.10c.S1 --- 8.91759507982455 --- --- --- --- 5.30301189422607 1.62051022052765 7.79314136505127 2.99775338172913 0.725830018520355 0.805419981479645 0.149657994508743 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC56F2.10c /DEF=dolichyl-phosphate beta-glucosyltransferase (predicted) --- --- --- --- --- --- SPBC56F2.10c // |||dolichyl-phosphate beta-glucosyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.91759507982455 -3.2724334762291 -1.61435145911465 1.46956890169084 -1.76899538385885 Max fold change at or above threshold 3 8.91759507982455 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772182_at SPAPB1E7.09.S1 --- 8.91399845527581 --- --- --- --- 1.08874106407166 9.70503616333008 8.27441883087158 6.05925035476685 0.398925989866257 0.00415039015933871 0.111571997404099 0.0676269978284836 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1E7.09 /DEF=glycosyl transferase family 39 --- --- --- --- --- --- SPAPB1E7.09 // |ogm2|oma2|protein O-mannosyltransferase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.31206713396727 8.91399845527581 7.20136533121239 7.59998782440248 5.56537321381685 Max fold change at or above threshold 3 8.91399845527581 Max fold change at or above threshold AAPAAA No 3 0 APAA 3 1 0 No No x = 1
1777599_at SPBC21H7.02.S1 --- 8.91255336597211 --- --- --- --- 0.513719797134399 3.11190676689148 4.5785551071167 1.09361565113068 0.828612983226776 0.665526986122131 0.725830018520355 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21H7.02 /GEN=taf10 /DEF=transcription initiation factor activity --- --- --- --- --- --- SPBC21H7.02 // |taf10||transcription factor TFIID complex subunit Taf10 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.26507504109503 6.05759556912178 1.93517847288969 8.91255336597211 2.12881741609145 Max fold change at or above threshold 2 8.91255336597211 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772546_at SPAC19A8.02.S1 --- 8.9112075061659 --- --- --- --- 7.44124794006348 1.76058840751648 10.792818069458 3.94531178474426 0.398925989866257 0.780517995357513 0.129638999700546 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19A8.02 /DEF=pleckstrin homology domain --- --- --- --- --- --- SPAC19A8.02 // |||pleckstrin homology domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.19671179212458 -4.22656874729753 -8.9112075061659 1.45040430803948 -1.88609882971412 Max fold change at or above threshold 3 8.9112075061659 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775247_at SPAC823.14.S1 --- 8.90531591330213 --- --- --- --- 5.57343196868896 11.9061145782471 1.16828548908234 7.3656005859375 0.398925989866257 0.194580003619194 0.665526986122131 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC823.14 /DEF=conserved protein (fungal and bacterial) --- --- --- --- --- --- SPAC823.14 // |||phosphatase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.41151630334999 2.13622677106934 -8.90531591330213 -4.77060788717557 1.32155566396374 Max fold change at or above threshold 3 8.90531591330213 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773861_at SPAC4G8.12c.S1 --- 8.90382686835266 --- --- --- --- 4.56173419952393 0.945497274398804 4.14484453201294 0.512334108352661 0.533936023712158 0.888427972793579 0.567627012729645 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G8.12c /DEF=PMP protein --- --- --- --- --- --- SPAC4G8.12c // |||PMP protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.27594215320933 -4.82469312502726 -1.66286900329718 -1.10058029059742 -8.90382686835266 Max fold change at or above threshold 2 8.90382686835266 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777280_at SPBC3D6.09.S1 --- 8.90361331166123 --- --- --- --- 6.24236726760864 1.02336347103119 1.28124737739563 0.701104938983917 0.432372987270355 0.884033203125 0.828612983226776 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3D6.09 /GEN=dpb4 /DEF=DNA polymerase epsilon (4th subunit) (predicted) --- --- --- --- --- --- SPBC3D6.09 // |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.30216677117534 -6.09985351667726 -1.84234405869688 -4.87210149869528 -8.90361331166123 Max fold change at or above threshold 1 8.90361331166123 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769996_at SPBC776.11.S1 --- 8.90007754306912 --- --- --- --- 8.10679626464844 1.36963129043579 6.58353757858276 2.9768922328949 0.366210997104645 0.753906011581421 0.567627012729645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC776.11 /GEN=rpl2801 /DEF=60S ribosomal protein Ll28B 27a --- --- --- --- --- --- SPBC776.11 // |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.90007754306912 -5.91896251294683 -4.24079132643962 -1.23137388795669 -2.7232414311367 Max fold change at or above threshold 3 8.90007754306912 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771732_at SPCC23B6.02c.S1 --- 8.89340843615405 --- --- --- --- 5.80445051193237 0.652668833732605 1.88088476657867 2.30861830711365 0.533936023712158 0.981445014476776 0.805419981479645 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC23B6.02c /DEF=lysine-rich protein --- --- --- --- --- --- SPCC23B6.02c // |||lysine-rich protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -7.47631582402138 -8.89340843615405 -5.93269905417386 -3.0860213315942 -2.51425300321273 Max fold change at or above threshold 1 8.89340843615405 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778242_at SPBP35G2.11c.S1 --- 8.89119516503767 --- --- --- --- 2.01932001113892 10.4716939926147 17.9541683197021 6.56711673736572 0.466064006090164 0.601073980331421 0.274170011281967 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP35G2.11c /DEF=zinc finger protein --- --- --- --- --- --- SPBP35G2.11c // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.41260350791686 5.18575259733528 4.16320737051224 8.89119516503767 3.25214265254659 Max fold change at or above threshold 3 8.89119516503767 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774849_at SPCC31H12.06.S1 --- 8.88236372254497 --- --- --- --- 0.741792738437653 6.5888729095459 3.44670701026917 5.36599540710449 0.870360970497131 0.357177734375 0.533936023712158 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC31H12.06 /DEF=sequence orphan --- --- --- --- --- --- SPCC31H12.06 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.47389362515736 8.88236372254497 -2.00082169717846 4.6464555820923 7.23382035042057 Max fold change at or above threshold 3 8.88236372254497 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774775_at YHR184W.S1 Protein involved in the control of meiotic nuclear division and coordination of meiosis with spore formation; transcription is induced midway through meiosis 8.8789988448506 26.7389087677002 12.8138070106506 SSP1 6461 // protein complex assembly // inferred from mutant phenotype /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype /// 30476 // spore wall assembly (sensu Fungi) // inferred from physical interaction 5628 // prospore membrane // inferred from direct assay --- 12.0932788848877 20.5915718078613 32.8862457275391 13.5343351364136 0.107177734375 0.000244141003349796 0.00122069998178631 0.0676269978284836 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR184W /GEN=SSP1 /DB_XREF=GI:6321978 /SEG=NC_001140:+472742,474457 /DEF=Involved in the control of meiotic nuclear divisions & spore formation; dispensable for mitosis, premeiotic DNA synthesis, recombination, meiosis I, meiosis II, & initiation of prospore walls; required for spore wall elongation /NOTE=Ssp1p; go_component: prospore membrane [goid GO:0005628] [evidence IDA] [pmid 11742972]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP] [pmid 11742972]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence IMP,IPI] [pmid 11742972] --- --- --- --- --- --- S0001227 // SSP1 SGDID:S0001227, Chr VIII from 472743-474458, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020235 // cdna:GeneFinder chromosome:SGD1:VIII:472743:474458:1 // ensembl // 11 // --- /// GENSCAN00000016707 // cdna:Genscan chromosome:SGD1:VIII:473370:474458:1 // ensembl // 11 // --- /// YHR184W // cdna:known chromosome:SGD1:VIII:472743:474458:1 gene:YHR184W // ensembl // 11 // --- --- No cerevisiae_gene -8.8789988448506 1.70272859857664 -2.28039368719384 2.7193820667309 1.11916174804558 Max fold change at or above threshold 4 8.8789988448506 Max fold change at or above threshold -0.809079491705684 0.0858474659174672 1.38055867740815 -0.657326651619935 19.7763578891754 9.49607434504416 0.480173063122095 AAPAPA No 2 0 APPA 2 2 0 No No 1 < x = 2
1776960_at SPAC19D5.01.S1 --- 8.87736475140191 --- --- --- --- 4.07424259185791 2.41961622238159 0.45894730091095 2.29202365875244 0.274170011281967 0.567627012729645 0.725830018520355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19D5.01 /GEN=pyp2 /DEF=serinethreonine protein phosphatase --- --- --- --- --- --- X59599 // S.pombe pyp2-cDNA for protein-tyrosine phosphatase. // gb // 10 // --- /// SPAC19D5.01 // |pyp2||serine/threonine protein phosphatase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.27461861918486 -1.6838383517894 -1.3597675364581 -8.87736475140191 -1.77757440517675 Max fold change at or above threshold 1 8.87736475140191 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772600_at SPAC1071.01c.S1 --- 8.87549578880346 --- --- --- --- 5.19869613647461 7.7726879119873 5.6053638458252 1.12349998950958 0.0805663987994194 0.00415039015933871 0.219482004642487 0.533936023712158 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1071.01c /GEN=pta1 /DEF=CPF complex (PMID 14617822) --- --- --- --- --- --- SPAC1071.01c // |pta1|SPAC4H3.15c|involved in polyadenylation |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.87549578880346 1.49512256687851 -1.45449015028369 1.07822494307705 -4.62723291946259 Max fold change at or above threshold 3 8.87549578880346 Max fold change at or above threshold AAPAAA No 3 0 APAA 3 1 0 No No x = 1
1772304_at SPBPB21E7.08.S1 --- 8.87378445403268 --- --- --- --- 3.75331020355225 3.24509239196777 3.59737157821655 2.57241201400757 0.274170011281967 0.422607421875 0.424072265625 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB21E7.08 /DEF=pseudogene --- --- --- --- --- --- SPBPB21E7.08 // ||SPAPB21E7.08|pseudogene|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.87378445403268 -1.15661119937368 -1.71815304368288 -1.04334793388594 -1.45906261637495 Max fold change at or above threshold 4 8.87378445403268 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774320_at SPAC17A2.15.S1 --- 8.86906148927505 --- --- --- --- 0.807587027549744 5.20373010635376 6.20255184173584 2.44782161712646 0.5 0.398925989866257 0.149657994508743 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A2.15 /DEF=dubious --- --- --- --- --- --- SPAC17A2.15 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.86906148927505 6.44355336184896 4.20174887383348 7.68035100880046 3.03103137324193 Max fold change at or above threshold 2 8.86906148927505 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775947_at SPAC977.10.S1 --- 8.86773182135932 --- --- --- --- 0.898353099822998 0.685905814170837 0.735082149505615 3.34211039543152 0.870360970497131 0.84521484375 0.753906011581421 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC977.10 /GEN=sod2 /DEF=CPA1 sodium ionproton antiporter (PMID 8643524) --- --- --- --- --- --- SPAC977.10 // |sod2||CPA1 sodium ion/proton antiporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.86773182135932 -1.30973244615076 -1.26688003432173 -1.22211252229046 3.72026366479952 Max fold change at or above threshold 1 8.86773182135932 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775625_at SPAC22F8.08.S1 --- 8.86491714756558 --- --- --- --- 5.10673999786377 5.21277475357056 5.4365758895874 2.55165076255798 0.366210997104645 0.171387001872063 0.274170011281967 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F8.08 /DEF=COPII-coated vesicle component (predicted) --- --- --- --- --- --- D89149 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0600. // gb // 11 // --- /// SPAC22F8.08 // |||GTPase activating protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.65667289913929 1.02076368794008 -8.86491714756558 1.06458834635435 -2.0013475483394 Max fold change at or above threshold 4 8.86491714756558 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776980_at SPAC7D4.09c.S1 --- 8.8574724048431 --- --- --- --- 0.524672329425812 2.54333853721619 0.761579394340515 0.153636917471886 0.888427972793579 0.601073980331421 0.805419981479645 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC7D4.09c /DEF=involved in cell polarity (predicted) --- --- --- --- --- --- SPAC7D4.09c // |||steroid dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.8574724048431 4.847479835652 1.04935245402436 1.45153336973949 -3.41501468565862 Max fold change at or above threshold 1 8.8574724048431 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776475_at SPBC9B6.06.S1 --- 8.84130066404388 --- --- --- --- 3.23910188674927 0.36636033654213 3.01446461677551 1.12625885009766 0.432372987270355 0.932372987270355 0.5 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC9B6.06 /GEN=mrpl10 /DEF=mitochondrial ribosomal protein subunit YmL10Yml18 --- --- --- --- --- --- SPBC9B6.06 // |mrpl10||mitochondrial ribosomal protein subunit L15|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.4433489401011 -8.84130066404388 1.74011499378247 -1.07451978992344 -2.87598351521802 Max fold change at or above threshold 2 8.84130066404388 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777313_at SPCC126.05c.S1 --- 8.83947641329497 --- --- --- --- 2.19883847236633 2.28940010070801 1.67827081680298 3.22143125534058 0.366210997104645 0.432372987270355 0.5 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC126.05c /GEN=mrpl17 /DEF=mitochondrial ribosomal protein subunit YmL17YmL30 --- --- --- --- --- --- SPCC126.05c // |mrpl17||mitochondrial ribosomal protein subunit L17|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -8.83947641329497 1.04118612143629 1.79674076618549 -1.31018096147022 1.46506043796558 Max fold change at or above threshold 1 8.83947641329497 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1778253_at SPBC19G7.14c.S1 --- 8.8387758740251 --- --- --- --- 0.30358624458313 2.68333077430725 0.618626952171326 0.170198261737823 0.725830018520355 0.696289002895355 0.888427972793579 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19G7.14c /DEF=sequence orphan --- --- --- --- --- --- SPBC19G7.14c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.45683065454713 8.8387758740251 2.37184204760263 2.0377305072593 -1.78372118189303 Max fold change at or above threshold 1 8.8387758740251 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769910_at SPAC22G7.10.S1 --- 8.83551623361662 --- --- --- --- 2.25585079193115 18.0907173156738 19.9316062927246 3.9106228351593 0.888427972793579 0.466064006090164 0.334473013877869 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22G7.10 /DEF=CPF complex (predicted) --- --- --- --- --- --- SPAC22G7.10 // |||mRNA cleavage and polyadenylation specificity factor complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.88230601526741 8.01946537438632 1.52339510220336 8.83551623361662 1.73354676166838 Max fold change at or above threshold 3 8.83551623361662 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775379_at SPCC1450.13c.S1 --- 8.83545726501839 --- --- --- --- 3.4059796333313 5.16325283050537 1.86450684070587 0.385489910840988 0.303710997104645 0.303710997104645 0.398925989866257 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1450.13c /DEF=riboflavin synthase activity (PMID 14690539) --- --- --- --- --- --- AF505789 // Schizosaccharomyces pombe riboflavin synthase mRNA, complete cds. // gb // 11 // --- /// SPCC1450.13c // |||riboflavin synthase activity |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.60192063203841 1.51593767031875 -1.91845039391735 -1.82674558171203 -8.83545726501839 Max fold change at or above threshold 2 8.83545726501839 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771907_at SPAC23H3.11c.S1 --- 8.8347432249554 --- --- --- --- 0.769402921199799 0.457810521125793 1.73372256755829 3.84105181694031 0.633789002895355 0.888427972793579 0.665526986122131 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H3.11c /DEF=glucosidase activity (predicted) --- --- --- --- --- --- SPAC23H3.11c // |||glucosidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- AB084891 // gb // 1 // Cross Hyb Matching Probes /// AB084891 // gb // 2 // Negative Strand Matching Probes No No -1.98901548545667 -1.68061432775239 8.8347432249554 2.253335046941 4.99225010863049 Max fold change at or above threshold 1 8.8347432249554 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772257_at SPBC28F2.06c.S1 --- 8.83401998765208 --- --- --- --- 0.703984022140503 3.28959536552429 1.57044064998627 3.71161961555481 0.633789002895355 0.567627012729645 0.5 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC28F2.06c /GEN=mdm12 /DEF=Mdm10pMdm12pMmm1p complex --- --- --- --- --- --- SPBC28F2.06c // |mdm12||Mdm10p/Mdm12p/Mmm1p complex|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.90084180688902 4.67282674331456 8.83401998765208 2.2307901892592 5.27230661325156 Max fold change at or above threshold 2 8.83401998765208 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779871_at YJL219W.S1 Putative hexose transporter that is nearly identical to Hxt9p, has similarity to major facilitator superfamily (MFS) transporters and is involved in pleiotropic drug resistance /// Putative hexose transporter that is nearly identical to Hxt11p, has similarity to major facilitator superfamily (MFS) transporters, expression of HXT9 is regulated by transcription factors Pdr1p and Pdr3p /// Protein of unknown function with similarity to hexose transporter family members, possible pseudogene /// Protein of unknown function with similarity to hexose transporter family members, possible pseudogene 8.83310008998316 10.2773796319962 10.4670066833496 HXT11 /// HXT9 /// HXT12 8645 // hexose transport // inferred from genetic interaction 5886 // plasma membrane // inferred from sequence similarity 5353 // fructose transporter activity // inferred from genetic interaction /// 5354 // galactose transporter activity // inferred from genetic interaction /// 5355 // glucose transporter activity // inferred from genetic interaction /// 15578 // mannose transporter activity // inferred from genetic interaction /// 15149 // hexose transporter activity // inferred from genetic interaction 11.3638620376587 16.9724102020264 3.58234906196594 9.57015132904053 0.171387001872063 0.0375977009534836 0.366210997104645 0.0461426004767418 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL219W /GEN=HXT9 /DB_XREF=GI:6322242 /SEG=NC_001142:+19497,21200 /DEF=Putative hexose transporter that is nearly identical to Hxt11p, has similarity to major facilitator superfamily (MFS) transporters, expression of HXT9 is regulated by transcription factors Pdr1p and Pdr3p /NOTE=Hxt9p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 8929273]; go_function: fructose transporter activity [goid GO:0005353] [evidence IGI] [pmid 10618490]; go_function: galactose transporter activity [goid GO:0005354] [evidence IGI] [pmid 10618490]; go_function: glucose transporter activity [goid GO:0005355] [evidence IGI] [pmid 10618490]; go_function: mannose transporter activity [goid GO:0015578] [evidence IGI] [pmid 10618490]; go_process: hexose transport [goid GO:0008645] [evidence IGI] [pmid 10618490] --- --- --- --- --- S0001432 // span:2-19,29-51,56-78,88-110,123-142,245-267,274-296,318-340,352-374,378-400 // numtm:10 /// S0001433 // span:55-77 // numtm:1 /// S0003755 // span:55-77,111-130,140-159,166-188,198-220,233-252,355-377,384-406,428-450,462-484,488-510 // numtm:11 /// S0005516 // span:55-77,111-130,140-159,166-188,198-220,233-252,355-377,384-406,428-450,462-484,488-510 // numtm:11 S0003755 // HXT9 SGDID:S0003755, Chr X from 19497-21200, Verified ORF // sgd // 11 // --- /// GENSCAN00000023973 // cdna:Genscan chromosome:SGD1:X:19497:21200:1 // ensembl // 11 // --- /// GENEFINDER00000024530 // cdna:GeneFinder chromosome:SGD1:X:19497:21200:1 // ensembl // 11 // --- /// YJL219W // cdna:known chromosome:SGD1:X:19497:21200:1 gene:YJL219W // ensembl // 11 // --- --- No cerevisiae_gene -1.64190662720868 1.49354243705014 -8.83310008998316 -3.172181672163 -1.18742762229633 Max fold change at or above threshold 4 8.83310008998316 Max fold change at or above threshold 0.179767872352555 1.19647495154378 -1.23085018732085 -0.145392636575481 10.3721931576729 5.51638547538117 0.531843689326244 AAPAAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1769535_at SPBC685.09.S1 --- 8.83301743640573 --- --- --- --- 4.86133337020874 4.31203508377075 7.22121667861938 0.550359308719635 0.432372987270355 0.466064006090164 0.432372987270355 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC685.09 /GEN=orc2 /DEF=origin recognition complex (subunit 2) --- --- --- --- --- --- SPBC685.09 // |orc2|orp2|origin recognition complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.47041810755417 -1.12738724888983 -1.04258265891556 1.48543951395568 -8.83301743640573 Max fold change at or above threshold 3 8.83301743640573 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774404_at YDR106W.S1 Actin-related protein 8.82802969923329 75.1022796630859 10.838089466095 ARP10 --- 5737 // cytoplasm // inferred from direct assay --- 8.53268337249756 75.3267822265625 74.8777770996094 13.1434955596924 0.149657994508743 0.0107421996071935 0.00415039015933871 0.0805663987994194 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR106W /GEN=ARP10 /DB_XREF=GI:6320311 /SEG=NC_001136:+666998,667852 /DEF=actin-related protein /NOTE=Arp10p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11011149]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002513 // ARP10 SGDID:S0002513, Chr IV from 666999-667853, Verified ORF // sgd // 11 // --- /// GENSCAN00000025175 // cdna:Genscan chromosome:SGD1:IV:666999:667853:1 // ensembl // 11 // --- /// YDR106W // cdna:known chromosome:SGD1:IV:666999:667853:1 gene:YDR106W // ensembl // 11 // --- --- No cerevisiae_gene 6.97660566746994 8.82802969923329 3.0967489485778 8.77540790285908 1.54037071175714 Max fold change at or above threshold 4 8.82802969923329 Max fold change at or above threshold -0.926957327494043 0.87094545937695 0.858859547853057 -0.802847679735964 42.9701845645905 37.1511181482237 0.864578975507545 APPPPA Called_P_>2EXP 3 0 APPA 2 2 0 Yes No 1 < x = 2
1778373_at SPAC16A10.06c.S1 --- 8.82576160159386 --- --- --- --- 0.682288229465485 6.00322580337524 6.02171325683594 4.78992891311646 0.567627012729645 0.24609400331974 0.149657994508743 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16A10.06c /DEF=zinc finger protein --- --- --- --- --- --- SPAC16A10.06c // |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.77965513274034 8.79866535009444 6.60323090178937 8.82576160159386 7.02038919368279 Max fold change at or above threshold 3 8.82576160159386 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776527_at SPBC646.03.S1 --- 8.82197704921837 --- --- --- --- 1.82422709465027 2.44376993179321 0.420443445444107 0.206782117486 0.366210997104645 0.696289002895355 0.969726979732513 0.981445014476776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC646.03 /DEF=glutamyl-tRNA amidotransferase complex (predicted) --- --- --- --- --- --- SPBC646.03 // |||glutamyl-tRNA amidotransferase complex|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.04489977798727 1.33961935932199 -7.97880726609509 -4.33881682404008 -8.82197704921837 Max fold change at or above threshold 0 8.82197704921837 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774569_at SPCC70.09c.S1 --- 8.81555020805804 --- --- --- --- 6.36662483215332 4.16128063201904 0.7222039103508 5.43275547027588 0.111571997404099 0.334473013877869 0.432372987270355 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC70.09c /DEF=conserved fungal protein --- --- --- --- --- --- SPCC70.09c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.509838327806 -1.52996766984789 -1.09690392287633 -8.81555020805804 -1.17189607870019 Max fold change at or above threshold 3 8.81555020805804 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774654_at SPBC13A2.03.S1 --- 8.81275624783107 --- --- --- --- 0.701799750328064 1.21819806098938 6.18479013442993 1.74257683753967 0.953857004642487 0.828612983226776 0.601073980331421 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13A2.03 /DEF=phosphatidate cytidylyltransferase (predicted) --- --- --- --- --- --- SPBC13A2.03 // |||phosphatidate cytidylyltransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.48834023002407 1.73582002618257 -1.56118544988058 8.81275624783107 2.48301148115981 Max fold change at or above threshold 1 8.81275624783107 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778677_at YDR009W.S1 Transcriptional regulator involved in activation of the GAL genes in response to galactose; forms a complex with Gal80p and Gal4p to relieve inhibition by Gal80p; binds galactose and ATP but does not have galactokinase activity 8.81155200700846 885.506561279297 153.45471572876 GAL3 6012 // galactose metabolism // traceable author statement /// 6355 // regulation of transcription, DNA-dependent // traceable author statement 5737 // cytoplasm // inferred from direct assay 5515 // protein binding // inferred from direct assay 114.921119689941 758.379699707031 1012.63342285156 191.988311767578 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR009W /GEN=GAL3 /DB_XREF=GI:6320212 /SEG=NC_001136:+463431,464993 /DEF=Transcriptional regulator involved in activation of the GAL genes in response to galactose; forms a complex with Gal80p and Gal4p to relieve inhibition by Gal80p; binds galactose and ATP but does not have galactokinase activity /NOTE=Gal3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10866670]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 8628318]; go_process: galactose metabolism [goid GO:0006012] [evidence TAS] [pmid 7601342]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence TAS] [pmid 7601342] --- --- --- --- --- --- S0002416 // GAL3 SGDID:S0002416, Chr IV from 463431-464993, Verified ORF // sgd // 11 // --- /// GENSCAN00000025106 // cdna:Genscan chromosome:SGD1:IV:463431:464993:1 // ensembl // 11 // --- /// GENEFINDER00000023679 // cdna:GeneFinder chromosome:SGD1:IV:463641:464993:1 // ensembl // 11 // --- /// YDR009W // cdna:known chromosome:SGD1:IV:463431:464993:1 gene:YDR009W // ensembl // 11 // --- --- No cerevisiae_gene -1.36882716778617 6.59913253328151 1.89796229036547 8.81155200700846 1.67060947792334 Max fold change at or above threshold 4 8.81155200700846 Max fold change at or above threshold -0.927154202369467 0.547499831880787 1.13018889719447 -0.750534526705793 519.480638504028 436.345451253072 0.839964801209215 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778338_at SPCC1739.04c.S1 --- 8.81077919138355 --- --- --- --- 1.07703387737274 9.4895076751709 3.90945172309875 0.872810840606689 0.533936023712158 0.0461426004767418 0.334473013877869 0.2392578125 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1739.04c /DEF=exosome (RNase complex) (ISS) --- --- --- --- --- --- SPCC1739.04c // |||substrate-specific nuclear cofactor for exosome activity |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.86209136545685 8.81077919138355 5.73112476569802 3.62983171210479 -1.23398315793614 Max fold change at or above threshold 2 8.81077919138355 Max fold change at or above threshold AMPPAA No 4 0 APAA 3 1 0 No No x = 1
1777697_at YGL157W.S1 Oxidoreductase, catalyzes NADPH-dependent reduction of the bicyclic diketone bicyclo[2.2.2]octane-2,6-dione (BCO2,6D) to the chiral ketoalcohol (1R,4S,6S)-6-hydroxybicyclo[2.2.2]octane-2-one (BCO2one6ol) 8.80607862512091 105.008625030518 960.826507568359 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 16491 // oxidoreductase activity // inferred from direct assay /// 45552 // dihydrokaempferol 4-reductase activity // inferred from sequence similarity 916.682067871094 105.920738220215 104.09651184082 1004.97094726563 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL157W /GEN=RCK1 /DB_XREF=GI:6321281 /SEG=NC_001139:+209009,210052 /DEF=Oxidoreductase, catalyzes NADPH-dependent reduction of the bicyclic diketone bicyclo[2.2.2]octane-2,6-dione (BCO2,6D) to the chiral ketoalcohol (1R,4S,6S)-6-hydroxybicyclo[2.2.2]octane-2-one (BCO2one6ol) /NOTE=Ygl157wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: dihydrokaempferol 4-reductase activity [goid GO:0045552] [evidence ISS] [pmid 10903444]; go_function: oxidoreductase activity [goid GO:0016491] [evidence IDA] [pmid 14574691]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003125 // YGL157W SGDID:S0003125, Chr VII from 209011-210054, Verified ORF // sgd // 11 // --- /// GENSCAN00000019231 // cdna:Genscan chromosome:SGD1:VII:209011:210054:1 // ensembl // 11 // --- /// GENEFINDER00000021605 // cdna:GeneFinder chromosome:SGD1:VII:209011:210054:1 // ensembl // 11 // --- /// YGL157W // cdna:known chromosome:SGD1:VII:209011:210054:1 gene:YGL157W // ensembl // 11 // --- --- No cerevisiae_gene 1.27914772028533 -8.65441539847714 1.05304835854032 -8.80607862512091 1.09631352296394 Max fold change at or above threshold 4 8.80607862512091 Max fold change at or above threshold 0.774624329611711 -0.861888294364393 -0.865570474791221 0.952834439543904 532.917566299438 495.420150002288 0.92963749242208 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774115_at SPAC922.05c.S1 --- 8.79270275654249 --- --- --- --- 1.76353943347931 15.5062780380249 2.7841260433197 0.452009379863739 0.696289002895355 0.601073980331421 0.850341975688934 0.989257991313934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC922.05c /DEF=hypothetical protein --- --- --- --- --- --- SPAC922.05c // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.14046369347787 8.79270275654249 -1.83042779585793 1.57871493569433 -3.90155495005643 Max fold change at or above threshold 2 8.79270275654249 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775662_at SPBC3B9.07c.S1 --- 8.79094031297966 --- --- --- --- 0.593872249126434 5.22069549560547 1.31685924530029 1.29108190536499 0.951416015625 0.334473013877869 0.850341975688934 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B9.07c /GEN=rpa43 /DEF=localization DNA-directed RNA polymerase I complex (subunit) (PMID 10645483) --- --- --- --- --- --- AF129106 // Schizosaccharomyces pombe RNA polymerase I subunit Rpa43 (rpa43+) mRNA, complete cds. // gb // 11 // --- /// SPBC3B9.07c // |rpa43|rpa21|DNA-directed RNA polymerase I complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.19440186630031 8.79094031297966 -1.64287167072334 2.21741165248477 2.1740061221317 Max fold change at or above threshold 1 8.79094031297966 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770931_at SPCC16C4.06c.S1 --- 8.78859281314233 --- --- --- --- 2.65454936027527 1.84423351287842 8.801589012146 0.362274765968323 0.26708984375 0.567627012729645 0.0375977009534836 0.8837890625 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16C4.06c /DEF=tRNA pseudouridylate synthase (putative) --- --- --- --- --- --- SPCC16C4.06c // |||tRNA pseudouridylate synthase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.89138339677847 -1.43937811656623 -8.78859281314233 3.31566221516156 -7.32744758851734 Max fold change at or above threshold 2 8.78859281314233 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1775646_at SPBC1734.03.S1 --- 8.78755444797722 --- --- --- --- 5.18639898300171 4.36942386627197 8.77630138397217 6.57754373550415 0.665526986122131 0.774169921875 0.466064006090164 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1734.03 /DEF=dihydropteroate synthase (predicted) --- --- --- --- --- --- SPBC1734.03 // ||SPBC337.19|dihydropteroate synthase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/dihydroneopterin aldolase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.41143507948424 -1.1869754781714 -8.78755444797722 1.69217628893116 1.26822941255809 Max fold change at or above threshold 4 8.78755444797722 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777116_at SPAC8C9.06c.S1 --- 8.78678519492998 --- --- --- --- 12.9943237304688 7.3830771446228 11.5464773178101 5.94902467727661 0.053466796875 0.111571997404099 0.149657994508743 0.007568359375 M A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8C9.06c /DEF=hypothetical protein --- --- --- --- --- --- SPAC8C9.06c // |||mitochondrial translation regulator |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.53854614378337 -1.76001462207837 -8.78678519492998 -1.12539291186459 -2.18427800108192 Max fold change at or above threshold 4 8.78678519492998 Max fold change at or above threshold MPAAAP No 4 0 MAAP 2 1 1 No No x = 1
1778630_at SPAC13A11.01c.S1 --- 8.78626515772513 --- --- --- --- 0.652387380599976 1.1351603269577 1.11988925933838 5.73204851150513 0.904784977436066 0.828612983226776 0.665526986122131 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13A11.01c /GEN=rga8 /DEF=GTPase activating protein (PMID 14506270) --- --- --- --- --- --- AY375444 // Schizosaccharomyces pombe RhoGAP-like protein (rga8) mRNA, complete cds. // gb // 11 // --- /// SPAC13A11.01c // |rga8|SPAC2F7.18c|GTPase activating protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.89544792240356 1.7400096334079 -2.43782764887066 1.71660165821794 8.78626515772513 Max fold change at or above threshold 1 8.78626515772513 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779780_at SPBC1604.05.S1 --- 8.78383273843561 --- --- --- --- 11.3641719818115 12.227276802063 2.29731750488281 6.43043994903564 0.303710997104645 0.334473013877869 0.870360970497131 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1604.05 /GEN=pgi1 /DEF=glucose-6-phosphate isomerase (predicted) --- --- --- --- --- --- D89268 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1766. // gb // 11 // --- /// SPBC1604.05 // |pgi1||glucose-6-phosphate isomerase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.78383273843561 1.07594964434126 -1.41346362224282 -4.94671370311576 -1.76724642044372 Max fold change at or above threshold 3 8.78383273843561 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774431_at SPAC1006.05c.S1 --- 8.77950745031422 --- --- --- --- 8.97051906585693 8.1134147644043 8.40299034118652 7.51208448410034 0.24609400331974 0.303710997104645 0.567627012729645 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1006.05c /GEN=och1 /DEF=alpha-1,6-mannosyltransferase (PMID 11231017) --- --- --- --- --- --- SPAC1006.05c // |och1||alpha-1,6-mannosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.77950745031422 -1.10564039018601 -1.3499762942898 -1.06753890003761 -1.19414512507726 Max fold change at or above threshold 4 8.77950745031422 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778223_at YAR035W.S1 Outer mitochondrial carnitine acetyltransferase, minor ethanol-inducible enzyme involved in transport of activated acyl groups from the cytoplasm into the mitochondrial matrix 8.77870097199922 5508.61865234375 813.088073730469 YAT1 6066 // alcohol metabolism // inferred from genetic interaction /// 9437 // carnitine metabolism // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 4092 // carnitine O-acetyltransferase activity // inferred from sequence similarity 705.653625488281 6194.72216796875 4822.51513671875 920.522521972656 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR035W /GEN=YAT1 /DB_XREF=GI:6319337 /SEG=NC_001133:+190189,192252 /DEF=Outer carnitine acetyltransferase, mitochondrial /NOTE=Yat1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11914276]; go_function: carnitine O-acetyltransferase activity [goid GO:0004092] [evidence ISS] [pmid 11329169]; go_process: alcohol metabolism [goid GO:0006066] [evidence IGI] [pmid 11329169]; go_process: carnitine metabolism [goid GO:0009437] [evidence IMP] [pmid 11329169] --- --- --- --- --- --- S0000080 // YAT1 SGDID:S0000080, Chr I from 190187-192250, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018223 // cdna:GeneFinder chromosome:SGD1:I:190187:192250:1 // ensembl // 11 // --- /// GENSCAN00000020395 // cdna:Genscan chromosome:SGD1:I:190187:192250:1 // ensembl // 11 // --- /// YAR035W // cdna:known chromosome:SGD1:I:190187:192250:1 gene:YAR035W // ensembl // 11 // --- --- No cerevisiae_gene 1.1687313047548 8.77870097199922 1.38852446354166 6.83411090445653 1.30449626944904 Max fold change at or above threshold 4 8.77870097199922 Max fold change at or above threshold -0.88647178204171 1.09540541441795 0.599957816522395 -0.80889144889863 3160.85336303711 2769.63101058225 0.876228882671433 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772984_at SPAC11E3.05.S1 --- 8.77861164650166 --- --- --- --- 0.746493756771088 6.55317878723145 6.47596216201782 1.23360323905945 0.633789002895355 0.219482004642487 0.0676269978284836 0.35693359375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11E3.05 /DEF=WD repeat protein --- --- --- --- --- --- SPAC11E3.05 // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.45170582095126 8.77861164650166 4.09139348840359 8.67517256946554 1.65252988102047 Max fold change at or above threshold 2 8.77861164650166 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1772878_at SPAC10F6.05c.S1 --- 8.7781125609602 --- --- --- --- 2.07459807395935 0.579167783260345 1.24765717983246 0.955825865268707 0.466064006090164 0.904784977436066 0.805419981479645 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC10F6.05c /GEN=ubc6 /DEF=ubiquitin conjugating enzyme --- --- --- --- --- --- D89248 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1578. // gb // 11 // --- /// SPAC10F6.05c // |ubc6||ubiquitin conjugating enzyme|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.91481785165165 -3.58203293401557 -8.7781125609602 -1.6627949628262 -2.17047701819214 Max fold change at or above threshold 0 8.7781125609602 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777054_at SPBC1347.10.S1 --- 8.77496154487779 --- --- --- --- 1.50648176670074 6.26482200622559 0.429297834634781 1.08553731441498 0.567627012729645 0.334473013877869 0.828612983226776 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1347.10 /GEN=cdc23 /DEF=MCM-associated protein (PMID 12185500) --- --- --- --- --- --- SPBC1347.10 // |cdc23|mcm10|MCM-associated protein Mcm10p |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.77496154487779 4.15857804900341 -2.04045226071829 -3.50917625285104 -1.38777520283826 Max fold change at or above threshold 1 8.77496154487779 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774238_at SPBC337.06c.S1 --- 8.77137251010304 --- --- --- --- 2.6605064868927 6.29145383834839 3.85246777534485 1.80396747589111 0.398925989866257 0.149657994508743 0.366210997104645 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC337.06c /GEN=cwf15 /DEF=complexed with Cdc5p (PMID 11884590) --- --- --- --- --- --- D89143 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0565. // gb // 10 // --- /// SPBC337.06c // |cwf15||complexed with Cdc5p |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.77137251010304 2.36475793964194 1.75158771331376 1.44802044059072 -1.47480845550083 Max fold change at or above threshold 3 8.77137251010304 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769926_at SPBC776.02c.S1 --- 8.77008307001448 --- --- --- --- 6.24176502227783 0.991490364074707 14.7377214431763 6.42856216430664 0.466064006090164 0.5 0.030273400247097 0.030273400247097 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC776.02c /GEN=dis2 /DEF=PP1 --- --- --- --- --- --- SPBC776.02c // |dis2|sds1, bws1|serine/threonine protein phosphatase PP1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.33176073726785 -6.29533604000566 -8.77008307001448 2.36114646907967 1.0299269743994 Max fold change at or above threshold 3 8.77008307001448 Max fold change at or above threshold AAAAPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1778421_at SPAC31A2.07c.S1 --- 8.76734061174936 --- --- --- --- 3.04822325706482 5.80841541290283 2.49595022201538 0.34767934679985 0.219482004642487 0.194580003619194 0.366210997104645 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31A2.07c /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPAC31A2.07c // |||ATP-dependent RNA helicase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.84024106044696 1.90550852843234 -4.48163313593911 -1.22126764795954 -8.76734061174936 Max fold change at or above threshold 2 8.76734061174936 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770285_at SPAC23H4.03c.S1 --- 8.76727178412644 --- --- --- --- 1.0506899356842 9.21168422698975 6.46915912628174 1.68300437927246 0.805419981479645 0.567627012729645 0.194580003619194 0.455810546875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H4.03c /GEN=erv25 /DEF=COPII-coated vesicle component (predicted) --- --- --- --- --- --- SPAC23H4.03c // |erv25||COPII-coated vesicle component |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.60495167821207 8.76727178412644 -1.96273010592138 6.15705824008779 1.60180879450082 Max fold change at or above threshold 2 8.76727178412644 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774603_at SPBC16C6.11.S1 --- 8.75575382452093 --- --- --- --- 3.59418153762817 1.44850218296051 3.82335948944092 1.53945910930634 0.24609400331974 0.805419981479645 0.5 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16C6.11 /GEN=rpl3201 /DEF=60S ribosomal protein L32 --- --- --- --- --- --- SPBC16C6.11 // |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.75575382452093 -2.48130902383746 -1.44300522350414 1.0637635994213 -2.33470412815815 Max fold change at or above threshold 2 8.75575382452093 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780233_at YDR225W.S1 One of two nearly identical (see also HTA2) histone H2A subtypes; core histone required for chromatin assembly and chromosome function; DNA damage-dependent phosphorylation by Mec1p facilitates DNA repair; acetylated by Nat4p /// One of two nearly identical (see also HTA1) histone H2A subtypes; core histone required for chromatin assembly and chromosome function; DNA damage-dependent phosphorylation by Mec1p facilitates DNA repair; acetylated by Nat4p 8.75396742566377 3984.63330078125 537.590103149414 HTA1 /// HTA2 6281 // DNA repair // inferred from mutant phenotype /// 6333 // chromatin assembly or disassembly // traceable author statement 788 // nuclear nucleosome // traceable author statement 3677 // DNA binding // traceable author statement 492.122955322266 3661.23828125 4308.0283203125 583.057250976563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR225W /GEN=HTA1 /DB_XREF=GI:6320431 /SEG=NC_001136:+915522,915920 /DEF=Histone H2A (HTA1 and HTA2 code for nearly identical proteins) /NOTE=Hta1p; go_component: nuclear nucleosome [goid GO:0000788] [evidence TAS] [pmid 2275823]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 2275823]; go_process: chromatin assembly/disassembly [goid GO:0006333] [evidence TAS] [pmid 2275823] --- --- --- --- --- --- S0002633 // HTA1 SGDID:S0002633, Chr IV from 915524-915922, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023963 // cdna:GeneFinder chromosome:SGD1:IV:915524:915922:1 // ensembl // 11 // --- /// GENSCAN00000025273 // cdna:Genscan chromosome:SGD1:IV:915524:915922:1 // ensembl // 11 // --- /// YDR225W // cdna:known chromosome:SGD1:IV:915524:915922:1 gene:YDR225W // ensembl // 11 // --- --- No cerevisiae_gene 5.64230887173014 7.4396819771442 1.64482656300724 8.75396742566377 1.18477962604843 Max fold change at or above threshold 4 8.75396742566377 Max fold change at or above threshold -0.880998969178306 0.697296732616145 1.01941373803531 -0.835711501473145 2261.11170196533 2007.93509247006 0.888030029973656 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779731_at SPBPB2B2.08.S1 --- 8.7491880608785 --- --- --- --- 5.16601848602295 16.3339653015137 9.23316192626953 4.54210567474365 0.334473013877869 0.171387001872063 0.129638999700546 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB2B2.08 /DEF=sequence orphan --- --- --- --- --- --- SPBPB2B2.08 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.7491880608785 3.16180930163267 1.69599570829633 1.78728782160779 -1.13736202016359 Max fold change at or above threshold 4 8.7491880608785 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1780067_at SPAC3A12.16c.S1 --- 8.74729678848617 --- --- --- --- 1.07045137882233 9.36355590820313 7.44255495071411 6.50349283218384 0.525390625 0.0561522990465164 0.149657994508743 0.0952147990465164 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A12.16c /GEN=tim17 /DEF=TIM23 translocase complex --- --- --- --- --- --- SPAC3A12.16c // |tim17||TIM23 translocase complex|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.52323729004765 8.74729678848617 4.24193290634312 6.95272582945538 6.07546775206059 Max fold change at or above threshold 3 8.74729678848617 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1770505_at SPCC1620.05.S1 --- 8.73930189444503 --- --- --- --- 3.66930365562439 6.56344842910767 0.877037107944489 1.47856736183167 0.432372987270355 0.366210997104645 0.567627012729645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1620.05 /DEF=Rab geranylgeranyltransferase (alpha subunit) (predicted) --- --- --- --- --- --- SPCC1620.05 // |||Rab geranylgeranyltransferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.11813270479381 1.78874496228925 -8.73930189444503 -4.18374960692842 -2.48166147200681 Max fold change at or above threshold 2 8.73930189444503 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776294_at YJL214W.S1 Protein of unknown function with similarity to hexose transporter family members, expression is induced by low levels of glucose and repressed by high levels of glucose 8.73860067172149 77.6139984130859 11.2814083099365 HXT8 8645 // hexose transport // inferred from genetic interaction 5886 // plasma membrane // inferred from sequence similarity 5353 // fructose transporter activity // inferred from genetic interaction /// 5355 // glucose transporter activity // inferred from genetic interaction /// 15578 // mannose transporter activity // inferred from genetic interaction 12.3699684143066 47.1317825317383 108.096214294434 10.1928482055664 0.0676269978284836 0.00805663969367743 0.00122069998178631 0.00122069998178631 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL214W /GEN=HXT8 /DB_XREF=GI:6322247 /SEG=NC_001142:+26887,28596 /DEF=Protein of unknown function with similarity to hexose transporter family members, expression is induced by low levels of glucose and repressed by high levels of glucose /NOTE=Hxt8p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 8929273]; go_function: fructose transporter activity [goid GO:0005353] [evidence IGI] [pmid 10618490]; go_function: glucose transporter activity [goid GO:0005355] [evidence IGI] [pmid 10618490]; go_function: mannose transporter activity [goid GO:0015578] [evidence IGI] [pmid 10618490]; go_process: hexose transport [goid GO:0008645] [evidence IGI] [pmid 10618490] --- --- --- --- --- S0003750 // span:117-136,146-165,172-194,204-226,239-258,361-383,390-412,432-454,466-488,492-514 // numtm:10 S0003750 // HXT8 SGDID:S0003750, Chr X from 26887-28596, Verified ORF // sgd // 11 // --- /// GENSCAN00000023977 // cdna:Genscan chromosome:SGD1:X:26887:28596:1 // ensembl // 11 // --- /// GENEFINDER00000024445 // cdna:GeneFinder chromosome:SGD1:X:26887:28596:1 // ensembl // 11 // --- /// YJL214W // cdna:known chromosome:SGD1:X:26887:28596:1 gene:YJL214W // ensembl // 11 // --- --- No cerevisiae_gene 2.20102966250791 3.81017808236498 2.08255818507527 8.73860067172149 -1.21359291974458 Max fold change at or above threshold 4 8.73860067172149 Max fold change at or above threshold -0.702186394015118 0.0587548926660443 1.39327538088269 -0.74984387953362 44.4477033615112 45.6826495366613 1.02778425164301 APPPPP Called_P_>2EXP 2 0 APPP 1 3 0 Yes Yes 2 < x = 3
1773655_at SPBC16G5.18.S1 --- 8.73803703514367 --- --- --- --- 6.62229681015015 4.65325736999512 3.4043436050415 1.6927695274353 0.111571997404099 0.274170011281967 0.149657994508743 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16G5.18 /GEN=erg24 /DEF=C-14 sterol reductase activity (PMID 7698661) --- --- --- --- --- --- L36039 // Schizosaccharomyces pombe C-14 sterol reductase mRNA, complete cds. // gb // 11 // --- /// SPBC16G5.18 // |erg24||C-14 sterol reductase activity |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.73803703514367 -1.4231529192543 -2.64906954713055 -1.94524923992489 -3.91210776353206 Max fold change at or above threshold 3 8.73803703514367 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771124_at SPBC1306.02.S1 --- 8.72989740580296 --- --- --- --- 8.82248401641846 1.01060569286346 9.95445919036865 5.21926116943359 0.0107421996071935 0.601073980331421 0.014160200022161 0.00805663969367743 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1306.02 /DEF=WD repeat protein --- --- --- --- --- --- SPBC1306.02 // ||SPBC4.08|WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.50971362417306 -8.72989740580296 -3.1204575591924 1.12830572113745 -1.69037028997265 Max fold change at or above threshold 3 8.72989740580296 Max fold change at or above threshold PAAAPP No 4 0 PAPP 1 3 0 No No 2 < x = 3
1774522_at YDR073W.S1 One of 11 subunits of the SWI/SNF chromatin remodeling complex involved in transcriptional regulation; interacts with a highly conserved 40-residue sequence of Snf2p 8.72772889114417 883.012878417969 121.346969604492 SNF11 6338 // chromatin remodeling // traceable author statement 16514 // SWI/SNF complex // traceable author statement /// 16585 // chromatin remodeling complex // traceable author statement 16251 // general RNA polymerase II transcription factor activity // traceable author statement 108.403091430664 946.11279296875 819.912963867188 134.29084777832 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR073W /GEN=SNF11 /DB_XREF=GI:6320278 /SEG=NC_001136:+592434,592943 /DEF=component of SWI/SNF global transcription activator complex /NOTE=Snf11p; go_component: SWI/SNF complex [goid GO:0016514] [evidence TAS] [pmid 9726966]; go_component: nucleosome remodeling complex [goid GO:0005679] [evidence TAS] [pmid 9048886]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9048886]; go_process: chromatin remodeling [goid GO:0006338] [evidence TAS] [pmid 9048886] --- --- --- --- --- --- S0002480 // SNF11 SGDID:S0002480, Chr IV from 592435-592944, Verified ORF // sgd // 11 // --- /// YDR073W // cdna:known chromosome:SGD1:IV:592435:592944:1 gene:YDR073W // ensembl // 11 // --- --- No cerevisiae_gene 5.89809474677678 8.72772889114417 1.17161179031587 7.56355702633826 1.23881012991419 Max fold change at or above threshold 4 8.72772889114417 Max fold change at or above threshold -0.889123704173224 1.0023729285064 0.71742152905135 -0.830670753384524 502.17992401123 442.881941772917 0.88191885138565 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779252_at SPBC1677.03c.S1 --- 8.72158782880454 --- --- --- --- 1.2634904384613 11.019642829895 8.49248600006104 4.48876714706421 0.753906011581421 0.466064006090164 0.432372987270355 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1677.03c /DEF=threonine dehydratase (predicted) --- --- --- --- --- --- SPBC1677.03c // |||threonine ammonia-lyase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.17381100688881 8.72158782880454 6.29101137228432 6.72144856941166 3.55267203488353 Max fold change at or above threshold 3 8.72158782880454 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774913_at SPAC1687.17c.S1 --- 8.72060644264644 --- --- --- --- 8.95660400390625 6.92603015899658 5.04662704467773 2.85320091247559 0.030273400247097 0.334473013877869 0.601073980331421 0.398925989866257 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.17c /DEF=conserved eukaryotic family --- --- --- --- --- --- SPAC1687.17c // |||conserved eukaryotic family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.87577936827459 -1.29318004662051 -8.72060644264644 -1.77477034157934 -3.1391424153636 Max fold change at or above threshold 4 8.72060644264644 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1775217_at SPCC132.02.S1 --- 8.72047949702498 --- --- --- --- 0.742329180240631 6.47346639633179 0.429443150758743 0.522389471530914 0.888427972793579 0.030273400247097 0.753906011581421 0.567627012729645 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC132.02 /DEF=transcriptional regulator --- --- --- --- --- --- SPCC132.02 // |hst2||Sir2p family histone deacetylase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.23714987461677 8.72047949702498 2.70477317040485 -1.72858544589448 -1.42102630450258 Max fold change at or above threshold 1 8.72047949702498 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1770661_at SPAC17D4.03c.S1 --- 8.71840043324045 --- --- --- --- 0.780126094818115 6.79248952865601 3.53912544250488 3.88491868972778 0.805419981479645 0.219482004642487 0.334473013877869 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17D4.03c /DEF=metal transporter (predicted) --- --- --- --- --- --- D89239 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1535. // gb // 9 // --- /// SPAC17D4.03c // |||metal transporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.71840043324045 8.70691234888081 -2.50351622121297 4.53660692292318 4.97985994255652 Max fold change at or above threshold 3 8.71840043324045 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772363_at SPCC1795.09.S1 --- 8.71568723133544 --- --- --- --- 0.240473762154579 2.09589409828186 0.377164721488953 0.139999434351921 0.943848013877869 0.725830018520355 0.888427972793579 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1795.09 /GEN=yps1 /DEF=aspartic protease --- --- --- --- --- --- SPCC1795.09 // |yps1||aspartic protease|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.1599945866633 8.71568723133544 1.43381678470232 1.56842359062236 -1.7176766696792 Max fold change at or above threshold 0 8.71568723133544 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777310_at SPAC18B11.02c.S1 --- 8.71465596874063 --- --- --- --- 1.23437106609344 10.757119178772 1.86723697185516 1.76043319702148 0.850341975688934 0.171387001872063 0.533936023712158 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18B11.02c /DEF=DRAP deaminase activity (predicted) --- --- --- --- --- --- SPAC18B11.02c // |||pseudouridylate synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.97686441508674 8.71465596874063 -2.53761797835417 1.51270312724084 1.42617827440895 Max fold change at or above threshold 1 8.71465596874063 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774283_at SPBC1711.17.S1 --- 8.71081749607991 --- --- --- --- 0.731964588165283 6.37600994110107 0.797109007835388 0.690158843994141 0.981445014476776 0.870360970497131 0.953857004642487 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1711.17 /GEN=prp16 /DEF=ATP-dependent --- --- --- --- --- --- SPBC1711.17 // |prp16|SPBC17G9.01|ATP-dependent|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.27207706923757 8.71081749607991 1.34942486878201 1.08899941434789 -1.06057409034883 Max fold change at or above threshold 1 8.71081749607991 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777275_at SPAC664.05.S1 --- 8.70841124785797 --- --- --- --- 4.74019765853882 34.3040199279785 15.0901327133179 41.2795906066895 0.601073980331421 0.398925989866257 0.5 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC664.05 /GEN=rpl13 /DEF=60S ribosomal protein L13 --- --- --- --- --- --- AB016216 // Schizosaccharomyces pombe mRNA for ribosomal protein L13 homolog, complete cds. // gb // 11 // --- /// SPAC664.05 // |rpl13||60S ribosomal protein L13|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- U97372 // gb // 3 // Cross Hyb Matching Probes No No 7.03670678202157 7.23683322913434 3.82917186194631 3.18343955259652 8.70841124785797 Max fold change at or above threshold 4 8.70841124785797 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779592_at SPAC1006.03c.S1 --- 8.7069994210479 --- --- --- --- 6.28113460540771 0.72138911485672 8.69756889343262 2.79219841957092 0.274170011281967 0.6884765625 0.334473013877869 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1006.03c /DEF=hypothetical protein --- --- --- --- --- --- SPAC1006.03c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.8532554456858 -8.7069994210479 1.64047142477347 1.38471302397253 -2.24953017714727 Max fold change at or above threshold 3 8.7069994210479 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1779636_at SPAC17G8.04c.S1 --- 8.70559463144885 --- --- --- --- 0.900053203105927 1.60542571544647 7.83549833297729 0.77928763628006 0.79931640625 0.780517995357513 0.303710997104645 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G8.04c /GEN=arc5 /DEF=ARP23 actin-organizing complex --- --- --- --- --- --- SPAC17G8.04c // |arc5|arc16|ARP2/3 actin-organizing complex subunit Arc16|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.39362129118195 1.78370090779793 1.30758595789631 8.70559463144885 -1.15496918108741 Max fold change at or above threshold 1 8.70559463144885 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770244_at SPAC6C3.09.S1 --- 8.69845622823978 --- --- --- --- 7.38157606124878 5.78642559051514 2.05974864959717 4.49790859222412 0.0561522990465164 0.366210997104645 0.567627012729645 0.0952147990465164 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6C3.09 /DEF=seqeunce orphan --- --- --- --- --- --- SPAC6C3.09 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.69845622823978 -1.27567112819153 -1.3120179292232 -3.58372661765911 -1.64111295503201 Max fold change at or above threshold 3 8.69845622823978 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1777166_at SPBC1289.01c.S1 --- 8.69843537486896 --- --- --- --- 0.913209557533264 1.41787052154541 0.470827907323837 7.94349431991577 0.805419981479645 0.919434010982513 0.976073980331421 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1289.01c /GEN=cfh3 /DEF=Chs Four Homologue (pers. comm. Henar Montero) --- --- --- --- --- --- SPBC1289.01c // |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.58385858887285 1.55262339278985 -1.16730909712616 -1.9395824744627 8.69843537486896 Max fold change at or above threshold 1 8.69843537486896 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770621_at SPBC1289.05c.S1 --- 8.694488196504 --- --- --- --- 2.54777121543884 1.05668210983276 7.22170877456665 0.293032914400101 0.665526986122131 0.633789002895355 0.5 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1289.05c /GEN=vma10 /DEF=vacuolar ATP synthase (subunit G) (predicted) --- --- --- --- --- --- SPBC1289.05c // |vma10||vacuolar ATP synthase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- AB016047 // gb // 5 // Cross Hyb Matching Probes No No -4.16662764317543 -2.41110471326336 -1.26579134709349 2.834520121275 -8.694488196504 Max fold change at or above threshold 2 8.694488196504 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775196_at SPBC1773.16c.S1 --- 8.69438451845785 --- --- --- --- 3.2342631816864 1.47855389118195 1.09783935546875 0.371994495391846 0.5 0.870360970497131 0.828612983226776 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1773.16c /DEF=transcription factor (predicted) --- --- --- --- --- --- SPBC1773.16c // |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.05646109320251 -2.18745031951521 -1.00931407850376 -2.94602590586257 -8.69438451845785 Max fold change at or above threshold 1 8.69438451845785 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772836_at SPCC1235.12c.S1 --- 8.69060868740031 --- --- --- --- 0.408266484737396 2.35011744499207 3.21967482566834 3.26326370239258 0.567627012729645 0.601073980331421 0.601073980331421 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1235.12c /DEF=sequence orphan --- --- --- --- --- --- SPCC1235.12c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 8.69060868740031 5.75633203519926 1.68493286079793 7.88620899836851 7.99297474660837 Max fold change at or above threshold 2 8.69060868740031 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769565_at SPBC25H2.14.S1 --- 8.68034057316357 --- --- --- --- 1.05693697929382 9.17457294464111 2.1889967918396 0.875040709972382 0.997070014476776 0.870360970497131 0.780517995357513 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25H2.14 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC25H2.14 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.33701472834469 8.68034057316357 1.25267233085539 2.0710759815615 -1.20787177927663 Max fold change at or above threshold 1 8.68034057316357 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777773_at SPCC63.02c.S1 --- 8.67825324941708 --- --- --- --- 0.768322467803955 4.37274169921875 1.17665302753448 1.30213892459869 0.850341975688934 0.665526986122131 0.888427972793579 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC63.02c /DEF=glycosyl hydrolase family 13 --- --- --- --- --- --- SPCC63.02c // |||alpha-amylase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.01206381787283 5.69128443128452 8.67825324941708 1.53145726806302 1.69478178650757 Max fold change at or above threshold 1 8.67825324941708 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770195_at SPBC23E6.03c.S1 --- 8.67761179462675 --- --- --- --- 0.956360638141632 4.71614742279053 8.13701057434082 8.29892635345459 0.633789002895355 0.432372987270355 0.0952147990465164 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23E6.03c /DEF=protein N-terminal amidase (predicted) --- --- --- --- --- --- SPBC23E6.03c // |||protein N-terminal amidase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.01346423910892 4.93134831642045 5.7797659829322 8.50830769253781 8.67761179462675 Max fold change at or above threshold 3 8.67761179462675 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-Scv2-r2-Bs-dap-M_at AFFX-Scv2-r2-Bs-dap-M --- 8.67683370011929 --- --- --- --- 0.30601093173027 0.667350888252258 1.33278369903564 0.314003467559814 0.962401986122131 0.969726979732513 0.805419981479645 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=dapB, jojF /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2055-2578 of gb:L38424.1, not 100% identical /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. --- --- --- --- --- --- AFFX-Scv2-r2-Bs-dap-M // --- // affx // --- // --- --- AFFX_control No 8.67683370011929 2.18080734723715 1.13452872086477 4.35534669137379 1.02611846506382 Max fold change at or above threshold 0 8.67683370011929 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777846_at YBL002W.S1 One of two nearly identical (see HTB1) histone H2B subtypes required for chromatin assembly and chromosome function; Rad6p-Bre1p-Lge1p mediated ubiquitination regulates transcriptional activation, meiotic DSB formation and H3 methylation 8.67050345105233 836.167938232422 238.672584533691 HTB2 6333 // chromatin assembly or disassembly // traceable author statement 788 // nuclear nucleosome // traceable author statement 3677 // DNA binding // traceable author statement 196.899948120117 686.705200195313 985.630676269531 280.445220947266 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL002W /GEN=HTB2 /DB_XREF=GI:6319471 /SEG=NC_001134:+236457,236852 /DEF=Histone H2B (HTB1 and HTB2 code for nearly identical proteins) /NOTE=Htb2p; go_component: nuclear nucleosome [goid GO:0000788] [evidence TAS] [pmid 2275823]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 2275823]; go_process: chromatin assembly/disassembly [goid GO:0006333] [evidence TAS] [pmid 2275823] --- --- --- --- --- --- S0000098 // HTB2 SGDID:S0000098, Chr II from 236495-236890, Verified ORF // sgd // 11 // --- /// GENSCAN00000021138 // cdna:Genscan chromosome:SGD1:II:236495:236890:1 // ensembl // 11 // --- /// GENEFINDER00000022294 // cdna:GeneFinder chromosome:SGD1:II:236495:236890:1 // ensembl // 11 // --- /// YBL002W // cdna:known chromosome:SGD1:II:236495:236890:1 gene:YBL002W // ensembl // 11 // --- --- No cerevisiae_gene 8.67050345105233 3.48758446485925 1.32782249893154 5.00574370729776 1.42430317338724 Max fold change at or above threshold 4 8.67050345105233 Max fold change at or above threshold -0.926585801676134 0.406217483421367 1.21962006500473 -0.699251746749961 537.420261383057 367.500033614761 0.683822438456257 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775364_at YCR021C.S1 Hydrophobic plasma membrane localized, stress-responsive protein that negatively regulates the H(+)-ATPase Pma1p; induced by heat shock, ethanol treatment, weak organic acid, glucose limitation, and entry into stationary phase 8.66630369351992 8752.93774414063 1308.91247558594 HSP30 6950 // response to stress // inferred from direct assay 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from direct assay --- 1282.22546386719 11112.1552734375 6393.72021484375 1335.59948730469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR021C /GEN=HSP30 /DB_XREF=GI:6319869 /SEG=NC_001135:-156104,157102 /DEF=Protein induced by heat shock, ethanol treatment, and entry into stationary phase; located in plasma membrane /NOTE=Hsp30p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 1535043]; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 8319300]; go_function: heat shock protein activity [goid GO:0003773] [evidence IDA] [pmid 8319300]; go_process: protein folding [goid GO:0006457] [evidence TAS] [pmid 9847145]; go_process: response to stress [goid GO:0006950] [evidence IDA] [pmid 10206703] --- --- --- --- --- S0000615 // span:34-56,63-85,122-144,156-178,184-201,214-233,248-270 // numtm:7 S0000615 // HSP30 SGDID:S0000615, Chr III from 157102-156104, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022474 // cdna:Genscan chromosome:SGD1:III:156104:157102:-1 // ensembl // 11 // --- /// GENEFINDER00000023340 // cdna:GeneFinder chromosome:SGD1:III:156104:157030:-1 // ensembl // 11 // --- /// YCR021C // cdna:known chromosome:SGD1:III:156104:157102:-1 gene:YCR021C // ensembl // 11 // --- --- No cerevisiae_gene -1.55533965114104 8.66630369351992 1.90999782844445 4.98642430291496 1.04162608288602 Max fold change at or above threshold 4 8.66630369351992 Max fold change at or above threshold -0.795935441001572 1.29118549608163 0.289352849070198 -0.784602904150259 5030.92510986328 4709.80365100829 0.936170495119192 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770462_at SPCC11E10.08.S1 --- 8.66138680338016 --- --- --- --- 4.05524682998657 6.08825588226318 0.532959342002869 2.65194010734558 0.274170011281967 0.366210997104645 0.953857004642487 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC11E10.08 /GEN=rik1 /DEF=involved in chromatin silencing --- --- --- --- --- --- SPCC11E10.08 // |rik1||silencing protein Rik1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -8.66138680338016 1.50132806645541 -1.37341484223638 -7.60892344010126 -1.52916229848253 Max fold change at or above threshold 3 8.66138680338016 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778505_at SPCC4E9.01c.S1 --- 8.65183262033855 --- --- --- --- 0.872034311294556 7.5446949005127 3.44380402565002 1.50181436538696 0.466064006090164 0.194580003619194 0.466064006090164 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4E9.01c /GEN=rec11 /DEF=region specific activator of recombination (PMID 8299939) --- --- --- --- --- --- SPCC4E9.01c // |rec11|SPCC550.16c|region specific activator of recombination Rec11p |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.10328613724332 8.65183262033855 -1.41071907938585 3.94916115231477 1.72219641582392 Max fold change at or above threshold 2 8.65183262033855 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773323_at SPAC1687.12c.S1 --- 8.64574042061984 --- --- --- --- 6.77451801300049 1.72658002376556 0.783567130565643 0.855416238307953 0.432372987270355 0.828612983226776 0.919434010982513 0.746826171875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.12c /GEN=coq4 /DEF=involved in ubiquinone biosynthesis --- --- --- --- --- --- SPAC1687.12c // |coq4||ubiquinone biosynthesis protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.01218663515589 -3.92366291730034 -1.05971506458341 -8.64574042061984 -7.91955741499688 Max fold change at or above threshold 1 8.64574042061984 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772535_at SPAC1F3.10c.S1 --- 8.64248078691796 --- --- --- --- 11.631911277771 8.6248025894165 7.44415140151978 3.28822708129883 0.018554700538516 0.0239257998764515 0.24609400331974 0.366210997104645 P P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F3.10c /DEF=metallopeptidase --- --- --- --- --- --- SPAC1F3.10c // |oct1||metallopeptidase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.64248078691796 -1.3486582628621 -1.98408672697199 -1.56255705323192 -3.5374416030831 Max fold change at or above threshold 4 8.64248078691796 Max fold change at or above threshold PAPAAA No 4 0 PPAA 2 2 0 No No 1 < x = 2
1776488_at SPBC83.10.S1 --- 8.64189164784934 --- --- --- --- 9.01319408416748 5.22748947143555 9.72146224975586 1.51891553401947 0.533936023712158 0.780517995357513 0.696289002895355 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC83.10 /DEF=sequence orphan --- --- --- --- --- --- SPBC83.10 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.14984880814292 -1.72419172404231 -8.64189164784934 1.07858126197821 -5.93396662440872 Max fold change at or above threshold 3 8.64189164784934 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772050_at SPAC926.04c.S1 --- 8.63532062278154 --- --- --- --- 6.6317286491394 2.27496790885925 1.09986567497253 1.10083913803101 0.432372987270355 0.725830018520355 0.888427972793579 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC926.04c /GEN=swo1 /DEF=chaperone activity --- --- --- --- --- --- SPAC926.04c // |hsp90|swo1|heat shock protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.80946399615863 -2.91508668026213 -8.63532062278154 -6.02958052064404 -6.02424861183725 Max fold change at or above threshold 1 8.63532062278154 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776746_at SPAC4G9.19.S1 --- 8.63351360796703 --- --- --- --- 1.54315340518951 0.755320429801941 4.02699851989746 0.178739905357361 0.274170011281967 0.753906011581421 0.398925989866257 0.82275390625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G9.19 /DEF=DNAJ domain protein --- --- --- --- --- --- SPAC4G9.19 // |||DNAJ domain protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.22226676139631 -2.04304470566771 1.632163501497 2.60959053478089 -8.63351360796703 Max fold change at or above threshold 1 8.63351360796703 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772908_at SPAC24H6.01c.S1 --- 8.62156292163056 --- --- --- --- 0.610042750835419 2.00224804878235 1.7846223115921 3.97483849525452 0.822998046875 0.780517995357513 0.725830018520355 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24H6.01c /DEF=O-acyl transferase (predicted) --- --- --- --- --- --- SPAC24H6.01c // ||SPAPB21F2.01|O-acyl transferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- AB084859 // gb // 3 // Negative Strand Matching Probes /// SPNCRNA.47 // sanger // 3 // Negative Strand Matching Probes No No 8.62156292163056 3.28214382687178 -1.47004167968626 2.92540532470579 6.51567204070732 Max fold change at or above threshold 1 8.62156292163056 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777091_at SPBC13G1.07.S1 --- 8.61782613762278 --- --- --- --- 13.003288269043 13.2123546600342 2.18320226669312 1.74904131889343 0.334473013877869 0.24609400331974 0.601073980331421 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13G1.07 /DEF=zinc finger protein --- --- --- --- --- --- SPBC13G1.07 // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.83395335230612 1.01607796325557 -8.61782613762278 -5.95606209622482 -7.43452320341395 Max fold change at or above threshold 2 8.61782613762278 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776616_at SPBC887.15c.S1 --- 8.61756035883663 --- --- --- --- 0.751619577407837 2.6217987537384 3.16484141349792 2.9151246547699 0.885009765625 0.633789002895355 0.696289002895355 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC887.15c /DEF=sphingosine hydroxylase (predicted) --- --- --- --- --- --- SPBC887.15c // |||sphingosine hydroxylase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 8.61756035883663 3.4881991269844 -1.15221015003577 4.21069582090016 3.87845758997323 Max fold change at or above threshold 3 8.61756035883663 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771869_at SPAC11D3.03c.S1 --- 8.59870263221789 --- --- --- --- 0.263656258583069 0.71451336145401 0.628343999385834 2.26710176467896 0.999267578125 0.932372987270355 0.888427972793579 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11D3.03c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC11D3.03c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.10289373511615 2.71001858743623 -1.36485101758649 2.38319394640072 8.59870263221789 Max fold change at or above threshold 0 8.59870263221789 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774771_at SPBC27B12.04c.S1 --- 8.59444656456487 --- --- --- --- 0.819517314434052 7.04329776763916 3.99321627616882 4.75687408447266 0.850341975688934 0.219482004642487 0.398925989866257 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC27B12.04c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC27B12.04c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.24965614410535 8.59444656456487 1.02631014896192 4.87264418437149 5.80448271279991 Max fold change at or above threshold 3 8.59444656456487 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780096_at SPAC1039.05c.S1 --- 8.58927601585438 --- --- --- --- 0.62105530500412 1.72279798984528 5.33441543579102 3.59786081314087 0.850341975688934 0.567627012729645 0.24609400331974 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1039.05c /DEF=conserved fungal protein --- --- --- --- --- --- SPAC1039.05c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 7.19442273051531 2.77398482222746 -1.05730789603463 8.58927601585438 5.79314077852858 Max fold change at or above threshold 2 8.58927601585438 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777142_at SPAC29E6.05c.S1 --- 8.58288597881621 --- --- --- --- 0.649990737438202 5.57879638671875 1.78598880767822 4.3511700630188 0.904784977436066 0.601073980331421 0.366210997104645 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29E6.05c /DEF=peptide methionine sulfoxide reductase (predicted) --- --- --- --- --- --- SPAC29E6.05c // ||SPAC30.09c|peptide methionine sulfoxide reductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.13552336786091 8.58288597881621 -1.96078320316328 2.74771424392494 6.69420318229148 Max fold change at or above threshold 2 8.58288597881621 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773114_at SPBC15C4.02.S1 --- 8.57457355241779 --- --- --- --- 4.18773698806763 3.57320642471313 4.94429206848145 4.24324750900269 0.171387001872063 0.24609400331974 0.194580003619194 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC15C4.02 /DEF=ABC1 family --- --- --- --- --- --- SPBC15C4.02 // |||ABC1 family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.57457355241779 -1.17198294481513 -5.96880323480728 1.1806596456677 1.01325549362179 Max fold change at or above threshold 4 8.57457355241779 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771924_at SPAPB1A10.06c.S1 --- 8.57043193836647 --- --- --- --- 7.83636093139648 2.70484447479248 9.96435070037842 2.55179238319397 0.303710997104645 0.296630859375 0.274170011281967 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1A10.06c /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPAPB1A10.06c // |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.57043193836647 -2.89715767558048 -4.44682740850629 1.27155331251476 -3.07092417980653 Max fold change at or above threshold 4 8.57043193836647 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777915_at SPCC1442.12.S1 --- 8.5672836458371 --- --- --- --- 8.65038681030273 6.9415922164917 6.11817932128906 1.00970005989075 0.171387001872063 0.111571997404099 0.366210997104645 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1442.12 /DEF=CDP-diacylglycerol--serine O-phosphatidyltransferase (predicted) --- --- --- --- --- --- SPCC1442.12 // |||CDP-diacylglycerol--serine O-phosphatidyltransferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.46521536860224 -1.24616752763888 -1.64635964382492 -1.41388252224032 -8.5672836458371 Max fold change at or above threshold 3 8.5672836458371 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777382_at YDL156W.S1 Hypothetical protein 8.5605291363971 57.873254776001 501.967727661133 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 447.900238037109 52.3215599060059 63.4249496459961 556.035217285156 0.000244141003349796 0.0375977009534836 0.0239257998764515 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL156W /GEN=STE7 /DB_XREF=GI:6320045 /SEG=NC_001136:+174919,176487 /DEF=Hypothetical ORF /NOTE=Ydl156wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.CAP C-terminal domain-like // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; CAP C-terminal domain-like // 6.30000019073486 --- S0002315 // YDL156W SGDID:S0002315, Chr IV from 174919-176487, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023606 // cdna:GeneFinder chromosome:SGD1:IV:174919:176487:1 // ensembl // 11 // --- /// GENSCAN00000024983 // cdna:Genscan chromosome:SGD1:IV:175207:176487:1 // ensembl // 11 // --- /// YDL156W // cdna:known chromosome:SGD1:IV:174919:176487:1 gene:YDL156W // ensembl // 11 // --- --- No cerevisiae_gene -1.56420486136978 -8.5605291363971 -1.67527640106748 -7.06189347468224 1.24142648309798 Max fold change at or above threshold 4 8.5605291363971 Max fold change at or above threshold 0.645553907355229 -0.874673180555595 -0.832002342152192 1.06112161535256 279.920491218567 260.210254952586 0.929586304381731 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1778465_at SPBC32H8.01c.S1 --- 8.55915158037039 --- --- --- --- 6.74903345108032 5.08372688293457 1.40490877628326 0.788516640663147 0.5 0.828612983226776 0.932372987270355 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32H8.01c /DEF=hypothetical protein --- --- --- --- --- --- SPBC32H8.01c // ||SPBP22H7.10c|conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.34560289021053 -1.32757593129874 -2.81287538337634 -4.80389443429568 -8.55915158037039 Max fold change at or above threshold 2 8.55915158037039 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771454_at SPAC22A12.15c.S1 --- 8.55910855369557 --- --- --- --- 6.75531482696533 9.74880981445313 7.97744846343994 1.82381570339203 0.24609400331974 0.0676269978284836 0.334473013877869 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22A12.15c /GEN=bip1 /DEF=BiP (PMID 1373379) --- --- --- --- --- --- SPAC22A12.15c // |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.55910855369557 1.44313182496523 -6.04372048140139 1.18091438634306 -3.70394597129603 Max fold change at or above threshold 3 8.55910855369557 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772364_at SPAC2C4.16c.S1 --- 8.55054636704994 --- --- --- --- 12.2517013549805 7.16781520843506 8.83015537261963 1.43285596370697 0.129638999700546 0.0952147990465164 0.00805663969367743 0.366210997104645 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2C4.16c /GEN=rps801 /DEF=40S ribosomal protein (S8) --- --- --- --- --- --- SPAC2C4.16c // |rps801|rps8-1|40S ribosomal protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.16310816601603 -1.7092657942078 -1.87124162076567 -1.38748423306008 -8.55054636704994 Max fold change at or above threshold 3 8.55054636704994 Max fold change at or above threshold APAAPA No 4 0 AAPA 3 1 0 No No x = 1
1776047_at SPBC19C2.13c.S1 --- 8.5480290460437 --- --- --- --- 9.76455020904541 11.4156923294067 1.14231598377228 2.40449666976929 0.334473013877869 0.0375977009534836 0.601073980331421 0.303710997104645 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C2.13c /DEF=hypothetical protein --- --- --- --- --- --- SPBC19C2.13c // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.00001054809153 1.16909556354493 -1.1840888358663 -8.5480290460437 -4.06095393344102 Max fold change at or above threshold 2 8.5480290460437 Max fold change at or above threshold AMPPAA No 4 0 APAA 3 1 0 No No x = 1
1775499_at SPCC794.01c.S1 --- 8.54663496573602 --- --- --- --- 15.0980758666992 7.52190065383911 12.7750473022461 8.26556015014648 0.149657994508743 0.466064006090164 0.171387001872063 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC794.01c /DEF=glucose-6-phosphate 1-dehydrogenase (predicted) --- --- --- --- --- --- SPCC794.01c // |||glucose-6-phosphate 1-dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -8.54663496573602 -2.00721553786985 -1.90632590573925 -1.18184109299108 -1.82662464399725 Max fold change at or above threshold 4 8.54663496573602 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772115_at SPAC17C9.08.S1 --- 8.54648968759902 --- --- --- --- 11.347131729126 8.14456558227539 12.2251815795898 1.32769501209259 0.24609400331974 0.303710997104645 0.129638999700546 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17C9.08 /GEN=pnu1 /DEF=endonuclease activity --- --- --- --- --- --- AB050780 // Schizosaccharomyces pombe spNUC1 mRNA for mitochondrial nuclease, complete cds. // gb // 11 // --- /// SPAC17C9.08 // |pnu1|nuc1|endodeoxyribonuclease|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.51435979782632 -1.39321509717107 -1.84064634008811 1.07738077528527 -8.54648968759902 Max fold change at or above threshold 3 8.54648968759902 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769590_at SPAC4F10.11.S1 --- 8.54307616079982 --- --- --- --- 0.270667672157288 2.02088212966919 1.14944899082184 2.3123345375061 0.8447265625 0.696289002895355 0.725830018520355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F10.11 /GEN=spn1 /DEF=septin --- --- --- --- --- --- SPAC4F10.11 // |spn1||septin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.50891732088394 7.46628555069863 -1.84434579295487 4.24671694872331 8.54307616079982 Max fold change at or above threshold 0 8.54307616079982 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774299_at SPBC1683.03c.S1 --- 8.53390763476289 --- --- --- --- 14.486795425415 4.14539623260498 2.5206458568573 2.68238162994385 0.171387001872063 0.696289002895355 0.725830018520355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1683.03c /DEF=membrane transporter --- --- --- --- --- --- SPBC1683.03c // |||membrane transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.53390763476289 -3.49467086197246 -1.37465977398957 -5.74725536552641 -5.40072123358461 Max fold change at or above threshold 4 8.53390763476289 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769720_at YFL047W.S1 GTPase-activating protein (RhoGAP) for Cdc42p and Rho5p 8.53388257124495 59.8705825805664 405.496063232422 RGD2 7264 // small GTPase mediated signal transduction // inferred from curator /// 7264 // small GTPase mediated signal transduction // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 5100 // Rho GTPase activator activity // inferred from direct assay 386.387237548828 74.4643249511719 45.2768402099609 424.604888916016 0.00195312988944352 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL047W /GEN=RGD2 /DB_XREF=GI:16198342 /SEG=NC_001138:+40421,42565 /DEF=specific GTPase activating protein (RhoGAP) /NOTE=Rgd2p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 14562095]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: Rho GTPase activator activity [goid GO:0005100] [evidence IDA] [pmid 11591390]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence IC,IPI] [pmid 11591390] --- --- --- --- --- --- S0001847 // RGD2 SGDID:S0001847, Chr VI from 40421-42565, Verified ORF // sgd // 11 // --- /// GENSCAN00000023202 // cdna:Genscan chromosome:SGD1:VI:40595:42565:1 // ensembl // 11 // --- /// GENEFINDER00000018589 // cdna:GeneFinder chromosome:SGD1:VI:40676:42565:1 // ensembl // 11 // --- /// YFL047W // cdna:known chromosome:SGD1:VI:40421:42565:1 gene:YFL047W // ensembl // 11 // --- --- No cerevisiae_gene -1.20609422979557 -5.18889062382815 -1.25641031747709 -8.53388257124495 1.09891023215372 Max fold change at or above threshold 4 8.53388257124495 Max fold change at or above threshold 0.766563429430314 -0.789081383879436 -0.934647347190987 0.957165301640109 232.683322906494 200.510367102383 0.861730718806005 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771976_at YNL309W.S1 Protein with a role in regulation of MBF-specific transcription at Start, phosphorylated by Cln-Cdc28p kinases in vitro; unphosphorylated form binds Swi6p and binding is required for Stb1p function; expression is cell-cycle regulated 8.523926874303 32.0157117843628 218.232765197754 STB1 82 // G1/S transition of mitotic cell cycle // inferred from genetic interaction /// 82 // G1/S transition of mitotic cell cycle // inferred from expression pattern 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 16580 // Sin3 complex // inferred from physical interaction 16563 // transcriptional activator activity // inferred from direct assay 204.641342163086 24.0078716278076 40.023551940918 231.824188232422 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL309W /GEN=STB1 /DB_XREF=GI:37362686 /SEG=NC_001146:+52661,53923 /DEF=Protein with a role in regulation of MBF-specific transcription at Start, phosphorylated by Cln-Cdc28p kinases in vitro; unphosphorylated form binds Swi6p and binding is required for Stb1p function; expression is cell-cycle regulated /NOTE=Stb1p; go_component: Sin3 complex [goid GO:0016580] [evidence IPI] [pmid 9393435]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: transcriptional activator activity [goid GO:0016563] [evidence IDA] [pmid 12832490]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IEP,IGI] [pmid 10409718] --- --- --- --- --- --- S0005253 // STB1 SGDID:S0005253, Chr XIV from 52661-53923, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020599 // cdna:GeneFinder chromosome:SGD1:XIV:52544:53923:1 // ensembl // 11 // --- /// GENSCAN00000019795 // cdna:Genscan chromosome:SGD1:XIV:52661:53923:1 // ensembl // 11 // --- /// YNL309W // cdna:known chromosome:SGD1:XIV:52661:53923:1 gene:YNL309W // ensembl // 11 // --- --- No cerevisiae_gene -1.15078391583544 -8.523926874303 -1.30835407201746 -5.11302301367889 1.13283164477915 Max fold change at or above threshold 4 8.523926874303 Max fold change at or above threshold 0.734357004116738 -0.933830695634194 -0.785922554234364 0.98539624575182 125.124238491058 108.281262691391 0.865389983565249 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778053_at YBR054W.S1 Putative plasma membrane protein of unknown function, transcriptionally regulated by Haa1p; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and bud 8.52316176470588 3367.42614746094 444.167205810547 YRO2 --- 5739 // mitochondrion // inferred from direct assay /// 5933 // bud // inferred from direct assay --- 413.046875 3214.38696289063 3520.46533203125 475.287536621094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR054W /GEN=YRO2 /DB_XREF=GI:6319528 /SEG=NC_001134:+343061,344095 /DEF=Putative plasma membrane protein of unknown function, transcriptionally regulated by Haa1p; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and bud /NOTE=Yro2p; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000258 // span:35-54,69-91,112-129,139-161,168-190,203-225,238-260 // numtm:7 S0000258 // YRO2 SGDID:S0000258, Chr II from 343099-344133, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022144 // cdna:GeneFinder chromosome:SGD1:II:343099:344133:1 // ensembl // 11 // --- /// YBR054W // cdna:known chromosome:SGD1:II:343099:344133:1 gene:YBR054W // ensembl // 11 // --- --- No cerevisiae_gene -1.10592957203276 7.78213601759032 1.63191495649707 8.52316176470588 1.15068667840931 Max fold change at or above threshold 4 8.52316176470588 Max fold change at or above threshold -0.881950825922355 0.773145159685702 0.953983281496026 -0.845177615259372 1905.79667663574 1692.55445741502 0.888108620486655 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776099_at SPBC713.12.S1 --- 8.51144399207016 --- --- --- --- 9.62714767456055 1.13108277320862 11.3716335296631 1.2130788564682 0.24609400331974 0.432372987270355 0.24609400331974 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC713.12 /DEF=squalene epoxidase --- --- --- --- --- --- SPBC713.12 // |erg1||squalene monooxygenase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.38051615854832 -8.51144399207016 -1.41009705770563 1.18120485049921 -7.93612684223131 Max fold change at or above threshold 2 8.51144399207016 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771425_at SPBC2D10.19c.S1 --- 8.51068795252259 --- --- --- --- 0.375745713710785 3.19785451889038 0.584634184837341 1.69846189022064 0.953857004642487 0.533936023712158 0.665526986122131 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2D10.19c /DEF=hypothetical protein --- --- --- --- --- --- SPBC2D10.19c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 6.36678840482509 8.51068795252259 7.12590532279119 1.55593041651392 4.5202428883273 Max fold change at or above threshold 1 8.51068795252259 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779104_at SPBC11C11.02.S1 --- 8.50521242209362 --- --- --- --- 1.02195620536804 0.737241983413696 0.854018926620483 1.80389785766602 0.665526986122131 0.780517995357513 0.725830018520355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11C11.02 /GEN=imp2 /DEF=involved in cytokinesis, actomyosin ring formation --- --- --- --- --- --- SPBC11C11.02 // |imp2||FCH domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 6.13889153939383 -1.38618829144268 8.50521242209362 -1.1966435093097 1.76514203660652 Max fold change at or above threshold 0 8.50521242209362 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-Scv2-r2-Bs-thr-M_s_at AFFX-Scv2-r2-Bs-thr-M --- 8.49828791687631 --- --- --- --- 8.74267196655273 1.02875685691834 1.31351041793823 1.85935497283936 0.533936023712158 0.7744140625 0.601073980331421 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=thrC, thrB /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 1045-1556 of gb:X04603.1 /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase. --- --- --- --- --- --- AFFX-Scv2-r2-Bs-thr-M // --- // affx // --- // --- --- AFFX_control No -3.65204170464089 -8.49828791687631 -1.82717530206169 -6.6559593644303 -4.70199187043995 Max fold change at or above threshold 1 8.49828791687631 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770033_at SPBC409.11.S1 --- 8.49808412049699 --- --- --- --- 8.16347503662109 0.995441913604736 6.03858757019043 0.985993623733521 0.466064006090164 0.850341975688934 0.567627012729645 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC409.11 /GEN=meu18 /DEF=NLS (predicted) (PMID 11376151) --- --- --- --- --- --- SPBC409.11 // |meu18||NLS |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- AB054302 // gb // 7 // Cross Hyb Matching Probes No No -1.43612563916639 -8.20085524333527 -8.49808412049699 -1.35188484752961 -8.279439988374 Max fold change at or above threshold 2 8.49808412049699 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778803_at SPAPB1A10.15.S1 --- 8.49676288126194 --- --- --- --- 5.13695049285889 4.00654172897339 5.48978614807129 3.53902077674866 0.303710997104645 0.366210997104645 0.366210997104645 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1A10.15 /DEF=involved in sterol metabolism (predicted) --- --- --- --- --- --- SPAPB1A10.15 // |||Arv1-like family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.49676288126194 -1.28214076886082 -1.71756374301256 1.0686858196712 -1.45151747246261 Max fold change at or above threshold 4 8.49676288126194 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1770324_at SPAC6F6.18c.S1 --- 8.49429860247082 --- --- --- --- 5.00927305221558 2.00405859947205 5.44123506546021 3.74449849128723 0.5 0.303710997104645 0.274170011281967 0.0239257998764515 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F6.18c /DEF=sequence orphan --- --- --- --- --- --- SPAC6F6.18c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.49429860247082 -2.49956416121526 -7.4791915441592 1.08623247500025 -1.33776874630107 Max fold change at or above threshold 3 8.49429860247082 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1770579_at SPAC1D4.08.S1 --- 8.48472182591166 --- --- --- --- 8.02342987060547 3.46750807762146 10.5204429626465 1.62168717384338 0.432372987270355 0.5 0.432372987270355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1D4.08 /DEF=CDP-diacylglycerol--inositol 3-phosphatidyltransferase (predicted) --- --- --- --- --- --- SPAC1D4.08 // |||CDP-diacylglycerol--inositol 3-phosphatidyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.03347022453267 -2.31388930926706 -8.48472182591166 1.31121517010936 -4.94758175313801 Max fold change at or above threshold 3 8.48472182591166 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769618_at SPAC323.08.S1 --- 8.48137746822319 --- --- --- --- 0.299799889326096 0.8160400390625 0.996951639652252 0.928050518035889 0.981445014476776 0.850341975688934 0.696289002895355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC323.08 /DEF=involved in tRNA processing (ISS) --- --- --- --- --- --- SPAC323.08 // |||ribonuclease MRP complex subunit |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.48137746822319 2.72194910043774 1.04931302042871 3.32539028581114 3.09556657983432 Max fold change at or above threshold 0 8.48137746822319 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771535_at SPAC3H1.14.S1 --- 8.47710229757247 --- --- --- --- 2.88183307647705 0.537358224391937 0.339954972267151 3.32186937332153 0.334473013877869 0.850341975688934 0.932372987270355 0.018554700538516 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H1.14 /DEF=hypothetical protein --- --- --- --- --- --- SPAC3H1.14 // ||SPAC9G1.01|hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.40414028240524 -5.36296449121639 -3.07874311170656 -8.47710229757247 1.15269319393836 Max fold change at or above threshold 2 8.47710229757247 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1777430_at SPAC3H1.09c.S1 --- 8.47245645185173 --- --- --- --- 2.20914745330811 18.7169055938721 1.65785872936249 6.29246377944946 0.334473013877869 0.0805663987994194 0.24609400331974 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H1.09c /DEF=amino acid transporter (predicted) --- --- --- --- --- --- SPAC3H1.09c // |||amino acid transporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.55271688383002 8.47245645185173 4.46593399667337 -1.33253057946476 2.84836748675457 Max fold change at or above threshold 2 8.47245645185173 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771885_at SPBC902.04.S1 --- 8.46377497733062 --- --- --- --- 3.52917695045471 0.437004446983337 0.41697433590889 3.58859992027283 0.194580003619194 0.932372987270355 0.953857004642487 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC902.04 /DEF=rrm RNA recognition motif --- --- --- --- --- --- SPBC902.04 // |||rrm RNA recognition motif|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.22804569867902 -8.07583761404899 1.00461086114108 -8.46377497733062 1.01683762833441 Max fold change at or above threshold 2 8.46377497733062 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778208_at SPAC1486.08.S1 --- 8.46336861038907 --- --- --- --- 2.78577470779419 1.08005881309509 0.662750005722046 0.32915672659874 0.725830018520355 0.780517995357513 0.901123046875 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1486.08 /DEF=involved in cytochrome c oxidase biogenesis (predicted) --- --- --- --- --- --- SPAC1486.08 // |||mitochondrial inner membrane protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.0702705302615 -2.57928056696383 -6.16677381680355 -4.20335674649927 -8.46336861038907 Max fold change at or above threshold 1 8.46336861038907 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772042_at SPAC139.01c.S1 --- 8.45879057842335 --- --- --- --- 4.85167837142944 1.93516147136688 0.573566436767578 2.88811850547791 0.334473013877869 0.432372987270355 0.753906011581421 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC139.01c /DEF=XP-G family --- --- --- --- --- --- D89176 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1006. // gb // 9 // --- /// SPAC139.01c // ||SPAC955.02c|XP-G family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.45465419344157 -2.5071181104089 -3.22556451580307 -8.45879057842335 -1.67987510284888 Max fold change at or above threshold 2 8.45879057842335 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774487_at SPBPB7E8.02.S1 --- 8.45053433201013 --- --- --- --- 0.909761369228363 7.68796968460083 1.46644937992096 0.769326686859131 0.888427972793579 0.432372987270355 0.665526986122131 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB7E8.02 /DEF=conserved protein (fungal bacterial protazoan) --- --- --- --- --- --- SPBPB7E8.02 // |||conserved protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.27361239860703 8.45053433201013 5.10011312784167 1.61190552767125 -1.182542325345 Max fold change at or above threshold 1 8.45053433201013 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778079_at YGR142W.S1 Cytosolic coiled-coil protein that modulates arginine uptake, interacts with Rhb1p, possible role in mediating pH homeostasis between the vacuole and plasma membrane H(+)-ATPase, may have a role in intracellular protein trafficking 8.42806905884735 7013.91284179688 1057.40704345703 BTN2 6865 // amino acid transport // inferred from mutant phenotype /// 6885 // regulation of pH // inferred from mutant phenotype /// 6885 // regulation of pH // inferred from genetic interaction /// 6886 // intracellular protein transport // inferred from mutant phenotype /// 6886 // intracellular protein transport // inferred from physical interaction 5829 // cytosol // inferred from direct assay --- 1047.97680664063 8832.4208984375 5195.40478515625 1066.83728027344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR142W /GEN=BTN2 /DB_XREF=GI:6321581 /SEG=NC_001139:+772457,773689 /DEF=Gene/protein whose expression is elevated in a btn1 minus/Btn1p lacking yeast strain. /NOTE=Btn2p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 11053386]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: intracellular protein transport [goid GO:0006886] [evidence IMP,IPI] [pmid 12615067]; go_process: regulation of pH [goid GO:0006885] [evidence IGI,IMP] [pmid 11053386] --- --- --- --- --- --- S0003374 // BTN2 SGDID:S0003374, Chr VII from 772459-773691, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021630 // cdna:GeneFinder chromosome:SGD1:VII:772459:773691:1 // ensembl // 11 // --- /// YGR142W // cdna:known chromosome:SGD1:VII:772459:773691:1 gene:YGR142W // ensembl // 11 // --- --- No cerevisiae_gene 3.28717793050365 8.42806905884735 1.23020256432537 4.95755703011266 1.01799703343939 Max fold change at or above threshold 4 8.42806905884735 Max fold change at or above threshold -0.797599072392324 1.28055483620728 0.309608271195658 -0.792564035010609 4035.65994262695 3745.84580072924 0.928186679250022 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780040_at YCR097W.S1 Silenced copy of A1, encoding a homeobox-domain containing corepressor that interacts with Alpha2p to repress haploid-specific gene transcription in diploid cells 8.42550686029207 351.248138427734 62.9543285369873 HMRA1 7532 // regulation of transcription, mating-type specific // inferred from direct assay 5634 // nucleus // inferred from direct assay 3714 // transcription corepressor activity // inferred from direct assay 56.716739654541 477.867279052734 224.628997802734 69.1919174194336 0.00195312988944352 0.000244141003349796 0.00122069998178631 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR097W /GEN=HMRA1 /DB_XREF=GI:6319940 /SEG=NC_001135:+293831,294317 /DEF=Silenced copy of A1, encoding a homeobox-domain containing corepressor that interacts with Alpha2p to repress haploid-specific gene transcription in diploid cells /NOTE=Hmra1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8411150]; go_function: transcription corepressor activity [goid GO:0003714] [evidence IDA] [pmid 1977088]; go_process: regulation of transcription, mating-type specific [goid GO:0007532] [evidence IDA] [pmid 1977088] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 7.99999974612418E-20 --- S0000694 // HMRA1 SGDID:S0000694, Chr III from 293831-293935,293990-294235,294288-294317, intron sequence removed, Verified ORF // sgd // 11 // --- /// YCR097W // cdna:known chromosome:SGD1:III:293831:294317:1 gene:YCR097W // ensembl // 11 // --- --- No cerevisiae_gene -1.94873377450859 8.42550686029207 1.42844573156776 3.96054144104437 1.2199558338663 Max fold change at or above threshold 4 8.42550686029207 Max fold change at or above threshold -0.767241365319668 1.38141177456416 0.0894242849502945 -0.703594694194782 207.101233482361 196.006759574495 0.94642970627787 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769423_at SPBC1861.04c.S1 --- 8.42068670696546 --- --- --- --- 0.306674808263779 0.441970944404602 1.30960083007813 2.58241248130798 0.904784977436066 0.969726979732513 0.567627012729645 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1861.04c /DEF=RNA-binding protein --- --- --- --- --- --- SPBC1861.04c // |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.3575331484537 1.44117134011364 -1.20415088824318 4.27032411789006 8.42068670696546 Max fold change at or above threshold 1 8.42068670696546 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777407_at SPCC965.11c.S1 --- 8.41239656757182 --- --- --- --- 3.81532597541809 2.10693669319153 8.03910446166992 0.453536152839661 0.303710997104645 0.432372987270355 0.334473013877869 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC965.11c /DEF=amino acid transporter (predicted) --- --- --- --- --- --- SPCC965.11c // |||amino acid transporter |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.33911004792523 -1.81084034833469 -5.59707426181072 2.10705573087736 -8.41239656757182 Max fold change at or above threshold 2 8.41239656757182 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778393_at SPAC637.08.S1 --- 8.40386719994833 --- --- --- --- 2.0746214389801 1.20203721523285 17.4348430633545 5.36131000518799 0.432372987270355 0.805419981479645 0.030273400247097 0.111571997404099 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC637.08 /DEF=AAA family ATPase --- --- --- --- --- --- SPAC637.08 // |||AAA family ATPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.82132616407134 -1.72592113845512 1.1277387944943 8.40386719994833 2.58423532334827 Max fold change at or above threshold 2 8.40386719994833 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1778074_at SPCC1442.15c.S1 --- 8.40211984292487 --- --- --- --- 1.72605347633362 6.49457025527954 9.69058799743652 2.58982849121094 0.665526986122131 0.303710997104645 0.24609400331974 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1442.15c /DEF=4 predicted transmembrane helices --- --- --- --- --- --- SPCC1442.15c // |cox18||mitochondrial inner membrane protein Cox18 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.06249073570466 3.7626703600603 8.40211984292487 5.6143034560092 1.5004335188456 Max fold change at or above threshold 3 8.40211984292487 Max fold change at or above threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1774070_at YMR303C.S1 Glucose-repressible alcohol dehydrogenase II, catalyzes the conversion of ethanol to acetaldehyde; involved in the production of certain carboxylate esters; regulated by ADR1 8.3948024037462 7232.32055664063 1078.05770874023 ADH2 6067 // ethanol metabolism // traceable author statement /// 6113 // fermentation // traceable author statement 5737 // cytoplasm // inferred from direct assay 4022 // alcohol dehydrogenase activity // inferred from direct assay 1016.04302978516 8529.48046875 5935.16064453125 1140.07238769531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR303C /GEN=ADH2 /DB_XREF=GI:6323961 /SEG=NC_001145:-873290,874336 /DEF=Glucose-repressible alcohol dehydrogenase II catalyzes activities for the production of certain carboxylate esters. /NOTE=Adh2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: alcohol dehydrogenase activity [goid GO:0004022] [evidence IDA] [pmid 3546317]; go_process: ethanol metabolism [goid GO:0006067] [evidence TAS] [pmid 7900189]; go_process: fermentation [goid GO:0006113] [evidence TAS] --- --- --- --- --- --- S0004918 // ADH2 SGDID:S0004918, Chr XIII from 874336-873290, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018969 // cdna:Genscan chromosome:SGD1:XIII:873290:874336:-1 // ensembl // 11 // --- /// GENEFINDER00000021943 // cdna:GeneFinder chromosome:SGD1:XIII:873290:874336:-1 // ensembl // 11 // --- /// YMR303C // cdna:known chromosome:SGD1:XIII:873290:874336:-1 gene:YMR303C // ensembl // 11 // --- --- No cerevisiae_gene -3.22454219056429 8.3948024037462 1.89689291949485 5.84144614995907 1.12207096970724 Max fold change at or above threshold 4 8.3948024037462 Max fold change at or above threshold -0.846586395391932 1.17968881128582 0.480034893793257 -0.813137309687143 4155.18913269043 3708.0044281269 0.892379217820589 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778874_at SPCC777.04.S1 --- 8.3933488776412 --- --- --- --- 4.49185466766357 4.11714315414429 2.77693295478821 0.535168349742889 0.5 0.274170011281967 0.274170011281967 0.625732421875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC777.04 /DEF=amino acid transporter (predicted) --- --- --- --- --- --- SPCC777.04 // |||amino acid transporter |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.41007708325498 -1.09101250539275 -2.00753649169535 -1.61755963892407 -8.3933488776412 Max fold change at or above threshold 3 8.3933488776412 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769333_at YPL223C.S1 Hydrophilin of unknown function; stress induced (osmotic, ionic, oxidative, heat shock and heavy metals); regulated by the HOG pathway 8.38638579125835 3569.07250976563 6380.2392578125 GRE1 6950 // response to stress // inferred from expression pattern /// 9269 // response to dessication // inferred from expression pattern /// 9269 // response to dessication // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay --- 7399.0224609375 4051.1904296875 3086.95458984375 5361.4560546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL223C /GEN=GRE1 /DB_XREF=GI:6325033 /SEG=NC_001148:-128631,129137 /DEF=Hydrophilin of unknown function; stress induced (osmotic, ionic, oxidative, heat shock and heavy metals); regulated by the HOG pathway /NOTE=Gre1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to dessication [goid GO:0009269] [evidence IEP,ISS] [pmid 10681550]; go_process: response to stress [goid GO:0006950] [evidence IEP] [pmid 10407268] --- --- --- --- --- --- S0006144 // GRE1 SGDID:S0006144, Chr XVI from 129137-128631, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020769 // cdna:GeneFinder chromosome:SGD1:XVI:126738:129137:-1 // ensembl // 10 // --- /// GENSCAN00000017015 // cdna:Genscan chromosome:SGD1:XVI:128631:129137:-1 // ensembl // 11 // --- /// YPL223C // cdna:known chromosome:SGD1:XVI:128631:129137:-1 gene:YPL223C // ensembl // 11 // --- --- No cerevisiae_gene -8.38638579125835 -1.8263822916634 -1.01144210215412 -2.39686793102843 -1.38003974768544 Max fold change at or above threshold 4 8.38638579125835 Max fold change at or above threshold 1.29938705339038 -0.494949512430673 -1.01175071671953 0.207313175759824 4974.65588378906 1865.77707606271 0.375056510369436 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775825_at SPBC215.01.S1 --- 8.38596974574274 --- --- --- --- 4.05306339263916 1.63965380191803 1.02603733539581 2.57660388946533 0.432372987270355 0.780517995357513 0.665526986122131 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC215.01 /DEF=TBC domain protein --- --- --- --- --- --- SPBC215.01 // ||SPBC3B9.20|GTPase activating protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.38596974574274 -2.47190192703971 1.55141101826024 -3.95021043856617 -1.5730254111664 Max fold change at or above threshold 2 8.38596974574274 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776559_at SPAC1002.13c.S1 --- 8.3859097028784 --- --- --- --- 0.730574250221252 1.34242284297943 6.12652969360352 1.47853493690491 0.753906011581421 0.919434010982513 0.303710997104645 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1002.13c /GEN=psu1 /DEF=beta-glucosidase (predicted) --- --- --- --- --- --- SPAC1002.13c // |psu1||beta-glucosidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.27808872022702 1.83748995064209 1.85173013759808 8.3859097028784 2.02379831544451 Max fold change at or above threshold 1 8.3859097028784 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779239_at SPAC23A1.19c.S1 --- 8.38518676925344 --- --- --- --- 6.13266181945801 1.72416865825653 0.731368541717529 1.87415945529938 0.432372987270355 0.65771484375 0.805419981479645 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23A1.19c /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPAC23A1.19c // ||SPAC26H5.01c|DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.07975686442875 -3.55688046531325 -7.12558782866481 -8.38518676925344 -3.2722198754846 Max fold change at or above threshold 1 8.38518676925344 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778502_at SPCC188.09c.S1 --- 8.38432074136587 --- --- --- --- 5.68950271606445 10.7075185775757 5.00978517532349 4.69462203979492 0.366210997104645 0.366210997104645 0.303710997104645 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC188.09c /DEF=localization cell surface (predicted) --- --- --- --- --- --- SPCC188.09c // |||localization cell surface |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.15313389397887 1.88197793584714 -8.38432074136587 -1.13567798158073 -1.21191922754084 Max fold change at or above threshold 4 8.38432074136587 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777221_at SPAC20G8.02.S1 --- 8.37605951801207 --- --- --- --- 3.20729827880859 1.78870606422424 9.19663429260254 3.76702332496643 0.303710997104645 0.334473013877869 0.171387001872063 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20G8.02 /DEF=phospholipase (predicted) --- --- --- --- --- --- SPAC20G8.02 // |||phospholipase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -8.37605951801207 -1.79308291225568 -1.71397566980842 2.86740848313578 1.17451605603884 Max fold change at or above threshold 3 8.37605951801207 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770002_at SPCC1322.14c.S1 --- 8.36680091522021 --- --- --- --- 4.9084267616272 0.910218000411987 3.7070050239563 2.55408477783203 0.398925989866257 0.780517995357513 0.567627012729645 0.423828125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1322.14c /DEF=polyphosphate synthetase (predicted) --- --- --- --- --- --- D89159 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0646. // gb // 11 // --- /// SPCC1322.14c // |||polyphosphate synthetase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.34739039340784 -5.39258371006234 -8.36680091522021 -1.32409498500994 -1.92179476743665 Max fold change at or above threshold 3 8.36680091522021 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774318_at SPCC553.03.S1 --- 8.36041853073229 --- --- --- --- 0.253007054328918 0.597680866718292 0.480884790420532 2.11524486541748 0.991943001747131 0.904784977436066 0.976073980331421 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC553.03 /DEF=AAA family ATPase --- --- --- --- --- --- SPCC553.03 // |||AAA family ATPase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.94648865399503 2.36230909965572 7.46636577761632 1.90067740085762 8.36041853073229 Max fold change at or above threshold 0 8.36041853073229 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779432_at SPBC146.09c.S1 --- 8.35623659170954 --- --- --- --- 3.81981682777405 1.09665596485138 1.00460648536682 3.16435980796814 0.334473013877869 0.904784977436066 0.888427972793579 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC146.09c /DEF=oxidoreductase (predicted) --- --- --- --- --- --- SPBC146.09c // |||oxidoreductase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.35623659170954 -3.48314963872167 -6.68080947119916 -3.8023015811801 -1.20713732305518 Max fold change at or above threshold 2 8.35623659170954 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772335_at SPBC29A10.10c.S1 --- 8.35407773251449 --- --- --- --- 0.644477665424347 1.20767331123352 4.80061531066895 2.84915781021118 0.533936023712158 0.432372987270355 0.171387001872063 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A10.10c /DEF=tRNA-splicing endonuclease positive effector (predicted) --- --- --- --- --- --- SPBC29A10.10c // |||tRNA-splicing endonuclease positive effector |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 8.35407773251449 1.87387922968338 1.20510165001918 7.44884666795714 4.42087905146441 Max fold change at or above threshold 2 8.35407773251449 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771868_at YOR385W.S1 Hypothetical protein 8.35389059668989 7.3744957447052 5.32754111289978 --- --- 5737 // cytoplasm // inferred from direct assay --- 9.43949699401855 8.91196537017822 5.83702611923218 1.21558523178101 0.398925989866257 0.466064006090164 0.601073980331421 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR385W /GEN=FRE5 /DB_XREF=GI:6324961 /SEG=NC_001147:+1065039,1065911 /DEF=Hypothetical ORF /NOTE=Yor385wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005912 // YOR385W SGDID:S0005912, Chr XV from 1065039-1065911, Uncharacterized ORF // sgd // 11 // --- /// YOR385W // cdna:known chromosome:SGD1:XV:1065039:1065911:1 gene:YOR385W // ensembl // 11 // --- --- No cerevisiae_gene -8.35389059668989 -1.05919363484127 -6.56979271829162 -1.61717573319001 -7.76539295413152 Max fold change at or above threshold 3 8.35389059668989 Max fold change at or above threshold 0.818310999130698 0.678538317837175 -0.136185358424384 -1.36066395854349 6.35101842880249 3.77421123325605 0.59426866345398 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771847_at SPBC21D10.09c.S1 --- 8.34373607419509 --- --- --- --- 0.690309226512909 0.972795605659485 0.394950926303864 0.440288573503494 0.601073980331421 0.850341975688934 0.805419981479645 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21D10.09c /DEF=zinc finger protein --- --- --- --- --- --- SPBC21D10.09c // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- U97378 // gb // 4 // Cross Hyb Matching Probes No No 8.34373607419509 1.40921715703201 -1.0564545024985 -1.74783544116011 -1.56785632890705 Max fold change at or above threshold 0 8.34373607419509 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776741_at SPAC20H4.04.S1 --- 8.33890142201719 --- --- --- --- 0.583162784576416 3.1481511592865 3.10468649864197 4.86293697357178 0.696289002895355 0.432372987270355 0.0952147990465164 0.018554700538516 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20H4.04 /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPAC20H4.04 // |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.82518902583115 5.39840888779139 7.11524790654965 5.32387624991721 8.33890142201719 Max fold change at or above threshold 3 8.33890142201719 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1771854_at SPAC18G6.02c.S1 --- 8.33016053284544 --- --- --- --- 4.0571460723877 5.55409288406372 1.51760733127594 1.7334189414978 0.144775390625 0.533936023712158 0.432372987270355 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18G6.02c /GEN=chp1 /DEF=chromodomain protein --- --- --- --- --- --- SPAC18G6.02c // |chp1||chromodomain protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.33016053284544 1.36896547103986 -5.82817988994312 -2.67338328484261 -2.34054559763955 Max fold change at or above threshold 2 8.33016053284544 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771982_at YMR170C.S1 Cytoplasmic aldehyde dehydrogenase, involved in ethanol oxidation and beta-alanine biosynthesis; uses NAD+ as the preferred coenzyme; expression is stress induced and glucose repressed; very similar to Ald3p 8.32835536357318 6.61907529830933 0.641998320817947 ALD2 6081 // aldehyde metabolism // inferred from sequence similarity /// 6598 // polyamine catabolism // inferred from genetic interaction /// 6598 // polyamine catabolism // inferred from mutant phenotype /// 19483 // beta-alanine biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from sequence similarity /// 5737 // cytoplasm // inferred from direct assay 4028 // aldehyde dehydrogenase activity // inferred from sequence similarity 0.953596293926239 7.9418888092041 5.29626178741455 0.330400347709656 0.696289002895355 0.357666015625 0.601073980331421 0.960205078125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR170C /GEN=ALD2 /DB_XREF=GI:6323822 /SEG=NC_001145:-601561,603081 /DEF=Expression induced in response to high osmotic stress. NAD+ is preferred coenzyme. /NOTE=Ald2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytoplasm [goid GO:0005737] [evidence ISS] [pmid 8801420]; go_function: aldehyde dehydrogenase activity [goid GO:0004028] [evidence ISS] [pmid 8801420]; go_process: aldehyde metabolism [goid GO:0006081] [evidence ISS] [pmid 10407263]; go_process: beta-alanine biosynthesis [goid GO:0019483] [evidence IMP] [pmid 12586697]; go_process: polyamine catabolism [goid GO:0006598] [evidence IGI,IMP] [pmid 12586697] --- --- --- --- --- --- S0004780 // ALD2 SGDID:S0004780, Chr XIII from 603081-601561, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018856 // cdna:Genscan chromosome:SGD1:XIII:601561:603081:-1 // ensembl // 11 // --- /// GENEFINDER00000021809 // cdna:GeneFinder chromosome:SGD1:XIII:601561:603081:-1 // ensembl // 11 // --- /// YMR170C // cdna:known chromosome:SGD1:XIII:601561:603081:-1 gene:YMR170C // ensembl // 11 // --- --- No cerevisiae_gene -3.98166244648503 8.32835536357318 1.45857532969416 5.55398738559298 -2.88618429289374 Max fold change at or above threshold 2 8.32835536357318 Max fold change at or above threshold -0.738490403114378 1.18937722283469 0.459525306290905 -0.910412126011215 3.63053680956364 3.62488192716946 0.998442411497033 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779240_at SPCC4B3.17.S1 --- 8.32738632675816 --- --- --- --- 0.890410423278809 4.13198232650757 1.89301872253418 1.37900292873383 0.5 0.334473013877869 0.633789002895355 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4B3.17 /GEN=cbp3 /DEF=ubiquinol cytochrome c reductase assembly protein --- --- --- --- --- --- SPCC4B3.17 // |cbp3||ubiquinol cytochrome c reductase assembly protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 8.32738632675816 4.6405367889699 7.96554591967337 2.12600692112679 1.5487272977509 Max fold change at or above threshold 1 8.32738632675816 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771654_at SPAC16A10.05c.S1 --- 8.32548942733192 --- --- --- --- 0.173465222120285 0.826473653316498 1.44418287277222 0.299921095371246 0.976073980331421 0.870360970497131 0.805419981479645 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16A10.05c /DEF=DASH complex (predicted) --- --- --- --- --- --- SPAC16A10.05c // |dad1||DASH complex subunit Dad1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.04270438054836 4.76449194377073 -1.29404110231648 8.32548942733192 1.72899842230781 Max fold change at or above threshold 0 8.32548942733192 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775438_at SPCC18B5.09c.S1 --- 8.32505111306692 --- --- --- --- 0.560006320476532 4.66208124160767 3.9930305480957 1.37624049186707 0.7744140625 0.274170011281967 0.567627012729645 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18B5.09c /DEF=dubious --- --- --- --- --- --- SPCC18B5.09c // |||dubious|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.63179246520086 8.32505111306692 -1.91859495014645 7.13033121607962 2.45754456966837 Max fold change at or above threshold 2 8.32505111306692 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779645_at YNL112W.S1 Essential ATP-dependent RNA helicase of the DEAD-box protein family, involved in nonsense-mediated mRNA decay and rRNA processing 8.31756428278158 209.322929382324 359.932037353516 DBP2 184 // mRNA catabolism, nonsense-mediated decay // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 3724 // RNA helicase activity // inferred from sequence similarity 326.300354003906 214.237533569336 204.408325195313 393.563720703125 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL112W /GEN=DBP2 /DB_XREF=GI:6324217 /SEG=NC_001146:+413639,416281 /DEF=ATP-dependent RNA helicase of DEAD box family /NOTE=Dbp2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: RNA helicase activity [goid GO:0003724] [evidence ISS] [pmid 7641698]; go_process: mRNA catabolism, nonsense-mediated [goid GO:0000184] [evidence IPI] [pmid 7883168] --- --- --- --- --- --- S0005056 // DBP2 SGDID:S0005056, Chr XIV from 413639-414911,415914-416281, intron sequence removed, Verified ORF // sgd // 11 // --- /// YNL112W // cdna:known chromosome:SGD1:XIV:413639:416281:1 gene:YNL112W // ensembl // 11 // --- GENSCAN00000019943 // ensembl // 6 // Cross Hyb Matching Probes /// GENEFINDER00000020567 // ensembl // 6 // Cross Hyb Matching Probes /// GENEFINDER00000020578 // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene 8.31756428278158 -1.52307743917479 1.03780228783385 -1.59631636183177 1.20613942300048 Max fold change at or above threshold 4 8.31756428278158 Max fold change at or above threshold 0.456561957717833 -0.771182133441739 -0.878869522133061 1.19348969785697 284.62748336792 91.2753897505871 0.320683683355346 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771783_at SPBC216.02.S1 --- 8.31643289854987 --- --- --- --- 0.460964232683182 1.13816785812378 3.83357810974121 0.213886827230453 0.828612983226776 0.725830018520355 0.601073980331421 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC216.02 /DEF=coiled-coil (region) (predicted) --- --- --- --- --- --- SPBC216.02 // |mcp5||meiosis specific coiled-coil protein mcp5|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.03646878307159 2.46910232383699 -1.21677489292425 8.31643289854987 -2.15517822510179 Max fold change at or above threshold 1 8.31643289854987 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773834_at SPCC4G3.12c.S1 --- 8.31464887996385 --- --- --- --- 4.62883186340332 10.8980340957642 9.91053104400635 0.556708037853241 0.366210997104645 0.129638999700546 0.125244140625 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4G3.12c /DEF=zinc finger protein --- --- --- --- --- --- SPCC4G3.12c // |||zinc finger protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.00988982865703 2.35438106575585 1.40250113213021 2.14104364480409 -8.31464887996385 Max fold change at or above threshold 3 8.31464887996385 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Sp-GPD3-5_at AFFX-r2-Sp-GPD3-5 --- 8.31332050206665 --- --- --- --- 11.6233777999878 13.5060214996338 9.26846694946289 1.39816308021545 0.000244141003349796 0.129638999700546 0.00415039015933871 0.533936023712158 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=GPD3 glyceraldehyde 3-phosphate dehydrogenase (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPBC354.12 // |gpd3||glyceraldehyde 3-phosphate dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- AFFX_control No -1.2787565587711 1.16197044714902 -2.18894237024948 -1.2540777092226 -8.31332050206665 Max fold change at or above threshold 3 8.31332050206665 Max fold change at or above threshold PAAAPA No 2 0 PAPA 2 2 0 No No 1 < x = 2
1776791_at YGL205W.S1 Fatty-acyl coenzyme A oxidase, involved in the fatty acid beta-oxidation pathway; localized to the peroxisomal matrix 8.30708556491731 2323.05609130859 347.700546264648 POX1 6635 // fatty acid beta-oxidation // traceable author statement 5782 // peroxisomal matrix // traceable author statement 3997 // acyl-CoA oxidase activity // traceable author statement 342.378204345703 2844.1650390625 1801.94714355469 353.022888183594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL205W /GEN=POX1 /DB_XREF=GI:6321233 /SEG=NC_001139:+108160,110406 /DEF=Fatty-acyl coenzyme A oxidase, involved in the fatty acid beta-oxidation pathway; localized to the peroxisomal matrix /NOTE=Pox1p; go_component: peroxisomal matrix [goid GO:0005782] [evidence TAS]; go_function: acyl-CoA oxidase activity [goid GO:0003997] [evidence TAS]; go_process: fatty acid beta-oxidation [goid GO:0006635] [evidence TAS] --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 5.80000019073486 /// scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 1.39999997615814 --- S0003173 // POX1 SGDID:S0003173, Chr VII from 108162-110408, Verified ORF // sgd // 11 // --- /// GENSCAN00000019195 // cdna:Genscan chromosome:SGD1:VII:108162:110408:1 // ensembl // 11 // --- /// GENEFINDER00000021765 // cdna:GeneFinder chromosome:SGD1:VII:108162:110408:1 // ensembl // 11 // --- /// YGL205W // cdna:known chromosome:SGD1:VII:108162:110408:1 gene:YGL205W // ensembl // 11 // --- --- No cerevisiae_gene -2.85659371465557 8.30708556491731 2.52659650563965 5.26303111787817 1.03109042486578 Max fold change at or above threshold 4 8.30708556491731 Max fold change at or above threshold -0.815763941881055 1.23949009117992 0.383293031004232 -0.807019180303093 1335.37831878662 1217.26404350648 0.911549952834741 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779653_at SPBPB2B2.11.S1 --- 8.30661209358454 --- --- --- --- 3.07550692558289 3.0081148147583 1.91499352455139 5.46906661987305 0.39013671875 0.633789002895355 0.466064006090164 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB2B2.11 /DEF=dtdp-glucose 4,6-dehydratase (predicted) --- --- --- --- --- --- SPBPB2B2.11 // |||dtdp-glucose 4,6-dehydratase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.30661209358454 -1.02240343702772 1.25471961906448 -1.60601426905783 1.77826509652113 Max fold change at or above threshold 3 8.30661209358454 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775242_at SPAC30D11.08c.S1 --- 8.30278284730557 --- --- --- --- 10.556999206543 9.71880912780762 7.508957862854 6.15848636627197 0.432372987270355 0.334473013877869 0.398925989866257 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30D11.08c /DEF=zinc finger protein --- --- --- --- --- --- SPAC30D11.08c // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.22106044047933 -1.08624411362675 -8.30278284730557 -1.40592068824454 -1.71421979016796 Max fold change at or above threshold 4 8.30278284730557 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775315_at SPAC30D11.13.S1 --- 8.3002261101781 --- --- --- --- 8.99842262268066 3.10031414031982 5.62338733673096 1.08411777019501 0.00805663969367743 0.696289002895355 0.432372987270355 0.533936023712158 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30D11.13 /GEN=hus5 /DEF=ubiquitin conjugating enzyme (PMID 7768995) --- --- --- --- --- --- SPAC30D11.13 // |hus5|ubc9|SUMO conjugating enzyme|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.49638825311599 -2.90242285633429 -6.45335099726372 -1.60017834160286 -8.3002261101781 Max fold change at or above threshold 3 8.3002261101781 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1776652_at SPBC16H5.13.S1 --- 8.29736028106597 --- --- --- --- 0.744828045368195 6.18010663986206 1.13346445560455 2.67546701431274 0.919434010982513 0.850341975688934 0.567627012729645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16H5.13 /DEF=WD repeat protein --- --- --- --- --- --- SPBC16H5.13 // |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.95007012276907 8.29736028106597 1.05025495470962 1.52178004393516 3.59205998075726 Max fold change at or above threshold 2 8.29736028106597 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778239_at SPBPB10D8.02c.S1 --- 8.2922208053738 --- --- --- --- 1.36862754821777 8.7277889251709 11.3489618301392 6.99018669128418 0.5 0.303710997104645 0.0676269978284836 0.030273400247097 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB10D8.02c /DEF=arylsulfatase (predicted) --- --- --- --- --- --- SPBPB10D8.02c // |||arylsulfatase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.87898453777062 6.37703730027663 1.69438213795458 8.2922208053738 5.10744263505933 Max fold change at or above threshold 3 8.2922208053738 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1774316_at SPCC2H8.03.S1 --- 8.29104431531871 --- --- --- --- 6.85886478424072 0.827261865139008 5.55647993087769 4.00786733627319 0.018554700538516 0.805419981479645 0.334473013877869 0.194580003619194 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC2H8.03 /DEF=dubious --- --- --- --- --- --- SPCC2H8.03 // |||dubious|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.41932158906671 -8.29104431531871 -1.47400528011423 -1.23439027398004 -1.71135025407767 Max fold change at or above threshold 3 8.29104431531871 Max fold change at or above threshold PPAAAA No 4 0 PAAA 3 1 0 No No x = 1
1775106_at SPAC13D6.04c.S1 --- 8.28611453068464 --- --- --- --- 1.49204790592194 2.70570588111877 0.618917763233185 0.699693262577057 0.633789002895355 0.753906011581421 0.753906011581421 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13D6.04c /DEF=BTB domain --- --- --- --- --- --- SPAC13D6.04c // |btb3||BTB/POZ domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.28611453068464 1.81341756546813 -1.17161479217143 -2.41073692590043 -2.13243143206287 Max fold change at or above threshold 1 8.28611453068464 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779416_at YNL067W-B.S1 --- 8.28597485154723 20.8991794586182 3.92293000221252 --- --- --- --- 3.9676628112793 17.2223987579346 24.5759601593018 3.87819719314575 0.334473013877869 0.0805663987994194 0.018554700538516 0.0561522990465164 A A P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL067W-B /GEN=FKH2 /DB_XREF=GI:33438868 /SEG=NC_001146:+499416,499556 /DEF=Ynl067w-bp /NOTE=go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028810 // YNL067W-B SGDID:S0028810, Chr XIV from 499416-499556, Uncharacterized ORF // sgd // 11 // --- /// YNL067W-B // cdna:known chromosome:SGD1:XIV:499416:499556:1 gene:YNL067W-B // ensembl // 11 // --- --- No cerevisiae_gene -1.63168077321757 4.34069112651776 -8.28597485154723 6.19406469961033 -1.02306886774393 Max fold change at or above threshold 4 8.28597485154723 Max fold change at or above threshold -0.823684168221167 0.469364438046666 1.18673160095436 -0.832411870779864 12.4110547304153 10.250763878794 0.825938173785733 AAAAPM No 4 0 AAPM 2 1 1 No No x = 1
1779826_at SPAC644.15.S1 --- 8.2833661816709 --- --- --- --- 5.22836112976074 8.98265361785889 8.9923095703125 6.40382289886475 0.171387001872063 0.0676269978284836 0.0676269978284836 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC644.15 /GEN=rpp101 /DEF=60S acidic ribosomal protein --- --- --- --- --- --- SPAC644.15 // |rpp101|rpp1-1|60S acidic ribosomal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.2833661816709 1.71806296369393 1.73015963638844 1.7199098048386 1.22482413512201 Max fold change at or above threshold 4 8.2833661816709 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769722_at SPBC557.02c.S1 --- 8.28202430860384 --- --- --- --- 2.09575200080872 17.3570690155029 11.2856159210205 8.2739725112915 0.274170011281967 0.0375977009534836 0.030273400247097 0.0805663987994194 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC557.02c /DEF=hypothetical protein --- --- --- --- --- --- SPBC557.02c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.00632418684354 8.28202430860384 -1.11577825004292 5.38499589486999 3.94797309419183 Max fold change at or above threshold 3 8.28202430860384 Max fold change at or above threshold AAPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1779000_at YHR208W.S1 Mitochondrial branched-chain amino acid aminotransferase, homolog of murine ECA39; highly expressed during logarithmic phase and repressed during stationary phase 8.28182907291581 319.656860351563 2198.86413574219 BAT1 9063 // amino acid catabolism // traceable author statement /// 9082 // branched chain family amino acid biosynthesis // inferred from direct assay /// 9082 // branched chain family amino acid biosynthesis // inferred from mutant phenotype 5759 // mitochondrial matrix // inferred from direct assay 4084 // branched-chain-amino-acid transaminase activity // inferred from direct assay /// 4084 // branched-chain-amino-acid transaminase activity // inferred from sequence similarity 2155.43725585938 260.261016845703 379.052703857422 2242.291015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR208W /GEN=BAT1 /DB_XREF=GI:6322002 /SEG=NC_001140:+517530,518711 /DEF=BAT1 highly expressed during logarithmic phase and is repressed during stationary phase, whereas BAT2 has the opposite pattern of expression. /NOTE=Bat1p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 8798704]; go_function: branched-chain-amino-acid transaminase activity [goid GO:0004084] [evidence IDA,ISS] [pmid 8798704]; go_process: amino acid catabolism [goid GO:0009063] [evidence TAS] [pmid 9748245]; go_process: branched chain family amino acid biosynthesis [goid GO:0009082] [evidence IDA,IMP] [pmid 8798704] --- --- --- --- --- --- S0001251 // BAT1 SGDID:S0001251, Chr VIII from 517531-518712, Verified ORF // sgd // 11 // --- /// GENSCAN00000016730 // cdna:Genscan chromosome:SGD1:VIII:517531:518712:1 // ensembl // 11 // --- /// GENEFINDER00000020294 // cdna:GeneFinder chromosome:SGD1:VIII:517531:518712:1 // ensembl // 11 // --- /// YHR208W // cdna:known chromosome:SGD1:VIII:517531:518712:1 gene:YHR208W // ensembl // 11 // --- --- No cerevisiae_gene 1.37057185617178 -8.28182907291581 -1.31131142192731 -5.68637879092963 1.04029519278723 Max fold change at or above threshold 4 8.28182907291581 Max fold change at or above threshold 0.824735810428919 -0.919361766040019 -0.810039852248179 0.904665807859279 1259.26049804688 1086.62282694676 0.862905513698018 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773638_at SPBC14C8.17c.S1 --- 8.28109180955591 --- --- --- --- 10.5444478988647 7.18099975585938 7.22651529312134 2.52229952812195 0.0239257998764515 0.0461426004767418 0.0375977009534836 0.303710997104645 P P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14C8.17c /DEF=WD repeat protein --- --- --- --- --- --- SPBC14C8.17c // |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.28109180955591 -1.46838159829499 -1.65960944150156 -1.45913313279799 -4.18048997801459 Max fold change at or above threshold 4 8.28109180955591 Max fold change at or above threshold PAPPPA No 4 0 PPPA 1 3 0 No No 2 < x = 3
1774572_at SPBC11C11.10.S1 --- 8.2785736547907 --- --- --- --- 1.14822602272034 0.39548796415329 0.138698533177376 2.4301962852478 0.696289002895355 0.888427972793579 0.8447265625 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11C11.10 /DEF=pseudouridine synthase (predicted) --- --- --- --- --- --- SPBC11C11.10 // ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.42710855190831 -2.90331470688015 -4.887017982158 -8.2785736547907 2.11647901820781 Max fold change at or above threshold 0 8.2785736547907 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776479_at SPCC18.07.S1 --- 8.27779759121079 --- --- --- --- 0.644276440143585 1.07295751571655 0.279226541519165 1.5539116859436 0.850341975688934 0.888427972793579 0.985840022563934 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18.07 /GEN=rpc53 /DEF=localization DNA-directed RNA polymerase III complex (subunit) --- --- --- --- --- --- SPCC18.07 // |rpc53||DNA-directed RNA polymerase III complex |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.67717893778427 1.66536823149614 8.27779759121079 -2.3073610289277 2.41187103721703 Max fold change at or above threshold 0 8.27779759121079 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770468_at SPCC417.11c.S1 --- 8.27447449418141 --- --- --- --- 1.20255434513092 9.95050525665283 4.31028842926025 4.22814130783081 0.366210997104645 0.0676269978284836 0.171387001872063 0.030273400247097 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC417.11c /DEF=aminotransferase (predicted) --- --- --- --- --- --- SPCC417.11c // |||aminotransferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.57451542498496 8.27447449418141 5.55323091149004 3.58427745632652 3.51596692902099 Max fold change at or above threshold 3 8.27447449418141 Max fold change at or above threshold AAAPAP No 4 0 AAAP 3 1 0 No No x = 1
1770392_at SPAC926.09c.S1 --- 8.27041257522407 --- --- --- --- 11.3453130722046 1.37179529666901 14.2731590270996 3.71335101127625 0.171387001872063 0.5 0.432372987270355 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC926.09c /GEN=fas1 /DEF=fatty acid synthase (subunit beta) (predicted) --- --- --- --- --- --- D89148 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0594. // gb // 11 // --- /// SPAC926.09c // |fas1||fatty acid synthase subunit beta Fas1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.68766282331298 -8.27041257522407 -1.86099389277499 1.25806656336951 -3.05527622833192 Max fold change at or above threshold 3 8.27041257522407 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771303_at SPAC823.12.S1 --- 8.26984897290258 --- --- --- --- 1.97989118099213 1.54858183860779 0.239410802721977 3.14317989349365 0.466064006090164 0.567627012729645 0.850341975688934 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC823.12 /DEF=zinc finger protein --- --- --- --- --- --- SPAC823.12 // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.28968955773391 -1.27851892075145 -4.39685220014939 -8.26984897290258 1.58755184308594 Max fold change at or above threshold 1 8.26984897290258 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775326_at SPBC8E4.01c.S1 --- 8.26886078414077 --- --- --- --- 8.72770690917969 5.04958152770996 14.5002555847168 3.9615433216095 0.219482004642487 0.5 0.303710997104645 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8E4.01c /DEF=inorganic phosphate transporter (predicted) --- --- --- --- --- --- SPBC8E4.01c // ||SPBP4G3.01|inorganic phosphate transporter |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.17964252978809 -1.72840201931303 -8.26886078414077 1.66140496416826 -2.20310777912528 Max fold change at or above threshold 4 8.26886078414077 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779352_at SPAC13G7.07.S1 --- 8.26704448789431 --- --- --- --- 5.67970180511475 8.71122360229492 6.17113351821899 0.687029302120209 0.850341975688934 0.5 0.219482004642487 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G7.07 /DEF=sequence orphan --- --- --- --- --- --- SPAC13G7.07 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.72328042844747 1.53374664748248 2.11185541538307 1.08652421024317 -8.26704448789431 Max fold change at or above threshold 3 8.26704448789431 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778066_at SPBC3E7.09.S1 --- 8.26663467687037 --- --- --- --- 4.77278900146484 3.37082719802856 5.13545846939087 0.577355742454529 0.466064006090164 0.725830018520355 0.5 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3E7.09 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC3E7.09 // |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.97066233889734 -1.41591031550244 -1.47474740331075 1.07598690573053 -8.26663467687037 Max fold change at or above threshold 3 8.26663467687037 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771332_at SPCC569.03.S1 --- 8.2660186290741 --- --- --- --- 0.82660186290741 0.448907554149628 1.38330924510956 1.33530116081238 0.828612983226776 0.601073980331421 0.725830018520355 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC569.03 /DEF=B13958 domain --- --- --- --- --- --- SPCC569.03 // |||B13958 domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -8.2660186290741 -1.84136322783263 -2.07068556283532 1.67348914535958 1.61541029694237 Max fold change at or above threshold 0 8.2660186290741 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774815_at SPAC31A2.16.S1 --- 8.26279705532563 --- --- --- --- 0.890998721122742 0.506029546260834 7.36214160919189 0.189888924360275 0.725830018520355 0.850341975688934 0.219482004642487 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31A2.16 /GEN=gef2 /DEF=RhoGEF --- --- --- --- --- --- SPAC31A2.16 // |gef2||RhoGEF|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.18417339879016 -1.76076422356468 -3.15795224288668 8.26279705532563 -4.69221005977291 Max fold change at or above threshold 1 8.26279705532563 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771560_at SPAC8C9.03.S1 --- 8.25597722298476 --- --- --- --- 10.132513999939 10.9775018692017 11.5432748794556 6.600914478302 0.0805663987994194 0.129638999700546 0.303710997104645 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8C9.03 /GEN=cgs1 /DEF=cAMP-dependent protein kinase (regulatory subunit) --- --- --- --- --- --- SPAC8C9.03 // |cgs1||cAMP-dependent protein kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.25597722298476 1.08339370360286 1.18356979309837 1.13923108120306 -1.53501670613151 Max fold change at or above threshold 4 8.25597722298476 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770303_at YBR294W.S1 High affinity sulfate permease; sulfate uptake is mediated by specific sulfate transporters Sul1p and Sul2p, which control the concentration of endogenous activated sulfate intermediates 8.25574079037219 197.754821777344 37.4613494873047 SUL1 8272 // sulfate transport // inferred from genetic interaction /// 8272 // sulfate transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from mutant phenotype 15116 // sulfate transporter activity // inferred from genetic interaction /// 15116 // sulfate transporter activity // inferred from mutant phenotype 26.4457015991211 177.180786132813 218.328857421875 48.4769973754883 0.00122069998178631 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR294W /GEN=SUL1 /DB_XREF=GI:6319771 /SEG=NC_001134:+789192,791771 /DEF=sulfate uptake is mediated by specific sulfate transporters SUL1 and SUL2, which control the concentration of endogenous activated sulfate intermediates. /NOTE=Sul1p; go_component: plasma membrane [goid GO:0005886] [evidence IMP,ISS] [pmid 7616962]; go_function: sulfate transporter activity [goid GO:0015116] [evidence IGI,IMP] [pmid 7616962]; go_process: sulfate transport [goid GO:0008272] [evidence IGI,IMP] [pmid 7616962] --- --- --- --- --- CAA57540.1 // span:118-140,205-227,234-256,290-312,333-355,396-415,428-450,465-487,523-545 // numtm:9 /// S0000498 // span:118-140,205-227,234-256,290-312,333-355,396-415,428-450,465-487,523-545 // numtm:9 S0000498 // SUL1 SGDID:S0000498, Chr II from 789230-791809, Verified ORF // sgd // 11 // --- /// X82013 // S.cerevisiae mRNA for SUL1. // gb // 11 // --- /// GENSCAN00000021373 // cdna:Genscan chromosome:SGD1:II:789230:791809:1 // ensembl // 11 // --- /// GENEFINDER00000022311 // cdna:GeneFinder chromosome:SGD1:II:789230:791809:1 // ensembl // 11 // --- /// YBR294W // cdna:known chromosome:SGD1:II:789230:791809:1 gene:YBR294W // ensembl // 11 // --- --- No cerevisiae_gene 2.03601472005668 6.69979525665906 2.33990106427879 8.25574079037219 1.83307662282249 Max fold change at or above threshold 4 8.25574079037219 Max fold change at or above threshold -0.964816044128859 0.630486991367188 1.06597713114003 -0.731648078378364 117.608085632324 94.4868035600656 0.803403975602985 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774659_at SPBC31F10.13c.S1 --- 8.25369070726102 --- --- --- --- 0.483779072761536 1.07978701591492 0.355345636606216 0.490663379430771 0.753906011581421 0.932372987270355 0.985840022563934 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31F10.13c /GEN=hip1 /DEF=hira protein --- --- --- --- --- --- SPBC31F10.13c // |hip1||hira protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 5.90504980862361 2.23198372296514 8.25369070726102 -1.3614324278242 1.01423026967648 Max fold change at or above threshold 0 8.25369070726102 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769989_at SPBC83.15.S1 --- 8.25311179670973 --- --- --- --- 1.98088538646698 8.60606479644775 0.756511569023132 1.4125452041626 0.780517995357513 0.567627012729645 0.828612983226776 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC83.15 /DEF=WD repeat protein --- --- --- --- --- --- SPBC83.15 // |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.25311179670973 4.34455463967915 2.67233945548473 -2.6184469181679 -1.4023518543899 Max fold change at or above threshold 1 8.25311179670973 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777578_at SPAC19A8.11c.S1 --- 8.25268418263042 --- --- --- --- 0.976126194000244 8.05566120147705 2.41653394699097 0.980614602565765 0.665526986122131 0.274170011281967 0.466064006090164 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19A8.11c /DEF=sequence orphan --- --- --- --- --- --- SPAC19A8.11c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 4.3775544249506 8.25268418263042 3.74973071465034 2.47563682016135 1.00459818473586 Max fold change at or above threshold 1 8.25268418263042 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779749_at SPAC227.07c.S1 --- 8.24739400953475 --- --- --- --- 9.8900785446167 10.6444454193115 4.41091585159302 10.6983070373535 0.194580003619194 0.303710997104645 0.567627012729645 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC227.07c /GEN=pab1 /DEF=protein phosphatase regulatory subunit --- --- --- --- --- --- SPAC227.07c // |pab1||protein phosphatase regulatory subunit|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.24739400953475 1.07627511463045 -5.07913401013905 -2.24218254833514 1.08172113993743 Max fold change at or above threshold 4 8.24739400953475 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774267_at SPBC31E1.05.S1 --- 8.2374741306086 --- --- --- --- 0.593237996101379 4.8867826461792 4.47407722473145 3.95459866523743 0.665526986122131 0.398925989866257 0.49169921875 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31E1.05 /DEF=RNA export mediator --- --- --- --- --- --- SPBC31E1.05 // |||RNA export mediator |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.54203701232403 8.2374741306086 -3.71193851975326 7.54179141277873 6.66612504800117 Max fold change at or above threshold 3 8.2374741306086 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774417_at SPCC18.12c.S1 --- 8.23737171758555 --- --- --- --- 6.4786548614502 4.35864973068237 2.69997429847717 3.82628798484802 0.24609400331974 0.194580003619194 0.303710997104645 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18.12c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC18.12c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -8.23737171758555 -1.48639034145006 1.523468644833 -2.3995246418102 -1.69319583029439 Max fold change at or above threshold 4 8.23737171758555 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1773817_at SPAC56F8.16.S1 --- 8.23218868509761 --- --- --- --- 8.11852931976318 6.5548677444458 6.81720924377441 2.42477822303772 0.129638999700546 0.466064006090164 0.171387001872063 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC56F8.16 /GEN=esc1 /DEF=transcription factor (predicted) --- --- --- --- --- --- X69389 // S.pombe esc1 mRNA for helix-loop-helix protein. // gb // 11 // --- /// SPAC56F8.16 // |esc1||transcription factor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.23218868509761 -1.23854967579511 -1.8265469222691 -1.19088750681625 -3.34815334558409 Max fold change at or above threshold 3 8.23218868509761 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771824_at YPL250C.S1 Protein that interacts with the cytoskeleton and is involved in chromatin organization and nuclear transport, interacts genetically with TCP1 and ICY1; potential Cdc28p substrate 8.21033663829641 5860.455078125 822.307067871094 ICY2 --- --- --- 806.085510253906 6618.2333984375 5102.6767578125 838.528625488281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL250C /GEN=ICY2 /DB_XREF=GI:6325005 /SEG=NC_001148:-74309,74719 /DEF=Protein that interacts with the cytoskeleton and is involved in chromatin organization and nuclear transport, interacts genetically with TCP1 and ICY1; potential Cdc28p substrate /NOTE=Icy2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006171 // ICY2 SGDID:S0006171, Chr XVI from 74719-74309, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016994 // cdna:Genscan chromosome:SGD1:XVI:74309:74719:-1 // ensembl // 11 // --- /// GENEFINDER00000020766 // cdna:GeneFinder chromosome:SGD1:XVI:74309:74719:-1 // ensembl // 11 // --- /// YPL250C // cdna:known chromosome:SGD1:XVI:74309:74719:-1 gene:YPL250C // ensembl // 11 // --- --- No cerevisiae_gene 5.25510253916417 8.21033663829641 1.53824715177402 6.33019288016382 1.04024773404518 Max fold change at or above threshold 4 8.21033663829641 Max fold change at or above threshold -0.852520642603307 1.10187715044004 0.5922547852398 -0.84161129307653 3341.38107299805 2973.88172913 0.890015734260951 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780249_at SPBC56F2.05c.S1 --- 8.20990074789383 --- --- --- --- 9.61784267425537 8.19833469390869 12.3802299499512 8.44595241546631 0.219482004642487 0.219482004642487 0.0461426004767418 0.149657994508743 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC56F2.05c /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPBC56F2.05c // |||transcriptional regulator |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.02355663634219 -1.17314589283618 -8.20990074789383 1.28721485360642 -1.13875170035804 Max fold change at or above threshold 4 8.20990074789383 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
AFFX-r2-Bs-lys-3_at AFFX-r2-Bs-lys-3 --- 8.20909464863483 --- --- --- --- 1.40033757686615 7.04563665390015 7.11429691314697 4.39276218414307 0.466064006090164 0.171387001872063 0.0561522990465164 0.107177734375 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 1008-1263 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). --- --- --- --- --- --- X17013 // Bacillus subtilis /REF=X17013 /DEF=B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 1008-1263 of X17013 /LEN=1108 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-r2-Bs-lys-3 // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 1008-1263 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // --- // --- /// AFFX-r2-Bs-lys-3 // --- // unknown // --- // --- /// AFFX-r2-Bs-lys-3 // --- // unknown // --- // --- /// AFFX-r2-Bs-lys-3 // --- // unknown // --- // --- /// AFFX-r2-Bs-lys-3 // --- // unknown // --- // --- /// AFFX-r2-Bs-lys-3 // --- // gb // --- // --- /// AFFX-r2-Bs-lys-3 // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 1008-1263 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-lys-3 // --- // unknown // --- // --- /// AFFX-r2-Bs-lys-3 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-3 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-lys-3 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-3 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-3 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-3 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-3 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-3 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-3 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-3 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-3 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-3 // --- // affx // --- // --- /// AFFX-r2-Bs-lys-3 // --- // affx // --- // --- 50812173 // gb // 10 // Negative Strand Matching Probes AFFX_control No 2.87289011050846 5.031384410656 -8.20909464863483 5.08041563025698 3.13693087774859 Max fold change at or above threshold 3 8.20909464863483 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1770822_at SPAC30.03c.S1 --- 8.20731462322203 --- --- --- --- 0.727197825908661 5.06999397277832 5.96834135055542 1.65984714031219 0.753906011581421 0.753906011581421 0.35888671875 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30.03c /DEF=translin-like protein --- --- --- --- --- --- SPAC30.03c // |||translin-like protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.47400899400058 6.97195975035153 5.05973801582003 8.20731462322203 2.28252489374285 Max fold change at or above threshold 2 8.20731462322203 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779449_at SPBC18H10.03.S1 --- 8.20517975846236 --- --- --- --- 0.72050416469574 0.631309568881989 5.91186618804932 2.82925653457642 0.725830018520355 0.943848013877869 0.633789002895355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18H10.03 /GEN=tif35 /DEF=translation initiation factor --- --- --- --- --- --- AB011823 // Schizosaccharomyces pombe mRNA for translation initiation factor 3, partial cds. // gb // 11 // --- /// SPBC18H10.03 // |tif35||eukaryotic translation initiation factor eIF3g|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- D89144 // gb // 8 // Cross Hyb Matching Probes No No 2.67799614396163 -1.14128503702504 4.860629510755 8.20517975846236 3.92677332513571 Max fold change at or above threshold 2 8.20517975846236 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779600_at SPAC24C9.10c.S1 --- 8.19944068469032 --- --- --- --- 9.53725528717041 1.16315925121307 7.2519474029541 5.12145280838013 0.398925989866257 0.850341975688934 0.366210997104645 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24C9.10c /GEN=mrp4 /DEF=mitochondrial ribosomal protein subunit s2 --- --- --- --- --- --- SPAC24C9.10c // |mrp4||mitochondrial ribosomal protein subunit S2|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.06390208115733 -8.19944068469032 -2.55851786878463 -1.31513023429891 -1.86221676622008 Max fold change at or above threshold 3 8.19944068469032 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779891_at SPCC1393.08.S1 --- 8.19563743181716 --- --- --- --- 0.399569630622864 0.49689707159996 1.17048478126526 0.579339444637299 0.850341975688934 0.99975597858429 0.828612983226776 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1393.08 /DEF=zinc finger protein --- --- --- --- --- --- SPCC1393.08 // |||zinc finger protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.54354647143817 1.24358067660292 8.19563743181716 2.92936372426669 1.44990860224838 Max fold change at or above threshold 0 8.19563743181716 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778830_at YAR050W.S1 Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation /// Lectin-like protein involved in flocculation, cell wall protein that binds to mannose chains on the surface of other cells, confers floc-forming ability that is chymotrypsin sensitive and heat resistant; similar to Flo5p 8.18930398358451 1.53732831031084 0.379327137023211 FLO9 /// FLO1 501 // flocculation (sensu Saccharomyces) // inferred from expression pattern /// 501 // flocculation (sensu Saccharomyces) // inferred from sequence similarity /// 501 // flocculation (sensu Saccharomyces) // inferred from mutant phenotype 9277 // cell wall (sensu Fungi) // inferred from sequence similarity /// 9277 // cell wall (sensu Fungi) // inferred from direct assay 5537 // mannose binding // inferred from sequence similarity /// 5537 // mannose binding // inferred from mutant phenotype 0.691487491130829 0.230473890900612 2.84418272972107 0.0671667829155922 0.567627012729645 0.696289002895355 0.194580003619194 0.592041015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR050W /GEN=FLO1 /DB_XREF=GI:6319341 /SEG=NC_001133:+203396,208009 /DEF=Lectin-like protein involved in flocculation, cell wall protein that binds to mannose chains on the surface of other cells, confers floc-forming ability that is chymotrypsin sensitive and heat resistant; similar to Flo5p /NOTE=Flo1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 11956747]; go_function: mannose binding [goid GO:0005537] [evidence IMP] [pmid 9851992]; go_process: flocculation (sensu Saccharomyces) [goid GO:0000501] [evidence IMP] [pmid 7483845] --- --- --- --- --- S0000059 // span:7-29 // numtm:1 /// S0000084 // span:7-26 // numtm:1 S0000084 // FLO1 SGDID:S0000084, Chr I from 203394-208007, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018241 // cdna:GeneFinder chromosome:SGD1:I:203394:208007:1 // ensembl // 11 // --- /// GENSCAN00000020397 // cdna:Genscan chromosome:SGD1:I:203394:208007:1 // ensembl // 11 // --- /// YAR050W // cdna:known chromosome:SGD1:I:203394:208007:1 gene:YAR050W // ensembl // 11 // --- --- No cerevisiae_gene 8.18930398358451 -3.00028557867764 3.30830191785616 4.1131369203365 -6.91487491130829 Max fold change at or above threshold 1 8.18930398358451 Max fold change at or above threshold -0.207701445306902 -0.566542352331541 1.46790012388236 -0.693656326243919 0.958327723667026 1.28472978193248 1.34059544580061 APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779429_at SPAC31A2.06.S1 --- 8.18381916350605 --- --- --- --- 0.735718309879303 3.6594181060791 6.02098560333252 1.98108053207397 0.9296875 0.398925989866257 0.32666015625 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31A2.06 /DEF=sequence orphan --- --- --- --- --- --- SPAC31A2.06 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.19625977200781 4.97393915162916 1.25946454373444 8.18381916350605 2.69271609184088 Max fold change at or above threshold 2 8.18381916350605 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772280_at SPAC1A6.01c.S1 --- 8.18048213758653 --- --- --- --- 1.15269684791565 9.42961597442627 5.68509340286255 3.64229536056519 0.567627012729645 0.303710997104645 0.219482004642487 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1A6.01c /DEF=zinc finger protein --- --- --- --- --- --- SPAC1A6.01c // ||SPAC23C4.20c|zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.40014159955373 8.18048213758653 5.92473712764705 4.9319935359783 3.15980334912108 Max fold change at or above threshold 3 8.18048213758653 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775681_at SPBC646.08c.S1 --- 8.17739030711773 --- --- --- --- 0.321511715650558 1.75249254703522 0.678404808044434 2.62912678718567 0.904784977436066 0.725830018520355 0.466064006090164 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC646.08c /DEF=oxysterol binding protein (predicted) --- --- --- --- --- --- SPBC646.08c // |||oxysterol binding protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 6.20661220378707 5.450789074635 1.08197787144646 2.11004692837312 8.17739030711773 Max fold change at or above threshold 1 8.17739030711773 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774918_at SPBC27.01c.S1 --- 8.17692251638386 --- --- --- --- 0.588111460208893 2.66145825386047 1.18477392196655 0.405587434768677 0.962401986122131 0.888427972793579 0.962401986122131 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC27.01c /DEF=hypothetical protein --- --- --- --- --- --- SPBC27.01c // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 8.17692251638386 4.52543171478948 2.06584781216906 2.01453976350968 -1.45002386610995 Max fold change at or above threshold 1 8.17692251638386 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778725_at SPBC1539.01c.S1 --- 8.17311789477029 --- --- --- --- 6.34769010543823 5.74224376678467 3.15501356124878 0.776654660701752 0.334473013877869 0.149657994508743 0.466064006090164 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1539.01c /DEF=hypothetical protein --- --- --- --- --- --- SPBC1539.01c // |||mitochondrial ribosomal protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -5.27436747152641 -1.10543724077959 -4.00793001093203 -2.01193750271101 -8.17311789477029 Max fold change at or above threshold 3 8.17311789477029 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778832_at YIR042C.S1 Hypothetical protein 8.16710607533399 0.511945635080338 2.93213200569153 --- --- --- --- 3.42195391654968 0.418992221355438 0.604899048805237 2.44231009483337 0.432372987270355 0.601073980331421 0.696289002895355 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR042C /GEN=YPS6 /DB_XREF=GI:6322233 /SEG=NC_001141:-435270,435980 /DEF=Hypothetical ORF /NOTE=Yir042cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001481 // YIR042C SGDID:S0001481, Chr IX from 435980-435270, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016509 // cdna:Genscan chromosome:SGD1:IX:435270:435980:-1 // ensembl // 11 // --- /// YIR042C // cdna:known chromosome:SGD1:IX:435270:435980:-1 gene:YIR042C // ensembl // 11 // --- --- No cerevisiae_gene -1.34821167484505 -8.16710607533399 -1.15316872198521 -5.65706612253489 -1.40111361116212 Max fold change at or above threshold 1 8.16710607533399 Max fold change at or above threshold 1.16801771565068 -0.895327958096667 -0.767590714976813 0.494900957422797 1.72203882038593 1.45538468585364 0.845152077075396 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776920_at SPBC1703.03c.S1 --- 8.16167748171096 --- --- --- --- 14.0870685577393 6.90924882888794 13.5160064697266 7.5120153427124 0.24609400331974 0.533936023712158 0.171387001872063 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1703.03c /DEF=conserved yeast protein --- --- --- --- --- --- SPBC1703.03c // |||conserved yeast protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -2.54060390451547 -2.03887121546998 -8.16167748171096 -1.04225080013773 -1.87527153700578 Max fold change at or above threshold 4 8.16167748171096 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779194_at SPCC1281.03c.S1 --- 8.1610599417202 --- --- --- --- 1.39177525043488 6.6312460899353 0.842928767204285 1.1970282793045 0.567627012729645 0.398925989866257 0.828612983226776 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1281.03c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC1281.03c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 8.1610599417202 4.7645954961933 -1.48968786948943 -1.65111846289329 -1.16269203869062 Max fold change at or above threshold 1 8.1610599417202 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772996_at SPAP27G11.05c.S1 --- 8.15703676281006 --- --- --- --- 0.42698210477829 1.78397917747498 3.48290872573853 1.16612195968628 0.780517995357513 0.274170011281967 0.219482004642487 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP27G11.05c /GEN=vps41 /DEF=WD repeat protein --- --- --- --- --- --- SPAP27G11.05c // |vps41||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.07368038953637 4.17811228506006 -1.76120088443935 8.15703676281006 2.73107923408591 Max fold change at or above threshold 1 8.15703676281006 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776138_at SPAC17G8.01c.S1 --- 8.1529465579155 --- --- --- --- 0.671072602272034 2.6166660785675 4.81787300109863 5.47121906280518 0.850341975688934 0.633789002895355 0.398925989866257 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G8.01c /DEF=tRNA ligase (predicted) --- --- --- --- --- --- SPAC17G8.01c // ||SPAC6C3.10c|tRNA ligase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.95193756311769 3.89922948680713 7.61372410564957 7.17936179302639 8.1529465579155 Max fold change at or above threshold 3 8.1529465579155 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777565_at SPBC13G1.15c.S1 --- 8.14017326173698 --- --- --- --- 3.07023906707764 0.965398252010345 4.07476854324341 1.10896778106689 0.665526986122131 0.5 0.0461426004767418 0.567627012729645 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13G1.15c /DEF=dubious --- --- --- --- --- --- SPBC13G1.15c // |||dubious|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.76596775340834 -3.18028239711867 -8.14017326173698 1.32718282004076 -2.76855569611218 Max fold change at or above threshold 2 8.14017326173698 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1769347_at SPCC1235.01.S1 --- 8.13771798578516 --- --- --- --- 0.763559997081757 2.14429974555969 6.21363592147827 2.6443018913269 0.71826171875 0.149169921875 0.129638999700546 0.2392578125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1235.01 /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPCC1235.01 // ||SPCC320.02c|glycoprotein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.46664388831865 2.80829241153933 7.28917003521589 8.13771798578516 3.46312261175695 Max fold change at or above threshold 2 8.13771798578516 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778699_at SPBP4H10.14c.S1 --- 8.13552248092199 --- --- --- --- 3.56178379058838 6.82140636444092 2.55283045768738 1.30400109291077 0.633789002895355 0.533936023712158 0.665526986122131 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP4H10.14c /DEF=sequence orphan --- --- --- --- --- --- SPBP4H10.14c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.81568290780927 1.91516576117442 -8.13552248092199 -1.3952292757487 -2.73142699799264 Max fold change at or above threshold 3 8.13552248092199 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779430_at SPAC2F3.10.S1 --- 8.12861204951491 --- --- --- --- 13.9411087036133 13.4114608764648 8.96053123474121 12.2011880874634 0.00805663969367743 0.0561522990465164 0.00195312988944352 0.000244141003349796 P M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F3.10 /DEF=GARP complex (predicted) --- --- --- --- --- --- SPAC2F3.10 // |||GARP complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -8.12861204951491 -1.03949218001134 -1.32525469223344 -1.55583506584539 -1.1426025567082 Max fold change at or above threshold 4 8.12861204951491 Max fold change at or above threshold PAMPPP No 2 0 PMPP 0 3 1 No No 2 < x = 3
1776059_at SPBC29A10.07.S1 --- 8.12829081969848 --- --- --- --- 0.490164577960968 0.312108933925629 1.24225807189941 0.503965675830841 0.850341975688934 0.888427972793579 0.533936023712158 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A10.07 /DEF=nucleoporin --- --- --- --- --- --- SPBC29A10.07 // |||nucleoporin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 8.12829081969848 -1.57049198110352 1.79412597674716 2.53436932767985 1.02815604898927 Max fold change at or above threshold 0 8.12829081969848 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772486_at SPBC1A4.09.S1 --- 8.12673079924284 --- --- --- --- 0.976970076560974 2.0336925983429 7.93957281112671 1.75489389896393 0.525390625 0.601073980331421 0.036376953125 0.633789002895355 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1A4.09 /DEF=conserved protein --- --- --- --- --- --- SPBC1A4.09 // |||conserved protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.54747036118593 2.08163243392437 1.57599324695906 8.12673079924284 1.79626166764628 Max fold change at or above threshold 1 8.12673079924284 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1769849_at SPAC26A3.03c.S1 --- 8.11854256195642 --- --- --- --- 4.12422943115234 2.88376092910767 0.878221571445465 0.508001208305359 0.45751953125 0.398925989866257 0.601073980331421 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26A3.03c /DEF=hypothetical protein --- --- --- --- --- --- SPAC26A3.03c // |rmi1||RecQ mediated genome instability protein Rmi1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- AF053340 // gb // 1 // Negative Strand Matching Probes No No -2.31017721363461 -1.43015649789961 -1.53073153180386 -4.69611492731188 -8.11854256195642 Max fold change at or above threshold 2 8.11854256195642 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773795_at SPBC13E7.08c.S1 --- 8.11847231926251 --- --- --- --- 8.07271099090576 3.57635092735291 3.4507200717926 0.994363307952881 0.171387001872063 0.274170011281967 0.274170011281967 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13E7.08c /DEF=proteasome interacting protein (predicted) --- --- --- --- --- --- SPBC13E7.08c // |||RNA polymerase II associated Paf1 complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.81683578696429 -2.25724800359033 -2.52672540473839 -2.33942795212366 -8.11847231926251 Max fold change at or above threshold 3 8.11847231926251 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774029_at SPBC649.05.S1 --- 8.1095835893454 --- --- --- --- 9.52216911315918 9.68451690673828 5.05609846115112 4.71437549591064 0.2666015625 0.398925989866257 0.5 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC649.05 /GEN=cut12 /DEF=localization spindle pole body (PMID 9531532) --- --- --- --- --- --- SPBC649.05 // |cut12|stf1|spindle pole body componet Cut12 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.65509565291242 1.0170494549771 -8.1095835893454 -1.88330373435633 -2.01981558775259 Max fold change at or above threshold 4 8.1095835893454 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779707_at SPBC215.04.S1 --- 8.10921633218164 --- --- --- --- 0.924397468566895 0.776268005371094 7.49613904953003 3.83295559883118 0.870360970497131 0.870360970497131 0.10693359375 0.14404296875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC215.04 /GEN=git11 /DEF=heterotrimeric G protein (gamma subunit) (PMID 11238401) --- --- --- --- --- --- SPBC215.04 // |git11||heterotrimeric G protein gamma subunit Git11 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.23175953599553 -1.19082257953551 5.66858591913142 8.10921633218164 4.14643671057804 Max fold change at or above threshold 2 8.10921633218164 Max fold change at or above threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1771024_at SPBC15D4.11c.S1 --- 8.1086625502269 --- --- --- --- 0.640792489051819 3.01045775413513 0.622951567173004 0.647646009922028 0.780517995357513 0.601073980331421 0.805419981479645 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC15D4.11c /DEF=sequence orphan --- --- --- --- --- --- SPBC15D4.11c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 8.1086625502269 4.69802284759877 1.56365391173089 -1.02863934022958 1.01069538265086 Max fold change at or above threshold 1 8.1086625502269 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769372_at SPAC1039.08.S1 --- 8.10641237310606 --- --- --- --- 0.679902374744415 5.51156902313232 3.88301658630371 0.963950932025909 0.828612983226776 0.567627012729645 0.334473013877869 0.6884765625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1039.08 /DEF=serine acetyltransferase (predicted) --- --- --- --- --- --- SPAC1039.08 // |||serine acetyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.54402001110033 8.10641237310606 -1.25636342108814 5.71113843772555 1.41777844560151 Max fold change at or above threshold 2 8.10641237310606 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769990_at SPBC28E12.02.S1 --- 8.09988612728638 --- --- --- --- 3.49799847602844 0.621109545230865 2.4972460269928 0.431857734918594 0.274170011281967 0.79931640625 0.149657994508743 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC28E12.02 /DEF=hypothetical protein --- --- --- --- --- --- SPBC28E12.02 // ||SPBC9B6.13|KH domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.0649615042427 -5.63185432084809 1.89576127978351 -1.40074243315175 -8.09988612728638 Max fold change at or above threshold 1 8.09988612728638 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778887_at SPAC227.14.S1 --- 8.09733637086054 --- --- --- --- 4.81569957733154 0.594726383686066 2.71984052658081 0.873697340488434 0.366210997104645 0.753906011581421 0.533936023712158 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC227.14 /DEF=conserved fungal protein --- --- --- --- --- --- SPAC227.14 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.09871437658639 -8.09733637086054 -1.5338387933295 -1.77058159486486 -5.51186246559863 Max fold change at or above threshold 2 8.09733637086054 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776052_at SPAC1B9.02c.S1 --- 8.09687962290082 --- --- --- --- 0.41760328412056 0.464711606502533 1.54005134105682 0.438949048519135 0.932372987270355 0.932372987270355 0.325927734375 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B9.02c /GEN=sck1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPAC1B9.02c // |sck1||serine/threonine protein kinase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.05144521215112 1.11280639825709 8.09687962290082 3.68783340461523 1.05111493422167 Max fold change at or above threshold 0 8.09687962290082 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771519_at YAR027W.S1 Putative integral membrane protein of unknown function; interacts with Ulp1p at the nuclear periphery; member of DUP240 gene family 8.09374421948682 3.37764537334442 1.59845796227455 UIP3 --- 5635 // nuclear membrane // inferred from direct assay --- 2.84536480903625 5.32701301574707 1.42827773094177 0.351551115512848 0.24609400331974 0.219482004642487 0.696289002895355 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR027W /GEN=UIP3 /DB_XREF=GI:6319331 /SEG=NC_001133:+183766,184473 /DEF=Putative integral membrane protein of unknown function; interacts with Ulp1p at the nuclear periphery; member of DUP240 gene family /NOTE=Uip3p; go_component: nuclear membrane [goid GO:0005635] [evidence IPI] [pmid 11056382]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000075 // span:51-68,75-97 // numtm:2 S0000075 // UIP3 SGDID:S0000075, Chr I from 183764-184471, Verified ORF // sgd // 11 // --- /// GENSCAN00000020391 // cdna:Genscan chromosome:SGD1:I:183764:184471:1 // ensembl // 11 // --- /// YAR027W // cdna:known chromosome:SGD1:I:183764:184471:1 gene:YAR027W // ensembl // 11 // --- --- No cerevisiae_gene -7.52489827650537 1.87217224266978 -2.69659845592648 -1.99216493220831 -8.09374421948682 Max fold change at or above threshold 2 8.09374421948682 Max fold change at or above threshold 0.166146459753002 1.32008404649211 -0.492782569217976 -0.993447937027141 2.48805166780949 2.15059136233152 0.864367645638537 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779541_at YCL036W.S1 Protein of unknown function, identified as a high-copy suppressor of a dbp5 mutation 8.09329612712349 40.004789352417 278.924468994141 GFD2 --- --- --- 269.196105957031 33.2616157531738 46.7479629516602 288.65283203125 0.000244141003349796 0.0107421996071935 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL036W /GEN=GFD2 /DB_XREF=GI:6319813 /SEG=NC_001135:+59026,60726 /DEF=Protein of unknown function, identified as a high-copy suppressor of a dbp5 mutation /NOTE=Gfd2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000541 // GFD2 SGDID:S0000541, Chr III from 59026-60726, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022438 // cdna:Genscan chromosome:SGD1:III:59041:60726:1 // ensembl // 11 // --- /// GENEFINDER00000023355 // cdna:GeneFinder chromosome:SGD1:III:59041:60726:1 // ensembl // 11 // --- /// YCL036W // cdna:known chromosome:SGD1:III:59026:60726:1 gene:YCL036W // ensembl // 11 // --- --- No cerevisiae_gene 1.03043673644017 -8.09329612712349 -1.61235447415573 -5.75845638954138 1.07227714533629 Max fold change at or above threshold 4 8.09329612712349 Max fold change at or above threshold 0.793554106495584 -0.912672666832005 -0.815142345408603 0.934260905745024 159.464629173279 138.278506639374 0.867142182917047 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1775225_at SPACUNK4.09.S1 --- 8.0841853235632 --- --- --- --- 0.422912746667862 3.41890501976013 0.308677852153778 0.468652725219727 0.780517995357513 0.398925989866257 0.981445014476776 0.634033203125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPACUNK4.09 /DEF=hypothetical protein --- --- --- --- --- --- SPACUNK4.09 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.38702375112269 8.0841853235632 1.4629371829811 -1.37007803999224 1.10815464634786 Max fold change at or above threshold 1 8.0841853235632 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769438_at SPBC29A10.02.S1 --- 8.08322821618434 --- --- --- --- 4.90313291549683 0.968474566936493 5.43466758728027 3.89431667327881 0.633789002895355 0.633789002895355 0.5 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A10.02 /DEF=single-strand polynucleotide binding protein (predicted) --- --- --- --- --- --- SPBC29A10.02 // ||SPBC365.18|RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.36805842160774 -5.06273792094155 -8.08322821618434 1.10840715129371 -1.25904833295661 Max fold change at or above threshold 3 8.08322821618434 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770025_at SPBC1105.16c.S1 --- 8.08025240898132 --- --- --- --- 0.808025240898132 0.349254012107849 1.62190270423889 0.172847136855125 0.725830018520355 0.780517995357513 0.567627012729645 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1105.16c /DEF=RNase P subunit (predicted) --- --- --- --- --- --- SPBC1105.16c // |||RNase P subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.22287384739903 -2.3135746845726 -8.08025240898132 2.00724262330731 -4.67479679212385 Max fold change at or above threshold 0 8.08025240898132 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777213_at SPBC1198.04c.S1 --- 8.0769366578937 --- --- --- --- 5.40178251266479 11.0332689285278 17.7676696777344 7.51610898971558 0.239501953125 0.0461426004767418 0.014160200022161 0.149657994508743 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1198.04c /GEN=zas1 /DEF=zinc finger protein --- --- --- --- --- --- AF199436 // Schizosaccharomyces pombe C2H2 zinc finger protein Zas1B (zas1) mRNA, complete cds. // gb // 11 // --- /// AF199437 // Schizosaccharomyces pombe C2H2 zinc finger protein Zas1A (zas1) mRNA, complete cds. // gb // 11 // --- /// SPBC1198.04c // |zas1||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -8.0769366578937 2.04252372298583 1.16804534531436 3.28922344357201 1.39141273683152 Max fold change at or above threshold 4 8.0769366578937 Max fold change at or above threshold AAPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1772109_at SPAC4F10.12.S1 --- 8.07397466961169 --- --- --- --- 0.788030505180359 4.55232810974121 6.36253833770752 1.10306203365326 0.932372987270355 0.71875 0.725830018520355 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F10.12 /DEF=sequence orphan --- --- --- --- --- --- SPAC4F10.12 // |fta1|sma1|kinetochore associated protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.65819345315218 5.77684249507486 7.78663391866157 8.07397466961169 1.39977072765831 Max fold change at or above threshold 2 8.07397466961169 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778768_at SPAC24B11.12c.S1 --- 8.06181256615449 --- --- --- --- 1.35002338886261 10.8836355209351 6.88808155059814 5.36618947982788 0.805419981479645 0.432372987270355 0.5 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24B11.12c /DEF=P-type ATPase (PMID 12707717) --- --- --- --- --- --- SPAC24B11.12c // |||P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 7.96327923003083 8.06181256615449 2.40783599417103 5.102194234132 3.97488630500608 Max fold change at or above threshold 3 8.06181256615449 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775946_at SPAC9.02c.S1 --- 8.0569917608678 --- --- --- --- 1.23339629173279 9.93746376037598 1.27017116546631 0.978961408138275 0.943848013877869 0.274170011281967 0.55908203125 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9.02c /DEF=N-acetyltransferase --- --- --- --- --- --- SPAC9.02c // |||N-acetyltransferase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.54043339176566 8.0569917608678 2.36526651871294 1.02981594316443 -1.2599028740861 Max fold change at or above threshold 1 8.0569917608678 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769817_at SPAC631.01c.S1 --- 8.05640933668671 --- --- --- --- 0.370231509208679 1.13589465618134 2.98273658752441 0.417761623859406 0.828612983226776 0.805419981479645 0.601073980331421 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC631.01c /DEF=F-actin capping protein (beta subunit) (predicted) --- --- --- --- --- --- SPAC631.01c // |||F-actin capping protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.26949535487182 3.06806586670367 1.86911035644794 8.05640933668671 1.12837944223687 Max fold change at or above threshold 1 8.05640933668671 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773437_at SPAC4F8.11.S1 --- 8.05388579826653 --- --- --- --- 0.272581160068512 0.260463088750839 0.440002679824829 0.166385471820831 0.780517995357513 0.989257991313934 0.919434010982513 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F8.11 /DEF=WD repeat protein --- --- --- --- --- --- SPAC4F8.11 // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 8.05388579826653 -1.04652510025812 -1.04171765361917 1.61420796548902 -1.63825096677933 Max fold change at or above threshold 0 8.05388579826653 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777492_at SPCC285.14.S1 --- 8.04914878268711 --- --- --- --- 8.51297950744629 6.62794208526611 5.53035449981689 2.2185480594635 0.149657994508743 0.24609400331974 0.219482004642487 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC285.14 /DEF=TRAPP (predicted) --- --- --- --- --- --- SPCC285.14 // |||TRAPP |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- D85030 // gb // 3 // Negative Strand Matching Probes No No -8.04914878268711 -1.28440764839672 -1.35008231844059 -1.53931895463991 -3.83718507748033 Max fold change at or above threshold 3 8.04914878268711 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1779622_at SPBC21C3.10c.S1 --- 8.04408685713284 --- --- --- --- 1.31321203708649 7.47117519378662 5.86126899719238 3.27469491958618 0.533936023712158 0.0805663987994194 0.171387001872063 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21C3.10c /DEF=5-amino-6-(5-phosphoribosylamino) uracil reductase activity --- --- --- --- --- --- SPBC21C3.10c // |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.81556133401005 5.68923752051671 -8.04408685713284 4.46330739565584 2.49365283526602 Max fold change at or above threshold 3 8.04408685713284 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770561_at SPAC1751.01c.S1 --- 8.04206213147213 --- --- --- --- 1.20631647109985 3.27996230125427 9.70127201080322 7.8561224937439 0.870360970497131 0.601073980331421 0.194580003619194 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1751.01c /GEN=gti1 /DEF=gluconate transporter activity --- --- --- --- --- --- SPAC1751.01c // |gti1||gluconate transporter inducer Gti1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.301802288278 2.71898990010787 4.82682821645257 8.04206213147213 6.51248878876794 Max fold change at or above threshold 3 8.04206213147213 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775622_at SPBPB8B6.02c.S1 --- 8.03863454401065 --- --- --- --- 3.54102683067322 0.536582767963409 1.13485717773438 0.440501034259796 0.601073980331421 0.888427972793579 0.850341975688934 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB8B6.02c /DEF=urea transporter (predicted) --- --- --- --- --- --- SPBPB8B6.02c // ||SPAPB8B6.02c|urea transporter |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.32255929601053 -6.59921831652016 -6.51165950469205 -3.12024006205125 -8.03863454401065 Max fold change at or above threshold 1 8.03863454401065 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774099_at SPCC306.08c.S1 --- 8.03433414572884 --- --- --- --- 0.658755779266357 5.29266405105591 2.65290498733521 1.04803621768951 0.98046875 0.725830018520355 0.870360970497131 0.929931640625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC306.08c /DEF=malate dehydrogenase (predicted) --- --- --- --- --- --- SPCC306.08c // |||malate dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.47944361282683 8.03433414572884 1.17354069203937 4.0271449159652 1.59093286264098 Max fold change at or above threshold 2 8.03433414572884 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773026_at SPAC2C4.06c.S1 --- 8.02531240912901 --- --- --- --- 0.573525309562683 4.02780771255493 4.60271978378296 3.47733664512634 0.490234375 0.149657994508743 0.149657994508743 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2C4.06c /DEF=NOL1NOP2sun family --- --- --- --- --- --- SPAC2C4.06c // |||NOL1/NOP2/sun family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.63883070720726 7.02289444841791 3.77366366255886 8.02531240912901 6.06309187606356 Max fold change at or above threshold 3 8.02531240912901 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778490_at SPAC1805.08.S1 --- 8.02114256281203 --- --- --- --- 1.181032538414 9.40901756286621 9.47323036193848 4.41493701934814 0.466064006090164 0.212646484375 0.219482004642487 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1805.08 /GEN=dlc1 /DEF=dynein light chain --- --- --- --- --- --- AF196291 // Schizosaccharomyces pombe cytoplasmic dynein light chain Dlc1 (dlc1) mRNA, complete cds. // gb // 9 // --- /// SPAC1805.08 // |dlc1||dynein light chain Dlc1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 9 // --- --- No No 5.78457425842711 7.966772512044 1.01774261778204 8.02114256281203 3.73820100272337 Max fold change at or above threshold 3 8.02114256281203 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776619_at YJR041C.S1 Nucleolar protein required for normal metabolism of the rRNA primary transcript, proposed to be involved in ribosome biogenesis 8.0158969648357 107.963172912598 747.100982666016 URB2 7046 // ribosome biogenesis // inferred from physical interaction /// 16072 // rRNA metabolism // inferred from mutant phenotype 5730 // nucleolus // inferred from direct assay --- 680.558776855469 131.025207519531 84.9011383056641 813.643188476563 0.000244141003349796 0.014160200022161 0.00805663969367743 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR041C /GEN=GEF1 /DB_XREF=GI:6322501 /SEG=NC_001142:-510153,513677 /DEF=Protein required for cell viability /NOTE=Yjr041cp --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 4.5 --- S0003802 // URB2 SGDID:S0003802, Chr X from 513677-510153, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024165 // cdna:Genscan chromosome:SGD1:X:510153:511595:-1 // ensembl // 11 // --- /// YJR041C // cdna:known chromosome:SGD1:X:510153:513677:-1 gene:YJR041C // ensembl // 11 // --- --- No cerevisiae_gene -1.36296501018959 -5.19410569721114 -1.02307795918689 -8.0158969648357 1.19555167921867 Max fold change at or above threshold 4 8.0158969648357 Max fold change at or above threshold 0.677520642756816 -0.793945959333173 -0.917450748099231 1.03387606467559 427.532077789307 373.459763582409 0.873524544669264 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1779814_at SPAC328.07c.S1 --- 8.01484417250777 --- --- --- --- 1.80202448368073 1.09023463726044 1.18230903148651 0.44841057062149 0.725830018520355 0.943848013877869 0.86572265625 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC328.07c /DEF=involved in metal homeostasis (predicted) --- --- --- --- --- --- SPAC328.07c // |||heavy metal ion homeostasis protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.20074240843286 -1.65287766696616 -8.01484417250777 -1.52415691303233 -4.01869313915403 Max fold change at or above threshold 0 8.01484417250777 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772899_at SPCC285.13c.S1 --- 8.01261104990832 --- --- --- --- 0.429836124181747 0.607117176055908 0.668130099773407 0.235390216112137 0.888427972793579 0.943848013877869 0.943848013877869 0.999755859375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC285.13c /DEF=hypothetical protein --- --- --- --- --- --- SPCC285.13c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.43672955092723 1.41243869907779 8.01261104990832 1.55438331537463 -1.82605773205535 Max fold change at or above threshold 0 8.01261104990832 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770845_at SPBC19F8.02.S1 --- 8.0097700855979 --- --- --- --- 0.886021077632904 1.16429245471954 0.956725060939789 7.09682512283325 0.850341975688934 0.805419981479645 0.780517995357513 0.107421875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19F8.02 /DEF=involved in nuclear migration (sensu Fungi) (predicted) --- --- --- --- --- --- SPBC19F8.02 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.82291928397823 1.31406857479065 -1.69015016048219 1.07979943715987 8.0097700855979 Max fold change at or above threshold 1 8.0097700855979 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770391_at SPAC1F5.09c.S1 --- 8.00562438629055 --- --- --- --- 0.88417375087738 7.07836294174194 3.78654551506042 0.137049958109856 0.601073980331421 0.398925989866257 0.111571997404099 0.900634765625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F5.09c /GEN=shk2 /DEF=serinethreonine protein kinase (PMID 9660817) (PMID 9660818) --- --- --- --- --- --- SPAC1F5.09c // |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.04787955001135 8.00562438629055 -1.67940323907797 4.28258078381424 -6.45147042050644 Max fold change at or above threshold 2 8.00562438629055 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772211_at SPBC23E6.05.S1 --- 7.98903388457939 --- --- --- --- 5.25802516937256 0.65815532207489 4.29340934753418 1.5119115114212 0.567627012729645 0.567627012729645 0.567627012729645 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23E6.05 /DEF=metallopeptidase --- --- --- --- --- --- SPBC23E6.05 // |||metallopeptidase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.4865333912567 -7.98903388457939 2.26198693773523 -1.22467362036941 -3.47773340546233 Max fold change at or above threshold 2 7.98903388457939 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778933_at SPBC365.20c.S1 --- 7.98751912689389 --- --- --- --- 4.52928304672241 0.567045032978058 2.96785116195679 2.67732715606689 0.303710997104645 0.904784977436066 0.366210997104645 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC365.20c /DEF=pyrazinamidasenicotinamidase (predicted) --- --- --- --- --- --- SPBC365.20c // ||SPBC557.06c|nicotinamidase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.05553000206873 -7.98751912689389 -3.39097081164985 -1.5261152933748 -1.69171818858929 Max fold change at or above threshold 3 7.98751912689389 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777974_at SPCC1494.01.S1 --- 7.98268443226237 --- --- --- --- 4.10506153106689 4.17068862915039 5.20073986053467 1.67219710350037 0.219482004642487 0.334473013877869 0.24609400331974 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1494.01 /DEF=IronAscorbate oxidoreductase family --- --- --- --- --- --- SPCC1494.01 // ||SPCC965.15|Iron/Ascorbate oxidoreductase family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.02544064944438 1.01598687317762 -7.98268443226237 1.26690911236671 -2.45489094705037 Max fold change at or above threshold 3 7.98268443226237 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773152_at SPAC1A6.03c.S1 --- 7.98160730451656 --- --- --- --- 2.45465970039368 0.885066270828247 1.50255715847015 0.307539522647858 0.633789002895355 0.932372987270355 0.725830018520355 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1A6.03c /DEF=lysophospholipase (predicted) --- --- --- --- --- --- SPAC1A6.03c // |||phospholipase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.56428972953885 -2.7734191001275 -1.08325122173121 -1.63365479080537 -7.98160730451656 Max fold change at or above threshold 0 7.98160730451656 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774848_at SPBC609.02.S1 --- 7.98159185547598 --- --- --- --- 1.25839674472809 10.0440092086792 9.04987907409668 0.666308224201202 0.432372987270355 0.14404296875 0.303710997104645 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC609.02 /DEF=protein-tyrosine phosphatase --- --- --- --- --- --- SPBC609.02 // |ptn1||phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.28724471024946 7.98159185547598 -1.4647226753529 7.19159447289587 -1.88861055442728 Max fold change at or above threshold 2 7.98159185547598 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776249_at SPCC132.04c.S1 --- 7.97372491371346 --- --- --- --- 1.21466398239136 3.25208282470703 3.53436660766602 0.245971456170082 0.725830018520355 0.7470703125 0.466064006090164 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC132.04c /DEF=glutamate dehydrogenase (predicted) --- --- --- --- --- --- SPCC132.04c // |||NAD dependent glutamate dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.19317757578018 2.67735182062823 -7.97372491371346 2.90974842335225 -4.93823145703318 Max fold change at or above threshold 2 7.97372491371346 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779778_at SPAC1002.03c.S1 --- 7.97353290117868 --- --- --- --- 2.9285089969635 4.48114156723022 4.10173082351685 0.367278724908829 0.850341975688934 0.696289002895355 0.5 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1002.03c /DEF=glycosyl hydrolase family 31 --- --- --- --- --- --- SPAC1002.03c // |gls2||glucosidase II Gls2|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.01131327765991 1.53017852151952 -5.61579144264432 1.40062087149803 -7.97353290117868 Max fold change at or above threshold 3 7.97353290117868 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773005_at SPAC17C9.01c.S1 --- 7.97129576155293 --- --- --- --- 0.325929045677185 1.38339018821716 0.872792184352875 0.205083265900612 0.919434010982513 0.567627012729645 0.725830018520355 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17C9.01c /GEN=nuc2 /DEF=anaphase-promoting complex (APC) (PMID 12477395) --- --- --- --- --- --- SPAC17C9.01c // |nuc2|SPAC1851.01|anaphase-promoting complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 7.97129576155293 4.24445199519694 -3.25929045677185 2.67785947870791 -1.58925226905221 Max fold change at or above threshold 0 7.97129576155293 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775238_at SPCC338.13.S1 --- 7.96795713033929 --- --- --- --- 2.67476892471313 0.923864781856537 2.0378794670105 0.335690677165985 0.633789002895355 0.870360970497131 0.633789002895355 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC338.13 /DEF=Golgi transport complex (predicted) --- --- --- --- --- --- SPCC338.13 // |||involved in secretory pathway |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.02804704320268 -2.89519524636289 1.44781702917444 -1.31252557769618 -7.96795713033929 Max fold change at or above threshold 1 7.96795713033929 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770341_at SPAC4H3.14c.S1 --- 7.96748081535952 --- --- --- --- 5.30790185928345 9.55279159545898 5.10993480682373 4.88187980651855 0.753906011581421 0.533936023712158 0.665526986122131 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4H3.14c /DEF=sequence orphan --- --- --- --- --- --- SPAC4H3.14c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.96748081535952 1.79973026041378 -1.80852429782557 -1.03874160042029 -1.08726598557303 Max fold change at or above threshold 4 7.96748081535952 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776369_at SPAC589.08c.S1 --- 7.96687992021137 --- --- --- --- 7.89027786254883 7.10956954956055 7.69095039367676 1.91274333000183 0.043701171875 0.303710997104645 0.149657994508743 0.633789002895355 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC589.08c /DEF=DASH complex (predicted) --- --- --- --- --- --- SPAC589.08c // |dam1||DASH complex subunit Dam1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.83924136670036 -1.10981091155322 -7.96687992021137 -1.0259171440029 -4.12511064019304 Max fold change at or above threshold 3 7.96687992021137 Max fold change at or above threshold PPAAAA No 4 0 PAAA 3 1 0 No No x = 1
1769486_at SPAC1F3.07c.S1 --- 7.96635007720842 --- --- --- --- 0.822060644626617 6.54882287979126 5.05705785751343 2.29187059402466 0.870360970497131 0.334473013877869 0.129638999700546 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F3.07c /DEF=sequence orphan --- --- --- --- --- --- SPAC1F3.07c // |||bromodomain protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.34960541435676 7.96635007720842 6.70832545128517 6.15168466045514 2.78795805273665 Max fold change at or above threshold 2 7.96635007720842 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776535_at SPAC869.02c.S1 --- 7.96301916300662 --- --- --- --- 13.4432306289673 18.1996574401855 1.68820774555206 3.24832463264465 0.171387001872063 0.018554700538516 0.567627012729645 0.303710997104645 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC869.02c /DEF=flavoprotein (predicted) --- --- --- --- --- --- SPAC869.02c // |||nitric oxide dioxygenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.67623801391111 1.35381575623416 -4.77949647151328 -7.96301916300662 -4.13851204829314 Max fold change at or above threshold 3 7.96301916300662 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1777011_at SPAC5D6.12.S1 --- 7.95877038155976 --- --- --- --- 3.34735894203186 0.420587450265884 0.593435406684875 1.12583255767822 0.212890625 0.870360970497131 0.919434010982513 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5D6.12 /DEF=dubious --- --- --- --- --- --- SPAC5D6.12 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.46077808146118 -7.95877038155976 -6.6821948545803 -5.64064581304864 -2.97322982818603 Max fold change at or above threshold 1 7.95877038155976 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779610_at SPAC5H10.04.S1 --- 7.95408877212664 --- --- --- --- 5.72713947296143 6.81950235366821 7.46181011199951 8.15698337554932 0.149657994508743 0.219482004642487 0.171387001872063 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5H10.04 /DEF=NADPH dehydrogenase (predicted) --- --- --- --- --- --- SPAC5H10.04 // |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.95408877212664 1.19073446453748 1.40756536556375 1.30288604760329 1.42426833047449 Max fold change at or above threshold 4 7.95408877212664 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778529_at SPAC1782.06c.S1 --- 7.94608531369496 --- --- --- --- 4.57365894317627 10.7757883071899 9.22128963470459 11.4451656341553 0.533936023712158 0.334473013877869 0.219482004642487 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1782.06c /DEF=prohibitin (predicted) --- --- --- --- --- --- SPAC1782.06c // |||prohibitin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.04326447002176 2.35605418792038 -7.94608531369496 2.01617342903594 2.50240907255033 Max fold change at or above threshold 4 7.94608531369496 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773813_at SPBC4B4.05.S1 --- 7.94289322662709 --- --- --- --- 0.799396574497223 3.61315011978149 6.34952163696289 2.0815212726593 0.805419981479645 0.398925989866257 0.334473013877869 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4B4.05 /GEN=smg1 /DEF=small nuclear ribonucleoprotein (snRNP) (subunit G) --- --- --- --- --- --- SPBC4B4.05 // |smg1||small nuclear ribonucleoprotein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 1.15518971604461 4.5198468883282 2.80648949282821 7.94289322662709 2.60386563948997 Max fold change at or above threshold 2 7.94289322662709 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776803_at SPCC306.04c.S1 --- 7.94269705296638 --- --- --- --- 0.437465190887451 1.0628160238266 3.1550407409668 2.92065191268921 0.601073980331421 0.725830018520355 0.398925989866257 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC306.04c /GEN=set1 /DEF=SET1 complex (TAP) (PMID 12488447) --- --- --- --- --- --- SPCC306.04c // |set1||histone lysine methyltransferase Set1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 7.94269705296638 2.42948706769228 1.63255956033751 7.21209551454006 6.67630699202447 Max fold change at or above threshold 2 7.94269705296638 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778864_at SPAC23C11.07.S1 --- 7.94111387440815 --- --- --- --- 1.91427612304688 15.2014846801758 10.2424716949463 8.27477645874023 0.780517995357513 0.171387001872063 0.171387001872063 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C11.07 /DEF=sequence orphan --- --- --- --- --- --- SPAC23C11.07 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.77248334050728 7.94111387440815 5.20992007030465 5.35057172350025 4.32266607680903 Max fold change at or above threshold 3 7.94111387440815 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772523_at SPBC20F10.09.S1 --- 7.94078176450593 --- --- --- --- 0.283095270395279 0.519468665122986 1.04086303710938 0.265874475240707 0.943848013877869 0.753906011581421 0.601073980331421 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC20F10.09 /GEN=lsm5 /DEF=U6 snRNA-associated protein --- --- --- --- --- --- SPBC20F10.09 // |lsm5||U6 snRNA-associated protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.77264880118655 1.8349605925866 7.94078176450593 3.67672351309877 -1.06477039640222 Max fold change at or above threshold 0 7.94078176450593 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777983_at SPAC19A8.08.S1 --- 7.93792589837732 --- --- --- --- 3.33187961578369 10.7253570556641 5.07828617095947 0.419741839170456 0.5 0.194580003619194 0.303710997104645 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19A8.08 /GEN=upf2 /DEF=involved in mRNA catabolism, nonsense-mediated (required) (PMID 11073994) --- --- --- --- --- --- SPAC19A8.08 // |upf2||nonsense-mediated decay protein Upf2|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.05915284845997 3.21901097652394 -1.70179086709414 1.52415055661157 -7.93792589837732 Max fold change at or above threshold 3 7.93792589837732 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778164_at SPBC19C2.11c.S1 --- 7.93619548018963 --- --- --- --- 0.399139732122421 3.16765093803406 0.533303380012512 1.25675475597382 0.780517995357513 0.325927734375 0.888427972793579 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C2.11c /DEF=hypothetical protein --- --- --- --- --- --- SPBC19C2.11c // |||mitochondrial outer membrane protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.10515034332679 7.93619548018963 -1.05832490966285 1.3361320286925 3.14865861459353 Max fold change at or above threshold 1 7.93619548018963 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771769_at SPAC1687.19c.S1 --- 7.93259797491404 --- --- --- --- 14.4539861679077 5.93739414215088 12.0268049240112 5.55654716491699 0.366210997104645 0.601073980331421 0.219482004642487 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.19c /DEF=queuine tRNA-ribosyltransferase --- --- --- --- --- --- SPAC1687.19c // |||queuine tRNA-ribosyltransferase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.72601537095299 -2.43439896726674 -7.93259797491404 -1.20181430223838 -2.60125321335658 Max fold change at or above threshold 4 7.93259797491404 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779930_at SPAC1F12.07.S1 --- 7.93072425892873 --- --- --- --- 1.84125900268555 1.03855097293854 2.61594533920288 4.90357208251953 0.398925989866257 0.753906011581421 0.398925989866257 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F12.07 /DEF=phosphoserine aminotransferase (predicted) --- --- --- --- --- --- SPAC1F12.07 // |||phosphoserine aminotransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.93072425892873 -1.77291153796311 3.52308204278241 1.42073729735329 2.66316258351893 Max fold change at or above threshold 2 7.93072425892873 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772153_at SPAC23C4.19.S1 --- 7.92636316111058 --- --- --- --- 5.35457277297974 1.42795097827911 5.18459367752075 1.19254744052887 0.432372987270355 0.725830018520355 0.334473013877869 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C4.19 /GEN=spt5 /DEF=involved in transcriptional regulation --- --- --- --- --- --- SPAC23C4.19 // |spt5||elongation factor Spt5p|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.92636316111058 -3.74982954907371 -6.36155574776026 -1.03278542274122 -4.49002915188439 Max fold change at or above threshold 2 7.92636316111058 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779752_at SPBC29A3.06.S1 --- 7.92385822951805 --- --- --- --- 0.819390594959259 1.484983086586 6.49273490905762 2.41147994995117 0.753906011581421 0.696289002895355 0.24609400331974 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A3.06 /DEF=WD repeat protein --- --- --- --- --- --- D89098 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0124. // gb // 11 // --- /// SPBC29A3.06 // |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.8063250777114 1.81230184446995 3.26421826054425 7.92385822951805 2.9430163889922 Max fold change at or above threshold 1 7.92385822951805 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778895_at SPCC70.07c.S1 --- 7.92138952342898 --- --- --- --- 9.83597373962402 3.38311195373535 4.40683555603027 1.91747915744781 0.149657994508743 0.466064006090164 0.171387001872063 0.187744140625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC70.07c /GEN=tmp1 /DEF=thymidylate kinase (PMID 1327149) --- --- --- --- --- --- SPCC70.07c // |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- X65868 // gb // 8 // Cross Hyb Matching Probes No No -7.92138952342898 -2.90737459301752 -1.6388842939552 -2.23198111537531 -5.12963789015355 Max fold change at or above threshold 3 7.92138952342898 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778346_at SPAC1687.08.S1 --- 7.919923931736 --- --- --- --- 6.51310873031616 0.822370111942291 1.02343440055847 1.65764462947845 0.171387001872063 0.601073980331421 0.5 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.08 /DEF=sequence orphan --- --- --- --- --- --- SPAC1687.08 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.39301064705586 -7.919923931736 -3.23857132763372 -6.36397284160281 -3.92913451682668 Max fold change at or above threshold 1 7.919923931736 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780162_at SPBC365.06.S1 --- 7.91892227701437 --- --- --- --- 0.77186506986618 3.25315165519714 2.1848726272583 0.550868034362793 0.780517995357513 0.533936023712158 0.725830018520355 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC365.06 /GEN=pmt3 /DEF=ubiquitin family protein --- --- --- --- --- --- SPBC365.06 // |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- AF019235 // gb // 6 // Cross Hyb Matching Probes No No 7.91892227701437 4.21466365327446 -1.85942073820158 2.83064062950419 -1.40117963235791 Max fold change at or above threshold 1 7.91892227701437 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774839_at SPBC337.13c.S1 --- 7.91309201653125 --- --- --- --- 1.05949079990387 0.954872131347656 5.414137840271 4.58707857131958 0.274170011281967 0.567627012729645 0.24609400331974 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC337.13c /GEN=gtr1 /DEF=GTPase --- --- --- --- --- --- SPBC337.13c // |gtr1||GTPase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 7.91309201653125 -1.1095630138546 5.56921382956783 5.11013199997795 4.32951241458234 Max fold change at or above threshold 2 7.91309201653125 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779415_at SPAC22E12.12.S1 --- 7.90980829801556 --- --- --- --- 0.189363270998001 0.402368307113647 0.426157832145691 1.49782717227936 0.995849609375 0.932372987270355 0.5 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22E12.12 /DEF=dubious --- --- --- --- --- --- SPAC22E12.12 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.35923579830396 2.12484873646851 -1.89363270998001 2.25047777163814 7.90980829801556 Max fold change at or above threshold 0 7.90980829801556 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772898_at SPBC887.05c.S1 --- 7.90777831638033 --- --- --- --- 9.2042875289917 1.16395366191864 6.48989200592041 3.72530913352966 0.00415039015933871 0.567627012729645 0.149657994508743 0.0461426004767418 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC887.05c /GEN=cwf29 /DEF=RNA-binding protein --- --- --- --- --- --- SPBC887.05c // |cwf29||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.03186476947533 -7.90777831638033 -2.12019085549967 -1.41824972135054 -2.47074462791516 Max fold change at or above threshold 3 7.90777831638033 Max fold change at or above threshold PAAAAP No 3 0 PAAP 2 2 0 No No 1 < x = 2
1777148_at SPAC24B11.10c.S1 --- 7.90416433315015 --- --- --- --- 2.18306159973145 17.255277633667 10.3855781555176 2.53777599334717 0.633789002895355 0.149657994508743 0.171387001872063 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24B11.10c /GEN=cfh1 /DEF=Chs Four Homologue (pers. comm. Henar Montero) --- --- --- --- --- --- SPAC24B11.10c // |cfh1|chr3|chitin synthase regulatory factor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.7868632994715 7.90416433315015 -1.49730286200375 4.75734544402924 1.16248483032241 Max fold change at or above threshold 3 7.90416433315015 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780108_at SPBC16D10.08c.S1 --- 7.90212981738318 --- --- --- --- 1.95661294460297 0.24760577082634 1.25738382339478 3.44600319862366 0.5 0.633789002895355 0.274170011281967 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16D10.08c /DEF=AAA family ATPase --- --- --- --- --- --- SPBC16D10.08c // |||heat shock protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.63948920808476 -7.90212981738318 -2.08891832506597 -1.55609839111844 1.76120842301946 Max fold change at or above threshold 1 7.90212981738318 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777105_at SPBC215.12.S1 --- 7.90204250711904 --- --- --- --- 18.0829563140869 19.8256378173828 15.600305557251 5.1449236869812 0.194580003619194 0.303710997104645 0.24609400331974 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC215.12 /GEN=cwf10 /DEF=complexed with Cdc5p (PMID 11884590) --- --- --- --- --- --- SPBC215.12 // |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.53040032930314 1.09637149330159 -7.90204250711904 -1.15914116218589 -3.51471808218348 Max fold change at or above threshold 4 7.90204250711904 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770310_at SPBC16E9.06c.S1 --- 7.90100099301461 --- --- --- --- 0.771727740764618 2.72401595115662 6.09742164611816 3.63873910903931 0.828612983226776 0.665526986122131 0.129638999700546 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16E9.06c /GEN=uvi31 /DEF=BolA domain --- --- --- --- --- --- SPBC16E9.06c // |uvi31||BolA domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.1112501234847 3.52976290376409 4.12531246517169 7.90100099301461 4.71505547466013 Max fold change at or above threshold 3 7.90100099301461 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771156_at SPAC4G9.04c.S1 --- 7.89983645104329 --- --- --- --- 1.96733236312866 0.558780193328857 0.640483260154724 0.860191524028778 0.780517995357513 0.888427972793579 0.780517995357513 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G9.04c /DEF=involved in polyadenylation (predicted) --- --- --- --- --- --- SPAC4G9.04c // |||cleavage and polyadenylylation specificity factor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.89983645104329 -3.52076252275254 1.5327435076149 -3.07163744241092 -2.2870864315362 Max fold change at or above threshold 0 7.89983645104329 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774202_at SPAC1399.04c.S1 --- 7.89496155220748 --- --- --- --- 1.84632277488709 7.37757205963135 5.02402210235596 0.383398085832596 0.805419981479645 0.432372987270355 0.24609400331974 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1399.04c /DEF=uracil phosphoribosyltransferase (predicted) --- --- --- --- --- --- SPAC1399.04c // |||uracil phosphoribosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.15338232055809 3.99581923593102 -7.89496155220748 2.72109631679283 -4.81568073267129 Max fold change at or above threshold 2 7.89496155220748 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779323_at SPAC212.10.S1 --- 7.8879350064973 --- --- --- --- 11.9469575881958 14.8385391235352 10.2153406143188 5.6732063293457 0.533936023712158 0.219482004642487 0.398925989866257 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC212.10 /DEF=pseudo-malic acid transport protein --- --- --- --- --- --- SPBCPT2R1.08c // |||RecQ type DNA helicase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 0 // chromosome1|c212:0-6205(-) /// SPAPB8E5.03 // |mae1||malic acid transport protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 0 // chromosome1|c212:4913195-4914512(+) --- No No -5.82343486064956 1.24203497116256 -7.8879350064973 -1.16951142788619 -2.10585635258812 Max fold change at or above threshold 4 7.8879350064973 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779794_at SPBP22H7.04.S1 --- 7.88790209775456 --- --- --- --- 3.56553220748901 0.694563806056976 5.82224082946777 4.04894685745239 0.633789002895355 0.79931640625 0.219482004642487 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP22H7.04 /DEF=sequence orphan --- --- --- --- --- --- SPBP22H7.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.80413901168198 -5.13348403184218 -7.88790209775456 1.63292335916607 1.13557994202044 Max fold change at or above threshold 3 7.88790209775456 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775987_at SPAC23H4.07c.S1 --- 7.87618823575333 --- --- --- --- 0.739085137844086 1.60243344306946 3.13094544410706 5.82117366790771 0.888427972793579 0.753906011581421 0.432372987270355 0.030273400247097 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H4.07c /GEN=srp102 /DEF=localization signal recognition particle (beta subunit) (predicted) --- --- --- --- --- --- SPAC23H4.07c // |srp102||signal recognition particle receptor beta subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.14242304567875 2.16813105962834 -1.50089144165776 4.23624462702637 7.87618823575333 Max fold change at or above threshold 2 7.87618823575333 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1778720_at YDR214W.S1 Co-chaperone that binds to Hsp82p and activates its ATPase activity; similar to Hch1p; expression is regulated by stresses such as heat shock 7.870097655441 4258.20336914063 625.274505615234 AHA1 6457 // protein folding // inferred from mutant phenotype /// 6457 // protein folding // inferred from physical interaction /// 6950 // response to stress // inferred from mutant phenotype /// 6950 // response to stress // inferred from physical interaction /// 6950 // response to stress // inferred from expression pattern 5737 // cytoplasm // inferred from physical interaction 30189 // chaperone activator activity // inferred from direct assay /// 30189 // chaperone activator activity // inferred from physical interaction 596.786193847656 4696.765625 3819.64111328125 653.762817382813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR214W /GEN=AHA1 /DB_XREF=GI:6320420 /SEG=NC_001136:+892868,893920 /DEF=Activator of Heat Shock Protein 90 ATPase /NOTE=Aha1p; go_component: cytoplasm [goid GO:0005737] [evidence IPI] [pmid 12504007]; go_function: chaperone activator activity [goid GO:0030189] [evidence IDA,IPI] [pmid 12504007]; go_process: protein folding [goid GO:0006457] [evidence IMP,IPI] [pmid 12504007]; go_process: response to stress [goid GO:0006950] [evidence IEP,IMP,IPI] [pmid 12504007] --- --- --- --- --- --- S0002622 // AHA1 SGDID:S0002622, Chr IV from 892870-893922, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023659 // cdna:GeneFinder chromosome:SGD1:IV:892870:893922:1 // ensembl // 11 // --- /// GENSCAN00000025264 // cdna:Genscan chromosome:SGD1:IV:892870:893922:1 // ensembl // 11 // --- /// YDR214W // cdna:known chromosome:SGD1:IV:892870:893922:1 gene:YDR214W // ensembl // 11 // --- --- No cerevisiae_gene 1.66872351447087 7.870097655441 1.09217994537595 6.40035100117665 1.09547242232232 Max fold change at or above threshold 4 7.870097655441 Max fold change at or above threshold -0.867010866181341 1.05971963160214 0.647526698573941 -0.840235463994735 2441.73893737793 2127.9465062026 0.871488132342151 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769400_at SPBC1685.06.S1 --- 7.86938047501522 --- --- --- --- 5.0975489616394 10.0925540924072 0.647770047187805 0.865540027618408 0.398925989866257 0.0676269978284836 0.633789002895355 0.59326171875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1685.06 /GEN=cid11 /DEF=cid1-related --- --- --- --- --- --- SPBC1685.06 // |cid11||cid1-related|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.56779939942039 1.97988369868671 -1.54637481938431 -7.86938047501522 -5.88944335210661 Max fold change at or above threshold 2 7.86938047501522 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777776_at SPAC25B8.08.S1 --- 7.8652952532928 --- --- --- --- 3.08358383178711 4.63301944732666 5.25988388061523 5.07978248596191 0.398925989866257 0.274170011281967 0.334473013877869 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25B8.08 /DEF=conserved eukaryotic family --- --- --- --- --- --- SPAC25B8.08 // |||conserved eukaryotic family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.8652952532928 1.50247883633557 1.33190304115951 1.70576970419735 1.64736318617221 Max fold change at or above threshold 4 7.8652952532928 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1776683_at SPAC3C7.08c.S1 --- 7.86211258430774 --- --- --- --- 2.67179703712463 3.84861946105957 3.95704340934753 3.86872982978821 0.334473013877869 0.567627012729645 0.601073980331421 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3C7.08c /GEN=elf1 /DEF=AAA family ATPase --- --- --- --- --- --- SPAC3C7.08c // |elf1||AAA family ATPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.05297684906449 1.44046101091624 -7.86211258430774 1.48104191836595 1.44798791825584 Max fold change at or above threshold 4 7.86211258430774 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778449_at SPBC211.05.S1 --- 7.86058949406868 --- --- --- --- 0.260084122419357 1.17827999591827 0.530357122421265 1.01487481594086 0.916015625 0.567627012729645 0.665526986122131 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC211.05 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC211.05 // |||splicing factor 3B|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 7.86058949406868 4.53038034370443 3.39627855012762 2.03917531561624 3.90210216025599 Max fold change at or above threshold 0 7.86058949406868 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773037_at SPBP4H10.10.S1 --- 7.85587721151024 --- --- --- --- 4.32517528533936 6.11184644699097 8.49650001525879 4.41774320602417 0.358154296875 0.398925989866257 0.129638999700546 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP4H10.10 /DEF=rhomboid family protease --- --- --- --- --- --- SPBP4H10.10 // |||rhomboid family protease|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.85587721151024 1.41308641703094 1.29914955542938 1.96442905887736 1.02140212004785 Max fold change at or above threshold 4 7.85587721151024 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776882_at SPAC4A8.16c.S1 --- 7.85364768343791 --- --- --- --- 0.609201550483704 3.27060961723328 4.78445434570313 1.47209548950195 0.976073980331421 0.919434010982513 0.696289002895355 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4A8.16c /GEN=tif33 /DEF=translation initiation factor --- --- --- --- --- --- D89140 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0552. // gb // 11 // --- /// SPAC4A8.16c // |tif33|SPAC823.01c|eukaryotic translation initiation factor eIF3c|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.40848423595387 5.3686823591247 1.79436919523955 7.85364768343791 2.4164342463231 Max fold change at or above threshold 2 7.85364768343791 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770327_at SPAC1F3.06c.S1 --- 7.85348685277853 --- --- --- --- 5.46200895309448 6.20164632797241 6.45847225189209 4.66235256195068 0.601073980331421 0.24609400331974 0.0375977009534836 0.398925989866257 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F3.06c /GEN=spo15 /DEF=involved in sporulation (required) --- --- --- --- --- --- SPAC1F3.06c // |spo15||sporulation protein Spo15|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.85348685277853 1.13541489609952 1.3546673525009 1.1824353104059 -1.17151349678481 Max fold change at or above threshold 4 7.85348685277853 Max fold change at or above threshold AAAPPA No 4 0 AAPA 3 1 0 No No x = 1
1770318_at SPBC32C12.03c.S1 --- 7.85251575280697 --- --- --- --- 6.26379632949829 0.797680199146271 11.6529512405396 4.13357830047607 0.219482004642487 0.725830018520355 0.0676269978284836 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32C12.03c /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPBC32C12.03c // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.19239922132591 -7.85251575280697 -1.48610607834537 1.86036560378918 -1.51534478705215 Max fold change at or above threshold 3 7.85251575280697 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772853_at YMR319C.S1 Low-affinity Fe(II) transporter of the plasma membrane 7.85241915559118 859.147033691406 137.710929870605 FET4 40 // low affinity iron ion transport // inferred from mutant phenotype /// 15680 // intracellular copper ion transport // inferred from mutant phenotype 5887 // integral to plasma membrane // inferred from direct assay 5381 // iron ion transporter activity // inferred from mutant phenotype 128.583770751953 708.600402832031 1009.69366455078 146.838088989258 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR319C /GEN=FET4 /DB_XREF=GI:6323981 /SEG=NC_001145:-912878,914536 /DEF=Low-affinity Fe(II) transporter of the plasma membrane /NOTE=Fet4p; go_component: integral to plasma membrane [goid GO:0005887] [evidence IDA] [pmid 9115232]; go_function: iron ion transporter activity [goid GO:0005381] [evidence IMP] [pmid 7929320]; go_process: intracellular copper ion transport [goid GO:0015680] [evidence IMP] [pmid 11523804]; go_process: low affinity iron ion transport [goid GO:0000040] [evidence IMP] [pmid 7929320] --- --- --- --- --- AAA53129.1 // span:99-121,223-245,273-295,353-375,385-404,464-486,490-512 // numtm:7 /// S0004938 // span:99-121,223-245,273-295,353-375,385-404,464-486,490-512 // numtm:7 S0004938 // FET4 SGDID:S0004938, Chr XIII from 914536-912878, reverse complement, Verified ORF // sgd // 11 // --- /// L34837 // Saccharomyces cerevisiae Fe(II) transport protein (FET4) mRNA, complete cds. // gb // 9 // --- /// GENSCAN00000018986 // cdna:Genscan chromosome:SGD1:XIII:912878:914536:-1 // ensembl // 11 // --- /// GENEFINDER00000021841 // cdna:GeneFinder chromosome:SGD1:XIII:912878:914536:-1 // ensembl // 11 // --- /// YMR319C // cdna:known chromosome:SGD1:XIII:912878:914536:-1 gene:YMR319C // ensembl // 11 // --- --- No cerevisiae_gene 2.4369937768086 5.51080745795649 1.83763346895513 7.85241915559118 1.14196440289901 Max fold change at or above threshold 4 7.85241915559118 Max fold change at or above threshold -0.851502148764062 0.48388193573145 1.177095073786 -0.809474860753384 498.428981781006 434.344424809586 0.871426904706804 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-TagO-5_at AFFX-r2-TagO-5 --- 7.84954366161193 --- --- --- --- 0.850930690765381 1.30450820922852 3.1032600402832 0.873146414756775 0.567627012729645 0.780517995357513 0.567627012729645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Clone 76G7, synthetic insert (999 bp)+ poly A tail (21 bp), 5 prime target sequence 1-399 --- --- --- --- --- --- AFFX-r2-TagO-5 // --- // unknown // --- // --- /// AFFX-r2-TagO-5 // --- // unknown // --- // --- /// AFFX-r2-TagO-5 // --- // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-TagO-5 // --- // unknown // --- // --- /// AFFX-r2-TagO-5 // --- // affx // --- // --- /// AFFX-r2-TagO-5 // --- // affx // --- // --- /// AFFX-r2-TagO-5 // --- // affx // --- // --- /// AFFX-r2-TagO-5 // --- // affx // --- // --- /// AFFX-r2-TagO-5 // --- // affx // --- // --- /// AFFX-r2-TagO-5 // --- // affx // --- // --- /// AFFX-r2-TagO-5 // --- // affx // --- // --- /// AFFX-r2-TagO-5 // --- // affx // --- // --- /// AFFX-r2-TagO-5 // --- // affx // --- // --- /// AFFX-r2-TagO-5 // --- // affx // --- // --- /// AFFX-r2-TagO-5 // --- // affx // --- // --- /// AFFX-r2-TagO-5 // --- // affx // --- // --- --- AFFX_control No 6.47034374858156 1.53303697161887 7.84954366161193 3.64690106252007 1.0261075599135 Max fold change at or above threshold 1 7.84954366161193 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769364_at SPAC10F6.12c.S1 --- 7.84488061720184 --- --- --- --- 1.42890024185181 11.2095518112183 8.46467208862305 2.60342073440552 0.888427972793579 0.219482004642487 0.171387001872063 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC10F6.12c /GEN=mam4 /DEF=protein-s isoprenylcysteine o-methyltransferase (PMID 9032282) --- --- --- --- --- --- SPAC10F6.12c // |mam4||protein-S isoprenylcysteine O-methyltransferase Mam4|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.62703141304823 7.84488061720184 4.3015836837558 5.92390696053989 1.82197515134547 Max fold change at or above threshold 3 7.84488061720184 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774543_at SPBC32F12.12c.S1 --- 7.84233907062166 --- --- --- --- 0.600213646888733 3.56568193435669 3.50259280204773 4.50863790512085 0.633789002895355 0.366210997104645 0.567627012729645 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32F12.12c /DEF=conserved fungal protein --- --- --- --- --- --- SPBC32F12.12c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.64988181626973 5.94068787479218 7.84233907062166 5.83557674871901 7.51172174856707 Max fold change at or above threshold 3 7.84233907062166 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772829_at SPBC651.06.S1 --- 7.84211746084505 --- --- --- --- 0.783648788928986 6.14546585083008 0.245750457048416 0.467319905757904 0.805419981479645 0.466064006090164 0.919434010982513 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC651.06 /DEF=hypothetical protein --- --- --- --- --- --- SPBC651.06 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.88422350915618 7.84211746084505 -1.26562544973331 -3.18879890739978 -1.67690008337662 Max fold change at or above threshold 1 7.84211746084505 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776455_at SPBC244.02c.S1 --- 7.84086702632677 --- --- --- --- 0.774443626403809 5.16896533966064 5.99450778961182 5.34705448150635 0.870360970497131 0.129638999700546 0.466064006090164 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC244.02c /DEF=HAT repeat protein (inferred from context) --- --- --- --- --- --- SPBC244.02c // |||U3 snoRNP protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.33024100346894 6.67442427496389 7.84086702632677 7.74040560892443 6.90438180288968 Max fold change at or above threshold 3 7.84086702632677 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769730_at YHR128W.S1 Uracil phosphoribosyltransferase, synthesizes UMP from uracil; involved in the pyrimidine salvage pathway 7.83809980015508 129.16410446167 256.519050598145 FUR1 8655 // pyrimidine salvage // inferred from direct assay --- 4845 // uracil phosphoribosyltransferase activity // inferred from direct assay 246.521408081055 92.990364074707 165.337844848633 266.516693115234 0.000732421991415322 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR128W /GEN=FUR1 /DB_XREF=GI:37362660 /SEG=NC_001140:+362117,362767 /DEF=Uracil phosphoribosyltransferase, synthesizes UMP from uracil; involved in the pyrimidine salvage pathway /NOTE=Fur1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: uracil phosphoribosyltransferase activity [goid GO:0004845] [evidence IDA] [pmid 2189783]; go_process: pyrimidine salvage [goid GO:0008655] [evidence IDA] [pmid 2189783] --- --- --- --- --- --- S0001170 // FUR1 SGDID:S0001170, Chr VIII from 362117-362767, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020249 // cdna:GeneFinder chromosome:SGD1:VIII:362117:362767:1 // ensembl // 11 // --- /// YHR128W // cdna:known chromosome:SGD1:VIII:362117:362767:1 gene:YHR128W // ensembl // 11 // --- --- No cerevisiae_gene 7.83809980015508 -2.65104250890988 1.18494763595035 -1.49101621777365 1.08110973075249 Max fold change at or above threshold 4 7.83809980015508 Max fold change at or above threshold 0.673877366208702 -1.25349636996004 -0.345272009055722 0.924891012807056 192.841577529907 79.6581592481067 0.413075646177769 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772507_at SPAC3A12.04c.S1 --- 7.83671221291118 --- --- --- --- 0.478106617927551 0.174067825078964 1.57586526870728 3.275057554245 0.888427972793579 0.870360970497131 0.633789002895355 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A12.04c /DEF=RNase P subunit (predicted) --- --- --- --- --- --- SPAC3A12.04c // |||RNase subunit p30 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.02148322616838 -2.74666853400772 7.83671221291118 3.29605408002545 6.85005693592234 Max fold change at or above threshold 1 7.83671221291118 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775656_at SPBC947.02.S1 --- 7.83640167405997 --- --- --- --- 6.0520339012146 6.00928258895874 5.42897844314575 0.772297561168671 0.2666015625 0.00805663969367743 0.0805663987994194 0.398925989866257 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC947.02 /GEN=apl2 /DEF=adaptin --- --- --- --- --- --- SPBC947.02 // |apl2||adaptin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.47824584473648 -1.00711421232451 -1.74316369466454 -1.11476476920911 -7.83640167405997 Max fold change at or above threshold 3 7.83640167405997 Max fold change at or above threshold APPMAA No 4 0 APAA 3 1 0 No No x = 1
1776870_at SPAPB8E5.04c.S1 --- 7.83635636282223 --- --- --- --- 2.96039247512817 1.89916396141052 2.26157784461975 0.377776652574539 0.5 0.805419981479645 0.780517995357513 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB8E5.04c /DEF=phosphatidylglycerolphosphatidylinositol transfer protein (predicted) --- --- --- --- --- --- SPAPB8E5.04c // |||phosphatidylglycerol/phosphatidylinositol transfer protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.86454191930182 -1.55878720072672 -1.24784056147663 -1.30899428563597 -7.83635636282223 Max fold change at or above threshold 1 7.83635636282223 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778310_at SPCC63.11.S1 --- 7.83332655128277 --- --- --- --- 3.35613894462585 0.940295100212097 1.72100865840912 0.428443640470505 0.389892578125 0.805419981479645 0.533936023712158 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC63.11 /GEN=prp28 /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPCC63.11 // |prp28||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.05463381352986 -3.56924006502728 -4.24028147315086 -1.95009997667777 -7.83332655128277 Max fold change at or above threshold 1 7.83332655128277 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776424_at SPCC622.04.S1 --- 7.82985075803928 --- --- --- --- 0.725566387176514 5.38524341583252 3.0820848941803 2.15815615653992 0.466064006090164 0.0952147990465164 0.390625 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC622.04 /DEF=dubious --- --- --- --- --- --- SPCC622.04 // |||dubious|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 7.82985075803928 7.42212361406209 3.1620706968809 4.2478330703466 2.9744434068097 Max fold change at or above threshold 2 7.82985075803928 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776575_at SPBC16C6.01c.S1 --- 7.8295748753405 --- --- --- --- 1.05974864959717 0.342850774526596 8.29738140106201 0.7607182264328 0.828612983226776 0.991943001747131 0.366210997104645 0.865478515625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16C6.01c /DEF=SET domain --- --- --- --- --- --- SPBC16C6.01c // ||SPBC543.11c|SET domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.79464297069826 -3.09099097431078 -1.86488375334818 7.8295748753405 -1.39308959976757 Max fold change at or above threshold 1 7.8295748753405 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775411_at SPAC24H6.03.S1 --- 7.81564662773804 --- --- --- --- 5.8714427947998 0.751242101192474 3.65817904472351 2.22952437400818 0.5 0.953857004642487 0.567627012729645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24H6.03 /GEN=pcu3 /DEF=cullin family --- --- --- --- --- --- SPAC24H6.03 // |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.19603387974799 -7.81564662773804 -3.3585201496963 -1.60501788540631 -2.63349567434613 Max fold change at or above threshold 2 7.81564662773804 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777343_at YNL202W.S1 Peroxisomal 2,4-dienoyl-CoA reductase, auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate 7.80565873904523 431.249053955078 70.0570945739746 SPS19 9062 // fatty acid catabolism // inferred from direct assay /// 9062 // fatty acid catabolism // inferred from sequence similarity /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from expression pattern 5782 // peroxisomal matrix // inferred from direct assay 8670 // 2,4-dienoyl-CoA reductase (NADPH) activity // inferred from direct assay /// 8670 // 2,4-dienoyl-CoA reductase (NADPH) activity // inferred from sequence similarity 68.5876312255859 327.12646484375 535.371643066406 71.5265579223633 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL202W /GEN=SPS19 /DB_XREF=GI:6324126 /SEG=NC_001146:+259568,260455 /DEF=late sporulation specific gene which may function during spore wall formation /NOTE=Sps19p; go_component: peroxisomal matrix [goid GO:0005782] [evidence IDA] [pmid 9268358]; go_function: 2,4-dienoyl-CoA reductase (NADPH) activity [goid GO:0008670] [evidence IDA,ISS] [pmid 9268358]; go_process: fatty acid catabolism [goid GO:0009062] [evidence IDA,ISS] [pmid 9268358]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IEP,IMP] [pmid 7969036] --- --- --- --- scop // a.4.1.Paired domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Paired domain // 4.30000019073486 --- S0005146 // SPS19 SGDID:S0005146, Chr XIV from 259568-260455, Verified ORF // sgd // 11 // --- /// GENSCAN00000019878 // cdna:Genscan chromosome:SGD1:XIV:259568:260455:1 // ensembl // 11 // --- /// GENEFINDER00000020610 // cdna:GeneFinder chromosome:SGD1:XIV:259568:260455:1 // ensembl // 11 // --- /// YNL202W // cdna:known chromosome:SGD1:XIV:259568:260455:1 gene:YNL202W // ensembl // 11 // --- YNL203C // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene -2.4847424298446 4.7694673077107 2.68596532248681 7.80565873904523 1.04284922287389 Max fold change at or above threshold 4 7.80565873904523 Max fold change at or above threshold -0.808456180187373 0.339577814447923 1.26428432941419 -0.795405963674736 250.653074264526 225.201374546662 0.898458457800507 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778848_at SPAC8C9.07.S1 --- 7.79940354200324 --- --- --- --- 0.439596474170685 3.42859029769897 0.123471863567829 1.35854876041412 0.904784977436066 0.398925989866257 0.805419981479645 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8C9.07 /DEF=dubious --- --- --- --- --- --- SPAC8C9.07 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.60436760740888 7.79940354200324 -1.14903308243043 -3.56029674670937 3.09044507915373 Max fold change at or above threshold 1 7.79940354200324 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777073_at SPBC16A3.01.S1 --- 7.79762330399978 --- --- --- --- 7.46554327011108 0.957412660121918 3.38270473480225 4.66494607925415 0.149657994508743 0.601073980331421 0.334473013877869 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16A3.01 /GEN=spn3 /DEF=septin (predicted) --- --- --- --- --- --- U29889 // Schizosaccharomyces pombe septin homolog (Spn3+) mRNA, complete cds. // gb // 11 // --- /// SPBC16A3.01 // |spn3|SPBC543.01c|septin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.58440068984933 -7.79762330399978 1.0930540197066 -2.20697455302658 -1.60034931664306 Max fold change at or above threshold 3 7.79762330399978 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776985_at SPCC1223.04c.S1 --- 7.79460626066219 --- --- --- --- 0.380541115999222 0.431819409132004 0.688476622104645 2.96616816520691 0.943848013877869 0.870360970497131 0.633789002895355 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1223.04c /DEF=histone lysine methyltransferase (predicted) --- --- --- --- --- --- SPCC1223.04c // |||histone lysine methyltransferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.25979421311613 1.13475099267036 1.89743924291954 1.80920429661549 7.79460626066219 Max fold change at or above threshold 1 7.79460626066219 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771984_at SPAP27G11.14c.S1 --- 7.79156873105619 --- --- --- --- 1.40848195552826 0.30067253112793 0.290081650018692 1.52776002883911 0.665526986122131 0.953857004642487 0.919434010982513 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP27G11.14c /DEF=sequence orphan --- --- --- --- --- --- SPAP27G11.14c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.79156873105619 -4.68443841625486 1.57201344742024 -4.85546726391518 1.08468555301166 Max fold change at or above threshold 0 7.79156873105619 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773784_at SPBC4F6.08c.S1 --- 7.79043330643014 --- --- --- --- 0.782448947429657 4.547034740448 6.09561634063721 0.526514768600464 0.953857004642487 0.665526986122131 0.696289002895355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4F6.08c /GEN=mrlp39 /DEF=mitochondrial ribosomal protein subunit YmL39 --- --- --- --- --- --- SPBC4F6.08c // |mrpl39||mitochondrial ribosomal protein subunit L39|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 5.70857696337751 5.811286161717 5.49565969887978 7.79043330643014 -1.4860911679828 Max fold change at or above threshold 2 7.79043330643014 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771001_at SPAC24H6.06.S1 --- 7.7879775633679 --- --- --- --- 0.457797318696976 0.605618298053741 3.56531524658203 0.595058441162109 0.805419981479645 0.974365234375 0.533936023712158 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24H6.06 /GEN=sld3 /DEF=preinitiation complex component (PMID 12006645) --- --- --- --- --- --- SPAC24H6.06 // |sld3||pre-initiation complex subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.04916105726626 1.32289612306491 4.76669651039321 7.7879775633679 1.29982945914978 Max fold change at or above threshold 1 7.7879775633679 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774655_at SPAC4G8.04.S1 --- 7.78569959413976 --- --- --- --- 2.09228539466858 16.2899055480957 15.5400743484497 2.27558159828186 0.850341975688934 0.219482004642487 0.129638999700546 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G8.04 /DEF=TBC domain protein --- --- --- --- --- --- SPAC4G8.04 // |||GTPase activating protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.68833746349713 7.78569959413976 -1.94966131845529 7.42732056919571 1.08760573680835 Max fold change at or above threshold 2 7.78569959413976 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774960_at YJL116C.S1 Protein that functions with Nca2p to regulate mitochondrial expression of subunits 6 (Atp6p) and 8 (Atp8p ) of the Fo-F1 ATP synthase; member of the SUN family 7.784099823923 1736.17462158203 253.547431945801 NCA3 7005 // mitochondrion organization and biogenesis // inferred from genetic interaction --- --- 241.980026245117 1588.75256347656 1883.5966796875 265.114837646484 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL116C /GEN=NCA3 /DB_XREF=GI:6322345 /SEG=NC_001142:-193780,194793 /DEF=With NCA2, regulates proper expression of subunits 6 (Atp6p) and 8 (Atp8p ) of the Fo-F1 ATP synthase /NOTE=Nca3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence IGI] [pmid 7586026] --- --- --- --- --- --- S0003652 // NCA3 SGDID:S0003652, Chr X from 194793-193780, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024047 // cdna:Genscan chromosome:SGD1:X:193780:194793:-1 // ensembl // 11 // --- /// GENEFINDER00000024313 // cdna:GeneFinder chromosome:SGD1:X:193780:194793:-1 // ensembl // 11 // --- /// YJL116C // cdna:known chromosome:SGD1:X:193780:194793:-1 gene:YJL116C // ensembl // 11 // --- --- No cerevisiae_gene 3.15233532657734 6.56563513993181 1.15085056168644 7.784099823923 1.09560628519782 Max fold change at or above threshold 4 7.784099823923 Max fold change at or above threshold -0.870917765229368 0.687001916087665 1.02807172473539 -0.844155875593692 994.861026763916 864.46853029863 0.868933958656088 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776168_at SPBC1539.09c.S1 --- 7.78327233195094 --- --- --- --- 1.53691816329956 11.9622526168823 6.31317949295044 4.10164451599121 0.525390625 0.0375977009534836 0.171387001872063 0.149657994508743 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1539.09c /GEN=trp1 /DEF=anthranilate synthase (component II) --- --- --- --- --- --- Y09137 // S.pombe trp-1 mRNA. // gb // 11 // --- /// SPBC1539.09c // |trp1||anthranilate synthase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.03272822154469 7.78327233195094 1.31765840322095 4.1076874772544 2.66874620518865 Max fold change at or above threshold 3 7.78327233195094 Max fold change at or above threshold APPAAA No 4 0 APAA 3 1 0 No No x = 1
1779203_at SPAC18G6.10.S1 --- 7.77950993601087 --- --- --- --- 0.403200745582581 0.416290640830994 3.13670420646667 1.87613415718079 0.943848013877869 0.888427972793579 0.366210997104645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18G6.10 /DEF=hypothetical protein --- --- --- --- --- --- SPAC18G6.10 // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.75027444399406 1.03246495794421 2.23219188875712 7.77950993601087 4.65310190453636 Max fold change at or above threshold 1 7.77950993601087 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778628_at SPCC1223.03c.S1 --- 7.77919425257707 --- --- --- --- 1.24779939651489 9.70687389373779 7.01527404785156 6.98426342010498 0.533936023712158 0.334473013877869 0.274170011281967 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1223.03c /GEN=gut2 /DEF=glycerol-3-phosphate dehydrogenase --- --- --- --- --- --- SPCC1223.03c // |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.25657907501665 7.77919425257707 -1.35398667602499 5.62211687827807 5.5972646241151 Max fold change at or above threshold 3 7.77919425257707 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774657_at SPBC543.08.S1 --- 7.77763259435787 --- --- --- --- 3.7944495677948 0.487866908311844 1.29871833324432 2.51474571228027 0.62548828125 0.904784977436066 0.633789002895355 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC543.08 /DEF=involved in inositol phospholipid biosynthesis (predicted) --- --- --- --- --- --- SPBC543.08 // |||phosphoinositide biosynthesis protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.95581587012905 -7.77763259435787 -2.50014982762558 -2.92168784459668 -1.50888002284499 Max fold change at or above threshold 2 7.77763259435787 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771210_at SPAC869.06c.S1 --- 7.77563901164357 --- --- --- --- 3.55508279800415 6.27515697479248 7.38925123214722 4.74422216415405 0.274170011281967 0.171387001872063 0.0375977009534836 0.149657994508743 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC869.06c /DEF=hypothetical protein --- --- --- --- --- --- SPAC869.06c // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.17717099035899 1.76512259526428 -7.77563901164357 2.0785032731996 1.33448992153361 Max fold change at or above threshold 4 7.77563901164357 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1778718_at SPCC18.14c.S1 --- 7.77292984568537 --- --- --- --- 0.787193417549133 2.15815258026123 1.73423659801483 1.01984930038452 0.805419981479645 0.932372987270355 0.916015625 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18.14c /GEN=rpp0 /DEF=60S acidic ribosomal protein (predicted) --- --- --- --- --- --- SPCC18.14c // |rpp0||60S acidic ribosomal protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.29836333433138 2.74157853984663 7.77292984568537 2.20306288054878 1.29555110300559 Max fold change at or above threshold 0 7.77292984568537 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776289_s_at SPAC19B12.13.S1 --- 7.77016479025612 --- --- --- --- 0.866206526756287 5.18726825714111 6.73056745529175 0.655890107154846 0.953857004642487 0.633789002895355 0.601073980331421 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19B12.13 /GEN=cox1102 /DEF=involved in cytochrome c oxidase biogenesis (predicted) --- --- --- --- --- --- SPAC19B12.13 // |cox1102|cox11-b, SPAPB8E5.01|mitochondrial inner membrane protein Cox11 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPAC1420.04c // |cox1101|SPAPB17E12.01c|cytochrome c oxidase assembly protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.27655232046937 5.98848899992252 -1.5900912463507 7.77016479025612 -1.3206580146692 Max fold change at or above threshold 2 7.77016479025612 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773083_at SPAC1F3.03.S1 --- 7.76857397843806 --- --- --- --- 0.460399001836777 2.33161878585815 3.57664370536804 1.30863428115845 0.870360970497131 0.888427972793579 0.753906011581421 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F3.03 /DEF=WD repeat protein --- --- --- --- --- --- SPAC1F3.03 // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.56110696577716 5.06434370308382 1.04278409704755 7.76857397843806 2.84239165579771 Max fold change at or above threshold 1 7.76857397843806 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771597_at SPAPB18E9.05c.S1 --- 7.76654910237244 --- --- --- --- 6.44494962692261 0.829834401607513 6.87539196014404 1.77805662155151 0.274170011281967 0.780517995357513 0.129638999700546 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB18E9.05c /DEF=dubious --- --- --- --- --- --- SPAPB18E9.05c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.19982996835675 -7.76654910237244 -1.21913918522663 1.06678754034374 -3.62471562986493 Max fold change at or above threshold 2 7.76654910237244 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775308_at YEL035C.S1 Protein of unknown function; transcription may be regulated by Gcr1p 7.76522334700434 153.727767944336 18.9753465652466 UTR5 --- --- --- 22.7548847198486 130.758773803711 176.696762084961 15.1958084106445 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL035C /GEN=UTR5 /DB_XREF=GI:6320800 /SEG=NC_001137:-85045,85545 /DEF=Protein of unknown function; transcription may be regulated by Gcr1p /NOTE=Utr5p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000761 // UTR5 SGDID:S0000761, Chr V from 85545-85045, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S66120 // UTR5 [Saccharomyces cerevisiae, mRNA, 991 nt]. // gb // 10 // --- /// YEL035C // cdna:known chromosome:SGD1:V:85045:85545:-1 gene:YEL035C // ensembl // 11 // --- --- No cerevisiae_gene 1.49983508119328 5.74640458141511 -1.64240274775645 7.76522334700434 -1.49744482852976 Max fold change at or above threshold 4 7.76522334700434 Max fold change at or above threshold -0.794091701160656 0.554485018280887 1.12808382161628 -0.888477138736514 86.3515572547913 80.0873154095286 0.927456527196387 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773821_at SPBC21.04.S1 --- 7.76144582748266 --- --- --- --- 7.94267559051514 2.91113686561584 1.77871513366699 3.25552177429199 0.171387001872063 0.432372987270355 0.5 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21.04 /GEN=sep15 /DEF=RNA polymerase II holoenzyme component (PMID 10625684) --- --- --- --- --- --- SPBC21.04 // |med8|sep15|mediator complex subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.72613149088265 -2.72837587415694 -7.76144582748266 -4.46540058055308 -2.43975501968267 Max fold change at or above threshold 3 7.76144582748266 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779719_at SPBC582.10c.S1 --- 7.76083479541381 --- --- --- --- 0.328989744186401 2.55323505401611 1.17192530632019 0.876851797103882 0.962401986122131 0.805419981479645 0.904784977436066 0.981445014476776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC582.10c /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPBC582.10c // |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.19540171159439 7.76083479541381 2.58970307627531 3.56219404108899 2.66528611483727 Max fold change at or above threshold 1 7.76083479541381 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775761_at SPCC1450.11c.S1 --- 7.75630642574071 --- --- --- --- 0.564024984836578 2.95333385467529 1.68842089176178 1.49741339683533 0.725830018520355 0.5 0.432372987270355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1450.11c /GEN=cek1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPCC1450.11c // |cek1||serine/threonine protein kinase Cek1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.12716024241953 5.23617558454613 7.75630642574071 2.99352145233599 2.65487068320066 Max fold change at or above threshold 1 7.75630642574071 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770197_at SPBC31F10.04c.S1 --- 7.75577858201054 --- --- --- --- 3.13366842269897 0.404043048620224 4.1513466835022 3.24940538406372 0.303710997104645 0.601073980331421 0.303710997104645 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31F10.04c /GEN=srb4 /DEF=RNA polymerase II holoenzyme component (PMID 10625684) --- --- --- --- --- --- SPBC31F10.04c // |srb4||RNA polymerase II holoenzyme component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.0047597737655 -7.75577858201054 -1.26935525227401 1.32475620376157 1.03693337831354 Max fold change at or above threshold 3 7.75577858201054 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770681_at SPAC343.10.S1 --- 7.75562106234393 --- --- --- --- 4.76964092254639 0.61499148607254 4.59298658370972 2.23926043510437 0.533936023712158 0.718505859375 0.432372987270355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC343.10 /GEN=met11 /DEF=methylenetetrahydrofolate reductase (PMID 1211238) --- --- --- --- --- --- SPAC343.10 // |met11|mthfr2|methylenetetrahydrofolate reductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- D89118 // gb // 2 // Cross Hyb Matching Probes No No -4.48481537398058 -7.75562106234393 -7.04640212237506 -1.03846175807768 -2.13000723264424 Max fold change at or above threshold 2 7.75562106234393 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772575_at SPAC15A10.03c.S1 --- 7.7535404675525 --- --- --- --- 0.329004913568497 0.907028913497925 2.55095291137695 2.12284469604492 0.994140982627869 0.919434010982513 0.932372987270355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15A10.03c /GEN=rhp54 /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPAC15A10.03c // |rhp54|rad54|DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.65606984980307 2.75688561505051 3.84643427784752 7.7535404675525 6.45231912502413 Max fold change at or above threshold 1 7.7535404675525 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779828_at SPAC1D4.11c.S1 --- 7.75310092051154 --- --- --- --- 6.25414085388184 7.85921669006348 11.1877059936523 3.19394397735596 0.366210997104645 0.366210997104645 0.111571997404099 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1D4.11c /GEN=lkh1 /DEF=dual specificity protein kinase --- --- --- --- --- --- AF334941 // Schizosaccharomyces pombe LAMMER kinase-like protein mRNA, complete cds. // gb // 11 // --- /// SPAC1D4.11c // |lkh1|kic1|dual specificity protein kinase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.16725560970244 1.25664209899996 -7.75310092051154 1.78884778181936 -1.95812478184392 Max fold change at or above threshold 4 7.75310092051154 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770606_at SPCC550.12.S1 --- 7.74274008469878 --- --- --- --- 0.639685988426209 1.51576912403107 4.95292234420776 1.50733971595764 0.665526986122131 0.696289002895355 0.303710997104645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC550.12 /GEN=arp6 /DEF=actin-like protein --- --- --- --- --- --- SPCC550.12 // |arp6||actin-like protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.40956285553221 2.36955186053121 4.34955381726867 7.74274008469878 2.35637444500869 Max fold change at or above threshold 1 7.74274008469878 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773592_at SPBC4F6.16c.S1 --- 7.73683191813951 --- --- --- --- 3.07465291023254 0.481425672769547 1.41106033325195 2.02805113792419 0.633789002895355 0.696289002895355 0.888427972793579 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4F6.16c /DEF=oxidoreductase --- --- --- --- --- --- SPBC4F6.16c // |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.73683191813951 -6.38655785127676 1.09330864563037 -2.17896629773912 -1.51606281160129 Max fold change at or above threshold 1 7.73683191813951 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772841_at SPCC191.02c.S1 --- 7.7366457632835 --- --- --- --- 1.46118950843811 11.304705619812 8.39231300354004 8.18546295166016 0.466064006090164 0.0952147990465164 0.219482004642487 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC191.02c /DEF=acetyl-CoA ligase (predicted) --- --- --- --- --- --- D89121 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0447. // gb // 11 // --- /// SPCC191.02c // ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.44152086430456 7.7366457632835 5.2315086805904 5.74348019546809 5.60191741344333 Max fold change at or above threshold 3 7.7366457632835 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772759_at SPCC1450.05c.S1 --- 7.7357024060271 --- --- --- --- 0.286777853965759 0.69125771522522 2.21842813491821 0.261846631765366 0.753906011581421 0.828612983226776 0.466064006090164 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1450.05c /GEN=rox3 /DEF=RNA polymerase II holoenzyme component (PMID 11572939) --- --- --- --- --- --- SPCC1450.05c // |rox3|med19|RNA polymerase II holoenzyme component |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 5.47352896306929 2.41042920736744 -1.33871369285081 7.7357024060271 -1.09521307198916 Max fold change at or above threshold 0 7.7357024060271 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773701_at SPAC17H9.04c.S1 --- 7.73263030937507 --- --- --- --- 2.83035826683044 13.3299722671509 21.8861141204834 6.50120973587036 0.466064006090164 0.334473013877869 0.111571997404099 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17H9.04c /DEF=RNA-binding protein --- --- --- --- --- --- SPAC17H9.04c // |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.73184598626799 4.70964132822604 4.58817174039453 7.73263030937507 2.2969564708678 Max fold change at or above threshold 4 7.73263030937507 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1776545_at SPBC1347.02.S1 --- 7.72524488842686 --- --- --- --- 5.91984796524048 1.31330668926239 5.67933320999146 4.03344297409058 0.334473013877869 0.62548828125 0.334473013877869 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1347.02 /GEN=fkbp39 /DEF=peptidyl-prolyl cis-trans isomerase --- --- --- --- --- --- SPBC1347.02 // |fkbp39||peptidyl-prolyl cis-trans isomerase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 9 // --- --- No No -7.72524488842686 -4.50758989780622 1.27190935737213 -1.04234911852432 -1.46769100326136 Max fold change at or above threshold 3 7.72524488842686 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777732_at SPAC23G3.09.S1 --- 7.72503128472246 --- --- --- --- 15.1786470413208 2.13002395629883 7.40876531600952 1.9648654460907 0.018554700538516 0.665526986122131 0.432372987270355 0.466064006090164 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23G3.09 /GEN=taf4 /DEF=transcription factor TFIID complex --- --- --- --- --- --- SPAC23G3.09 // |taf4||transcription factor TFIID complex subunit Taf4|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.91197633689828 -7.12604522424974 -5.12410718892152 -2.04874178002662 -7.72503128472246 Max fold change at or above threshold 2 7.72503128472246 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1775045_at SPAC26H5.06.S1 --- 7.72483216984852 --- --- --- --- 3.30230689048767 0.840861916542053 3.99022126197815 0.496068745851517 0.696289002895355 0.953857004642487 0.725830018520355 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26H5.06 /GEN=pot1 /DEF=telomere end-binding protein (PMID 12463756) --- --- --- --- --- --- SPAC26H5.06 // |pot1||telomere end-binding protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.72483216984852 -3.92728797145199 -2.49709994220076 1.20831327744615 -6.65695413811883 Max fold change at or above threshold 2 7.72483216984852 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778749_at SPAC806.05.S1 --- 7.72193866573255 --- --- --- --- 6.86659526824951 1.6532541513443 0.889232039451599 4.55857276916504 0.334473013877869 0.601073980331421 0.696289002895355 0.239013671875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC806.05 /DEF=hypothetical protein --- --- --- --- --- --- SPAC806.05 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.27558578333807 -4.15338153705292 -2.87539577067869 -7.72193866573255 -1.50630375250261 Max fold change at or above threshold 2 7.72193866573255 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769763_at SPAC9G1.04.S1 --- 7.72139937958399 --- --- --- --- 0.623296320438385 0.755003392696381 4.01046705245972 3.29454827308655 0.904784977436066 0.753906011581421 0.432372987270355 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9G1.04 /GEN=oxa101 /DEF=involved in protein targeting --- --- --- --- --- --- X94123 // S.pombe mRNA for oxa1Sp1 protein. // gb // 11 // --- /// SPAC9G1.04 // |oxa101|oxa1, oxa1-1, oxa1sp1|OXA1/oxaA family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.13273209394849 1.21130731554032 7.72139937958399 6.43428642357302 5.28568541968832 Max fold change at or above threshold 2 7.72139937958399 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775447_at SPBC16G5.10.S1 --- 7.72007952224462 --- --- --- --- 0.920068264007568 7.10300016403198 1.7672176361084 0.754849314689636 0.932372987270355 0.466064006090164 0.850341975688934 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16G5.10 /DEF=exosome (RNase complex) (predicted) --- --- --- --- --- --- SPBC16G5.10 // |||exosome |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.01727338354763 7.72007952224462 -1.58628779681782 1.92074621551544 -1.21887672957067 Max fold change at or above threshold 1 7.72007952224462 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776701_at SPAC1B2.03c.S1 --- 7.7189158118919 --- --- --- --- 1.09171485900879 8.42685508728027 1.64934897422791 1.59313213825226 0.696289002895355 0.129638999700546 0.780517995357513 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B2.03c /DEF=GNS1SUR4 family protein --- --- --- --- --- --- SPAC1B2.03c // |||GNS1/SUR4 family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.00189998480012 7.7189158118919 2.41543495238245 1.51078732749448 1.45929326243551 Max fold change at or above threshold 1 7.7189158118919 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777560_at SPBC649.03.S1 --- 7.71425297693823 --- --- --- --- 2.8732635974884 0.506788909435272 3.43876957893372 3.63323497772217 0.633789002895355 0.56787109375 0.129638999700546 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC649.03 /GEN=rhp14 /DEF=XP-A family --- --- --- --- --- --- SPBC649.03 // |rhp14||XP-A family homolg Rhp14|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -7.71425297693823 -5.66954711122261 1.74206057234626 1.19681660323113 1.26449761897867 Max fold change at or above threshold 3 7.71425297693823 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1771263_at SPBC1604.21c.S1 --- 7.71167763064618 --- --- --- --- 6.80814743041992 2.88361525535584 7.78626394271851 0.882836103439331 0.219482004642487 0.633789002895355 0.24609400331974 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1604.21c /GEN=ptr3 /DEF=ubiquitin activating enzyme (E1) --- --- --- --- --- --- SPBC1604.21c // |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.66233753872658 -2.36097635347674 -1.96067531607206 1.14366852690766 -7.71167763064618 Max fold change at or above threshold 3 7.71167763064618 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770849_at SPAC6F12.12.S1 --- 7.70842997053567 --- --- --- --- 8.82666492462158 15.9255847930908 5.73614311218262 1.14506649971008 0.432372987270355 0.274170011281967 0.366210997104645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F12.12 /GEN=par2 /DEF=protein phosphatase regulatory subunit (PMID 10757751) --- --- --- --- --- --- D89107 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0238. // gb // 11 // --- /// SPAC6F12.12 // |par2|pbp2|protein phosphatase regulatory subunit |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.86587472305493 1.80425845198532 -1.92965236802509 -1.53878045787861 -7.70842997053567 Max fold change at or above threshold 3 7.70842997053567 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779442_at SPBC32H8.11.S1 --- 7.68840933235947 --- --- --- --- 6.39399290084839 8.19923400878906 6.81529426574707 2.25696444511414 0.111571997404099 0.366210997104645 0.0805663987994194 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32H8.11 /GEN=mei4 /DEF=transcription factor (meiotic) (PMID 9528784) --- --- --- --- --- --- SPBC32H8.11 // |mei4||meiotic forkhead transcription factor Mei4 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.43113159952617 1.28233392434658 -7.68840933235947 1.06589018340054 -2.83300559505493 Max fold change at or above threshold 3 7.68840933235947 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775945_at SPAC8F11.05c.S1 --- 7.68725542235644 --- --- --- --- 1.93275856971741 14.857608795166 11.3322830200195 7.32961463928223 0.665526986122131 0.24609400331974 0.111571997404099 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8F11.05c /DEF=hypothetical protein --- --- --- --- --- --- SPAC8F11.05c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.70298302230399 7.68725542235644 2.25466358982342 5.86326880013599 3.79230740668965 Max fold change at or above threshold 3 7.68725542235644 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Bs-dap-5_at AFFX-r2-Bs-dap-5 --- 7.68637876914186 --- --- --- --- 0.511342823505402 1.24789130687714 0.597051799297333 0.192312240600586 0.943848013877869 0.601073980331421 0.850341975688934 0.995850026607513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1439-1846 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. --- --- --- --- --- --- AFFX-r2-Bs-dap-5 // --- // unknown // --- // --- /// AFFX-r2-Bs-dap-5 // --- // unknown // --- // --- /// AFFX-r2-Bs-dap-5 // --- // unknown // --- // --- /// AFFX-r2-Bs-dap-5 // --- // unknown // --- // --- /// AFFX-r2-Bs-dap-5 // --- // gb // --- // --- /// L38424 // Bacillus subtilis /REF=L38424 /DEF=B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1439-1846 of L38424 /LEN=1931 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-r2-Bs-dap-5 // B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1439-1846 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // --- // --- /// AFFX-r2-Bs-dap-5 // B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1439-1846 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-dap-5 // --- // unknown // --- // --- /// AFFX-r2-Bs-dap-5 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-5 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-dap-5 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-5 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-5 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-5 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-5 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-5 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-5 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-5 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-5 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-5 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-5 // --- // affx // --- // --- 50812173 // gb // 11 // Negative Strand Matching Probes AFFX_control No -1.52051862305024 2.44042010470096 7.68637876914186 1.16761548583858 -2.65891979578883 Max fold change at or above threshold 0 7.68637876914186 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774456_at SPBC3D6.08c.S1 --- 7.68277072180457 --- --- --- --- 1.09493494033813 0.180731251835823 2.7627100944519 0.16390435397625 0.633789002895355 0.997070014476776 0.366210997104645 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3D6.08c /DEF=small nuclear ribonucleoprotein (snRNP) --- --- --- --- --- --- SPBC3D6.08c // |||small nuclear ribonucleoprotein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.68277072180457 -6.0583597425241 -2.78255974999623 2.5231728321673 -6.68032858051345 Max fold change at or above threshold 1 7.68277072180457 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773516_at SPBC24C6.07.S1 --- 7.68216194937983 --- --- --- --- 4.01538372039795 2.63320517539978 2.57050323486328 0.522689282894135 0.567627012729645 0.633789002895355 0.366210997104645 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC24C6.07 /GEN=cdc14 /DEF=SIN component --- --- --- --- --- --- SPBC24C6.07 // |cdc14||SIN component|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.37116983530309 -1.52490347425674 -2.24447975329266 -1.56210024011564 -7.68216194937983 Max fold change at or above threshold 3 7.68216194937983 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774875_at SPBP4H10.15.S1 --- 7.67816688222483 --- --- --- --- 16.5716075897217 9.05317974090576 6.60022354125977 3.92922329902649 0.111571997404099 0.0952147990465164 0.219482004642487 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP4H10.15 /DEF=aconitate hydratase (predicted) --- --- --- --- --- --- SPBP4H10.15 // |||aconitate hydratase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.67816688222483 -1.83047371906743 -1.51153410283024 -2.51076459549106 -4.21752756933603 Max fold change at or above threshold 4 7.67816688222483 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777577_at SPBC1921.07c.S1 --- 7.67725505808271 --- --- --- --- 1.10029053688049 0.246532693505287 4.56208562850952 0.381971478462219 0.533936023712158 0.805419981479645 0.194580003619194 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1921.07c /DEF=hypothetical protein --- --- --- --- --- --- SPBC1921.07c // ||SPBC21D10.13|SAGA complex associated protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.17584404434888 -4.46306135399805 -7.67725505808271 4.14625544398827 -2.88055679264368 Max fold change at or above threshold 1 7.67725505808271 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772932_at SPBC409.09c.S1 --- 7.67682649746201 --- --- --- --- 3.05005216598511 1.58529269695282 2.8464879989624 4.75582218170166 0.601073980331421 0.780517995357513 0.567627012729645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC409.09c /DEF=conserved fungal protein --- --- --- --- --- --- SPBC409.09c // |mis13||kinetochore protein Mis13|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.67682649746201 -1.92396784003849 2.06628517219702 -1.07151414904855 1.55925929226382 Max fold change at or above threshold 3 7.67682649746201 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775639_at SPAC5H10.07.S1 --- 7.66857028331183 --- --- --- --- 0.315836727619171 2.42201614379883 0.746882855892181 1.49464857578278 0.953857004642487 0.665526986122131 0.805419981479645 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5H10.07 /DEF=sequence orphan --- --- --- --- --- --- SPAC5H10.07 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.19652487581765 7.66857028331183 6.40747436099947 2.36477518470479 4.73234568712031 Max fold change at or above threshold 0 7.66857028331183 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769713_at YOL162W.S1 Hypothetical protein, member of the Dal5p subfamily of the major facilitator family 7.66162183316104 2.82452669739723 5.55181932449341 --- 6810 // transport // inferred from sequence similarity 16020 // membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity 6.71440649032593 4.7726845741272 0.876368820667267 4.38923215866089 0.171387001872063 0.398925989866257 0.633789002895355 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL162W /GEN=AAD15 /DB_XREF=GI:6324411 /SEG=NC_001147:+10118,10765 /DEF=Hypothetical ORF, member of the Dal5p subfamily of the major facilitator family /NOTE=Yol162wp; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 10869563]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 10869563]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 10869563] --- --- --- --- --- S0005522 // span:2-24,28-50,57-79,89-111,124-141,156-178 // numtm:6 S0005522 // YOL162W SGDID:S0005522, Chr XV from 10118-10765, Uncharacterized ORF // sgd // 11 // --- /// YOL162W // cdna:known chromosome:SGD1:XV:10118:10765:1 gene:YOL162W // ensembl // 11 // --- --- No cerevisiae_gene -2.14002740322074 -1.40684061266584 -3.75751260370105 -7.66162183316104 -1.5297451234328 Max fold change at or above threshold 3 7.66162183316104 Max fold change at or above threshold 1.03909554651376 0.240422497423715 -1.36221810578145 0.0827000618439764 4.18817301094532 2.43118497414054 0.58048819086196 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772431_at SPBC19F8.08.S1 --- 7.65574130144933 --- --- --- --- 0.716162919998169 0.80059427022934 1.34505093097687 2.76134157180786 0.525390625 0.805419981479645 0.725830018520355 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19F8.08 /GEN=rps401 /DEF=40S ribosomal protein S4AS4.1 --- --- --- --- --- --- SPBC19F8.08 // |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal protein S4|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- U97374 // gb // 1 // Cross Hyb Matching Probes /// U97383 // gb // 1 // Cross Hyb Matching Probes No No 4.54994315543119 1.11789405437437 7.65574130144933 1.87813539826986 3.85574496347133 Max fold change at or above threshold 1 7.65574130144933 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779125_at SPCC126.07c.S1 --- 7.65475393040229 --- --- --- --- 5.69841527938843 0.744428277015686 2.50765419006348 0.903191447257996 0.24609400331974 0.696289002895355 0.432372987270355 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC126.07c /DEF=zinc finger protein --- --- --- --- --- --- SPCC126.07c // |||zinc finger protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.5848611978295 -7.65475393040229 -6.77245452989574 -2.27240873241943 -6.30919977894862 Max fold change at or above threshold 2 7.65475393040229 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778714_at SPCC1919.01.S1 --- 7.65455074702803 --- --- --- --- 7.19276285171509 5.20310354232788 4.77613353729248 3.74126100540161 0.24609400331974 0.5 0.466064006090164 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1919.01 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPCC1919.01 // ||SPCC830.12|serine/threonine protein kinase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -7.65455074702803 -1.38239856139727 -2.67347646813248 -1.50598026532411 -1.92255040247933 Max fold change at or above threshold 4 7.65455074702803 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779107_at YBR101C.S1 Hsp70 (Ssa1p) nucleotide exchange factor, cytosolic homolog of Sil1p, which is the nucleotide exchange factor for BiP (Kar2p) in the endoplasmic reticulum 7.65241522538806 7451.33276367188 1287.07904052734 FES1 6412 // protein biosynthesis // inferred from physical interaction /// 6412 // protein biosynthesis // inferred from mutant phenotype 5829 // cytosol // inferred from direct assay /// 5830 // cytosolic ribosome (sensu Eukaryota) // inferred from physical interaction 774 // adenyl-nucleotide exchange factor activity // inferred from direct assay /// 774 // adenyl-nucleotide exchange factor activity // inferred from physical interaction 1246.08764648438 9535.580078125 5367.08544921875 1328.07043457031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR101C /GEN=FES1 /DB_XREF=GI:6319577 /SEG=NC_001134:-443778,444650 /DEF=Hsp70 (Ssa1p) nucleotide exchange factor, cytosolic homolog of Sls1p, which is the nucleotide exchange factor for BiP (Kar2p) in the endoplasmic reticulum /NOTE=Fes1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 12052876]; go_component: cytosolic ribosome (sensu Eukarya) [goid GO:0005830] [evidence IPI] [pmid 12052876]; go_function: adenyl-nucleotide exchange factor activity [goid GO:0000774] [evidence IDA,IPI] [pmid 12052876]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP,IPI] [pmid 12052876] --- --- --- --- --- --- S0000305 // FES1 SGDID:S0000305, Chr II from 444687-443815, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021219 // cdna:Genscan chromosome:SGD1:II:443815:444687:-1 // ensembl // 11 // --- /// GENEFINDER00000022134 // cdna:GeneFinder chromosome:SGD1:II:443815:444633:-1 // ensembl // 11 // --- /// YBR101C // cdna:known chromosome:SGD1:II:443815:444687:-1 gene:YBR101C // ensembl // 11 // --- --- No cerevisiae_gene 2.82674719213946 7.65241522538806 1.6029969778457 4.30714923172625 1.0657921521951 Max fold change at or above threshold 4 7.65241522538806 Max fold change at or above threshold -0.791660859756382 1.30959377367852 0.252946611542901 -0.770879525465039 4369.20590209961 3945.02041767773 0.902914741505307 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774943_at SPBC23G7.05.S1 --- 7.6461011673758 --- --- --- --- 7.48755359649658 7.0025053024292 9.72963619232178 0.979264259338379 0.303710997104645 0.466064006090164 0.274170011281967 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23G7.05 /GEN=sui1 /DEF=translation initiation factor --- --- --- --- --- --- SPBC23G7.05 // |sui1|psu1|translation initiation factor eIF1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 9 // --- --- No No -1.52007829558034 -1.0692678224605 -2.38095886489378 1.29944127503465 -7.6461011673758 Max fold change at or above threshold 3 7.6461011673758 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775065_at SPBC1685.14c.S1 --- 7.64470387790764 --- --- --- --- 0.410464912652969 0.368478447198868 3.13788270950317 1.75313651561737 0.991943001747131 0.995850026607513 0.753906011581421 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1685.14c /DEF=conserved protein (mainly fungal and plant) --- --- --- --- --- --- SPBC1685.14c // |||conserved protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 2.17559707939865 -1.11394551234483 1.01895328346203 7.64470387790764 4.27109957897808 Max fold change at or above threshold 1 7.64470387790764 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774408_at SPAC1250.03.S1 --- 7.63775498108657 --- --- --- --- 9.33264827728271 9.74651622772217 4.46202850341797 1.22190988063812 0.274170011281967 0.334473013877869 0.219482004642487 0.525634765625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1250.03 /GEN=ubc14 /DEF=ubiquitin conjugating enzyme --- --- --- --- --- --- SPAC1250.03 // |ubc14||ubiquitin conjugating enzyme|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.20468253366907 1.04434624965423 -1.59222710652808 -2.09157074414334 -7.63775498108657 Max fold change at or above threshold 3 7.63775498108657 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776436_at SPBP8B7.21.S1 --- 7.63355657291098 --- --- --- --- 1.5465624332428 1.98837542533875 11.8057718276978 0.932996213436127 0.274170011281967 0.533936023712158 0.149657994508743 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.21 /GEN=ubp3 /DEF=ubiquitin C-terminal hydrolase activity --- --- --- --- --- --- SPBP8B7.21 // |ubp3||ubiquitin C-terminal hydrolase activity|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.88372611073676 1.28567420402781 3.05141293340443 7.63355657291098 -1.65762991421688 Max fold change at or above threshold 1 7.63355657291098 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774103_at SPAC3H1.05.S1 --- 7.62885856840104 --- --- --- --- 1.07325077056885 1.4125155210495 8.18767833709717 1.28708434104919 0.665526986122131 0.601073980331421 0.0561522990465164 0.432372987270355 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H1.05 /DEF=CAAX prenyl protease (predicted) --- --- --- --- --- --- SPAC3H1.05 // |||CAAX prenyl protease |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.78989368082923 1.31610948697557 4.05676412960898 7.62885856840104 1.19923914926892 Max fold change at or above threshold 1 7.62885856840104 Max fold change at or above threshold APAPMA No 4 0 AAMA 3 0 1 No No x = 1
1769723_at YGR174W-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 7.62273142379744 0.834878191351891 1.34884610772133 --- --- --- --- 2.14653730392456 0.28159686923027 1.38815951347351 0.551154911518097 0.432372987270355 0.5 0.24609400331974 0.39892578125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR174W-A /GEN=CBP4 /DB_XREF=GI:33438799 /SEG=NC_001139:+846658,846744 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ygr174w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028639 // YGR174W-A SGDID:S0028639, Chr VII from 846660-846746, Uncharacterized ORF // sgd // 11 // --- /// YGR174W-A // cdna:known chromosome:SGD1:VII:846660:846746:1 gene:YGR174W-A // ensembl // 11 // --- GENEFINDER00000021559 // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene -1.11510512690639 -7.62273142379744 1.54514302089361 -1.54631890866303 -3.89461702883524 Max fold change at or above threshold 0 7.62273142379744 Max fold change at or above threshold 1.24611611549093 -0.957341812226952 0.350080229578859 -0.638854532842833 1.09186214953661 0.846369885821151 0.775161851869628 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772297_at SPAC343.04c.S1 --- 7.61828425604228 --- --- --- --- 0.657164931297302 0.404481709003448 0.532676756381989 0.245919764041901 0.828612983226776 0.943848013877869 0.805419981479645 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC343.04c /DEF=WD repeat protein --- --- --- --- --- --- SPAC343.04c // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- AB001022 // gb // 9 // Negative Strand Matching Probes No No 7.61828425604228 -1.62470864978396 -6.57164931297302 -1.23370303551605 -2.67227375505017 Max fold change at or above threshold 0 7.61828425604228 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775783_at YBR221W-A.S1 Identified by expression profiling and mass spectrometry 7.61476537698525 6.66479182243347 38.8095703125 --- --- --- --- 36.9884147644043 4.8574595451355 8.47212409973145 40.6307258605957 0.007568359375 0.303710997104645 0.303710997104645 0.00585938012227416 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR221W-A /GEN=PDB1 /DB_XREF=GI:33438772 /SEG=NC_001134:+666495,666599 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Ybr221w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028817 // YBR221W-A SGDID:S0028817, Chr II from 666533-666637, Uncharacterized ORF // sgd // 10 // --- /// YBR221W-A // cdna:known chromosome:SGD1:II:666533:666637:1 gene:YBR221W-A // ensembl // 10 // --- --- No cerevisiae_gene -1.98412075762654 -7.61476537698525 -1.05799911050434 -4.36589624148409 1.09847167334396 Max fold change at or above threshold 4 7.61476537698525 Max fold change at or above threshold 0.763050438845184 -0.957329705215366 -0.763790574967627 0.958069841337809 22.7371810674667 18.6766601150321 0.821414935282166 PPAPAP Called_P_>2EXP 4 0 PAAP 2 2 0 Yes No 1 < x = 2
1776208_at YFR057W.S1 Hypothetical protein 7.61209161242734 32.8923997879028 6.34904479980469 --- --- --- --- 5.04491901397705 27.3824138641357 38.4023857116699 7.65317058563232 0.194580003619194 0.00415039015933871 0.018554700538516 0.018554700538516 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR057W /GEN=HXK1 /DB_XREF=GI:14318582 /SEG=NC_001138:+269048,269503 /DEF=Hypothetical ORF /NOTE=Yfr057wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001953 // YFR057W SGDID:S0001953, Chr VI from 269048-269503, Uncharacterized ORF // sgd // 11 // --- /// YFR057W // cdna:known chromosome:SGD1:VI:269048:269503:1 gene:YFR057W // ensembl // 11 // --- --- No cerevisiae_gene 3.06583369581101 5.42772119597405 1.65820841322492 7.61209161242734 1.5170056376384 Max fold change at or above threshold 4 7.61209161242734 Max fold change at or above threshold -0.910589958951591 0.484893921293219 1.17334144762253 -0.747645409964162 19.6207222938538 16.0069888060907 0.81582056798719 APPMPP Called_P_>2EXP 3 0 APPP 1 3 0 Yes Yes 2 < x = 3
1776586_at SPAC1142.04.S1 --- 7.61025541125896 --- --- --- --- 7.19979000091553 12.8545970916748 9.14311027526855 0.946064174175262 0.334473013877869 0.0561522990465164 0.303710997104645 0.567627012729645 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1142.04 /DEF=UPF0120 --- --- --- --- --- --- SPAC1142.04 // |||nucleolar complex protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.4194826636129 1.78541278148949 -4.84420424027571 1.26991346610192 -7.61025541125896 Max fold change at or above threshold 3 7.61025541125896 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1776035_at SPBC21C3.05.S1 --- 7.60999967034054 --- --- --- --- 0.759388208389282 3.64652633666992 1.93005883693695 5.77894401550293 0.601073980331421 0.665526986122131 0.466064006090164 0.55908203125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21C3.05 /GEN=sap62 /DEF=localization spliceosome complex --- --- --- --- --- --- SPBC21C3.05 // |sap62||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.25611871049427 4.80192646710234 -1.01677520024983 2.54159705880968 7.60999967034054 Max fold change at or above threshold 2 7.60999967034054 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776126_at SPBC16A3.13.S1 --- 7.60987513769519 --- --- --- --- 1.04333412647247 1.29324579238892 4.43572902679443 4.09892988204956 0.805419981479645 0.533936023712158 0.303710997104645 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16A3.13 /GEN=meu7 /DEF=alpha-amylase (predicted) --- --- --- --- --- --- AB054318 // Schizosaccharomyces pombe mRNA for Meu7, partial cds. // gb // 11 // --- /// SPBC16A3.13 // |meu7||alpha-amylase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.85173806339946 1.23953176607133 7.60987513769519 4.25149423779676 3.92868380133227 Max fold change at or above threshold 2 7.60987513769519 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1779407_at YJR047C.S1 Translation initiation factor eIF-5A, promotes formation of the first peptide bond; similar to and functionally redundant with Hyp2p; undergoes an essential hypusination modification; expressed under anaerobic conditions 7.60667152520111 282.12663269043 352.627182006836 ANB1 6413 // translational initiation // traceable author statement 5840 // ribosome // traceable author statement 3743 // translation initiation factor activity // traceable author statement 330.392761230469 233.845245361328 330.408020019531 374.861602783203 0.00292969006113708 0.018554700538516 0.00292969006113708 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR047C /GEN=ANB1 /DB_XREF=GI:6322507 /SEG=NC_001142:-524822,525295 /DEF=Translation initiation factor eIF-5A, promotes formation of the first peptide bond; similar to and functionally redundant with Hyp2p; undergoes an essential hypusination modification; expressed under anaerobic conditions /NOTE=Anb1p; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 9841679]; go_function: translation initiation factor activity [goid GO:0003743] [evidence TAS] [pmid 9841679]; go_process: translational initiation [goid GO:0006413] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0003808 // ANB1 SGDID:S0003808, Chr X from 525295-524822, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024170 // cdna:Genscan chromosome:SGD1:X:524822:525295:-1 // ensembl // 11 // --- /// GENEFINDER00000024425 // cdna:GeneFinder chromosome:SGD1:X:524822:525295:-1 // ensembl // 11 // --- /// YJR047C // cdna:known chromosome:SGD1:X:524822:525295:-1 gene:YJR047C // ensembl // 11 // --- --- No cerevisiae_gene 7.60667152520111 -1.41286927052957 -1.26525159507592 1.00004618378746 1.13459387362823 Max fold change at or above threshold 4 7.60667152520111 Max fold change at or above threshold 0.2187486862621 -1.40386036036502 0.21900513044868 0.966106543654244 317.376907348633 59.501403662103 0.18747868003119 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1769439_at SPAC1071.09c.S1 --- 7.60339291885417 --- --- --- --- 1.92185461521149 2.28433513641357 2.34287977218628 2.62118077278137 0.780517995357513 0.466064006090164 0.466064006090164 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1071.09c /DEF=DNAJ domain protein --- --- --- --- --- --- SPAC1071.09c // |||DNAJ domain protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.06135438076107 1.18860975140006 -7.60339291885417 1.21907232401576 1.36388088465939 Max fold change at or above threshold 1 7.60339291885417 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769636_at SPBC776.09.S1 --- 7.60143276665629 --- --- --- --- 3.15766143798828 0.659439206123352 1.05086743831635 0.415403455495834 0.601073980331421 0.828612983226776 0.725830018520355 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC776.09 /GEN=ste13 /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPBC776.09 // |ste13||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.67866425436106 -4.78840416018216 -3.77443248073786 -3.00481423522585 -7.60143276665629 Max fold change at or above threshold 1 7.60143276665629 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773142_at SPBC211.06.S1 --- 7.60054233428655 --- --- --- --- 0.379234343767166 0.296301692724228 2.88238668441772 1.88968217372894 0.805419981479645 0.942626953125 0.149657994508743 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC211.06 /GEN=gfh4 /DEF=gamma tubulin complex (pers. comm. Sri Venkatram) --- --- --- --- --- --- SPBC211.06 // |gfh1||gamma tubulin complex|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.18669129967895 -1.2798925996016 1.26370246333338 7.60054233428655 4.9828877705473 Max fold change at or above threshold 1 7.60054233428655 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776728_at SPAC688.07c.S1 --- 7.59842543397363 --- --- --- --- 0.623466074466705 0.351109176874161 1.08454251289368 2.35735559463501 0.696289002895355 0.888427972793579 0.780517995357513 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC688.07c /DEF=sequence orphan --- --- --- --- --- --- SPAC688.07c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.40215498373417 -1.7757042980684 7.59842543397363 1.73953733380178 3.78104870686256 Max fold change at or above threshold 0 7.59842543397363 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770112_at YDR440W.S1 Nucleosomal histone H3-Lys79 methylase, associates with transcriptionally active genes, functions in gene silencing at telomeres, most likely by directly modulating chromatin structure and Sir protein localization 7.59624291738642 57.1484470367432 415.774948120117 DOT1 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 16571 // histone methylation // inferred from direct assay /// 40020 // regulation of meiosis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 16279 // protein-lysine N-methyltransferase activity // inferred from direct assay 373.595428466797 49.1816062927246 65.1152877807617 457.954467773438 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR440W /GEN=DOT1 /DB_XREF=GI:6320648 /SEG=NC_001136:+1342481,1344229 /DEF=Nucleosomal histone H3-Lys79 methylase, associates with transcriptionally active genes, functions in gene silencing at telomeres, most likely by directly modulating chromatin structure and Sir protein localization /NOTE=Dot1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11029058]; go_function: protein-lysine N-methyltransferase activity [goid GO:0016279] [evidence IDA] [pmid 12080090]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 11029058]; go_process: histone methylation [goid GO:0016571] [evidence IDA] [pmid 12080090]; go_process: regulation of meiosis [goid GO:0040020] [evidence IMP] [pmid 11029058] --- --- --- --- --- --- S0002848 // DOT1 SGDID:S0002848, Chr IV from 1342483-1344231, Verified ORF // sgd // 11 // --- /// GENSCAN00000025446 // cdna:Genscan chromosome:SGD1:IV:1342483:1344231:1 // ensembl // 11 // --- /// YDR440W // cdna:known chromosome:SGD1:IV:1342483:1344231:1 gene:YDR440W // ensembl // 11 // --- --- No cerevisiae_gene -2.14112700256649 -7.59624291738642 -1.05455711827078 -5.73744570898104 1.22580318943635 Max fold change at or above threshold 4 7.59624291738642 Max fold change at or above threshold 0.653022375959814 -0.891816254025194 -0.815941044653292 1.05473492271867 236.46169757843 209.998517565049 0.88808682216026 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778069_at SPBC11B10.09.S1 --- 7.59580090652249 --- --- --- --- 1.10038030147552 8.35826969146729 4.38397073745728 3.71402788162231 0.805419981479645 0.567627012729645 0.696289002895355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11B10.09 /GEN=cdc2 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPBC11B10.09 // |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.60910612343194 7.59580090652249 -2.66315480386349 3.98405054287023 3.37522207244358 Max fold change at or above threshold 3 7.59580090652249 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772040_at SPBC23G7.11.S1 --- 7.59231415345015 --- --- --- --- 6.34075784683228 1.4471732378006 4.7765531539917 1.96313488483429 0.5 0.696289002895355 0.219482004642487 0.525390625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23G7.11 /DEF=DNA-3-methyladenine glycosidase --- --- --- --- --- --- SPBC23G7.11 // |||DNA-3-methyladenine glycosidase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -7.59231415345015 -4.38147809896547 -1.67341743207732 -1.32747561733578 -3.2299145085833 Max fold change at or above threshold 2 7.59231415345015 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774159_at SPCC970.05.S1 --- 7.59113539141942 --- --- --- --- 0.329976201057434 0.245039016008377 0.271576911211014 0.950238227844238 0.828612983226776 0.981445014476776 0.780517995357513 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC970.05 /GEN=rpl3601 /DEF=60S ribosomal protein L36 --- --- --- --- --- --- D88771 // Fission yeast mRNA for ribosomal protein L39, partial cds. // gb // 11 // --- /// SPCC970.05 // |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 7.59113539141942 -1.34662718791751 -1.10795086062551 -1.21503775702436 2.87971746083241 Max fold change at or above threshold 0 7.59113539141942 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769960_at SPAC1F12.05.S1 --- 7.587244566467 --- --- --- --- 6.77387094497681 1.25157749652863 3.60035943984985 3.77028942108154 0.274170011281967 0.753906011581421 0.633789002895355 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F12.05 /DEF=conserved fungal protein --- --- --- --- --- --- SPAC1F12.05 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.10343601681702 -5.41226649070058 -7.587244566467 -1.88144296649984 -1.79664481646973 Max fold change at or above threshold 3 7.587244566467 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772404_at SPBC1685.15c.S1 --- 7.5860011591924 --- --- --- --- 0.656827747821808 0.95479279756546 4.98269605636597 0.322331726551056 0.601073980331421 0.696289002895355 0.466064006090164 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1685.15c /GEN=klp6 /DEF=kinesin-like protein --- --- --- --- --- --- SPBC1685.15c // |klp6|sot2, SPBC649.01c|kinesin-like protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.07034902181458 1.45364260375993 1.28819252648497 7.5860011591924 -2.03773843440686 Max fold change at or above threshold 1 7.5860011591924 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776169_at SPAC30D11.14c.S1 --- 7.5816060732388 --- --- --- --- 5.47745752334595 3.51299166679382 1.928506731987 3.15625786781311 0.696289002895355 0.219482004642487 0.466064006090164 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30D11.14c /DEF=KH domain --- --- --- --- --- --- SPAC30D11.14c // |||KH domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.5816060732388 -1.55920026088335 -1.15805087573667 -2.8402584406342 -1.73542776057811 Max fold change at or above threshold 3 7.5816060732388 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770005_at SPCC622.03c.S1 --- 7.58118434609032 --- --- --- --- 0.155391812324524 1.17805397510529 0.73487377166748 0.343606561422348 0.995850026607513 0.696289002895355 0.888427972793579 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC622.03c /DEF=dubious --- --- --- --- --- --- SPCC622.03c // |||dubious|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 5.24085304341089 7.58118434609032 3.68498436158681 4.72916661871961 2.21122693842293 Max fold change at or above threshold 0 7.58118434609032 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769676_at SPCC31H12.05c.S1 --- 7.58109239083098 --- --- --- --- 7.63658905029297 6.07552146911621 7.43318223953247 1.00732040405273 0.366210997104645 0.212158203125 0.111571997404099 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC31H12.05c /GEN=sds21 /DEF=serinethreonine protein phosphatase --- --- --- --- --- --- SPCC31H12.05c // |sds21||serine/threonine protein phosphatase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -7.44755057034601 -1.25694380130367 -1.43576212327028 -1.02736470117451 -7.58109239083098 Max fold change at or above threshold 3 7.58109239083098 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1775963_at SPAC26H5.09c.S1 --- 7.57543563503367 --- --- --- --- 8.21728897094727 6.74850130081177 20.6522006988525 7.87147283554077 0.194580003619194 0.398925989866257 0.0461426004767418 0.219482004642487 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26H5.09c /DEF=oxidoreductase (predicted) --- --- --- --- --- --- D89186 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1036. // gb // 11 // --- /// SPAC26H5.09c // |||oxidoreductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.57543563503367 -1.21764649729842 1.11255375182268 2.51326207120982 -1.04393283730144 Max fold change at or above threshold 4 7.57543563503367 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1769915_at SPCC306.06c.S1 --- 7.57086537308669 --- --- --- --- 15.1901941299438 10.787073135376 3.95139360427856 2.46077036857605 0.00585938012227416 0.0239257998764515 0.219482004642487 0.149657994508743 P P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC306.06c /DEF=localization ER membrane --- --- --- --- --- --- SPCC306.06c // |||ER membrane protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -7.57086537308669 -1.40818495798716 -4.06863413055727 -3.84426246818235 -6.17294255649454 Max fold change at or above threshold 3 7.57086537308669 Max fold change at or above threshold PAPAAA No 4 0 PPAA 2 2 0 No No 1 < x = 2
1776203_at SPAC2G11.13.S1 --- 7.56722776669148 --- --- --- --- 8.3643045425415 7.41077136993408 1.10533273220062 3.71943068504334 0.194580003619194 0.533936023712158 0.601073980331421 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2G11.13 /DEF=hypothetical protein --- --- --- --- --- --- SPAC2G11.13 // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.06124929616074 -1.12866854541971 -2.19032967916645 -7.56722776669148 -2.24881312513129 Max fold change at or above threshold 3 7.56722776669148 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770015_at YOR011W-A.S1 Identified by fungal homology and RT-PCR 7.56568857812229 22.8175597190857 3.64991354942322 --- --- --- --- 3.94945168495178 29.8803215026855 15.7547979354858 3.35037541389465 0.0375977009534836 0.00195312988944352 0.00195312988944352 0.0375977009534836 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR011W-A /GEN=AUS1 /DB_XREF=GI:33438879 /SEG=NC_001147:+355651,355857 /DEF=Identified by fungal homology and RT-PCR /NOTE=Yor011w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028581 // YOR011W-A SGDID:S0028581, Chr XV from 355651-355857, Uncharacterized ORF // sgd // 11 // --- /// YOR011W-A // cdna:known chromosome:SGD1:XV:355651:355857:1 gene:YOR011W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.12851916238393 7.56568857812229 1.7805159140538 3.98911018345023 -1.17880869963785 Max fold change at or above threshold 4 7.56568857812229 Max fold change at or above threshold -0.743859770244727 1.3337295077873 0.201988208090027 -0.791857945632601 13.2337366342545 12.4812300929356 0.943137258801794 PAPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1776632_at YOL095C.S1 Mitochondrial inner membrane localized ATP-dependent DNA helicase, required for the maintenance of the mitochondrial genome; not required for mitochondrial transcription 7.56557899707635 30.7284231185913 192.795654296875 HMI1 2 // mitochondrial genome maintenance // inferred from mutant phenotype 5759 // mitochondrial matrix // inferred from direct assay 4003 // ATP-dependent DNA helicase activity // inferred from direct assay 171.154586791992 22.6228008270264 38.8340454101563 214.436721801758 0.000244141003349796 0.018554700538516 0.00292969006113708 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL095C /GEN=HMI1 /DB_XREF=GI:6324477 /SEG=NC_001147:-139226,141346 /DEF=Mitochondrial inner membrane localized ATP-dependent DNA helicase, required for the maintenance of the mitochondrial genome; not required for mitochondrial transcription /NOTE=Hmi1p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 10409639]; go_function: ATP-dependent DNA helicase activity [goid GO:0004003] [evidence IDA] [pmid 10669756]; go_process: mitochondrial genome maintenance [goid GO:0000002] [evidence IMP] [pmid 10669756] --- --- --- --- --- --- S0005455 // HMI1 SGDID:S0005455, Chr XV from 141346-139226, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017390 // cdna:Genscan chromosome:SGD1:XV:139226:141346:-1 // ensembl // 11 // --- /// GENEFINDER00000022640 // cdna:GeneFinder chromosome:SGD1:XV:139226:141346:-1 // ensembl // 11 // --- /// YOL095C // cdna:known chromosome:SGD1:XV:139226:141346:-1 gene:YOL095C // ensembl // 11 // --- --- No cerevisiae_gene -2.05857591998545 -7.56557899707635 1.02332815983757 -4.40733343601721 1.25288329001879 Max fold change at or above threshold 4 7.56557899707635 Max fold change at or above threshold 0.622217315112322 -0.933854145920904 -0.764019420782758 1.07565625159134 111.762038707733 95.4530622047019 0.854074096253017 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1776104_at YLR264W.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps28Bp and has similarity to rat S28 ribosomal protein 7.56486476552961 206.941833496094 1354.40447998047 RPS28B 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 1356.75 179.348876953125 234.534790039063 1352.05895996094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR264W /GEN=RPS28B /DB_XREF=GI:6323294 /SEG=NC_001144:+673133,673336 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps28Bp and has similarity to rat S28 ribosomal protein /NOTE=Rps28bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004254 // RPS28B SGDID:S0004254, Chr XII from 673133-673336, Verified ORF // sgd // 11 // --- /// GENSCAN00000018027 // cdna:Genscan chromosome:SGD1:XII:673133:673336:1 // ensembl // 11 // --- /// GENEFINDER00000024583 // cdna:GeneFinder chromosome:SGD1:XII:673133:673336:1 // ensembl // 11 // --- /// YLR264W // cdna:known chromosome:SGD1:XII:673133:673336:1 gene:YLR264W // ensembl // 11 // --- --- No cerevisiae_gene -1.53393959012628 -7.56486476552961 -1.54149942061126 -5.78485605386744 -1.00346955286565 Max fold change at or above threshold 4 7.56486476552961 Max fold change at or above threshold 0.869059854146153 -0.90714771301302 -0.823895171032959 0.861983029899827 780.673156738281 662.873610503746 0.849105166204622 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773137_at SPCC23B6.03c.S1 --- 7.5623817039843 --- --- --- --- 9.26256370544434 2.41801810264587 10.1808891296387 10.6340570449829 0.24609400331974 0.5 0.194580003619194 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC23B6.03c /GEN=tel1 /DEF=phosphotidylinositol kinase --- --- --- --- --- --- SPCC23B6.03c // |tel1||phosphotidylinositol kinase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -7.5623817039843 -3.83064282906275 -5.23471535853717 1.09914376336808 1.14806843797819 Max fold change at or above threshold 3 7.5623817039843 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771618_at SPBC83.05.S1 --- 7.56220133545203 --- --- --- --- 6.00253057479858 1.4180680513382 4.44181871414185 1.73379373550415 0.366210997104645 0.805419981479645 0.533936023712158 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC83.05 /DEF=RNA-binding protein --- --- --- --- --- --- SPBC83.05 // |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.22518310318659 -4.23289317401527 -7.56220133545203 -1.35136775296294 -3.46207882280367 Max fold change at or above threshold 2 7.56220133545203 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771483_at SPBC1734.04.S1 --- 7.56112052696561 --- --- --- --- 0.994727313518524 5.91982173919678 0.763927161693573 1.83084273338318 0.696289002895355 0.633789002895355 0.753906011581421 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1734.04 /DEF=mannosyltransferase complex (predicted) --- --- --- --- --- --- SPBC1734.04 // ||SPBC337.20|mannosyltransferase complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 7.56112052696561 5.95120055390591 1.96423891416705 -1.30212324341667 1.84054736258037 Max fold change at or above threshold 1 7.56112052696561 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776175_at SPAC3H5.04.S1 --- 7.56078676900172 --- --- --- --- 5.94259643554688 1.57130372524261 5.50201654434204 0.785975933074951 0.129638999700546 0.780517995357513 0.432372987270355 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H5.04 /GEN=aar2 /DEF=U1 snRNP component --- --- --- --- --- --- SPAC3H5.04 // |aar2||U5 snRNP component|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.11655160182089 -3.78195274413247 -6.15984255057686 -1.08007607531786 -7.56078676900172 Max fold change at or above threshold 2 7.56078676900172 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774611_at SPAC3H8.10.S1 --- 7.55552384998208 --- --- --- --- 12.6131057739258 13.3619413375854 17.142650604248 5.8965630531311 0.219482004642487 0.0561522990465164 0.0461426004767418 0.171387001872063 A M P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H8.10 /GEN=spo20 /DEF=CRALTRIO domain --- --- --- --- --- --- SPAC3H8.10 // |spo20|sec14|sec14 cytosolic factor family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.49446018148764 1.05936964115592 -7.55552384998208 1.35911415566544 -2.13906061213543 Max fold change at or above threshold 4 7.55552384998208 Max fold change at or above threshold AAMAPA No 4 0 AMPA 2 1 1 No No x = 1
1772712_at YIL140W.S1 Integral plasma membrane protein required for axial budding in haploid cells, localizes to the incipient bud site and bud neck; glycosylated by Pmt4p; potential Cdc28p substrate 7.55463839798198 27.184853553772 184.650016784668 AXL2 282 // bud site selection // traceable author statement /// 7120 // axial bud site selection // traceable author statement 5887 // integral to plasma membrane // traceable author statement /// 5935 // bud neck // inferred from direct assay /// 5940 // septin ring // traceable author statement --- 170.934097290039 31.7433300018311 22.6263771057129 198.365936279297 0.000732421991415322 0.0676269978284836 0.0561522990465164 0.000732421991415322 P A M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL140W /GEN=AXL2 /DB_XREF=GI:6322051 /SEG=NC_001141:+85366,87837 /DEF=Integral plasma membrane protein required for axial budding in haploid cells, localizes to the incipient bud site and bud neck; glycosylated by Pmt4p; potential Cdc28p substrate /NOTE=Axl2p; go_component: bud [goid GO:0005933] [evidence TAS] [pmid 9891811]; go_component: bud neck [goid GO:0005935] [evidence TAS] [pmid 9891811]; go_component: integral to plasma membrane [goid GO:0005887] [evidence TAS] [pmid 9891811]; go_component: septin ring [goid GO:0005940] [evidence TAS] [pmid 9891811]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 9891811]; go_process: axial budding [goid GO:0007120] [evidence TAS] [pmid 9891811]; go_process: bud site selection [goid GO:0000282] [evidence TAS] [pmid 9891811] --- --- --- --- --- S0001402 // span:504-526 // numtm:1 S0001402 // AXL2 SGDID:S0001402, Chr IX from 85366-87837, Verified ORF // sgd // 11 // --- /// GENSCAN00000016369 // cdna:Genscan chromosome:SGD1:IX:85366:87837:1 // ensembl // 11 // --- /// GENEFINDER00000019017 // cdna:GeneFinder chromosome:SGD1:IX:85366:87837:1 // ensembl // 11 // --- /// YIL140W // cdna:known chromosome:SGD1:IX:85366:87837:1 gene:YIL140W // ensembl // 11 // --- --- No cerevisiae_gene -1.57011057439482 -5.38488234473759 -1.57880704857934 -7.55463839798198 1.16048196014814 Max fold change at or above threshold 4 7.55463839798198 Max fold change at or above threshold 0.709205770146903 -0.809095725068771 -0.90854401092616 1.00843396584803 105.91743516922 91.6753146373185 0.865535636232624 PPAPMP Called_P_>2EXP 2 0 PAMP 1 2 1 Yes No 1 < x = 2
1778476_at SPBC13G1.12.S1 --- 7.55078357140716 --- --- --- --- 6.96736669540405 0.922734260559082 1.3023087978363 8.00784397125244 0.466064006090164 0.753906011581421 0.334473013877869 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13G1.12 /DEF=SNF7 family --- --- --- --- --- --- SPBC13G1.12 // |did2||SNF7 family class E vps |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.10509409043942 -7.55078357140716 -6.89450052581817 -5.35001123157569 1.14933579949721 Max fold change at or above threshold 2 7.55078357140716 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769612_at SPBC19C7.01.S1 --- 7.54925245967841 --- --- --- --- 2.49383544921875 18.8265933990479 3.30084538459778 6.81589555740356 0.567627012729645 0.334473013877869 0.633789002895355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C7.01 /DEF=sequence orphan --- --- --- --- --- --- SPBC19C7.01 // ||SPBC32F12.13c|sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.29025630414708 7.54925245967841 2.4829145659463 1.32360191833501 2.73309755041729 Max fold change at or above threshold 3 7.54925245967841 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773116_at SPBC713.03.S1 --- 7.54720324264628 --- --- --- --- 0.570796489715576 4.30791711807251 0.945883333683014 2.94533038139343 0.932372987270355 0.533936023712158 0.805419981479645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC713.03 /DEF=D-lactate dehydrogenase (cytochrome) (predicted) --- --- --- --- --- --- SPBC713.03 // |||D-lactate dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.53396295216479 7.54720324264628 5.53551155468415 1.65712885542506 5.16003590502294 Max fold change at or above threshold 2 7.54720324264628 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780238_at SPBC28F2.11.S1 --- 7.54624563957136 --- --- --- --- 8.02942943572998 13.4753437042236 13.5996370315552 5.3446946144104 0.0461426004767418 0.111571997404099 0.018554700538516 0.0375977009534836 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC28F2.11 /DEF=transcription factor (predicted) --- --- --- --- --- --- SPBC28F2.11 // |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.92761176448771 1.67824424040144 -7.54624563957136 1.69372396138615 -1.50231772159273 Max fold change at or above threshold 4 7.54624563957136 Max fold change at or above threshold PAAAPP No 4 0 PAPP 1 3 0 No No 2 < x = 3
1779614_at SPBC17D11.06.S1 --- 7.54611660306348 --- --- --- --- 1.29043221473694 9.73775196075439 6.35751295089722 2.48933339118958 0.850341975688934 0.366210997104645 0.398925989866257 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17D11.06 /GEN=spp2 /DEF=DNA primase (large subunit) (PMID 11027257) --- --- --- --- --- --- SPBC17D11.06 // |spp2|pri2|DNA primase large subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 6.84438975586909 7.54611660306348 1.47555513061054 4.9266539367922 1.92906947204278 Max fold change at or above threshold 2 7.54611660306348 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771082_at SPAC27F1.07.S1 --- 7.54587881080497 --- --- --- --- 14.564995765686 17.3649883270264 7.23091745376587 10.3384799957275 0.366210997104645 0.219482004642487 0.5 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27F1.07 /DEF=dolichyl-diphospho-oligosaccharide-protein glycosyltransferase activity (predicted) --- --- --- --- --- --- SPAC27F1.07 // |||dolichyl-diphospho-oligosaccharide-protein glycosyltransferase activity |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.54587881080497 1.19224122041538 -1.92485681578058 -2.01426663474088 -1.4088140395595 Max fold change at or above threshold 4 7.54587881080497 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779851_at SPAC11H11.05c.S1 --- 7.54254937171936 --- --- --- --- 0.754254937171936 0.205472931265831 0.245403215289116 0.0717645436525345 0.725830018520355 0.976073980331421 0.601073980331421 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11H11.05c /DEF=sequence orphan --- --- --- --- --- --- SPAC11H11.05c // |fta6|sma6|kinetochore associated protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.46239530632201 -3.67082385268606 -3.99770202309792 -3.07353323094536 -7.54254937171936 Max fold change at or above threshold 0 7.54254937171936 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774400_at SPAC23D3.10c.S1 --- 7.53868528635286 --- --- --- --- 4.53029251098633 0.600939333438873 7.60170698165894 0.757986724376678 0.129638999700546 0.466064006090164 0.0375977009534836 0.398925989866257 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23D3.10c /GEN=eng2 /DEF=glycosyl hydrolase family 81 --- --- --- --- --- --- SPAC23D3.10c // |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.24570307260449 -7.53868528635286 1.03290616534845 1.67797266141738 -5.97674387333335 Max fold change at or above threshold 2 7.53868528635286 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1775171_at SPCC285.08.S1 --- 7.53780313291754 --- --- --- --- 4.22881126403809 0.983586490154266 2.31620240211487 5.08818435668945 0.601073980331421 0.943848013877869 0.696289002895355 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC285.08 /GEN=ret2 /DEF=coatomer (delta subunit) (putative) --- --- --- --- --- --- SPCC285.08 // |ret2||coatomer delta subunit |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -7.53780313291754 -4.29937916631494 -1.51558175804517 -1.82575204143509 1.20321859714088 Max fold change at or above threshold 2 7.53780313291754 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775979_at SPCC126.03.S1 --- 7.53455063036623 --- --- --- --- 2.10009455680847 3.58982849121094 1.61461806297302 1.01237833499908 0.533936023712158 0.466064006090164 0.466064006090164 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC126.03 /GEN=lps1 /DEF=tRNA pseudouridylate synthase --- --- --- --- --- --- AJ251329 // Schizosaccharomyces pombe mRNA for pseudouridine synthase (lps1 gene). // gb // 11 // --- /// SPCC126.03 // |lps1||tRNA pseudouridylate synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -7.53455063036623 1.70936517099803 -4.63906250061718 -1.30067574801036 -2.0744167315773 Max fold change at or above threshold 1 7.53455063036623 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771128_at SPAC26H5.10c.S1 --- 7.53037351159607 --- --- --- --- 3.50627374649048 6.65327024459839 2.30296015739441 0.964031040668488 0.5 0.665526986122131 0.625244140625 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26H5.10c /GEN=tif51 /DEF=translation initiation factor --- --- --- --- --- --- SPAC26H5.10c // |tif51||translation initiation factor eIF5A|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- AB009604 // gb // 2 // Cross Hyb Matching Probes No No -7.53037351159607 1.89753302954677 -3.32692059064557 -1.52250734135909 -3.63709631596419 Max fold change at or above threshold 2 7.53037351159607 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772609_at YKR041W.S1 Hypothetical protein 7.52999350820407 20.2155017852783 7.68006420135498 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 8.1781759262085 18.1699199676514 22.2610836029053 7.18195247650146 0.0676269978284836 0.00122069998178631 0.00585938012227416 0.030273400247097 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR041W /GEN=GAP1 /DB_XREF=GI:6322893 /SEG=NC_001143:+517840,518592 /DEF=Hypothetical ORF /NOTE=Ykr041wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001749 // YKR041W SGDID:S0001749, Chr XI from 517840-518592, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022968 // cdna:GeneFinder chromosome:SGD1:XI:517840:520266:1 // ensembl // 11 // --- /// GENSCAN00000018451 // cdna:Genscan chromosome:SGD1:XI:518056:518592:1 // ensembl // 10 // --- /// YKR041W // cdna:known chromosome:SGD1:XI:517840:518592:1 gene:YKR041W // ensembl // 11 // --- YKR040C // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene 7.52999350820407 2.22175704357526 1.02309887575435 2.72201084982355 -1.13871206374124 Max fold change at or above threshold 4 7.52999350820407 Max fold change at or above threshold -0.77562160072141 0.567591622862444 1.11757619731967 -0.9095462194607 13.9477829933167 7.43868796555152 0.533324039319791 APPPPP Called_P_>2EXP 3 0 APPP 1 3 0 Yes Yes 2 < x = 3
1776995_at SPAC23C4.12.S1 --- 7.52624274963829 --- --- --- --- 2.27550959587097 17.1260375976563 9.83146381378174 1.74442970752716 0.780517995357513 0.665526986122131 0.696289002895355 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C4.12 /GEN=hhp2 /DEF=serinethreonine protein kinase (PMID 8026462) --- --- --- --- --- --- X78872 // S.pombe hhp2+ mRNA. // gb // 11 // --- /// U10864 // Schizosaccharomyces pombe SP66 casein kinase-1 (hhp2) gene, complete cds. // gb // 11 // --- /// SPAC23C4.12 // |hhp2||serine/threonine protein kinase Hhp2 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.40539453419723 7.52624274963829 -2.30935524792287 4.32055475908405 -1.30444327223517 Max fold change at or above threshold 2 7.52624274963829 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771163_at SPBC16H5.06.S1 --- 7.52621919729507 --- --- --- --- 2.24500298500061 0.704044938087463 1.40625214576721 0.298290938138962 0.753906011581421 0.976073980331421 0.870360970497131 0.84521484375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16H5.06 /GEN=rip1 /DEF=ubiquinol-cytochrome-c reductase complex subunit 5 --- --- --- --- --- --- U40480 // Schizosaccharomyces pombe Rieske iron-sulfur protein (Rip1) mRNA, complete cds. // gb // 10 // --- /// SPBC16H5.06 // |rip1||ubiquinol-cytochrome-c reductase complex subunit 5|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -4.29688502673339 -3.18872115052649 -1.91766810125152 -1.59644413113112 -7.52621919729507 Max fold change at or above threshold 0 7.52621919729507 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773400_at SPBC11C11.09c.S1 --- 7.52575867433526 --- --- --- --- 2.03045916557312 1.79840457439423 1.81367874145508 0.269801259040833 0.665526986122131 0.725830018520355 0.850341975688934 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11C11.09c /GEN=rpl502 /DEF=60S ribosomal protein L5 --- --- --- --- --- --- AB016045 // Schizosaccharomyces pombe mRNA for ribosomal protein L5 homolog, partial cds. // gb // 11 // --- /// SPBC11C11.09c // |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.25209542267034 -1.12903358592549 -2.80786326460197 -1.11952526054538 -7.52575867433526 Max fold change at or above threshold 0 7.52575867433526 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773958_at SPAC806.07.S1 --- 7.52432923223278 --- --- --- --- 1.06715035438538 8.02959060668945 6.89827680587769 1.96315276622772 0.567627012729645 0.129638999700546 0.219482004642487 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC806.07 /GEN=ndk1 /DEF=nucleoside diphosphate kinase (PMID 7499258) --- --- --- --- --- --- SPAC806.07 // |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.36190058295965 7.52432923223278 6.34796746078433 6.46420326576262 1.83962152864429 Max fold change at or above threshold 2 7.52432923223278 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772481_at SPBC577.11.S1 --- 7.52366343789456 --- --- --- --- 1.02989721298218 7.74860000610352 5.35201454162598 6.65502309799194 0.398925989866257 0.24609400331974 0.171387001872063 0.0239257998764515 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC577.11 /DEF=sequence orphan --- --- --- --- --- --- SPBC577.11 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.96427415594872 7.52366343789456 1.02452750212862 5.19664921330221 6.46183232084065 Max fold change at or above threshold 3 7.52366343789456 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1774472_at SPCPB16A4.03c.S1 --- 7.51486179822068 --- --- --- --- 6.61977386474609 1.20607280731201 1.23804378509521 1.33046054840088 0.624755859375 0.953857004642487 0.888427972793579 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCPB16A4.03c /GEN=ade10 /DEF=IMP cyclohydrolase --- --- --- --- --- --- D89243 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1552. // gb // 11 // --- /// SPCPB16A4.03c // |ade10||IMP cyclohydrolase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.10043102653437 -5.48870169745362 -7.51486179822068 -5.34696263931973 -4.97555066379278 Max fold change at or above threshold 1 7.51486179822068 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772542_at SPAC23A1.18c.S1 --- 7.51208342085204 --- --- --- --- 1.30648159980774 9.81439876556396 6.35494375228882 2.30336284637451 0.953857004642487 0.533936023712158 0.432372987270355 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23A1.18c /GEN=mrp51 /DEF=mitochondrial ribosomal protein small subunit mrp51 --- --- --- --- --- --- SPAC23A1.18c // |mrp51||mitochondrial ribosomal protein small subunit Mrp51 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.7954429200729 7.51208342085204 5.84768369392864 4.86416628693738 1.76302739105815 Max fold change at or above threshold 2 7.51208342085204 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770094_at SPBC691.02c.S1 --- 7.50223412498371 --- --- --- --- 0.944016456604004 1.57181560993195 7.08223247528076 1.20468294620514 0.932372987270355 0.805419981479645 0.5 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC691.02c /DEF=Rad50p interacting protein (predicted) --- --- --- --- --- --- SPBC691.02c // |||RINT1 family protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.69180162505695 1.66502988262131 1.17466748259625 7.50223412498371 1.27612494229058 Max fold change at or above threshold 1 7.50223412498371 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770470_s_at SPAC977.09c.S1 --- 7.49632626170337 --- --- --- --- 3.5408787727356 6.23172092437744 7.0273904800415 0.741561651229858 0.0805663987994194 0.2119140625 0.0805663987994194 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC977.09c /DEF=lysophospholipase (putative) --- --- --- --- --- --- D89183 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1018. // gb // 11 // --- /// SPAC977.09c // |||phospholipase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPBC1348.10c // ||SPAC1348.10c|phospholipase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.05878394147078 1.75993625434484 -7.49632626170337 1.98464588343201 -4.77489466568714 Max fold change at or above threshold 3 7.49632626170337 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772679_at SPAC1F5.03c.S1 --- 7.48617831906893 --- --- --- --- 2.94011807441711 14.7867078781128 22.0102481842041 13.6040163040161 0.533936023712158 0.366210997104645 0.171387001872063 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F5.03c /DEF=oxidoreductase (predicted) --- --- --- --- --- --- SPAC1F5.03c // |||oxidoreductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.42821865738591 5.02929049237055 1.56027454013214 7.48617831906893 4.62703060206626 Max fold change at or above threshold 4 7.48617831906893 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777676_at SPAC3G9.12.S1 --- 7.48540281520275 --- --- --- --- 3.75562858581543 4.37443590164185 1.39646852016449 0.501726984977722 0.55908203125 0.533936023712158 0.633789002895355 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G9.12 /DEF=localization spindle pole body (predicted) --- --- --- --- --- --- SPAC3G9.12 // |||mitotic spindle component |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.36215006710766 1.16476797470431 -1.02530628525248 -2.68937575862652 -7.48540281520275 Max fold change at or above threshold 2 7.48540281520275 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779603_at SPBP16F5.07.S1 --- 7.48322212906298 --- --- --- --- 0.62467235326767 0.617336213588715 4.67456197738647 1.99754047393799 0.69677734375 0.904784977436066 0.466064006090164 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP16F5.07 /GEN=apm1 /DEF=AP adaptor complex (predicted) --- --- --- --- --- --- SPBP16F5.07 // |apm1||AP-1 adaptor complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.99411863928032 -1.01188354014793 -1.66310047945444 7.48322212906298 3.1977411253897 Max fold change at or above threshold 1 7.48322212906298 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777179_at SPCC757.07c.S1 --- 7.47838146543222 --- --- --- --- 3.81897664070129 6.06782054901123 1.54300594329834 2.68012690544128 0.780517995357513 0.432372987270355 0.969726979732513 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC757.07c /GEN=ctt1 /DEF=catalase --- --- --- --- --- --- D89126 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0474. // gb // 11 // --- /// SPCC757.07c // |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -7.47838146543222 1.58886034660243 -7.12819035150216 -2.47502393447547 -1.42492380974493 Max fold change at or above threshold 3 7.47838146543222 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770999_at SPAC4C5.04.S1 --- 7.47115867440835 --- --- --- --- 0.928840100765228 0.577323615550995 1.83252823352814 3.45440483093262 0.888427972793579 0.780517995357513 0.567627012729645 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4C5.04 /GEN=rad31 /DEF=ubiquitin activating enzyme (PMID 9092625) --- --- --- --- --- --- SPAC4C5.04 // |rad31|uba4|SUMO E1-like activator enzyme Rad31|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.08648494853864 -1.60887252096685 7.47115867440835 1.97292110021779 3.71905221155578 Max fold change at or above threshold 1 7.47115867440835 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771161_at SPAC328.01c.S1 --- 7.46880495214503 --- --- --- --- 3.83285570144653 1.74537813663483 0.513181924819946 5.64952230453491 0.398925989866257 0.567627012729645 0.828612983226776 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC328.01c /DEF=importin-beta family --- --- --- --- --- --- SPAC328.01c // ||SPAC3A11.01|importin-beta family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.05377322525297 -2.19600304426665 -1.60552211750214 -7.46880495214503 1.47397208363539 Max fold change at or above threshold 2 7.46880495214503 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777869_at SPAC8E11.05c.S1 --- 7.46648976325512 --- --- --- --- 2.1879997253418 8.92896938323975 16.3366775512695 7.27325201034546 0.601073980331421 0.303710997104645 0.014160200022161 0.129638999700546 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8E11.05c /DEF=hypothetical protein --- --- --- --- --- --- SPAC8E11.05c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.75146472712184 4.08088231448243 3.33600809664366 7.46648976325512 3.32415581506038 Max fold change at or above threshold 3 7.46648976325512 Max fold change at or above threshold APAAPA No 4 0 AAPA 3 1 0 No No x = 1
1779295_at SPBC1198.01.S1 --- 7.46409652199994 --- --- --- --- 0.81676185131073 6.09638929367065 2.0258207321167 0.308233171701431 0.850341975688934 0.5 0.601073980331421 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1198.01 /DEF=glutathione-dependent formaldehyde dehydrogenase (predicted) --- --- --- --- --- --- SPBC1198.01 // |||glutathione-dependent formaldehyde dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 2.46696144418116 7.46409652199994 -1.0307077882994 2.48030772845926 -2.64981814514722 Max fold change at or above threshold 1 7.46409652199994 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770869_at SPBC31F10.11c.S1 --- 7.463961836586 --- --- --- --- 1.21847975254059 1.09416341781616 0.822477757930756 0.163248389959335 0.725830018520355 0.665526986122131 0.665526986122131 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31F10.11c /GEN=cwf4 /DEF=involved in mRNA splicing --- --- --- --- --- --- SPBC31F10.11c // |cwf4|syf3|complexed with Cdc5p |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.00681934020091 -1.11361770344374 -1.45280117323085 -1.48147441166813 -7.463961836586 Max fold change at or above threshold 0 7.463961836586 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775757_at YDL059C.S1 Protein involved in the repair of double-strand breaks in DNA during vegetative growth via recombination and single-strand annealing; anneals complementary single-stranded DNA; homologous to Rad52p 7.46324067166022 94.2772521972656 643.552917480469 RAD59 722 // telomerase-independent telomere maintenance // inferred from mutant phenotype /// 727 // double-strand break repair via break-induced replication // traceable author statement /// 45002 // double-strand break repair via single-strand annealing // inferred from genetic interaction 5634 // nucleus // inferred from genetic interaction 739 // DNA strand annealing activity // inferred from direct assay /// 5515 // protein binding // inferred from physical interaction 634.218872070313 103.575485229492 84.9790191650391 652.886962890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL059C /GEN=RAD59 /DB_XREF=GI:6320144 /SEG=NC_001136:-344237,344953 /DEF=Protein involved in the repair of double-strand breaks in DNA during vegetative growth via recombination and single-strand annealing; anneals complementary single-stranded DNA; homologous to Rad52p /NOTE=Rad59p; go_component: nucleus [goid GO:0005634] [evidence IGI] [pmid 12368472]; go_function: DNA strand annealing activity [goid GO:0000739] [evidence IDA] [pmid 10567339]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 10655498]; go_process: double-strand break repair via break-induced replication [goid GO:0000727] [evidence TAS] [pmid 11459961]; go_process: double-strand break repair via single-strand annealing [goid GO:0045002] [evidence IGI] [pmid 11606529]; go_process: telomerase-independent telomere maintenance [goid GO:0000722] [evidence IMP] [pmid 11238918] --- --- --- --- --- --- S0002217 // RAD59 SGDID:S0002217, Chr IV from 344953-344237, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023745 // cdna:GeneFinder chromosome:SGD1:IV:344156:344953:-1 // ensembl // 11 // --- /// YDL059C // cdna:known chromosome:SGD1:IV:344237:344953:-1 gene:YDL059C // ensembl // 11 // --- --- No cerevisiae_gene -3.76142538296674 -6.1232527239923 -1.3577909819183 -7.46324067166022 1.02943477660854 Max fold change at or above threshold 4 7.46324067166022 Max fold change at or above threshold 0.836111113105281 -0.836223976654973 -0.894831175983832 0.894944039533524 368.915084838867 317.306854403739 0.86010810466677 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769457_at SPBC557.03c.S1 --- 7.46032265102222 --- --- --- --- 4.65319061279297 2.47440195083618 5.74603033065796 0.623725116252899 0.5 0.696289002895355 0.665526986122131 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC557.03c /GEN=pim1 /DEF=GDPGTP exchange factor (RanGEF) (predicted) --- --- --- --- --- --- SPBC557.03c // |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.08731447651704 -1.88053141940844 -5.18286162433268 1.23485814547559 -7.46032265102222 Max fold change at or above threshold 2 7.46032265102222 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772799_at SPBC1711.09c.S1 --- 7.45955851678281 --- --- --- --- 7.08755111694336 6.18528079986572 4.58551549911499 1.68885815143585 0.194580003619194 0.366210997104645 0.24609400331974 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1711.09c /DEF=hypothetical protein --- --- --- --- --- --- SPBC1711.09c // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.45955851678281 -1.14587378427463 -1.18164025685343 -1.54563889671974 -4.19665269751494 Max fold change at or above threshold 3 7.45955851678281 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769317_at YML113W.S1 DNA binding protein that recognizes oligo(dA).oligo(dT) tracts; Arg side chain in its N-terminal pentad Gly-Arg-Lys-Pro-Gly repeat is required for DNA-binding; not essential for viability 7.45872011228369 73.2437629699707 523.804153442383 DAT1 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 3680 // AT DNA binding // inferred from direct assay 479.069122314453 64.2294006347656 82.2581253051758 568.539184570313 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML113W /GEN=DAT1 /DB_XREF=GI:6323523 /SEG=NC_001145:+44045,44791 /DEF=datin, an oligo(dA).oligo(dT)-binding protein /NOTE=Dat1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: AT DNA binding [goid GO:0003680] [evidence IDA] [pmid 2670564]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IMP] [pmid 8248247] --- --- --- --- --- --- S0004581 // DAT1 SGDID:S0004581, Chr XIII from 44045-44791, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021999 // cdna:GeneFinder chromosome:SGD1:XIII:44045:44791:1 // ensembl // 11 // --- /// YML113W // cdna:known chromosome:SGD1:XIII:44045:44791:1 gene:YML113W // ensembl // 11 // --- GENSCAN00000018622 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.41323961152365 -7.45872011228369 -1.30334960748746 -5.82397326145129 1.18675814843507 Max fold change at or above threshold 4 7.45872011228369 Max fold change at or above threshold 0.687042247787857 -0.891578903668596 -0.822972826161704 1.02750948204244 298.523958206177 262.786116413651 0.880284845453365 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769971_at SPCC1919.15.S1 --- 7.45704973102573 --- --- --- --- 0.609521329402924 0.447130113840103 0.607787668704987 0.18606036901474 0.805419981479645 0.870360970497131 0.696289002895355 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1919.15 /DEF=zinc finger protein --- --- --- --- --- --- SPCC1919.15 // ||SPCC790.01|zinc finger protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.78769294678279 -1.36318559304394 7.45704973102573 -1.00285241176681 -3.27593314272443 Max fold change at or above threshold 0 7.45704973102573 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773495_at SPAC23A1.05.S1 --- 7.45386492149413 --- --- --- --- 1.44499707221985 2.92212009429932 10.7708129882813 5.5700888633728 0.432372987270355 0.326416015625 0.0107421996071935 0.0676269978284836 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23A1.05 /DEF=dubious --- --- --- --- --- --- SPAC23A1.05 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.28569871559588 2.02223253629868 2.79960506583584 7.45386492149413 3.85474058768566 Max fold change at or above threshold 3 7.45386492149413 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1771496_at SPAC26F1.06.S1 --- 7.45383409330454 --- --- --- --- 0.762759208679199 2.92770481109619 5.68548059463501 2.48782849311829 0.995850026607513 0.665526986122131 0.366210997104645 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26F1.06 /GEN=gpm1 /DEF=phosphoglycerate mutase (PMID 8110200) --- --- --- --- --- --- X75385 // S.pombe mRNA for phosphoglycerate mutase. // gb // 11 // --- /// SPAC26F1.06 // |gpm1||monomeric 2,3-bisphosphoglycerate |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- AB084892 // gb // 5 // Negative Strand Matching Probes No No -1.72138792525555 3.83830805027688 -1.00563619398088 7.45383409330454 3.26161711954449 Max fold change at or above threshold 2 7.45383409330454 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774731_at SPBC29B5.02c.S1 --- 7.45122344378504 --- --- --- --- 8.34279346466064 3.3096444606781 1.11965417861938 4.01211023330688 0.018554700538516 0.194580003619194 0.5 0.0561522990465164 P A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29B5.02c /GEN=isp4 /DEF=involved in sexual differentiation (PMID 7954893) --- --- --- --- --- --- D14061 // Schizosaccharomyces pombe mRNA for ORF. // gb // 9 // --- /// SPBC29B5.02c // |isp4||OPT oligopeptide transporter family |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.72246169479063 -2.52075217256156 -1.46534029717518 -7.45122344378504 -2.07940285274373 Max fold change at or above threshold 3 7.45122344378504 Max fold change at or above threshold PAAPAM No 4 0 PAAM 2 1 1 No No x = 1
1773945_at SPAPYUK71.03c.S1 --- 7.45060085096869 --- --- --- --- 3.2734477519989 8.17377471923828 1.42407429218292 0.43935352563858 0.601073980331421 0.665526986122131 0.665526986122131 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPYUK71.03c /DEF=C2 domain --- --- --- --- --- --- SPAPYUK71.03c // |||C2 domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.26480756906668 2.49699257128727 -5.64703547639466 -2.2986495648209 -7.45060085096869 Max fold change at or above threshold 2 7.45060085096869 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776759_at YKL107W.S1 Hypothetical protein 7.44944131642859 237.258285522461 1398.43005371094 --- --- --- --- 1340.26879882813 179.915344238281 294.601226806641 1456.59130859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL107W /GEN=SLD2 /DB_XREF=GI:6322742 /SEG=NC_001143:+235787,236716 /DEF=Hypothetical ORF /NOTE=Ykl107wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001590 // YKL107W SGDID:S0001590, Chr XI from 235787-236716, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018336 // cdna:Genscan chromosome:SGD1:XI:235787:236716:1 // ensembl // 11 // --- /// GENEFINDER00000022986 // cdna:GeneFinder chromosome:SGD1:XI:235787:236716:1 // ensembl // 11 // --- /// YKL107W // cdna:known chromosome:SGD1:XI:235787:236716:1 gene:YKL107W // ensembl // 11 // --- --- No cerevisiae_gene -4.51314170279046 -7.44944131642859 1.11873702238412 -4.54943386813457 1.08679043328274 Max fold change at or above threshold 4 7.44944131642859 Max fold change at or above threshold 0.775442588128781 -0.946887171341988 -0.776657223081545 0.948101806294751 817.844169616699 673.711551582545 0.823765182428696 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777220_at SPBC646.13.S1 --- 7.44671731966545 --- --- --- --- 7.70782089233398 8.14517307281494 7.16217279434204 9.12062549591064 0.303710997104645 0.171387001872063 0.129638999700546 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC646.13 /GEN=sds23 /DEF=CBS domain protein --- --- --- --- --- --- D87870 // Schizosaccharomyces pombe mRNA for MOC1, complete cds. // gb // 11 // --- /// SPBC646.13 // |sds23|psp1, moc1|CBS domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.44671731966545 1.05674135226935 -3.77701848100716 -1.07618471568055 1.18329494461681 Max fold change at or above threshold 4 7.44671731966545 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779881_at YLR318W.S1 Reverse transcriptase subunit of the telomerase holoenzyme, essential for telomerase core catalytic activity, involved in other aspects of telomerase assembly and function; mutations in human homolog are associated with aplastic anemia 7.44481640222219 24.1708545684814 177.816513061523 EST2 7004 // telomerase-dependent telomere maintenance // traceable author statement /// 7004 // telomerase-dependent telomere maintenance // inferred from direct assay /// 7004 // telomerase-dependent telomere maintenance // inferred from mutant phenotype 333 // telomerase catalytic core complex // traceable author statement /// 333 // telomerase catalytic core complex // inferred from direct assay /// 333 // telomerase catalytic core complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay /// 5697 // telomerase holoenzyme complex // inferred from direct assay /// 5697 // telomerase holoenzyme complex // inferred from physical interaction /// 5730 // nucleolus // inferred from direct assay 3720 // telomerase activity // inferred from direct assay /// 3721 // telomeric template RNA reverse transcriptase activity // traceable author statement 155.257553100586 20.8544502258301 27.4872589111328 200.375473022461 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR318W /GEN=EST2 /DB_XREF=GI:6323350 /SEG=NC_001144:+766542,769196 /DEF=Reverse transcriptase subunit of the telomerase holoenzyme, essential for telomerase core catalytic activity, involved in other aspects of telomerase assembly and function /NOTE=Est2p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 12101098]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12101098]; go_component: telomerase catalytic core complex [goid GO:0000333] [evidence TAS] [pmid 11884619]; go_component: telomerase holoenzyme complex [goid GO:0005697] [evidence IDA,IPI] [pmid 10898986]; go_function: telomeric template RNA reverse transcriptase activity [goid GO:0003721] [evidence TAS] [pmid 11884619]; go_process: telomerase-dependent telomere maintenance [goid GO:0007004] [evidence TAS] [pmid 11884619] --- --- --- --- --- --- S0004310 // EST2 SGDID:S0004310, Chr XII from 766542-769196, Verified ORF // sgd // 11 // --- /// YLR318W // cdna:known chromosome:SGD1:XII:766542:769196:1 gene:YLR318W // ensembl // 11 // --- --- No cerevisiae_gene -1.5134970266915 -7.44481640222219 -1.22249035685508 -5.64834615203133 1.29060048300932 Max fold change at or above threshold 4 7.44481640222219 Max fold change at or above threshold 0.598675003445657 -0.884149187604585 -0.810971642125296 1.09644582628422 100.993683815002 90.6399448336232 0.897481321699831 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770811_at SPAC56F8.10.S1 --- 7.44331754022897 --- --- --- --- 5.57537412643433 3.9321916103363 4.90510129928589 2.50687837600708 0.149657994508743 0.274170011281967 0.366210997104645 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC56F8.10 /GEN=met9 /DEF=methylenetetrahydrofolate reductase (NADPH) activity (PMID 1212238) --- --- --- --- --- --- SPAC56F8.10 // |met9|met5|methylenetetrahydrofolate reductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.44331754022897 -1.41787956410331 1.26162294897877 -1.13664811106878 -2.22403056318779 Max fold change at or above threshold 4 7.44331754022897 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1775064_at SPBC31F10.08.S1 --- 7.44121081207045 --- --- --- --- 2.45143890380859 6.21791124343872 0.329440861940384 0.529947102069855 0.366210997104645 0.303710997104645 0.904784977436066 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31F10.08 /GEN=mde2 /DEF=involved in meiosis (implicated) --- --- --- --- --- --- SPBC31F10.08 // |mde2||Mde2 protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.14582593973808 2.53643328976238 -1.78397655551716 -7.44121081207045 -4.62581811323021 Max fold change at or above threshold 1 7.44121081207045 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779915_at SPBC83.08.S1 --- 7.44056616864795 --- --- --- --- 3.02017593383789 1.10478925704956 4.08809328079224 0.405906736850739 0.601073980331421 0.567627012729645 0.35791015625 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC83.08 /DEF=AAA family ATPase --- --- --- --- --- --- SPBC83.08 // |||AAA family ATPase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.63027742727552 -2.73371225739789 1.19899402693626 1.35359441646742 -7.44056616864795 Max fold change at or above threshold 2 7.44056616864795 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773864_at SPBC146.12.S1 --- 7.42997711014565 --- --- --- --- 8.65219593048096 1.53789138793945 1.65936517715454 2.85120320320129 0.194580003619194 0.633789002895355 0.601073980331421 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC146.12 /GEN=coq6 /DEF=monooxygenase (predicted) --- --- --- --- --- --- SPBC146.12 // |coq6||monooxygenase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.42997711014565 -5.62601234283106 -1.42365824989939 -5.21416024007304 -3.0345770938972 Max fold change at or above threshold 2 7.42997711014565 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769884_at SPBC3E7.04c.S1 --- 7.42876624764893 --- --- --- --- 0.330512017011642 0.315320730209351 2.45529651641846 0.461044490337372 0.998778998851776 0.995850026607513 0.805419981479645 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3E7.04c /DEF=pseudo --- --- --- --- --- --- SPBC3E7.04c // |||pseudo|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 1.87233618177872 -1.048177253656 4.00454962573521 7.42876624764893 1.39494017344952 Max fold change at or above threshold 0 7.42876624764893 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777197_at SPAC23H3.04.S1 --- 7.42654654801195 --- --- --- --- 0.889223396778107 6.60385894775391 0.776196360588074 3.18374943733215 0.633789002895355 0.466064006090164 0.850341975688934 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H3.04 /DEF=hypothetical protein --- --- --- --- --- --- SPAC23H3.04 // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.02514281914642 7.42654654801195 -2.19630229243677 -1.14561655004978 3.58037074695484 Max fold change at or above threshold 2 7.42654654801195 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770853_at SPBC646.02.S1 --- 7.42602301817616 --- --- --- --- 1.0595862865448 1.41126763820648 7.86851215362549 3.81269955635071 0.60107421875 0.665526986122131 0.219482004642487 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC646.02 /GEN=cwf11 /DEF=complexed with Cdc5p (PMID 11884590) --- --- --- --- --- --- SPBC646.02 // |cwf11||complexed with Cdc5p |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 2.17281790511601 1.33190440092282 -1.53679469666929 7.42602301817616 3.59829077137599 Max fold change at or above threshold 2 7.42602301817616 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770304_at SPAC2F3.07c.S1 --- 7.42150048546485 --- --- --- --- 1.09457981586456 1.23001182079315 0.147487670183182 1.4872350692749 0.753906011581421 0.533936023712158 0.725830018520355 0.26708984375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F3.07c /DEF=dubious --- --- --- --- --- --- SPAC2F3.07c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.02851768069094 1.12372967504578 1.51045964817473 -7.42150048546485 1.35872692673416 Max fold change at or above threshold 0 7.42150048546485 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772417_at SPBC342.04.S1 --- 7.41700362415995 --- --- --- --- 1.04162085056305 2.72963738441467 1.5470724105835 0.798098862171173 0.919434010982513 0.753906011581421 0.888427972793579 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC342.04 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC342.04 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 7.41700362415995 2.62056715064715 1.71797679242102 1.48525484080625 -1.30512759751266 Max fold change at or above threshold 1 7.41700362415995 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777751_at SPCC645.13.S1 --- 7.4155871923353 --- --- --- --- 13.5530471801758 14.0671348571777 10.7413663864136 12.9279317855835 0.274170011281967 0.274170011281967 0.149657994508743 0.107177734375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC645.13 /DEF=zinc finger protein --- --- --- --- --- --- SPCC645.13 // |||zinc finger protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.15701838785981 1.03793151976582 -7.4155871923353 -1.26176192977819 -1.0483538592994 Max fold change at or above threshold 4 7.4155871923353 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777516_at SPBC405.05.S1 --- 7.41443780070562 --- --- --- --- 0.679286003112793 5.03652381896973 1.14834344387054 0.583563983440399 0.753906011581421 0.274170011281967 0.805419981479645 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC405.05 /DEF=hypothetical protein --- --- --- --- --- --- SPBC405.05 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- D89255 // gb // 4 // Cross Hyb Matching Probes No No 1.44454310997174 7.41443780070562 -4.04272798066207 1.69051539205625 -1.16403003336166 Max fold change at or above threshold 1 7.41443780070562 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778298_at SPBC1773.05c.S1 --- 7.41360398696872 --- --- --- --- 5.58151865005493 1.312495470047 4.97942352294922 3.79830360412598 0.5 0.828612983226776 0.5 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1773.05c /GEN=tms1 /DEF=dehydrogenase (PMID 8223615) --- --- --- --- --- --- SPBC1773.05c // |tms1||hexitol dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.41360398696872 -4.25260031553105 -3.81399446780998 -1.12091663308629 -1.46947670112308 Max fold change at or above threshold 3 7.41360398696872 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777684_at SPBC3H7.02.S1 --- 7.40658656279053 --- --- --- --- 0.506478548049927 1.40378975868225 2.28380751609802 0.667396068572998 0.974609375 0.884033203125 0.633789002895355 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3H7.02 /DEF=sulfate transporter activity (predicted) --- --- --- --- --- --- SPBC3H7.02 // |||sulfate transporter |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 7.40658656279053 2.77166676473703 -1.14509693259752 4.50918903651748 1.31771833405905 Max fold change at or above threshold 0 7.40658656279053 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770694_at SPAC25B8.04c.S1 --- 7.3993751703346 11.3519473075867 3.30264115333557 --- --- --- --- 2.16779661178589 16.040340423584 6.66355419158936 4.43748569488525 0.805419981479645 0.366210997104645 0.665526986122131 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25B8.04c /DEF=similar to S. cerevisiae YLR203C --- --- --- --- --- --- SPAC25B8.04c // |||mitochondrial splicing suppressor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No cerevisiae_gene 1.51737594416786 7.3993751703346 -1.01007576458622 3.07388347936375 2.04700278188438 Max fold change at or above threshold 3 7.3993751703346 Max fold change at or above threshold -0.846961420742634 1.43029700333854 -0.108956772126768 -0.474378810469142 7.32729423046112 6.09177406705405 0.831381117702255 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779709_at SPCC757.08.S1 --- 7.39888871891713 --- --- --- --- 3.51856112480164 13.9521923065186 2.076327085495 4.37026405334473 0.466064006090164 0.398925989866257 0.601073980331421 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC757.08 /DEF=exosome (RNase complex) (predicted) --- --- --- --- --- --- SPCC757.08 // |||exosome |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.03580715839602 3.96531190212167 -7.39888871891713 -1.69460830587914 1.242060006444 Max fold change at or above threshold 3 7.39888871891713 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775836_at SPBC18E5.02c.S1 --- 7.3930021128241 --- --- --- --- 4.63448190689087 1.42666447162628 1.20184946060181 0.626874148845673 0.274170011281967 0.633789002895355 0.533936023712158 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18E5.02c /DEF=serine palmitoyltransferase (subunit) (predicted) --- --- --- --- --- --- SPBC18E5.02c // ||SPBC29A3.20c|serine palmitoyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.6635069115164 -3.24847362436098 -1.20556086407757 -3.8561251294902 -7.3930021128241 Max fold change at or above threshold 1 7.3930021128241 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775773_at SPBC1348.14c.S1 --- 7.38802635963019 --- --- --- --- 3.35567569732666 1.80549263954163 1.49825441837311 3.2549843788147 0.398925989866257 0.432372987270355 0.725830018520355 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1348.14c /DEF=hexose transporter (predicted) --- --- --- --- --- --- SPBC1348.14c // ||SPAPB8B6.01c, SPAC1348.14c, SPBPB8B6.01c|hexose transporter |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.38802635963019 -1.8585928426596 -6.4014863564936 -2.23972354506416 -1.03093450130431 Max fold change at or above threshold 2 7.38802635963019 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771500_at YMR078C.S1 Subunit of a complex with Ctf8p that shares some subunits with Replication Factor C and is required for sister chromatid cohesion; may have overlapping functions with Rad24p in the DNA damage replication checkpoint 7.38712881322423 38.917896270752 276.831741333008 CTF18 7064 // mitotic sister chromatid cohesion // inferred from mutant phenotype 5663 // DNA replication factor C complex // inferred from physical interaction /// 5739 // mitochondrion // inferred from direct assay --- 269.962524414063 36.5449867248535 41.2908058166504 283.700958251953 0.000732421991415322 0.000732421875 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR078C /GEN=CTF18 /DB_XREF=GI:6323724 /SEG=NC_001145:-422502,424727 /DEF=Subunit of a complex with Ctf8p that shares some subunits with Replication Factor C and is required for sister chromatid cohesion; may have overlapping functions with Rad24p in the DNA damage replication checkpoint /NOTE=Ctf18p; go_component: DNA replication factor C complex [goid GO:0005663] [evidence IPI] [pmid 11389843]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitotic sister chromatid cohesion [goid GO:0007064] [evidence IMP] [pmid 11389843] --- --- --- --- --- --- S0004683 // CTF18 SGDID:S0004683, Chr XIII from 424727-422502, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018776 // cdna:Genscan chromosome:SGD1:XIII:422502:424727:-1 // ensembl // 10 // --- /// YMR078C // cdna:known chromosome:SGD1:XIII:422502:424727:-1 gene:YMR078C // ensembl // 10 // --- --- No cerevisiae_gene -1.24263846727622 -7.38712881322423 -2.26612915001444 -6.53807837058973 1.05089015176351 Max fold change at or above threshold 4 7.38712881322423 Max fold change at or above threshold 0.815256037777067 -0.88247749941027 -0.847959372309231 0.915180833942434 157.87481880188 137.487734427345 0.870865508956692 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779178_at SPCC4G3.09c.S1 --- 7.3773540505742 --- --- --- --- 10.4157285690308 2.14383554458618 2.0149827003479 4.78168630599976 0.601073980331421 0.932372987270355 0.932372987270355 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4G3.09c /GEN=gyp3 /DEF=TBC domain protein --- --- --- --- --- --- SPCC4G3.09c // |gyp3||GTPase activating protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -7.3773540505742 -4.85845502251026 -3.78877503790143 -5.16914044335587 -2.17825426062805 Max fold change at or above threshold 2 7.3773540505742 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779136_at YCR072C.S1 Protein required for cell viability 7.36889323303627 61.8940238952637 329.106994628906 --- --- --- --- 324.057525634766 79.8116302490234 43.9764175415039 334.156463623047 0.000244141003349796 0.00122069998178631 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR072C /GEN=IMG2 /DB_XREF=GI:10383804 /SEG=NC_001135:-240800,242347 /DEF=Protein required for cell viability /NOTE=Ycr072cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000668 // YCR072C SGDID:S0000668, Chr III from 242347-240800, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022508 // cdna:Genscan chromosome:SGD1:III:240800:242347:-1 // ensembl // 11 // --- /// YCR072C // cdna:known chromosome:SGD1:III:240800:242347:-1 gene:YCR072C // ensembl // 11 // --- GENEFINDER00000023396 // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene 1.30203997337908 -4.0602794933979 -1.35683189262202 -7.36889323303627 1.03116402857332 Max fold change at or above threshold 4 7.36889323303627 Max fold change at or above threshold 0.829280182280077 -0.746271945185849 -0.977433437297549 0.894425200203321 195.500509262085 155.02241476363 0.792951462626674 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776818_at SPBP8B7.08c.S1 --- 7.3637638675028 --- --- --- --- 0.687865614891052 4.28907918930054 5.06527996063232 0.527882516384125 0.665526986122131 0.274170011281967 0.24609400331974 0.71875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.08c /DEF=leucine carboxyl methyltransferase (predicted) --- --- --- --- --- --- SPBP8B7.08c // |||leucine carboxyl methyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.79820541470704 6.23534466100601 1.9727650606951 7.3637638675028 -1.30306572682644 Max fold change at or above threshold 2 7.3637638675028 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778438_at SPBC3F6.05.S1 --- 7.36018074579041 --- --- --- --- 0.640546381473541 1.68275988101959 1.92374169826508 4.71453714370728 0.780517995357513 0.805419981479645 0.601073980331421 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3F6.05 /GEN=rga1 /DEF=GTPase activating protein --- --- --- --- --- --- SPBC3F6.05 // |rga1||GTPase activating protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.74889420522773 2.62706952952961 2.1345709357903 3.00328243809545 7.36018074579041 Max fold change at or above threshold 1 7.36018074579041 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774385_at SPCC320.05.S1 --- 7.34778855727177 --- --- --- --- 4.95355844497681 1.70113110542297 10.0688438415527 4.38901376724243 0.334473013877869 0.850341975688934 0.219482004642487 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC320.05 /DEF=sulfate transporter (predicted) --- --- --- --- --- --- SPCC320.05 // |||sulfate transporter |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -7.34778855727177 -2.91192044468856 1.81646909788018 2.03264864105179 -1.12862677304589 Max fold change at or above threshold 3 7.34778855727177 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779606_at SPAC23A1.16c.S1 --- 7.3471263788665 --- --- --- --- 3.61559534072876 4.47158050537109 8.44331073760986 6.73520612716675 0.5 0.5 0.219482004642487 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23A1.16c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC23A1.16c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.01870120395075 1.23674805501597 -7.3471263788665 2.33524770941541 1.86282077844729 Max fold change at or above threshold 4 7.3471263788665 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778217_at SPAC22E12.02.S1 --- 7.34693882160088 --- --- --- --- 1.26681208610535 9.30719089508057 3.2539587020874 0.38908264040947 0.888427972793579 0.303710997104645 0.725830018520355 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22E12.02 /DEF=RNA-binding protein --- --- --- --- --- --- SPAC22E12.02 // |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.3452858294932 7.34693882160088 1.44425899072062 2.56861987486343 -3.2558946468857 Max fold change at or above threshold 2 7.34693882160088 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771623_at SPAC1D4.09c.S1 --- 7.34644515488646 --- --- --- --- 6.4006085395813 15.7068367004395 9.72098255157471 4.52948188781738 0.0805663987994194 0.398925989866257 0.111571997404099 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1D4.09c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC1D4.09c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.34644515488646 2.45395990136071 1.41852599956984 1.51875911352182 -1.41309948866261 Max fold change at or above threshold 4 7.34644515488646 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770373_at SPBC651.02.S1 --- 7.33342970739901 --- --- --- --- 1.52317869663239 3.08979487419128 5.23363399505615 3.73302316665649 0.5 0.533936023712158 0.14453125 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC651.02 /DEF=carbon-nitrogen hydroalse family --- --- --- --- --- --- SPBC651.02 // |||carbon-nitrogen hydrolase family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.84416172713135 2.0285176526054 -7.33342970739901 3.43599474351057 2.45081104069397 Max fold change at or above threshold 3 7.33342970739901 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772902_at YLL006W-A.S1 Identified by fungal homology and RT-PCR 7.33331404673519 3.09442609548569 1.52151393890381 --- --- --- --- 1.35156536102295 4.76655626296997 1.4222959280014 1.69146251678467 0.601073980331421 0.5 0.828612983226776 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL006W-A /GEN=DRS1 /DB_XREF=GI:33438828 /SEG=NC_001144:+136344,136520 /DEF=Identified by fungal homology and RT-PCR /NOTE=Yll006w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028560 // span:12-34 // numtm:1 S0028560 // YLL006W-A SGDID:S0028560, Chr XII from 136344-136520, Uncharacterized ORF // sgd // 11 // --- /// YLL006W-A // cdna:known chromosome:SGD1:XII:136344:136520:1 gene:YLL006W-A // ensembl // 11 // --- --- No cerevisiae_gene 7.33331404673519 3.52669312223446 -1.28717432942688 1.05233233184144 1.25148406844673 Max fold change at or above threshold 1 7.33331404673519 Max fold change at or above threshold -0.581194095025622 1.49404940569329 -0.538212091957762 -0.374643218709907 2.30797001719475 1.64558563887273 0.713001307041623 APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769867_at SPAC607.09c.S1 --- 7.33254597877295 --- --- --- --- 4.10397624969482 11.8435840606689 7.0781044960022 0.559693217277527 0.274170011281967 0.00805663969367743 0.111571997404099 0.5 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC607.09c /GEN=btn1 /DEF=battenin family protein --- --- --- --- --- --- SPAC607.09c // |btn1||battenin family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.85884736730686 2.88588026345173 -5.78121811193699 1.72469431238266 -7.33254597877295 Max fold change at or above threshold 3 7.33254597877295 Max fold change at or above threshold APPAAA No 4 0 APAA 3 1 0 No No x = 1
1774702_at SPAP27G11.10c.S1 --- 7.33196280752072 --- --- --- --- 4.8789176940918 8.22871875762939 1.31930565834045 0.665431320667267 0.466064006090164 0.274170011281967 0.567627012729645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP27G11.10c /GEN=nup184 /DEF=nucleoporin --- --- --- --- --- --- SPAP27G11.10c // |nup184||nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.06502012542817 1.68658691815894 -1.03291553677056 -3.69809502691662 -7.33196280752072 Max fold change at or above threshold 2 7.33196280752072 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778376_at SPCC613.11c.S1 --- 7.32932990758214 --- --- --- --- 12.1422309875488 10.0403327941895 4.0321364402771 1.65666317939758 0.0805663987994194 0.0561522990465164 0.24609400331974 0.5 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC613.11c /GEN=meu23 /DEF=B13958 domain --- --- --- --- --- --- AB054307 // Schizosaccharomyces pombe mRNA for Meu23, complete cds. // gb // 10 // --- /// SPCC613.11c // |meu23|B13958-2|B13958 domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -2.08141806570973 -1.20934547055809 -1.46528788381507 -3.01136411611964 -7.32932990758214 Max fold change at or above threshold 3 7.32932990758214 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1776349_s_at YLL066W-B.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /// Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 7.32666190325556 15.6048517227173 13.1004409790039 --- --- --- --- 19.7414684295654 16.4587364196777 14.7509670257568 6.45941352844238 0.0461426004767418 0.171387001872063 0.0805663987994194 0.149657994508743 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL066W-B /DB_XREF=GI:33438827 /SEG=NC_001144:+5605,5775 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Yll066w-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028672 // YLL066W-B SGDID:S0028672, Chr XII from 5605-5775, Uncharacterized ORF // sgd // 11 // --- /// S0028686 // YLR466C-B SGDID:S0028686, Chr XII from 1071707-1071591, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YBL109W // cdna:known chromosome:SGD1:II:5790:6125:1 gene:YBL109W // ensembl // 10 // --- /// YDR544C // cdna:known chromosome:SGD1:IV:1525078:1525506:-1 gene:YDR544C // ensembl // 11 // --- /// YHR217C // cdna:known chromosome:SGD1:VIII:556580:557041:-1 gene:YHR217C // ensembl // 11 // --- /// YLL066W-B // cdna:known chromosome:SGD1:XII:5605:5775:1 gene:YLL066W-B // ensembl // 11 // --- /// YLR466C-B // cdna:known chromosome:SGD1:XII:1071591:1071707:-1 gene:YLR466C-B // ensembl // 11 // --- /// YNL338W // cdna:known chromosome:SGD1:XIV:6561:6719:1 gene:YNL338W // ensembl // 11 // --- --- No cerevisiae_gene -7.32666190325556 -1.19945224992867 -1.21698339716386 -1.33831689780708 -3.05623232552598 Max fold change at or above threshold 4 7.32666190325556 Max fold change at or above threshold 0.952931871139459 0.372430249274162 0.0704370009806733 -1.39579912139429 14.3526463508606 5.65499196942716 0.394003435407442 PMAAAA No 4 0 PAAA 3 1 0 No No x = 1
1773546_at YOR381W.S1 Ferric reductase, reduces siderophore-bound iron prior to uptake by transporters; expression induced by low iron levels 7.32281854102169 8.70077705383301 5.83443808555603 FRE3 6879 // iron ion homeostasis // inferred from mutant phenotype /// 6879 // iron ion homeostasis // inferred from expression pattern /// 15892 // iron-siderophore transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity 293 // ferric-chelate reductase activity // inferred from sequence similarity 10.1239061355591 8.34795093536377 9.05360317230225 1.54497003555298 0.1884765625 0.533936023712158 0.274170011281967 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR381W /GEN=FRE3 /DB_XREF=GI:6324957 /SEG=NC_001147:+1055541,1057676 /DEF=Ferric reductase, reduces siderophore-bound iron prior to uptake by transporters; expression induced by low iron levels /NOTE=Fre3p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 9726978]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 11120744]; go_function: ferric-chelate reductase activity [goid GO:0000293] [evidence ISS] [pmid 3139452]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IEP,IMP] [pmid 10341420]; go_process: iron-siderochrome transport [goid GO:0015892] [evidence IMP] [pmid 9726978] --- --- --- --- --- S0005908 // span:2-21,162-184,236-258,282-301,322-341,351-373,380-402 // numtm:7 S0005908 // FRE3 SGDID:S0005908, Chr XV from 1055541-1057676, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022826 // cdna:GeneFinder chromosome:SGD1:XV:1055541:1057676:1 // ensembl // 11 // --- /// GENSCAN00000017827 // cdna:Genscan chromosome:SGD1:XV:1055619:1057676:1 // ensembl // 11 // --- /// YOR381W // cdna:known chromosome:SGD1:XV:1055541:1057676:1 gene:YOR381W // ensembl // 11 // --- --- No cerevisiae_gene -1.21628994664595 -1.21274145163839 -7.32281854102169 -1.11821845323763 -6.55281714375484 Max fold change at or above threshold 3 7.32281854102169 Max fold change at or above threshold 0.735339733112315 0.278128978418062 0.459795605913422 -1.4732643174438 7.26760756969452 3.88432507757376 0.534470943886838 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773121_at SPCC162.12.S1 --- 7.32166710379447 --- --- --- --- 8.87197971343994 3.56030178070068 4.80933809280396 5.07338285446167 0.303710997104645 0.366210997104645 0.466064006090164 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC162.12 /DEF=serine-rich protein --- --- --- --- --- --- SPCC162.12 // ||SPCC1753.06c|serine-rich protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.5909581804516 -2.49191789345843 -7.32166710379447 -1.84474028280831 -1.74873057444062 Max fold change at or above threshold 4 7.32166710379447 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770438_at SPAC23H4.09.S1 --- 7.31912838332108 --- --- --- --- 1.49174523353577 10.9182748794556 2.89635634422302 9.21918964385986 0.398925989866257 0.171387001872063 0.398925989866257 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H4.09 /GEN=cdb4 /DEF=curved DNA-binding protein?? --- --- --- --- --- --- SPAC23H4.09 // |cdb4||curved DNA-binding protein Cdb4|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.64966301641741 7.31912838332108 1.55175741465371 1.94158913942565 6.18013682001741 Max fold change at or above threshold 3 7.31912838332108 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770199_at SPAC2G11.11c.S1 --- 7.3179868016128 --- --- --- --- 1.09996652603149 8.04954051971436 6.14949607849121 2.87288784980774 0.828612983226776 0.0676269978284836 0.219482004642487 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2G11.11c /GEN=prh1 /DEF=RNA helicase (PMID 1454545) --- --- --- --- --- --- SPAC2G11.11c // |prh1||RNA helicase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.80089305065984 7.3179868016128 -2.98530518558816 5.59062110796919 2.61179570634087 Max fold change at or above threshold 3 7.3179868016128 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780002_at SPAC6G9.07c.S1 --- 7.31741962899801 --- --- --- --- 5.16058158874512 6.76528787612915 1.5562459230423 1.12810564041138 0.366210997104645 0.334473013877869 0.533936023712158 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G9.07c /GEN=arc4 /DEF=ARP23 actin-organizing complex --- --- --- --- --- --- AB010050 // Schizosaccharomyces pombe mRNA for 20 kd actin related protein complex, partial cds. // gb // 9 // --- /// SPAC6G9.07c // |arc4||ARP2/3 actin-organizing complex Arc4p subunit|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.79064475140604 1.31095454258175 -7.31741962899801 -3.31604504939471 -4.57455525784203 Max fold change at or above threshold 2 7.31741962899801 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773769_at YHR022C-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 7.31733807763767 22.2294616699219 4.53157103061676 --- --- --- --- 3.55393767356873 26.0053634643555 18.4535598754883 5.50920438766479 0.466064006090164 0.00415039015933871 0.00415039015933871 0.029052734375 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR022C-A /GEN=ECM12 /DB_XREF=GI:33438805 /SEG=NC_001140:-151209,151298 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Yhr022c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028645 // YHR022C-A SGDID:S0028645, Chr VIII from 151298-151209, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YHR022C-A // cdna:known chromosome:SGD1:VIII:151209:151298:-1 gene:YHR022C-A // ensembl // 11 // --- --- No cerevisiae_gene 2.90292202052891 7.31733807763767 1.27396593184289 5.19242642118649 1.55016910640773 Max fold change at or above threshold 4 7.31733807763767 Max fold change at or above threshold -0.918142331023992 1.17959738984561 0.473997732158251 -0.735452790979872 13.3805163502693 10.702674677619 0.799870079558149 APPAPP Called_P_>2EXP 2 0 APPP 1 3 0 Yes Yes 2 < x = 3
1771406_at SPAC8E11.04c.S1 --- 7.30552398514441 --- --- --- --- 1.41032910346985 10.3031930923462 7.35414934158325 0.393042862415314 0.633789002895355 0.274170011281967 0.0561522990465164 0.805419981479645 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8E11.04c /DEF=lysophospholipase (predicted) --- --- --- --- --- --- SPAC8E11.04c // |||lysophospholipase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.10879882150656 7.30552398514441 4.26606037953128 5.21449165552193 -3.58823232357698 Max fold change at or above threshold 2 7.30552398514441 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1773390_at SPAC19G12.07c.S1 --- 7.30530189076887 --- --- --- --- 7.52471590042114 2.98549962043762 2.540522813797 2.14580059051514 0.398925989866257 0.533936023712158 0.24609400331974 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19G12.07c /GEN=rsd1 /DEF=involved in mRNA splicing (implicated) --- --- --- --- --- --- SPAC19G12.07c // |rsd1||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.48004265922697 -2.52042098713051 -7.30530189076887 -2.9618769253148 -3.50671722884311 Max fold change at or above threshold 3 7.30530189076887 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778590_at SPBC4B4.08.S1 --- 7.30124683057685 --- --- --- --- 5.51189994812012 4.08463191986084 1.43962979316711 1.17177867889404 0.194580003619194 0.274170011281967 0.366210997104645 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4B4.08 /GEN=ght2 /DEF=hexose transporter (PMID 10735857) --- --- --- --- --- --- AF017180 // Schizosaccharomyces pombe hexose transporter (Ght2) mRNA, complete cds. // gb // 11 // --- /// SPBC4B4.08 // |ght2||hexose transporter |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.30124683057685 -1.34942390312317 -3.96068776621602 -3.82869260853112 -4.70387458604589 Max fold change at or above threshold 2 7.30124683057685 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772430_at SPAC1687.21.S1 --- 7.30057344732848 --- --- --- --- 2.09694576263428 15.3089065551758 13.6139030456543 10.5687122344971 0.665526986122131 0.219482004642487 0.334473013877869 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.21 /DEF=phosphoglycerate mutase family (predicted) --- --- --- --- --- --- SPAC1687.21 // ||SPAC222.01|phosphoglycerate mutase family |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.42900923091476 7.30057344732848 1.14906901788106 6.49225329917542 5.04005035457864 Max fold change at or above threshold 3 7.30057344732848 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778837_at SPCC126.12.S1 --- 7.29955900319109 --- --- --- --- 1.27219653129578 0.606464624404907 1.26441693305969 0.174284026026726 0.753906011581421 0.850341975688934 0.725830018520355 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC126.12 /DEF=DUF34 --- --- --- --- --- --- SPCC126.12 // |||DUF34|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.56486678658684 -2.09772586907953 -6.08320447965475 -1.00615271595364 -7.29955900319109 Max fold change at or above threshold 0 7.29955900319109 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777427_at SPBC32F12.05c.S1 --- 7.29912326710135 --- --- --- --- 0.223874449729919 0.331322610378265 1.63408720493317 1.40867233276367 0.991943001747131 0.780517995357513 0.633789002895355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32F12.05c /GEN=cwf12 /DEF=involved in mRNA splicing (predicted) --- --- --- --- --- --- SPBC32F12.05c // |cwf12||complexed with Cdc5p |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.50724003525036 1.47994829592198 3.85923764440267 7.29912326710135 6.29224252460736 Max fold change at or above threshold 0 7.29912326710135 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777653_at SPBC28E12.01c.S1 --- 7.29602704820607 --- --- --- --- 0.447287052869797 0.651391565799713 2.85266733169556 1.97228038311005 0.828612983226776 0.888427972793579 0.5 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC28E12.01c /GEN=apc13 /DEF=anaphase-promoting complex (APC) (PMID 12477395) --- --- --- --- --- --- SPBC28E12.01c // |apc13|SPBC9B6.12c|anaphase-promoting complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 7.29602704820607 1.45631661283371 1.2218946070627 6.3777104957383 4.40942873364181 Max fold change at or above threshold 1 7.29602704820607 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769786_at YOR161C-C.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 7.29571477971882 37.9181175231934 189.601837158203 --- --- --- --- 195.088455200195 49.0960922241211 26.7401428222656 184.115219116211 0.000732421991415322 0.0107421996071935 0.014160200022161 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR161C-C /GEN=PNS1 /DB_XREF=GI:33438884 /SEG=NC_001147:-639121,639267 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Yor161c-cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028712 // span:20-37 // numtm:1 S0028712 // YOR161C-C SGDID:S0028712, Chr XV from 639267-639121, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YOR161C-C // cdna:known chromosome:SGD1:XV:639121:639267:-1 gene:YOR161C-C // ensembl // 11 // --- --- No cerevisiae_gene -1.97000094992215 -3.97360454493255 -1.63936504484677 -7.29571477971882 -1.0595998317611 Max fold change at or above threshold 4 7.29571477971882 Max fold change at or above threshold 0.922480400402859 -0.733459769614745 -0.98703546288221 0.798014832094096 113.759977340698 88.1628247320809 0.774989823249026 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1778766_at YKL120W.S1 Mitochondrial inner membrane transporter, transports oxaloacetate, sulfate, and thiosulfate; member of the mitochondrial carrier family 7.29535376586387 91.235767364502 641.308380126953 OAC1 8272 // sulfate transport // inferred from direct assay /// 15729 // oxaloacetate transport // inferred from direct assay 5743 // mitochondrial inner membrane // inferred from direct assay 227 // oxaloacetate carrier activity // inferred from direct assay /// 8271 // sulfate porter activity // inferred from direct assay 611.894958496094 83.8746109008789 98.596923828125 670.721801757813 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL120W /GEN=OAC1 /DB_XREF=GI:6322729 /SEG=NC_001143:+216990,217964 /DEF=Mitochondrial inner membrane transporter, transports oxaloacetate, sulfate, and thiosulfate; member of the mitochondrial carrier family /NOTE=Oac1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 10428783]; go_function: oxaloacetate carrier activity [goid GO:0000227] [evidence IDA] [pmid 10428783]; go_function: sulfate porter activity [goid GO:0008271] [evidence IDA] [pmid 10428783]; go_process: oxaloacetate transport [goid GO:0015729] [evidence IDA] [pmid 10428783]; go_process: sulfate transport [goid GO:0008272] [evidence IDA] [pmid 10428783] --- --- --- --- --- S0001603 // span:21-43 // numtm:1 S0001603 // OAC1 SGDID:S0001603, Chr XI from 216990-217964, Verified ORF // sgd // 11 // --- /// GENSCAN00000018327 // cdna:Genscan chromosome:SGD1:XI:216990:217964:1 // ensembl // 11 // --- /// GENEFINDER00000023061 // cdna:GeneFinder chromosome:SGD1:XI:217155:217964:1 // ensembl // 11 // --- /// YKL120W // cdna:known chromosome:SGD1:XI:216990:217964:1 gene:YKL120W // ensembl // 11 // --- --- No cerevisiae_gene 1.78487059771955 -7.29535376586387 1.13287739293648 -6.20602484072175 1.09613879383204 Max fold change at or above threshold 4 7.29535376586387 Max fold change at or above threshold 0.771070162002998 -0.886514534858253 -0.84029760264769 0.955741975502945 366.272073745728 318.548034736962 0.869703309562454 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769652_at SPAC959.07.S1 --- 7.29490431589034 --- --- --- --- 6.03352737426758 15.0786209106445 8.515944480896 0.827087938785553 0.149657994508743 0.696289002895355 0.466064006090164 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC959.07 /GEN=rps403 /DEF=40S ribosomal protein S4 --- --- --- --- --- --- AB018354 // Schizosaccharomyces pombe mRNA for ribosomal protein S4, partial cds. // gb // 11 // --- /// SPAC959.07 // |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.88584048453602 2.49913855946911 -1.10856314606631 1.411437116738 -7.29490431589034 Max fold change at or above threshold 3 7.29490431589034 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771294_at SPAC23H4.14.S1 --- 7.2943534289967 --- --- --- --- 0.974006712436676 7.10474920272827 4.2573676109314 4.16973352432251 0.303710997104645 0.274170011281967 0.194580003619194 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H4.14 /GEN=vps39 /DEF=CNH domain --- --- --- --- --- --- SPAC23H4.14 // |vam6|vps39|HOPS complex subunit Vam6 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.64531998753329 7.2943534289967 1.64696485632779 4.37098385110789 4.2810110762903 Max fold change at or above threshold 3 7.2943534289967 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773752_at SPCC553.04.S1 --- 7.29267405740537 --- --- --- --- 5.61804866790771 8.50400257110596 7.39138746261597 1.59864449501038 0.149657994508743 0.149657994508743 0.149657994508743 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC553.04 /GEN=cyp9 /DEF=cyclophilin --- --- --- --- --- --- SPCC553.04 // |cyp9||cyclophilin|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.11390991209379 1.51369328992891 -7.29267405740537 1.3156503084137 -3.51425766356594 Max fold change at or above threshold 3 7.29267405740537 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779990_at SPAC22E12.16c.S1 --- 7.28838250971081 --- --- --- --- 5.91911172866821 3.66347002983093 6.86326789855957 1.90576064586639 0.129638999700546 0.334473013877869 0.0375977009534836 0.24609400331974 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22E12.16c /GEN=pik1 /DEF=phosphatidylinositol kinase --- --- --- --- --- --- SPAC22E12.16c // |pik1||phosphatidylinositol kinase Pik1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.28838250971081 -1.61571179250001 1.13299920721982 1.15950977328549 -3.10590511012325 Max fold change at or above threshold 3 7.28838250971081 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1775943_at SPBP23A10.06.S1 --- 7.28786176553016 --- --- --- --- 7.79329586029053 11.681435585022 6.31654262542725 6.19644451141357 0.274170011281967 0.24609400331974 0.194580003619194 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP23A10.06 /DEF=mitochondrial carrier --- --- --- --- --- --- SPBP23A10.06 // |||mitochondrial carrier|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.71991063554836 1.49890826608327 -7.28786176553016 -1.23379138279201 -1.25770445389055 Max fold change at or above threshold 4 7.28786176553016 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779698_at SPBC6B1.06c.S1 --- 7.2873521920397 --- --- --- --- 0.289485841989517 0.503372311592102 0.95502096414566 2.10958528518677 0.823486328125 0.919434010982513 0.753906011581421 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC6B1.06c /GEN=ucp2 /DEF=ubiquitin C-terminal hydrolase activity --- --- --- --- --- --- SPBC6B1.06c // |ubp14|ucp2|ubiquitin C-terminal hydrolase activity|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 6.10505446370543 1.73884949997081 -2.89485841989517 3.29902477296366 7.2873521920397 Max fold change at or above threshold 0 7.2873521920397 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776222_at SPAC227.05.S1 --- 7.28590932442872 --- --- --- --- 0.299448430538177 0.496533364057541 0.151650652289391 1.84954941272736 0.828612983226776 0.888427972793579 0.884033203125 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC227.05 /DEF=prefoldin (subunit 4) --- --- --- --- --- --- SPAC227.05 // |||prefoldin |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 7.28590932442872 1.65815984797501 4.01196358773075 -1.97459375226919 6.17652064298114 Max fold change at or above threshold 0 7.28590932442872 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771251_at SPAC22H10.04.S1 --- 7.28411448840826 --- --- --- --- 4.18310928344727 1.16715061664581 1.27599668502808 0.574278354644775 0.5 0.870360970497131 0.805419981479645 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22H10.04 /DEF=serinethreonine protein phosphatase (predicted) --- --- --- --- --- --- SPAC22H10.04 // |||protein phosphatase type 2A|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.04668036048464 -3.5840355338789 -1.12428918244976 -3.27830732832603 -7.28411448840826 Max fold change at or above threshold 1 7.28411448840826 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775607_at SPBC29A3.17.S1 --- 7.28331137219755 --- --- --- --- 4.77783155441284 2.97257280349731 6.12072229385376 2.83721470832825 0.0805663987994194 0.633789002895355 0.129638999700546 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A3.17 /GEN=gef3 /DEF=RhoGEF --- --- --- --- --- --- SPBC29A3.17 // |gef3||RhoGEF|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.77749598892088 -1.60730514280141 -7.28331137219755 1.28106699119617 -1.68398660150329 Max fold change at or above threshold 4 7.28331137219755 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779002_at SPCC16C4.20c.S1 --- 7.27985978126526 --- --- --- --- 0.727985978126526 0.557075202465057 0.786430478096008 0.0499095246195793 0.725830018520355 0.932372987270355 0.780517995357513 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16C4.20c /DEF=sequence orphan --- --- --- --- --- --- SPCC16C4.20c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.56983301699142 -1.30680018587291 -5.07877561683485 1.08028245285698 -7.27985978126526 Max fold change at or above threshold 0 7.27985978126526 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769327_at SPCC1840.01c.S1 --- 7.27855961388531 --- --- --- --- 0.500604391098022 1.004753947258 3.64367890357971 0.570060193538666 0.943848013877869 0.696289002895355 0.398925989866257 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1840.01c /GEN=mog1 /DEF=GTPase (PMID 11290708) --- --- --- --- --- --- SPCC1840.01c // |mog1|SPCC790.04c|Ran interacting protein Mog1p |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.22509021582741 2.00708176980664 -1.13893397652917 7.27855961388531 1.13874389373273 Max fold change at or above threshold 1 7.27855961388531 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774672_at SPAC2E1P3.05c.S1 --- 7.27554840845009 --- --- --- --- 5.70999908447266 5.03943395614624 6.31247806549072 1.63355243206024 0.366210997104645 0.398925989866257 0.274170011281967 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2E1P3.05c /DEF=conserved fungal protein --- --- --- --- --- --- SPAC2E1P3.05c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.0936060996526 -1.13306358098186 -7.27554840845009 1.10551297331315 -3.49544892003937 Max fold change at or above threshold 3 7.27554840845009 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769780_at SPBC1652.01.S1 --- 7.27388569166451 --- --- --- --- 5.29090309143066 14.2742862701416 1.00138092041016 6.53632926940918 0.633789002895355 0.62548828125 0.780517995357513 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1652.01 /DEF=hypothetical protein --- --- --- --- --- --- SPBC1652.01 // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.27388569166451 2.69789221678635 1.96488824448252 -5.28360685089103 1.235390094367 Max fold change at or above threshold 3 7.27388569166451 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772614_at SPAC12B10.05.S1 --- 7.27307668376497 --- --- --- --- 2.13894152641296 0.353490471839905 0.294090330600739 3.971515417099 0.398925989866257 0.96826171875 0.753906011581421 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12B10.05 /DEF=metallopeptidase (predicted) --- --- --- --- --- --- SPAC12B10.05 // |||metallopeptidase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.32589644161116 -6.0509170594609 -7.05119835843007 -7.27307668376497 1.85676670823222 Max fold change at or above threshold 1 7.27307668376497 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777485_at SPAC23C4.14.S1 --- 7.27210757855067 --- --- --- --- 0.822495341300964 5.98127460479736 5.04989004135132 1.33138203620911 0.805419981479645 0.366210997104645 0.5 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C4.14 /DEF=beta-mannosyltransferase (predicted) --- --- --- --- --- --- SPAC23C4.14 // |alg1||mannosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.4125250322809 7.27210757855067 1.13928006747067 6.13971871666016 1.61871073227384 Max fold change at or above threshold 2 7.27210757855067 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777932_at SPCC1795.03.S1 --- 7.27057644408764 --- --- --- --- 7.91785526275635 5.78128290176392 2.21078634262085 4.05995416641235 0.665526986122131 0.466064006090164 0.696289002895355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1795.03 /GEN=gms1 /DEF=UDP-galactose transporter --- --- --- --- --- --- AB023425 // Schizosaccharomyces pombe SpUGT mRNA for UDP-galactose transporter, complete cds. // gb // 11 // --- /// SPCC1795.03 // |gms1||UDP-galactose transporter|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.07490129748088 -1.36956717000314 -7.27057644408764 -3.58146561253398 -1.95023267214691 Max fold change at or above threshold 3 7.27057644408764 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775469_at SPAC12G12.04.S1 --- 7.26711786301286 --- --- --- --- 2.32819318771362 7.36995697021484 16.9192543029785 0.690991699695587 0.524658203125 0.633789002895355 0.129638999700546 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12G12.04 /GEN=mcp60 /DEF=heat shock protein 60 --- --- --- --- --- --- SPAC12G12.04 // |mcp60|hsp60|heat shock protein 60|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.87997637407509 3.16552638720347 5.06100530969826 7.26711786301286 -3.36935044044566 Max fold change at or above threshold 2 7.26711786301286 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776747_at SPAPB17E12.10c.S1 --- 7.26643853349867 --- --- --- --- 0.325639814138412 1.04122674465179 2.3662416934967 0.752460956573486 0.99804699420929 0.943848013877869 0.850341975688934 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB17E12.10c /DEF=SAM-dependent methyltransferase (predicted) --- --- --- --- --- --- SPAPB17E12.10c // |||SAM-dependent methyltransferase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.62703585789581 3.19747985180099 1.97213384255883 7.26643853349867 2.31071547121586 Max fold change at or above threshold 0 7.26643853349867 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772428_at SPBC1773.10c.S1 --- 7.26576354961517 --- --- --- --- 0.703525245189667 2.54846811294556 0.76056319475174 3.37688636779785 0.870360970497131 0.753906011581421 0.976073980331421 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1773.10c /DEF=asparagine-tRNA ligase (predicted) --- --- --- --- --- --- SPBC1773.10c // |||asparagine-tRNA ligase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 7.26576354961517 3.62242596178408 2.31274803135931 1.08107448872953 4.79995052187141 Max fold change at or above threshold 2 7.26576354961517 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774674_at SPBC2D10.17.S1 --- 7.26477101868872 --- --- --- --- 1.36798357963562 0.615631103515625 9.93808746337891 2.15064835548401 0.567627012729645 0.5927734375 0.274170011281967 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2D10.17 /DEF=zinc finger protein --- --- --- --- --- --- SPBC2D10.17 // |clr1||cryptic loci regulator Clr1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.34620008474548 -2.22208327653299 1.50048111285648 7.26477101868872 1.57213024154637 Max fold change at or above threshold 1 7.26477101868872 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-DapX-3_at AFFX-DapX-3 --- 7.26329334393487 --- --- --- --- 5.97895812988281 1.21063554286957 3.22724747657776 1.5119960308075 0.45541250705719 0.814869344234467 0.425962299108505 0.686291992664337 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2684-3130 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. --- --- --- --- --- --- L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-DapX-3 // --- // unknown // --- // --- /// AFFX-DapX-3 // --- // unknown // --- // --- /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-DapX-3 // --- // unknown // --- // --- /// AFFX-DapX-3 // --- // unknown // --- // --- /// AFFX-DapX-3 // --- // gb // --- // --- /// L38424 // Bacillus subtilis /REF=L38424 /DEF=B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1439-1846 of L38424 /LEN=1931 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-DapX-3 // B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2684-3130 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // --- // --- /// L38424 // Bacillus subtilis /REF=L38424 /DEF=B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 /LEN=1931 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-DapX-3 // B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2684-3130 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // --- // --- /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-DapX-3 // --- // unknown // --- // --- /// AFFX-DapX-3 // --- // affx // --- // --- /// AFFX-DapX-3 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-DapX-3 // --- // affx // --- // --- /// AFFX-DapX-3 // --- // affx // --- // --- /// AFFX-DapX-3 // --- // affx // --- // --- /// AFFX-DapX-3 // --- // affx // --- // --- /// AFFX-DapX-3 // --- // affx // --- // --- /// AFFX-DapX-3 // --- // affx // --- // --- /// AFFX-DapX-3 // --- // affx // --- // --- /// AFFX-DapX-3 // --- // affx // --- // --- /// AFFX-DapX-3 // --- // affx // --- // --- /// AFFX-DapX-3 // --- // affx // --- // --- /// AFFX-DapX-3 // --- // affx // --- // --- NM_057911 // refseq // 1 // Cross Hyb Matching Probes /// CG6382-RA // flybase // 1 // Cross Hyb Matching Probes /// GENSCAN00000063023 // ensembl // 1 // Cross Hyb Matching Probes /// 50812173 // gb // 20 // Negative Strand Matching Probes AFFX_control No -7.26329334393487 -4.93869370108769 -2.0425271280098 -1.85264940890837 -3.95434776815498 Max fold change at or above threshold 2 7.26329334393487 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773190_at SPBP4H10.21c.S1 --- 7.25704141612097 --- --- --- --- 11.93505859375 5.09623432159424 4.53491687774658 1.75806522369385 0.0805663987994194 0.432372987270355 0.149657994508743 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP4H10.21c /DEF=GINS complex (predicted) --- --- --- --- --- --- SPBP4H10.21c // |||GINS complex subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.42535687330372 -2.3419367793152 -7.25704141612097 -2.63181419097599 -6.78874619263181 Max fold change at or above threshold 3 7.25704141612097 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772315_at SPAC1F3.04c.S1 --- 7.25555589015255 --- --- --- --- 4.65298080444336 0.756466209888458 2.04222059249878 1.62999105453491 0.366210997104645 0.870360970497131 0.828612983226776 0.45751953125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F3.04c /DEF=conserved protein --- --- --- --- --- --- SPAC1F3.04c // |||conserved protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.25555589015255 -6.1509433516263 -1.04366155275064 -2.27839285409915 -2.85460511669556 Max fold change at or above threshold 1 7.25555589015255 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769594_at SPAC139.03.S1 --- 7.25198258859998 --- --- --- --- 0.93164736032486 6.75629043579102 0.875871241092682 1.75732624530792 0.65771484375 0.533936023712158 0.753906011581421 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC139.03 /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPAC139.03 // |||transcriptio factor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.45858579844827 7.25198258859998 1.93085035497061 -1.06368072910191 1.88625688231989 Max fold change at or above threshold 1 7.25198258859998 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775383_at SPAC25G10.09c.S1 --- 7.24362395140101 --- --- --- --- 6.18582582473755 1.62390208244324 1.41553103923798 2.3730628490448 0.432372987270355 0.828612983226776 0.780517995357513 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25G10.09c /DEF=actin cortical patch component (predicted) --- --- --- --- --- --- SPAC25G10.09c // ||SPAC27F1.01c|actin cortical patch component |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.24362395140101 -3.80923572401033 -2.54521869602986 -4.36996833927963 -2.60668436456601 Max fold change at or above threshold 1 7.24362395140101 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777426_at SPAC9G1.05.S1 --- 7.2434624407121 --- --- --- --- 0.647968411445618 1.9973384141922 1.4646383523941 3.05882239341736 0.888427972793579 0.665526986122131 0.696289002895355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9G1.05 /DEF=WD repeat protein --- --- --- --- --- --- SPAC9G1.05 // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 7.2434624407121 3.08246263075716 -1.45414297626764 2.26035455822066 4.7206350485406 Max fold change at or above threshold 1 7.2434624407121 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769401_at SPBC23E6.04c.S1 --- 7.24312528985704 --- --- --- --- 1.24511766433716 0.932775557041168 9.0185432434082 6.72855806350708 0.780517995357513 0.985840022563934 0.567627012729645 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23E6.04c /DEF=ribonucleoprotein (RNP) complex (predicted) (PMID 12068309) --- --- --- --- --- --- SPBC23E6.04c // |||U3 snoRNP protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.36102021496198 -1.33485237143945 -1.37775126723837 7.24312528985704 5.40395358304474 Max fold change at or above threshold 2 7.24312528985704 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780145_at SPAC11E3.03.S1 --- 7.24080668454967 --- --- --- --- 8.4655122756958 1.16913938522339 5.48407983779907 4.52168750762939 0.030273400247097 0.5 0.274170011281967 0.0461426004767418 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11E3.03 /GEN=pcs1 /DEF=monopolin complex component (predicted) --- --- --- --- --- --- SPAC11E3.03 // |pcs1||monopolin complex component |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.07779695173535 -7.24080668454967 -5.71363110826826 -1.5436522673042 -1.87220197358 Max fold change at or above threshold 3 7.24080668454967 Max fold change at or above threshold PPAAAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1777669_at YLR042C.S1 Hypothetical protein 7.23487540333902 36.2155847549438 183.867118835449 --- --- 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 169.213119506836 49.0426368713379 23.3885326385498 198.521118164063 0.000732421991415322 0.00415039015933871 0.0107421996071935 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR042C /GEN=RIC1 /DB_XREF=GI:6323071 /SEG=NC_001144:-229967,230452 /DEF=Hypothetical ORF /NOTE=Ylr042cp; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004032 // YLR042C SGDID:S0004032, Chr XII from 230452-229967, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017853 // cdna:Genscan chromosome:SGD1:XII:229967:230452:-1 // ensembl // 11 // --- /// YLR042C // cdna:known chromosome:SGD1:XII:229967:230452:-1 gene:YLR042C // ensembl // 11 // --- --- No cerevisiae_gene -1.8494100660011 -3.45032670145291 -1.36637654734702 -7.23487540333902 1.17320169229575 Max fold change at or above threshold 4 7.23487540333902 Max fold change at or above threshold 0.682354766692546 -0.703422687881391 -0.99925972276225 1.02032764395109 110.041351795197 86.7170137880797 0.788040244629792 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1773662_at YGR066C.S1 Hypothetical protein 7.23171553841628 164.755699157715 1111.37115478516 --- --- --- --- 1089.64074707031 150.675277709961 178.836120605469 1133.1015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR066C /GEN=VHT1 /DB_XREF=GI:6321503 /SEG=NC_001139:-620923,621801 /DEF=Hypothetical ORF /NOTE=Ygr066cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003298 // YGR066C SGDID:S0003298, Chr VII from 621803-620925, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019390 // cdna:Genscan chromosome:SGD1:VII:620925:621803:-1 // ensembl // 11 // --- /// GENEFINDER00000021486 // cdna:GeneFinder chromosome:SGD1:VII:620925:621803:-1 // ensembl // 11 // --- /// YGR066C // cdna:known chromosome:SGD1:VII:620925:621803:-1 gene:YGR066C // ensembl // 11 // --- --- No cerevisiae_gene 1.55041603291473 -7.23171553841628 1.0433740066054 -6.09295674375634 1.03988545357407 Max fold change at or above threshold 4 7.23171553841628 Max fold change at or above threshold 0.825647084595909 -0.891122265432242 -0.8396340334029 0.905109214239234 638.063426971436 546.937460961168 0.857183530416723 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776291_at SPBC1289.13c.S1 --- 7.22531607112325 --- --- --- --- 6.48093032836914 0.896975338459015 18.3934936523438 1.9176709651947 0.030273400247097 0.303710997104645 0.030273400247097 0.219482004642487 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1289.13c /DEF=galactosyltransferase --- --- --- --- --- --- SPBC1289.13c // |||alpha-1,2-galactosyltransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.69052928389929 -7.22531607112325 1.20603316956426 2.83809464388615 -3.37958411322723 Max fold change at or above threshold 2 7.22531607112325 Max fold change at or above threshold PPAAPA No 4 0 PAPA 2 2 0 No No 1 < x = 2
1769843_at SPAC139.06.S1 --- 7.22338708582024 --- --- --- --- 1.59281158447266 1.25116348266602 0.504936277866364 0.220507577061653 0.567627012729645 0.696289002895355 0.696289002895355 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC139.06 /DEF=histone acetyltransferase (type B) (catalytic subunit) (predicted) --- --- --- --- --- --- SPAC139.06 // ||SPAC23C4.01|histone acetyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.02393187250634 -1.27306431696572 -4.1407832051477 -3.15448038553136 -7.22338708582024 Max fold change at or above threshold 0 7.22338708582024 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774726_at SPAC1399.02.S1 --- 7.22317010780395 --- --- --- --- 4.68235015869141 0.837952673435211 3.90760278701782 3.15508031845093 0.633789002895355 0.773681640625 0.753906011581421 0.26708984375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1399.02 /DEF=membrane transporter --- --- --- --- --- --- SPAC1399.02 // |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.22317010780395 -5.58784559931765 -4.30919798916381 -1.19826666473049 -1.48406686552764 Max fold change at or above threshold 3 7.22317010780395 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-U89963-1_s_at AFFX-Sc-U89963-1 --- 7.22275966194758 --- --- --- --- 0.341167807579041 0.364219427108765 0.423554569482803 1.87755477428436 0.828612983226776 0.870360970497131 0.805419981479645 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL U89963 /FEA=CDS_1 /DB_XREF=AAB68656.1 GI:2293128 /PROD=VP16 /NOTE=Activation domain of VP16 --- --- --- --- --- --- AFFX-Sc-U89963-1 // --- // affx // --- // --- --- No No 2.37547376361978 1.06756680735296 7.22275966194758 1.24148457173725 5.50331752461544 Max fold change at or above threshold 0 7.22275966194758 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770138_at SPAC4F10.13c.S1 --- 7.22251871806282 --- --- --- --- 4.61266803741455 1.23906540870667 0.830463945865631 0.638650894165039 0.466064006090164 0.753906011581421 0.633789002895355 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F10.13c /DEF=GYF domain --- --- --- --- --- --- SPAC4F10.13c // |||GYF domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.78211966197932 -3.72269938697526 -6.68809223633071 -5.55432666328043 -7.22251871806282 Max fold change at or above threshold 1 7.22251871806282 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770336_at SPCC553.08c.S1 --- 7.21986340159892 --- --- --- --- 1.08831584453583 1.0026627779007 0.777262568473816 0.150739118456841 0.953857004642487 0.962401986122131 0.919434010982513 0.999267995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC553.08c /DEF=translation elongation factor (predicted) --- --- --- --- --- --- SPCC553.08c // |||GTPase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 5.20859043612132 -1.08542559724264 -1.24521711922486 -1.40019073177906 -7.21986340159892 Max fold change at or above threshold 0 7.21986340159892 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776546_at YDL037C.S1 Protein of unconfirmed function, similar to cell surface flocculin Muc1p; ORF exhibits genomic organization compatible with a translational readthrough-dependent mode of expression 7.21955370053662 436.83024597168 80.8526229858398 BSC1 --- --- --- 80.7359466552734 290.782989501953 582.877502441406 80.9692993164063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL037C /GEN=BSC1 /DB_XREF=GI:6320167 /SEG=NC_001136:-384598,385584 /DEF=Bypass of Stop Codon transcript encoded by this ORF shows a high level of stop codon bypass /NOTE=Bsc1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002195 // BSC1 SGDID:S0002195, Chr IV from 385584-384598, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023424 // cdna:GeneFinder chromosome:SGD1:IV:382327:385554:-1 // ensembl // 9 // --- /// YDL037C // cdna:known chromosome:SGD1:IV:384598:385584:-1 gene:YDL037C // ensembl // 11 // --- --- No cerevisiae_gene 1.48044399370945 3.60165454854377 -1.41731496103805 7.21955370053662 1.00289031925431 Max fold change at or above threshold 4 7.21955370053662 Max fold change at or above threshold -0.749561466291562 0.134426845075911 1.36371401690973 -0.748579395694079 258.84143447876 237.612918797252 0.917986408457919 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770546_at SPAC6B12.04c.S1 --- 7.21804711360283 --- --- --- --- 1.06796371936798 0.658799886703491 7.7086124420166 1.47662496566772 0.567627012729645 0.5 0.129638999700546 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6B12.04c /DEF=aminotransferase (predicted) --- --- --- --- --- --- SPAC6B12.04c // |||aminotransferase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.56112243201619 -1.62107453404685 -1.0577541307853 7.21804711360283 1.38265461540359 Max fold change at or above threshold 1 7.21804711360283 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777708_at SPBC1A4.11c.S1 --- 7.21770748836793 --- --- --- --- 1.74162614345551 12.5705480575562 12.375373840332 0.785520851612091 0.567627012729645 0.366210997104645 0.24609400331974 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1A4.11c /DEF=hypothetical protein --- --- --- --- --- --- SPBC1A4.11c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.63067717917703 7.21770748836793 2.7961167759847 7.10564312945971 -2.21716093198703 Max fold change at or above threshold 2 7.21770748836793 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777089_at SPAC13C5.06c.S1 --- 7.21710575148239 --- --- --- --- 5.44197654724121 0.754038631916046 4.04818058013916 1.99053192138672 0.219482004642487 0.753906011581421 0.567627012729645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13C5.06c /DEF=sequence orphan --- --- --- --- --- --- SPAC13C5.06c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- AB084817 // gb // 6 // Negative Strand Matching Probes /// SPNCRNA.05 // sanger // 6 // Negative Strand Matching Probes No No -1.33214911280343 -7.21710575148239 -2.3652897599395 -1.34430182634149 -2.73393080953458 Max fold change at or above threshold 2 7.21710575148239 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773435_at SPAC29E6.03c.S1 --- 7.21572415086258 --- --- --- --- 4.67920160293579 0.648472905158997 2.49913048744202 1.39963757991791 0.274170011281967 0.753906011581421 0.601073980331421 0.091064453125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29E6.03c /GEN=uso1 /DEF=involved in intracellular protein transport --- --- --- --- --- --- SPAC29E6.03c // |uso1|SPAC30.07c|armadillo repeat protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.6621029818184 -7.21572415086258 -1.63601634483027 -1.872331847596 -3.34315230604928 Max fold change at or above threshold 1 7.21572415086258 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777406_at SPAC9G1.10c.S1 --- 7.21528000167348 --- --- --- --- 5.05750942230225 0.700944304466248 2.09530067443848 1.03182935714722 0.432372987270355 0.919434010982513 0.753906011581421 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9G1.10c /DEF=inositol polyphosphate phosphatase (predicted) --- --- --- --- --- --- SPAC9G1.10c // |||inositol polyphosphate phosphatase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.99595328132542 -7.21528000167348 -4.83797207200694 -2.41373922320605 -4.90149789523837 Max fold change at or above threshold 1 7.21528000167348 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778429_at SPBC21C3.11.S1 --- 7.20946796796955 --- --- --- --- 1.28424143791199 5.85674953460693 9.18543148040771 9.25869750976563 0.334473013877869 0.129638999700546 0.334473013877869 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21C3.11 /DEF=UBX domain --- --- --- --- --- --- SPBC21C3.11 // |||UBX domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.05397643255851 4.56047388108677 1.23025744551331 7.15241792488962 7.20946796796955 Max fold change at or above threshold 3 7.20946796796955 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769316_s_at SPAC750.05c.S1 --- 7.2092400829481 --- --- --- --- 4.39235591888428 0.794400453567505 6.97503328323364 1.741246342659 0.129638999700546 0.888427972793579 0.0676269978284836 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC750.05c /DEF=telomeric duplication --- --- --- --- --- --- SPAC750.05c // |||telomeric duplication|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPAC977.01 // |||telomeric duplication|Schizosaccharomyces pombe|chr 1||Partial|Manual // sanger // 11 // --- /// SPBPB2B2.19c // ||SPAC1348.02|telomeric duplication|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPBC1348.02 // ||SPAC1348.02|B66205|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.2092400829481 -5.52914578429434 1.64893309817642 1.58799364442338 -2.5225356178936 Max fold change at or above threshold 2 7.2092400829481 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771166_at SPBC4F6.14.S1 --- 7.2076102173303 --- --- --- --- 1.25012981891632 7.65708112716675 6.35656261444092 9.01044845581055 0.7470703125 0.194580003619194 0.129638999700546 0.00805663969367743 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4F6.14 /DEF=RNA-binding protein --- --- --- --- --- --- SPBC4F6.14 // |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.04727168284773 6.12502878605385 3.97299932515477 5.0847220170711 7.2076102173303 Max fold change at or above threshold 3 7.2076102173303 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1775888_at SPBC12C2.13c.S1 --- 7.20602176579466 --- --- --- --- 1.12264597415924 3.0832896232605 8.08981132507324 2.15095138549805 0.696289002895355 0.398925989866257 0.149657994508743 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12C2.13c /GEN=fnx1 /DEF=MFS multidrug efflux transporter --- --- --- --- --- --- SPBC12C2.13c // |fnx1|SPBC21D10.04c|MFS multidrug efflux transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.68290926713924 2.74644874183921 2.84888361875954 7.20602176579466 1.9159658832865 Max fold change at or above threshold 2 7.20602176579466 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776485_at YHL048W.S1 Hypothetical protein /// Nuclear membrane protein, member of a family of conserved, often subtelomerically-encoded proteins; regulation suggests a potential role in the unfolded protein response 7.2044717939865 87.1058883666992 20.8704957962036 COS8 6986 // response to unfolded protein // inferred from expression pattern 5635 // nuclear membrane // inferred from direct assay --- 12.7279586791992 82.513557434082 91.6982192993164 29.013032913208 0.0805663987994194 0.0107421996071935 0.00122069998178631 0.018554700538516 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL048W /GEN=COS8 /DB_XREF=GI:6321739 /SEG=NC_001140:+6400,7545 /DEF=Nuclear membrane protein, member of a family of conserved, often subtelomerically-encoded proteins; regulation suggests a potential role in the unfolded protein response /NOTE=Cos8p; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 12051917]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to unfolded protein [goid GO:0006986] [evidence IEP] [pmid 12051917] --- --- --- --- --- S0001040 // span:46-63,73-95,241-263 // numtm:3 S0001040 // COS8 SGDID:S0001040, Chr VIII from 6400-7545, Verified ORF // sgd // 11 // --- /// GENSCAN00000016513 // cdna:Genscan chromosome:SGD1:VIII:6400:7545:1 // ensembl // 11 // --- /// GENEFINDER00000020224 // cdna:GeneFinder chromosome:SGD1:VIII:6400:7545:1 // ensembl // 11 // --- /// YHL048W // cdna:known chromosome:SGD1:VIII:6400:7545:1 gene:YHL048W // ensembl // 11 // --- S0001482 // sgd // 1 // Cross Hyb Matching Probes /// YIR043C // ensembl // 1 // Cross Hyb Matching Probes No cerevisiae_gene 2.40782551959235 6.48285868251054 2.09532548212859 7.2044717939865 2.27947258821816 Max fold change at or above threshold 4 7.2044717939865 Max fold change at or above threshold -1.05808131158971 0.731507155852387 0.967039489810167 -0.640465334072841 53.9881920814514 38.9953332984029 0.72229374229778 APPPPP Called_P_>2EXP 3 0 APPP 1 3 0 Yes Yes 2 < x = 3
1774753_at SPBC3E7.05c.S1 --- 7.20357548886073 --- --- --- --- 2.50732707977295 15.1485776901245 18.0617198944092 17.6955146789551 0.129638999700546 0.111571997404099 0.018554700538516 0.0239257998764515 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3E7.05c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC3E7.05c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.20749847002213 6.0417237991528 6.35165756794186 7.20357548886073 7.05752146248007 Max fold change at or above threshold 4 7.20357548886073 Max fold change at or above threshold APAPPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1774597_at SPAC806.06c.S1 --- 7.20093023266915 --- --- --- --- 0.998954653739929 4.3699893951416 7.1934027671814 3.85662436485291 0.665526986122131 0.601073980331421 0.334473013877869 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC806.06c /DEF=nicotinamide mononucleotide (NMN) adenylyltransferase (putative) --- --- --- --- --- --- SPAC806.06c // |||nicotinamide mononucleotide |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.04847026297283 4.37456232751011 1.25129265609996 7.20093023266915 3.8606600914409 Max fold change at or above threshold 3 7.20093023266915 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774853_at SPBC119.13c.S1 --- 7.1989756899277 --- --- --- --- 1.06166565418243 7.64290523529053 1.65137040615082 5.52246522903442 0.665526986122131 0.171387001872063 0.466064006090164 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC119.13c /GEN=prp31 /DEF=U4U6 x U5 tri-snRNP complex (predicted) --- --- --- --- --- --- SPBC119.13c // |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.19497362253347 7.1989756899277 3.23371424574077 1.55545241540521 5.20169905400882 Max fold change at or above threshold 2 7.1989756899277 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774063_at YER078W-A.S1 Identified by fungal homology and RT-PCR 7.19391970757854 90.1334533691406 14.6171426773071 --- --- --- --- 13.0368537902832 86.480827331543 93.7860794067383 16.1974315643311 0.0805663987994194 0.0107421996071935 0.00122069998178631 0.014160200022161 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER078W-A /GEN=PTP3 /DB_XREF=GI:33438786 /SEG=NC_001137:+318642,318806 /DEF=Identified by fungal homology and RT-PCR /NOTE=Yer078w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028546 // YER078W-A SGDID:S0028546, Chr V from 318642-318806, Uncharacterized ORF // sgd // 11 // --- /// YER078W-A // cdna:known chromosome:SGD1:V:318642:318806:1 gene:YER078W-A // ensembl // 11 // --- --- No cerevisiae_gene 2.97659656834331 6.63356579146419 1.36610897392944 7.19391970757854 1.24243408915144 Max fold change at or above threshold 4 7.19391970757854 Max fold change at or above threshold -0.899775473113593 0.78008470765821 0.947175368469571 -0.827484603014188 52.3752980232239 43.7202895704786 0.834750182253712 APPAPP Called_P_>2EXP 3 0 APPP 1 3 0 Yes Yes 2 < x = 3
1778620_at YNL318C.S1 Protein of unknown function with similarity to hexose transporter family members, expression is induced by low levels of glucose and repressed by high levels of glucose 7.19278201437939 41.4011192321777 10.3991603851318 HXT14 8645 // hexose transport // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from sequence similarity 5354 // galactose transporter activity // inferred from genetic interaction 9.12157344818115 65.609489440918 17.1927490234375 11.6767473220825 0.0239257998764515 0.00195312988944352 0.000244141003349796 0.00585938012227416 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL318C /GEN=HXT14 /DB_XREF=GI:6324011 /SEG=NC_001146:-38706,40328 /DEF=Protein of unknown function with similarity to hexose transporter family members, expression is induced by low levels of glucose and repressed by high levels of glucose /NOTE=Hxt14p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 8929273]; go_function: galactose transporter activity [goid GO:0005354] [evidence IGI] [pmid 10618490]; go_process: hexose transport [goid GO:0008645] [evidence IGI] [pmid 10618490] --- --- --- --- --- S0005262 // span:59-81,118-140,147-169,173-195,208-230,240-262,339-361,376-398,405-427,437-459,471-493,503-522 // numtm:12 S0005262 // HXT14 SGDID:S0005262, Chr XIV from 40328-38706, reverse complement, Verified ORF // sgd // 11 // --- /// YNL318C // cdna:known chromosome:SGD1:XIV:38706:40328:-1 gene:YNL318C // ensembl // 11 // --- YNL319W // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene 1.0194550503243 7.19278201437939 -1.05742945265346 1.88484466206494 1.28012424483748 Max fold change at or above threshold 4 7.19278201437939 Max fold change at or above threshold -0.628733265566027 1.48800490646277 -0.326286890389284 -0.532984750507458 25.9001398086548 26.6863028877094 1.0303536229867 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1778166_at SPCC777.03c.S1 --- 7.19253378697127 --- --- --- --- 6.01603269577026 10.2500782012939 5.92689371109009 0.836427450180054 0.334473013877869 0.0375977009534836 0.194580003619194 0.366210997104645 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC777.03c /DEF=nifs homolog --- --- --- --- --- --- SPCC777.03c // |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.35543860105244 1.70379363272087 -1.09455187696495 -1.01503974746728 -7.19253378697127 Max fold change at or above threshold 3 7.19253378697127 Max fold change at or above threshold APPAAA No 4 0 APAA 3 1 0 No No x = 1
1775273_at SPBC13G1.05.S1 --- 7.18653839735799 --- --- --- --- 1.59308409690857 11.4487600326538 4.33292484283447 2.9509859085083 0.625244140625 0.24609400331974 0.633789002895355 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13G1.05 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC13G1.05 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.7216341391396 7.18653839735799 4.10268069804916 2.71983434599759 1.85237296275494 Max fold change at or above threshold 3 7.18653839735799 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776207_at SPBC25B2.09c.S1 --- 7.18503830211799 --- --- --- --- 4.23743152618408 10.8984422683716 6.75948286056519 0.589757680892944 0.567627012729645 0.0805663987994194 0.129638999700546 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25B2.09c /DEF=arginine-tRNA ligase --- --- --- --- --- --- SPBC25B2.09c // |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.77557145822088 2.57194534024386 -1.45284395870288 1.59518397378147 -7.18503830211799 Max fold change at or above threshold 3 7.18503830211799 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775899_at SPAPB2B4.06.S1 --- 7.18071636952637 --- --- --- --- 3.83941459655762 0.974104881286621 19.9759578704834 6.31809377670288 0.398925989866257 0.398925989866257 0.0375977009534836 0.149657994508743 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB2B4.06 /DEF=hypothetical protein --- --- --- --- --- --- SPAPB2B4.06 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.18071636952637 -3.94147968079826 4.00914896925372 5.20286553278035 1.64558778892168 Max fold change at or above threshold 3 7.18071636952637 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1779402_at YPL227C.S1 UDP-glucose:dolichyl-phosphate glucosyltransferase, involved in asparagine-linked glycosylation in the endoplasmic reticulum 7.17908081008856 122.065818786621 887.088897705078 ALG5 6487 // N-linked glycosylation // traceable author statement 5789 // endoplasmic reticulum membrane // inferred from direct assay 4581 // dolichyl-phosphate beta-glucosyltransferase activity // inferred from direct assay 818.407653808594 130.132690429688 113.998947143555 955.770141601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL227C /GEN=ALG5 /DB_XREF=GI:6325029 /SEG=NC_001148:-120163,121167 /DEF=UDP-glucose:dolichyl-phosphate glucosyltransferase, involved in asparagine-linked glycosylation in the endoplasmic reticulum /NOTE=Alg5p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 9560251]; go_function: dolichyl-phosphate beta-glucosyltransferase activity [goid GO:0004581] [evidence IDA] [pmid 8076653]; go_process: N-linked glycosylation [goid GO:0006487] [evidence TAS] [pmid 8076653] --- --- --- --- --- S0006148 // span:13-35 // numtm:1 S0006148 // ALG5 SGDID:S0006148, Chr XVI from 121167-120163, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017011 // cdna:Genscan chromosome:SGD1:XVI:120163:121167:-1 // ensembl // 11 // --- /// YPL227C // cdna:known chromosome:SGD1:XVI:120163:121167:-1 gene:YPL227C // ensembl // 11 // --- --- No cerevisiae_gene 1.05482015492672 -6.28902431131085 -1.17232768682652 -7.17908081008856 1.16784115734222 Max fold change at or above threshold 4 7.17908081008856 Max fold change at or above threshold 0.704792057022883 -0.840918265071195 -0.877151013403292 1.0132772214516 504.57735824585 445.280692986804 0.88248250879669 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770260_at SPAC56F8.04c.S1 --- 7.17665643080606 --- --- --- --- 9.95924091339111 6.3281307220459 2.51399159431458 4.68924713134766 0.018554700538516 0.303710997104645 0.533936023712158 0.0561522990465164 P A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC56F8.04c /GEN=coq2 /DEF=para-hydroxybenzoate--polyprenyltransferase activity (PMID 11092853) --- --- --- --- --- --- SPAC56F8.04c // |coq2|ppt1|para-hydroxybenzoate--polyprenyltransferase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.14205247925718 -1.57380454842615 -7.17665643080606 -3.96152514428213 -2.12384645859535 Max fold change at or above threshold 4 7.17665643080606 Max fold change at or above threshold PPAAAM No 4 0 PAAM 2 1 1 No No x = 1
1780168_at SPBC1105.03c.S1 --- 7.17140571487648 --- --- --- --- 13.6936855316162 20.4606475830078 6.82255935668945 6.34732389450073 0.017822265625 0.0676269978284836 0.111571997404099 0.366210997104645 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1105.03c /GEN=mrpl16 /DEF=mitochondrial ribosomal protein subunit YmL47 --- --- --- --- --- --- SPBC1105.03c // |mrpl16||mitochondrial ribosomal protein subunit L16|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.17140571487648 1.49416660224656 -2.32489951223461 -2.00711856294657 -2.15739511000538 Max fold change at or above threshold 4 7.17140571487648 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1772018_at SPCC1322.04.S1 --- 7.16918622220017 --- --- --- --- 4.73721265792847 6.43926954269409 0.660774111747742 0.941579341888428 0.466064006090164 0.633789002895355 0.805419981479645 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1322.04 /DEF=UTP-glucose-1-phosphate uridylyltransferase activity (predicted) --- --- --- --- --- --- D89160 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0650. // gb // 11 // --- /// SPCC1322.04 // |||UTP-glucose-1-phosphate uridylyltransferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.08980898144249 1.35929501326417 1.11983123721961 -7.16918622220017 -5.03113486796294 Max fold change at or above threshold 2 7.16918622220017 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774921_at SPBPB2B2.02.S1 --- 7.16878493116354 --- --- --- --- 4.1141471862793 3.39743995666504 0.792019367218018 0.573897421360016 0.219482004642487 0.274170011281967 0.533936023712158 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB2B2.02 /DEF=hypothetical protein --- --- --- --- --- --- SPBPB2B2.02 // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.20665712791495 -1.21095508346166 1.25785014636082 -5.19450326161886 -7.16878493116354 Max fold change at or above threshold 2 7.16878493116354 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770929_at SPAC9G1.08c.S1 --- 7.16771623866087 --- --- --- --- 4.67355442047119 12.6724987030029 10.6506843566895 2.17455625534058 0.303710997104645 0.601073980331421 0.432372987270355 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9G1.08c /DEF=lysophospholipase (predicted) --- --- --- --- --- --- SPAC9G1.08c // |||lysophospholipase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.16771623866087 2.71153335617418 -1.34532628282347 2.27892593055879 -2.14919913384316 Max fold change at or above threshold 3 7.16771623866087 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770588_at SPCC613.12c.S1 --- 7.165467370846 --- --- --- --- 4.81879997253418 1.21703624725342 3.12173795700073 0.672503232955933 0.366210997104645 0.696289002895355 0.334473013877869 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC613.12c /DEF=WD repeat protein --- --- --- --- --- --- SPCC613.12c // |||WD repeat protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.93188922433425 -3.95945476842547 -1.52328315994377 -1.54362731238465 -7.165467370846 Max fold change at or above threshold 2 7.165467370846 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771029_at SPBC342.01c.S1 --- 7.16504838635621 --- --- --- --- 1.66028416156769 11.2316827774048 2.35708284378052 0.231719881296158 0.665526986122131 0.171387001872063 0.398925989866257 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC342.01c /DEF=glycosyl transferase family ALG8 --- --- --- --- --- --- SPBC342.01c // ||SPBC3F6.06c|glycosyl transferase family ALG8|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.64456294404592 6.76491593270366 -1.89324934825334 1.41968639967925 -7.16504838635621 Max fold change at or above threshold 1 7.16504838635621 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774741_at SPAC2C4.10c.S1 --- 7.16375859429468 --- --- --- --- 0.698478817939758 5.00373363494873 0.553113162517548 3.10049653053284 0.870360970497131 0.366210997104645 0.725830018520355 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2C4.10c /DEF=sequence orphan --- --- --- --- --- --- SPAC2C4.10c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.38518851506304 7.16375859429468 2.00040431692371 -1.26281358910456 4.4389270667908 Max fold change at or above threshold 2 7.16375859429468 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775515_at SPAC17A5.07c.S1 --- 7.14721058207571 --- --- --- --- 0.807733476161957 0.987281978130341 0.797779738903046 0.51618230342865 0.870360970497131 0.780517995357513 0.533936023712158 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A5.07c /GEN=ulp2 /DEF=peptidase family C48 --- --- --- --- --- --- SPAC17A5.07c // |ulp2||peptidase family C48|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.51661566500405 1.22228681522713 7.14721058207571 -1.01247679876227 -1.56482210024778 Max fold change at or above threshold 0 7.14721058207571 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780065_at SPAC24H6.07.S1 --- 7.13951369138235 --- --- --- --- 4.1365385055542 8.14866733551025 2.53667259216309 2.67090582847595 0.274170011281967 0.303710997104645 0.366210997104645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24H6.07 /GEN=rps901 /DEF=40S ribosomal protein S9 --- --- --- --- --- --- AB011008 // Schizosaccharomyces pombe mRNA for ribosomal protein S9, partial cds. // gb // 11 // --- /// SPAC24H6.07 // |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.13951369138235 1.96992420705595 -1.39196321537494 -1.63069468181815 -1.54873992989657 Max fold change at or above threshold 4 7.13951369138235 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778342_at SPBC36B7.08c.S1 --- 7.13892497538304 --- --- --- --- 0.749145030975342 1.55243980884552 2.18546748161316 5.34809017181396 0.805908203125 0.828612983226776 0.5 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC36B7.08c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC36B7.08c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.15447609806809 2.07228206109081 -2.39259858481753 2.91728222340047 7.13892497538304 Max fold change at or above threshold 1 7.13892497538304 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770361_at SPBC19G7.06.S1 --- 7.13737145662323 --- --- --- --- 0.419618844985962 2.99497556686401 0.334481209516525 0.302251547574997 0.805419981479645 0.633789002895355 0.976073980331421 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19G7.06 /DEF=MAD box transcription factor --- --- --- --- --- --- SPBC19G7.06 // |mbx1||MADS-box transcription factor|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.4183349346509 7.13737145662323 5.4136285666721 -1.25453637767126 -1.38830999659925 Max fold change at or above threshold 1 7.13737145662323 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777622_at SPAC4G8.05.S1 --- 7.12363185208879 --- --- --- --- 1.37073683738709 9.76462459564209 1.72627937793732 4.93323040008545 0.633789002895355 0.0461426004767418 0.567627012729645 0.24609400331974 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G8.05 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPAC4G8.05 // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.15213978892185 7.12363185208879 5.57702198550881 1.25938059797676 3.59896244525626 Max fold change at or above threshold 2 7.12363185208879 Max fold change at or above threshold AAPPAA No 4 0 APAA 3 1 0 No No x = 1
1774191_at SPAC1687.09.S1 --- 7.12326456832743 --- --- --- --- 0.878177046775818 6.2554874420166 3.24462628364563 0.691606998443604 0.985840022563934 0.888427972793579 0.805419981479645 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.09 /DEF=conserved fungal protein --- --- --- --- --- --- SPAC1687.09 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.09208834154794 7.12326456832743 -1.20945831519492 3.69472909313459 -1.2697631006512 Max fold change at or above threshold 2 7.12326456832743 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772082_at SPBC29A3.03c.S1 --- 7.12177799769949 --- --- --- --- 7.17859697341919 8.02116680145264 4.97263431549072 1.05057084560394 0.194580003619194 0.274170011281967 0.303710997104645 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A3.03c /DEF=zinc finger protein --- --- --- --- --- --- SPBC29A3.03c // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.12177799769949 1.11737249369944 -1.9455838815917 -1.44362052746498 -6.83304415257442 Max fold change at or above threshold 3 7.12177799769949 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769820_at SPBC14F5.12c.S1 --- 7.1178375563919 --- --- --- --- 0.699675619602203 4.98017740249634 0.972696959972382 0.759632587432861 0.888427972793579 0.466064006090164 0.753906011581421 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14F5.12c /GEN=cbh2 /DEF=centromere binding protein --- --- --- --- --- --- SPBC14F5.12c // |cbh2||centromere binding protein Cbh2|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.06244905167214 7.1178375563919 2.90769442955294 1.39021131038609 1.08569252114965 Max fold change at or above threshold 1 7.1178375563919 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771324_at YCL059C.S1 Essential nucleolar protein required for the synthesis of 18S rRNA and for the assembly of 40S ribosomal subunit 7.1145360516638 47.6650066375732 94.5265693664551 KRR1 6364 // rRNA processing // inferred from mutant phenotype /// 6365 // 35S primary transcript processing // inferred from mutant phenotype /// 6365 // 35S primary transcript processing // inferred from physical interaction /// 7046 // ribosome biogenesis // inferred from mutant phenotype 5730 // nucleolus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction --- 82.3795852661133 51.3917617797852 43.9382514953613 106.673553466797 0.000244141003349796 0.0107421996071935 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL059C /GEN=KRR1 /DB_XREF=GI:6319791 /SEG=NC_001135:-22429,23379 /DEF=Involved in cell division and spore germination /NOTE=Krr1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11027267]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 11996121]; go_process: ribosome biogenesis [goid GO:0007046] [evidence IMP] [pmid 11027267] --- --- --- --- --- --- S0000564 // KRR1 SGDID:S0000564, Chr III from 23379-22429, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023347 // cdna:GeneFinder chromosome:SGD1:III:22429:23379:-1 // ensembl // 11 // --- /// YCL059C // cdna:known chromosome:SGD1:III:22429:23379:-1 gene:YCL059C // ensembl // 11 // --- --- No cerevisiae_gene 7.1145360516638 -1.60297258574461 1.07629414418332 -1.87489448174355 1.29490277381473 Max fold change at or above threshold 4 7.1145360516638 Max fold change at or above threshold 0.38941439170949 -0.680004364308272 -0.937231971786123 1.2278219443849 71.0957880020142 28.9763231773854 0.40756736779631 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1773776_at SPCC1183.08c.S1 --- 7.1083959316544 --- --- --- --- 1.55223798751831 10.0648851394653 11.0339221954346 5.32335090637207 0.303710997104645 0.0375977009534836 0.0676269978284836 0.0805663987994194 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1183.08c /GEN=rpl101 /DEF=60S ribosomal protein (L10a) --- --- --- --- --- --- SPCC1183.08c // |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.20322129070964 6.48411211450693 4.34079659531487 7.1083959316544 3.42946825755949 Max fold change at or above threshold 3 7.1083959316544 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1775337_at YHL015W-A.S1 Identified by expression profiling and mass spectrometry 7.10779455629216 2.12679144740105 0.516401022672653 --- --- --- --- 0.524770200252533 3.7299587726593 0.523624122142792 0.508031845092773 0.805419981479645 0.696289002895355 0.805419981479645 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL015W-A /GEN=DUR3 /DB_XREF=GI:33438803 /SEG=NC_001140:+74695,74778 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Yhl015w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028828 // YHL015W-A SGDID:S0028828, Chr VIII from 74695-74778, Uncharacterized ORF // sgd // 11 // --- /// YHL015W-A // cdna:known chromosome:SGD1:VIII:74695:74778:1 gene:YHL015W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.48918019915257 7.10779455629216 1.27692393490685 -1.00218874200266 -1.03294745264778 Max fold change at or above threshold 1 7.10779455629216 Max fold change at or above threshold -0.496281403101776 1.4999830416843 -0.496995206651782 -0.506706431930747 1.32159623503685 1.60559317718562 1.21488933958778 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779208_at SPAC1002.12c.S1 --- 7.10709433777576 --- --- --- --- 10.7327222824097 9.06356334686279 2.12946891784668 5.41842079162598 0.567627012729645 0.398925989866257 0.633789002895355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1002.12c /DEF=succinate-semialdehyde dehydrogenase (predicted) --- --- --- --- --- --- SPAC1002.12c // |||succinate-semialdehyde dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.10709433777576 -1.18416144640558 -4.9592114844596 -5.04009342069318 -1.98078419804471 Max fold change at or above threshold 3 7.10709433777576 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774336_at SPBC947.04.S1 --- 7.10481484682834 --- --- --- --- 0.715781092643738 4.03387308120728 5.08549213409424 4.65722227096558 0.753906011581421 0.633789002895355 0.303710997104645 0.457763671875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC947.04 /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPBC947.04 // |||glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.80757783408087 5.63562396752918 6.072063402764 7.10481484682834 6.50648965001873 Max fold change at or above threshold 3 7.10481484682834 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770827_at SPBC8E4.05c.S1 --- 7.09612459718617 --- --- --- --- 3.05246949195862 5.48522996902466 1.02494096755981 0.490587264299393 0.5 0.303710997104645 0.780517995357513 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8E4.05c /DEF=adenylosuccinate lyase (predicted) --- --- --- --- --- --- SPBC8E4.05c // |||adenylosuccinate lyase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.09612459718617 1.79698109464316 -1.18055658010533 -2.97819053835457 -6.22207243051417 Max fold change at or above threshold 2 7.09612459718617 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769382_at SPBC16A3.11.S1 --- 7.09501982759406 --- --- --- --- 4.22552871704102 0.595562636852264 4.58338975906372 2.16013646125793 0.432372987270355 0.5 0.194580003619194 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16A3.11 /GEN=eso1 /DEF=involved in sister chromatid cohesion (required) (S phase) --- --- --- --- --- --- AB039861 // Schizosaccharomyces pombe eso1+ mRNA, complete cds. // gb // 11 // --- /// SPBC16A3.11 // |eso1||sister chromatid cohesion protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- D89249 // gb // 1 // Negative Strand Matching Probes No No 1.52218070465118 -7.09501982759406 1.19827398647825 1.08469024020107 -1.95613971284959 Max fold change at or above threshold 2 7.09501982759406 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775260_at SPBP8B7.19.S1 --- 7.08907608587121 --- --- --- --- 1.34910750389099 9.56392574310303 6.17145776748657 1.1761908531189 0.7744140625 0.24609400331974 0.601073980331421 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.19 /DEF=FACT complex component --- --- --- --- --- --- SPBP8B7.19 // |||FACT complex component|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.7198836737287 7.08907608587121 1.91756428791954 4.57447442082068 -1.14701410941394 Max fold change at or above threshold 2 7.08907608587121 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780231_at SPAC3G6.06c.S1 --- 7.08837027943187 --- --- --- --- 2.455322265625 5.08353042602539 1.53856384754181 0.459073305130005 0.334473013877869 0.366210997104645 0.366210997104645 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G6.06c /GEN=rad2 /DEF=FEN-1 endonuclease --- --- --- --- --- --- SPAC3G6.06c // |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.08837027943187 2.0704127100527 1.42034232996918 -1.59585334696894 -5.34843180421845 Max fold change at or above threshold 1 7.08837027943187 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770465_at SPBC1706.03.S1 --- 7.08761760184778 --- --- --- --- 1.02274084091187 0.682041466236115 7.24879598617554 2.9623281955719 0.533936023712158 0.5927734375 0.194580003619194 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1706.03 /DEF=GTPase activity (ISS) --- --- --- --- --- --- SPBC1706.03 // |fzo1|SPBC839.01|mitochondrial fusion GTPase protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.30288697121421 -1.49952882858563 2.72750895986326 7.08761760184778 2.89646025373419 Max fold change at or above threshold 2 7.08761760184778 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776816_at SPAC17C9.16c.S1 --- 7.08384666236509 --- --- --- --- 5.59822940826416 0.790280997753143 3.17966270446777 6.4066333770752 0.423828125 0.888427972793579 0.601073980331421 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17C9.16c /DEF=membrane transporter --- --- --- --- --- --- SPAC17C9.16c // ||SPAC9E9.16|membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.61418625776025 -7.08384666236509 1.32322936528744 -1.76063624622764 1.14440350865537 Max fold change at or above threshold 3 7.08384666236509 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775884_at YLR084C.S1 N-glycosylated protein involved in the maintenance of bud site selection during bipolar budding; localization requires Rax1p 7.06961863153357 39.6668491363525 267.087249755859 RAX2 282 // bud site selection // inferred from genetic interaction /// 282 // bud site selection // inferred from mutant phenotype 5621 // bud scar // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 16020 // membrane // inferred from sequence similarity --- 241.141540527344 45.2241439819336 34.1095542907715 293.032958984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR084C /GEN=RAX2 /DB_XREF=GI:6323113 /SEG=NC_001144:-296590,300252 /DEF=Involved in the maintenance of bipolar pattern /NOTE=Rax2p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 11110666]; go_component: bud scar [goid GO:0005621] [evidence IDA] [pmid 11110666]; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 11110666]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: bud site selection [goid GO:0000282] [evidence IGI,IMP] [pmid 11110666] --- --- --- --- --- S0004074 // span:1166-1188 // numtm:1 S0004074 // RAX2 SGDID:S0004074, Chr XII from 300252-296590, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017883 // cdna:Genscan chromosome:SGD1:XII:296590:300252:-1 // ensembl // 11 // --- /// GENEFINDER00000024789 // cdna:GeneFinder chromosome:SGD1:XII:296590:299835:-1 // ensembl // 10 // --- /// YLR084C // cdna:known chromosome:SGD1:XII:296590:300252:-1 gene:YLR084C // ensembl // 11 // --- --- No cerevisiae_gene -2.1712877629664 -5.33214162381219 -1.75199556376325 -7.06961863153357 1.21519070643553 Max fold change at or above threshold 4 7.06961863153357 Max fold change at or above threshold 0.659503427351629 -0.812711507272748 -0.896231731735094 1.04943981165621 153.377049446106 133.076626202951 0.867643670832981 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779986_at SPCC1494.10.S1 --- 7.06177870044699 --- --- --- --- 4.11789798736572 5.90700769424438 1.14775955677032 0.583124756813049 0.665526986122131 0.466064006090164 0.805419981479645 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1494.10 /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPCC1494.10 // ||SPCC70.01|transcriptional regulator |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -3.17841951631727 1.43447159506328 -2.57110815586275 -3.58777059452509 -7.06177870044699 Max fold change at or above threshold 2 7.06177870044699 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779987_at SPAC1F7.07c.S1 --- 7.06157210599656 --- --- --- --- 2.44960999488831 17.2980976104736 14.1614809036255 7.52587366104126 0.466064006090164 0.0805663987994194 0.24609400331974 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F7.07c /GEN=fip1 /DEF=iron permease --- --- --- --- --- --- SPAC1F7.07c // |fip1||iron permease|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.24422163844169 7.06157210599656 4.07383548776382 5.78111655862639 3.0722742300798 Max fold change at or above threshold 3 7.06157210599656 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773452_at SPBC26H8.06.S1 --- 7.05848517200427 --- --- --- --- 1.19207715988159 1.90963280200958 1.47195470333099 4.37306976318359 0.432372987270355 0.5 0.466064006090164 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC26H8.06 /GEN=grx5 /DEF=arsenate reductase (glutaredoxin) activity (predicted) --- --- --- --- --- --- SPBC26H8.06 // |grx5||glutaredoxin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 7.05848517200427 1.60193724557164 2.64075885801693 1.23478139911447 3.66844522347695 Max fold change at or above threshold 1 7.05848517200427 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775502_at SPBP8B7.04.S1 --- 7.05474152329626 --- --- --- --- 1.61030685901642 5.43044996261597 1.07012617588043 2.90896940231323 0.303710997104645 0.567627012729645 0.533936023712158 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.04 /DEF=sequence orphan --- --- --- --- --- --- SPBP8B7.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.05474152329626 3.37230754014977 -1.35795814790491 -1.50478223532058 1.80646898820889 Max fold change at or above threshold 2 7.05474152329626 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775384_at YJL060W.S1 Arylformamidase, involved in biosynthesis of nicotinic acid from tryptophan via kynurenine pathway; potential Cdc28p substrate 7.05156936812585 429.635375976563 2547.64819335938 BNA3 9435 // NAD biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4061 // arylformamidase activity // traceable author statement 2579.61010742188 365.820709228516 493.450042724609 2515.68627929688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL060W /GEN=BNA3 /DB_XREF=GI:6322401 /SEG=NC_001142:+323302,324636 /DEF=Arylformamidase, involved in biosynthesis of nicotinic acid from tryptophan via kynurenine pathway; potential Cdc28p substrate /NOTE=Bna3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: arylformamidase activity [goid GO:0004061] [evidence TAS] [pmid 12062417]; go_process: NAD biosynthesis [goid GO:0009435] [evidence IMP] [pmid 12062417] --- --- --- ec // 1A11_CUCMA // (P23599) 1-aminocyclopropane-1-carboxylate synthase CMW33 (EC 4.4.1.14) (ACC synthase) (S-adenosyl-L-methionine methylthioadenosine-lyase) // 1.0E-111 --- --- S0003596 // BNA3 SGDID:S0003596, Chr X from 323302-324636, Verified ORF // sgd // 11 // --- /// GENSCAN00000024094 // cdna:Genscan chromosome:SGD1:X:323302:324636:1 // ensembl // 11 // --- /// GENEFINDER00000024430 // cdna:GeneFinder chromosome:SGD1:X:323338:324636:1 // ensembl // 11 // --- /// YJL060W // cdna:known chromosome:SGD1:X:323302:324636:1 gene:YJL060W // ensembl // 11 // --- --- No cerevisiae_gene -1.75463893763309 -7.05156936812585 -1.19137725217975 -5.22770267315902 -1.02541009530921 Max fold change at or above threshold 4 7.05156936812585 Max fold change at or above threshold 0.891151612366514 -0.917170362244039 -0.812917026965519 0.838935776843044 1488.64178466797 1224.22302514469 0.822375831280155 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Sp-ACT1-5_at AFFX-r2-Sp-ACT1-5 --- 7.0505825945162 --- --- --- --- 5.16831350326538 8.62548732757568 18.6982345581055 3.66403341293335 0.533936023712158 0.466064006090164 0.274170011281967 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=ACT1 actin (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPBC32H8.12c // |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- AFFX_control No -2.72595529567104 1.66891720522101 -7.0505825945162 3.61785997430144 -1.41055304927684 Max fold change at or above threshold 4 7.0505825945162 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770450_at YFR032C.S1 Hypothetical protein 7.04692004164129 34.2183332443237 151.316997528076 --- --- --- --- 176.430999755859 43.4000549316406 25.0366115570068 126.202995300293 0.000244141003349796 0.00415039015933871 0.00585938012227416 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR032C /GEN=RPL2A /DB_XREF=GI:14318556 /SEG=NC_001138:-222078,222947 /DEF=Hypothetical ORF /NOTE=Yfr032cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001928 // YFR032C SGDID:S0001928, Chr VI from 222947-222078, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018583 // cdna:GeneFinder chromosome:SGD1:VI:222078:222947:-1 // ensembl // 11 // --- /// GENSCAN00000023273 // cdna:Genscan chromosome:SGD1:VI:222078:222947:-1 // ensembl // 11 // --- /// YFR032C // cdna:known chromosome:SGD1:VI:222078:222947:-1 gene:YFR032C // ensembl // 11 // --- --- No cerevisiae_gene 1.46658817208821 -4.06522526374116 -2.68982110286652 -7.04692004164129 -1.39799375867468 Max fold change at or above threshold 4 7.04692004164129 Max fold change at or above threshold 1.17761218574069 -0.694879066083115 -0.95335567179165 0.47062255213408 92.7676653862 71.04489524031 0.76583683489871 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1770494_at SPAC1F7.02c.S1 --- 7.04589109755954 --- --- --- --- 10.2197904586792 17.8823223114014 8.08491230010986 3.19550633430481 0.303710997104645 0.111571997404099 0.24609400331974 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F7.02c /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPAC1F7.02c // |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.04589109755954 1.74977387097156 -2.48547174430335 -1.26405705829862 -3.19817562211234 Max fold change at or above threshold 4 7.04589109755954 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774096_at SPBC1198.03c.S1 --- 7.04143818532015 --- --- --- --- 2.54076933860779 1.03000569343567 1.66875350475311 0.428857117891312 0.633789002895355 0.919434010982513 0.850341975688934 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1198.03c /DEF=hypothetical protein --- --- --- --- --- --- SPBC1198.03c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -7.04143818532015 -2.46675271292224 -5.3312533787745 -1.5225552074473 -5.92451246023556 Max fold change at or above threshold 1 7.04143818532015 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772302_at SPAC6B12.09.S1 --- 7.03900780102106 --- --- --- --- 0.442216217517853 2.37712526321411 3.11276340484619 1.24234139919281 0.665526986122131 0.4912109375 0.432372987270355 0.625732421875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6B12.09 /DEF=tRNA m(1)G methyltransferase --- --- --- --- --- --- SPAC6B12.09 // |||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.60993169439601 5.37548187752328 3.22232054126904 7.03900780102106 2.80935286852671 Max fold change at or above threshold 1 7.03900780102106 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774206_at SPAC589.04.S1 --- 7.03492272333943 --- --- --- --- 0.896626651287079 0.662478864192963 6.30769920349121 1.294557929039 0.805419981479645 0.932372987270355 0.303710997104645 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC589.04 /DEF=metaxin1 --- --- --- --- --- --- SPAC589.04 // |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.01413683625743 -1.35344189792282 3.45466256205004 7.03492272333943 1.4438093348895 Max fold change at or above threshold 1 7.03492272333943 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774236_at YMR006C.S1 Phospholipase B (lysophospholipase) involved in phospholipid metabolism; displays transacylase activity in vitro; overproduction confers resistance to lysophosphatidylcholine 7.03461481886717 488.642608642578 334.869155883789 PLB2 6650 // glycerophospholipid metabolism // inferred from direct assay /// 6650 // glycerophospholipid metabolism // inferred from genetic interaction /// 6650 // glycerophospholipid metabolism // inferred from mutant phenotype 5576 // extracellular region // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay 4622 // lysophospholipase activity // inferred from direct assay /// 4622 // lysophospholipase activity // inferred from sequence similarity /// 4622 // lysophospholipase activity // inferred from mutant phenotype 334.647735595703 419.845825195313 557.439392089844 335.090576171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR006C /GEN=PLB2 /DB_XREF=GI:6323648 /SEG=NC_001145:-277561,279681 /DEF=Phospholipase B 2 /NOTE=Plb2p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_component: extracellular [goid GO:0005576] [evidence IDA] [pmid 10497163]; go_function: lysophospholipase activity [goid GO:0004622] [evidence IDA,IMP,ISS] [pmid 10497163]; go_process: glycerophospholipid metabolism [goid GO:0006650] [evidence IDA,IGI,IMP] [pmid 10497163] --- --- --- --- --- --- S0004608 // PLB2 SGDID:S0004608, Chr XIII from 279681-277561, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018722 // cdna:Genscan chromosome:SGD1:XIII:277561:279681:-1 // ensembl // 11 // --- /// GENEFINDER00000021934 // cdna:GeneFinder chromosome:SGD1:XIII:277561:279681:-1 // ensembl // 11 // --- /// YMR006C // cdna:known chromosome:SGD1:XIII:277561:279681:-1 gene:YMR006C // ensembl // 11 // --- --- No cerevisiae_gene 7.03461481886717 1.25459036633835 -1.34646104995415 1.66574978042971 1.00132330366851 Max fold change at or above threshold 4 7.03461481886717 Max fold change at or above threshold -0.733948816297569 0.0770035890572769 1.38667889467569 -0.729733667435394 411.755882263184 105.059296990838 0.255149474522108 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770957_at YOR378W.S1 Hypothetical protein 7.03418611014387 278.97248840332 60.5203304290771 --- --- --- --- 47.9732398986816 220.492279052734 337.452697753906 73.0674209594727 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR378W /GEN=ATF1 /DB_XREF=GI:6324954 /SEG=NC_001147:+1049507,1051054 /DEF=Hypothetical ORF /NOTE=Yor378wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005905 // span:82-101,116-138,172-191,201-223,244-261,266-288,309-331,346-368,375-397,401-423,436-458,478-500 // numtm:12 S0005905 // YOR378W SGDID:S0005905, Chr XV from 1049507-1051054, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022580 // cdna:GeneFinder chromosome:SGD1:XV:1049507:1051054:1 // ensembl // 11 // --- /// GENSCAN00000017825 // cdna:Genscan chromosome:SGD1:XV:1050020:1051054:1 // ensembl // 11 // --- /// YOR378W // cdna:known chromosome:SGD1:XV:1049507:1051054:1 gene:YOR378W // ensembl // 11 // --- YOR379C // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene 1.07947186590348 4.59615151110096 1.762545288022 7.03418611014387 1.52308706090707 Max fold change at or above threshold 4 7.03418611014387 Max fold change at or above threshold -0.900369387551599 0.37520603057678 1.2399907854698 -0.714827428494985 169.746409416199 135.248011761771 0.796765081670495 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779667_at SPBC21C3.17c.S1 --- 7.02794415113288 --- --- --- --- 11.9396409988403 1.71225762367249 2.07969188690186 5.69808483123779 0.111571997404099 0.466064006090164 0.533936023712158 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21C3.17c /DEF=conserved fungal protein --- --- --- --- --- --- SPBC21C3.17c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.94766695818739 -6.97304005762401 -7.02794415113288 -5.74106244970113 -2.09537789493504 Max fold change at or above threshold 2 7.02794415113288 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774636_s_at SPBC1711.01c.S1 --- 7.02475309371948 --- --- --- --- 0.0393477417528629 0.0343711674213409 0.0339105613529682 0.151738867163658 0.84521484375 0.943848013877869 0.989257991313934 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1711.01c /GEN=matmi /DEF=mating-type m-specific polypeptide mi --- --- --- --- --- --- SPBC1711.01c // |matmi||mating-type m-specific polypeptide mi|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPBC23G7.17c // |matmi|mat1|mating-type M-specific polypeptide Mi|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 7.02475309371948 1 1 1 1.51738867163658 Max fold change at or above threshold 0 7.02475309371948 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770649_at SPAC1783.03.S1 --- 7.02343032674371 --- --- --- --- 1.17300713062286 5.91803073883057 1.3817093372345 0.479242712259293 0.533936023712158 0.366210997104645 0.466064006090164 0.79931640625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1783.03 /DEF=sequence orphan --- --- --- --- --- --- SPAC1783.03 // |fta2|sma2|kinetochore associated protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -7.02343032674371 5.04517882656699 -2.24625899226379 1.17792066319393 -2.44762643357258 Max fold change at or above threshold 1 7.02343032674371 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772869_at SPAC31A2.08.S1 --- 7.02320303003544 --- --- --- --- 4.78315830230713 6.03238153457642 4.98499059677124 3.29367995262146 0.5 0.219482004642487 0.24609400331974 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31A2.08 /GEN=mrp20 /DEF=mitochondrial ribosomal protein subunit yml41 --- --- --- --- --- --- SPAC31A2.08 // |mrp20||mitochondrial ribosomal protein subunit L23|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.21676044491938 1.26117120808373 -7.02320303003544 1.04219644881223 -1.45222315802122 Max fold change at or above threshold 4 7.02320303003544 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775301_at SPBP4H10.20.S1 --- 7.02311664228712 --- --- --- --- 8.3162727355957 9.19219970703125 7.43330049514771 1.18412852287292 0.149657994508743 0.219482004642487 0.149657994508743 0.456298828125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP4H10.20 /GEN=nhm1 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBP4H10.20 // |nhm1|DcpS|conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.81080371686135 1.10532686929402 -2.76719270681073 -1.1187860279595 -7.02311664228712 Max fold change at or above threshold 3 7.02311664228712 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770754_at YMR318C.S1 NADPH-dependent cinnamyl alcohol dehydrogenase family member with broad substrate specificity; may be involved in fusel alcohol synthesis or in aldehyde tolerance 7.01870931517518 357.488739013672 2180.10607910156 ADH6 6066 // alcohol metabolism // inferred from direct assay /// 6081 // aldehyde metabolism // inferred from direct assay 5625 // soluble fraction // inferred from direct assay 8106 // alcohol dehydrogenase (NADP+) activity // inferred from direct assay 2130.95922851563 303.611267089844 411.3662109375 2229.2529296875 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR318C /GEN=ADH6 /DB_XREF=GI:6323980 /SEG=NC_001145:-911059,912141 /DEF=NADPH-dependent alcohol dehydrogenase /NOTE=Adh6p; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 11742541]; go_function: alcohol dehydrogenase (NADP+) activity [goid GO:0008106] [evidence IDA] [pmid 11742541]; go_process: alcohol metabolism [goid GO:0006066] [evidence IDA] [pmid 11742541]; go_process: aldehyde metabolism [goid GO:0006081] [evidence IDA] [pmid 11742541] --- --- --- --- --- --- S0004937 // ADH6 SGDID:S0004937, Chr XIII from 912141-911059, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018985 // cdna:Genscan chromosome:SGD1:XIII:911059:912141:-1 // ensembl // 11 // --- /// GENEFINDER00000021806 // cdna:GeneFinder chromosome:SGD1:XIII:911059:912141:-1 // ensembl // 11 // --- /// YMR318C // cdna:known chromosome:SGD1:XIII:911059:912141:-1 gene:YMR318C // ensembl // 11 // --- --- No cerevisiae_gene -1.0035485875612 -7.01870931517518 1.43927375538887 -5.1801999577437 1.04612650484183 Max fold change at or above threshold 4 7.01870931517518 Max fold change at or above threshold 0.818012142133394 -0.915760783799101 -0.81352376697354 0.911272408639247 1268.79740905762 1053.97190952383 0.830685735957366 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777435_at SPAC25B8.11.S1 --- 7.0182179089995 --- --- --- --- 3.22727656364441 7.40725564956665 5.16667175292969 0.45984274148941 0.398925989866257 0.111571997404099 0.334473013877869 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25B8.11 /DEF=involved in transcriptional regulation (predicted) --- --- --- --- --- --- SPAC25B8.11 // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -3.89336027048947 2.29520324753389 -3.92331009840463 1.6009386400697 -7.0182179089995 Max fold change at or above threshold 3 7.0182179089995 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772024_at SPBC3E7.06c.S1 --- 7.01747234220143 --- --- --- --- 1.41279208660126 1.27558624744415 9.91422939300537 6.84472131729126 0.780517995357513 0.888427972793579 0.24609400331974 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3E7.06c /DEF=transporter --- --- --- --- --- --- SPBC3E7.06c // |||membrane transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.28913409846078 -1.10756296521072 6.76505639564205 7.01747234220143 4.84481855625165 Max fold change at or above threshold 2 7.01747234220143 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779876_at SPBC3D6.15.S1 --- 7.01401516576375 --- --- --- --- 15.9597129821777 17.0276432037354 11.7166328430176 9.12034225463867 0.129638999700546 0.0952147990465164 0.171387001872063 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3D6.15 /GEN=rps2501 /DEF=40S ribosomal protein S25 --- --- --- --- --- --- AB016006 // Schizosaccharomyces pombe mRNA for ribosomal protein S31 homolog, complete cds. // gb // 10 // --- /// SPBC3D6.15 // |rps2501|rps25-1|40S ribosomal protein S25|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -7.01401516576375 1.06691412450526 -1.74786939221252 -1.36214159784727 -1.74990285853149 Max fold change at or above threshold 4 7.01401516576375 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772357_at SPAC4D7.13.S1 --- 7.00674493419219 --- --- --- --- 1.03993225097656 7.28654003143311 7.05327367782593 3.92176938056946 0.601073980331421 0.219482004642487 0.303710997104645 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4D7.13 /GEN=prp40 /DEF=involved in mRNA splicing --- --- --- --- --- --- SPAC4D7.13 // |prp40||snRNP U1 subunit Prp40|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.17844065008143 7.00674493419219 4.92485748976567 6.7824357511775 3.77117776363476 Max fold change at or above threshold 3 7.00674493419219 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778178_at SPCC338.06c.S1 --- 7.00612840615592 --- --- --- --- 6.50327301025391 0.928226351737976 4.8505392074585 4.17617511749268 0.030273400247097 0.533936023712158 0.00585938012227416 0.111571997404099 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC338.06c /DEF=heat shock protein --- --- --- --- --- --- SPCC338.06c // |||heat shock protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.55810859318467 -7.00612840615592 -2.96796678522196 -1.34073197475738 -1.55723187541005 Max fold change at or above threshold 3 7.00612840615592 Max fold change at or above threshold PAAAPA No 4 0 PAPA 2 2 0 No No 1 < x = 2
1774751_at SPAC1B3.06c.S1 --- 7.00567297798512 --- --- --- --- 10.4036073684692 1.48502612113953 3.21369600296021 2.37822508811951 0.274170011281967 0.725830018520355 0.366210997104645 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B3.06c /DEF=methyltransferase (predicted) --- --- --- --- --- --- SPAC1B3.06c // |||methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.24177998796922 -7.00567297798512 1.0496652617987 -3.23727177644875 -4.37452595233343 Max fold change at or above threshold 2 7.00567297798512 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778318_at SPAC14C4.14.S1 --- 7.00318695044303 --- --- --- --- 1.26669788360596 8.87092208862305 5.21575117111206 1.97814548015594 0.962401986122131 0.665526986122131 0.725830018520355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC14C4.14 /GEN=atp1 /DEF=F1-ATPase alpha subunit (PMID 1824697) --- --- --- --- --- --- SPAC14C4.14 // |atp1||F1-ATPase alpha subunit|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.62039509000331 7.00318695044303 -1.54528044316773 4.11759681500705 1.56165531320277 Max fold change at or above threshold 2 7.00318695044303 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771541_at SPAC23C11.03.S1 --- 7.0005267338584 --- --- --- --- 0.760880708694458 0.958188772201538 5.32656574249268 3.19328951835632 0.780517995357513 0.888427972793579 0.665526986122131 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C11.03 /DEF=U3 snoRNP component (predicted) --- --- --- --- --- --- SPAC23C11.03 // |||U3 snoRNP component |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.76181118524595 1.2593153713223 1.00351479695992 7.0005267338584 4.19683332993876 Max fold change at or above threshold 2 7.0005267338584 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775826_s_at SPBC1348.09.S1 --- 6.99875832141879 --- --- --- --- 4.20558929443359 0.792497932910919 2.0235698223114 0.600905060768127 0.665526986122131 0.725830018520355 0.398925989866257 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1348.09 /DEF=short chain dehydrogenase (predicted) --- --- --- --- --- --- SPBC1348.09 // ||SPAC1348.09|short chain dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPAC977.08 // |||short chain dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.05489504833758 -5.30675112171721 -4.49116817915666 -2.07830204229365 -6.99875832141879 Max fold change at or above threshold 1 6.99875832141879 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775155_at SPCC1682.04.S1 --- 6.99514832017306 --- --- --- --- 0.564352691173553 3.90694832801819 2.42828297615051 0.248335212469101 0.823486328125 0.325439453125 0.432372987270355 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1682.04 /GEN=cdc31 /DEF=EF hand --- --- --- --- --- --- SPCC1682.04 // |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.2418118331475 6.92288419834379 6.99514832017306 4.30277557656538 -2.27254397619416 Max fold change at or above threshold 1 6.99514832017306 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772450_at SPBC215.06c.S1 --- 6.99488040080853 --- --- --- --- 1.52641749382019 10.6771078109741 7.3100528717041 3.95254707336426 0.366210997104645 0.0375977009534836 0.0805663987994194 0.390625 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC215.06c /DEF=transcription factor (predicted) --- --- --- --- --- --- SPBC215.06c // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -2.24540647595746 6.99488040080853 1.80620262316785 4.7890258735237 2.58942726309573 Max fold change at or above threshold 3 6.99488040080853 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1775586_at SPAC13A11.04c.S1 --- 6.99238552406165 --- --- --- --- 0.189575776457787 0.276359349489212 1.09934031963348 1.32558691501617 0.888427972793579 0.976073980331421 0.932372987270355 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13A11.04c /GEN=ubp8 /DEF=ubiquitin C-terminal hydrolase activity --- --- --- --- --- --- SPAC13A11.04c // |ubp8||ubiquitin C-terminal hydrolase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.12843148775587 1.45777775332362 1.45220466719042 5.79894931818084 6.99238552406165 Max fold change at or above threshold 0 6.99238552406165 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774986_at SPAC18G6.13.S1 --- 6.9917124703536 --- --- --- --- 1.54066038131714 10.7718544006348 9.53997135162354 8.43509387969971 0.59228515625 0.219482004642487 0.0952147990465164 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18G6.13 /DEF=dubious --- --- --- --- --- --- SPAC18G6.13 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.37212376110299 6.9917124703536 1.61426698058402 6.19213128818672 5.47498590993064 Max fold change at or above threshold 3 6.9917124703536 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775967_at SPBCPT2R1.08c.S1 --- 6.98992490768433 --- --- --- --- 0.698992490768433 0.224947929382324 4.03326606750488 0.0795416682958603 0.780517995357513 0.94140625 0.334473013877869 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBCPT2R1.08c /DEF=helicase --- --- --- --- --- --- SPBCPT2R1.08c // |||RecQ type DNA helicase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.8119969153023 -3.10735241123476 2.93031724337409 5.77011358601426 -6.98992490768433 Max fold change at or above threshold 1 6.98992490768433 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776855_at SPBC28F2.04c.S1 --- 6.98500429949802 --- --- --- --- 11.4816379547119 7.23156404495239 4.52674531936646 1.64375531673431 0.129638999700546 0.171387001872063 0.26708984375 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC28F2.04c /GEN=cwf7 /DEF=localization spliceosome complex (PMID 11884590) --- --- --- --- --- --- SPBC28F2.04c // |cwf7|spf27|40S snRNP-containing complex|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.8415539534657 -1.58771157710012 -1.30452585805236 -2.53640024889203 -6.98500429949802 Max fold change at or above threshold 3 6.98500429949802 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775123_at SPAC2F3.09.S1 --- 6.98398809358882 --- --- --- --- 1.20466709136963 6.62687253952026 7.90056371688843 4.74432468414307 0.49169921875 0.219482004642487 0.171387001872063 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F3.09 /DEF=5-aminolevulinate synthase activity (predicted) --- --- --- --- --- --- SPAC2F3.09 // |hem1||5-aminolevulinate synthase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.86956502808377 5.50099906189513 6.98398809358882 6.55829629072543 3.93828694925921 Max fold change at or above threshold 3 6.98398809358882 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772232_at YLR179C.S1 Protein of unknown function, transcription is activated by paralogous transcription factors Yrm1p and Yrr1p along with genes involved in multidrug resistance 6.98307248107451 845.58642578125 472.364639282227 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 411.146270751953 571.809448242188 1119.36340332031 533.5830078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR179C /GEN=TFS1 /DB_XREF=GI:6323208 /SEG=NC_001144:-514110,514715 /DEF=Protein of unknown function, transcription is activated by paralogous transcription factors Yrm1p and Yrr1p along with genes involved in multidrug resistance /NOTE=Ylr179cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004169 // YLR179C SGDID:S0004169, Chr XII from 514715-514110, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000024777 // cdna:GeneFinder chromosome:SGD1:XII:513164:514715:-1 // ensembl // 11 // --- /// GENSCAN00000017959 // cdna:Genscan chromosome:SGD1:XII:514110:514715:-1 // ensembl // 11 // --- /// YLR179C // cdna:known chromosome:SGD1:XII:514110:514715:-1 gene:YLR179C // ensembl // 11 // --- --- No cerevisiae_gene 6.98307248107451 1.39076890371982 1.17339834704045 2.72254300464185 1.29779362180914 Max fold change at or above threshold 4 6.98307248107451 Max fold change at or above threshold -0.78805446388053 -0.277173168858505 1.46395431308581 -0.398726680346774 658.975532531738 314.482403360076 0.477229256375963 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771918_at SPCC1020.01c.S1 --- 6.97868612272674 --- --- --- --- 5.94614171981812 1.44758808612823 5.47830247879028 0.852043151855469 0.0461426004767418 0.432372987270355 0.0805663987994194 0.274170011281967 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1020.01c /GEN=pma2 /DEF=P-type proton ATPase (PMID 12707717) --- --- --- --- --- --- SPCC1020.01c // |pma2|SPCC1393.01|P-type proton ATPase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.12566340542264 -4.10761996233463 -1.14205932131985 -1.08539857790604 -6.97868612272674 Max fold change at or above threshold 2 6.97868612272674 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1775779_at SPBC1703.02.S1 --- 6.9768687549655 --- --- --- --- 7.0505805015564 4.0791277885437 8.54965782165527 6.38161706924438 0.129638999700546 0.398925989866257 0.194580003619194 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1703.02 /DEF=chromatin remodeling complex (predicted) --- --- --- --- --- --- SPBC1703.02 // |||ARID domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.9768687549655 -1.72845296030148 1.02391002816895 1.21261757379665 -1.10482663328955 Max fold change at or above threshold 4 6.9768687549655 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777850_at YNL097C-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 6.97131536336197 13.4715123176575 14.7924337387085 --- --- --- --- 14.6088066101074 11.9621915817261 14.9808330535889 14.9760608673096 0.030273400247097 0.00585938012227416 0.0461426004767418 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL097C-A /GEN=RAS2 /DB_XREF=GI:33438867 /SEG=NC_001146:-440797,440919 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ynl097c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028699 // YNL097C-A SGDID:S0028699, Chr XIV from 440919-440797, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YNL097C-A // cdna:known chromosome:SGD1:XIV:440797:440919:-1 gene:YNL097C-A // ensembl // 11 // --- --- No cerevisiae_gene 6.97131536336197 -1.22124833984639 -1.44379064077922 1.0254659024115 1.02513923737946 Max fold change at or above threshold 4 6.97131536336197 Max fold change at or above threshold 0.327275381134676 -1.48923246345653 0.582616239450863 0.579340842870993 14.131973028183 1.45697968564344 0.103098108292298 PPPPPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
RPTR-Sc-AF292559-4_s_at AFFX-Sc-AF292559-4 --- 6.96690687497598 --- --- --- --- 1.01417028903961 6.73144149780273 7.06562995910645 6.15790843963623 0.870360970497131 0.601073980331421 0.533936023712158 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL AF292559 /FEA=CDS_4 /DB_XREF=AAG34047.1 GI:11321080 /PROD=kanamycin resistance protein /GEN=aphA --- --- --- --- --- --- AFFX-Sc-AF292559-4 // --- // affx // --- // --- --- No No -1.47481398354531 6.63738779428966 -1.6836447251659 6.96690687497598 6.07186831066367 Max fold change at or above threshold 3 6.96690687497598 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778041_at SPBPB2B2.18.S1 --- 6.96618503003118 --- --- --- --- 3.39654302597046 2.60945701599121 1.1735497713089 0.51298201084137 0.567627012729645 0.665526986122131 0.633789002895355 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB2B2.18 /DEF=dubious --- --- --- --- --- --- SPBPB2B2.18 // |||dubious|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.21734308954374 -1.30162827176529 -6.96618503003118 -2.89424710311364 -6.6211737530515 Max fold change at or above threshold 2 6.96618503003118 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774537_at SPCC777.12c.S1 --- 6.96526066741174 --- --- --- --- 1.74065721035004 12.1241312026978 11.1292839050293 0.643481850624084 0.398925989866257 0.219482004642487 0.0375977009534836 0.533936023712158 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC777.12c /DEF=sequence orphan --- --- --- --- --- --- SPCC777.12c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.67142399498855 6.96526066741174 3.70735608636013 6.39372521990775 -2.70506030381719 Max fold change at or above threshold 2 6.96526066741174 Max fold change at or above threshold AAAPPA No 4 0 AAPA 3 1 0 No No x = 1
1778876_at SPAC959.02.S1 --- 6.95749071747241 --- --- --- --- 0.98921263217926 6.88243770599365 0.956292152404785 4.95465850830078 0.919434010982513 0.567627012729645 0.92919921875 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC959.02 /GEN=sec17 /DEF=alpha SNAP --- --- --- --- --- --- SPAC959.02 // |sec17||alpha SNAP |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 3.05574071804483 6.95749071747241 -3.01199390422844 -1.03442512802358 5.00868907970326 Max fold change at or above threshold 2 6.95749071747241 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772956_at SPMIT.01.S1 --- 6.95023035758242 --- --- --- --- 3.41976261138916 4.36040019989014 3.15640377998352 3.62631464004517 0.0676269978284836 0.24609400331974 0.24609400331974 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPMIT.01 /GEN=cox1 /DEF=cytochrome c oxidase (subunit 1) --- --- --- --- --- --- SPMIT.01 // |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe|chr mitochondrial|||Manual // sanger // 11 // --- --- No No -6.95023035758242 1.27505932293905 -1.06968301833041 -1.08343635661437 1.06039952246045 Max fold change at or above threshold 4 6.95023035758242 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772926_at SPAC23C4.13.S1 --- 6.94630437116185 --- --- --- --- 1.10719811916351 5.22131967544556 7.6909351348877 0.342857986688614 0.805419981479645 0.5 0.398925989866257 0.998778998851776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C4.13 /GEN=bet1 /DEF=SNARE (predicted) --- --- --- --- --- --- SPAC23C4.13 // |bet1||SNARE |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.96244026008244 4.71579528999765 4.09693997029022 6.94630437116185 -3.22931989963844 Max fold change at or above threshold 2 6.94630437116185 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770411_at SPBC409.19c.S1 --- 6.94124854250532 --- --- --- --- 0.794032871723175 1.55027532577515 5.5115795135498 1.33792519569397 0.567627012729645 0.780517995357513 0.274170011281967 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC409.19c /DEF=localization mitochondrial outer membrane (predicted) --- --- --- --- --- --- SPBC409.19c // |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.15188608988023 1.95240698588562 2.72845916136133 6.94124854250532 1.68497456886195 Max fold change at or above threshold 1 6.94124854250532 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771608_at SPAC3G6.11.S1 --- 6.9393336838563 --- --- --- --- 7.83204221725464 7.79988098144531 1.12864470481873 8.46076011657715 0.0805663987994194 0.194580003619194 0.398925989866257 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G6.11 /DEF=DEADDEAH box helicase (predicted) --- --- --- --- --- --- SPAC3G6.11 // |||DEAD/DEAH box helicase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.10898067319822 -1.00412329827671 -1.24237164113039 -6.9393336838563 1.08027509069568 Max fold change at or above threshold 3 6.9393336838563 Max fold change at or above threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1770360_at SPCC550.06c.S1 --- 6.93911240295681 --- --- --- --- 0.739805161952972 0.880892097949982 5.13359117507935 1.37423086166382 0.969726979732513 0.919434010982513 0.753906011581421 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC550.06c /GEN=hsp10 /DEF=heat shock protein (predicted) --- --- --- --- --- --- SPCC550.06c // |hsp10||heat shock protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.03235475135054 1.19070823407688 -1.32065528676723 6.93911240295681 1.85755781702855 Max fold change at or above threshold 1 6.93911240295681 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773931_at YBR066C.S1 Transcriptional repressor that mediates glucose repression and negatively regulates filamentous growth; has similarity to Nrg1p 6.93782636585884 119.083786010742 776.288787841797 NRG2 1403 // invasive growth (sensu Saccharomyces) // inferred from direct assay 5634 // nucleus // inferred from curator 16564 // transcriptional repressor activity // inferred from direct assay 761.779602050781 128.366668701172 109.800903320313 790.797973632813 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR066C /GEN=NRG2 /DB_XREF=GI:6319540 /SEG=NC_001134:-369998,370660 /DEF=Transcriptional repressor that mediates glucose repression and negatively regulates filamentous growth; has similarity to Nrg1p /NOTE=Nrg2p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 11404322]; go_function: transcriptional repressor activity [goid GO:0016564] [evidence IDA] [pmid 11404322]; go_process: invasive growth (sensu Saccharomyces) [goid GO:0001403] [evidence IDA] [pmid 12024013] --- --- --- --- --- --- S0000270 // NRG2 SGDID:S0000270, Chr II from 370697-370035, reverse complement, Verified ORF // sgd // 11 // --- /// YBR066C // cdna:known chromosome:SGD1:II:370035:370697:-1 gene:YBR066C // ensembl // 11 // --- --- No cerevisiae_gene -1.20090959710873 -5.93440345347084 -1.05552381343821 -6.93782636585884 1.03809287030515 Max fold change at or above threshold 4 6.93782636585884 Max fold change at or above threshold 0.827218702633586 -0.840983069661654 -0.889879202155483 0.903643569183552 447.68628692627 379.698034056223 0.848134162569863 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777671_at SPAC2F7.17.S1 --- 6.93392967284926 --- --- --- --- 0.46902272105217 3.25217056274414 0.68277496099472 0.231607407331467 0.870360970497131 0.5 0.633789002895355 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F7.17 /DEF=peptide chain release factor (predicted) --- --- --- --- --- --- SPAC2F7.17 // |||peptide chain release factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.20132150173441 6.93392967284926 1.07262842669597 1.45573962699085 -2.02507651398612 Max fold change at or above threshold 1 6.93392967284926 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770956_at SPBC106.09.S1 --- 6.924973680588 --- --- --- --- 15.3283138275146 15.8281631469727 7.83677053451538 2.79081225395203 0.0561522990465164 0.00805663969367743 0.0561522990465164 0.398925989866257 M P M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC106.09 /GEN=cut4 /DEF=anaphase-promoting complex (APC) --- --- --- --- --- --- SPBC106.09 // |cut4||anaphase-promoting complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.924973680588 1.03260954369037 -1.86105489908061 -1.95594776700484 -5.49242028223449 Max fold change at or above threshold 4 6.924973680588 Max fold change at or above threshold MAPMMA No 4 0 MPMA 1 1 2 No No x = 1
1771928_at SPCC1672.06c.S1 --- 6.92292050713076 --- --- --- --- 0.978223204612732 0.475643038749695 6.77216148376465 0.326786458492279 0.533936023712158 0.725830018520355 0.274170011281967 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1672.06c /GEN=asp1 /DEF=acid phosphatase activity (predicted) --- --- --- --- --- --- SPCC1672.06c // |asp1||acid phosphatase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.31049739269915 -2.056633073374 2.25703335794561 6.92292050713076 -2.99346309858138 Max fold change at or above threshold 1 6.92292050713076 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776840_at SPBC31F10.10c.S1 --- 6.91961311689079 --- --- --- --- 0.951750099658966 6.58574247360229 0.669843912124634 0.245571047067642 0.780517995357513 0.696289002895355 0.976073980331421 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31F10.10c /DEF=zinc finger protein --- --- --- --- --- --- SPBC31F10.10c // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.01620365533039 6.91961311689079 -3.01408109339391 -1.42085354876209 -3.875660877061 Max fold change at or above threshold 1 6.91961311689079 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777757_at SPBC106.18.S1 --- 6.91358390909929 --- --- --- --- 1.95469176769257 13.5139255523682 13.4881057739258 7.26738405227661 0.398925989866257 0.018554700538516 0.030273400247097 0.0461426004767418 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC106.18 /GEN=rpl25a /DEF=60S ribosomal protein L25 --- --- --- --- --- --- SPBC106.18 // |rpl25a||60S ribosomal protein L25|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- U97379 // gb // 1 // Cross Hyb Matching Probes /// U97386 // gb // 5 // Cross Hyb Matching Probes No No 2.63473899081078 6.91358390909929 2.47980297543298 6.90037477870383 3.71791817635548 Max fold change at or above threshold 3 6.91358390909929 Max fold change at or above threshold AAPAPP No 4 0 APPP 1 3 0 No No 2 < x = 3
1769369_at SPCC10H11.01.S1 --- 6.91201493543724 --- --- --- --- 1.46913266181946 10.1546669006348 2.48309326171875 5.58994626998901 0.725830018520355 0.432372987270355 0.633789002895355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC10H11.01 /GEN=prp11 /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPCC10H11.01 // |prp11||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 5.68667616900971 6.91201493543724 -1.23864241573895 1.69017633754296 3.80492954466488 Max fold change at or above threshold 2 6.91201493543724 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771327_at SPBC106.20.S1 --- 6.90743221084649 --- --- --- --- 0.796976983547211 5.50506448745728 3.66105008125305 2.74877977371216 0.725830018520355 0.656494140625 0.5 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC106.20 /GEN=exo70 /DEF=localization exocyst (predicted) --- --- --- --- --- --- SPBC106.20 // |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.66914712414241 6.90743221084649 3.08404026458645 4.59367103044599 3.44900772601713 Max fold change at or above threshold 3 6.90743221084649 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773537_at SPBC577.15c.S1 --- 6.9053497537804 --- --- --- --- 0.345574110746384 0.679682493209839 0.36714780330658 0.137214601039886 0.888427972793579 0.725830018520355 0.904784977436066 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC577.15c /DEF=TPR repeat protein --- --- --- --- --- --- SPBC577.15c // |||TPR repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 6.9053497537804 1.96682121742811 -1.88077422958774 1.06242855552345 -2.51849371806962 Max fold change at or above threshold 0 6.9053497537804 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773039_at SPAC16.03c.S1 --- 6.90149571111426 --- --- --- --- 0.325822621583939 1.45418357849121 2.24866342544556 0.36427515745163 0.828612983226776 0.904784977436066 0.828612983226776 0.981445014476776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16.03c /GEN=ura2 /DEF=dihydroorotase (predicted) --- --- --- --- --- --- SPAC16.03c // |ura2||dihydroorotase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.57106532612481 4.46311422890747 1.98692465868511 6.90149571111426 1.11801677759745 Max fold change at or above threshold 0 6.90149571111426 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775413_at YDR113C.S1 Securin that inhibits anaphase by binding separin Esp1p, also blocks cyclin destruction and mitotic exit, essential for cell cycle arrest in mitosis in the presence of DNA damage or aberrant mitotic spindles; also present in meiotic nuclei 6.89780635326487 94.4391632080078 595.25390625 PDS1 70 // mitotic sister chromatid segregation // inferred from mutant phenotype /// 70 // mitotic sister chromatid segregation // inferred from physical interaction /// 725 // recombinational repair // inferred from genetic interaction /// 725 // recombinational repair // inferred from mutant phenotype /// 6606 // protein-nucleus import // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5819 // spindle // inferred from direct assay 5515 // protein binding // inferred from direct assay 566.999450683594 106.678359985352 82.1999664306641 623.508361816406 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR113C /GEN=PDS1 /DB_XREF=GI:6320318 /SEG=NC_001136:-680490,681611 /DEF=May be an anaphase inhibitor that plays a critical role in control of anaphase by both the anaphase promoting complex (APC) and DNA-damage checkpoints /NOTE=Pds1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11149918]; go_component: spindle [goid GO:0005819] [evidence IDA] [pmid 11149918]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 11149918]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence IMP,IPI]; go_process: protein-nucleus import [goid GO:0006606] [evidence IMP] [pmid 11149918] --- --- --- --- --- --- S0002520 // PDS1 SGDID:S0002520, Chr IV from 681612-680491, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023613 // cdna:GeneFinder chromosome:SGD1:IV:680491:681609:-1 // ensembl // 11 // --- /// GENSCAN00000025180 // cdna:Genscan chromosome:SGD1:IV:680491:681609:-1 // ensembl // 11 // --- /// YDR113C // cdna:known chromosome:SGD1:IV:680491:681612:-1 gene:YDR113C // ensembl // 11 // --- --- No cerevisiae_gene -1.09426681081427 -5.31503718993665 -1.15750896535878 -6.89780635326487 1.09966307915234 Max fold change at or above threshold 4 6.89780635326487 Max fold change at or above threshold 0.765420394805605 -0.820600429929447 -0.904939911040133 0.960119946163975 344.846534729004 290.236473266446 0.841639523779838 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775886_at SPCC1739.09c.S1 --- 6.89627105246961 --- --- --- --- 5.07552766799927 8.65914154052734 3.34245109558105 1.93427610397339 0.366210997104645 0.219482004642487 0.149657994508743 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1739.09c /GEN=cox13 /DEF=cytochrome c oxidase subunit VIa --- --- --- --- --- --- SPCC1739.09c // |cox13||cytochrome c oxidase subunit VIa|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.67431404636001 1.70605740071568 -6.89627105246961 -1.51850469097647 -2.62399336763408 Max fold change at or above threshold 3 6.89627105246961 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773869_at SPBC1604.19c.S1 --- 6.89394330685833 --- --- --- --- 0.677628040313721 0.847212612628937 4.6715292930603 1.61876547336578 0.84521484375 0.633789002895355 0.665526986122131 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1604.19c /DEF=TRAPP (predicted) --- --- --- --- --- --- SPBC1604.19c // |||TRAPP |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.16447597326065 1.25026203496051 -3.84379410921686 6.89394330685833 2.38887026076481 Max fold change at or above threshold 1 6.89394330685833 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774581_at SPBC3B8.10c.S1 --- 6.89106547353531 --- --- --- --- 0.663568615913391 4.57269477844238 1.22017538547516 0.820208132266998 0.904784977436066 0.850341975688934 0.962401986122131 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B8.10c /DEF=NLI interacting factor family --- --- --- --- --- --- SPBC3B8.10c // |||NLI interacting factor family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.00581190737237 6.89106547353531 1.19664615496827 1.83880815971926 1.23605624587594 Max fold change at or above threshold 1 6.89106547353531 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776659_at SPAC4F10.04.S1 --- 6.888529783221 --- --- --- --- 3.73575019836426 0.950738549232483 6.7505145072937 0.54231458902359 0.432372987270355 0.5 0.0676269978284836 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F10.04 /DEF=protein phosphatase type 2A, intrinsic regulator activity (predicted) --- --- --- --- --- --- SPAC4F10.04 // |||protein phosphatase type 2A, intrinsic regulator activity |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.11282941968999 -3.92931390168209 1.67409779083012 1.80700372049756 -6.888529783221 Max fold change at or above threshold 2 6.888529783221 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772885_at SPBC6B1.03c.S1 --- 6.88125192979705 --- --- --- --- 0.875631809234619 6.0254430770874 4.50290775299072 0.30783611536026 0.665526986122131 0.665526986122131 0.601073980331421 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC6B1.03c /DEF=hypothetical protein --- --- --- --- --- --- SPBC6B1.03c // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.36655108511246 6.88125192979705 1.21216345292493 5.14246707977257 -2.84447394422798 Max fold change at or above threshold 2 6.88125192979705 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771891_at SPBC27B12.03c.S1 --- 6.87861963906386 --- --- --- --- 2.04024648666382 3.00760126113892 5.49228048324585 8.03620624542236 0.59228515625 0.5 0.398925989866257 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC27B12.03c /DEF=lathosterol oxidase (ISS) --- --- --- --- --- --- SPBC27B12.03c // |||lathosterol oxidase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.71698961859272 1.4741362285382 6.87861963906386 2.69196909253193 3.93884086944958 Max fold change at or above threshold 3 6.87861963906386 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772938_at SPBC800.08.S1 --- 6.87830333580762 --- --- --- --- 0.820091784000397 5.64084005355835 0.440644025802612 4.13980627059937 0.805419981479645 0.129638999700546 0.533936023712158 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC800.08 /DEF=translation initiation factor --- --- --- --- --- --- SPBC800.08 // |||translation initiation factor eIF-3 gamma subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.29207280808282 6.87830333580762 3.79199057014692 -1.86112085034317 5.04797920350506 Max fold change at or above threshold 2 6.87830333580762 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774941_at SPAC3A11.05c.S1 --- 6.87261243512565 --- --- --- --- 3.89698243141174 11.3000402450562 2.47293305397034 3.31663751602173 0.466064006090164 0.0676269978284836 0.39013671875 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A11.05c /GEN=kms1 /DEF=meiosis specific protein --- --- --- --- --- --- SPAC3A11.05c // |kms1||meiosis specific protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.87261243512565 2.89968980972864 -1.47837438891477 -1.57585439895151 -1.17497990437198 Max fold change at or above threshold 3 6.87261243512565 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1771683_at SPBC19G7.16.S1 --- 6.86892820162 --- --- --- --- 7.86762237548828 1.14539301395416 3.50755405426025 2.66625285148621 0.366210997104645 0.533936023712158 0.5 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19G7.16 /DEF=transcription elongation factor complex (predicted) --- --- --- --- --- --- SPBC19G7.16 // |isw1||transcription elongation factor complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.37724778781135 -6.86892820162 -3.4075231053738 -2.24305092773476 -2.95081630052557 Max fold change at or above threshold 3 6.86892820162 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779797_at SPAP7G5.04c.S1 --- 6.8641292918668 --- --- --- --- 0.939291834831238 0.394910514354706 6.44742059707642 2.7444064617157 0.633789002895355 0.696289002895355 0.432372987270355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP7G5.04c /GEN=lys1 /DEF=aminoadipate-semialdehyde dehydrogenase --- --- --- --- --- --- SPAP7G5.04c // |lys1||aminoadipate-semialdehyde dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.77245765545919 -2.37849285012344 -2.1269684767701 6.8641292918668 2.92178251736723 Max fold change at or above threshold 2 6.8641292918668 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778603_at SPBC685.04c.S1 --- 6.86111715395517 --- --- --- --- 0.771284520626068 5.29187345504761 2.73518037796021 4.3867826461792 0.398925989866257 0.334473013877869 0.533936023712158 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC685.04c /GEN=aps2 /DEF=AP-2 adaptor complex (predicted) --- --- --- --- --- --- SPBC685.04c // |aps2||AP-2 adaptor complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.25600465285683 6.86111715395517 4.05588064983272 3.54626639691926 5.68763216279558 Max fold change at or above threshold 3 6.86111715395517 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774047_at SPAC11D3.09.S1 --- 6.86014723699089 --- --- --- --- 0.335600763559341 2.30227065086365 1.11965799331665 1.70026969909668 0.943848013877869 0.828612983226776 0.919434010982513 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11D3.09 /DEF=arginase family protein --- --- --- --- --- --- SPAC11D3.09 // |||arginase family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.01115404832718 6.86014723699089 1.41130068459047 3.33627963608215 5.06634633683137 Max fold change at or above threshold 0 6.86014723699089 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770629_at SPBC1604.02c.S1 --- 6.85725878205018 --- --- --- --- 0.550598323345184 2.62562727928162 3.77559518814087 0.231931999325752 0.828612983226776 0.633789002895355 0.466064006090164 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1604.02c /DEF=PPR domains (context dependent) --- --- --- --- --- --- SPBC1604.02c // |||PPR domains |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 6.18019558740253 4.76868012116256 -1.54643106580534 6.85725878205018 -2.37396445917693 Max fold change at or above threshold 2 6.85725878205018 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772537_at SPBC1A4.02c.S1 --- 6.84637487572962 --- --- --- --- 1.74599778652191 4.32237529754639 11.9537553787231 1.65960204601288 0.665526986122131 0.366210997104645 0.24609400331974 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1A4.02c /GEN=leu1 /DEF=3-isopropylmalate dehydrogenase (PMID 3063400) --- --- --- --- --- --- SPBC1A4.02c // |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.49233687371917 2.47559036495499 2.43166366606172 6.84637487572962 -1.0520581067712 Max fold change at or above threshold 2 6.84637487572962 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773803_at SPBC1778.10c.S1 --- 6.84621215840526 --- --- --- --- 0.78793066740036 3.64733815193176 5.39434051513672 4.49137926101685 0.805419981479645 0.601073980331421 0.194580003619194 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1778.10c /DEF=phosphoinositide-dependent protein kinase 1 (predicted) --- --- --- --- --- --- SPBC1778.10c // ||SPBC4C3.11|phosphoinositide-dependent kinase 1 family |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 6.15609363987442 4.62900900147156 6.067077616842 6.84621215840526 5.70022141140333 Max fold change at or above threshold 3 6.84621215840526 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773543_at SPAC24C9.15c.S1 --- 6.84032805292697 --- --- --- --- 3.12706971168518 0.978841006755829 1.7757933139801 0.495556026697159 0.753906011581421 0.888427972793579 0.850341975688934 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24C9.15c /GEN=spn5 /DEF=septin (predicted) --- --- --- --- --- --- AB054312 // Schizosaccharomyces pombe mRNA for Meu28, partial cds. // gb // 10 // --- /// SPAC24C9.15c // |spn5|mde9, meu28|septin |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.78118692140898 -3.1946656199552 -6.84032805292697 -1.76094238392893 -6.31022436055687 Max fold change at or above threshold 1 6.84032805292697 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771877_at SPBC119.14.S1 --- 6.83938948244398 --- --- --- --- 0.408476799726486 1.46120941638947 1.00093078613281 0.292554318904877 0.932372987270355 0.870360970497131 0.919434010982513 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC119.14 /GEN=rti1 /DEF=DNA binding --- --- --- --- --- --- SPBC119.14 // |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 6.83938948244398 3.57721519892411 1.44994920914298 2.45039812984001 -1.39624258925845 Max fold change at or above threshold 0 6.83938948244398 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777169_at SPBC29A3.05.S1 --- 6.83259605882234 --- --- --- --- 0.864834845066071 5.90906715393066 2.61486744880676 1.78970670700073 0.334473013877869 0.129638999700546 0.24609400331974 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A3.05 /DEF=zinc finger protein --- --- --- --- --- --- SPBC29A3.05 // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.19357427443676 6.83259605882234 1.2290000476239 3.02354543613121 2.06942021035705 Max fold change at or above threshold 2 6.83259605882234 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780153_at SPBC19C2.14.S1 --- 6.82894158401601 --- --- --- --- 3.15405750274658 0.461866229772568 2.43221116065979 4.1361870765686 0.7470703125 0.665526986122131 0.466064006090164 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C2.14 /GEN=smd3 /DEF=small nuclear ribonucleoprotein (snRNP) --- --- --- --- --- --- SPBC19C2.14 // |smd3||small nuclear ribonucleoprotein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.65483742024008 -6.82894158401601 -1.89595007240728 -1.29678604956774 1.3113860711058 Max fold change at or above threshold 2 6.82894158401601 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775235_at YBL003C.S1 One of two nearly identical (see also HTA1) histone H2A subtypes; core histone required for chromatin assembly and chromosome function; DNA damage-dependent phosphorylation by Mec1p facilitates DNA repair; acetylated by Nat4p 6.82725844430842 1082.97509765625 183.114921569824 HTA2 6281 // DNA repair // inferred from mutant phenotype /// 6333 // chromatin assembly or disassembly // traceable author statement 788 // nuclear nucleosome // traceable author statement 3677 // DNA binding // traceable author statement 169.804748535156 1108.0263671875 1057.923828125 196.425094604492 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL003C /GEN=HTA2 /DB_XREF=GI:6319470 /SEG=NC_001134:-235359,235757 /DEF=Histone H2A (HTA1 and HTA2 code for nearly identical proteins) /NOTE=Hta2p; go_component: nuclear nucleosome [goid GO:0000788] [evidence TAS] [pmid 2275823]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 2275823]; go_process: chromatin assembly/disassembly [goid GO:0006333] [evidence TAS] [pmid 2275823] --- --- --- --- --- --- S0000099 // HTA2 SGDID:S0000099, Chr II from 235795-235397, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021137 // cdna:Genscan chromosome:SGD1:II:235397:235795:-1 // ensembl // 11 // --- /// YBL003C // cdna:known chromosome:SGD1:II:235397:235795:-1 gene:YBL003C // ensembl // 11 // --- --- No cerevisiae_gene 6.82725844430842 6.52529671134665 1.25491700277598 6.23023700603972 1.15677032767917 Max fold change at or above threshold 4 6.82725844430842 Max fold change at or above threshold -0.890760027279117 0.913336863349555 0.816995196158925 -0.839572032229363 633.045009613037 520.050571300194 0.821506470160923 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778918_at SPBC18E5.11c.S1 --- 6.82645113452768 --- --- --- --- 3.25079417228699 3.45375776290894 4.36524963378906 0.543477177619934 0.432372987270355 0.398925989866257 0.398925989866257 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18E5.11c /DEF=involved in mRNA decapping (regulation) (ISS) --- --- --- --- --- --- SPBC18E5.11c // ||SPBC23G7.01c|YjeF-related protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.18274866721736 1.06243507889617 -6.82645113452768 1.34282559966509 -5.98147319915675 Max fold change at or above threshold 3 6.82645113452768 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774704_at SPBC800.09.S1 --- 6.82316660692457 --- --- --- --- 1.03760719299316 7.07976675033569 2.29991984367371 0.377793967723846 0.919434010982513 0.725830018520355 0.888427972793579 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC800.09 /GEN=sum2 /DEF=involved in G2M transition checkpoint (required) (PMID 9832516) --- --- --- --- --- --- SPBC800.09 // |sum2||involved in G2/M transition checkpoint |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- D89169 // gb // 8 // Cross Hyb Matching Probes No No 1.04715041681602 6.82316660692457 -2.664534813508 2.21656119888604 -2.74648957272822 Max fold change at or above threshold 1 6.82316660692457 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775198_at SPCC297.06c.S1 --- 6.81961569384224 --- --- --- --- 1.66740119457245 3.19425201416016 5.07905387878418 2.26860523223877 0.567627012729645 0.274170011281967 0.219482004642487 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC297.06c /DEF=sequence orphan --- --- --- --- --- --- SPCC297.06c // ||SPCC737.01c|mitochondrial ribosomal protein subunit 8|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 1.9198783171012 1.91570692437894 -6.81961569384224 3.04608986446513 1.36056351622111 Max fold change at or above threshold 2 6.81961569384224 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771573_at SPBC428.17c.S1 --- 6.81912373670955 --- --- --- --- 0.776912331581116 2.80446290969849 0.642460346221924 0.113931402564049 0.633789002895355 0.274170011281967 0.696289002895355 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC428.17c /DEF=serine-rich protein --- --- --- --- --- --- SPBC428.17c // |||serine-rich protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.20392597265119 3.60975466046606 4.23438914763105 -1.20927670657007 -6.81912373670955 Max fold change at or above threshold 1 6.81912373670955 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775575_at SPAC343.16.S1 --- 6.81844393377367 --- --- --- --- 3.61097979545593 0.529590010643005 6.62903594970703 3.80784797668457 0.24609400331974 0.953857004642487 0.0239257998764515 0.219482004642487 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC343.16 /GEN=lys2 /DEF=homoaconitate hydratase --- --- --- --- --- --- SPAC343.16 // |lys2||homoaconitate hydratase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.38800551772981 -6.81844393377367 -1.06072090979043 1.83579978986563 1.0545193250531 Max fold change at or above threshold 3 6.81844393377367 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1776982_at SPAC19A8.03.S1 --- 6.81834658006171 --- --- --- --- 1.67555165290833 0.970106780529022 4.64654207229614 6.74075126647949 0.753906011581421 0.780517995357513 0.398925989866257 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19A8.03 /DEF=myotubularin-related protein --- --- --- --- --- --- SPAC19A8.03 // |||myotubularin-related protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.07646604407968 -1.72718270456228 6.81834658006171 2.77314164814373 4.02300415793168 Max fold change at or above threshold 2 6.81834658006171 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775324_at SPAC4G8.06c.S1 --- 6.81610392458338 --- --- --- --- 4.09806299209595 0.715875804424286 0.601232469081879 1.56989121437073 0.432372987270355 0.753906011581421 0.805419981479645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G8.06c /DEF=conserved fungal protein --- --- --- --- --- --- SPAC4G8.06c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.6646363433242 -5.72454463018435 1.1275813010566 -6.81610392458338 -2.61041208115723 Max fold change at or above threshold 1 6.81610392458338 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775356_at SPAC1002.04c.S1 --- 6.81597449833051 --- --- --- --- 2.22369432449341 5.30056619644165 0.326247453689575 2.33415746688843 0.665526986122131 0.111571997404099 0.753906011581421 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1002.04c /GEN=taf11 /DEF=transcription initiation factor activity --- --- --- --- --- --- SPAC1002.04c // |taf11||transcription initiation factor Taf11|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.43068893821984 2.38367573189233 2.44939995818524 -6.81597449833051 1.04967550673593 Max fold change at or above threshold 1 6.81597449833051 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775434_at SPBP22H7.07.S1 --- 6.80921419746183 --- --- --- --- 0.932180106639862 0.301895290613174 6.34741401672363 1.02651417255402 0.524658203125 0.805419981479645 0.0952147990465164 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP22H7.07 /GEN=prp5 /DEF=WD repeat protein --- --- --- --- --- --- SPBP22H7.07 // |prp5|cwf1|WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.14351476050732 -3.08775968232736 1.18021748550631 6.80921419746183 1.10119725280793 Max fold change at or above threshold 1 6.80921419746183 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771259_at SPMIT.10.S1 --- 6.80048815450614 --- --- --- --- 1.351034283638 1.35378789901733 4.44540786743164 1.17671585083008 0.753906011581421 0.780517995357513 0.432372987270355 0.6884765625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPMIT.10 /GEN=atp9 /DEF=ATPase (subunit 9) --- --- --- --- --- --- SPMIT.10 // |atp9||F0-ATPase subunit 9|Schizosaccharomyces pombe|chr mitochondrial|||Manual // sanger // 11 // --- --- No No 2.80521140494245 1.0020381535929 6.80048815450614 3.29037384266908 -1.14813978471094 Max fold change at or above threshold 1 6.80048815450614 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777984_at SPAP27G11.11c.S1 --- 6.79922720443469 --- --- --- --- 0.814206600189209 3.67853927612305 3.9326479434967 0.844951272010803 0.633789002895355 0.525634765625 0.064453125 0.219482004642487 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP27G11.11c /DEF=dubious --- --- --- --- --- --- SPAP27G11.11c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.79922720443469 4.51794332699859 -4.09051119786319 4.83003692500505 1.0377602832186 Max fold change at or above threshold 2 6.79922720443469 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1774722_at SPAC27D7.14c.S1 --- 6.79171149109773 --- --- --- --- 0.659327268600464 0.808977782726288 4.47796058654785 1.32772195339203 0.398925989866257 0.432372987270355 0.303710997104645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27D7.14c /GEN=tpr1 /DEF=TPR repeat protein --- --- --- --- --- --- AF047464 // Schizosaccharomyces pombe Tpr1 (tpr1) mRNA, complete cds. // gb // 11 // --- /// SPAC27D7.14c // |tpr1|SPAC637.02c|TPR repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.06471250197316 1.22697455611609 -1.5898574986319 6.79171149109773 2.01375252719389 Max fold change at or above threshold 1 6.79171149109773 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775100_at SPBC1778.02.S1 --- 6.78841528344884 --- --- --- --- 1.93978381156921 5.17056274414063 1.65846157073975 0.285749137401581 0.466064006090164 0.0676269978284836 0.398925989866257 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1778.02 /GEN=rap1 /DEF=involved in telomere maintenance --- --- --- --- --- --- AY034032 // Schizosaccharomyces pombe Rap1 (rap1) mRNA, complete cds. // gb // 11 // --- /// SPBC1778.02 // |rap1||telomere binding protein Rap1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.70452339485801 2.66553556808881 1.55827273774241 -1.16962843504658 -6.78841528344884 Max fold change at or above threshold 1 6.78841528344884 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777626_at SPBC27B12.05.S1 --- 6.78682370273864 --- --- --- --- 9.96819019317627 3.64154410362244 1.46875631809235 6.90290355682373 0.0239257998764515 0.129638999700546 0.303710997104645 0.0239257998764515 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC27B12.05 /DEF=WD repeat protein --- --- --- --- --- --- SPBC27B12.05 // |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.73195495010429 -2.73735259261597 -2.68908296999404 -6.78682370273864 -1.44405757825233 Max fold change at or above threshold 3 6.78682370273864 Max fold change at or above threshold PAAAAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1773536_at SPBC19C7.11.S1 --- 6.78619474232728 --- --- --- --- 0.847415864467621 0.304257094860077 5.75072908401489 0.52481609582901 0.601073980331421 0.665526986122131 0.149657994508743 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C7.11 /DEF=ClC chloride channel (predicted) --- --- --- --- --- --- SPBC19C7.11 // |||ClC chloride channel |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.50955530942313 -2.78519672600349 2.56524416521614 6.78619474232728 -1.61469107217267 Max fold change at or above threshold 1 6.78619474232728 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772058_at SPBC365.11.S1 --- 6.78596431696762 --- --- --- --- 0.461971908807755 0.79087221622467 0.40389695763588 0.18109866976738 0.870360970497131 0.932372987270355 0.753906011581421 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC365.11 /DEF=GRIP domain --- --- --- --- --- --- SPBC365.11 // |||GRIP domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.30471514956418 1.71194871624496 6.78596431696762 -1.14378655266879 -2.55094037632168 Max fold change at or above threshold 0 6.78596431696762 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772634_at SPCP31B10.06.S1 --- 6.78553113570019 --- --- --- --- 7.88708162307739 10.9143781661987 5.58029222488403 2.73725485801697 0.0805663987994194 0.0805663987994194 0.00585938012227416 0.0676269978284836 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP31B10.06 /DEF=C2 domain --- --- --- --- --- --- SPCP31B10.06 // |||C2 domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.21195605383091 1.38382974689441 -6.78553113570019 -1.41338146914722 -2.8813837337716 Max fold change at or above threshold 4 6.78553113570019 Max fold change at or above threshold APAAPA No 4 0 AAPA 3 1 0 No No x = 1
1774579_at SPAC328.03.S1 --- 6.78352152912193 --- --- --- --- 15.5976095199585 9.70409870147705 7.46089172363281 2.2993381023407 0.107177734375 0.303710997104645 0.129638999700546 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC328.03 /GEN=tps1 /DEF=alpha,alpha-trehalose-phosphate synthase (UDP-forming) --- --- --- --- --- --- SPAC328.03 // |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.03869572526367 -1.60732181316173 -2.13195737200816 -2.09058247964545 -6.78352152912193 Max fold change at or above threshold 3 6.78352152912193 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777002_at SPCC31H12.08c.S1 --- 6.78097739240437 --- --- --- --- 1.65627312660217 11.2311506271362 5.96549463272095 2.06825590133667 0.601073980331421 0.274170011281967 0.334473013877869 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC31H12.08c /GEN=ccr4 /DEF=CCR4-Not complex (predicted) --- --- --- --- --- --- SPCC31H12.08c // |ccr4|SPCC5E4.02c|CCR4-Not complex |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.46819357029518 6.78097739240437 -1.48088610837037 3.6017577879556 1.24874084359485 Max fold change at or above threshold 2 6.78097739240437 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779181_at SPCC330.08.S1 --- 6.78025301782555 --- --- --- --- 0.360658079385757 2.44535303115845 1.33081161975861 0.244141668081284 0.943848013877869 0.780517995357513 0.805419981479645 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC330.08 /GEN=alg11 /DEF=glycosyl transferase family 1 --- --- --- --- --- --- SPCC330.08 // |alg11|gmd3|mannosyltransferase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.45486447869994 6.78025301782555 -1.55069377202745 3.68995371467938 -1.47724918167464 Max fold change at or above threshold 0 6.78025301782555 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779788_at SPAC1093.03.S1 --- 6.77863950605743 --- --- --- --- 1.83255171775818 7.47915697097778 0.406329691410065 0.793484032154083 0.850341975688934 0.432372987270355 0.953857004642487 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1093.03 /DEF=polyphosphoinositide phosphatase activity (predicted) --- --- --- --- --- --- SPAC1093.03 // |||polyphosphoinositide phosphatase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.59241758870913 4.08128016170113 -6.77863950605743 -4.51001183644437 -2.30950043541938 Max fold change at or above threshold 1 6.77863950605743 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769343_at SPAPB8E5.05.S1 --- 6.77855227378033 --- --- --- --- 2.70797252655029 2.45406150817871 3.92761754989624 2.36750316619873 0.567627012729645 0.432372987270355 0.366210997104645 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB8E5.05 /GEN=mfm1 /DEF=M-factor precursor (PMID 8196631) --- --- --- --- --- --- SPAPB8E5.05 // |mfm1||M-factor precursor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.52560719439836 -1.10346562933544 -6.77855227378033 1.45039047161223 -1.14380946357855 Max fold change at or above threshold 2 6.77855227378033 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777688_at SPAC1834.06c.S1 --- 6.77831332073086 --- --- --- --- 1.05621421337128 0.699950397014618 1.11686730384827 0.19033382833004 0.665526986122131 0.969726979732513 0.9296875 0.991943001747131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1834.06c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC1834.06c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.77831332073086 -1.50898437643035 4.39665572894958 1.057424989845 -5.54927215323907 Max fold change at or above threshold 0 6.77831332073086 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772993_at SPCC24B10.11c.S1 --- 6.77805166463648 --- --- --- --- 1.740807056427 4.37549209594727 11.799280166626 4.41676235198975 0.780517995357513 0.601073980331421 0.601073980331421 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC24B10.11c /DEF=sequence orphan --- --- --- --- --- --- SPCC24B10.11c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.00296701543413 2.51348481142301 -1.12237471139272 6.77805166463648 2.53719235321525 Max fold change at or above threshold 3 6.77805166463648 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779869_at SPCC663.01c.S1 --- 6.77437818204722 --- --- --- --- 0.567799806594849 3.84649062156677 0.516405403614044 1.45060861110687 0.932372987270355 0.466064006090164 0.780517995357513 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC663.01c /GEN=eck1 /DEF=sap2 family --- --- --- --- --- --- SPCC663.01c // |eck1|SPCC777.16c|sap2 family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.67799806594849 6.77437818204722 -3.50824988007958 -1.0995233640491 2.55478884328319 Max fold change at or above threshold 1 6.77437818204722 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774630_at SPBC16D10.04c.S1 --- 6.77052246162791 --- --- --- --- 0.361262619495392 2.44593667984009 0.316924005746841 0.490567147731781 0.870360970497131 0.567627012729645 0.919434010982513 0.657470703125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16D10.04c /GEN=dna2 /DEF=DNA helicase --- --- --- --- --- --- SPBC16D10.04c // |dna2||DNA replication helicase Dna2|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.30302388342745 6.77052246162791 3.70619904599602 -1.1399029828746 1.35792390703749 Max fold change at or above threshold 0 6.77052246162791 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777339_at SPAC1039.02.S1 --- 6.76996399698579 --- --- --- --- 2.60249447822571 1.02781856060028 4.73807048797607 0.606058955192566 0.696289002895355 0.633789002895355 0.466064006090164 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1039.02 /DEF=calcineurin-like phosphoesterase (predicted) --- --- --- --- --- --- SPAC1039.02 // |||calcineurin-like phosphoesterase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.5826094874947 -2.53205631615152 -6.76996399698579 1.82058810407403 -4.29412758598511 Max fold change at or above threshold 2 6.76996399698579 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772661_at SPAC7D4.05.S1 --- 6.76982753402438 --- --- --- --- 2.61312866210938 0.385996341705322 5.35072326660156 0.500247299671173 0.5 0.633789002895355 0.366210997104645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC7D4.05 /DEF=hydrolase (predicted) --- --- --- --- --- --- SPAC7D4.05 // |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.08918961381924 -6.76982753402438 1.6055812929917 2.04763100423932 -5.22367369864277 Max fold change at or above threshold 2 6.76982753402438 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771939_at SPCC1919.06c.S1 --- 6.76964880718531 --- --- --- --- 0.236905306577683 0.350613504648209 0.322997003793716 0.228012844920158 0.943848013877869 0.962401986122131 0.985840022563934 0.981445014476776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1919.06c /GEN=wtf25 /DEF=wtf element --- --- --- --- --- --- SPCC1919.06c // |wtf25|SPCC1919.06c|wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.88379707048098 1.47997319989639 6.76964880718531 1.36340130349847 -1.03899982766602 Max fold change at or above threshold 0 6.76964880718531 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776010_at YJL190C.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps22Bp and has similarity to E. coli S8 and rat S15a ribosomal proteins 6.76963202272854 206.311698913574 1331.63439941406 RPS22A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 1337.54907226563 197.580764770508 215.042633056641 1325.7197265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL190C /GEN=RPS22A /DB_XREF=GI:6322271 /SEG=NC_001142:-74909,75301 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps22Bp and has similarity to E. coli S8 and rat S15a ribosomal proteins /NOTE=Rps22ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0003726 // RPS22A SGDID:S0003726, Chr X from 75301-74909, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000023995 // cdna:Genscan chromosome:SGD1:X:74909:75301:-1 // ensembl // 11 // --- /// GENEFINDER00000024364 // cdna:GeneFinder chromosome:SGD1:X:74909:75301:-1 // ensembl // 11 // --- /// YJL190C // cdna:known chromosome:SGD1:X:74909:75301:-1 gene:YJL190C // ensembl // 11 // --- --- No cerevisiae_gene 1.78897404647646 -6.76963202272854 -2.26584930508446 -6.21992510626172 -1.00892296121579 Max fold change at or above threshold 4 6.76963202272854 Max fold change at or above threshold 0.875052182206934 -0.879386476107249 -0.852512240598984 0.856846534499299 768.973049163818 649.762419502599 0.844974242217138 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773812_at SPBC4B4.12c.S1 --- 6.76685882279199 --- --- --- --- 2.70904278755188 1.48579394817352 7.2083888053894 3.74601483345032 0.466064006090164 0.5 0.303710997104645 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4B4.12c /DEF=dubious --- --- --- --- --- --- SPBC4B4.12c // |||dubious|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.42622020815928 -1.82329642066593 -6.76685882279199 2.66086192455584 1.3827817156168 Max fold change at or above threshold 3 6.76685882279199 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769659_at YIR039C.S1 Putative GPI-anchored aspartic protease 6.76425263958342 168.491333007813 48.6192684173584 YPS6 --- 9277 // cell wall (sensu Fungi) // inferred from direct assay 4190 // aspartic-type endopeptidase activity // inferred from sequence similarity 54.0045204162598 129.329727172852 207.652938842773 43.234016418457 0.000732421991415322 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR039C /GEN=YPS6 /DB_XREF=GI:6322230 /SEG=NC_001141:-430494,432107 /DEF=Putative GPI-anchored aspartic protease /NOTE=Yps6p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: aspartic-type endopeptidase activity [goid GO:0004190] [evidence ISS] [pmid 10191273]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001478 // YPS6 SGDID:S0001478, Chr IX from 432107-430494, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019005 // cdna:GeneFinder chromosome:SGD1:IX:430217:432107:-1 // ensembl // 10 // --- /// GENSCAN00000016507 // cdna:Genscan chromosome:SGD1:IX:430494:431897:-1 // ensembl // 11 // --- /// YIR039C // cdna:known chromosome:SGD1:IX:430494:432107:-1 gene:YIR039C // ensembl // 11 // --- --- No cerevisiae_gene -6.76425263958342 2.39479447601784 1.01564050363634 3.84510291438961 -1.24912105999027 Max fold change at or above threshold 4 6.76425263958342 Max fold change at or above threshold -0.7143480733274 0.272043249166363 1.29769375405917 -0.855388929898129 108.555300712585 76.3644255974972 0.703461047928761 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772788_at SPCC1442.11c.S1 --- 6.75822936521076 --- --- --- --- 1.09519851207733 7.40160274505615 3.62301993370056 0.521064698696136 0.696289002895355 0.274170011281967 0.601073980331421 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1442.11c /DEF=hypothetical protein --- --- --- --- --- --- SPCC1442.11c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.05122399198674 6.75822936521076 2.42127849524408 3.30809428039539 -2.10184745736538 Max fold change at or above threshold 2 6.75822936521076 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769611_at SPAC3F10.03.S1 --- 6.75668011140899 --- --- --- --- 2.03807902336121 13.7706480026245 10.343090057373 2.95276021957397 0.533936023712158 0.149657994508743 0.0461426004767418 0.366210997104645 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3F10.03 /DEF=glycine tRNA-ligase --- --- --- --- --- --- SPAC3F10.03 // |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.24743051941299 6.75668011140899 3.7636308314508 5.07492101082282 1.44879574625339 Max fold change at or above threshold 3 6.75668011140899 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1773029_at SPAC630.03.S1 --- 6.75384340338333 --- --- --- --- 0.768478810787201 0.42108154296875 5.190185546875 1.59919059276581 0.953857004642487 0.5 0.533936023712158 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC630.03 /GEN=arp3 /DEF=ARP23 actin-organizing complex --- --- --- --- --- --- SPAC630.03 // |arp3|act2|actin-like protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.51506402537514 -1.82501186199993 1.5530648374478 6.75384340338333 2.08098202620272 Max fold change at or above threshold 1 6.75384340338333 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778602_at SPAC3C7.05c.S1 --- 6.75338919277832 --- --- --- --- 2.7053210735321 0.400587171316147 1.94063544273376 0.78464686870575 0.725830018520355 0.989257991313934 0.633789002895355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3C7.05c /DEF=glycosyl hydrolase family 76 --- --- --- --- --- --- SPAC3C7.05c // |||glycosyl hydrolase family 76|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.10073544112644 -6.75338919277832 -3.36110642519217 -1.39403878438968 -3.44781988105611 Max fold change at or above threshold 1 6.75338919277832 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773447_at SPBC16E9.05.S1 --- 6.75033333835538 --- --- --- --- 5.12748670578003 0.759590148925781 3.830810546875 0.8225057721138 0.194580003619194 0.5 0.366210997104645 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16E9.05 /DEF=delta-sterol c-methyltransferase (predicted) --- --- --- --- --- --- D89131 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0514. // gb // 11 // --- /// SPBC16E9.05 // |erg6||delta-sterol C-methyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.8063455120369 -6.75033333835538 -2.55743650329784 -1.33848610967274 -6.2339826413651 Max fold change at or above threshold 2 6.75033333835538 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772453_at SPCC576.17c.S1 --- 6.7495352571721 --- --- --- --- 2.6064658164978 10.1426277160645 0.717334628105164 0.842660784721375 0.533936023712158 0.149657994508743 0.888427972793579 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC576.17c /DEF=transporter --- --- --- --- --- --- SPCC576.17c // |||membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -6.7495352571721 3.89133348761607 1.52868487995675 -3.63354244222501 -3.09313767028998 Max fold change at or above threshold 2 6.7495352571721 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775212_s_at SPCC1450.08c.S1 --- 6.74911464662504 --- --- --- --- 0.416476905345917 1.39104342460632 1.42822623252869 2.8108503818512 0.803710997104645 0.61132800579071 0.61132800579071 0.165039002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1450.08c /GEN=wtf16 /DEF=wtf element --- --- --- --- --- --- SPCC1450.08c // |wtf16||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 9 // --- /// SPCC285.07c // |wtf18||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 9 // --- /// SPCC830.02 // |wtf24||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 9 // --- /// SPCC162.04c // |wtf13||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 9 // --- --- No No -2.1135840881427 3.34002535735073 3.14210749953881 3.42930475662854 6.74911464662504 Max fold change at or above threshold 1 6.74911464662504 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773617_at YCL001W-A.S1 Hypothetical protein 6.74634695474127 23.1296644210815 4.97790718078613 --- --- --- --- 4.33791780471802 29.2650985717773 16.9942302703857 5.61789655685425 0.533936023712158 0.0952147990465164 0.129638999700546 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL001W-A /GEN=RER1 /DB_XREF=GI:6319845 /SEG=NC_001135:+113077,113538 /DEF=Hypothetical ORF /NOTE=Ycl001w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007221 // YCL001W-A SGDID:S0007221, Chr III from 113077-113538, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022461 // cdna:Genscan chromosome:SGD1:III:113077:113538:1 // ensembl // 11 // --- /// YCL001W-A // cdna:known chromosome:SGD1:III:113077:113538:1 gene:YCL001W-A // ensembl // 11 // --- --- No cerevisiae_gene 3.18531982056601 6.74634695474127 1.14030951912733 3.91760080191064 1.29506754386727 Max fold change at or above threshold 4 6.74634695474127 Max fold change at or above threshold -0.835597705405502 1.30822465398591 0.252888229080849 -0.725515177661259 14.0537858009338 11.6274469560694 0.827353363767422 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773408_at SPCC63.03.S1 --- 6.7433315887139 --- --- --- --- 1.50325298309326 10.1369333267212 9.73385334014893 3.18329119682312 0.533936023712158 0.194580003619194 0.149657994508743 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC63.03 /DEF=DNAJ domain protein --- --- --- --- --- --- SPCC63.03 // |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -6.31442680303976 6.7433315887139 -2.14683707050426 6.47519309765111 2.11760178268386 Max fold change at or above threshold 3 6.7433315887139 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778755_at SPAC630.14c.S1 --- 6.74281700279114 --- --- --- --- 2.31432247161865 3.58921837806702 7.78452205657959 7.58169841766357 0.725830018520355 0.780517995357513 0.466064006090164 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC630.14c /GEN=tup1 /DEF=transcriptional co-repressor activity (PMID 10567571) --- --- --- --- --- --- U92792 // Schizosaccharomyces pombe general transcriptional repressor Tup1 (tup1) mRNA, partial cds. // gb // 10 // --- /// SPAC630.14c // |tup1|tup12|transcriptional co-repressor Tup1 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.02222608353171 1.55087219783883 -6.74281700279114 3.36362894628727 3.27599049425506 Max fold change at or above threshold 3 6.74281700279114 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778433_at YOR129C.S1 Putative component of the outer plaque of the spindle pole body; may be involved in cation homeostasis or multidrug resistance 6.74261420315392 106.179161071777 710.546630859375 --- 30003 // cation homeostasis // inferred from genetic interaction /// 30003 // cation homeostasis // inferred from mutant phenotype /// 42493 // response to drug // inferred from genetic interaction /// 42493 // response to drug // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5824 // outer plaque of spindle pole body // inferred from physical interaction 5200 // structural constituent of cytoskeleton // inferred from genetic interaction /// 5200 // structural constituent of cytoskeleton // inferred from physical interaction 663.994201660156 113.881057739258 98.4772644042969 757.099060058594 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR129C /GEN=ADE2 /DB_XREF=GI:6324703 /SEG=NC_001147:-566877,569558 /DEF=Putative component of the outer plaque of the spindle pole body; may be involved in cation homeostasis or multidrug resistance /NOTE=Yor129cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: outer plaque of spindle pole body [goid GO:0005824] [evidence IPI] [pmid 14515169]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI,IGI] [pmid 14515169]; go_process: cation homeostasis [goid GO:0030003] [evidence IGI,IMP] [pmid 14515169]; go_process: response to drug [goid GO:0042493] [evidence IGI,IMP] [pmid 14515169] --- --- --- --- --- --- S0005655 // YOR129C SGDID:S0005655, Chr XV from 569558-566877, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017557 // cdna:Genscan chromosome:SGD1:XV:566877:569558:-1 // ensembl // 11 // --- /// GENEFINDER00000022851 // cdna:GeneFinder chromosome:SGD1:XV:566877:569351:-1 // ensembl // 11 // --- /// YOR129C // cdna:known chromosome:SGD1:XV:566877:569558:-1 gene:YOR129C // ensembl // 11 // --- --- No cerevisiae_gene -1.79921446617993 -5.83059390948439 -1.18305454562063 -6.74261420315392 1.14021938469591 Max fold change at or above threshold 4 6.74261420315392 Max fold change at or above threshold 0.728186030862548 -0.838854851351159 -0.882733777284486 0.993402597773097 408.362895965576 351.052196636869 0.859657427511391 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769882_s_at SPAC977.11.S1 --- 6.74162567208045 --- --- --- --- 2.59309935569763 0.384640067815781 4.79856204986572 0.728198230266571 0.5 0.688720703125 0.274170011281967 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC977.11 /DEF=hypothetical protein --- --- --- --- --- --- SPAC977.11 // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPBPB8B6.06c // ||SPAPB8B6.06c|hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.42421774716959 -6.74162567208045 1.21037835937341 1.85051222172501 -3.5609800297762 Max fold change at or above threshold 2 6.74162567208045 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769736_at SPBC21B10.13c.S1 --- 6.73811579234491 --- --- --- --- 0.826877117156982 5.57159376144409 3.62132358551025 0.257530331611633 0.753906011581421 0.567627012729645 0.219482004642487 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21B10.13c /DEF=transcriptional regulator (putative) --- --- --- --- --- --- SPBC21B10.13c // |||transcriptional regulator |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.54641044538134 6.73811579234491 3.56292908025953 4.37951844399964 -3.21079506240045 Max fold change at or above threshold 2 6.73811579234491 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779481_at SPBC3D6.13c.S1 --- 6.73522166455094 --- --- --- --- 0.373211771249771 1.17929315567017 2.51366400718689 0.502396404743195 0.998778998851776 0.981445014476776 0.953857004642487 0.995850026607513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3D6.13c /DEF=protein disulfide isomerase oxidoreductase family --- --- --- --- --- --- SPBC3D6.13c // |||protein disulfide isomerase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.134678052839 3.15984984000123 4.4982573937094 6.73522166455094 1.34614297684348 Max fold change at or above threshold 1 6.73522166455094 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776325_at SPBP8B7.29.S1 --- 6.72611577885587 --- --- --- --- 5.86163520812988 4.0303750038147 2.02543306350708 2.51338744163513 0.274170011281967 0.525390625 0.665526986122131 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.29 /DEF=para-aminobenzoate synthase (predicted) --- --- --- --- --- --- SPBP8B7.29 // |||para-aminobenzoate synthase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.88979737491395 -1.45436471856389 -6.72611577885587 -2.89401576074814 -2.33216539202427 Max fold change at or above threshold 3 6.72611577885587 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770490_at SPBC56F2.04.S1 --- 6.7252724360766 --- --- --- --- 5.66504049301147 9.42128276824951 6.23757791519165 1.65856838226318 0.366210997104645 0.0805663987994194 0.0676269978284836 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC56F2.04 /DEF=snoRNA binding --- --- --- --- --- --- SPBC56F2.04 // |||snoRNA binding|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.44387884541962 1.66305656241501 -6.7252724360766 1.1010650184913 -3.41562069649567 Max fold change at or above threshold 3 6.7252724360766 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775011_at SPAC57A10.03.S1 --- 6.72510773292525 --- --- --- --- 5.79618978500366 2.07203936576843 1.57600808143616 0.861873149871826 0.5 0.753906011581421 0.753906011581421 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC57A10.03 /GEN=cyp1 /DEF=cyclophilin --- --- --- --- --- --- AF337536 // Schizosaccharomyces pombe cyclophilin Cyp2 (cyp2) mRNA, complete cds. // gb // 11 // --- /// SPAC57A10.03 // |cyp1||cyclophilin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.8048271353251 -2.79733574600987 -6.03719591896081 -3.67776653767017 -6.72510773292525 Max fold change at or above threshold 1 6.72510773292525 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774698_at SPBC83.14c.S1 --- 6.72363539016809 --- --- --- --- 6.20817279815674 1.6184196472168 8.12446594238281 0.923335731029511 0.366210997104645 0.601073980331421 0.194580003619194 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC83.14c /GEN=rfc5 /DEF=replication factor C complex (predicted) --- --- --- --- --- --- SPBC83.14c // |rfc5||DNA replication factor C complex subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.55173033710317 -3.83594749905129 -5.48482298156434 1.30867264918835 -6.72363539016809 Max fold change at or above threshold 2 6.72363539016809 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779661_at SPAC9E9.06c.S1 --- 6.72228041966683 --- --- --- --- 10.233907699585 2.07618474960327 11.3809661865234 4.27132320404053 0.219482004642487 0.725830018520355 0.149657994508743 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9E9.06c /DEF=threonine synthase (predicted) --- --- --- --- --- --- Z46263 // S. pombe (fission yeast) mRNA for threonine synthase. // gb // 11 // --- /// SPAC9E9.06c // |||threonine synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- D89190 // gb // 8 // Cross Hyb Matching Probes No No -1.66072546153832 -4.92918932264603 -6.72228041966683 1.11208411494516 -2.39595722700264 Max fold change at or above threshold 3 6.72228041966683 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776433_at SPACUNK4.15.S1 --- 6.72006280932375 --- --- --- --- 1.14120256900787 1.655757188797 7.66895294189453 4.85944128036499 0.533936023712158 0.567627012729645 0.0461426004767418 0.171387001872063 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPACUNK4.15 /DEF=hypothetical protein --- --- --- --- --- --- SPACUNK4.15 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.62591703566065 1.45088806646874 3.39788664091186 6.72006280932375 4.25817590350295 Max fold change at or above threshold 2 6.72006280932375 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1771779_at SPAC22E12.01.S1 --- 6.71946360974108 --- --- --- --- 1.32729625701904 5.03292751312256 5.21917724609375 0.862056016921997 0.466064006090164 0.398925989866257 0.398925989866257 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22E12.01 /DEF=triose phosphate transporter (predicted) --- --- --- --- --- --- SPAC22E12.01 // ||SPAC890.09|triose phosphate transporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.71946360974108 3.79186446620888 -6.23367328100333 3.93218711986383 -1.53968678480803 Max fold change at or above threshold 2 6.71946360974108 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772659_at SPBC1685.08.S1 --- 6.71914139397173 --- --- --- --- 1.30056893825531 7.01572179794312 1.61203503608704 6.44103717803955 0.780517995357513 0.5 0.567627012729645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1685.08 /DEF=zinc finger protein --- --- --- --- --- --- SPBC1685.08 // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 6.71914139397173 5.39434826680897 4.26649402935647 1.23948449687685 4.95247655743654 Max fold change at or above threshold 2 6.71914139397173 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771979_at SPAC22E12.17c.S1 --- 6.71894961272393 --- --- --- --- 0.440698385238647 2.96103024482727 1.06578469276428 0.306656837463379 0.981445014476776 0.725830018520355 0.888427972793579 0.991943001747131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22E12.17c /DEF=GCS1GLO3SPS18 family --- --- --- --- --- --- SPAC22E12.17c // |glo3||GTPase activating protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.25262144064243 6.71894961272393 -2.09716870431044 2.41839935988678 -1.43710601362761 Max fold change at or above threshold 1 6.71894961272393 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774464_at SPAC6B12.08.S1 --- 6.71444398040464 --- --- --- --- 1.13090682029724 2.06890869140625 5.12500858306885 0.708232522010803 0.633789002895355 0.633789002895355 0.466064006090164 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6B12.08 /DEF=zinc finger protein --- --- --- --- --- --- SPAC6B12.08 // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.79587896108397 1.82942454168105 6.71444398040464 4.531769099882 -1.59680159432158 Max fold change at or above threshold 1 6.71444398040464 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774244_at SPAC589.10c.S1 --- 6.71208058111862 --- --- --- --- 0.959223508834839 5.8624382019043 6.04383182525635 6.43838548660278 0.904784977436066 0.696289002895355 0.466064006090164 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC589.10c /DEF=ubiquitin family protein --- --- --- --- --- --- SPAC589.10c // |||ubiquitin family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.80447558293853 6.111649837508 4.11267015056142 6.30075448484133 6.71208058111862 Max fold change at or above threshold 3 6.71208058111862 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778037_at SPBC29A10.09c.S1 --- 6.70948262523984 --- --- --- --- 0.720394253730774 4.83347272872925 2.58335304260254 1.39343190193176 0.780517995357513 0.466064006090164 0.780517995357513 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A10.09c /DEF=CAF1 family ribonuclease --- --- --- --- --- --- SPBC29A10.09c // |||CAF1 family ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 4.0432532613615 6.70948262523984 -3.7798907115788 3.58602671970783 1.93426293271423 Max fold change at or above threshold 2 6.70948262523984 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770119_at SPAC11D3.16c.S1 --- 6.70867757697232 --- --- --- --- 12.1752529144287 11.752028465271 12.9111194610596 4.4660177230835 0.018554700538516 0.149657994508743 0.0561522990465164 0.194580003619194 P A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11D3.16c /DEF=sequence orphan --- --- --- --- --- --- SPAC11D3.16c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.70867757697232 -1.03601288495926 -2.3912730473954 1.06043952859154 -2.7261989694977 Max fold change at or above threshold 4 6.70867757697232 Max fold change at or above threshold PAAAMA No 4 0 PAMA 2 1 1 No No x = 1
1773087_at SPBC27B12.02.S1 --- 6.70531637245704 --- --- --- --- 0.451392829418182 0.878852427005768 0.278217792510986 3.02673172950745 0.780517995357513 0.366210997104645 0.780517995357513 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC27B12.02 /DEF=dubious --- --- --- --- --- --- SPBC27B12.02 // ||SPBC30B4.10|dubious|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 3.62556623001235 1.94697914926685 3.85121525290452 -1.62244414832081 6.70531637245704 Max fold change at or above threshold 1 6.70531637245704 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771715_at SPBC21C3.14c.S1 --- 6.70530299867425 --- --- --- --- 5.2267861366272 4.43069410324097 4.61217737197876 0.779500365257263 0.028564453125 0.398925989866257 0.0805663987994194 0.24609400331974 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21C3.14c /DEF=serine-rich protein --- --- --- --- --- --- SPBC21C3.14c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.53955431520135 -1.17967659577399 -1.01901547288283 -1.1332578335739 -6.70530299867425 Max fold change at or above threshold 3 6.70530299867425 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1778293_at YKR075C.S1 Protein of unknown function; similar to YOR062Cp and Reg1p; expression regulated by glucose and Rgt1p 6.70518273504737 382.121963500977 390.029266357422 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 359.344451904297 436.087219238281 328.156707763672 420.714080810547 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR075C /GEN=SIS2 /DB_XREF=GI:6322928 /SEG=NC_001143:-579469,580392 /DEF=Protein of unknown function; similar to YOR062Cp and Reg1p; expression regulated by glucose and Rgt1p /NOTE=Ykr075cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001783 // YKR075C SGDID:S0001783, Chr XI from 580392-579469, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018477 // cdna:Genscan chromosome:SGD1:XI:579469:580335:-1 // ensembl // 11 // --- /// GENEFINDER00000023105 // cdna:GeneFinder chromosome:SGD1:XI:579469:580392:-1 // ensembl // 11 // --- /// YKR075C // cdna:known chromosome:SGD1:XI:579469:580392:-1 gene:YKR075C // ensembl // 11 // --- YKR075W-A // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene 6.70518273504737 1.21356324531323 -1.10557536775994 -1.0950391791567 1.17078218010889 Max fold change at or above threshold 4 6.70518273504737 Max fold change at or above threshold -0.52524762144008 0.982691107875722 -1.13806377211353 0.680620285677888 386.075614929199 50.8924970504637 0.131820024581963 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777584_at SPAC22F8.02c.S1 --- 6.6986884786447 --- --- --- --- 1.08291900157928 4.64552068710327 2.76093888282776 7.25413703918457 0.870360970497131 0.5 0.466064006090164 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F8.02c /GEN=pvg5 /DEF=involved in cell wall biosynthesis --- --- --- --- --- --- SPAC22F8.02c // |pvg5||PvGal biosynthesis protein Pvg5|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.55854996009342 4.28981362440629 -2.88712915844773 2.54953406376776 6.6986884786447 Max fold change at or above threshold 3 6.6986884786447 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775511_at SPCC1442.13c.S1 --- 6.69411364865421 --- --- --- --- 3.75327301025391 6.74157333374023 0.560682594776154 0.73865669965744 0.5 0.219482004642487 0.601073980331421 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1442.13c /DEF=hypothetical protein --- --- --- --- --- --- SPCC1442.13c // |||hypothetical protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.76870531803093 1.79618517366638 1.7084114664325 -6.69411364865421 -5.08121433406686 Max fold change at or above threshold 2 6.69411364865421 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771033_at SPBC106.01.S1 --- 6.69390524771361 --- --- --- --- 6.32906198501587 18.1692390441895 21.0342998504639 5.50507259368896 0.5 0.149657994508743 0.149657994508743 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC106.01 /GEN=mph1 /DEF=Mps1-like family (PMID 9601094) --- --- --- --- --- --- AF020705 // Schizosaccharomyces pombe protein kinase homolog (mph1) mRNA, complete cds. // gb // 11 // --- /// SPBC106.01 // |mph1|SPBC1271.16c, SPBC243.01|Mps1-like family |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.69390524771361 2.87076332752078 1.93413277550939 3.32344664979784 -1.14967820629133 Max fold change at or above threshold 4 6.69390524771361 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777591_at SPAC1834.10c.S1 --- 6.69103976023057 --- --- --- --- 0.577965319156647 3.86718893051147 0.692951381206512 0.872107267379761 0.828612983226776 0.753906011581421 0.919434010982513 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1834.10c /DEF=sequence orphan --- --- --- --- --- --- SPAC1834.10c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.29229190675064 6.69103976023057 -2.18022185915104 1.19894976089162 1.50892664053324 Max fold change at or above threshold 1 6.69103976023057 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779522_at SPBC530.13.S1 --- 6.68878750126668 --- --- --- --- 3.34417128562927 0.780317187309265 5.85811710357666 2.5843620300293 0.725830018520355 0.753906011581421 0.398925989866257 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC530.13 /DEF=cyclin --- --- --- --- --- --- SPBC530.13 // |||cyclin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.04893704196872 -4.28565632029821 -6.68878750126668 1.75173955016911 -1.29400263847374 Max fold change at or above threshold 3 6.68878750126668 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775342_at YJR070C.S1 Protein with a possible role in microtubule function; complements S. pombe mmd1 mutation affecting mitochondrial distribution although not required for this process in S. cerevisiae; binds to Hyp2p (eIF5A); contains HEAT-like repeats 6.68682225624264 532.10009765625 520.138687133789 LIA1 226 // microtubule cytoskeleton organization and biogenesis // inferred from genetic interaction /// 226 // microtubule cytoskeleton organization and biogenesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 5515 // protein binding // inferred from physical interaction 496.061553955078 438.940002441406 625.260192871094 544.2158203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR070C /GEN=LIA1 /DB_XREF=GI:6322531 /SEG=NC_001142:-569535,570512 /DEF=Protein that binds to the C-terminal domain of Hyp2p (eIF5A); has four to five HEAT-like repeats /NOTE=Lia1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 14675757]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003831 // LIA1 SGDID:S0003831, Chr X from 570512-569535, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024189 // cdna:Genscan chromosome:SGD1:X:569535:570512:-1 // ensembl // 11 // --- /// GENEFINDER00000024344 // cdna:GeneFinder chromosome:SGD1:X:569535:570512:-1 // ensembl // 11 // --- /// YJR070C // cdna:known chromosome:SGD1:X:569535:570512:-1 gene:YJR070C // ensembl // 11 // --- --- No cerevisiae_gene 6.68682225624264 -1.13013521482653 -1.20177620980755 1.26044880496366 1.0970731675807 Max fold change at or above threshold 4 6.68682225624264 Max fold change at or above threshold -0.381119706016813 -1.10539497163892 1.25706021100653 0.229454466649201 526.11939239502 78.8671852056251 0.149903589081944 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770937_at SPCC970.08.S1 --- 6.68601377767483 --- --- --- --- 0.890093386173248 2.91791820526123 2.42331337928772 0.504457771778107 0.888427972793579 0.567627012729645 0.696289002895355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC970.08 /DEF=inositol polyphosphate kinase (predicted) --- --- --- --- --- --- SPCC970.08 // |||inositol polyphosphate kinase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 6.68601377767483 3.27821580363174 -1.00578112584151 2.72253835039287 -1.76445569078232 Max fold change at or above threshold 1 6.68601377767483 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774466_at SPAC30D11.11.S1 --- 6.68503315331754 --- --- --- --- 1.14272081851959 0.486909508705139 5.19543790817261 4.17585182189941 0.828612983226776 0.84521484375 0.5 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30D11.11 /DEF=conserved protein (broad species distribution) --- --- --- --- --- --- SPAC30D11.11 // |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.68503315331754 -2.34688540291292 2.07441791467975 4.54655049945039 3.65430624368013 Max fold change at or above threshold 2 6.68503315331754 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776584_at SPBC4F6.17c.S1 --- 6.67962927599027 --- --- --- --- 0.27263942360878 0.414366960525513 1.82113027572632 0.425805062055588 0.953857004642487 0.919434010982513 0.753906011581421 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4F6.17c /DEF=AAA family ATPase --- --- --- --- --- --- SPBC4F6.17c // |||AAA family ATPase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.19784187733705 1.51983508122473 -1.12429702716228 6.67962927599027 1.56178830053056 Max fold change at or above threshold 0 6.67962927599027 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775550_at SPBC1105.04c.S1 --- 6.67536151828766 --- --- --- --- 1.03631818294525 1.32101929187775 6.91779851913452 0.739501059055328 0.696289002895355 0.753906011581421 0.398925989866257 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1105.04c /GEN=cbp1 /DEF=ARS binding protein --- --- --- --- --- --- SPBC1105.04c // |cbp1|abp1|ARS binding protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.16227926739165 1.27472364532229 -2.71682868667963 6.67536151828766 -1.40137484626336 Max fold change at or above threshold 1 6.67536151828766 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774968_at SPAPB18E9.01.S1 --- 6.67531841215451 --- --- --- --- 7.46152687072754 1.7921736240387 2.25613045692444 1.90088045597076 0.432372987270355 0.828612983226776 0.805419981479645 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB18E9.01 /DEF=tRNA (guanine) methyltransferase activity --- --- --- --- --- --- SPAPB18E9.01 // |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -4.54612515679281 -4.16339509221927 -6.67531841215451 -3.30722314741458 -3.92530042975112 Max fold change at or above threshold 1 6.67531841215451 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770602_at SPAC2E1P5.03.S1 --- 6.6743116807457 --- --- --- --- 9.5600118637085 15.6981630325317 12.1310348510742 4.38504600524902 0.274170011281967 0.171387001872063 0.24609400331974 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2E1P5.03 /DEF=DNAJ domain protein --- --- --- --- --- --- SPAC2E1P5.03 // |||DNAJ domain protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.56918265811784 1.64206522505738 -6.6743116807457 1.26893512518805 -2.18013946769655 Max fold change at or above threshold 4 6.6743116807457 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770370_at SPAC6F12.10c.S1 --- 6.6742417295154 --- --- --- --- 0.945703446865082 3.1349503993988 1.7032128572464 6.31185340881348 0.753906011581421 0.533936023712158 0.601073980331421 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F12.10c /GEN=ade3 /DEF=phosphoribosylformylglycinamidine synthase (predicted) --- --- --- --- --- --- SPAC6F12.10c // |ade3|min11|phosphoribosylformylglycinamidine synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.74420145729264 3.3149402276061 1.25167054060781 1.80100100395361 6.6742417295154 Max fold change at or above threshold 2 6.6742417295154 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772293_at SPCC5E4.07.S1 --- 6.66864543702745 --- --- --- --- 11.6452980041504 11.6150798797607 3.05391335487366 1.74627637863159 0.219482004642487 0.219482004642487 0.601073980331421 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC5E4.07 /GEN=rpl2802 /DEF=60S ribosomal protein L27a.2L28A --- --- --- --- --- --- SPCC5E4.07 // |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.23715431892317 -1.00260162863299 -1.62618986327118 -3.81323785285721 -6.66864543702745 Max fold change at or above threshold 3 6.66864543702745 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778721_at SPCC1322.10.S1 --- 6.66635717014497 --- --- --- --- 1.93715667724609 4.25612783432007 12.9137783050537 1.88143503665924 0.5 0.533936023712158 0.303710997104645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1322.10 /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPCC1322.10 // |||glycoprotein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.73435094428993 2.1971004639494 -1.09048992917071 6.66635717014497 -1.02961656368736 Max fold change at or above threshold 2 6.66635717014497 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771089_at SPBPB2B2.01.S1 --- 6.65959022647696 --- --- --- --- 1.98198103904724 13.1991815567017 4.73383474349976 0.977894008159637 0.466064006090164 0.129638999700546 0.274170011281967 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB2B2.01 /DEF=amino acid permease family --- --- --- --- --- --- SPBPB2B2.01 // |||amino acid permease family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.85030791052093 6.65959022647696 2.05773537955049 2.38843593870876 -2.02678513469702 Max fold change at or above threshold 2 6.65959022647696 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776082_at SPBPB21E7.05.S1 --- 6.65954118061534 --- --- --- --- 0.237197756767273 0.829260230064392 1.57962822914124 0.0896785035729408 0.850341975688934 0.870360970497131 0.567627012729645 0.979736328125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB21E7.05 /DEF=sequence orphan --- --- --- --- --- --- SPBPB21E7.05 // ||SPAPB21E7.05|sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.86567694881641 3.4960711322326 2.5370866522026 6.65954118061534 -2.37197756767273 Max fold change at or above threshold 0 6.65954118061534 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773808_at SPCC645.02.S1 --- 6.65609958006905 --- --- --- --- 1.838623046875 11.6781358718872 12.23805809021 5.10581874847412 0.334473013877869 0.0461426004767418 0.129638999700546 0.149657994508743 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC645.02 /DEF=hypothetical protein --- --- --- --- --- --- SPCC645.02 // |||hypothetical protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.35758847525448 6.35156613082592 2.03363247016498 6.65609958006905 2.77697963002921 Max fold change at or above threshold 3 6.65609958006905 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1773756_at SPAC13F5.05.S1 --- 6.65474142169791 --- --- --- --- 0.374880939722061 0.250545561313629 2.28127670288086 2.49473571777344 0.7744140625 0.98046875 0.601073980331421 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13F5.05 /DEF=protein disulfide isomerase --- --- --- --- --- --- SPAC13F5.05 // |||thioredoxin family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.1359707675947 -1.49625855575542 1.19361165989091 6.08533659932727 6.65474142169791 Max fold change at or above threshold 0 6.65474142169791 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774817_at YOR386W.S1 DNA photolyase involved in photoreactivation, repairs pyrimidine dimers in the presence of visible light; induced by DNA damage; regulated by transcriptional repressor Rph1p 6.64761454055734 6.9808050096035 3.37221613526344 PHR1 719 // photoreactive repair // traceable author statement 5634 // nucleus // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 3904 // deoxyribodipyrimidine photo-lyase activity // traceable author statement /// 3904 // deoxyribodipyrimidine photo-lyase activity // inferred from direct assay 5.86253213882446 12.9736661911011 0.987943828105927 0.881900131702423 0.303710997104645 0.533936023712158 0.94140625 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR386W /GEN=PHR1 /DB_XREF=GI:6324962 /SEG=NC_001147:+1066835,1068532 /DEF=photolyase /NOTE=Phr1p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 10915863]; go_function: deoxyribodipyrimidine photo-lyase activity [goid GO:0003904] [evidence TAS] [pmid 10915863]; go_process: photoreactive repair [goid GO:0000719] [evidence TAS] [pmid 10915863] --- --- --- --- --- --- S0005913 // PHR1 SGDID:S0005913, Chr XV from 1066835-1068532, Verified ORF // sgd // 11 // --- /// GENSCAN00000017830 // cdna:Genscan chromosome:SGD1:XV:1066835:1068532:1 // ensembl // 11 // --- /// YOR386W // cdna:known chromosome:SGD1:XV:1066835:1068532:1 gene:YOR386W // ensembl // 11 // --- --- No cerevisiae_gene 1.19445975601851 2.212979969045 -1.23430873668547 -5.93407435933279 -6.64761454055734 Max fold change at or above threshold 2 6.64761454055734 Max fold change at or above threshold 0.120488220253371 1.3694400432251 -0.735651730442609 -0.754276533035863 5.17651057243347 5.69368163085468 1.09990727367105 AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777185_at SPCC645.12c.S1 --- 6.6462036968621 --- --- --- --- 1.28001701831818 5.81515789031982 1.75019764900208 0.192593708634377 0.665526986122131 0.334473013877869 0.466064006090164 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC645.12c /DEF=sequence orphan --- --- --- --- --- --- SPCC645.12c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.59079012449848 4.54303169965693 -1.4383878519978 1.36732373394666 -6.6462036968621 Max fold change at or above threshold 1 6.6462036968621 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770878_at YOR144C.S1 Protein required for S phase progression and telomere homeostasis, forms an alternative replication factor C complex important for DNA replication and genome integrity; mutants are sensitive to DNA damage 6.64236948103812 33.0478591918945 238.520317077637 ELG1 335 // negative regulation of DNA transposition // inferred from mutant phenotype /// 723 // telomere maintenance // traceable author statement /// 6260 // DNA replication // traceable author statement /// 45910 // negative regulation of DNA recombination // non-traceable author statement 5634 // nucleus // inferred from direct assay /// 5663 // DNA replication factor C complex // traceable author statement /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 218.073715209961 32.8307113647461 33.265007019043 258.966918945313 0.000732421991415322 0.00415039015933871 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR144C /GEN=ELG1 /DB_XREF=GI:6324718 /SEG=NC_001147:-602717,605092 /DEF=Protein required for S phase progression and telomere homeostasis, forms an alternative replication factor C complex important for DNA replication and genome integrity; mutants are sensitive to DNA damage /NOTE=Elg1p; go_component: DNA replication factor C complex [goid GO:0005663] [evidence TAS] [pmid 12912927]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA replication [goid GO:0006260] [evidence TAS] [pmid 12912927]; go_process: negative regulation of DNA recombination [goid GO:0045910] [evidence NAS] [pmid 11779788]; go_process: negative regulation of DNA transposition [goid GO:0000335] [evidence IMP] [pmid 11779788]; go_process: telomere maintenance [goid GO:0000723] [evidence TAS] [pmid 13678589] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 7.0 --- S0005670 // ELG1 SGDID:S0005670, Chr XV from 605092-602717, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017570 // cdna:Genscan chromosome:SGD1:XV:602717:605092:-1 // ensembl // 11 // --- /// YOR144C // cdna:known chromosome:SGD1:XV:602717:605092:-1 gene:YOR144C // ensembl // 11 // --- --- No cerevisiae_gene -1.00955082526559 -6.64236948103812 -1.49727363730319 -6.55564915663844 1.18752009473485 Max fold change at or above threshold 4 6.64236948103812 Max fold change at or above threshold 0.6868994309036 -0.859386759017737 -0.855761545872612 1.02824887398675 135.784088134766 119.798653737339 0.882273139533393 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776800_at SPAC2C4.04c.S1 --- 6.64211982868852 --- --- --- --- 0.197458028793335 1.31153988838196 0.473188042640686 0.444486737251282 0.989257991313934 0.780517995357513 0.995850026607513 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2C4.04c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC2C4.04c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.20552337059088 6.64211982868852 3.03191926095057 2.39639808789916 2.25104413311294 Max fold change at or above threshold 0 6.64211982868852 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771398_at SPCC584.02.S1 --- 6.63658908942636 --- --- --- --- 2.42890524864197 16.1196460723877 9.582763671875 4.67605829238892 0.334473013877869 0.000244141003349796 0.0561522990465164 0.0461426004767418 A P M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC584.02 /GEN=cuf2 /DEF=involved in copper homeostasis --- --- --- --- --- --- AJ243834 // Schizosaccharomyces pombe mRNA for copper homeostasis protein (cuf2 gene). // gb // 10 // --- /// SPCC584.02 // |cuf2||Cu metalloregulatory transcription factor Cuf2|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 2.58702200437062 6.63658908942636 3.90358600831779 3.9453015621885 1.92517114243273 Max fold change at or above threshold 3 6.63658908942636 Max fold change at or above threshold APPPMP No 3 0 APMP 1 2 1 No No 1 < x = 2
1777515_at SPAC16.02c.S1 --- 6.63345270540193 --- --- --- --- 4.02849912643433 13.7862730026245 19.7261924743652 23.7410297393799 0.398925989866257 0.366210997104645 0.274170011281967 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16.02c /GEN=srp2 /DEF=SR family --- --- --- --- --- --- D89163 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0661. // gb // 11 // --- /// SPAC16.02c // |srp2||SR family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.63345270540193 3.42218592332845 6.29118096675396 4.89666048204536 5.89326917898412 Max fold change at or above threshold 4 6.63345270540193 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773100_at SPAC3G9.16c.S1 --- 6.63184344768524 --- --- --- --- 0.663184344768524 2.14966893196106 1.02765285968781 0.132846355438232 0.904784977436066 0.665526986122131 0.84521484375 0.994140982627869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G9.16c /GEN=bet5 /DEF=TRAPP (predicted) --- --- --- --- --- --- SPAC3G9.16c // |bet5|SPAC688.15|TRAPP |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.65058118063185 3.24143497794927 -6.63184344768524 1.5495734599201 -4.99211545985449 Max fold change at or above threshold 0 6.63184344768524 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773013_at SPAC6C3.03c.S1 --- 6.63166607663588 --- --- --- --- 1.32066226005554 8.75819110870361 1.79357933998108 1.99193382263184 0.725830018520355 0.0676269978284836 0.780517995357513 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6C3.03c /DEF=dubious --- --- --- --- --- --- SPAC6C3.03c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.99442656031423 6.63166607663588 -2.96331530743059 1.35809085655681 1.50828405026737 Max fold change at or above threshold 1 6.63166607663588 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779779_at SPBC18H10.05.S1 --- 6.63155574412959 --- --- --- --- 0.593529641628265 3.9360249042511 3.26062798500061 0.545129776000977 0.633789002895355 0.091064453125 0.334473013877869 0.71826171875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18H10.05 /DEF=WD repeat protein --- --- --- --- --- --- SPBC18H10.05 // |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.33913502667233 6.63155574412959 -3.53227356228775 5.49362282236745 -1.08878595108553 Max fold change at or above threshold 2 6.63155574412959 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776504_at SPBC215.14c.S1 --- 6.6255758677227 --- --- --- --- 3.56405305862427 8.59463405609131 3.97749423980713 1.58147215843201 0.696289002895355 0.303710997104645 0.366210997104645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC215.14c /DEF=involved in intracellular protein transport (predicted) --- --- --- --- --- --- SPBC215.14c // |vps20||SNF7 family class E vps |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.6255758677227 2.41147758316731 -5.44278749886902 1.11600309377618 -2.25362997357977 Max fold change at or above threshold 3 6.6255758677227 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774493_at SPCC11E10.02c.S1 --- 6.6176593783284 --- --- --- --- 3.97114682197571 0.866730928421021 2.96230316162109 0.861597836017609 0.466064006090164 0.904784977436066 0.805419981479645 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC11E10.02c /GEN=gpi8 /DEF=GPI-anchor transamidase activity --- --- --- --- --- --- AJ250428 // Schizosaccharomyces pombe mRNA for GPI8p transamidase (GPI8 gene). // gb // 11 // --- /// SPCC11E10.02c // |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.78384644193994 -4.58175275827551 -6.6176593783284 -1.34056057240358 -4.60904920598541 Max fold change at or above threshold 2 6.6176593783284 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771481_at SPBC1703.12.S1 --- 6.61749288954705 --- --- --- --- 1.98008441925049 0.936129748821259 0.299219727516174 1.52881908416748 0.688720703125 0.753906011581421 0.805419981479645 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1703.12 /GEN=ubp9 /DEF=ubiquitin C-terminal hydrolase activity --- --- --- --- --- --- SPBC1703.12 // |ubp9||ubiquitin C-terminal hydrolase activity|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.22147903800103 -2.11518159928551 1.60679456756326 -6.61749288954705 -1.29517248950928 Max fold change at or above threshold 0 6.61749288954705 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778554_at SPAC212.06c.S1 --- 6.60928700120552 --- --- --- --- 0.632673025131226 4.18151760101318 3.83768320083618 1.30459547042847 0.77392578125 0.274170011281967 0.111571997404099 0.16552734375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC212.06c /DEF=pseudo-truncated C terminal of DNA helicase in rearranged telomeric region --- --- --- --- --- --- SPAC212.06c // |||pseudo-truncated C terminal of DNA helicase in rearranged telomeric region|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- SPBCPT2R1.08c // sanger // 2 // Cross Hyb Matching Probes /// SPAC212.11 // sanger // 2 // Cross Hyb Matching Probes No No 4.65897868687451 6.60928700120552 1.69180512830948 6.06582396971989 2.06203744842429 Max fold change at or above threshold 2 6.60928700120552 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771807_at SPBC19C2.07.S1 --- 6.60910279163739 --- --- --- --- 0.689219117164612 0.665629267692566 0.583879470825195 2.49906158447266 0.904784977436066 0.805419981479645 0.696289002895355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C2.07 /GEN=fba1 /DEF=fructose-bisphosphate aldolase (PMID 8286404) --- --- --- --- --- --- SPBC19C2.07 // |fba1||fructose-bisphosphate aldolase Fba1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 6.60910279163739 -1.03543992221649 2.61117384857346 -1.18041334145648 3.62593190211203 Max fold change at or above threshold 0 6.60910279163739 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776904_at SPAC890.06.S1 --- 6.60635179220528 --- --- --- --- 1.06528770923615 4.82989931106567 4.29999685287476 0.69040447473526 0.850341975688934 0.592041015625 0.366210997104645 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC890.06 /DEF=nucleoporin --- --- --- --- --- --- SPAC890.06 // |||nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.60635179220528 4.53389189529738 2.23091373245761 4.03646528125067 -1.54299073690772 Max fold change at or above threshold 2 6.60635179220528 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769651_at SPBC18H10.08c.S1 --- 6.60619073239177 --- --- --- --- 4.71906137466431 22.7996139526367 3.74244141578674 1.69726157188416 0.45751953125 0.457763671875 0.466064006090164 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18H10.08c /GEN=ubp4 /DEF=ubiquitin C-terminal hydrolase activity --- --- --- --- --- --- SPBC18H10.08c // |ubp4||ubiquitin C-terminal hydrolase activity|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.63349755346246 4.83138746087162 -6.60619073239177 -1.26095798180244 -2.78039723094986 Max fold change at or above threshold 3 6.60619073239177 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772034_at SPBC725.15.S1 --- 6.60605110679163 --- --- --- --- 4.77562284469604 1.99701642990112 0.902263700962067 0.722916424274445 0.398925989866257 0.753906011581421 0.805419981479645 0.7861328125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC725.15 /GEN=ura5 /DEF=orotate phosphoribosyltransferase (predicted) --- --- --- --- --- --- SPBC725.15 // |ura5||orotate phosphoribosyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.24336992449267 -2.39137884555737 -3.6428008431191 -5.29293469260028 -6.60605110679163 Max fold change at or above threshold 1 6.60605110679163 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770582_at SPBC646.05c.S1 --- 6.60206214319979 --- --- --- --- 5.63807392120361 0.853986799716949 1.55478751659393 2.25597023963928 0.432372987270355 0.753906011581421 0.5 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC646.05c /GEN=erg9 /DEF=squalene synthase (PMID 8474436) --- --- --- --- --- --- L06071 // Schizosaccharomyces pombe squalene synthetase (ERG9) mRNA, complete cds. // gb // 11 // --- /// SPBC646.05c // |erg9||squalene synthase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.11138632823232 -6.60206214319979 -1.72141076244785 -3.62626652261456 -2.49917920996383 Max fold change at or above threshold 1 6.60206214319979 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773175_at SPBC4F6.07c.S1 --- 6.60012805728799 --- --- --- --- 3.94573998451233 0.597827792167664 2.94030690193176 2.75510120391846 0.567627012729645 0.828612983226776 0.432372987270355 0.1884765625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4F6.07c /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPBC4F6.07c // |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 9 // --- --- No No 1.20554069084191 -6.60012805728799 -1.06502943665064 -1.34194834624916 -1.43215791089651 Max fold change at or above threshold 3 6.60012805728799 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778343_at SPBC646.12c.S1 --- 6.60011224771536 --- --- --- --- 16.7329578399658 5.34369277954102 5.92096710205078 2.65911626815796 0.149657994508743 0.334473013877869 0.366210997104645 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC646.12c /GEN=gap1 /DEF=GTPase activating protein --- --- --- --- --- --- SPBC646.12c // |gap1|src1, sar1|GTPase activating protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.60011224771536 -3.13134727805274 -4.34742796430584 -2.82605147969328 -6.29267627005915 Max fold change at or above threshold 4 6.60011224771536 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772221_at SPCPB16A4.06c.S1 --- 6.59722032112523 --- --- --- --- 2.25945162773132 0.819405555725098 4.00389719009399 2.33650350570679 0.601073980331421 0.828612983226776 0.24609400331974 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCPB16A4.06c /DEF=dubious --- --- --- --- --- --- SPCPB16A4.06c // |||dubious|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -6.59722032112523 -2.75742776204625 2.90871638787961 1.7720659034928 1.0341020259207 Max fold change at or above threshold 1 6.59722032112523 Max fold change at or above threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1773473_at SPBC887.16.S1 --- 6.59575599344915 --- --- --- --- 1.25403690338135 1.9530907869339 3.80647540092468 2.01558232307434 0.55859375 0.5 0.0461426004767418 0.665526986122131 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC887.16 /DEF=dubious --- --- --- --- --- --- SPBC887.16 // |||dubious|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.57837390385816 1.55744283255751 -6.59575599344915 3.03537750018442 1.6072751269437 Max fold change at or above threshold 1 6.59575599344915 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1774927_at YGR158C.S1 3'5' exoribonuclease, exosome subunit; nucleolar protein involved in export of mRNA and ribosomal subunits; homologous to the E. coli exonuclease RNase PH 6.59303930497555 109.389949798584 600.699523925781 MTR3 6365 // 35S primary transcript processing // traceable author statement /// 6402 // mRNA catabolism // inferred from physical interaction 176 // nuclear exosome (RNase complex) // inferred from direct assay /// 177 // cytoplasmic exosome (RNase complex) // inferred from direct assay 175 // 3'-5'-exoribonuclease activity // traceable author statement 568.925842285156 86.2918930053711 132.488006591797 632.473205566406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR158C /GEN=MTR3 /DB_XREF=GI:6321597 /SEG=NC_001139:-805272,806024 /DEF=Involved in mRNA transport /NOTE=Mtr3p; go_component: cytoplasmic exosome (RNase complex) [goid GO:0000177] [evidence IDA] [pmid 10465791]; go_component: nuclear exosome (RNase complex) [goid GO:0000176] [evidence IDA] [pmid 10465791]; go_function: 3'-5'-exoribonuclease activity [goid GO:0000175] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: mRNA catabolism [goid GO:0006402] [evidence IPI] [pmid 10465791] --- --- --- --- --- --- S0003390 // MTR3 SGDID:S0003390, Chr VII from 806026-805274, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019462 // cdna:Genscan chromosome:SGD1:VII:805274:806026:-1 // ensembl // 11 // --- /// YGR158C // cdna:known chromosome:SGD1:VII:805274:806026:-1 gene:YGR158C // ensembl // 11 // --- --- No cerevisiae_gene 1.01068168634762 -6.59303930497555 -1.21138152266756 -4.29416863398096 1.11169709399384 Max fold change at or above threshold 4 6.59303930497555 Max fold change at or above threshold 0.749236853807569 -0.941455463234601 -0.779628027691934 0.971846637118966 355.044736862183 285.465276215452 0.804026215789985 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776115_at YML014W.S1 tRNA methyltransferase, catalyzes the esterification of modified uridine nucleotides in tRNAs, creating 5-methylcarbonylmethyluridine in tRNA(Arg3) and 5-methylcarbonylmethyl-2-thiouridine in tRNA(Glu); may have a role in stress response 6.59300627577986 113.426391601563 595.065521240234 TRM9 6950 // response to stress // inferred from mutant phenotype /// 30488 // tRNA methylation // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 16431 // tRNA (uridine) methyltransferase activity // inferred from direct assay 597.152770996094 90.5736694335938 136.279113769531 592.978271484375 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML014W /GEN=TRM9 /DB_XREF=GI:6323627 /SEG=NC_001145:+243225,244064 /DEF=tRNA methyltransferase, required for methylation of wobble bases in arginine- and glutamine tRNAs, which may have a role in response to stress /NOTE=Trm9p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14645538]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14645538]; go_function: tRNA methyltransferase activity [goid GO:0008175] [evidence IDA] [pmid 14645538]; go_process: response to stress [goid GO:0006950] [evidence IMP] [pmid 14645538]; go_process: tRNA modification [goid GO:0006400] [evidence IDA] [pmid 14645538] --- --- --- --- --- --- S0004476 // TRM9 SGDID:S0004476, Chr XIII from 243225-244064, Verified ORF // sgd // 10 // --- /// GENSCAN00000018705 // cdna:Genscan chromosome:SGD1:XIII:243225:244064:1 // ensembl // 10 // --- /// GENEFINDER00000022056 // cdna:GeneFinder chromosome:SGD1:XIII:243225:245903:1 // ensembl // 10 // --- /// YML014W // cdna:known chromosome:SGD1:XIII:243225:244064:1 gene:YML014W // ensembl // 10 // --- --- No cerevisiae_gene -1.02254762351439 -6.59300627577986 -1.52236532796301 -4.38183632457407 -1.0070398861349 Max fold change at or above threshold 4 6.59300627577986 Max fold change at or above threshold 0.871555230136997 -0.946062222123576 -0.782070038016323 0.856577030002902 354.245956420898 278.705016246662 0.786755674115636 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771185_at SPCC576.07.S1 --- 6.59064572984224 --- --- --- --- 1.18724012374878 1.39687156677246 3.79329895973206 0.180140182375908 0.805419981479645 0.753906011581421 0.533936023712158 0.981445014476776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC576.07 /GEN=ret3 /DEF=coatomer (zeta subunit) (predicted) --- --- --- --- --- --- SPCC576.07 // |ret3||coatomer zeta subunit |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.71831301506066 1.17657038271395 -1.57507061633684 3.19505623492112 -6.59064572984224 Max fold change at or above threshold 1 6.59064572984224 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776471_at YGL209W.S1 Protein containing zinc fingers, involved in repression, along with Mig1p, of SUC2 (invertase) expression by high levels of glucose; binds to Mig1p-binding sites in SUC2 promoter 6.58738206149818 291.471405029297 155.638938903809 MIG2 6006 // glucose metabolism // traceable author statement /// 6357 // regulation of transcription from RNA polymerase II promoter // traceable author statement 5634 // nucleus // traceable author statement 3704 // specific RNA polymerase II transcription factor activity // traceable author statement 142.807144165039 281.329925537109 301.612884521484 168.470733642578 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL209W /GEN=MIG2 /DB_XREF=GI:6321229 /SEG=NC_001139:+95860,97008 /DEF=Involved in repression, along with Mig1p, of SUC2 (invertase) expression by high levels of glucose; binds to Mig1p-binding sites in SUC2 promoter /NOTE=Mig2p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 9832517]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence TAS] [pmid 9832517]; go_process: glucose metabolism [goid GO:0006006] [evidence TAS] [pmid 9832517]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence TAS] [pmid 9832517] --- --- --- --- --- --- S0003177 // MIG2 SGDID:S0003177, Chr VII from 95862-97010, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021693 // cdna:GeneFinder chromosome:SGD1:VII:96057:97010:1 // ensembl // 11 // --- /// GENSCAN00000019191 // cdna:Genscan chromosome:SGD1:VII:96201:97010:1 // ensembl // 11 // --- /// YGL209W // cdna:known chromosome:SGD1:VII:95862:97010:1 gene:YGL209W // ensembl // 11 // --- --- No cerevisiae_gene 6.58738206149818 1.96999896036001 2.20465927535704 2.11202938259809 1.17970802250537 Max fold change at or above threshold 4 6.58738206149818 Max fold change at or above threshold -1.01503705730398 0.726253228064863 0.981218650273373 -0.692434821034252 223.555171966553 79.5518027844093 0.355848634968336 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775223_at SPCC1393.05.S1 --- 6.58730773400124 --- --- --- --- 1.27855849266052 0.921322822570801 1.42782187461853 0.194094240665436 0.780517995357513 0.84521484375 0.780517995357513 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1393.05 /DEF=sequence orphan --- --- --- --- --- --- SPCC1393.05 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.12579142116519 -1.38774212614522 1.72391291416224 1.11674349106032 -6.58730773400124 Max fold change at or above threshold 0 6.58730773400124 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776844_at YDL038C.S1 Hypothetical protein /// Pheromone-regulated protein, predicted to have one transmembrane segment; promoter contains Gcn4p binding elements 6.58685668790441 1350.28494262695 290.881408691406 PRM7 747 // conjugation with cellular fusion // inferred from expression pattern 16021 // integral to membrane // inferred from sequence similarity --- 261.299774169922 979.425720214844 1721.14416503906 320.463043212891 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL038C /GEN=PRM7 /DB_XREF=GI:6320166 /SEG=NC_001136:-382327,384078 /DEF=Hypothetical ORF /NOTE=Ydl038cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002196 // YDL038C SGDID:S0002196, Chr IV from 384078-382327, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023424 // cdna:GeneFinder chromosome:SGD1:IV:382327:385554:-1 // ensembl // 11 // --- /// GENSCAN00000025072 // cdna:Genscan chromosome:SGD1:IV:382327:384078:-1 // ensembl // 11 // --- /// YDL038C // cdna:known chromosome:SGD1:IV:382327:384078:-1 gene:YDL038C // ensembl // 11 // --- --- No cerevisiae_gene 2.12708404113815 3.74828383731372 1.25552589961238 6.58685668790441 1.22641913576433 Max fold change at or above threshold 4 6.58685668790441 Max fold change at or above threshold -0.818953048822678 0.232591537314042 1.31868238166833 -0.732320870159699 820.58317565918 682.924866441709 0.832243319993871 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776721_at YHR094C.S1 Low-affinity glucose transporter of the major facilitator superfamily, expression is induced by Hxk2p in the presence of glucose and repressed by Rgt1p when glucose is limiting 6.58480759604253 29.7002716064453 184.85572052002 HXT1 8645 // hexose transport // traceable author statement 5886 // plasma membrane // inferred from direct assay 5353 // fructose transporter activity // inferred from mutant phenotype /// 5354 // galactose transporter activity // traceable author statement /// 5355 // glucose transporter activity // traceable author statement /// 15578 // mannose transporter activity // traceable author statement 162.683975219727 31.114143371582 28.2863998413086 207.027465820313 0.000244141003349796 0.00195312988944352 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR094C /GEN=HXT1 /DB_XREF=GI:6321886 /SEG=NC_001140:-290915,292627 /DEF=Low-affinity glucose transporter of the major facilitator superfamily, expression is induced by Hxk2p in the presence of glucose and repressed by Rgt1p when glucose is limiting /NOTE=Hxt1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 10377429]; go_function: fructose transporter activity [goid GO:0005353] [evidence IMP] [pmid 7651133]; go_function: galactose transporter activity [goid GO:0005354] [evidence TAS] [pmid 10618490]; go_function: glucose transporter activity [goid GO:0005355] [evidence TAS] [pmid 10618490]; go_function: mannose transporter activity [goid GO:0015578] [evidence TAS] [pmid 10618490]; go_process: hexose transport [goid GO:0008645] [evidence TAS] [pmid 10618490] --- --- --- --- --- S0001136 // span:60-81,117-134,144-163,170-192,202-224,237-256,349-371,392-414,429-451,464-486,490-512 // numtm:11 S0001136 // HXT1 SGDID:S0001136, Chr VIII from 292627-290915, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016634 // cdna:Genscan chromosome:SGD1:VIII:290915:292627:-1 // ensembl // 11 // --- /// GENEFINDER00000020298 // cdna:GeneFinder chromosome:SGD1:VIII:290915:292627:-1 // ensembl // 11 // --- /// YHR094C // cdna:known chromosome:SGD1:VIII:290915:292627:-1 gene:YHR094C // ensembl // 11 // --- --- No cerevisiae_gene 6.58480759604253 -5.22861816495688 -1.4511079174761 -5.75131427585026 1.27257442253113 Max fold change at or above threshold 4 6.58480759604253 Max fold change at or above threshold 0.606210425748941 -0.833327418264266 -0.864266454727354 1.09138344724268 107.277996063232 91.3972719753921 0.851966622507752 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775908_at SPCC757.04.S1 --- 6.57736832430211 --- --- --- --- 0.880000710487366 4.55204248428345 5.78204727172852 0.591776072978973 0.870360970497131 0.466064006090164 0.219482004642487 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC757.04 /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPCC757.04 // |||transcription factor |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 6.57736832430211 5.1727713739713 -1.37300801031898 6.5705029584877 -1.48705017094977 Max fold change at or above threshold 2 6.57736832430211 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776354_s_at YMR323W.S1 Protein of unknown function, has similarity to enolases /// Protein of unknown function, has similarity to enolases /// Protein of unknown function, has similarity to enolases 6.56652548598121 375.667877197266 440.370864868164 ERR3 /// ERR2 /// ERR1 --- 5737 // cytoplasm // inferred from direct assay 4634 // phosphopyruvate hydratase activity // inferred from sequence similarity 438.529296875 227.039001464844 524.296752929688 442.212432861328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR323W /GEN=SNO4 /DB_XREF=GI:6323985 /SEG=NC_001145:+920086,921399 /DEF=Hypothetical ORF /NOTE=Ymr323wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: phosphopyruvate hydratase activity [goid GO:0004634] [evidence ISS] [pmid 10592175]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004942 // YMR323W SGDID:S0004942, Chr XIII from 920086-921399, Uncharacterized ORF // sgd // 11 // --- /// S0005920 // ERR1 SGDID:S0005920, Chr XV from 1080272-1081585, Verified ORF // sgd // 11 // --- /// S0006202 // ERR2 SGDID:S0006202, Chr XVI from 10870-9557, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018989 // cdna:Genscan chromosome:SGD1:XIII:920086:921399:1 // ensembl // 11 // --- /// GENEFINDER00000022093 // cdna:GeneFinder chromosome:SGD1:XIII:920086:921399:1 // ensembl // 11 // --- /// GENSCAN00000017836 // cdna:Genscan chromosome:SGD1:XV:1080272:1081585:1 // ensembl // 11 // --- /// GENEFINDER00000022586 // cdna:GeneFinder chromosome:SGD1:XV:1080272:1081585:1 // ensembl // 11 // --- /// GENSCAN00000016968 // cdna:Genscan chromosome:SGD1:XVI:9557:10870:-1 // ensembl // 11 // --- /// GENEFINDER00000020895 // cdna:GeneFinder chromosome:SGD1:XVI:9557:10870:-1 // ensembl // 11 // --- /// YMR323W // cdna:known chromosome:SGD1:XIII:920086:921399:1 gene:YMR323W // ensembl // 11 // --- /// YOR393W // cdna:known chromosome:SGD1:XV:1080272:1081585:1 gene:YOR393W // ensembl // 11 // --- /// YPL281C // cdna:known chromosome:SGD1:XVI:9557:10870:-1 gene:YPL281C // ensembl // 11 // --- --- No cerevisiae_gene -6.56652548598121 -1.93151526409838 2.25208702628192 1.1955797632356 1.00839883677687 Max fold change at or above threshold 4 6.56652548598121 Max fold change at or above threshold 0.24026705858501 -1.42522867090796 0.915689689734725 0.269271922588226 408.019371032715 126.983390989865 0.311219025382213 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777416_at YEL053C.S1 Non-catalytic subunit of N-terminal acetyltransferase of the NatC type, required for replication of dsRNA virus; expression is glucose-repressible 6.56532310948142 124.081771850586 610.143188476563 MAK10 6474 // N-terminal protein amino acid acetylation // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 4042 // amino-acid N-acetyltransferase activity // inferred from direct assay 641.321350097656 97.6831359863281 150.480407714844 578.965026855469 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL053C /GEN=MAK10 /DB_XREF=GI:6320782 /SEG=NC_001137:-53901,56102 /DEF=Glucose-repressible protein /NOTE=Mak10p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: amino-acid N-acetyltransferase activity [goid GO:0004042] [evidence IDA] [pmid 11274203]; go_process: N-terminal protein amino acid acetylation [goid GO:0006474] [evidence IDA] [pmid 11274203]; go_process: host-pathogen interaction [goid GO:0030383] [evidence TAS] [pmid 11274203] --- --- --- --- --- --- S0000779 // MAK10 SGDID:S0000779, Chr V from 56102-53901, reverse complement, Verified ORF // sgd // 11 // --- /// M94533 // Saccharomyces cerevisiae glucose repressible protein (MAK10p) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000016760 // cdna:Genscan chromosome:SGD1:V:53901:56102:-1 // ensembl // 11 // --- /// GENEFINDER00000019677 // cdna:GeneFinder chromosome:SGD1:V:53901:56102:-1 // ensembl // 11 // --- /// YEL053C // cdna:known chromosome:SGD1:V:53901:56102:-1 gene:YEL053C // ensembl // 11 // --- --- No cerevisiae_gene -1.62346953934551 -6.56532310948142 -1.55288163828473 -4.26182623928653 -1.10770309146455 Max fold change at or above threshold 4 6.56532310948142 Max fold change at or above threshold 0.970296557620934 -0.953384058072567 -0.76655928095186 0.749646781403493 367.112480163574 282.603156509607 0.769799916319074 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779658_at SPAC323.06c.S1 --- 6.56287445718522 --- --- --- --- 1.13880228996277 1.12368667125702 0.537791430950165 0.921630024909973 0.696289002895355 0.665526986122131 0.919434010982513 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC323.06c /GEN=uba5 /DEF=ubiquitin activating enzyme --- --- --- --- --- --- SPAC323.06c // |uba5||ubiquitin activating enzyme|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.15192925422324 -1.01345180920304 -6.56287445718522 -2.11755380324812 -1.23563931206995 Max fold change at or above threshold 0 6.56287445718522 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774785_at SPAC644.09.S1 --- 6.56280720579469 --- --- --- --- 4.771240234375 3.25846099853516 5.01195573806763 2.82246208190918 0.334473013877869 0.06494140625 0.219482004642487 0.5 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC644.09 /DEF=UPF0001 family --- --- --- --- --- --- SPAC644.09 // |||UPF0001 family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.14416358013998 -1.46426188207252 -6.56280720579469 1.05045134846876 -1.69045326240401 Max fold change at or above threshold 4 6.56280720579469 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1771694_at SPAC17G8.10c.S1 --- 6.55545334120585 --- --- --- --- 15.3689794540405 6.10537910461426 2.34445714950562 7.40528154373169 0.0805663987994194 0.334473013877869 0.274170011281967 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G8.10c /GEN=dma1 /DEF=zinc finger protein --- --- --- --- --- --- SPAC17G8.10c // |dma1||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.75629763790014 -2.5172850351627 1.4430638793865 -6.55545334120585 -2.07540785090741 Max fold change at or above threshold 3 6.55545334120585 Max fold change at or above threshold APAPAA No 4 0 AAAA 4 0 0 No No x = 1
1770078_at SPCC1672.02c.S1 --- 6.5550399425031 --- --- --- --- 2.03881669044495 13.3645248413086 4.6680006980896 2.13210535049438 0.725830018520355 0.633789002895355 0.753906011581421 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1672.02c /GEN=sap1 /DEF=switch-activating protein --- --- --- --- --- --- SPCC1672.02c // |sap1||switch-activating protein Sap1p|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.61304202566662 6.5550399425031 4.50204591823788 2.28956370622553 1.04575627641594 Max fold change at or above threshold 2 6.5550399425031 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778993_at SPAC4D7.09.S1 --- 6.55394223124381 --- --- --- --- 1.07354640960693 4.27667045593262 7.03596115112305 1.49045419692993 0.870360970497131 0.780517995357513 0.194580003619194 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4D7.09 /GEN=tif223 /DEF=translation initiation factor --- --- --- --- --- --- SPAC4D7.09 // |tif223||translation initiation factor eIF2B|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.29684283407845 3.98368474586811 -3.15264762172822 6.55394223124381 1.38834631050151 Max fold change at or above threshold 2 6.55394223124381 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773049_at SPAC1805.10.S1 --- 6.55109466590922 --- --- --- --- 1.76080119609833 2.76608085632324 11.5351753234863 5.76366996765137 0.7470703125 0.725830018520355 0.303710997104645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1805.10 /DEF=sequence orphan --- --- --- --- --- --- SPAC1805.10 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.01060222653392 1.57092172725261 4.5610840563709 6.55109466590922 3.2733223832553 Max fold change at or above threshold 3 6.55109466590922 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771386_at SPAC15A10.15.S1 --- 6.54916765592005 --- --- --- --- 3.98547458648682 15.6085195541382 11.4491949081421 2.10466742515564 0.567627012729645 0.295166015625 0.129638999700546 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15A10.15 /GEN=sgo2 /DEF=shugoshin --- --- --- --- --- --- SPAC15A10.15 // |sgo2||shugoshin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.19900808751611 3.91635154494789 -6.54916765592005 2.87273062710319 -1.89363627661605 Max fold change at or above threshold 3 6.54916765592005 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774460_at YJL181W.S1 Hypothetical protein 6.54915063559756 84.7621994018555 552.800201416016 --- --- --- --- 519.115173339844 79.2645034790039 90.259895324707 586.485229492188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL181W /GEN=MNN11 /DB_XREF=GI:6322279 /SEG=NC_001142:+85658,87493 /DEF=Hypothetical ORF /NOTE=Yjl181wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003717 // YJL181W SGDID:S0003717, Chr X from 85658-87493, Uncharacterized ORF // sgd // 10 // --- /// GENEFINDER00000024381 // cdna:GeneFinder chromosome:SGD1:X:85928:87493:1 // ensembl // 10 // --- /// GENSCAN00000024001 // cdna:Genscan chromosome:SGD1:X:86174:87493:1 // ensembl // 10 // --- /// YJL181W // cdna:known chromosome:SGD1:X:85658:87493:1 gene:YJL181W // ensembl // 10 // --- --- No cerevisiae_gene -1.74949534676134 -6.54915063559756 -1.1598182158725 -5.7513380829032 1.12977863027756 Max fold change at or above threshold 4 6.54915063559756 Max fold change at or above threshold 0.737457227572197 -0.881694286251266 -0.841218719037319 0.985455777716388 318.781200408936 271.655040374929 0.852167693786355 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769409_at SPBC646.07c.S1 --- 6.5464635077017 --- --- --- --- 1.69999086856842 11.1289281845093 9.20303821563721 6.0629711151123 0.633789002895355 0.194580003619194 0.129638999700546 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC646.07c /DEF=steroid dehydrogenase --- --- --- --- --- --- SPBC646.07c // |||steroid dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.21387137963826 6.5464635077017 2.97694599166077 5.41358097022438 3.56647275418485 Max fold change at or above threshold 3 6.5464635077017 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779984_at SPBC30D10.06.S1 --- 6.54514353211216 --- --- --- --- 4.74738931655884 1.32952785491943 1.94378018379211 5.8988094329834 0.633789002895355 0.780517995357513 0.398925989866257 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30D10.06 /GEN=lsm4 /DEF=U6 snRNA-associated protein --- --- --- --- --- --- SPBC30D10.06 // |lsm4||U6 snRNA-associated protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.73553906300638 -3.57073324864376 -6.54514353211216 -2.44234886030023 1.24253753792815 Max fold change at or above threshold 2 6.54514353211216 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771300_at SPAC513.03.S1 --- 6.54502360507555 --- --- --- --- 1.36233651638031 0.355846107006073 0.21206371486187 0.208148449659348 0.725830018520355 0.969726979732513 0.991943001747131 0.989257991313934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC513.03 /GEN=mfm2 /DEF=M-factor precursor (PMID 8196631) --- --- --- --- --- --- SPAC513.03 // |mfm2||M-factor precursor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.70820484557376 -3.82844294080491 -5.7295824589583 -6.42418490719963 -6.54502360507555 Max fold change at or above threshold 0 6.54502360507555 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773357_at SPBC543.06c.S1 --- 6.54219758211864 --- --- --- --- 1.37666368484497 9.0064058303833 2.44198083877563 0.736794471740723 0.665526986122131 0.194580003619194 0.366210997104645 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC543.06c /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPBC543.06c // |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.58826550677255 6.54219758211864 2.44584203447575 1.77383980245737 -1.8684500734547 Max fold change at or above threshold 1 6.54219758211864 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778469_at SPAC25B8.09.S1 --- 6.54076214947355 --- --- --- --- 0.530613481998444 0.76375550031662 3.47061657905579 0.475533872842789 0.805419981479645 0.665526986122131 0.432372987270355 0.86572265625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25B8.09 /DEF=trans-aconitate 3-methyltransferase (predicted) --- --- --- --- --- --- SPAC25B8.09 // |||trans-aconitate 3-methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.66364715665772 1.43938201012175 6.47584888123936 6.54076214947355 -1.11582688910547 Max fold change at or above threshold 1 6.54076214947355 Max fold change at or above threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1779993_at SPAC4F8.15.S1 --- 6.5378463627424 --- --- --- --- 2.00873255729675 13.1327848434448 0.714596688747406 8.61303424835205 0.601073980331421 0.219482004642487 0.567627012729645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F8.15 /GEN=itr1 /DEF=myo-inositol transporter --- --- --- --- --- --- SPAC4F8.15 // |itr1|SPAC7D4.01|myo-inositol transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.08498095852996 6.5378463627424 6.25605149292572 -2.81100177054808 4.28779541460861 Max fold change at or above threshold 2 6.5378463627424 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769432_at SPBC2G2.07c.S1 --- 6.53621178291117 --- --- --- --- 5.28045129776001 0.946890771389008 12.66881275177 1.55202090740204 0.274170011281967 0.665526986122131 0.219482004642487 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G2.07c /DEF=mitochondrial ribosomal protein (small subunit) (predicted) --- --- --- --- --- --- SPBC2G2.07c // |||mitochondrial ribosomal protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.30544198368455 -5.57662135624581 -6.53621178291117 2.3991912882795 -3.4023068069354 Max fold change at or above threshold 2 6.53621178291117 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778172_at SPCC24B10.03.S1 --- 6.53299961051369 --- --- --- --- 6.17158651351929 8.68033027648926 0.944678843021393 3.45850825309753 0.24609400331974 0.274170011281967 0.567627012729645 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC24B10.03 /DEF=sequence orphan --- --- --- --- --- --- SPCC24B10.03 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.72453269815463 1.40649900272392 -3.24056762709807 -6.53299961051369 -1.78446487961735 Max fold change at or above threshold 3 6.53299961051369 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769593_at SPAC31G5.01.S1 --- 6.53147208039171 --- --- --- --- 1.75702953338623 11.4759893417358 3.88530993461609 1.26247179508209 0.633789002895355 0.0805663987994194 0.432372987270355 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31G5.01 /GEN=sap49 /DEF=RNA-binding protein --- --- --- --- --- --- SPAC31G5.01 // |sap49|SPAPB1A11.05|RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.22177886770631 6.53147208039171 1.16315779760842 2.21129460876399 -1.39173765325346 Max fold change at or above threshold 2 6.53147208039171 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775361_at SPAC17C9.11c.S1 --- 6.52412105390512 --- --- --- --- 7.02611064910889 1.07694363594055 2.09940266609192 6.44448947906494 0.303710997104645 0.753906011581421 0.567627012729645 0.0537109375 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17C9.11c /DEF=zinc finger protein --- --- --- --- --- --- SPAC17C9.11c // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- L49134 // gb // 1 // Negative Strand Matching Probes No No -5.78484059008835 -6.52412105390512 -5.28970960453783 -3.3467189322895 -1.09025093018359 Max fold change at or above threshold 2 6.52412105390512 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1778927_at SPBC19G7.15.S1 --- 6.52009365772595 --- --- --- --- 5.11494159698486 7.46608304977417 4.89722442626953 4.35906362533569 0.274170011281967 0.466064006090164 0.432372987270355 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19G7.15 /GEN=nup44 /DEF=nucleoporin --- --- --- --- --- --- D89269 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1776. // gb // 10 // --- /// SPBC19G7.15 // |nup44||nucleoporin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.52009365772595 1.45966144641324 1.13982227707958 -1.04445725818638 -1.17340374828572 Max fold change at or above threshold 4 6.52009365772595 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778101_at SPAC23A1.06c.S1 --- 6.517056233699 --- --- --- --- 0.772230565547943 0.810126721858978 5.03267002105713 0.425412774085999 0.828612983226776 0.870360970497131 0.334473013877869 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23A1.06c /GEN=cmk2 /DEF=MAPK-activated protein kinase --- --- --- --- --- --- SPAC23A1.06c // |cmk2|mkp2|MAPK-activated protein kinase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.51908203218014 1.04907362904516 1.61738898611202 6.517056233699 -1.81525006438061 Max fold change at or above threshold 1 6.517056233699 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771839_at SPBC17G9.05.S1 --- 6.51491483857883 --- --- --- --- 0.548996090888977 3.57666277885437 0.820949554443359 0.868122279644012 0.981445014476776 0.725830018520355 0.850341975688934 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17G9.05 /GEN=cyp6 /DEF=cyclophilin --- --- --- --- --- --- SPBC17G9.05 // |cyp6||cyclophilin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.55856585602309 6.51491483857883 -1.8719439568722 1.4953650273065 1.58129045734785 Max fold change at or above threshold 1 6.51491483857883 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778987_at SPCC1795.12c.S1 --- 6.51141633283865 --- --- --- --- 1.35456168651581 1.63427758216858 5.77815294265747 1.67599141597748 0.432372987270355 0.525390625 0.149657994508743 0.2392578125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1795.12c /DEF=dubious --- --- --- --- --- --- SPCC1795.12c // |||dubious|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 6.51141633283865 1.20649919338281 1.79204228643654 4.26569937727974 1.23729427213348 Max fold change at or above threshold 1 6.51141633283865 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771927_at SPAC140.01.S1 --- 6.51039980687605 --- --- --- --- 1.10021901130676 4.03651428222656 3.34184098243713 7.16286563873291 0.665526986122131 0.35791015625 0.466064006090164 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC140.01 /GEN=sdh2 /DEF=succinate dehydrogenase (ubiquinone) --- --- --- --- --- --- SPAC140.01 // |sdh2||succinate dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.38884527178967 3.66882797038044 -1.69795739499032 3.03743250034185 6.51039980687605 Max fold change at or above threshold 3 6.51039980687605 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774533_at SPCC1682.02c.S1 --- 6.50900541157791 --- --- --- --- 1.21055769920349 4.37256383895874 7.87952661514282 5.97385168075562 0.888427972793579 0.24609400331974 0.366210997104645 0.018554700538516 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1682.02c /GEN=mcm3 /DEF=MCM complex subunit --- --- --- --- --- --- SPCC1682.02c // |mcm3||MCM complex subunit|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.01847796228398 3.61202431064273 5.14671684411477 6.50900541157791 4.93479301704183 Max fold change at or above threshold 3 6.50900541157791 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1774179_at SPAC17C9.06.S1 --- 6.50613228606868 --- --- --- --- 1.8153783082962 11.8110914230347 3.5935070514679 1.14287889003754 0.805419981479645 0.665526986122131 0.129638999700546 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17C9.06 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC17C9.06 // |||SAM complex subunit Sam50 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.62944957732861 6.50613228606868 -1.94318376338439 1.97948110046579 -1.58842579394968 Max fold change at or above threshold 2 6.50613228606868 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776301_at SPAC1486.01.S1 --- 6.50382540820952 --- --- --- --- 0.361808329820633 1.0070526599884 2.35313820838928 1.41015410423279 0.780517995357513 0.696289002895355 0.567627012729645 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1486.01 /DEF=manganese superoxide dismutase (AF069292) (predicted) --- --- --- --- --- --- SPAC1486.01 // |||manganese superoxide dismutase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.34675933564262 2.78338716106302 2.26552154140191 6.50382540820952 3.89751696687546 Max fold change at or above threshold 0 6.50382540820952 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772097_at SPBC26H8.11c.S1 --- 6.50198907693345 --- --- --- --- 4.96604347229004 4.89356374740601 3.14903259277344 1.12794697284698 0.398925989866257 0.567627012729645 0.696289002895355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC26H8.11c /DEF=hypothetical protein --- --- --- --- --- --- SPBC26H8.11c // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.50198907693345 -1.01481123545646 -1.24654237048548 -1.57700605693519 -4.40272778050509 Max fold change at or above threshold 3 6.50198907693345 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774304_at SPBC3B9.12.S1 --- 6.50099792644061 --- --- --- --- 0.831480383872986 1.21579885482788 1.72630143165588 3.99020552635193 0.466064006090164 0.65771484375 0.390625 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B9.12 /DEF=TRAPP (predicted) --- --- --- --- --- --- SPBC3B9.12 // |||TRAPP |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.89924849780565 1.46220990706331 6.50099792644061 2.07617818187709 4.79891721289418 Max fold change at or above threshold 1 6.50099792644061 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770523_at SPAC1805.04.S1 --- 6.49918046294398 --- --- --- --- 7.71040725708008 1.29968476295471 1.18636608123779 4.61416244506836 0.5 0.567627012729645 0.5 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1805.04 /GEN=nup132 /DEF=nucleoporin (PMID 11564755) --- --- --- --- --- --- SPAC1805.04 // |nup132|Nup133b|nucleoporin Nup132|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.78608773562149 -5.93252108269023 -1.06340219602844 -6.49918046294398 -1.67103073393547 Max fold change at or above threshold 2 6.49918046294398 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775032_at SPBC1703.07.S1 --- 6.49866353700616 --- --- --- --- 3.10541129112244 1.11528241634369 1.84868001937866 0.477853834629059 0.567627012729645 0.601073980331421 0.696289002895355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1703.07 /DEF=ATP citrate synthase (subunit 1) (function of complex) (predicted) --- --- --- --- --- --- D89194 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1078. // gb // 11 // --- /// SPBC1703.07 // |||ATP citrate synthase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.88879124500994 -2.78441697422535 -3.27199230701018 -1.67979923976577 -6.49866353700616 Max fold change at or above threshold 1 6.49866353700616 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771587_at SPAC18B11.04.S1 --- 6.4985882368252 --- --- --- --- 8.33372688293457 4.74197053909302 6.53722763061523 1.83438956737518 0.111571997404099 0.194580003619194 0.129638999700546 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18B11.04 /GEN=ncs1 /DEF=related to neuronal calcium sensor 1 --- --- --- --- --- --- AY225216 // Schizosaccharomyces pombe neuronal calcium sensor protein-like protein (ncs1) mRNA, complete cds. // gb // 11 // --- /// SPAC18B11.04 // |ncs1||related to neuronal calcium sensor Ncs1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.4985882368252 -1.75743961592147 -4.49607351325765 -1.27481057014229 -4.54305183105639 Max fold change at or above threshold 3 6.4985882368252 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775001_at SPAC5H10.09c.S1 --- 6.4939114341233 --- --- --- --- 8.81398963928223 11.0765151977539 13.4459896087646 1.35726976394653 0.24609400331974 0.334473013877869 0.334473013877869 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5H10.09c /DEF=3-methyl-2-oxobutanoate hydroxymethyltransferase (predicted) --- --- --- --- --- --- SPAC5H10.09c // |||3-methyl-2-oxobutanoate hydroxymethyltransferase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.7812661343638 1.25669709757634 -1.22442028864065 1.52552818406304 -6.4939114341233 Max fold change at or above threshold 3 6.4939114341233 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772525_at SPAC31A2.14.S1 --- 6.49291199144474 --- --- --- --- 0.982962489128113 6.38228893280029 1.46773386001587 2.7151734828949 0.665526986122131 0.274170011281967 0.696289002895355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31A2.14 /DEF=WD repeat protein --- --- --- --- --- --- SPAC31A2.14 // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.83117160568045 6.49291199144474 5.83322359919798 1.493173825298 2.76223509332818 Max fold change at or above threshold 2 6.49291199144474 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775343_at SPAC7D4.13c.S1 --- 6.49231559805342 --- --- --- --- 0.831190764904022 5.39635276794434 0.503248810768127 3.95109248161316 0.805419981479645 0.366210997104645 0.969726979732513 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC7D4.13c /DEF=sequence orphan --- --- --- --- --- --- SPAC7D4.13c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.43614942832473 6.49231559805342 5.73281318763115 -1.65164973492008 4.75353270084683 Max fold change at or above threshold 2 6.49231559805342 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773659_at SPAC26H5.08c.S1 --- 6.49088872407552 --- --- --- --- 0.992687225341797 1.28905296325684 6.44342231750488 3.59715461730957 0.725830018520355 0.828612983226776 0.466064006090164 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26H5.08c /GEN=bgl2 /DEF=glycosyl hydrolase family 17 --- --- --- --- --- --- SPAC26H5.08c // |bgl2||glucan 1,3-beta-glucosidase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- AB000539 // gb // 8 // Cross Hyb Matching Probes No No -2.16593087304964 1.29854895917795 1.01361239417893 6.49088872407552 3.62365357937493 Max fold change at or above threshold 2 6.49088872407552 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773947_at SPBC839.10.S1 --- 6.48719869576375 --- --- --- --- 1.43361127376556 0.786021828651428 0.556210994720459 0.399223893880844 0.870360970497131 0.969726979732513 0.969726979732513 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC839.10 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC839.10 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.46654760580517 -1.82388226574471 -6.48719869576375 -2.5774594306358 -3.59099566869475 Max fold change at or above threshold 0 6.48719869576375 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775373_at SPBC106.04.S1 --- 6.48666004996219 --- --- --- --- 1.75007367134094 8.10724830627441 0.670419275760651 3.10820341110229 0.466064006090164 0.296142578125 0.432372987270355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC106.04 /GEN=ada1 /DEF=adenosine deaminase (predicted) --- --- --- --- --- --- SPBC106.04 // |ada1||adenosine deaminase Ada1 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.48666004996219 4.63251829853681 2.58975952207125 -2.61041669685784 1.77604146728333 Max fold change at or above threshold 2 6.48666004996219 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778463_at SPCC1739.14.S1 --- 6.48609670918165 --- --- --- --- 2.35889267921448 0.840609610080719 0.363684475421906 0.486121326684952 0.850341975688934 0.932372987270355 0.969726979732513 0.989257991313934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1739.14 /GEN=npp106 /DEF=nucleoporin --- --- --- --- --- --- SPCC1739.14 // |npp106||nucleoporin Npp106|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.63168467191009 -2.80616905984214 -2.37828672909624 -6.48609670918165 -4.85247725151388 Max fold change at or above threshold 0 6.48609670918165 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777858_at SPBC337.03.S1 --- 6.47790239225764 --- --- --- --- 6.80628538131714 14.1107482910156 8.57653999328613 1.05069279670715 0.129638999700546 0.0805663987994194 0.171387001872063 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC337.03 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC337.03 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.27000928832919 2.07319374673134 1.50898396819631 1.26009115292583 -6.47790239225764 Max fold change at or above threshold 3 6.47790239225764 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773428_at SPBC28E12.04.S1 --- 6.4762616724338 --- --- --- --- 0.890449166297913 0.521159589290619 1.67723166942596 4.74223566055298 0.888427972793579 0.633789002895355 0.633789002895355 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC28E12.04 /DEF=hypothetical protein --- --- --- --- --- --- SPBC28E12.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 1.5973971398044 -1.70859211764664 6.4762616724338 1.88357935849291 5.32566691063238 Max fold change at or above threshold 1 6.4762616724338 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772863_at YMR053C.S1 Protein that interacts with Sin3p in a two-hybrid assay and is part of a large protein complex with Sin3p and Stb1p 6.47472637568697 347.874526977539 820.458984375 STB2 16575 // histone deacetylation // inferred from physical interaction 5634 // nucleus // inferred from physical interaction /// 16580 // Sin3 complex // inferred from physical interaction 16564 // transcriptional repressor activity // inferred from physical interaction 798.556518554688 371.596008300781 324.153045654297 842.361450195313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR053C /GEN=STB2 /DB_XREF=GI:6323698 /SEG=NC_001145:-380345,382897 /DEF=binds Sin3p in two-hybrid assay and is part of large protein complex with Sin3p and Stb1p /NOTE=Stb2p; go_component: Sin3 complex [goid GO:0016580] [evidence IPI] [pmid 9393435]; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 9393435]; go_function: transcriptional repressor activity [goid GO:0016564] [evidence IPI] [pmid 9393435]; go_process: histone deacetylation [goid GO:0016575] [evidence IPI] [pmid 9393435] --- --- --- --- --- --- S0004657 // STB2 SGDID:S0004657, Chr XIII from 382897-380345, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018759 // cdna:Genscan chromosome:SGD1:XIII:380345:382891:-1 // ensembl // 11 // --- /// GENEFINDER00000022052 // cdna:GeneFinder chromosome:SGD1:XIII:380345:382891:-1 // ensembl // 11 // --- /// YMR053C // cdna:known chromosome:SGD1:XIII:380345:382897:-1 gene:YMR053C // ensembl // 11 // --- --- No cerevisiae_gene -6.47472637568697 -2.1489911105512 1.23014311864899 -2.46351693825001 1.0548551425263 Max fold change at or above threshold 4 6.47472637568697 Max fold change at or above threshold 0.782109497396098 -0.77547359612147 -0.948548985413573 0.941913084138945 584.16675567627 274.117324482304 0.469244991808834 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773074_at SPCC330.04c.S1 --- 6.47163397757061 --- --- --- --- 0.383016169071198 0.279155671596527 0.910344064235687 1.30736780166626 0.822998046875 0.943848013877869 0.533936023712158 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC330.04c /DEF=B13958 domain --- --- --- --- --- --- SPCC330.04c // |||B13958 domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.43247257796324 -1.3720522562937 6.47163397757061 2.37677711216016 3.41334885374836 Max fold change at or above threshold 0 6.47163397757061 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776984_at SPAC637.12c.S1 --- 6.46868202722538 --- --- --- --- 0.890591382980347 5.76095247268677 1.8271918296814 5.72722339630127 0.780517995357513 0.030273400247097 0.753906011581421 0.24609400331974 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC637.12c /GEN=mst1 /DEF=MYST-family HAT (pers. comm. S. Forsburg) --- --- --- --- --- --- SPAC637.12c // |mst1||MYST-family HAT |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.18229533510503 6.46868202722538 2.53555739917241 2.05166124959208 6.43080935404431 Max fold change at or above threshold 2 6.46868202722538 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1777695_at SPAC3A12.06c.S1 --- 6.4662583246026 --- --- --- --- 2.42981839179993 2.22873616218567 1.617063164711 3.40784239768982 0.466064006090164 0.398925989866257 0.567627012729645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A12.06c /DEF=sodiumcalcium exchanger --- --- --- --- --- --- SPAC3A12.06c // |||sodium/calcium exchanger|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.4662583246026 -1.09022253644283 -1.60061719756997 -1.50261192316145 1.40250909664298 Max fold change at or above threshold 1 6.4662583246026 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778309_at SPAC1F7.01c.S1 --- 6.46279399341291 --- --- --- --- 3.46867752075195 0.870641350746155 3.84058666229248 0.536714851856232 0.533936023712158 0.780517995357513 0.398925989866257 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F7.01c /GEN=spt6 /DEF=involved in chromatin remodeling (predicted) --- --- --- --- --- --- SPAC1F7.01c // |spt6|SPAC694.07c|SH2 domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.27324168337379 -3.98404867604696 -5.80952812594276 1.1072192901518 -6.46279399341291 Max fold change at or above threshold 2 6.46279399341291 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774399_at SPBC106.16.S1 --- 6.45867610954912 --- --- --- --- 0.461929649114609 0.815479278564453 0.500297009944916 0.944338381290436 0.985840022563934 0.985107421875 0.888427972793579 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC106.16 /DEF=20S proteasome component (alpha 4) --- --- --- --- --- --- SPBC106.16 // |||20S proteasome component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 6.45867610954912 1.76537548548248 -1.18058804756236 1.0830588833253 2.04433377052214 Max fold change at or above threshold 0 6.45867610954912 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774285_at SPCC132.05c.S1 --- 6.45755665023873 --- --- --- --- 1.55131876468658 10.017728805542 0.394328653812408 1.04477345943451 0.466064006090164 0.334473013877869 0.696289002895355 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC132.05c /DEF=trichothecene 3-O-acetyltransferase pseudogene --- --- --- --- --- --- SPCC132.05c // ||SPCC338.19|trichothecene 3-O-acetyltransferase pseudogene|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 1.33699842585396 6.45755665023873 1.9131784494527 -3.93407567441088 -1.4848374551228 Max fold change at or above threshold 1 6.45755665023873 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772587_at SPBC12D12.04c.S1 --- 6.45382079475267 --- --- --- --- 1.78429794311523 11.5155391693115 10.4082412719727 4.57038688659668 0.601073980331421 0.194580003619194 0.219482004642487 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12D12.04c /GEN=pck2 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPBC12D12.04c // |pck2|sts6, pkc1|protein kinase C |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.60719775603269 6.45382079475267 3.54978695565727 5.8332417588291 2.56144827394531 Max fold change at or above threshold 3 6.45382079475267 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771474_at SPAC29B12.07.S1 --- 6.45322850851183 --- --- --- --- 1.29073393344879 6.56857824325562 8.32940101623535 1.91106867790222 0.888427972793579 0.753906011581421 0.466064006090164 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29B12.07 /GEN=sec16 /DEF=involved in ER to Golgi transport --- --- --- --- --- --- SPAC29B12.07 // |sec16||multidomain vesicle coat component Sec16|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.28253854351662 5.08902576513552 2.77928297317349 6.45322850851183 1.48060621044952 Max fold change at or above threshold 2 6.45322850851183 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773201_at SPAC3C7.03c.S1 --- 6.45209578053135 --- --- --- --- 9.17767715454102 2.55706214904785 1.42243349552155 1.97332906723022 0.398925989866257 0.5 0.725830018520355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3C7.03c /GEN=rhp55 /DEF=RecA family --- --- --- --- --- --- AF053410 // Schizosaccharomyces pombe recombinational DNA repair protein Rhp55p (rhp55+) mRNA, complete cds. // gb // 11 // --- /// SPAC3C7.03c // |rhp55||RecA family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.29018706490608 -3.58914903885243 -1.11363030937737 -6.45209578053135 -4.650859963981 Max fold change at or above threshold 2 6.45209578053135 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769542_at SPBC21H7.04.S1 --- 6.44960192757067 --- --- --- --- 3.91212892532349 4.57783269882202 1.38289451599121 2.52144575119019 0.567627012729645 0.696289002895355 0.904784977436066 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21H7.04 /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPBC21H7.04 // |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.44960192757067 1.17016406826201 -1.25453596569401 -2.82894239588434 -1.55154197685073 Max fold change at or above threshold 3 6.44960192757067 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771377_at SPBP26C9.02c.S1 --- 6.44819354975216 --- --- --- --- 5.59480762481689 0.867655038833618 4.28468942642212 3.00112700462341 0.432372987270355 0.932372987270355 0.432372987270355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP26C9.02c /GEN=car1 /DEF=arginase (PMID 7985419) --- --- --- --- --- --- SPBP26C9.02c // |car1||arginase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.44943090270516 -6.44819354975216 1.18951404574487 -1.30576736561482 -1.86423554091438 Max fold change at or above threshold 3 6.44819354975216 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771127_at SPAC29A4.09.S1 --- 6.43404300444913 --- --- --- --- 4.88931846618652 1.62606036663055 1.85479629039764 0.759913861751556 0.633789002895355 0.696289002895355 0.633789002895355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29A4.09 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC29A4.09 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.25664963418755 -3.00684929448095 -1.11428162201742 -2.63604067546324 -6.43404300444913 Max fold change at or above threshold 1 6.43404300444913 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771690_at SPAC25H1.07.S1 --- 6.43211750565161 --- --- --- --- 0.963870823383331 6.19973039627075 0.632929861545563 4.0539345741272 0.943848013877869 0.725830018520355 0.888427972793579 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25H1.07 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC25H1.07 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.89599240433815 6.43211750565161 6.05605380819289 -1.52287146166502 4.20588991364764 Max fold change at or above threshold 2 6.43211750565161 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775751_at SPAC664.03.S1 --- 6.42274671187141 --- --- --- --- 1.98387062549591 3.13613271713257 12.7418985366821 0.800504505634308 0.665526986122131 0.432372987270355 0.111571997404099 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC664.03 /DEF=involved in RNA elongation from Pol II promoter (regulation) (predicted) (PMID 11927560) --- --- --- --- --- --- SPAC664.03 // |||RNA polymerase II associated Paf1 complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.69862000961356 1.58081513825965 -5.67261572369561 6.42274671187141 -2.4782754019903 Max fold change at or above threshold 2 6.42274671187141 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777216_at SPBC32F12.10.S1 --- 6.42132960632924 --- --- --- --- 4.93150424957275 6.48313856124878 13.2219591140747 0.76798802614212 0.108154296875 0.24609400331974 0.0561522990465164 0.334473013877869 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32F12.10 /DEF=phosphoglucomutase (predicted) --- --- --- --- --- --- SPBC32F12.10 // |||phosphoglucomutase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.37248535454163 1.31463712351266 1.13610524888819 2.68112090042713 -6.42132960632924 Max fold change at or above threshold 3 6.42132960632924 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1771096_at SPBC16E9.12c.S1 --- 6.42016667289436 --- --- --- --- 1.16236793994904 0.72349351644516 0.345087587833405 0.18104949593544 0.805419981479645 0.932372987270355 0.888427972793579 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16E9.12c /GEN=pab2 /DEF=poly(A) binding --- --- --- --- --- --- SPBC16E9.12c // |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.38806291364561 -1.60660450097778 -3.69949082269587 -3.36832729118668 -6.42016667289436 Max fold change at or above threshold 0 6.42016667289436 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773951_at SPBC17D1.06.S1 --- 6.42005307521179 --- --- --- --- 0.192738696932793 0.364579319953918 0.499899208545685 1.23739266395569 0.976073980331421 0.976073980331421 0.951416015625 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17D1.06 /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPBC17D1.06 // |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.98947672789193 1.89157302480387 1.45811963763508 2.59366290475647 6.42005307521179 Max fold change at or above threshold 0 6.42005307521179 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777552_at SPAP32A8.03c.S1 --- 6.40895786643747 --- --- --- --- 6.08008098602295 4.08324146270752 0.948684811592102 2.74622797966003 0.219482004642487 0.303710997104645 0.466064006090164 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP32A8.03c /DEF=zinc finger protein --- --- --- --- --- --- SPAP32A8.03c // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.30483620940213 -1.48903292679423 -3.7412413869188 -6.40895786643747 -2.2139753258124 Max fold change at or above threshold 3 6.40895786643747 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775224_at SPAC1071.05.S1 --- 6.4081837886033 --- --- --- --- 1.36321616172791 4.97729110717773 8.73573970794678 0.411272704601288 0.696289002895355 0.45751953125 0.149657994508743 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1071.05 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC1071.05 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.74119368429116 3.65113856988675 -1.46070207797914 6.4081837886033 -3.3146283389983 Max fold change at or above threshold 2 6.4081837886033 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776739_at SPBC16C6.05.S1 --- 6.40510391265063 --- --- --- --- 4.26540946960449 6.74141550064087 5.27751874923706 0.665939152240753 0.274170011281967 0.0952147990465164 0.24609400331974 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16C6.05 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC16C6.05 // |||translation initiation factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -6.04872949262201 1.58048495664496 -2.88676446633679 1.23728302917807 -6.40510391265063 Max fold change at or above threshold 3 6.40510391265063 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779557_at SPBC12C2.07c.S1 --- 6.40093944185802 --- --- --- --- 2.80587434768677 17.9602317810059 12.3049440383911 7.17237234115601 0.194580003619194 0.129638999700546 0.000732421991415322 0.0461426004767418 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12C2.07c /DEF=spermidine synthase (predicted) --- --- --- --- --- --- SPBC12C2.07c // |||spermidine synthase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 6.10951057424403 6.40093944185802 4.29909123275403 4.38542233672567 2.55619869331251 Max fold change at or above threshold 4 6.40093944185802 Max fold change at or above threshold APAPPP No 3 0 AAPP 2 2 0 No No 1 < x = 2
1780026_at SPAC1565.05.S1 --- 6.39500802278789 --- --- --- --- 6.67579698562622 1.39708662033081 4.41338014602661 1.04390752315521 0.567627012729645 0.828612983226776 0.753906011581421 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1565.05 /DEF=sequence orphan --- --- --- --- --- --- SPAC1565.05 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.38556589061693 -4.77837013716836 -5.16529386725255 -1.51262677692437 -6.39500802278789 Max fold change at or above threshold 2 6.39500802278789 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776072_at SPBC1703.13c.S1 --- 6.39298593469064 --- --- --- --- 10.9912223815918 17.6098613739014 20.0933036804199 1.71926271915436 0.129638999700546 0.219482004642487 0.0676269978284836 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1703.13c /DEF=mitochondrial carrier --- --- --- --- --- --- SPBC1703.13c // |||mitochondrial carrier|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.36267639655385 1.6021749685817 -3.9668877944649 1.82812274948348 -6.39298593469064 Max fold change at or above threshold 3 6.39298593469064 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778534_at SPAC824.08.S1 --- 6.39094995429902 --- --- --- --- 2.67729091644287 2.04829859733582 10.0804786682129 0.418919086456299 0.805419981479645 0.870360970497131 0.334473013877869 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC824.08 /GEN=gda1 /DEF=nucleotide diphosphatase activity (PMID 12686557) (PMID 14612233) --- --- --- --- --- --- SPAC824.08 // |gda1|gdp1|nucleotide diphosphatase Gda1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.03614661546943 -1.30708038365362 -4.90306174688438 3.76517867606488 -6.39094995429902 Max fold change at or above threshold 2 6.39094995429902 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772210_at SPAC31A2.11c.S1 --- 6.38833449556663 --- --- --- --- 15.3633365631104 6.31475162506104 13.8603057861328 11.5821542739868 0.0676269978284836 0.533936023712158 0.0805663987994194 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31A2.11c /GEN=cuf1 /DEF=Cu metalloregulatory transcription factor (PMID 10593913) --- --- --- --- --- --- SPAC31A2.11c // |cuf1||Cu metalloregulatory transcription factor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.38833449556663 -2.4329280825771 -3.09077526059956 -1.10844138651554 -1.32646623414575 Max fold change at or above threshold 4 6.38833449556663 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780034_at SPBC2G2.13c.S1 --- 6.38452460513862 --- --- --- --- 0.863412201404572 5.51247644424438 1.2358523607254 0.406893998384476 0.725830018520355 0.601073980331421 0.696289002895355 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G2.13c /DEF=deoxycytidylate deaminase (predicted) --- --- --- --- --- --- SPBC2G2.13c // |||deoxycytidylate deaminase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.13836119212832 6.38452460513862 -1.02565908458973 1.43135846205898 -2.12195855636271 Max fold change at or above threshold 1 6.38452460513862 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774120_at SPCC1223.08c.S1 --- 6.38408977392559 --- --- --- --- 1.37798929214478 0.347513407468796 1.4600909948349 0.215847417712212 0.725830018520355 0.989257991313934 0.780517995357513 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1223.08c /GEN=dfr1 /DEF=dihydrofolate reductase (PMID 8088538) --- --- --- --- --- --- L13703 // Schizosaccharomyces pombe dihydropteridine reductase (dfr1) mRNA, complete cds. // gb // 11 // --- /// SPCC1223.08c // |dfr1||dihydrofolate reductase Dfr1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.10620225372422 -3.96528382079333 -1.99765332920418 1.05958079874651 -6.38408977392559 Max fold change at or above threshold 0 6.38408977392559 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778946_at SPBC1105.01.S1 --- 6.3832570503862 --- --- --- --- 0.234128803014755 0.489902496337891 0.788483202457428 1.49450433254242 0.976073980331421 0.904784977436066 0.725830018520355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1105.01 /DEF=HEAT repeat (ISS) (PMID 14729571) --- --- --- --- --- --- SPBC1105.01 // ||SPBPB7E8.03|HEAT repeat |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.00270695523035 2.09244864377928 -1.99021216145779 3.3677325997679 6.3832570503862 Max fold change at or above threshold 0 6.3832570503862 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773991_at SPCC18.01c.S1 --- 6.38193421327791 --- --- --- --- 3.2232837677002 9.72564315795898 0.794290721416473 8.12376022338867 0.633789002895355 0.366210997104645 0.725830018520355 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18.01c /GEN=adg3 /DEF=beta-glucosidase (predicted) --- --- --- --- --- --- D89125 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0473. // gb // 11 // --- /// SPCC18.01c // |adg3|SPCC74.07c|beta-glucosidase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -6.38193421327791 3.01730901120698 1.66768633475134 -4.0580654926348 2.52033665319667 Max fold change at or above threshold 3 6.38193421327791 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778637_at SPCC1259.15c.S1 --- 6.38042852438144 --- --- --- --- 1.25388240814209 8.00030708312988 0.457489907741547 0.973030507564545 0.665526986122131 0.366210997104645 0.932372987270355 0.71875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1259.15c /GEN=ubc11 /DEF=ubiquitin conjugating enzyme (PMID 12724408) --- --- --- --- --- --- SPCC1259.15c // |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.16563906354698 6.38042852438144 5.33494753158487 -2.74078703578846 -1.28863627439648 Max fold change at or above threshold 1 6.38042852438144 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774008_at SPBC16G5.08.S1 --- 6.37908195346414 --- --- --- --- 1.68375957012177 3.08961296081543 5.24796724319458 0.263950139284134 0.633789002895355 0.533936023712158 0.274170011281967 0.989257991313934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16G5.08 /GEN=trp4 /DEF=phosphoribosylanthranilate transferase --- --- --- --- --- --- SPBC16G5.08 // |trp4||phosphoribosylanthranilate transferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.57444729575862 1.83494901269781 1.95524637897867 3.116815094221 -6.37908195346414 Max fold change at or above threshold 2 6.37908195346414 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773918_at SPAC1002.18.S1 --- 6.37172658782443 --- --- --- --- 0.918563902378082 2.78325724601746 0.995890319347382 5.85283803939819 0.888427972793579 0.665526986122131 0.962401986122131 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1002.18 /DEF=conserved fungal protein --- --- --- --- --- --- D89119 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0438. // gb // 11 // --- /// SPAC1002.18 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.02448915365021 3.03000938618625 1.78476985025902 1.08418185906186 6.37172658782443 Max fold change at or above threshold 2 6.37172658782443 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769879_at SPBC2F12.08c.S1 --- 6.36559858349359 --- --- --- --- 0.199435859918594 1.05601131916046 1.26952862739563 0.292293280363083 0.94384765625 0.870360970497131 0.888427972793579 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2F12.08c /GEN=ceg1 /DEF=mRNA guanylyltransferase --- --- --- --- --- --- SPBC2F12.08c // |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.38616909821746 5.29499218240643 1.09802887257046 6.36559858349359 1.46560042152094 Max fold change at or above threshold 0 6.36559858349359 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770953_at SPAC3A11.08.S1 --- 6.36507437113068 --- --- --- --- 0.582749366760254 3.70924305915833 0.619182288646698 1.45072436332703 0.962401986122131 0.194580003619194 0.870360970497131 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A11.08 /GEN=pcu4 /DEF=cullin family --- --- --- --- --- --- SPAC3A11.08 // |cul4|pcu4, Cul-4|cullin 4|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.81489170868445 6.36507437113068 -1.41581870522308 1.0625190244118 2.48944820204989 Max fold change at or above threshold 1 6.36507437113068 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778757_at SPCC1322.05c.S1 --- 6.3630302549039 --- --- --- --- 3.15702629089355 3.85324192047119 4.13610506057739 0.496151387691498 0.601073980331421 0.665526986122131 0.5 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1322.05c /DEF=leukotriene A-4 hydrolase (predicted) --- --- --- --- --- --- SPCC1322.05c // |||leukotriene A-4 hydrolase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.31825453373969 1.22052892989389 1.8527827000026 1.31012689774171 -6.3630302549039 Max fold change at or above threshold 3 6.3630302549039 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774210_at SPAC3F10.15c.S1 --- 6.36050283908844 --- --- --- --- 0.636050283908844 0.297993123531342 3.788254737854 0.0730920359492302 0.533936023712158 0.822998046875 0.5 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3F10.15c /GEN=spo12 /DEF=involved in sporulation (predicted) --- --- --- --- --- --- SPAC3F10.15c // |spo12||spo12 family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.77801789553575 -2.13444617906409 -4.71898923715743 5.95590448379852 -6.36050283908844 Max fold change at or above threshold 1 6.36050283908844 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776243_at SPBC776.10c.S1 --- 6.35552051033059 --- --- --- --- 4.48230600357056 1.41381692886353 6.80808973312378 1.83485782146454 0.398925989866257 0.601073980331421 0.432372987270355 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC776.10c /DEF=Golgi transport complex (peripheral subunit) (predicted) (PMID 12006647) --- --- --- --- --- --- SPBC776.10c // |||Golgi transport complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.80336327850466 -3.17035813623592 -6.35552051033059 1.51888106874018 -2.44286284808318 Max fold change at or above threshold 2 6.35552051033059 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779829_at SPBC14C8.12.S1 --- 6.35217189788818 --- --- --- --- 0.0830691829323769 0.177673414349556 0.264367163181305 0.578382194042206 0.718505859375 0.850341975688934 0.904784977436066 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14C8.12 /GEN=rpb8 /DEF=DNA-directed RNA polymerase (I, II, and III subunit) (PMID 10335407) --- --- --- --- --- --- D86555 // Schizosaccharomyces pombe rpb8 mRNA for RNA polymerase II subunit Rpb8, complete cds. // gb // 11 // --- /// Y07643 // S.pombe mRNA for RNA polymerase subunit RPB8, 774bp. // gb // 11 // --- /// Y07644 // S.pombe mRNA for RNA polymerase subunit RPB8, 953bp. // gb // 11 // --- /// AF020780 // Schizosaccharomyces pombe RNA polymerase I, II and III subunit Rpb8 (rpb8+) mRNA, complete cds. // gb // 11 // --- /// SPBC14C8.12 // |rpb8||DNA-directed RNA polymerase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 6.35217189788818 1.77673414349556 2.8565588593483 2.64367163181305 5.78382194042206 Max fold change at or above threshold 0 6.35217189788818 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772989_at SPCC1795.05c.S1 --- 6.35185635496054 --- --- --- --- 0.749813735485077 4.76270914077759 0.75840163230896 0.522926211357117 0.665526986122131 0.601073980331421 0.870360970497131 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1795.05c /DEF=uridylate kinase --- --- --- --- --- --- SPCC1795.05c // |||uridylate kinase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.21271402764668 6.35185635496054 1.12002929779336 1.01145337357461 -1.43388057282333 Max fold change at or above threshold 1 6.35185635496054 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771567_at YDR524C.S1 ADP-ribosylation factor (ARF) GTPase activating protein (GAP) effector, involved in the secretory and endocytic pathways; contains C2C2H2 cysteine/histidine motif 6.34325104420965 842.347869873047 148.34740447998 AGE1 6888 // ER to Golgi transport // inferred from genetic interaction /// 6888 // ER to Golgi transport // inferred from sequence similarity /// 6891 // intra-Golgi transport // inferred from genetic interaction /// 6891 // intra-Golgi transport // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay 8060 // ARF GTPase activator activity // inferred from genetic interaction /// 8060 // ARF GTPase activator activity // inferred from sequence similarity /// 8060 // ARF GTPase activator activity // inferred from direct assay 144.396026611328 915.940246582031 768.755493164063 152.298782348633 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR524C /GEN=AGE1 /DB_XREF=GI:6320732 /SEG=NC_001136:-1487530,1488978 /DEF=ADP-ribosylation factor (ARF) GTPase activating protein (GAP) effector /NOTE=Age1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: ARF GTPase activator activity [goid GO:0008060] [evidence IDA] [pmid 12627398]; go_function: ARF GTPase activator activity [goid GO:0008060] [evidence IGI,ISS] [pmid 9677411]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IGI,ISS] [pmid 9677411]; go_process: intra-Golgi transport [goid GO:0006891] [evidence IGI,ISS] [pmid 9677411] --- --- --- --- --- --- S0002932 // AGE1 SGDID:S0002932, Chr IV from 1488980-1487532, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023653 // cdna:GeneFinder chromosome:SGD1:IV:1487532:1488038:-1 // ensembl // 9 // --- /// YDR524C // cdna:known chromosome:SGD1:IV:1487532:1488980:-1 gene:YDR524C // ensembl // 11 // --- --- No cerevisiae_gene 2.37899500144667 6.34325104420965 1.04277037912794 5.3239380002701 1.05472973130055 Max fold change at or above threshold 4 6.34325104420965 Max fold change at or above threshold -0.86617361194692 1.03805256531026 0.674790093637174 -0.846669047000511 495.347637176514 405.174673673495 0.817960242998219 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774712_at SPAC1B3.03c.S1 --- 6.34227877898081 --- --- --- --- 3.59344458580017 0.566585719585419 5.3442645072937 3.21411657333374 0.601073980331421 0.850341975688934 0.567627012729645 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B3.03c /GEN=wis2 /DEF=cyclophilin --- --- --- --- --- --- SPAC1B3.03c // |wis2|cyp5|cyclophilin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.19793491331146 -6.34227877898081 1.75474852406771 1.48722608062806 -1.11801936980555 Max fold change at or above threshold 3 6.34227877898081 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770045_at SPAC11D3.18c.S1 --- 6.34072667494926 --- --- --- --- 1.77136313915253 1.73181641101837 11.2317295074463 0.611165523529053 0.665526986122131 0.850341975688934 0.42333984375 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11D3.18c /DEF=membrane transporter --- --- --- --- --- --- SPAC11D3.18c // |||nicotinic acid plasma membrane transporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.06154058384453 -1.02283540442425 -4.14020635733963 6.34072667494926 -2.89833616419353 Max fold change at or above threshold 1 6.34072667494926 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775169_at SPAC589.03c.S1 --- 6.3387043655703 --- --- --- --- 0.794705331325531 0.181456387042999 5.03740215301514 0.763737320899963 0.665526986122131 0.991455078125 0.194580003619194 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC589.03c /DEF=hypothetical protein --- --- --- --- --- --- SPAC589.03c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.84218390493382 -4.37959415083698 -4.16543401357123 6.3387043655703 -1.0405479863012 Max fold change at or above threshold 1 6.3387043655703 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771381_at SPAC15A10.04c.S1 --- 6.33769702815398 --- --- --- --- 7.03705215454102 9.71222496032715 10.5115556716919 1.31161689758301 0.567627012729645 0.398925989866257 0.5 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15A10.04c /GEN=zpr1 /DEF=zinc finger protein --- --- --- --- --- --- SPAC15A10.04c // |zpr1||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.68880736953072 1.3801553188802 -6.33769702815398 1.49374417594856 -5.36517344928126 Max fold change at or above threshold 3 6.33769702815398 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771388_at YLR437C.S1 Hypothetical protein 6.32679935514005 517.732269287109 108.173107147217 --- --- 5737 // cytoplasm // inferred from direct assay --- 94.1849212646484 443.624450683594 591.840087890625 122.161293029785 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR437C /GEN=ECM30 /DB_XREF=GI:6323469 /SEG=NC_001144:-1011618,1012019 /DEF=Hypothetical ORF /NOTE=Ylr437cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004429 // YLR437C SGDID:S0004429, Chr XII from 1012019-1011618, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000024827 // cdna:GeneFinder chromosome:SGD1:XII:1011618:1012019:-1 // ensembl // 11 // --- /// YLR437C // cdna:known chromosome:SGD1:XII:1011618:1012019:-1 gene:YLR437C // ensembl // 11 // --- --- No cerevisiae_gene 6.32679935514005 4.71014303273729 1.58160862781274 6.28380933958234 1.29703663165494 Max fold change at or above threshold 4 6.32679935514005 Max fold change at or above threshold -0.895321914631583 0.534783045004626 1.14136558653298 -0.780826716906024 312.952688217163 244.34537273952 0.780774161524263 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772767_at SPAC22E12.13c.S1 --- 6.32164936946713 --- --- --- --- 1.33716356754303 8.45307922363281 4.75592470169067 0.541984677314758 0.533936023712158 0.171387001872063 0.24609400331974 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22E12.13c /GEN=rpl2403 /DEF=60S ribosomal protein L24-3 (L30) --- --- --- --- --- --- SPAC22E12.13c // |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.41665530736054 6.32164936946713 1.83448838680706 3.55672620547795 -2.46716120125011 Max fold change at or above threshold 2 6.32164936946713 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772717_at SPAC6G9.12.S1 --- 6.31975396140376 --- --- --- --- 0.85243558883667 5.38718318939209 1.58682382106781 1.52383887767792 0.665526986122131 0.398925989866257 0.696289002895355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G9.12 /DEF=BRCT domain --- --- --- --- --- --- SPAC6G9.12 // |cfr1||BRCT domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.37366847338003 6.31975396140376 2.06664911139366 1.86151756431635 1.78762935010435 Max fold change at or above threshold 1 6.31975396140376 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769431_at YDL167C.S1 Protein of unknown function, rich in asparagine residues 6.31299568986774 34.0939922332764 181.678901672363 NRP1 --- 5737 // cytoplasm // inferred from direct assay --- 183.125015258789 39.1803588867188 29.007625579834 180.232788085938 0.000244141003349796 0.0375977009534836 0.0561522990465164 0.000244141003349796 P P M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL167C /GEN=NRP1 /DB_XREF=GI:6320034 /SEG=NC_001136:-160996,163155 /DEF=Protein of unknown function, rich in asparagine residues /NOTE=Nrp1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002326 // NRP1 SGDID:S0002326, Chr IV from 163155-160996, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023686 // cdna:GeneFinder chromosome:SGD1:IV:160996:162549:-1 // ensembl // 11 // --- /// GENSCAN00000024977 // cdna:Genscan chromosome:SGD1:IV:160996:161424:-1 // ensembl // 10 // --- /// YDL167C // cdna:known chromosome:SGD1:IV:160996:163155:-1 gene:YDL167C // ensembl // 11 // --- --- No cerevisiae_gene -1.17200936843348 -4.67389836290816 -1.89161702752766 -6.31299568986774 -1.01604717545329 Max fold change at or above threshold 4 6.31299568986774 Max fold change at or above threshold 0.881865542884324 -0.805298838296254 -0.92453267251558 0.84796596792751 107.88644695282 85.3175055007659 0.790808372233042 PPPPMP Called_P_>2EXP 2 0 PPMP 0 3 1 Yes Yes 2 < x = 3
1779330_at YML061C.S1 DNA helicase involved in telomere formation and elongation; acts as a catalytic inhibitor of telomerase; also plays a role in repair and recombination of mitochondrial DNA 6.30957941579611 64.3984985351563 407.09098815918 PIF1 2 // mitochondrial genome maintenance // inferred from mutant phenotype /// 723 // telomere maintenance // inferred from mutant phenotype /// 6310 // DNA recombination // inferred from mutant phenotype /// 7001 // chromosome organization and biogenesis (sensu Eukaryota) // inferred from mutant phenotype 5634 // nucleus // inferred from curator /// 5739 // mitochondrion // inferred from direct assay 3678 // DNA helicase activity // inferred from direct assay 378.804962158203 60.0364837646484 68.7605133056641 435.377014160156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML061C /GEN=PIF1 /DB_XREF=GI:6323579 /SEG=NC_001145:-148953,151532 /DEF=involved in repair and recombination of mitochondrial DNA; also plays a role in (nuclear) chromosomal telomere formation and elongation /NOTE=Pif1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 1849081]; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 8253734]; go_function: DNA helicase activity [goid GO:0003678] [evidence IDA] [pmid 8253734]; go_process: DNA recombination [goid GO:0006310] [evidence IMP] [pmid 1849081]; go_process: chromosome organization and biogenesis (sensu Eukarya) [goid GO:0007001] [evidence IMP] [pmid 8287473]; go_process: telomere maintenance [goid GO:0000723] [evidence IMP] [pmid 10926538] --- --- --- --- --- --- S0004526 // PIF1 SGDID:S0004526, Chr XIII from 151532-148953, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018666 // cdna:Genscan chromosome:SGD1:XIII:148953:150974:-1 // ensembl // 11 // --- /// GENEFINDER00000021838 // cdna:GeneFinder chromosome:SGD1:XIII:148953:150974:-1 // ensembl // 11 // --- /// YML061C // cdna:known chromosome:SGD1:XIII:148953:151532:-1 gene:YML061C // ensembl // 11 // --- --- No cerevisiae_gene -1.83034764301479 -6.30957941579611 -1.11320639482795 -5.50904791059783 1.14934348187954 Max fold change at or above threshold 4 6.30957941579611 Max fold change at or above threshold 0.718069817864217 -0.881941877373432 -0.838152888683056 1.00202494819227 235.744743347168 199.228842728058 0.845104072732874 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777439_at SPCC1795.06.S1 --- 6.30801658851148 --- --- --- --- 2.06676721572876 13.0372018814087 8.11752319335938 2.50586628913879 0.567627012729645 0.149657994508743 0.398925989866257 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1795.06 /GEN=map2 /DEF=P-factor (PMID 8314086) --- --- --- --- --- --- SPCC1795.06 // |map2||P-factor |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.08098613294063 6.30801658851148 1.90707330437842 3.92764271253309 1.21245695696562 Max fold change at or above threshold 3 6.30801658851148 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778913_at SPAC2C4.03c.S1 --- 6.30746804449235 --- --- --- --- 0.510501801967621 1.65915048122406 3.21997380256653 0.341569423675537 0.976073980331421 0.601073980331421 0.696289002895355 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2C4.03c /GEN=smd2 /DEF=small nuclear ribonucleoprotein (snRNP) --- --- --- --- --- --- SPAC2C4.03c // |smd2|cwf9|small nuclear ribonucleoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.56158796020782 3.25003844223315 1.54669642568378 6.30746804449235 -1.49457699250199 Max fold change at or above threshold 1 6.30746804449235 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779997_at SPBC16D10.01c.S1 --- 6.30591550245862 --- --- --- --- 3.98950934410095 4.0473518371582 3.81661987304688 0.928577244281769 0.274170011281967 0.24609400331974 0.24609400331974 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16D10.01c /DEF=TPR repeat protein --- --- --- --- --- --- SPBC16D10.01c // ||SPBC418.03c|TPR repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.29619774409326 1.01449864834702 -6.30591550245862 -1.0452991067502 -4.29636776979899 Max fold change at or above threshold 3 6.30591550245862 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769678_at SPAC1142.09.S1 --- 6.30569220387454 --- --- --- --- 0.26811757683754 0.627210736274719 0.386278092861176 0.0723021179437637 0.985840022563934 0.688720703125 0.850341975688934 0.968017578125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1142.09 /DEF=dubious --- --- --- --- --- --- SPAC1142.09 // ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.43507337771117 2.33931226618076 6.30569220387454 1.44070410234698 -2.6811757683754 Max fold change at or above threshold 0 6.30569220387454 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772532_at SPAC521.03.S1 --- 6.30244439471348 --- --- --- --- 8.50047969818115 13.4057369232178 10.6941661834717 8.1313419342041 0.0561522990465164 0.24609400331974 0.24609400331974 0.129638999700546 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC521.03 /DEF=short chain dehydrogenase (predicted) --- --- --- --- --- --- SPAC521.03 // |||short chain dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -6.30244439471348 1.57705651906753 -1.19984056686261 1.25806619898874 -1.04539690581997 Max fold change at or above threshold 4 6.30244439471348 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1776682_at SPBC32F12.15.S1 --- 6.30173685356995 --- --- --- --- 1.47486746311188 3.73071885108948 9.29422664642334 6.15337514877319 0.2392578125 0.274170011281967 0.000732421991415322 0.000244141003349796 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32F12.15 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC32F12.15 // |||transcription factor TFIIH complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.12867709848421 2.52952820805871 1.76362302716155 6.30173685356995 4.17215465299503 Max fold change at or above threshold 3 6.30173685356995 Max fold change at or above threshold APAAPP No 2 0 AAPP 2 2 0 No No 1 < x = 2
1773927_at SPAC9G1.02.S1 --- 6.29846123133692 --- --- --- --- 6.29610586166382 0.999626040458679 6.60796928405762 2.99057149887085 0.432372987270355 0.725830018520355 0.149657994508743 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9G1.02 /GEN=wis4 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPAC9G1.02 // |wis4|wak1, wik1|MAP kinase kinase kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.25436756233374 -6.29846123133692 -3.02096066152355 1.04953274758175 -2.10531862021725 Max fold change at or above threshold 3 6.29846123133692 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771298_at SPBC6B1.04.S1 --- 6.29694168436328 --- --- --- --- 1.19720470905304 3.02148127555847 7.5387282371521 0.406281173229218 0.432372987270355 0.625244140625 0.601073980331421 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC6B1.04 /GEN=mde4 /DEF=no apparent orthologs --- --- --- --- --- --- SPBC6B1.04 // |mde4||mei4 dependent protein Mde4|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.39167047782404 2.52377997907174 1.71921045365369 6.29694168436328 -2.94673932227127 Max fold change at or above threshold 2 6.29694168436328 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772000_at SPAC30C2.08.S1 --- 6.29674759886971 --- --- --- --- 3.67542171478271 0.583701610565186 8.11551570892334 4.21258449554443 0.366210997104645 0.994140982627869 0.398925989866257 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30C2.08 /DEF=hypothetical protein --- --- --- --- --- --- SPAC30C2.08 // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.26550931133414 -6.29674759886971 -1.17507133130839 2.20805021537593 1.14614997201579 Max fold change at or above threshold 3 6.29674759886971 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769724_at SPBC119.07.S1 --- 6.29642023905407 --- --- --- --- 1.76545429229736 7.78521013259888 7.77180671691895 3.48170900344849 0.601073980331421 0.432372987270355 0.398925989866257 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC119.07 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPBC119.07 // |||serine/threonine protein kinase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.01172201276742 4.40974890517731 6.29642023905407 4.40215685607221 1.97213205611672 Max fold change at or above threshold 3 6.29642023905407 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774415_at SPAC9.12c.S1 --- 6.29535874275993 --- --- --- --- 1.73702216148376 3.84796071052551 1.83214199542999 0.593759059906006 0.850341975688934 0.601073980331421 0.780517995357513 0.981445014476776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9.12c /GEN=atp12 /DEF=F1 ATPase chaperone (PMID 12206899) (ISS) --- --- --- --- --- --- SPAC9.12c // |atp12||F1 ATPase chaperone |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.29535874275993 2.2152628768067 -1.36534384439846 1.05476028806966 -2.92546636974052 Max fold change at or above threshold 1 6.29535874275993 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777285_at SPBC17D11.08.S1 --- 6.29299091738537 --- --- --- --- 0.864746987819672 2.0497932434082 2.73350548744202 5.44184494018555 0.696289002895355 0.828612983226776 0.533936023712158 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17D11.08 /DEF=WD repeat protein --- --- --- --- --- --- SPBC17D11.08 // |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.2427151635227 2.37039651167383 -1.58959284619797 3.16104655574937 6.29299091738537 Max fold change at or above threshold 2 6.29299091738537 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772715_at SPAC5H10.02c.S1 --- 6.2924192160638 --- --- --- --- 13.1400194168091 8.58968257904053 10.7130479812622 2.08823013305664 0.018554700538516 0.129638999700546 0.030273400247097 0.149657994508743 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5H10.02c /DEF=conserved fungal protein --- --- --- --- --- --- SPAC5H10.02c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.83657979004817 -1.52974446912296 -3.10116857279896 -1.22654350468623 -6.2924192160638 Max fold change at or above threshold 3 6.2924192160638 Max fold change at or above threshold PAAAPA No 4 0 PAPA 2 2 0 No No 1 < x = 2
1771777_at SPAC6B12.16.S1 --- 6.28872366095342 --- --- --- --- 3.67448687553406 0.584297716617584 1.13019049167633 2.26704931259155 0.398925989866257 0.780517995357513 0.398925989866257 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6B12.16 /GEN=meu26 /DEF=conserved fungal protein --- --- --- --- --- --- SPAC6B12.16 // |meu26||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.13705800333668 -6.28872366095342 2.0331989892236 -3.25121021862779 -1.62082353265338 Max fold change at or above threshold 1 6.28872366095342 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771316_at SPBC20F10.05.S1 --- 6.28022233430987 --- --- --- --- 11.3576850891113 11.3421669006348 10.8812522888184 7.13443565368652 0.194580003619194 0.00585938012227416 0.0952147990465164 0.0107421996071935 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC20F10.05 /DEF=sequence orphan --- --- --- --- --- --- SPBC20F10.05 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.41150688906001 -1.00136818551627 -6.28022233430987 -1.04378473981185 -1.59195283837798 Max fold change at or above threshold 4 6.28022233430987 Max fold change at or above threshold APPAAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1778967_at SPAC2G11.06.S1 --- 6.27920789830659 --- --- --- --- 6.85574531555176 3.60453033447266 4.48510456085205 3.51506352424622 0.533936023712158 0.390625 0.274170011281967 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2G11.06 /GEN=vps4 /DEF=AAA family ATPase --- --- --- --- --- --- SPAC2G11.06 // |vps4||AAA family ATPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.04762832177904 -1.90198019697197 -6.27920789830659 -1.52855863727051 -1.95039016173169 Max fold change at or above threshold 4 6.27920789830659 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773856_at SPCC1827.01c.S1 --- 6.27890272552142 --- --- --- --- 1.36452996730804 8.56775093078613 6.35858583450317 3.36069440841675 0.62548828125 0.26708984375 0.219482004642487 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1827.01c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC1827.01c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.10824002800007 6.27890272552142 3.06497938628789 4.65990926314901 2.46289527451475 Max fold change at or above threshold 3 6.27890272552142 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773964_at SPCC576.14.S1 --- 6.27764545580473 --- --- --- --- 2.65406084060669 10.8073234558105 10.5194549560547 16.6612529754639 0.665526986122131 0.0676269978284836 0.366210997104645 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC576.14 /DEF=diphthine synthase (predicted) --- --- --- --- --- --- SPCC576.14 // |||diphthine synthase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.16052362131374 4.07199537043774 2.85926978752487 3.96353195643023 6.27764545580473 Max fold change at or above threshold 4 6.27764545580473 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779328_at SPCC61.01c.S1 --- 6.27572825727382 --- --- --- --- 2.28899192810059 11.4315214157104 11.8158273696899 14.3650913238525 0.780517995357513 0.334473013877869 0.466064006090164 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC61.01c /GEN=str2 /DEF=membrane transporter --- --- --- --- --- --- SPCC61.01c // |str2|str1, SPCC622.20c|siderophore-iron transporter Str2 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.74270874638222 4.9941291952027 3.27678505213355 5.1620222966425 6.27572825727382 Max fold change at or above threshold 3 6.27572825727382 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771806_at YDR374C.S1 Hypothetical protein 6.27548350144121 60.5287475585938 50.973217010498 --- --- --- --- 50.4771308898926 88.7705001831055 32.286994934082 51.4693031311035 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR374C /GEN=FRQ1 /DB_XREF=GI:6320582 /SEG=NC_001136:-1223462,1224382 /DEF=Hypothetical ORF /NOTE=Ydr374cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002782 // YDR374C SGDID:S0002782, Chr IV from 1224384-1223464, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDR374C // cdna:known chromosome:SGD1:IV:1223464:1224384:-1 gene:YDR374C // ensembl // 11 // --- --- No cerevisiae_gene 6.27548350144121 1.75862808797004 -1.42549468434766 -1.5633889432246 1.01965587630912 Max fold change at or above threshold 4 6.27548350144121 Max fold change at or above threshold -0.222398474796381 1.39243408083063 -0.989477065029772 -0.18055854100448 55.7509822845459 23.7135232131509 0.425347182084076 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776755_at SPBP19A11.02c.S1 --- 6.27336481430801 --- --- --- --- 7.40265989303589 7.55172395706177 1.18001425266266 5.60424900054932 0.533936023712158 0.466064006090164 0.870360970497131 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP19A11.02c /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPBP19A11.02c // |||glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.17825516806706 1.02013655445202 -2.67897770389334 -6.27336481430801 -1.32090131832299 Max fold change at or above threshold 3 6.27336481430801 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770800_at SPBC354.08c.S1 --- 6.27199857024303 --- --- --- --- 1.40874302387238 8.83563423156738 7.6621150970459 0.30500739812851 0.601073980331421 0.111571997404099 0.129638999700546 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC354.08c /DEF=DUF221 --- --- --- --- --- --- SPBC354.08c // |||DUF221|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.66553067153034 6.27199857024303 4.07045208702122 5.43897287667424 -4.61871755411922 Max fold change at or above threshold 2 6.27199857024303 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775862_at SPCC24B10.15.S1 --- 6.27132175909282 --- --- --- --- 3.73266792297363 2.32636499404907 6.14768409729004 0.59519636631012 0.601073980331421 0.567627012729645 0.725830018520355 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC24B10.15 /DEF=RNase (predicted) --- --- --- --- --- --- SPCC24B10.15 // |||PINc domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.257744362062 -1.60450657249483 -5.46822221892352 1.64699464944433 -6.27132175909282 Max fold change at or above threshold 2 6.27132175909282 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775049_at SPBC354.14c.S1 --- 6.26805969793465 --- --- --- --- 1.50025188922882 9.40366840362549 6.17130470275879 4.01030015945435 0.466064006090164 0.219482004642487 0.274170011281967 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC354.14c /GEN=vac8 /DEF=armadillo repeat protein --- --- --- --- --- --- SPBC354.14c // |vac8||armadillo repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.43544402970991 6.26805969793465 3.98380265434514 4.11351236886697 2.67308455883083 Max fold change at or above threshold 3 6.26805969793465 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780219_at SPBC409.03.S1 --- 6.26335580954382 --- --- --- --- 1.07848739624023 0.323058813810349 2.70446300506592 0.172190025448799 0.828612983226776 0.932372987270355 0.366210997104645 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC409.03 /GEN=swi5 /DEF=involved in mating-type switching (PMID 2598273) --- --- --- --- --- --- AB089499 // Schizosaccharomyces pombe mRNA for swi5 protein, complete cds. // gb // 11 // --- /// SPBC409.03 // |swi5||Swi5 protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.08552729019659 -3.33836239760776 -2.33827935280093 2.50764451628649 -6.26335580954382 Max fold change at or above threshold 1 6.26335580954382 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776040_at SPCC550.05.S1 --- 6.26098348481058 --- --- --- --- 1.16600000858307 4.83621740341187 1.12310457229614 2.72941088676453 0.601073980331421 0.24609400331974 0.567627012729645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC550.05 /GEN=nse1 /DEF=Smc5-6 complex (PMID 12966087) --- --- --- --- --- --- SPCC550.05 // |nse1||Smc5-6 complex non-SMC subunit 1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.61433658343929 4.14769928628806 6.26098348481058 -1.03819362626156 2.34083264723242 Max fold change at or above threshold 2 6.26098348481058 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776628_at SPAC4F10.03c.S1 --- 6.25776906343315 --- --- --- --- 5.48779773712158 1.54582643508911 4.05123043060303 1.04553389549255 0.432372987270355 0.780517995357513 0.567627012729645 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F10.03c /DEF=tRNA methyltransferase (predicted) --- --- --- --- --- --- SPAC4F10.03c // |||2'-O-ribose methyltransferase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.25776906343315 -3.55007367745347 -1.14795443351203 -1.35460024580846 -5.24879945143841 Max fold change at or above threshold 2 6.25776906343315 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769496_at SPAC1A6.11.S1 --- 6.25435745049718 --- --- --- --- 1.31425034999847 2.20539307594299 2.6735475063324 0.70085996389389 0.633789002895355 0.533936023712158 0.432372987270355 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1A6.11 /DEF=dubious --- --- --- --- --- --- SPAC1A6.11 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -5.10707031495643 1.67806162345367 -6.25435745049718 2.03427566622714 -1.87519678352957 Max fold change at or above threshold 1 6.25435745049718 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780049_at SPAC2F3.17c.S1 --- 6.2538356970097 --- --- --- --- 0.610871553421021 3.82029032707214 0.725057065486908 1.67080736160278 0.943848013877869 0.389892578125 0.828612983226776 0.326416015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F3.17c /GEN=lsm6 /DEF=small nuclear ribonucleoprotein (snRNP) --- --- --- --- --- --- SPAC2F3.17c // |lsm6||small nuclear ribonucleoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.49466021479386 6.2538356970097 -2.50535424191559 1.1869222939363 2.73512058671889 Max fold change at or above threshold 1 6.2538356970097 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769718_at SPBC4F6.15c.S1 --- 6.23312728457194 --- --- --- --- 3.23158144950867 20.142858505249 7.8247013092041 6.6405234336853 0.466064006090164 0.129638999700546 0.24609400331974 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4F6.15c /GEN=swi10 /DEF=endonuclease complex subunit (predicted) --- --- --- --- --- --- SPBC4F6.15c // |swi10|rad23|DNA repair endonuclease|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.74036336244724 6.23312728457194 1.84250619824726 2.42132263458616 2.05488351057806 Max fold change at or above threshold 4 6.23312728457194 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-Scv2-r2-Bs-lys-3_at AFFX-Scv2-r2-Bs-lys-3 --- 6.23247067148409 --- --- --- --- 5.60259580612183 9.72733688354492 1.67412304878235 4.81416416168213 0.432372987270355 0.171387001872063 0.696289002895355 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 1008-1263 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). --- --- --- --- --- --- AFFX-Scv2-r2-Bs-lys-3 // --- // affx // --- // --- --- AFFX_control No 1.0805809951832 1.73621964178035 -6.23247067148409 -3.34658543181566 -1.16377331930538 Max fold change at or above threshold 3 6.23247067148409 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770096_at SPCC1223.12c.S1 --- 6.23185501836102 --- --- --- --- 0.912393808364868 3.98434495925903 5.68590593338013 1.06279587745667 0.753906011581421 0.432372987270355 0.0107421996071935 0.39013671875 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1223.12c /GEN=meu10 /DEF=involved in cell wall biosynthesis (predicted) --- --- --- --- --- --- SPCC1223.12c // |meu10||GPI anchored protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.16244376559282 4.36691363173487 5.92021860236743 6.23185501836102 1.16484336885334 Max fold change at or above threshold 2 6.23185501836102 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1773532_at SPBPB7E8.01.S1 --- 6.2316672320317 --- --- --- --- 1.27461040019989 5.14020538330078 6.72435283660889 3.29046249389648 0.805419981479645 0.5 0.398925989866257 0.42333984375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB7E8.01 /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPBPB7E8.01 // |||glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.89624922531862 4.03276592007618 6.2316672320317 5.27561428618058 2.58154373554496 Max fold change at or above threshold 3 6.2316672320317 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770022_at SPBC646.10c.S1 --- 6.22348412245877 --- --- --- --- 8.62388038635254 1.38569974899292 4.42351245880127 5.66327667236328 0.171387001872063 0.466064006090164 0.24609400331974 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC646.10c /DEF=ribonucleoprotein (RNP) complex (predicted) (PMID 12068309) --- --- --- --- --- --- SPBC646.10c // |||ribonucleoprotein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.166313973314 -6.22348412245877 -2.89299166162456 -1.94955489934113 -1.52277221920606 Max fold change at or above threshold 3 6.22348412245877 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772215_at SPCP1E11.02.S1 --- 6.22278480061072 --- --- --- --- 1.58575117588043 4.59453058242798 9.86778831481934 2.73703598976135 0.725830018520355 0.71875 0.334473013877869 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP1E11.02 /DEF=Ark1Prk1 family protein kinase --- --- --- --- --- --- SPCP1E11.02 // |||Ark1/Prk1 family protein kinase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.41074727397889 2.89738431370043 4.82936226178363 6.22278480061072 1.72601857806709 Max fold change at or above threshold 3 6.22278480061072 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779704_at SPBC19F5.02c.S1 --- 6.2192909733682 --- --- --- --- 0.8414027094841 0.424971997737885 5.23292827606201 0.916988790035248 0.828612983226776 0.962401986122131 0.129638999700546 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19F5.02c /DEF=WD repeat protein --- --- --- --- --- --- SPBC19F5.02c // |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.50491888739756 -1.97990153224887 -1.03991984089583 6.2192909733682 1.08983341710118 Max fold change at or above threshold 1 6.2192909733682 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779171_at SPBC6B1.10.S1 --- 6.21836105409575 --- --- --- --- 5.9608359336853 15.4529590606689 9.34117603302002 0.95858633518219 0.0561522990465164 0.00805663969367743 0.0239257998764515 0.303710997104645 M P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC6B1.10 /GEN=prp17 /DEF=WD repeat protein --- --- --- --- --- --- SPBC6B1.10 // |prp17||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.81960418360613 2.59241476071211 -1.11346419433638 1.56709161885031 -6.21836105409575 Max fold change at or above threshold 3 6.21836105409575 Max fold change at or above threshold MAPAPA No 4 0 MPPA 1 2 1 No No 1 < x = 2
1776880_at SPAC644.10.S1 --- 6.21457052688276 --- --- --- --- 0.273554563522339 0.217665195465088 1.70002412796021 0.188946634531021 0.991943001747131 0.997070014476776 0.870360970497131 0.994140982627869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC644.10 /DEF=dubious --- --- --- --- --- --- SPAC644.10 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.02958088534572 -1.25676759179542 3.84313487093538 6.21457052688276 -1.44778743586156 Max fold change at or above threshold 0 6.21457052688276 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775297_at SPAC4H3.10c.S1 --- 6.21266755006276 --- --- --- --- 3.27105045318604 15.3832111358643 20.321949005127 10.6024007797241 0.326416015625 0.219482004642487 0.219482004642487 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4H3.10c /GEN=pyk1 /DEF=pyruvate kinase (predicted) --- --- --- --- --- --- X91008 // S.pombe pyruvate kinase gene. // gb // 10 // --- /// SPAC4H3.10c // |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 2.21166126570543 4.70283517665735 3.41646469549803 6.21266755006276 3.24128316926365 Max fold change at or above threshold 4 6.21266755006276 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775159_at SPCC736.12c.S1 --- 6.20978745680521 --- --- --- --- 1.07073616981506 6.64904403686523 2.02675437927246 1.39377772808075 0.991943001747131 0.665526986122131 0.943848013877869 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC736.12c /DEF=hypothetical protein --- --- --- --- --- --- SPCC736.12c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -1.16525069632011 6.20978745680521 1.26563735458951 1.89286066578149 1.30170042571877 Max fold change at or above threshold 1 6.20978745680521 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778256_at SPAC25H1.03.S1 --- 6.2013982266923 --- --- --- --- 1.31705760955811 8.16759872436523 1.61345040798187 1.42877733707428 0.753906011581421 0.432372987270355 0.780517995357513 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25H1.03 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC25H1.03 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.70039607975178 6.2013982266923 -1.32758102854521 1.22504163544009 1.08482523976583 Max fold change at or above threshold 1 6.2013982266923 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771875_at SPAC186.07c.S1 --- 6.20101038619639 --- --- --- --- 0.961219727993011 4.41666603088379 0.221088200807571 0.181069657206535 0.753906011581421 0.398925989866257 0.904784977436066 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC186.07c /DEF=2-hydroxyacid dehydrogenase (predicted) --- --- --- --- --- --- SPAC186.07c // |||2-hydroxyacid dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.1481888515682 4.59485578818239 -6.20101038619639 -4.34767538241278 -5.30856325031093 Max fold change at or above threshold 1 6.20101038619639 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780068_at SPCC132.01c.S1 --- 6.19989035425832 --- --- --- --- 0.918159186840057 5.69248628616333 3.91002511978149 0.681249141693115 0.828612983226776 0.601073980331421 0.334473013877869 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC132.01c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC132.01c // ||SPCC1322.17c|conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.79477816212574 6.19989035425832 -2.47285132267479 4.25854816444005 -1.34775830257657 Max fold change at or above threshold 2 6.19989035425832 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771130_at SPAC664.02c.S1 --- 6.19874077306187 --- --- --- --- 1.54989588260651 9.60740280151367 6.02326440811157 5.71424293518066 0.567627012729645 0.49169921875 0.303710997104645 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC664.02c /DEF=actin-like protein --- --- --- --- --- --- SPAC664.02c // |||actin-like protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.07780830393943 6.19874077306187 1.14614856213556 3.88623808586553 3.68685600065654 Max fold change at or above threshold 3 6.19874077306187 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779504_at SPAC1A6.10.S1 --- 6.19753373520829 --- --- --- --- 8.63492584228516 3.98449516296387 8.07724094390869 4.25121927261353 0.274170011281967 0.334473013877869 0.0239257998764515 0.194580003619194 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1A6.10 /DEF=MoebThiF domain --- --- --- --- --- --- SPAC1A6.10 // ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.54844398444916 -2.16713171659671 -6.19753373520829 -1.0690439844805 -2.03116454093808 Max fold change at or above threshold 4 6.19753373520829 Max fold change at or above threshold APAAPA No 4 0 AAPA 3 1 0 No No x = 1
1773971_at SPBC31F10.03.S1 --- 6.19698692508177 --- --- --- --- 13.3343257904053 5.61233615875244 3.21843576431274 6.2255539894104 0.129638999700546 0.633789002895355 0.5 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31F10.03 /DEF=hypothetical protein --- --- --- --- --- --- SPBC31F10.03 // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.3844554042615 -2.37589577908843 -6.19698692508177 -4.14310763578426 -2.14186975377401 Max fold change at or above threshold 4 6.19698692508177 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774474_at SPAC694.02.S1 --- 6.19088558832252 --- --- --- --- 0.88030606508255 4.84883403778076 0.461998820304871 0.339344918727875 0.725830018520355 0.334473013877869 0.828612983226776 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC694.02 /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPAC694.02 // |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.19088558832252 5.5081229473593 4.2259278756944 -1.90542924871895 -2.5941336277632 Max fold change at or above threshold 1 6.19088558832252 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769471_at SPAC26F1.01.S1 --- 6.18936774407258 --- --- --- --- 1.14297115802765 1.94386768341064 7.07426881790161 2.59843468666077 0.466064006090164 0.466064006090164 0.24609400331974 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26F1.01 /GEN=sec74 /DEF=Sec7 domain --- --- --- --- --- --- SPAC26F1.01 // |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.72348107835919 1.70071455413193 -1.063430355169 6.18936774407258 2.2734035486466 Max fold change at or above threshold 2 6.18936774407258 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777590_at SPBC17F3.01c.S1 --- 6.18771578156617 --- --- --- --- 0.383273273706436 0.647547960281372 2.37158608436584 2.02788090705872 0.953857004642487 0.696289002895355 0.780517995357513 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17F3.01c /GEN=rga5 /DEF=GTPase activator --- --- --- --- --- --- SPBC17F3.01c // |rga5|SPBC557.01|GTPase activating protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.71336929922802 1.6895202580114 3.73878095258534 6.18771578156617 5.29095307754735 Max fold change at or above threshold 0 6.18771578156617 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Sp-RIP1-M_at AFFX-r2-Sp-RIP1-M --- 6.1871659461723 --- --- --- --- 5.72792387008667 11.1583805084229 0.925775051116943 1.93492579460144 0.171387001872063 0.1884765625 0.398925989866257 0.2392578125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=RIP1 ubiquinol-cytochrome c reductase iron-sulpher subunit precursor (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- U40480 // Schizosaccharomyces pombe Rieske iron-sulfur protein (Rip1) mRNA, complete cds. // gb // 11 // --- /// SPBC16H5.06 // |rip1||ubiquinol-cytochrome-c reductase complex subunit 5|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- AFFX_control No 1.36079429073151 1.94806718132132 -2.13468686424955 -6.1871659461723 -2.96028089866181 Max fold change at or above threshold 2 6.1871659461723 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776827_at SPAC8F11.02c.S1 --- 6.18708068196465 --- --- --- --- 1.70950245857239 5.57236051559448 3.9410994052887 0.513531625270844 0.5 0.018554700538516 0.0561522990465164 0.780517995357513 A P M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8F11.02c /DEF=zinc finger protein --- --- --- --- --- --- SPAC8F11.02c // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.18708068196465 3.25963878416881 -4.68369598712635 2.30540727538931 -3.32891369187004 Max fold change at or above threshold 2 6.18708068196465 Max fold change at or above threshold AAPAMA No 4 0 APMA 2 1 1 No No x = 1
1780214_at SPAC24B11.08c.S1 --- 6.18443234723526 --- --- --- --- 1.07459831237793 6.30584573745728 1.4581903219223 2.13587427139282 0.633789002895355 0.466064006090164 0.696289002895355 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24B11.08c /DEF=COPII-coated vesicle component --- --- --- --- --- --- SPAC24B11.08c // |||COPII-coated vesicle component|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 6.18443234723526 5.86809570127033 3.65712044217331 1.3569631602115 1.98760248065758 Max fold change at or above threshold 1 6.18443234723526 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770669_at SPCC1840.05c.S1 --- 6.18369678569027 --- --- --- --- 15.4141178131104 10.0689334869385 12.8182935714722 4.38562870025635 0.0561522990465164 0.0676269978284836 0.219482004642487 0.149657994508743 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1840.05c /DEF=phosphomannomutase (predicted) --- --- --- --- --- --- SPCC1840.05c // |||phosphomannomutase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.28025162981629 -1.53085903617356 -6.18369678569027 -1.2025093455041 -3.51468828453475 Max fold change at or above threshold 4 6.18369678569027 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1779427_at SPBC577.07.S1 --- 6.18047217355245 --- --- --- --- 2.04221343994141 3.50302720069885 12.6218433380127 1.18179500102997 0.753906011581421 0.805419981479645 0.432372987270355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC577.07 /GEN=ubp10 /DEF=ubiquitin C-terminal hydrolase activity --- --- --- --- --- --- SPBC577.07 // |ubp10||ubiquitin C-terminal hydrolase activity|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.39580585930057 1.71530905251478 -1.89779341289637 6.18047217355245 -1.7280606519418 Max fold change at or above threshold 2 6.18047217355245 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775653_at SPAC16E8.16.S1 --- 6.17956980733605 --- --- --- --- 0.96207582950592 3.58509922027588 0.283382385969162 4.47851848602295 0.533936023712158 0.5 0.633789002895355 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16E8.16 /DEF=transcription initiation factor activity --- --- --- --- --- --- SPAC16E8.16 // |||transcription factor TFIIB |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.17956980733605 3.72642063164296 4.55574856356074 -3.39497398970526 4.65505768742046 Max fold change at or above threshold 2 6.17956980733605 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771972_at YHR189W.S1 One of two (see also PTH2) mitochondrially-localized peptidyl-tRNA hydrolases; dispensable for cell growth and for mitochondrial respiration 6.17862234525701 17.5159058570862 16.7091012001038 PTH1 6412 // protein biosynthesis // inferred from curator /// 6412 // protein biosynthesis // inferred from sequence similarity 5739 // mitochondrion // inferred from direct assay 4045 // aminoacyl-tRNA hydrolase activity // inferred from sequence similarity /// 4045 // aminoacyl-tRNA hydrolase activity // inferred from direct assay 17.9499568939209 2.90517139434814 32.1266403198242 15.4682455062866 0.398925989866257 0.567627012729645 0.274170011281967 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR189W /GEN=PTH1 /DB_XREF=GI:6321983 /SEG=NC_001140:+484026,484598 /DEF=peptidyl-tRNA hydrolase /NOTE=Pth1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: aminoacyl-tRNA hydrolase activity [goid GO:0004045] [evidence ISS] [pmid 12475929]; go_function: aminoacyl-tRNA hydrolase activity [goid GO:0004045] [evidence IDA] [pmid 12799450]; go_process: protein biosynthesis [goid GO:0006412] [evidence IC] [pmid 12475929]; go_process: protein biosynthesis [goid GO:0006412] [evidence ISS] [pmid 8563640] --- --- --- --- --- --- S0001232 // PTH1 SGDID:S0001232, Chr VIII from 484027-484599, Verified ORF // sgd // 11 // --- /// GENSCAN00000016712 // cdna:Genscan chromosome:SGD1:VIII:484027:484599:1 // ensembl // 11 // --- /// GENEFINDER00000020178 // cdna:GeneFinder chromosome:SGD1:VIII:484027:484599:1 // ensembl // 11 // --- /// YHR189W // cdna:known chromosome:SGD1:VIII:484027:484599:1 gene:YHR189W // ensembl // 11 // --- --- No cerevisiae_gene 1.53003847540529 -6.17862234525701 3.1324356624259 1.78978927412937 -1.16043910000172 Max fold change at or above threshold 4 6.17862234525701 Max fold change at or above threshold 0.0698948482817318 -1.1857607421816 1.25309761301839 -0.137231719118515 17.112503528595 11.9816179005114 0.700167446597756 AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1777370_at SPBC530.12c.S1 --- 6.17386714919303 --- --- --- --- 1.8857673406601 2.60786747932434 11.6424770355225 5.4596905708313 0.753906011581421 0.725830018520355 0.398925989866257 0.326171875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC530.12c /GEN=pdf1 /DEF=palmitoyl-protein thioesterase (N-term) (PMID 15075260) --- --- --- --- --- --- SPBC530.12c // |pdf1||palmitoyl-protein thioesterase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.95946959355047 1.38292111815421 -1.80793933977316 6.17386714919303 2.89520899694879 Max fold change at or above threshold 3 6.17386714919303 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778680_at SPAC9G1.11c.S1 --- 6.1737545363834 --- --- --- --- 2.61155819892883 3.98714971542358 0.423009723424912 3.23698401451111 0.39892578125 0.432372987270355 0.696289002895355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9G1.11c /GEN=spn4 /DEF=septin --- --- --- --- --- --- U29890 // Schizosaccharomyces pombe septin homolog (Spn4+) mRNA, complete cds. // gb // 11 // --- /// SPAC9G1.11c // |spn4||septin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.70837510694653 1.52673209314614 1.58351964077059 -6.1737545363834 1.23948377479728 Max fold change at or above threshold 3 6.1737545363834 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778314_at SPCC1183.10.S1 --- 6.17305227204922 --- --- --- --- 0.869062542915344 1.39194965362549 0.243615686893463 2.87718486785889 0.567627012729645 0.753906011581421 0.466064006090164 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1183.10 /GEN=wtf10 /DEF=wtf element --- --- --- --- --- --- SPCC1183.10 // |wtf10||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 6.17305227204922 1.6016679869277 -1.09782195232799 -3.56735050192149 3.31067641945207 Max fold change at or above threshold 1 6.17305227204922 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774183_at SPACUNK4.11c.S1 --- 6.17270118380859 --- --- --- --- 1.73115861415863 3.61802387237549 0.280453979969025 0.357078105211258 0.601073980331421 0.633789002895355 0.805419981479645 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPACUNK4.11c /DEF=hypothetical protein --- --- --- --- --- --- SPACUNK4.11c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.94880401000811 2.08994360354086 1.02385261931009 -6.17270118380859 -4.84812311058508 Max fold change at or above threshold 1 6.17270118380859 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774964_at SPBC20F10.04c.S1 --- 6.17133707081463 --- --- --- --- 1.31771445274353 8.13206005096436 1.7460378408432 2.86214828491211 0.567627012729645 0.466064006090164 0.633789002895355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC20F10.04c /DEF=hypothetical protein --- --- --- --- --- --- SPBC20F10.04c // |nse4|rad62|Smc5-Smc6 complex, Non-SMC Element 4|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 4.93105984463247 6.17133707081463 2.49891032849367 1.32505023164001 2.1720550146149 Max fold change at or above threshold 2 6.17133707081463 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779091_at YLR031W.S1 Hypothetical protein 6.16810368573807 17.3395967483521 99.0423240661621 --- --- --- --- 87.3418884277344 20.5189437866211 14.160249710083 110.74275970459 0.000732421991415322 0.001953125 0.0107421996071935 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR031W /GEN=RPL15A /DB_XREF=GI:6323059 /SEG=NC_001144:+204226,204786 /DEF=Hypothetical ORF /NOTE=Ylr031wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004021 // YLR031W SGDID:S0004021, Chr XII from 204226-204786, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000017844 // cdna:Genscan chromosome:SGD1:XII:204226:204786:1 // ensembl // 10 // --- /// YLR031W // cdna:known chromosome:SGD1:XII:204226:204786:1 gene:YLR031W // ensembl // 10 // --- --- No cerevisiae_gene -1.45990010182124 -4.25664641104401 1.29253291120709 -6.16810368573807 1.26792266228841 Max fold change at or above threshold 4 6.16810368573807 Max fold change at or above threshold 0.60480698163537 -0.781597712719106 -0.913524304176921 1.09031503526066 58.1909604072571 48.1987293560245 0.828285510648035 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1773644_at YKL114C.S1 Major apurinic/apyrimidinic endonuclease, 3'-repair diesterase involved in repair of DNA damage by oxidation and alkylating agents; controls spontaneous mutations 6.16791064512613 116.122089385986 527.709686279297 APN1 6281 // DNA repair // traceable author statement /// 6284 // base-excision repair // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 3906 // DNA-(apurinic or apyrimidinic site) lyase activity // inferred from mutant phenotype /// 3906 // DNA-(apurinic or apyrimidinic site) lyase activity // inferred from sequence similarity /// 3906 // DNA-(apurinic or apyrimidinic site) lyase activity // inferred from direct assay 483.084594726563 78.3222427368164 153.921936035156 572.334777832031 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL114C /GEN=APN1 /DB_XREF=GI:6322735 /SEG=NC_001143:-222998,224101 /DEF=major apurinic/apyrimidinic endonuclease/3'-repair diesterase /NOTE=Apn1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11238901]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 7690756]; go_function: DNA-(apurinic or apyrimidinic site) lyase activity [goid GO:0003906] [evidence IDA] [pmid 12767225]; go_function: DNA-(apurinic or apyrimidinic site) lyase activity [goid GO:0003906] [evidence IMP,ISS] [pmid 1693433]; go_process: DNA repair [goid GO:0006281] [evidence TAS] [pmid 10806210]; go_process: base-excision repair [goid GO:0006284] [evidence IDA] [pmid 9295360] --- --- --- --- --- --- S0001597 // APN1 SGDID:S0001597, Chr XI from 224101-222998, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018330 // cdna:Genscan chromosome:SGD1:XI:222998:224101:-1 // ensembl // 11 // --- /// GENEFINDER00000023160 // cdna:GeneFinder chromosome:SGD1:XI:222998:224041:-1 // ensembl // 11 // --- /// YKL114C // cdna:known chromosome:SGD1:XI:222998:224101:-1 gene:YKL114C // ensembl // 11 // --- --- No cerevisiae_gene 1.15489601961273 -6.16791064512613 -1.04334576340962 -3.13850388820619 1.18475062976493 Max fold change at or above threshold 4 6.16791064512613 Max fold change at or above threshold 0.664941115069614 -1.00500545742109 -0.693100340543741 1.03316468289521 321.915887832642 242.380420222696 0.75293090333182 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772953_at SPAC27F1.08.S1 --- 6.16745965877336 --- --- --- --- 1.06778311729431 6.58550930023193 2.17665004730225 2.24181079864502 0.850341975688934 0.665526986122131 0.725830018520355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27F1.08 /DEF=Nramp family --- --- --- --- --- --- SPAC27F1.08 // |||Nramp family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.17788736741664 6.16745965877336 -1.66949130191955 2.03847580285566 2.09950013475172 Max fold change at or above threshold 1 6.16745965877336 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773295_at YNL106C.S1 Phosphatidylinositol 4,5-bisphosphate 5-phosphatase, synaptojanin-like protein with an N-terminal Sac1 domain, plays a role in endocytosis; hyperosmotic stress causes translocation to actin patches 6.16012980119383 95.8987350463867 582.418975830078 INP52 6897 // endocytosis // inferred from genetic interaction /// 7047 // cell wall organization and biogenesis // inferred from genetic interaction /// 46856 // phosphoinositide dephosphorylation // inferred from sequence similarity /// 48017 // inositol lipid-mediated signaling // traceable author statement 5624 // membrane fraction // inferred from direct assay /// 30479 // actin cortical patch // inferred from direct assay 4445 // inositol-polyphosphate 5-phosphatase activity // inferred from sequence similarity 549.749145507813 89.2431106567383 102.554359436035 615.088806152344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL106C /GEN=INP52 /DB_XREF=GI:6324224 /SEG=NC_001146:-420944,424495 /DEF=Phosphatidylinositol 4,5-bisphosphate 5-phosphatase, synaptojanin-like protein with an N-terminal Sac1 domain, plays a role in endocytosis; hyperosmotic stress causes translocation to actin patches /NOTE=Inp52p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 11094088]; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 9560389]; go_function: inositol-polyphosphate 5-phosphatase activity [goid GO:0004445] [evidence ISS] [pmid 9560389]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IGI] [pmid 9560389]; go_process: dephosphorylation [goid GO:0016311] [evidence ISS] [pmid 9560389]; go_process: endocytosis [goid GO:0006897] [evidence IGI] [pmid 9788876] --- --- --- --- --- --- S0005050 // INP52 SGDID:S0005050, Chr XIV from 424495-420944, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019948 // cdna:Genscan chromosome:SGD1:XIV:420944:424162:-1 // ensembl // 11 // --- /// GENEFINDER00000020425 // cdna:GeneFinder chromosome:SGD1:XIV:420944:423349:-1 // ensembl // 11 // --- /// YNL106C // cdna:known chromosome:SGD1:XIV:420944:424495:-1 gene:YNL106C // ensembl // 11 // --- --- No cerevisiae_gene -2.16670404296031 -6.16012980119383 -1.61995778116023 -5.36056339809426 1.11885359200363 Max fold change at or above threshold 4 6.16012980119383 Max fold change at or above threshold 0.74622193999207 -0.885570801216863 -0.838402691592615 0.977751552817408 339.158855438232 282.208655070927 0.832083994110314 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777085_at YOL164W.S1 Bacterially-derived sulfatase required for use of alkyl- and aryl-sulfates as sulfur sources 6.15878334494835 6.8050856590271 2.95605003833771 --- --- --- --- 1.5986921787262 3.76417255401611 9.84599876403809 4.31340789794922 0.753906011581421 0.432372987270355 0.111571997404099 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL164W /GEN=AAD15 /DB_XREF=GI:6324409 /SEG=NC_001147:+6175,8115 /DEF=Hypothetical ORF /NOTE=Yol164wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005524 // YOL164W SGDID:S0005524, Chr XV from 6175-8115, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017341 // cdna:Genscan chromosome:SGD1:XV:6175:8115:1 // ensembl // 11 // --- /// GENEFINDER00000022860 // cdna:GeneFinder chromosome:SGD1:XV:6175:8115:1 // ensembl // 11 // --- /// YOL164W // cdna:known chromosome:SGD1:XV:6175:8115:1 gene:YOL164W // ensembl // 11 // --- --- No cerevisiae_gene -4.85520277993516 2.35453241349772 2.69864069277885 6.15878334494835 2.69808531958044 Max fold change at or above threshold 3 6.15878334494835 Max fold change at or above threshold -0.934578548952025 -0.31791548476302 1.41400396799814 -0.161509934283097 4.8805678486824 3.51161031208804 0.719508553300014 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775017_at SPBC12C2.02c.S1 --- 6.1580247999264 --- --- --- --- 1.98673593997955 0.322625517845154 3.47595524787903 2.30619072914124 0.466064006090164 0.828612983226776 0.633789002895355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12C2.02c /GEN=ste16 /DEF=HR1 repeat --- --- --- --- --- --- SPBC12C2.02c // |ste20|ste16|HR1 repeat|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.256393452755 -6.1580247999264 2.35204487905249 1.74958089695342 1.16079378378033 Max fold change at or above threshold 1 6.1580247999264 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780203_at SPAC3G9.05.S1 --- 6.15519151842007 --- --- --- --- 2.783531665802 1.09631288051605 0.452225029468536 2.33018851280212 0.696289002895355 0.805419981479645 0.780517995357513 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G9.05 /DEF=GIT repeat protein (SMART) --- --- --- --- --- --- SPAC3G9.05 // |||GIT repeat protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.47768072882022 -2.53899385410098 1.05828225115285 -6.15519151842007 -1.1945521362367 Max fold change at or above threshold 1 6.15519151842007 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771674_at SPAC4F8.06.S1 --- 6.15224343281176 --- --- --- --- 1.20517373085022 3.42507004737854 7.41452217102051 4.99848222732544 0.567627012729645 0.432372987270355 0.018554700538516 0.0561522990465164 A A P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F8.06 /DEF=mitochondrial ribosomal protein subunit s12 --- --- --- --- --- --- SPAC4F8.06 // |||mitochondrial ribosomal protein subunit S12|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.30887531121009 2.84197204079634 2.91325327184801 6.15224343281176 4.14752006235577 Max fold change at or above threshold 3 6.15224343281176 Max fold change at or above threshold AAAAPM No 4 0 AAPM 2 1 1 No No x = 1
1773260_at SPAC27D7.08c.S1 --- 6.15124986336131 --- --- --- --- 3.06399703025818 0.566189110279083 6.76955413818359 0.498109668493271 0.432372987270355 0.665526986122131 0.171387001872063 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27D7.08c /DEF=methyltransferase (predicted) --- --- --- --- --- --- SPAC27D7.08c // |||DUF890|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.64703502334894 -5.41161420209564 -4.46659921701872 2.20938665127008 -6.15124986336131 Max fold change at or above threshold 2 6.15124986336131 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775556_at YBR182C-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 6.14411781113187 18.5630917549133 11.0550813674927 --- --- --- --- 9.4709529876709 22.5534267425537 14.5727567672729 12.6392097473145 0.030273400247097 0.00415039015933871 0.000732421991415322 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR182C-A /GEN=SMP1 /DB_XREF=GI:33438768 /SEG=NC_001134:-595318,595512 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ybr182c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028603 // YBR182C-A SGDID:S0028603, Chr II from 595550-595356, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YBR182C-A // cdna:known chromosome:SGD1:II:595356:595550:-1 gene:YBR182C-A // ensembl // 11 // --- --- No cerevisiae_gene 6.14411781113187 2.38132601565157 1.6696668638268 1.53867903116439 1.33452354412148 Max fold change at or above threshold 4 6.14411781113187 Max fold change at or above threshold -0.957549632051269 1.38917282398116 -0.0423926273299939 -0.389230564599896 14.809086561203 5.57478525901234 0.376443559565464 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1771495_at YDR528W.S1 Protein involved in regulation of cell wall composition and integrity and response to osmotic stress; overproduction suppresses a lysis sensitive PKC mutation; similar to Lre1p, which functions antagonistically to protein kinase A 6.14183104942309 41.8254013061523 55.0362739562988 HLR1 7047 // cell wall organization and biogenesis // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay --- 54.6861572265625 39.8283729553223 43.8224296569824 55.3863906860352 0.00122069998178631 0.00195312988944352 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR528W /GEN=HLR1 /DB_XREF=GI:6320737 /SEG=NC_001136:+1494574,1495845 /DEF=Protein involved in regulation of cell wall composition and integrity and response to osmotic stress; overproduction suppresses a lysis sensitive PKC mutation; similar to Lre1p, which functions antagonistically to protein kinase A /NOTE=Hlr1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IGI] [pmid 11532139] --- --- --- --- --- --- S0002936 // HLR1 SGDID:S0002936, Chr IV from 1494576-1495847, Verified ORF // sgd // 11 // --- /// GENSCAN00000025510 // cdna:Genscan chromosome:SGD1:IV:1494576:1495847:1 // ensembl // 11 // --- /// GENEFINDER00000023892 // cdna:GeneFinder chromosome:SGD1:IV:1494783:1495847:1 // ensembl // 11 // --- /// YDR528W // cdna:known chromosome:SGD1:IV:1494576:1495847:1 gene:YDR528W // ensembl // 11 // --- --- No cerevisiae_gene 6.14183104942309 -1.37304522300991 -1.40973866583486 -1.24790336032519 1.01280458337147 Max fold change at or above threshold 4 6.14183104942309 Max fold change at or above threshold 0.801462384534351 -1.10219018340192 -0.590451948561889 0.891179747429455 48.4308376312256 7.80488232017432 0.161155220556048 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775585_at SPAC4G8.09.S1 --- 6.13756979314554 --- --- --- --- 1.83839249610901 0.661212682723999 0.856111288070679 2.73904657363892 0.567627012729645 0.828612983226776 0.904784977436066 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G8.09 /DEF=leucine-tRNA ligase (predicted) --- --- --- --- --- --- SPAC4G8.09 // |||leucine-tRNA ligase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.13756979314554 -2.7803345945141 -2.26619377251867 -2.14737560609905 1.48991392177468 Max fold change at or above threshold 1 6.13756979314554 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776482_at SPCC830.07c.S1 --- 6.13726928769513 --- --- --- --- 11.8407745361328 1.92932295799255 17.6550178527832 6.7014331817627 0.0461426004767418 0.432372987270355 0.018554700538516 0.0107421996071935 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC830.07c /GEN=psi1 /DEF=DNAJ domain protein --- --- --- --- --- --- L37753 // Schizosaccharomyces pombe Psi protein mRNA, complete cds. // gb // 11 // --- /// SPCC830.07c // |psi1|psi|DNAJ domain protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.84366120218579 -6.13726928769513 1.09456616778158 1.49103572565358 -1.76690182756076 Max fold change at or above threshold 3 6.13726928769513 Max fold change at or above threshold PAAAPP No 4 0 PAPP 1 3 0 No No 2 < x = 3
1770881_at SPBC800.05c.S1 --- 6.13283442753784 --- --- --- --- 0.863279640674591 0.686217367649078 5.29435110092163 0.630615532398224 0.71875 0.665526986122131 0.366210997104645 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC800.05c /GEN=tub1 /DEF=tubulin (alpha 2) --- --- --- --- --- --- SPBC800.05c // |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.5860527626271 -1.25802651080096 2.70563773261152 6.13283442753784 -1.36894763342024 Max fold change at or above threshold 1 6.13283442753784 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774292_at SPBC776.07.S1 --- 6.1322723159082 --- --- --- --- 1.15035033226013 0.524430990219116 6.71864557266235 0.187589570879936 0.850341975688934 0.919434010982513 0.366210997104645 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC776.07 /DEF=localization mitochondrial matrix (predicted) --- --- --- --- --- --- SPBC776.07 // |||glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.28291148514618 -2.1935208897161 3.01513932150985 5.84052126056417 -6.1322723159082 Max fold change at or above threshold 1 6.1322723159082 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776144_at SPBC725.01.S1 --- 6.12757879290759 --- --- --- --- 9.56577205657959 1.56110143661499 13.0004234313965 7.66016817092896 0.194580003619194 0.780517995357513 0.274170011281967 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC725.01 /DEF=aspartate aminotransferase (predicted) --- --- --- --- --- --- SPBC725.01 // |||aspartate aminotransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.01912787808472 -6.12757879290759 -2.44184550890806 1.35905636832047 -1.24876789166099 Max fold change at or above threshold 3 6.12757879290759 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770699_at YDR192C.S1 Subunit of the nuclear pore complex (NPC) that localizes exclusively to the cytoplasmic side; involved in RNA export, most likely at a terminal step; interacts with Gle1p 6.12731816709419 101.731044769287 543.509521484375 NUP42 6406 // mRNA-nucleus export // traceable author statement /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6999 // nuclear pore organization and biogenesis // traceable author statement 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement 524.5859375 85.6142807006836 117.847808837891 562.43310546875 0.00122069998178631 0.00292969006113708 0.00415039015933871 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR192C /GEN=NUP42 /DB_XREF=GI:6320399 /SEG=NC_001136:-843562,844854 /DEF=Subunit of the nuclear pore complex (NPC) that localizes exclusively to the cytoplasmic side; involved in RNA export, most likely at a terminal step; interacts with Gle1p /NOTE=Nup42p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence TAS] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0002600 // NUP42 SGDID:S0002600, Chr IV from 844856-843564, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023858 // cdna:GeneFinder chromosome:SGD1:IV:843564:844856:-1 // ensembl // 11 // --- /// GENSCAN00000025244 // cdna:Genscan chromosome:SGD1:IV:843564:844856:-1 // ensembl // 11 // --- /// YDR192C // cdna:known chromosome:SGD1:IV:843564:844856:-1 gene:YDR192C // ensembl // 11 // --- --- No cerevisiae_gene -3.52136622921102 -6.12731816709419 -1.02212085758668 -4.45138473657674 1.07214674520083 Max fold change at or above threshold 4 6.12731816709419 Max fold change at or above threshold 0.789338098538057 -0.926285550272326 -0.800307933494055 0.937255385228324 322.620283126831 255.867105296491 0.793090573278998 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776412_at SPAC27E2.11c.S1 --- 6.12641139962024 --- --- --- --- 25.5639743804932 4.17274856567383 14.9629354476929 24.4611873626709 0.274170011281967 0.533936023712158 0.24609400331974 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27E2.11c /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPAC27E2.11c // |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.2824870167878 -6.12641139962024 -3.38714876478447 -1.70848657804207 -1.04508313523264 Max fold change at or above threshold 4 6.12641139962024 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Sp-SRB4-M_at AFFX-r2-Sp-SRB4-M --- 6.12603263708728 --- --- --- --- 3.87642335891724 3.76936388015747 0.632778763771057 4.49695682525635 0.753906011581421 0.567627012729645 0.665526986122131 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=SRB4 RNA polymerase II holoenzyme component (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPBC31F10.04c // |srb4||RNA polymerase II holoenzyme component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- AFFX_control No -2.77540043327176 -1.02840253214166 1.58458943527415 -6.12603263708728 1.16007886881386 Max fold change at or above threshold 3 6.12603263708728 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779943_at SPAC17G6.02c.S1 --- 6.12576162803713 --- --- --- --- 1.44842720031738 4.66905403137207 1.83205091953278 2.9382336139679 0.466064006090164 0.432372987270355 0.633789002895355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G6.02c /DEF=involved in sphingoid long-chain base release (predicted) --- --- --- --- --- --- SPAC17G6.02c // |||RTA1-like protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -3.46963824381641 3.22353379607134 6.12576162803713 1.26485536803737 2.02856837632161 Max fold change at or above threshold 2 6.12576162803713 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770188_at SPBC14F5.04c.S1 --- 6.12574879524838 --- --- --- --- 17.2961578369141 15.7928009033203 12.706995010376 2.82351732254028 0.0952147990465164 0.149657994508743 0.030273400247097 0.24609400331974 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14F5.04c /GEN=pgk1 /DEF=phosphoglycerate kinase --- --- --- --- --- --- SPBC14F5.04c // |pgk1||phosphoglycerate kinase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.13515673728144 -1.09519254645183 1.00431123463968 -1.3611524851305 -6.12574879524838 Max fold change at or above threshold 4 6.12574879524838 Max fold change at or above threshold APAAPA No 4 0 AAPA 3 1 0 No No x = 1
1773624_at SPCC970.02.S1 --- 6.12479056085739 --- --- --- --- 0.868609488010406 1.95388507843018 1.98915469646454 0.320049822330475 0.904784977436066 0.5 0.334473013877869 0.781005859375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC970.02 /DEF=glycosyl hydrolase family 76 --- --- --- --- --- --- SPCC970.02 // |||glycosyl hydrolase family 76|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -1.01916672937594 2.24944017467003 6.12479056085739 2.29004486356786 -2.71398209717956 Max fold change at or above threshold 0 6.12479056085739 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773678_at YOR093C.S1 Hypothetical protein 6.12429283292189 114.37281036377 665.807830810547 --- --- --- --- 630.856689453125 103.008903503418 125.736717224121 700.758972167969 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR093C /GEN=ECM3 /DB_XREF=GI:6324667 /SEG=NC_001147:-497506,502452 /DEF=Hypothetical ORF /NOTE=Yor093cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 8.89999961853027 --- S0005619 // YOR093C SGDID:S0005619, Chr XV from 502452-497506, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017532 // cdna:Genscan chromosome:SGD1:XV:497506:502452:-1 // ensembl // 11 // --- /// GENEFINDER00000022757 // cdna:GeneFinder chromosome:SGD1:XV:497506:501726:-1 // ensembl // 11 // --- /// YOR093C // cdna:known chromosome:SGD1:XV:497506:502452:-1 gene:YOR093C // ensembl // 11 // --- --- No cerevisiae_gene -1.62637495434849 -6.12429283292189 -1.51571097720514 -5.01728296539384 1.11080532850566 Max fold change at or above threshold 4 6.12429283292189 Max fold change at or above threshold 0.752907280587515 -0.897740369893837 -0.826667584675731 0.971500673982053 390.090320587158 319.782229596837 0.819764584559559 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775145_at SPAC24B11.06c.S1 --- 6.12178568845105 --- --- --- --- 10.6837406158447 5.29458618164063 3.76768183708191 6.98774433135986 0.0676269978284836 0.24609400331974 0.129638999700546 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24B11.06c /GEN=sty1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- U26739 // Schizosaccharomyces pombe protein kinase (SPC1) mRNA, complete cds. // gb // 11 // --- /// SPAC24B11.06c // |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.10398584244657 -2.01786131140738 -6.12178568845105 -2.8356270719821 -1.52892551719413 Max fold change at or above threshold 4 6.12178568845105 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772044_at SPBC1A4.10c.S1 --- 6.12144845456896 --- --- --- --- 1.44133818149567 5.1646294593811 2.54261445999146 6.15035057067871 0.398925989866257 0.5 0.303710997104645 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1A4.10c /GEN=pmc1 /DEF=RNA polymerase II holoenzyme component (PMID 11572939) --- --- --- --- --- --- SPBC1A4.10c // |pmc1|SPBP23A10.01c|RNA polymerase II holoenzyme component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.12144845456896 3.58321837698201 1.52614135963141 1.76406515322657 4.26711138970629 Max fold change at or above threshold 3 6.12144845456896 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776715_at YKL134C.S1 Mitochondrial intermediate peptidase, cleaves N-terminal residues of a subset of proteins upon import, after their cleavage by mitochondrial processing peptidase (Mas1p-Mas2p); may contribute to mitochondrial iron homeostasis 6.11729122188304 62.5198955535889 347.4990234375 OCT1 6627 // mitochondrial protein processing // inferred from mutant phenotype /// 6879 // iron ion homeostasis // inferred from mutant phenotype /// 6879 // iron ion homeostasis // inferred from genetic interaction 5739 // mitochondrion // inferred from genetic interaction /// 5739 // mitochondrion // inferred from mutant phenotype 4243 // mitochondrial intermediate peptidase activity // inferred from direct assay /// 4243 // mitochondrial intermediate peptidase activity // inferred from mutant phenotype /// 8237 // metallopeptidase activity // inferred from mutant phenotype /// 8237 // metallopeptidase activity // inferred from direct assay 341.908447265625 55.8921318054199 69.1476593017578 353.089599609375 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL134C /GEN=OCT1 /DB_XREF=GI:6322715 /SEG=NC_001143:-189131,191443 /DEF=Mitochondrial intermediate peptidase, cleaves N-terminal residues of a subset of proteins upon import, after their cleavage by mitochondrial processing peptidase (Mas1p-Mas2p); may contribute to mitochondrial iron homeostasis /NOTE=Oct1p; go_component: mitochondrion [goid GO:0005739] [evidence IGI,IMP] [pmid 10332043]; go_function: metallopeptidase activity [goid GO:0008237] [evidence IDA,IMP] [pmid 8831696]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IGI,IMP] [pmid 10332043]; go_process: mitochondrial processing [goid GO:0006627] [evidence IMP] [pmid 8035833] --- --- --- --- --- --- S0001617 // OCT1 SGDID:S0001617, Chr XI from 191443-189131, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018316 // cdna:Genscan chromosome:SGD1:XI:189131:191125:-1 // ensembl // 11 // --- /// GENEFINDER00000023069 // cdna:GeneFinder chromosome:SGD1:XI:189131:191125:-1 // ensembl // 11 // --- /// YKL134C // cdna:known chromosome:SGD1:XI:189131:191443:-1 gene:YKL134C // ensembl // 11 // --- --- No cerevisiae_gene -1.67409818340425 -6.11729122188304 -1.00722864270784 -4.94461346512901 1.03270218221623 Max fold change at or above threshold 4 6.11729122188304 Max fold change at or above threshold 0.831277721597999 -0.905469897419651 -0.824979713560573 0.899171889382225 205.009459495544 164.685019474495 0.803304490825578 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776900_at SPAC15E1.02c.S1 --- 6.11294471314837 --- --- --- --- 2.06300091743469 2.07581496238709 12.6110105514526 1.39920747280121 0.466064006090164 0.805419981479645 0.303710997104645 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15E1.02c /DEF=sequence orphan --- --- --- --- --- --- SPAC15E1.02c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- AF087837 // gb // 9 // Negative Strand Matching Probes No No 3.07321203769439 1.00621136173237 -1.30983645915203 6.11294471314837 -1.47440673205137 Max fold change at or above threshold 1 6.11294471314837 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770445_at SPBC4B4.02c.S1 --- 6.1119514948607 --- --- --- --- 1.03229713439941 6.30935001373291 5.66901540756226 1.31118547916412 0.567627012729645 0.303710997104645 0.466064006090164 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4B4.02c /GEN=nca2 /DEF=involved in control of mitochondrial synthesis of Atp6p and Atp8p (predicted) --- --- --- --- --- --- SPBC4B4.02c // |nca2||mitochondrial protein Nca2 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.06832627174187 6.1119514948607 5.61349892188219 5.49165082286164 1.27016285861044 Max fold change at or above threshold 2 6.1119514948607 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775437_at SPAC29B12.08.S1 --- 6.11139885559031 --- --- --- --- 0.26488009095192 1.61878788471222 0.493167459964752 0.198494121432304 0.989257991313934 0.932372987270355 0.994140982627869 0.991943001747131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29B12.08 /DEF=serine-proline rich protein --- --- --- --- --- --- SPAC29B12.08 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.05448260506052 6.11139885559031 2.84738432617555 1.86185174654848 -1.33444803826221 Max fold change at or above threshold 0 6.11139885559031 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775406_at SPBC1921.03c.S1 --- 6.11061157182704 --- --- --- --- 1.38755011558533 3.39107251167297 0.520937144756317 0.752051055431366 0.466064006090164 0.533936023712158 0.633789002895355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1921.03c /GEN=mex67 /DEF=Tap homolog --- --- --- --- --- --- SPBC1921.03c // |mex67||Tap homolog|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.08393439851184 2.44392795156265 6.11061157182704 -2.66356532559104 -1.8450211665343 Max fold change at or above threshold 1 6.11061157182704 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776444_at SPAC11E3.10.S1 --- 6.10853526304349 --- --- --- --- 9.05823421478271 2.97885060310364 1.48288154602051 5.51231622695923 0.5 0.658447265625 0.805419981479645 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11E3.10 /DEF=VanZ-like family protein --- --- --- --- --- --- SPAC11E3.10 // |||VanZ-like family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.19261515515042 -3.04084877749325 -2.24267428057373 -6.10853526304349 -1.64327187371461 Max fold change at or above threshold 3 6.10853526304349 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772439_at SPCC191.11.S1 --- 6.1049320462042 --- --- --- --- 3.85056471824646 1.14851868152618 2.36925363540649 1.49631321430206 0.633789002895355 0.989257991313934 0.79931640625 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC191.11 /GEN=inv1 /DEF=invertase (PMID 9535817) --- --- --- --- --- --- D89242 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1543. // gb // 11 // --- /// SPCC191.11 // |inv1||beta-fructofuranosidase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.38900537913913 -3.35263568645633 -6.1049320462042 -1.62522266957958 -2.57336811667637 Max fold change at or above threshold 1 6.1049320462042 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776387_at SPCC1393.03.S1 --- 6.10036928005476 --- --- --- --- 5.27829647064209 9.96148586273193 6.71482467651367 0.865242123603821 0.398925989866257 0.24609400331974 0.0461426004767418 0.665526986122131 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1393.03 /GEN=rps1501 /DEF=40S ribosomal protein S15 --- --- --- --- --- --- SPCC1393.03 // |rps1501|rps15-1|40S ribosomal protein S15|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.32822992052859 1.88725394985632 -1.09851013175901 1.27215754436333 -6.10036928005476 Max fold change at or above threshold 3 6.10036928005476 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1778333_at SPAC29E6.06c.S1 --- 6.09911371190568 --- --- --- --- 0.884283065795898 5.39334297180176 0.538117349147797 2.26447296142578 0.633789002895355 0.5 0.780517995357513 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29E6.06c /DEF=cysteine-tRNA ligase (predicted) --- --- --- --- --- --- SPAC29E6.06c // ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.8191312532489 6.09911371190568 -3.69529120129591 -1.64329038488782 2.56080100254735 Max fold change at or above threshold 1 6.09911371190568 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770125_at YDL218W.S1 Hypothetical protein 6.09832230433331 59.593448638916 277.039108276367 --- --- 5737 // cytoplasm // inferred from direct assay --- 257.986083984375 42.3044357299805 76.8824615478516 296.092132568359 0.000244141003349796 0.00122069998178631 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL218W /GEN=DTD1 /DB_XREF=GI:6319983 /SEG=NC_001136:+66494,67447 /DEF=Hypothetical ORF /NOTE=Ydl218wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002377 // span:7-29,44-66,71-93,135-157 // numtm:4 S0002377 // YDL218W SGDID:S0002377, Chr IV from 66494-67447, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024939 // cdna:Genscan chromosome:SGD1:IV:66494:67447:1 // ensembl // 11 // --- /// GENEFINDER00000023574 // cdna:GeneFinder chromosome:SGD1:IV:66563:67447:1 // ensembl // 11 // --- /// YDL218W // cdna:known chromosome:SGD1:IV:66494:67447:1 gene:YDL218W // ensembl // 11 // --- --- No cerevisiae_gene -2.97264757371631 -6.09832230433331 1.84568238146475 -3.35559084335255 1.14770582969232 Max fold change at or above threshold 4 6.09832230433331 Max fold change at or above threshold 0.704465635888003 -0.9899766414693 -0.71832409574948 1.00383510133078 168.316278457642 127.287692910246 0.756241131735095 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776726_at SPAC9E9.14.S1 --- 6.09369884791055 --- --- --- --- 1.19918131828308 2.59255647659302 7.30744981765747 5.31742668151855 0.850341975688934 0.5 0.171387001872063 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9E9.14 /GEN=vps24 /DEF=SNF7 family --- --- --- --- --- --- SPAC9E9.14 // |vps24||SNF7 family class E vps|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.17829104578356 2.16193868021968 -2.79828800151772 6.09369884791055 4.43421407625974 Max fold change at or above threshold 3 6.09369884791055 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771208_at SPBC25D12.02c.S1 --- 6.09179779431758 --- --- --- --- 1.52566623687744 9.2940502166748 5.21987199783325 0.419502258300781 0.567627012729645 0.030273400247097 0.149657994508743 0.624755859375 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25D12.02c /DEF=hypothetical protein --- --- --- --- --- --- SPBC25D12.02c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.96478071631234 6.09179779431758 3.0604678027 3.42137216624567 -3.63684868600527 Max fold change at or above threshold 2 6.09179779431758 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1778032_at SPBC839.03c.S1 --- 6.09106834422261 --- --- --- --- 5.61934900283813 5.25969696044922 1.33219110965729 0.922555565834045 0.567627012729645 0.466064006090164 0.725830018520355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC839.03c /DEF=hypothetical protein --- --- --- --- --- --- SPBC839.03c // |||DUF298 family neddylation protein Dcn1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -2.81723814354537 -1.06837885244974 1.64620184479291 -4.21812528405458 -6.09106834422261 Max fold change at or above threshold 2 6.09106834422261 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778891_at YMR287C.S1 RNase, component of the mitochondrial degradosome along with the ATP-dependent RNA helicase Suv3p; the degradosome associates with the ribosome and mediates turnover of aberrant or unprocessed RNAs 6.08977002800257 53.2874698638916 243.85791015625 MSU1 6401 // RNA catabolism // inferred from direct assay /// 6401 // RNA catabolism // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5759 // mitochondrial matrix // inferred from direct assay 8859 // exoribonuclease II activity // inferred from direct assay 244.93620300293 66.3540115356445 40.2209281921387 242.77961730957 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR287C /GEN=MSU1 /DB_XREF=GI:6323943 /SEG=NC_001145:-842435,845344 /DEF=Protein essential for mitochondrial biogenesis /NOTE=Msu1p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 12426313]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 9829834]; go_function: exoribonuclease II activity [goid GO:0008859] [evidence IDA] [pmid 12426313]; go_process: RNA catabolism [goid GO:0006401] [evidence IDA,IMP] [pmid 12426313] --- --- --- --- --- --- S0004900 // MSU1 SGDID:S0004900, Chr XIII from 845344-842435, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018955 // cdna:Genscan chromosome:SGD1:XIII:842435:845344:-1 // ensembl // 11 // --- /// GENEFINDER00000021896 // cdna:GeneFinder chromosome:SGD1:XIII:842435:844831:-1 // ensembl // 11 // --- /// YMR287C // cdna:known chromosome:SGD1:XIII:842435:845344:-1 gene:YMR287C // ensembl // 11 // --- --- No cerevisiae_gene -4.52641190076213 -3.69135486060783 1.13940067426528 -6.08977002800257 -1.00888289436015 Max fold change at or above threshold 4 6.08977002800257 Max fold change at or above threshold 0.871709474441165 -0.743754547507006 -0.980155812253164 0.852200885319005 148.572690010071 110.545446411071 0.744049571987813 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774577_at SPAC1805.14.S1 --- 6.08544367074501 --- --- --- --- 3.92188501358032 0.644469857215881 6.97340440750122 6.31392192840576 0.466064006090164 0.5927734375 0.274170011281967 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1805.14 /DEF=sequence orphan --- --- --- --- --- --- SPAC1805.14 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.21386579035645 -6.08544367074501 1.08163212454447 1.77807467158124 1.60992020585574 Max fold change at or above threshold 3 6.08544367074501 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778843_at SPBC1D7.05.S1 --- 6.08478848696917 --- --- --- --- 1.01468753814697 1.13519930839539 1.75376856327057 6.17415904998779 0.919434010982513 0.919434010982513 0.850341975688934 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1D7.05 /GEN=byr2 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPBC1D7.05 // |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.59554602097892 1.11876736997134 -1.4458375048708 1.72838287387791 6.08478848696917 Max fold change at or above threshold 1 6.08478848696917 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774041_at SPBC1539.02.S1 --- 6.0844719112967 --- --- --- --- 5.31919431686401 3.95330810546875 2.73468661308289 2.95175457000732 0.398925989866257 0.111571997404099 0.111571997404099 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1539.02 /DEF=hypothetical protein --- --- --- --- --- --- SPBC1539.02 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.56960649185529 -1.34550461915827 -6.0844719112967 -1.94508368579299 -1.80204491623801 Max fold change at or above threshold 4 6.0844719112967 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769376_at SPAC23G3.11.S1 --- 6.08071622516367 --- --- --- --- 1.18717098236084 3.50555658340454 3.78958463668823 0.702050149440765 0.55908203125 0.334473013877869 0.149657994508743 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23G3.11 /GEN=rpn6 /DEF=19S proteasome regulatory subunit --- --- --- --- --- --- SPAC23G3.11 // |rpn6||19S proteasome regulatory subunit|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.18139267956104 2.95286579228318 -6.08071622516367 3.19211359862601 -1.69100595350134 Max fold change at or above threshold 2 6.08071622516367 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779886_at SPAC607.08c.S1 --- 6.07888345895633 --- --- --- --- 5.73506736755371 2.46440839767456 0.943440914154053 7.07844829559326 0.334473013877869 0.466064006090164 0.5 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC607.08c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC607.08c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.09335754348751 -2.32715785783127 -1.30521483294666 -6.07888345895633 1.23423978167018 Max fold change at or above threshold 2 6.07888345895633 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1771668_at SPAC1834.08.S1 --- 6.07844526812123 --- --- --- --- 0.338615834712982 2.05825781822205 0.794300496578217 0.43625146150589 0.943848013877869 0.5 0.432372987270355 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1834.08 /GEN=mak1 /DEF=histidine kinase (PMID 11758939) --- --- --- --- --- --- SPAC1834.08 // |mak1||histidine kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.95920083940659 6.07844526812123 2.18505408613331 2.34572756247942 1.28833745142387 Max fold change at or above threshold 0 6.07844526812123 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775093_at SPAC140.04.S1 --- 6.07576156065082 --- --- --- --- 10.1426610946655 9.60992336273193 8.36132526397705 1.66936457157135 0.24609400331974 0.398925989866257 0.366210997104645 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC140.04 /DEF=hypothetical protein --- --- --- --- --- --- SPAC140.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.58676290407926 -1.05543621024072 -1.28429307071584 -1.21304467586771 -6.07576156065082 Max fold change at or above threshold 3 6.07576156065082 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777635_at SPAC2C4.14c.S1 --- 6.06798000055459 --- --- --- --- 1.79269516468048 10.8780384063721 6.38334083557129 1.45056557655334 0.780517995357513 0.24609400331974 0.24609400331974 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2C4.14c /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPAC2C4.14c // |||PAK-related kinase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.42060318719965 6.06798000055459 -5.01326079689461 3.56075085231181 -1.23585944245283 Max fold change at or above threshold 2 6.06798000055459 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778631_at SPAC13F5.07c.S1 --- 6.06420734078594 --- --- --- --- 11.7557373046875 13.6772994995117 6.65151023864746 5.41597700119019 0.018554700538516 0.0239257998764515 0.00805663969367743 0.018554700538516 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13F5.07c /DEF=dubious --- --- --- --- --- --- SPAC13F5.07c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.76454170962567 1.16345739488905 -6.06420734078594 -1.76737866783739 -2.17056632664875 Max fold change at or above threshold 4 6.06420734078594 Max fold change at or above threshold PPPAPP No 4 0 PPPP 0 4 0 No No 3 < x
1773755_at SPAC4F10.16c.S1 --- 6.06309453313391 --- --- --- --- 9.47156143188477 19.1260566711426 5.2791600227356 1.56216621398926 0.171387001872063 0.0375977009534836 0.194580003619194 0.398925989866257 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F10.16c /DEF=P-type ATPase (PMID 12707717) --- --- --- --- --- --- SPAC4F10.16c // |||P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.86089108178108 2.01931400737762 -1.55723884289901 -1.79414175571377 -6.06309453313391 Max fold change at or above threshold 3 6.06309453313391 Max fold change at or above threshold APPAAA No 4 0 APAA 3 1 0 No No x = 1
1776014_at YDR087C.S1 Essential evolutionarily conserved nucleolar protein necessary for biogenesis of 60S ribosomal subunits and processing of pre-rRNAs to mature rRNAs, associated with several distinct 66S pre-ribosomal particles 6.06296459725227 139.198501586914 842.319549560547 RRP1 6364 // rRNA processing // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 791.041381835938 147.92594909668 130.471054077148 893.597717285156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR087C /GEN=RRP1 /DB_XREF=GI:6320292 /SEG=NC_001136:-617464,618300 /DEF=involved in processing rRNA precursor species to mature rRNAs /NOTE=Rrp1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 3549696] --- --- --- --- --- --- S0002494 // RRP1 SGDID:S0002494, Chr IV from 618301-617465, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023688 // cdna:GeneFinder chromosome:SGD1:IV:617465:618301:-1 // ensembl // 11 // --- /// GENSCAN00000025160 // cdna:Genscan chromosome:SGD1:IV:617465:618301:-1 // ensembl // 11 // --- /// YDR087C // cdna:known chromosome:SGD1:IV:617465:618301:-1 gene:YDR087C // ensembl // 11 // --- --- No cerevisiae_gene 1.65621520657275 -5.34754981574557 -1.53890732113694 -6.06296459725227 1.12964724451102 Max fold change at or above threshold 4 6.06296459725227 Max fold change at or above threshold 0.735692735296091 -0.839942136204422 -0.882706684948045 0.986956085856376 490.75902557373 408.162731335594 0.831696841150144 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780057_at SPAC110.03.S1 --- 6.0606008904496 --- --- --- --- 1.21015322208405 7.33425569534302 1.54051268100739 0.771990895271301 0.780517995357513 0.601073980331421 0.753906011581421 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC110.03 /GEN=cdc42 /DEF=GTPase --- --- --- --- --- --- M83650 // Schizosaccharomyces pombe CDC42sp mRNA, complete cds. // gb // 11 // --- /// SPAC110.03 // |cdc42||GTPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.72256723414597 6.0606008904496 -1.8937371340521 1.27298977757082 -1.56757447464294 Max fold change at or above threshold 1 6.0606008904496 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770712_at SPAP8A3.11c.S1 --- 6.0602219158604 --- --- --- --- 2.19919919967651 0.640150606632233 0.362890869379044 0.669038891792297 0.805419981479645 0.888427972793579 0.969726979732513 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP8A3.11c /DEF=GTP1OBG family --- --- --- --- --- --- SPAP8A3.11c // |||GTP1/OBG family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.66286915902139 -3.43544031184517 -2.52145579806616 -6.0602219158604 -3.28710217994211 Max fold change at or above threshold 0 6.0602219158604 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773012_at SPAC2E1P5.01c.S1 --- 6.05713286249576 --- --- --- --- 4.50810813903809 5.58522939682007 4.42732191085815 1.53457427024841 0.274170011281967 0.274170011281967 0.432372987270355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2E1P5.01c /DEF=glycosyl hydrolase family 47 --- --- --- --- --- --- SPAC2E1P5.01c // ||SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.05713286249576 1.23892977376799 -1.29797272334496 -1.01824719995666 -2.93769303085495 Max fold change at or above threshold 3 6.05713286249576 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779028_at SPAC1071.06.S1 --- 6.0552653824676 --- --- --- --- 10.2144937515259 17.5598659515381 12.8416891098022 2.33615159988403 0.334473013877869 0.366210997104645 0.398925989866257 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1071.06 /DEF=actin-like protein --- --- --- --- --- --- SPAC1071.06 // |||actin-like protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.0552653824676 1.71911270188157 -1.05118910380915 1.25720269865395 -4.372359119174 Max fold change at or above threshold 3 6.0552653824676 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780035_at SPAP8A3.05.S1 --- 6.0502016328069 --- --- --- --- 4.0510401725769 9.44396591186523 12.8276863098145 4.74010992050171 0.171387001872063 0.0676269978284836 0.00585938012227416 0.24609400331974 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP8A3.05 /DEF=translation release factor (predicted) --- --- --- --- --- --- SPAP8A3.05 // |||translation release factor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -3.83338001548802 2.33124469507737 -6.0502016328069 3.16651668789911 1.17009699202427 Max fold change at or above threshold 4 6.0502016328069 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1771723_at SPBC28E12.06c.S1 --- 6.04607020706849 --- --- --- --- 0.790340840816498 4.77845621109009 0.470687061548233 1.49909853935242 0.601073980331421 0.432372987270355 0.696289002895355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC28E12.06c /DEF=lysosomal trafficking regulator (predicted) --- --- --- --- --- --- SPBC28E12.06c // ||SPBC3H7.16|beige protein homolog|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.34097185619092 6.04607020706849 -2.15206599873843 -1.67912166146404 1.8967747355732 Max fold change at or above threshold 1 6.04607020706849 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770330_at SPAC19G12.13c.S1 --- 6.04462336781248 --- --- --- --- 1.17256617546082 4.58658456802368 5.47262525558472 2.96003293991089 0.525390625 0.432372987270355 0.366210997104645 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19G12.13c /DEF=sequence orphan --- --- --- --- --- --- SPAC19G12.13c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -6.04462336781248 3.91157843711564 3.16464755996168 4.66722081031716 2.52440587308226 Max fold change at or above threshold 3 6.04462336781248 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777228_at YMR230W-A.S1 Identified by fungal homology and RT-PCR 6.04422632838818 128.640441894531 497.661743164063 --- --- --- --- 456.137939453125 181.814163208008 75.4667205810547 539.185546875 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR230W-A /GEN=RPS10B /DB_XREF=GI:33438858 /SEG=NC_001145:+733267,733455 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ymr230w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028576 // YMR230W-A SGDID:S0028576, Chr XIII from 733267-733455, Uncharacterized ORF // sgd // 11 // --- /// YMR230W-A // cdna:known chromosome:SGD1:XIII:733267:733455:1 gene:YMR230W-A // ensembl // 11 // --- --- No cerevisiae_gene 2.33382530276861 -2.50881411769485 -2.47641042357959 -6.04422632838818 1.18206687109045 Max fold change at or above threshold 4 6.04422632838818 Max fold change at or above threshold 0.649761100326324 -0.5968215227149 -1.0800857727126 1.02714619510118 313.151092529297 220.060645138678 0.702729929380943 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773878_at SPBC11C11.01.S1 --- 6.043064212593 --- --- --- --- 3.41490721702576 1.19597971439362 0.56509530544281 0.672531008720398 0.39013671875 0.870360970497131 0.919434010982513 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11C11.01 /DEF=hypothetical protein --- --- --- --- --- --- SPBC11C11.01 // ||SPBC17D1.08|hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.52149381049942 -2.85532202254549 -3.81385997726834 -6.043064212593 -5.07769481666457 Max fold change at or above threshold 1 6.043064212593 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771042_at YML021C.S1 Uracil-DNA glycosylase, required for repair of uracil in DNA formed by spontaneous cytosine deamination, not required for strand-specific mismatch repair, cell-cycle regulated, expressed in late G1, localizes to mitochondria and nucleus 6.03966026314977 98.0335502624512 477.810104370117 UNG1 6281 // DNA repair // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4844 // uracil DNA N-glycosylase activity // inferred from direct assay 455.151519775391 75.3604507446289 120.706649780273 500.468688964844 0.00122069998178631 0.00122069998178631 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML021C /GEN=UNG1 /DB_XREF=GI:6323620 /SEG=NC_001145:-229734,230813 /DEF=uracil DNA glycosylase /NOTE=Ung1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11812822]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11812822]; go_function: uracil DNA N-glycosylase activity [goid GO:0004844] [evidence IDA] [pmid 2644266]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 1938887] --- --- --- --- --- --- S0004483 // UNG1 SGDID:S0004483, Chr XIII from 230813-229734, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018699 // cdna:Genscan chromosome:SGD1:XIII:229734:230777:-1 // ensembl // 11 // --- /// GENEFINDER00000021885 // cdna:GeneFinder chromosome:SGD1:XIII:229734:230777:-1 // ensembl // 11 // --- /// YML021C // cdna:known chromosome:SGD1:XIII:229734:230813:-1 gene:YML021C // ensembl // 11 // --- --- No cerevisiae_gene -1.63149826303864 -6.03966026314977 -1.01624122515816 -3.77072448455755 1.09956501784684 Max fold change at or above threshold 4 6.03966026314977 Max fold change at or above threshold 0.757310248660401 -0.962597649854804 -0.757244516912305 0.962531918106708 287.921827316284 220.820585427066 0.766946318329984 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770902_at YKL037W.S1 Hypothetical protein 6.03930223894456 18.272819519043 43.9040508270264 --- --- --- --- 40.9386749267578 6.77870941162109 29.7669296264648 46.8694267272949 0.018554700538516 0.466064006090164 0.194580003619194 0.00292969006113708 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL037W /GEN=RGT1 /DB_XREF=GI:6322814 /SEG=NC_001143:+369008,369364 /DEF=Hypothetical ORF /NOTE=Ykl037wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001520 // span:10-29,41-63,95-117 // numtm:3 S0001520 // YKL037W SGDID:S0001520, Chr XI from 369008-369364, Uncharacterized ORF // sgd // 11 // --- /// YKL037W // cdna:known chromosome:SGD1:XI:369008:369364:1 gene:YKL037W // ensembl // 11 // --- YKL036C // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene 1.71618441890794 -6.03930223894456 -1.06882775443179 -1.37530727691715 1.14486916860762 Max fold change at or above threshold 4 6.03930223894456 Max fold change at or above threshold 0.556834872109844 -1.37423081811442 -0.0747048184018588 0.892100764406431 31.0884351730347 17.6896962584269 0.569012115275925 PPAPAP Called_P_>2EXP 3 0 PAAP 2 2 0 Yes No 1 < x = 2
1775501_at SPCC645.11c.S1 --- 6.03645882735018 --- --- --- --- 3.04224181175232 3.67292857170105 4.74483728408813 0.50397789478302 0.533936023712158 0.567627012729645 0.334473013877869 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC645.11c /DEF=sequence orphan --- --- --- --- --- --- SPCC645.11c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.70889317351226 1.20730987179006 -2.9457984854405 1.5596515917172 -6.03645882735018 Max fold change at or above threshold 3 6.03645882735018 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771325_at SPAC1705.02.S1 --- 6.03216624584374 --- --- --- --- 0.506592988967896 3.05585312843323 0.643254041671753 0.255153298377991 0.904784977436066 0.601073980331421 0.828612983226776 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1705.02 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC1705.02 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.62507477156727 6.03216624584374 4.71466699297112 1.2697649901991 -1.98544558188472 Max fold change at or above threshold 1 6.03216624584374 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777595_at SPAC4F8.05c.S1 --- 6.03134958211932 --- --- --- --- 0.651537835597992 0.700010418891907 3.92965245246887 0.595745503902435 0.665526986122131 0.870360970497131 0.633789002895355 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F8.05c /GEN=mrpl28 /DEF=mitochondrial ribosomal protein subunit YmL28 --- --- --- --- --- --- SPAC4F8.05c // |mrpl28||mitochondrial ribosomal protein subunit L28|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.1350083446231 1.07439718869039 1.07439910983368 6.03134958211932 -1.09365128453356 Max fold change at or above threshold 1 6.03134958211932 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771793_at SPBC4B4.10c.S1 --- 6.03094739486253 --- --- --- --- 12.0666542053223 20.606990814209 14.3282995223999 12.6688423156738 0.00585938012227416 0.219482004642487 0.111571997404099 0.0676269978284836 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4B4.10c /DEF=involved in autophagy (predicted) --- --- --- --- --- --- SPBC4B4.10c // |||autophagy-related protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.03094739486253 1.70776343330696 -2.32725762476992 1.18742936348338 1.04990514355553 Max fold change at or above threshold 4 6.03094739486253 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1776426_at SPACUNK4.10.S1 --- 6.02955454958405 --- --- --- --- 7.28834199905396 15.3267126083374 16.9986972808838 5.64717292785645 0.398925989866257 0.0805663987994194 0.171387001872063 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPACUNK4.10 /DEF=2-hydroxyacid dehydrogenase (predicted) --- --- --- --- --- --- D89185 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1030. // gb // 11 // --- /// SPACUNK4.10 // |||2-hydroxyacid dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.17978908267784 2.10290798789723 -6.02955454958405 2.33231334137315 -1.29061781747499 Max fold change at or above threshold 4 6.02955454958405 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771912_at SPCC188.13c.S1 --- 6.02911183646972 --- --- --- --- 3.74422574043274 0.621024429798126 1.15498816967011 0.629524827003479 0.24609400331974 0.99804699420929 0.696289002895355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC188.13c /GEN=dcr1 /DEF=dicer --- --- --- --- --- --- SPCC188.13c // |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.24172123694385 -6.02911183646972 -5.64210237766529 -3.24178709250519 -5.94770147232342 Max fold change at or above threshold 1 6.02911183646972 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779056_at SPBC16C6.08c.S1 --- 6.02694137803067 --- --- --- --- 2.95677947998047 4.66335201263428 1.11557054519653 0.772393405437469 0.334473013877869 0.24609400331974 0.725830018520355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16C6.08c /GEN=qcr6 /DEF=ubiquinol-cytochrome-c reductase complex subunit 8 --- --- --- --- --- --- SPBC16C6.08c // |qcr6||ubiquinol-cytochrome-c reductase complex subunit 8|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- U97395 // gb // 4 // Negative Strand Matching Probes No No -6.02694137803067 1.57717274629662 1.18580611003455 -2.65046391975109 -3.82807447495723 Max fold change at or above threshold 2 6.02694137803067 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770675_at SPAC1D4.13.S1 --- 6.02566492938269 --- --- --- --- 6.78366851806641 1.15078353881836 8.07961463928223 1.12579584121704 0.274170011281967 0.633789002895355 0.432372987270355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1D4.13 /GEN=byr1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPAC1D4.13 // |byr1|ste1, ste3|MAP kinase kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.7752673966455 -5.89482582018159 -3.5888870108804 1.19103912842504 -6.02566492938269 Max fold change at or above threshold 2 6.02566492938269 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770060_at SPAC17A2.01.S1 --- 6.02521321578384 --- --- --- --- 0.993202090263367 5.84837436676025 5.98425436019897 2.31831693649292 0.850341975688934 0.533936023712158 0.432372987270355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A2.01 /GEN=car1 /DEF=MFS efflux transporter (PMID 8246883) --- --- --- --- --- --- SPAC17A2.01 // |bsu1|SPAC1B1.05|MFS efflux transporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.35359630936882 5.88840320020817 -1.51903409246297 6.02521321578384 2.33418451211492 Max fold change at or above threshold 2 6.02521321578384 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775400_at SPBC31E1.04.S1 --- 6.01736690981544 --- --- --- --- 1.15242803096771 2.96449255943298 0.303608417510986 0.388179689645767 0.633789002895355 0.601073980331421 0.932372987270355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31E1.04 /GEN=pep12 /DEF=SNARE (predicted) --- --- --- --- --- --- SPBC31E1.04 // |pep12||SNARE |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -6.01736690981544 2.57238845270333 3.01966708895079 -3.79577101457014 -2.9688004336841 Max fold change at or above threshold 1 6.01736690981544 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779906_at SPCP31B10.03c.S1 --- 6.01635501495288 --- --- --- --- 2.29143738746643 0.380868047475815 6.64357948303223 1.04898762702942 0.688720703125 0.953857004642487 0.633789002895355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP31B10.03c /GEN=sep10 /DEF=transcriptional regulator (PMID 12471453) --- --- --- --- --- --- SPCP31B10.03c // |med31|soh1, sep10|mediator complex subunit |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.03169531840342 -6.01635501495288 -2.87651770515722 2.89930657471633 -2.18442746932626 Max fold change at or above threshold 1 6.01635501495288 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771382_at YDR370C.S1 Hypothetical protein 6.01461320160624 53.8896179199219 336.974960327148 --- --- 5737 // cytoplasm // inferred from direct assay --- 308.596527099609 56.4714431762695 51.3077926635742 365.353393554688 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR370C /GEN=XRS2 /DB_XREF=GI:6320578 /SEG=NC_001136:-1217770,1219098 /DEF=Hypothetical ORF /NOTE=Ydr370cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002778 // YDR370C SGDID:S0002778, Chr IV from 1219100-1217772, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025393 // cdna:Genscan chromosome:SGD1:IV:1217772:1219100:-1 // ensembl // 11 // --- /// YDR370C // cdna:known chromosome:SGD1:IV:1217772:1219100:-1 gene:YDR370C // ensembl // 11 // --- --- No cerevisiae_gene 1.34805551097196 -5.46464743492314 -1.3970353331261 -6.01461320160624 1.18391932983989 Max fold change at or above threshold 4 6.01461320160624 Max fold change at or above threshold 0.685481755561377 -0.841742288357608 -0.87302061693431 1.02928114973054 195.432289123535 165.087162507189 0.844728183083582 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773082_at SPAC22A12.10.S1 --- 6.01326187365175 --- --- --- --- 3.26152443885803 1.30436718463898 11.8080110549927 0.542388558387756 0.24609400331974 0.780517995357513 0.303710997104645 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22A12.10 /DEF=aminoalcoholphosphotransferase (predicted) --- --- --- --- --- --- SPAC22A12.10 // |||aminoalcoholphosphotransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.95291501634552 -2.50046495899907 2.44080344595051 3.62039631354933 -6.01326187365175 Max fold change at or above threshold 2 6.01326187365175 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774235_at SPAC6G10.06.S1 --- 6.01207672125929 --- --- --- --- 0.525749087333679 1.25425565242767 3.16084384918213 1.26998662948608 0.932372987270355 0.888427972793579 0.665526986122131 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G10.06 /DEF=amino acid oxidase (predicted) --- --- --- --- --- --- SPAC6G10.06 // |||amino acid oxidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.04851583380014 2.38565445503404 1.75232586060414 6.01207672125929 2.4155755284841 Max fold change at or above threshold 1 6.01207672125929 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777770_at SPBC1703.09.S1 --- 6.00959179331368 --- --- --- --- 0.77152144908905 1.79690599441528 4.58493900299072 1.45937752723694 0.780517995357513 0.696289002895355 0.366210997104645 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1703.09 /DEF=coiled-coil (region) (predicted) --- --- --- --- --- --- SPBC1703.09 // |||coiled-coil |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 6.00959179331368 2.3290421757385 3.07731268476733 5.94272396237881 1.89155794561519 Max fold change at or above threshold 1 6.00959179331368 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779465_at SPAC29A4.03c.S1 --- 6.00956284011392 --- --- --- --- 0.747492015361786 0.501023292541504 1.21203505992889 2.37122678756714 0.366210997104645 0.865234375 0.665526986122131 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29A4.03c /GEN=mrps9 /DEF=mitochondrial ribosomal protein small subunit mrps9 --- --- --- --- --- --- SPAC29A4.03c // |mrps9||mitochondrial ribosomal protein small subunit S9|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 6.00956284011392 -1.49193066767423 3.90466695399469 1.62146890537991 3.17224363449483 Max fold change at or above threshold 0 6.00956284011392 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774717_at YIR018W.S1 Basic leucine zipper (bZIP) transcription factor 6.00287354498339 316.416603088379 73.286262512207 YAP5 83 // G1/S-specific transcription in mitotic cell cycle // inferred from physical interaction /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from curator 3702 // RNA polymerase II transcription factor activity // inferred from direct assay 69.7321319580078 214.240036010742 418.593170166016 76.8403930664063 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR018W /GEN=YAP5 /DB_XREF=GI:6322208 /SEG=NC_001141:+384606,385343 /DEF=bZIP protein; transcription factor /NOTE=Yap5p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 9372930]; go_function: RNA polymerase II transcription factor activity [goid GO:0003702] [evidence IDA] [pmid 9372930]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IDA] [pmid 9372930] --- --- --- --- --- --- S0001457 // YAP5 SGDID:S0001457, Chr IX from 384606-385343, Verified ORF // sgd // 11 // --- /// GENSCAN00000016489 // cdna:Genscan chromosome:SGD1:IX:384606:385343:1 // ensembl // 11 // --- /// GENEFINDER00000019071 // cdna:GeneFinder chromosome:SGD1:IX:384606:385343:1 // ensembl // 11 // --- /// YIR018W // cdna:known chromosome:SGD1:IX:384606:385343:1 gene:YIR018W // ensembl // 11 // --- --- No cerevisiae_gene 1.47317342692997 3.07232878151146 1.83544884917062 6.00287354498339 1.10193666691102 Max fold change at or above threshold 4 6.00287354498339 Max fold change at or above threshold -0.766111230072386 0.118717308640224 1.36998094201192 -0.722587020579758 194.851432800293 163.317408662008 0.838163755405354 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-TagO-3_at AFFX-r2-TagO-3 --- 6.00214364143995 --- --- --- --- 0.286700695753098 0.827697098255157 0.67535525560379 1.72081875801086 0.850341975688934 0.725830018520355 0.753906011581421 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Clone 76G7, synthetic insert (999 bp)+ poly A tail (21 bp), 3 prime target sequence 400-999 --- --- --- --- --- --- AFFX-r2-TagO-3 // --- // unknown // --- // --- /// AFFX-r2-TagO-3 // --- // unknown // --- // --- /// AFFX-r2-TagO-3 // --- // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-TagO-3 // --- // unknown // --- // --- /// AFFX-r2-TagO-3 // --- // affx // --- // --- /// AFFX-r2-TagO-3 // --- // affx // --- // --- /// AFFX-r2-TagO-3 // --- // affx // --- // --- /// AFFX-r2-TagO-3 // --- // affx // --- // --- /// AFFX-r2-TagO-3 // --- // affx // --- // --- /// AFFX-r2-TagO-3 // --- // affx // --- // --- /// AFFX-r2-TagO-3 // --- // affx // --- // --- /// AFFX-r2-TagO-3 // --- // affx // --- // --- /// AFFX-r2-TagO-3 // --- // affx // --- // --- /// AFFX-r2-TagO-3 // --- // affx // --- // --- /// AFFX-r2-TagO-3 // --- // affx // --- // --- /// AFFX-r2-TagO-3 // --- // affx // --- // --- --- AFFX_control No 5.52376253874838 2.88697275770812 2.3391872353647 2.35561080111712 6.00214364143995 Max fold change at or above threshold 0 6.00214364143995 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779474_at SPBC8E4.03.S1 --- 6.00139459388387 --- --- --- --- 1.00455594062805 6.02873659133911 0.546714961528778 1.03340530395508 0.432372987270355 0.32666015625 0.888427972793579 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8E4.03 /DEF=agmatinase (predicted) --- --- --- --- --- --- SPBC8E4.03 // |||arginase family |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.16537756920577 6.00139459388387 1.21846351164721 -1.83744000313987 1.02871852343931 Max fold change at or above threshold 1 6.00139459388387 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773626_at SPBC29A10.14.S1 --- 5.99739128361619 --- --- --- --- 0.482509672641754 2.89379930496216 0.49543908238411 0.157073870301247 0.888427972793579 0.633789002895355 0.932372987270355 0.985840022563934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A10.14 /GEN=rec8 /DEF=involved in meiotic recombination (required) --- --- --- --- --- --- AB018077 // Schizosaccharomyces pombe mRNA for meiotic cohesin, complete cds. // gb // 11 // --- /// SPBC29A10.14 // |rec8||meiotic cohesin complex subunit Rec8p|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.04920823765384 5.99739128361619 1.72673059697704 1.02679616694846 -3.07186466925635 Max fold change at or above threshold 1 5.99739128361619 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773499_at SPAC20H4.08.S1 --- 5.99674004204425 --- --- --- --- 1.04912841320038 6.29135036468506 0.97137051820755 5.3306188583374 0.665526986122131 0.171387001872063 0.5 0.00537109375 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20H4.08 /DEF=hypothetical protein --- --- --- --- --- --- SPAC20H4.08 // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.89803825913372 5.99674004204425 4.62048783015312 -1.08004967572653 5.08099751304637 Max fold change at or above threshold 2 5.99674004204425 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1771628_at SPCC794.03.S1 --- 5.993526411307 --- --- --- --- 5.34219455718994 1.52457690238953 4.04145240783691 4.04639196395874 0.24609400331974 0.567627012729645 0.5 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC794.03 /DEF=amino acid permease family --- --- --- --- --- --- D89115 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0414. // gb // 9 // --- /// SPCC794.03 // |||amino acid permease family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.23238324836132 -3.50405056564672 -5.993526411307 -1.32185017119853 -1.32023654771286 Max fold change at or above threshold 3 5.993526411307 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772566_at YJR094C.S1 Master regulator of meiosis that is active only during meiotic events, activates transcription of early meiotic genes through interaction with Ume6p, degraded by the 26S proteasome following phosphorylation by Ime2p 5.99293186764458 253.224433898926 54.0370578765869 IME1 7126 // meiosis // traceable author statement 5634 // nucleus // inferred from direct assay 30528 // transcription regulator activity // traceable author statement 49.5512771606445 209.491439819336 296.957427978516 58.5228385925293 0.030273400247097 0.018554700538516 0.00805663969367743 0.030273400247097 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR094C /GEN=IME1 /DB_XREF=GI:6322553 /SEG=NC_001142:-604486,605568 /DEF=Master regulator of meiosis that is active only during meiotic events, activates transcription of early meiotic genes through interaction with Ume6p, degraded by the 26S proteasome following phosphorylation by Ime2p /NOTE=Ime1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8462841]; go_function: transcription regulator activity [goid GO:0030528] [evidence TAS] [pmid 8177171]; go_process: meiosis [goid GO:0007126] [evidence TAS] [pmid 8177171] --- --- --- --- --- --- S0003854 // IME1 SGDID:S0003854, Chr X from 605568-604486, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024206 // cdna:Genscan chromosome:SGD1:X:604486:605556:-1 // ensembl // 11 // --- /// GENEFINDER00000024483 // cdna:GeneFinder chromosome:SGD1:X:604486:605568:-1 // ensembl // 11 // --- /// YJR094C // cdna:known chromosome:SGD1:X:604486:605568:-1 gene:YJR094C // ensembl // 11 // --- --- No cerevisiae_gene -2.40090309475379 4.22777074221856 2.02214946299223 5.99293186764458 1.18105610886273 Max fold change at or above threshold 4 5.99293186764458 Max fold change at or above threshold -0.86392585344735 0.463679323782231 1.18970271141268 -0.789456181747562 153.630745887756 120.472686761023 0.784170421518626 PAPPPP Called_P_>2EXP 4 0 PPPP 0 4 0 Yes Yes 3 < x
1776137_at SPAC23G3.12c.S1 --- 5.99024451103791 --- --- --- --- 3.86915683746338 0.645909667015076 3.04108309745789 2.43365406990051 0.601073980331421 0.943848013877869 0.805419981479645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23G3.12c /DEF=PDZ domain protein --- --- --- --- --- --- AB010900 // Schizosaccharomyces pombe mRNA for YNL123w homolog, partial cds. // gb // 11 // --- /// SPAC23G3.12c // |||serine protease |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.59042405922576 -5.99024451103791 -2.78488615433615 -1.27229566357384 -1.58985489569664 Max fold change at or above threshold 2 5.99024451103791 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779339_at SPAC57A7.05.S1 --- 5.98698086914398 --- --- --- --- 5.20961761474609 0.870157718658447 2.35517573356628 4.184241771698 0.5 0.725830018520355 0.567627012729645 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC57A7.05 /DEF=hypothetical protein --- --- --- --- --- --- SPAC57A7.05 // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.17521829944276 -5.98698086914398 1.5120052794599 -2.21198679168519 -1.24505654763635 Max fold change at or above threshold 2 5.98698086914398 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773118_at YML080W.S1 Dihydrouridine synthase, member of a widespread family of conserved proteins including Smm1p, Dus3p, and Dus4p; modifies pre-tRNA(Phe) at U17 5.98347655444825 67.2853031158447 361.037200927734 DUS1 6400 // tRNA modification // inferred from direct assay 5634 // nucleus // inferred from direct assay 17150 // tRNA dihydrouridine synthase activity // inferred from direct assay 350.696380615234 58.6108055114746 75.9598007202148 371.378021240234 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML080W /GEN=DUS1 /DB_XREF=GI:6323560 /SEG=NC_001145:+108806,110077 /DEF=Dihydrouridine synthase, member of a widespread family of conserved proteins including Smm1p, Dus3p, and Dus4p; modifies pre-tRNA(Phe) at U17 /NOTE=Dus1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: tRNA dihydrouridine synthase activity [goid GO:0017150] [evidence IDA] [pmid 12003496]; go_process: tRNA modification [goid GO:0006400] [evidence IDA] [pmid 12003496] --- --- --- --- --- --- S0004545 // DUS1 SGDID:S0004545, Chr XIII from 108806-110077, Verified ORF // sgd // 11 // --- /// GENSCAN00000018650 // cdna:Genscan chromosome:SGD1:XIII:108806:110077:1 // ensembl // 11 // --- /// GENEFINDER00000021828 // cdna:GeneFinder chromosome:SGD1:XIII:109331:110077:1 // ensembl // 11 // --- /// YML080W // cdna:known chromosome:SGD1:XIII:108806:110077:1 gene:YML080W // ensembl // 11 // --- --- No cerevisiae_gene -1.44776037889443 -5.98347655444825 -1.21069945285991 -4.61686809720533 1.05897306550104 Max fold change at or above threshold 4 5.98347655444825 Max fold change at or above threshold 0.803358474688354 -0.915242624612129 -0.813162943933246 0.925047093857021 214.16125202179 169.955422013082 0.793586236579294 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-TagIN-5_at AFFX-r2-TagIN-5 --- 5.98111296027462 --- --- --- --- 4.53551578521729 4.39032602310181 12.5199565887451 5.16895198822021 0.665526986122131 0.533936023712158 0.149657994508743 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Clone 84A3, synthetic insert (1944 bp)+ poly A tail (21 bp), 5 prime target sequence 1-744 --- --- --- --- --- --- AFFX-r2-TagIN-5 // --- // unknown // --- // --- /// AFFX-r2-TagIN-5 // --- // unknown // --- // --- /// AFFX-r2-TagIN-5 // --- // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-TagIN-5 // --- // unknown // --- // --- /// AFFX-r2-TagIN-5 // --- // affx // --- // --- /// AFFX-r2-TagIN-5 // --- // affx // --- // --- /// AFFX-r2-TagIN-5 // --- // affx // --- // --- /// AFFX-r2-TagIN-5 // --- // affx // --- // --- /// AFFX-r2-TagIN-5 // --- // affx // --- // --- /// AFFX-r2-TagIN-5 // --- // affx // --- // --- /// AFFX-r2-TagIN-5 // --- // affx // --- // --- /// AFFX-r2-TagIN-5 // --- // affx // --- // --- /// AFFX-r2-TagIN-5 // --- // affx // --- // --- /// AFFX-r2-TagIN-5 // --- // affx // --- // --- /// AFFX-r2-TagIN-5 // --- // affx // --- // --- /// AFFX-r2-TagIN-5 // --- // affx // --- // --- --- AFFX_control No -1.00084778319478 -1.03307038278057 -5.98111296027462 2.76042619663054 1.13966133798222 Max fold change at or above threshold 4 5.98111296027462 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779965_at YHR143W.S1 Daughter cell-specific secreted protein with similarity to glucanases, degrades cell wall from the daughter side causing daughter to separate from mother; expression is repressed by cAMP 5.97124514858026 357.905639648438 289.298095703125 DSE2 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 7109 // cytokinesis, completion of separation // inferred from sequence similarity /// 7109 // cytokinesis, completion of separation // inferred from expression pattern 5576 // extracellular region // inferred from sequence similarity /// 5576 // extracellular region // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay 4338 // glucan 1,3-beta-glucosidase activity // inferred from sequence similarity 258.694458007813 248.943603515625 466.86767578125 319.901733398438 0.0107421996071935 0.0239257998764515 0.00585938012227416 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR143W /GEN=DSE2 /DB_XREF=GI:6321936 /SEG=NC_001140:+385511,386488 /DEF=Daughter cell-specific secreted protein with similarity to glucanases, degrades cell wall from the daughter side causing daughter to separate from mother; expression is repressed by cAMP /NOTE=Dse2p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 11309124]; go_component: extracellular [goid GO:0005576] [evidence ISS] [pmid 11747810]; go_component: extracellular [goid GO:0005576] [evidence IDA] [pmid 11935221]; go_function: glucan 1,3-beta-glucosidase activity [goid GO:0004338] [evidence ISS] [pmid 11747810]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 11309124]; go_process: cytokinesis, completion of separation [goid GO:0007109] [evidence IEP,ISS] [pmid 11747810] --- --- --- --- --- --- S0001186 // DSE2 SGDID:S0001186, Chr VIII from 385512-386489, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020236 // cdna:GeneFinder chromosome:SGD1:VIII:385512:386489:1 // ensembl // 11 // --- /// YHR143W // cdna:known chromosome:SGD1:VIII:385512:386489:1 gene:YHR143W // ensembl // 11 // --- GENSCAN00000016672 // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene 5.97124514858026 -1.03916892964705 1.04777182696505 1.80470690936545 1.23660064410339 Max fold change at or above threshold 4 5.97124514858026 Max fold change at or above threshold -0.645580085511129 -0.742563735129479 1.42494598260316 -0.036802161962551 323.601867675781 100.541220407348 0.310694190764314 PPPPPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1772245_at SPAC4D7.02c.S1 --- 5.96973431407394 --- --- --- --- 8.84214973449707 12.8079357147217 8.90372371673584 1.5802845954895 0.567627012729645 0.533936023712158 0.398925989866257 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4D7.02c /DEF=glycerophosphoryl diester phosphodiesterase (predicted) --- --- --- --- --- --- SPAC4D7.02c // |||glycerophosphoryl diester phosphodiesterase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.14526076637569 1.44850925389245 -5.96973431407394 1.00696368915791 -5.59528945592118 Max fold change at or above threshold 3 5.96973431407394 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774136_s_at SPBC839.15c.S1 --- 5.9696527827413 --- --- --- --- 19.9528312683105 7.00078010559082 11.2765703201294 6.71831655502319 0.018554700538516 0.149657994508743 0.0676269978284836 0.171387001872063 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC839.15c /GEN=ef1a-c /DEF=translation elongation factor (alpha 1 subunit) (PMID 9099890) --- --- --- --- --- --- D89112 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0373. // gb // 11 // --- /// U42189 // Schizosaccharomyces pombe elongation factor 1-alpha mRNA, complete cds. // gb // 11 // --- /// D82571 // Schizosaccharomyces pombe mRNA for elongation factor 1 alpha-A, complete cds. // gb // 11 // --- /// D82572 // Schizosaccharomyces pombe mRNA for elongation factor 1 alpha-B, complete cds. // gb // 11 // --- /// D82573 // Schizosaccharomyces pombe mRNA for elongation factor 1 alpha-C, complete cds. // gb // 11 // --- /// SPBC839.15c // |ef1a-c||translational elongation factor EF-1 alpha |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPCC794.09c // |ef1a-a||translational elongation factor EF-1 alpha |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPAC23A1.10 // |ef1a-b||translational elongation factor EF-1 alpha |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- U97366 // gb // 5 // Cross Hyb Matching Probes No No -3.75171406146359 -2.85008684280431 -5.9696527827413 -1.76940600748913 -2.96991532103263 Max fold change at or above threshold 4 5.9696527827413 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1776514_at YBR231C.S1 Protein of unknown function, component of the Swr1p complex that incorporates Htz1p into chromatin 5.96806466936289 82.0695991516113 427.504302978516 SWC5 6338 // chromatin remodeling // inferred from direct assay /// 6338 // chromatin remodeling // inferred from physical interaction /// 6338 // chromatin remodeling // inferred from genetic interaction 812 // SWR1 complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay --- 436.228454589844 73.0937881469727 91.04541015625 418.780151367188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR231C /GEN=SWC5 /DB_XREF=GI:6319708 /SEG=NC_001134:-682136,683047 /DEF=Protein of unknown function, component of the Swr1p complex that incorporates Htz1p into chromatin /NOTE=Swc5p; go_component: SWR1 complex [goid GO:0000812] [evidence IPI] [pmid 14690608]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 14645854]; go_process: chromatin remodeling [goid GO:0006338] [evidence IGI,IPI] [pmid 14690608] --- --- --- --- --- --- S0000435 // SWC5 SGDID:S0000435, Chr II from 683085-682174, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000021323 // cdna:Genscan chromosome:SGD1:II:682174:683085:-1 // ensembl // 10 // --- /// GENEFINDER00000022218 // cdna:GeneFinder chromosome:SGD1:II:682174:683085:-1 // ensembl // 10 // --- /// YBR231C // cdna:known chromosome:SGD1:II:682174:683085:-1 gene:YBR231C // ensembl // 10 // --- --- No cerevisiae_gene -3.54829105955927 -5.96806466936289 -1.49101920265611 -4.79132834748285 -1.04166458979895 Max fold change at or above threshold 4 5.96806466936289 Max fold change at or above threshold 0.908577144929671 -0.909837341569508 -0.819943722109844 0.821203918749681 254.786951065063 199.698511609407 0.783786260538954 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776585_at SPAC4F8.04.S1 --- 5.96754154877843 --- --- --- --- 0.821330964565277 4.90132665634155 1.02706813812256 0.836009621620178 0.805419981479645 0.432372987270355 0.665526986122131 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F8.04 /DEF=involved in RNA processing --- --- --- --- --- --- SPAC4F8.04 // |||Brix domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 2.39196722528523 5.96754154877843 1.39410131478695 1.2504924110175 1.0178717930873 Max fold change at or above threshold 1 5.96754154877843 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770714_at SPBC29A3.14c.S1 --- 5.96688102824271 --- --- --- --- 1.72474908828735 3.79684019088745 3.73886466026306 1.65451490879059 0.805419981479645 0.533936023712158 0.466064006090164 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A3.14c /GEN=trt1 /DEF=telomerase catalytic subunit (PMID 9774280) --- --- --- --- --- --- SPBC29A3.14c // |trt1||telomerase reverse transcriptase 1 protein Trt1 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.96688102824271 2.20138698241473 -3.59204554581326 2.16777308980965 -1.04245001306643 Max fold change at or above threshold 2 5.96688102824271 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776789_at SPCC1235.03.S1 --- 5.96429350243362 --- --- --- --- 7.07516574859619 6.2167649269104 4.31218385696411 1.18625378608704 0.0375977009534836 0.366210997104645 0.219482004642487 0.567627012729645 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1235.03 /DEF=smr domain protein (small muts related protein) --- --- --- --- --- --- D89171 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0720. // gb // 9 // --- /// SPCC1235.03 // |||smr domain protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.09720577949491 -1.13807837867088 -4.30913832251078 -1.64073842472415 -5.96429350243362 Max fold change at or above threshold 3 5.96429350243362 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1773361_at YPL024W.S1 Involved in response to DNA damage; null mutants have increased rates of recombination and delayed S phase; interacts physically and genetically with Sgs1p (RecQ family member) and Top3p (topoisomerase III) 5.96264280648754 726.582427978516 195.683456420898 RMI1 6974 // response to DNA damage stimulus // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 31422 // RecQ helicase-Topo III complex // inferred from physical interaction --- 177.466186523438 636.109191894531 817.0556640625 213.900726318359 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL024W /GEN=NCE4 /DB_XREF=GI:6325233 /SEG=NC_001148:+503513,504238 /DEF=involved in cell separation /NOTE=Nce4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005945 // NCE4 SGDID:S0005945, Chr XVI from 503515-504240, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020831 // cdna:GeneFinder chromosome:SGD1:XVI:503515:504240:1 // ensembl // 11 // --- /// YPL024W // cdna:known chromosome:SGD1:XVI:503515:504240:1 gene:YPL024W // ensembl // 11 // --- --- No cerevisiae_gene 5.96264280648754 3.58439657917888 1.30338309248227 4.60400755810794 1.20530412304831 Max fold change at or above threshold 4 5.96264280648754 Max fold change at or above threshold -0.898699777699195 0.55435158881585 1.12761775786384 -0.783269568980493 461.132942199707 315.641288353824 0.684490869049921 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771345_at SPCC645.08c.S1 --- 5.96153345574887 --- --- --- --- 1.10553228855133 6.59066772460938 5.05208015441895 4.41535091400146 0.725830018520355 0.24609400331974 0.533936023712158 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC645.08c /DEF=RNA-binding protein --- --- --- --- --- --- AB108422 // Schizosaccharomyces pombe SN4TDR mRNA for 4SNc-TUDOR domain protein, complete cds. // gb // 11 // --- /// SPCC645.08c // |snd1||RNA-binding protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.62381627625134 5.96153345574887 -5.41561174150447 4.56981691691619 3.99386879942445 Max fold change at or above threshold 3 5.96153345574887 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773852_at SPBC25H2.06c.S1 --- 5.9594218761409 --- --- --- --- 1.31915378570557 1.52670443058014 0.258591622114182 3.5827043056488 0.725830018520355 0.696289002895355 0.696289002895355 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25H2.06c /GEN=hrf1 /DEF=involved in intracellular protein transport (predicted) --- --- --- --- --- --- SPBC25H2.06c // |hrf1||COPII-coated vesicle component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.97085921171632 1.15733620077022 5.9594218761409 -5.10130132956547 2.71591102149819 Max fold change at or above threshold 1 5.9594218761409 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773213_at SPAC110.04c.S1 --- 5.95885637898284 --- --- --- --- 1.21315634250641 1.81592130661011 7.2290244102478 1.23202061653137 0.567627012729645 0.633789002895355 0.219482004642487 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC110.04c /GEN=pss1 /DEF=heat shock protein 70 family --- --- --- --- --- --- U59434 // Schizosaccharomyces pombe Pss1 (pss1) mRNA, complete cds. // gb // 10 // --- /// SPAC110.04c // |pss1|ssp1, SPAP14E8.01c|heat shock protein 70 family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.44109859656767 1.49685678834961 5.68969585699402 5.95885637898284 1.01554974685784 Max fold change at or above threshold 1 5.95885637898284 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777835_at SPAPB17E12.03.S1 --- 5.95815545813261 --- --- --- --- 0.564812362194061 1.48355710506439 3.19991183280945 3.36523985862732 0.870360970497131 0.780517995357513 0.601073980331421 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB17E12.03 /DEF=zinc finger protein --- --- --- --- --- --- SPAPB17E12.03 // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.49216944606901 2.62663709997669 1.26229247658738 5.6654422725082 5.95815545813261 Max fold change at or above threshold 2 5.95815545813261 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779634_at SPAC19G12.12.S1 --- 5.9575840211817 --- --- --- --- 1.76834321022034 0.558105826377869 8.14879417419434 10.5350532531738 0.5 0.533936023712158 0.129638999700546 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19G12.12 /GEN=dlp1 /DEF=decaprenyl diphosphate synthase (subunit 2) (PMID 14519123) --- --- --- --- --- --- SPAC19G12.12 // |dlp1||decaprenyl diphosphate synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.44835929609521 -3.16847294302043 -1.00338537444376 4.60815192836858 5.9575840211817 Max fold change at or above threshold 2 5.9575840211817 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773576_at SPAC1F7.09c.S1 --- 5.95462018692901 --- --- --- --- 2.76590037345886 6.53017282485962 9.55781555175781 0.464496523141861 0.696289002895355 0.567627012729645 0.432372987270355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F7.09c /DEF=allantoicase (predicted) --- --- --- --- --- --- SPAC1F7.09c // |||allantoicase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.85502192329876 2.36095735317227 -3.15914320455949 3.45558923360837 -5.95462018692901 Max fold change at or above threshold 3 5.95462018692901 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772754_at SPAC1002.19.S1 --- 5.95339393972821 --- --- --- --- 13.6396322250366 8.68712711334229 13.0788269042969 2.29106831550598 0.274170011281967 0.457763671875 0.16552734375 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1002.19 /DEF=GTP cyclohydrolase (predicted) --- --- --- --- --- --- SPAC1002.19 // |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.73267124740609 -1.57009700066296 -2.65211681137187 -1.04287887016499 -5.95339393972821 Max fold change at or above threshold 3 5.95339393972821 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772561_at SPCC417.03.S1 --- 5.95070166678648 --- --- --- --- 2.94515419006348 10.3312005996704 17.5257339477539 4.65312099456787 0.466064006090164 0.219482004642487 0.014160200022161 0.0461426004767418 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC417.03 /DEF=sequence orphan --- --- --- --- --- --- SPCC417.03 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.98274862720184 3.5078640821341 1.7692889556372 5.95070166678648 1.57992440948146 Max fold change at or above threshold 4 5.95070166678648 Max fold change at or above threshold AMAAPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1777246_at SPBP8B7.23.S1 --- 5.94795610805805 --- --- --- --- 1.15586340427399 6.87502479553223 5.43129920959473 0.475369244813919 0.665526986122131 0.366210997104645 0.274170011281967 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.23 /DEF=zinc finger protein --- --- --- --- --- --- SPBP8B7.23 // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.2649647369383 5.94795610805805 2.66199027751923 4.6989109522039 -2.43150649076266 Max fold change at or above threshold 2 5.94795610805805 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772178_at SPAC5H10.05c.S1 --- 5.94122598781188 --- --- --- --- 8.04170227050781 3.23302388191223 3.92975759506226 3.49078488349915 0.274170011281967 0.665526986122131 0.366210997104645 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5H10.05c /DEF=NADHdh_2 domain protein --- --- --- --- --- --- SPAC5H10.05c // |||NADHdh_2 domain protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.93204483014647 -2.48736247062654 -5.94122598781188 -2.0463608952909 -2.30369459559675 Max fold change at or above threshold 4 5.94122598781188 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770522_at SPBC106.17c.S1 --- 5.94035840803262 --- --- --- --- 2.38381385803223 6.32973432540894 4.77693128585815 1.86233627796173 0.5 0.567627012729645 0.696289002895355 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC106.17c /DEF=homoserine O-acetyltransferase (predicted) --- --- --- --- --- --- SPBC106.17c // |||homoserine O-acetyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.94035840803262 2.65529722636731 -1.7698437072682 2.00390280883818 -1.28001257680554 Max fold change at or above threshold 2 5.94035840803262 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769517_at SPAC9E9.07c.S1 --- 5.93818790783191 --- --- --- --- 7.56475687026978 7.72856616973877 6.38908100128174 3.74316024780273 0.194580003619194 0.567627012729645 0.366210997104645 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9E9.07c /GEN=ypt2 /DEF=GTPase (PMID 2328721) --- --- --- --- --- --- SPAC9E9.07c // |ypt2||GTPase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.36817682965787 1.02165427154874 -5.93818790783191 -1.1840132984309 -2.02095458635797 Max fold change at or above threshold 4 5.93818790783191 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770274_at SPAC1610.02c.S1 --- 5.93584516764133 --- --- --- --- 14.284330368042 6.51805973052979 3.96713805198669 3.61009669303894 0.432372987270355 0.780517995357513 0.888427972793579 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1610.02c /DEF=mitochondrial ribosomal protein L1 --- --- --- --- --- --- SPAC1610.02c // |||mitochondrial ribosomal protein L1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.93584516764133 -2.19150037873019 -1.95294087428302 -3.60066379865167 -3.95677223703878 Max fold change at or above threshold 4 5.93584516764133 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776756_at SPAC11E3.09.S1 --- 5.93392197518209 --- --- --- --- 0.997316181659698 5.91799640655518 2.24134588241577 4.65044689178467 0.633789002895355 0.303710997104645 0.633789002895355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11E3.09 /GEN=pyp3 /DEF=protein-tyrosine phosphatase --- --- --- --- --- --- SPAC11E3.09 // |pyp3||protein-tyrosine phosphatase Pyp3|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.18959161749786 5.93392197518209 1.17608473105342 2.24737743519392 4.66296143319921 Max fold change at or above threshold 2 5.93392197518209 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769923_at SPBC83.07.S1 --- 5.93289063873783 --- --- --- --- 0.796901524066925 2.26737761497498 4.72792959213257 0.28559085726738 0.665526986122131 0.665526986122131 0.0805663987994194 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC83.07 /GEN=ecm5 /DEF=transcription factor --- --- --- --- --- --- SPBC83.07 // |jmj3||Lid2 complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.74514197643658 2.84524191069882 1.17839286768101 5.93289063873783 -2.79036076887027 Max fold change at or above threshold 1 5.93289063873783 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775200_at SPAC2E1P5.05.S1 --- 5.93049102640047 --- --- --- --- 1.26580834388733 7.50686502456665 1.95967257022858 5.32005643844604 0.725830018520355 0.334473013877869 0.665526986122131 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2E1P5.05 /DEF=U3 snoRNP associated (predicted) --- --- --- --- --- --- SPAC2E1P5.05 // |||U3 snoRNP associated |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.43720345024707 5.93049102640047 1.57823601927603 1.54815899238772 4.2028925343532 Max fold change at or above threshold 2 5.93049102640047 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774562_at SPCC962.02c.S1 --- 5.92967387043202 --- --- --- --- 1.29622399806976 7.46025800704956 0.443725734949112 0.218599542975426 0.725830018520355 0.533936023712158 0.753906011581421 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC962.02c /GEN=cut17 /DEF=survivin --- --- --- --- --- --- AB031034 // Schizosaccharomyces pombe cut17+ mRNA for Cut17, complete cds. // gb // 11 // --- /// SPCC962.02c // |bir1|cut17, pbh1, SPCP31B10.10c|survivin|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.95971500360656 5.75537717104359 -1.90719990430249 -2.92122790267826 -5.92967387043202 Max fold change at or above threshold 1 5.92967387043202 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779537_at SPAC10F6.14c.S1 --- 5.92756503746156 --- --- --- --- 1.64774692058563 8.59543418884277 1.03354871273041 1.42350947856903 0.725830018520355 0.366210997104645 0.892578125 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC10F6.14c /DEF=ABC1 family --- --- --- --- --- --- SPAC10F6.14c // |||ABC1 family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.16643782154103 5.21647716737218 5.92756503746156 -1.59426149952105 -1.15752437577164 Max fold change at or above threshold 1 5.92756503746156 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776497_at SPBC1826.01c.S1 --- 5.92709824031495 --- --- --- --- 1.01185476779938 5.99736261367798 1.74472832679749 5.77324438095093 0.725830018520355 0.753906011581421 0.753906011581421 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1826.01c /DEF=chromatin remodeling complex (predicted) --- --- --- --- --- --- SPBC1826.01c // |mot1||TATA-binding protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.73679974954882 5.92709824031495 3.10239580266523 1.72428730122208 5.70560574963422 Max fold change at or above threshold 2 5.92709824031495 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770047_at YHR065C.S1 Protein involved in rRNA processing; required for maturation of the 35S primary transcript of pre-rRNA and for cleavage leading to mature 18S rRNA; homologous to eIF-4a, which is a DEAD box RNA-dependent ATPase with helicase activity 5.92662916115739 63.4435863494873 334.280532836914 RRP3 6365 // 35S primary transcript processing // traceable author statement 5730 // nucleolus // traceable author statement 4004 // ATP-dependent RNA helicase activity // traceable author statement 317.060394287109 73.3895797729492 53.4975929260254 351.500671386719 0.000244141003349796 0.00585938012227416 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR065C /GEN=RRP3 /DB_XREF=GI:37362659 /SEG=NC_001140:-227533,229038 /DEF=Required for maturation of the 35S primary transcript of pre-rRNA and is required for cleavages leading to mature 18S RNA /NOTE=Rrp3p; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 10690410]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0001107 // RRP3 SGDID:S0001107, Chr VIII from 229038-227533, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016610 // cdna:Genscan chromosome:SGD1:VIII:227533:229038:-1 // ensembl // 11 // --- /// GENEFINDER00000020310 // cdna:GeneFinder chromosome:SGD1:VIII:227533:229164:-1 // ensembl // 11 // --- /// YHR065C // cdna:known chromosome:SGD1:VIII:227533:229038:-1 gene:YHR065C // ensembl // 11 // --- --- No cerevisiae_gene 2.25211727105468 -4.3202372226142 -1.52367839192885 -5.92662916115739 1.10862371245405 Max fold change at or above threshold 4 5.92662916115739 Max fold change at or above threshold 0.751857017312036 -0.798127695087235 -0.924660187595433 0.970930865370632 198.862059593201 157.208527648621 0.790540578581012 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1779983_at SPAC823.02.S1 --- 5.92380080485362 --- --- --- --- 1.39146244525909 1.13658726215363 8.24274635314941 3.45909762382507 0.665526986122131 0.753906011581421 0.0375977009534836 0.219482004642487 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC823.02 /DEF=sequence orphan --- --- --- --- --- --- SPAC823.02 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 3.62797062103505 -1.22424603160036 3.54947181962835 5.92380080485362 2.48594393302579 Max fold change at or above threshold 2 5.92380080485362 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1772262_at SPAC1751.03.S1 --- 5.92091888203047 --- --- --- --- 0.330585539340973 1.95737016201019 0.220750391483307 0.347146838903427 0.805419981479645 0.601073980331421 0.932372987270355 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1751.03 /GEN=csn72 /DEF=COP9signalosome complex (subunit 7b) --- --- --- --- --- --- AB016218 // Schizosaccharomyces pombe mRNA, partial cds, similar to human GA17 protein. // gb // 11 // --- /// SPAC1751.03 // ||SPAC31A2.01|eukaryotic translation initiation factor eIF3m |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.29817581254547 5.92091888203047 2.16114368034214 -1.49755358130802 1.05009686629206 Max fold change at or above threshold 0 5.92091888203047 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770286_at SPBC106.13.S1 --- 5.92038740681007 --- --- --- --- 8.23380661010742 1.39075469970703 11.1866455078125 6.79285764694214 0.5 0.601073980331421 0.0805663987994194 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC106.13 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC106.13 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.79811567827172 -5.92038740681007 -1.2927319340845 1.35862378575668 -1.21212706611244 Max fold change at or above threshold 3 5.92038740681007 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776316_at SPCC16A11.07.S1 --- 5.91546064505956 --- --- --- --- 1.07954466342926 1.61900758743286 1.00955653190613 1.12846148014069 0.633789002895355 0.665526986122131 0.82275390625 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16A11.07 /DEF=conserved protein (broad species distribution) --- --- --- --- --- --- SPCC16A11.07 // |||conserved protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 5.91546064505956 1.49971339054185 4.58847884086765 -1.06932561903293 1.04531245289661 Max fold change at or above threshold 0 5.91546064505956 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778799_at SPAC1F8.06.S1 --- 5.91036131465147 --- --- --- --- 1.79450380802155 4.03721904754639 10.6061658859253 4.93848943710327 0.725830018520355 0.633789002895355 0.334473013877869 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F8.06 /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPAC1F8.06 // |fta5|sma5|kinetochore associated protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.06150887351679 2.24976900550434 -1.91388003945138 5.91036131465147 2.75200833513304 Max fold change at or above threshold 3 5.91036131465147 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773434_at YPL106C.S1 ATPase that is a component of the heat shock protein Hsp90 chaperone complex; binds unfolded proteins; member of the heat shock protein 70 (HSP70) family; localized to the cytoplasm 5.90491650647033 5616.48559570313 1120.48376464844 SSE1 6457 // protein folding // inferred from mutant phenotype 5737 // cytoplasm // inferred from curator 5524 // ATP binding // inferred from direct assay /// 5524 // ATP binding // inferred from mutant phenotype /// 51082 // unfolded protein binding // inferred from mutant phenotype 1104.20788574219 6520.25537109375 4712.7158203125 1136.75964355469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL106C /GEN=SSE1 /DB_XREF=GI:6325151 /SEG=NC_001148:-350189,352270 /DEF=HSP70 family member, highly homologous to Ssa1p and Sse2p /NOTE=Sse1p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 10480867]; go_function: co-chaperone activity [goid GO:0003767] [evidence IMP] [pmid 10480867]; go_process: protein folding [goid GO:0006457] [evidence IMP] [pmid 10480867] --- --- --- --- --- --- S0006027 // SSE1 SGDID:S0006027, Chr XVI from 352272-350191, reverse complement, Verified ORF // sgd // 10 // --- /// D13319 // Saccharomyces cerevisiae mRNA for SSE1 protein, complete cds. // gb // 10 // --- /// D38368 // Saccharomyces cerevisiae mRNA for Sse1 protein, complete cds. // gb // 10 // --- /// GENSCAN00000017109 // cdna:Genscan chromosome:SGD1:XVI:350191:352272:-1 // ensembl // 10 // --- /// GENEFINDER00000020718 // cdna:GeneFinder chromosome:SGD1:XVI:350191:352272:-1 // ensembl // 10 // --- /// YPL106C // cdna:known chromosome:SGD1:XVI:350191:352272:-1 gene:YPL106C // ensembl // 10 // --- --- No cerevisiae_gene 2.81583356281695 5.90491650647033 1.17816047035096 4.26796066317247 1.02947973677132 Max fold change at or above threshold 4 5.90491650647033 Max fold change at or above threshold -0.83904004795288 1.16790572519461 0.498112140288132 -0.826977817529862 3368.48468017578 2698.65163165698 0.801147069938925 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773155_at SPCP1E11.11.S1 --- 5.90275108262165 --- --- --- --- 2.06736612319946 2.20634722709656 1.62435567378998 3.47969126701355 0.533936023712158 0.888427972793579 0.870360970497131 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP1E11.11 /DEF=RNA-binding protein --- --- --- --- --- --- SPCP1E11.11 // |||RNA-binding protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.90275108262165 1.06722616876492 -1.04045982401427 -1.27272995474929 1.68315192358302 Max fold change at or above threshold 1 5.90275108262165 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769912_at SPBP8B7.27.S1 --- 5.90191684631128 --- --- --- --- 0.882483780384064 0.182818055152893 1.19613087177277 3.9685263633728 0.696289002895355 0.466064006090164 0.696289002895355 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.27 /DEF=ubiquitin-protein ligase (E3) --- --- --- --- --- --- SPBP8B7.27 // |||ubiquitin-protein ligase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.60142502634641 -4.82711502234301 5.90191684631128 1.35541400120941 4.49699637725429 Max fold change at or above threshold 1 5.90191684631128 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772143_at SPAC23D3.03c.S1 --- 5.89862722108533 --- --- --- --- 0.661288261413574 3.9006929397583 1.23661673069 1.81323850154877 0.943848013877869 0.633789002895355 0.725830018520355 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23D3.03c /DEF=GTPase activating protein (predicted) --- --- --- --- --- --- SPAC23D3.03c // |||GTPase activating protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.39997094075519 5.89862722108533 4.84445191956863 1.87001161648719 2.74197896341419 Max fold change at or above threshold 1 5.89862722108533 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776304_at YDR256C.S1 Catalase A, breaks down hydrogen peroxide in the peroxisomal matrix formed by acyl-CoA oxidase (Pox1p) during fatty acid beta-oxidation 5.89695478502352 2306.81677246094 450.405349731445 CTA1 6800 // oxygen and reactive oxygen species metabolism // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5782 // peroxisomal matrix // traceable author statement 4096 // catalase activity // traceable author statement 399.48046875 2355.71826171875 2257.91528320313 501.330230712891 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR256C /GEN=CTA1 /DB_XREF=GI:6320462 /SEG=NC_001136:-968125,969672 /DEF=Catalase A, breaks down hydrogen peroxide in the peroxisomal matrix formed by acyl-CoA oxidase (Pox1p) during fatty acid beta-oxidation /NOTE=Cta1p; go_component: peroxisomal matrix [goid GO:0005782] [evidence TAS]; go_function: catalase activity [goid GO:0004096] [evidence TAS]; go_process: oxygen and reactive oxygen species metabolism [goid GO:0006800] [evidence TAS] --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 4.09999990463257 --- S0002664 // CTA1 SGDID:S0002664, Chr IV from 969674-968127, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023866 // cdna:GeneFinder chromosome:SGD1:IV:968127:969674:-1 // ensembl // 11 // --- /// GENSCAN00000025296 // cdna:Genscan chromosome:SGD1:IV:968127:969674:-1 // ensembl // 11 // --- /// YDR256C // cdna:known chromosome:SGD1:IV:968127:969674:-1 gene:YDR256C // ensembl // 11 // --- --- No cerevisiae_gene -2.2531992115458 5.89695478502352 1.57028950565676 5.65212935257708 1.25495554834404 Max fold change at or above threshold 4 5.89695478502352 Max fold change at or above threshold -0.912220348609958 0.91033522815929 0.81921575149905 -0.817330631048382 1378.61106109619 1073.34877350433 0.778572582067393 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776828_at YIL169C.S1 Hypothetical protein 5.89588898647323 275.467346191406 73.0851669311523 --- --- --- --- 61.7468566894531 186.882080078125 364.052612304688 84.4234771728516 0.000244141003349796 0.00122069998178631 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL169C /GEN=VTH1 /DB_XREF=GI:6322022 /SEG=NC_001141:-23119,26106 /DEF=Hypothetical ORF /NOTE=Yil169cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001431 // YIL169C SGDID:S0001431, Chr IX from 26106-23119, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016347 // cdna:Genscan chromosome:SGD1:IX:23119:26106:-1 // ensembl // 11 // --- /// GENEFINDER00000019051 // cdna:GeneFinder chromosome:SGD1:IX:23119:26106:-1 // ensembl // 11 // --- /// YIL169C // cdna:known chromosome:SGD1:IX:23119:26106:-1 gene:YIL169C // ensembl // 11 // --- S0005515 // sgd // 1 // Cross Hyb Matching Probes /// GENSCAN00000017346 // ensembl // 1 // Cross Hyb Matching Probes /// GENEFINDER00000022849 // ensembl // 1 // Cross Hyb Matching Probes /// YOL155C // ensembl // 1 // Cross Hyb Matching Probes No cerevisiae_gene 4.17552528738643 3.02658451130592 -1.25571820084378 5.89588898647323 1.36725141487683 Max fold change at or above threshold 4 5.89588898647323 Max fold change at or above threshold -0.817016757956126 0.0915242511986324 1.3778662561323 -0.652373749374808 174.276256561279 137.732058462709 0.790308795818548 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780003_at SPAC8E11.06.S1 --- 5.89346459853188 --- --- --- --- 0.321075558662415 1.89224743843079 0.277355253696442 0.196907669305801 0.932372987270355 0.753906011581421 0.850341975688934 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8E11.06 /DEF=hypothetical protein --- --- --- --- --- --- SPAC8E11.06 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.01798300052314 5.89346459853188 -2.72995515728588 -1.15763287114014 -1.63058940159298 Max fold change at or above threshold 0 5.89346459853188 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769477_at SPCC5E4.10c.S1 --- 5.88986775103584 --- --- --- --- 6.63970422744751 7.35630941390991 9.64531803131104 2.13278722763062 0.219482004642487 0.194580003619194 0.0239257998764515 0.533936023712158 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC5E4.10c /DEF=sequence orphan --- --- --- --- --- --- SPCC5E4.10c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -1.77493410664351 1.10792727535966 -5.88986775103584 1.45267284519072 -3.11315828481577 Max fold change at or above threshold 3 5.88986775103584 Max fold change at or above threshold AMAAPA No 4 0 AAPA 3 1 0 No No x = 1
1778789_at YNL234W.S1 Similar to globins and has a functional heme-binding domain; involved in glucose signaling or metabolism; regulated by Rgt1p 5.88767205547676 83.7463188171387 479.596878051758 --- 6950 // response to stress // inferred from expression pattern 5737 // cytoplasm // inferred from direct assay 20037 // heme binding // inferred from physical interaction /// 20037 // heme binding // inferred from sequence similarity 423.238372802734 95.6071166992188 71.8855209350586 535.955383300781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL234W /GEN=SIN4 /DB_XREF=GI:6324095 /SEG=NC_001146:+210232,211512 /DEF=Similar to globins and has a functional heme-binding domain; involved in glucose signaling or metabolism; regulated by Rgt1p /NOTE=Ynl234wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: heme binding [goid GO:0020037] [evidence ISS,IPI] [pmid 9988749]; go_process: response to stress [goid GO:0006950] [evidence IEP] [pmid 9988749] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 5.99999978589949E-8 --- S0005178 // YNL234W SGDID:S0005178, Chr XIV from 210232-211512, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019852 // cdna:Genscan chromosome:SGD1:XIV:210280:211512:1 // ensembl // 11 // --- /// YNL234W // cdna:known chromosome:SGD1:XIV:210232:211512:1 gene:YNL234W // ensembl // 11 // --- --- No cerevisiae_gene -2.11963575462574 -4.42685008621532 -1.34475240956209 -5.88767205547676 1.26632039470245 Max fold change at or above threshold 4 5.88767205547676 Max fold change at or above threshold 0.606717995359386 -0.797423476445833 -0.8990880025536 1.08979348364005 281.671598434448 233.332084182586 0.828383427649302 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772382_at SPBC13E7.10c.S1 --- 5.88083254239535 --- --- --- --- 0.95190566778183 5.58295917510986 5.15061569213867 1.30336678028107 0.753906011581421 0.432372987270355 0.194580003619194 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13E7.10c /GEN=brf1 /DEF=transcription factor TFIIIB complex (PMID 12682361) --- --- --- --- --- --- SPBC13E7.10c // |brf1|SPBC30D10.20|transcription factor TFIIIB complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.88083254239535 5.86503407225162 -1.78867230256772 5.41084675348225 1.36921842614744 Max fold change at or above threshold 2 5.88083254239535 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772269_at SPAPB17E12.06.S1 --- 5.88074295368282 --- --- --- --- 1.18013322353363 4.68901252746582 0.671254336833954 5.12468671798706 0.567627012729645 0.030273400247097 0.633789002895355 0.0952147990465164 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB17E12.06 /DEF=possible pseudogene --- --- --- --- --- --- SPAPB17E12.06 // |||possible pseudogene|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 5.88074295368282 3.97329084035587 3.79027028665082 -1.75810145093417 4.34246457585729 Max fold change at or above threshold 2 5.88074295368282 Max fold change at or above threshold APPAAA No 4 0 APAA 3 1 0 No No x = 1
1780121_at SPCC970.07c.S1 --- 5.87616660332855 --- --- --- --- 0.681637406349182 1.48632884025574 1.80053985118866 1.51709711551666 0.904784977436066 0.567627012729645 0.601073980331421 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC970.07c /DEF=sequence orphan --- --- --- --- --- --- SPCC970.07c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.73644073117315 2.18052710489649 5.87616660332855 2.64149213998138 2.22566587658703 Max fold change at or above threshold 0 5.87616660332855 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777900_at SPCC16C4.15.S1 --- 5.87438381626721 --- --- --- --- 0.796962320804596 0.341216027736664 1.49298322200775 0.736927270889282 0.870360970497131 0.780517995357513 0.725830018520355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16C4.15 /GEN=rml2 /DEF=mitochondrial ribosomal protein subunit rml2 --- --- --- --- --- --- SPCC16C4.15 // |rml2||mitochondrial ribosomal protein subunit L2|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.45733575283291 -2.33565324023893 5.87438381626721 1.8733422936488 -1.08146672309042 Max fold change at or above threshold 0 5.87438381626721 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770772_at SPAP14E8.02.S1 --- 5.86705903041286 --- --- --- --- 0.81619119644165 2.75546264648438 1.51359879970551 0.465407073497772 0.828612983226776 0.567627012729645 0.601073980331421 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP14E8.02 /DEF=hypothetical protein --- --- --- --- --- --- SPAP14E8.02 // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.8734299753984 3.37600143017637 5.86705903041286 1.85446597109151 -1.75371463589403 Max fold change at or above threshold 1 5.86705903041286 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779804_at YNL299W.S1 Putative poly (A) polymerase involved in nuclear RNA quality control based on: homology with Trf4p, genetic interactions with TRF4 mutants, and physical interaction with Mtr4p (subunit of TRAMP); disputed role as a sigma DNA polymerase 5.86695388410095 36.9990139007568 216.43692779541 TRF5 7062 // sister chromatid cohesion // inferred from mutant phenotype /// 7062 // sister chromatid cohesion // inferred from genetic interaction /// 16075 // rRNA catabolism // inferred from mutant phenotype /// 16077 // snoRNA catabolism // inferred from genetic interaction 5634 // nucleus // inferred from sequence similarity /// 5730 // nucleolus // inferred from direct assay 3887 // DNA-directed DNA polymerase activity // inferred from sequence similarity /// 4652 // polynucleotide adenylyltransferase activity // inferred from genetic interaction /// 4652 // polynucleotide adenylyltransferase activity // inferred from sequence similarity /// 4652 // polynucleotide adenylyltransferase activity // inferred from mutant phenotype 190.546081542969 32.477855682373 41.5201721191406 242.327774047852 0.000732421991415322 0.219482004642487 0.149657994508743 0.000244141003349796 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL299W /GEN=TRF5 /DB_XREF=GI:6324030 /SEG=NC_001146:+66516,68393 /DEF=TRF4 homolog; TRF4/5 function is required for proper mitosis /NOTE=Trf5p; go_component: nucleus [goid GO:0005634] [evidence ISS] [pmid 10926539]; go_function: DNA-directed DNA polymerase activity [goid GO:0003887] [evidence ISS] [pmid 10926539]; go_process: sister chromatid cohesion [goid GO:0007062] [evidence IGI,IMP] [pmid 10926539] --- --- --- --- --- --- S0005243 // TRF5 SGDID:S0005243, Chr XIV from 66516-68393, Verified ORF // sgd // 11 // --- /// GENSCAN00000019800 // cdna:Genscan chromosome:SGD1:XIV:66516:68393:1 // ensembl // 11 // --- /// GENEFINDER00000020587 // cdna:GeneFinder chromosome:SGD1:XIV:66516:68393:1 // ensembl // 11 // --- /// YNL299W // cdna:known chromosome:SGD1:XIV:66516:68393:1 gene:YNL299W // ensembl // 11 // --- --- No cerevisiae_gene -2.11809422492582 -5.86695388410095 -1.24401340562002 -4.5892411282931 1.27175417140869 Max fold change at or above threshold 4 5.86695388410095 Max fold change at or above threshold 0.603302860545916 -0.890756916328493 -0.805289003948307 1.09274305973088 126.717970848084 105.797792235112 0.83490756304761 PPAPAP Called_P_>2EXP 2 0 PAAP 2 2 0 Yes No 1 < x = 2
1776653_at SPBC26H8.01.S1 --- 5.86548644512208 --- --- --- --- 9.63431835174561 9.7768030166626 7.00069665908813 2.99163055419922 0.129638999700546 0.334473013877869 0.274170011281967 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC26H8.01 /GEN=thi2 /DEF=thiazole biosynthetic enzyme --- --- --- --- --- --- SPBC26H8.01 // |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.86548644512208 1.01478928344642 -5.24313420346821 -1.37619423050398 -3.22042383817158 Max fold change at or above threshold 4 5.86548644512208 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779162_at SPAC3C7.09.S1 --- 5.8615818275807 --- --- --- --- 0.345506101846695 0.522189497947693 0.98390531539917 2.02521228790283 0.981445014476776 0.991943001747131 0.888427972793579 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3C7.09 /DEF=histone lysine methyltransferase (predicted) --- --- --- --- --- --- SPAC3C7.09 // |set8||histone lysine methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.51634522849093 1.51137561726593 2.20718726163415 2.84772196537281 5.8615818275807 Max fold change at or above threshold 0 5.8615818275807 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773096_at YLR081W.S1 Galactose permease, required for utilization of galactose; also able to transport glucose 5.86061734206741 650.695053100586 165.879501342773 GAL2 6012 // galactose metabolism // traceable author statement /// 6859 // extracellular carbohydrate transport // traceable author statement 5886 // plasma membrane // non-traceable author statement 5354 // galactose transporter activity // traceable author statement /// 5355 // glucose transporter activity // inferred from direct assay 148.035018920898 806.036071777344 495.354034423828 183.723983764648 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR081W /GEN=GAL2 /DB_XREF=GI:6323110 /SEG=NC_001144:+290213,291937 /DEF=Galactose permease, required for utilization of galactose; also able to transport glucose /NOTE=Gal2p; go_component: plasma membrane [goid GO:0005886] [evidence NAS] [pmid 3082856]; go_function: galactose transporter activity [goid GO:0005354] [evidence TAS] [pmid 7601342]; go_function: glucose transporter activity [goid GO:0005355] [evidence IDA] [pmid 12702270]; go_process: extracellular carbohydrate transport [goid GO:0006859] [evidence TAS] [pmid 7601342]; go_process: galactose metabolism [goid GO:0006012] [evidence TAS] [pmid 7601342] --- --- --- --- --- S0004071 // span:68-87,116-138,151-170,176-198,210-232,242-264,331-353,368-387,396-415,435-457,470-492,496-518 // numtm:12 S0004071 // GAL2 SGDID:S0004071, Chr XII from 290213-291937, Verified ORF // sgd // 11 // --- /// GENSCAN00000017880 // cdna:Genscan chromosome:SGD1:XII:290213:291937:1 // ensembl // 11 // --- /// GENEFINDER00000024857 // cdna:GeneFinder chromosome:SGD1:XII:290213:291937:1 // ensembl // 11 // --- /// YLR081W // cdna:known chromosome:SGD1:XII:290213:291937:1 gene:YLR081W // ensembl // 11 // --- --- No cerevisiae_gene 5.86061734206741 5.44490133248839 -1.01206788149437 3.34619496139976 1.24108461027603 Max fold change at or above threshold 4 5.86061734206741 Max fold change at or above threshold -0.845937545509573 1.29286347481735 0.283006339172436 -0.729932268480211 408.28727722168 307.649494554602 0.753512322617793 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770185_at SPAC1B3.05.S1 --- 5.85925505565372 --- --- --- --- 1.99424636363983 1.18051743507385 4.76555252075195 1.51082265377045 0.696289002895355 0.888427972793579 0.633789002895355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B3.05 /DEF=CCR4-Not complex (predicted) --- --- --- --- --- --- SPAC1B3.05 // |||CCR4-Not complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.85925505565372 -1.68929852655253 2.32849435687868 2.38965085138931 -1.31997382926642 Max fold change at or above threshold 1 5.85925505565372 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776031_at SPAC1565.08.S1 --- 5.85619164835535 --- --- --- --- 5.63641119003296 10.372709274292 5.69898986816406 0.970130801200867 0.601073980331421 0.398925989866257 0.466064006090164 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1565.08 /GEN=cdc48 /DEF=AAA family ATPase --- --- --- --- --- --- SPAC1565.08 // |cdc48|SPAC6F12.01|AAA family ATPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.84750718287223 1.84030386083868 -5.85619164835535 1.01110257502891 -5.80994973364002 Max fold change at or above threshold 3 5.85619164835535 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773403_at SPBC12D12.03.S1 --- 5.8556238779545 --- --- --- --- 1.64725196361542 0.492199271917343 0.67833286523819 2.70715570449829 0.850341975688934 0.981445014476776 0.943848013877869 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12D12.03 /GEN=cct1 /DEF=chaperonin-containing T-complex --- --- --- --- --- --- SPBC12D12.03 // |cct1||chaperonin-containing T-complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -5.8556238779545 -3.34671759508829 -5.44655390883428 -2.42838294888897 1.64343753371924 Max fold change at or above threshold 1 5.8556238779545 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776932_at SPCC1672.03c.S1 --- 5.85084088462462 --- --- --- --- 1.52207803726196 0.260146886110306 2.52742195129395 0.788232028484344 0.398925989866257 0.969726979732513 0.665526986122131 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1672.03c /DEF=guanine deaminase (predicted) --- --- --- --- --- --- SPCC1672.03c // |||guanine deaminase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.65335007197976 -5.85084088462462 -5.16877393428151 1.66050747032687 -1.93100252496552 Max fold change at or above threshold 1 5.85084088462462 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776306_at SPCC1672.05c.S1 --- 5.8493193920186 --- --- --- --- 2.72130441665649 3.16172742843628 0.882607579231262 1.65167963504791 0.696289002895355 0.850341975688934 0.753906011581421 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1672.05c /DEF=tyrosine-tRNA ligase (predicted) --- --- --- --- --- --- SPCC1672.05c // |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -5.8493193920186 1.16184261087589 -1.19887699859609 -3.08325520955384 -1.64759821391002 Max fold change at or above threshold 2 5.8493193920186 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774494_at SPBC16H5.05c.S1 --- 5.84770757658419 --- --- --- --- 1.05428993701935 4.94073581695557 6.16517925262451 4.90309238433838 0.828612983226776 0.334473013877869 0.24609400331974 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16H5.05c /GEN=cyp7 /DEF=cyclophilin --- --- --- --- --- --- SPBC16H5.05c // |cyp7|cwf27|cyclophilin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.40074796625639 4.68631601561506 4.3159443805281 5.84770757658419 4.65061100573551 Max fold change at or above threshold 3 5.84770757658419 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1773809_at YNL065W.S1 Plasma membrane transporter of the major facilitator superfamily that confers resistance to short-chain monocarboxylic acids and quinidine 5.84770594168058 222.598037719727 116.318321228027 AQR1 15718 // monocarboxylic acid transport // inferred from mutant phenotype /// 15893 // drug transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay 8028 // monocarboxylic acid transporter activity // inferred from mutant phenotype /// 15238 // drug transporter activity // inferred from mutant phenotype 104.451538085938 187.340606689453 257.85546875 128.185104370117 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL065W /GEN=AQR1 /DB_XREF=GI:6324264 /SEG=NC_001146:+503723,505483 /DEF=Plasma membrane transporter of the major facilitator superfamily that confers resistance to short-chain monocarboxylic acids and quinidine /NOTE=Aqr1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 11922628]; go_function: drug transporter activity [goid GO:0015238] [evidence IMP] [pmid 11922628]; go_function: monocarboxylic acid transporter activity [goid GO:0008028] [evidence IMP] [pmid 11922628]; go_process: drug transport [goid GO:0015893] [evidence IMP] [pmid 11922628]; go_process: monocarboxylic acid transport [goid GO:0015718] [evidence IMP] [pmid 11922628] --- --- --- --- --- S0005009 // span:100-122,137-159,166-188,192-214,227-249,254-276,336-358,373-395,432-454,521-543 // numtm:10 S0005009 // AQR1 SGDID:S0005009, Chr XIV from 503723-505483, Verified ORF // sgd // 11 // --- /// GENSCAN00000019981 // cdna:Genscan chromosome:SGD1:XIV:503723:505483:1 // ensembl // 11 // --- /// GENEFINDER00000020430 // cdna:GeneFinder chromosome:SGD1:XIV:503723:505483:1 // ensembl // 11 // --- /// YNL065W // cdna:known chromosome:SGD1:XIV:503723:505483:1 gene:YNL065W // ensembl // 11 // --- --- No cerevisiae_gene 5.84770594168058 1.79356484473516 -1.11857917840511 2.46866128996444 1.22722084058401 Max fold change at or above threshold 4 5.84770594168058 Max fold change at or above threshold -0.949459405757573 0.261183139985356 1.29109327839016 -0.602817012617941 169.458179473877 68.4670044803766 0.404034816690163 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772708_at SPBC19F8.06c.S1 --- 5.83911518567082 --- --- --- --- 3.35694265365601 0.628861606121063 5.07684135437012 2.64013504981995 0.805419981479645 0.884033203125 0.725830018520355 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19F8.06c /GEN=meu22 /DEF=meiotic expression upregulated --- --- --- --- --- --- SPBC19F8.06c // |meu22||meiotic expression upregulated|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.83911518567082 -5.33812626018348 -2.16773546924495 1.51234080476203 -1.2715041428979 Max fold change at or above threshold 3 5.83911518567082 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777067_at SPCC1223.10c.S1 --- 5.83719417248391 --- --- --- --- 6.38322591781616 1.64073240756989 1.0935435295105 2.09614133834839 0.753906011581421 0.870360970497131 0.870360970497131 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1223.10c /DEF=dubious --- --- --- --- --- --- SPCC1223.10c // |||dubious|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.58307130327713 -3.8904734790181 -3.98464791079084 -5.83719417248391 -3.04522686568726 Max fold change at or above threshold 1 5.83719417248391 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775685_at SPBC1A4.01.S1 --- 5.83713074160801 --- --- --- --- 3.3084282875061 10.2987785339355 0.566790163516998 3.22889137268066 0.5 0.303710997104645 0.696289002895355 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1A4.01 /GEN=apc10 /DEF=anaphase-promoting complex (APC) (PMID 9736616) --- --- --- --- --- --- SPBC1A4.01 // |apc10|SPBC1E8.06|anaphase-promoting complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.54893916746189 3.11289157236011 1.56370191043108 -5.83713074160801 -1.02463288653759 Max fold change at or above threshold 3 5.83713074160801 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779650_at SPCC306.02c.S1 --- 5.83425906924289 --- --- --- --- 8.42523765563965 2.80749750137329 6.8104944229126 1.44409728050232 0.303710997104645 0.696289002895355 0.303710997104645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC306.02c /DEF=rab-interacting protein (predicted) --- --- --- --- --- --- D89158 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0644. // gb // 11 // --- /// SPCC306.02c // |||rab-interacting protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.20471510448467 -3.00097779304111 -1.51403245301993 -1.23709632993672 -5.83425906924289 Max fold change at or above threshold 3 5.83425906924289 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770663_at SPBC418.02.S1 --- 5.83334672563004 --- --- --- --- 1.49283111095428 1.31293630599976 0.255913317203522 2.34427881240845 0.633789002895355 0.77392578125 0.870360970497131 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC418.02 /DEF=N-acetyltransferase complex (putative) --- --- --- --- --- --- SPBC418.02 // |||N-acetyltransferase complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.4535000429218 -1.13701716079635 3.53926250371823 -5.83334672563004 1.57035768829193 Max fold change at or above threshold 0 5.83334672563004 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1778410_at SPAC1A6.07.S1 --- 5.83332030384711 --- --- --- --- 9.18856525421143 20.8774299621582 6.78764390945435 1.5751861333847 0.219482004642487 0.194580003619194 0.274170011281967 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1A6.07 /DEF=proline-rich protein --- --- --- --- --- --- SPAC1A6.07 // |||proline-rich protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.92322997663366 2.27210988707833 -5.23687766903748 -1.35371940201708 -5.83332030384711 Max fold change at or above threshold 3 5.83332030384711 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775655_at SPBC660.14.S1 --- 5.83175282522637 --- --- --- --- 7.75946140289307 3.50743722915649 6.00599908828735 1.3305538892746 0.665526986122131 0.870360970497131 0.303710997104645 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC660.14 /GEN=mik1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPBC660.14 // |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.41617880668135 -2.21228803138386 -4.66478162641159 -1.29195181165199 -5.83175282522637 Max fold change at or above threshold 3 5.83175282522637 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773439_at SPAPYUG7.03c.S1 --- 5.83111754262248 --- --- --- --- 3.29430508613586 6.80626058578491 5.47195148468018 0.564952611923218 0.601073980331421 0.366210997104645 0.567627012729645 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPYUG7.03c /GEN=mid2 /DEF=pleckstrin homology domain --- --- --- --- --- --- SPAPYUG7.03c // |mid2||anillin homologue|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.58480535693 2.06606868757516 -1.01195206839371 1.66103361455773 -5.83111754262248 Max fold change at or above threshold 3 5.83111754262248 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780017_at SPBC2A9.07c.S1 --- 5.82952911526884 --- --- --- --- 1.21725010871887 1.90678679943085 7.09599494934082 0.54489141702652 0.696289002895355 0.4912109375 0.334473013877869 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2A9.07c /DEF=sequence orphan --- --- --- --- --- --- SPBC2A9.07c // |||conserved fungal family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.17191207080497 1.56647083929012 -2.97417773660177 5.82952911526884 -2.23393151494553 Max fold change at or above threshold 1 5.82952911526884 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779418_at SPAC29A4.10.S1 --- 5.82932471234292 --- --- --- --- 13.2126216888428 8.48856449127197 8.19935512542725 2.26657843589783 0.0676269978284836 0.129638999700546 0.194580003619194 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29A4.10 /GEN=rrn5 /DEF=RNA polymerase I upstream activation factor complex --- --- --- --- --- --- SPAC29A4.10 // |rrn5||RNA polymerase I upstream activation factor complex subunit Rrn5|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.25742350144072 -1.55652015160256 -2.18975368657735 -1.61142205536003 -5.82932471234292 Max fold change at or above threshold 3 5.82932471234292 Max fold change at or above threshold APAPAA No 4 0 AAAA 4 0 0 No No x = 1
1778820_s_at SPAC19B12.12c.S1 --- 5.8291513932173 --- --- --- --- 0.692888975143433 0.855724930763245 0.258614897727966 0.177110552787781 0.688720703125 0.888427972793579 0.953857004642487 0.929931640625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19B12.12c /GEN=yip11 /DEF=SMN family (PMID 10749973) --- --- --- --- --- --- AJ252269 // Schizosaccharomyces pombe mRNA for Yip1p (Yab8p interacting protein 1) (yip1 gene). // gb // 11 // --- /// SPAC19B12.12c // |yip11|yip1, yip1-a|SMN family |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPAPB17E12.02 // |yip12|yip1, yip1-b|SMN family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.8291513932173 1.23501016968282 -3.60864323713956 -2.67923070647026 -3.9121834596365 Max fold change at or above threshold 0 5.8291513932173 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780252_at SPAC227.16c.S1 --- 5.82462579420601 --- --- --- --- 1.10054242610931 6.41024780273438 2.10811638832092 1.13429236412048 0.943848013877869 0.780517995357513 0.601073980331421 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC227.16c /DEF=GINS complex --- --- --- --- --- --- SPAC227.16c // |||GINS complex subunit Psf3|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.20932625458007 5.82462579420601 3.06224066479933 1.9155248705619 1.03066663965921 Max fold change at or above threshold 1 5.82462579420601 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777662_at SPBC30B4.08.S1 --- 5.82325842215325 --- --- --- --- 1.73805677890778 2.8157274723053 2.41057562828064 0.298468083143234 0.753906011581421 0.753906011581421 0.366210997104645 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30B4.08 /DEF=KapD family exonuclease --- --- --- --- --- --- SPBC30B4.08 // |||KapD family exonuclease|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.11742298734742 1.62004343383692 -1.72772065862974 1.38693721490243 -5.82325842215325 Max fold change at or above threshold 1 5.82325842215325 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776760_at YLR216C.S1 Peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds to Hsp82p and contributes to chaperone activity 5.82120575306046 7345.0166015625 1619.79626464844 CPR6 6457 // protein folding // inferred from physical interaction /// 6457 // protein folding // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 3755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay /// 51082 // unfolded protein binding // inferred from direct assay 1549.25183105469 9018.513671875 5671.51953125 1690.34069824219 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR216C /GEN=CPR6 /DB_XREF=GI:6323246 /SEG=NC_001144:-572098,573213 /DEF=Peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds to Hsp82p and contributes to chaperone activity /NOTE=Cpr6p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: chaperone activity [goid GO:0003754] [evidence IDA] [pmid 10942767]; go_function: peptidyl-prolyl cis-trans isomerase activity [goid GO:0003755] [evidence IDA] [pmid 10942767]; go_process: protein folding [goid GO:0006457] [evidence IDA,IPI] [pmid 9927435] --- --- --- --- --- --- S0004206 // CPR6 SGDID:S0004206, Chr XII from 573213-572098, reverse complement, Verified ORF // sgd // 11 // --- /// U48867 // Saccharomyces cerevisiae cyclophilin (CPR6) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000017987 // cdna:Genscan chromosome:SGD1:XII:572098:573213:-1 // ensembl // 11 // --- /// GENEFINDER00000024788 // cdna:GeneFinder chromosome:SGD1:XII:572098:573213:-1 // ensembl // 11 // --- /// YLR216C // cdna:known chromosome:SGD1:XII:572098:573213:-1 gene:YLR216C // ensembl // 11 // --- --- No cerevisiae_gene 1.89960123613725 5.82120575306046 1.48957280050516 3.66081189485443 1.09106903368412 Max fold change at or above threshold 4 5.82120575306046 Max fold change at or above threshold -0.819956032779495 1.26805743316882 0.332413592450605 -0.780514992839926 4482.40643310547 3577.20961221292 0.798055612671112 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771175_at SPCC965.08c.S1 --- 5.81959230797431 --- --- --- --- 3.24540543556213 13.3242053985596 6.44899129867554 0.55766886472702 0.601073980331421 0.219482004642487 0.432372987270355 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC965.08c /DEF=alanine racemase (predicted) --- --- --- --- --- --- SPCC965.08c // |alr1||alanine racemase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.09872513786696 4.1055595866566 -2.334375828517 1.98711422246648 -5.81959230797431 Max fold change at or above threshold 3 5.81959230797431 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779375_at SPBC18E5.09c.S1 --- 5.81900779344443 --- --- --- --- 0.581894159317017 3.38604664802551 1.40270638465881 0.307590574026108 0.985840022563934 0.5927734375 0.5 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18E5.09c /DEF=hypothetical protein --- --- --- --- --- --- SPBC18E5.09c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.56045358575882 5.81900779344443 1.44014953448705 2.41058680895715 -1.89178150585208 Max fold change at or above threshold 1 5.81900779344443 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770801_at SPBC29A10.11c.S1 --- 5.81559147364199 --- --- --- --- 3.17685341835022 2.39626479148865 1.58175528049469 0.546264886856079 0.149657994508743 0.219482004642487 0.5 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A10.11c /GEN=vps902 /DEF=guanyl-nucleotide exchange factor activity (predicted) --- --- --- --- --- --- SPBC29A10.11c // |vps902|vps9b|guanyl-nucleotide exchange factor activity |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.12990584620774 -1.3257522414193 1.81704563611203 -2.00843547514927 -5.81559147364199 Max fold change at or above threshold 1 5.81559147364199 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774043_at SPCC320.10.S1 --- 5.81039798945795 --- --- --- --- 1.39151477813721 6.38696956634521 5.36404848098755 4.03286504745483 0.665526986122131 0.780517995357513 0.533936023712158 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC320.10 /GEN=srp72 /DEF=TPR repeat protein --- --- --- --- --- --- SPCC320.10 // |srp72||signal recognition particle subunit Srp72|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.28990114857766 4.58994016211263 5.81039798945795 3.85482681554291 2.89818341193153 Max fold change at or above threshold 3 5.81039798945795 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771011_at SPCC663.06c.S1 --- 5.8088028679146 --- --- --- --- 4.41161489486694 2.71996665000916 4.64600467681885 3.24151015281677 0.432372987270355 0.432372987270355 0.432372987270355 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC663.06c /DEF=short chain dehydrogenase (predicted) --- --- --- --- --- --- SPCC663.06c // |||short chain dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.8088028679146 -1.62193712737327 -1.20902683738239 1.05313015472512 -1.36097518961444 Max fold change at or above threshold 4 5.8088028679146 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776121_at SPCC61.03.S1 --- 5.8063452269325 --- --- --- --- 1.63048803806305 9.46717643737793 5.21354722976685 1.4786022901535 0.828612983226776 0.334473013877869 0.0952147990465164 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC61.03 /DEF=conserved protein (broad species distribution) --- --- --- --- --- --- SPCC61.03 // |||conserved protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.6632759947432 5.8063452269325 1.26510403015165 3.19753785864036 -1.10272251633925 Max fold change at or above threshold 2 5.8063452269325 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777996_at SPBC1718.05.S1 --- 5.80556178705893 --- --- --- --- 1.50703585147858 0.877687990665436 0.639863073825836 0.259584844112396 0.601073980331421 0.870360970497131 0.953857004642487 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1718.05 /GEN=trs31 /DEF=TRAPP (predicted) --- --- --- --- --- --- SPBC1718.05 // |trs31||TRAPP |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.00706803561049 -1.71705192221667 -5.04506260069128 -2.3552474164008 -5.80556178705893 Max fold change at or above threshold 0 5.80556178705893 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776018_at SPAC1952.14c.S1 --- 5.80526964935226 --- --- --- --- 0.491141021251678 1.38920414447784 1.14745593070984 0.476068884134293 0.828612983226776 0.601073980331421 0.601073980331421 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1952.14c /GEN=mrpl25 /DEF=mitochondrial ribosomal protein subunit YmL25 --- --- --- --- --- --- SPAC1952.14c // |mrpl25||mitochondrial ribosomal protein subunit L25|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.80526964935226 2.82852395618969 -2.00897715191045 2.33630643961593 -1.03165957200667 Max fold change at or above threshold 0 5.80526964935226 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773384_at SPCC757.12.S1 --- 5.80521390301693 --- --- --- --- 7.25997686386108 8.86720085144043 8.20631790161133 1.25059592723846 0.665526986122131 0.398925989866257 0.398925989866257 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC757.12 /DEF=glycosyl hydrolase family 13 --- --- --- --- --- --- SPCC757.12 // |||alpha-amylase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.12943130581636 1.22138142004003 -3.86275651982199 1.13035042059996 -5.80521390301693 Max fold change at or above threshold 3 5.80521390301693 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779501_at SPAPB24D3.08c.S1 --- 5.80255546011907 --- --- --- --- 0.855283439159393 3.84938359260559 4.96282958984375 1.39593374729156 0.665526986122131 0.398925989866257 0.0805663987994194 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB24D3.08c /DEF=NADP dependent oxidoreductase (predicted) --- --- --- --- --- --- SPAPB24D3.08c // |||NADP dependent oxidoreductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.75357880186021 4.50071101153194 -1.34958297660062 5.80255546011907 1.6321299856613 Max fold change at or above threshold 2 5.80255546011907 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774955_at SPAC14C4.07.S1 --- 5.7991510836473 --- --- --- --- 3.59452867507935 5.8592381477356 0.993200123310089 0.642218947410584 0.432372987270355 0.24609400331974 0.753906011581421 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC14C4.07 /DEF=transporter --- --- --- --- --- --- SPAC14C4.07 // |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.13698376272656 1.63004351261887 -5.7991510836473 -3.61913836971715 -5.59704550850209 Max fold change at or above threshold 2 5.7991510836473 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774556_at YNL281W.S1 Heat shock protein regulator that binds to Hsp90p and may stimulate ATPase activity; originally identified as a high-copy number suppressor of a HSP90 loss-of-function mutation; GFP-fusion protein localizes to the cytoplasm and nucleus 5.79846557702777 2525.49670410156 514.992111206055 HCH1 6457 // protein folding // inferred from genetic interaction /// 6457 // protein folding // inferred from mutant phenotype /// 6457 // protein folding // inferred from physical interaction /// 6950 // response to stress // inferred from mutant phenotype /// 6950 // response to stress // inferred from physical interaction /// 6950 // response to stress // inferred from expression pattern 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 30189 // chaperone activator activity // inferred from direct assay /// 30189 // chaperone activator activity // inferred from physical interaction 483.258026123047 2248.83837890625 2802.15502929688 546.726196289063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL281W /GEN=HCH1 /DB_XREF=GI:6324048 /SEG=NC_001146:+108465,108926 /DEF=Heat shock protein regulator that binds to Hsp90p and may stimulate ATPase activity; originally identified as a high-copy number suppressor of a HSP90 loss-of-function mutation; GFP-fusion protein localizes to the cytoplasm and nucleus /NOTE=Hch1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: chaperone activator activity [goid GO:0030189] [evidence IDA,IPI] [pmid 12504007]; go_process: protein folding [goid GO:0006457] [evidence IMP,IPI] [pmid 12504007]; go_process: protein folding [goid GO:0006457] [evidence IGI] [pmid 9990037]; go_process: response to stress [goid GO:0006950] [evidence IEP,IMP,IPI] [pmid 12504007] --- --- --- --- --- --- S0005225 // HCH1 SGDID:S0005225, Chr XIV from 108465-108926, Verified ORF // sgd // 11 // --- /// YNL281W // cdna:known chromosome:SGD1:XIV:108465:108926:1 gene:YNL281W // ensembl // 11 // --- --- No cerevisiae_gene 2.61185512281692 4.6534941115156 1.13010174230533 5.79846557702777 1.13133391839385 Max fold change at or above threshold 4 5.79846557702777 Max fold change at or above threshold -0.876703388609215 0.615978005973757 1.08377063180871 -0.823045249173253 1520.24440765381 1182.82465313134 0.778049007893927 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770533_at SPBC660.08.S1 --- 5.79844807854832 --- --- --- --- 0.454865604639053 0.752453148365021 0.86754697561264 1.3429878950119 0.805419981479645 0.805419981479645 0.665526986122131 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC660.08 /DEF=sequence orphan --- --- --- --- --- --- SPBC660.08 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.40487066937552 1.65423180097803 5.79844807854832 1.90726000551539 2.95249383843299 Max fold change at or above threshold 0 5.79844807854832 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777499_at SPAC22F8.10c.S1 --- 5.79801908753422 --- --- --- --- 1.04012143611908 1.16631972789764 0.69983297586441 6.03064393997192 0.725830018520355 0.725830018520355 0.888427972793579 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F8.10c /GEN=sap145 /DEF=U2 snRNP component (predicted) --- --- --- --- --- --- SPAC22F8.10c // |sap145||U2 snRNP component |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.22434368335016 1.12133034412735 -1.82874442754767 -1.48624239209985 5.79801908753422 Max fold change at or above threshold 1 5.79801908753422 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773647_at SPBC16H5.07c.S1 --- 5.79661379306122 --- --- --- --- 1.10962069034576 6.43204259872437 4.30867433547974 2.44610571861267 0.805419981479645 0.303710997104645 0.432372987270355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16H5.07c /GEN=ppa2 /DEF=serinethreonine protein phosphatase (catalytic subunit) --- --- --- --- --- --- SPBC16H5.07c // |ppa2||serine/threonine protein phosphatase Ppa2|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.433395038962 5.79661379306122 1.10113477693206 3.88301549616665 2.20445215188845 Max fold change at or above threshold 2 5.79661379306122 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772381_at SPAC3H1.01c.S1 --- 5.79440916893709 --- --- --- --- 0.700901865959167 0.659015774726868 3.25160241127014 0.833883345127106 0.901123046875 0.850341975688934 0.567627012729645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H1.01c /GEN=orp3 /DEF=origin recognition complex (subunit 3) (PMID 10535928) --- --- --- --- --- --- AF188642 // Schizosaccharomyces pombe origin recognition complex-related protein subunit 3 (orp3) mRNA, complete cds. // gb // 11 // --- /// SPAC3H1.01c // |orp3|orc3, SPAP14E8.06c|origin recognition complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.25294837685138 -1.06355855631781 5.79440916893709 4.63916928915634 1.18972909850362 Max fold change at or above threshold 1 5.79440916893709 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774205_at SPAC19G12.14.S1 --- 5.79430124736225 --- --- --- --- 1.37326109409332 4.61525344848633 2.0798716545105 0.383702516555786 0.559326171875 0.398925989866257 0.466064006090164 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19G12.14 /GEN=its3 /DEF=1-phosphatidylinositol-4-phosphate 5-kinase activity (PMID 10950958) --- --- --- --- --- --- SPAC19G12.14 // |its3||1-phosphatidylinositol-4-phosphate 5-kinase Its3 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.36696370691612 3.36079822572523 5.79430124736225 1.5145493187395 -3.57897338391229 Max fold change at or above threshold 1 5.79430124736225 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771789_at YGR211W.S1 Essential protein with two zinc fingers, present in the nucleus of growing cells but relocates to the cytoplasm in starved cells via a process mediated by Cpr1p; binds to translation elongation factor eEF-1 (Tef1p) 5.79258980469259 5800.03002929688 1130.34246826172 ZPR1 74 // regulation of cell cycle // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 5515 // protein binding // inferred from direct assay 1074.85925292969 6226.21875 5373.84130859375 1185.82568359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR211W /GEN=ZPR1 /DB_XREF=GI:6321650 /SEG=NC_001139:+915244,916704 /DEF=Essential protein with two zinc fingers, present in the nucleus of growing cells but relocates to the cytoplasm in starved cells via a process mediated by Cpr1p; binds to translation elongation factor eEF-1 (Tef1p) /NOTE=Zpr1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9852145]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9852145]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 9852145]; go_process: regulation of cell cycle [goid GO:0000074] [evidence IMP] [pmid 9852145] --- --- --- --- --- --- S0003443 // ZPR1 SGDID:S0003443, Chr VII from 915246-916706, Verified ORF // sgd // 11 // --- /// GENSCAN00000019505 // cdna:Genscan chromosome:SGD1:VII:915246:916706:1 // ensembl // 11 // --- /// GENEFINDER00000021737 // cdna:GeneFinder chromosome:SGD1:VII:915246:916706:1 // ensembl // 11 // --- /// YGR211W // cdna:known chromosome:SGD1:VII:915246:916706:1 gene:YGR211W // ensembl // 11 // --- --- No cerevisiae_gene 2.99834973397112 5.79258980469259 1.17494125945587 4.99957672964768 1.10323810337177 Max fold change at or above threshold 4 5.79258980469259 Max fold change at or above threshold -0.879188687990467 1.01553827006186 0.702024426272351 -0.838374008343741 3465.1862487793 2718.78725067892 0.784600611767026 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769537_at SPBC3B9.15c.S1 --- 5.79113359028788 --- --- --- --- 0.548552513122559 0.993884563446045 3.17674088478088 0.361072808504105 0.633789002895355 0.71875 0.366210997104645 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B9.15c /GEN=scp1 /DEF=WD repeat protein --- --- --- --- --- --- SPBC3B9.15c // |scp1||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.05115512196648 1.81183120972046 1.24273707881968 5.79113359028788 -1.51922964067875 Max fold change at or above threshold 1 5.79113359028788 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779646_at SPAC823.05c.S1 --- 5.7897784488337 --- --- --- --- 1.39993190765381 1.18138647079468 4.925208568573 5.33751773834229 0.633789002895355 0.633789002895355 0.303710997104645 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC823.05c /GEN=tlg2 /DEF=SNARE --- --- --- --- --- --- SPAC823.05c // |tlg2||SNARE|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.17348795068095 -1.18499063791726 -5.7897784488337 3.51817723536805 3.81269810992994 Max fold change at or above threshold 2 5.7897784488337 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-M62653-1_s_at AFFX-Sc-M62653-1 --- 5.78430480041384 --- --- --- --- 10.9223079681396 5.87249946594238 5.38106679916382 5.59749126434326 0.0952147990465164 0.0107421996071935 0.366210997104645 0.432372987270355 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL M62653 /FEA=CDS /DB_XREF=AAA27721.1 GI:155661 /PROD=green-fluorescent protein /GEN=GFP --- --- --- --- --- --- AFFX-Sc-M62653-1 // --- // affx // --- // --- --- No No -3.65266298515222 -1.85990786912518 -5.78430480041384 -2.02976628534641 -1.95128629100614 Max fold change at or above threshold 4 5.78430480041384 Max fold change at or above threshold APPAAA No 4 0 APAA 3 1 0 No No x = 1
1779143_at YGL263W.S1 Protein of unknown function, member of a family of conserved, often subtelomerically-encoded proteins 5.783869578061 2.72423261404037 3.80151551961899 COS12 --- --- --- 5.63210916519165 4.2134838104248 1.23498141765594 1.97092187404633 0.0952147990465164 0.274170011281967 0.567627012729645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL263W /GEN=COS12 /DB_XREF=GI:6321174 /SEG=NC_001139:+2790,3932 /DEF=Protein of unknown function, member of a family of conserved, often subtelomerically-encoded proteins /NOTE=Cos12p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003232 // span:69-91,258-277 // numtm:2 S0003232 // COS12 SGDID:S0003232, Chr VII from 2790-3932, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021615 // cdna:GeneFinder chromosome:SGD1:VII:2790:3932:1 // ensembl // 11 // --- /// YGL263W // cdna:known chromosome:SGD1:VII:2790:3932:1 gene:YGL263W // ensembl // 11 // --- --- No cerevisiae_gene -5.783869578061 -1.33668703111116 2.1399146196946 -4.56048089847511 -2.8576014297456 Max fold change at or above threshold 2 5.783869578061 Max fold change at or above threshold 1.17015683486604 0.469502789962527 -1.00156900657341 -0.638090618255159 3.26287406682968 2.02471585668531 0.620531413476401 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772296_at SPCC1259.08.S1 --- 5.78264606178107 --- --- --- --- 12.5625553131104 5.31324005126953 6.32830238342285 2.1724579334259 0.0952147990465164 0.303710997104645 0.24609400331974 0.390625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1259.08 /DEF=sequence orphan --- --- --- --- --- --- SPCC1259.08 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.27114325554017 -2.3643869262238 -2.1158801837004 -1.98513828068935 -5.78264606178107 Max fold change at or above threshold 3 5.78264606178107 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775726_at SPCC74.09.S1 --- 5.77688827357791 --- --- --- --- 1.8613612651825 0.649191200733185 0.651615142822266 0.593292891979218 0.665526986122131 0.941162109375 0.888427972793579 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC74.09 /DEF=RNA-binding protein --- --- --- --- --- --- SPCC74.09 // |||RNA-binding protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.77688827357791 -2.86720039193431 -1.41776163849935 -2.85653469795161 -3.13733956760044 Max fold change at or above threshold 0 5.77688827357791 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769934_at SPBC14F5.13c.S1 --- 5.77145770570613 --- --- --- --- 1.09494411945343 1.59869837760925 1.10808002948761 1.70413625240326 0.828612983226776 0.969726979732513 0.943848013877869 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14F5.13c /DEF=alkaline phosphatase activity (predicted) --- --- --- --- --- --- SPBC14F5.13c // |||alkaline phosphatase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.87483009776612 1.46007302948692 5.77145770570613 1.01199687710158 1.55636824028419 Max fold change at or above threshold 0 5.77145770570613 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774809_at SPAC3H8.09c.S1 --- 5.77009872392812 --- --- --- --- 1.68681919574738 9.73311328887939 5.47430753707886 5.81932020187378 0.633789002895355 0.219482004642487 0.334473013877869 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H8.09c /DEF=RNA-binding protein --- --- --- --- --- --- SPAC3H8.09c // |||poly|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.24516377680509 5.77009872392812 -3.8022061158406 3.24534339594906 3.44987786275187 Max fold change at or above threshold 3 5.77009872392812 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774747_at SPBP35G2.07.S1 --- 5.76644456057501 --- --- --- --- 0.932071924209595 1.03584682941437 5.3747410774231 1.77986967563629 0.805419981479645 0.665526986122131 0.432372987270355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP35G2.07 /GEN=ilv1 /DEF=acetolactate synthase subunit (PMID 8299177) --- --- --- --- --- --- SPBP35G2.07 // |ilv1||acetolactate synthase subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.24438141675703 1.11133787265696 1.93089234057563 5.76644456057501 1.9095840454004 Max fold change at or above threshold 1 5.76644456057501 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771394_at SPAC3F10.05c.S1 --- 5.76259313331429 --- --- --- --- 1.38385629653931 3.5846893787384 7.97460079193115 2.10862064361572 0.753906011581421 0.5 0.171387001872063 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3F10.05c /DEF=sequence orphan --- --- --- --- --- --- SPAC3F10.05c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.05971696224567 2.5903624442096 5.38976423398183 5.76259313331429 1.52372804090199 Max fold change at or above threshold 2 5.76259313331429 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774760_at SPAC6G9.02c.S1 --- 5.76195154563434 --- --- --- --- 6.54257345199585 8.4406156539917 9.75401973724365 1.13547873497009 0.24609400331974 0.0771484375 0.144775390625 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G9.02c /DEF=RNA-binding protein --- --- --- --- --- --- SPAC6G9.02c // |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.16496415426333 1.29010636501404 1.37292765836555 1.4908536845342 -5.76195154563434 Max fold change at or above threshold 3 5.76195154563434 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771589_at SPBC839.06.S1 --- 5.75757504790006 --- --- --- --- 3.83925652503967 5.02690029144287 0.66681832075119 6.03914260864258 0.533936023712158 0.358154296875 0.725830018520355 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC839.06 /GEN=cta3 /DEF=Ca2(+)-ATPase (PMID 2145281) --- --- --- --- --- --- SPBC839.06 // |cta3||cation-transporting P-type ATPase Cta3|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.19107441348384 1.30934212357454 1.34932086295176 -5.75757504790006 1.57299794094383 Max fold change at or above threshold 3 5.75757504790006 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1770646_at SPBC29A10.03c.S1 --- 5.75650616309879 --- --- --- --- 2.25395369529724 12.9748983383179 1.12251770496368 0.413954764604568 0.665526986122131 0.366210997104645 0.753906011581421 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A10.03c /DEF=chromatin remodeling complex (predicted) --- --- --- --- --- --- SPBC29A10.03c // ||SPBC365.19c|chromatin remodeling complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.45682537541641 5.75650616309879 -1.7285563858056 -2.00794489506084 -5.44492753320604 Max fold change at or above threshold 1 5.75650616309879 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778983_at SPCC16A11.11.S1 --- 5.752088918621 --- --- --- --- 11.0024404525757 2.08929443359375 7.33347129821777 6.63223695755005 0.334473013877869 0.633789002895355 0.633789002895355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16A11.11 /GEN=mrpl31 /DEF=mitochondrial ribosomal protein subunit YmL31 --- --- --- --- --- --- AF087833 // Schizosaccharomyces pombe negative regulator of Cdc42p (nrf20) mRNA, complete cds. // gb // 11 // --- /// SPCC16A11.11 // |mrpl31||mitochondrial ribosomal protein subunit L31|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.752088918621 -5.26610336756157 -1.67635577251687 -1.50030456316773 -1.6589335578625 Max fold change at or above threshold 3 5.752088918621 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770165_at SPCC1753.05.S1 --- 5.7506083215194 --- --- --- --- 10.702582359314 8.6142053604126 6.89427423477173 1.86112177371979 0.0239257998764515 0.171387001872063 0.0676269978284836 0.5 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1753.05 /DEF=sequence orphan --- --- --- --- --- --- SPCC1753.05 // |rsm1||RNA export factor Rsm1p|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.05614747649507 -1.24243408550471 -2.01589946576954 -1.55238709614056 -5.7506083215194 Max fold change at or above threshold 3 5.7506083215194 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1779630_at SPAC10F6.16.S1 --- 5.7489288335728 --- --- --- --- 3.03023886680603 17.4206275939941 14.0543413162231 7.55324935913086 0.904784977436066 0.219482004642487 0.219482004642487 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC10F6.16 /DEF=conserved eukaryotic protein --- --- --- --- --- --- AB001289 // Fission yeast mRNA for YNL157W homolog, partial cds. // gb // 9 // --- /// SPAC10F6.16 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.69609959855207 5.7489288335728 2.9927516236953 4.63803083980534 2.49262506724172 Max fold change at or above threshold 4 5.7489288335728 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769506_at YKL166C.S1 Subunit of cytoplasmic cAMP-dependent protein kinase, which contains redundant catalytic subunits Tpk1p, Tpk2p, and Tpk3p and regulatory subunit Bcy1p; promotes vegetative growth in response to nutrients; inhibits filamentous growth 5.74429957078578 103.780754089355 596.498840332031 TPK3 6468 // protein amino acid phosphorylation // traceable author statement /// 7124 // pseudohyphal growth // inferred from mutant phenotype 5737 // cytoplasm // traceable author statement /// 5952 // cAMP-dependent protein kinase complex // traceable author statement /// 5952 // cAMP-dependent protein kinase complex // inferred from mutant phenotype /// 5952 // cAMP-dependent protein kinase complex // inferred from sequence similarity 4674 // protein serine/threonine kinase activity // traceable author statement /// 4691 // cAMP-dependent protein kinase activity // traceable author statement 541.460144042969 113.301078796387 94.2604293823242 651.537536621094 0.000244141003349796 0.00805663969367743 0.0375977009534836 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL166C /GEN=TPK3 /DB_XREF=GI:6322682 /SEG=NC_001143:-134514,135710 /DEF=Involved in nutrient control of cell growth and division /NOTE=Tpk3p; go_component: cAMP-dependent protein kinase complex [goid GO:0005952] [evidence TAS] [pmid 7826397]; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 7826397]; go_function: cAMP-dependent protein kinase activity [goid GO:0004691] [evidence TAS] [pmid 2558053]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence TAS] [pmid 2558053]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 2558053]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 10373537] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 6.0E-77 /// hanks // 1.1.14 // AGC group; AGC I Cyclic nucleotide regulated protein kinase (PKA & PKG); TPK3 // 1.0E-150 --- --- S0001649 // TPK3 SGDID:S0001649, Chr XI from 135710-134514, reverse complement, Verified ORF // sgd // 9 // --- /// GENSCAN00000018295 // cdna:Genscan chromosome:SGD1:XI:134514:135710:-1 // ensembl // 9 // --- /// GENEFINDER00000023080 // cdna:GeneFinder chromosome:SGD1:XI:134514:135710:-1 // ensembl // 9 // --- /// YKL166C // cdna:known chromosome:SGD1:XI:134514:135710:-1 gene:YKL166C // ensembl // 9 // --- --- No cerevisiae_gene -1.11611672213103 -4.77894958984483 -1.3994069707205 -5.74429957078578 1.20329731336493 Max fold change at or above threshold 4 5.74429957078578 Max fold change at or above threshold 0.664068081398962 -0.822061197057402 -0.888150809241053 1.04614392489949 350.139797210693 288.103512563395 0.822824240084972 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1775134_at SPCC550.07.S1 --- 5.74405576422715 --- --- --- --- 4.00746726989746 1.10812628269196 4.90709257125854 0.721321702003479 0.149657994508743 0.985107421875 0.725830018520355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC550.07 /DEF=acetamidase (predicted) --- --- --- --- --- --- SPCC550.07 // |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.4908342998975 -3.616435538522 -5.74405576422715 1.22448724862177 -5.55572812902575 Max fold change at or above threshold 2 5.74405576422715 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779513_at SPCC622.19.S1 --- 5.74133176416404 --- --- --- --- 5.69750595092773 0.99236661195755 2.67333054542542 3.64074349403381 0.274170011281967 0.805419981479645 0.5 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC622.19 /GEN=jmj4 /DEF=jmjC domain --- --- --- --- --- --- SPCC622.19 // |jmj4||jmjC domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.33474703511794 -5.74133176416404 -1.61848325744832 -2.13123886257809 -1.56492924048739 Max fold change at or above threshold 3 5.74133176416404 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776926_at YGL176C.S1 Hypothetical protein 5.74106393080366 86.1099739074707 466.907043457031 --- --- --- --- 448.362060546875 94.1225662231445 78.0973815917969 485.452026367188 0.00122069998178631 0.00292969006113708 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL176C /GEN=MPT5 /DB_XREF=GI:6321262 /SEG=NC_001139:-171419,173083 /DEF=Hypothetical ORF /NOTE=Ygl176cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003144 // YGL176C SGDID:S0003144, Chr VII from 173085-171421, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019216 // cdna:Genscan chromosome:SGD1:VII:171421:172071:-1 // ensembl // 11 // --- /// GENEFINDER00000021733 // cdna:GeneFinder chromosome:SGD1:VII:171421:172041:-1 // ensembl // 11 // --- /// YGL176C // cdna:known chromosome:SGD1:VII:171421:173085:-1 gene:YGL176C // ensembl // 11 // --- --- No cerevisiae_gene -3.03135951838039 -4.76359791852577 1.05320629123693 -5.74106393080366 1.08272324775891 Max fold change at or above threshold 4 5.74106393080366 Max fold change at or above threshold 0.779483013273642 -0.827255197604341 -0.899941267046474 0.947713451377173 276.508508682251 220.471195572153 0.797339642902297 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770857_at SPBC336.01.S1 --- 5.74070523376789 --- --- --- --- 5.3109335899353 0.930804252624512 4.30476474761963 1.14529871940613 0.334473013877869 0.559326171875 0.219482004642487 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC336.01 /GEN=fdh1 /DEF=DNA helicase --- --- --- --- --- --- SPBC336.01 // |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.63867591861434 -5.70574701926909 -5.74070523376789 -1.23373375812744 -4.637160157386 Max fold change at or above threshold 2 5.74070523376789 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770638_at SPBC21D10.07.S1 --- 5.74033066368145 --- --- --- --- 0.635523438453674 3.6481146812439 3.56731200218201 0.156952291727066 0.366210997104645 0.26708984375 0.129638999700546 0.865478515625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21D10.07 /DEF=UPF0287 --- --- --- --- --- --- SPBC21D10.07 // |||UPF0287|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.66116623464663 5.74033066368145 5.05158261142938 5.61318715618392 -4.04915042310325 Max fold change at or above threshold 2 5.74033066368145 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776947_at YIR009W.S1 U2B component of U2 snRNP, involved in splicing, binds the U2 snRNA stem-loop IV in vitro; does not contain the conserved C-terminal RNA binding domain found in other family members 5.74029235734446 33.8333721160889 138.215408325195 MSL1 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction /// 398 // nuclear mRNA splicing, via spliceosome // inferred from sequence similarity 5686 // snRNP U2 // inferred from direct assay 3723 // RNA binding // inferred from direct assay 132.38671875 23.0627136230469 44.6040306091309 144.044097900391 0.000244141003349796 0.030273400247097 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR009W /GEN=MSL1 /DB_XREF=GI:6322199 /SEG=NC_001141:+374522,374857 /DEF=involved in splicing /NOTE=Msl1p; go_component: snRNP U2 [goid GO:0005686] [evidence IDA] [pmid 11804584]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 8649387]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI,ISS] [pmid 8649387] --- --- --- --- --- --- S0001448 // MSL1 SGDID:S0001448, Chr IX from 374522-374857, Verified ORF // sgd // 11 // --- /// YIR009W // cdna:known chromosome:SGD1:IX:374522:374857:1 gene:YIR009W // ensembl // 11 // --- --- No cerevisiae_gene 1.13117362924523 -5.74029235734446 1.18936789081172 -2.96804385034431 1.08805550330471 Max fold change at or above threshold 4 5.74029235734446 Max fold change at or above threshold 0.758931790645212 -1.03065612703166 -0.678033840971278 0.949758177357731 86.0243902206421 61.0889267004386 0.710134957582994 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1771858_at SPAC1805.07c.S1 --- 5.73693210829286 --- --- --- --- 0.850691497325897 0.433119416236877 0.266024976968765 0.422693699598312 0.665526986122131 0.850341975688934 0.976073980331421 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1805.07c /GEN=hos2 /DEF=DASH complex (predicted) --- --- --- --- --- --- SPAC1805.07c // |dad2|hos2|DASH complex subunit Dad2 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.59150749809372 -1.96410381394827 -5.73693210829286 -3.19778806869619 -2.0125483254998 Max fold change at or above threshold 0 5.73693210829286 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779280_at SPBC29A10.01.S1 --- 5.73685376142282 --- --- --- --- 0.843201577663422 0.527627289295197 0.405973941087723 4.83732414245605 0.5 0.696289002895355 0.665526986122131 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A10.01 /GEN=ccr1 /DEF=NADPH-cytochrome p450 reductase (PMID 1417773) --- --- --- --- --- --- X64702 // S.pombe mRNA for NADPH-cytochrome P450 reductase. // gb // 11 // --- /// SPBC29A10.01 // |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.12791025389538 -1.598100770697 3.93981921419142 -2.07698448674868 5.73685376142282 Max fold change at or above threshold 1 5.73685376142282 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778536_at YAL047C.S1 Component of the cytoplasmic Tub4p (gamma-tubulin) complex, binds spindle pole bodies and links them to microtubules; has roles in astral microtubule formation and stabilization 5.73655561253505 63.8819732666016 302.589065551758 SPC72 22 // mitotic spindle elongation // inferred from mutant phenotype /// 70 // mitotic sister chromatid segregation // inferred from mutant phenotype /// 7020 // microtubule nucleation // inferred from physical interaction /// 30473 // nuclear migration, microtubule-mediated // inferred from mutant phenotype 5824 // outer plaque of spindle pole body // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from physical interaction 344.624786376953 60.0752105712891 67.6887359619141 260.553344726563 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL047C /GEN=SPC72 /DB_XREF=GI:6319269 /SEG=NC_001133:-54992,56860 /DEF=Spc72p interacts with Stu2p in the two-hybrid assay; Spc72p localizes to the spindle pole bodies. Molecular weight is 72 kD /NOTE=Spc72p; go_component: outer plaque of spindle pole body [goid GO:0005824] [evidence IDA] [pmid 9670012]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9606209]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence IMP] [pmid 9606209]; go_process: mitotic spindle elongation [goid GO:0000022] [evidence IMP] [pmid 9670012]; go_process: nuclear migration (sensu Saccharomyces) [goid GO:0000065] [evidence IMP] [pmid 9670012] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 5.0 /// scop // a.4.5.Arginine repressor (ArgR), N-terminal DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Arginine repressor (ArgR), N-terminal DNA-binding domain // 6.69999980926514 --- S0000045 // SPC72 SGDID:S0000045, Chr I from 56858-54990, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018228 // cdna:GeneFinder chromosome:SGD1:I:54990:56858:-1 // ensembl // 11 // --- /// GENSCAN00000020336 // cdna:Genscan chromosome:SGD1:I:54990:56858:-1 // ensembl // 11 // --- /// YAL047C // cdna:known chromosome:SGD1:I:54990:56858:-1 gene:YAL047C // ensembl // 11 // --- --- No cerevisiae_gene -1.85254058058602 -5.73655561253505 -1.43791677330715 -5.09131661981191 -1.32266498723561 Max fold change at or above threshold 4 5.73655561253505 Max fold change at or above threshold 1.13605536566946 -0.866953127191122 -0.813359808786575 0.544257570308233 183.23551940918 142.061093010787 0.775292331251307 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777159_s_at SPBPB2B2.07c.S1 --- 5.73634445667267 --- --- --- --- 0.0957490876317024 0.2141302973032 0.447022795677185 0.0254908334463835 0.919434010982513 0.904784977436066 0.870360970497131 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB2B2.07c /DEF=DUF999 --- --- --- --- --- --- SPBPB2B2.14c // |||DUF999|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPBC1348.07 // ||SPAC1348.07|DUF999|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPBPB2B2.07c // |||DUF999|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPAC977.06 // |||DUF999|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.73634445667267 2.141302973032 1.71359673142433 4.47022795677185 1 Max fold change at or above threshold 0 5.73634445667267 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774065_at SPBC36.02c.S1 --- 5.73334422412895 --- --- --- --- 1.84036648273468 10.5514545440674 3.688560962677 0.467561066150665 0.725830018520355 0.171387001872063 0.432372987270355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC36.02c /DEF=unknown specificity --- --- --- --- --- --- SPBC36.02c // |||membrane transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.56711263870138 5.73334422412895 2.26287629841808 2.00425349911612 -3.93609865313646 Max fold change at or above threshold 2 5.73334422412895 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773957_at SPBC106.14c.S1 --- 5.73183531783376 --- --- --- --- 0.565275371074677 3.24006533622742 0.589273393154144 0.362728118896484 0.953857004642487 0.633789002895355 0.805419981479645 0.901123046875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC106.14c /DEF=involved in actin cytoskeletal organization (regulation) (predicted) --- --- --- --- --- --- SPBC106.14c // |sda1||SDA1 family protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.54191702920797 5.73183531783376 -1.32600659259856 1.042453684182 -1.55839964322147 Max fold change at or above threshold 1 5.73183531783376 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772072_at SPAC3C7.06c.S1 --- 5.73036868524421 --- --- --- --- 1.05818688869476 0.786793947219849 0.419665038585663 0.184662967920303 0.805419981479645 0.780517995357513 0.718505859375 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3C7.06c /GEN=pit1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPAC3C7.06c // |pit1||serine/threonine protein kinase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.50730523622759 -1.34493521770711 1.41569578385698 -2.52150355974617 -5.73036868524421 Max fold change at or above threshold 0 5.73036868524421 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774635_at SPCC1682.05c.S1 --- 5.72995171215004 --- --- --- --- 0.888320326805115 2.0516951084137 1.87651193141937 5.09003257751465 0.633789002895355 0.665526986122131 0.466064006090164 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1682.05c /DEF=TPR repeat protein --- --- --- --- --- --- SPCC1682.05c // |||TPR repeat protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.42214011182426 2.30963431377588 -1.5535224420739 2.11242709954452 5.72995171215004 Max fold change at or above threshold 1 5.72995171215004 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774863_at YLR012C.S1 Hypothetical protein 5.72726093915476 215.157371520996 499.633346557617 --- --- --- --- 535.79296875 274.558837890625 155.755905151367 463.473724365234 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR012C /GEN=LOT6 /DB_XREF=GI:37362676 /SEG=NC_001144:-169981,170280 /DEF=Hypothetical ORF /NOTE=Ylr012cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004002 // YLR012C SGDID:S0004002, Chr XII from 170280-169981, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017760 // cdna:Genscan chromosome:SGD1:XII:169981:170280:-1 // ensembl // 11 // --- /// YLR012C // cdna:known chromosome:SGD1:XII:169981:170280:-1 gene:YLR012C // ensembl // 11 // --- --- No cerevisiae_gene -5.72726093915476 -1.95146866466357 1.98844941784592 -3.43995284306752 -1.1560374204251 Max fold change at or above threshold 4 5.72726093915476 Max fold change at or above threshold 1.02657033589081 -0.476674073590634 -1.16031309075423 0.610416828454054 357.395359039307 173.780211129799 0.486240816324328 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772028_at SPBC16G5.09.S1 --- 5.7269864834917 --- --- --- --- 1.83912837505341 10.5326633453369 3.38060355186462 4.21434211730957 0.780517995357513 0.0561522990465164 0.5 0.274170011281967 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16G5.09 /DEF=serine carboxypeptidase (predicted) --- --- --- --- --- --- SPBC16G5.09 // |||serine carboxypeptidase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.22381810725629 5.7269864834917 1.6414823777994 1.83815529014741 2.29148882398554 Max fold change at or above threshold 3 5.7269864834917 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1778232_at YLR096W.S1 Serine/threonine protein kinase involved in regulation of exocytosis; localizes to the cytoplasmic face of the plasma membrane; closely related to Kin1p 5.72605351507957 223.820533752441 1175.59014892578 KIN2 6887 // exocytosis // inferred from genetic interaction /// 6887 // exocytosis // inferred from physical interaction 5624 // membrane fraction // inferred from direct assay /// 5886 // plasma membrane // inferred from physical interaction 4672 // protein kinase activity // inferred from direct assay /// 4672 // protein kinase activity // inferred from sequence similarity 1124.21313476563 196.332977294922 251.308090209961 1226.96716308594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR096W /GEN=KIN2 /DB_XREF=GI:6323125 /SEG=NC_001144:+332591,336034 /DEF=Serine/threonine protein kinase /NOTE=Kin2p; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 8020610]; go_function: protein kinase activity [goid GO:0004672] [evidence IDA,ISS] [pmid 8203145]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 4.0E-67 /// hanks // 2.2.2 // CaMK Group; CaMK II KIN1/SNF1/Nim1; KIN2 // 1.0E-152 --- --- S0004086 // KIN2 SGDID:S0004086, Chr XII from 332591-336034, Verified ORF // sgd // 11 // --- /// GENSCAN00000017894 // cdna:Genscan chromosome:SGD1:XII:332591:336034:1 // ensembl // 11 // --- /// GENEFINDER00000024698 // cdna:GeneFinder chromosome:SGD1:XII:332591:336034:1 // ensembl // 11 // --- /// YLR096W // cdna:known chromosome:SGD1:XII:332591:336034:1 gene:YLR096W // ensembl // 11 // --- --- No cerevisiae_gene -1.33818036726039 -5.72605351507957 -1.22381594724021 -4.47344585614564 1.091400843081 Max fold change at or above threshold 4 5.72605351507957 Max fold change at or above threshold 0.769649166533944 -0.91263370529827 -0.812961683982379 0.955946222746704 699.705341339111 551.560128802909 0.788274858310101 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769417_at SPBC1709.13c.S1 --- 5.72292769632201 --- --- --- --- 4.077712059021 13.8264513015747 6.58553123474121 2.06242179870605 0.432372987270355 0.0239257998764515 0.149657994508743 0.129638999700546 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1709.13c /DEF=histone lysine methyltransferase (predicted) --- --- --- --- --- --- SPBC1709.13c // |||histone lysine methyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.72292769632201 3.39073752669389 1.81031778681418 1.61500643974413 -1.97714747855134 Max fold change at or above threshold 3 5.72292769632201 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1779283_at SPCC548.06c.S1 --- 5.72158196138906 --- --- --- --- 0.984834432601929 1.02072954177856 1.69641351699829 2.02353978157043 0.71875 0.870360970497131 0.398925989866257 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC548.06c /DEF=hexose transporter (predicted) --- --- --- --- --- --- SPCC548.06c // |||hexose transporter |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 5.72158196138906 1.03644786167945 3.8204762152616 1.72253676439437 2.05470048018554 Max fold change at or above threshold 0 5.72158196138906 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775714_at SPBC776.06c.S1 --- 5.71787347889348 --- --- --- --- 0.973293125629425 5.56516695022583 5.05656003952026 3.14590644836426 0.725830018520355 0.398925989866257 0.149657994508743 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC776.06c /DEF=sequence orphan --- --- --- --- --- --- SPBC776.06c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.70096665784604 5.71787347889348 2.42383433453881 5.19531054557712 3.23222918720382 Max fold change at or above threshold 3 5.71787347889348 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769939_s_at SPCC16C4.13c.S1 --- 5.71598549055076 --- --- --- --- 3.30023574829102 0.916323244571686 3.90977239608765 4.35739278793335 0.432372987270355 0.7470703125 0.533936023712158 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16C4.13c /GEN=rpl1201 /DEF=60S ribosomal protein L12.1L12A --- --- --- --- --- --- SPCC16C4.13c // |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPCC31H12.04c // |rpl1202|rpl12-2|60S ribosomal protein L12|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.22615377680067 -3.601606494042 -5.71598549055076 1.1846948806952 1.32032773422013 Max fold change at or above threshold 3 5.71598549055076 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773324_at SPBC1778.07.S1 --- 5.71488045453592 --- --- --- --- 1.05728840827942 6.04227685928345 4.32041883468628 0.693832278251648 0.850341975688934 0.334473013877869 0.366210997104645 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1778.07 /DEF=methyltransferase (predicted) --- --- --- --- --- --- SPBC1778.07 // |||methyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.62013029843352 5.71488045453592 3.73633001840757 4.08632006258077 -1.52383860108617 Max fold change at or above threshold 2 5.71488045453592 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779544_at YER127W.S1 Essential protein involved in maturation of 18S rRNA; depletion leads to inhibited pre-rRNA processing and reduced polysome levels; localizes primarily to the nucleolus 5.71258621095162 81.2158012390137 364.049758911133 LCP5 154 // rRNA modification // traceable author statement /// 6365 // 35S primary transcript processing // traceable author statement 5732 // small nucleolar ribonucleoprotein complex // traceable author statement /// 30532 // small nuclear ribonucleoprotein complex // traceable author statement 3723 // RNA binding // inferred from direct assay 366.912414550781 98.2028274536133 64.2287750244141 361.187103271484 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER127W /GEN=LCP5 /DB_XREF=GI:6320974 /SEG=NC_001137:+414477,415550 /DEF=Lethal with conditional pap1 allele /NOTE=Lcp5p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence TAS] [pmid 10690410]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence TAS] [pmid 10690410]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 9814757]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: rRNA modification [goid GO:0000154] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0000929 // LCP5 SGDID:S0000929, Chr V from 414477-415550, Verified ORF // sgd // 11 // --- /// GENSCAN00000016908 // cdna:Genscan chromosome:SGD1:V:414477:415550:1 // ensembl // 11 // --- /// GENEFINDER00000019710 // cdna:GeneFinder chromosome:SGD1:V:414477:415550:1 // ensembl // 11 // --- /// YER127W // cdna:known chromosome:SGD1:V:414477:415550:1 gene:YER127W // ensembl // 11 // --- --- No cerevisiae_gene 1.39147704239196 -3.73627138917252 -1.10203067009097 -5.71258621095162 -1.01585137239796 Max fold change at or above threshold 4 5.71258621095162 Max fold change at or above threshold 0.880296500790725 -0.759187201189293 -0.966473833012165 0.845364533410733 222.632780075073 163.898907181965 0.736184972970726 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774931_at SPAC1002.02.S1 --- 5.70825698125484 --- --- --- --- 1.59064996242523 9.07983875274658 7.68022346496582 5.3938364982605 0.633789002895355 0.129638999700546 0.398925989866257 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1002.02 /DEF=sequence orphan --- --- --- --- --- --- SPAC1002.02 // |||nucleoporin |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.82893382233637 5.70825698125484 2.10731766614039 4.82835548133792 3.3909638359634 Max fold change at or above threshold 3 5.70825698125484 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774195_at YGR247W.S1 Cyclic nucleotide phosphodiesterase, hydrolyzes ADP-ribose 1'', 2''-cyclic phosphate to ADP-ribose 1''-phosphate; no detectable phenotype is conferred by null mutation or by overexpression 5.70228966111906 106.44446182251 35.2788953781128 CPD1 6259 // DNA metabolism // inferred from genetic interaction /// 7126 // meiosis // inferred from expression pattern 30136 // clathrin-coated vesicle // inferred from direct assay 4113 // 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity // inferred from direct assay /// 4113 // 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity // inferred from mutant phenotype 30.4020557403564 39.5275955200195 173.361328125 40.1557350158691 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR247W /GEN=CPD1 /DB_XREF=GI:6321686 /SEG=NC_001139:+984970,985689 /DEF=Cyclic nucleotide phosphodiesterase, hydrolyzes ADP-ribose 1'',2''-cyclic phosphate to ADP-ribose 1''-phosphate; no detectable phenotype is conferred by null mutation or by overexpression /NOTE=Cpd1p; go_component: clathrin-coated vesicle [goid GO:0030136] [evidence IDA] [pmid 14562095]; go_function: 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity [goid GO:0004113] [evidence IDA,IMP] [pmid 10734185]; go_process: DNA metabolism [goid GO:0006259] [evidence IGI] [pmid 10051619]; go_process: meiosis [goid GO:0007126] [evidence IEP] [pmid 10051619] --- --- --- --- --- --- S0003479 // CPD1 SGDID:S0003479, Chr VII from 984971-985690, Verified ORF // sgd // 11 // --- /// GENSCAN00000019530 // cdna:Genscan chromosome:SGD1:VII:984971:985690:1 // ensembl // 11 // --- /// GENEFINDER00000021617 // cdna:GeneFinder chromosome:SGD1:VII:984971:985690:1 // ensembl // 11 // --- /// YGR247W // cdna:known chromosome:SGD1:VII:984971:985690:1 gene:YGR247W // ensembl // 11 // --- --- No cerevisiae_gene 1.97908946949368 1.30016193173245 2.51999729224998 5.70228966111906 1.32082301798314 Max fold change at or above threshold 4 5.70228966111906 Max fold change at or above threshold -0.590838468009384 -0.457576723038664 1.49681909063483 -0.448403899586785 70.8616786003113 68.4783152259345 0.966365976343576 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771684_at SPBC215.05.S1 --- 5.69851200395937 --- --- --- --- 1.60247910022736 1.65513455867767 1.49441599845886 0.281210094690323 0.45751953125 0.780517995357513 0.725830018520355 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC215.05 /GEN=gpd1 /DEF=glycerol-3-phosphate dehydrogenase --- --- --- --- --- --- SPBC215.05 // |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.60176756392324 1.03285874894895 3.60098638883684 -1.07231125863209 -5.69851200395937 Max fold change at or above threshold 0 5.69851200395937 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770405_at SPCC1682.12c.S1 --- 5.6979819062235 --- --- --- --- 0.945061862468719 3.69790744781494 0.86641800403595 0.25754177570343 0.805419981479645 0.601073980331421 0.870360970497131 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1682.12c /GEN=ubp16 /DEF=ubiquitin C-terminal hydrolase activity --- --- --- --- --- --- SPCC1682.12c // |ubp16||ubiquitin C-terminal hydrolase activity|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 5.6979819062235 3.91287342624868 2.45208481822751 -1.09076895686197 -3.66954782340631 Max fold change at or above threshold 1 5.6979819062235 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772551_at SPBC2A9.10.S1 --- 5.69703704832673 --- --- --- --- 1.55649316310883 8.86739921569824 0.818888068199158 5.10299730300903 0.466064006090164 0.24609400331974 0.62646484375 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2A9.10 /DEF=Bin3 family --- --- --- --- --- --- SPBC2A9.10 // |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.02218474327307 5.69703704832673 1.72113037402471 -1.90073982459136 3.27852214449608 Max fold change at or above threshold 2 5.69703704832673 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776005_at SPAC27D7.03c.S1 --- 5.69620975082156 --- --- --- --- 0.838811814785004 4.77804803848267 2.51567625999451 1.6668541431427 0.994140982627869 0.696289002895355 0.828612983226776 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27D7.03c /GEN=mei2 /DEF=RNA-binding protein --- --- --- --- --- --- SPAC27D7.03c // |mei2||RNA-binding protein involved in meiosis Mei1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- SPCC1682.03c // sanger // 1 // Negative Strand Matching Probes No No 2.69091113739167 5.69620975082156 1.52576802253007 2.9990949288659 1.98716102201056 Max fold change at or above threshold 2 5.69620975082156 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774153_at SPAC1834.12.S1 --- 5.69570329151169 --- --- --- --- 1.23943901062012 4.14818954467773 0.914359986782074 7.05947685241699 0.466064006090164 0.398925989866257 0.665526986122131 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1834.12 /GEN=pex7 /DEF=peroxisomal targeting signal receptor --- --- --- --- --- --- D89147 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0580. // gb // 11 // --- /// SPAC1834.12 // |pex7|SPAP17D4.01|peroxin-7 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.60477353063834 3.34682829016517 1.4504382347193 -1.35552630095079 5.69570329151169 Max fold change at or above threshold 2 5.69570329151169 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777597_at SPBC1778.01c.S1 --- 5.69413745657745 --- --- --- --- 4.38847398757935 1.57959151268005 0.770700395107269 4.29302024841309 0.366210997104645 0.696289002895355 0.696289002895355 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1778.01c /DEF=zuotin-like protein --- --- --- --- --- --- SPBC1778.01c // |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.5117668186023 -2.77823345615065 1.03835375518143 -5.69413745657745 -1.02223463520852 Max fold change at or above threshold 2 5.69413745657745 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774089_at SPAC1952.10c.S1 --- 5.68899253000996 --- --- --- --- 7.15486192703247 1.2576676607132 5.41915941238403 3.40663194656372 0.366210997104645 0.5927734375 0.334473013877869 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1952.10c /DEF=hypothetical protein --- --- --- --- --- --- SPAC1952.10c // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.34286240773927 -5.68899253000996 -1.79448424059344 -1.32028999011949 -2.10027441744906 Max fold change at or above threshold 3 5.68899253000996 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776011_at SPCC1840.03.S1 --- 5.68285350781228 --- --- --- --- 4.83380270004272 2.28535485267639 2.12931656837463 3.30727434158325 0.601073980331421 0.725830018520355 0.753906011581421 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1840.03 /GEN=sal3 /DEF=karyopherin --- --- --- --- --- --- SPCC1840.03 // |sal3|pse1|karyopherin|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.17735492610826 -2.11512128822438 -5.68285350781228 -2.27011932928907 -1.46156689793345 Max fold change at or above threshold 2 5.68285350781228 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772002_at SPAC1782.07.S1 --- 5.68191884781934 --- --- --- --- 1.29056930541992 7.33291006088257 1.41863572597504 1.09047198295593 0.805419981479645 0.274170011281967 0.725830018520355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1782.07 /GEN=qcr8 /DEF=ubiquinol-cytochrome-c reductase complex subunit 7 --- --- --- --- --- --- U18794 // Schizosaccharomyces pombe ubiquinol-cytochrome c oxidoreductase subunit VIII (QCR8) mRNA, complete cds. // gb // 11 // --- /// SPAC1782.07 // |qcr8||ubiquinol-cytochrome-c reductase complex subunit 7|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.78768351960679 5.68191884781934 -1.41618286335905 1.09923250151486 -1.18349606921728 Max fold change at or above threshold 1 5.68191884781934 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777959_at YKL113C.S1 5' to 3' exonuclease, 5' flap endonuclease, required for Okazaki fragment processing and maturation as well as for long-patch base-excision repair; member of the S. pombe RAD2/FEN1 family 5.68000911968837 45.4263343811035 258.408622741699 RAD27 731 // DNA synthesis during DNA repair // inferred from mutant phenotype /// 1302 // replicative cell aging // inferred from mutant phenotype /// 6260 // DNA replication // traceable author statement /// 6281 // DNA repair // traceable author statement /// 6303 // double-strand break repair via nonhomologous end-joining // inferred from direct assay 5634 // nucleus // inferred from mutant phenotype 17108 // 5'-flap endonuclease activity // inferred from direct assay /// 17108 // 5'-flap endonuclease activity // traceable author statement 244.243057250977 47.8521995544434 43.0004692077637 272.574188232422 0.000244141003349796 0.000244141003349796 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL113C /GEN=RAD27 /DB_XREF=GI:6322736 /SEG=NC_001143:-224373,225521 /DEF=5' to 3' exonuclease, 5' flap endonuclease, required for Okazaki fragment processing and maturation as well as for long-patch base-excision repair; member of the S. pombe RAD2/FEN1 family /NOTE=Rad27p; go_component: nucleus [goid GO:0005634] [evidence IMP] [pmid 9671469]; go_function: 5'-flap endonuclease activity [goid GO:0017108] [evidence TAS] [pmid 10357855]; go_function: 5'-flap endonuclease activity [goid GO:0017108] [evidence IDA] [pmid 11825897]; go_process: DNA repair [goid GO:0006281] [evidence TAS] [pmid 10357855]; go_process: DNA replication [goid GO:0006260] [evidence TAS] [pmid 10357855]; go_process: DNA synthesis during DNA repair [goid GO:0000731] [evidence IMP] [pmid 10025407]; go_process: replicative cell aging [goid GO:0001302] [evidence IMP] [pmid 12024027] --- --- --- --- --- --- S0001596 // RAD27 SGDID:S0001596, Chr XI from 225521-224373, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018331 // cdna:Genscan chromosome:SGD1:XI:224373:225521:-1 // ensembl // 11 // --- /// GENEFINDER00000022981 // cdna:GeneFinder chromosome:SGD1:XI:224373:225521:-1 // ensembl // 11 // --- /// YKL113C // cdna:known chromosome:SGD1:XI:224373:225521:-1 gene:YKL113C // ensembl // 11 // --- --- No cerevisiae_gene 1.9765961943592 -5.10411348956053 -1.53111533330406 -5.68000911968837 1.11599564507716 Max fold change at or above threshold 4 5.68000911968837 Max fold change at or above threshold 0.747430159282756 -0.842469976012809 -0.881747602400708 0.976787419130761 151.917478561401 123.524020997724 0.813099467997017 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771528_at SPBC15D4.13c.S1 --- 5.67165477189493 --- --- --- --- 4.09531879425049 1.56264591217041 8.43186569213867 3.36001110076904 0.357666015625 0.5 0.194580003619194 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC15D4.13c /DEF=sequence orphan --- --- --- --- --- --- SPBC15D4.13c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.67165477189493 -2.62075929188742 1.0198815719521 2.05890337621002 -1.21884085243443 Max fold change at or above threshold 3 5.67165477189493 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769592_at SPBC30D10.15.S1 --- 5.67093416080633 --- --- --- --- 3.6703052520752 7.74923658370972 6.82902860641479 2.87019729614258 0.398925989866257 0.0805663987994194 0.0952147990465164 0.0107421996071935 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30D10.15 /DEF=involved in rRNA processing (predicted) --- --- --- --- --- --- SPBC30D10.15 // |||nuclear assembly factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.30418654189036 2.11133299589409 -5.67093416080633 1.86061598079714 -1.27876409646401 Max fold change at or above threshold 4 5.67093416080633 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1779892_at YPR167C.S1 3'-phosphoadenylsulfate reductase, reduces 3'-phosphoadenylyl sulfate to adenosine-3',5'-bisphosphate and free sulfite using reduced thioredoxin as cosubstrate, involved in sulfate assimilation and methionine metabolism 5.66948465417665 115.047588348389 613.994323730469 MET16 103 // sulfate assimilation // traceable author statement /// 6555 // methionine metabolism // inferred from mutant phenotype 5622 // intracellular // traceable author statement /// 5737 // cytoplasm // traceable author statement 4604 // phosphoadenylyl-sulfate reductase (thioredoxin) activity // inferred from direct assay 572.367980957031 100.955909729004 129.139266967773 655.620666503906 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR167C /GEN=MET16 /DB_XREF=GI:6325425 /SEG=NC_001148:-876841,877626 /DEF=3'-phosphoadenylsulfate reductase, reduces 3'-phosphoadenylyl sulfate to adenosine-3',5'-bisphosphate and free sulfite using reduced thioredoxin as cosubstrate, involved in sulfate assimilation and methionine metabolism /NOTE=Met16p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 12406228]; go_function: phosphoadenylyl-sulfate reductase (thioredoxin) activity [goid GO:0004604] [evidence IDA] [pmid 2203779]; go_process: methionine metabolism [goid GO:0006555] [evidence IMP] [pmid 1101032]; go_process: sulfate assimilation [goid GO:0000103] [evidence TAS] [pmid 2203779] --- --- --- --- --- --- S0006371 // MET16 SGDID:S0006371, Chr XVI from 877628-876843, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017313 // cdna:Genscan chromosome:SGD1:XVI:876843:877628:-1 // ensembl // 11 // --- /// GENEFINDER00000020800 // cdna:GeneFinder chromosome:SGD1:XVI:876843:877628:-1 // ensembl // 11 // --- /// YPR167C // cdna:known chromosome:SGD1:XVI:876843:877628:-1 gene:YPR167C // ensembl // 11 // --- --- No cerevisiae_gene -1.14056493599213 -5.66948465417665 -1.29225538508242 -4.43217616451133 1.14545307969127 Max fold change at or above threshold 4 5.66948465417665 Max fold change at or above threshold 0.715989882979435 -0.907926907975139 -0.810841088924547 1.00277811392025 364.520956039429 290.293242765795 0.796369146838284 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777480_at SPAC824.03c.S1 --- 5.66615394611637 --- --- --- --- 1.17786240577698 5.64739990234375 6.67394971847534 2.83401012420654 0.567627012729645 0.219482004642487 0.0375977009534836 0.111571997404099 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC824.03c /DEF=hypothetical protein --- --- --- --- --- --- SPAC824.03c // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.61947593199054 4.79461766896146 4.48329043119333 5.66615394611637 2.40606212602319 Max fold change at or above threshold 3 5.66615394611637 Max fold change at or above threshold AAAPPA No 4 0 AAPA 3 1 0 No No x = 1
1769604_at YDL149W.S1 Transmembrane protein involved in formation of Cvt and autophagic vesicles; cycles between the pre-autophagosomal structure and other cytosolic punctate structures, not found in autophagosomes 5.66326653880828 246.922508239746 547.158233642578 ATG9 45 // autophagic vacuole formation // inferred from mutant phenotype /// 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6914 // autophagy // inferred from mutant phenotype 5624 // membrane fraction // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 16021 // integral to membrane // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity --- 519.332153320313 213.22151184082 280.623504638672 574.984313964844 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL149W /GEN=ATG9 /DB_XREF=GI:6320052 /SEG=NC_001136:+184926,187919 /DEF=Integral membrane protein /NOTE=Atg9p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10735854]; go_component: integral to membrane [goid GO:0016021] [evidence IDA,ISS] [pmid 10662773]; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 10662773]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: autophagic vacuole formation [goid GO:0000045] [evidence IMP] [pmid 10662773]; go_process: autophagy [goid GO:0006914] [evidence IMP] [pmid 10662773]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 10662773] --- --- --- --- --- S0002308 // span:316-338,373-395,536-558,620-642,652-671,725-747 // numtm:6 S0002308 // ATG9 SGDID:S0002308, Chr IV from 184926-187919, Verified ORF // sgd // 10 // --- /// GENSCAN00000024988 // cdna:Genscan chromosome:SGD1:IV:184926:187919:1 // ensembl // 10 // --- /// GENEFINDER00000023701 // cdna:GeneFinder chromosome:SGD1:IV:185037:187919:1 // ensembl // 10 // --- /// YDL149W // cdna:known chromosome:SGD1:IV:184926:187919:1 gene:YDL149W // ensembl // 10 // --- --- No cerevisiae_gene -5.66326653880828 -2.43564614487875 1.32145213544006 -1.85063668843064 1.10716101494722 Max fold change at or above threshold 4 5.66326653880828 Max fold change at or above threshold 0.691007452684939 -1.03866506081798 -0.657811348139792 1.00546895627283 397.040370941162 176.976068642936 0.445738221086748 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777927_at YKL078W.S1 Predominantly nucleolar DEAH-box RNA helicase, required for 18S rRNA synthesis 5.66207894477013 36.8186855316162 222.258056640625 DHR2 7046 // ribosome biogenesis // inferred from direct assay /// 7046 // ribosome biogenesis // traceable author statement 5730 // nucleolus // inferred from direct assay 3724 // RNA helicase activity // inferred from direct assay 199.289199829102 38.4401931762695 35.1971778869629 245.226913452148 0.000244141003349796 0.00415039015933871 0.00585938012227416 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL078W /GEN=DHR2 /DB_XREF=GI:6322772 /SEG=NC_001143:+288490,290697 /DEF=Predominantly nucleolar DEAH-box RNA helicase, required for 18S rRNA synthesis /NOTE=Dhr2p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 10982841]; go_function: RNA helicase activity [goid GO:0003724] [evidence IDA] [pmid 10982841]; go_process: ribosome biogenesis [goid GO:0007046] [evidence IDA,TAS] [pmid 10982841] --- --- --- --- --- --- S0001561 // DHR2 SGDID:S0001561, Chr XI from 288490-290697, Verified ORF // sgd // 11 // --- /// GENSCAN00000018358 // cdna:Genscan chromosome:SGD1:XI:288490:290697:1 // ensembl // 11 // --- /// GENEFINDER00000023078 // cdna:GeneFinder chromosome:SGD1:XI:288718:290697:1 // ensembl // 11 // --- /// YKL078W // cdna:known chromosome:SGD1:XI:288490:290697:1 gene:YKL078W // ensembl // 11 // --- --- No cerevisiae_gene 1.53380104477453 -5.18439641848964 -1.91566190839315 -5.66207894477013 1.23050779300855 Max fold change at or above threshold 4 5.66207894477013 Max fold change at or above threshold 0.641672130439238 -0.838056879781938 -0.867890970175392 1.06427571951809 129.538371086121 108.701664657362 0.839146453255105 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1772567_at YGR117C.S1 Hypothetical protein 5.66022706635811 210.073516845703 202.850799560547 --- --- 5737 // cytoplasm // inferred from direct assay --- 179.722885131836 212.166595458984 207.980438232422 225.978713989258 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR117C /GEN=SPT6 /DB_XREF=GI:6321555 /SEG=NC_001139:-725051,726481 /DEF=Hypothetical ORF /NOTE=Ygr117cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003349 // YGR117C SGDID:S0003349, Chr VII from 726483-725053, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019431 // cdna:Genscan chromosome:SGD1:VII:725053:726483:-1 // ensembl // 11 // --- /// GENEFINDER00000021461 // cdna:GeneFinder chromosome:SGD1:VII:725053:726483:-1 // ensembl // 11 // --- /// YGR117C // cdna:known chromosome:SGD1:VII:725053:726483:-1 gene:YGR117C // ensembl // 11 // --- --- No cerevisiae_gene 5.66022706635811 1.18052075173036 1.14116649413214 1.15722846358636 1.25737305977194 Max fold change at or above threshold 4 5.66022706635811 Max fold change at or above threshold -1.37730676117872 0.293828481435084 0.0782047194827648 1.00527356026087 206.462158203125 19.4141739697881 0.0940326020940252 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775124_at SPBC30D10.04.S1 --- 5.66007455793985 --- --- --- --- 1.15388059616089 6.53105020523071 2.9634530544281 0.291022032499313 0.633789002895355 0.274170011281967 0.567627012729645 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30D10.04 /DEF=conserved eukaryotic protein --- --- --- --- --- --- AY498547 // Schizosaccharomyces pombe Swi3 (swi3) mRNA, complete cds. // gb // 10 // --- /// SPBC30D10.04 // |swi3||replication fork protection complex subunit Swi3p|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 2.42965056286244 5.66007455793985 1.26106415941729 2.56824931824653 -3.96492521975501 Max fold change at or above threshold 2 5.66007455793985 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773530_at SPBC1709.07.S1 --- 5.65964716777567 --- --- --- --- 6.1815390586853 1.9531102180481 12.747896194458 5.35227108001709 0.533936023712158 0.805419981479645 0.303710997104645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1709.07 /DEF=3-keto sterol reductase (predicted) --- --- --- --- --- --- D89217 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1224. // gb // 11 // --- /// SPBC1709.07 // |erg27||3-keto sterol reductase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.65964716777567 -3.16497195169202 2.88268337248519 2.06225279391331 -1.15493758934676 Max fold change at or above threshold 3 5.65964716777567 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772267_at SPCC663.05c.S1 --- 5.65849342434381 --- --- --- --- 6.49386072158813 8.94379329681396 1.14763069152832 4.81527328491211 0.194580003619194 0.010498046875 0.334473013877869 0.00585938012227416 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC663.05c /GEN=cia1 /DEF=chaperone activity --- --- --- --- --- --- SPCC663.05c // |cia1||chaperone activity|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.11342436817973 1.37726903613459 -1.0035031870366 -5.65849342434381 -1.34859650477899 Max fold change at or above threshold 3 5.65849342434381 Max fold change at or above threshold APPPAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1778634_at SPCC1183.06.S1 --- 5.65811171777364 --- --- --- --- 3.47116351127625 0.797833919525146 2.67512392997742 0.613484442234039 0.466064006090164 0.805419981479645 0.533936023712158 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1183.06 /GEN=ung1 /DEF=uracil DNA N-glycosylase (PMID 12810074) --- --- --- --- --- --- SPCC1183.06 // |ung1||uracil DNA N-glycosylase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 1.67747119244542 -4.35073444024817 1.19075548204681 -1.29757110404435 -5.65811171777364 Max fold change at or above threshold 2 5.65811171777364 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779583_at YIL060W.S1 Hypothetical protein 5.65800197309735 31.3547878265381 23.2704172134399 --- --- --- --- 19.3722152709961 37.8600883483887 24.8494873046875 27.1686191558838 0.0239257998764515 0.00585938012227416 0.030273400247097 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL060W /GEN=SNP1 /DB_XREF=GI:6322129 /SEG=NC_001141:+246389,246823 /DEF=Hypothetical ORF /NOTE=Yil060wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001322 // YIL060W SGDID:S0001322, Chr IX from 246389-246823, Uncharacterized ORF // sgd // 11 // --- /// YIL060W // cdna:known chromosome:SGD1:IX:246389:246823:1 gene:YIL060W // ensembl // 11 // --- GENSCAN00000016433 // ensembl // 9 // Negative Strand Matching Probes /// YIL059C // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene 5.65800197309735 1.95434997075799 1.09321152115566 1.28273854884794 1.40245288294728 Max fold change at or above threshold 4 5.65800197309735 Max fold change at or above threshold -1.02399973317821 1.36021359353123 -0.317645631650502 -0.0185682287025172 27.312602519989 7.75428644336472 0.283908735452422 PPPPPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1771369_at SPAC144.12.S1 --- 5.65780082464149 --- --- --- --- 3.83503270149231 10.5390653610229 21.6978511810303 13.529764175415 0.334473013877869 0.24609400331974 0.0805663987994194 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC144.12 /DEF=ribose 5-phosphate isomerase (predicted) --- --- --- --- --- --- SPAC144.12 // |||ribose 5-phosphate isomerase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.38235465237443 2.74810312749665 1.86844591515989 5.65780082464149 3.52793971486873 Max fold change at or above threshold 4 5.65780082464149 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772056_at SPAC4A8.07c.S1 --- 5.65697979735942 --- --- --- --- 2.83282876014709 8.69721984863281 0.50076699256897 2.97972655296326 0.366210997104645 0.303710997104645 0.888427972793579 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4A8.07c /DEF=diacylglycerol kinase --- --- --- --- --- --- SPAC4A8.07c // |||sphingoid long chain base |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.32752546027541 3.07015375266848 1.43574651703096 -5.65697979735942 1.05185551448882 Max fold change at or above threshold 3 5.65697979735942 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779753_at YCL024W.S1 Protein kinase of the bud neck involved in the septin checkpoint, associates with septin proteins, negatively regulates Swe1p by phosphorylation, shows structural homology to bud neck kinases Gin4p and Hsl1p 5.65672994337471 73.2278079986572 17.4304232597351 KCC4 135 // septin checkpoint // inferred from genetic interaction /// 135 // septin checkpoint // inferred from mutant phenotype /// 921 // septin ring assembly // inferred from genetic interaction /// 921 // septin ring assembly // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from sequence similarity /// 7117 // budding cell bud growth // inferred from mutant phenotype /// 7117 // budding cell bud growth // inferred from genetic interaction /// 7120 // axial bud site selection // traceable author statement 5935 // bud neck // inferred from direct assay 4672 // protein kinase activity // inferred from sequence similarity 14.9553899765015 84.5986022949219 61.8570137023926 19.9054565429688 0.0676269978284836 0.00195312988944352 0.00195312988944352 0.0561522990465164 A P P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL024W /GEN=KCC4 /DB_XREF=GI:10383767 /SEG=NC_001135:+79161,82274 /DEF=Protein kinase of the bud neck involved in the septin checkpoint, associates with septin proteins, negatively regulates Swe1p by phosphorylation, shows structural homology to bud neck kinases Gin4p and Hsl1p /NOTE=Kcc4p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 9925642]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 9813093]; go_process: axial budding [goid GO:0007120] [evidence TAS] [pmid 10652251]; go_process: bud growth [goid GO:0007117] [evidence IGI,IMP] [pmid 9925642]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence ISS] [pmid 9813093]; go_process: septin checkpoint [goid GO:0000135] [evidence IGI,IMP] [pmid 9925642]; go_process: septin ring assembly [goid GO:0000921] [evidence IGI,IMP] [pmid 9925642] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 5.0E-70 /// hanks // 2.2.12 // CaMK Group; CaMK II KIN1/SNF1/Nim1; YCL24 // 1.0E-157 --- --- S0000529 // KCC4 SGDID:S0000529, Chr III from 79161-82274, Verified ORF // sgd // 11 // --- /// GENSCAN00000022448 // cdna:Genscan chromosome:SGD1:III:79161:82337:1 // ensembl // 11 // --- /// GENEFINDER00000023310 // cdna:GeneFinder chromosome:SGD1:III:79161:82337:1 // ensembl // 11 // --- /// YCL024W // cdna:known chromosome:SGD1:III:79161:82274:1 gene:YCL024W // ensembl // 11 // --- YCL022C // ensembl // 8 // Negative Strand Matching Probes No cerevisiae_gene 3.06944627688687 5.65672994337471 -1.1034090938675 4.13610168638764 1.33098879897114 Max fold change at or above threshold 4 5.65672994337471 Max fold change at or above threshold -0.904339180114423 1.16919918816894 0.492097214659708 -0.756957222714222 45.3291156291962 33.5866523540997 0.740950973516606 APPAPM No 2 0 APPM 1 2 1 No No 1 < x = 2
1778989_at YOR079C.S1 Golgi membrane protein involved in manganese homeostasis; overproduction suppresses the sod1 (copper, zinc superoxide dismutase) null mutation 5.65593633628843 76.6738967895508 415.876953125 ATX2 30026 // manganese ion homeostasis // inferred from genetic interaction /// 30026 // manganese ion homeostasis // inferred from mutant phenotype 139 // Golgi membrane // inferred from direct assay 5384 // manganese ion transporter activity // inferred from genetic interaction /// 5384 // manganese ion transporter activity // inferred from mutant phenotype 388.456268310547 84.666633605957 68.6811599731445 443.297637939453 0.000244141003349796 0.00585938012227416 0.014160200022161 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR079C /GEN=ATX2 /DB_XREF=GI:6324653 /SEG=NC_001147:-473476,474417 /DEF=Golgi membrane protein involved in manganese homeostasis; overproduction suppresses the sod1 (copper, zinc superoxide dismutase) null mutation /NOTE=Atx2p; go_component: Golgi membrane [goid GO:0000139] [evidence IDA] [pmid 8887660]; go_function: manganese ion transporter activity [goid GO:0005384] [evidence IGI,IMP] [pmid 8887660]; go_process: manganese ion homeostasis [goid GO:0030026] [evidence IGI,IMP] [pmid 8887660] --- --- --- --- --- S0005605 // span:5-27,70-92,102-124,151-169,184-206,218-240,250-272,293-310 // numtm:8 S0005605 // ATX2 SGDID:S0005605, Chr XV from 474417-473476, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017520 // cdna:Genscan chromosome:SGD1:XV:473476:474417:-1 // ensembl // 11 // --- /// YOR079C // cdna:known chromosome:SGD1:XV:473476:474417:-1 gene:YOR079C // ensembl // 11 // --- --- No cerevisiae_gene -1.04716925563154 -4.58806795270074 -1.41261778533604 -5.65593633628843 1.14117771832443 Max fold change at or above threshold 4 5.65593633628843 Max fold change at or above threshold 0.720915549156692 -0.819423262781654 -0.900476210778981 0.998983924403943 246.275424957275 197.222606059185 0.800821300352644 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1777205_at SPBC1709.11c.S1 --- 5.65446942529379 --- --- --- --- 5.1571946144104 1.12564027309418 2.95367670059204 2.95173954963684 0.432372987270355 0.805419981479645 0.567627012729645 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1709.11c /GEN=png2 /DEF=zinc finger protein --- --- --- --- --- --- SPBC1709.11c // |png2||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.30613436765611 -4.58156547671684 -5.65446942529379 -1.74602542430479 -1.74717129600574 Max fold change at or above threshold 3 5.65446942529379 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775898_at SPAC977.13c.S1 --- 5.65442269477767 --- --- --- --- 0.545728087425232 0.377302438020706 0.98922872543335 2.2590606212616 0.870360970497131 0.845458984375 0.601073980331421 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC977.13c /DEF=hydrolase --- --- --- --- --- --- SPAC977.13c // |||hydrolase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.27376226517885 -1.44639427799108 5.65442269477767 1.81267695071473 4.13953518852207 Max fold change at or above threshold 0 5.65442269477767 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773895_at SPAC12B10.10.S1 --- 5.65376968686685 --- --- --- --- 0.861297786235809 4.86957931518555 1.65995216369629 0.2220468968153 0.850341975688934 0.334473013877869 0.828612983226776 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12B10.10 /DEF=sequence orphan --- --- --- --- --- --- SPAC12B10.10 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.02375451542849 5.65376968686685 -1.45744965405919 1.92726858262448 -3.87890035208302 Max fold change at or above threshold 1 5.65376968686685 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779684_at YPL039W.S1 Hypothetical protein 5.65058033210379 184.14013671875 819.515350341797 --- --- --- --- 755.1015625 133.632568359375 234.647705078125 883.929138183594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL039W /GEN=ISM1 /DB_XREF=GI:6325218 /SEG=NC_001148:+479220,480170 /DEF=Hypothetical ORF /NOTE=Ypl039wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.1.1.Truncated hemoglobin // All alpha proteins; Globin-like; Globin-like; Truncated hemoglobin // 0.129999995231628 /// scop // a.4.1.Myb // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb // 3.20000004768372 --- S0005960 // YPL039W SGDID:S0005960, Chr XVI from 479222-480172, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017158 // cdna:Genscan chromosome:SGD1:XVI:479222:480172:1 // ensembl // 11 // --- /// YPL039W // cdna:known chromosome:SGD1:XVI:479222:480172:1 gene:YPL039W // ensembl // 11 // --- --- No cerevisiae_gene -1.49828760508016 -5.65058033210379 1.32752766339379 -3.2180223635624 1.17060960019348 Max fold change at or above threshold 4 5.65058033210379 Max fold change at or above threshold 0.679250253698708 -0.987455660292179 -0.716545080103778 1.02475048669725 501.827743530273 372.872615932905 0.74302909861023 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773649_at YBR021W.S1 Uracil permease, localized to the plasma membrane; expression is tightly regulated by uracil levels and environmental cues 5.6488236303716 301.901733398438 1558.39562988281 FUR4 15857 // uracil transport // inferred from direct assay 5886 // plasma membrane // inferred from direct assay /// 45121 // lipid raft // inferred from direct assay 15505 // uracil permease activity // inferred from direct assay 1543.7763671875 273.291656494141 330.511810302734 1573.01489257813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR021W /GEN=FUR4 /DB_XREF=GI:6319495 /SEG=NC_001134:+281405,283306 /DEF=Uracil permease, localized to the plasma membrane; expression is tightly regulated by uracil levels and environmental cues /NOTE=Fur4p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 8948441]; go_function: uracil permease activity [goid GO:0015505] [evidence IDA] [pmid 8948441]; go_process: uracil transport [goid GO:0015857] [evidence IDA] [pmid 8948441] --- --- --- --- --- S0000225 // span:75-97,110-132,147-169,181-203,239-261,268-288,308-330,350-372,399-421,442-459,469-491,515-537,557-579 // numtm:13 S0000225 // FUR4 SGDID:S0000225, Chr II from 281443-283344, Verified ORF // sgd // 11 // --- /// GENSCAN00000021156 // cdna:Genscan chromosome:SGD1:II:281443:283344:1 // ensembl // 11 // --- /// GENEFINDER00000022171 // cdna:GeneFinder chromosome:SGD1:II:282424:283344:1 // ensembl // 11 // --- /// YBR021W // cdna:known chromosome:SGD1:II:281443:283344:1 gene:YBR021W // ensembl // 11 // --- --- No cerevisiae_gene -2.48214604301876 -5.6488236303716 -2.19827621196323 -4.67086596927798 1.0189396119879 Max fold change at or above threshold 4 5.6488236303716 Max fold change at or above threshold 0.845320533559725 -0.904872358349392 -0.826047083533536 0.885598908323203 930.148681640625 725.911250449377 0.780424962995155 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776722_at SPAC19G12.16c.S1 --- 5.64801715409314 --- --- --- --- 1.639817237854 8.31432151794434 9.26171588897705 2.14161992073059 0.559326171875 0.219482004642487 0.0375977009534836 0.456298828125 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19G12.16c /GEN=adg2 /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPAC19G12.16c // |adg2|SPAC23A1.01c|glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.5673956497136 5.07027327559083 2.17230584603538 5.64801715409314 1.30601134766292 Max fold change at or above threshold 2 5.64801715409314 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1774269_at SPBC660.05.S1 --- 5.64313269391981 --- --- --- --- 7.00158882141113 5.31754398345947 2.4065043926239 1.98831081390381 0.5 0.696289002895355 0.725830018520355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC660.05 /DEF=hypothetical protein --- --- --- --- --- --- SPBC660.05 // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.35000907056951 -1.31669598656635 -5.64313269391981 -2.90944360744633 -3.52137541698743 Max fold change at or above threshold 2 5.64313269391981 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772444_at SPAC144.10c.S1 --- 5.64274989826847 --- --- --- --- 6.41878366470337 8.77193737030029 8.13150978088379 1.1375275850296 0.0375977009534836 0.423828125 0.24609400331974 0.633789002895355 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC144.10c /GEN=gwt1 /DEF=involved in GPI anchor biosynthesis (PMID 12714589) --- --- --- --- --- --- SPAC144.10c // |gwt1||pig-W|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.58747229534524 1.36660430207935 1.10317108511782 1.26683032263552 -5.64274989826847 Max fold change at or above threshold 3 5.64274989826847 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1773753_at SPAC5D6.01.S1 --- 5.64221328753648 --- --- --- --- 0.391907930374146 0.245857074856758 0.117315195500851 0.529011487960815 0.725830018520355 0.989257991313934 0.533936023712158 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5D6.01 /GEN=rps2202 /DEF=40S ribosomal protein (S15a) --- --- --- --- --- --- SPAC5D6.01 // |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.64221328753648 -1.59404780441027 -1.01400581650527 -3.34064081554809 1.34983613997242 Max fold change at or above threshold 0 5.64221328753648 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779127_at SPBC119.12.S1 --- 5.64219528546921 --- --- --- --- 4.60817193984985 26.0002059936523 14.5038175582886 8.3280029296875 0.366210997104645 0.0375977009534836 0.194580003619194 0.149657994508743 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC119.12 /DEF=involved in intracellular protein transport --- --- --- --- --- --- D89266 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1755. // gb // 9 // --- /// SPBC119.12 // |||Golgi matrix protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.43210964547494 5.64219528546921 2.28144159630184 3.14741241160397 1.80722486886174 Max fold change at or above threshold 4 5.64219528546921 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1770966_at YJR120W.S1 Hypothetical protein 5.6405774109321 18.3897314071655 2.81635725498199 --- 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype /// 45333 // cellular respiration // inferred from mutant phenotype --- --- 3.56653237342834 20.117301940918 16.6621608734131 2.06618213653564 0.219482004642487 0.00585938012227416 0.018554700538516 0.303710997104645 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR120W /GEN=ILM1 /DB_XREF=GI:6322580 /SEG=NC_001142:+647041,647391 /DEF=Hypothetical ORF /NOTE=Yjr120wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cellular respiration [goid GO:0045333] [evidence IMP] [pmid 10628851]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence IMP] [pmid 10628851] --- --- --- --- --- --- S0003881 // YJR120W SGDID:S0003881, Chr X from 647041-647391, Uncharacterized ORF // sgd // 11 // --- /// YJR120W // cdna:known chromosome:SGD1:X:647041:647391:1 gene:YJR120W // ensembl // 11 // --- --- No cerevisiae_gene 3.46983515943216 5.6405774109321 1.20768847313956 4.67180979417173 -1.72614616609179 Max fold change at or above threshold 3 5.6405774109321 Max fold change at or above threshold -0.771390785206431 1.04301828697096 0.664241984577884 -0.935869486342411 10.6030443310738 9.12185119733105 0.86030491927664 APPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1773095_at SPAC8F11.04.S1 --- 5.63400052911496 --- --- --- --- 3.87782454490662 5.22787284851074 6.30270004272461 0.704549551010132 0.274170011281967 0.398925989866257 0.366210997104645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8F11.04 /DEF=hypothetical protein --- --- --- --- --- --- SPAC8F11.04 // |||U3 snoRNP protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -5.63400052911496 1.34814579359382 1.02543539643186 1.62531851808586 -5.50397702950328 Max fold change at or above threshold 3 5.63400052911496 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769941_at SPAPB1E7.01c.S1 --- 5.63135051251004 --- --- --- --- 5.48128032684326 9.35660362243652 3.24954509735107 1.12551879882813 0.466064006090164 0.274170011281967 0.5 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1E7.01c /DEF=sequence orphan --- --- --- --- --- --- SPAPB1E7.01c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.63135051251004 1.70701060053703 -2.60006842238894 -1.68678389209352 -4.87000335538624 Max fold change at or above threshold 3 5.63135051251004 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775774_at SPCC4B3.11c.S1 --- 5.62840111419649 --- --- --- --- 1.35775721073151 0.805039286613464 2.04052472114563 0.241233199834824 0.747314453125 0.780517995357513 0.533936023712158 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4B3.11c /DEF=BolA domain --- --- --- --- --- --- SPCC4B3.11c // |||BolA domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.8918497890007 -1.68657260994447 3.12886712574255 1.50286421240678 -5.62840111419649 Max fold change at or above threshold 0 5.62840111419649 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776089_at SPBC21B10.09.S1 --- 5.62634866997538 --- --- --- --- 12.340235710144 2.19329380989075 8.84719562530518 6.58698844909668 0.149657994508743 0.533936023712158 0.129638999700546 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21B10.09 /DEF=acetyl-coenzyme A transporter (predicted) --- --- --- --- --- --- SPBC21B10.09 // |||acetyl-CoA transporter |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.74668102022772 -5.62634866997538 -1.63734327169142 -1.39481890451794 -1.87342604370839 Max fold change at or above threshold 3 5.62634866997538 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770605_at SPAC3H8.03.S1 --- 5.62394729028423 --- --- --- --- 1.49232470989227 8.39275550842285 5.9971661567688 0.972322463989258 0.533936023712158 0.194580003619194 0.194580003619194 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H8.03 /DEF=mitochondrial ribosomal protein (predicted) (PMID 12392552) --- --- --- --- --- --- SPAC3H8.03 // |||mitochondrial large ribosomal subunit|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -3.69496428826267 5.62394729028423 1.79338351868395 4.01867376249618 -1.53480431149306 Max fold change at or above threshold 2 5.62394729028423 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774516_at YOL108C.S1 Transcription factor required for derepression of inositol-choline-regulated genes involved in phospholipid synthesis; forms a complex, with Ino2p, that binds the inositol-choline-responsive element through a basic helix-loop-helix domain 5.62365904058217 835.786987304688 184.493438720703 INO4 8654 // phospholipid biosynthesis // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from physical interaction /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence similarity 5634 // nucleus // inferred from curator 3677 // DNA binding // inferred from direct assay /// 3704 // specific RNA polymerase II transcription factor activity // inferred from mutant phenotype /// 3704 // specific RNA polymerase II transcription factor activity // inferred from sequence similarity /// 3704 // specific RNA polymerase II transcription factor activity // inferred from physical interaction 169.498870849609 953.203857421875 718.3701171875 199.488006591797 0.00122069998178631 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL108C /GEN=INO4 /DB_XREF=GI:6324464 /SEG=NC_001147:-111430,111885 /DEF=Transcription factor required for derepression of inositol-choline-regulated genes involved in phospholipid synthesis; forms a complex, with Ino2p, that binds the inositol-choline-responsive element through a basic helix-loop-helix domain /NOTE=Ino4p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 8195172]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IMP,IPI,ISS] [pmid 8195172]; go_process: phospholipid biosynthesis [goid GO:0008654] [evidence IMP] [pmid 2834106]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IMP,IPI,ISS] [pmid 8195172] --- --- --- --- --- --- S0005468 // INO4 SGDID:S0005468, Chr XV from 111885-111430, reverse complement, Verified ORF // sgd // 10 // --- /// YOL108C // cdna:known chromosome:SGD1:XV:111430:111885:-1 gene:YOL108C // ensembl // 10 // --- --- No cerevisiae_gene -2.24484620823883 5.62365904058217 -1.10802958209338 4.23820001624014 1.17692823316089 Max fold change at or above threshold 4 5.62365904058217 Max fold change at or above threshold -0.87738383517563 1.1411911340242 0.536334053767541 -0.800141352616112 510.140213012695 388.246658425042 0.761058721742801 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776186_at SPBC8D2.19.S1 --- 5.62207940505778 --- --- --- --- 0.780934751033783 0.400861471891403 1.15895295143127 3.47963714599609 0.533936023712158 0.932372987270355 0.466064006090164 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8D2.19 /GEN=mde3 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPBC8D2.19 // |mde3||serine/threonine protein kinase Mde3|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 5.62207940505778 -1.9481412053622 4.21243435404194 1.4840586232039 4.4557335185684 Max fold change at or above threshold 1 5.62207940505778 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773454_at YHR171W.S1 Autophagy-related protein that is a member of the E1 family of ubiquitin-activating enzymes; mediates the conjugation of Atg12p with Atg5p, a required step in the formation of autophagosomes 5.62155957634979 305.946441650391 792.554382324219 ATG7 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6914 // autophagy // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 16020 // membrane // inferred from direct assay 8640 // ubiquitin-like conjugating enzyme activity // inferred from mutant phenotype /// 8640 // ubiquitin-like conjugating enzyme activity // inferred from sequence similarity 756.718566894531 260.215240478516 351.677642822266 828.390197753906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR171W /GEN=ATG7 /DB_XREF=GI:6321965 /SEG=NC_001140:+445711,447603 /DEF=autophagy /NOTE=Atg7p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: ubiquitin-like conjugating enzyme activity [goid GO:0008640] [evidence IMP,ISS] [pmid 10233150]; go_process: autophagy [goid GO:0006914] [evidence IMP] [pmid 10233150]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 10233150] --- --- --- --- --- --- S0001214 // ATG7 SGDID:S0001214, Chr VIII from 445712-447604, Verified ORF // sgd // 11 // --- /// GENSCAN00000016697 // cdna:Genscan chromosome:SGD1:VIII:445712:447604:1 // ensembl // 11 // --- /// GENEFINDER00000020316 // cdna:GeneFinder chromosome:SGD1:VIII:446342:447604:1 // ensembl // 11 // --- /// YHR171W // cdna:known chromosome:SGD1:VIII:445712:447604:1 gene:YHR171W // ensembl // 11 // --- --- No cerevisiae_gene -5.62155957634979 -2.90804860431305 1.53143217290875 -2.15173919166926 1.09471372052295 Max fold change at or above threshold 4 5.62155957634979 Max fold change at or above threshold 0.728162587315189 -1.01444290765994 -0.69343219851053 0.979712518855279 549.250411987305 284.920096859389 0.518743528709404 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778114_at SPBC16E9.18.S1 --- 5.62105968554423 --- --- --- --- 0.671705722808838 1.22219443321228 0.616866290569305 0.119498059153557 0.943848013877869 0.753906011581421 0.828612983226776 0.9970703125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16E9.18 /DEF=phosphatidylserine decarboxylase proenzyme 1 --- --- --- --- --- --- SPBC16E9.18 // ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.34285857784902 1.8195385147256 -1.12684910872809 -1.08890003081368 -5.62105968554423 Max fold change at or above threshold 0 5.62105968554423 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774538_at SPAC1782.10c.S1 --- 5.62052955029623 --- --- --- --- 2.83879017829895 6.44603109359741 1.2522646188736 2.3249671459198 0.466064006090164 0.107421875 0.725830018520355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1782.10c /GEN=nhp2 /DEF=localization nucleolus (predicted) --- --- --- --- --- --- AJ010068 // Schizosaccharomymces pombe mRNA for nhp2+ protein. // gb // 9 // --- /// SPAC1782.10c // |nhp2||RNA binding protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.62052955029623 2.27069656041292 1.46246418732771 -2.26692516542743 -1.2210022766476 Max fold change at or above threshold 2 5.62052955029623 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-AF292559-3_s_at AFFX-Sc-AF292559-3 --- 5.61591756165246 --- --- --- --- 0.393358051776886 0.654524207115173 2.20906639099121 0.0948367416858673 0.904784977436066 0.696289002895355 0.466064006090164 0.989257991313934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL AF292559 /FEA=CDS_3 /DB_XREF=AAG34046.1 GI:11321079 /PROD=repB /GEN=repB --- --- --- --- --- --- AFFX-Sc-AF292559-3 // --- // affx // --- // --- --- No No -1.54194376251911 1.66394002654462 2.85243125452973 5.61591756165246 -3.93358051776886 Max fold change at or above threshold 0 5.61591756165246 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774862_at SPBC211.07c.S1 --- 5.61201319884336 --- --- --- --- 1.13099789619446 5.88411092758179 1.80868232250214 6.34717512130737 0.696289002895355 0.49169921875 0.398925989866257 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC211.07c /GEN=ubc8 /DEF=ubiquitin conjugating enzyme --- --- --- --- --- --- SPBC211.07c // |ubc8||ubiquitin conjugating enzyme|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.10328560807075 5.20258344191482 3.7395448199304 1.59919158876239 5.61201319884336 Max fold change at or above threshold 2 5.61201319884336 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778154_at YJL037W.S1 Hypothetical protein 5.60764694606293 78.3967609405518 15.8683815002441 --- --- --- --- 17.701078414917 99.2613983154297 57.5321235656738 14.0356845855713 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL037W /GEN=NUP192 /DB_XREF=GI:6322423 /SEG=NC_001142:+376578,377252 /DEF=Hypothetical ORF /NOTE=Yjl037wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003574 // span:200-222 // numtm:1 S0003574 // YJL037W SGDID:S0003574, Chr X from 376578-377252, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024110 // cdna:Genscan chromosome:SGD1:X:376578:377252:1 // ensembl // 11 // --- /// YJL037W // cdna:known chromosome:SGD1:X:376578:377252:1 gene:YJL037W // ensembl // 11 // --- GENEFINDER00000024484 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.67388562971439 5.60764694606293 1.98952035043941 3.25020443484339 -1.2611482045638 Max fold change at or above threshold 4 5.60764694606293 Max fold change at or above threshold -0.736771723281853 1.30496424443397 0.260336645287726 -0.828529166439843 47.1325712203979 39.9465558672396 0.847536105773742 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771441_at SPAC890.07c.S1 --- 5.60685761912968 --- --- --- --- 0.482857465744019 2.7073130607605 0.603060722351074 0.280032187700272 0.995850026607513 0.696289002895355 0.919434010982513 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC890.07c /DEF=arginine N-methyltransferase activity --- --- --- --- --- --- SPAC890.07c // |rmt1|prmt1|type 1 arginine N-methyltransferase Rmt1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.23006489923352 5.60685761912968 -1.83319454074437 1.24894148922776 -1.72429273116574 Max fold change at or above threshold 1 5.60685761912968 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780137_at YDR281C.S1 Protein of unknown function, expression is regulated by phosphate levels 5.60168686354944 6.22312939167023 5.91623502969742 PHM6 --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 1.79234039783478 9.95081424713135 2.49544453620911 10.0401296615601 0.5 0.0952147990465164 0.366210997104645 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR281C /GEN=PHM6 /DB_XREF=GI:6320487 /SEG=NC_001136:-1021999,1022313 /DEF=Protein of unknown function, expression is regulated by phosphate levels /NOTE=Phm6p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002689 // span:75-97 // numtm:1 S0002689 // PHM6 SGDID:S0002689, Chr IV from 1022315-1022001, reverse complement, Verified ORF // sgd // 11 // --- /// YDR281C // cdna:known chromosome:SGD1:IV:1022001:1022315:-1 gene:YDR281C // ensembl // 11 // --- --- No cerevisiae_gene 3.51054219882475 5.55185513820497 5.10992008708075 1.39228270434774 5.60168686354944 Max fold change at or above threshold 2 5.60168686354944 Max fold change at or above threshold -0.941661118601621 0.854435136304302 -0.786872032668365 0.874098014965684 6.06968221068382 4.5423366520654 0.74836482280242 APAAAP No 4 0 AAAP 3 1 0 No No x = 1
1774740_at SPCC1442.03.S1 --- 5.60163727049299 --- --- --- --- 7.39031314849854 1.31931304931641 3.66543793678284 2.35969758033752 0.017578125 0.5 0.219482004642487 0.366210997104645 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1442.03 /DEF=mitochondrial carrier (predicted) --- --- --- --- --- --- SPCC1442.03 // ||SPCC1450.19|mitochondrial transporter|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.70271905715124 -5.60163727049299 -3.75897178778119 -2.01621559987046 -3.13188995491594 Max fold change at or above threshold 2 5.60163727049299 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1778732_at YBL044W.S1 Hypothetical protein 5.60073230893999 23.0902223587036 16.2566585540771 --- --- --- --- 16.4254493713379 27.6618213653564 18.5186233520508 16.0878677368164 0.001953125 0.00195312988944352 0.0107421996071935 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL044W /GEN=COR1 /DB_XREF=GI:6319427 /SEG=NC_001134:+135963,136331 /DEF=Hypothetical ORF /NOTE=Ybl044wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000140 // YBL044W SGDID:S0000140, Chr II from 136001-136369, Uncharacterized ORF // sgd // 11 // --- /// YBL044W // cdna:known chromosome:SGD1:II:136001:136369:1 gene:YBL044W // ensembl // 11 // --- --- No cerevisiae_gene 5.60073230893999 1.68408307985934 -1.34317681591892 1.12743480762027 -1.02098361573106 Max fold change at or above threshold 4 5.60073230893999 Max fold change at or above threshold -0.597822588822054 1.47033487175276 -0.212554693918173 -0.659957589012534 19.6734404563904 5.43303506053913 0.276160901931841 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1772762_s_at SPCC1682.06.S1 --- 5.60028309539603 --- --- --- --- 0.973060071468353 5.44941186904907 3.24518895149231 2.28991365432739 0.753906011581421 0.0561522990465164 0.194580003619194 0.219482004642487 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1682.06 /DEF=sequence orphan --- --- --- --- --- --- SPCC1682.06 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPBC18H10.18c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.7450798729501 5.60028309539603 -1.3443588358657 3.33503454375155 2.3533117034305 Max fold change at or above threshold 2 5.60028309539603 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1773572_at SPAC1687.23c.S1 --- 5.59755027654625 --- --- --- --- 4.52624893188477 1.89775538444519 7.7531909942627 2.92235326766968 0.149657994508743 0.466064006090164 0.0805663987994194 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.23c /DEF=dubious --- --- --- --- --- --- SPAC1687.23c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -5.59755027654625 -2.38505392685687 1.57959234456132 1.71293959102559 -1.54883702184783 Max fold change at or above threshold 3 5.59755027654625 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769830_at SPBC32H8.12c.S1 --- 5.59433694635412 --- --- --- --- 17.3913955688477 20.4782733917236 12.5765657424927 7.80360460281372 0.0239257998764515 0.0461426004767418 0.030273400247097 0.0461426004767418 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32H8.12c /GEN=act1 /DEF=actin (PMID 1524835) --- --- --- --- --- --- SPBC32H8.12c // |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.42267792075047 1.17749454381944 -5.59433694635412 -1.38284138332669 -2.22863618212754 Max fold change at or above threshold 4 5.59433694635412 Max fold change at or above threshold PPPAPP No 4 0 PPPP 0 4 0 No No 3 < x
1773730_at SPCC1739.05.S1 --- 5.58918695048511 --- --- --- --- 1.27913308143616 4.63250541687012 7.14931392669678 3.58123254776001 0.850341975688934 0.601073980331421 0.432372987270355 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1739.05 /DEF=SET domain --- --- --- --- --- --- SPCC1739.05 // |set5||SET domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.39771369455513 3.62159769307892 1.07683036186087 5.58918695048511 2.79973413222896 Max fold change at or above threshold 3 5.58918695048511 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773974_at YLR273C.S1 Putative type 1 phosphatase regulatory subunit; interacts with Gsy2p; similar to Gac1p 5.58848200586828 65.9706230163574 183.553497314453 PIG1 5979 // regulation of glycogen biosynthesis // inferred from genetic interaction 164 // protein phosphatase type 1 complex // inferred from physical interaction 19888 // protein phosphatase regulator activity // inferred from sequence similarity 164.715286254883 64.1090850830078 67.832160949707 202.391708374023 0.000244141003349796 0.000244141003349796 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR273C /GEN=PIG1 /DB_XREF=GI:6323303 /SEG=NC_001144:-689085,691031 /DEF=Putative type 1 phosphatase regulatory subunit; interacts with Gsy2p /NOTE=Pig1p; go_component: protein phosphatase type 1 complex [goid GO:0000164] [evidence IPI] [pmid 10790385]; go_function: protein phosphatase regulator activity [goid GO:0019888] [evidence ISS] [pmid 9046081]; go_process: regulation of glycogen biosynthesis [goid GO:0005979] [evidence IGI] [pmid 9046081] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 4.59999990463257 --- S0004263 // PIG1 SGDID:S0004263, Chr XII from 691031-689085, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018033 // cdna:Genscan chromosome:SGD1:XII:689085:691031:-1 // ensembl // 11 // --- /// GENEFINDER00000024748 // cdna:GeneFinder chromosome:SGD1:XII:689085:691031:-1 // ensembl // 11 // --- /// YLR273C // cdna:known chromosome:SGD1:XII:689085:691031:-1 gene:YLR273C // ensembl // 11 // --- --- No cerevisiae_gene -5.58848200586828 -2.56929709793255 -1.05365512031141 -2.42827714683906 1.22873664597735 Max fold change at or above threshold 4 5.58848200586828 Max fold change at or above threshold 0.573844400259785 -0.87115293348731 -0.817678747621494 1.11498728084902 124.762060165405 69.623797097942 0.558052640407165 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772842_at SPAC23H4.06.S1 --- 5.58289971108803 --- --- --- --- 7.06670999526978 1.94322073459625 1.26577770709991 2.50881218910217 0.432372987270355 0.601073980331421 0.567627012729645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H4.06 /GEN=gln1 /DEF=glutamate-ammonia ligase (glutamine synthetase) (PMID 7773104) --- --- --- --- --- --- SPAC23H4.06 // |gln1||glutamate-ammonia ligase Gln1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.04750456563157 -3.63659664054482 -3.90913430605152 -5.58289971108803 -2.81675528601395 Max fold change at or above threshold 2 5.58289971108803 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769497_at SPBC3D6.11c.S1 --- 5.5804341404695 --- --- --- --- 6.46808195114136 1.32346415519714 9.33193397521973 3.35489320755005 0.24609400331974 0.533936023712158 0.111571997404099 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3D6.11c /GEN=slx8 /DEF=zinc finger protein --- --- --- --- --- --- SPBC3D6.11c // |slx8||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.31304605986991 -4.88723621697021 -5.5804341404695 1.44276681181707 -1.92795464743414 Max fold change at or above threshold 3 5.5804341404695 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777522_at SPBC18A7.01.S1 --- 5.57980934960675 --- --- --- --- 8.95600318908691 7.64671659469604 4.76296806335449 5.77696657180786 0.0561522990465164 0.053955078125 0.0805663987994194 0.0239257998764515 M M A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18A7.01 /DEF=aminopeptidase (predicted) --- --- --- --- --- --- SPBC18A7.01 // ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.57980934960675 -1.17122206350619 -2.33794735862337 -1.88034080219705 -1.55029513807351 Max fold change at or above threshold 4 5.57980934960675 Max fold change at or above threshold MAMAAP No 4 0 MMAP 1 1 2 No No x = 1
1775626_at YBL039C.S1 Major CTP synthase isozyme (see also URA8), catalyzes the ATP-dependent transfer of the amide nitrogen from glutamine to UTP, forming CTP, the final step in de novo biosynthesis of pyrimidines; involved in phospholipid biosynthesis 5.57945661739854 205.590797424316 358.753463745117 URA7 6241 // CTP biosynthesis // traceable author statement /// 8654 // phospholipid biosynthesis // traceable author statement /// 19856 // pyrimidine base biosynthesis // traceable author statement 5829 // cytosol // traceable author statement 3883 // CTP synthase activity // inferred from sequence similarity /// 3883 // CTP synthase activity // inferred from mutant phenotype 378.320007324219 201.020736694336 210.160858154297 339.186920166016 0.000732421991415322 0.00585938012227416 0.00292969006113708 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL039C /GEN=URA7 /DB_XREF=GI:6319432 /SEG=NC_001134:-143954,145693 /DEF=Catalyzes the ATP-dependent transfer of amide nitrogen from glutamine to UTP to form CTP in last step of pyrimidine biosynthesis, very similar to URA8p but appears to be responsible for the majority of CTP synthesis /NOTE=Ura7p; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 9668079]; go_function: CTP synthase activity [goid GO:0003883] [evidence IMP,ISS] [pmid 1753946]; go_process: CTP biosynthesis [goid GO:0006241] [evidence TAS] [pmid 7797479]; go_process: phospholipid biosynthesis [goid GO:0008654] [evidence TAS] [pmid 9668079]; go_process: pyrimidine base biosynthesis [goid GO:0019856] [evidence TAS] [pmid 1753946] --- --- --- --- --- --- S0000135 // URA7 SGDID:S0000135, Chr II from 145731-143992, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000021106 // cdna:Genscan chromosome:SGD1:II:143992:145731:-1 // ensembl // 10 // --- /// GENEFINDER00000022304 // cdna:GeneFinder chromosome:SGD1:II:143992:145659:-1 // ensembl // 10 // --- /// YBL039C // cdna:known chromosome:SGD1:II:143992:145731:-1 gene:YBL039C // ensembl // 10 // --- --- No cerevisiae_gene 5.57945661739854 -1.88199493020204 -2.05921322503386 -1.80014494919155 -1.11537321999047 Max fold change at or above threshold 4 5.57945661739854 Max fold change at or above threshold 1.06905190094568 -0.902308556828068 -0.80068109969639 0.633937755578782 282.172130584717 89.9375200160536 0.318732823931567 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1774734_at SPBC1709.05.S1 --- 5.57808844016573 --- --- --- --- 2.73600172996521 15.2616596221924 7.23072338104248 5.07483148574829 0.567627012729645 0.129638999700546 0.194580003619194 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1709.05 /GEN=sks2 /DEF=heat shock protein 70 family (PMID 8973306) --- --- --- --- --- --- SPBC1709.05 // |sks2|hsc1|heat shock protein 70 family |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.35184582135541 5.57808844016573 1.59599648751096 2.64280658226573 1.85483489654549 Max fold change at or above threshold 4 5.57808844016573 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771295_at SPCC622.17.S1 --- 5.57692741438003 --- --- --- --- 1.78115403652191 9.9333667755127 3.44828414916992 3.07616233825684 0.533936023712158 0.5 0.274170011281967 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC622.17 /GEN=apn1 /DEF=AP endonuclease --- --- --- --- --- --- AY483157 // Schizosaccharomyces pombe AP-endonuclease-like protein (apn1) mRNA, complete cds. // gb // 11 // --- /// U33625 // Schizosaccharomyces pombe APN1 apurinic/apyrimidic endonuclease (SPAPN1) mRNA, complete cds. // gb // 9 // --- /// SPCC622.17 // |apn1||AP endonuclease|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.48981491229438 5.57692741438003 3.1804333234302 1.93598312019293 1.72706137435688 Max fold change at or above threshold 3 5.57692741438003 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776279_at SPCC417.09c.S1 --- 5.57660047146583 --- --- --- --- 1.72390687465668 1.70049011707306 5.50402069091797 3.44525599479675 0.633789002895355 0.780517995357513 0.567627012729645 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC417.09c /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPCC417.09c // |||transcription factor |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.57660047146583 -1.01377059316518 3.27563554811126 3.19275987110041 1.9985163035462 Max fold change at or above threshold 2 5.57660047146583 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776491_at SPAC3C7.01c.S1 --- 5.57556456361475 --- --- --- --- 1.57468390464783 8.42912673950195 8.77975177764893 4.49362754821777 0.567627012729645 0.0239257998764515 0.0805663987994194 0.144775390625 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3C7.01c /DEF=inositol polyphosphate phosphatase (predicted) --- --- --- --- --- --- SPAC3C7.01c // ||SPAC732.03c|inositol polyphosphate phosphatase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.18232280845937 5.35290080416939 4.44633074341117 5.57556456361475 2.85366957454408 Max fold change at or above threshold 3 5.57556456361475 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1773290_at YLR014C.S1 Zinc finger transcription factor containing a Zn(2)-Cys(6) binuclear cluster domain, positively regulates transcription of genes involved in uracil biosynthesis; activity may be modulated by interaction with Tup1p 5.5748863318247 59.2683448791504 332.375610351563 PPR1 6355 // regulation of transcription, DNA-dependent // traceable author statement /// 46107 // uracil biosynthesis // traceable author statement 5634 // nucleus // traceable author statement 3700 // transcription factor activity // traceable author statement 306.528259277344 63.552921295166 54.9837684631348 358.222961425781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR014C /GEN=PPR1 /DB_XREF=GI:6323042 /SEG=NC_001144:-172267,174981 /DEF=Zinc finger transcription factor containing a Zn(2)-Cys(6) binuclear cluster domain, positively regulates transcription of genes involved in uracil biosynthesis; activity may be modulated by interaction with Tup1p /NOTE=Ppr1p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 9290251]; go_function: transcription factor activity [goid GO:0003700] [evidence TAS] [pmid 9290251]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence TAS] [pmid 9290251]; go_process: uracil biosynthesis [goid GO:0046107] [evidence TAS] [pmid 9290251] --- --- --- --- --- --- S0004004 // PPR1 SGDID:S0004004, Chr XII from 174981-172267, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017762 // cdna:Genscan chromosome:SGD1:XII:172267:174981:-1 // ensembl // 11 // --- /// GENEFINDER00000024545 // cdna:GeneFinder chromosome:SGD1:XII:172267:174981:-1 // ensembl // 11 // --- /// YLR014C // cdna:known chromosome:SGD1:XII:172267:174981:-1 gene:YLR014C // ensembl // 11 // --- --- No cerevisiae_gene -3.32112161015734 -4.82319699913872 -1.03208910457083 -5.5748863318247 1.16864579556322 Max fold change at or above threshold 4 5.5748863318247 Max fold change at or above threshold 0.695727363613002 -0.831237400983213 -0.885089757134319 1.02059979450453 195.821977615356 159.123081040072 0.812590511942584 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769577_at SPBC106.12c.S1 --- 5.57266728537493 --- --- --- --- 4.68137884140015 2.83319211006165 2.78041553497314 5.02911281585693 0.5 0.601073980331421 0.665526986122131 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC106.12c /DEF=RNA-binding protein --- --- --- --- --- --- SPBC106.12c // |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.57266728537493 -1.6523337138964 -5.065833744196 -1.68369755618034 1.07428024653369 Max fold change at or above threshold 4 5.57266728537493 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780165_at SPBC27.06c.S1 --- 5.57222782953029 --- --- --- --- 8.06473159790039 10.5903444290161 4.13607501983643 1.44730830192566 0.0952147990465164 0.0805663987994194 0.398925989866257 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC27.06c /DEF=conserved eukaryotic protein --- --- --- --- --- --- D89182 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1014. // gb // 11 // --- /// SPBC27.06c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.99367417175076 1.31316762380204 -1.08972816665598 -1.94985138306784 -5.57222782953029 Max fold change at or above threshold 3 5.57222782953029 Max fold change at or above threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1779499_at SPBC13E7.11.S1 --- 5.57070816925825 --- --- --- --- 5.70921802520752 1.19399738311768 5.76370096206665 3.09632134437561 0.149657994508743 0.533936023712158 0.129638999700546 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13E7.11 /DEF=rhomboid family protease --- --- --- --- --- --- SPBC13E7.11 // ||SPBC30D10.19c|rhomboid family protease|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.10500682446598 -4.78160011565523 -5.57070816925825 1.00954297709749 -1.84387128796505 Max fold change at or above threshold 3 5.57070816925825 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775352_at YGL120C.S1 RNA helicase in the DEAH-box family, involved in release of the lariat-intron from the spliceosome 5.57056385653217 83.6928215026855 422.450439453125 PRP43 391 // U2-type spliceosome dissembly // traceable author statement 5681 // spliceosome complex // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 4004 // ATP-dependent RNA helicase activity // traceable author statement /// 31202 // RNA splicing factor activity, transesterification mechanism // traceable author statement 391.016845703125 97.1922378540039 70.1934051513672 453.884033203125 0.000244141003349796 0.00415039015933871 0.00292969006113708 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL120C /GEN=PRP43 /DB_XREF=GI:6321318 /SEG=NC_001139:-281638,283941 /DEF=RNA helicase in the DEAH-box family, involved in release of the lariat-intron from the spliceosome /NOTE=Prp43p; go_component: spliceosome complex [goid GO:0005681] [evidence TAS] [pmid 9476892]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 9476892]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence TAS] [pmid 9476892]; go_process: U2-type spliceosome dissembly [goid GO:0000391] [evidence TAS] --- --- --- --- --- --- S0003088 // PRP43 SGDID:S0003088, Chr VII from 283943-281640, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019260 // cdna:Genscan chromosome:SGD1:VII:281640:283943:-1 // ensembl // 11 // --- /// GENEFINDER00000021558 // cdna:GeneFinder chromosome:SGD1:VII:281640:283943:-1 // ensembl // 11 // --- /// YGL120C // cdna:known chromosome:SGD1:VII:281640:283943:-1 gene:YGL120C // ensembl // 11 // --- --- No cerevisiae_gene 2.09243243496368 -4.02312833140529 -1.72173172926616 -5.57056385653217 1.16077871884766 Max fold change at or above threshold 4 5.57056385653217 Max fold change at or above threshold 0.698222379995363 -0.788997866525447 -0.925654938653348 1.01643042518343 253.071630477905 197.566304342946 0.780673455850653 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771312_at YLR131C.S1 Transcription factor that activates expression of early G1-specific genes, localizes to daughter cell nuclei after cytokinesis and delays G1 progression in daughters, localization is regulated by phosphorylation; potential Cdc28p substrate 5.56754926666788 150.785640716553 694.466339111328 ACE2 114 // G1-specific transcription in mitotic cell cycle // inferred from direct assay 5634 // nucleus // traceable author statement /// 5829 // cytosol // traceable author statement 16563 // transcriptional activator activity // inferred from direct assay 683.388000488281 122.744850158691 178.826431274414 705.544677734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR131C /GEN=ACE2 /DB_XREF=GI:6323160 /SEG=NC_001144:-404511,406823 /DEF=Transcription factor that activates expression of early G1-specific genes, localizes to daughter cell nuclei after cytokinesis and delays G1 progression in daughters, localization is regulated by phosphorylation; potential Cdc28p substrate /NOTE=Ace2p; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 10409653]; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 10409653]; go_function: transcriptional activator activity [goid GO:0016563] [evidence IDA] [pmid 10409653]; go_process: G1-specific transcription in mitotic cell cycle [goid GO:0000114] [evidence IDA] [pmid 10409653] --- --- --- --- --- --- S0004121 // ACE2 SGDID:S0004121, Chr XII from 406823-404511, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017920 // cdna:Genscan chromosome:SGD1:XII:404511:406823:-1 // ensembl // 11 // --- /// GENEFINDER00000024598 // cdna:GeneFinder chromosome:SGD1:XII:404511:406382:-1 // ensembl // 11 // --- /// YLR131C // cdna:known chromosome:SGD1:XII:404511:406823:-1 gene:YLR131C // ensembl // 11 // --- --- No cerevisiae_gene -1.76982558412937 -5.56754926666788 -1.85527251553927 -3.82151562058298 1.03242181195787 Max fold change at or above threshold 4 5.56754926666788 Max fold change at or above threshold 0.828189176138846 -0.952432885167808 -0.774315841360337 0.898559550389298 422.62598991394 314.858027715426 0.745003940196723 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770762_at SPBC32H8.13c.S1 --- 5.5673443660925 --- --- --- --- 1.33524954319 2.45767498016357 7.43379402160645 0.946766495704651 0.904784977436066 0.601073980331421 0.466064006090164 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32H8.13c /GEN=mok12 /DEF=alpha-1,3-glucan synthase --- --- --- --- --- --- SPBC32H8.13c // |mok12||alpha-1,3-glucan synthase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.05959084294481 1.84061098743537 2.16782656013342 5.5673443660925 -1.41032614614886 Max fold change at or above threshold 1 5.5673443660925 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772209_at YIL104C.S1 Essential nuclear protein, required for accumulation of box H/ACA snoRNAs and for rRNA processing; interacts with Naf1p 5.56519143797096 87.6170387268066 515.653213500977 SHQ1 16074 // snoRNA metabolism // inferred from mutant phenotype /// 16074 // snoRNA metabolism // inferred from physical interaction 5654 // nucleoplasm // inferred from direct assay --- 485.102569580078 87.1672744750977 88.0668029785156 546.203857421875 0.000244141003349796 0.00195312988944352 0.00292969006113708 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL104C /GEN=SHQ1 /DB_XREF=GI:6322087 /SEG=NC_001141:-169979,171502 /DEF=Essential nuclear protein, required for accumulation of box H/ACA snoRNAs and for rRNA processing; interacts with Naf1p /NOTE=Shq1p; go_component: nucleoplasm [goid GO:0005654] [evidence IDA] [pmid 12228251]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: snoRNA metabolism [goid GO:0016074] [evidence IMP,IPI] [pmid 12228251] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 0.579999983310699 --- S0001366 // SHQ1 SGDID:S0001366, Chr IX from 171502-169979, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016399 // cdna:Genscan chromosome:SGD1:IX:169979:171388:-1 // ensembl // 11 // --- /// GENEFINDER00000018996 // cdna:GeneFinder chromosome:SGD1:IX:169979:171502:-1 // ensembl // 11 // --- /// YIL104C // cdna:known chromosome:SGD1:IX:169979:171502:-1 gene:YIL104C // ensembl // 11 // --- --- No cerevisiae_gene -1.58257219736513 -5.56519143797096 1.11864744998393 -5.50834767668836 1.12595539927708 Max fold change at or above threshold 4 5.56519143797096 Max fold change at or above threshold 0.738647921355408 -0.863456915394102 -0.859835374445492 0.984644368484185 301.635126113892 248.382806154151 0.823454513916148 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774322_at SPBP19A11.07c.S1 --- 5.56398631576498 --- --- --- --- 0.222855865955353 0.349996864795685 0.474328994750977 1.23996698856354 0.981445014476776 0.932372987270355 0.696289002895355 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP19A11.07c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBP19A11.07c // ||SPBP4H10.02c|conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.33517710150657 1.57050775080699 1.53587752122883 2.12841153055403 5.56398631576498 Max fold change at or above threshold 0 5.56398631576498 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774746_at SPAC1F7.11c.S1 --- 5.55775897783057 --- --- --- --- 8.17208957672119 5.17243337631226 9.07512950897217 7.95208406448364 0.0676269978284836 0.390625 0.366210997104645 0.0107421996071935 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F7.11c /DEF=transcription factor (predicted) --- --- --- --- --- --- SPAC1F7.11c // |||transcription factor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.55775897783057 -1.57993133640855 -1.23982056071521 1.11050294098872 -1.02766639668966 Max fold change at or above threshold 4 5.55775897783057 Max fold change at or above threshold AAAPAP No 4 0 AAAP 3 1 0 No No x = 1
1770410_at YGR210C.S1 Hypothetical protein 5.55593544412327 2912.46789550781 542.482513427734 --- --- 5737 // cytoplasm // inferred from direct assay --- 532.197021484375 2956.85229492188 2868.08349609375 552.768005371094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR210C /GEN=TRX2 /DB_XREF=GI:6321649 /SEG=NC_001139:-913506,914741 /DEF=Hypothetical ORF /NOTE=Ygr210cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003442 // YGR210C SGDID:S0003442, Chr VII from 914743-913508, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019504 // cdna:Genscan chromosome:SGD1:VII:913508:914743:-1 // ensembl // 11 // --- /// GENEFINDER00000021703 // cdna:GeneFinder chromosome:SGD1:VII:913508:914743:-1 // ensembl // 11 // --- /// YGR210C // cdna:known chromosome:SGD1:VII:913508:914743:-1 gene:YGR210C // ensembl // 11 // --- --- No cerevisiae_gene 2.34030306269293 5.55593544412327 1.10206564217555 5.38913857145282 1.03865294816822 Max fold change at or above threshold 4 5.55593544412327 Max fold change at or above threshold -0.873219676461716 0.898130895768794 0.83328016654431 -0.858191385851388 1727.47520446777 1368.81728069466 0.792380276807728 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772480_at SPAC1687.15.S1 --- 5.55451220792819 --- --- --- --- 2.28417277336121 2.60706686973572 2.30278444290161 2.03030228614807 0.753906011581421 0.753906011581421 0.665526986122131 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.15 /GEN=gsk3 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPAC1687.15 // |gsk3|skp1|serine/threonine protein kinase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.12723810330617 1.14136150300897 -5.55451220792819 1.00814810059793 -1.12504073356228 Max fold change at or above threshold 1 5.55451220792819 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770403_at SPAC22F3.12c.S1 --- 5.5544994262396 --- --- --- --- 3.43300890922546 3.4899263381958 2.13080644607544 1.37240421772003 0.398925989866257 0.633789002895355 0.398925989866257 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F3.12c /GEN=rgs1 /DEF=regulator of G-protein signaling --- --- --- --- --- --- SPAC22F3.12c // |rgs1||regulator of G-protein signaling Rgs1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.13279384262163 1.01657945856691 -5.5544994262396 -1.61113127639934 -2.50145610520544 Max fold change at or above threshold 2 5.5544994262396 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773940_at SPBC649.04.S1 --- 5.55267257418342 --- --- --- --- 7.60968208312988 8.92945766448975 7.54154062271118 2.04479193687439 0.111571997404099 0.0561522990465164 0.219482004642487 0.366210997104645 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC649.04 /GEN=uvi15 /DEF=involved in stress response (required) --- --- --- --- --- --- SPBC649.04 // |uvi15||UV-induced protein Uvi15|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -5.55267257418342 1.17343373441129 1.29498817569896 -1.00903548277835 -3.72149456670972 Max fold change at or above threshold 3 5.55267257418342 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1771431_at SPAC6F12.06.S1 --- 5.54918931658876 --- --- --- --- 2.7798228263855 15.425763130188 8.85811614990234 4.25451803207397 0.366210997104645 0.00195312988944352 0.0676269978284836 0.12451171875 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F12.06 /DEF=Rho GDP dissociation inhibitor --- --- --- --- --- --- SPAC6F12.06 // |||Rho GDP dissociation inhibitor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.04086806361413 5.54918931658876 2.63104448916936 3.18657580109889 1.53049971087761 Max fold change at or above threshold 4 5.54918931658876 Max fold change at or above threshold APPAAA No 3 0 APAA 3 1 0 No No x = 1
1773558_at SPBC428.06c.S1 --- 5.5482142262145 --- --- --- --- 1.49191033840179 6.32674980163574 8.27743816375732 3.30434107780457 0.633789002895355 0.398925989866257 0.24609400331974 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC428.06c /DEF=sequence orphan --- --- --- --- --- --- SPBC428.06c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.51530775454221 4.24070377340052 1.23257947570489 5.5482142262145 2.21483891675711 Max fold change at or above threshold 3 5.5482142262145 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776873_at SPAC13G7.02c.S1 --- 5.5478900756368 --- --- --- --- 4.07015085220337 6.63088274002075 1.75909245014191 0.733639419078827 0.334473013877869 0.334473013877869 0.665526986122131 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G7.02c /GEN=ssa1 /DEF=heat shock protein 70 family --- --- --- --- --- --- SPAC13G7.02c // |ssa1||heat shock protein 70 family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.48942190211726 1.62914913495924 -1.75885009204073 -2.31377881922865 -5.5478900756368 Max fold change at or above threshold 2 5.5478900756368 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779959_at YER119C.S1 Vacuolar transporter, exports aspartate and glutamate from the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters 5.54523125840415 1328.42059326172 300.264678955078 AVT6 6865 // amino acid transport // inferred from genetic interaction /// 6865 // amino acid transport // inferred from sequence similarity 5773 // vacuole // inferred from mutant phenotype 15171 // amino acid transporter activity // inferred from mutant phenotype /// 15171 // amino acid transporter activity // inferred from sequence similarity 275.112731933594 1131.27746582031 1525.56372070313 325.416625976563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER119C /GEN=AVT6 /DB_XREF=GI:6320965 /SEG=NC_001137:-399492,400838 /DEF=Vacuolar transporter, exports aspartate and glutamate from the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters /NOTE=Avt6p; go_component: vacuole [goid GO:0005773] [evidence IMP] [pmid 11274162]; go_function: amino acid transporter activity [goid GO:0015171] [evidence IMP,ISS] [pmid 11274162]; go_process: amino acid transport [goid GO:0006865] [evidence IGI,ISS] [pmid 11274162] --- --- --- --- --- S0000921 // span:5-27,31-53,81-103,118-140,147-169,195-217,230-252,262-284,358-380,384-406,426-445 // numtm:11 S0000921 // AVT6 SGDID:S0000921, Chr V from 400838-399492, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016900 // cdna:Genscan chromosome:SGD1:V:399492:400769:-1 // ensembl // 11 // --- /// GENEFINDER00000019725 // cdna:GeneFinder chromosome:SGD1:V:399492:400769:-1 // ensembl // 11 // --- /// YER119C // cdna:known chromosome:SGD1:V:399492:400838:-1 gene:YER119C // ensembl // 11 // --- --- No cerevisiae_gene 1.59952019402558 4.11205056875877 -1.08775255854114 5.54523125840415 1.18284829527668 Max fold change at or above threshold 4 5.54523125840415 Max fold change at or above threshold -0.876246289766201 0.515017743791005 1.15573122290635 -0.794502676931157 814.342636108398 615.386233839211 0.755684654778773 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776202_at SPCC1393.10.S1 --- 5.54447241514181 --- --- --- --- 8.09281158447266 4.90578699111938 6.11416149139404 8.02111530303955 0.24609400331974 0.274170011281967 0.366210997104645 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1393.10 /GEN=ctr4 /DEF=copper transporter (high affinity) (PMID 11274192) --- --- --- --- --- --- SPCC1393.10 // |ctr4||copper transporter |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.84807946210199 -1.64964593838308 -5.54447241514181 -1.32361757141411 -1.00893844293772 Max fold change at or above threshold 4 5.54447241514181 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769702_at SPCC70.04c.S1 --- 5.54416016585775 --- --- --- --- 1.40942859649658 3.47755026817322 7.81409788131714 5.68855857849121 0.665526986122131 0.633789002895355 0.24609400331974 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC70.04c /DEF=sequence orphan --- --- --- --- --- --- SPCC70.04c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.96244163143069 2.46734760229597 -1.4287313369484 5.54416016585775 4.03607433014433 Max fold change at or above threshold 3 5.54416016585775 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773373_at SPBC725.11c.S1 --- 5.54330819402482 --- --- --- --- 3.70248174667358 7.6931471824646 0.667919158935547 3.50925350189209 0.334473013877869 0.533936023712158 0.850341975688934 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC725.11c /GEN=php2 /DEF=CCAAT-box binding factor complex (PMID 1899284) --- --- --- --- --- --- SPBC725.11c // |php2||CCAAT-box binding factor complex subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.85376097436945 2.07783527612968 -1.91309636530596 -5.54330819402482 -1.05506249254359 Max fold change at or above threshold 3 5.54330819402482 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770780_at YCL037C.S1 Cytoplasmic RNA-binding protein that associates with translating ribosomes; involved in heme regulation of Hap1p as a component of the HMC complex, also involved in the organization of actin filaments; contains a La motif 5.54313251512991 48.7399139404297 65.0015869140625 SRO9 6412 // protein biosynthesis // inferred from physical interaction 5844 // polysome // inferred from direct assay 3723 // RNA binding // inferred from direct assay 62.299934387207 40.1850357055664 57.294792175293 67.703239440918 0.000244141003349796 0.000732421991415322 0.00292969006113708 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL037C /GEN=SRO9 /DB_XREF=GI:37362625 /SEG=NC_001135:-57374,58678 /DEF=Associates with translating ribosomes; may function in the cytoplasm to modulate mRNA translation; may be involved in organization of actin filaments /NOTE=Sro9p; go_component: polysome [goid GO:0005844] [evidence IDA] [pmid 10564276]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 10564276]; go_process: protein biosynthesis [goid GO:0006412] [evidence IPI] [pmid 10564276] --- --- --- --- --- --- S0000542 // SRO9 SGDID:S0000542, Chr III from 58678-57374, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022437 // cdna:Genscan chromosome:SGD1:III:57374:58678:-1 // ensembl // 11 // --- /// GENEFINDER00000023291 // cdna:GeneFinder chromosome:SGD1:III:57374:58678:-1 // ensembl // 11 // --- /// YCL037C // cdna:known chromosome:SGD1:III:57374:58678:-1 gene:YCL037C // ensembl // 11 // --- --- No cerevisiae_gene 5.54313251512991 -1.55032671474216 1.08904712925665 -1.08735771650242 1.08673050954 Max fold change at or above threshold 4 5.54313251512991 Max fold change at or above threshold 0.455921893118033 -1.40120185649233 0.0356093877010574 0.909670575673237 56.8707504272461 11.9081448860263 0.209389621142071 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769396_at SPBC3F6.03.S1 --- 5.54033618760292 --- --- --- --- 15.2668828964233 2.7555878162384 11.8242111206055 6.89979028701782 0.0952147990465164 0.633789002895355 0.171387001872063 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3F6.03 /GEN=trr1 /DEF=thioredoxin reductase --- --- --- --- --- --- SPBC3F6.03 // |trr1|caf4|thioredoxin reductase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.7916489182275 -5.54033618760292 -1.53753412116434 -1.29115445763807 -2.21265897387468 Max fold change at or above threshold 4 5.54033618760292 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770067_at YJR140C.S1 Transcriptional corepressor involved in the cell cycle-regulated transcription of histone genes HTA1, HTB1, HHT1, and HHT2; involved in position-dependent gene silencing and nucleosome reassembly 5.53956302104138 95.6220779418945 317.163208007813 HIR3 83 // G1/S-specific transcription in mitotic cell cycle // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 3714 // transcription corepressor activity // inferred from mutant phenotype 293.073364257813 52.9055023193359 138.338653564453 341.253051757813 0.000732421991415322 0.000244141003349796 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR140C /GEN=HIR3 /DB_XREF=GI:6322600 /SEG=NC_001142:-690665,695611 /DEF=Transcriptional corepressor involved in the cell cycle-regulated transcription of histone genes HTA1, HTB1, HHT1, and HHT2; involved in position-dependent gene silencing and nucleosome reassembly /NOTE=Hir3p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9001207]; go_function: transcription corepressor activity [goid GO:0003714] [evidence IMP] [pmid 9001207]; go_process: G1/S-specific transcription in mitotic cell cycle [goid GO:0000083] [evidence IMP] [pmid 1406694] --- --- --- --- --- --- S0003901 // HIR3 SGDID:S0003901, Chr X from 695611-690665, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024524 // cdna:GeneFinder chromosome:SGD1:X:689360:695068:-1 // ensembl // 11 // --- /// GENSCAN00000024244 // cdna:Genscan chromosome:SGD1:X:690665:695611:-1 // ensembl // 11 // --- /// YJR140C // cdna:known chromosome:SGD1:X:690665:695611:-1 gene:YJR140C // ensembl // 11 // --- YJR140W-A // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene -1.43740147117912 -5.53956302104138 1.46868430731193 -2.11852115592022 1.1643946307506 Max fold change at or above threshold 4 5.53956302104138 Max fold change at or above threshold 0.646735850886354 -1.14518701555238 -0.507759442885473 1.0062106075515 206.392642974854 134.028013390881 0.649383676952141 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772817_at YGR159C.S1 Nucleolar protein that binds nuclear localization sequences, required for pre-rRNA processing and ribosome biogenesis 5.53634651705463 374.182739257813 537.082290649414 NSR1 28 // ribosomal small subunit assembly and maintenance // traceable author statement /// 6364 // rRNA processing // traceable author statement 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 3697 // single-stranded DNA binding // inferred from direct assay /// 3723 // RNA binding // inferred from sequence similarity 472.027069091797 353.915588378906 394.449890136719 602.137512207031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR159C /GEN=NSR1 /DB_XREF=GI:6321599 /SEG=NC_001139:-806415,807659 /DEF=Nucleolar protein that binds nuclear localization sequences, required for pre-rRNA processing and ribosome biogenesis /NOTE=Nsr1p; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 10690410]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 1706724]; go_function: single-stranded DNA binding [goid GO:0003697] [evidence IDA] [pmid 7800479]; go_process: rRNA processing [goid GO:0006364] [evidence TAS] [pmid 10690410]; go_process: ribosomal small subunit assembly and maintenance [goid GO:0000028] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0003391 // NSR1 SGDID:S0003391, Chr VII from 807661-806417, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021533 // cdna:GeneFinder chromosome:SGD1:VII:806417:807661:-1 // ensembl // 11 // --- /// YGR159C // cdna:known chromosome:SGD1:VII:806417:807661:-1 gene:YGR159C // ensembl // 11 // --- --- No cerevisiae_gene 5.53634651705463 -1.33372782830475 -1.27174839820567 -1.19667182294864 1.2756419104641 Max fold change at or above threshold 4 5.53634651705463 Max fold change at or above threshold 0.150032193869371 -0.930846518851646 -0.559903206308381 1.34071753129066 455.632514953613 109.273574659968 0.239828306965962 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770229_at SPAC56E4.03.S1 --- 5.52942333953542 --- --- --- --- 7.41658592224121 1.77171230316162 1.34129464626312 5.59819221496582 0.24609400331974 0.805419981479645 0.780517995357513 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC56E4.03 /DEF=aromatic aminotransferase (predicted) --- --- --- --- --- --- SPAC56E4.03 // |||aromatic aminotransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.03941143375379 -4.18611188114815 -4.17644733775349 -5.52942333953542 -1.32481801936243 Max fold change at or above threshold 2 5.52942333953542 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778569_at YOR008C-A.S1 diepoxybutane and mitomycin C resistance 5.52752873960909 8.30610275268555 3.4353945851326 --- --- --- --- 1.80024445056915 9.95090293884277 6.66130256652832 5.07054471969604 0.432372987270355 0.0561522990465164 0.0676269978284836 0.171387001872063 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR008C-A /GEN=SLG1 /DB_XREF=GI:6324582 /SEG=NC_001147:-342857,343081 /DEF=diepoxybutane and mitomycin C resistance /NOTE=Yor008c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0006431 // span:22-44 // numtm:1 S0006431 // YOR008C-A SGDID:S0006431, Chr XV from 343081-342857, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YOR008C-A // cdna:known chromosome:SGD1:XV:342857:343081:-1 gene:YOR008C-A // ensembl // 11 // --- --- No cerevisiae_gene 5.40381848347305 5.52752873960909 -1.27898770434185 3.7002211363142 2.81658677969704 Max fold change at or above threshold 3 5.52752873960909 Max fold change at or above threshold -1.20064006454094 1.20348645357456 0.233182581750957 -0.236028970784575 5.87074866890907 3.39027851773068 0.577486570952232 APMAAA No 4 0 AMAA 3 0 1 No No x = 1
1776195_at SPBC725.04.S1 --- 5.52688768306757 --- --- --- --- 6.54667806625366 7.10250854492188 5.7341947555542 1.1845144033432 0.171387001872063 0.0461426004767418 0.0952147990465164 0.398925989866257 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC725.04 /DEF=oxalyl-CoA decarboxylase (predicted) --- --- --- --- --- --- SPBC725.04 // |||oxalyl-CoA decarboxylase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -2.47328314545229 1.08490267476774 -1.04077348204509 -1.14169091656897 -5.52688768306757 Max fold change at or above threshold 3 5.52688768306757 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1774432_at SPBC27B12.06.S1 --- 5.52665908770943 --- --- --- --- 1.52329957485199 7.65116167068481 8.41875743865967 0.863591432571411 0.665526986122131 0.06494140625 0.129638999700546 0.466064006090164 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC27B12.06 /DEF=involved in GPI anchor biosynthesis (predicted) --- --- --- --- --- --- SPBC27B12.06 // |gpi13||GPI anchor biosynthesis protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.83673959590152 5.02275573170053 4.4333134064199 5.52665908770943 -1.76391232867636 Max fold change at or above threshold 2 5.52665908770943 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1776431_at SPBC21C3.19.S1 --- 5.52513968540429 --- --- --- --- 0.792062938213348 4.3762583732605 2.55007243156433 2.09491896629334 0.633789002895355 0.303710997104645 0.601073980331421 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21C3.19 /DEF=conserved fungal protein --- --- --- --- --- --- SPBC21C3.19 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.01898196884535 5.52513968540429 3.32541452225519 3.21953257567702 2.64488952231351 Max fold change at or above threshold 2 5.52513968540429 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770934_at SPAC22F8.09.S1 --- 5.5202751056537 --- --- --- --- 1.5558887720108 7.07959842681885 1.49683558940887 0.512167990207672 0.696289002895355 0.303710997104645 0.665526986122131 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F8.09 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC22F8.09 // |rrp16|nop53|ribosomal RNA processing protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.71112108035801 4.5501957171844 -5.5202751056537 -1.03945201665418 -3.03784852188815 Max fold change at or above threshold 1 5.5202751056537 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771336_at SPAC1002.01.S1 --- 5.519885212436 --- --- --- --- 5.42204332351685 9.94031620025635 7.34557723999023 4.61602973937988 0.171387001872063 0.303710997104645 0.334473013877869 0.03564453125 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1002.01 /DEF=conserved fungal protein --- --- --- --- --- --- SPAC1002.01 // ||SPAC1610.05|conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.519885212436 1.83331552463673 -3.52357372155651 1.35476181242052 -1.17461186986314 Max fold change at or above threshold 4 5.519885212436 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1777696_at SPBP8B7.24c.S1 --- 5.51948712679559 --- --- --- --- 1.43633198738098 7.72593927383423 0.443962275981903 2.23920917510986 0.5 0.274170011281967 0.919434010982513 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.24c /DEF=involved in autophagy (predicted) --- --- --- --- --- --- SPBP8B7.24c // |||autophagy related microtubule-associated protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.33153537116396 5.37893700182906 5.51948712679559 -3.23525683393769 1.55897744726333 Max fold change at or above threshold 1 5.51948712679559 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773471_at SPCC736.13.S1 --- 5.51939527477973 --- --- --- --- 1.37437236309052 5.05642127990723 7.58570432662964 5.26583480834961 0.850341975688934 0.432372987270355 0.432372987270355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC736.13 /DEF=short chain dehydrogenase --- --- --- --- --- --- SPCC736.13 // |||short chain dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.45306607965204 3.67907665760754 1.46216499143773 5.51939527477973 3.83144695700113 Max fold change at or above threshold 3 5.51939527477973 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776219_at SPAC25A8.02.S1 --- 5.51779864061817 --- --- --- --- 1.16257357597351 5.44965410232544 6.41484689712524 3.47352576255798 0.533936023712158 0.366210997104645 0.398925989866257 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25A8.02 /DEF=hypothetical protein --- --- --- --- --- --- SPAC25A8.02 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.96738558221824 4.68757781438653 -1.85981407149406 5.51779864061817 2.98779004988939 Max fold change at or above threshold 3 5.51779864061817 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773156_at SPAC4G8.13c.S1 --- 5.51695053360296 --- --- --- --- 2.04381585121155 1.97748339176178 11.2756309509277 1.0104444026947 0.904784977436066 0.780517995357513 0.194580003619194 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G8.13c /GEN=prz1 /DEF=transcription factor (PMID 12637524) --- --- --- --- --- --- SPAC4G8.13c // |prz1||transcription factor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.19881432910353 -1.03354387689227 -2.20157475380748 5.51695053360296 -2.02269006168078 Max fold change at or above threshold 1 5.51695053360296 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777741_at SPCC965.12.S1 --- 5.51530992584902 --- --- --- --- 4.49494075775146 1.36452662944794 3.35974311828613 0.814993321895599 0.601073980331421 0.725830018520355 0.533936023712158 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC965.12 /DEF=dipeptidase (predicted) --- --- --- --- --- --- SPCC965.12 // |||dipeptidase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.12539401907841 -3.29413927199797 -1.09419815457875 -1.33788227239362 -5.51530992584902 Max fold change at or above threshold 2 5.51530992584902 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778791_at YHR144C.S1 Deaminase required for dCTP and dTTP synthesis; expression is cell cycle regulated 5.50889697160827 54.9894409179688 290.571914672852 DCD1 6220 // pyrimidine nucleotide metabolism // inferred from genetic interaction /// 6220 // pyrimidine nucleotide metabolism // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4132 // dCMP deaminase activity // inferred from genetic interaction /// 4132 // dCMP deaminase activity // inferred from mutant phenotype /// 4132 // dCMP deaminase activity // inferred from sequence similarity 269.211761474609 61.1103401184082 48.8685417175293 311.932067871094 0.000244141003349796 0.000244141003349796 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR144C /GEN=DCD1 /DB_XREF=GI:6321938 /SEG=NC_001140:-387789,388727 /DEF=dCMP deaminase /NOTE=Dcd1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: dCMP deaminase activity [goid GO:0004132] [evidence IGI,IMP,ISS] [pmid 3023902]; go_process: pyrimidine nucleotide metabolism [goid GO:0006220] [evidence IGI,IMP] [pmid 6373725] --- --- --- --- --- --- S0001187 // DCD1 SGDID:S0001187, Chr VIII from 388728-387790, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000016673 // cdna:Genscan chromosome:SGD1:VIII:387790:388728:-1 // ensembl // 10 // --- /// YHR144C // cdna:known chromosome:SGD1:VIII:387790:388728:-1 gene:YHR144C // ensembl // 10 // --- --- No cerevisiae_gene 1.23897167056376 -4.4053389484166 -1.55010739923063 -5.50889697160827 1.15868662707188 Max fold change at or above threshold 4 5.50889697160827 Max fold change at or above threshold 0.70275698115198 -0.813815487661476 -0.903029555987129 1.01408806249662 172.78067779541 137.218250782976 0.794175902848673 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779957_at SPBC17G9.07.S1 --- 5.50769920317153 --- --- --- --- 4.99231624603271 0.906424999237061 3.1986563205719 8.12924003601074 0.149657994508743 0.753906011581421 0.219482004642487 0.0239257998764515 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17G9.07 /GEN=rps2402 /DEF=40S ribosomal protein S24 --- --- --- --- --- --- AB015168 // Schizosaccharomyces pombe mRNA for ribosomal protein S24 homolog, partial cds. // gb // 11 // --- /// SPBC17G9.07 // |rps2402|rps24-2|40S ribosomal protein S24|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.64146142094967 -5.50769920317153 1.26057891546667 -1.56075418728953 1.62835037593439 Max fold change at or above threshold 3 5.50769920317153 Max fold change at or above threshold AAAPAP No 4 0 AAAP 3 1 0 No No x = 1
1778048_at SPBC713.06.S1 --- 5.50203614421887 --- --- --- --- 1.22564697265625 0.326416164636612 0.222762435674667 1.58507943153381 0.366210997104645 0.904784977436066 0.725830018520355 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC713.06 /GEN=adl1 /DEF=DNA ligase (predicted) --- --- --- --- --- --- SPBC713.06 // |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.51974058980763 -3.75485991639146 1.21557769159902 -5.50203614421887 1.29325936986455 Max fold change at or above threshold 0 5.50203614421887 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770263_at YKL116C.S1 Protein kinase with a possible role in MAP kinase signaling in the pheromone response pathway 5.49898371219126 83.423095703125 417.827987670898 PRR1 165 // MAPKKK cascade // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4702 // receptor signaling protein serine/threonine kinase activity // inferred from mutant phenotype /// 4702 // receptor signaling protein serine/threonine kinase activity // inferred from sequence similarity 380.925323486328 69.2719497680664 97.5742416381836 454.730651855469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL116C /GEN=PRR1 /DB_XREF=GI:6322733 /SEG=NC_001143:-220990,222546 /DEF=Protein kinase with a possible role in MAP kinase signaling in the pheromone response pathway /NOTE=Prr1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: receptor signaling protein serine/threonine kinase activity [goid GO:0004702] [evidence IMP,ISS] [pmid 11337509]; go_process: MAPKKK cascade [goid GO:0000165] [evidence IMP] [pmid 11337509] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 3.0E-42 /// hanks // 2.1.17 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH // 8.0E-53 --- --- S0001599 // PRR1 SGDID:S0001599, Chr XI from 222546-220990, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018329 // cdna:Genscan chromosome:SGD1:XI:220990:222546:-1 // ensembl // 11 // --- /// GENEFINDER00000023057 // cdna:GeneFinder chromosome:SGD1:XI:220990:222417:-1 // ensembl // 11 // --- /// YKL116C // cdna:known chromosome:SGD1:XI:220990:222546:-1 gene:YKL116C // ensembl // 11 // --- --- No cerevisiae_gene 1.3231971611326 -5.49898371219126 -1.16094658431077 -3.9039537186345 1.19375274842233 Max fold change at or above threshold 4 5.49898371219126 Max fold change at or above threshold 0.665653779142471 -0.92646896376108 -0.78188293850777 1.04269812312638 250.625541687012 195.747077357805 0.781034032047138 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771297_at SPAC11H11.04.S1 --- 5.49584674129434 --- --- --- --- 1.75653052330017 1.6162371635437 2.98106980323792 0.31961053609848 0.696289002895355 0.780517995357513 0.533936023712158 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11H11.04 /GEN=mam2 /DEF=pheromone p-factor receptor (PMID 1657593) --- --- --- --- --- --- SPAC11H11.04 // |mam2||pheromone p-factor receptor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.21186186811861 -1.08680245877336 -1.16702971557205 1.69713521267884 -5.49584674129434 Max fold change at or above threshold 1 5.49584674129434 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774934_at SPBP16F5.05c.S1 --- 5.4936208614027 --- --- --- --- 0.585194826126099 0.372639745473862 0.936816096305847 0.12291357666254 0.828612983226776 0.601073980331421 0.850341975688934 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP16F5.05c /DEF=ankyrin repeat protein --- --- --- --- --- --- SPBP16F5.05c // |||ankyrin repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.02302220403134 -1.57040367602748 5.4936208614027 1.60086189159844 -4.76102674753947 Max fold change at or above threshold 0 5.4936208614027 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773890_at YNL077W.S1 Putative chaperone of the HSP40 (DNAJ) family; overexpression interferes with propagation of the [Psi+] prion 5.49163045628675 4883.67724609375 966.412658691406 APJ1 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 51082 // unfolded protein binding // inferred from mutant phenotype /// 51082 // unfolded protein binding // inferred from sequence similarity 933.553344726563 5126.72998046875 4640.62451171875 999.27197265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL077W /GEN=APJ1 /DB_XREF=GI:6324252 /SEG=NC_001146:+481390,482976 /DEF=Putative chaperone of the HSP40 (DNAJ) family; overexpression interferes with propagation of the [Psi+] prion /NOTE=Apj1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: chaperone activity [goid GO:0003754] [evidence IMP,ISS] [pmid 11923285]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 2.00000003908296E-24 --- S0005021 // APJ1 SGDID:S0005021, Chr XIV from 481390-482976, Verified ORF // sgd // 11 // --- /// GENSCAN00000019970 // cdna:Genscan chromosome:SGD1:XIV:481390:482976:1 // ensembl // 11 // --- /// GENEFINDER00000020650 // cdna:GeneFinder chromosome:SGD1:XIV:481390:482976:1 // ensembl // 11 // --- /// YNL077W // cdna:known chromosome:SGD1:XIV:481390:482976:1 gene:YNL077W // ensembl // 11 // --- --- No cerevisiae_gene 2.91033568529182 5.49163045628675 1.38339211595063 4.97092591219625 1.07039622138458 Max fold change at or above threshold 4 5.49163045628675 Max fold change at or above threshold -0.877122691551076 0.969699239675502 0.755601356718617 -0.848177904843043 2925.04495239258 2270.48237019649 0.776221359722805 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777016_at YBL081W.S1 Hypothetical protein 5.4913766784667 64.4559497833252 323.142135620117 --- --- --- --- 315.833740234375 57.5144920349121 71.3974075317383 330.450531005859 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL081W /GEN=RHK1 /DB_XREF=GI:6319390 /SEG=NC_001134:+71863,72969 /DEF=Hypothetical ORF /NOTE=Ybl081wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000177 // YBL081W SGDID:S0000177, Chr II from 71863-72969, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022240 // cdna:GeneFinder chromosome:SGD1:II:71863:72969:1 // ensembl // 11 // --- /// YBL081W // cdna:known chromosome:SGD1:II:71863:72969:1 gene:YBL081W // ensembl // 11 // --- GENSCAN00000021076 // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene -1.18055287012337 -5.4913766784667 -1.35900050056912 -4.42360235690599 1.04628001669688 Max fold change at or above threshold 4 5.4913766784667 Max fold change at or above threshold 0.815853849881852 -0.911120178023 -0.818306984032501 0.913573312173649 193.799042701721 149.579115855525 0.77182587576423 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775516_at SPBC17A3.06.S1 --- 5.49022948981698 --- --- --- --- 5.53400611877441 1.00797355175018 4.97176694869995 3.43511724472046 0.194580003619194 0.334473013877869 0.194580003619194 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17A3.06 /DEF=protein tyrosine phosphatase (ISS) --- --- --- --- --- --- SPBC17A3.06 // |||protein tyrosine phosphatase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.28457332685833 -5.49022948981698 -1.53896651838564 -1.11308638877803 -1.61100938469562 Max fold change at or above threshold 3 5.49022948981698 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777777_at SPBC3D6.06c.S1 --- 5.49014395402282 --- --- --- --- 0.876778662204742 2.82891869544983 2.21626543998718 0.955470860004425 0.985840022563934 0.932372987270355 0.904784977436066 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3D6.06c /DEF=ribose-phosphate pyrophosphokinase (predicted) --- --- --- --- --- --- SPBC3D6.06c // |||ribose-phosphate pyrophosphokinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.49014395402282 3.22649126557921 2.71800232564384 2.5277365149537 1.08975149737541 Max fold change at or above threshold 1 5.49014395402282 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778201_at YDL129W.S1 Hypothetical protein 5.48912663139819 125.741352081299 72.560718536377 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 66.0218811035156 98.2927169799805 153.189987182617 79.0995559692383 0.0239257998764515 0.030273400247097 0.0239257998764515 0.030273400247097 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL129W /GEN=RPP1B /DB_XREF=GI:6320074 /SEG=NC_001136:+231024,231899 /DEF=Hypothetical ORF /NOTE=Ydl129wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002287 // YDL129W SGDID:S0002287, Chr IV from 231024-231899, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023566 // cdna:GeneFinder chromosome:SGD1:IV:231024:231899:1 // ensembl // 11 // --- /// GENSCAN00000025003 // cdna:Genscan chromosome:SGD1:IV:231024:231899:1 // ensembl // 11 // --- /// YDL129W // cdna:known chromosome:SGD1:IV:231024:231899:1 gene:YDL129W // ensembl // 11 // --- --- No cerevisiae_gene 5.48912663139819 1.4887900092678 1.26553165033824 2.3202911613868 1.1980809187369 Max fold change at or above threshold 4 5.48912663139819 Max fold change at or above threshold -0.863043993905915 -0.0223599574558639 1.40776285934108 -0.5223589079793 99.1510353088379 38.3864025927441 0.387150799516892 PPPPPP Called_P_>2EXP 4 0 PPPP 0 4 0 Yes Yes 3 < x
1772872_at SPCC16C4.01.S1 --- 5.48867390078697 --- --- --- --- 1.56525218486786 3.07296657562256 0.592567086219788 0.285178571939468 0.888427972793579 0.665526986122131 0.904784977436066 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16C4.01 /GEN=sif2 /DEF=DUF155 --- --- --- --- --- --- SPCC16C4.01 // |sif2|SPCC5E4.09|sad1-interacting factor 2|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.36950664990303 1.96324055978365 -1.83826286416374 -2.64147675641791 -5.48867390078697 Max fold change at or above threshold 1 5.48867390078697 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777534_at SPBC1289.03c.S1 --- 5.48449542866256 --- --- --- --- 2.32165837287903 5.69475507736206 6.70489168167114 1.09542298316956 0.366210997104645 0.366210997104645 0.432372987270355 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1289.03c /GEN=spi1 /DEF=GTPase --- --- --- --- --- --- SPBC1289.03c // |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.26265136852582 2.45288244984129 5.48449542866256 2.88797514741869 -2.11941725575395 Max fold change at or above threshold 2 5.48449542866256 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772466_at SPAC3C7.02c.S1 --- 5.48420281137768 --- --- --- --- 8.75503444671631 4.11938905715942 5.72250413894653 9.31830501556396 0.5 0.665526986122131 0.601073980331421 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3C7.02c /DEF=hypothetical protein --- --- --- --- --- --- SPAC3C7.02c // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.48420281137768 -2.12532351890876 2.40866880551754 -1.52993064472087 1.06433676215391 Max fold change at or above threshold 4 5.48420281137768 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771164_at SPAC458.03.S1 --- 5.48234272326744 --- --- --- --- 0.880214214324951 2.49041771888733 0.726628720760345 0.784083485603333 0.870360970497131 0.601073980331421 0.753906011581421 0.84521484375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC458.03 /DEF=leucine-rich repeat protein --- --- --- --- --- --- SPAC458.03 // |||leucine-rich repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.03048042818733 2.82933140405744 -5.48234272326744 -1.21136722121841 -1.12260266985173 Max fold change at or above threshold 0 5.48234272326744 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777147_at SPAC1296.01c.S1 --- 5.48210173551523 --- --- --- --- 3.73642802238464 20.4834785461426 9.48623943328857 2.43813347816467 0.780517995357513 0.129638999700546 0.466064006090164 0.688720703125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1296.01c /DEF=phosphoacetylglucosamine mutase (predicted) --- --- --- --- --- --- SPAC1296.01c // ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 2.55059181461633 5.48210173551523 -2.30996653273422 2.53885244850356 -1.53249526978206 Max fold change at or above threshold 3 5.48210173551523 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774938_at YGL006W-A.S1 Identified by SAGE 5.4811108817933 15.1421599388123 10.2602829933167 --- --- --- --- 9.80798530578613 18.261775970459 12.0225439071655 10.7125806808472 0.219482004642487 0.194580003619194 0.334473013877869 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL006W-A /GEN=PMA1 /DB_XREF=GI:33438794 /SEG=NC_001139:+485426,485536 /DEF=Identified by SAGE /NOTE=Ygl006w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028769 // YGL006W-A SGDID:S0028769, Chr VII from 485428-485538, Uncharacterized ORF // sgd // 11 // --- /// YGL006W-A // cdna:known chromosome:SGD1:VII:485428:485538:1 gene:YGL006W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.89392673468001 1.86192937704399 -5.4811108817933 1.22579138654224 1.09223049860478 Max fold change at or above threshold 4 5.4811108817933 Max fold change at or above threshold -0.758009399026697 1.45682977283328 -0.177809186687475 -0.521011187119107 12.7012214660645 3.81688691986314 0.300513374249967 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776323_at SPAC2G11.14.S1 --- 5.47858994472909 --- --- --- --- 1.66054749488831 3.39973735809326 0.763514637947083 0.582086145877838 0.780517995357513 0.696289002895355 0.850341975688934 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2G11.14 /GEN=taf111 /DEF=transcription initiation factor activity --- --- --- --- --- --- SPAC2G11.14 // |taf111|taf1, taf130|transcription initiation factor activity|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.47858994472909 2.04735930080816 1.22020229894695 -2.17487316203019 -2.85275213410903 Max fold change at or above threshold 1 5.47858994472909 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770846_at SPAC1687.05.S1 --- 5.4762676190906 --- --- --- --- 11.2535161972046 9.58223819732666 3.94401884078979 2.11686372756958 0.274170011281967 0.24609400331974 0.398925989866257 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.05 /GEN=pli1 /DEF=septin interacting protein homolog --- --- --- --- --- --- SPAC1687.05 // |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.4762676190906 -1.17441415726278 -2.24092424282995 -2.85331197732084 -5.31612689595518 Max fold change at or above threshold 3 5.4762676190906 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779320_at SPAC29E6.07.S1 --- 5.47273699841829 --- --- --- --- 0.828137874603271 1.1880851984024 1.16506588459015 0.206208139657974 0.805419981479645 0.805419981479645 0.870360970497131 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29E6.07 /DEF=dubious --- --- --- --- --- --- SPAC29E6.07 // ||SPAC30.11|dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.56338265417433 1.4346466148183 5.47273699841829 1.40685013971651 -4.01602902764584 Max fold change at or above threshold 0 5.47273699841829 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774836_at SPAC12B10.14c.S1 --- 5.47207838795254 --- --- --- --- 0.886201798915863 0.609728455543518 0.677301466464996 0.249988168478012 0.888427972793579 0.943848013877869 0.601073980331421 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12B10.14c /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPAC12B10.14c // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.84810612614655 -1.45343683874143 5.47207838795254 -1.30843035604392 -3.54497496546045 Max fold change at or above threshold 0 5.47207838795254 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769700_at SPBP4H10.12.S1 --- 5.46806309902812 --- --- --- --- 8.92992401123047 9.29629039764404 13.586742401123 5.91593027114868 0.303710997104645 0.334473013877869 0.111571997404099 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP4H10.12 /DEF=conserved protein --- --- --- --- --- --- SPBP4H10.12 // |||conserved protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.08230731078702 1.04102682015578 -5.46806309902812 1.52148466034381 -1.50947080204456 Max fold change at or above threshold 4 5.46806309902812 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779898_at SPAC607.02c.S1 --- 5.46800862799269 --- --- --- --- 1.69547379016876 2.79869866371155 1.29494607448578 0.310071527957916 0.601073980331421 0.633789002895355 0.904784977436066 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC607.02c /DEF=lysine-rich protein --- --- --- --- --- --- SPAC607.02c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.27220291465932 1.65068825005722 -4.72252165951255 -1.30930069102841 -5.46800862799269 Max fold change at or above threshold 1 5.46800862799269 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771553_at SPCC1682.11c.S1 --- 5.46679305044243 --- --- --- --- 0.625488936901093 0.367631167173386 0.620662569999695 0.432309180498123 0.828612983226776 0.753906011581421 0.753906011581421 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1682.11c /DEF=conserved fungal protein --- --- --- --- --- --- SPCC1682.11c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.64459339972537 -1.70140345202586 5.46679305044243 -1.00777615267085 -1.44685554949442 Max fold change at or above threshold 0 5.46679305044243 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-TagE_at AFFX-r2-TagE --- 5.46658290207801 --- --- --- --- 1.4283618927002 0.261289715766907 0.502851843833923 0.369575023651123 0.780517995357513 0.919434010982513 0.84521484375 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Clone 76C1, synthetic insert (578 bp)+ poly A tail (21 bp), target sequence 1-578 --- --- --- --- --- --- AFFX-r2-TagE // --- // unknown // --- // --- /// AFFX-r2-TagE // --- // unknown // --- // --- /// AFFX-r2-TagE // --- // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-TagE // --- // unknown // --- // --- /// AFFX-r2-TagE // --- // affx // --- // --- /// AFFX-r2-TagE // --- // affx // --- // --- /// AFFX-r2-TagE // --- // affx // --- // --- /// AFFX-r2-TagE // --- // affx // --- // --- /// AFFX-r2-TagE // --- // affx // --- // --- /// AFFX-r2-TagE // --- // affx // --- // --- /// AFFX-r2-TagE // --- // affx // --- // --- /// AFFX-r2-TagE // --- // affx // --- // --- /// AFFX-r2-TagE // --- // affx // --- // --- /// AFFX-r2-TagE // --- // affx // --- // --- /// AFFX-r2-TagE // --- // affx // --- // --- /// AFFX-r2-TagE // --- // affx // --- // --- --- AFFX_control No 2.94825524488131 -5.46658290207801 3.3463060492233 -2.84052233319828 -3.86487668617066 Max fold change at or above threshold 0 5.46658290207801 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769947_at SPBC336.04.S1 --- 5.46548037939441 --- --- --- --- 4.18943500518799 0.766526401042938 6.77710866928101 2.00641059875488 0.601073980331421 0.828612983226776 0.334473013877869 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC336.04 /GEN=cdc6 /DEF=DNA polymerase delta (catalytic subunit) (PMID 1960723) --- --- --- --- --- --- SPBC336.04 // |cdc6|pol3, pold, mis10|DNA polymerase delta |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.42841314282568 -5.46548037939441 -4.78772416703802 1.61766650178093 -2.08802475813666 Max fold change at or above threshold 2 5.46548037939441 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773676_at SPBC530.01.S1 --- 5.46302513718568 --- --- --- --- 0.776057958602905 1.73708558082581 2.63594532012939 0.241284087300301 0.4326171875 0.567627012729645 0.533936023712158 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC530.01 /GEN=gyp1 /DEF=TBC domain protein --- --- --- --- --- --- SPBC530.01 // |gyp1||GTPase activating protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.59309137226641 2.23834516683907 -5.46302513718568 3.39658306561889 -3.21636609892566 Max fold change at or above threshold 1 5.46302513718568 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777558_at SPBC725.16.S1 --- 5.46282498016614 --- --- --- --- 4.23349809646606 1.1328809261322 2.63483595848084 1.84650599956512 0.303710997104645 0.753906011581421 0.0676269978284836 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC725.16 /GEN=res1 /DEF=transcription factor --- --- --- --- --- --- X68789 // S.pombe mRNA for cell division cycle regulation protein, Res1. // gb // 10 // --- /// L09270 // Schizosaccharomyces pombe cell division cycle related-protein (sct1) mRNA, complete cds. // gb // 10 // --- /// SPBC725.16 // |res1|sct1|MBF transcription factor complex Res1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.36388842717352 -3.73693121563955 -5.46282498016614 -1.60674067121316 -2.29270746884283 Max fold change at or above threshold 2 5.46282498016614 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773299_at SPBC1718.03.S1 --- 5.46169866900244 --- --- --- --- 3.71028757095337 4.78611612319946 5.08895492553711 1.90401721000671 0.334473013877869 0.390625 0.334473013877869 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1718.03 /GEN=ker1 /DEF=localization nucleolus --- --- --- --- --- --- AB079137 // Schizosaccharomyces pombe ker1 mRNA for neucleolar protein KER1, complete cds. // gb // 11 // --- /// SPBC1718.03 // |ker1||RNA polymerase I subunit A14 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.46838859653283 1.28995826648813 -5.46169866900244 1.37157964934494 -1.94866283322107 Max fold change at or above threshold 3 5.46169866900244 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776897_s_at SPCC1739.15.S1 --- 5.45918852429136 --- --- --- --- 0.647477865219116 2.02245378494263 1.12920105457306 3.53470373153687 0.780517995357513 0.466064006090164 0.398925989866257 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1739.15 /GEN=wtf21 /DEF=wtf element --- --- --- --- --- --- D89232 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1417. // gb // 10 // --- /// SPCC1620.02 // |wtf23||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPCC1739.15 // |wtf21|SPCC1739.15|wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPCC1906.03 // |wtf19||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.92511126145685 3.1235875287539 1.20787064125559 1.74399947122659 5.45918852429136 Max fold change at or above threshold 1 5.45918852429136 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771663_at SPBC16G5.17.S1 --- 5.45789729388847 --- --- --- --- 0.476688653230667 2.44098401069641 0.866060197353363 1.07970237731934 0.888427972793579 0.466064006090164 0.805419981479645 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16G5.17 /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPBC16G5.17 // |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.23709994999012 5.12070928089667 5.45789729388847 1.81682570265477 2.26500540762164 Max fold change at or above threshold 0 5.45789729388847 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772906_at SPAC5D6.04.S1 --- 5.45565390101008 --- --- --- --- 3.24179673194885 17.6861209869385 14.5980415344238 9.57887840270996 0.725830018520355 0.466064006090164 0.5 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5D6.04 /DEF=auxin family --- --- --- --- --- --- SPAC5D6.04 // |||auxin family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.2302751528374 5.45565390101008 2.0024374349171 4.50307121065176 2.95480537330034 Max fold change at or above threshold 4 5.45565390101008 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775082_at SPAC22G7.11c.S1 --- 5.4515087276166 --- --- --- --- 0.967699468135834 2.20170974731445 1.57614421844482 4.56941270828247 0.888427972793579 0.805419981479645 0.850341975688934 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22G7.11c /DEF=conserved fungal protein --- --- --- --- --- --- SPAC22G7.11c // ||SPAC4G8.01c|conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.4515087276166 2.27519991465512 -1.7934105790802 1.6287538335441 4.72193367749281 Max fold change at or above threshold 1 5.4515087276166 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776802_at SPBC18H10.16.S1 --- 5.44939877639994 --- --- --- --- 1.3128821849823 1.08962666988373 3.28796291351318 0.370309442281723 0.696289002895355 0.805419981479645 0.725830018520355 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18H10.16 /DEF=CCC Na-K-Cl transporter --- --- --- --- --- --- SPBC18H10.16 // |||CCC Na-K-Cl transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.95297760422057 -1.20489174987099 -5.44939877639994 2.50438535241265 -3.54536513271916 Max fold change at or above threshold 1 5.44939877639994 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778313_at SPAPYUG7.05.S1 --- 5.44823778280595 --- --- --- --- 0.594050109386444 1.16262149810791 0.580947816371918 0.509071707725525 0.919434010982513 0.981445014476776 0.991943001747131 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPYUG7.05 /DEF=delta 1-pyrroline-5-carboxylate reductase (predicted) --- --- --- --- --- --- SPAPYUG7.05 // |||delta 1-pyrroline-5-carboxylate reductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.44823778280595 1.95711014902212 1.72723141618222 -1.02255330452286 -1.16692815642926 Max fold change at or above threshold 0 5.44823778280595 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773440_at SPBC30D10.10c.S1 --- 5.44186513263321 --- --- --- --- 0.870742440223694 0.514967560768127 4.73846292495728 3.12883496284485 0.665526986122131 0.850341975688934 0.466064006090164 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30D10.10c /GEN=tor1 /DEF=phosphatidylinositol kinase --- --- --- --- --- --- SPBC30D10.10c // |tor1||phosphatidylinositol kinase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.51079601282365 -1.6908685256308 3.02716243010811 5.44186513263321 3.59329558122957 Max fold change at or above threshold 2 5.44186513263321 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770083_at SPAC23E2.01.S1 --- 5.44069006951409 --- --- --- --- 11.3567276000977 6.56293821334839 3.86079621315002 2.56175017356873 0.0361328125 0.432372987270355 0.398925989866257 0.274170011281967 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23E2.01 /GEN=fep1 /DEF=iron-sensing transcriptional regulator --- --- --- --- --- --- SPAC23E2.01 // |fep1|gaf2|iron-sensing transcriptional regulator|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.21264154140532 -1.73043341730677 -5.44069006951409 -2.94155064735512 -4.43319091661339 Max fold change at or above threshold 4 5.44069006951409 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1771174_at SPAC328.05.S1 --- 5.43897806648748 --- --- --- --- 0.591755151748657 1.70580494403839 1.63780319690704 3.21854329109192 0.932372987270355 0.904784977436066 0.904784977436066 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC328.05 /DEF=RNA-binding protein --- --- --- --- --- --- SPAC328.05 // |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.31609106264766 2.88261950740552 1.16980371885426 2.76770416289115 5.43897806648748 Max fold change at or above threshold 1 5.43897806648748 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770833_at SPBC1734.14c.S1 --- 5.43792173957934 --- --- --- --- 0.749325215816498 1.52673959732056 0.69583648443222 0.355458945035934 0.780517995357513 0.665526986122131 0.696289002895355 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1734.14c /GEN=suc1 /DEF=cyclin-dependent protein kinase (regulatory subunit) --- --- --- --- --- --- SPBC1734.14c // |suc1||cyclin-dependent protein kinase regulatory subunit Suc1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.25279887008733 2.0374859474827 5.43792173957934 -1.07686968502079 -2.10804996267782 Max fold change at or above threshold 0 5.43792173957934 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770989_at SPCC553.07c.S1 --- 5.4378295080366 --- --- --- --- 0.793303549289703 0.765076458454132 1.85039281845093 4.13769817352295 0.828612983226776 0.943848013877869 0.466064006090164 0.14453125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC553.07c /DEF=translesion DNA repair polymerase (predicted) --- --- --- --- --- --- SPCC553.07c // |||DinB translesion DNA repair polymerase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 5.4378295080366 -1.03689447051162 -4.01170014214872 2.33251549184131 5.21578174864804 Max fold change at or above threshold 1 5.4378295080366 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769616_at SPCC63.06.S1 --- 5.43772896584329 --- --- --- --- 1.0794540643692 0.295828014612198 5.86977863311768 0.402253180742264 0.466064006090164 0.5 0.149657994508743 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC63.06 /DEF=WD repeat protein --- --- --- --- --- --- SPCC63.06 // |||WD repeat protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 5.22316299170955 -3.64892441232877 2.69286857364736 5.43772896584329 -2.6835190274377 Max fold change at or above threshold 1 5.43772896584329 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778796_at SPBC21C3.03.S1 --- 5.43501897761685 --- --- --- --- 5.47237586975098 5.73432159423828 6.96876525878906 2.66888046264648 0.125732421875 0.149657994508743 0.129638999700546 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21C3.03 /DEF=conserved fungal protein --- --- --- --- --- --- SPBC21C3.03 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.43501897761685 1.04786691022728 -1.45065439577935 1.27344419035789 -2.05043873127406 Max fold change at or above threshold 4 5.43501897761685 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780087_at SPAC26F1.02.S1 --- 5.43487152049917 --- --- --- --- 7.53207063674927 1.75135481357574 4.0428352355957 1.38587832450867 0.001953125 0.805419981479645 0.366210997104645 0.567627012729645 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26F1.02 /DEF=pinin family conserved region --- --- --- --- --- --- SPAC26F1.02 // |||pinin family conserved region|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.51451586816949 -4.30071084303644 -2.16540848430014 -1.86306643675016 -5.43487152049917 Max fold change at or above threshold 2 5.43487152049917 Max fold change at or above threshold PAAAAA No 3 0 PAAA 3 1 0 No No x = 1
1775671_at SPAC1296.02.S1 --- 5.43332959481635 --- --- --- --- 2.9973578453064 8.95645236968994 16.2856330871582 2.22318482398987 0.696289002895355 0.42333984375 0.0676269978284836 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1296.02 /GEN=cox4 /DEF=cytochrome c oxidase subunit IV --- --- --- --- --- --- AB000399 // Fission yeast mRNA for cytochrome c oxidase subunit IV, complete cds. // gb // 11 // --- /// SPAC1296.02 // |cox4||cytochrome c oxidase subunit IV|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.61026517221439 2.98811581130193 2.31452493391972 5.43332959481635 -1.34822701781814 Max fold change at or above threshold 3 5.43332959481635 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771697_at SPBC21H7.03c.S1 --- 5.43185997173557 --- --- --- --- 1.04884362220764 4.54509782791138 1.78165423870087 5.69717168807983 0.665526986122131 0.59228515625 0.633789002895355 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21H7.03c /DEF=acid phosphatase activity (predicted) --- --- --- --- --- --- SPBC21H7.03c // |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.98510741460489 4.33343706504569 1.25331409182052 1.69868434242922 5.43185997173557 Max fold change at or above threshold 2 5.43185997173557 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776782_at SPAC23C4.18c.S1 --- 5.43112508720779 --- --- --- --- 2.07782387733459 5.17120409011841 1.59194839000702 2.80062770843506 0.466064006090164 0.219482004642487 0.567627012729645 0.245849609375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C4.18c /GEN=rad4 /DEF=DNA polymerase epsilon (predicted) --- --- --- --- --- --- SPAC23C4.18c // |rad4|cut5, dre3|BRCT domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.43112508720779 2.48875958474015 -2.82327156303916 -1.30520806476988 1.34786578351755 Max fold change at or above threshold 2 5.43112508720779 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774154_at YNL304W.S1 Rab-type small GTPase that interacts with the C-terminal tail domain of Myo2p to mediate distribution of mitochondria to daughter cells 5.42900166206629 49.8296699523926 237.533729553223 YPT11 1 // mitochondrion inheritance // inferred from genetic interaction 131 // incipient bud site // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 3924 // GTPase activity // inferred from physical interaction 234.604263305664 43.2131500244141 56.4461898803711 240.463195800781 0.000732421991415322 0.0107421996071935 0.00292969006113708 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL304W /GEN=YPT11 /DB_XREF=GI:6324025 /SEG=NC_001146:+60482,61549 /DEF=acts positively on mitochondrial distribution toward the bud. /NOTE=Ypt11p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 12391144]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 12391144]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 12391144]; go_function: GTPase activity [goid GO:0003924] [evidence IPI] [pmid 12391144]; go_process: mitochondrion inheritance [goid GO:0000001] [evidence IGI] [pmid 12391144] --- --- --- --- --- --- S0005248 // YPT11 SGDID:S0005248, Chr XIV from 60482-61549, Verified ORF // sgd // 11 // --- /// GENSCAN00000019798 // cdna:Genscan chromosome:SGD1:XIV:60482:61549:1 // ensembl // 11 // --- /// GENEFINDER00000020504 // cdna:GeneFinder chromosome:SGD1:XIV:60482:61549:1 // ensembl // 11 // --- /// YNL304W // cdna:known chromosome:SGD1:XIV:60482:61549:1 gene:YNL304W // ensembl // 11 // --- --- No cerevisiae_gene -1.11983700443833 -5.42900166206629 -1.28128005794793 -4.15624621968057 1.02497368296962 Max fold change at or above threshold 4 5.42900166206629 Max fold change at or above threshold 0.837749502352368 -0.925705064267093 -0.803777435736333 0.891732997651058 143.681699752808 108.531921890194 0.755363571539831 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1774201_at SPBC3H7.09.S1 --- 5.4262407332005 --- --- --- --- 1.23696625232697 6.71207666397095 0.870523273944855 0.804590582847595 0.850341975688934 0.432372987270355 0.850341975688934 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3H7.09 /DEF=zinc finger protein --- --- --- --- --- --- SPBC3H7.09 // |||palmitoyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.11256042785932 5.4262407332005 4.19665771207328 -1.42094564194883 -1.53738594348086 Max fold change at or above threshold 1 5.4262407332005 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777805_at SPAC3G9.10c.S1 --- 5.42457787863532 --- --- --- --- 0.554915726184845 2.80501770973206 0.637651979923248 2.0369234085083 0.976073980331421 0.780517995357513 0.904784977436066 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G9.10c /DEF=exosome (RNase complex) (predicted) --- --- --- --- --- --- D89141 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0554. // gb // 11 // --- /// SPAC3G9.10c // |||exosome |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.06985113763052 5.05485351625751 5.42457787863532 1.14909697064675 3.67068964239408 Max fold change at or above threshold 1 5.42457787863532 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770268_at SPBC1685.10.S1 --- 5.42396621941458 --- --- --- --- 1.35211622714996 6.96749401092529 4.49450922012329 2.91945934295654 0.780517995357513 0.327392578125 0.533936023712158 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1685.10 /GEN=rps27 /DEF=40S ribosomal protein S27 --- --- --- --- --- --- AB015171 // Schizosaccharomyces pombe mRNA for ribosomal protein S27 homolog, partial cds. // gb // 9 // --- /// AF045155 // Schizosaccharomyces pombe ribosomal protein S27 (rps27) mRNA, complete cds. // gb // 10 // --- /// SPBC1685.10 // |rps27||40S ribosomal protein S27|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.42396621941458 5.15302891202749 -2.13095251403077 3.32405538065095 2.15917780168224 Max fold change at or above threshold 3 5.42396621941458 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774309_at SPAC4F10.19c.S1 --- 5.42229178670984 --- --- --- --- 0.950124561786652 4.71072244644165 5.15185260772705 2.49550437927246 0.850341975688934 0.5 0.0107421996071935 0.303710997104645 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F10.19c /DEF=zinc finger protein --- --- --- --- --- --- SPAC4F10.19c // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.00068089026559 4.95800512470009 3.37955157462668 5.42229178670984 2.62650233415692 Max fold change at or above threshold 2 5.42229178670984 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1772519_at SPAC1D4.02c.S1 --- 5.41946710172948 --- --- --- --- 1.18450438976288 4.14995765686035 6.41938257217407 5.11466598510742 0.665526986122131 0.24609400331974 0.0952147990465164 0.030273400247097 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1D4.02c /DEF=spindle checkpoint protein (predicted) --- --- --- --- --- --- SPAC1D4.02c // |||spindle checkpoint protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.09216147228412 3.50353927999466 -1.23682009295248 5.41946710172948 4.31797976378231 Max fold change at or above threshold 3 5.41946710172948 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1772391_at YIL057C.S1 Hypothetical protein 5.41752818251006 5383.96923828125 1248.23168945313 --- --- 5737 // cytoplasm // inferred from direct assay --- 1215.46166992188 6584.7978515625 4183.140625 1281.00170898438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL057C /GEN=SNP1 /DB_XREF=GI:6322132 /SEG=NC_001141:-247899,248393 /DEF=Hypothetical ORF /NOTE=Yil057cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001319 // YIL057C SGDID:S0001319, Chr IX from 248393-247899, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016434 // cdna:Genscan chromosome:SGD1:IX:247899:248393:-1 // ensembl // 11 // --- /// GENEFINDER00000019083 // cdna:GeneFinder chromosome:SGD1:IX:247899:248357:-1 // ensembl // 10 // --- /// YIL057C // cdna:known chromosome:SGD1:IX:247899:248393:-1 gene:YIL057C // ensembl // 11 // --- --- No cerevisiae_gene -1.11769751928148 5.41752818251006 3.16733831726668 3.44160636942905 1.05392192998296 Max fold change at or above threshold 4 5.41752818251006 Max fold change at or above threshold -0.813768185588788 1.26626336240693 0.335883399274225 -0.788378576092365 3316.10046386719 2581.37247332351 0.7784361485578 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778184_at YOL114C.S1 Hypothetical protein 5.41735593665875 120.500873565674 23.1949243545532 --- --- --- --- 24.0317573547363 130.188583374023 110.813163757324 22.3580913543701 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL114C /GEN=TRF4 /DB_XREF=GI:6324458 /SEG=NC_001147:-103316,103924 /DEF=Hypothetical ORF /NOTE=Yol114cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.3.ARID domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; ARID-like; ARID domain // 5.40000009536743 --- S0005474 // YOL114C SGDID:S0005474, Chr XV from 103924-103316, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YOL114C // cdna:known chromosome:SGD1:XV:103316:103924:-1 gene:YOL114C // ensembl // 11 // --- --- No cerevisiae_gene 2.73580335570395 5.41735593665875 1.04118611424746 4.61111362442599 -1.07485728427526 Max fold change at or above threshold 4 5.41735593665875 Max fold change at or above threshold -0.842755574338124 1.02824977820868 0.686759596464754 -0.872253800335309 71.8478989601135 56.7378526602219 0.789693971311813 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775630_at SPAC23C4.06c.S1 --- 5.41708511731522 --- --- --- --- 0.89814555644989 0.84802520275116 0.230461955070496 0.856659293174744 0.665526986122131 0.780517995357513 0.976073980331421 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C4.06c /DEF=methyltransferase (predicted) --- --- --- --- --- --- SPAC23C4.06c // |||methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -5.41708511731522 -1.0591024341448 1.0041513415309 -3.89715324672638 -1.04842796150778 Max fold change at or above threshold 0 5.41708511731522 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771583_at SPAC1006.01.S1 --- 5.41699845579599 --- --- --- --- 1.46478295326233 1.07234108448029 1.77448809146881 0.270404905080795 0.633789002895355 0.828612983226776 0.567627012729645 0.968017578125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1006.01 /GEN=psp3 /DEF=serine protease (predicted) --- --- --- --- --- --- SPAC1006.01 // |psp3||serine protease |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- D89229 // gb // 7 // Cross Hyb Matching Probes No No 1.10781925356603 -1.36596739084397 -2.83513091739604 1.21143414969209 -5.41699845579599 Max fold change at or above threshold 0 5.41699845579599 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771246_at YBR252W.S1 dUTPase, catalyzes the hydrolysis of dUTP to dUMP and PPi and thereby prevents the incorporation of uracil into DNA during replication 5.41696949568288 88.7796325683594 506.583511352539 DUT1 9213 // pyrimidine deoxyribonucleoside triphosphate catabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4170 // dUTP diphosphatase activity // inferred from mutant phenotype 470.618194580078 86.8785018920898 90.6807632446289 542.548828125 0.00122069998178631 0.0676269978284836 0.0239257998764515 0.000732421991415322 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR252W /GEN=DUT1 /DB_XREF=GI:6319729 /SEG=NC_001134:+722568,723011 /DEF=dUTPase, catalyzes the hydrolysis of dUTP to dUMP and PPi and thereby prevents the incorporation of uracil into DNA during replication /NOTE=Dut1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: dUTP diphosphatase activity [goid GO:0004170] [evidence IMP] [pmid 8223452]; go_process: pyrimidine deoxyribonucleoside triphosphate catabolism [goid GO:0009213] [evidence IMP] [pmid 8223452] --- --- --- --- --- --- S0000456 // DUT1 SGDID:S0000456, Chr II from 722606-723049, Verified ORF // sgd // 11 // --- /// GENSCAN00000021341 // cdna:Genscan chromosome:SGD1:II:722606:723049:1 // ensembl // 11 // --- /// GENEFINDER00000022228 // cdna:GeneFinder chromosome:SGD1:II:722606:723049:1 // ensembl // 11 // --- /// YBR252W // cdna:known chromosome:SGD1:II:722606:723049:1 gene:YBR252W // ensembl // 11 // --- --- No cerevisiae_gene 3.25354866610074 -5.41696949568288 -1.20152119902041 -5.18983495221025 1.15284286577382 Max fold change at or above threshold 4 5.41696949568288 Max fold change at or above threshold 0.711658645355259 -0.867484428740952 -0.851837585854549 1.00766336924024 297.681571960449 243.005018976899 0.816325368670067 PPAPPP Called_P_>2EXP 2 0 PAPP 1 3 0 Yes Yes 2 < x = 3
1776561_at SPCC11E10.05c.S1 --- 5.41481009913752 --- --- --- --- 2.80153703689575 0.756158113479614 2.47861862182617 2.95339369773865 0.5 0.805419981479645 0.601073980331421 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC11E10.05c /GEN=ynd1 /DEF=nucleotide diphosphatase activity (PMID 12686557) --- --- --- --- --- --- SPCC11E10.05c // |ynd1||nucleoside diphosphatase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.41481009913752 -3.70496194771212 1.93583131540467 -1.13028160614385 1.05420476647032 Max fold change at or above threshold 2 5.41481009913752 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777261_s_at SPAC750.07c.S1 --- 5.41459543193231 --- --- --- --- 1.12529921531677 0.276084095239639 2.21313524246216 0.207827016711235 0.533936023712158 0.870360970497131 0.601073980331421 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC750.07c /DEF=66294 domain --- --- --- --- --- --- SPAC750.07c // |||66294 domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPBCPT2R1.06c // |||pseudogene|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPAC212.08c // |||66294 domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.33942640751993 -4.07592916332257 1.36724410770095 1.96670824287313 -5.41459543193231 Max fold change at or above threshold 0 5.41459543193231 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776580_at YDR314C.S1 Hypothetical protein 5.41242608590962 160.483474731445 40.2415180206299 --- --- 5634 // nucleus // inferred from direct assay --- 36.4062538146973 123.920791625977 197.046157836914 44.0767822265625 0.00195312988944352 0.00195312988944352 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR314C /GEN=PIB1 /DB_XREF=GI:6320520 /SEG=NC_001136:-1090426,1092504 /DEF=Hypothetical ORF /NOTE=Ydr314cp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002722 // YDR314C SGDID:S0002722, Chr IV from 1092506-1090428, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025342 // cdna:Genscan chromosome:SGD1:IV:1090428:1092506:-1 // ensembl // 11 // --- /// YDR314C // cdna:known chromosome:SGD1:IV:1090428:1092506:-1 gene:YDR314C // ensembl // 11 // --- --- No cerevisiae_gene 1.65819697871293 3.40383254637283 3.32902954321294 5.41242608590962 1.21069260382865 Max fold change at or above threshold 4 5.41242608590962 Max fold change at or above threshold -0.845609129078858 0.311480298577221 1.27832066878654 -0.744191838284906 100.362496376038 75.6333397571161 0.75360161901248 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772835_at SPAC56E4.05.S1 --- 5.41231429198932 --- --- --- --- 1.61532211303711 2.26179957389832 8.74263095855713 0.685165762901306 0.725830018520355 0.65625 0.303710997104645 0.8447265625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC56E4.05 /DEF=hypothetical protein --- --- --- --- --- --- SPAC56E4.05 // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.30575637734453 1.40021581803626 -1.93544057852235 5.41231429198932 -2.35756396553893 Max fold change at or above threshold 1 5.41231429198932 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775037_at SPBC18H10.09.S1 --- 5.40863626945233 --- --- --- --- 5.15920066833496 5.62921571731567 7.50616025924683 2.25206613540649 0.5 0.696289002895355 0.533936023712158 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18H10.09 /DEF=hypothetical protein --- --- --- --- --- --- SPBC18H10.09 // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.40863626945233 1.09110230037484 -1.98339154934328 1.454907599411 -2.29087440516206 Max fold change at or above threshold 3 5.40863626945233 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778903_at YPL068C.S1 Hypothetical protein 5.40854438429995 410.549087524414 171.006805419922 --- --- 5634 // nucleus // inferred from direct assay --- 172.269409179688 340.066711425781 481.031463623047 169.744201660156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL068C /GEN=BTS1 /DB_XREF=GI:6325189 /SEG=NC_001148:-424210,425091 /DEF=Hypothetical ORF /NOTE=Ypl068cp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005989 // YPL068C SGDID:S0005989, Chr XVI from 425093-424212, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000017135 // cdna:Genscan chromosome:SGD1:XVI:424212:425093:-1 // ensembl // 10 // --- /// YPL068C // cdna:known chromosome:SGD1:XVI:424212:425093:-1 gene:YPL068C // ensembl // 10 // --- --- No cerevisiae_gene 5.40854438429995 1.97404004022021 -1.55979622901405 2.79232085321255 -1.01487654656144 Max fold change at or above threshold 4 5.40854438429995 Max fold change at or above threshold -0.7911169960362 0.329032663462897 1.27005863385401 -0.807974301280709 290.777946472168 149.799003037798 0.515166314554519 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770774_at SPCPB16A4.05c.S1 --- 5.404967914844 --- --- --- --- 9.27892017364502 1.71673917770386 9.71682357788086 4.15276718139648 0.0561522990465164 0.696289002895355 0.0676269978284836 0.0676269978284836 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCPB16A4.05c /DEF=urease accessory protein UREG (ISS) --- --- --- --- --- --- SPCPB16A4.05c // |||urease accessory protein UREG |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.60586569684653 -5.404967914844 -1.09099270982315 1.04719335828318 -2.23439450571961 Max fold change at or above threshold 3 5.404967914844 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1769445_at SPCC4G3.16.S1 --- 5.40454989189781 --- --- --- --- 1.61906707286835 6.10290193557739 1.59780859947205 3.41641211509705 0.466064006090164 0.171387001872063 0.601073980331421 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4G3.16 /DEF=drap deaminase (predicted) --- --- --- --- --- --- SPCC4G3.16 // |||DRAP deaminase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.04451581289044 3.76939413928384 -5.40454989189781 -1.01330476842053 2.11011154037276 Max fold change at or above threshold 2 5.40454989189781 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774074_s_at YCL069W.S1 Hypothetical protein /// Permease of basic amino acids in the vacuolar membrane 5.40396774127293 0.343856558203697 2.22082272171974 VBA3 15802 // basic amino acid transport // inferred from mutant phenotype 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay 5286 // basic amino acid permease activity // inferred from direct assay /// 5286 // basic amino acid permease activity // inferred from mutant phenotype 0.693577110767365 0.224009186029434 0.46370393037796 3.74806833267212 0.633789002895355 0.884033203125 0.665526986122131 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL069W /DB_XREF=GI:6319783 /SEG=NC_001135:+9706,11082 /DEF=Hypothetical ORF /NOTE=Ycl069wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000574 // span:4-26,38-60,64-86,127-149,164-186,206-228,248-270,275-297,307-326,346-368,419-438 // numtm:11 /// S0001813 // span:34-56,76-98,105-124,128-150,162-184,188-210,251-273,288-310,330-352,372-394,399-421,431-450,470-492,543-562 // numtm:14 S0000574 // YCL069W SGDID:S0000574, Chr III from 9706-11082, Uncharacterized ORF // sgd // 11 // --- /// S0001813 // YKR105C SGDID:S0001813, Chr XI from 660102-658354, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022415 // cdna:Genscan chromosome:SGD1:III:9712:11082:1 // ensembl // 11 // --- /// GENSCAN00000018506 // cdna:Genscan chromosome:SGD1:XI:658354:660102:-1 // ensembl // 11 // --- /// GENEFINDER00000022985 // cdna:GeneFinder chromosome:SGD1:XI:658354:660102:-1 // ensembl // 11 // --- /// YCL069W // cdna:known chromosome:SGD1:III:9706:11082:1 gene:YCL069W // ensembl // 11 // --- /// YKR105C // cdna:known chromosome:SGD1:XI:658354:660102:-1 gene:YKR105C // ensembl // 11 // --- --- No cerevisiae_gene -2.15184911323987 -3.0961994151268 1.00415630648008 -1.4957326546748 5.40396774127293 Max fold change at or above threshold 1 5.40396774127293 Max fold change at or above threshold -0.355756149400871 -0.639489689671364 -0.49465560962598 1.48990144869821 1.28233963996172 1.65496093373478 1.2905792522987 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778767_at SPCC613.10.S1 --- 5.4024103863816 --- --- --- --- 3.04838633537292 2.18783712387085 0.821969151496887 0.564264118671417 0.696289002895355 0.780517995357513 0.870360970497131 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC613.10 /GEN=qcr2 /DEF=core protein 2 --- --- --- --- --- --- D89109 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0263. // gb // 11 // --- /// SPCC613.10 // |qcr2||ubiquinol-cytochrome-c reductase complex core protein 2|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.9198228626307 -1.39333330717944 -2.78160323144669 -3.70863837142977 -5.4024103863816 Max fold change at or above threshold 1 5.4024103863816 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777905_at SPAC688.12c.S1 --- 5.40155916158271 --- --- --- --- 1.05702221393585 1.16215288639069 3.51760339736938 2.02613759040833 0.366210997104645 0.423828125 0.111571997404099 0.124755859375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC688.12c /DEF=sequence orphan --- --- --- --- --- --- SPAC688.12c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.40155916158271 1.0994592838909 3.88373853677901 3.32784245306585 1.9168353925732 Max fold change at or above threshold 1 5.40155916158271 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770659_at YPL017C.S1 Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family 5.39599437491979 244.76815032959 104.495895385742 --- --- 5737 // cytoplasm // inferred from direct assay 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from sequence similarity 101.121604919434 200.244430541992 289.291870117188 107.870185852051 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL017C /GEN=CTF19 /DB_XREF=GI:6325240 /SEG=NC_001148:-518730,520229 /DEF=Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family /NOTE=Ypl017cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: S-adenosylmethionine-dependent methyltransferase activity [goid GO:0008757] [evidence ISS] [pmid 12872006]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005938 // YPL017C SGDID:S0005938, Chr XVI from 520231-518732, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000017171 // cdna:Genscan chromosome:SGD1:XVI:518732:520201:-1 // ensembl // 10 // --- /// GENEFINDER00000020902 // cdna:GeneFinder chromosome:SGD1:XVI:518732:520231:-1 // ensembl // 10 // --- /// YPL017C // cdna:known chromosome:SGD1:XVI:518732:520231:-1 gene:YPL017C // ensembl // 10 // --- --- No cerevisiae_gene 5.39599437491979 1.98023390453042 -1.01190515635877 2.86083147461588 1.06673728070271 Max fold change at or above threshold 4 5.39599437491979 Max fold change at or above threshold -0.827689169292563 0.288382422987107 1.29101039541345 -0.751703649107996 174.632022857666 88.8140387303397 0.50857819360386 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773566_at SPAC25G10.08.S1 --- 5.39598943772604 --- --- --- --- 2.55495381355286 10.3773231506348 10.2387008666992 7.09467124938965 0.5 0.018554700538516 0.0676269978284836 0.0461426004767418 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25G10.08 /DEF=translation initiation factor --- --- --- --- --- --- SPAC25G10.08 // |||eukaryotic translation initiation factor eIF3b |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.39598943772604 4.06164804059777 2.59937162737759 4.0073917627738 2.77682955040349 Max fold change at or above threshold 4 5.39598943772604 Max fold change at or above threshold APPAAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1775618_at SPCC825.02.S1 --- 5.39450156862717 --- --- --- --- 0.750098884105682 1.11000323295593 2.20719432830811 1.10593974590302 0.919434010982513 0.828612983226776 0.633789002895355 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC825.02 /DEF=similar to human alpha glucosidase II beta subunit --- --- --- --- --- --- D89245 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1565. // gb // 11 // --- /// SPCC825.02 // |||cell surface signalling protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.86391739476339 1.47980920446156 5.39450156862717 2.94253781078433 1.47439193596667 Max fold change at or above threshold 0 5.39450156862717 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779879_at SPBC947.08c.S1 --- 5.39381754001124 --- --- --- --- 2.35680556297302 1.06244587898254 12.71217918396 6.95954561233521 0.601073980331421 0.805419981479645 0.366210997104645 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC947.08c /DEF=histone promoter control protein (predicted) --- --- --- --- --- --- SPBC947.08c // |||histone promoter control protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.35480153264855 -2.2182829352494 3.72232029854047 5.39381754001124 2.95295705410505 Max fold change at or above threshold 2 5.39381754001124 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779231_at SPBC530.04.S1 --- 5.39367551329975 --- --- --- --- 7.22759866714478 3.92813181877136 2.50286507606506 3.35741233825684 0.725830018520355 0.5 0.780517995357513 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC530.04 /GEN=mod5 /DEF=non-essential (PMID 12789340) --- --- --- --- --- --- SPBC530.04 // |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.39367551329975 -1.8399582805766 1.23641596733154 -2.8877300403695 -2.15272892899933 Max fold change at or above threshold 4 5.39367551329975 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777300_at SPBC23G7.15c.S1 --- 5.3936107696813 --- --- --- --- 2.54632616043091 1.64293849468231 1.64550459384918 2.50657773017883 0.533936023712158 0.696289002895355 0.567627012729645 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23G7.15c /GEN=rpp202 /DEF=60S acidic ribosomal protein (P2B subunit) --- --- --- --- --- --- SPBC23G7.15c // |rpp202|rpp2-2|60S acidic ribosomal protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.3936107696813 -1.54986091607969 3.25643231043703 -1.54744396943585 -1.01585764916584 Max fold change at or above threshold 2 5.3936107696813 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771371_at SPAC16C9.01c.S1 --- 5.3906020118276 --- --- --- --- 1.14807677268982 1.62523698806763 3.06929659843445 0.972702324390411 0.932372987270355 0.943848013877869 0.725830018520355 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16C9.01c /DEF=pfkB family carbohydrate kinase --- --- --- --- --- --- SPAC16C9.01c // ||SPAC4G8.14c|pfkB family carbohydrate kinase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.3906020118276 1.41561699245937 -2.82776583527519 2.67342452303379 -1.18029611310872 Max fold change at or above threshold 1 5.3906020118276 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773872_at SPBC119.16c.S1 --- 5.38944218264053 --- --- --- --- 1.08842515945435 0.445223093032837 5.8660044670105 0.399246960878372 0.696289002895355 0.601073980331421 0.0805663987994194 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC119.16c /DEF=hypothetical protein --- --- --- --- --- --- SPBC119.16c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.33232598222388 -2.44467363999484 3.83145396485488 5.38944218264053 -2.72619522778516 Max fold change at or above threshold 1 5.38944218264053 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771237_at SPCC297.05.S1 --- 5.38876994072353 --- --- --- --- 0.8941530585289 4.81838512420654 1.44254434108734 0.825521528720856 0.828612983226776 0.5 0.753906011581421 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC297.05 /DEF=small GTP binding protein (predicted) --- --- --- --- --- --- SPCC297.05 // |||small GTP binding protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.12984348993051 5.38876994072353 -2.44186287646759 1.61330806546776 -1.08313717743302 Max fold change at or above threshold 1 5.38876994072353 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780086_at SPBC19G7.17.S1 --- 5.38523627977194 --- --- --- --- 8.17483043670654 15.2313480377197 7.3847713470459 1.51800775527954 0.129638999700546 0.194580003619194 0.149657994508743 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19G7.17 /DEF=translocon (predicted) --- --- --- --- --- --- SPBC19G7.17 // ||SPBC36B7.01|translocon |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.04090582472354 1.86320048539821 -3.05980436120225 -1.10698490887963 -5.38523627977194 Max fold change at or above threshold 3 5.38523627977194 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771561_at YPL141C.S1 Hypothetical protein 5.37503598585216 167.265296936035 761.616577148438 --- --- 5737 // cytoplasm // inferred from direct assay 4672 // protein kinase activity // inferred from sequence similarity 737.299499511719 197.359512329102 137.171081542969 785.933654785156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL141C /GEN=RPL33A /DB_XREF=GI:6325116 /SEG=NC_001148:-283463,286060 /DEF=Hypothetical ORF /NOTE=Ypl141cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 9020587]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-72 /// hanks // 2.2.12 // CaMK Group; CaMK II KIN1/SNF1/Nim1; YCL24 // 1.0E-75 --- --- S0006062 // YPL141C SGDID:S0006062, Chr XVI from 286060-283463, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017080 // cdna:Genscan chromosome:SGD1:XVI:283463:285442:-1 // ensembl // 11 // --- /// GENEFINDER00000020717 // cdna:GeneFinder chromosome:SGD1:XVI:283463:285613:-1 // ensembl // 11 // --- /// YPL141C // cdna:known chromosome:SGD1:XVI:283463:286060:-1 gene:YPL141C // ensembl // 11 // --- --- No cerevisiae_gene -2.66660757999575 -3.73581942319686 -1.25265854797187 -5.37503598585216 1.06596255023318 Max fold change at or above threshold 4 5.37503598585216 Max fold change at or above threshold 0.791812506912166 -0.775047740990106 -0.949709484556271 0.932944718634211 464.440937042236 344.599965380125 0.741967251152943 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772732_at SPCC970.12.S1 --- 5.37483111374018 --- --- --- --- 0.621196925640106 1.00309681892395 1.11933183670044 2.81683611869812 0.567627012729645 0.753906011581421 0.633789002895355 0.35791015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC970.12 /DEF=sequence orphan --- --- --- --- --- --- SPCC970.12 // |mis18||kinetochore protein Mis18|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 5.37483111374018 1.61478072012401 2.11580974970627 1.80189532578101 4.53453003779041 Max fold change at or above threshold 1 5.37483111374018 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778056_at SPAC637.04.S1 --- 5.37421639934246 --- --- --- --- 0.541640400886536 0.315879136323929 0.425360292196274 0.991001904010773 0.904784977436066 0.985840022563934 0.989257991313934 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC637.04 /DEF=hypothetical protein --- --- --- --- --- --- SPAC637.04 // |||TPR repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.67785790304367 -1.71470774293587 5.37421639934246 -1.27336850858802 1.82963069665546 Max fold change at or above threshold 0 5.37421639934246 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776824_at SPBC428.14.S1 --- 5.37415335428673 --- --- --- --- 3.17142105102539 3.50044679641724 17.0437030792236 2.57600450515747 0.303466796875 0.567627012729645 0.030273400247097 0.111571997404099 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC428.14 /DEF=acetyltransferase --- --- --- --- --- --- SPBC428.14 // |||1-acylglycerol-3-phosphate acyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.22577158878909 1.10374710267041 2.46733805927332 5.37415335428673 -1.23113955921887 Max fold change at or above threshold 4 5.37415335428673 Max fold change at or above threshold APAPPA No 4 0 AAPA 3 1 0 No No x = 1
1776605_at SPBC11B10.02c.S1 --- 5.3733659130843 --- --- --- --- 1.61205756664276 7.11637687683105 8.66217517852783 5.20212316513062 0.601073980331421 0.398925989866257 0.398925989866257 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11B10.02c /GEN=his3 /DEF=histidinol-phosphate aminotransferase imidazole acetol phosphate transaminase (PMID 8159167) --- --- --- --- --- --- SPBC11B10.02c // |his3||histidinol-phosphate aminotransferase imidazole acetol phosphate transaminase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.93486339746618 4.41446820764067 3.35280984822877 5.3733659130843 3.2270083108536 Max fold change at or above threshold 3 5.3733659130843 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778941_at SPBC1709.17.S1 --- 5.37237324719954 --- --- --- --- 0.576777994632721 2.98003482818604 3.09866666793823 0.638082683086395 0.943848013877869 0.466064006090164 0.398925989866257 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1709.17 /DEF=folylpolyglutamate synthase (predicted) --- --- --- --- --- --- D89257 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1684. // gb // 9 // --- /// SPBC1709.17 // |||folylpolyglutamate synthase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.59523057843203 5.16669300132307 -1.00309000178295 5.37237324719954 1.10628818891177 Max fold change at or above threshold 2 5.37237324719954 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778926_at SPAC3G6.05.S1 --- 5.3702350111832 --- --- --- --- 3.503249168396 0.652345597743988 1.33381593227386 2.86337685585022 0.633789002895355 0.624755859375 0.5 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G6.05 /DEF=Mvp17PMP22 family --- --- --- --- --- --- SPAC3G6.05 // |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.83466129547291 -5.3702350111832 1.38136705192949 -2.62648622169606 -1.22346772526237 Max fold change at or above threshold 2 5.3702350111832 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771366_at SPCP31B10.05.S1 --- 5.36911660967229 --- --- --- --- 6.50462102890015 4.0908031463623 2.45465707778931 3.73473596572876 0.171387001872063 0.466064006090164 0.696289002895355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP31B10.05 /DEF=tyrosyl-DNA phosphodiesterase (predicted) --- --- --- --- --- --- SPCP31B10.05 // |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.36911660967229 -1.59005965238985 -1.50911235908194 -2.64991028187053 -1.74165485554771 Max fold change at or above threshold 3 5.36911660967229 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770359_at SPCC188.04c.S1 --- 5.36825650004146 --- --- --- --- 2.88994097709656 5.73211908340454 2.29294872283936 0.538338840007782 0.533936023712158 0.0239257998764515 0.601073980331421 0.696289002895355 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC188.04c /DEF=involved in intracellular protein transport (predicted) --- --- --- --- --- --- SPCC188.04c // |spc25||kinetochore protein Spc25|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.39086059397468 1.98347271755129 -4.24877131312221 -1.26036005441846 -5.36825650004146 Max fold change at or above threshold 2 5.36825650004146 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1771759_at SPBC25B2.05.S1 --- 5.36683354544987 --- --- --- --- 1.84672880172729 9.10624504089355 5.03111457824707 4.06316184997559 0.432372987270355 0.219482004642487 0.219482004642487 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25B2.05 /GEN=mis3 /DEF=RNA-binding protein --- --- --- --- --- --- SPBC25B2.05 // |mis3||KH domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.83300140903221 4.93101371050056 5.36683354544987 2.72433861081353 2.20019411955627 Max fold change at or above threshold 3 5.36683354544987 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769572_at SPAC1006.06.S1 --- 5.3616791857852 --- --- --- --- 3.08120393753052 0.574671447277069 8.61899185180664 0.924952924251556 0.432372987270355 0.822998046875 0.303710997104645 0.6572265625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1006.06 /GEN=rgf2 /DEF=GDP-GTP exchange protein for Rho1p (predicted) --- --- --- --- --- --- SPAC1006.06 // |rgf2||GDP-GTP exchange protein for Rho1p |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.85525167621807 -5.3616791857852 1.70826585293495 2.7972805521969 -3.33120081762402 Max fold change at or above threshold 2 5.3616791857852 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779048_at SPAC186.01.S1 --- 5.36081854505931 --- --- --- --- 1.18112790584564 5.10215950012207 6.18589353561401 2.74878334999084 0.828612983226776 0.601073980331421 0.334473013877869 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC186.01 /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPAC186.01 // |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.36081854505931 4.31973495408113 3.6689251403333 5.23727659383778 2.32725290494497 Max fold change at or above threshold 3 5.36081854505931 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778671_at SPAC3H8.07c.S1 --- 5.35920040039445 --- --- --- --- 0.866035938262939 0.527353525161743 2.1066906452179 4.64126014709473 0.633789002895355 0.725830018520355 0.219482004642487 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H8.07c /DEF=prefoldin (subunit 3) --- --- --- --- --- --- SPAC3H8.07c // |||prefoldin |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 4.69969700623662 -1.64223030081636 -3.54878749567612 2.43256723207516 5.35920040039445 Max fold change at or above threshold 1 5.35920040039445 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779730_at SPBC713.10.S1 --- 5.35366624436108 --- --- --- --- 3.14439487457275 3.06179666519165 8.273512840271 3.29524731636047 0.334473013877869 0.398925989866257 0.194580003619194 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC713.10 /GEN=tim16 /DEF=TIM23 translocase complex --- --- --- --- --- --- SPBC713.10 // |tim16||TIM23 translocase complex|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -5.35366624436108 -1.02697703943574 -2.01909162564186 2.63119397222499 1.04797503106483 Max fold change at or above threshold 4 5.35366624436108 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778155_at YJL118W.S1 Hypothetical protein 5.35343483217612 42.7435493469238 178.343444824219 --- --- --- --- 171.3916015625 32.0152587890625 53.4718399047852 185.295288085938 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL118W /GEN=RPE1 /DB_XREF=GI:6322342 /SEG=NC_001142:+191559,192218 /DEF=Hypothetical ORF /NOTE=Yjl118wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003654 // YJL118W SGDID:S0003654, Chr X from 191559-192218, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024045 // cdna:Genscan chromosome:SGD1:X:191559:192218:1 // ensembl // 11 // --- /// YJL118W // cdna:known chromosome:SGD1:X:191559:192218:1 gene:YJL118W // ensembl // 11 // --- YJL119C // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene 1.56686330161534 -5.35343483217612 -1.56422363722186 -3.20526845284713 1.08112233269707 Max fold change at or above threshold 4 5.35343483217612 Max fold change at or above threshold 0.770410646872289 -0.994262539216706 -0.7225962534855 0.946448145829917 110.543497085571 78.9813909295772 0.714482470809097 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770906_at SPAC1142.03c.S1 --- 5.35106573945781 --- --- --- --- 0.487936586141586 2.61098074913025 1.61315369606018 1.39371156692505 0.919434010982513 0.5 0.780517995357513 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1142.03c /GEN=swi2 /DEF=AT hook protein (inferred from context) --- --- --- --- --- --- SPAC1142.03c // |swi2|SPAC17G6.20c|Swi5-complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.79658566364747 5.35106573945781 -1.57230162535675 3.30607243210921 2.85633749652999 Max fold change at or above threshold 1 5.35106573945781 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773179_at YBR055C.S1 Splicing factor, component of the U4/U6-U5 snRNP complex 5.34669943333049 92.419548034668 460.998977661133 PRP6 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 31202 // RNA splicing factor activity, transesterification mechanism // inferred from physical interaction 421.598419189453 78.8520889282227 105.987007141113 500.399536132813 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR055C /GEN=PRP6 /DB_XREF=GI:6319529 /SEG=NC_001134:-344562,347261 /DEF=Splicing factor, component of the U4/U6-U5 snRNP complex /NOTE=Prp6p; go_component: U4/U6 x U5 tri-snRNP complex [goid GO:0046540] [evidence TAS] [pmid 10377396]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10377396] --- --- --- --- --- --- S0000259 // PRP6 SGDID:S0000259, Chr II from 347299-344600, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000021183 // cdna:Genscan chromosome:SGD1:II:344600:347299:-1 // ensembl // 10 // --- /// GENEFINDER00000022198 // cdna:GeneFinder chromosome:SGD1:II:344600:347299:-1 // ensembl // 10 // --- /// YBR055C // cdna:known chromosome:SGD1:II:344600:347299:-1 gene:YBR055C // ensembl // 10 // --- --- No cerevisiae_gene -2.93901124956095 -5.34669943333049 -1.08443131032397 -3.97783115649382 1.18691037099916 Max fold change at or above threshold 4 5.34669943333049 Max fold change at or above threshold 0.672332219819669 -0.918120833246324 -0.792206097752307 1.03799471117896 276.7092628479 215.502324699558 0.77880415885468 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771815_at SPBP23A10.13.S1 --- 5.34565427253208 --- --- --- --- 2.5178849697113 8.52597236633301 13.4597425460815 5.2280387878418 0.696289002895355 0.24609400331974 0.194580003619194 0.26708984375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP23A10.13 /GEN=orc4 /DEF=origin recognition complex (subunit 4) --- --- --- --- --- --- AF125185 // Schizosaccharomyces pombe origin recognition complex subunit 4-related protein Orp4p (orp4) mRNA, complete cds. // gb // 11 // --- /// SPBP23A10.13 // |orc4|orp4|origin recognition complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.63606081398161 3.38616436767188 -1.90193626675868 5.34565427253208 2.07636125189676 Max fold change at or above threshold 4 5.34565427253208 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778558_at SPBC1773.12.S1 --- 5.33805905243011 --- --- --- --- 0.781857371330261 0.301843523979187 3.30127358436584 0.146468475461006 0.850341975688934 0.953857004642487 0.194580003619194 0.991943001747131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1773.12 /DEF=transcription factor (predicted) --- --- --- --- --- --- SPBC1773.12 // |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.11777480123714 -2.59027379823518 -3.5897868851472 4.22234758591458 -5.33805905243011 Max fold change at or above threshold 1 5.33805905243011 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-PheX-5_at AFFX-PheX-5 --- 5.33750692323483 --- --- --- --- 0.18997098505497 0.57926881313324 1.01397144794464 0.279357939958572 0.986189484596252 0.971542716026306 0.927300095558167 0.98334527015686 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2028-2375 of gb:M24537.1, not 100% identical /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. --- --- --- --- --- --- M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-PheX-5 // --- // unknown // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-PheX-5 // --- // unknown // --- // --- /// AFFX-PheX-5 // --- // unknown // --- // --- /// AFFX-PheX-5 // --- // gb // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// M24537 // M24537 B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// M24537 // M24537 B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-PheX-5 // B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2028-2375 of gb:M24537.1, not 100% identical /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. // affx // --- // --- /// M24537 // Bacillus subtilis /REF=M24537 /DEF=B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 /LEN=1409 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-PheX-5 // --- // unknown // --- // --- /// AFFX-PheX-5 // B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2028-2375 of gb:M24537.1, not 100% identical /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. // affx // --- // --- /// M24537 // M24537 B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-PheX-5 // --- // unknown // --- // --- /// AFFX-PheX-5 // --- // affx // --- // --- /// AFFX-PheX-5 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-PheX-5 // --- // affx // --- // --- /// AFFX-PheX-5 // --- // affx // --- // --- /// AFFX-PheX-5 // --- // affx // --- // --- /// AFFX-PheX-5 // --- // affx // --- // --- /// AFFX-PheX-5 // --- // affx // --- // --- /// AFFX-PheX-5 // --- // affx // --- // --- /// AFFX-PheX-5 // --- // affx // --- // --- /// AFFX-PheX-5 // --- // affx // --- // --- /// AFFX-PheX-5 // --- // affx // --- // --- /// AFFX-PheX-5 // --- // affx // --- // --- /// AFFX-PheX-5 // --- // affx // --- // --- BX537518 // gb // 1 // Cross Hyb Matching Probes /// 50812173 // gb // 19 // Negative Strand Matching Probes AFFX_control No 1.1443254339626 3.04924887853597 1.45633798861801 5.33750692323483 1.47052951206068 Max fold change at or above threshold 0 5.33750692323483 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779596_at SPBC23E6.01c.S1 --- 5.33674837280245 --- --- --- --- 1.09566557407379 5.84729146957397 2.15400815010071 0.940772831439972 0.919434010982513 0.567627012729645 0.805419981479645 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23E6.01c /DEF=RNA-binding protein --- --- --- --- --- --- SPBC23E6.01c // ||SPBPJ758.01|RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.27324875386772 5.33674837280245 2.21369064386028 1.96593577554134 -1.16464414942419 Max fold change at or above threshold 1 5.33674837280245 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779138_at SPAC6G9.10c.S1 --- 5.33576624819279 --- --- --- --- 0.685522317886353 0.409613996744156 3.65778684616089 0.727184474468231 0.753906011581421 0.943848013877869 0.822998046875 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G9.10c /GEN=sen1 /DEF=DNA2NAM7 family --- --- --- --- --- --- SPAC6G9.10c // |sen1||DNA2/NAM7 family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 4.80251341691218 -1.67358128222002 -1.57468252627898 5.33576624819279 1.0607743256417 Max fold change at or above threshold 1 5.33576624819279 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779621_at SPAC1F12.02c.S1 --- 5.33545043539841 --- --- --- --- 1.48371028900146 1.57243573665619 0.566541254520416 0.278085291385651 0.850341975688934 0.725830018520355 0.904784977436066 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F12.02c /GEN=p23fy /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC1F12.02c // |p23fy||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- U97399 // gb // 6 // Cross Hyb Matching Probes No No -4.39993990246524 1.059799711785 -3.19823270940724 -2.61889187621022 -5.33545043539841 Max fold change at or above threshold 0 5.33545043539841 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770471_at SPAC17G6.07c.S1 --- 5.3351177270557 --- --- --- --- 3.40738582611084 8.26786422729492 0.886692762374878 4.85226774215698 0.567627012729645 0.0676269978284836 0.601073980331421 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G6.07c /DEF=SNARE (predicted) --- --- --- --- --- --- SPAC17G6.07c // |||SNARE |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.3351177270557 2.4264537828203 1.72277696875622 -3.84280324673526 1.42404411762648 Max fold change at or above threshold 3 5.3351177270557 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770366_at SPAC3H5.08c.S1 --- 5.33415684214441 --- --- --- --- 1.18932974338531 5.13954019546509 6.34407138824463 0.268405318260193 0.466064006090164 0.432372987270355 0.303710997104645 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H5.08c /DEF=WD repeat protein --- --- --- --- --- --- SPAC3H5.08c // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.77593624261676 4.3213753158446 2.06400195012018 5.33415684214441 -4.43109604196581 Max fold change at or above threshold 2 5.33415684214441 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770767_at YFL030W.S1 Alanine : glyoxylate aminotransferase, catalyzes the synthesis of glycine from glyoxylate, which is one of three pathways for glycine biosynthesis in yeast; has similarity to mammalian and plant alanine : glyoxylate aminotransferases 5.33246546605312 5244.66674804688 1230.88269042969 AGX1 6545 // glycine biosynthesis // inferred from genetic interaction /// 6545 // glycine biosynthesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 8453 // alanine-glyoxylate transaminase activity // inferred from mutant phenotype /// 8453 // alanine-glyoxylate transaminase activity // inferred from sequence similarity 1105.36474609375 5894.3193359375 4595.01416015625 1356.40063476563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL030W /GEN=AGX1 /DB_XREF=GI:14318489 /SEG=NC_001138:+76829,77986 /DEF=Alanine : glyoxylate aminotransferase, catalyzes the synthesis of glycine from glyoxylate, which is one of three pathways for glycine biosynthesis in yeast; has similairty to mammalian and plant alanine : glyoxylate aminotransferases /NOTE=Agx1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: alanine-glyoxylate transaminase activity [goid GO:0008453] [evidence IMP,ISS] [pmid 14745783]; go_process: glycine biosynthesis [goid GO:0006545] [evidence IGI,IMP] [pmid 14745783] --- --- --- --- --- --- S0001864 // AGX1 SGDID:S0001864, Chr VI from 76829-77986, Verified ORF // sgd // 10 // --- /// GENEFINDER00000018559 // cdna:GeneFinder chromosome:SGD1:VI:76829:77986:1 // ensembl // 10 // --- /// GENSCAN00000023216 // cdna:Genscan chromosome:SGD1:VI:76829:77986:1 // ensembl // 10 // --- /// YFL030W // cdna:known chromosome:SGD1:VI:76829:77986:1 gene:YFL030W // ensembl // 10 // --- --- No cerevisiae_gene -1.3978220728938 5.33246546605312 1.74480328758845 4.15701167998579 1.22710683469779 Max fold change at or above threshold 4 5.33246546605312 Max fold change at or above threshold -0.896158629576187 1.11642949202611 0.570388364666196 -0.790659227116124 3237.77471923828 2379.50057363504 0.734918510388161 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774397_at SPBC428.03c.S1 --- 5.33214076177532 --- --- --- --- 3.84719443321228 2.0909481048584 5.9804859161377 0.721510291099548 0.5 0.432372987270355 0.091552734375 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC428.03c /GEN=pho4 /DEF=acid phosphatase activity --- --- --- --- --- --- SPBC428.03c // |pho4||acid phosphatase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.33179677420124 -1.83992822407843 -1.05000967609736 1.55450576256532 -5.33214076177532 Max fold change at or above threshold 2 5.33214076177532 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778159_at SPCC18B5.04.S1 --- 5.33148311661908 --- --- --- --- 2.33133172988892 9.54537868499756 12.4294557571411 4.80418395996094 0.828612983226776 0.466064006090164 0.5 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18B5.04 /GEN=rsm18 /DEF=mitochondrial ribosomal protein subunit s18 --- --- --- --- --- --- SPCC18B5.04 // |rsm18||mitochondrial ribosomal protein subunit s18|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 5.2248324199857 4.09438886908316 2.5943652453787 5.33148311661908 2.06070371640755 Max fold change at or above threshold 3 5.33148311661908 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777830_at SPCC16C4.14c.S1 --- 5.32911539433858 --- --- --- --- 1.18641996383667 6.32256889343262 2.99216151237488 0.786165237426758 0.828612983226776 0.5 0.601073980331421 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16C4.14c /GEN=sfc4 /DEF=transcription factor TFIIIC complex --- --- --- --- --- --- SPCC16C4.14c // |sfc4||transcription factor TFIIIC comple subunit Sfc4|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.82235642977803 5.32911539433858 -1.57359443294444 2.52200873516892 -1.50912290108376 Max fold change at or above threshold 2 5.32911539433858 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-J01636-4_at AFFX-Sc-J01636-4 --- 5.32905275505035 --- --- --- --- 3.29990410804749 10.5821828842163 2.26415586471558 0.619229018688202 0.366210997104645 0.194580003619194 0.366210997104645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL J01636 /FEA=CDS_4 /DB_XREF=AAA24055.1 GI:551814 /NOTE=thiogalactoside acetyltransferase (ttg start codon) /GEN=lacA --- --- --- --- --- --- AFFX-Sc-J01636-4 // --- // affx // --- // --- --- No No -1.88012965351854 3.20681527030119 -1.82051737188012 -1.45745447982311 -5.32905275505035 Max fold change at or above threshold 2 5.32905275505035 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778827_at SPAC4G9.06c.S1 --- 5.32867040612815 --- --- --- --- 0.636150717735291 0.72534704208374 3.38983750343323 0.448164999485016 0.850341975688934 0.932372987270355 0.274170011281967 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G9.06c /DEF=sequence orphan --- --- --- --- --- --- SPAC4G9.06c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.5929633249131 1.14021256576742 -1.70423443135941 5.32867040612815 -1.41945649139555 Max fold change at or above threshold 1 5.32867040612815 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770625_x_at YNR072W.S1 Protein of unknown function with similarity to hexose transporter family members, expression is repressed by high levels of glucose /// Protein of unknown function with similarity to hexose transporter family members, expression is induced by low levels of glucose and repressed by high levels of glucose 5.32695043849027 66.5666408538818 149.639877319336 HXT17 /// HXT13 8645 // hexose transport // inferred from genetic interaction 5886 // plasma membrane // inferred from sequence similarity 5353 // fructose transporter activity // inferred from genetic interaction /// 5355 // glucose transporter activity // inferred from genetic interaction /// 15578 // mannose transporter activity // inferred from genetic interaction 146.12809753418 53.9280815124512 79.2052001953125 153.151657104492 0.00195312988944352 0.00415039015933871 0.00292969006113708 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR072W /GEN=HXT17 /DB_XREF=GI:6324400 /SEG=NC_001146:+772654,774348 /DEF=Protein of unknown function with similarity to hexose transporter family members, expression is repressed by high levels of glucose /NOTE=Hxt17p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 8929273]; go_function: fructose transporter activity [goid GO:0005353] [evidence IGI] [pmid 10618490]; go_function: glucose transporter activity [goid GO:0005355] [evidence IGI] [pmid 10618490]; go_function: mannose transporter activity [goid GO:0015578] [evidence IGI] [pmid 10618490]; go_process: hexose transport [goid GO:0008645] [evidence IGI] [pmid 10618490] --- --- --- --- --- S0000795 // span:51-73,108-130,137-154,169-188,195-217,227-249,318-340,355-374,383-402,422-444,457-479,483-505 // numtm:12 /// S0005355 // span:51-73,108-130,137-154,169-188,195-217,227-249,318-340,355-374,383-402,422-444,457-479,483-505 // numtm:12 S0005355 // HXT17 SGDID:S0005355, Chr XIV from 772655-774349, Verified ORF // sgd // 11 // --- /// GENSCAN00000020098 // cdna:Genscan chromosome:SGD1:XIV:772655:774349:1 // ensembl // 11 // --- /// GENEFINDER00000020496 // cdna:GeneFinder chromosome:SGD1:XIV:772655:774349:1 // ensembl // 11 // --- /// YNR072W // cdna:known chromosome:SGD1:XIV:772655:774349:1 gene:YNR072W // ensembl // 11 // --- S0000795 // sgd // 1 // Cross Hyb Matching Probes /// GENSCAN00000016749 // ensembl // 1 // Cross Hyb Matching Probes /// GENEFINDER00000019605 // ensembl // 1 // Cross Hyb Matching Probes /// YEL069C // ensembl // 1 // Cross Hyb Matching Probes No cerevisiae_gene -5.32695043849027 -2.70968470295835 1.52298125931497 -1.84493060018587 1.04806440163686 Max fold change at or above threshold 4 5.32695043849027 Max fold change at or above threshold 0.773748808360212 -1.10238414683877 -0.588032442580759 0.916667781059318 108.103259086609 49.1436471846153 0.454599126796381 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773793_at SPAC343.08c.S1 --- 5.32506789096793 --- --- --- --- 3.61959886550903 0.87840074300766 0.679728209972382 0.87384170293808 0.753906011581421 0.943848013877869 0.932372987270355 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC343.08c /GEN=mrp17 /DEF=mitochondrial ribosomal protein subunit YmS16 --- --- --- --- --- --- SPAC343.08c // |mrp17||mitochondrial ribosomal protein subunit Mrp17|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.09823654367624 -4.12066917556953 -3.1058449945485 -5.32506789096793 -4.14216768705249 Max fold change at or above threshold 1 5.32506789096793 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775918_at YER159C.S1 Protein that forms a heterodimeric histone-fold NC2 general transcription regulator complex with Ydr1p that binds to TBP and represses RNA pol II transcription during assembly of the preinitiation complex, homologous to human NC2alpha 5.32251313708103 2409.66784667969 482.554977416992 BUR6 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 5634 // nucleus // inferred from physical interaction 3714 // transcription corepressor activity // inferred from genetic interaction /// 3714 // transcription corepressor activity // inferred from mutant phenotype 457.307861328125 2434.02709960938 2385.30859375 507.802093505859 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER159C /GEN=BUR6 /DB_XREF=GI:6321007 /SEG=NC_001137:-491525,491953 /DEF=Homolog of DRAP1 (NC2alpha); encodes a histone fold-containing protein homologous to one of the subunits of NC2; involved in transcription initiation /NOTE=Bur6p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 10713169]; go_function: transcription corepressor activity [goid GO:0003714] [evidence IGI,IMP] [pmid 10713169]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IGI,IMP] [pmid 10713169] --- --- --- --- --- --- S0000961 // BUR6 SGDID:S0000961, Chr V from 491953-491525, reverse complement, Verified ORF // sgd // 11 // --- /// Y09265 // S.cerevisiae mRNA for repressor of class II transcription (429 bp). // gb // 11 // --- /// GENEFINDER00000019620 // cdna:GeneFinder chromosome:SGD1:V:491525:491953:-1 // ensembl // 11 // --- /// YER159C // cdna:known chromosome:SGD1:V:491525:491953:-1 gene:YER159C // ensembl // 11 // --- YER158W-A // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene 4.22478702793662 5.32251313708103 1.2310738212396 5.21597985834428 1.11041627850238 Max fold change at or above threshold 4 5.32251313708103 Max fold change at or above threshold -0.888422624621695 0.887624895166123 0.843852173262255 -0.843054443806683 1446.11141204834 1112.98780931121 0.769641813236728 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770246_at SPAC959.03c.S1 --- 5.32148624255797 --- --- --- --- 1.33819544315338 0.603224098682404 0.538284063339233 4.2745156288147 0.888427972793579 0.943848013877869 0.976073980331421 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC959.03c /DEF=ribonucleoprotein (RNP) complex (predicted) (PMID 12068309) --- --- --- --- --- --- SPAC959.03c // |||U3 snoRNP protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.35932093411157 -2.21840514342239 5.32148624255797 -2.48603949901826 3.19423866721743 Max fold change at or above threshold 1 5.32148624255797 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770110_at SPBC18H10.07.S1 --- 5.31805308803416 --- --- --- --- 0.468502670526505 0.568286538124084 1.25474917888641 0.541033148765564 0.850341975688934 0.850341975688934 0.696289002895355 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18H10.07 /DEF=small nuclear ribonucleoprotein (snRNP) (predicted) (pers. comm. J.A. Potashkin) --- --- --- --- --- --- SPBC18H10.07 // |||small nuclear ribonucleoprotein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.32693691024547 1.21298462927744 5.31805308803416 2.67821136958798 1.1548133720509 Max fold change at or above threshold 0 5.31805308803416 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778162_at SPBC18E5.12c.S1 --- 5.31666026973093 --- --- --- --- 6.36410713195801 1.19701218605042 5.1414942741394 4.46590805053711 0.171387001872063 0.888427972793579 0.366210997104645 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18E5.12c /DEF=mitochondrial processing peptidase complex (alpha subunit) (predicted) --- --- --- --- --- --- SPBC18E5.12c // |mas2|SPBC23G7.02c|mitochondrial processing peptidase complex alpha subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -2.22633279709403 -5.31666026973093 -4.69837375155718 -1.23779329366719 -1.42504213251605 Max fold change at or above threshold 3 5.31666026973093 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780028_at SPAC11E3.07.S1 --- 5.31537040959043 --- --- --- --- 2.33028173446655 12.3863105773926 0.844045460224152 1.27185475826263 0.633789002895355 0.533936023712158 0.850341975688934 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11E3.07 /GEN=vma4 /DEF=vacuolar ATP synthase (subunit E) (predicted) --- --- --- --- --- --- SPAC11E3.07 // |vma4||vacuolar ATP synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.21299050226573 5.31537040959043 -3.30168095415202 -2.76084860861369 -1.83219170217969 Max fold change at or above threshold 1 5.31537040959043 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776515_at SPAPB17E12.14c.S1 --- 5.31457106880334 --- --- --- --- 2.70789194107056 10.267484664917 8.07857608795166 4.82396078109741 0.601073980331421 0.274170011281967 0.303710997104645 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB17E12.14c /DEF=6-phosphofructo-2-kinase (predicted) --- --- --- --- --- --- SPAPB17E12.14c // |||6-phosphofructo-2-kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.31457106880334 3.79168921373494 1.80882891833415 2.98334507571149 1.78144508203318 Max fold change at or above threshold 4 5.31457106880334 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1772765_at SPAC22H10.06c.S1 --- 5.31435371935075 --- --- --- --- 0.333686023950577 0.240612208843231 0.49319526553154 0.121122010052204 0.870360970497131 0.753906011581421 0.828612983226776 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22H10.06c /DEF=dubious --- --- --- --- --- --- SPAC22H10.06c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.26117192075449 -1.38682083321876 5.31435371935075 1.4780219431803 -2.75495778023133 Max fold change at or above threshold 0 5.31435371935075 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770741_at SPACUNK4.08.S1 --- 5.30946502282324 --- --- --- --- 1.17889201641083 6.25928592681885 6.17720127105713 5.24650096893311 0.466064006090164 0.398925989866257 0.171387001872063 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPACUNK4.08 /DEF=dipeptidyl aminopeptidase (predicted) --- --- --- --- --- --- SPACUNK4.08 // |||dipeptidyl aminopeptidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.40431809731423 5.30946502282324 3.64797376710479 5.23983637607777 4.45036601817547 Max fold change at or above threshold 3 5.30946502282324 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Bs-thr-3_s_at AFFX-r2-Bs-thr-3 --- 5.30875619068487 --- --- --- --- 1.16428017616272 1.15548622608185 6.18087959289551 0.806512117385864 0.696289002895355 0.888427972793579 0.366210997104645 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=thrB /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 1735-2143 of gb:X04603.1 /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase. --- --- --- --- --- --- AFFX-r2-Bs-thr-3 // --- // gb // --- // --- /// X04603 // Bacillus subtilis /REF=X04603 /DEF=B subtilis thrC, thrB genes corresponding to nucleotides 1689-2151 of X04603 /LEN=2073 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-r2-Bs-thr-3 // B. subtilis /GEN=thrB /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 1735-2143 of gb:X04603.1 /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase. // affx // --- // --- /// AFFX-r2-Bs-thr-3 // --- // unknown // --- // --- /// AFFX-r2-Bs-thr-3 // --- // unknown // --- // --- /// AFFX-r2-Bs-thr-3 // --- // unknown // --- // --- /// AFFX-r2-Bs-thr-3 // --- // unknown // --- // --- /// AFFX-r2-Bs-thr-3 // B. subtilis /GEN=thrB /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 1735-2143 of gb:X04603.1 /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase. // affx // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-thr-3 // --- // unknown // --- // --- /// AFFX-r2-Bs-thr-3 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-3 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-thr-3 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-3 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-3 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-3 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-3 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-3 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-3 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-3 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-3 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-3 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-3 // --- // affx // --- // --- 50812173 // gb // 11 // Negative Strand Matching Probes AFFX_control No -1.92843343919289 -1.00761060571937 -1.74304455496788 5.30875619068487 -1.44359911161221 Max fold change at or above threshold 1 5.30875619068487 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779063_at SPCC569.08c.S1 --- 5.30665076771576 --- --- --- --- 0.961535096168518 0.807802736759186 0.520449876785278 0.354847520589828 0.828612983226776 0.753906011581421 0.953857004642487 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC569.08c /GEN=ade5 /DEF=glycinamide ribonucleotide transformylase --- --- --- --- --- --- AF171879 // Schizosaccharomyces pombe glycinamide ribonucleotide transformylase Ade8 (ade8) mRNA, complete cds. // gb // 10 // --- /// SPCC569.08c // |ade5|ade8|glycinamide ribonucleotide transformylase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 5.30665076771576 -1.19030928271683 -2.26722407918646 -1.84750758729686 -2.70971344134025 Max fold change at or above threshold 0 5.30665076771576 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774422_at SPAC14C4.03.S1 --- 5.30506272551271 --- --- --- --- 2.05313873291016 7.27422571182251 10.8920297622681 2.21930193901062 0.919434010982513 0.696289002895355 0.466064006090164 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC14C4.03 /GEN=mek1 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPAC14C4.03 // |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.92858423538418 3.54297817055543 4.59432423293164 5.30506272551271 1.08093130943224 Max fold change at or above threshold 2 5.30506272551271 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773298_at SPBC1709.10c.S1 --- 5.30379779034138 --- --- --- --- 0.234322905540466 0.676767408847809 1.2428013086319 0.530794858932495 0.953857004642487 0.780517995357513 0.753906011581421 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1709.10c /DEF=metallochaperone (predicted) --- --- --- --- --- --- SPBC1709.10c // |||metallochaperone |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.01270940271945 2.88818289994673 1.13567150800018 5.30379779034138 2.26522822302931 Max fold change at or above threshold 0 5.30379779034138 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773487_at SPAC607.03c.S1 --- 5.30250846552616 --- --- --- --- 3.54352760314941 18.7895851135254 10.917760848999 5.10284233093262 0.357666015625 0.0561522990465164 0.0107421996071935 0.0239257998764515 A M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC607.03c /GEN=snu13 /DEF=U4U6.U5 snRNP component --- --- --- --- --- --- SPAC607.03c // |snu13||U3 snoRNP protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.77552616521757 5.30250846552616 1.4139484850328 3.08104298081255 1.44004588151009 Max fold change at or above threshold 4 5.30250846552616 Max fold change at or above threshold AAMPPP No 4 0 AMPP 1 2 1 No No 1 < x = 2
1779902_at SPAC3C7.04.S1 --- 5.30077076432821 --- --- --- --- 3.05930376052856 0.57714319229126 1.76898860931396 1.05283832550049 0.432372987270355 0.932372987270355 0.601073980331421 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3C7.04 /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPAC3C7.04 // |||transcriptio factor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.11009445117342 -5.30077076432821 -3.19246039311102 -1.72940840004334 -2.90576785288877 Max fold change at or above threshold 1 5.30077076432821 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771478_at SPBC1E8.05.S1 --- 5.2999047441856 --- --- --- --- 9.51850700378418 6.43754148483276 14.0270767211914 4.75223827362061 0.432372987270355 0.219482004642487 0.129638999700546 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1E8.05 /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPBC1E8.05 // |||glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- D89103 // gb // 8 // Cross Hyb Matching Probes No No -5.2999047441856 -1.47859350129399 -3.77453415738007 1.47366353942008 -2.00295238911333 Max fold change at or above threshold 4 5.2999047441856 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772616_at SPCC1393.07c.S1 --- 5.29817157097622 --- --- --- --- 5.95936489105225 3.6123423576355 1.12479650974274 3.22303986549377 0.219482004642487 0.398925989866257 0.633789002895355 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1393.07c /DEF=sequence orphan --- --- --- --- --- --- SPCC1393.07c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.5090919947399 -1.64972317157475 -1.0114731936045 -5.29817157097622 -1.84898888619215 Max fold change at or above threshold 3 5.29817157097622 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1769664_at SPAC17G6.09.S1 --- 5.29419299374516 --- --- --- --- 1.1026611328125 1.33777010440826 5.70280599594116 0.298267602920532 0.366210997104645 0.828612983226776 0.0805663987994194 0.86572265625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G6.09 /GEN=sec62 /DEF=protein signal sequence binding activity --- --- --- --- --- --- SPAC17G6.09 // |sec62||ER protein translocation subcomplex subunit Sec62 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.66310896504484 1.21321960537059 5.29419299374516 5.17185726987158 -3.69688535400971 Max fold change at or above threshold 1 5.29419299374516 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773879_at YDR110W.S1 Nucleolar protein required for DNA replication fork blocking and recombinational hotspot activities; binds to the replication fork barrier site in the rDNA region; related to retroviral integrases 5.29400367257997 62.280912399292 346.588027954102 FOB1 183 // chromatin silencing at ribosomal DNA // inferred from direct assay /// 1302 // replicative cell aging // inferred from mutant phenotype /// 6310 // DNA recombination // inferred from mutant phenotype /// 7580 // extrachromosomal circular DNA accumulation during cell aging // inferred from mutant phenotype /// 8156 // negative regulation of DNA replication // inferred from direct assay 5730 // nucleolus // inferred from direct assay 182 // ribosomal DNA (rDNA) binding // traceable author statement /// 182 // ribosomal DNA (rDNA) binding // inferred from direct assay 321.441650390625 60.7180633544922 63.8437614440918 371.734405517578 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR110W /GEN=FOB1 /DB_XREF=GI:6320315 /SEG=NC_001136:+676096,677796 /DEF=Nucleolar protein required for DNA replication fork blocking and recombinational hotspot activities; binds to the replication fork barrier site in the rDNA region; related to retroviral integrases /NOTE=Fob1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 10230397]; go_function: ribosomal DNA (rDNA) binding [goid GO:0000182] [evidence TAS] [pmid 12374750]; go_function: ribosomal DNA (rDNA) binding [goid GO:0000182] [evidence IDA] [pmid 14645529]; go_process: DNA recombination [goid GO:0006310] [evidence IMP] [pmid 9078378]; go_process: chromatin silencing at ribosomal DNA [goid GO:0000183] [evidence IDA] [pmid 12923057]; go_process: extrachromosomal circular DNA accumulation during cell aging [goid GO:0007580] [evidence IMP] [pmid 10230397]; go_process: negative regulation of DNA replication [goid GO:0008156] [evidence IDA] [pmid 14645529] --- --- --- --- --- --- S0002517 // FOB1 SGDID:S0002517, Chr IV from 676097-677797, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023502 // cdna:GeneFinder chromosome:SGD1:IV:676097:677797:1 // ensembl // 11 // --- /// GENSCAN00000025178 // cdna:Genscan chromosome:SGD1:IV:676097:677797:1 // ensembl // 11 // --- /// YDR110W // cdna:known chromosome:SGD1:IV:676097:677797:1 gene:YDR110W // ensembl // 11 // --- --- No cerevisiae_gene -1.80682435138814 -5.29400367257997 1.02054030190829 -5.03481692055554 1.15645998291085 Max fold change at or above threshold 4 5.29400367257997 Max fold change at or above threshold 0.707296148984112 -0.868750626289164 -0.84985610872521 1.01131058603026 204.434470176697 165.428838234148 0.809202274406876 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769437_at SPAC3H5.06c.S1 --- 5.29357413354723 --- --- --- --- 2.2130868434906 4.70121049880981 1.79756081104279 0.418070435523987 0.366210997104645 0.366210997104645 0.390625 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H5.06c /GEN=pol1 /DEF=DNA polymerase alpha (catalytic subunit) (PMID 2034212) --- --- --- --- --- --- SPAC3H5.06c // |pol1|swi7, polA|DNA polymerase alpha catalytic subunit |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.18394084951896 2.12427746007238 2.37103197581563 -1.23116104328441 -5.29357413354723 Max fold change at or above threshold 1 5.29357413354723 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776494_at SPAC8F11.06.S1 --- 5.29222535288546 --- --- --- --- 3.58745360374451 1.47957289218903 6.45640707015991 0.744056761264801 0.850341975688934 0.888427972793579 0.601073980331421 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8F11.06 /DEF=hypothetical protein --- --- --- --- --- --- SPAC8F11.06 // |||nuclear envelope protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.82262943879244 -2.42465485998251 -5.29222535288546 1.79971862588574 -4.82147840125301 Max fold change at or above threshold 2 5.29222535288546 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772067_at SPBC36B7.05c.S1 --- 5.28953842022427 --- --- --- --- 7.05367088317871 3.18842077255249 1.58354020118713 1.33351349830627 0.274170011281967 0.303710997104645 0.303710997104645 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC36B7.05c /DEF=phosphatidylinositol binding (predicted) --- --- --- --- --- --- SPBC36B7.05c // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.16893925421451 -2.21227729536208 -1.19256583425965 -4.45436805323337 -5.28953842022427 Max fold change at or above threshold 2 5.28953842022427 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779312_at YCR092C.S1 Mismatch repair protein, forms dimers with Msh2p that mediate repair of insertion or deletion mutations and removal of nonhomologous DNA ends, contains a PCNA (Pol30p) binding motif required for genome stability 5.28941529009496 108.458263397217 494.757507324219 MSH3 735 // removal of nonhomologous ends // traceable author statement /// 6298 // mismatch repair // inferred from mutant phenotype /// 6310 // DNA recombination // inferred from mutant phenotype /// 6312 // mitotic recombination // inferred from mutant phenotype 228 // nuclear chromosome // inferred from physical interaction 3684 // damaged DNA binding // inferred from direct assay 482.119598388672 125.768531799316 91.1479949951172 507.395416259766 0.000244141003349796 0.000732421991415322 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR092C /GEN=MSH3 /DB_XREF=GI:6319935 /SEG=NC_001135:-276760,279903 /DEF=acts in mismatch repair in mitosis and meiosis but to a lesser extent than MSH2, required for microsatellite stability /NOTE=Msh3p; go_component: nuclear chromosome [goid GO:0000228] [evidence IPI] [pmid 10882115]; go_function: damaged DNA binding [goid GO:0003684] [evidence IDA] [pmid 8805366]; go_process: DNA recombination [goid GO:0006310] [evidence IMP] [pmid 9256462]; go_process: mismatch repair [goid GO:0006298] [evidence IMP] [pmid 8510668]; go_process: mitotic recombination [goid GO:0006312] [evidence IMP] [pmid 8849883]; go_process: removal of nonhomologous ends [goid GO:0000735] [evidence TAS] [pmid 10357855] --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 6.59999990463257 --- S0000688 // MSH3 SGDID:S0000688, Chr III from 279903-276760, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022523 // cdna:Genscan chromosome:SGD1:III:276760:279816:-1 // ensembl // 11 // --- /// GENEFINDER00000023361 // cdna:GeneFinder chromosome:SGD1:III:276760:279816:-1 // ensembl // 11 // --- /// YCR092C // cdna:known chromosome:SGD1:III:276760:279903:-1 gene:YCR092C // ensembl // 11 // --- --- No cerevisiae_gene -1.38693460675136 -3.83338814162171 -1.10382425501918 -5.28941529009496 1.05242644761916 Max fold change at or above threshold 4 5.28941529009496 Max fold change at or above threshold 0.806880792319145 -0.785995515429727 -0.940748055852189 0.919862778962772 301.607885360718 223.715466703731 0.741742764570534 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770926_at SPBC577.02.S1 --- 5.28876586754395 --- --- --- --- 0.282348871231079 1.03387463092804 0.718729436397552 0.34675458073616 0.850341975688934 0.888427972793579 0.850341975688934 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC577.02 /GEN=rpl3801 /DEF=60S ribosomal protein L38 --- --- --- --- --- --- AB006199 // Schizosaccharomyces pombe mRNA for ribosomal protein L38, partial cds. // gb // 9 // --- /// SPBC577.02 // |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.50519017409228 3.66169209892785 5.28876586754395 2.54553677960105 1.22810684251814 Max fold change at or above threshold 0 5.28876586754395 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772526_at SPAC3A11.06.S1 --- 5.28800397762008 --- --- --- --- 0.646512925624847 3.41876292228699 3.08174633979797 0.859077930450439 0.5927734375 0.194580003619194 0.171387001872063 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A11.06 /GEN=mvp1 /DEF=phosphoinositide binding (predicted) --- --- --- --- --- --- SPAC3A11.06 // |mvp1||PX domain protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.28374396716712 5.28800397762008 3.17319122419592 4.76672038199314 1.32878693743076 Max fold change at or above threshold 2 5.28800397762008 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775230_at SPBC36.08c.S1 --- 5.28791123007411 --- --- --- --- 0.879906833171844 4.65286922454834 1.44296205043793 0.537709176540375 0.828612983226776 0.194580003619194 0.567627012729645 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC36.08c /DEF=hypothetical protein --- --- --- --- --- --- SPBC36.08c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.71953633139524 5.28791123007411 2.62812457091119 1.63990322161314 -1.63639913834681 Max fold change at or above threshold 1 5.28791123007411 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777144_at SPAC23H4.13c.S1 --- 5.28770772998967 --- --- --- --- 0.936657786369324 1.95371639728546 3.97956728935242 0.909275114536285 0.953857004642487 0.696289002895355 0.366210997104645 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H4.13c /DEF=dubious --- --- --- --- --- --- SPAC23H4.13c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.28770772998967 2.08583799303955 1.41992349745554 4.24868863235316 -1.03011483696769 Max fold change at or above threshold 1 5.28770772998967 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774344_at SPBC1711.04.S1 --- 5.2875126607764 --- --- --- --- 2.75188279151917 7.33695888519287 4.08828783035278 0.52044939994812 0.633789002895355 0.366210997104645 0.5 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1711.04 /DEF=methylenetetrahydrofolate reductase (predicted) --- --- --- --- --- --- SPBC1711.04 // |||methylenetetrahydrofolate reductase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.64478469352253 2.66615965905384 -1.08315765143654 1.48563297933771 -5.2875126607764 Max fold change at or above threshold 3 5.2875126607764 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774910_at YDR407C.S1 One of 10 subunits of the transport protein particle (TRAPP) complex of the cis-Golgi which mediates vesicle docking and fusion; involved in endoplasmic reticulum (ER) to Golgi membrane traffic 5.28688322810473 119.166854858398 577.140563964844 TRS120 6888 // ER to Golgi transport // inferred from mutant phenotype 30008 // TRAPP complex // inferred from direct assay --- 574.793823242188 108.720733642578 129.612976074219 579.4873046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR407C /GEN=TRS120 /DB_XREF=GI:6320615 /SEG=NC_001136:-1284057,1287926 /DEF=targeting complex (TRAPP) component involved in ER to Golgi membrane traffic /NOTE=Trs120p; go_component: TRAPP [goid GO:0030008] [evidence IDA] [pmid 10727015]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 10727015] --- --- --- --- --- --- S0002815 // TRS120 SGDID:S0002815, Chr IV from 1287928-1284059, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025423 // cdna:Genscan chromosome:SGD1:IV:1284059:1287928:-1 // ensembl // 11 // --- /// YDR407C // cdna:known chromosome:SGD1:IV:1284059:1287928:-1 gene:YDR407C // ensembl // 11 // --- --- No cerevisiae_gene -1.15907545443703 -5.28688322810473 -1.41202684994855 -4.43469350563365 1.00816550431742 Max fold change at or above threshold 4 5.28688322810473 Max fold change at or above threshold 0.85668198746556 -0.905038009731855 -0.826066959698186 0.874422981964482 348.153709411621 264.55571279264 0.759881930425898 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769815_at SPBC83.12.S1 --- 5.28557362954334 --- --- --- --- 0.778098046779633 1.03412532806396 0.380340099334717 0.795644640922546 0.725830018520355 0.696289002895355 0.994140982627869 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC83.12 /DEF=sequence orphan --- --- --- --- --- --- SPBC83.12 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -5.28557362954334 1.32904244181562 -3.0783482261552 -2.04579545554273 1.02255062098605 Max fold change at or above threshold 0 5.28557362954334 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777775_at SPBC11C11.11c.S1 --- 5.28547447542599 --- --- --- --- 1.49022972583771 5.26533126831055 7.87657117843628 3.77858853340149 0.466064006090164 0.219482004642487 0.0561522990465164 0.24609400331974 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11C11.11c /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPBC11C11.11c // ||SPBC3B8.12|DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.45395915015439 3.5332346261921 1.93838613744088 5.28547447542599 2.535574527798 Max fold change at or above threshold 3 5.28547447542599 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1769838_at SPBC24C6.09c.S1 --- 5.2783451923522 --- --- --- --- 5.18647384643555 8.31254768371582 5.55450201034546 2.78500056266785 0.334473013877869 0.266845703125 0.219482004642487 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC24C6.09c /DEF=phosphoketolase (predicted) --- --- --- --- --- --- SPBC24C6.09c // |||phosphoketolase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.2783451923522 1.60273587216268 -1.06780426262736 1.07095922486196 -1.86228825802004 Max fold change at or above threshold 4 5.2783451923522 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772427_at SPBC13G1.10c.S1 --- 5.2767563443489 --- --- --- --- 0.382414311170578 0.536821663379669 1.266561627388 0.362434953451157 0.962401986122131 0.962401986122131 0.780517995357513 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13G1.10c /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPBC13G1.10c // |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.2767563443489 1.40376980593756 -1.0892751470688 3.31201419609802 -1.05512536119702 Max fold change at or above threshold 0 5.2767563443489 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780195_at SPAC1F7.10.S1 --- 5.27643795238598 --- --- --- --- 3.12624216079712 3.12446928024292 15.7704486846924 0.592491030693054 0.725830018520355 0.567627012729645 0.334473013877869 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F7.10 /DEF=hydantoin racemase (predicted) --- --- --- --- --- --- SPAC1F7.10 // |||hydantoin racemase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.35651112190665 -1.00056741814215 1.18437663251835 5.04453841818552 -5.27643795238598 Max fold change at or above threshold 3 5.27643795238598 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777508_at SPBP22H7.05c.S1 --- 5.27553618697482 --- --- --- --- 0.584594368934631 1.03939652442932 0.578030169010162 0.350186437368393 0.633789002895355 0.805419981479645 0.805419981479645 0.916259765625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP22H7.05c /DEF=TAT-binding protein homolog --- --- --- --- --- --- SPBP22H7.05c // |||TAT-binding protein homolog|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 5.27553618697482 1.77797902214406 -2.26378302746571 -1.01135615453378 -1.66938038299765 Max fold change at or above threshold 0 5.27553618697482 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778240_at YMR177W.S1 Putative metal transporter involved in mitochondrial iron accumulation; closely related to Mmt2p 5.27352042016424 87.3278312683105 492.117462158203 MMT1 6879 // iron ion homeostasis // inferred from genetic interaction /// 6879 // iron ion homeostasis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity --- 456.356018066406 86.5372619628906 88.1184005737305 527.87890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR177W /GEN=MMT1 /DB_XREF=GI:6323831 /SEG=NC_001145:+616565,618097 /DEF=Protein involved in mitochondrial iron accumulation /NOTE=Mmt1p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 9353309]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 9353309]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IGI,IMP] [pmid 9353309] --- --- --- --- --- S0004789 // span:163-185 // numtm:1 S0004789 // MMT1 SGDID:S0004789, Chr XIII from 616565-618097, Verified ORF // sgd // 11 // --- /// GENSCAN00000018862 // cdna:Genscan chromosome:SGD1:XIII:616565:618097:1 // ensembl // 11 // --- /// GENEFINDER00000022092 // cdna:GeneFinder chromosome:SGD1:XIII:616565:618097:1 // ensembl // 11 // --- /// YMR177W // cdna:known chromosome:SGD1:XIII:616565:618097:1 gene:YMR177W // ensembl // 11 // --- --- No cerevisiae_gene -1.5018018962593 -5.27352042016424 -1.28153518822417 -5.17889583895209 1.15672607646687 Max fold change at or above threshold 4 5.27352042016424 Max fold change at or above threshold 0.707502740101223 -0.862697641487095 -0.855984340960527 1.0111792423464 289.722646713257 235.52328762615 0.812926743207793 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778994_at SPBC577.08c.S1 --- 5.27183924168129 --- --- --- --- 0.747129440307617 1.89968430995941 3.60388469696045 0.141720831394196 0.559326171875 0.696289002895355 0.366210997104645 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC577.08c /DEF=thioredoxin-like --- --- --- --- --- --- SPBC577.08c // |||thioredoxin family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.8067707771203 2.54264416240545 3.06393744367659 4.82364166439033 -5.27183924168129 Max fold change at or above threshold 1 5.27183924168129 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770864_at YPL153C.S1 Protein kinase, required for cell-cycle arrest in response to DNA damage; activated by trans autophosphorylation when interacting with hyperphosphorylated Rad9p 5.26927923425582 23.9511957168579 140.796726226807 RAD53 6139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolism // inferred from genetic interaction /// 6281 // DNA repair // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 4712 // protein threonine/tyrosine kinase activity // inferred from direct assay 125.046104431152 23.7311592102051 24.1712322235107 156.547348022461 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL153C /GEN=RAD53 /DB_XREF=GI:6325104 /SEG=NC_001148:-261726,264191 /DEF=Protein kinase, required for cell-cycle arrest in response to DNA damage; activated by trans autophosphorylation when interacting with hyperphosphorylated Rad9p /NOTE=Rad53p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8355715]; go_function: protein threonine/tyrosine kinase activity [goid GO:0004712] [evidence IDA] [pmid 8355715]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 8355715]; go_process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism [goid GO:0006139] [evidence IGI] [pmid 9744871] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-69 /// hanks // 1.9.6 // AGC group; AGC Other; SPK1 // 1.0E-150 scop // a.4.1.Paired domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Paired domain // 0.270000010728836 --- S0006074 // RAD53 SGDID:S0006074, Chr XVI from 264191-261726, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021021 // cdna:GeneFinder chromosome:SGD1:XVI:259713:262703:-1 // ensembl // 9 // --- /// GENSCAN00000017071 // cdna:Genscan chromosome:SGD1:XVI:261726:264191:-1 // ensembl // 11 // --- /// YPL153C // cdna:known chromosome:SGD1:XVI:261726:264191:-1 gene:YPL153C // ensembl // 11 // --- --- No cerevisiae_gene -1.4491232208611 -5.26927923425582 -1.39787409409212 -5.17334421658169 1.25191703279851 Max fold change at or above threshold 4 5.26927923425582 Max fold change at or above threshold 0.621355403038057 -0.853906524724112 -0.847498556377985 1.08004967806404 82.3739609718323 68.6759031154775 0.833708884521909 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774924_at SPAC31G5.19.S1 --- 5.26817433040441 --- --- --- --- 1.58937418460846 8.35309219360352 3.19502663612366 2.21636915206909 0.432372987270355 0.219482004642487 0.466064006090164 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31G5.19 /DEF=TAT-binding protein homolog --- --- --- --- --- --- SPAC31G5.19 // |||TAT-binding protein homolog|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.26817433040441 5.25558567296177 2.77595557427987 2.01024193488505 1.39449172733046 Max fold change at or above threshold 2 5.26817433040441 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770691_at SPAC23G3.06.S1 --- 5.26290011204098 --- --- --- --- 7.63899755477905 12.0775527954102 13.4538087844849 7.27189874649048 0.219482004642487 0.0952147990465164 0.030273400247097 0.149657994508743 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23G3.06 /DEF=ribonucleoprotein (RNP) complex (predicted) (PMID 12068309) --- --- --- --- --- --- SPAC23G3.06 // |||ribonucleoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.26290011204098 1.58103896601646 1.16977961302333 1.76120082353842 -1.05048183714958 Max fold change at or above threshold 4 5.26290011204098 Max fold change at or above threshold AAAPPA No 4 0 AAPA 3 1 0 No No x = 1
1778576_at SPCC11E10.04.S1 --- 5.26020937112946 --- --- --- --- 1.05015432834625 5.52403163909912 4.07832050323486 1.52645325660706 0.390625 0.633789002895355 0.334473013877869 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC11E10.04 /DEF=sequence orphan --- --- --- --- --- --- SPCC11E10.04 // |||ATPase expression protein homolog|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.50419100881572 5.26020937112946 3.57499097831811 3.8835439641117 1.45355136421793 Max fold change at or above threshold 2 5.26020937112946 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769357_at SPBC21B10.08c.S1 --- 5.2501854543882 --- --- --- --- 5.26805782318115 1.62056052684784 1.15165913105011 3.82458257675171 0.5 0.633789002895355 0.696289002895355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21B10.08c /DEF=hypothetical protein --- --- --- --- --- --- D89181 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1012. // gb // 11 // --- /// SPBC21B10.08c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.2501854543882 -3.25076276751482 -2.97496605913637 -4.57432037062704 -1.37742033737324 Max fold change at or above threshold 2 5.2501854543882 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772851_at SPAPJ760.02c.S1 --- 5.25002231674529 --- --- --- --- 9.32463932037354 1.97411704063416 8.06386375427246 5.53629541397095 0.149657994508743 0.725830018520355 0.171387001872063 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPJ760.02c /GEN=app1 /DEF=actin-binding protein --- --- --- --- --- --- D89164 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0662. // gb // 10 // --- /// SPAPJ760.02c // |app1||App1 protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.0987197019342 -4.72344806738416 -5.25002231674529 -1.15634881795133 -1.68427416225706 Max fold change at or above threshold 3 5.25002231674529 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774919_at SPBC839.05c.S1 --- 5.24643058725148 --- --- --- --- 2.13145875930786 11.1825504302979 3.27244305610657 4.81822109222412 0.665526986122131 0.274170011281967 0.696289002895355 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC839.05c /GEN=rps1701 /DEF=40S ribosomal protein S17 --- --- --- --- --- --- SPBC839.05c // |rps1701|rps17-1|40S ribosomal protein S17|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.10168331226749 5.24643058725148 -1.24592761163177 1.53530676669963 2.26052747733609 Max fold change at or above threshold 3 5.24643058725148 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779882_at SPAC3G9.08.S1 --- 5.24425019694243 --- --- --- --- 0.748302340507507 3.92428469657898 1.13014042377472 0.214606866240501 0.969726979732513 0.633789002895355 0.969726979732513 0.995850026607513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G9.08 /GEN=png1 /DEF=zinc finger protein --- --- --- --- --- --- SPAC3G9.08 // |png1||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.58839166732381 5.24425019694243 1.11875592918197 1.51027246955855 -3.48685181241552 Max fold change at or above threshold 1 5.24425019694243 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773627_at YPL030W.S1 Hypothetical protein 5.24373345614902 162.197288513184 770.406616210938 --- --- 5737 // cytoplasm // inferred from direct assay --- 735.226623535156 140.210525512695 184.184051513672 805.586608886719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL030W /GEN=PHO85 /DB_XREF=GI:6325227 /SEG=NC_001148:+493539,495242 /DEF=Hypothetical ORF /NOTE=Ypl030wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005951 // YPL030W SGDID:S0005951, Chr XVI from 493541-495244, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017164 // cdna:Genscan chromosome:SGD1:XVI:493541:495244:1 // ensembl // 11 // --- /// GENEFINDER00000020768 // cdna:GeneFinder chromosome:SGD1:XVI:493541:495244:1 // ensembl // 11 // --- /// YPL030W // cdna:known chromosome:SGD1:XVI:493541:495244:1 gene:YPL030W // ensembl // 11 // --- --- No cerevisiae_gene -1.11881008890888 -5.24373345614902 -1.35132242997574 -3.99180394552555 1.09569836442164 Max fold change at or above threshold 4 5.24373345614902 Max fold change at or above threshold 0.762301862670287 -0.924348446736901 -0.799699783479269 0.961746367545882 466.301952362061 352.779763952134 0.756547902416281 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774532_at SPAC7D4.10.S1 --- 5.23964901179127 --- --- --- --- 0.950411856174469 1.87503433227539 3.57055521011353 0.508836090564728 0.601073980331421 0.567627012729645 0.366210997104645 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC7D4.10 /GEN=vma13 /DEF=vacuolar ATP synthase (subunit H) (predicted) --- --- --- --- --- --- SPAC7D4.10 // |vma13||vacuolar ATP synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.79289732114446 1.97286504802523 5.23964901179127 3.75685045058831 -1.86781534132074 Max fold change at or above threshold 1 5.23964901179127 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772502_at SPCC645.09.S1 --- 5.23843022738405 --- --- --- --- 5.62759590148926 1.10464942455292 1.90928912162781 3.38803720474243 0.303710997104645 0.601073980331421 0.274170011281967 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC645.09 /GEN=mrpl37 /DEF=mitochondrial ribosomal protein subunit YmL37 --- --- --- --- --- --- SPCC645.09 // |mrpl37||mitochondrial ribosomal protein subunit L37|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.20141148944427 -5.0944632535946 -5.23843022738405 -2.94748230518976 -1.66101951112343 Max fold change at or above threshold 2 5.23843022738405 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769370_at SPAC17A5.12.S1 --- 5.23725940388833 --- --- --- --- 1.61032378673553 5.65270519256592 1.22569406032562 8.43368339538574 0.633789002895355 0.334473013877869 0.432372987270355 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A5.12 /GEN=ucp7 /DEF=UBA domain --- --- --- --- --- --- SPAC17A5.12 // |ucp7||UBA domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.21726485776359 3.51029106017563 2.55551507860864 -1.31380565416767 5.23725940388833 Max fold change at or above threshold 2 5.23725940388833 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771205_at SPBC12C2.10c.S1 --- 5.23561541576092 --- --- --- --- 4.27992677688599 1.03372395038605 4.96667289733887 0.817463934421539 0.533936023712158 0.904784977436066 0.753906011581421 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12C2.10c /GEN=pst1 /DEF=SIN3 family co-repressor --- --- --- --- --- --- SPBC12C2.10c // |pst1|SPBC21D10.01c|SIN3 family co-repressor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.13619665156026 -4.14029952124804 -1.03859855578833 1.16045744617915 -5.23561541576092 Max fold change at or above threshold 2 5.23561541576092 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773897_at SPCC736.06.S1 --- 5.23539231216664 --- --- --- --- 3.73554396629334 4.76309299468994 0.713517487049103 1.22917282581329 0.194580003619194 0.601073980331421 0.696289002895355 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC736.06 /DEF=aspartate-tRNA ligase (predicted) --- --- --- --- --- --- SPCC736.06 // |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -4.32643530731918 1.27507346658704 -2.42862988785185 -5.23539231216664 -3.03907138837183 Max fold change at or above threshold 2 5.23539231216664 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772726_at YHL035C.S1 Protein of unknown function, member of the ATP-binding cassette (ABC) family, potential Cdc28p substrate 5.23329575779464 136.258583068848 765.916534423828 --- 6810 // transport // inferred from sequence similarity 5739 // mitochondrion // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from sequence similarity 700.450317382813 133.844970703125 138.67219543457 831.382751464844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL035C /GEN=MUP3 /DB_XREF=GI:6321752 /SEG=NC_001140:-27976,32754 /DEF=Protein of unknown function, member of the ATP-binding cassette (ABC) family, potential Cdc28p substrate /NOTE=Yhl035cp --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 0.389999985694885 S0001027 // span:28-47,170-189,193-212,336-358,378-400,465-487,491-513,569-591,980-1002,1036-1058,1114-1136,1141-1163,1224-1246,1253-1275 // numtm:14 S0001027 // VMR1 SGDID:S0001027, Chr VIII from 32754-27976, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016521 // cdna:Genscan chromosome:SGD1:VIII:27976:30819:-1 // ensembl // 11 // --- /// YHL035C // cdna:known chromosome:SGD1:VIII:27976:32754:-1 gene:YHL035C // ensembl // 11 // --- --- No cerevisiae_gene -1.60895025685533 -5.23329575779464 1.21052732015833 -5.05112301126945 1.1869260828823 Max fold change at or above threshold 4 5.23329575779464 Max fold change at or above threshold 0.678635533937901 -0.863369070432863 -0.850231879254134 1.0349654157491 451.087558746338 367.447246962598 0.814580761180395 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772534_s_at YAR066W.S1 putative membrane protein /// Hypothetical protein 5.23235590357532 7.19748473167419 5.54404401779175 --- --- --- --- 1.7791166305542 7.81568574905396 6.57928371429443 9.3089714050293 0.466064006090164 0.111571997404099 0.030273400247097 0.0283203125 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR066W /GEN=FLO1 /DB_XREF=GI:6319347 /SEG=NC_001133:+221042,221653 /DEF=Hypothetical ORF /NOTE=Yar066wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.139.1.Type I dockerin domain // All alpha proteins; Type I dockerin domain; Type I dockerin domain; Type I dockerin domain // 3.90000009536743 --- S0002144 // YAR066W SGDID:S0002144, Chr I from 221040-221651, Uncharacterized ORF // sgd // 11 // --- /// S0001257 // YHR214W SGDID:S0001257, Chr VIII from 541650-542261, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018220 // cdna:GeneFinder chromosome:SGD1:I:221040:222962:1 // ensembl // 9 // --- /// GENSCAN00000020399 // cdna:Genscan chromosome:SGD1:I:221040:221651:1 // ensembl // 11 // --- /// GENSCAN00000016735 // cdna:Genscan chromosome:SGD1:VIII:541650:542261:1 // ensembl // 11 // --- /// GENEFINDER00000020160 // cdna:GeneFinder chromosome:SGD1:VIII:541650:543572:1 // ensembl // 9 // --- /// YAR066W // cdna:known chromosome:SGD1:I:221040:221651:1 gene:YAR066W // ensembl // 11 // --- /// YHR214W // cdna:known chromosome:SGD1:VIII:541650:542261:1 gene:YHR214W // ensembl // 11 // --- --- No cerevisiae_gene 2.78463436036448 4.39301483378262 1.90275437822527 3.69806206142032 5.23235590357532 Max fold change at or above threshold 3 5.23235590357532 Max fold change at or above threshold -1.40925977534717 0.443472514622113 0.0639983583232132 0.901788902401843 6.37076437473297 3.25819825734232 0.511429722666346 AAAAPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1773368_at SPCC16C4.08c.S1 --- 5.2306001563356 --- --- --- --- 0.78707492351532 3.415283203125 4.11687421798706 0.683719515800476 0.991943001747131 0.828612983226776 0.633789002895355 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16C4.08c /GEN=skb15 /DEF=interacts physically with Shk1p (PMID 11389855) --- --- --- --- --- --- SPCC16C4.08c // |skb15||Shk1 kinase-binding protein 15|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.87416211192702 4.33920977671514 -2.24259455633232 5.2306001563356 -1.15116638523012 Max fold change at or above threshold 2 5.2306001563356 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780167_at SPAC9E9.15.S1 --- 5.22864721923164 --- --- --- --- 1.04016518592834 1.00974106788635 1.22150981426239 5.4386568069458 0.805419981479645 0.7998046875 0.665526986122131 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9E9.15 /DEF=sequence orphan --- --- --- --- --- --- SPAC9E9.15 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.43749786344975 -1.03013061368859 -2.27961838536682 1.17434214371652 5.22864721923164 Max fold change at or above threshold 1 5.22864721923164 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777019_at YOR204W.S1 ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase, required for translation initiation of all yeast mRNAs; mutations in human DEAD-box DBY are a frequent cause of male infertility 5.22662448967349 2575.880859375 609.783569335938 DED1 6413 // translational initiation // inferred from mutant phenotype 5737 // cytoplasm // inferred from curator 3724 // RNA helicase activity // inferred from direct assay 557.546264648438 2237.6767578125 2914.0849609375 662.020874023438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR204W /GEN=DED1 /DB_XREF=GI:6324778 /SEG=NC_001147:+722911,724725 /DEF=ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase, required for translation initiation of all yeast mRNAs /NOTE=Ded1p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 9045610]; go_function: RNA helicase activity [goid GO:0003724] [evidence IDA] [pmid 10364207]; go_process: translational initiation [goid GO:0006413] [evidence IMP] [pmid 9045610] --- --- --- --- --- --- S0005730 // DED1 SGDID:S0005730, Chr XV from 722911-724725, Verified ORF // sgd // 11 // --- /// GENSCAN00000017620 // cdna:Genscan chromosome:SGD1:XV:722911:724725:1 // ensembl // 11 // --- /// GENEFINDER00000022784 // cdna:GeneFinder chromosome:SGD1:XV:722911:724725:1 // ensembl // 11 // --- /// YOR204W // cdna:known chromosome:SGD1:XV:722911:724725:1 gene:YOR204W // ensembl // 11 // --- --- No cerevisiae_gene 5.07972270553676 4.01343691043016 1.41729442820989 5.22662448967349 1.18738285232863 Max fold change at or above threshold 4 5.22662448967349 Max fold change at or above threshold -0.885608400872471 0.551615469237196 1.130231249038 -0.796238317402728 1592.83221435547 1169.01098576651 0.733919728161415 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770242_at SPBC776.05.S1 --- 5.22450420937485 --- --- --- --- 4.14547443389893 21.6580486297607 15.1731576919556 3.33535361289978 0.219482004642487 0.018554700538516 0.0375977009534836 0.567627012729645 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC776.05 /DEF=transporter (predicted) --- --- --- --- --- --- SPBC776.05 // |||membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 2.01535251429485 5.22450420937485 1.69318298674096 3.66017398826045 -1.24288903517334 Max fold change at or above threshold 4 5.22450420937485 Max fold change at or above threshold AAPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1771665_at SPCC965.13.S1 --- 5.22329612302931 --- --- --- --- 7.02563667297363 1.3885555267334 1.90551459789276 6.21826887130737 0.398925989866257 0.805419981479645 0.805419981479645 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC965.13 /DEF=transporter --- --- --- --- --- --- SPCC965.13 // |||membrane transporter |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.83789322296302 -5.05967283101855 -5.22329612302931 -3.68700228313288 -1.12983803344234 Max fold change at or above threshold 2 5.22329612302931 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778234_at SPCC285.05.S1 --- 5.22312216045238 --- --- --- --- 1.17143070697784 0.97470635175705 0.810670912265778 0.507844805717468 0.828612983226776 0.753906011581421 0.919434010982513 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC285.05 /DEF=conserved protein --- --- --- --- --- --- SPCC285.05 // |||conserved protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.22312216045238 -1.20182935595543 -1.43273248760861 -1.44501386352171 -2.30667064778359 Max fold change at or above threshold 0 5.22312216045238 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771605_at SPAC630.10.S1 --- 5.22273904717074 --- --- --- --- 16.0198535919189 14.8450031280518 12.7323122024536 5.03218221664429 0.0461426004767418 0.018554700538516 0.171387001872063 0.0676269978284836 P P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC630.10 /DEF=conserved fungal protein --- --- --- --- --- --- SPAC630.10 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.39173222589298 -1.07914113952911 -5.22273904717074 -1.25820458508956 -3.18348042702671 Max fold change at or above threshold 4 5.22273904717074 Max fold change at or above threshold PMPAAA No 4 0 PPAA 2 2 0 No No 1 < x = 2
1776119_at SPCC162.06c.S1 --- 5.2191990089248 --- --- --- --- 1.33446538448334 6.96484041213989 5.99871921539307 0.957764863967896 0.725830018520355 0.0952147990465164 0.398925989866257 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC162.06c /DEF=involved in intracellular protein transport --- --- --- --- --- --- SPCC162.06c // |||SNF7 family class E vps |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.94434753184554 5.2191990089248 4.57553433187066 4.49522279494389 -1.39331211102777 Max fold change at or above threshold 2 5.2191990089248 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773033_at SPAC144.11.S1 --- 5.21567441949202 --- --- --- --- 10.9500532150269 12.3900136947632 17.5799674987793 12.3100414276123 0.5 0.533936023712158 0.432372987270355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC144.11 /GEN=rps1102 /DEF=40S ribosomal protein S11 --- --- --- --- --- --- SPAC144.11 // |rps1102|rps11-2, rps11|40S ribosomal protein S11|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -5.21567441949202 1.13150260107962 1.30381851953364 1.60546868161829 1.1241992331799 Max fold change at or above threshold 4 5.21567441949202 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776363_at YLR372W.S1 Elongase, involved in fatty acid and sphingolipid biosynthesis; synthesizes very long chain 20-26-carbon fatty acids from C18-CoA primers; involved in regulation of sphingolipid biosynthesis 5.21066367347311 243.530784606934 353.12841796875 SUR4 6633 // fatty acid biosynthesis // inferred from mutant phenotype /// 6892 // post-Golgi transport // inferred from genetic interaction /// 30148 // sphingolipid biosynthesis // inferred from mutant phenotype /// 30497 // fatty acid elongation // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // traceable author statement 9922 // fatty acid elongase activity // inferred from mutant phenotype /// 9922 // fatty acid elongase activity // traceable author statement 347.576782226563 229.51969909668 257.541870117188 358.680053710938 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR372W /GEN=SUR4 /DB_XREF=GI:6323404 /SEG=NC_001144:+867353,868390 /DEF=Elongase III synthesizes 20-26-carbon fatty acids from C18-CoA primers /NOTE=Sur4p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 12087109]; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence TAS] [pmid 9988704]; go_function: fatty acid elongase activity [goid GO:0009922] [evidence IMP,TAS] [pmid 12684876]; go_process: fatty acid biosynthesis [goid GO:0006633] [evidence IMP] [pmid 9211877]; go_process: fatty acid elongation [goid GO:0030497] [evidence IMP] [pmid 9211877]; go_process: post-Golgi transport [goid GO:0006892] [evidence IGI] [pmid 9832547]; go_process: sphingolipid biosynthesis [goid GO:0030148] [evidence IMP] [pmid 9211877] --- --- --- --- --- S0004364 // span:73-95,110-127,181-203,208-227,240-262,282-304 // numtm:6 S0004364 // SUR4 SGDID:S0004364, Chr XII from 867353-868390, Verified ORF // sgd // 11 // --- /// YLR372W // cdna:known chromosome:SGD1:XII:867353:868390:1 gene:YLR372W // ensembl // 11 // --- --- No cerevisiae_gene 5.21066367347311 -1.51436579777039 -1.09522732509186 -1.34959329940567 1.0319448019895 Max fold change at or above threshold 4 5.21066367347311 Max fold change at or above threshold 0.763976712479259 -1.06745527073796 -0.632744375927191 0.936222934185892 298.329601287842 64.461625772471 0.216075191647763 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770484_at SPBC211.08c.S1 --- 5.20995165236487 --- --- --- --- 4.38081359863281 0.840854942798615 3.82930898666382 0.844221115112305 0.334473013877869 0.665526986122131 0.5 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC211.08c /DEF=ribonuclease PH-like --- --- --- --- --- --- SPBC211.08c // |||ribonuclease PH-like|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.68814800392611 -5.20995165236487 -1.0803750771866 -1.14402196685869 -5.18917795375213 Max fold change at or above threshold 2 5.20995165236487 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776832_at SPBC19C2.01.S1 --- 5.20910617021329 --- --- --- --- 0.561739385128021 0.538740694522858 0.918881416320801 0.600090086460114 0.718505859375 0.870360970497131 0.828612983226776 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C2.01 /GEN=cdc28 /DEF=RNA helicase (PMID 8862522) --- --- --- --- --- --- SPBC19C2.01 // |cdc28|prp8|ATP-dependent RNA helicase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.02684481052949 -1.04268972223369 5.20910617021329 1.63577886943317 1.0682713413861 Max fold change at or above threshold 0 5.20910617021329 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772349_at YNL182C.S1 Protein required for cell viability; computational analysis of large-scale protein-protein interaction data suggests a possible role in assembly of the ribosomal large subunit 5.20101760470321 40.7424201965332 200.168281555176 IPI3 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 27 // ribosomal large subunit assembly and maintenance // RCA /// 6365 // 35S primary transcript processing // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5654 // nucleoplasm // inferred from direct assay --- 190.228988647461 36.5753402709961 44.9095001220703 210.107574462891 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL182C /GEN=IPI3 /DB_XREF=GI:6324147 /SEG=NC_001146:-295960,297627 /DEF=Protein required for cell viability; computational analysis of large-scale protein-protein interaction data suggests a possible role in assembly of the ribosomal large subunit /NOTE=Ipi3p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0005126 // IPI3 SGDID:S0005126, Chr XIV from 297627-295960, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019895 // cdna:Genscan chromosome:SGD1:XIV:295960:297627:-1 // ensembl // 11 // --- /// GENEFINDER00000020410 // cdna:GeneFinder chromosome:SGD1:XIV:295960:297627:-1 // ensembl // 11 // --- /// YNL182C // cdna:known chromosome:SGD1:XIV:295960:297627:-1 gene:YNL182C // ensembl // 11 // --- --- No cerevisiae_gene 1.07062050252161 -5.20101760470321 -1.37361738595431 -4.23582957125757 1.10449819429083 Max fold change at or above threshold 4 5.20101760470321 Max fold change at or above threshold 0.754601227724291 -0.907161515515968 -0.81702765613118 0.969587943922857 120.455350875854 92.46425159157 0.767622616340779 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Sc-25SrRNA-5_at AFFX-r2-Sc-25SrRNA-5 Identified by fungal homology and RT-PCR 5.1992739013055 704.484146118164 283.142395019531 --- --- --- --- 474.937835693359 1063.72741699219 345.240875244141 91.3469543457031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=Z73326 SGD:YLR154C 25S ribosomal RNA corresponds to complement of 4212-7605 in Z73326 (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- L10643 // Saccharomyces cerevisiae 25S ribosomal RNA, partial. // gb // 0 // chr12:463694-463982(-) /// M19229 // Yeast (S.cerevisiae) 28S large subunit rRNA, 5' end. // gb // 0 // chr12:463950-464317(-) /// YLR154C-G // cdna:known chromosome:SGD1:XII:462523:462672:-1 gene:YLR154C-G // ensembl // 0 // chr12:462522-462672(-) /// D83562 // Saccharomyces cerevisiae 26S ribosomal rRNA, partial sequence. // gb // 0 // chr12:462482-462707(-) /// D83572 // Saccharomyces cerevisiae 26S ribosomal RNA, partial sequence. // gb // 0 // chr12:463696-463826(-) /// L11088 // Saccharomyces cerevisiae 25S ribosomal RNA sequence. // gb // 0 // chr12:463700-463969(-) /// L10682 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 25S ribosomal RNA, partial. // gb // 0 // chr12:462486-462734(-) /// L19652 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:462493-462760(-) /// D23716 // Saccharomyces cerevisiae 26S ribosomal RNA, partial sequence. // gb // 0 // chr12:463696-463826(-) /// D25212 // Yeast (strain IFO 2376) 26S rRNA, partial sequence. // gb // 0 // chr12:462482-462707(-) /// L21852 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:462492-462773(-) /// S0028561 // YLR154C-G SGDID:S0028561, Chr XII from 462672-462523, reverse complement, Uncharacterized ORF // sgd // 0 // chr12:462522-462672(-) /// L20827 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:463694-464013(-) /// L20827 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:454557-454876(-) /// M19229 // Yeast (S.cerevisiae) 28S large subunit rRNA, 5' end. // gb // 0 // chr12:454813-455180(-) /// L10643 // Saccharomyces cerevisiae 25S ribosomal RNA, partial. // gb // 0 // chr12:454557-454845(-) /// YLR154C-G // cdna:known chromosome:SGD1:XII:462523:462672:-1 gene:YLR154C-G // ensembl // 0 // chr12:453385-453535(-) /// D83562 // Saccharomyces cerevisiae 26S ribosomal rRNA, partial sequence. // gb // 0 // chr12:453345-453570(-) /// D83572 // Saccharomyces cerevisiae 26S ribosomal RNA, partial sequence. // gb // 0 // chr12:454559-454689(-) /// L11088 // Saccharomyces cerevisiae 25S ribosomal RNA sequence. // gb // 0 // chr12:454563-454832(-) /// L10682 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 25S ribosomal RNA, partial. // gb // 0 // chr12:453349-453597(-) /// L19652 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:453356-453623(-) /// D23716 // Saccharomyces cerevisiae 26S ribosomal RNA, partial sequence. // gb // 0 // chr12:454559-454689(-) /// D25212 // Yeast (strain IFO 2376) 26S rRNA, partial sequence. // gb // 0 // chr12:453345-453570(-) /// L21852 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:453355-453636(-) /// S0028561 // YLR154C-G SGDID:S0028561, Chr XII from 462672-462523, reverse complement, Uncharacterized ORF // sgd // 0 // chr12:453385-453535(-) S0028422 // sgd // 5 // Negative Strand Matching Probes /// YLR154W-A // ensembl // 5 // Negative Strand Matching Probes AFFX_control cerevisiae_gene -2.04323470655641 2.23971925807776 1.48663473189176 -1.37567092934028 -5.1992739013055 Max fold change at or above threshold 4 5.1992739013055 Max fold change at or above threshold -0.0458150931171851 1.3833148671501 -0.360619936512515 -0.976879837520398 493.813270568848 411.991629640673 0.834306516643588 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 No No 3 < x
1776506_at SPCC18.03.S1 --- 5.19634817290612 --- --- --- --- 1.31295728683472 6.82258319854736 4.1816086769104 0.431742668151855 0.870360970497131 0.466064006090164 0.366210997104645 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18.03 /DEF=shuttle craft like transcriptional regulator --- --- --- --- --- --- SPCC18.03 // |||shuttle craft like transcriptional regulator|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.0005482171412 5.19634817290612 -1.06257128945358 3.18487792317406 -3.04106446660703 Max fold change at or above threshold 2 5.19634817290612 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775042_at SPBC30D10.02.S1 --- 5.19537378945386 --- --- --- --- 0.763610780239105 3.96724343299866 1.1752222776413 1.11043322086334 0.725830018520355 0.753906011581421 0.850341975688934 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30D10.02 /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPBC30D10.02 // |||transcriptional regulator |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.32451927326729 5.19537378945386 1.05130485573515 1.5390331148459 1.45418745989369 Max fold change at or above threshold 1 5.19537378945386 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773601_at SPBC25H2.11c.S1 --- 5.19527718393164 --- --- --- --- 1.6203705072403 8.41827392578125 0.666511416435242 3.12264776229858 0.432372987270355 0.194580003619194 0.633789002895355 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25H2.11c /DEF=bromodomain protein --- --- --- --- --- --- SPBC25H2.11c // |||bromodomain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.89533169131883 5.19527718393164 3.72375517862481 -2.43112190921899 1.92711959909519 Max fold change at or above threshold 2 5.19527718393164 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770982_at SPBC800.06.S1 --- 5.19494738002369 --- --- --- --- 2.16869354248047 0.990077376365662 0.541356980800629 0.417462080717087 0.753906011581421 0.888427972793579 0.994140982627869 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC800.06 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC800.06 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -3.94483957078073 -2.19042833848121 1.24888546375613 -4.00603228441448 -5.19494738002369 Max fold change at or above threshold 0 5.19494738002369 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775081_at SPAC19A8.01c.S1 --- 5.19301495780308 --- --- --- --- 6.09366846084595 5.38055229187012 4.20383787155151 1.17343556880951 0.129638999700546 0.303710997104645 0.398925989866257 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19A8.01c /GEN=sec73 /DEF=Sec7 domain --- --- --- --- --- --- SPAC19A8.01c // |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange factor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.72451045855975 -1.13253586812144 -2.5055343662425 -1.44954887582212 -5.19301495780308 Max fold change at or above threshold 3 5.19301495780308 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777906_at SPAC7D4.03c.S1 --- 5.19247250254046 --- --- --- --- 2.15054512023926 2.40368938446045 4.89165067672729 5.716468334198 0.533936023712158 0.725830018520355 0.665526986122131 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC7D4.03c /DEF=sequence orphan --- --- --- --- --- --- SPAC7D4.03c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.19247250254046 1.11771167311897 -1.25960153896931 2.27460964696387 2.65814852262296 Max fold change at or above threshold 2 5.19247250254046 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772997_at YOL151W.S1 NADPH-dependent methylglyoxal reductase (D-lactaldehyde dehydrogenase); stress induced (osmotic, ionic, oxidative, heat shock and heavy metals); regulated by the HOG pathway 5.1908981539256 1512.85583496094 5128.08032226563 GRE2 6950 // response to stress // inferred from expression pattern 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 16491 // oxidoreductase activity // inferred from direct assay /// 19170 // D-lactaldehyde dehydrogenase activity // inferred from direct assay 5720.4755859375 1923.69128417969 1102.02038574219 4535.68505859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL151W /GEN=GRE2 /DB_XREF=GI:6324421 /SEG=NC_001147:+43692,44720 /DEF=NADPH-dependent methylglyoxal reductase (D-lactaldehyde dehydrogenase); stress induced (osmotic, ionic, oxidative, heat shock and heavy metals); regulated by the HOG pathway /NOTE=Gre2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12206772]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12206772]; go_function: D-lactaldehyde dehydrogenase activity [goid GO:0019170] [evidence IDA] [pmid 12722185]; go_function: oxidoreductase activity [goid GO:0016491] [evidence IDA] [pmid 11456752]; go_process: response to stress [goid GO:0006950] [evidence IEP] [pmid 10407268] --- --- --- --- --- --- S0005511 // GRE2 SGDID:S0005511, Chr XV from 43692-44720, Verified ORF // sgd // 11 // --- /// GENSCAN00000017350 // cdna:Genscan chromosome:SGD1:XV:43692:44720:1 // ensembl // 11 // --- /// GENEFINDER00000022830 // cdna:GeneFinder chromosome:SGD1:XV:43692:44720:1 // ensembl // 11 // --- /// YOL151W // cdna:known chromosome:SGD1:XV:43692:44720:1 gene:YOL151W // ensembl // 11 // --- YOL150C // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene -2.36700646426973 -2.97369730423084 -1.39448414115893 -5.1908981539256 -1.26121534278464 Max fold change at or above threshold 4 5.1908981539256 Max fold change at or above threshold 1.10667663555048 -0.644073086755529 -1.02295689550926 0.560353346714312 3320.46807861328 2168.66194715534 0.653119348179679 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774311_at SPAC16C9.06c.S1 --- 5.19007958425116 --- --- --- --- 5.01573419570923 3.43218779563904 2.8230357170105 0.966407954692841 0.24609400331974 0.533936023712158 0.466064006090164 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16C9.06c /DEF=involved in mRNA catabolism, nonsense-mediated --- --- --- --- --- --- SPAC16C9.06c // |||ATP-dependent RNA helicase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.51483253181974 -1.46138104741304 -1.32467378729383 -1.77671652026448 -5.19007958425116 Max fold change at or above threshold 3 5.19007958425116 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769354_at SPCC1183.09c.S1 --- 5.1897246886979 --- --- --- --- 1.20519804954529 1.77466356754303 6.11871433258057 2.40517950057983 0.904784977436066 0.725830018520355 0.432372987270355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1183.09c /DEF=UPF0057 family --- --- --- --- --- --- SPCC1183.09c // |||UPF0057 family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -5.1897246886979 1.47250783239535 -3.72171855065173 5.07693680295044 1.99567158400836 Max fold change at or above threshold 1 5.1897246886979 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777566_s_at YLR155C.S1 Cell-wall L-asparaginase II, involved in asparagine catabolism; expression is induced during nitrogen starvation; four copies of ASP3 are present in the genome reference strain S288C /// Cell-wall L-asparaginase II, involved in asparagine catabolism; expression is induced during nitrogen starvation; four copies of ASP3 are present in the genome reference strain S288C /// Cell-wall L-asparaginase II, involved in asparagine catabolism; expression is induced during nitrogen starvation; four copies of ASP3 are present in the genome reference strain S288C /// Cell-wall L-asparaginase II, involved in asparagine catabolism; expression is induced during nitrogen starvation; four copies of ASP3 are present in the genome reference strain S288C 5.18878688072997 1022.5417175293 717.0283203125 ASP3-4 /// ASP3-3 /// ASP3-2 /// ASP3-1 6530 // asparagine catabolism // traceable author statement /// 6995 // cellular response to nitrogen starvation // traceable author statement 30287 // periplasmic space (sensu Fungi) // traceable author statement /// 5635 // nuclear membrane // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay 4067 // asparaginase activity // traceable author statement 669.101257324219 777.994934082031 1267.08850097656 764.955383300781 0.00122069998178631 0.00195312988944352 0.00122069998178631 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR155C /GEN=ASP3-1 /DB_XREF=GI:6323184 /SEG=NC_001144:-469318,470406 /DEF=Cell-wall L-asparaginase II, involved in asparagine catabolism; expression is induced during nitrogen starvation; four copies of ASP3 are present in the genome reference strain S288C /NOTE=Asp3-1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11914276]; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 11914276]; go_component: periplasmic space (sensu Fungi) [goid GO:0030287] [evidence TAS] [pmid 9170245]; go_function: asparaginase activity [goid GO:0004067] [evidence TAS] [pmid 3042786]; go_process: asparagine catabolism [goid GO:0006530] [evidence TAS]; go_process: cellular response to nitrogen starvation [goid GO:0006995] [evidence TAS] [pmid 9170245] --- --- --- --- --- --- S0004145 // ASP3-1 SGDID:S0004145, Chr XII from 470406-469318, reverse complement, Verified ORF // sgd // 11 // --- /// S0004147 // ASP3-2 SGDID:S0004147, Chr XII from 474058-472970, reverse complement, Verified ORF // sgd // 11 // --- /// S0004148 // ASP3-3 SGDID:S0004148, Chr XII from 483638-482550, reverse complement, Verified ORF // sgd // 11 // --- /// S0004150 // ASP3-4 SGDID:S0004150, Chr XII from 487290-486202, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017942 // cdna:Genscan chromosome:SGD1:XII:469318:470364:-1 // ensembl // 11 // --- /// GENEFINDER00000024807 // cdna:GeneFinder chromosome:SGD1:XII:469318:470364:-1 // ensembl // 11 // --- /// GENSCAN00000017943 // cdna:Genscan chromosome:SGD1:XII:472970:474016:-1 // ensembl // 11 // --- /// GENEFINDER00000024666 // cdna:GeneFinder chromosome:SGD1:XII:472970:474016:-1 // ensembl // 11 // --- /// GENSCAN00000017946 // cdna:Genscan chromosome:SGD1:XII:482550:483596:-1 // ensembl // 11 // --- /// GENEFINDER00000024727 // cdna:GeneFinder chromosome:SGD1:XII:482550:483596:-1 // ensembl // 11 // --- /// GENSCAN00000017947 // cdna:Genscan chromosome:SGD1:XII:486202:487248:-1 // ensembl // 11 // --- /// GENEFINDER00000024730 // cdna:GeneFinder chromosome:SGD1:XII:486202:487248:-1 // ensembl // 11 // --- /// YLR155C // cdna:known chromosome:SGD1:XII:469318:470406:-1 gene:YLR155C // ensembl // 11 // --- /// YLR157C // cdna:known chromosome:SGD1:XII:472970:474058:-1 gene:YLR157C // ensembl // 11 // --- /// YLR158C // cdna:known chromosome:SGD1:XII:482550:483638:-1 gene:YLR158C // ensembl // 11 // --- /// YLR160C // cdna:known chromosome:SGD1:XII:486202:487290:-1 gene:YLR160C // ensembl // 11 // --- --- No cerevisiae_gene -5.18878688072997 1.16274618462576 1.80257649790583 1.89371711247971 1.14325802698367 Max fold change at or above threshold 4 5.18878688072997 Max fold change at or above threshold -0.745254478468031 -0.340869491686158 1.47541682972832 -0.389292859574129 869.785018920898 269.282194733283 0.309596266750339 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777861_at SPCC16A11.08.S1 --- 5.18447658029918 --- --- --- --- 0.985546886920929 2.6164116859436 1.69132685661316 0.403123468160629 0.696289002895355 0.533936023712158 0.466064006090164 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16A11.08 /DEF=PX domain --- --- --- --- --- --- SPCC16A11.08 // |||PX domain protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 5.18447658029918 2.65478154379632 1.3193155281068 1.716130281632 -2.44477676136738 Max fold change at or above threshold 1 5.18447658029918 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774000_s_at YDL245C.S1 Protein of unknown function with similarity to hexose transporter family members, expression is repressed by high levels of glucose /// Protein of unknown function with similarity to hexose transporter family members, expression is induced by low levels of glucose and repressed by high levels of glucose 5.18254047972123 1.40281683206558 0.566017746925354 HXT16 /// HXT15 8645 // hexose transport // inferred from genetic interaction 5886 // plasma membrane // inferred from sequence similarity 5353 // fructose transporter activity // inferred from genetic interaction /// 5355 // glucose transporter activity // inferred from genetic interaction /// 15578 // mannose transporter activity // inferred from genetic interaction 0.341208755970001 1.76832818984985 1.03730547428131 0.790826737880707 0.976073980331421 0.696289002895355 0.753906011581421 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL245C /GEN=HXT15 /DB_XREF=GI:6319956 /SEG=NC_001136:-11657,13360 /DEF=Protein of unknown function with similarity to hexose transporter family members, expression is induced by low levels of glucose and repressed by high levels of glucose /NOTE=Hxt15p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 8929273]; go_function: fructose transporter activity [goid GO:0005353] [evidence IGI] [pmid 10618490]; go_function: glucose transporter activity [goid GO:0005355] [evidence IGI] [pmid 10618490]; go_function: mannose transporter activity [goid GO:0015578] [evidence IGI] [pmid 10618490]; go_process: hexose transport [goid GO:0008645] [evidence IGI] [pmid 10618490] --- --- --- --- --- S0002404 // span:54-76,111-133,140-157,172-191,198-220,230-252,321-343,358-377,386-405,425-447,460-482,486-508 // numtm:12 /// S0003919 // span:54-76,111-133,140-157,172-191,198-220,230-252,321-343,358-377,386-405,425-447,460-482,486-508 // numtm:12 S0002404 // HXT15 SGDID:S0002404, Chr IV from 13360-11657, reverse complement, Verified ORF // sgd // 11 // --- /// S0003919 // HXT16 SGDID:S0003919, Chr X from 732355-734058, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023851 // cdna:GeneFinder chromosome:SGD1:IV:11657:13102:-1 // ensembl // 11 // --- /// GENSCAN00000024919 // cdna:Genscan chromosome:SGD1:IV:11657:13102:-1 // ensembl // 11 // --- /// GENSCAN00000024260 // cdna:Genscan chromosome:SGD1:X:732613:734058:1 // ensembl // 11 // --- /// GENEFINDER00000024517 // cdna:GeneFinder chromosome:SGD1:X:732613:734058:1 // ensembl // 11 // --- /// YDL245C // cdna:known chromosome:SGD1:IV:11657:13360:-1 gene:YDL245C // ensembl // 11 // --- /// YJR158W // cdna:known chromosome:SGD1:X:732355:734058:1 gene:YJR158W // ensembl // 11 // --- --- No cerevisiae_gene -1.90615047563583 5.18254047972123 -1.41179004981683 3.04009043183086 2.31772111366988 Max fold change at or above threshold 0 5.18254047972123 Max fold change at or above threshold -1.07776367041815 1.31352531132625 0.0886197262404424 -0.324381367148541 0.984417289495468 0.596799234544542 0.606246193471889 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-PheX-3_at AFFX-PheX-3 --- 5.18220465102024 --- --- --- --- 6.85345077514648 1.32249712944031 6.70759201049805 1.49946630001068 0.185130640864372 0.84326845407486 0.313723027706146 0.73717337846756 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=pheB /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2885-3326 of gb:M24537.1, not 100% identical /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. --- --- --- --- --- --- AFFX-PheX-3 // --- // unknown // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-PheX-3 // B. subtilis /GEN=pheB /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2885-3326 of gb:M24537.1, not 100% identical /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. // affx // --- // --- /// AFFX-PheX-3 // --- // unknown // --- // --- /// AFFX-PheX-3 // --- // unknown // --- // --- /// AFFX-PheX-3 // --- // gb // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// M24537 // M24537 B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// M24537 // M24537 B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// M24537 // Bacillus subtilis /REF=M24537 /DEF=B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 /LEN=1409 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-PheX-3 // --- // unknown // --- // --- /// AFFX-PheX-3 // B. subtilis /GEN=pheB /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2885-3326 of gb:M24537.1, not 100% identical /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. // affx // --- // --- /// M24537 // M24537 B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-PheX-3 // --- // unknown // --- // --- /// AFFX-PheX-3 // --- // affx // --- // --- /// AFFX-PheX-3 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-PheX-3 // --- // affx // --- // --- /// AFFX-PheX-3 // --- // affx // --- // --- /// AFFX-PheX-3 // --- // affx // --- // --- /// AFFX-PheX-3 // --- // affx // --- // --- /// AFFX-PheX-3 // --- // affx // --- // --- /// AFFX-PheX-3 // --- // affx // --- // --- /// AFFX-PheX-3 // --- // affx // --- // --- /// AFFX-PheX-3 // --- // affx // --- // --- /// AFFX-PheX-3 // --- // affx // --- // --- /// AFFX-PheX-3 // --- // affx // --- // --- /// AFFX-PheX-3 // --- // affx // --- // --- 50812173 // gb // 20 // Negative Strand Matching Probes AFFX_control No -1.66330958696879 -5.18220465102024 -2.72071218019243 -1.0217453244652 -4.57059340053035 Max fold change at or above threshold 2 5.18220465102024 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773921_at SPAC25B8.03.S1 --- 5.1803630561596 --- --- --- --- 8.18591499328613 15.5926904678345 9.34505176544189 1.58018171787262 0.219482004642487 0.129638999700546 0.303710997104645 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25B8.03 /DEF=phosphatidylserine decarboxylase (predicted) --- --- --- --- --- --- SPAC25B8.03 // |||phosphatidylserine decarboxylase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.50231064021641 1.90481949551433 -1.37181234632934 1.14160136931625 -5.1803630561596 Max fold change at or above threshold 3 5.1803630561596 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773310_at SPCC594.04c.S1 --- 5.17884445412239 --- --- --- --- 1.3182590007782 3.77046537399292 6.8270583152771 1.10837650299072 0.696289002895355 0.35791015625 0.398925989866257 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC594.04c /DEF=conserved protein (mainly bacteria and plants) --- --- --- --- --- --- SPCC594.04c // |||conserved protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 5.00869875979779 2.86018557185434 4.4834283715539 5.17884445412239 -1.18936029158066 Max fold change at or above threshold 2 5.17884445412239 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779263_at YDR107C.S1 multispanning membrane protein 5.17869839538207 228.835861206055 72.4837474822998 --- --- 5624 // membrane fraction // inferred from sequence similarity --- 56.1226844787598 167.029266357422 290.642456054688 88.8448104858398 0.0239257998764515 0.000732421991415322 0.000732421991415322 0.0107421996071935 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR107C /GEN=ARP10 /DB_XREF=GI:6320312 /SEG=NC_001136:-669010,671028 /DEF=multispanning membrane protein /NOTE=Ydr107cp; go_component: membrane fraction [goid GO:0005624] [evidence ISS] [pmid 9729438]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002514 // span:310-332,378-400,407-429,444-466,479-501,536-558,565-587,602-621,634-656 // numtm:9 S0002514 // YDR107C SGDID:S0002514, Chr IV from 671029-669011, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023678 // cdna:GeneFinder chromosome:SGD1:IV:669011:671029:-1 // ensembl // 11 // --- /// YDR107C // cdna:known chromosome:SGD1:IV:669011:671029:-1 gene:YDR107C // ensembl // 11 // --- --- No cerevisiae_gene 3.22622879951877 2.97614534851119 3.42583422969673 5.17869839538207 1.58304634411178 Max fold change at or above threshold 4 5.17869839538207 Max fold change at or above threshold -0.906590742923436 0.156979636665165 1.34240366526173 -0.592792559003461 150.659804344177 104.277614351729 0.692139584314806 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1776364_at SPBC28F2.05c.S1 --- 5.17809888156583 --- --- --- --- 1.6443749666214 6.27951192855835 6.19205093383789 2.75564622879028 0.567627012729645 0.030273400247097 0.030273400247097 0.194580003619194 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC28F2.05c /DEF=aldoketo reductase --- --- --- --- --- --- SPBC28F2.05c // |||aldo/keto reductase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.91112052420988 3.81878346242432 5.17809888156583 3.76559547519769 1.67580161746937 Max fold change at or above threshold 3 5.17809888156583 Max fold change at or above threshold AAPPPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1770752_at SPAC26A3.01.S1 --- 5.17806845049328 --- --- --- --- 0.59918737411499 0.427504599094391 0.413584500551224 2.96591329574585 0.633789002895355 0.951904296875 0.888427972793579 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26A3.01 /GEN=sxa1 /DEF=aspartic protease (PMID 1549128) --- --- --- --- --- --- SPAC26A3.01 // |sxa1|SPAC2E1P5.06|aspartic protease |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.17806845049328 -1.40159281416922 -1.42138554994106 -1.44876651159895 4.94989284466575 Max fold change at or above threshold 1 5.17806845049328 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779708_at SPAC23A1.14c.S1 --- 5.17667304908192 --- --- --- --- 3.47547578811646 8.33634185791016 0.953619420528412 3.00149941444397 0.334473013877869 0.194580003619194 0.633789002895355 0.525390625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23A1.14c /DEF=cystathionine gamma-synthase activity (predicted) --- --- --- --- --- --- D89237 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1499. // gb // 11 // --- /// SPAC23A1.14c // |||cystathionine gamma-synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.17667304908192 2.39861888447454 -1.76817579962844 -3.6445102871234 -1.15791319878045 Max fold change at or above threshold 3 5.17667304908192 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777647_s_at YBL003C.S1 One of two nearly identical (see also HTA2) histone H2A subtypes; core histone required for chromatin assembly and chromosome function; DNA damage-dependent phosphorylation by Mec1p facilitates DNA repair; acetylated by Nat4p /// One of two nearly identical (see also HTA1) histone H2A subtypes; core histone required for chromatin assembly and chromosome function; DNA damage-dependent phosphorylation by Mec1p facilitates DNA repair; acetylated by Nat4p 5.17572709933018 3854.58557128906 862.4892578125 HTA1 /// HTA2 6281 // DNA repair // inferred from mutant phenotype /// 6333 // chromatin assembly or disassembly // traceable author statement 788 // nuclear nucleosome // traceable author statement 3677 // DNA binding // traceable author statement 819.383666992188 4240.90625 3468.26489257813 905.594848632813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL003C /GEN=HTA2 /DB_XREF=GI:6319470 /SEG=NC_001134:-235359,235757 /DEF=Histone H2A (HTA1 and HTA2 code for nearly identical proteins) /NOTE=Hta2p; go_component: nuclear nucleosome [goid GO:0000788] [evidence TAS] [pmid 2275823]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 2275823]; go_process: chromatin assembly/disassembly [goid GO:0006333] [evidence TAS] [pmid 2275823] --- --- --- --- --- --- S0000099 // HTA2 SGDID:S0000099, Chr II from 235795-235397, reverse complement, Verified ORF // sgd // 11 // --- /// S0002633 // HTA1 SGDID:S0002633, Chr IV from 915524-915922, Verified ORF // sgd // 11 // --- /// GENSCAN00000021137 // cdna:Genscan chromosome:SGD1:II:235397:235795:-1 // ensembl // 11 // --- /// GENEFINDER00000023963 // cdna:GeneFinder chromosome:SGD1:IV:915524:915922:1 // ensembl // 11 // --- /// GENSCAN00000025273 // cdna:Genscan chromosome:SGD1:IV:915524:915922:1 // ensembl // 11 // --- /// YBL003C // cdna:known chromosome:SGD1:II:235397:235795:-1 gene:YBL003C // ensembl // 11 // --- /// YDR225W // cdna:known chromosome:SGD1:IV:915524:915922:1 gene:YDR225W // ensembl // 11 // --- --- No cerevisiae_gene 4.51474266025325 5.17572709933018 1.62028865720129 4.23277279288409 1.10521466940767 Max fold change at or above threshold 4 5.17572709933018 Max fold change at or above threshold -0.876310636777234 1.07171868662155 0.631818617510994 -0.827226667355305 2358.53741455078 1756.40199144343 0.74469965182976 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769728_at SPBC1709.15c.S1 --- 5.17389964196619 --- --- --- --- 2.28663945198059 2.27212738990784 9.34883880615234 1.67638516426086 0.432372987270355 0.725830018520355 0.366210997104645 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1709.15c /GEN=cft2 /DEF=CPF complex (PMID 14617822) --- --- --- --- --- --- SPBC1709.15c // |cft2||cleavage factor two Cft2 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.17389964196619 -1.00638699314889 2.78638966824772 4.0884621307722 -1.36402987853259 Max fold change at or above threshold 1 5.17389964196619 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780154_at SPAC30D11.06c.S1 --- 5.17336577574107 --- --- --- --- 1.00573229789734 3.55787801742554 0.754720449447632 3.15923595428467 0.567627012729645 0.466064006090164 0.780517995357513 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30D11.06c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC30D11.06c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.91677522024622 3.53759944357351 5.17336577574107 -1.3325891707763 3.1412294910779 Max fold change at or above threshold 2 5.17336577574107 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769533_at SPBPB8B6.04c.S1 --- 5.17188165457901 --- --- --- --- 0.633843243122101 3.27816224098206 1.20706355571747 0.596796989440918 0.962401986122131 0.725830018520355 0.780517995357513 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB8B6.04c /GEN=grt1 /DEF=zinc finger protein --- --- --- --- --- --- SPBPB8B6.04c // |grt1|SPAPB8B6.04c|transcription factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.09235600155973 5.17188165457901 2.38580983390735 1.90435658787159 -1.06207513499002 Max fold change at or above threshold 1 5.17188165457901 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772627_at YLR210W.S1 B-type cyclin involved in cell cycle progression; activates Cdc28p to promote the G2/M transition; may be involved in DNA replication and spindle assembly; accumulates during S phase and G2, then targeted for ubiquitin-mediated degradation 5.17135304211818 127.427391052246 636.245635986328 CLB4 79 // regulation of cyclin dependent protein kinase activity // traceable author statement /// 84 // S phase of mitotic cell cycle // inferred from genetic interaction /// 84 // S phase of mitotic cell cycle // inferred from mutant phenotype /// 86 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 86 // G2/M transition of mitotic cell cycle // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5816 // spindle pole body // inferred from direct assay 16538 // cyclin-dependent protein kinase regulator activity // traceable author statement 611.860168457031 118.317230224609 136.537551879883 660.631103515625 0.000244141003349796 0.00195312988944352 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR210W /GEN=CLB4 /DB_XREF=GI:6323239 /SEG=NC_001144:+562010,563392 /DEF=Involved in mitotic induction /NOTE=Clb4p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 14562095]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IGI,IMP] [pmid 1427070]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence IGI,IMP] [pmid 1427070]; go_process: regulation of cyclin dependent protein kinase activity [goid GO:0000079] [evidence TAS] --- --- --- --- --- --- S0004200 // CLB4 SGDID:S0004200, Chr XII from 562010-563392, Verified ORF // sgd // 11 // --- /// GENSCAN00000017982 // cdna:Genscan chromosome:SGD1:XII:562013:563392:1 // ensembl // 11 // --- /// GENEFINDER00000024888 // cdna:GeneFinder chromosome:SGD1:XII:562013:563392:1 // ensembl // 11 // --- /// YLR210W // cdna:known chromosome:SGD1:XII:562010:563392:1 gene:YLR210W // ensembl // 11 // --- --- No cerevisiae_gene -1.46606904934109 -5.17135304211818 1.00308647116921 -4.48125925822449 1.07970928256628 Max fold change at or above threshold 4 5.17135304211818 Max fold change at or above threshold 0.780974178015896 -0.894698224485213 -0.83283675753407 0.946560804003387 381.836513519287 294.534264272515 0.771362229237508 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769943_at YJL200C.S1 Hypothetical protein 5.16705582000295 165.34154510498 182.732406616211 --- --- 5739 // mitochondrion // inferred from direct assay 3994 // aconitate hydratase activity // inferred from sequence similarity 142.248153686523 151.150375366211 179.53271484375 223.216659545898 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL200C /GEN=ECM25 /DB_XREF=GI:6322261 /SEG=NC_001142:-56444,58813 /DEF=Hypothetical ORF /NOTE=Yjl200cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14576278]; go_function: aconitate hydratase activity [goid GO:0003994] [evidence ISS] [pmid 10592175]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003736 // YJL200C SGDID:S0003736, Chr X from 58813-56444, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000023988 // cdna:Genscan chromosome:SGD1:X:56444:58756:-1 // ensembl // 11 // --- /// GENEFINDER00000024464 // cdna:GeneFinder chromosome:SGD1:X:56444:58756:-1 // ensembl // 11 // --- /// YJL200C // cdna:known chromosome:SGD1:X:56444:58813:-1 gene:YJL200C // ensembl // 11 // --- --- No cerevisiae_gene 5.16705582000295 1.06258233551 -1.06645038797122 1.26210928009225 1.56920602314324 Max fold change at or above threshold 4 5.16705582000295 Max fold change at or above threshold -0.872410001817709 -0.62809811164355 0.150824639869603 1.34968347359166 174.036975860596 36.4379387075328 0.209368948910717 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775304_at SPAC17G8.08c.S1 --- 5.16400291411735 --- --- --- --- 0.887529373168945 1.88423299789429 3.70708870887756 0.875198662281036 0.850341975688934 0.780517995357513 0.5 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G8.08c /DEF=conserved protein (broad species distribution) --- --- --- --- --- --- SPAC17G8.08c // |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.16400291411735 2.12300917001382 2.16483849321221 4.17686312244666 -1.01408904220188 Max fold change at or above threshold 1 5.16400291411735 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774972_at SPBC359.01.S1 --- 5.16361933178364 --- --- --- --- 5.25164318084717 2.34301495552063 5.12624597549438 1.59518265724182 0.5 0.423828125 0.171387001872063 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC359.01 /DEF=amino acid permease family --- --- --- --- --- --- SPBC359.01 // ||SPBPB10D8.08|amino acid permease family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.448651786985 -2.24140403733796 -5.16361933178364 -1.02446180030226 -3.29218924052723 Max fold change at or above threshold 2 5.16361933178364 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770504_at SPCC1223.14.S1 --- 5.1631573316441 --- --- --- --- 3.1555118560791 16.2924041748047 4.04040002822876 1.23814070224762 0.303710997104645 0.149657994508743 0.366210997104645 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1223.14 /DEF=chorismate synthase (predicted) --- --- --- --- --- --- SPCC1223.14 // ||SPCC297.01|chorismate synthase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.53538993361327 5.1631573316441 1.98668412116318 1.28042619153686 -2.54858906613024 Max fold change at or above threshold 3 5.1631573316441 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775313_at SPAC57A10.07.S1 --- 5.16273896853328 --- --- --- --- 2.58488750457764 13.3450994491577 7.16748905181885 2.36391973495483 0.274170011281967 0.00122069998178631 0.0676269978284836 0.219482004642487 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC57A10.07 /DEF=conserved protein (fungal and protazoan) --- --- --- --- --- --- SPAC57A10.07 // |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.78211356707795 5.16273896853328 -1.3043178911871 2.77284370756011 -1.09347515753407 Max fold change at or above threshold 3 5.16273896853328 Max fold change at or above threshold AAPAAA No 3 0 APAA 3 1 0 No No x = 1
1771039_at SPAC13C5.01c.S1 --- 5.15928087496206 --- --- --- --- 2.22872996330261 11.4986438751221 8.09710884094238 4.40816354751587 0.466064006090164 0.0461426004767418 0.0107421996071935 0.129638999700546 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13C5.01c /DEF=20S proteasome component (alpha 3) --- --- --- --- --- --- SPAC13C5.01c // ||SPAC31A2.17c|20S proteasome component |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.38824417138745 5.15928087496206 1.2124747712632 3.63305962331291 1.9778814033548 Max fold change at or above threshold 3 5.15928087496206 Max fold change at or above threshold AAPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1774697_at YLR168C.S1 possibly involved in intramitochondrial sorting 5.15842654190998 4968.29272460938 1213.61450195313 --- --- 5739 // mitochondrion // inferred from direct assay --- 1118.89672851563 5771.74658203125 4164.8388671875 1308.33227539063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR168C /GEN=RPS31 /DB_XREF=GI:6323197 /SEG=NC_001144:-499580,500272 /DEF=possibly involved in intramitochondrial sorting /NOTE=Ylr168cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004158 // YLR168C SGDID:S0004158, Chr XII from 500272-499580, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017951 // cdna:Genscan chromosome:SGD1:XII:499580:500272:-1 // ensembl // 11 // --- /// YLR168C // cdna:known chromosome:SGD1:XII:499580:500272:-1 gene:YLR168C // ensembl // 11 // --- GENEFINDER00000024622 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 2.02368819033642 5.15842654190998 -1.00565530124285 3.72227280770831 1.16930565801753 Max fold change at or above threshold 4 5.15842654190998 Max fold change at or above threshold -0.870214412793528 1.18296013524937 0.473875998636175 -0.78662172109202 3090.95361328125 2266.17354961406 0.733163234762482 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777823_s_at YLR312C-B.S1 Identified by fungal homology and RT-PCR /// Protein involved in shmoo formation and bipolar bud site selection; homologous to Spa2p, localizes to sites of polarized growth in a cell cycle dependent- and Spa2p-dependent manner, interacts with MAPKKs Mkk1p, Mkk2p, and Ste7p 5.1556025193475 34.9267740249634 138.789581298828 SPH1 7015 // actin filament organization // inferred from physical interaction /// 7121 // bipolar bud site selection // traceable author statement /// 7124 // pseudohyphal growth // inferred from mutant phenotype /// 7266 // Rho protein signal transduction // inferred from physical interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction 131 // incipient bud site // inferred from direct assay /// 133 // polarisome // traceable author statement /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 5937 // mating projection // inferred from direct assay 5519 // cytoskeletal regulatory protein binding // inferred from physical interaction 129.800323486328 25.1765575408936 44.6769905090332 147.778839111328 0.000732421991415322 0.00292969006113708 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR312C-B /GEN=SPH1 /DB_XREF=GI:33438844 /SEG=NC_001144:-760357,760644 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ylr312c-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028570 // YLR312C-B SGDID:S0028570, Chr XII from 760644-760357, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0004305 // SPH1 SGDID:S0004305, Chr XII from 762342-760357, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018063 // cdna:Genscan chromosome:SGD1:XII:760357:762342:-1 // ensembl // 11 // --- /// GENEFINDER00000024746 // cdna:GeneFinder chromosome:SGD1:XII:760357:761979:-1 // ensembl // 11 // --- /// YLR313C // cdna:known chromosome:SGD1:XII:760357:762342:-1 gene:YLR313C // ensembl // 11 // --- /// YLR312C-B // cdna:known chromosome:SGD1:XII:760357:760644:-1 gene:YLR312C-B // ensembl // 11 // --- --- No cerevisiae_gene -1.5972168384018 -5.1556025193475 -1.93151480266706 -2.9053058858135 1.13850902017893 Max fold change at or above threshold 4 5.1556025193475 Max fold change at or above threshold 0.704720313501841 -1.0122524115747 -0.692232278186067 0.999764376258926 86.8581776618958 60.9350191866155 0.701546139084466 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772180_at SPAC806.04c.S1 --- 5.15206799235355 --- --- --- --- 1.01173782348633 5.21254205703735 1.64801049232483 3.09734749794006 0.725830018520355 0.366210997104645 0.696289002895355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC806.04c /DEF=conserved protein (broad species distribution) --- --- --- --- --- --- SPAC806.04c // |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.10655245730595 5.15206799235355 1.38010494078523 1.62889085894405 3.06141317052571 Max fold change at or above threshold 2 5.15206799235355 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774825_at SPBC17A3.07.S1 --- 5.14783385278191 --- --- --- --- 17.6239261627197 26.1440372467041 19.8735160827637 11.3633794784546 0.432372987270355 0.366210997104645 0.432372987270355 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17A3.07 /GEN=pgr1 /DEF=glutathione reductase (PMID 9287302) --- --- --- --- --- --- SPBC17A3.07 // |pgr1||glutathione reductase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.14783385278191 1.48344001247617 -1.8913237487294 1.12764408448343 -1.55094056272039 Max fold change at or above threshold 4 5.14783385278191 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769696_at SPBC15D4.05.S1 --- 5.14714519151521 --- --- --- --- 4.50185298919678 1.22502207756042 6.76276111602783 3.74219799041748 0.274170011281967 0.533936023712158 0.171387001872063 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC15D4.05 /DEF=conserved protein --- --- --- --- --- --- SPBC15D4.05 // |||conserved protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.14714519151521 -3.67491580083357 -5.06646397741171 1.50221722749646 -1.20299700890346 Max fold change at or above threshold 3 5.14714519151521 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774062_at SPAC17G8.02.S1 --- 5.14667369143885 --- --- --- --- 7.46218013763428 5.53033876419067 3.54134917259216 1.44990348815918 0.303710997104645 0.194580003619194 0.390625 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G8.02 /DEF=uridine ribohydrolase (predicted) --- --- --- --- --- --- SPAC17G8.02 // |||uridine ribohydrolase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.35904821190185 -1.34931700494596 1.2680212553563 -2.10715740638819 -5.14667369143885 Max fold change at or above threshold 3 5.14667369143885 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1779183_at SPBC609.03.S1 --- 5.14522246702219 --- --- --- --- 0.917227745056152 4.71934080123901 4.51796579360962 0.847204387187958 0.828612983226776 0.753906011581421 0.696289002895355 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC609.03 /DEF=WD repeat protein --- --- --- --- --- --- SPBC609.03 // |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.50407325090472 5.14522246702219 2.07984194459665 4.92567502232832 -1.08265226069074 Max fold change at or above threshold 2 5.14522246702219 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774767_at YFL044C.S1 Protein of unknown function, proposed to act as a deubiquitinating (DUB) enzyme and/or transcription factor; contains a C2H2-type DNA-binding Zn finger domain; has similarity to the ovarian tumor (OTU) superfamily of cysteine proteases 5.14280693540668 679.68440246582 193.567008972168 --- 45449 // regulation of transcription // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 169.150314331055 489.461395263672 869.907409667969 217.983703613281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL044C /GEN=SEC53 /DB_XREF=GI:14318475 /SEG=NC_001138:-44655,45560 /DEF=Hypothetical ORF /NOTE=Yfl044cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001850 // YOD1 SGDID:S0001850, Chr VI from 45560-44655, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018594 // cdna:GeneFinder chromosome:SGD1:VI:44655:45560:-1 // ensembl // 11 // --- /// GENSCAN00000023204 // cdna:Genscan chromosome:SGD1:VI:44655:45560:-1 // ensembl // 11 // --- /// YFL044C // cdna:known chromosome:SGD1:VI:44655:45560:-1 gene:YFL044C // ensembl // 11 // --- --- No cerevisiae_gene 1.58369301700835 2.89364756547668 1.41429912312868 5.14280693540668 1.28869818820822 Max fold change at or above threshold 4 5.14280693540668 Max fold change at or above threshold -0.832248944027367 0.164398102578115 1.34815482914804 -0.680303987698787 436.625705718994 321.388682205578 0.736073662168712 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769554_at YOR084W.S1 Putative lipase of the peroxisomal matrix; transcriptionally activated by Yrm1p along with genes involved in multidrug resistance 5.14169468471911 3983.45227050781 946.129058837891 --- 7031 // peroxisome organization and biogenesis // inferred from expression pattern 5782 // peroxisomal matrix // inferred from direct assay 16298 // lipase activity // inferred from sequence similarity 884.548461914063 4548.078125 3418.82641601563 1007.70965576172 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR084W /GEN=WHI5 /DB_XREF=GI:6324658 /SEG=NC_001147:+480588,481751 /DEF=Putative lipase of the peroxisomal matrix; transcriptionally activated by Yrm1p along with genes involved in multidrug resistance /NOTE=Yor084wp; go_component: peroxisomal matrix [goid GO:0005782] [evidence IDA] [pmid 12135984]; go_function: lipase activity [goid GO:0016298] [evidence ISS] [pmid 9200815]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence IEP] [pmid 12135984] --- --- --- --- --- --- S0005610 // YOR084W SGDID:S0005610, Chr XV from 480588-481751, Verified ORF // sgd // 11 // --- /// GENSCAN00000017524 // cdna:Genscan chromosome:SGD1:XV:480588:481751:1 // ensembl // 11 // --- /// GENEFINDER00000022846 // cdna:GeneFinder chromosome:SGD1:XV:480588:481751:1 // ensembl // 11 // --- /// YOR084W // cdna:known chromosome:SGD1:XV:480588:481751:1 gene:YOR084W // ensembl // 11 // --- --- No cerevisiae_gene 1.13267922686874 5.14169468471911 -1.07500146684417 3.86505269436303 1.13923623085744 Max fold change at or above threshold 4 5.14169468471911 Max fold change at or above threshold -0.87119271972267 1.14852322343879 0.525963045078755 -0.803293548794877 2464.79066467285 1813.8836183822 0.73591791967573 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769957_at SPBC1711.03.S1 --- 5.14137747514067 --- --- --- --- 0.429387927055359 0.366986960172653 1.24272584915161 0.282562583684921 0.919434010982513 0.989257991313934 0.828612983226776 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1711.03 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC1711.03 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.24892787746251 -1.1700359240376 5.14137747514067 2.89417976344592 -1.51962061450485 Max fold change at or above threshold 0 5.14137747514067 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770570_at SPAC1486.07c.S1 --- 5.14047829454189 --- --- --- --- 1.0999481678009 3.26371169090271 2.23997354507446 2.44230365753174 0.696289002895355 0.432372987270355 0.366210997104645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1486.07c /GEN=mrpl19 /DEF=mitochondrial ribosomal protein subunit YmL19 --- --- --- --- --- --- SPAC1486.07c // |mrpl19||mitochondrial ribosomal protein subunit L19|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.83448310692255 2.96715044075919 5.14047829454189 2.03643554364273 2.22038067704096 Max fold change at or above threshold 1 5.14047829454189 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769956_at SPBC29A10.15.S1 --- 5.13906224083358 --- --- --- --- 1.30013954639435 0.57470166683197 0.690813779830933 0.919417381286621 0.601073980331421 0.888427972793579 0.919434010982513 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A10.15 /GEN=orc1 /DEF=origin recognition complex (subunit 1) (PMID 8618924) --- --- --- --- --- --- U40378 // Schizosaccharomyces pombe origin recognition protein 1 (orc1+) gene, complete cds. // gb // 10 // --- /// SPBC29A10.15 // |orc1|orp1|origin recognition complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -3.14789235869084 -2.26228601973845 5.13906224083358 -1.88204055036734 -1.41409067617903 Max fold change at or above threshold 0 5.13906224083358 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769548_at SPBC3H7.06c.S1 --- 5.13518555394533 --- --- --- --- 0.595057249069214 0.284431427717209 1.42336177825928 3.05572938919067 0.904784977436066 0.932861328125 0.601073980331421 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3H7.06c /GEN=pof9 /DEF=F-box protein --- --- --- --- --- --- SPBC3H7.06c // |pof9||F-box protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.27872387013488 -2.09209387951615 1.28823826021666 2.39197452091491 5.13518555394533 Max fold change at or above threshold 1 5.13518555394533 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778286_at YLR466C-B.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 5.1305814404151 4.51946258544922 8.53700351715088 --- --- --- --- 9.42424392700195 2.55380630493164 6.4851188659668 7.6497631072998 0.296142578125 0.780517995357513 0.5 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR466C-B /GEN=YRF1-4 /DB_XREF=GI:33438849 /SEG=NC_001144:-1071591,1071707 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ylr466c-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028686 // YLR466C-B SGDID:S0028686, Chr XII from 1071707-1071591, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YLR466C-B // cdna:known chromosome:SGD1:XII:1071591:1071707:-1 gene:YLR466C-B // ensembl // 11 // --- S0028672 // sgd // 4 // Cross Hyb Matching Probes /// YLL066W-B // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene -4.14500458404714 -3.69027357666196 -5.1305814404151 -1.45321066919211 -1.2319654602126 Max fold change at or above threshold 4 5.1305814404151 Max fold change at or above threshold 0.994442709463884 -1.36475305924616 -0.014804705202889 0.385115054985166 6.52823305130005 2.91219478823791 0.446092344644155 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771168_at SPAC4C5.03.S1 --- 5.13022823918501 --- --- --- --- 4.98075389862061 0.970863997936249 6.55477094650269 1.46625411510468 0.398925989866257 0.943848013877869 0.633789002895355 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4C5.03 /DEF=conserved fungal protein --- --- --- --- --- --- SPAC4C5.03 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.50532333819428 -5.13022823918501 -1.40273563986481 1.31601983955039 -3.39692407155838 Max fold change at or above threshold 2 5.13022823918501 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776945_at SPAC19B12.11c.S1 --- 5.12866377281419 --- --- --- --- 1.15679156780243 4.6787052154541 0.818763136863709 0.491941630840302 0.8447265625 0.633789002895355 0.432372987270355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19B12.11c /DEF=zinc finger protein --- --- --- --- --- --- SPAC19B12.11c // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.12866377281419 4.04455335401718 -3.28617999694202 -1.41285252806269 -2.35148134510689 Max fold change at or above threshold 1 5.12866377281419 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775793_at SPBC2D10.15c.S1 --- 5.12627076083203 --- --- --- --- 1.52495455741882 0.62784332036972 0.315922200679779 0.418614029884338 0.633789002895355 0.932372987270355 0.780517995357513 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2D10.15c /DEF=peptidyl-tRNA hydrolase (predicted) --- --- --- --- --- --- SPBC2D10.15c // |||peptidyl-tRNA hydrolase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.12627076083203 -2.42887756856411 -3.30044395303382 -4.8269939692036 -3.64286538088597 Max fold change at or above threshold 0 5.12627076083203 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777400_at SPBC1604.11.S1 --- 5.12385517563398 --- --- --- --- 1.09832549095154 5.62766075134277 2.00482201576233 1.16680061817169 0.696289002895355 0.665526986122131 0.601073980331421 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1604.11 /GEN=atp17 /DEF=F-type ATPase subunit F (predicted) --- --- --- --- --- --- SPBC1604.11 // |atp17||F-type ATPase subunit F|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 3.85917067513026 5.12385517563398 -1.46731710020586 1.82534415551572 1.06234502229465 Max fold change at or above threshold 1 5.12385517563398 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774214_at SPBC3E7.15c.S1 --- 5.12287185150599 --- --- --- --- 6.08721494674683 1.1882426738739 6.0700831413269 4.44852352142334 0.129638999700546 0.828612983226776 0.274170011281967 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3E7.15c /DEF=LAG1 domain --- --- --- --- --- --- SPBC3E7.15c // ||SPBC4F6.02c|LAG1 domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.74007062749974 -5.12287185150599 -1.19601707239334 -1.00282233455804 -1.36836748584824 Max fold change at or above threshold 3 5.12287185150599 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775906_at YMR299C.S1 Dynein light intermediate chain (LIC); localizes with dynein, null mutant is defective in nuclear migration 5.11729826305592 88.9563789367676 422.870941162109 DYN3 30473 // nuclear migration, microtubule-mediated // inferred from mutant phenotype 5868 // cytoplasmic dynein complex // inferred from physical interaction /// 5881 // cytoplasmic microtubule // inferred from direct assay 3774 // motor activity // inferred from mutant phenotype /// 3774 // motor activity // inferred from sequence similarity 427.730346679688 83.5851898193359 94.3275680541992 418.011535644531 0.000732421991415322 0.000732421991415322 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR299C /GEN=PRC1 /DB_XREF=GI:6323957 /SEG=NC_001145:-864411,865349 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ymr299cp --- --- --- --- --- --- S0004914 // DYN3 SGDID:S0004914, Chr XIII from 865349-864411, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018965 // cdna:Genscan chromosome:SGD1:XIII:864411:865349:-1 // ensembl // 11 // --- /// YMR299C // cdna:known chromosome:SGD1:XIII:864411:865349:-1 gene:YMR299C // ensembl // 11 // --- --- No cerevisiae_gene -1.28303688610167 -5.11729826305592 -1.00035108257121 -4.53452108967677 -1.02325010246469 Max fold change at or above threshold 4 5.11729826305592 Max fold change at or above threshold 0.890812609019904 -0.893466037466119 -0.837770364536104 0.840423792982319 255.913660049438 192.876352322052 0.753677440605519 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777641_at YLR104W.S1 Hypothetical protein 5.11141701870244 248.589324951172 1180.60607910156 --- --- --- --- 1117.06237792969 218.542602539063 278.636047363281 1244.14978027344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR104W /GEN=CDC45 /DB_XREF=GI:6323133 /SEG=NC_001144:+346586,346981 /DEF=Hypothetical ORF /NOTE=Ylr104wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004094 // span:6-28 // numtm:1 S0004094 // YLR104W SGDID:S0004094, Chr XII from 346586-346981, Uncharacterized ORF // sgd // 11 // --- /// YLR104W // cdna:known chromosome:SGD1:XII:346586:346981:1 gene:YLR104W // ensembl // 11 // --- --- No cerevisiae_gene -1.41986077382236 -5.11141701870244 -1.18282068151649 -4.00903755454613 1.11376929780706 Max fold change at or above threshold 4 5.11141701870244 Max fold change at or above threshold 0.743718363125353 -0.916665011115921 -0.805617753815835 0.978564401806402 714.597702026367 541.151994972975 0.757282025170867 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770682_at YDR345C.S1 Low affinity glucose transporter of the major facilitator superfamily, expression is induced in low or high glucose conditions 5.10929328487209 340.377716064453 1780.74133300781 HXT3 8645 // hexose transport // traceable author statement 5886 // plasma membrane // inferred from sequence similarity 5353 // fructose transporter activity // traceable author statement /// 5355 // glucose transporter activity // traceable author statement /// 5355 // glucose transporter activity // inferred from direct assay /// 15578 // mannose transporter activity // traceable author statement 1701.57678222656 347.719787597656 333.03564453125 1859.90588378906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR345C /GEN=HXT3 /DB_XREF=GI:6320552 /SEG=NC_001136:-1162947,1164650 /DEF=Low affinity glucose transporter of the major facilitator superfamily, expression is induced in low or high glucose conditions /NOTE=Hxt3p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 8929273]; go_function: fructose transporter activity [goid GO:0005353] [evidence TAS] [pmid 10618490]; go_function: glucose transporter activity [goid GO:0005355] [evidence TAS] [pmid 10618490]; go_function: glucose transporter activity [goid GO:0005355] [evidence IDA] [pmid 12702270]; go_function: mannose transporter activity [goid GO:0015578] [evidence TAS] [pmid 10618490]; go_process: hexose transport [goid GO:0008645] [evidence TAS] [pmid 10618490] --- --- --- --- --- S0002753 // span:59-78,114-131,141-160,167-189,199-221,234-253,356-378,385-407,427-449,461-483,487-509 // numtm:11 S0002753 // HXT3 SGDID:S0002753, Chr IV from 1164652-1162949, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023516 // cdna:GeneFinder chromosome:SGD1:IV:1162949:1164652:-1 // ensembl // 11 // --- /// GENSCAN00000025371 // cdna:Genscan chromosome:SGD1:IV:1162949:1164652:-1 // ensembl // 11 // --- /// YDR345C // cdna:known chromosome:SGD1:IV:1162949:1164652:-1 gene:YDR345C // ensembl // 11 // --- --- No cerevisiae_gene 2.20552212134927 -4.89352876344053 1.22310985538244 -5.10929328487209 1.09304846141314 Max fold change at or above threshold 4 5.10929328487209 Max fold change at or above threshold 0.768491440887532 -0.854596705454531 -0.872200971373922 0.95830623594092 1060.55952453613 834.124134095909 0.786494406771499 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771933_at SPCC338.04.S1 --- 5.10847408539124 --- --- --- --- 0.590656101703644 1.35647630691528 3.01735138893127 2.94251298904419 0.828612983226776 0.525390625 0.432372987270355 0.26708984375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC338.04 /GEN=cid2 /DEF=caffeine induced death protein --- --- --- --- --- --- AF105077 // Schizosaccharomyces pombe caffeine-induced death protein 2 (cid2) mRNA, complete cds. // gb // 11 // --- /// SPCC338.04 // |cid2||caffeine induced death protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.52711577147937 2.29655852703928 -1.26709940031984 5.10847408539124 4.98177023915782 Max fold change at or above threshold 2 5.10847408539124 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776851_at SPAPB1A10.11c.S1 --- 5.10777741673982 --- --- --- --- 1.6321679353714 3.16861081123352 2.29920434951782 0.31954562664032 0.780517995357513 0.24609400331974 0.780517995357513 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1A10.11c /DEF=glutamyl-tRNA synthetase (predicted) --- --- --- --- --- --- SPAPB1A10.11c // |||glutamyl-tRNA synthetase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.93388691781256 1.94135097410335 -1.19823796681019 1.40868123903846 -5.10777741673982 Max fold change at or above threshold 1 5.10777741673982 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770130_at SPCC4G3.06c.S1 --- 5.10472135341376 --- --- --- --- 0.639513373374939 0.891711473464966 0.955762207508087 3.26453757286072 0.780517995357513 0.601073980331421 0.805419981479645 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4G3.06c /GEN=mrpl4 /DEF=mitochondrial ribosomal protein subunit YmL4 --- --- --- --- --- --- SPCC4G3.06c // |mrpl4||mitochondrial ribosomal protein subunit L4|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.28833188216068 1.39435938416594 -1.53289718209477 1.49451480969693 5.10472135341376 Max fold change at or above threshold 1 5.10472135341376 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769336_at YNL126W.S1 Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex; interacts with Spc110p at the spindle pole body (SPB) inner plaque and with Spc72p at the SPB outer plaque 5.10191962395808 32.932279586792 177.426429748535 SPC98 7020 // microtubule nucleation // inferred from physical interaction /// 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from mutant phenotype 928 // gamma-tubulin complex (sensu Saccharomyces) // inferred from physical interaction /// 5822 // inner plaque of spindle pole body // inferred from direct assay /// 5824 // outer plaque of spindle pole body // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from physical interaction 166.653060913086 32.6647758483887 33.1997833251953 188.199798583984 0.000732421991415322 0.014160200022161 0.00585938012227416 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL126W /GEN=SPC98 /DB_XREF=GI:6324203 /SEG=NC_001146:+387227,389767 /DEF=Involved in microtubule organization by the SBP /NOTE=Spc98p; go_component: inner plaque of spindle pole body [goid GO:0005822] [evidence IDA] [pmid 9215630]; go_component: outer plaque of spindle pole body [goid GO:0005824] [evidence IDA] [pmid 9215630]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9215630]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752]; go_process: mitotic spindle assembly (sensu Fungi) [goid GO:0030472] [evidence IMP] [pmid 9153752] --- --- --- --- --- --- S0005070 // SPC98 SGDID:S0005070, Chr XIV from 387227-389767, Verified ORF // sgd // 11 // --- /// GENSCAN00000019932 // cdna:Genscan chromosome:SGD1:XIV:387227:389767:1 // ensembl // 11 // --- /// YNL126W // cdna:known chromosome:SGD1:XIV:387227:389767:1 gene:YNL126W // ensembl // 11 // --- --- No cerevisiae_gene -2.22129107220687 -5.10191962395808 -2.11424842504896 -5.01970326976842 1.12929098063273 Max fold change at or above threshold 4 5.10191962395808 Max fold change at or above threshold 0.732820035591586 -0.864436837744868 -0.858059083382215 0.989675885535498 105.179354667664 83.8864977208167 0.797556687677671 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1769540_at SPBC336.02.S1 --- 5.10176914982514 --- --- --- --- 9.60637474060059 17.6620082855225 11.7166175842285 1.88294970989227 0.274170011281967 0.00415039015933871 0.0952147990465164 0.219482004642487 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC336.02 /DEF=methylase --- --- --- --- --- --- SPBC336.02 // |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.77364214806762 1.83857165293327 -1.66149533217448 1.21967109347808 -5.10176914982514 Max fold change at or above threshold 3 5.10176914982514 Max fold change at or above threshold APPAAA No 3 0 APAA 3 1 0 No No x = 1
1778129_at SPAC31A2.09c.S1 --- 5.10155751968632 --- --- --- --- 5.35191345214844 1.04907441139221 5.04736948013306 3.97080397605896 0.533936023712158 0.567627012729645 0.432372987270355 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31A2.09c /GEN=apm4 /DEF=AP adaptor complex (predicted) --- --- --- --- --- --- SPAC31A2.09c // |apm4||AP-2 adaptor complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.07294006261682 -5.10155751968632 -2.24810262480834 -1.06033716636242 -1.347816080677 Max fold change at or above threshold 3 5.10155751968632 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774174_at YLR448W.S1 Protein component of the large (60S) ribosomal subunit, has similarity to Rpl6Bp and to rat L6 ribosomal protein; binds to 5.8S rRNA 5.10069713291441 440.742416381836 1927.12890625 RPL6B 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3723 // RNA binding // inferred from direct assay /// 3735 // structural constituent of ribosome // traceable author statement 1990.69555664063 390.279113769531 491.205718994141 1863.56225585938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR448W /GEN=RPL6B /DB_XREF=GI:6323481 /SEG=NC_001144:+1028849,1029763 /DEF=Protein component of the large (60S) ribosomal subunit, has similarity to Rpl6Bp and to rat L6 ribosomal protein; binds to 5.8S rRNA /NOTE=Rpl6bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 6337137]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 3282992] --- --- --- --- --- --- S0004440 // RPL6B SGDID:S0004440, Chr XII from 1028849-1028863,1029248-1029763, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024883 // cdna:GeneFinder chromosome:SGD1:XII:1028849:1029763:1 // ensembl // 11 // --- /// YLR448W // cdna:known chromosome:SGD1:XII:1028849:1029763:1 gene:YLR448W // ensembl // 11 // --- --- No cerevisiae_gene 1.48127598989881 -5.10069713291441 -1.5802401400801 -4.05267178223626 -1.06822058151345 Max fold change at or above threshold 4 5.10069713291441 Max fold change at or above threshold 0.937307636494949 -0.922083939819589 -0.804825659690948 0.789601963015587 1183.93566131592 860.720497638936 0.726999384985384 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776193_at YBR069C.S1 Amino acid transport protein for valine, leucine, isoleucine, and tyrosine, low-affinity tryptophan and histidine transporter; overexpression confers FK506 resistance 5.09935486835475 444.374496459961 104.300426483154 TAT1 6865 // amino acid transport // inferred from direct assay 5886 // plasma membrane // inferred from sequence similarity 15171 // amino acid transporter activity // inferred from direct assay 103.607322692871 407.082733154297 481.666259765625 104.993530273438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR069C /GEN=TAT1 /DB_XREF=GI:6319543 /SEG=NC_001134:-376534,378393 /DEF=Amino acid transport protein for valine, leucine, isoleucine, and tyrosine /NOTE=Tat1p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 10654085]; go_function: amino acid transporter activity [goid GO:0015171] [evidence IDA] [pmid 10654085]; go_process: amino acid transport [goid GO:0006865] [evidence IDA] [pmid 10654085] --- --- --- --- --- S0000273 // span:99-121,131-153,166-188,203-225,232-254,282-304,325-342,372-394,422-441,451-473,494-516,531-548 // numtm:12 S0000273 // TAT1 SGDID:S0000273, Chr II from 378430-376571, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000021194 // cdna:Genscan chromosome:SGD1:II:376571:378430:-1 // ensembl // 10 // --- /// GENEFINDER00000022379 // cdna:GeneFinder chromosome:SGD1:II:376571:378430:-1 // ensembl // 10 // --- /// YBR069C // cdna:known chromosome:SGD1:II:376571:378430:-1 gene:YBR069C // ensembl // 10 // --- --- No cerevisiae_gene 5.09935486835475 3.92909229361167 -1.1351608561642 4.64895962222144 1.01337943636161 Max fold change at or above threshold 4 5.09935486835475 Max fold change at or above threshold -0.859280651590995 0.668103735890639 1.04348081812691 -0.852303902426551 274.337461471558 198.689611435533 0.724252569699209 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779311_at SPBC25H2.09.S1 --- 5.09883648312824 --- --- --- --- 1.01359724998474 5.16816663742065 3.13701963424683 0.552230536937714 0.567627012729645 0.432372987270355 0.601073980331421 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25H2.09 /DEF=sequence orphan --- --- --- --- --- --- SPBC25H2.09 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.87304458481865 5.09883648312824 -1.85436346280214 3.09493700214168 -1.83546034162733 Max fold change at or above threshold 2 5.09883648312824 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779896_at SPBC19F8.05.S1 --- 5.09447582411486 --- --- --- --- 3.89373826980591 10.0650129318237 19.836555480957 4.76122808456421 0.24609400331974 0.111571997404099 0.0805663987994194 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19F8.05 /DEF=sequence orphan --- --- --- --- --- --- SPBC19F8.05 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.35796859594593 2.58492282593135 2.09544854423244 5.09447582411486 1.22279099278071 Max fold change at or above threshold 4 5.09447582411486 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770683_at YDR489W.S1 Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p), which binds to DNA replication origins and facilitates assembly of the DNA replication machinery 5.09180020993595 111.67603302002 529.374328613281 SLD5 6261 // DNA-dependent DNA replication // inferred from mutant phenotype 811 // GINS complex // inferred from physical interaction 3677 // DNA binding // inferred from physical interaction 508.352416992188 99.8374633789063 123.514602661133 550.396240234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR489W /GEN=SLD5 /DB_XREF=GI:6320697 /SEG=NC_001136:+1431000,1431884 /DEF=Synthetic Lethality with Dpb11-1 /NOTE=Sld5p; go_component: GINS complex [goid GO:0000811] [evidence IPI] [pmid 12730134]; go_function: DNA binding [goid GO:0003677] [evidence IPI] [pmid 12730134]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence IMP] [pmid 12730134] --- --- --- --- --- --- S0002897 // SLD5 SGDID:S0002897, Chr IV from 1431002-1431886, Verified ORF // sgd // 10 // --- /// GENSCAN00000025484 // cdna:Genscan chromosome:SGD1:IV:1431002:1431886:1 // ensembl // 10 // --- /// GENEFINDER00000023619 // cdna:GeneFinder chromosome:SGD1:IV:1431323:1431886:1 // ensembl // 10 // --- /// YDR489W // cdna:known chromosome:SGD1:IV:1431002:1431886:1 gene:YDR489W // ensembl // 10 // --- --- No cerevisiae_gene 1.2665386057084 -5.09180020993595 -1.3137070172558 -4.11572725847544 1.0827060555568 Max fold change at or above threshold 4 5.09180020993595 Max fold change at or above threshold 0.776269303164652 -0.91207805705181 -0.814223045255921 0.950031799143079 320.52518081665 241.961437106702 0.754890572061203 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777868_at SPBC3B9.06c.S1 --- 5.09078580240235 --- --- --- --- 2.26081895828247 11.5093450546265 10.504451751709 2.74027395248413 0.5 0.129638999700546 0.219482004642487 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B9.06c /DEF=involved in autophagy (predicted) --- --- --- --- --- --- SPBC3B9.06c // |||autophagy associated protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.04137412441793 5.09078580240235 2.15636660219042 4.64630381536129 1.21207137902183 Max fold change at or above threshold 3 5.09078580240235 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774454_at SPBC13E7.06.S1 --- 5.08985717086439 --- --- --- --- 1.06834971904755 5.01406908035278 5.43774747848511 3.93603491783142 0.688720703125 0.0561522990465164 0.111571997404099 0.171387001872063 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13E7.06 /DEF=hypothetical protein --- --- --- --- --- --- SPBC13E7.06 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.8564838500298 4.69328440954982 -2.24668515889396 5.08985717086439 3.68421954689188 Max fold change at or above threshold 3 5.08985717086439 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1769755_at SPAC6F12.14.S1 --- 5.08975136357064 --- --- --- --- 1.05278599262238 5.3584189414978 0.67079496383667 1.43252980709076 0.398925989866257 0.303710997104645 0.567627012729645 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F12.14 /GEN=cut23 /DEF=anaphase-promoting complex (APC) (PMID 10526233) --- --- --- --- --- --- SPAC6F12.14 // |cut23|apc8|anaphase-promoting complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.34273150213836 5.08975136357064 2.60069735191746 -1.56946019183101 1.36070371103863 Max fold change at or above threshold 1 5.08975136357064 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776517_at YJL151C.S1 Integral membrane protein localized to vacuolar intralumenal vesicles, computational analysis of large-scale protein-protein interaction data suggests a possible role in either cell wall synthesis or protein-vacuolar targeting 5.08842993819907 3263.55871582031 755.797729492188 SNA3 --- 328 // vacuolar lumen (sensu Fungi) // inferred from direct assay /// 16020 // membrane // inferred from direct assay --- 685.904357910156 3490.17626953125 3036.94116210938 825.691101074219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL151C /GEN=SNA3 /DB_XREF=GI:6322310 /SEG=NC_001142:-136290,136691 /DEF=Integral membrane protein localized to vacuolar intralumenal vesicles, computational analysis of large-scale protein-protein interaction data suggests a possible role in either cell wall synthesis or protein-vacuolar targeting /NOTE=Sna3p; go_component: membrane [goid GO:0016020] [evidence IDA] [pmid 11566881]; go_component: vacuolar lumen (sensu Fungi) [goid GO:0000328] [evidence IDA] [pmid 12499386]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003687 // span:21-37,47-69 // numtm:2 S0003687 // SNA3 SGDID:S0003687, Chr X from 136691-136290, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024024 // cdna:Genscan chromosome:SGD1:X:136290:136691:-1 // ensembl // 11 // --- /// GENEFINDER00000024458 // cdna:GeneFinder chromosome:SGD1:X:136290:136691:-1 // ensembl // 11 // --- /// YJL151C // cdna:known chromosome:SGD1:X:136290:136691:-1 gene:YJL151C // ensembl // 11 // --- YJL152W // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene 2.78920847631359 5.08842993819907 1.32424794157819 4.4276452352081 1.20379917630203 Max fold change at or above threshold 4 5.08842993819907 Max fold change at or above threshold -0.906230691963937 1.01352111958195 0.703244888905608 -0.810535316523623 2009.67822265625 1460.74711051474 0.726856217103267 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774869_at SPAC1705.03c.S1 --- 5.08664381987014 --- --- --- --- 3.28382062911987 4.02638912200928 4.54392004013062 5.72071266174316 0.432372987270355 0.533936023712158 0.533936023712158 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1705.03c /DEF=involved in cell wall biosynthesis (predicted) --- --- --- --- --- --- SPAC1705.03c // ||SPAC23H4.19|GPI anchored protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -5.08664381987014 1.22612943176754 -1.21652353534353 1.38372967141889 1.74209048174365 Max fold change at or above threshold 4 5.08664381987014 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780100_at SPAC23G3.07c.S1 --- 5.07747861917303 --- --- --- --- 2.35392999649048 11.9520292282104 6.04787302017212 6.93895769119263 0.601073980331421 0.0676269978284836 0.274170011281967 0.296142578125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23G3.07c /DEF=hypothetical protein --- --- --- --- --- --- SPAC23G3.07c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.79533009800976 5.07747861917303 1.30249694675369 2.56926630324139 2.94781820255405 Max fold change at or above threshold 3 5.07747861917303 Max fold change at or above threshold APAPAA No 4 0 AAAA 4 0 0 No No x = 1
1774366_at SPAPJ698.02c.S1 --- 5.07712134098021 --- --- --- --- 12.1863651275635 6.734046459198 13.333664894104 2.40025091171265 0.219482004642487 0.219482004642487 0.149657994508743 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPJ698.02c /GEN=rps002 /DEF=40S ribosomal protein S0B --- --- --- --- --- --- SPAPJ698.02c // |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein S0B|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.13694328843131 -1.80966454588655 -1.78086281118478 1.09414618342146 -5.07712134098021 Max fold change at or above threshold 3 5.07712134098021 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775435_at SPBC16A3.10.S1 --- 5.0730291110177 --- --- --- --- 1.65853595733643 8.4138011932373 0.913772583007813 2.82246541976929 0.5 0.149657994508743 0.696289002895355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16A3.10 /DEF=membrane bound O-acyltransferase (MBOAT) (predicted) --- --- --- --- --- --- SPBC16A3.10 // |||membrane bound O-acyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.14761996518406 5.0730291110177 3.75182781218572 -1.81504237288136 1.70178126514791 Max fold change at or above threshold 2 5.0730291110177 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771967_at YMR242W-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 5.0725199223038 8.30614805221558 8.72189426422119 --- --- --- --- 7.8762378692627 8.04827117919922 8.56402492523193 9.56755065917969 0.0676269978284836 0.149657994508743 0.219482004642487 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR242W-A /GEN=RPL20A /DB_XREF=GI:33438859 /SEG=NC_001145:+754296,754385 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ymr242w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028694 // YMR242W-A SGDID:S0028694, Chr XIII from 754296-754385, Uncharacterized ORF // sgd // 11 // --- /// YMR242W-A // cdna:known chromosome:SGD1:XIII:754296:754385:1 gene:YMR242W-A // ensembl // 11 // --- --- No cerevisiae_gene 5.0725199223038 1.02184206632559 -1.72593181606827 1.08732431236661 1.21473612376759 Max fold change at or above threshold 4 5.0725199223038 Max fold change at or above threshold -0.838386881822699 -0.612243499289921 0.06573157847162 1.384898802641 8.51402115821838 0.760726703606231 0.0893498723422738 APAAAM No 4 0 AAAM 3 0 1 No No x = 1
1780198_at SPCC584.01c.S1 --- 5.07251331875081 --- --- --- --- 2.2091588973999 11.2059879302979 5.1845703125 3.16971039772034 0.533936023712158 0.274170011281967 0.533936023712158 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC584.01c /DEF=sulfite reductase NADPH flavoprotein subunit (predicted) --- --- --- --- --- --- SPCC584.01c // |||sulfite reductase NADPH flavoprotein subunit |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.51427893981837 5.07251331875081 4.47075055116166 2.34685260467323 1.43480416979103 Max fold change at or above threshold 3 5.07251331875081 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776037_at SPAC27E2.09.S1 --- 5.07243813061889 --- --- --- --- 6.55891275405884 5.19425344467163 1.29304933547974 4.34288358688354 0.24609400331974 0.432372987270355 0.601073980331421 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27E2.09 /GEN=mak2 /DEF=histidine kinase (PMID 11758939) --- --- --- --- --- --- SPAC27E2.09 // |mak2||histidine kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.54839118764807 -1.2627248215597 -1.22473796643648 -5.07243813061889 -1.5102667669629 Max fold change at or above threshold 3 5.07243813061889 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777958_at SPBC2D10.09.S1 --- 5.06947815215608 --- --- --- --- 1.64132976531982 0.323767006397247 2.28570199012756 3.04945015907288 0.850341975688934 0.985840022563934 0.533936023712158 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2D10.09 /DEF=3-hydroxyisobutyryl-coA hydrolase (predicted) --- --- --- --- --- --- SPBC2D10.09 // |||3-hydroxyisobutyryl-coA hydrolase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.65243357128736 -5.06947815215608 -3.68981332349989 1.39259156716882 1.85791437132603 Max fold change at or above threshold 1 5.06947815215608 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778693_at SPBC337.11.S1 --- 5.0687807923624 --- --- --- --- 1.16814398765564 1.32485139369965 3.40577793121338 2.53353691101074 0.753906011581421 0.850341975688934 0.466064006090164 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC337.11 /DEF=zinc binding dehydrogenase (predicted) --- --- --- --- --- --- SPBC337.11 // |||mitochondrial peptidase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.70235444165432 1.13415076197799 5.0687807923624 2.91554634291999 2.16885669727695 Max fold change at or above threshold 2 5.0687807923624 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776071_at SPAC227.15.S1 --- 5.06691181436538 --- --- --- --- 9.79323863983154 1.93278253078461 9.49036312103271 8.5110912322998 0.194580003619194 0.533936023712158 0.129638999700546 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC227.15 /DEF=protein phosphatase regulatory subunit (predicted) --- --- --- --- --- --- SPAC227.15 // |||protein phosphatase regulatory subunit |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.16216926614238 -5.06691181436538 -1.63261930105018 -1.03191400739215 -1.15064430312601 Max fold change at or above threshold 3 5.06691181436538 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779655_at SPCC16A11.12c.S1 --- 5.06581711959009 --- --- --- --- 0.488008350133896 2.47216105461121 0.357506036758423 0.592659711837769 0.962401986122131 0.696289002895355 0.943848013877869 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16A11.12c /GEN=ubp1 /DEF=ubiquitin C-terminal hydrolase activity --- --- --- --- --- --- SPCC16A11.12c // |ubp1||ubiquitin C-terminal hydrolase activity|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.40445245724182 5.06581711959009 -1.56625853642999 -1.365035272016 1.21444584232044 Max fold change at or above threshold 0 5.06581711959009 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772340_at SPAC23A1.12c.S1 --- 5.0636863797386 --- --- --- --- 2.0382559299469 9.73667812347412 10.3210887908936 6.98583984375 0.753906011581421 0.567627012729645 0.398925989866257 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23A1.12c /DEF=phenylalanine-tRNA ligase (beta subunit) (predicted) --- --- --- --- --- --- SPAC23A1.12c // |||phenylalanine-tRNA ligase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.95338472686779 4.7769654342317 2.56801065379664 5.0636863797386 3.4273614716931 Max fold change at or above threshold 3 5.0636863797386 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775582_at SPAC3G6.04.S1 --- 5.0630244927204 --- --- --- --- 0.660518407821655 3.34422087669373 0.644470512866974 0.256386458873749 0.398925989866257 0.466064006090164 0.567627012729645 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G6.04 /GEN=rnp24 /DEF=RNA-binding protein --- --- --- --- --- --- SPAC3G6.04 // |rnp24||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.66813183372481 5.0630244927204 1.11311581477865 -1.0249008986979 -2.57626089428893 Max fold change at or above threshold 1 5.0630244927204 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775893_at YMR232W.S1 Cytoplasmic protein localized to the shmoo tip; required for the alignment of parental nuclei before nuclear fusion during mating 5.06270065971582 92.2317523956299 304.226104736328 FUS2 31385 // regulation of termination of mating projection growth // inferred from mutant phenotype /// 45026 // plasma membrane fusion // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay --- 286.650299072266 127.843467712402 56.6200370788574 321.801910400391 0.000244141003349796 0.00122069998178631 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR232W /GEN=FUS2 /DB_XREF=GI:6323888 /SEG=NC_001145:+736925,738958 /DEF=Cytoplasmic protein localized to the shmoo tip; required for the alignment of parental nuclei before nuclear fusion during mating /NOTE=Fus2p; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 7559752]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: plasma membrane fusion [goid GO:0045026] [evidence IMP] [pmid 7559752] --- --- --- --- scop // a.3.1.Di-heme cytochrome c peroxidase // All alpha proteins; Cytochrome c; Cytochrome c; Di-heme cytochrome c peroxidase // 5.0 --- S0004845 // FUS2 SGDID:S0004845, Chr XIII from 736925-738958, Verified ORF // sgd // 11 // --- /// GENSCAN00000018910 // cdna:Genscan chromosome:SGD1:XIII:736925:738958:1 // ensembl // 11 // --- /// YMR232W // cdna:known chromosome:SGD1:XIII:736925:738958:1 gene:YMR232W // ensembl // 11 // --- --- No cerevisiae_gene 1.12659772636029 -2.24219746383223 -1.76141667830886 -5.06270065971582 1.12262890163343 Max fold change at or above threshold 4 5.06270065971582 Max fold change at or above threshold 0.69833569201486 -0.555891400817776 -1.11840093255606 0.975956641358981 198.228928565979 126.617286667921 0.638742728338854 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779069_at SPBC244.01c.S1 --- 5.0610945647878 --- --- --- --- 0.643243730068207 0.916608035564423 0.293937116861343 0.127095773816109 0.828612983226776 0.567627012729645 0.780517995357513 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC244.01c /GEN=sid4 /DEF=SIN component (PMID 9649519) --- --- --- --- --- --- SPBC244.01c // |sid4||SIN component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.10462039249926 1.42497780035451 -1.48261337861471 -2.18837191075681 -5.0610945647878 Max fold change at or above threshold 0 5.0610945647878 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769788_at YML023C.S1 Protein required for cell viability 5.05813896046538 125.941310882568 635.352203369141 --- 6281 // DNA repair // inferred from physical interaction 5634 // nucleus // inferred from direct assay --- 577.295959472656 114.13208770752 137.750534057617 693.408447265625 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML023C /GEN=RPS17A /DB_XREF=GI:6323618 /SEG=NC_001145:-226994,228664 /DEF=Protein required for cell viability /NOTE=Yml023cp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA repair [goid GO:0006281] [evidence IPI] [pmid 14690591] --- --- --- --- --- --- S0004485 // YML023C SGDID:S0004485, Chr XIII from 228664-226994, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018697 // cdna:Genscan chromosome:SGD1:XIII:226994:228664:-1 // ensembl // 11 // --- /// YML023C // cdna:known chromosome:SGD1:XIII:226994:228664:-1 gene:YML023C // ensembl // 11 // --- --- No cerevisiae_gene 1.23650162601205 -5.05813896046538 -1.02530887992382 -4.19088000944657 1.20113164813943 Max fold change at or above threshold 4 5.05813896046538 Max fold change at or above threshold 0.659763644249832 -0.894164265316379 -0.81492370878476 1.04932432985131 380.646757125854 298.060076605762 0.783035901464973 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778949_at SPAC1782.03.S1 --- 5.05678442412417 --- --- --- --- 1.28307569026947 2.13879156112671 2.33824110031128 0.253733515739441 0.79931640625 0.398925989866257 0.334473013877869 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1782.03 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC1782.03 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.88129926558216 1.66692548019324 3.43487203967512 1.8223719130866 -5.05678442412417 Max fold change at or above threshold 0 5.05678442412417 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769490_at SPBC1683.07.S1 --- 5.05576910006721 --- --- --- --- 1.04186367988586 5.26742219924927 1.37207889556885 2.69280123710632 0.633789002895355 0.219482004642487 0.696289002895355 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1683.07 /DEF=alpha-glucosidase (predicted) --- --- --- --- --- --- SPBC1683.07 // |mal1||alpha-glucosidase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.01637534374411 5.05576910006721 2.82883471059818 1.31694666208074 2.58460035520321 Max fold change at or above threshold 2 5.05576910006721 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772179_at SPCC1450.16c.S1 --- 5.04989558050931 --- --- --- --- 0.511368334293365 2.58235669136047 2.25718283653259 1.40596604347229 0.969726979732513 0.888427972793579 0.805419981479645 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1450.16c /DEF=phospholipase (predicted) --- --- --- --- --- --- SPCC1450.16c // |||triacylglycerol lipase activity|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.136701938623 5.04989558050931 2.96044624427272 4.41400588413767 2.74941944814617 Max fold change at or above threshold 1 5.04989558050931 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777531_at YIL067C.S1 Hypothetical protein 5.04725704046486 92.9261016845703 345.589111328125 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 335.7412109375 66.5195388793945 119.332664489746 355.43701171875 0.000244141003349796 0.00292969006113708 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL067C /GEN=SEC6 /DB_XREF=GI:6322122 /SEG=NC_001141:-235721,237757 /DEF=Hypothetical ORF /NOTE=Yil067cp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001329 // span:116-138,317-334,339-361,376-395,408-425,445-467,479-501,516-535 // numtm:8 S0001329 // YIL067C SGDID:S0001329, Chr IX from 237757-235721, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016426 // cdna:Genscan chromosome:SGD1:IX:235721:237757:-1 // ensembl // 11 // --- /// GENEFINDER00000019063 // cdna:GeneFinder chromosome:SGD1:IX:235721:237628:-1 // ensembl // 11 // --- /// YIL067C // cdna:known chromosome:SGD1:IX:235721:237757:-1 gene:YIL067C // ensembl // 11 // --- --- No cerevisiae_gene -1.98650865339778 -5.04725704046486 1.0677945180178 -2.81348960381547 1.05866363776509 Max fold change at or above threshold 4 5.04725704046486 Max fold change at or above threshold 0.788762680575133 -1.03425789608449 -0.676636557618838 0.922131773128194 219.257606506348 147.678899242821 0.673540597272485 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771427_at SPAC17A5.16.S1 --- 5.04578277963257 --- --- --- --- 0.5022252202034 2.53411936759949 1.23557806015015 1.19908571243286 0.953857004642487 0.696289002895355 0.919434010982513 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A5.16 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC17A5.16 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.22002931185965 5.04578277963257 1.84900250310321 2.46020711514595 2.3875457945884 Max fold change at or above threshold 1 5.04578277963257 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775897_at SPBC13E7.02.S1 --- 5.04573641586392 --- --- --- --- 1.66641008853912 3.27987265586853 6.87228631973267 8.40826606750488 0.780517995357513 0.850341975688934 0.633789002895355 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13E7.02 /GEN=cwf24 /DEF=acetyltransferase --- --- --- --- --- --- SPBC13E7.02 // |cwf24||GCN5-related N acetyltransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.11124862032751 1.96822659585785 -1.01941554143215 4.12400666978519 5.04573641586392 Max fold change at or above threshold 3 5.04573641586392 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773983_at YLR445W.S1 Hypothetical protein 5.04568056339579 17.8746638298035 7.24116897583008 --- --- --- --- 5.54130554199219 27.9596576690674 7.78966999053955 8.94103240966797 0.334473013877869 0.111571997404099 0.194580003619194 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR445W /GEN=ECM7 /DB_XREF=GI:42742290 /SEG=NC_001144:+1024185,1024833 /DEF=Hypothetical ORF /NOTE=Ylr445wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004437 // YLR445W SGDID:S0004437, Chr XII from 1024185-1024568,1024651-1024833, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YLR445W // cdna:known chromosome:SGD1:XII:1024185:1024833:1 gene:YLR445W // ensembl // 11 // --- GENEFINDER00000024654 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 1.86153983836103 5.04568056339579 1.73761307155347 1.40574634109402 1.61352452809406 Max fold change at or above threshold 4 5.04568056339579 Max fold change at or above threshold -0.676989284712096 1.48601853658084 -0.460058537092539 -0.348970714776205 12.5579164028168 10.3644341487747 0.825330717000942 APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774019_at YMR175W.S1 Protein of unknown function whose expression is induced by osmotic stress 5.03976220648281 2307.02770996094 4053.68090820313 SIP18 6970 // response to osmotic stress // inferred from expression pattern /// 9269 // response to dessication // inferred from expression pattern /// 9269 // response to dessication // inferred from sequence similarity 5625 // soluble fraction // inferred from direct assay 5543 // phospholipid binding // inferred from direct assay 4271.68017578125 2473.62744140625 2140.42797851563 3835.681640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR175W /GEN=SIP18 /DB_XREF=GI:6323829 /SEG=NC_001145:+611015,611254 /DEF=Salt-Induced Protein /NOTE=Sip18p; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 11746603]; go_function: phospholipid binding [goid GO:0005543] [evidence IDA] [pmid 12082171]; go_process: response to dessication [goid GO:0009269] [evidence IEP,ISS] [pmid 10681550]; go_process: response to osmotic stress [goid GO:0006970] [evidence IEP] [pmid 8801420] --- --- --- --- --- --- S0004787 // SIP18 SGDID:S0004787, Chr XIII from 611015-611254, Verified ORF // sgd // 11 // --- /// GENSCAN00000018860 // cdna:Genscan chromosome:SGD1:XIII:611015:611254:1 // ensembl // 11 // --- /// GENEFINDER00000021940 // cdna:GeneFinder chromosome:SGD1:XIII:611015:611254:1 // ensembl // 11 // --- /// YMR175W // cdna:known chromosome:SGD1:XIII:611015:611254:1 gene:YMR175W // ensembl // 11 // --- --- No cerevisiae_gene -5.03976220648281 -1.72688906351751 1.21030974688975 -1.99571310908748 -1.11366911438594 Max fold change at or above threshold 4 5.03976220648281 Max fold change at or above threshold 1.05644796550473 -0.684140442654224 -1.00669111740616 0.634383594555651 3180.35430908203 1033.0143105324 0.3248110776785 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779766_at SPCC550.15c.S1 --- 5.03599628349602 --- --- --- --- 1.38695120811462 1.06140160560608 6.98468112945557 0.372836470603943 0.888427972793579 0.919434010982513 0.533936023712158 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC550.15c /DEF=zinc finger protein --- --- --- --- --- --- SPCC550.15c // |||zinc finger protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.63229936934344 -1.30671670439263 1.44141856309505 5.03599628349602 -3.71999875942382 Max fold change at or above threshold 1 5.03599628349602 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776396_at SPAC22G7.08.S1 --- 5.03483780157394 --- --- --- --- 4.40141582489014 1.34942364692688 6.98395729064941 4.32751035690308 0.274170011281967 0.665526986122131 0.030273400247097 0.219482004642487 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22G7.08 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPAC22G7.08 // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.12043773004055 -3.26170053038105 -5.03483780157394 1.58675243796665 -1.01707805687147 Max fold change at or above threshold 3 5.03483780157394 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1775396_at YCR075C.S1 Protein with similarity to human cystinosin, which is a H(+)-driven transporter involved in L-cystine export from lysosomes and implicated in the disease cystinosis; contains seven transmembrane domains 5.03452698928381 150.221740722656 568.415740966797 ERS1 15811 // L-cystine transport // inferred from sequence similarity 5768 // endosome // inferred from direct assay /// 5773 // vacuole // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity 15184 // L-cystine transporter activity // inferred from sequence similarity 544.044494628906 108.062683105469 192.380798339844 592.786987304688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR075C /GEN=ERS1 /DB_XREF=GI:6319919 /SEG=NC_001135:-248029,248811 /DEF=Protein with similarity to human cystinosin, which is a H(+)-driven transporter involved in L-cystine export from lysosomes and implicated in the disease cystinosis; contains seven transmembrane domains /NOTE=Ers1p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 11689434]; go_function: L-cystine transporter activity [goid GO:0015184] [evidence ISS] [pmid 11689434]; go_process: L-cystine transport [goid GO:0015811] [evidence ISS] [pmid 11689434] --- --- --- --- --- S0000671 // span:7-25,40-62,83-105,118-140,185-207,227-246 // numtm:6 S0000671 // ERS1 SGDID:S0000671, Chr III from 248811-248029, reverse complement, Verified ORF // sgd // 11 // --- /// YCR075C // cdna:known chromosome:SGD1:III:248029:248811:-1 gene:YCR075C // ensembl // 11 // --- --- No cerevisiae_gene -2.37830708053726 -5.03452698928381 1.07781345973159 -2.82795632060869 1.08959284241821 Max fold change at or above threshold 4 5.03452698928381 Max fold change at or above threshold 0.754918308572586 -1.02680754708811 -0.682224901567389 0.954114140082917 359.318740844727 244.696348845298 0.681000796869204 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776540_at SPBC29A3.02c.S1 --- 5.03285003506151 --- --- --- --- 1.09497153759003 2.46235609054565 5.51082754135132 0.454198807477951 0.780517995357513 0.753906011581421 0.633789002895355 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A3.02c /GEN=his7 /DEF=phosphoribosyl-AMP cyclohydrolase (PMID 8299169) --- --- --- --- --- --- SPBC29A3.02c // |his7||phosphoribosyl-AMP cyclohydrolase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.98966118315084 2.24878547616422 -2.85780418290433 5.03285003506151 -2.41077589716741 Max fold change at or above threshold 1 5.03285003506151 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771537_at SPBC16G5.01.S1 --- 5.03103445585199 --- --- --- --- 1.28331136703491 6.45638370513916 1.83551406860352 0.546727895736694 0.919434010982513 0.5 0.753906011581421 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16G5.01 /GEN=rpn12 /DEF=19S proteasome regulatory subunit --- --- --- --- --- --- X92682 // S.pombe mRNA for 26S protease regulatory subunit. // gb // 11 // --- /// SPBC16G5.01 // |rpn12|mts3, SPBC342.07|19S proteasome regulatory subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.92773540933599 5.03103445585199 -4.88870108464519 1.43029518459302 -2.34725789015338 Max fold change at or above threshold 1 5.03103445585199 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772055_at YDR247W.S1 Cytoplasmic serine/threonine protein kinase; identified as a high-copy suppressor of the synthetic lethality of a sis2 sit4 double mutant, suggesting a role in G1/S phase progression; homolog of Sks1p 5.03071059392684 3873.8837890625 916.667816162109 VHS1 82 // G1/S transition of mitotic cell cycle // inferred from genetic interaction /// 6468 // protein amino acid phosphorylation // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay 4672 // protein kinase activity // inferred from sequence similarity /// 4674 // protein serine/threonine kinase activity // inferred from sequence similarity 895.351135253906 4504.25244140625 3243.51513671875 937.984497070313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR247W /GEN=VHS1 /DB_XREF=GI:6320453 /SEG=NC_001136:+956005,957390 /DEF=Gene whose overexpression suppresses the synthetic lethality of the hal3 sit4 double mutation /NOTE=Vhs1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 9020587]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence ISS] [pmid 12518319]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IGI] [pmid 12518319]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence ISS] [pmid 12518319] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 7.0E-48 /// hanks // 2.2.12 // CaMK Group; CaMK II KIN1/SNF1/Nim1; YCL24 // 2.0E-52 --- --- S0002655 // VHS1 SGDID:S0002655, Chr IV from 956007-957392, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023567 // cdna:GeneFinder chromosome:SGD1:IV:956010:957392:1 // ensembl // 11 // --- /// GENSCAN00000025290 // cdna:Genscan chromosome:SGD1:IV:956010:957392:1 // ensembl // 11 // --- /// YDR247W // cdna:known chromosome:SGD1:IV:956007:957392:1 gene:YDR247W // ensembl // 11 // --- --- No cerevisiae_gene 1.40947928934949 5.03071059392684 1.43585263315903 3.62261799757359 1.04761635981432 Max fold change at or above threshold 4 5.03071059392684 Max fold change at or above threshold -0.841082291710418 1.18260799566989 0.475649943343918 -0.817175647303393 2395.2758026123 1783.32688981974 0.744518392360008 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772213_at SPAC110.02.S1 --- 5.02917764552698 --- --- --- --- 0.603889942169189 1.04631292819977 0.492899805307388 3.03706979751587 0.805419981479645 0.870360970497131 0.943848013877869 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC110.02 /GEN=pds5 /DEF=cohesin-associated protein (PMID 11598020) --- --- --- --- --- --- AB067651 // Schizosaccharomyces pombe mRNA for Pds5, complete cds. // gb // 11 // --- /// AF049529 // Schizosaccharomyces pombe unknown mRNA, partial cds. // gb // 11 // --- /// SPAC110.02 // |pds5||cohesin-associated protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.13344485306233 1.73262188212869 -2.36601939854402 -1.22517788740571 5.02917764552698 Max fold change at or above threshold 1 5.02917764552698 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772818_at SPACUNK4.17.S1 --- 5.02463831183849 --- --- --- --- 11.4685010910034 11.3092908859253 13.4066591262817 2.28245306015015 0.014160200022161 0.274170011281967 0.0676269978284836 0.334473013877869 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPACUNK4.17 /DEF=dehydrogenase (predicted) --- --- --- --- --- --- SPACUNK4.17 // |||dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.26945870425556 -1.0140778238604 -1.34029176903184 1.16899837388503 -5.02463831183849 Max fold change at or above threshold 3 5.02463831183849 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1771373_at YHR139C.S1 Protein required for spore wall maturation; expressed during sporulation; may be a component of the spore wall 5.02191110016357 991.715179443359 2716.44323730469 SPS100 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 5619 // spore wall (sensu Fungi) // inferred from sequence similarity --- 2700.28564453125 1128.23266601563 855.197692871094 2732.60083007813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR139C /GEN=SPS100 /DB_XREF=GI:6321931 /SEG=NC_001140:-378220,379200 /DEF=involved in spore development /NOTE=Sps100p; go_component: spore wall (sensu Fungi) [goid GO:0005619] [evidence ISS] [pmid 3280971]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence IMP] [pmid 3280971] --- --- --- --- --- --- S0001181 // SPS100 SGDID:S0001181, Chr VIII from 379201-378221, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016670 // cdna:Genscan chromosome:SGD1:VIII:378221:379201:-1 // ensembl // 11 // --- /// GENEFINDER00000020135 // cdna:GeneFinder chromosome:SGD1:VIII:378221:379201:-1 // ensembl // 11 // --- /// YHR139C // cdna:known chromosome:SGD1:VIII:378221:379201:-1 gene:YHR139C // ensembl // 11 // --- --- No cerevisiae_gene -5.02191110016357 -2.39337658434174 1.14654970855405 -3.15749874799799 1.01196732116557 Max fold change at or above threshold 4 5.02191110016357 Max fold change at or above threshold 0.844451370812718 -0.724341108155239 -0.996809796054552 0.876699533397073 1854.07920837402 1002.07834980814 0.540472243732743 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779325_at SPCC16A11.01.S1 --- 5.02073663061419 --- --- --- --- 11.0947675704956 2.20978879928589 7.97359466552734 10.8095693588257 0.0461426004767418 0.533936023712158 0.171387001872063 0.0952147990465164 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16A11.01 /DEF=conserved fungal protein --- --- --- --- --- --- SPCC16A11.01 // ||SPCC63.15|conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.59180182206755 -5.02073663061419 -1.81319731984794 -1.3914386215871 -1.02638386435229 Max fold change at or above threshold 3 5.02073663061419 Max fold change at or above threshold PMAAAA No 4 0 PAAA 3 1 0 No No x = 1
1773401_at SPAC3H8.08c.S1 --- 5.0195060073816 --- --- --- --- 1.99617731571198 10.0198240280151 1.37946772575378 1.03404569625854 0.850341975688934 0.466064006090164 0.919434010982513 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H8.08c /DEF=zinc finger protein --- --- --- --- --- --- SPAC3H8.08c // |||transcription factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.25752401486544 5.0195060073816 -2.43894609044936 -1.44706344225719 -1.93045367621052 Max fold change at or above threshold 1 5.0195060073816 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777346_at SPAC8F11.07c.S1 --- 5.01824172278796 --- --- --- --- 4.2294397354126 1.35562610626221 0.842813074588776 2.06293392181396 0.633789002895355 0.780517995357513 0.805419981479645 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8F11.07c /GEN=cdc24 /DEF=involved in DNA replication (required) --- --- --- --- --- --- AB015436 // Schizosaccharomyces pombe mRNA for Cdc24, complete cds. // gb // 11 // --- /// SPAC8F11.07c // |cdc24||DNA replication protein Cdc24|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.80533854739256 -3.11991611542079 -3.52748354280362 -5.01824172278796 -2.05020611212481 Max fold change at or above threshold 1 5.01824172278796 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771682_at YOR344C.S1 Serine-rich protein that contains a basic-helix-loop-helix (bHLH) DNA binding motif; binds E-boxes of glycolytic genes and contributes to their activation; may function as a transcriptional activator in Ty1-mediated gene expression 5.01768144983524 1086.35797119141 261.83464050293 TYE7 83 // G1/S-specific transcription in mitotic cell cycle // inferred from physical interaction /// 6350 // transcription // inferred from genetic interaction /// 6350 // transcription // inferred from direct assay /// 6350 // transcription // inferred from physical interaction /// 45821 // positive regulation of glycolysis // inferred from genetic interaction /// 45821 // positive regulation of glycolysis // inferred from mutant phenotype 5634 // nucleus // inferred from curator 3700 // transcription factor activity // inferred from genetic interaction /// 3700 // transcription factor activity // inferred from physical interaction /// 3700 // transcription factor activity // inferred from direct assay /// 3700 // transcription factor activity // inferred from sequence similarity 241.933807373047 1213.94677734375 958.769165039063 281.735473632813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR344C /GEN=TYE7 /DB_XREF=GI:6324920 /SEG=NC_001147:-977189,978064 /DEF=may be involved in glycolytic gene expression /NOTE=Tye7p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 10606743]; go_function: transcription factor activity [goid GO:0003700] [evidence IGI,IPI,ISS] [pmid 10606743]; go_process: positive regulation of glycolysis [goid GO:0045821] [evidence IGI,IMP] [pmid 10606743]; go_process: transcription [goid GO:0006350] [evidence IGI,IPI] [pmid 10606743] --- --- --- --- --- --- S0005871 // TYE7 SGDID:S0005871, Chr XV from 978064-977189, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017797 // cdna:Genscan chromosome:SGD1:XV:977189:978064:-1 // ensembl // 11 // --- /// GENEFINDER00000022551 // cdna:GeneFinder chromosome:SGD1:XV:977189:978064:-1 // ensembl // 11 // --- /// YOR344C // cdna:known chromosome:SGD1:XV:977189:978064:-1 gene:YOR344C // ensembl // 11 // --- --- No cerevisiae_gene 3.27940141935472 5.01768144983524 2.86223131665012 3.96294001011897 1.16451469388234 Max fold change at or above threshold 4 5.01768144983524 Max fold change at or above threshold -0.886350520023015 1.10721487365318 0.583854308673393 -0.804718662303555 674.096305847168 487.575162096029 0.723301934555583 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771311_at SPCC663.03.S1 --- 5.01680352219743 --- --- --- --- 1.0654262304306 1.0458767414093 1.6112687587738 0.212371528148651 0.780517995357513 0.870360970497131 0.601073980331421 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC663.03 /GEN=pmd1 /DEF=ABC transporter family --- --- --- --- --- --- SPCC663.03 // |pmd1||ABC transporter family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.7783829222743 -1.01869196268287 -1.48211828432376 1.51232315551551 -5.01680352219743 Max fold change at or above threshold 0 5.01680352219743 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777066_at SPBC713.05.S1 --- 5.01574847913662 --- --- --- --- 5.1325421333313 5.3484845161438 1.02328538894653 2.72471022605896 0.633789002895355 0.466064006090164 0.805419981479645 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC713.05 /DEF=WD repeat protein --- --- --- --- --- --- SPBC713.05 // |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.30278404652072 1.04207318268469 1.58798411813164 -5.01574847913662 -1.88370201140803 Max fold change at or above threshold 3 5.01574847913662 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780222_at SPBPB2B2.12c.S1 --- 5.01479320624479 --- --- --- --- 1.34161865711212 1.23160982131958 5.33481407165527 0.91752678155899 0.533936023712158 0.870360970497131 0.366210997104645 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB2B2.12c /DEF=bifunctional enzyme --- --- --- --- --- --- SPBPB2B2.12c // |||bifunctional enzyme|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.01479320624479 -1.08932117452155 -2.18755051305127 3.97640122502369 -1.46221198560825 Max fold change at or above threshold 1 5.01479320624479 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777656_at SPCC1322.13.S1 --- 5.01475262245431 --- --- --- --- 1.5586005449295 7.81599617004395 1.93480539321899 1.84133112430573 0.432372987270355 0.274170011281967 0.533936023712158 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1322.13 /GEN=ade6 /DEF=phosphoribosylaminoimidazole carboxylase --- --- --- --- --- --- SPCC1322.13 // |ade6|min1|phosphoribosylaminoimidazole carboxylase Ade6|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.70948164781048 5.01475262245431 2.15130350409871 1.24137348694851 1.18140028264202 Max fold change at or above threshold 1 5.01475262245431 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772105_at YNL166C.S1 Protein involved in organization of septins at the mother-bud neck, may interact directly with the Cdc11p septin, localizes to bud neck in a septin-dependent manner 5.01417280428329 75.1815338134766 348.766967773438 BNI5 910 // cytokinesis // inferred from genetic interaction /// 921 // septin ring assembly // inferred from genetic interaction /// 921 // septin ring assembly // inferred from mutant phenotype /// 921 // septin ring assembly // inferred from physical interaction 144 // septin ring (sensu Saccharomyces) // inferred from direct assay /// 144 // septin ring (sensu Saccharomyces) // inferred from physical interaction /// 5935 // bud neck // inferred from direct assay --- 325.611480712891 85.4248428344727 64.9382247924805 371.922454833984 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL166C /GEN=BNI5 /DB_XREF=GI:6324163 /SEG=NC_001146:-322219,323565 /DEF=Protein involved in organization of septins at the mother-bud neck, may interact directly with the Cdc11p septin, localizes to bud neck in a septin-dependent manner /NOTE=Bni5p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 12215547]; go_component: septin ring (sensu Saccharomyces) [goid GO:0000144] [evidence IDA,IPI] [pmid 12215547]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cytokinesis [goid GO:0000910] [evidence IGI] [pmid 12215547]; go_process: septin ring assembly [goid GO:0000921] [evidence IGI,IMP,IPI] [pmid 12215547] --- --- --- --- --- --- S0005110 // BNI5 SGDID:S0005110, Chr XIV from 323565-322219, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019906 // cdna:Genscan chromosome:SGD1:XIV:322219:323565:-1 // ensembl // 11 // --- /// GENEFINDER00000020503 // cdna:GeneFinder chromosome:SGD1:XIV:322219:323565:-1 // ensembl // 11 // --- /// YNL166C // cdna:known chromosome:SGD1:XIV:322219:323565:-1 gene:YNL166C // ensembl // 11 // --- --- No cerevisiae_gene -1.04886593778981 -3.81167199035796 1.09067356274632 -5.01417280428329 1.14222770652835 Max fold change at or above threshold 4 5.01417280428329 Max fold change at or above threshold 0.713345533891811 -0.794400347915875 -0.923002897407478 1.00405771143154 211.974250793457 159.301803292243 0.751514878321063 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776331_at SPBC16E9.19.S1 --- 5.01358502281259 --- --- --- --- 3.32530617713928 16.6717052459717 5.50343227386475 2.306072473526 0.567627012729645 0.149657994508743 0.389892578125 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16E9.19 /DEF=dubious --- --- --- --- --- --- SPBC16E9.19 // |||dubious|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.31013787928814 5.01358502281259 4.72167226092134 1.65501520181798 -1.44197817515027 Max fold change at or above threshold 3 5.01358502281259 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777003_at SPBP23A10.15c.S1 --- 5.00980217040985 --- --- --- --- 8.2618579864502 6.17671775817871 5.94351625442505 5.15192317962646 0.171387001872063 0.398925989866257 0.0439453125 0.0375977009534836 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP23A10.15c /GEN=qcr1 /DEF=peptidase family M16 --- --- --- --- --- --- D89152 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0632. // gb // 11 // --- /// SPBP23A10.15c // |qcr1|mas1|peptidase family M16|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -5.00980217040985 -1.33758062289806 -1.24221896582294 -1.39006231879977 -1.60364541519604 Max fold change at or above threshold 4 5.00980217040985 Max fold change at or above threshold AAAAPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1770299_at SPAC31A2.15c.S1 --- 5.00914935171973 --- --- --- --- 1.21038973331451 0.51371955871582 0.345872521400452 0.354336231946945 0.753906011581421 0.962401986122131 0.989257991313934 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31A2.15c /DEF=replication factor C complex (predicted) --- --- --- --- --- --- SPAC31A2.15c // |dcc1||DNA replication factor C complex subunit Dcc1 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.57004610447031 -2.35612935653104 -5.00914935171973 -3.49952557206221 -3.41593555551425 Max fold change at or above threshold 0 5.00914935171973 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777038_at SPAC19B12.04.S1 --- 5.00813502902841 --- --- --- --- 0.99744188785553 0.636511504650116 0.912396192550659 2.32954049110413 0.601073980331421 0.953857004642487 0.696289002895355 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19B12.04 /GEN=rps3001 /DEF=40S ribosomal protein S30 --- --- --- --- --- --- AJ002731 // Schizosaccharomyces pombe mRNA for ribosomal protein S30. // gb // 11 // --- /// SPAC19B12.04 // |rps3001|rps30-1|40S ribosomal protein S30|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 5.00813502902841 -1.56704455546929 -3.25890469528839 -1.09321136585097 2.33551500039022 Max fold change at or above threshold 0 5.00813502902841 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772266_at SPAC2F3.05c.S1 --- 5.0020403298632 --- --- --- --- 19.7223072052002 3.94285249710083 10.9065361022949 6.05895280838013 0.171387001872063 0.466064006090164 0.334473013877869 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F3.05c /DEF=aldoketo reductase --- --- --- --- --- --- SPAC2F3.05c // |||aldo/keto reductase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.99634813271135 -5.0020403298632 -1.17086158151147 -1.80830164776608 -3.25506862801808 Max fold change at or above threshold 4 5.0020403298632 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772700_at YCL050C.S1 Diadenosine 5',5''-P1,P4-tetraphosphate phosphorylase I (AP4A phosphorylase), involved in catabolism of bis(5'-nucleosidyl) tetraphosphates; has similarity to Apa2p 5.00041673758847 3558.24401855469 828.417388916016 APA1 9117 // nucleotide metabolism // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8796 // bis(5'-nucleosyl)-tetraphosphatase activity // traceable author statement 777.40673828125 3887.35766601563 3229.13037109375 879.428039550781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL050C /GEN=APA1 /DB_XREF=GI:10383757 /SEG=NC_001135:-37836,38801 /DEF=Diadenosine 5',5''-P1,P4-tetraphosphate phosphorylase I (AP4A phosphorylase), involved in catabolism of bis(5'-nucleosidyl) tetraphosphates; has similarity to Apa2p /NOTE=Apa1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: bis(5'-nucleosyl)-tetraphosphatase activity [goid GO:0008796] [evidence TAS] [pmid 7642617]; go_process: nucleotide metabolism [goid GO:0009117] [evidence TAS] [pmid 7642617] --- --- --- --- --- --- S0000555 // APA1 SGDID:S0000555, Chr III from 38801-37836, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022427 // cdna:Genscan chromosome:SGD1:III:37836:38681:-1 // ensembl // 11 // --- /// GENEFINDER00000023357 // cdna:GeneFinder chromosome:SGD1:III:37836:38681:-1 // ensembl // 11 // --- /// YCL050C // cdna:known chromosome:SGD1:III:37836:38801:-1 gene:YCL050C // ensembl // 11 // --- --- No cerevisiae_gene 3.40648088188834 5.00041673758847 1.28954508397247 4.15372058419889 1.13123284922264 Max fold change at or above threshold 4 5.00041673758847 Max fold change at or above threshold -0.885310525965461 1.05919522344905 0.64763671685564 -0.821521414339228 2193.33070373535 1599.35290943253 0.729189130808569 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776068_at YPL163C.S1 Cell wall and vacuolar protein, required for wild-type resistance to vanadate 4.99827547310647 209.067535400391 857.025604248047 SVS1 42221 // response to chemical substance // inferred from mutant phenotype 324 // vacuole (sensu Fungi) // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 803.926574707031 160.840789794922 257.294281005859 910.124633789063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL163C /GEN=SVS1 /DB_XREF=GI:6325094 /SEG=NC_001148:-241917,242699 /DEF=involved in vanadate resistance /NOTE=Svs1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 11935221]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to chemical substance [goid GO:0042221] [evidence IMP] [pmid 7489911] --- --- --- --- --- --- S0006084 // SVS1 SGDID:S0006084, Chr XVI from 242699-241917, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017063 // cdna:Genscan chromosome:SGD1:XVI:241917:242699:-1 // ensembl // 11 // --- /// GENEFINDER00000020735 // cdna:GeneFinder chromosome:SGD1:XVI:241917:242699:-1 // ensembl // 11 // --- /// YPL163C // cdna:known chromosome:SGD1:XVI:241917:242699:-1 gene:YPL163C // ensembl // 11 // --- --- No cerevisiae_gene 1.59769952366213 -4.99827547310647 -1.32867691488278 -3.12454117349279 1.13209920212021 Max fold change at or above threshold 4 4.99827547310647 Max fold change at or above threshold 0.715372932304982 -0.982966389105067 -0.728240253565931 0.995833710366016 533.046569824219 378.65565308715 0.710361297723046 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776681_at SPAC30D11.10.S1 --- 4.99733472746306 --- --- --- --- 0.476564764976501 0.354815602302551 2.38155364990234 0.31344473361969 0.995850026607513 0.991943001747131 0.805419981479645 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30D11.10 /GEN=rad22 /DEF=involved in DNA repair (PMID 8290356) --- --- --- --- --- --- SPAC30D11.10 // |rad22||DNA repair protein Rad22|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.20476561260996 -1.34313362175696 2.41629280726615 4.99733472746306 -1.52041082162423 Max fold change at or above threshold 0 4.99733472746306 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776256_at SPBC543.05c.S1 --- 4.99698194495545 --- --- --- --- 0.892631411552429 1.18361806869507 1.77007162570953 4.46046304702759 0.904784977436066 0.888427972793579 0.753906011581421 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC543.05c /DEF=inorganic anion exchanger (predicted) --- --- --- --- --- --- SPBC543.05c // |||inorganic anion exchanger |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.34411810465769 1.32598747184638 1.62024630288591 1.98298155633028 4.99698194495545 Max fold change at or above threshold 1 4.99698194495545 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778122_at SPBC146.01.S1 --- 4.99511995038137 --- --- --- --- 0.862597465515137 4.30877780914307 1.18509829044342 0.803858757019043 0.870360970497131 0.633789002895355 0.780517995357513 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC146.01 /DEF=RNA polymerase II holoenzyme component (predicted) --- --- --- --- --- --- SPBC146.01 // ||SPBP35G2.15|RNA polymerase II holoenzyme component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.31354981215576 4.99511995038137 -1.24275106162505 1.37387175110199 -1.07307093190589 Max fold change at or above threshold 1 4.99511995038137 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776176_at SPCC13B11.03c.S1 --- 4.99491704940957 --- --- --- --- 4.32574224472046 13.1494798660278 8.79943370819092 1.36981117725372 0.432372987270355 0.274170011281967 0.219482004642487 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC13B11.03c /DEF=hydroxyacylglutathione hydrolase (predicted) --- --- --- --- --- --- SPCC13B11.03c // |||hydroxyacylglutathione hydrolase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.38501862012023 3.03982047984405 -4.99491704940957 2.03420204218838 -3.15791133592073 Max fold change at or above threshold 3 4.99491704940957 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771582_at SPBC9B6.09c.S1 --- 4.992571261746 --- --- --- --- 2.48353624343872 4.17632532119751 2.05915641784668 0.497446328401566 0.334473013877869 0.466064006090164 0.665526986122131 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC9B6.09c /DEF=transport ATP binding protein --- --- --- --- --- --- SPBC9B6.09c // |||mitochondrial peptide-transporting ATPase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.48340749201209 1.68160433826202 -3.05974274465525 -1.20609402079121 -4.992571261746 Max fold change at or above threshold 1 4.992571261746 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777445_at YAR068W.S1 putative membrane protein 4.99149973349651 62.4527568817139 12.6132140159607 --- --- --- --- 14.0079145431519 54.9850120544434 69.9205017089844 11.2185134887695 0.171387001872063 0.030273400247097 0.0461426004767418 0.0805663987994194 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR068W /GEN=FLO1 /DB_XREF=GI:6319348 /SEG=NC_001133:+222399,222884 /DEF=putative membrane protein /NOTE=Yar068wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000091 // YAR068W SGDID:S0000091, Chr I from 222397-222882, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018220 // cdna:GeneFinder chromosome:SGD1:I:221040:222962:1 // ensembl // 11 // --- /// GENEFINDER00000020160 // cdna:GeneFinder chromosome:SGD1:VIII:541650:543572:1 // ensembl // 11 // --- /// YAR068W // cdna:known chromosome:SGD1:I:222397:222882:1 gene:YAR068W // ensembl // 11 // --- /// YHR214W-A // cdna:known chromosome:SGD1:VIII:543007:543492:1 gene:YHR214W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.53754860225064 3.92528180301644 -1.65409027564675 4.99149973349651 -1.24864266171937 Max fold change at or above threshold 4 4.99149973349651 Max fold change at or above threshold -0.799198402298476 0.592883729702174 1.10027516402809 -0.893960491431788 37.5329854488373 29.4358332524538 0.784265703898747 AAPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1777614_at YPR154W.S1 Protein that induces appearance of [PIN+] prion when overproduced 4.99095600051863 5328.732421875 1291.84460449219 PIN3 30036 // actin cytoskeleton organization and biogenesis // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1104.36926269531 5511.8583984375 5145.6064453125 1479.31994628906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR154W /GEN=PIN3 /DB_XREF=GI:6325412 /SEG=NC_001148:+834559,835206 /DEF=[PSI+] induction /NOTE=Pin3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence IPI] [pmid 10512884] --- --- --- --- --- --- S0006358 // PIN3 SGDID:S0006358, Chr XVI from 834561-835208, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020797 // cdna:GeneFinder chromosome:SGD1:XVI:834561:835208:1 // ensembl // 11 // --- /// YPR154W // cdna:known chromosome:SGD1:XVI:834561:835208:1 gene:YPR154W // ensembl // 11 // --- --- No cerevisiae_gene 1.90452230923579 4.99095600051863 1.53540773160762 4.65931696863256 1.33951568217197 Max fold change at or above threshold 4 4.99095600051863 Max fold change at or above threshold -0.942498952007385 0.940640646371588 0.784156186700382 -0.782297881064585 3310.28851318359 2340.50048097135 0.70703821484141 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774486_at YLL024C.S1 ATP binding protein involved in protein folding and vacuolar import of proteins; member of heat shock protein 70 (HSP70) family; associated with the chaperonin-containing T-complex; present in the cytoplasm, vacuolar membrane and cell wall /// ATPase involved in protein folding and nuclear localization signal (NLS)-directed nuclear transport; member of heat shock protein 70 (HSP70) family; forms a chaperone complex with Ydj1p; localized to the nucleus, cytoplasm, and cell wall 4.99020360759908 7142.21459960938 1836.19934082031 SSA2 /// SSA1 6457 // protein folding // inferred from mutant phenotype /// 60 // protein-nucleus import, translocation // inferred from direct assay /// 6457 // protein folding // inferred from direct assay /// 6616 // SRP-dependent cotranslational protein-membrane targeting, translocation // inferred from direct assay 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5832 // chaperonin-containing T-complex // inferred from physical interaction /// 9277 // cell wall (sensu Fungi) // inferred from direct assay /// 5634 // nucleus // inferred from direct assay 5524 // ATP binding // inferred from direct assay /// 16887 // ATPase activity // inferred from direct assay /// 51082 // unfolded protein binding // inferred from direct assay 1762.447265625 8794.970703125 5489.45849609375 1909.95141601563 0.00195312988944352 0.00122069998178631 0.00122069998178631 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL024C /GEN=SSA2 /DB_XREF=GI:6323004 /SEG=NC_001144:-95565,97484 /DEF=member of 70 kDa heat shock protein family /NOTE=Ssa2p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 8755907]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 8755907]; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 10745074]; go_function: heat shock protein activity [goid GO:0003773] [evidence IMP,ISS] [pmid 3302682]; go_process: SRP-dependent cotranslational membrane targeting, translocation [goid GO:0006616] [evidence TAS] [pmid 9847145]; go_process: protein folding [goid GO:0006457] [evidence IMP] [pmid 9448096] --- --- --- --- --- --- S0003947 // SSA2 SGDID:S0003947, Chr XII from 97484-95565, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017704 // cdna:Genscan chromosome:SGD1:XII:95565:97484:-1 // ensembl // 11 // --- /// GENEFINDER00000024590 // cdna:GeneFinder chromosome:SGD1:XII:95565:97484:-1 // ensembl // 11 // --- /// YLL024C // cdna:known chromosome:SGD1:XII:95565:97484:-1 gene:YLL024C // ensembl // 11 // --- --- No cerevisiae_gene 2.36612659066705 4.99020360759908 -1.12696703524352 3.11467957263792 1.08369280220042 Max fold change at or above threshold 4 4.99020360759908 Max fold change at or above threshold -0.81443745199029 1.28605950777428 0.298758377100469 -0.770380432884456 4489.20697021484 3348.02838195407 0.745795060055749 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777547_at SPBC21C3.15c.S1 --- 4.98870481092836 --- --- --- --- 5.4711480140686 4.79893779754639 7.2013783454895 1.0967071056366 0.334473013877869 0.219482004642487 0.0952147990465164 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21C3.15c /DEF=aldehyde-dehydrogenase-like --- --- --- --- --- --- SPBC21C3.15c // |||aldehyde dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.2989611439089 -1.1400747925647 -1.68889946408952 1.31624630278175 -4.98870481092836 Max fold change at or above threshold 3 4.98870481092836 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769998_at YLR346C.S1 Protein of unknown function; expression regulated by PDR1 4.98864523372703 98.3142509460449 19.6868453025818 --- --- 5739 // mitochondrion // inferred from direct assay --- 24.4353942871094 121.899513244629 74.7289886474609 14.9382963180542 0.0107421996071935 0.000244141003349796 0.000244141003349796 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR346C /GEN=RPL26A /DB_XREF=GI:6323378 /SEG=NC_001144:-822287,822592 /DEF=Protein of unknown function; expression regulated by PDR1 /NOTE=Ylr346cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004338 // YLR346C SGDID:S0004338, Chr XII from 822592-822287, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YLR346C // cdna:known chromosome:SGD1:XII:822287:822592:-1 gene:YLR346C // ensembl // 11 // --- --- No cerevisiae_gene -1.00488394349356 4.98864523372703 4.74867865452561 3.05822724894124 -1.63575509327507 Max fold change at or above threshold 4 4.98864523372703 Max fold change at or above threshold -0.69880206815558 1.27162538080802 0.317981132622861 -0.890804445275298 59.0005481243134 49.4634395236341 0.838355593229665 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1770007_at SPCC1281.07c.S1 --- 4.9882404307937 --- --- --- --- 7.21280765533447 8.33695125579834 10.3190107345581 6.48907518386841 0.194580003619194 0.303710997104645 0.171387001872063 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1281.07c /DEF=glutathione S-transferase (predicted) --- --- --- --- --- --- SPCC1281.07c // |||glutathione S-transferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.454057997056 1.15585381645835 -4.9882404307937 1.43065103461151 -1.1115309117184 Max fold change at or above threshold 4 4.9882404307937 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1775545_at SPBC216.06c.S1 --- 4.98763158713104 --- --- --- --- 0.936847507953644 0.589875638484955 1.00358438491821 0.187834143638611 0.753906011581421 0.696289002895355 0.805419981479645 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC216.06c /GEN=swi1 /DEF=involved in mating-type switching (PMID 6587363) --- --- --- --- --- --- SPBC216.06c // |swi1||replication fork protection complex subunit Swi1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 3.02344319869335 -1.58821189896883 -2.49647817051813 1.07123558145588 -4.98763158713104 Max fold change at or above threshold 0 4.98763158713104 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772858_at SPAC56E4.04c.S1 --- 4.98624301543666 --- --- --- --- 1.39605963230133 1.70723938941956 2.03594589233398 0.699890196323395 0.805419981479645 0.932372987270355 0.725830018520355 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC56E4.04c /GEN=cut6 /DEF=acetyl-CoA carboxylase --- --- --- --- --- --- SPAC56E4.04c // |cut6||acetyl-CoA carboxylase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.98624301543666 1.22289861401211 -1.40329036986195 1.45835166724063 -1.99468379416514 Max fold change at or above threshold 0 4.98624301543666 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775140_at SPCC61.05.S1 --- 4.98570344263276 --- --- --- --- 0.513186156749725 0.390691608190537 0.424686253070831 0.755180180072784 0.976073980331421 0.943848013877869 0.953857004642487 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC61.05 /DEF=similar to S. pombe SPCC569.06 --- --- --- --- --- --- SPCC61.05 // |||similar to S. pombe SPCC569.06|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.98570344263276 -1.3135325816864 -1.96002006042714 -1.20838890601937 1.47155212614411 Max fold change at or above threshold 0 4.98570344263276 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772347_at YDR270W.S1 copper-transporting P-type ATPase with similarity to human Menkes and Wilsons genes; Cu(2+)-transporting ATPase 4.98543093892166 188.984092712402 846.287261962891 CCC2 6879 // iron ion homeostasis // inferred from mutant phenotype /// 15680 // intracellular copper ion transport // inferred from mutant phenotype 12510 // trans-Golgi network transport vesicle membrane // inferred from direct assay 19829 // cation-transporting ATPase activity // inferred from mutant phenotype /// 19829 // cation-transporting ATPase activity // inferred from direct assay 847.864440917969 170.068435668945 207.899749755859 844.710083007813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR270W /GEN=CCC2 /DB_XREF=GI:6320475 /SEG=NC_001136:+1005667,1008681 /DEF=copper-transporting P-type ATPase with similarity to human Menkes and Wilsons genes /NOTE=Ccc2p; go_component: Golgi trans face [goid GO:0005802] [evidence IDA] [pmid 9325307]; go_function: copper-exporting ATPase activity [goid GO:0004008] [evidence IMP,ISS] [pmid 7708696]; go_process: copper ion transport [goid GO:0006825] [evidence TAS] [pmid 12006573]; go_process: intracellular copper ion transport [goid GO:0015680] [evidence IMP] [pmid 7708696] --- --- --- ec // A1A4_HUMAN // (Q13733) Sodium/potassium-transporting ATPase alpha-4 chain (EC 3.6.3.9) (Sodium pump 4) (Na+/K+ ATPase 4) // 1.0E-119 --- S0002678 // span:262-284,304-326,339-361,371-393,526-548,568-590,902-924,928-950 // numtm:8 S0002678 // CCC2 SGDID:S0002678, Chr IV from 1005669-1008683, Verified ORF // sgd // 11 // --- /// GENSCAN00000025312 // cdna:Genscan chromosome:SGD1:IV:1005669:1008683:1 // ensembl // 11 // --- /// GENEFINDER00000023855 // cdna:GeneFinder chromosome:SGD1:IV:1005699:1008683:1 // ensembl // 11 // --- /// YDR270W // cdna:known chromosome:SGD1:IV:1005669:1008683:1 gene:YDR270W // ensembl // 11 // --- YDR271C // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene -4.04136523757774 -4.98543093892166 -1.14572325733729 -4.07823694792145 -1.00373424915081 Max fold change at or above threshold 4 4.98543093892166 Max fold change at or above threshold 0.869456658684682 -0.915106998352119 -0.815501235416637 0.861151575084074 517.635677337646 379.810494613836 0.733740951874326 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773396_at SPBPJ4664.02.S1 --- 4.98445087096454 --- --- --- --- 9.91104221343994 4.38311958312988 12.5877027511597 6.79091453552246 0.274170011281967 0.601073980331421 0.0461426004767418 0.0805663987994194 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPJ4664.02 /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPBPJ4664.02 // |||glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.98445087096454 -2.26118453431807 -2.83871171283138 1.27006852357969 -1.45945618393465 Max fold change at or above threshold 4 4.98445087096454 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1777883_at SPBC1105.06.S1 --- 4.98405044946675 --- --- --- --- 1.61143362522125 8.03146648406982 0.414464771747589 4.20622444152832 0.5 0.274170011281967 0.696289002895355 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1105.06 /GEN=pmc4 /DEF=RNA polymerase II holoenzyme component (PMID 10625684) --- --- --- --- --- --- SPBC1105.06 // |pmc4||RNA polymerase II holoenzyme component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.7166596203418 4.98405044946675 2.34211050190917 -3.88798695345481 2.61023747779298 Max fold change at or above threshold 2 4.98405044946675 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774305_at SPAC8C9.05.S1 --- 4.97965318081989 --- --- --- --- 1.06587421894073 5.30768394470215 2.65887498855591 1.54233336448669 0.780517995357513 0.466064006090164 0.601073980331421 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8C9.05 /DEF=D-Tyr-tRNA(Tyr) deacylase (predicted) --- --- --- --- --- --- SPAC8C9.05 // |||D-Tyr-tRNA[Tyr] deacylase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.46118461222782 4.97965318081989 -3.22310584380725 2.49454855113983 1.44701254339322 Max fold change at or above threshold 2 4.97965318081989 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772877_at SPBC3H7.03c.S1 --- 4.97793561646218 --- --- --- --- 8.39552021026611 5.9112753868103 6.30347204208374 5.6084189414978 0.0561522990465164 0.219482004642487 0.129638999700546 0.111571997404099 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3H7.03c /DEF=2-oxoglutarate dehydrogenase (lipoamide) (e1 component of oxoglutarate dehydrogenase complex) (predicted) --- --- --- --- --- --- SPBC3H7.03c // |||2-oxoglutarate dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.97793561646218 -1.42025530209586 -1.58028569877094 -1.33188822829946 -1.49694954992502 Max fold change at or above threshold 4 4.97793561646218 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1770733_at SPAC22F3.06c.S1 --- 4.97209704749056 --- --- --- --- 5.22220420837402 3.4741747379303 4.0923638343811 2.03293013572693 0.432372987270355 0.5 0.366210997104645 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F3.06c /DEF=Lon protease homolog --- --- --- --- --- --- SPAC22F3.06c // |||Lon protease homolog|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.97209704749056 -1.50314955415429 -2.2508964890309 -1.27608502560325 -2.5688065303369 Max fold change at or above threshold 3 4.97209704749056 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773217_at SPBC1718.06.S1 --- 4.97131619507735 --- --- --- --- 1.89789056777954 0.722177147865295 2.03896570205688 1.56577920913696 0.5 0.665526986122131 0.398925989866257 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1718.06 /GEN=msp1 /DEF=GTPase --- --- --- --- --- --- SPBC1718.06 // |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.97131619507735 -2.62801249442685 3.23545104285878 1.0743325967642 -1.21210612371436 Max fold change at or above threshold 0 4.97131619507735 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779530_at SPAC22G7.04.S1 --- 4.97075278709751 --- --- --- --- 9.73852062225342 5.93488311767578 2.74935555458069 6.65246105194092 0.0676269978284836 0.398925989866257 0.432372987270355 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22G7.04 /GEN=ubp13 /DEF=WD repeat protein (SMART) --- --- --- --- --- --- SPAC22G7.04 // |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.8638509726473 -1.64089509922265 -4.97075278709751 -3.54211029782165 -1.46389742776654 Max fold change at or above threshold 4 4.97075278709751 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775054_at YGR095C.S1 Protein involved in rRNA processing; component of the exosome 3->5 exonuclease complex 4.9700137837483 178.313896179199 888.854949951172 RRP46 6365 // 35S primary transcript processing // traceable author statement /// 6402 // mRNA catabolism // inferred from physical interaction 176 // nuclear exosome (RNase complex) // inferred from direct assay /// 177 // cytoplasmic exosome (RNase complex) // inferred from direct assay 175 // 3'-5'-exoribonuclease activity // traceable author statement 831.882751464844 167.38037109375 189.247421264648 945.8271484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR095C /GEN=RRP46 /DB_XREF=GI:37362654 /SEG=NC_001139:-675673,676344 /DEF=Ribosomal RNA Processing /NOTE=Rrp46p; go_component: cytoplasmic exosome (RNase complex) [goid GO:0000177] [evidence IDA] [pmid 10465791]; go_component: nuclear exosome (RNase complex) [goid GO:0000176] [evidence IDA] [pmid 10465791]; go_function: 3'-5'-exoribonuclease activity [goid GO:0000175] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: mRNA catabolism [goid GO:0006402] [evidence IPI] [pmid 10465791] --- --- --- --- --- --- S0003327 // RRP46 SGDID:S0003327, Chr VII from 676346-675675, reverse complement, Verified ORF // sgd // 11 // --- /// YGR095C // cdna:known chromosome:SGD1:VII:675675:676346:-1 gene:YGR095C // ensembl // 11 // --- AY389297 // gb // 1 // Cross Hyb Matching Probes No cerevisiae_gene -1.08232197600314 -4.9700137837483 -1.03749850326762 -4.39574154250439 1.13697170276943 Max fold change at or above threshold 4 4.9700137837483 Max fold change at or above threshold 0.722347977314595 -0.886785915446244 -0.833833491791954 0.998271429923604 533.584423065186 412.95654970699 0.773929170073506 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770346_at SPBC20F10.06.S1 --- 4.96885282864862 --- --- --- --- 0.701322376728058 3.48476767539978 0.524382591247559 0.275301665067673 0.828612983226776 0.633789002895355 0.688720703125 0.991943001747131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC20F10.06 /GEN=mad2 /DEF=horma domain protein --- --- --- --- --- --- U72150 // Schizosaccharomyces pombe spindle assembly checkpoint protein Mad2p (mad2) precursor mRNA, complete cds. // gb // 10 // --- /// SPBC20F10.06 // |mad2||horma domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.95301565881184 4.96885282864862 -1.15613377237888 -1.33742498022206 -2.54746870693885 Max fold change at or above threshold 1 4.96885282864862 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772046_at SPBC16D10.10.S1 --- 4.96802957675643 --- --- --- --- 4.92398118972778 2.59881329536438 3.62717580795288 0.991133630275726 0.171387001872063 0.533936023712158 0.24609400331974 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16D10.10 /DEF=tRNA specific adenosine deaminase (predicted) --- --- --- --- --- --- SPBC16D10.10 // |||tRNA specific adenosine deaminase subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.14892092742464 -1.89470370900092 -1.18152309672978 -1.35752482108299 -4.96802957675643 Max fold change at or above threshold 3 4.96802957675643 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770479_at SPAC27E2.03c.S1 --- 4.9613692608224 --- --- --- --- 6.97513818740845 1.50536227226257 1.40588974952698 3.41557550430298 0.633789002895355 0.904784977436066 0.943848013877869 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27E2.03c /DEF=GTP binding (predicted) --- --- --- --- --- --- SPAC27E2.03c // |||GTP binding |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.0931731628648 -4.63352796594587 -1.87090629234877 -4.9613692608224 -2.04215605206827 Max fold change at or above threshold 2 4.9613692608224 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774038_at SPAC7D4.04.S1 --- 4.95953426451767 --- --- --- --- 3.90540218353271 0.787453413009644 6.18240165710449 1.99870777130127 0.398925989866257 0.7744140625 0.194580003619194 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC7D4.04 /GEN=taf1 /DEF=involved in response to nitrogen starvation (required) (PMID 11270572) --- --- --- --- --- --- SPAC7D4.04 // |taf1||Taz1 interacting factor 1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.86386655805406 -4.95953426451767 -1.5091265130587 1.5830384084827 -1.95396357567074 Max fold change at or above threshold 2 4.95953426451767 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773774_at SPAPB21F2.03.S1 --- 4.95949185258416 --- --- --- --- 1.69509196281433 0.798956513404846 1.47649323940277 0.341787427663803 0.753906011581421 0.99975597858429 0.828612983226776 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB21F2.03 /DEF=hypothetical protein --- --- --- --- --- --- SPAPB21F2.03 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.34209324753761 -2.1216323221279 -4.11619336130154 -1.14805264093182 -4.95949185258416 Max fold change at or above threshold 0 4.95949185258416 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776250_at SPCC970.10c.S1 --- 4.95819432511768 --- --- --- --- 3.32869529724121 10.7494516372681 2.79099750518799 2.26109004020691 0.334473013877869 0.219482004642487 0.39111328125 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC970.10c /DEF=zinc finger protein --- --- --- --- --- --- SPCC970.10c // |||zinc finger protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.95819432511768 3.22932881425858 2.5601153452766 -1.19265434349323 -1.47216397315014 Max fold change at or above threshold 3 4.95819432511768 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774467_at YPR186C.S1 Transcription factor IIIA (TFIIIA), essential protein with nine C2H2 Zn-fingers, binds the 5S rRNA gene through the zinc finger domain and directs assembly of a multiprotein initiation complex for RNA polymerase III; also binds DNA 4.95324491838144 63.393159866333 304.854614257813 PZF1 6384 // transcription initiation from RNA polymerase III promoter // inferred from sequence similarity /// 6384 // transcription initiation from RNA polymerase III promoter // inferred from physical interaction 5667 // transcription factor complex // inferred from physical interaction 3709 // RNA polymerase III transcription factor activity // inferred from physical interaction /// 3709 // RNA polymerase III transcription factor activity // inferred from sequence similarity 313.348236083984 63.5251159667969 63.2612037658691 296.360992431641 0.000244141003349796 0.00122069998178631 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR186C /GEN=PZF1 /DB_XREF=GI:6325444 /SEG=NC_001148:-909727,911016 /DEF=Transcription factor IIIA (TFIIIA) with putative Zn-fingers /NOTE=Pzf1p; go_component: transcription factor complex [goid GO:0005667] [evidence IPI] [pmid 8496187]; go_function: RNA polymerase III transcription factor activity [goid GO:0003709] [evidence IPI,ISS] [pmid 1570325]; go_process: transcription initiation from Pol III promoter [goid GO:0006384] [evidence IPI,ISS] [pmid 1570325] --- --- --- --- --- --- S0006390 // PZF1 SGDID:S0006390, Chr XVI from 911018-909729, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017328 // cdna:Genscan chromosome:SGD1:XVI:909729:910988:-1 // ensembl // 11 // --- /// GENEFINDER00000020990 // cdna:GeneFinder chromosome:SGD1:XVI:909729:910988:-1 // ensembl // 11 // --- /// YPR186C // cdna:known chromosome:SGD1:XVI:909729:911018:-1 gene:YPR186C // ensembl // 11 // --- --- No cerevisiae_gene -1.34946267825982 -4.93266688797175 -1.29957184657051 -4.95324491838144 -1.05731943165989 Max fold change at or above threshold 4 4.95324491838144 Max fold change at or above threshold 0.925806725307161 -0.864010182205317 -0.865900938029268 0.804104394927424 184.123887062073 139.58026604207 0.758077989060781 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769945_at YKR092C.S1 Nucleolar, serine-rich protein with a role in preribosome assembly or transport; may function as a chaperone of small nucleolar ribonucleoprotein particles (snoRNPs); immunologically and structurally to rat Nopp140 4.95053683070327 101.245388031006 153.023750305176 SRP40 6913 // nucleocytoplasmic transport // inferred from sequence similarity 5730 // nucleolus // inferred from direct assay 51082 // unfolded protein binding // inferred from sequence similarity 140.615570068359 94.6269760131836 107.863800048828 165.431930541992 0.001953125 0.00122069998178631 0.00122069998178631 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR092C /GEN=SRP40 /DB_XREF=GI:6322945 /SEG=NC_001143:-612305,613525 /DEF=Suppressor of mutant AC40 subunit of RNA polymerase I and III (high serine) /NOTE=Srp40p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 8702624]; go_function: chaperone activity [goid GO:0003754] [evidence ISS] [pmid 8702624]; go_process: nucleocytoplasmic transport [goid GO:0006913] [evidence ISS] [pmid 8702624] --- --- --- --- --- --- S0001800 // SRP40 SGDID:S0001800, Chr XI from 613527-612307, reverse complement, Verified ORF // sgd // 11 // --- /// YKR092C // cdna:known chromosome:SGD1:XI:612307:613527:-1 gene:YKR092C // ensembl // 11 // --- GENSCAN00000018494 // ensembl // 9 // Negative Strand Matching Probes /// GENEFINDER00000023027 // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene 4.95053683070327 -1.48599877109851 1.0174538613809 -1.30364005351847 1.17648373122243 Max fold change at or above threshold 4 4.95053683070327 Max fold change at or above threshold 0.420970910831751 -1.01511387771636 -0.60176787232488 1.19591083920949 127.134569168091 32.0235924939158 0.251887371809754 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779768_at SPAC22H12.05c.S1 --- 4.94952935269686 --- --- --- --- 0.796229660511017 1.62908434867859 0.635810077190399 0.713610351085663 0.870360970497131 0.828612983226776 0.904784977436066 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22H12.05c /DEF=fasciclin domain protein (3) --- --- --- --- --- --- SPAC22H12.05c // |||fasciclin domain protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.94952935269686 2.04599806999534 -1.89594142593746 -1.25230739347432 -1.11577650085885 Max fold change at or above threshold 0 4.94952935269686 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774656_at SPAC25H1.04.S1 --- 4.94922068720607 --- --- --- --- 0.345422863960266 0.633679568767548 0.521030843257904 1.15773522853851 0.77392578125 0.696289002895355 0.601073980331421 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25H1.04 /DEF=sequence orphan --- --- --- --- --- --- SPAC25H1.04 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.31560318424409 1.83450383539301 4.94922068720607 1.50838551126667 3.35164619754785 Max fold change at or above threshold 0 4.94922068720607 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771938_at SPAC23C4.16c.S1 --- 4.94650794634457 --- --- --- --- 1.65048050880432 2.55394172668457 8.1641149520874 1.20623922348022 0.533936023712158 0.633789002895355 0.366210997104645 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C4.16c /DEF=lipase (predicted) --- --- --- --- --- --- SPAC23C4.16c // |||lipase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.36871298681191 1.54739284290897 -1.26007625311988 4.94650794634457 -1.36828622107179 Max fold change at or above threshold 2 4.94650794634457 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774193_at SPCC338.05c.S1 --- 4.94551138360994 --- --- --- --- 3.31390333175659 2.60447812080383 5.30859661102295 2.79442071914673 0.65771484375 0.567627012729645 0.466064006090164 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC338.05c /GEN=spm2 /DEF=ubiquitin conjugating enzyme --- --- --- --- --- --- AF470233 // Schizosaccharomyces pombe ubiquitin conjugating enzyme Spm2 mRNA, complete cds. // gb // 10 // --- /// SPCC338.05c // |spm2|mms2|ubiquitin conjugating enzyme|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -4.94551138360994 -1.27238670399497 -1.17392297278009 1.60191655566761 -1.18589992875822 Max fold change at or above threshold 4 4.94551138360994 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778997_at SPCC70.10.S1 --- 4.94534852886354 --- --- --- --- 1.51541793346405 2.06219816207886 7.49426984786987 0.941078066825867 0.567627012729645 0.753906011581421 0.366210997104645 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC70.10 /DEF=glycoprotein (predicted) --- --- --- --- --- --- D89146 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0574. // gb // 10 // --- /// SPCC70.10 // |||glycoprotein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.00082445170065 1.36081150720246 -1.8753979260526 4.94534852886354 -1.61029991759914 Max fold change at or above threshold 1 4.94534852886354 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770657_at SPCC18B5.10c.S1 --- 4.94528404626467 --- --- --- --- 1.12297666072845 0.635152041912079 5.11451148986816 1.58860003948212 0.725830018520355 0.904784977436066 0.239501953125 0.423828125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18B5.10c /DEF=WD repeat protein --- --- --- --- --- --- SPCC18B5.10c // |||WD repeat protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.94528404626467 -1.76804384875756 1.19534243978187 4.55442367479879 1.41463317541401 Max fold change at or above threshold 1 4.94528404626467 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780010_at SPBC336.07.S1 --- 4.93911675084613 --- --- --- --- 3.42051672935486 2.80746793746948 6.07349300384521 1.8406879901886 0.533936023712158 0.533936023712158 0.398925989866257 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC336.07 /GEN=sfc3 /DEF=transcription factor --- --- --- --- --- --- SPBC336.07 // |sfc3||transcription factor TFIIIC complex|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.93911675084613 -1.21836359507562 1.54072699850495 1.77560687007391 -1.85828165750372 Max fold change at or above threshold 3 4.93911675084613 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777513_at YOL091W.S1 Component of the meiotic outer plaque of the spindle pole body, involved in modifying the meiotic outer plaque that is required prior to prospore membrane formation 4.93757748539002 84.2165832519531 264.781242370605 SPO21 7126 // meiosis // traceable author statement /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 5816 // spindle pole body // inferred from direct assay 5198 // structural molecule activity // inferred from direct assay /// 5198 // structural molecule activity // inferred from mutant phenotype 278.1474609375 112.100387573242 56.3327789306641 251.415023803711 0.000732421991415322 0.00415039015933871 0.0239257998764515 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL091W /GEN=SPO21 /DB_XREF=GI:6324481 /SEG=NC_001147:+145333,147162 /DEF=Component of the meiotic outer plaque of the spindle pole body, involved in modifying the meiotic outer plaque that is required prior to prospore membrane formation /NOTE=Spo21p; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 10899120]; go_function: structural molecule activity [goid GO:0005198] [evidence IDA,IMP] [pmid 12796288]; go_process: meiosis [goid GO:0007126] [evidence TAS] [pmid 11973299]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence IMP] [pmid 10899120] --- --- --- --- --- --- S0005451 // SPO21 SGDID:S0005451, Chr XV from 145333-147162, Verified ORF // sgd // 10 // --- /// GENSCAN00000017393 // cdna:Genscan chromosome:SGD1:XV:145378:147162:1 // ensembl // 10 // --- /// GENEFINDER00000022921 // cdna:GeneFinder chromosome:SGD1:XV:145378:147162:1 // ensembl // 10 // --- /// YOL091W // cdna:known chromosome:SGD1:XV:145333:147162:1 gene:YOL091W // ensembl // 10 // --- --- No cerevisiae_gene -2.18229121834953 -2.4812354975648 -2.31928823327149 -4.93757748539002 -1.10632792237054 Max fold change at or above threshold 4 4.93757748539002 Max fold change at or above threshold 0.96630475904738 -0.581735036188122 -1.10165071861901 0.717080995759755 174.498912811279 107.262793808861 0.614690327181959 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1779335_at SPBC1198.10c.S1 --- 4.93497647671948 --- --- --- --- 1.7057169675827 3.48166036605835 8.41767311096191 1.25597286224365 0.274170011281967 0.398925989866257 0.219482004642487 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1198.10c /DEF=asparagine-tRNA ligase (predicted) --- --- --- --- --- --- SPBC1198.10c // |||asparagine-tRNA ligase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.03917162715626 2.04117120965999 -2.15178819025666 4.93497647671948 -1.35808425393494 Max fold change at or above threshold 2 4.93497647671948 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773289_at SPAC16C9.03.S1 --- 4.93453491186589 --- --- --- --- 6.52045583724976 3.842289686203 11.5865449905396 1.32139217853546 0.805419981479645 0.805419981479645 0.171387001872063 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16C9.03 /DEF=involved in mRNA catabolism, nonsense-mediated --- --- --- --- --- --- SPAC16C9.03 // |||export adaptor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.20336409683454 -1.69702348593433 -1.21424710019466 1.7769532191827 -4.93453491186589 Max fold change at or above threshold 3 4.93453491186589 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773665_at SPBC839.12.S1 --- 4.93392932163654 --- --- --- --- 1.0521559715271 5.19126319885254 3.66773056983948 1.08759272098541 0.633789002895355 0.0952147990465164 0.303710997104645 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC839.12 /GEN=rpc31 /DEF=DNA-directed RNA polymerase III complex --- --- --- --- --- --- SPBC839.12 // |rpc31||DNA-directed RNA polymerase III complex subunit Rpc31|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.04195318352654 4.93392932163654 4.74489368152997 3.4859190738766 1.03368012957896 Max fold change at or above threshold 2 4.93392932163654 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773420_at YMR147W.S1 Hypothetical protein 4.93201202992769 95.1670951843262 501.146530151367 --- --- --- --- 448.063690185547 90.8480529785156 99.4861373901367 554.229370117188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR147W /GEN=TIF34 /DB_XREF=GI:6323796 /SEG=NC_001145:+559198,559869 /DEF=Hypothetical ORF /NOTE=Ymr147wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004755 // YMR147W SGDID:S0004755, Chr XIII from 559198-559869, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018836 // cdna:Genscan chromosome:SGD1:XIII:559198:559869:1 // ensembl // 11 // --- /// GENEFINDER00000022101 // cdna:GeneFinder chromosome:SGD1:XIII:559198:559869:1 // ensembl // 11 // --- /// YMR147W // cdna:known chromosome:SGD1:XIII:559198:559869:1 gene:YMR147W // ensembl // 11 // --- --- No cerevisiae_gene 1.40901357028681 -4.93201202992769 1.1348148510392 -4.50378014404617 1.23694327895143 Max fold change at or above threshold 4 4.93201202992769 Max fold change at or above threshold 0.628825212601861 -0.869613036069538 -0.833378239130558 1.07416606259824 298.156812667847 238.391964115811 0.799552295930213 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776528_at YDL021W.S1 Homolog of Gpm1p phosphoglycerate mutase which converts 3-phosphoglycerate to 2-phosphoglycerate in glycolysis; may be non-functional derivative of a gene duplication event 4.92995548224869 2130.67565917969 511.703140258789 GPM2 --- 5737 // cytoplasm // inferred from direct assay /// 5829 // cytosol // traceable author statement 4619 // phosphoglycerate mutase activity // inferred from mutant phenotype 471.805572509766 1935.37084960938 2325.98046875 551.600708007813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL021W /GEN=GPM2 /DB_XREF=GI:6320183 /SEG=NC_001136:+413950,414885 /DEF=Similar to GPM1 (phosphoglycerate mutase); converts 3-phosphoglycerate to 2-phosphoglycerate in glycolysis /NOTE=Gpm2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: phosphoglycerate mutase activity [goid GO:0004619] [evidence IMP] [pmid 9544241]; go_process: gluconeogenesis [goid GO:0006094] [evidence TAS]; go_process: glycolysis [goid GO:0006096] [evidence TAS] --- --- --- --- --- --- S0002179 // GPM2 SGDID:S0002179, Chr IV from 413950-414885, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023450 // cdna:GeneFinder chromosome:SGD1:IV:413950:414885:1 // ensembl // 11 // --- /// GENSCAN00000025084 // cdna:Genscan chromosome:SGD1:IV:413950:414885:1 // ensembl // 11 // --- /// YDL021W // cdna:known chromosome:SGD1:IV:413950:414885:1 gene:YDL021W // ensembl // 11 // --- --- No cerevisiae_gene 1.59677027190919 4.10205169751215 1.47187710319289 4.92995548224869 1.16912715776878 Max fold change at or above threshold 4 4.92995548224869 Max fold change at or above threshold -0.895239053334693 0.647338932249031 1.05903618202094 -0.811136060935277 1321.18939971924 948.778791592689 0.718124738053689 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778884_at YNL014W.S1 Translational elongation factor EF-3; paralog of YEF3 and member of the ABC superfamily; stimulates EF-1 alpha-dependent binding of aminoacyl-tRNA by the ribosome; normally expressed in zinc deficient cells 4.92906911633491 1076.47186279297 792.507690429688 HEF3 6414 // translational elongation // inferred from genetic interaction 5830 // cytosolic ribosome (sensu Eukaryota) // inferred from physical interaction 3746 // translation elongation factor activity // inferred from genetic interaction /// 3746 // translation elongation factor activity // inferred from sequence similarity /// 16887 // ATPase activity // inferred from direct assay 731.495788574219 1069.36901855469 1083.57470703125 853.519592285156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL014W /GEN=HEF3 /DB_XREF=GI:6324314 /SEG=NC_001146:+606317,609451 /DEF=Translational elongation factor EF-3; paralog of YEF3 and member of the ABC superfamily; stimulates EF-1 alpha-dependent binding of aminoacyl-tRNA by the ribosome; normally expressed in zinc deficient cells /NOTE=Hef3p; go_component: cytosolic ribosome (sensu Eukarya) [goid GO:0005830] [evidence IPI] [pmid 9544245]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 9544245]; go_function: translation elongation factor activity [goid GO:0003746] [evidence IGI,ISS] [pmid 9544245]; go_process: translational elongation [goid GO:0006414] [evidence IGI] [pmid 9544245] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 9.10000038146973 --- S0004959 // HEF3 SGDID:S0004959, Chr XIV from 606318-609452, Verified ORF // sgd // 11 // --- /// GENSCAN00000020026 // cdna:Genscan chromosome:SGD1:XIV:606318:609452:1 // ensembl // 11 // --- /// GENEFINDER00000020672 // cdna:GeneFinder chromosome:SGD1:XIV:606318:609452:1 // ensembl // 11 // --- /// YNL014W // cdna:known chromosome:SGD1:XIV:606318:609452:1 gene:YNL014W // ensembl // 11 // --- YNL013C // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene -4.92906911633491 1.46189360931117 1.67593641526907 1.48131366435243 1.16681408918126 Max fold change at or above threshold 4 4.92906911633491 Max fold change at or above threshold -1.18400945295527 0.786714419538295 0.869572387917698 -0.472277354500726 934.489776611328 171.446256219019 0.183465095616907 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777281_at SPBC21C3.07c.S1 --- 4.92804757679087 --- --- --- --- 0.579058468341827 2.85362768173218 0.280802011489868 1.2886027097702 0.696289002895355 0.398925989866257 0.567627012729645 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21C3.07c /DEF=methyltransferase (predicted) --- --- --- --- --- --- SPBC21C3.07c // |||actin binding methyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.61496899275954 4.92804757679087 4.13906552030064 -2.06215926043222 2.22534127418981 Max fold change at or above threshold 1 4.92804757679087 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775208_at SPAC1D4.06c.S1 --- 4.92588618041555 --- --- --- --- 1.80392110347748 8.88591003417969 4.03726625442505 3.09954047203064 0.828612983226776 0.0952147990465164 0.274170011281967 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1D4.06c /GEN=csk1 /DEF=cyclin-dependent kinase activating kinase (CAK) --- --- --- --- --- --- SPAC1D4.06c // |csk1||cyclin-dependent kinase activating kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.12524391001105 4.92588618041555 3.86527042957598 2.23805034856695 1.71822396559115 Max fold change at or above threshold 3 4.92588618041555 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771418_at SPCC1259.13.S1 --- 4.92556163147401 --- --- --- --- 0.462426155805588 2.27770853042603 2.24223685264587 0.738073289394379 0.995850026607513 0.780517995357513 0.850341975688934 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1259.13 /GEN=chk1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- U37421 // Schizosaccharomyces pombe radiation checkpoint (CHK1) mRNA, complete cds. // gb // 11 // --- /// SPCC1259.13 // |chk1|rad27|chk1 protein kinase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.04411030348241 4.92556163147401 -1.25044188501827 4.84885386454773 1.59608897578163 Max fold change at or above threshold 0 4.92556163147401 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777816_at YDL238C.S1 Guanine deaminase, a catabolic enzyme of the guanine salvage pathway producing xanthine and ammonia from guanine; activity is low in exponentially-growing cultures but expression is increased in post-diauxic and stationary-phase cultures 4.9243859578349 381.223007202148 127.216709136963 GUD1 46098 // guanine metabolism // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay 8892 // guanine deaminase activity // inferred from direct assay /// 16811 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides // inferred from sequence similarity 101.180381774902 264.194763183594 498.251251220703 153.253036499023 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL238C /GEN=ADY3 /DB_XREF=GI:6319963 /SEG=NC_001136:-28985,30454 /DEF=Hypothetical ORF /NOTE=Ydl238cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [goid GO:0016811] [evidence ISS] [pmid 10542258]; go_process: guanine metabolism [goid GO:0046098] [evidence ISS] [pmid 10542258] --- --- --- --- --- --- S0002397 // GUD1 SGDID:S0002397, Chr IV from 30454-28985, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023815 // cdna:GeneFinder chromosome:SGD1:IV:28985:30454:-1 // ensembl // 11 // --- /// GENSCAN00000024924 // cdna:Genscan chromosome:SGD1:IV:28985:30454:-1 // ensembl // 11 // --- /// YDL238C // cdna:known chromosome:SGD1:IV:28985:30454:-1 gene:YDL238C // ensembl // 11 // --- --- No cerevisiae_gene 1.27053340335841 2.61112637202093 2.7619199791282 4.9243859578349 1.5146516924592 Max fold change at or above threshold 4 4.9243859578349 Max fold change at or above threshold -0.867964489347059 0.0565727454167993 1.38402579807631 -0.57263405414605 254.219858169556 176.319974230489 0.693572781843385 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776312_at YFL003C.S1 Protein involved in meiotic recombination, required for normal levels of crossing over, colocalizes with Zip2p to discrete foci on meiotic chromosomes, has homology to bacterial MutS protein 4.92359721644175 57.3123359680176 17.020302772522 MSH4 7131 // meiotic recombination // inferred from mutant phenotype 228 // nuclear chromosome // inferred from direct assay 3677 // DNA binding // inferred from physical interaction 13.0427436828613 64.2172164916992 50.4074554443359 20.9978618621826 0.00585938012227416 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL003C /GEN=MSH4 /DB_XREF=GI:14318519 /SEG=NC_001138:-134516,137152 /DEF=dispensable for DNA repair, required for full levels of reciprocal exchange and spore viability /NOTE=Msh4p; go_component: nuclear chromosome [goid GO:0000228] [evidence IDA] [pmid 11454751]; go_function: DNA binding [goid GO:0003677] [evidence IPI] [pmid 11454751]; go_process: meiotic recombination [goid GO:0007131] [evidence IMP] [pmid 11454751] --- --- --- --- --- --- S0001891 // MSH4 SGDID:S0001891, Chr VI from 137152-134516, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000023239 // cdna:Genscan chromosome:SGD1:VI:134516:136915:-1 // ensembl // 11 // --- /// YFL003C // cdna:known chromosome:SGD1:VI:134516:137152:-1 gene:YFL003C // ensembl // 11 // --- --- No cerevisiae_gene 1.48715033326246 4.92359721644175 2.38297397221531 3.86478923990305 1.60992674338718 Max fold change at or above threshold 4 4.92359721644175 Max fold change at or above threshold -0.998684059741843 1.11987128719848 0.548165483483645 -0.669352710940284 37.1663193702698 24.1553627016379 0.649926145793182 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1776460_at SPAC1F3.05.S1 --- 4.92357393804113 --- --- --- --- 1.58279192447662 1.54704141616821 6.36165904998779 1.19467496871948 0.689208984375 0.805419981479645 0.366210997104645 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F3.05 /DEF=VHS domain --- --- --- --- --- --- SPAC1F3.05 // |||VHS domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.92357393804113 -1.02310895360317 -1.43922286380768 4.01926428332731 -1.32487242632458 Max fold change at or above threshold 1 4.92357393804113 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773256_at YMR144W.S1 Hypothetical protein 4.92289127173898 51.1824245452881 256.982963562012 --- --- 5634 // nucleus // inferred from direct assay --- 251.203811645508 51.3371505737305 51.0276985168457 262.762115478516 0.00122069998178631 0.0239257998764515 0.0239257998764515 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR144W /GEN=RPS16A /DB_XREF=GI:6323793 /SEG=NC_001145:+553361,554389 /DEF=Hypothetical ORF /NOTE=Ymr144wp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004752 // YMR144W SGDID:S0004752, Chr XIII from 553361-554389, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018833 // cdna:Genscan chromosome:SGD1:XIII:553361:554389:1 // ensembl // 11 // --- /// GENEFINDER00000022008 // cdna:GeneFinder chromosome:SGD1:XIII:553361:554389:1 // ensembl // 11 // --- /// YMR144W // cdna:known chromosome:SGD1:XIII:553361:554389:1 gene:YMR144W // ensembl // 11 // --- --- No cerevisiae_gene 1.82749629727898 -4.89321687779941 -1.86680276283615 -4.92289127173898 1.04601165785382 Max fold change at or above threshold 4 4.92289127173898 Max fold change at or above threshold 0.816742862345912 -0.864041635391053 -0.866643981461256 0.913942754506398 154.08269405365 118.912722803477 0.771746129789716 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1769737_at SPAC664.15.S1 --- 4.92120737132263 --- --- --- --- 11.6113338470459 6.05460548400879 6.78447771072388 6.47914171218872 0.0375977009534836 0.422607421875 0.0561522990465164 0.018554700538516 P A M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC664.15 /DEF=WD repeat protein --- --- --- --- --- --- SPAC664.15 // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.92120737132263 -1.91776885838612 -1.45272595980837 -1.71145581754841 -1.79210987547971 Max fold change at or above threshold 4 4.92120737132263 Max fold change at or above threshold PAAAMP No 4 0 PAMP 1 2 1 No No 1 < x = 2
1775559_at SPBC4C3.12.S1 --- 4.91895705425233 --- --- --- --- 4.24264860153198 9.45803165435791 8.95797824859619 6.03050184249878 0.0561522990465164 0.0561522990465164 0.0239257998764515 0.014160200022161 M M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4C3.12 /GEN=sep1 /DEF=fork head domain --- --- --- --- --- --- SPBC4C3.12 // |sep1||fork head transcription factor Sep1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.91895705425233 2.22927528123416 1.05275325741145 2.11141178304551 1.42140026405232 Max fold change at or above threshold 4 4.91895705425233 Max fold change at or above threshold MAMAPP No 4 0 MMPP 0 2 2 No No 1 < x = 2
1773533_at SPBC1778.04.S1 --- 4.91883885448491 --- --- --- --- 1.98978161811829 0.997422754764557 5.74375343322754 1.64702713489532 0.633789002895355 0.696289002895355 0.111571997404099 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1778.04 /GEN=spo6 /DEF=Spo4p regulatory subunit --- --- --- --- --- --- SPBC1778.04 // |spo6||Spo4-Spo6 kinase complex regulatory subunit Spo6|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.8539282647099 -1.99492302397691 -4.91883885448491 2.88662503509272 -1.2081049400833 Max fold change at or above threshold 1 4.91883885448491 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777802_at YHR210C.S1 Hypothetical protein 4.91841598263038 1402.0205078125 315.66276550293 --- --- --- --- 287.830780029297 1388.36950683594 1415.67150878906 343.494750976563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR210C /GEN=BAT1 /DB_XREF=GI:6322004 /SEG=NC_001140:-520710,521735 /DEF=Hypothetical ORF /NOTE=Yhr210cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- ec // 2AMD_PSEPS // (P81593) 2-aminomuconate deaminase (EC 3.5.99.5) (Fragment) // 3.4 --- --- S0001253 // YHR210C SGDID:S0001253, Chr VIII from 521736-520711, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016732 // cdna:Genscan chromosome:SGD1:VIII:520711:521736:-1 // ensembl // 11 // --- /// GENEFINDER00000020124 // cdna:GeneFinder chromosome:SGD1:VIII:520711:521736:-1 // ensembl // 11 // --- /// YHR210C // cdna:known chromosome:SGD1:VIII:520711:521736:-1 gene:YHR210C // ensembl // 11 // --- --- No cerevisiae_gene 3.7000771552007 4.82356163122868 1.22930500202563 4.91841598263038 1.19339130770378 Max fold change at or above threshold 4 4.91841598263038 Max fold change at or above threshold -0.909659349446575 0.843574114762601 0.887068071220649 -0.820982836536675 858.841636657715 627.719439123902 0.730890786299961 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771339_at SPBP16F5.03c.S1 --- 4.91814331273893 --- --- --- --- 1.32603347301483 2.02622127532959 6.52162265777588 0.692720949649811 0.665526986122131 0.633789002895355 0.398925989866257 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP16F5.03c /DEF=phosphatidylinositol kinase (predicted) --- --- --- --- --- --- SPBP16F5.03c // |||phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.20811813857114 1.5280317703616 -1.26352858723383 4.91814331273893 -1.91423902176652 Max fold change at or above threshold 1 4.91814331273893 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772991_at SPAPB1E7.03.S1 --- 4.91774301640075 --- --- --- --- 8.61119747161865 18.6881294250488 10.3840036392212 4.87851858139038 0.274170011281967 0.0805663987994194 0.111571997404099 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1E7.03 /DEF=localization DNA-directed RNA polymerase III complex (subunit) (predicted) --- --- --- --- --- --- SPAPB1E7.03 // |||DNA-directed RNA polymerase III complex subunit Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.42083440531293 2.17021261986412 -4.91774301640075 1.20587219994031 -1.765125483885 Max fold change at or above threshold 4 4.91774301640075 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773709_at SPAC2E12.03c.S1 --- 4.91513333229773 --- --- --- --- 2.81005573272705 0.823595583438873 0.57171505689621 3.08110308647156 0.601073980331421 0.981445014476776 0.953857004642487 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2E12.03c /DEF=G-protein coupled receptor activity --- --- --- --- --- --- SPAC2E12.03c // |||G-protein coupled receptor activity|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.36314756510734 -3.41193637900999 2.68921795845117 -4.91513333229773 1.0964562199204 Max fold change at or above threshold 2 4.91513333229773 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775621_at SPAC2C4.11c.S1 --- 4.91327656771484 --- --- --- --- 1.8940976858139 9.30622577667236 9.0053243637085 7.07700967788696 0.567627012729645 0.466064006090164 0.366210997104645 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2C4.11c /GEN=rbp28 /DEF=RNA-binding protein --- --- --- --- --- --- SPAC2C4.11c // |rbp28||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.68680394365049 4.91327656771484 1.03143350337089 4.75441389911147 3.73634883295152 Max fold change at or above threshold 3 4.91327656771484 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772954_at SPBC56F2.08c.S1 --- 4.91302586373849 --- --- --- --- 2.40952205657959 10.9323759078979 4.42913103103638 2.07766437530518 0.601073980331421 0.334473013877869 0.466064006090164 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC56F2.08c /DEF=RNA-binding protein --- --- --- --- --- --- SPBC56F2.08c // |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.91302586373849 4.53715535744748 2.77344594463555 1.83817824740052 -1.15972631827297 Max fold change at or above threshold 2 4.91302586373849 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771436_at SPAC227.09.S1 --- 4.90933310884626 --- --- --- --- 0.876552939414978 0.446645319461823 4.30329036712646 3.67429494857788 0.850341975688934 0.805419981479645 0.5 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC227.09 /DEF=folylpolyglutamate synthase (predicted) --- --- --- --- --- --- SPAC227.09 // |||folylpolyglutamate synthase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.051417296849 -1.9625257474346 -1.40075169070401 4.90933310884626 4.19175475132186 Max fold change at or above threshold 2 4.90933310884626 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771625_at SPBC8D2.14c.S1 --- 4.90752628551613 --- --- --- --- 6.35171747207642 13.6149940490723 4.61554288864136 1.66647732257843 0.303710997104645 0.129638999700546 0.14453125 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8D2.14c /GEN=sed5 /DEF=SNARE (predicted) --- --- --- --- --- --- SPBC8D2.14c // |sed5||SNARE |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.04978664657379 2.14351379905149 -4.90752628551613 -1.37615826032247 -3.81146349009348 Max fold change at or above threshold 3 4.90752628551613 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770664_at SPCC5E4.05c.S1 --- 4.90507562188319 --- --- --- --- 10.2866563796997 2.09714531898499 11.8563365936279 3.06929707527161 0.334473013877869 0.533936023712158 0.171387001872063 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC5E4.05c /DEF=abhydrolase family --- --- --- --- --- --- SPCC5E4.05c // |||abhydrolase family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.10385695239253 -4.90507562188319 -2.06149407152849 1.15259382213116 -3.35146977546624 Max fold change at or above threshold 3 4.90507562188319 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774882_at SPAC1F8.04c.S1 --- 4.90394001041009 --- --- --- --- 6.13229846954346 3.21126484870911 2.4368200302124 3.37598943710327 0.5 0.633789002895355 0.533936023712158 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F8.04c /DEF=chlorohydrolasedeaminase --- --- --- --- --- --- SPAC1F8.04c // |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.10384294765494 -1.90962089969271 -4.90394001041009 -2.51651676919651 -1.81644480345448 Max fold change at or above threshold 3 4.90394001041009 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1769771_at SPAC22F3.04.S1 --- 4.89731310024044 --- --- --- --- 0.870053231716156 0.435308873653412 0.449053972959518 0.177659302949905 0.888427972793579 0.976073980331421 0.932372987270355 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F3.04 /DEF=AMP binding enzyme (predicted) --- --- --- --- --- --- SPAC22F3.04 // |||AMP binding enzyme |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- SPAC22F3.05c // sanger // 1 // Negative Strand Matching Probes No No -3.34536554420882 -1.99870318381996 -2.34607197987695 -1.93752485025801 -4.89731310024044 Max fold change at or above threshold 0 4.89731310024044 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773119_at SPAC140.03.S1 --- 4.89725931365155 --- --- --- --- 0.774142205715179 0.814224600791931 0.467047274112701 0.514171242713928 0.884033203125 0.725830018520355 0.953857004642487 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC140.03 /DEF=hypothetical protein --- --- --- --- --- --- SPAC140.03 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.8753747550907 1.05177652733676 4.89725931365155 -1.65752429919626 -1.50561163558868 Max fold change at or above threshold 0 4.89725931365155 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772822_at SPAC22A12.02c.S1 --- 4.89630060942867 --- --- --- --- 5.51533889770508 7.03549861907959 1.55199074745178 1.12642979621887 0.24609400331974 0.0676269978284836 0.432372987270355 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22A12.02c /DEF=sequence orphan --- --- --- --- --- --- SPAC22A12.02c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.48899286238873 1.27562399148438 -1.34327151448948 -3.5537189295495 -4.89630060942867 Max fold change at or above threshold 2 4.89630060942867 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780006_at YLR047C.S1 Hypothetical protein 4.89522281625209 46.8430681228638 116.748336791992 --- --- --- 16722 // oxidoreductase activity, oxidizing metal ions // traceable author statement 124.372177124023 25.4068470001221 68.2792892456055 109.124496459961 0.00122069998178631 0.018310546875 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR047C /GEN=STU2 /DB_XREF=GI:6323076 /SEG=NC_001144:-239348,241408 /DEF=Hypothetical ORF /NOTE=Ylr047cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: oxidoreductase activity, oxidizing metal ions [goid GO:0016722] [evidence TAS] [pmid 10341420]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004037 // span:36-58,88-110,154-176,191-210,217-236 // numtm:5 S0004037 // YLR047C SGDID:S0004037, Chr XII from 241408-239348, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017857 // cdna:Genscan chromosome:SGD1:XII:239348:240859:-1 // ensembl // 11 // --- /// GENEFINDER00000024811 // cdna:GeneFinder chromosome:SGD1:XII:239348:241408:-1 // ensembl // 11 // --- /// YLR047C // cdna:known chromosome:SGD1:XII:239348:241408:-1 gene:YLR047C // ensembl // 11 // --- --- No cerevisiae_gene 1.07171149529712 -4.89522281625209 1.90582558516867 -1.82152126213042 -1.13972738623043 Max fold change at or above threshold 4 4.89522281625209 Max fold change at or above threshold 0.958286901539218 -1.26916805584941 -0.304219685591852 0.615100839902042 81.795702457428 44.429778387045 0.543179862171479 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1771380_at SPCC18.17c.S1 --- 4.89450824559209 --- --- --- --- 1.17405128479004 0.807224094867706 5.74640369415283 0.568967819213867 0.850341975688934 0.780517995357513 0.780517995357513 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18.17c /DEF=sequence orphan --- --- --- --- --- --- SPCC18.17c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.69610049449368 -1.4544304267608 -1.99552434998574 4.89450824559209 -2.06347572769969 Max fold change at or above threshold 1 4.89450824559209 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772397_at SPBP8B7.30c.S1 --- 4.8942503680649 --- --- --- --- 1.62656772136688 3.36210298538208 2.24071359634399 2.6063404083252 0.601073980331421 0.780517995357513 0.753906011581421 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.30c /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPBP8B7.30c // |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.8942503680649 2.066992318375 -1.0612723051001 1.37757166019563 1.60235591428985 Max fold change at or above threshold 2 4.8942503680649 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778653_at YLL034C.S1 Putative ATPase of the AAA family, required for export of pre-ribosomal large subunits from the nucleus; distributed between the nucleolus, nucleoplasm, and nuclear periphery depending on growth conditions 4.89413300459339 77.0183639526367 329.535369873047 RIX7 55 // ribosomal large subunit-nucleus export // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay 4386 // helicase activity // inferred from sequence similarity /// 16887 // ATPase activity // inferred from sequence similarity 309.036651611328 90.8924179077148 63.1443099975586 350.034088134766 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL034C /GEN=RIX7 /DB_XREF=GI:6322994 /SEG=NC_001144:-70632,73145 /DEF=Putative ATPase of the AAA family, required for export of pre-ribosomal large subunits from the nucleus; distributed between the nucleolus, nucleoplasm, and nuclear periphery depending on growth conditions /NOTE=Rix7p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11447111]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11447111]; go_function: ATPase activity [goid GO:0016887] [evidence ISS] [pmid 11447111]; go_function: helicase activity [goid GO:0004386] [evidence ISS] [pmid 10077188]; go_process: ribosomal large subunit-nucleus export [goid GO:0000055] [evidence IMP] [pmid 11447111] --- --- --- --- --- --- S0003957 // RIX7 SGDID:S0003957, Chr XII from 73145-70632, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017686 // cdna:Genscan chromosome:SGD1:XII:70632:72518:-1 // ensembl // 11 // --- /// GENEFINDER00000024595 // cdna:GeneFinder chromosome:SGD1:XII:70632:73145:-1 // ensembl // 11 // --- /// YLL034C // cdna:known chromosome:SGD1:XII:70632:73145:-1 gene:YLL034C // ensembl // 11 // --- --- No cerevisiae_gene -1.16947442952322 -3.4000267428808 -1.41984882026089 -4.89413300459339 1.13266205257427 Max fold change at or above threshold 4 4.89413300459339 Max fold change at or above threshold 0.718550355861149 -0.76355947637485 -0.952084943499801 0.997094064013502 203.276866912842 147.184931210198 0.724061391960088 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775921_at SPCC1223.13.S1 --- 4.89362333143941 --- --- --- --- 7.73027181625366 3.19273519515991 2.79472279548645 5.75686407089233 0.0375977009534836 0.219482004642487 0.32666015625 0.0676269978284836 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1223.13 /DEF=sequence orphan --- --- --- --- --- --- SPCC1223.13 // |||DNA binding protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.89362333143941 -2.42120669073104 -1.92724268933581 -2.76602453335918 -1.34279213840382 Max fold change at or above threshold 4 4.89362333143941 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1774745_at SPCC663.02.S1 --- 4.89224922761969 --- --- --- --- 1.56651389598846 0.481741309165955 7.66377639770508 0.978259444236755 0.753906011581421 0.991943001747131 0.0952147990465164 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC663.02 /GEN=wtf14 /DEF=wtf element --- --- --- --- --- --- SPCC663.02 // |wtf14||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.19341602242348 -3.25177406666784 -1.7543770575266 4.89224922761969 -1.60132764903759 Max fold change at or above threshold 1 4.89224922761969 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769770_at YML064C.S1 GTP-binding protein of the ras superfamily involved in termination of M-phase; controls actomyosin and septin dynamics during cytokinesis 4.89071347812242 182.497695922852 849.569854736328 TEM1 87 // M phase of mitotic cell cycle // inferred from mutant phenotype /// 7165 // signal transduction // non-traceable author statement 5816 // spindle pole body // traceable author statement 3924 // GTPase activity // inferred from sequence similarity /// 5515 // protein binding // inferred from physical interaction 820.697631835938 167.807342529297 197.188049316406 878.442077636719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML064C /GEN=TEM1 /DB_XREF=GI:6323576 /SEG=NC_001145:-145139,145876 /DEF=Gtp-binding protein of the ras superfamily involved in termination of M-phase /NOTE=Tem1p; go_component: spindle pole body [goid GO:0005816] [evidence TAS] [pmid 11434459]; go_function: GTPase activity [goid GO:0003924] [evidence ISS] [pmid 7935462]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 10688190]; go_process: M phase of mitotic cell cycle [goid GO:0000087] [evidence IMP] [pmid 7935462]; go_process: signal transduction [goid GO:0007165] [evidence NAS] [pmid 7935462] --- --- --- --- --- --- S0004529 // TEM1 SGDID:S0004529, Chr XIII from 145876-145139, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018663 // cdna:Genscan chromosome:SGD1:XIII:145139:145876:-1 // ensembl // 11 // --- /// YML064C // cdna:known chromosome:SGD1:XIII:145139:145876:-1 gene:YML064C // ensembl // 11 // --- --- No cerevisiae_gene -1.17540027680624 -4.89071347812242 -1.14286095546277 -4.16200492210891 1.0703601954737 Max fold change at or above threshold 4 4.89071347812242 Max fold change at or above threshold 0.789199780183069 -0.902044067095302 -0.825936426353458 0.938780713265691 516.03377532959 386.041486777499 0.748093448981969 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779883_at SPAC23H3.08c.S1 --- 4.88936248427817 --- --- --- --- 1.5844384431839 7.07115983963013 7.74689388275146 2.86912965774536 0.533936023712158 0.366210997104645 0.0561522990465164 0.274170011281967 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H3.08c /GEN=bub3 /DEF=WD repeat protein --- --- --- --- --- --- SPAC23H3.08c // |bub3||mitotic spindle checkpoint protein Bub3|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.77150035666367 4.46288075756403 2.08410340861529 4.88936248427817 1.81081800311529 Max fold change at or above threshold 3 4.88936248427817 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1772503_at SPBC23E6.10c.S1 --- 4.88933864982606 --- --- --- --- 3.09460997581482 15.1305961608887 2.36138677597046 3.64127278327942 0.5 0.219482004642487 0.567627012729645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23E6.10c /DEF=translation initiation factor --- --- --- --- --- --- SPBC23E6.10c // |||methylthioribose-1-phosphate isomerase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.0493090190208 4.88933864982606 -1.79577958278678 -1.31050533834849 1.17664998553514 Max fold change at or above threshold 3 4.88933864982606 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772735_at SPBC3E7.14.S1 --- 4.88709952704092 --- --- --- --- 0.695657730102539 1.34283578395844 3.39974856376648 0.173193290829659 0.919434010982513 0.334473013877869 0.601073980331421 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3E7.14 /GEN=smf1 /DEF=small nuclear ribonucleoprotein (snRNP) (subunit F) --- --- --- --- --- --- SPBC3E7.14 // |smf1|SPBC4F6.01|small nuclear ribonucleoprotein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.25099179610158 1.93031102200288 -2.38813495196905 4.88709952704092 -4.01665518779675 Max fold change at or above threshold 1 4.88709952704092 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772508_at YGR103W.S1 Nucleolar protein involved in rRNA processing and 60S ribosomal subunit biogenesis; constituent of several different pre-ribosomal particles 4.88688551383579 282.478897094727 223.221374511719 NOP7 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype /// 42273 // ribosomal large subunit biogenesis // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 210.714157104492 261.771759033203 303.18603515625 235.728591918945 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR103W /GEN=NOP7 /DB_XREF=GI:6321540 /SEG=NC_001139:+695419,697236 /DEF=Nucleolar protein involved in rRNA processing and 60S ribosomal subunit biogenesis; constituent of several different pre-ribosomal particles /NOTE=Nop7p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 10684247]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10684247]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP] [pmid 12837249]; go_process: ribosomal large subunit biogenesis [goid GO:0042273] [evidence IDA] [pmid 11911362] --- --- --- --- --- --- S0003335 // NOP7 SGDID:S0003335, Chr VII from 695421-697238, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021475 // cdna:GeneFinder chromosome:SGD1:VII:695421:697238:1 // ensembl // 11 // --- /// YGR103W // cdna:known chromosome:SGD1:VII:695421:697238:1 gene:YGR103W // ensembl // 11 // --- --- No cerevisiae_gene 4.88688551383579 1.2423074112832 -1.15788202289727 1.4388498586068 1.11871264445724 Max fold change at or above threshold 4 4.88688551383579 Max fold change at or above threshold -1.06660420510484 0.225836473895524 1.2741719446353 -0.433404213425984 252.850135803223 39.5047933404582 0.156237975569854 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775325_at SPBC365.13c.S1 --- 4.88334493917961 --- --- --- --- 3.03463220596313 6.43292713165283 2.69546413421631 2.11312747001648 0.303710997104645 0.171387001872063 0.171387001872063 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC365.13c /GEN=hba1 /DEF=Ran-GTPase-binding protein --- --- --- --- --- --- SPBC365.13c // |hba1|caf1|Ran-GTPase-binding protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.88334493917961 2.11983749431379 1.20067566665122 -1.12582919113685 -1.43608573028463 Max fold change at or above threshold 3 4.88334493917961 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780023_at SPBC21C3.18.S1 --- 4.8820929155953 --- --- --- --- 3.11650443077087 6.91992807388306 1.9431471824646 0.638354182243347 0.194580003619194 0.129638999700546 0.334473013877869 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21C3.18 /GEN=spo4 /DEF=serinethreonine protein kinase --- --- --- --- --- --- AB036343 // Schizosaccharomyces pombe spo4 mRNA for Cdc7-like protein kinase, complete cds. // gb // 11 // --- /// SPBC21C3.18 // |spo4||serine/threonine protein kinase Spo4|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.41873013388525 2.22041335977546 1.33854999939946 -1.60384373293743 -4.8820929155953 Max fold change at or above threshold 2 4.8820929155953 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773291_at YHL012W.S1 Hypothetical protein 4.88177137165714 99.9387283325195 27.3872594833374 --- --- --- --- 21.7219409942627 106.041549682617 93.8359069824219 33.0525779724121 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL012W /GEN=YLF2 /DB_XREF=GI:6321775 /SEG=NC_001140:+78931,80412 /DEF=Hypothetical ORF /NOTE=Yhl012wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001004 // YHL012W SGDID:S0001004, Chr VIII from 78931-80412, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016544 // cdna:Genscan chromosome:SGD1:VIII:78931:80412:1 // ensembl // 11 // --- /// YHL012W // cdna:known chromosome:SGD1:VIII:78931:80412:1 gene:YHL012W // ensembl // 11 // --- --- No cerevisiae_gene 1.54160708564117 4.88177137165714 1.38617487225989 4.3198675020435 1.52162175475673 Max fold change at or above threshold 4 4.88177137165714 Max fold change at or above threshold -0.988340842291269 0.99865059648505 0.711024646515475 -0.721334400709257 63.6629939079285 42.4358188177612 0.666569638228659 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777811_at SPAC9E9.13.S1 --- 4.88007542369889 --- --- --- --- 0.719203591346741 3.50976777076721 3.10257697105408 1.34455835819244 0.567627012729645 0.303710997104645 0.194580003619194 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9E9.13 /GEN=wos2 /DEF=p23 homolog (PMID 10581266) --- --- --- --- --- --- L41166 // Schizosaccharomyces pombe wos2 mRNA, complete cds. // gb // 10 // --- /// SPAC9E9.13 // |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 3.23843843903574 4.88007542369889 -2.78839494655391 4.31390639366019 1.86951007248823 Max fold change at or above threshold 2 4.88007542369889 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777180_at YPR138C.S1 Ammonium permease of high capacity and low affinity; belongs to a ubiquitous family of cytoplasmic membrane proteins that transport only ammonium (NH4+); expression is under the nitrogen catabolite repression regulation ammonia permease 4.87703893159196 644.919540405273 177.791847229004 MEP3 15696 // ammonium transport // inferred from sequence similarity /// 15696 // ammonium transport // inferred from mutant phenotype 5886 // plasma membrane // traceable author statement /// 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from mutant phenotype 8519 // ammonium transporter activity // inferred from sequence similarity /// 8519 // ammonium transporter activity // inferred from mutant phenotype 168.239593505859 469.328033447266 820.511047363281 187.344100952148 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR138C /GEN=MEP3 /DB_XREF=GI:6325396 /SEG=NC_001148:-810978,812447 /DEF=ammonia permease of high capacity and low affinity; shows sequence similarity to Mep1p and Mep2p /NOTE=Mep3p; go_component: plasma membrane [goid GO:0005886] [evidence TAS] [pmid 11486013]; go_component: plasma membrane [goid GO:0005886] [evidence IMP,ISS] [pmid 9234685]; go_function: ammonium transporter activity [goid GO:0008519] [evidence IMP,ISS] [pmid 9234685]; go_process: ammonium transport [goid GO:0015696] [evidence IMP,ISS] [pmid 9234685] --- --- --- --- --- S0006342 // span:20-42,49-71,109-131,136-158,173-195,202-224,239-261,268-285,290-309,329-351,371-393 // numtm:11 S0006342 // MEP3 SGDID:S0006342, Chr XVI from 812449-810980, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017289 // cdna:Genscan chromosome:SGD1:XVI:810980:811399:-1 // ensembl // 9 // --- /// GENEFINDER00000021048 // cdna:GeneFinder chromosome:SGD1:XVI:810980:811741:-1 // ensembl // 11 // --- /// YPR138C // cdna:known chromosome:SGD1:XVI:810980:812449:-1 gene:YPR138C // ensembl // 11 // --- --- No cerevisiae_gene 1.29539822687799 2.78964079541074 1.156965376505 4.87703893159196 1.11355535904587 Max fold change at or above threshold 4 4.87703893159196 Max fold change at or above threshold -0.795705342186503 0.189740211708234 1.33914249275974 -0.733177362281468 411.355693817139 305.535337544958 0.742752178071901 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769731_at YDR261C.S1 Exo-1,3-beta-glucanase, involved in cell wall beta-glucan assembly; may be anchored to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor 4.87653045424053 47.2331237792969 149.541976928711 EXG2 7047 // cell wall organization and biogenesis // inferred from curator 9277 // cell wall (sensu Fungi) // inferred from direct assay 4338 // glucan 1,3-beta-glucosidase activity // inferred from direct assay 149.690383911133 30.6960830688477 63.7701644897461 149.393569946289 0.000244141003349796 0.00585938012227416 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR261C /GEN=EXG2 /DB_XREF=GI:6320467 /SEG=NC_001136:-977513,979201 /DEF=Exo-1,3-beta-glucanase, involved in cell wall beta-glucan assembly; may be anchored to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor /NOTE=Exg2p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 7875558]; go_function: glucan 1,3-beta-glucosidase activity [goid GO:0004338] [evidence IDA] [pmid 7875558]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IC] [pmid 7875558] --- --- --- --- --- --- S0002669 // EXG2 SGDID:S0002669, Chr IV from 979203-977515, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023838 // cdna:GeneFinder chromosome:SGD1:IV:977515:979203:-1 // ensembl // 10 // --- /// GENSCAN00000025301 // cdna:Genscan chromosome:SGD1:IV:977515:979203:-1 // ensembl // 10 // --- /// YDR261C // cdna:known chromosome:SGD1:IV:977515:979203:-1 gene:YDR261C // ensembl // 10 // --- --- No cerevisiae_gene 1.67197867016564 -4.87653045424053 -2.03086024503785 -2.34734197581068 -1.0019867921019 Max fold change at or above threshold 4 4.87653045424053 Max fold change at or above threshold 0.846696202991551 -1.11717237336308 -0.571321448280659 0.841797618652185 98.3875503540039 60.5917841320954 0.615848081531482 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1772385_at SPAC9G1.03c.S1 --- 4.87652874812482 --- --- --- --- 1.41820561885834 1.08600580692291 0.515865683555603 2.03340339660645 0.567627012729645 0.780517995357513 0.805419981479645 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9G1.03c /GEN=rpl3001 /DEF=60S ribosomal protein L30 --- --- --- --- --- --- SPAC9G1.03c // |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- U97398 // gb // 5 // Cross Hyb Matching Probes No No -3.08309838303965 -1.3058913772079 -4.87652874812482 -2.74917612096885 1.43378602479614 Max fold change at or above threshold 0 4.87652874812482 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769443_at YDR501W.S1 Protein required for partitioning of the 2-micron plasmid 4.87602523137389 33.8856534957886 135.840309143066 PLM2 83 // G1/S-specific transcription in mitotic cell cycle // inferred from physical interaction 5634 // nucleus // inferred from curator 3700 // transcription factor activity // non-traceable author statement /// 3700 // transcription factor activity // inferred from physical interaction 138.845657348633 39.2961349487305 28.4751720428467 132.8349609375 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR501W /GEN=PLM2 /DB_XREF=GI:6320709 /SEG=NC_001136:+1451341,1452906 /DEF=Plasmid Maintenance /NOTE=Plm2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: transcription factor activity [goid GO:0003700] [evidence TAS] [pmid 12464632]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002909 // PLM2 SGDID:S0002909, Chr IV from 1451343-1452908, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023703 // cdna:GeneFinder chromosome:SGD1:IV:1451343:1452908:1 // ensembl // 11 // --- /// GENSCAN00000025492 // cdna:Genscan chromosome:SGD1:IV:1451343:1452908:1 // ensembl // 11 // --- /// YDR501W // cdna:known chromosome:SGD1:IV:1451343:1452908:1 gene:YDR501W // ensembl // 11 // --- --- No cerevisiae_gene 2.18908434401475 -3.53331587266239 -2.02149257484801 -4.87602523137389 -1.04524935580747 Max fold change at or above threshold 4 4.87602523137389 Max fold change at or above threshold 0.913720642354795 -0.771272771164406 -0.954430367351605 0.811982496161216 84.8629813194275 59.0800661896878 0.696181836545527 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777224_at SPCP1E11.09c.S1 --- 4.87545901174275 --- --- --- --- 1.69888234138489 2.98711848258972 1.82083630561829 2.60609602928162 0.725830018520355 0.753906011581421 0.969726979732513 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP1E11.09c /GEN=rpp103 /DEF=60S acidic ribosomal protein --- --- --- --- --- --- AJ002733 // Schizosaccharomyces pombe cDNA for 60S acidic ribosomal protein rpa5. // gb // 9 // --- /// SPCP1E11.09c // |rpp103|rpp1-3|60S acidic ribosomal protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.04223907812209 1.75828449670899 -4.87545901174275 1.07178482068039 1.53400619089206 Max fold change at or above threshold 2 4.87545901174275 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776103_at SPAC1039.10.S1 --- 4.87418731729251 --- --- --- --- 1.24921584129334 6.08891201019287 5.45930337905884 4.53077125549316 0.601073980331421 0.334473013877869 0.129638999700546 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1039.10 /GEN=mmf2 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC1039.10 // |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.31600806246136 4.87418731729251 4.22883732718832 4.37018423766283 3.62689225170438 Max fold change at or above threshold 3 4.87418731729251 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777747_at SPBP8B7.15c.S1 --- 4.87330001009083 --- --- --- --- 9.32804203033447 45.4583473205566 27.6443042755127 12.7106122970581 0.432372987270355 0.0805663987994194 0.129638999700546 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.15c /DEF=zinc finger protein --- --- --- --- --- --- SPBP8B7.15c // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.81241920054276 4.87330001009083 -1.05990344320453 2.96356986660377 1.36262382349089 Max fold change at or above threshold 4 4.87330001009083 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776125_at YHR061C.S1 Protein of unknown function involved in initiation of budding and cellular polarization, interacts with Cdc42p via the Cdc42/Rac-interactive binding (CRIB) domain 4.87136396080922 33.8737115859985 69.1871738433838 GIC1 7096 // regulation of exit from mitosis // inferred from mutant phenotype /// 7096 // regulation of exit from mitosis // inferred from physical interaction /// 7120 // axial bud site selection // inferred from mutant phenotype /// 7266 // Rho protein signal transduction // inferred from physical interaction /// 30468 // establishment of cell polarity (sensu Fungi) // traceable author statement 131 // incipient bud site // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 30478 // actin cap // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay 5083 // small GTPase regulator activity // traceable author statement 63.1329002380371 31.8908824920654 35.8565406799316 75.2414474487305 0.000244141003349796 0.000244141003349796 0.00292969006113708 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR061C /GEN=GIC1 /DB_XREF=GI:6321852 /SEG=NC_001140:-221535,222479 /DEF=Gtpase-interacting component 1 /NOTE=Gic1p; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IDA] [pmid 10652251]; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 9367979]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 9367979]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 9367979]; go_function: small GTPase regulatory/interacting protein activity [goid GO:0005083] [evidence TAS] [pmid 10652251]; go_process: Rho protein signal transduction [goid GO:0007266] [evidence IPI] [pmid 10652251]; go_process: axial budding [goid GO:0007120] [evidence IMP] [pmid 10652251]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence TAS] [pmid 10652251] --- --- --- --- --- --- S0001103 // GIC1 SGDID:S0001103, Chr VIII from 222479-221535, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016606 // cdna:Genscan chromosome:SGD1:VIII:221535:222479:-1 // ensembl // 11 // --- /// GENEFINDER00000020129 // cdna:GeneFinder chromosome:SGD1:VIII:221535:222479:-1 // ensembl // 11 // --- /// YHR061C // cdna:known chromosome:SGD1:VIII:221535:222479:-1 gene:YHR061C // ensembl // 11 // --- --- No cerevisiae_gene 4.87136396080922 -1.97965359703498 -1.35263221601497 -1.76070806165001 1.19179456614601 Max fold change at or above threshold 4 4.87136396080922 Max fold change at or above threshold 0.55141282913354 -0.933380315636229 -0.744910347412008 1.1268778339147 51.5304427146912 21.0413267706836 0.408328080687823 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776300_at SPBC1105.02c.S1 --- 4.87018707175072 --- --- --- --- 2.35840630531311 1.26858508586884 11.4364337921143 6.04800462722778 0.457763671875 0.665526986122131 0.24609400331974 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1105.02c /GEN=lys4 /DEF=homocitrate synthase (predicted) --- --- --- --- --- --- SPBC1105.02c // |lys4||homocitrate synthase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.25213000611714 -1.85908405481361 4.87018707175072 4.84922117378579 2.56444558073077 Max fold change at or above threshold 2 4.87018707175072 Max fold change at or above threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1769607_at YPL269W.S1 Karyogamy protein required for correct positioning of the mitotic spindle and for orienting cytoplasmic microtubules, localizes at the shmoo tip in mating cells and at the tip of the growing bud in small-budded cells through anaphase 4.86946952842663 84.7900810241699 351.560592651367 KAR9 30473 // nuclear migration, microtubule-mediated // inferred from mutant phenotype 5938 // cell cortex // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay --- 360.294677734375 73.9905395507813 95.5896224975586 342.826507568359 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL269W /GEN=KAR9 /DB_XREF=GI:6324986 /SEG=NC_001148:+33013,34947 /DEF=Karyogamy protein required for correct positioning of the mitotic spindle and for orienting cytoplasmic microtubules, localizes at the shmoo tip in mating cells and at the tip of the growing bud in small-budded cells through anaphase /NOTE=Kar9p; go_component: cell cortex [goid GO:0005938] [evidence IDA] [pmid 9442113]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 9442113]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: nuclear migration (sensu Saccharomyces) [goid GO:0000065] [evidence IMP] [pmid 9442113] --- --- --- --- --- --- S0006190 // KAR9 SGDID:S0006190, Chr XVI from 33013-34947, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020783 // cdna:GeneFinder chromosome:SGD1:XVI:33013:34947:1 // ensembl // 11 // --- /// GENSCAN00000016977 // cdna:Genscan chromosome:SGD1:XVI:33871:34947:1 // ensembl // 11 // --- /// YPL269W // cdna:known chromosome:SGD1:XVI:33013:34947:1 gene:YPL269W // ensembl // 11 // --- --- No cerevisiae_gene -3.11722852901896 -4.86946952842663 -1.16105253520267 -3.76918192917413 -1.05095338248467 Max fold change at or above threshold 4 4.86946952842663 Max fold change at or above threshold 0.920241697726239 -0.933615803483219 -0.793758859066818 0.807132964823799 218.175336837769 154.436971556233 0.707857147350571 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774814_at SPAC56F8.08.S1 --- 4.86733248059234 --- --- --- --- 0.27511739730835 1.33908784389496 0.69133073091507 0.866778552532196 0.805419981479645 0.780517995357513 0.5 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC56F8.08 /GEN=mud1 /DEF=UBA domain --- --- --- --- --- --- SPAC56F8.08 // |mud1|ucp1, ddi1|UBA domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.78417788489037 4.86733248059234 1.09594202747837 2.51285719361554 3.15057703006952 Max fold change at or above threshold 0 4.86733248059234 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773098_at SPAC2G11.05c.S1 --- 4.86306638736144 --- --- --- --- 3.23971676826477 2.49324774742126 1.1920884847641 3.46639609336853 0.398925989866257 0.665526986122131 0.725830018520355 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2G11.05c /DEF=BRO1-like domain --- --- --- --- --- --- SPAC2G11.05c // |||BRO1 domain protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.3364646187468 -1.29939624797238 -4.86306638736144 -2.71768145542138 1.06996887114461 Max fold change at or above threshold 2 4.86306638736144 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775554_at SPCC895.04c.S1 --- 4.86178339374969 --- --- --- --- 7.73157978057861 3.50006771087646 7.17205238342285 3.42600655555725 0.24609400331974 0.334473013877869 0.171387001872063 0.00585938012227416 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC895.04c /GEN=ufe1 /DEF=SNARE (predicted) --- --- --- --- --- --- SPCC895.04c // |ufe1||SNARE |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.19316523266836 -2.20898005960077 -4.86178339374969 -1.07801496241843 -2.25673233696456 Max fold change at or above threshold 4 4.86178339374969 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1772840_at SPAC4H3.09.S1 --- 4.85884780315755 --- --- --- --- 3.07326984405518 6.18777227401733 14.9325504302979 6.42094373703003 0.601073980331421 0.533936023712158 0.334473013877869 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4H3.09 /DEF=acyl carrier protein (predicted) --- --- --- --- --- --- SPAC4H3.09 // |||mitochondrial type II fatty acid synthase component|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.8212748447894 2.01341651986295 -1.94541949724096 4.85884780315755 2.08928732680291 Max fold change at or above threshold 4 4.85884780315755 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777258_at YDL070W.S1 Protein involved in transcription initiation at TATA-containing promoters; associates with the basal transcription factor TFIID; contains two bromodomains; corresponds to the C-terminal region of mammalian TAF1; redundant with Bdf1p 4.85853300031203 1009.70050048828 282.120620727539 BDF2 --- 5634 // nucleus // traceable author statement --- 260.937622070313 1267.77404785156 751.626953125 303.303619384766 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL070W /GEN=BDF2 /DB_XREF=GI:6320132 /SEG=NC_001136:+331025,332941 /DEF=bromodomain protein, homolog of BDF1 /NOTE=Bdf2p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 10077188]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002228 // BDF2 SGDID:S0002228, Chr IV from 331025-332941, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023719 // cdna:GeneFinder chromosome:SGD1:IV:331025:332941:1 // ensembl // 11 // --- /// GENSCAN00000025049 // cdna:Genscan chromosome:SGD1:IV:331025:332941:1 // ensembl // 11 // --- /// YDL070W // cdna:known chromosome:SGD1:IV:331025:332941:1 gene:YDL070W // ensembl // 11 // --- --- No cerevisiae_gene 2.30034066226578 4.85853300031203 -1.04199961856085 2.88048517941374 1.16236063231632 Max fold change at or above threshold 4 4.85853300031203 Max fold change at or above threshold -0.818613552237355 1.322341981317 0.224797285588118 -0.728525714667765 645.91056060791 470.274328448909 0.728079640014403 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773259_at SPCC4B3.03c.S1 --- 4.85752341148783 --- --- --- --- 0.712110579013824 0.463344663381577 0.718801081180573 3.45909380912781 0.601073980331421 0.567627012729645 0.828612983226776 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4B3.03c /DEF=involved in mitochondrial genome maintenance (predicted) --- --- --- --- --- --- D89137 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0543. // gb // 10 // --- /// SPCC4B3.03c // |||CBS domain protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.48784634902492 -1.53689172508583 2.83878417705589 1.00939531354247 4.85752341148783 Max fold change at or above threshold 1 4.85752341148783 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770511_at SPCC790.03.S1 --- 4.85496177260475 --- --- --- --- 0.826484143733978 1.70340311527252 4.01254892349243 0.215351954102516 0.753906011581421 0.366210997104645 0.303710997104645 0.49169921875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC790.03 /DEF=rhomboid family protease --- --- --- --- --- --- SPCC790.03 // |||rhomboid family protease|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.7551770280856 2.06102334592495 2.39223507859418 4.85496177260475 -3.83782978509932 Max fold change at or above threshold 1 4.85496177260475 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775840_at SPAC19G12.06c.S1 --- 4.85282018247019 --- --- --- --- 10.2861328125 7.25241565704346 7.11162948608398 2.68274450302124 0.398925989866257 0.398925989866257 0.24609400331974 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19G12.06c /GEN=hta2 /DEF=histone H2A (beta) --- --- --- --- --- --- SPAC19G12.06c // |hta2||histone H2A |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.71460347003265 -1.41830436904292 -4.85282018247019 -1.44638199060115 -3.83418279337299 Max fold change at or above threshold 4 4.85282018247019 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771428_at SPBC17A3.03c.S1 --- 4.8500020346665 --- --- --- --- 1.19878852367401 3.63864660263062 2.59779977798462 0.265971899032593 0.601073980331421 0.533936023712158 0.5 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17A3.03c /DEF=phosphoprotein phosphatase activity (predicted) --- --- --- --- --- --- SPBC17A3.03c // |||phosphoprotein phosphatase activity |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.8500020346665 3.0352698001137 4.83942400717888 2.1670208937461 -4.50719992613622 Max fold change at or above threshold 2 4.8500020346665 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776881_at SPAC1786.02.S1 --- 4.84985924126286 --- --- --- --- 9.15656089782715 1.88800549507141 4.06916475296021 2.3426034450531 0.0561522990465164 0.780517995357513 0.334473013877869 0.366210997104645 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1786.02 /DEF=lysophospholipase (putative) --- --- --- --- --- --- SPAC1786.02 // |||phospholipase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.39827263807031 -4.84985924126286 1.11938935670505 -2.25023105568925 -3.90871144544893 Max fold change at or above threshold 2 4.84985924126286 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1778231_at SPCC576.08c.S1 --- 4.84384711355753 --- --- --- --- 5.23646688461304 25.3646450042725 11.8278980255127 2.4567334651947 0.219482004642487 0.0461426004767418 0.0676269978284836 0.49169921875 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC576.08c /GEN=rps2 /DEF=40S ribosomal protein S2 --- --- --- --- --- --- SPCC576.08c // |rps2||40S ribosomal protein S2|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.83913462318608 4.84384711355753 -4.33972433299957 2.25875543303216 -2.13147537524916 Max fold change at or above threshold 3 4.84384711355753 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1776499_at SPAC3A12.05c.S1 --- 4.84270685148808 --- --- --- --- 4.14292812347412 3.73728084564209 2.77696704864502 2.44418525695801 0.366210997104645 0.466064006090164 0.303710997104645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A12.05c /GEN=taf2 /DEF=transcription initiation factor activity --- --- --- --- --- --- SPAC3A12.05c // |taf2||TATA binding protein-associated factor Taf2|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.84270685148808 -1.10854075318023 -3.80361019775634 -1.49188955104656 -1.69501395676952 Max fold change at or above threshold 3 4.84270685148808 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775249_at SPAC1486.03c.S1 --- 4.84267613874411 --- --- --- --- 3.54466080665588 2.05173230171204 3.74042892456055 4.81502199172974 0.5 0.828612983226776 0.665526986122131 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1486.03c /DEF=G-patch domain --- --- --- --- --- --- SPAC1486.03c // |||G-patch domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.84267613874411 -1.7276429306582 -2.60254145149328 1.0552290130376 1.35838723487688 Max fold change at or above threshold 3 4.84267613874411 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772821_at YBL034C.S1 Component of the mitotic spindle that binds to interpolar microtubules via its association with beta-tubulin (Tub2p); required for interpolar microtubules to provide an outward force on the spindle poles 4.84134487301872 99.744514465332 496.121353149414 STU1 7020 // microtubule nucleation // inferred from physical interaction 5816 // spindle pole body // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from physical interaction 478.322967529297 100.689422607422 98.7996063232422 513.919738769531 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL034C /GEN=STU1 /DB_XREF=GI:6319437 /SEG=NC_001134:-153813,158354 /DEF=Suppressor of cold-sensitive tub2 mutation. Stu1p binds to interpolar microtubules of the mitotic spindle and plays an essential role in their ability to provide an outward force on the spindle poles. /NOTE=Stu1p; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 9585415]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9585415]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752] --- --- --- --- --- --- S0000130 // STU1 SGDID:S0000130, Chr II from 158392-153851, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021111 // cdna:Genscan chromosome:SGD1:II:153851:158392:-1 // ensembl // 11 // --- /// GENEFINDER00000022193 // cdna:GeneFinder chromosome:SGD1:II:153851:158392:-1 // ensembl // 11 // --- /// YBL034C // cdna:known chromosome:SGD1:II:153851:158392:-1 gene:YBL034C // ensembl // 11 // --- --- No cerevisiae_gene -1.75917981569659 -4.75047880048166 -1.40194670009557 -4.84134487301872 1.07441994981781 Max fold change at or above threshold 4 4.84134487301872 Max fold change at or above threshold 0.78666269089489 -0.860159001473993 -0.868400299137374 0.941896609716477 297.932933807373 229.310523824025 0.769671620030715 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773335_at SPBP23A10.07.S1 --- 4.84069604733894 --- --- --- --- 4.47280788421631 1.07661330699921 0.924000978469849 4.30653667449951 0.219482004642487 0.932372987270355 0.753906011581421 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP23A10.07 /GEN=rpa2 /DEF=localization DNA-directed RNA polymerase I complex (subunit) --- --- --- --- --- --- SPBP23A10.07 // |rpa2||DNA-directed RNA polymerase I complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.27603419605214 -4.1545166264786 -1.01510797190471 -4.84069604733894 -1.03860903140599 Max fold change at or above threshold 2 4.84069604733894 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769984_at SPBC18E5.04.S1 --- 4.84045480279029 --- --- --- --- 1.08630764484406 2.05320334434509 4.71740961074829 2.8922905921936 0.87304699420929 0.825684010982513 0.201660007238388 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18E5.04 /GEN=rpl1001 /DEF=60S ribosomal protein L10 --- --- --- --- --- --- U33214 // Schizosaccharomyces pombe QM homolog (SPQM) mRNA, complete cds. // gb // 10 // --- /// SPBC18E5.04 // |rpl1001|rpl10-1|60S ribosomal protein L10|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 4.84045480279029 1.89007538894734 3.56493952500321 4.34260923518171 2.66249676684251 Max fold change at or above threshold 2 4.84045480279029 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775581_at SPCC320.03.S1 --- 4.8404252564691 --- --- --- --- 9.42692375183105 6.46879911422729 1.94754040241241 2.92857313156128 0.0952147990465164 0.24609400331974 0.780517995357513 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC320.03 /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPCC320.03 // |||transcription factor |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.69772428407861 -1.45729115796744 -1.46052430167086 -4.8404252564691 -3.21894770194978 Max fold change at or above threshold 3 4.8404252564691 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1777164_at SPCC4B3.05c.S1 --- 4.8384308164439 --- --- --- --- 0.712026953697205 1.40461301803589 1.79608535766602 3.44509315490723 0.888427972793579 0.780517995357513 0.665526986122131 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4B3.05c /DEF=uroporphyrinogen decarboxylase (predicted) --- --- --- --- --- --- SPCC4B3.05c // |hem12||uroporphyrinogen decarboxylase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 1.08466050496282 1.97269641372764 -2.5823006559712 2.52249630205687 4.8384308164439 Max fold change at or above threshold 1 4.8384308164439 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779598_at SPBP23A10.11c.S1 --- 4.83703917856998 --- --- --- --- 13.2234477996826 10.5622692108154 16.3064308166504 8.9513692855835 0.0375977009534836 0.0375977009534836 0.0375977009534836 0.0805663987994194 P P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP23A10.11c /DEF=predicted N-terminal signal sequence --- --- --- --- --- --- D89208 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1147. // gb // 9 // --- /// SPBP23A10.11c // |||glycoprotein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.83703917856998 -1.25195140700847 -1.87321090855888 1.23314517239912 -1.47725419182286 Max fold change at or above threshold 4 4.83703917856998 Max fold change at or above threshold PAPAPA No 4 0 PPPA 1 3 0 No No 2 < x = 3
1771160_at YML049C.S1 Protein involved in pre-mRNA splicing; component of the pre-spliceosome; associates with U2 snRNA; involved in ER to Golgi transport 4.83567930282135 223.081382751465 967.359191894531 RSE1 245 // spliceosome assembly // inferred from direct assay /// 398 // nuclear mRNA splicing, via spliceosome // inferred from mutant phenotype /// 398 // nuclear mRNA splicing, via spliceosome // inferred from genetic interaction 5686 // snRNP U2 // inferred from physical interaction /// 5686 // snRNP U2 // inferred from direct assay 30620 // U2 snRNA binding // inferred from physical interaction 909.359985351563 188.052169799805 258.110595703125 1025.3583984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML049C /GEN=RSE1 /DB_XREF=GI:6323592 /SEG=NC_001145:-174220,178305 /DEF=RNA splicing and ER to Golgi transport /NOTE=Rse1p; go_component: snRNP U2 [goid GO:0005686] [evidence IPI] [pmid 10369685]; go_component: snRNP U2 [goid GO:0005686] [evidence IDA] [pmid 11804584]; go_function: U2 snRNA binding [goid GO:0030620] [evidence IPI] [pmid 10369685]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IGI,IMP] [pmid 9819400]; go_process: spliceosome assembly [goid GO:0000245] [evidence IDA] [pmid 10369685] --- --- --- --- --- --- S0004513 // RSE1 SGDID:S0004513, Chr XIII from 178305-174220, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018676 // cdna:Genscan chromosome:SGD1:XIII:174220:178218:-1 // ensembl // 11 // --- /// GENEFINDER00000021983 // cdna:GeneFinder chromosome:SGD1:XIII:174220:178287:-1 // ensembl // 11 // --- /// YML049C // cdna:known chromosome:SGD1:XIII:174220:178305:-1 gene:YML049C // ensembl // 11 // --- --- No cerevisiae_gene -2.8595152973217 -4.83567930282135 -1.2594777280808 -3.52314085702043 1.12756049854238 Max fold change at or above threshold 4 4.83567930282135 Max fold change at or above threshold 0.725067753552124 -0.939787216144025 -0.778084935897676 0.992804398489576 595.220287322998 433.25564609595 0.727891261980528 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773223_at SPAC9E9.10c.S1 --- 4.8311322397009 --- --- --- --- 13.7293787002563 5.40505838394165 16.3516521453857 5.79061031341553 0.0107421996071935 0.03564453125 0.0561522990465164 0.274170011281967 P P M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9E9.10c /GEN=cbh1 /DEF=centromere binding protein (k-type repeat) --- --- --- --- --- --- U86754 // Schizosaccharomyces pombe CENP-B homolog (cbh) mRNA, complete cds. // gb // 11 // --- /// SPAC9E9.10c // |cbh1|cbh|centromere binding protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.8311322397009 -2.54009813123317 -1.07127723585814 1.19099724047094 -2.37097265351262 Max fold change at or above threshold 4 4.8311322397009 Max fold change at or above threshold PAPAMA No 4 0 PPMA 1 2 1 No No 1 < x = 2
1772803_at SPBC32F12.02.S1 --- 4.82996614339988 --- --- --- --- 1.32203209400177 1.58499848842621 6.3853702545166 3.84682035446167 0.567627012729645 0.870360970497131 0.432372987270355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32F12.02 /GEN=rec14 /DEF=WD repeat protein --- --- --- --- --- --- SPBC32F12.02 // |rec14||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.5697521976763 1.19891074930597 2.221177638359 4.82996614339988 2.90977834192921 Max fold change at or above threshold 2 4.82996614339988 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778479_at YCL064C.S1 catabolism of hydroxy amino acids; catabolic serine (threonine) dehydratase 4.82881632858038 84.9268684387207 356.502243041992 CHA1 6567 // threonine catabolism // inferred from mutant phenotype /// 9071 // serine family amino acid catabolism // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 42645 // mitochondrial nucleoid // inferred from direct assay 3941 // L-serine ammonia-lyase activity // inferred from mutant phenotype /// 3941 // L-serine ammonia-lyase activity // inferred from sequence similarity /// 4794 // threonine ammonia-lyase activity // inferred from mutant phenotype /// 4794 // threonine ammonia-lyase activity // inferred from sequence similarity 340.390289306641 70.491455078125 99.3622817993164 372.614196777344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL064C /GEN=CHA1 /DB_XREF=GI:10383753 /SEG=NC_001135:-15798,16880 /DEF=catabolism of hydroxy amino acids /NOTE=Cha1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: L-serine ammonia-lyase activity [goid GO:0003941] [evidence IMP,ISS] [pmid 1628804]; go_function: threonine ammonia-lyase activity [goid GO:0004794] [evidence IMP,ISS] [pmid 1628804]; go_process: serine family amino acid catabolism [goid GO:0009071] [evidence IMP] [pmid 1628804]; go_process: threonine catabolism [goid GO:0006567] [evidence IMP] [pmid 1628804] --- --- --- --- --- --- S0000569 // CHA1 SGDID:S0000569, Chr III from 16880-15798, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022418 // cdna:Genscan chromosome:SGD1:III:15798:16880:-1 // ensembl // 11 // --- /// GENEFINDER00000023298 // cdna:GeneFinder chromosome:SGD1:III:15798:16880:-1 // ensembl // 11 // --- /// YCL064C // cdna:known chromosome:SGD1:III:15798:16880:-1 gene:YCL064C // ensembl // 11 // --- --- No cerevisiae_gene -2.04641251547229 -4.82881632858038 -1.00352162128095 -3.4257495212734 1.09466752866641 Max fold change at or above threshold 4 4.82881632858038 Max fold change at or above threshold 0.758469299012378 -0.9520694501667 -0.769094714582551 0.962694865736872 220.714555740356 157.785863873616 0.714886534530291 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778738_at SPBC359.04c.S1 --- 4.82811213285031 --- --- --- --- 0.707368433475494 0.440366357564926 2.81340408325195 0.434500902891159 0.633789002895355 0.995850026607513 0.5 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC359.04c /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPBC359.04c // |||glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.82811213285031 -1.60631806068701 1.20032065258286 3.97728248831932 -1.62800221764485 Max fold change at or above threshold 1 4.82811213285031 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769374_at YFL034C-B.S1 Component of the RAM signaling network, localizes and activates the Ace2p in the daughter cell nucleus to direct daughter cell-specific transcription of several genes involved in cell separation; Mob1p-like protein 4.8279840427638 128.860313415527 587.555541992188 MOB2 903 // cellular morphogenesis during vegetative growth // inferred from genetic interaction /// 6468 // protein amino acid phosphorylation // inferred from direct assay /// 7096 // regulation of exit from mitosis // inferred from mutant phenotype /// 30467 // establishment and/or maintenance of cell polarity (sensu Fungi) // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5933 // bud // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 43332 // mating projection tip // traceable author statement 30295 // protein kinase activator activity // inferred from direct assay 547.019226074219 113.301788330078 144.418838500977 628.091857910156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL034C-B /GEN=MOB2 /DB_XREF=GI:14318483 /SEG=NC_001138:-63015,63992 /DEF=Component of the RAM signalling netwrok, localizes and activates the Ace2p in the daughter cell nucleus to direct daughter cell-specific transcription of several genes involved in cell separation /NOTE=Mob2p; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 12196508]; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 12196508]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12196508]; go_component: shmoo tip [goid GO:0005937] [evidence TAS] [pmid 12972564]; go_function: protein kinase activator activity [goid GO:0030295] [evidence IDA] [pmid 12196508]; go_process: establishment and/or maintenance of cell polarity (sensu Saccharomyces) [goid GO:0030012] [evidence IMP] [pmid 12196508]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 12196508]; go_process: regulation of exit from mitosis [goid GO:0007096] [evidence IMP] [pmid 12196508] --- --- --- --- --- --- S0001859 // MOB2 SGDID:S0001859, Chr VI from 63992-63973,63858-63015, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000023212 // cdna:Genscan chromosome:SGD1:VI:63015:63794:-1 // ensembl // 11 // --- /// YFL034C-B // cdna:known chromosome:SGD1:VI:63015:63992:-1 gene:YFL034C-B // ensembl // 11 // --- --- No cerevisiae_gene 1.0143367323997 -4.8279840427638 -1.09752556094976 -3.78772763825074 1.14820801165943 Max fold change at or above threshold 4 4.8279840427638 Max fold change at or above threshold 0.706654987139519 -0.916598457101305 -0.800138166440077 1.01008163640186 358.207927703857 267.190215602459 0.745908158189493 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772597_at YCR101C.S1 Hypothetical protein 4.82731037992126 48.1323776245117 35.4081325531006 --- --- 5624 // membrane fraction // inferred from direct assay --- 33.8845443725586 39.3325157165527 56.9322395324707 36.9317207336426 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR101C /GEN=GIT1 /DB_XREF=GI:6319944 /SEG=NC_001135:-302478,303026 /DEF=Hypothetical ORF /NOTE=Ycr101cp; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 11935221]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000698 // YCR101C SGDID:S0000698, Chr III from 303026-302478, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YCR101C // cdna:known chromosome:SGD1:III:302478:303026:-1 gene:YCR101C // ensembl // 11 // --- --- No cerevisiae_gene 1.04651696625887 1.16078042201465 4.82731037992126 1.68018312144038 1.0899282081996 Max fold change at or above threshold 4 4.82731037992126 Max fold change at or above threshold -0.76183722061975 -0.235509601452463 1.46479683357417 -0.467450011501953 41.7702550888062 10.3509129021454 0.247805834083098 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775834_at SPAC13G7.11.S1 --- 4.82666303707737 --- --- --- --- 0.364784479141235 1.76069176197052 0.496415793895721 0.294930428266525 0.665526986122131 0.567627012729645 0.888427972793579 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G7.11 /DEF=sequence orphan --- --- --- --- --- --- SPAC13G7.11 // |||mitochondrial inner membrane protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.37662081532427 4.82666303707737 1.04992509887145 1.36084680758449 -1.23684925046657 Max fold change at or above threshold 0 4.82666303707737 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776626_at YGL028C.S1 Cell wall protein with similarity to glucanases; may play a role in conjugation during mating based on its regulation by Ste12p 4.82643386249149 109.767963409424 137.773956298828 SCW11 7109 // cytokinesis, completion of separation // inferred from mutant phenotype 9277 // cell wall (sensu Fungi) // inferred from direct assay 4338 // glucan 1,3-beta-glucosidase activity // inferred from sequence similarity 123.277618408203 52.2132797241211 167.322647094727 152.270294189453 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL028C /GEN=SCW11 /DB_XREF=GI:6321410 /SEG=NC_001139:-441284,442912 /DEF=Soluble Cell Wall protein /NOTE=Scw11p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 9748433]; go_function: glucan 1,3-beta-glucosidase activity [goid GO:0004338] [evidence ISS] [pmid 9748433]; go_process: cytokinesis, completion of separation [goid GO:0007109] [evidence IMP] [pmid 9748433] --- --- --- --- --- --- S0002996 // SCW11 SGDID:S0002996, Chr VII from 442914-441286, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021668 // cdna:GeneFinder chromosome:SGD1:VII:441286:442914:-1 // ensembl // 11 // --- /// YGL028C // cdna:known chromosome:SGD1:VII:441286:442914:-1 gene:YGL028C // ensembl // 11 // --- --- No cerevisiae_gene 4.82643386249149 -2.36103954893399 1.34823288966301 1.35728325429422 1.23518199131044 Max fold change at or above threshold 4 4.82643386249149 Max fold change at or above threshold -0.00965685006880473 -1.40069680745008 0.852497022907182 0.557856634611702 123.770959854126 51.0872015623946 0.412755961677966 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777814_at SPCC1450.09c.S1 --- 4.82459225371845 --- --- --- --- 11.3387851715088 3.03054213523865 7.74887847900391 7.47697114944458 0.303710997104645 0.805419981479645 0.567627012729645 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1450.09c /DEF=lysophospholipase (predicted) --- --- --- --- --- --- SPCC1450.09c // |||phospholipase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.82459225371845 -3.7415038846229 -4.145917412242 -1.46328080924639 -1.51649443937617 Max fold change at or above threshold 4 4.82459225371845 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778340_at SPBC29A3.13.S1 --- 4.8235633430529 --- --- --- --- 0.943619132041931 1.0530606508255 2.27843141555786 2.61054348945618 0.780517995357513 0.753906011581421 0.696289002895355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A3.13 /DEF=PWWP domain protein --- --- --- --- --- --- SPBC29A3.13 // |||PWWP domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.8235633430529 1.11598060601712 2.40121450528832 2.41456678673681 2.76652242500333 Max fold change at or above threshold 1 4.8235633430529 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769747_at SPBC19C2.10.S1 --- 4.82010481788969 --- --- --- --- 1.03778541088104 1.3538476228714 5.00223445892334 1.21044552326202 0.753906011581421 0.919434010982513 0.398925989866257 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C2.10 /DEF=src (SH3) homology domain --- --- --- --- --- --- SPBC19C2.10 // |||src |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.50683625148253 1.30455449525161 3.0821116353601 4.82010481788969 1.16637361690641 Max fold change at or above threshold 1 4.82010481788969 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778811_at YOL124C.S1 Catalytic subunit of an adoMet-dependent tRNA methyltransferase complex (Trm11p-Trm112p), required for the methylation of the guanosine nucleotide at position 10 (m2G10) in tRNAs; contains a THUMP domain and a methyltransferase domain 4.81425367973817 42.8470230102539 192.239479064941 TRM11 30488 // tRNA methylation // inferred from direct assay /// 30488 // tRNA methylation // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 3723 // RNA binding // inferred from sequence similarity /// 4809 // tRNA (guanine-N2-)-methyltransferase activity // inferred from direct assay /// 4809 // tRNA (guanine-N2-)-methyltransferase activity // inferred from mutant phenotype /// 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from sequence similarity 175.015670776367 49.3404006958008 36.353645324707 209.463287353516 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL124C /GEN=MDH2 /DB_XREF=GI:6324448 /SEG=NC_001147:-85455,86756 /DEF=Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family /NOTE=Yol124cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: S-adenosylmethionine-dependent methyltransferase activity [goid GO:0008757] [evidence ISS] [pmid 12872006]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005484 // YOL124C SGDID:S0005484, Chr XV from 86756-85455, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017368 // cdna:Genscan chromosome:SGD1:XV:85455:86756:-1 // ensembl // 11 // --- /// GENEFINDER00000022910 // cdna:GeneFinder chromosome:SGD1:XV:85455:86756:-1 // ensembl // 11 // --- /// YOL124C // cdna:known chromosome:SGD1:XV:85455:86756:-1 gene:YOL124C // ensembl // 11 // --- --- No cerevisiae_gene 2.07567420153765 -3.54710679905894 -1.54518904130553 -4.81425367973817 1.19682589807152 Max fold change at or above threshold 4 4.81425367973817 Max fold change at or above threshold 0.65644189787872 -0.779003367573644 -0.927336261539768 1.04989773123469 117.543251037598 87.5514191347179 0.744844288054561 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776305_at SPBC21.01.S1 --- 4.81279962090957 --- --- --- --- 0.123268850147724 0.228725641965866 0.593268275260925 0.0511428453028202 0.997070014476776 0.997070014476776 0.919434010982513 0.99975597858429 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21.01 /DEF=serine-rich protein --- --- --- --- --- --- SPBC21.01 // |mis17|SPBC776.19|kinetochore protein Mis17p|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 1.32351360981187 1.85550235677354 1.16339770678093 4.81279962090957 -1.23268850147724 Max fold change at or above threshold 0 4.81279962090957 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771616_at SPAC20G8.01.S1 --- 4.81138384220461 --- --- --- --- 5.55886888504028 13.5851736068726 12.6993579864502 5.79046535491943 0.334473013877869 0.24609400331974 0.171387001872063 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20G8.01 /GEN=cdc17 /DEF=DNA ligase --- --- --- --- --- --- SPAC20G8.01 // |cdc17||ATP-dependent DNA ligase Cdc17|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.10259598923325 2.44387372464068 -4.81138384220461 2.2845219502525 1.04166251708192 Max fold change at or above threshold 4 4.81138384220461 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772965_at YKR077W.S1 Hypothetical protein 4.80468284128992 118.854393005371 594.014495849609 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 555.217407226563 115.557556152344 122.151229858398 632.811584472656 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR077W /GEN=ECM4 /DB_XREF=GI:6322930 /SEG=NC_001143:+583295,584386 /DEF=Hypothetical ORF /NOTE=Ykr077wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001785 // YKR077W SGDID:S0001785, Chr XI from 583295-584386, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018479 // cdna:Genscan chromosome:SGD1:XI:583295:584386:1 // ensembl // 11 // --- /// GENEFINDER00000023143 // cdna:GeneFinder chromosome:SGD1:XI:583562:584386:1 // ensembl // 11 // --- /// YKR077W // cdna:known chromosome:SGD1:XI:583295:584386:1 gene:YKR077W // ensembl // 11 // --- --- No cerevisiae_gene 1.87835146925 -4.80468284128992 -1.5496266677978 -4.5453280156916 1.13975458304467 Max fold change at or above threshold 4 4.80468284128992 Max fold change at or above threshold 0.719785278877948 -0.872205725083336 -0.848330292297178 1.00075073850257 356.43444442749 276.169808736501 0.774812347836049 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773811_at SPBC2G5.05.S1 --- 4.80303246583006 --- --- --- --- 5.25456380844116 9.5145206451416 4.93270540237427 1.09400963783264 0.466064006090164 0.533936023712158 0.219482004642487 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G5.05 /DEF=transketolase (predicted) --- --- --- --- --- --- D89172 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0725. // gb // 11 // --- /// SPBC2G5.05 // |||transketolase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.32661746290865 1.81071559733599 -2.01463954987521 -1.0652498740168 -4.80303246583006 Max fold change at or above threshold 3 4.80303246583006 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773906_at YIL134C-A.S1 Identified by fungal homology and RT-PCR 4.80133416845982 14.2637934684753 12.3921747207642 --- --- --- --- 9.37770938873291 16.1341285705566 12.393458366394 15.4066400527954 0.000244141003349796 0.000244141003349796 0.00805663969367743 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL134C-A /GEN=VHS2 /DB_XREF=GI:33438814 /SEG=NC_001141:-96522,96725 /DEF=Identified by fungal homology and RT-PCR /NOTE=Yil134c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028556 // span:13-30,45-64 // numtm:2 S0028556 // YIL134C-A SGDID:S0028556, Chr IX from 96725-96522, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YIL134C-A // cdna:known chromosome:SGD1:IX:96522:96725:-1 gene:YIL134C-A // ensembl // 11 // --- --- No cerevisiae_gene 4.80133416845982 1.72047649396572 1.78494008231874 1.32158695185036 1.64290013841825 Max fold change at or above threshold 4 4.80133416845982 Max fold change at or above threshold -1.27776016165771 0.907678550523247 -0.302282710564782 0.672364321699246 13.3279840946198 3.09156195694967 0.231960207560397 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1774773_at SPAC2C4.13.S1 --- 4.80091609484838 --- --- --- --- 2.05961656570435 4.34591579437256 6.28634691238403 0.429004907608032 0.5 0.274170011281967 0.194580003619194 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2C4.13 /GEN=vma16 /DEF=ATP synthase (subunit) --- --- --- --- --- --- SPAC2C4.13 // |vma16||ATP synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.23605079005165 2.11006061358142 1.45295438249784 3.05219282902506 -4.80091609484838 Max fold change at or above threshold 2 4.80091609484838 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771063_at SPCC74.01.S1 --- 4.79831554439476 --- --- --- --- 0.66274893283844 0.760625779628754 1.02427577972412 0.527462720870972 0.62548828125 0.919434010982513 0.725830018520355 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC74.01 /GEN=sly1 /DEF=sec1 family --- --- --- --- --- --- SPCC74.01 // |sly1||sec1 family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.73766318693751 1.14768314506539 4.79831554439476 1.54549593212821 -1.25648487867366 Max fold change at or above threshold 0 4.79831554439476 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778265_at YNR060W.S1 Ferric reductase, reduces a specific subset of siderophore-bound iron prior to uptake by transporters; expression induced by low iron levels 4.79759615550791 537.65217590332 123.678665161133 FRE4 15892 // iron-siderophore transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from mutant phenotype 293 // ferric-chelate reductase activity // inferred from sequence similarity /// 293 // ferric-chelate reductase activity // inferred from mutant phenotype 119.193832397461 571.843872070313 503.460479736328 128.163497924805 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR060W /GEN=FRE4 /DB_XREF=GI:6324388 /SEG=NC_001146:+739948,742107 /DEF=Ferric reductase, reduces a specific subset of siderophore-bound iron prior to uptake by transporters; expression induced by low iron levels /NOTE=Fre4p; go_component: plasma membrane [goid GO:0005886] [evidence IMP,ISS] [pmid 11120744]; go_function: ferric-chelate reductase activity [goid GO:0000293] [evidence IMP,ISS] [pmid 11120744]; go_process: iron-siderochrome transport [goid GO:0015892] [evidence IMP] [pmid 11120744] --- --- --- --- --- S0005343 // span:155-177,225-247,268-287,311-333,345-367 // numtm:5 S0005343 // FRE4 SGDID:S0005343, Chr XIV from 739949-742108, Verified ORF // sgd // 10 // --- /// GENSCAN00000020087 // cdna:Genscan chromosome:SGD1:XIV:739949:742108:1 // ensembl // 10 // --- /// GENEFINDER00000020611 // cdna:GeneFinder chromosome:SGD1:XIV:740252:742108:1 // ensembl // 10 // --- /// YNR060W // cdna:known chromosome:SGD1:XIV:739949:742108:1 gene:YNR060W // ensembl // 10 // --- --- No cerevisiae_gene 2.71781544282158 4.79759615550791 1.18460083208229 4.22388029321434 1.0752527655746 Max fold change at or above threshold 4 4.79759615550791 Max fold change at or above threshold -0.878713298535815 1.00215217824787 0.718003386569194 -0.841442266281249 330.665420532227 240.660507229306 0.727806696091619 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-LysX-M_at AFFX-LysX-M --- 4.79616552136719 --- --- --- --- 6.2274227142334 1.29841697216034 2.67616581916809 3.96646046638489 0.425962299108505 0.84328955411911 0.672920525074005 0.440641224384308 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 720-990 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). --- --- --- --- --- --- AFFX-LysX-M // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 720-990 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // --- // --- /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X17013 // Bacillus subtilis /REF=X17013 /DEF=B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 1008-1263 of X17013 /LEN=1108 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X17013 // Bacillus subtilis /REF=X17013 /DEF=B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 /LEN=1108 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-LysX-M // --- // unknown // --- // --- /// AFFX-LysX-M // --- // unknown // --- // --- /// AFFX-LysX-M // --- // unknown // --- // --- /// AFFX-LysX-M // --- // unknown // --- // --- /// AFFX-LysX-M // --- // gb // --- // --- /// AFFX-LysX-M // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 720-990 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // --- // --- /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-LysX-M // --- // unknown // --- // --- /// AFFX-LysX-M // --- // affx // --- // --- /// AFFX-LysX-M // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-LysX-M // --- // affx // --- // --- /// AFFX-LysX-M // --- // affx // --- // --- /// AFFX-LysX-M // --- // affx // --- // --- /// AFFX-LysX-M // --- // affx // --- // --- /// AFFX-LysX-M // --- // affx // --- // --- /// AFFX-LysX-M // --- // affx // --- // --- /// AFFX-LysX-M // --- // affx // --- // --- /// AFFX-LysX-M // --- // affx // --- // --- /// AFFX-LysX-M // --- // affx // --- // --- /// AFFX-LysX-M // --- // affx // --- // --- /// AFFX-LysX-M // --- // affx // --- // --- 50812173 // gb // 20 // Negative Strand Matching Probes AFFX_control No -1.8587032238548 -4.79616552136719 -2.00843027400005 -2.32699434004775 -1.57002011415714 Max fold change at or above threshold 3 4.79616552136719 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770689_at SPAC222.14c.S1 --- 4.79497031192462 --- --- --- --- 9.02478218078613 2.16690945625305 8.4901704788208 5.91104459762573 0.0375977009534836 0.398925989866257 0.0461426004767418 0.0461426004767418 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC222.14c /DEF=GTP binding --- --- --- --- --- --- SPAC222.14c // |||GTP binding|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.79497031192462 -4.16481738761318 1.13107425947119 -1.06296831180233 -1.52676604477169 Max fold change at or above threshold 3 4.79497031192462 Max fold change at or above threshold PAAPPP No 4 0 PAPP 1 3 0 No No 2 < x = 3
1775335_at SPAC1142.06.S1 --- 4.79494391249728 --- --- --- --- 2.57532930374146 0.537092685699463 1.26542031764984 2.07682681083679 0.567627012729645 0.633789002895355 0.665526986122131 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1142.06 /DEF=ATPase --- --- --- --- --- --- SPAC1142.06 // |||ATPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.40146767469831 -4.79494391249728 -1.77992041063498 -2.03515722627593 -1.24003084431668 Max fold change at or above threshold 1 4.79494391249728 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779237_at SPBC1604.17c.S1 --- 4.79326661748062 --- --- --- --- 8.01970863342285 9.29442024230957 10.7070236206055 5.89316368103027 0.171387001872063 0.194580003619194 0.129638999700546 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1604.17c /DEF=sequence orphan --- --- --- --- --- --- SPBC1604.17c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.79326661748062 1.1589473716756 -2.72671668078375 1.33508885547076 -1.36084946346184 Max fold change at or above threshold 4 4.79326661748062 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771634_at YJR046W.S1 DNA replication licensing factor, required for pre-replication complex assembly 4.79191442114718 3194.63781738281 749.458862304688 TAH11 30174 // regulation of DNA replication initiation // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5656 // pre-replicative complex // inferred from mutant phenotype /// 5737 // cytoplasm // inferred from direct assay --- 692.971557617188 3320.66040039063 3068.615234375 805.946166992188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR046W /GEN=TAH11 /DB_XREF=GI:6322506 /SEG=NC_001142:+521962,523776 /DEF=Essential protein. /NOTE=Tah11p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11836525]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11836525]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA replication licensing [goid GO:0030174] [evidence IDA] [pmid 11967159] --- --- --- --- --- --- S0003807 // TAH11 SGDID:S0003807, Chr X from 521962-523776, Verified ORF // sgd // 11 // --- /// GENSCAN00000024169 // cdna:Genscan chromosome:SGD1:X:521962:523776:1 // ensembl // 11 // --- /// GENEFINDER00000024449 // cdna:GeneFinder chromosome:SGD1:X:521962:523776:1 // ensembl // 11 // --- /// YJR046W // cdna:known chromosome:SGD1:X:521962:523776:1 gene:YJR046W // ensembl // 11 // --- --- No cerevisiae_gene 1.74905981743662 4.79191442114718 1.3210521976817 4.42819795508861 1.16302921546083 Max fold change at or above threshold 4 4.79191442114718 Max fold change at or above threshold -0.90316189971506 0.952261074164671 0.774290842732272 -0.823390017181882 1972.04833984375 1416.22092631465 0.718147165919301 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772547_at YDR412W.S1 Protein required for cell viability 4.78790970952769 106.832344055176 400.545791625977 --- 6364 // rRNA processing // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 369.722320556641 77.2199859619141 136.444702148438 431.369262695313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR412W /GEN=DFM1 /DB_XREF=GI:6320620 /SEG=NC_001136:+1294681,1295388 /DEF=Protein required for cell viability /NOTE=Ydr412wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10684247]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 12837249] --- --- --- --- --- --- S0002820 // YDR412W SGDID:S0002820, Chr IV from 1294683-1295390, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023541 // cdna:GeneFinder chromosome:SGD1:IV:1294683:1295390:1 // ensembl // 11 // --- /// GENSCAN00000025427 // cdna:Genscan chromosome:SGD1:IV:1294683:1295390:1 // ensembl // 11 // --- /// YDR412W // cdna:known chromosome:SGD1:IV:1294683:1295390:1 gene:YDR412W // ensembl // 11 // --- YDR413C // ensembl // 10 // Negative Strand Matching Probes No cerevisiae_gene 1.10946886689221 -4.78790970952769 -1.54754882083186 -2.70968615662645 1.16673849186562 Max fold change at or above threshold 4 4.78790970952769 Max fold change at or above threshold 0.670210477322207 -1.01928908162147 -0.677205891022899 1.02628449532217 253.689067840576 173.129571443988 0.682447899382037 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773832_at YKR060W.S1 Possible U3 snoRNP protein involved in maturation of pre-18S rRNA, based on computational analysis of large-scale protein-protein interaction data 4.78288782811632 165.032775878906 245.048637390137 UTP30 6365 // 35S primary transcript processing // RCA 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay 30515 // snoRNA binding // RCA 213.873428344727 161.291793823242 168.77375793457 276.223846435547 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR060W /GEN=UTP30 /DB_XREF=GI:6322913 /SEG=NC_001143:+556160,556984 /DEF=Possible U3 snoRNP protein involved in maturation of pre-18S rRNA, based on computational analysis of large-scale protein-protein interaction data /NOTE=Utp30p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: snoRNA binding [goid GO:0030515] [evidence TAS] [pmid 14566057]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0001768 // UTP30 SGDID:S0001768, Chr XI from 556160-556984, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018468 // cdna:Genscan chromosome:SGD1:XI:556160:556984:1 // ensembl // 11 // --- /// YKR060W // cdna:known chromosome:SGD1:XI:556160:556984:1 gene:YKR060W // ensembl // 11 // --- --- No cerevisiae_gene 4.78288782811632 -1.32600316032884 1.15038937576665 -1.26721968487329 1.29152952086372 Max fold change at or above threshold 4 4.78288782811632 Max fold change at or above threshold 0.167178537057811 -0.828043663280953 -0.686431162005642 1.34729628822878 205.040706634521 52.83406509982 0.257675980379813 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772770_at SPAC20G4.04c.S1 --- 4.78181234107918 --- --- --- --- 0.317838847637177 1.21138381958008 1.16576266288757 0.196100667119026 0.969726979732513 0.398925989866257 0.753906011581421 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20G4.04c /GEN=hus1 /DEF=PCNA related protein --- --- --- --- --- --- SPAC20G4.04c // |hus1||checkpoint clamp complex protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.78181234107918 3.81131453434828 2.07359223741578 3.66777903819463 -1.62079432113436 Max fold change at or above threshold 0 4.78181234107918 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772971_at SPBC409.08.S1 --- 4.77784877769378 --- --- --- --- 2.03047800064087 4.84544849395752 7.47029876708984 1.06932687759399 0.633789002895355 0.466064006090164 0.171387001872063 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC409.08 /DEF=membrane transporter --- --- --- --- --- --- SPBC409.08 // |||membrane transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.41891296858477 2.3863585285968 4.77784877769378 3.6790838239725 -1.89883752404081 Max fold change at or above threshold 2 4.77784877769378 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773320_at SPAC1B1.02c.S1 --- 4.77610386201371 --- --- --- --- 0.928262650966644 0.465088993310928 4.43347883224487 3.35509634017944 0.888427972793579 0.943848013877869 0.466064006090164 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B1.02c /DEF=NAD kinase (predicted) --- --- --- --- --- --- SPAC1B1.02c // |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.73236052521894 -1.99588178674886 -1.13445209017887 4.77610386201371 3.61438256369102 Max fold change at or above threshold 2 4.77610386201371 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777323_at SPBC16E9.15.S1 --- 4.77459379612384 --- --- --- --- 0.588881552219391 1.63313019275665 0.676929473876953 0.123336471617222 0.753906011581421 0.567627012729645 0.805419981479645 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16E9.15 /DEF=small protein conserved in human and D. melanogaster --- --- --- --- --- --- SPBC16E9.15 // |||small protein conserved in human and D. melanogaster|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.74368448250667 2.77327450079167 3.42058786049465 1.14951720142315 -4.77459379612384 Max fold change at or above threshold 0 4.77459379612384 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772455_at SPAC1486.09.S1 --- 4.77328994408172 --- --- --- --- 1.33950436115265 1.29333889484406 2.51758122444153 6.39384269714355 0.805419981479645 0.725830018520355 0.850341975688934 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1486.09 /DEF=26S proteasome binding (predicted) --- --- --- --- --- --- SPAC1486.09 // |||26S proteasome binding |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.15468607566165 -1.03569479468423 1.04045315579647 1.87948714274819 4.77328994408172 Max fold change at or above threshold 2 4.77328994408172 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780236_at SPBC902.02c.S1 --- 4.77224674311078 --- --- --- --- 1.49929904937744 7.15502500534058 1.51634037494659 0.557579398155212 0.828612983226776 0.601073980331421 0.725830018520355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC902.02c /GEN=ctf18 /DEF=AAA family ATPase (predicted) --- --- --- --- --- --- SPBC902.02c // |ctf18|chl12|DNA replication factor C complex subunit Ctf18|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.53465414359998 4.77224674311078 -2.32040790515963 1.01136619514048 -2.68894269468702 Max fold change at or above threshold 1 4.77224674311078 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778024_at YGR225W.S1 Activator of meiotic anaphase promoting complex (APC/C); Cdc20p family member; required for initiation of spore wall assembly; required for Clb1p degradation during meiosis 4.76854671813221 20.1629648208618 25.3105144500732 AMA1 7127 // meiosis I // inferred from mutant phenotype /// 7127 // meiosis I // inferred from expression pattern /// 30163 // protein catabolism // inferred from mutant phenotype /// 30163 // protein catabolism // inferred from physical interaction /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 5680 // anaphase-promoting complex // inferred from physical interaction 8047 // enzyme activator activity // inferred from mutant phenotype /// 8047 // enzyme activator activity // inferred from physical interaction 27.5921745300293 21.734748840332 18.5911808013916 23.0288543701172 0.0107421996071935 0.0239257998764515 0.018554700538516 0.00585938012227416 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR225W /GEN=AMA1 /DB_XREF=GI:6681847 /SEG=NC_001139:+945146,946927 /DEF=Required for sporulation, highly induced during sporulation; activator of meiotic anaphase promoting complex /NOTE=Ama1p; go_component: anaphase-promoting complex [goid GO:0005680] [evidence IPI] [pmid 11114178]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiosis I [goid GO:0007127] [evidence IEP,IMP] [pmid 11114178]; go_process: protein catabolism [goid GO:0030163] [evidence IMP,IPI] [pmid 11114178]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 11114178] --- --- --- --- --- --- S0003457 // AMA1 SGDID:S0003457, Chr VII from 945148-946330,946424-946929, intron sequence removed, Verified ORF // sgd // 11 // --- /// YGR225W // cdna:known chromosome:SGD1:VII:945148:946929:1 gene:YGR225W // ensembl // 11 // --- GENSCAN00000019516 // ensembl // 1 // Cross Hyb Matching Probes /// S0003458 // sgd // 9 // Negative Strand Matching Probes /// YGR226C // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene -4.76854671813221 -1.26949589952601 1.19098223547422 -1.48415395583501 -1.19815662935598 Max fold change at or above threshold 4 4.76854671813221 Max fold change at or above threshold 1.29998959467211 -0.26827207776842 -1.10992804258086 0.0782105256771717 22.7367396354675 3.73497981403955 0.164270685855648 PMPPPP Called_P_>2EXP 4 0 PPPP 0 4 0 Yes Yes 3 < x
1780142_at SPBC16A3.02c.S1 --- 4.76625862452704 --- --- --- --- 1.05514645576477 0.555642068386078 1.78445637226105 3.40652894973755 0.805419981479645 0.753906011581421 0.5 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16A3.02c /DEF=quinone oxidoreductase (predicted) --- --- --- --- --- --- SPBC16A3.02c // |||mitochondrial peptidase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.47255903676194 -1.89896790721688 4.76625862452704 1.69119306851832 3.2284892122094 Max fold change at or above threshold 1 4.76625862452704 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771066_at SPCC16A11.04.S1 --- 4.76600648474761 --- --- --- --- 3.34859275817871 3.42234253883362 0.897054135799408 1.20444858074188 0.398925989866257 0.466064006090164 0.753906011581421 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16A11.04 /DEF=PX domain --- --- --- --- --- --- SPCC16A11.04 // |||PX domain protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.12746777288161 1.02202411161369 -4.76600648474761 -3.73287700768986 -2.78018739174082 Max fold change at or above threshold 2 4.76600648474761 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776456_at SPAC6B12.06c.S1 --- 4.76408924378314 --- --- --- --- 0.654898226261139 0.88877409696579 0.172167733311653 0.213674411177635 0.5927734375 0.828612983226776 0.962401986122131 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6B12.06c /DEF=conserved fungal protein --- --- --- --- --- --- SPAC6B12.06c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.76408924378314 1.35711788691178 -2.47524840357247 -3.80383834801182 -3.06493520984456 Max fold change at or above threshold 0 4.76408924378314 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774437_at SPAC821.07c.S1 --- 4.76281559748681 --- --- --- --- 3.60784697532654 8.55087661743164 1.69574868679047 1.21921265125275 0.398925989866257 0.00415039015933871 0.466064006090164 0.466064006090164 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC821.07c /DEF=zinc finger protein --- --- --- --- --- --- SPAC821.07c // |||transcription factor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.23326817736266 2.37007741068556 -4.76281559748681 -2.12758352899278 -2.95916136665696 Max fold change at or above threshold 2 4.76281559748681 Max fold change at or above threshold AMPAAA No 3 0 APAA 3 1 0 No No x = 1
1779620_at YEL073C.S1 Hypothetical protein 4.76200451671108 1869.48828125 428.59049987793 --- --- --- --- 404.463165283203 1926.05541992188 1812.92114257813 452.717834472656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL073C /DB_XREF=GI:6320762 /SEG=NC_001137:-7230,7553 /DEF=Hypothetical ORF /NOTE=Yel073cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000799 // YEL073C SGDID:S0000799, Chr V from 7553-7230, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YEL073C // cdna:known chromosome:SGD1:V:7230:7553:-1 gene:YEL073C // ensembl // 11 // --- --- No cerevisiae_gene -1.80275142535025 4.76200451671108 1.30971734225559 4.48228985526711 1.1193054728622 Max fold change at or above threshold 4 4.76200451671108 Max fold change at or above threshold -0.893402058430087 0.932325927811848 0.796578380648636 -0.835502250030397 1149.03939056396 833.416733546768 0.725316068701278 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772582_at SPBC428.04.S1 --- 4.76011210928281 --- --- --- --- 1.70728445053101 2.43297576904297 8.12686538696289 3.2035071849823 0.567627012729645 0.601073980331421 0.274170011281967 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC428.04 /DEF=sequence orphan --- --- --- --- --- --- SPBC428.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.6370804106205 1.42505589404639 2.42894480698574 4.76011210928281 1.87637577556917 Max fold change at or above threshold 2 4.76011210928281 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777792_at SPBC16G5.02c.S1 --- 4.75930221789665 --- --- --- --- 0.432832390069962 0.584957599639893 2.05998015403748 0.706712424755096 0.976073980331421 0.953857004642487 0.725830018520355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16G5.02c /DEF=ribokinase (predicted) --- --- --- --- --- --- SPBC16G5.02c // |||ribokinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.51829032299155 1.3514644769199 1.23651365085901 4.75930221789665 1.63276233703505 Max fold change at or above threshold 0 4.75930221789665 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771375_at YBL049W.S1 Protein of unknown function, has homology to kinase Snf7p; not required for growth on nonfermentable carbon sources; essential for viability in stationary phase 4.75925399762331 917.328887939453 208.326797485352 MOH1 --- --- --- 195.482055664063 930.348754882813 904.309020996094 221.171539306641 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL049W /GEN=MOH1 /DB_XREF=GI:6319422 /SEG=NC_001134:+126793,127209 /DEF=Hypothetical ORF /NOTE=Moh1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000145 // MOH1 SGDID:S0000145, Chr II from 126831-127247, Uncharacterized ORF // sgd // 11 // --- /// YBL049W // cdna:known chromosome:SGD1:II:126831:127247:1 gene:YBL049W // ensembl // 11 // --- --- No cerevisiae_gene -1.61229029932258 4.75925399762331 1.34446252596964 4.62604620114163 1.13141607067365 Max fold change at or above threshold 4 4.75925399762331 Max fold change at or above threshold -0.896807789509508 0.897235325578108 0.833664061091847 -0.834091597160447 562.827842712402 409.614848739497 0.727780002434607 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771547_at SPBC21C3.09c.S1 --- 4.75852995594238 --- --- --- --- 8.76520824432373 11.8770971298218 1.84199917316437 7.92879724502563 0.0952147990465164 0.149657994508743 0.366210997104645 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21C3.09c /DEF=fumarylacetoacetate (FAA) hydrolase (predicted) --- --- --- --- --- --- SPBC21C3.09c // |||fumarylacetoacetate |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.84431661148036 1.35502737627635 -1.75065285291486 -4.75852995594238 -1.10549027468483 Max fold change at or above threshold 3 4.75852995594238 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778908_at SPAC1B2.05.S1 --- 4.75170296463396 --- --- --- --- 1.1185941696167 0.249577060341835 4.12990045547485 0.422674983739853 0.5 0.932372987270355 0.274170011281967 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B2.05 /GEN=mcm5 /DEF=MCM complex subunit --- --- --- --- --- --- SPAC1B2.05 // |mcm5|nda4, SPAC3F10.01|MCM complex subunit|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.68175653096787 -4.4819590714171 -4.75170296463396 3.69204539738484 -2.64646409806257 Max fold change at or above threshold 1 4.75170296463396 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779215_at SPCC663.11.S1 --- 4.74841598012068 --- --- --- --- 0.368817925453186 1.75130093097687 0.323053359985352 0.114060506224632 0.86572265625 0.870360970497131 0.665771484375 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC663.11 /DEF=sequence orphan --- --- --- --- --- --- SPCC663.11 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.65831875880976 4.74841598012068 1.61212885872026 -1.14166255837707 -3.23352874418102 Max fold change at or above threshold 0 4.74841598012068 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778776_at SPAC17C9.09c.S1 --- 4.74832538954227 --- --- --- --- 1.87083196640015 0.848138689994812 3.29032444953918 3.97305750846863 0.601073980331421 0.665526986122131 0.725830018520355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17C9.09c /GEN=tim13 /DEF=TIM22 inner membrane protein import complex --- --- --- --- --- --- AF143538 // Schizosaccharomyces pombe small zinc finger protein Tim13 mRNA, complete cds. // gb // 11 // --- /// SPAC17C9.09c // |tim13||TIM22 inner membrane protein import complex|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.74832538954227 -2.20580901268823 2.15598894739512 1.7587493204269 2.12368485242081 Max fold change at or above threshold 2 4.74832538954227 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779508_at YNL123W.S1 shows protein sequence similarity to the mammalian Omi/HtrA2 family of serine proteases 4.74719656125405 271.208053588867 1272.23327636719 --- --- 5634 // nucleus // inferred from direct assay 8236 // serine-type peptidase activity // inferred from sequence similarity 1251.48461914063 263.626037597656 278.790069580078 1292.98193359375 0.000244141003349796 0.000732421991415322 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL123W /GEN=NAF1 /DB_XREF=GI:6324206 /SEG=NC_001146:+394685,397678 /DEF=shows protein sequence similarity to the mammalian Omi/HtrA2 family of serine proteases /NOTE=Ynl123wp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: serine-type peptidase activity [goid GO:0008236] [evidence ISS] [pmid 14534547]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005067 // YNL123W SGDID:S0005067, Chr XIV from 394685-397678, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000019935 // cdna:Genscan chromosome:SGD1:XIV:394685:397678:1 // ensembl // 10 // --- /// GENEFINDER00000020665 // cdna:GeneFinder chromosome:SGD1:XIV:394685:397678:1 // ensembl // 10 // --- /// YNL123W // cdna:known chromosome:SGD1:XIV:394685:397678:1 gene:YNL123W // ensembl // 10 // --- --- No cerevisiae_gene -1.74631199196764 -4.74719656125405 -1.13397343787728 -4.4889856407929 1.03315846940382 Max fold change at or above threshold 4 4.74719656125405 Max fold change at or above threshold 0.829720510593606 -0.878716564681789 -0.852491359036497 0.901487413124681 771.720664978027 578.223568101698 0.749265368082584 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769714_at SPAC1687.14c.S1 --- 4.74693596806162 --- --- --- --- 0.360101968050003 0.330843389034271 1.70938098430634 1.3319194316864 0.665526986122131 0.828612983226776 0.601073980331421 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.14c /DEF=EF hand --- --- --- --- --- --- SPAC1687.14c // |||EF hand|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.0813735509931 -1.08843634174205 -1.85554132765999 4.74693596806162 3.69872855430064 Max fold change at or above threshold 0 4.74693596806162 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769754_at SPAC32A11.02c.S1 --- 4.74693595949694 --- --- --- --- 0.865141034126282 0.583307325839996 2.15416121482849 0.972976386547089 0.805419981479645 0.95166015625 0.601073980331421 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC32A11.02c /DEF=hypothetical protein --- --- --- --- --- --- SPAC32A11.02c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.39785824829808 -1.48316504148208 4.74693595949694 2.4899538108304 1.12464482456287 Max fold change at or above threshold 0 4.74693595949694 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777401_at SPBC17D11.05.S1 --- 4.74655004947128 --- --- --- --- 2.18601179122925 0.460547506809235 4.3556432723999 4.98827981948853 0.466064006090164 0.828612983226776 0.567627012729645 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17D11.05 /GEN=tif32 /DEF=translation initiation factor --- --- --- --- --- --- SPBC17D11.05 // |tif32||eukaryotic translation initiation factor eIF3a|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.90605561769107 -4.74655004947128 2.87076124918446 1.99250676042814 2.28190892633909 Max fold change at or above threshold 2 4.74655004947128 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774991_at SPCC126.13c.S1 --- 4.7459678202734 --- --- --- --- 7.45506048202515 3.08632826805115 6.62939214706421 1.57081985473633 0.239013671875 0.334473013877869 0.129638999700546 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC126.13c /DEF=similar to sin3 associated polypeptide --- --- --- --- --- --- SPCC126.13c // |||histone deacetylase complex subunit |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.74516160754859 -2.41551119470925 -1.82876302291078 -1.12454661251659 -4.7459678202734 Max fold change at or above threshold 3 4.7459678202734 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772169_at SPBP19A11.06.S1 --- 4.74586645006078 --- --- --- --- 1.18318152427673 1.59874320030212 5.61522150039673 3.63092541694641 0.665526986122131 0.805419981479645 0.334473013877869 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP19A11.06 /GEN=lid2 /DEF=transcription factor --- --- --- --- --- --- SPBP19A11.06 // |lid2|SPBP4H10.01|Lid2 complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.70653583800341 1.35122393943687 1.87453167407639 4.74586645006078 3.06878136824014 Max fold change at or above threshold 2 4.74586645006078 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777136_at SPAC13G7.09c.S1 --- 4.74529804110418 --- --- --- --- 0.534449934959412 0.350791782140732 2.53612422943115 0.394399076700211 0.919434010982513 0.932372987270355 0.533936023712158 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G7.09c /DEF=sequence orphan --- --- --- --- --- --- SPAC13G7.09c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.96151532434544 -1.52355317931878 -2.07746331456687 4.74529804110418 -1.35509935629402 Max fold change at or above threshold 1 4.74529804110418 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774905_at YHL038C.S1 Protein required for splicing of COB aI5 intron; Cytochrome B pre-mRNA processing protein 4.74319270070668 83.5520133972168 409.797546386719 CBP2 372 // Group I intron splicing // inferred from direct assay 5739 // mitochondrion // inferred from direct assay 31202 // RNA splicing factor activity, transesterification mechanism // inferred from direct assay 386.264129638672 81.4354705810547 85.6685562133789 433.330963134766 0.000244141003349796 0.0461426004767418 0.018554700538516 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL038C /GEN=CBP2 /DB_XREF=GI:6321749 /SEG=NC_001140:-23614,25506 /DEF=Protein required for splicing of COB aI5 intron /NOTE=Cbp2p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 2685564]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IDA] [pmid 8524264]; go_process: Group I intron splicing [goid GO:0000372] [evidence IDA] [pmid 9092668] --- --- --- --- --- --- S0001030 // CBP2 SGDID:S0001030, Chr VIII from 25506-23614, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016519 // cdna:Genscan chromosome:SGD1:VIII:23614:25428:-1 // ensembl // 11 // --- /// GENEFINDER00000020153 // cdna:GeneFinder chromosome:SGD1:VIII:23614:25143:-1 // ensembl // 11 // --- /// YHL038C // cdna:known chromosome:SGD1:VIII:23614:25506:-1 gene:YHL038C // ensembl // 11 // --- --- No cerevisiae_gene -1.7779834148944 -4.74319270070668 1.08157190472417 -4.50882035033466 1.12185142208292 Max fold change at or above threshold 4 4.74319270070668 Max fold change at or above threshold 0.737228558566544 -0.872696506165164 -0.850339846257585 0.985807793856205 246.674779891968 189.34338357445 0.767583064865301 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1777836_at SPCC1902.02.S1 --- 4.73981328881952 --- --- --- --- 7.25180006027222 2.56258106231689 4.11548185348511 1.52997589111328 0.303710997104645 0.665526986122131 0.466064006090164 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1902.02 /DEF=conserved protein --- --- --- --- --- --- SPCC1902.02 // ||SPCC663.16c|ketopantoate reductase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.45191644658235 -2.82988123455329 -2.82625304751645 -1.76207800652339 -4.73981328881952 Max fold change at or above threshold 3 4.73981328881952 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773988_at SPBC365.01.S1 --- 4.73892413647026 --- --- --- --- 2.57539796829224 2.46822094917297 12.2046155929565 6.18852186203003 0.533936023712158 0.725830018520355 0.0952147990465164 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC365.01 /DEF=sec14 cytosolic factor family --- --- --- --- --- --- D89132 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0515. // gb // 11 // --- /// SPBC365.01 // |||sec14 cytosolic factor family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.63956885029275 -1.04342278156061 2.39702640306862 4.73892413647026 2.40293808499573 Max fold change at or above threshold 3 4.73892413647026 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774710_at YBR104W.S1 Putative mitochondrial inner membrane transporter, member of the mitochondrial carrier (MCF) family 4.73563137732964 623.704071044922 228.931709289551 YMC2 6810 // transport // inferred from sequence similarity 5743 // mitochondrial inner membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity 204.40055847168 631.548583984375 615.859558105469 253.462860107422 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR104W /GEN=YMC2 /DB_XREF=GI:6319580 /SEG=NC_001134:+449624,450613 /DEF=Putative mitochondrial inner membrane transporter, member of the mitochondrial carrier (MCF) family /NOTE=Ymc2p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence ISS] [pmid 10930523]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 10930523]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 10930523] --- --- --- --- --- --- S0000308 // YMC2 SGDID:S0000308, Chr II from 449661-450650, Verified ORF // sgd // 11 // --- /// GENSCAN00000021222 // cdna:Genscan chromosome:SGD1:II:449661:450650:1 // ensembl // 11 // --- /// YBR104W // cdna:known chromosome:SGD1:II:449661:450650:1 gene:YBR104W // ensembl // 11 // --- --- No cerevisiae_gene 4.73563137732964 3.08975958141464 -1.25276564138658 3.01300330444448 1.24003017409828 Max fold change at or above threshold 4 4.73563137732964 Max fold change at or above threshold -0.969537191864861 0.896634747036884 0.828090780788238 -0.755188335960261 426.317890167236 228.889962713765 0.536899736072479 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770642_at SPCC1020.10.S1 --- 4.73557655455434 --- --- --- --- 2.54818892478943 2.27976536750793 1.51776790618896 0.538094758987427 0.432372987270355 0.633789002895355 0.601073980331421 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1020.10 /GEN=oca2 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPCC1020.10 // |oca2||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.60262246606647 -1.11774174707063 -1.61728355176921 -1.67890552593631 -4.73557655455434 Max fold change at or above threshold 1 4.73557655455434 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776459_at YHR086W-A.S1 Identified by fungal homology and RT-PCR 4.73459465373487 31.3648910522461 12.3087403774261 --- --- --- --- 6.88172292709351 32.5821685791016 30.1476135253906 17.7357578277588 0.366210997104645 0.0952147990465164 0.0561522990465164 0.00195312988944352 A A M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR086W-A /GEN=NAM8 /DB_XREF=GI:33438807 /SEG=NC_001140:+280232,280393 /DEF=Identified by fungal homology and RT-PCR /NOTE=Yhr086w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028552 // YHR086W-A SGDID:S0028552, Chr VIII from 280232-280393, Uncharacterized ORF // sgd // 11 // --- /// YHR086W-A // cdna:known chromosome:SGD1:VIII:280232:280393:1 gene:YHR086W-A // ensembl // 11 // --- --- No cerevisiae_gene 3.15106403338299 4.73459465373487 2.42613316958632 4.38082350085598 2.57722637421694 Max fold change at or above threshold 4 4.73459465373487 Max fold change at or above threshold -1.25647106707428 0.902784434110566 0.698242206950705 -0.344555573986995 21.8368157148361 11.9024569523642 0.545063763315891 APAPMP No 3 0 AAMP 2 1 1 No No x = 1
1769950_at SPCC1281.05.S1 --- 4.73346430453314 --- --- --- --- 2.46007418632507 4.07010364532471 4.10672187805176 7.7724437713623 0.432372987270355 0.24609400331974 0.171387001872063 0.165771484375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1281.05 /DEF=involved in protein targeting (predicted) --- --- --- --- --- --- SPCC1281.05 // |||nuclear localization factor |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.83268114250227 1.65446378322629 4.73346430453314 1.66934879479651 3.15943470915119 Max fold change at or above threshold 3 4.73346430453314 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1776213_at SPCC1739.11c.S1 --- 4.73167240951699 --- --- --- --- 3.76851463317871 3.79509043693542 0.796444535255432 2.33632326126099 0.334473013877869 0.4912109375 0.665526986122131 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1739.11c /GEN=cdc11 /DEF=SIN component --- --- --- --- --- --- SPCC1739.11c // |cdc11||SIN component|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -1.64503810597069 1.00705206330439 -1.32474613977746 -4.73167240951699 -1.61301079164222 Max fold change at or above threshold 2 4.73167240951699 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770910_at SPAC227.18.S1 --- 4.72908513795404 --- --- --- --- 4.2804479598999 1.78018772602081 1.16186022758484 0.909445881843567 0.725830018520355 0.753906011581421 0.932372987270355 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC227.18 /GEN=lys3 /DEF=saccharopine dehydrogenase (NAD+, L-lysine forming) (PMID 3142867) --- --- --- --- --- --- SPAC227.18 // |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-lysine forming] |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.38004779953344 -2.40449245735888 -4.72908513795404 -3.68413330474155 -4.70665494820084 Max fold change at or above threshold 1 4.72908513795404 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774922_at YLR406C-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 4.72793013999163 5.09822487831116 1.31628260016441 --- --- --- --- 2.02589559555054 9.57829284667969 0.618156909942627 0.60666960477829 0.753906011581421 0.0375977009534836 0.366210997104645 0.5 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR406C-A /GEN=RPL31B /DB_XREF=GI:33438847 /SEG=NC_001144:-932204,932353 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ylr406c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028683 // span:5-27 // numtm:1 S0028683 // YLR406C-A SGDID:S0028683, Chr XII from 932353-932204, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YLR406C-A // cdna:known chromosome:SGD1:XII:932204:932353:-1 gene:YLR406C-A // ensembl // 11 // --- --- No cerevisiae_gene 2.5433902986176 4.72793013999163 1.55446827210116 -3.2773161036711 -3.33937217159727 Max fold change at or above threshold 1 4.72793013999163 Max fold change at or above threshold -0.274778526612542 1.48187469506049 -0.602212136778794 -0.604884031669156 3.20725373923779 4.2993102781756 1.34049583466924 AMPAAA No 4 0 APAA 3 1 0 No No x = 1
1772553_at SPAC29B12.04.S1 --- 4.72704448837371 --- --- --- --- 20.8719501495361 11.0079860687256 13.8421039581299 4.41543340682983 0.0239257998764515 0.129638999700546 0.030273400247097 0.171387001872063 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29B12.04 /GEN=snz1 /DEF=involved in pyridoxine metabolism (predicted) --- --- --- --- --- --- SPAC29B12.04 // |snz1||pyridoxine biosynthesis protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.67457409196137 -1.89607345242149 -3.55432681341577 -1.5078596586668 -4.72704448837371 Max fold change at or above threshold 4 4.72704448837371 Max fold change at or above threshold PPAAPA No 4 0 PAPA 2 2 0 No No 1 < x = 2
1770218_at SPAC3G6.07.S1 --- 4.72545552429249 --- --- --- --- 1.2595534324646 3.44925999641418 4.67104196548462 0.290493309497833 0.74609375 0.567627012729645 0.533936023712158 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G6.07 /DEF=dubious --- --- --- --- --- --- SPAC3G6.07 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.11202324486879 2.73847850159475 -4.72545552429249 3.7084905213943 -4.33591202028698 Max fold change at or above threshold 2 4.72545552429249 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772488_at SPAC1296.03c.S1 --- 4.72371346016828 --- --- --- --- 3.66203641891479 5.4744291305542 1.0570216178894 0.775245249271393 0.696289002895355 0.5 0.696289002895355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1296.03c /GEN=sxa2 /DEF=serine carboxypeptidase --- --- --- --- --- --- SPAC1296.03c // |sxa2||serine carboxypeptidase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.37678766023341 1.49491389607111 1.0830702747073 -3.46448583163978 -4.72371346016828 Max fold change at or above threshold 2 4.72371346016828 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777520_at SPAC890.02c.S1 --- 4.72227237242432 --- --- --- --- 0.248846903443336 0.851148247718811 1.16685891151428 0.82133275270462 0.932372987270355 0.850341975688934 0.850341975688934 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC890.02c /GEN=alp7 /DEF=coiled-coil (predicted) --- --- --- --- --- --- SPAC890.02c // |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.07620273807528 3.42036905398994 4.72227237242432 4.68906341758028 3.30055444267018 Max fold change at or above threshold 0 4.72227237242432 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770278_at SPBPB21E7.02c.S1 --- 4.72006888304499 --- --- --- --- 4.87369632720947 8.52241992950439 13.3574705123901 2.25669050216675 0.601073980331421 0.567627012729645 0.334473013877869 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB21E7.02c /DEF=pseudo SPAC5H10.03 --- --- --- --- --- --- SPBPB21E7.02c // ||SPAPB21E7.02c|pseudo SPAC5H10.03|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.33955994418075 1.74865632926787 -4.72006888304499 2.74072687660419 -2.15966536950017 Max fold change at or above threshold 3 4.72006888304499 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Sp-URA4-M_at AFFX-r2-Sp-URA4-M --- 4.7190918771447 --- --- --- --- 13.3056335449219 2.81953263282776 7.0306601524353 8.61761951446533 0.111571997404099 0.633789002895355 0.129638999700546 0.091064453125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=URA4 orotidine 5-phosphate decarboxylase (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPCC330.05c // |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- AFFX_control No -4.11762863062932 -4.7190918771447 -1.35527145172228 -1.89251553288535 -1.54400336689121 Max fold change at or above threshold 4 4.7190918771447 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772979_at SPBC651.04.S1 --- 4.71845268889602 --- --- --- --- 1.5202465057373 1.67249727249146 1.1080276966095 2.97848868370056 0.828612983226776 0.5 0.696289002895355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC651.04 /DEF=hypothetical protein --- --- --- --- --- --- SPBC651.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.1441523366878 1.10014873652369 -4.71845268889602 -1.37202933680194 1.95921429351092 Max fold change at or above threshold 1 4.71845268889602 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770794_at SPBC16E9.03c.S1 --- 4.71823385000994 --- --- --- --- 0.928576350212097 3.92635130882263 4.3812403678894 0.938014388084412 0.725830018520355 0.567627012729645 0.334473013877869 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16E9.03c /DEF=hypothetical protein --- --- --- --- --- --- SPBC16E9.03c // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.84063984898574 4.22835592132603 3.44545882046041 4.71823385000994 1.01016398691412 Max fold change at or above threshold 2 4.71823385000994 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777726_at YNL210W.S1 Protein with RNA-binding motifs required for meiosis-specific mRNA splicing; required for chromosome pairing and meiotic recombination 4.71660568472588 58.2504386901855 12.1801042556763 MER1 7126 // meiosis // traceable author statement /// 48026 // positive regulation of nuclear mRNA splicing, via spliceosome // traceable author statement 5634 // nucleus // inferred from direct assay 31202 // RNA splicing factor activity, transesterification mechanism // inferred from direct assay 12.6631240844727 56.7739143371582 59.7269630432129 11.6970844268799 0.171387001872063 0.00122069998178631 0.00195312988944352 0.0676269978284836 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL210W /GEN=MER1 /DB_XREF=GI:6324119 /SEG=NC_001146:+250930,251742 /DEF=Disp. for axial elements in meiosis but required for full chr. pairing & chr. condensation seen by in situ hybridization, wt level of synaptonemal complexes, heteroduplex DNA, gene conversion & reciprocal recombination & spore viability /NOTE=Mer1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 7891689]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IDA] [pmid 7891689]; go_process: meiosis [goid GO:0007126] [evidence TAS] [pmid 8177171]; go_process: positive regulation of nuclear mRNA splicing, via spliceosome [goid GO:0048026] [evidence TAS] [pmid 14973223] --- --- --- --- --- --- S0005154 // MER1 SGDID:S0005154, Chr XIV from 250930-251742, Verified ORF // sgd // 11 // --- /// YNL210W // cdna:known chromosome:SGD1:XIV:250930:251742:1 gene:YNL210W // ensembl // 11 // --- --- No cerevisiae_gene 4.44611186656553 4.48340503958052 1.6420720564942 4.71660568472588 -1.08258807257754 Max fold change at or above threshold 4 4.71660568472588 Max fold change at or above threshold -0.846903436632443 0.809594244678878 0.920490429180609 -0.883181237227044 35.2152714729309 26.6289477796108 0.756176132280559 APPPPA Called_P_>2EXP 2 0 APPA 2 2 0 Yes No 1 < x = 2
1770071_at YGR144W.S1 Protein required for thiamine biosynthesis and for mitochondrial genome stability 4.71549238199152 389.521987915039 1717.65179443359 THI4 2 // mitochondrial genome maintenance // inferred from mutant phenotype /// 9228 // thiamin biosynthesis // traceable author statement 5739 // mitochondrion // inferred from mutant phenotype /// 5829 // cytosol // inferred from direct assay --- 1679.892578125 356.249664306641 422.794311523438 1755.41101074219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR144W /GEN=THI4 /DB_XREF=GI:6321583 /SEG=NC_001139:+780402,781382 /DEF=Protein highly expressed in early stationary phase during growth on molasses /NOTE=Thi4p; go_component: mitochondrion [goid GO:0005739] [evidence IMP] [pmid 9367751]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 9367751]; go_process: thiamin biosynthesis [goid GO:0009228] [evidence TAS] [pmid 9655908] --- --- --- --- --- S0003376 // span:63-85 // numtm:1 S0003376 // THI4 SGDID:S0003376, Chr VII from 780404-781384, Verified ORF // sgd // 11 // --- /// GENSCAN00000019451 // cdna:Genscan chromosome:SGD1:VII:780404:781384:1 // ensembl // 11 // --- /// GENEFINDER00000021410 // cdna:GeneFinder chromosome:SGD1:VII:780404:781384:1 // ensembl // 11 // --- /// YGR144W // cdna:known chromosome:SGD1:VII:780404:781384:1 gene:YGR144W // ensembl // 11 // --- --- No cerevisiae_gene -1.18242718714377 -4.71549238199152 1.28972509170392 -3.97330931930449 1.04495432243738 Max fold change at or above threshold 4 4.71549238199152 Max fold change at or above threshold 0.815612276542436 -0.908113745370029 -0.82145537336569 0.913956842193283 1053.58689117432 767.896346050276 0.728840072406735 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775259_at SPBC1709.03.S1 --- 4.71512807242206 --- --- --- --- 0.819291234016418 3.86306309700012 1.40027344226837 0.275382667779922 0.870360970497131 0.466064006090164 0.633789002895355 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1709.03 /DEF=sequence orphan --- --- --- --- --- --- SPBC1709.03 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.67126713930428 4.71512807242206 -3.55647212263122 1.70912782186598 -2.97510094088845 Max fold change at or above threshold 1 4.71512807242206 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779070_at SPCC584.16c.S1 --- 4.71343848283939 --- --- --- --- 2.75981855392456 13.0082349777222 11.2422208786011 4.03511953353882 0.219482004642487 0.030273400247097 0.171387001872063 0.171387001872063 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC584.16c /DEF=sequence orphan --- --- --- --- --- --- SPCC584.16c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.7582858926918 4.71343848283939 3.61209096646906 4.07353623397242 1.4620959511272 Max fold change at or above threshold 4 4.71343848283939 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1770618_at SPBC1604.14c.S1 --- 4.71246907520639 --- --- --- --- 3.14812922477722 14.8354616165161 7.98491859436035 4.15110731124878 0.533936023712158 0.194580003619194 0.129638999700546 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1604.14c /GEN=shk1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- U22371 // Schizosaccharomyces pombe Pak1p (PAK1) mRNA, complete cds. // gb // 10 // --- /// SPBC1604.14c // |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.78390287765017 4.71246907520639 -3.73742702046643 2.53640115263229 1.31859495429148 Max fold change at or above threshold 4 4.71246907520639 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773451_at SPAC589.02c.S1 --- 4.71175493101219 --- --- --- --- 5.62757158279419 1.23877620697021 5.33160495758057 1.19436848163605 0.5 0.633789002895355 0.219482004642487 0.5927734375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC589.02c /GEN=srb9 /DEF=RNA polymerase II holoenzyme component --- --- --- --- --- --- SPAC589.02c // |srb9|spTrap240|mediator complex submodule|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.6519577498413 -4.54284765168201 -3.08129402426304 -1.05551173193971 -4.71175493101219 Max fold change at or above threshold 2 4.71175493101219 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779895_at SPAC4A8.03c.S1 --- 4.7110402336765 --- --- --- --- 0.3773452937603 0.692744791507721 1.77768886089325 0.464524775743485 0.981445014476776 0.943848013877869 0.805419981479645 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4A8.03c /GEN=ptc4 /DEF=phosphoprotein phosphatase activity --- --- --- --- --- --- SPAC4A8.03c // |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.23968000270424 1.8358378995652 3.66872483090022 4.7110402336765 1.23103370685885 Max fold change at or above threshold 0 4.7110402336765 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775820_at YGR065C.S1 High-affinity plasma membrane H+-biotin (vitamin H) symporter; mutation results in fatty acid auxotrophy; 12 transmembrane domain containing major facilitator subfamily member; mRNA levels negatively regulated by iron deprivation and biotin 4.70945252409884 292.092086791992 1375.02624511719 VHT1 15878 // biotin transport // inferred from direct assay 5886 // plasma membrane // inferred from direct assay 15225 // biotin transporter activity // inferred from direct assay 1337.60998535156 284.026641845703 300.157531738281 1412.44250488281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR065C /GEN=VHT1 /DB_XREF=GI:6321502 /SEG=NC_001139:-618079,619860 /DEF=vitamin H transporter /NOTE=Vht1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 10373489]; go_function: biotin transporter activity [goid GO:0015225] [evidence IDA] [pmid 10373489]; go_process: biotin transport [goid GO:0015878] [evidence IDA] [pmid 10373489] --- --- --- --- --- S0003297 // span:121-138,166-188,225-247,293-315,367-389,404-426,433-451,461-480,493-515,525-547 // numtm:10 S0003297 // VHT1 SGDID:S0003297, Chr VII from 619862-618081, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021424 // cdna:GeneFinder chromosome:SGD1:VII:618081:619862:-1 // ensembl // 11 // --- /// YGR065C // cdna:known chromosome:SGD1:VII:618081:619862:-1 gene:YGR065C // ensembl // 11 // --- --- No cerevisiae_gene 1.55444796312657 -4.70945252409884 -1.55413227433495 -4.45635989077187 1.05594494684606 Max fold change at or above threshold 4 4.70945252409884 Max fold change at or above threshold 0.805176411937154 -0.877829395325884 -0.85206173154032 0.92471471492905 833.55916595459 626.012898445807 0.751011954537022 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775072_at SPCC16C4.02c.S1 --- 4.7067955145283 --- --- --- --- 1.39812874794006 6.58070611953735 6.31601858139038 6.35725069046021 0.533936023712158 0.149657994508743 0.149657994508743 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16C4.02c /DEF=sequence orphan --- --- --- --- --- --- SPCC16C4.02c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.73606283646307 4.7067955145283 -1.52228526956992 4.51747994646137 4.54697087076328 Max fold change at or above threshold 3 4.7067955145283 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774932_at YPL183C.S1 Hypothetical protein 4.70662652174183 29.827392578125 146.859275817871 --- --- 5737 // cytoplasm // inferred from direct assay --- 131.777328491211 27.998254776001 31.656530380249 161.941223144531 0.014160200022161 0.111571997404099 0.0375977009534836 0.00415039015933871 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL183C /GEN=UIP4 /DB_XREF=GI:6325074 /SEG=NC_001148:-199494,202535 /DEF=Hypothetical ORF /NOTE=Ypl183cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006104 // YPL183C SGDID:S0006104, Chr XVI from 202535-199494, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017046 // cdna:Genscan chromosome:SGD1:XVI:199494:202535:-1 // ensembl // 11 // --- /// GENEFINDER00000020953 // cdna:GeneFinder chromosome:SGD1:XVI:199494:200840:-1 // ensembl // 11 // --- /// YPL183C // cdna:known chromosome:SGD1:XVI:199494:202535:-1 gene:YPL183C // ensembl // 11 // --- --- No cerevisiae_gene 1.85924633856324 -4.70662652174183 1.22153471236461 -4.16272177994051 1.22890048689469 Max fold change at or above threshold 4 4.70662652174183 Max fold change at or above threshold 0.632249017786076 -0.878416038258362 -0.825164174246905 1.07133119471919 88.343334197998 68.6976065938452 0.777620713747093 PPAPPP Called_P_>2EXP 3 0 PAPP 1 3 0 Yes Yes 2 < x = 3
1779108_at SPAC1952.02.S1 --- 4.70390639586595 --- --- --- --- 3.03788113594055 4.62625312805176 1.35037541389465 3.34091591835022 0.5 0.432372987270355 0.753906011581421 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1952.02 /DEF=G-patch domain --- --- --- --- --- --- SPAC1952.02 // |||G-patch domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.3493024571024 1.52285521422135 -4.70390639586595 -2.24965672855293 1.09975202084918 Max fold change at or above threshold 3 4.70390639586595 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772725_at SPAC144.06.S1 --- 4.70342474424543 --- --- --- --- 0.814984261989594 1.08250176906586 3.83321714401245 0.378867596387863 0.753906011581421 0.567627012729645 0.219482004642487 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC144.06 /GEN=apl5 /DEF=AP-3 adaptor complex (predicted) --- --- --- --- --- --- SPAC144.06 // |apl5||AP-3 adaptor complex Apl5 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.88421519315898 1.32824867859802 -1.60074670942453 4.70342474424543 -2.15110574184671 Max fold change at or above threshold 1 4.70342474424543 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775567_at SPAC821.09.S1 --- 4.70272841426643 --- --- --- --- 19.5314598083496 4.1532187461853 21.7923183441162 10.1677846908569 0.000732421991415322 0.194580003619194 0.00585938012227416 0.00195312988944352 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC821.09 /GEN=eng1 /DEF=glycosyl hydrolase family 81 --- --- --- --- --- --- SPAC821.09 // |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.16758654927379 -4.70272841426643 -2.08064357840843 1.11575471357241 -1.92091595191947 Max fold change at or above threshold 4 4.70272841426643 Max fold change at or above threshold PPAPPP No 2 0 PAPP 1 3 0 No No 2 < x = 3
1775059_at SPAC1783.08c.S1 --- 4.69736593494448 --- --- --- --- 0.548272252082825 2.07275009155273 1.0007518529892 0.644628345966339 0.976073980331421 0.870360970497131 0.932372987270355 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1783.08c /GEN=rpl1502 /DEF=60S ribosomal protein L15b --- --- --- --- --- --- SPAC1783.08c // |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.90258479605657 3.78051248021141 4.69736593494448 1.82528269338354 1.17574497618194 Max fold change at or above threshold 0 4.69736593494448 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774395_at SPBC577.10.S1 --- 4.69595181010011 --- --- --- --- 11.8204584121704 3.94165110588074 7.55476808547974 2.51715922355652 0.219482004642487 0.111571997404099 0.0239257998764515 0.24609400331974 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC577.10 /DEF=20S proteasome component (beta 7) --- --- --- --- --- --- SPBC577.10 // |||20S proteasome component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.05741410307033 -2.99885963893022 -2.73682884520438 -1.56463550944593 -4.69595181010011 Max fold change at or above threshold 4 4.69595181010011 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1775410_at YHL008C.S1 Hypothetical protein 4.69524272544072 229.054870605469 285.595813751221 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay 5215 // transporter activity // inferred from sequence similarity 470.898864746094 226.4599609375 231.649780273438 100.292762756348 0.0107421996071935 0.0561522990465164 0.030273400247097 0.0561522990465164 P M P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL008C /GEN=YAP3 /DB_XREF=GI:6321779 /SEG=NC_001140:-92622,94505 /DEF=Hypothetical ORF /NOTE=Yhl008cp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 9678606]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 2.29999995231628 S0001000 // span:32-54,66-88,112-134,166-185,200-222,243-265 // numtm:6 S0001000 // YHL008C SGDID:S0001000, Chr VIII from 94505-92622, reverse complement, Uncharacterized ORF // sgd // 9 // --- /// GENSCAN00000016549 // cdna:Genscan chromosome:SGD1:VIII:92622:93953:-1 // ensembl // 9 // --- /// GENEFINDER00000020243 // cdna:GeneFinder chromosome:SGD1:VIII:92622:94505:-1 // ensembl // 9 // --- /// YHL008C // cdna:known chromosome:SGD1:VIII:92622:94505:-1 gene:YHL008C // ensembl // 9 // --- --- No cerevisiae_gene -1.32096827201525 -2.07939126544341 -1.25638692356959 -2.03280514313568 -4.69524272544072 Max fold change at or above threshold 4 4.69524272544072 Max fold change at or above threshold 1.37971550118816 -0.199394777199345 -0.165867802038426 -1.01445292195039 257.325342178345 154.795334533698 0.601554954608448 PPMPPM Called_P_>2EXP 4 0 PMPM 0 2 2 Yes No 1 < x = 2
1774787_at YMR233W.S1 Interacts with Top1p in 2-hybrid assay. 4.69389378927475 135.981018066406 47.4546298980713 --- --- 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 53.9166297912598 135.007690429688 136.954345703125 40.9926300048828 0.00195312988944352 0.00415039015933871 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR233W /GEN=FUS2 /DB_XREF=GI:6323889 /SEG=NC_001145:+739184,739864 /DEF=Interacts with Top1p in 2-hybrid assay. /NOTE=Ymr233wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004846 // YMR233W SGDID:S0004846, Chr XIII from 739184-739864, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000021932 // cdna:GeneFinder chromosome:SGD1:XIII:739211:739864:1 // ensembl // 11 // --- /// YMR233W // cdna:known chromosome:SGD1:XIII:739184:739864:1 gene:YMR233W // ensembl // 11 // --- --- No cerevisiae_gene 4.69389378927475 2.50400833569114 -1.10383873898957 2.54011324953635 -1.31527617976298 Max fold change at or above threshold 4 4.69389378927475 Max fold change at or above threshold -0.735596501431097 0.842403923677153 0.880285076357106 -0.987092498603162 91.7178239822388 51.388490996677 0.560289033968233 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771228_at SPAC23C11.06c.S1 --- 4.69330401012579 --- --- --- --- 2.7544686794281 12.9275588989258 7.86445140838623 8.37764453887939 0.334473013877869 0.111571997404099 0.0805663987994194 0.00585938012227416 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C11.06c /DEF=hypothetical protein --- --- --- --- --- --- SPAC23C11.06c // |||conserved yeast protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.32249428918473 4.69330401012579 2.67555601411537 2.85516094886913 3.04147387895469 Max fold change at or above threshold 4 4.69330401012579 Max fold change at or above threshold AAAPAP No 4 0 AAAP 3 1 0 No No x = 1
1769440_at SPCC1795.10c.S1 --- 4.69202462464189 --- --- --- --- 2.181147813797 6.68797302246094 4.32889080047607 4.50370073318481 0.274170011281967 0.129638999700546 0.0375977009534836 0.171387001872063 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1795.10c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC1795.10c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.36757040605037 3.06626308412282 4.69202462464189 1.98468474859585 2.0648305927257 Max fold change at or above threshold 3 4.69202462464189 Max fold change at or above threshold APAMPA No 4 0 AAPA 3 1 0 No No x = 1
1771414_at SPAC3F10.08c.S1 --- 4.69146053417194 --- --- --- --- 3.97811436653137 4.41554641723633 1.00678300857544 0.847947955131531 0.194580003619194 0.5 0.780517995357513 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3F10.08c /DEF=conserved fungal protein --- --- --- --- --- --- SPAC3F10.08c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.35273661959144 1.10995964680783 -1.97395731603945 -3.95131257942092 -4.69146053417194 Max fold change at or above threshold 2 4.69146053417194 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778020_at SPCC16A11.09c.S1 --- 4.68991890763995 --- --- --- --- 1.49310839176178 0.57442033290863 1.9580512046814 7.00255727767944 0.601073980331421 0.780517995357513 0.432372987270355 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16A11.09c /DEF=mitochondrial inner membrane pre-sequence translocase complex --- --- --- --- --- --- SPCC16A11.09c // |||mitochondrial inner membrane pre-sequence translocase complex subunit|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.13275334067166 -2.59933067515436 -1.06848047264247 1.31139253887054 4.68991890763995 Max fold change at or above threshold 1 4.68991890763995 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772944_at YOR316C-A.S1 Identified by fungal homology and RT-PCR 4.68978998269096 17.1588530540466 22.6839389801025 --- --- --- --- 18.9588451385498 19.5913639068604 14.7263422012329 26.4090328216553 0.219482004642487 0.24609400331974 0.398925989866257 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR316C-A /GEN=COT1 /DB_XREF=GI:33438887 /SEG=NC_001147:-907721,907930 /DEF=Identified by fungal homology and RT-PCR /NOTE=Yor316c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028584 // YOR316C-A SGDID:S0028584, Chr XV from 907930-907721, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YOR316C-A // cdna:known chromosome:SGD1:XV:907721:907930:-1 gene:YOR316C-A // ensembl // 11 // --- M96371 // gb // 11 // Negative Strand Matching Probes No cerevisiae_gene 4.68978998269096 1.03336272666864 1.6804160406121 -1.2874103344524 1.39296632409095 Max fold change at or above threshold 4 4.68978998269096 Max fold change at or above threshold -0.199105694724133 -0.0682678433437063 -1.07460792173157 1.34198145979941 19.9213960170746 4.8343714119198 0.242672321145379 APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780189_at SPBC16E9.10c.S1 --- 4.68674775758648 --- --- --- --- 3.72484254837036 17.4573974609375 14.2991199493408 6.84959125518799 0.35791015625 0.366210997104645 0.0952147990465164 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16E9.10c /DEF=AAA family ATPase --- --- --- --- --- --- SPBC16E9.10c // |||AAA family ATPase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.24630313966696 4.68674775758648 1.63163521349958 3.83885218332162 1.83889417236837 Max fold change at or above threshold 4 4.68674775758648 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771990_at YDR379C-A.S1 Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 4.6848494883216 1813.03076171875 506.922271728516 --- --- 5739 // mitochondrion // inferred from direct assay --- 465.947998046875 2182.89624023438 1443.16528320313 547.896545410156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR379C-A /GEN=RGA2 /DB_XREF=GI:13129166 /SEG=NC_001136:-1233266,1233505 /DEF=Hypothetical ORF identified by homology. See FEBS Letters [2000] 487:31-36. /NOTE=Ydr379c-ap; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 4.0 --- S0007605 // YDR379C-A SGDID:S0007605, Chr IV from 1233507-1233268, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDR379C-A // cdna:known chromosome:SGD1:IV:1233268:1233507:-1 gene:YDR379C-A // ensembl // 11 // --- --- No cerevisiae_gene -2.13813400342702 4.6848494883216 1.3351021968297 3.09726683933073 1.17587487811255 Max fold change at or above threshold 4 4.6848494883216 Max fold change at or above threshold -0.853669832500423 1.25821300642762 0.348328203151467 -0.752871377078668 1159.97651672363 812.9940783358 0.700871152661014 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773264_at SPAC3G6.10c.S1 --- 4.68390258839189 --- --- --- --- 2.00768375396729 3.58303880691528 2.59513258934021 4.31543970108032 0.601073980331421 0.366210997104645 0.24609400331974 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G6.10c /DEF=sequence orphan --- --- --- --- --- --- SPAC3G6.10c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.3447921322776 1.78466294795434 -4.68390258839189 1.29260028339229 2.14946188240692 Max fold change at or above threshold 3 4.68390258839189 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780061_at SPAC3H5.12c.S1 --- 4.68377517397246 --- --- --- --- 4.65292692184448 1.08420181274414 1.44292557239532 0.993413805961609 0.533936023712158 0.932372987270355 0.828612983226776 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H5.12c /GEN=rpl501 /DEF=60S ribosomal protein L5 --- --- --- --- --- --- SPAC3H5.12c // |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.0798630830881 -4.29156903000172 -1.7184299812376 -3.22464790343996 -4.68377517397246 Max fold change at or above threshold 1 4.68377517397246 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771223_at SPAC23C4.10.S1 --- 4.68071465445586 --- --- --- --- 1.6880190372467 7.90113544464111 2.73074913024902 4.54979944229126 0.77392578125 0.398925989866257 0.696289002895355 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C4.10 /GEN=sec2 /DEF=guanyl-nucleotide exchange factor activity (predicted) --- --- --- --- --- --- SPAC23C4.10 // |sec2||guanyl-nucleotide exchange factor activity |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 2.432890940973 4.68071465445586 1.50355695886973 1.61772413106377 2.69534841841141 Max fold change at or above threshold 3 4.68071465445586 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774187_at SPAC15A10.05c.S1 --- 4.67965323115848 --- --- --- --- 5.79922151565552 6.54272174835205 3.77051043510437 1.23924171924591 0.0952147990465164 0.219482004642487 0.0805663987994194 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15A10.05c /DEF=conserved protein (broad species distribution) --- --- --- --- --- --- SPAC15A10.05c // |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.8400956331528 1.12820690340753 -1.05752725805568 -1.53804680174423 -4.67965323115848 Max fold change at or above threshold 3 4.67965323115848 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771270_at SPAC1527.01.S1 --- 4.67809814872666 --- --- --- --- 10.2361068725586 4.80205869674683 4.98739147186279 5.82998371124268 0.5 0.567627012729645 0.5 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1527.01 /GEN=mok11 /DEF=a-1,3-glucan synthase --- --- --- --- --- --- SPAC1527.01 // |mok11|SPAC23D3.15|alpha-1,3-glucan synthase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.67809814872666 -2.13160802875922 -3.50476849758122 -2.05239691536293 -1.75576937767751 Max fold change at or above threshold 4 4.67809814872666 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775503_at SPAC3A12.18.S1 --- 4.67659949040078 --- --- --- --- 1.90248584747314 6.57512426376343 8.8971643447876 4.59185600280762 0.432372987270355 0.334473013877869 0.171387001872063 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A12.18 /GEN=zwf1 /DEF=glucose-6-phosphate 1-dehydrogenase (predicted) --- --- --- --- --- --- SPAC3A12.18 // |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.84495120309228 3.45607000046619 1.74595280668063 4.67659949040078 2.41360849485764 Max fold change at or above threshold 3 4.67659949040078 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776253_at SPAC56F8.05c.S1 --- 4.67342674957721 --- --- --- --- 6.36747074127197 13.5017786026001 7.91298961639404 4.30014944076538 0.567627012729645 0.334473013877869 0.601073980331421 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC56F8.05c /DEF=conserved yeast protein --- --- --- --- --- --- SPAC56F8.05c // |||conserved yeast protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.67342674957721 2.1204304112598 -3.35648709799327 1.24272100146523 -1.48075568744388 Max fold change at or above threshold 4 4.67342674957721 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774379_at SPAC4F8.03.S1 --- 4.67169054442642 --- --- --- --- 1.48384058475494 2.70691156387329 6.93204402923584 3.08074617385864 0.567627012729645 0.398925989866257 0.030273400247097 0.171387001872063 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F8.03 /DEF=hypothetical protein --- --- --- --- --- --- SPAC4F8.03 // ||SPAC644.01c|UPF0023 family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.41840248953435 1.82426036306342 4.61424413230857 4.67169054442642 2.07619754137364 Max fold change at or above threshold 3 4.67169054442642 Max fold change at or above threshold AAAPPA No 4 0 AAPA 3 1 0 No No x = 1
1778985_at SPBC1677.02.S1 --- 4.670252981543 --- --- --- --- 0.304246187210083 0.741391718387604 0.9881511926651 0.173784807324409 0.932372987270355 0.943848013877869 0.466064006090164 0.86572265625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1677.02 /GEN=dpm3 /DEF=dolichol-phosphate mannosyltransferase (regulatory subunit) (subunit 3) (predicted) --- --- --- --- --- --- SPBC1677.02 // |dpm3||dolichol-phosphate mannosyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.670252981543 2.43681515021146 1.78896870232058 3.24786713590852 -1.75070647368005 Max fold change at or above threshold 0 4.670252981543 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772957_at SPBC15D4.14.S1 --- 4.6702100625178 --- --- --- --- 0.964938998222351 2.81329464912415 2.95116448402405 4.50646781921387 0.633789002895355 0.398925989866257 0.0952147990465164 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC15D4.14 /GEN=taf73 /DEF=transcription factor TFIID complex (PMID 11279037) --- --- --- --- --- --- SPBC15D4.14 // |taf73||TBP-associated factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.63398939649725 2.91551554482398 2.14360920600976 3.05839487207046 4.6702100625178 Max fold change at or above threshold 3 4.6702100625178 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770147_at YHR169W.S1 Putative ATP-dependent RNA helicase of the DEAD-box family involved in biogenesis of the 40S ribosomal subunit 4.66971548024316 81.0503768920898 246.025108337402 DBP8 6365 // 35S primary transcript processing // traceable author statement /// 6365 // 35S primary transcript processing // inferred from mutant phenotype 5730 // nucleolus // traceable author statement /// 5730 // nucleolus // inferred from direct assay 4004 // ATP-dependent RNA helicase activity // traceable author statement /// 4004 // ATP-dependent RNA helicase activity // inferred from mutant phenotype 236.352188110352 50.6138305664063 111.486923217773 255.698028564453 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR169W /GEN=DBP8 /DB_XREF=GI:6321963 /SEG=NC_001140:+442180,443475 /DEF=Dead-Box Protein 8, ATP-dependent helicase involved in rRNA processing /NOTE=Dbp8p; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 10690410]; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11222764]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 10690410]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence IMP] [pmid 11222764]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence IMP] [pmid 11222764] --- --- --- --- --- --- S0001212 // DBP8 SGDID:S0001212, Chr VIII from 442181-443476, Verified ORF // sgd // 11 // --- /// GENSCAN00000016695 // cdna:Genscan chromosome:SGD1:VIII:442181:443476:1 // ensembl // 11 // --- /// GENEFINDER00000020213 // cdna:GeneFinder chromosome:SGD1:VIII:442181:443476:1 // ensembl // 11 // --- /// YHR169W // cdna:known chromosome:SGD1:VIII:442181:443476:1 gene:YHR169W // ensembl // 11 // --- --- No cerevisiae_gene 1.17723640871536 -4.66971548024316 1.44962099352358 -2.11999920070152 1.08185175101941 Max fold change at or above threshold 4 4.66971548024316 Max fold change at or above threshold 0.737337882827824 -1.14349670128826 -0.527080041774589 0.93323886023502 163.537742614746 98.7531594285498 0.603855463880209 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778959_at SPCC663.10.S1 --- 4.66461823615597 --- --- --- --- 6.64098405838013 10.5721082687378 10.1814041137695 5.77633142471313 0.171387001872063 0.091552734375 0.24609400331974 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC663.10 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC663.10 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.66461823615597 1.5919490508936 -1.06143432368201 1.5331167827337 -1.14968888903564 Max fold change at or above threshold 4 4.66461823615597 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771440_at YGL171W.S1 ATP-dependent RNA helicase of the DEAD box family; required for 18S rRNA synthesis 4.66352839197209 137.317111968994 150.287063598633 ROK1 6365 // 35S primary transcript processing // traceable author statement 5730 // nucleolus // traceable author statement 4004 // ATP-dependent RNA helicase activity // traceable author statement /// 16887 // ATPase activity // inferred from direct assay 130.967102050781 102.808433532715 171.825790405273 169.607025146484 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL171W /GEN=ROK1 /DB_XREF=GI:6321267 /SEG=NC_001139:+182394,184088 /DEF=ATP-dependent RNA helicase of the DEAD box family; required for 18S rRNA synthesis /NOTE=Rok1p; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 10690410]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 10690410]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 10373593]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0003139 // ROK1 SGDID:S0003139, Chr VII from 182396-184090, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021688 // cdna:GeneFinder chromosome:SGD1:VII:182396:184132:1 // ensembl // 11 // --- /// YGL171W // cdna:known chromosome:SGD1:VII:182396:184090:1 gene:YGL171W // ensembl // 11 // --- --- No cerevisiae_gene 4.66352839197209 -1.2738945391003 1.22823981190857 1.31197673090949 1.29503533704763 Max fold change at or above threshold 4 4.66352839197209 Max fold change at or above threshold -0.387198333501669 -1.23667255580339 0.845402650168135 0.778468239136922 143.802087783813 33.1483496247458 0.230513688191925 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-Scv2-TrpnX-3_at AFFX-Scv2-TrpnX-3 --- 4.66203025755971 --- --- --- --- 0.830714643001556 3.87281680107117 1.20990979671478 0.183729037642479 0.633789002895355 0.466064006090164 0.601073980331421 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=trpC, trpF /DB_XREF=gb:K01391.1 /NOTE=SIF corresponding to nucleotides 3790-4368 of gb:K01391.1, not 100% identical /DEF=B.subtilis tryptophan (trp) operon, complete cds. --- --- --- --- --- --- AFFX-Scv2-TrpnX-3 // --- // affx // --- // --- --- AFFX_control No -1.98945993327917 4.66203025755971 -1.70340414901286 1.45646860436107 -4.52141182287177 Max fold change at or above threshold 1 4.66203025755971 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770603_at YPL189W.S1 Probable membrane protein with a possible role in proton symport of glycerol; member of the MBOAT family of putative membrane-bound O-acyltransferases; Gup1p homolog 4.66007877137431 133.396469116211 58.7757015228271 GUP2 15793 // glycerol transport // inferred from genetic interaction 16020 // membrane // inferred from sequence similarity 8374 // O-acyltransferase activity // inferred from sequence similarity 55.0862312316895 134.009552001953 132.783386230469 62.4651718139648 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL189W /GEN=GUP2 /DB_XREF=GI:6325067 /SEG=NC_001148:+189153,190982 /DEF=Multimembrane-spanning protein and putative glycerol transporter that is essential for proton symport of glycerol; Gup1p homolog /NOTE=Gup2p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 10931309]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0006110 // span:76-95,129-151,164-186,201-218,323-345,365-387,408-427,501-523,535-557,577-594 // numtm:10 S0006110 // GUP2 SGDID:S0006110, Chr XVI from 189153-190982, Verified ORF // sgd // 11 // --- /// YPL189W // cdna:known chromosome:SGD1:XVI:189153:190982:1 gene:YPL189W // ensembl // 11 // --- --- No cerevisiae_gene 4.66007877137431 2.43272318700324 -1.16885864212865 2.41046416248717 1.13395253981417 Max fold change at or above threshold 4 4.66007877137431 Max fold change at or above threshold -0.94928138307517 0.878052902973438 0.849663135123517 -0.778434655021785 96.086085319519 43.1904120514949 0.449497051606089 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773534_at SPBC1683.11c.S1 --- 4.66002775673609 --- --- --- --- 1.79654145240784 1.80621206760406 2.79105615615845 1.60927510261536 0.567627012729645 0.84375 0.432372987270355 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1683.11c /DEF=isocitrate lyase (predicted) --- --- --- --- --- --- SPBC1683.11c // |||isocitrate lyase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.66002775673609 1.00538290679754 -3.51729217774104 1.55357181011198 -1.11636689680226 Max fold change at or above threshold 1 4.66002775673609 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777532_at SPCC622.06c.S1 --- 4.65988774118579 --- --- --- --- 3.24451971054077 1.83201360702515 0.912222027778625 1.97326624393463 0.5 0.805419981479645 0.870360970497131 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC622.06c /DEF=dubious --- --- --- --- --- --- SPCC622.06c // |||dubious|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.08384273302087 -1.77101288882307 -4.65988774118579 -3.55672151267996 -1.64423818656691 Max fold change at or above threshold 1 4.65988774118579 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770469_at SPBC2D10.04.S1 --- 4.65892169750244 --- --- --- --- 6.06245231628418 21.0535984039307 12.3730230331421 1.30125653743744 0.334473013877869 0.1884765625 0.24609400331974 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2D10.04 /DEF=arrestin family --- --- --- --- --- --- SPBC2D10.04 // |||arrestin family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.95455728158788 3.47278581431135 -2.54120074729653 2.04092706839232 -4.65892169750244 Max fold change at or above threshold 3 4.65892169750244 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777969_at SPAC1142.07c.S1 --- 4.65818331274527 --- --- --- --- 7.98547601699829 37.197811126709 15.2648687362671 7.30227613449097 0.5 0.194580003619194 0.274170011281967 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1142.07c /GEN=vps32 /DEF=SNF7 family --- --- --- --- --- --- SPAC1142.07c // |vps32|snf7|SNF7 family class E vps |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.19538884571173 4.65818331274527 -3.70390758299106 1.91157905975467 -1.09355985310941 Max fold change at or above threshold 4 4.65818331274527 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778770_at SPCC18.18c.S1 --- 4.65707271958918 --- --- --- --- 0.862062454223633 1.28141915798187 1.14886605739594 3.36792755126953 0.919434010982513 0.633789002895355 0.725830018520355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18.18c /GEN=fum1 /DEF=fumarate hydratase (predicted) --- --- --- --- --- --- SPCC18.18c // |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.65707271958918 1.48645745062161 1.04622399434474 1.33269469255635 3.90682546811839 Max fold change at or above threshold 1 4.65707271958918 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769646_at SPBC29B5.04c.S1 --- 4.65571920759034 --- --- --- --- 0.914298832416534 0.520476579666138 0.448885887861252 4.25671863555908 0.533936023712158 0.919434010982513 0.828612983226776 0.107177734375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29B5.04c /DEF=conserved fungal protein --- --- --- --- --- --- SPBC29B5.04c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.42380338996821 -1.75665701039424 2.85753963211964 -2.03681794670083 4.65571920759034 Max fold change at or above threshold 1 4.65571920759034 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772527_at SPCC576.12c.S1 --- 4.65212507999637 --- --- --- --- 5.00874662399292 4.39961385726929 1.24845063686371 1.12086021900177 0.432372987270355 0.5 0.567627012729645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC576.12c /DEF=hypothetical protein --- --- --- --- --- --- SPCC576.12c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -4.65212507999637 -1.13845141562076 -3.83867841708327 -4.0119700980534 -4.46866303137574 Max fold change at or above threshold 2 4.65212507999637 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778336_at SPACUNK4.16c.S1 --- 4.65181337260481 --- --- --- --- 1.67503941059113 2.13158941268921 5.57890748977661 1.11133098602295 0.753906011581421 0.725830018520355 0.5 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPACUNK4.16c /DEF=glycosyl transferase family 20 --- --- --- --- --- --- SPACUNK4.16c // |||glycosyl transferase family 20|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.19423404994104 1.27256075242849 4.65181337260481 3.33061267364915 -1.50723720624895 Max fold change at or above threshold 1 4.65181337260481 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777188_at YHR213W.S1 Hypothetical protein /// Hypothetical protein 4.65060738569013 2.4450720846653 2.86630499362946 --- --- --- --- 3.49674963951111 0.751890957355499 4.1382532119751 2.2358603477478 0.24609400331974 0.850341975688934 0.466064006090164 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR213W /GEN=FLO5 /DB_XREF=GI:6322007 /SEG=NC_001140:+539149,539745 /DEF=Hypothetical ORF /NOTE=Yhr213wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000088 // YAR062W SGDID:S0000088, Chr I from 218540-219136, Pseudogene ORF // sgd // 11 // --- /// S0001256 // YHR213W SGDID:S0001256, Chr VIII from 539150-539746, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018179 // cdna:GeneFinder chromosome:SGD1:I:218540:219136:1 // ensembl // 11 // --- /// GENSCAN00000020398 // cdna:Genscan chromosome:SGD1:I:218540:219136:1 // ensembl // 11 // --- /// GENSCAN00000016734 // cdna:Genscan chromosome:SGD1:VIII:539150:539746:1 // ensembl // 11 // --- /// GENEFINDER00000020303 // cdna:GeneFinder chromosome:SGD1:VIII:539150:539746:1 // ensembl // 11 // --- /// YAR062W // cdna:pseudogene chromosome:SGD1:I:218540:219136:1 gene:YAR062W // ensembl // 11 // --- /// YHR213W // cdna:known chromosome:SGD1:VIII:539150:539746:1 gene:YHR213W // ensembl // 11 // --- --- No cerevisiae_gene 1.1968666405617 -4.65060738569013 -3.66555527744096 1.18345710691306 -1.56393919818535 Max fold change at or above threshold 2 4.65060738569013 Max fold change at or above threshold 0.562540404451001 -1.2733475144563 0.991607542325513 -0.280800432320212 2.65568853914738 1.49511233985859 0.56298482213528 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777361_at SPAC23C11.17.S1 --- 4.64970415923325 --- --- --- --- 0.729079127311707 3.39000225067139 2.46217966079712 0.408819437026978 0.780517995357513 0.633789002895355 0.533936023712158 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C11.17 /DEF=conserved eukaryotic protein --- --- --- --- --- --- D89117 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0432. // gb // 10 // --- /// SPAC23C11.17 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.61575919655446 4.64970415923325 -3.40348703942223 3.37710897015497 -1.78337686831557 Max fold change at or above threshold 1 4.64970415923325 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776111_at SPAP27G11.08c.S1 --- 4.64968263819276 --- --- --- --- 1.11273515224457 5.17386531829834 4.76920890808105 3.59782934188843 0.932372987270355 0.5 0.753906011581421 0.423828125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP27G11.08c /DEF=sequence orphan --- --- --- --- --- --- SPAP27G11.08c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.22415900252538 4.64968263819276 -2.26462333859298 4.28602340679252 3.23332046680742 Max fold change at or above threshold 3 4.64968263819276 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775029_at SPAC30D11.09.S1 --- 4.64865170524585 --- --- --- --- 12.8968324661255 7.23770666122437 9.75147342681885 7.79132032394409 0.030273400247097 0.303710997104645 0.030273400247097 0.0805663987994194 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30D11.09 /GEN=cwf19 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC30D11.09 // |cwf19||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.77174084856757 -1.7818948832535 -4.64865170524585 -1.32255218279693 -1.65528202280315 Max fold change at or above threshold 4 4.64865170524585 Max fold change at or above threshold PPAAPA No 4 0 PAPA 2 2 0 No No 1 < x = 2
1770493_at SPBC3H7.04.S1 --- 4.64865129791479 --- --- --- --- 0.468213051557541 0.300812244415283 0.442742019891739 2.17655920982361 0.962401986122131 0.943848013877869 0.953857004642487 0.525390625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3H7.04 /DEF=superoxide dismutase (predicted) --- --- --- --- --- --- SPBC3H7.04 // |||mitochondrial ribosomal subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.82482502444365 -1.5564959879464 1.62589733074239 -1.05753018805857 4.64865129791479 Max fold change at or above threshold 0 4.64865129791479 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774223_at YMR290C.S1 ATP-dependent RNA helicase; localizes to both the nuclear periphery and nucleolus; highly enriched in nuclear pore complex fractions; constituent of 66S pre-ribosomal particles 4.64546657773299 159.021156311035 287.444396972656 HAS1 6364 // rRNA processing // inferred from mutant phenotype 5635 // nuclear membrane // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay 3723 // RNA binding // inferred from direct assay /// 4004 // ATP-dependent RNA helicase activity // inferred from direct assay /// 8186 // RNA-dependent ATPase activity // inferred from direct assay 291.906127929688 146.844390869141 171.19792175293 282.982666015625 0.000244141003349796 0.0239257998764515 0.0375977009534836 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR290C /GEN=HAS1 /DB_XREF=GI:6323947 /SEG=NC_001145:-850073,851590 /DEF=Putative ATP-dependent RNA helicase; localizes to both the nuclear periphery and nucleolus; highly enriched in nuclear pore complex fractions /NOTE=Has1p; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 10684247]; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 10684247]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004903 // HAS1 SGDID:S0004903, Chr XIII from 851590-850073, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018958 // cdna:Genscan chromosome:SGD1:XIII:850073:851590:-1 // ensembl // 11 // --- /// GENEFINDER00000021959 // cdna:GeneFinder chromosome:SGD1:XIII:850073:851590:-1 // ensembl // 11 // --- /// YMR290C // cdna:known chromosome:SGD1:XIII:850073:851590:-1 gene:YMR290C // ensembl // 11 // --- --- No cerevisiae_gene 4.64546657773299 -1.98786025262495 -1.5081432685493 -1.70507985693286 -1.03153359899991 Max fold change at or above threshold 4 4.64546657773299 Max fold change at or above threshold 0.916898225790313 -1.01990618009026 -0.694747893210075 0.797755847510022 223.232776641846 74.8974633783912 0.335512842267588 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1771352_at SPAC2F7.08c.S1 --- 4.64277539147309 --- --- --- --- 5.65541982650757 1.21811187267303 4.07049751281738 3.16947245597839 0.219482004642487 0.432372987270355 0.432372987270355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F7.08c /DEF=chromatin remodeling complex (predicted) --- --- --- --- --- --- SPAC2F7.08c // |||chromatin remodeling complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.51714374251879 -4.64277539147309 -1.66801891202684 -1.389368205901 -1.78434105519361 Max fold change at or above threshold 3 4.64277539147309 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772111_at SPCC320.06.S1 --- 4.64136086771722 --- --- --- --- 1.37269115447998 2.69013643264771 4.20897912979126 2.49980020523071 0.753906011581421 0.601073980331421 0.219482004642487 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC320.06 /DEF=sequence orphan --- --- --- --- --- --- SPCC320.06 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.64136086771722 1.95975360070475 -3.07956526259451 3.06622441330276 1.82109442249427 Max fold change at or above threshold 2 4.64136086771722 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771165_x_at YEL069C.S1 Protein of unknown function with similarity to hexose transporter family members, expression is repressed by high levels of glucose /// Protein of unknown function with similarity to hexose transporter family members, expression is induced by low levels of glucose and repressed by high levels of glucose 4.63808552004561 84.296314239502 75.5223388671875 HXT17 /// HXT13 8645 // hexose transport // inferred from genetic interaction 5886 // plasma membrane // inferred from sequence similarity 5353 // fructose transporter activity // inferred from genetic interaction /// 5355 // glucose transporter activity // inferred from genetic interaction /// 15578 // mannose transporter activity // inferred from genetic interaction 80.1507034301758 81.9078063964844 86.6848220825195 70.8939743041992 0.0461426004767418 0.0375977009534836 0.0461426004767418 0.018554700538516 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL069C /GEN=HXT13 /DB_XREF=GI:6320766 /SEG=NC_001137:-21537,23231 /DEF=Protein of unknown function with similarity to hexose transporter family members, expression is induced by low levels of glucose and repressed by high levels of glucose /NOTE=Hxt13p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 8929273]; go_function: fructose transporter activity [goid GO:0005353] [evidence IGI] [pmid 10618490]; go_function: glucose transporter activity [goid GO:0005355] [evidence IGI] [pmid 10618490]; go_function: mannose transporter activity [goid GO:0015578] [evidence IGI] [pmid 10618490]; go_process: hexose transport [goid GO:0008645] [evidence IGI] [pmid 10618490] --- --- --- --- --- S0000795 // span:51-73,108-130,137-154,169-188,195-217,227-249,318-340,355-374,383-402,422-444,457-479,483-505 // numtm:12 /// S0005355 // span:51-73,108-130,137-154,169-188,195-217,227-249,318-340,355-374,383-402,422-444,457-479,483-505 // numtm:12 S0000795 // HXT13 SGDID:S0000795, Chr V from 23231-21537, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016749 // cdna:Genscan chromosome:SGD1:V:21537:22982:-1 // ensembl // 11 // --- /// GENEFINDER00000019605 // cdna:GeneFinder chromosome:SGD1:V:21537:22982:-1 // ensembl // 11 // --- /// YEL069C // cdna:known chromosome:SGD1:V:21537:23231:-1 gene:YEL069C // ensembl // 11 // --- --- No cerevisiae_gene -4.63808552004561 1.02192248964901 1.05953702594057 1.08152291087546 -1.13057145147847 Max fold change at or above threshold 4 4.63808552004561 Max fold change at or above threshold 0.0364946861061246 0.302157752317952 1.0244128841047 -1.36306532252877 79.9093265533447 6.61402802942717 0.0827691624332721 PAPPPP Called_P_>2EXP 4 0 PPPP 0 4 0 Yes Yes 3 < x
1774976_at YPR144C.S1 Nucleolar protein, forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits 4.63718826324596 358.71630859375 338.388641357422 NOC4 7046 // ribosome biogenesis // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 30692 // Noc4p-Nop14p complex // inferred from physical interaction 30515 // snoRNA binding // RCA 300.216888427734 302.248626708984 415.183990478516 376.560394287109 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR144C /GEN=NOC4 /DB_XREF=GI:6325402 /SEG=NC_001148:-819759,821417 /DEF=Nucleolar protein, forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits /NOTE=Noc4p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10684247]; go_function: snoRNA binding [goid GO:0030515] [evidence TAS] [pmid 14566057]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP] [pmid 12837249]; go_process: ribosome biogenesis [goid GO:0007046] [evidence IMP] [pmid 12446671] --- --- --- --- scop // a.4.5.TnsA endonuclease, C-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; TnsA endonuclease, C-terminal domain // 0.790000021457672 --- S0006348 // NOC4 SGDID:S0006348, Chr XVI from 821419-819761, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017294 // cdna:Genscan chromosome:SGD1:XVI:819761:821419:-1 // ensembl // 11 // --- /// YPR144C // cdna:known chromosome:SGD1:XVI:819761:821419:-1 gene:YPR144C // ensembl // 11 // --- --- No cerevisiae_gene 4.63718826324596 1.00676756824671 -1.57319652436958 1.38294681772526 1.2542945077447 Max fold change at or above threshold 4 4.63718826324596 Max fold change at or above threshold -0.849844170659258 -0.814121816635144 1.17152617929437 0.492439808000034 348.552474975586 56.8758229056931 0.163177217174191 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780242_at SPAC9G1.09.S1 --- 4.63706801735961 --- --- --- --- 1.63954889774323 7.60269975662231 1.49936199188232 0.91361790895462 0.665526986122131 0.129638999700546 0.432372987270355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9G1.09 /GEN=sid1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPAC9G1.09 // |sid1||PAK-related kinase Sid1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.14985640344449 4.63706801735961 2.66955756022834 -1.0934977054373 -1.7945673806014 Max fold change at or above threshold 1 4.63706801735961 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770158_at SPBC14C8.05c.S1 --- 4.6366044755717 --- --- --- --- 13.8488731384277 7.54637050628662 8.44002723693848 4.83722019195557 0.0805663987994194 0.303710997104645 0.018554700538516 0.030273400247097 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14C8.05c /GEN=meu17 /DEF=glucoamylase --- --- --- --- --- --- AB054301 // Schizosaccharomyces pombe mRNA for Meu17, partial cds. // gb // 11 // --- /// SPBC14C8.05c // |meu17||glucoamylase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.53628798877279 -1.83517004987904 -4.6366044755717 -1.64085645100966 -2.86298175168019 Max fold change at or above threshold 4 4.6366044755717 Max fold change at or above threshold AAAAPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1770688_at SPAC23D3.06c.S1 --- 4.63592276030486 --- --- --- --- 0.581096649169922 0.285340130329132 2.69391918182373 0.335275202989578 0.919434010982513 0.99975597858429 0.696289002895355 0.981445014476776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23D3.06c /GEN=nup146 /DEF=nucleoporin --- --- --- --- --- --- SPAC23D3.06c // |nup146||nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.7918804281466 -2.03650516490492 -1.33382878388961 4.63592276030486 -1.73319304257638 Max fold change at or above threshold 1 4.63592276030486 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772630_at SPBC83.04.S1 --- 4.63582823849473 --- --- --- --- 1.37678027153015 2.13022947311401 1.32462394237518 0.908213376998901 0.753906011581421 0.805419981479645 0.696289002895355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC83.04 /GEN=apc15 /DEF=anaphase-promoting complex (APC) (PMID 12477395) --- --- --- --- --- --- SPBC83.04 // |apc15||anaphase-promoting complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.04745934693901 1.54725450179968 4.63582823849473 -1.03937444242586 -1.5159215955171 Max fold change at or above threshold 0 4.63582823849473 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776660_at SPCC63.12c.S1 --- 4.63468340080153 --- --- --- --- 7.43506908416748 6.39409303665161 6.82957458496094 6.22679996490479 0.0952147990465164 0.129638999700546 0.0107421996071935 0.0107421996071935 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC63.12c /DEF=20S proteasome component (beta 3) --- --- --- --- --- --- SPCC63.12c // |||20S proteasome component |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.17364155198126 -1.16280276835962 -4.63468340080153 -1.08865771823327 -1.19404334908343 Max fold change at or above threshold 4 4.63468340080153 Max fold change at or above threshold AAAAPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1770389_at SPAC1F12.08.S1 --- 4.63434511615915 --- --- --- --- 1.3334276676178 0.7376948595047 1.56967055797577 0.471192479133606 0.567627012729645 0.870360970497131 0.601073980331421 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F12.08 /DEF=cytidylyltransferase (predicted) --- --- --- --- --- --- SPAC1F12.08 // |||cytidylyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.63434511615915 -1.80755992865815 -3.22307871013195 1.17716963289057 -2.82990015050666 Max fold change at or above threshold 0 4.63434511615915 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775229_at SPAC18G6.09c.S1 --- 4.633763895825 --- --- --- --- 5.14075088500977 23.8210258483887 17.1677284240723 12.138840675354 0.111571997404099 0.00585938012227416 0.00292969006113708 0.0239257998764515 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18G6.09c /DEF=serine-rich protein --- --- --- --- --- --- SPAC18G6.09c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.11097477992634 4.633763895825 2.26206277451234 3.33953712367832 2.36129720091094 Max fold change at or above threshold 4 4.633763895825 Max fold change at or above threshold APPPPP No 3 0 APPP 1 3 0 No No 2 < x = 3
1775868_s_at YNR072W.S1 Protein of unknown function with similarity to hexose transporter family members, expression is repressed by high levels of glucose /// Protein of unknown function with similarity to hexose transporter family members, expression is induced by low levels of glucose and repressed by high levels of glucose 4.6300773469507 509.226379394531 1356.41027832031 HXT17 /// HXT13 8645 // hexose transport // inferred from genetic interaction 5886 // plasma membrane // inferred from sequence similarity 5353 // fructose transporter activity // inferred from genetic interaction /// 5355 // glucose transporter activity // inferred from genetic interaction /// 15578 // mannose transporter activity // inferred from genetic interaction 1421.92150878906 596.270080566406 422.182678222656 1290.89904785156 0.00195312988944352 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR072W /GEN=HXT17 /DB_XREF=GI:6324400 /SEG=NC_001146:+772654,774348 /DEF=Protein of unknown function with similarity to hexose transporter family members, expression is repressed by high levels of glucose /NOTE=Hxt17p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 8929273]; go_function: fructose transporter activity [goid GO:0005353] [evidence IGI] [pmid 10618490]; go_function: glucose transporter activity [goid GO:0005355] [evidence IGI] [pmid 10618490]; go_function: mannose transporter activity [goid GO:0015578] [evidence IGI] [pmid 10618490]; go_process: hexose transport [goid GO:0008645] [evidence IGI] [pmid 10618490] --- --- --- --- --- S0000795 // span:51-73,108-130,137-154,169-188,195-217,227-249,318-340,355-374,383-402,422-444,457-479,483-505 // numtm:12 /// S0005355 // span:51-73,108-130,137-154,169-188,195-217,227-249,318-340,355-374,383-402,422-444,457-479,483-505 // numtm:12 S0000795 // HXT13 SGDID:S0000795, Chr V from 23231-21537, reverse complement, Verified ORF // sgd // 11 // --- /// S0005355 // HXT17 SGDID:S0005355, Chr XIV from 772655-774349, Verified ORF // sgd // 11 // --- /// GENSCAN00000016749 // cdna:Genscan chromosome:SGD1:V:21537:22982:-1 // ensembl // 11 // --- /// GENEFINDER00000019605 // cdna:GeneFinder chromosome:SGD1:V:21537:22982:-1 // ensembl // 11 // --- /// GENSCAN00000020098 // cdna:Genscan chromosome:SGD1:XIV:772655:774349:1 // ensembl // 11 // --- /// GENEFINDER00000020496 // cdna:GeneFinder chromosome:SGD1:XIV:772655:774349:1 // ensembl // 11 // --- /// YEL069C // cdna:known chromosome:SGD1:V:21537:23231:-1 gene:YEL069C // ensembl // 11 // --- /// YNR072W // cdna:known chromosome:SGD1:XIV:772655:774349:1 gene:YNR072W // ensembl // 11 // --- --- No cerevisiae_gene -4.6300773469507 -2.38469370698318 1.49122320088946 -3.36802427511995 -1.10149706218744 Max fold change at or above threshold 4 4.6300773469507 Max fold change at or above threshold 0.98382548098628 -0.676962971895368 -1.02713780079022 0.720275291699312 932.818328857422 497.144249040305 0.532948628538678 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777934_at SPBC776.15c.S1 --- 4.62998039510351 --- --- --- --- 0.694889545440674 0.601980626583099 3.21732497215271 1.2229665517807 0.780517995357513 0.904784977436066 0.334473013877869 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC776.15c /DEF=dihydrolipoamide S-succinyltransferase (e2 component of oxoglutarate dehydrogenase complex) (predicted) --- --- --- --- --- --- SPBC776.15c // |||dihydrolipoamide S-succinyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.40868283504507 -1.15433871914605 1.83249290291768 4.62998039510351 1.75994380661626 Max fold change at or above threshold 1 4.62998039510351 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773167_at SPCC1393.13.S1 --- 4.62972502979429 --- --- --- --- 2.68689036369324 1.77636647224426 4.81544828414917 0.580356359481812 0.398925989866257 0.665526986122131 0.274170011281967 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1393.13 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC1393.13 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.10881381695148 -1.51257660267513 1.58641570911569 1.79220125585256 -4.62972502979429 Max fold change at or above threshold 2 4.62972502979429 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770095_at YER186C.S1 Hypothetical protein 4.62843784562587 328.108963012695 117.679656982422 --- --- --- --- 100.271789550781 192.116180419922 464.101745605469 135.087524414063 0.0239257998764515 0.00585938012227416 0.00195312988944352 0.00585938012227416 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER186C /GEN=FAU1 /DB_XREF=GI:6321034 /SEG=NC_001137:-561700,562620 /DEF=Hypothetical ORF /NOTE=Yer186cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000988 // YER186C SGDID:S0000988, Chr V from 562620-561700, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016962 // cdna:Genscan chromosome:SGD1:V:561700:562620:-1 // ensembl // 11 // --- /// YER186C // cdna:known chromosome:SGD1:V:561700:562620:-1 gene:YER186C // ensembl // 11 // --- --- No cerevisiae_gene 1.5337584981736 1.91595444023294 2.50680447368085 4.62843784562587 1.34721365819096 Max fold change at or above threshold 4 4.62843784562587 Max fold change at or above threshold -0.74226020833752 -0.186306567417618 1.46007993274446 -0.531513156989317 222.894309997559 165.201527805756 0.741165298511056 PPPPPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1769930_at SPBP19A11.04c.S1 --- 4.6281578259611 --- --- --- --- 1.01717591285706 4.70765066146851 0.563091576099396 3.97642636299133 0.780517995357513 0.533936023712158 0.981445014476776 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP19A11.04c /GEN=mor2 /DEF=involved in cellular morphogenesis (required) (PMID 12234926) --- --- --- --- --- --- SPBP19A11.04c // |mor2|cps12|HEAT repeat |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.41566750930832 4.6281578259611 -2.02550284525479 -1.80641294601343 3.90928089500497 Max fold change at or above threshold 2 4.6281578259611 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771379_at SPAC1F8.07c.S1 --- 4.6262178047396 --- --- --- --- 3.44614624977112 15.9426231384277 10.9461679458618 1.85617303848267 0.533936023712158 0.366210997104645 0.466064006090164 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F8.07c /DEF=pyruvate decarboxylase (predicted) --- --- --- --- --- --- D89264 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1752. // gb // 9 // --- /// SPAC1F8.07c // |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.80946991372266 4.6262178047396 -1.19488593052638 3.17635037880033 -1.85658673966527 Max fold change at or above threshold 3 4.6262178047396 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772117_at SPBC428.11.S1 --- 4.62551796574712 --- --- --- --- 3.16825842857361 0.684952139854431 1.57921552658081 5.21433448791504 0.533936023712158 0.828612983226776 0.805419981479645 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC428.11 /DEF=homocysteine synthase (PMID 11754480) --- --- --- --- --- --- AF012876 // Schizosaccharomyces pombe homocysteine synthase mRNA, complete cds. // gb // 11 // --- /// SPBC428.11 // |||homocysteine synthase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.60723100645583 -4.62551796574712 -3.18698096459217 -2.00622294756262 1.64580466065787 Max fold change at or above threshold 2 4.62551796574712 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778137_s_at SPBCPT2R1.05c.S1 --- 4.62523568145677 --- --- --- --- 3.20639777183533 2.19057250022888 1.50848686695099 0.693239867687225 0.696289002895355 0.780517995357513 0.870360970497131 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBCPT2R1.05c /DEF=pseudogene --- --- --- --- --- --- SPBCPT2R1.05c // |||pseudogene|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPAC212.05c // |||pseudogene|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.16371755203656 -1.46372593077851 -1.28220217245661 -2.12557221549845 -4.62523568145677 Max fold change at or above threshold 1 4.62523568145677 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777471_at SPCC965.05c.S1 --- 4.62514968094528 --- --- --- --- 5.17403984069824 10.7333030700684 10.3532762527466 4.86193513870239 0.366210997104645 0.194580003619194 0.334473013877869 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC965.05c /GEN=thp1 /DEF=uracil DNA N-glycosylase activity (IDA) (PMID 12711670) --- --- --- --- --- --- SPCC965.05c // |thp1||uracil DNA N-glycosylase activity |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.02905901049402 2.07445311604324 -4.62514968094528 2.00100435472283 -1.06419351412391 Max fold change at or above threshold 4 4.62514968094528 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776871_at SPBC32H8.09.S1 --- 4.62334177470906 --- --- --- --- 1.65227651596069 2.33638763427734 0.799861967563629 7.02715921401978 0.466064006090164 0.567627012729645 0.665526986122131 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32H8.09 /DEF=WD repeat protein --- --- --- --- --- --- SPBC32H8.09 // |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.62334177470906 1.41404154311234 -1.47368085293015 -2.06570206231146 4.25301645707524 Max fold change at or above threshold 1 4.62334177470906 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769473_at SPAC4A8.09c.S1 --- 4.62298163838337 --- --- --- --- 1.83879721164703 5.99992609024048 3.51457095146179 8.50072574615479 0.559326171875 0.567627012729645 0.98046875 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4A8.09c /GEN=cwf21 /DEF=involved in mRNA splicing (PMID 11884590) --- --- --- --- --- --- SPAC4A8.09c // |cwf21||complexed with Cdc5p |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.69886558457989 3.26296236052385 -1.90338085981026 1.91134233247708 4.62298163838337 Max fold change at or above threshold 3 4.62298163838337 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771539_at YNL242W.S1 Peripheral membrane protein required for the formation of cytosolic sequestering vesicles involved in vacuolar import through both the Cvt pathway and autophagy; interacts with Atg9p and is necessary for its trafficking 4.62227227561251 234.565307617188 798.997711181641 ATG2 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6623 // protein-vacuolar targeting // inferred from expression pattern /// 6914 // autophagy // inferred from mutant phenotype /// 30242 // peroxisome degradation // inferred from mutant phenotype /// 30242 // peroxisome degradation // inferred from expression pattern /// 30242 // peroxisome degradation // inferred from direct assay 19898 // extrinsic to membrane // inferred from direct assay --- 760.914489746094 164.619140625 304.511474609375 837.080932617188 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL242W /GEN=ATG2 /DB_XREF=GI:6324087 /SEG=NC_001146:+191323,196101 /DEF=Defective in autophagy; required for sporulation /NOTE=Atg2p; go_component: extrinsic to membrane [goid GO:0019898] [evidence IDA] [pmid 11382760]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: autophagy [goid GO:0006914] [evidence IMP] [pmid 11382760]; go_process: peroxisome degradation [goid GO:0030242] [evidence IDA,IEP,IMP] [pmid 11382760]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IEP,IMP] [pmid 11382760] --- --- --- --- --- --- S0005186 // ATG2 SGDID:S0005186, Chr XIV from 191323-196101, Verified ORF // sgd // 11 // --- /// GENSCAN00000019846 // cdna:Genscan chromosome:SGD1:XIV:191323:196101:1 // ensembl // 11 // --- /// GENEFINDER00000020547 // cdna:GeneFinder chromosome:SGD1:XIV:192085:196101:1 // ensembl // 11 // --- /// YNL242W // cdna:known chromosome:SGD1:XIV:191323:196101:1 gene:YNL242W // ensembl // 11 // --- --- No cerevisiae_gene -4.33702506366084 -4.62227227561251 1.43400672328467 -2.49880399653967 1.10009855758761 Max fold change at or above threshold 4 4.62227227561251 Max fold change at or above threshold 0.734676810296316 -1.05977293780701 -0.638790678177025 0.963886805687718 516.781509399414 332.299831606518 0.643018036757364 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777488_at SPBC17D1.02.S1 --- 4.62104269434625 --- --- --- --- 4.82810306549072 1.42966401576996 2.40457892417908 1.04480814933777 0.334473013877869 0.805419981479645 0.5 0.525390625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17D1.02 /DEF=involved in peptidyl-diphthamide biosynthesis from peptidyl-histidine (predicted) --- --- --- --- --- --- SPBC17D1.02 // |||diphthamide biosynthesis protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.1717152476941 -3.37708931065912 -1.67122634007993 -2.00787880861055 -4.62104269434625 Max fold change at or above threshold 1 4.62104269434625 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778974_at SPAC23C11.12.S1 --- 4.6208551047062 --- --- --- --- 1.46369409561157 6.76351833343506 0.671599507331848 0.502506971359253 0.466064006090164 0.366210997104645 0.904784977436066 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C11.12 /GEN=hcn1 /DEF=anaphase-promoting complex (APC) --- --- --- --- --- --- SPAC23C11.12 // |hcn1||anaphase-promoting complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.5415322610303 4.6208551047062 1.03015509568219 -2.1794150824002 -2.91278366079651 Max fold change at or above threshold 1 4.6208551047062 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777423_at SPBC1709.02c.S1 --- 4.62031858959325 --- --- --- --- 3.23390102386475 8.2044038772583 7.65415954589844 2.58453464508057 0.665526986122131 0.366210997104645 0.149657994508743 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1709.02c /DEF=valine-tRNA ligase (predicted) --- --- --- --- --- --- SPBC1709.02c // ||SPBC1734.18c|valine-tRNA ligase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.17709106043655 2.53699906605473 -4.62031858959325 2.36685028064067 -1.25125079287298 Max fold change at or above threshold 4 4.62031858959325 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771764_at YOR101W.S1 GTPase involved in G-protein signaling in the adenylate cyclase activating pathway, plays a role in cell proliferation; localized to the plasma membrane; homolog of mammalian RAS proto-oncogenes 4.61811997361043 58.8007068634033 69.6502914428711 RAS1 7189 // G-protein signaling, adenylate cyclase activating pathway // inferred from direct assay /// 7265 // Ras protein signal transduction // traceable author statement /// 8283 // cell proliferation // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay 3924 // GTPase activity // inferred from mutant phenotype 49.9691543579102 47.1169853210449 70.4844284057617 89.331428527832 0.030273400247097 0.018554700538516 0.018554700538516 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR101W /GEN=RAS1 /DB_XREF=GI:6324675 /SEG=NC_001147:+515244,516173 /DEF=ras proto-oncogene homolog /NOTE=Ras1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 3513173]; go_function: GTPase activity [goid GO:0003924] [evidence IMP] [pmid 6327067]; go_process: G-protein signaling, adenylate cyclase activating pathway [goid GO:0007189] [evidence IDA] [pmid 3891097]; go_process: RAS protein signal transduction [goid GO:0007265] [evidence TAS] [pmid 3891097]; go_process: cell proliferation [goid GO:0008283] [evidence IMP] [pmid 6327067] --- --- --- --- --- --- S0005627 // RAS1 SGDID:S0005627, Chr XV from 515244-516173, Verified ORF // sgd // 10 // --- /// GENSCAN00000017537 // cdna:Genscan chromosome:SGD1:XV:515244:516173:1 // ensembl // 10 // --- /// GENEFINDER00000022607 // cdna:GeneFinder chromosome:SGD1:XV:515244:516173:1 // ensembl // 10 // --- /// YOR101W // cdna:known chromosome:SGD1:XV:515244:516173:1 gene:YOR101W // ensembl // 10 // --- --- No cerevisiae_gene 4.61811997361043 -1.06053377603493 1.8638950695444 1.41055875992834 1.78773144504277 Max fold change at or above threshold 4 4.61811997361043 Max fold change at or above threshold -0.723313171542197 -0.868021472404851 0.317554466674357 1.27378017727269 64.2254991531372 19.7097818152968 0.306884058126219 PPPPPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1776038_at SPBP8B7.05c.S1 --- 4.60982958600236 --- --- --- --- 2.04003572463989 6.35220861434937 6.85787439346313 1.09686994552612 0.696289002895355 0.567627012729645 0.398925989866257 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.05c /DEF=carbonic anhydrase family --- --- --- --- --- --- SPBP8B7.05c // |||carbonic anhydrase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.60982958600236 3.1137732234913 -2.42927802800041 3.36164426467271 -1.85987019970847 Max fold change at or above threshold 2 4.60982958600236 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775591_at SPAC9E9.05.S1 --- 4.60873247482456 --- --- --- --- 1.32845604419708 2.98981356620789 5.20422983169556 3.59515762329102 0.665526986122131 0.366210997104645 0.398925989866257 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9E9.05 /DEF=adaptor (predicted) --- --- --- --- --- --- SPAC9E9.05 // |||synaptojanin binding protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.61355998467592 2.2505927684005 4.60873247482456 3.91750246794277 2.70626765484283 Max fold change at or above threshold 3 4.60873247482456 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777270_at SPBC26H8.13c.S1 --- 4.60846827705295 --- --- --- --- 0.994704782962799 0.497606307268143 4.58406543731689 1.15495467185974 0.753906011581421 0.932372987270355 0.432372987270355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC26H8.13c /DEF=sequence orphan --- --- --- --- --- --- SPBC26H8.13c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.32096238737977 -1.99897945109202 -1.64301751544306 4.60846827705295 1.16110296405696 Max fold change at or above threshold 1 4.60846827705295 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775674_at SPAC1F5.08c.S1 --- 4.60814078050507 --- --- --- --- 2.46940732002258 0.614322781562805 0.816038727760315 0.53587931394577 0.932372987270355 0.981445014476776 0.981445014476776 0.991943001747131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F5.08c /GEN=yam8 /DEF=involved in calcium ion transport (PMID 10694511) --- --- --- --- --- --- SPAC1F5.08c // |yam8|ehs1|glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.32388637939335 -4.01972284625444 -1.81211737789116 -3.02609084105613 -4.60814078050507 Max fold change at or above threshold 0 4.60814078050507 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776649_at SPAC1783.05.S1 --- 4.60655488136404 --- --- --- --- 9.8980770111084 7.59836006164551 9.25963401794434 3.61144328117371 0.533936023712158 0.366210997104645 0.366210997104645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1783.05 /GEN=hrp1 /DEF=ATPase --- --- --- --- --- --- SPAC1783.05 // |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.60655488136404 -1.30265964376593 1.20968724389111 -1.06894905262204 -2.7407538317732 Max fold change at or above threshold 4 4.60655488136404 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769665_at YKL108W.S1 Protein required for DNA replication, phosphorylated in S phase by S-phase cyclin-dependent kinases (Cdks), phosphorylation is essential for DNA replication and for complex formation with Dpb11p; potential Cdc28p substrate 4.60529020214667 29.409143447876 129.318840026855 SLD2 6271 // DNA strand elongation // inferred from physical interaction /// 6271 // DNA strand elongation // inferred from genetic interaction 5657 // replication fork // inferred from genetic interaction /// 5657 // replication fork // inferred from physical interaction --- 127.029846191406 27.5834617614746 31.2348251342773 131.607833862305 0.000244141003349796 0.00122069998178631 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL108W /GEN=SLD2 /DB_XREF=GI:6322741 /SEG=NC_001143:+234072,235433 /DEF=Protein required for DNA replication, phosphorylated in S phase by S-phase cyclin-dependent kinases (Cdks), phosphorylation is essential for DNA replication and for complex formation with Dpb11p; potential Cdc28p substrate /NOTE=Sld2p; go_component: replication fork [goid GO:0005657] [evidence IGI,IPI] [pmid 9742127]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA strand elongation [goid GO:0006271] [evidence IGI,IPI] [pmid 9742127] --- --- --- --- --- --- S0001591 // SLD2 SGDID:S0001591, Chr XI from 234072-235433, Verified ORF // sgd // 11 // --- /// GENSCAN00000018335 // cdna:Genscan chromosome:SGD1:XI:234072:235433:1 // ensembl // 11 // --- /// GENEFINDER00000023004 // cdna:GeneFinder chromosome:SGD1:XI:234195:235433:1 // ensembl // 11 // --- /// YKL108W // cdna:known chromosome:SGD1:XI:234072:235433:1 gene:YKL108W // ensembl // 11 // --- --- No cerevisiae_gene -1.251058587365 -4.60529020214667 -1.01987562459515 -4.06692996183938 1.03603867758763 Max fold change at or above threshold 4 4.60529020214667 Max fold change at or above threshold 0.82563427344362 -0.8969057774133 -0.833659439339378 0.904930943309058 79.3639917373657 57.7324076618477 0.727438305433249 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769892_at YJR135C.S1 Protein involved in minichromosome maintenance; component of the kinetochore; binds to centromeric DNA in a Ctf19p-dependent manner 4.60499705487996 113.418117523193 39.2793169021606 MCM22 7059 // chromosome segregation // inferred from physical interaction 778 // condensed nuclear chromosome kinetochore // inferred from direct assay 5515 // protein binding // inferred from direct assay 27.4562816619873 100.40013885498 126.436096191406 51.102352142334 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR135C /GEN=MCM22 /DB_XREF=GI:6322595 /SEG=NC_001142:-675974,676693 /DEF=Required for maintenance of chromosomes and minichromosomes /NOTE=Mcm22p; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IDA] [pmid 11782448]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 11782448]; go_process: chromosome segregation [goid GO:0007059] [evidence IPI] [pmid 11782448] --- --- --- --- --- --- S0003896 // MCM22 SGDID:S0003896, Chr X from 676693-675974, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024240 // cdna:Genscan chromosome:SGD1:X:675974:676693:-1 // ensembl // 11 // --- /// YJR135C // cdna:known chromosome:SGD1:X:675974:676693:-1 gene:YJR135C // ensembl // 11 // --- --- No cerevisiae_gene 3.98353622671318 3.65672745097099 4.22164280803354 4.60499705487996 1.86122624947734 Max fold change at or above threshold 4 4.60499705487996 Max fold change at or above threshold -1.08293337496265 0.532722228262609 1.10940053915361 -0.559189392453574 76.348717212677 45.1481473201212 0.591341268961422 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771400_at SPBP8B7.02.S1 --- 4.6020592254985 --- --- --- --- 5.69925260543823 1.2384135723114 2.6800274848938 3.48544073104858 0.0561522990465164 0.665526986122131 0.432372987270355 0.366210997104645 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.02 /DEF=sequence orphan --- --- --- --- --- --- SPBP8B7.02 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.04604636589834 -4.6020592254985 1.23374468581054 -2.12656498396474 -1.63515981054242 Max fold change at or above threshold 3 4.6020592254985 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1773591_at YMR199W.S1 G1 cyclin involved in regulation of the cell cycle; activates Cdc28p kinase to promote the G1 to S phase transition; late G1 specific expression depends on transcription factor complexes, MBF (Swi6p-Mbp1p) and SBF (Swi6p-Swi4p) 4.60054210965539 89.8723220825195 462.530715942383 CLN1 79 // regulation of cyclin dependent protein kinase activity // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 16538 // cyclin-dependent protein kinase regulator activity // traceable author statement 402.253021240234 87.4360046386719 92.3086395263672 522.808410644531 0.000244141003349796 0.000244140625 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR199W /GEN=CLN1 /DB_XREF=GI:6323855 /SEG=NC_001145:+662643,664283 /DEF=role in cell cycle START /NOTE=Cln1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11080155]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11080155]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS]; go_process: regulation of cyclin dependent protein kinase activity [goid GO:0000079] [evidence TAS] --- --- --- --- --- --- S0004812 // CLN1 SGDID:S0004812, Chr XIII from 662643-664283, Verified ORF // sgd // 11 // --- /// GENSCAN00000018881 // cdna:Genscan chromosome:SGD1:XIII:662643:664283:1 // ensembl // 11 // --- /// GENEFINDER00000021954 // cdna:GeneFinder chromosome:SGD1:XIII:662895:664283:1 // ensembl // 11 // --- /// YMR199W // cdna:known chromosome:SGD1:XIII:662643:664283:1 gene:YMR199W // ensembl // 11 // --- --- No cerevisiae_gene 1.13104737589871 -4.60054210965539 -1.70936830080826 -4.35769634677948 1.29970039512096 Max fold change at or above threshold 4 4.60054210965539 Max fold change at or above threshold 0.571090399200957 -0.855223230614817 -0.833147214431005 1.11728004584487 276.201519012451 220.720751748145 0.799129391240584 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779267_at YER096W.S1 Sporulation-specific activator of Chs3p (chitin synthase III), required for the synthesis of the chitosan layer of ascospores; has similarity to Skt5p, which activates Chs3p during vegetative growth; transcriptionally induced at alkaline pH 4.59899197859329 69.0950603485107 251.479019165039 SHC1 6031 // chitin biosynthesis // inferred from genetic interaction /// 30437 // sporulation (sensu Fungi) // inferred from direct assay 5628 // prospore membrane // inferred from direct assay 8047 // enzyme activator activity // inferred from genetic interaction 244.093292236328 53.0753898620605 85.1147308349609 258.86474609375 0.000732421991415322 0.00415039015933871 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER096W /GEN=SHC1 /DB_XREF=GI:6320943 /SEG=NC_001137:+351694,353232 /DEF=Sporulation-specific activator of Chs3p (chitin synthase III), required for the synthesis of the chitosan layer of ascospores; has similarity to Skt5p, which activates Chs3p during vegetative growth; transcriptionally induced at alkaline pH /NOTE=Shc1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: enzyme activator activity [goid GO:0008047] [evidence IGI] [pmid 11918806]; go_process: chitin biosynthesis [goid GO:0006031] [evidence IGI] [pmid 11918806]; go_process: sporulation (sensu Fungi) [goid GO:0030437] [evidence IDA] [pmid 11918806] --- --- --- --- --- --- S0000898 // SHC1 SGDID:S0000898, Chr V from 351694-353232, Verified ORF // sgd // 11 // --- /// GENSCAN00000016883 // cdna:Genscan chromosome:SGD1:V:351694:353232:1 // ensembl // 11 // --- /// GENEFINDER00000019773 // cdna:GeneFinder chromosome:SGD1:V:351694:353232:1 // ensembl // 11 // --- /// YER096W // cdna:known chromosome:SGD1:V:351694:353232:1 gene:YER096W // ensembl // 11 // --- --- No cerevisiae_gene -2.19634686300506 -4.59899197859329 2.24072867127114 -2.86781488752669 1.0605156074634 Max fold change at or above threshold 4 4.59899197859329 Max fold change at or above threshold 0.788542653989727 -1.00876672617263 -0.707304887522622 0.927528959705522 160.287039756775 106.279922912889 0.663059989592184 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778605_at SPAC637.09.S1 --- 4.59860196809923 --- --- --- --- 0.47322005033493 0.543293476104736 0.321392029523849 0.378210514783859 0.962401986122131 0.981445014476776 0.932372987270355 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC637.09 /DEF=ribonuclease H (predicted) --- --- --- --- --- --- SPAC637.09 // |||ribonuclease H |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.0649948382195 1.14807788833168 -4.59860196809923 -1.47240754861288 -1.25120807549565 Max fold change at or above threshold 0 4.59860196809923 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770475_at SPAC17G8.13c.S1 --- 4.59434888121734 --- --- --- --- 1.00818014144897 3.06317687034607 3.50823879241943 4.63193130493164 0.55908203125 0.303710997104645 0.398925989866257 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G8.13c /GEN=mst2 /DEF=transcription factor --- --- --- --- --- --- SPAC17G8.13c // |mst2||histone acetyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.4834357291049 3.03832295877562 -1.54168451608599 3.47977375092643 4.59434888121734 Max fold change at or above threshold 3 4.59434888121734 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772699_at YOL152W.S1 Putative ferric reductase with similarity to Fre2p; expression induced by low copper levels but not by low iron levels 4.59063029508093 1230.72326660156 306.620864868164 FRE7 --- --- 293 // ferric-chelate reductase activity // inferred from sequence similarity 293.950531005859 1112.0283203125 1349.41821289063 319.291198730469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL152W /GEN=FRE7 /DB_XREF=GI:6324420 /SEG=NC_001147:+40747,42636 /DEF=Putative ferric reductase with similarity to Fre2p; expression induced by low copper levels but not by low iron levels /NOTE=Fre7p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: ferric-chelate reductase activity [goid GO:0000293] [evidence ISS] [pmid 11120744]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005512 // span:46-68,83-105,112-134,166-188,195-217,237-259,266-288,294-313 // numtm:8 S0005512 // FRE7 SGDID:S0005512, Chr XV from 40747-42636, Verified ORF // sgd // 11 // --- /// GENSCAN00000017349 // cdna:Genscan chromosome:SGD1:XV:41626:42636:1 // ensembl // 11 // --- /// YOL152W // cdna:known chromosome:SGD1:XV:40747:42636:1 gene:YOL152W // ensembl // 11 // --- --- No cerevisiae_gene 1.72956179868484 3.78304579517951 1.31406035046512 4.59063029508093 1.08620725275745 Max fold change at or above threshold 4 4.59063029508093 Max fold change at or above threshold -0.875288520875967 0.63307805990797 1.07077602122802 -0.828565560260025 768.672065734863 542.360060033593 0.705580551460638 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776230_at SPBC19F5.04.S1 --- 4.58945992028014 --- --- --- --- 1.48076510429382 1.41963267326355 0.395496070384979 0.339165449142456 0.753906011581421 0.828612983226776 0.904784977436066 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19F5.04 /DEF=aspartate kinase (predicted) --- --- --- --- --- --- SPBC19F5.04 // |||aspartate kinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.64526109832878 -1.04306214711848 -4.58945992028014 -3.74407033387825 -4.3659078719185 Max fold change at or above threshold 0 4.58945992028014 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778550_at YJR147W.S1 Protein with similarity to heat shock transcription factors; overexpression suppresses the pseudohyphal filamentation defect of a diploid mep1 mep2 homozygous null mutant 4.58893854758931 32.8520059585571 37.0344047546387 HMS2 7124 // pseudohyphal growth // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 41.2685012817383 25.1587314605713 40.545280456543 32.8003082275391 0.00122069998178631 0.0107421996071935 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR147W /GEN=HMS2 /DB_XREF=GI:6322607 /SEG=NC_001142:+704111,705187 /DEF=Protein with similarity to heat shock transcription factors; overexpression suppresses the pseudohyphal filamentation defect of a diploid mep1 mep2 homozygous null mutant /NOTE=Hms2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IGI] [pmid 9832522] --- --- --- --- --- --- S0003908 // HMS2 SGDID:S0003908, Chr X from 704111-705187, Verified ORF // sgd // 11 // --- /// GENSCAN00000024250 // cdna:Genscan chromosome:SGD1:X:704111:705187:1 // ensembl // 11 // --- /// GENEFINDER00000024447 // cdna:GeneFinder chromosome:SGD1:X:704111:705187:1 // ensembl // 11 // --- /// YJR147W // cdna:known chromosome:SGD1:X:704111:705187:1 gene:YJR147W // ensembl // 11 // --- --- No cerevisiae_gene 4.58893854758931 -1.64032520266032 1.19122670958164 -1.01783736151413 -1.25817419139645 Max fold change at or above threshold 4 4.58893854758931 Max fold change at or above threshold 0.836046318078045 -1.29326334639786 0.74045456787096 -0.283237539551146 34.9432053565979 7.56572427671396 0.216514890362953 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1772113_at SPAC26F1.13c.S1 --- 4.58353373756121 --- --- --- --- 12.2614727020264 7.39288377761841 10.2674827575684 5.3800253868103 0.030273400247097 0.24609400331974 0.149657994508743 0.129638999700546 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26F1.13c /DEF=leucine-tRNA ligase (predicted) --- --- --- --- --- --- D89170 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0717. // gb // 10 // --- /// SPAC26F1.13c // |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -4.58353373756121 -1.65855071861773 -1.37648606666465 -1.19420436260175 -2.2790733910079 Max fold change at or above threshold 4 4.58353373756121 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1777189_at YOL089C.S1 Putative transcription factor containing a zinc finger; overexpression increases salt tolerance through increased expression of the ENA1 (Na+/Li+ extrusion pump) gene while gene disruption decreases both salt tolerance and ENA1 expression 4.58157525871765 496.009811401367 1857.67242431641 HAL9 6367 // transcription initiation from RNA polymerase II promoter // inferred from mutant phenotype /// 9651 // response to salt stress // inferred from mutant phenotype 5634 // nucleus // inferred from sequence similarity /// 5739 // mitochondrion // inferred from direct assay 3704 // specific RNA polymerase II transcription factor activity // inferred from mutant phenotype 1820.34130859375 594.701843261719 397.317779541016 1895.00354003906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL089C /GEN=HAL9 /DB_XREF=GI:6324483 /SEG=NC_001147:-150397,153489 /DEF=Putative transcription factor containing a zinc finger; overexpression increases salt tolerance through increased expression of the ENA1 (Na+/Li+ extrusion pump) gene while gene disruption decreases both salt tolerance and ENA1 expression /NOTE=Hal9p; go_component: nucleus [goid GO:0005634] [evidence ISS] [pmid 9559673]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IMP] [pmid 9559673]; go_process: response to salt stress [goid GO:0009651] [evidence IMP] [pmid 9559673]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence IMP] [pmid 9559673] --- --- --- --- --- --- S0005449 // HAL9 SGDID:S0005449, Chr XV from 153489-150397, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017395 // cdna:Genscan chromosome:SGD1:XV:150397:153489:-1 // ensembl // 11 // --- /// GENEFINDER00000022589 // cdna:GeneFinder chromosome:SGD1:XV:150397:153489:-1 // ensembl // 11 // --- /// YOL089C // cdna:known chromosome:SGD1:XV:150397:153489:-1 gene:YOL089C // ensembl // 11 // --- --- No cerevisiae_gene -2.49894841216143 -3.06093100133985 -1.26123073433304 -4.58157525871765 1.04101551236179 Max fold change at or above threshold 4 4.58157525871765 Max fold change at or above threshold 0.813668418328308 -0.736081122629268 -0.985661746292224 0.908074450593184 1176.84111785889 790.86293168038 0.672021838529278 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773222_at SPAC144.08.S1 --- 4.5810955719124 --- --- --- --- 1.12603437900543 2.38148736953735 5.15847110748291 0.511198163032532 0.904784977436066 0.919434010982513 0.870360970497131 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC144.08 /DEF=chaperone activity (predicted) --- --- --- --- --- --- SPAC144.08 // |||co-chaperone|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.22974030636276 2.1149330908003 2.5901033267375 4.5810955719124 -2.2027355738635 Max fold change at or above threshold 1 4.5810955719124 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773000_at SPCC70.06.S1 --- 4.58085803902613 --- --- --- --- 1.54095983505249 2.2140634059906 1.03891921043396 0.926392614841461 0.805419981479645 0.82275390625 0.953857004642487 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC70.06 /DEF=SAC3GANp family --- --- --- --- --- --- SPCC70.06 // |||SAC3/GANp family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.12747591647865 1.4368079917639 -4.58085803902613 -1.48323355615768 -1.66339822917976 Max fold change at or above threshold 0 4.58085803902613 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770371_at SPBC21C3.01c.S1 --- 4.57845877818306 --- --- --- --- 0.363571584224701 1.63254714012146 0.910048544406891 0.448166072368622 0.601073980331421 0.780517995357513 0.696289002895355 0.916015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21C3.01c /GEN=vps13a /DEF=involved in intracellular protein transport (predicted) --- --- --- --- --- --- SPBC21C3.01c // |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.57845877818306 4.49030455337369 -1.13171391217848 2.5030794041496 1.23267629213739 Max fold change at or above threshold 0 4.57845877818306 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775157_at SPAC31G5.18c.S1 --- 4.57815802203565 --- --- --- --- 5.51360034942627 1.20432722568512 6.71881151199341 7.35099124908447 0.296142578125 0.432372987270355 0.194580003619194 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31G5.18c /DEF=ubiquitin family protein --- --- --- --- --- --- SPAC31G5.18c // |||ubiquitin family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.29714643213641 -4.57815802203565 -1.46150394559089 1.21858877796476 1.33324702249219 Max fold change at or above threshold 3 4.57815802203565 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772088_at SPAP8A3.10.S1 --- 4.5753745929331 --- --- --- --- 1.25233376026154 5.35195732116699 5.729896068573 3.41187787055969 0.601073980331421 0.466064006090164 0.0461426004767418 0.274170011281967 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP8A3.10 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAP8A3.10 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.90707877489414 4.27358703485666 -1.78933286936509 4.5753745929331 2.72441578980284 Max fold change at or above threshold 3 4.5753745929331 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1779264_at SPBC3H7.15.S1 --- 4.57421800640145 --- --- --- --- 5.54280281066895 3.38483500480652 2.37097096443176 6.28698205947876 0.657470703125 0.870360970497131 0.780517995357513 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3H7.15 /GEN=hhp1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- X78871 // S.pombe hhp1+ mRNA. // gb // 11 // --- /// U10863 // Schizosaccharomyces pombe SP66 casein kinase-1 (hhp1) gene, complete cds. // gb // 11 // --- /// SPBC3H7.15 // |hhp1||serine/threonine protein kinase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.57421800640145 -1.63754002862712 1.11202682358204 -2.33777759990298 1.13426045887424 Max fold change at or above threshold 3 4.57421800640145 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771823_at SPCC1739.10.S1 --- 4.57406469216532 --- --- --- --- 1.30098330974579 5.95078182220459 0.964220881462097 3.63785362243652 0.780517995357513 0.398925989866257 0.696289002895355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1739.10 /DEF=membrane anchored protein (predicted) --- --- --- --- --- --- SPCC1739.10 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 3.76503685043734 4.57406469216532 -1.93931621995151 -1.34925859287868 2.79623389107686 Max fold change at or above threshold 2 4.57406469216532 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772805_at YGR090W.S1 Possible U3 snoRNP protein involved in maturation of pre-18S rRNA, based on computational analysis of large-scale protein-protein interaction data 4.57129533473665 111.828826904297 501.588562011719 UTP22 6365 // 35S primary transcript processing // inferred from mutant phenotype /// 6365 // 35S primary transcript processing // inferred from physical interaction /// 6365 // 35S primary transcript processing // RCA 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction 30515 // snoRNA binding // RCA 466.982238769531 102.155342102051 121.502311706543 536.194885253906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR090W /GEN=UTP22 /DB_XREF=GI:6321527 /SEG=NC_001139:+662360,666073 /DEF=Possible U3 snoRNP protein involved in maturation of pre-18S rRNA, based on computational analysis of large-scale protein-protein interaction data /NOTE=Utp22p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: snoRNA binding [goid GO:0030515] [evidence TAS] [pmid 14566057]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP] [pmid 12837249]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0003322 // UTP22 SGDID:S0003322, Chr VII from 662362-666075, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019409 // cdna:Genscan chromosome:SGD1:VII:662362:666075:1 // ensembl // 11 // --- /// GENEFINDER00000021735 // cdna:GeneFinder chromosome:SGD1:VII:662362:666075:1 // ensembl // 11 // --- /// YGR090W // cdna:known chromosome:SGD1:VII:662362:666075:1 gene:YGR090W // ensembl // 11 // --- --- No cerevisiae_gene 1.05795547714643 -4.57129533473665 -1.36785003029869 -3.84340209013804 1.14821258869876 Max fold change at or above threshold 4 4.57129533473665 Max fold change at or above threshold 0.706261049716498 -0.901384354969679 -0.816130041037848 1.01125334629103 306.708694458008 226.93244144762 0.739895691084458 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770000_at SPAC20H4.06c.S1 --- 4.57016231928064 --- --- --- --- 1.44078648090363 0.801055669784546 0.719374001026154 2.20263695716858 0.828612983226776 0.850341975688934 0.888427972793579 0.390625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20H4.06c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC20H4.06c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.57016231928064 -1.79860967876445 -1.12028774788496 -2.00283368435391 1.52877403165745 Max fold change at or above threshold 0 4.57016231928064 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771378_at YOR047C.S1 Protein involved in control of glucose-regulated gene expression; interacts with protein kinase Snf1p, glucose sensors Snf3p and Rgt2p, and TATA-binding protein Spt15p; acts as a regulator of the transcription factor Rgt1p 4.5696672755832 166.150505065918 719.274780273438 STD1 6006 // glucose metabolism // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from physical interaction /// 7165 // signal transduction // inferred from mutant phenotype /// 9651 // response to salt stress // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 30295 // protein kinase activator activity // inferred from genetic interaction /// 30295 // protein kinase activator activity // inferred from physical interaction 690.768005371094 181.137268066406 151.16374206543 747.781555175781 0.000244141003349796 0.000244141003349796 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR047C /GEN=STD1 /DB_XREF=GI:6324621 /SEG=NC_001147:-416347,417681 /DEF=interacts with the SNF1 protein kinase and TBP in two-hybrid and in in vitro binding studies /NOTE=Std1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10373505]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 10373505]; go_function: protein kinase activator activity [goid GO:0030295] [evidence IGI,IPI] [pmid 12618390]; go_process: glucose metabolism [goid GO:0006006] [evidence IMP] [pmid 10373505]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP,IPI] [pmid 7667094]; go_process: response to salt stress [goid GO:0009651] [evidence IMP] [pmid 9725828]; go_process: signal transduction [goid GO:0007165] [evidence IMP] [pmid 10373505] --- --- --- --- --- --- S0005573 // STD1 SGDID:S0005573, Chr XV from 417681-416347, reverse complement, Verified ORF // sgd // 11 // --- /// YOR047C // cdna:known chromosome:SGD1:XV:416347:417681:-1 gene:YOR047C // ensembl // 11 // --- --- No cerevisiae_gene 1.40242621565476 -3.81350570616894 -1.36059150491608 -4.5696672755832 1.08253646573289 Max fold change at or above threshold 4 4.5696672755832 Max fold change at or above threshold 0.774139317425882 -0.816333014313985 -0.909875378028868 0.952069074916971 442.712642669678 320.427288884169 0.723781654284605 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769733_at SPAC9E9.08.S1 --- 4.56604404771068 --- --- --- --- 2.77910351753235 4.66702842712402 3.45863914489746 0.608645796775818 0.334473013877869 0.149657994508743 0.111571997404099 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9E9.08 /GEN=rad26 /DEF=involved in DNA repair --- --- --- --- --- --- SPAC9E9.08 // |rad26||ATR |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.01294532919884 1.67932874672766 1.19083782692863 1.24451612654159 -4.56604404771068 Max fold change at or above threshold 3 4.56604404771068 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775253_at SPBC1685.04.S1 --- 4.56524924642281 --- --- --- --- 1.28277254104614 2.28357887268066 5.85617637634277 1.39894807338715 0.904784977436066 0.888427972793579 0.601073980331421 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1685.04 /DEF=sequence orphan --- --- --- --- --- --- SPBC1685.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.97191486314549 1.78019001780186 1.12560298256355 4.56524924642281 1.09056596444313 Max fold change at or above threshold 1 4.56524924642281 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780058_at YJR144W.S1 Protein involved in mitochondrial genome maintenance; component of the mitochondrial nucleoid, required for the repair of oxidative mtDNA damage 4.56509539789613 181.870792388916 577.144134521484 MGM101 2 // mitochondrial genome maintenance // inferred from mutant phenotype /// 6281 // DNA repair // inferred from mutant phenotype 262 // mitochondrial chromosome // inferred from direct assay /// 42645 // mitochondrial nucleoid // inferred from direct assay 3677 // DNA binding // inferred from direct assay 550.453186035156 120.578681945801 243.162902832031 603.835083007813 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR144W /GEN=MGM101 /DB_XREF=GI:6322604 /SEG=NC_001142:+700797,701606 /DEF=Involved in mitochondrial genome maintenance /NOTE=Mgm101p; go_component: mitochondrial chromosome [goid GO:0000262] [evidence IDA] [pmid 10209025]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 10209025]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 10209025]; go_process: mitochondrial genome maintenance [goid GO:0000002] [evidence IMP] [pmid 11973295] --- --- --- --- --- --- S0003905 // MGM101 SGDID:S0003905, Chr X from 700797-701606, Verified ORF // sgd // 11 // --- /// GENSCAN00000024248 // cdna:Genscan chromosome:SGD1:X:700797:701606:1 // ensembl // 11 // --- /// GENEFINDER00000024498 // cdna:GeneFinder chromosome:SGD1:X:700797:701606:1 // ensembl // 11 // --- /// YJR144W // cdna:known chromosome:SGD1:X:700797:701606:1 gene:YJR144W // ensembl // 11 // --- --- No cerevisiae_gene 1.06926166682837 -4.56509539789613 1.11421951794204 -2.26372189023994 1.09697808701437 Max fold change at or above threshold 4 4.56509539789613 Max fold change at or above threshold 0.728519346087205 -1.10347672782602 -0.581059582238328 0.956016963977142 379.5074634552 234.6481579358 0.618296556804078 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778004_at YDR488C.S1 Dynein intermediate chain, acts in the cytoplasmic dynein pathway, forms cortical cytoplasmic microtubule capture site with Num1p; null mutant is defective in nuclear migration, essential in the absence of CIN8 4.56297617634076 82.2750396728516 357.275772094727 PAC11 7017 // microtubule-based process // inferred from genetic interaction /// 30473 // nuclear migration, microtubule-mediated // inferred from mutant phenotype 5868 // cytoplasmic dynein complex // traceable author statement /// 5881 // cytoplasmic microtubule // inferred from physical interaction /// 5881 // cytoplasmic microtubule // inferred from direct assay 3777 // microtubule motor activity // inferred from sequence similarity /// 8574 // plus-end-directed microtubule motor activity // inferred from mutant phenotype 330.132537841797 72.3502655029297 92.1998138427734 384.419006347656 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR488C /GEN=PAC11 /DB_XREF=GI:6320696 /SEG=NC_001136:-1429176,1430777 /DEF=Dynein intermediate chain, acts in the cytoplasmic dynein pathway, forms cortical cytoplasmic microtubule capture site with Num1p; null mutant is defective in nuclear migration, essential in the absence of CIN8 /NOTE=Pac11p; go_component: cell [goid GO:0005623] [evidence NAS] [pmid 9153752]; go_function: microtubule motor activity [goid GO:0003777] [evidence ISS] [pmid 9201714]; go_process: microtubule-based process [goid GO:0007017] [evidence IGI] [pmid 9201714] --- --- --- --- --- --- S0002896 // PAC11 SGDID:S0002896, Chr IV from 1430779-1429178, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023672 // cdna:GeneFinder chromosome:SGD1:IV:1429178:1430683:-1 // ensembl // 10 // --- /// GENSCAN00000025483 // cdna:Genscan chromosome:SGD1:IV:1429178:1430779:-1 // ensembl // 10 // --- /// YDR488C // cdna:known chromosome:SGD1:IV:1429178:1430779:-1 gene:YDR488C // ensembl // 10 // --- --- No cerevisiae_gene 1.05426795860113 -4.56297617634076 -1.39096659780914 -3.58062043817969 1.1644384066495 Max fold change at or above threshold 4 4.56297617634076 Max fold change at or above threshold 0.68751592149169 -0.918446587381012 -0.794785521929852 1.02571618781917 219.775405883789 160.515747356902 0.730362647774056 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772685_at SPBC646.16.S1 --- 4.56222487032868 --- --- --- --- 1.53117156028748 4.32204723358154 6.9855489730835 4.83687829971313 0.601073980331421 0.303710997104645 0.129638999700546 0.107421875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC646.16 /DEF=20S proteasome component (alpha 1) --- --- --- --- --- --- SPBC646.16 // |||20S proteasome component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.93940542396114 2.82270605442155 2.80628239641905 4.56222487032868 3.15893948474658 Max fold change at or above threshold 3 4.56222487032868 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776573_at SPCC584.11c.S1 --- 4.55807260645103 --- --- --- --- 3.40187859535217 3.04161024093628 1.31033945083618 0.746341466903687 0.398925989866257 0.366210997104645 0.533936023712158 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC584.11c /DEF=conserved fungal protein --- --- --- --- --- --- SPCC584.11c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -1.09378199473274 -1.11844658778667 -2.50797586924614 -2.59618115991341 -4.55807260645103 Max fold change at or above threshold 2 4.55807260645103 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777523_at SPAC2F7.16c.S1 --- 4.55747113083234 --- --- --- --- 5.07396936416626 6.27143287658691 5.69046068191528 1.11333000659943 0.24609400331974 0.432372987270355 0.366210997104645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F7.16c /DEF=phospholipase D (predicted) --- --- --- --- --- --- SPAC2F7.16c // |||phospholipase D |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.19635923139852 1.23600132883684 -4.4075989965262 1.12150079622137 -4.55747113083234 Max fold change at or above threshold 3 4.55747113083234 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779287_at YNR053C.S1 Putative GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation 4.5564529750076 433.123779296875 550.128219604492 NOG2 55 // ribosomal large subunit-nucleus export // inferred from mutant phenotype /// 55 // ribosomal large subunit-nucleus export // inferred from physical interaction /// 42255 // ribosome assembly // traceable author statement 5634 // nucleus // inferred from direct assay /// 5654 // nucleoplasm // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay 3924 // GTPase activity // traceable author statement 475.739105224609 346.836853027344 519.410705566406 624.517333984375 0.000732421991415322 0.00195312988944352 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR053C /GEN=NOG2 /DB_XREF=GI:6324381 /SEG=NC_001146:-721119,723110 /DEF=Putative GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation /NOTE=Nog2p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11707418]; go_component: nucleoplasm [goid GO:0005654] [evidence IDA] [pmid 11707418]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10684247]; go_function: GTPase activity [goid GO:0003924] [evidence TAS] [pmid 12362983]; go_process: ribosomal large subunit-nucleus export [goid GO:0000055] [evidence IMP,IPI] [pmid 11707418]; go_process: ribosome assembly [goid GO:0042255] [evidence TAS] [pmid 15116429] --- --- --- --- --- --- S0005336 // NOG2 SGDID:S0005336, Chr XIV from 723111-722302,721770-721120, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YNR053C // cdna:known chromosome:SGD1:XIV:721120:723111:-1 gene:YNR053C // ensembl // 11 // --- --- No cerevisiae_gene 4.5564529750076 -1.37165096809105 1.33571663489537 1.09179737352299 1.31273071127824 Max fold change at or above threshold 4 4.5564529750076 Max fold change at or above threshold -0.138193262352896 -1.25945853310291 0.241687212554507 1.1559645829013 491.625999450684 114.96142399117 0.23383918694215 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769717_at YPR031W.S1 Component of the histone acetyltransferase complex 4.55640731214987 231.137184143066 939.159149169922 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 930.687561035156 258.015289306641 204.259078979492 947.630737304688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR031W /GEN=CSR2 /DB_XREF=GI:6325288 /SEG=NC_001148:+631510,633756 /DEF=Component of the histone acetyltransferase complex /NOTE=Ypr031wp --- --- --- --- --- --- S0006235 // NTO1 SGDID:S0006235, Chr XVI from 631512-633758, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017210 // cdna:Genscan chromosome:SGD1:XVI:631512:633758:1 // ensembl // 11 // --- /// YPR031W // cdna:known chromosome:SGD1:XVI:631512:633758:1 gene:YPR031W // ensembl // 11 // --- --- No cerevisiae_gene -3.73773723816676 -3.60710236798825 -1.04630180282828 -4.55640731214987 1.01820500990761 Max fold change at or above threshold 4 4.55640731214987 Max fold change at or above threshold 0.843965124277763 -0.799007997291786 -0.930305231319279 0.885348104333302 585.148166656494 409.423783564946 0.699692499943001 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776639_at SPBC17D11.07c.S1 --- 4.55209140049605 --- --- --- --- 1.68813002109528 7.68452215194702 1.41856777667999 3.68249106407166 0.633789002895355 0.466064006090164 0.805419981479645 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17D11.07c /GEN=rpn2 /DEF=19S proteasome regulatory subunit --- --- --- --- --- --- SPBC17D11.07c // |rpn2||19S proteasome regulatory subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.03677605795215 4.55209140049605 3.01090433831194 -1.19002422643926 2.18140250931763 Max fold change at or above threshold 2 4.55209140049605 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780156_at SPBC1D7.03.S1 --- 4.54950871163474 --- --- --- --- 3.28689813613892 9.28201293945313 5.61112260818481 8.60116291046143 0.725830018520355 0.366210997104645 0.696289002895355 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1D7.03 /DEF=cyclin --- --- --- --- --- --- SPBC1D7.03 // |||cyclin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.54950871163474 2.8239429866715 1.81847812131653 1.7071178892012 2.61680239368936 Max fold change at or above threshold 4 4.54950871163474 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779532_at YJL177W.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl17Bp and has similarity to E. coli L22 and rat L17 ribosomal proteins; copurifies with the components of the outer kinetochore DASH complex /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl17Ap and has similarity to E. coli L22 and rat L17 ribosomal proteins 4.5456727526154 566.327621459961 1986.78131103516 RPL17A /// RPL17B 6412 // protein biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement /// 42729 // DASH complex // inferred from direct assay /// 42729 // DASH complex // inferred from physical interaction 3735 // structural constituent of ribosome // traceable author statement 2090.42724609375 459.871917724609 672.783325195313 1883.13537597656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL177W /GEN=RPL17B /DB_XREF=GI:6322284 /SEG=NC_001142:+90784,91655 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl17Ap and has similarity to E. coli L22 and rat L17 ribosomal proteins /NOTE=Rpl17bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0003713 // RPL17B SGDID:S0003713, Chr X from 90784-91092,91410-91655, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024338 // cdna:GeneFinder chromosome:SGD1:X:90784:91655:1 // ensembl // 11 // --- /// YJL177W // cdna:known chromosome:SGD1:X:90784:91655:1 gene:YJL177W // ensembl // 11 // --- GENSCAN00000024003 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 1.64897896498524 -4.5456727526154 -1.5274176098127 -3.10713296214184 -1.11007805002319 Max fold change at or above threshold 4 4.5456727526154 Max fold change at or above threshold 0.981724765139183 -0.985114016583133 -0.728292057831631 0.731681309275582 1276.55446624756 829.023376761617 0.649422644063545 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777165_at SPAC3F10.11c.S1 --- 4.54520531470876 --- --- --- --- 1.16768252849579 0.538981437683105 5.30735683441162 0.749756217002869 0.533936023712158 0.943848013877869 0.5 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3F10.11c /DEF=transporter activity --- --- --- --- --- --- SPAC3F10.11c // |||ABC transporter family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- D89231 // gb // 8 // Cross Hyb Matching Probes No No -2.98232250613919 -2.16646148987106 -2.18097380688851 4.54520531470876 -1.55741626680145 Max fold change at or above threshold 1 4.54520531470876 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776056_at SPAC3A11.12c.S1 --- 4.54519158964986 --- --- --- --- 5.26110219955444 1.1575094461441 2.39604043960571 3.43261170387268 0.334473013877869 0.780517995357513 0.466064006090164 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A11.12c /GEN=rpt5 /DEF=19S proteasome regulatory subunit --- --- --- --- --- --- SPAC3A11.12c // |rpt5|pam2, tbp1|19S proteasome regulatory subunit|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.72207928787688 -4.54519158964986 1.07411515162556 -2.19574849931172 -1.53268200816855 Max fold change at or above threshold 2 4.54519158964986 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776484_at YLR154W-F.S1 Identified by expression profiling and mass spectrometry; encoded within the the 35S rRNA transcript on the opposite strand 4.54455529695505 16.3673605918884 10.0597026348114 --- --- --- --- 14.354546546936 19.5765991210938 13.1581220626831 5.76485872268677 0.0566405989229679 0.00292969006113708 0.016601599752903 0.0566405989229679 M P P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR154W-F /GEN=TAR1 /DB_XREF=GI:33438832 /SEG=NC_001144:+455884,456024 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Ylr154w-fp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028843 // YLR154W-F SGDID:S0028843, Chr XII from 455884-456024, Uncharacterized ORF // sgd // 9 // --- /// YLR154W-F // cdna:known chromosome:SGD1:XII:455884:456024:1 gene:YLR154W-F // ensembl // 9 // --- --- No cerevisiae_gene -2.74972159034028 1.3637908419526 -4.54455529695505 -1.09092668988427 -2.4900083831102 Max fold change at or above threshold 4 4.54455529695505 Max fold change at or above threshold 0.200377217742811 1.1174382788349 -0.00973064529847938 -1.30808485127923 13.2135316133499 5.69433464761767 0.430947214888755 MAPAPM No 3 0 MPPM 0 2 2 No No 1 < x = 2
1774106_at SPAC26A3.02.S1 --- 4.54360067764922 --- --- --- --- 1.4440586566925 6.56122589111328 3.47980213165283 1.23243391513824 0.601073980331421 0.24609400331974 0.5 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26A3.02 /GEN=myh1 /DEF=MutY family --- --- --- --- --- --- AF053340 // Schizosaccharomyces pombe A/G-specific adenine DNA glycosylase (myh) mRNA, complete cds. // gb // 11 // --- /// SPAC26A3.02 // |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.17821741801516 4.54360067764922 -1.01357438273596 2.40973738533795 -1.17171285125704 Max fold change at or above threshold 2 4.54360067764922 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778614_at SPAC823.09c.S1 --- 4.54244482709439 --- --- --- --- 6.08602714538574 4.37181615829468 2.54024267196655 4.08101654052734 0.194580003619194 0.274170011281967 0.398925989866257 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC823.09c /DEF=similar to L-asparaginase --- --- --- --- --- --- SPAC823.09c // |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.79787625535956 -1.3921050028233 -4.54244482709439 -2.3958447799297 -1.49130175899736 Max fold change at or above threshold 4 4.54244482709439 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769602_at YBL031W.S1 Cytoskeletal protein of unknown function; overexpression causes growth arrest 4.54199623324522 41.9296627044678 175.836158752441 SHE1 --- 15630 // microtubule cytoskeleton // inferred from direct assay --- 165.252624511719 36.3832588195801 47.4760665893555 186.419692993164 0.000244141003349796 0.00805663969367743 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL031W /GEN=SHE1 /DB_XREF=GI:6319440 /SEG=NC_001134:+161664,162680 /DEF=Cytoskeletal protein of unknown function; overexpression causes growth arrest /NOTE=She1p; go_component: microtubule cytoskeleton [goid GO:0015630] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000127 // SHE1 SGDID:S0000127, Chr II from 161702-162718, Verified ORF // sgd // 11 // --- /// GENSCAN00000021114 // cdna:Genscan chromosome:SGD1:II:161702:162718:1 // ensembl // 11 // --- /// YBL031W // cdna:known chromosome:SGD1:II:161702:162718:1 gene:YBL031W // ensembl // 11 // --- --- No cerevisiae_gene 1.79909706337842 -4.54199623324522 -1.18602846995043 -3.48075643968302 1.12808915164881 Max fold change at or above threshold 4 4.54199623324522 Max fold change at or above threshold 0.723392531268646 -0.930388025600145 -0.78803402461466 0.99502951894616 108.882910728455 77.9241025400222 0.715668804394463 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1779074_at YLR264C-A.S1 Identified by SAGE 4.54178977269565 864.967987060547 2553.01684570313 --- --- --- --- 2739.58325195313 1126.74133300781 603.194641113281 2366.45043945313 0.000244141003349796 0.000244141003349796 0.00122069998178631 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR264C-A /GEN=RPS28B /DB_XREF=GI:33438841 /SEG=NC_001144:-673830,673946 /DEF=Identified by SAGE /NOTE=Ylr264c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028808 // YLR264C-A SGDID:S0028808, Chr XII from 673946-673830, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YLR264C-A // cdna:known chromosome:SGD1:XII:673830:673946:-1 gene:YLR264C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.38430673777523 -2.43142163307337 -1.52150521633281 -4.54178977269565 -1.15767615762375 Max fold change at or above threshold 4 4.54178977269565 Max fold change at or above threshold 1.0210755947999 -0.57687527460833 -1.09558816373992 0.651387843548357 1708.99241638184 1009.3188406616 0.590592931242179 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779245_at SPCC338.14.S1 --- 4.54161988051691 --- --- --- --- 3.47276663780212 8.00685787200928 6.57528781890869 2.87114262580872 0.45751953125 0.432372987270355 0.5 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC338.14 /DEF=adenosine kinase (predicted) --- --- --- --- --- --- D89173 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1001. // gb // 11 // --- /// SPCC338.14 // |||adenosine kinase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.54161988051691 2.30561356609805 2.76192068304476 1.89338602465673 -1.20954166699537 Max fold change at or above threshold 4 4.54161988051691 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779217_at YNL310C.S1 Essential component of the mitochondrial import system; zinc finger protein that may act with Pam18p to facilitate recognition and folding of imported proteins by Ssc1p (mtHSP70) in the mitochondrial matrix 4.53857790407152 189.424724578857 569.553253173828 ZIM17 6457 // protein folding // inferred from mutant phenotype /// 6457 // protein folding // inferred from physical interaction /// 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype /// 30150 // mitochondrial matrix protein import // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5739 // mitochondrion // inferred from physical interaction /// 5759 // mitochondrial matrix // inferred from direct assay 5515 // protein binding // inferred from sequence similarity /// 5515 // protein binding // inferred from direct assay 512.159118652344 112.845726013184 266.003723144531 626.947387695313 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL310C /GEN=RFA2 /DB_XREF=GI:6324019 /SEG=NC_001146:-51906,52523 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ynl310cp --- --- --- --- --- --- S0005254 // FMP28 SGDID:S0005254, Chr XIV from 52523-51906, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019794 // cdna:Genscan chromosome:SGD1:XIV:51906:52523:-1 // ensembl // 11 // --- /// YNL310C // cdna:known chromosome:SGD1:XIV:51906:52523:-1 gene:YNL310C // ensembl // 11 // --- --- No cerevisiae_gene -1.75115569453791 -4.53857790407152 1.52441762009435 -1.92538327132386 1.22412618434875 Max fold change at or above threshold 4 4.53857790407152 Max fold change at or above threshold 0.569491392666007 -1.14457597478296 -0.487139660885235 1.06222424300219 379.488988876343 232.962484568768 0.613884701262517 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775950_at SPBC609.05.S1 --- 4.53839445946091 --- --- --- --- 7.77132034301758 1.71235013008118 2.04018807411194 5.72979927062988 0.326416015625 0.398925989866257 0.334473013877869 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC609.05 /DEF=FACT complex component --- --- --- --- --- --- SPBC609.05 // |||FACT complex component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.805438191234 -4.53839445946091 -1.11725584167769 -3.80911958148776 -1.35629888168199 Max fold change at or above threshold 2 4.53839445946091 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770894_at SPBC4.07c.S1 --- 4.53823673326335 --- --- --- --- 4.05980968475342 18.4243774414063 17.4339141845703 8.65887260437012 0.334473013877869 0.303710997104645 0.274170011281967 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4.07c /GEN=rpt2 /DEF=19S proteasome regulatory subunit (PMID 8247131) --- --- --- --- --- --- Z29366 // S.pombe(972) mts2 mRNA for 26S protease subunit. // gb // 11 // --- /// SPBC4.07c // |rpt2|mts2|19S proteasome regulatory subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.54549380681646 4.53823673326335 -1.36784472316571 4.29426882990186 2.13282722017449 Max fold change at or above threshold 4 4.53823673326335 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776569_at SPAC17C9.02c.S1 --- 4.53536382304967 --- --- --- --- 1.20054137706757 2.12048053741455 4.51435804367065 2.73385787010193 0.4912109375 0.466064006090164 0.366210997104645 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17C9.02c /GEN=lys7 /DEF=alpha-aminoadipate reductase-phosphopantetheinyl transferase (predicted) --- --- --- --- --- --- SPAC17C9.02c // |lys7||alpha-aminoadipate reductase phosphopantetheinyl transferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.53536382304967 1.76627026599785 3.25121054574128 3.76026860040209 2.27718754415581 Max fold change at or above threshold 2 4.53536382304967 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774377_at YML042W.S1 Carnitine acetyl-CoA transferase present in both mitochondria and peroxisomes, transfers activated acetyl groups to carnitine to form acetylcarnitine which can be shuttled across membranes 4.53468254259981 2932.3876953125 1574.56610107422 CAT2 9437 // carnitine metabolism // inferred from mutant phenotype 5739 // mitochondrion // inferred from sequence similarity /// 5739 // mitochondrion // inferred from direct assay /// 5777 // peroxisome // inferred from sequence similarity /// 5782 // peroxisomal matrix // traceable author statement 4092 // carnitine O-acetyltransferase activity // inferred from mutant phenotype /// 4092 // carnitine O-acetyltransferase activity // inferred from sequence similarity 1818.431640625 3268.9970703125 2595.7783203125 1330.70056152344 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML042W /GEN=CAT2 /DB_XREF=GI:6323599 /SEG=NC_001145:+192788,194800 /DEF=Carnitine O-acetyltransferase, peroxisomal and mitochondrial /NOTE=Cat2p; go_component: mitochondrion [goid GO:0005739] [evidence ISS] [pmid 7628448]; go_component: peroxisomal matrix [goid GO:0005782] [evidence TAS]; go_component: peroxisome [goid GO:0005777] [evidence ISS] [pmid 7628448]; go_function: carnitine O-acetyltransferase activity [goid GO:0004092] [evidence IMP,ISS] [pmid 8420957]; go_process: carnitine metabolism [goid GO:0009437] [evidence IMP] [pmid 11329169] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 9.5 --- S0004506 // CAT2 SGDID:S0004506, Chr XIII from 192788-194800, Verified ORF // sgd // 10 // --- /// GENSCAN00000018682 // cdna:Genscan chromosome:SGD1:XIII:192788:194800:1 // ensembl // 10 // --- /// GENEFINDER00000021899 // cdna:GeneFinder chromosome:SGD1:XIII:192854:194800:1 // ensembl // 10 // --- /// YML042W // cdna:known chromosome:SGD1:XIII:192788:194800:1 gene:YML042W // ensembl // 10 // --- --- No cerevisiae_gene -4.53468254259981 1.79770138028886 1.0662955661268 1.4274819368081 -1.36652203598922 Max fold change at or above threshold 4 4.53468254259981 Max fold change at or above threshold -0.50927126182424 1.18878491482422 0.400703775375496 -1.08021742837548 2253.47689819336 854.250554036764 0.379081123361694 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770650_at YDR540C.S1 Hypothetical protein 4.53408852835763 121.882751464844 25.7395238876343 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 28.3228321075439 128.418228149414 115.347274780273 23.1562156677246 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR540C /GEN=PAD1 /DB_XREF=GI:6320749 /SEG=NC_001136:-1517116,1517655 /DEF=Hypothetical ORF /NOTE=Ydr540cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002948 // YDR540C SGDID:S0002948, Chr IV from 1517657-1517118, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDR540C // cdna:known chromosome:SGD1:IV:1517118:1517657:-1 gene:YDR540C // ensembl // 11 // --- --- No cerevisiae_gene -1.11660389211023 4.53408852835763 1.14425447466588 4.07258971639175 -1.2231200690975 Max fold change at or above threshold 4 4.53408852835763 Max fold change at or above threshold -0.815142743018698 0.978549826380158 0.744320552504472 -0.907727635865931 73.811137676239 55.8040980653761 0.756038991163528 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779008_at SPCC1259.09c.S1 --- 4.53175329655377 --- --- --- --- 1.01539814472198 3.31812381744385 3.93340539932251 1.40847527980804 0.725830018520355 0.665526986122131 0.171387001872063 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1259.09c /DEF=pyruvate dehydrogenase protein x component (predicted) --- --- --- --- --- --- SPCC1259.09c // |||pyruvate dehydrogenase protein x component|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- D89260 // gb // 8 // Cross Hyb Matching Probes No No -1.58421873727133 3.26780567277119 -4.53175329655377 3.87375673253714 1.38711626284652 Max fold change at or above threshold 2 4.53175329655377 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770454_at SPAC2F3.04c.S1 --- 4.53054162329036 --- --- --- --- 1.1198205947876 0.677714407444 2.88754963874817 0.250795155763626 0.780517995357513 0.932372987270355 0.633789002895355 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F3.04c /GEN=rim1 /DEF=single-stranded DNA binding protein --- --- --- --- --- --- AB191155 // Schizosaccharomyces pombe rim1 mRNA for mitochondrial single-stranded DNA binding protein, complete cds. // gb // 11 // --- /// SPAC2F3.04c // |rim1||single-stranded DNA binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.0065351619486 -1.65234881018835 -4.53054162329036 2.5785823659511 -4.46508064072428 Max fold change at or above threshold 1 4.53054162329036 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777374_at YGL009C.S1 Isopropylmalate isomerase, catalyzes the second step in the leucine biosynthesis pathway 4.52938561890517 741.415466308594 2891.19067382813 LEU1 9098 // leucine biosynthesis // traceable author statement 5829 // cytosol // traceable author statement 3861 // 3-isopropylmalate dehydratase activity // traceable author statement 2981.095703125 658.167785644531 824.663146972656 2801.28564453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL009C /GEN=LEU1 /DB_XREF=GI:6321429 /SEG=NC_001139:-476316,478655 /DEF=LEU1 encodes the second enzyme in leucine biosynthesis. /NOTE=Leu1p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: 3-isopropylmalate dehydratase activity [goid GO:0003861] [evidence TAS]; go_process: leucine biosynthesis [goid GO:0009098] [evidence TAS] [pmid 1126953] --- --- --- --- scop // a.139.1.Type I dockerin domain // All alpha proteins; Type I dockerin domain; Type I dockerin domain; Type I dockerin domain // 7.80000019073486 --- S0002977 // LEU1 SGDID:S0002977, Chr VII from 478657-476318, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019333 // cdna:Genscan chromosome:SGD1:VII:476318:478657:-1 // ensembl // 11 // --- /// GENEFINDER00000021455 // cdna:GeneFinder chromosome:SGD1:VII:476318:478657:-1 // ensembl // 11 // --- /// YGL009C // cdna:known chromosome:SGD1:VII:476318:478657:-1 gene:YGL009C // ensembl // 11 // --- --- No cerevisiae_gene -1.59134940478025 -4.52938561890517 -1.39878919291441 -3.61492533535495 -1.06418840540049 Max fold change at or above threshold 4 4.52938561890517 Max fold change at or above threshold 0.935427097641162 -0.93008068306672 -0.796370812143874 0.791024397569432 1816.30307006836 1245.19872900182 0.685567705919783 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770434_at SPBP26C9.03c.S1 --- 4.52937793925687 --- --- --- --- 1.86805903911591 5.76483058929443 8.46114540100098 7.08658075332642 0.466064006090164 0.326416015625 0.0952147990465164 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP26C9.03c /DEF=metal permease (predicted) --- --- --- --- --- --- SPBP26C9.03c // |||iron ion transporter |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.51603036677714 3.08600021122606 4.1244449492882 4.52937793925687 3.79355288293258 Max fold change at or above threshold 3 4.52937793925687 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
RPTR-Sc-M10961-1_at AFFX-Sc-M10961-1 --- 4.52827683784717 --- --- --- --- 1.09260702133179 2.30416679382324 4.94762706756592 3.27231621742249 0.366210997104645 0.533936023712158 0.0952147990465164 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL M10961 /FEA=CDS_1 /DB_XREF=AAA88684.1 GI:1197014 /PROD=unknown protein /NOTE=ORF; putative --- --- --- --- --- --- AFFX-Sc-M10961-1 // --- // affx // --- // --- --- No No -4.41289199046641 2.10887057179504 1.34525149441621 4.52827683784717 2.99496173238374 Max fold change at or above threshold 2 4.52827683784717 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779839_at SPCC663.09c.S1 --- 4.52556716433513 --- --- --- --- 1.48248553276062 1.94037675857544 6.70908784866333 1.9859516620636 0.432372987270355 0.533936023712158 0.219482004642487 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC663.09c /DEF=short chain dehydrogenase (predicted) --- --- --- --- --- --- SPCC663.09c // |||short chain dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.98216434718909 1.30886724740049 1.61182615939704 4.52556716433513 1.33960947218517 Max fold change at or above threshold 1 4.52556716433513 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778943_at YBR192W.S1 Protein required for respiration, member of the mitochondrial carrier family 4.52438249517944 93.2829627990723 325.148788452148 RIM2 2 // mitochondrial genome maintenance // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay 5215 // transporter activity // inferred from sequence similarity 313.242034912109 69.2342071533203 117.331718444824 337.055541992188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR192W /GEN=RIM2 /DB_XREF=GI:6319669 /SEG=NC_001134:+607609,608742 /DEF=Protein of the mitochondrial carrier (MCF) family that is required for respiration /NOTE=Rim2p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 7891656]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 7891656]; go_process: mitochondrial genome maintenance [goid GO:0000002] [evidence IGI] [pmid 7891656] --- --- --- --- --- --- S0000396 // RIM2 SGDID:S0000396, Chr II from 607647-608780, Verified ORF // sgd // 10 // --- /// GENSCAN00000021293 // cdna:Genscan chromosome:SGD1:II:607647:608780:1 // ensembl // 10 // --- /// GENEFINDER00000022173 // cdna:GeneFinder chromosome:SGD1:II:607647:608780:1 // ensembl // 10 // --- /// YBR192W // cdna:known chromosome:SGD1:II:607647:608780:1 gene:YBR192W // ensembl // 10 // --- --- No cerevisiae_gene 1.55193970566959 -4.52438249517944 1.25015941151455 -2.6697131778515 1.07602270585032 Max fold change at or above threshold 4 4.52438249517944 Max fold change at or above threshold 0.766877211867404 -1.03193996939681 -0.677366796552804 0.942429554082206 209.21587562561 135.64904221523 0.648368780856631 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775521_at SPCC777.05.S1 --- 4.52403370937848 --- --- --- --- 0.80676931142807 3.64985156059265 3.4400897026062 0.488668709993362 0.953857004642487 0.59326171875 0.696289002895355 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC777.05 /GEN=gtr2 /DEF=GTPase --- --- --- --- --- --- SPCC777.05 // |gtr2||GTPase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.39599532850282 4.52403370937848 -1.11189988603623 4.2640314323767 -1.65095348838486 Max fold change at or above threshold 2 4.52403370937848 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778722_at SPAC17C9.13c.S1 --- 4.52352112050809 --- --- --- --- 10.7381362915039 12.4299869537354 8.23776817321777 3.95844984054565 0.129638999700546 0.0952147990465164 0.219482004642487 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17C9.13c /GEN=cut8 /DEF=essential (PMID 11084332) --- --- --- --- --- --- SPAC17C9.13c // |cut8||Cut8 protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.38353846737507 1.15755533514415 -4.52352112050809 -1.30352494337182 -2.71271248192037 Max fold change at or above threshold 4 4.52352112050809 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778901_at SPAC2F7.15.S1 --- 4.52335383493733 --- --- --- --- 1.81461107730865 3.3265426158905 8.20812797546387 5.13360500335693 0.601073980331421 0.35791015625 0.194580003619194 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F7.15 /GEN=rsm24 /DEF=mitochondrial ribosomal protein small subunit s24 --- --- --- --- --- --- SPAC2F7.15 // |rsm24||mitochondrial ribosomal protein small subunit S24|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.61223508034506 1.83319867132315 -1.07441618645048 4.52335383493733 2.82903872215464 Max fold change at or above threshold 3 4.52335383493733 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773758_at YDL194W.S1 Plasma membrane glucose sensor that regulates glucose transport; has 12 predicted transmembrane segments; long cytoplasmic C-terminal tail is required for low glucose induction of hexose transporter genes HXT2 and HXT4 4.5163859806131 484.630630493164 788.991729736328 SNF3 7165 // signal transduction // traceable author statement /// 9749 // response to glucose stimulus // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay 4872 // receptor activity // traceable author statement /// 5355 // glucose transporter activity // traceable author statement /// 5536 // glucose binding // traceable author statement 813.471435546875 451.701995849609 517.559265136719 764.512023925781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL194W /GEN=SNF3 /DB_XREF=GI:6320007 /SEG=NC_001136:+111581,114235 /DEF=glucose sensor /NOTE=Snf3p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 2406560]; go_function: glucose binding [goid GO:0005536] [evidence TAS] [pmid 10477308]; go_function: glucose transporter activity [goid GO:0005355] [evidence TAS] [pmid 10477308]; go_function: receptor activity [goid GO:0004872] [evidence TAS] [pmid 10477308]; go_process: response to glucose stimulus [goid GO:0009749] [evidence IMP] [pmid 8901598]; go_process: signal transduction [goid GO:0007165] [evidence TAS] [pmid 10477308] --- --- --- --- --- S0002353 // span:96-118,138-160,173-195,199-221,228-250,265-284,356-378,393-415,420-442,452-474,487-509,522-541 // numtm:12 S0002353 // SNF3 SGDID:S0002353, Chr IV from 111581-114235, Verified ORF // sgd // 11 // --- /// GENSCAN00000024958 // cdna:Genscan chromosome:SGD1:IV:111581:114235:1 // ensembl // 11 // --- /// GENEFINDER00000023769 // cdna:GeneFinder chromosome:SGD1:IV:111866:114235:1 // ensembl // 11 // --- /// YDL194W // cdna:known chromosome:SGD1:IV:111581:114235:1 gene:YDL194W // ensembl // 11 // --- --- No cerevisiae_gene -4.5163859806131 -1.80090290284596 -1.03643800886624 -1.57174547987657 -1.0640400805859 Max fold change at or above threshold 4 4.5163859806131 Max fold change at or above threshold 0.987546547902944 -1.03477681190378 -0.666628816307872 0.713859080308707 636.811180114746 178.88802893116 0.280912198964419 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774462_at YNL236W.S1 Subunit of the Mediator complex; interacts with the RNA polymerase II holoenzyme to postively or negatively regulate transcription; dispensible for basal transcription 4.51603968044742 180.686218261719 813.887512207031 SIN4 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from direct assay 750.7138671875 166.232788085938 195.1396484375 877.061157226563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL236W /GEN=SIN4 /DB_XREF=GI:6324093 /SEG=NC_001146:+206929,209853 /DEF=involved in positive and negative regualtion of transcription, possibly via changes in chromatin structure; regulation of YGP1 expression /NOTE=Sin4p; go_component: mediator complex [goid GO:0000119] [evidence IDA] [pmid 9420330]; go_function: RNA polymerase II transcription mediator activity [goid GO:0016455] [evidence IDA] [pmid 9420330]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IDA] [pmid 9420330] --- --- --- --- --- --- S0005180 // SIN4 SGDID:S0005180, Chr XIV from 206929-209853, Verified ORF // sgd // 11 // --- /// GENSCAN00000019851 // cdna:Genscan chromosome:SGD1:XIV:206932:209853:1 // ensembl // 11 // --- /// GENEFINDER00000020427 // cdna:GeneFinder chromosome:SGD1:XIV:207793:209853:1 // ensembl // 11 // --- /// YNL236W // cdna:known chromosome:SGD1:XIV:206929:209853:1 gene:YNL236W // ensembl // 11 // --- YNL235C // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene -3.52053506586104 -4.51603968044742 -1.54403476298167 -3.84705964778829 1.16830285886741 Max fold change at or above threshold 4 4.51603968044742 Max fold change at or above threshold 0.686071791958795 -0.896222037091786 -0.817966044918674 1.02811629005166 497.286865234375 369.388458938923 0.742807592082344 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775584_at SPAC24C9.14.S1 --- 4.51129592619231 --- --- --- --- 2.56436729431152 11.5686197280884 9.77909469604492 1.60491681098938 0.665526986122131 0.334473013877869 0.398925989866257 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24C9.14 /DEF=OTU-like cysteine protease (predicted) --- --- --- --- --- --- SPAC24C9.14 // |||OTU-like cysteine protease |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.10914548293115 4.51129592619231 1.57496930010182 3.81345321231388 -1.59781944880412 Max fold change at or above threshold 3 4.51129592619231 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772652_at SPBC17D11.02c.S1 --- 4.50824196064695 --- --- --- --- 1.10673379898071 0.74366420507431 4.98942375183105 0.852646827697754 0.850341975688934 0.9609375 0.633789002895355 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17D11.02c /DEF=zinc finger protein --- --- --- --- --- --- SPBC17D11.02c // |||synoviolin |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.5440465249943 -1.4882171165817 1.89861972633218 4.50824196064695 -1.29799790842948 Max fold change at or above threshold 1 4.50824196064695 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774077_at SPAC15E1.09.S1 --- 4.50527857705336 --- --- --- --- 1.14613676071167 0.625020921230316 0.726351678371429 0.504316449165344 0.805419981479645 0.753906011581421 0.601073980331421 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15E1.09 /GEN=grx2 /DEF=arsenate reductase (glutaredoxin) activity --- --- --- --- --- --- SPAC15E1.09 // |grx2||glutaredoxin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.69813405564805 -1.83375743400008 -4.50527857705336 -1.57793641130072 -2.27265393109535 Max fold change at or above threshold 0 4.50527857705336 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774526_at YNR019W.S1 Acyl-CoA:sterol acyltransferase, isozyme of Are1p; endoplasmic reticulum enzyme that contributes the major sterol esterification activity in the presence of oxygen 4.50497506691849 1369.94250488281 377.210632324219 ARE2 16125 // sterol metabolism // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay 4772 // sterol O-acyltransferase activity // inferred from direct assay 359.3603515625 1120.9755859375 1618.90942382813 395.060913085938 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR019W /GEN=ARE2 /DB_XREF=GI:6324346 /SEG=NC_001146:+665338,667266 /DEF=Acyl-CoA:sterol acyltransferase, isozyme of Are1p; endoplasmic reticulum enzyme that contributes the major sterol esterification activity in the presence of oxygen /NOTE=Are2p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 10672016]; go_function: sterol O-acyltransferase activity [goid GO:0004772] [evidence IDA] [pmid 10672016]; go_process: sterol metabolism [goid GO:0016125] [evidence IMP] [pmid 10672016] --- --- --- --- scop // a.2.8.Eukaryotic DNA topoisomerase I, dispensable insert domain // All alpha proteins; Long alpha-hairpin; Eukaryotic DNA topoisomerase I, dispensable insert domain; Eukaryotic DNA topoisomerase I, dispensable insert domain // 5.59999990463257 S0005302 // span:217-239,254-276,289-311,326-348,407-424,439-461,482-504,565-587,619-641 // numtm:9 S0005302 // ARE2 SGDID:S0005302, Chr XIV from 665339-667267, Verified ORF // sgd // 11 // --- /// GENSCAN00000020053 // cdna:Genscan chromosome:SGD1:XIV:665339:667267:1 // ensembl // 11 // --- /// GENEFINDER00000020675 // cdna:GeneFinder chromosome:SGD1:XIV:665339:667267:1 // ensembl // 11 // --- /// YNR019W // cdna:known chromosome:SGD1:XIV:665339:667267:1 gene:YNR019W // ensembl // 11 // --- --- No cerevisiae_gene 1.87766994578583 3.11936356101472 1.40598470386021 4.50497506691849 1.09934474231287 Max fold change at or above threshold 4 4.50497506691849 Max fold change at or above threshold -0.84531946155526 0.406698966682692 1.22525184344324 -0.786631348570668 873.576568603516 608.309923558291 0.696344139049797 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772742_at YLR048W.S1 Protein component of the small (40S) ribosomal subunit, nearly identical to Rps0Ap; required for maturation of 18S rRNA along with Rps0Ap; deletion of either RPS0 gene reduces growth rate, deletion of both genes is lethal 4.50414125714435 879.204315185547 2415.63330078125 RPS0B 28 // ribosomal small subunit assembly and maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 2445.998046875 543.055358886719 1215.35327148438 2385.2685546875 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR048W /GEN=RPS0B /DB_XREF=GI:6323077 /SEG=NC_001144:+242233,243350 /DEF=Protein component of the small (40S) ribosomal subunit, nearly identical to Rps0Ap; required for maturation of 18S rRNA along with Rps0Ap; deletion of either RPS0 gene reduces growth rate, deletion of both genes is lethal /NOTE=Rps0bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: ribosomal small subunit assembly and maintenance [goid GO:0000028] [evidence IMP] [pmid 8626693] --- --- --- --- --- --- S0004038 // RPS0B SGDID:S0004038, Chr XII from 242233-242322,242682-243350, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024769 // cdna:GeneFinder chromosome:SGD1:XII:242233:243350:1 // ensembl // 11 // --- /// YLR048W // cdna:known chromosome:SGD1:XII:242233:243350:1 gene:YLR048W // ensembl // 11 // --- --- No cerevisiae_gene 1.25721213541571 -4.50414125714435 -1.67356182675806 -2.01258194161733 -1.02546023258813 Max fold change at or above threshold 4 4.50414125714435 Max fold change at or above threshold 0.85972335936343 -1.18892028264268 -0.46514712180556 0.794344045084813 1647.4188079834 928.879307737896 0.563839203022658 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779348_at YPL209C.S1 Aurora kinase involved in regulating kinetochore-microtubule attachments, associates with Sli5p, which stimulates Ipl1p kinase activity and promotes its association with the mitotic spindle, potential Cdc28p substrate 4.50377034859683 23.7498455047607 95.4680557250977 IPL1 7059 // chromosome segregation // traceable author statement /// 8608 // attachment of spindle microtubules to kinetochore // inferred from mutant phenotype /// 51228 // mitotic spindle disassembly // inferred from mutant phenotype 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 5819 // spindle // inferred from direct assay /// 5828 // kinetochore microtubule // inferred from direct assay /// 5876 // spindle microtubule // inferred from direct assay /// 51233 // spindle midzone // inferred from direct assay 4672 // protein kinase activity // traceable author statement /// 4672 // protein kinase activity // inferred from direct assay 92.9769821166992 20.6442546844482 26.8554363250732 97.9591293334961 0.000244141003349796 0.0561522990465164 0.000732421991415322 0.000244141003349796 P M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL209C /GEN=IPL1 /DB_XREF=GI:6325047 /SEG=NC_001148:-156489,157592 /DEF=Aurora kinase involved in regulating kinetochore-microtubule attachments, associates with Sli5p, which stimulates Ipl1p kinase activity and promotes its association with the mitotic spindle, potential Cdc28p substrate /NOTE=Ipl1p; go_component: kinetochore microtubule [goid GO:0005828] [evidence IDA] [pmid 11724818]; go_component: spindle microtubule [goid GO:0005876] [evidence IDA] [pmid 11724818]; go_function: protein kinase activity [goid GO:0004672] [evidence TAS] [pmid 10385519]; go_process: chromosome segregation [goid GO:0007059] [evidence TAS] [pmid 11724818] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 3.0E-57 /// hanks // 2.1.8 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DdMLCK // 1.0E-71 --- --- S0006130 // IPL1 SGDID:S0006130, Chr XVI from 157592-156489, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017027 // cdna:Genscan chromosome:SGD1:XVI:156489:157592:-1 // ensembl // 11 // --- /// YPL209C // cdna:known chromosome:SGD1:XVI:156489:157592:-1 gene:YPL209C // ensembl // 11 // --- --- No cerevisiae_gene 1.25877386283827 -4.50377034859683 1.00090410192966 -3.46212889603631 1.05358473789291 Max fold change at or above threshold 4 4.50377034859683 Max fold change at or above threshold 0.80339211105044 -0.938141326028389 -0.788596563997258 0.923345778975207 59.6089506149292 41.5339297496227 0.696773375829576 PPMPPP Called_P_>2EXP 1 0 PMPP 0 3 1 Yes Yes 2 < x = 3
1779514_at YJL122W.S1 Hypothetical protein 4.50317857618786 44.6635093688965 201.090545654297 --- --- 5634 // nucleus // inferred from direct assay --- 193.490646362305 42.9675712585449 46.359447479248 208.690444946289 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL122W /GEN=LSM1 /DB_XREF=GI:6322339 /SEG=NC_001142:+189636,190163 /DEF=Hypothetical ORF /NOTE=Yjl122wp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003658 // YJL122W SGDID:S0003658, Chr X from 189636-190163, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000024043 // cdna:Genscan chromosome:SGD1:X:189636:190163:1 // ensembl // 10 // --- /// YJL122W // cdna:known chromosome:SGD1:X:189636:190163:1 gene:YJL122W // ensembl // 10 // --- --- No cerevisiae_gene 2.52501919664231 -4.50317857618786 -1.65866386329179 -4.1737047545469 1.07855572798865 Max fold change at or above threshold 4 4.50317857618786 Max fold change at or above threshold 0.779944617246885 -0.882619405237694 -0.845155306332097 0.947830094322906 122.877027511597 90.5367090037316 0.7368074475531 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780080_at YBR133C.S1 Protein arginine N-methyltransferase that exhibits septin and Hsl1p-dependent bud neck localization and periodic Hsl1p-dependent phosphorylation; required along with Hsl1p for bud neck recruitment, phosphorylation, and degradation of Swe1p 4.49986006985006 101.977970123291 459.440322875977 HSL7 74 // regulation of cell cycle // inferred from mutant phenotype /// 86 // G2/M transition of mitotic cell cycle // inferred from genetic interaction /// 86 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype 5935 // bud neck // inferred from direct assay 16274 // protein-arginine N-methyltransferase activity // inferred from direct assay /// 16274 // protein-arginine N-methyltransferase activity // inferred from sequence similarity /// 16274 // protein-arginine N-methyltransferase activity // inferred from mutant phenotype /// 16274 // protein-arginine N-methyltransferase activity // inferred from genetic interaction /// 16274 // protein-arginine N-methyltransferase activity // inferred from physical interaction 438.800109863281 97.5141677856445 106.441772460938 480.080535888672 0.000732421991415322 0.00195312988944352 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR133C /GEN=HSL7 /DB_XREF=GI:6319610 /SEG=NC_001134:-501760,504243 /DEF=Negative regulator of Swe1 kinase /NOTE=Hsl7p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 10805747]; go_function: protein-arginine N-methyltransferase activity [goid GO:0016274] [evidence IDA,IGI,IMP,IPI,ISS] [pmid 10903903]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence IGI,IMP] [pmid 10490630]; go_process: regulation of cell cycle [goid GO:0000074] [evidence IMP] [pmid 8647431] --- --- --- --- --- --- S0000337 // HSL7 SGDID:S0000337, Chr II from 504281-501798, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021248 // cdna:Genscan chromosome:SGD1:II:501798:504281:-1 // ensembl // 11 // --- /// GENEFINDER00000022301 // cdna:GeneFinder chromosome:SGD1:II:501798:504281:-1 // ensembl // 11 // --- /// YBR133C // cdna:known chromosome:SGD1:II:501798:504281:-1 gene:YBR133C // ensembl // 11 // --- --- No cerevisiae_gene -1.55322422042546 -4.49986006985006 -1.34279187784075 -4.12244271885189 1.09407569664979 Max fold change at or above threshold 4 4.49986006985006 Max fold change at or above threshold 0.763355715088782 -0.88457259669687 -0.841464895244876 0.962681776852965 280.709146499634 207.099993147049 0.737774296739274 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Sp-CC338.15-M_at AFFX-r2-Sp-CC338.15-M --- 4.49945794848653 --- --- --- --- 4.48282623291016 3.84748315811157 0.996303617954254 1.9041633605957 0.366210997104645 0.432372987270355 0.5 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=SPCC338.15 dolichyl-di-phosphooligosaccharide-protein glycotransferase (oligosaccharyltransferase) (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPCC338.15 // |||dolichyl-di-phosphooligosaccharide-protein glycotransferase subunit |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- AFFX_control No 1.01784884601573 -1.16513212629901 -1.23682735311704 -4.49945794848653 -2.35422355333407 Max fold change at or above threshold 2 4.49945794848653 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769831_at SPCC4G3.18.S1 --- 4.49930378720174 --- --- --- --- 0.937811374664307 0.410555392503738 2.3996593952179 0.208434775471687 0.696289002895355 0.753906011581421 0.665526986122131 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4G3.18 /DEF=sequence orphan --- --- --- --- --- --- SPCC4G3.18 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.21559459265696 -2.28425053424616 1.64835376738988 2.55878683074927 -4.49930378720174 Max fold change at or above threshold 0 4.49930378720174 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774954_at SPBC21D10.06c.S1 --- 4.49767533742956 --- --- --- --- 9.47223377227783 9.30386829376221 4.7306809425354 5.47149133682251 0.030273400247097 0.111571997404099 0.0805663987994194 0.0805663987994194 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21D10.06c /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPBC21D10.06c // |||glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.05862582338446 -1.01809628782348 -4.49767533742956 -2.00229816538868 -1.73119780132535 Max fold change at or above threshold 4 4.49767533742956 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1770054_at YPL067C.S1 Hypothetical protein 4.49738307479755 222.124069213867 110.234172821045 --- --- 5737 // cytoplasm // inferred from direct assay --- 97.9634094238281 138.683685302734 305.564453125 122.504936218262 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL067C /GEN=BTS1 /DB_XREF=GI:6325190 /SEG=NC_001148:-425246,425842 /DEF=Hypothetical ORF /NOTE=Ypl067cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005988 // YPL067C SGDID:S0005988, Chr XVI from 425844-425248, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017136 // cdna:Genscan chromosome:SGD1:XVI:425248:425844:-1 // ensembl // 11 // --- /// GENEFINDER00000021032 // cdna:GeneFinder chromosome:SGD1:XVI:425248:425844:-1 // ensembl // 11 // --- /// YPL067C // cdna:known chromosome:SGD1:XVI:425248:425844:-1 gene:YPL067C // ensembl // 11 // --- --- No cerevisiae_gene 4.49738307479755 1.41566821855632 -1.22333593715687 3.11916923800608 1.25051727924512 Max fold change at or above threshold 4 4.49738307479755 Max fold change at or above threshold -0.72247534242352 -0.291205264432556 1.47623565291109 -0.462555046055012 166.179121017456 94.4194321771599 0.568178671297953 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778919_at YER070W.S1 Ribonucleotide-diphosphate reductase (RNR), large subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits 4.49503480130836 86.8959579467773 117.225303649902 RNR1 6260 // DNA replication // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5971 // ribonucleoside-diphosphate reductase complex // inferred from direct assay 4748 // ribonucleoside-diphosphate reductase activity // inferred from mutant phenotype 109.385620117188 86.4107360839844 87.3811798095703 125.064987182617 0.000244141003349796 0.00805663969367743 0.018554700538516 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER070W /GEN=RNR1 /DB_XREF=GI:6320914 /SEG=NC_001137:+298948,301614 /DEF=Ribonucleotide-diphosphate reductase (RNR), large subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits /NOTE=Rnr1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12732713]; go_function: ribonucleoside-diphosphate reductase activity [goid GO:0004748] [evidence IMP] [pmid 8552025]; go_process: DNA replication [goid GO:0006260] [evidence TAS] [pmid 9759483] --- --- --- --- --- --- S0000872 // RNR1 SGDID:S0000872, Chr V from 298948-301614, Verified ORF // sgd // 11 // --- /// GENSCAN00000016864 // cdna:Genscan chromosome:SGD1:V:298948:301614:1 // ensembl // 11 // --- /// GENEFINDER00000019718 // cdna:GeneFinder chromosome:SGD1:V:298948:301614:1 // ensembl // 11 // --- /// YER070W // cdna:known chromosome:SGD1:V:298948:301614:1 gene:YER070W // ensembl // 11 // --- --- No cerevisiae_gene 4.49503480130836 -1.26587997133682 -1.11668854237381 -1.25182127725411 1.14334029508296 Max fold change at or above threshold 4 4.49503480130836 Max fold change at or above threshold 0.392799621316359 -0.839219342152815 -0.787179685666468 1.23359940650292 102.06063079834 18.6481577917514 0.182716466142542 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1778378_at SPBC530.07c.S1 --- 4.49478437125007 --- --- --- --- 0.944205462932587 4.24399995803833 0.586157262325287 0.674269914627075 0.904784977436066 0.850341975688934 0.943848013877869 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC530.07c /DEF=sequence orphan --- --- --- --- --- --- SPBC530.07c // |||TENA/THI domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.95835671917278 4.49478437125007 -1.61022367692128 -1.6108398268187 -1.40033752426105 Max fold change at or above threshold 1 4.49478437125007 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777890_at SPAC1F7.03.S1 --- 4.4947043567255 --- --- --- --- 1.20626497268677 3.13913440704346 5.42180442810059 0.520662546157837 0.753906011581421 0.780517995357513 0.366210997104645 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F7.03 /DEF=conserved fungal protein --- --- --- --- --- --- SPAC1F7.03 // |pkd2||TRP-like ion channel |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.86595300430364 2.60235891625994 -2.17094004991567 4.4947043567255 -2.31678844884897 Max fold change at or above threshold 2 4.4947043567255 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769672_at SPAC17C9.05c.S1 --- 4.49413444154276 --- --- --- --- 5.26836442947388 1.17227566242218 8.06788158416748 4.60226964950562 0.129638999700546 0.567627012729645 0.0952147990465164 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17C9.05c /GEN=pmc3 /DEF=RNA polymerase II holoenzyme component --- --- --- --- --- --- SPAC17C9.05c // |pmc3||RNA polymerase II holoenzyme component|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.34123746788729 -4.49413444154276 1.06963603676533 1.53138259362464 -1.14473180206636 Max fold change at or above threshold 3 4.49413444154276 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1771196_at YBR136W.S1 Genome integrity checkpoint protein and PI kinase superfamily member; signal transducer required for cell cycle arrest and transcriptional responses prompted by damaged or unreplicated DNA; monitors and participates in meiotic recombination 4.49391184364559 127.479919433594 508.605743408203 MEC1 76 // DNA replication checkpoint // inferred from mutant phenotype /// 77 // DNA damage checkpoint // traceable author statement /// 723 // telomere maintenance // inferred from direct assay /// 6139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolism // inferred from genetic interaction /// 6310 // DNA recombination // inferred from mutant phenotype /// 7131 // meiotic recombination // inferred from mutant phenotype 5634 // nucleus // inferred from curator /// 5739 // mitochondrion // inferred from direct assay 4672 // protein kinase activity // inferred from direct assay 476.689147949219 106.074432373047 148.885406494141 540.522338867188 0.000244141003349796 0.000244141003349796 0.000244140625 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR136W /GEN=MEC1 /DB_XREF=GI:6319612 /SEG=NC_001134:+505624,512730 /DEF=Central regulator of the Mec1p/Tel1p signaling network; required for mitotic growth, DNA repair and mitotic recombination, regulates phosphorylation of Rad53p, required for dmc1 arrest and meiotic recombination /NOTE=Mec1p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 12417725]; go_function: protein kinase activity [goid GO:0004672] [evidence IDA] [pmid 11095737]; go_process: DNA damage response, signal transduction resulting in cell cycle arrest [goid GO:0000077] [evidence TAS] [pmid 9610409]; go_process: DNA recombination [goid GO:0006310] [evidence IMP] [pmid 10511543]; go_process: DNA replication checkpoint [goid GO:0000076] [evidence IMP] [pmid 10511542]; go_process: meiotic recombination [goid GO:0007131] [evidence IMP] [pmid 10511543]; go_process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism [goid GO:0006139] [evidence IGI] [pmid 9744871] --- --- --- --- scop // a.4.3.ARID domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; ARID-like; ARID domain // 4.59999990463257 /// scop // a.4.5.Biotin repressor-like // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Biotin repressor-like // 4.69999980926514 --- S0000340 // MEC1 SGDID:S0000340, Chr II from 505662-512768, Verified ORF // sgd // 11 // --- /// GENSCAN00000021249 // cdna:Genscan chromosome:SGD1:II:505662:512768:1 // ensembl // 11 // --- /// YBR136W // cdna:known chromosome:SGD1:II:505662:512768:1 gene:YBR136W // ensembl // 11 // --- --- No cerevisiae_gene -2.42866015355608 -4.49391184364559 -1.08307658470541 -3.20171841669371 1.13390946949933 Max fold change at or above threshold 4 4.49391184364559 Max fold change at or above threshold 0.713757945913595 -0.953656740438597 -0.761047963759075 1.00094675828408 318.042831420898 222.269072360738 0.698865216888307 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771861_at SPAC458.04c.S1 --- 4.49360291660282 --- --- --- --- 0.978246033191681 4.39584922790527 2.66061639785767 2.88149452209473 0.633789002895355 0.171387001872063 0.194580003619194 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC458.04c /DEF=hypothetical protein --- --- --- --- --- --- SPAC458.04c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.48148850260186 4.49360291660282 1.81181770074722 2.71978245511202 2.94557240645628 Max fold change at or above threshold 3 4.49360291660282 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780046_at YBR158W.S1 Protein required for daughter cell separation, multiple mitotic checkpoints, and chromosome stability; contains 12 degenerate leucine-rich repeat motifs; expression is induced by the Mitotic Exit Network (MEN) 4.49201375679748 104.144191741943 108.333278656006 AMN1 1100 // negative regulation of exit from mitosis // inferred from mutant phenotype /// 1100 // negative regulation of exit from mitosis // inferred from genetic interaction /// 7093 // mitotic checkpoint // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5933 // bud // inferred from direct assay 5515 // protein binding // inferred from physical interaction 95.1811065673828 82.2051696777344 126.083213806152 121.485450744629 0.000732421991415322 0.000244140625 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR158W /GEN=AMN1 /DB_XREF=GI:6319634 /SEG=NC_001134:+556505,558154 /DEF=Involved in daughter cell separation and Chromosome STability /NOTE=Amn1p; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 12628189]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12628189]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12628189]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12628189]; go_process: mitotic checkpoint [goid GO:0007093] [evidence IMP] [pmid 12628189]; go_process: negative regulation of exit from mitosis [goid GO:0001100] [evidence IGI,IMP] [pmid 12628189] --- --- --- --- --- --- S0000362 // AMN1 SGDID:S0000362, Chr II from 556543-558192, Verified ORF // sgd // 11 // --- /// GENSCAN00000021266 // cdna:Genscan chromosome:SGD1:II:556543:558192:1 // ensembl // 11 // --- /// GENEFINDER00000022309 // cdna:GeneFinder chromosome:SGD1:II:556669:558192:1 // ensembl // 11 // --- /// YBR158W // cdna:known chromosome:SGD1:II:556543:558192:1 gene:YBR158W // ensembl // 11 // --- --- No cerevisiae_gene 4.49201375679748 -1.15784818571043 -1.23680967654886 1.32466640022611 1.27636098303421 Max fold change at or above threshold 4 4.49201375679748 Max fold change at or above threshold -0.525928192519203 -1.14309587484836 0.943852530509207 0.725171536858357 106.238735198975 21.024977913098 0.197903127081853 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774032_at SPBC1773.15.S1 --- 4.49190085543497 --- --- --- --- 1.06035351753235 0.82561069726944 2.40081739425659 4.76300287246704 0.828612983226776 0.932372987270355 0.725830018520355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1773.15 /DEF=membrane transporter --- --- --- --- --- --- SPBC1773.15 // |||membrane transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.03272418208657 -1.28432628239833 -1.47406011554984 2.26416695428499 4.49190085543497 Max fold change at or above threshold 1 4.49190085543497 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770914_at SPAC10F6.13c.S1 --- 4.49081467994137 --- --- --- --- 12.9227113723755 9.16421031951904 7.19919586181641 5.753258228302 0.030273400247097 0.171387001872063 0.0676269978284836 0.219482004642487 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC10F6.13c /DEF=aspartate aminotransferase (predicted) --- --- --- --- --- --- SPAC10F6.13c // |||aspartate aminotransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.8886352284968 -1.41012819673629 -4.49081467994137 -1.79502150245916 -2.24615528446208 Max fold change at or above threshold 4 4.49081467994137 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1772873_at YGR288W.S1 MAL-activator protein, part of complex locus MAL1; nonfunctional in genomic reference strain S288C 4.48636024721395 401.896942138672 110.657878875732 MAL13 5975 // carbohydrate metabolism // inferred from genetic interaction /// 6355 // regulation of transcription, DNA-dependent // inferred from sequence similarity 5634 // nucleus // inferred from sequence similarity 3700 // transcription factor activity // inferred from sequence similarity 110.663185119629 307.318969726563 496.474914550781 110.652572631836 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR288W /GEN=MAL13 /DB_XREF=GI:6321727 /SEG=NC_001139:+1070298,1071719 /DEF=Part of complex locus MAL1; nonfunctional in S288C, shows homology to both functional & nonfunctional MAL-activator proteins in other Sc strains & to other nonfunctional MAL-activator sequences from S288C (i.e. MAL33, YPR196W, & YFL052W) /NOTE=Mal13p; go_component: nucleus [goid GO:0005634] [evidence ISS] [pmid 10447589]; go_function: transcription factor activity [goid GO:0003700] [evidence ISS] [pmid 10447589]; go_process: carbohydrate metabolism [goid GO:0005975] [evidence IGI] [pmid 3025617]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence ISS] [pmid 10447589] --- --- --- --- --- --- S0003520 // MAL13 SGDID:S0003520, Chr VII from 1070299-1071720, Verified ORF // sgd // 11 // --- /// GENSCAN00000019564 // cdna:Genscan chromosome:SGD1:VII:1070299:1071720:1 // ensembl // 11 // --- /// GENEFINDER00000021418 // cdna:GeneFinder chromosome:SGD1:VII:1070299:1071720:1 // ensembl // 11 // --- /// YGR288W // cdna:known chromosome:SGD1:VII:1070299:1071720:1 gene:YGR288W // ensembl // 11 // --- --- No cerevisiae_gene 2.33626405521741 2.77706600794424 1.29554531606508 4.48636024721395 -1.00009590818849 Max fold change at or above threshold 4 4.48636024721395 Max fold change at or above threshold -0.786969119756261 0.275853068770814 1.29814252571616 -0.787026474730712 256.277410507202 185.031688959629 0.721997653220508 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775803_at SPAC1A6.08c.S1 --- 4.48602011475169 --- --- --- --- 0.982779085636139 3.26541566848755 2.14523720741272 0.459914535284042 0.533936023712158 0.366210997104645 0.633789002895355 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1A6.08c /DEF=hypothetical protein --- --- --- --- --- --- SPAC1A6.08c // |mcp2||meiosis-specific coiled-coil protein Mcp2|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.193707573317 3.32263447219564 4.48602011475169 2.18282749273621 -2.13687328892351 Max fold change at or above threshold 1 4.48602011475169 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776730_at SPAC21E11.04.S1 --- 4.48478580363464 --- --- --- --- 7.48719215393066 1.66946482658386 9.06095886230469 3.06442475318909 0.303710997104645 0.725830018520355 0.5 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC21E11.04 /GEN=ppr1 /DEF=L-azetidine-2-carboxylic acid acetyltransferase (PMID 12761200) --- --- --- --- --- --- SPAC21E11.04 // |ppr1||L-azetidine-2-carboxylic acid acetyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.05827065466463 -4.48478580363464 -1.6925359970758 1.21019451297878 -2.44326187031967 Max fold change at or above threshold 3 4.48478580363464 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774888_at YJL045W.S1 Similar to SDH1 4.48413166983288 140.618774414063 49.9522285461426 --- 45333 // cellular respiration // inferred from genetic interaction 5739 // mitochondrion // inferred from physical interaction /// 5739 // mitochondrion // inferred from direct assay 8177 // succinate dehydrogenase (ubiquinone) activity // inferred from genetic interaction /// 8177 // succinate dehydrogenase (ubiquinone) activity // inferred from sequence similarity 40.3632392883301 100.243469238281 180.994079589844 59.5412178039551 0.00195312988944352 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL045W /GEN=RTT101 /DB_XREF=GI:6322416 /SEG=NC_001142:+355940,357844 /DEF=Similar to SDH1 /NOTE=Yjl045wp; go_component: mitochondrion [goid GO:0005739] [evidence IPI] [pmid 9730279]; go_function: succinate dehydrogenase (ubiquinone) activity [goid GO:0008177] [evidence ISS,IGI] [pmid 9730279]; go_process: cellular respiration [goid GO:0045333] [evidence IGI] [pmid 9730279] --- --- --- --- --- --- S0003581 // YJL045W SGDID:S0003581, Chr X from 355940-357844, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024108 // cdna:Genscan chromosome:SGD1:X:355940:368289:1 // ensembl // 9 // --- /// GENEFINDER00000024431 // cdna:GeneFinder chromosome:SGD1:X:356234:357892:1 // ensembl // 11 // --- /// YJL045W // cdna:known chromosome:SGD1:X:355940:357844:1 gene:YJL045W // ensembl // 11 // --- --- No cerevisiae_gene -3.10030944548576 2.48353380466329 2.31152291077737 4.48413166983288 1.47513477247526 Max fold change at or above threshold 4 4.48413166983288 Max fold change at or above threshold -0.880791629883375 0.0795112278403134 1.37451363428316 -0.573233232240094 95.2855014801025 62.3555677964886 0.654407720250175 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770755_at SPAC1783.06c.S1 --- 4.483456391786 18.4313945770264 11.6140265464783 --- --- --- --- 14.159613609314 20.2663135528564 16.5964756011963 9.06843948364258 0.0676269978284836 0.149657994508743 0.129638999700546 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1783.06c /DEF=similar to S. cerevisiae YBR217W --- --- --- --- --- --- SPAC1783.06c // |apg12||autophagy protein Apg12|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No cerevisiae_gene -4.483456391786 1.43127588873792 -3.45696089873252 1.17209946959848 -1.56141678343388 Max fold change at or above threshold 4 4.483456391786 Max fold change at or above threshold -0.183775818686361 1.11649963521941 0.335095562238641 -1.26781937877169 15.0227105617523 4.69646637195153 0.31262443303066 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774044_at SPBPB2B2.10c.S1 --- 4.4832049551338 --- --- --- --- 1.3871111869812 6.21870374679565 1.46776592731476 1.54547417163849 0.725830018520355 0.398925989866257 0.780517995357513 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB2B2.10c /DEF=galactose-1-phosphate uridylyltransferase (predicted) --- --- --- --- --- --- SPBPB2B2.10c // |||galactose-1-phosphate uridylyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 4.12676560846179 4.4832049551338 3.69911443277599 1.05814583653462 1.11416747708735 Max fold change at or above threshold 1 4.4832049551338 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774025_at YDL205C.S1 Phorphobilinogen deaminase, catalyzes the conversion of 4-porphobilinogen to hydroxymethylbilane, the third step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus; expression is regulated by Hap2p-Hap3p 4.48278700733189 91.7912101745605 29.5963516235352 HEM3 6783 // heme biosynthesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4418 // hydroxymethylbilane synthase activity // inferred from mutant phenotype /// 4418 // hydroxymethylbilane synthase activity // inferred from expression pattern /// 4418 // hydroxymethylbilane synthase activity // inferred from sequence similarity 20.8989562988281 93.6855697631836 89.8968505859375 38.2937469482422 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL205C /GEN=HEM3 /DB_XREF=GI:6319996 /SEG=NC_001136:-92763,93746 /DEF=Phorphobilinogen deaminase, catalyzes the conversion of 4-porphobilinogen to hydroxymethylbilane, the third step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus; expression is regulated by Hap2p-Hap3p /NOTE=Hem3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: hydroxymethylbilane synthase activity [goid GO:0004418] [evidence IEP,ISS] [pmid 1508149]; go_function: hydroxymethylbilane synthase activity [goid GO:0004418] [evidence IMP] [pmid 323256]; go_process: heme biosynthesis [goid GO:0006783] [evidence IMP] [pmid 323256] --- --- --- --- --- --- S0002364 // HEM3 SGDID:S0002364, Chr IV from 93746-92763, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023736 // cdna:GeneFinder chromosome:SGD1:IV:92763:93746:-1 // ensembl // 11 // --- /// GENSCAN00000024950 // cdna:Genscan chromosome:SGD1:IV:92763:93746:-1 // ensembl // 11 // --- /// YDL205C // cdna:known chromosome:SGD1:IV:92763:93746:-1 gene:YDL205C // ensembl // 11 // --- --- No cerevisiae_gene 1.58267555419915 4.48278700733189 1.87562735738161 4.30149952469054 1.83232819862825 Max fold change at or above threshold 4 4.48278700733189 Max fold change at or above threshold -1.08621142023976 0.900520562620226 0.797106360403002 -0.611415502783471 60.6937808990479 36.6363526093621 0.603626138735688 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770127_at YGR071C.S1 Hypothetical protein 4.48210891797014 66.6872749328613 292.10920715332 --- --- 5634 // nucleus // inferred from direct assay --- 275.963684082031 61.5700531005859 71.8044967651367 308.254730224609 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR071C /GEN=ROM1 /DB_XREF=GI:6321508 /SEG=NC_001139:-631483,634065 /DEF=Hypothetical ORF /NOTE=Ygr071cp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003303 // YGR071C SGDID:S0003303, Chr VII from 634067-631485, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019394 // cdna:Genscan chromosome:SGD1:VII:631485:634067:-1 // ensembl // 11 // --- /// YGR071C // cdna:known chromosome:SGD1:VII:631485:634067:-1 gene:YGR071C // ensembl // 11 // --- --- No cerevisiae_gene -1.81873798649117 -4.48210891797014 -1.19313320010587 -3.84326464935299 1.11701194035727 Max fold change at or above threshold 4 4.48210891797014 Max fold change at or above threshold 0.737816275301074 -0.900276040965884 -0.822078925447939 0.984538691112749 179.398241043091 130.880066313983 0.729550443488161 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770421_at SPAC3G9.03.S1 --- 4.48099232110709 --- --- --- --- 3.12938451766968 3.91118788719177 11.4393491744995 14.0227479934692 0.274170011281967 0.5 0.030273400247097 0.00195312988944352 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G9.03 /GEN=rpl2301 /DEF=60S ribosomal protein L23 --- --- --- --- --- --- SPAC3G9.03 // |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.39823108904057 1.24982656017749 2.42806045290155 3.65546295442719 4.48099232110709 Max fold change at or above threshold 4 4.48099232110709 Max fold change at or above threshold APAAPP No 3 0 AAPP 2 2 0 No No 1 < x = 2
1780072_at SPAC8C9.11.S1 --- 4.48089967652681 --- --- --- --- 0.408965975046158 0.872882723808289 1.81207454204559 1.14360535144806 0.969726979732513 0.828612983226776 0.601073980331421 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8C9.11 /DEF=conserved protein (broad species distribution) --- --- --- --- --- --- SPAC8C9.11 // |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.48089967652681 2.13436514788246 -1.6396104159896 4.43086870941054 2.79633373245534 Max fold change at or above threshold 0 4.48089967652681 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778976_at SPAC139.05.S1 --- 4.4793630698898 --- --- --- --- 15.0176486968994 11.4760417938232 4.43969106674194 3.3526303768158 0.0239257998764515 0.398925989866257 0.334473013877869 0.5 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC139.05 /DEF=succinate semialdehyde dehydrogenase (predicted) --- --- --- --- --- --- SPAC139.05 // |||succinate-semialdehyde dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.63408298145922 -1.30860874914052 -2.17523919190206 -3.38258866915262 -4.4793630698898 Max fold change at or above threshold 4 4.4793630698898 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1773247_at SPBC2G2.06c.S1 --- 4.47130552208017 --- --- --- --- 3.14430618286133 4.49413347244263 1.73514747619629 4.16771268844604 0.533936023712158 0.567627012729645 0.533936023712158 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G2.06c /GEN=apl1 /DEF=adaptin (predicted) --- --- --- --- --- --- SPBC2G2.06c // |apl1||adaptin |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.47130552208017 1.42929257237695 -1.11724881912324 -1.81212618869385 1.32547927780157 Max fold change at or above threshold 3 4.47130552208017 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774483_at SPBC29A3.08.S1 --- 4.4708238683575 --- --- --- --- 6.88237285614014 2.07125377655029 4.9954309463501 3.01708006858826 0.398925989866257 0.533936023712158 0.24609400331974 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A3.08 /GEN=pof4 /DEF=F-box protein --- --- --- --- --- --- SPBC29A3.08 // |pof4||F-box protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.4708238683575 -3.3228052178149 -2.41420147837283 -1.37773355893724 -2.28113696013395 Max fold change at or above threshold 3 4.4708238683575 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774027_at YPL190C.S1 Single stranded DNA binding protein; acidic ribonucleoprotein; required for termination of non-poly(A) transcripts and efficient splicing; interacts with Nrd1p 4.46889987368212 1043.80236816406 325.203063964844 NAB3 6357 // regulation of transcription from RNA polymerase II promoter // inferred from physical interaction /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction 5634 // nucleus // inferred from direct assay 8143 // poly(A) binding // inferred from direct assay 290.250427246094 790.504638671875 1297.10009765625 360.155700683594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL190C /GEN=NAB3 /DB_XREF=GI:6325066 /SEG=NC_001148:-185316,187724 /DEF=May be required for packaging pre-mRNAs into ribonucleoprotein structures amenable to efficient nuclear RNA processing /NOTE=Nab3p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 7962083]; go_function: poly(A) binding [goid GO:0008143] [evidence IDA] [pmid 7962083]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IGI,IPI] [pmid 10655211] --- --- --- --- --- --- S0006111 // NAB3 SGDID:S0006111, Chr XVI from 187724-185316, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017042 // cdna:Genscan chromosome:SGD1:XVI:185316:187058:-1 // ensembl // 11 // --- /// GENEFINDER00000020989 // cdna:GeneFinder chromosome:SGD1:XVI:185316:187724:-1 // ensembl // 11 // --- /// YPL190C // cdna:known chromosome:SGD1:XVI:185316:187724:-1 gene:YPL190C // ensembl // 11 // --- --- No cerevisiae_gene 2.76078312458745 2.72352618451663 1.11297396278764 4.46889987368212 1.24084468746787 Max fold change at or above threshold 4 4.46889987368212 Max fold change at or above threshold -0.848854209500357 0.228229945069252 1.31896727258487 -0.698343008153763 684.502716064453 464.45229864669 0.678525136199689 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769876_at YOR338W.S1 Hypothetical protein 4.4686971843926 418.089401245117 123.08016204834 --- --- --- --- 118.334426879883 307.378082275391 528.800720214844 127.825897216797 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR338W /GEN=TEA1 /DB_XREF=GI:6324914 /SEG=NC_001147:+956893,957984 /DEF=Hypothetical ORF /NOTE=Yor338wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005865 // YOR338W SGDID:S0005865, Chr XV from 956893-957984, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017789 // cdna:Genscan chromosome:SGD1:XV:956893:957984:1 // ensembl // 11 // --- /// YOR338W // cdna:known chromosome:SGD1:XV:956893:957984:1 gene:YOR338W // ensembl // 11 // --- --- No cerevisiae_gene 2.17307097914745 2.59753725420413 1.37123078619217 4.4686971843926 1.0802088672517 Max fold change at or above threshold 4 4.4686971843926 Max fold change at or above threshold -0.789418498660062 0.190773362646717 1.33885033546686 -0.740205199453519 270.584781646729 192.863930887446 0.712767102841897 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776786_at SPCPJ732.02c.S1 --- 4.46745577124319 --- --- --- --- 1.99935877323151 3.16803479194641 8.93204689025879 4.25359582901001 0.398925989866257 0.398925989866257 0.111571997404099 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCPJ732.02c /DEF=xylulose kinase (predicted) --- --- --- --- --- --- SPCPJ732.02c // |||xylulose kinase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.83538547387504 1.58452541602926 2.99902342241938 4.46745577124319 2.12748001307191 Max fold change at or above threshold 3 4.46745577124319 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771494_at SPAC6F12.03c.S1 --- 4.46707279445169 --- --- --- --- 2.23241305351257 1.5948498249054 1.89669060707092 0.499748528003693 0.665526986122131 0.805419981479645 0.432372987270355 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F12.03c /GEN=fsv1 /DEF=SNARE (PMID 14575697) --- --- --- --- --- --- D89211 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1166. // gb // 11 // --- /// SPAC6F12.03c // |fsv1||SNARE |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.27961132573476 -1.39976380136293 -3.67197149927813 -1.17700432805966 -4.46707279445169 Max fold change at or above threshold 0 4.46707279445169 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776532_at SPBC32F12.07c.S1 --- 4.46679841923115 --- --- --- --- 7.31869840621948 1.63846623897552 10.3467798233032 3.31716918945313 0.24609400331974 0.753906011581421 0.149657994508743 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32F12.07c /DEF=zinc finger protein --- --- --- --- --- --- SPBC32F12.07c // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.42987380060148 -4.46679841923115 -1.26927001536429 1.41374589428503 -2.20630844802524 Max fold change at or above threshold 3 4.46679841923115 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774518_at SPAC922.03.S1 --- 4.46637373317245 --- --- --- --- 2.54739856719971 11.3776340484619 6.23777484893799 3.11447668075562 0.466064006090164 0.219482004642487 0.533936023712158 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC922.03 /DEF=1-aminocyclopropane-1-carboxylate deaminase (predicted) --- --- --- --- --- --- SPAC922.03 // |||1-aminocyclopropane-1-carboxylate deaminase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.95400842735954 4.46637373317245 2.93160675531543 2.44868428884885 1.22261067461433 Max fold change at or above threshold 4 4.46637373317245 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772217_at SPMIT.08.S1 --- 4.4656640291214 --- --- --- --- 0.44656640291214 0.627461433410645 0.300950199365616 1.69037246704102 0.828612983226776 0.533936023712158 0.753906011581421 0.39013671875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPMIT.08 /GEN=rps3 /DEF=ribosomal small subunit --- --- --- --- --- --- SPMIT.08 // |||ribosomal small subunit|Schizosaccharomyces pombe|chr mitochondrial|||Manual // sanger // 11 // --- --- No No -2.13507789738682 1.40507980295619 -4.4656640291214 -1.48385481668885 3.78526565370299 Max fold change at or above threshold 0 4.4656640291214 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779419_at SPBC17A3.01c.S1 --- 4.46522522660228 --- --- --- --- 0.288560777902603 0.473083645105362 1.28848886489868 0.290621012449265 0.998046875 0.994140982627869 0.850341975688934 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17A3.01c /GEN=tim50 /DEF=TIM23 translocase complex --- --- --- --- --- --- SPBC17A3.01c // |tim50|SPBC8D2.21c|TIM23 translocase complex|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.13368871012868 1.63945927975368 1.00033865245242 4.46522522660228 1.00713969016038 Max fold change at or above threshold 0 4.46522522660228 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775339_at SPBC1685.12c.S1 --- 4.46414027326183 --- --- --- --- 2.30266165733337 1.21722555160522 10.2794046401978 8.35961246490479 0.5 0.850341975688934 0.303710997104645 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1685.12c /DEF=dubious --- --- --- --- --- --- SPBC1685.12c // |||dubious|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.80735100851276 -1.89172964229737 -3.21130626461649 4.46414027326183 3.6304128477936 Max fold change at or above threshold 2 4.46414027326183 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775738_at YBR184W.S1 Hypothetical protein 4.46022931366477 38.8055028915405 92.1031951904297 --- --- --- --- 94.568000793457 56.4085083007813 21.2024974822998 89.6383895874023 0.000244141003349796 0.000732421991415322 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR184W /GEN=YPC1 /DB_XREF=GI:6319661 /SEG=NC_001134:+597320,598891 /DEF=Hypothetical ORF /NOTE=Ybr184wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000388 // YBR184W SGDID:S0000388, Chr II from 597358-598929, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022246 // cdna:GeneFinder chromosome:SGD1:II:597358:598929:1 // ensembl // 11 // --- /// YBR184W // cdna:known chromosome:SGD1:II:597358:598929:1 gene:YBR184W // ensembl // 11 // --- --- No cerevisiae_gene 1.35802269536709 -1.67648469428055 -1.18730122391898 -4.46022931366477 -1.05499441956449 Max fold change at or above threshold 4 4.46022931366477 Max fold change at or above threshold 0.855725647237921 -0.265880693635928 -1.30067655677434 0.710831603172347 65.4543490409851 34.0221797096346 0.519784860870454 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773719_at YOR206W.S1 Protein that forms a nucleolar complex with Mak21p that binds to 90S and 66S pre-ribosomes, as well as a nuclear complex with Noc3p that binds to 66S pre-ribosomes; both complexes mediate intranuclear transport of ribosomal precursors 4.45634811555986 506.917526245117 254.800888061523 NOC2 54 // ribosome-nucleus export // traceable author statement /// 42255 // ribosome assembly // traceable author statement 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 30690 // Noc1p-Noc2p complex // inferred from physical interaction /// 30691 // Noc2p-Noc3p complex // inferred from physical interaction --- 224.930358886719 439.543365478516 574.291687011719 284.671417236328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR206W /GEN=NOC2 /DB_XREF=GI:6324780 /SEG=NC_001147:+727512,729644 /DEF=Protein that forms a nucleolar complex with Mak21p that binds to 90S and 66S pre-ribosomes, as well as a nuclear complex with Noc3p that binds to 66S pre-ribosomes; both complexes mediate intranuclear transport of ribosomal precursors /NOTE=Noc2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10684247]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ribosome assembly [goid GO:0042255] [evidence TAS] [pmid 12446671]; go_process: ribosome-nucleus export [goid GO:0000054] [evidence TAS] [pmid 12446671] --- --- --- --- --- --- S0005732 // NOC2 SGDID:S0005732, Chr XV from 727512-729644, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022933 // cdna:GeneFinder chromosome:SGD1:XV:727512:729644:1 // ensembl // 11 // --- /// GENSCAN00000017622 // cdna:Genscan chromosome:SGD1:XV:727839:729644:1 // ensembl // 11 // --- /// YOR206W // cdna:known chromosome:SGD1:XV:727512:729644:1 gene:YOR206W // ensembl // 11 // --- --- No cerevisiae_gene 4.45634811555986 1.95413090368954 1.0131912031149 2.55319775353645 1.26559802174013 Max fold change at or above threshold 4 4.45634811555986 Max fold change at or above threshold -0.989977200649784 0.372580054474174 1.22808413615391 -0.610686989978297 380.85920715332 157.50751448039 0.413558374123756 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771621_at SPAC1B3.16c.S1 --- 4.45525373229392 --- --- --- --- 6.03717374801636 3.52848482131958 5.03954219818115 1.35506844520569 0.111571997404099 0.334473013877869 0.0561522990465164 0.334473013877869 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B3.16c /GEN=vht1 /DEF=vitamin H transporter (PMID 12557275) --- --- --- --- --- --- AY179181 // Schizosaccharomyces pombe vitamin H transporter Vht1p (vht1) mRNA, complete cds. // gb // 11 // --- /// SPAC1B3.16c // |vht1||vitamin H transporter Vth1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.30346325716765 -1.71098192389519 -2.22471463320476 -1.19796074933062 -4.45525373229392 Max fold change at or above threshold 3 4.45525373229392 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1776183_at YDR216W.S1 Carbon source-responsive zinc-finger transcription factor, required for transcription of the glucose-repressed gene ADH2, of peroxisomal protein genes, and of genes required for ethanol, glycerol, and fatty acid utilization 4.4532594061548 2465.39685058594 631.929534912109 ADR1 6109 // regulation of carbohydrate metabolism // inferred from genetic interaction /// 6109 // regulation of carbohydrate metabolism // traceable author statement /// 6109 // regulation of carbohydrate metabolism // inferred from physical interaction /// 6350 // transcription // inferred from genetic interaction /// 6350 // transcription // inferred from physical interaction /// 6350 // transcription // traceable author statement /// 7031 // peroxisome organization and biogenesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5634 // nucleus // inferred from physical interaction /// 5634 // nucleus // inferred from sequence similarity 3700 // transcription factor activity // inferred from physical interaction /// 3700 // transcription factor activity // traceable author statement 595.827575683594 2653.37475585938 2277.4189453125 668.031494140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR216W /GEN=ADR1 /DB_XREF=GI:6320422 /SEG=NC_001136:+895027,898998 /DEF=Controls the expression of ADH2, peroxisomal protein genes, and genes required for ethanol, glycerol, and fatty acid utilization. /NOTE=Adr1p; go_component: nucleus [goid GO:0005634] [evidence IDA,IPI,ISS] [pmid 10608811]; go_function: transcription factor activity [goid GO:0003700] [evidence IPI,TAS] [pmid 12167649]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence IMP] [pmid 11431484]; go_process: regulation of carbohydrate metabolism [goid GO:0006109] [evidence IGI,IPI,TAS] [pmid 12167649]; go_process: transcription [goid GO:0006350] [evidence IGI,IPI,TAS] [pmid 12167649] --- --- --- --- --- --- S0002624 // ADR1 SGDID:S0002624, Chr IV from 895029-899000, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023632 // cdna:GeneFinder chromosome:SGD1:IV:895029:899000:1 // ensembl // 11 // --- /// GENSCAN00000025265 // cdna:Genscan chromosome:SGD1:IV:895029:899000:1 // ensembl // 11 // --- /// YDR216W // cdna:known chromosome:SGD1:IV:895029:899000:1 gene:YDR216W // ensembl // 11 // --- --- No cerevisiae_gene -1.21267053033565 4.4532594061548 1.68665357718813 3.82227852193584 1.12118257261623 Max fold change at or above threshold 4 4.4532594061548 Max fold change at or above threshold -0.890477180646644 1.03241358795544 0.681062248618889 -0.822998655927681 1548.66319274902 1070.02811276253 0.690936620546352 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777250_at SPAC6F12.09.S1 --- 4.45160735982025 --- --- --- --- 0.76515120267868 0.283062398433685 0.310418158769608 3.40615272521973 0.5 0.904784977436066 0.665526986122131 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F12.09 /GEN=rdr1 /DEF=RNA-directed RNA polymerase --- --- --- --- --- --- SPAC6F12.09 // |rdp1|rdr1|RNA-directed RNA polymerase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.6812519768003 -2.70311848875942 -1.69553841481225 -2.46490477783736 4.45160735982025 Max fold change at or above threshold 1 4.45160735982025 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772376_at YPL051W.S1 GTPase of the Ras superfamily required to recruit Arl1p to the Golgi; similar to ADP-ribosylation factor 4.45058733472906 145.738925933838 600.866668701172 ARL3 6886 // intracellular protein transport // inferred from mutant phenotype 5625 // soluble fraction // inferred from direct assay /// 5794 // Golgi apparatus // inferred from direct assay /// 42175 // nuclear envelope-endoplasmic reticulum network // inferred from direct assay 3924 // GTPase activity // inferred from sequence similarity /// 3924 // GTPase activity // inferred from direct assay 564.1025390625 164.729965209961 126.747886657715 637.630798339844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL051W /GEN=ARL3 /DB_XREF=GI:6325206 /SEG=NC_001148:+459958,460554 /DEF=Similar to ADP-ribosylation factor. Part of the carboxypeptidase Y pathway. /NOTE=Arl3p; go_component: nuclear envelope-endoplasmic reticulum network [goid GO:0042175] [evidence IDA] [pmid 9920936]; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 9920936]; go_function: GTPase activity [goid GO:0003924] [evidence IDA,ISS] [pmid 9920936]; go_process: intracellular protein transport [goid GO:0006886] [evidence IMP] [pmid 9920936] --- --- --- --- --- --- S0005972 // ARL3 SGDID:S0005972, Chr XVI from 459960-460556, Verified ORF // sgd // 11 // --- /// GENSCAN00000017150 // cdna:Genscan chromosome:SGD1:XVI:459960:460556:1 // ensembl // 11 // --- /// YPL051W // cdna:known chromosome:SGD1:XVI:459960:460556:1 gene:YPL051W // ensembl // 11 // --- --- No cerevisiae_gene 1.45650639843778 -3.42440756509302 1.2344767338191 -4.45058733472906 1.13034555632304 Max fold change at or above threshold 4 4.45058733472906 Max fold change at or above threshold 0.72018572562456 -0.787271382357 -0.93063714665367 0.997722803386111 373.302797317505 264.93130168545 0.709695463278617 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779705_at YNL168C.S1 The authentic, non-tagged protein was localized to mitochondria 4.44831592803622 812.802581787109 235.862213134766 --- --- 5739 // mitochondrion // inferred from direct assay --- 223.895492553711 629.647277832031 995.957885742188 247.82893371582 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL168C /GEN=PSD1 /DB_XREF=GI:6324161 /SEG=NC_001146:-318030,318809 /DEF=The authentic, non-tagged protein was localized to mitochondria /NOTE=Ynl168cp --- --- --- --- --- --- S0005112 // FMP41 SGDID:S0005112, Chr XIV from 318809-318030, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019904 // cdna:Genscan chromosome:SGD1:XIV:318030:318500:-1 // ensembl // 10 // --- /// GENEFINDER00000020474 // cdna:GeneFinder chromosome:SGD1:XIV:318030:318809:-1 // ensembl // 11 // --- /// YNL168C // cdna:known chromosome:SGD1:XIV:318030:318809:-1 gene:YNL168C // ensembl // 11 // --- --- No cerevisiae_gene 1.83828206701803 2.81223739991542 1.78297407895952 4.44831592803622 1.10689559172956 Max fold change at or above threshold 4 4.44831592803622 Max fold change at or above threshold -0.822535348186972 0.288330795519466 1.29121499017259 -0.757010437505086 524.332397460938 365.257135233699 0.696613707263646 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774382_at SPBP23A10.03c.S1 --- 4.44798568983233 --- --- --- --- 0.241214796900749 0.385729879140854 0.317053735256195 0.264802545309067 0.932372987270355 0.870360970497131 0.828612983226776 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP23A10.03c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBP23A10.03c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- SPBP23A10.02 // sanger // 1 // Negative Strand Matching Probes No No 4.44798568983233 1.59911367004391 1.82676646537537 1.31440417142673 1.09778731948199 Max fold change at or above threshold 0 4.44798568983233 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772568_at SPAC23H4.17c.S1 --- 4.44629492456358 --- --- --- --- 4.87509965896606 10.6471662521362 3.98024439811707 3.71318578720093 0.533936023712158 0.030273400247097 0.432372987270355 0.149657994508743 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H4.17c /GEN=srb10 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPAC23H4.17c // |srb10||cyclin-dependent protein kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -4.44629492456358 2.18398945600106 1.16175159492656 -1.22482419955728 -1.31291563049987 Max fold change at or above threshold 4 4.44629492456358 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1777265_at SPAC23H4.08.S1 --- 4.44386987093836 --- --- --- --- 2.32710075378418 1.26316654682159 1.82658720016479 0.523665368556976 0.601073980331421 0.696289002895355 0.870360970497131 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H4.08 /DEF=sequence orphan --- --- --- --- --- --- SPAC23H4.08 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.74153673108312 -1.84227547795631 -1.55508785257096 -1.27401569088748 -4.44386987093836 Max fold change at or above threshold 0 4.44386987093836 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771498_at YGL156W.S1 Vacuolar alpha mannosidase, involved in free oligosaccharide (fOS) degradation; delivered to the vacuole in a novel pathway separate from the secretory pathway 4.44336948687985 2215.08654785156 2709.271484375 AMS1 5975 // carbohydrate metabolism // inferred from sequence similarity /// 9313 // oligosaccharide catabolism // inferred from mutant phenotype 5774 // vacuolar membrane // inferred from direct assay 4559 // alpha-mannosidase activity // inferred from sequence similarity 2827.89794921875 2218.21728515625 2211.95581054688 2590.64501953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL156W /GEN=AMS1 /DB_XREF=GI:6321282 /SEG=NC_001139:+210419,213670 /DEF=vacuolar alpha mannosidase /NOTE=Ams1p; go_component: vacuolar membrane [goid GO:0005774] [evidence IDA] [pmid 2266133]; go_function: alpha-mannosidase activity [goid GO:0004559] [evidence ISS] [pmid 2675832]; go_process: carbohydrate metabolism [goid GO:0005975] [evidence ISS] [pmid 2675832] --- --- --- --- --- --- S0003124 // AMS1 SGDID:S0003124, Chr VII from 210421-213672, Verified ORF // sgd // 11 // --- /// GENSCAN00000019232 // cdna:Genscan chromosome:SGD1:VII:210421:213672:1 // ensembl // 11 // --- /// GENEFINDER00000021697 // cdna:GeneFinder chromosome:SGD1:VII:211675:213672:1 // ensembl // 11 // --- /// YGL156W // cdna:known chromosome:SGD1:VII:210421:213672:1 gene:YGL156W // ensembl // 11 // --- --- No cerevisiae_gene -4.44336948687985 -1.27485164241679 1.1385077531259 -1.27846041757932 -1.09158064030341 Max fold change at or above threshold 4 4.44336948687985 Max fold change at or above threshold 1.21371915746427 -0.809640955791863 -0.830421043994687 0.426342842322283 2462.17901611328 301.32088700778 0.122379764036587 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776837_at YML058W-A.S1 Protein involved in the Mec1p-mediated checkpoint pathway that responds to DNA damage or replication arrest, transcription is induced by DNA damage 4.44168657294365 48.486291885376 239.850997924805 HUG1 75 // cell cycle checkpoint // inferred from mutant phenotype /// 75 // cell cycle checkpoint // inferred from expression pattern /// 6974 // response to DNA damage stimulus // inferred from mutant phenotype /// 6974 // response to DNA damage stimulus // inferred from expression pattern /// 7050 // cell cycle arrest // inferred from mutant phenotype /// 7050 // cell cycle arrest // inferred from expression pattern 5737 // cytoplasm // inferred from direct assay --- 215.020538330078 48.4096603393555 48.5629234313965 264.681457519531 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML058W-A /GEN=HUG1 /DB_XREF=GI:15530185 /SEG=NC_001145:+158760,158966 /DEF=Protein involved in the Mec1p-mediated checkpoint pathway that responds to DNA damage or replication arrest, transcription is induced by DNA damage /NOTE=Hug1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell cycle arrest [goid GO:0007050] [evidence IEP,IMP] [pmid 10490641]; go_process: cell cycle checkpoint [goid GO:0000075] [evidence IEP,IMP] [pmid 10490641]; go_process: response to DNA damage stimulus [goid GO:0006974] [evidence IEP,IMP] [pmid 10490641] --- --- --- --- --- --- S0007472 // HUG1 SGDID:S0007472, Chr XIII from 158760-158966, Verified ORF // sgd // 11 // --- /// YML058W-A // cdna:known chromosome:SGD1:XIII:158760:158966:1 gene:YML058W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.13761020228667 -4.44168657294365 -1.65939308611434 -4.42766874679264 1.23095895664264 Max fold change at or above threshold 4 4.44168657294365 Max fold change at or above threshold 0.630752077043994 -0.852485028849763 -0.851120619107609 1.07285357091338 144.16864490509 112.329227288531 0.779151578781087 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777573_at SPAPB2C8.01.S1 --- 4.44122126770323 --- --- --- --- 9.68352508544922 2.18037438392639 3.65779519081116 5.5411319732666 0.0805663987994194 0.633789002895355 0.219482004642487 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB2C8.01 /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPAPB2C8.01 // |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.6343250508196 -4.44122126770323 -2.16689319582384 -2.6473666731739 -1.74757163918271 Max fold change at or above threshold 3 4.44122126770323 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779849_at SPBC36.04.S1 --- 4.44060999415821 --- --- --- --- 1.34763288497925 1.54507768154144 1.00492203235626 0.945189893245697 0.753906011581421 0.805419981479645 0.805419981479645 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC36.04 /GEN=cys11 /DEF=cysteine synthase (PMID 14981292) --- --- --- --- --- --- SPBC36.04 // |cys11|cys1a|cysteine synthase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.12913081480799 1.14651230224709 4.44060999415821 -1.34103228070284 -1.42578004124822 Max fold change at or above threshold 0 4.44060999415821 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772251_at YJL189W.S1 Protein component of the large (60S) ribosomal subunit, has similarity to rat L39 ribosomal protein; required for ribosome biogenesis; exhibits genetic interactions with SIS1 and PAB1 4.44018748431266 1041.54766845703 3228.80541992188 RPL39 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3668.89624023438 1256.80224609375 826.293090820313 2788.71459960938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL189W /GEN=RPL39 /DB_XREF=GI:6322272 /SEG=NC_001142:+75932,76473 /DEF=Protein component of the large (60S) ribosomal subunit, has similarity to rat L39 ribosomal protein; required for ribosome biogenesis; exhibits genetic interactions with SIS1 and PAB1 /NOTE=Rpl39p; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0003725 // RPL39 SGDID:S0003725, Chr X from 75932-75937,76324-76473, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024400 // cdna:GeneFinder chromosome:SGD1:X:76354:76473:1 // ensembl // 9 // --- /// YJL189W // cdna:known chromosome:SGD1:X:75932:76473:1 gene:YJL189W // ensembl // 11 // --- YJL188C // ensembl // 10 // Negative Strand Matching Probes No cerevisiae_gene -1.12742444887278 -2.9192311293504 -1.90366005963142 -4.44018748431266 -1.31562270328713 Max fold change at or above threshold 4 4.44018748431266 Max fold change at or above threshold 1.1578265633251 -0.663097107965588 -0.988094522431626 0.49336506707211 2135.17654418945 1324.65409295872 0.620395581135224 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771661_at SPCC553.12c.S1 --- 4.43953168712393 --- --- --- --- 1.39889848232269 1.07593238353729 0.792576730251312 0.414775371551514 0.888427972793579 0.943848013877869 0.932372987270355 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC553.12c /DEF=low similarity to NADH dehydrogenase subunit 2 by multiple alignment --- --- --- --- --- --- SPCC553.12c // ||SPCC794.13|conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.43953168712393 -1.30017322996042 -2.12025250472977 -1.76500069826568 -3.37266525032563 Max fold change at or above threshold 0 4.43953168712393 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775498_at YDR182W-A.S1 Identified by fungal homology and RT-PCR 4.43712326987398 60.5176391601563 296.352172851563 --- --- --- --- 263.300689697266 59.340404510498 61.6948738098145 329.403656005859 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR182W-A /GEN=CDC1 /DB_XREF=GI:33438781 /SEG=NC_001136:+829144,829347 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ydr182w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028539 // span:12-34 // numtm:1 S0028539 // YDR182W-A SGDID:S0028539, Chr IV from 829146-829349, Uncharacterized ORF // sgd // 11 // --- /// YDR182W-A // cdna:known chromosome:SGD1:IV:829146:829349:1 gene:YDR182W-A // ensembl // 11 // --- --- No cerevisiae_gene -3.12258230999091 -4.43712326987398 -1.81642555098809 -4.26778877138054 1.25105504427124 Max fold change at or above threshold 4 4.43712326987398 Max fold change at or above threshold 0.611376402263037 -0.85796141491258 -0.840999726622643 1.08758473927219 178.434906005859 138.811022763181 0.777936480425097 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776073_at SPAC13G6.12c.S1 --- 4.43700059970903 --- --- --- --- 4.75034713745117 1.07883250713348 4.8002781867981 4.94520092010498 0.274170011281967 0.725830018520355 0.171387001872063 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G6.12c /GEN=chs1 /DEF=chitin synthase 1 --- --- --- --- --- --- SPAC13G6.12c // |chs1|SPAC24B11.01c|chitin synthase I|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -4.43700059970903 -4.40322951527768 -1.36750808638574 1.01051103169983 1.04101885125775 Max fold change at or above threshold 3 4.43700059970903 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775284_at SPAC15F9.01c.S1 --- 4.43557050398714 --- --- --- --- 0.732467532157898 3.24891138076782 0.669456422328949 0.985754728317261 0.888427972793579 0.601073980331421 0.932372987270355 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15F9.01c /DEF=hypothetical protein --- --- --- --- --- --- SPAC15F9.01c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.14782553952517 4.43557050398714 1.90972877179043 -1.09412279534154 1.34579989561198 Max fold change at or above threshold 1 4.43557050398714 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770823_at SPAC29E6.08.S1 --- 4.43411971139678 --- --- --- --- 1.61202967166901 0.820002615451813 0.396839678287506 0.396175742149353 0.633789002895355 0.932372987270355 0.919434010982513 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29E6.08 /GEN=tbp1 /DEF=TATA-binding protein (TBP) --- --- --- --- --- --- SPAC29E6.08 // |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -4.43411971139678 -1.96588357316494 -3.05807181400936 -4.06216857806519 -4.06897621475596 Max fold change at or above threshold 0 4.43411971139678 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771867_at SPAC1783.02c.S1 --- 4.43191853158336 --- --- --- --- 1.18083727359772 1.10876607894897 1.89525735378265 1.56789898872375 0.850341975688934 0.805419981479645 0.601073980331421 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1783.02c /DEF=phosphate acyltransferase (predicted) --- --- --- --- --- --- SPAC1783.02c // |vps66||acyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.43191853158336 -1.06500126222933 -1.07088554607689 1.60501145768229 1.32778582094276 Max fold change at or above threshold 0 4.43191853158336 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775551_at SPCC1020.12c.S1 --- 4.42686339535401 --- --- --- --- 0.618044674396515 0.316060304641724 2.73599934577942 0.691535949707031 0.633789002895355 0.725830018520355 0.725830018520355 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1020.12c /DEF=xap-5-like protein --- --- --- --- --- --- SPCC1020.12c // ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 1.13661004666861 -1.95546440131769 -1.88297879488343 4.42686339535401 1.11890932541774 Max fold change at or above threshold 1 4.42686339535401 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776374_at SPBC651.11c.S1 --- 4.42619999801957 --- --- --- --- 1.38445675373077 6.12788248062134 1.9214084148407 0.622968435287476 0.753906011581421 0.334473013877869 0.753906011581421 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC651.11c /GEN=apm2 /DEF=AP adaptor complex (predicted) --- --- --- --- --- --- SPBC651.11c // |apm2||AP adaptor complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.14409198129962 4.42619999801957 -1.1914012489249 1.38784285580822 -2.22235457739027 Max fold change at or above threshold 1 4.42619999801957 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779979_at YGL255W.S1 High-affinity zinc transporter of the plasma membrane, responsible for the majority of zinc uptake; transcription is induced under low-zinc conditions by the Zap1p transcription factor 4.42578134294202 6709.16723632813 1931.46398925781 ZRT1 6830 // high-affinity zinc ion transport // inferred from mutant phenotype 5887 // integral to plasma membrane // inferred from sequence similarity /// 5887 // integral to plasma membrane // inferred from mutant phenotype 6 // high affinity zinc uptake transporter activity // inferred from sequence similarity /// 6 // high affinity zinc uptake transporter activity // inferred from mutant phenotype 1908.53857421875 8446.7744140625 4971.56005859375 1954.38940429688 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL255W /GEN=ZRT1 /DB_XREF=GI:6321182 /SEG=NC_001139:+20978,22108 /DEF=High-affinity zinc transporter of the plasma membrane, responsible for the majority of zinc uptake; transcription is induced under low-zinc conditions by the Zap1p transcription factor /NOTE=Zrt1p; go_component: integral to plasma membrane [goid GO:0005887] [evidence IMP,ISS] [pmid 8637895]; go_function: high affinity zinc uptake transporter activity [goid GO:0000006] [evidence IMP,ISS] [pmid 8637895]; go_process: high-affinity zinc ion transport [goid GO:0006830] [evidence IMP] [pmid 8637895] --- --- --- --- --- S0003224 // span:48-70,82-104,124-146,219-238,253-272,281-303,313-335,355-372 // numtm:8 S0003224 // ZRT1 SGDID:S0003224, Chr VII from 20978-22108, Verified ORF // sgd // 11 // --- /// GENSCAN00000019159 // cdna:Genscan chromosome:SGD1:VII:20978:22108:1 // ensembl // 11 // --- /// GENEFINDER00000021596 // cdna:GeneFinder chromosome:SGD1:VII:21173:22108:1 // ensembl // 11 // --- /// YGL255W // cdna:known chromosome:SGD1:VII:20978:22108:1 gene:YGL255W // ensembl // 11 // --- --- No cerevisiae_gene 2.25275751166568 4.42578134294202 -1.03376755135497 2.60490415323611 1.02402405206659 Max fold change at or above threshold 4 4.42578134294202 Max fold change at or above threshold -0.777506542171111 1.3302841277083 0.209947606708308 -0.7627251922455 4320.31561279297 3101.93793590414 0.717988733674672 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773502_at SPAC4G9.07.S1 --- 4.42507815338398 --- --- --- --- 0.703479766845703 2.30910229682922 1.97701048851013 3.11295294761658 0.919434010982513 0.805419981479645 0.696289002895355 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G9.07 /GEN=B8647-3 /DEF=possibly S. pombe specific --- --- --- --- --- --- SPAC4G9.07 // |B8647-3||possibly S. pombe specific|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.98250925173189 3.28240044085829 -1.93599302005087 2.81033027769192 4.42507815338398 Max fold change at or above threshold 1 4.42507815338398 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778579_at SPAC3C7.10.S1 --- 4.42456369116799 --- --- --- --- 1.28387069702148 0.460198521614075 0.566648364067078 0.404406398534775 0.601073980331421 0.919434010982513 0.870360970497131 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3C7.10 /DEF=src (SH3) homology domain --- --- --- --- --- --- SPAC3C7.10 // |||src |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.42456369116799 -2.7898192556519 -4.28938858152487 -2.26572735127407 -3.1747042125771 Max fold change at or above threshold 0 4.42456369116799 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769803_s_at YHR053C.S1 Metallothionein, binds copper and mediates resistance to high concentrations of copper and cadmium; locus is variably amplified in different strains, with two copies, CUP1-1 and CUP1-2, in the genomic sequence reference strain S288C /// Metallothionein, binds copper and mediates resistance to high concentrations of copper and cadmium; locus is variably amplified in different strains, with two copies, CUP1-1 and CUP1-2, in the genomic sequence reference strain S288C 4.42375196410444 9159.67578125 2562.73767089844 CUP1-1 /// CUP1-2 46688 // response to copper ion // inferred from mutant phenotype 5829 // cytosol // inferred from direct assay 5507 // copper ion binding // inferred from direct assay 2633.943359375 11651.912109375 6667.439453125 2491.53198242188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR053C /GEN=CUP1-1 /DB_XREF=GI:6321844 /SEG=NC_001140:-212536,212721 /DEF=Metallothionein, binds copper and mediates resistance to high concentrations of copper and cadmium; locus is variably amplified in different strains, with two copies, CUP1-1 and CUP1-2, in the genomic sequence reference strain S288C /NOTE=Cup1-1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 3308865]; go_function: copper ion binding [goid GO:0005507] [evidence IDA] [pmid 3902832]; go_process: response to copper ion [goid GO:0046688] [evidence IMP] [pmid 6370791] --- --- --- --- --- --- S0001095 // CUP1-1 SGDID:S0001095, Chr VIII from 212721-212536, reverse complement, Verified ORF // sgd // 11 // --- /// S0001097 // CUP1-2 SGDID:S0001097, Chr VIII from 214719-214534, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016600 // cdna:Genscan chromosome:SGD1:VIII:212520:212693:-1 // ensembl // 10 // --- /// GENEFINDER00000020120 // cdna:GeneFinder chromosome:SGD1:VIII:212520:212693:-1 // ensembl // 10 // --- /// GENSCAN00000016601 // cdna:Genscan chromosome:SGD1:VIII:214518:214691:-1 // ensembl // 10 // --- /// GENEFINDER00000020215 // cdna:GeneFinder chromosome:SGD1:VIII:214518:214691:-1 // ensembl // 10 // --- /// YHR053C // cdna:known chromosome:SGD1:VIII:212536:212721:-1 gene:YHR053C // ensembl // 11 // --- /// YHR055C // cdna:known chromosome:SGD1:VIII:214534:214719:-1 gene:YHR055C // ensembl // 11 // --- AY253289 // gb // 11 // Negative Strand Matching Probes /// YHR052W-A // ensembl // 10 // Negative Strand Matching Probes /// YHR054W-A // ensembl // 10 // Negative Strand Matching Probes No cerevisiae_gene 1.34806516711294 4.42375196410444 1.2855729067411 2.53135263117697 -1.05715815729353 Max fold change at or above threshold 4 4.42375196410444 Max fold change at or above threshold -0.747285209886418 1.34086004024401 0.186686280044028 -0.78026111040162 5861.20672607422 4318.65012715793 0.736819281249021 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772406_at SPBC336.06c.S1 --- 4.42243973263543 --- --- --- --- 0.462418556213379 2.04501819610596 0.504247605800629 0.208764135837555 0.870360970497131 0.805419981479645 0.962401986122131 0.985840022563934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC336.06c /GEN=rnh1 /DEF=ribonuclease H activity --- --- --- --- --- --- SPBC336.06c // |rnh1||ribonuclease H activity|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.17283519049004 4.42243973263543 2.98564544702721 1.09045711731332 -2.21502871821432 Max fold change at or above threshold 0 4.42243973263543 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770749_at YER124C.S1 Daughter cell-specific protein, may participate in pathways regulating cell wall metabolism; deletion affects cell separation after division and sensitivity to drugs targeted against the cell wall 4.42209906510797 392.084014892578 161.026710510254 DSE1 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5935 // bud neck // inferred from direct assay --- 157.844696044922 248.309936523438 535.858093261719 164.208724975586 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER124C /GEN=DSE1 /DB_XREF=GI:6320971 /SEG=NC_001137:-407338,409059 /DEF=Daughter cell-specific protein, may participate in pathways regulating cell wall metabolism; deletion affects cell separation after division and sensitivity to drugs targeted against the cell wall /NOTE=Dse1p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 11309124] --- --- --- --- --- --- S0000926 // DSE1 SGDID:S0000926, Chr V from 409059-407338, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016905 // cdna:Genscan chromosome:SGD1:V:407338:409059:-1 // ensembl // 11 // --- /// GENEFINDER00000019767 // cdna:GeneFinder chromosome:SGD1:V:407338:408912:-1 // ensembl // 11 // --- /// YER124C // cdna:known chromosome:SGD1:V:407338:409059:-1 gene:YER124C // ensembl // 11 // --- --- No cerevisiae_gene 4.42209906510797 1.57312816170123 1.45145985648426 3.39484383503907 1.04031829443831 Max fold change at or above threshold 4 4.42209906510797 Max fold change at or above threshold -0.667976910059581 -0.158935106954434 1.4590789657587 -0.632166948744683 276.555362701416 177.716721744028 0.642608120153867 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777893_at SPAC4H3.02c.S1 --- 4.42206914255127 --- --- --- --- 2.28852701187134 10.1200246810913 5.19916152954102 4.98440742492676 0.633789002895355 0.111571997404099 0.366210997104645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4H3.02c /DEF=sequence orphan --- --- --- --- --- --- SPAC4H3.02c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -3.11708118976275 4.42206914255127 2.76138545969081 2.27183751931756 2.17799807433821 Max fold change at or above threshold 3 4.42206914255127 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776430_at SPAC13F5.04c.S1 --- 4.42096304761996 --- --- --- --- 10.6190729141235 2.40198183059692 11.7246017456055 7.98466968536377 0.274170011281967 0.533936023712158 0.303710997104645 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13F5.04c /DEF=sequence orphan --- --- --- --- --- --- SPAC13F5.04c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.22435003877414 -4.42096304761996 -1.16280141980988 1.10410784824837 -1.32993265001165 Max fold change at or above threshold 3 4.42096304761996 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780064_at YHR120W.S1 DNA-binding protein of the mitochondria involved in repair of mitochondrial DNA, has ATPase activity and binds to DNA mismatches; has homology to E. coli MutS; transcription is induced during meiosis 4.41828020311036 41.3499431610107 138.760143280029 MSH1 6281 // DNA repair // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 5524 // ATP binding // inferred from sequence similarity 124.356071472168 28.145809173584 54.5540771484375 153.164215087891 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR120W /GEN=MSH1 /DB_XREF=GI:6321912 /SEG=NC_001140:+349576,352455 /DEF=mutS homolog involved in mitochondrial DNA repair /NOTE=Msh1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11862493]; go_function: ATP binding [goid GO:0005524] [evidence ISS] [pmid 11862493]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 1334021] --- --- --- --- --- --- S0001162 // MSH1 SGDID:S0001162, Chr VIII from 349576-352455, Verified ORF // sgd // 11 // --- /// GENSCAN00000016657 // cdna:Genscan chromosome:SGD1:VIII:350449:352455:1 // ensembl // 11 // --- /// GENEFINDER00000020172 // cdna:GeneFinder chromosome:SGD1:VIII:350449:352455:1 // ensembl // 11 // --- /// YHR120W // cdna:known chromosome:SGD1:VIII:349576:352455:1 gene:YHR120W // ensembl // 11 // --- --- No cerevisiae_gene -1.76719534212226 -4.41828020311036 1.66873982605339 -2.27950096440647 1.23165852116975 Max fold change at or above threshold 4 4.41828020311036 Max fold change at or above threshold 0.586752564358459 -1.05901786873583 -0.6072786718572 1.07954397623457 90.05504322052 58.4591024142381 0.649148568737986 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776392_at SPAPB24D3.09c.S1 --- 4.41739639104594 --- --- --- --- 2.56282424926758 8.83592796325684 11.3210105895996 7.03415155410767 0.358154296875 0.219482004642487 0.219482004642487 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB24D3.09c /DEF=ABC transporter family --- --- --- --- --- --- SPAPB24D3.09c // |||ABC transporter family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.44564967424746 3.44773074696091 3.87930448075329 4.41739639104594 2.74468745022915 Max fold change at or above threshold 4 4.41739639104594 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1770626_at YGR092W.S1 Ser/Thr kinase involved in transcription and stress response; functions as part of a network of genes in exit from mitosis; localization is cell cycle regulated; activated by Cdc15p during the exit from mitosis 4.41670052745127 291.337562561035 1027.37719726563 DBF2 280 // nuclear division // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from direct assay 5816 // spindle pole body // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 4674 // protein serine/threonine kinase activity // inferred from direct assay 1023.517578125 231.738052368164 350.937072753906 1031.23681640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR092W /GEN=DBF2 /DB_XREF=GI:6321529 /SEG=NC_001139:+668191,669909 /DEF=Kinase required for late nuclear division. Cdc15 promotes the exit from mitosis by directly switching on the kinase activity of Dbf2. /NOTE=Dbf2p; go_component: bud neck [goid GO:0005935] [evidence TAS] [pmid 11434459]; go_component: spindle pole body [goid GO:0005816] [evidence TAS] [pmid 11434459]; go_function: protein kinase activity [goid GO:0004672] [evidence TAS] [pmid 11404483]; go_process: nuclear division [goid GO:0000280] [evidence IMP] [pmid 2181271]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 11404483] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-59 /// hanks // 1.7.1 // AGC group; AGC VII Budding yeast DBF2/20; DBF2 // 1.0E-154 --- --- S0003324 // DBF2 SGDID:S0003324, Chr VII from 668193-669911, Verified ORF // sgd // 11 // --- /// GENSCAN00000019411 // cdna:Genscan chromosome:SGD1:VII:668394:669911:1 // ensembl // 11 // --- /// YGR092W // cdna:known chromosome:SGD1:VII:668193:669911:1 gene:YGR092W // ensembl // 11 // --- --- No cerevisiae_gene -1.17309425572965 -4.41670052745127 -1.42543027744924 -2.91652737082793 1.00754187172378 Max fold change at or above threshold 4 4.41670052745127 Max fold change at or above threshold 0.851355804491529 -0.999714407027898 -0.721043705524931 0.8694023080613 659.35737991333 427.741487507875 0.648724804694079 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771650_at YBR267W.S1 Protein of unknown function involved in bud growth in the mitotic signaling network; proposed negative regulator of Swe1p and Gin4p; contains dispersed C2H2 zinc finger domains 4.41305789723894 153.661560058594 648.517608642578 REI1 278 // mitotic cell cycle // inferred from genetic interaction /// 7117 // budding cell bud growth // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay --- 612.898498535156 138.882949829102 168.440170288086 684.13671875 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR267W /GEN=REI1 /DB_XREF=GI:6319743 /SEG=NC_001134:+739798,740979 /DEF=Protein of unknown function involved in bud growth in the mitotic signaling network; proposed negative regulator of Swe1p and Gin4p; contains dispersed C2H2 zinc finger domains /NOTE=Rei1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 15107529]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: bud growth [goid GO:0007117] [evidence IGI] [pmid 15107529]; go_process: mitotic cell cycle [goid GO:0000278] [evidence IGI] [pmid 15107529] --- --- --- --- --- --- S0000471 // REI1 SGDID:S0000471, Chr II from 739836-741017, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022350 // cdna:GeneFinder chromosome:SGD1:II:739836:741017:1 // ensembl // 11 // --- /// GENSCAN00000021352 // cdna:Genscan chromosome:SGD1:II:740142:741017:1 // ensembl // 11 // --- /// YBR267W // cdna:known chromosome:SGD1:II:739836:741017:1 gene:YBR267W // ensembl // 11 // --- --- No cerevisiae_gene 1.35278665656084 -4.41305789723894 -1.40031482135603 -3.63867180546604 1.11623167683573 Max fold change at or above threshold 4 4.41305789723894 Max fold change at or above threshold 0.736893070015831 -0.912229084573302 -0.809398139006128 0.984734153563599 401.089584350586 287.435074101077 0.716635597921272 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777283_at SPBC3E7.07c.S1 --- 4.41265983560951 --- --- --- --- 4.02516269683838 4.40282964706421 1.44265735149384 5.22724294662476 0.65771484375 0.71875 0.870360970497131 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3E7.07c /DEF=hypothetical protein --- --- --- --- --- --- SPBC3E7.07c // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- X66795 // gb // 7 // Cross Hyb Matching Probes No No 1.35121232576008 1.09382650557764 -4.41265983560951 -2.7901030640924 1.29864140665185 Max fold change at or above threshold 3 4.41265983560951 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-ThrX-3_at AFFX-ThrX-3 --- 4.41243337361366 --- --- --- --- 0.632098019123077 1.66257321834564 1.82572519779205 2.78909039497375 0.76093727350235 0.699393630027771 0.672920525074005 0.485109865665436 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=thrB /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 1689-2151 of gb:X04603.1 /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase (EC 2.7.1.39 and EC 4.2.99.2, respectively). --- --- --- --- --- --- AFFX-ThrX-3 // B. subtilis /GEN=thrB /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 1689-2151 of gb:X04603.1 /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase (EC 2.7.1.39 and EC 4.2.99.2, respectively). // affx // --- // --- /// AFFX-ThrX-3 // --- // unknown // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-ThrX-3 // --- // gb // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X04603 // Bacillus subtilis /REF=X04603 /DEF=B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 /LEN=2073 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-ThrX-3 // --- // unknown // --- // --- /// AFFX-ThrX-3 // --- // unknown // --- // --- /// AFFX-ThrX-3 // --- // unknown // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-ThrX-3 // --- // unknown // --- // --- /// AFFX-ThrX-3 // --- // affx // --- // --- /// AFFX-ThrX-3 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-ThrX-3 // --- // affx // --- // --- /// AFFX-ThrX-3 // --- // affx // --- // --- /// AFFX-ThrX-3 // --- // affx // --- // --- /// AFFX-ThrX-3 // --- // affx // --- // --- /// AFFX-ThrX-3 // --- // affx // --- // --- /// AFFX-ThrX-3 // --- // affx // --- // --- /// AFFX-ThrX-3 // --- // affx // --- // --- /// AFFX-ThrX-3 // --- // affx // --- // --- /// AFFX-ThrX-3 // --- // affx // --- // --- /// AFFX-ThrX-3 // --- // affx // --- // --- /// AFFX-ThrX-3 // --- // affx // --- // --- 50812173 // gb // 20 // Negative Strand Matching Probes AFFX_control No 1.31892696215739 2.63024589232563 -1.03393682782765 2.88835772705777 4.41243337361366 Max fold change at or above threshold 1 4.41243337361366 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772378_at SPBC17D1.04.S1 --- 4.41166202209784 --- --- --- --- 0.741052687168121 1.272545337677 3.26927399635315 0.47974967956543 0.870360970497131 0.696289002895355 0.633789002895355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17D1.04 /DEF=hypothetical protein --- --- --- --- --- --- SPBC17D1.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.49263983232741 1.7172130399256 2.33407387442299 4.41166202209784 -1.54466530929085 Max fold change at or above threshold 1 4.41166202209784 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779045_at YOR247W.S1 Mannoprotein that exhibits a tight association with the cell wall, required for cell wall stability in the absence of GPI-anchored mannoproteins; has a high serine-threonine content; expression is induced in cell wall mutants 4.4113032427292 570.179702758789 270.728012084961 SRL1 6139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolism // inferred from genetic interaction 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 263.497955322266 452.302581787109 688.056823730469 277.958068847656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR247W /GEN=SRL1 /DB_XREF=GI:6324821 /SEG=NC_001147:+797676,798308 /DEF=Suppressor of Rad53 null Lethality /NOTE=Srl1p; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 13679573]; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 11935221]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ISS] [pmid 9744871]; go_process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism [goid GO:0006139] [evidence IGI] [pmid 9744871] --- --- --- --- --- --- S0005773 // SRL1 SGDID:S0005773, Chr XV from 797676-798308, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022845 // cdna:GeneFinder chromosome:SGD1:XV:797126:798308:1 // ensembl // 9 // --- /// YOR247W // cdna:known chromosome:SGD1:XV:797676:798308:1 gene:YOR247W // ensembl // 11 // --- YOR248W // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 4.4113032427292 1.71653165670273 -1.23675657356748 2.61124160485024 1.05487751701035 Max fold change at or above threshold 4 4.4113032427292 Max fold change at or above threshold -0.79286200023227 0.16088368113128 1.35179512396335 -0.719816804862357 420.453857421875 197.961186251364 0.470827375601251 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776950_at SPAC1851.03.S1 --- 4.41029059506364 --- --- --- --- 6.16602420806885 1.39809930324554 4.81562805175781 5.20764303207397 0.2392578125 0.432372987270355 0.457763671875 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1851.03 /GEN=ckb1 /DEF=protein kinase CK2 complex (beta subunit) (regulatory subunit) (PMID 8264625) --- --- --- --- --- --- X74274 // S.pombe mRNA for casein kinase II beta subunit. // gb // 10 // --- /// SPAC1851.03 // |ckb1||CK2 family |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.54215895861882 -4.41029059506364 1.03097240835846 -1.28041953028704 -1.18403357720416 Max fold change at or above threshold 3 4.41029059506364 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778900_at SPBC1289.07c.S1 --- 4.40696821425551 --- --- --- --- 0.799764335155487 0.584376811981201 0.917373955249786 0.181477218866348 0.888427972793579 0.904784977436066 0.870360970497131 0.916015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1289.07c /GEN=rpc40 /DEF=DNA-directed RNA polymerase (I and III subunit) (predicted) --- --- --- --- --- --- SPBC1289.07c // |rpc40|rpa42|DNA-directed RNA polymerase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.20003519200848 -1.36857643691245 1.71356969415074 1.14705534483659 -4.40696821425551 Max fold change at or above threshold 0 4.40696821425551 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778356_at SPAC1786.01c.S1 --- 4.40670122770577 --- --- --- --- 1.28999245166779 5.68461132049561 1.37960922718048 0.819069504737854 0.870360970497131 0.828612983226776 0.850341975688934 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1786.01c /DEF=phospholipase --- --- --- --- --- --- SPAC1786.01c // ||SPAC31G5.20c|phospholipase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.05181633810642 4.40670122770577 -3.90197572560718 1.0694707751172 -1.57494869996491 Max fold change at or above threshold 1 4.40670122770577 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775533_at SPCC1682.01.S1 --- 4.40562844473768 --- --- --- --- 4.04057836532593 2.95357728004456 0.917140066623688 1.90981149673462 0.398925989866257 0.334473013877869 0.696289002895355 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1682.01 /GEN=qcr9 /DEF=ubiquinol-cytochrome-c reductase complex subunit 10 --- --- --- --- --- --- SPCC1682.01 // |qcr9||ubiquinol-cytochrome-c reductase complex subunit 10|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.95841225454851 -1.36802865888275 -1.18766448509516 -4.40562844473768 -2.1156948590133 Max fold change at or above threshold 2 4.40562844473768 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779337_at SPAC630.15.S1 --- 4.40497664118691 --- --- --- --- 0.944396317005157 0.828554928302765 0.819241225719452 4.16004371643066 0.828612983226776 0.850341975688934 0.805419981479645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC630.15 /DEF=sequence orphan --- --- --- --- --- --- SPAC630.15 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.66260281825543 -1.13981135679162 1.4733757623621 -1.15276952301295 4.40497664118691 Max fold change at or above threshold 1 4.40497664118691 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771248_at SPBC725.13c.S1 --- 4.40476836789954 --- --- --- --- 7.77618408203125 6.91504526138306 3.88345003128052 2.02592182159424 0.0239257998764515 0.366210997104645 0.366210997104645 0.219482004642487 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC725.13c /DEF=GINS complex --- --- --- --- --- --- SPBC725.13c // |psf2|dre13|GINS complex subunit Psf2|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -3.43871331649947 -1.12453119077285 -4.40476836789954 -2.00239066278578 -3.8383436118537 Max fold change at or above threshold 3 4.40476836789954 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1771747_at SPAPB24D3.06c.S1 --- 4.40471332252479 --- --- --- --- 0.926346123218536 0.720804572105408 1.20078074932098 0.214303493499756 0.850341975688934 0.904784977436066 0.919434010982513 0.981445014476776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB24D3.06c /DEF=hypothetical protein --- --- --- --- --- --- SPAPB24D3.06c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.40471332252479 -1.28515572606977 -1.42336031349718 1.29625495181967 -4.32258993117904 Max fold change at or above threshold 0 4.40471332252479 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777496_at SPAC17H9.14c.S1 --- 4.40423988945163 --- --- --- --- 2.06641626358032 7.29461097717285 0.859262526035309 0.693226516246796 0.633789002895355 0.5 0.753906011581421 0.62548828125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17H9.14c /DEF=protein disulfide isomerase (predicted) --- --- --- --- --- --- SPAC17H9.14c // |||thioredoxin family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.40423988945163 3.53007818692543 -2.34372429801599 -2.40487185344262 -2.98086731414737 Max fold change at or above threshold 1 4.40423988945163 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777412_at SPAC2E12.05.S1 --- 4.40412126299728 --- --- --- --- 3.07759594917297 13.554105758667 0.700200915336609 2.05316948890686 0.696289002895355 0.129638999700546 0.633789002895355 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2E12.05 /GEN=wtf1 /DEF=wtf element --- --- --- --- --- --- SPAC2E12.05 // |wtf1||wtf element|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- AB054530 // gb // 1 // Cross Hyb Matching Probes No No -1.09302020750357 4.40412126299728 -2.4941783255056 -4.3953040931023 -1.49894880369157 Max fold change at or above threshold 2 4.40412126299728 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772710_at YHR167W.S1 Subunit of the THO complex, which functions to connect transcription elongation with mitotic recombination, and of the TREX complex, which is recruited to activated genes and couples transcription to mRNA export 4.4035724299214 10.4976963996887 59.0235271453857 THP2 6310 // DNA recombination // inferred from mutant phenotype /// 6368 // RNA elongation from RNA polymerase II promoter // inferred from mutant phenotype /// 6406 // mRNA-nucleus export // inferred from mutant phenotype 347 // THO complex // inferred from mutant phenotype /// 347 // THO complex // inferred from physical interaction 3676 // nucleic acid binding // inferred from direct assay 40.9505577087402 11.6959981918335 9.29939460754395 77.0964965820313 0.00805663969367743 0.0375977009534836 0.018554700538516 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR167W /GEN=THP2 /DB_XREF=GI:6321961 /SEG=NC_001140:+439342,440127 /DEF=affects transcription elongation /NOTE=Thp2p; go_component: THO complex [goid GO:0000347] [evidence IMP,IPI] [pmid 11060033]; go_function: nucleic acid binding [goid GO:0003676] [evidence IDA] [pmid 12093753]; go_process: DNA recombination [goid GO:0006310] [evidence IMP] [pmid 11060033]; go_process: RNA elongation from Pol II promoter [goid GO:0006368] [evidence IMP] [pmid 12093753]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 11979277] --- --- --- --- --- --- S0001210 // THP2 SGDID:S0001210, Chr VIII from 439343-440128, Verified ORF // sgd // 11 // --- /// GENSCAN00000016693 // cdna:Genscan chromosome:SGD1:VIII:439343:440128:1 // ensembl // 11 // --- /// GENEFINDER00000020179 // cdna:GeneFinder chromosome:SGD1:VIII:439343:440128:1 // ensembl // 11 // --- /// YHR167W // cdna:known chromosome:SGD1:VIII:439343:440128:1 gene:YHR167W // ensembl // 11 // --- --- No cerevisiae_gene 1.17738557158617 -3.5012452154219 1.58378987200957 -4.4035724299214 1.8826726886207 Max fold change at or above threshold 4 4.4035724299214 Max fold change at or above threshold 0.195388884966056 -0.728046605924161 -0.803696653091977 1.33635437405008 34.7606117725372 31.6801333774865 0.911380201959376 PPPPPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1776966_at SPAC19B12.01.S1 --- 4.40172361231541 --- --- --- --- 0.878847539424896 0.275666147470474 0.363717824220657 3.86844396591187 0.888427972793579 0.932372987270355 0.919434010982513 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19B12.01 /DEF=TPR repeat protein --- --- --- --- --- --- SPAC19B12.01 // ||SPAC4F10.21|TPR repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.39357295159748 -3.188086558648 1.18303977418196 -2.41628944445605 4.40172361231541 Max fold change at or above threshold 1 4.40172361231541 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772122_s_at YFL064C.S1 Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// similar to other subtelomerically-encoded proteins /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein 4.40002422378204 72.7704582214355 26.7789459228516 YRF1-5 /// YRF1-7 /// YRF1-6 /// YRF1-3 /// YRF1-2 /// YRF1-1 722 // telomerase-independent telomere maintenance // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay /// 5634 // nucleus // inferred from curator 4386 // helicase activity // inferred from sequence similarity /// 3678 // DNA helicase activity // inferred from direct assay 16.6926002502441 73.4478454589844 72.0930709838867 36.865291595459 0.0561522990465164 0.000732421991415322 0.000244141003349796 0.000732421991415322 M P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL064C /DB_XREF=GI:14318455 /SEG=NC_001138:-3322,3846 /DEF=Hypothetical ORF /NOTE=Yfl064cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 0.239999994635582 /// scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 2.40000009536743 /// scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 5.0 --- S0002151 // YBL111C SGDID:S0002151, Chr II from 5009-4216,4116-2907, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0002953 // YRF1-1 SGDID:S0002953, Chr IV from 1526304-1531694, Verified ORF // sgd // 11 // --- /// S0000992 // YRF1-2 SGDID:S0000992, Chr V from 571475-576520, Verified ORF // sgd // 11 // --- /// S0001830 // YFL064C SGDID:S0001830, Chr VI from 3846-3322, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0003528 // YRF1-3 SGDID:S0003528, Chr VII from 1084870-1084888,1085037-1090597, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0001041 // YHL049C SGDID:S0001041, Chr VIII from 4540-3725, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0001261 // YHR218W SGDID:S0001261, Chr VIII from 558013-558614,558714-559923, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0001439 // YIL177C SGDID:S0001439, Chr IX from 6147-4987,4598-483, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0003760 // YJL225C SGDID:S0003760, Chr X from 6130-4970,4581-466, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0004454 // YLR462W SGDID:S0004454, Chr XII from 1065953-1066561, Uncharacterized ORF // sgd // 11 // --- /// S0004459 // YRF1-5 SGDID:S0004459, Chr XII from 1072505-1077895, Verified ORF // sgd // 11 // --- /// S0004602 // YML133C SGDID:S0004602, Chr XIII from 4684-3891,3791-461, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0005283 // YRF1-6 SGDID:S0005283, Chr XIV from 6098-6080,5931-371, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0006204 // YRF1-7 SGDID:S0006204, Chr XVI from 6007-5989,5840-280, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0006406 // YPR202W SGDID:S0006406, Chr XVI from 943028-943046,943195-943892, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021053 // cdna:Genscan chromosome:SGD1:II:4194:5009:-1 // ensembl // 11 // --- /// GENSCAN00000025522 // cdna:Genscan chromosome:SGD1:IV:1526304:1531694:1 // ensembl // 11 // --- /// GENEFINDER00000023783 // cdna:GeneFinder chromosome:SGD1:IV:1526496:1531694:1 // ensembl // 11 // --- /// GENSCAN00000016342 // cdna:Genscan chromosome:SGD1:IX:4966:6147:-1 // ensembl // 11 // --- /// GENSCAN00000016965 // cdna:Genscan chromosome:SGD1:V:571475:576520:1 // ensembl // 11 // --- /// GENSCAN00000019569 // cdna:Genscan chromosome:SGD1:VII:1085210:1090597:1 // ensembl // 11 // --- /// GENEFINDER00000021702 // cdna:GeneFinder chromosome:SGD1:VII:1085402:1090597:1 // ensembl // 11 // --- /// GENEFINDER00000020212 // cdna:GeneFinder chromosome:SGD1:VIII:445:4348:-1 // ensembl // 11 // --- /// GENSCAN00000016512 // cdna:Genscan chromosome:SGD1:VIII:3725:4540:-1 // ensembl // 11 // --- /// GENSCAN00000016741 // cdna:Genscan chromosome:SGD1:VIII:558013:558636:1 // ensembl // 11 // --- /// GENSCAN00000023969 // cdna:Genscan chromosome:SGD1:X:4949:6130:-1 // ensembl // 11 // --- /// GENEFINDER00000024818 // cdna:GeneFinder chromosome:SGD1:XII:455:4616:-1 // ensembl // 11 // --- /// GENSCAN00000017636 // cdna:Genscan chromosome:SGD1:XII:3993:4808:-1 // ensembl // 11 // --- /// GENSCAN00000017640 // cdna:Genscan chromosome:SGD1:XII:9528:10343:-1 // ensembl // 11 // --- /// GENSCAN00000018170 // cdna:Genscan chromosome:SGD1:XII:1065953:1066561:1 // ensembl // 11 // --- /// GENSCAN00000018172 // cdna:Genscan chromosome:SGD1:XII:1072505:1077895:1 // ensembl // 11 // --- /// GENEFINDER00000024799 // cdna:GeneFinder chromosome:SGD1:XII:1072697:1077895:1 // ensembl // 11 // --- /// GENSCAN00000018603 // cdna:Genscan chromosome:SGD1:XIII:3869:4684:-1 // ensembl // 11 // --- /// GENSCAN00000019774 // cdna:Genscan chromosome:SGD1:XIV:371:5758:-1 // ensembl // 11 // --- /// GENEFINDER00000020706 // cdna:GeneFinder chromosome:SGD1:XIV:371:5566:-1 // ensembl // 11 // --- /// GENSCAN00000017839 // cdna:Genscan chromosome:SGD1:XV:1085469:1090859:1 // ensembl // 11 // --- /// GENEFINDER00000022814 // cdna:GeneFinder chromosome:SGD1:XV:1085661:1090859:1 // ensembl // 11 // --- /// GENSCAN00000016966 // cdna:Genscan chromosome:SGD1:XVI:280:5667:-1 // ensembl // 11 // --- /// GENEFINDER00000020788 // cdna:GeneFinder chromosome:SGD1:XVI:280:5475:-1 // ensembl // 11 // --- /// GENSCAN00000017338 // cdna:Genscan chromosome:SGD1:XVI:943368:943892:1 // ensembl // 11 // --- /// YBL111C // cdna:known chromosome:SGD1:II:2907:5009:-1 gene:YBL111C // ensembl // 11 // --- /// YDR545W // cdna:known chromosome:SGD1:IV:1526304:1531694:1 gene:YDR545W // ensembl // 11 // --- /// YIL177C // cdna:known chromosome:SGD1:IX:483:6147:-1 gene:YIL177C // ensembl // 11 // --- /// YER190W // cdna:known chromosome:SGD1:V:571475:576520:1 gene:YER190W // ensembl // 11 // --- /// YFL064C // cdna:known chromosome:SGD1:VI:3322:3846:-1 gene:YFL064C // ensembl // 11 // --- /// YGR296W // cdna:known chromosome:SGD1:VII:1084870:1090597:1 gene:YGR296W // ensembl // 11 // --- /// YHL049C // cdna:known chromosome:SGD1:VIII:3725:4540:-1 gene:YHL049C // ensembl // 11 // --- /// YHR218W // cdna:known chromosome:SGD1:VIII:558013:559923:1 gene:YHR218W // ensembl // 11 // --- /// YJL225C // cdna:known chromosome:SGD1:X:466:6130:-1 gene:YJL225C // ensembl // 11 // --- /// YLR462W // cdna:known chromosome:SGD1:XII:1065953:1066561:1 gene:YLR462W // ensembl // 11 // --- /// YLR467W // cdna:known chromosome:SGD1:XII:1072505:1077895:1 gene:YLR467W // ensembl // 11 // --- /// YML133C // cdna:known chromosome:SGD1:XIII:461:4684:-1 gene:YML133C // ensembl // 11 // --- /// YNL339C // cdna:known chromosome:SGD1:XIV:371:6098:-1 gene:YNL339C // ensembl // 11 // --- /// YPL283C // cdna:known chromosome:SGD1:XVI:280:6007:-1 gene:YPL283C // ensembl // 11 // --- /// YPR202W // cdna:known chromosome:SGD1:XVI:943028:943892:1 gene:YPR202W // ensembl // 11 // --- YEL075W-A // ensembl // 11 // Negative Strand Matching Probes /// YLR463C // ensembl // 11 // Negative Strand Matching Probes No cerevisiae_gene 3.80694171323841 4.40002422378204 2.26377710464103 4.31886404173803 2.20848106602923 Max fold change at or above threshold 4 4.40002422378204 Max fold change at or above threshold -1.18972515046835 0.85135262050744 0.802631131319311 -0.464258601358401 49.7747020721436 27.806507922335 0.558647400481317 MPPPPP Called_P_>2EXP 1 0 MPPP 0 3 1 Yes Yes 2 < x = 3
1773618_at SPAC23D3.01.S1 --- 4.39922351570624 --- --- --- --- 2.74403381347656 12.0716180801392 4.35641050338745 5.72904205322266 0.432372987270355 0.064453125 0.466064006090164 0.111571997404099 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23D3.01 /DEF=PWWP domain protein --- --- --- --- --- --- SPAC23D3.01 // |||PWWP domain protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.24471055613337 4.39922351570624 -2.7971389220966 1.58759359377867 2.08781758631619 Max fold change at or above threshold 4 4.39922351570624 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1778998_at SPBC19G7.10c.S1 --- 4.39889467086521 --- --- --- --- 0.475649029016495 2.09232997894287 0.661983847618103 0.363145023584366 0.99804699420929 0.696289002895355 0.904784977436066 0.991943001747131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19G7.10c /DEF=topoisomerase associated protein (predicted) --- --- --- --- --- --- SPBC19G7.10c // |||topoisomerase associated protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.63863421438907 4.39889467086521 -1.03593543086441 1.39174855247134 -1.30980461833588 Max fold change at or above threshold 0 4.39889467086521 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771753_at SPAC16A10.02.S1 --- 4.39770897464778 --- --- --- --- 2.62395572662354 6.65447521209717 4.3556227684021 2.53259944915771 0.601073980331421 0.432372987270355 0.149657994508743 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16A10.02 /DEF=TREX complex (predicted) --- --- --- --- --- --- SPAC16A10.02 // |||TREX complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -4.39770897464778 2.53604706229554 -2.5288117110078 1.65994522095342 -1.03607213825155 Max fold change at or above threshold 4 4.39770897464778 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773458_at SPBC8E4.02c.S1 --- 4.39400542978365 --- --- --- --- 1.1997377872467 0.371628969907761 0.423609793186188 0.273039668798447 0.6884765625 0.919434010982513 0.943848013877869 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8E4.02c /DEF=hypothetical protein --- --- --- --- --- --- SPBC8E4.02c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.72639065671846 -3.22832148296857 2.29663488051128 -2.83217670258012 -4.39400542978365 Max fold change at or above threshold 0 4.39400542978365 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771595_at SPAPB1E7.06c.S1 --- 4.39214981227771 --- --- --- --- 1.75312733650208 7.6999979019165 3.76740121841431 1.2078183889389 0.725830018520355 0.567627012729645 0.567627012729645 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1E7.06c /GEN=eme1 /DEF=endodeoxyribonuclease RUS activity (PMID 11741546) --- --- --- --- --- --- SPAPB1E7.06c // |eme1||Holliday junction resolvase Eme1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.3948620114288 4.39214981227771 -4.26594213450586 2.14896039778332 -1.45148256770808 Max fold change at or above threshold 2 4.39214981227771 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770011_at YOL066C.S1 DRAP deaminase, catalyzes the third step of the riboflavin biosynthesis pathway; N-terminus has sequence similarity to RNA:pseudouridine synthases 4.39189893982325 205.897857666016 888.716400146484 RIB2 9231 // riboflavin biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4730 // pseudouridylate synthase activity // inferred from sequence similarity /// 17173 // DRAP deaminase activity // inferred from genetic interaction /// 17173 // DRAP deaminase activity // inferred from mutant phenotype 872.85205078125 213.054336547852 198.74137878418 904.580749511719 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL066C /GEN=RIB2 /DB_XREF=GI:6324506 /SEG=NC_001147:-202695,204470 /DEF=N-terminal part related to RNA:pseudouridine (psi)-synthases C-terminal portion contains the deaminase domain implicated in Riboflavin synthesis /NOTE=Rib2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: DRAP deaminase activity [goid GO:0017173] [evidence IGI,IMP] [pmid 4555411]; go_function: pseudouridylate synthase activity [goid GO:0004730] [evidence ISS] [pmid 8710514]; go_process: vitamin B2 biosynthesis [goid GO:0009231] [evidence IMP] [pmid 5366000] --- --- --- --- --- --- S0005427 // RIB2 SGDID:S0005427, Chr XV from 204470-202695, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017414 // cdna:Genscan chromosome:SGD1:XV:202695:204470:-1 // ensembl // 11 // --- /// GENEFINDER00000022670 // cdna:GeneFinder chromosome:SGD1:XV:202695:204470:-1 // ensembl // 11 // --- /// YOL066C // cdna:known chromosome:SGD1:XV:202695:204470:-1 gene:YOL066C // ensembl // 11 // --- --- No cerevisiae_gene -1.80259884773804 -4.09685184035299 -1.31604751969888 -4.39189893982325 1.03635060340646 Max fold change at or above threshold 4 4.39189893982325 Max fold change at or above threshold 0.825247639665661 -0.84732185763088 -0.883604821416873 0.905679039382091 547.30712890625 394.481494072362 0.720768053689894 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Bs-phe-3_at AFFX-r2-Bs-phe-3 --- 4.39189654657929 --- --- --- --- 6.71986389160156 3.23905777931213 8.95258235931396 1.99743735790253 0.601073980331421 0.432372987270355 0.129638999700546 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=pheB /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2897-3200 of gb:M24537.1, not 100% identical /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. --- --- --- --- --- --- M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-r2-Bs-phe-3 // --- // unknown // --- // --- /// AFFX-r2-Bs-phe-3 // B. subtilis /GEN=pheB /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2897-3200 of gb:M24537.1, not 100% identical /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. // affx // --- // --- /// AFFX-r2-Bs-phe-3 // --- // unknown // --- // --- /// AFFX-r2-Bs-phe-3 // --- // unknown // --- // --- /// AFFX-r2-Bs-phe-3 // --- // gb // --- // --- /// AFFX-r2-Bs-phe-3 // --- // unknown // --- // --- /// AFFX-r2-Bs-phe-3 // B. subtilis /GEN=pheB /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2897-3200 of gb:M24537.1, not 100% identical /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. // affx // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-phe-3 // --- // unknown // --- // --- /// AFFX-r2-Bs-phe-3 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-3 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-phe-3 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-3 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-3 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-3 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-3 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-3 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-3 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-3 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-3 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-3 // --- // affx // --- // --- /// AFFX-r2-Bs-phe-3 // --- // affx // --- // --- 50812173 // gb // 11 // Negative Strand Matching Probes AFFX_control No 1.38845843371716 -2.07463538764925 -4.39189654657929 1.33225650157927 -3.36424262068372 Max fold change at or above threshold 3 4.39189654657929 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771995_at SPAC26H5.11.S1 --- 4.39034918448618 --- --- --- --- 4.11555242538452 3.59621453285217 18.0687122344971 0.948134899139404 0.753906011581421 0.633789002895355 0.274170011281967 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26H5.11 /DEF=involved in spore wall assembly (predicted) --- --- --- --- --- --- SPAC26H5.11 // |||spore wall protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.26240771716727 -1.14441237801252 -3.0876795759428 4.39034918448618 -4.34068235345001 Max fold change at or above threshold 3 4.39034918448618 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769499_at SPAC1002.20.S1 --- 4.39001787908672 --- --- --- --- 0.332326203584671 0.424539595842361 0.656882345676422 0.527133107185364 0.904784977436066 0.919434010982513 0.725830018520355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1002.20 /DEF=dubious --- --- --- --- --- --- SPAC1002.20 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.08147176172362 1.2774785474724 4.39001787908672 1.9766191729418 1.58619182447664 Max fold change at or above threshold 0 4.39001787908672 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776164_at YJR036C.S1 Protein with similarity to hect domain E3 ubiquitin-protein ligases, not essential for viability 4.38862291971679 174.771186828613 432.984756469727 HUL4 209 // protein polyubiquitination // traceable author statement /// 6513 // protein monoubiquitination // traceable author statement --- 4842 // ubiquitin-protein ligase activity // traceable author statement 376.778137207031 203.54541015625 145.996963500977 489.191375732422 0.000244141003349796 0.000732421991415322 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR036C /GEN=HUL4 /DB_XREF=GI:6322497 /SEG=NC_001142:-500627,503305 /DEF=Protein with similarity to hect domain E3 ubiquitin-protein ligases, not essential for viability /NOTE=Hul4p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 9858558]; go_process: protein monoubiquitination [goid GO:0006513] [evidence TAS] [pmid 9858558]; go_process: protein polyubiquitination [goid GO:0000209] [evidence TAS] [pmid 9858558] --- --- --- --- --- --- S0003797 // HUL4 SGDID:S0003797, Chr X from 503305-500627, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024162 // cdna:Genscan chromosome:SGD1:X:500627:503305:-1 // ensembl // 11 // --- /// YJR036C // cdna:known chromosome:SGD1:X:500627:503305:-1 gene:YJR036C // ensembl // 11 // --- --- No cerevisiae_gene -4.38862291971679 -1.8510765578934 1.50889605002841 -2.58072584642838 1.29835393146397 Max fold change at or above threshold 4 4.38862291971679 Max fold change at or above threshold 0.462145277287605 -0.636050948544395 -1.00087512464127 1.17478079589806 303.87797164917 157.742963393941 0.51909969826986 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775792_at SPAC9.11.S1 --- 4.38716403978422 --- --- --- --- 1.38896155357361 1.59747207164764 6.09360218048096 5.34296131134033 0.780517995357513 0.5 0.0461426004767418 0.0805663987994194 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9.11 /DEF=hypothetical protein --- --- --- --- --- --- SPAC9.11 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.1318379006279 1.15011971896383 1.78969320052244 4.38716403978422 3.84673088869424 Max fold change at or above threshold 2 4.38716403978422 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1777643_at SPAPB15E9.02c.S1 --- 4.38691621337866 --- --- --- --- 8.76518630981445 4.63402605056763 3.66438698768616 1.99802911281586 0.014160200022161 0.274170011281967 0.432372987270355 0.24609400331974 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB15E9.02c /DEF=sequence orphan --- --- --- --- --- --- SPAPB15E9.02c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.62822316505962 -1.89148403875304 -1.02783749569449 -2.39199253224866 -4.38691621337866 Max fold change at or above threshold 3 4.38691621337866 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1772860_at SPAC22E12.14c.S1 --- 4.3858143294145 --- --- --- --- 1.07661950588226 1.61772227287292 4.72185325622559 2.64642310142517 0.753906011581421 0.753906011581421 0.366210997104645 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22E12.14c /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPAC22E12.14c // |sck2||serine/threonine protein kinase Sck2|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.54802591829949 1.50259424433077 1.26913296023989 4.3858143294145 2.45808578329304 Max fold change at or above threshold 2 4.3858143294145 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778556_at YML003W.S1 Hypothetical protein 4.38535224450007 241.439651489258 64.9833545684814 --- --- --- --- 58.3646965026855 226.929550170898 255.949752807617 71.6020126342773 0.030273400247097 0.000732421991415322 0.00195312988944352 0.018554700538516 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML003W /GEN=GLO1 /DB_XREF=GI:6323640 /SEG=NC_001145:+263483,264355 /DEF=Hypothetical ORF /NOTE=Yml003wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004462 // YML003W SGDID:S0004462, Chr XIII from 263483-264355, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018716 // cdna:Genscan chromosome:SGD1:XIII:263483:264355:1 // ensembl // 11 // --- /// YML003W // cdna:known chromosome:SGD1:XIII:263483:264355:1 gene:YML003W // ensembl // 11 // --- --- No cerevisiae_gene 1.28212494742632 3.88813038992598 3.55121149049131 4.38535224450007 1.22680347752657 Max fold change at or above threshold 4 4.38535224450007 Max fold change at or above threshold -0.923479361651399 0.717758431836234 1.00031468425526 -0.794593754440097 153.21150302887 102.705929839705 0.670353908220273 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1773468_at SPBC1604.12.S1 --- 4.38474943738472 --- --- --- --- 1.13542640209198 4.01173830032349 4.90193748474121 0.258948981761932 0.696289002895355 0.274170011281967 0.129638999700546 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1604.12 /DEF=sequence orphan --- --- --- --- --- --- SPBC1604.12 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.6935800968956 3.53324380420608 1.92514389247182 4.3172657212388 -4.38474943738472 Max fold change at or above threshold 2 4.38474943738472 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777040_at SPAC3A12.12.S1 --- 4.38365019383138 --- --- --- --- 4.48993921279907 1.02424669265747 14.1892261505127 6.83242654800415 0.5 0.870360970497131 0.171387001872063 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A12.12 /GEN=atp11 /DEF=F1 ATPase chaperone (PMID 12206899) --- --- --- --- --- --- SPAC3A12.12 // |atp11||F1 ATPase chaperone |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.12077121223948 -4.38365019383138 2.02690608676536 3.16022678214991 1.52171916459972 Max fold change at or above threshold 3 4.38365019383138 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777935_at SPAC15A10.09c.S1 --- 4.38289843567841 --- --- --- --- 9.06193351745605 7.49771118164063 3.1052508354187 4.5924973487854 0.030273400247097 0.303710997104645 0.303710997104645 0.0952147990465164 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15A10.09c /DEF=sequence orphan --- --- --- --- --- --- SPAC15A10.09c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.87779495411054 -1.20862664590838 -4.38289843567841 -2.91826135721309 -1.97320386474533 Max fold change at or above threshold 4 4.38289843567841 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1776658_at YJL217W.S1 Hypothetical protein 4.38236304352589 2532.88330078125 588.883331298828 --- --- 5737 // cytoplasm // inferred from direct assay --- 610.031921386719 2392.38525390625 2673.38134765625 567.734741210938 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL217W /GEN=HXT9 /DB_XREF=GI:6322244 /SEG=NC_001142:+23133,23729 /DEF=Hypothetical ORF /NOTE=Yjl217wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.1.DNA-binding domain of rap1 // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; DNA-binding domain of rap1 // 0.519999980926514 --- S0003753 // YJL217W SGDID:S0003753, Chr X from 23133-23729, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000023975 // cdna:Genscan chromosome:SGD1:X:23133:23729:1 // ensembl // 10 // --- /// GENEFINDER00000024474 // cdna:GeneFinder chromosome:SGD1:X:23133:23729:1 // ensembl // 10 // --- /// YJL217W // cdna:known chromosome:SGD1:X:23133:23729:1 gene:YJL217W // ensembl // 10 // --- --- No cerevisiae_gene 1.08095889817497 3.92173781409324 1.08255903616724 4.38236304352589 -1.07450165914731 Max fold change at or above threshold 4 4.38236304352589 Max fold change at or above threshold -0.842693143462197 0.736919549948034 0.985952661614364 -0.880179068100202 1560.88331604004 1128.34832231666 0.722890885386153 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773797_s_at SPBC1711.02.S1 --- 4.3781060288737 --- --- --- --- 1.1360456943512 0.837681174278259 0.650587975978851 0.259483367204666 0.633789002895355 0.696289002895355 0.601073980331421 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1711.02 /GEN=matmc /DEF=mating-type m-specific polypeptide mc --- --- --- --- --- --- SPBC1711.02 // |matmc||mating-type m-specific polypeptide mc|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPBC23G7.09 // |matmc||mating-type m-specific polypeptide mc|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.01306960369415 -1.35617909203941 -3.40347610313025 -1.74618304717658 -4.3781060288737 Max fold change at or above threshold 0 4.3781060288737 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779244_at SPAC29B12.01.S1 --- 4.37797159594788 --- --- --- --- 0.421447545289993 0.971366941928864 1.60296857357025 0.327638179063797 0.9912109375 0.919434010982513 0.870360970497131 0.997070014476776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29B12.01 /DEF=SNF2 family --- --- --- --- --- --- SPAC29B12.01 // ||SPAC3G6.12|SNF2 family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.75734227217284 2.30483473633825 4.37797159594788 3.80348299921231 -1.28632000853579 Max fold change at or above threshold 0 4.37797159594788 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778110_at SPAC17G6.06.S1 --- 4.37706450546272 --- --- --- --- 2.38362336158752 0.544571220874786 2.59291338920593 1.14405357837677 0.753906011581421 0.953857004642487 0.805419981479645 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G6.06 /GEN=rps2401 /DEF=40S ribosomal protein (S24) --- --- --- --- --- --- SPAC17G6.06 // |rps2401|rps24-1, rps24|40S ribosomal protein S24|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.64209772862082 -4.37706450546272 -2.93865268752863 1.08780331280149 -2.08348927588646 Max fold change at or above threshold 1 4.37706450546272 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769475_at SPAC17G6.11c.S1 --- 4.37613879770022 --- --- --- --- 2.02301859855652 7.79389619827271 4.58786296844482 5.16660737991333 0.212890625 0.533936023712158 0.274170011281967 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G6.11c /DEF=beta-glucan synthesis-associated protein (predicted) --- --- --- --- --- --- SPAC17G6.11c // |||glucosidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 4.37613879770022 3.8526072888474 -1.02005001820368 2.26783034605732 2.55390997571641 Max fold change at or above threshold 3 4.37613879770022 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777569_at YBR072W.S1 Small heat shock protein with chaperone activity that is regulated by a heat induced transition from an inactive oligomeric (24-mer) complex to an active dimer; induced by heat, upon entry into stationary phase, and during sporulation 4.37558425133554 9443.37573242188 2675.11474609375 HSP26 6457 // protein folding // inferred from direct assay /// 6950 // response to stress // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 51082 // unfolded protein binding // inferred from direct assay 2701.78540039063 11821.8896484375 7064.86181640625 2648.44409179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR072W /GEN=HSP26 /DB_XREF=GI:6319546 /SEG=NC_001134:+381990,382634 /DEF=heat shock protein 26 /NOTE=Hsp26p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 2645298]; go_function: chaperone activity [goid GO:0003754] [evidence IDA] [pmid 10581247]; go_function: heat shock protein activity [goid GO:0003773] [evidence ISS] [pmid 2689876]; go_process: protein folding [goid GO:0006457] [evidence IDA] [pmid 10581247]; go_process: response to stress [goid GO:0006950] [evidence IDA] [pmid 10581247] --- --- --- --- --- --- S0000276 // HSP26 SGDID:S0000276, Chr II from 382027-382671, Verified ORF // sgd // 11 // --- /// GENSCAN00000021196 // cdna:Genscan chromosome:SGD1:II:382027:382671:1 // ensembl // 11 // --- /// GENEFINDER00000022248 // cdna:GeneFinder chromosome:SGD1:II:382027:382671:1 // ensembl // 11 // --- /// YBR072W // cdna:known chromosome:SGD1:II:382027:382671:1 gene:YBR072W // ensembl // 11 // --- --- No cerevisiae_gene -1.32475823774142 4.37558425133554 1.44287645078445 2.61488636935591 -1.02014062096269 Max fold change at or above threshold 4 4.37558425133554 Max fold change at or above threshold -0.769407984184046 1.32058902599782 0.230450835041678 -0.781631876855449 6059.24523925781 4363.69248549943 0.720170964071085 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769552_s_at SPBC1348.01.S1 --- 4.37411883683296 --- --- --- --- 0.790714502334595 1.20922386646271 2.64733028411865 3.45867919921875 0.780517995357513 0.828612983226776 0.696289002895355 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1348.01 /DEF=DUF999 --- --- --- --- --- --- SPAC750.06c // |||DUF999|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPBC1348.01 // ||SPAC1348.01|DUF999|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPBCPT2R1.01c // ||SPBPB2B2.20c|DUF999|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPBCPT2R1.04c // |||DUF999|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPAC212.01c // |||DUF999|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.4556370773138 1.52927999030302 3.45773296342496 3.34802292901215 4.37411883683296 Max fold change at or above threshold 2 4.37411883683296 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776604_at YDL164C.S1 DNA ligase found in the nucleus and mitochondria, an essential enzyme that joins Okazaki fragments during DNA replication; also acts in nucleotide excision repair, base excision repair, and recombination 4.37365695099588 116.474872589111 532.627456665039 CDC9 6266 // DNA ligation // inferred from mutant phenotype /// 6266 // DNA ligation // inferred from direct assay /// 6273 // lagging strand elongation // inferred from mutant phenotype /// 6273 // lagging strand elongation // inferred from direct assay /// 6284 // base-excision repair // inferred from mutant phenotype /// 6289 // nucleotide-excision repair // inferred from mutant phenotype /// 6310 // DNA recombination // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5657 // replication fork // non-traceable author statement /// 5739 // mitochondrion // inferred from direct assay /// 5739 // mitochondrion // inferred from mutant phenotype 3910 // DNA ligase (ATP) activity // inferred from direct assay 497.190216064453 119.271369934082 113.678375244141 568.064697265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL164C /GEN=CDC9 /DB_XREF=GI:6320038 /SEG=NC_001136:-164988,167255 /DEF=DNA ligase found in the nucleus and mitochondria, an essential enzyme that joins Okazaki fragments during DNA replication; also acts in nucleotide excision repair, base excision repair, and recombination /NOTE=Cdc9p; go_component: mitochondrion [goid GO:0005739] [evidence IDA,IMP] [pmid 10531002]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10531002]; go_component: replication fork [goid GO:0005657] [evidence NAS] [pmid 9759502]; go_function: DNA ligase (ATP) activity [goid GO:0003910] [evidence IDA] [pmid 6347688]; go_process: DNA ligation [goid GO:0006266] [evidence IDA,IMP] [pmid 9759502]; go_process: DNA recombination [goid GO:0006310] [evidence IMP] [pmid 9230305]; go_process: base-excision repair [goid GO:0006284] [evidence IMP] [pmid 10052932]; go_process: lagging strand elongation [goid GO:0006273] [evidence IDA,IMP] [pmid 9759502]; go_process: nucleotide-excision repair [goid GO:0006289] [evidence IMP] [pmid 10052932] --- --- --- --- --- --- S0002323 // CDC9 SGDID:S0002323, Chr IV from 167255-164988, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023466 // cdna:GeneFinder chromosome:SGD1:IV:164988:167186:-1 // ensembl // 11 // --- /// GENSCAN00000024979 // cdna:Genscan chromosome:SGD1:IV:164988:167114:-1 // ensembl // 11 // --- /// YDL164C // cdna:known chromosome:SGD1:IV:164988:167255:-1 gene:YDL164C // ensembl // 11 // --- --- No cerevisiae_gene 1.0973682735789 -4.16856296979934 -1.43448191881899 -4.37365695099588 1.14255003198209 Max fold change at or above threshold 4 4.37365695099588 Max fold change at or above threshold 0.713347542615804 -0.84821965756711 -0.871330008236409 1.00620212318772 324.551164627075 242.01254104601 0.745683785556876 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774856_at YDL120W.S1 Yeast Frataxin Homologue; mitochondrial protein that regulates mitochondrial iron accumulation 4.37304360288331 642.828536987305 206.424957275391 YFH1 6800 // oxygen and reactive oxygen species metabolism // inferred from mutant phenotype /// 6879 // iron ion homeostasis // inferred from genetic interaction /// 6879 // iron ion homeostasis // inferred from mutant phenotype /// 6879 // iron ion homeostasis // inferred from direct assay /// 18283 // iron incorporation into metallo-sulfur cluster // inferred from genetic interaction /// 18283 // iron incorporation into metallo-sulfur cluster // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5759 // mitochondrial matrix // inferred from direct assay 30234 // enzyme regulator activity // inferred from mutant phenotype /// 30234 // enzyme regulator activity // inferred from physical interaction 184.618438720703 478.312591552734 807.344482421875 228.231475830078 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL120W /GEN=YFH1 /DB_XREF=GI:6320083 /SEG=NC_001136:+245923,246447 /DEF=Yeast Frataxin Homologue /NOTE=Yfh1p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 10428860]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 9180083]; go_function: enzyme regulator activity [goid GO:0030234] [evidence IMP,IPI] [pmid 12668611]; go_process: iron incorporation into metallo-sulfur cluster [goid GO:0018283] [evidence IGI,IMP] [pmid 12065597]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IGI,IMP] [pmid 11734220]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IDA] [pmid 9180083]; go_process: oxygen and reactive oxygen species metabolism [goid GO:0006800] [evidence IMP] [pmid 12019217] --- --- --- --- --- --- S0002278 // YFH1 SGDID:S0002278, Chr IV from 245923-246447, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023829 // cdna:GeneFinder chromosome:SGD1:IV:245923:246447:1 // ensembl // 11 // --- /// YDL120W // cdna:known chromosome:SGD1:IV:245923:246447:1 gene:YDL120W // ensembl // 11 // --- --- No cerevisiae_gene 2.83899155263252 2.59081701084225 1.22274970630178 4.37304360288331 1.23623337631706 Max fold change at or above threshold 4 4.37304360288331 Max fold change at or above threshold -0.838946971206636 0.187658405962064 1.33778654153795 -0.686497976293383 424.626747131348 286.082811724616 0.67372772360033 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772132_at SPAC6F6.15.S1 --- 4.36960500681455 --- --- --- --- 0.622977793216705 0.942353308200836 2.34338212013245 0.142570734024048 0.753906011581421 0.919434010982513 0.5 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F6.15 /GEN=ypt5 /DEF=GTPase --- --- --- --- --- --- SPAC6F6.15 // |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.33144004501411 1.5126595497651 1.21879788932716 3.7615821071768 -4.36960500681455 Max fold change at or above threshold 0 4.36960500681455 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770824_at YOR341W.S1 RNA polymerase I subunit; largest subunit of RNA polymerase I 4.36694784132132 795.861541748047 539.115142822266 RPA190 6360 // transcription from RNA polymerase I promoter // traceable author statement 5736 // DNA-directed RNA polymerase I complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 517.593811035156 729.687255859375 862.035827636719 560.636474609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR341W /GEN=RPA190 /DB_XREF=GI:6324917 /SEG=NC_001147:+960982,965976 /DEF=RNA polymerase I subunit alpha; largest subunit of RNA polymerase I /NOTE=Rpa190p; go_component: DNA-directed RNA polymerase I complex [goid GO:0005736] [evidence TAS] [pmid 8246845]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 8246845]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS] --- --- --- --- scop // a.4.1.Centromere-binding // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding // 8.0 --- S0005868 // RPA190 SGDID:S0005868, Chr XV from 960982-965976, Verified ORF // sgd // 11 // --- /// GENSCAN00000017793 // cdna:Genscan chromosome:SGD1:XV:960982:965976:1 // ensembl // 11 // --- /// GENEFINDER00000022840 // cdna:GeneFinder chromosome:SGD1:XV:961423:966145:1 // ensembl // 10 // --- /// YOR341W // cdna:known chromosome:SGD1:XV:960982:965976:1 gene:YOR341W // ensembl // 11 // --- --- No cerevisiae_gene 4.36694784132132 1.40976812377266 -1.1048338272147 1.66546780362906 1.08315915425676 Max fold change at or above threshold 4 4.36694784132132 Max fold change at or above threshold -0.944227301555791 0.391808238993952 1.22550866656765 -0.673089604005813 667.488342285156 158.748355404489 0.237829405171349 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776336_s_at SPBCPT2R1.02.S1 --- 4.36481826034487 --- --- --- --- 2.55450367927551 11.1499443054199 3.06397318840027 2.27814865112305 0.108154296875 0.0805663987994194 0.303710997104645 0.45751953125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBCPT2R1.02 /DEF=hypothetical protein --- --- --- --- --- --- SPBCPT2R1.02 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPAC212.02 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.02626753895355 4.36481826034487 -2.09342565793195 1.19943972414604 -1.12130684624826 Max fold change at or above threshold 3 4.36481826034487 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774446_at SPBC19G7.01c.S1 --- 4.36351527179672 --- --- --- --- 3.57947134971619 3.2786922454834 2.35783267021179 0.89236444234848 0.334473013877869 0.303710997104645 0.334473013877869 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19G7.01c /GEN=msh2 /DEF=MutS family --- --- --- --- --- --- SPBC19G7.01c // |msh2|swi8, mut3, SPBC24C6.12c|MutS family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.59494346081713 -1.09173752268061 -4.36351527179672 -1.5181193283723 -4.01122140220638 Max fold change at or above threshold 2 4.36351527179672 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771774_at SPAC823.15.S1 --- 4.36298883242872 --- --- --- --- 8.58012199401855 3.92863178253174 9.72970104217529 6.34972429275513 0.24609400331974 0.633789002895355 0.274170011281967 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC823.15 /GEN=ppa1 /DEF=serinethreonine protein phosphatase (minor) (catalytic subunit) --- --- --- --- --- --- SPAC823.15 // |ppa1||minor serine/threonine protein phosphatase Ppa1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.07977149932588 -2.18399750064875 -4.36298883242872 1.13398166703902 -1.35125898360788 Max fold change at or above threshold 4 4.36298883242872 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776181_at SPBC3E7.02c.S1 --- 4.36198727744901 --- --- --- --- 1.10737466812134 0.674865305423737 1.36113607883453 3.45913290977478 0.805419981479645 0.962401986122131 0.870360970497131 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3E7.02c /GEN=hsp16 /DEF=heat shock protein --- --- --- --- --- --- AJ003817 // Schizosaccharomyces pombe mRNA for heat shock protein 16. // gb // 11 // --- /// SPBC3E7.02c // |hsp16||heat shock protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.52301034065584 -1.64088249791717 4.36198727744901 1.22915587471736 3.12372407402384 Max fold change at or above threshold 1 4.36198727744901 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777998_at SPAC26A3.15c.S1 --- 4.35989741446048 --- --- --- --- 10.0610771179199 2.30764079093933 2.3360641002655 4.17604684829712 0.149657994508743 0.274170011281967 0.149657994508743 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26A3.15c /DEF=nucleoporin --- --- --- --- --- --- SPAC26A3.15c // |||nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.38418223085267 -4.35989741446048 -3.25418293659839 -4.30684976357303 -2.4092347340458 Max fold change at or above threshold 2 4.35989741446048 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779083_at YFL040W.S1 Hypothetical protein 4.35860703275691 14.2321462631226 52.5181694030762 --- --- --- --- 43.1821479797363 18.5569648742676 9.90732765197754 61.854190826416 0.000732421991415322 0.0561522990465164 0.194580003619194 0.000732421991415322 P M A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL040W /GEN=FET5 /DB_XREF=GI:14318478 /SEG=NC_001138:+51350,52972 /DEF=Hypothetical ORF /NOTE=Yfl040wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001854 // span:28-50,65-87,100-119,129-146,158-180,185-207,276-298,313-334,341-362,387-409,422-444,454-476 // numtm:12 S0001854 // YFL040W SGDID:S0001854, Chr VI from 51350-52972, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018552 // cdna:GeneFinder chromosome:SGD1:VI:51389:52972:1 // ensembl // 11 // --- /// GENSCAN00000023207 // cdna:Genscan chromosome:SGD1:VI:52007:52972:1 // ensembl // 11 // --- /// YFL040W // cdna:known chromosome:SGD1:VI:51350:52972:1 gene:YFL040W // ensembl // 11 // --- --- No cerevisiae_gene 1.0538629132431 -2.32700488858584 1.09103333665785 -4.35860703275691 1.43240190032793 Max fold change at or above threshold 4 4.35860703275691 Max fold change at or above threshold 0.414723451683117 -0.626639982268218 -0.992420650036608 1.20433718062171 33.3751578330994 23.6470595208354 0.708522777303056 PPMPAP Called_P_>2EXP 2 0 PMAP 1 2 1 Yes No 1 < x = 2
1769827_at SPCC613.09.S1 --- 4.35798807265085 --- --- --- --- 6.70786333084106 10.3427181243896 8.23326301574707 4.52926301956177 0.171387001872063 0.0561522990465164 0.219482004642487 0.0676269978284836 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC613.09 /DEF=tRNA-splicing endonuclease (subunit) (predicted) --- --- --- --- --- --- SPCC613.09 // |||tRNA-splicing endonuclease |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -2.04645657407061 1.54187967379067 -4.35798807265085 1.22740470544363 -1.48100547525502 Max fold change at or above threshold 4 4.35798807265085 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1777325_at YDR446W.S1 Non-essential protein of unknown function, GFP fusion protein is present in discrete clusters in the nucleus throughout mitosis; may be involved in maintaining chromatin structure 4.3579466598947 34.9672079086304 20.0796689987183 ECM11 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 20.9925937652588 40.5866394042969 29.3477764129639 19.1667442321777 0.014160200022161 0.00415039015933871 0.0461426004767418 0.00585938012227416 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR446W /GEN=ECM11 /DB_XREF=GI:6320654 /SEG=NC_001136:+1353713,1354621 /DEF=Non-essential protein of unknown function, GFP fusion protein is present in discrete clusters in the nucleus throughout mitosis; may be involved in maintaining chromatin structure /NOTE=Ecm11p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11678331]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584] --- --- --- --- --- --- S0002854 // ECM11 SGDID:S0002854, Chr IV from 1353715-1354623, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023959 // cdna:GeneFinder chromosome:SGD1:IV:1353715:1354623:1 // ensembl // 10 // --- /// GENSCAN00000025449 // cdna:Genscan chromosome:SGD1:IV:1353715:1354623:1 // ensembl // 10 // --- /// YDR446W // cdna:known chromosome:SGD1:IV:1353715:1354623:1 gene:YDR446W // ensembl // 10 // --- --- No cerevisiae_gene 4.3579466598947 1.93337897442025 -1.77440501855996 1.39800620833869 -1.09526132925673 Max fold change at or above threshold 4 4.3579466598947 Max fold change at or above threshold -0.668338841769659 1.33683237156595 0.186694980033864 -0.855188509830151 27.5234384536743 9.77175689972297 0.355034016413689 PPPAPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1771206_at YKL165C.S1 Protein involved in glycosylphosphatidylinositol (GPI) anchor synthesis; multimembrane-spanning protein that localizes to the endoplasmic reticulum; highly conserved among eukaryotes 4.35752504899014 84.8017883300781 393.366348266602 MCD4 6506 // GPI anchor biosynthesis // inferred from direct assay /// 15867 // ATP transport // inferred from direct assay 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 366.110961914063 85.5854797363281 84.0180969238281 420.621734619141 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL165C /GEN=MCD4 /DB_XREF=GI:6322683 /SEG=NC_001143:-137937,140696 /DEF=Required for GPI anchor synthesis /NOTE=Mcd4p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 12023081]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 10514566]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ATP transport [goid GO:0015867] [evidence IDA] [pmid 12807869]; go_process: GPI anchor biosynthesis [goid GO:0006506] [evidence IDA] [pmid 12023081] --- --- --- --- --- S0001648 // span:7-29,458-480,492-510,515-534,555-572,576-594,599-616,626-643,656-675,690-708,720-742,819-841,848-870,880-902 // numtm:14 S0001648 // MCD4 SGDID:S0001648, Chr XI from 140696-137937, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022947 // cdna:GeneFinder chromosome:SGD1:XI:137937:140696:-1 // ensembl // 11 // --- /// YKL165C // cdna:known chromosome:SGD1:XI:137937:140696:-1 gene:YKL165C // ensembl // 11 // --- --- No cerevisiae_gene 1.04951610122897 -4.27772284553382 -1.67996062777387 -4.35752504899014 1.14889139735148 Max fold change at or above threshold 4 4.35752504899014 Max fold change at or above threshold 0.707530637468048 -0.854976069431988 -0.863706278672871 1.01115171063681 239.08406829834 179.53553795253 0.750930579483438 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774838_at YPL164C.S1 Protein involved in DNA mismatch repair; forms a complex with Mlh1p to promote meiotic crossing-over; mammalian homolog is implicated mammalian microsatellite instability 4.35590137296281 226.95108795166 827.98583984375 MLH3 6298 // mismatch repair // inferred from mutant phenotype /// 7131 // meiotic recombination // traceable author statement 5634 // nucleus // inferred from physical interaction --- 797.993408203125 183.198226928711 270.703948974609 857.978271484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL164C /GEN=MLH3 /DB_XREF=GI:6325093 /SEG=NC_001148:-239349,241496 /DEF=Mutl Homolog /NOTE=Mlh3p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 10570173]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiotic recombination [goid GO:0007131] [evidence TAS] [pmid 11901110]; go_process: mismatch repair [goid GO:0006298] [evidence IMP] [pmid 9770499] --- --- --- --- --- --- S0006085 // MLH3 SGDID:S0006085, Chr XVI from 241496-239349, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017062 // cdna:Genscan chromosome:SGD1:XVI:239349:241496:-1 // ensembl // 11 // --- /// GENEFINDER00000020807 // cdna:GeneFinder chromosome:SGD1:XVI:239349:241229:-1 // ensembl // 11 // --- /// YPL164C // cdna:known chromosome:SGD1:XVI:239349:241496:-1 gene:YPL164C // ensembl // 11 // --- --- No cerevisiae_gene -2.65101402727593 -4.35590137296281 1.17374749164852 -2.94784546448553 1.07516962253651 Max fold change at or above threshold 4 4.35590137296281 Max fold change at or above threshold 0.773591258152486 -0.984472786585702 -0.734242029540973 0.945123557974189 527.468463897705 349.700105132387 0.662978223471966 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778007_at SPAC26F1.12c.S1 --- 4.35503152327688 --- --- --- --- 1.419060587883 1.1987407207489 0.388517379760742 0.710321068763733 0.725830018520355 0.888427972793579 0.953857004642487 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26F1.12c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC26F1.12c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -4.35503152327688 -1.1837927612874 2.80015940936545 -3.6525022091853 -1.99777347214658 Max fold change at or above threshold 0 4.35503152327688 Max fold change at or above threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1779641_at SPAC3G9.04.S1 --- 4.35377752645038 --- --- --- --- 4.11180019378662 16.7812442779541 15.7011661529541 0.960235178470612 0.432372987270355 0.194580003619194 0.303710997104645 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G9.04 /GEN=ssu72 /DEF=CPF complex (PMID 14617822) --- --- --- --- --- --- SPAC3G9.04 // |ssu72||phosphoprotein phosphatase activity |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.35377752645038 4.08124020795378 -4.2137030852615 3.81856253051407 -4.28207618922645 Max fold change at or above threshold 3 4.35377752645038 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770719_at SPAC26A3.16.S1 --- 4.35292449999321 --- --- --- --- 14.5916795730591 22.3205413818359 3.35215544700623 7.46072769165039 0.466064006090164 0.334473013877869 0.432372987270355 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26A3.16 /GEN=dph1 /DEF=ubiquitin family protein --- --- --- --- --- --- SPAC26A3.16 // |dph1||ubiquitin family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.28273285872604 1.52967595471647 1.0765616906915 -4.35292449999321 -1.95579843898997 Max fold change at or above threshold 4 4.35292449999321 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771555_at SPBC9B6.07.S1 --- 4.35183750954625 --- --- --- --- 6.7345552444458 11.8548316955566 1.71425366401672 3.02915596961975 0.524169921875 0.432372987270355 0.567627012729645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC9B6.07 /DEF=involved in rRNA processing (predicted) --- --- --- --- --- --- SPBC9B6.07 // |||nucleolar protein Nop52 family |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.35183750954625 1.76029912373704 -2.77461073656407 -3.92856400765441 -2.22324479557624 Max fold change at or above threshold 3 4.35183750954625 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772722_at SPBC31F10.17c.S1 --- 4.35106165274046 --- --- --- --- 7.193199634552 12.2747955322266 4.61786222457886 2.57611012458801 0.0805663987994194 0.111571997404099 0.129638999700546 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31F10.17c /DEF=sequence orphan --- --- --- --- --- --- SPBC31F10.17c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.53693965044253 1.7064444413951 -4.35106165274046 -1.55769039540975 -2.79227179222487 Max fold change at or above threshold 4 4.35106165274046 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1777419_at SPAC1B9.03c.S1 --- 4.34943607805574 --- --- --- --- 4.79704761505127 6.0992603302002 5.96392869949341 1.44216418266296 0.24609400331974 0.398925989866257 0.219482004642487 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B9.03c /DEF=RNA-binding protein --- --- --- --- --- --- SPAC1B9.03c // ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.2630608049313 1.27146128611755 -4.34943607805574 1.24324984408763 -3.32628397842574 Max fold change at or above threshold 3 4.34943607805574 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769521_at SPBC15D4.09c.S1 --- 4.34697091931648 --- --- --- --- 2.85034108161926 1.97619032859802 1.31247103214264 4.04120492935181 0.805419981479645 0.850341975688934 0.780517995357513 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC15D4.09c /DEF=cystathionine gamma-synthase (predicted) --- --- --- --- --- --- SPBC15D4.09c // |||cystathionine gamma-synthase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -4.21171377904368 -1.44234137793873 -4.34697091931648 -2.17173637498575 1.41779696311152 Max fold change at or above threshold 2 4.34697091931648 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771476_at SPAC4F10.05c.S1 --- 4.34678643583678 --- --- --- --- 0.903742134571075 1.1553966999054 0.635512053966522 3.20330810546875 0.633789002895355 0.696289002895355 0.65771484375 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F10.05c /DEF=lipoate-protein ligase B (predicted) --- --- --- --- --- --- SPAC4F10.05c // |||lipoate-protein ligase B|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.34678643583678 1.27845837402918 3.93684510578457 -1.42206922580053 3.54449348208056 Max fold change at or above threshold 1 4.34678643583678 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-J01636-1_at AFFX-Sc-J01636-1 --- 4.34566522406813 --- --- --- --- 14.6054992675781 7.76552772521973 3.36093521118164 6.27426624298096 0.432372987270355 0.601073980331421 0.601073980331421 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL J01636 /FEA=CDS_1 /DB_XREF=AAA24052.1 GI:146576 /NOTE=lac repressor protein (gtg start codon) /GEN=lacI --- --- --- --- --- --- AFFX-Sc-J01636-1 // --- // affx // --- // --- --- No No -1.70718351398778 -1.88081219775245 1.03471667209926 -4.34566522406813 -2.32784180682759 Max fold change at or above threshold 4 4.34566522406813 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774840_at YGR157W.S1 First step in the methylation pathway for phosphatidylcholine biosynthesis; Phosphatidyl-ethanolamine N-methyltransferase 4.34475034496933 5431.71557617188 1365.99932861328 CHO2 6656 // phosphatidylcholine biosynthesis // traceable author statement /// 6656 // phosphatidylcholine biosynthesis // inferred from mutant phenotype /// 6656 // phosphatidylcholine biosynthesis // inferred from direct assay 5783 // endoplasmic reticulum // traceable author statement 4608 // phosphatidylethanolamine N-methyltransferase activity // traceable author statement /// 4608 // phosphatidylethanolamine N-methyltransferase activity // inferred from mutant phenotype /// 4608 // phosphatidylethanolamine N-methyltransferase activity // inferred from direct assay 1396.94470214844 6069.3759765625 4794.05517578125 1335.05395507813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR157W /GEN=CHO2 /DB_XREF=GI:6321596 /SEG=NC_001139:+802443,805052 /DEF=First step in the methylation pathway for phosphatidylcholine biosynthesis /NOTE=Cho2p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS]; go_function: phosphatidylethanolamine N-methyltransferase activity [goid GO:0004608] [evidence TAS]; go_process: phosphatidylcholine biosynthesis [goid GO:0006656] [evidence TAS] --- --- --- --- --- S0003389 // span:55-77,87-109,188-210,215-233,366-388,392-411,439-461,533-555 // numtm:8 S0003389 // CHO2 SGDID:S0003389, Chr VII from 802445-805054, Verified ORF // sgd // 11 // --- /// GENSCAN00000019461 // cdna:Genscan chromosome:SGD1:VII:802475:805054:1 // ensembl // 11 // --- /// YGR157W // cdna:known chromosome:SGD1:VII:802445:805054:1 gene:YGR157W // ensembl // 11 // --- --- No cerevisiae_gene -2.43403001144191 4.34475034496933 -1.31682645378237 3.43181456532117 -1.04635823656033 Max fold change at or above threshold 4 4.34475034496933 Max fold change at or above threshold -0.832561453377529 1.11062321946018 0.580238996026092 -0.858300762108739 3398.85745239258 2404.5225035615 0.707450235039682 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771314_at SPAC6F6.03c.S1 --- 4.34336411621817 --- --- --- --- 1.42986106872559 6.21040725708008 0.918710112571716 3.36604905128479 0.633789002895355 0.219482004642487 0.567627012729645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F6.03c /DEF=GTP binding protein associated --- --- --- --- --- --- SPAC6F6.03c // |||GTP binding protein associated|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.31714052655941 4.34336411621817 2.52862918340205 -1.5563789373375 2.35410916830185 Max fold change at or above threshold 2 4.34336411621817 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Bs-thr-M_s_at AFFX-r2-Bs-thr-M --- 4.33991865345336 --- --- --- --- 4.98758697509766 10.5899648666382 1.75157165527344 1.78029298782349 0.567627012729645 0.303710997104645 0.601073980331421 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=thrC, thrB /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 1045-1556 of gb:X04603.1 /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase. --- --- --- --- --- --- AFFX-r2-Bs-thr-M // --- // gb // --- // --- /// X04603 // Bacillus subtilis /REF=X04603 /DEF=B subtilis thrC, thrB genes corresponding to nucleotides 1689-2151 of X04603 /LEN=2073 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-r2-Bs-thr-M // B. subtilis /GEN=thrC, thrB /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 1045-1556 of gb:X04603.1 /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase. // affx // --- // --- /// AFFX-r2-Bs-thr-M // --- // unknown // --- // --- /// AFFX-r2-Bs-thr-M // --- // unknown // --- // --- /// AFFX-r2-Bs-thr-M // --- // unknown // --- // --- /// AFFX-r2-Bs-thr-M // --- // unknown // --- // --- /// AFFX-r2-Bs-thr-M // B. subtilis /GEN=thrC, thrB /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 1045-1556 of gb:X04603.1 /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase. // affx // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-thr-M // --- // unknown // --- // --- /// AFFX-r2-Bs-thr-M // --- // affx // --- // --- /// AFFX-r2-Bs-thr-M // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-thr-M // --- // affx // --- // --- /// AFFX-r2-Bs-thr-M // --- // affx // --- // --- /// AFFX-r2-Bs-thr-M // --- // affx // --- // --- /// AFFX-r2-Bs-thr-M // --- // affx // --- // --- /// AFFX-r2-Bs-thr-M // --- // affx // --- // --- /// AFFX-r2-Bs-thr-M // --- // affx // --- // --- /// AFFX-r2-Bs-thr-M // --- // affx // --- // --- /// AFFX-r2-Bs-thr-M // --- // affx // --- // --- /// AFFX-r2-Bs-thr-M // --- // affx // --- // --- /// AFFX-r2-Bs-thr-M // --- // affx // --- // --- /// AFFX-r2-Bs-thr-M // --- // affx // --- // --- 936665 // gb // 6 // Cross Hyb Matching Probes /// 936660 // gb // 5 // Cross Hyb Matching Probes /// 50812173 // gb // 11 // Negative Strand Matching Probes AFFX_control No -1.07305939445868 2.12326419960443 -4.33991865345336 -2.8474923992299 -2.80155401903553 Max fold change at or above threshold 2 4.33991865345336 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771384_at SPAC26F1.08c.S1 --- 4.33982575918881 --- --- --- --- 1.72944343090057 3.51493358612061 7.50548315048218 0.778480529785156 0.601073980331421 0.753906011581421 0.334473013877869 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26F1.08c /DEF=hypothetical protein --- --- --- --- --- --- SPAC26F1.08c // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.91660990914914 2.03240737645306 -2.55620777040048 4.33982575918881 -2.2215628583259 Max fold change at or above threshold 2 4.33982575918881 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Sp-CC338.15-5_at AFFX-r2-Sp-CC338.15-5 --- 4.33725949040118 --- --- --- --- 9.97624778747559 2.64544200897217 2.30012702941895 8.73593521118164 0.5 0.850341975688934 0.805419981479645 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=SPCC338.15 dolichyl-di-phosphooligosaccharide-protein glycotransferase (oligosaccharyltransferase) (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPCC338.15 // |||dolichyl-di-phosphooligosaccharide-protein glycotransferase subunit |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- AFFX_control No -1.92889397563947 -3.77110809975821 -1.20852157658756 -4.33725949040118 -1.14197822514828 Max fold change at or above threshold 3 4.33725949040118 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1771461_at YLL006W.S1 Mitochondrial outer membrane protein required for normal mitochondrial morphology and mtDNA stability; involved in tethering mitochondria to the actin cytoskeleton and in anchoring mtDNA nucleoids 4.33679303596457 887.544311523438 258.14380645752 MMM1 2 // mitochondrial genome maintenance // inferred from mutant phenotype /// 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype 5741 // mitochondrial outer membrane // inferred from direct assay --- 247.029861450195 703.771240234375 1071.3173828125 269.257751464844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL006W /GEN=MMM1 /DB_XREF=GI:6323023 /SEG=NC_001144:+136585,137865 /DEF=Involved in mechanism by which mitochondrial shape is established or maintained /NOTE=Mmm1p; go_component: mitochondrial outer membrane [goid GO:0005741] [evidence IDA] [pmid 11266455]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitochondrial genome maintenance [goid GO:0000002] [evidence IMP] [pmid 11266455]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence IMP] [pmid 8089172] --- --- --- --- --- S0003929 // span:100-122 // numtm:1 S0003929 // MMM1 SGDID:S0003929, Chr XII from 136585-137865, Verified ORF // sgd // 11 // --- /// GENSCAN00000017732 // cdna:Genscan chromosome:SGD1:XII:136585:137865:1 // ensembl // 11 // --- /// GENEFINDER00000024721 // cdna:GeneFinder chromosome:SGD1:XII:136585:137865:1 // ensembl // 11 // --- /// YLL006W // cdna:known chromosome:SGD1:XII:136585:137865:1 gene:YLL006W // ensembl // 11 // --- --- No cerevisiae_gene 1.71744188107873 2.84893185019361 2.41678402263118 4.33679303596457 1.08998057920674 Max fold change at or above threshold 4 4.33679303596457 Max fold change at or above threshold -0.828516328285055 0.332936097615861 1.26757302511351 -0.771992794444319 572.844058990479 393.250182787206 0.686487319917798 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774470_at YLR065C.S1 Hypothetical protein 4.33583530541691 428.861221313477 1499.55767822266 --- --- --- --- 1461.18615722656 337.002227783203 520.72021484375 1537.92919921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR065C /GEN=RPL22A /DB_XREF=GI:6323094 /SEG=NC_001144:-266374,266919 /DEF=Hypothetical ORF /NOTE=Ylr065cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004055 // span:20-38,43-65,88-110,115-133 // numtm:4 S0004055 // YLR065C SGDID:S0004055, Chr XII from 266919-266374, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YLR065C // cdna:known chromosome:SGD1:XII:266374:266919:-1 gene:YLR065C // ensembl // 11 // --- --- No cerevisiae_gene 1.0766985097874 -4.33583530541691 1.05052440522949 -2.80608686886683 1.05252105737017 Max fold change at or above threshold 4 4.33583530541691 Max fold change at or above threshold 0.797091074762884 -1.00596521158431 -0.711303579436093 0.920177716257515 964.209449768066 623.487984238608 0.646631273307458 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779043_at SPAC13A11.06.S1 --- 4.3333746377426 --- --- --- --- 6.01985263824463 6.26987743377686 4.96735143661499 1.38918352127075 0.466064006090164 0.601073980331421 0.601073980331421 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13A11.06 /DEF=pyruvate decarboxylase (predicted) --- --- --- --- --- --- SPAC13A11.06 // ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.88748044144859 1.04153337474472 1.85006795491893 -1.21188378053373 -4.3333746377426 Max fold change at or above threshold 3 4.3333746377426 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775329_at SPAC26F1.10c.S1 --- 4.32982530414434 --- --- --- --- 2.45299291610718 2.33314776420593 0.72844797372818 3.38114953041077 0.432372987270355 0.567627012729645 0.601073980331421 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26F1.10c /GEN=pyp1 /DEF=phosphoprotein phosphatase activity --- --- --- --- --- --- M63257 // S.pombe protein-tyrosine-phosphatase-like protein (pyp1) mRNA, complete cds. // gb // 11 // --- /// SPAC26F1.10c // |pyp1||phosphoprotein phosphatase activity|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.32982530414434 -1.05136629309976 1.44708550183417 -3.36742362471381 1.37837720941182 Max fold change at or above threshold 1 4.32982530414434 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775439_at YBR026C.S1 2-enoyl thioester reductase, member of the medium chain dehydrogenase/reductase family; localized to in mitochondria, where it has a probable role in fatty acid synthesis 4.32822363046123 1238.181640625 1539.49572753906 ETR1 6633 // fatty acid biosynthesis // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 16631 // enoyl-[acyl-carrier protein] reductase activity // inferred from direct assay 1538.50122070313 1072.72998046875 1403.63330078125 1540.490234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR026C /GEN=ETR1 /DB_XREF=GI:6319500 /SEG=NC_001134:-292839,293981 /DEF=2-enoyl thioester reductase, member of the medium chain dehydrogenase/reductase family; localized to in mitochondria, where it has a probable role in fatty acid synthesis /NOTE=Etr1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11509667]; go_function: enoyl-[acyl-carrier protein] reductase activity [goid GO:0016631] [evidence IDA] [pmid 11509667]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 11509667]; go_process: fatty acid biosynthesis [goid GO:0006633] [evidence IMP] [pmid 11509667] --- --- --- --- --- --- S0000230 // ETR1 SGDID:S0000230, Chr II from 294019-292877, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021160 // cdna:Genscan chromosome:SGD1:II:292877:294019:-1 // ensembl // 11 // --- /// GENEFINDER00000022402 // cdna:GeneFinder chromosome:SGD1:II:292877:294019:-1 // ensembl // 11 // --- /// YBR026C // cdna:known chromosome:SGD1:II:292877:294019:-1 gene:YBR026C // ensembl // 11 // --- --- No cerevisiae_gene -4.32822363046123 -1.43419243305836 1.24570976947335 -1.09608486764086 1.00129282554028 Max fold change at or above threshold 4 4.32822363046123 Max fold change at or above threshold 0.679487634906884 -1.43517516301001 0.0671695090652979 0.688518019037827 1388.83868408203 220.257925137377 0.15859143877675 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779931_at YDL042C.S1 Conserved NAD+ dependent histone deacetylase of the Sirtuin family involved in regulation of lifespan; plays roles in silencing at HML, HMR, telomeres, and the rDNA locus; negatively regulates initiation of DNA replication 4.32695161751457 182.935794830322 568.412475585938 SIR2 183 // chromatin silencing at ribosomal DNA // inferred from mutant phenotype /// 1302 // replicative cell aging // inferred from mutant phenotype /// 1308 // loss of chromatin silencing during replicative cell aging // traceable author statement /// 6303 // double-strand break repair via nonhomologous end-joining // inferred from direct assay /// 6333 // chromatin assembly or disassembly // inferred from direct assay /// 6348 // chromatin silencing at telomere // inferred from physical interaction /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 8156 // negative regulation of DNA replication // inferred from mutant phenotype /// 30466 // chromatin silencing at silent mating-type cassette // inferred from mutant phenotype 783 // nuclear telomere cap complex // inferred from direct assay /// 5677 // chromatin silencing complex // inferred from direct assay /// 5724 // nuclear telomeric heterochromatin // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay /// 30869 // RENT complex // inferred from direct assay 4407 // histone deacetylase activity // traceable author statement /// 42393 // histone binding // traceable author statement 528.486572265625 243.733276367188 122.138313293457 608.33837890625 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL042C /GEN=SIR2 /DB_XREF=GI:6320163 /SEG=NC_001136:-376754,378442 /DEF=regulator of silencing at HML, HMR, telomeres, and rDNA /NOTE=Sir2p; go_component: chromatin silencing complex [goid GO:0005677] [evidence IDA] [pmid 9122169]; go_component: nuclear telomere cap complex [goid GO:0000783] [evidence IDA] [pmid 9710643]; go_component: nuclear telomeric heterochromatin [goid GO:0005724] [evidence IDA] [pmid 9000052]; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 9214640]; go_function: histone binding [goid GO:0042393] [evidence TAS] [pmid 12080091]; go_function: histone deacetylase activity [goid GO:0004407] [evidence TAS] [pmid 11095743]; go_process: chromatin assembly/disassembly [goid GO:0006333] [evidence IDA] [pmid 11553718]; go_process: chromatin silencing at ribosomal DNA [goid GO:0000183] [evidence IMP] [pmid 2647300]; go_process: chromatin silencing at silent mating-type cassette (sensu Fungi) [goid GO:0030466] [evidence IMP] [pmid 11950950]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 11950950]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IPI] [pmid 9000052]; go_process: double-strand break repair via nonhomologous end-joining [goid GO:0006303] [evidence IDA] [pmid 10908335]; go_process: loss of chromatin silencing during replicative cell aging [goid GO:0001308] [evidence TAS] [pmid 10809662] --- --- --- --- --- --- S0002200 // SIR2 SGDID:S0002200, Chr IV from 378442-376754, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023753 // cdna:GeneFinder chromosome:SGD1:IV:376754:378427:-1 // ensembl // 10 // --- /// GENSCAN00000025070 // cdna:Genscan chromosome:SGD1:IV:376754:378442:-1 // ensembl // 10 // --- /// YDL042C // cdna:known chromosome:SGD1:IV:376754:378442:-1 gene:YDL042C // ensembl // 10 // --- --- No cerevisiae_gene -1.30539713515068 -2.16829880655874 1.23139044505865 -4.32695161751457 1.1510952422089 Max fold change at or above threshold 4 4.32695161751457 Max fold change at or above threshold 0.663413797476062 -0.572802763252767 -1.10069026874654 1.01007923452324 375.67413520813 230.342566945194 0.613144598889088 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770338_at SPAC4G8.11c.S1 --- 4.32686732341777 --- --- --- --- 3.46574902534485 14.7937145233154 5.52538728713989 3.67017126083374 0.366210997104645 0.111571997404099 0.533936023712158 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G8.11c /GEN=atp10 /DEF=F1-F0 ATPase assembly potein (predicted) --- --- --- --- --- --- SPAC4G8.11c // |atp10||F1-F0 ATPase assembly potein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.32686732341777 4.26854755353886 1.49910049974529 1.59428373108757 1.05898356574407 Max fold change at or above threshold 4 4.32686732341777 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772713_at SPBC25B2.10.S1 --- 4.32638706824983 --- --- --- --- 1.87720322608948 8.1051197052002 1.2536541223526 2.042729139328 0.59326171875 0.14453125 0.601073980331421 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25B2.10 /DEF=Usp (universal stress protein) domain --- --- --- --- --- --- SPBC25B2.10 // |||Usp |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.2369542828207 4.31765702964643 -4.32638706824983 -1.49738527766074 1.08817687447903 Max fold change at or above threshold 1 4.32638706824983 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773421_at SPAC25G10.02.S1 --- 4.32086871721684 --- --- --- --- 0.755020201206207 1.35051107406616 0.596605062484741 3.26234316825867 0.696289002895355 0.601073980331421 0.567627012729645 0.327392578125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25G10.02 /GEN=cce1 /DEF=cruciform cutting endonuclease --- --- --- --- --- --- SPAC25G10.02 // |cce1|ydc2|cruciform cutting endonuclease Cce1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.46679948278763 1.78870852979643 -1.90827096280848 -1.26552764748877 4.32086871721684 Max fold change at or above threshold 1 4.32086871721684 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771486_at SPAC1006.02.S1 --- 4.32037386238356 --- --- --- --- 12.9832801818848 3.00512886047363 3.79661583900452 4.07163429260254 0.24609400331974 0.5 0.466064006090164 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1006.02 /DEF=WD repeat protein --- --- --- --- --- --- SPAC1006.02 // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.73487165743986 -4.32037386238356 -1.52821801839301 -3.41969815552606 -3.18871471474566 Max fold change at or above threshold 4 4.32037386238356 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776775_at SPAC1782.02c.S1 --- 4.31868088478641 --- --- --- --- 1.19558191299438 3.45858955383301 3.88564109802246 4.15705871582031 0.79931640625 0.466064006090164 0.567627012729645 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1782.02c /DEF=hypothetical protein --- --- --- --- --- --- SPAC1782.02c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.31868088478641 2.89280852800025 -2.53324699963236 3.24999990029183 3.47701706644991 Max fold change at or above threshold 3 4.31868088478641 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771261_at YHR155W.S1 Hypothetical protein 4.31820023010583 167.14811706543 641.997894287109 YSP1 --- 5739 // mitochondrion // inferred from direct assay --- 658.315673828125 152.451400756836 181.844833374023 625.680114746094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR155W /GEN=RTT107 /DB_XREF=GI:6321949 /SEG=NC_001140:+407104,410790 /DEF=Hypothetical ORF /NOTE=Yhr155wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001198 // span:1030-1052,1064-1086 // numtm:2 S0001198 // YHR155W SGDID:S0001198, Chr VIII from 407105-410791, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016682 // cdna:Genscan chromosome:SGD1:VIII:407105:410791:1 // ensembl // 11 // --- /// GENEFINDER00000020118 // cdna:GeneFinder chromosome:SGD1:VIII:409202:410791:1 // ensembl // 11 // --- /// YHR155W // cdna:known chromosome:SGD1:VIII:407105:410791:1 gene:YHR155W // ensembl // 11 // --- --- No cerevisiae_gene -2.56381041077539 -4.31820023010583 -1.05248611236881 -3.62020554344859 -1.05216013472839 Max fold change at or above threshold 4 4.31820023010583 Max fold change at or above threshold 0.923572513727724 -0.917672168092581 -0.810685957822671 0.804785612187527 404.57300567627 274.7403851677 0.679087287864037 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770990_at YER064C.S1 Non-essential nuclear protein; null mutation has global effects on transcription 4.31540599992371 537.602676391602 524.5615234375 --- 45449 // regulation of transcription // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 528.021850585938 475.430145263672 599.775207519531 521.101196289063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER064C /GEN=THO1 /DB_XREF=GI:6320907 /SEG=NC_001137:-282703,284220 /DEF=mutation leads to reduction of ERG9, CYC1-LacZ, and GCN4-LacZ expression /NOTE=Yer064cp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000866 // YER064C SGDID:S0000866, Chr V from 284220-282703, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016858 // cdna:Genscan chromosome:SGD1:V:282703:284220:-1 // ensembl // 11 // --- /// GENEFINDER00000019648 // cdna:GeneFinder chromosome:SGD1:V:282703:284220:-1 // ensembl // 11 // --- /// YER064C // cdna:known chromosome:SGD1:V:282703:284220:-1 gene:YER064C // ensembl // 11 // --- --- No cerevisiae_gene 4.31540599992371 -1.11061920630443 -1.19726847452692 1.13589088567825 -1.01328082596271 Max fold change at or above threshold 4 4.31540599992371 Max fold change at or above threshold -0.0595417310989758 -1.08279207447994 1.33652722447362 -0.194193418894698 531.082099914551 51.396714071451 0.0967773421091025 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775540_at YKL050C.S1 Hypothetical protein 4.31357516410403 102.130004882813 289.166839599609 --- --- --- --- 283.914184570313 91.3190460205078 112.940963745117 294.419494628906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL050C /GEN=SFK1 /DB_XREF=GI:6322801 /SEG=NC_001143:-342497,345265 /DEF=Hypothetical ORF /NOTE=Ykl050cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001533 // YKL050C SGDID:S0001533, Chr XI from 345265-342497, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018379 // cdna:Genscan chromosome:SGD1:XI:342497:345265:-1 // ensembl // 11 // --- /// GENEFINDER00000022967 // cdna:GeneFinder chromosome:SGD1:XI:342497:345142:-1 // ensembl // 11 // --- /// YKL050C // cdna:known chromosome:SGD1:XI:342497:345265:-1 gene:YKL050C // ensembl // 11 // --- --- No cerevisiae_gene -4.31357516410403 -3.10903581391502 1.25333602055185 -2.51382824402884 1.03700170907097 Max fold change at or above threshold 4 4.31357516410403 Max fold change at or above threshold 0.814028544688123 -0.96217477821701 -0.762767241769245 0.910913475298132 195.648422241211 108.43079509321 0.554212468728869 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776432_at SPBC29A3.12.S1 --- 4.31312424782633 --- --- --- --- 4.96401071548462 1.15090835094452 10.1130533218384 4.56520557403564 0.194580003619194 0.850341975688934 0.390625 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A3.12 /GEN=rps902 /DEF=40S ribosomal protein S9 --- --- --- --- --- --- AB029515 // Schizosaccharomyces pombe mRNA for ribosomal protein S9 homolog, partial cds. // gb // 10 // --- /// SPBC29A3.12 // |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.08487157662845 -4.31312424782633 1.93549917221286 2.03727467595748 -1.08735754282724 Max fold change at or above threshold 3 4.31312424782633 Max fold change at or above threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1777470_at SPAC1F7.04.S1 --- 4.31287417065053 --- --- --- --- 12.0143060684204 9.33756446838379 8.61474514007568 7.98097801208496 0.194580003619194 0.219482004642487 0.171387001872063 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F7.04 /GEN=rho1 /DEF=GTPase --- --- --- --- --- --- D38180 // Fission yeast mRNA for GTP binding protein Rho1, complete cds, clone GP24. // gb // 11 // --- /// SPAC1F7.04 // |rho1||Rho family GTPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.37745747384919 -1.28666378787529 -4.31287417065053 -1.39462118415204 -1.5053676441945 Max fold change at or above threshold 4 4.31287417065053 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771194_at SPBC18H10.19.S1 --- 4.31248609621246 --- --- --- --- 8.82771015167236 2.3202850818634 2.52138686180115 2.0470118522644 0.0375977009534836 0.398925989866257 0.274170011281967 0.194580003619194 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18H10.19 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC18H10.19 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.62162432336814 -3.80457997195021 -1.88630885618241 -3.50113276364354 -4.31248609621246 Max fold change at or above threshold 2 4.31248609621246 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1778121_s_at YCR104W.S1 Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme 4.31189756006438 232.432998657227 423.693862915039 PAU3 --- --- --- 366.300750732422 242.952621459961 221.913375854492 481.086975097656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR104W /GEN=PAU3 /DB_XREF=GI:6319948 /SEG=NC_001135:+307797,308171 /DEF=Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /NOTE=Pau3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000701 // span:7-29 // numtm:1 /// S0005921 // span:44-66 // numtm:1 /// S0006203 // span:44-66 // numtm:1 S0000701 // PAU3 SGDID:S0000701, Chr III from 307797-308171, Verified ORF // sgd // 11 // --- /// S0001480 // YIR041W SGDID:S0001480, Chr IX from 433925-434299, Uncharacterized ORF // sgd // 11 // --- /// S0001707 // YKL224C SGDID:S0001707, Chr XI from 2182-1811, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0004944 // YMR325W SGDID:S0004944, Chr XIII from 922639-923013, Uncharacterized ORF // sgd // 11 // --- /// S0005921 // YOR394W SGDID:S0005921, Chr XV from 1082714-1083208, Uncharacterized ORF // sgd // 11 // --- /// S0006203 // YPL282C SGDID:S0006203, Chr XVI from 8427-7933, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022531 // cdna:Genscan chromosome:SGD1:III:307797:308171:1 // ensembl // 11 // --- /// GENEFINDER00000023397 // cdna:GeneFinder chromosome:SGD1:III:307797:310151:1 // ensembl // 11 // --- /// GENSCAN00000016508 // cdna:Genscan chromosome:SGD1:IX:433925:434299:1 // ensembl // 11 // --- /// GENEFINDER00000019048 // cdna:GeneFinder chromosome:SGD1:IX:433925:434299:1 // ensembl // 11 // --- /// GENSCAN00000018249 // cdna:Genscan chromosome:SGD1:XI:1811:2182:-1 // ensembl // 11 // --- /// GENEFINDER00000022961 // cdna:GeneFinder chromosome:SGD1:XI:1811:2182:-1 // ensembl // 11 // --- /// GENSCAN00000018990 // cdna:Genscan chromosome:SGD1:XIII:922639:923013:1 // ensembl // 11 // --- /// GENEFINDER00000021989 // cdna:GeneFinder chromosome:SGD1:XIII:922639:923013:1 // ensembl // 11 // --- /// GENSCAN00000017837 // cdna:Genscan chromosome:SGD1:XV:1082714:1083208:1 // ensembl // 11 // --- /// GENEFINDER00000022880 // cdna:GeneFinder chromosome:SGD1:XV:1082714:1083208:1 // ensembl // 11 // --- /// GENSCAN00000016967 // cdna:Genscan chromosome:SGD1:XVI:7933:8427:-1 // ensembl // 11 // --- /// GENEFINDER00000020853 // cdna:GeneFinder chromosome:SGD1:XVI:7933:8427:-1 // ensembl // 11 // --- /// YCR104W // cdna:known chromosome:SGD1:III:307797:308171:1 gene:YCR104W // ensembl // 11 // --- /// YIR041W // cdna:known chromosome:SGD1:IX:433925:434299:1 gene:YIR041W // ensembl // 11 // --- /// YKL224C // cdna:known chromosome:SGD1:XI:1811:2182:-1 gene:YKL224C // ensembl // 11 // --- /// YMR325W // cdna:known chromosome:SGD1:XIII:922639:923013:1 gene:YMR325W // ensembl // 11 // --- /// YOR394W // cdna:known chromosome:SGD1:XV:1082714:1083208:1 gene:YOR394W // ensembl // 11 // --- /// YPL282C // cdna:known chromosome:SGD1:XVI:7933:8427:-1 gene:YPL282C // ensembl // 11 // --- --- No cerevisiae_gene -4.31189756006438 -1.50770445912965 1.52099630898855 -1.65064746242518 1.31336606363956 Max fold change at or above threshold 4 4.31189756006438 Max fold change at or above threshold 0.317945980133935 -0.707702310967753 -0.8826451044142 1.27240143524802 328.063430786133 120.263574114639 0.366586345288329 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776521_at SPBP8B7.10c.S1 --- 4.31098529121269 --- --- --- --- 1.91664791107178 8.26264095306396 6.56047534942627 1.64151549339294 0.665526986122131 0.129638999700546 0.194580003619194 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.10c /DEF=hypothetical protein --- --- --- --- --- --- SPBP8B7.10c // |||U3 snoRNP protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.52096928000725 4.31098529121269 2.26253874236162 3.42289019883558 -1.16760878516605 Max fold change at or above threshold 2 4.31098529121269 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777241_at YOL121C.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps19Ap and has similarity to rat S19 ribosomal protein /// Protein component of the small (40S) ribosomal subunit; nearly identical to Rps19Bp and has similarity to rat S19 ribosomal protein 4.31094311854717 219.929008483887 873.606597900391 RPS19B /// RPS19A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 848.875061035156 196.911682128906 242.946334838867 898.338134765625 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL121C /GEN=RPS19A /DB_XREF=GI:6324451 /SEG=NC_001147:-92025,92849 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps19Bp and has similarity to rat S19 ribosomal protein /NOTE=Rps19ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0005481 // RPS19A SGDID:S0005481, Chr XV from 92849-92830,92439-92025, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YOL121C // cdna:known chromosome:SGD1:XV:92025:92849:-1 gene:YOL121C // ensembl // 11 // --- GENSCAN00000017371 // ensembl // 8 // Cross Hyb Matching Probes /// GENEFINDER00000022740 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 1.50532374640755 -4.31094311854717 -1.69131180262342 -3.49408465700118 1.05826896795643 Max fold change at or above threshold 4 4.31094311854717 Max fold change at or above threshold 0.798364344221405 -0.924547972328522 -0.802894406026763 0.929078034133881 546.767803192139 378.40775333929 0.692081265813515 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769865_at YMR048W.S1 Protein required for accurate chromosome segregation during meiosis 4.30953647903933 28.5513973236084 98.1469612121582 CSM3 76 // DNA replication checkpoint // inferred from genetic interaction /// 7064 // mitotic sister chromatid cohesion // inferred from genetic interaction /// 7064 // mitotic sister chromatid cohesion // inferred from mutant phenotype /// 45132 // meiotic chromosome segregation // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 88.9144058227539 20.6320114135742 36.4707832336426 107.379516601563 0.000244141003349796 0.018554700538516 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR048W /GEN=CSM3 /DB_XREF=GI:6323692 /SEG=NC_001145:+366980,367933 /DEF=Protein required for accurate chromosome segregation during meiosis /NOTE=Csm3p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA replication checkpoint [goid GO:0000076] [evidence IGI] [pmid 14764870]; go_process: meiotic chromosome segregation [goid GO:0045132] [evidence IMP] [pmid 11470404] --- --- --- --- --- --- S0004651 // CSM3 SGDID:S0004651, Chr XIII from 366980-367933, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021843 // cdna:GeneFinder chromosome:SGD1:XIII:366980:367933:1 // ensembl // 11 // --- /// GENSCAN00000018755 // cdna:Genscan chromosome:SGD1:XIII:367388:367933:1 // ensembl // 10 // --- /// YMR048W // cdna:known chromosome:SGD1:XIII:366980:367933:1 gene:YMR048W // ensembl // 11 // --- --- No cerevisiae_gene 1.29211161754799 -4.30953647903933 1.05624509779273 -2.43796260840197 1.20767288054107 Max fold change at or above threshold 4 4.30953647903933 Max fold change at or above threshold 0.617663156032014 -1.03205894369886 -0.649389704720789 1.06378549238764 63.3491792678833 41.3902404655419 0.653366640955456 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1779158_at YBL075C.S1 ATPase involved in protein folding and the response to stress; plays a role in SRP-dependent cotranslational protein-membrane targeting and translocation; member of the heat shock protein 70 (HSP70) family; localized to the cytoplasm 4.30715578741936 7383.48510742188 2110.23815917969 SSA3 6457 // protein folding // inferred from direct assay /// 6616 // SRP-dependent cotranslational protein-membrane targeting, translocation // inferred from mutant phenotype /// 6950 // response to stress // inferred from mutant phenotype 5829 // cytosol // traceable author statement 16887 // ATPase activity // inferred from genetic interaction 2124.14794921875 9149.0361328125 5617.93408203125 2096.32836914063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL075C /GEN=SSA3 /DB_XREF=GI:6319396 /SEG=NC_001134:-84497,86446 /DEF=heat-inducible cytosolic member of the 70 kDa heat shock protein family /NOTE=Ssa3p; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 11884745]; go_function: heat shock protein activity [goid GO:0003773] [evidence IDA] [pmid 3302682]; go_process: SRP-dependent cotranslational membrane targeting, translocation [goid GO:0006616] [evidence IMP] [pmid 8754838]; go_process: protein folding [goid GO:0006457] [evidence IDA] [pmid 7867784]; go_process: protein-mitochondrial targeting [goid GO:0006626] [evidence IDA] [pmid 12526792]; go_process: response to stress [goid GO:0006950] [evidence IMP] [pmid 3302682] --- --- --- --- --- --- S0000171 // SSA3 SGDID:S0000171, Chr II from 86446-84497, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021081 // cdna:Genscan chromosome:SGD1:II:84497:86446:-1 // ensembl // 11 // --- /// GENEFINDER00000022327 // cdna:GeneFinder chromosome:SGD1:II:84497:86446:-1 // ensembl // 11 // --- /// YBL075C // cdna:known chromosome:SGD1:II:84497:86446:-1 gene:YBL075C // ensembl // 11 // --- --- No cerevisiae_gene -1.91812912683613 4.30715578741936 1.71784010362611 2.64479415574489 -1.01327062138148 Max fold change at or above threshold 4 4.30715578741936 Max fold change at or above threshold -0.778582900428661 1.30683643084074 0.25858793421953 -0.786841464631606 4746.86163330078 3368.57344624195 0.709642223950728 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776696_at SPBC3B9.02c.S1 --- 4.30362978348888 --- --- --- --- 0.710084736347198 1.6218866109848 1.57188367843628 0.476926356554031 0.888427972793579 0.805419981479645 0.753906011581421 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B9.02c /GEN=cwf28 /DEF=G-patch domain --- --- --- --- --- --- SPBC3B9.02c // |cwf28||G-patch domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.02388434049665 2.28407474202033 4.30362978348888 2.21365648066501 -1.48887711192525 Max fold change at or above threshold 0 4.30362978348888 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770834_at YKL089W.S1 Kinetochore protein with homology to human CENP-C, required for structural integrity of the spindle during anaphase spindle elongation, interacts with histones H2A, H2B, and H4, phosphorylated by Ipl1p 4.30348209474971 75.1865081787109 331.871643066406 MIF2 7059 // chromosome segregation // inferred from mutant phenotype /// 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from mutant phenotype 778 // condensed nuclear chromosome kinetochore // traceable author statement /// 5634 // nucleus // traceable author statement 19237 // centromeric DNA binding // traceable author statement 313.215301513672 77.5911865234375 72.7818298339844 350.527984619141 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL089W /GEN=MIF2 /DB_XREF=GI:6322761 /SEG=NC_001143:+273039,274688 /DEF=centromere protein required for normal chromosome segregation and spindle integrity /NOTE=Mif2p; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence TAS] [pmid 10189365]; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 10189365]; go_function: centromeric DNA binding [goid GO:0019237] [evidence TAS] [pmid 11070082]; go_process: mitotic spindle assembly (sensu Fungi) [goid GO:0030472] [evidence IMP] [pmid 8408221] --- --- --- --- --- --- S0001572 // MIF2 SGDID:S0001572, Chr XI from 273039-274688, Verified ORF // sgd // 11 // --- /// GENSCAN00000018351 // cdna:Genscan chromosome:SGD1:XI:273039:274688:1 // ensembl // 11 // --- /// GENEFINDER00000023162 // cdna:GeneFinder chromosome:SGD1:XI:273171:274688:1 // ensembl // 11 // --- /// YKL089W // cdna:known chromosome:SGD1:XI:273039:274688:1 gene:YKL089W // ensembl // 11 // --- --- No cerevisiae_gene -1.08835072343649 -4.0367381341573 -1.32652589997921 -4.30348209474971 1.11912790634796 Max fold change at or above threshold 4 4.30348209474971 Max fold change at or above threshold 0.736193705073049 -0.845271869204431 -0.877551383714677 0.986629547846059 203.529075622559 148.99098584418 0.732037844659019 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777660_at YDR180W.S1 Putative protein kinase and subunit of cohesin loading factor (Scc2p-Scc4p), a complex required for the loading of cohesin complexes onto chromosomes; involved in establishing sister chromatid cohesion during DSB repair via histone H2AX 4.30320916838023 89.4541320800781 335.010772705078 SCC2 724 // double-strand break repair via homologous recombination // inferred from mutant phenotype /// 7064 // mitotic sister chromatid cohesion // traceable author statement /// 7064 // mitotic sister chromatid cohesion // inferred from mutant phenotype 798 // nuclear cohesin complex // traceable author statement 4672 // protein kinase activity // inferred from sequence similarity 304.171508789063 108.223457336426 70.6848068237305 365.850036621094 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR180W /GEN=SCC2 /DB_XREF=GI:6320386 /SEG=NC_001136:+821288,825769 /DEF=Sister chromatid cohesion protein /NOTE=Scc2p; go_component: nuclear cohesin complex [goid GO:0000798] [evidence TAS] [pmid 10429180]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 11276426]; go_process: mitotic sister chromatid cohesion [goid GO:0007064] [evidence TAS] [pmid 10429180]; go_process: mitotic sister chromatid cohesion [goid GO:0007064] [evidence IMP] [pmid 9335333] --- --- --- --- --- --- S0002588 // SCC2 SGDID:S0002588, Chr IV from 821290-825771, Verified ORF // sgd // 11 // --- /// GENSCAN00000025235 // cdna:Genscan chromosome:SGD1:IV:821290:825771:1 // ensembl // 11 // --- /// GENEFINDER00000023412 // cdna:GeneFinder chromosome:SGD1:IV:822097:825771:1 // ensembl // 11 // --- /// YDR180W // cdna:known chromosome:SGD1:IV:821290:825771:1 gene:YDR180W // ensembl // 11 // --- --- No cerevisiae_gene -1.13573096038743 -2.81058761450864 -1.91792097515 -4.30320916838023 1.20277549359432 Max fold change at or above threshold 4 4.30320916838023 Max fold change at or above threshold 0.634919867648224 -0.718273386345111 -0.977510711040177 1.06086422973707 212.232452392578 144.804188813671 0.682290512978754 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776200_x_at SPCC794.02.S1 --- 4.30202151607087 --- --- --- --- 0.542442619800568 0.55162787437439 0.126090168952942 1.93419051170349 0.780517995357513 0.828612983226776 0.888427972793579 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC794.02 /GEN=wtf5 /DEF=wtf element --- --- --- --- --- --- SPCC794.02 // |wtf5||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- SPCC1183.10 // sanger // 1 // Cross Hyb Matching Probes /// SPCC553.05c // sanger // 1 // Cross Hyb Matching Probes No No -3.55050099791892 1.01693313585352 2.40665765854562 -4.30202151607087 3.5657052766514 Max fold change at or above threshold 0 4.30202151607087 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771144_at SPBC11B10.10c.S1 --- 4.30008356625683 --- --- --- --- 1.38700950145721 1.35634183883667 0.892488360404968 3.5334894657135 0.633789002895355 0.601073980331421 0.567627012729645 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11B10.10c /GEN=pht1 /DEF=histone H2A variant --- --- --- --- --- --- SPBC11B10.10c // |pht1||histone H2A variant|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.30008356625683 -1.02261057039046 1.62014164235584 -1.55409253833614 2.54755966848184 Max fold change at or above threshold 1 4.30008356625683 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779389_at YPL018W.S1 Outer kinetochore protein, required for accurate mitotic chromosome segregation; forms a complex with Mcm21p and Okp1p that binds to centromeres via the CBF3 complex 4.29966991147519 82.5314865112305 54.1602210998535 CTF19 7059 // chromosome segregation // inferred from genetic interaction /// 7059 // chromosome segregation // inferred from mutant phenotype /// 8608 // attachment of spindle microtubules to kinetochore // inferred from direct assay /// 8608 // attachment of spindle microtubules to kinetochore // inferred from genetic interaction /// 8608 // attachment of spindle microtubules to kinetochore // inferred from mutant phenotype 778 // condensed nuclear chromosome kinetochore // inferred from genetic interaction /// 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 817 // COMA complex // inferred from direct assay /// 5634 // nucleus // inferred from direct assay 5515 // protein binding // traceable author statement 42.2670669555664 82.3983917236328 82.6645812988281 66.0533752441406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL018W /GEN=CTF19 /DB_XREF=GI:6325239 /SEG=NC_001148:+517647,518756 /DEF=Outer kinetochore protein, required for accurate mitotic chromosome segregation; forms a complex with Mcm21p and Okp1p that binds to centromeres via the CBF3 complex /NOTE=Ctf19p; go_component: COMA complex [goid GO:0000817] [evidence IDA] [pmid 14633972]; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IDA,IGI] [pmid 10189365]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10189365]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 10189365]; go_process: chromosome segregation [goid GO:0007059] [evidence IGI,IMP] [pmid 10189365]; go_process: microtubule/kinetochore interaction [goid GO:0008608] [evidence IDA,IGI,IMP] [pmid 10189365] --- --- --- --- --- --- S0005939 // CTF19 SGDID:S0005939, Chr XVI from 517649-518758, Verified ORF // sgd // 11 // --- /// YPL018W // cdna:known chromosome:SGD1:XVI:517649:518758:1 gene:YPL018W // ensembl // 11 // --- S0005938 // sgd // 1 // Negative Strand Matching Probes /// GENSCAN00000017171 // ensembl // 1 // Negative Strand Matching Probes /// GENEFINDER00000020902 // ensembl // 1 // Negative Strand Matching Probes /// YPL017C // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene 4.29966991147519 1.94947030060673 1.52447053977515 1.95576810157492 1.56276221658767 Max fold change at or above threshold 4 4.29966991147519 Max fold change at or above threshold -1.36949936498777 0.737953872854707 0.751932531305865 -0.120387039172805 68.345853805542 19.0425695087551 0.278620698234821 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775095_at YCR089W.S1 Cell wall adhesin, expressed specifically during mating; may be involved in maintenance of cell wall integrity during mating 4.29921800335437 207.607398986816 837.701843261719 FIG2 753 // cellular morphogenesis during conjugation with cellular fusion // inferred from mutant phenotype /// 755 // cytogamy // inferred from mutant phenotype 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 823.420166015625 191.527893066406 223.686904907227 851.983520507813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR089W /GEN=FIG2 /DB_XREF=GI:10383809 /SEG=NC_001135:+267430,272259 /DEF=Cell wall adhesin, expressed specifically during mating; may be involved in maintenance of cell wall integrity during mating /NOTE=Fig2p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 9456310]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cellular morphogenesis during conjugation with cellular fusion [goid GO:0000753] [evidence IMP] [pmid 9456310]; go_process: cytogamy [goid GO:0000755] [evidence IMP] [pmid 9456310] --- --- --- --- --- --- S0000685 // FIG2 SGDID:S0000685, Chr III from 267430-272259, Verified ORF // sgd // 11 // --- /// GENSCAN00000022521 // cdna:Genscan chromosome:SGD1:III:267430:272259:1 // ensembl // 11 // --- /// GENEFINDER00000023301 // cdna:GeneFinder chromosome:SGD1:III:271459:272259:1 // ensembl // 11 // --- /// YCR089W // cdna:known chromosome:SGD1:III:267430:272259:1 gene:YCR089W // ensembl // 11 // --- --- No cerevisiae_gene -2.98088463511334 -4.29921800335437 -1.12730673788689 -3.68112816598332 1.03468867495728 Max fold change at or above threshold 4 4.29921800335437 Max fold change at or above threshold 0.825805377503528 -0.909167413987212 -0.820869118639113 0.904231155122797 522.654621124268 364.208750735669 0.696844026658044 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778036_at SPBC14F5.06.S1 --- 4.29832128247608 --- --- --- --- 2.40268659591675 2.42509078979492 3.49052405357361 0.559039354324341 0.665526986122131 0.601073980331421 0.432372987270355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14F5.06 /DEF=iron-sulfur protein --- --- --- --- --- --- SPBC14F5.06 // |||iron-sulfur protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.29832128247608 1.00932464263806 2.64283512797395 1.45275878240033 -4.29788453591188 Max fold change at or above threshold 1 4.29832128247608 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778747_at SPCC736.11.S1 --- 4.29558220470382 --- --- --- --- 0.828460097312927 2.365070104599 0.760428130626678 1.47928130626678 0.7470703125 0.665526986122131 0.870360970497131 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC736.11 /GEN=ago1 /DEF=argonaute --- --- --- --- --- --- SPCC736.11 // |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.29558220470382 2.85477853703515 -2.27877785699278 -1.0894653471462 1.78557942750021 Max fold change at or above threshold 0 4.29558220470382 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769427_at SPCC1259.01c.S1 --- 4.29534228709245 --- --- --- --- 0.604352593421936 1.34933042526245 0.736166656017303 2.59590125083923 0.805419981479645 0.725830018520355 0.780517995357513 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1259.01c /GEN=rps1802 /DEF=40S ribosomal protein S18 --- --- --- --- --- --- SPCC1259.01c // |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein S18|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.24790451912985 2.23268740789601 2.12276423133071 1.21810787945662 4.29534228709245 Max fold change at or above threshold 1 4.29534228709245 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778655_at YLR133W.S1 Choline kinase, catalyzes the first step in the CDP-choline pathway phophatidylcholine synthesis (Kennedy pathway); mRNA expression is regulated by inositol and choline, enzyme activity is stimulated by phophorylation by protein kinase 4.29388716158561 1125.5617980957 360.336456298828 CKI1 6656 // phosphatidylcholine biosynthesis // traceable author statement 5829 // cytosol // traceable author statement 4103 // choline kinase activity // traceable author statement /// 4103 // choline kinase activity // inferred from direct assay 323.918731689453 860.253112792969 1390.87048339844 396.754180908203 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR133W /GEN=CKI1 /DB_XREF=GI:6323162 /SEG=NC_001144:+408446,410194 /DEF=choline kinase /NOTE=Cki1p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: choline kinase activity [goid GO:0004103] [evidence TAS]; go_process: phosphatidylcholine biosynthesis [goid GO:0006656] [evidence TAS] --- --- --- --- --- --- S0004123 // CKI1 SGDID:S0004123, Chr XII from 408446-410194, Verified ORF // sgd // 11 // --- /// GENSCAN00000017922 // cdna:Genscan chromosome:SGD1:XII:408446:410194:1 // ensembl // 11 // --- /// GENEFINDER00000024652 // cdna:GeneFinder chromosome:SGD1:XII:408446:410194:1 // ensembl // 11 // --- /// YLR133W // cdna:known chromosome:SGD1:XII:408446:410194:1 gene:YLR133W // ensembl // 11 // --- --- No cerevisiae_gene -1.76436817625182 2.65576834135579 1.53533159308091 4.29388716158561 1.22485716969458 Max fold change at or above threshold 4 4.29388716158561 Max fold change at or above threshold -0.850046087604146 0.237963152756878 1.31437485160599 -0.702291916758717 742.949127197266 492.950207780909 0.66350465965353 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778829_at SPBC428.05c.S1 --- 4.29285624504944 --- --- --- --- 6.88068675994873 1.60282254219055 6.38298749923706 7.00065803527832 0.274170011281967 0.753906011581421 0.24609400331974 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC428.05c /DEF=argininosuccinate synthase (predicted) --- --- --- --- --- --- SPBC428.05c // |||argininosuccinate synthase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.47477484659316 -4.29285624504944 -1.86739430684541 -1.07797277697491 1.01743594491584 Max fold change at or above threshold 3 4.29285624504944 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776943_at SPAC23H4.02.S1 --- 4.29252696950233 --- --- --- --- 2.31578373908997 8.38624286651611 9.94056415557861 1.87332963943481 0.398925989866257 0.111571997404099 0.0239257998764515 0.366210997104645 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H4.02 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPAC23H4.02 // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.01911430623096 3.62134111443915 1.16883135468271 4.29252696950233 -1.23618592816833 Max fold change at or above threshold 2 4.29252696950233 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1771350_at SPCPJ732.01.S1 --- 4.29166804084079 --- --- --- --- 12.2859401702881 3.80884742736816 13.9378786087036 5.58246278762817 0.274170011281967 0.533936023712158 0.149657994508743 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCPJ732.01 /GEN=vps5 /DEF=retromer complex (predicted) --- --- --- --- --- --- SPCPJ732.01 // |vps5||sorting nexin |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.0121604120357 -3.22563200668225 -4.29166804084079 1.13445763332061 -2.20081004346614 Max fold change at or above threshold 4 4.29166804084079 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775113_at SPBC947.07.S1 --- 4.29049643958359 --- --- --- --- 0.299984723329544 1.28708338737488 0.313739955425262 0.157071098685265 0.5927734375 0.77392578125 0.994140982627869 0.688720703125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC947.07 /DEF=involved in ribosome biogenesis and assembly (predicted) --- --- --- --- --- --- SPBC947.07 // |||surf-like|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.33140496993703 4.29049643958359 -1.23933325712022 1.04585310859516 -1.90986582407911 Max fold change at or above threshold 0 4.29049643958359 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778362_at SPBC16A3.04.S1 --- 4.29032286199215 --- --- --- --- 1.31940650939941 0.30753082036972 5.65422058105469 0.429017603397369 0.533936023712158 0.828612983226776 0.219482004642487 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16A3.04 /DEF=conserved yeast protein --- --- --- --- --- --- SPBC16A3.04 // |rsm25||mitochondrial small ribosomal subunit Rsm25|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.33699868015711 -4.29032286199215 -1.19144034775296 4.28542722866242 -3.07541345378628 Max fold change at or above threshold 1 4.29032286199215 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775048_at SPCC61.02.S1 --- 4.28930657208899 --- --- --- --- 8.99798774719238 3.77674984931946 4.77859926223755 9.67284774780273 0.274170011281967 0.633789002895355 0.432372987270355 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC61.02 /GEN=spt3 /DEF=transcription initiation factor activity --- --- --- --- --- --- SPCC61.02 // |spt3||transcription initiation factor activity|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.28930657208899 -2.38246855264024 -1.49023591189245 -1.88297600476737 1.07500121355699 Max fold change at or above threshold 4 4.28930657208899 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779166_at SPCC364.05.S1 --- 4.28641082933217 --- --- --- --- 1.59564924240112 6.83960819244385 2.52683973312378 4.71827268600464 0.828612983226776 0.466064006090164 0.466064006090164 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC364.05 /GEN=vps3 /DEF=CNH domain --- --- --- --- --- --- SPCC364.05 // |vps3||CNH domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.34935006217366 4.28641082933217 -3.58795835239578 1.58358094371756 2.95696106677218 Max fold change at or above threshold 3 4.28641082933217 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778175_at SPAC19A8.07c.S1 --- 4.28636894539371 --- --- --- --- 14.9181909561157 12.5003747940063 3.48037958145142 15.5885858535767 0.303710997104645 0.366210997104645 0.533936023712158 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19A8.07c /DEF=ribonucleoprotein (RNP) complex (predicted) (PMID 12068309) --- --- --- --- --- --- SPAC19A8.07c // |||U3 snoRNP protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.33263099014289 -1.1934194935714 1.27834653222234 -4.28636894539371 1.04493808260217 Max fold change at or above threshold 4 4.28636894539371 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772074_at SPBC30D10.05c.S1 --- 4.28617793826637 --- --- --- --- 1.45494365692139 5.77004289627075 3.37308502197266 1.00612044334412 0.696289002895355 0.432372987270355 0.567627012729645 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30D10.05c /DEF=short chain dehydrogenase (predicted) --- --- --- --- --- --- SPBC30D10.05c // |||short chain dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.24779380905766 3.96581879224105 4.28617793826637 2.31836126844251 -1.4460929270908 Max fold change at or above threshold 2 4.28617793826637 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769986_at YDL223C.S1 Substrate of the Hub1p ubiquitin-like protein that localizes to the shmoo tip (mating projection); mutants are defective for mating projection formation, thereby implicating Hbt1p in polarized cell morphogenesis 4.28010330890352 3037.76416015625 5714.90283203125 HBT1 753 // cellular morphogenesis during conjugation with cellular fusion // inferred from mutant phenotype 5937 // mating projection // inferred from direct assay --- 6241.427734375 2891.82763671875 3183.70068359375 5188.3779296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL223C /GEN=HBT1 /DB_XREF=GI:6319978 /SEG=NC_001136:-57266,60406 /DEF=Substrate of the Hub1p ubiquitin-like protein that localizes to the shmoo tip (mating projection); mutants are defective for mating projection formation, thereby implicating Hbt1p in polarized cell morphogenesis /NOTE=Hbt1p; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 11923536]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cellular morphogenesis during conjugation with cellular fusion [goid GO:0000753] [evidence IMP] [pmid 11923536] --- --- --- --- --- --- S0002382 // HBT1 SGDID:S0002382, Chr IV from 60406-57266, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023842 // cdna:GeneFinder chromosome:SGD1:IV:57266:60406:-1 // ensembl // 11 // --- /// GENSCAN00000024936 // cdna:Genscan chromosome:SGD1:IV:57266:60400:-1 // ensembl // 11 // --- /// YDL223C // cdna:known chromosome:SGD1:IV:57266:60406:-1 gene:YDL223C // ensembl // 11 // --- --- No cerevisiae_gene -4.28010330890352 -2.15829866729433 -1.13318825741434 -1.96043169715618 -1.20296320332835 Max fold change at or above threshold 4 4.28010330890352 Max fold change at or above threshold 1.15935167689085 -0.922776083961701 -0.741346374197756 0.504770781268603 4376.33349609375 1608.73898356973 0.36759972360554 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771532_at SPBC947.03c.S1 --- 4.27972655250403 --- --- --- --- 3.35341453552246 0.783558130264282 8.81858253479004 2.97388648986816 0.398925989866257 0.753906011581421 0.0107421996071935 0.24609400331974 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC947.03c /DEF=dubious --- --- --- --- --- --- SPBC947.03c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.15814183697676 -4.27972655250403 -4.24986835528444 2.62973230460341 -1.1276202191803 Max fold change at or above threshold 3 4.27972655250403 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1773394_at SPAC26F1.14c.S1 --- 4.2794267796388 --- --- --- --- 5.15032386779785 22.040433883667 12.2310857772827 4.16715621948242 0.466064006090164 0.334473013877869 0.5 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26F1.14c /DEF=flavoprotein (predicted) --- --- --- --- --- --- SPAC26F1.14c // ||SPAC29A4.01c|flavoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.63148667604331 4.2794267796388 -2.44379835665434 2.37481876698221 -1.23593251525318 Max fold change at or above threshold 4 4.2794267796388 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775900_at SPBC839.02.S1 --- 4.27710884035263 --- --- --- --- 5.89197158813477 7.6025562286377 1.49027514457703 7.29923057556152 0.129638999700546 0.129638999700546 0.398925989866257 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC839.02 /DEF=arrestin family --- --- --- --- --- --- SPBC839.02 // |||arrestin family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.27710884035263 1.29032465871826 -1.20580051609022 -3.95361327039178 1.23884347817642 Max fold change at or above threshold 3 4.27710884035263 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1777975_at YDR421W.S1 Zinc finger transcriptional activator of the Zn2Cys6 family; activates transcription of aromatic amino acid catabolic genes in the presence of aromatic amino acids 4.27692560680604 113.247184753418 419.541854858398 ARO80 9074 // aromatic amino acid family catabolism // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 5634 // nucleus // inferred from curator 3704 // specific RNA polymerase II transcription factor activity // inferred from mutant phenotype /// 3704 // specific RNA polymerase II transcription factor activity // inferred from sequence similarity 395.670013427734 101.342178344727 125.152191162109 443.413696289063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR421W /GEN=ARO80 /DB_XREF=GI:6320629 /SEG=NC_001136:+1312028,1314880 /DEF=Zinc finger transcriptional activator of the Zn2Cys6 family; activates transcription of aromatic amino acid catabolic genes in the presence of aromatic amino acids /NOTE=Aro80p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 10207060]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IMP,ISS] [pmid 10207060]; go_process: aromatic amino acid family catabolism [goid GO:0009074] [evidence IMP] [pmid 10207060]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IMP] [pmid 10207060] --- --- --- --- --- --- S0002829 // ARO80 SGDID:S0002829, Chr IV from 1312030-1314882, Verified ORF // sgd // 11 // --- /// GENSCAN00000025433 // cdna:Genscan chromosome:SGD1:IV:1312030:1314882:1 // ensembl // 11 // --- /// GENEFINDER00000023604 // cdna:GeneFinder chromosome:SGD1:IV:1312414:1314882:1 // ensembl // 11 // --- /// YDR421W // cdna:known chromosome:SGD1:IV:1312030:1314882:1 gene:YDR421W // ensembl // 11 // --- --- No cerevisiae_gene -4.27692560680604 -3.90429749873561 1.58979338334626 -3.1615108753088 1.12066540612395 Max fold change at or above threshold 4 4.27692560680604 Max fold change at or above threshold 0.725551127426821 -0.926346588023226 -0.792714287269957 0.993509747866362 266.394519805908 178.175580927431 0.668841014662191 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777503_at SPBC19C2.02.S1 --- 4.27635262052796 --- --- --- --- 1.4051411151886 1.34793281555176 4.3645281791687 2.74542331695557 0.601073980331421 0.567627012729645 0.0561522990465164 0.432372987270355 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C2.02 /GEN=pmt1 /DEF=DNA methyltransferase --- --- --- --- --- --- SPBC19C2.02 // |pmt1||DNA methyltransferase homolog|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.81531271007195 -1.04244150671072 -4.27635262052796 3.10611377888753 1.95384170833765 Max fold change at or above threshold 2 4.27635262052796 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1779617_at SPBC4B4.07c.S1 --- 4.27443639436541 --- --- --- --- 4.90649604797363 6.60476016998291 1.37985908985138 3.59784603118896 0.274170011281967 0.171387001872063 0.696289002895355 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4B4.07c /DEF=small nuclear ribonucleoprotein (snRNP) (predicted) --- --- --- --- --- --- SPBC4B4.07c // |||small nuclear ribonucleoprotein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.27443639436541 1.34612564759135 -1.78722340674705 -3.55579499679355 -1.36373152309472 Max fold change at or above threshold 3 4.27443639436541 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778600_at SPCC1840.09.S1 --- 4.27420107284154 --- --- --- --- 0.900235295295715 1.77387988567352 0.405707061290741 0.365612268447876 0.725830018520355 0.601073980331421 0.5 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1840.09 /DEF=conserved fungal protein --- --- --- --- --- --- SPCC1840.09 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 4.27420107284154 1.97046249457574 -1.53701994973767 -2.21892932410802 -2.46226774368776 Max fold change at or above threshold 0 4.27420107284154 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772175_at SPCC569.06.S1 --- 4.27252739222907 --- --- --- --- 1.22675919532776 1.73723018169403 4.38861656188965 0.587896585464478 0.696289002895355 0.696289002895355 0.533936023712158 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC569.06 /DEF=similar to S. pombe SPCC61.05 and SPAC26H5.07C --- --- --- --- --- --- SPCC569.06 // |||similar to S. pombe SPCC61.05 and SPAC26H5.07C|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.16944413572313 1.41611343800026 -4.27252739222907 3.57740669774814 -2.08669215923161 Max fold change at or above threshold 1 4.27252739222907 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771149_at SPAC343.01c.S1 --- 4.2711798426674 --- --- --- --- 2.26118850708008 9.65794277191162 2.57860779762268 4.56673145294189 0.559326171875 0.665526986122131 0.633789002895355 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC343.01c /DEF=phosphomevalonate kinase activity (predicted) --- --- --- --- --- --- SPAC343.01c // |erg8||phosphomevalonate kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.76026474592455 4.2711798426674 1.0293418087007 1.14037719082187 2.01961554228799 Max fold change at or above threshold 3 4.2711798426674 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776635_at YGR146C-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 4.2708103206343 104.62963104248 68.1235427856445 --- --- --- --- 71.2858047485352 97.1087188720703 112.150543212891 64.9612808227539 0.00585938012227416 0.00415039015933871 0.00585938012227416 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR146C-A /GEN=THI4 /DB_XREF=GI:33438797 /SEG=NC_001139:-785279,785440 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ygr146c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028638 // span:13-35 // numtm:1 S0028638 // YGR146C-A SGDID:S0028638, Chr VII from 785442-785281, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YGR146C-A // cdna:known chromosome:SGD1:VII:785281:785442:-1 gene:YGR146C-A // ensembl // 11 // --- --- No cerevisiae_gene 4.2708103206343 1.36224482861107 -1.38853977313933 1.57325211672237 -1.09735836248423 Max fold change at or above threshold 4 4.2708103206343 Max fold change at or above threshold -0.68270279761024 0.485518671708834 1.16600663091469 -0.968822505013284 86.3765869140625 22.1044680325783 0.255908097579387 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1777980_at YOL149W.S1 Decapping enzyme, essential phosphoprotein component of mRNA decapping complex, plays key role in mRNA decay by cleaving off the 5' cap to leave the end susceptible to exonucleolytic degradation; regulated by DEAD box protein Dhh1p 4.27076670651643 149.984260559082 540.366943359375 DCP1 290 // deadenylylation-dependent decapping // inferred from direct assay /// 6402 // mRNA catabolism // traceable author statement 932 // cytoplasmic mRNA processing body // inferred from direct assay /// 932 // cytoplasmic mRNA processing body // inferred from mutant phenotype 3729 // mRNA binding // inferred from physical interaction /// 16787 // hydrolase activity // inferred from direct assay 520.137756347656 121.790252685547 178.178268432617 560.596130371094 0.000244141003349796 0.00415039015933871 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL149W /GEN=DCP1 /DB_XREF=GI:6324423 /SEG=NC_001147:+44936,45631 /DEF=Decapping enzyme, essential phosphoprotein component of mRNA decapping complex, plays key role in mRNA decay by cleaving off the 5' cap to leave the end susceptible to exonucleolytic degradation; regulated by DEAD box protein Dhh1p /NOTE=Dcp1p; go_component: cytoplasmic mRNA processing body [goid GO:0000932] [evidence IDA,IMP] [pmid 12730603]; go_function: hydrolase activity [goid GO:0016787] [evidence IDA] [pmid 9482745]; go_function: mRNA binding [goid GO:0003729] [evidence IPI] [pmid 11139489]; go_process: deadenylation-dependent decapping [goid GO:0000290] [evidence IDA] [pmid 11139489]; go_process: mRNA catabolism [goid GO:0006402] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0005509 // DCP1 SGDID:S0005509, Chr XV from 44936-45631, Verified ORF // sgd // 11 // --- /// GENSCAN00000017351 // cdna:Genscan chromosome:SGD1:XV:44936:45631:1 // ensembl // 11 // --- /// YOL149W // cdna:known chromosome:SGD1:XV:44936:45631:1 gene:YOL149W // ensembl // 11 // --- --- No cerevisiae_gene -1.46028223992707 -4.27076670651643 -1.14962658444118 -2.91919862575362 1.07778395921021 Max fold change at or above threshold 4 4.27076670651643 Max fold change at or above threshold 0.770210813442064 -0.983377303374711 -0.73514842422799 0.948314914160638 345.175601959229 227.161384045653 0.65810382528857 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778127_at SPAC29E6.10c.S1 --- 4.27037367847907 --- --- --- --- 0.809797346591949 2.24210929870605 0.811761081218719 2.73676586151123 0.969726979732513 0.601073980331421 0.850341975688934 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29E6.10c /DEF=conserved protein --- --- --- --- --- --- SPAC29E6.10c // ||SPAC30.14c|kinetochore protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.69999117633381 2.76872887783842 4.27037367847907 1.00242497043863 3.37956881808637 Max fold change at or above threshold 1 4.27037367847907 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777014_at SPBC582.07c.S1 --- 4.26830405111241 --- --- --- --- 9.13944149017334 5.58644151687622 2.92477226257324 7.62154674530029 0.0952147990465164 0.366210997104645 0.274170011281967 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC582.07c /GEN=rpn7 /DEF=19S proteasome regulatory subunit --- --- --- --- --- --- D89258 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1700. // gb // 11 // --- /// SPBC582.07c // |rpn7||19S proteasome regulatory subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.1621812054871 -1.63600414728477 -4.26830405111241 -3.1248386779121 -1.1991583592673 Max fold change at or above threshold 4 4.26830405111241 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1779097_at YOR095C.S1 Ribose-5-phosphate ketol-isomerase, catalyzes the interconversion of ribose 5-phosphate and ribulose 5-phosphate in the pentose phosphate pathway 4.26661857377948 661.334533691406 402.542083740234 RKI1 6098 // pentose-phosphate shunt // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4751 // ribose-5-phosphate isomerase activity // inferred from sequence similarity /// 4751 // ribose-5-phosphate isomerase activity // inferred from mutant phenotype 381.071380615234 645.398132324219 677.270935058594 424.012786865234 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR095C /GEN=RKI1 /DB_XREF=GI:6324669 /SEG=NC_001147:-503552,504328 /DEF=Ribose-5-phosphate ketol-isomerase /NOTE=Rki1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: ribose-5-phosphate isomerase activity [goid GO:0004751] [evidence IMP,ISS] [pmid 8929392]; go_process: pentose-phosphate shunt [goid GO:0006098] [evidence IGI] [pmid 8929392] --- --- --- --- --- --- S0005621 // RKI1 SGDID:S0005621, Chr XV from 504328-503552, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017533 // cdna:Genscan chromosome:SGD1:XV:503552:504328:-1 // ensembl // 11 // --- /// GENEFINDER00000022726 // cdna:GeneFinder chromosome:SGD1:XV:503552:504328:-1 // ensembl // 11 // --- /// YOR095C // cdna:known chromosome:SGD1:XV:503552:504328:-1 gene:YOR095C // ensembl // 11 // --- --- No cerevisiae_gene 4.26661857377948 1.69364104772768 -1.1635318480341 1.77728102794062 1.11268599121947 Max fold change at or above threshold 4 4.26661857377948 Max fold change at or above threshold -0.999115427288565 0.751387077153259 0.962464543392963 -0.714736193257657 531.93830871582 151.000499021433 0.283868442161971 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780196_at SPBPB2B2.05.S1 --- 4.26413415044662 --- --- --- --- 0.681883752346039 0.812536835670471 2.90764379501343 2.81091260910034 0.981445014476776 0.976073980331421 0.533936023712158 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB2B2.05 /DEF=GMP synthase (glutamine-hydrolyzing) (predicted) --- --- --- --- --- --- SPBPB2B2.05 // |||GMP synthase [glutamine-hydrolyzing] |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.16858602359869 1.19160609543037 -1.1696376264684 4.26413415044662 4.12227538701329 Max fold change at or above threshold 2 4.26413415044662 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778296_at YOL007C.S1 Appears to be a structural component of the chitin synthase 3 complex 4.2629954370699 29.9332828521729 132.51619720459 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5935 // bud neck // inferred from direct assay --- 124.788009643555 30.5941886901855 29.2723770141602 140.244384765625 0.000244141003349796 0.0239257998764515 0.0239257998764515 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL007C /GEN=MDM12 /DB_XREF=GI:6324567 /SEG=NC_001147:-311342,312367 /DEF=Appears to be a structural component of the chitin synthase 3 complex /NOTE=Yol007cp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005367 // span:134-156 // numtm:1 S0005367 // YOL007C SGDID:S0005367, Chr XV from 312367-311342, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017463 // cdna:Genscan chromosome:SGD1:XV:311342:312367:-1 // ensembl // 11 // --- /// GENEFINDER00000022644 // cdna:GeneFinder chromosome:SGD1:XV:311342:315387:-1 // ensembl // 11 // --- /// YOL007C // cdna:known chromosome:SGD1:XV:311342:312367:-1 gene:YOL007C // ensembl // 11 // --- --- No cerevisiae_gene 1.37866586974223 -4.07881414693589 -1.50547171428148 -4.2629954370699 1.12386105977826 Max fold change at or above threshold 4 4.2629954370699 Max fold change at or above threshold 0.731370229570161 -0.850020631660358 -0.872212118146177 0.990862520236373 81.2247400283813 59.5639087480717 0.733322245503759 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1773168_at YGL162W.S1 Transcription factor of the Zn[II]2Cys6 family involved in sterol uptake; involved in induction of hypoxic gene expression 4.26078671704563 3510.37292480469 956.631500244141 SUT1 6357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence similarity /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 15918 // sterol transport // inferred from mutant phenotype /// 45449 // regulation of transcription // inferred from direct assay 5634 // nucleus // inferred from direct assay 3700 // transcription factor activity // inferred from direct assay /// 3704 // specific RNA polymerase II transcription factor activity // inferred from sequence similarity /// 3704 // specific RNA polymerase II transcription factor activity // inferred from mutant phenotype 891.356201171875 3797.87866210938 3222.8671875 1021.90679931641 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL162W /GEN=SUT1 /DB_XREF=GI:6321276 /SEG=NC_001139:+198142,199041 /DEF=Involved in sterol uptake /NOTE=Sut1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11248676]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IMP,ISS] [pmid 11248676]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP,ISS] [pmid 11248676]; go_process: sterol transport [goid GO:0015918] [evidence IMP] [pmid 11248676] --- --- --- --- --- --- S0003130 // SUT1 SGDID:S0003130, Chr VII from 198144-199043, Verified ORF // sgd // 11 // --- /// GENSCAN00000019226 // cdna:Genscan chromosome:SGD1:VII:198144:199043:1 // ensembl // 11 // --- /// GENEFINDER00000021396 // cdna:GeneFinder chromosome:SGD1:VII:198144:199043:1 // ensembl // 11 // --- /// YGL162W // cdna:known chromosome:SGD1:VII:198144:199043:1 gene:YGL162W // ensembl // 11 // --- --- No cerevisiae_gene 2.16099748150847 4.26078671704563 1.64462317806516 3.61568942165081 1.14646288203627 Max fold change at or above threshold 4 4.26078671704563 Max fold change at or above threshold -0.898402512758372 1.04715859624753 0.66225877962224 -0.811014863111401 2233.50221252441 1493.92504171848 0.668871082079643 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780127_at SPAC1556.04c.S1 --- 4.25964475067489 --- --- --- --- 0.96032702922821 0.833026051521301 4.09065198898315 2.55275201797485 0.533936023712158 0.953857004642487 0.432372987270355 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1556.04c /GEN=pcd1 /DEF=cytidine deaminase --- --- --- --- --- --- SPAC1556.04c // |pcd1||cytidine deaminase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.26392774802078 -1.15281752290271 2.18158925604846 4.25964475067489 2.65821115128503 Max fold change at or above threshold 2 4.25964475067489 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776939_at SPCC338.12.S1 --- 4.25661732118654 --- --- --- --- 1.01513934135437 0.720628917217255 2.39354968070984 4.3210597038269 0.780517995357513 0.953857004642487 0.753906011581421 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC338.12 /DEF=protease inhibitor (predicted) --- --- --- --- --- --- SPCC338.12 // |||protease inhibitor |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.69496980044718 -1.40868527074154 -1.49262142724243 2.35785333421955 4.25661732118654 Max fold change at or above threshold 1 4.25661732118654 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769903_at YLR212C.S1 Gamma-tubulin, involved in nucleating microtubules from both the cytoplasmic and nuclear faces of the spindle pole body 4.25630140750562 104.038745880127 416.652420043945 TUB4 7020 // microtubule nucleation // inferred from physical interaction /// 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from mutant phenotype 928 // gamma-tubulin complex (sensu Saccharomyces) // inferred from physical interaction /// 5822 // inner plaque of spindle pole body // inferred from direct assay /// 5824 // outer plaque of spindle pole body // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from physical interaction 411.83447265625 96.7587661743164 111.318725585938 421.470367431641 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR212C /GEN=TUB4 /DB_XREF=GI:6323241 /SEG=NC_001144:-564862,566283 /DEF=Gamma-tubulin, involved in nucleating microtubules from both the cytoplasmic and nuclear faces of the spindle pole body /NOTE=Tub4p; go_component: inner plaque of spindle pole body [goid GO:0005822] [evidence IDA] [pmid 9215630]; go_component: outer plaque of spindle pole body [goid GO:0005824] [evidence IDA] [pmid 9215630]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9215630]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752]; go_process: mitotic spindle assembly (sensu Fungi) [goid GO:0030472] [evidence IMP] [pmid 9153752] --- --- --- --- --- --- S0004202 // TUB4 SGDID:S0004202, Chr XII from 566283-564862, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017983 // cdna:Genscan chromosome:SGD1:XII:564862:566283:-1 // ensembl // 11 // --- /// GENEFINDER00000024707 // cdna:GeneFinder chromosome:SGD1:XII:564862:566283:-1 // ensembl // 11 // --- /// YLR212C // cdna:known chromosome:SGD1:XII:564862:566283:-1 gene:YLR212C // ensembl // 11 // --- --- No cerevisiae_gene 2.27009382443502 -4.25630140750562 -1.5459179722493 -3.69959744408245 1.02339749441867 Max fold change at or above threshold 4 4.25630140750562 Max fold change at or above threshold 0.838677567619335 -0.905654493046 -0.825047186671102 0.892024112097766 260.345582962036 180.628283792339 0.693801990943239 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779616_at SPBC337.07c.S1 --- 4.25343045320605 --- --- --- --- 1.45558595657349 2.41763019561768 3.01361536979675 6.19123363494873 0.567627012729645 0.432372987270355 0.533936023712158 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC337.07c /DEF=carboxypeptidase (predicted) --- --- --- --- --- --- SPBC337.07c // |||carboxypeptidase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.88344730777358 1.6609326194029 2.7499342360655 2.07037953079112 4.25343045320605 Max fold change at or above threshold 2 4.25343045320605 Max fold change at or above threshold APAAAM No 4 0 AAAM 3 0 1 No No x = 1
1778735_at YGR035C.S1 Protein of unknown function, potential Cdc28p substrate; transcription is activated by paralogous transcription factors Yrm1p and Yrr1p along with genes involved in multidrug resistance 4.24895428437344 3842.82348632813 1157.57861328125 --- --- --- --- 1148.66015625 4880.6044921875 2805.04248046875 1166.4970703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR035C /GEN=RPL26B /DB_XREF=GI:6321472 /SEG=NC_001139:-557074,557424 /DEF=Protein of unknown function, potential Cdc28p substrate; transcription is activated by paralogous transcription factors Yrm1p and Yrr1p along with genes involved in multidrug resistance /NOTE=Ygr035cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003267 // YGR035C SGDID:S0003267, Chr VII from 557426-557076, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000019366 // cdna:Genscan chromosome:SGD1:VII:557076:557426:-1 // ensembl // 10 // --- /// YGR035C // cdna:known chromosome:SGD1:VII:557076:557426:-1 gene:YGR035C // ensembl // 10 // --- --- No cerevisiae_gene 1.73837023944337 4.24895428437344 2.20708506344008 2.44201251798121 1.0155284519668 Max fold change at or above threshold 4 4.24895428437344 Max fold change at or above threshold -0.764968223313908 1.34730143998873 0.172539365045947 -0.754872581720773 2500.20104980469 1766.79351163071 0.706660575064046 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776345_at SPAC1F5.10.S1 --- 4.24887592266049 --- --- --- --- 3.99870729446411 2.60259246826172 5.77970123291016 2.10102534294128 0.24609400331974 0.567627012729645 0.24609400331974 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F5.10 /GEN=tif412 /DEF=translation initiation factor --- --- --- --- --- --- SPAC1F5.10 // |tif412||translation initiation factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.24887592266049 -1.53643236243393 -1.38497078494918 1.44539242492485 -1.90321706870333 Max fold change at or above threshold 3 4.24887592266049 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771491_at SPAC458.02c.S1 --- 4.24736376962675 --- --- --- --- 2.46324610710144 1.28264844417572 5.18340682983398 4.43797492980957 0.24609400331974 0.687744140625 0.601073980331421 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC458.02c /DEF=involved in mitosis (predicted) --- --- --- --- --- --- SPAC458.02c // |||mRNP complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.2285658866296 -1.92043744978338 -4.24736376962675 2.10429920700592 1.80167743572803 Max fold change at or above threshold 2 4.24736376962675 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777005_at SPAC9G1.07.S1 --- 4.24666493372902 --- --- --- --- 5.83479642868042 7.01090717315674 10.2165498733521 1.91829669475555 0.24609400331974 0.432372987270355 0.129638999700546 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9G1.07 /DEF=hypothetical protein --- --- --- --- --- --- SPAC9G1.07 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.55224332928972 1.20156842811092 -4.24666493372902 1.75096937797753 -3.04165484131428 Max fold change at or above threshold 3 4.24666493372902 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778363_at YLR032W.S1 Single-stranded DNA-dependent ATPase, involved in postreplication repair; contains RING finger domain 4.24441914227035 42.2115440368652 172.148857116699 RAD5 6281 // DNA repair // inferred from mutant phenotype 790 // nuclear chromatin // inferred from direct assay 16887 // ATPase activity // traceable author statement 153.635848999023 48.225944519043 36.1971435546875 190.661865234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR032W /GEN=RAD5 /DB_XREF=GI:6323060 /SEG=NC_001144:+204992,208501 /DEF=Single-stranded DNA-dependent ATPase, involved in postreplication repair; contains RING finger domain /NOTE=Rad5p; go_component: nuclear chromatin [goid GO:0000790] [evidence IDA] [pmid 10880451]; go_function: ATPase activity [goid GO:0016887] [evidence TAS] [pmid 11884624]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 12226100] --- --- --- --- --- --- S0004022 // RAD5 SGDID:S0004022, Chr XII from 204992-208501, Verified ORF // sgd // 11 // --- /// GENSCAN00000017845 // cdna:Genscan chromosome:SGD1:XII:204992:208501:1 // ensembl // 11 // --- /// GENEFINDER00000024831 // cdna:GeneFinder chromosome:SGD1:XII:205256:208501:1 // ensembl // 11 // --- /// YLR032W // cdna:known chromosome:SGD1:XII:204992:208501:1 gene:YLR032W // ensembl // 11 // --- --- No cerevisiae_gene -1.87230993305195 -3.18575095897515 1.04451159879067 -4.24441914227035 1.24099854608534 Max fold change at or above threshold 4 4.24441914227035 Max fold change at or above threshold 0.605802725884837 -0.768790238329604 -0.925651258696805 1.08863877114157 107.180200576782 76.6844493054863 0.715472157103781 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780138_at YOR108W.S1 Alpha-isopropylmalate synthase II (2-isopropylmalate synthase), catalyzes the first step in the leucine biosynthesis pathway; the minor isozyme, responsible for the residual alpha-IPMS activity detected in a leu4 null mutant 4.243999752034 203.409690856934 277.547523498535 LEU9 9098 // leucine biosynthesis // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay 3852 // 2-isopropylmalate synthase activity // inferred from genetic interaction /// 3852 // 2-isopropylmalate synthase activity // inferred from direct assay /// 3852 // 2-isopropylmalate synthase activity // inferred from sequence similarity 252.296829223633 156.789001464844 250.030380249023 302.798217773438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR108W /GEN=LEU9 /DB_XREF=GI:6324682 /SEG=NC_001147:+523027,524841 /DEF=gene product responsible for alpha-isopropylmalate synthase II activity /NOTE=Leu9p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11158296]; go_function: 2-isopropylmalate synthase activity [goid GO:0003852] [evidence IGI,ISS] [pmid 10790691]; go_function: 2-isopropylmalate synthase activity [goid GO:0003852] [evidence IDA] [pmid 11158296]; go_process: leucine biosynthesis [goid GO:0009098] [evidence IGI] [pmid 10790691] --- --- --- --- --- --- S0005634 // LEU9 SGDID:S0005634, Chr XV from 523027-524841, Verified ORF // sgd // 11 // --- /// GENSCAN00000017540 // cdna:Genscan chromosome:SGD1:XV:523027:524841:1 // ensembl // 11 // --- /// GENEFINDER00000022691 // cdna:GeneFinder chromosome:SGD1:XV:523114:524841:1 // ensembl // 11 // --- /// YOR108W // cdna:known chromosome:SGD1:XV:523027:524841:1 gene:YOR108W // ensembl // 11 // --- YOR108C-A // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene 4.243999752034 -1.60914877234041 -1.35353156229944 -1.00906469434775 1.20016656057552 Max fold change at or above threshold 4 4.243999752034 Max fold change at or above threshold 0.194127875175236 -1.374697925644 0.156898846821795 1.02367120364697 240.478607177734 60.8785422249655 0.253155750274165 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775433_at YMR056C.S1 Mitochondrial inner membrane ADP/ATP translocator, exchanges cytosolic ADP for mitochondrially synthesized ATP; Aac1p is a minor isoform while Pet9p is the major ADP/ATP translocator 4.24275082250808 1067.33618164063 312.188934326172 AAC1 6839 // mitochondrial transport // inferred from genetic interaction /// 9060 // aerobic respiration // inferred from genetic interaction 5743 // mitochondrial inner membrane // traceable author statement 5471 // ATP:ADP antiporter activity // inferred from direct assay 304.588409423828 842.379638671875 1292.29272460938 319.789459228516 0.00292969006113708 0.00292969006113708 0.000732421991415322 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR056C /GEN=AAC1 /DB_XREF=GI:6323701 /SEG=NC_001145:-387314,388243 /DEF=Mitochondrial inner membrane ADP/ATP translocator, exchanges cytosolic ADP for mitochondrially synthesized ATP; Aac1p is a minor isoform while Pet9p is the major ADP/ATP translocator /NOTE=Aac1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence TAS] [pmid 2167309]; go_function: ATP:ADP antiporter activity [goid GO:0005471] [evidence IDA] [pmid 2167309]; go_process: aerobic respiration [goid GO:0009060] [evidence IGI] [pmid 2167309]; go_process: mitochondrial transport [goid GO:0006839] [evidence IGI] [pmid 2167309] --- --- --- --- scop // a.4.1.AraC type transcriptional activator // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; AraC type transcriptional activator // 1.20000004768372 S0004660 // span:12-34,117-139,180-202,217-239 // numtm:4 S0004660 // AAC1 SGDID:S0004660, Chr XIII from 388243-387314, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021782 // cdna:GeneFinder chromosome:SGD1:XIII:387092:388243:-1 // ensembl // 11 // --- /// YMR056C // cdna:known chromosome:SGD1:XIII:387314:388243:-1 gene:YMR056C // ensembl // 11 // --- --- No cerevisiae_gene -1.24827068771274 2.76563261309042 1.6037484346121 4.24275082250808 1.04990685572521 Max fold change at or above threshold 4 4.24275082250808 Max fold change at or above threshold -0.814087128719528 0.322564745001372 1.27348124257508 -0.781958858856924 689.762557983398 473.136271255643 0.685940786114735 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774810_at YLR442C.S1 Silencing protein that interacts with Sir2p and Sir4p, and histone H3 and H4 tails, to establish a transcriptionally silent chromatin state; required for spreading of silenced chromatin; recruited to chromatin through interaction with Rap1p 4.24207747399845 206.685668945313 624.102569580078 SIR3 1308 // loss of chromatin silencing during replicative cell aging // inferred from direct assay /// 6303 // double-strand break repair via nonhomologous end-joining // inferred from direct assay /// 6342 // chromatin silencing // traceable author statement 783 // nuclear telomere cap complex // inferred from direct assay /// 5677 // chromatin silencing complex // inferred from direct assay /// 5724 // nuclear telomeric heterochromatin // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 30527 // structural constituent of chromatin // traceable author statement /// 42393 // histone binding // traceable author statement 556.822509765625 131.261749267578 282.109588623047 691.382629394531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR442C /GEN=SIR3 /DB_XREF=GI:6323475 /SEG=NC_001144:-1019311,1022247 /DEF=regulator of silencing at HML, HMR, and telomeres /NOTE=Sir3p; go_component: chromatin silencing complex [goid GO:0005677] [evidence IDA] [pmid 9122169]; go_component: nuclear telomere cap complex [goid GO:0000783] [evidence IDA] [pmid 9710643]; go_component: nuclear telomeric heterochromatin [goid GO:0005724] [evidence IDA] [pmid 9214640]; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 9150138]; go_function: histone binding [goid GO:0042393] [evidence TAS] [pmid 12080091]; go_function: structural constituent of chromatin [goid GO:0030527] [evidence TAS] [pmid 11689698]; go_process: chromatin silencing [goid GO:0006342] [evidence TAS] [pmid 10744999]; go_process: double-strand break repair via nonhomologous end-joining [goid GO:0006303] [evidence IDA] [pmid 10908335]; go_process: loss of chromatin silencing during replicative cell aging [goid GO:0001308] [evidence IDA] [pmid 9150138] --- --- --- --- --- --- S0004434 // SIR3 SGDID:S0004434, Chr XII from 1022247-1019311, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018157 // cdna:Genscan chromosome:SGD1:XII:1019311:1022247:-1 // ensembl // 11 // --- /// GENEFINDER00000024808 // cdna:GeneFinder chromosome:SGD1:XII:1019311:1022247:-1 // ensembl // 11 // --- /// YLR442C // cdna:known chromosome:SGD1:XII:1019311:1022247:-1 gene:YLR442C // ensembl // 11 // --- --- No cerevisiae_gene -1.36968550387474 -4.24207747399845 -1.07022399908967 -1.97378087176487 1.24165711204014 Max fold change at or above threshold 4 4.24207747399845 Max fold change at or above threshold 0.555201166500784 -1.11540987421938 -0.523231061489803 1.08343976920839 415.394119262695 254.733597543207 0.613233519038129 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771078_at YCL026C-A.S1 Protein of unknown function, involved in the integration of lipid signaling pathways with cellular homeostasis 4.24009001209933 80.219482421875 333.558929443359 FRM2 45922 // negative regulation of fatty acid metabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 316.693206787109 74.6902084350586 85.7487564086914 350.424652099609 0.000732421991415322 0.0461426004767418 0.014160200022161 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL026C-A /GEN=FRM2 /DB_XREF=GI:10383765 /SEG=NC_001135:-74704,75285 /DEF=Protein of unknown function, involved in the integration of lipid signaling pathways with cellular homeostasis /NOTE=Frm2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: negative regulation of fatty acid metabolism [goid GO:0045922] [evidence IMP] [pmid 8701605] --- --- --- --- --- --- S0000589 // FRM2 SGDID:S0000589, Chr III from 75285-74704, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022446 // cdna:Genscan chromosome:SGD1:III:74704:75285:-1 // ensembl // 11 // --- /// GENEFINDER00000023363 // cdna:GeneFinder chromosome:SGD1:III:74704:75285:-1 // ensembl // 11 // --- /// YCL026C-A // cdna:known chromosome:SGD1:III:74704:75285:-1 gene:YCL026C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.26630419961526 -4.24009001209933 -1.17762642083899 -3.69326880121389 1.10651142679917 Max fold change at or above threshold 4 4.24009001209933 Max fold change at or above threshold 0.747058613302523 -0.899424419711109 -0.824186874175139 0.976552680583726 206.889205932617 146.981774788837 0.710437135307621 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1778715_at SPBC32H8.04c.S1 --- 4.23992590108098 --- --- --- --- 10.3888578414917 3.76903080940247 8.35726070404053 2.45024514198303 0.194580003619194 0.239501953125 0.111571997404099 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32H8.04c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC32H8.04c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.68528845078356 -2.75637381779289 -3.00843810629665 -1.24309366542424 -4.23992590108098 Max fold change at or above threshold 3 4.23992590108098 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769479_at SPCC550.04c.S1 --- 4.23899137960176 --- --- --- --- 0.891308724880219 1.02919161319733 0.402814388275146 0.231193035840988 0.888427972793579 0.943848013877869 0.943848013877869 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC550.04c /DEF=phosphatidylinositol-glycan-class c --- --- --- --- --- --- SPCC550.04c // |||pig-C|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.23899137960176 1.15469711500427 -1.8043955362394 -2.21270329666427 -3.85525767088093 Max fold change at or above threshold 0 4.23899137960176 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769890_at YMR131C.S1 Essential nuclear protein involved in early steps of ribosome biogenesis; physically interacts with the ribosomal protein Rpl3p 4.23880752351303 412.368209838867 427.119476318359 RRB1 7046 // ribosome biogenesis // inferred from mutant phenotype /// 7046 // ribosome biogenesis // inferred from physical interaction 5730 // nucleolus // inferred from direct assay --- 408.170227050781 344.866394042969 479.870025634766 446.068725585938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR131C /GEN=RRB1 /DB_XREF=GI:6323779 /SEG=NC_001145:-533162,534697 /DEF=RiboSome Assembly 2 /NOTE=Rrb1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 10684247]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ribosome biogenesis [goid GO:0007046] [evidence IMP,IPI] [pmid 11728313] --- --- --- --- --- --- S0004738 // RRB1 SGDID:S0004738, Chr XIII from 534697-533162, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018824 // cdna:Genscan chromosome:SGD1:XIII:533162:534697:-1 // ensembl // 11 // --- /// GENEFINDER00000021884 // cdna:GeneFinder chromosome:SGD1:XIII:533162:534697:-1 // ensembl // 11 // --- /// YMR131C // cdna:known chromosome:SGD1:XIII:533162:534697:-1 gene:YMR131C // ensembl // 11 // --- --- No cerevisiae_gene 4.23880752351303 -1.18356045732866 -1.17376923325348 1.17566151039984 1.09284973774053 Max fold change at or above threshold 4 4.23880752351303 Max fold change at or above threshold -0.199974182825216 -1.29376649846786 1.03888743104592 0.454853250247156 419.743843078613 57.8755510552467 0.137883025587125 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779954_at SPCPB1C11.02.S1 --- 4.2387549790641 --- --- --- --- 4.55425405502319 1.07443201541901 5.65891408920288 4.78791570663452 0.432372987270355 0.533936023712158 0.0676269978284836 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCPB1C11.02 /DEF=amino acid permease family (predicted) --- --- --- --- --- --- SPCPB1C11.02 // |||amino acid permease family |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.12859959775784 -4.2387549790641 -2.76371178260607 1.24255564595947 1.05130624000952 Max fold change at or above threshold 3 4.2387549790641 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769536_at SPBC1773.11c.S1 --- 4.2326707392989 --- --- --- --- 0.601122140884399 1.20915341377258 0.419204235076904 0.142019584774971 0.9013671875 0.805419981479645 0.753906011581421 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1773.11c /DEF=CDC50 domain protein --- --- --- --- --- --- SPBC1773.11c // |||CDC50 domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.7601870010499 2.01149372404353 -2.09513663673552 -1.43396008576612 -4.2326707392989 Max fold change at or above threshold 0 4.2326707392989 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773315_at YFL056C.S1 Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase, involved in the oxidative stress response 4.23238254424773 0.729787319898605 0.386796802282333 AAD6 6081 // aldehyde metabolism // inferred from sequence similarity --- 18456 // aryl-alcohol dehydrogenase activity // inferred from sequence similarity 0.625746309757233 0.840769827365875 0.618804812431335 0.147847294807434 0.805419981479645 0.904784977436066 0.870360970497131 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL056C /GEN=AAD6 /DB_XREF=GI:14318463 /SEG=NC_001138:-14793,15431 /DEF=Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase, involved in the oxidative stress response /NOTE=Aad6p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: aryl-alcohol dehydrogenase activity [goid GO:0018456] [evidence ISS] [pmid 10572264]; go_process: aldehyde metabolism [goid GO:0006081] [evidence ISS] [pmid 10572264] --- --- --- --- --- --- S0001838 // AAD6 SGDID:S0001838, Chr VI from 15431-14793, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018563 // cdna:GeneFinder chromosome:SGD1:VI:14305:15431:-1 // ensembl // 10 // --- /// YFL056C // cdna:known chromosome:SGD1:VI:14793:15431:-1 gene:YFL056C // ensembl // 11 // --- --- No cerevisiae_gene 1.73484116113867 1.34362730431773 1.49718720617213 -1.0112175878184 -4.23238254424773 Max fold change at or above threshold 0 4.23238254424773 Max fold change at or above threshold 0.230701946312718 0.96610920376192 0.206961159408096 -1.40377230948273 0.558292061090469 0.29238699432266 0.523716912168807 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770277_at YHR204W.S1 Alpha mannosidase-like protein of the endoplasmic reticulum required for degradation of glycoproteins but not for processing of N-linked oligosaccharides 4.2319196281382 227.959671020508 849.625610351563 MNL1 30433 // ER-associated protein catabolism // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay 30246 // carbohydrate binding // inferred from sequence similarity /// 30246 // carbohydrate binding // inferred from mutant phenotype 808.877685546875 264.782043457031 191.137298583984 890.37353515625 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR204W /GEN=MNL1 /DB_XREF=GI:6321998 /SEG=NC_001140:+506317,508707 /DEF=mannosidase like /NOTE=Mnl1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11254655]; go_function: carbohydrate binding [goid GO:0030246] [evidence IMP,ISS] [pmid 11375935]; go_process: ER-associated protein catabolism [goid GO:0030433] [evidence IMP] [pmid 11375935] --- --- --- --- --- --- S0001247 // MNL1 SGDID:S0001247, Chr VIII from 506318-508708, Verified ORF // sgd // 11 // --- /// GENSCAN00000016726 // cdna:Genscan chromosome:SGD1:VIII:506318:508708:1 // ensembl // 11 // --- /// GENEFINDER00000020277 // cdna:GeneFinder chromosome:SGD1:VIII:506318:508708:1 // ensembl // 11 // --- /// YHR204W // cdna:known chromosome:SGD1:VIII:506318:508708:1 gene:YHR204W // ensembl // 11 // --- --- No cerevisiae_gene 1.3215084799631 -3.05488119581696 -1.25051161639075 -4.2319196281382 1.1007517589687 Max fold change at or above threshold 4 4.2319196281382 Max fold change at or above threshold 0.746690669942924 -0.757543449034009 -0.961145406763155 0.97199818585424 538.792640686035 361.709414263184 0.671333249471682 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778080_at SPBP8B7.13.S1 --- 4.22972415994317 --- --- --- --- 4.81511831283569 6.06589460372925 2.59438920021057 8.29834175109863 0.398925989866257 0.24609400331974 0.24609400331974 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.13 /DEF=sequence orphan --- --- --- --- --- --- SPBP8B7.13 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.06763731755733 1.25976024048243 -4.22972415994317 -1.85597377311194 1.7233931155913 Max fold change at or above threshold 4 4.22972415994317 Max fold change at or above threshold APAAAM No 4 0 AAAM 3 0 1 No No x = 1
1770928_at YDR325W.S1 Non-SMC subunit of the condensin complex (Smc2p-Smc4p-Ycs4p-Brn1p-Ycg1p); required for establishment and maintenance of chromosome condensation, chromosome segregation and for chromatin binding of the condensin complex 4.22928148607436 29.3073863983154 100.925487518311 YCG1 70 // mitotic sister chromatid segregation // inferred from mutant phenotype /// 7076 // mitotic chromosome condensation // inferred from genetic interaction /// 7076 // mitotic chromosome condensation // traceable author statement /// 7076 // mitotic chromosome condensation // inferred from mutant phenotype /// 10032 // meiotic chromosome condensation // inferred from mutant phenotype 799 // nuclear condensin complex // inferred from genetic interaction /// 799 // nuclear condensin complex // inferred from sequence similarity --- 86.9589538574219 20.561164855957 38.0536079406738 114.892021179199 0.000732421991415322 0.000244141003349796 0.00805663969367743 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR325W /GEN=YCG1 /DB_XREF=GI:27469361 /SEG=NC_001136:+1117117,1120224 /DEF=Yeast Condensin G /NOTE=Ycg1p; go_component: nuclear condensin complex [goid GO:0000799] [evidence IGI,ISS] [pmid 10749931]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitotic chromosome condensation [goid GO:0007076] [evidence IGI] [pmid 10749931]; go_process: mitotic chromosome condensation [goid GO:0007076] [evidence TAS] [pmid 10811823] --- --- --- --- --- --- S0002733 // YCG1 SGDID:S0002733, Chr IV from 1117119-1120226, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023932 // cdna:GeneFinder chromosome:SGD1:IV:1117119:1120226:1 // ensembl // 11 // --- /// GENSCAN00000025355 // cdna:Genscan chromosome:SGD1:IV:1117119:1120226:1 // ensembl // 11 // --- /// YDR325W // cdna:known chromosome:SGD1:IV:1117119:1120226:1 gene:YDR325W // ensembl // 11 // --- --- No cerevisiae_gene -2.02396859212001 -4.22928148607436 -1.07860292340516 -2.2851697529704 1.32122128984643 Max fold change at or above threshold 4 4.22928148607436 Max fold change at or above threshold 0.50232493102393 -1.02466323313141 -0.622379452990265 1.14471775509775 65.116436958313 43.4828445695209 0.66777063673429 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1776967_at YDR503C.S1 Lipid phosphate phosphatase, catalyzes Mg(2+)-independent dephosphorylation of phosphatidic acid (PA), lysophosphatidic acid, and diacylglycerol pyrophosphate; involved in control of the cellular levels of phosphatidylinositol and PA 4.22835685160759 84.446418762207 361.957611083984 LPP1 6644 // phospholipid metabolism // inferred from mutant phenotype 16020 // membrane // inferred from direct assay 8195 // phosphatidate phosphatase activity // inferred from direct assay 345.115142822266 87.2736282348633 81.6192092895508 378.800079345703 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR503C /GEN=LPP1 /DB_XREF=GI:6320711 /SEG=NC_001136:-1455030,1455854 /DEF=Lipid phosphate phosphatase /NOTE=Lpp1p; go_component: membrane [goid GO:0016020] [evidence IDA] [pmid 10685032]; go_function: phosphatidate phosphatase activity [goid GO:0008195] [evidence IDA] [pmid 10685032]; go_process: phospholipid metabolism [goid GO:0006644] [evidence IMP] [pmid 10329682] --- --- --- --- --- S0002911 // span:17-39,118-140,214-231,236-255 // numtm:4 S0002911 // LPP1 SGDID:S0002911, Chr IV from 1455856-1455032, reverse complement, Verified ORF // sgd // 11 // --- /// YDR503C // cdna:known chromosome:SGD1:IV:1455032:1455856:-1 gene:YDR503C // ensembl // 11 // --- --- No cerevisiae_gene -1.70798311791985 -3.95440352145692 -1.12708471743083 -4.22835685160759 1.0976049217892 Max fold change at or above threshold 4 4.22835685160759 Max fold change at or above threshold 0.758039845229209 -0.845184886836993 -0.880343322487261 0.967488364095045 223.202014923096 160.82680701607 0.720543705985286 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771613_at SPCC162.02c.S1 --- 4.22743906648241 --- --- --- --- 0.881577908992767 1.6193106174469 0.785946667194366 3.22829842567444 0.567627012729645 0.466064006090164 0.567627012729645 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC162.02c /DEF=AMP-binding dehydrogenase (predicted) --- --- --- --- --- --- D89124 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0462. // gb // 11 // --- /// SPCC162.02c // |||AMP-binding dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.29447048481653 1.83683211764802 4.22743906648241 -1.12167650273241 3.66195476627004 Max fold change at or above threshold 1 4.22743906648241 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771649_at YGL242C.S1 Hypothetical protein 4.22239846157298 103.406299591064 438.013381958008 --- --- --- --- 424.960540771484 106.168251037598 100.644348144531 451.066223144531 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL242C /GEN=TAD1 /DB_XREF=GI:6321195 /SEG=NC_001139:-44652,45197 /DEF=Hypothetical ORF /NOTE=Ygl242cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003211 // YGL242C SGDID:S0003211, Chr VII from 45197-44652, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019169 // cdna:Genscan chromosome:SGD1:VII:44652:45197:-1 // ensembl // 11 // --- /// GENEFINDER00000021578 // cdna:GeneFinder chromosome:SGD1:VII:44652:45197:-1 // ensembl // 11 // --- /// YGL242C // cdna:known chromosome:SGD1:VII:44652:45197:-1 gene:YGL242C // ensembl // 11 // --- --- No cerevisiae_gene -1.6007699040557 -4.0027083108018 1.08819544438689 -4.22239846157298 1.06143083855657 Max fold change at or above threshold 4 4.22239846157298 Max fold change at or above threshold 0.79719261128178 -0.850377596921378 -0.878926022127084 0.932111007766682 270.709840774536 193.492385421051 0.714759333711121 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772776_at SPBC409.20c.S1 --- 4.22163913200017 --- --- --- --- 1.52537930011749 2.51359629631042 2.95331859588623 2.99087953567505 0.780517995357513 0.725830018520355 0.696289002895355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC409.20c /GEN=psh3 /DEF=involved in secretory pathway (predicted) --- --- --- --- --- --- SPBC409.20c // |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 4.22163913200017 1.64785001089028 -2.38336658721993 1.93612080330364 1.96074480323987 Max fold change at or above threshold 3 4.22163913200017 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769686_at SPBC3B9.05.S1 --- 4.22077949547731 --- --- --- --- 1.80912578105927 3.49793887138367 7.63592100143433 2.26695108413696 0.633789002895355 0.533936023712158 0.219482004642487 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B9.05 /DEF=conserved fungal protein --- --- --- --- --- --- SPBC3B9.05 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.08330909526302 1.93349677949732 1.83000830189838 4.22077949547731 1.2530643849482 Max fold change at or above threshold 2 4.22077949547731 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770118_at YOR178C.S1 Regulatory subunit for Glc7p (protein phosphatase I) for glycogen synthesis; regulatory role also predicted for glucose repression and ion homeostasis; potential Cdc28p substrate 4.21748404853147 2551.53295898438 685.035522460938 GAC1 122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 5977 // glycogen metabolism // inferred from physical interaction /// 7094 // mitotic spindle checkpoint // inferred from mutant phenotype /// 7126 // meiosis // inferred from physical interaction /// 9408 // response to heat // inferred from physical interaction /// 9408 // response to heat // inferred from mutant phenotype 164 // protein phosphatase type 1 complex // inferred from direct assay 163 // protein phosphatase type 1 activity // inferred from physical interaction /// 8599 // protein phosphatase type 1 regulator activity // traceable author statement 624.624877929688 2468.72045898438 2634.34545898438 745.446166992188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR178C /GEN=GAC1 /DB_XREF=GI:6324752 /SEG=NC_001147:-667860,670241 /DEF=Regulatory subunit for Glc7p (protein phosphatase I) for glycogen synthesis; regulatory role also predicted for glucose repression and ion homeostatis; potential Cdc28p substrate /NOTE=Gac1p; go_component: protein phosphatase type 1 complex [goid GO:0000164] [evidence IDA] [pmid 8289829]; go_function: protein phosphatase type 1 activity [goid GO:0000163] [evidence IPI] [pmid 8289829]; go_function: protein phosphatase type 1 regulator activity [goid GO:0008599] [evidence TAS] [pmid 11412094]; go_process: glycogen metabolism [goid GO:0005977] [evidence IPI] [pmid 8289829]; go_process: meiosis [goid GO:0007126] [evidence IPI] [pmid 8754819]; go_process: mitotic spindle checkpoint [goid GO:0007094] [evidence IMP] [pmid 10072380]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence TAS] [pmid 8846786]; go_process: response to heat [goid GO:0009408] [evidence IMP,IPI] [pmid 10207049] --- --- --- --- --- --- S0005704 // GAC1 SGDID:S0005704, Chr XV from 670241-667860, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017598 // cdna:Genscan chromosome:SGD1:XV:667860:670241:-1 // ensembl // 11 // --- /// GENEFINDER00000022808 // cdna:GeneFinder chromosome:SGD1:XV:667860:670163:-1 // ensembl // 11 // --- /// YOR178C // cdna:known chromosome:SGD1:XV:667860:670241:-1 gene:YOR178C // ensembl // 11 // --- --- No cerevisiae_gene 1.31509380532495 3.95232490125421 1.57446471290288 4.21748404853147 1.19343015837435 Max fold change at or above threshold 4 4.21748404853147 Max fold change at or above threshold -0.919316043192457 0.786808526578352 0.940041843100198 -0.807534326486093 1618.28424072266 1080.86807594736 0.667909906522162 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772173_at SPAC926.06c.S1 --- 4.21718715054475 --- --- --- --- 1.76229047775269 1.40707516670227 4.78764200210571 4.47956228256226 0.601073980331421 0.633789002895355 0.334473013877869 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC926.06c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC926.06c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.73344583067603 -1.25244942093813 -4.21718715054475 2.71671558267229 2.54189779670982 Max fold change at or above threshold 2 4.21718715054475 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777202_at SPAC11D3.10.S1 --- 4.21584216911354 --- --- --- --- 8.76168727874756 10.3484888076782 2.07827687263489 3.28652834892273 0.432372987270355 0.601073980331421 0.828612983226776 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11D3.10 /DEF=nifs homolog --- --- --- --- --- --- SPAC11D3.10 // |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.32206960062102 1.18110684374454 1.47514486037512 -4.21584216911354 -2.66593996720567 Max fold change at or above threshold 3 4.21584216911354 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777535_at SPBC713.08.S1 --- 4.2146442763243 --- --- --- --- 17.950044631958 6.03714370727539 42.1982231140137 11.0284538269043 0.0461426004767418 0.274170011281967 0.014160200022161 0.0561522990465164 P A P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC713.08 /DEF=hypothetical protein --- --- --- --- --- --- SPBC713.08 // |tom13||mitochondrial mitochondrial TOM complex component|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.64495841980398 -2.97326774088984 -4.2146442763243 2.35087009415478 -1.6276120763337 Max fold change at or above threshold 4 4.2146442763243 Max fold change at or above threshold PPAAPM No 4 0 PAPM 1 2 1 No No 1 < x = 2
1778945_at SPBC28F2.02.S1 --- 4.21403105523009 --- --- --- --- 1.75796604156494 0.554052472114563 0.710578739643097 0.556581556797028 0.780517995357513 0.696289002895355 0.780517995357513 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC28F2.02 /GEN=mep33 /DEF=mRNA export protein --- --- --- --- --- --- D89195 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1086. // gb // 11 // --- /// SPBC28F2.02 // |mep33||mRNA export protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.01762711048142 -3.17292337827786 4.21403105523009 -2.47399189349222 -3.15850573935929 Max fold change at or above threshold 0 4.21403105523009 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-A00196-1_s_at AFFX-Sc-A00196-1 --- 4.2134984526863 --- --- --- --- 0.657174587249756 1.06662535667419 2.76900410652161 1.01158797740936 0.969726979732513 0.976073980331421 0.753906011581421 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL A00196 /FEA=CDS /DB_XREF=CAA00038.1 GI:14446 REMTREMBL:CAA00038 /PROD=beta glucuronidase /GEN=uidA --- --- --- --- --- --- AFFX-Sc-A00196-1 // --- // affx // --- // --- --- No No 1.89886336839127 1.62304717402109 1.83159803220879 4.2134984526863 1.53929868414847 Max fold change at or above threshold 1 4.2134984526863 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779546_at SPAC9E9.17c.S1 --- 4.21347556585696 --- --- --- --- 0.299949824810028 1.26383125782013 0.126669868826866 0.166447177529335 0.850341975688934 0.633789002895355 0.976073980331421 0.77392578125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9E9.17c /DEF=sequence orphan --- --- --- --- --- --- SPAC9E9.17c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.97450064314234 4.21347556585696 1.1937521697236 -2.36796507005153 -1.8020721604436 Max fold change at or above threshold 0 4.21347556585696 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777122_at YOL014W.S1 Hypothetical protein 4.21153327978039 49.0674438476563 16.0866775512695 --- --- --- --- 13.5697460174561 57.1494369506836 40.9854507446289 18.603609085083 0.0805663987994194 0.000244141003349796 0.00195312988944352 0.005859375 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL014W /GEN=CMK2 /DB_XREF=GI:6324559 /SEG=NC_001147:+299693,300067 /DEF=Hypothetical ORF /NOTE=Yol014wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005374 // YOL014W SGDID:S0005374, Chr XV from 299693-300067, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022711 // cdna:GeneFinder chromosome:SGD1:XV:299693:300067:1 // ensembl // 11 // --- /// YOL014W // cdna:known chromosome:SGD1:XV:299693:300067:1 gene:YOL014W // ensembl // 11 // --- --- No cerevisiae_gene 1.84226072130613 4.21153327978039 2.00770825031573 3.02035503773655 1.37096221706371 Max fold change at or above threshold 4 4.21153327978039 Max fold change at or above threshold -0.938308503709576 1.21303140283661 0.415085666433193 -0.689808565560226 32.5770606994629 20.2569992778089 0.621817894029429 APPPPP Called_P_>2EXP 2 0 APPP 1 3 0 Yes Yes 2 < x = 3
1771942_at SPAC23H3.14.S1 --- 4.21024809458383 --- --- --- --- 7.29750394821167 2.03412294387817 2.84997272491455 3.74060583114624 0.107421875 0.358154296875 0.432372987270355 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H3.14 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC23H3.14 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.21024809458383 -3.58754320636026 -2.16015430505384 -2.56055220613751 -1.95088824581538 Max fold change at or above threshold 3 4.21024809458383 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775008_at SPAC959.09c.S1 --- 4.208332787717 --- --- --- --- 6.93426036834717 6.15267372131348 7.14559316635132 1.65669560432434 0.466064006090164 0.5 0.432372987270355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC959.09c /GEN=apc5 /DEF=anaphase-promoting complex (APC) (PMID 12477395) --- --- --- --- --- --- SPAC959.09c // |apc5|SPAP32A8.01c|anaphase-promoting complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.208332787717 -1.12703203232218 -1.41224381821556 1.03047661708361 -4.18559713096795 Max fold change at or above threshold 3 4.208332787717 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770294_at YCR059C.S1 Protein that inhibits activation of Gcn2p, an eIF2 alpha subunit protein kinase, by competing for Gcn1p binding, thus impacting gene expression in response to starvation; has sequence and functional similarity to the mouse IMPACT gene 4.20800946222876 317.765838623047 811.513061523438 YIH1 6521 // regulation of amino acid metabolism // inferred from physical interaction /// 6521 // regulation of amino acid metabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 761.316467285156 180.920806884766 454.610870361328 861.709655761719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR059C /GEN=YIH1 /DB_XREF=GI:6319904 /SEG=NC_001135:-223449,224225 /DEF=piecemeal microautophagy of the nucleus (PMN) /NOTE=Yih1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: regulation of amino acid metabolism [goid GO:0006521] [evidence IMP,IPI] [pmid 10801780] --- --- --- --- --- --- S0000655 // YIH1 SGDID:S0000655, Chr III from 224225-223449, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022499 // cdna:Genscan chromosome:SGD1:III:223449:224225:-1 // ensembl // 11 // --- /// GENEFINDER00000023341 // cdna:GeneFinder chromosome:SGD1:III:223449:224225:-1 // ensembl // 11 // --- /// YCR059C // cdna:known chromosome:SGD1:III:223449:224225:-1 gene:YCR059C // ensembl // 11 // --- --- No cerevisiae_gene -1.14535126412405 -4.20800946222876 1.027234735909 -1.67465522036474 1.13186787990356 Max fold change at or above threshold 4 4.20800946222876 Max fold change at or above threshold 0.636677665047457 -1.24216389511941 -0.356181623112524 0.961667853184473 564.639450073242 308.911444533325 0.547095043559663 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774259_at YOR387C.S1 Hypothetical protein 4.20733596991497 1.60389670729637 0.69872123003006 --- --- 5625 // soluble fraction // inferred from direct assay --- 0.567068696022034 0.850443303585052 2.35735011100769 0.830373764038086 0.805419981479645 0.888427972793579 0.601073980331421 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR387C /GEN=PHR1 /DB_XREF=GI:6324963 /SEG=NC_001147:-1069617,1070237 /DEF=Hypothetical ORF /NOTE=Yor387cp; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 11935221]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005914 // YOR387C SGDID:S0005914, Chr XV from 1070237-1069617, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017831 // cdna:Genscan chromosome:SGD1:XV:1069617:1070237:-1 // ensembl // 11 // --- /// YOR387C // cdna:known chromosome:SGD1:XV:1069617:1070237:-1 gene:YOR387C // ensembl // 11 // --- GENEFINDER00000022806 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -2.36463778331596 1.49971830494415 4.20733596991497 4.15708031062976 1.46432657958926 Max fold change at or above threshold 0 4.20733596991497 Max fold change at or above threshold -0.717450578400155 -0.369464851259314 1.48102579652335 -0.394110366863883 1.15130896866322 0.814328248147741 0.707306440158507 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777433_at SPAC57A10.06.S1 --- 4.20700052103802 --- --- --- --- 0.237629011273384 0.999705374240875 0.245427995920181 0.258256077766418 0.932372987270355 0.633789002895355 0.943848013877869 0.86572265625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC57A10.06 /DEF=sequence orphan --- --- --- --- --- --- SPAC57A10.06 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.58912205063105 4.20700052103802 1.28890783496571 1.03282000209067 1.08680365407616 Max fold change at or above threshold 0 4.20700052103802 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773544_at SPAC23D3.14c.S1 --- 4.20675612493939 --- --- --- --- 3.62922406196594 10.1325254440308 15.2672605514526 9.43178081512451 0.334473013877869 0.219482004642487 0.0239257998764515 0.00415039015933871 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23D3.14c /DEF=alpha-amylase (predicted) --- --- --- --- --- --- SPAC23D3.14c // |||alpha-amylase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.51536955981477 2.79192611727092 -1.14402324591789 4.20675612493939 2.59884224674057 Max fold change at or above threshold 4 4.20675612493939 Max fold change at or above threshold APAAPP No 3 0 AAPP 2 2 0 No No 1 < x = 2
1769741_at YDR119W.S1 Hypothetical protein 4.20654422911308 332.968826293945 1378.56970214844 --- --- 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay --- 1296.40576171875 308.187835693359 357.749816894531 1460.73364257813 0.000244141003349796 0.00415039015933871 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR119W /GEN=APC4 /DB_XREF=GI:6320324 /SEG=NC_001136:+688221,690527 /DEF=Hypothetical ORF /NOTE=Ydr119wp; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002526 // span:251-273,283-305,312-331,335-357,373-392,407-429,454-473,483-502,523-552,562-581,588-610,620-639,652-674,739-758 // numtm:14 S0002526 // YDR119W SGDID:S0002526, Chr IV from 688222-690528, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023408 // cdna:GeneFinder chromosome:SGD1:IV:688222:690528:1 // ensembl // 11 // --- /// GENSCAN00000025184 // cdna:Genscan chromosome:SGD1:IV:688222:690528:1 // ensembl // 11 // --- /// YDR119W // cdna:known chromosome:SGD1:IV:688222:690528:1 gene:YDR119W // ensembl // 11 // --- --- No cerevisiae_gene 1.87842833947072 -4.20654422911308 -1.20608484716336 -3.62377756883925 1.12675651845415 Max fold change at or above threshold 4 4.20654422911308 Max fold change at or above threshold 0.7250517684837 -0.901025869163585 -0.819473382423277 0.995447483103161 855.769264221191 607.731084387341 0.710157643883621 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777651_at SPCC965.06.S1 --- 4.20447721861034 --- --- --- --- 5.77990865707397 14.3263988494873 1.37470328807831 2.48258709907532 0.24609400331974 0.0805663987994194 0.5 0.45751953125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC965.06 /DEF=potassium channel subunit ??? (predicted) --- --- --- --- --- --- SPCC965.06 // |||aldo/keto reductase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -2.20090564829078 2.47865488876773 -1.13076285640376 -4.20447721861034 -2.32817960716335 Max fold change at or above threshold 2 4.20447721861034 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772160_at SPAC688.04c.S1 --- 4.20156150432184 --- --- --- --- 4.45661306381226 8.61873531341553 4.4438362121582 6.65320062637329 0.194580003619194 0.334473013877869 0.303710997104645 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC688.04c /GEN=gst3 /DEF=glutathione S-transferase (PMID 12151111) --- --- --- --- --- --- SPAC688.04c // |gst3||glutathione S-transferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.15852814969086 1.93392048849826 -4.20156150432184 -1.00287518509775 1.49288271858227 Max fold change at or above threshold 4 4.20156150432184 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777703_at YNL328C.S1 Protein of the mitochondrial inner membrane; function partially overlaps that of Mdj1p, which is a chaperone involved in folding of mitochondrially synthesized proteins in the mitochondrial matrix; member of the DnaJ family 4.19872272692423 32.1932029724121 5.77156841754913 MDJ2 6457 // protein folding // inferred from mutant phenotype /// 6457 // protein folding // inferred from sequence similarity 5743 // mitochondrial inner membrane // inferred from direct assay 51087 // chaperone binding // inferred from sequence similarity 8.33409309387207 34.992546081543 29.3938598632813 3.2090437412262 0.303710997104645 0.0561522990465164 0.0805663987994194 0.567627012729645 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL328C /GEN=MDJ2 /DB_XREF=GI:6324001 /SEG=NC_001146:-22834,23274 /DEF=Protein of the mitochondrial inner membrane with similarity to E. coli DnaJ and other DnaJ-like proteins, function partially overlaps that of Mdj1p /NOTE=Mdj2p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 9325105]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 9847145]; go_process: protein folding [goid GO:0006457] [evidence IMP,ISS] [pmid 9325105] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 0.370000004768372 --- S0005272 // MDJ2 SGDID:S0005272, Chr XIV from 23274-22834, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020537 // cdna:GeneFinder chromosome:SGD1:XIV:22834:23274:-1 // ensembl // 11 // --- /// YNL328C // cdna:known chromosome:SGD1:XIV:22834:23274:-1 gene:YNL328C // ensembl // 11 // --- --- No cerevisiae_gene 1.1679101446058 4.19872272692423 2.53014682575556 3.5269416278652 -2.59706434873573 Max fold change at or above threshold 4 4.19872272692423 Max fold change at or above threshold -0.684070300688372 1.02852876418559 0.66885655115987 -1.01331501465709 18.9823856949806 15.5660793786739 0.820027557589348 AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1779149_at SPCC594.02c.S1 --- 4.19742396732252 --- --- --- --- 8.68864631652832 13.9242477416992 2.06999492645264 2.72834897041321 0.219482004642487 0.111571997404099 0.753906011581421 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC594.02c /DEF=hypothetical protein --- --- --- --- --- --- SPCC594.02c // |||hypothetical protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.24628508482219 1.6025796464072 1.03563906024407 -4.19742396732252 -3.18458027574545 Max fold change at or above threshold 3 4.19742396732252 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779946_at YNL141W.S1 Adenine deaminase (adenine aminohydrolase), involved in purine salvage and nitrogen catabolism 4.19590597603163 415.193069458008 378.040283203125 AAH1 6146 // adenine catabolism // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 34 // adenine deaminase activity // inferred from mutant phenotype 353.439788818359 451.055694580078 379.330444335938 402.640777587891 0.000732421991415322 0.00292969006113708 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL141W /GEN=AAH1 /DB_XREF=GI:6324188 /SEG=NC_001146:+359596,360639 /DEF=Adenine deaminase (adenine aminohydrolase), involved in purine salvage and nitrogen catabolism /NOTE=Aah1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: adenine deaminase activity [goid GO:0000034] [evidence IMP] [pmid 6392474]; go_process: adenine catabolism [goid GO:0006146] [evidence TAS] --- --- --- --- --- --- S0005085 // AAH1 SGDID:S0005085, Chr XIV from 359596-360639, Verified ORF // sgd // 11 // --- /// GENSCAN00000019922 // cdna:Genscan chromosome:SGD1:XIV:359596:360639:1 // ensembl // 11 // --- /// GENEFINDER00000020565 // cdna:GeneFinder chromosome:SGD1:XIV:359596:360639:1 // ensembl // 11 // --- /// YNL141W // cdna:known chromosome:SGD1:XIV:359596:360639:1 gene:YNL141W // ensembl // 11 // --- --- No cerevisiae_gene 4.19590597603163 1.27618821889882 -1.47091811385398 1.07325336970163 1.13920614012934 Max fold change at or above threshold 4 4.19590597603163 Max fold change at or above threshold -1.04078933756248 1.31226572840486 -0.416688811613727 0.145212420771348 396.616676330566 41.484751960783 0.104596590200375 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771761_at SPAC3C7.07c.S1 --- 4.19551411008616 --- --- --- --- 0.729453325271606 0.899437546730042 3.06043171882629 0.419222384691238 0.943848013877869 0.904784977436066 0.567627012729645 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3C7.07c /DEF=arginine-tRNA protein transferase (predicted) --- --- --- --- --- --- SPAC3C7.07c // |||arginine-tRNA protein transferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.8872423887159 1.23302960665118 -1.86156834088515 4.19551411008616 -1.7400152088941 Max fold change at or above threshold 1 4.19551411008616 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779926_at YDR104C.S1 Meiosis-specific protein of unknown function, required for spore wall formation during sporulation; dispensable for both nuclear divisions during meiosis 4.19195569065101 126.816352844238 458.681823730469 SPO71 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype /// 30476 // spore wall assembly (sensu Fungi) // inferred from expression pattern 5619 // spore wall (sensu Fungi) // inferred from sequence similarity /// 5619 // spore wall (sensu Fungi) // inferred from mutant phenotype --- 429.009399414063 102.341110229492 151.291595458984 488.354248046875 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR104C /GEN=SPO71 /DB_XREF=GI:6320309 /SEG=NC_001136:-661167,664904 /DEF=Meiosis-specific protein of unknown function, required for spore wall formation during sporulation; dispensible for both nuclear divisions during meiosis /NOTE=Spo71p; go_component: spore wall (sensu Fungi) [goid GO:0005619] [evidence IMP,ISS] [pmid 9784122]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence IEP,IMP] [pmid 9784122] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 1.29999995231628 --- S0002511 // SPO71 SGDID:S0002511, Chr IV from 664905-661168, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023757 // cdna:GeneFinder chromosome:SGD1:IV:661168:664905:-1 // ensembl // 11 // --- /// GENSCAN00000025173 // cdna:Genscan chromosome:SGD1:IV:661168:663513:-1 // ensembl // 11 // --- /// YDR104C // cdna:known chromosome:SGD1:IV:661168:664905:-1 gene:YDR104C // ensembl // 11 // --- --- No cerevisiae_gene -2.80252151140369 -4.19195569065101 1.30344520969883 -2.83564594657453 1.13832994967911 Max fold change at or above threshold 4 4.19195569065101 Max fold change at or above threshold 0.70179594144431 -0.980678417029031 -0.728563537929408 1.00744601351413 292.749088287354 194.159445901443 0.663228183005859 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778686_at YOR273C.S1 Polyamine transport protein, recognizes spermine, putrescine, and spermidine; localizes to the plasma membrane; member of the major facilitator superfamily 4.19042848071383 5230.79174804688 1511.10076904297 TPO4 15846 // polyamine transport // inferred from mutant phenotype 5774 // vacuolar membrane // inferred from mutant phenotype /// 5886 // plasma membrane // inferred from direct assay 297 // spermine transporter activity // inferred from mutant phenotype /// 15606 // spermidine transporter activity // inferred from mutant phenotype 1475.21704101563 6181.79150390625 4279.7919921875 1546.98449707031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR273C /GEN=TPO4 /DB_XREF=GI:6324847 /SEG=NC_001147:-834449,836428 /DEF=Polyamine transport protein /NOTE=Tpo4p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12562762]; go_component: vacuolar membrane [goid GO:0005774] [evidence IMP] [pmid 11171066]; go_function: spermidine transporter activity [goid GO:0015606] [evidence IMP] [pmid 11171066]; go_function: spermine transporter activity [goid GO:0000297] [evidence IMP] [pmid 11171066]; go_process: polyamine transport [goid GO:0015846] [evidence IMP] [pmid 11171066] --- --- --- --- --- S0005799 // span:94-116,129-148,158-177,184-206,216-238,250-267,318-340,353-375,452-474,487-509,519-538 // numtm:11 S0005799 // TPO4 SGDID:S0005799, Chr XV from 836428-834449, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017709 // cdna:Genscan chromosome:SGD1:XV:834449:836428:-1 // ensembl // 11 // --- /// GENEFINDER00000022571 // cdna:GeneFinder chromosome:SGD1:XV:834449:836428:-1 // ensembl // 11 // --- /// YOR273C // cdna:known chromosome:SGD1:XV:834449:836428:-1 gene:YOR273C // ensembl // 11 // --- --- No cerevisiae_gene 1.51902221088032 4.19042848071383 1.78001929337397 2.90112700246537 1.04864874391993 Max fold change at or above threshold 4 4.19042848071383 Max fold change at or above threshold -0.830070090439359 1.23076573671686 0.397950115103114 -0.798645761380614 3370.94625854492 2283.81824542778 0.677500639364568 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776435_at SPAC1834.09.S1 --- 4.18907008696642 --- --- --- --- 0.532207727432251 0.515308082103729 1.13970160484314 0.45528918504715 0.943848013877869 0.904784977436066 0.805419981479645 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1834.09 /DEF=sequence orphan --- --- --- --- --- --- SPAC1834.09 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.18907008696642 -1.03279522661381 1.16500245717196 2.14146008428301 -1.16894436527662 Max fold change at or above threshold 0 4.18907008696642 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779207_at YKL068W-A.S1 Identified by homology to Ashbya gossypii 4.18680504898402 433.711944580078 176.277603149414 --- --- --- --- 154.248138427734 221.617004394531 645.806884765625 198.307067871094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL068W-A /GEN=STB6 /DB_XREF=GI:33578048 /SEG=NC_001143:+308851,309087 /DEF=Identified by homology to Ashbya gossypii /NOTE=Ykl068w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028524 // YKL068W-A SGDID:S0028524, Chr XI from 308851-309087, Uncharacterized ORF // sgd // 11 // --- /// YKL068W-A // cdna:known chromosome:SGD1:XI:308851:309087:1 gene:YKL068W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.23033739098366 1.4367564280094 1.60173614965012 4.18680504898402 1.28563670130775 Max fold change at or above threshold 4 4.18680504898402 Max fold change at or above threshold -0.658515518032782 -0.364224082984846 1.48878986991066 -0.466050268893032 304.994773864746 228.918880890378 0.750566568697648 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775156_at SPAC8F11.10c.S1 --- 4.18587402777678 --- --- --- --- 3.55930304527283 14.8987941741943 12.6669082641602 9.15108966827393 0.601073980331421 0.432372987270355 0.432372987270355 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8F11.10c /GEN=pvg1 /DEF=pyruvyltransferase (pers. comm. Robert Trimble) --- --- --- --- --- --- SPAC8F11.10c // |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.15588333663009 4.18587402777678 2.60165389057753 3.55881702205248 2.57103414681918 Max fold change at or above threshold 4 4.18587402777678 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774414_at SPAC19G12.11.S1 --- 4.18475149174795 --- --- --- --- 1.44054245948792 0.990752279758453 6.02831220626831 3.78003692626953 0.696289002895355 0.850341975688934 0.303710997104645 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19G12.11 /DEF=conserved yeast protein --- --- --- --- --- --- SPAC19G12.11 // |||conserved yeast protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.07355197747513 -1.45398853872849 1.26313237195247 4.18475149174795 2.62403714751543 Max fold change at or above threshold 2 4.18475149174795 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774345_at SPCC306.05c.S1 --- 4.18378838779615 --- --- --- --- 5.66822338104248 1.95204699039459 4.54203176498413 3.3934338092804 0.366210997104645 0.725830018520355 0.5 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC306.05c /GEN=ins1 /DEF=INSIG domain --- --- --- --- --- --- SPCC306.05c // |ins1||INSIG domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.29108238610409 -2.90373306018452 -4.18378838779615 -1.24794886392924 -1.6703503588433 Max fold change at or above threshold 3 4.18378838779615 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779505_at SPAC9G1.12.S1 --- 4.18363674853969 --- --- --- --- 4.69861698150635 10.6438932418823 19.6573066711426 5.38650894165039 0.398925989866257 0.398925989866257 0.24609400331974 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9G1.12 /GEN=cpd1 /DEF=tRNA methyltransferase --- --- --- --- --- --- SPAC9G1.12 // |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.61277443205679 2.26532472933556 1.35582623973052 4.18363674853969 1.14640307197875 Max fold change at or above threshold 4 4.18363674853969 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770053_at SPBC1105.07c.S1 --- 4.18350087471491 --- --- --- --- 0.864977478981018 0.445073813199997 2.91320848464966 0.270447641611099 0.888427972793579 0.962890625 0.601073980331421 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1105.07c /DEF=THO complex (predicted) --- --- --- --- --- --- SPBC1105.07c // |||THO complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.15694776478589 -1.94344725150642 -4.18350087471491 3.36795876822313 -3.1983176996043 Max fold change at or above threshold 1 4.18350087471491 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775323_at SPCC4B3.09c.S1 --- 4.18295721787626 --- --- --- --- 5.90684795379639 11.061939239502 1.41212248802185 7.53855895996094 0.432372987270355 0.24609400331974 0.625732421875 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4B3.09c /DEF=mitochondrial ribosomal protein subunit l12 --- --- --- --- --- --- SPCC4B3.09c // |||mitochondrial ribosomal protein subunit L12|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.75758752332082 1.87273133251929 1.12304410602961 -4.18295721787626 1.27624056331361 Max fold change at or above threshold 3 4.18295721787626 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769666_at YLR127C.S1 Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; similar to cullin Cdc53p 4.18249102475002 99.8143005371094 367.334701538086 APC2 22 // mitotic spindle elongation // traceable author statement /// 70 // mitotic sister chromatid segregation // traceable author statement /// 7091 // mitotic metaphase/anaphase transition // traceable author statement /// 8054 // cyclin catabolism // traceable author statement /// 16567 // protein ubiquitination // inferred from physical interaction /// 31145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from physical interaction 5680 // anaphase-promoting complex // traceable author statement 4842 // ubiquitin-protein ligase activity // traceable author statement /// 5515 // protein binding // traceable author statement 370.668640136719 88.623893737793 111.004707336426 364.000762939453 0.000732421991415322 0.00585938012227416 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR127C /GEN=APC2 /DB_XREF=GI:6323156 /SEG=NC_001144:-395759,398320 /DEF=subunit of the Anaphase Promoting Complex; all known APC subunit co-immunoprecipitate with epitope-tagged Apc2. Apc2 shows similarity to cullins. /NOTE=Apc2p; go_component: anaphase-promoting complex [goid GO:0005680] [evidence TAS] [pmid 10465783]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 10465783]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 10465783]; go_process: cyclin catabolism [goid GO:0008054] [evidence TAS] [pmid 10465783]; go_process: mitotic metaphase/anaphase transition [goid GO:0007091] [evidence TAS] [pmid 10465783]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence TAS] [pmid 10465783]; go_process: mitotic spindle elongation [goid GO:0000022] [evidence TAS] [pmid 10465783]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10465783] --- --- --- --- scop // a.4.5.SCF ubiquitin ligase complex WHB domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; SCF ubiquitin ligase complex WHB domain // 7.00004634868819E-41 --- S0004117 // APC2 SGDID:S0004117, Chr XII from 398320-395759, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017917 // cdna:Genscan chromosome:SGD1:XII:395759:398320:-1 // ensembl // 11 // --- /// GENEFINDER00000024817 // cdna:GeneFinder chromosome:SGD1:XII:395759:397165:-1 // ensembl // 11 // --- /// YLR127C // cdna:known chromosome:SGD1:XII:395759:398320:-1 gene:YLR127C // ensembl // 11 // --- --- No cerevisiae_gene -2.14364358892156 -4.18249102475002 1.09831789212478 -3.33921550744078 -1.01831830555359 Max fold change at or above threshold 4 4.18249102475002 Max fold change at or above threshold 0.885924721569306 -0.936694502458162 -0.792066029015344 0.8428358099042 233.574501037598 154.746939284272 0.662516407385424 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1776320_at SPAC31A2.05c.S1 --- 4.18236771292209 --- --- --- --- 1.60089075565338 2.0177595615387 0.382771402597427 3.13122177124023 0.432372987270355 0.303710997104645 0.656982421875 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31A2.05c /GEN=mis4 /DEF=adherin --- --- --- --- --- --- SPAC31A2.05c // |mis4||adherin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.5026949020589 1.26039803429009 -3.49753166642142 -4.18236771292209 1.95592470015999 Max fold change at or above threshold 1 4.18236771292209 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773767_at YNL082W.S1 ATP-binding protein required for mismatch repair in mitosis and meiosis; functions as a heterodimer with Mlh1p, binds double- and single-stranded DNA via its N-terminal domain, similar to E. coli MutL 4.18228189862652 46.5318965911865 201.669540405273 PMS1 6298 // mismatch repair // traceable author statement /// 7126 // meiosis // traceable author statement 228 // nuclear chromosome // traceable author statement 3677 // DNA binding // inferred from direct assay /// 5524 // ATP binding // traceable author statement /// 16887 // ATPase activity // inferred from direct assay 176.328338623047 42.1607971191406 50.9029960632324 227.0107421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL082W /GEN=PMS1 /DB_XREF=GI:46562124 /SEG=NC_001146:+473390,476011 /DEF=Required for mismatch repair in mitosis and meiosis, low levels of postmeiotic segregation, and high spore viability, dispensable for homeologous recombination /NOTE=Pms1p; go_component: nuclear chromosome [goid GO:0000228] [evidence TAS] [pmid 10679328]; go_function: ATP binding [goid GO:0005524] [evidence TAS] [pmid 10938116]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 11717305]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 11575920]; go_process: meiosis [goid GO:0007126] [evidence TAS] [pmid 10915869]; go_process: mismatch repair [goid GO:0006298] [evidence TAS] [pmid 10072354] --- --- --- --- --- --- S0005026 // PMS1 SGDID:S0005026, Chr XIV from 473390-476011, Verified ORF // sgd // 11 // --- /// GENSCAN00000019967 // cdna:Genscan chromosome:SGD1:XIV:473390:476011:1 // ensembl // 11 // --- /// GENEFINDER00000020528 // cdna:GeneFinder chromosome:SGD1:XIV:474005:476011:1 // ensembl // 11 // --- /// YNL082W // cdna:known chromosome:SGD1:XIV:473390:476011:1 gene:YNL082W // ensembl // 11 // --- --- No cerevisiae_gene -1.00303953636698 -4.18228189862652 1.03965245666828 -3.46400707738321 1.28743198036251 Max fold change at or above threshold 4 4.18228189862652 Max fold change at or above threshold 0.567711035536589 -0.890681932409276 -0.795654764723744 1.11862566159643 124.10071849823 91.9968379255696 0.741307858962007 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769515_at YFL012W.S1 Hypothetical protein 4.17965456890803 15.1761779785156 5.23017334938049 --- --- --- --- 3.8522047996521 14.2514705657959 16.1008853912354 6.60814189910889 0.533936023712158 0.149657994508743 0.171387001872063 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL012W /GEN=IES1 /DB_XREF=GI:14318509 /SEG=NC_001138:+110641,111087 /DEF=Hypothetical ORF /NOTE=Yfl012wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001882 // YFL012W SGDID:S0001882, Chr VI from 110641-111087, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000023231 // cdna:Genscan chromosome:SGD1:VI:110641:111087:1 // ensembl // 11 // --- /// YFL012W // cdna:known chromosome:SGD1:VI:110641:111087:1 gene:YFL012W // ensembl // 11 // --- --- No cerevisiae_gene 1.40377431452423 3.69956201889447 2.03582240567401 4.17965456890803 1.71541811580363 Max fold change at or above threshold 4 4.17965456890803 Max fold change at or above threshold -1.07643176956263 0.68614914759029 0.999608131380455 -0.609325509408115 10.2031756639481 5.90002176066993 0.57825347274154 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771721_at SPBC776.17.S1 --- 4.17878527016927 --- --- --- --- 6.28789567947388 6.43667888641357 6.23787879943848 1.504718542099 0.149657994508743 0.0375977009534836 0.0952147990465164 0.466064006090164 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC776.17 /DEF=involved in rRNA processing (predicted) --- --- --- --- --- --- SPBC776.17 // |||rRNA processing protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.25166112373424 1.02366184404512 -2.24335387594628 -1.00801825133889 -4.17878527016927 Max fold change at or above threshold 3 4.17878527016927 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1772815_at SPCC584.03c.S1 --- 4.17877850507981 --- --- --- --- 3.82486391067505 12.1908807754517 3.20002412796021 3.27351474761963 0.366210997104645 0.24609400331974 0.366210997104645 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC584.03c /DEF=RanGTP-binding protein (predicted) --- --- --- --- --- --- SPCC584.03c // |||RanGTP-binding protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.17877850507981 3.1872717723178 -1.43701414706295 -1.19526095983318 -1.16842727330199 Max fold change at or above threshold 4 4.17877850507981 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778944_at SPAC1782.08c.S1 --- 4.17594114961735 --- --- --- --- 1.37755286693573 0.32987841963768 3.31656885147095 0.875113010406494 0.5 0.753906011581421 0.5 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1782.08c /DEF=exonuclease (predicted) --- --- --- --- --- --- SPAC1782.08c // |||exonuclease |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.53461865005572 -4.17594114961735 -1.99148242055807 2.4075800871791 -1.57414282561729 Max fold change at or above threshold 1 4.17594114961735 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776834_at SPBC11G11.06c.S1 --- 4.17513601130585 --- --- --- --- 0.534961998462677 2.23353910446167 0.526448011398315 0.724809050559998 0.805419981479645 0.753906011581421 0.943848013877869 0.904541015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11G11.06c /GEN=sme1 /DEF=small nuclear ribonucleoprotein (snRNP) (subunit E) --- --- --- --- --- --- SPBC11G11.06c // |sme1||small nuclear ribonucleoprotein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.95719271358285 4.17513601130585 -1.3149811411897 -1.01617251253689 1.35487951040052 Max fold change at or above threshold 0 4.17513601130585 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774373_at YNL130C.S1 Cholinephosphotransferase, required for phosphatidylcholine biosynthesis and for inositol-dependent regulation of EPT1 transcription 4.17413378535113 1794.12127685547 490.479110717773 CPT1 6656 // phosphatidylcholine biosynthesis // traceable author statement 5783 // endoplasmic reticulum // traceable author statement 4142 // diacylglycerol cholinephosphotransferase activity // traceable author statement 468.799957275391 1956.83374023438 1631.40881347656 512.158264160156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL130C /GEN=CPT1 /DB_XREF=GI:42742307 /SEG=NC_001146:-379558,380831 /DEF=Cholinephosphotransferase, required for phosphatidylcholine biosynthesis and for inositol-dependent regulation of EPT1 transcription /NOTE=Cpt1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS]; go_function: diacylglycerol cholinephosphotransferase activity [goid GO:0004142] [evidence TAS]; go_process: phosphatidylcholine biosynthesis [goid GO:0006656] [evidence TAS] --- --- --- --- --- S0005074 // span:41-63,135-157,177-199,219-241,262-284,288-310,323-342,352-374 // numtm:8 S0005074 // CPT1 SGDID:S0005074, Chr XIV from 380831-380782,380689-379558, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YNL130C // cdna:known chromosome:SGD1:XIV:379558:380831:-1 gene:YNL130C // ensembl // 11 // --- --- No cerevisiae_gene 1.47523001617601 4.17413378535113 -1.17330772597324 3.47996792268949 1.09248786441185 Max fold change at or above threshold 4 4.17413378535113 Max fold change at or above threshold -0.880970068504528 1.06544828837836 0.639777138648737 -0.824255358522573 1142.30019378662 764.498432568222 0.669262280376561 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769377_at YBR238C.S1 Hypothetical protein 4.17389778461944 66.9744186401367 76.4958305358887 --- --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 76.2605209350586 44.8050003051758 89.1438369750977 76.7311401367188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR238C /GEN=PRP5 /DB_XREF=GI:6319715 /SEG=NC_001134:-695064,697259 /DEF=Hypothetical ORF /NOTE=Ybr238cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000442 // YBR238C SGDID:S0000442, Chr II from 697297-695102, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021329 // cdna:Genscan chromosome:SGD1:II:695102:697297:-1 // ensembl // 11 // --- /// GENEFINDER00000022373 // cdna:GeneFinder chromosome:SGD1:II:695102:697297:-1 // ensembl // 11 // --- /// YBR238C // cdna:known chromosome:SGD1:II:695102:697297:-1 gene:YBR238C // ensembl // 11 // --- --- No cerevisiae_gene 4.17389778461944 -1.70205379791615 1.58752139312233 1.1689382118306 1.0061712036043 Max fold change at or above threshold 4 4.17389778461944 Max fold change at or above threshold 0.23920422555778 -1.42347742147621 0.92019289475697 0.264080301161461 71.7351245880127 18.9185468462922 0.263727803568262 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776627_at SPCC18.04.S1 --- 4.17002218663367 --- --- --- --- 1.28227388858795 1.72832071781158 1.30535840988159 0.724719882011414 0.665526986122131 0.753906011581421 0.633789002895355 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18.04 /GEN=pof6 /DEF=F-box protein --- --- --- --- --- --- SPCC18.04 // |pof6||F-box protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -4.17002218663367 1.34785612745716 -2.54896400357635 1.01800280072697 -1.76933725762992 Max fold change at or above threshold 0 4.17002218663367 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779179_at SPAC31G5.10.S1 --- 4.16958056707374 --- --- --- --- 5.67951345443726 7.53089475631714 6.60344743728638 5.92285966873169 0.432372987270355 0.274170011281967 0.219482004642487 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31G5.10 /GEN=eta2 /DEF=Myb family --- --- --- --- --- --- AB084881 // Schizosaccharomyces pombe mRNA for eta2, complete cds. // gb // 10 // --- /// SPAC31G5.10 // |eta2||Myb family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- AB084885 // gb // 9 // Negative Strand Matching Probes /// SPNCRNA.74 // sanger // 9 // Negative Strand Matching Probes No No -4.16958056707374 1.32597533516422 -1.5051095086054 1.16267836853653 1.0428463135525 Max fold change at or above threshold 4 4.16958056707374 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779512_at YBR254C.S1 One of 10 subunits of the transport protein particle (TRAPP) complex of the cis-Golgi which mediates vesicle docking and fusion; mutations in the human homolog cause the spondyloepiphyseal dysplasia tarda (SEDL) disorder 4.16823496617479 65.2078456878662 237.705184936523 TRS20 6888 // ER to Golgi transport // inferred from mutant phenotype 30008 // TRAPP complex // inferred from direct assay --- 227.883010864258 54.6713447570801 75.7443466186523 247.527359008789 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR254C /GEN=TRS20 /DB_XREF=GI:6319731 /SEG=NC_001134:-723693,724220 /DEF=Trapp subunit of 20 kDa /NOTE=Trs20p; go_component: TRAPP [goid GO:0030008] [evidence IDA] [pmid 10727015]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 10727015] --- --- --- --- --- --- S0000458 // TRS20 SGDID:S0000458, Chr II from 724258-723731, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021343 // cdna:Genscan chromosome:SGD1:II:723731:724258:-1 // ensembl // 11 // --- /// YBR254C // cdna:known chromosome:SGD1:II:723731:724258:-1 gene:YBR254C // ensembl // 11 // --- --- No cerevisiae_gene -1.0056743730335 -4.16823496617479 1.08527526892189 -3.00858111578377 1.08620365366435 Max fold change at or above threshold 4 4.16823496617479 Max fold change at or above threshold 0.762104682064299 -0.965115973218972 -0.754981604662014 0.957992895816687 151.456515312195 100.283461512201 0.662127088461582 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776194_at SPBC18H10.17c.S1 --- 4.16627028990749 --- --- --- --- 1.39719390869141 1.58714914321899 1.5084992647171 4.53585958480835 0.7470703125 0.919434010982513 0.904784977436066 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18H10.17c /DEF=sequence orphan --- --- --- --- --- --- SPBC18H10.17c // |||mitochondrial ribosomal protein subunit Mrp49p |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.16627028990749 1.13595481153042 -3.36722857232944 1.07966349934201 3.24640664162112 Max fold change at or above threshold 1 4.16627028990749 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779451_at SPAC13G6.02c.S1 --- 4.16592551053298 --- --- --- --- 0.852815330028534 0.922367095947266 0.368412226438522 0.204712092876434 0.888427972793579 0.780517995357513 0.981445014476776 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G6.02c /GEN=rps101 /DEF=40S ribosomal protein S3a --- --- --- --- --- --- SPAC13G6.02c // |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.48525590851522 1.08155548272849 -2.62383745847034 -2.3148399233999 -4.16592551053298 Max fold change at or above threshold 0 4.16592551053298 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774963_at SPAC167.02.S1 --- 4.16589373395361 --- --- --- --- 2.74049854278564 3.93218111991882 0.657841682434082 4.5680832862854 0.398925989866257 0.398925989866257 0.665526986122131 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC167.02 /GEN=ptb1 /DEF=geranylgeranyltransferase (beta subunit) (PMID 8740421) --- --- --- --- --- --- SPAC167.02 // |ptb1||geranylgeranyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.17136985009505 1.43484152920653 -2.98585170080397 -4.16589373395361 1.66688039236907 Max fold change at or above threshold 3 4.16589373395361 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775404_at SPAC17G8.14c.S1 --- 4.16531737816563 --- --- --- --- 13.2359027862549 6.60985088348389 6.54098844528198 4.33522605895996 0.01025390625 0.0952147990465164 0.171387001872063 0.149657994508743 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G8.14c /GEN=pck1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPAC17G8.14c // |pck1|SPAC22H10.01c|protein kinase C |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.16531737816563 -2.00245104157003 -2.07355778866619 -2.02353251301062 -3.05310556041228 Max fold change at or above threshold 4 4.16531737816563 Max fold change at or above threshold PAAMAA No 4 0 PAAA 3 1 0 No No x = 1
1776942_at SPCC1494.03.S1 --- 4.16528024879746 --- --- --- --- 2.1886305809021 1.48466467857361 3.53887915611267 0.525446176528931 0.753906011581421 0.696289002895355 0.696289002895355 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1494.03 /DEF=hypothetical protein --- --- --- --- --- --- SPCC1494.03 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.24330133824167 -1.47415818028676 -3.9133771722983 1.61693763533818 -4.16528024879746 Max fold change at or above threshold 1 4.16528024879746 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773798_at SPACUNK4.13c.S1 --- 4.16522857668381 --- --- --- --- 0.920203447341919 1.20765495300293 0.401903867721558 0.220925077795982 0.696289002895355 0.850341975688934 0.953857004642487 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPACUNK4.13c /DEF=GTP binding --- --- --- --- --- --- SPACUNK4.13c // |||GTP binding|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- AB084868 // gb // 11 // Negative Strand Matching Probes /// SPNCRNA.56 // sanger // 11 // Negative Strand Matching Probes No No -2.83281859491504 1.3123782099397 -4.08752496132315 -2.289610827979 -4.16522857668381 Max fold change at or above threshold 0 4.16522857668381 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779152_at YGR245C.S1 Highly conserved nuclear protein required for actin cytoskeleton organization and passage through Start, plays a critical role in G1 events, binds Nap1p, also involved in 60S ribosome biogenesis 4.16450188702721 222.610496520996 261.678291320801 SDA1 7089 // traversing start control point of mitotic cell cycle // inferred from mutant phenotype /// 30036 // actin cytoskeleton organization and biogenesis // inferred from mutant phenotype /// 42255 // ribosome assembly // traceable author statement 5634 // nucleus // inferred from direct assay --- 275.196014404297 290.4873046875 154.733688354492 248.160568237305 0.000244141003349796 0.00195312988944352 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR245C /GEN=SDA1 /DB_XREF=GI:6321684 /SEG=NC_001139:-979769,982072 /DEF=Severe Depolymerization of Actin /NOTE=Sda1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10704371]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence IMP] [pmid 10704371]; go_process: ribosome assembly [goid GO:0042255] [evidence TAS] [pmid 15116429]; go_process: traversing start control point of mitotic cell cycle [goid GO:0007089] [evidence IMP] [pmid 11160833] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 8.60000038146973 --- S0003477 // SDA1 SGDID:S0003477, Chr VII from 982073-979770, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019528 // cdna:Genscan chromosome:SGD1:VII:979770:982073:-1 // ensembl // 11 // --- /// GENEFINDER00000021607 // cdna:GeneFinder chromosome:SGD1:VII:979770:984277:-1 // ensembl // 11 // --- /// YGR245C // cdna:known chromosome:SGD1:VII:979770:982073:-1 gene:YGR245C // ensembl // 11 // --- --- No cerevisiae_gene 4.16450188702721 1.05556508627606 -1.51323904588454 -1.77851389268139 -1.10894336017614 Max fold change at or above threshold 4 4.16450188702721 Max fold change at or above threshold 0.543211834983892 0.794528101252361 -1.43661729965145 0.0988773634151923 242.144393920898 60.8448092526896 0.25127490365342 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772152_at SPAC17A5.18c.S1 --- 4.16315227710366 --- --- --- --- 1.28507208824158 2.75148034095764 5.34995079040527 2.42369771003723 0.665526986122131 0.805419981479645 0.366210997104645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A5.18c /DEF=sequence orphan --- --- --- --- --- --- SPAC17A5.18c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.82987149016428 2.14110972149634 -1.91606404366507 4.16315227710366 1.88604027137006 Max fold change at or above threshold 2 4.16315227710366 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770358_at SPAC7D4.02c.S1 --- 4.16282565639834 --- --- --- --- 3.07074570655823 9.14701461791992 12.7829790115356 5.62850379943848 0.432372987270355 0.111571997404099 0.014160200022161 0.091552734375 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC7D4.02c /DEF=hypothetical protein --- --- --- --- --- --- SPAC7D4.02c // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.12078149538174 2.97876004463168 3.25008282451351 4.16282565639834 1.83294363561842 Max fold change at or above threshold 4 4.16282565639834 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1773380_s_at SPAC17A5.03.S1 --- 4.16163317405312 --- --- --- --- 4.71529912948608 1.13304054737091 2.42341375350952 7.58169841766357 0.24609400331974 0.780517995357513 0.633789002895355 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A5.03 /GEN=rpl301 /DEF=60S ribosomal protein L3 (PMID 8181745) --- --- --- --- --- --- SPAC17A5.03 // |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPAPB8E5.06c // |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.31357734723243 -4.16163317405312 -1.85753569323374 -1.94572599196382 1.60789341449264 Max fold change at or above threshold 2 4.16163317405312 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773629_at SPBC1347.08c.S1 --- 4.16118580734627 --- --- --- --- 2.6487500667572 0.939652562141418 11.0219411849976 8.25088787078857 0.850341975688934 0.932372987270355 0.5 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1347.08c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC1347.08c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.96034119126746 -2.81886111258063 -1.31312101811453 4.16118580734627 3.11501185949565 Max fold change at or above threshold 3 4.16118580734627 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771267_at SPCC188.06c.S1 --- 4.16098549831637 --- --- --- --- 2.11719560623169 7.041015625 1.96220254898071 3.48812460899353 0.398925989866257 0.171387001872063 0.398925989866257 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC188.06c /GEN=srp54 /DEF=SRP receptor activity --- --- --- --- --- --- SPCC188.06c // |srp54||signal recognition particle subunit Srp54|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.28987998670053 3.32563302336151 -4.16098549831637 -1.07898932621991 1.64752118260906 Max fold change at or above threshold 2 4.16098549831637 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770416_at SPCC1620.09c.S1 --- 4.1608521689079 --- --- --- --- 5.42208528518677 12.1778364181519 11.9855546951294 4.2928318977356 0.432372987270355 0.303710997104645 0.0676269978284836 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1620.09c /DEF=transcription initiation factor activity --- --- --- --- --- --- SPCC1620.09c // |tfg1||transcription factor TFIIF complex |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -4.1608521689079 2.2459691756273 -1.88349201453598 2.21050648684449 -1.26305558064056 Max fold change at or above threshold 4 4.1608521689079 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773571_at SPBC14C8.16c.S1 --- 4.15913137726821 --- --- --- --- 2.14336490631104 0.956855297088623 2.28147888183594 3.99701404571533 0.466064006090164 0.828612983226776 0.5 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14C8.16c /GEN=bot1 /DEF=involved in growth site determination (AF352796 Catanuto P., David W., You M., Verde F. unpublished) --- --- --- --- --- --- AF352796 // Schizosaccharomyces pombe Bot1p mRNA, complete cds. // gb // 11 // --- /// SPBC14C8.16c // |bot1||mitochondrial ribosomal protein subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.69243655452482 -2.24000944848458 -4.15913137726821 1.06443791960866 1.86483133784001 Max fold change at or above threshold 1 4.15913137726821 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773202_at SPBC887.19.S1 --- 4.15764009511699 --- --- --- --- 8.69150447845459 9.10837650299072 5.02422189712524 3.80921506881714 0.194580003619194 0.018554700538516 0.274170011281967 0.194580003619194 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC887.19 /DEF=involved in N-linked glycosylation (predicted) --- --- --- --- --- --- SPBC887.19 // |rft1||flippase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.15764009511699 1.04796316052871 -1.15493639564083 -1.72992050439247 -2.28170484507548 Max fold change at or above threshold 4 4.15764009511699 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1771110_at SPAC140.02.S1 --- 4.15718765045514 --- --- --- --- 2.10312628746033 6.76159477233887 8.74309062957764 3.52610731124878 0.274170011281967 0.129638999700546 0.0805663987994194 0.00805663969367743 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC140.02 /GEN=gar2 /DEF=GAR family --- --- --- --- --- --- SPAC140.02 // |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.14458532679012 3.21502080624172 2.4282826583515 4.15718765045514 1.67660274719251 Max fold change at or above threshold 3 4.15718765045514 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1770829_at YCR075W-A.S1 Identified by homology to Ashbya gossypii 4.15619769343741 152.353485107422 604.191040039063 --- --- --- --- 571.210571289063 137.435852050781 167.271118164063 637.171508789063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR075W-A /GEN=ERS1 /DB_XREF=GI:33438776 /SEG=NC_001135:+248971,249198 /DEF=Identified by homology to Ashbya gossypii /NOTE=Ycr075w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028519 // YCR075W-A SGDID:S0028519, Chr III from 248971-249198, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022511 // cdna:Genscan chromosome:SGD1:III:248971:249198:1 // ensembl // 11 // --- /// GENEFINDER00000023392 // cdna:GeneFinder chromosome:SGD1:III:248971:249198:1 // ensembl // 11 // --- /// YCR075W-A // cdna:known chromosome:SGD1:III:248971:249198:1 gene:YCR075W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.75510633120651 -4.15619769343741 1.04785358330215 -3.41487865662983 1.11547569463069 Max fold change at or above threshold 4 4.15619769343741 Max fold change at or above threshold 0.734898355682399 -0.917341316296587 -0.803699353982654 0.986142314596841 378.272262573242 262.537407008708 0.694043505127143 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775576_at YDR151C.S1 Member of the CCCH zinc finger family; has similarity to mammalian Tis11 protein, which activates transcription and also has a role in mRNA degradation; may function with Tis11p in iron homeostasis 4.15331694362378 2054.26220703125 526.54377746582 CTH1 6350 // transcription // inferred from sequence similarity /// 6879 // iron ion homeostasis // inferred from genetic interaction 5634 // nucleus // inferred from curator 3700 // transcription factor activity // inferred from sequence similarity 501.261810302734 2026.62524414063 2081.89916992188 551.825744628906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR151C /GEN=CTH1 /DB_XREF=GI:6320355 /SEG=NC_001136:-764172,765149 /DEF=Putative transcription factor, member of the CCCH zinc finger family; has similarity to mammalian Tis11 protein, which activates transcription and also has a role in mRNA degradation /NOTE=Cth1p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 8890739]; go_function: transcription factor activity [goid GO:0003700] [evidence ISS] [pmid 8890739]; go_process: transcription [goid GO:0006350] [evidence ISS] [pmid 8890739] --- --- --- --- --- --- S0002558 // CTH1 SGDID:S0002558, Chr IV from 765150-764173, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023874 // cdna:GeneFinder chromosome:SGD1:IV:764173:765147:-1 // ensembl // 11 // --- /// GENSCAN00000025209 // cdna:Genscan chromosome:SGD1:IV:764173:765147:-1 // ensembl // 11 // --- /// YDR151C // cdna:known chromosome:SGD1:IV:764173:765150:-1 gene:YDR151C // ensembl // 11 // --- --- No cerevisiae_gene 2.49683419169166 4.04304737062785 1.7567292794484 4.15331694362378 1.10087330270709 Max fold change at or above threshold 4 4.15331694362378 Max fold change at or above threshold -0.894151499412413 0.834190694251853 0.896819872333589 -0.836859067173029 1290.40299224854 882.55869666872 0.68394036744355 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Sc-EAF5-5_at AFFX-r2-Sc-EAF5-5 Esa1p-associated factor, subunit of the NuA4 acetyltransferase complex 4.15309158048221 37.7859020233154 115.128265380859 EAF5 --- 5634 // nucleus // inferred from direct assay /// 43189 // H4/H2A histone acetyltransferase complex // inferred from physical interaction --- 105.285301208496 25.3510665893555 50.2207374572754 124.971229553223 0.000244141003349796 0.00585938012227416 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=EAF5 SGD:YEL018W Esa1p-associated factor, subunit of the NuA4 acetyltransferase complex (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- S0000744 // EAF5 SGDID:S0000744, Chr V from 121471-122310, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016789 // cdna:Genscan chromosome:SGD1:V:121570:122310:1 // ensembl // 9 // --- /// YEL018W // cdna:known chromosome:SGD1:V:121471:122310:1 gene:YEL018W // ensembl // 11 // --- YEL018C-A // ensembl // 11 // Negative Strand Matching Probes AFFX_control cerevisiae_gene 1.1039225127908 -4.15309158048221 1.14052697997928 -2.09645072014456 1.18697698651916 Max fold change at or above threshold 4 4.15309158048221 Max fold change at or above threshold 0.62005203597131 -1.09921433588773 -0.564304744194728 1.04346704411115 76.4570837020874 46.4932228812851 0.608095687542104 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 No No 3 < x
1778609_at SPAC1B3.08.S1 --- 4.15081005724419 --- --- --- --- 9.40650367736816 12.0736351013184 2.26618504524231 3.08189821243286 0.107177734375 0.219482004642487 0.274170011281967 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B3.08 /DEF=PINTPCI domain (inferred from context) --- --- --- --- --- --- SPAC1B3.08 // |||PINT/PCI domain |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.66442907333381 1.2835412088731 -1.23944579117784 -4.15081005724419 -3.05217856950007 Max fold change at or above threshold 3 4.15081005724419 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778970_at SPBC1734.13.S1 --- 4.15017831588269 --- --- --- --- 2.07370924949646 0.995359241962433 4.74890470504761 1.78906762599945 0.665526986122131 0.753906011581421 0.466064006090164 0.65771484375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1734.13 /GEN=atp3 /DEF=F1-ATPase gamma subunit predicted --- --- --- --- --- --- SPBC1734.13 // |atp3||F1-ATPase gamma subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 4.15017831588269 -2.0833777013091 3.22852842574422 2.29005329758776 -1.15910053894022 Max fold change at or above threshold 1 4.15017831588269 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774058_at SPBC2G5.03.S1 --- 4.14887913995083 --- --- --- --- 2.46220207214355 2.39573454856873 0.593461990356445 3.74417424201965 0.567627012729645 0.567627012729645 0.725830018520355 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G5.03 /DEF=hypothetical protein --- --- --- --- --- --- SPBC2G5.03 // |||ATP binding protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.73760715871263 -1.0277441103041 1.73883184871365 -4.14887913995083 1.52066082811799 Max fold change at or above threshold 1 4.14887913995083 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771017_at SPCC31H12.02c.S1 --- 4.14652444569407 --- --- --- --- 2.29953122138977 2.02195310592651 0.991616725921631 0.925138056278229 0.696289002895355 0.725830018520355 0.780517995357513 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC31H12.02c /DEF=ion channel (predicted) --- --- --- --- --- --- SPCC31H12.02c // |||ion channel |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.1496505989207 -1.13728217269216 -4.14652444569407 -2.31897179754863 -2.48560872162219 Max fold change at or above threshold 0 4.14652444569407 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776917_at SPBC12C2.14c.S1 --- 4.14477647688043 --- --- --- --- 1.09349477291107 0.765486776828766 4.53229141235352 0.374971866607666 0.696289002895355 0.850341975688934 0.49169921875 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12C2.14c /DEF=dubious --- --- --- --- --- --- SPBC12C2.14c // |||dubious|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.81593354510935 -1.42849596624146 3.2438100539426 4.14477647688043 -2.91620484172269 Max fold change at or above threshold 1 4.14477647688043 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775598_at YLL007C.S1 Hypothetical protein 4.14089743877352 301.124366760254 101.522830963135 --- --- 5737 // cytoplasm // inferred from direct assay --- 89.4436874389648 231.871597290039 370.377136230469 113.601974487305 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL007C /GEN=DRS1 /DB_XREF=GI:6323022 /SEG=NC_001144:-134301,136298 /DEF=Hypothetical ORF /NOTE=Yll007cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003930 // YLL007C SGDID:S0003930, Chr XII from 136298-134301, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017730 // cdna:Genscan chromosome:SGD1:XII:134301:135713:-1 // ensembl // 11 // --- /// YLL007C // cdna:known chromosome:SGD1:XII:134301:136298:-1 gene:YLL007C // ensembl // 11 // --- --- No cerevisiae_gene 1.91518346427618 2.59237520197571 1.58944784959999 4.14089743877352 1.2700949361555 Max fold change at or above threshold 4 4.14089743877352 Max fold change at or above threshold -0.869015716093513 0.237278438924812 1.31310598092609 -0.681368703757386 201.323598861694 128.743254409326 0.639484169452832 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772026_at SPBC1861.01c.S1 --- 4.14020969836738 --- --- --- --- 0.556405305862427 1.83096063137054 0.797949433326721 0.434376657009125 0.962401986122131 0.780517995357513 0.976073980331421 0.985840022563934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1861.01c /DEF=AT hook protein (inferred from context) --- --- --- --- --- --- SPBC1861.01c // |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.42137778829026 3.2906958508107 4.14020969836738 1.43411542794313 -1.28092819189116 Max fold change at or above threshold 0 4.14020969836738 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771941_at SPAC24C9.11.S1 --- 4.14017960878346 --- --- --- --- 0.565964221954346 0.206818506121635 0.218867540359497 2.34319353103638 0.753906011581421 0.962401986122131 0.929931640625 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24C9.11 /DEF=MIF4G domain --- --- --- --- --- --- SPAC24C9.11 // |||MIF4G domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.99188043645853 -2.73652601291631 -3.6205789099356 -2.58587555297022 4.14017960878346 Max fold change at or above threshold 0 4.14017960878346 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774042_at YPL124W.S1 Inner plaque spindle pole body (SPB) component, links the central plaque component Spc42p to the inner plaque component Spc110p; required for SPB duplication 4.13902903283143 57.5610504150391 216.09691619873 SPC29 7020 // microtubule nucleation // inferred from physical interaction /// 7103 // spindle pole body duplication in nuclear envelope // inferred from mutant phenotype 5823 // central plaque of spindle pole body // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from physical interaction 212.483840942383 51.3366394042969 63.7854614257813 219.709991455078 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL124W /GEN=SPC29 /DB_XREF=GI:6325133 /SEG=NC_001148:+316754,317515 /DEF=spindle pole body component /NOTE=Spc29p; go_component: central plaque of spindle pole body [goid GO:0005823] [evidence IDA] [pmid 10339566]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 10339566]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752]; go_process: spindle pole body duplication (sensu Saccharomyces) [goid GO:0007103] [evidence IMP] [pmid 10330408] --- --- --- --- --- --- S0006045 // SPC29 SGDID:S0006045, Chr XVI from 316754-317515, Verified ORF // sgd // 11 // --- /// GENSCAN00000017095 // cdna:Genscan chromosome:SGD1:XVI:316754:317515:1 // ensembl // 11 // --- /// YPL124W // cdna:known chromosome:SGD1:XVI:316754:317515:1 gene:YPL124W // ensembl // 11 // --- GENEFINDER00000020811 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.66868263757562 -4.13902903283143 -1.04031652638862 -3.33122683747647 1.03400800023497 Max fold change at or above threshold 4 4.13902903283143 Max fold change at or above threshold 0.82485331432903 -0.932109918936901 -0.796382320936696 0.903638925544567 136.828983306885 91.7191654822153 0.670319717837151 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773604_at SPAC13G6.11c.S1 --- 4.13865223668796 --- --- --- --- 3.44766211509705 0.833039820194244 1.83373355865479 4.76146173477173 0.432372987270355 0.828612983226776 0.780517995357513 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G6.11c /DEF=mevalonate kinase activity (predicted) --- --- --- --- --- --- AB000541 // Schizosaccharomyces pombe mRNA for putative mevalonate kinase, complete cds. // gb // 11 // --- /// SPAC13G6.11c // |erg12||mevalonate kinase Erg12 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.27285198449186 -4.13865223668796 -3.3179887089367 -1.88013253006409 1.38106971501693 Max fold change at or above threshold 2 4.13865223668796 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770387_at SPBC800.07c.S1 --- 4.13614179262021 --- --- --- --- 1.2980147600174 0.362343102693558 1.28253841400146 0.549473762512207 0.870360970497131 0.991943001747131 0.665526986122131 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC800.07c /DEF=mitochondrial translation elongation factor ts (predicted) --- --- --- --- --- --- SPBC800.07c // |tsf1||mitochondrial translation elongation factor EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.13614179262021 -3.58228085581957 -4.01998114157699 -1.0120669648932 -2.36228706186596 Max fold change at or above threshold 0 4.13614179262021 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776067_at SPAC26H5.03.S1 --- 4.13601005043674 --- --- --- --- 5.18284273147583 1.25310206413269 10.5502319335938 3.77784729003906 0.24609400331974 0.828612983226776 0.194580003619194 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26H5.03 /DEF=WD repeat protein --- --- --- --- --- --- SPAC26H5.03 // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.26529952639608 -4.13601005043674 1.07894162307487 2.03560719091886 -1.3719037148858 Max fold change at or above threshold 3 4.13601005043674 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771180_at SPAC1F12.06c.S1 --- 4.13588944830279 --- --- --- --- 2.36783647537231 5.82553148269653 9.79310989379883 4.96605634689331 0.5 0.303710997104645 0.466064006090164 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F12.06c /DEF=conserved protein (broad species distribution) --- --- --- --- --- --- SPAC1F12.06c // |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.26092546903768 2.46027609730969 -2.68036235022961 4.13588944830279 2.09729700447851 Max fold change at or above threshold 3 4.13588944830279 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777704_at SPAC12D12.09.S1 --- 4.13262511583601 --- --- --- --- 1.33554196357727 5.51929426193237 0.577035069465637 1.47255384922028 0.696289002895355 0.466064006090164 0.850341975688934 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12D12.09 /DEF=HORMA domain protein --- --- --- --- --- --- SPAC12D12.09 // |||DNA polymerase zeta |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.07536557408158 4.13262511583601 -1.92009966461397 -2.31449011377081 1.10258897839198 Max fold change at or above threshold 1 4.13262511583601 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775287_at SPAC664.07c.S1 --- 4.13005182065129 --- --- --- --- 5.50717115402222 6.19417095184326 3.05703949928284 1.33343875408173 0.219482004642487 0.398925989866257 0.274170011281967 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC664.07c /GEN=rad9 /DEF=involved in DNA repair --- --- --- --- --- --- X77276 // Schizosaccharomyces pombe rad9 gene. // gb // 11 // --- /// SPAC664.07c // |rad9||checkpoint clamp complex protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.41129160668867 1.12474640402619 -2.63567831254515 -1.80147203047725 -4.13005182065129 Max fold change at or above threshold 3 4.13005182065129 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770611_at YBR251W.S1 Mitochondrial ribosomal protein of the small subunit 4.12878701273479 140.137645721436 394.029418945313 MRPS5 6412 // protein biosynthesis // inferred from direct assay 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // inferred from direct assay 362.342987060547 87.7601547241211 192.51513671875 425.715850830078 0.000244141003349796 0.000244140625 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR251W /GEN=MRPS5 /DB_XREF=GI:6319728 /SEG=NC_001134:+721347,722270 /DEF=Mitochondrial ribosomal protein of the small subunit /NOTE=Mrps5p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 11278769]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 11278769]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 11278769] --- --- --- --- --- --- S0000455 // MRPS5 SGDID:S0000455, Chr II from 721385-722308, Verified ORF // sgd // 11 // --- /// GENSCAN00000021340 // cdna:Genscan chromosome:SGD1:II:721385:722308:1 // ensembl // 11 // --- /// GENEFINDER00000022159 // cdna:GeneFinder chromosome:SGD1:II:721385:722308:1 // ensembl // 11 // --- /// YBR251W // cdna:known chromosome:SGD1:II:721385:722308:1 gene:YBR251W // ensembl // 11 // --- --- No cerevisiae_gene 1.11105859345226 -4.12878701273479 1.38486885020157 -1.88215323343589 1.17489744808816 Max fold change at or above threshold 4 4.12878701273479 Max fold change at or above threshold 0.61508555395132 -1.15788211646929 -0.481484415958964 1.02428097847693 267.083532333374 154.871877765986 0.579863072848217 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779227_at YJL194W.S1 Essential ATP-binding protein required for DNA replication, component of the pre-replicative complex (pre-RC) which requires ORC to associate with chromatin and is in turn required for Mcm2-7p DNA association; homologous to S. pombe Cdc18p 4.12863792062479 65.1290264129639 90.6767845153809 CDC6 6267 // pre-replicative complex formation and maintenance // traceable author statement 5656 // pre-replicative complex // traceable author statement 3689 // DNA clamp loader activity // traceable author statement /// 5515 // protein binding // inferred from physical interaction /// 16887 // ATPase activity // traceable author statement 76.4882888793945 47.0967140197754 83.1613388061523 104.865280151367 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL194W /GEN=CDC6 /DB_XREF=GI:6322266 /SEG=NC_001142:+69337,70878 /DEF=Essential ATP-binding protein required for DNA replication, component of the pre-replicative complex (pre-RC) which requires ORC to associate with chromatin and is in turn required for Mcm2-7p DNA association; homologous to S. pombe Cdc18p /NOTE=Cdc6p; go_component: pre-replicative complex [goid GO:0005656] [evidence TAS] [pmid 9442876]; go_function: ATPase activity [goid GO:0016887] [evidence TAS] [pmid 9914182]; go_function: DNA clamp loader activity [goid GO:0003689] [evidence TAS] [pmid 9442876]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 9312054]; go_process: pre-replicative complex formation and maintenance [goid GO:0006267] [evidence TAS] [pmid 9442876] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 0.400000005960464 --- S0003730 // CDC6 SGDID:S0003730, Chr X from 69337-70878, Verified ORF // sgd // 11 // --- /// GENSCAN00000023992 // cdna:Genscan chromosome:SGD1:X:69337:70878:1 // ensembl // 11 // --- /// GENEFINDER00000024277 // cdna:GeneFinder chromosome:SGD1:X:69337:70878:1 // ensembl // 11 // --- /// YJL194W // cdna:known chromosome:SGD1:X:69337:70878:1 gene:YJL194W // ensembl // 11 // --- --- No cerevisiae_gene 4.12863792062479 -1.62406848272425 -1.32159343560907 1.08724276650089 1.37099785715846 Max fold change at or above threshold 4 4.12863792062479 Max fold change at or above threshold -0.0593273925137659 -1.2919762367716 0.220532646261966 1.1307709830234 77.9029054641724 23.8442399849209 0.306076388843891 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769326_at SPBC1105.05.S1 --- 4.1281472520761 --- --- --- --- 0.656209349632263 0.601813852787018 1.71817994117737 0.843816876411438 0.780517995357513 0.932372987270355 0.850341975688934 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1105.05 /GEN=exg1 /DEF=glucan 1,3-beta-glucosidase III precursor --- --- --- --- --- --- D89127 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0482. // gb // 11 // --- /// SPBC1105.05 // |exg1||glucan 1,3-beta-glucosidase I/II precursor|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.17140532888088 -1.09038591683016 4.1281472520761 2.6183411469834 1.28589584541017 Max fold change at or above threshold 0 4.1281472520761 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775179_at YHR127W.S1 (H)igh copy (S)uppressor of (N)34 dominant negative allele of SEC4. Suppression is very specific to this allele. It has no affect on the analogous YPT1 allele. No homology or known function. 4.12811652382636 44.7685623168945 178.266044616699 --- --- 5634 // nucleus // inferred from direct assay --- 175.613891601563 46.9962005615234 42.5409240722656 180.918197631836 0.000732421991415322 0.0107421996071935 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR127W /GEN=NDT80 /DB_XREF=GI:6321919 /SEG=NC_001140:+360915,361646 /DEF=(H)igh copy (S)uppressor of (N)34 dominant negative allele of SEC4. Suppression is very specific to this allele. It has no affect on the analogous YPT1 allele. No homology or known function. /NOTE=Yhr127wp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10684247]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001169 // YHR127W SGDID:S0001169, Chr VIII from 360915-361646, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016662 // cdna:Genscan chromosome:SGD1:VIII:360984:361646:1 // ensembl // 11 // --- /// YHR127W // cdna:known chromosome:SGD1:VIII:360915:361646:1 gene:YHR127W // ensembl // 11 // --- --- No cerevisiae_gene -1.19225032193984 -3.73676785576876 1.02576932621267 -4.12811652382636 1.03020436471112 Max fold change at or above threshold 4 4.12811652382636 Max fold change at or above threshold 0.831056065476271 -0.836560189567448 -0.894325893757298 0.899830017848474 111.517303466797 77.1266714695505 0.691611696766988 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1773587_at YPR021C.S1 Mitochondrial transporter, acts both as a glutamate uniporter and as an aspartate-glutamate exchanger; involved in nitrogen metabolism, ornithine synthesis, and the malate-aspartate NADH shuttle 4.12788058653707 313.98030090332 943.978942871094 AGC1 15810 // L-aspartate transport // inferred from direct assay /// 15813 // L-glutamate transport // inferred from direct assay 5743 // mitochondrial inner membrane // inferred from sequence similarity 5313 // L-glutamate transporter activity // inferred from direct assay /// 15183 // L-aspartate transporter activity // inferred from direct assay 897.940063476563 320.678283691406 307.282318115234 990.017822265625 0.000732421991415322 0.014160200022161 0.0107421996071935 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR021C /GEN=AGC1 /DB_XREF=GI:6325278 /SEG=NC_001148:-600644,603352 /DEF=Mitochondrial transporter, acts both as a glutamate uniporter and as an aspartate-glutamate exchanger; involved in nitrogen metabolism, ornithine synthesis, and the malate-aspartate NADH shuttle /NOTE=Agc1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence ISS] [pmid 10930523]; go_function: L-aspartate transporter activity [goid GO:0015183] [evidence IDA] [pmid 14622413]; go_function: L-glutamate transporter activity [goid GO:0005313] [evidence IDA] [pmid 14622413]; go_process: L-aspartate transport [goid GO:0015810] [evidence IDA] [pmid 14622413]; go_process: L-glutamate transport [goid GO:0015813] [evidence IDA] [pmid 14622413] --- --- --- --- --- --- S0006225 // AGC1 SGDID:S0006225, Chr XVI from 603354-600646, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017201 // cdna:Genscan chromosome:SGD1:XVI:600646:603354:-1 // ensembl // 10 // --- /// YPR021C // cdna:known chromosome:SGD1:XVI:600646:603354:-1 gene:YPR021C // ensembl // 10 // --- GENEFINDER00000020726 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -4.12788058653707 -2.80012744592541 1.11098563402971 -2.92219893739484 1.10254332391915 Max fold change at or above threshold 4 4.12788058653707 Max fold change at or above threshold 0.735451212519632 -0.843025805793815 -0.879656021998282 0.987230615272465 628.979621887207 365.70806738887 0.581430708822632 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1770598_at SPBC1711.12.S1 --- 4.12436849789502 --- --- --- --- 12.4437437057495 4.79361200332642 10.3980808258057 3.01712703704834 0.149657994508743 0.129638999700546 0.0461426004767418 0.219482004642487 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1711.12 /DEF=dipeptidyl peptidase (predicted) --- --- --- --- --- --- SPBC1711.12 // |||dipeptidyl peptidase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.55826278155632 -2.59590131556631 -2.35912676476254 -1.1967346584638 -4.12436849789502 Max fold change at or above threshold 4 4.12436849789502 Max fold change at or above threshold AAAPPA No 4 0 AAPA 3 1 0 No No x = 1
1771351_at SPCC1235.02.S1 --- 4.12052747677796 --- --- --- --- 1.53359389305115 1.72039330005646 0.946815192699432 3.38376212120056 0.696289002895355 0.533936023712158 0.780517995357513 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1235.02 /GEN=bio2 /DEF=biotin synthase activity --- --- --- --- --- --- SPCC1235.02 // |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- AJ224930 // gb // 9 // Negative Strand Matching Probes No No 4.12052747677796 1.12180500186634 -1.17381502076371 -1.61973942209226 2.20642644479265 Max fold change at or above threshold 1 4.12052747677796 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779257_at YOR342C.S1 Hypothetical protein 4.11921688794934 405.191070556641 268.40690612793 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 243.362152099609 395.782012939453 414.600128173828 293.45166015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR342C /GEN=RPA190 /DB_XREF=GI:6324918 /SEG=NC_001147:-966661,967620 /DEF=Hypothetical ORF /NOTE=Yor342cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.139.1.Type I dockerin domain // All alpha proteins; Type I dockerin domain; Type I dockerin domain; Type I dockerin domain // 6.0 /// scop // a.139.1.Type I dockerin domain // All alpha proteins; Type I dockerin domain; Type I dockerin domain; Type I dockerin domain // 3.09999990463257 --- S0005869 // YOR342C SGDID:S0005869, Chr XV from 967620-966661, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017794 // cdna:Genscan chromosome:SGD1:XV:966661:967620:-1 // ensembl // 11 // --- /// YOR342C // cdna:known chromosome:SGD1:XV:966661:967620:-1 gene:YOR342C // ensembl // 11 // --- --- No cerevisiae_gene 4.11921688794934 1.62630881394186 1.07339879122066 1.70363437616269 1.20582291709903 Max fold change at or above threshold 4 4.11921688794934 Max fold change at or above threshold -1.14033750938298 0.719850522232146 0.949513720608378 -0.529026733457542 336.798988342285 81.9378784560309 0.243284217863381 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777810_at SPAP27G11.04c.S1 --- 4.11539256643341 --- --- --- --- 5.67180776596069 3.27259135246277 2.37624597549438 3.89963054656982 0.432372987270355 0.725830018520355 0.696289002895355 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP27G11.04c /DEF=tRNA-specific adenosine-34 deaminase subunit (predicted) --- --- --- --- --- --- SPAP27G11.04c // |||tRNA-specific adenosine deaminase subunit |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.0950862616914 -1.73312435165252 -4.11539256643341 -2.3868773790477 -1.45444746578614 Max fold change at or above threshold 3 4.11539256643341 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779566_at SPBP4H10.11c.S1 --- 4.11218793007441 --- --- --- --- 4.24764156341553 3.66847467422485 1.8560026884079 1.84017157554626 0.171387001872063 0.533936023712158 0.432372987270355 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP4H10.11c /DEF=long-chain-fatty-acid-CoA ligase activity (predicted) --- --- --- --- --- --- SPBP4H10.11c // |||long-chain-fatty-acid-CoA ligase activity |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.19435966248826 -1.15787675822324 -4.11218793007441 -2.28859666526626 -2.30828560763666 Max fold change at or above threshold 2 4.11218793007441 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779270_at YOR299W.S1 Protein involved in bud-site selection; diploid mutants display an axial-like budding pattern 4.11152062476518 1616.39404296875 437.074142456055 BUD7 282 // bud site selection // inferred from mutant phenotype 30136 // clathrin-coated vesicle // inferred from direct assay --- 425.542694091797 1749.62756347656 1483.16052246094 448.605590820313 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR299W /GEN=BUD7 /DB_XREF=GI:6324874 /SEG=NC_001147:+878431,880671 /DEF=Protein involved in bud-site selection; diploid mutants display an axial-like budding pattern /NOTE=Bud7p; go_component: clathrin-coated vesicle [goid GO:0030136] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: bud site selection [goid GO:0000282] [evidence IMP] [pmid 8657162] --- --- --- --- --- --- S0005825 // BUD7 SGDID:S0005825, Chr XV from 878431-880671, Verified ORF // sgd // 11 // --- /// GENSCAN00000017753 // cdna:Genscan chromosome:SGD1:XV:878431:880671:1 // ensembl // 11 // --- /// GENEFINDER00000022922 // cdna:GeneFinder chromosome:SGD1:XV:878431:880671:1 // ensembl // 11 // --- /// YOR299W // cdna:known chromosome:SGD1:XV:878431:880671:1 gene:YOR299W // ensembl // 11 // --- YOR300W // ensembl // 3 // Cross Hyb Matching Probes No cerevisiae_gene 2.14952299464228 4.11152062476518 -1.1860283710866 3.48533894025917 1.05419643445586 Max fold change at or above threshold 4 4.11152062476518 Max fold change at or above threshold -0.871821948847676 1.04830906752309 0.661890007744559 -0.838377126419975 1026.7340927124 689.58048075668 0.67162519064207 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775964_x_at SPBC19G7.03c.S1 --- 4.10866364858138 --- --- --- --- 3.33602786064148 7.27643918991089 13.7066164016724 7.54692459106445 0.533936023712158 0.5 0.274170011281967 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19G7.03c /GEN=rps3002 /DEF=40S ribosomal protein S30 --- --- --- --- --- --- SPBC19G7.03c // |rps3002|rps30-2, rps30|40S ribosomal protein S30|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.40234814610735 2.18116859147325 1.13853761868569 4.10866364858138 2.26224867007354 Max fold change at or above threshold 4 4.10866364858138 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778277_at YLR452C.S1 GTPase-activating protein for Gpa1p, regulates desensitization to alpha factor pheromone; also required to prevent receptor-independent signaling of the mating pathway; member of the RGS (regulator of G-protein signaling) family 4.10832027964464 32.6438131332397 89.8655776977539 SST2 754 // adaptation to pheromone during conjugation with cellular fusion // inferred from mutant phenotype /// 754 // adaptation to pheromone during conjugation with cellular fusion // traceable author statement /// 7165 // signal transduction // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay 5096 // GTPase activator activity // inferred from direct assay 98.0923919677734 23.8765201568604 41.4111061096191 81.6387634277344 0.000244141003349796 0.00195312988944352 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR452C /GEN=SST2 /DB_XREF=GI:6323485 /SEG=NC_001144:-1039267,1041363 /DEF=Protein involved in desensitization to alpha-factor pheromone /NOTE=Sst2p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 8756677]; go_function: GTPase activator activity [goid GO:0005096] [evidence IDA] [pmid 9537998]; go_process: adaptation to pheromone during conjugation with cellular fusion [goid GO:0000754] [evidence IMP] [pmid 2830483]; go_process: adaptation to pheromone during conjugation with cellular fusion [goid GO:0000754] [evidence TAS] [pmid 9024634]; go_process: signal transduction [goid GO:0007165] [evidence IMP] [pmid 9537998] --- --- --- --- --- --- S0004444 // SST2 SGDID:S0004444, Chr XII from 1041363-1039267, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018164 // cdna:Genscan chromosome:SGD1:XII:1039267:1041363:-1 // ensembl // 11 // --- /// GENEFINDER00000024839 // cdna:GeneFinder chromosome:SGD1:XII:1039267:1041138:-1 // ensembl // 11 // --- /// YLR452C // cdna:known chromosome:SGD1:XII:1039267:1041363:-1 gene:YLR452C // ensembl // 11 // --- --- No cerevisiae_gene -2.11028315212521 -4.10832027964464 -1.11519483434752 -2.36874600036313 -1.20154186380596 Max fold change at or above threshold 4 4.10832027964464 Max fold change at or above threshold 1.06885663271578 -1.08453878182395 -0.575767597639446 0.591449746747618 61.2546954154968 34.4645815207962 0.562643913042412 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779409_at SPBC887.01.S1 --- 4.10781770258397 --- --- --- --- 1.45518481731415 5.63525199890137 0.89002913236618 2.50221729278564 0.79931640625 0.334473013877869 0.953857004642487 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC887.01 /DEF=acireductone dioxygenase (predicted) --- --- --- --- --- --- SPBC887.01 // |||acireductone dioxygenase family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.09386828533577 3.87253353103451 4.10781770258397 -1.63498560260098 1.7195185539415 Max fold change at or above threshold 2 4.10781770258397 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771974_at SPAC56F8.14c.S1 --- 4.10716749703419 --- --- --- --- 0.20052033662796 0.259730368852615 0.56123685836792 0.823570609092712 0.92919921875 0.962401986122131 0.932372987270355 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC56F8.14c /DEF=sequence orphan --- --- --- --- --- --- SPAC56F8.14c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.549334115695 1.29528193110164 1.1676966374797 2.79890243456564 4.10716749703419 Max fold change at or above threshold 0 4.10716749703419 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777294_at YML054C-A.S1 Identified by fungal homology and RT-PCR 4.10652836120275 36.3418703079224 11.7706551551819 --- --- --- --- 14.5896062850952 29.9010486602783 42.7826919555664 8.95170402526855 0.00292969006113708 0.000732421991415322 0.000244141003349796 0.0107421996071935 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML054C-A /GEN=CYB2 /DB_XREF=GI:33438851 /SEG=NC_001145:-167623,167781 /DEF=Identified by fungal homology and RT-PCR /NOTE=Yml054c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028573 // YML054C-A SGDID:S0028573, Chr XIII from 167781-167623, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YML054C-A // cdna:known chromosome:SGD1:XIII:167623:167781:-1 gene:YML054C-A // ensembl // 11 // --- --- No cerevisiae_gene 4.10652836120275 2.04947605000317 -1.69422384186739 2.93240894370627 -1.62981330078745 Max fold change at or above threshold 4 4.10652836120275 Max fold change at or above threshold -0.618587773092769 0.381920811461144 1.22365697088309 -0.986990009251466 24.0562627315521 15.3036591705106 0.636161125328848 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1773637_at YLR440C.S1 Protein of unknown function proposed to be involved in protein secretion 4.10523370169942 204.62239074707 665.587188720703 SEC39 45045 // secretory pathway // inferred from mutant phenotype 5635 // nuclear membrane // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay --- 650.732849121094 158.512985229492 250.731796264648 680.441528320313 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR440C /GEN=MRPL4 /DB_XREF=GI:6323473 /SEG=NC_001144:-1015564,1017693 /DEF=Protein required for cell viability /NOTE=Ylr440cp --- --- --- --- --- --- S0004432 // SEC39 SGDID:S0004432, Chr XII from 1017693-1015564, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018155 // cdna:Genscan chromosome:SGD1:XII:1015564:1017693:-1 // ensembl // 11 // --- /// GENEFINDER00000024685 // cdna:GeneFinder chromosome:SGD1:XII:1015564:1017132:-1 // ensembl // 11 // --- /// YLR440C // cdna:known chromosome:SGD1:XII:1015564:1017693:-1 gene:YLR440C // ensembl // 11 // --- --- No cerevisiae_gene -2.23995998933553 -4.10523370169942 -1.05224735929176 -2.59533437248718 1.04565418702828 Max fold change at or above threshold 4 4.10523370169942 Max fold change at or above threshold 0.801408575463265 -1.0279879374819 -0.685245224902517 0.911824586921157 435.104789733887 269.061332744737 0.618382833499251 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773748_at YHL036W.S1 Low affinity methionine permease, similar to Mup1p 4.09992793456037 687.766326904297 2431.05187988281 MUP3 6865 // amino acid transport // inferred from genetic interaction /// 6865 // amino acid transport // inferred from mutant phenotype 16020 // membrane // inferred from sequence similarity 15191 // L-methionine transporter activity // inferred from genetic interaction /// 15191 // L-methionine transporter activity // inferred from sequence similarity /// 15191 // L-methionine transporter activity // inferred from mutant phenotype 2494.91650390625 608.526916503906 767.005737304688 2367.18725585938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL036W /GEN=MUP3 /DB_XREF=GI:6321751 /SEG=NC_001140:+26239,27879 /DEF=methionine uptake /NOTE=Mup3p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 8893857]; go_function: L-methionine transporter activity [goid GO:0015191] [evidence IGI,IMP,ISS] [pmid 8893857]; go_process: amino acid transport [goid GO:0006865] [evidence IGI,IMP] [pmid 8893857] --- --- --- --- --- S0001028 // span:64-86,101-123,144-166,186-208,213-235,255-275,296-318,348-370,391-413,428-445,458-480,493-515 // numtm:12 S0001028 // MUP3 SGDID:S0001028, Chr VIII from 26239-27879, Verified ORF // sgd // 11 // --- /// GENSCAN00000016520 // cdna:Genscan chromosome:SGD1:VIII:26239:27879:1 // ensembl // 11 // --- /// GENEFINDER00000020301 // cdna:GeneFinder chromosome:SGD1:VIII:26239:27879:1 // ensembl // 11 // --- /// YHL036W // cdna:known chromosome:SGD1:VIII:26239:27879:1 gene:YHL036W // ensembl // 11 // --- --- No cerevisiae_gene -3.31069160792038 -4.09992793456037 -1.09679230062855 -3.25280031499316 -1.05395823576302 Max fold change at or above threshold 4 4.09992793456037 Max fold change at or above threshold 0.926326731566483 -0.941550636375029 -0.784627058844329 0.799850963652875 1559.40910339355 1009.910832359 0.647624045647322 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777820_at SPBC19C2.06c.S1 --- 4.09873768520256 --- --- --- --- 1.55027866363525 4.83598375320435 6.35418558120728 3.77015852928162 0.696289002895355 0.24609400331974 0.0561522990465164 0.24609400331974 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C2.06c /DEF=hypothetical protein --- --- --- --- --- --- SPBC19C2.06c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.86340225211232 3.11942869797642 1.33858764690865 4.09873768520256 2.43192312306031 Max fold change at or above threshold 3 4.09873768520256 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1770231_at YKL110C.S1 Protein associated with the RNA polymerase II Elongator complex; involved in sensitivity to G1 arrest induced by Kluyveromyces lactis toxin, zymocin 4.09851335675088 235.083862304688 190.382232666016 KTI12 15976 // carbon utilization // inferred from physical interaction 16591 // DNA-directed RNA polymerase II, holoenzyme // traceable author statement 30234 // enzyme regulator activity // inferred from direct assay 191.543243408203 211.116149902344 259.051574707031 189.221221923828 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL110C /GEN=KTI12 /DB_XREF=GI:6322739 /SEG=NC_001143:-228585,229526 /DEF=Protein involved in resistance to K. lactis killer toxin; RNA polymerase II Elongator associated protein /NOTE=Kti12p; go_component: DNA-directed RNA polymerase II, holoenzyme [goid GO:0016591] [evidence TAS] [pmid 11929532]; go_function: enzyme regulator activity [goid GO:0030234] [evidence IDA] [pmid 11929532]; go_process: carbon utilization [goid GO:0015976] [evidence IPI] [pmid 12139626]; go_process: cell growth and/or maintenance [goid GO:0008151] [evidence IPI] [pmid 12139626] --- --- --- --- --- --- S0001593 // KTI12 SGDID:S0001593, Chr XI from 229526-228585, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018333 // cdna:Genscan chromosome:SGD1:XI:228585:229526:-1 // ensembl // 11 // --- /// YKL110C // cdna:known chromosome:SGD1:XI:228585:229526:-1 gene:YKL110C // ensembl // 11 // --- --- No cerevisiae_gene 4.09851335675088 1.10218531411431 -1.15245279713811 1.35244433631605 -1.01227146437787 Max fold change at or above threshold 4 4.09851335675088 Max fold change at or above threshold -0.653948775875199 -0.0498998570856923 1.42945843513602 -0.725609802175131 212.733047485352 32.4028499767272 0.152316954792642 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774037_at SPBC1105.15c.S1 --- 4.09769259268951 --- --- --- --- 12.7679243087769 9.2965841293335 3.11588144302368 8.58288288116455 0.0561522990465164 0.633789002895355 0.567627012729645 0.366210997104645 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1105.15c /DEF=hypothetical protein --- --- --- --- --- --- SPBC1105.15c // |||3-hydroxyacyl-ACP dehydratase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.36672550715115 -1.37339953375888 -3.49227634032125 -4.09769259268951 -1.48760323140335 Max fold change at or above threshold 4 4.09769259268951 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1769840_at SPAC17G8.11c.S1 --- 4.09753741495981 --- --- --- --- 8.60842132568359 6.51683282852173 4.92294406890869 2.1008768081665 0.0375977009534836 0.398925989866257 0.149657994508743 0.432372987270355 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G8.11c /DEF=mannosyltransferase (predicted) --- --- --- --- --- --- SPAC17G8.11c // |||mannosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.47564677800069 -1.3209516880666 -1.63183244952647 -1.74863277038853 -4.09753741495981 Max fold change at or above threshold 3 4.09753741495981 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1779282_at SPCC965.04c.S1 --- 4.09734502281466 --- --- --- --- 0.321488440036774 0.899947583675385 0.358071267604828 1.31724905967712 0.995849609375 0.904784977436066 0.904784977436066 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC965.04c /DEF=AAA family ATPase --- --- --- --- --- --- SPCC965.04c // |||AAA family ATPase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.48518172385992 2.79931553237946 -1.06915973624248 1.11379204665608 4.09734502281466 Max fold change at or above threshold 0 4.09734502281466 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774471_at SPCC162.10.S1 --- 4.09503431253043 --- --- --- --- 1.46223855018616 1.11119472980499 0.833516180515289 0.376015484333038 0.888427972793579 0.962401986122131 0.962401986122131 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC162.10 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPCC162.10 // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.51268831456636 -1.3159156635334 -4.09503431253043 -1.75430133735638 -3.88877216793298 Max fold change at or above threshold 0 4.09503431253043 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770356_at SPCC63.14.S1 --- 4.09181161110919 --- --- --- --- 2.37193560600281 1.16477739810944 3.44750356674194 0.851918399333954 0.753906011581421 0.84521484375 0.601073980331421 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC63.14 /DEF=sequence orphan --- --- --- --- --- --- SPCC63.14 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -4.09181161110919 -2.0363853298087 2.12036062492694 1.45345580125242 -2.78422863957068 Max fold change at or above threshold 1 4.09181161110919 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775291_at SPCC364.06.S1 --- 4.09013143278336 --- --- --- --- 2.97259569168091 6.9260630607605 12.1583070755005 6.36132192611694 0.149657994508743 0.194580003619194 0.030273400247097 0.0676269978284836 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC364.06 /DEF=involved in nucleosome assembly (predicted) --- --- --- --- --- --- SPCC364.06 // |||nucleosome assembly protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.66617035491744 2.32997143881482 1.71435382022895 4.09013143278336 2.13998894767953 Max fold change at or above threshold 4 4.09013143278336 Max fold change at or above threshold AAAPPA No 4 0 AAPA 3 1 0 No No x = 1
1772515_at SPAC637.07.S1 --- 4.08829424153206 --- --- --- --- 8.12647151947021 13.7016935348511 10.2758483886719 2.06268286705017 0.398925989866257 0.303710997104645 0.111571997404099 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC637.07 /GEN=moe1 /DEF=translation initiation factor --- --- --- --- --- --- SPAC637.07 // |moe1||eukaryotic translation initiation factor eIF3 gamma subunit Moe1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.08829424153206 1.68605691929433 -2.72591339781283 1.26449078964369 -3.93975809334754 Max fold change at or above threshold 3 4.08829424153206 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779500_at SPBC14C8.15.S1 --- 4.08566834512713 --- --- --- --- 10.5041923522949 6.56880617141724 10.6127157211304 2.57098507881165 0.194580003619194 0.303710997104645 0.171387001872063 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14C8.15 /DEF=triglyceride lipase-cholesterol esterase (predicted) --- --- --- --- --- --- SPBC14C8.15 // |||triglyceride lipase-cholesterol esterase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.58529577261667 -1.59910219272441 1.05608589956969 1.01033143388808 -4.08566834512713 Max fold change at or above threshold 4 4.08566834512713 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780104_at YDR093W.S1 Non-essential P-type ATPase that is a potential aminophospholipid translocase, localizes to the plasma membrane and late exocytic or early endocytic membranes, likely involved in protein transport; potential Cdc28p substrate 4.08563204222241 258.382667541504 952.73681640625 DNF2 6886 // intracellular protein transport // inferred from genetic interaction /// 6897 // endocytosis // inferred from mutant phenotype /// 45332 // phospholipid translocation // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay 4012 // phospholipid-translocating ATPase activity // inferred from sequence similarity 956.116760253906 234.019302368164 282.746032714844 949.356872558594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR093W /GEN=DNF2 /DB_XREF=GI:6320298 /SEG=NC_001136:+631276,636114 /DEF=Non-essential P-type ATPase that is a potential aminophospholipid translocase, localizes to the plasma membrane and late exocytic or early endocytic membranes, likely involved in protein transport; potential Cdc28p substrate /NOTE=Dnf2p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12221123]; go_function: phospholipid-translocating ATPase activity [goid GO:0004012] [evidence ISS] [pmid 12221123]; go_process: intracellular protein transport [goid GO:0006886] [evidence IGI] [pmid 12221123] --- --- --- ec // A8B1_HUMAN // (O43520) Potential phospholipid-transporting ATPase IC (EC 3.6.3.1) (Familial intrahepatic cholestasis type 1) (ATPase class I type 8B member 1) // 0.0 scop // a.4.5.CAP C-terminal domain-like // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; CAP C-terminal domain-like // 3.29999995231628 /// scop // a.4.5.SCF ubiquitin ligase complex WHB domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; SCF ubiquitin ligase complex WHB domain // 5.40000009536743 S0002500 // span:259-293,598-620,644-666,1234-1251,1261-1283,1313-1335,1350-1372,1379-1400,1415-1437 // numtm:9 S0002500 // DNF2 SGDID:S0002500, Chr IV from 631277-636115, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023682 // cdna:GeneFinder chromosome:SGD1:IV:631277:636115:1 // ensembl // 11 // --- /// GENSCAN00000025165 // cdna:Genscan chromosome:SGD1:IV:631277:636115:1 // ensembl // 11 // --- /// YDR093W // cdna:known chromosome:SGD1:IV:631277:636115:1 gene:YDR093W // ensembl // 11 // --- YDR094W // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene -1.55026990897209 -4.08563204222241 -1.01489927532448 -3.38153908323153 -1.007120491662 Max fold change at or above threshold 4 4.08563204222241 Max fold change at or above threshold 0.873361347581447 -0.925638461346801 -0.804242966007382 0.856520079772736 605.559741973877 401.388290483438 0.662838466069552 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770994_at SPBC19C7.07c.S1 --- 4.08544320957577 --- --- --- --- 0.762838244438171 3.11653232574463 2.83126997947693 0.877040863037109 0.904784977436066 0.633789002895355 0.665526986122131 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C7.07c /DEF=tRNA-splicing endonuclease (subunit) (predicted) --- --- --- --- --- --- SPBC19C7.07c // |||tRNA-splicing endonuclease |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.62299732176253 4.08544320957577 1.20616836514719 3.71149454044763 1.14970751588765 Max fold change at or above threshold 2 4.08544320957577 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777484_at SPCC1620.04c.S1 --- 4.08540180212967 --- --- --- --- 9.04620552062988 5.31718254089355 9.29761791229248 2.214275598526 0.432372987270355 0.366210997104645 0.0461426004767418 0.432372987270355 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1620.04c /DEF=WD repeat protein --- --- --- --- --- --- SPCC1620.04c // |||WD repeat protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -2.06732242647548 -1.70131558415703 -2.45718960335036 1.02779202739638 -4.08540180212967 Max fold change at or above threshold 3 4.08540180212967 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1770640_at YCR014C.S1 DNA polymerase IV, undergoes pair-wise interactions with Dnl4p-Lif1p and Rad27p to mediate repair of DNA double-strand breaks by non-homologous end joining (NHEJ); homologous to mammalian DNA polymerase beta 4.08518379819635 23.8633918762207 100.092437744141 POL4 6287 // base-excision repair, gap-filling // traceable author statement /// 6302 // double-strand break repair // inferred from direct assay /// 6303 // double-strand break repair via nonhomologous end-joining // inferred from direct assay 5634 // nucleus // traceable author statement 3890 // beta DNA polymerase activity // traceable author statement 97.1468734741211 23.780294418335 23.9464893341064 103.03800201416 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR014C /GEN=POL4 /DB_XREF=GI:10383782 /SEG=NC_001135:-139182,140930 /DEF=Probable homolog of mammalian DNA polymerase beta; may function in double-stranded DNA break repair /NOTE=Pol4p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 9745046]; go_function: beta DNA polymerase activity [goid GO:0003890] [evidence TAS] [pmid 9745046]; go_process: base-excision repair, gap-filling [goid GO:0006287] [evidence TAS] [pmid 9745046]; go_process: double-strand break repair [goid GO:0006302] [evidence IDA] [pmid 12235149] --- --- --- --- --- --- S0000607 // POL4 SGDID:S0000607, Chr III from 140930-139182, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022471 // cdna:Genscan chromosome:SGD1:III:139182:140930:-1 // ensembl // 11 // --- /// GENEFINDER00000023348 // cdna:GeneFinder chromosome:SGD1:III:139182:140930:-1 // ensembl // 11 // --- /// YCR014C // cdna:known chromosome:SGD1:III:139182:140930:-1 gene:YCR014C // ensembl // 11 // --- --- No cerevisiae_gene -3.00961271421498 -4.08518379819635 1.23312983699743 -4.05683155132711 1.06064146306889 Max fold change at or above threshold 4 4.08518379819635 Max fold change at or above threshold 0.797905849126147 -0.866619481816043 -0.862848886938434 0.931562519628329 61.9779148101807 44.0765770829439 0.711165859934735 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778070_at SPCC23B6.01c.S1 --- 4.08452454234775 --- --- --- --- 2.26616358757019 9.25620079040527 2.03989458084106 5.41273355484009 0.5 0.219482004642487 0.665526986122131 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC23B6.01c /DEF=oxysterol binding protein (predicted) --- --- --- --- --- --- SPCC23B6.01c // |||oxysterol binding protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.33007822285192 4.08452454234775 -2.46202795916729 -1.11092191177636 2.3885008057356 Max fold change at or above threshold 2 4.08452454234775 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771240_at YDR109C.S1 Hypothetical protein 4.08416967304316 146.527645111084 538.012390136719 --- --- --- 16301 // kinase activity // inferred from sequence similarity 512.967529296875 125.598976135254 167.456314086914 563.057250976563 0.000244141003349796 0.00805663969367743 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR109C /GEN=GSG1 /DB_XREF=GI:6320314 /SEG=NC_001136:-673514,675661 /DEF=Hypothetical ORF /NOTE=Ydr109cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: kinase activity [goid GO:0016301] [evidence ISS] [pmid 10592175]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002516 // YDR109C SGDID:S0002516, Chr IV from 675662-673515, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023601 // cdna:GeneFinder chromosome:SGD1:IV:673515:675635:-1 // ensembl // 11 // --- /// GENSCAN00000025177 // cdna:Genscan chromosome:SGD1:IV:673515:675662:-1 // ensembl // 11 // --- /// YDR109C // cdna:known chromosome:SGD1:IV:673515:675662:-1 gene:YDR109C // ensembl // 11 // --- --- No cerevisiae_gene -2.11174075152649 -4.08416967304316 -1.03083795645721 -3.06329165367053 1.09764696363597 Max fold change at or above threshold 4 4.08416967304316 Max fold change at or above threshold 0.750023975986299 -0.95202603966334 -0.768110019288937 0.970112082965978 342.270017623901 227.589406656637 0.664941113558829 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1780182_at SPBC17F3.02.S1 --- 4.08279281241371 --- --- --- --- 14.95481300354 14.4735670089722 7.95760774612427 3.66288805007935 0.0461426004767418 0.0952147990465164 0.334473013877869 0.219482004642487 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17F3.02 /GEN=nak1 /DEF=N-terminal protein kinase --- --- --- --- --- --- SPBC17F3.02 // |nak1||PAK-related kinase Nak1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.40978836517505 -1.03324999250493 -1.06842334622969 -1.87931014956395 -4.08279281241371 Max fold change at or above threshold 4 4.08279281241371 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1779764_at YGL249W.S1 Required for 'ZIPpering' up meiotic chromosomes during chromosome synapsis; involved in meiotic recombination and disjunction 4.08256204585087 12.4218430519104 51.3521747589111 ZIP2 7129 // synapsis // inferred from genetic interaction /// 7129 // synapsis // inferred from mutant phenotype /// 7130 // synaptonemal complex formation // inferred from mutant phenotype 795 // synaptonemal complex // inferred from direct assay --- 41.1371536254883 14.7673778533936 10.0763082504272 61.567195892334 0.000244141003349796 0.00292969006113708 0.014160200022161 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL249W /GEN=ZIP2 /DB_XREF=GI:6321188 /SEG=NC_001139:+33098,35212 /DEF=Required for 'ZIPpering' up meiotic chromosomes during chromosome synapsis /NOTE=Zip2p; go_component: synaptonemal complex [goid GO:0000795] [evidence IDA] [pmid 9590170]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: synaptonemal complex formation [goid GO:0007130] [evidence IMP] [pmid 9590170] --- --- --- --- --- --- S0003218 // ZIP2 SGDID:S0003218, Chr VII from 33098-35212, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021709 // cdna:GeneFinder chromosome:SGD1:VII:33515:35212:1 // ensembl // 11 // --- /// YGL249W // cdna:known chromosome:SGD1:VII:33098:35212:1 gene:YGL249W // ensembl // 11 // --- --- No cerevisiae_gene -1.18102748115413 -2.78567759516189 -1.2128750905535 -4.08256204585087 1.49663237405389 Max fold change at or above threshold 4 4.08256204585087 Max fold change at or above threshold 0.384614796051569 -0.711822744919664 -0.906874263918329 1.23408221278642 31.8870089054108 24.050413075729 0.754238603786008 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1769750_at YDR253C.S1 Zinc-finger DNA-binding protein, involved in regulating expression of the methionine biosynthetic genes, similar to Met31p 4.08072582531349 217.643760681152 879.169189453125 MET32 96 // sulfur amino acid metabolism // inferred from direct assay 5634 // nucleus // inferred from physical interaction 3677 // DNA binding // traceable author statement /// 3704 // specific RNA polymerase II transcription factor activity // inferred from direct assay 867.897705078125 222.605331420898 212.682189941406 890.440673828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR253C /GEN=MET32 /DB_XREF=GI:6320459 /SEG=NC_001136:-963982,964557 /DEF=Zinc-finger DNA-binding protein, involved in regulating expression of the methionine biosynthetic genes, similar to Met31p /NOTE=Met32p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 9799240]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 10747029]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IDA] [pmid 9199298]; go_process: sulfur amino acid metabolism [goid GO:0000096] [evidence IDA] [pmid 9199298] --- --- --- --- --- --- S0002661 // MET32 SGDID:S0002661, Chr IV from 964559-963984, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025293 // cdna:Genscan chromosome:SGD1:IV:963984:964559:-1 // ensembl // 11 // --- /// YDR253C // cdna:known chromosome:SGD1:IV:963984:964559:-1 gene:YDR253C // ensembl // 11 // --- --- No cerevisiae_gene -4.04738061309139 -3.8988181439245 -1.17221528062126 -4.08072582531349 1.02597422325016 Max fold change at or above threshold 4 4.08072582531349 Max fold change at or above threshold 0.836223879843521 -0.852739201598576 -0.878711644935852 0.895226966690907 548.406475067139 382.064226712554 0.696680736064941 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777774_at YBL106C.S1 Protein with roles in exocytosis and cation homeostasis; functions in docking and fusion of post-Golgi vesicles with plasma membrane; homolog of Sro7p and Drosophila lethal giant larvae tumor suppressor; interacts with SNARE protein Sec9p 4.08025557646789 63.7501659393311 121.058574676514 SRO77 6887 // exocytosis // inferred from genetic interaction /// 6893 // Golgi to plasma membrane transport // inferred from genetic interaction /// 6893 // Golgi to plasma membrane transport // inferred from physical interaction 5886 // plasma membrane // inferred from physical interaction /// 5886 // plasma membrane // inferred from sequence similarity --- 132.004791259766 53.9505424499512 73.5497894287109 110.112358093262 0.018554700538516 0.0676269978284836 0.0239257998764515 0.00122069998178631 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL106C /GEN=SRO77 /DB_XREF=GI:6319362 /SEG=NC_001134:-10847,13879 /DEF=Suppressor of defect in the small GTPase Rho3p /NOTE=Sro77p; go_component: plasma membrane [goid GO:0005886] [evidence IPI,ISS] [pmid 10402465]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi to plasma membrane transport [goid GO:0006893] [evidence IGI,IPI] [pmid 10402465]; go_process: exocytosis [goid GO:0006887] [evidence IGI] [pmid 10402465] --- --- --- --- --- --- S0000202 // SRO77 SGDID:S0000202, Chr II from 13879-10847, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021054 // cdna:Genscan chromosome:SGD1:II:10847:12880:-1 // ensembl // 11 // --- /// GENEFINDER00000022369 // cdna:GeneFinder chromosome:SGD1:II:10847:12829:-1 // ensembl // 11 // --- /// YBL106C // cdna:known chromosome:SGD1:II:10847:13879:-1 gene:YBL106C // ensembl // 11 // --- --- No cerevisiae_gene -4.08025557646789 -2.44677412432366 -1.783206899274 -1.79476776595959 -1.19881903853119 Max fold change at or above threshold 4 4.08025557646789 Max fold change at or above threshold 1.12518780316782 -1.09260904432103 -0.535725225368907 0.503146466522122 92.4043703079224 35.1944989452903 0.380874831222922 PPAPPP Called_P_>2EXP 3 0 PAPP 1 3 0 Yes Yes 2 < x = 3
1773998_at YGR045C.S1 Hypothetical protein 4.0800006402225 69.0144901275635 17.6575636863709 --- --- --- --- 20.4968719482422 83.6272506713867 54.4017295837402 14.8182554244995 0.00195312988944352 0.00195312988944352 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR045C /GEN=RME1 /DB_XREF=GI:6321482 /SEG=NC_001139:-583936,584298 /DEF=Hypothetical ORF /NOTE=Ygr045cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003277 // span:28-46,61-83,95-114 // numtm:3 S0003277 // YGR045C SGDID:S0003277, Chr VII from 584300-583938, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YGR045C // cdna:known chromosome:SGD1:VII:583938:584300:-1 gene:YGR045C // ensembl // 11 // --- --- No cerevisiae_gene 3.08130714078865 4.0800006402225 -2.03741211790574 2.65414789735298 -1.38321761645126 Max fold change at or above threshold 4 4.0800006402225 Max fold change at or above threshold -0.712712455498526 1.25731696623959 0.345313306942939 -0.889917817684005 43.3360269069672 32.0453989298525 0.739463241488354 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770557_at SPAC1250.01.S1 --- 4.07729250126043 --- --- --- --- 14.0579376220703 12.4766407012939 9.50908279418945 9.01053810119629 0.171387001872063 0.030273400247097 0.0805663987994194 0.0078125 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1250.01 /GEN=snf21 /DEF=chromatin remodeling complex (predicted) --- --- --- --- --- --- SPAC1250.01 // |snf21|SPAC29A4.21|bromodomain protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.07729250126043 -1.12674059938364 -1.18844089942098 -1.47836946278988 -1.56016627022574 Max fold change at or above threshold 4 4.07729250126043 Max fold change at or above threshold AAPAAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1775353_at SPAC4F10.09c.S1 --- 4.07727031691006 --- --- --- --- 3.83913207054138 4.26708126068115 5.83425426483154 3.57973027229309 0.358154296875 0.466064006090164 0.111571997404099 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F10.09c /DEF=involved in ribosome biogenesis and assembly (predicted) --- --- --- --- --- --- SPAC4F10.09c // |||ribosome biogenesis and assembly protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.07727031691006 1.11147029648277 -3.51563994359689 1.51968053133656 -1.0724640625178 Max fold change at or above threshold 4 4.07727031691006 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774598_at SPBC146.04.S1 --- 4.07574139134929 --- --- --- --- 2.16819047927856 8.8369836807251 4.80219173431396 5.49799013137817 0.601073980331421 0.303710997104645 0.398925989866257 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC146.04 /DEF=Erv1Alr family --- --- --- --- --- --- SPBC146.04 // |||Erv1/Alr family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.60954059054452 4.07574139134929 -1.42045359141691 2.21483849330056 2.53575051819596 Max fold change at or above threshold 3 4.07574139134929 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777631_at YPR095C.S1 Guanine nucleotide exchange factor (GEF) for Arf proteins; involved in vesicular transport; suppressor of ypt3 mutations; member of the Sec7-domain family 4.07570004575311 114.970207214355 417.593658447266 SYT1 16192 // vesicle-mediated transport // inferred from genetic interaction /// 45045 // secretory pathway // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay 5086 // ARF guanyl-nucleotide exchange factor activity // inferred from direct assay 388.883514404297 95.4151458740234 134.525268554688 446.303802490234 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR095C /GEN=SYT1 /DB_XREF=GI:6325352 /SEG=NC_001148:-721033,724713 /DEF=Suppressor of Ypt3 /NOTE=Syt1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: ARF guanyl-nucleotide exchange factor activity [goid GO:0005086] [evidence IDA] [pmid 10430582]; go_process: secretory pathway [goid GO:0045045] [evidence IGI] [pmid 10430582] --- --- --- --- --- --- S0006299 // SYT1 SGDID:S0006299, Chr XVI from 724715-721035, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017255 // cdna:Genscan chromosome:SGD1:XVI:721035:724715:-1 // ensembl // 11 // --- /// GENEFINDER00000021030 // cdna:GeneFinder chromosome:SGD1:XVI:721035:722819:-1 // ensembl // 11 // --- /// YPR095C // cdna:known chromosome:SGD1:XVI:721035:724715:-1 gene:YPR095C // ensembl // 11 // --- --- No cerevisiae_gene -2.26669069208594 -4.07570004575311 -1.11179528065231 -2.89078415216995 1.14765420996026 Max fold change at or above threshold 4 4.07570004575311 Max fold change at or above threshold 0.692637408839459 -0.965311597579479 -0.744359031672395 1.01703322041242 266.281932830811 177.006872584185 0.664734819604345 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777118_at SPCC10H11.02.S1 --- 4.0752367870601 --- --- --- --- 1.99531662464142 5.76877403259277 1.84056663513184 4.21996688842773 0.5 0.432372987270355 0.696289002895355 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC10H11.02 /GEN=cwf23 /DEF=DNAJ domain protein --- --- --- --- --- --- SPCC10H11.02 // |cwf23|SPCP31B10.01|DNAJ domain protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.29272241506103 2.89115720349871 4.0752367870601 -1.08407736321836 2.11493596370256 Max fold change at or above threshold 2 4.0752367870601 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777950_at SPBC13E7.09.S1 --- 4.0751857127159 --- --- --- --- 7.17513036727905 1.76068794727325 7.95411109924316 3.82508254051209 0.567627012729645 0.828612983226776 0.780517995357513 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13E7.09 /DEF=verprolin --- --- --- --- --- --- SPBC13E7.09 // |||verprolin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.0004470557884 -4.0751857127159 -3.07922770362564 1.10856677051006 -1.87581059788542 Max fold change at or above threshold 3 4.0751857127159 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779756_at YJL084C.S1 Cytoplasmic protein of unknown function that interacts with Pcl7p, phosphorylated in vitro; potential Cdc28p substrate 4.0750560873271 387.097991943359 1035.25619506836 --- --- 5737 // cytoplasm // inferred from direct assay 30332 // cyclin binding // inferred from direct assay 972.772521972656 341.901702880859 432.294281005859 1097.73986816406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL084C /GEN=EXO70 /DB_XREF=GI:6322377 /SEG=NC_001142:-274778,277918 /DEF=Cytoplasmic protein of unknown function that interacts with Pcl7p, phosphorylated in vitro; potential Cdc28p substrate /NOTE=Yjl084cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: cyclin binding [goid GO:0030332] [evidence IDA] [pmid 12098764]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003620 // YJL084C SGDID:S0003620, Chr X from 277918-274778, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024073 // cdna:Genscan chromosome:SGD1:X:274778:277918:-1 // ensembl // 11 // --- /// GENEFINDER00000024394 // cdna:GeneFinder chromosome:SGD1:X:274778:277918:-1 // ensembl // 11 // --- /// YJL084C // cdna:known chromosome:SGD1:X:274778:277918:-1 gene:YJL084C // ensembl // 11 // --- --- No cerevisiae_gene -4.0750560873271 -2.84518185717148 1.1397978592544 -2.25025535778363 1.12846512763127 Max fold change at or above threshold 4 4.0750560873271 Max fold change at or above threshold 0.689362181667457 -0.973122850079404 -0.734918286536333 1.01867895494828 711.177093505859 379.474585962983 0.533586626211909 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775415_at YML002W.S1 Hypothetical protein 4.07415405863075 1027.0927734375 1439.23089599609 --- --- --- --- 1405.46801757813 1254.91027832031 799.275268554688 1472.99377441406 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML002W /GEN=GLO1 /DB_XREF=GI:6323641 /SEG=NC_001145:+264541,266754 /DEF=Hypothetical ORF /NOTE=Yml002wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004461 // YML002W SGDID:S0004461, Chr XIII from 264541-266754, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018717 // cdna:Genscan chromosome:SGD1:XIII:264541:266754:1 // ensembl // 11 // --- /// GENEFINDER00000021975 // cdna:GeneFinder chromosome:SGD1:XIII:264541:266754:1 // ensembl // 10 // --- /// YML002W // cdna:known chromosome:SGD1:XIII:264541:266754:1 gene:YML002W // ensembl // 11 // --- --- No cerevisiae_gene -4.07415405863075 -1.11997490327303 1.05047650629334 -1.75842800706145 1.0480450326805 Max fold change at or above threshold 4 4.07415405863075 Max fold change at or above threshold 0.568139112433446 0.0717103776575124 -1.43063890397088 0.790789413879922 1233.1618347168 303.281677128879 0.245938260973288 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773625_at SPBC1711.05.S1 --- 4.07369711839829 --- --- --- --- 1.10776126384735 4.5126838684082 2.64640855789185 3.36811518669128 0.601073980331421 0.466064006090164 0.533936023712158 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1711.05 /DEF=chaperone activity (predicted) --- --- --- --- --- --- SPBC1711.05 // |||chaperone activity |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.24763339248216 4.07369711839829 -2.70480707357009 2.38897011861621 3.04047026792896 Max fold change at or above threshold 3 4.07369711839829 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777588_at SPBC947.12.S1 --- 4.07306162883795 --- --- --- --- 3.43288993835449 9.02932453155518 13.9823722839355 7.37416362762451 0.633789002895355 0.219482004642487 0.0375977009534836 0.219482004642487 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC947.12 /GEN=kms2 /DEF=coiled-coil (predicted) --- --- --- --- --- --- SPBC947.12 // |kms2||coiled-coil |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.83983675061381 2.63024002915842 -1.89975999317602 4.07306162883795 2.14809206238613 Max fold change at or above threshold 4 4.07306162883795 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1774419_at SPAC3A11.02.S1 --- 4.06867368473322 --- --- --- --- 3.90705990791321 1.66568982601166 2.20675110816956 4.72993946075439 0.24609400331974 0.5 0.432372987270355 0.2392578125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A11.02 /GEN=scp3 /DEF=zinc finger protein --- --- --- --- --- --- SPAC3A11.02 // |scp3||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -4.06867368473322 -2.34561071749373 1.62574690782191 -1.77050320421228 1.21061349767751 Max fold change at or above threshold 2 4.06867368473322 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770783_at YLR139C.S1 Mitochondrial membrane protein required for assembly of respiratory-chain enzyme complexes III and IV; coordinates expression of mitochondrially-encoded genes; may facilitate delivery of mRNA to membrane-bound translation machinery 4.06846224309215 77.4912757873535 319.241592407227 SLS1 6412 // protein biosynthesis // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay /// 16021 // integral to membrane // inferred from direct assay /// 42645 // mitochondrial nucleoid // inferred from direct assay --- 284.266510009766 69.8707504272461 85.1118011474609 354.216674804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR139C /GEN=SLS1 /DB_XREF=GI:6323168 /SEG=NC_001144:-421543,423474 /DEF=Protein involved in mitochondrial gene expression, may facilitate translation by delivering mRNAs to membrane-bound translational activation complexes /NOTE=Sls1p; go_component: integral to membrane [goid GO:0016021] [evidence IDA] [pmid 8917313]; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 8917313]; go_component: mitochondrial nucleoid [goid GO:0042645] [evidence IDA] [pmid 12637560]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 8917313]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP] [pmid 12637560] --- --- --- --- --- --- S0004129 // SLS1 SGDID:S0004129, Chr XII from 423474-421543, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017928 // cdna:Genscan chromosome:SGD1:XII:421543:423474:-1 // ensembl // 11 // --- /// GENEFINDER00000024776 // cdna:GeneFinder chromosome:SGD1:XII:421543:423474:-1 // ensembl // 11 // --- /// YLR139C // cdna:known chromosome:SGD1:XII:421543:423474:-1 gene:YLR139C // ensembl // 11 // --- --- No cerevisiae_gene -1.11222076331614 -4.06846224309215 1.22303301879956 -3.33991886174819 1.24607247893014 Max fold change at or above threshold 4 4.06846224309215 Max fold change at or above threshold 0.602376958338102 -0.901079984697599 -0.794201641725303 1.0929046680848 198.36643409729 142.601862045762 0.718881007740562 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770702_at SPAP8A3.02c.S1 --- 4.06739611008115 --- --- --- --- 3.81687760353088 10.2625494003296 5.91799545288086 3.61423349380493 0.601073980331421 0.398925989866257 0.432372987270355 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP8A3.02c /DEF=conserved protein --- --- --- --- --- --- SPAP8A3.02c // |||conserved protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.12820011744902 2.68872897334617 -4.06739611008115 1.55048080331585 -1.05606835033578 Max fold change at or above threshold 4 4.06739611008115 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773814_at SPBC12C2.08.S1 --- 4.06588182539697 --- --- --- --- 2.03209924697876 1.354128241539 1.88921892642975 0.499792993068695 0.60107421875 0.870360970497131 0.601073980331421 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12C2.08 /DEF=dynamin family --- --- --- --- --- --- SPBC12C2.08 // |dnm1||dynamin family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.8651608155676 -1.50066971845239 -2.39702246684238 -1.07562930825546 -4.06588182539697 Max fold change at or above threshold 0 4.06588182539697 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774647_at SPAC12G12.06c.S1 --- 4.06508773932036 --- --- --- --- 0.757291913032532 1.47250092029572 3.078458070755 0.988448023796082 0.805419981479645 0.725830018520355 0.432372987270355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12G12.06c /DEF=RNA 3-terminal phosphate cyclase (predicted) --- --- --- --- --- --- SPAC12G12.06c // |||RNA 3'-terminal phosphate cyclase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.94027618504162 1.94442974360992 2.27930217823341 4.06508773932036 1.30524043210484 Max fold change at or above threshold 1 4.06508773932036 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771242_at SPAC2H10.01.S1 --- 4.06419845337787 --- --- --- --- 1.15757608413696 1.48148846626282 1.13994336128235 4.70461893081665 0.633789002895355 0.665526986122131 0.633789002895355 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2H10.01 /DEF=involved in transcriptional regulation --- --- --- --- --- --- SPAC2H10.01 // |||transcription factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.88221014295409 1.27981951818515 1.50087462457978 -1.01546806925107 4.06419845337787 Max fold change at or above threshold 1 4.06419845337787 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775074_at YMR288W.S1 U2-snRNP associated splicing factor that forms extensive associations with the branch site-3' splice site-3' exon region upon prespliceosome formation; similarity to the mammalian U2 snRNP-associated splicing factor SAP155 4.06272240972235 137.791618347168 495.44856262207 HSH155 245 // spliceosome assembly // inferred from physical interaction /// 245 // spliceosome assembly // inferred from sequence similarity 5686 // snRNP U2 // inferred from direct assay 3729 // mRNA binding // inferred from direct assay 448.511138916016 110.396697998047 165.186538696289 542.385986328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR288W /GEN=HSH155 /DB_XREF=GI:6323944 /SEG=NC_001145:+845570,848485 /DEF=U2-snRNP associated splicing factor that forms extensive associations with the branch site-3' splice site-3' exon region upon prespliceosome formation; ortholog of the mammalian U2 snRNP-associated splicing factor SAP155 /NOTE=Hsh155p; go_component: snRNP U2 [goid GO:0005686] [evidence IDA] [pmid 11804584]; go_function: mRNA binding [goid GO:0003729] [evidence IDA] [pmid 12773561]; go_process: spliceosome assembly [goid GO:0000245] [evidence IPI,ISS] [pmid 10688664] --- --- --- --- --- --- S0004901 // HSH155 SGDID:S0004901, Chr XIII from 845570-848485, Verified ORF // sgd // 11 // --- /// GENSCAN00000018956 // cdna:Genscan chromosome:SGD1:XIII:845570:848485:1 // ensembl // 11 // --- /// GENEFINDER00000021827 // cdna:GeneFinder chromosome:SGD1:XIII:845570:848485:1 // ensembl // 11 // --- /// YMR288W // cdna:known chromosome:SGD1:XIII:845570:848485:1 gene:YMR288W // ensembl // 11 // --- --- No cerevisiae_gene -2.73952136521125 -4.06272240972235 1.09527664262994 -2.71517971413303 1.20930326867464 Max fold change at or above threshold 4 4.06272240972235 Max fold change at or above threshold 0.624462252971698 -0.976402309476038 -0.716989803704797 1.06892986020914 316.620090484619 211.207399332389 0.667068849008016 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779089_at SPAC16E8.14c.S1 --- 4.06234012268811 --- --- --- --- 2.65593338012695 2.22475385665894 10.5777912139893 6.03454494476318 0.601073980331421 0.398925989866257 0.0676269978284836 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16E8.14c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC16E8.14c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.7611991319048 -1.19380999034003 4.06234012268811 3.98270201095317 2.27209951496401 Max fold change at or above threshold 3 4.06234012268811 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772612_at YGR188C.S1 Protein kinase that forms a complex with Mad1p and Bub3p that is crucial in the checkpoint mechanism required to prevent cell cycle progression into anaphase in the presence of spindle damage, associates with centromere DNA via Skp1p 4.05984803588931 26.863109588623 103.06844329834 BUB1 6468 // protein amino acid phosphorylation // inferred from direct assay /// 7094 // mitotic spindle checkpoint // traceable author statement 776 // kinetochore // inferred from direct assay /// 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 5634 // nucleus // inferred from direct assay 4672 // protein kinase activity // inferred from direct assay /// 5515 // protein binding // inferred from physical interaction 99.9978790283203 29.0952777862549 24.6309413909912 106.139007568359 0.000244141003349796 0.00805663969367743 0.0239257998764515 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR188C /GEN=BUB1 /DB_XREF=GI:6321627 /SEG=NC_001139:-872047,875112 /DEF=checkpoint gene involved in permitting entry into mitosis depending upon the assembly state of microtubules /NOTE=Bub1p; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IDA] [pmid 12221113]; go_component: kinetochore [goid GO:0000776] [evidence IDA] [pmid 12769845]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 7969164]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12769845]; go_function: protein kinase activity [goid GO:0004672] [evidence IDA] [pmid 7969164]; go_process: mitotic spindle checkpoint [goid GO:0007094] [evidence TAS] [pmid 9448456]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 7969164] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-24 /// hanks // 2.1.14 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; MLCK-K // 5.0E-34 --- --- S0003420 // BUB1 SGDID:S0003420, Chr VII from 875114-872049, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019487 // cdna:Genscan chromosome:SGD1:VII:872049:875114:-1 // ensembl // 11 // --- /// GENEFINDER00000021756 // cdna:GeneFinder chromosome:SGD1:VII:872049:874823:-1 // ensembl // 11 // --- /// YGR188C // cdna:known chromosome:SGD1:VII:872049:875114:-1 gene:YGR188C // ensembl // 11 // --- --- No cerevisiae_gene -3.91313107805731 -3.43691095726747 -1.14832954161254 -4.05984803588931 1.06141258794399 Max fold change at or above threshold 4 4.05984803588931 Max fold change at or above threshold 0.794266796709685 -0.813275366383078 -0.914493218195236 0.933501787868629 64.9657764434814 44.1062156065974 0.678914622762474 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1771517_at SPBC4F6.05c.S1 --- 4.0586935384753 --- --- --- --- 10.0399265289307 11.8958148956299 2.47368431091309 3.73770833015442 0.0239257998764515 0.0461426004767418 0.5 0.165771484375 P P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4F6.05c /DEF=legume-like lectin family --- --- --- --- --- --- SPBC4F6.05c // |||legume-like lectin family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- AB011009 // gb // 8 // Cross Hyb Matching Probes No No -2.17166454677063 1.18485079162197 1.23288460285348 -4.0586935384753 -2.68611824200736 Max fold change at or above threshold 3 4.0586935384753 Max fold change at or above threshold PAPAAA No 4 0 PPAA 2 2 0 No No 1 < x = 2
1773606_at SPBC30B4.06c.S1 --- 4.05845653800076 --- --- --- --- 1.07945716381073 0.447190195322037 0.580190896987915 0.265977263450623 0.773681640625 0.79931640625 0.888427972793579 0.74609375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30B4.06c /DEF=GIDA family --- --- --- --- --- --- SPBC30B4.06c // |||GIDA family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.77462652991786 -2.41386590113716 -3.85453786981084 -1.86052068278695 -4.05845653800076 Max fold change at or above threshold 0 4.05845653800076 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774186_at YHR066W.S1 Constituent of 66S pre-ribosomal particles, required for ribosomal large subunit maturation; functionally redundant with Ssf2p; member of the Brix family 4.05826929298889 58.514669418335 149.953590393066 SSF1 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 27 // ribosomal large subunit assembly and maintenance // inferred from physical interaction /// 747 // conjugation with cellular fusion // inferred from genetic interaction 5730 // nucleolus // inferred from direct assay 19843 // rRNA binding // inferred from physical interaction 146.560501098633 80.9152984619141 36.1140403747559 153.3466796875 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR066W /GEN=SSF1 /DB_XREF=GI:6321857 /SEG=NC_001140:+229336,230697 /DEF=putative involvement in mating /NOTE=Ssf1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 9611192]; go_function: rRNA binding [goid GO:0019843] [evidence IPI] [pmid 11864606]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IGI] [pmid 7748491]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 11864606]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IPI] [pmid 11864607] --- --- --- --- --- --- S0001108 // SSF1 SGDID:S0001108, Chr VIII from 229336-230697, Verified ORF // sgd // 11 // --- /// GENSCAN00000016611 // cdna:Genscan chromosome:SGD1:VIII:229336:230697:1 // ensembl // 11 // --- /// GENEFINDER00000020257 // cdna:GeneFinder chromosome:SGD1:VIII:229336:230697:1 // ensembl // 11 // --- /// YHR066W // cdna:known chromosome:SGD1:VIII:229336:230697:1 gene:YHR066W // ensembl // 11 // --- --- No cerevisiae_gene 1.4311785260764 -1.81128295742019 -1.52109831500755 -4.05826929298889 1.04630291611995 Max fold change at or above threshold 4 4.05826929298889 Max fold change at or above threshold 0.756645675211633 -0.416858154045497 -1.21774604545418 0.877958524288039 104.234129905701 55.9394873711444 0.536671505021936 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778307_at SPBC26H8.04c.S1 --- 4.05451947745585 --- --- --- --- 2.26404309272766 3.37841510772705 0.558399856090546 5.44077205657959 0.5 0.533936023712158 0.567627012729645 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC26H8.04c /DEF=DEP domain --- --- --- --- --- --- SPBC26H8.04c // |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.80436727346059 1.49220441897898 -1.66551742432912 -4.05451947745585 2.40312212875095 Max fold change at or above threshold 2 4.05451947745585 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773855_at YLR132C.S1 Protein required for cell viability 4.05102092240712 115.003070831299 115.41072845459 --- 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction /// 9060 // aerobic respiration // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 106.710861206055 91.1116561889648 138.894485473633 124.110595703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR132C /GEN=ACE2 /DB_XREF=GI:6323161 /SEG=NC_001144:-407284,408156 /DEF=Protein required for cell viability /NOTE=Ylr132cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14690591]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: aerobic respiration [goid GO:0009060] [evidence IPI] [pmid 14690591]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 14690591] --- --- --- --- --- --- S0004122 // YLR132C SGDID:S0004122, Chr XII from 408156-407284, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017921 // cdna:Genscan chromosome:SGD1:XII:407284:408156:-1 // ensembl // 11 // --- /// YLR132C // cdna:known chromosome:SGD1:XII:407284:408156:-1 gene:YLR132C // ensembl // 11 // --- --- No cerevisiae_gene -4.05102092240712 -1.17120976249995 1.19913953192745 1.30159651889073 1.16305495336105 Max fold change at or above threshold 4 4.05102092240712 Max fold change at or above threshold -0.409217467293006 -1.16056378196608 1.14092867539671 0.428852573862381 115.206899642944 20.7616710329874 0.180212045435934 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778841_at SPAC4D7.06c.S1 --- 4.0489934809879 --- --- --- --- 2.92085075378418 11.8265056610107 4.51420164108276 0.961540758609772 0.366210997104645 0.366210997104645 0.5 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4D7.06c /DEF=siroheme synthase (predicted) --- --- --- --- --- --- SPAC4D7.06c // |||siroheme synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.02604682613639 4.0489934809879 2.8286991296012 1.54550917578869 -3.03767752706317 Max fold change at or above threshold 3 4.0489934809879 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772912_at SPAC3F10.07c.S1 --- 4.04864205644526 --- --- --- --- 4.56952238082886 18.5003604888916 5.70657539367676 9.54276561737061 0.466064006090164 0.194580003619194 0.432372987270355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3F10.07c /DEF=dubious --- --- --- --- --- --- SPAC3F10.07c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.85884270064968 4.04864205644526 2.00933279334838 1.24883410520503 2.08835077762321 Max fold change at or above threshold 4 4.04864205644526 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777694_at SPBC17G9.11c.S1 --- 4.04802604683576 --- --- --- --- 2.31005907058716 0.884433746337891 3.09138011932373 6.30439472198486 0.665526986122131 0.780517995357513 0.567627012729645 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17G9.11c /GEN=pyr1 /DEF=pyruvate carboxylase --- --- --- --- --- --- SPBC17G9.11c // |pyr1||pyruvate carboxylase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -4.04802604683576 -2.61190742681659 1.50050654911865 1.33822557123528 2.72910541650454 Max fold change at or above threshold 2 4.04802604683576 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774024_at SPCC757.11c.S1 --- 4.04676876666165 --- --- --- --- 2.52664113044739 2.34651398658752 3.7356550693512 0.624360144138336 0.334473013877869 0.432372987270355 0.432372987270355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC757.11c /DEF=transporter --- --- --- --- --- --- SPCC757.11c // |||membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.82824314950154 -1.0767637205188 -1.17898117346079 1.4785063950454 -4.04676876666165 Max fold change at or above threshold 2 4.04676876666165 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778762_at SPBC83.13.S1 --- 4.04661110359097 --- --- --- --- 10.4773292541504 4.65246391296387 7.53701305389404 8.88693332672119 0.601073980331421 0.725830018520355 0.567627012729645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC83.13 /DEF=mitochondrial carrier --- --- --- --- --- --- SPBC83.13 // |||mitochondrial tricarboxylic acid transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- D89111 // gb // 8 // Cross Hyb Matching Probes No No 1.07918552200946 -2.25199581343464 -4.04661110359097 -1.39011690430033 -1.17895891292975 Max fold change at or above threshold 4 4.04661110359097 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775771_at YBR195C.S1 Subunit of chromatin assembly factor I (CAF-I), regulates the RAS/cAMP pathway via sequestration of Npr1p kinase; localizes to the nucleus and cytoplasm; homologous to human retinoblastoma binding proteins RbAp48 and RbAp46 4.04644672657714 87.78564453125 332.369812011719 MSI1 6281 // DNA repair // inferred from mutant phenotype /// 6334 // nucleosome assembly // inferred from mutant phenotype /// 6342 // chromatin silencing // inferred from mutant phenotype /// 7265 // Ras protein signal transduction // traceable author statement 5677 // chromatin silencing complex // inferred from mutant phenotype /// 5678 // chromatin assembly complex // traceable author statement /// 5678 // chromatin assembly complex // inferred from direct assay 30528 // transcription regulator activity // inferred from mutant phenotype 326.711273193359 80.7402877807617 94.8310012817383 338.028350830078 0.000244141003349796 0.018554700538516 0.00805663969367743 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR195C /GEN=MSI1 /DB_XREF=GI:6319672 /SEG=NC_001134:-610571,611839 /DEF=chromatin assembly complex, subunit 3: Encodes the smallest (p50) subunit of the yeast Chromatin Assembly Factor-I (CAF-I) involved in DNA-replication-linked nucleosome assembly. Homologous to the small subunit of the Human CAF-I. /NOTE=Msi1p; go_component: chromatin assembly complex [goid GO:0005678] [evidence IDA] [pmid 9030687]; go_component: chromatin assembly complex [goid GO:0005678] [evidence TAS] [pmid 9436982]; go_component: chromatin silencing complex [goid GO:0005677] [evidence IMP] [pmid 9436982]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 9927445]; go_process: RAS protein signal transduction [goid GO:0007265] [evidence TAS] [pmid 8350924]; go_process: chromatin silencing [goid GO:0006342] [evidence IMP] [pmid 9436982]; go_process: nucleosome assembly [goid GO:0006334] [evidence IMP] [pmid 9030687] --- --- --- --- --- --- S0000399 // MSI1 SGDID:S0000399, Chr II from 611877-610609, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021295 // cdna:Genscan chromosome:SGD1:II:610609:611877:-1 // ensembl // 11 // --- /// GENEFINDER00000022162 // cdna:GeneFinder chromosome:SGD1:II:610609:611877:-1 // ensembl // 11 // --- /// YBR195C // cdna:known chromosome:SGD1:II:610609:611877:-1 gene:YBR195C // ensembl // 11 // --- --- No cerevisiae_gene -1.28962664078983 -4.04644672657714 -1.50113401736607 -3.44519480736807 1.03463938518589 Max fold change at or above threshold 4 4.04644672657714 Max fold change at or above threshold 0.824828690599151 -0.914670232795094 -0.815021158642341 0.904862700838284 210.077728271484 141.403355934616 0.673100176292271 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1778466_at SPAP8A3.09c.S1 --- 4.04623503886715 --- --- --- --- 1.03471565246582 0.586933135986328 4.18670272827148 3.19998002052307 0.601073980331421 0.805419981479645 0.533936023712158 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP8A3.09c /GEN=paa1 /DEF=protein phosphotase regulatory subunit --- --- --- --- --- --- SPAP8A3.09c // |paa1||protein phosphatase regulatory subunit A|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.34630193759733 -1.76291912830412 -2.97818955171248 4.04623503886715 3.09261777658164 Max fold change at or above threshold 2 4.04623503886715 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771831_at YLR430W.S1 Nuclear protein, putative helicase required for processing of tRNAs, rRNAs, and small nuclear RNAs; potential Cdc28p substrate 4.04375987791533 281.158447265625 1169.45751953125 SEN1 6365 // 35S primary transcript processing // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 4004 // ATP-dependent RNA helicase activity // traceable author statement 1125.00341796875 278.207275390625 284.109619140625 1213.91162109375 0.000244141003349796 0.0107421996071935 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR430W /GEN=SEN1 /DB_XREF=GI:6323462 /SEG=NC_001144:+993430,1000125 /DEF=Nuclear protein, putative helicase required for processing of tRNAs, rRNAs, and small nuclear RNAs; potential Cdc28p substrate /NOTE=Sen1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8544822]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence IMP] [pmid 9365256] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 3.70000004768372 --- S0004422 // SEN1 SGDID:S0004422, Chr XII from 993430-1000125, Verified ORF // sgd // 11 // --- /// M74589 // Saccharomyces cerevisiae SEN1 mRNA. // gb // 11 // --- /// GENEFINDER00000024647 // cdna:GeneFinder chromosome:SGD1:XII:994453:1000125:1 // ensembl // 11 // --- /// GENSCAN00000018146 // cdna:Genscan chromosome:SGD1:XII:994780:1000125:1 // ensembl // 11 // --- /// YLR430W // cdna:known chromosome:SGD1:XII:993430:1000125:1 gene:YLR430W // ensembl // 11 // --- --- No cerevisiae_gene -2.52129245665704 -4.04375987791533 -1.79693138242604 -3.95975124450788 1.07902927378259 Max fold change at or above threshold 4 4.04375987791533 Max fold change at or above threshold 0.777393492294211 -0.869595073506561 -0.858115223541634 0.950316804753984 725.307983398438 514.148161172212 0.708868746712487 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-25srRnad_at AFFX-25srRnad Identified by fungal homology and RT-PCR 4.03969026137943 125.895687103271 211.978042602539 --- --- --- --- 276.578765869141 183.326034545898 68.4653396606445 147.377319335938 5.16732470714487E-5 4.42872878920753E-5 5.16732470714487E-5 4.42872878920753E-5 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /GEN=25S rRNA /DB_XREF=gb:J01355.1 /NOTE=SIF corresponding to nucleotides 2366-2654 of gb:J01355.1 /DEF=S.cerevisiae 25S rRNA gene and flanks. --- --- --- --- --- --- L10643 // Saccharomyces cerevisiae 25S ribosomal RNA, partial. // gb // 0 // chr12:463694-463982(-) /// M19229 // Yeast (S.cerevisiae) 28S large subunit rRNA, 5' end. // gb // 0 // chr12:463950-464317(-) /// YLR154C-G // cdna:known chromosome:SGD1:XII:462523:462672:-1 gene:YLR154C-G // ensembl // 0 // chr12:462522-462672(-) /// D83562 // Saccharomyces cerevisiae 26S ribosomal rRNA, partial sequence. // gb // 0 // chr12:462482-462707(-) /// D83572 // Saccharomyces cerevisiae 26S ribosomal RNA, partial sequence. // gb // 0 // chr12:463696-463826(-) /// L11088 // Saccharomyces cerevisiae 25S ribosomal RNA sequence. // gb // 0 // chr12:463700-463969(-) /// L10682 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 25S ribosomal RNA, partial. // gb // 0 // chr12:462486-462734(-) /// L19652 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:462493-462760(-) /// D23716 // Saccharomyces cerevisiae 26S ribosomal RNA, partial sequence. // gb // 0 // chr12:463696-463826(-) /// D25212 // Yeast (strain IFO 2376) 26S rRNA, partial sequence. // gb // 0 // chr12:462482-462707(-) /// L21852 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:462492-462773(-) /// S0028561 // YLR154C-G SGDID:S0028561, Chr XII from 462672-462523, reverse complement, Uncharacterized ORF // sgd // 0 // chr12:462522-462672(-) /// L20827 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:463694-464013(-) /// L20827 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:454557-454876(-) /// M19229 // Yeast (S.cerevisiae) 28S large subunit rRNA, 5' end. // gb // 0 // chr12:454813-455180(-) /// L10643 // Saccharomyces cerevisiae 25S ribosomal RNA, partial. // gb // 0 // chr12:454557-454845(-) /// YLR154C-G // cdna:known chromosome:SGD1:XII:462523:462672:-1 gene:YLR154C-G // ensembl // 0 // chr12:453385-453535(-) /// D83562 // Saccharomyces cerevisiae 26S ribosomal rRNA, partial sequence. // gb // 0 // chr12:453345-453570(-) /// L11088 // Saccharomyces cerevisiae 25S ribosomal RNA sequence. // gb // 0 // chr12:454563-454832(-) /// D83572 // Saccharomyces cerevisiae 26S ribosomal RNA, partial sequence. // gb // 0 // chr12:454559-454689(-) /// L10682 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 25S ribosomal RNA, partial. // gb // 0 // chr12:453349-453597(-) /// L19652 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:453356-453623(-) /// D23716 // Saccharomyces cerevisiae 26S ribosomal RNA, partial sequence. // gb // 0 // chr12:454559-454689(-) /// D25212 // Yeast (strain IFO 2376) 26S rRNA, partial sequence. // gb // 0 // chr12:453345-453570(-) /// L21852 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:453355-453636(-) /// S0028561 // YLR154C-G SGDID:S0028561, Chr XII from 462672-462523, reverse complement, Uncharacterized ORF // sgd // 0 // chr12:453385-453535(-) --- AFFX_control cerevisiae_gene 1.33597026481383 -1.50867151277357 1.76928892666425 -4.03969026137943 -1.87667116701109 Max fold change at or above threshold 4 4.03969026137943 Max fold change at or above threshold 1.24701719247261 0.166696628572752 -1.1639493365116 -0.249764484533765 168.936864852905 86.3195003773772 0.510957158181764 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 No No 3 < x
1778585_at YLR013W.S1 Protein containing GATA family zinc finger motifs 4.03713437174327 14.6069858074188 19.1243963241577 GAT3 6350 // transcription // inferred from sequence similarity 5634 // nucleus // inferred from sequence similarity 3700 // transcription factor activity // inferred from sequence similarity 13.7458610534668 21.8093643188477 7.40460729598999 24.5029315948486 0.00805663969367743 0.00195312988944352 0.0461426004767418 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR013W /GEN=GAT3 /DB_XREF=GI:6323041 /SEG=NC_001144:+171338,171763 /DEF=Protein containing GATA family zinc finger motifs /NOTE=Gat3p; go_component: nucleus [goid GO:0005634] [evidence ISS] [pmid 10392447]; go_function: transcription factor activity [goid GO:0003700] [evidence ISS] [pmid 10392447]; go_process: transcription [goid GO:0006350] [evidence ISS] [pmid 10392447] --- --- --- --- --- --- S0004003 // GAT3 SGDID:S0004003, Chr XII from 171338-171763, Verified ORF // sgd // 11 // --- /// YLR013W // cdna:known chromosome:SGD1:XII:171338:171763:1 gene:YLR013W // ensembl // 11 // --- --- No cerevisiae_gene -4.03713437174327 1.58661318007046 3.4102328498541 -1.85639298668965 1.7825679671532 Max fold change at or above threshold 4 4.03713437174327 Max fold change at or above threshold -0.400535119195043 0.634686745064702 -1.21464833035267 0.980496704483013 16.8656910657883 7.7891547153004 0.461834305212702 PAPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1780016_at YML046W.S1 U1 snRNP protein involved in splicing, contains multiple tetriatricopeptide repeats 4.03544698060182 91.477222442627 360.437622070313 PRP39 398 // nuclear mRNA splicing, via spliceosome // inferred from mutant phenotype 243 // commitment complex // inferred from physical interaction /// 243 // commitment complex // traceable author statement /// 5685 // snRNP U1 // inferred from physical interaction /// 5685 // snRNP U1 // inferred from direct assay /// 5685 // snRNP U1 // traceable author statement 3723 // RNA binding // inferred from physical interaction 336.874786376953 83.4789276123047 99.4755172729492 384.000457763672 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML046W /GEN=PRP39 /DB_XREF=GI:6323596 /SEG=NC_001145:+181474,183363 /DEF=U1 snRNP protein involved in splicing, contains multiple tetriatricopeptide repeats /NOTE=Prp39p; go_component: commitment complex [goid GO:0000243] [evidence IPI,TAS] [pmid 10072386]; go_component: snRNP U1 [goid GO:0005685] [evidence IPI,TAS] [pmid 10072386]; go_component: snRNP U1 [goid GO:0005685] [evidence IDA] [pmid 11804584]; go_function: RNA binding [goid GO:0003723] [evidence IPI] [pmid 8196608]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IMP] [pmid 8196608] --- --- --- --- --- --- S0004509 // PRP39 SGDID:S0004509, Chr XIII from 181474-183363, Verified ORF // sgd // 11 // --- /// GENSCAN00000018678 // cdna:Genscan chromosome:SGD1:XIII:181474:183363:1 // ensembl // 11 // --- /// YML046W // cdna:known chromosome:SGD1:XIII:181474:183363:1 gene:YML046W // ensembl // 11 // --- --- No cerevisiae_gene -1.86426390651383 -4.03544698060182 1.03240296219315 -3.38650952125846 1.13989076443966 Max fold change at or above threshold 4 4.03544698060182 Max fold change at or above threshold 0.70824906802252 -0.909778751461928 -0.807634512743963 1.00916419618337 225.95742225647 156.607850441897 0.693085665777073 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771343_at SPAC17G6.04c.S1 --- 4.0350376152445 --- --- --- --- 2.7859582901001 11.2414464950562 1.49666833877563 1.32103824615479 0.533936023712158 0.398925989866257 0.696289002895355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G6.04c /GEN=cpp1 /DEF=protein farnesyltransferase (beta subunit) (PMID 10617635) --- --- --- --- --- --- SPAC17G6.04c // |cpp1||protein farnesyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.11995389706393 4.0350376152445 2.56099482112177 -1.8614399850131 -2.10891569431039 Max fold change at or above threshold 2 4.0350376152445 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777245_at YNR023W.S1 73 kDa subunit of the 11-subunit SWI/SNF chromatin remodeling complex involved in transcriptional regulation; homolog of Rsc6p subunit of the RSC chromatin remodeling complex; deletion mutants are temperature-sensitive 4.03439332973574 161.404937744141 486.275604248047 SNF12 6338 // chromatin remodeling // traceable author statement 16514 // SWI/SNF complex // traceable author statement /// 16585 // chromatin remodeling complex // traceable author statement 16251 // general RNA polymerase II transcription factor activity // traceable author statement 488.930969238281 121.190704345703 201.619171142578 483.620239257813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR023W /GEN=SNF12 /DB_XREF=GI:6324350 /SEG=NC_001146:+670417,672117 /DEF=73 kDa subunit of the SWI/SNF transcription activation complex, homolog of Rsc6p subunit of the RSC chromatin remodeling complex /NOTE=Snf12p; go_component: SWI/SNF complex [goid GO:0016514] [evidence TAS] [pmid 9726966]; go_component: nucleosome remodeling complex [goid GO:0005679] [evidence TAS] [pmid 9048886]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9048886]; go_process: chromatin remodeling [goid GO:0006338] [evidence TAS] [pmid 9048886] --- --- --- --- scop // a.4.1.Centromere-binding // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding // 9.60000038146973 --- S0005306 // SNF12 SGDID:S0005306, Chr XIV from 670418-672118, Verified ORF // sgd // 11 // --- /// GENSCAN00000020055 // cdna:Genscan chromosome:SGD1:XIV:670418:672118:1 // ensembl // 11 // --- /// GENEFINDER00000020541 // cdna:GeneFinder chromosome:SGD1:XIV:670418:672118:1 // ensembl // 11 // --- /// YNR023W // cdna:known chromosome:SGD1:XIV:670418:672118:1 gene:YNR023W // ensembl // 11 // --- --- No cerevisiae_gene -1.45190924286039 -4.03439332973574 -1.01118398090392 -2.42502221622827 -1.01098119877824 Max fold change at or above threshold 4 4.03439332973574 Max fold change at or above threshold 0.866941711852543 -1.06417480868811 -0.641820348812545 0.839053445648107 323.840270996094 190.428832740566 0.588033205860499 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774871_at YMR148W.S1 Hypothetical protein 4.03334279124516 676.781066894531 2579.83215332031 --- --- 16021 // integral to membrane // inferred from sequence similarity --- 2628.88330078125 651.787719726563 701.7744140625 2530.78100585938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR148W /GEN=TIF34 /DB_XREF=GI:6323797 /SEG=NC_001145:+560365,560811 /DEF=Hypothetical ORF /NOTE=Ymr148wp; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 12524434]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004756 // span:7-29,33-52 // numtm:2 S0004756 // YMR148W SGDID:S0004756, Chr XIII from 560365-560811, Uncharacterized ORF // sgd // 10 // --- /// YMR148W // cdna:known chromosome:SGD1:XIII:560365:560811:1 gene:YMR148W // ensembl // 10 // --- GENSCAN00000018837 // ensembl // 6 // Cross Hyb Matching Probes /// GENEFINDER00000021964 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene -1.4906286014091 -4.03334279124516 -1.22931657941046 -3.74605179114883 -1.0387636443828 Max fold change at or above threshold 4 4.03334279124516 Max fold change at or above threshold 0.909907894619369 -0.888030128909069 -0.842573055777009 0.82069529006671 1628.30661010742 1099.64612527336 0.675331119119398 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774939_at SPAC222.05c.S1 --- 4.03239754326361 --- --- --- --- 2.45611429214478 0.609095275402069 2.28754234313965 1.0652619600296 0.633789002895355 0.888427972793579 0.665526986122131 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC222.05c /DEF=erathdf family GTP-binding protein --- --- --- --- --- --- SPAC222.05c // |mss1||COX RNA-associated protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.59269954735582 -4.03239754326361 -1.31001332624516 -1.07369129122819 -2.30564347954049 Max fold change at or above threshold 0 4.03239754326361 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772998_at YLR341W.S1 Meiosis-specific protein of unknown function, required for spore wall formation during sporulation; dispensable for both nuclear divisions during meiosis 4.03175117124649 16.4039573669434 5.45733141899109 SPO77 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 5622 // intracellular // inferred from direct assay --- 4.88930034637451 19.7124423980713 13.0954723358154 6.02536249160767 0.194580003619194 0.018554700538516 0.00585938012227416 0.0561522990465164 A P P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR341W /GEN=SPO77 /DB_XREF=GI:6323373 /SEG=NC_001144:+807385,808818 /DEF=Meiosis-specific protein of unknown function, required for spore wall formation during sporulation; dispensible for both nuclear divisions during meiosis /NOTE=Spo77p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 11470404] --- --- --- --- --- --- S0004333 // SPO77 SGDID:S0004333, Chr XII from 807385-808818, Verified ORF // sgd // 11 // --- /// GENSCAN00000018079 // cdna:Genscan chromosome:SGD1:XII:807829:808818:1 // ensembl // 11 // --- /// YLR341W // cdna:known chromosome:SGD1:XII:807385:808818:1 gene:YLR341W // ensembl // 11 // --- --- No cerevisiae_gene 2.33686880498431 4.03175117124649 1.13345695163243 2.67839392307448 1.23235679233238 Max fold change at or above threshold 4 4.03175117124649 Max fold change at or above threshold -0.876982496931641 1.27479631728788 0.314253947483286 -0.712067767839528 10.9306443929672 6.88878520122121 0.63022681495827 APPAPM No 4 0 APPM 1 2 1 No No 1 < x = 2
1779455_at YLR329W.S1 Protein involved in early stages of meiotic recombination; required for chromosome synapsis; forms a complex with Rec104p and Spo11p necessary during the initiation of recombination 4.03166174911327 179.473472595215 716.254364013672 REC102 7131 // meiotic recombination // inferred from mutant phenotype /// 42138 // meiotic DNA double-strand break formation // traceable author statement 5634 // nucleus // inferred from physical interaction 5515 // protein binding // inferred from direct assay 672.971984863281 192.025207519531 166.921737670898 759.536743164063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR329W /GEN=REC102 /DB_XREF=GI:6323361 /SEG=NC_001144:+786731,787333 /DEF=Dispensable for mitotic recombination, DNA damage repair, axial elements & meiotic chromosome condensation; required for wild-type level of chromosome pairing seen by in situ hybridization, tripartite synaptonemal complexes /NOTE=Rec102p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 10592185]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 10592185]; go_process: meiotic DNA double-strand break formation [goid GO:0042138] [evidence TAS] [pmid 9334324]; go_process: meiotic recombination [goid GO:0007131] [evidence IMP] [pmid 1732169] --- --- --- --- --- --- S0004321 // REC102 SGDID:S0004321, Chr XII from 786731-787333, Verified ORF // sgd // 11 // --- /// YLR329W // cdna:known chromosome:SGD1:XII:786731:787333:1 gene:YLR329W // ensembl // 11 // --- --- No cerevisiae_gene -2.06442091222688 -3.50460230485538 -1.85554623049387 -4.03166174911327 1.1286305526052 Max fold change at or above threshold 4 4.03166174911327 Max fold change at or above threshold 0.721298267882332 -0.819766353855527 -0.900203672679562 0.998671758652757 447.863918304443 312.087352184742 0.696835220319301 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770193_at YMR190C.S1 Nucleolar DNA helicase of the RecQ family, involved in maintenance of genome integrity; has similarity to human BLM and WRN helicases implicated in Bloom and Werner syndromes 4.02736158596955 188.936103820801 681.198608398438 SGS1 70 // mitotic sister chromatid segregation // inferred from mutant phenotype /// 722 // telomerase-independent telomere maintenance // inferred from mutant phenotype /// 1302 // replicative cell aging // inferred from mutant phenotype /// 6268 // DNA unwinding // inferred from direct assay /// 7001 // chromosome organization and biogenesis (sensu Eukaryota) // inferred from mutant phenotype /// 45132 // meiotic chromosome segregation // inferred from mutant phenotype 5730 // nucleolus // inferred from direct assay /// 31422 // RecQ helicase-Topo III complex // inferred from physical interaction 4003 // ATP-dependent DNA helicase activity // inferred from direct assay 656.193725585938 162.933898925781 214.93830871582 706.203491210938 0.000244141003349796 0.000732421991415322 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR190C /GEN=SGS1 /DB_XREF=GI:6323844 /SEG=NC_001145:-640914,645257 /DEF=Nucleolar DNA helicase of the RecQ family, involved in maintenance of genome integrity; has similarity to human BLM and WRN helicases implicated in Bloom and Werner syndromes /NOTE=Sgs1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 10198430]; go_function: ATP-dependent DNA helicase activity [goid GO:0004003] [evidence IDA] [pmid 9545297]; go_process: DNA unwinding [goid GO:0006268] [evidence IDA] [pmid 10366502]; go_process: chromosome organization and biogenesis (sensu Eukarya) [goid GO:0007001] [evidence IMP] [pmid 11138010]; go_process: meiotic chromosome segregation [goid GO:0045132] [evidence IMP] [pmid 7736577]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence IMP] [pmid 7736577] --- --- --- --- --- --- S0004802 // SGS1 SGDID:S0004802, Chr XIII from 645257-640914, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018873 // cdna:Genscan chromosome:SGD1:XIII:640914:645257:-1 // ensembl // 11 // --- /// GENEFINDER00000022009 // cdna:GeneFinder chromosome:SGD1:XIII:640914:645257:-1 // ensembl // 11 // --- /// YMR190C // cdna:known chromosome:SGD1:XIII:640914:645257:-1 gene:YMR190C // ensembl // 11 // --- --- No cerevisiae_gene -3.19235135861016 -4.02736158596955 -1.26972398141736 -3.05293983890755 1.07621189242604 Max fold change at or above threshold 4 4.02736158596955 Max fold change at or above threshold 0.773899424776893 -0.952414343327218 -0.770408990832687 0.948923909383012 435.067356109619 285.730112204266 0.656749140545202 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777384_at YML047C.S1 Pheromone-regulated protein, predicted to have 2 transmembrane segments; regulated by Ste12p during mating 4.02717571911632 21.8841242790222 8.99326205253601 PRM6 747 // conjugation with cellular fusion // inferred from expression pattern 16021 // integral to membrane // inferred from sequence similarity --- 6.91757917404175 27.8583068847656 15.9099416732788 11.0689449310303 0.171387001872063 0.000244141003349796 0.00195312988944352 0.00805663969367743 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML047C /GEN=PRM6 /DB_XREF=GI:6323595 /SEG=NC_001145:-180017,181075 /DEF=Pheromone-regulated protein, predicted to have 2 transmembrane segments; regulated by Ste12p during mating /NOTE=Prm6p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 11062271]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IEP] [pmid 11062271] --- --- --- --- --- S0004510 // span:30-52,73-95,226-248 // numtm:3 S0004510 // PRM6 SGDID:S0004510, Chr XIII from 181075-180017, reverse complement, Verified ORF // sgd // 11 // --- /// YML047C // cdna:known chromosome:SGD1:XIII:180017:181075:-1 gene:YML047C // ensembl // 11 // --- YML047W-A // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene 1.68721012268723 4.02717571911632 -1.33859984181005 2.29992910424227 1.60011828597012 Max fold change at or above threshold 4 4.02717571911632 Max fold change at or above threshold -0.940668986399459 1.37103499141547 0.0520224064977699 -0.482388411513778 15.4386931657791 9.05856801376339 0.586744481316742 AAPAPP No 2 0 APPP 1 3 0 No No 2 < x = 3
1770537_at SPAC6G9.11.S1 --- 4.02664103622129 --- --- --- --- 1.14751482009888 4.37467479705811 0.864089488983154 0.97549706697464 0.753906011581421 0.696289002895355 0.850341975688934 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G9.11 /GEN=syb1 /DEF=synaptobrevin (PMID 12565827) --- --- --- --- --- --- SPAC6G9.11 // |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.08834722687972 3.81230352796764 4.02664103622129 -1.32800460453379 -1.17633856517655 Max fold change at or above threshold 1 4.02664103622129 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771951_at YJL144W.S1 Hypothetical protein 4.02639890420523 4629.35327148438 1216.58966064453 --- 9269 // response to dessication // inferred from expression pattern /// 9269 // response to dessication // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay --- 1256.04467773438 5057.3369140625 4201.36962890625 1177.13464355469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL144W /GEN=SFH5 /DB_XREF=GI:6322317 /SEG=NC_001142:+146277,146591 /DEF=Hypothetical ORF /NOTE=Yjl144wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to dessication [goid GO:0009269] [evidence IEP,ISS] [pmid 10681550] --- --- --- --- --- --- S0003680 // YJL144W SGDID:S0003680, Chr X from 146277-146591, Uncharacterized ORF // sgd // 11 // --- /// YJL144W // cdna:known chromosome:SGD1:X:146277:146591:1 gene:YJL144W // ensembl // 11 // --- --- No cerevisiae_gene 1.98776910638574 4.02639890420523 -1.03242757065938 3.34492052980519 -1.06703569095664 Max fold change at or above threshold 4 4.02639890420523 Max fold change at or above threshold -0.832894137005454 1.06645383607128 0.638762507174151 -0.872322206239978 2922.97146606445 2001.36693760778 0.684702865164284 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774684_at SPBC2G2.15c.S1 --- 4.02637096191067 --- --- --- --- 2.59879112243652 0.645442545413971 6.30712461471558 3.5230655670166 0.266357421875 0.850341975688934 0.274170011281967 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G2.15c /DEF=rRNA methyltransferase (predicted) --- --- --- --- --- --- D89210 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1164. // gb // 10 // --- /// SPBC2G2.15c // |||rRNA methyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.80143429613619 -4.02637096191067 1.14473079195458 2.4269455749111 1.35565553406751 Max fold change at or above threshold 3 4.02637096191067 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775741_at SPAC343.02.S1 --- 4.0252576719331 --- --- --- --- 0.98019814491272 3.62732911109924 0.243511900305748 0.551170349121094 0.828612983226776 0.725830018520355 0.97509765625 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC343.02 /GEN=img1 /DEF=mitochondrial ribosomal protein subunit l19 --- --- --- --- --- --- SPAC343.02 // |img1||mitochondrial ribosomal protein subunit L19|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.14593424042183 3.70060801474199 2.7607556730327 -4.0252576719331 -1.77839418698005 Max fold change at or above threshold 1 4.0252576719331 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770918_at SPCC162.09c.S1 --- 4.0225368693464 --- --- --- --- 1.12603366374969 4.49245595932007 2.50351142883301 4.08278894424438 0.780517995357513 0.601073980331421 0.725830018520355 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC162.09c /GEN=hmg1 /DEF=3-hydroxy-3-methylglutaryl-CoA reductase (predicted) --- --- --- --- --- --- SPCC162.09c // |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.26447745439676 3.98962846666607 4.0225368693464 2.22330069644304 3.62581428573697 Max fold change at or above threshold 3 4.0225368693464 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770426_at SPAC922.06.S1 --- 4.02232733565821 --- --- --- --- 2.5792510509491 2.66458034515381 6.49694538116455 1.01303815841675 0.601073980331421 0.327392578125 0.219482004642487 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC922.06 /DEF=oxidoreductase (predicted) --- --- --- --- --- --- SPAC922.06 // |||oxidoreductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.23857192759991 1.03308297351408 -4.02232733565821 2.51892710435219 -2.54605518017223 Max fold change at or above threshold 3 4.02232733565821 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773578_at SPBC1604.01.S1 --- 4.02228994510143 --- --- --- --- 2.36181116104126 0.728755474090576 0.587180733680725 2.63364815711975 0.601073980331421 0.962401986122131 0.953857004642487 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1604.01 /DEF=DUF323 --- --- --- --- --- --- SPBC1604.01 // ||SPBC1677.01c|DUF323|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.68290731195982 -3.24088290930315 -3.10156294456982 -4.02228994510143 1.11509683778387 Max fold change at or above threshold 1 4.02228994510143 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772945_at YBR230W-A.S1 --- 4.02063245690414 1029.96774291992 313.578109741211 --- --- --- --- 285.366760253906 912.580627441406 1147.35485839844 341.789459228516 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR230W-A /GEN=ROT2 /DB_XREF=GI:46411187 /SEG=NC_001134:+680319,680519 /DEF=Ybr230w-ap /NOTE=Ybr230cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0029722 // YBR230W-A SGDID:S0029722, Chr II from 680357-680557, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021322 // cdna:Genscan chromosome:SGD1:II:680357:680557:1 // ensembl // 11 // --- /// YBR230W-A // cdna:known chromosome:SGD1:II:680357:680557:1 gene:YBR230W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.31811468802248 3.19792195359205 1.1163707485634 4.02063245690414 1.19771994090835 Max fold change at or above threshold 4 4.02063245690414 Max fold change at or above threshold -0.908779899477806 0.56635017145553 1.11851036127709 -0.776080633254815 671.772926330566 425.192245447653 0.63294043088367 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777804_at SPAPB1A11.01.S1 --- 4.01879623533107 --- --- --- --- 7.49295282363892 7.66776752471924 7.0474705696106 1.86447691917419 0.0676269978284836 0.0952147990465164 0.0676269978284836 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1A11.01 /DEF=membrane transporter (predicted) --- --- --- --- --- --- SPAPB1A11.01 // ||SPAPB24D3.11|membrane transporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.93189832204037 1.02333054874292 1.51047371489413 -1.06321165156039 -4.01879623533107 Max fold change at or above threshold 3 4.01879623533107 Max fold change at or above threshold APAPAA No 4 0 AAAA 4 0 0 No No x = 1
1778902_at SPAC22E12.03c.S1 --- 4.01754289806394 --- --- --- --- 0.798203349113464 2.48569512367249 0.752752900123596 0.319341480731964 0.780517995357513 0.633789002895355 0.888427972793579 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22E12.03c /DEF=THIJPFPI family protein --- --- --- --- --- --- SPAC22E12.03c // |||THIJ/PFPI family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 4.01754289806394 3.11411262109243 1.80247408269195 -1.06037897560063 -2.49952917887115 Max fold change at or above threshold 0 4.01754289806394 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769832_at YNR062C.S1 Hypothetical protein 4.01419275131635 15.6291465759277 28.4854421615601 --- --- 16021 // integral to membrane // inferred from sequence similarity --- 35.1384658813477 22.5047359466553 8.7535572052002 21.8324184417725 0.0561522990465164 0.030273400247097 0.567627012729645 0.018554700538516 M P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR062C /GEN=FRE4 /DB_XREF=GI:6324390 /SEG=NC_001146:-744357,745340 /DEF=Hypothetical ORF /NOTE=Ynr062cp; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 12524434]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005345 // span:13-35,50-72,105-127,142-164,196-218,238-260,273-295,300-322 // numtm:8 S0005345 // YNR062C SGDID:S0005345, Chr XIV from 745341-744358, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YNR062C // cdna:known chromosome:SGD1:XIV:744358:745341:-1 gene:YNR062C // ensembl // 11 // --- --- No cerevisiae_gene -2.00442083589834 -1.56138094508814 -1.59798076491046 -4.01419275131635 -1.60946282589181 Max fold change at or above threshold 4 4.01419275131635 Max fold change at or above threshold 1.21393335439157 0.0415226002537215 -1.23458745765423 -0.0208684969910629 22.0572943687439 10.7758564053626 0.488539356877445 MPPPAP Called_P_>2EXP 4 0 MPAP 1 2 1 Yes No 1 < x = 2
1771947_at SPBC359.05.S1 --- 4.01249192382197 --- --- --- --- 1.24487364292145 0.790506482124329 0.501708149909973 2.33201622962952 0.567627012729645 0.696289002895355 0.696289002895355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC359.05 /DEF=transporter activity --- --- --- --- --- --- SPBC359.05 // |||ABC transporter family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.83060860924312 -1.57477980392532 -4.01249192382197 -2.48127052180601 1.87329552914044 Max fold change at or above threshold 0 4.01249192382197 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774515_at YOR110W.S1 One of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part of the TauA globular domain of TFIIIC that binds DNA at the BoxA promoter sites of tRNA and similar genes 4.01209331336452 130.946773529053 461.025924682617 TFC7 6384 // transcription initiation from RNA polymerase III promoter // traceable author statement 127 // transcription factor TFIIIC complex // traceable author statement 3709 // RNA polymerase III transcription factor activity // traceable author statement 410.955535888672 102.429206848145 159.464340209961 511.096313476563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR110W /GEN=TFC7 /DB_XREF=GI:6324684 /SEG=NC_001147:+528941,530248 /DEF=Transcription factor for RNA polymerase III /NOTE=Tfc7p; go_component: transcription factor TFIIIC complex [goid GO:0000127] [evidence TAS] [pmid 10384303]; go_function: RNA polymerase III transcription factor activity [goid GO:0003709] [evidence TAS] [pmid 10384303]; go_process: transcription initiation from Pol III promoter [goid GO:0006384] [evidence TAS] [pmid 10384303] --- --- --- --- --- --- S0005636 // TFC7 SGDID:S0005636, Chr XV from 528941-530248, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022884 // cdna:GeneFinder chromosome:SGD1:XV:525278:530248:1 // ensembl // 11 // --- /// GENSCAN00000017542 // cdna:Genscan chromosome:SGD1:XV:528941:530248:1 // ensembl // 11 // --- /// YOR110W // cdna:known chromosome:SGD1:XV:528941:530248:1 gene:YOR110W // ensembl // 11 // --- --- No cerevisiae_gene -1.83137399993078 -4.01209331336452 1.10269592938345 -2.57709990426437 1.24367788931555 Max fold change at or above threshold 4 4.01209331336452 Max fold change at or above threshold 0.585701890187078 -0.986062328975805 -0.695501124257648 1.09586156304637 295.986349105835 196.293009650549 0.663182644211612 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779834_at SPAC14C4.12c.S1 --- 4.01197287744369 --- --- --- --- 1.23246920108795 1.55041706562042 1.49670386314392 4.94463300704956 0.696289002895355 0.780517995357513 0.533936023712158 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC14C4.12c /DEF=SWIRM domain --- --- --- --- --- --- SPAC14C4.12c // |||SWIRM domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -3.79941702490502 1.25797631636702 2.23397078607844 1.21439453563847 4.01197287744369 Max fold change at or above threshold 1 4.01197287744369 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774114_at SPAC890.03.S1 --- 4.01176508270608 --- --- --- --- 2.34473347663879 9.40651988983154 5.65249443054199 3.17351889610291 0.398925989866257 0.219482004642487 0.219482004642487 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC890.03 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPAC890.03 // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.0657800502806 4.01176508270608 2.15712868694726 2.41071937892272 1.35346679173626 Max fold change at or above threshold 3 4.01176508270608 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774829_at YIL011W.S1 Cell wall mannoprotein of the Srp1p/Tip1p family of serine-alanine-rich proteins; expressed under anaerobic conditions and required for anaerobic growth 4.01138652960772 148.876495361328 559.466583251953 TIR3 --- 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 559.616638183594 158.245956420898 139.507034301758 559.316528320313 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL011W /GEN=TIR3 /DB_XREF=GI:6322179 /SEG=NC_001141:+333724,334533 /DEF=TIP1-related /NOTE=Tir3p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001273 // TIR3 SGDID:S0001273, Chr IX from 333724-334533, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019026 // cdna:GeneFinder chromosome:SGD1:IX:333724:334533:1 // ensembl // 11 // --- /// YIL011W // cdna:known chromosome:SGD1:IX:333724:334533:1 gene:YIL011W // ensembl // 11 // --- --- No cerevisiae_gene 1.31755017227522 -3.53637243466203 -1.25011652403933 -4.01138652960772 -1.00053656534017 Max fold change at or above threshold 4 4.01138652960772 Max fold change at or above threshold 0.866207343840392 -0.826070710226505 -0.905078640052928 0.864942006439041 354.171539306641 237.177738491685 0.669669107111221 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779573_at YGR261C.S1 Beta3-like subunit of the yeast AP-3 complex; functions in transport of alkaline phosphatase to the vacuole via the alternate pathway; exists in both cytosolic and peripherally associated membrane-bound pools 4.01076885316021 189.821586608887 634.009063720703 APL6 6896 // Golgi to vacuole transport // inferred from mutant phenotype /// 16192 // vesicle-mediated transport // traceable author statement 30123 // AP-3 adaptor complex // inferred from sequence similarity --- 636.565063476563 158.713973999023 220.92919921875 631.453063964844 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR261C /GEN=APL6 /DB_XREF=GI:6321700 /SEG=NC_001139:-1014326,1016755 /DEF=beta3-like subunit of the yeast AP-3 complex which functions in transport of alkaline phosphatase to the vacuole via the alternate pathway, suppressor of loss of casein kinase 1 function /NOTE=Apl6p; go_component: AP-3 adaptor complex [goid GO:0030123] [evidence ISS] [pmid 9335339]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi to vacuole transport [goid GO:0006896] [evidence IMP] [pmid 9335339] --- --- --- --- --- --- S0003493 // APL6 SGDID:S0003493, Chr VII from 1016756-1014327, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019542 // cdna:Genscan chromosome:SGD1:VII:1014327:1016756:-1 // ensembl // 11 // --- /// GENEFINDER00000021383 // cdna:GeneFinder chromosome:SGD1:VII:1014327:1016549:-1 // ensembl // 11 // --- /// YGR261C // cdna:known chromosome:SGD1:VII:1014327:1016756:-1 gene:YGR261C // ensembl // 11 // --- --- No cerevisiae_gene -3.10969440219007 -4.01076885316021 1.07272278719116 -2.8813079743537 -1.0080956128071 Max fold change at or above threshold 4 4.01076885316021 Max fold change at or above threshold 0.871698594957736 -0.982486174750383 -0.741075146112769 0.851862725905417 411.915325164795 257.714925332259 0.625650247970635 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780244_at YGR173W.S1 Protein with similarity to mammalian developmentally regulated GTP-binding protein 4.01051663749201 197.086029052734 742.417938232422 RBG2 --- 5737 // cytoplasm // inferred from direct assay 5525 // GTP binding // inferred from sequence similarity 693.66357421875 221.210906982422 172.961151123047 791.172302246094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR173W /GEN=YIP1 /DB_XREF=GI:6321612 /SEG=NC_001139:+843857,844963 /DEF=GTPase, interacts with ribosomes /NOTE=Ygr173wp --- --- --- --- --- --- S0003405 // RBG2 SGDID:S0003405, Chr VII from 843859-844965, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019476 // cdna:Genscan chromosome:SGD1:VII:843859:844965:1 // ensembl // 11 // --- /// YGR173W // cdna:known chromosome:SGD1:VII:843859:844965:1 gene:YGR173W // ensembl // 11 // --- GENEFINDER00000021524 // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene 1.21355612995144 -3.13575665721524 -1.44958008354516 -4.01051663749201 1.14057063344744 Max fold change at or above threshold 4 4.01051663749201 Max fold change at or above threshold 0.704202396410895 -0.781662178988833 -0.933407756852762 1.0108675394307 469.751983642578 317.964823348204 0.676878085500826 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-ThrX-M_at AFFX-ThrX-M --- 4.00943744937442 --- --- --- --- 0.778530836105347 0.61284327507019 3.12147068977356 0.231146037578583 0.631562292575836 0.617400765419006 0.45541250705719 0.932321548461914 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=thrC, thrB /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 995-1562 of gb:X04603.1, not 100% identical /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase (EC 2.7.1.39 and EC 4.2.99.2, respectively). --- --- --- --- --- --- X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-ThrX-M // --- // unknown // --- // --- /// AFFX-ThrX-M // B. subtilis /GEN=thrC, thrB /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 995-1562 of gb:X04603.1, not 100% identical /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase (EC 2.7.1.39 and EC 4.2.99.2, respectively). // affx // --- // --- /// AFFX-ThrX-M // --- // gb // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X04603 // Bacillus subtilis /REF=X04603 /DEF=B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 /LEN=2073 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-ThrX-M // --- // unknown // --- // --- /// AFFX-ThrX-M // --- // unknown // --- // --- /// AFFX-ThrX-M // --- // unknown // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-ThrX-M // --- // unknown // --- // --- /// AFFX-ThrX-M // --- // affx // --- // --- /// AFFX-ThrX-M // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-ThrX-M // --- // affx // --- // --- /// AFFX-ThrX-M // --- // affx // --- // --- /// AFFX-ThrX-M // --- // affx // --- // --- /// AFFX-ThrX-M // --- // affx // --- // --- /// AFFX-ThrX-M // --- // affx // --- // --- /// AFFX-ThrX-M // --- // affx // --- // --- /// AFFX-ThrX-M // --- // affx // --- // --- /// AFFX-ThrX-M // --- // affx // --- // --- /// AFFX-ThrX-M // --- // affx // --- // --- /// AFFX-ThrX-M // --- // affx // --- // --- /// AFFX-ThrX-M // --- // affx // --- // --- 936665 // gb // 8 // Cross Hyb Matching Probes /// 50812173 // gb // 20 // Negative Strand Matching Probes AFFX_control No 1.88144420506554 -1.27035878139673 2.74797382858735 4.00943744937442 -3.36813403448748 Max fold change at or above threshold 1 4.00943744937442 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769748_at SPBC336.14c.S1 --- 4.0090683241727 --- --- --- --- 1.00685393810272 3.35973262786865 0.361055284738541 0.354436844587326 0.432372987270355 0.24609400331974 0.828612983226776 0.94140625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC336.14c /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPBC336.14c // |||poly|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.67843172853224 3.33686198238407 4.0090683241727 -2.78864201871976 -2.84071465333975 Max fold change at or above threshold 1 4.0090683241727 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769749_at SPBC2G2.01c.S1 --- 3.99977304407639 --- --- --- --- 1.22902238368988 0.95166140794754 4.85181474685669 0.739903509616852 0.696289002895355 0.725830018520355 0.149657994508743 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G2.01c /GEN=liz1 /DEF=transporter --- --- --- --- --- --- SPBC2G2.01c // |liz1|SPBC4B4.13c|pantothenate transporter |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- D89224 // gb // 8 // Cross Hyb Matching Probes No No -2.5653468107645 -1.29144922072707 -3.99977304407639 3.94770250830594 -1.66105764834973 Max fold change at or above threshold 1 3.99977304407639 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771631_at SPCC825.01.S1 --- 3.99786168864772 --- --- --- --- 0.401060223579407 0.832619607448578 1.6033833026886 0.282167583703995 0.805419981479645 0.932372987270355 0.780517995357513 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC825.01 /DEF=ATPase --- --- --- --- --- --- SPCC825.01 // |||ATPase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.7607797613616 2.07604633542954 1.0366309914851 3.99786168864772 -1.42135470813024 Max fold change at or above threshold 0 3.99786168864772 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771463_at YPR010C.S1 RNA polymerase I subunit A135 3.99600456521852 561.0380859375 548.936218261719 RPA135 6360 // transcription from RNA polymerase I promoter // traceable author statement 5736 // DNA-directed RNA polymerase I complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 527.029724121094 502.436889648438 619.639282226563 570.842712402344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR010C /GEN=RPA135 /DB_XREF=GI:6325267 /SEG=NC_001148:-577580,581191 /DEF=RNA polymerase I subunit A135 /NOTE=Rpa135p; go_component: DNA-directed RNA polymerase I complex [goid GO:0005736] [evidence TAS] [pmid 8246845]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 8246845]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS] --- --- --- --- --- --- S0006214 // RPA135 SGDID:S0006214, Chr XVI from 581193-577582, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017194 // cdna:Genscan chromosome:SGD1:XVI:577582:581193:-1 // ensembl // 11 // --- /// GENEFINDER00000020947 // cdna:GeneFinder chromosome:SGD1:XVI:577582:581193:-1 // ensembl // 11 // --- /// YPR010C // cdna:known chromosome:SGD1:XVI:577582:581193:-1 gene:YPR010C // ensembl // 11 // --- --- No cerevisiae_gene 3.99600456521852 -1.04894711152651 -1.13311414719065 1.17571980073782 1.08313191130598 Max fold change at or above threshold 4 3.99600456521852 Max fold change at or above threshold -0.542260062649789 -1.0192607356776 1.25398760429697 0.307533194030417 554.987152099609 51.5572322289417 0.0928980644576942 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774142_at YDR309C.S1 Protein of unknown function involved in initiation of budding and cellular polarization, interacts with Cdc42p via the Cdc42/Rac-interactive binding (CRIB) domain 3.99417728239036 309.988311767578 245.071083068848 GIC2 7096 // regulation of exit from mitosis // inferred from mutant phenotype /// 7096 // regulation of exit from mitosis // inferred from physical interaction /// 7120 // axial bud site selection // inferred from mutant phenotype /// 7266 // Rho protein signal transduction // inferred from physical interaction /// 30468 // establishment of cell polarity (sensu Fungi) // traceable author statement 131 // incipient bud site // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 30478 // actin cap // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay 5083 // small GTPase regulator activity // traceable author statement 227.92594909668 321.524566650391 298.452056884766 262.216217041016 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR309C /GEN=GIC2 /DB_XREF=GI:6320515 /SEG=NC_001136:-1079040,1080191 /DEF=Gtpase-interacting component 2 /NOTE=Gic2p; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IDA] [pmid 10652251]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 9367980]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 9367980]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 9367980]; go_function: small GTPase regulatory/interacting protein activity [goid GO:0005083] [evidence TAS] [pmid 10652251]; go_process: Rho protein signal transduction [goid GO:0007266] [evidence IPI] [pmid 10652251]; go_process: axial budding [goid GO:0007120] [evidence IMP] [pmid 10652251]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence TAS] [pmid 10652251] --- --- --- --- --- --- S0002717 // GIC2 SGDID:S0002717, Chr IV from 1080193-1079042, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023710 // cdna:GeneFinder chromosome:SGD1:IV:1079042:1080193:-1 // ensembl // 11 // --- /// GENSCAN00000025338 // cdna:Genscan chromosome:SGD1:IV:1079042:1080154:-1 // ensembl // 11 // --- /// YDR309C // cdna:known chromosome:SGD1:IV:1079042:1080193:-1 gene:YDR309C // ensembl // 11 // --- --- No cerevisiae_gene 3.99417728239036 1.41065362642851 -1.55190154589076 1.30942553082524 1.15044477419195 Max fold change at or above threshold 4 3.99417728239036 Max fold change at or above threshold -1.20682072242916 1.0703610446089 0.509024777778474 -0.372565099958212 277.529697418213 41.1028310996249 0.148102460680763 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770545_at SPCC4F11.04c.S1 --- 3.99309497184079 --- --- --- --- 15.3266925811768 8.71859645843506 5.14831924438477 3.838299036026 0.219482004642487 0.24609400331974 0.111571997404099 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4F11.04c /DEF=mannosyltransferase (predicted) --- --- --- --- --- --- SPCC4F11.04c // |||mannosyltransferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.8904304807318 -1.75793118241509 -2.17594864332912 -2.97702839579994 -3.99309497184079 Max fold change at or above threshold 4 3.99309497184079 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773605_at YNL175C.S1 Protein of unknown function, localizes to the nucleolus and nucleoplasm; contains an RNA recognition motif (RRM) and has similarity to Nop12p, which is required for processing of pre-18S rRNA 3.99225408960641 82.2030601501465 191.042427062988 NOP13 --- 5654 // nucleoplasm // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay 3723 // RNA binding // inferred from sequence similarity 172.730072021484 71.5394287109375 92.8666915893555 209.354782104492 0.00292969006113708 0.0239257998764515 0.018554700538516 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL175C /GEN=NOP13 /DB_XREF=GI:6324155 /SEG=NC_001146:-307401,308612 /DEF=Protein of unknown function, localizes to the nucleolus and nucleoplasm; contains an RNA recognition motif (RRM) and has similarity to Nop12p, which is required for processing of pre-18S rRNA /NOTE=Nop13p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11452019]; go_component: nucleoplasm [goid GO:0005654] [evidence IDA] [pmid 11452019]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 11452019]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.7.Seryl-tRNA synthetase (SerRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) // 6.0 --- S0005119 // NOP13 SGDID:S0005119, Chr XIV from 308612-307401, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000019900 // cdna:Genscan chromosome:SGD1:XIV:307401:308612:-1 // ensembl // 10 // --- /// GENEFINDER00000020516 // cdna:GeneFinder chromosome:SGD1:XIV:307401:308612:-1 // ensembl // 10 // --- /// YNL175C // cdna:known chromosome:SGD1:XIV:307401:308612:-1 gene:YNL175C // ensembl // 10 // --- --- No cerevisiae_gene 3.99225408960641 -2.41447374034 -1.50436167072092 -1.85997874012003 1.21203435889526 Max fold change at or above threshold 4 3.99225408960641 Max fold change at or above threshold 0.553988924155182 -0.998562817640846 -0.671342058424876 1.11591595191054 136.622743606567 65.1769861102904 0.47705809728123 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1779349_at YDL102W.S1 Catalytic subunit of DNA polymerase delta; required for chromosomal DNA replication during mitosis and meiosis, intragenic recombination, repair of double strand DNA breaks, and DNA replication during nucleotide excision repair (NER) 3.99089917901744 81.4505157470703 237.229919433594 CDC2 6272 // leading strand elongation // traceable author statement /// 6273 // lagging strand elongation // traceable author statement /// 6280 // mutagenesis // traceable author statement /// 6284 // base-excision repair // traceable author statement /// 6289 // nucleotide-excision repair // traceable author statement /// 6298 // mismatch repair // non-traceable author statement /// 6301 // postreplication repair // traceable author statement 5657 // replication fork // inferred from direct assay /// 5659 // delta DNA polymerase complex // traceable author statement 3891 // delta DNA polymerase activity // traceable author statement 216.316223144531 54.2023773193359 108.698654174805 258.143615722656 0.000244141003349796 0.00292969006113708 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL102W /GEN=CDC2 /DB_XREF=GI:6320101 /SEG=NC_001136:+276872,280165 /DEF=Catalytic subunit of DNA polymerase delta; required for chromosomal DNA replication during mitosis and meiosis, intragenic recombination, repair of double strand DNA breaks, and DNA replication during nucleotide excision repair (NER) /NOTE=Cdc2p; go_component: delta DNA polymerase complex [goid GO:0005659] [evidence TAS] [pmid 9745046]; go_function: delta DNA polymerase activity [goid GO:0003891] [evidence TAS] [pmid 9745046]; go_process: base-excision repair [goid GO:0006284] [evidence TAS] [pmid 9745046]; go_process: lagging strand elongation [goid GO:0006273] [evidence TAS] [pmid 9745046]; go_process: leading strand elongation [goid GO:0006272] [evidence TAS] [pmid 9745046]; go_process: mismatch repair [goid GO:0006298] [evidence NAS] [pmid 10072354]; go_process: mutagenesis [goid GO:0006280] [evidence TAS] [pmid 9745046]; go_process: nucleotide-excision repair [goid GO:0006289] [evidence TAS] [pmid 9745046]; go_process: postreplication repair [goid GO:0006301] [evidence TAS] [pmid 9745046] --- --- --- --- --- --- S0002260 // CDC2 SGDID:S0002260, Chr IV from 276872-280165, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023872 // cdna:GeneFinder chromosome:SGD1:IV:276872:280165:1 // ensembl // 11 // --- /// GENSCAN00000025023 // cdna:Genscan chromosome:SGD1:IV:276872:280165:1 // ensembl // 11 // --- /// YDL102W // cdna:known chromosome:SGD1:IV:276872:280165:1 gene:YDL102W // ensembl // 11 // --- --- No cerevisiae_gene -1.07320984638333 -3.99089917901744 1.11148957782245 -1.99005429079794 1.19336225443516 Max fold change at or above threshold 4 3.99089917901744 Max fold change at or above threshold 0.604772785792332 -1.11598740442402 -0.537535741331559 1.04875035996325 159.340217590332 94.2105975875769 0.59125435506681 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773350_at SPCC126.02c.S1 --- 3.98977055778422 --- --- --- --- 8.98097038269043 8.51695251464844 7.60668563842773 2.25099921226501 0.0952147990465164 0.194580003619194 0.171387001872063 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC126.02c /GEN=pku70 /DEF=DNA helicase --- --- --- --- --- --- SPCC126.02c // |pku70||Ku domain protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.57868200584906 -1.05448167842241 -1.6629686222773 -1.18066800832678 -3.98977055778422 Max fold change at or above threshold 3 3.98977055778422 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771591_at YDR297W.S1 Sphinganine C4-hydroxylase, catalyses the conversion of sphinganine to phytosphingosine in sphingolipid biosyntheis 3.9897230054272 634.100799560547 504.365661621094 SUR2 6665 // sphingolipid metabolism // inferred from mutant phenotype /// 6665 // sphingolipid metabolism // inferred from sequence similarity /// 30148 // sphingolipid biosynthesis // traceable author statement 5783 // endoplasmic reticulum // traceable author statement 170 // sphingosine hydroxylase activity // inferred from mutant phenotype /// 170 // sphingosine hydroxylase activity // inferred from sequence similarity 471.866088867188 540.159362792969 728.042236328125 536.865234375 0.00122069998178631 0.00292969006113708 0.000732421991415322 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR297W /GEN=SUR2 /DB_XREF=GI:6320503 /SEG=NC_001136:+1056543,1057592 /DEF=Possibly hydroxylates ceramide-1 at C-4 to give ceramide-2. Or, hydroxylates DHS at C-4 to give PHS, which is acylated to give ceramide-2. Not yet clear whether DHS or ceramide-1 is the preferred substrate. /NOTE=Sur2p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS] [pmid 9556590]; go_function: sphingosine hydroxylase activity [goid GO:0000170] [evidence IMP,ISS] [pmid 9556590]; go_process: sphingolipid biosynthesis [goid GO:0030148] [evidence TAS] [pmid 10366774]; go_process: sphingolipid metabolism [goid GO:0006665] [evidence IMP,ISS] [pmid 9556590] --- --- --- --- --- S0002705 // span:7-29,49-70,97-119,146-168 // numtm:4 S0002705 // SUR2 SGDID:S0002705, Chr IV from 1056545-1057594, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023819 // cdna:GeneFinder chromosome:SGD1:IV:1056545:1057594:1 // ensembl // 11 // --- /// GENSCAN00000025328 // cdna:Genscan chromosome:SGD1:IV:1056545:1057594:1 // ensembl // 11 // --- /// YDR297W // cdna:known chromosome:SGD1:IV:1056545:1057594:1 gene:YDR297W // ensembl // 11 // --- --- No cerevisiae_gene 3.9897230054272 1.14473020108254 -1.07481469968099 1.54290010133159 1.13774913485276 Max fold change at or above threshold 4 3.9897230054272 Max fold change at or above threshold -0.881597312132556 -0.263245313050634 1.43791416818873 -0.293071543005538 569.23323059082 110.444009281409 0.194022420593359 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772813_at YOL155C.S1 ORF 3.98936661386118 3018.69836425781 838.855041503906 --- 7047 // cell wall organization and biogenesis // inferred from genetic interaction 5576 // extracellular region // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay 15926 // glucosidase activity // inferred from sequence similarity 781.276733398438 3116.79931640625 2920.59741210938 896.433349609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL155C /GEN=HXT11 /DB_XREF=GI:6324418 /SEG=NC_001147:-28702,31605 /DEF=ORF /NOTE=Yol155cp; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 11748726]; go_component: extracellular [goid GO:0005576] [evidence IDA] [pmid 11935221]; go_function: glucosidase activity [goid GO:0015926] [evidence ISS] [pmid 11748726]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IGI] [pmid 11748726] --- --- --- --- --- --- S0005515 // YOL155C SGDID:S0005515, Chr XV from 31605-28702, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017346 // cdna:Genscan chromosome:SGD1:XV:28702:31605:-1 // ensembl // 11 // --- /// GENEFINDER00000022849 // cdna:GeneFinder chromosome:SGD1:XV:28702:31605:-1 // ensembl // 11 // --- /// YOL155C // cdna:known chromosome:SGD1:XV:28702:31605:-1 gene:YOL155C // ensembl // 11 // --- S0001431 // sgd // 1 // Cross Hyb Matching Probes /// GENSCAN00000016347 // ensembl // 1 // Cross Hyb Matching Probes /// GENEFINDER00000019051 // ensembl // 1 // Cross Hyb Matching Probes /// YIL169C // ensembl // 1 // Cross Hyb Matching Probes No cerevisiae_gene 2.60683720353944 3.98936661386118 1.01225668996639 3.73823676971054 1.1473954250628 Max fold change at or above threshold 4 3.98936661386118 Max fold change at or above threshold -0.909303039842907 0.941414032775973 0.785939529294648 -0.818050522227714 1928.77670288086 1261.95549690526 0.654277654339344 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779011_at SPCC24B10.19c.S1 --- 3.98907454801859 --- --- --- --- 12.7463283538818 7.57791185379028 3.19530963897705 4.66993522644043 0.24609400331974 0.334473013877869 0.5 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC24B10.19c /DEF=sequence orphan --- --- --- --- --- --- SPCC24B10.19c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.69167848671359 -1.68203703075623 -2.51385418190942 -3.98907454801859 -2.7294443575393 Max fold change at or above threshold 4 3.98907454801859 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774547_at SPAC6G10.05c.S1 --- 3.98865175975431 --- --- --- --- 5.11541271209717 2.0757110118866 2.99410581588745 2.56600975990295 0.466064006090164 0.398925989866257 0.398925989866257 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G10.05c /DEF=TRAPP (predicted) --- --- --- --- --- --- SPAC6G10.05c // |||TRAPP |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.98865175975431 -2.46441469106425 -3.70825879142293 -1.70849429734699 -1.99352815879026 Max fold change at or above threshold 3 3.98865175975431 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774595_at YCL047C.S1 Hypothetical protein 3.98814268401614 102.089042663574 286.943267822266 --- --- --- --- 211.653594970703 97.3754501342773 106.802635192871 362.232940673828 0.00122069998178631 0.00415039015933871 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL047C /GEN=APA1 /DB_XREF=GI:6319802 /SEG=NC_001135:-43661,44437 /DEF=Hypothetical ORF /NOTE=Ycl047cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000552 // YCL047C SGDID:S0000552, Chr III from 44437-43661, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022430 // cdna:Genscan chromosome:SGD1:III:43661:44437:-1 // ensembl // 11 // --- /// YCL047C // cdna:known chromosome:SGD1:III:43661:44437:-1 gene:YCL047C // ensembl // 11 // --- --- No cerevisiae_gene -1.4992575551786 -2.17358271185232 3.98814268401614 -1.981726336513 1.71144241950612 Max fold change at or above threshold 4 3.98814268401614 Max fold change at or above threshold 0.13907530775147 -0.788325074968875 -0.711820726356728 1.36107049357413 194.51615524292 123.224172607319 0.633490685919798 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774866_at SPBC36B7.09.S1 --- 3.98799873844836 --- --- --- --- 0.877666592597961 0.329587817192078 1.59384572505951 1.13492321968079 0.850341975688934 0.919434010982513 0.870360970497131 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC36B7.09 /DEF=RWD domain --- --- --- --- --- --- AY705913 // Schizosaccharomyces pombe Gcn2 (gcn2) mRNA, complete cds. // gb // 10 // --- /// SPBC36B7.09 // ||SPBP18G5.01|RWD domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -3.98799873844836 -2.66292182786135 -2.97251201940547 1.81600363794365 1.29311429790363 Max fold change at or above threshold 0 3.98799873844836 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771985_at SPAC1565.01.S1 --- 3.98700957399223 --- --- --- --- 1.4524519443512 1.1448575258255 1.55598330497742 1.03890430927277 0.919434010982513 0.919434010982513 0.828612983226776 0.79931640625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1565.01 /DEF=hypothetical protein --- --- --- --- --- --- SPAC1565.01 // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.4843890312146 -1.26867484519867 3.98700957399223 1.07128040347832 -1.39806133383729 Max fold change at or above threshold 0 3.98700957399223 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775222_at YBL052C.S1 Histone acetyltransferase catalytic subunit of NuA3 complex that acetylates histone H3, involved in transcriptional silencing; homolog of the mammalian MOZ proto-oncogene; sas3 gcn5 double mutation confers lethality 3.98670396983384 88.6470336914063 282.724334716797 SAS3 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 16568 // chromatin modification // inferred from mutant phenotype /// 30466 // chromatin silencing at silent mating-type cassette // inferred from mutant phenotype 123 // histone acetyltransferase complex // inferred from physical interaction /// 788 // nuclear nucleosome // traceable author statement 4402 // histone acetyltransferase activity // traceable author statement /// 16407 // acetyltransferase activity // inferred from direct assay 268.171997070313 110.027473449707 67.2665939331055 297.276672363281 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL052C /GEN=SAS3 /DB_XREF=GI:6319419 /SEG=NC_001134:-119344,121839 /DEF=SAS3 for Something about silencing, gene 3. Influences silencing at HMR. /NOTE=Sas3p; go_component: nuclear nucleosome [goid GO:0000788] [evidence TAS] [pmid 12077334]; go_function: acetyltransferase activity [goid GO:0016407] [evidence IDA] [pmid 11731479]; go_process: chromatin modification [goid GO:0016568] [evidence IMP] [pmid 11731478]; go_process: chromatin silencing at silent mating-type cassette (sensu Fungi) [goid GO:0030466] [evidence IMP] [pmid 11731479]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 11731479] --- --- --- --- --- --- S0000148 // SAS3 SGDID:S0000148, Chr II from 121877-119382, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000022380 // cdna:GeneFinder chromosome:SGD1:II:119382:121877:-1 // ensembl // 10 // --- /// YBL052C // cdna:known chromosome:SGD1:II:119382:121877:-1 gene:YBL052C // ensembl // 10 // --- GENSCAN00000021097 // ensembl // 6 // Cross Hyb Matching Probes /// YBL053W // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene -1.92475050958207 -2.43731850475411 1.28991858853412 -3.98670396983384 1.10852988235508 Max fold change at or above threshold 4 3.98670396983384 Max fold change at or above threshold 0.72341770683262 -0.66353419646453 -1.03855371579035 0.978670205422264 185.685684204102 114.023076968029 0.614064985444422 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774262_at SPBC3H7.08c.S1 --- 3.98462737095871 --- --- --- --- 1.36643207073212 2.39838409423828 3.09359407424927 4.54017210006714 0.567627012729645 0.5 0.5 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3H7.08c /DEF=sequence orphan --- --- --- --- --- --- SPBC3H7.08c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 2.12858475530085 1.75521648357774 -3.98462737095871 2.26399404735265 3.32264749731362 Max fold change at or above threshold 2 3.98462737095871 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774709_at YPL167C.S1 Subunit of DNA polymerase zeta, which is involved in DNA repair; required for mutagenesis induced by DNA damage 3.9840724091281 86.2317810058594 302.155776977539 REV3 6280 // mutagenesis // traceable author statement /// 6281 // DNA repair // traceable author statement 16035 // zeta DNA polymerase complex // inferred from direct assay 3894 // zeta DNA polymerase activity // inferred from direct assay 273.617370605469 100.150077819824 72.3134841918945 330.694183349609 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL167C /GEN=REV3 /DB_XREF=GI:6325090 /SEG=NC_001148:-232592,237106 /DEF=DNA polymerase zeta, which is unique in its ability to bypass thymine dimers during replication, is composed of Rev3p and Rev7p. /NOTE=Rev3p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 9745046]; go_function: zeta DNA polymerase activity [goid GO:0003894] [evidence TAS] [pmid 9745046]; go_process: DNA repair [goid GO:0006281] [evidence TAS] [pmid 9745046]; go_process: mutagenesis [goid GO:0006280] [evidence TAS] [pmid 9745046] --- --- --- --- --- --- S0006088 // REV3 SGDID:S0006088, Chr XVI from 237106-232592, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017061 // cdna:Genscan chromosome:SGD1:XVI:232592:237106:-1 // ensembl // 10 // --- /// GENEFINDER00000020888 // cdna:GeneFinder chromosome:SGD1:XVI:232592:237106:-1 // ensembl // 10 // --- /// YPL167C // cdna:known chromosome:SGD1:XVI:232592:237106:-1 gene:YPL167C // ensembl // 10 // --- --- No cerevisiae_gene -3.9840724091281 -2.73207346975528 1.27824308429254 -3.7837669372891 1.2086008377971 Max fold change at or above threshold 4 3.9840724091281 Max fold change at or above threshold 0.623757294838741 -0.738577083303568 -0.957193214683259 1.07201300314809 194.193778991699 127.330922252866 0.655690017023195 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770224_at SPAC16.05c.S1 --- 3.98297711229172 --- --- --- --- 5.5831503868103 2.35974311828613 6.57927513122559 1.40175306797028 0.194580003619194 0.219482004642487 0.0952147990465164 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16.05c /DEF=transcription factor (predicted) --- --- --- --- --- --- SPAC16.05c // |||transcription factor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.80970284229003 -2.36599922404491 1.11594841961735 1.17841624806821 -3.98297711229172 Max fold change at or above threshold 2 3.98297711229172 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774890_at SPBC1604.16c.S1 --- 3.98182144551665 --- --- --- --- 2.10490369796753 2.80829238891602 5.50840044021606 1.38191044330597 0.567627012729645 0.557861328125 0.5 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1604.16c /DEF=hypothetical protein --- --- --- --- --- --- SPBC1604.16c // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.67148991418045 1.33416668497835 -3.98182144551665 2.61693703400061 -1.52318387067973 Max fold change at or above threshold 2 3.98182144551665 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775909_at SPAC22A12.14c.S1 --- 3.98132285550089 --- --- --- --- 0.347553312778473 0.199670881032944 1.38372194766998 0.252459943294525 0.828612983226776 0.919434010982513 0.805419981479645 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22A12.14c /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPAC22A12.14c // |||BSD domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.32081873363037 -1.74063093717271 1.33498005565791 3.98132285550089 -1.37666715853219 Max fold change at or above threshold 0 3.98132285550089 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776074_at SPAC22G7.07c.S1 --- 3.98030834263004 --- --- --- --- 1.63115918636322 6.49251651763916 0.456100583076477 3.9401068687439 0.533936023712158 0.0805663987994194 0.828612983226776 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22G7.07c /DEF=adenosine-methyltransferase S-adenosylmethionine-binding subunit --- --- --- --- --- --- SPAC22G7.07c // |||adenosine-methyltransferase S-adenosylmethionine-binding subunit|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.39146154523573 3.98030834263004 2.73814745210443 -3.57631462639396 2.41552565910421 Max fold change at or above threshold 2 3.98030834263004 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779351_at YNL165W.S1 Hypothetical protein 3.98016602897373 188.560111999512 685.405029296875 --- --- --- --- 674.188842773438 169.387115478516 207.733108520508 696.621215820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL165W /GEN=BNI5 /DB_XREF=GI:6324164 /SEG=NC_001146:+323832,325052 /DEF=Hypothetical ORF /NOTE=Ynl165wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005109 // YNL165W SGDID:S0005109, Chr XIV from 323832-325052, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019907 // cdna:Genscan chromosome:SGD1:XIV:323832:325052:1 // ensembl // 11 // --- /// GENEFINDER00000020552 // cdna:GeneFinder chromosome:SGD1:XIV:323832:325052:1 // ensembl // 11 // --- /// YNL165W // cdna:known chromosome:SGD1:XIV:323832:325052:1 gene:YNL165W // ensembl // 11 // --- --- No cerevisiae_gene -1.98316041431622 -3.98016602897373 -1.01982950261718 -3.24545686325625 1.03327313005447 Max fold change at or above threshold 4 3.98016602897373 Max fold change at or above threshold 0.825276766830597 -0.9310053654247 -0.79759381236975 0.903322410963852 436.982570648193 287.426329758699 0.657752388916446 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775153_at SPCC1919.02.S1 --- 3.9799033051481 --- --- --- --- 7.87182950973511 11.9336023330688 8.40560436248779 4.77175760269165 0.432372987270355 0.366210997104645 0.129638999700546 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1919.02 /DEF=protease B (predicted) --- --- --- --- --- --- SPCC1919.02 // |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -3.9799033051481 1.51598841391452 -1.86765204999767 1.06780823340909 -1.64967086871612 Max fold change at or above threshold 4 3.9799033051481 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771901_at YKL205W.S1 Nuclear pore protein involved in nuclear export of pre-tRNA 3.97741835125429 113.460205078125 418.19416809082 LOS1 6388 // tRNA splicing // inferred from mutant phenotype /// 6409 // tRNA-nucleus export // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 16363 // nuclear matrix // inferred from direct assay 49 // tRNA binding // traceable author statement /// 8536 // Ran GTPase binding // inferred from direct assay 372.206634521484 133.340454101563 93.5799560546875 464.181701660156 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL205W /GEN=LOS1 /DB_XREF=GI:6322644 /SEG=NC_001143:+50052,53354 /DEF=Nuclear pore protein involved in pre-tRNA splicing /NOTE=Los1p; go_component: nuclear matrix [goid GO:0016363] [evidence IDA] [pmid 8366091]; go_function: RAN protein binding [goid GO:0008536] [evidence IDA] [pmid 9774653]; go_function: tRNA binding [goid GO:0000049] [evidence TAS] [pmid 11959996]; go_process: tRNA splicing [goid GO:0006388] [evidence IMP] [pmid 8366091]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence IMP] [pmid 9802895] --- --- --- --- --- --- S0001688 // LOS1 SGDID:S0001688, Chr XI from 50052-53354, Verified ORF // sgd // 11 // --- /// GENSCAN00000018265 // cdna:Genscan chromosome:SGD1:XI:50052:53354:1 // ensembl // 11 // --- /// GENEFINDER00000023066 // cdna:GeneFinder chromosome:SGD1:XI:50895:53437:1 // ensembl // 11 // --- /// YKL205W // cdna:known chromosome:SGD1:XI:50052:53354:1 gene:YKL205W // ensembl // 11 // --- --- No cerevisiae_gene 1.0710515594393 -2.79140068203145 -1.37001364344749 -3.97741835125429 1.24710754352059 Max fold change at or above threshold 4 3.97741835125429 Max fold change at or above threshold 0.588931589037888 -0.733465189007162 -0.953584899625974 1.09811849959525 265.827186584473 180.631248038162 0.679506300160772 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780204_at SPBC31E1.02c.S1 --- 3.97682995369841 --- --- --- --- 2.25423955917358 8.9647274017334 1.93672108650208 0.781549155712128 0.432372987270355 0.0952147990465164 0.466064006090164 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31E1.02c /GEN=pmr1 /DEF=ATPase (PMID 12707717) --- --- --- --- --- --- SPBC31E1.02c // |pmr1||ATPase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.34958073884137 3.97682995369841 -2.49436533244463 -1.16394641173912 -2.88432217308146 Max fold change at or above threshold 1 3.97682995369841 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778591_at YNR044W.S1 Anchorage subunit of a-agglutinin of a-cells, highly O-glycosylated protein with N-terminal secretion signal and C-terminal signal for addition of GPI anchor to cell wall, linked to adhesion subunit Aga2p via two disulfide bonds 3.97637836421055 82.7815475463867 290.879455566406 AGA1 752 // agglutination during conjugation with cellular fusion // inferred from mutant phenotype 9277 // cell wall (sensu Fungi) // inferred from direct assay 50839 // cell adhesion molecule binding // inferred from mutant phenotype /// 50839 // cell adhesion molecule binding // inferred from sequence similarity /// 50839 // cell adhesion molecule binding // traceable author statement 292.025024414063 73.4399490356445 92.1231460571289 289.73388671875 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR044W /GEN=AGA1 /DB_XREF=GI:6324372 /SEG=NC_001146:+703698,705875 /DEF=Anchorage subunit of a-agglutinin of a-cells, highly O-glycosylated protein with N-terminal secretion signal and C-terminal signal for addition of GPI anchor to cell wall, linked to adhesion subunit Aga2p via two disulfide bonds /NOTE=Aga1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 7957044]; go_function: cell adhesion molecule binding [goid GO:0050839] [evidence TAS] [pmid 11292808]; go_function: cell adhesion molecule binding [goid GO:0050839] [evidence IMP,ISS] [pmid 7957044]; go_process: agglutination during conjugation with cellular fusion [goid GO:0000752] [evidence IMP] [pmid 7957044] --- --- --- --- --- --- S0005327 // AGA1 SGDID:S0005327, Chr XIV from 703699-705876, Verified ORF // sgd // 11 // --- /// GENSCAN00000020071 // cdna:Genscan chromosome:SGD1:XIV:703699:705876:1 // ensembl // 11 // --- /// YNR044W // cdna:known chromosome:SGD1:XIV:703699:705876:1 gene:YNR044W // ensembl // 11 // --- GENEFINDER00000020549 // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene -2.56442820090202 -3.97637836421055 -1.447750999699 -3.16994194089906 -1.00790773119865 Max fold change at or above threshold 4 3.97637836421055 Max fold change at or above threshold 0.873774818313838 -0.941853308858898 -0.786665504023682 0.854743994568742 186.830501556396 120.390884073158 0.644385595875612 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777050_at SPAPB24D3.10c.S1 --- 3.97615850540343 --- --- --- --- 5.91446685791016 6.40892171859741 1.4874826669693 1.9018337726593 0.525634765625 0.5 0.696289002895355 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB24D3.10c /GEN=agl1 /DEF=alpha-glucosidase --- --- --- --- --- --- AB045751 // Schizosaccharomyces pombe agl mRNA for alpha-glucosidase, complete cds. // gb // 11 // --- /// SPAPB24D3.10c // |agl1|agl|alpha-glucosidase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.87365178141683 1.08360091831878 -2.31903237913971 -3.97615850540343 -3.10987581719093 Max fold change at or above threshold 2 3.97615850540343 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777454_at SPBC2D10.03c.S1 --- 3.97510885408906 --- --- --- --- 3.44734477996826 8.43127059936523 3.68898391723633 3.50265717506409 0.398925989866257 0.219482004642487 0.334473013877869 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2D10.03c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC2D10.03c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.97510885408906 2.44572885438017 -2.93812671006363 1.07009427623027 1.01604492692963 Max fold change at or above threshold 4 3.97510885408906 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771873_at SPAC23H3.13c.S1 --- 3.97471763004691 --- --- --- --- 4.61334657669067 2.81692576408386 1.16067278385162 5.32298040390015 0.274170011281967 0.633789002895355 0.567627012729645 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H3.13c /GEN=gpa2 /DEF=heterotrimeric G protein (alpha-2 subunit) (PMID 1340462) --- --- --- --- --- --- SPAC23H3.13c // |gpa2|git8|heterotrimeric G protein alpha-2 subunit Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.3396516744662 -1.63772387455551 -1.04825654246896 -3.97471763004691 1.15382191981737 Max fold change at or above threshold 3 3.97471763004691 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775459_at YEL022W.S1 Guanine nucleotide exchange factor for ADP ribosylation factors (ARFs), involved in vesicular transport between the Golgi and ER, Golgi organization, and actin cytoskeleton organization; similar to but not functionally redundant with Gea1p 3.97201576581268 144.922492980957 591.444381713867 GEA2 6888 // ER to Golgi transport // traceable author statement /// 6890 // retrograde transport, Golgi to ER // inferred from genetic interaction /// 6891 // intra-Golgi transport // traceable author statement /// 30036 // actin cytoskeleton organization and biogenesis // inferred from genetic interaction 137 // Golgi cis cisterna // inferred from direct assay /// 5798 // Golgi vesicle // traceable author statement 5086 // ARF guanyl-nucleotide exchange factor activity // traceable author statement 509.243682861328 128.207870483398 161.637115478516 673.645080566406 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL022W /GEN=GEA2 /DB_XREF=GI:6320813 /SEG=NC_001137:+111421,115800 /DEF=Guanine-nucleotide Exchange on ARF /NOTE=Gea2p; go_component: Golgi vesicle [goid GO:0005798] [evidence TAS] [pmid 8945477]; go_function: ARF guanyl-nucleotide exchange factor activity [goid GO:0005086] [evidence TAS] [pmid 8945477]; go_process: ER to Golgi transport [goid GO:0006888] [evidence TAS] [pmid 8945477]; go_process: intra-Golgi transport [goid GO:0006891] [evidence TAS] [pmid 8945477] --- --- --- --- --- --- S0000748 // GEA2 SGDID:S0000748, Chr V from 111421-115800, Verified ORF // sgd // 11 // --- /// GENSCAN00000016785 // cdna:Genscan chromosome:SGD1:V:111421:115800:1 // ensembl // 11 // --- /// YEL022W // cdna:known chromosome:SGD1:V:111421:115800:1 gene:YEL022W // ensembl // 11 // --- GENEFINDER00000019673 // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene 1.06873674596302 -3.97201576581268 -1.00803460551545 -3.15053681423197 1.32283443710356 Max fold change at or above threshold 4 3.97201576581268 Max fold change at or above threshold 0.52882580819717 -0.899653000263043 -0.77432890602545 1.14515609809132 368.183437347412 266.742362659658 0.724482243365998 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-TrpnX-5_at AFFX-TrpnX-5 --- 3.9717680873001 --- --- --- --- 3.84614729881287 1.96475279331207 0.968371570110321 2.81490063667297 0.603089272975922 0.440646350383759 0.603080451488495 0.313723027706146 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=trpE, trpD /DB_XREF=gb:K01391.1 /NOTE=SIF corresponding to nucleotides 1953-2483 of gb:K01391.1, not 100% identical /DEF=B.subtilis tryptophan (trp) operon, complete cds. --- --- --- --- --- --- AFFX-TrpnX-5 // --- // gb // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-TrpnX-5 // B. subtilis /GEN=trpE, trpD /DB_XREF=gb:K01391.1 /NOTE=SIF corresponding to nucleotides 1953-2483 of gb:K01391.1, not 100% identical /DEF=B.subtilis tryptophan (trp) operon, complete cds. // affx // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// K01391 // Bacillus subtilis /REF=K01391 /DEF=B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 /LEN=2609 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-TrpnX-5 // --- // unknown // --- // --- /// AFFX-TrpnX-5 // --- // unknown // --- // --- /// AFFX-TrpnX-5 // --- // unknown // --- // --- /// AFFX-TrpnX-5 // --- // unknown // --- // --- /// AFFX-TrpnX-5 // B. subtilis /GEN=trpE, trpD /DB_XREF=gb:K01391.1 /NOTE=SIF corresponding to nucleotides 1953-2483 of gb:K01391.1, not 100% identical /DEF=B.subtilis tryptophan (trp) operon, complete cds. // affx // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-TrpnX-5 // --- // unknown // --- // --- /// AFFX-TrpnX-5 // --- // affx // --- // --- /// AFFX-TrpnX-5 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-TrpnX-5 // --- // affx // --- // --- /// AFFX-TrpnX-5 // --- // affx // --- // --- /// AFFX-TrpnX-5 // --- // affx // --- // --- /// AFFX-TrpnX-5 // --- // affx // --- // --- /// AFFX-TrpnX-5 // --- // affx // --- // --- /// AFFX-TrpnX-5 // --- // affx // --- // --- /// AFFX-TrpnX-5 // --- // affx // --- // --- /// AFFX-TrpnX-5 // --- // affx // --- // --- /// AFFX-TrpnX-5 // --- // affx // --- // --- /// AFFX-TrpnX-5 // --- // affx // --- // --- /// AFFX-TrpnX-5 // --- // affx // --- // --- 939008 // gb // 8 // Cross Hyb Matching Probes /// 50812173 // gb // 19 // Negative Strand Matching Probes /// NM_214698 // refseq // 1 // Negative Strand Matching Probes AFFX_control No 1.19754950296961 -1.95757314197744 -3.1921915934995 -3.9717680873001 -1.36635277590429 Max fold change at or above threshold 2 3.9717680873001 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775088_at SPAC19D5.03.S1 --- 3.97140184339899 --- --- --- --- 4.21159553527832 13.3097715377808 5.58554697036743 5.9560980796814 0.366210997104645 0.24609400331974 0.303710997104645 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19D5.03 /GEN=cid1 /DEF=nucleotidyltransferase --- --- --- --- --- --- AF105076 // Schizosaccharomyces pombe caffeine-induced death protein 1 (cid1) mRNA, complete cds. // gb // 11 // --- /// SPAC19D5.03 // |cid1||nucleotidyltransferase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.97140184339899 3.16026822288413 -2.14743731727035 1.32623062295043 1.41421416890352 Max fold change at or above threshold 4 3.97140184339899 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770729_at SPCC1672.07.S1 --- 3.97040083367662 --- --- --- --- 3.34762001037598 12.6474590301514 13.2913932800293 4.20230627059937 0.24609400331974 0.0561522990465164 0.00585938012227416 0.149657994508743 A M P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1672.07 /DEF=WD repeat protein --- --- --- --- --- --- SPCC1672.07 // |||WD repeat protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.45386190778165 3.77804499643044 -1.00807215247755 3.97040083367662 1.25531161170452 Max fold change at or above threshold 4 3.97040083367662 Max fold change at or above threshold APMAPA No 4 0 AMPA 2 1 1 No No x = 1
1774788_at SPBP16F5.06.S1 --- 3.96910404118901 --- --- --- --- 6.31015872955322 1.58981943130493 5.19097423553467 6.03660726547241 0.466064006090164 0.696289002895355 0.533936023712158 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP16F5.06 /DEF=localization nucleolus (predicted) --- --- --- --- --- --- SPBP16F5.06 // |||rrm RNA recognition motif|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.1741103773185 -3.96910404118901 1.06090742473455 -1.2156020128856 -1.04531543167392 Max fold change at or above threshold 3 3.96910404118901 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770516_at SPAC22G7.09c.S1 --- 3.96665461121914 --- --- --- --- 1.13062989711761 3.55694460868835 0.500222325325012 0.285033613443375 0.781005859375 0.633789002895355 0.981445014476776 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22G7.09c /GEN=nup45 /DEF=nucleoporin --- --- --- --- --- --- SPAC22G7.09c // |nup45||nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.4589302382615 3.14598492199463 -2.48318210552622 -2.26025477048231 -3.96665461121914 Max fold change at or above threshold 1 3.96665461121914 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779666_at SPBC2G2.02.S1 --- 3.96342120852752 --- --- --- --- 7.65814590454102 8.53783226013184 10.4077634811401 7.48622035980225 0.432372987270355 0.696289002895355 0.533936023712158 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G2.02 /DEF=phosphatidylinositol phosphate phosphatase --- --- --- --- --- --- SPBC2G2.02 // |||inositol polyphosphate phosphatase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.96342120852752 1.11486936479876 -1.04008744344872 1.35904481461612 -1.02296560032643 Max fold change at or above threshold 4 3.96342120852752 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778272_at YGR121W-A.S1 Identified by fungal homology and RT-PCR 3.96304865433578 163.99467086792 66.4815044403076 --- --- --- --- 58.9252738952637 207.864196777344 120.125144958496 74.0377349853516 0.000244140625 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR121W-A /GEN=MEP1 /DB_XREF=GI:33438796 /SEG=NC_001139:+733415,733630 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ygr121w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028550 // YGR121W-A SGDID:S0028550, Chr VII from 733417-733632, Uncharacterized ORF // sgd // 10 // --- /// YGR121W-A // cdna:known chromosome:SGD1:VII:733417:733632:1 gene:YGR121W-A // ensembl // 10 // --- --- No cerevisiae_gene 3.96304865433578 3.52758982752987 -1.12071005865643 2.03860138473029 1.25646823665087 Max fold change at or above threshold 4 3.96304865433578 Max fold change at or above threshold -0.840331232367556 1.38221849048882 0.0729273963263299 -0.614814654447589 115.238087654114 67.0126392900975 0.581514676738088 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777214_at YNL162W-A.S1 Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 3.95958235937858 29.4881029129028 51.2366924285889 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 41.5122184753418 42.7106437683105 16.2655620574951 60.9611663818359 0.000244141003349796 0.018554700538516 0.0375977009534836 0.0107421996071935 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL162W-A /GEN=RIA1 /DB_XREF=GI:13129184 /SEG=NC_001146:+330329,330547 /DEF=Hypothetical ORF identified by homology. See FEBS Letters [2000] 487:31-36. /NOTE=Ynl162w-ap; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007624 // YNL162W-A SGDID:S0007624, Chr XIV from 330329-330547, Uncharacterized ORF // sgd // 11 // --- /// YNL162W-A // cdna:known chromosome:SGD1:XIV:330329:330547:1 gene:YNL162W-A // ensembl // 11 // --- --- No cerevisiae_gene 3.95958235937858 1.0288692181961 -1.34045649047977 -2.5521539513117 1.46851140750396 Max fold change at or above threshold 4 3.95958235937858 Max fold change at or above threshold 0.0626098676169017 0.127866339444168 -1.3121172287903 1.12164102172923 40.3623976707459 18.3648496373046 0.454998976698929 PPPPPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1778540_at SPBP4H10.06c.S1 --- 3.95765176810001 --- --- --- --- 6.76953363418579 2.74779915809631 2.37231397628784 1.71049249172211 0.0375977009534836 0.466064006090164 0.567627012729645 0.42333984375 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP4H10.06c /GEN=cut14 /DEF=condensin subunit --- --- --- --- --- --- SPBP4H10.06c // |cut14|smc2|condensin subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.39039275928624 -2.46362024467456 -1.33538612994145 -2.8535572027353 -3.95765176810001 Max fold change at or above threshold 2 3.95765176810001 Max fold change at or above threshold PMAAAA No 4 0 PAAA 3 1 0 No No x = 1
1771430_at SPAC1952.05.S1 --- 3.95679055243835 --- --- --- --- 1.4049791097641 0.355080485343933 1.69371747970581 1.39561200141907 0.665526986122131 0.919434010982513 0.601073980331421 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1952.05 /GEN=gcn5 /DEF=histone acetyltransferase (PMID 14988732) --- --- --- --- --- --- SPAC1952.05 // |gcn5||histone acetyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.1340733299909 -3.95679055243835 3.52736657503395 1.20551079224957 -1.00671182845627 Max fold change at or above threshold 0 3.95679055243835 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769661_at SPAC12G12.08.S1 --- 3.95600976283131 --- --- --- --- 1.40572440624237 0.955974996089935 1.19178104400635 1.47295224666595 0.567627012729645 0.746337890625 0.5 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12G12.08 /GEN=mrpl6 /DEF=mitochondrial ribosomal protein subunit YmL16 --- --- --- --- --- --- SPAC12G12.08 // |mrpl6||mitochondrial ribosomal protein subunit L16|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 2.80840184900515 -1.47046147858675 3.95600976283131 -1.179515661297 1.04782433891383 Max fold change at or above threshold 0 3.95600976283131 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776492_at SPAC20G8.08c.S1 --- 3.95579064202921 --- --- --- --- 3.01397657394409 0.76191508769989 2.54999184608459 1.95274770259857 0.5 0.943848013877869 0.533936023712158 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20G8.08c /DEF=SNF2 family --- --- --- --- --- --- SPAC20G8.08c // |||SNF2 family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.07169634795114 -3.95579064202921 1.94055515730923 -1.18195537706206 -1.54345416457708 Max fold change at or above threshold 2 3.95579064202921 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780216_at SPBC354.03.S1 --- 3.95455881487913 --- --- --- --- 2.58463048934937 7.31389188766479 5.25691366195679 3.07947754859924 0.24609400331974 0.24609400331974 0.274170011281967 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC354.03 /GEN=swd3 /DEF=SET1 complex (TAP) (PMID 12488447) --- --- --- --- --- --- SPBC354.03 // |swd3||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.93047905034529 2.82976306199419 -3.95455881487913 2.03391304235528 1.19145756474244 Max fold change at or above threshold 4 3.95455881487913 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776973_at SPCC794.09c.S1 --- 3.95344504481867 --- --- --- --- 1.46116852760315 4.98443698883057 1.41499257087708 5.77664947509766 0.704590022563934 0.558104991912842 0.87304699420929 0.441895008087158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC794.09c /GEN=ef1a-a /DEF=translation elongation factor 1 (alpha 1 subunit) (PMID 9099890) --- --- --- --- --- --- D89112 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0373. // gb // 10 // --- /// D82571 // Schizosaccharomyces pombe mRNA for elongation factor 1 alpha-A, complete cds. // gb // 10 // --- /// SPCC794.09c // |ef1a-a||translational elongation factor EF-1 alpha |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -2.53176382815063 3.41126769066595 -1.03716646362788 -1.03263335629914 3.95344504481867 Max fold change at or above threshold 2 3.95344504481867 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778140_x_at SPCC830.02.S1 --- 3.95333660668066 --- --- --- --- 2.03338217735291 2.00482678413391 2.5883572101593 2.64800572395325 0.805419981479645 0.567627012729645 0.0805663987994194 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC830.02 /GEN=wtf24 /DEF=wtf element --- --- --- --- --- --- SPCC830.02 // |wtf24||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.38060822497561 -1.01424332188944 -3.95333660668066 1.27293198444813 1.30226661443471 Max fold change at or above threshold 2 3.95333660668066 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777083_at YLR443W.S1 Non-essential protein of unknown function 3.95012170452683 117.398418426514 401.755950927734 ECM7 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 16021 // integral to membrane // inferred from sequence similarity --- 371.573120117188 94.0662460327148 140.730590820313 431.938781738281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR443W /GEN=ECM7 /DB_XREF=GI:6323476 /SEG=NC_001144:+1022621,1023967 /DEF=Non-essential protein of unknown function /NOTE=Ecm7p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 12524434]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584] --- --- --- --- --- S0004435 // span:26-48,205-227,248-270,290-312 // numtm:4 S0004435 // ECM7 SGDID:S0004435, Chr XII from 1022621-1023967, Verified ORF // sgd // 11 // --- /// GENSCAN00000018158 // cdna:Genscan chromosome:SGD1:XII:1022627:1023967:1 // ensembl // 11 // --- /// GENEFINDER00000024757 // cdna:GeneFinder chromosome:SGD1:XII:1023002:1023967:1 // ensembl // 11 // --- /// YLR443W // cdna:known chromosome:SGD1:XII:1022621:1023967:1 gene:YLR443W // ensembl // 11 // --- YLR444C // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene -1.95077726142821 -3.95012170452683 -1.37233490869347 -2.64031521470424 1.16245971076179 Max fold change at or above threshold 4 3.95012170452683 Max fold change at or above threshold 0.670221952010889 -0.990474019807405 -0.7112186331725 1.03147070096902 259.577184677124 167.102756190003 0.643749782546777 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772085_at SPCC1739.03.S1 --- 3.94939862565612 --- --- --- --- 1.03963696956635 0.586430907249451 0.579372107982636 0.382870137691498 0.850341975688934 0.932372987270355 0.904784977436066 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1739.03 /DEF=DEADDEAH box helicase (predicted) --- --- --- --- --- --- SPCC1739.03 // |hrr1||Helicase Required for RNAi-mediated heterochromatin assembly Hrr1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -1.72536830057957 -1.77282090134467 3.94939862565612 -1.79442012351327 -2.71537753201334 Max fold change at or above threshold 0 3.94939862565612 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778763_at SPAC6F6.06c.S1 --- 3.94699525533066 --- --- --- --- 4.02095746994019 2.3108971118927 7.84504795074463 1.09645104408264 0.5 0.850341975688934 0.366210997104645 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F6.06c /DEF=involved in cell polarity (predicted) --- --- --- --- --- --- SPAC6F6.06c // |||plasma membrane protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.0493436950627 -1.73999848337986 -3.94699525533066 1.95103977333571 -3.66724760913002 Max fold change at or above threshold 2 3.94699525533066 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776772_at YMR251W.S1 Omega class glutathione transferase 3.94670380011401 58.2326307296753 117.455177307129 --- --- --- --- 114.821334838867 29.0929698944092 87.3722915649414 120.089019775391 0.00195312988944352 0.018554700538516 0.00195312988944352 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR251W /GEN=GAD1 /DB_XREF=GI:6323906 /SEG=NC_001145:+772914,774014 /DEF=Hypothetical ORF /NOTE=Ymr251wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004863 // YMR251W SGDID:S0004863, Chr XIII from 772914-774014, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018926 // cdna:Genscan chromosome:SGD1:XIII:772914:774014:1 // ensembl // 11 // --- /// GENEFINDER00000021957 // cdna:GeneFinder chromosome:SGD1:XIII:772914:774014:1 // ensembl // 11 // --- /// YMR251W // cdna:known chromosome:SGD1:XIII:772914:774014:1 gene:YMR251W // ensembl // 11 // --- --- No cerevisiae_gene 1.65778237700784 -3.94670380011401 -1.28319023286322 -1.31416187880941 1.04587723129953 Max fold change at or above threshold 4 3.94670380011401 Max fold change at or above threshold 0.646770090746232 -1.40852356355503 -0.0113066670933851 0.773060139902184 87.8439040184021 41.7110055125446 0.474830962701825 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1771653_at SPBC25B2.01.S1 --- 3.94539910921447 --- --- --- --- 5.93210315704346 1.50354957580566 3.82871389389038 5.680006980896 0.111571997404099 0.747314453125 0.219482004642487 0.018554700538516 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25B2.01 /DEF=GTP binding (predicted) --- --- --- --- --- --- SPBC25B2.01 // ||SPBC2G5.08|GTP binding |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.19112594785806 -3.94539910921447 -1.03715977542932 -1.54937227524614 -1.04438307505525 Max fold change at or above threshold 3 3.94539910921447 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1775454_at YDL051W.S1 RNA binding protein required for maturation of tRNA and snRNA precursors; acts as a molecular chaperone for RNAs transcribed by polymerase III; homologous to human La (SS-B) autoantigen 3.94155702062 534.845916748047 472.261581420898 LHP1 8033 // tRNA processing // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5654 // nucleoplasm // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay 3723 // RNA binding // inferred from direct assay 429.680633544922 505.367797851563 564.324035644531 514.842529296875 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL051W /GEN=LHP1 /DB_XREF=GI:6320152 /SEG=NC_001136:+363952,364779 /DEF=Protein homologous to human La (SS-B) autoantigen /NOTE=Lhp1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11720288]; go_component: nucleoplasm [goid GO:0005654] [evidence IDA] [pmid 11720288]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10564276]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 7799435]; go_process: tRNA processing [goid GO:0008033] [evidence IMP] [pmid 9150139] --- --- --- --- --- --- S0002209 // LHP1 SGDID:S0002209, Chr IV from 363952-364779, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023785 // cdna:GeneFinder chromosome:SGD1:IV:363952:364779:1 // ensembl // 11 // --- /// GENSCAN00000025062 // cdna:Genscan chromosome:SGD1:IV:363952:364779:1 // ensembl // 11 // --- /// YDL051W // cdna:known chromosome:SGD1:IV:363952:364779:1 gene:YDL051W // ensembl // 11 // --- YDL050C // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene 3.94155702062 1.17614748815233 1.26644552203427 1.31335692509291 1.19819812461492 Max fold change at or above threshold 4 3.94155702062 Max fold change at or above threshold -1.32815829057647 0.0326146243044326 1.09258367304458 0.202959993227448 503.553749084473 55.6207163435974 0.110456364280324 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776257_at YGR250C.S1 Hypothetical protein 3.94135401287902 6743.08911132813 2067.00317382813 --- --- 5737 // cytoplasm // inferred from direct assay 3723 // RNA binding // inferred from sequence similarity 2079.97900390625 8197.93359375 5288.24462890625 2054.02734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR250C /GEN=MGA1 /DB_XREF=GI:6321689 /SEG=NC_001139:-991180,993525 /DEF=Hypothetical ORF /NOTE=Ygr250cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 9133742]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003482 // YGR250C SGDID:S0003482, Chr VII from 993526-991181, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019532 // cdna:Genscan chromosome:SGD1:VII:991181:993526:-1 // ensembl // 11 // --- /// GENEFINDER00000021513 // cdna:GeneFinder chromosome:SGD1:VII:991181:993526:-1 // ensembl // 11 // --- /// YGR250C // cdna:known chromosome:SGD1:VII:991181:993526:-1 gene:YGR250C // ensembl // 11 // --- --- No cerevisiae_gene -1.48508732189215 3.94135401287902 -1.13091705549324 2.54245096656014 -1.01263452516113 Max fold change at or above threshold 4 3.94135401287902 Max fold change at or above threshold -0.788282739300608 1.2859274728628 0.29943656704321 -0.797081300605402 4405.04614257813 2949.53450425003 0.669580841785182 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777408_at SPAC1F5.05c.S1 --- 3.94040893797799 --- --- --- --- 7.30816078186035 8.89134120941162 7.84607458114624 1.85467064380646 0.432372987270355 0.533936023712158 0.366210997104645 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F5.05c /DEF=sequence orphan --- --- --- --- --- --- SPAC1F5.05c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.81128287430783 1.21663185510107 -3.16699403220426 1.07360453817889 -3.94040893797799 Max fold change at or above threshold 3 3.94040893797799 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770496_at SPCC1739.02c.S1 --- 3.93872216990665 --- --- --- --- 7.0418848991394 8.25910568237305 1.78786027431488 4.15195035934448 0.432372987270355 0.5 0.696289002895355 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1739.02c /DEF=mitochondrial ribosomal protein (predicted) --- --- --- --- --- --- SPCC1739.02c // |mrpl22||mitochondrial ribosomal protein subunit L22|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.18585204683427 1.17285439916554 -2.61306735124479 -3.93872216990665 -1.69604265216966 Max fold change at or above threshold 3 3.93872216990665 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770743_at YNL233W.S1 Targeting subunit for Glc7p protein phosphatase, localized to the bud neck, required for localization of chitin synthase III to the bud neck via interaction with the chitin synthase III regulatory subunit Skt5p 3.93843721273076 137.28755569458 524.926742553711 BNI4 917 // barrier septum formation // inferred from genetic interaction /// 6031 // chitin biosynthesis // inferred from genetic interaction /// 6031 // chitin biosynthesis // traceable author statement /// 6031 // chitin biosynthesis // inferred from mutant phenotype 131 // incipient bud site // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 5940 // septin ring // inferred from direct assay /// 5940 // septin ring // inferred from physical interaction 5515 // protein binding // inferred from direct assay 479.877655029297 121.844688415527 152.730422973633 569.975830078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL233W /GEN=BNI4 /DB_XREF=GI:6324096 /SEG=NC_001146:+211921,214599 /DEF=Targeting subunit for Glc7p protein phosphatase, localized to the bud neck, required for localization of chitin synthase III to the bud neck via interaction with the chitin synthase III regulatory subunit Skt5p /NOTE=Bni4p; go_component: contractile ring (sensu Saccharomyces) [goid GO:0000142] [evidence IDA] [pmid 10652251]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 12529424]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251] --- --- --- --- --- --- S0005177 // BNI4 SGDID:S0005177, Chr XIV from 211921-214599, Verified ORF // sgd // 11 // --- /// GENSCAN00000019853 // cdna:Genscan chromosome:SGD1:XIV:211921:214599:1 // ensembl // 11 // --- /// GENEFINDER00000020663 // cdna:GeneFinder chromosome:SGD1:XIV:212176:214599:1 // ensembl // 11 // --- /// YNL233W // cdna:known chromosome:SGD1:XIV:211921:214599:1 gene:YNL233W // ensembl // 11 // --- --- No cerevisiae_gene -1.37048439851013 -3.93843721273076 -1.07002525250807 -3.14199126595847 1.18775238668558 Max fold change at or above threshold 4 3.93843721273076 Max fold change at or above threshold 0.654925752124503 -0.921226782399955 -0.78525989291259 1.05156092318804 331.107149124146 227.156292789766 0.686050704101819 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770408_at SPBC1683.12.S1 --- 3.93821140453499 --- --- --- --- 5.1751070022583 4.9606785774231 1.72787916660309 3.13471174240112 0.194580003619194 0.567627012729645 0.780517995357513 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1683.12 /DEF=membrane transporter --- --- --- --- --- --- SPBC1683.12 // |||nicotinic acid plasma membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.93821140453499 -1.04322562356914 1.18167617649189 -2.99506302424623 -1.65090363246423 Max fold change at or above threshold 3 3.93821140453499 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773296_at SPAPB17E12.04c.S1 --- 3.93772565673809 --- --- --- --- 2.90988922119141 0.738977134227753 5.03337144851685 3.68011832237244 0.432372987270355 0.533936023712158 0.398925989866257 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB17E12.04c /GEN=csn2 /DEF=COP9signalosome complex (subunit 2) (PMID 11854407) --- --- --- --- --- --- SPAPB17E12.04c // |csn2||COP9/signalosome complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.37866234861351 -3.93772565673809 1.0270496584995 1.72974675869483 1.26469361636581 Max fold change at or above threshold 3 3.93772565673809 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779284_at YLR067C.S1 Specific translational activator for the COX1 mRNA, also influences stability of intron-containing COX1 primary transcripts; located in the mitochondrial inner membrane 3.93658387533668 77.2161598205566 299.212768554688 PET309 6412 // protein biosynthesis // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from mutant phenotype /// 16070 // RNA metabolism // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay /// 16021 // integral to membrane // inferred from direct assay 45182 // translation regulator activity // inferred from genetic interaction 272.957275390625 85.0937042236328 69.3386154174805 325.46826171875 0.000244141003349796 0.00122069998178631 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR067C /GEN=PET309 /DB_XREF=GI:6323096 /SEG=NC_001144:-267814,270711 /DEF=Specific translational activator for the COX1 mRNA, also influences stability of intron-containing COX1 primary transcripts; located in the mitochondrial inner membrane /NOTE=Pet309p; go_component: integral to membrane [goid GO:0016021] [evidence IDA] [pmid 9692914]; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 9692914]; go_function: translation regulator activity [goid GO:0045182] [evidence IGI] [pmid 7664742]; go_process: RNA metabolism [goid GO:0016070] [evidence IMP] [pmid 7664742]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 7664742]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP] [pmid 7664742] --- --- --- --- --- --- S0004057 // PET309 SGDID:S0004057, Chr XII from 270711-267814, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017869 // cdna:Genscan chromosome:SGD1:XII:267814:270558:-1 // ensembl // 10 // --- /// GENEFINDER00000024835 // cdna:GeneFinder chromosome:SGD1:XII:267814:269019:-1 // ensembl // 10 // --- /// YLR067C // cdna:known chromosome:SGD1:XII:267814:270711:-1 gene:YLR067C // ensembl // 10 // --- --- No cerevisiae_gene -3.43960874836201 -3.20772585799382 1.13781637035758 -3.93658387533668 1.19237804250858 Max fold change at or above threshold 4 3.93658387533668 Max fold change at or above threshold 0.651320054999574 -0.792570108282688 -0.913661268253348 1.05491132153646 188.214464187622 130.10932267863 0.691282273337561 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769704_at SPAC56F8.09.S1 --- 3.93584931680207 --- --- --- --- 6.23975563049316 7.78581237792969 2.50920748710632 1.58536446094513 0.466064006090164 0.432372987270355 0.567627012729645 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC56F8.09 /DEF=methyltransferase activity (predicted) --- --- --- --- --- --- SPAC56F8.09 // |||methyltransferase activity |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.16447828134776 1.24777520771504 -2.94086146682189 -2.48674358838655 -3.93584931680207 Max fold change at or above threshold 3 3.93584931680207 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771709_at SPAC1039.06.S1 --- 3.93467036642005 --- --- --- --- 2.03326606750488 0.982636392116547 1.88924884796143 8.00023174285889 0.5 0.953857004642487 0.725830018520355 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1039.06 /DEF=metal activated pyridoxal enzyme (predicted) --- --- --- --- --- --- SPAC1039.06 // |||alanine racemase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.6743125327009 -2.06919475384515 -1.98704249006378 -1.07622988347928 3.93467036642005 Max fold change at or above threshold 1 3.93467036642005 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770724_at SPAC23C11.08.S1 --- 3.93366871465145 --- --- --- --- 0.844890475273132 0.487430661916733 1.35209667682648 1.68130207061768 0.850341975688934 0.850341975688934 0.828612983226776 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C11.08 /GEN=php3 /DEF=transcription factor --- --- --- --- --- --- X75072 // S.pombe PHP3 mRNA. // gb // 11 // --- /// SPAC23C11.08 // |php3||CCAAT-box binding factor complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.93366871465145 -1.73335520574507 -1.17054305367265 1.60032183625857 1.9899645218206 Max fold change at or above threshold 0 3.93366871465145 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775733_at SPBC4B4.11.S1 --- 3.9323167074864 --- --- --- --- 2.70292115211487 0.687361001968384 3.38921642303467 2.49443078041077 0.533936023712158 0.870360970497131 0.533936023712158 0.390869140625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4B4.11 /DEF=hypothetical protein --- --- --- --- --- --- SPBC4B4.11 // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.71118582347452 -3.9323167074864 1.38302695990332 1.25390872774177 -1.08358234405277 Max fold change at or above threshold 2 3.9323167074864 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769980_at SPBC215.07c.S1 --- 3.93105898896205 --- --- --- --- 0.486138939857483 0.22880882024765 0.197843804955482 0.143104165792465 0.870360970497131 0.870360970497131 0.888427972793579 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC215.07c /DEF=PWWP domain protein --- --- --- --- --- --- SPBC215.07c // |||PWWP domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.13607176312041 -2.12465122337204 -3.93105898896205 -2.45718555588269 -3.39709845038683 Max fold change at or above threshold 0 3.93105898896205 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778411_at SPAC22F8.05.S1 --- 3.93092883077873 --- --- --- --- 2.87486982345581 5.12099170684814 2.32404184341431 0.731346189975739 0.601073980331421 0.567627012729645 0.533936023712158 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F8.05 /DEF=alpha,alpha-trehalose-phosphate synthase (predicted) --- --- --- --- --- --- SPAC22F8.05 // |||alpha,alpha-trehalose-phosphate synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.18354649886989 1.78129516163355 2.08860798545174 -1.23701293571904 -3.93092883077873 Max fold change at or above threshold 2 3.93092883077873 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774752_at SPAC31G5.12c.S1 --- 3.93071381142422 --- --- --- --- 0.916053950786591 2.77562189102173 1.18835353851318 3.60074591636658 0.888427972793579 0.870360970497131 0.976073980331421 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31G5.12c /GEN=n150 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC31G5.12c // |n150||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.09816690725094 3.02997644258657 2.14524158792778 1.2972527846125 3.93071381142422 Max fold change at or above threshold 2 3.93071381142422 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774052_at YDR275W.S1 Protein of unknown function, ORF exhibits genomic organization compatible with a translational readthrough-dependent mode of expression 3.92909297391322 1076.92642211914 346.578872680664 BSC2 --- 5811 // lipid particle // inferred from direct assay --- 327.062652587891 868.793273925781 1285.0595703125 366.095092773438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR275W /GEN=BSC2 /DB_XREF=GI:6320481 /SEG=NC_001136:+1012244,1012951 /DEF=Bypass of Stop Codon transcript encoded by this ORF shows a high level of stop codon bypass /NOTE=Bsc2p; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002683 // span:66-88 // numtm:1 S0002683 // BSC2 SGDID:S0002683, Chr IV from 1012246-1012953, Verified ORF // sgd // 11 // --- /// YDR275W // cdna:known chromosome:SGD1:IV:1012246:1012953:1 gene:YDR275W // ensembl // 11 // --- GENSCAN00000025314 // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene 1.17271926435187 2.65635121299065 1.77643186100385 3.92909297391322 1.11934239472683 Max fold change at or above threshold 4 3.92909297391322 Max fold change at or above threshold -0.845654224848382 0.345218412450117 1.26028601740158 -0.759850205003312 711.752647399902 454.902232506416 0.639129666982225 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771864_at SPAC15E1.08.S1 --- 3.92842973708746 --- --- --- --- 1.72473394870758 1.1280711889267 3.91264748573303 2.47931241989136 0.805419981479645 0.850341975688934 0.219482004642487 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15E1.08 /DEF=N-acetyltransferase complex (predicted) --- --- --- --- --- --- SPAC15E1.08 // |||N-acetyltransferase complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.86059979968698 -1.52892296659804 -3.92842973708746 2.26855132564936 1.43750427232514 Max fold change at or above threshold 1 3.92842973708746 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775604_at SPBC1A4.07c.S1 --- 3.92832960187788 --- --- --- --- 14.4453363418579 18.1776428222656 13.3086252212524 4.17724561691284 0.0561522990465164 0.0461426004767418 0.018554700538516 0.111571997404099 M P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1A4.07c /DEF=WD repeat protein --- --- --- --- --- --- SPBC1A4.07c // |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.92832960187788 1.25837449485982 -1.59711979205328 -1.08541161101977 -3.45810078377283 Max fold change at or above threshold 4 3.92832960187788 Max fold change at or above threshold MAPAPA No 4 0 MPPA 1 2 1 No No 1 < x = 2
1770785_at YPR193C.S1 Tetrameric histone acetyltransferase with similarity to Gcn5p, Hat1p, Elp3p, and Hpa3p; acetylates histones H3 and H4 in vitro and exhibits autoacetylation activity 3.92739436763165 1669.4931640625 4651.77026367188 HPA2 16573 // histone acetylation // non-traceable author statement 5737 // cytoplasm // inferred from direct assay 4402 // histone acetyltransferase activity // inferred from sequence similarity /// 4402 // histone acetyltransferase activity // inferred from physical interaction /// 4402 // histone acetyltransferase activity // non-traceable author statement 5083.81640625 1597.84497070313 1741.14135742188 4219.72412109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR193C /GEN=HPA2 /DB_XREF=GI:6325451 /SEG=NC_001148:-922903,923373 /DEF=Tetrameric histone acetyltransferase with similarity to Gcn5p, Hat1p, Elp3p, and Hpa3p; acetylates histones H3 and H4 in vitro and exhibits autoacetylation activity /NOTE=Hpa2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: histone acetyltransferase activity [goid GO:0004402] [evidence IPI,ISS,NAS] [pmid 10600387]; go_process: histone acetylation [goid GO:0016573] [evidence NAS] [pmid 10600387] --- --- --- --- --- --- S0006397 // HPA2 SGDID:S0006397, Chr XVI from 923375-922905, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020907 // cdna:GeneFinder chromosome:SGD1:XVI:922905:923375:-1 // ensembl // 11 // --- /// YPR193C // cdna:known chromosome:SGD1:XVI:922905:923375:-1 gene:YPR193C // ensembl // 11 // --- --- No cerevisiae_gene -3.92739436763165 -3.18167062478714 -1.27135256319653 -2.9198183045733 -1.20477459197789 Max fold change at or above threshold 4 3.92739436763165 Max fold change at or above threshold 1.09361502693597 -0.888675473026456 -0.807190276912978 0.602250723003469 3160.63171386719 1758.55730308598 0.556394247191268 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770474_at SPBC18H10.12c.S1 --- 3.92624666339083 --- --- --- --- 0.436625689268112 0.375950515270233 0.843097507953644 1.71430015563965 0.888427972793579 0.62548828125 0.601073980331421 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18H10.12c /GEN=rpl702 /DEF=60S ribosomal protein L7 --- --- --- --- --- --- SPBC18H10.12c // |rpl702|rpl7-2|60S ribosomal protein L7|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- U97365 // gb // 3 // Cross Hyb Matching Probes No No -1.20143221654885 -1.16139138406092 3.92235852869281 1.93093885375108 3.92624666339083 Max fold change at or above threshold 0 3.92624666339083 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770031_at SPBC36B7.07.S1 --- 3.92615932394456 --- --- --- --- 6.54829263687134 3.82709360122681 2.10825777053833 1.66786217689514 0.466064006090164 0.533936023712158 0.870360970497131 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC36B7.07 /GEN=tlg1 /DEF=SNARE --- --- --- --- --- --- SPBC36B7.07 // |tlg1||SNARE|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.3570866267759 -1.71103540158313 1.03235262527248 -3.10602087106231 -3.92615932394456 Max fold change at or above threshold 2 3.92615932394456 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769578_at SPAC3H1.04c.S1 --- 3.92614374339951 --- --- --- --- 1.42958760261536 1.97019529342651 1.20575642585754 2.74482822418213 0.601073980331421 0.633789002895355 0.725830018520355 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H1.04c /DEF=conserved fungal protein --- --- --- --- --- --- SPAC3H1.04c // |mdm31||mitochondrial inner membrane protein Mdm31|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.84539398361442 1.37815639267027 -3.92614374339951 -1.18563548321845 1.92001400904751 Max fold change at or above threshold 1 3.92614374339951 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779966_at SPCC736.14.S1 --- 3.92402344877724 --- --- --- --- 2.11002802848816 8.27979946136475 8.09038925170898 1.24430501461029 0.805419981479645 0.219482004642487 0.194580003619194 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC736.14 /GEN=dis1 /DEF=microtubule-associated protein (PMID 7628693) --- --- --- --- --- --- SPCC736.14 // |dis1||microtubule-associated protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.48705127479365 3.92402344877724 1.63713614955042 3.83425676933105 -1.69574823191483 Max fold change at or above threshold 2 3.92402344877724 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775680_at SPAC5D6.02c.S1 --- 3.92264508265325 --- --- --- --- 1.01382327079773 0.959135830402374 1.15024781227112 0.652565479278564 0.904784977436066 0.888427972793579 0.981445014476776 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5D6.02c /DEF=sequence orphan --- --- --- --- --- --- SPAC5D6.02c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.92264508265325 -1.05701740948663 -1.15866140190198 1.13456442104159 -1.55359623362019 Max fold change at or above threshold 0 3.92264508265325 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775307_at YGR277C.S1 Homolog to human PPAT 3.92198889860539 105.19522857666 332.836410522461 --- 15937 // coenzyme A biosynthesis // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4595 // pantetheine-phosphate adenylyltransferase activity // inferred from sequence similarity 318.151062011719 81.1198272705078 129.270629882813 347.521759033203 0.000244141003349796 0.00292969006113708 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR277C /GEN=RNH70 /DB_XREF=GI:6321716 /SEG=NC_001139:-1045649,1046566 /DEF=Homolog to human PPAT /NOTE=Ygr277cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14690591]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_function: pantetheine-phosphate adenylyltransferase activity [goid GO:0004595] [evidence ISS] [pmid 11923312]; go_process: coenzyme A biosynthesis [goid GO:0015937] [evidence ISS] [pmid 11923312] --- --- --- --- --- --- S0003509 // YGR277C SGDID:S0003509, Chr VII from 1046567-1045650, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019554 // cdna:Genscan chromosome:SGD1:VII:1045650:1046567:-1 // ensembl // 11 // --- /// YGR277C // cdna:known chromosome:SGD1:VII:1045650:1046567:-1 gene:YGR277C // ensembl // 11 // --- --- No cerevisiae_gene -1.9790846985705 -3.92198889860539 -1.00313492473583 -2.46112409524214 1.09231682847692 Max fold change at or above threshold 4 3.92198889860539 Max fold change at or above threshold 0.742973005342278 -1.03346698170766 -0.672598882351742 0.963092858717121 219.015819549561 133.430476947797 0.609227576447295 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779271_at SPAC18G6.06.S1 --- 3.92168822512917 --- --- --- --- 1.07457876205444 1.1033548116684 0.933172821998596 0.682059526443481 0.725830018520355 0.725830018520355 0.780517995357513 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18G6.06 /DEF=ribonucleoprotein (RNP) complex (predicted) (PMID 12068309) --- --- --- --- --- --- SPAC18G6.06 // |||ribonucleoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.92168822512917 1.02677891154199 1.02736132466259 -1.15153242435093 -1.57549117106788 Max fold change at or above threshold 0 3.92168822512917 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779224_at SPCC330.13.S1 --- 3.92076623638001 --- --- --- --- 4.41153621673584 5.32364225387573 17.2966022491455 7.6910548210144 0.5 0.466064006090164 0.149657994508743 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC330.13 /GEN=rpc37 /DEF=DNA-directed RNA polymerase III complex --- --- --- --- --- --- SPCC330.13 // |rpc37||DNA-directed RNA polymerase III complex subunit Rpc37|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.37086201376574 1.20675474309373 1.6858234769061 3.92076623638001 1.74339605143379 Max fold change at or above threshold 4 3.92076623638001 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770447_s_at YEL076C.S1 Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein 3.92060853260753 53.6690902709961 19.4722051620483 YRF1-5 /// YRF1-4 /// YRF1-7 /// YRF1-6 /// YRF1-3 /// YRF1-2 /// YRF1-1 722 // telomerase-independent telomere maintenance // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay /// 5634 // nucleus // inferred from curator 4386 // helicase activity // inferred from sequence similarity /// 3678 // DNA helicase activity // inferred from direct assay 17.8740177154541 48.8986320495605 58.4395484924316 21.0703926086426 0.007568359375 0.000244141003349796 0.000244141003349796 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL076C /DB_XREF=GI:6320758 /SEG=NC_001137:-4464,5114 /DEF=Hypothetical ORF /NOTE=Yel076cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 0.239999994635582 /// scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 2.40000009536743 /// scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 5.0 --- S0002953 // YRF1-1 SGDID:S0002953, Chr IV from 1526304-1531694, Verified ORF // sgd // 11 // --- /// S0000802 // YEL076C SGDID:S0000802, Chr V from 5114-4464, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0000992 // YRF1-2 SGDID:S0000992, Chr V from 571475-576520, Verified ORF // sgd // 11 // --- /// S0003528 // YRF1-3 SGDID:S0003528, Chr VII from 1084870-1084888,1085037-1090597, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0004458 // YRF1-4 SGDID:S0004458, Chr XII from 1067084-1071232, Verified ORF // sgd // 11 // --- /// S0004459 // YRF1-5 SGDID:S0004459, Chr XII from 1072505-1077895, Verified ORF // sgd // 11 // --- /// S0005283 // YRF1-6 SGDID:S0005283, Chr XIV from 6098-6080,5931-371, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0006204 // YRF1-7 SGDID:S0006204, Chr XVI from 6007-5989,5840-280, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000025522 // cdna:Genscan chromosome:SGD1:IV:1526304:1531694:1 // ensembl // 11 // --- /// GENEFINDER00000023783 // cdna:GeneFinder chromosome:SGD1:IV:1526496:1531694:1 // ensembl // 11 // --- /// GENSCAN00000016745 // cdna:Genscan chromosome:SGD1:V:4464:5114:-1 // ensembl // 11 // --- /// GENSCAN00000016965 // cdna:Genscan chromosome:SGD1:V:571475:576520:1 // ensembl // 11 // --- /// GENEFINDER00000019661 // cdna:GeneFinder chromosome:SGD1:V:571640:576520:1 // ensembl // 11 // --- /// GENSCAN00000019569 // cdna:Genscan chromosome:SGD1:VII:1085210:1090597:1 // ensembl // 11 // --- /// GENEFINDER00000021702 // cdna:GeneFinder chromosome:SGD1:VII:1085402:1090597:1 // ensembl // 11 // --- /// GENSCAN00000018171 // cdna:Genscan chromosome:SGD1:XII:1067084:1071232:1 // ensembl // 11 // --- /// GENSCAN00000018172 // cdna:Genscan chromosome:SGD1:XII:1072505:1077895:1 // ensembl // 11 // --- /// GENEFINDER00000024799 // cdna:GeneFinder chromosome:SGD1:XII:1072697:1077895:1 // ensembl // 11 // --- /// GENSCAN00000019774 // cdna:Genscan chromosome:SGD1:XIV:371:5758:-1 // ensembl // 11 // --- /// GENEFINDER00000020706 // cdna:GeneFinder chromosome:SGD1:XIV:371:5566:-1 // ensembl // 11 // --- /// GENSCAN00000017839 // cdna:Genscan chromosome:SGD1:XV:1085469:1090859:1 // ensembl // 11 // --- /// GENEFINDER00000022814 // cdna:GeneFinder chromosome:SGD1:XV:1085661:1090859:1 // ensembl // 11 // --- /// GENSCAN00000016966 // cdna:Genscan chromosome:SGD1:XVI:280:5667:-1 // ensembl // 11 // --- /// GENEFINDER00000020788 // cdna:GeneFinder chromosome:SGD1:XVI:280:5475:-1 // ensembl // 11 // --- /// YDR545W // cdna:known chromosome:SGD1:IV:1526304:1531694:1 gene:YDR545W // ensembl // 11 // --- /// YEL076C // cdna:known chromosome:SGD1:V:4464:5114:-1 gene:YEL076C // ensembl // 11 // --- /// YER190W // cdna:known chromosome:SGD1:V:571475:576520:1 gene:YER190W // ensembl // 11 // --- /// YGR296W // cdna:known chromosome:SGD1:VII:1084870:1090597:1 gene:YGR296W // ensembl // 11 // --- /// YLR466W // cdna:known chromosome:SGD1:XII:1067084:1071232:1 gene:YLR466W // ensembl // 11 // --- /// YLR467W // cdna:known chromosome:SGD1:XII:1072505:1077895:1 gene:YLR467W // ensembl // 11 // --- /// YNL339C // cdna:known chromosome:SGD1:XIV:371:6098:-1 gene:YNL339C // ensembl // 11 // --- /// YPL283C // cdna:known chromosome:SGD1:XVI:280:6007:-1 gene:YPL283C // ensembl // 11 // --- GENEFINDER00000019113 // ensembl // 6 // Cross Hyb Matching Probes /// GENEFINDER00000024515 // ensembl // 6 // Cross Hyb Matching Probes /// YLR465C // ensembl // 11 // Negative Strand Matching Probes No cerevisiae_gene 3.92060853260753 2.73573814393628 1.71381976971194 3.26952504035531 1.17882800297467 Max fold change at or above threshold 4 3.92060853260753 Max fold change at or above threshold -0.927118322400578 0.611313383897213 1.08442316069514 -0.768618222191774 36.5706477165222 20.1663903617578 0.551436510451711 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1772283_at YER061C.S1 Mitochondrial beta-keto-acyl synthase with possible role in fatty acid synthesis; required for mitochondrial respiration 3.92050148893178 668.923828125 185.622116088867 CEM1 6633 // fatty acid biosynthesis // inferred from sequence similarity 5739 // mitochondrion // traceable author statement 4312 // fatty-acid synthase activity // inferred from sequence similarity 183.026748657227 620.291015625 717.556640625 188.217483520508 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER061C /GEN=CEM1 /DB_XREF=GI:6320904 /SEG=NC_001137:-278296,279624 /DEF=homology with beta-keto-acyl synthases /NOTE=Cem1p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 7988550]; go_function: 3-oxoacyl-[acyl-carrier protein] synthase activity [goid GO:0004315] [evidence IMP,ISS] [pmid 8412701]; go_process: hexadecanal biosynthesis [goid GO:0006634] [evidence IMP,ISS] [pmid 8412701] --- --- --- --- --- --- S0000863 // CEM1 SGDID:S0000863, Chr V from 279624-278296, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016855 // cdna:Genscan chromosome:SGD1:V:278296:279624:-1 // ensembl // 11 // --- /// GENEFINDER00000019681 // cdna:GeneFinder chromosome:SGD1:V:278296:279624:-1 // ensembl // 11 // --- /// YER061C // cdna:known chromosome:SGD1:V:278296:279624:-1 gene:YER061C // ensembl // 11 // --- --- No cerevisiae_gene 2.14567646207232 3.38907301897541 3.03844661217268 3.92050148893178 1.02836052599613 Max fold change at or above threshold 4 3.92050148893178 Max fold change at or above threshold -0.866571308145095 0.684816723487637 1.02990946925595 -0.848154884598492 427.272972106934 281.853577604039 0.659656931291922 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774198_at SPBC211.04c.S1 --- 3.920252579558 --- --- --- --- 0.910160601139069 0.420031428337097 0.661584496498108 2.76539254188538 0.780517995357513 0.97509765625 0.5 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC211.04c /GEN=mcm6 /DEF=MCM complex subunit (PMID 9366552) --- --- --- --- --- --- SPBC211.04c // |mcm6|mis5|MCM complex subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.920252579558 -2.16688690354051 -1.3471187068686 -1.37572843069437 3.03835667949643 Max fold change at or above threshold 1 3.920252579558 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775464_x_at SPBPJ4664.03.S1 --- 3.92021056150287 --- --- --- --- 10.1440162658691 9.34204864501953 10.2078304290771 2.5876202583313 0.0676269978284836 0.129638999700546 0.366210997104645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPJ4664.03 /GEN=mfm3 /DEF=M-factor precursor (PMID 8196631) --- --- --- --- --- --- AB004296 // Schizosaccharomyces pombe mRNA for Mfm3, complete cds. // gb // 11 // --- /// SPBPJ4664.03 // |mfm3||M-factor precursor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- SPAPB8E5.05 // sanger // 1 // Cross Hyb Matching Probes No No -1.64935691223596 -1.08584494165283 -1.19949493155447 1.00629081830465 -3.92021056150287 Max fold change at or above threshold 4 3.92021056150287 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779784_at YJL133C-A.S1 --- 3.91914042815184 1676.40069580078 526.597549438477 --- --- --- --- 509.846282958984 1554.61315917969 1798.18823242188 543.348815917969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL133C-A /GEN=LCB3 /DB_XREF=GI:33438820 /SEG=NC_001142:-159541,159765 /DEF=Yjl133c-ap /NOTE=go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028805 // YJL133C-A SGDID:S0028805, Chr X from 159765-159541, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000024274 // cdna:GeneFinder chromosome:SGD1:X:159541:159765:-1 // ensembl // 11 // --- /// YJL133C-A // cdna:known chromosome:SGD1:X:159541:159765:-1 gene:YJL133C-A // ensembl // 11 // --- --- No cerevisiae_gene 3.91914042815184 3.04918013750578 2.81186902718877 3.52692231467447 1.06571104679737 Max fold change at or above threshold 4 3.91914042815184 Max fold change at or above threshold -0.881242450230035 0.674894629155903 1.03768963320257 -0.831341812128438 1101.49912261963 671.384860665986 0.609519196955212 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775580_at SPAP27G11.09c.S1 --- 3.91724919422886 --- --- --- --- 0.685907006263733 1.40420210361481 1.30665266513824 2.68686866760254 0.969726979732513 0.850341975688934 0.725830018520355 0.625244140625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP27G11.09c /DEF=GTP cyclohydrolase (predicted) --- --- --- --- --- --- SPAP27G11.09c // |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.0110291363715 2.04721936179624 1.57885399314019 1.904999734958 3.91724919422886 Max fold change at or above threshold 1 3.91724919422886 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775402_at YHR136C.S1 Protein with similarity to cyclin-dependent kinase inhibitors, overproduction suppresses a plc1 null mutation; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 3.91418888170245 237.029609680176 163.667785644531 SPL2 9266 // response to temperature // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay 4857 // enzyme inhibitor activity // inferred from sequence similarity 149.006774902344 293.626220703125 180.432998657227 178.328796386719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR136C /GEN=SPL2 /DB_XREF=GI:6321928 /SEG=NC_001140:-374655,375101 /DEF=Protein with similarity to cyclin-dependent kinase inhibitors, overproduction suppresses a plc1 null mutation; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Spl2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: enzyme inhibitor activity [goid GO:0004857] [evidence ISS] [pmid 9475719]; go_process: response to temperature [goid GO:0009266] [evidence IGI] [pmid 9475719] --- --- --- --- --- --- S0001178 // SPL2 SGDID:S0001178, Chr VIII from 375102-374656, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016667 // cdna:Genscan chromosome:SGD1:VIII:374656:375000:-1 // ensembl // 9 // --- /// GENEFINDER00000020271 // cdna:GeneFinder chromosome:SGD1:VIII:374656:375018:-1 // ensembl // 9 // --- /// YHR136C // cdna:known chromosome:SGD1:VIII:374656:375102:-1 gene:YHR136C // ensembl // 11 // --- --- No cerevisiae_gene 3.91418888170245 1.97055617702995 1.12030403956537 1.21090466373411 1.19678314293825 Max fold change at or above threshold 4 3.91418888170245 Max fold change at or above threshold -0.804505714597983 1.46161842595221 -0.312070386119582 -0.34504232523465 200.348697662354 63.8179714928013 0.318534496292825 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770574_at SPCC285.09c.S1 --- 3.91385496297499 --- --- --- --- 13.3684730529785 4.04049587249756 8.27132320404053 3.41567921638489 0.0375977009534836 0.129638999700546 0.0952147990465164 0.149657994508743 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC285.09c /GEN=cgs2 /DEF=3,5-cyclic-nucleotide phosphodiesterase (PMID 8392846) --- --- --- --- --- --- SPCC285.09c // |cgs2|pde1|cAMP-specific phosphodiesterase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.0547845391522 -3.30862188078787 -1.14845714163056 -1.61624358318486 -3.91385496297499 Max fold change at or above threshold 4 3.91385496297499 Max fold change at or above threshold PPAAAA No 4 0 PAAA 3 1 0 No No x = 1
1773061_s_at YIL169C.S1 ORF /// Hypothetical protein 3.91351709105603 1607.04461669922 532.129272460938 --- 7047 // cell wall organization and biogenesis // inferred from genetic interaction 5576 // extracellular region // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay 15926 // glucosidase activity // inferred from sequence similarity 479.726684570313 1336.67065429688 1877.41857910156 584.531860351563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL169C /GEN=VTH1 /DB_XREF=GI:6322022 /SEG=NC_001141:-23119,26106 /DEF=Hypothetical ORF /NOTE=Yil169cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001431 // YIL169C SGDID:S0001431, Chr IX from 26106-23119, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0005515 // YOL155C SGDID:S0005515, Chr XV from 31605-28702, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016347 // cdna:Genscan chromosome:SGD1:IX:23119:26106:-1 // ensembl // 11 // --- /// GENEFINDER00000019051 // cdna:GeneFinder chromosome:SGD1:IX:23119:26106:-1 // ensembl // 11 // --- /// GENSCAN00000017346 // cdna:Genscan chromosome:SGD1:XV:28702:31605:-1 // ensembl // 11 // --- /// GENEFINDER00000022849 // cdna:GeneFinder chromosome:SGD1:XV:28702:31605:-1 // ensembl // 11 // --- /// YIL169C // cdna:known chromosome:SGD1:IX:23119:26106:-1 gene:YIL169C // ensembl // 11 // --- /// YOL155C // cdna:known chromosome:SGD1:XV:28702:31605:-1 gene:YOL155C // ensembl // 11 // --- --- No cerevisiae_gene 3.19779099885214 2.78631707863848 1.10387231702622 3.91351709105603 1.21846851374366 Max fold change at or above threshold 4 3.91351709105603 Max fold change at or above threshold -0.893611692461641 0.404619775309171 1.22382849479781 -0.734836577645342 1069.58694458008 660.085655755994 0.617140718761432 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770860_at SPBC16A3.08c.S1 --- 3.91290665258002 --- --- --- --- 1.70560324192047 6.61206197738647 6.67386627197266 2.91402149200439 0.850341975688934 0.567627012729645 0.533936023712158 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16A3.08c /DEF=nuclear telomere cap complex (predicted) --- --- --- --- --- --- D89108 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0243. // gb // 10 // --- /// SPBC16A3.08c // |||nuclear telomere cap complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.85396449462619 3.8766706200332 3.74952481671152 3.91290665258002 1.7084990344667 Max fold change at or above threshold 3 3.91290665258002 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778932_at YKL014C.S1 Nucleolar protein required for the normal accumulation of 25S and 5.8S rRNAs, associated with the 27SA2 pre-ribosomal particle; proposed to be involved in the biogenesis of the 60S ribosomal subunit 3.91224345854337 53.2304801940918 216.122093200684 URB1 6364 // rRNA processing // inferred from mutant phenotype /// 30489 // processing of 27S pre-rRNA // inferred from mutant phenotype /// 30489 // processing of 27S pre-rRNA // inferred from genetic interaction 5730 // nucleolus // inferred from direct assay --- 189.736450195313 57.9628410339355 48.498119354248 242.507736206055 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL014C /GEN=PUT3 /DB_XREF=GI:6322838 /SEG=NC_001143:-411262,416556 /DEF=Protein required for cell viability /NOTE=Ykl014cp --- --- --- --- --- --- S0001497 // URB1 SGDID:S0001497, Chr XI from 416556-411262, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018408 // cdna:Genscan chromosome:SGD1:XI:411262:416556:-1 // ensembl // 11 // --- /// GENEFINDER00000022974 // cdna:GeneFinder chromosome:SGD1:XI:411262:416556:-1 // ensembl // 11 // --- /// YKL014C // cdna:known chromosome:SGD1:XI:411262:416556:-1 gene:YKL014C // ensembl // 11 // --- --- No cerevisiae_gene 1.51089446774508 -3.2734152917768 -1.26484430532765 -3.91224345854337 1.27812940505854 Max fold change at or above threshold 4 3.91224345854337 Max fold change at or above threshold 0.570223508818234 -0.794472943426681 -0.892493117420222 1.11674255202867 134.676286697388 96.5589153138124 0.716970430962182 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777324_at SPAC22A12.03c.S1 --- 3.91197659483867 --- --- --- --- 9.17084312438965 11.6060028076172 10.412015914917 5.73696804046631 0.194580003619194 0.0461426004767418 0.0107421996071935 0.219482004642487 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22A12.03c /GEN=csn4 /DEF=COP9signalosome complex (subunit 4) (PMID 11854407) --- --- --- --- --- --- SPAC22A12.03c // |csn4||COP9/signalosome complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.32036451988288 1.26553280327643 -3.91197659483867 1.13533900576998 -1.59855224217777 Max fold change at or above threshold 4 3.91197659483867 Max fold change at or above threshold AAPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1770585_at SPCC1322.08.S1 --- 3.91174299214667 --- --- --- --- 1.34870100021362 0.344782620668411 0.464740425348282 0.739798843860626 0.5 0.904784977436066 0.601073980331421 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1322.08 /GEN=srk1 /DEF=MAPK-activated protein kinase --- --- --- --- --- --- SPCC1322.08 // |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.63775817759033 -3.91174299214667 -1.150709146642 -2.90205225681173 -1.82306448760511 Max fold change at or above threshold 0 3.91174299214667 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771347_at SPCC1223.06.S1 --- 3.91093337077668 --- --- --- --- 1.23783195018768 1.34573400020599 4.20666599273682 4.84107828140259 0.533936023712158 0.334473013877869 0.219482004642487 0.00292969006113708 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1223.06 /GEN=tea1 /DEF=microtubule-associated protein --- --- --- --- --- --- SPCC1223.06 // |tea1||cell end marker Tea1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.61660997678378 1.08717019301526 2.65736110882387 3.39841445528934 3.91093337077668 Max fold change at or above threshold 2 3.91093337077668 Max fold change at or above threshold AAAAAP No 3 0 AAAP 3 1 0 No No x = 1
1776623_at YER075C.S1 Phosphotyrosine-specific protein phosphatase involved in the inactivation of mitogen-activated protein kinase (MAPK) during osmolarity sensing; dephosporylates Hog1p MAPK and regulates its localization; localized to the cytoplasm 3.90822792857057 180.82689666748 582.169403076172 PTP3 173 // inactivation of MAPK activity during osmolarity sensing // inferred from mutant phenotype /// 173 // inactivation of MAPK activity during osmolarity sensing // inferred from physical interaction /// 750 // signal transduction during conjugation with cellular fusion // inferred from mutant phenotype /// 750 // signal transduction during conjugation with cellular fusion // inferred from physical interaction /// 6470 // protein amino acid dephosphorylation // inferred from direct assay /// 6470 // protein amino acid dephosphorylation // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4725 // protein tyrosine phosphatase activity // inferred from direct assay 579.26806640625 213.436218261719 148.217575073242 585.070739746094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER075C /GEN=PTP3 /DB_XREF=GI:6320919 /SEG=NC_001137:-308409,311195 /DEF=Protein tyrosine phosphatase /NOTE=Ptp3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10523653]; go_function: protein tyrosine phosphatase activity [goid GO:0004725] [evidence IDA] [pmid 9224718]; go_process: inactivation of MAPK during osmolarity sensing [goid GO:0000173] [evidence IMP,IPI] [pmid 9211927]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence IDA,IMP] [pmid 9224718]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence IMP,IPI] [pmid 9224718] --- --- --- --- --- --- S0000877 // PTP3 SGDID:S0000877, Chr V from 311195-308409, reverse complement, Verified ORF // sgd // 11 // --- /// YER075C // cdna:known chromosome:SGD1:V:308409:311195:-1 gene:YER075C // ensembl // 11 // --- --- No cerevisiae_gene -1.87259220674673 -2.71401016717764 -1.13945656413205 -3.90822792857057 1.01001725052072 Max fold change at or above threshold 4 3.90822792857057 Max fold change at or above threshold 0.847881183741555 -0.720516810708504 -1.00012283652709 0.872758463494039 381.498149871826 233.251922942433 0.611410364691938 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775731_at SPAC22F3.07c.S1 --- 3.90777203467844 --- --- --- --- 2.95807313919067 4.55401563644409 0.756971776485443 3.41428518295288 0.390380859375 0.334473013877869 0.567627012729645 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F3.07c /DEF=ATP synthase (subunit G) --- --- --- --- --- --- SPAC22F3.07c // |||ATP synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.41403011743564 1.53952097265927 -1.80736746076402 -3.90777203467844 1.15422608647433 Max fold change at or above threshold 3 3.90777203467844 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1775138_at SPCC191.10.S1 --- 3.90727170001726 --- --- --- --- 2.96045160293579 7.66626596450806 0.970024526119232 0.887544512748718 0.274170011281967 0.274170011281967 0.533936023712158 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC191.10 /DEF=sequence orphan --- --- --- --- --- --- SPCC191.10 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.55552609408116 2.58955963235665 -3.90727170001726 -3.0519347946589 -3.33555282063239 Max fold change at or above threshold 2 3.90727170001726 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780218_at SPAC22F8.11.S1 --- 3.90593223733413 --- --- --- --- 9.34634876251221 11.6599378585815 6.64225769042969 4.36961126327515 0.0952147990465164 0.21240234375 0.219482004642487 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F8.11 /GEN=plc1 /DEF=1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase 1 --- --- --- --- --- --- SPAC22F8.11 // |plc1||phosphoinositide phospholipase C Plc1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.90593223733413 1.24753934984205 -3.50815459623551 -1.40710421036188 -2.13894284854686 Max fold change at or above threshold 4 3.90593223733413 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771728_at SPAC3G6.09c.S1 --- 3.90546765186057 --- --- --- --- 1.80567133426666 6.07942152023315 7.05199098587036 1.13043773174286 0.696289002895355 0.366210997104645 0.149657994508743 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G6.09c /DEF=glycosyl transferase family 20 --- --- --- --- --- --- SPAC3G6.09c // |||trehalose-phosphate synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.11575209698985 3.36684833217568 -1.57977482340384 3.90546765186057 -1.59732047468263 Max fold change at or above threshold 2 3.90546765186057 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773271_at YOR384W.S1 Putative ferric reductase with similarity to Fre2p; expression induced by low iron levels 3.90463813060318 3.32257533073425 0.948302447795868 FRE5 --- 5739 // mitochondrion // inferred from direct assay 293 // ferric-chelate reductase activity // inferred from sequence similarity 0.940554857254028 3.67252635955811 2.9726243019104 0.956050038337708 0.953857004642487 0.432372987270355 0.457763671875 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR384W /GEN=FRE5 /DB_XREF=GI:6324960 /SEG=NC_001147:+1061560,1063644 /DEF=Putative ferric reductase with similarity to Fre2p; expression induced by low iron levels /NOTE=Fre5p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: ferric-chelate reductase activity [goid GO:0000293] [evidence ISS] [pmid 11120744]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005911 // span:162-184,224-246,266-288,312-334,349-368,375-392 // numtm:6 S0005911 // FRE5 SGDID:S0005911, Chr XV from 1061560-1063644, Verified ORF // sgd // 11 // --- /// GENSCAN00000017829 // cdna:Genscan chromosome:SGD1:XV:1062442:1063644:1 // ensembl // 11 // --- /// GENEFINDER00000022592 // cdna:GeneFinder chromosome:SGD1:XV:1062838:1063644:1 // ensembl // 11 // --- /// YOR384W // cdna:known chromosome:SGD1:XV:1061560:1063644:1 gene:YOR384W // ensembl // 11 // --- --- No cerevisiae_gene 1.58098952768498 3.90463813060318 2.01917186758946 3.16050071825587 1.01647451072542 Max fold change at or above threshold 2 3.90463813060318 Max fold change at or above threshold -0.853327288732129 1.09771211969563 0.597876563080676 -0.842261394044177 2.13543888926506 1.40026464381139 0.65572686291824 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778269_at SPBC9B6.11c.S1 --- 3.90309516741518 --- --- --- --- 10.1315145492554 10.0769844055176 9.11895751953125 2.59576416015625 0.171387001872063 0.111571997404099 0.00805663969367743 0.303710997104645 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC9B6.11c /DEF=cr4p-like --- --- --- --- --- --- SPBC9B6.11c // |||cr4p-like|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.65774693764003 -1.00541135537611 -2.77878584471825 -1.11103868260768 -3.90309516741518 Max fold change at or above threshold 4 3.90309516741518 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1769416_at SPBC4F6.04.S1 --- 3.90262955819485 --- --- --- --- 3.23497772216797 3.61184906959534 1.53151595592499 2.47840809822083 0.780517995357513 0.725830018520355 0.828612983226776 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4F6.04 /GEN=rpl2502 /DEF=60S ribosomal protein L25 --- --- --- --- --- --- SPBC4F6.04 // |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.90262955819485 1.11649890039267 -1.44168036522694 -2.11227164147575 -1.30526434467764 Max fold change at or above threshold 2 3.90262955819485 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771207_at SPAC23H3.05c.S1 --- 3.89979282454096 --- --- --- --- 5.83494520187378 2.69729518890381 10.1325187683105 1.4962192773819 0.219482004642487 0.334473013877869 0.219482004642487 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H3.05c /GEN=swd1 /DEF=SET1 complex (TAP) (PMID 12488447) --- --- --- --- --- --- SPAC23H3.05c // |swd1||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.43334888428416 -2.16325792811914 -2.64407838436107 1.7365233807263 -3.89979282454096 Max fold change at or above threshold 3 3.89979282454096 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772165_at YOR073W.S1 Component of the spindle checkpoint, involved in sensing lack of tension on mitotic chromosomes; protects centromeric Rec8p at meiosis I; required for accurate chromosomal segregation at meiosis II and for mitotic chromosome stability 3.8969493633692 255.69994354248 799 SGO1 70 // mitotic sister chromatid segregation // inferred from mutant phenotype /// 70 // mitotic sister chromatid segregation // inferred from genetic interaction /// 45144 // meiotic sister chromatid segregation // inferred from mutant phenotype /// 45144 // meiotic sister chromatid segregation // inferred from genetic interaction 775 // chromosome, pericentric region // inferred from direct assay /// 776 // kinetochore // inferred from direct assay /// 5634 // nucleus // inferred from direct assay /// 5816 // spindle pole body // inferred from direct assay --- 711.327941894531 328.865325927734 182.534561157227 886.672058105469 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR073W /GEN=SGO1 /DB_XREF=GI:6324647 /SEG=NC_001147:+464772,466544 /DEF=Protein that protects centromeric Rec8p at meiosis I; required for accurate chromosomal segregation at meiosis II and for mitotic chromosome stability; evolutionarily conserved, with similarity to S. pombe Sgo1 and Drosophila MEI-S332 /NOTE=Sgo1p; go_component: chromosome, pericentric region [goid GO:0000775] [evidence IDA] [pmid 14730319]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiotic sister chromatid segregation [goid GO:0045144] [evidence IMP] [pmid 14730319]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence IMP] [pmid 14730319] --- --- --- --- --- --- S0005599 // SGO1 SGDID:S0005599, Chr XV from 464772-466544, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022544 // cdna:GeneFinder chromosome:SGD1:XV:464772:466544:1 // ensembl // 11 // --- /// GENSCAN00000017514 // cdna:Genscan chromosome:SGD1:XV:465177:466544:1 // ensembl // 11 // --- /// YOR073W // cdna:known chromosome:SGD1:XV:464772:466544:1 gene:YOR073W // ensembl // 11 // --- --- No cerevisiae_gene -1.21098899226267 -2.16297640953136 -1.24916069850292 -3.8969493633692 1.24650250030096 Max fold change at or above threshold 4 3.8969493633692 Max fold change at or above threshold 0.562214608519885 -0.606545269443582 -1.05371453419161 1.0980451951153 527.34997177124 327.237975206017 0.620532839144572 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772683_at SPAC1556.08c.S1 --- 3.89563694085345 --- --- --- --- 10.391773223877 6.90815734863281 7.14141273498535 3.33674454689026 0.111571997404099 0.334473013877869 0.303710997104645 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1556.08c /DEF=protein kinase activator activity (predicted) --- --- --- --- --- --- SPAC1556.08c // ||SPAC1F12.01c|protein kinase activator activity |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.89563694085345 -1.50427569892188 -2.83409281927832 -1.45514250604342 -3.11434485854237 Max fold change at or above threshold 4 3.89563694085345 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772802_at YLL004W.S1 Subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing 3.89502062035054 70.3002681732178 260.444869995117 ORC3 6267 // pre-replicative complex formation and maintenance // traceable author statement /// 6270 // DNA replication initiation // traceable author statement /// 30466 // chromatin silencing at silent mating-type cassette // traceable author statement 5656 // pre-replicative complex // traceable author statement /// 5664 // nuclear origin of replication recognition complex // traceable author statement 3688 // DNA replication origin binding // traceable author statement 239.181091308594 79.1936492919922 61.4068870544434 281.708648681641 0.00585938012227416 0.0375977009534836 0.030273400247097 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL004W /GEN=ORC3 /DB_XREF=GI:6323025 /SEG=NC_001144:+141072,142922 /DEF=Subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing /NOTE=Orc3p; go_component: nuclear origin of replication recognition complex [goid GO:0005664] [evidence TAS] [pmid 9442876]; go_function: DNA replication origin binding [goid GO:0003688] [evidence TAS] [pmid 9442876]; go_process: DNA replication initiation [goid GO:0006270] [evidence TAS] [pmid 9442876]; go_process: chromatin silencing at silent mating-type cassette (sensu Fungi) [goid GO:0030466] [evidence TAS] [pmid 9442876]; go_process: pre-replicative complex formation and maintenance [goid GO:0006267] [evidence TAS] [pmid 9442876] --- --- --- --- --- --- S0003927 // ORC3 SGDID:S0003927, Chr XII from 141072-142922, Verified ORF // sgd // 11 // --- /// GENSCAN00000017734 // cdna:Genscan chromosome:SGD1:XII:141072:142922:1 // ensembl // 11 // --- /// YLL004W // cdna:known chromosome:SGD1:XII:141072:142922:1 gene:YLL004W // ensembl // 11 // --- --- No cerevisiae_gene -2.62785184253817 -3.02020545140832 -1.04523798060862 -3.89502062035054 1.17780484711552 Max fold change at or above threshold 4 3.89502062035054 Max fold change at or above threshold 0.662664685595359 -0.773728088138448 -0.933420476641574 1.04448387918466 165.372569084167 111.3814027348 0.673518004537449 PPPPPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1772495_at SPAC4F10.07c.S1 --- 3.89483691889605 --- --- --- --- 10.6365375518799 9.28212356567383 6.49308490753174 2.73093271255493 0.129638999700546 0.0676269978284836 0.129638999700546 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F10.07c /DEF=localization nucleolus (GFP) --- --- --- --- --- --- SPAC4F10.07c // |||autophagy protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.18637422700502 -1.14591639258228 -2.38686179499285 -1.63813313753866 -3.89483691889605 Max fold change at or above threshold 4 3.89483691889605 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772536_at YHL043W.S1 Non-essential protein of unknown function 3.8945177311114 60.4439086914063 17.7462034225464 ECM34 7047 // cell wall organization and biogenesis // inferred from mutant phenotype --- --- 16.6081142425537 64.6805953979492 56.2072219848633 18.8842926025391 0.001220703125 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL043W /GEN=ECM34 /DB_XREF=GI:6321744 /SEG=NC_001140:+14899,15411 /DEF=Non-essential protein of unknown function /NOTE=Ecm34p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584] --- --- --- --- --- S0001035 // span:48-70,98-115 // numtm:2 S0001035 // ECM34 SGDID:S0001035, Chr VIII from 14899-15411, Verified ORF // sgd // 11 // --- /// GENSCAN00000016516 // cdna:Genscan chromosome:SGD1:VIII:14899:15411:1 // ensembl // 11 // --- /// YHL043W // cdna:known chromosome:SGD1:VIII:14899:15411:1 gene:YHL043W // ensembl // 11 // --- --- No cerevisiae_gene 1.06788221789769 3.8945177311114 1.84512913389534 3.38432293781119 1.13705218586185 Max fold change at or above threshold 4 3.8945177311114 Max fold change at or above threshold -0.902713123679411 1.02710285507559 0.686948758313398 -0.811338489709575 39.0950560569763 24.910396475424 0.637175105699302 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779878_at SPAC11D3.05.S1 --- 3.89386101893827 --- --- --- --- 5.74767255783081 22.3806381225586 7.39801454544067 8.23332023620605 0.194580003619194 0.054443359375 0.171387001872063 0.0561522990465164 A M A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11D3.05 /DEF=unknown specificity --- --- --- --- --- --- SPAC11D3.05 // |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.39106176396825 3.89386101893827 1.36262536873401 1.28713222108684 1.43246160134657 Max fold change at or above threshold 4 3.89386101893827 Max fold change at or above threshold AAMAAM No 4 0 AMAM 2 0 2 No No x = 1
1777135_at SPAC19A8.04.S1 --- 3.89334379875137 --- --- --- --- 5.4637017250061 20.0258865356445 1.55329942703247 1.4033442735672 0.219482004642487 0.274170011281967 0.665526986122131 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19A8.04 /DEF=cytochrome p450 (predicted) --- --- --- --- --- --- SPAC19A8.04 // |erg5||C-22 sterol desaturase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.19983299315522 3.66525984461975 1.51050936127649 -3.51748132389666 -3.89334379875137 Max fold change at or above threshold 2 3.89334379875137 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779852_at SPAPB18E9.03c.S1 --- 3.89176774455029 --- --- --- --- 5.25640153884888 6.68846607208252 3.10227584838867 1.77125144004822 0.129638999700546 0.466064006090164 0.5 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB18E9.03c /DEF=dubious --- --- --- --- --- --- SPAPB18E9.03c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -3.89176774455029 1.27244199718183 -1.02304181465706 -1.6943694873488 -2.96762019214267 Max fold change at or above threshold 3 3.89176774455029 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774249_at SPAP27G11.06c.S1 --- 3.89129024402252 --- --- --- --- 0.901913344860077 1.77400887012482 1.83431756496429 3.50960659980774 0.943848013877869 0.932372987270355 0.696289002895355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP27G11.06c /DEF=AP-1 adaptor complex (predicted) --- --- --- --- --- --- SPAP27G11.06c // |||AP-1 adaptor complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.02481324671986 1.96693937420345 1.17260777862479 2.03380687891792 3.89129024402252 Max fold change at or above threshold 1 3.89129024402252 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773172_at YJL124C.S1 Component of small nuclear ribonucleoprotein complexes involved in mRNA decapping and decay 3.89082624277357 276.049743652344 969.247741699219 LSM1 288 // mRNA catabolism, deadenylylation-dependent decay // inferred from genetic interaction /// 288 // mRNA catabolism, deadenylylation-dependent decay // inferred from mutant phenotype /// 290 // deadenylylation-dependent decapping // inferred from genetic interaction /// 290 // deadenylylation-dependent decapping // inferred from mutant phenotype /// 290 // deadenylylation-dependent decapping // inferred from physical interaction /// 6364 // rRNA processing // inferred from mutant phenotype /// 6402 // mRNA catabolism // traceable author statement 932 // cytoplasmic mRNA processing body // inferred from direct assay /// 932 // cytoplasmic mRNA processing body // inferred from mutant phenotype /// 5845 // mRNA cap complex // inferred from physical interaction /// 5845 // mRNA cap complex // traceable author statement 339 // RNA cap binding // inferred from genetic interaction /// 339 // RNA cap binding // inferred from mutant phenotype /// 339 // RNA cap binding // traceable author statement /// 339 // RNA cap binding // inferred from physical interaction /// 3723 // RNA binding // traceable author statement 926.738220214844 238.185455322266 313.914031982422 1011.75726318359 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL124C /GEN=LSM1 /DB_XREF=GI:6322337 /SEG=NC_001142:-187046,187564 /DEF=Like Sm protein; the finding that Lsm1 contains the Sm consensus motifs and most closely resembles Sm-B has been controversial (Fromont-Racine et al, 1997 Nature Genetics 16:277-282, and Bertrand Seraphin, personal communication). /NOTE=Lsm1p; go_component: cytoplasmic mRNA processing body [goid GO:0000932] [evidence IDA,IMP] [pmid 12730603]; go_component: mRNA cap complex [goid GO:0005845] [evidence IPI,TAS] [pmid 11741542]; go_function: RNA cap binding [goid GO:0000339] [evidence IGI,IMP,IPI,TAS] [pmid 11741542]; go_process: deadenylation-dependent decapping [goid GO:0000290] [evidence IGI,IMP,IPI] [pmid 10761922]; go_process: mRNA catabolism, deadenylation-dependent [goid GO:0000288] [evidence IGI,IMP] [pmid 10747033]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 12438310] --- --- --- --- --- --- S0003660 // LSM1 SGDID:S0003660, Chr X from 187564-187046, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024398 // cdna:GeneFinder chromosome:SGD1:X:187046:187564:-1 // ensembl // 11 // --- /// YJL124C // cdna:known chromosome:SGD1:X:187046:187564:-1 gene:YJL124C // ensembl // 11 // --- --- No cerevisiae_gene -1.13609958680088 -3.89082624277357 1.05242754407545 -2.95220387047476 1.09174008486349 Max fold change at or above threshold 4 3.89082624277357 Max fold change at or above threshold 0.754736430157689 -0.954220617471408 -0.766265690283679 0.965749877597398 622.648742675781 402.908174812137 0.647087430194868 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777151_at SPAPB1A11.02.S1 --- 3.8907946571976 --- --- --- --- 0.86668336391449 2.10324549674988 3.37208700180054 1.48880243301392 0.805419981479645 0.633789002895355 0.398925989866257 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1A11.02 /DEF=esteraselipase (predicted) --- --- --- --- --- --- SPAPB1A11.02 // |||esterase/lipase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.08770898823814 2.42677497263856 -1.3974020232754 3.8907946571976 1.71781586563465 Max fold change at or above threshold 1 3.8907946571976 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773705_at SPBP4H10.05c.S1 --- 3.88936963671439 --- --- --- --- 11.1218395233154 15.1705131530762 9.27779388427734 6.74898767471313 0.149657994508743 0.0771484375 0.0676269978284836 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP4H10.05c /GEN=spe2 /DEF=S-adenosylmethionine decarboxylase proenzyme --- --- --- --- --- --- AB045110 // Schizosaccharomyces pombe spe2 mRNA for S-adenosylmethionine decarboxylase proenzyme, complete cds. // gb // 11 // --- /// SPBP4H10.05c // |spe2||S-adenosylmethionine decarboxylase proenzyme|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.88936963671439 1.36402913576241 -1.92800635631889 -1.19875906514404 -1.64792707578743 Max fold change at or above threshold 4 3.88936963671439 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771032_at SPAC4F10.14c.S1 --- 3.88813187945149 --- --- --- --- 13.5349168777466 8.35864543914795 10.9316263198853 6.25749349594116 0.129638999700546 0.274170011281967 0.0461426004767418 0.0561522990465164 A A P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F10.14c /GEN=btf3 /DEF=nascent polypeptide-associated complex (predicted) (PMID 8809106) --- --- --- --- --- --- U49084 // Schizosaccharomyces pombe transcription factor BTF3 (spBTF3) mRNA, complete cds. // gb // 9 // --- /// SPAC4F10.14c // |btf3||nascent polypeptide-associated complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.88813187945149 -1.61927156454746 -2.56969560570014 -1.23814302480554 -2.16299335932603 Max fold change at or above threshold 4 3.88813187945149 Max fold change at or above threshold AAAAPM No 4 0 AAPM 2 1 1 No No x = 1
1774985_at YJL070C.S1 Hypothetical protein 3.88702567369826 267.262504577637 795.007965087891 --- --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 814.101928710938 240.539138793945 293.985870361328 775.914001464844 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL070C /GEN=ARG2 /DB_XREF=GI:6322391 /SEG=NC_001142:-307887,310553 /DEF=Hypothetical ORF /NOTE=Yjl070cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003606 // YJL070C SGDID:S0003606, Chr X from 310553-307887, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024085 // cdna:Genscan chromosome:SGD1:X:307887:310553:-1 // ensembl // 11 // --- /// GENEFINDER00000024351 // cdna:GeneFinder chromosome:SGD1:X:307887:310553:-1 // ensembl // 11 // --- /// YJL070C // cdna:known chromosome:SGD1:X:307887:310553:-1 gene:YJL070C // ensembl // 11 // --- --- No cerevisiae_gene -3.88702567369826 -3.38448841545212 1.12050430019059 -2.76918726641642 -1.04921670078643 Max fold change at or above threshold 4 3.88702567369826 Max fold change at or above threshold 0.925115285319695 -0.950058420711106 -0.775322703069892 0.800265838461304 531.135234832764 305.871817673392 0.575883122816547 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775528_at YLL035W.S1 Protein of unknown function, required for cell growth and possibly involved in rRNA processing; mRNA is cell cycle regulated 3.88701813564169 67.7434864044189 264.240631103516 GRC3 6364 // rRNA processing // inferred from mutant phenotype --- --- 233.593933105469 60.0959205627441 75.3910522460938 294.887329101563 0.014160200022161 0.030273400247097 0.018554700538516 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL035W /GEN=GRC3 /DB_XREF=GI:6322993 /SEG=NC_001144:+68579,70477 /DEF=Protein of unknown function, required for cell growth and possibly involved in rRNA processing; mRNA is cell cycle regulated /NOTE=Grc3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell growth and/or maintenance [goid GO:0008151] [evidence IEP,IMP] [pmid 10649456]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 12837249] --- --- --- --- --- --- S0003958 // GRC3 SGDID:S0003958, Chr XII from 68579-70477, Verified ORF // sgd // 10 // --- /// GENSCAN00000017684 // cdna:Genscan chromosome:SGD1:XII:68579:70477:1 // ensembl // 10 // --- /// YLL035W // cdna:known chromosome:SGD1:XII:68579:70477:1 gene:YLL035W // ensembl // 10 // --- --- No cerevisiae_gene -1.50567558838028 -3.88701813564169 -1.15298357085559 -3.09843046550092 1.26239292768113 Max fold change at or above threshold 4 3.88701813564169 Max fold change at or above threshold 0.581060534816335 -0.910212435419108 -0.778745704928727 1.1078976055315 165.992058753967 116.342223057481 0.700890295179261 PPPPPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1769911_at SPBC651.10.S1 --- 3.88667843948406 --- --- --- --- 2.20675110816956 8.57693195343018 1.43452191352844 4.25562572479248 0.633789002895355 0.194580003619194 0.5 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC651.10 /DEF=hypothetical protein --- --- --- --- --- --- SPBC651.10 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.6991396191679 3.88667843948406 1.93616705660298 -1.53831815837633 1.92845749982308 Max fold change at or above threshold 2 3.88667843948406 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776469_at SPBC13E7.07.S1 --- 3.88575915069858 --- --- --- --- 6.84617710113525 12.1209011077881 5.34072875976563 1.88289046287537 0.601073980331421 0.466064006090164 0.219482004642487 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13E7.07 /DEF=hypothetical protein --- --- --- --- --- --- SPBC13E7.07 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.88575915069858 1.77046268723872 1.11575051433142 -1.28188069626582 -3.6359932965407 Max fold change at or above threshold 3 3.88575915069858 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773249_at SPAC607.05.S1 --- 3.88528842599737 --- --- --- --- 7.1637020111084 2.15185785293579 1.84380185604095 3.83016133308411 0.0461426004767418 0.366210997104645 0.111571997404099 0.0375977009534836 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC607.05 /GEN=rpn9 /DEF=19S proteasome regulatory subunit --- --- --- --- --- --- SPAC607.05 // |rpn9||19S proteasome regulatory subunit|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.08280577755779 -3.32907770898292 -1.0223639902689 -3.88528842599737 -1.87033949437845 Max fold change at or above threshold 2 3.88528842599737 Max fold change at or above threshold PPAPAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1770420_at SPBC30B4.03c.S1 --- 3.88511500304566 --- --- --- --- 11.3776025772095 16.5142803192139 13.6778888702393 5.04351234436035 0.0805663987994194 0.00415039015933871 0.0375977009534836 0.06494140625 A P P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30B4.03c /DEF=conserved protein (S. pombe and plants) --- --- --- --- --- --- SPBC30B4.03c // |||conserved protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.97113305898525 1.45147276916612 -3.88511500304566 1.2021767131889 -2.25588871412834 Max fold change at or above threshold 4 3.88511500304566 Max fold change at or above threshold AAPAPM No 3 0 APPM 1 2 1 No No 1 < x = 2
1775707_at SPCC737.05.S1 --- 3.88405385630495 --- --- --- --- 9.56315135955811 11.0955276489258 9.00414943695068 2.46215724945068 0.12451171875 0.0676269978284836 0.194580003619194 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC737.05 /DEF=predicted N-terminal signal sequence --- --- --- --- --- --- SPCC737.05 // |||pex24 family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -2.87836908442194 1.16023758610033 -1.92714483867977 -1.0620827015946 -3.88405385630495 Max fold change at or above threshold 3 3.88405385630495 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777789_at SPCC13B11.04c.S1 --- 3.88342840050128 --- --- --- --- 1.50325381755829 5.83777856826782 3.03373026847839 0.496637225151062 0.696289002895355 0.780517995357513 0.780517995357513 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC13B11.04c /DEF=glutathione-dependent formaldehyde dehydrogenase (predicted) --- --- --- --- --- --- SPCC13B11.04c // ||SPCC777.01c|glutathione-dependent formaldehyde dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.04355526241963 3.88342840050128 -1.58472214690762 2.01810913968343 -3.02686496587332 Max fold change at or above threshold 2 3.88342840050128 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776911_at SPAC343.18.S1 --- 3.88293375932805 --- --- --- --- 2.64957594871521 10.2881278991699 3.90393471717834 1.5773674249649 0.533936023712158 0.24609400331974 0.303710997104645 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC343.18 /DEF=zinc finger protein --- --- --- --- --- --- SPAC343.18 // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.19158954990796 3.88293375932805 1.05336211851084 1.4734186876475 -1.67974557276924 Max fold change at or above threshold 3 3.88293375932805 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774048_at SPBP22H7.08.S1 --- 3.88158113138946 --- --- --- --- 7.1187047958374 27.6318302154541 5.52153825759888 7.03553819656372 0.0952147990465164 0.171387001872063 0.219482004642487 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP22H7.08 /GEN=rps1002 /DEF=40S ribosomal protein S10 --- --- --- --- --- --- SPBP22H7.08 // |rps1002|rps10-2, rps10B|40S ribosomal protein S10|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.28528061412796 3.88158113138946 1.94944311764628 -1.28926115580934 -1.01182092925234 Max fold change at or above threshold 4 3.88158113138946 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772125_at SPAC13G6.06c.S1 --- 3.87936564523736 --- --- --- --- 6.67171621322632 23.4986915588379 25.8820266723633 7.92751884460449 0.5 0.171387001872063 0.0805663987994194 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G6.06c /DEF=glycine dehydrogenase (decarboxylating) (predicted) --- --- --- --- --- --- SPAC13G6.06c // |||glycine cleavage complex subunit P|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.4368615233008 3.52213595540125 1.82082624842915 3.87936564523736 1.18822782493185 Max fold change at or above threshold 4 3.87936564523736 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770215_at SPBC119.06.S1 --- 3.87695914917627 --- --- --- --- 5.45844602584839 9.75982093811035 1.40791940689087 6.42000961303711 0.274170011281967 0.466064006090164 0.56787109375 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC119.06 /GEN=sco1 /DEF=involved in cytochrome c oxidase biogenesis (predicted) --- --- --- --- --- --- SPBC119.06 // |sco1||copper chaperone Sco1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.05370026073745 1.78802188239892 -1.04916887725955 -3.87695914917627 1.17616068431111 Max fold change at or above threshold 3 3.87695914917627 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769405_at SPBC215.15.S1 --- 3.87616169889355 --- --- --- --- 4.3943395614624 17.0331707000732 10.641134262085 15.4103574752808 0.533936023712158 0.274170011281967 0.303710997104645 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC215.15 /GEN=sec13 /DEF=WD repeat protein --- --- --- --- --- --- SPBC215.15 // |sec13||COPII-coated vesicle component|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 3.20773301960437 3.87616169889355 1.8470033089551 2.42155484646791 3.50686542533648 Max fold change at or above threshold 4 3.87616169889355 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770480_at YKR039W.S1 General amino acid permease; localization to the plasma membrane is regulated by nitrogen source 3.87550118602217 1995.78070068359 583.372406005859 GAP1 6865 // amino acid transport // inferred from mutant phenotype /// 15846 // polyamine transport // inferred from mutant phenotype 5774 // vacuolar membrane // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay /// 5887 // integral to plasma membrane // inferred from direct assay 5296 // L-proline permease activity // inferred from genetic interaction /// 15203 // polyamine transporter activity // inferred from mutant phenotype /// 15359 // amino acid permease activity // inferred from mutant phenotype 542.718994140625 1888.25329589844 2103.30810546875 624.025817871094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR039W /GEN=GAP1 /DB_XREF=GI:6322892 /SEG=NC_001143:+514705,516513 /DEF=General amino acid permease; localization to the plasma membrane is regulated by nitrogen source /NOTE=Gap1p; go_component: integral to plasma membrane [goid GO:0005887] [evidence IDA] [pmid 9199164]; go_function: general amino acid permease activity [goid GO:0005281] [evidence IMP] [pmid 6759873]; go_process: amino acid transport [goid GO:0006865] [evidence IMP] [pmid 6759873] --- --- --- --- --- S0001747 // span:97-119,134-156,176-198,208-227,240-262,288-310,323-345,373-395,424-441,451-473,497-519,529-546 // numtm:12 S0001747 // GAP1 SGDID:S0001747, Chr XI from 514705-516513, Verified ORF // sgd // 11 // --- /// GENSCAN00000018450 // cdna:Genscan chromosome:SGD1:XI:514993:516513:1 // ensembl // 11 // --- /// GENEFINDER00000023115 // cdna:GeneFinder chromosome:SGD1:XI:514993:516513:1 // ensembl // 11 // --- /// YKR039W // cdna:known chromosome:SGD1:XI:514705:516513:1 gene:YKR039W // ensembl // 11 // --- --- No cerevisiae_gene 1.42110455933642 3.47924674884176 1.95523435465144 3.87550118602217 1.14981385322475 Max fold change at or above threshold 4 3.87550118602217 Max fold change at or above threshold -0.909871649351092 0.729347903710007 0.991342004021646 -0.810818258380562 1289.57655334473 820.83836740792 0.636517750946186 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774942_at YBR200W-A.S1 Identified by fungal homology and RT-PCR 3.87345736163151 21.4460372924805 11.1220686435699 --- --- --- --- 5.82241678237915 22.5528831481934 20.3391914367676 16.4217205047607 0.10693359375 0.0952147990465164 0.0375977009534836 0.030273400247097 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR200W-A /GEN=BEM1 /DB_XREF=GI:33438771 /SEG=NC_001134:+622940,623104 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ybr200w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028535 // YBR200W-A SGDID:S0028535, Chr II from 622978-623142, Uncharacterized ORF // sgd // 11 // --- /// YBR200W-A // cdna:known chromosome:SGD1:II:622978:623142:1 gene:YBR200W-A // ensembl // 11 // --- --- No cerevisiae_gene 2.20323831314591 3.87345736163151 1.91476200019115 3.49325584151271 2.82043026436361 Max fold change at or above threshold 4 3.87345736163151 Max fold change at or above threshold -1.40976200784574 0.844758741826967 0.546451821525823 0.0185514444929514 16.2840529680252 7.42085268820125 0.455712880741212 APAPPP Called_P_>2EXP 4 0 AAPP 2 2 0 Yes No 1 < x = 2
1778375_at YLR136C.S1 mRNA-binding protein expressed during iron starvation; binds to a sequence element in the 3'-untranslated regions of specific mRNAs to mediate their degradation; involved in iron homeostasis 3.87114047794569 93.1032829284668 353.199615478516 TIS11 6402 // mRNA catabolism // inferred from mutant phenotype /// 6879 // iron ion homeostasis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3729 // mRNA binding // inferred from direct assay 326.318695068359 84.2952346801758 101.911331176758 380.080535888672 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR136C /GEN=TIS11 /DB_XREF=GI:6323165 /SEG=NC_001144:-415802,416659 /DEF=Zinc finger containing homolog of mammalian TIS11, glucose repressible gene /NOTE=Tis11p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 1.89999997615814 --- S0004126 // TIS11 SGDID:S0004126, Chr XII from 416659-415802, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017925 // cdna:Genscan chromosome:SGD1:XII:415802:416659:-1 // ensembl // 11 // --- /// GENEFINDER00000024872 // cdna:GeneFinder chromosome:SGD1:XII:415802:416659:-1 // ensembl // 11 // --- /// YLR136C // cdna:known chromosome:SGD1:XII:415802:416659:-1 gene:YLR136C // ensembl // 11 // --- --- No cerevisiae_gene -2.09117901125556 -3.87114047794569 1.0651289918058 -3.20198638660095 1.16475256132368 Max fold change at or above threshold 4 3.87114047794569 Max fold change at or above threshold 0.679033524520414 -0.913933719553114 -0.797986841335255 1.03288703636795 223.151449203491 151.932477763499 0.680849164573214 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780171_at SPAC13C5.07.S1 --- 3.87059043725962 --- --- --- --- 1.61842513084412 3.43782711029053 5.479332447052 0.418133914470673 0.432372987270355 0.567627012729645 0.129638999700546 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13C5.07 /GEN=rad32 /DEF=exonuclease --- --- --- --- --- --- SPAC13C5.07 // |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.58495788687443 2.12418050410369 -2.31965874380994 3.38559525715852 -3.87059043725962 Max fold change at or above threshold 2 3.87059043725962 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770350_at SPAC24H6.10c.S1 --- 3.87051675627671 --- --- --- --- 15.0211591720581 6.54263305664063 6.31789684295654 3.88091826438904 0.149657994508743 0.5 0.296142578125 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24H6.10c /DEF=phospho-2-dehydro-3-deoxyheptonate aldolase (predicted) --- --- --- --- --- --- SPAC24H6.10c // |||phospho-2-dehydro-3-deoxyheptonate aldolase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.314420454561 -2.29588898567557 -3.55694993217874 -2.37755689043963 -3.87051675627671 Max fold change at or above threshold 4 3.87051675627671 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779163_at YML112W.S1 Gamma subunit of C-terminal domain kinase I (CTDK-I), which phosphorylates the C-terminal repeated domain of the RNA polymerase II large subunit (Rpo21p) to affect both transcription and pre-mRNA 3' end processing 3.86970366543038 176.552070617676 682.26513671875 CTK3 6357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 6468 // protein amino acid phosphorylation // traceable author statement 5634 // nucleus // inferred from physical interaction 4693 // cyclin-dependent protein kinase activity // inferred from direct assay 615.9658203125 159.176483154297 193.927658081055 748.564453125 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML112W /GEN=CTK3 /DB_XREF=GI:6323524 /SEG=NC_001145:+45063,45953 /DEF=Gamma subunit of C-terminal domain kinase I (CTDK-I), which phosphorylates the C-terminal repeated domain of the RNA polymerase II large subunit (Rpo21p) to affect both transcription and pre-mRNA 3' end processing /NOTE=Ctk3p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 7565723]; go_function: cyclin-dependent protein kinase activity [goid GO:0004693] [evidence IDA] [pmid 7565723]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 9110987]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence TAS] [pmid 9110987] --- --- --- --- --- --- S0004580 // CTK3 SGDID:S0004580, Chr XIII from 45063-45953, Verified ORF // sgd // 11 // --- /// GENSCAN00000018623 // cdna:Genscan chromosome:SGD1:XIII:45063:45953:1 // ensembl // 11 // --- /// GENEFINDER00000021924 // cdna:GeneFinder chromosome:SGD1:XIII:45063:45953:1 // ensembl // 11 // --- /// YML112W // cdna:known chromosome:SGD1:XIII:45063:45953:1 gene:YML112W // ensembl // 11 // --- --- No cerevisiae_gene -1.68197714960754 -3.86970366543038 -1.19905197278343 -3.17626596643089 1.21526946534993 Max fold change at or above threshold 4 3.86970366543038 Max fold change at or above threshold 0.627529953302679 -0.908990566097056 -0.792096652415967 1.07355726521034 429.408603668213 297.288146426222 0.692319957929685 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771229_at SPAC644.07.S1 --- 3.86707282773133 --- --- --- --- 4.93344736099243 3.69448447227478 1.63235259056091 5.89287900924683 0.194580003619194 0.850341975688934 0.805419981479645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC644.07 /DEF=Rieske ISP assembly protein --- --- --- --- --- --- D89136 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0540. // gb // 10 // --- /// SPAC644.07 // |||Rieske ISP assembly protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.0362907540158 -1.33535474245877 -3.86707282773133 -3.0222927261672 1.19447489312248 Max fold change at or above threshold 3 3.86707282773133 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776263_at SPAC25A8.03c.S1 --- 3.86618420756231 --- --- --- --- 13.2988157272339 6.8493127822876 5.97538328170776 3.84213590621948 0.00195312988944352 0.334473013877869 0.0561522990465164 0.24609400331974 P A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25A8.03c /DEF=hypothetical protein --- --- --- --- --- --- SPAC25A8.03c // ||SPAC3C7.15c|conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.31098438672069 -1.94162774426433 -3.86618420756231 -2.22560045109493 -3.46130799426078 Max fold change at or above threshold 4 3.86618420756231 Max fold change at or above threshold PPAAMA No 3 0 PAMA 2 1 1 No No x = 1
1779637_at SPCC24B10.06.S1 --- 3.86396702470795 --- --- --- --- 11.3577527999878 3.49372053146362 4.84536695480347 2.93940210342407 0.219482004642487 0.398925989866257 0.366210997104645 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC24B10.06 /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPCC24B10.06 // |||glycoprotein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.49573981617666 -3.25090478694634 -1.21003942812054 -2.3440438889212 -3.86396702470795 Max fold change at or above threshold 4 3.86396702470795 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774728_at YML097C.S1 A guanine nucleotide exchange factor involved in vesicle-mediated vacuolar protein transport; specifically stimulates the intrinsic guanine nucleotide exchange activity of Vps21p/Rab5: similar to mammalian ras inhibitors; binds ubiquitin 3.86387024556975 59.2452068328857 246.041412353516 VPS9 6623 // protein-vacuolar targeting // inferred from mutant phenotype 5829 // cytosol // inferred from direct assay 5085 // guanyl-nucleotide exchange factor activity // inferred from direct assay 223.982696533203 60.5219306945801 57.9684829711914 268.100128173828 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML097C /GEN=VPS9 /DB_XREF=GI:6323541 /SEG=NC_001145:-78335,79690 /DEF=Required for Golgi to vacuole trafficking, shares similarity to mammalian ras inhibitors /NOTE=Vps9p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 8628304]; go_function: guanyl-nucleotide exchange factor activity [goid GO:0005085] [evidence IDA] [pmid 10329739]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 8628304] --- --- --- --- scop // a.1.1.Truncated hemoglobin // All alpha proteins; Globin-like; Globin-like; Truncated hemoglobin // 3.40000009536743 --- S0004563 // VPS9 SGDID:S0004563, Chr XIII from 79690-78335, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018637 // cdna:Genscan chromosome:SGD1:XIII:78335:79690:-1 // ensembl // 11 // --- /// YML097C // cdna:known chromosome:SGD1:XIII:78335:79690:-1 gene:YML097C // ensembl // 11 // --- --- No cerevisiae_gene -1.28683110259044 -3.70085180632318 -1.17449179524075 -3.86387024556975 1.19696803513608 Max fold change at or above threshold 4 3.86387024556975 Max fold change at or above threshold 0.652422325490111 -0.842480526205537 -0.865832651492397 1.05589085220782 152.643309593201 109.345410407915 0.716345909292218 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779285_at SPBC119.15.S1 --- 3.86063715245034 --- --- --- --- 2.39986491203308 2.83164572715759 2.12902069091797 3.11092710494995 0.5 0.334473013877869 0.533936023712158 0.48974609375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC119.15 /DEF=ATP binding --- --- --- --- --- --- SPBC119.15 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.86063715245034 1.17991879999559 -1.75326048636793 -1.12721540108581 1.29629259103359 Max fold change at or above threshold 2 3.86063715245034 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770563_at SPBC725.08.S1 --- 3.86024302541557 --- --- --- --- 1.22226285934448 1.24808704853058 0.621807515621185 4.71823167800903 0.567627012729645 0.845458984375 0.753906011581421 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC725.08 /DEF=transcription factor (predicted) --- --- --- --- --- --- SPBC725.08 // |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.30788391270045 1.02112817957992 -1.546543985942 -1.96566112283709 3.86024302541557 Max fold change at or above threshold 1 3.86024302541557 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777506_x_at SPAC1834.04.S1 --- 3.85848111471187 --- --- --- --- 3.17132902145386 5.5277214050293 4.07146787643433 7.21062135696411 0.633789002895355 0.567627012729645 0.665526986122131 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1834.04 /GEN=hht1 /DEF=histone H3 --- --- --- --- --- --- SPAC1834.04 // |hht1||histone H3|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.0333283765056 1.74302993086954 3.85848111471187 1.28383647640818 2.27369071710462 Max fold change at or above threshold 4 3.85848111471187 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777291_at SPAC1002.16c.S1 --- 3.85773269470502 --- --- --- --- 1.2367399930954 3.55512881278992 1.83339262008667 4.77101230621338 0.725830018520355 0.567627012729645 0.665526986122131 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1002.16c /DEF=membrane transporter --- --- --- --- --- --- SPAC1002.16c // |||nicotinic acid plasma membrane transporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.23956166869102 2.87459678884637 -1.17042583217686 1.48243982593134 3.85773269470502 Max fold change at or above threshold 2 3.85773269470502 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777476_at YPR158W.S1 Hypothetical protein 3.85274951222257 1444.33740234375 385.775665283203 --- --- --- --- 389.996154785156 1386.11730957031 1502.55749511719 381.55517578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR158W /GEN=TPO3 /DB_XREF=GI:6325416 /SEG=NC_001148:+843256,844014 /DEF=Hypothetical ORF /NOTE=Ypr158wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006362 // YPR158W SGDID:S0006362, Chr XVI from 843258-844016, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017301 // cdna:Genscan chromosome:SGD1:XVI:843258:844016:1 // ensembl // 11 // --- /// YPR158W // cdna:known chromosome:SGD1:XVI:843258:844016:1 gene:YPR158W // ensembl // 11 // --- --- No cerevisiae_gene 2.93327899585849 3.55418199016323 -1.13901895335416 3.85274951222257 -1.02212256454554 Max fold change at or above threshold 4 3.85274951222257 Max fold change at or above threshold -0.856519144468841 0.768430810549336 0.958377056904792 -0.870288722985287 915.056533813477 613.016512729472 0.669922010364475 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772782_at SPBC428.13c.S1 --- 3.85168345391113 --- --- --- --- 2.84375905990601 9.48089027404785 2.25603413581848 1.03732407093048 0.665526986122131 0.466064006090164 0.870360970497131 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC428.13c /GEN=mob1 /DEF=Sid2p-Mob1p kinase complex --- --- --- --- --- --- SPBC428.13c // |mob1||maintenance of ploidy protein Mob1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.25861049885182 3.33392881546063 -3.85168345391113 -1.26051242521395 -2.74143745392426 Max fold change at or above threshold 2 3.85168345391113 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770492_at SPBC409.13.S1 --- 3.8513911816907 --- --- --- --- 3.92170476913452 1.58475148677826 15.1040191650391 6.19606685638428 0.219482004642487 0.633789002895355 0.0805663987994194 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC409.13 /DEF=6,7-dimethyl-8-ribityllumazine synthase (predicted) --- --- --- --- --- --- SPBC409.13 // |||6,7-dimethyl-8-ribityllumazine synthase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.81611075160461 -2.47464968599411 1.6941777350378 3.8513911816907 1.57994219890032 Max fold change at or above threshold 3 3.8513911816907 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1779060_at SPAC17H9.11.S1 --- 3.84978970814953 --- --- --- --- 1.15568900108337 1.21149528026581 1.76206517219543 4.44915962219238 0.533936023712158 0.665526986122131 0.753906011581421 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17H9.11 /DEF=cofilintropomyosin-type --- --- --- --- --- --- SPAC17H9.11 // |||cofilin/tropomyosin family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.84956855460687 1.04828831902884 -1.08589112013336 1.5246880177484 3.84978970814953 Max fold change at or above threshold 1 3.84978970814953 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773522_at YBR250W.S1 Hypothetical protein 3.84781516243983 36.8399467468262 14.6177325248718 --- --- --- --- 10.6217317581177 39.2468376159668 34.4330558776855 18.613733291626 0.219482004642487 0.0952147990465164 0.0952147990465164 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR250W /GEN=ARO4 /DB_XREF=GI:6319727 /SEG=NC_001134:+718990,720561 /DEF=Hypothetical ORF /NOTE=Ybr250wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000454 // YBR250W SGDID:S0000454, Chr II from 719028-720599, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021339 // cdna:Genscan chromosome:SGD1:II:719028:720599:1 // ensembl // 11 // --- /// GENEFINDER00000022363 // cdna:GeneFinder chromosome:SGD1:II:719838:720599:1 // ensembl // 11 // --- /// YBR250W // cdna:known chromosome:SGD1:II:719028:720599:1 gene:YBR250W // ensembl // 11 // --- --- No cerevisiae_gene 3.84781516243983 3.69495657673452 1.66739718898698 3.24175536172527 1.75241982338712 Max fold change at or above threshold 4 3.84781516243983 Max fold change at or above threshold -1.1287914113166 1.01005434935992 0.650372302597406 -0.531635240640732 25.728839635849 13.3834362365592 0.520172554455643 APAAAM No 4 0 AAAM 3 0 1 No No x = 1
1769408_at SPBC18E5.06.S1 --- 3.84647781717362 --- --- --- --- 6.39508056640625 22.8830947875977 24.5985355377197 10.7548198699951 0.219482004642487 0.111571997404099 0.274170011281967 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18E5.06 /GEN=rps21 /DEF=40S ribosomal protein S21 --- --- --- --- --- --- SPBC18E5.06 // |rps21||40S ribosomal protein S21|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.81011174327381 3.5782340112811 1.52157752297737 3.84647781717362 1.68173328831709 Max fold change at or above threshold 4 3.84647781717362 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1775746_at YPL172C.S1 Heme A:farnesyltransferase, catalyzes the first step in the conversion of protoheme to the heme A prosthetic group required for cytochrome c oxidase activity; human ortholog is associated with mitochondrial disorders 3.84501202326268 136.929058074951 543.057556152344 COX10 6461 // protein complex assembly // inferred from mutant phenotype /// 6784 // heme a biosynthesis // traceable author statement 5743 // mitochondrial inner membrane // traceable author statement 8495 // protoheme IX farnesyltransferase activity // inferred from sequence similarity 483.153869628906 125.65731048584 148.200805664063 602.961242675781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL172C /GEN=COX10 /DB_XREF=GI:6325085 /SEG=NC_001148:-224352,225740 /DEF=Heme A:farnesyltransferase, catalyzes the first step in the conversion of protoheme to the heme A prosthetic group required for cytochrome c oxidase activity; human ortholog is associated with mitochondrial disorders /NOTE=Cox10p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence TAS] [pmid 8811190]; go_function: protoheme IX farnesyltransferase activity [goid GO:0008495] [evidence ISS] [pmid 8118433]; go_process: heme a biosynthesis [goid GO:0006784] [evidence TAS] [pmid 8811190]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP] [pmid 2167832] --- --- --- --- --- S0006093 // span:240-262,274-296,371-393,419-441 // numtm:4 S0006093 // COX10 SGDID:S0006093, Chr XVI from 225740-224352, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017056 // cdna:Genscan chromosome:SGD1:XVI:224352:225740:-1 // ensembl // 11 // --- /// GENEFINDER00000020734 // cdna:GeneFinder chromosome:SGD1:XVI:224352:225740:-1 // ensembl // 11 // --- /// YPL172C // cdna:known chromosome:SGD1:XVI:224352:225740:-1 gene:YPL172C // ensembl // 11 // --- --- No cerevisiae_gene -1.18076902050753 -3.84501202326268 1.3223524831313 -3.26012984520547 1.24796939562731 Max fold change at or above threshold 4 3.84501202326268 Max fold change at or above threshold 0.597243543242753 -0.894176355704208 -0.800128409113592 1.09706122157505 339.993307113647 239.702151885919 0.705020207370715 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771994_at SPBC29A3.16.S1 --- 3.84500776771539 --- --- --- --- 7.75252676010132 2.01625776290894 7.31068849563599 4.67525339126587 0.194580003619194 0.633789002895355 0.171387001872063 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A3.16 /DEF=involved in ribosome biogenesis and assembly (regulation) (predicted) --- --- --- --- --- --- SPBC29A3.16 // |||ribosome biogenesis regulatory protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.68619714111855 -3.84500776771539 -2.50146985073166 -1.06043729872078 -1.65820461722659 Max fold change at or above threshold 3 3.84500776771539 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770006_at SPBC83.11.S1 --- 3.84280265836508 --- --- --- --- 1.14545381069183 1.48893928527832 4.02279472351074 4.40175294876099 0.780517995357513 0.633789002895355 0.601073980331421 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC83.11 /DEF=phosphate-phosphoenolpyruvate translocator (predicted) --- --- --- --- --- --- SPBC83.11 // |||phosphate-phosphoenolpyruvate translocator |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.89487856033081 1.29986846381787 1.0633844335634 3.51196590029331 3.84280265836508 Max fold change at or above threshold 2 3.84280265836508 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774552_at SPAC11E3.04c.S1 --- 3.84091259556681 --- --- --- --- 12.7974519729614 14.2960338592529 17.5969772338867 3.33187794685364 0.334473013877869 0.0461426004767418 0.171387001872063 0.432372987270355 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11E3.04c /GEN=ubc13 /DEF=ubiquitin conjugating enzyme --- --- --- --- --- --- AF470232 // Schizosaccharomyces pombe ubiquitin conjugating enzyme Spu13 mRNA, complete cds. // gb // 11 // --- /// SPAC11E3.04c // |ubc13|spu13|ubiquitin conjugating enzyme|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.51155408194817 1.11710002033668 -1.94510367067971 1.37503756771784 -3.84091259556681 Max fold change at or above threshold 4 3.84091259556681 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1777032_at YKL155C.S1 Mitochondrial ribosomal protein of the small subunit 3.83865253740908 80.7727394104004 293.177673339844 RSM22 6412 // protein biosynthesis // inferred from direct assay 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // inferred from direct assay 273.101654052734 90.4002914428711 71.1451873779297 313.253692626953 0.00292969006113708 0.00292969006113708 0.00415039015933871 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL155C /GEN=RSM22 /DB_XREF=GI:6322694 /SEG=NC_001143:-159461,161347 /DEF=Mitochondrial ribosomal protein of the small subunit /NOTE=Rsm22p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 11278769]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 11278769]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 11278769] --- --- --- --- --- --- S0001638 // RSM22 SGDID:S0001638, Chr XI from 161347-159461, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018302 // cdna:Genscan chromosome:SGD1:XI:159461:161347:-1 // ensembl // 10 // --- /// GENEFINDER00000023046 // cdna:GeneFinder chromosome:SGD1:XI:159461:160972:-1 // ensembl // 10 // --- /// YKL155C // cdna:known chromosome:SGD1:XI:159461:161347:-1 gene:YKL155C // ensembl // 10 // --- --- No cerevisiae_gene -1.54459194029439 -3.02102625659478 -1.22562948962891 -3.83865253740908 1.14702231926602 Max fold change at or above threshold 4 3.83865253740908 Max fold change at or above threshold 0.694723807803427 -0.779004527054998 -0.934322429701116 1.01860314895269 186.975206375122 123.972212712742 0.663040919254398 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780089_at YER106W.S1 Monopolin, kinetochore associated protein involved in chromosome attachment to meiotic spindle 3.8337624210562 116.434553146362 46.7772388458252 MAM1 45132 // meiotic chromosome segregation // inferred from mutant phenotype 778 // condensed nuclear chromosome kinetochore // inferred from direct assay --- 45.4054718017578 174.073791503906 58.7953147888184 48.1490058898926 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER106W /GEN=MAM1 /DB_XREF=GI:6320953 /SEG=NC_001137:+372322,373230 /DEF=Monopolar microtubule Attachment during Meiosis I /NOTE=Mam1p; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IDA] [pmid 12663816]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiotic chromosome segregation [goid GO:0045132] [evidence IMP] [pmid 11470404] --- --- --- --- --- --- S0000908 // MAM1 SGDID:S0000908, Chr V from 372322-373230, Verified ORF // sgd // 11 // --- /// YER106W // cdna:known chromosome:SGD1:V:372322:373230:1 gene:YER106W // ensembl // 11 // --- --- No cerevisiae_gene -2.55550860812608 3.8337624210562 -1.43203241029459 1.29489492027571 1.06042298382259 Max fold change at or above threshold 4 3.8337624210562 Max fold change at or above threshold -0.584677686921366 1.49346082161251 -0.36841661815909 -0.540366516532055 81.6058959960938 61.9151799429018 0.758709639630272 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776929_at SPAC227.04.S1 --- 3.83358221874496 --- --- --- --- 3.5782573223114 1.54125428199768 4.04101371765137 0.933397829532623 0.334473013877869 0.601073980331421 0.398925989866257 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC227.04 /DEF=autophagy C terminal domain family --- --- --- --- --- --- SPAC227.04 // |||autophagy C terminal domain family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.33964721784927 -2.32165280194614 -1.18478841867132 1.12932451572293 -3.83358221874496 Max fold change at or above threshold 2 3.83358221874496 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775874_at YIL099W.S1 Intracellular sporulation-specific glucoamylase involved in glycogen degradation; induced during starvation of a/a diploids late in sporulation, but dispensable for sporulation 3.832460340459 228.569305419922 298.045669555664 SGA1 5980 // glycogen catabolism // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from expression pattern 324 // vacuole (sensu Fungi) // inferred from direct assay 4339 // glucan 1,4-alpha-glucosidase activity // inferred from direct assay 259.698669433594 233.036422729492 224.102188110352 336.392669677734 0.000244141003349796 0.000244140625 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL099W /GEN=SGA1 /DB_XREF=GI:6322092 /SEG=NC_001141:+178001,179650 /DEF=intracellular sporulation-specific glucoamylase involved in glycogen degradation. Induced during starvation of a/a late in sporulation, but dispensable for sporulation /NOTE=Sga1p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 2493265]; go_function: glucan 1,4-alpha-glucosidase activity [goid GO:0004339] [evidence IDA] [pmid 2493265]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IEP] [pmid 350852] --- --- --- --- --- S0001361 // span:7-25 // numtm:1 S0001361 // SGA1 SGDID:S0001361, Chr IX from 178001-179650, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019104 // cdna:GeneFinder chromosome:SGD1:IX:178001:179650:1 // ensembl // 11 // --- /// GENSCAN00000016402 // cdna:Genscan chromosome:SGD1:IX:178040:179650:1 // ensembl // 11 // --- /// YIL099W // cdna:known chromosome:SGD1:IX:178001:179650:1 gene:YIL099W // ensembl // 11 // --- --- No cerevisiae_gene 3.832460340459 -1.11441235834216 -1.15938130134185 -1.15884040054849 1.29531918824001 Max fold change at or above threshold 4 3.832460340459 Max fold change at or above threshold -0.0707391109772769 -0.593365522223017 -0.768492060809529 1.43259669400982 263.307487487793 51.0158808096763 0.193750209294908 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779516_at YOR294W.S1 Essential protein that binds ribosomal protein L11 and is required for nuclear export of the 60S pre-ribosomal subunit during ribosome biogenesis; mouse homolog shows altered expression in Huntington's disease model mice 3.83186350958057 53.9968185424805 197.698654174805 RRS1 6364 // rRNA processing // traceable author statement /// 7046 // ribosome biogenesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 178.80615234375 46.6629753112793 61.3306617736816 216.591156005859 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR294W /GEN=RRS1 /DB_XREF=GI:6324868 /SEG=NC_001147:+868337,868948 /DEF=Regulator for ribosome synthesis /NOTE=Rrs1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10688653]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: rRNA processing [goid GO:0006364] [evidence TAS] [pmid 12048200]; go_process: ribosome biogenesis [goid GO:0007046] [evidence IMP] [pmid 10688653] --- --- --- --- --- --- S0005820 // RRS1 SGDID:S0005820, Chr XV from 868337-868948, Verified ORF // sgd // 11 // --- /// GENSCAN00000017743 // cdna:Genscan chromosome:SGD1:XV:868337:868948:1 // ensembl // 11 // --- /// GENEFINDER00000022857 // cdna:GeneFinder chromosome:SGD1:XV:868337:868948:1 // ensembl // 11 // --- /// YOR294W // cdna:known chromosome:SGD1:XV:868337:868948:1 gene:YOR294W // ensembl // 11 // --- --- No cerevisiae_gene 1.4230376745996 -3.83186350958057 -1.31915560910521 -2.9154446923069 1.21131825257035 Max fold change at or above threshold 4 3.83186350958057 Max fold change at or above threshold 0.625983652862004 -0.935986566995747 -0.762610309795169 1.07261322392891 125.847736358643 84.6003178245646 0.672243460807824 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770631_at SPAC688.02c.S1 --- 3.83171000260023 --- --- --- --- 0.977590084075928 0.302568554878235 2.33751797676086 1.86503922939301 0.725830018520355 0.943848013877869 0.805419981479645 0.65771484375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC688.02c /DEF=localization spindle pole body (predicted) --- --- --- --- --- --- SPAC688.02c // |mis14||kinetochore protein Mis14p |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -3.83171000260023 -3.23097052986669 -2.55120575023189 2.39110238006395 1.90779270347852 Max fold change at or above threshold 0 3.83171000260023 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779939_at SPBC24C6.08c.S1 --- 3.83002502939329 --- --- --- --- 0.60637229681015 0.508351981639862 0.402207583189011 0.295214027166367 0.976073980331421 0.995850026607513 0.870360970497131 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC24C6.08c /DEF=hypothetical protein --- --- --- --- --- --- SPBC24C6.08c // |||vesicle coat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.83002502939329 -1.1928197758846 -2.16519175799203 -1.507610304118 -2.05400909513162 Max fold change at or above threshold 0 3.83002502939329 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772230_at SPBC577.12.S1 --- 3.83001027872587 --- --- --- --- 2.77686643600464 1.82142984867096 3.18833160400391 8.94010448455811 0.601073980331421 0.850341975688934 0.665526986122131 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC577.12 /DEF=endoribonuclease (predicted) --- --- --- --- --- --- SPBC577.12 // |||endoribonuclease |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 2.08369778987281 -1.524553052664 -3.83001027872587 1.14817607453648 3.21949387577357 Max fold change at or above threshold 3 3.83001027872587 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775120_at SPAC1B3.09c.S1 --- 3.82734142389864 --- --- --- --- 7.4607367515564 3.64487290382385 3.93268394470215 1.94932615756989 0.0952147990465164 0.24609400331974 0.194580003619194 0.456298828125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B3.09c /DEF=involved in ribosome biogenesis and assembly (predicted) --- --- --- --- --- --- SPAC1B3.09c // |||nucleolar complex protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.34827691007724 -2.04691273150548 -1.388161161668 -1.89711068991624 -3.82734142389864 Max fold change at or above threshold 3 3.82734142389864 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778868_s_at SPCC285.07c.S1 --- 3.82641198439771 --- --- --- --- 7.60373878479004 2.32051205635071 4.79949045181274 3.19452095031738 0.018554700538516 0.24609400331974 0.0461426004767418 0.171387001872063 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC285.07c /GEN=wtf18 /DEF=wtf element --- --- --- --- --- --- SPCC576.16c // |wtf22||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPCC285.07c // |wtf18||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPCC548.03c // |wtf4|SPCC548.03|wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPCC162.04c // |wtf13||wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.82641198439771 -3.27675038963075 -1.31525323633604 -1.58428042750208 -2.3802438309364 Max fold change at or above threshold 3 3.82641198439771 Max fold change at or above threshold PAAAPA No 4 0 PAPA 2 2 0 No No 1 < x = 2
1777183_at YOR109W.S1 Phosphatidylinositol 4,5-bisphosphate 5-phosphatase, synaptojanin-like protein with an N-terminal Sac1 domain, plays a role in a TGN (trans Golgi network)-to-early endosome pathway; hyperosmotic stress causes translocation to actin patches 3.82611018266871 448.041702270508 542.600006103516 INP53 6897 // endocytosis // inferred from genetic interaction /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 46856 // phosphoinositide dephosphorylation // inferred from sequence similarity /// 48017 // inositol lipid-mediated signaling // traceable author statement 5624 // membrane fraction // inferred from direct assay /// 30479 // actin cortical patch // inferred from direct assay 4445 // inositol-polyphosphate 5-phosphatase activity // inferred from sequence similarity 514.0908203125 430.354370117188 465.729034423828 571.109191894531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR109W /GEN=INP53 /DB_XREF=GI:6324683 /SEG=NC_001147:+525278,528601 /DEF=Phosphatidylinositol 4,5-bisphosphate 5-phosphatase, synaptojanin-like protein with an N-terminal Sac1 domain, plays a role in a TGN (trans Golgi network)-to-early endosome pathway; hyperosmotic stress causes translocation to actin patches /NOTE=Inp53p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 11094088]; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 9560389]; go_function: inositol-polyphosphate 5-phosphatase activity [goid GO:0004445] [evidence ISS] [pmid 9560389]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9560389]; go_process: dephosphorylation [goid GO:0016311] [evidence ISS] [pmid 9560389]; go_process: endocytosis [goid GO:0006897] [evidence IGI] [pmid 9788876] --- --- --- --- --- --- S0005635 // INP53 SGDID:S0005635, Chr XV from 525278-528601, Verified ORF // sgd // 11 // --- /// GENSCAN00000017541 // cdna:Genscan chromosome:SGD1:XV:525278:528601:1 // ensembl // 11 // --- /// GENEFINDER00000022884 // cdna:GeneFinder chromosome:SGD1:XV:525278:530248:1 // ensembl // 9 // --- /// YOR109W // cdna:known chromosome:SGD1:XV:525278:528601:1 gene:YOR109W // ensembl // 11 // --- --- No cerevisiae_gene -3.82611018266871 -1.19457557773263 1.10305900700759 -1.10384103698517 1.11091108677523 Max fold change at or above threshold 4 3.82611018266871 Max fold change at or above threshold 0.307298538401607 -1.06361969255972 -0.484471996436997 1.24079315059511 495.320854187012 61.0805577635319 0.123315134517778 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777895_at SPCC4G3.10c.S1 --- 3.823835446941 --- --- --- --- 4.8179783821106 1.2599858045578 1.35581505298615 2.59016847610474 0.633789002895355 0.951171875 0.850341975688934 0.2392578125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4G3.10c /GEN=rhp42 /DEF=involved in DNA repair --- --- --- --- --- --- SPCC4G3.10c // |rhp42|rhp4b|DNA repair protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.47925459807822 -3.823835446941 -2.04471876810549 -3.55356607931084 -1.86010231633897 Max fold change at or above threshold 2 3.823835446941 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772228_at YJR039W.S1 Hypothetical protein 3.82379420053676 284.531875610352 505.601211547852 --- --- 5739 // mitochondrion // inferred from direct assay --- 478.582916259766 295.794708251953 273.26904296875 532.619506835938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR039W /GEN=HUL4 /DB_XREF=GI:6322498 /SEG=NC_001142:+503850,507215 /DEF=Hypothetical ORF /NOTE=Yjr039wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003800 // YJR039W SGDID:S0003800, Chr X from 503850-507215, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024163 // cdna:Genscan chromosome:SGD1:X:503877:507215:1 // ensembl // 11 // --- /// GENEFINDER00000024297 // cdna:GeneFinder chromosome:SGD1:X:503877:507215:1 // ensembl // 11 // --- /// YJR039W // cdna:known chromosome:SGD1:X:503850:507215:1 gene:YJR039W // ensembl // 11 // --- --- No cerevisiae_gene -3.82379420053676 -1.61795631533785 1.46343081218489 -1.75132503506625 1.1129095685205 Max fold change at or above threshold 4 3.82379420053676 Max fold change at or above threshold 0.643161374117166 -0.764494529285562 -0.937965159910813 1.05929831507921 395.066543579102 129.852904794388 0.32868615909104 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777986_at YMR130W.S1 Hypothetical protein 3.82250287114652 101.481349945068 447.839889526367 --- --- --- --- 371.837005615234 97.2757949829102 105.686904907227 523.8427734375 0.000732421991415322 0.00122069998178631 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR130W /GEN=POM152 /DB_XREF=GI:6323778 /SEG=NC_001145:+532118,533026 /DEF=Hypothetical ORF /NOTE=Ymr130wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004737 // YMR130W SGDID:S0004737, Chr XIII from 532118-533026, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018823 // cdna:Genscan chromosome:SGD1:XIII:532235:533026:1 // ensembl // 11 // --- /// YMR130W // cdna:known chromosome:SGD1:XIII:532118:533026:1 gene:YMR130W // ensembl // 11 // --- --- No cerevisiae_gene -1.09763554895088 -3.82250287114652 1.06394536272129 -3.51828834368494 1.40879677258255 Max fold change at or above threshold 4 3.82250287114652 Max fold change at or above threshold 0.46405754401912 -0.847086104057315 -0.806919565873928 1.18994812591212 274.660619735718 209.405896169447 0.76241689242142 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775013_at SPAC2H10.02c.S1 --- 3.82243752666297 --- --- --- --- 0.27077305316925 1.03501307964325 0.34781676530838 0.753006339073181 0.919434010982513 0.665526986122131 0.870360970497131 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2H10.02c /DEF=PDZ domain protein --- --- --- --- --- --- SPAC2H10.02c // |||PDZ domain protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.2248344529761 3.82243752666297 1.75387215600537 1.284532420185 2.78095006227412 Max fold change at or above threshold 0 3.82243752666297 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772389_at SPAPB24D3.07c.S1 --- 3.82241967939649 --- --- --- --- 3.33577680587769 1.24863636493683 1.81252777576447 0.872687220573425 0.696289002895355 0.981445014476776 0.805419981479645 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB24D3.07c /DEF=hypothetical protein --- --- --- --- --- --- SPAPB24D3.07c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.45138601507141 -2.67153584466239 -1.72280022011436 -1.84040037922771 -3.82241967939649 Max fold change at or above threshold 1 3.82241967939649 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773414_at SPBC8D2.01.S1 --- 3.82061172953268 --- --- --- --- 1.9343204498291 3.15472435951233 2.8670654296875 2.01497912406921 0.533936023712158 0.5 0.432372987270355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8D2.01 /GEN=gsk31 /DEF=serinethreonine protein kinase --- --- --- --- --- --- D89120 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0446. // gb // 9 // --- /// D89206 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1116. // gb // 11 // --- /// SPBC8D2.01 // |gsk31||serine/threonine protein kinase Gsk31|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.56469556322366 1.63092126735829 3.82061172953268 1.48220809532402 1.0416987134925 Max fold change at or above threshold 2 3.82061172953268 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773326_at SPAC1B3.13.S1 --- 3.82038794182488 --- --- --- --- 6.76760816574097 6.66870784759521 1.77144527435303 8.14221858978271 0.0952147990465164 0.194580003619194 0.24609400331974 0.00805663969367743 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B3.13 /DEF=WD repeat protein --- --- --- --- --- --- SPAC1B3.13 // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.67740903707185 -1.01483050695967 -1.56453020175289 -3.82038794182488 1.20311613651043 Max fold change at or above threshold 3 3.82038794182488 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1779740_at SPBC2F12.07c.S1 --- 3.81916680437448 --- --- --- --- 1.29696786403656 2.65523219108582 2.78970170021057 0.339594453573227 0.665526986122131 0.688720703125 0.567627012729645 0.71875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2F12.07c /GEN=rpl802 /DEF=60S ribosomal protein L8 --- --- --- --- --- --- SPBC2F12.07c // |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein L8|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.5652663134418 2.04726135836699 2.32889306790456 2.15094126660021 -3.81916680437448 Max fold change at or above threshold 2 3.81916680437448 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771170_at YLR316C.S1 Subunit of tRNA-specific adenosine-34 deaminase, forms a heterodimer with Tad3p that converts adenosine to inosine at the wobble position of several tRNAs 3.81915515987473 143.280914306641 403.37809753418 TAD3 6400 // tRNA modification // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8251 // tRNA specific adenosine deaminase activity // inferred from direct assay 376.930847167969 98.69482421875 187.867004394531 429.825347900391 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR316C /GEN=TAD3 /DB_XREF=GI:9755339 /SEG=NC_001144:-765266,766358 /DEF=tRNA-specific adenosine-34 deaminase subunit Tad3p /NOTE=Tad3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: tRNA specific adenosine deaminase activity [goid GO:0008251] [evidence IDA] [pmid 10550050]; go_process: tRNA modification [goid GO:0006400] [evidence IDA] [pmid 10550050] --- --- --- --- --- --- S0004308 // TAD3 SGDID:S0004308, Chr XII from 766358-766250,766181-766130,766073-765266, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YLR316C // cdna:known chromosome:SGD1:XII:765266:766358:-1 gene:YLR316C // ensembl // 11 // --- GENSCAN00000018065 // ensembl // 8 // Cross Hyb Matching Probes /// GENEFINDER00000024608 // ensembl // 7 // Cross Hyb Matching Probes /// YLR317W // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene 1.03777983964402 -3.81915515987473 -1.19828896110007 -2.00637066835 1.14032945599926 Max fold change at or above threshold 4 3.81915515987473 Max fold change at or above threshold 0.664032502346701 -1.11932049614855 -0.547771660691463 1.00305965449332 273.32950592041 156.018479338632 0.570807307514258 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777139_at SPBC16G5.05c.S1 --- 3.81802736185808 --- --- --- --- 7.63422822952271 2.90987110137939 8.82980537414551 1.99952161312103 0.398925989866257 0.601073980331421 0.303710997104645 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16G5.05c /DEF=MSP domain --- --- --- --- --- --- SPBC16G5.05c // |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.27354553128566 -2.62356233783131 1.14177961125504 1.15660746688176 -3.81802736185808 Max fold change at or above threshold 3 3.81802736185808 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776246_at YFL016C.S1 Protein involved in folding of mitochondrially synthesized proteins in the mitochondrial matrix; localizes to the mitochondrial inner membrane; member of the DnaJ family of molecular chaperones 3.81597732672351 5103.052734375 1376.38323974609 MDJ1 6457 // protein folding // inferred from direct assay /// 6508 // proteolysis and peptidolysis // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay 51082 // unfolded protein binding // inferred from mutant phenotype /// 51087 // chaperone binding // inferred from mutant phenotype 1342.35327148438 5083.7158203125 5122.3896484375 1410.41320800781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL016C /GEN=MDJ1 /DB_XREF=GI:14318504 /SEG=NC_001138:-104695,106230 /DEF=involved in protection against heat-induced protein aggregation but not necessary for protein import into the mitochondrion /NOTE=Mdj1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 8168133]; go_function: co-chaperone activity [goid GO:0003767] [evidence IDA] [pmid 8943361]; go_process: protein folding [goid GO:0006457] [evidence IDA] [pmid 8168133]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence IMP] [pmid 7957078] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.00000022906852E-19 --- S0001878 // MDJ1 SGDID:S0001878, Chr VI from 106230-104695, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018539 // cdna:GeneFinder chromosome:SGD1:VI:104695:106230:-1 // ensembl // 11 // --- /// GENSCAN00000023229 // cdna:Genscan chromosome:SGD1:VI:104695:106230:-1 // ensembl // 11 // --- /// YFL016C // cdna:known chromosome:SGD1:VI:104695:106230:-1 gene:YFL016C // ensembl // 11 // --- --- No cerevisiae_gene 1.68119078715358 3.7871668571202 1.17431863679526 3.81597732672351 1.05070195601205 Max fold change at or above threshold 4 3.81597732672351 Max fold change at or above threshold -0.881744315174252 0.856943629928209 0.874916151402495 -0.850115466156451 3239.71798706055 2151.8309592971 0.664203170736318 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769492_at SPAC17A5.10.S1 --- 3.81594447188479 --- --- --- --- 3.79858040809631 12.7122926712036 1.15989017486572 0.995449602603912 0.466064006090164 0.129638999700546 0.633789002895355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A5.10 /DEF=conserved fungal protein --- --- --- --- --- --- SPAC17A5.10 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.66879932847496 3.34659038521564 1.28833162057621 -3.27494834460173 -3.81594447188479 Max fold change at or above threshold 2 3.81594447188479 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769739_at SPAC27D7.11c.S1 --- 3.81523369635182 --- --- --- --- 0.519491791725159 1.50398218631744 1.03746473789215 0.616995751857758 0.99975597858429 0.932372987270355 0.989257991313934 0.985840022563934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27D7.11c /DEF=possibly S. pombe specific --- --- --- --- --- --- SPAC27D7.11c // |||possibly S. pombe specific|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.81523369635182 2.89510288761817 1.44254813136773 1.99707628574241 1.18769105053383 Max fold change at or above threshold 0 3.81523369635182 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775623_at SPBC1306.01c.S1 --- 3.81349892703262 --- --- --- --- 0.260854631662369 0.336754679679871 0.994768857955933 0.580689907073975 0.932372987270355 0.870360970497131 0.828612983226776 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1306.01c /DEF=translation elongation factor G (predicted) --- --- --- --- --- --- SPBC1306.01c // ||SPBC409.22c|translation elongation factor G|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.03834885840909 1.2909668405495 1.76436201369866 3.81349892703262 2.2261054111762 Max fold change at or above threshold 0 3.81349892703262 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779173_at SPAC2F7.07c.S1 --- 3.81103447447303 --- --- --- --- 11.3444337844849 12.0890264511108 11.1421794891357 6.36011648178101 0.194580003619194 0.149657994508743 0.274170011281967 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F7.07c /DEF=zinc finger protein --- --- --- --- --- --- SPAC2F7.07c // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.81103447447303 1.06563506656844 -3.6495821565499 -1.01815213042891 -1.78368333614357 Max fold change at or above threshold 4 3.81103447447303 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775736_at YMR300C.S1 Phosphoribosylpyrophosphate amidotransferase (PRPPAT; amidophosphoribosyltransferase), catalyzes first step of the 'de novo' purine nucleotide biosynthetic pathway 3.81019233140776 87.5018615722656 267.528549194336 ADE4 6144 // purine base metabolism // inferred from mutant phenotype /// 6144 // purine base metabolism // traceable author statement /// 6164 // purine nucleotide biosynthesis // traceable author statement /// 6189 // 'de novo' IMP biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 4044 // amidophosphoribosyltransferase activity // traceable author statement 258.588287353516 67.8675155639648 107.136207580566 276.468811035156 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR300C /GEN=ADE4 /DB_XREF=GI:6323958 /SEG=NC_001145:-865558,867090 /DEF=Phosphoribosylpyrophosphate amidotransferase (PRPPAT; amidophosphoribosyltransferase), catalyzes first step of the 'de novo' purine nucleotide biosynthetic pathway /NOTE=Ade4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: amidophosphoribosyltransferase activity [goid GO:0004044] [evidence TAS]; go_process: purine base metabolism [goid GO:0006144] [evidence IMP,TAS] [pmid 11689683]; go_process: purine nucleotide biosynthesis [goid GO:0006164] [evidence TAS] --- --- --- --- --- --- S0004915 // ADE4 SGDID:S0004915, Chr XIII from 867090-865558, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018966 // cdna:Genscan chromosome:SGD1:XIII:865558:867090:-1 // ensembl // 11 // --- /// GENEFINDER00000021893 // cdna:GeneFinder chromosome:SGD1:XIII:865558:867090:-1 // ensembl // 11 // --- /// YMR300C // cdna:known chromosome:SGD1:XIII:865558:867090:-1 gene:YMR300C // ensembl // 11 // --- --- No cerevisiae_gene 1.55450036059816 -3.81019233140776 1.23821252360764 -2.41364047872478 1.06914668821483 Max fold change at or above threshold 4 3.81019233140776 Max fold change at or above threshold 0.769044351813346 -1.04009782896772 -0.667602235306182 0.938655712460551 177.515205383301 105.420554457036 0.593867743495021 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772619_at SPAC1805.03c.S1 --- 3.80943001803376 --- --- --- --- 9.75737571716309 2.56137418746948 3.89581632614136 4.49324655532837 0.366210997104645 0.753906011581421 0.633789002895355 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1805.03c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC1805.03c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.52598140130512 -3.80943001803376 -2.26159411399981 -2.50457796269552 -2.17156472430657 Max fold change at or above threshold 4 3.80943001803376 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773612_at YPL240C.S1 Cytoplasmic chaperone of the Hsp90 family, redundant in function and nearly identical with Hsp82p, and together they are essential; expressed constitutively at 10-fold higher basal levels that HSP82 and induced 2-3 fold by heat shock /// Cytoplasmic chaperone (Hsp90 family) required for pheromone signaling and negative regulation of Hsf1p; docks with the mitochondrial import receptor Tom70p for preprotein delivery; interacts with co-chaperones Cns1p, Cpr6p, Cpr7p, and Sti1p 3.80925848229311 7417.74389648438 2410.98327636719 HSC82 /// HSP82 6457 // protein folding // inferred from mutant phenotype /// 6950 // response to stress // inferred from mutant phenotype /// 43248 // proteasome assembly // inferred from mutant phenotype /// 43248 // proteasome assembly // inferred from physical interaction /// 43248 // proteasome assembly // inferred from genetic interaction /// 43248 // proteasome assembly // inferred from direct assay 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 51082 // unfolded protein binding // inferred from sequence similarity /// 42623 // ATPase activity, coupled // inferred from direct assay 2541.71484375 9682.048828125 5153.43896484375 2280.25170898438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL240C /GEN=HSP82 /DB_XREF=GI:6325016 /SEG=NC_001148:-96496,98625 /DEF=82 kDa heat shock protein; homolog of mammalian Hsp90 /NOTE=Hsp82p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: ATPase activity, coupled [goid GO:0042623] [evidence IDA] [pmid 12235160]; go_process: protein folding [goid GO:0006457] [evidence IMP] [pmid 7791797]; go_process: response to stress [goid GO:0006950] [evidence IMP] [pmid 2674684] --- --- --- --- --- --- S0006161 // HSP82 SGDID:S0006161, Chr XVI from 98625-96496, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017001 // cdna:Genscan chromosome:SGD1:XVI:96496:97461:-1 // ensembl // 11 // --- /// GENEFINDER00000021008 // cdna:GeneFinder chromosome:SGD1:XVI:96496:98625:-1 // ensembl // 11 // --- /// YPL240C // cdna:known chromosome:SGD1:XVI:96496:98625:-1 gene:YPL240C // ensembl // 11 // --- --- No cerevisiae_gene 1.31603207956611 3.80925848229311 -1.00679467145195 2.02754411161264 -1.11466415472267 Max fold change at or above threshold 4 3.80925848229311 Max fold change at or above threshold -0.691134531626844 1.38879044638943 0.0696408392504276 -0.767296754013009 4914.36358642578 3432.97669860434 0.698559770401756 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773481_at SPBC887.13c.S1 --- 3.80753216747762 --- --- --- --- 1.90462779998779 6.12782096862793 2.72746157646179 2.15278649330139 0.696289002895355 0.696289002895355 0.696289002895355 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC887.13c /DEF=3-oxoacyl-(acyl-carrier-protein)-synthase (putative) --- --- --- --- --- --- SPBC887.13c // |||3-oxoacyl-[acyl-carrier-protein]-synthase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.36795818440448 3.21733252484669 -3.80753216747762 1.43201814888939 1.13029248723304 Max fold change at or above threshold 2 3.80753216747762 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778865_at YLR106C.S1 Huge dynein-related AAA-type ATPase (midasin), forms extended pre-60S particle with the Rix1 complex (Rix1p-Ipi1p-Ipi3p), may mediate ATP-dependent remodeling of 60S subunits and subsequent export from nucleoplasm to cytoplasm 3.80417841138657 777.230560302734 617.151977539063 MDN1 27 // ribosomal large subunit assembly and maintenance // inferred from physical interaction /// 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 27 // ribosomal large subunit assembly and maintenance // RCA /// 6364 // rRNA processing // inferred from mutant phenotype /// 6461 // protein complex assembly // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5654 // nucleoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 16887 // ATPase activity // inferred from sequence similarity 592.198913574219 877.286010742188 677.175109863281 642.105041503906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR106C /GEN=MDN1 /DB_XREF=GI:6323135 /SEG=NC_001144:-349007,363739 /DEF=Midasin, pseudo-hexameric assembly of AAA protomers associated with a C-terminal MIDAS-containing M-domain, associated with 60S pre-ribosomes (large subunit precursor) and their export from the nucleus /NOTE=Mdn1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12102729]; go_function: ATPase activity [goid GO:0016887] [evidence ISS] [pmid 12102729]; go_process: protein complex assembly [goid GO:0006461] [evidence ISS] [pmid 12102729]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 12837249]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IPI] [pmid 12374754]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0004096 // MDN1 SGDID:S0004096, Chr XII from 363739-349007, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017902 // cdna:Genscan chromosome:SGD1:XII:349007:361072:-1 // ensembl // 10 // --- /// GENEFINDER00000024663 // cdna:GeneFinder chromosome:SGD1:XII:349007:363739:-1 // ensembl // 10 // --- /// YLR106C // cdna:known chromosome:SGD1:XII:349007:363739:-1 gene:YLR106C // ensembl // 10 // --- --- No cerevisiae_gene 3.80417841138657 1.4814042893921 1.58207558458378 1.14349265819518 1.0842725759635 Max fold change at or above threshold 4 3.80417841138657 Max fold change at or above threshold -0.839780756833802 1.44048676771831 -0.160099134330384 -0.440606876554119 697.191268920898 125.023530835035 0.179324579076477 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778230_at SPAC343.03.S1 --- 3.803541259719 --- --- --- --- 1.23594236373901 1.08572840690613 1.40750181674957 0.36313185095787 0.466064006090164 0.805419981479645 0.533936023712158 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC343.03 /GEN=apc11 /DEF=anaphase-promoting complex (APC) (PMID 12477395) --- --- --- --- --- --- AB001022 // Schizosaccharomyces pombe mRNA encoding more than 62 a.a. protein, partial cds. // gb // 11 // --- /// SPAC343.03 // |apc11||anaphase-promoting complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.803541259719 -1.13835316076967 -1.21567034175909 1.13880861927214 -3.40356363805279 Max fold change at or above threshold 0 3.803541259719 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775490_at YKR051W.S1 Hypothetical protein 3.80333736773268 255.368583679199 907.629730224609 --- --- --- --- 848.084167480469 222.98420715332 287.752960205078 967.17529296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR051W /GEN=TRK2 /DB_XREF=GI:6322904 /SEG=NC_001143:+530588,531844 /DEF=Hypothetical ORF /NOTE=Ykr051wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001759 // span:7-29,44-66,79-98,143-162,169-191,211-230,243-265 // numtm:7 S0001759 // YKR051W SGDID:S0001759, Chr XI from 530588-531844, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018460 // cdna:Genscan chromosome:SGD1:XI:531347:531844:1 // ensembl // 9 // --- /// YKR051W // cdna:known chromosome:SGD1:XI:530588:531844:1 gene:YKR051W // ensembl // 11 // --- --- No cerevisiae_gene -2.23338779505569 -3.80333736773268 1.39149512008303 -2.94726478878288 1.14042371035187 Max fold change at or above threshold 4 3.80333736773268 Max fold change at or above threshold 0.700381686381847 -0.941903314950749 -0.771740527488328 1.01326215605723 581.499156951904 380.628185619381 0.654563606961278 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769404_at SPCC622.02.S1 --- 3.80091847660292 --- --- --- --- 2.55094909667969 1.37361621856689 8.42407417297363 4.56042051315308 0.601073980331421 0.696289002895355 0.366210997104645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC622.02 /DEF=dubious --- --- --- --- --- --- SPCC622.02 // |||dubious|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.15514975714653 -1.85710467174093 3.80091847660292 3.30232938945681 1.78773481567661 Max fold change at or above threshold 3 3.80091847660292 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774571_at YGR126W.S1 Hypothetical protein 3.79972050631504 61.2108554840088 27.9752941131592 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 19.7686309814453 47.3064384460449 75.1152725219727 36.181957244873 0.00122069998178631 0.00195312988944352 0.000244141003349796 0.000732421875 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR126W /GEN=ASN2 /DB_XREF=GI:6321565 /SEG=NC_001139:+745838,746530 /DEF=Hypothetical ORF /NOTE=Ygr126wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.Arginine repressor (ArgR), N-terminal DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Arginine repressor (ArgR), N-terminal DNA-binding domain // 0.100000001490116 --- S0003358 // YGR126W SGDID:S0003358, Chr VII from 745840-746532, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019439 // cdna:Genscan chromosome:SGD1:VII:745840:746532:1 // ensembl // 11 // --- /// GENEFINDER00000021597 // cdna:GeneFinder chromosome:SGD1:VII:745840:746532:1 // ensembl // 11 // --- /// YGR126W // cdna:known chromosome:SGD1:VII:745840:746532:1 gene:YGR126W // ensembl // 11 // --- --- No cerevisiae_gene 2.73882623458482 2.39300528652927 2.64256474242353 3.79972050631504 1.83027126556377 Max fold change at or above threshold 4 3.79972050631504 Max fold change at or above threshold -1.06631204957334 0.116550137979903 1.31105403414676 -0.361292122553324 44.593074798584 23.2806558146573 0.522068862033182 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779469_at SPAC1687.04.S1 --- 3.79828982630667 --- --- --- --- 13.2184724807739 6.78123426437378 6.06832695007324 5.23250484466553 0.0805663987994194 0.14453125 0.149657994508743 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.04 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC1687.04 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.79828982630667 -1.9492723544767 -2.89216127326623 -2.17827295554904 -2.52622269318107 Max fold change at or above threshold 4 3.79828982630667 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776322_at SPBC3B9.16c.S1 --- 3.79798817855339 --- --- --- --- 2.30580234527588 8.75741004943848 1.06730937957764 1.3217579126358 0.5 0.149657994508743 0.665526986122131 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B9.16c /GEN=nup120 /DEF=nucleoporin --- --- --- --- --- --- SPBC3B9.16c // |nup120||nucleoporin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.0632011729896 3.79798817855339 -2.80894104983752 -2.1603879712819 -1.74449672154996 Max fold change at or above threshold 1 3.79798817855339 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776676_at SPCC1919.09.S1 --- 3.79672170875447 --- --- --- --- 12.0276069641113 5.41469097137451 5.51284265518188 6.15457010269165 0.014160200022161 0.129638999700546 0.030273400247097 0.0561522990465164 P A P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1919.09 /GEN=tif6 /DEF=translation initiation factor --- --- --- --- --- --- SPCC1919.09 // |tif6||translation initiation factor eIF6|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.79672170875447 -2.22129148786087 -2.30857593678254 -2.18174319791365 -1.95425622966763 Max fold change at or above threshold 4 3.79672170875447 Max fold change at or above threshold PAAAPM No 4 0 PAPM 1 2 1 No No 1 < x = 2
1777333_at SPBC577.14c.S1 --- 3.79611594417973 --- --- --- --- 2.10140490531921 7.97717666625977 3.63292503356934 6.46626949310303 0.567627012729645 0.398925989866257 0.432372987270355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC577.14c /GEN=spa1 /DEF=ornithine decarboxylase antizyme (PMID 9769097) --- --- --- --- --- --- D89228 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1358. // gb // 9 // --- /// AF217277 // Schizosaccharomyces pombe ornithine decarboxylase antizyme Spa (spa) mRNA, complete cds. // gb // 11 // --- /// SPBC577.14c // |spa1|spa|ornithine decarboxylase antizyme Spa1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.42236142374349 3.79611594417973 3.04271567363076 1.72880772495269 3.07711734979545 Max fold change at or above threshold 3 3.79611594417973 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779739_at SPAC1F12.09.S1 --- 3.79611213373231 --- --- --- --- 3.25056600570679 4.71394729614258 9.09979057312012 3.24162673950195 0.567627012729645 0.466064006090164 0.149657994508743 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F12.09 /DEF=GPI-anchor transamidase complex (predicted) --- --- --- --- --- --- SPAC1F12.09 // |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.75230363927697 1.45019276269629 -3.79611213373231 2.79944802140435 -1.002757648219 Max fold change at or above threshold 4 3.79611213373231 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780158_at SPAC3A11.14c.S1 --- 3.79537834525953 --- --- --- --- 0.984981656074524 1.46897292137146 1.88661229610443 3.73837804794312 0.533936023712158 0.601073980331421 0.567627012729645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A11.14c /GEN=pkl1 /DEF=kinesin-like protein --- --- --- --- --- --- U63916 // Schizosaccharomyces pombe kinesin-like protein 1 mRNA, complete cds. // gb // 11 // --- /// SPAC3A11.14c // |pkl1|klp1, SPAC3H5.03c|kinesin-like protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.71448956760553 1.4913708415909 -2.95688453401905 1.9153781032057 3.79537834525953 Max fold change at or above threshold 1 3.79537834525953 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775285_at SPBC56F2.01.S1 --- 3.79071249991406 --- --- --- --- 1.50849711894989 4.48427057266235 3.61122846603394 1.45391607284546 0.725830018520355 0.194580003619194 0.0805663987994194 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC56F2.01 /GEN=pof12 /DEF=F-box protein --- --- --- --- --- --- SPBC56F2.01 // |pof12||F-box protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.32970262579409 2.97267427052429 3.79071249991406 2.39392466891009 -1.03754071306029 Max fold change at or above threshold 2 3.79071249991406 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769808_at YOL071W.S1 Non-essential protein of unknown function required for transcriptional induction of the early meiotic-specific transcription factor IME1, also required for sporulation 3.78921406590438 273.995758056641 649.923736572266 EMI5 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay --- 677.967041015625 178.920227050781 369.0712890625 621.880432128906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL071W /GEN=EMI5 /DB_XREF=GI:6324501 /SEG=NC_001147:+196506,196994 /DEF=Non-essential protein of unknown function required for transcriptional induction of the early meiotic-specific transcription factor IME1, also required for sporulation /NOTE=Emi5p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14576278]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 12586695] --- --- --- --- --- --- S0005432 // EMI5 SGDID:S0005432, Chr XV from 196506-196994, Verified ORF // sgd // 11 // --- /// GENSCAN00000017409 // cdna:Genscan chromosome:SGD1:XV:196506:196994:1 // ensembl // 11 // --- /// YOL071W // cdna:known chromosome:SGD1:XV:196506:196994:1 gene:YOL071W // ensembl // 11 // --- --- No cerevisiae_gene -1.08188354945235 -3.78921406590438 1.48708566547579 -1.83695416334814 -1.09018873402193 Max fold change at or above threshold 4 3.78921406590438 Max fold change at or above threshold 0.932506715973512 -1.22188584010005 -0.401000862851427 0.690379986977966 461.959747314453 231.64154209406 0.501432307556405 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772843_at SPBC21C3.06.S1 --- 3.78864099584817 --- --- --- --- 1.20807588100433 4.42771291732788 4.57696580886841 4.25359296798706 0.601073980331421 0.0952147990465164 0.111571997404099 0.018554700538516 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21C3.06 /DEF=sequence orphan --- --- --- --- --- --- SPBC21C3.06 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.67952812664205 3.66509503827434 2.44165056998295 3.78864099584817 3.52096506094537 Max fold change at or above threshold 3 3.78864099584817 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1774143_at SPBC29A3.11c.S1 --- 3.78800686878579 --- --- --- --- 6.31172847747803 8.16951847076416 1.66623997688293 3.97417640686035 0.303710997104645 0.432372987270355 0.432372987270355 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A3.11c /DEF=mitochondrial carrier family --- --- --- --- --- --- SPBC29A3.11c // |||mitochondrial carboxylic acid transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.43372780924087 1.29433933983619 -1.19920256426053 -3.78800686878579 -1.58818528200774 Max fold change at or above threshold 3 3.78800686878579 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775535_at SPBC530.06c.S1 --- 3.78783079053152 --- --- --- --- 0.997379302978516 0.947518169879913 0.595598757266998 3.77790403366089 0.725830018520355 0.366210997104645 0.725830018520355 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC530.06c /DEF=translation initiation factor --- --- --- --- --- --- SPBC530.06c // |||translation initiation factor eIF3 alpha subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.02301270667739 -1.05262287804457 1.49305705622722 -1.67458257897507 3.78783079053152 Max fold change at or above threshold 1 3.78783079053152 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775690_at YLR039C.S1 Protein involved in retrograde transport to the cis-Golgi network; forms heterodimer with Rgp1p that acts as a GTP exchange factor for Ypt6p; involved in transcription of rRNA and ribosomal protein genes 3.7859391974176 217.634185791016 655.918914794922 RIC1 6886 // intracellular protein transport // inferred from genetic interaction /// 6886 // intracellular protein transport // inferred from physical interaction /// 6886 // intracellular protein transport // inferred from mutant phenotype 5634 // nucleus // inferred from sequence similarity /// 5794 // Golgi apparatus // traceable author statement /// 5794 // Golgi apparatus // inferred from direct assay 5085 // guanyl-nucleotide exchange factor activity // inferred from genetic interaction /// 5085 // guanyl-nucleotide exchange factor activity // inferred from physical interaction 632.808044433594 178.618408203125 256.649963378906 679.02978515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR039C /GEN=RIC1 /DB_XREF=GI:6323068 /SEG=NC_001144:-225427,228597 /DEF=Ribosome Control Ric1p binds to Rgp1p, on the Golgi, and the complex catalyses nucleotide exchange on Ypt6p. /NOTE=Ric1p; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 10990452]; go_component: Golgi apparatus [goid GO:0005794] [evidence TAS] [pmid 11689439]; go_component: nucleus [goid GO:0005634] [evidence ISS] [pmid 9099877]; go_function: guanyl-nucleotide exchange factor activity [goid GO:0005085] [evidence IGI,IPI] [pmid 10990452]; go_process: intracellular protein transport [goid GO:0006886] [evidence IGI,IPI] [pmid 10990452] --- --- --- --- --- --- S0004029 // RIC1 SGDID:S0004029, Chr XII from 228597-225427, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017851 // cdna:Genscan chromosome:SGD1:XII:225427:228354:-1 // ensembl // 11 // --- /// GENEFINDER00000024581 // cdna:GeneFinder chromosome:SGD1:XII:225427:228144:-1 // ensembl // 11 // --- /// YLR039C // cdna:known chromosome:SGD1:XII:225427:228597:-1 gene:YLR039C // ensembl // 11 // --- --- No cerevisiae_gene -3.7859391974176 -3.54279298981303 -1.19290206766545 -2.4656463461066 1.07304227740029 Max fold change at or above threshold 4 3.7859391974176 Max fold change at or above threshold 0.766531709105191 -1.00946229453107 -0.704339581391311 0.947270166817187 436.776550292969 255.738271244463 0.585512823600365 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774207_at YGL141W.S1 Protein with similarity to hect domain E3 ubiquitin-protein ligases, not essential for viability 3.78479819258177 327.99072265625 590.88134765625 HUL5 209 // protein polyubiquitination // traceable author statement /// 6513 // protein monoubiquitination // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4842 // ubiquitin-protein ligase activity // traceable author statement 575.195190429688 258.522857666016 397.458587646484 606.567504882813 0.000244141003349796 0.00122069998178631 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL141W /GEN=HUL5 /DB_XREF=GI:6321297 /SEG=NC_001139:+238356,241088 /DEF=Protein with similarity to hect domain E3 ubiquitin-protein ligases, not essential for viability /NOTE=Hul5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 9858558]; go_process: protein monoubiquitination [goid GO:0006513] [evidence TAS] [pmid 9858558]; go_process: protein polyubiquitination [goid GO:0000209] [evidence TAS] [pmid 9858558] --- --- --- --- --- --- S0003109 // HUL5 SGDID:S0003109, Chr VII from 238358-241090, Verified ORF // sgd // 10 // --- /// GENSCAN00000019243 // cdna:Genscan chromosome:SGD1:VII:238358:241090:1 // ensembl // 10 // --- /// YGL141W // cdna:known chromosome:SGD1:VII:238358:241090:1 gene:YGL141W // ensembl // 10 // --- --- No cerevisiae_gene -3.78479819258177 -2.22492972429068 1.14576478051035 -1.44718269602792 1.05454203194865 Max fold change at or above threshold 4 3.78479819258177 Max fold change at or above threshold 0.712200381470125 -1.23610474966686 -0.38131205825349 0.905216426450227 459.43603515625 162.537339610079 0.353775775456536 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777922_at YNL300W.S1 Hypothetical protein 3.78442374987936 123.446357727051 325.802642822266 --- --- 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 311.465911865234 85.8918151855469 161.000900268555 340.139373779297 0.000244141003349796 0.00585938012227416 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL300W /GEN=RPL18B /DB_XREF=GI:6324029 /SEG=NC_001146:+65743,66051 /DEF=Hypothetical ORF /NOTE=Ynl300wp; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005244 // span:79-101 // numtm:1 S0005244 // YNL300W SGDID:S0005244, Chr XIV from 65743-66051, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020573 // cdna:GeneFinder chromosome:SGD1:XIV:65743:66051:1 // ensembl // 11 // --- /// YNL300W // cdna:known chromosome:SGD1:XIV:65743:66051:1 gene:YNL300W // ensembl // 11 // --- --- No cerevisiae_gene 3.78442374987936 -3.62625834827677 -1.09177001245584 -1.93456006361268 1.09205971126134 Max fold change at or above threshold 4 3.78442374987936 Max fold change at or above threshold 0.715608427020906 -1.14321355139947 -0.524284249735938 0.951889374114502 224.624500274658 121.353254533487 0.54024941351056 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1777778_at YNL035C.S1 Hypothetical protein 3.78179337653246 80.7879867553711 247.812728881836 --- --- 5634 // nucleus // inferred from direct assay --- 225.359130859375 59.5905456542969 101.985427856445 270.266326904297 0.000732421991415322 0.00122069998178631 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL035C /GEN=NCE103 /DB_XREF=GI:6324293 /SEG=NC_001146:-568520,569689 /DEF=Hypothetical ORF /NOTE=Ynl035cp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004980 // YNL035C SGDID:S0004980, Chr XIV from 569690-568521, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020009 // cdna:Genscan chromosome:SGD1:XIV:568521:569690:-1 // ensembl // 11 // --- /// GENEFINDER00000020699 // cdna:GeneFinder chromosome:SGD1:XIV:568521:569690:-1 // ensembl // 11 // --- /// YNL035C // cdna:known chromosome:SGD1:XIV:568521:569690:-1 gene:YNL035C // ensembl // 11 // --- --- No cerevisiae_gene 1.15296453360576 -3.78179337653246 1.45188154540658 -2.20971893334203 1.19926947656247 Max fold change at or above threshold 4 3.78179337653246 Max fold change at or above threshold 0.612589516897728 -1.05053098930358 -0.625192268694038 1.06313374109989 164.300357818604 99.6732254740252 0.60665251614406 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-18srRnae_at AFFX-18srRnae --- 3.78142912691524 144.774795532227 211.541748046875 --- --- --- --- 293.81201171875 211.850921630859 77.6986694335938 129.271484375 4.42872878920753E-5 4.42872878920753E-5 4.42872878920753E-5 4.42872878920753E-5 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /GEN=18S rRNA /DB_XREF=gb:Z75578.1 /NOTE=SIF corresponding to nucleotides 1431-1749 of gb:Z75578.1 /DEF=S.cerevisiae 18S rRNA gene. --- --- --- --- --- --- D83552 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:465250-465418(-) /// L10741 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 18S ribosomal RNA, partial. // gb // 0 // chr12:465251-465539(-) /// D23705 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:465250-465418(-) /// L19742 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA fragment. // gb // 0 // chr12:465277-465547(-) /// L22158 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA (18S rRNA) fragment. // gb // 0 // chr12:465277-465545(-) /// D83552 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:456113-456281(-) /// L10741 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 18S ribosomal RNA, partial. // gb // 0 // chr12:456114-456402(-) /// D23705 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:456113-456281(-) /// L22158 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA (18S rRNA) fragment. // gb // 0 // chr12:456140-456408(-) /// L19742 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA fragment. // gb // 0 // chr12:456140-456410(-) S0028843 // sgd // 1 // Negative Strand Matching Probes /// YLR154W-F // ensembl // 1 // Negative Strand Matching Probes AFFX_control cerevisiae_gene -2.18489829894582 -1.38688097015081 -1.54321013280882 -3.78142912691524 -2.27282925650052 Max fold change at or above threshold 4 3.78142912691524 Max fold change at or above threshold 1.21925480169817 0.355197550257335 -1.05907385808857 -0.515378493866932 178.158271789551 94.8560873150697 0.532425951162786 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 No No 3 < x
1772548_at YER085C.S1 Hypothetical protein 3.7812111242152 4.71117222309113 14.8158025741577 --- --- --- --- 15.0304355621338 5.4473123550415 3.97503209114075 14.6011695861816 0.00585938012227416 0.398925989866257 0.334473013877869 0.00585938012227416 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER085C /GEN=RMD7 /DB_XREF=GI:6320929 /SEG=NC_001137:-327615,328136 /DEF=Hypothetical ORF /NOTE=Yer085cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000887 // YER085C SGDID:S0000887, Chr V from 328136-327615, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YER085C // cdna:known chromosome:SGD1:V:327615:328136:-1 gene:YER085C // ensembl // 11 // --- YER084W-A // ensembl // 10 // Negative Strand Matching Probes No cerevisiae_gene 1.03665848294419 -2.7592387919931 -1.14090705872338 -3.7812111242152 -1.02939942402685 Max fold change at or above threshold 4 3.7812111242152 Max fold change at or above threshold 0.897661545882744 -0.735618472337803 -0.986543550131851 0.824500476586911 9.76348739862442 5.86740981349485 0.600954308019234 PPAPAP Called_P_>2EXP 4 0 PAAP 2 2 0 Yes No 1 < x = 2
1771846_at SPAC3G6.13c.S1 --- 3.77920620670526 --- --- --- --- 2.00428748130798 1.44034922122955 5.1732292175293 7.19839191436768 0.567627012729645 0.753906011581421 0.398925989866257 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G6.13c /GEN=rpl4101 /DEF=60S ribosomal protein L41 --- --- --- --- --- --- SPAC3G6.13c // |rpl4101|rpl41-1|60S ribosomal protein L41|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.82165821182514 -1.39152884020517 -3.77920620670526 2.58108143955142 3.59149671965723 Max fold change at or above threshold 2 3.77920620670526 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
AFFX-r2-TagH_at AFFX-r2-TagH --- 3.77820195747996 --- --- --- --- 7.95915746688843 21.6928997039795 30.0713043212891 12.0334568023682 0.334473013877869 0.274170011281967 0.129638999700546 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Clone 76E7, synthetic insert (848 bp)+ poly A tail (21 bp), target sequence 1-848 --- --- --- --- --- --- AFFX-r2-TagH // --- // unknown // --- // --- /// AFFX-r2-TagH // --- // unknown // --- // --- /// AFFX-r2-TagH // --- // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-TagH // --- // unknown // --- // --- /// AFFX-r2-TagH // --- // affx // --- // --- /// AFFX-r2-TagH // --- // affx // --- // --- /// AFFX-r2-TagH // --- // affx // --- // --- /// AFFX-r2-TagH // --- // affx // --- // --- /// AFFX-r2-TagH // --- // affx // --- // --- /// AFFX-r2-TagH // --- // affx // --- // --- /// AFFX-r2-TagH // --- // affx // --- // --- /// AFFX-r2-TagH // --- // affx // --- // --- /// AFFX-r2-TagH // --- // affx // --- // --- /// AFFX-r2-TagH // --- // affx // --- // --- /// AFFX-r2-TagH // --- // affx // --- // --- /// AFFX-r2-TagH // --- // affx // --- // --- --- AFFX_control No 2.26624576739758 2.72552714206573 2.85589552038955 3.77820195747996 1.51190083277402 Max fold change at or above threshold 4 3.77820195747996 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772889_at SPBC1773.04.S1 --- 3.77815826268804 --- --- --- --- 4.33797740936279 10.9930486679077 1.14817249774933 5.2855110168457 0.129638999700546 0.0676269978284836 0.366210997104645 0.0239257998764515 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1773.04 /DEF=cinnamoyl-CoA reductase (predicted) --- --- --- --- --- --- SPBC1773.04 // |||cinnamoyl-CoA reductase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.21058867601483 2.53414152046552 2.21277446584177 -3.77815826268804 1.21842751081133 Max fold change at or above threshold 3 3.77815826268804 Max fold change at or above threshold APAPAP No 4 0 AAAP 3 1 0 No No x = 1
1773385_at YJL072C.S1 Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p), which binds to DNA replication origins and facilitates assembly of the DNA replication machinery 3.77806910020676 48.7458419799805 144.853378295898 PSF2 6261 // DNA-dependent DNA replication // inferred from mutant phenotype 811 // GINS complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay 3677 // DNA binding // inferred from physical interaction 137.377166748047 36.3617401123047 61.1299438476563 152.32958984375 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL072C /GEN=PSF2 /DB_XREF=GI:6322389 /SEG=NC_001142:-305137,305778 /DEF=Partner of Sld Five 2 /NOTE=Psf2p; go_component: GINS complex [goid GO:0000811] [evidence IPI] [pmid 12730134]; go_function: DNA binding [goid GO:0003677] [evidence IPI] [pmid 12730134]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence IMP] [pmid 12730134] --- --- --- --- --- --- S0003608 // PSF2 SGDID:S0003608, Chr X from 305778-305137, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024083 // cdna:Genscan chromosome:SGD1:X:305137:305778:-1 // ensembl // 11 // --- /// YJL072C // cdna:known chromosome:SGD1:X:305137:305778:-1 gene:YJL072C // ensembl // 11 // --- --- No cerevisiae_gene 1.22202551329257 -3.77806910020676 1.68562258764988 -2.24729744706471 1.10884212747761 Max fold change at or above threshold 4 3.77806910020676 Max fold change at or above threshold 0.715264017835291 -1.06534343995406 -0.628752220612439 0.978831642731213 96.7996101379395 56.7308792254268 0.586065162293374 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775527_at SPAC4A8.10.S1 --- 3.77806909753701 --- --- --- --- 6.84363555908203 16.6530838012695 20.3222312927246 1.81141090393066 0.334473013877869 0.0805663987994194 0.111571997404099 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4A8.10 /DEF=DUF676 --- --- --- --- --- --- SPAC4A8.10 // |||DUF676|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.37071213889716 2.43336800411144 -2.09300874717796 2.96950810972911 -3.77806909753701 Max fold change at or above threshold 3 3.77806909753701 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773391_at SPCC24B10.12.S1 --- 3.77476351343151 --- --- --- --- 6.85954999923706 1.81721317768097 3.03391981124878 3.35196232795715 0.466064006090164 0.633789002895355 0.633789002895355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC24B10.12 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC24B10.12 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.56646249124647 -3.77476351343151 -1.22690627362733 -2.2609529671167 -2.04642813018057 Max fold change at or above threshold 3 3.77476351343151 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769597_at YMR049C.S1 Protein required for maturation of the 25S and 5.8S ribosomal RNAs; constituent of 66S pre-ribosomal particles; homologous to mammalian Bop1 3.77464763072483 465.476776123047 543.569076538086 ERB1 6364 // rRNA processing // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 502.525177001953 453.634735107422 477.318817138672 584.612976074219 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR049C /GEN=ERB1 /DB_XREF=GI:6323693 /SEG=NC_001145:-368093,370516 /DEF=Protein required for maturation of the 25S and 5.8S ribosomal RNAs; homologous to mammalian Bop1 /NOTE=Erb1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 11522832] --- --- --- --- --- --- S0004652 // ERB1 SGDID:S0004652, Chr XIII from 370516-368093, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018756 // cdna:Genscan chromosome:SGD1:XIII:368093:370513:-1 // ensembl // 11 // --- /// GENEFINDER00000021840 // cdna:GeneFinder chromosome:SGD1:XIII:368093:370513:-1 // ensembl // 11 // --- /// YMR049C // cdna:known chromosome:SGD1:XIII:368093:370516:-1 gene:YMR049C // ensembl // 11 // --- --- No cerevisiae_gene 3.77464763072483 -1.10777490811623 -1.25112743394098 -1.05280822577744 1.16335061968835 Max fold change at or above threshold 4 3.77464763072483 Max fold change at or above threshold -0.0350462947232063 -0.892725890077092 -0.477238667917971 1.40501085271827 504.522926330566 57.0031538110203 0.112984268575481 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779376_at SPCC613.05c.S1 --- 3.77406675869333 --- --- --- --- 7.21658229827881 2.61054849624634 6.61886882781982 3.41613745689392 0.129638999700546 0.366210997104645 0.129638999700546 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC613.05c /GEN=rpl35 /DEF=60S ribosomal protein L35 --- --- --- --- --- --- SPCC613.05c // |rpl35||60S ribosomal protein L35|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.28860444091453 -2.76439311840228 -3.77406675869333 -1.09030447437585 -2.11249763492842 Max fold change at or above threshold 4 3.77406675869333 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775720_at YML027W.S1 Homeodomain-containing transcriptional repressor, binds to Mcm1p and to early cell cycle boxes (ECBs) in the promoters of cell cycle-regulated genes expressed in M/G1 phase; expression is cell cycle-regulated; potential Cdc28p substrate 3.77354289990942 81.4935188293457 319.474411010742 YOX1 83 // G1/S-specific transcription in mitotic cell cycle // inferred from physical interaction /// 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 7346 // regulation of mitotic cell cycle // inferred from mutant phenotype 5634 // nucleus // inferred from curator /// 5634 // nucleus // inferred from direct assay 3677 // DNA binding // inferred from direct assay /// 16566 // specific transcriptional repressor activity // inferred from direct assay /// 16566 // specific transcriptional repressor activity // inferred from mutant phenotype /// 16566 // specific transcriptional repressor activity // inferred from genetic interaction 294.893890380859 78.1477508544922 84.8392868041992 344.054931640625 0.00122069998178631 0.0375977009534836 0.0239257998764515 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML027W /GEN=YOX1 /DB_XREF=GI:6323614 /SEG=NC_001145:+221406,222563 /DEF=Homeodomain-containing transcriptional repressor, binds to Mcm1p and to early cell cycle boxes (ECBs) in the promoters of cell cycle-regulated genes expressed in M/G1 phase; expression is cell cycle-regulated; potential Cdc28p substrate /NOTE=Yox1p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 12464633]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 8096171]; go_function: specific transcriptional repressor activity [goid GO:0016566] [evidence IDA] [pmid 12464633]; go_process: negative regulation of transcription from Pol II promoter, mitotic [goid GO:0007070] [evidence IDA] [pmid 12464633]; go_process: regulation of mitotic cell cycle [goid GO:0007346] [evidence IMP] [pmid 12464633] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 1.0000000116861E-7 --- S0004489 // YOX1 SGDID:S0004489, Chr XIII from 221406-222563, Verified ORF // sgd // 11 // --- /// GENSCAN00000018695 // cdna:Genscan chromosome:SGD1:XIII:221424:222563:1 // ensembl // 11 // --- /// GENEFINDER00000021831 // cdna:GeneFinder chromosome:SGD1:XIII:221424:222563:1 // ensembl // 11 // --- /// YML027W // cdna:known chromosome:SGD1:XIII:221406:222563:1 gene:YML027W // ensembl // 11 // --- --- No cerevisiae_gene 1.20789855577149 -3.77354289990942 -1.79894843496275 -3.47591194468013 1.16670756113758 Max fold change at or above threshold 4 3.77354289990942 Max fold change at or above threshold 0.679778909821832 -0.880856306403155 -0.832675302226709 1.03375269880803 200.483964920044 138.883281162047 0.69274009628369 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1775371_at SPBC3B9.04.S1 --- 3.77170160100543 --- --- --- --- 3.67450189590454 6.21156597137451 2.60409426689148 3.27643752098084 0.432372987270355 0.06494140625 0.633789002895355 0.219482004642487 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B9.04 /DEF=methyltransferase (predicted) --- --- --- --- --- --- SPBC3B9.04 // |||mitochondrial methyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.5960479013887 1.69045115429051 -3.77170160100543 -1.41104795729642 -1.12149304614377 Max fold change at or above threshold 4 3.77170160100543 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
AFFX-r2-Bs-dap-3_at AFFX-r2-Bs-dap-3 --- 3.76886868754314 --- --- --- --- 0.825955629348755 0.470290273427963 0.977480947971344 0.219152137637138 0.850341975688934 0.994140982627869 0.870360970497131 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2634-3089 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. --- --- --- --- --- --- AFFX-r2-Bs-dap-3 // --- // unknown // --- // --- /// AFFX-r2-Bs-dap-3 // --- // unknown // --- // --- /// AFFX-r2-Bs-dap-3 // B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2634-3089 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // --- // --- /// AFFX-r2-Bs-dap-3 // --- // unknown // --- // --- /// AFFX-r2-Bs-dap-3 // --- // unknown // --- // --- /// AFFX-r2-Bs-dap-3 // --- // gb // --- // --- /// L38424 // Bacillus subtilis /REF=L38424 /DEF=B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1439-1846 of L38424 /LEN=1931 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-r2-Bs-dap-3 // B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2634-3089 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-dap-3 // --- // unknown // --- // --- /// AFFX-r2-Bs-dap-3 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-3 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-dap-3 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-3 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-3 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-3 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-3 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-3 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-3 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-3 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-3 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-3 // --- // affx // --- // --- /// AFFX-r2-Bs-dap-3 // --- // affx // --- // --- 50812173 // gb // 11 // Negative Strand Matching Probes AFFX_control No 2.46384921206509 -1.75626772658582 -1.93515680270674 1.18345455038797 -3.76886868754314 Max fold change at or above threshold 0 3.76886868754314 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774502_at YNR026C.S1 Guanine nucleotide exchange factor (GEF); glycosylated integral membrane protein of the endoplasmic reticulum, important for the initiation of transport vesicle budding from the endoplasmic reticulum through activation of the GTPase Sar1p 3.76880358520686 86.3627815246582 264.328536987305 SEC12 6888 // ER to Golgi transport // inferred from direct assay /// 30433 // ER-associated protein catabolism // inferred from mutant phenotype 299 // integral to membrane of membrane fraction // inferred from direct assay /// 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay 5085 // guanyl-nucleotide exchange factor activity // inferred from direct assay 240.140808105469 63.7180480957031 109.007514953613 288.516265869141 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR026C /GEN=SEC12 /DB_XREF=GI:6324353 /SEG=NC_001146:-673273,674688 /DEF=Required for recruitment of Sar1p and vesicle formation at the endoplasmic reticulum. /NOTE=Sec12p; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA] [pmid 9275186]; go_component: integral to membrane of membrane fraction [goid GO:0000299] [evidence IDA] [pmid 3047151]; go_function: guanyl-nucleotide exchange factor activity [goid GO:0005085] [evidence IDA] [pmid 8377826]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IDA] [pmid 1907973]; go_process: ER-associated protein catabolism [goid GO:0030433] [evidence IMP] [pmid 12538638] --- --- --- --- --- S0005309 // span:355-373 // numtm:1 S0005309 // SEC12 SGDID:S0005309, Chr XIV from 674689-673274, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020056 // cdna:Genscan chromosome:SGD1:XIV:673274:674689:-1 // ensembl // 11 // --- /// YNR026C // cdna:known chromosome:SGD1:XIV:673274:674689:-1 gene:YNR026C // ensembl // 11 // --- GENEFINDER00000020405 // ensembl // 3 // Cross Hyb Matching Probes No cerevisiae_gene 1.57099996009625 -3.76880358520686 1.55547778136149 -2.20297479680789 1.20144621876356 Max fold change at or above threshold 4 3.76880358520686 Max fold change at or above threshold 0.609834147314226 -1.05060842173204 -0.624356396788536 1.06513067120635 175.345659255981 106.250443886837 0.605948526685371 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776612_at SPAC4G8.02c.S1 --- 3.76774368798647 --- --- --- --- 0.302809029817581 0.341546654701233 1.1409068107605 0.214595332741737 0.904784977436066 0.7998046875 0.888427972793579 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G8.02c /DEF=translocon (gamma subunit) --- --- --- --- --- --- SPAC4G8.02c // |sss1||translocon |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- AB005904 // gb // 2 // Cross Hyb Matching Probes No No -1.36297275143739 1.12792757503628 -1.04465606422373 3.76774368798647 -1.41106997038937 Max fold change at or above threshold 0 3.76774368798647 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770115_at YLR313C.S1 Identified by fungal homology and RT-PCR /// Protein involved in shmoo formation and bipolar bud site selection; homologous to Spa2p, localizes to sites of polarized growth in a cell cycle dependent- and Spa2p-dependent manner, interacts with MAPKKs Mkk1p, Mkk2p, and Ste7p 3.76589834015308 19.3727564811707 66.8021011352539 SPH1 7015 // actin filament organization // inferred from physical interaction /// 7121 // bipolar bud site selection // traceable author statement /// 7124 // pseudohyphal growth // inferred from mutant phenotype /// 7266 // Rho protein signal transduction // inferred from physical interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction 131 // incipient bud site // inferred from direct assay /// 133 // polarisome // traceable author statement /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 5937 // mating projection // inferred from direct assay 5519 // cytoskeletal regulatory protein binding // inferred from physical interaction 56.4970550537109 15.0022783279419 23.7432346343994 77.1071472167969 0.000732421991415322 0.0805663987994194 0.00122069998178631 0.000244141003349796 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR313C /GEN=SPH1 /DB_XREF=GI:42742288 /SEG=NC_001144:-760357,762342 /DEF=SPa2-Homolog; protein involved in shmoo formation and required for bipolar bud site selection (GB:AF008236). /NOTE=Sph1p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 9214378]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 9214378]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 9214378]; go_component: polarisome [goid GO:0000133] [evidence TAS] [pmid 10639324]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 11923536]; go_function: cytoskeletal regulatory protein binding [goid GO:0005519] [evidence IPI] [pmid 10639324]; go_process: Rho protein signal transduction [goid GO:0007266] [evidence IPI] [pmid 10639324]; go_process: actin filament organization [goid GO:0007015] [evidence IPI] [pmid 10639324]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IMP,IPI] [pmid 10639324]; go_process: polar budding [goid GO:0007121] [evidence TAS] [pmid 10652251]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 9443897] --- --- --- --- --- --- S0004305 // SPH1 SGDID:S0004305, Chr XII from 762342-760357, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018063 // cdna:Genscan chromosome:SGD1:XII:760357:762342:-1 // ensembl // 10 // --- /// GENEFINDER00000024746 // cdna:GeneFinder chromosome:SGD1:XII:760357:761979:-1 // ensembl // 10 // --- /// YLR313C // cdna:known chromosome:SGD1:XII:760357:762342:-1 gene:YLR313C // ensembl // 10 // --- --- No cerevisiae_gene -1.1447259805137 -3.76589834015308 -1.38167645384521 -2.37950118944019 1.36479940668575 Max fold change at or above threshold 4 3.76589834015308 Max fold change at or above threshold 0.464510738176079 -0.972872304010404 -0.670084739917006 1.17844630575133 43.0874288082123 28.868280415114 0.669993109674992 PPAPPP Called_P_>2EXP 1 0 PAPP 1 3 0 Yes Yes 2 < x = 3
1774258_at YBL084C.S1 Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition 3.76513928847098 559.3974609375 1198.58843994141 CDC27 22 // mitotic spindle elongation // traceable author statement /// 70 // mitotic sister chromatid segregation // traceable author statement /// 7091 // mitotic metaphase/anaphase transition // traceable author statement /// 8054 // cyclin catabolism // traceable author statement /// 16567 // protein ubiquitination // inferred from physical interaction /// 31145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from direct assay /// 31145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from physical interaction 5680 // anaphase-promoting complex // traceable author statement 4842 // ubiquitin-protein ligase activity // traceable author statement /// 5515 // protein binding // traceable author statement 1205.1865234375 565.664489746094 553.130432128906 1191.99035644531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL084C /GEN=CDC27 /DB_XREF=GI:6319387 /SEG=NC_001134:-67166,69442 /DEF=Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition /NOTE=Cdc27p; go_component: anaphase-promoting complex [goid GO:0005680] [evidence TAS] [pmid 10465783]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 10465783]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 10465783]; go_process: cyclin catabolism [goid GO:0008054] [evidence TAS] [pmid 10465783]; go_process: mitotic metaphase/anaphase transition [goid GO:0007091] [evidence TAS] [pmid 10465783]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence TAS] [pmid 10465783]; go_process: mitotic spindle elongation [goid GO:0000022] [evidence TAS] [pmid 10465783]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10465783] --- --- --- --- --- --- S0000180 // CDC27 SGDID:S0000180, Chr II from 69442-67166, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021074 // cdna:Genscan chromosome:SGD1:II:67166:68032:-1 // ensembl // 11 // --- /// GENEFINDER00000022397 // cdna:GeneFinder chromosome:SGD1:II:67166:68854:-1 // ensembl // 11 // --- /// YBL084C // cdna:known chromosome:SGD1:II:67166:69442:-1 gene:YBL084C // ensembl // 11 // --- --- No cerevisiae_gene -3.76513928847098 -2.13056775753851 -1.12764444931767 -2.17884689294519 -1.01107069945728 Max fold change at or above threshold 4 3.76513928847098 Max fold change at or above threshold 0.883725491563005 -0.848871255806676 -0.882828596312261 0.847974360555932 878.992950439453 369.1118747985 0.419925864722763 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775769_at YAL065C.S1 Hypothetical protein 3.76484534562731 69.7277698516846 59.2848320007324 --- --- --- --- 49.8913269042969 59.3839378356934 80.0716018676758 68.678337097168 0.00195312988944352 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL065C /GEN=SEO1 /DB_XREF=GI:6319252 /SEG=NC_001133:-11566,11952 /DEF=Hypothetical ORF /NOTE=Yal065cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001817 // span:105-127 // numtm:1 S0001817 // YAL065C SGDID:S0001817, Chr I from 11952-11566, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018235 // cdna:GeneFinder chromosome:SGD1:I:11566:13308:-1 // ensembl // 11 // --- /// GENSCAN00000020321 // cdna:Genscan chromosome:SGD1:I:11566:11952:-1 // ensembl // 11 // --- /// YAL065C // cdna:known chromosome:SGD1:I:11566:11952:-1 gene:YAL065C // ensembl // 11 // --- --- No cerevisiae_gene 3.76484534562731 1.19026575399779 -1.48710835481306 1.60492027043642 1.37655863971926 Max fold change at or above threshold 4 3.76484534562731 Max fold change at or above threshold -1.13261418365042 -0.396966910883773 1.20626150909758 0.32331958543661 64.5063009262085 12.9037533106 0.200038649330724 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770133_at YER111C.S1 DNA binding component of the SBF complex (Swi4p-Swi6p), a transcriptional activator that in concert with MBF (Mbp1-Swi6p) regulates late G1-specific transcription of targets including cyclins and genes required for DNA synthesis and repair 3.76417134754073 46.9559440612793 132.194396972656 SWI4 82 // G1/S transition of mitotic cell cycle // inferred from genetic interaction /// 6350 // transcription // traceable author statement /// 7049 // cell cycle // traceable author statement 5634 // nucleus // inferred from direct assay 3700 // transcription factor activity // traceable author statement 136.033905029297 36.1391372680664 57.7727508544922 128.354888916016 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER111C /GEN=SWI4 /DB_XREF=GI:6320957 /SEG=NC_001137:-382591,385872 /DEF=Involved in cell cycle dependent gene expression /NOTE=Swi4p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10490612]; go_function: transcription factor activity [goid GO:0003700] [evidence TAS] [pmid 7917338]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IGI] [pmid 12518319]; go_process: cell cycle [goid GO:0007049] [evidence TAS] [pmid 7917338]; go_process: transcription [goid GO:0006350] [evidence TAS] [pmid 7917338] --- --- --- --- --- --- S0000913 // SWI4 SGDID:S0000913, Chr V from 385872-382591, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016894 // cdna:Genscan chromosome:SGD1:V:382591:385872:-1 // ensembl // 11 // --- /// GENEFINDER00000019642 // cdna:GeneFinder chromosome:SGD1:V:382591:385692:-1 // ensembl // 11 // --- /// YER111C // cdna:known chromosome:SGD1:V:382591:385872:-1 gene:YER111C // ensembl // 11 // --- --- No cerevisiae_gene -1.71307711944371 -3.76417134754073 -1.59756556808832 -2.35463783561069 -1.05982644041168 Max fold change at or above threshold 4 3.76417134754073 Max fold change at or above threshold 0.927378298159872 -1.06665448585625 -0.634818708118835 0.774094895815214 89.5751705169678 50.0968532523499 0.559271648194745 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776043_at YGL113W.S1 Protein involved in the initiation of DNA replication, required for proper assembly of replication proteins at the origins of replication; interacts with Cdc45p 3.76396741149652 67.5124244689941 242.74600982666 SLD3 6268 // DNA unwinding // inferred from mutant phenotype /// 6270 // DNA replication initiation // inferred from mutant phenotype /// 6270 // DNA replication initiation // inferred from physical interaction 790 // nuclear chromatin // inferred from direct assay 3682 // chromatin binding // inferred from direct assay 242.31071472168 64.3764114379883 70.6484375 243.181304931641 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL113W /GEN=SLD3 /DB_XREF=GI:6321325 /SEG=NC_001139:+295933,297939 /DEF=synthetic lethality with dpb11-1; Sld3p interacts with Cdc45 and is required for initiation of DNA replication. /NOTE=Sld3p; go_component: nuclear chromatin [goid GO:0000790] [evidence IDA] [pmid 11296242]; go_function: chromatin binding [goid GO:0003682] [evidence IDA] [pmid 11296242]; go_process: DNA replication initiation [goid GO:0006270] [evidence IMP,IPI] [pmid 11296242]; go_process: DNA unwinding [goid GO:0006268] [evidence IMP] [pmid 11296242] --- --- --- --- --- --- S0003081 // SLD3 SGDID:S0003081, Chr VII from 295935-297941, Verified ORF // sgd // 10 // --- /// GENSCAN00000019266 // cdna:Genscan chromosome:SGD1:VII:295935:297941:1 // ensembl // 10 // --- /// YGL113W // cdna:known chromosome:SGD1:VII:295935:297941:1 gene:YGL113W // ensembl // 10 // --- --- No cerevisiae_gene -2.65544279174011 -3.76396741149652 -1.03307200464854 -3.42980996177983 1.00359286716215 Max fold change at or above threshold 4 3.76396741149652 Max fold change at or above threshold 0.861441675765669 -0.896729824638467 -0.83475584172164 0.870043990594439 155.129217147827 101.204179025079 0.652386319519928 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777267_at SPBC106.05c.S1 --- 3.76392115257825 --- --- --- --- 1.02729046344757 0.792407155036926 1.99827218055725 3.85726428031921 0.696289002895355 0.989257991313934 0.725830018520355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC106.05c /GEN=tim11 /DEF=FO-ATPase subunit E --- --- --- --- --- --- SPBC106.05c // |tim11||FO-ATPase subunit E|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.76392115257825 -1.29641745019289 -1.61560547261858 1.94518712249219 3.75479420627959 Max fold change at or above threshold 1 3.76392115257825 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774992_at YKL105C.S1 Hypothetical protein 3.76170394693323 348.769165039063 699.602722167969 --- --- --- --- 648.195556640625 306.877014160156 390.661315917969 751.009887695313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL105C /GEN=AAT1 /DB_XREF=GI:6322744 /SEG=NC_001143:-238831,242229 /DEF=Hypothetical ORF /NOTE=Ykl105cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001588 // YKL105C SGDID:S0001588, Chr XI from 242229-238831, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018338 // cdna:Genscan chromosome:SGD1:XI:238831:240276:-1 // ensembl // 11 // --- /// YKL105C // cdna:known chromosome:SGD1:XI:238831:242229:-1 gene:YKL105C // ensembl // 11 // --- GENEFINDER00000023079 // ensembl // 2 // Cross Hyb Matching Probes No cerevisiae_gene -3.76170394693323 -2.11223234954423 1.20247784470787 -1.65922636879853 1.15861622314651 Max fold change at or above threshold 4 3.76170394693323 Max fold change at or above threshold 0.591462700861991 -1.03645292636737 -0.636844475104139 1.08183470060952 524.185943603516 209.665990528869 0.399984000119347 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779941_at SPBC12C2.09c.S1 --- 3.76152135043631 --- --- --- --- 1.51181650161743 3.03880739212036 1.83520662784576 0.885221838951111 0.567627012729645 0.366210997104645 0.753906011581421 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12C2.09c /DEF=ADIPOR family --- --- --- --- --- --- SPBC12C2.09c // |||ADIPOR family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.50535434531175 2.01003718961214 -3.76152135043631 1.21390831882199 -1.70783913714642 Max fold change at or above threshold 1 3.76152135043631 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769561_at SPAC12G12.02.S1 --- 3.76118427577423 --- --- --- --- 2.14742541313171 5.25818395614624 5.6775951385498 2.0849711894989 0.49169921875 0.171387001872063 0.194580003619194 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12G12.02 /DEF=conserved protein (fungal and plant) --- --- --- --- --- --- SPAC12G12.02 // ||SPAC630.01c|conserved protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.83027733132769 2.44859911035417 -3.76118427577423 2.64390795779484 -1.02995447800304 Max fold change at or above threshold 2 3.76118427577423 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772563_at YNL047C.S1 Phosphoinositide PI4,5P(2) binding protein, forms a complex with Slm1p; acts downstream of Mss4p in a pathway regulating actin cytoskeleton organization in response to stress; phosphorylated by the Tor2p-containing complex TORC2 3.75849648972201 193.063835144043 676.745635986328 SLM2 30036 // actin cytoskeleton organization and biogenesis // inferred from genetic interaction /// 45011 // actin cable formation // inferred from genetic interaction 5886 // plasma membrane // inferred from direct assay 35091 // phosphoinositide binding // traceable author statement 685.23046875 182.315048217773 203.812622070313 668.260803222656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL047C /GEN=ALG11 /DB_XREF=GI:6324281 /SEG=NC_001146:-539909,541879 /DEF=Hypothetical ORF /NOTE=Ynl047cp --- --- --- --- --- --- S0004992 // SLM2 SGDID:S0004992, Chr XIV from 541880-539910, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019997 // cdna:Genscan chromosome:SGD1:XIV:539910:541880:-1 // ensembl // 11 // --- /// GENEFINDER00000020487 // cdna:GeneFinder chromosome:SGD1:XIV:539910:541880:-1 // ensembl // 11 // --- /// YNL047C // cdna:known chromosome:SGD1:XIV:539910:541880:-1 gene:YNL047C // ensembl // 11 // --- --- No cerevisiae_gene -1.52294589526323 -3.75849648972201 -1.41138471970913 -3.36206100382539 -1.02539377656973 Max fold change at or above threshold 4 3.75849648972201 Max fold change at or above threshold 0.895691665524484 -0.903792330401279 -0.826871761813549 0.834972426690344 434.904735565186 279.477573388196 0.64261791269069 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773494_at YOR376W-A.S1 Identified by fungal homology and RT-PCR 3.75841461376583 69.6875953674316 31.7851963043213 --- --- --- --- 27.0945472717285 72.3999710083008 66.9752197265625 36.4758453369141 0.018554700538516 0.000244141003349796 0.000244141003349796 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR376W-A /GEN=GDH1 /DB_XREF=GI:33438888 /SEG=NC_001147:+1045192,1045347 /DEF=Identified by fungal homology and RT-PCR /NOTE=Yor376w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028586 // YOR376W-A SGDID:S0028586, Chr XV from 1045192-1045347, Uncharacterized ORF // sgd // 11 // --- /// YOR376W-A // cdna:known chromosome:SGD1:XV:1045192:1045347:1 gene:YOR376W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.50102475504645 2.67212329780633 3.75841461376583 2.47190768883771 1.34624302709698 Max fold change at or above threshold 4 3.75841461376583 Max fold change at or above threshold -1.05895233279447 0.97034262795744 0.727360231338169 -0.638750526501136 50.7363958358765 22.3256966645131 0.440033161534235 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1770016_at YNL163C.S1 Cytoplasmic GTPase involved in biogenesis of the 60S ribosome; has similarity to translation elongation factor 2 (Eft1p and Eft2p) 3.75706692782368 209.046432495117 689.191528320313 RIA1 30489 // processing of 27S pre-rRNA // inferred from mutant phenotype /// 42273 // ribosomal large subunit biogenesis // inferred from mutant phenotype /// 42273 // ribosomal large subunit biogenesis // inferred from physical interaction /// 42273 // ribosomal large subunit biogenesis // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay 3924 // GTPase activity // inferred from direct assay 639.115173339844 170.110137939453 247.982727050781 739.267883300781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL163C /GEN=RIA1 /DB_XREF=GI:6324166 /SEG=NC_001146:-326741,330073 /DEF=RIbosome Assembly; Elongation Factor Like /NOTE=Ria1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11779510]; go_function: translation elongation factor activity [goid GO:0003746] [evidence ISS] [pmid 8686380]; go_process: ribosome biogenesis [goid GO:0007046] [evidence IGI,IPI,ISS] [pmid 11713675] --- --- --- --- scop // a.2.7.Phenylalanyl-tRNA synthetase (PheRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Phenylalanyl-tRNA synthetase (PheRS) // 0.509999990463257 --- S0005107 // RIA1 SGDID:S0005107, Chr XIV from 330073-326741, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019909 // cdna:Genscan chromosome:SGD1:XIV:326741:330073:-1 // ensembl // 11 // --- /// GENEFINDER00000020478 // cdna:GeneFinder chromosome:SGD1:XIV:326741:329866:-1 // ensembl // 11 // --- /// YNL163C // cdna:known chromosome:SGD1:XIV:326741:330073:-1 gene:YNL163C // ensembl // 11 // --- --- No cerevisiae_gene -1.09371506174201 -3.75706692782368 1.01539575502974 -2.57725681518523 1.1567052608649 Max fold change at or above threshold 4 3.75706692782368 Max fold change at or above threshold 0.673724657342473 -0.989362649253708 -0.713227203560107 1.02886519547134 449.118980407715 282.008667578792 0.627915273860796 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776685_at YPR018W.S1 Largest subunit (p90) of the Chromatin Assembly Complex (CAF-I) with Cac2p and Msi1p that assembles newly synthesized histones onto recently replicated DNA; involved in the maintenance of transcriptionally silent chromatin 3.75657760820386 73.2373161315918 278.484481811523 RLF2 6334 // nucleosome assembly // inferred from mutant phenotype 775 // chromosome, pericentric region // inferred from direct assay /// 5634 // nucleus // inferred from direct assay /// 5678 // chromatin assembly complex // inferred from direct assay 30528 // transcription regulator activity // inferred from mutant phenotype 267.380584716797 71.176643371582 75.2979888916016 289.58837890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR018W /GEN=RLF2 /DB_XREF=GI:6325275 /SEG=NC_001148:+594471,596291 /DEF=Chromatin Assembly Complex, subunit 1: largest (p90) subunit of three-subunit protein complex (yeast CAF-I) involved in DNA-replication-linked nucleosome assembly. Homol. to p150 subunit human Chromatin Assembly Factor-I (CAF-I) /NOTE=Rlf2p; go_component: chromatin assembly complex [goid GO:0005678] [evidence IDA] [pmid 9030687]; go_component: chromosome, pericentric region [goid GO:0000775] [evidence IDA] [pmid 11782447]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9030688]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: nucleosome assembly [goid GO:0006334] [evidence IMP] [pmid 9030688] --- --- --- --- --- --- S0006222 // RLF2 SGDID:S0006222, Chr XVI from 594473-596293, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020845 // cdna:GeneFinder chromosome:SGD1:XVI:594473:596293:1 // ensembl // 11 // --- /// GENSCAN00000017199 // cdna:Genscan chromosome:SGD1:XVI:595445:596293:1 // ensembl // 11 // --- /// YPR018W // cdna:known chromosome:SGD1:XVI:594473:596293:1 gene:YPR018W // ensembl // 11 // --- --- No cerevisiae_gene -1.33586213500041 -3.75657760820386 -1.01642139333351 -3.55096581798109 1.08305686896816 Max fold change at or above threshold 4 3.75657760820386 Max fold change at or above threshold 0.769993507976033 -0.88075255659931 -0.846077947866771 0.956836996490047 175.860898971558 118.857736847423 0.675862215776833 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772831_at YFR022W.S1 Protein that binds to Rsp5p, which is a hect-type ubiquitin ligase, via its 2 PY motifs; has similarity to Rod1p; mutation suppresses the temperature sensitivity of an mck1 rim11 double mutant 3.75501103524101 184.742881774902 67.4476585388184 ROG3 --- --- --- 61.1340713500977 139.926651000977 229.559112548828 73.7612457275391 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR022W /GEN=ATG18 /DB_XREF=GI:14318544 /SEG=NC_001138:+196821,199022 /DEF=Hypothetical ORF /NOTE=Yfr022wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001918 // YFR022W SGDID:S0001918, Chr VI from 196821-199022, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000023263 // cdna:Genscan chromosome:SGD1:VI:196821:199022:1 // ensembl // 11 // --- /// GENEFINDER00000018528 // cdna:GeneFinder chromosome:SGD1:VI:197388:199022:1 // ensembl // 11 // --- /// YFR022W // cdna:known chromosome:SGD1:VI:196821:199022:1 gene:YFR022W // ensembl // 11 // --- --- No cerevisiae_gene 1.52897185997942 2.28884888427692 1.39335314705605 3.75501103524101 1.20654888671047 Max fold change at or above threshold 4 3.75501103524101 Max fold change at or above threshold -0.842046694333971 0.179286539223316 1.34112959843004 -0.678369443319381 126.09527015686 77.1467891791259 0.611813504845635 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777968_at YLR072W.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 3.7543786076569 355.528915405273 1015.6858215332 --- --- 5737 // cytoplasm // inferred from direct assay --- 1021.26098632813 272.018646240234 439.039184570313 1010.11065673828 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR072W /GEN=RGR1 /DB_XREF=GI:6323101 /SEG=NC_001144:+278863,280944 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ylr072wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004062 // span:631-649 // numtm:1 S0004062 // YLR072W SGDID:S0004062, Chr XII from 278863-280944, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017873 // cdna:Genscan chromosome:SGD1:XII:278863:280944:1 // ensembl // 11 // --- /// GENEFINDER00000024582 // cdna:GeneFinder chromosome:SGD1:XII:278863:280944:1 // ensembl // 11 // --- /// YLR072W // cdna:known chromosome:SGD1:XII:278863:280944:1 gene:YLR072W // ensembl // 11 // --- --- No cerevisiae_gene -2.23014236328044 -3.7543786076569 -1.12415393716301 -2.32612719369829 -1.01103872087227 Max fold change at or above threshold 4 3.7543786076569 Max fold change at or above threshold 0.866829960953135 -1.06809841117562 -0.636765635314103 0.838034085536584 685.607368469238 387.219677420718 0.564783424491582 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778665_at YJL029C.S1 Component of the GARP (Golgi-associated retrograde protein) complex, Vps51p-Vps52p-Vps53p-Vps54p, which is required for the recycling of proteins from endosomes to the late Golgi; required for vacuolar protein sorting 3.75352935246833 360.822128295898 1248.73559570313 VPS53 6896 // Golgi to vacuole transport // inferred from mutant phenotype /// 42147 // retrograde transport, endosome to Golgi // inferred from direct assay 938 // GARP complex // inferred from physical interaction /// 5737 // cytoplasm // inferred from direct assay /// 5794 // Golgi apparatus // traceable author statement /// 5794 // Golgi apparatus // inferred from direct assay 5515 // protein binding // inferred from physical interaction 1222.71447753906 325.750610351563 395.893646240234 1274.75671386719 0.00195312988944352 0.00292969006113708 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL029C /GEN=VPS53 /DB_XREF=GI:6322431 /SEG=NC_001142:-388301,390769 /DEF=Required for Vacuolar Protein Sorting /NOTE=Vps53p; go_component: GARP complex [goid GO:0000938] [evidence IPI] [pmid 10637310]; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 10637310]; go_component: Golgi apparatus [goid GO:0005794] [evidence TAS] [pmid 11689439]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi to vacuole transport [goid GO:0006896] [evidence IMP] [pmid 10637310]; go_process: retrograde transport, endosome to Golgi [goid GO:0042147] [evidence IDA] [pmid 12686613] --- --- --- --- --- --- S0003566 // VPS53 SGDID:S0003566, Chr X from 390769-388301, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024116 // cdna:Genscan chromosome:SGD1:X:388301:390769:-1 // ensembl // 11 // --- /// GENEFINDER00000024379 // cdna:GeneFinder chromosome:SGD1:X:388301:390769:-1 // ensembl // 11 // --- /// YJL029C // cdna:known chromosome:SGD1:X:388301:390769:-1 gene:YJL029C // ensembl // 11 // --- --- No cerevisiae_gene -1.78926096198386 -3.75352935246833 -1.25363183602636 -3.08849229875516 1.04256286916048 Max fold change at or above threshold 4 3.75352935246833 Max fold change at or above threshold 0.813301071923773 -0.932187102657154 -0.795689029377142 0.914575060110522 804.778861999512 513.875648228239 0.638530250349134 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Sp-18SrRNA-3_at AFFX-r2-Sp-18SrRNA-3 --- 3.75325697224961 --- --- --- --- 44.4157409667969 22.5609359741211 11.8339195251465 23.2706737518311 0.014160200022161 0.00805663969367743 0.0461426004767418 0.00805663969367743 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=Z19578 gi|288694:1471-3312 S.pombe gene encoding 18S, 5.8S, and 28S ribosomal RNA (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPRRNA.22 // |||18S, 5.8S, and 28S rRNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPRRNA.23 // |||18S, 5.8S, and 28S rRNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPRRNA.08 // |||18S, 5.8S, and 28S ribosomal RNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- L20414 // gb // 2 // Cross Hyb Matching Probes /// L22642 // gb // 2 // Cross Hyb Matching Probes /// SPRRNA.21 // sanger // 3 // Cross Hyb Matching Probes AFFX_control No -1.85120065975532 -1.96870116637646 -1.47307738194418 -3.75325697224961 -1.90865728429122 Max fold change at or above threshold 4 3.75325697224961 Max fold change at or above threshold PPPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1779813_at YNL248C.S1 RNA polymerase I subunit A49 3.75067051792958 78.5269317626953 313.456741333008 RPA49 6360 // transcription from RNA polymerase I promoter // traceable author statement 5736 // DNA-directed RNA polymerase I complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 282.859710693359 75.415771484375 81.6380920410156 344.053771972656 0.000244141003349796 0.000732421991415322 0.00292969006113708 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL248C /GEN=RPA49 /DB_XREF=GI:6324081 /SEG=NC_001146:-181360,182607 /DEF=RNA polymerase I subunit A49 /NOTE=Rpa49p; go_component: DNA-directed RNA polymerase I complex [goid GO:0005736] [evidence TAS] [pmid 8246845]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 8246845]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS] --- --- --- --- --- --- S0005192 // RPA49 SGDID:S0005192, Chr XIV from 182607-181360, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019842 // cdna:Genscan chromosome:SGD1:XIV:181360:182607:-1 // ensembl // 11 // --- /// GENEFINDER00000020440 // cdna:GeneFinder chromosome:SGD1:XIV:181360:182607:-1 // ensembl // 11 // --- /// YNL248C // cdna:known chromosome:SGD1:XIV:181360:182607:-1 gene:YNL248C // ensembl // 11 // --- --- No cerevisiae_gene 1.68922466003226 -3.75067051792958 1.02998506702146 -3.46480060498289 1.21634067690056 Max fold change at or above threshold 4 3.75067051792958 Max fold change at or above threshold 0.629743432182448 -0.874108936117605 -0.829000597252139 1.0733661011873 195.991836547852 137.941691340007 0.703813453507429 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780106_at YAL018C.S1 Hypothetical protein 3.749687624519 27.1913919448853 8.88907146453857 --- --- --- --- 7.82400989532471 25.0451908111572 29.3375930786133 9.95413303375244 0.303710997104645 0.00537109375 0.018554700538516 0.00195312988944352 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL018C /GEN=FUN30 /DB_XREF=GI:6319301 /SEG=NC_001133:-118567,119544 /DEF=Hypothetical ORF /NOTE=Yal018cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000016 // span:56-75,90-112,117-139,207-229,263-285 // numtm:5 S0000016 // YAL018C SGDID:S0000016, Chr I from 119542-118565, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018246 // cdna:GeneFinder chromosome:SGD1:I:118565:119194:-1 // ensembl // 11 // --- /// GENSCAN00000020364 // cdna:Genscan chromosome:SGD1:I:118565:119542:-1 // ensembl // 11 // --- /// YAL018C // cdna:known chromosome:SGD1:I:118565:119542:-1 gene:YAL018C // ensembl // 11 // --- --- No cerevisiae_gene -1.30239938557238 3.20106839666999 1.83853475635078 3.749687624519 1.27225465802396 Max fold change at or above threshold 4 3.749687624519 Max fold change at or above threshold -0.950663661816377 0.651841766873963 1.05126837816966 -0.752446483227244 18.0402317047119 10.7464103443984 0.595691370282766 AAPAPP No 3 0 APPP 1 3 0 No No 2 < x = 3
1780141_at SPCC594.03.S1 --- 3.7495479091958 --- --- --- --- 1.48658668994904 5.57402801513672 3.34696936607361 2.26954627037048 0.725830018520355 0.366210997104645 0.24609400331974 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC594.03 /DEF=dubious --- --- --- --- --- --- SPCC594.03 // |||dubious|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.34760485105167 3.7495479091958 -2.08385506050008 2.25144580447465 1.52668275971736 Max fold change at or above threshold 2 3.7495479091958 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779811_at SPAPB1E7.05.S1 --- 3.74754503589583 --- --- --- --- 1.47420251369476 1.34294366836548 1.53618717193604 0.39337819814682 0.633789002895355 0.919434010982513 0.828612983226776 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1E7.05 /DEF=glycerophosphoryl diester phosphodiesterase domain --- --- --- --- --- --- D89133 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0528. // gb // 11 // --- /// SPAPB1E7.05 // |||glycerophosphoryl diester phosphodiesterase domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.13363023957843 -1.09773965090363 2.15772651080859 1.04204623019257 -3.74754503589583 Max fold change at or above threshold 0 3.74754503589583 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770842_at SPAC1F5.06.S1 --- 3.74724622286682 --- --- --- --- 8.74725151062012 6.92673873901367 9.90037822723389 2.33431458473206 0.0805663987994194 0.366210997104645 0.389892578125 0.357666015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F5.06 /DEF=heat shock protein 70 family --- --- --- --- --- --- SPAC1F5.06 // |||heat shock protein 70 family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.57273066419919 -1.26282394070282 -1.26178733526854 1.13182731915434 -3.74724622286682 Max fold change at or above threshold 3 3.74724622286682 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775500_at YER083C.S1 Protein required for meiotic nuclear division; appears to function in DNA replication and damage response; may be involved in cell wall function 3.74623161467197 398.469909667969 1198.65649414063 RMD7 7047 // cell wall organization and biogenesis // inferred from expression pattern /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay --- 1165.54699707031 311.125183105469 485.814636230469 1231.76599121094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER083C /GEN=RMD7 /DB_XREF=GI:37362643 /SEG=NC_001137:-326170,327027 /DEF=Required for Meiotic nuclear Division; functions in DNA replication and damage response /NOTE=Rmd7p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IEP,IMP] [pmid 10929718] --- --- --- --- --- S0000885 // span:151-170,197-216,262-284 // numtm:3 S0000885 // RMD7 SGDID:S0000885, Chr V from 327027-326170, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016872 // cdna:Genscan chromosome:SGD1:V:326170:327027:-1 // ensembl // 11 // --- /// GENEFINDER00000019688 // cdna:GeneFinder chromosome:SGD1:V:326170:327027:-1 // ensembl // 11 // --- /// YER083C // cdna:known chromosome:SGD1:V:326170:327027:-1 gene:YER083C // ensembl // 11 // --- --- No cerevisiae_gene -1.60858868770825 -3.74623161467197 1.12050812716711 -2.39915990616096 1.05681366286136 Max fold change at or above threshold 4 3.74623161467197 Max fold change at or above threshold 0.783749603581044 -1.04099788338362 -0.667922037964967 0.925170317767545 798.563201904297 468.241123809471 0.586354496040987 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771367_at YHR062C.S1 Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends 3.74441741783815 119.75915145874 318.889694213867 RPP1 6364 // rRNA processing // traceable author statement /// 8033 // tRNA processing // traceable author statement 172 // ribonuclease MRP complex // traceable author statement /// 5655 // nucleolar ribonuclease P complex // traceable author statement 171 // ribonuclease MRP activity // traceable author statement /// 4526 // ribonuclease P activity // traceable author statement 304.832550048828 81.4098739624023 158.108428955078 332.946838378906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR062C /GEN=RPP1 /DB_XREF=GI:6321853 /SEG=NC_001140:-222878,223759 /DEF=Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends /NOTE=Rpp1p; go_component: nucleolar ribonuclease P complex [goid GO:0005655] [evidence TAS] [pmid 11241345]; go_component: ribonuclease MRP complex [goid GO:0000172] [evidence TAS] [pmid 11241345]; go_function: ribonuclease MRP activity [goid GO:0000171] [evidence TAS] [pmid 11241345]; go_function: ribonuclease P activity [goid GO:0004526] [evidence TAS] [pmid 11241345]; go_process: rRNA processing [goid GO:0006364] [evidence TAS] [pmid 11241345]; go_process: tRNA processing [goid GO:0008033] [evidence TAS] [pmid 11241345] --- --- --- --- --- --- S0001104 // RPP1 SGDID:S0001104, Chr VIII from 223759-222878, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016607 // cdna:Genscan chromosome:SGD1:VIII:222878:223759:-1 // ensembl // 11 // --- /// GENEFINDER00000020253 // cdna:GeneFinder chromosome:SGD1:VIII:222878:223759:-1 // ensembl // 11 // --- /// YHR062C // cdna:known chromosome:SGD1:VIII:222878:223759:-1 gene:YHR062C // ensembl // 11 // --- --- No cerevisiae_gene 1.46291644212246 -3.74441741783815 -1.62273282503018 -1.92799683143672 1.09222862953964 Max fold change at or above threshold 4 3.74441741783815 Max fold change at or above threshold 0.7143100412903 -1.1520980556129 -0.51138062009292 0.949168634415516 219.324422836304 119.707301129445 0.545800142006031 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779050_at YPL255W.S1 Protein required for the spindle pole body (SPB) duplication, localized at the central plaque periphery; forms a complex with a nuclear envelope protein Mps2p and SPB components Spc29p and Kar1p; required for mitotic functions of Cdc5p 3.74261285764434 38.6841917037964 108.547744750977 BBP1 7020 // microtubule nucleation // inferred from physical interaction /// 7103 // spindle pole body duplication in nuclear envelope // inferred from mutant phenotype 5816 // spindle pole body // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from physical interaction 103.851974487305 27.7485218048096 49.6198616027832 113.243515014648 0.000244141003349796 0.018554700538516 0.00585938012227416 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL255W /GEN=BBP1 /DB_XREF=GI:6325000 /SEG=NC_001148:+67725,68882 /DEF=Involved in mitotic cell cycle and meiosis /NOTE=Bbp1p; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 9585415]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9585415]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752]; go_process: spindle pole body duplication (sensu Saccharomyces) [goid GO:0007103] [evidence IMP] [pmid 10654940] --- --- --- --- --- --- S0006176 // BBP1 SGDID:S0006176, Chr XVI from 67725-68882, Verified ORF // sgd // 11 // --- /// GENSCAN00000016990 // cdna:Genscan chromosome:SGD1:XVI:67725:68882:1 // ensembl // 11 // --- /// GENEFINDER00000021047 // cdna:GeneFinder chromosome:SGD1:XVI:67725:68882:1 // ensembl // 11 // --- /// YPL255W // cdna:known chromosome:SGD1:XVI:67725:68882:1 gene:YPL255W // ensembl // 11 // --- --- No cerevisiae_gene 1.6196180365008 -3.74261285764434 -1.55064288846993 -2.09295171596125 1.09043198816111 Max fold change at or above threshold 4 3.74261285764434 Max fold change at or above threshold 0.728758723375407 -1.105513122734 -0.578362495344097 0.955116894702692 73.6159682273865 41.4897349288301 0.563596946802027 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1775986_at YPL268W.S1 Phosphoinositide-specific phospholipase C, hydrolyzes phosphatidylinositol 4,5-biphosphate (PIP2) to generate inositol 1,4,5-triphosphate (IP3) and 1,2-diacylglycerol (DAG); involved in kinetochore function and pseudohyphal differentiation 3.7424883136323 114.479782104492 347.249435424805 PLC1 7124 // pseudohyphal growth // inferred from mutant phenotype /// 7165 // signal transduction // inferred from mutant phenotype /// 42144 // vacuole fusion, non-autophagic // inferred from mutant phenotype 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 5634 // nucleus // inferred from direct assay 4435 // phosphoinositide phospholipase C activity // inferred from sequence similarity 337.628997802734 118.761131286621 110.198432922363 356.869873046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL268W /GEN=PLC1 /DB_XREF=GI:6324987 /SEG=NC_001148:+35236,37845 /DEF=Affects kinetochore function possibly by modulating the structure of centromeric chromatin, hydrolyzes phosphatidylinositol 4,5-biphosphate (PIP2) to generate inositol 1,4,5-triphosphate (IP3) and 1,2-diacylglycerol (DAG). /NOTE=Plc1p; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IDA] [pmid 10779349]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10779349]; go_function: phosphoinositide phospholipase C activity [goid GO:0004435] [evidence ISS] [pmid 8395015]; go_process: cell growth and/or maintenance [goid GO:0008151] [evidence IMP] [pmid 7753023]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 10514491]; go_process: signal transduction [goid GO:0007165] [evidence IMP] [pmid 7753023] --- --- --- --- --- --- S0006189 // PLC1 SGDID:S0006189, Chr XVI from 35236-37845, Verified ORF // sgd // 11 // --- /// GENSCAN00000016978 // cdna:Genscan chromosome:SGD1:XVI:35236:37845:1 // ensembl // 11 // --- /// GENEFINDER00000020972 // cdna:GeneFinder chromosome:SGD1:XVI:36892:37845:1 // ensembl // 11 // --- /// YPL268W // cdna:known chromosome:SGD1:XVI:35236:37845:1 gene:YPL268W // ensembl // 11 // --- --- No cerevisiae_gene -3.7424883136323 -2.84292507274869 1.11701591197736 -3.06382757766256 1.05698821893072 Max fold change at or above threshold 4 3.7424883136323 Max fold change at or above threshold 0.79281839450814 -0.832465767225098 -0.896051245781872 0.935698618498831 230.864608764648 134.664369264946 0.583304517680438 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-Scv2-r2-Bs-phe-3_at AFFX-Scv2-r2-Bs-phe-3 --- 3.74244755961128 --- --- --- --- 1.34896945953369 1.63101398944855 1.67558526992798 0.857541501522064 0.888427972793579 0.870360970497131 0.962401986122131 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=pheB /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2897-3200 of gb:M24537.1, not 100% identical /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. --- --- --- --- --- --- AFFX-Scv2-r2-Bs-phe-3 // --- // affx // --- // --- --- AFFX_control No -1.87490406753645 1.20908147914064 -3.74244755961128 1.24212246473481 -1.57306609317378 Max fold change at or above threshold 0 3.74244755961128 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772474_at SPBC26H8.08c.S1 --- 3.74233228306523 --- --- --- --- 1.74689722061157 6.5374698638916 1.52820718288422 5.20774602890015 0.466064006090164 0.303710997104645 0.5 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC26H8.08c /DEF=GTPase activity (predicted) --- --- --- --- --- --- SPBC26H8.08c // |||GTPase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.19806588976563 3.74233228306523 2.39887659618142 -1.1431023490641 2.981140485802 Max fold change at or above threshold 2 3.74233228306523 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775570_at YGL226W.S1 Hypothetical protein 3.74182490527828 63.3569622039795 157.492431640625 --- --- 5739 // mitochondrion // inferred from direct assay --- 209.482543945313 55.984058380127 70.729866027832 105.502319335938 0.00415039015933871 0.000732421991415322 0.000244141003349796 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL226W /GEN=OST5 /DB_XREF=GI:6321212 /SEG=NC_001139:+73338,73709 /DEF=Hypothetical ORF /NOTE=Ygl226wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003195 // span:87-109 // numtm:1 S0003195 // YGL226W SGDID:S0003195, Chr VII from 73339-73710, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000019180 // cdna:Genscan chromosome:SGD1:VII:73339:73710:1 // ensembl // 10 // --- /// YGL226W // cdna:known chromosome:SGD1:VII:73339:73710:1 gene:YGL226W // ensembl // 10 // --- --- No cerevisiae_gene -2.63228496207545 -3.74182490527828 -1.30931959223029 -2.96172685896056 -1.98557287900263 Max fold change at or above threshold 4 3.74182490527828 Max fold change at or above threshold 1.43096239366993 -0.786434480280339 -0.573420601599382 -0.0711073117902057 110.424696922302 69.2246333385191 0.626894483461679 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773252_at SPAC959.06c.S1 --- 3.74168493928254 --- --- --- --- 3.41472315788269 1.23376309871674 1.86305141448975 4.29049158096313 0.334473013877869 0.943848013877869 0.533936023712158 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC959.06c /DEF=hypothetical protein --- --- --- --- --- --- SPAC959.06c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.28791612926105 -2.76773001351266 -3.74168493928254 -1.83286576598205 1.25646835265658 Max fold change at or above threshold 2 3.74168493928254 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771275_at SPBC17D11.03c.S1 --- 3.73725539113807 --- --- --- --- 1.7241644859314 0.942499756813049 1.11390554904938 0.461345106363297 0.533936023712158 0.633789002895355 0.753906011581421 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17D11.03c /DEF=hypothetical protein --- --- --- --- --- --- SPBC17D11.03c // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.14352466608449 -1.82935271173061 2.552691978478 -1.54785519059746 -3.73725539113807 Max fold change at or above threshold 0 3.73725539113807 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771372_at YOL142W.S1 Protein involved in rRNA processing; component of the exosome 3->5 exonuclease complex 3.73643768100935 323.046607971191 988.933746337891 RRP40 6365 // 35S primary transcript processing // traceable author statement /// 6402 // mRNA catabolism // inferred from physical interaction /// 42255 // ribosome assembly // traceable author statement 176 // nuclear exosome (RNase complex) // inferred from direct assay /// 177 // cytoplasmic exosome (RNase complex) // inferred from direct assay 175 // 3'-5'-exoribonuclease activity // traceable author statement 901.873352050781 241.372512817383 404.720703125 1075.994140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL142W /GEN=RRP40 /DB_XREF=GI:6324430 /SEG=NC_001147:+55556,56278 /DEF=Ribosomal RNA Processing /NOTE=Rrp40p; go_component: cytoplasmic exosome (RNase complex) [goid GO:0000177] [evidence IDA] [pmid 10465791]; go_component: nuclear exosome (RNase complex) [goid GO:0000176] [evidence IDA] [pmid 10465791]; go_function: 3'-5'-exoribonuclease activity [goid GO:0000175] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: mRNA catabolism [goid GO:0006402] [evidence IPI] [pmid 10465791]; go_process: ribosome assembly [goid GO:0042255] [evidence TAS] [pmid 15116429] --- --- --- --- --- --- S0005502 // RRP40 SGDID:S0005502, Chr XV from 55556-56278, Verified ORF // sgd // 11 // --- /// GENSCAN00000017356 // cdna:Genscan chromosome:SGD1:XV:55556:56278:1 // ensembl // 11 // --- /// GENEFINDER00000022926 // cdna:GeneFinder chromosome:SGD1:XV:55556:56278:1 // ensembl // 11 // --- /// YOL142W // cdna:known chromosome:SGD1:XV:55556:56278:1 gene:YOL142W // ensembl // 11 // --- --- No cerevisiae_gene 1.18821263222109 -3.73643768100935 1.15727023009086 -2.2283845256422 1.19306567621527 Max fold change at or above threshold 4 3.73643768100935 Max fold change at or above threshold 0.619957160142771 -1.04539560234637 -0.633537897075136 1.05897633927874 655.990177154541 396.613170561036 0.604602301030493 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771269_at YLR103C.S1 DNA replication initiation factor; recruited to MCM pre-RC complexes at replication origins; promotes release of MCM from Mcm10p, recruits elongation machinery; mutants in human homolog may cause velocardiofacial and DiGeorge syndromes 3.73638301763766 48.9182224273682 135.044471740723 CDC45 6267 // pre-replicative complex formation and maintenance // inferred from physical interaction /// 6270 // DNA replication initiation // traceable author statement /// 6271 // DNA strand elongation // traceable author statement 5656 // pre-replicative complex // inferred from direct assay /// 5657 // replication fork // inferred from direct assay 3677 // DNA binding // traceable author statement 132.948638916016 62.2542686462402 35.5821762084961 137.14030456543 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR103C /GEN=CDC45 /DB_XREF=GI:6323132 /SEG=NC_001144:-343990,345942 /DEF=DNA replication initiation factor; recruited to MCM pre-RC complexes at origins of replication; promotes disengagement of MCM from its anchor, Mcm10p, and recruits elongation machinery /NOTE=Cdc45p; go_component: pre-replicative complex [goid GO:0005656] [evidence IDA] [pmid 9335335]; go_component: replication fork [goid GO:0005657] [evidence IDA] [pmid 9335335]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 9442876]; go_process: DNA replication initiation [goid GO:0006270] [evidence TAS] [pmid 9914182]; go_process: DNA strand elongation [goid GO:0006271] [evidence TAS] [pmid 12730134]; go_process: pre-replicative complex formation and maintenance [goid GO:0006267] [evidence IPI] [pmid 9335335] --- --- --- --- --- --- S0004093 // CDC45 SGDID:S0004093, Chr XII from 345942-343990, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017900 // cdna:Genscan chromosome:SGD1:XII:343990:345942:-1 // ensembl // 11 // --- /// GENEFINDER00000024879 // cdna:GeneFinder chromosome:SGD1:XII:343990:345942:-1 // ensembl // 11 // --- /// YLR103C // cdna:known chromosome:SGD1:XII:343990:345942:-1 gene:YLR103C // ensembl // 11 // --- --- No cerevisiae_gene 1.27861984762402 -2.13557466511246 -1.44603417055971 -3.73638301763766 1.03152845853549 Max fold change at or above threshold 4 3.73638301763766 Max fold change at or above threshold 0.804352173245074 -0.583661723204646 -1.10734182403452 0.886651373994092 91.9813470840454 50.9320334980783 0.553721326254774 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779249_at YAL059W.S1 Protein of unknown function, localized in the nucleoplasm and the nucleolus, genetically interacts with MTR2 in 60S ribosomal protein subunit export 3.73603189199594 122.253242492676 462.267364501953 ECM1 55 // ribosomal large subunit-nucleus export // inferred from genetic interaction /// 55 // ribosomal large subunit-nucleus export // traceable author statement /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5654 // nucleoplasm // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 453.262969970703 121.32202911377 123.184455871582 471.271759033203 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL059W /GEN=ECM1 /DB_XREF=GI:6319259 /SEG=NC_001133:+36510,37148 /DEF=Protein of unknown function, localized in the nucleoplasm and the nucleolus, genetically interacts with MTR2 in 60S ribosomal protein subunit export /NOTE=Ecm1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11583615]; go_component: nucleoplasm [goid GO:0005654] [evidence IDA] [pmid 11583615]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584]; go_process: ribosomal large subunit-nucleus export [goid GO:0000055] [evidence IGI] [pmid 11583615]; go_process: ribosomal large subunit-nucleus export [goid GO:0000055] [evidence TAS] [pmid 12486219] --- --- --- --- --- --- S0000055 // ECM1 SGDID:S0000055, Chr I from 36510-37148, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018174 // cdna:GeneFinder chromosome:SGD1:I:36582:37148:1 // ensembl // 11 // --- /// GENSCAN00000020327 // cdna:Genscan chromosome:SGD1:I:36582:37148:1 // ensembl // 11 // --- /// YAL059W // cdna:known chromosome:SGD1:I:36510:37148:1 gene:YAL059W // ensembl // 11 // --- YAL059C-A // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene 1.0976257835286 -3.73603189199594 -1.23158091564315 -3.67954679641742 1.03973143683823 Max fold change at or above threshold 4 3.73603189199594 Max fold change at or above threshold 0.819575793194022 -0.870152494264852 -0.860671906640222 0.911248607711052 292.260303497314 196.44634188857 0.672162245566049 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779999_s_at YHL009W-B.S1 TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition 3.73572358444638 53.1906242370605 147.431831359863 --- 6319 // Ty element transposition // inferred from sequence similarity 943 // retrotransposon nucleocapsid // inferred from sequence similarity /// 5739 // mitochondrion // inferred from direct assay 3723 // RNA binding // inferred from sequence similarity /// 5515 // protein binding // inferred from sequence similarity /// 3887 // DNA-directed DNA polymerase activity // inferred from sequence similarity /// 3964 // RNA-directed DNA polymerase activity // inferred from sequence similarity /// 4540 // ribonuclease activity // inferred from sequence similarity /// 8233 // peptidase activity // inferred from sequence similarity 145.831878662109 67.3441314697266 39.0371170043945 149.031784057617 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL009W-B /GEN=YAP3 /DB_XREF=GI:7839180 /SEG=NC_001140:+85904,91313 /DEF=TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /NOTE=Yhl009w-bp; go_component: retrotransposon nucleocapsid [goid GO:0000943] [evidence ISS] [pmid 9582191]; go_function: DNA-directed DNA polymerase activity [goid GO:0003887] [evidence ISS] [pmid 9582191]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 9582191]; go_function: RNA-directed DNA polymerase activity [goid GO:0003964] [evidence ISS] [pmid 9582191]; go_function: peptidase activity [goid GO:0008233] [evidence ISS] [pmid 9582191]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 9582191]; go_function: ribonuclease activity [goid GO:0004540] [evidence ISS] [pmid 9582191]; go_process: Ty element transposition [goid GO:0006319] [evidence ISS] [pmid 9582191] --- --- --- --- --- --- S0007372 // YHL009W-B SGDID:S0007372, Chr VIII from 85904-86989,86991-91313, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0003649 // YJL113W SGDID:S0003649, Chr X from 197834-198919,198921-203246, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// GENSCAN00000016548 // cdna:Genscan chromosome:SGD1:VIII:87387:91313:1 // ensembl // 11 // --- /// GENEFINDER00000020252 // cdna:GeneFinder chromosome:SGD1:VIII:87594:91313:1 // ensembl // 11 // --- /// GENSCAN00000024049 // cdna:Genscan chromosome:SGD1:X:199320:203246:1 // ensembl // 11 // --- /// GENEFINDER00000024539 // cdna:GeneFinder chromosome:SGD1:X:199527:203246:1 // ensembl // 11 // --- /// GENEFINDER00000020736 // cdna:GeneFinder chromosome:SGD1:XVI:437330:439075:-1 // ensembl // 11 // --- /// YHL009W-B // cdna:known chromosome:SGD1:VIII:85904:91313:1 gene:YHL009W-B // ensembl // 11 // --- /// YJL113W // cdna:known chromosome:SGD1:X:197834:203246:1 gene:YJL113W // ensembl // 11 // --- --- No cerevisiae_gene -1.80489933833966 -2.16547270681879 1.00498365741232 -3.73572358444638 1.0219424272996 Max fold change at or above threshold 4 3.73572358444638 Max fold change at or above threshold 0.81813963242963 -0.592515431149144 -1.10127552070098 0.875651319420491 100.311227798462 55.6392198339845 0.554665923796395 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772292_at YFL054C.S1 Hypothetical protein 3.73530243595021 10.7860083580017 6.07894492149353 --- 6833 // water transport // inferred from sequence similarity 16021 // integral to membrane // inferred from sequence similarity 5215 // transporter activity // inferred from mutant phenotype /// 15168 // glycerol transporter activity // inferred from sequence similarity /// 15250 // water channel activity // inferred from sequence similarity 3.12414979934692 9.90237236022949 11.6696443557739 9.03374004364014 0.5 0.129638999700546 0.0952147990465164 0.0239257998764515 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL054C /GEN=AGP3 /DB_XREF=GI:14318465 /SEG=NC_001138:-20847,22787 /DEF=Hypothetical ORF /NOTE=Yfl054cp; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 12832087]; go_function: glycerol transporter activity [goid GO:0015168] [evidence ISS] [pmid 12450819]; go_function: transporter activity [goid GO:0005215] [evidence IMP] [pmid 12832087]; go_function: water channel activity [goid GO:0015250] [evidence ISS] [pmid 10400607]; go_process: water transport [goid GO:0006833] [evidence ISS] [pmid 10400607] --- --- --- --- --- S0001840 // span:351-373,383-405,426-448,483-502,515-537,563-585 // numtm:6 S0001840 // YFL054C SGDID:S0001840, Chr VI from 22787-20847, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018557 // cdna:GeneFinder chromosome:SGD1:VI:20847:22439:-1 // ensembl // 11 // --- /// GENSCAN00000023195 // cdna:Genscan chromosome:SGD1:VI:20847:22787:-1 // ensembl // 11 // --- /// YFL054C // cdna:known chromosome:SGD1:VI:20847:22787:-1 gene:YFL054C // ensembl // 11 // --- --- No cerevisiae_gene -1.34998491732966 3.16962149583848 3.22883743547782 3.73530243595021 2.8915835103453 Max fold change at or above threshold 4 3.73530243595021 Max fold change at or above threshold -1.43277070910612 0.396739612511857 0.873744067280594 0.162287029313668 8.43247663974762 3.70493813606259 0.43936536018361 AAAPAP No 4 0 AAAP 3 1 0 No No x = 1
1777981_at SPAC14C4.06c.S1 --- 3.73307613604107 --- --- --- --- 1.3535248041153 5.05281114578247 2.88094758987427 2.65447163581848 0.828612983226776 0.79931640625 0.870360970497131 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC14C4.06c /DEF=zinc finger protein (inferred) --- --- --- --- --- --- SPAC14C4.06c // |||zinc finger protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.0599156002342 3.73307613604107 -1.17525924831032 2.12847786838849 1.96115477732492 Max fold change at or above threshold 3 3.73307613604107 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771105_at SPCC1442.08c.S1 --- 3.73225449497454 --- --- --- --- 0.965043783187866 2.19848537445068 2.60403776168823 3.60178899765015 0.665526986122131 0.432372987270355 0.432372987270355 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1442.08c /GEN=cox12 /DEF=cytochrome c oxidase subunit VIb --- --- --- --- --- --- SPCC1442.08c // |cox12||cytochrome c oxidase subunit VIb|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.47566672027753 2.27811982497659 1.78602458638724 2.69836229925881 3.73225449497454 Max fold change at or above threshold 2 3.73225449497454 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776606_at SPAC227.08c.S1 --- 3.73223904695219 --- --- --- --- 1.39588701725006 1.00438475608826 1.16167676448822 1.41292142868042 0.533936023712158 0.985840022563934 0.870360970497131 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC227.08c /GEN=yth1 /DEF=zinc finger protein --- --- --- --- --- --- SPAC227.08c // |yth1||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.32175397918406 -1.38979311343451 3.73223904695219 -1.20161396002874 1.01220328810273 Max fold change at or above threshold 0 3.73223904695219 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770529_at YOL032W.S1 Hypothetical protein 3.73204263975895 5100.94946289063 1648.609375 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1710.56286621094 6383.8935546875 3818.00537109375 1586.65588378906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL032W /GEN=MSE1 /DB_XREF=GI:6324541 /SEG=NC_001147:+265429,266169 /DEF=Hypothetical ORF /NOTE=Yol032wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005392 // YOL032W SGDID:S0005392, Chr XV from 265429-266169, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017441 // cdna:Genscan chromosome:SGD1:XV:265429:266169:1 // ensembl // 11 // --- /// GENEFINDER00000022700 // cdna:GeneFinder chromosome:SGD1:XV:265429:266169:1 // ensembl // 11 // --- /// YOL032W // cdna:known chromosome:SGD1:XV:265429:266169:1 gene:YOL032W // ensembl // 11 // --- --- No cerevisiae_gene -1.39036497036939 3.73204263975895 1.2749207143031 2.23201698488346 -1.07809316669597 Max fold change at or above threshold 4 3.73204263975895 Max fold change at or above threshold -0.738904890134278 1.33603355057301 0.196790389411043 -0.793919049849777 3374.77941894531 2252.27437922619 0.667384175268578 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774039_at SPAC589.07c.S1 --- 3.73182452541901 --- --- --- --- 17.4276065826416 6.54504632949829 8.98843765258789 7.48910140991211 0.0805663987994194 0.398925989866257 0.0805663987994194 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC589.07c /DEF=WD repeat protein --- --- --- --- --- --- SPAC589.07c // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.24734479254434 -2.66271706956389 -3.73182452541901 -1.93889163570312 -2.32706243763444 Max fold change at or above threshold 4 3.73182452541901 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778273_at SPAC26A3.08.S1 --- 3.7307423170877 --- --- --- --- 8.55468368530273 4.91439819335938 2.29302453994751 9.64137172698975 0.303710997104645 0.533936023712158 0.601073980331421 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26A3.08 /GEN=smb1 /DEF=small nuclear ribonucleoprotein (snRNP) (subunit B) --- --- --- --- --- --- SPAC26A3.08 // |smb1|smb|small nuclear ribonucleoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.40361454459368 -1.74073881454342 1.37616490803586 -3.7307423170877 1.12702843046716 Max fold change at or above threshold 3 3.7307423170877 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-TrpnX-M_at AFFX-TrpnX-M --- 3.72955647864289 --- --- --- --- 1.03282809257507 2.35984086990356 0.813607096672058 0.276930540800095 0.686306953430176 0.824671745300293 0.910521924495697 0.963443458080292 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=trpD, trpC /DB_XREF=gb:K01391.1 /NOTE=SIF corresponding to nucleotides 2880-3359 of gb:K01391.1, not 100% identical /DEF=B.subtilis tryptophan (trp) operon, complete cds. --- --- --- --- --- --- AFFX-TrpnX-M // B. subtilis /GEN=trpD, trpC /DB_XREF=gb:K01391.1 /NOTE=SIF corresponding to nucleotides 2880-3359 of gb:K01391.1, not 100% identical /DEF=B.subtilis tryptophan (trp) operon, complete cds. // affx // --- // --- /// AFFX-TrpnX-M // --- // gb // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// K01391 // Bacillus subtilis /REF=K01391 /DEF=B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 /LEN=2609 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-TrpnX-M // --- // unknown // --- // --- /// AFFX-TrpnX-M // --- // unknown // --- // --- /// AFFX-TrpnX-M // --- // unknown // --- // --- /// AFFX-TrpnX-M // --- // unknown // --- // --- /// AFFX-TrpnX-M // B. subtilis /GEN=trpD, trpC /DB_XREF=gb:K01391.1 /NOTE=SIF corresponding to nucleotides 2880-3359 of gb:K01391.1, not 100% identical /DEF=B.subtilis tryptophan (trp) operon, complete cds. // affx // --- // --- /// K01391 // K01391 B subtilis TrpE protein, TrpD protein, TrpC protein corresponding to nucleotides 1883-4400 of K01391 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-TrpnX-M // --- // unknown // --- // --- /// AFFX-TrpnX-M // --- // affx // --- // --- /// AFFX-TrpnX-M // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-TrpnX-M // --- // affx // --- // --- /// AFFX-TrpnX-M // --- // affx // --- // --- /// AFFX-TrpnX-M // --- // affx // --- // --- /// AFFX-TrpnX-M // --- // affx // --- // --- /// AFFX-TrpnX-M // --- // affx // --- // --- /// AFFX-TrpnX-M // --- // affx // --- // --- /// AFFX-TrpnX-M // --- // affx // --- // --- /// AFFX-TrpnX-M // --- // affx // --- // --- /// AFFX-TrpnX-M // --- // affx // --- // --- /// AFFX-TrpnX-M // --- // affx // --- // --- /// AFFX-TrpnX-M // --- // affx // --- // --- 939004 // gb // 2 // Cross Hyb Matching Probes /// 50812173 // gb // 12 // Negative Strand Matching Probes AFFX_control No -2.34081924445271 2.28483412376976 -1.98678615985369 -1.26944331827943 -3.72955647864289 Max fold change at or above threshold 0 3.72955647864289 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778650_at SPBC776.16.S1 --- 3.7290989396179 --- --- --- --- 0.56808614730835 2.11844944953918 1.66945135593414 0.605852961540222 0.932372987270355 0.753906011581421 0.780517995357513 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC776.16 /DEF=sequence orphan --- --- --- --- --- --- SPBC776.16 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 3.16683433176958 3.7290989396179 1.1613132395416 2.93872921183552 1.06648078713205 Max fold change at or above threshold 0 3.7290989396179 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772393_at YLR154W-E.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching; encoded within the the 35S rRNA transcript on the opposite strand 3.72877767653384 2226.630859375 748.678466796875 --- --- --- --- 787.861206054688 2937.75927734375 1515.50244140625 709.495727539063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR154W-E /GEN=TAR1 /DB_XREF=GI:33438831 /SEG=NC_001144:+455434,455637 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ylr154w-ep; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028676 // YLR154W-E SGDID:S0028676, Chr XII from 455434-455637, Uncharacterized ORF // sgd // 11 // --- /// YLR154W-E // cdna:known chromosome:SGD1:XII:455434:455637:1 gene:YLR154W-E // ensembl // 11 // --- K01048 // gb // 11 // Negative Strand Matching Probes No cerevisiae_gene 1.17152986159777 3.72877767653384 1.12933396899581 1.9235652545901 -1.11045236140807 Max fold change at or above threshold 4 3.72877767653384 Max fold change at or above threshold -0.677696946344216 1.40431645807499 0.0269684635380975 -0.75358797526887 1487.65466308594 1032.60529770162 0.694116264563459 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771932_at SPAC57A7.10c.S1 --- 3.72636857895334 --- --- --- --- 4.04889154434204 5.29687118530273 5.05080795288086 3.2820098400116 0.59228515625 0.466064006090164 0.567627012729645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC57A7.10c /GEN=sec21 /DEF=adaptin --- --- --- --- --- --- SPAC57A7.10c // |sec21||coatomer gamma subunit |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.72636857895334 1.30822748085328 -2.47554066640676 1.24745449404267 -1.233662219711 Max fold change at or above threshold 4 3.72636857895334 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775427_at SPBC14F5.11c.S1 --- 3.72559138553825 --- --- --- --- 0.791319012641907 0.483366459608078 1.31429541110992 0.212400913238525 0.525634765625 0.805419981479645 0.567627012729645 0.7470703125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14F5.11c /DEF=PX domain --- --- --- --- --- --- SPBC14F5.11c // |||PX domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.30698358633126 -1.63709954820515 -2.56764665381438 1.66089199186811 -3.72559138553825 Max fold change at or above threshold 0 3.72559138553825 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776733_at SPAC17G8.07.S1 --- 3.72534611350804 --- --- --- --- 0.571500301361084 2.12903642654419 1.27236306667328 0.555702865123749 0.850341975688934 0.633789002895355 0.601073980331421 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G8.07 /DEF=involved in transcriptional regulation --- --- --- --- --- --- SPAC17G8.07 // |||chromatin remodeling complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.0440383705611 3.72534611350804 3.32041875708685 2.22635589805118 -1.02842784737814 Max fold change at or above threshold 0 3.72534611350804 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769766_at YBR296C.S1 Na+/Pi cotransporter, active in early growth phase; similar to phosphate transporters of Neurospora crassa; transcription regulated by inorganic phosphate concentrations and Pho4p 3.72346454087352 859.075286865234 466.620468139648 PHO89 6817 // phosphate transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from mutant phenotype /// 5886 // plasma membrane // inferred from sequence similarity 15319 // sodium:inorganic phosphate symporter activity // inferred from mutant phenotype /// 15319 // sodium:inorganic phosphate symporter activity // inferred from sequence similarity 428.658172607422 797.848022460938 920.302551269531 504.582763671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR296C /GEN=PHO89 /DB_XREF=GI:6319773 /SEG=NC_001134:-796754,798478 /DEF=Na+/Pi cotransporter, active in early growth phase; similar to phosphate transporters of Neurospora crassa; transcription regulated by inorganic phosphate concentrations and Pho4p /NOTE=Pho89p; go_component: plasma membrane [goid GO:0005886] [evidence IMP,ISS] [pmid 9671031]; go_function: sodium:inorganic phosphate symporter activity [goid GO:0015319] [evidence IMP,ISS] [pmid 9671031]; go_process: phosphate transport [goid GO:0006817] [evidence IMP] [pmid 9671031] --- --- --- --- --- S0000500 // span:4-26,47-69,84-106,118-140,150-172,185-207,222-244,401-420,450-472,540-562 // numtm:10 S0000500 // PHO89 SGDID:S0000500, Chr II from 798516-796792, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021375 // cdna:Genscan chromosome:SGD1:II:796792:798516:-1 // ensembl // 11 // --- /// GENEFINDER00000022203 // cdna:GeneFinder chromosome:SGD1:II:796792:798516:-1 // ensembl // 11 // --- /// YBR296C // cdna:known chromosome:SGD1:II:796792:798516:-1 gene:YBR296C // ensembl // 11 // --- --- No cerevisiae_gene 1.04586562511858 1.86126865984573 3.72346454087352 2.14693807345736 1.17712152926567 Max fold change at or above threshold 4 3.72346454087352 Max fold change at or above threshold -1.0004069756404 0.576690964231265 1.09978981212379 -0.676073800714659 662.847877502441 234.094434162763 0.353164643213179 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776821_at SPBC13A2.04c.S1 --- 3.72096469121575 --- --- --- --- 7.60862255096436 11.5895128250122 15.078221321106 3.38181948661804 0.274170011281967 0.466064006090164 0.274170011281967 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13A2.04c /GEN=ptr2 /DEF=PTR family peptide transporter --- --- --- --- --- --- SPBC13A2.04c // |||PTR family peptide transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.705751965714 1.52320774849625 -3.72096469121575 1.98172812754325 -2.24986063894655 Max fold change at or above threshold 4 3.72096469121575 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775099_at SPAC30D11.07.S1 --- 3.71983429659766 --- --- --- --- 9.19058227539063 2.47069668769836 4.27721738815308 4.51788330078125 0.24609400331974 0.665526986122131 0.567627012729645 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30D11.07 /GEN=nth1 /DEF=DNA endonuclease III --- --- --- --- --- --- AB191154 // Schizosaccharomyces pombe nth1 mRNA for DNA endonuclease III, complete cds. // gb // 11 // --- /// SPAC30D11.07 // |nth1||DNA endonuclease III|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.09524548739013 -3.71983429659766 -2.9598223619597 -2.14872928854317 -2.03426730252226 Max fold change at or above threshold 3 3.71983429659766 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772214_at YGL015C.S1 Hypothetical protein 3.71893438169554 32.4796409606934 10.494696855545 --- --- --- --- 13.2085561752319 49.121753692627 15.8375282287598 7.78083753585815 0.018554700538516 0.00415039015933871 0.00805663969367743 0.014160200022161 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL015C /GEN=KAP122 /DB_XREF=GI:6321423 /SEG=NC_001139:-465046,465438 /DEF=Hypothetical ORF /NOTE=Ygl015cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002983 // YGL015C SGDID:S0002983, Chr VII from 465440-465048, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YGL015C // cdna:known chromosome:SGD1:VII:465048:465440:-1 gene:YGL015C // ensembl // 11 // --- --- No cerevisiae_gene -1.61623663645918 3.71893438169554 -1.79223044919651 1.19903553565208 -1.69757511506442 Max fold change at or above threshold 4 3.71893438169554 Max fold change at or above threshold -0.442092218568891 1.47573455732266 -0.301700570209422 -0.73194176854435 21.4871689081192 18.7259860842749 0.87149620149349 PPPPPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1776724_at YLR238W.S1 Protein involved in G1 cell cycle arrest in response to pheromone, in a pathway different from the Far1p-dependent pathway; interacts with Far3p, Far7p, Far8p, Far9p, and Far11p; potential Cdc28p substrate 3.71737434603479 112.136241912842 345.254425048828 FAR10 751 // cell cycle arrest in response to pheromone // inferred from mutant phenotype /// 751 // cell cycle arrest in response to pheromone // inferred from physical interaction 5783 // endoplasmic reticulum // inferred from direct assay --- 341.790466308594 91.9440536499023 132.328430175781 348.718383789063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR238W /GEN=FAR10 /DB_XREF=GI:6323267 /SEG=NC_001144:+614757,616193 /DEF=Protein involved in G1 cell cycle arrest in response to pheromone, in a pathway different from the Far1p-dependent pathway; interacts with Far3p, Far7p, Far8p, Far9p, and Far11p; potential Cdc28p substrate /NOTE=Far10p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 12514182]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell cycle arrest in response to pheromone [goid GO:0000751] [evidence IMP,IPI] [pmid 12588993] --- --- --- --- scop // a.2.7.Seryl-tRNA synthetase (SerRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) // 0.529999971389771 S0004228 // span:454-476 // numtm:1 S0004228 // FAR10 SGDID:S0004228, Chr XII from 614757-616193, Verified ORF // sgd // 11 // --- /// YLR238W // cdna:known chromosome:SGD1:XII:614757:616193:1 gene:YLR238W // ensembl // 11 // --- --- No cerevisiae_gene -2.02313114498093 -3.71737434603479 1.26298689529 -2.58289519383378 1.02026948719574 Max fold change at or above threshold 4 3.71737434603479 Max fold change at or above threshold 0.833872758991939 -1.0082942046849 -0.71053221765854 0.884953663351504 228.695333480835 135.62636698251 0.593043875964682 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776303_at SPAC22H10.02.S1 --- 3.71631801646309 --- --- --- --- 9.7342700958252 16.8281116485596 10.9592399597168 9.07306861877441 0.194580003619194 0.0952147990465164 0.24609400331974 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22H10.02 /DEF=hypothetical protein --- --- --- --- --- --- SPAC22H10.02 // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.71631801646309 1.72874920080313 1.41849573268547 1.12584095693184 -1.07287517650672 Max fold change at or above threshold 4 3.71631801646309 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772608_at YPL192C.S1 Pheromone-regulated protein required for karyogamy; localizes to the inner membrane of the nuclear envelope 3.71590835752209 51.4810314178467 172.225189208984 PRM3 741 // karyogamy // inferred from direct assay /// 741 // karyogamy // inferred from mutant phenotype 5635 // nuclear membrane // inferred from direct assay /// 5635 // nuclear membrane // inferred from mutant phenotype --- 145.181289672852 63.8918609619141 39.0702018737793 199.269088745117 0.000244141003349796 0.00122069998178631 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL192C /GEN=PRM3 /DB_XREF=GI:6325064 /SEG=NC_001148:-182654,183055 /DEF=Pheromone-regulated protein required for karyogamy; localizes to the inner membrane of the nuclear envelope /NOTE=Prm3p; go_component: nuclear membrane [goid GO:0005635] [evidence IDA,IMP] [pmid 12514182]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: karyogamy [goid GO:0000741] [evidence IDA,IMP] [pmid 12514182] --- --- --- --- --- S0006113 // span:105-127 // numtm:1 S0006113 // PRM3 SGDID:S0006113, Chr XVI from 183055-182654, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017040 // cdna:Genscan chromosome:SGD1:XVI:182654:183055:-1 // ensembl // 11 // --- /// GENEFINDER00000020859 // cdna:GeneFinder chromosome:SGD1:XVI:182654:183055:-1 // ensembl // 11 // --- /// YPL192C // cdna:known chromosome:SGD1:XVI:182654:183055:-1 gene:YPL192C // ensembl // 11 // --- --- No cerevisiae_gene -1.92196223301987 -2.27229708897342 1.47304663642753 -3.71590835752209 1.37255351012617 Max fold change at or above threshold 4 3.71590835752209 Max fold change at or above threshold 0.451454461484507 -0.649670051417794 -0.985897500746293 1.18411309067958 111.853110313416 73.8240115068168 0.660008571062171 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771772_at YGL119W.S1 Protein required for ubiquinone (coenzyme Q) biosynthesis, which in turn is required for respiratory growth; has similarity to prokaryotic proteins involved in early steps of ubiquinone biosynthesis 3.7152693092902 541.881225585938 1562.88610839844 ABC1 6744 // ubiquinone biosynthesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5739 // mitochondrion // inferred from sequence similarity --- 1543.59167480469 415.472351074219 668.290100097656 1582.18054199219 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL119W /GEN=ABC1 /DB_XREF=GI:6321319 /SEG=NC_001139:+284446,285951 /DEF=Protein required for ubiquinone (coenzyme Q) biosynthesis, which in turn is required for respiratory growth; has similarity to prokaryotic proteins involved in early steps of ubiquinone biosynthesis /NOTE=Abc1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11279158]; go_component: mitochondrion [goid GO:0005739] [evidence ISS] [pmid 1648478]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ubiquinone biosynthesis [goid GO:0006744] [evidence IMP] [pmid 11279158] --- --- --- --- --- --- S0003087 // ABC1 SGDID:S0003087, Chr VII from 284448-285953, Verified ORF // sgd // 11 // --- /// GENSCAN00000019261 // cdna:Genscan chromosome:SGD1:VII:284715:285953:1 // ensembl // 11 // --- /// GENEFINDER00000021626 // cdna:GeneFinder chromosome:SGD1:VII:284829:285953:1 // ensembl // 11 // --- /// YGL119W // cdna:known chromosome:SGD1:VII:284448:285953:1 gene:YGL119W // ensembl // 11 // --- --- No cerevisiae_gene -1.24116668521776 -3.7152693092902 1.01137317742687 -2.30976289276038 1.02499940095387 Max fold change at or above threshold 4 3.7152693092902 Max fold change at or above threshold 0.820522968487908 -1.06390847724135 -0.641597019333832 0.884982528087269 1052.38366699219 598.652355482159 0.568853712062222 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770942_at YPL045W.S1 Subunit of the homotypic vacuole fusion and vacuole protein sorting (HOPS) complex; part of the Class C Vps complex essential for membrane docking and fusion at both the Golgi-to-endosome and endosome-to-vacuole stages of protein transport 3.71504244965274 121.657039642334 425.818542480469 VPS16 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6895 // Golgi to endosome transport // inferred from genetic interaction /// 7033 // vacuole organization and biogenesis // inferred from mutant phenotype /// 42145 // homotypic vacuole fusion, non-autophagic // inferred from direct assay /// 45324 // late endosome to vacuole transport // inferred from genetic interaction 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 5774 // vacuolar membrane // inferred from direct assay /// 30897 // HOPS complex // inferred from physical interaction --- 403.219146728516 134.777191162109 108.536888122559 448.417938232422 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL045W /GEN=VPS16 /DB_XREF=GI:6325212 /SEG=NC_001148:+467255,469651 /DEF=vacuolar sorting protein /NOTE=Vps16p; go_component: insoluble fraction [goid GO:0005626] [evidence IDA] [pmid 9362071]; go_component: vacuolar membrane [goid GO:0005774] [evidence IDA] [pmid 9362071]; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 10944212]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi to endosome transport [goid GO:0006895] [evidence IGI] [pmid 11422941]; go_process: homotypic vacuole fusion, non-autophagic [goid GO:0042145] [evidence IDA] [pmid 10944212]; go_process: late endosome to vacuole transport [goid GO:0045324] [evidence IGI] [pmid 11422941]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 9362071]; go_process: vacuole organization and biogenesis [goid GO:0007033] [evidence IMP] [pmid 9362071] --- --- --- --- --- --- S0005966 // VPS16 SGDID:S0005966, Chr XVI from 467257-469653, Verified ORF // sgd // 11 // --- /// GENSCAN00000017154 // cdna:Genscan chromosome:SGD1:XVI:467257:469653:1 // ensembl // 11 // --- /// YPL045W // cdna:known chromosome:SGD1:XVI:467257:469653:1 gene:YPL045W // ensembl // 11 // --- --- No cerevisiae_gene -1.70018805071167 -2.99174617939267 -1.11718589611555 -3.71504244965274 1.112094854301 Max fold change at or above threshold 4 3.71504244965274 Max fold change at or above threshold 0.731949995995245 -0.785535570088386 -0.93387036011091 0.987455934204051 273.737791061401 176.899182151174 0.646235879471588 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776525_at YAR018C.S1 Nonessential protein kinase with unknown cellular role 3.71423429304437 111.58655166626 241.135650634766 KIN3 7059 // chromosome segregation // inferred from mutant phenotype --- 4672 // protein kinase activity // inferred from sequence similarity 229.722778320313 61.8492965698242 161.323806762695 252.548522949219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR018C /GEN=KIN3 /DB_XREF=GI:6319327 /SEG=NC_001133:-170393,171700 /DEF=protein kinase /NOTE=Kin3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 2199332]; go_process: chromosome segregation [goid GO:0007059] [evidence IMP] [pmid 12386167] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 7.0E-46 /// hanks // 2.1.5 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DmCamKII // 1.0E-60 --- --- S0000071 // KIN3 SGDID:S0000071, Chr I from 171698-170391, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020388 // cdna:Genscan chromosome:SGD1:I:170391:171698:-1 // ensembl // 11 // --- /// YAR018C // cdna:known chromosome:SGD1:I:170391:171698:-1 gene:YAR018C // ensembl // 11 // --- --- No cerevisiae_gene 1.28561301968395 -3.71423429304437 1.04219171534559 -1.42398560342821 1.09936213028505 Max fold change at or above threshold 4 3.71423429304437 Max fold change at or above threshold 0.623256710235097 -1.33748139847517 -0.175633434480802 0.889858122720872 176.361101150513 85.617493231114 0.485466991715169 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779383_at SPBC119.01.S1 --- 3.71310907096496 --- --- --- --- 5.88742303848267 1.58557772636414 5.95291471481323 4.55704498291016 0.466064006090164 0.696289002895355 0.274170011281967 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC119.01 /GEN=rpn3 /DEF=19S proteasome regulatory subunit --- --- --- --- --- --- SPBC119.01 // |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.71654767186979 -3.71310907096496 1.07428964913317 1.01112399701915 -1.29193875868281 Max fold change at or above threshold 3 3.71310907096496 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777378_at SPAC688.06c.S1 --- 3.710125724278 --- --- --- --- 0.286186903715134 1.06178939342499 0.492736667394638 0.405027747154236 0.870360970497131 0.366210997104645 0.805419981479645 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC688.06c /GEN=slx4 /DEF=stucture-specific endonuclease (contributes_to) (PMID 14528010) --- --- --- --- --- --- SPAC688.06c // |slx4||structure-specific endonuclease |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.45703996677717 3.710125724278 1.81990596739152 1.72173031329589 1.4152560508408 Max fold change at or above threshold 0 3.710125724278 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769712_at SPAC19A8.06.S1 --- 3.7094335662549 --- --- --- --- 1.12913346290588 0.542405784130096 0.368027538061142 0.695978343486786 0.850341975688934 0.943848013877869 0.904784977436066 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19A8.06 /DEF=conserved fungal protein --- --- --- --- --- --- SPAC19A8.06 // |||oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 2.6435161929159 -2.08171353614301 3.7094335662549 -3.06806786485172 -1.62236867493467 Max fold change at or above threshold 0 3.7094335662549 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780157_at SPBC14C8.14c.S1 --- 3.70941154585193 --- --- --- --- 6.1661171913147 6.89568424224854 4.38393259048462 2.79430985450745 0.303710997104645 0.601073980331421 0.303710997104645 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14C8.14c /GEN=pol5 /DEF=DNA polymerase V --- --- --- --- --- --- AB012696 // Schizosaccharomyces pombe pol5+ mRNA for DNA polymerase V, complete cds. // gb // 11 // --- /// SPBC14C8.14c // |pol5||DNA polymerase V|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- SPBC14C8.13 // sanger // 3 // Negative Strand Matching Probes No No -3.70941154585193 1.11831871310546 -1.91111790617861 -1.40652646089913 -2.2066690926807 Max fold change at or above threshold 4 3.70941154585193 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770771_at SPAC3H1.03.S1 --- 3.70920068552581 --- --- --- --- 0.867873549461365 3.21911716461182 1.11127591133118 0.383015245199203 0.904784977436066 0.805419981479645 0.953857004642487 0.989257991313934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H1.03 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC3H1.03 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.91084408627269 3.70920068552581 -1.5214893027629 1.28045832485721 -2.26589818640245 Max fold change at or above threshold 1 3.70920068552581 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779076_at SPAC694.05c.S1 --- 3.70778547469878 --- --- --- --- 6.96958780288696 11.0179996490479 6.03271627426147 6.13611793518066 0.111571997404099 0.171387001872063 0.171387001872063 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC694.05c /GEN=rps2502 /DEF=40S ribosomal protein S25 --- --- --- --- --- --- AB000398 // Fission yeast mRNA for ribosomal protein S31, partial cds. // gb // 10 // --- /// SPAC694.05c // |rps2502|rps25-2, rps25|40S ribosomal protein S25|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -3.70778547469878 1.58086818914656 -1.52331467059119 -1.15529845695257 -1.13583015784747 Max fold change at or above threshold 4 3.70778547469878 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1774072_at YJR095W.S1 Mitochondrial succinate-fumarate transporter, transports succinate into and fumarate out of the mitochondrion; required for ethanol and acetate utilization 3.70668680593621 2741.51403808594 806.265045166016 SFC1 15741 // fumarate transport // inferred from direct assay /// 15744 // succinate transport // inferred from direct assay 5743 // mitochondrial inner membrane // inferred from sequence similarity 5469 // succinate:fumarate antiporter activity // inferred from direct assay 751.602172851563 2785.95385742188 2697.07421875 860.927917480469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR095W /GEN=SFC1 /DB_XREF=GI:6322555 /SEG=NC_001142:+609690,610658 /DEF=Mitochondrial succinate-fumarate transporter, transports succinate into and fumarate out of the mitochondrion; required for ethanol and acetate utilization /NOTE=Sfc1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence ISS] [pmid 7908717]; go_function: succinate:fumarate antiporter activity [goid GO:0005469] [evidence IDA] [pmid 9395087]; go_process: fumarate transport [goid GO:0015741] [evidence IDA] [pmid 9395087]; go_process: succinate transport [goid GO:0015744] [evidence IDA] [pmid 9395087] --- --- --- --- --- S0003856 // span:69-91,106-128 // numtm:2 S0003856 // SFC1 SGDID:S0003856, Chr X from 609690-610658, Verified ORF // sgd // 11 // --- /// GENSCAN00000024207 // cdna:Genscan chromosome:SGD1:X:609732:610658:1 // ensembl // 11 // --- /// GENEFINDER00000024540 // cdna:GeneFinder chromosome:SGD1:X:609732:610658:1 // ensembl // 11 // --- /// YJR095W // cdna:known chromosome:SGD1:X:609690:610658:1 gene:YJR095W // ensembl // 11 // --- --- No cerevisiae_gene -1.26367318138504 3.70668680593621 -1.21512123237671 3.58843323791542 1.1454569299795 Max fold change at or above threshold 4 3.70668680593621 Max fold change at or above threshold -0.913738720769235 0.904601173308247 0.82515896378566 -0.816021416324672 1773.88954162598 1118.7961564262 0.630702267628623 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772154_at SPAC25B8.06c.S1 --- 3.70635151622055 --- --- --- --- 2.43297815322876 1.04871845245361 0.671306729316711 6.47445249557495 0.366210997104645 0.567627012729645 0.334473013877869 0.018554700538516 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25B8.06c /DEF=serine-tRNA ligase (predicted) --- --- --- --- --- --- SPAC25B8.06c // |||serine-tRNA ligase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.53478110469247 -2.31995360388338 3.70635151622055 -3.62424216379473 2.66112233148614 Max fold change at or above threshold 1 3.70635151622055 Max fold change at or above threshold AAAPAP No 4 0 AAAP 3 1 0 No No x = 1
1773109_at YKR034W.S1 Negative regulator of genes in multiple nitrogen degradation pathways; expression is regulated by nitrogen levels and by Gln3p; member of the GATA-binding family, forms homodimers and heterodimers with Deh1p 3.70621914033411 31.8103504180908 45.6242961883545 DAL80 6350 // transcription // traceable author statement /// 6350 // transcription // inferred from direct assay /// 6808 // regulation of nitrogen utilization // inferred from genetic interaction /// 6808 // regulation of nitrogen utilization // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 3700 // transcription factor activity // traceable author statement /// 3700 // transcription factor activity // inferred from direct assay 46.4248008728027 26.7932739257813 36.8274269104004 44.8237915039063 0.00195312988944352 0.018554700538516 0.00195312988944352 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR034W /GEN=DAL80 /DB_XREF=GI:6322885 /SEG=NC_001143:+506540,507349 /DEF=Negative regulator of genes in multiple nitrogen degradation pathways; expression is regulated by nitrogen levels and by Gln3p; member of the GATA-binding family, forms homodimers and heterodimers with Deh1p /NOTE=Dal80p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11443099]; go_function: transcription factor activity [goid GO:0003700] [evidence TAS] [pmid 11443099]; go_process: regulation of nitrogen utilization [goid GO:0006808] [evidence IGI,IMP] [pmid 12489124]; go_process: transcription [goid GO:0006350] [evidence TAS] [pmid 11443099] --- --- --- --- --- --- S0001742 // DAL80 SGDID:S0001742, Chr XI from 506540-507349, Verified ORF // sgd // 11 // --- /// GENSCAN00000018445 // cdna:Genscan chromosome:SGD1:XI:506540:507349:1 // ensembl // 11 // --- /// YKR034W // cdna:known chromosome:SGD1:XI:506540:507349:1 gene:YKR034W // ensembl // 11 // --- YKR033C // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene -3.70621914033411 -1.73270355095095 1.34224427429356 -1.26060397827283 -1.035717847937 Max fold change at or above threshold 4 3.70621914033411 Max fold change at or above threshold 0.85735928170574 -1.32639950190915 -0.210227042404049 0.679267262607457 38.7173233032227 8.98978728526253 0.232190309615599 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1774528_at SPAC17H9.13c.S1 --- 3.70579718966104 --- --- --- --- 0.939124405384064 1.02085340023041 3.48020458221436 1.2898383140564 0.870360970497131 0.753906011581421 0.432372987270355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17H9.13c /DEF=glutamate 5-kinase (predicted) --- --- --- --- --- --- SPAC17H9.13c // |||glutamate 5-kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 2.14065251649018 1.08702680324117 -3.43538639910474 3.70579718966104 1.37344776332259 Max fold change at or above threshold 1 3.70579718966104 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775968_at YNL064C.S1 Protein chaperone involved in regulation of the HSP90 and HSP70 functions; involved in protein translocation across membranes; member of the DnaJ family 3.70442053508245 4226.49658203125 1246.52239990234 YDJ1 6626 // protein-mitochondrial targeting // inferred from mutant phenotype /// 30433 // ER-associated protein catabolism // inferred from mutant phenotype /// 30433 // ER-associated protein catabolism // inferred from genetic interaction 5829 // cytosol // inferred from direct assay 1671 // ATPase stimulator activity // inferred from direct assay /// 30188 // chaperone regulator activity // inferred from genetic interaction /// 30188 // chaperone regulator activity // inferred from physical interaction /// 30192 // Hsp70/Hsc70 protein regulator activity // inferred from direct assay 1190.9306640625 4411.7080078125 4041.28515625 1302.11413574219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL064C /GEN=YDJ1 /DB_XREF=GI:6324265 /SEG=NC_001146:-505866,507095 /DEF=yeast dnaJ homolog (nuclear envelope protein); heat shock protein /NOTE=Ydj1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 8144572]; go_function: ATPase stimulator activity [goid GO:0001671] [evidence IDA] [pmid 1400408]; go_function: Hsp70/Hsc70 protein regulator activity [goid GO:0030192] [evidence IDA] [pmid 8144572]; go_function: chaperone regulator activity [goid GO:0030188] [evidence IGI,IPI] [pmid 7761857]; go_process: protein-mitochondrial targeting [goid GO:0006626] [evidence IMP] [pmid 1729605] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 8.00000002536861E-29 --- S0005008 // YDJ1 SGDID:S0005008, Chr XIV from 507096-505867, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019982 // cdna:Genscan chromosome:SGD1:XIV:505867:507096:-1 // ensembl // 11 // --- /// GENEFINDER00000020403 // cdna:GeneFinder chromosome:SGD1:XIV:505867:507096:-1 // ensembl // 11 // --- /// YNL064C // cdna:known chromosome:SGD1:XIV:505867:507096:-1 gene:YNL064C // ensembl // 11 // --- --- No cerevisiae_gene 2.95422476021166 3.70442053508245 -1.02295897690933 3.39338408036651 1.09335847588341 Max fold change at or above threshold 4 3.70442053508245 Max fold change at or above threshold -0.89457792743532 0.969601544195678 0.755201540095479 -0.830225156855837 2736.5094909668 1727.71849103783 0.631358486692999 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774694_at YDL063C.S1 Hypothetical protein 3.70433792124366 69.287467956543 122.779041290283 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 111.173271179199 76.5563812255859 62.0185546875 134.384811401367 0.000244141003349796 0.00292969006113708 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL063C /GEN=UBC9 /DB_XREF=GI:6320141 /SEG=NC_001136:-338272,340134 /DEF=Hypothetical ORF /NOTE=Ydl063cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002221 // YDL063C SGDID:S0002221, Chr IV from 340134-338272, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023550 // cdna:GeneFinder chromosome:SGD1:IV:338272:339279:-1 // ensembl // 11 // --- /// GENSCAN00000025053 // cdna:Genscan chromosome:SGD1:IV:338272:340134:-1 // ensembl // 11 // --- /// YDL063C // cdna:known chromosome:SGD1:IV:338272:340134:-1 gene:YDL063C // ensembl // 11 // --- --- No cerevisiae_gene 3.70433792124366 -1.45217510806328 -1.2685389401599 -1.79258081294188 1.20878705803982 Max fold change at or above threshold 4 3.70433792124366 Max fold change at or above threshold 0.460951446543076 -0.592990960992949 -1.03560818982035 1.16764770427022 96.0332546234131 32.8451438200906 0.342018438809455 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778216_at YDL058W.S1 Essential protein involved in intracellular protein transport, coiled-coil protein necessary for transport from ER to Golgi; required for assembly of the ER-to-Golgi SNARE complex 3.7040971606918 145.670612335205 426.916458129883 USO1 6461 // protein complex assembly // inferred from direct assay /// 6888 // ER to Golgi transport // inferred from mutant phenotype 5625 // soluble fraction // inferred from direct assay --- 458.679290771484 167.510971069336 123.830253601074 395.153625488281 0.000244141003349796 0.014160200022161 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL058W /GEN=USO1 /DB_XREF=GI:6320145 /SEG=NC_001136:+345665,351037 /DEF=involved intracellular protein transport, coiled-coil protein necessary for protein transport from ER to Golgi /NOTE=Uso1p; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 8166741]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 2010462]; go_process: protein complex assembly [goid GO:0006461] [evidence IDA] [pmid 8603910] --- --- --- --- scop // a.2.5.Prefoldin // All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin // 0.159999996423721 /// scop // a.2.5.Prefoldin // All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin // 8.10000038146973 /// scop // a.2.7.Seryl-tRNA synthetase (SerRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) // 5.09999990463257 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 6.40000009536743 --- S0002216 // USO1 SGDID:S0002216, Chr IV from 345665-351037, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023411 // cdna:GeneFinder chromosome:SGD1:IV:345665:351037:1 // ensembl // 11 // --- /// GENSCAN00000025055 // cdna:Genscan chromosome:SGD1:IV:345665:351037:1 // ensembl // 11 // --- /// YDL058W // cdna:known chromosome:SGD1:IV:345665:351037:1 gene:YDL058W // ensembl // 11 // --- --- No cerevisiae_gene -3.02044770341018 -2.73820447606162 -1.19068749474173 -3.7040971606918 -1.16076194468596 Max fold change at or above threshold 4 3.7040971606918 Max fold change at or above threshold 1.04223867647366 -0.718155523201821 -0.982247721650648 0.658164568378814 286.293535232544 165.399499586981 0.577726980291869 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1776611_at YBL071C-B.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 3.70360247915612 11.8889441490173 25.0226469039917 --- --- --- --- 25.9991798400879 13.0311069488525 10.7467813491821 24.0461139678955 0.0375977009534836 0.014160200022161 0.014160200022161 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL071C-B /GEN=RPS8A /DB_XREF=GI:33438762 /SEG=NC_001134:-89456,89554 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ybl071c-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028597 // YBL071C-B SGDID:S0028597, Chr II from 89554-89456, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YBL071C-B // cdna:known chromosome:SGD1:II:89456:89554:-1 gene:YBL071C-B // ensembl // 11 // --- --- No cerevisiae_gene 1.47339304109776 -1.99516280099115 -3.70360247915612 -2.41925270416584 -1.08122168408583 Max fold change at or above threshold 4 3.70360247915612 Max fold change at or above threshold 0.982035991716776 -0.706213445537485 -1.00359852661268 0.727775980433389 18.4557955265045 7.68137255376575 0.416203817534415 PPPPPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1770943_at YMR239C.S1 RNAase III; cleaves a stem-loop structure at the 3' end of U2 snRNA to ensure formation of the correct U2 3' end 3.70333882997711 168.448890686035 600.048553466797 RNT1 6365 // 35S primary transcript processing // traceable author statement 5654 // nucleoplasm // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay 4525 // ribonuclease III activity // traceable author statement 570.844116210938 182.754684448242 154.143096923828 629.252990722656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR239C /GEN=RNT1 /DB_XREF=GI:6323895 /SEG=NC_001145:-748261,749676 /DEF=RNAase III; cleaves a stem-loop structure at the 3' end of U2 snRNA to ensure formation of the correct U2 3' end /NOTE=Rnt1p; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 10690410]; go_function: ribonuclease III activity [goid GO:0004525] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0004852 // RNT1 SGDID:S0004852, Chr XIII from 749676-748261, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018916 // cdna:Genscan chromosome:SGD1:XIII:748261:749676:-1 // ensembl // 11 // --- /// GENEFINDER00000021922 // cdna:GeneFinder chromosome:SGD1:XIII:748261:749676:-1 // ensembl // 11 // --- /// YMR239C // cdna:known chromosome:SGD1:XIII:748261:749676:-1 gene:YMR239C // ensembl // 11 // --- --- No cerevisiae_gene 1.0469611481592 -3.12355394847679 -1.29790483105343 -3.70333882997711 1.10232018313409 Max fold change at or above threshold 4 3.70333882997711 Max fold change at or above threshold 0.744609768551217 -0.80406287314145 -0.918237543225096 0.97769064781533 384.248722076416 250.59487803602 0.652168409778561 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779386_at SPCC4G3.03.S1 --- 3.70290765351288 --- --- --- --- 13.3945941925049 17.2536449432373 14.2233009338379 7.27344799041748 0.018554700538516 0.171387001872063 0.0952147990465164 0.194580003619194 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4G3.03 /DEF=WD repeat protein --- --- --- --- --- --- SPCC4G3.03 // |||WD repeat protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.68380654108535 1.28810508890906 -3.70290765351288 1.06186874566134 -1.84157420389227 Max fold change at or above threshold 4 3.70290765351288 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1779787_at YBR191W.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl21Ap and has similarity to rat L21 ribosomal protein /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl21Bp and has similarity to rat L21 ribosomal protein 3.70022550936699 1171.79110717773 3063.01550292969 RPL21B /// RPL21A 6412 // protein biosynthesis // traceable author statement /// 30447 // filamentous growth // inferred from mutant phenotype 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3311.6044921875 894.973693847656 1448.60852050781 2814.42651367188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR191W /GEN=RPL21A /DB_XREF=GI:6319668 /SEG=NC_001134:+606227,607097 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl21Bp and has similarity to rat L21 ribosomal protein /NOTE=Rpl21ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0000395 // RPL21A SGDID:S0000395, Chr II from 606265-606275,606664-607135, intron sequence removed, Verified ORF // sgd // 10 // --- /// GENSCAN00000021292 // cdna:Genscan chromosome:SGD1:II:606692:607135:1 // ensembl // 10 // --- /// GENEFINDER00000022147 // cdna:GeneFinder chromosome:SGD1:II:606692:607135:1 // ensembl // 10 // --- /// YBR191W // cdna:known chromosome:SGD1:II:606265:607135:1 gene:YBR191W // ensembl // 10 // --- --- No cerevisiae_gene 1.26490711079617 -3.70022550936699 -1.72768178011572 -2.28605896300169 -1.17665338785733 Max fold change at or above threshold 4 3.70022550936699 Max fold change at or above threshold 1.05367341785999 -1.07858005871203 -0.590094277305776 0.61500091815782 2117.40330505371 1133.36937887188 0.535263818738174 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779090_at SPCC70.05c.S1 --- 3.69842176201028 --- --- --- --- 6.36459350585938 2.20802092552185 13.1002864837646 4.00694561004639 0.398925989866257 0.423828125 0.194580003619194 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC70.05c /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPCC70.05c // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.69842176201028 -2.88248785701845 1.02196415513893 2.05830686149936 -1.58839029157316 Max fold change at or above threshold 3 3.69842176201028 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779436_at SPBC3B9.17.S1 --- 3.69327854295711 --- --- --- --- 1.22146356105804 3.61738014221191 0.772822737693787 2.38549876213074 0.725830018520355 0.696289002895355 0.780517995357513 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B9.17 /GEN=isa2 /DEF=iron-sulfur protein (predicted) (PMID 11941510) --- --- --- --- --- --- SPBC3B9.17 // |isa2||iron-sulfur protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.69327854295711 2.96151294032751 -2.13286934837069 -1.58052228730105 1.95298397609536 Max fold change at or above threshold 1 3.69327854295711 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776620_at YPL038W-A.S1 Identified by fungal homology and RT-PCR 3.690088825037 67.2559108734131 219.385368347168 --- --- --- --- 213.803741455078 76.5718231201172 57.939998626709 224.966995239258 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL038W-A /GEN=ISM1 /DB_XREF=GI:33438894 /SEG=NC_001148:+480177,480368 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ypl038w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028588 // YPL038W-A SGDID:S0028588, Chr XVI from 480179-480370, Uncharacterized ORF // sgd // 11 // --- /// YPL038W-A // cdna:known chromosome:SGD1:XVI:480179:480370:1 gene:YPL038W-A // ensembl // 11 // --- --- No cerevisiae_gene -2.45224839078135 -2.79219865406217 -1.30958011838319 -3.690088825037 1.05221262129562 Max fold change at or above threshold 4 3.690088825037 Max fold change at or above threshold 0.798417995212404 -0.756116783314156 -0.967174236374821 0.924873024476573 143.320639610291 88.2784484661282 0.615950701212122 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777819_at YJR043C.S1 Third subunit of DNA polymerase delta, involved in chromosomal DNA replication; required for error-prone DNA synthesis in the presence of DNA damage and processivity; interacts with Pol31p, PCNA (Pol30p), and Pol1p 3.68948889855597 64.6793346405029 233.319374084473 POL32 6272 // leading strand elongation // traceable author statement /// 6273 // lagging strand elongation // traceable author statement /// 6280 // mutagenesis // traceable author statement /// 6284 // base-excision repair // traceable author statement /// 6289 // nucleotide-excision repair // traceable author statement /// 6298 // mismatch repair // non-traceable author statement /// 6301 // postreplication repair // traceable author statement 5634 // nucleus // inferred from direct assay /// 5659 // delta DNA polymerase complex // traceable author statement 3891 // delta DNA polymerase activity // traceable author statement 196.157943725586 76.1919708251953 53.1666984558105 270.480804443359 0.000732421991415322 0.129638999700546 0.0952147990465164 0.000244141003349796 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR043C /GEN=POL32 /DB_XREF=GI:6322503 /SEG=NC_001142:-516375,517427 /DEF=Polymerase-associated gene /NOTE=Pol32p; go_component: delta DNA polymerase complex [goid GO:0005659] [evidence TAS] [pmid 9745046]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: delta DNA polymerase activity [goid GO:0003891] [evidence TAS] [pmid 9745046]; go_process: base-excision repair [goid GO:0006284] [evidence TAS] [pmid 9745046]; go_process: lagging strand elongation [goid GO:0006273] [evidence TAS] [pmid 9745046]; go_process: leading strand elongation [goid GO:0006272] [evidence TAS] [pmid 9745046]; go_process: mismatch repair [goid GO:0006298] [evidence NAS] [pmid 10072354]; go_process: mutagenesis [goid GO:0006280] [evidence TAS] [pmid 9745046]; go_process: nucleotide-excision repair [goid GO:0006289] [evidence TAS] [pmid 9745046]; go_process: postreplication repair [goid GO:0006301] [evidence TAS] [pmid 9745046] --- --- --- --- --- --- S0003804 // POL32 SGDID:S0003804, Chr X from 517427-516375, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000024167 // cdna:Genscan chromosome:SGD1:X:516375:517427:-1 // ensembl // 10 // --- /// GENEFINDER00000024416 // cdna:GeneFinder chromosome:SGD1:X:516375:517427:-1 // ensembl // 10 // --- /// YJR043C // cdna:known chromosome:SGD1:X:516375:517427:-1 gene:YJR043C // ensembl // 10 // --- --- No cerevisiae_gene 1.01094395533335 -2.57452250678257 -1.66997190690854 -3.68948889855597 1.3788929436462 Max fold change at or above threshold 4 3.68948889855597 Max fold change at or above threshold 0.460465709503155 -0.710905562917483 -0.935728835226144 1.18616868864047 148.999354362488 102.414986371043 0.687351880209401 PPAPAP Called_P_>2EXP 2 0 PAAP 2 2 0 Yes No 1 < x = 2
1773828_at YNL066W.S1 Cell wall protein related to glucanases, possibly involved in cell wall septation; member of the SUN family 3.68894538083875 274.227661132813 264.258087158203 SUN4 7005 // mitochondrion organization and biogenesis // traceable author statement 5759 // mitochondrial matrix // traceable author statement /// 9277 // cell wall (sensu Fungi) // inferred from direct assay 15926 // glucosidase activity // inferred from sequence similarity 261.222076416016 171.600219726563 376.855102539063 267.294097900391 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL066W /GEN=SUN4 /DB_XREF=GI:6324263 /SEG=NC_001146:+501514,502776 /DEF=Protein involved in the aging process. Related to glucanases. /NOTE=Sun4p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 11958935]; go_component: mitochondrial matrix [goid GO:0005759] [evidence TAS] [pmid 11958935]; go_function: glucosidase activity [goid GO:0015926] [evidence ISS] [pmid 9748433]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence TAS] [pmid 11958935] --- --- --- --- --- --- S0005010 // SUN4 SGDID:S0005010, Chr XIV from 501514-502776, Verified ORF // sgd // 11 // --- /// GENSCAN00000019980 // cdna:Genscan chromosome:SGD1:XIV:501514:502776:1 // ensembl // 11 // --- /// GENEFINDER00000020689 // cdna:GeneFinder chromosome:SGD1:XIV:501514:502776:1 // ensembl // 11 // --- /// YNL066W // cdna:known chromosome:SGD1:XIV:501514:502776:1 gene:YNL066W // ensembl // 11 // --- --- No cerevisiae_gene 3.68894538083875 -1.52227122338341 -1.205876073516 1.44266176775539 1.02324467199589 Max fold change at or above threshold 4 3.68894538083875 Max fold change at or above threshold -0.0954527512168336 -1.16201159968572 1.28065606578878 -0.0231917148862228 269.242874145508 84.0289842591533 0.312093623743376 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778587_at SPBC337.02c.S1 --- 3.68705660104752 --- --- --- --- 0.368705660104752 0.101987354457378 0.175637230277061 0.159574747085571 0.943848013877869 0.865234375 0.870360970497131 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC337.02c /DEF=pseudogene --- --- --- --- --- --- SPBC337.02c // |||pseudogene|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.42374622616811 -3.61520957246555 -3.68705660104752 -2.09924547046849 -2.31055143021492 Max fold change at or above threshold 0 3.68705660104752 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770624_at YGR078C.S1 Part of the heteromeric co-chaperone GimC/prefoldin complex, which promotes efficient protein folding 3.68691759876648 192.808334350586 169.009132385254 PAC10 7021 // tubulin folding // inferred from mutant phenotype /// 7021 // tubulin folding // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay /// 16272 // prefoldin complex // inferred from sequence similarity /// 16272 // prefoldin complex // inferred from physical interaction 15631 // tubulin binding // inferred from direct assay 159.782684326172 148.912399291992 236.70426940918 178.235580444336 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR078C /GEN=PAC10 /DB_XREF=GI:6321515 /SEG=NC_001139:-639774,640373 /DEF=Polypeptide 3 of a Yeast Non-native Actin Binding Complex, homolog of a component of the bovine NABC complex /NOTE=Pac10p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9463374]; go_component: prefoldin complex [goid GO:0016272] [evidence IPI] [pmid 9463374]; go_component: prefoldin complex [goid GO:0016272] [evidence ISS] [pmid 9630229]; go_function: tubulin binding [goid GO:0015631] [evidence IDA] [pmid 9463374]; go_process: tubulin folding [goid GO:0007021] [evidence IGI,IMP] [pmid 9611197] --- --- --- --- --- --- S0003310 // PAC10 SGDID:S0003310, Chr VII from 640375-639776, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019397 // cdna:Genscan chromosome:SGD1:VII:639776:640375:-1 // ensembl // 11 // --- /// GENEFINDER00000021669 // cdna:GeneFinder chromosome:SGD1:VII:639776:640570:-1 // ensembl // 11 // --- /// YGR078C // cdna:known chromosome:SGD1:VII:639776:640375:-1 gene:YGR078C // ensembl // 11 // --- --- No cerevisiae_gene 3.68691759876648 -1.07299785031913 -1.04113621904001 1.48141377401061 1.11548745845636 Max fold change at or above threshold 4 3.68691759876648 Max fold change at or above threshold -0.540076647426848 -0.81796992913951 1.42638436496094 -0.0683377883945808 180.90873336792 39.1167608197863 0.216223728349439 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773783_at YDR497C.S1 Myo-inositol transporter with strong similarity to the minor myo-inositol transporter Itr2p, member of the sugar transporter superfamily; expression is repressed by inositol and choline via Opi1p and derepressed via Ino2p and Ino4p 3.68493416342315 6840.435546875 2333.28430175781 ITR1 15798 // myo-inositol transport // inferred from mutant phenotype 16020 // membrane // inferred from sequence similarity 5365 // myo-inositol transporter activity // inferred from sequence similarity /// 5365 // myo-inositol transporter activity // inferred from mutant phenotype 2328.98681640625 8582.1630859375 5098.7080078125 2337.58178710938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR497C /GEN=ITR1 /DB_XREF=GI:6320705 /SEG=NC_001136:-1443701,1445455 /DEF=member of sugar transporter superfamily /NOTE=Itr1p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 2040626]; go_function: myo-inositol transporter activity [goid GO:0005365] [evidence IMP,ISS] [pmid 2040626]; go_process: myo-inositol transport [goid GO:0015798] [evidence IMP] [pmid 2040626] --- --- --- --- --- S0002905 // span:85-107,130-152,159-178,183-205,218-240,244-266,335-357,372-394,403-425,445-467,480-502,507-529 // numtm:12 S0002905 // ITR1 SGDID:S0002905, Chr IV from 1445457-1443703, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025489 // cdna:Genscan chromosome:SGD1:IV:1443703:1445457:-1 // ensembl // 11 // --- /// YDR497C // cdna:known chromosome:SGD1:IV:1443703:1445457:-1 gene:YDR497C // ensembl // 11 // --- GENEFINDER00000023422 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.12958680426043 3.68493416342315 1.12293142324622 2.18923867318411 1.00369043338613 Max fold change at or above threshold 4 3.68493416342315 Max fold change at or above threshold -0.761393111115309 1.34728399634961 0.172603855967891 -0.758494741202194 4586.85992431641 2965.44987726874 0.64650979672345 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772931_at SPAC16E8.12c.S1 --- 3.68485356642827 --- --- --- --- 1.63037395477295 0.534166812896729 1.61932551860809 1.73488116264343 0.753906011581421 0.985840022563934 0.5 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16E8.12c /DEF=sequence orphan --- --- --- --- --- --- SPAC16E8.12c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.68485356642827 -3.05218129507449 2.68409033611356 -1.00682286299938 1.06410014559208 Max fold change at or above threshold 0 3.68485356642827 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772264_at YLR009W.S1 Ribosomal Like Protein 24 3.68346939943384 290.790786743164 825.502593994141 RLP24 42273 // ribosomal large subunit biogenesis // inferred from mutant phenotype /// 42273 // ribosomal large subunit biogenesis // inferred from physical interaction 5730 // nucleolus // traceable author statement --- 756.268493652344 205.314178466797 376.267395019531 894.736694335938 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR009W /GEN=RLP24 /DB_XREF=GI:6323037 /SEG=NC_001144:+166536,167135 /DEF=Ribosomal Like Protein 24 /NOTE=Rlp24p; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 11707418]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ribosomal large subunit biogenesis [goid GO:0042273] [evidence IMP,IPI] [pmid 11583614] --- --- --- --- --- --- S0003999 // RLP24 SGDID:S0003999, Chr XII from 166536-167135, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024632 // cdna:GeneFinder chromosome:SGD1:XII:166536:167135:1 // ensembl // 11 // --- /// YLR009W // cdna:known chromosome:SGD1:XII:166536:167135:1 gene:YLR009W // ensembl // 11 // --- GENSCAN00000017756 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 1.8317596669051 -3.68346939943384 1.15169841452902 -2.00992300598644 1.18309396972876 Max fold change at or above threshold 4 3.68346939943384 Max fold change at or above threshold 0.616212998732078 -1.09740561919825 -0.565694356384777 1.04688697685095 558.146690368652 321.515131442127 0.576040558853387 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771788_at YAL007C.S1 Protein that forms a heterotrimeric complex with Erp1p, Emp24p, and Erv25p; member, along with Emp24p and Erv25p, of the p24 family involved in ER to Golgi transport and localized to COPII-coated vesicles 3.68280470265972 438.480209350586 1301.19543457031 ERP2 6888 // ER to Golgi transport // inferred from physical interaction 30138 // COPII-coated vesicle // inferred from direct assay --- 1237.4580078125 336.009674072266 540.950744628906 1364.93286132813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL007C /GEN=ERP2 /DB_XREF=GI:6319312 /SEG=NC_001133:-137702,138349 /DEF=Protein that forms a heterotrimeric complex with Erp1p, Emp24p, and Erv25p; member, along with Emp24p and Erv25p, of the p24 family involved in ER to Golgi transport and localized to COPII-coated vesicles /NOTE=Erp2p; go_component: COPII-coated vesicle [goid GO:0030138] [evidence IDA] [pmid 11157978]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IPI] [pmid 11157978] --- --- --- --- --- S0000005 // span:5-24,181-203 // numtm:2 S0000005 // ERP2 SGDID:S0000005, Chr I from 138347-137700, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000018226 // cdna:GeneFinder chromosome:SGD1:I:137700:138347:-1 // ensembl // 10 // --- /// GENSCAN00000020374 // cdna:Genscan chromosome:SGD1:I:137700:138347:-1 // ensembl // 10 // --- /// YAL007C // cdna:known chromosome:SGD1:I:137700:138347:-1 gene:YAL007C // ensembl // 10 // --- --- No cerevisiae_gene -1.02600077588274 -3.68280470265972 -1.05405676311575 -2.28756133548055 1.10301347820357 Max fold change at or above threshold 4 3.68280470265972 Max fold change at or above threshold 0.724030863641905 -1.05137875945526 -0.647745700060259 0.975093595873611 869.837821960449 507.74104297558 0.583719206220797 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778893_at SPAC1486.04c.S1 --- 3.68275852540045 --- --- --- --- 1.7952299118042 0.487468808889389 0.789368271827698 2.94403839111328 0.753906011581421 0.805419981479645 0.753906011581421 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1486.04c /GEN=alm1 /DEF=coiled-coil (PMID 10660053) --- --- --- --- --- --- AF010473 // Schizosaccharomyces pombe myosin-like protein Sp8 (sp8) mRNA, partial cds. // gb // 11 // --- /// SPAC1486.04c // |alm1||medial ring protein Alm1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.35884448028954 -3.68275852540045 -2.38812682564804 -2.27426155303599 1.6399227596172 Max fold change at or above threshold 1 3.68275852540045 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773329_at YJR073C.S1 Phospholipid methyltransferase (methylene-fatty-acyl-phospholipid synthase), catalyzes the last two steps in phosphatidylcholine biosynthesis 3.68251005151431 7148.54565429688 5343.53588867188 OPI3 6656 // phosphatidylcholine biosynthesis // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5783 // endoplasmic reticulum // traceable author statement 773 // phosphatidyl-N-methylethanolamine N-methyltransferase activity // traceable author statement 6092.38427734375 8733.8076171875 5563.28369140625 4594.6875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR073C /GEN=OPI3 /DB_XREF=GI:6322533 /SEG=NC_001142:-572229,572849 /DEF=Phospholipid methyltransferase (methylene-fatty-acyl-phospholipid synthase), catalyzes the last two steps in phosphatidylcholine biosynthesis /NOTE=Opi3p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS]; go_function: phosphatidyl-N-methylethanolamine N-methyltransferase activity [goid GO:0000773] [evidence TAS]; go_process: phosphatidylcholine biosynthesis [goid GO:0006656] [evidence TAS] --- --- --- --- --- --- S0003834 // OPI3 SGDID:S0003834, Chr X from 572849-572229, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024191 // cdna:Genscan chromosome:SGD1:X:572229:572849:-1 // ensembl // 11 // --- /// GENEFINDER00000024526 // cdna:GeneFinder chromosome:SGD1:X:572229:572849:-1 // ensembl // 11 // --- /// YJR073C // cdna:known chromosome:SGD1:X:572229:572849:-1 gene:YJR073C // ensembl // 11 // --- --- No cerevisiae_gene -3.68251005151431 1.43356151214339 -1.21340767899417 -1.09510580716112 -1.32596270744066 Max fold change at or above threshold 4 3.68251005151431 Max fold change at or above threshold -0.0867791808261371 1.40499345741263 -0.385594507045051 -0.932619769541442 6246.04077148438 1770.66080455953 0.283485310029242 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770413_at YGL031C.S1 Ribosomal protein L30 of the large (60S) ribosomal subunit, nearly identical to Rpl24Bp and has similarity to rat L24 ribosomal protein; not essential for translation but may be required for normal translation rate 3.68203044949845 1319.73840332031 3565.39929199219 RPL24A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3723 // RNA binding // inferred from direct assay /// 3735 // structural constituent of ribosome // traceable author statement 3946.16040039063 1071.73486328125 1567.74194335938 3184.63818359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL031C /GEN=RPL24A /DB_XREF=GI:6321407 /SEG=NC_001139:-437470,437937 /DEF=Ribosomal protein L30 of the large (60S) ribosomal subunit, nearly identical to Rpl24Bp and has similarity to rat L24 ribosomal protein; not essential for translation but may be required for normal translation rate /NOTE=Rpl24ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 6337137]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0002999 // RPL24A SGDID:S0002999, Chr VII from 437939-437472, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021445 // cdna:GeneFinder chromosome:SGD1:VII:437472:437939:-1 // ensembl // 11 // --- /// YGL031C // cdna:known chromosome:SGD1:VII:437472:437939:-1 gene:YGL031C // ensembl // 11 // --- --- No cerevisiae_gene 1.13977905614715 -3.68203044949845 -1.86849489355047 -2.51709818513546 -1.239123621867 Max fold change at or above threshold 4 3.68203044949845 Max fold change at or above threshold 1.11494853415516 -1.01650567181591 -0.648704744856738 0.550261882517488 2442.56884765625 1348.57485047388 0.552113342380462 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770925_at YHR049W.S1 Serine hydrolase that localizes to both the nucleus and cytoplasm; sequence is similar to Fsh2p and Fsh3p 3.6791288926594 2237.82104492188 711.150543212891 FSH1 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 17171 // serine hydrolase activity // inferred from direct assay 676.278686523438 2243.91430664063 2231.72778320313 746.022399902344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR049W /GEN=FSH1 /DB_XREF=GI:6321839 /SEG=NC_001140:+206454,207185 /DEF=Serine hydrolase that localizes to both the nucleus and cytoplasm. Sequence similary to Fsh2p and Fsh3p /NOTE=Fsh1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: serine hydrolase activity [goid GO:0017171] [evidence IDA] [pmid 14645503]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001091 // FSH1 SGDID:S0001091, Chr VIII from 206454-207185, Verified ORF // sgd // 11 // --- /// GENSCAN00000016596 // cdna:Genscan chromosome:SGD1:VIII:206454:207185:1 // ensembl // 11 // --- /// GENEFINDER00000020286 // cdna:GeneFinder chromosome:SGD1:VIII:206454:207185:1 // ensembl // 11 // --- /// YHR049W // cdna:known chromosome:SGD1:VIII:206454:207185:1 gene:YHR049W // ensembl // 11 // --- --- No cerevisiae_gene 3.6791288926594 3.31803197610141 -1.19255280230508 3.30001200344761 1.10312865800553 Max fold change at or above threshold 4 3.6791288926594 Max fold change at or above threshold -0.905101989160387 0.872469401318151 0.858650874146463 -0.826018286304227 1474.48579406738 881.897418305751 0.598105062696487 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769495_at YIL010W.S1 Nuclear thiol peroxidase which functions as an alkyl-hydroperoxide reductase during post-diauxic growth 3.67853343673332 305.597381591797 804.572448730469 DOT5 30503 // regulation of cell redox homeostasis // inferred from mutant phenotype /// 30503 // regulation of cell redox homeostasis // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5634 // nucleus // inferred from sequence similarity 8379 // thioredoxin peroxidase activity // inferred from mutant phenotype /// 8379 // thioredoxin peroxidase activity // inferred from direct assay /// 8379 // thioredoxin peroxidase activity // inferred from sequence similarity 729.002075195313 198.177368164063 413.017395019531 880.142822265625 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL010W /GEN=DOT5 /DB_XREF=GI:6322180 /SEG=NC_001141:+334879,335526 /DEF=Nuclear thiol peroxidase which functions as an alkyl-hydroperoxide reductase during post-diauxic growth /NOTE=Dot5p; go_component: nucleus [goid GO:0005634] [evidence IDA,ISS] [pmid 2408019]; go_function: thioredoxin peroxidase activity [goid GO:0008379] [evidence IDA,IMP,ISS] [pmid 10681558]; go_process: regulation of cell redox homeostasis [goid GO:0030503] [evidence IDA,IMP] [pmid 10681558] --- --- --- --- --- --- S0001272 // DOT5 SGDID:S0001272, Chr IX from 334879-335526, Verified ORF // sgd // 11 // --- /// GENSCAN00000016467 // cdna:Genscan chromosome:SGD1:IX:334879:335526:1 // ensembl // 11 // --- /// GENEFINDER00000019124 // cdna:GeneFinder chromosome:SGD1:IX:334879:335526:1 // ensembl // 11 // --- /// YIL010W // cdna:known chromosome:SGD1:IX:334879:335526:1 gene:YIL010W // ensembl // 11 // --- --- No cerevisiae_gene -1.76383186050394 -3.67853343673332 1.8602717521896 -1.76506385441911 1.20732553748879 Max fold change at or above threshold 4 3.67853343673332 Max fold change at or above threshold 0.565776513689807 -1.16106948624218 -0.462165241419967 1.05745821397234 555.084915161133 307.395510110432 0.553781055320517 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777540_at SPBC16G5.07c.S1 --- 3.67846186630272 --- --- --- --- 11.5565071105957 7.82102203369141 11.667932510376 4.22608470916748 0.432372987270355 0.171387001872063 0.149657994508743 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16G5.07c /DEF=prohibitin (predicted) --- --- --- --- --- --- SPBC16G5.07c // |||prohibitin |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.67846186630272 -1.47762109105595 -2.18338849217446 1.00964178870951 -2.73456589394118 Max fold change at or above threshold 4 3.67846186630272 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771844_at SPAC31G5.13.S1 --- 3.67760451005706 --- --- --- --- 24.2013397216797 8.99705791473389 16.338794708252 8.66305255889893 0.018554700538516 0.0952147990465164 0.0375977009534836 0.000244141003349796 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31G5.13 /GEN=rpn11 /DEF=19S proteasome regulatory subunit --- --- --- --- --- --- SPAC31G5.13 // |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory subunit|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -3.67760451005706 -2.6899170763419 -1.56149319862592 -1.48121940166472 -2.7936272528809 Max fold change at or above threshold 4 3.67760451005706 Max fold change at or above threshold PPAPPP No 3 0 PAPP 1 3 0 No No 2 < x = 3
1774715_at YOL136C.S1 6-phosphofructo-2-kinase, has negligible fructose-2,6-bisphosphatase activity, inhibited by phosphoenolpyruvate and sn-glycerol 3-phosphate, expression induced by glucose and sucrose, transcriptional regulation involves protein kinase A 3.67733614366889 212.338966369629 739.249298095703 PFK27 6003 // fructose 2,6-bisphosphate metabolism // inferred from mutant phenotype /// 6110 // regulation of glycolysis // inferred from mutant phenotype 5737 // cytoplasm // inferred from curator 3873 // 6-phosphofructo-2-kinase activity // inferred from sequence similarity 725.012329101563 197.156936645508 227.52099609375 753.486267089844 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL136C /GEN=PFK27 /DB_XREF=GI:6324436 /SEG=NC_001147:-67560,68753 /DEF=6-phosphofructo-2-kinase /NOTE=Pfk27p; go_component: cytoplasm [goid GO:0005737] [evidence IC]; go_function: 6-phosphofructo-2-kinase activity [goid GO:0003873] [evidence ISS] [pmid 8861205]; go_process: fructose 2,6-bisphosphate metabolism [goid GO:0006003] [evidence NAS]; go_process: regulation of glycolysis [goid GO:0006110] [evidence NAS] --- --- --- ec // 6P22_YEAST // (Q12471) 6-phosphofructo-2-kinase 2 (EC 2.7.1.105) (Phosphofructokinase 2 II) (6PF-2-K 2) // 0.0 --- --- S0005496 // PFK27 SGDID:S0005496, Chr XV from 68753-67560, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017361 // cdna:Genscan chromosome:SGD1:XV:67560:68753:-1 // ensembl // 11 // --- /// YOL136C // cdna:known chromosome:SGD1:XV:67560:68753:-1 gene:YOL136C // ensembl // 11 // --- --- No cerevisiae_gene 2.95714967131654 -3.67733614366889 -1.50368065355526 -3.18657329015394 1.03927372934963 Max fold change at or above threshold 4 3.67733614366889 Max fold change at or above threshold 0.817950646670194 -0.914505751106049 -0.814848894691638 0.911403999127493 475.794132232666 304.686105308972 0.640373818565671 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769689_at SPBC19F8.07.S1 --- 3.67726383495345 --- --- --- --- 5.99092102050781 6.33257675170898 1.62917900085449 8.26832485198975 0.398925989866257 0.366210997104645 0.805419981479645 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19F8.07 /GEN=crk1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- L47353 // Schizosaccharomyces pombe MOP1-MCS2 mRNA, complete cds. // gb // 11 // --- /// SPBC19F8.07 // |crk1|mop1, mcs6|cyclin-dependent kinase activating kinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.08321558831545 1.05702891592656 -1.98110519801004 -3.67726383495345 1.38014252294197 Max fold change at or above threshold 3 3.67726383495345 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773375_at YJR069C.S1 Protein of unknown function that is involved in DNA repair; mutant is sensitive to the base analog, 6-N-hydroxylaminopurine, while gene disruption does not increase the rate of spontaneous mutagenesis 3.67654237015874 39.2747354507446 113.594081878662 HAM1 6281 // DNA repair // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 97.2628860473633 26.4549884796143 52.094482421875 129.925277709961 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR069C /GEN=HAM1 /DB_XREF=GI:6322529 /SEG=NC_001142:-568720,569313 /DEF=Protein of unknown function that is involved in DNA repair; mutant is sensitive to the base analog, 6-N-hydroxylaminopurine, while gene disruption does not increase the rate of spontaneous mutagenesis /NOTE=Ham1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 8789257] --- --- --- --- --- --- S0003830 // HAM1 SGDID:S0003830, Chr X from 569313-568720, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024188 // cdna:Genscan chromosome:SGD1:X:568720:569313:-1 // ensembl // 11 // --- /// GENEFINDER00000024383 // cdna:GeneFinder chromosome:SGD1:X:568720:569313:-1 // ensembl // 11 // --- /// YJR069C // cdna:known chromosome:SGD1:X:568720:569313:-1 gene:YJR069C // ensembl // 11 // --- --- No cerevisiae_gene 1.594241680218 -3.67654237015874 1.41019705860505 -1.86704774720099 1.33581557148831 Max fold change at or above threshold 4 3.67654237015874 Max fold change at or above threshold 0.451462429310899 -1.08331636719136 -0.527573956989462 1.15942789486992 76.4344086647034 46.1355719333101 0.603596897513711 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776036_at YMR070W.S1 Nuclear transcription factor with two Cys2-His2 zinc fingers; involved in repression of a subset of hypoxic genes by Rox1p, repression of several DAN/TIR genes during aerobic growth, and repression of ergosterol biosynthetic genes 3.67486299365959 3043.53344726563 1008.76440429688 MOT3 6350 // transcription // inferred from physical interaction /// 6350 // transcription // inferred from mutant phenotype /// 6350 // transcription // inferred from genetic interaction 5634 // nucleus // inferred from direct assay 3677 // DNA binding // inferred from physical interaction /// 16563 // transcriptional activator activity // traceable author statement /// 16564 // transcriptional repressor activity // inferred from direct assay 932.101806640625 3425.34643554688 2661.72045898438 1085.42700195313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR070W /GEN=MOT3 /DB_XREF=GI:6323715 /SEG=NC_001145:+409153,410625 /DEF=DNA-binding protein implicated in heme-dependent repression, repression of a subset of hypoxic genes by Rox1p, repression of several DAN/TIR genes during aerobic growth, and regulation of membrane-related genes /NOTE=Mot3p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: DNA binding [goid GO:0003677] [evidence IPI] [pmid 12145211]; go_function: transcriptional activator activity [goid GO:0016563] [evidence TAS] [pmid 12145211]; go_function: transcriptional repressor activity [goid GO:0016564] [evidence IDA] [pmid 12145211]; go_process: transcription [goid GO:0006350] [evidence IGI,IMP,IPI] [pmid 12145211] --- --- --- --- --- --- S0004674 // MOT3 SGDID:S0004674, Chr XIII from 409153-410625, Verified ORF // sgd // 10 // --- /// GENEFINDER00000022014 // cdna:GeneFinder chromosome:SGD1:XIII:409153:410625:1 // ensembl // 10 // --- /// YMR070W // cdna:known chromosome:SGD1:XIII:409153:410625:1 gene:YMR070W // ensembl // 10 // --- --- No cerevisiae_gene 2.56365860819945 3.67486299365959 -1.34416571813032 2.85561130771481 1.16449404369797 Max fold change at or above threshold 4 3.67486299365959 Max fold change at or above threshold -0.89893666211024 1.14966706374554 0.522224813350536 -0.772955214985838 2026.14892578125 1217.0458334321 0.60066948581424 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770314_at SPBC337.16.S1 --- 3.67477735198651 --- --- --- --- 9.65410041809082 2.62712526321411 12.8559923171997 6.80101299285889 0.274170011281967 0.753906011581421 0.24609400331974 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC337.16 /GEN=cho1 /DEF=phospholipid methyltransferase (PMID 9755189) --- --- --- --- --- --- SPBC337.16 // |cho1||phosphatidyl-N-methylethanolamine N-methyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.38370930168761 -3.67477735198651 1.08914055416851 1.33166134185935 -1.4195091860915 Max fold change at or above threshold 4 3.67477735198651 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773330_at SPAC18G6.04c.S1 --- 3.67447948117101 --- --- --- --- 0.959935009479523 2.99288511276245 2.81679821014404 3.52726149559021 0.780517995357513 0.533936023712158 0.725830018520355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18G6.04c /GEN=shm2 /DEF=serine hydroxymethyltransferase (predicted) --- --- --- --- --- --- SPAC18G6.04c // |shm2||serine hydroxymethyltransferase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.25485809191249 3.11779972936417 1.45138952490454 2.93436345411687 3.67447948117101 Max fold change at or above threshold 3 3.67447948117101 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776896_at YLR146C.S1 Spermine synthase, required for the biosynthesis of spermine and also involved in biosynthesis of pantothenic acid 3.6743678903013 205.302177429199 664.314331054688 SPE4 6597 // spermine biosynthesis // inferred from mutant phenotype /// 15940 // pantothenate biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 16768 // spermine synthase activity // inferred from mutant phenotype 618.481628417969 168.323272705078 242.28108215332 710.147033691406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR146C /GEN=SPE4 /DB_XREF=GI:6323175 /SEG=NC_001144:-432824,433726 /DEF=Spermine Synthase /NOTE=Spe4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: spermine synthase activity [goid GO:0016768] [evidence IMP] [pmid 9573363]; go_process: pantothenate biosynthesis [goid GO:0015940] [evidence IMP] [pmid 11154694]; go_process: spermine biosynthesis [goid GO:0006597] [evidence IMP] [pmid 9573363] --- --- --- --- --- --- S0004136 // SPE4 SGDID:S0004136, Chr XII from 433726-432824, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017933 // cdna:Genscan chromosome:SGD1:XII:432824:433726:-1 // ensembl // 11 // --- /// GENEFINDER00000024880 // cdna:GeneFinder chromosome:SGD1:XII:432824:433639:-1 // ensembl // 11 // --- /// YLR146C // cdna:known chromosome:SGD1:XII:432824:433726:-1 gene:YLR146C // ensembl // 11 // --- --- No cerevisiae_gene -1.03770002437261 -3.6743678903013 1.11825559993222 -2.55274420487598 1.14821039310078 Max fold change at or above threshold 4 3.6743678903013 Max fold change at or above threshold 0.681944667341999 -0.989408578685092 -0.714817152531024 1.02228106387412 434.808254241943 269.337650064668 0.619440057627789 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779989_at SPAC12B10.12c.S1 --- 3.67417664478775 --- --- --- --- 2.53718614578247 0.783554971218109 6.67333459854126 3.95411372184753 0.432372987270355 0.850341975688934 0.030273400247097 0.064453125 A A P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12B10.12c /GEN=rhp41 /DEF=involved in DNA repair (PMID 12807767) --- --- --- --- --- --- SPAC12B10.12c // |rhp41|rhp4a|DNA repair protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.63128006442561 -3.23804485834373 -3.67417664478775 2.63021087736674 1.5584641782868 Max fold change at or above threshold 3 3.67417664478775 Max fold change at or above threshold APAAPM No 4 0 AAPM 2 1 1 No No x = 1
1770437_at YPR015C.S1 Hypothetical protein 3.67334779253293 197.946578979492 160.75114440918 --- --- --- --- 138.462356567383 192.028503417969 203.864654541016 183.039932250977 0.00195312988944352 0.000732421991415322 0.00122069998178631 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR015C /GEN=RPA135 /DB_XREF=GI:6325272 /SEG=NC_001148:-590278,591021 /DEF=Hypothetical ORF /NOTE=Ypr015cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006219 // YPR015C SGDID:S0006219, Chr XVI from 591023-590280, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YPR015C // cdna:known chromosome:SGD1:XVI:590280:591023:-1 gene:YPR015C // ensembl // 11 // --- --- No cerevisiae_gene 3.67334779253293 1.3868643303389 -1.14785609063873 1.47234713892656 1.3219472554759 Max fold change at or above threshold 4 3.67334779253293 Max fold change at or above threshold -1.43156904548725 0.443955347688921 0.85837735594937 0.129236341848959 179.348861694336 28.5606239222901 0.15924619566845 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770644_at SPBC342.03.S1 --- 3.67256527012445 --- --- --- --- 2.25099325180054 1.26237440109253 1.8217191696167 4.20792961120605 0.665526986122131 0.805419981479645 0.398925989866257 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC342.03 /DEF=GAS family --- --- --- --- --- --- SPBC342.03 // |||GPI anchored protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.23817435526602 -1.78314234655931 -3.67256527012445 -1.23564229291947 1.86936571570803 Max fold change at or above threshold 1 3.67256527012445 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774012_at YIR027C.S1 Allantoinase, converts allantoin to allantoate in the first step of allantoin degradation; expression sensitive to nitrogen catabolite repression 3.67084033433502 270.494674682617 409.344299316406 DAL1 256 // allantoin catabolism // inferred from genetic interaction /// 256 // allantoin catabolism // inferred from mutant phenotype /// 256 // allantoin catabolism // inferred from sequence similarity 5622 // intracellular // inferred from curator 4038 // allantoinase activity // inferred from sequence similarity /// 4038 // allantoinase activity // inferred from mutant phenotype 377.980804443359 285.832916259766 255.156433105469 440.707794189453 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR027C /GEN=DAL1 /DB_XREF=GI:6322218 /SEG=NC_001141:-406257,407639 /DEF=Allantoinase, converts allantoin to allantoate in the first step of allantoin degradation; expression sensitive to nitrogen catabolite repression /NOTE=Dal1p; go_component: intracellular [goid GO:0005622] [evidence IC] [pmid 11244074]; go_function: allantoinase activity [goid GO:0004038] [evidence IMP,ISS] [pmid 1803816]; go_process: allantoin catabolism [goid GO:0000256] [evidence IGI,IMP,ISS] [pmid 1803816] --- --- --- --- --- --- S0001466 // DAL1 SGDID:S0001466, Chr IX from 407639-406257, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016496 // cdna:Genscan chromosome:SGD1:IX:406257:407639:-1 // ensembl // 11 // --- /// GENEFINDER00000019014 // cdna:GeneFinder chromosome:SGD1:IX:406257:407639:-1 // ensembl // 11 // --- /// YIR027C // cdna:known chromosome:SGD1:IX:406257:407639:-1 gene:YIR027C // ensembl // 11 // --- --- No cerevisiae_gene -3.67084033433502 -1.32238375268106 1.55965064479732 -1.48136889923963 1.16595284471779 Max fold change at or above threshold 4 3.67084033433502 Max fold change at or above threshold 0.447346183570988 -0.635695835767206 -0.996245826836227 1.18459547903244 339.919486999512 85.0824682129155 0.250301825776284 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769811_at SPAC57A7.07c.S1 --- 3.66962138735031 --- --- --- --- 6.39037799835205 9.41333389282227 1.74142706394196 3.61684274673462 0.129638999700546 0.24609400331974 0.432372987270355 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC57A7.07c /DEF=homocysteine methyltransferase (predicted) --- --- --- --- --- --- SPAC57A7.07c // |||homocysteine methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.28837741578663 1.4730480568207 -1.28060682841546 -3.66962138735031 -1.76683877233022 Max fold change at or above threshold 3 3.66962138735031 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777115_at SPBC2G2.09c.S1 --- 3.66886177825535 --- --- --- --- 1.22586417198181 2.63367962837219 1.40736043453217 0.528452575206757 0.753906011581421 0.753906011581421 0.633789002895355 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G2.09c /DEF=cyclin (predicted) --- --- --- --- --- --- SPBC2G2.09c // |crs1||cyclin |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.66886177825535 2.14842695346452 -1.45772061286022 1.14805576890051 -2.31972409539719 Max fold change at or above threshold 1 3.66886177825535 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777307_at SPBC839.14c.S1 --- 3.66599035383551 --- --- --- --- 4.90644788742065 1.43204629421234 2.01962900161743 1.33836901187897 0.5 0.567627012729645 0.5 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC839.14c /DEF=methyltransferase (predicted) --- --- --- --- --- --- D89168 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0674. // gb // 11 // --- /// SPBC839.14c // |||methyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.16734974816404 -3.42617966140495 -3.6442928424086 -2.42938078404068 -3.66599035383551 Max fold change at or above threshold 1 3.66599035383551 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772311_at SPCC4F11.02.S1 --- 3.66562727361677 --- --- --- --- 2.86940503120422 1.11398422718048 3.6724226474762 1.66190421581268 0.5 0.888427972793579 0.696289002895355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4F11.02 /GEN=ptc1 /DEF=serinethreonine protein phosphatase --- --- --- --- --- --- L26970 // Schizosaccharomyces pombe protein phosphatase 2C (ptc1) mRNA, complete cds. // gb // 11 // --- /// SPCC4F11.02 // |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.93061769736539 -2.57580400259953 -3.66562727361677 1.27985509453678 -1.72657666061763 Max fold change at or above threshold 2 3.66562727361677 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780054_at YFR027W.S1 Acetyltransferase required for the establishment of sister chromatid cohesion during DNA replication, but not for its maintenance during G2 and M phases; also required for postreplicative double-strand break repair; interacts with Chl1p 3.66325699819984 34.2236547470093 99.5050811767578 ECO1 6260 // DNA replication // inferred from mutant phenotype /// 6281 // DNA repair // inferred from direct assay /// 7064 // mitotic sister chromatid cohesion // inferred from mutant phenotype 790 // nuclear chromatin // inferred from physical interaction 16407 // acetyltransferase activity // inferred from direct assay 92.1943969726563 25.167329788208 43.2799797058105 106.815765380859 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR027W /GEN=ECO1 /DB_XREF=GI:14318550 /SEG=NC_001138:+207440,208285 /DEF=Acetyltransferase required for the establishment of sister chromatid cohesion during DNA replication, but not for its maintenance during G2 and M phases; also required for postreplicative double-strand break repair /NOTE=Eco1p; go_component: nuclear chromatin [goid GO:0000790] [evidence IPI] [pmid 9990856]; go_function: acetyltransferase activity [goid GO:0016407] [evidence IDA] [pmid 11864574]; go_process: DNA repair [goid GO:0006281] [evidence IDA] [pmid 11448778]; go_process: DNA replication [goid GO:0006260] [evidence IMP] [pmid 9990856]; go_process: mitotic sister chromatid cohesion [goid GO:0007064] [evidence IMP] [pmid 9990855] --- --- --- --- --- --- S0001923 // ECO1 SGDID:S0001923, Chr VI from 207440-208285, Verified ORF // sgd // 10 // --- /// GENSCAN00000023268 // cdna:Genscan chromosome:SGD1:VI:207440:208285:1 // ensembl // 10 // --- /// YFR027W // cdna:known chromosome:SGD1:VI:207440:208285:1 gene:YFR027W // ensembl // 10 // --- --- No cerevisiae_gene -1.34513982810766 -3.66325699819984 1.06994204948915 -2.13018577178951 1.15859280919793 Max fold change at or above threshold 4 3.66325699819984 Max fold change at or above threshold 0.651662985738245 -1.07273530484875 -0.606753070090293 1.0278253892008 66.8643679618835 38.8698292907909 0.5813235131894 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777654_at YNL271C.S1 Formin, nucleates the formation of linear actin filaments, involved in cell processes such as budding and mitotic spindle orientation which require the formation of polarized actin cables, functionally redundant with BNR1 3.66070764607336 570.057403564453 1065.49188232422 BNI1 132 // establishment of mitotic spindle orientation // inferred from mutant phenotype /// 6970 // response to osmotic stress // traceable author statement /// 7015 // actin filament organization // inferred from physical interaction /// 7117 // budding cell bud growth // traceable author statement /// 7121 // bipolar bud site selection // traceable author statement /// 7266 // Rho protein signal transduction // inferred from physical interaction /// 8298 // intracellular mRNA localization // inferred from mutant phenotype /// 30447 // filamentous growth // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction /// 31384 // regulation of initiation of mating projection growth // inferred from mutant phenotype /// 31385 // regulation of termination of mating projection growth // inferred from mutant phenotype /// 45010 // actin nucleation // inferred from direct assay 131 // incipient bud site // inferred from direct assay /// 133 // polarisome // traceable author statement /// 5884 // actin filament // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 30478 // actin cap // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay 5519 // cytoskeletal regulatory protein binding // inferred from physical interaction 1041.68481445313 581.184753417969 558.930053710938 1089.29895019531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL271C /GEN=BNI1 /DB_XREF=GI:6324058 /SEG=NC_001146:-129521,135382 /DEF=Formin, nucleates the formation of linear actin filaments, involved in cell processes such as budding and mitotic spindle orientation which require the formation of polarized actin cables, functionally redundant with BNR1 /NOTE=Bni1p; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IDA] [pmid 10652251]; go_component: actin filament [goid GO:0005884] [evidence IDA] [pmid 12052901]; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 11154270]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 11154270]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 11154270]; go_component: polarisome [goid GO:0000133] [evidence TAS] [pmid 10639324]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 9082982]; go_function: cytoskeletal regulatory protein binding [goid GO:0005519] [evidence IPI] [pmid 10639324]; go_process: Rho protein signal transduction [goid GO:0007266] [evidence IPI] [pmid 10639324]; go_process: actin filament organization [goid GO:0007015] [evidence IPI] [pmid 10639324]; go_process: actin nucleation [goid GO:0045010] [evidence IDA] [pmid 12052901]; go_process: bud growth [goid GO:0007117] [evidence TAS] [pmid 10652251]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IMP,IPI] [pmid 10639324]; go_process: mRNA localization, intracellular [goid GO:0008298] [evidence IMP] [pmid 11553699]; go_process: mitotic spindle orientation (sensu Fungi) [goid GO:0030607] [evidence IMP] [pmid 10085293]; go_process: polar budding [goid GO:0007121] [evidence TAS] [pmid 10652251]; go_process: response to osmotic stress [goid GO:0006970] [evidence TAS] [pmid 10652251] --- --- --- --- scop // a.2.7.Seryl-tRNA synthetase (SerRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) // 0.140000000596046 /// scop // a.2.7.Seryl-tRNA synthetase (SerRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) // 3.59999990463257 /// scop // a.2.7.Seryl-tRNA synthetase (SerRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) // 7.30000019073486 --- S0005215 // BNI1 SGDID:S0005215, Chr XIV from 135382-129521, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019825 // cdna:Genscan chromosome:SGD1:XIV:129521:133627:-1 // ensembl // 11 // --- /// GENEFINDER00000020704 // cdna:GeneFinder chromosome:SGD1:XIV:129521:134860:-1 // ensembl // 11 // --- /// YNL271C // cdna:known chromosome:SGD1:XIV:129521:135382:-1 gene:YNL271C // ensembl // 11 // --- --- No cerevisiae_gene -3.66070764607336 -1.79234711221679 1.07733619172103 -1.86371229733847 1.04570877397995 Max fold change at or above threshold 4 3.66070764607336 Max fold change at or above threshold 0.780602162284496 -0.824806564590046 -0.902391546974907 0.946595949280457 817.774642944336 286.842878904534 0.350760299771313 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771893_at YNL251C.S1 RNA-binding protein that interacts with the C-terminal domain of the RNA polymerase II large subunit (Rpo21p), required for transcription termination and 3' end maturation of nonpolyadenylated RNAs 3.66070645052245 818.100769042969 546.418838500977 NRD1 30847 // transcription termination from Pol II promoter, RNA polymerase(A)-independent // inferred from genetic interaction /// 30847 // transcription termination from Pol II promoter, RNA polymerase(A)-independent // inferred from mutant phenotype /// 30847 // transcription termination from Pol II promoter, RNA polymerase(A)-independent // inferred from physical interaction 5634 // nucleus // inferred from physical interaction 3723 // RNA binding // inferred from direct assay 504.742095947266 718.173217773438 918.0283203125 588.095581054688 0.00195312988944352 0.00585938012227416 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL251C /GEN=NRD1 /DB_XREF=GI:6324078 /SEG=NC_001146:-172587,174314 /DEF=RNA-binding protein that interacts with the C-terminal domain of the RNA polymerase II large subunit (Rpo21p), required for transcription termination and 3' end maturation of nonpolyadenylated RNAs /NOTE=Nrd1p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 10655211]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 9618475]; go_process: transcription termination from Pol II promoter, poly(A)-independent [goid GO:0030847] [evidence IGI,IMP,IPI] [pmid 10655211] --- --- --- --- --- --- S0005195 // NRD1 SGDID:S0005195, Chr XIV from 174314-172587, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019839 // cdna:Genscan chromosome:SGD1:XIV:172587:174314:-1 // ensembl // 11 // --- /// GENEFINDER00000020606 // cdna:GeneFinder chromosome:SGD1:XIV:172587:174314:-1 // ensembl // 11 // --- /// YNL251C // cdna:known chromosome:SGD1:XIV:172587:174314:-1 gene:YNL251C // ensembl // 11 // --- --- No cerevisiae_gene 3.66070645052245 1.42285183569961 1.0744465832444 1.81880672859197 1.16514074371187 Max fold change at or above threshold 4 3.66070645052245 Max fold change at or above threshold -0.985925496419445 0.199461512664841 1.30944791118998 -0.522983927435374 682.259803771973 180.051848206982 0.263905109478147 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1773347_at SPAPB1A10.07c.S1 --- 3.6600800866491 --- --- --- --- 1.07684326171875 0.429299652576447 3.94133257865906 0.714162409305573 0.725830018520355 0.932372987270355 0.398925989866257 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1A10.07c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAPB1A10.07c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.1039328628918 -2.50837207823501 -1.34913786730195 3.6600800866491 -1.50784086040854 Max fold change at or above threshold 1 3.6600800866491 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772834_at SPAC3A11.10c.S1 --- 3.65892015584748 --- --- --- --- 1.58899331092834 1.89800930023193 1.34651529788971 5.81399965286255 0.828612983226776 0.466064006090164 0.870360970497131 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A11.10c /DEF=microsomal dipeptidase (predicted) --- --- --- --- --- --- SPAC3A11.10c // |||membrane dipeptidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.41638637236277 1.19447280688869 -1.49904953132217 -1.18007817172122 3.65892015584748 Max fold change at or above threshold 1 3.65892015584748 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775686_at SPBC29A10.05.S1 --- 3.65850564878754 --- --- --- --- 1.2018963098526 2.39781808853149 1.61106431484222 1.38259863853455 0.633789002895355 0.932372987270355 0.780517995357513 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A10.05 /GEN=exo1 /DEF=exonuclease --- --- --- --- --- --- SPBC29A10.05 // |exo1||exonuclease i|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.65850564878754 1.99502907936007 1.22683854783418 1.34043536171586 1.15034768573681 Max fold change at or above threshold 0 3.65850564878754 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772096_at SPBC409.05.S1 --- 3.65778740271964 --- --- --- --- 1.05931425094604 0.942531883716583 3.87474632263184 0.297166615724564 0.885009765625 0.919434010982513 0.533936023712158 0.916015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC409.05 /GEN=skp1 /DEF=SCF ubiquitin ligase complex (PMID 9990507) --- --- --- --- --- --- SPBC409.05 // |skp1|psh1, sph1|SCF ubiquitin ligase complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.08489823825552 -1.12390282943954 -2.29489012677241 3.65778740271964 -3.56471485992187 Max fold change at or above threshold 1 3.65778740271964 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771247_at SPCC126.01c.S1 --- 3.6573660985844 --- --- --- --- 2.61613607406616 7.57836151123047 2.85808563232422 8.68220233917236 0.696289002895355 0.455810546875 0.601073980331421 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC126.01c /DEF=WD repeat protein --- --- --- --- --- --- SPCC126.01c // ||SPCC576.18c|WD repeat protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.6573660985844 2.89677650423271 1.29493742293493 1.09248355261659 3.31871205983485 Max fold change at or above threshold 4 3.6573660985844 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777553_s_at YFL065C.S1 Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// similar to other subtelomerically-encoded proteins /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein 3.65673671381438 133.488048553467 47.4478588104248 YRF1-5 /// YRF1-7 /// YRF1-6 /// YRF1-3 /// YRF1-2 /// YRF1-1 722 // telomerase-independent telomere maintenance // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay /// 5634 // nucleus // inferred from curator 4386 // helicase activity // inferred from sequence similarity /// 3678 // DNA helicase activity // inferred from direct assay 44.4581451416016 104.404365539551 162.571731567383 50.437572479248 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL065C /DB_XREF=GI:14318454 /SEG=NC_001138:-3030,3338 /DEF=Hypothetical ORF /NOTE=Yfl065cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 0.239999994635582 /// scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 2.40000009536743 /// scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 5.0 --- S0002151 // YBL111C SGDID:S0002151, Chr II from 5009-4216,4116-2907, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0002953 // YRF1-1 SGDID:S0002953, Chr IV from 1526304-1531694, Verified ORF // sgd // 11 // --- /// S0000992 // YRF1-2 SGDID:S0000992, Chr V from 571475-576520, Verified ORF // sgd // 11 // --- /// S0001829 // YFL065C SGDID:S0001829, Chr VI from 3338-3030, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0003528 // YRF1-3 SGDID:S0003528, Chr VII from 1084870-1084888,1085037-1090597, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0001041 // YHL049C SGDID:S0001041, Chr VIII from 4540-3725, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0001261 // YHR218W SGDID:S0001261, Chr VIII from 558013-558614,558714-559923, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0001439 // YIL177C SGDID:S0001439, Chr IX from 6147-4987,4598-483, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0003760 // YJL225C SGDID:S0003760, Chr X from 6130-4970,4581-466, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0003989 // YLL066C SGDID:S0003989, Chr XII from 9836-9550,9450-6120, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0003990 // YLL067C SGDID:S0003990, Chr XII from 4301-4015,3915-585, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0004459 // YRF1-5 SGDID:S0004459, Chr XII from 1072505-1077895, Verified ORF // sgd // 11 // --- /// S0004602 // YML133C SGDID:S0004602, Chr XIII from 4684-3891,3791-461, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0005283 // YRF1-6 SGDID:S0005283, Chr XIV from 6098-6080,5931-371, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0006204 // YRF1-7 SGDID:S0006204, Chr XVI from 6007-5989,5840-280, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0006407 // YPR203W SGDID:S0006407, Chr XVI from 943876-944184, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021053 // cdna:Genscan chromosome:SGD1:II:4194:5009:-1 // ensembl // 11 // --- /// GENSCAN00000025522 // cdna:Genscan chromosome:SGD1:IV:1526304:1531694:1 // ensembl // 11 // --- /// GENEFINDER00000023783 // cdna:GeneFinder chromosome:SGD1:IV:1526496:1531694:1 // ensembl // 11 // --- /// GENSCAN00000016342 // cdna:Genscan chromosome:SGD1:IX:4966:6147:-1 // ensembl // 11 // --- /// GENSCAN00000016965 // cdna:Genscan chromosome:SGD1:V:571475:576520:1 // ensembl // 11 // --- /// GENEFINDER00000019661 // cdna:GeneFinder chromosome:SGD1:V:571640:576520:1 // ensembl // 11 // --- /// GENSCAN00000019569 // cdna:Genscan chromosome:SGD1:VII:1085210:1090597:1 // ensembl // 11 // --- /// GENEFINDER00000021702 // cdna:GeneFinder chromosome:SGD1:VII:1085402:1090597:1 // ensembl // 11 // --- /// GENEFINDER00000020212 // cdna:GeneFinder chromosome:SGD1:VIII:445:4348:-1 // ensembl // 11 // --- /// GENSCAN00000016512 // cdna:Genscan chromosome:SGD1:VIII:3725:4540:-1 // ensembl // 11 // --- /// GENSCAN00000016741 // cdna:Genscan chromosome:SGD1:VIII:558013:558636:1 // ensembl // 11 // --- /// GENSCAN00000023969 // cdna:Genscan chromosome:SGD1:X:4949:6130:-1 // ensembl // 11 // --- /// GENEFINDER00000024818 // cdna:GeneFinder chromosome:SGD1:XII:455:4616:-1 // ensembl // 11 // --- /// GENSCAN00000017636 // cdna:Genscan chromosome:SGD1:XII:3993:4808:-1 // ensembl // 11 // --- /// GENSCAN00000017640 // cdna:Genscan chromosome:SGD1:XII:9528:10343:-1 // ensembl // 11 // --- /// GENSCAN00000018172 // cdna:Genscan chromosome:SGD1:XII:1072505:1077895:1 // ensembl // 11 // --- /// GENEFINDER00000024799 // cdna:GeneFinder chromosome:SGD1:XII:1072697:1077895:1 // ensembl // 11 // --- /// GENSCAN00000018603 // cdna:Genscan chromosome:SGD1:XIII:3869:4684:-1 // ensembl // 11 // --- /// GENSCAN00000019774 // cdna:Genscan chromosome:SGD1:XIV:371:5758:-1 // ensembl // 11 // --- /// GENEFINDER00000020706 // cdna:GeneFinder chromosome:SGD1:XIV:371:5566:-1 // ensembl // 11 // --- /// GENSCAN00000017839 // cdna:Genscan chromosome:SGD1:XV:1085469:1090859:1 // ensembl // 11 // --- /// GENEFINDER00000022814 // cdna:GeneFinder chromosome:SGD1:XV:1085661:1090859:1 // ensembl // 11 // --- /// GENSCAN00000016966 // cdna:Genscan chromosome:SGD1:XVI:280:5667:-1 // ensembl // 11 // --- /// GENEFINDER00000020788 // cdna:GeneFinder chromosome:SGD1:XVI:280:5475:-1 // ensembl // 11 // --- /// YBL111C // cdna:known chromosome:SGD1:II:2907:5009:-1 gene:YBL111C // ensembl // 11 // --- /// YDR545W // cdna:known chromosome:SGD1:IV:1526304:1531694:1 gene:YDR545W // ensembl // 11 // --- /// YIL177C // cdna:known chromosome:SGD1:IX:483:6147:-1 gene:YIL177C // ensembl // 11 // --- /// YER190W // cdna:known chromosome:SGD1:V:571475:576520:1 gene:YER190W // ensembl // 11 // --- /// YFL065C // cdna:known chromosome:SGD1:VI:3030:3338:-1 gene:YFL065C // ensembl // 11 // --- /// YGR296W // cdna:known chromosome:SGD1:VII:1084870:1090597:1 gene:YGR296W // ensembl // 11 // --- /// YHL049C // cdna:known chromosome:SGD1:VIII:3725:4540:-1 gene:YHL049C // ensembl // 11 // --- /// YHR218W // cdna:known chromosome:SGD1:VIII:558013:559923:1 gene:YHR218W // ensembl // 11 // --- /// YJL225C // cdna:known chromosome:SGD1:X:466:6130:-1 gene:YJL225C // ensembl // 11 // --- /// YLL067C // cdna:known chromosome:SGD1:XII:585:4301:-1 gene:YLL067C // ensembl // 11 // --- /// YLL066C // cdna:known chromosome:SGD1:XII:6120:9836:-1 gene:YLL066C // ensembl // 11 // --- /// YLR467W // cdna:known chromosome:SGD1:XII:1072505:1077895:1 gene:YLR467W // ensembl // 11 // --- /// YML133C // cdna:known chromosome:SGD1:XIII:461:4684:-1 gene:YML133C // ensembl // 11 // --- /// YNL339C // cdna:known chromosome:SGD1:XIV:371:6098:-1 gene:YNL339C // ensembl // 11 // --- /// YPL283C // cdna:known chromosome:SGD1:XVI:280:6007:-1 gene:YPL283C // ensembl // 11 // --- /// YPR203W // cdna:known chromosome:SGD1:XVI:943876:944184:1 gene:YPR203W // ensembl // 11 // --- --- No cerevisiae_gene 2.45230125250162 2.3483743014248 1.48109784119969 3.65673671381438 1.13449565470178 Max fold change at or above threshold 4 3.65673671381438 Max fold change at or above threshold -0.834818357488607 0.252867221693583 1.30827663345442 -0.726325497659394 90.4679536819458 55.1135562935583 0.609205293703432 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770182_at YHR157W.S1 Protein involved in early stages of meiotic recombination; required for meiotic crossing over; forms a complex with Rec102p and Spo11p necessary during the initiation of recombination 3.6565015389142 39.8843879699707 74.8525543212891 REC104 7131 // meiotic recombination // inferred from mutant phenotype /// 42138 // meiotic DNA double-strand break formation // traceable author statement 5634 // nucleus // inferred from curator --- 78.173210144043 40.272762298584 39.4960136413574 71.5318984985352 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR157W /GEN=REC104 /DB_XREF=GI:6321951 /SEG=NC_001140:+412908,413456 /DEF=meiosis-specific recombination gene, dispensable for mitotic recombination and axial elements in meiosis, required for tripartite synaptonemal complexes, meiotic recombination and spore viability; classified as an early recombination gene /NOTE=Rec104p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 9334324]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiotic DNA double-strand break formation [goid GO:0042138] [evidence TAS] [pmid 9334324]; go_process: meiotic recombination [goid GO:0007131] [evidence IMP] [pmid 9177999] --- --- --- --- --- --- S0001200 // REC104 SGDID:S0001200, Chr VIII from 412909-413457, Verified ORF // sgd // 11 // --- /// GENSCAN00000016684 // cdna:Genscan chromosome:SGD1:VIII:412909:413457:1 // ensembl // 11 // --- /// YHR157W // cdna:known chromosome:SGD1:VIII:412909:413457:1 gene:YHR157W // ensembl // 11 // --- --- No cerevisiae_gene -3.6565015389142 -1.94109382327598 -1.25486184120809 -1.97926835993862 -1.09284405677621 Max fold change at or above threshold 4 3.6565015389142 Max fold change at or above threshold 1.02121204311656 -0.839152260528199 -0.877279395086093 0.695219612497737 57.3684711456299 20.3725946424611 0.35511831212558 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776543_at SPAC869.10c.S1 --- 3.65461724711631 --- --- --- --- 10.3429403305054 4.84754133224487 10.61754322052 4.5636887550354 0.064453125 0.24609400331974 0.149657994508743 0.0375977009534836 M A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC869.10c /DEF=amino acid transporter (predicted) --- --- --- --- --- --- SPAC869.10c // |||amino acid transporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.22283443978616 -2.13364665128407 -3.65461724711631 1.02654978963813 -2.26635532913882 Max fold change at or above threshold 4 3.65461724711631 Max fold change at or above threshold MAAAAP No 4 0 MAAP 2 1 1 No No x = 1
1780077_at YBR041W.S1 Fatty acid transporter and very long-chain fatty acyl-CoA synthetase, may form a complex with Faa1p or Faa4p that imports and activates exogenous fatty acids 3.65396490976055 162.144523620605 606.914947509766 FAT1 38 // very-long-chain fatty acid metabolism // inferred from mutant phenotype /// 6869 // lipid transport // inferred from mutant phenotype /// 6869 // lipid transport // inferred from sequence similarity 5777 // peroxisome // inferred from direct assay /// 5792 // microsome // inferred from direct assay /// 5811 // lipid particle // inferred from direct assay /// 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from mutant phenotype 4467 // long-chain-fatty-acid-CoA ligase activity // inferred from mutant phenotype /// 4467 // long-chain-fatty-acid-CoA ligase activity // inferred from sequence similarity /// 5324 // long-chain fatty acid transporter activity // inferred from mutant phenotype /// 5324 // long-chain fatty acid transporter activity // inferred from sequence similarity 558.913452148438 152.960815429688 171.328231811523 654.916442871094 0.000244141003349796 0.00195312988944352 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR041W /GEN=FAT1 /DB_XREF=GI:41629676 /SEG=NC_001134:+318228,320237 /DEF=Fatty acid transporter and very long-chain fatty acyl-CoA synthetase, may form a complex with Faa1p or Faa4p that imports and activates exogenous fatty acids /NOTE=Fat1p; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 10515935]; go_component: microsome [goid GO:0005792] [evidence IDA] [pmid 9660783]; go_component: peroxisome [goid GO:0005777] [evidence IDA] [pmid 9660783]; go_component: plasma membrane [goid GO:0005886] [evidence IMP,ISS] [pmid 9079682]; go_function: long-chain fatty acid transporter activity [goid GO:0005324] [evidence IMP,ISS] [pmid 9079682]; go_function: long-chain-fatty-acid-CoA ligase activity [goid GO:0004467] [evidence IMP,ISS] [pmid 9660783]; go_process: lipid transport [goid GO:0006869] [evidence IMP,ISS] [pmid 9079682]; go_process: very-long-chain fatty acid metabolism [goid GO:0000038] [evidence IMP] [pmid 9988704] --- --- --- ec // AC2L_HUMAN // (Q9NUB1) Acetyl-coenzyme A synthetase 2-like, mitochondrial precursor (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acetyl-CoA synthetase 2) // 1.0E-162 --- S0000245 // span:7-29,54-71,149-171 // numtm:3 S0000245 // FAT1 SGDID:S0000245, Chr II from 318266-320275, Verified ORF // sgd // 11 // --- /// GENSCAN00000021172 // cdna:Genscan chromosome:SGD1:II:318566:320275:1 // ensembl // 11 // --- /// GENEFINDER00000022312 // cdna:GeneFinder chromosome:SGD1:II:319124:320275:1 // ensembl // 11 // --- /// YBR041W // cdna:known chromosome:SGD1:II:318266:320275:1 gene:YBR041W // ensembl // 11 // --- --- No cerevisiae_gene -2.00664760068641 -3.65396490976055 -1.01045306778798 -3.26223790579531 1.17176718569508 Max fold change at or above threshold 4 3.65396490976055 Max fold change at or above threshold 0.671041382412832 -0.891094256598126 -0.820415085849204 1.0404679600345 384.529735565186 259.87028692065 0.675813241175457 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778675_at SPAC458.07.S1 --- 3.6531514474306 --- --- --- --- 0.84526526927948 2.64015245437622 1.83434069156647 3.08788204193115 0.850341975688934 0.334473013877869 0.398925989866257 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC458.07 /GEN=tfa1 /DEF=transcription initiation factor activity --- --- --- --- --- --- AJ310560 // Schizosaccharomyces pombe mRNA for TFIIE large (alpha) subunit (tfa1+ gene). // gb // 11 // --- /// AB176672 // Schizosaccharomyces pombe spTFIIEalpha mRNA for general transcription factor spTFIIE alpha subunit, complete cds. // gb // 11 // --- /// SPAC458.07 // |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.24524559208885 3.12346023234426 -1.63490925809635 2.17013611967057 3.6531514474306 Max fold change at or above threshold 2 3.6531514474306 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770205_at YIR026C.S1 nitrogen starvation-induced protein phosphatase 3.65219345333688 104.830509185791 174.51749420166 YVH1 5977 // glycogen metabolism // inferred from mutant phenotype /// 7126 // meiosis // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4725 // protein tyrosine phosphatase activity // inferred from direct assay /// 8138 // protein tyrosine/serine/threonine phosphatase activity // inferred from sequence similarity 150.881225585938 90.1999053955078 119.461112976074 198.153762817383 0.00195312988944352 0.00122069998178631 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR026C /GEN=YVH1 /DB_XREF=GI:6322217 /SEG=NC_001141:-404870,405964 /DEF=nitrogen starvation-induced protein phosphatase /NOTE=Yvh1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein tyrosine phosphatase activity [goid GO:0004725] [evidence IDA] [pmid 1334559]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 8896280]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 8896280] --- --- --- --- --- --- S0001465 // YVH1 SGDID:S0001465, Chr IX from 405964-404870, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016495 // cdna:Genscan chromosome:SGD1:IX:404870:405964:-1 // ensembl // 11 // --- /// GENEFINDER00000019011 // cdna:GeneFinder chromosome:SGD1:IX:404870:405964:-1 // ensembl // 11 // --- /// YIR026C // cdna:known chromosome:SGD1:IX:404870:405964:-1 gene:YIR026C // ensembl // 11 // --- --- No cerevisiae_gene 3.65219345333688 -1.67274261457764 1.08835513450845 -1.26301540164083 1.31330960527306 Max fold change at or above threshold 4 3.65219345333688 Max fold change at or above threshold 0.242610700182786 -1.0710007455247 -0.437562694532579 1.26595273987449 139.674001693726 46.1942687761431 0.330729185216853 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776445_at SPAC23H4.05c.S1 --- 3.65134046491854 --- --- --- --- 8.26872825622559 24.7128162384033 2.26457333564758 4.78501558303833 0.398925989866257 0.129638999700546 0.633789002895355 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H4.05c /DEF=dubious --- --- --- --- --- --- SPAC23H4.05c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.51888698964056 2.98870823573103 1.99912253082041 -3.65134046491854 -1.7280462545485 Max fold change at or above threshold 3 3.65134046491854 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776029_at YCR044C.S1 Vacuolar membrane protein that seems to be involved in Mn2+ homeostasis; mutant is dependent on activation of the unfolded protein response pathway for viability 3.65120518029741 405.177703857422 1297.97583007813 PER1 6986 // response to unfolded protein // inferred from mutant phenotype /// 30026 // manganese ion homeostasis // inferred from mutant phenotype 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay --- 1173.76831054688 321.474212646484 488.881195068359 1422.18334960938 0.000244141003349796 0.00292969006113708 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR044C /GEN=PER1 /DB_XREF=GI:6319892 /SEG=NC_001135:-206872,207945 /DEF=Protein Processing in the ER /NOTE=Per1p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 9560393]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: manganese ion homeostasis [goid GO:0030026] [evidence IMP] [pmid 9560393]; go_process: response to unfolded protein [goid GO:0006986] [evidence IMP] [pmid 10893258] --- --- --- --- --- S0000640 // span:155-177,187-204,211-233,248-270,291-313,323-345 // numtm:6 S0000640 // PER1 SGDID:S0000640, Chr III from 207945-206872, reverse complement, Verified ORF // sgd // 11 // --- /// YCR044C // cdna:known chromosome:SGD1:III:206872:207945:-1 gene:YCR044C // ensembl // 11 // --- --- No cerevisiae_gene -1.43361057777033 -3.65120518029741 -1.02959784210308 -2.40092751037959 1.21163890422869 Max fold change at or above threshold 4 3.65120518029741 Max fold change at or above threshold 0.608177083435104 -1.00063527995566 -0.684633533960078 1.07709173048063 851.576766967773 529.766004597379 0.622100114924139 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778740_at SPAC4G9.15.S1 --- 3.64960135813298 --- --- --- --- 3.44890141487122 12.5871152877808 4.06676530838013 11.9506692886353 0.633789002895355 0.432372987270355 0.805419981479645 0.325927734375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G9.15 /DEF=ketoreductase activity (predicted) --- --- --- --- --- --- SPAC4G9.15 // |||ketoreductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.36149734742244 3.64960135813298 -1.46180730152776 1.17914802981748 3.4650654950894 Max fold change at or above threshold 4 3.64960135813298 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773507_at YOR214C.S1 Hypothetical protein 3.64687814823136 23.6290130615234 68.9065971374512 --- --- 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 68.175422668457 28.5638389587402 18.6941871643066 69.6377716064453 0.000244141003349796 0.00415039015933871 0.014160200022161 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR214C /GEN=SAS5 /DB_XREF=GI:6324788 /SEG=NC_001147:-745593,746303 /DEF=Hypothetical ORF /NOTE=Yor214cp; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005740 // YOR214C SGDID:S0005740, Chr XV from 746303-745593, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017629 // cdna:Genscan chromosome:SGD1:XV:745593:746261:-1 // ensembl // 11 // --- /// GENEFINDER00000022896 // cdna:GeneFinder chromosome:SGD1:XV:745593:746303:-1 // ensembl // 11 // --- /// YOR214C // cdna:known chromosome:SGD1:XV:745593:746303:-1 gene:YOR214C // ensembl // 11 // --- --- No cerevisiae_gene -2.65920783726136 -2.38677380750307 -1.12128604674815 -3.64687814823136 1.02144979643324 Max fold change at or above threshold 4 3.64687814823136 Max fold change at or above threshold 0.82806286835171 -0.66917349353739 -1.0422260241835 0.883336649369177 46.2678050994873 26.456466539283 0.571811575725173 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1770363_at YPR048W.S1 Protein with a potential role in DNA replication; displays synthetic lethal genetic interaction with the pol3-13 allele of POL3, which encodes DNA polymerase delta 3.6454284491262 107.717784881592 385.921356201172 TAH18 --- --- --- 355.469573974609 117.924514770508 97.5110549926758 416.373138427734 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR048W /GEN=TAH18 /DB_XREF=GI:6325305 /SEG=NC_001148:+659177,661048 /DEF=Product of gene unknown /NOTE=Tah18p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006252 // TAH18 SGDID:S0006252, Chr XVI from 659179-661050, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020798 // cdna:GeneFinder chromosome:SGD1:XVI:659179:661050:1 // ensembl // 11 // --- /// GENSCAN00000017222 // cdna:Genscan chromosome:SGD1:XVI:659485:661050:1 // ensembl // 11 // --- /// YPR048W // cdna:known chromosome:SGD1:XVI:659179:661050:1 gene:YPR048W // ensembl // 11 // --- --- No cerevisiae_gene 1.03193648160328 -3.01438233319329 -1.26546719891201 -3.6454284491262 1.17133270724733 Max fold change at or above threshold 4 3.6454284491262 Max fold change at or above threshold 0.6675987799274 -0.791994286720783 -0.917424571222826 1.04182007801621 246.819570541382 162.747456556231 0.659378250271062 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779242_at YLR425W.S1 Guanine nucleotide exchange factor (GEF) that functions to modulate Rhop1 activity as part of the cell integrity signaling pathway; multicopy suppressor of tor2 mutation and ypk1 ypk2 double mutation; potential Cdc28p substrate 3.64495940150456 432.097381591797 831.805999755859 TUS1 7047 // cell wall organization and biogenesis // inferred from genetic interaction /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 7165 // signal transduction // inferred from genetic interaction /// 7165 // signal transduction // inferred from mutant phenotype --- 5089 // Rho guanyl-nucleotide exchange factor activity // inferred from direct assay 820.363586425781 384.676727294922 479.518035888672 843.248413085938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR425W /GEN=TUS1 /DB_XREF=GI:6323457 /SEG=NC_001144:+982890,986813 /DEF=Guanine nucleotide exchange factor (GEF) that functions to modulate Rhop1 activity as part of the cell integrity signaling pathway; multicopy suppressor of tor2 mutation and ypk1 ypk2 double mutation; potential Cdc28p substrate /NOTE=Tus1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: Rho guanyl-nucleotide exchange factor activity [goid GO:0005089] [evidence IDA] [pmid 11839800]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IGI,IMP] [pmid 11839800]; go_process: signal transduction [goid GO:0007165] [evidence IGI,IMP] [pmid 11839800] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 0.589999973773956 --- S0004417 // TUS1 SGDID:S0004417, Chr XII from 982890-986813, Verified ORF // sgd // 11 // --- /// GENSCAN00000018142 // cdna:Genscan chromosome:SGD1:XII:982890:986813:1 // ensembl // 11 // --- /// GENEFINDER00000024793 // cdna:GeneFinder chromosome:SGD1:XII:984342:986813:1 // ensembl // 11 // --- /// YLR425W // cdna:known chromosome:SGD1:XII:982890:986813:1 gene:YLR425W // ensembl // 11 // --- --- No cerevisiae_gene -3.64495940150456 -2.13260519344293 1.24921595284579 -1.71080861412321 1.0278959561819 Max fold change at or above threshold 4 3.64495940150456 Max fold change at or above threshold 0.804546806852598 -1.05590085704039 -0.65091436888744 0.902268419075233 631.951690673828 234.183883581645 0.370572445706954 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778834_at YLL056C.S1 Protein of unknown function, transcription is activated by paralogous transcription factors Yrm1p and Yrr1p along with genes involved in multidrug resistance 3.6425951316875 2457.80847167969 775.05078125 --- --- --- --- 696.483276367188 2537.00659179688 2378.6103515625 853.618286132813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL056C /GEN=JLP1 /DB_XREF=GI:6322972 /SEG=NC_001144:-27409,28305 /DEF=Protein of unknown function, transcription is activated by paralogous transcription factors Yrm1p and Yrr1p along with genes involved in multidrug resistance /NOTE=Yll056cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003979 // YLL056C SGDID:S0003979, Chr XII from 28305-27409, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017658 // cdna:Genscan chromosome:SGD1:XII:27409:28020:-1 // ensembl // 11 // --- /// GENEFINDER00000024903 // cdna:GeneFinder chromosome:SGD1:XII:27409:28020:-1 // ensembl // 11 // --- /// YLL056C // cdna:known chromosome:SGD1:XII:27409:28305:-1 gene:YLL056C // ensembl // 11 // --- --- No cerevisiae_gene -1.22247422651697 3.6425951316875 1.33059739122555 3.41517224070215 1.22561203563312 Max fold change at or above threshold 4 3.6425951316875 Max fold change at or above threshold -0.942760029362833 0.943406283176235 0.781081986679522 -0.781728240492924 1616.42962646484 975.80118104859 0.603676872207968 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780170_at SPAC1399.03.S1 --- 3.63770623243657 --- --- --- --- 6.89911842346191 6.66254329681396 8.68406200408936 4.13916301727295 0.219482004642487 0.366210997104645 0.194580003619194 0.125244140625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1399.03 /GEN=fur4 /DEF=uracil permease --- --- --- --- --- --- SPAC1399.03 // |fur4||uracil permease|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.63770623243657 -1.0355082310326 1.16505207865363 1.25872053080831 -1.66679070011776 Max fold change at or above threshold 4 3.63770623243657 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777477_at YCR034W.S1 Fatty acid elongase, involved in sphingolipid biosynthesis; acts on fatty acids of up to 24 carbons in length; mutations have regulatory effects on 1,3-beta-glucan synthase, vacuolar ATPase, and the secretory pathway 3.63690478449529 278.749893188477 521.471328735352 FEN1 16192 // vesicle-mediated transport // inferred from mutant phenotype /// 30148 // sphingolipid biosynthesis // inferred from mutant phenotype /// 30497 // fatty acid elongation // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // traceable author statement 9922 // fatty acid elongase activity // inferred from mutant phenotype /// 9922 // fatty acid elongase activity // traceable author statement 490.505889892578 248.066802978516 309.432983398438 552.436767578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR034W /GEN=FEN1 /DB_XREF=GI:6319882 /SEG=NC_001135:+190587,191630 /DEF=Fatty acid elongase, involved in sphingolipid biosynthesis; acts on fatty acids of up to 24 carbons in length; mutations have regulatory effects on 1,3-beta-glucan synthase, vacuolar ATPase, and the secretory pathway /NOTE=Fen1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 12087109]; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence TAS] [pmid 9988704]; go_function: fatty acid elongase activity [goid GO:0009922] [evidence IMP,TAS] [pmid 12684876]; go_process: fatty acid elongation [goid GO:0030497] [evidence IMP] [pmid 9211877]; go_process: sphingolipid biosynthesis [goid GO:0030148] [evidence IMP] [pmid 9211877]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IMP] [pmid 9832547] --- --- --- --- --- S0000630 // span:68-90,97-119,123-142,147-169,197-219,232-254,274-296 // numtm:7 S0000630 // FEN1 SGDID:S0000630, Chr III from 190587-191630, Verified ORF // sgd // 11 // --- /// YCR034W // cdna:known chromosome:SGD1:III:190587:191630:1 gene:YCR034W // ensembl // 11 // --- --- No cerevisiae_gene 3.63690478449529 -1.97731370744944 -1.14612090529942 -1.5851764879925 1.12625919272674 Max fold change at or above threshold 4 3.63690478449529 Max fold change at or above threshold 0.625205847271153 -1.05158896478992 -0.627158670674008 1.05354178819278 400.110610961914 144.584826461899 0.36136213962009 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779743_at SPAC23D3.09.S1 --- 3.63634748754952 --- --- --- --- 2.70044136047363 0.764253914356232 9.81974315643311 4.83723402023315 0.5 0.601073980331421 0.111571997404099 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23D3.09 /DEF=actin-like protein --- --- --- --- --- --- SPAC23D3.09 // |||actin-like protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.31420304031661 -3.53343477834634 1.09291251503557 3.63634748754952 1.79127534151852 Max fold change at or above threshold 3 3.63634748754952 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769638_at YNL095C.S1 Hypothetical protein 3.63338331743128 105.347030639648 371.393173217773 --- --- 16021 // integral to membrane // inferred from sequence similarity --- 339.111267089844 93.3320922851563 117.361968994141 403.675079345703 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL095C /GEN=RPS7B /DB_XREF=GI:6324234 /SEG=NC_001146:-444912,446840 /DEF=Hypothetical ORF /NOTE=Ynl095cp; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 8771715]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005039 // span:20-38,43-65,72-94,143-165,463-485,500-522,535-557,577-599,612-634 // numtm:9 S0005039 // YNL095C SGDID:S0005039, Chr XIV from 446840-444912, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019957 // cdna:Genscan chromosome:SGD1:XIV:444912:446744:-1 // ensembl // 11 // --- /// GENEFINDER00000020632 // cdna:GeneFinder chromosome:SGD1:XIV:444912:446744:-1 // ensembl // 11 // --- /// YNL095C // cdna:known chromosome:SGD1:XIV:444912:446840:-1 gene:YNL095C // ensembl // 11 // --- --- No cerevisiae_gene 1.14099966540671 -3.63338331743128 -1.13400428598997 -2.88944766346562 1.19039123297178 Max fold change at or above threshold 4 3.63338331743128 Max fold change at or above threshold 0.64513411953718 -0.928805702228663 -0.774921306227864 1.05859288891935 238.370101928711 156.155382439553 0.655096344617306 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774484_at SPBC405.03c.S1 --- 3.63198291095166 --- --- --- --- 4.32858467102051 7.65262317657471 8.18598747253418 6.04248571395874 0.390625 0.0952147990465164 0.0805663987994194 0.0239257998764515 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC405.03c /DEF=hypothetical protein --- --- --- --- --- --- SPBC405.03c // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.21810557740397 1.76792733842273 -3.63198291095166 1.89114643577118 1.39594952465933 Max fold change at or above threshold 4 3.63198291095166 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1770987_at YLR268W.S1 R-SNARE protein; assembles into SNARE complex with Bet1p, Bos1p and Sed5p; cycles between the ER and Golgi complex; involved in anterograde and retrograde transport between the ER and Golgi; synaptobrevin homolog 3.6312224673135 316.352447509766 1123.19366455078 SEC22 6888 // ER to Golgi transport // traceable author statement /// 6890 // retrograde transport, Golgi to ER // traceable author statement /// 6891 // intra-Golgi transport // traceable author statement /// 6906 // vesicle fusion // traceable author statement 5783 // endoplasmic reticulum // inferred from direct assay /// 5794 // Golgi apparatus // inferred from direct assay /// 16021 // integral to membrane // inferred from direct assay 5485 // v-SNARE activity // traceable author statement 1019.48022460938 280.753997802734 351.950897216797 1226.90710449219 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR268W /GEN=SEC22 /DB_XREF=GI:6323298 /SEG=NC_001144:+680202,680846 /DEF=Identified in a screen for dense cells that accumulated invertase at the non-permissive temperature, SEC22 encodes a v-SNARE present on ER to Golgi vesicles and is involved in anterograde and retrograde transport between the ER and Golgi /NOTE=Sec22p; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 9580559]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 9580559]; go_component: integral to membrane [goid GO:0016021] [evidence IDA] [pmid 1903839]; go_function: v-SNARE activity [goid GO:0005485] [evidence TAS] [pmid 10047442]; go_process: ER to Golgi transport [goid GO:0006888] [evidence TAS] [pmid 10047442]; go_process: intra-Golgi transport [goid GO:0006891] [evidence TAS] [pmid 10047442]; go_process: retrograde transport, Golgi to ER [goid GO:0006890] [evidence TAS] [pmid 10047442]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 10047442] --- --- --- --- --- S0004258 // span:189-211 // numtm:1 S0004258 // SEC22 SGDID:S0004258, Chr XII from 680202-680846, Verified ORF // sgd // 11 // --- /// GENSCAN00000018030 // cdna:Genscan chromosome:SGD1:XII:680202:680846:1 // ensembl // 11 // --- /// YLR268W // cdna:known chromosome:SGD1:XII:680202:680846:1 gene:YLR268W // ensembl // 11 // --- --- No cerevisiae_gene -1.23144312392887 -3.6312224673135 1.12651483275863 -2.89665471141387 1.2034633677787 Max fold change at or above threshold 4 3.6312224673135 Max fold change at or above threshold 0.631819373420683 -0.925505878301517 -0.775414105086503 1.06910060996734 719.773056030273 474.355775063498 0.659035193231165 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772369_at YJL197W.S1 Ubiquitin-specific protease present in the nucleus and cytoplasm that cleaves ubiquitin from ubiquitinated proteins 3.63088172127255 173.124900817871 645.014617919922 UBP12 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4843 // ubiquitin-specific protease activity // traceable author statement 605.319274902344 166.714126586914 179.535675048828 684.7099609375 0.000732421991415322 0.00195312988944352 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL197W /GEN=UBP12 /DB_XREF=GI:6322264 /SEG=NC_001142:+63804,67568 /DEF=Ubiquitin-specific protease present in the nucleus and cytoplasm that cleaves ubiquitin from ubiquitinated proteins /NOTE=Ubp12p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: ubiquitin-specific protease activity [goid GO:0004843] [evidence TAS] [pmid 8982460]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003733 // UBP12 SGDID:S0003733, Chr X from 63804-67568, Verified ORF // sgd // 11 // --- /// GENSCAN00000023991 // cdna:Genscan chromosome:SGD1:X:63804:67568:1 // ensembl // 11 // --- /// GENEFINDER00000024296 // cdna:GeneFinder chromosome:SGD1:X:63804:67568:1 // ensembl // 11 // --- /// YJL197W // cdna:known chromosome:SGD1:X:63804:67568:1 gene:YJL197W // ensembl // 11 // --- --- No cerevisiae_gene -2.60600797695794 -3.63088172127255 1.27093563723544 -3.37158213674088 1.13115506035714 Max fold change at or above threshold 4 3.63088172127255 Max fold change at or above threshold 0.715151557175243 -0.883166553064365 -0.836443633402569 1.00445862929169 409.069759368896 274.416679324041 0.67083100874385 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770920_at YPL189C-A.S1 Identified by homology to Ashbya gossypii 3.62872291584901 4343.68322753906 1491.71508789063 --- --- --- --- 1407.08642578125 5105.9267578125 3581.43969726563 1576.34375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL189C-A /GEN=NAB3 /DB_XREF=GI:33438891 /SEG=NC_001148:-188306,188512 /DEF=Identified by homology to Ashbya gossypii /NOTE=Ypl189c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028527 // span:13-35 // numtm:1 S0028527 // YPL189C-A SGDID:S0028527, Chr XVI from 188512-188306, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENEFINDER00000020778 // cdna:GeneFinder chromosome:SGD1:XVI:188306:188512:-1 // ensembl // 10 // --- /// YPL189C-A // cdna:known chromosome:SGD1:XVI:188306:188512:-1 gene:YPL189C-A // ensembl // 10 // --- --- No cerevisiae_gene 1.76889527166654 3.62872291584901 1.23861944267177 2.54528764661852 1.12028921686511 Max fold change at or above threshold 4 3.62872291584901 Max fold change at or above threshold -0.857505943567671 1.24215699583091 0.376775228766328 -0.76142628102957 2917.69915771484 1761.63529041986 0.603775507753029 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775911_at SPAC15E1.05c.S1 --- 3.62779112396855 --- --- --- --- 3.49069213867188 1.38383638858795 0.962208688259125 2.33692979812622 0.432372987270355 0.780517995357513 0.601073980331421 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15E1.05c /DEF=ethanolamine-phosphate cytidylyltransferase activity (predicted) --- --- --- --- --- --- D89199 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1101. // gb // 10 // --- /// SPAC15E1.05c // |||ethanolamine-phosphate cytidylyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.01432030983625 -2.52247459848467 1.2202378740722 -3.62779112396855 -1.49370860069085 Max fold change at or above threshold 1 3.62779112396855 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774695_at SPBC25D12.05.S1 --- 3.62534936594289 --- --- --- --- 1.43954813480377 2.29119253158569 2.93210077285767 5.21886491775513 0.665526986122131 0.780517995357513 0.601073980331421 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25D12.05 /GEN=trm1 /DEF=N2,N2-dimethylguanosine tRNA methyltransferase --- --- --- --- --- --- SPBC25D12.05 // |trm1||N2,N2-dimethylguanosine tRNA methyltransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -3.41253875322342 1.5916053629551 1.69937739140372 2.03682023682893 3.62534936594289 Max fold change at or above threshold 2 3.62534936594289 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779821_at SPAC694.06c.S1 --- 3.62504188734988 --- --- --- --- 1.29442179203033 0.357077747583389 3.546950340271 3.00936937332153 0.753906011581421 0.991943001747131 0.567627012729645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC694.06c /GEN=mrc1 /DEF=involved in DNA replication checkpoint (PMID 11715016) --- --- --- --- --- --- SPAC694.06c // |mrc1||mediator of replication checkpoint 1 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.68084386673282 -3.62504188734988 -2.74168815712546 2.74018126248285 2.32487539366999 Max fold change at or above threshold 2 3.62504188734988 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775381_at YLR107W.S1 RNA exonuclease; required for maturation of the RNA component of RNase MRP; functions redundantly with Rnh70p and Rex2p in processing of U5 snRNA and RNase P RNA; member of RNase D family of exonucleases 3.62502948041534 287.027053833008 827.310333251953 REX3 6396 // RNA processing // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8408 // 3'-5' exonuclease activity // inferred from mutant phenotype /// 8408 // 3'-5' exonuclease activity // inferred from sequence similarity 798.592346191406 286.644287109375 287.409820556641 856.0283203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR107W /GEN=REX3 /DB_XREF=GI:6323136 /SEG=NC_001144:+364117,365331 /DEF=RNA EXonuclease; member of 3'->5' exonuclease family. See Moser et al. 1997 Nucleic acids Res. 25:5110-5118 /NOTE=Rex3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: 3'-5' exonuclease activity [goid GO:0008408] [evidence IMP,ISS] [pmid 10716935]; go_process: RNA processing [goid GO:0006396] [evidence IMP] [pmid 10716935] --- --- --- --- --- --- S0004097 // REX3 SGDID:S0004097, Chr XII from 364117-365331, Verified ORF // sgd // 11 // --- /// GENSCAN00000017903 // cdna:Genscan chromosome:SGD1:XII:364117:365331:1 // ensembl // 11 // --- /// YLR107W // cdna:known chromosome:SGD1:XII:364117:365331:1 gene:YLR107W // ensembl // 11 // --- --- No cerevisiae_gene -3.62502948041534 -2.78600475259668 1.06837776155967 -2.77858406036625 1.07192151840049 Max fold change at or above threshold 4 3.62502948041534 Max fold change at or above threshold 0.771782879051805 -0.864812138164176 -0.862364881644533 0.955394140756904 557.16869354248 312.812915655156 0.561433044032482 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778311_at SPAC1296.04.S1 --- 3.62497820777256 --- --- --- --- 1.37577199935913 4.98714351654053 1.41591775417328 0.674304723739624 0.601073980331421 0.688720703125 0.805419981479645 0.845458984375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1296.04 /DEF=hypothetical protein --- --- --- --- --- --- SPAC1296.04 // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.49036324307163 3.62497820777256 -1.98833340454535 1.02918052906503 -2.04028230994622 Max fold change at or above threshold 1 3.62497820777256 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778819_at SPAC343.11c.S1 --- 3.6235340315074 --- --- --- --- 6.0281810760498 1.66361927986145 5.19255924224854 4.79762554168701 0.129638999700546 0.5 0.303710997104645 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC343.11c /GEN=msc1 /DEF=transcription factor (predicted) --- --- --- --- --- --- SPAC343.11c // |msc1||multi-copy Suppressor of Chk1 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.07743900100482 -3.6235340315074 -1.57308452689546 -1.16092677903458 -1.25649261778986 Max fold change at or above threshold 3 3.6235340315074 Max fold change at or above threshold APAAAP No 4 0 AAAP 3 1 0 No No x = 1
1779994_at SPAC23C4.15.S1 --- 3.62332144213857 --- --- --- --- 4.81871747970581 5.46701908111572 6.32993173599243 1.32991719245911 0.398925989866257 0.533936023712158 0.111571997404099 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C4.15 /GEN=rpb5 /DEF=DNA-directed RNA polymerase (I, II, and III subunit) (PMID 9077438) --- --- --- --- --- --- AF027820 // Schizosaccharomyces pombe RNA polymerases I, II and III subunit Rpb5 (rpb5+) mRNA, complete cds. // gb // 11 // --- /// SPAC23C4.15 // |rpb5||DNA-directed RNA polymerase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.51111306832536 1.13453820526733 -1.39847420804636 1.31361337589331 -3.62332144213857 Max fold change at or above threshold 3 3.62332144213857 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772761_at SPBC30D10.18c.S1 --- 3.62274109431141 --- --- --- --- 24.5090885162354 6.76534366607666 8.56708526611328 14.0140514373779 0.0461426004767418 0.149657994508743 0.0107421996071935 0.014160200022161 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30D10.18c /GEN=rpl102 /DEF=60S ribosomal protein L10 --- --- --- --- --- --- SPBC30D10.18c // |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.4611517674914 -3.62274109431141 -2.03668202599904 -2.86084330375232 -1.74889386026266 Max fold change at or above threshold 4 3.62274109431141 Max fold change at or above threshold PPAPPP No 4 0 PAPP 1 3 0 No No 2 < x = 3
1779103_at SPAC23C4.05c.S1 --- 3.62255486537758 --- --- --- --- 4.42515134811401 16.0303535461426 12.7597208023071 5.05642700195313 0.24609400331974 0.171387001872063 0.149657994508743 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C4.05c /DEF=hypothetical protein --- --- --- --- --- --- SPAC23C4.05c // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.36882162751617 3.62255486537758 2.77973236611436 2.88345410100951 1.14265628544166 Max fold change at or above threshold 4 3.62255486537758 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777740_x_at YGR174W-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 3.62125174719366 3.32132959365845 4.74189186096191 --- --- --- --- 7.29240131378174 4.6288800239563 2.0137791633606 2.19138240814209 0.129638999700546 0.0676269978284836 0.274170011281967 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR174W-A /GEN=CBP4 /DB_XREF=GI:33438799 /SEG=NC_001139:+846658,846744 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ygr174w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028639 // YGR174W-A SGDID:S0028639, Chr VII from 846660-846746, Uncharacterized ORF // sgd // 11 // --- /// YGR174W-A // cdna:known chromosome:SGD1:VII:846660:846746:1 gene:YGR174W-A // ensembl // 11 // --- GENEFINDER00000021559 // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene -1.20092328010066 -1.57541376662187 -1.57678695281406 -3.62125174719366 -3.32776300781041 Max fold change at or above threshold 2 3.62125174719366 Max fold change at or above threshold 1.31496425769604 0.240858085326709 -0.813721799754019 -0.742100543268727 4.03161072731018 2.47975605982236 0.615078247268383 APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778960_at YBR083W.S1 Transcription factor required for full Ty1 epxression, Ty1-mediated gene activation, and haploid invasive and diploid pseudohyphal growth; TEA/ATTS DNA-binding domain family member 3.62087314380194 221.011772155762 797.436004638672 TEC1 1403 // invasive growth (sensu Saccharomyces) // traceable author statement /// 7124 // pseudohyphal growth // inferred from mutant phenotype /// 7124 // pseudohyphal growth // inferred from direct assay /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from curator 3704 // specific RNA polymerase II transcription factor activity // inferred from direct assay 732.484802246094 239.728469848633 202.295074462891 862.38720703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR083W /GEN=TEC1 /DB_XREF=GI:6319557 /SEG=NC_001134:+409126,410586 /DEF=transcription factor of the TEA/ATTS DNA-binding domain family, regulator of Ty1 expression /NOTE=Tec1p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 9036858]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IDA] [pmid 9036858]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IDA] [pmid 9036858]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IDA,IMP] [pmid 9036858] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 1.79999995231628 /// scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 6.09999990463257 /// scop // a.4.5.Forkhead DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Forkhead DNA-binding domain // 3.29999995231628 --- S0000287 // TEC1 SGDID:S0000287, Chr II from 409163-410623, Verified ORF // sgd // 11 // --- /// GENSCAN00000021206 // cdna:Genscan chromosome:SGD1:II:409163:410623:1 // ensembl // 11 // --- /// GENEFINDER00000022283 // cdna:GeneFinder chromosome:SGD1:II:409163:410623:1 // ensembl // 11 // --- /// YBR083W // cdna:known chromosome:SGD1:II:409163:410623:1 gene:YBR083W // ensembl // 11 // --- --- No cerevisiae_gene -1.24971959222237 -3.0554769014652 -1.19804892531266 -3.62087314380194 1.17734484645528 Max fold change at or above threshold 4 3.62087314380194 Max fold change at or above threshold 0.661819804413623 -0.798874295188632 -0.909839362856047 1.04689385363106 509.223888397217 337.343960334774 0.662466879542051 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770255_at SPAC30D11.03.S1 --- 3.61952270093102 --- --- --- --- 0.675913214683533 0.824148416519165 0.952146112918854 2.0693097114563 0.725830018520355 0.904784977436066 0.753906011581421 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30D11.03 /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPAC30D11.03 // |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.61952270093102 1.21931099823967 1.02479298395001 1.40868101441789 3.06150207822932 Max fold change at or above threshold 0 3.61952270093102 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776944_at YGR289C.S1 Maltose permease, inducible high-affinity maltose transporter (alpha-glucoside transporter); encoded in the MAL1 complex locus; member of the 12 transmembrane domain superfamily of sugar transporters 3.61907145103192 7069.21508789063 2178.72912597656 MAL11 17 // alpha-glucoside transport // traceable author statement /// 15771 // trehalose transport // inferred from direct assay 5624 // membrane fraction // traceable author statement 5352 // alpha-glucoside:hydrogen symporter activity // traceable author statement /// 5352 // alpha-glucoside:hydrogen symporter activity // inferred from direct assay /// 5364 // maltose:hydrogen symporter activity // inferred from mutant phenotype /// 15574 // trehalose transporter activity // inferred from direct assay 2216.65893554688 8022.2470703125 6116.18310546875 2140.79931640625 0.000732421991415322 0.00122069998178631 0.00292969006113708 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR289C /GEN=MAL11 /DB_XREF=GI:6321729 /SEG=NC_001139:-1073968,1075818 /DEF=Part of MAL1 complex locus; encodes funct. maltose permease in all strains, exhibits sign. seq. variability; shows homol. to functional maltose permease from S. carlsbergenesis; member of the 12 tm domain superfamily of sugar transporters /NOTE=Mal11p; go_component: membrane fraction [goid GO:0005624] [evidence TAS] [pmid 8594329]; go_function: alpha-glucoside:hydrogen symporter activity [goid GO:0005352] [evidence IDA] [pmid 12702465]; go_function: alpha-glucoside:hydrogen symporter activity [goid GO:0005352] [evidence TAS] [pmid 8594329]; go_function: maltose:hydrogen symporter activity [goid GO:0005364] [evidence IMP] [pmid 1999393]; go_function: trehalose transporter activity [goid GO:0015574] [evidence IDA] [pmid 12702465]; go_process: alpha-glucoside transport [goid GO:0000017] [evidence TAS] [pmid 8594329]; go_process: trehalose transport [goid GO:0015771] [evidence IDA] [pmid 12702465] --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 5.30000019073486 S0003521 // span:181-203,207-229,242-264,284-306,372-394,404-426,433-455,465-487,500-522,533-550 // numtm:10 S0003521 // MAL11 SGDID:S0003521, Chr VII from 1075819-1073969, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019565 // cdna:Genscan chromosome:SGD1:VII:1073969:1075819:-1 // ensembl // 11 // --- /// GENEFINDER00000021468 // cdna:GeneFinder chromosome:SGD1:VII:1073969:1075819:-1 // ensembl // 11 // --- /// YGR289C // cdna:known chromosome:SGD1:VII:1073969:1075819:-1 gene:YGR289C // ensembl // 11 // --- --- No cerevisiae_gene -1.69567611168478 3.61907145103192 1.9976864199149 2.75918997162268 -1.03543518468044 Max fold change at or above threshold 4 3.61907145103192 Max fold change at or above threshold -0.821902716076963 1.16023600733616 0.509469348331389 -0.847802639590582 4623.97210693359 2928.95147357233 0.633427582571356 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775053_at SPBP23A10.14c.S1 --- 3.6189145457126 --- --- --- --- 1.61093401908875 3.92973351478577 5.82983255386353 1.99403822422028 0.805419981479645 0.5 0.303710997104645 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP23A10.14c /DEF=sequence orphan --- --- --- --- --- --- SPBP23A10.14c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.14080518332268 2.43941307851249 3.16814970280817 3.6189145457126 1.2378149574048 Max fold change at or above threshold 2 3.6189145457126 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773093_at YPL208W.S1 Hypothetical protein 3.61849180851402 84.6040344238281 340.025390625 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 298.065063476563 82.3727340698242 86.835334777832 381.985717773438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL208W /GEN=IPL1 /DB_XREF=GI:6325048 /SEG=NC_001148:+157841,159592 /DEF=Hypothetical ORF /NOTE=Ypl208wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006129 // YPL208W SGDID:S0006129, Chr XVI from 157841-159592, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017028 // cdna:Genscan chromosome:SGD1:XVI:157841:159592:1 // ensembl // 11 // --- /// GENEFINDER00000021035 // cdna:GeneFinder chromosome:SGD1:XVI:158309:159592:1 // ensembl // 11 // --- /// YPL208W // cdna:known chromosome:SGD1:XVI:157841:159592:1 gene:YPL208W // ensembl // 11 // --- --- No cerevisiae_gene -1.10101038909184 -3.61849180851402 -1.0035660671846 -3.43253197836067 1.28155146167767 Max fold change at or above threshold 4 3.61849180851402 Max fold change at or above threshold 0.566360181406027 -0.858235117088529 -0.828760726389645 1.12063566207215 212.314712524414 151.406037654814 0.713120800035957 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770552_s_at SPAC977.07c.S1 --- 3.61756257531619 --- --- --- --- 14.8313093185425 9.40493679046631 8.70610809326172 11.1255102157593 0.0375977009534836 0.0561522990465164 0.149657994508743 0.018554700538516 P M A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC977.07c /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPAC977.07c // |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPBC1348.08c // ||SPAC1348.08c|glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.61756257531619 -1.57697065370783 -1.57556664102481 -1.70355216816358 -1.33309026111305 Max fold change at or above threshold 4 3.61756257531619 Max fold change at or above threshold PAMPAP No 4 0 PMAP 1 2 1 No No 1 < x = 2
1776972_at SPBC216.01c.S1 --- 3.61635243609336 --- --- --- --- 1.88046181201935 6.07909202575684 6.80041265487671 3.29326558113098 0.828612983226776 0.24609400331974 0.0461426004767418 0.432372987270355 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC216.01c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC216.01c // ||SPBC713.13c|replication fork protection complex subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.80770849988687 3.23276547649152 -1.94366073099684 3.61635243609336 1.75130681201895 Max fold change at or above threshold 3 3.61635243609336 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1775729_at YNL117W.S1 Malate synthase, enzyme of the glyoxylate cycle, involved in utilization of non-fermentable carbon sources; expression is subject to carbon catabolite repression; localizes in peroxisomes during growth in oleic acid medium 3.61121199485677 5880.69604492188 1877.20379638672 MLS1 6097 // glyoxylate cycle // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5782 // peroxisomal matrix // traceable author statement 4474 // malate synthase activity // traceable author statement 1875.38061523438 6772.39697265625 4988.9951171875 1879.02697753906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL117W /GEN=MLS1 /DB_XREF=GI:6324212 /SEG=NC_001146:+406358,408022 /DEF=carbon-catabolite sensitive malate synthase /NOTE=Mls1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: peroxisomal matrix [goid GO:0005782] [evidence TAS]; go_function: malate synthase activity [goid GO:0004474] [evidence TAS]; go_process: glyoxylate cycle [goid GO:0006097] [evidence TAS] --- --- --- --- --- --- S0005061 // MLS1 SGDID:S0005061, Chr XIV from 406358-408022, Verified ORF // sgd // 11 // --- /// GENSCAN00000019939 // cdna:Genscan chromosome:SGD1:XIV:406358:408022:1 // ensembl // 11 // --- /// GENEFINDER00000020683 // cdna:GeneFinder chromosome:SGD1:XIV:406358:408022:1 // ensembl // 11 // --- /// YNL117W // cdna:known chromosome:SGD1:XIV:406358:408022:1 gene:YNL117W // ensembl // 11 // --- --- No cerevisiae_gene -2.71531910365995 3.61121199485677 -1.44187923577515 2.66025737744122 1.00194433187326 Max fold change at or above threshold 4 3.61121199485677 Max fold change at or above threshold -0.826768665086406 1.19397484789301 0.4580578185345 -0.825264001341102 3878.9499206543 2423.37353848616 0.62474989057796 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779765_at SPCC576.15c.S1 --- 3.61012964560034 --- --- --- --- 3.30472421646118 6.55887460708618 11.9304828643799 7.2569317817688 0.274170011281967 0.129638999700546 0.0461426004767418 0.0805663987994194 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC576.15c /GEN=ksg1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPCC576.15c // |ksg1||phosphoinositide-dependent kinase 1 family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.10834839114991 1.98469650641822 1.89183969027383 3.61012964560034 2.19592659067321 Max fold change at or above threshold 4 3.61012964560034 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1772604_at SPAP27G11.12.S1 --- 3.6083934503332 --- --- --- --- 2.4656720161438 6.99421739578247 8.89711475372314 4.75054264068604 0.42333984375 0.149657994508743 0.00195312988944352 0.111571997404099 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP27G11.12 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAP27G11.12 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 2.96538873683036 2.8366373751206 1.54567541480778 3.6083934503332 1.92667257022922 Max fold change at or above threshold 3 3.6083934503332 Max fold change at or above threshold AAAAPA No 3 0 AAPA 3 1 0 No No x = 1
1774506_at SPAC27E2.01.S1 --- 3.60818267180233 --- --- --- --- 2.17729210853577 3.03073048591614 7.8560676574707 1.44803476333618 0.35693359375 0.274170011281967 0.0239257998764515 0.466064006090164 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27E2.01 /DEF=alpha-amylase (predicted) --- --- --- --- --- --- SPAC27E2.01 // |||alpha-amylase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.1829322317775 1.39197238351004 1.93356536879019 3.60818267180233 -1.50361867246849 Max fold change at or above threshold 2 3.60818267180233 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1773008_at SPBC1198.12.S1 --- 3.60809122400382 --- --- --- --- 6.1015419960022 1.6910719871521 14.3578205108643 1.85834276676178 0.111571997404099 0.919434010982513 0.303710997104645 0.799560546875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1198.12 /GEN=mfr1 /DEF=WD repeat protein --- --- --- --- --- --- SPBC1198.12 // |mfr1|SPBC660.02|WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.57998652845635 -3.60809122400382 -1.69022923685836 2.3531462243924 -3.2833243173079 Max fold change at or above threshold 2 3.60809122400382 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777602_at YER082C.S1 Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA 3.60625960330616 154.28759765625 491.358276367188 UTP7 6364 // rRNA processing // inferred from mutant phenotype /// 6364 // rRNA processing // inferred from physical interaction 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction 30515 // snoRNA binding // inferred from physical interaction 460.049133300781 127.569610595703 181.005584716797 522.667419433594 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER082C /GEN=UTP7 /DB_XREF=GI:6320926 /SEG=NC_001137:-324268,325932 /DEF=Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA /NOTE=Utp7p; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: snoRNA binding [goid GO:0030515] [evidence IPI] [pmid 12068309]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP,IPI] [pmid 12068309] --- --- --- --- --- --- S0000884 // UTP7 SGDID:S0000884, Chr V from 325932-324268, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016871 // cdna:Genscan chromosome:SGD1:V:324268:325932:-1 // ensembl // 11 // --- /// GENEFINDER00000019615 // cdna:GeneFinder chromosome:SGD1:V:324268:325932:-1 // ensembl // 11 // --- /// YER082C // cdna:known chromosome:SGD1:V:324268:325932:-1 gene:YER082C // ensembl // 11 // --- --- No cerevisiae_gene 1.01689451796995 -3.60625960330616 -1.39717115958174 -2.54162949734716 1.13611217063607 Max fold change at or above threshold 4 3.60625960330616 Max fold change at or above threshold 0.694857397683955 -0.988683079116886 -0.718105136095887 1.01193081752882 322.822937011719 197.48828572086 0.611754194261888 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773176_at YGR227W.S1 Dolichyl-phosphoglucose-dependent glucosyltransferase of the ER, functions in the dolichol pathway that synthesizes the dolichol-linked oligosaccharide precursor for N-linked protein glycosylation, has a role in regulation of ITR1 and INO1 3.60568505167731 116.894828796387 424.364303588867 DIE2 6487 // N-linked glycosylation // inferred from mutant phenotype /// 6488 // dolichol-linked oligosaccharide biosynthesis // traceable author statement 5789 // endoplasmic reticulum membrane // inferred from mutant phenotype 4583 // dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity // inferred from direct assay 376.711395263672 104.477066040039 129.312591552734 472.017211914063 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR227W /GEN=DIE2 /DB_XREF=GI:6321666 /SEG=NC_001139:+947420,948997 /DEF=Dolichyl-phosphoglucose-dependent glucosyltransferase of the ER, functions in the dolichol pathway that synthesizes the dolichol-linked oligosaccharide precursor for N-linked protein glycosylation, has a role in regulation of ITR1 and INO1 /NOTE=Die2p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IMP] [pmid 9597543]; go_function: dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity [goid GO:0004583] [evidence IDA] [pmid 9597543]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IMP] [pmid 9597543]; go_process: dolichol-linked oligosaccharide biosynthesis [goid GO:0006488] [evidence TAS] [pmid 10336995] --- --- --- --- --- S0003459 // span:36-58,95-112,124-146,150-172,185-207,217-234,260-277,292-314,334-356,376-394,493-515 // numtm:11 S0003459 // DIE2 SGDID:S0003459, Chr VII from 947422-948999, Verified ORF // sgd // 11 // --- /// YGR227W // cdna:known chromosome:SGD1:VII:947422:948999:1 gene:YGR227W // ensembl // 11 // --- --- No cerevisiae_gene -1.23916381070549 -3.60568505167731 1.22573316324369 -2.91318417441233 1.2529942493077 Max fold change at or above threshold 4 3.60568505167731 Max fold change at or above threshold 0.582821802092832 -0.912854731193475 -0.776406426502785 1.10643935560343 270.629566192627 182.014174298422 0.672558349256152 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780197_at YNL024C.S1 Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family 3.60361337883933 29.6033992767334 42.5982780456543 --- --- 5737 // cytoplasm // inferred from direct assay 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from sequence similarity 40.4444313049316 32.4038925170898 26.802906036377 44.752124786377 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL024C /GEN=SSN8 /DB_XREF=GI:6324304 /SEG=NC_001146:-587105,587845 /DEF=Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family /NOTE=Ynl024cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: S-adenosylmethionine-dependent methyltransferase activity [goid GO:0008757] [evidence ISS] [pmid 12872006]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004969 // YNL024C SGDID:S0004969, Chr XIV from 587846-587106, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020017 // cdna:Genscan chromosome:SGD1:XIV:587106:587846:-1 // ensembl // 11 // --- /// GENEFINDER00000020420 // cdna:GeneFinder chromosome:SGD1:XIV:587106:587846:-1 // ensembl // 11 // --- /// YNL024C // cdna:known chromosome:SGD1:XIV:587106:587846:-1 gene:YNL024C // ensembl // 11 // --- --- No cerevisiae_gene 3.60361337883933 -1.24813496661246 -1.40361018792708 -1.50895694855029 1.10650893936343 Max fold change at or above threshold 4 3.60361337883933 Max fold change at or above threshold 0.540379227881765 -0.459930998767017 -1.15674052905007 1.07629229993532 36.1008386611938 8.03804517202532 0.222655358438133 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774250_at SPCC613.08.S1 --- 3.60243367790851 --- --- --- --- 6.15389013290405 4.60737705230713 9.04697704315186 1.70825910568237 0.24609400331974 0.303710997104645 0.030273400247097 0.334473013877869 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC613.08 /DEF=cdk inhibitor (predicted) --- --- --- --- --- --- SPCC613.08 // |||CDK inhibitor |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.35936535668932 -1.33566019516951 1.45898968381506 1.47012326313381 -3.60243367790851 Max fold change at or above threshold 3 3.60243367790851 Max fold change at or above threshold APAAPA No 4 0 AAPA 3 1 0 No No x = 1
1776591_at SPAC1A6.09c.S1 --- 3.60018951263112 --- --- --- --- 7.10097455978394 3.75967001914978 1.97238910198212 3.24374556541443 0.326416015625 0.633789002895355 0.45751953125 0.014160200022161 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1A6.09c /GEN=lag1 /DEF=longevity-assurance protein 1 --- --- --- --- --- --- SPAC1A6.09c // |||LAG1 domain protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.48047709468326 -1.88872281971963 -1.03735851611666 -3.60018951263112 -2.18912809792981 Max fold change at or above threshold 3 3.60018951263112 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1771340_at YLR267W.S1 Protein of unknown function, overproduction suppresses a pam1 slv3 double null mutation 3.59899254944717 174.307598114014 472.068862915039 --- --- --- --- 438.490447998047 121.83699798584 226.778198242188 505.647277832031 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR267W /GEN=PDR8 /DB_XREF=GI:6323297 /SEG=NC_001144:+678214,679926 /DEF=Protein of unknown function, overproduction suppresses a pam1 slv3 double null mutation /NOTE=Ylr267wp --- --- --- --- --- --- S0004257 // BOP2 SGDID:S0004257, Chr XII from 678214-679926, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018029 // cdna:Genscan chromosome:SGD1:XII:678214:679926:1 // ensembl // 11 // --- /// GENEFINDER00000024675 // cdna:GeneFinder chromosome:SGD1:XII:678214:679926:1 // ensembl // 11 // --- /// YLR267W // cdna:known chromosome:SGD1:XII:678214:679926:1 gene:YLR267W // ensembl // 11 // --- --- No cerevisiae_gene -3.39731148479776 -3.59899254944717 1.24730905306103 -1.93356526948751 1.15315460152118 Max fold change at or above threshold 4 3.59899254944717 Max fold change at or above threshold 0.643143227141905 -1.12311527309531 -0.537764673028507 1.01773671898192 323.188230514526 179.279222135196 0.554720763964015 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773149_at SPAC24B11.13.S1 --- 3.59595276881283 --- --- --- --- 7.32871103286743 22.5359077453613 26.3536987304688 14.2133760452271 0.171387001872063 0.0952147990465164 0.023193359375 0.0561522990465164 A A P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24B11.13 /DEF=porphobilinogen deaminase (putative) --- --- --- --- --- --- D89238 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1522. // gb // 10 // --- /// SPAC24B11.13 // |hem3|SPAC806.01|hydroxymethylbilane synthase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.36856020796099 3.07501655397428 -1.21902926399109 3.59595276881283 1.93941007927364 Max fold change at or above threshold 4 3.59595276881283 Max fold change at or above threshold AAAAPM No 4 0 AAPM 2 1 1 No No x = 1
1772583_s_at YBR089C-A.S1 High-mobility group non-histone chromatin protein, functionally redundant with Nhp6Ap; homologous to mammalian high mobility group proteins 1 and 2; acts to recruit transcription factor Rcs1p to certain promoters /// Hypothetical protein 3.59584186762753 2057.64221191406 632.594604492188 NHP6B 6325 // establishment and/or maintenance of chromatin architecture // inferred from sequence similarity /// 6338 // chromatin remodeling // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence similarity /// 6359 // regulation of transcription from RNA polymerase III promoter // inferred from mutant phenotype /// 6359 // regulation of transcription from RNA polymerase III promoter // inferred from genetic interaction /// 6359 // regulation of transcription from RNA polymerase III promoter // inferred from direct assay /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from physical interaction 790 // nuclear chromatin // inferred from sequence similarity /// 35101 // FACT complex // inferred from genetic interaction /// 35101 // FACT complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3682 // chromatin binding // inferred from sequence similarity /// 3682 // chromatin binding // inferred from direct assay 590.645324707031 1991.41723632813 2123.8671875 674.543884277344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR089C-A /GEN=NHP6B /DB_XREF=GI:6319565 /SEG=NC_001134:-426147,426446 /DEF=Homologous to mammalian high mobility group proteins 1 and 2; functions redundantly with the highly homologous gene, NHP6A; high-mobility group non-histone chromatin protein /NOTE=Nhp6bp; go_component: nuclear chromatin [goid GO:0000790] [evidence ISS] [pmid 10228169]; go_function: chromatin binding [goid GO:0003682] [evidence ISS] [pmid 10228169]; go_process: establishment and/or maintenance of chromatin architecture [goid GO:0006325] [evidence ISS] [pmid 10228169]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence ISS] [pmid 9872947]; go_process: regulation of transcription from Pol III promoter [goid GO:0006359] [evidence IGI,IMP] [pmid 11239460]; go_process: regulation of transcription from Pol III promoter [goid GO:0006359] [evidence IDA] [pmid 11287614] --- --- --- --- --- S0000294 // span:10-27 // numtm:1 S0002157 // NHP6B SGDID:S0002157, Chr II from 426483-426184, reverse complement, Verified ORF // sgd // 11 // --- /// S0000294 // YBR090C SGDID:S0000294, Chr II from 427052-426868,426510-426327, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021212 // cdna:Genscan chromosome:SGD1:II:426184:426483:-1 // ensembl // 11 // --- /// GENEFINDER00000022231 // cdna:GeneFinder chromosome:SGD1:II:426184:426483:-1 // ensembl // 11 // --- /// YBR089C-A // cdna:known chromosome:SGD1:II:426184:426483:-1 gene:YBR089C-A // ensembl // 11 // --- /// YBR090C // cdna:known chromosome:SGD1:II:426327:427052:-1 gene:YBR090C // ensembl // 11 // --- --- No cerevisiae_gene 2.86007766969825 3.37159569885006 -1.01903442102908 3.59584186762753 1.1420455831288 Max fold change at or above threshold 4 3.59584186762753 Max fold change at or above threshold -0.914249441162148 0.783166895363593 0.943666052311274 -0.812583506512719 1345.11840820313 825.237675329662 0.613505599430503 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773616_at SPBC3B8.08.S1 --- 3.59533602306933 --- --- --- --- 5.76459074020386 1.60335242748261 7.44457197189331 5.33285570144653 0.334473013877869 0.398925989866257 0.111571997404099 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B8.08 /DEF=sequence orphan --- --- --- --- --- --- SPBC3B8.08 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.12849055725087 -3.59533602306933 -1.21704461233379 1.29143113664129 -1.08095757000142 Max fold change at or above threshold 3 3.59533602306933 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773150_at YNL063W.S1 --- 3.59473440907659 1329.96545410156 449.357513427734 --- --- 5739 // mitochondrion // inferred from direct assay 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from sequence similarity 435.045471191406 1096.05798339844 1563.87292480469 463.669555664063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL063W /GEN=YDJ1 /DB_XREF=GI:6324266 /SEG=NC_001146:+507756,508700 /DEF=Ynl063wp /NOTE=go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: S-adenosylmethionine-dependent methyltransferase activity [goid GO:0008757] [evidence ISS] [pmid 10220893]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005007 // YNL063W SGDID:S0005007, Chr XIV from 507757-508701, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019983 // cdna:Genscan chromosome:SGD1:XIV:507757:508701:1 // ensembl // 11 // --- /// GENEFINDER00000020669 // cdna:GeneFinder chromosome:SGD1:XIV:507757:508701:1 // ensembl // 11 // --- /// YNL063W // cdna:known chromosome:SGD1:XIV:507757:508701:1 gene:YNL063W // ensembl // 11 // --- --- No cerevisiae_gene 2.93112151951834 2.51941016739422 1.4375279276802 3.59473440907659 1.0657956153279 Max fold change at or above threshold 4 3.59473440907659 Max fold change at or above threshold -0.83687152944724 0.379941202122215 1.24110973707312 -0.784179409748091 889.661483764648 543.232738331437 0.610606110576711 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774430_at YBR297W.S1 MAL-activator protein, part of complex locus MAL3; nonfunctional in genomic reference strain S288C 3.59427728966579 64.5526065826416 25.900764465332 MAL33 5975 // carbohydrate metabolism // inferred from sequence similarity /// 6355 // regulation of transcription, DNA-dependent // inferred from sequence similarity 5634 // nucleus // inferred from sequence similarity 3700 // transcription factor activity // inferred from sequence similarity 22.2818126678467 49.0181999206543 80.0870132446289 29.5197162628174 0.00805663969367743 0.018554700538516 0.00805663969367743 0.0375977009534836 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR297W /GEN=MAL33 /DB_XREF=GI:6319774 /SEG=NC_001134:+800479,801885 /DEF=Part of complex locus MAL3; nonfunctional in S288C, shows homology to both functional & nonfunctional MAL-activator proteins in other Sc strains & to other nonfunctional MAL-activator sequences from S288C (i.e. MAL33, YPR196W, & YFL052W) /NOTE=Mal33p; go_component: nucleus [goid GO:0005634] [evidence ISS] [pmid 10447589]; go_function: transcription factor activity [goid GO:0003700] [evidence ISS] [pmid 10447589]; go_process: carbohydrate metabolism [goid GO:0005975] [evidence ISS] [pmid 2549370]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence ISS] [pmid 10447589] --- --- --- --- --- --- S0000501 // MAL33 SGDID:S0000501, Chr II from 800517-801923, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022296 // cdna:GeneFinder chromosome:SGD1:II:800517:801923:1 // ensembl // 11 // --- /// GENSCAN00000021376 // cdna:Genscan chromosome:SGD1:II:800697:801923:1 // ensembl // 11 // --- /// YBR297W // cdna:known chromosome:SGD1:II:800517:801923:1 gene:YBR297W // ensembl // 11 // --- --- No cerevisiae_gene 2.37656422178674 2.19991975748854 1.74259650694264 3.59427728966579 1.32483459505138 Max fold change at or above threshold 4 3.59427728966579 Max fold change at or above threshold -0.888031008287205 0.146742253649362 1.34919256990783 -0.60790381526999 45.2266855239868 25.8379185434022 0.571298078646479 PPPPPP Called_P_>2EXP 4 0 PPPP 0 4 0 Yes Yes 3 < x
1778078_at YPL069C.S1 Geranylgeranyl diphosphate synthase, increases the intracellular pool of geranylgeranyl diphosphate, suppressor of bet2 mutation that causes defective geranylgeranylation of small GTP-binding proteins that mediate vesicular traffic 3.59378099245391 70.9562015533447 207.857917785645 BTS1 16114 // terpenoid biosynthesis // inferred from direct assay /// 16114 // terpenoid biosynthesis // inferred from mutant phenotype /// 16114 // terpenoid biosynthesis // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay 4311 // farnesyltranstransferase activity // inferred from direct assay /// 4311 // farnesyltranstransferase activity // inferred from sequence similarity 188.865142822266 89.3590774536133 52.5533256530762 226.850692749023 0.000732421991415322 0.014160200022161 0.018554700538516 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL069C /GEN=BTS1 /DB_XREF=GI:6325188 /SEG=NC_001148:-422880,423887 /DEF=Required for membrane attachment of YPT1 and SEC4 /NOTE=Bts1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: farnesyltranstransferase activity [goid GO:0004311] [evidence IDA,ISS] [pmid 7665600]; go_process: terpenoid biosynthesis [goid GO:0016114] [evidence IDA,IGI,IMP] [pmid 7665600] --- --- --- --- --- --- S0005990 // BTS1 SGDID:S0005990, Chr XVI from 423889-422882, reverse complement, Verified ORF // sgd // 11 // --- /// YPL069C // cdna:known chromosome:SGD1:XVI:422882:423889:-1 gene:YPL069C // ensembl // 11 // --- --- No cerevisiae_gene 1.55701482031944 -2.11355296187236 -1.10477904046095 -3.59378099245391 1.20112525455533 Max fold change at or above threshold 4 3.59378099245391 Max fold change at or above threshold 0.603613402901515 -0.610812852579995 -1.06001030776738 1.06720975744586 139.407059669495 81.936688143488 0.587751354470448 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1774165_at SPAC3H5.07.S1 --- 3.58949660828418 --- --- --- --- 3.81933999061584 8.24380588531494 13.7095079421997 7.98991012573242 0.366210997104645 0.194580003619194 0.0461426004767418 0.0952147990465164 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H5.07 /GEN=rpl701 /DEF=60S ribosomal protein L7 --- --- --- --- --- --- SPAC3H5.07 // |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.56170274764969 2.15843729690733 -1.25899721423949 3.58949660828418 2.09196095277292 Max fold change at or above threshold 4 3.58949660828418 Max fold change at or above threshold AMAAPA No 4 0 AAPA 3 1 0 No No x = 1
1772038_at SPAC823.04.S1 --- 3.5870022418646 --- --- --- --- 1.69269335269928 6.07169485092163 3.70636963844299 1.20462000370026 0.888427972793579 0.24609400331974 0.567627012729645 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC823.04 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC823.04 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.30805739027307 3.5870022418646 2.33999690549019 2.18962851867562 -1.40516789319437 Max fold change at or above threshold 2 3.5870022418646 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776583_at YOR382W.S1 Mannoprotein that is incorporated into the cell wall via a glycosylphosphatidylinositol (GPI) anchor, involved in the retention of siderophore-iron in the cell wall 3.5866856987263 1.16562932729721 0.766829803586006 FIT2 15891 // siderophore transport // inferred from direct assay 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 0.334372073411942 1.15874886512756 1.17250978946686 1.19928753376007 0.99804699420929 0.850341975688934 0.870360970497131 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR382W /GEN=FIT2 /DB_XREF=GI:6324958 /SEG=NC_001147:+1059527,1059988 /DEF=Mannoprotein that is incorporated into the cell wall via a glycosylphosphatidylinositol (GPI) anchor, involved in the retention of siderophore-iron in the cell wall /NOTE=Fit2p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: siderochrome transport [goid GO:0015891] [evidence IDA] [pmid 12196168] --- --- --- --- --- --- S0005909 // FIT2 SGDID:S0005909, Chr XV from 1059527-1059988, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022886 // cdna:GeneFinder chromosome:SGD1:XV:1059563:1059988:1 // ensembl // 9 // --- /// YOR382W // cdna:known chromosome:SGD1:XV:1059527:1059988:1 gene:YOR382W // ensembl // 11 // --- M15165 // gb // 2 // Cross Hyb Matching Probes No cerevisiae_gene 2.93553488450858 3.46544749776397 1.6147868942611 3.50660202421374 3.5866856987263 Max fold change at or above threshold 0 3.5866856987263 Max fold change at or above threshold -1.49880395241712 0.456667351302592 0.489309091012594 0.552827510101939 0.966229565441608 0.421574476775744 0.436308815062047 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778016_at SPBC13G1.11.S1 --- 3.58519969946227 --- --- --- --- 1.31022524833679 4.69741916656494 0.691758871078491 0.45388275384903 0.665526986122131 0.533936023712158 0.696289002895355 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13G1.11 /GEN=ykt6 /DEF=SNARE (predicted) --- --- --- --- --- --- SPBC13G1.11 // |ykt6||SNARE |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.92742967269665 3.58519969946227 1.5117711218468 -1.89404907275577 -2.88670419227385 Max fold change at or above threshold 1 3.58519969946227 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772434_at SPBC13E7.03c.S1 --- 3.583072413965 --- --- --- --- 3.02886557579041 9.98532867431641 3.64647459983826 2.52540802955627 0.601073980331421 0.171387001872063 0.533936023712158 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13E7.03c /DEF=SAM domain (sterile alpha motif) --- --- --- --- --- --- SPBC13E7.03c // |||SAM domain |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.86295935691979 3.29672229567688 -3.583072413965 1.20390770359186 -1.19935691196903 Max fold change at or above threshold 4 3.583072413965 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777712_at YAR075W.S1 Inosine monophosphate dehydrogenase, catalyzes the first step of GMP biosynthesis, member of a four-gene family in S. cerevisiae, constitutively expressed /// Inosine monophosphate dehydrogenase, catalyzes the first step of GMP biosynthesis, expression is induced by mycophenolic acid resulting in resistance to the drug, expression is repressed by nutrient limitation /// Nonfunctional protein with homology to IMP dehydrogenase; IMD1 is a probable pseudogene that is located close to the telomere and is not expressed at detectable levels /// Hypothetical protein 3.58148425064431 1.15902060270309 0.47800312936306 IMD3 /// IMD2 /// IMD1 6183 // GTP biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 3938 // IMP dehydrogenase activity // traceable author statement /// 3938 // IMP dehydrogenase activity // inferred from mutant phenotype 0.747338891029358 0.628255367279053 1.68978583812714 0.208667367696762 0.558104991912842 0.76171875 0.596190989017487 0.97021484375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR075W /GEN=IMD1 /DB_XREF=GI:6319353 /SEG=NC_001133:+228837,229310 /DEF=Hypothetical ORF /NOTE=Yar075wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002145 // YAR075W SGDID:S0002145, Chr I from 228835-229308, Uncharacterized ORF // sgd // 10 // --- /// YAR075W // cdna:known chromosome:SGD1:I:228835:229308:1 gene:YAR075W // ensembl // 10 // --- --- No cerevisiae_gene 2.21492509410791 -1.18954636912383 -2.33439944249662 2.26107039043517 -3.58148425064431 Max fold change at or above threshold 0 3.58148425064431 Max fold change at or above threshold -0.113856515419333 -0.304356281058701 1.39379052839939 -0.975577731921359 0.818511866033077 0.625111129930418 0.763716637316479 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777377_at SPCC417.08.S1 --- 3.58143900149921 --- --- --- --- 8.967041015625 13.9690456390381 9.77442932128906 10.0898389816284 0.366210997104645 0.274170011281967 0.303710997104645 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC417.08 /GEN=tef3 /DEF=translation elongation factor activity (TAS) (PMID 9099890) --- --- --- --- --- --- D82575 // Schizosaccharomyces pombe mRNA for elongation factor 3, partial cds. // gb // 11 // --- /// SPCC417.08 // |tef3|EF-3|translation elongation factor 3 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- D89226 // gb // 8 // Cross Hyb Matching Probes No No 1.39782479869449 1.55782109334586 -3.58143900149921 1.09003954640747 1.12521387646682 Max fold change at or above threshold 4 3.58143900149921 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773939_at YDR108W.S1 Subunit of TRAPP (transport protein particle), a multi-subunit complex involved in targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment; protein has late meiotic role, following DNA replication 3.57986360223777 106.230796813965 320.445770263672 GSG1 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6888 // ER to Golgi transport // inferred from mutant phenotype /// 6914 // autophagy // inferred from mutant phenotype /// 7126 // meiosis // inferred from mutant phenotype 30008 // TRAPP complex // inferred from direct assay --- 311.440185546875 86.9977798461914 125.463813781738 329.451354980469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR108W /GEN=GSG1 /DB_XREF=GI:6320313 /SEG=NC_001136:+671263,673359 /DEF=Subunit of TRAPP (transport protein particle), a multi-subunit complex involved in targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment; protein has late meiotic role, following DNA replication /NOTE=Gsg1p; go_component: TRAPP [goid GO:0030008] [evidence IDA] [pmid 10727015]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 10727015]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 8619313] --- --- --- --- --- --- S0002515 // GSG1 SGDID:S0002515, Chr IV from 671264-673360, Verified ORF // sgd // 11 // --- /// GENSCAN00000025176 // cdna:Genscan chromosome:SGD1:IV:671264:673360:1 // ensembl // 11 // --- /// GENEFINDER00000023434 // cdna:GeneFinder chromosome:SGD1:IV:671789:673360:1 // ensembl // 11 // --- /// YDR108W // cdna:known chromosome:SGD1:IV:671264:673360:1 gene:YDR108W // ensembl // 11 // --- --- No cerevisiae_gene -2.43856514875508 -3.57986360223777 -1.02073532793337 -2.48231084453298 1.05783187356496 Max fold change at or above threshold 4 3.57986360223777 Max fold change at or above threshold 0.785527131181618 -1.01164086920108 -0.703633453780703 0.929747191800167 213.338283538818 124.886713792416 0.585392887393755 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775330_at YOR233W.S1 Nonessential protein kinase with unknown cellular role 3.57877113519034 183.451721191406 582.451019287109 KIN4 --- 5737 // cytoplasm // inferred from direct assay 4672 // protein kinase activity // inferred from sequence similarity 551.35595703125 212.840515136719 154.062927246094 613.546081542969 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR233W /GEN=KIN4 /DB_XREF=GI:6324807 /SEG=NC_001147:+775846,778248 /DEF=protein kinase /NOTE=Kin4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 8465601]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-69 /// hanks // 2.2.3 // CaMK Group; CaMK II KIN1/SNF1/Nim1; kin1+ // 1.0E-76 scop // a.4.5.GntR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; GntR-like transcriptional regulators // 8.80000019073486 --- S0005759 // KIN4 SGDID:S0005759, Chr XV from 775846-778248, Verified ORF // sgd // 11 // --- /// GENSCAN00000017657 // cdna:Genscan chromosome:SGD1:XV:775846:778248:1 // ensembl // 11 // --- /// GENEFINDER00000022638 // cdna:GeneFinder chromosome:SGD1:XV:775846:778248:1 // ensembl // 11 // --- /// YOR233W // cdna:known chromosome:SGD1:XV:775846:778248:1 gene:YOR233W // ensembl // 11 // --- --- No cerevisiae_gene -1.43322105127547 -2.59046524425617 -1.25876952549654 -3.57877113519034 1.11279487184029 Max fold change at or above threshold 4 3.57877113519034 Max fold change at or above threshold 0.722778342479394 -0.730101502761516 -0.982369973352502 0.989693133634623 382.951370239258 232.996171709162 0.608422347630175 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771348_at YLR040C.S1 Hypothetical protein 3.57847035929798 75.432674407959 242.77001953125 --- --- 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 244.609848022461 68.3559799194336 82.5093688964844 240.930191040039 0.000244141003349796 0.0107421996071935 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR040C /GEN=RIC1 /DB_XREF=GI:6323070 /SEG=NC_001144:-228909,229583 /DEF=Hypothetical ORF /NOTE=Ylr040cp; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004030 // YLR040C SGDID:S0004030, Chr XII from 229583-228909, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000024836 // cdna:GeneFinder chromosome:SGD1:XII:228909:229583:-1 // ensembl // 11 // --- /// YLR040C // cdna:known chromosome:SGD1:XII:228909:229583:-1 gene:YLR040C // ensembl // 11 // --- GENSCAN00000017852 // ensembl // 1 // Negative Strand Matching Probes /// YLR041W // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene -1.28071083391461 -3.57847035929798 -1.16648293420093 -2.96463118423978 -1.01527271018438 Max fold change at or above threshold 4 3.57847035929798 Max fold change at or above threshold 0.883383768707977 -0.937485552319722 -0.791267644853323 0.845369428465067 159.101346969604 96.7965499048277 0.608395540003317 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1771245_at SPBC12D12.08c.S1 --- 3.57793124367241 --- --- --- --- 2.0839250087738 1.25826978683472 0.58243852853775 6.02863168716431 0.601073980331421 0.919434010982513 0.953857004642487 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12D12.08c /GEN=ubl1 /DEF=ubiquitin family protein --- --- --- --- --- --- AJ003818 // Schizosaccharomyces pombe mRNA for ubiquitin-like protein. // gb // 11 // --- /// SPBC12D12.08c // |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like modifier Ned8|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.59151201120098 -1.65618298283716 -3.37745744422902 -3.57793124367241 2.89292160791889 Max fold change at or above threshold 1 3.57793124367241 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773124_at YDR179W-A.S1 Hypothetical protein 3.57780252478188 105.381141662598 330.766693115234 --- --- --- --- 297.374481201172 127.645767211914 83.1165161132813 364.158905029297 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR179W-A /GEN=CSN9 /DB_XREF=GI:6320385 /SEG=NC_001136:+820011,820817 /DEF=Hypothetical ORF /NOTE=Ydr179w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002587 // YDR179W-A SGDID:S0002587, Chr IV from 819428-820819, Uncharacterized ORF // sgd // 11 // --- /// YDR179W-A // cdna:known chromosome:SGD1:IV:819428:820819:1 gene:YDR179W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.04234354063224 -2.32968540748773 -1.07032732505135 -3.57780252478188 1.22458021131593 Max fold change at or above threshold 4 3.57780252478188 Max fold change at or above threshold 0.590961237341241 -0.67388589626675 -1.00572541999861 1.08865007892412 218.073917388916 134.18911224877 0.615337743529665 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769308_at YKR009C.S1 Multifunctional enzyme of the peroxisomal fatty acid beta-oxidation pathway; has 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase activities 3.57527889758242 3317.46484375 1118.94860839844 FOX2 6635 // fatty acid beta-oxidation // traceable author statement 5782 // peroxisomal matrix // traceable author statement 3857 // 3-hydroxyacyl-CoA dehydrogenase activity // traceable author statement /// 4300 // enoyl-CoA hydratase activity // traceable author statement 1073.66125488281 3838.63842773438 2796.29125976563 1164.23596191406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR009C /GEN=FOX2 /DB_XREF=GI:6322861 /SEG=NC_001143:-453995,456697 /DEF=Multifunctional enzyme of the peroxisomal fatty acid beta-oxidation pathway; has 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase activities /NOTE=Fox2p; go_component: peroxisomal matrix [goid GO:0005782] [evidence TAS]; go_function: 3-hydroxyacyl-CoA dehydrogenase activity [goid GO:0003857] [evidence TAS]; go_function: enoyl-CoA hydratase activity [goid GO:0004300] [evidence TAS]; go_process: fatty acid beta-oxidation [goid GO:0006635] [evidence TAS] --- --- --- --- --- --- S0001717 // FOX2 SGDID:S0001717, Chr XI from 456697-453995, reverse complement, Verified ORF // sgd // 11 // --- /// M86456 // S.cerevisiae multifunctional beta-oxidation protein (FOX2) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000018425 // cdna:Genscan chromosome:SGD1:XI:453836:456697:-1 // ensembl // 11 // --- /// GENEFINDER00000022953 // cdna:GeneFinder chromosome:SGD1:XI:453891:456697:-1 // ensembl // 10 // --- /// YKR009C // cdna:known chromosome:SGD1:XI:453995:456697:-1 gene:YKR009C // ensembl // 11 // --- --- No cerevisiae_gene -2.64660710463927 3.57527889758242 1.80297695406241 2.60444460210202 1.08436059941563 Max fold change at or above threshold 4 3.57527889758242 Max fold change at or above threshold -0.854612957738007 1.20994924555219 0.431646051289114 -0.786982339103297 2218.20672607422 1339.25592963251 0.603756139538323 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771780_at SPBC4B4.01c.S1 --- 3.57502024898244 --- --- --- --- 9.5036678314209 5.88257074356079 7.11245822906494 5.50139951705933 0.0375977009534836 0.149657994508743 0.0461426004767418 0.111571997404099 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4B4.01c /DEF=pantothenate kinase (ISS) --- --- --- --- --- --- SPBC4B4.01c // |||pantothenate kinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.82034906294289 -1.61556371282468 -3.57502024898244 -1.33620016108978 -1.72750003011977 Max fold change at or above threshold 4 3.57502024898244 Max fold change at or above threshold PAAAPA No 4 0 PAPA 2 2 0 No No 1 < x = 2
1774897_at SPBC405.01.S1 --- 3.5741265325557 --- --- --- --- 1.53171563148499 4.30352830886841 5.4745454788208 4.16057777404785 0.334473013877869 0.0952147990465164 0.274170011281967 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC405.01 /GEN=ade1 /DEF=phosphoribosylamine-glycine ligase (PMID 3502942) --- --- --- --- --- --- SPBC405.01 // |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine ligase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.10104240326962 2.80961310337753 2.49440071501496 3.5741265325557 2.71628603150978 Max fold change at or above threshold 3 3.5741265325557 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773949_at YDL101C.S1 Cell-cycle checkpoint serine-threonine kinase required for DNA damage-induced transcription of certain target genes, phosphorylation of Rad55p and Sml1p, and transient G2/M arrest after DNA damage; also regulates postreplicative DNA repair 3.57074921013207 174.282234191895 698.944671630859 DUN1 75 // cell cycle checkpoint // inferred from mutant phenotype /// 77 // DNA damage checkpoint // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from direct assay 5634 // nucleus // inferred from direct assay 4672 // protein kinase activity // inferred from direct assay 615.907653808594 172.486953735352 176.077514648438 781.981689453125 0.00195312988944352 0.00292969006113708 0.00195312988944352 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL101C /GEN=DUN1 /DB_XREF=GI:6320102 /SEG=NC_001136:-280307,281848 /DEF=Cell-cycle checkpoint serine-threonine kinase required for DNA damage-induced transcription of certain target genes, phosphorylation of Rad55p and Sml1p, and transient G2/M arrest after DNA damage; also regulates postreplicative DNA repair /NOTE=Dun1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: protein kinase activity [goid GO:0004672] [evidence IDA] [pmid 11904430]; go_process: DNA damage response, signal transduction resulting in cell cycle arrest [goid GO:0000077] [evidence IMP] [pmid 11904430]; go_process: cell cycle checkpoint [goid GO:0000075] [evidence IMP] [pmid 11904430]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 11904430] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 4.0E-66 /// hanks // 2.1.9 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DUN1 // 1.0E-153 --- --- S0002259 // DUN1 SGDID:S0002259, Chr IV from 281848-280307, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023425 // cdna:GeneFinder chromosome:SGD1:IV:280307:281848:-1 // ensembl // 11 // --- /// GENSCAN00000025024 // cdna:Genscan chromosome:SGD1:IV:280307:281848:-1 // ensembl // 11 // --- /// YDL101C // cdna:known chromosome:SGD1:IV:280307:281848:-1 gene:YDL101C // ensembl // 11 // --- --- No cerevisiae_gene -1.21334329640109 -3.57074921013207 1.18689021964158 -3.49793473083907 1.26964112983104 Max fold change at or above threshold 4 3.57074921013207 Max fold change at or above threshold 0.577600157764504 -0.850889247005349 -0.8393221771309 1.11261126637174 436.613452911377 310.412312889841 0.710954531565586 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772151_at SPAC513.07.S1 --- 3.57073857527391 --- --- --- --- 3.65219259262085 1.02281153202057 1.25482153892517 1.11225473880768 0.567627012729645 0.981445014476776 0.969726979732513 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC513.07 /DEF=cinnamoyl-CoA reductase (predicted) --- --- --- --- --- --- SPAC513.07 // |||cinnamoyl-CoA reductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.3450946463308 -3.57073857527391 -1.10505148366074 -2.91052749680179 -3.28359364558514 Max fold change at or above threshold 1 3.57073857527391 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778345_at YMR163C.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 3.56983723722047 116.37771987915 429.061645507813 --- --- 5737 // cytoplasm // inferred from direct assay --- 403.879943847656 113.136795043945 119.618644714355 454.243347167969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR163C /GEN=DNF3 /DB_XREF=GI:6323815 /SEG=NC_001145:-584270,586387 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ymr163cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004773 // YMR163C SGDID:S0004773, Chr XIII from 586387-584270, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018849 // cdna:Genscan chromosome:SGD1:XIII:584270:584962:-1 // ensembl // 11 // --- /// GENEFINDER00000022018 // cdna:GeneFinder chromosome:SGD1:XIII:584270:584962:-1 // ensembl // 11 // --- /// YMR163C // cdna:known chromosome:SGD1:XIII:584270:586387:-1 gene:YMR163C // ensembl // 11 // --- --- No cerevisiae_gene -1.84283679892635 -3.56983723722047 -1.09239877760777 -3.3763962533776 1.12469894602964 Max fold change at or above threshold 4 3.56983723722047 Max fold change at or above threshold 0.721793030811951 -0.878206669677825 -0.842536155775956 0.998949794641831 272.719682693481 181.714502018164 0.666305050752053 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776795_at SPAC23H3.15c.S1 --- 3.5697306688109 --- --- --- --- 3.79262948036194 3.09563899040222 13.5386657714844 6.97495269775391 0.366210997104645 0.466064006090164 0.0676269978284836 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H3.15c /DEF=serine-rich protein --- --- --- --- --- --- SPAC23H3.15c // ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- D89241 // gb // 8 // Cross Hyb Matching Probes No No -1.6132644653034 -1.22515238117903 1.52732020191054 3.5697306688109 1.83908096845998 Max fold change at or above threshold 4 3.5697306688109 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779047_at SPAC17A2.09c.S1 --- 3.56922762801763 --- --- --- --- 4.66143751144409 16.637731552124 7.6754322052002 2.8842442035675 0.219482004642487 0.00415039015933871 0.0676269978284836 0.171387001872063 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A2.09c /GEN=csx1 /DEF=RNA-binding protein --- --- --- --- --- --- SPAC17A2.09c // |csx1||RNA-binding protein Csx1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.57254973064623 3.56922762801763 3.09367318678488 1.64658052078497 -1.61617296679608 Max fold change at or above threshold 4 3.56922762801763 Max fold change at or above threshold AAPPAA No 3 0 APAA 3 1 0 No No x = 1
1770542_at YJL158C.S1 Mannose-containing glycoprotein constituent of the cell wall; member of the PIR (proteins with internal repeats) family 3.56890115314984 1909.55853271484 840.345306396484 CIS3 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5576 // extracellular region // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay 5199 // structural constituent of cell wall // inferred from sequence similarity 803.765075683594 1642.75231933594 2176.36474609375 876.925537109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL158C /GEN=CIS3 /DB_XREF=GI:6322303 /SEG=NC_001142:-122182,122865 /DEF=cik1 suppressor /NOTE=Cis3p; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 10438739]; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10438739]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11914276]; go_component: extracellular [goid GO:0005576] [evidence IDA] [pmid 12702350]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 11914276]; go_function: structural constituent of cell wall [goid GO:0005199] [evidence ISS] [pmid 10438739]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 10407261] --- --- --- --- --- --- S0003694 // CIS3 SGDID:S0003694, Chr X from 122865-122182, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024018 // cdna:Genscan chromosome:SGD1:X:122182:122865:-1 // ensembl // 11 // --- /// GENEFINDER00000024438 // cdna:GeneFinder chromosome:SGD1:X:122182:122865:-1 // ensembl // 11 // --- /// YJL158C // cdna:known chromosome:SGD1:X:122182:122865:-1 gene:YJL158C // ensembl // 11 // --- --- No cerevisiae_gene 3.56890115314984 2.04382147101725 -1.08178581212877 2.70771250448121 1.09102219496606 Max fold change at or above threshold 4 3.56890115314984 Max fold change at or above threshold -0.871638377846122 0.408666811141226 1.22296615127429 -0.759994584569391 1374.95191955566 655.302541041747 0.476600331779978 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779289_at YBL074C.S1 Component of the U5 snRNP, required for splicing of U3 precursors; originally described as a splicing factor specifically required for splicing pre-mRNA of the MATa1 cistron 3.56553343235 101.815635681152 34.7617702484131 AAR2 244 // assembly of spliceosomal tri-snRNP // inferred from direct assay 5682 // snRNP U5 // inferred from direct assay /// 5682 // snRNP U5 // inferred from physical interaction --- 32.713550567627 86.9900131225586 116.641258239746 36.8099899291992 0.00415039015933871 0.00122069998178631 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL074C /GEN=AAR2 /DB_XREF=GI:6319398 /SEG=NC_001134:-86720,87787 /DEF=Component of the U5 snRNP, required for splicing of U3 precursors; originally described as a splicing factor specifically required for splicing pre-mRNA of the MATa1 cistron /NOTE=Aar2p; go_component: snRNP U5 [goid GO:0005682] [evidence IDA,IPI] [pmid 11720285]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: assembly of spliceosomal tri-snRNP [goid GO:0000244] [evidence IDA] [pmid 11720285] --- --- --- --- --- --- S0000170 // AAR2 SGDID:S0000170, Chr II from 87787-86720, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021082 // cdna:Genscan chromosome:SGD1:II:86720:87787:-1 // ensembl // 11 // --- /// YBL074C // cdna:known chromosome:SGD1:II:86720:87787:-1 gene:YBL074C // ensembl // 11 // --- --- No cerevisiae_gene 3.23092738857098 2.65914312611005 2.20999337543777 3.56553343235 1.1252214843847 Max fold change at or above threshold 4 3.56553343235 Max fold change at or above threshold -0.876312419119183 0.460663953371257 1.19105448124475 -0.775406015496821 68.2887029647827 40.5964261386525 0.59448231370844 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777574_at SPAC824.02.S1 --- 3.56543724508196 --- --- --- --- 3.34763979911804 4.53857946395874 1.66406059265137 4.67427062988281 0.725830018520355 0.533936023712158 0.601073980331421 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC824.02 /DEF=esteraselipase --- --- --- --- --- --- SPAC824.02 // |||GPI inositol deacylase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.56543724508196 1.35575502034432 -2.0064701106951 -2.01172950907047 1.39628840328469 Max fold change at or above threshold 3 3.56543724508196 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-J01347-1_s_at AFFX-Sc-J01347-1 --- 3.56276891792218 --- --- --- --- 207.702026367188 739.994323730469 260.05615234375 230.112976074219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL J01347 /FEA=CDS_1 /DB_XREF=AAB59340.1 GI:172191 /NOTE=recombinase (FLP) --- --- --- --- --- --- AFFX-Sc-J01347-1 // --- // affx // --- // --- --- No No 1.76884768982571 3.56276891792218 1.09403811060273 1.25206362639914 1.1078995236542 Max fold change at or above threshold 4 3.56276891792218 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774388_at SPBC15D4.08c.S1 --- 3.56244860836252 --- --- --- --- 9.76440811157227 3.25267457962036 9.53652572631836 2.74092602729797 0.0561522990465164 0.366210997104645 0.149657994508743 0.171387001872063 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC15D4.08c /DEF=dubious --- --- --- --- --- --- SPBC15D4.08c // |||dubious|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.62633256014881 -3.00196280708534 -1.72203946165096 -1.02389574482298 -3.56244860836252 Max fold change at or above threshold 4 3.56244860836252 Max fold change at or above threshold MAAMAA No 4 0 MAAA 3 0 1 No No x = 1
1771322_at SPCC1450.04.S1 --- 3.56110282728882 --- --- --- --- 1.23055553436279 1.46163070201874 1.27603614330292 0.941671431064606 0.665526986122131 0.850341975688934 0.919434010982513 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1450.04 /GEN=tef5 /DEF=translation elongation factor 1 (beta subunit) (PMID 9099890) --- --- --- --- --- --- D82574 // Schizosaccharomyces pombe mRNA for elongation factor 1 beta, partial cds. // gb // 10 // --- /// AB016046 // Schizosaccharomyces pombe mRNA for elongation factor 1 beta, complete cds. // gb // 11 // --- /// SPCC1450.04 // |tef5||translation elongation factor 1 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.4964613491212 1.18778117785281 -3.56110282728882 1.03695941196484 -1.30677802656877 Max fold change at or above threshold 0 3.56110282728882 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769744_at SPAC9G1.06c.S1 --- 3.55774861270149 --- --- --- --- 4.57424688339233 3.63288903236389 5.35535049438477 3.3054039478302 0.366210997104645 0.457763671875 0.274170011281967 0.39013671875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9G1.06c /GEN=cyk3 /DEF=src (SH3) homology domain --- --- --- --- --- --- SPAC9G1.06c // |cyk3||src |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.49849237315425 -1.25912100332333 -3.55774861270149 1.17076113968146 -1.3838692503514 Max fold change at or above threshold 4 3.55774861270149 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778305_at YDR301W.S1 RNA-binding subunit of the mRNA cleavage and polyadenylation factor; involved in poly(A) site recognition and required for both pre-mRNA cleavage and polyadenylation, 51% sequence similarity with mammalian AAUAA-binding subunit of CPSF 3.55717065180653 305.773193359375 964.802642822266 CFT1 6369 // transcription termination from RNA polymerase II promoter // inferred from mutant phenotype /// 6378 // mRNA polyadenylylation // inferred from direct assay /// 6378 // mRNA polyadenylylation // traceable author statement /// 6379 // mRNA cleavage // inferred from direct assay /// 6379 // mRNA cleavage // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from physical interaction /// 5849 // mRNA cleavage factor complex // inferred from physical interaction 3723 // RNA binding // inferred from direct assay 901.870422363281 253.535888671875 358.010498046875 1027.73486328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR301W /GEN=CFT1 /DB_XREF=GI:6320507 /SEG=NC_001136:+1063344,1067417 /DEF=Functions in cleavage of 3'-ends of pre-mRNAs, prior to polyadenylation; 23.5% identical to the 160-kDa subunit of mammalian cleavage and polyadenylation specificity factor (CPSF-160) /NOTE=Cft1p; go_component: mRNA cleavage and polyadenylation specificity factor complex [goid GO:0005847] [evidence TAS] [pmid 11344258]; go_component: mRNA cleavage factor complex [goid GO:0005849] [evidence IPI] [pmid 9099738]; go_function: cleavage/polyadenylation specificity factor activity [goid GO:0030364] [evidence IPI,TAS] [pmid 11344258]; go_process: mRNA cleavage [goid GO:0006379] [evidence IDA,TAS] [pmid 11344258]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IDA,TAS] [pmid 11344258]; go_process: transcription termination from Pol II promoter [goid GO:0006369] [evidence IMP] [pmid 12145212] --- --- --- --- --- --- S0002709 // CFT1 SGDID:S0002709, Chr IV from 1063346-1067419, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023561 // cdna:GeneFinder chromosome:SGD1:IV:1063346:1067419:1 // ensembl // 11 // --- /// GENSCAN00000025332 // cdna:Genscan chromosome:SGD1:IV:1063346:1067419:1 // ensembl // 11 // --- /// YDR301W // cdna:known chromosome:SGD1:IV:1063346:1067419:1 gene:YDR301W // ensembl // 11 // --- --- No cerevisiae_gene -1.72701677525405 -3.55717065180653 -1.1227117415496 -2.51911725293932 1.13955934000824 Max fold change at or above threshold 4 3.55717065180653 Max fold change at or above threshold 0.690080235256929 -0.988210126505479 -0.717765285375957 1.01589517662451 635.28791809082 386.306534591891 0.60808103474221 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778690_at SPAC17G8.06c.S1 --- 3.55488108460256 --- --- --- --- 1.03843510150909 1.34938549995422 1.91948521137238 1.08316361904144 0.5927734375 0.633789002895355 0.567627012729645 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G8.06c /DEF=dihydroxy-acid dehydratase --- --- --- --- --- --- D89254 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1644. // gb // 10 // --- /// SPAC17G8.06c // |||dihydroxy-acid dehydratase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 3.55488108460256 1.2994413401408 -1.04790787435367 1.84844022373946 1.04307300231603 Max fold change at or above threshold 0 3.55488108460256 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777428_at SPAC27F1.04c.S1 --- 3.55480002709149 --- --- --- --- 4.09820556640625 6.38555192947388 3.37532472610474 1.15286529064178 0.725830018520355 0.24609400331974 0.0461426004767418 0.567627012729645 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27F1.04c /GEN=nuf2 /DEF=localization spindle pole body --- --- --- --- --- --- SPAC27F1.04c // |nuf2||spindle pole body protein Nuf2|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.11881933933951 1.55813363336808 -3.22468581153776 -1.21416630960297 -3.55480002709149 Max fold change at or above threshold 3 3.55480002709149 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1769897_at SPBC691.04.S1 --- 3.5536396576066 --- --- --- --- 1.11560523509979 2.07927656173706 1.11258125305176 0.941997230052948 0.780517995357513 0.828612983226776 0.805419981479645 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC691.04 /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPBC691.04 // |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.13675807692056 1.8638103303191 -3.5536396576066 -1.00271798759842 -1.18429778719953 Max fold change at or above threshold 0 3.5536396576066 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771791_s_at YBL101W-A.S1 TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// Identified by expression profiling and mass spectrometry /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition 3.55345104588563 1524.47515869141 481.940628051758 --- 6319 // Ty element transposition // inferred from sequence similarity 943 // retrotransposon nucleocapsid // inferred from sequence similarity 3723 // RNA binding // inferred from sequence similarity /// 3887 // DNA-directed DNA polymerase activity // inferred from sequence similarity /// 3964 // RNA-directed DNA polymerase activity // inferred from sequence similarity /// 4540 // ribonuclease activity // inferred from sequence similarity /// 5515 // protein binding // inferred from sequence similarity /// 8233 // peptidase activity // inferred from sequence similarity 450.047821044922 1599.22290039063 1449.72741699219 513.833435058594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL101W-A /GEN=ECM21 /DB_XREF=GI:6319368 /SEG=NC_001134:+29932,31248 /DEF=TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /NOTE=Ybl101w-ap; go_component: retrotransposon nucleocapsid [goid GO:0000943] [evidence ISS] [pmid 9582191]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 9582191]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 9582191]; go_process: Ty element transposition [goid GO:0006319] [evidence ISS] [pmid 9582191] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.5 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.80000019073486 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.90000009536743 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 7.59999990463257 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 7.80000019073486 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.39999961853027 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.5 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.69999980926514 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.89999961853027 --- S0002148 // YBL101W-A SGDID:S0002148, Chr II from 29932-31248, Ty ORF // sgd // 11 // --- /// S0002149 // YBL101W-B SGDID:S0002149, Chr II from 29932-31224,31226-35245, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0000524 // YCL019W SGDID:S0000524, Chr III from 85101-86390,86392-90414, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0000525 // YCL020W SGDID:S0000525, Chr III from 85101-86417, Ty ORF // sgd // 11 // --- /// S0007344 // YDR034C-C SGDID:S0007344, Chr IV from 519352-518036, reverse complement, Ty ORF // sgd // 11 // --- /// S0007345 // YDR034C-D SGDID:S0007345, Chr IV from 519352-518060,518058-514039, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007392 // YDR210W-A SGDID:S0007392, Chr IV from 872107-873423, Ty ORF // sgd // 11 // --- /// S0007393 // YDR210W-B SGDID:S0007393, Chr IV from 872107-873399,873401-877420, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007396 // YDR261W-A SGDID:S0007396, Chr IV from 981456-982772, Ty ORF // sgd // 11 // --- /// S0007397 // YDR261W-B SGDID:S0007397, Chr IV from 981456-982748,982750-986769, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0002962 // YFL002W-A SGDID:S0002962, Chr VI from 138199-139491,139493-143512, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007404 // YFL002W-B SGDID:S0007404, Chr VI from 138199-139515, Ty ORF // sgd // 11 // --- /// S0007369 // YGR161W-A SGDID:S0007369, Chr VII from 811743-813059, Ty ORF // sgd // 11 // --- /// S0007370 // YGR161W-B SGDID:S0007370, Chr VII from 811743-813035,813037-817056, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007379 // YLR410W-A SGDID:S0007379, Chr XII from 941480-942796, Ty ORF // sgd // 11 // --- /// S0007380 // YLR410W-B SGDID:S0007380, Chr XII from 941480-942772,942774-946793, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007353 // YOR192C-A SGDID:S0007353, Chr XV from 709732-708416, reverse complement, Ty ORF // sgd // 11 // --- /// S0007354 // YOR192C-B SGDID:S0007354, Chr XV from 709732-708440,708438-704419, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007355 // YOR343W-A SGDID:S0007355, Chr XV from 970573-971889, Ty ORF // sgd // 11 // --- /// S0007356 // YOR343W-B SGDID:S0007356, Chr XV from 970573-971866,971868-975886, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// GENSCAN00000021059 // cdna:Genscan chromosome:SGD1:II:29932:31248:1 // ensembl // 11 // --- /// GENEFINDER00000022127 // cdna:GeneFinder chromosome:SGD1:II:29932:31248:1 // ensembl // 11 // --- /// GENSCAN00000022449 // cdna:Genscan chromosome:SGD1:III:85101:86417:1 // ensembl // 11 // --- /// GENEFINDER00000023376 // cdna:GeneFinder chromosome:SGD1:III:85101:86417:1 // ensembl // 11 // --- /// GENEFINDER00000023930 // cdna:GeneFinder chromosome:SGD1:IV:518036:519352:-1 // ensembl // 11 // --- /// GENSCAN00000025122 // cdna:Genscan chromosome:SGD1:IV:518036:519352:-1 // ensembl // 11 // --- /// GENEFINDER00000023803 // cdna:GeneFinder chromosome:SGD1:IV:872107:873423:1 // ensembl // 11 // --- /// GENSCAN00000025257 // cdna:Genscan chromosome:SGD1:IV:872107:873423:1 // ensembl // 11 // --- /// GENEFINDER00000023453 // cdna:GeneFinder chromosome:SGD1:IV:981456:982772:1 // ensembl // 11 // --- /// GENSCAN00000025302 // cdna:Genscan chromosome:SGD1:IV:981456:982772:1 // ensembl // 11 // --- /// GENEFINDER00000018523 // cdna:GeneFinder chromosome:SGD1:VI:138199:139515:1 // ensembl // 11 // --- /// GENSCAN00000023240 // cdna:Genscan chromosome:SGD1:VI:138199:139515:1 // ensembl // 11 // --- /// GENSCAN00000019372 // cdna:Genscan chromosome:SGD1:VII:573097:574143:-1 // ensembl // 11 // --- /// GENEFINDER00000021662 // cdna:GeneFinder chromosome:SGD1:VII:573097:574143:-1 // ensembl // 11 // --- /// GENSCAN00000019464 // cdna:Genscan chromosome:SGD1:VII:811743:813059:1 // ensembl // 11 // --- /// GENEFINDER00000021696 // cdna:GeneFinder chromosome:SGD1:VII:811743:813059:1 // ensembl // 11 // --- /// GENSCAN00000018128 // cdna:Genscan chromosome:SGD1:XII:941480:942796:1 // ensembl // 11 // --- /// GENEFINDER00000024889 // cdna:GeneFinder chromosome:SGD1:XII:941480:942796:1 // ensembl // 11 // --- /// GENSCAN00000018141 // cdna:Genscan chromosome:SGD1:XII:980089:981405:-1 // ensembl // 9 // --- /// GENEFINDER00000024670 // cdna:GeneFinder chromosome:SGD1:XII:980089:981405:-1 // ensembl // 9 // --- /// GENSCAN00000020008 // cdna:Genscan chromosome:SGD1:XIV:566383:567816:-1 // ensembl // 11 // --- /// GENEFINDER00000020499 // cdna:GeneFinder chromosome:SGD1:XIV:566383:567819:-1 // ensembl // 11 // --- /// GENSCAN00000017611 // cdna:Genscan chromosome:SGD1:XV:708416:709732:-1 // ensembl // 11 // --- /// GENEFINDER00000022693 // cdna:GeneFinder chromosome:SGD1:XV:708416:709732:-1 // ensembl // 11 // --- /// GENSCAN00000017795 // cdna:Genscan chromosome:SGD1:XV:970573:971889:1 // ensembl // 11 // --- /// GENEFINDER00000022869 // cdna:GeneFinder chromosome:SGD1:XV:970573:971889:1 // ensembl // 11 // --- /// YBL101W-A // cdna:known chromosome:SGD1:II:29932:31248:1 gene:YBL101W-A // ensembl // 11 // --- /// YBL101W-B // cdna:known chromosome:SGD1:II:29932:35245:1 gene:YBL101W-B // ensembl // 11 // --- /// YCL019W // cdna:known chromosome:SGD1:III:85101:90414:1 gene:YCL019W // ensembl // 11 // --- /// YCL020W // cdna:known chromosome:SGD1:III:85101:86417:1 gene:YCL020W // ensembl // 11 // --- /// YDR034C-D // cdna:known chromosome:SGD1:IV:514039:519352:-1 gene:YDR034C-D // ensembl // 11 // --- /// YDR034C-C // cdna:known chromosome:SGD1:IV:518036:519352:-1 gene:YDR034C-C // ensembl // 11 // --- /// YDR210W-B // cdna:known chromosome:SGD1:IV:872107:877420:1 gene:YDR210W-B // ensembl // 11 // --- /// YDR210W-A // cdna:known chromosome:SGD1:IV:872107:873423:1 gene:YDR210W-A // ensembl // 11 // --- /// YDR261W-A // cdna:known chromosome:SGD1:IV:981456:982772:1 gene:YDR261W-A // ensembl // 11 // --- /// YDR261W-B // cdna:known chromosome:SGD1:IV:981456:986769:1 gene:YDR261W-B // ensembl // 11 // --- /// YFL002W-A // cdna:known chromosome:SGD1:VI:138199:143512:1 gene:YFL002W-A // ensembl // 11 // --- /// YFL002W-B // cdna:known chromosome:SGD1:VI:138199:139515:1 gene:YFL002W-B // ensembl // 11 // --- /// YGR161W-A // cdna:known chromosome:SGD1:VII:811743:813059:1 gene:YGR161W-A // ensembl // 11 // --- /// YGR161W-B // cdna:known chromosome:SGD1:VII:811743:817056:1 gene:YGR161W-B // ensembl // 11 // --- /// YLR410W-B // cdna:known chromosome:SGD1:XII:941480:946793:1 gene:YLR410W-B // ensembl // 11 // --- /// YLR410W-A // cdna:known chromosome:SGD1:XII:941480:942796:1 gene:YLR410W-A // ensembl // 11 // --- /// YOR192C-B // cdna:known chromosome:SGD1:XV:704419:709732:-1 gene:YOR192C-B // ensembl // 11 // --- /// YOR192C-A // cdna:known chromosome:SGD1:XV:708416:709732:-1 gene:YOR192C-A // ensembl // 11 // --- /// YOR343W-B // cdna:known chromosome:SGD1:XV:970573:975886:1 gene:YOR343W-B // ensembl // 11 // --- /// YOR343W-A // cdna:known chromosome:SGD1:XV:970573:971889:1 gene:YOR343W-A // ensembl // 11 // --- --- No cerevisiae_gene 2.91899617058653 3.55345104588563 1.80481661325189 3.22127416065743 1.14173074733608 Max fold change at or above threshold 4 3.55345104588563 Max fold change at or above threshold -0.913477670896878 0.984247467720026 0.737373564818799 -0.808143361641947 1003.20789337158 605.554016206605 0.603617675067786 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777667_s_at YEL070W.S1 Hypothetical protein /// --- 3.55290769022826 1804.24920654297 5573.4091796875 --- --- --- 46029 // mannitol dehydrogenase activity // inferred from sequence similarity 6147.95458984375 1730.40087890625 1878.09753417969 4998.86376953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL070W /GEN=DLD3 /DB_XREF=GI:6320765 /SEG=NC_001137:+19589,21097 /DEF=Hypothetical ORF /NOTE=Yel070wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000796 // YEL070W SGDID:S0000796, Chr V from 19589-21097, Uncharacterized ORF // sgd // 11 // --- /// S0005356 // YNR073C SGDID:S0005356, Chr XIV from 776298-774790, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016748 // cdna:Genscan chromosome:SGD1:V:19589:21097:1 // ensembl // 11 // --- /// GENEFINDER00000019571 // cdna:GeneFinder chromosome:SGD1:V:19589:21097:1 // ensembl // 11 // --- /// GENSCAN00000020099 // cdna:Genscan chromosome:SGD1:XIV:774790:776298:-1 // ensembl // 11 // --- /// GENEFINDER00000020441 // cdna:GeneFinder chromosome:SGD1:XIV:774790:776298:-1 // ensembl // 11 // --- /// YEL070W // cdna:known chromosome:SGD1:V:19589:21097:1 gene:YEL070W // ensembl // 11 // --- /// YNR073C // cdna:known chromosome:SGD1:XIV:774790:776298:-1 gene:YNR073C // ensembl // 11 // --- --- No cerevisiae_gene -2.13412229064293 -3.55290769022826 -1.16321109542221 -3.27350123087673 -1.22987040121324 Max fold change at or above threshold 4 3.55290769022826 Max fold change at or above threshold 1.10426602803187 -0.879428864666168 -0.813105935754383 0.588268772388685 3688.82919311523 2226.93203838881 0.603696165315845 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777008_at SPAC1805.17.S1 --- 3.55212652068882 --- --- --- --- 4.90825748443604 8.28174591064453 2.20850229263306 4.27652978897095 0.432372987270355 0.111571997404099 0.432372987270355 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1805.17 /GEN=crm1 /DEF=chromosome region maintenance protein 1 --- --- --- --- --- --- SPAC1805.17 // |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.55212652068882 1.68730877239137 -2.07002982564136 -2.22243712438452 -1.14771969953168 Max fold change at or above threshold 3 3.55212652068882 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1777369_at YER118C.S1 Transmembrane osmosensor, participates in activation of both the Cdc42p- and MAP kinase-dependent filamentous growth pathway and the high-osmolarity glycerol response pathway 3.55153053675858 115.804698944092 398.41487121582 SHO1 7124 // pseudohyphal growth // inferred from mutant phenotype /// 7232 // osmosensory signaling pathway via Sho1 osmosensor // traceable author statement 5886 // plasma membrane // inferred from sequence similarity /// 43332 // mating projection tip // inferred from direct assay 5034 // osmosensor activity // traceable author statement 365.362701416016 102.874717712402 128.734680175781 431.467041015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER118C /GEN=SHO1 /DB_XREF=GI:6320964 /SEG=NC_001137:-397948,399051 /DEF=Transmembrane osmosensor, member of one of several pathways for activation of the high-osmolarity glycerol response MAP kinase cascade; more important at high osmolarity than at moderate osmolarity /NOTE=Sho1p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 7624781]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 12374868]; go_function: osmosensor activity [goid GO:0005034] [evidence TAS] [pmid 9180081]; go_process: osmosensory signaling pathway via Sho1 osmosensor [goid GO:0007232] [evidence TAS] [pmid 7624781]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 9744864] --- --- --- --- --- S0000920 // span:33-55,65-84,91-108,123-145 // numtm:4 S0000920 // SHO1 SGDID:S0000920, Chr V from 399051-397948, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016899 // cdna:Genscan chromosome:SGD1:V:397948:399051:-1 // ensembl // 11 // --- /// GENEFINDER00000019669 // cdna:GeneFinder chromosome:SGD1:V:397948:399003:-1 // ensembl // 11 // --- /// YER118C // cdna:known chromosome:SGD1:V:397948:399051:-1 gene:YER118C // ensembl // 11 // --- --- No cerevisiae_gene 1.57348074143401 -3.55153053675858 -1.13251193884767 -2.83810625790292 1.18092799112611 Max fold change at or above threshold 4 3.55153053675858 Max fold change at or above threshold 0.6532341157341 -0.930705714516372 -0.774658096729881 1.05212969551215 257.109785079956 165.718405895573 0.644543364399913 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776090_at YIR008C.S1 Subunit of DNA primase, which is required for DNA synthesis and double-strand break repair 3.54805589218581 182.826683044434 528.742828369141 PRI1 6269 // DNA replication, synthesis of RNA primer // traceable author statement /// 6270 // DNA replication initiation // traceable author statement /// 6273 // lagging strand elongation // traceable author statement 5658 // alpha DNA polymerase:primase complex // traceable author statement 3889 // alpha DNA polymerase activity // traceable author statement 503.565368652344 141.927124023438 223.72624206543 553.920288085938 0.000244141003349796 0.000244141003349796 0.000244140625 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR008C /GEN=PRI1 /DB_XREF=GI:6322198 /SEG=NC_001141:-373074,374303 /DEF=Subunit of DNA primase, which is required for DNA synthesis and double-strand break repair /NOTE=Pri1p; go_component: alpha DNA polymerase:primase complex [goid GO:0005658] [evidence TAS] [pmid 9745046]; go_function: alpha DNA polymerase activity [goid GO:0003889] [evidence TAS] [pmid 9745046]; go_process: DNA replication initiation [goid GO:0006270] [evidence TAS] [pmid 9745046]; go_process: DNA replication, synthesis of RNA primer [goid GO:0006269] [evidence TAS] [pmid 9745046]; go_process: lagging strand elongation [goid GO:0006273] [evidence TAS] [pmid 9745046] --- --- --- --- scop // a.4.1.Centromere-binding // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding // 1.10000002384186 --- S0001447 // PRI1 SGDID:S0001447, Chr IX from 374303-373074, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016483 // cdna:Genscan chromosome:SGD1:IX:373074:374303:-1 // ensembl // 11 // --- /// GENEFINDER00000019041 // cdna:GeneFinder chromosome:SGD1:IX:373074:374261:-1 // ensembl // 11 // --- /// YIR008C // cdna:known chromosome:SGD1:IX:373074:374303:-1 gene:YIR008C // ensembl // 11 // --- --- No cerevisiae_gene -1.04937573233997 -3.54805589218581 1.17098533831328 -2.25081047267166 1.09999678804036 Max fold change at or above threshold 4 3.54805589218581 Max fold change at or above threshold 0.726093596237197 -1.05075120326466 -0.648845874789527 0.973503481816994 355.784755706787 203.528324325395 0.572054651192332 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778431_at SPAC1039.04.S1 --- 3.54709499044041 --- --- --- --- 1.86634147167206 6.62009048461914 2.42794752120972 1.16320478916168 0.633789002895355 0.567627012729645 0.633789002895355 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1039.04 /DEF=membrane transporter --- --- --- --- --- --- SPAC1039.04 // |||nicotinic acid plasma membrane transporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.17187517864549 3.54709499044041 1.47678523649102 1.30091280618359 -1.60448227952803 Max fold change at or above threshold 1 3.54709499044041 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780105_at YNL237W.S1 Probable type-III integral membrane protein of unknown function, has regions of similarity to mitochondrial electron transport proteins 3.54645731410721 658.744476318359 1497.01092529297 YTP1 --- 16020 // membrane // inferred from sequence similarity --- 1528.8154296875 535.348327636719 782.140625 1465.20642089844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL237W /GEN=YTP1 /DB_XREF=GI:6324092 /SEG=NC_001146:+205187,206566 /DEF=Probable type-III integral membrane protein of unknown function, has regions of similarity to mitochondrial electron transport proteins /NOTE=Ytp1p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 8635735]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005181 // span:7-29,58-80,123-145,169-191,204-226,270-287,294-316,320-342,354-373,393-415 // numtm:10 S0005181 // YTP1 SGDID:S0005181, Chr XIV from 205187-206566, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020619 // cdna:GeneFinder chromosome:SGD1:XIV:205187:206566:1 // ensembl // 11 // --- /// YNL237W // cdna:known chromosome:SGD1:XIV:205187:206566:1 gene:YNL237W // ensembl // 11 // --- --- No cerevisiae_gene -3.54645731410721 -2.85573961991516 1.23422380097949 -1.95465544279521 -1.04341300166434 Max fold change at or above threshold 4 3.54645731410721 Max fold change at or above threshold 0.910928362825839 -1.09595042071811 -0.597411289932555 0.782433347824824 1077.87770080566 495.030945664002 0.459264483618122 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772850_at YJR008W.S1 Hypothetical protein 3.54621457319524 4371.26354980469 1463.60266113281 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1434.58044433594 5087.330078125 3655.19702148438 1492.62487792969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR008W /GEN=SUI2 /DB_XREF=GI:6322467 /SEG=NC_001142:+452344,453360 /DEF=Hypothetical ORF /NOTE=Yjr008wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003768 // YJR008W SGDID:S0003768, Chr X from 452344-453360, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024140 // cdna:Genscan chromosome:SGD1:X:452344:453360:1 // ensembl // 11 // --- /// GENEFINDER00000024427 // cdna:GeneFinder chromosome:SGD1:X:452512:453360:1 // ensembl // 11 // --- /// YJR008W // cdna:known chromosome:SGD1:X:452344:453360:1 gene:YJR008W // ensembl // 11 // --- --- No cerevisiae_gene -1.85203142474217 3.54621457319524 1.30873760847332 2.54792056863451 1.04046091233358 Max fold change at or above threshold 4 3.54621457319524 Max fold change at or above threshold -0.834095935400872 1.22055433595714 0.414987880969887 -0.801446281526153 2917.43310546875 1777.79629200584 0.60937002760178 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778169_at SPBC36.07.S1 --- 3.54407225691463 --- --- --- --- 9.73960876464844 6.65686559677124 6.10855770111084 2.74814057350159 0.00805663969367743 0.0239257998764515 0.014160200022161 0.0461426004767418 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC36.07 /DEF=RNA polymerase II (elongator subunit) (predicted) --- --- --- --- --- --- SPBC36.07 // |||RNA polymerase II |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.56235451032422 -1.46309229517454 -1.74040959114165 -1.5944203593063 -3.54407225691463 Max fold change at or above threshold 4 3.54407225691463 Max fold change at or above threshold PPPAPP No 4 0 PPPP 0 4 0 No No 3 < x
1778063_at YPL093W.S1 Putative GTPase that associates with free 60S ribosomal subunits in the nucleolus and is required for 60S ribosomal subunit biogenesis; constituent of 66S pre-ribosomal particles; member of the ODN family of nucleolar G-proteins 3.5430888798052 327.857894897461 399.014312744141 NOG1 54 // ribosome-nucleus export // inferred from mutant phenotype /// 54 // ribosome-nucleus export // inferred from physical interaction 5730 // nucleolus // inferred from direct assay 3924 // GTPase activity // inferred from sequence similarity 367.017944335938 282.627777099609 373.088012695313 431.010681152344 0.000732421991415322 0.000732421991415322 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL093W /GEN=NOG1 /DB_XREF=GI:6325164 /SEG=NC_001148:+370973,372916 /DEF=Putative GTPase that associates with free 60S ribosomal subunits in the nucleolus and is required for 60S ribosomal subunit biogenesis; member of the ODN family of nucleolar G-proteins /NOTE=Nog1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11112701]; go_function: GTPase activity [goid GO:0003924] [evidence ISS] [pmid 11112701]; go_process: ribosome-nucleus export [goid GO:0000054] [evidence IMP,IPI] [pmid 12773575] --- --- --- --- --- --- S0006014 // NOG1 SGDID:S0006014, Chr XVI from 370975-372918, Verified ORF // sgd // 11 // --- /// GENSCAN00000017118 // cdna:Genscan chromosome:SGD1:XVI:370975:372918:1 // ensembl // 11 // --- /// GENEFINDER00000020870 // cdna:GeneFinder chromosome:SGD1:XVI:370975:372918:1 // ensembl // 11 // --- /// YPL093W // cdna:known chromosome:SGD1:XVI:370975:372918:1 gene:YPL093W // ensembl // 11 // --- --- No cerevisiae_gene 3.5430888798052 -1.29859120042042 -1.53587066163047 1.01653888713904 1.17435860508726 Max fold change at or above threshold 4 3.5430888798052 Max fold change at or above threshold 0.0586156127530475 -1.32240102994376 0.157950235507481 1.10583518168323 363.436103820801 61.1072775137115 0.168137608980757 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777274_at SPAC21E11.06.S1 --- 3.54118171447885 --- --- --- --- 7.9933385848999 8.3283224105835 10.5049104690552 6.7458119392395 0.129638999700546 0.0375977009534836 0.00195312988944352 0.014160200022161 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC21E11.06 /GEN=tif224 /DEF=translation initiation factor --- --- --- --- --- --- SPAC21E11.06 // |tif224||translation initiation factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.22847406164514 1.04190787392847 -3.54118171447885 1.31420811935827 -1.18493350495049 Max fold change at or above threshold 4 3.54118171447885 Max fold change at or above threshold APPAPP No 3 0 APPP 1 3 0 No No 2 < x = 3
1772189_at SPAC18G6.01c.S1 --- 3.53991883783611 --- --- --- --- 0.292940646409988 0.952498376369476 1.0369861125946 0.808064103126526 0.99975597858429 0.753906011581421 0.753906011581421 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18G6.01c /DEF=hypothetical protein --- --- --- --- --- --- SPAC18G6.01c // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.96961754855838 3.25150636500063 -1.14791296026787 3.53991883783611 2.75845674893333 Max fold change at or above threshold 0 3.53991883783611 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779024_at SPAC343.19.S1 --- 3.53966303891431 --- --- --- --- 12.2643709182739 3.46484136581421 8.66131687164307 6.47854328155518 0.00585938012227416 0.432372987270355 0.194580003619194 0.0239257998764515 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC343.19 /DEF=phosphatidylinositol kinase (predicted) --- --- --- --- --- --- SPAC343.19 // ||SPAC824.01|phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.37035949742607 -3.53966303891431 -2.30727489621401 -1.41599379170934 -1.89307540063696 Max fold change at or above threshold 4 3.53966303891431 Max fold change at or above threshold PPAAAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1778388_at SPAC6F12.02.S1 --- 3.53863485661407 --- --- --- --- 1.58438789844513 1.0226457118988 1.9765762090683 0.534733414649963 0.567627012729645 0.533936023712158 0.601073980331421 0.74609375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F12.02 /GEN=rst2 /DEF=transcription factor --- --- --- --- --- --- D89221 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1310. // gb // 11 // --- /// SPAC6F12.02 // |rst2||transcription factor Rst2|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.11560235670712 -1.54930283284844 3.53863485661407 1.24753301322741 -2.96294911639713 Max fold change at or above threshold 0 3.53863485661407 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770837_at YGR266W.S1 probably contains a single transmembrane span 3.53772193883961 411.593338012695 1305.23345947266 --- --- 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay --- 1288.9775390625 364.352416992188 458.834259033203 1321.48937988281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR266W /GEN=MES1 /DB_XREF=GI:6321705 /SEG=NC_001139:+1022661,1024766 /DEF=probably contains a single transmembrane span /NOTE=Ygr266wp; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12469340]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003498 // YGR266W SGDID:S0003498, Chr VII from 1022662-1024767, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019546 // cdna:Genscan chromosome:SGD1:VII:1022662:1024767:1 // ensembl // 11 // --- /// GENEFINDER00000021691 // cdna:GeneFinder chromosome:SGD1:VII:1022662:1024767:1 // ensembl // 11 // --- /// YGR266W // cdna:known chromosome:SGD1:VII:1022662:1024767:1 gene:YGR266W // ensembl // 11 // --- --- No cerevisiae_gene -2.42570813637513 -3.53772193883961 1.18988950408095 -2.80924432665178 1.02522296924115 Max fold change at or above threshold 4 3.53772193883961 Max fold change at or above threshold 0.831922145408336 -0.954608694525996 -0.77205392655459 0.89474047567225 858.413398742676 517.553406525184 0.602918602253004 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771442_at YLR376C.S1 Protein of unknown function; deletion results in a mutator phenotype suggesting a role for this protein as a mutational suppressor; deletion increases sensitivity to anticancer drugs oxaliplatin and cisplatin but not mitomycin C 3.5362843652727 101.379585266113 141.15701675415 PSY3 45021 // error-free DNA repair // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 124.313575744629 114.640853881836 88.1183166503906 158.000457763672 0.000244141003349796 0.000732421991415322 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR376C /GEN=PSY3 /DB_XREF=GI:6323408 /SEG=NC_001144:-872825,873553 /DEF=Protein of unknown function; deletion results in sensitivity to anticancer drugs oxaliplatin and cisplatin /NOTE=Psy3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004368 // span:89-111 // numtm:1 S0004368 // PSY3 SGDID:S0004368, Chr XII from 873553-872825, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YLR376C // cdna:known chromosome:SGD1:XII:872825:873553:-1 gene:YLR376C // ensembl // 11 // --- --- No cerevisiae_gene 3.5362843652727 -1.08437412611008 -1.52335656539894 -1.4107574959454 1.27098313130534 Max fold change at or above threshold 4 3.5362843652727 Max fold change at or above threshold 0.105462527840945 -0.22951864387294 -1.14803472700254 1.27209084303454 121.268301010132 28.875419514786 0.238111850122923 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771889_at SPBC106.07c.S1 --- 3.5355512765286 --- --- --- --- 2.04194855690002 0.577547430992126 7.13779306411743 0.60249251127243 0.432372987270355 0.567627012729645 0.194580003619194 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC106.07c /DEF=peptide alpha-N-acetyltransferase activity (predicted) --- --- --- --- --- --- SPBC106.07c // |||peptide alpha-N-acetyltransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.11028211279678 -3.5355512765286 -3.41713279814743 3.49557927891858 -3.38916836092708 Max fold change at or above threshold 1 3.5355512765286 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776091_at YOR340C.S1 RNA polymerase I subunit A43 3.53540014413236 40.7924213409424 117.759311676025 RPA43 6360 // transcription from RNA polymerase I promoter // traceable author statement 5736 // DNA-directed RNA polymerase I complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 103.548027038574 40.452392578125 41.1324501037598 131.970596313477 0.000244141003349796 0.001953125 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR340C /GEN=RPA43 /DB_XREF=GI:6324916 /SEG=NC_001147:-959197,960177 /DEF=RNA polymerase I subunit A43 /NOTE=Rpa43p; go_component: DNA-directed RNA polymerase I complex [goid GO:0005736] [evidence TAS] [pmid 8246845]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 8246845]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS] --- --- --- --- --- --- S0005867 // RPA43 SGDID:S0005867, Chr XV from 960177-959197, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017792 // cdna:Genscan chromosome:SGD1:XV:959197:960177:-1 // ensembl // 11 // --- /// GENEFINDER00000022541 // cdna:GeneFinder chromosome:SGD1:XV:959197:960177:-1 // ensembl // 11 // --- /// YOR340C // cdna:known chromosome:SGD1:XV:959197:960177:-1 gene:YOR340C // ensembl // 11 // --- --- No cerevisiae_gene 3.53540014413236 -2.55975037418599 -1.06528186207755 -2.51742910469389 1.2744868259471 Max fold change at or above threshold 4 3.53540014413236 Max fold change at or above threshold 0.528486565735693 -0.845317596756526 -0.830510457285778 1.14734148830661 79.2758665084839 45.927677454396 0.579339961544046 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772504_at SPAP14E8.03.S1 --- 3.53447478865975 --- --- --- --- 0.771574318408966 0.425805747509003 0.405337423086166 0.218299567699432 0.919434010982513 0.99975597858429 0.997070014476776 0.99804699420929 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP14E8.03 /GEN=bos1 /DEF=SNARE --- --- --- --- --- --- SPAP14E8.03 // |bos1||SNARE|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.95039174719051 -1.81203359260117 -2.10402420440627 -1.90353585547157 -3.53447478865975 Max fold change at or above threshold 0 3.53447478865975 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777620_at YLL021W.S1 Component of the polarisome, which functions in actin cytoskeletal organization during polarized growth; acts as a scaffold for Mkk1p and Mpk1p cell wall integrity signaling components; potential Cdc28p substrate 3.53446413158907 157.8828125 521.948303222656 SPA2 7015 // actin filament organization // inferred from physical interaction /// 7121 // bipolar bud site selection // traceable author statement /// 7124 // pseudohyphal growth // inferred from mutant phenotype /// 7266 // Rho protein signal transduction // inferred from physical interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction /// 31384 // regulation of initiation of mating projection growth // inferred from mutant phenotype /// 31385 // regulation of termination of mating projection growth // inferred from mutant phenotype 131 // incipient bud site // inferred from direct assay /// 133 // polarisome // traceable author statement /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay 5519 // cytoskeletal regulatory protein binding // inferred from physical interaction 515.321105957031 145.798934936523 169.966690063477 528.575500488281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL021W /GEN=SPA2 /DB_XREF=GI:6323007 /SEG=NC_001144:+100946,105346 /DEF=Component of the polarisome, which functions in actin cytoskeletal organization during polarized growth; acts as a scaffold for Mkk1p and Mpk1p cell wall integrity signaling components; potential Cdc28p substrate /NOTE=Spa2p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 9214378]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 12361575]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 9214378]; go_component: polarisome [goid GO:0000133] [evidence TAS] [pmid 10639324]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 9214378]; go_function: cytoskeletal regulatory protein binding [goid GO:0005519] [evidence IPI] [pmid 10639324]; go_process: Rho protein signal transduction [goid GO:0007266] [evidence IPI] [pmid 10639324]; go_process: actin filament organization [goid GO:0007015] [evidence IPI] [pmid 10639324]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IMP,IPI] [pmid 10639324]; go_process: polar budding [goid GO:0007121] [evidence TAS] [pmid 10652251]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 9443897] --- --- --- --- --- --- S0003944 // SPA2 SGDID:S0003944, Chr XII from 100946-105346, Verified ORF // sgd // 11 // --- /// GENSCAN00000017710 // cdna:Genscan chromosome:SGD1:XII:100946:105346:1 // ensembl // 11 // --- /// GENEFINDER00000024689 // cdna:GeneFinder chromosome:SGD1:XII:100946:105346:1 // ensembl // 11 // --- /// YLL021W // cdna:known chromosome:SGD1:XII:100946:105346:1 gene:YLL021W // ensembl // 11 // --- --- No cerevisiae_gene -1.67331909935503 -3.53446413158907 -1.09871957129873 -3.03189469515808 1.02572065141138 Max fold change at or above threshold 4 3.53446413158907 Max fold change at or above threshold 0.833303045989174 -0.922194166128171 -0.807379873304192 0.896270993443189 339.915557861328 210.494308091107 0.619254703772577 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777864_at SPAC1565.02c.S1 --- 3.53390449080891 --- --- --- --- 0.964570045471191 0.527962446212769 1.08073461055756 1.1565910577774 0.888427972793579 0.981445014476776 0.780517995357513 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1565.02c /DEF=GTPase activating protein --- --- --- --- --- --- SPAC1565.02c // |||GTPase activating protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.24708258150629 -1.82696714963411 -3.53390449080891 1.12043144573251 1.19907420223941 Max fold change at or above threshold 0 3.53390449080891 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772785_at YER037W.S1 Protein of unknown function, expression is induced by low phosphate levels and by inactivation of Pho85p 3.53282630908717 502.319946289063 256.65803527832 PHM8 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 256.134765625 460.789672851563 543.850219726563 257.181304931641 0.000244141003349796 0.000732421991415322 0.00195312988944352 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER037W /GEN=PHM8 /DB_XREF=GI:6320875 /SEG=NC_001137:+225888,226853 /DEF=Protein of unknown function, expression is induced by low phosphate levels and by inactivation of Pho85p /NOTE=Phm8p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000839 // PHM8 SGDID:S0000839, Chr V from 225888-226853, Verified ORF // sgd // 11 // --- /// GENSCAN00000016836 // cdna:Genscan chromosome:SGD1:V:225888:226853:1 // ensembl // 11 // --- /// YER037W // cdna:known chromosome:SGD1:V:225888:226853:1 gene:YER037W // ensembl // 11 // --- --- No cerevisiae_gene 3.53282630908717 1.79901260856635 -1.01987405994869 2.12329715725822 1.00408589323705 Max fold change at or above threshold 4 3.53282630908717 Max fold change at or above threshold -0.845872352761496 0.557500151562657 1.12706815879084 -0.838695957592003 379.488990783691 145.830780206943 0.384281978525344 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771460_at YOR049C.S1 Suppressor of sphingoid long chain base (LCB) sensitivity of an LCB-lyase mutation; putative integral membrane transporter or flippase that may transport LCBs from the cytoplasmic side toward the extracytoplasmic side of the membrane 3.52936866770147 956.519470214844 292.315444946289 RSB1 15908 // fatty acid transport // inferred from direct assay /// 45332 // phospholipid translocation // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay /// 16021 // integral to membrane // inferred from direct assay 4012 // phospholipid-translocating ATPase activity // inferred from direct assay /// 4012 // phospholipid-translocating ATPase activity // inferred from sequence similarity 274.248260498047 945.11572265625 967.923217773438 310.382629394531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR049C /GEN=RSB1 /DB_XREF=GI:6324623 /SEG=NC_001147:-422668,423732 /DEF=Resistance to Sphingoid long-chain Base. Putative transporter or flippase that translocates LCBs from the cytoplasmic side toward the extracytoplasmic side of the membrane. /NOTE=Rsb1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 12034738]; go_component: integral to membrane [goid GO:0016021] [evidence IDA] [pmid 12034738]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12034738]; go_function: phospholipid-translocating ATPase activity [goid GO:0004012] [evidence IDA,ISS] [pmid 12034738]; go_process: fatty acid transport [goid GO:0015908] [evidence IDA] [pmid 12034738] --- --- --- --- --- S0005575 // span:5-24,31-50,65-87,108-130,145-167,214-236,256-278 // numtm:7 S0005575 // RSB1 SGDID:S0005575, Chr XV from 423732-422668, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017500 // cdna:Genscan chromosome:SGD1:XV:422668:423702:-1 // ensembl // 11 // --- /// YOR049C // cdna:known chromosome:SGD1:XV:422668:423732:-1 gene:YOR049C // ensembl // 11 // --- GENEFINDER00000022613 // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene -1.16015769454831 3.44620498573037 1.48060699931353 3.52936866770147 1.13175787817528 Max fold change at or above threshold 4 3.52936866770147 Max fold change at or above threshold -0.912196015852701 0.835423795497275 0.894837662710089 -0.818065442354664 624.417457580566 383.874946828384 0.614772925016841 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770680_at YGL169W.S1 Protein required for respiratory growth; null mutation suppresses the Cyc1p translation defect caused by the presence of an aberrant ATG codon upstream of the correct start 3.52412804603616 183.466033935547 623.282440185547 SUA5 9060 // aerobic respiration // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 608.149230957031 172.567291259766 194.364776611328 638.415649414063 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL169W /GEN=SUA5 /DB_XREF=GI:6321269 /SEG=NC_001139:+186063,187343 /DEF=Protein required for respiratory growth; null mutation suppresses the Cyc1p translation defect caused by the presence of an aberrant ATG codon upstream of the correct start /NOTE=Sua5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell growth and/or maintenance [goid GO:0008151] [evidence IMP] [pmid 1325384] --- --- --- --- --- --- S0003137 // SUA5 SGDID:S0003137, Chr VII from 186065-187345, Verified ORF // sgd // 11 // --- /// GENSCAN00000019222 // cdna:Genscan chromosome:SGD1:VII:186092:187345:1 // ensembl // 11 // --- /// YGL169W // cdna:known chromosome:SGD1:VII:186065:187345:1 gene:YGL169W // ensembl // 11 // --- --- No cerevisiae_gene -1.23203754605109 -3.52412804603616 1.12718903619932 -3.12890659285015 1.04976807815641 Max fold change at or above threshold 4 3.52412804603616 Max fold change at or above threshold 0.804982938136375 -0.907316122138025 -0.821628883337982 0.923962067339632 403.374237060547 254.384266044894 0.630640835911172 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772859_at SPBC16H5.14c.S1 --- 3.52380313314768 --- --- --- --- 9.16489887237549 2.60085439682007 13.5550889968872 9.14468288421631 0.149657994508743 0.601073980331421 0.366210997104645 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16H5.14c /DEF=short chain dehydrogenase (predicted) --- --- --- --- --- --- SPBC16H5.14c // ||SPBC21H7.08|short chain dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.22149013157058 -3.52380313314768 1.0348564784961 1.47902221133552 -1.00221068225275 Max fold change at or above threshold 4 3.52380313314768 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1778774_at SPBC336.03.S1 --- 3.52373610159502 --- --- --- --- 12.9091730117798 8.61118125915527 6.06737756729126 3.66349029541016 0.014160200022161 0.129638999700546 0.0239257998764515 0.0676269978284836 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC336.03 /GEN=efc25 /DEF=exchange factor Cdc25p-like --- --- --- --- --- --- SPBC336.03 // |efc25||exchange factor Cdc25p-like|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.93053964550376 -1.49911755696176 -2.24857305198891 -2.12763634183112 -3.52373610159502 Max fold change at or above threshold 4 3.52373610159502 Max fold change at or above threshold PPAPPA No 4 0 PAPA 2 2 0 No No 1 < x = 2
1770269_at YNR020C.S1 Hypothetical protein 3.52327196648701 117.7822265625 379.849838256836 --- --- --- --- 335.851104736328 95.3236389160156 140.240814208984 423.848571777344 0.000244141003349796 0.0561522990465164 0.0107421996071935 0.000244141003349796 P M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR020C /GEN=ARE2 /DB_XREF=GI:6324347 /SEG=NC_001146:-667409,668221 /DEF=Hypothetical ORF /NOTE=Ynr020cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005303 // YNR020C SGDID:S0005303, Chr XIV from 668222-667410, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020054 // cdna:Genscan chromosome:SGD1:XIV:667410:668045:-1 // ensembl // 11 // --- /// YNR020C // cdna:known chromosome:SGD1:XIV:667410:668222:-1 gene:YNR020C // ensembl // 11 // --- AY389305 // gb // 2 // Cross Hyb Matching Probes /// AY389304 // gb // 2 // Cross Hyb Matching Probes No cerevisiae_gene 1.10610623062672 -3.52327196648701 1.32858723023699 -2.39481713387551 1.26201333209876 Max fold change at or above threshold 4 3.52327196648701 Max fold change at or above threshold 0.555819912383312 -0.980227009899475 -0.693378734044176 1.11778583156034 248.816032409668 156.588618701084 0.629334923415487 PPMPPP Called_P_>2EXP 2 0 PMPP 0 3 1 Yes Yes 2 < x = 3
1770317_at YLL028W.S1 Polyamine transporter that recognizes spermine, putrescine, and spermidine; catalyzes uptake of polyamines at alkaline pH and excretion at acidic pH; phosphorylation enhances activity and sorting to the plasma membrane 3.5224467040637 2497.1279296875 816.033599853516 TPO1 15846 // polyamine transport // inferred from mutant phenotype 5774 // vacuolar membrane // inferred from mutant phenotype /// 5886 // plasma membrane // inferred from direct assay /// 5934 // bud tip // inferred from direct assay 297 // spermine transporter activity // inferred from mutant phenotype /// 297 // spermine transporter activity // inferred from direct assay /// 15606 // spermidine transporter activity // inferred from mutant phenotype 744.568298339844 2371.5537109375 2622.7021484375 887.498901367188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL028W /GEN=TPO1 /DB_XREF=GI:6323000 /SEG=NC_001144:+84803,86563 /DEF=plasma membrane-bound exporter, involved in the detoxification of excess spermidine /NOTE=Tpo1p; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 13679573]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12562762]; go_component: vacuolar membrane [goid GO:0005774] [evidence IMP] [pmid 11171066]; go_function: spermidine transporter activity [goid GO:0015606] [evidence IMP] [pmid 11171066]; go_function: spermine transporter activity [goid GO:0000297] [evidence IMP] [pmid 11171066]; go_process: polyamine transport [goid GO:0015846] [evidence IMP] [pmid 11171066] --- --- --- --- --- S0003951 // span:147-169,179-201,213-232,238-260,273-295,300-322,374-396,416-435,455-474,484-506,513-532,547-569 // numtm:12 S0003951 // TPO1 SGDID:S0003951, Chr XII from 84803-86563, Verified ORF // sgd // 11 // --- /// GENSCAN00000017696 // cdna:Genscan chromosome:SGD1:XII:84803:86563:1 // ensembl // 11 // --- /// GENEFINDER00000024567 // cdna:GeneFinder chromosome:SGD1:XII:84803:86563:1 // ensembl // 11 // --- /// YLL028W // cdna:known chromosome:SGD1:XII:84803:86563:1 gene:YLL028W // ensembl // 11 // --- --- No cerevisiae_gene -1.15003818060463 3.18513924944875 1.32975323319349 3.5224467040637 1.19196439513478 Max fold change at or above threshold 4 3.5224467040637 Max fold change at or above threshold -0.932791678470201 0.731262827059827 0.98813340853077 -0.786604557120397 1656.58076477051 977.723630560668 0.590205833215814 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774295_at YLR424W.S1 Essential protein present in native splicing complexes; identified as a suppressor of prp38-1, a spliceosomal maturation mutation; cold sensitive alleles accumulate pre-mRNA 3.52241383571572 89.3492469787598 317.510406494141 --- 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 3723 // RNA binding // inferred from sequence similarity 280.535247802734 79.6428985595703 99.0555953979492 354.485565185547 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR424W /GEN=ATG17 /DB_XREF=GI:6323456 /SEG=NC_001144:+973391,975517 /DEF=Essential protein present in native splicing complexes; identified as a suppressor of prp38-1, a spliceosomal maturation mutation; cold sensitive alleles accumulate pre-mRNA /NOTE=Ylr424wp --- --- --- --- --- --- S0004416 // SPP382 SGDID:S0004416, Chr XII from 973391-975517, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018139 // cdna:Genscan chromosome:SGD1:XII:973391:975517:1 // ensembl // 11 // --- /// GENEFINDER00000024875 // cdna:GeneFinder chromosome:SGD1:XII:973391:975517:1 // ensembl // 11 // --- /// YLR424W // cdna:known chromosome:SGD1:XII:973391:975517:1 gene:YLR424W // ensembl // 11 // --- --- No cerevisiae_gene -2.58242086707354 -3.52241383571572 1.21572781697062 -2.83209895085384 1.26360437043837 Max fold change at or above threshold 4 3.52241383571572 Max fold change at or above threshold 0.569563464225207 -0.914391111068713 -0.770993115074167 1.11582076191767 203.42982673645 135.376346815316 0.665469508513616 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778518_at YNL012W.S1 Meiosis-specific protein with similarity to phospholipase B, required for meiotic spindle pole body duplication and separation; required for spore formation 3.52218716653583 137.289291381836 60.8629245758057 SPO1 7126 // meiosis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 4620 // phospholipase activity // inferred from sequence similarity 49.4941520690918 100.250915527344 174.327667236328 72.2316970825195 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL012W /GEN=SPO1 /DB_XREF=GI:9755342 /SEG=NC_001146:+609684,611663 /DEF=Meiosis-specific protein with similarity to phospholipase B, required for meiotic spindle pole body duplication and separation; required for spore formation /NOTE=Spo1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10855497]; go_function: phospholipase activity [goid GO:0004620] [evidence ISS] [pmid 8921875]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 10855497] --- --- --- --- --- --- S0004957 // SPO1 SGDID:S0004957, Chr XIV from 609685-609789,609874-611664, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000020027 // cdna:Genscan chromosome:SGD1:XIV:610084:611664:1 // ensembl // 11 // --- /// GENEFINDER00000020434 // cdna:GeneFinder chromosome:SGD1:XIV:610084:611664:1 // ensembl // 11 // --- /// YNL012W // cdna:known chromosome:SGD1:XIV:609685:611664:1 gene:YNL012W // ensembl // 11 // --- --- No cerevisiae_gene 1.53592740274359 2.02551031458015 1.54300723837623 3.52218716653583 1.45939861706666 Max fold change at or above threshold 4 3.52218716653583 Max fold change at or above threshold -0.91323025898107 0.021638311399894 1.38602843894624 -0.494436491365059 99.0761079788208 54.292940276694 0.547992259529411 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777478_at SPAC31G5.03.S1 --- 3.52201631909407 --- --- --- --- 7.87563848495483 13.4145641326904 8.3651065826416 2.23611640930176 0.194580003619194 0.149657994508743 0.149657994508743 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31G5.03 /GEN=rps1101 /DEF=40S ribosomal protein S11 --- --- --- --- --- --- AB000704 // Fission yeast mRNA for ribosomal protein S11 homolog, partial cds. // gb // 9 // --- /// SPAC31G5.03 // |rps1101|rps11-1|40S ribosomal protein S11|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- U97382 // gb // 6 // Cross Hyb Matching Probes No No 1.48768143393864 1.70329861614609 1.37986515351307 1.06214964013671 -3.52201631909407 Max fold change at or above threshold 3 3.52201631909407 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771155_at SPBC29A10.08.S1 --- 3.52064506230175 --- --- --- --- 0.85993093252182 1.62123227119446 1.71480464935303 0.244253799319267 0.718017578125 0.805419981479645 0.725830018520355 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A10.08 /DEF=GPI anchored protein (predicted) --- --- --- --- --- --- D89134 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0531. // gb // 11 // --- /// SPBC29A10.08 // |||GPI anchored protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.3084795335048 1.88530521450142 -1.78170020094572 1.99411904433327 -3.52064506230175 Max fold change at or above threshold 0 3.52064506230175 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774122_at YOR388C.S1 NAD(+)-dependent formate dehydrogenase, may protect cells from exogenous formate; YPL275W and YPL276W comprise a continuous open reading frame in some S. cerevisiae strains but not in the genomic reference strain S288C /// NAD(+)-dependent formate dehydrogenase, may protect cells from exogenous formate; YPL275W and YPL276W comprise a continuous open reading frame in some S. cerevisiae strains but not in the genomic reference strain S288C /// NAD(+)-dependent formate dehydrogenase, may protect cells from exogenous formate 3.52027053022154 6031.03979492188 1842.32147216797 FDH2 /// FDH1 42183 // formate catabolism // inferred from genetic interaction /// 42183 // formate catabolism // traceable author statement /// 6735 // NADH regeneration // traceable author statement 5829 // cytosol // inferred from direct assay 8863 // formate dehydrogenase activity // inferred from genetic interaction /// 8863 // formate dehydrogenase activity // inferred from sequence similarity 1779.99694824219 6266.07080078125 5796.0087890625 1904.64599609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR388C /GEN=FDH1 /DB_XREF=GI:6324964 /SEG=NC_001147:-1071789,1072919 /DEF=NAD(+)-dependent formate dehydrogenase, may protect cells from exogenous formate /NOTE=Fdh1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 11921099]; go_function: formate dehydrogenase activity [goid GO:0008863] [evidence IGI,ISS] [pmid 11921099]; go_process: NADH regeneration [goid GO:0006735] [evidence TAS] [pmid 11921099]; go_process: formate catabolism [goid GO:0042183] [evidence IGI,TAS] [pmid 11921099] --- --- --- --- --- --- S0005915 // FDH1 SGDID:S0005915, Chr XV from 1072919-1071789, reverse complement, Verified ORF // sgd // 11 // --- /// S0006196 // FDH2 SGDID:S0006196, Chr XVI from 18369-19079, Pseudogene ORF // sgd // 10 // --- /// GENSCAN00000017832 // cdna:Genscan chromosome:SGD1:XV:1071789:1072919:-1 // ensembl // 11 // --- /// GENEFINDER00000022854 // cdna:GeneFinder chromosome:SGD1:XV:1071789:1072919:-1 // ensembl // 11 // --- /// GENSCAN00000016971 // cdna:Genscan chromosome:SGD1:XVI:18369:19079:1 // ensembl // 10 // --- /// GENEFINDER00000020968 // cdna:GeneFinder chromosome:SGD1:XVI:18369:19079:1 // ensembl // 10 // --- /// YOR388C // cdna:known chromosome:SGD1:XV:1071789:1072919:-1 gene:YOR388C // ensembl // 11 // --- /// YPL275W // cdna:pseudogene chromosome:SGD1:XVI:18369:19079:1 gene:YPL275W // ensembl // 10 // --- --- No cerevisiae_gene -1.79384538203745 3.52027053022154 1.24303465945582 3.25619029559926 1.07002767503318 Max fold change at or above threshold 4 3.52027053022154 Max fold change at or above threshold -0.888806779782469 0.95998211861451 0.766261404825568 -0.837436743657609 3936.68063354492 2426.49328781062 0.616380528086069 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771243_at SPAC17H9.17c.S1 --- 3.51826277803084 --- --- --- --- 5.81549501419067 1.69191145896912 3.28050088882446 4.70005226135254 0.0461426004767418 0.5 0.24609400331974 0.018554700538516 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17H9.17c /GEN=mdm10 /DEF=Mdm10pMdm12pMmm1p complex --- --- --- --- --- --- SPAC17H9.17c // |mdm10||Mdm10p/Mdm12p/Mmm1p complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.51826277803084 -3.43723365863014 -1.63274112663902 -1.77274605655559 -1.23732560635765 Max fold change at or above threshold 3 3.51826277803084 Max fold change at or above threshold PAAAAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1779169_at YAL025C.S1 Essential nuclear protein, constituent of 66S pre-ribosomal particles; required for normal concentration of free 60S ribosomal subunits; required for maintenance of M1 satellite double-stranded RNA of the L-A virus 3.51696782359231 16.732476234436 51.3748378753662 MAK16 42273 // ribosomal large subunit biogenesis // inferred from mutant phenotype 5730 // nucleolus // inferred from direct assay --- 44.2869644165039 20.0450420379639 13.4199104309082 58.4627113342285 0.00292969006113708 0.018554700538516 0.0375977009534836 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL025C /GEN=MAK16 /DB_XREF=GI:6319294 /SEG=NC_001133:-100228,101148 /DEF=putative nuclear protein /NOTE=Mak16p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 10838225]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: host-pathogen interaction [goid GO:0030383] [evidence IMP] [pmid 3332963]; go_process: ribosomal large subunit biogenesis [goid GO:0042273] [evidence IMP] [pmid 7739558] --- --- --- --- --- --- S0000023 // MAK16 SGDID:S0000023, Chr I from 101146-100226, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018177 // cdna:GeneFinder chromosome:SGD1:I:100226:101146:-1 // ensembl // 11 // --- /// GENSCAN00000020357 // cdna:Genscan chromosome:SGD1:I:100226:101146:-1 // ensembl // 11 // --- /// YAL025C // cdna:known chromosome:SGD1:I:100226:101146:-1 gene:YAL025C // ensembl // 11 // --- --- No cerevisiae_gene 3.51696782359231 -2.20937248884924 1.15324945075447 -3.30009388993416 1.32008847534472 Max fold change at or above threshold 4 3.51696782359231 Max fold change at or above threshold 0.487389638933971 -0.667199134532854 -0.982739398081349 1.16254889368023 34.0536570549011 20.9961528603384 0.616560882917464 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1774708_at SPBPJ4664.04.S1 --- 3.51647848216831 --- --- --- --- 2.81280827522278 4.62377262115479 5.79597187042236 4.43449449539185 0.567627012729645 0.219482004642487 0.0805663987994194 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPJ4664.04 /DEF=WD repeat protein --- --- --- --- --- --- SPBPJ4664.04 // |||coatomer alpha subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.49046476822363 1.64382786480126 -3.51647848216831 2.06056414206308 1.57653635139445 Max fold change at or above threshold 4 3.51647848216831 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769683_at YCL018W.S1 Beta-isopropylmalate dehydrogenase, catalyzes the third step in the leucine biosynthesis pathway 3.51616473145664 373.941558837891 1013.18417358398 LEU2 9098 // leucine biosynthesis // inferred from mutant phenotype 5829 // cytosol // traceable author statement 3862 // 3-isopropylmalate dehydrogenase activity // inferred from sequence similarity /// 3862 // 3-isopropylmalate dehydrogenase activity // inferred from mutant phenotype 966.220886230469 274.793975830078 473.089141845703 1060.1474609375 0.000732421991415322 0.00195312988944352 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL018W /GEN=LEU2 /DB_XREF=GI:10383772 /SEG=NC_001135:+91323,92417 /DEF=leucine biosynthesis /NOTE=Leu2p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: 3-isopropylmalate dehydrogenase activity [goid GO:0003862] [evidence IMP,ISS] [pmid 6297759]; go_process: leucine biosynthesis [goid GO:0009098] [evidence IMP] [pmid 6297759] --- --- --- --- --- --- S0000523 // LEU2 SGDID:S0000523, Chr III from 91323-92417, Verified ORF // sgd // 11 // --- /// GENSCAN00000022451 // cdna:Genscan chromosome:SGD1:III:91323:92417:1 // ensembl // 11 // --- /// GENEFINDER00000023297 // cdna:GeneFinder chromosome:SGD1:III:91323:92417:1 // ensembl // 11 // --- /// YCL018W // cdna:known chromosome:SGD1:III:91323:92417:1 gene:YCL018W // ensembl // 11 // --- --- No cerevisiae_gene 1.21733964862778 -3.51616473145664 -1.01068014056062 -2.04236538268638 1.09721025082936 Max fold change at or above threshold 4 3.51616473145664 Max fold change at or above threshold 0.717933299742016 -1.10265647523919 -0.580527315604382 0.965250491101557 693.562866210938 379.781826692687 0.547580969505339 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779770_at SPBC365.07c.S1 --- 3.51557546814992 --- --- --- --- 1.42042434215546 4.10302972793579 0.436326086521149 2.70721292495728 0.665526986122131 0.334473013877869 0.953857004642487 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC365.07c /DEF=sequence orphan --- --- --- --- --- --- SPBC365.07c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.68483391380347 2.88859434900246 -3.51557546814992 -3.25541925187324 1.90591842494698 Max fold change at or above threshold 2 3.51557546814992 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770935_at YJL207C.S1 Hypothetical protein 3.51541251464754 102.843711853027 372.130065917969 --- --- 30136 // clathrin-coated vesicle // inferred from direct assay --- 341.102966308594 108.656715393066 97.0307083129883 403.157165527344 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL207C /GEN=NUC1 /DB_XREF=GI:6322254 /SEG=NC_001142:-41389,47433 /DEF=Hypothetical ORF /NOTE=Yjl207cp; go_component: clathrin-coated vesicle [goid GO:0030136] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003743 // YJL207C SGDID:S0003743, Chr X from 47433-41389, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000023983 // cdna:Genscan chromosome:SGD1:X:41389:46896:-1 // ensembl // 11 // --- /// YJL207C // cdna:known chromosome:SGD1:X:41389:47433:-1 gene:YJL207C // ensembl // 11 // --- --- No cerevisiae_gene -1.49773415567199 -3.13927183492204 1.40674433506166 -3.51541251464754 1.18192219167807 Max fold change at or above threshold 4 3.51541251464754 Max fold change at or above threshold 0.657485343217843 -0.817478840562685 -0.891250493045589 1.05124399039043 237.486888885498 157.594505325368 0.663592445313267 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770206_at SPAC16A10.07c.S1 --- 3.51425898619513 --- --- --- --- 9.83870506286621 2.96370840072632 5.29348182678223 4.69439792633057 0.366210997104645 0.432372987270355 0.567627012729645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16A10.07c /GEN=taz1 /DEF=involved in telomere maintenance --- --- --- --- --- --- Y09406 // S.pombe mRNA for Myb-domain protein. // gb // 10 // --- /// SPAC16A10.07c // |taz1|myb1, myb|human TTAGGG repeat factor/TRF family protein Taz1p|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -3.51425898619513 -3.31972776419402 -1.81979438249527 -1.85864528958757 -2.09583959801992 Max fold change at or above threshold 4 3.51425898619513 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769309_at SPBC1105.11c.S1 --- 3.51190884640425 --- --- --- --- 7.00401544570923 1.99436140060425 12.300365447998 3.59003114700317 0.303710997104645 0.780517995357513 0.398925989866257 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1105.11c /GEN=h3.3 /DEF=histone H3 --- --- --- --- --- --- SPBC1105.11c // |h3.3|hht3|histone H3|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.35784228257713 -3.51190884640425 -1.70907983843399 1.75618765311739 -1.95096230615044 Max fold change at or above threshold 3 3.51190884640425 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775972_at SPBC18H10.02.S1 --- 3.5115730976982 --- --- --- --- 1.95293307304382 6.85786724090576 3.39619588851929 3.42561936378479 0.334473013877869 0.398925989866257 0.366210997104645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18H10.02 /GEN=lcf1 /DEF=long-chain-fatty-acid-CoA ligase activity (predicted) --- --- --- --- --- --- SPBC18H10.02 // |lcf1||long-chain-fatty-acid-CoA ligase activity |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.07437046731277 3.5115730976982 -3.50132279613145 1.73902318282009 1.75408948267011 Max fold change at or above threshold 3 3.5115730976982 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Sc-WBP1-5_at AFFX-r2-Sc-WBP1-5 Beta subunit of the oligosaccharyl transferase (OST) glycoprotein complex; required for N-linked glycosylation of proteins in the endoplasmic reticulum 3.51080934618708 253.431182861328 651.066009521484 WBP1 6487 // N-linked glycosylation // inferred from physical interaction /// 7049 // cell cycle // inferred from direct assay 5635 // nuclear membrane // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 8250 // oligosaccharyl transferase complex // inferred from physical interaction 4579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from physical interaction 616.065612792969 175.476806640625 331.385559082031 686.06640625 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=WBP1 SGD:YEL002C Oligosaccharyltransferase beta subunit (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- S0000728 // span:393-415 // numtm:1 S0000728 // WBP1 SGDID:S0000728, Chr V from 150013-148721, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016801 // cdna:Genscan chromosome:SGD1:V:148721:150013:-1 // ensembl // 11 // --- /// GENEFINDER00000019675 // cdna:GeneFinder chromosome:SGD1:V:148721:150013:-1 // ensembl // 11 // --- /// YEL002C // cdna:known chromosome:SGD1:V:148721:150013:-1 gene:YEL002C // ensembl // 11 // --- --- AFFX_control cerevisiae_gene 1.51797130444492 -3.51080934618708 1.43899596368755 -1.85905992554271 1.11362554897307 Max fold change at or above threshold 4 3.51080934618708 Max fold change at or above threshold 0.682734334887738 -1.15349191173611 -0.503716567211578 0.974474144059946 452.248596191406 239.942548998211 0.530554546810931 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 No No 3 < x
1770117_at SPAC6G9.08.S1 --- 3.50968964482626 --- --- --- --- 1.40246486663818 1.09580874443054 1.84192836284637 0.399597972631454 0.7470703125 0.904784977436066 0.725830018520355 0.981445014476776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G9.08 /GEN=ubp6 /DEF=ubiquitin family protein --- --- --- --- --- --- SPAC6G9.08 // |ubp6||ubiquitin family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.22038626914894 -1.2798445657294 -3.09105874493939 1.31335080590048 -3.50968964482626 Max fold change at or above threshold 0 3.50968964482626 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771711_at YAR008W.S1 Subunit of the tRNA splicing endonuclease, which is composed of Sen2p, Sen15p, Sen34p, and Sen54p; Sen34p contains the active site for tRNA 3' splice site cleavage and has similarity to Sen2p and to Archaeal tRNA splicing endonuclease 3.50929316650498 36.9280557632446 116.818183898926 SEN34 6388 // tRNA splicing // traceable author statement 214 // tRNA-intron endonuclease complex // traceable author statement /// 5637 // nuclear inner membrane // traceable author statement /// 5741 // mitochondrial outer membrane // inferred from direct assay /// 5741 // mitochondrial outer membrane // inferred from physical interaction /// 5741 // mitochondrial outer membrane // inferred from mutant phenotype 213 // tRNA-intron endonuclease activity // traceable author statement 102.670486450195 29.256742477417 44.5993690490723 130.965881347656 0.000244141003349796 0.00292969006113708 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR008W /GEN=SEN34 /DB_XREF=GI:6319322 /SEG=NC_001133:+158969,159796 /DEF=Subunit of the tRNA splicing endonuclease, which is composed of Sen2p, Sen15p, Sen34p, and Sen54p; Sen34p contains the active site for tRNA 3' splice site cleavage and has similarity to Sen2p and to Archaeal tRNA splicing endonuclease /NOTE=Sen34p; go_component: mitochondrial outer membrane [goid GO:0005741] [evidence IDA,IMP,IPI] [pmid 12925762]; go_component: nuclear inner membrane [goid GO:0005637] [evidence TAS] [pmid 9582290]; go_component: tRNA-intron endonuclease complex [goid GO:0000214] [evidence TAS] [pmid 9582290]; go_function: tRNA-intron endonuclease activity [goid GO:0000213] [evidence TAS] [pmid 9582290]; go_process: tRNA splicing [goid GO:0006388] [evidence TAS] [pmid 9582290] --- --- --- --- --- --- S0000066 // SEN34 SGDID:S0000066, Chr I from 158967-159794, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018230 // cdna:GeneFinder chromosome:SGD1:I:159096:159794:1 // ensembl // 11 // --- /// GENSCAN00000020383 // cdna:Genscan chromosome:SGD1:I:159096:159794:1 // ensembl // 11 // --- /// YAR008W // cdna:known chromosome:SGD1:I:158967:159794:1 gene:YAR008W // ensembl // 11 // --- --- No cerevisiae_gene 1.50500378012527 -3.50929316650498 -1.42973679345713 -2.30206141116543 1.27559424208228 Max fold change at or above threshold 4 3.50929316650498 Max fold change at or above threshold 0.537894919768564 -0.9928380619031 -0.672932506787792 1.12787564892233 76.8731198310852 47.959862923059 0.623883394201277 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771756_at SPCC1919.07.S1 --- 3.50813138193873 --- --- --- --- 0.818707644939423 0.486965626478195 0.876695215702057 0.233374282717705 0.850341975688934 0.969726979732513 0.919434010982513 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1919.07 /DEF=sequence orphan --- --- --- --- --- --- SPCC1919.07 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.02884468027871 -1.68124319340655 -1.45431845910145 1.07082817794736 -3.50813138193873 Max fold change at or above threshold 0 3.50813138193873 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774420_at SPBC582.09.S1 --- 3.50747197928273 --- --- --- --- 0.37489128112793 1.10873544216156 1.31492066383362 0.772810816764832 0.981445014476776 0.904784977436066 0.962401986122131 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC582.09 /GEN=pex11 /DEF=involved in peroxisome organization and biogenesis (predicted) --- --- --- --- --- --- SPBC582.09 // |pex11||peroxisomal biogenesis factor 11|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.61427695610808 2.95748527099837 3.36657883958871 3.50747197928273 2.06142648727302 Max fold change at or above threshold 0 3.50747197928273 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777665_at YOR368W.S1 Checkpoint protein, involved in the activation of the DNA damage and meiotic pachytene checkpoints; with Mec3p and Ddc1p, forms a clamp that is loaded onto partial duplex DNA; homolog of human and S. pombe Rad1 and U. maydis Rec1 proteins 3.50653987703503 88.987247467041 272.124328613281 RAD17 77 // DNA damage checkpoint // inferred from mutant phenotype /// 7131 // meiotic recombination // inferred from mutant phenotype 5634 // nucleus // inferred from physical interaction 3690 // double-stranded DNA binding // inferred from direct assay 279.326324462891 98.3158187866211 79.6586761474609 264.922332763672 0.00122069998178631 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR368W /GEN=RAD17 /DB_XREF=GI:6324944 /SEG=NC_001147:+1026839,1028044 /DEF=Checkpoint protein, involved in the activation of the DNA damage and meiotic pachytene checkpoints; with Mec3p and Ddc1p, forms a clamp that is loaded onto partial duplex DNA; homolog of human and S. pombe Rad1 and U. maydis Rec1 proteins /NOTE=Rad17p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 11356855]; go_function: exonuclease activity [goid GO:0004527] [evidence ISS] [pmid 9311982]; go_process: DNA damage response, signal transduction resulting in cell cycle arrest [goid GO:0000077] [evidence IMP] [pmid 9564050]; go_process: meiotic recombination [goid GO:0007131] [evidence IMP] [pmid 10511543] --- --- --- --- --- --- S0005895 // RAD17 SGDID:S0005895, Chr XV from 1026839-1028044, Verified ORF // sgd // 11 // --- /// GENSCAN00000017816 // cdna:Genscan chromosome:SGD1:XV:1026839:1028044:1 // ensembl // 11 // --- /// YOR368W // cdna:known chromosome:SGD1:XV:1026839:1028044:1 gene:YOR368W // ensembl // 11 // --- --- No cerevisiae_gene 1.03963163849092 -2.84111273150381 -1.02098350547042 -3.50653987703503 -1.0543706208116 Max fold change at or above threshold 4 3.50653987703503 Max fold change at or above threshold 0.93029498084967 -0.774597702844847 -0.950324663361919 0.794627385357095 180.555788040161 106.171202098198 0.588024362168784 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772451_at SPAC222.16c.S1 --- 3.50038231135211 --- --- --- --- 2.36727714538574 3.44778776168823 8.28637504577637 2.82448077201843 0.24609400331974 0.466064006090164 0.0676269978284836 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC222.16c /GEN=csn3 /DEF=COP9signalosome complex (subunit 3) (predicted) --- --- --- --- --- --- SPAC222.16c // |csn3|SPAC821.02c|COP9/signalosome complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.44798964254493 1.45643604442708 1.41171860837056 3.50038231135211 1.19313481208732 Max fold change at or above threshold 3 3.50038231135211 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778873_at SPCC338.15.S1 --- 3.49727269799742 --- --- --- --- 1.42085552215576 1.87260460853577 0.493970513343811 1.02410316467285 0.753906011581421 0.888427972793579 0.994140982627869 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC338.15 /DEF=dolichyl-di-phosphooligosaccharide-protein glycotransferase subunit (predicted) --- --- --- --- --- --- SPCC338.15 // |||dolichyl-di-phosphooligosaccharide-protein glycotransferase subunit |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- AB015170 // gb // 8 // Cross Hyb Matching Probes No No -1.48722420875093 1.31794160583942 -3.49727269799742 -2.87639744432847 -1.38741444335801 Max fold change at or above threshold 0 3.49727269799742 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775290_at SPBC3B9.13c.S1 --- 3.49621086498188 --- --- --- --- 4.91121673583984 1.40472555160522 2.75683236122131 1.67472493648529 0.466064006090164 0.805419981479645 0.665526986122131 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B9.13c /GEN=rpp102 /DEF=60S acidic ribosomal protein --- --- --- --- --- --- SPBC3B9.13c // |rpp102|rpp1-2|60S acidic ribosomal protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.67425934757652 -3.49621086498188 -1.96697294802218 -1.78147093922828 -2.93255126787979 Max fold change at or above threshold 2 3.49621086498188 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773600_at YIL074C.S1 3-phosphoglycerate dehydrogenase, catalyzes the first step in serine and glycine biosynthesis; isozyme of Ser3p 3.49559738706272 266.630973815918 906.996734619141 SER33 9070 // serine family amino acid biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4617 // phosphoglycerate dehydrogenase activity // inferred from mutant phenotype 838.5361328125 239.883499145508 293.378448486328 975.457336425781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL074C /GEN=SER33 /DB_XREF=GI:6322116 /SEG=NC_001141:-221078,222487 /DEF=3-phosphoglycerate dehydrogenase, catalyzes the first step in serine and glycine biosynthesis; isozyme of Ser3p /NOTE=Ser33p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: phosphoglycerate dehydrogenase activity [goid GO:0004617] [evidence IMP] [pmid 12525494]; go_process: serine family amino acid biosynthesis [goid GO:0009070] [evidence IMP] [pmid 12525494] --- --- --- --- --- --- S0001336 // SER33 SGDID:S0001336, Chr IX from 222487-221078, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016421 // cdna:Genscan chromosome:SGD1:IX:221078:222487:-1 // ensembl // 11 // --- /// GENEFINDER00000019094 // cdna:GeneFinder chromosome:SGD1:IX:221078:222487:-1 // ensembl // 11 // --- /// YIL074C // cdna:known chromosome:SGD1:IX:221078:222487:-1 gene:YIL074C // ensembl // 11 // --- --- No cerevisiae_gene -1.02631493235331 -3.49559738706272 1.06255167930068 -2.85820631044607 1.1632859912119 Max fold change at or above threshold 4 3.49559738706272 Max fold change at or above threshold 0.672058093712989 -0.926248381280669 -0.783425450080718 1.0376157376484 586.813854217529 374.554344259518 0.638284767081646 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774822_at YLR381W.S1 Outer kinetochore protein that forms a complex with Mcm16p and Mcm22p; may bind the kinetochore to spindle microtubules 3.49477931425505 97.1737213134766 338.221420288086 CTF3 7059 // chromosome segregation // inferred from physical interaction 778 // condensed nuclear chromosome kinetochore // inferred from direct assay 5515 // protein binding // inferred from direct assay 313.571441650391 89.7256774902344 104.621765136719 362.871398925781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR381W /GEN=CTF3 /DB_XREF=GI:6323413 /SEG=NC_001144:+879723,881924 /DEF=Outer kinetochore protein that forms a complex with Mcm16p and Mcm22p; may bind the kinetochore to spindle microtubules /NOTE=Ctf3p; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IDA] [pmid 11782448]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 11782448]; go_process: chromosome segregation [goid GO:0007059] [evidence IPI] [pmid 11782448] --- --- --- --- --- --- S0004373 // CTF3 SGDID:S0004373, Chr XII from 879723-881924, Verified ORF // sgd // 11 // --- /// GENSCAN00000018106 // cdna:Genscan chromosome:SGD1:XII:879723:881924:1 // ensembl // 11 // --- /// YLR381W // cdna:known chromosome:SGD1:XII:879723:881924:1 gene:YLR381W // ensembl // 11 // --- --- No cerevisiae_gene 1.09770047208258 -3.49477931425505 -1.05946500008146 -2.99719127507186 1.15722081391059 Max fold change at or above threshold 4 3.49477931425505 Max fold change at or above threshold 0.681172892052404 -0.909225672180338 -0.803390672377957 1.03144345250589 217.697570800781 140.748218210412 0.646530954354164 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770528_at SPBC776.14.S1 --- 3.49450474634386 --- --- --- --- 0.331804662942886 0.337497889995575 0.365071386098862 0.478991359472275 0.919434010982513 0.665526986122131 0.870360970497131 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC776.14 /GEN=plh1 /DEF=phospholipid-diacylglycerol acyltransferase (PMID 12963726) --- --- --- --- --- --- SPBC776.14 // |plh1||phospholipid-diacylglycerol acyltransferase Plh1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 1.01349313069716 1.01715836963288 3.49450474634386 1.10025996277726 1.44359441854717 Max fold change at or above threshold 0 3.49450474634386 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775355_at YFL025C.S1 GPI inositol deacylase of the ER that negatively regulates COPII vesicle formation, prevents production of vesicles with defective subunits, required for proper discrimination between resident ER proteins and Golgi-bound cargo molecules 3.49281271856139 108.545787811279 302.932739257813 BST1 6505 // GPI anchor metabolism // inferred from genetic interaction /// 6621 // protein-ER retention // inferred from mutant phenotype /// 6888 // ER to Golgi transport // inferred from mutant phenotype /// 16050 // vesicle organization and biogenesis // inferred from mutant phenotype /// 16050 // vesicle organization and biogenesis // inferred from genetic interaction /// 30433 // ER-associated protein catabolism // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity 16789 // carboxylic ester hydrolase activity // inferred from genetic interaction 308.431549072266 88.3046340942383 128.78694152832 297.433929443359 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL025C /GEN=BST1 /DB_XREF=GI:14318494 /SEG=NC_001138:-84143,87232 /DEF=Negatively regulates COPII vesicle formation /NOTE=Bst1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 8862519]; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 8862519]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER-associated protein catabolism [goid GO:0030433] [evidence IMP] [pmid 11673477]; go_process: vesicle organization and biogenesis [goid GO:0016050] [evidence IGI,IMP] [pmid 8862519] --- --- --- --- --- S0001869 // span:52-74,708-730,751-773,804-838,870-892,921-943,956-973,988-1010 // numtm:8 S0001869 // BST1 SGDID:S0001869, Chr VI from 87232-84143, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000023221 // cdna:Genscan chromosome:SGD1:VI:84143:87232:-1 // ensembl // 11 // --- /// YFL025C // cdna:known chromosome:SGD1:VI:84143:87232:-1 gene:YFL025C // ensembl // 11 // --- --- No cerevisiae_gene -1.24269026790235 -3.49281271856139 -1.45139130826892 -2.39489769235992 -1.03697500029498 Max fold change at or above threshold 4 3.49281271856139 Max fold change at or above threshold 0.904550614221194 -1.03440648569508 -0.677823750557301 0.807679622031189 205.739263534546 113.528512305678 0.551807712126935 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771796_at SPBC1709.08.S1 --- 3.49270338992024 --- --- --- --- 6.52732038497925 8.39033985137939 9.60521411895752 4.24452114105225 0.0375977009534836 0.00292969006113708 0.0805663987994194 0.194580003619194 P P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1709.08 /GEN=cft1 /DEF=CPF complex (PMID 14617822) --- --- --- --- --- --- SPBC1709.08 // |cft1||cleavage factor one Cft1 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.49270338992024 1.28541872568219 -1.63016196366595 1.47154016540404 -1.53782256421064 Max fold change at or above threshold 4 3.49270338992024 Max fold change at or above threshold PAPAAA No 3 0 PPAA 2 2 0 No No 1 < x = 2
1779467_at YKR102W.S1 Lectin-like protein with similarity to Flo1p, thought to be involved in flocculation 3.49264449254063 1.44648930430412 2.79148095846176 FLO10 501 // flocculation (sensu Saccharomyces) // inferred from sequence similarity 9277 // cell wall (sensu Fungi) // inferred from sequence similarity 5537 // mannose binding // inferred from sequence similarity 1.63094770908356 0.734111726284027 2.15886688232422 3.95201420783997 0.746826171875 0.828612983226776 0.5 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR102W /GEN=FLO10 /DB_XREF=GI:6322955 /SEG=NC_001143:+645992,649501 /DEF=Lectin-like protein with similarity to Flo1p, thought to be involved in flocculation /NOTE=Flo10p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence ISS] [pmid 7502576]; go_function: mannose binding [goid GO:0005537] [evidence ISS] [pmid 7502576]; go_process: flocculation (sensu Saccharomyces) [goid GO:0000501] [evidence ISS] [pmid 7502576] --- --- --- --- --- S0001810 // span:7-26 // numtm:1 S0001810 // FLO10 SGDID:S0001810, Chr XI from 645994-649503, Verified ORF // sgd // 11 // --- /// GENSCAN00000018503 // cdna:Genscan chromosome:SGD1:XI:645994:649503:1 // ensembl // 11 // --- /// GENEFINDER00000023050 // cdna:GeneFinder chromosome:SGD1:XI:645994:649503:1 // ensembl // 11 // --- /// YKR102W // cdna:known chromosome:SGD1:XI:645994:649503:1 gene:YKR102W // ensembl // 11 // --- --- No cerevisiae_gene 3.49264449254063 -2.22166143202642 3.40669936755654 1.32368859547147 2.42313974005987 Max fold change at or above threshold 1 3.49264449254063 Max fold change at or above threshold -0.359862863183205 -1.02116043961778 0.0294075012011744 1.35161580159981 2.11898513138294 1.35617612215498 0.640012099221232 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780226_at YML029W.S1 Protein that interacts in the two-hybrid system with the U1 snRNP-specific protein, Snp1p; may have a role in pre-mRNA splicing 3.4916249258298 390.901184082031 1211.42669677734 USA1 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction --- --- 1157.03454589844 331.374237060547 450.428131103516 1265.81884765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML029W /GEN=USA1 /DB_XREF=GI:6323612 /SEG=NC_001145:+217362,219878 /DEF=Protein that interacts in the two-hybrid system with the U1 snRNP-specific protein, Snp1p; may have a role in pre-mRNA splicing /NOTE=Usa1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 11425851] --- --- --- --- --- S0004491 // span:537-559,564-583 // numtm:2 S0004491 // USA1 SGDID:S0004491, Chr XIII from 217362-219878, Verified ORF // sgd // 11 // --- /// GENSCAN00000018693 // cdna:Genscan chromosome:SGD1:XIII:217362:219878:1 // ensembl // 11 // --- /// GENEFINDER00000021894 // cdna:GeneFinder chromosome:SGD1:XIII:218097:219878:1 // ensembl // 11 // --- /// YML029W // cdna:known chromosome:SGD1:XIII:217362:219878:1 gene:YML029W // ensembl // 11 // --- --- No cerevisiae_gene -1.913065214864 -3.4916249258298 1.07377352803371 -2.56874397046159 1.0940199254581 Max fold change at or above threshold 4 3.4916249258298 Max fold change at or above threshold 0.744057483742261 -0.98224056498412 -0.73332160548015 0.971504686722009 801.163940429688 478.283752592458 0.596986120388719 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778520_at YML020W.S1 Hypothetical protein 3.49156716075695 227.311790466309 620.68310546875 --- --- --- --- 602.981384277344 172.696487426758 281.927093505859 638.384826660156 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML020W /GEN=UNG1 /DB_XREF=GI:6323621 /SEG=NC_001145:+231149,233143 /DEF=Hypothetical ORF /NOTE=Yml020wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004482 // YML020W SGDID:S0004482, Chr XIII from 231149-233143, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018700 // cdna:Genscan chromosome:SGD1:XIII:231149:233143:1 // ensembl // 11 // --- /// GENEFINDER00000021937 // cdna:GeneFinder chromosome:SGD1:XIII:231149:233143:1 // ensembl // 11 // --- /// YML020W // cdna:known chromosome:SGD1:XIII:231149:233143:1 gene:YML020W // ensembl // 11 // --- --- No cerevisiae_gene -1.76662057545614 -3.49156716075695 1.34790637383598 -2.13878480701895 1.05871398903176 Max fold change at or above threshold 4 3.49156716075695 Max fold change at or above threshold 0.771813904891807 -1.08365912414789 -0.612635286200329 0.924480505456409 423.997447967529 231.900378025587 0.54693814582428 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772925_at YNR011C.S1 RNA-dependent ATPase in the DEAH-box family, required for activation of the spliceosome before the first transesterification step in RNA splicing 3.49066053174055 131.27864074707 470.423004150391 PRP2 356 // U2-type catalytic spliceosome formation for first transesterification step // traceable author statement 5634 // nucleus // traceable author statement /// 5681 // spliceosome complex // traceable author statement 4004 // ATP-dependent RNA helicase activity // traceable author statement /// 31202 // RNA splicing factor activity, transesterification mechanism // traceable author statement 438.682647705078 125.673248291016 136.884033203125 502.163360595703 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR011C /GEN=PRP2 /DB_XREF=GI:6324338 /SEG=NC_001146:-644319,646949 /DEF=RNA-dependent ATPase in the DEAH-box family, required for activation of the spliceosome before the first transesterification step in RNA splicing /NOTE=Prp2p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 9476892]; go_component: spliceosome complex [goid GO:0005681] [evidence TAS] [pmid 9476892]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 9476892]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence TAS] [pmid 9476892]; go_process: U2-type catalytic spliceosome formation for first transesterification step [goid GO:0000356] [evidence TAS] --- --- --- --- --- --- S0005294 // PRP2 SGDID:S0005294, Chr XIV from 646950-644320, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020046 // cdna:Genscan chromosome:SGD1:XIV:644320:646950:-1 // ensembl // 11 // --- /// GENEFINDER00000020652 // cdna:GeneFinder chromosome:SGD1:XIV:644320:646950:-1 // ensembl // 11 // --- /// YNR011C // cdna:known chromosome:SGD1:XIV:644320:646950:-1 gene:YNR011C // ensembl // 11 // --- --- No cerevisiae_gene -1.51466696985113 -3.49066053174055 -1.20731799295032 -3.20477587809024 1.14470759949754 Max fold change at or above threshold 4 3.49066053174055 Max fold change at or above threshold 0.697650511558446 -0.886680010203733 -0.829935424442364 1.01896492308765 300.85082244873 197.565719472422 0.656689976329016 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774112_at YPL155C.S1 Kinesin-related motor protein involved in mitotic spindle positioning 3.48993560645936 150.879444122314 437.995895385742 KIP2 92 // mitotic anaphase B // inferred from mutant phenotype /// 7026 // negative regulation of microtubule depolymerization // inferred from mutant phenotype /// 30473 // nuclear migration, microtubule-mediated // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5871 // kinesin complex // traceable author statement /// 5881 // cytoplasmic microtubule // inferred from direct assay 3777 // microtubule motor activity // traceable author statement 406.456695556641 116.465385437012 185.293502807617 469.535095214844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL155C /GEN=KIP2 /DB_XREF=GI:6325102 /SEG=NC_001148:-257215,259335 /DEF=kinesin-related protein /NOTE=Kip2p; go_component: cytoplasmic microtubule [goid GO:0005881] [evidence IDA] [pmid 9693366]; go_component: kinesin complex [goid GO:0005871] [evidence TAS] [pmid 9153752]; go_function: microtubule motor activity [goid GO:0003777] [evidence TAS] [pmid 9153752]; go_process: microtubule stabilization [goid GO:0007026] [evidence IMP] [pmid 9693366]; go_process: mitotic anaphase B [goid GO:0000092] [evidence IMP] [pmid 9813090]; go_process: nuclear migration (sensu Saccharomyces) [goid GO:0000065] [evidence IMP] [pmid 9693366] --- --- --- --- --- --- S0006076 // KIP2 SGDID:S0006076, Chr XVI from 259335-257215, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017069 // cdna:Genscan chromosome:SGD1:XVI:257215:259323:-1 // ensembl // 11 // --- /// GENEFINDER00000020775 // cdna:GeneFinder chromosome:SGD1:XVI:257215:259323:-1 // ensembl // 11 // --- /// YPL155C // cdna:known chromosome:SGD1:XVI:257215:259335:-1 gene:YPL155C // ensembl // 11 // --- --- No cerevisiae_gene 1.25459702631766 -3.48993560645936 1.06164178937504 -2.19358309599581 1.15519094739433 Max fold change at or above threshold 4 3.48993560645936 Max fold change at or above threshold 0.658578703353159 -1.04632900883135 -0.64167692435379 1.02942722983198 294.437669754028 170.092086537671 0.57768452888438 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770788_at YOR319W.S1 U2-snRNP associated splicing factor with similarity to the mammalian splicing factor SAP49; proposed to function as a U2-snRNP assembly factor along with Hsh155p and binding partner Cus1p; contains two RNA recognition motifs (RRM) 3.48946371252011 1010.28137207031 344.614700317383 HSH49 398 // nuclear mRNA splicing, via spliceosome // inferred from mutant phenotype /// 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 5686 // snRNP U2 // inferred from direct assay 3723 // RNA binding // inferred from direct assay 315.787200927734 1101.92797851563 918.634765625 373.442199707031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR319W /GEN=HSH49 /DB_XREF=GI:6324895 /SEG=NC_001147:+912817,913458 /DEF=Human SAP Homolog 49. A yeast homolog of a human spliceosome associated protein (SAP) called SAP 49. /NOTE=Hsh49p; go_component: snRNP U2 [goid GO:0005686] [evidence IDA] [pmid 11804584]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 9436903]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IMP,IPI] [pmid 9436903] --- --- --- --- --- --- S0005846 // HSH49 SGDID:S0005846, Chr XV from 912817-913458, Verified ORF // sgd // 11 // --- /// GENSCAN00000017773 // cdna:Genscan chromosome:SGD1:XV:912817:913458:1 // ensembl // 11 // --- /// YOR319W // cdna:known chromosome:SGD1:XV:912817:913458:1 gene:YOR319W // ensembl // 11 // --- --- No cerevisiae_gene 3.10462609378012 3.48946371252011 1.95652431478834 2.90903102762301 1.18257547680816 Max fold change at or above threshold 4 3.48946371252011 Max fold change at or above threshold -0.922023960729648 1.08217600443752 0.614885334160974 -0.775037377868843 677.448036193848 392.246677602512 0.579006295163683 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770412_at YML007C-A.S1 Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 3.48876516697506 293.063842773438 98.3605728149414 --- --- 5739 // mitochondrion // inferred from direct assay --- 88.5861587524414 309.056304931641 277.071380615234 108.134986877441 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244140625 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML007C-A /GEN=ERG6 /DB_XREF=GI:13129182 /SEG=NC_001145:-253162,253272 /DEF=Hypothetical ORF identified by homology. See FEBS Letters [2000] 487:31-36. /NOTE=Yml007c-ap; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007621 // YML007C-A SGDID:S0007621, Chr XIII from 253272-253162, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YML007C-A // cdna:known chromosome:SGD1:XIII:253162:253272:-1 gene:YML007C-A // ensembl // 11 // --- --- No cerevisiae_gene 2.83163989143208 3.48876516697506 -1.05944331429234 3.12770510108159 1.22067587533206 Max fold change at or above threshold 4 3.48876516697506 Max fold change at or above threshold -0.944266962184266 0.999076202687079 0.717143772712214 -0.771953013215026 195.712207794189 113.448900927282 0.579672071588832 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772719_at YLR397C.S1 ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex; may be involved in degradation of aberrant mRNAs 3.48875732175852 99.5081939697266 333.824172973633 AFG2 42493 // response to drug // inferred from mutant phenotype 5622 // intracellular // inferred from direct assay 16887 // ATPase activity // inferred from direct assay 327.2626953125 93.8049468994141 105.211441040039 340.385650634766 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR397C /GEN=AFG2 /DB_XREF=GI:6323429 /SEG=NC_001144:-912550,914892 /DEF=ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex; may be involved in degradation of aberrant mRNAs /NOTE=Afg2p; go_component: intracellular [goid GO:0005622] [evidence IDA] [pmid 12006565]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 12006565]; go_process: response to drug [goid GO:0042493] [evidence IMP] [pmid 9341149] --- --- --- --- --- --- S0004389 // AFG2 SGDID:S0004389, Chr XII from 914892-912550, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018118 // cdna:Genscan chromosome:SGD1:XII:912550:914892:-1 // ensembl // 11 // --- /// GENEFINDER00000024711 // cdna:GeneFinder chromosome:SGD1:XII:912550:914892:-1 // ensembl // 11 // --- /// YLR397C // cdna:known chromosome:SGD1:XII:912550:914892:-1 gene:YLR397C // ensembl // 11 // --- M34474 // gb // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.077106019031 -3.48875732175852 -1.31206836230224 -3.11052383730737 1.04009914820794 Max fold change at or above threshold 4 3.48875732175852 Max fold change at or above threshold 0.81640025018727 -0.90693587534009 -0.822735528374637 0.913271153527458 216.66618347168 135.468493322303 0.625240594317339 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774738_at SPCC1827.08c.S1 --- 3.48779246864376 --- --- --- --- 1.75773072242737 5.92032623291016 2.20895528793335 3.69932770729065 0.601073980331421 0.171387001872063 0.24609400331974 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1827.08c /GEN=pof7 /DEF=F-box protein --- --- --- --- --- --- SPCC1827.08c // |pof7|SPCC70.11c|F-box protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.24698645241335 3.36816450743626 3.48779246864376 1.2567085843973 2.1046043401813 Max fold change at or above threshold 2 3.48779246864376 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773682_at SPCC63.13.S1 --- 3.48709097883142 --- --- --- --- 2.16991209983826 0.831441164016724 7.56668090820313 0.812791645526886 0.533936023712158 0.870360970497131 0.24609400331974 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC63.13 /DEF=DNAJ domain protein --- --- --- --- --- --- SPCC63.13 // |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.42603390229782 -2.60982038627403 -2.02269974481983 3.48709097883142 -2.66970276057848 Max fold change at or above threshold 1 3.48709097883142 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775057_at YPL187W.S1 Mating pheromone alpha-factor, made by alpha cells; interacts with mating type a cells to induce cell cycle arrest and other responses leading to mating; also encoded by MF(ALPHA)2, although MF(ALPHA)1 produces most alpha-factor 3.48692765453358 46.565354347229 73.9289436340332 MF(ALPHA)1 749 // response to pheromone during conjugation with cellular fusion // inferred from mutant phenotype 5576 // extracellular region // traceable author statement 772 // mating pheromone activity // inferred from direct assay /// 772 // mating pheromone activity // inferred from mutant phenotype 59.9990615844727 30.8855266571045 62.2451820373535 87.8588256835938 0.000244141003349796 0.0107421996071935 0.00805663969367743 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL187W /GEN=MF(ALPHA)1 /DB_XREF=GI:6325069 /SEG=NC_001148:+193647,194144 /DEF=mating factor alpha /NOTE=Mf(alpha)1p; go_component: extracellular [goid GO:0005576] [evidence TAS] [pmid 6754095]; go_function: pheromone activity [goid GO:0005186] [evidence TAS] [pmid 6754095]; go_process: response to pheromone during conjugation with cellular fusion [goid GO:0000749] [evidence TAS] [pmid 6754095] --- --- --- --- --- --- S0006108 // MF(ALPHA)1 SGDID:S0006108, Chr XVI from 193647-194144, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020806 // cdna:GeneFinder chromosome:SGD1:XVI:193647:194144:1 // ensembl // 11 // --- /// YPL187W // cdna:known chromosome:SGD1:XVI:193647:194144:1 gene:YPL187W // ensembl // 11 // --- --- No cerevisiae_gene 3.48692765453358 -1.94262711627329 -1.01619697807853 1.03743592638892 1.46433666399761 Max fold change at or above threshold 4 3.48692765453358 Max fold change at or above threshold -0.0106478771558131 -1.26019676913021 0.0857553019888787 1.18508934429715 60.2471489906311 23.2992363198899 0.386727616331076 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1778489_at SPBC146.13c.S1 --- 3.48499586713601 --- --- --- --- 2.09005308151245 3.54237627983093 3.55045890808105 7.28382635116577 0.567627012729645 0.567627012729645 0.334473013877869 0.296630859375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC146.13c /GEN=myo1 /DEF=myosin (type I) --- --- --- --- --- --- SPBC146.13c // |myo1||myosin type I|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.24834428787148 1.69487383414565 2.47455339858764 1.69874102217145 3.48499586713601 Max fold change at or above threshold 3 3.48499586713601 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770791_at YNL263C.S1 Integral membrane protein required for the fusion of ER-derived COPII transport vesicles with the Golgi; interacts with Yip1p and Yos1p; localizes to the Golgi, the ER, and COPII vesicles 3.48419852563545 467.103652954102 1376.01684570313 YIF1 6888 // ER to Golgi transport // inferred from physical interaction 5789 // endoplasmic reticulum membrane // inferred from physical interaction /// 30138 // COPII-coated vesicle // inferred from direct assay /// 30173 // integral to Golgi membrane // inferred from direct assay --- 1381.54968261719 396.518646240234 537.688659667969 1370.48400878906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL263C /GEN=YIF1 /DB_XREF=GI:6324066 /SEG=NC_001146:-146895,147839 /DEF=Yip1-Interacting Factor, shows similarity to NADH dehydrogenases /NOTE=Yif1p; go_component: COPII-coated vesicle [goid GO:0030138] [evidence IDA] [pmid 11157978]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IPI] [pmid 11157978] --- --- --- --- --- S0005207 // span:155-172,187-209,216-238,242-264,296-313 // numtm:5 S0005207 // YIF1 SGDID:S0005207, Chr XIV from 147839-146895, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019830 // cdna:Genscan chromosome:SGD1:XIV:146895:147839:-1 // ensembl // 11 // --- /// GENEFINDER00000020658 // cdna:GeneFinder chromosome:SGD1:XIV:146895:147839:-1 // ensembl // 11 // --- /// YNL263C // cdna:known chromosome:SGD1:XIV:146895:147839:-1 gene:YNL263C // ensembl // 11 // --- --- No cerevisiae_gene -1.40788085267834 -3.48419852563545 -1.23936561118805 -2.56942313693266 -1.00807428160939 Max fold change at or above threshold 4 3.48419852563545 Max fold change at or above threshold 0.871297906568596 -0.994517735683141 -0.727117816753523 0.850337645868069 921.560249328613 527.935887164168 0.572871809031245 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774952_at YLR092W.S1 High affinity sulfate permease; sulfate uptake is mediated by specific sulfate transporters Sul1p and Sul2p, which control the concentration of endogenous activated sulfate intermediates 3.48395243656207 271.012893676758 943.372772216797 SUL2 8272 // sulfate transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from mutant phenotype 15116 // sulfate transporter activity // inferred from mutant phenotype 914.721557617188 262.552825927734 279.472961425781 972.023986816406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR092W /GEN=SUL2 /DB_XREF=GI:6323121 /SEG=NC_001144:+323545,326226 /DEF=sulfate uptake is mediated by specific sulfate transporters SUL1 and SUL2, which control the concentration of endogenous activated sulfate intermediates. /NOTE=Sul2p; go_component: plasma membrane [goid GO:0005886] [evidence IMP,ISS] [pmid 9055073]; go_function: sulfate transporter activity [goid GO:0015116] [evidence IMP] [pmid 9055073]; go_process: sulfate transport [goid GO:0008272] [evidence IMP] [pmid 9055073] --- --- --- --- --- S0004082 // span:223-245,250-272,306-328,349-371,444-461,482-504,509-531,538-560 // numtm:8 S0004082 // SUL2 SGDID:S0004082, Chr XII from 323545-326226, Verified ORF // sgd // 11 // --- /// GENSCAN00000017891 // cdna:Genscan chromosome:SGD1:XII:323545:326226:1 // ensembl // 11 // --- /// GENEFINDER00000024592 // cdna:GeneFinder chromosome:SGD1:XII:323545:326226:1 // ensembl // 11 // --- /// YLR092W // cdna:known chromosome:SGD1:XII:323545:326226:1 gene:YLR092W // ensembl // 11 // --- --- No cerevisiae_gene -1.80849966477082 -3.48395243656207 -1.2120512531438 -3.27302345439993 1.06264466899467 Max fold change at or above threshold 4 3.48395243656207 Max fold change at or above threshold 0.790658302388847 -0.886071644777238 -0.842569869053969 0.937983211442361 607.192832946777 388.952754611267 0.640575338683815 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778698_at SPCC962.01.S1 --- 3.48338143688717 --- --- --- --- 17.0922470092773 14.1668033599854 9.13550186157227 7.46698474884033 0.0561522990465164 0.129638999700546 0.0952147990465164 0.0561522990465164 M A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC962.01 /DEF=C2 domain --- --- --- --- --- --- D89235 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1491. // gb // 11 // --- /// SPCC962.01 // ||SPCP31B10.09|C2 domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- AB031034 // gb // 9 // Negative Strand Matching Probes No No -3.14324821478696 -1.20649991215061 -3.48338143688717 -1.87096968160824 -2.28904271057094 Max fold change at or above threshold 4 3.48338143688717 Max fold change at or above threshold MMAAAM No 4 0 MAAM 2 0 2 No No x = 1
1771057_at YMR274C.S1 Type II CAAX prenyl protease involved in the proteolysis and maturation of Ras and the a-factor mating pheromone 3.48230171739845 212.031364440918 753.393402099609 RCE1 7323 // peptide pheromone maturation // inferred from mutant phenotype /// 16485 // protein processing // inferred from direct assay 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay 8487 // prenyl-dependent CAAX protease activity // inferred from direct assay 702.989074707031 222.187896728516 201.87483215332 803.797729492188 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR274C /GEN=RCE1 /DB_XREF=GI:6323930 /SEG=NC_001145:-814363,815310 /DEF=Protease involved in ras and a-factor terminal proteolysis /NOTE=Rce1p; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA] [pmid 9736709]; go_function: prenyl-dependent CAAX protease activity [goid GO:0008487] [evidence IDA] [pmid 10747800]; go_process: peptide pheromone maturation [goid GO:0007323] [evidence IMP] [pmid 9065405]; go_process: protein processing [goid GO:0016485] [evidence IDA] [pmid 10825201] --- --- --- --- --- S0004887 // span:4-23,44-61,76-93,105-127,208-230,237-259,279-298 // numtm:7 S0004887 // RCE1 SGDID:S0004887, Chr XIII from 815310-814363, reverse complement, Verified ORF // sgd // 11 // --- /// YMR274C // cdna:known chromosome:SGD1:XIII:814363:815310:-1 gene:YMR274C // ensembl // 11 // --- --- No cerevisiae_gene -1.8184074838147 -3.16393955322414 -1.2628149794868 -3.48230171739845 1.1434000305441 Max fold change at or above threshold 4 3.48230171739845 Max fold change at or above threshold 0.698487457276671 -0.826111400965421 -0.890523212910118 1.01814715659887 482.712383270264 315.36241508989 0.653313289693095 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770098_at YML125C.S1 Protein required for cell viability 3.48120587460271 429.344985961914 1204.16278076172 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 1147.013671875 329.487457275391 529.202514648438 1261.31188964844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML125C /GEN=ERG13 /DB_XREF=GI:6323510 /SEG=NC_001145:-20762,21700 /DEF=Protein required for cell viability /NOTE=Yml125cp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 9.39999961853027 S0004594 // span:15-37,42-61 // numtm:2 S0004594 // YML125C SGDID:S0004594, Chr XIII from 21700-20762, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018611 // cdna:Genscan chromosome:SGD1:XIII:20762:21700:-1 // ensembl // 11 // --- /// GENEFINDER00000021889 // cdna:GeneFinder chromosome:SGD1:XIII:20762:21700:-1 // ensembl // 11 // --- /// YML125C // cdna:known chromosome:SGD1:XIII:20762:21700:-1 gene:YML125C // ensembl // 11 // --- --- No cerevisiae_gene -1.43705767914766 -3.48120587460271 -1.5396185680601 -2.16743806033686 1.09964852257305 Max fold change at or above threshold 4 3.48120587460271 Max fold change at or above threshold 0.722513052332237 -1.06599823852509 -0.629079362179518 0.972564548372375 816.753883361816 457.098715998446 0.559652944797759 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777107_at YOR268C.S1 Hypothetical protein 3.4800410298137 59.7905426025391 15.205358505249 --- --- --- --- 17.6278305053711 61.345573425293 58.2355117797852 12.782886505127 0.303710997104645 0.00585938012227416 0.00195312988944352 0.0676269978284836 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR268C /GEN=HRK1 /DB_XREF=GI:6324842 /SEG=NC_001147:-825531,825929 /DEF=Hypothetical ORF /NOTE=Yor268cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005794 // span:90-112 // numtm:1 S0005794 // YOR268C SGDID:S0005794, Chr XV from 825929-825531, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022791 // cdna:GeneFinder chromosome:SGD1:XV:825531:825848:-1 // ensembl // 10 // --- /// YOR268C // cdna:known chromosome:SGD1:XV:825531:825929:-1 gene:YOR268C // ensembl // 11 // --- --- No cerevisiae_gene 1.22147865302757 3.4800410298137 -1.23319026933531 3.30361196529778 -1.37901799396411 Max fold change at or above threshold 4 3.4800410298137 Max fold change at or above threshold -0.76871908250379 0.922597484505933 0.802277942961809 -0.956156344963952 37.497950553894 25.8483501981037 0.689327011644359 APPAPA No 3 0 APPA 2 2 0 No No 1 < x = 2
1772668_at SPAC1039.11c.S1 --- 3.47906478934596 --- --- --- --- 1.2937935590744 1.8189731836319 1.61967658996582 1.00932490825653 0.633789002895355 0.828612983226776 0.888427972793579 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1039.11c /DEF=alpha-glucosidase --- --- --- --- --- --- SPAC1039.11c // ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.47906478934596 1.40592227475086 -3.25840177758403 1.25188178485334 -1.28184051388294 Max fold change at or above threshold 0 3.47906478934596 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777888_at YHR151C.S1 Hypothetical protein 3.47631080663486 182.284194946289 581.344787597656 --- --- --- --- 591.687927246094 194.362686157227 170.205703735352 571.001647949219 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR151C /GEN=PEX28 /DB_XREF=GI:6321945 /SEG=NC_001140:-399269,400849 /DEF=Hypothetical ORF /NOTE=Yhr151cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001194 // span:476-498 // numtm:1 S0001194 // YHR151C SGDID:S0001194, Chr VIII from 400850-399270, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016679 // cdna:Genscan chromosome:SGD1:VIII:399270:400724:-1 // ensembl // 11 // --- /// GENEFINDER00000020288 // cdna:GeneFinder chromosome:SGD1:VIII:399270:400850:-1 // ensembl // 11 // --- /// YHR151C // cdna:known chromosome:SGD1:VIII:399270:400850:-1 gene:YHR151C // ensembl // 11 // --- --- No cerevisiae_gene -1.59519257730276 -3.04424650093309 -1.34382293203628 -3.47631080663486 -1.03622805533254 Max fold change at or above threshold 4 3.47631080663486 Max fold change at or above threshold 0.909474941627569 -0.812312042843468 -0.916994991764846 0.819832092980746 381.814491271973 230.763296895831 0.604385905121276 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776655_at YML100W-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 3.47353650696769 7.0942348241806 18.4468021392822 --- --- --- --- 13.8832168579102 3.9968535900116 10.1916160583496 23.0103874206543 0.171387001872063 0.398925989866257 0.111571997404099 0.064453125 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML100W-A /GEN=CUE4 /DB_XREF=GI:33438850 /SEG=NC_001145:+70138,70311 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Yml100w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028688 // YML100W-A SGDID:S0028688, Chr XIII from 70138-70311, Uncharacterized ORF // sgd // 11 // --- /// YML100W-A // cdna:known chromosome:SGD1:XIII:70138:70311:1 gene:YML100W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.45409726652895 -3.47353650696769 -3.32400616777527 -1.36221937506527 1.65742476373866 Max fold change at or above threshold 4 3.47353650696769 Max fold change at or above threshold 0.139920207278316 -1.1032756374246 -0.324293240068654 1.28764867021494 12.7705184817314 7.95237798615798 0.622713791733208 APAAAM No 4 0 AAAM 3 0 1 No No x = 1
1774442_at YGR171C.S1 Mitochondrial methionyl-tRNA synthetase (MetRS), functions as a monomer in mitochondrial protein synthesis; functions similarly to cytoplasmic MetRS although the cytoplasmic form contains a zinc-binding domain not found in Msm1p 3.47341675407467 163.673309326172 590.885681152344 MSM1 6431 // methionyl-tRNA aminoacylation // inferred from sequence similarity /// 6431 // methionyl-tRNA aminoacylation // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5739 // mitochondrion // inferred from mutant phenotype 4825 // methionine-tRNA ligase activity // inferred from sequence similarity /// 4825 // methionine-tRNA ligase activity // inferred from mutant phenotype 532.580322265625 153.330383300781 174.016235351563 649.191040039063 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR171C /GEN=MSM1 /DB_XREF=GI:6321610 /SEG=NC_001139:-840827,842554 /DEF=mitochondrial methionyl-tRNA synthetase /NOTE=Msm1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA,IMP] [pmid 2645139]; go_function: methionine-tRNA ligase activity [goid GO:0004825] [evidence IMP,ISS] [pmid 2645139]; go_process: methionyl-tRNA aminoacylation [goid GO:0006431] [evidence IMP,ISS] [pmid 2645139] --- --- --- --- scop // a.4.3.ARID domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; ARID-like; ARID domain // 4.0 --- S0003403 // MSM1 SGDID:S0003403, Chr VII from 842556-840829, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019475 // cdna:Genscan chromosome:SGD1:VII:840829:842556:-1 // ensembl // 11 // --- /// YGR171C // cdna:known chromosome:SGD1:VII:840829:842556:-1 gene:YGR171C // ensembl // 11 // --- --- No cerevisiae_gene -1.81822474312495 -3.47341675407467 1.01554620346384 -3.060520882949 1.21895423638141 Max fold change at or above threshold 4 3.47341675407467 Max fold change at or above threshold 0.617878359554871 -0.891001758057753 -0.80870122833191 1.08182462683479 377.279495239258 251.34530870809 0.666204529744441 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776762_at SPCC576.13.S1 --- 3.47320498260718 --- --- --- --- 0.336451262235641 1.16856420040131 0.697597026824951 0.344779998064041 0.828612983226776 0.888427972793579 0.985840022563934 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC576.13 /DEF=chromatin remodeling complex --- --- --- --- --- --- SPCC576.13 // |||chromatin remodeling complex|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.11271161496093 3.47320498260718 1.6452214465016 2.07339696748224 1.0247546576971 Max fold change at or above threshold 0 3.47320498260718 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769862_at SPCC1753.04.S1 --- 3.47248710426584 --- --- --- --- 5.35708427429199 7.47972917556763 6.91439819335938 6.59252405166626 0.432372987270355 0.533936023712158 0.274170011281967 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1753.04 /GEN=tol1 /DEF=3(2),5-bisphosphate nucleotidase --- --- --- --- --- --- SPCC1753.04 // |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.47248710426584 1.39623138121272 1.73604607899511 1.29070177718517 1.23061794702447 Max fold change at or above threshold 4 3.47248710426584 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770482_at SPAC24B11.09.S1 --- 3.47087372828252 --- --- --- --- 10.7813081741333 16.7477283477783 4.99711084365845 3.10622310638428 0.601073980331421 0.334473013877869 0.753906011581421 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24B11.09 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC24B11.09 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.22342091878145 1.55340410247801 -1.8553834289211 -2.15750831059016 -3.47087372828252 Max fold change at or above threshold 4 3.47087372828252 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774874_at YLR215C.S1 Protein involved in nutritional control of the cell cycle; regulates abundance of the translation initiation factor eIF2; ortholog of human D123 protein 3.47022796268117 185.763511657715 646.179992675781 CDC123 7346 // regulation of mitotic cell cycle // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 584.022644042969 168.295181274414 203.231842041016 708.337341308594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR215C /GEN=FRE1 /DB_XREF=GI:6323244 /SEG=NC_001144:-570778,571860 /DEF=Protein of unknown function /NOTE=Ylr215cp --- --- --- --- --- --- S0004205 // CDC123 SGDID:S0004205, Chr XII from 571860-570778, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017986 // cdna:Genscan chromosome:SGD1:XII:570778:571860:-1 // ensembl // 11 // --- /// GENEFINDER00000024899 // cdna:GeneFinder chromosome:SGD1:XII:570778:571860:-1 // ensembl // 11 // --- /// YLR215C // cdna:known chromosome:SGD1:XII:570778:571860:-1 gene:YLR215C // ensembl // 11 // --- --- No cerevisiae_gene -1.52246390053463 -3.47022796268117 1.01391547606569 -2.87367687158542 1.21285937888477 Max fold change at or above threshold 4 3.47022796268117 Max fold change at or above threshold 0.620117238646199 -0.913940470677422 -0.785022228350798 1.07884546038202 415.971752166748 270.998581241023 0.651483135163441 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773313_at SPBC25D12.03c.S1 --- 3.4691470162788 --- --- --- --- 2.03687143325806 2.39588165283203 7.06620645523071 2.87900519371033 0.665526986122131 0.303710997104645 0.0461426004767418 0.194580003619194 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25D12.03c /GEN=mcm7 /DEF=MCM complex subunit --- --- --- --- --- --- SPBC25D12.03c // |mcm7||MCM complex subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.18513218259357 1.1762557094729 2.46384810104061 3.4691470162788 1.4134447303359 Max fold change at or above threshold 2 3.4691470162788 Max fold change at or above threshold APAAPA No 4 0 AAPA 3 1 0 No No x = 1
1771264_at SPAC22A12.16.S1 --- 3.46733498583061 --- --- --- --- 6.68546485900879 7.5138578414917 7.33534336090088 4.02185249328613 0.5 0.219482004642487 0.334473013877869 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22A12.16 /DEF=ATP-citrate synthase (subunit 2) (similar to ATP-citrate synthase N-terminal domain) (predicted) --- --- --- --- --- --- SPAC22A12.16 // |||ATP-citrate synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.28857775676985 1.12390955602237 -3.46733498583061 1.09720767599524 -1.66228494709071 Max fold change at or above threshold 4 3.46733498583061 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770507_at YJL125C.S1 Subunit of tRNA (1-methyladenosine) methyltransferase, with Gcd10p, required for the modification of the adenine at position 58 in tRNAs, especially tRNAi-Met; first identified as a negative regulator of GCN4 expression 3.46537116023937 180.74291229248 507.659881591797 GCD14 30488 // tRNA methylation // inferred from direct assay 5634 // nucleus // inferred from direct assay 16429 // tRNA (adenine-N1-)-methyltransferase activity // inferred from direct assay /// 16429 // tRNA (adenine-N1-)-methyltransferase activity // inferred from physical interaction /// 16429 // tRNA (adenine-N1-)-methyltransferase activity // inferred from mutant phenotype 458.619262695313 132.343475341797 229.142349243164 556.700500488281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL125C /GEN=GCD14 /DB_XREF=GI:6322336 /SEG=NC_001142:-185447,186598 /DEF=Subunit of tRNA (1-methyladenosine) methyltransferase, with Gcd10p, required for the modification of the adenine at position 58 in tRNAs, especially tRNAi-Met; first identified as a negative regulator of GCN4 expression /NOTE=Gcd14p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9851972]; go_function: tRNA methyltransferase activity [goid GO:0008175] [evidence IDA] [pmid 10779558]; go_process: tRNA methylation [goid GO:0030488] [evidence IDA] [pmid 10779558] --- --- --- --- --- --- S0003661 // GCD14 SGDID:S0003661, Chr X from 186598-185447, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024042 // cdna:Genscan chromosome:SGD1:X:185447:186502:-1 // ensembl // 11 // --- /// GENEFINDER00000024371 // cdna:GeneFinder chromosome:SGD1:X:185447:186502:-1 // ensembl // 11 // --- /// YJL125C // cdna:known chromosome:SGD1:X:185447:186598:-1 gene:YJL125C // ensembl // 11 // --- --- No cerevisiae_gene 1.62658620194948 -3.46537116023937 1.13956580886551 -2.00146007147997 1.21386201097735 Max fold change at or above threshold 4 3.46537116023937 Max fold change at or above threshold 0.580944372486238 -1.07568574636636 -0.584199904659476 1.0789412785396 344.201396942139 196.951500302009 0.572198433974158 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774608_at SPAC3H5.05c.S1 --- 3.46490013233933 --- --- --- --- 4.68156003952026 7.70573949813843 16.2211380004883 10.6045179367065 0.303710997104645 0.194580003619194 0.0561522990465164 0.0375977009534836 A A M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H5.05c /GEN=rps1401 /DEF=40S ribosomal protein S14 --- --- --- --- --- --- SPAC3H5.05c // |rps1401|rps14-1, rps14|40S ribosomal protein S14|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.8929270622166 1.64597686093716 2.02575733022691 3.46490013233933 2.26516756106651 Max fold change at or above threshold 4 3.46490013233933 Max fold change at or above threshold APAAMP No 4 0 AAMP 2 1 1 No No x = 1
1776453_at SPBC3H7.01.S1 --- 3.46277236327147 --- --- --- --- 8.26689529418945 10.2782726287842 5.90437459945679 5.79765701293945 0.194580003619194 0.0676269978284836 0.0107421996071935 0.0107421996071935 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3H7.01 /GEN=spo14 /DEF=WD repeat protein --- --- --- --- --- --- M95798 // Schizosaccharomyces pombe Sec12p-like protein (St11p) mRNA, complete cds. // gb // 11 // --- /// SPBC3H7.01 // |spo14|stl1, SPBP16F5.01c|WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.46277236327147 1.24330504536672 -1.22322736505961 -1.40013055657919 -1.42590278723613 Max fold change at or above threshold 4 3.46277236327147 Max fold change at or above threshold AAAPPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1776648_at SPAC2F7.11.S1 --- 3.46109478237716 --- --- --- --- 1.24508130550385 1.37437188625336 1.39614474773407 1.55413556098938 0.696289002895355 0.780517995357513 0.805419981479645 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F7.11 /GEN=nrd1 /DEF=rrm RNA recognition motif --- --- --- --- --- --- SPAC2F7.11 // |nrd1|msa2|rrm RNA recognition motif|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.46109478237716 1.10384107461737 -1.60494019524661 1.12132817476453 1.24822013961608 Max fold change at or above threshold 0 3.46109478237716 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773896_at SPAC637.05c.S1 --- 3.45968363405307 --- --- --- --- 3.10809278488159 0.898374855518341 3.74795937538147 1.37701678276062 0.665526986122131 0.989257991313934 0.665526986122131 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC637.05c /GEN=vma2 /DEF=V-type ATPase --- --- --- --- --- --- SPAC637.05c // |vma2||V-type ATPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.58959281056132 -3.45968363405307 -2.8130819683805 1.20587113538319 -2.25712048233032 Max fold change at or above threshold 2 3.45968363405307 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776165_at YLR426W.S1 Hypothetical protein 3.45937232478753 46.0611686706543 147.960815429688 --- --- 5739 // mitochondrion // inferred from direct assay --- 133.618942260742 38.6251983642578 53.4971389770508 162.302688598633 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR426W /GEN=TUS1 /DB_XREF=GI:6323458 /SEG=NC_001144:+987058,988109 /DEF=Hypothetical ORF /NOTE=Ylr426wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004418 // span:5-27,32-54,194-216 // numtm:3 S0004418 // YLR426W SGDID:S0004418, Chr XII from 987058-987137,987209-988109, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018143 // cdna:Genscan chromosome:SGD1:XII:987609:988109:1 // ensembl // 10 // --- /// YLR426W // cdna:known chromosome:SGD1:XII:987058:988109:1 gene:YLR426W // ensembl // 11 // --- --- No cerevisiae_gene -1.4827355810951 -3.45937232478753 -1.40916742004846 -2.49768389143319 1.21466826374001 Max fold change at or above threshold 4 3.45937232478753 Max fold change at or above threshold 0.607174004399103 -0.968378069473518 -0.721714279692478 1.08291834476689 97.0109920501709 60.2923543256777 0.621500234679555 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770671_at YJL043W.S1 Hypothetical protein 3.45931547588984 12.2316522598267 30.4796476364136 --- --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 31.3533191680908 9.06344604492188 15.3998584747314 29.6059761047363 0.0239257998764515 0.02880859375 0.0239257998764515 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL043W /GEN=GYP6 /DB_XREF=GI:6322418 /SEG=NC_001142:+360046,360819 /DEF=Hypothetical ORF /NOTE=Yjl043wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003579 // YJL043W SGDID:S0003579, Chr X from 360046-360819, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024108 // cdna:Genscan chromosome:SGD1:X:355940:368289:1 // ensembl // 10 // --- /// GENEFINDER00000024531 // cdna:GeneFinder chromosome:SGD1:X:359974:360819:1 // ensembl // 11 // --- /// YJL043W // cdna:known chromosome:SGD1:X:360046:360819:1 gene:YJL043W // ensembl // 11 // --- --- No cerevisiae_gene -2.57342740435615 -3.45931547588984 -1.12393164175543 -2.03594852638005 -1.05901994439139 Max fold change at or above threshold 4 3.45931547588984 Max fold change at or above threshold 0.919592745663802 -1.13064568239781 -0.547817947674668 0.758870884408678 21.3556499481201 10.8718443757991 0.509085155554171 PAPPPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1777458_at YNL069C.S1 N-terminally acetylated protein component of the large (60S) ribosomal subunit, binds to 5.8 S rRNA; has similarity to Rpl16Ap, E. coli L13 and rat L13a ribosomal proteins; transcriptionally regulated by Rap1p 3.45803201811013 1238.56188964844 3455.83715820313 RPL16B 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3723 // RNA binding // inferred from direct assay /// 3735 // structural constituent of ribosome // traceable author statement 3637.64453125 1051.94067382813 1425.18310546875 3274.02978515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL069C /GEN=RPL16B /DB_XREF=GI:6324260 /SEG=NC_001146:-493955,495000 /DEF=N-terminally acetylated protein component of the large (60S) ribosomal subunit, binds to 5.8 S rRNA; has similarity to Rpl16Ap, E. coli L13 and rat L13a ribosomal proteins; transcriptionally regulated by Rap1p /NOTE=Rpl16bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 6337137]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0005013 // RPL16B SGDID:S0005013, Chr XIV from 495000-494973,494523-493955, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020472 // cdna:GeneFinder chromosome:SGD1:XIV:493955:495000:-1 // ensembl // 11 // --- /// YNL069C // cdna:known chromosome:SGD1:XIV:493955:495000:-1 gene:YNL069C // ensembl // 11 // --- GENSCAN00000019977 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 1.29526412180787 -3.45803201811013 -1.31533877685204 -2.55240503293334 -1.11106030487026 Max fold change at or above threshold 4 3.45803201811013 Max fold change at or above threshold 0.994409685299436 -0.998119205542643 -0.710500681016942 0.714210201260149 2347.19952392578 1297.69955623033 0.552871429549319 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778387_at SPCC645.10.S1 --- 3.45802372986907 --- --- --- --- 1.67737817764282 0.778334140777588 0.485068440437317 0.532241106033325 0.533936023712158 0.870360970497131 0.780517995357513 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC645.10 /DEF=tRNA nucleotidyltransferase (predicted) --- --- --- --- --- --- SPCC645.10 // |||tRNA nucleotidyltransferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.16123326578005 -2.15508750003829 2.40848965394317 -3.45802372986907 -3.15153820069244 Max fold change at or above threshold 0 3.45802372986907 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772974_at YJL057C.S1 probable serine/threonine kinase 3.45653940649011 946.607727050781 2336.6201171875 --- --- --- --- 2426.67041015625 896.843994140625 996.371459960938 2246.56982421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL057C /GEN=BIT61 /DB_XREF=GI:6322404 /SEG=NC_001142:-328034,330037 /DEF=probable serine/threonine kinase /NOTE=Yjl057cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-33 /// hanks // 2.1.9 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DUN1 // 3.0E-10 --- --- S0003593 // YJL057C SGDID:S0003593, Chr X from 330037-328034, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024096 // cdna:Genscan chromosome:SGD1:X:328034:330037:-1 // ensembl // 11 // --- /// GENEFINDER00000024469 // cdna:GeneFinder chromosome:SGD1:X:328034:332989:-1 // ensembl // 11 // --- /// YJL057C // cdna:known chromosome:SGD1:X:328034:330037:-1 gene:YJL057C // ensembl // 11 // --- --- No cerevisiae_gene -3.45653940649011 -2.70578877264104 -1.11660042463799 -2.43550774753362 -1.08016692114171 Max fold change at or above threshold 4 3.45653940649011 Max fold change at or above threshold 0.97291849124737 -0.922991460738069 -0.799647327724553 0.749720297215252 1641.61392211914 806.908795649053 0.491533840433945 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772797_at YNL206C.S1 Protein with a role in regulation of Ty1 transposition 3.45646977199685 104.718864440918 365.66276550293 RTT106 335 // negative regulation of DNA transposition // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 340.256896972656 98.4405822753906 110.997146606445 391.068634033203 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL206C /GEN=RTT106 /DB_XREF=GI:6324123 /SEG=NC_001146:-256787,258154 /DEF=Regulator of Ty1 Transposition - same phenotype as RTT101 - RTT105, disruption causes increase in Ty1 transposition. Isolated from the same screen as the other named RTT genes. /NOTE=Rtt106p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: negative regulation of DNA transposition [goid GO:0000335] [evidence IMP] [pmid 11779788] --- --- --- --- --- --- S0005150 // RTT106 SGDID:S0005150, Chr XIV from 258154-256787, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019876 // cdna:Genscan chromosome:SGD1:XIV:256787:258154:-1 // ensembl // 11 // --- /// GENEFINDER00000020687 // cdna:GeneFinder chromosome:SGD1:XIV:256787:257782:-1 // ensembl // 11 // --- /// YNL206C // cdna:known chromosome:SGD1:XIV:256787:258154:-1 gene:YNL206C // ensembl // 11 // --- --- No cerevisiae_gene 1.07975334942129 -3.45646977199685 -1.18286303119779 -3.06545625158348 1.14933345220223 Max fold change at or above threshold 4 3.45646977199685 Max fold change at or above threshold 0.690480123707489 -0.898704089762022 -0.81618404211632 1.02440800817085 235.190814971924 152.163803697327 0.646980213557624 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779082_at SPCC24B10.04.S1 --- 3.45586410984335 --- --- --- --- 3.03931188583374 3.61717700958252 0.879465103149414 1.4024543762207 0.533936023712158 0.567627012729645 0.780517995357513 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC24B10.04 /DEF=sequence orphan --- --- --- --- --- --- SPCC24B10.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.57578006805568 1.19013024837701 -2.65297854004369 -3.45586410984335 -2.16713779597166 Max fold change at or above threshold 2 3.45586410984335 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779822_at SPAC11E3.06.S1 --- 3.45461354929502 --- --- --- --- 17.1624984741211 9.32339572906494 8.4424352645874 9.69890308380127 0.0805663987994194 0.0461426004767418 0.0461426004767418 0.129638999700546 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11E3.06 /GEN=map1 /DEF=transcription factor --- --- --- --- --- --- SPAC11E3.06 // |map1||MADS-box transcription factor Map1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.45461354929502 -1.84079910076308 -1.90123042030539 -2.03288481773865 -1.76952984536831 Max fold change at or above threshold 4 3.45461354929502 Max fold change at or above threshold AMPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1770077_at SPCC4B3.13.S1 --- 3.45243200508326 --- --- --- --- 6.12348604202271 7.15929126739502 1.77367317676544 4.96990823745728 0.0239257998764515 0.129638999700546 0.466064006090164 0.0952147990465164 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4B3.13 /DEF=MatE family transporter --- --- --- --- --- --- SPCC4B3.13 // |||MatE family transporter|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.15206284811392 1.16915286787037 -1.01716838039187 -3.45243200508326 -1.23211249573405 Max fold change at or above threshold 3 3.45243200508326 Max fold change at or above threshold PAAMAA No 4 0 PAAA 3 1 0 No No x = 1
1772225_at YPL212C.S1 tRNA:pseudouridine synthase, introduces pseudouridines at positions 26-28, 34-36, 65, and 67 of tRNA; nuclear protein that appears to be involved in tRNA export; also acts on U2 snRNA 3.45231121713107 168.843673706055 532.421157836914 PUS1 6400 // tRNA modification // inferred from direct assay 5634 // nucleus // inferred from physical interaction 16439 // tRNA-pseudouridine synthase activity // inferred from direct assay 572.504150390625 165.832138061523 171.855209350586 492.338165283203 0.000732421991415322 0.0239257998764515 0.0239257998764515 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL212C /GEN=PUS1 /DB_XREF=GI:6325044 /SEG=NC_001148:-151514,153148 /DEF=Involved in tRNA biogenesis /NOTE=Pus1p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 8641292]; go_function: pseudouridylate synthase activity [goid GO:0004730] [evidence IDA] [pmid 10356324]; go_process: tRNA modification [goid GO:0006400] [evidence IDA] [pmid 10356324] --- --- --- --- --- --- S0006133 // PUS1 SGDID:S0006133, Chr XVI from 153148-151514, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017025 // cdna:Genscan chromosome:SGD1:XVI:151514:153148:-1 // ensembl // 11 // --- /// GENEFINDER00000020935 // cdna:GeneFinder chromosome:SGD1:XVI:151514:153148:-1 // ensembl // 11 // --- /// YPL212C // cdna:known chromosome:SGD1:XVI:151514:153148:-1 gene:YPL212C // ensembl // 11 // --- --- No cerevisiae_gene 1.85045333067233 -3.45231121713107 -1.3331188194307 -3.33131682509962 -1.16282707854125 Max fold change at or above threshold 4 3.45231121713107 Max fold change at or above threshold 1.04429012708674 -0.869804825867852 -0.841455861576819 0.666970560357931 350.632415771484 212.461775577729 0.605938772404304 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1778006_at YHR016C.S1 Protein involved in the organization of the actin cytoskeleton; contains SH3 domain similar to Rvs167p 3.45032994417119 670.163970947266 931.873413085938 YSC84 6897 // endocytosis // inferred from mutant phenotype /// 7015 // actin filament organization // inferred from physical interaction 30479 // actin cortical patch // inferred from direct assay --- 902.888000488281 479.095764160156 861.232177734375 960.858825683594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR016C /GEN=YSC84 /DB_XREF=GI:6321804 /SEG=NC_001140:-136873,138447 /DEF=SH3 domain in C-terminus /NOTE=Ysc84p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 12388763]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: actin filament organization [goid GO:0007015] [evidence IPI] [pmid 10512884]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 12388763] --- --- --- --- --- --- S0001058 // YSC84 SGDID:S0001058, Chr VIII from 138447-138401,138232-136873, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000016566 // cdna:Genscan chromosome:SGD1:VIII:136873:138021:-1 // ensembl // 11 // --- /// GENEFINDER00000020214 // cdna:GeneFinder chromosome:SGD1:VIII:136873:138021:-1 // ensembl // 11 // --- /// YHR016C // cdna:known chromosome:SGD1:VIII:136873:138447:-1 gene:YHR016C // ensembl // 11 // --- --- No cerevisiae_gene -3.45032994417119 -1.88456686122246 1.47958458767801 -1.0483677036586 1.06420599804623 Max fold change at or above threshold 4 3.45032994417119 Max fold change at or above threshold 0.466287005920579 -1.47353977777418 0.275615554798702 0.731637217054901 801.018692016602 218.46911275291 0.272739094518386 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777914_at SPAC22G7.02.S1 --- 3.44936520146428 --- --- --- --- 2.13342618942261 3.31292843818665 0.618498206138611 2.46496653556824 0.194580003619194 0.24609400331974 0.274170011281967 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22G7.02 /GEN=kap111 /DEF=karyopherin --- --- --- --- --- --- SPAC22G7.02 // |kap111||karyopherin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.6958032408168 1.55286761483099 1.68506660193884 -3.44936520146428 1.15540277314931 Max fold change at or above threshold 1 3.44936520146428 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779884_at SPAC458.06.S1 --- 3.44892864910968 --- --- --- --- 0.720187962055206 0.208814978599548 2.41624093055725 0.337805598974228 0.919434010982513 0.989257991313934 0.665526986122131 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC458.06 /DEF=WD repeat protein --- --- --- --- --- --- SPAC458.06 // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.48212371163232 -3.44892864910968 3.37836960777717 3.35501432662385 -2.13195981428997 Max fold change at or above threshold 0 3.44892864910968 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778632_at YKR069W.S1 S-adenosyl-L-methionine uroporphyrinogen III transmethylase, involved in sulfate assimilation, methionine metabolism, and siroheme biosynthesis 3.4484811849557 454.985549926758 1576.88287353516 MET1 103 // sulfate assimilation // non-traceable author statement /// 6555 // methionine metabolism // inferred from mutant phenotype /// 6780 // uroporphyrinogen III biosynthesis // non-traceable author statement /// 19354 // siroheme biosynthesis // inferred from genetic interaction /// 19354 // siroheme biosynthesis // inferred from sequence similarity --- 4851 // uroporphyrin-III C-methyltransferase activity // inferred from direct assay /// 4851 // uroporphyrin-III C-methyltransferase activity // inferred from sequence similarity 1556.61218261719 451.390655517578 458.580444335938 1597.15356445313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR069W /GEN=MET1 /DB_XREF=GI:6322922 /SEG=NC_001143:+571254,573035 /DEF=S-adenosyl-L-methionine uroporphyrinogen III transmethylase, involved in sulfate assimilation, methionine metabolism, and siroheme biosynthesis /NOTE=Met1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: uroporphyrin-III C-methyltransferase activity [goid GO:0004851] [evidence IDA,ISS] [pmid 10051442]; go_process: methionine metabolism [goid GO:0006555] [evidence IMP] [pmid 1101032]; go_process: siroheme biosynthesis [goid GO:0019354] [evidence IGI,ISS] [pmid 9003798]; go_process: sulfate assimilation [goid GO:0000103] [evidence NAS] [pmid 9003798]; go_process: uroporphyrinogen III biosynthesis [goid GO:0006780] [evidence NAS] [pmid 9003798] --- --- --- --- --- --- S0001777 // MET1 SGDID:S0001777, Chr XI from 571254-573035, Verified ORF // sgd // 11 // --- /// GENSCAN00000018474 // cdna:Genscan chromosome:SGD1:XI:571254:573035:1 // ensembl // 11 // --- /// GENEFINDER00000022944 // cdna:GeneFinder chromosome:SGD1:XI:571254:573035:1 // ensembl // 11 // --- /// YKR069W // cdna:known chromosome:SGD1:XI:571254:573035:1 gene:YKR069W // ensembl // 11 // --- --- No cerevisiae_gene -1.10192633238998 -3.4484811849557 -1.01792618974293 -3.39441465907097 1.02604462581539 Max fold change at or above threshold 4 3.4484811849557 Max fold change at or above threshold 0.834449388354909 -0.87128207648224 -0.860185795137455 0.897018483264787 1015.93421173096 647.945793275924 0.637783220403562 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774423_at SPCC1742.01.S1 --- 3.44824958095594 --- --- --- --- 1.06672561168671 3.67833614349365 1.29655492305756 0.596133768558502 0.953857004642487 0.633789002895355 0.567627012729645 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1742.01 /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPCC1742.01 // ||SPCC1795.13, SPCPB16A4.07c|glycoprotein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.41110028235306 3.44824958095594 1.40182724332315 1.21545307326731 -1.78940645195479 Max fold change at or above threshold 1 3.44824958095594 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774023_at SPAC17H9.20.S1 --- 3.44810344659212 --- --- --- --- 1.52578771114349 3.91108536720276 1.18916392326355 0.442500561475754 0.725830018520355 0.601073980331421 0.904784977436066 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17H9.20 /GEN=psc3 /DEF=mitotic cohesin complex (associated with) (PMID 11069892) --- --- --- --- --- --- SPAC17H9.20 // |psc3|SPAC607.01|mitotic cohesin complex, non-SMC subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.60606067472001 2.56332210479767 2.89077308135994 -1.28307601777567 -3.44810344659212 Max fold change at or above threshold 1 3.44810344659212 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772086_at SPAC31A2.03.S1 --- 3.44765349423806 --- --- --- --- 3.195969581604 11.0185956954956 6.79718637466431 2.76875138282776 0.533936023712158 0.14453125 0.0952147990465164 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31A2.03 /GEN=mrpl11 /DEF=mitochondrial ribosomal protein subunit YmL11 --- --- --- --- --- --- SPAC31A2.03 // |mrpl11||mitochondrial ribosomal protein subunit L11|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.43967236380097 3.44765349423806 -1.79605521828851 2.12679945822667 -1.1542999495823 Max fold change at or above threshold 4 3.44765349423806 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779580_at SPBC3E7.01.S1 --- 3.44697253797616 --- --- --- --- 3.15514159202576 3.00597643852234 4.49122667312622 3.36343574523926 0.274170011281967 0.432372987270355 0.334473013877869 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3E7.01 /GEN=fab1 /DEF=1-phosphatidylinositol-3-phosphate 5-kinase activity (PMID 10567352) --- --- --- --- --- --- SPBC3E7.01 // |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase Fab1 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.67612533731812 -1.04962286184011 -3.44697253797616 1.42346279624257 1.06601737105553 Max fold change at or above threshold 4 3.44697253797616 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775693_at SPAC6G9.03c.S1 --- 3.44679982634764 --- --- --- --- 0.231241598725319 0.426122903823853 0.136585727334023 0.0856628119945526 0.919434010982513 0.805419981479645 0.870360970497131 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G9.03c /DEF=hypothetical protein --- --- --- --- --- --- SPAC6G9.03c // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 3.44679982634764 1.8427605853479 -1.73496766213124 -1.69301436715869 -2.31241598725319 Max fold change at or above threshold 0 3.44679982634764 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777902_at YGL241W.S1 Karyopherin, responsible for nuclear import of Spt15p, histones H2A and H2B, and Nap1p; amino terminus shows similarity to those of other importins, particularly Cse1p; localization is primarily nuclear 3.4464093349391 83.1339569091797 289.120101928711 KAP114 6606 // protein-nucleus import // inferred from sequence similarity /// 6606 // protein-nucleus import // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8320 // protein carrier activity // inferred from sequence similarity /// 8320 // protein carrier activity // inferred from physical interaction 251.603973388672 73.0046691894531 93.2632446289063 326.63623046875 0.000244141003349796 0.00292969006113708 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL241W /GEN=KAP114 /DB_XREF=GI:6321196 /SEG=NC_001139:+45445,48459 /DEF=Karyopherin, responsible for nuclear import of Spt15p, histones H2A and H2B, and Nap1p; amino terminus shows similarity to those of other importins, particularly Cse1p; localization is primarily nuclear /NOTE=Kap114p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10385521]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10385521]; go_function: protein carrier activity [goid GO:0008320] [evidence IPI,ISS] [pmid 10385521]; go_process: protein-nucleus import [goid GO:0006606] [evidence IMP,ISS] [pmid 10385521] --- --- --- --- --- --- S0003210 // KAP114 SGDID:S0003210, Chr VII from 45445-48459, Verified ORF // sgd // 11 // --- /// GENSCAN00000019170 // cdna:Genscan chromosome:SGD1:VII:45643:48459:1 // ensembl // 11 // --- /// YGL241W // cdna:known chromosome:SGD1:VII:45445:48459:1 gene:YGL241W // ensembl // 11 // --- GENEFINDER00000021667 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.22321481758102 -3.4464093349391 1.02780864325187 -2.69778275878994 1.29821570808093 Max fold change at or above threshold 4 3.4464093349391 Max fold change at or above threshold 0.531961367806966 -0.919052140018261 -0.754463219900444 1.14155399211174 186.127029418945 123.085900466153 0.661300515300783 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778128_at YHL016C.S1 Plasma membrane urea transporter, expression is highly sensitive to nitrogen catabolite repression and induced by allophanate, the last intermediate of the allantoin degradative pathway 3.44617972805098 839.856353759766 288.927841186523 DUR3 15840 // urea transport // inferred from sequence similarity /// 15840 // urea transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from mutant phenotype 15204 // urea transporter activity // inferred from sequence similarity /// 15204 // urea transporter activity // inferred from mutant phenotype 260.2021484375 783.009338378906 896.703369140625 317.653533935547 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL016C /GEN=DUR3 /DB_XREF=GI:6321771 /SEG=NC_001140:-72033,74240 /DEF=Plasma membrane urea transporter, expression is highly sensitive to nitrogen catabolite repression and induced by allophanate, the last intermediate of the allantoin degradative pathway /NOTE=Dur3p; go_component: plasma membrane [goid GO:0005886] [evidence IMP,ISS] [pmid 8335627]; go_function: urea transporter activity [goid GO:0015204] [evidence IMP,ISS] [pmid 8335627]; go_process: urea transport [goid GO:0015840] [evidence IMP,ISS] [pmid 8335627] --- --- --- --- --- S0001008 // span:13-35,54-76,86-108,135-157,162-184,191-213,254-276,296-318,338-360,397-419,424-446,453-475,495-517,619-638,653-675 // numtm:15 S0001008 // DUR3 SGDID:S0001008, Chr VIII from 74240-72033, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016540 // cdna:Genscan chromosome:SGD1:VIII:72033:74159:-1 // ensembl // 11 // --- /// GENEFINDER00000020259 // cdna:GeneFinder chromosome:SGD1:VIII:72033:73904:-1 // ensembl // 11 // --- /// YHL016C // cdna:known chromosome:SGD1:VIII:72033:74240:-1 gene:YHL016C // ensembl // 11 // --- --- No cerevisiae_gene 2.80766625257556 3.00923471647269 -1.1650056318212 3.44617972805098 1.2207952003588 Max fold change at or above threshold 4 3.44617972805098 Max fold change at or above threshold -0.943804121922687 0.678299377557821 1.03105559192683 -0.765550847561961 564.392097473145 322.30199251086 0.571060427588988 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776674_at SPBC16H5.02.S1 --- 3.44435097920125 --- --- --- --- 9.0750904083252 20.728702545166 4.15523672103882 10.241551399231 0.533936023712158 0.171387001872063 0.533936023712158 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16H5.02 /GEN=pfk1 /DEF=6-phosphofructokinase (predicted) --- --- --- --- --- --- D89110 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0325. // gb // 10 // --- /// SPBC16H5.02 // |pfk1||6-phosphofructokinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.44435097920125 2.28413179511139 -1.06985372362403 -2.18401285355805 1.12853436587648 Max fold change at or above threshold 4 3.44435097920125 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779736_at YER039C-A.S1 Hypothetical protein 3.44258409876258 143.929740905762 347.084579467773 --- --- --- --- 342.355102539063 99.4471282958984 188.412353515625 351.814056396484 0.000244141003349796 0.00195312988944352 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER039C-A /GEN=HVG1 /DB_XREF=GI:6320878 /SEG=NC_001137:-229262,229480 /DEF=Hypothetical ORF /NOTE=Yer039c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0007226 // span:13-32,47-69 // numtm:2 S0007226 // YER039C-A SGDID:S0007226, Chr V from 229480-229262, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YER039C-A // cdna:known chromosome:SGD1:V:229262:229480:-1 gene:YER039C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.37649991638656 -3.44258409876258 -1.02313951555085 -1.81705231186272 1.0276290722331 Max fold change at or above threshold 4 3.44258409876258 Max fold change at or above threshold 0.788363390055418 -1.18896054057838 -0.464764188567751 0.865361339090709 245.507160186768 122.846828726391 0.500379820421271 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774021_at SPCC757.02c.S1 --- 3.44256099998898 --- --- --- --- 1.21171379089355 1.43820023536682 2.43476176261902 1.88163185119629 0.59130859375 0.633789002895355 0.366210997104645 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC757.02c /DEF=hypothetical protein --- --- --- --- --- --- SPCC757.02c // |||hypothetical protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.44256099998898 1.18691414274178 2.60387588601687 2.00935384322361 1.55286823120889 Max fold change at or above threshold 0 3.44256099998898 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773561_at YGL224C.S1 Pyrimidine nucleotidase; overexpression suppresses the 6-AU sensitivity of transcription elongation factor S-II, as well as resistance to other pyrimidine derivatives 3.44210924574459 263.173126220703 330.061386108398 SDT1 6206 // pyrimidine base metabolism // inferred from mutant phenotype --- 8252 // nucleotidase activity // inferred from direct assay 312.559661865234 224.031951904297 302.314300537109 347.563110351563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL224C /GEN=SDT1 /DB_XREF=GI:6321214 /SEG=NC_001139:-78013,78855 /DEF=suppressor of deletion of TFIIS /NOTE=Sdt1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: nucleotidase activity [goid GO:0008252] [evidence IDA] [pmid 11934891]; go_process: pyrimidine base metabolism [goid GO:0006206] [evidence IMP] [pmid 11934891] --- --- --- --- --- --- S0003192 // SDT1 SGDID:S0003192, Chr VII from 78856-78014, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019182 // cdna:Genscan chromosome:SGD1:VII:78014:78856:-1 // ensembl // 11 // --- /// YGL224C // cdna:known chromosome:SGD1:VII:78014:78856:-1 gene:YGL224C // ensembl // 11 // --- --- No cerevisiae_gene 3.44210924574459 -1.39515662479589 -1.37772319950379 -1.03388976740406 1.11198965431893 Max fold change at or above threshold 4 3.44210924574459 Max fold change at or above threshold 0.305855585096421 -1.39255148317858 0.109297986301682 0.977397911780482 296.617256164551 52.1239646340209 0.175728025092056 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772629_at SPBC725.09c.S1 --- 3.44184470334235 --- --- --- --- 4.8164005279541 1.39936602115631 4.52428245544434 6.88149833679199 0.274170011281967 0.567627012729645 0.303710997104645 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC725.09c /GEN=hob3 /DEF=amphiphysin --- --- --- --- --- --- D89200 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1103. // gb // 10 // --- /// AF275638 // Schizosaccharomyces pombe Hob3p (hob3) mRNA, complete cds. // gb // 11 // --- /// SPBC725.09c // |hob3||amphiphysin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.36372858024831 -3.44184470334235 1.15873911612673 -1.06456671867563 1.42876372030361 Max fold change at or above threshold 3 3.44184470334235 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773963_at YCR087C-A.S1 Hypothetical protein 3.44127670849318 75.5224094390869 227.272392272949 --- --- 5730 // nucleolus // inferred from direct assay --- 210.021835327148 61.0302085876465 90.0146102905273 244.52294921875 0.000244141003349796 0.00292969006113708 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR087C-A /GEN=CSM1 /DB_XREF=GI:6319930 /SEG=NC_001135:-264002,264463 /DEF=Hypothetical ORF /NOTE=Ycr087c-ap; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007223 // YCR087C-A SGDID:S0007223, Chr III from 264463-264002, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023295 // cdna:GeneFinder chromosome:SGD1:III:264002:264463:-1 // ensembl // 11 // --- /// YCR087C-A // cdna:known chromosome:SGD1:III:264002:264463:-1 gene:YCR087C-A // ensembl // 11 // --- YCR087W // ensembl // 11 // Negative Strand Matching Probes No cerevisiae_gene 2.28921989268955 -3.44127670849318 1.01330043008601 -2.33319718487133 1.16427393769729 Max fold change at or above threshold 4 3.44127670849318 Max fold change at or above threshold 0.65485106855051 -1.00942640987001 -0.685662665321208 1.0402380066407 151.397400856018 89.5233088660808 0.591313380281999 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778060_at SPAC806.08c.S1 --- 3.44092442186282 --- --- --- --- 0.941498994827271 2.45237183570862 0.705641150474548 3.23962688446045 0.601073980331421 0.111571997404099 0.533936023712158 0.14404296875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC806.08c /DEF=sequence orphan --- --- --- --- --- --- SPAC806.08c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.37774408229579 2.60475247364288 -1.48614170050199 -1.33424615924696 3.44092442186282 Max fold change at or above threshold 1 3.44092442186282 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779956_at SPCC1827.04.S1 --- 3.4408113562381 --- --- --- --- 0.874156534671783 3.00780773162842 0.64179265499115 1.3919095993042 0.718994140625 0.567627012729645 0.870360970497131 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1827.04 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC1827.04 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -3.04522779803247 3.4408113562381 -2.88444272898694 -1.3620544390366 1.59228873101866 Max fold change at or above threshold 1 3.4408113562381 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774509_at YMR214W.S1 One of several homologs of bacterial chaperone DnaJ, located in the ER lumen where it cooperates with Kar2p to mediate maturation of proteins 3.44019964859519 527.356231689453 1279.64752197266 SCJ1 6457 // protein folding // inferred from mutant phenotype /// 30968 // unfolded protein response // inferred from mutant phenotype 5788 // endoplasmic reticulum lumen // inferred from direct assay 51087 // chaperone binding // inferred from mutant phenotype /// 51087 // chaperone binding // inferred from sequence similarity 1226.71862792969 356.583557128906 698.12890625 1332.57641601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR214W /GEN=SCJ1 /DB_XREF=GI:37362683 /SEG=NC_001145:+695349,696482 /DEF=dnaJ homolog /NOTE=Scj1p; go_component: endoplasmic reticulum lumen [goid GO:0005788] [evidence IDA] [pmid 7744969]; go_function: co-chaperone activity [goid GO:0003767] [evidence IMP] [pmid 9817751]; go_process: protein folding [goid GO:0006457] [evidence IMP] [pmid 9817751] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 4.99999994363301E-27 S0004827 // span:5-27 // numtm:1 S0004827 // SCJ1 SGDID:S0004827, Chr XIII from 695349-696482, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022026 // cdna:GeneFinder chromosome:SGD1:XIII:693380:696482:1 // ensembl // 11 // --- /// GENSCAN00000018895 // cdna:Genscan chromosome:SGD1:XIII:695349:696482:1 // ensembl // 11 // --- /// YMR214W // cdna:known chromosome:SGD1:XIII:695349:696482:1 gene:YMR214W // ensembl // 11 // --- --- No cerevisiae_gene -1.32243694319601 -3.44019964859519 -1.08471591464735 -1.75715203445594 1.08629345448564 Max fold change at or above threshold 4 3.44019964859519 Max fold change at or above threshold 0.705388586321018 -1.19359513099628 -0.448206192576047 0.93641273725131 903.501876831055 458.210917168908 0.507149933961441 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773744_at SPAC11E3.13c.S1 --- 3.44002426206766 --- --- --- --- 1.64796662330627 2.70626044273376 0.479056686162949 2.42227911949158 0.665526986122131 0.601073980331421 0.753906011581421 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11E3.13c /DEF=GPI anchored protein (predicted) (pers. comm. Birgit Eisenhaber) --- --- --- --- --- --- SPAC11E3.13c // |||GPI anchored protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.4146188849568 1.64218158575582 -1.19369520751633 -3.44002426206766 1.46985933163611 Max fold change at or above threshold 1 3.44002426206766 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773948_at YLL008W.S1 Nucleolar DEAD-box protein required for ribosome assembly and function, including synthesis of 60S ribosomal subunits; constituent of 66S pre-ribosomal particles 3.43935519405684 167.570098876953 383.46647644043 DRS1 27 // ribosomal large subunit assembly and maintenance // traceable author statement /// 6365 // 35S primary transcript processing // traceable author statement 5730 // nucleolus // traceable author statement 4004 // ATP-dependent RNA helicase activity // traceable author statement 341.861877441406 155.210418701172 179.929779052734 425.071075439453 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL008W /GEN=DRS1 /DB_XREF=GI:6323021 /SEG=NC_001144:+131728,133986 /DEF=Nucleolar DEAD-box protein required for ribosome assembly and function, including synthesis of 60S ribosomal subunits /NOTE=Drs1p; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 10690410]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0003931 // DRS1 SGDID:S0003931, Chr XII from 131728-133986, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024860 // cdna:GeneFinder chromosome:SGD1:XII:131728:133986:1 // ensembl // 11 // --- /// GENSCAN00000017728 // cdna:Genscan chromosome:SGD1:XII:132298:133986:1 // ensembl // 11 // --- /// YLL008W // cdna:known chromosome:SGD1:XII:131728:133986:1 gene:YLL008W // ensembl // 11 // --- --- No cerevisiae_gene 3.43935519405684 -2.20257042215443 -1.0550933754336 -1.89997386336595 1.24340004981196 Max fold change at or above threshold 4 3.43935519405684 Max fold change at or above threshold 0.51196033201939 -0.928391977849898 -0.737637573779497 1.15406921961001 275.518287658691 129.587363772946 0.470340335206631 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776564_at SPAC23G3.02c.S1 --- 3.43760182988506 --- --- --- --- 3.29539918899536 7.54653644561768 0.958633184432983 2.494544506073 0.725830018520355 0.466064006090164 0.696289002895355 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23G3.02c /DEF=peptide synthetase (predicted) --- --- --- --- --- --- SPAC23G3.02c // |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.1081374749663 2.29002194053411 1.83757739345066 -3.43760182988506 -1.32104245122614 Max fold change at or above threshold 2 3.43760182988506 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770301_at SPAC4G9.08c.S1 --- 3.43746353489647 --- --- --- --- 2.8146493434906 1.18925595283508 2.58727812767029 0.818815767765045 0.601073980331421 0.919434010982513 0.780517995357513 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G9.08c /GEN=rpc2 /DEF=localization DNA-directed RNA polymerase III complex (subunit) --- --- --- --- --- --- SPAC4G9.08c // |rpc2||DNA-directed RNA polymerase III complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.47093891446314 -2.36673134726021 -2.03391210250143 -1.08788046920377 -3.43746353489647 Max fold change at or above threshold 2 3.43746353489647 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774534_at YNL130C-A.S1 Identified by fungal homology and RT-PCR 3.43743254472644 59.5415344238281 18.2983388900757 --- --- --- --- 21.3234519958496 73.2979278564453 45.7851409912109 15.2732257843018 0.00195312988944352 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL130C-A /GEN=CPT1 /DB_XREF=GI:33438866 /SEG=NC_001146:-381245,381391 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ynl130c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028579 // YNL130C-A SGDID:S0028579, Chr XIV from 381391-381245, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YNL130C-A // cdna:known chromosome:SGD1:XIV:381245:381391:-1 gene:YNL130C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.28752928316948 3.43743254472644 -1.32703638870823 2.14717302808769 -1.3961328338226 Max fold change at or above threshold 4 3.43743254472644 Max fold change at or above threshold -0.665436346868624 1.3000531252155 0.259617564569275 -0.894234342916148 38.9199366569519 26.4435279856697 0.67943399339902 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772784_at SPBC18H10.21c.S1 --- 3.43527016828619 --- --- --- --- 6.95780372619629 23.9019355773926 11.2988576889038 6.32265949249268 0.149657994508743 0.0676269978284836 0.274170011281967 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18H10.21c /DEF=dubious --- --- --- --- --- --- SPBC18H10.21c // ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.19062456053398 3.43527016828619 1.41422199061212 1.6239115292033 -1.10045523319068 Max fold change at or above threshold 4 3.43527016828619 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1772061_at SPAC222.07c.S1 --- 3.43396796869095 --- --- --- --- 1.3342707157135 1.72711324691772 3.77918910980225 0.818331241607666 0.725830018520355 0.633789002895355 0.533936023712158 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC222.07c /GEN=hri2 /DEF=serinethreonine protein kinase --- --- --- --- --- --- AF536224 // Schizosaccharomyces pombe eIF2 kinase Hri2p (hri2) mRNA, complete cds. // gb // 11 // --- /// SPAC222.07c // |hri2||eIF2alpha kinase family Hri1p|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.43396796869095 1.29442490686319 2.41942184682588 2.83240055057442 -1.63047754732208 Max fold change at or above threshold 1 3.43396796869095 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777383_at YOR092W.S1 Non-essential protein of unknown function 3.43386886677822 2637.58093261719 872.163543701172 ECM3 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay 16887 // ATPase activity // inferred from sequence similarity 834.186218261719 2864.48608398438 2410.67578125 910.140869140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR092W /GEN=ECM3 /DB_XREF=GI:6324666 /SEG=NC_001147:+495127,496968 /DEF=Non-essential protein of unknown function /NOTE=Ecm3p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: ATPase activity [goid GO:0016887] [evidence ISS] [pmid 9200815]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584] --- --- --- --- --- S0005618 // span:20-42,72-94,106-128,143-165,434-456,471-493,548-570,585-607 // numtm:8 S0005618 // ECM3 SGDID:S0005618, Chr XV from 495127-496968, Verified ORF // sgd // 11 // --- /// GENSCAN00000017531 // cdna:Genscan chromosome:SGD1:XV:495127:496968:1 // ensembl // 11 // --- /// GENEFINDER00000022780 // cdna:GeneFinder chromosome:SGD1:XV:495127:496968:1 // ensembl // 11 // --- /// YOR092W // cdna:known chromosome:SGD1:XV:495127:496968:1 gene:YOR092W // ensembl // 11 // --- --- No cerevisiae_gene 1.43324884704792 3.43386886677822 1.3833399659494 2.8898532827279 1.09105239239888 Max fold change at or above threshold 4 3.43386886677822 Max fold change at or above threshold -0.888325249263052 1.0706125376903 0.632753005143521 -0.815040293570766 1754.87223815918 1036.42896637381 0.590600810610007 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773304_at SPAC7D4.07c.S1 --- 3.43124501124289 --- --- --- --- 3.56304836273193 8.27627277374268 8.5166654586792 3.75826835632324 0.303710997104645 0.111571997404099 0.274170011281967 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC7D4.07c /GEN=trx2 /DEF=thioredoxin I (PMID 12020831) --- --- --- --- --- --- AJ003819 // Schizosaccharomyces pombe mRNA for thioredoxine 2. // gb // 11 // --- /// AF192765 // Schizosaccharomyces pombe thioredoxin mRNA, complete cds. // gb // 10 // --- /// SPAC7D4.07c // |trx1||thioredoxin |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.43124501124289 2.32280674613042 1.67833360589723 2.39027500938806 1.0547901610411 Max fold change at or above threshold 4 3.43124501124289 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769310_at SPCC18.05c.S1 --- 3.43066966881176 --- --- --- --- 5.14495182037354 6.12469863891602 8.18963241577148 7.91677236557007 0.5 0.633789002895355 0.432372987270355 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18.05c /DEF=WD repeat protein --- --- --- --- --- --- SPCC18.05c // |||WD repeat protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.65386533886649 1.19042876449548 -3.43066966881176 1.59178019575252 1.53874567575548 Max fold change at or above threshold 4 3.43066966881176 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777441_at SPBC2G2.05.S1 --- 3.43031469073561 --- --- --- --- 6.38188123703003 21.8918609619141 18.4247016906738 9.01054096221924 0.274170011281967 0.171387001872063 0.149657994508743 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G2.05 /GEN=rpl1603 /DEF=60S ribosomal protein L13L16 --- --- --- --- --- --- SPBC2G2.05 // |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 1.5408038464484 3.43031469073561 1.50558448569256 2.88703299330719 1.41189417783846 Max fold change at or above threshold 4 3.43031469073561 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775475_at SPBC36.05c.S1 --- 3.42979318294947 --- --- --- --- 3.57800936698914 1.04321432113647 6.54627656936646 3.50565695762634 0.567627012729645 0.725830018520355 0.5 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC36.05c /GEN=clr6 /DEF=transcriptional regulator --- --- --- --- --- --- SPBC36.05c // |clr6||histone deacetylase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.01118252173831 -3.42979318294947 1.59358934233093 1.82958620225052 -1.02063875907921 Max fold change at or above threshold 3 3.42979318294947 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772845_at SPBC428.01c.S1 --- 3.42861021712385 --- --- --- --- 1.86506080627441 1.93547379970551 6.39456653594971 1.13726603984833 0.466064006090164 0.398925989866257 0.219482004642487 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC428.01c /GEN=nup107 /DEF=nucleoporin (PMID 11309419) --- --- --- --- --- --- SPBC428.01c // |nup107|SPBC582.11c|nucleoporin |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.22165071807034 1.03775372534462 -3.24199179890417 3.42861021712385 -1.63995119956554 Max fold change at or above threshold 1 3.42861021712385 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778002_at SPCC1682.08c.S1 --- 3.4268256152306 --- --- --- --- 6.26501607894897 2.63005876541138 3.70202779769897 1.83069503307343 0.018554700538516 0.533936023712158 0.303710997104645 0.274170011281967 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1682.08c /DEF=RNA-binding protein --- --- --- --- --- --- SPCC1682.08c // |||RNA-binding protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.08706009807351 -2.38208216536524 -3.4268256152306 -1.69232010706215 -3.42220630184978 Max fold change at or above threshold 3 3.4268256152306 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1775660_at SPCC1450.14c.S1 --- 3.42602594918335 --- --- --- --- 7.56328058242798 11.6013669967651 6.96082019805908 4.29651880264282 0.0952147990465164 0.0676269978284836 0.0375977009534836 0.171387001872063 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1450.14c /DEF=involved in protein disulfide bond formation (predicted) --- --- --- --- --- --- SPCC1450.14c // |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.42602594918335 1.53390673138836 -1.62607020868313 -1.08655020058367 -1.76032758841315 Max fold change at or above threshold 4 3.42602594918335 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1776553_at YOL163W.S1 Hypothetical protein, member of the Dal5p subfamily of the major facilitator family 3.42589718606354 5.95362854003906 4.9216593503952 --- 6810 // transport // inferred from sequence similarity 16020 // membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity 7.61929082870483 6.8802433013916 5.02701377868652 2.22402787208557 0.295166015625 0.149657994508743 0.149657994508743 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL163W /GEN=AAD15 /DB_XREF=GI:6324410 /SEG=NC_001147:+9596,10105 /DEF=Hypothetical ORF, member of the Dal5p subfamily of the major facilitator family /NOTE=Yol163wp; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 10869563]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 10869563]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 10869563] --- --- --- --- --- S0005523 // span:20-42,55-77,92-114 // numtm:3 S0005523 // YOL163W SGDID:S0005523, Chr XV from 9596-10105, Uncharacterized ORF // sgd // 11 // --- /// YOL163W // cdna:known chromosome:SGD1:XV:9596:10105:1 gene:YOL163W // ensembl // 11 // --- --- No cerevisiae_gene -1.74145349166699 -1.10741590012722 -2.29259456938915 -1.51566937433293 -3.42589718606354 Max fold change at or above threshold 3 3.42589718606354 Max fold change at or above threshold 0.907533891335125 0.600100693313663 -0.170816274508805 -1.33681831013998 5.43764394521713 2.40392882769166 0.442090150055912 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779273_at SPBC32F12.03c.S1 --- 3.42576601746389 --- --- --- --- 2.84085702896118 2.63661789894104 7.86512422561646 1.20324742794037 0.466064006090164 0.601073980331421 0.274170011281967 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32F12.03c /GEN=gpx1 /DEF=glutathione peroxidase (PMID 10455235) --- --- --- --- --- --- SPBC32F12.03c // |gpx1||glutathione peroxidase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.42576601746389 -1.07746254400464 -2.75644839399428 2.76857446377458 -2.36099156581947 Max fold change at or above threshold 3 3.42576601746389 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772646_at YEL017W.S1 Protein of unknown function with a possible role in glutathione metabolism, as suggested by computational analysis of large-scale protein-protein interaction data; GFP-fusion protein localizes to the nuclear periphery 3.42518592068735 1028.93310546875 452.410766601563 GTT3 6749 // glutathione metabolism // RCA --- --- 409.63525390625 928.09326171875 1129.77294921875 495.186279296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL017W /GEN=GTT3 /DB_XREF=GI:6320820 /SEG=NC_001137:+123657,124670 /DEF=Protein of unknown function with a possible role in glutathione metabolism, as suggested by computational analysis of large-scale protein-protein interaction data; GFP-fusion protein localizes to the nuclear periphery /NOTE=Gtt3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: glutathione metabolism [goid GO:0006749] [evidence TAS] [pmid 14566057] --- --- --- --- --- S0000743 // span:241-263,314-336 // numtm:2 S0000743 // GTT3 SGDID:S0000743, Chr V from 123657-124670, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016790 // cdna:Genscan chromosome:SGD1:V:123657:124670:1 // ensembl // 11 // --- /// GENEFINDER00000019640 // cdna:GeneFinder chromosome:SGD1:V:123657:124670:1 // ensembl // 11 // --- /// YEL017W // cdna:known chromosome:SGD1:V:123657:124670:1 gene:YEL017W // ensembl // 11 // --- --- No cerevisiae_gene 3.42518592068735 2.26565768660906 -1.06507278089273 2.75799736093347 1.20884683282217 Max fold change at or above threshold 4 3.42518592068735 Max fold change at or above threshold -0.960468724461539 0.54378360868816 1.12893638075315 -0.712251264979772 740.671936035156 344.661594592258 0.465336376098228 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779874_at YNL041C.S1 Component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tethering complex that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments 3.42398368797968 168.184066772461 516.294982910156 COG6 6891 // intra-Golgi transport // inferred from physical interaction /// 6891 // intra-Golgi transport // inferred from genetic interaction 17119 // Golgi transport complex // inferred from physical interaction --- 493.503540039063 192.236740112305 144.131393432617 539.08642578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL041C /GEN=COG6 /DB_XREF=GI:6324287 /SEG=NC_001146:-549466,551985 /DEF=Conserved Oligomeric Golgi complex 6 Complexed with Cog8p; interacts with Cog2p /NOTE=Cog6p; go_component: Golgi transport complex [goid GO:0017119] [evidence IPI] [pmid 11703943]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: intra-Golgi transport [goid GO:0006891] [evidence IGI,IPI] [pmid 11703943] --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 2.40000009536743 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 0.800000011920929 --- S0004986 // COG6 SGDID:S0004986, Chr XIV from 551986-549467, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020002 // cdna:Genscan chromosome:SGD1:XIV:549467:551986:-1 // ensembl // 11 // --- /// GENEFINDER00000020436 // cdna:GeneFinder chromosome:SGD1:XIV:549467:551953:-1 // ensembl // 11 // --- /// YNL041C // cdna:known chromosome:SGD1:XIV:549467:551986:-1 gene:YNL041C // ensembl // 11 // --- --- No cerevisiae_gene -1.12830708974846 -2.56716556757443 -1.05806938071061 -3.42398368797968 1.09236587388731 Max fold change at or above threshold 4 3.42398368797968 Max fold change at or above threshold 0.745896975592374 -0.739677730447151 -0.976889684336461 0.970670439191238 342.239524841309 202.794782855398 0.592552198491485 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772918_at SPBC16H5.12c.S1 --- 3.42386725002402 --- --- --- --- 1.52886772155762 0.903374373912811 1.48326849937439 3.18501138687134 0.432372987270355 0.753906011581421 0.466064006090164 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16H5.12c /DEF=calcineurin-like phosphoesterase (Pfam) --- --- --- --- --- --- SPBC16H5.12c // |||calcineurin-like phosphoesterase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.42386725002402 -1.69239660290073 2.0591099995384 -1.03074239236016 2.0832484995016 Max fold change at or above threshold 1 3.42386725002402 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773541_at YDL138W.S1 Plasma membrane glucose receptor, highly similar to Snf3p; both Rgt2p and Snf3p serve as transmembrane glucose sensors generating an intracellular signal that induces expression of glucose transporter (HXT) genes 3.42384249705668 363.811538696289 122.265453338623 RGT2 7165 // signal transduction // traceable author statement /// 9749 // response to glucose stimulus // inferred from mutant phenotype 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from mutant phenotype 4872 // receptor activity // traceable author statement /// 5355 // glucose transporter activity // traceable author statement /// 5536 // glucose binding // traceable author statement 110.896675109863 379.692749023438 347.930328369141 133.634231567383 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL138W /GEN=RGT2 /DB_XREF=GI:6320063 /SEG=NC_001136:+213352,215643 /DEF=plasma membrane glucose sensor /NOTE=Rgt2p; go_component: plasma membrane [goid GO:0005886] [evidence IMP,ISS] [pmid 8901598]; go_function: glucose binding [goid GO:0005536] [evidence TAS] [pmid 10477308]; go_function: glucose transporter activity [goid GO:0005355] [evidence TAS] [pmid 10477308]; go_function: receptor activity [goid GO:0004872] [evidence TAS] [pmid 10477308]; go_process: response to glucose stimulus [goid GO:0009749] [evidence IMP] [pmid 8901598]; go_process: signal transduction [goid GO:0007165] [evidence TAS] [pmid 10477308] --- --- --- --- --- S0002297 // span:98-120,140-162,175-197,201-223,230-252,267-286,355-377,392-414,421-443,453-476,489-511,526-545 // numtm:12 S0002297 // RGT2 SGDID:S0002297, Chr IV from 213352-215643, Verified ORF // sgd // 11 // --- /// GENSCAN00000024996 // cdna:Genscan chromosome:SGD1:IV:213352:215643:1 // ensembl // 11 // --- /// GENEFINDER00000023569 // cdna:GeneFinder chromosome:SGD1:IV:213463:215643:1 // ensembl // 11 // --- /// YDL138W // cdna:known chromosome:SGD1:IV:213352:215643:1 gene:YDL138W // ensembl // 11 // --- --- No cerevisiae_gene 1.7259725516563 3.42384249705668 -1.30474089687462 3.137427952862 1.20503370759307 Max fold change at or above threshold 4 3.42384249705668 Max fold change at or above threshold -0.941412275086587 0.973560000452718 0.747276356977508 -0.779424082343639 243.038496017456 140.365517217671 0.577544378844366 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778379_at SPAC11D3.01c.S1 --- 3.42241969058837 --- --- --- --- 5.5653600692749 7.93734645843506 3.95922112464905 7.2783055305481 0.274170011281967 0.171387001872063 0.366210997104645 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11D3.01c /DEF=conserved fungal protein --- --- --- --- --- --- SPAC11D3.01c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.42241969058837 1.42620537748408 -1.22805624219865 -1.40567043215305 1.30778699669946 Max fold change at or above threshold 4 3.42241969058837 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771698_at SPAC24H6.13.S1 --- 3.42079030540255 --- --- --- --- 1.15779590606689 2.42164349555969 3.9605770111084 1.8009557723999 0.718017578125 0.567627012729645 0.194580003619194 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24H6.13 /DEF=DUF221 --- --- --- --- --- --- SPAC24H6.13 // |||DUF221|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.26030537628853 2.09159790846572 2.10659477429436 3.42079030540255 1.55550366257371 Max fold change at or above threshold 1 3.42079030540255 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772633_at SPAC26A3.04.S1 --- 3.42033133151991 --- --- --- --- 4.5383152961731 15.5225419998169 13.3577747344971 9.34208106994629 0.398925989866257 0.0561522990465164 0.030273400247097 0.0239257998764515 A M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26A3.04 /GEN=rpl2002 /DEF=60S ribosomal protein L20 --- --- --- --- --- --- AB009012 // Schizosaccharomyces pombe mRNA for ribosomal protein L18, partial cds. // gb // 10 // --- /// AF127913 // Schizosaccharomyces pombe ribosomal protein L20A (rpl20-1) mRNA, complete cds. // gb // 10 // --- /// SPAC26A3.04 // |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.58261974710474 3.42033133151991 1.61825837924244 2.94333334349002 2.0584909730322 Max fold change at or above threshold 4 3.42033133151991 Max fold change at or above threshold AAMAPP No 4 0 AMPP 1 2 1 No No 1 < x = 2
1776276_at SPAC6F6.17.S1 --- 3.41969598458942 --- --- --- --- 8.25763702392578 3.66194534301758 6.64923858642578 5.01653099060059 0.24609400331974 0.194580003619194 0.0676269978284836 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F6.17 /GEN=rif1 /DEF=essential --- --- --- --- --- --- AY034033 // Schizosaccharomyces pombe Tap1 (tap1) mRNA, complete cds. // gb // 11 // --- /// SPAC6F6.17 // |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.41969598458942 -2.25498642126679 -1.60024971906144 -1.24189212292419 -1.64608512125172 Max fold change at or above threshold 4 3.41969598458942 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771615_at YKL183C-A.S1 Identified by fungal homology and RT-PCR 3.41907495734922 66.1875019073486 29.8250122070313 --- --- --- --- 26.8030128479004 74.5564804077148 57.8185234069824 32.8470115661621 0.000244140625 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL183C-A /GEN=SPE1 /DB_XREF=GI:33578046 /SEG=NC_001143:-98400,98612 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ykl183c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028558 // span:13-35 // numtm:1 S0028558 // YKL183C-A SGDID:S0028558, Chr XI from 98612-98400, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YKL183C-A // cdna:known chromosome:SGD1:XI:98400:98612:-1 gene:YKL183C-A // ensembl // 11 // --- --- No cerevisiae_gene 3.41907495734922 2.78164551242064 -1.0771233455682 2.15716508196621 1.22549698993019 Max fold change at or above threshold 4 3.41907495734922 Max fold change at or above threshold -0.95443796165792 1.19512565181583 0.441687102299065 -0.68237479245698 48.0062570571899 22.2154242193575 0.462761014525507 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773497_at YNL269W.S1 Protein of unknown function, ORF exhibits genomic organization compatible with a translational readthrough-dependent mode of expression; readthrough is increased upon depletion of Sup35p 3.41825520855557 39.868673324585 18.749716758728 BSC4 --- --- --- 23.6840305328369 50.2076377868652 29.5297088623047 13.8154029846191 0.129638999700546 0.129638999700546 0.171387001872063 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL269W /GEN=BSC4 /DB_XREF=GI:6324060 /SEG=NC_001146:+137698,138093 /DEF=Bypass of Stop Codon transcript encoded by this ORF shows a high level of stop codon bypass /NOTE=Bsc4p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005213 // BSC4 SGDID:S0005213, Chr XIV from 137698-138093, Verified ORF // sgd // 11 // --- /// YNL269W // cdna:known chromosome:SGD1:XIV:137698:138093:1 gene:YNL269W // ensembl // 11 // --- --- No cerevisiae_gene -3.41825520855557 2.11989415050173 1.49952489491839 1.24681940522594 -1.71432064335761 Max fold change at or above threshold 4 3.41825520855557 Max fold change at or above threshold -0.366039445251646 1.35989878644185 0.014349225956651 -1.00820856714685 29.3091950416565 15.3676457053758 0.524328480653736 AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1775076_at YNL072W.S1 Ribonuclease H2 catalytic subunit, removes RNA primers during Okazaki fragment synthesis; cooperates with Rad27p nuclease 3.41745862699356 75.4660911560059 241.65943145752 RNH201 6260 // DNA replication // traceable author statement 5634 // nucleus // inferred from direct assay 4523 // ribonuclease H activity // inferred from sequence similarity 228.637008666992 66.9026412963867 84.029541015625 254.681854248047 0.000244141003349796 0.000732421991415322 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL072W /GEN=RNH201 /DB_XREF=GI:6324257 /SEG=NC_001146:+490316,491239 /DEF=Ribonuclease H2 catalytic subunit, removes RNA primers during Okazaki fragment synthesis; cooperates with Rad27p nuclease /NOTE=Rnh201p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11029655]; go_function: ribonuclease H activity [goid GO:0004523] [evidence ISS] [pmid 9462832]; go_process: DNA replication [goid GO:0006260] [evidence TAS] [pmid 9759502] --- --- --- --- --- --- S0005016 // RNH201 SGDID:S0005016, Chr XIV from 490316-491239, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020654 // cdna:GeneFinder chromosome:SGD1:XIV:490316:491239:1 // ensembl // 11 // --- /// GENSCAN00000019975 // cdna:Genscan chromosome:SGD1:XIV:490421:491239:1 // ensembl // 11 // --- /// YNL072W // cdna:known chromosome:SGD1:XIV:490316:491239:1 gene:YNL072W // ensembl // 11 // --- --- No cerevisiae_gene 2.20118747019729 -3.41745862699356 -1.2021655572436 -2.7209122637535 1.11391351615778 Max fold change at or above threshold 4 3.41745862699356 Max fold change at or above threshold 0.723967540459601 -0.946980583337748 -0.770035130014586 0.993048172892733 158.562761306763 96.7919740099726 0.610433201416785 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778703_at SPAC27E2.04c.S1 --- 3.4157039497324 --- --- --- --- 5.46084690093994 14.0565624237061 3.06629610061646 1.59874713420868 0.398925989866257 0.303710997104645 0.334473013877869 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27E2.04c /DEF=sequence orphan --- --- --- --- --- --- SPAC27E2.04c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.49041462498403 2.57406271933509 -2.29734274184812 -1.78092614729611 -3.4157039497324 Max fold change at or above threshold 3 3.4157039497324 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773325_at SPAC1B2.04.S1 --- 3.41378747896977 --- --- --- --- 2.04588007926941 2.96371531486511 0.599299192428589 4.44156408309937 0.633789002895355 0.601073980331421 0.753906011581421 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B2.04 /GEN=cox6 /DEF=cytochrome c oxidase subunit VI --- --- --- --- --- --- SPAC1B2.04 // |cox6||cytochrome c oxidase subunit VI|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.55119482166365 1.44862611689511 1.72450307031441 -3.41378747896977 2.17097968160747 Max fold change at or above threshold 2 3.41378747896977 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770596_at SPCC1620.01c.S1 --- 3.41302257755243 --- --- --- --- 0.710222244262695 0.736509203910828 0.481341391801834 1.8794196844101 0.466064006090164 0.870360970497131 0.780517995357513 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1620.01c /GEN=lsm2 /DEF=U6 snRNA-associated protein core protein --- --- --- --- --- --- SPCC1620.01c // |lsm2||U6 snRNA-associated protein core protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 3.41302257755243 1.03701230123455 2.71422742311896 -1.47550627550246 2.64624165124704 Max fold change at or above threshold 0 3.41302257755243 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776147_at SPAC25B8.13c.S1 --- 3.41160860932975 --- --- --- --- 1.96371245384216 2.92410802841187 0.936472833156586 0.756587326526642 0.780517995357513 0.780517995357513 0.962401986122131 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25B8.13c /GEN=isp7 /DEF=2 OG-Fe(II) oxygenase superfamily --- --- --- --- --- --- D14064 // Schizosaccharomyces pombe mRNA for ORF. // gb // 11 // --- /// SPAC25B8.13c // |isp7||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.41160860932975 1.48907138756013 -2.89865366724389 -2.09692410106873 -2.59548684598937 Max fold change at or above threshold 1 3.41160860932975 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769933_at SPBC543.04.S1 --- 3.41083314311662 --- --- --- --- 6.27538108825684 21.4042778015137 11.8467321395874 5.40129613876343 0.432372987270355 0.466064006090164 0.601073980331421 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC543.04 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC543.04 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.25260774193666 3.41083314311662 2.76613769704146 1.88781079156392 -1.16182874018337 Max fold change at or above threshold 4 3.41083314311662 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778862_s_at YCL066W.S1 Transcriptional co-activator involved in regulation of mating-type-specific gene expression; targets the transcription factor Mcm1p to the promoters of alpha-specific genes; one of two genes encoded by the alpha mating type cassette /// Silenced copy of ALPHA1, encoding a transcriptional coactivator involved in the regulation of mating-type alpha-specific gene expression 3.41032280486762 39.0600128173828 131.089164733887 MATALPHA1 /// HMLALPHA1 6357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 7532 // regulation of transcription, mating-type specific // traceable author statement 5634 // nucleus // traceable author statement 3713 // transcription coactivator activity // traceable author statement 114.991561889648 33.7186737060547 44.4013519287109 147.186767578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL066W /GEN=HMLALPHA1 /DB_XREF=GI:6319786 /SEG=NC_001135:+13282,13809 /DEF=Silenced copy of ALPHA1, encoding a transcriptional coactivator involved in the regulation of mating-type alpha-specific gene expression /NOTE=Hmlalpha1p; go_component: nucleus [goid GO:0005634] [evidence TAS]; go_function: transcription coactivator activity [goid GO:0003713] [evidence TAS]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence TAS]; go_process: regulation of transcription, mating-type specific [goid GO:0007532] [evidence TAS] --- --- --- --- --- --- S0000571 // HMLALPHA1 SGDID:S0000571, Chr III from 13282-13809, Verified ORF // sgd // 11 // --- /// S0000636 // MATALPHA1 SGDID:S0000636, Chr III from 200437-200964, Verified ORF // sgd // 11 // --- /// YCL066W // cdna:known chromosome:SGD1:III:13282:13809:1 gene:YCL066W // ensembl // 11 // --- /// YCR040W // cdna:known chromosome:SGD1:III:200437:200964:1 gene:YCR040W // ensembl // 11 // --- YCL065W // ensembl // 1 // Cross Hyb Matching Probes /// YCR041W // ensembl // 1 // Cross Hyb Matching Probes /// YCR097W-A // ensembl // 1 // Cross Hyb Matching Probes No cerevisiae_gene 2.42981005925224 -3.41032280486762 1.00890953090112 -2.58982118549621 1.27997885374731 Max fold change at or above threshold 4 3.41032280486762 Max fold change at or above threshold 0.54485561325277 -0.935307141292516 -0.740751456397344 1.13120298443709 85.0745887756348 54.9080754356376 0.645411000227641 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769641_at SPAC23G3.04.S1 --- 3.4099514714534 --- --- --- --- 0.537882626056671 1.83415365219116 0.687893092632294 0.472041845321655 0.888427972793579 0.828612983226776 0.888427972793579 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23G3.04 /DEF=hypothetical protein --- --- --- --- --- --- SPAC23G3.04 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.27999539868631 3.4099514714534 1.20431556442901 1.27889070832308 -1.13948081380402 Max fold change at or above threshold 0 3.4099514714534 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775889_at YBR289W.S1 One of 11 subunits of the SWI/SNF chromatin remodeling complex involved in transcriptional regulation; functions interdependently in transcriptional activation with Snf2p and Snf6p 3.40993373592177 328.358444213867 921.568878173828 SNF5 6338 // chromatin remodeling // traceable author statement 16514 // SWI/SNF complex // traceable author statement /// 16585 // chromatin remodeling complex // traceable author statement 16251 // general RNA polymerase II transcription factor activity // traceable author statement 910.313903808594 266.959411621094 389.757476806641 932.823852539063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR289W /GEN=SNF5 /DB_XREF=GI:6319766 /SEG=NC_001134:+779625,782342 /DEF=Involved in global regulation of transcription /NOTE=Snf5p; go_component: SWI/SNF complex [goid GO:0016514] [evidence TAS] [pmid 9726966]; go_component: nucleosome remodeling complex [goid GO:0005679] [evidence TAS] [pmid 9048886]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9048886]; go_process: chromatin remodeling [goid GO:0006338] [evidence TAS] [pmid 9048886] --- --- --- --- --- --- S0000493 // SNF5 SGDID:S0000493, Chr II from 779663-782380, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022157 // cdna:GeneFinder chromosome:SGD1:II:779747:782419:1 // ensembl // 11 // --- /// GENSCAN00000021369 // cdna:Genscan chromosome:SGD1:II:780509:782419:1 // ensembl // 11 // --- /// YBR289W // cdna:known chromosome:SGD1:II:779663:782380:1 gene:YBR289W // ensembl // 11 // --- --- No cerevisiae_gene -2.06359937906267 -3.40993373592177 -1.28995361399496 -2.33559061205695 1.02472767760252 Max fold change at or above threshold 4 3.40993373592177 Max fold change at or above threshold 0.824088199457719 -1.03391213101908 -0.679272739412618 0.889096670973975 624.963661193848 346.261774895597 0.554051053519086 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773088_at YMR229C.S1 Protein required for the synthesis of both 18S and 5.8S rRNA; C-terminal region is crucial for the formation of 18S rRNA and N-terminal region is required for the 5.8S rRNA; component of small ribosomal subunit (SSU) processosome 3.4098468956283 449.200866699219 371.324035644531 RRP5 6364 // rRNA processing // traceable author statement /// 6365 // 35S primary transcript processing // inferred from physical interaction /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5730 // nucleolus // traceable author statement /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction 3723 // RNA binding // traceable author statement /// 30515 // snoRNA binding // inferred from physical interaction /// 42134 // rRNA primary transcript binding // inferred from direct assay 375.837860107422 372.310791015625 526.090942382813 366.810211181641 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR229C /GEN=RRP5 /DB_XREF=GI:6323885 /SEG=NC_001145:-725933,731122 /DEF=Part of small ribosomal subunit (SSU) processosome (contains U3 snoRNA). Rrp5p is the only ribosomal RNA processing trans-acting factor that is required for the synthesis of both 18S and 5.8S rRNAs. /NOTE=Rrp5p; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 10690410]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: RNA binding [goid GO:0003723] [evidence TAS] [pmid 10690410]; go_function: snoRNA binding [goid GO:0030515] [evidence IPI] [pmid 12068309]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IPI] [pmid 12068309]; go_process: rRNA processing [goid GO:0006364] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0004842 // RRP5 SGDID:S0004842, Chr XIII from 731122-725933, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018908 // cdna:Genscan chromosome:SGD1:XIII:725933:731122:-1 // ensembl // 11 // --- /// GENEFINDER00000021798 // cdna:GeneFinder chromosome:SGD1:XIII:725933:731122:-1 // ensembl // 11 // --- /// YMR229C // cdna:known chromosome:SGD1:XIII:725933:731122:-1 gene:YMR229C // ensembl // 11 // --- --- No cerevisiae_gene 3.4098468956283 -1.00947345383725 1.06765336725277 1.39978165646336 -1.02461122577995 Max fold change at or above threshold 4 3.4098468956283 Max fold change at or above threshold -0.445289745174624 -0.49091316867903 1.49826730660973 -0.562064392756076 410.262451171875 77.3082951886826 0.18843619485005 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774705_at YKR080W.S1 NAD-dependent 5,10-methylenetetrahydrafolate dehydrogenase, plays a catalytic role in oxidation of cytoplasmic one-carbon units; expression is regulated by Bas1p and Bas2p, repressed by adenine, and may be induced by inositol and choline 3.40762288257261 311.112655639648 271.765991210938 MTD1 6730 // one-carbon compound metabolism // inferred from direct assay /// 6730 // one-carbon compound metabolism // inferred from mutant phenotype /// 9113 // purine base biosynthesis // inferred from direct assay /// 9113 // purine base biosynthesis // inferred from mutant phenotype 5829 // cytosol // inferred from direct assay 4487 // methylenetetrahydrofolate dehydrogenase (NAD+) activity // inferred from mutant phenotype /// 4487 // methylenetetrahydrofolate dehydrogenase (NAD+) activity // inferred from sequence similarity 233.184631347656 285.975250244141 336.250061035156 310.347351074219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR080W /GEN=MTD1 /DB_XREF=GI:6322933 /SEG=NC_001143:+590037,590999 /DEF=NAD-dependent 5,10-methylenetetrahydrafolate dehydrogenase /NOTE=Mtd1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 8608153]; go_function: methylenetetrahydrofolate dehydrogenase (NAD+) activity [goid GO:0004487] [evidence IMP,ISS] [pmid 8416923]; go_process: one-carbon compound metabolism [goid GO:0006730] [evidence IDA,IMP] [pmid 8608153]; go_process: purine base biosynthesis [goid GO:0009113] [evidence IDA,IMP] [pmid 8608153] --- --- --- --- --- --- S0001788 // MTD1 SGDID:S0001788, Chr XI from 590037-590999, Verified ORF // sgd // 11 // --- /// GENSCAN00000018482 // cdna:Genscan chromosome:SGD1:XI:590037:590999:1 // ensembl // 11 // --- /// GENEFINDER00000023154 // cdna:GeneFinder chromosome:SGD1:XI:590037:590999:1 // ensembl // 11 // --- /// YKR080W // cdna:known chromosome:SGD1:XI:590037:590999:1 gene:YKR080W // ensembl // 11 // --- --- No cerevisiae_gene 3.40762288257261 1.22638978645972 2.42504469968174 1.4419906624714 1.33090825617714 Max fold change at or above threshold 4 3.40762288257261 Max fold change at or above threshold -1.3261433681944 -0.124387309486711 1.02009744427148 0.430433233409625 291.439323425293 43.9278991056246 0.150727426173445 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773907_at YCL049C.S1 Hypothetical protein 3.40477516793518 153.362194061279 64.4188766479492 --- --- 5624 // membrane fraction // inferred from direct assay --- 58.9064407348633 106.161201477051 200.563186645508 69.9313125610352 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL049C /GEN=APA1 /DB_XREF=GI:10383758 /SEG=NC_001135:-39786,40724 /DEF=Hypothetical ORF /NOTE=Ycl049cp; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 11935221]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000554 // YCL049C SGDID:S0000554, Chr III from 40724-39786, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022428 // cdna:Genscan chromosome:SGD1:III:39786:40724:-1 // ensembl // 11 // --- /// GENEFINDER00000023319 // cdna:GeneFinder chromosome:SGD1:III:39786:40724:-1 // ensembl // 11 // --- /// YCL049C // cdna:known chromosome:SGD1:III:39786:40724:-1 gene:YCL049C // ensembl // 11 // --- --- No cerevisiae_gene 1.0888514872131 1.80220023740494 1.35087142378855 3.40477516793518 1.18715902180875 Max fold change at or above threshold 4 3.40477516793518 Max fold change at or above threshold -0.776603976875924 -0.0424057204529304 1.42431999828874 -0.605310300959882 108.890535354614 64.3623984785965 0.591074313933651 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775190_at YMR209C.S1 Hypothetical protein 3.4028621797445 219.40242767334 721.963470458984 --- --- --- --- 703.021118164063 206.59700012207 232.207855224609 740.905822753906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR209C /GEN=ERG12 /DB_XREF=GI:6323865 /SEG=NC_001145:-685910,687283 /DEF=Hypothetical ORF /NOTE=Ymr209cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004822 // span:2-21 // numtm:1 S0004822 // YMR209C SGDID:S0004822, Chr XIII from 687283-685910, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018890 // cdna:Genscan chromosome:SGD1:XIII:685910:687283:-1 // ensembl // 11 // --- /// YMR209C // cdna:known chromosome:SGD1:XIII:685910:687283:-1 gene:YMR209C // ensembl // 11 // --- --- No cerevisiae_gene -1.79935352734387 -3.4028621797445 -1.00371193010344 -3.02755097360529 1.05388843039137 Max fold change at or above threshold 4 3.4028621797445 Max fold change at or above threshold 0.799089227221906 -0.908280536432122 -0.820196178653798 0.929387487864014 470.682949066162 290.753724594238 0.617727336779663 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772524_at YML108W.S1 defines a new subfamily of the split beta-alpha-beta sandwiches. 3.40054726317343 146.118095397949 154.614635467529 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 108.307609558105 151.005416870117 141.230773925781 200.921661376953 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML108W /GEN=ZDS2 /DB_XREF=GI:6323528 /SEG=NC_001145:+54793,55110 /DEF=defines a new subfamily of the split beta-alpha-beta sandwiches. /NOTE=Yml108wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004576 // YML108W SGDID:S0004576, Chr XIII from 54793-55110, Uncharacterized ORF // sgd // 11 // --- /// YML108W // cdna:known chromosome:SGD1:XIII:54793:55110:1 gene:YML108W // ensembl // 11 // --- --- No cerevisiae_gene 3.40054726317343 1.39422721530111 1.60322229458171 1.30397831234575 1.85510198403152 Max fold change at or above threshold 4 3.40054726317343 Max fold change at or above threshold -1.09714623826781 0.0166703190809715 -0.238311372929967 1.3187872921168 150.366365432739 38.3346853934776 0.254941889984201 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779232_at YMR068W.S1 Component of a complex containing the Tor2p kinase and other proteins, which may have a role in regulation of cell growth 3.39898865239989 249.950019836426 855.138702392578 AVO2 1558 // regulation of cell growth // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay --- 826.007507324219 243.015670776367 256.884368896484 884.269897460938 0.000244141003349796 0.00195312988944352 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR068W /GEN=AVO2 /DB_XREF=GI:6323713 /SEG=NC_001145:+406303,407583 /DEF=Component of a complex containing the Tor2p kinase and other proteins, which may have a role in regulation of cell growth /NOTE=Avo2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND] [pmid 12408816]; go_process: regulation of cell growth [goid GO:0001558] [evidence IPI] [pmid 12408816] --- --- --- --- --- --- S0004672 // AVO2 SGDID:S0004672, Chr XIII from 406303-407583, Verified ORF // sgd // 11 // --- /// GENSCAN00000018770 // cdna:Genscan chromosome:SGD1:XIII:406303:407583:1 // ensembl // 11 // --- /// GENEFINDER00000021800 // cdna:GeneFinder chromosome:SGD1:XIII:406552:407583:1 // ensembl // 11 // --- /// YMR068W // cdna:known chromosome:SGD1:XIII:406303:407583:1 gene:YMR068W // ensembl // 11 // --- --- No cerevisiae_gene -1.63217035742912 -3.39898865239989 -1.1381490531871 -3.21548372473014 1.07053494020346 Max fold change at or above threshold 4 3.39898865239989 Max fold change at or above threshold 0.780742697913692 -0.883710540618728 -0.844115132839184 0.94708297554422 552.544361114502 350.26026748693 0.633904338070598 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774203_at SPCC16C4.07.S1 --- 3.39836766811495 --- --- --- --- 6.44645071029663 21.9074096679688 12.5966958999634 4.57304763793945 0.194580003619194 0.171387001872063 0.111571997404099 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16C4.07 /GEN=scw1 /DEF=RNA-binding protein --- --- --- --- --- --- SPCC16C4.07 // |scw1||RNA-binding protein Scw1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.34661943798839 3.39836766811495 2.35718508812697 1.95405137897715 -1.40966183181973 Max fold change at or above threshold 4 3.39836766811495 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1770944_at SPBC1271.08c.S1 --- 3.39701276416325 --- --- --- --- 7.7142333984375 5.37914752960205 8.27929592132568 2.86275959014893 0.0805663987994194 0.129638999700546 0.0375977009534836 0.334473013877869 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1271.08c /DEF=hypothetical protein --- --- --- --- --- --- SPBC1271.08c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.39701276416325 -1.43409961448077 -1.13166906693431 1.07324934231347 -2.69468432661375 Max fold change at or above threshold 4 3.39701276416325 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1777793_at YGL117W.S1 Hypothetical protein 3.39450464823026 1093.46630859375 793.446044921875 --- --- --- --- 754.983764648438 1066.13354492188 1120.79907226563 831.908325195313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL117W /GEN=ABC1 /DB_XREF=GI:6321321 /SEG=NC_001139:+288516,289313 /DEF=Hypothetical ORF /NOTE=Ygl117wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003085 // YGL117W SGDID:S0003085, Chr VII from 288518-289315, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019262 // cdna:Genscan chromosome:SGD1:VII:288518:289315:1 // ensembl // 11 // --- /// GENEFINDER00000021566 // cdna:GeneFinder chromosome:SGD1:VII:288518:289315:1 // ensembl // 11 // --- /// YGL117W // cdna:known chromosome:SGD1:VII:288518:289315:1 gene:YGL117W // ensembl // 11 // --- --- No cerevisiae_gene 3.39450464823026 1.41212777657322 1.01438682116735 1.48453400555909 1.10188902616031 Max fold change at or above threshold 4 3.39450464823026 Max fold change at or above threshold -1.06211837615458 0.691336655625319 0.999399042497534 -0.628617321968269 943.456176757813 177.449535137262 0.188084554967956 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775784_at SPCC1739.01.S1 --- 3.39299735096196 --- --- --- --- 6.22433376312256 1.8344646692276 6.29317998886108 3.71649813652039 0.194580003619194 0.850341975688934 0.274170011281967 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1739.01 /DEF=zinc finger protein --- --- --- --- --- --- SPCC1739.01 // ||SPCC1906.05|zinc finger protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.61626520699718 -3.39299735096196 -2.76155629431893 1.011060818452 -1.67478457797645 Max fold change at or above threshold 3 3.39299735096196 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779581_at SPAC19E9.03.S1 --- 3.39235927396491 --- --- --- --- 3.71001362800598 1.10420489311218 1.0936381816864 4.027587890625 0.5 0.567627012729645 0.828612983226776 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19E9.03 /GEN=pas1 /DEF=cyclin (PMID 10982385) --- --- --- --- --- --- AB045126 // Schizosaccharomyces pombe mRNA for Pcl-like cyclin Pas1, complete cds. // gb // 11 // --- /// SPAC19E9.03 // |pas1|SPAC57A10.01|cyclin |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.14701372531155 -3.35989602214981 1.26199644301351 -3.39235927396491 1.08559921727018 Max fold change at or above threshold 2 3.39235927396491 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775372_at SPBC713.11c.S1 --- 3.39117648833984 --- --- --- --- 11.6544857025146 15.4201097488403 8.13406658172607 11.2923879623413 0.171387001872063 0.0561522990465164 0.129638999700546 0.0107421996071935 A M A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC713.11c /DEF=UPF0057 family --- --- --- --- --- --- SPBC713.11c // |||UPF0057 family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.39117648833984 1.32310512385057 1.25131437749363 -1.43279939811379 -1.03206564823852 Max fold change at or above threshold 4 3.39117648833984 Max fold change at or above threshold AAMAAP No 4 0 AMAP 2 1 1 No No x = 1
1777644_at SPAC19B12.02c.S1 --- 3.39087149389122 --- --- --- --- 0.800345182418823 2.71386766433716 1.77024149894714 0.748458087444305 0.932372987270355 0.753906011581421 0.850341975688934 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19B12.02c /DEF=GPI anchored protein (predicted) (pers. comm. Birgit Eisenhaber) --- --- --- --- --- --- D89203 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1111. // gb // 11 // --- /// SPAC19B12.02c // |||GPI anchored protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.62663769926747 3.39087149389122 1.24561201123301 2.21184751009193 -1.0693253180705 Max fold change at or above threshold 1 3.39087149389122 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771745_at YFL004W.S1 Vacuolar membrane protein involved in vacuolar polyphosphate accumulation; functions as a regulator of vacuolar H+-ATPase activity and vacuolar transporter chaperones; involved in protein localization and non-autophagic vacuolar fusion 3.39056396991627 1266.12225341797 406.212905883789 VTC2 8104 // protein localization // inferred from mutant phenotype /// 42144 // vacuole fusion, non-autophagic // inferred from mutant phenotype /// 42144 // vacuole fusion, non-autophagic // inferred from physical interaction 5774 // vacuolar membrane // inferred from direct assay --- 377.117279052734 1278.64025878906 1253.60424804688 435.308532714844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL004W /GEN=VTC2 /DB_XREF=GI:14318518 /SEG=NC_001138:+131805,134291 /DEF=Phosphate metabolism; transcription is regulated by PHO system /NOTE=Vtc2p; go_component: vacuolar membrane [goid GO:0005774] [evidence IDA] [pmid 11823419]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein localization [goid GO:0008104] [evidence IMP] [pmid 10480897]; go_process: vacuole fusion, non-autophagic [goid GO:0042144] [evidence IMP,IPI] [pmid 11823419] --- --- --- --- --- S0001890 // span:694-716,723-745,765-787 // numtm:3 S0001890 // VTC2 SGDID:S0001890, Chr VI from 131805-134291, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018599 // cdna:GeneFinder chromosome:SGD1:VI:131805:134291:1 // ensembl // 11 // --- /// GENSCAN00000023238 // cdna:Genscan chromosome:SGD1:VI:131805:134291:1 // ensembl // 11 // --- /// YFL004W // cdna:known chromosome:SGD1:VI:131805:134291:1 gene:YFL004W // ensembl // 11 // --- --- No cerevisiae_gene 1.50386566601219 3.39056396991627 1.48185047978216 3.32417610562887 1.15430545587377 Max fold change at or above threshold 4 3.39056396991627 Max fold change at or above threshold -0.923378575304644 0.890032729619122 0.839672854240954 -0.806327008555432 836.167579650879 497.142031313314 0.59454832190562 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771501_at YPR017C.S1 Nucleotide release factor functioning in the post-Golgi secretory pathway, required for ER-to-Golgi transport, binds zinc, found both on membranes and in the cytosol; guanine nucleotide dissociation stimulator 3.38905816529545 69.0971221923828 228.217651367188 DSS4 45045 // secretory pathway // inferred from genetic interaction /// 45045 // secretory pathway // inferred from physical interaction 5624 // membrane fraction // inferred from direct assay /// 5625 // soluble fraction // inferred from direct assay 5085 // guanyl-nucleotide exchange factor activity // inferred from direct assay /// 8270 // zinc ion binding // inferred from direct assay 233.762298583984 69.2186508178711 68.9755935668945 222.673004150391 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR017C /GEN=DSS4 /DB_XREF=GI:6325274 /SEG=NC_001148:-593481,593912 /DEF=Nucleotide release factor functioning in the post-Golgi secretory pathway, required for ER-to-Golgi transport, binds zinc, found both on membranes and in the cytosol; guanine nucleotide dissociation stimulator /NOTE=Dss4p; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 9218467]; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 9218467]; go_function: guanyl-nucleotide exchange factor activity [goid GO:0005085] [evidence IDA] [pmid 9218467]; go_function: zinc ion binding [goid GO:0008270] [evidence IDA] [pmid 9218467]; go_process: secretory pathway [goid GO:0045045] [evidence IGI,IPI] [pmid 9218467] --- --- --- --- --- --- S0006221 // DSS4 SGDID:S0006221, Chr XVI from 593914-593483, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017198 // cdna:Genscan chromosome:SGD1:XVI:593483:593914:-1 // ensembl // 11 // --- /// YPR017C // cdna:known chromosome:SGD1:XVI:593483:593914:-1 gene:YPR017C // ensembl // 11 // --- --- No cerevisiae_gene -1.17979374964864 -3.37715768542011 1.65697827510799 -3.38905816529545 -1.04980080309198 Max fold change at or above threshold 4 3.38905816529545 Max fold change at or above threshold 0.92525640216438 -0.863654017969149 -0.866296524409623 0.804694140214392 148.657386779785 91.9798140332993 0.618736922703709 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773004_at SPBC29A10.13.S1 --- 3.38792271405757 --- --- --- --- 1.40022706985474 1.44681882858276 4.07702302932739 3.08645462989807 0.466064006090164 0.753906011581421 0.5 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A10.13 /GEN=atp7 /DEF=F0-ATPase subunit D --- --- --- --- --- --- SPBC29A10.13 // |atp7||F0-ATPase subunit D|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- SPNCRNA.25 // sanger // 6 // Cross Hyb Matching Probes /// AB084837 // gb // 6 // Negative Strand Matching Probes No No -3.38792271405757 1.03327443079133 -1.50526006809834 2.91168705212245 2.20425293607434 Max fold change at or above threshold 2 3.38792271405757 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771283_at SPCC1450.06c.S1 --- 3.38648438701155 --- --- --- --- 1.45137226581573 1.49624216556549 2.41880297660828 0.90525096654892 0.828612983226776 0.904784977436066 0.780517995357513 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1450.06c /GEN=grx3 /DEF=arsenate reductase (glutaredoxin) activity --- --- --- --- --- --- SPCC1450.06c // |grx3||arsenate reductase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.38648438701155 1.03091550032103 2.34520134837039 1.66656276516956 -1.60328165276508 Max fold change at or above threshold 0 3.38648438701155 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770284_at YLR185W.S1 Protein component of the large (60S) ribosomal subunit, has similarity to Rpl37Bp and to rat L37 ribosomal protein 3.38586890595714 2149.69219970703 5305.16430664063 RPL37A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 5979.744140625 1766.08850097656 2533.2958984375 4630.58447265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR185W /GEN=RPL37A /DB_XREF=GI:6323214 /SEG=NC_001144:+522665,523290 /DEF=Protein component of the large (60S) ribosomal subunit, has similarity to Rpl37Bp and to rat L37 ribosomal protein /NOTE=Rpl37ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004175 // RPL37A SGDID:S0004175, Chr XII from 522665-522671,523031-523290, intron sequence removed, Verified ORF // sgd // 11 // --- /// YLR185W // cdna:known chromosome:SGD1:XII:522665:523290:1 gene:YLR185W // ensembl // 11 // --- --- No cerevisiae_gene -1.04757712446635 -3.38586890595714 -1.53410208075907 -2.36046019902895 -1.29135839675004 Max fold change at or above threshold 4 3.38586890595714 Max fold change at or above threshold 1.16769690719207 -1.01684243109672 -0.619089296120693 0.468234820025339 3727.42825317383 1928.85317549333 0.517475600999416 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778542_at YEL048C.S1 Hypothetical protein 3.38454650843439 31.6083173751831 99.051197052002 --- --- 30136 // clathrin-coated vesicle // inferred from direct assay --- 99.6382751464844 29.4391803741455 33.7774543762207 98.4641189575195 0.00122069998178631 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL048C /GEN=PAU2 /DB_XREF=GI:6320787 /SEG=NC_001137:-64709,65167 /DEF=Hypothetical ORF /NOTE=Yel048cp; go_component: clathrin-coated vesicle [goid GO:0030136] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000774 // YEL048C SGDID:S0000774, Chr V from 65167-64709, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YEL048C // cdna:known chromosome:SGD1:V:64709:65167:-1 gene:YEL048C // ensembl // 11 // --- --- No cerevisiae_gene 1.35768513240797 -3.38454650843439 -1.1631528223257 -2.9498455992773 -1.01192471126941 Max fold change at or above threshold 4 3.38454650843439 Max fold change at or above threshold 0.880126014564096 -0.920711014561928 -0.809420057167557 0.850005057165389 65.3297572135925 38.981370127872 0.596686284940938 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773694_at SPAPB24D3.05c.S1 --- 3.382629891459 --- --- --- --- 5.18063592910767 2.56240224838257 4.72178220748901 4.67839288711548 0.171387001872063 0.696289002895355 0.0561522990465164 0.0805663987994194 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB24D3.05c /DEF=pseudo ring cleavage dioxygenase --- --- --- --- --- --- SPAPB24D3.05c // |||pseudo ring cleavage dioxygenase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.382629891459 -2.02178870720933 -2.29218210227261 -1.09717807841516 -1.10735375461419 Max fold change at or above threshold 4 3.382629891459 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1779037_at SPBC9B6.05c.S1 --- 3.38153666357063 --- --- --- --- 1.39601910114288 2.30834937095642 4.1620922088623 2.09571099281311 0.753906011581421 0.665526986122131 0.466064006090164 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC9B6.05c /GEN=lsm3 /DEF=U6 snRNA-associated protein --- --- --- --- --- --- SPBC9B6.05c // |lsm3||U6 snRNA-associated protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.38153666357063 1.65352276990095 1.49587183707968 2.98140061654952 1.50120509891119 Max fold change at or above threshold 1 3.38153666357063 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773892_at YNL119W.S1 Protein with a role in urmylation and in invasive and pseudohyphal growth; inhibits replication of Brome mosaic virus in S. cerevisiae, which is a model system for studying replication of positive-strand RNA viruses in their natural hosts 3.38095799532344 252.595947265625 801.595306396484 NCS2 1403 // invasive growth (sensu Saccharomyces) // inferred from mutant phenotype /// 6464 // protein modification // inferred from mutant phenotype /// 7124 // pseudohyphal growth // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 798.987915039063 268.871917724609 236.319976806641 804.202697753906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL119W /GEN=NCS2 /DB_XREF=GI:6324209 /SEG=NC_001146:+401040,402521 /DEF=plays a role in invasive growth /NOTE=Ncs2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005063 // NCS2 SGDID:S0005063, Chr XIV from 401040-402521, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000019937 // cdna:Genscan chromosome:SGD1:XIV:401160:402521:1 // ensembl // 10 // --- /// YNL119W // cdna:known chromosome:SGD1:XIV:401040:402521:1 gene:YNL119W // ensembl // 10 // --- GENEFINDER00000020544 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.08675904318912 -2.97163021635239 -1.27840463414939 -3.38095799532344 1.00652673540699 Max fold change at or above threshold 4 3.38095799532344 Max fold change at or above threshold 0.857027041326096 -0.81394254641912 -0.916548963828818 0.873464468921842 527.095626831055 317.250535977608 0.601884211950204 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775691_at SPAC23H3.02c.S1 --- 3.37887959699599 --- --- --- --- 3.24006938934326 9.45469093322754 4.30167102813721 1.30154502391815 0.567627012729645 0.171387001872063 0.466064006090164 0.59228515625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H3.02c /GEN=ini1 /DEF=RING finger-like protein (PMID 14762117) --- --- --- --- --- --- AY279206 // Schizosaccharomyces pombe transcription-splicing co-factor Ini1 (ini1) mRNA, complete cds. // gb // 11 // --- /// SPAC23H3.02c // |ini1||RING finger-like protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.89398362505104 2.91805199120872 -3.37887959699599 1.32764780973074 -2.48940246384209 Max fold change at or above threshold 3 3.37887959699599 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775706_at YML103C.S1 Subunit of the nuclear pore complex (NPC), involved in the structural organization of the complex and of the nuclear envelope, also involved in nuclear envelope permeability, interacts with Pom152p and Nic96p 3.37818837762558 277.332160949707 763.468322753906 NUP188 6406 // mRNA-nucleus export // traceable author statement /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6999 // nuclear pore organization and biogenesis // inferred from mutant phenotype 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement 705.517395019531 208.84489440918 345.819427490234 821.419250488281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML103C /GEN=NUP188 /DB_XREF=GI:6323533 /SEG=NC_001145:-62582,67549 /DEF=Subunit of the nuclear pore complex (NPC), involved in the structural organization of the complex and of the nuclear envelope, also involved in nuclear envelope permeability, interacts with Pom152p and Nic96p /NOTE=Nup188p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence TAS] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence IMP] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0004571 // NUP188 SGDID:S0004571, Chr XIII from 67549-62582, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018631 // cdna:Genscan chromosome:SGD1:XIII:62582:67549:-1 // ensembl // 11 // --- /// YML103C // cdna:known chromosome:SGD1:XIII:62582:67549:-1 gene:YML103C // ensembl // 11 // --- --- No cerevisiae_gene -1.27585476894332 -3.37818837762558 1.04963104270997 -2.04013233189293 1.16427923150717 Max fold change at or above threshold 4 3.37818837762558 Max fold change at or above threshold 0.638175677587216 -1.07406062354455 -0.60185254360507 1.03773748956241 520.400241851807 290.072404306611 0.557402516329373 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777750_at SPAPB8E5.10.S1 --- 3.37816281674776 --- --- --- --- 1.61772477626801 5.46493768692017 4.33159637451172 0.507153153419495 0.601073980331421 0.366210997104645 0.0375977009534836 0.398925989866257 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB8E5.10 /DEF=sequence orphan --- --- --- --- --- --- SPAPB8E5.10 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.10748280511367 3.37816281674776 2.12034478715864 2.67758548181753 -3.18981507925259 Max fold change at or above threshold 2 3.37816281674776 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1773845_at SPAP7G5.05.S1 --- 3.37737252755958 --- --- --- --- 14.9404058456421 18.651050567627 50.4593162536621 12.7461404800415 0.519531011581421 0.403809010982513 0.230957001447678 0.558104991912842 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP7G5.05 /GEN=rpl1002 /DEF=60S ribosomal protein L10 --- --- --- --- --- --- SPAP7G5.05 // |rpl1002|rpl10-2|60S ribosomal protein L10|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.31160500112631 1.2483630471837 1.35656984284142 3.37737252755958 -1.17215135585838 Max fold change at or above threshold 4 3.37737252755958 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778513_at SPBC1105.13c.S1 --- 3.3768840698073 --- --- --- --- 3.23748159408569 10.9326000213623 7.02806377410889 6.70593118667603 0.2392578125 0.0952147990465164 0.219482004642487 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1105.13c /DEF=hypothetical protein --- --- --- --- --- --- SPBC1105.13c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.45265763028779 3.3768840698073 -1.14524460142837 2.17084285110622 2.07134187231414 Max fold change at or above threshold 4 3.3768840698073 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778982_at YJR086W.S1 G protein gamma subunit, forms a dimer with Ste4p to activate the mating signaling pathway, forms a heterotrimer with Gpa1p and Ste4p to dampen signaling; C-terminus is palmitoylated and farnesylated, which are required for normal signaling 3.37438245475599 44.4228096008301 96.6620063781738 STE18 750 // signal transduction during conjugation with cellular fusion // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5834 // heterotrimeric G-protein complex // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 3924 // GTPase activity // traceable author statement 109.687484741211 56.3396759033203 32.5059432983398 83.6365280151367 0.000732421991415322 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR086W /GEN=STE18 /DB_XREF=GI:6322545 /SEG=NC_001142:+585982,586314 /DEF=gamma subunit of G protein coupled to mating factor receptors /NOTE=Ste18p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 8995254]; go_component: heterotrimeric G-protein complex [goid GO:0005834] [evidence IDA] [pmid 8995254]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 8995254]; go_function: GTPase activity [goid GO:0003924] [evidence TAS]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence IMP] [pmid 3151178] --- --- --- --- --- --- S0003846 // STE18 SGDID:S0003846, Chr X from 585982-586314, Verified ORF // sgd // 11 // --- /// YJR086W // cdna:known chromosome:SGD1:X:585982:586314:1 gene:YJR086W // ensembl // 11 // --- --- No cerevisiae_gene 1.25412928103428 -1.94689591273894 -1.57691863473129 -3.37438245475599 -1.31147821824167 Max fold change at or above threshold 4 3.37438245475599 Max fold change at or above threshold 1.17102838499355 -0.424875969023391 -1.13786415851672 0.391711742546561 70.542407989502 33.4279486760046 0.47387025235911 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771307_at SPAC977.12.S1 --- 3.3742314307744 --- --- --- --- 0.666284620761871 1.41667151451111 2.24819850921631 0.717627286911011 0.976073980331421 0.725830018520355 0.665526986122131 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC977.12 /DEF=L-asparaginase (putative) --- --- --- --- --- --- SPAC977.12 // |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.48183868157888 2.12622574552478 1.55432534581645 3.3742314307744 1.07705815885474 Max fold change at or above threshold 0 3.3742314307744 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777936_at SPAC27D7.12.S1 --- 3.37356605682173 --- --- --- --- 2.01543593406677 6.79920625686646 0.896916031837463 0.645592153072357 0.533936023712158 0.111571997404099 0.828612983226776 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27D7.12 /GEN=but1 /DEF=neddylation pathway (PMID 14623327) --- --- --- --- --- --- SPAC27D7.12c // |but1|SPAC27D7.12|neddylation pathway protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.73809594760487 3.37356605682173 -2.87484796127397 -2.24707315124902 -3.12184081617994 Max fold change at or above threshold 1 3.37356605682173 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771084_at YIL150C.S1 Essential, chromatin-associated protein involved in the initiation of DNA replication; required for the association of the MCM2-7 complex with replication origins 3.37286340573744 154.138618469238 51.1194553375244 MCM10 6270 // DNA replication initiation // inferred from physical interaction /// 6270 // DNA replication initiation // inferred from mutant phenotype /// 6271 // DNA strand elongation // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 3682 // chromatin binding // inferred from direct assay 46.0798759460449 152.856109619141 155.421127319336 56.1590347290039 0.00195312988944352 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL150C /GEN=MCM10 /DB_XREF=GI:6322041 /SEG=NC_001141:-61013,62728 /DEF=Protein required for S-phase (DNA synthesis) initiation or completion /NOTE=Mcm10p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9154825]; go_function: chromatin binding [goid GO:0003682] [evidence IDA] [pmid 10783164]; go_process: DNA replication initiation [goid GO:0006270] [evidence IMP,IPI] [pmid 9154825]; go_process: DNA strand elongation [goid GO:0006271] [evidence IMP] [pmid 9154825] --- --- --- --- --- --- S0001412 // MCM10 SGDID:S0001412, Chr IX from 62728-61013, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000016362 // cdna:Genscan chromosome:SGD1:IX:61013:62728:-1 // ensembl // 10 // --- /// YIL150C // cdna:known chromosome:SGD1:IX:61013:62728:-1 gene:YIL150C // ensembl // 10 // --- --- No cerevisiae_gene 1.98585809768118 3.31719880926156 1.78253981538902 3.37286340573744 1.2187323332806 Max fold change at or above threshold 4 3.37286340573744 Max fold change at or above threshold -0.948342003956691 0.842319178317746 0.885335095526895 -0.77931226988795 102.629036903381 59.6295015104265 0.581019790398734 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772540_at YER028C.S1 Probable transcriptional repressor involved in response to toxic agents such as hydroxyurea that inhibit ribonucleotide reductase; phosphorylation by Snf1p or the Mec1p pathway inactivates Mig3p, allowing induction of damage response genes 3.37270031477594 85.1831207275391 69.40500831604 MIG3 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 6352 // transcription initiation // traceable author statement /// 6974 // response to DNA damage stimulus // inferred from genetic interaction 5634 // nucleus // inferred from direct assay 3677 // DNA binding // inferred from direct assay /// 3700 // transcription factor activity // traceable author statement /// 16566 // specific transcriptional repressor activity // inferred from physical interaction /// 16566 // specific transcriptional repressor activity // inferred from sequence similarity /// 16566 // specific transcriptional repressor activity // inferred from genetic interaction 57.6017265319824 68.8752136230469 101.491027832031 81.2082901000977 0.00292969006113708 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER028C /GEN=MIG3 /DB_XREF=GI:6320866 /SEG=NC_001137:-210691,211875 /DEF=Probable transcriptional repressor involved in response to toxic agents such as hydroxyurea that inhibit ribonucleotide reductase; phosphorylation by Snf1p or the Mec1p pathway inactivates Mig3p, allowing induction of damage response genes /NOTE=Mig3p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12239282]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 12239282]; go_function: specific transcriptional repressor activity [goid GO:0016566] [evidence IGI,ISS] [pmid 14993292]; go_function: specific transcriptional repressor activity [goid GO:0016566] [evidence IPI] [pmid 9832517]; go_function: transcription factor activity [goid GO:0003700] [evidence TAS] [pmid 12239282]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IGI] [pmid 14993292]; go_process: response to DNA damage stimulus [goid GO:0006974] [evidence IGI] [pmid 14993292]; go_process: transcription initiation [goid GO:0006352] [evidence TAS] [pmid 12239282] --- --- --- --- --- --- S0000830 // MIG3 SGDID:S0000830, Chr V from 211875-210691, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016829 // cdna:Genscan chromosome:SGD1:V:210691:211875:-1 // ensembl // 11 // --- /// YER028C // cdna:known chromosome:SGD1:V:210691:211875:-1 gene:YER028C // ensembl // 11 // --- GENEFINDER00000019621 // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene 3.37270031477594 1.19571439555384 1.27131625031532 1.76194419755248 1.40982388878583 Max fold change at or above threshold 4 3.37270031477594 Max fold change at or above threshold -1.04788022753306 -0.447988826918758 1.28758298949923 0.208286064952585 77.2940645217896 18.7925465834652 0.243130526253636 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773707_at YPL239W.S1 Cytoplasmic ankyrin-repeat containing protein of unknown function, proposed to link the processes of 40S ribosomal subunit biogenesis and adaptation to osmotic and oxidative stress; expression repressed by heat shock 3.37124700284805 3272.80895996094 1015.36837768555 YAR1 6970 // response to osmotic stress // inferred from mutant phenotype /// 6979 // response to oxidative stress // inferred from mutant phenotype /// 42274 // ribosomal small subunit biogenesis // inferred from genetic interaction /// 42274 // ribosomal small subunit biogenesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 979.094177246094 3244.849609375 3300.76831054688 1051.642578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL239W /GEN=YAR1 /DB_XREF=GI:6325017 /SEG=NC_001148:+99484,100086 /DEF=YAR1 encodes a 200-amino-acid protein with two ANK repeat motifs and an acidic C terminus rich in PEST-like sequences /NOTE=Yar1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006160 // YAR1 SGDID:S0006160, Chr XVI from 99484-100086, Verified ORF // sgd // 11 // --- /// GENSCAN00000017002 // cdna:Genscan chromosome:SGD1:XVI:99484:100086:1 // ensembl // 11 // --- /// YPL239W // cdna:known chromosome:SGD1:XVI:99484:100086:1 gene:YPL239W // ensembl // 11 // --- GENEFINDER00000020779 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 1.93575480166137 3.31413431392455 1.11837755109738 3.37124700284805 1.07409746944156 Max fold change at or above threshold 4 3.37124700284805 Max fold change at or above threshold -0.893489571384359 0.844225812294412 0.887112518372129 -0.837848759282183 2144.08866882324 1303.87027323903 0.608123298349711 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776446_at SPAC23C4.08.S1 --- 3.37096666902941 --- --- --- --- 2.18633413314819 7.37005949020386 3.99276232719421 3.75371408462524 0.466064006090164 0.366210997104645 0.334473013877869 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C4.08 /GEN=rho3 /DEF=GTPase --- --- --- --- --- --- SPAC23C4.08 // |rho3||GTPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.29692229679994 3.37096666902941 1.10724579205357 1.82623610300813 1.71689863306489 Max fold change at or above threshold 3 3.37096666902941 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769579_at YGL121C.S1 Proposed gamma subunit of the heterotrimeric G protein that interacts with the receptor Grp1p; involved in regulation of pseudohyphal growth; requires Gpb1p or Gpb2p to interact with Gpa2p 3.36762164056742 2629.10046386719 832.472564697266 GPG1 7165 // signal transduction // inferred from physical interaction --- 4871 // signal transducer activity // inferred from physical interaction 791.983154296875 2667.099609375 2591.10131835938 872.961975097656 0.000244140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL121C /GEN=GPG1 /DB_XREF=GI:6321317 /SEG=NC_001139:-280781,281161 /DEF=Proposed gamma subunit of the heterotrimeric G protein that interacts with the receptor Grp1p; involved in regulation of pseudohyphal growth; requires Gpb1p or Gpb2p to interact with Gpa2p /NOTE=Gpg1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: signal transducer activity [goid GO:0004871] [evidence IPI] [pmid 12150916]; go_process: signal transduction [goid GO:0007165] [evidence IPI] [pmid 12150916] --- --- --- --- --- --- S0003089 // GPG1 SGDID:S0003089, Chr VII from 281163-280783, reverse complement, Verified ORF // sgd // 11 // --- /// YGL121C // cdna:known chromosome:SGD1:VII:280783:281163:-1 gene:YGL121C // ensembl // 11 // --- --- No cerevisiae_gene -2.17792047511971 3.36762164056742 1.994238682747 3.27166216137484 1.10224816066028 Max fold change at or above threshold 4 3.36762164056742 Max fold change at or above threshold -0.904196189056234 0.901797722964629 0.828600962023992 -0.826202495932387 1730.78651428223 1038.27396238557 0.599885632235906 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770506_at YIL162W.S1 Invertase, sucrose hydrolyzing enzyme; a secreted, glycosylated form is regulated by glucose repression, and an intracellular, nonglycosylated enzyme is produced constitutively 3.36686471244416 9421.35693359375 3884.66943359375 SUC2 5987 // sucrose catabolism // traceable author statement 5576 // extracellular region // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4564 // beta-fructofuranosidase activity // inferred from mutant phenotype 3518.83935546875 11847.4560546875 6995.2578125 4250.49951171875 0.00292969006113708 0.00415039015933871 0.00195312988944352 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL162W /GEN=SUC2 /DB_XREF=GI:6322029 /SEG=NC_001141:+37385,38983 /DEF=Suc2p /NOTE=go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 6341817]; go_component: extracellular [goid GO:0005576] [evidence IDA] [pmid 6341817]; go_function: beta-fructofuranosidase activity [goid GO:0004564] [evidence IMP] [pmid 2834091]; go_process: sucrose catabolism [goid GO:0005987] [evidence TAS] --- --- --- --- --- --- S0001424 // SUC2 SGDID:S0001424, Chr IX from 37385-38983, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019102 // cdna:GeneFinder chromosome:SGD1:IX:37055:38983:1 // ensembl // 11 // --- /// GENSCAN00000016352 // cdna:Genscan chromosome:SGD1:IX:37502:38983:1 // ensembl // 11 // --- /// YIL162W // cdna:known chromosome:SGD1:IX:37385:38983:1 gene:YIL162W // ensembl // 11 // --- --- No cerevisiae_gene 1.27230186622426 3.36686471244416 1.63075760037732 1.98794463339977 1.2079265582593 Max fold change at or above threshold 4 3.36686471244416 Max fold change at or above threshold -0.83080253710163 1.37693585384698 0.0907217409108484 -0.636855057656201 6653.01318359375 3772.46540322205 0.567031102918134 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777223_at YGR127W.S1 Hypothetical protein 3.36360107402728 2076.47186279297 682.228790283203 --- --- --- --- 651.411560058594 1961.85510253906 2191.08862304688 713.046020507813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR127W /GEN=ASN2 /DB_XREF=GI:6321566 /SEG=NC_001139:+746801,747739 /DEF=Hypothetical ORF /NOTE=Ygr127wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003359 // YGR127W SGDID:S0003359, Chr VII from 746803-747741, Uncharacterized ORF // sgd // 11 // --- /// YGR127W // cdna:known chromosome:SGD1:VII:746803:747741:1 gene:YGR127W // ensembl // 11 // --- GENEFINDER00000021754 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 1.58091423119883 3.01169832227508 -1.42305388936123 3.36360107402728 1.09461677413842 Max fold change at or above threshold 4 3.36360107402728 Max fold change at or above threshold -0.897826508552284 0.718450855119723 1.00118333323191 -0.821807679799351 1379.35032653809 810.778874922361 0.587797645981109 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776461_at SPAC4D7.10c.S1 --- 3.36241347469923 --- --- --- --- 11.966215133667 40.2353630065918 25.1459083557129 8.31601238250732 0.030273400247097 0.0107421996071935 0.0561522990465164 0.018554700538516 P P M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4D7.10c /DEF=sequence orphan --- --- --- --- --- --- SPAC4D7.10c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.252931973931 3.36241347469923 -1.40875923062517 2.10140868059147 -1.43893666618845 Max fold change at or above threshold 4 3.36241347469923 Max fold change at or above threshold PAPAMP No 4 0 PPMP 0 3 1 No No 2 < x = 3
1777546_at SPAC630.05.S1 --- 3.3612608218625 --- --- --- --- 1.76907753944397 5.94633102416992 3.22270202636719 2.63670992851257 0.303710997104645 0.303710997104645 0.398925989866257 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC630.05 /GEN=gyp7 /DEF=TBC domain protein --- --- --- --- --- --- SPAC630.05 // |gyp7||GTPase activating protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.24252157903539 3.3612608218625 -2.47930972062591 1.82168500504512 1.49044339195065 Max fold change at or above threshold 3 3.3612608218625 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775882_at SPBC2A9.05c.S1 --- 3.36109526109316 --- --- --- --- 2.87263560295105 1.60944557189941 9.65520191192627 3.83188533782959 0.533936023712158 0.665526986122131 0.466064006090164 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2A9.05c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC2A9.05c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.56149278092662 -1.78486036005608 1.44612944774904 3.36109526109316 1.3339267026744 Max fold change at or above threshold 3 3.36109526109316 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774092_at YML043C.S1 rDNA transcription factor CF component, which also contains Rrn6p and Rrn7p, which is required for rDNA transcription by RNA polymerase I; component of rDNA transcription factor 3.36108008513704 56.7873344421387 140.286827087402 RRN11 6360 // transcription from RNA polymerase I promoter // traceable author statement 120 // RNA polymerase I transcription factor complex // traceable author statement 3701 // RNA polymerase I transcription factor activity // traceable author statement 126.476348876953 57.6251754760742 55.9494934082031 154.097305297852 0.000244141003349796 0.0107421996071935 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML043C /GEN=RRN11 /DB_XREF=GI:6323598 /SEG=NC_001145:-190244,191767 /DEF=rDNA transcription factor CF component, which also contains Rrn6p and Rrn7p, which is required for rDNA transcription by RNA polymerase I /NOTE=Rrn11p; go_component: RNA polymerase I transcription factor complex [goid GO:0000120] [evidence TAS] [pmid 9932458]; go_function: RNA polymerase I transcription factor activity [goid GO:0003701] [evidence TAS] [pmid 9932458]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS] [pmid 9932458] --- --- --- --- --- --- S0004507 // RRN11 SGDID:S0004507, Chr XIII from 191767-190244, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018681 // cdna:Genscan chromosome:SGD1:XIII:190244:191767:-1 // ensembl // 11 // --- /// GENEFINDER00000021818 // cdna:GeneFinder chromosome:SGD1:XIII:190244:191767:-1 // ensembl // 11 // --- /// YML043C // cdna:known chromosome:SGD1:XIII:190244:191767:-1 gene:YML043C // ensembl // 11 // --- --- No cerevisiae_gene 3.36108008513704 -2.19481065058909 -1.13689927135611 -2.2605450232443 1.21838831264627 Max fold change at or above threshold 4 3.36108008513704 Max fold change at or above threshold 0.564265492680668 -0.82626274609409 -0.860105063072721 1.12210231648614 98.5370807647705 49.5144014202445 0.502495111849783 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1779461_at YOL111C.S1 Hypothetical protein 3.35823603046573 2050.30401611328 670.897918701172 --- --- 5737 // cytoplasm // inferred from direct assay --- 643.950012207031 2162.5361328125 1938.07189941406 697.845825195313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL111C /GEN=MSB4 /DB_XREF=GI:6324461 /SEG=NC_001147:-108257,108895 /DEF=Hypothetical ORF /NOTE=Yol111cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005471 // YOL111C SGDID:S0005471, Chr XV from 108895-108257, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017377 // cdna:Genscan chromosome:SGD1:XV:108257:108895:-1 // ensembl // 11 // --- /// GENEFINDER00000022671 // cdna:GeneFinder chromosome:SGD1:XV:108257:108895:-1 // ensembl // 11 // --- /// YOL111C // cdna:known chromosome:SGD1:XV:108257:108895:-1 gene:YOL111C // ensembl // 11 // --- --- No cerevisiae_gene 1.56634605241071 3.35823603046573 1.10162573692166 3.00966202760311 1.08369564712572 Max fold change at or above threshold 4 3.35823603046573 Max fold change at or above threshold -0.893627525945027 0.999972626324401 0.720077070336537 -0.826422170715912 1360.60096740723 801.957117919263 0.5894138966015 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779844_at YAR023C.S1 Putative integral membrane protein, member of DUP240 gene family 3.35756072525968 329.954879760742 113.705574035645 --- --- --- --- 115.655975341797 271.587799072266 388.321960449219 111.755172729492 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR023C /GEN=PAU7 /DB_XREF=GI:6319330 /SEG=NC_001133:-179281,179820 /DEF=Putative integral membrane protein, member of DUP240 gene family /NOTE=Yar023cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000074 // span:2-24 // numtm:1 S0000074 // YAR023C SGDID:S0000074, Chr I from 179818-179279, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YAR023C // cdna:known chromosome:SGD1:I:179279:179818:-1 gene:YAR023C // ensembl // 11 // --- GENSCAN00000020390 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 1.21624485627926 2.34823837047455 2.46793524222159 3.35756072525968 -1.03490489538007 Max fold change at or above threshold 4 3.35756072525968 Max fold change at or above threshold -0.794436186714317 0.372305105227284 1.24575455897117 -0.823623477484137 221.830226898193 133.647300226239 0.602475605308625 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776092_at YJR031C.S1 Guanine nucleotide exchange factor for ADP ribosylation factors (ARFs), involved in vesicular transport between the Golgi and ER, Golgi organization, and actin cytoskeleton organization; similar to but not functionally redundant with Gea2p 3.35661321961841 79.512565612793 247.01530456543 GEA1 6888 // ER to Golgi transport // inferred from mutant phenotype /// 6890 // retrograde transport, Golgi to ER // inferred from genetic interaction /// 6891 // intra-Golgi transport // inferred from physical interaction /// 30036 // actin cytoskeleton organization and biogenesis // inferred from genetic interaction 137 // Golgi cis cisterna // inferred from direct assay /// 5798 // Golgi vesicle // inferred from physical interaction 5086 // ARF guanyl-nucleotide exchange factor activity // traceable author statement 227.899291992188 67.8956069946289 91.129524230957 266.131317138672 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR031C /GEN=GEA1 /DB_XREF=GI:6322491 /SEG=NC_001142:-486500,490726 /DEF=component of a complex guanine nucleotide exchange activity for the ADP-ribosylation factor ARF /NOTE=Gea1p; go_component: Golgi vesicle [goid GO:0005798] [evidence IPI] [pmid 8945477]; go_function: ARF guanyl-nucleotide exchange factor activity [goid GO:0005086] [evidence TAS] [pmid 8945477]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 8945477]; go_process: intra-Golgi transport [goid GO:0006891] [evidence IPI] [pmid 8945477] --- --- --- --- --- --- S0003792 // GEA1 SGDID:S0003792, Chr X from 490726-486500, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024157 // cdna:Genscan chromosome:SGD1:X:486500:490726:-1 // ensembl // 11 // --- /// GENEFINDER00000024331 // cdna:GeneFinder chromosome:SGD1:X:486500:490726:-1 // ensembl // 11 // --- /// YJR031C // cdna:known chromosome:SGD1:X:486500:490726:-1 gene:YJR031C // ensembl // 11 // --- --- No cerevisiae_gene -1.26091046270786 -3.35661321961841 -1.00740980963394 -2.50082828715975 1.16775842001209 Max fold change at or above threshold 4 3.35661321961841 Max fold change at or above threshold 0.65674764635826 -0.969019558553606 -0.732944116384663 1.04521602858001 163.263935089111 98.4173407571182 0.602811274292763 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779488_at SPAC25B8.01.S1 --- 3.35584818928108 --- --- --- --- 2.88017058372498 1.5705794095993 0.95457512140274 1.68037927150726 0.665526986122131 0.696289002895355 0.919434010982513 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25B8.01 /DEF=MAPR family steroid-binding protein --- --- --- --- --- --- SPAC25B8.01 // ||SPAC26H5.15|MAPR family steroid-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.35584818928108 -1.83382678145499 -2.10780481008566 -3.01722778977582 -1.71400030490826 Max fold change at or above threshold 1 3.35584818928108 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776496_at YML111W.S1 Component of the Rsp5p E3-ubiquitin ligase complex, involved in intracellular amino acid permease sorting, functions in heat shock element mediated gene expression, essential for growth in stress conditions, functional homolog of BUL1 3.35577050838287 36.4541168212891 113.714458465576 BUL2 209 // protein polyubiquitination // inferred from mutant phenotype /// 209 // protein polyubiquitination // inferred from sequence similarity /// 6513 // protein monoubiquitination // inferred from mutant phenotype /// 6513 // protein monoubiquitination // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay --- 107.133239746094 40.983154296875 31.9250793457031 120.295677185059 0.000244141003349796 0.0239257998764515 0.030273400247097 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML111W /GEN=BUL2 /DB_XREF=GI:6323525 /SEG=NC_001145:+46942,49704 /DEF=a homologue of BUL1 /NOTE=Bul2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein monoubiquitination [goid GO:0006513] [evidence IMP,ISS] [pmid 9931424]; go_process: protein polyubiquitination [goid GO:0000209] [evidence IMP,ISS] [pmid 9931424] --- --- --- --- --- --- S0004579 // BUL2 SGDID:S0004579, Chr XIII from 46942-49704, Verified ORF // sgd // 11 // --- /// GENSCAN00000018624 // cdna:Genscan chromosome:SGD1:XIII:46942:49704:1 // ensembl // 11 // --- /// YML111W // cdna:known chromosome:SGD1:XIII:46942:49704:1 gene:YML111W // ensembl // 11 // --- --- No cerevisiae_gene -1.63769093239503 -2.6140798965848 -1.18451397675185 -3.35577050838287 1.12286044434164 Max fold change at or above threshold 4 3.35577050838287 Max fold change at or above threshold 0.710923948097455 -0.756446334834128 -0.957376536415198 1.00289892315187 75.0842876434326 45.0807040449674 0.600401301788344 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1779102_at SPAC19G12.05.S1 --- 3.35551999863218 --- --- --- --- 0.669334411621094 1.64271020889282 2.24596500396729 0.586365699768066 0.919434010982513 0.753906011581421 0.633789002895355 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19G12.05 /DEF=tricarboxylate carrier activity (predicted) --- --- --- --- --- --- SPAC19G12.05 // |||mitochondrial citrate transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.58477387554 2.45424436630154 2.19407816934721 3.35551999863218 -1.14149653004234 Max fold change at or above threshold 0 3.35551999863218 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769334_at SPBC11C11.06c.S1 --- 3.35536319985904 --- --- --- --- 2.05668926239014 2.80807828903198 3.03556966781616 6.90093946456909 0.533936023712158 0.533936023712158 0.601073980331421 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11C11.06c /DEF=hypothetical protein --- --- --- --- --- --- SPBC11C11.06c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -2.04320116627398 1.36533911095964 2.60922032184995 1.47594958719648 3.35536319985904 Max fold change at or above threshold 3 3.35536319985904 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780029_at YAR019C.S1 Protein kinase of the Mitotic Exit Network that is localized to the spindle pole bodies at late anaphase; promotes mitotic exit by directly switching on the kinase activity of Dbf2p 3.3549181371754 472.412124633789 949.762817382813 CDC15 910 // cytokinesis // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from direct assay /// 7096 // regulation of exit from mitosis // inferred from mutant phenotype 5816 // spindle pole body // inferred from direct assay /// 5935 // bud neck // traceable author statement 4672 // protein kinase activity // inferred from direct assay 905.227722167969 434.413848876953 510.410400390625 994.297912597656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR019C /GEN=CDC15 /DB_XREF=GI:6319328 /SEG=NC_001133:-172211,175135 /DEF=Protein kinase of the Mitotic Exit Network that is localized to the spindle pole bodies at late anaphase; promotes mitotic exit by directly switching on the kinase activity of Dbf2p /NOTE=Cdc15p; go_component: bud neck [goid GO:0005935] [evidence TAS] [pmid 12832486]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 10662594]; go_function: protein kinase activity [goid GO:0004672] [evidence IDA] [pmid 11404483]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 11267871]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 11404483]; go_process: regulation of exit from mitosis [goid GO:0007096] [evidence IMP] [pmid 11267871] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 3.0E-62 /// hanks // 2.1.17 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH // 5.0E-73 --- --- S0000072 // CDC15 SGDID:S0000072, Chr I from 175133-172209, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018221 // cdna:GeneFinder chromosome:SGD1:I:172209:175124:-1 // ensembl // 11 // --- /// GENSCAN00000020389 // cdna:Genscan chromosome:SGD1:I:172209:175133:-1 // ensembl // 11 // --- /// YAR019C // cdna:known chromosome:SGD1:I:172209:175133:-1 gene:YAR019C // ensembl // 11 // --- --- No cerevisiae_gene -3.3549181371754 -2.08379112339113 1.31632847424671 -1.77352914728067 1.09839534102686 Max fold change at or above threshold 4 3.3549181371754 Max fold change at or above threshold 0.694069336719813 -0.989133764139614 -0.717439070293224 1.01250349771303 711.087471008301 279.713050107039 0.393359553516551 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776242_at SPBC15D4.07c.S1 --- 3.3548908124776 --- --- --- --- 2.82585597038269 9.48043823242188 3.54199647903442 2.67247629165649 0.466064006090164 0.0561522990465164 0.0805663987994194 0.171387001872063 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC15D4.07c /GEN=apg9 /DEF=involved in autophagy (predicted) --- --- --- --- --- --- SPBC15D4.07c // |apg9||autophagy protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.08852488495294 3.3548908124776 -2.17985492032057 1.25342427786748 -1.0573923440238 Max fold change at or above threshold 4 3.3548908124776 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1778015_at SPAC25A8.01c.S1 --- 3.35361278549831 --- --- --- --- 0.445674449205399 0.338594168424606 0.471119970083237 1.49060761928558 0.828612983226776 0.943848013877869 0.805419981479645 0.457763671875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25A8.01c /DEF=SNF2 family --- --- --- --- --- --- SPAC25A8.01c // |snf2|snf2SR|SNF2 family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.56896389967523 -1.31624963087524 -3.35361278549831 1.05709441257673 3.34461089690741 Max fold change at or above threshold 0 3.35361278549831 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770331_at SPAC7D4.12c.S1 --- 3.35353543790176 --- --- --- --- 3.88216733932495 10.4611883163452 6.51484489440918 3.36844968795776 0.567627012729645 0.274170011281967 0.334473013877869 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC7D4.12c /DEF=hypothetical protein --- --- --- --- --- --- SPAC7D4.12c // |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.50972294439083 2.69467732891809 3.35353543790176 1.67814633553174 -1.15250863125661 Max fold change at or above threshold 4 3.35353543790176 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774563_at SPCC16C4.04.S1 --- 3.35294416682989 --- --- --- --- 6.58096504211426 11.0878410339355 9.59753131866455 10.8085107803345 0.213134765625 0.0375977009534836 0.0375977009534836 0.00585938012227416 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16C4.04 /DEF=sequence orphan --- --- --- --- --- --- SPCC16C4.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.35294416682989 1.684835121138 1.17034842555229 1.45837749589096 1.64238993995051 Max fold change at or above threshold 4 3.35294416682989 Max fold change at or above threshold AAPPPP No 4 0 APPP 1 3 0 No No 2 < x = 3
1777828_at YOR280C.S1 Serine hydrolase that localizes to both the nucleus and cytoplasm; sequence is similar to Fsh1p and Fsh3p 3.3525807669144 192.071266174316 536.849594116211 FSH3 46655 // folic acid metabolism // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 17171 // serine hydrolase activity // inferred from direct assay 511.516265869141 152.573883056641 231.568649291992 562.182922363281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR280C /GEN=FSH3 /DB_XREF=GI:6324854 /SEG=NC_001147:-844989,845789 /DEF=Serine hydrolase that localizes to both the nucleus and cytoplasm. Sequence similary to Fsh1p and Fsh3p /NOTE=Fsh3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: serine hydrolase activity [goid GO:0017171] [evidence IDA] [pmid 14645503]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005806 // FSH3 SGDID:S0005806, Chr XV from 845789-844989, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017721 // cdna:Genscan chromosome:SGD1:XV:844989:845789:-1 // ensembl // 11 // --- /// YOR280C // cdna:known chromosome:SGD1:XV:844989:845789:-1 gene:YOR280C // ensembl // 11 // --- --- No cerevisiae_gene -1.23963251291283 -3.3525807669144 -1.22060687039383 -2.20891846730148 1.09905189702629 Max fold change at or above threshold 4 3.3525807669144 Max fold change at or above threshold 0.725444324146374 -1.04526210872064 -0.655571318684204 0.975389103258465 364.460430145264 202.711401590903 0.556195912708845 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779073_at YJL069C.S1 Possible U3 snoRNP protein involved in maturation of pre-18S rRNA, based on computational analysis of large-scale protein-protein interaction data 3.35151137436479 119.287185668945 401.145843505859 UTP18 6365 // 35S primary transcript processing // inferred from mutant phenotype /// 6365 // 35S primary transcript processing // inferred from physical interaction /// 6365 // 35S primary transcript processing // RCA 5730 // nucleolus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction --- 379.798126220703 113.321449279785 125.252922058105 422.493560791016 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL069C /GEN=UTP18 /DB_XREF=GI:6322392 /SEG=NC_001142:-310838,312622 /DEF=Possible U3 snoRNP protein involved in maturation of pre-18S rRNA, based on computational analysis of large-scale protein-protein interaction data /NOTE=Utp18p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_function: snoRNA binding [goid GO:0030515] [evidence TAS] [pmid 14566057]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0003605 // UTP18 SGDID:S0003605, Chr X from 312622-310838, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024086 // cdna:Genscan chromosome:SGD1:X:310838:312622:-1 // ensembl // 11 // --- /// GENEFINDER00000024399 // cdna:GeneFinder chromosome:SGD1:X:310838:312622:-1 // ensembl // 11 // --- /// YJL069C // cdna:known chromosome:SGD1:X:310838:312622:-1 gene:YJL069C // ensembl // 11 // --- --- No cerevisiae_gene 1.20975562916701 -3.35151137436479 -1.4345672232733 -3.03224962723435 1.11241612747058 Max fold change at or above threshold 4 3.35151137436479 Max fold change at or above threshold 0.730338635098519 -0.897154169726853 -0.824283304176427 0.991098838804761 260.216514587402 163.73447314227 0.629223988346345 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774199_at SPCC1442.17c.S1 --- 3.35149858788665 --- --- --- --- 3.32839298248291 1.75588810443878 1.24401473999023 1.07069039344788 0.188720703125 0.5 0.5 0.55908203125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1442.17c /DEF=hypothetical protein --- --- --- --- --- --- SPCC1442.17c // ||SPCC285.02c|conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.35149858788665 -1.89556098368053 -1.09313477952457 -2.67552535793028 -3.1086418658943 Max fold change at or above threshold 1 3.35149858788665 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773550_at SPBC16A3.15c.S1 --- 3.35018704298922 --- --- --- --- 2.1034882068634 0.656133472919464 0.627871870994568 1.88631570339203 0.828612983226776 0.850341975688934 0.919434010982513 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16A3.15c /GEN=nda2 /DEF=tubulin (alpha 1) --- --- --- --- --- --- SPBC16A3.15c // |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.82263672483258 -3.20588461598208 -1.58395515136424 -3.35018704298922 -1.11513051769693 Max fold change at or above threshold 0 3.35018704298922 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772477_at YJR124C.S1 Hypothetical protein 3.34898575258922 52.5444965362549 167.879516601563 --- --- --- --- 155.791854858398 46.519115447998 58.5698776245117 179.967178344727 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR124C /GEN=RPS5 /DB_XREF=GI:6322584 /SEG=NC_001142:-652807,654153 /DEF=Hypothetical ORF /NOTE=Yjr124cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003885 // span:19-41,51-73,93-115,144-166,186-205,261-283,288-307,334-356,384-406,416-437 // numtm:10 S0003885 // YJR124C SGDID:S0003885, Chr X from 654153-652807, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024230 // cdna:Genscan chromosome:SGD1:X:652807:654153:-1 // ensembl // 11 // --- /// GENEFINDER00000024352 // cdna:GeneFinder chromosome:SGD1:X:652807:654153:-1 // ensembl // 11 // --- /// YJR124C // cdna:known chromosome:SGD1:X:652807:654153:-1 gene:YJR124C // ensembl // 11 // --- --- No cerevisiae_gene 2.36541343147265 -3.34898575258922 -1.2259730900049 -2.65993137047633 1.15517706948352 Max fold change at or above threshold 4 3.34898575258922 Max fold change at or above threshold 0.675300231779828 -0.943658782352648 -0.765117545461349 1.03347609603417 110.212006568909 67.4956799131536 0.612416759429498 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775446_at YOR334W.S1 Mitochondrial inner membrane Mg(2+) channel, required for maintenance of intramitochondrial Mg(2+) concentrations at the correct level to support splicing of group II introns 3.34858949874195 65.721866607666 188.831092834473 MRS2 373 // Group II intron splicing // inferred from mutant phenotype /// 45016 // mitochondrial magnesium ion transport // inferred from genetic interaction /// 45016 // mitochondrial magnesium ion transport // inferred from sequence similarity /// 45016 // mitochondrial magnesium ion transport // inferred from mutant phenotype /// 45016 // mitochondrial magnesium ion transport // inferred from direct assay 5743 // mitochondrial inner membrane // inferred from direct assay 15095 // magnesium ion transporter activity // inferred from mutant phenotype /// 15095 // magnesium ion transporter activity // inferred from sequence similarity /// 15095 // magnesium ion transporter activity // inferred from genetic interaction /// 15095 // magnesium ion transporter activity // inferred from direct assay 176.135955810547 52.6000442504883 78.8436889648438 201.526229858398 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR334W /GEN=MRS2 /DB_XREF=GI:6324909 /SEG=NC_001147:+944591,946003 /DEF=Mitochondrial inner membrane Mg(2+) channel, required for maintenance of intramitochondrial Mg(2+) concentrations at the correct level to support splicing of group II introns /NOTE=Mrs2p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 10400670]; go_function: magnesium ion transporter activity [goid GO:0015095] [evidence IGI,IMP,ISS] [pmid 10400670]; go_function: magnesium ion transporter activity [goid GO:0015095] [evidence IDA] [pmid 12628916]; go_process: Group II intron splicing [goid GO:0000373] [evidence IMP] [pmid 1551905]; go_process: mitochondrial magnesium ion transport [goid GO:0045016] [evidence IGI,IMP,ISS] [pmid 10400670]; go_process: mitochondrial magnesium ion transport [goid GO:0045016] [evidence IDA] [pmid 12628916] --- --- --- --- --- --- S0005861 // MRS2 SGDID:S0005861, Chr XV from 944591-946003, Verified ORF // sgd // 10 // --- /// GENSCAN00000017785 // cdna:Genscan chromosome:SGD1:XV:944822:946003:1 // ensembl // 10 // --- /// GENEFINDER00000022865 // cdna:GeneFinder chromosome:SGD1:XV:944927:946003:1 // ensembl // 10 // --- /// YOR334W // cdna:known chromosome:SGD1:XV:944591:946003:1 gene:YOR334W // ensembl // 10 // --- --- No cerevisiae_gene -1.16758592416811 -3.34858949874195 1.14439924437199 -2.23398927831859 1.14415156707221 Max fold change at or above threshold 4 3.34858949874195 Max fold change at or above threshold 0.672776473871609 -1.02826622301867 -0.666901178495288 1.02239092764235 127.276479721069 72.6236394805948 0.57059748698072 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772506_at SPBC32F12.08c.S1 --- 3.34704062586189 --- --- --- --- 1.56276106834412 4.68726062774658 1.41073477268219 0.466908305883408 0.601073980331421 0.303710997104645 0.805419981479645 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32F12.08c /DEF=DASH complex (predicted) --- --- --- --- --- --- SPBC32F12.08c // |duo1||DASH complex Duo1 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.505975030112 2.99934565986671 2.27855743097124 -1.10776391041449 -3.34704062586189 Max fold change at or above threshold 1 3.34704062586189 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771926_at YNL068C.S1 Transcription factor of the forkhead family that regulates the cell cycle and pseudohyphal growth; also involved in chromatin silencing at HML and HMR; potential Cdc28p substrate 3.34690076188236 140.61905670166 434.337005615234 FKH2 74 // regulation of cell cycle // inferred from mutant phenotype /// 74 // regulation of cell cycle // inferred from genetic interaction /// 116 // G2-specific transcription in mitotic cell cycle // inferred from physical interaction /// 116 // G2-specific transcription in mitotic cell cycle // inferred from mutant phenotype /// 7124 // pseudohyphal growth // inferred from genetic interaction 5634 // nucleus // inferred from direct assay 3700 // transcription factor activity // inferred from physical interaction /// 3700 // transcription factor activity // inferred from genetic interaction 424.587066650391 126.859771728516 154.378341674805 444.086944580078 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL068C /GEN=FKH2 /DB_XREF=GI:6324261 /SEG=NC_001146:-495700,498288 /DEF=Transcription factor of the forkhead family that regulates the cell cycle and pseudohyphal growth; also involved in chromatin silencing at HML and HMR; potential Cdc28p substrate /NOTE=Fkh2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10899128]; go_function: transcription factor activity [goid GO:0003700] [evidence IGI,IPI] [pmid 10894548]; go_process: G2-specific transcription in mitotic cell cycle [goid GO:0000116] [evidence IMP,IPI] [pmid 10899128]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IGI] [pmid 10894548]; go_process: regulation of cell cycle [goid GO:0000074] [evidence IGI,IMP] [pmid 10894548] --- --- --- --- scop // a.4.5.Forkhead DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Forkhead DNA-binding domain // 5.99999568663814E-40 --- S0005012 // FKH2 SGDID:S0005012, Chr XIV from 498288-495700, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019978 // cdna:Genscan chromosome:SGD1:XIV:495700:498288:-1 // ensembl // 11 // --- /// GENEFINDER00000020517 // cdna:GeneFinder chromosome:SGD1:XIV:495700:498288:-1 // ensembl // 11 // --- /// YNL068C // cdna:known chromosome:SGD1:XIV:495700:498288:-1 gene:YNL068C // ensembl // 11 // --- --- No cerevisiae_gene -1.19023002975304 -3.34690076188236 -1.5544231424759 -2.75030203099847 1.04592668844938 Max fold change at or above threshold 4 3.34690076188236 Max fold change at or above threshold 0.805878030421947 -0.944056867549043 -0.782312523941235 0.920491361068331 287.478031158447 170.136212076851 0.591823352174964 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778823_at YIL072W.S1 Meiosis-specific DNA binding protein that displays Red1p dependent localization to the unsynapsed axial-lateral elements of the synaptonemal complex; required for homologous chromosome synapsis and chiasma formation 3.34667603801519 21.8655481338501 55.9211845397949 HOP1 7126 // meiosis // inferred from mutant phenotype /// 7130 // synaptonemal complex formation // inferred from curator 794 // condensed nuclear chromosome // inferred from direct assay /// 795 // synaptonemal complex // traceable author statement 3677 // DNA binding // inferred from direct assay 60.6766891479492 18.1304340362549 25.6006622314453 51.1656799316406 0.000244141003349796 0.000732421875 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL072W /GEN=HOP1 /DB_XREF=GI:6322118 /SEG=NC_001141:+226599,228416 /DEF=Meiosis-specific DNA binding protein that displays Red1p dependent localization to the unsynapsed axial-lateral elements of the synaptonemal complex; required for homologous chromosome synapsis and chiasma formation /NOTE=Hop1p; go_component: condensed nuclear chromosome [goid GO:0000794] [evidence IDA] [pmid 2107981]; go_component: synaptonemal complex [goid GO:0000795] [evidence TAS] [pmid 7860625]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 2107981]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 2107981]; go_process: synaptonemal complex formation [goid GO:0007130] [evidence IC] [pmid 7860625] --- --- --- --- --- --- S0001334 // HOP1 SGDID:S0001334, Chr IX from 226599-228416, Verified ORF // sgd // 11 // --- /// GENSCAN00000016423 // cdna:Genscan chromosome:SGD1:IX:226599:228416:1 // ensembl // 11 // --- /// GENEFINDER00000019012 // cdna:GeneFinder chromosome:SGD1:IX:227370:228416:1 // ensembl // 11 // --- /// YIL072W // cdna:known chromosome:SGD1:IX:226599:228416:1 gene:YIL072W // ensembl // 11 // --- --- No cerevisiae_gene -1.63421664703268 -3.34667603801519 1.15537302519862 -2.37012185854396 -1.18588650104945 Max fold change at or above threshold 4 3.34667603801519 Max fold change at or above threshold 1.07452772983017 -1.02419390755898 -0.65570249724984 0.605368674978646 38.8933663368225 20.2724622235384 0.521231874041856 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771358_at YHR178W.S1 Activator of multidrug resistance genes, forms a heterodimer with Pdr1p; contains a Zn(II)2Cys6 zinc finger domain that interacts with a PDRE (pleotropic drug resistance element) in vitro; binds Sin3p in a two-hybrid assay 3.34505940844211 113.637550354004 372.31201171875 STB5 6350 // transcription // inferred from direct assay /// 9410 // response to xenobiotic stimulus // inferred from mutant phenotype 5634 // nucleus // inferred from physical interaction 3700 // transcription factor activity // inferred from genetic interaction /// 3700 // transcription factor activity // inferred from direct assay /// 3700 // transcription factor activity // inferred from sequence similarity /// 3700 // transcription factor activity // inferred from physical interaction /// 3700 // transcription factor activity // inferred from mutant phenotype 350.306671142578 104.723602294922 122.551498413086 394.317352294922 0.000244141003349796 0.00122069998178631 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR178W /GEN=STB5 /DB_XREF=GI:6321972 /SEG=NC_001140:+459297,461528 /DEF=binds Sin3p in two-hybrid assay /NOTE=Stb5p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 11943786]; go_function: transcription factor activity [goid GO:0003700] [evidence IGI,IMP,IPI,ISS] [pmid 11943786]; go_process: response to xenobiotic stimulus [goid GO:0009410] [evidence IMP] [pmid 11943786] --- --- --- --- --- --- S0001221 // STB5 SGDID:S0001221, Chr VIII from 459298-461529, Verified ORF // sgd // 10 // --- /// GENSCAN00000016702 // cdna:Genscan chromosome:SGD1:VIII:459298:461529:1 // ensembl // 10 // --- /// GENEFINDER00000020205 // cdna:GeneFinder chromosome:SGD1:VIII:459298:461529:1 // ensembl // 10 // --- /// YHR178W // cdna:known chromosome:SGD1:VIII:459298:461529:1 gene:YHR178W // ensembl // 10 // --- --- No cerevisiae_gene -2.20264822090018 -3.34505940844211 -1.00086965809637 -2.85844461861898 1.12563472173909 Max fold change at or above threshold 4 3.34505940844211 Max fold change at or above threshold 0.71270152236497 -0.918010718531955 -0.799630536356761 1.00493973252375 242.974781036377 150.598654188418 0.619811873257213 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771680_at SPBC3H7.14.S1 --- 3.34493915954639 --- --- --- --- 14.7405824661255 10.3315000534058 14.0035820007324 4.40683126449585 0.030273400247097 0.0375977009534836 0.0239257998764515 0.194580003619194 P P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3H7.14 /DEF=hypothetical protein --- --- --- --- --- --- SPBC3H7.14 // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.47443227671204 -1.4267611082542 -1.23785626580294 -1.05262942476821 -3.34493915954639 Max fold change at or above threshold 4 3.34493915954639 Max fold change at or above threshold PMPPPA No 4 0 PPPA 1 3 0 No No 2 < x = 3
1780075_at YGR260W.S1 High affinity nicotinic acid plasma membrane permease, responsible for uptake of low levels of nicotinic acid; expression of the gene increases in the absence of extracellular nicotinic acid or para-aminobenzoate (PABA) 3.34381034937309 1159.85858154297 3344.96630859375 TNA1 15890 // nicotinamide mononucleotide transport // inferred from mutant phenotype /// 15890 // nicotinamide mononucleotide transport // inferred from expression pattern 5739 // mitochondrion // inferred from direct assay /// 5887 // integral to plasma membrane // inferred from sequence similarity 15664 // nicotinamide mononucleotide permease activity // inferred from mutant phenotype /// 15664 // nicotinamide mononucleotide permease activity // inferred from expression pattern 3505.24389648438 1048.2783203125 1271.43884277344 3184.68872070313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR260W /GEN=TNA1 /DB_XREF=GI:6321698 /SEG=NC_001139:+1012490,1014094 /DEF=Transporter of Nicotinic Acid /NOTE=Tna1p; go_component: integral to plasma membrane [goid GO:0005887] [evidence ISS] [pmid 9678606]; go_function: nicotinamide mononucleotide permease activity [goid GO:0015664] [evidence IEP,IMP] [pmid 10869563]; go_process: nicotinamide mononucleotide transport [goid GO:0015890] [evidence IEP,IMP] [pmid 10869563] --- --- --- --- --- S0003492 // span:90-104,124-143,155-177,183-205,218-237,252-271,322-344,354-376,383-405,410-432,445-464,474-496 // numtm:12 S0003492 // TNA1 SGDID:S0003492, Chr VII from 1012491-1014095, Verified ORF // sgd // 11 // --- /// GENSCAN00000019541 // cdna:Genscan chromosome:SGD1:VII:1012509:1014095:1 // ensembl // 11 // --- /// GENEFINDER00000021427 // cdna:GeneFinder chromosome:SGD1:VII:1012509:1014095:1 // ensembl // 11 // --- /// YGR260W // cdna:known chromosome:SGD1:VII:1012491:1014095:1 gene:YGR260W // ensembl // 11 // --- --- No cerevisiae_gene -2.10668382829654 -3.34381034937309 -1.04038707745694 -2.75691112978604 -1.10065510443686 Max fold change at or above threshold 4 3.34381034937309 Max fold change at or above threshold 0.985232673317578 -0.946936861638698 -0.771442354476834 0.733146542797954 2252.41244506836 1271.60972767717 0.564554564800666 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774439_at SPCC188.03.S1 --- 3.34316948158087 --- --- --- --- 2.02043581008911 3.31531715393066 3.39704060554504 2.6231894493103 0.725830018520355 0.753906011581421 0.567627012729645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC188.03 /GEN=cnd3 /DEF=condensin subunit (PMID 10485849) --- --- --- --- --- --- SPCC188.03 // |cnd3||condensin subunit |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.05791118156709 1.64089209732649 -3.34316948158087 1.68134052494111 1.29832852704913 Max fold change at or above threshold 3 3.34316948158087 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775835_at YPL267W.S1 Protein of unknown function, potential Cdc28p substrate 3.34314133192957 59.4683170318604 190.051300048828 --- --- --- --- 181.456512451172 64.6593856811523 54.2772483825684 198.646087646484 0.00122069998178631 0.00585938012227416 0.00805663969367743 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL267W /GEN=PLC1 /DB_XREF=GI:6324988 /SEG=NC_001148:+38169,38798 /DEF=Protein of unknown function, potential Cdc28p substrate /NOTE=Ypl267wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006188 // YPL267W SGDID:S0006188, Chr XVI from 38169-38798, Uncharacterized ORF // sgd // 11 // --- /// YPL267W // cdna:known chromosome:SGD1:XVI:38169:38798:1 gene:YPL267W // ensembl // 11 // --- --- No cerevisiae_gene -1.00907844712046 -2.80634451657132 -1.42771144221266 -3.34314133192957 1.09473110092942 Max fold change at or above threshold 4 3.34314133192957 Max fold change at or above threshold 0.74761705178349 -0.792499349161446 -0.929400832721877 0.974283130099833 124.759808540344 75.8365580019528 0.607860487197118 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1777338_at SPAC12G12.11c.S1 --- 3.34302969386783 --- --- --- --- 0.859592318534851 0.96295291185379 0.337018609046936 2.00306415557861 0.753906011581421 0.696289002895355 0.904784977436066 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12G12.11c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC12G12.11c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.34302969386783 1.12024373774665 -3.01954250523416 -2.55057820387342 2.33024901733973 Max fold change at or above threshold 0 3.34302969386783 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775635_at YOL034W.S1 Structural maintenance of chromosomes (SMC) protein, interacts with Smc6p and Nse1p to form a large complex; S. pombe homolog forms a heterodimer with S. pombe Rad18p that is involved in DNA repair 3.33757316405008 254.381805419922 818.118682861328 SMC5 6281 // DNA repair // inferred from direct assay /// 8283 // cell proliferation // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 30915 // Smc5-Smc6 complex // inferred from physical interaction --- 779.859802246094 233.660736083984 275.102874755859 856.377563476563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL034W /GEN=SMC5 /DB_XREF=GI:6324539 /SEG=NC_001147:+259923,263204 /DEF=Structural maintenance of chromosomes (SMC) protein /NOTE=Smc5p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11927594]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA repair [goid GO:0006281] [evidence IDA] [pmid 11927594]; go_process: cell proliferation [goid GO:0008283] [evidence IDA] [pmid 11927594] --- --- --- --- --- --- S0005394 // SMC5 SGDID:S0005394, Chr XV from 259923-263204, Verified ORF // sgd // 10 // --- /// GENSCAN00000017439 // cdna:Genscan chromosome:SGD1:XV:259923:263204:1 // ensembl // 10 // --- /// GENEFINDER00000022558 // cdna:GeneFinder chromosome:SGD1:XV:260118:263204:1 // ensembl // 10 // --- /// YOL034W // cdna:known chromosome:SGD1:XV:259923:263204:1 gene:YOL034W // ensembl // 10 // --- --- No cerevisiae_gene -2.67415208286483 -3.33757316405008 -1.12587170485388 -2.83479335844157 1.09811732956371 Max fold change at or above threshold 4 3.33757316405008 Max fold change at or above threshold 0.74405791013095 -0.924200670708913 -0.79762373616104 0.977766496739003 536.250244140625 327.406717660719 0.61054837967563 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776367_at YNL257C.S1 Protein that activates transcription through interaction with DNA-bound Snf1p, C-terminal region has a putative leucine zipper motif; potential Cdc28p substrate 3.3372848748827 741.603851318359 1100.74108886719 SIP3 6367 // transcription initiation from RNA polymerase II promoter // inferred from genetic interaction 5634 // nucleus // inferred from physical interaction 3712 // transcription cofactor activity // inferred from direct assay 1032.47729492188 798.934631347656 684.273071289063 1169.0048828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL257C /GEN=SIP3 /DB_XREF=GI:6324072 /SEG=NC_001146:-160630,164319 /DEF=Protein that activates transcription through interaction with DNA-bound Snf1p, C-terminal region has a putative leucine zipper motif; potential Cdc28p substrate /NOTE=Sip3p; go_component: nucleus [goid GO:0005634] [evidence IGI] [pmid 8127709]; go_function: transcription cofactor activity [goid GO:0003712] [evidence IDA] [pmid 8127709]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence IGI] [pmid 8127709] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 4.30000019073486 /// scop // a.4.5.Arginine repressor (ArgR), N-terminal DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Arginine repressor (ArgR), N-terminal DNA-binding domain // 1.29999995231628 S0005201 // span:1033-1055,1068-1090 // numtm:2 S0005201 // SIP3 SGDID:S0005201, Chr XIV from 164319-160630, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019835 // cdna:Genscan chromosome:SGD1:XIV:160630:164319:-1 // ensembl // 11 // --- /// GENEFINDER00000020426 // cdna:GeneFinder chromosome:SGD1:XIV:160630:164319:-1 // ensembl // 11 // --- /// YNL257C // cdna:known chromosome:SGD1:XIV:160630:164319:-1 gene:YNL257C // ensembl // 11 // --- --- No cerevisiae_gene -3.3372848748827 -1.29231761199321 -1.00252977730303 -1.50886734878643 1.13223301719284 Max fold change at or above threshold 4 3.3372848748827 Max fold change at or above threshold 0.506501535619016 -0.556253092623921 -1.07802972122309 1.12778127822799 921.172470092773 219.752196196348 0.238557059976202 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769350_at YPL253C.S1 Protein that forms a complex with Kar3p at the spindle pole body, possible regulator of Kar3p function in microtubule-mediated processes; required for sister chromatid cohesion; has similarity to Cik1p 3.3371534474745 145.236343383789 467.06233215332 VIK1 7017 // microtubule-based process // inferred from mutant phenotype /// 7017 // microtubule-based process // inferred from physical interaction /// 7064 // mitotic sister chromatid cohesion // inferred from genetic interaction /// 7064 // mitotic sister chromatid cohesion // inferred from mutant phenotype 5816 // spindle pole body // inferred from direct assay /// 5871 // kinesin complex // inferred from direct assay 3777 // microtubule motor activity // inferred from sequence similarity 435.489715576172 159.975326538086 130.497360229492 498.634948730469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL253C /GEN=VIK1 /DB_XREF=GI:6325002 /SEG=NC_001148:-71063,73006 /DEF=vegetative interaction with Kar3p /NOTE=Vik1p; go_component: kinesin complex [goid GO:0005871] [evidence IDA] [pmid 10087265]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 11729143]; go_function: microtubule motor activity [goid GO:0003777] [evidence ISS] [pmid 10087265]; go_process: microtubule-based process [goid GO:0007017] [evidence IMP,IPI] [pmid 10087265] --- --- --- --- --- --- S0006174 // VIK1 SGDID:S0006174, Chr XVI from 73006-71063, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016992 // cdna:Genscan chromosome:SGD1:XVI:71063:72886:-1 // ensembl // 11 // --- /// GENEFINDER00000020917 // cdna:GeneFinder chromosome:SGD1:XVI:71063:72886:-1 // ensembl // 11 // --- /// YPL253C // cdna:known chromosome:SGD1:XVI:71063:73006:-1 gene:YPL253C // ensembl // 11 // --- --- No cerevisiae_gene 1.18991260554303 -2.72223051516943 -1.17399978083339 -3.3371534474745 1.14499821900674 Max fold change at or above threshold 4 3.3371534474745 Max fold change at or above threshold 0.688084238547329 -0.777638313091446 -0.934459596167813 1.02401367071193 306.149337768555 187.971719975273 0.613987021318913 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777670_at YBR089C-A.S1 High-mobility group non-histone chromatin protein, functionally redundant with Nhp6Ap; homologous to mammalian high mobility group proteins 1 and 2; acts to recruit transcription factor Rcs1p to certain promoters 3.33695509040289 2864.69104003906 986.705413818359 NHP6B 6325 // establishment and/or maintenance of chromatin architecture // inferred from sequence similarity /// 6338 // chromatin remodeling // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence similarity /// 6359 // regulation of transcription from RNA polymerase III promoter // inferred from mutant phenotype /// 6359 // regulation of transcription from RNA polymerase III promoter // inferred from genetic interaction /// 6359 // regulation of transcription from RNA polymerase III promoter // inferred from direct assay /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from physical interaction 790 // nuclear chromatin // inferred from sequence similarity /// 35101 // FACT complex // inferred from genetic interaction /// 35101 // FACT complex // inferred from physical interaction 3682 // chromatin binding // inferred from sequence similarity /// 3682 // chromatin binding // inferred from direct assay 918.195251464844 3063.97631835938 2665.40576171875 1055.21557617188 0.00122069998178631 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR089C-A /GEN=NHP6B /DB_XREF=GI:6319565 /SEG=NC_001134:-426147,426446 /DEF=Homologous to mammalian high mobility group proteins 1 and 2; functions redundantly with the highly homologous gene, NHP6A; high-mobility group non-histone chromatin protein /NOTE=Nhp6bp; go_component: nuclear chromatin [goid GO:0000790] [evidence ISS] [pmid 10228169]; go_function: chromatin binding [goid GO:0003682] [evidence ISS] [pmid 10228169]; go_process: establishment and/or maintenance of chromatin architecture [goid GO:0006325] [evidence ISS] [pmid 10228169]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence ISS] [pmid 9872947]; go_process: regulation of transcription from Pol III promoter [goid GO:0006359] [evidence IGI,IMP] [pmid 11239460]; go_process: regulation of transcription from Pol III promoter [goid GO:0006359] [evidence IDA] [pmid 11287614] --- --- --- --- --- --- S0002157 // NHP6B SGDID:S0002157, Chr II from 426483-426184, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021212 // cdna:Genscan chromosome:SGD1:II:426184:426483:-1 // ensembl // 11 // --- /// GENEFINDER00000022231 // cdna:GeneFinder chromosome:SGD1:II:426184:426483:-1 // ensembl // 11 // --- /// YBR089C-A // cdna:known chromosome:SGD1:II:426184:426483:-1 gene:YBR089C-A // ensembl // 11 // --- --- No cerevisiae_gene 2.08906432727935 3.33695509040289 -1.03625723203515 2.90287469627674 1.14922787336183 Max fold change at or above threshold 4 3.33695509040289 Max fold change at or above threshold -0.917727996729874 1.03685021087824 0.6737948478577 -0.792917062006068 1925.69822692871 1097.82307944607 0.570090922915263 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773349_at YJL115W.S1 Nucleosome assembly factor, involved in chromatin assembly after DNA replication, anti-silencing protein that causes derepression of silent loci when overexpressed 3.33661441782412 145.847267150879 117.398685455322 ASF1 8630 // DNA damage response, signal transduction resulting in induction of apoptosis // inferred from mutant phenotype 5678 // chromatin assembly complex // inferred from direct assay 30528 // transcription regulator activity // inferred from mutant phenotype /// 42393 // histone binding // traceable author statement 106.838226318359 136.397567749023 155.296966552734 127.959144592285 0.000732421991415322 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL115W /GEN=ASF1 /DB_XREF=GI:6322346 /SEG=NC_001142:+196206,197045 /DEF=anti-silencing protein that causes depression of silent loci when overexpressed /NOTE=Asf1p; go_component: chromatin assembly complex [goid GO:0005678] [evidence IDA] [pmid 11731479]; go_function: histone binding [goid GO:0042393] [evidence TAS] [pmid 11856374]; go_process: DNA damage response, signal transduction resulting in induction of apoptosis [goid GO:0008630] [evidence IMP] [pmid 11737265] --- --- --- --- --- --- S0003651 // ASF1 SGDID:S0003651, Chr X from 196206-197045, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024402 // cdna:GeneFinder chromosome:SGD1:X:196206:197045:1 // ensembl // 11 // --- /// YJL115W // cdna:known chromosome:SGD1:X:196206:197045:1 gene:YJL115W // ensembl // 11 // --- --- No cerevisiae_gene 3.33661441782412 1.27667383154211 1.00125440068554 1.45357117863391 1.19769064876638 Max fold change at or above threshold 4 3.33661441782412 Max fold change at or above threshold -1.23361575213732 0.237646585958573 1.17832971104706 -0.182360544868306 131.622976303101 20.0911425959015 0.152641606809101 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772237_at SPBC557.04.S1 --- 3.33654560525448 --- --- --- --- 1.82517278194427 6.08977222442627 1.40864038467407 2.38979911804199 0.753906011581421 0.696289002895355 0.850341975688934 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC557.04 /DEF=Ark1Prk1 family protein kinase --- --- --- --- --- --- SPBC557.04 // |||Ark1/Prk1 family protein kinase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.3378925455504 3.33654560525448 1.94594576236072 -1.29569817946585 1.30935500555528 Max fold change at or above threshold 1 3.33654560525448 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775978_at YNL048W.S1 Alpha-1,2-mannosyltransferase, catalyzes addition of the terminal alpha 1,2-Man to the Man5GlcNAc2-PP-dolichol intermediate during asparagine-linked glycosylation in the ER 3.33647775923373 358.892913818359 1040.51934814453 ALG11 6486 // protein amino acid glycosylation // inferred from genetic interaction 5783 // endoplasmic reticulum // inferred from direct assay /// 16020 // membrane // inferred from sequence similarity 26 // alpha-1,2-mannosyltransferase activity // inferred from genetic interaction 994.867553710938 298.178985595703 419.606842041016 1086.17114257813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL048W /GEN=ALG11 /DB_XREF=GI:6324280 /SEG=NC_001146:+538171,539817 /DEF=Alpha-1,2-mannosyltransferase, catalyzes addition of the terminal alpha 1,2-Man to the Man5GlcNAc2-PP-dolichol intermediate during asparagine-linked glycosylation in the ER /NOTE=Alg11p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11278778]; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 11278778]; go_function: alpha-1,2-mannosyltransferase activity [goid GO:0000026] [evidence IGI] [pmid 11278778]; go_process: protein amino acid glycosylation [goid GO:0006486] [evidence IGI] [pmid 11278778] --- --- --- --- --- S0004993 // span:23-45 // numtm:1 S0004993 // ALG11 SGDID:S0004993, Chr XIV from 538172-539818, Verified ORF // sgd // 11 // --- /// GENSCAN00000019996 // cdna:Genscan chromosome:SGD1:XIV:538853:539818:1 // ensembl // 11 // --- /// GENEFINDER00000020568 // cdna:GeneFinder chromosome:SGD1:XIV:538853:539818:1 // ensembl // 11 // --- /// YNL048W // cdna:known chromosome:SGD1:XIV:538172:539818:1 gene:YNL048W // ensembl // 11 // --- --- No cerevisiae_gene -1.88628420789513 -3.33647775923373 1.07700017975559 -2.37095169581075 1.09177461716046 Max fold change at or above threshold 4 3.33647775923373 Max fold change at or above threshold 0.740876787734562 -1.00786254148887 -0.703069728821257 0.970055482575566 699.706130981445 398.394750133866 0.569374388037813 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773526_at SPBC713.04c.S1 --- 3.33608559026492 --- --- --- --- 1.30259072780609 0.45759505033493 0.708963453769684 0.909465968608856 0.633789002895355 0.995850026607513 0.969726979732513 0.941650390625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC713.04c /DEF=WD repeat protein --- --- --- --- --- --- SPBC713.04c // |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.69043197247752 -2.84660143690951 -3.33608559026492 -1.83731717182315 -1.43225890002082 Max fold change at or above threshold 0 3.33608559026492 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779831_at SPAC22F3.05c.S1 --- 3.33570786042205 --- --- --- --- 0.701045393943787 0.25045907497406 0.227415040135384 0.440948367118835 0.932372987270355 0.953857004642487 0.753906011581421 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F3.05c /GEN=alp41 /DEF=ADP-ribosylation factor --- --- --- --- --- --- SPAC22F3.05c // |alp41||ADP-ribosylation factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.06426526434951 -2.79904169579958 -3.33570786042205 -3.08266943789841 -1.58985823788039 Max fold change at or above threshold 0 3.33570786042205 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775071_at YNR039C.S1 Endoplasmic reticulum protein of unknown function, transcription is induced under conditions of zinc deficiency; mutant phenotype suggests a role in uptake of zinc 3.33564034755428 213.140701293945 721.248260498047 ZRG17 6829 // zinc ion transport // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay --- 683.766723632813 221.293258666992 204.988143920898 758.729797363281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR039C /GEN=ZRG17 /DB_XREF=GI:6324367 /SEG=NC_001146:-697613,699430 /DEF=Endoplasmic reticulum protein of unknown function, transcription is induced under conditions of zinc deficiency; mutant phenotype suggests a role in uptake of zinc /NOTE=Zrg17p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: zinc ion transport [goid GO:0006829] [evidence IMP] [pmid 10978274] --- --- --- --- --- S0005322 // span:230-252,257-279,300-322,365-387,400-417,427-449 // numtm:6 S0005322 // ZRG17 SGDID:S0005322, Chr XIV from 699431-697614, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020068 // cdna:Genscan chromosome:SGD1:XIV:697614:699431:-1 // ensembl // 11 // --- /// YNR039C // cdna:known chromosome:SGD1:XIV:697614:699431:-1 gene:YNR039C // ensembl // 11 // --- --- No cerevisiae_gene -1.09552475953936 -3.08986693834069 -1.17223779985608 -3.33564034755428 1.10963252691239 Max fold change at or above threshold 4 3.33564034755428 Max fold change at or above threshold 0.734085624918123 -0.833498097941719 -0.888765339008679 0.988177812032274 467.194480895996 295.023135429156 0.631478211950095 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775896_at SPAC139.04c.S1 --- 3.33518342842368 --- --- --- --- 1.32321953773499 2.849689245224 4.41317987442017 1.82380306720734 0.850341975688934 0.805419981479645 0.753906011581421 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC139.04c /DEF=fructosyl amino acid oxidase (predicted) --- --- --- --- --- --- SPAC139.04c // |||fructosyl amino acid oxidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.10448100310181 2.15360275748493 1.17250947525083 3.33518342842368 1.37830723866821 Max fold change at or above threshold 2 3.33518342842368 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770921_at SPBC1271.01c.S1 --- 3.33390009112243 --- --- --- --- 0.714229285717011 0.650341093540192 1.66032981872559 1.4274959564209 0.904784977436066 0.780517995357513 0.696289002895355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1271.01c /GEN=pof13 /DEF=F-box protein --- --- --- --- --- --- SPBC1271.01c // |pof13||F-box protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.20631390319793 -1.09823797513554 3.33390009112243 2.32464539319301 1.998652232508 Max fold change at or above threshold 0 3.33390009112243 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774326_at YJL102W.S1 Mitochondrial elongation factor involved in translational elongation 3.33219581662732 2298.89196777344 752.816345214844 MEF2 6414 // translational elongation // inferred from sequence similarity 5739 // mitochondrion // inferred from sequence similarity /// 5739 // mitochondrion // inferred from direct assay 3746 // translation elongation factor activity // inferred from sequence similarity 724.577270507813 2414.43334960938 2183.3505859375 781.055419921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL102W /GEN=MEF2 /DB_XREF=GI:6322359 /SEG=NC_001142:+231218,233677 /DEF=mitochondrial elongation factor G-like protein /NOTE=Mef2p; go_component: mitochondrion [goid GO:0005739] [evidence ISS] [pmid 7483851]; go_function: translation elongation factor activity [goid GO:0003746] [evidence ISS] [pmid 7483851]; go_process: translational elongation [goid GO:0006414] [evidence ISS] [pmid 7483851] --- --- --- --- --- --- S0003638 // MEF2 SGDID:S0003638, Chr X from 231218-233677, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024434 // cdna:GeneFinder chromosome:SGD1:X:231218:233677:1 // ensembl // 11 // --- /// GENSCAN00000024060 // cdna:Genscan chromosome:SGD1:X:231398:233677:1 // ensembl // 11 // --- /// YJL102W // cdna:known chromosome:SGD1:X:231218:233677:1 gene:YJL102W // ensembl // 11 // --- --- No cerevisiae_gene -1.5062510538959 3.33219581662732 1.01440756219489 3.01327501538562 1.07794634432085 Max fold change at or above threshold 4 3.33219581662732 Max fold change at or above threshold -0.892395223247378 0.989625236021815 0.732264568215028 -0.829494580989465 1525.85415649414 897.89463806241 0.588453774720807 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776407_at YGL021W.S1 Putative Ser-Thr protein kinase, belongs to the haspin family of kinases; contains a leucine zipper motif; may function in mitosis 3.33182930053363 158.260391235352 430.417984008789 ALK1 7067 // mitosis // inferred from expression pattern 5634 // nucleus // inferred from sequence similarity 4674 // protein serine/threonine kinase activity // inferred from sequence similarity 396.139739990234 118.895568847656 197.625213623047 464.696228027344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL021W /GEN=ALK1 /DB_XREF=GI:6321417 /SEG=NC_001139:+454788,457070 /DEF=leucine zipper (putative), membrane protein (putative) /NOTE=Alk1p; go_component: nucleus [goid GO:0005634] [evidence ISS] [pmid 12737306]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence ISS] [pmid 12737306]; go_process: mitosis [goid GO:0007067] [evidence IEP] [pmid 12737306] --- --- --- hanks // 2.2.3 // CaMK Group; CaMK II KIN1/SNF1/Nim1; kin1+ // 2.0E-7 --- --- S0002989 // ALK1 SGDID:S0002989, Chr VII from 454790-457072, Verified ORF // sgd // 11 // --- /// GENSCAN00000019324 // cdna:Genscan chromosome:SGD1:VII:454865:457072:1 // ensembl // 11 // --- /// YGL021W // cdna:known chromosome:SGD1:VII:454790:457072:1 gene:YGL021W // ensembl // 11 // --- --- No cerevisiae_gene 1.10425795759815 -3.33182930053363 -1.04094767269448 -2.0044999963711 1.17306137485424 Max fold change at or above threshold 4 3.33182930053363 Max fold change at or above threshold 0.625281383394227 -1.07761329484949 -0.594038500272169 1.04637041172743 294.33918762207 162.807585627383 0.553129153282936 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769988_at YNR067C.S1 Daughter cell-specific secreted protein with similarity to glucanases, degrades cell wall from the daughter side causing daughter to separate from mother 3.3308374644415 79.7051734924316 33.3047132492065 DSE4 7109 // cytokinesis, completion of separation // inferred from sequence similarity /// 7109 // cytokinesis, completion of separation // inferred from expression pattern 5576 // extracellular region // inferred from sequence similarity /// 9277 // cell wall (sensu Fungi) // inferred from direct assay /// 30428 // cell septum // inferred from direct assay 4338 // glucan 1,3-beta-glucosidase activity // inferred from sequence similarity 35.4773254394531 41.2411422729492 118.169204711914 31.13210105896 0.018554700538516 0.00585938012227416 0.000244141003349796 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR067C /GEN=DSE4 /DB_XREF=GI:6324395 /SEG=NC_001146:-755743,759096 /DEF=Daughter cell-specific secreted protein with similarity to glucanases, degrades cell wall from the daughter side causing daughter to separate from mother /NOTE=Dse4p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 11935221]; go_component: extracellular [goid GO:0005576] [evidence ISS] [pmid 11747810]; go_component: septum [goid GO:0030428] [evidence IDA] [pmid 12455695]; go_function: glucan 1,3-beta-glucosidase activity [goid GO:0004338] [evidence ISS] [pmid 11747810]; go_process: cytokinesis, completion of separation [goid GO:0007109] [evidence IEP,ISS] [pmid 11747810] --- --- --- --- --- --- S0005350 // DSE4 SGDID:S0005350, Chr XIV from 759097-755744, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020093 // cdna:Genscan chromosome:SGD1:XIV:755744:758653:-1 // ensembl // 11 // --- /// GENEFINDER00000020623 // cdna:GeneFinder chromosome:SGD1:XIV:755744:758635:-1 // ensembl // 11 // --- /// YNR067C // cdna:known chromosome:SGD1:XIV:755744:759097:-1 gene:YNR067C // ensembl // 11 // --- --- No cerevisiae_gene 2.11410525057182 1.16246480708736 1.23850751943406 3.3308374644415 -1.13957375932527 Max fold change at or above threshold 4 3.3308374644415 Max fold change at or above threshold -0.50892768501082 -0.369427054579354 1.49244911500002 -0.614094375409846 56.5049433708191 41.317496671298 0.731219150157323 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1778596_at SPMIT.11.S1 --- 3.32923408608825 --- --- --- --- 4.30092096328735 13.6276407241821 4.74823808670044 2.86123609542847 0.0952147990465164 0.111571997404099 0.0375977009534836 0.030273400247097 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPMIT.11 /GEN=cox2 /DEF=cytochrome c oxidase (subunit 2) --- --- --- --- --- --- SPMIT.11 // |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe|chr mitochondrial|||Manual // sanger // 11 // --- --- No No -3.32923408608825 3.1685401430316 1.58194515662132 1.10400496247929 -1.50316884725421 Max fold change at or above threshold 4 3.32923408608825 Max fold change at or above threshold AAAAPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1773442_at SPAC17A2.12.S1 --- 3.32715006580637 --- --- --- --- 6.1787691116333 4.82282972335815 1.85707557201386 2.90728712081909 0.466064006090164 0.567627012729645 0.533936023712158 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A2.12 /DEF=zinc finger protein --- --- --- --- --- --- SPAC17A2.12 // |||zf-C3HC4 type |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.12834413942224 -1.2811501682732 -1.36969593443633 -3.32715006580637 -2.12526966029159 Max fold change at or above threshold 3 3.32715006580637 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779338_at SPBC354.04.S1 --- 3.32614975219911 --- --- --- --- 0.540168166160584 1.76811480522156 1.79668021202087 1.41908705234528 0.850341975688934 0.624755859375 0.601073980331421 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC354.04 /DEF=dubious --- --- --- --- --- --- SPBC354.04 // |||dubious|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.07151194439334 3.27326731930353 1.5663720612748 3.32614975219911 2.62712085095996 Max fold change at or above threshold 0 3.32614975219911 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770214_at SPAC4H3.11c.S1 --- 3.32509419602216 --- --- --- --- 0.39034977555275 0.887794256210327 0.34989520907402 0.117395102977753 0.932372987270355 0.953857004642487 0.994140982627869 0.99804699420929 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4H3.11c /DEF=hypothetical protein --- --- --- --- --- --- SPAC4H3.11c // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.8220722837479 2.27435574915645 1.27917184081649 -1.11561909231564 -3.32509419602216 Max fold change at or above threshold 0 3.32509419602216 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774570_at YGL071W.S1 Transcription factor involved in iron utilization and homeostasis; binds the consensus site PyPuCACCCPu and activates the expression of target genes in response to changes in iron availability 3.32177127663021 176.77067565918 502.57844543457 RCS1 6827 // high affinity iron ion transport // inferred from mutant phenotype /// 6827 // high affinity iron ion transport // inferred from physical interaction /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from physical interaction /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3700 // transcription factor activity // traceable author statement /// 3700 // transcription factor activity // inferred from direct assay 485.060211181641 207.516784667969 146.024566650391 520.0966796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL071W /GEN=RCS1 /DB_XREF=GI:6321367 /SEG=NC_001139:+372013,374085 /DEF=Involved in iron homeostasis and affects cell size regulation. Activates the expression of its target genes in response to low-iron conditions. /NOTE=Rcs1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11877447]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11877447]; go_function: transcription factor activity [goid GO:0003700] [evidence TAS] [pmid 12196168]; go_process: high affinity iron ion transport [goid GO:0006827] [evidence IMP,IPI] [pmid 8670839]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IMP,IPI] [pmid 8670839] --- --- --- --- --- --- S0003039 // RCS1 SGDID:S0003039, Chr VII from 372015-374087, Verified ORF // sgd // 11 // --- /// Z48004 // S.cerevisiae mRNA for AFT1P. // gb // 11 // --- /// GENSCAN00000019295 // cdna:Genscan chromosome:SGD1:VII:372015:374087:1 // ensembl // 11 // --- /// GENEFINDER00000021753 // cdna:GeneFinder chromosome:SGD1:VII:372717:374087:1 // ensembl // 11 // --- /// YGL071W // cdna:known chromosome:SGD1:VII:372015:374087:1 gene:YGL071W // ensembl // 11 // --- --- No cerevisiae_gene -1.38814631591891 -2.33745049566833 -1.07376858251049 -3.32177127663021 1.07223117398252 Max fold change at or above threshold 4 3.32177127663021 Max fold change at or above threshold 0.763936149148277 -0.694429621796461 -1.01754354693167 0.948037019579851 339.674560546875 190.311259385824 0.560275279607115 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772589_at YGR068C.S1 Hypothetical protein 3.32107248297592 91.1115760803223 283.362121582031 --- --- --- --- 249.718872070313 75.1922378540039 107.030914306641 317.00537109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR068C /GEN=VHT1 /DB_XREF=GI:6321506 /SEG=NC_001139:-625326,627086 /DEF=Hypothetical ORF /NOTE=Ygr068cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 1.39999997615814 --- S0003300 // YGR068C SGDID:S0003300, Chr VII from 627088-625328, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019392 // cdna:Genscan chromosome:SGD1:VII:625328:627088:-1 // ensembl // 11 // --- /// GENEFINDER00000021770 // cdna:GeneFinder chromosome:SGD1:VII:625328:626662:-1 // ensembl // 11 // --- /// YGR068C // cdna:known chromosome:SGD1:VII:625328:627088:-1 gene:YGR068C // ensembl // 11 // --- --- No cerevisiae_gene -1.12203783695174 -3.32107248297592 -1.30054656794145 -2.33314714433696 1.26944899464583 Max fold change at or above threshold 4 3.32107248297592 Max fold change at or above threshold 0.542939866641613 -0.973615817609351 -0.696952453475319 1.12762840444306 187.236848831177 115.08092714875 0.614627557914702 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777053_at YPR026W.S1 Vacuolar acid trehalase, required for trehalose utilization 3.32067933631203 1695.82470703125 1813.33959960938 ATH1 5993 // trehalose catabolism // inferred from mutant phenotype /// 5993 // trehalose catabolism // inferred from direct assay /// 5993 // trehalose catabolism // inferred from sequence similarity /// 6950 // response to stress // inferred from mutant phenotype 324 // vacuole (sensu Fungi) // inferred from mutant phenotype 4555 // alpha,alpha-trehalase activity // inferred from mutant phenotype 1839.19201660156 1726.4052734375 1665.244140625 1787.48718261719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR026W /GEN=ATH1 /DB_XREF=GI:6325283 /SEG=NC_001148:+615374,619009 /DEF=Vacuolar acid trehalase, required for trehalose utilization /NOTE=Ath1p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IMP] [pmid 7502577]; go_function: alpha,alpha-trehalase activity [goid GO:0004555] [evidence IMP] [pmid 7502577]; go_process: response to stress [goid GO:0006950] [evidence IMP] [pmid 8633854]; go_process: trehalose catabolism [goid GO:0005993] [evidence IMP] [pmid 7502577]; go_process: trehalose catabolism [goid GO:0005993] [evidence IDA,ISS] [pmid 8764988] --- --- --- --- --- S0006230 // span:47-69 // numtm:1 S0006230 // ATH1 SGDID:S0006230, Chr XVI from 615376-619011, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020828 // cdna:GeneFinder chromosome:SGD1:XVI:615376:619011:1 // ensembl // 11 // --- /// GENSCAN00000017206 // cdna:Genscan chromosome:SGD1:XVI:615541:619011:1 // ensembl // 11 // --- /// YPR026W // cdna:known chromosome:SGD1:XVI:615376:619011:1 gene:YPR026W // ensembl // 11 // --- --- No cerevisiae_gene -3.32067933631203 -1.06533039773418 1.06187402769598 -1.1044578820204 -1.02892598866565 Max fold change at or above threshold 4 3.32067933631203 Max fold change at or above threshold 1.12342177999867 -0.374123291601781 -1.18620058408667 0.436902095689778 1754.58215332031 75.3144231201839 0.0429244210524206 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773599_at SPCC576.05.S1 --- 3.32062770608644 --- --- --- --- 1.27477240562439 2.32275414466858 1.76074075698853 0.383895009756088 0.943848013877869 0.725830018520355 0.753906011581421 0.991943001747131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC576.05 /DEF=SAC3GANp family --- --- --- --- --- --- SPCC576.05 // |||SAC3/GANp family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.11766720287695 1.82209321006669 -1.24008434400134 1.38121969790059 -3.32062770608644 Max fold change at or above threshold 0 3.32062770608644 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772558_at YBR067C.S1 Major cell wall mannoprotein with possible lipase activity; transcription is induced by heat- and cold-shock; member of the Srp1p/Tip1p family of serine-alanine-rich proteins 3.3202018293534 7188.38818359375 2690.14880371094 TIP1 7047 // cell wall organization and biogenesis // inferred from direct assay 9277 // cell wall (sensu Fungi) // inferred from direct assay 5199 // structural constituent of cell wall // inferred from direct assay /// 16298 // lipase activity // inferred from sequence similarity 2719.99389648438 9030.9287109375 5345.84765625 2660.3037109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR067C /GEN=TIP1 /DB_XREF=GI:6319541 /SEG=NC_001134:-372063,372695 /DEF=cold- and heat-shock induced protein of the Srp1p/Tip1p family of serine-alanine-rich proteins /NOTE=Tip1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10216230]; go_function: lipase activity [goid GO:0016298] [evidence ISS] [pmid 9818717]; go_function: structural constituent of cell wall [goid GO:0005199] [evidence IDA] [pmid 10216230]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IDA] [pmid 10216230] --- --- --- --- --- --- S0000271 // TIP1 SGDID:S0000271, Chr II from 372732-372100, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021192 // cdna:Genscan chromosome:SGD1:II:372100:372732:-1 // ensembl // 11 // --- /// GENEFINDER00000022154 // cdna:GeneFinder chromosome:SGD1:II:372100:372732:-1 // ensembl // 11 // --- /// YBR067C // cdna:known chromosome:SGD1:II:372100:372732:-1 gene:YBR067C // ensembl // 11 // --- --- No cerevisiae_gene 1.92205164752657 3.3202018293534 1.19509069799692 1.96538957795441 -1.02243735754736 Max fold change at or above threshold 4 3.3202018293534 Max fold change at or above threshold -0.739404325851419 1.36323430567606 0.135461556676847 -0.759291536501491 4939.26849365234 3001.43577684982 0.607668074879324 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772306_at SPCC16C4.10.S1 --- 3.32002791880757 --- --- --- --- 15.3940467834473 18.601921081543 4.63672208786011 9.21438598632813 0.0805663987994194 0.149657994508743 0.398925989866257 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16C4.10 /DEF=6-phosphogluconolactonase (predicted) --- --- --- --- --- --- SPCC16C4.10 // |||6-phosphogluconolactonase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.58360852423835 1.20838408140639 -1.24852251695911 -3.32002791880757 -1.67065356349172 Max fold change at or above threshold 4 3.32002791880757 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771543_at SPAC30.02c.S1 --- 3.3193106554884 --- --- --- --- 1.1926783323288 0.977784335613251 2.28908252716064 0.627425253391266 0.943848013877869 0.969726979732513 0.870360970497131 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30.02c /DEF=polynucleotide kinase (predicted) --- --- --- --- --- --- SPAC30.02c // |||elongator associated protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.3193106554884 -1.21977647717251 -1.66733288359663 1.91927904206244 -1.90090903399617 Max fold change at or above threshold 0 3.3193106554884 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778291_at YBR264C.S1 GTP binding protein that contains the PEST signal sequence specific for proteolytic enzymes; may be involved in vesicular transport; overexpression leads to accumulation of Golgi-like cisternae with budding vesicles 3.31866154351346 315.942031860352 772.158508300781 YPT10 7030 // Golgi organization and biogenesis // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay 3924 // GTPase activity // inferred from sequence similarity /// 19001 // guanyl nucleotide binding // inferred from direct assay 768.892700195313 231.687591552734 400.196472167969 775.42431640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR264C /GEN=YPT10 /DB_XREF=GI:37362623 /SEG=NC_001134:-737727,738326 /DEF=similar to Rab proteins and other small GTP-binding proteins /NOTE=Ypt10p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: guanyl nucleotide binding [goid GO:0019001] [evidence IDA] [pmid 10394895]; go_process: Golgi organization and biogenesis [goid GO:0007030] [evidence IGI] [pmid 10394895] --- --- --- --- --- --- S0000468 // YPT10 SGDID:S0000468, Chr II from 738364-737765, reverse complement, Verified ORF // sgd // 11 // --- /// YBR264C // cdna:known chromosome:SGD1:II:737765:738364:-1 gene:YBR264C // ensembl // 11 // --- --- No cerevisiae_gene -1.00748749491659 -3.31866154351346 1.52654145595751 -1.9212880514164 1.00849483446686 Max fold change at or above threshold 4 3.31866154351346 Max fold change at or above threshold 0.825881926126801 -1.14735768716357 -0.528397827937014 0.849873588973787 544.050270080566 272.245248384604 0.50040458273146 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777886_at YNL040W.S1 Hypothetical protein 3.3185768837365 309.197288513184 174.826011657715 --- --- 5737 // cytoplasm // inferred from direct assay --- 142.078063964844 235.42317199707 382.971405029297 207.573959350586 0.00195312988944352 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL040W /GEN=COG6 /DB_XREF=GI:6324288 /SEG=NC_001146:+553378,554748 /DEF=Hypothetical ORF /NOTE=Ynl040wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004985 // YNL040W SGDID:S0004985, Chr XIV from 553379-554749, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020003 // cdna:Genscan chromosome:SGD1:XIV:553379:554749:1 // ensembl // 11 // --- /// YNL040W // cdna:known chromosome:SGD1:XIV:553379:554749:1 gene:YNL040W // ensembl // 11 // --- GENEFINDER00000020707 // ensembl // 2 // Cross Hyb Matching Probes No cerevisiae_gene 3.3185768837365 1.6569987331424 1.19209507059649 2.69549988465539 1.46098527498199 Max fold change at or above threshold 4 3.3185768837365 Max fold change at or above threshold -0.981728767791268 -0.0647239704529159 1.38476213954909 -0.338309401304904 242.011650085449 101.79347840182 0.420613959558883 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770887_at YKL187C.S1 Hypothetical protein 3.31756398544124 800.217529296875 1236.82116699219 --- --- 5739 // mitochondrion // inferred from direct assay --- 1225.26806640625 873.259582519531 727.175476074219 1248.37426757813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL187C /GEN=PXA2 /DB_XREF=GI:6322661 /SEG=NC_001143:-89289,91541 /DEF=Hypothetical ORF /NOTE=Ykl187cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001670 // span:13-35,546-568,577-606,626-648 // numtm:4 S0001670 // YKL187C SGDID:S0001670, Chr XI from 91541-89289, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018278 // cdna:Genscan chromosome:SGD1:XI:89289:91541:-1 // ensembl // 11 // --- /// GENEFINDER00000023062 // cdna:GeneFinder chromosome:SGD1:XI:89289:91541:-1 // ensembl // 11 // --- /// YKL187C // cdna:known chromosome:SGD1:XI:89289:91541:-1 gene:YKL187C // ensembl // 11 // --- --- No cerevisiae_gene -3.31756398544124 -1.40309719003724 1.56112651129835 -1.68496890602124 1.01885807833028 Max fold change at or above threshold 4 3.31756398544124 Max fold change at or above threshold 0.797629693278859 -0.560407354760761 -1.12399498904727 0.886772650529176 1018.51934814453 259.203888726642 0.254490883456305 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777349_at SPCC188.02.S1 --- 3.31746200688104 --- --- --- --- 5.36720943450928 9.90071201324463 17.805513381958 9.5393533706665 0.194580003619194 0.030273400247097 0.0952147990465164 0.018554700538516 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC188.02 /GEN=par1 /DEF=protein phosphatase regulatory subunit (PMID 10757751) --- --- --- --- --- --- SPCC188.02 // |par1||protein phosphatase regulatory subunit |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.12776427270645 1.84466660637212 1.06633597059806 3.31746200688104 1.77733950706894 Max fold change at or above threshold 4 3.31746200688104 Max fold change at or above threshold AAPAAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1774380_at SPBC365.08c.S1 --- 3.31540354360492 --- --- --- --- 10.3184013366699 5.77876901626587 6.84127521514893 3.11226105690002 0.04443359375 0.0805663987994194 0.0561522990465164 0.064208984375 P A M M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC365.08c /DEF=Der1-like (degradation in the ER) family --- --- --- --- --- --- SPBC365.08c // |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.90293468078493 -1.78557082098732 -3.14616282519433 -1.50825701527421 -3.31540354360492 Max fold change at or above threshold 4 3.31540354360492 Max fold change at or above threshold PAAMMM No 4 0 PAMM 1 1 2 No No x = 1
1779491_at YPL226W.S1 ATP binding cassette family member; Asn/Gln-rich rich region supports [NU+] prion formation, susceptibility to [PSI+] prion induction and aggregation of a fragment of the human Machado-Joseph Disease protein 3.31377207813767 563.636611938477 1659.30035400391 NEW1 --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 5524 // ATP binding // inferred from sequence similarity /// 16887 // ATPase activity // inferred from sequence similarity 1593.92993164063 481.001678466797 646.271545410156 1724.67077636719 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL226W /GEN=NEW1 /DB_XREF=GI:6325030 /SEG=NC_001148:+121767,125357 /DEF=This gene encodes a protein with an Q/N-rich amino terminal domain that acts as a prion, termed [NU]+. /NOTE=New1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence ISS] [pmid 10581358]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006147 // NEW1 SGDID:S0006147, Chr XVI from 121767-125357, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020880 // cdna:GeneFinder chromosome:SGD1:XVI:121767:125357:1 // ensembl // 11 // --- /// GENSCAN00000017012 // cdna:Genscan chromosome:SGD1:XVI:122379:125357:1 // ensembl // 11 // --- /// YPL226W // cdna:known chromosome:SGD1:XVI:121767:125357:1 gene:YPL226W // ensembl // 11 // --- --- No cerevisiae_gene 1.59694332916152 -3.31377207813767 -1.02650377894862 -2.46634706875271 1.08202421080831 Max fold change at or above threshold 4 3.31377207813767 Max fold change at or above threshold 0.755729478637858 -0.987565640281941 -0.728686281684256 0.96052244332834 1111.46848297119 638.404961440742 0.574379724861068 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774867_at SPBC29B5.03c.S1 --- 3.31326613277791 --- --- --- --- 3.22110772132874 4.70449638366699 10.6723871231079 2.53844380378723 0.303710997104645 0.533936023712158 0.129638999700546 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29B5.03c /GEN=rpl26 /DEF=60S ribosomal protein L26 --- --- --- --- --- --- SPBC29B5.03c // |rpl26||60S ribosomal protein L26|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.5267909939857 1.46052128356836 -1.6447120020301 3.31326613277791 -1.26893008879023 Max fold change at or above threshold 4 3.31326613277791 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775310_at SPCC132.03.S1 --- 3.31220289633 --- --- --- --- 5.46801233291626 1.65086877346039 4.62183666229248 2.36504530906677 0.111571997404099 0.334473013877869 0.149657994508743 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC132.03 /DEF=hypothetical protein --- --- --- --- --- --- SPCC132.03 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.35192857434993 -3.31220289633 -1.36415641807337 -1.18308212350457 -2.31201166081418 Max fold change at or above threshold 2 3.31220289633 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772656_at SPAPB21F2.02.S1 --- 3.3116571514452 --- --- --- --- 1.28055131435394 2.08220839500427 2.76812481880188 2.65056967735291 0.780517995357513 0.533936023712158 0.432372987270355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB21F2.02 /DEF=similar to A. nidulans dopA which causes delayed and asynchronous morphogenesis during asexual reproduction --- --- --- --- --- --- SPAPB21F2.02 // |||A. nidulans dopA homolog|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.3116571514452 1.62602495633279 -1.08152590592534 2.16166645395108 2.06986603944892 Max fold change at or above threshold 2 3.3116571514452 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772804_at YML101C.S1 Protein of unknown function; has a CUE domain that binds ubiquitin, which may facilitate intramolecular monoubiquitination 3.31037517594999 1918.84521484375 698.889404296875 CUE4 --- 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay --- 605.842041015625 2005.564453125 1832.1259765625 791.936767578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML101C /GEN=CUE4 /DB_XREF=GI:6323536 /SEG=NC_001145:-69735,70088 /DEF=Protein of unknown function; has a CUE domain that binds ubiquitin, which may facilitate intramolecular monoubiquitination /NOTE=Cue4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence ND] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004568 // span:5-22 // numtm:1 S0004568 // CUE4 SGDID:S0004568, Chr XIII from 70088-69735, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000018633 // cdna:Genscan chromosome:SGD1:XIII:69735:70055:-1 // ensembl // 9 // --- /// YML101C // cdna:known chromosome:SGD1:XIII:69735:70088:-1 gene:YML101C // ensembl // 10 // --- --- No cerevisiae_gene -1.2051082833472 3.31037517594999 1.2674446883353 3.02409844898045 1.30716707320366 Max fold change at or above threshold 4 3.31037517594999 Max fold change at or above threshold -0.987454693131644 0.978566340167006 0.734958257624918 -0.72606990466028 1308.86730957031 711.956987439183 0.543948941373523 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769470_at SPAC30D11.12.S1 --- 3.30964486854028 --- --- --- --- 2.88571691513062 3.59963774681091 7.75521278381348 2.02164077758789 0.466064006090164 0.432372987270355 0.366210997104645 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30D11.12 /GEN=rpl3802 /DEF=60S ribosomal protein L38 --- --- --- --- --- --- SPAC30D11.12 // |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.19806382745373 1.24739808258288 -3.30964486854028 2.68744752582997 -1.42741329078932 Max fold change at or above threshold 3 3.30964486854028 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774492_at SPAC31A2.04c.S1 --- 3.30904686874381 --- --- --- --- 3.74899482727051 12.4055995941162 5.21319580078125 3.87804651260376 0.194580003619194 0.0805663987994194 0.0952147990465164 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31A2.04c /DEF=20S proteasome component (beta 4) --- --- --- --- --- --- SPAC31A2.04c // |||20S proteasome component |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.46169258727696 3.30904686874381 3.03214209944987 1.39055828054497 1.0344230097077 Max fold change at or above threshold 4 3.30904686874381 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777501_at SPBC11B10.01.S1 --- 3.30840741413585 --- --- --- --- 1.49198961257935 1.85139036178589 1.98239386081696 0.505655646324158 0.567627012729645 0.725830018520355 0.533936023712158 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11B10.01 /DEF=glycosyl transferase family 1 --- --- --- --- --- --- SPBC11B10.01 // ||SPBC32H8.14|mannosyltransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 1.05978283623566 1.24088689772123 -3.30840741413585 1.32869146279765 -2.95060407893257 Max fold change at or above threshold 0 3.30840741413585 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780124_at SPAC2F7.13c.S1 --- 3.30670460301504 --- --- --- --- 2.17316555976868 1.04016137123108 7.18601655960083 4.68313360214233 0.432372987270355 0.780517995357513 0.274170011281967 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F7.13c /DEF=tryptophan-tRNA ligase (predicted) --- --- --- --- --- --- SPAC2F7.13c // |||tryptophan-tRNA ligase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.84012416130613 -2.08925809001793 1.60794333069626 3.30670460301504 2.154982431546 Max fold change at or above threshold 2 3.30670460301504 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776650_at YKL106W.S1 Mitochondrial aspartate aminotransferase, catalyzes the conversion of oxaloacetate to aspartate in aspartate and asparagine biosynthesis 3.30498515087536 170.194747924805 523.552856445313 AAT1 6532 // aspartate biosynthesis // inferred from curator /// 6533 // aspartate catabolism // traceable author statement /// 19266 // asparagine biosynthesis from oxaloacetate // inferred from curator 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 4069 // aspartate transaminase activity // inferred from sequence similarity 542.775024414063 176.160308837891 164.229187011719 504.330688476563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL106W /GEN=AAT1 /DB_XREF=GI:6322743 /SEG=NC_001143:+237182,238537 /DEF=Mitochondrial aspartate aminotransferase, catalyzes the conversion of oxaloacetate to aspartate in aspartate and asparagine biosynthesis /NOTE=Aat1p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 1482685]; go_function: aspartate transaminase activity [goid GO:0004069] [evidence ISS] [pmid 1482685]; go_process: asparagine biosynthesis from oxaloacetate [goid GO:0019266] [evidence IC]; go_process: aspartate biosynthesis [goid GO:0006532] [evidence IC]; go_process: aspartate catabolism [goid GO:0006533] [evidence TAS] --- --- --- ec // AATM_YEAST // (Q01802) Aspartate aminotransferase, mitochondrial precursor (EC 2.6.1.1) (Transaminase A) // 0.0 /// ec // 1A11_CUCMA // (P23599) 1-aminocyclopropane-1-carboxylate synthase CMW33 (EC 4.4.1.14) (ACC synthase) (S-adenosyl-L-methionine methylthioadenosine-lyase) // 0.42 --- --- S0001589 // AAT1 SGDID:S0001589, Chr XI from 237182-238537, Verified ORF // sgd // 11 // --- /// GENSCAN00000018337 // cdna:Genscan chromosome:SGD1:XI:237182:238537:1 // ensembl // 11 // --- /// GENEFINDER00000023022 // cdna:GeneFinder chromosome:SGD1:XI:237914:238537:1 // ensembl // 11 // --- /// YKL106W // cdna:known chromosome:SGD1:XI:237182:238537:1 gene:YKL106W // ensembl // 11 // --- --- No cerevisiae_gene 1.35370072460655 -3.08114255699645 -1.51633739295016 -3.30498515087536 -1.07622842871932 Max fold change at or above threshold 4 3.30498515087536 Max fold change at or above threshold 0.957146279970663 -0.834082519949928 -0.892376331197556 0.76931257117682 346.873802185059 204.672186820815 0.590047981518137 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775934_at YCR108C.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /// Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /// --- /// Identified by fungal homology and RT-PCR 3.30480037160917 129.326015472412 336.331771850586 --- --- --- --- 358.301483154297 150.233535766602 108.418495178223 314.362060546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR108C /GEN=AAD3 /DB_XREF=GI:33438777 /SEG=NC_001135:-315993,316184 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ycr108cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028709 // span:26-48 // numtm:1 S0028536 // YCR108C SGDID:S0028536, Chr III from 316184-315993, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YCR108C // cdna:known chromosome:SGD1:III:315993:316184:-1 gene:YCR108C // ensembl // 11 // --- GENEFINDER00000020176 // ensembl // 4 // Cross Hyb Matching Probes /// GENEFINDER00000024310 // ensembl // 1 // Cross Hyb Matching Probes /// GENEFINDER00000024625 // ensembl // 1 // Cross Hyb Matching Probes /// YJR162C // ensembl // 1 // Cross Hyb Matching Probes /// YLL065W // ensembl // 1 // Cross Hyb Matching Probes No cerevisiae_gene -2.89185165225163 -2.38496339266716 -2.19000730915 -3.30480037160917 -1.13977330003176 Max fold change at or above threshold 4 3.30480037160917 Max fold change at or above threshold 1.02801536457422 -0.676715905056975 -1.01931267753863 0.668013218021387 232.828893661499 122.053223927024 0.524218545248392 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779009_at SPAC22H12.04c.S1 --- 3.30401542151281 --- --- --- --- 1.26037156581879 4.16428709030151 3.53204369544983 2.65432572364807 0.696289002895355 0.665526986122131 0.919434010982513 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22H12.04c /GEN=rps102 /DEF=40S ribosomal protein S3a --- --- --- --- --- --- AF127914 // Schizosaccharomyces pombe ribosomal protein S1B (rps1-2) mRNA, complete cds. // gb // 10 // --- /// SPAC22H12.04c // |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.41934166121004 3.30401542151281 2.48164968797655 2.80238287758838 2.10598667538467 Max fold change at or above threshold 3 3.30401542151281 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771023_at YDR191W.S1 Member of the Sir2 family of NAD(+)-dependent protein deacetylases; involved along with Hst3p in silencing at telomeres, cell cycle progression, radiation resistance, genomic stability and short-chain fatty acid metabolism 3.30212853663675 219.716773986816 673.035614013672 HST4 6348 // chromatin silencing at telomere // inferred from genetic interaction /// 46459 // short-chain fatty acid metabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3677 // DNA binding // inferred from sequence similarity 664.943359375 238.065444946289 201.368103027344 681.127868652344 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR191W /GEN=HST4 /DB_XREF=GI:6320397 /SEG=NC_001136:+842330,843442 /DEF=Homolog of SIR2 /NOTE=Hst4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: DNA binding [goid GO:0003677] [evidence ISS] [pmid 7498786]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IGI] [pmid 7498786]; go_process: short-chain fatty acid metabolism [goid GO:0046459] [evidence IMP] [pmid 12618394] --- --- --- --- --- --- S0002599 // HST4 SGDID:S0002599, Chr IV from 842332-843444, Verified ORF // sgd // 11 // --- /// GENSCAN00000025243 // cdna:Genscan chromosome:SGD1:IV:842332:843444:1 // ensembl // 11 // --- /// YDR191W // cdna:known chromosome:SGD1:IV:842332:843444:1 gene:YDR191W // ensembl // 11 // --- --- No cerevisiae_gene 1.02959722911667 -2.79311161485457 -1.17523107250739 -3.30212853663675 1.02433968104074 Max fold change at or above threshold 4 3.30212853663675 Max fold change at or above threshold 0.833476819195257 -0.794365339496346 -0.934305772740653 0.895194293041741 446.376194000244 262.235445954919 0.587476324857001 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774140_at SPCC1235.04c.S1 --- 3.30166546919989 --- --- --- --- 4.41343784332275 14.5716953277588 2.89211416244507 5.41384887695313 0.466064006090164 0.111571997404099 0.24609400331974 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1235.04c /DEF=FMN adenylyltransferase activity (predicted) --- --- --- --- --- --- SPCC1235.04c // |||FAD synthetase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.28272892773603 3.30166546919989 -1.14487906386517 -1.52602476784371 1.22667386947432 Max fold change at or above threshold 4 3.30166546919989 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776536_at YNL187W.S1 Non-essential protein with putative leucine-rich nuclear export signal (NES) sequence that fits the consensus sequence recognized by Crm1p 3.30163691732085 44.8048753738403 90.2823677062988 --- 6810 // transport // inferred from mutant phenotype /// 6810 // transport // inferred from sequence similarity 5634 // nucleus // inferred from mutant phenotype /// 5634 // nucleus // inferred from sequence similarity --- 94.3903427124023 28.5889530181885 61.0207977294922 86.1743927001953 0.000244141003349796 0.0239257998764515 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL187W /GEN=KAR1 /DB_XREF=GI:6324142 /SEG=NC_001146:+287994,289067 /DEF=Non-essential protein with putative leucine-rich nuclear export signal (NES) sequence that fits the consensus sequence recognized by Crm1p /NOTE=Ynl187wp; go_component: nucleus [goid GO:0005634] [evidence ISS,IMP] [pmid 15020406]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: transport [goid GO:0006810] [evidence ISS,IMP] [pmid 15020406] --- --- --- --- --- --- S0005131 // YNL187W SGDID:S0005131, Chr XIV from 287994-289067, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019891 // cdna:Genscan chromosome:SGD1:XIV:287994:289067:1 // ensembl // 11 // --- /// GENEFINDER00000020411 // cdna:GeneFinder chromosome:SGD1:XIV:287994:289067:1 // ensembl // 11 // --- /// YNL187W // cdna:known chromosome:SGD1:XIV:287994:289067:1 gene:YNL187W // ensembl // 11 // --- --- No cerevisiae_gene -1.59913427568003 -3.30163691732085 -1.15102184925549 -1.5468552727029 -1.09534096794614 Max fold change at or above threshold 4 3.30163691732085 Max fold change at or above threshold 0.907089861410321 -1.31618996018082 -0.220391432844254 0.629491531614749 67.5436215400696 29.5965397855866 0.438184081794144 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1775961_at SPAC1635.01.S1 --- 3.29950291309579 --- --- --- --- 4.82304573059082 6.51860427856445 4.24263572692871 4.7935938835144 0.334473013877869 0.32568359375 0.219482004642487 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1635.01 /DEF=voltage-dependent anion-selective channel --- --- --- --- --- --- SPAC1635.01 // |||voltage-dependent anion-selective channel|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.28681852780722 1.35155348770992 -3.29950291309579 -1.13680410976086 -1.0061440013051 Max fold change at or above threshold 4 3.29950291309579 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779250_at SPAC167.05.S1 --- 3.29931377222798 --- --- --- --- 0.471298009157181 1.05310678482056 0.706673204898834 0.584473550319672 0.850341975688934 0.962401986122131 0.870360970497131 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC167.05 /DEF=Usp (universal stress protein) domain --- --- --- --- --- --- SPAC167.05 // ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 3.29931377222798 2.2344817172129 2.05969949545777 1.49941903247708 1.24013583542371 Max fold change at or above threshold 0 3.29931377222798 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778319_at YNL289W.S1 Pho85 cyclin of the Pcl1,2-like subfamily, involved in entry into the mitotic cell cycle and regulation of morphogenesis, localizes to sites of polarized cell growth 3.29806693277074 14.2582125663757 48.6911010742188 PCL1 7049 // cell cycle // traceable author statement 307 // cyclin-dependent protein kinase holoenzyme complex // traceable author statement 16538 // cyclin-dependent protein kinase regulator activity // traceable author statement 42.9111824035645 15.5054149627686 13.0110101699829 54.471019744873 0.000244141003349796 0.000732421991415322 0.0375977009534836 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL289W /GEN=PCL1 /DB_XREF=GI:6324040 /SEG=NC_001146:+87895,88734 /DEF=G(sub)1 cyclin that associates with PHO85 /NOTE=Pcl1p; go_component: cyclin-dependent protein kinase holoenzyme complex [goid GO:0000307] [evidence TAS] [pmid 11602261]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS] [pmid 11602261]; go_process: cell cycle [goid GO:0007049] [evidence TAS] [pmid 11602261] --- --- --- --- --- --- S0005233 // PCL1 SGDID:S0005233, Chr XIV from 87895-88734, Verified ORF // sgd // 11 // --- /// GENSCAN00000019809 // cdna:Genscan chromosome:SGD1:XIV:87895:88734:1 // ensembl // 11 // --- /// YNL289W // cdna:known chromosome:SGD1:XIV:87895:88734:1 gene:YNL289W // ensembl // 11 // --- --- No cerevisiae_gene 1.89529971306551 -2.76749654921215 1.18148195527228 -3.29806693277074 1.26938985816313 Max fold change at or above threshold 4 3.29806693277074 Max fold change at or above threshold 0.5590334164478 -0.780598947529753 -0.902528953558415 1.12409448464037 31.4746568202972 20.4576779254753 0.649973025671964 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1776088_at YNR009W.S1 Hypothetical protein 3.29799406267043 126.218799591064 168.98664855957 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 147.028274536133 119.370399475098 133.067199707031 190.945022583008 0.000244141003349796 0.00805663969367743 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR009W /GEN=LRO1 /DB_XREF=GI:6324336 /SEG=NC_001146:+642689,643438 /DEF=Hypothetical ORF /NOTE=Ynr009wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005292 // YNR009W SGDID:S0005292, Chr XIV from 642690-643439, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020044 // cdna:Genscan chromosome:SGD1:XIV:642699:643439:1 // ensembl // 11 // --- /// GENEFINDER00000020569 // cdna:GeneFinder chromosome:SGD1:XIV:642699:643439:1 // ensembl // 11 // --- /// YNR009W // cdna:known chromosome:SGD1:XIV:642690:643439:1 gene:YNR009W // ensembl // 11 // --- --- No cerevisiae_gene 3.29799406267043 -1.23169793502119 -1.38794049036321 -1.10491747673235 1.29869593576766 Max fold change at or above threshold 4 3.29799406267043 Max fold change at or above threshold -0.0185170495131702 -0.91005269711983 -0.468544242910372 1.39711398954337 147.602724075317 31.0227360344851 0.210177259456642 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1772395_at SPBC17G9.02c.S1 --- 3.29702180361719 --- --- --- --- 4.44303512573242 14.6487836837769 10.3097858428955 12.2131023406982 0.398925989866257 0.111571997404099 0.0952147990465164 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17G9.02c /DEF=involved in RNA elongation from Pol II promoter (ISS) --- --- --- --- --- --- SPBC17G9.02c // |||RNA pol II accessory factor, Cdc73 family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.10397693856437 3.29702180361719 1.26728652502973 2.32043761778633 2.74881966833088 Max fold change at or above threshold 4 3.29702180361719 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777583_at SPAC10F6.01c.S1 --- 3.29672250673794 --- --- --- --- 4.02994060516357 7.89114761352539 13.2855958938599 5.08067274093628 0.567627012729645 0.432372987270355 0.0952147990465164 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC10F6.01c /DEF=sulfite reductase (predicted) --- --- --- --- --- --- SPAC10F6.01c // ||SPAC4C5.05c|sulfite reductase beta subunit |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.1681313553095 1.95813000405377 2.19955751699305 3.29672250673794 1.26073141981954 Max fold change at or above threshold 4 3.29672250673794 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777714_at YPL265W.S1 Dicarboxylic amino acid permease, mediates high-affinity and high-capacity transport of L-glutamate and L-aspartate; also a transporter for Gln, Asn, Ser, Ala, and Gly 3.29552390636404 1223.73944091797 707.875549316406 DIP5 6865 // amino acid transport // inferred from direct assay 5886 // plasma membrane // inferred from sequence similarity 15171 // amino acid transporter activity // inferred from direct assay /// 15359 // amino acid permease activity // inferred from direct assay 691.192321777344 1073.48754882813 1373.99133300781 724.558776855469 0.00122069998178631 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL265W /GEN=DIP5 /DB_XREF=GI:6324990 /SEG=NC_001148:+41043,42869 /DEF=Dicarboxylic amino acid permease, mediates high-affinity and high-capacity transport of L-glutamate and L-aspartate; also a transporter for Gln, Asn, Ser, Ala, and Gly /NOTE=Dip5p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 10654085]; go_function: amino acid permease activity [goid GO:0015359] [evidence IDA] [pmid 12073087]; go_function: amino acid transporter activity [goid GO:0015171] [evidence IDA] [pmid 10654085]; go_process: amino acid transport [goid GO:0006865] [evidence IDA] [pmid 10654085] --- --- --- --- --- S0006186 // span:91-113,120-142,157-179,200-219,234-253,286-308,323-345,423-445,455-477,500-522,532-551 // numtm:11 S0006186 // DIP5 SGDID:S0006186, Chr XVI from 41043-42869, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020903 // cdna:GeneFinder chromosome:SGD1:XVI:41064:42869:1 // ensembl // 11 // --- /// YPL265W // cdna:known chromosome:SGD1:XVI:41043:42869:1 gene:YPL265W // ensembl // 11 // --- --- No cerevisiae_gene 3.29552390636404 1.55309530358749 1.85532882481735 1.98785676535687 1.04827376408396 Max fold change at or above threshold 4 3.29552390636404 Max fold change at or above threshold -0.851786499003976 0.333996169430496 1.26608256200247 -0.748292232428991 965.807495117188 322.399067913099 0.333812969502769 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773014_at SPCC663.08c.S1 --- 3.29465485373969 --- --- --- --- 4.145827293396 13.6590700149536 11.4469013214111 4.21700429916382 0.533936023712158 0.334473013877869 0.24609400331974 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC663.08c /DEF=short chain dehydrogenase (predicted) --- --- --- --- --- --- SPCC663.08c // |||short chain dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.69528516599294 3.29465485373969 1.42075961276357 2.7610656477768 1.01716834801131 Max fold change at or above threshold 4 3.29465485373969 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770245_at YNR027W.S1 Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern 3.29376642796987 99.1395263671875 301.709823608398 BUD17 282 // bud site selection // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 271.230377197266 82.3465728759766 115.932479858398 332.189270019531 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR027W /GEN=BUD17 /DB_XREF=GI:6324354 /SEG=NC_001146:+674922,675875 /DEF=Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern /NOTE=Bud17p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: bud site selection [goid GO:0000282] [evidence IMP] [pmid 11452010] --- --- --- --- --- --- S0005310 // BUD17 SGDID:S0005310, Chr XIV from 674923-675876, Verified ORF // sgd // 11 // --- /// GENSCAN00000020057 // cdna:Genscan chromosome:SGD1:XIV:674923:675876:1 // ensembl // 11 // --- /// YNR027W // cdna:known chromosome:SGD1:XIV:674923:675876:1 gene:YNR027W // ensembl // 11 // --- --- No cerevisiae_gene -1.06971309271457 -3.29376642796987 -1.17828819049296 -2.33955469190817 1.22474950428554 Max fold change at or above threshold 4 3.29376642796987 Max fold change at or above threshold 0.588302052617963 -0.981073383554716 -0.702018767891977 1.09479009882873 200.424674987793 120.356034615866 0.600505075650972 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773158_at YOR359W.S1 Protein of unknown function, shows genetic interactions with Vti1p, which is a v-SNARE involved in cis-Golgi membrane traffic 3.29335266994421 106.616943359375 354.048873901367 VTS1 6623 // protein-vacuolar targeting // inferred from genetic interaction 5829 // cytosol // inferred from direct assay 3723 // RNA binding // inferred from direct assay /// 5478 // intracellular transporter activity // inferred from genetic interaction 338.350402832031 102.737373352051 110.496513366699 369.747344970703 0.000244141003349796 0.00292969006113708 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR359W /GEN=VTS1 /DB_XREF=GI:6324935 /SEG=NC_001147:+1011185,1012756 /DEF=Vts1p /NOTE=go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 11445562]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 12858164]; go_function: intracellular transporter activity [goid GO:0005478] [evidence IGI] [pmid 11445562]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IGI] [pmid 11445562] --- --- --- --- --- --- S0005886 // VTS1 SGDID:S0005886, Chr XV from 1011185-1012756, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022617 // cdna:GeneFinder chromosome:SGD1:XV:1011185:1012756:1 // ensembl // 11 // --- /// YOR359W // cdna:known chromosome:SGD1:XV:1011185:1012756:1 gene:YOR359W // ensembl // 11 // --- --- No cerevisiae_gene 1.41267590541988 -3.29335266994421 -1.06105666718984 -3.06209121467177 1.09279416213451 Max fold change at or above threshold 4 3.29335266994421 Max fold change at or above threshold 0.752925327741589 -0.889392139003316 -0.835307816073038 0.971774627334765 230.332908630371 143.463754268515 0.622853916626996 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779511_at YMR316W.S1 Protein of unknown function, involved in invasive and pseudohyphal growth; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 3.2929890912193 3266.47875976563 1215.02630615234 DIA1 1403 // invasive growth (sensu Saccharomyces) // inferred from genetic interaction /// 7124 // pseudohyphal growth // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 1098.95703125 3618.853515625 2914.10400390625 1331.09558105469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR316W /GEN=DIA1 /DB_XREF=GI:6323976 /SEG=NC_001145:+904823,905833 /DEF=Protein of unknown function, involved in invasive and pseudohyphal growth; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Dia1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: invasive growth (sensu Saccharomyces) [goid GO:0001403] [evidence IGI] [pmid 11063681]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 11063681] --- --- --- --- --- --- S0004935 // DIA1 SGDID:S0004935, Chr XIII from 904823-905833, Verified ORF // sgd // 11 // --- /// GENSCAN00000018982 // cdna:Genscan chromosome:SGD1:XIII:904823:905833:1 // ensembl // 11 // --- /// YMR316W // cdna:known chromosome:SGD1:XIII:904823:905833:1 gene:YMR316W // ensembl // 11 // --- GENEFINDER00000022097 // ensembl // 7 // Cross Hyb Matching Probes /// YMR316C-A // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene 1.6301718070756 3.2929890912193 1.38127859156231 2.65169967618445 1.21123532877409 Max fold change at or above threshold 4 3.2929890912193 Max fold change at or above threshold -0.933961291886989 1.12725349871761 0.550785327809252 -0.744077534639873 2240.75253295898 1222.52978964694 0.545588935710161 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777393_at SPBC1347.06c.S1 --- 3.29109949866588 --- --- --- --- 1.30296182632446 4.28817701339722 1.97262942790985 1.39952147006989 0.688720703125 0.601073980331421 0.665526986122131 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1347.06c /GEN=cki1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- U06929 // Schizosaccharomyces pombe SP66 casein kinase-1 (cki1) mRNA, complete cds. // gb // 11 // --- /// SPBC1347.06c // |cki1||serine/threonine protein kinase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.04738522035582 3.29109949866588 -1.70974947403477 1.51395795951633 1.0741078071472 Max fold change at or above threshold 1 3.29109949866588 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776058_at YJR024C.S1 Hypothetical protein 3.29089813079704 257.865478515625 745.209045410156 --- --- 5737 // cytoplasm // inferred from direct assay --- 717.565734863281 218.045562744141 297.685394287109 772.852355957031 0.00195312988944352 0.00805663969367743 0.00292969006113708 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR024C /GEN=LSM8 /DB_XREF=GI:6322484 /SEG=NC_001142:-470144,470878 /DEF=Hypothetical ORF /NOTE=Yjr024cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003785 // YJR024C SGDID:S0003785, Chr X from 470878-470144, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024151 // cdna:Genscan chromosome:SGD1:X:470144:470695:-1 // ensembl // 10 // --- /// GENEFINDER00000024286 // cdna:GeneFinder chromosome:SGD1:X:470144:470878:-1 // ensembl // 11 // --- /// YJR024C // cdna:known chromosome:SGD1:X:470144:470878:-1 gene:YJR024C // ensembl // 11 // --- --- No cerevisiae_gene -1.0309999885119 -3.29089813079704 1.06625046346319 -2.41048351257438 1.07704746535073 Max fold change at or above threshold 4 3.29089813079704 Max fold change at or above threshold 0.760294041789139 -0.997725192975267 -0.717439503786837 0.954870654972965 501.537261962891 284.138058470152 0.566534293699549 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1775195_at YLR373C.S1 Glycosylated integral membrane protein localized to the plasma membrane; plays a role in fructose-1,6-bisphosphatase (FBPase) degradation; involved in FBPase transport from the cytosol to Vid (vacuole import and degradation) vesicles 3.28974635571819 335.287780761719 1047.79595947266 VID22 7039 // vacuolar protein catabolism // inferred from mutant phenotype 5887 // integral to plasma membrane // inferred from direct assay --- 1027.09680175781 312.211547851563 358.364013671875 1068.4951171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR373C /GEN=VID22 /DB_XREF=GI:6323405 /SEG=NC_001144:-868661,871366 /DEF=Vacuole import and degradation /NOTE=Vid22p; go_component: integral to plasma membrane [goid GO:0005887] [evidence IDA] [pmid 11861771]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: vacuolar protein catabolism [goid GO:0007039] [evidence IMP] [pmid 11861771] --- --- --- --- --- --- S0004365 // VID22 SGDID:S0004365, Chr XII from 871366-868661, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018101 // cdna:Genscan chromosome:SGD1:XII:868661:871357:-1 // ensembl // 11 // --- /// GENEFINDER00000024723 // cdna:GeneFinder chromosome:SGD1:XII:868661:871366:-1 // ensembl // 11 // --- /// YLR373C // cdna:known chromosome:SGD1:XII:868661:871366:-1 gene:YLR373C // ensembl // 11 // --- --- No cerevisiae_gene -1.15327757406974 -3.28974635571819 -1.52476936984756 -2.86607126433806 1.04030614773489 Max fold change at or above threshold 4 3.28974635571819 Max fold change at or above threshold 0.814167707816575 -0.920381344045 -0.808400133924536 0.914613770152962 691.541870117188 412.144731876571 0.595979433330234 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776907_at SPCC1393.06c.S1 --- 3.28856218426703 --- --- --- --- 5.06162929534912 4.53909969329834 3.3721718788147 1.5391618013382 0.274170011281967 0.533936023712158 0.24609400331974 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1393.06c /DEF=involved in rRNA processing (implicated) (PMID 12089522) --- --- --- --- --- --- SPCC1393.06c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.05046855845901 -1.11511745441993 -1.08280688275121 -1.50099979397499 -3.28856218426703 Max fold change at or above threshold 3 3.28856218426703 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778647_at SPAC17G8.12.S1 --- 3.28847655963553 --- --- --- --- 0.928849577903748 1.93742024898529 0.757751822471619 2.25989127159119 0.928955078125 0.658447265625 0.932372987270355 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G8.12 /DEF=sequence orphan --- --- --- --- --- --- SPAC17G8.12 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -3.28847655963553 2.08582777564233 -1.26435127223262 -1.22579656077111 2.43300026759055 Max fold change at or above threshold 0 3.28847655963553 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770276_at YNR003C.S1 RNA polymerase III subunit C34; interacts with TFIIIB70 and is a key determinant in pol III recruitment by the preinitiation complex 3.28844819714696 375.341827392578 166.380310058594 RPC34 6383 // transcription from RNA polymerase III promoter // traceable author statement 5634 // nucleus // inferred from direct assay /// 5666 // DNA-directed RNA polymerase III complex // traceable author statement /// 5737 // cytoplasm // inferred from direct assay 3899 // DNA-directed RNA polymerase activity // traceable author statement 143.581420898438 336.475555419922 414.208099365234 189.17919921875 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR003C /GEN=RPC34 /DB_XREF=GI:6324330 /SEG=NC_001146:-634343,635296 /DEF=RNA polymerase III subunit C34; interacts with TFIIIB70 and is a key determinant in pol III recruitment by the preinitiation complex /NOTE=Rpc34p; go_component: DNA-directed RNA polymerase III complex [goid GO:0005666] [evidence TAS] [pmid 8246845]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 8246845]; go_process: transcription from Pol III promoter [goid GO:0006383] [evidence TAS] --- --- --- --- --- --- S0005286 // RPC34 SGDID:S0005286, Chr XIV from 635297-634344, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020040 // cdna:Genscan chromosome:SGD1:XIV:634344:635297:-1 // ensembl // 11 // --- /// GENEFINDER00000020467 // cdna:GeneFinder chromosome:SGD1:XIV:634344:635297:-1 // ensembl // 11 // --- /// YNR003C // cdna:known chromosome:SGD1:XIV:634344:635297:-1 gene:YNR003C // ensembl // 11 // --- --- No cerevisiae_gene 3.28844819714696 2.34344773379787 -1.31572444005081 2.88483075855772 1.31757436327759 Max fold change at or above threshold 4 3.28844819714696 Max fold change at or above threshold -1.00912178452729 0.520216774906158 1.13651014781419 -0.647605138193056 270.861068725586 126.129125125141 0.465659851814748 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774947_at YLR183C.S1 Transcription factor that binds to a number of promoter regions, particularly promoters of some genes involved in pheromone response and cell cycle; potential Cdc28p substrate; expression is induced in G1 by bound SBF 3.28807763805272 61.6270885467529 49.1630668640137 TOS4 83 // G1/S-specific transcription in mitotic cell cycle // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 3700 // transcription factor activity // inferred from physical interaction 43.7032585144043 63.5029449462891 59.7512321472168 54.622875213623 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR183C /GEN=TOS4 /DB_XREF=GI:6323212 /SEG=NC_001144:-520545,522014 /DEF=Transcription factor that binds to a number of promoter regions, particularly promoters of some genes involved in pheromone response and cell cycle; potential Cdc28p substrate; expression is induced in G1 by bound SBF /NOTE=Tos4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: transcription factor activity [goid GO:0003700] [evidence TAS] [pmid 12464632]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 3.29999995231628 --- S0004173 // TOS4 SGDID:S0004173, Chr XII from 522014-520545, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017963 // cdna:Genscan chromosome:SGD1:XII:520545:522014:-1 // ensembl // 11 // --- /// GENEFINDER00000024867 // cdna:GeneFinder chromosome:SGD1:XII:520545:521096:-1 // ensembl // 9 // --- /// YLR183C // cdna:known chromosome:SGD1:XII:520545:522014:-1 gene:YLR183C // ensembl // 11 // --- --- No cerevisiae_gene 3.28807763805272 1.45304828758613 -1.24641487880238 1.36720313721054 1.24985818152712 Max fold change at or above threshold 4 3.28807763805272 Max fold change at or above threshold -1.3591202768753 0.942502324858935 0.506382944722956 -0.0897649927065895 55.3950777053833 8.60249044172838 0.155293408693827 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771091_at YJR150C.S1 Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth 3.28764904006395 18.9749069213867 54.2807903289795 DAN1 15918 // sterol transport // inferred from mutant phenotype 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 57.5328674316406 20.4501152038574 17.499698638916 51.0287132263184 0.001953125 0.0461426004767418 0.014160200022161 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR150C /GEN=DAN1 /DB_XREF=GI:6322610 /SEG=NC_001142:-708726,709622 /DEF=Delayed Anaerobic /NOTE=Dan1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10322008]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: sterol transport [goid GO:0015918] [evidence IMP] [pmid 12077145] --- --- --- --- --- S0003911 // span:7-29 // numtm:1 S0003911 // DAN1 SGDID:S0003911, Chr X from 709622-708726, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024253 // cdna:Genscan chromosome:SGD1:X:708726:709622:-1 // ensembl // 11 // --- /// GENEFINDER00000024414 // cdna:GeneFinder chromosome:SGD1:X:708726:709622:-1 // ensembl // 11 // --- /// YJR150C // cdna:known chromosome:SGD1:X:708726:709622:-1 gene:YJR150C // ensembl // 11 // --- --- No cerevisiae_gene -1.20465988212112 -2.81332730197962 -1.4245216055665 -3.28764904006395 -1.12746067447313 Max fold change at or above threshold 4 3.28764904006395 Max fold change at or above threshold 1.01523351291885 -0.785657132598402 -0.928941470274968 0.699365089954524 36.6278486251831 20.5913403571111 0.562177172015333 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1771744_at YKR052C.S1 Mitochondrial iron transporter of the mitochondrial carrier family (MCF), very similar to and functionally redundant with Mrs3p; functions under low-iron conditions; may transport other cations in addition to iron 3.2874426293873 1561.69439697266 570.528656005859 MRS4 6839 // mitochondrial transport // inferred from sequence similarity /// 8380 // RNA splicing // inferred from genetic interaction /// 48250 // mitochondrial iron ion transport // inferred from direct assay 5739 // mitochondrion // inferred from direct assay 5381 // iron ion transporter activity // inferred from mutant phenotype /// 5386 // carrier activity // inferred from sequence similarity 534.450866699219 1366.41223144531 1756.9765625 606.6064453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR052C /GEN=MRS4 /DB_XREF=GI:6322905 /SEG=NC_001143:-532192,533106 /DEF=Mitochondrial iron transporter of the mitochondrial carrier family (MCF), very similar to and functionally redundant with Mrs3p; functions under low-iron conditions; may transport other cations in addition to iron /NOTE=Mrs4p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 1703236]; go_function: carrier activity [goid GO:0005386] [evidence ISS] [pmid 1703236]; go_function: iron ion transporter activity [goid GO:0005381] [evidence IMP] [pmid 12902335]; go_process: RNA splicing [goid GO:0008380] [evidence IGI] [pmid 8252639]; go_process: iron ion transport [goid GO:0006826] [evidence IMP] [pmid 12902335]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 1703236] --- --- --- --- --- --- S0001760 // MRS4 SGDID:S0001760, Chr XI from 533106-532192, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018461 // cdna:Genscan chromosome:SGD1:XI:532192:533106:-1 // ensembl // 11 // --- /// YKR052C // cdna:known chromosome:SGD1:XI:532192:533106:-1 gene:YKR052C // ensembl // 11 // --- --- No cerevisiae_gene 1.18573158073432 2.55666576028645 2.28579892543125 3.2874426293873 1.13500881579427 Max fold change at or above threshold 4 3.2874426293873 Max fold change at or above threshold -0.893880682417136 0.504895357844369 1.16155088490335 -0.772565560330588 1066.11152648926 594.778106572769 0.557894827881089 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Sp-RIP1-3_at AFFX-r2-Sp-RIP1-3 --- 3.28727073952308 --- --- --- --- 5.46268510818481 5.2661190032959 2.70971083641052 2.77698349952698 0.24609400331974 0.398925989866257 0.5 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=RIP1 ubiquinol-cytochrome c reductase iron-sulpher subunit precursor (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- U40480 // Schizosaccharomyces pombe Rieske iron-sulfur protein (Rip1) mRNA, complete cds. // gb // 10 // --- /// SPBC16H5.06 // |rip1||ubiquinol-cytochrome-c reductase complex subunit 5|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- AFFX_control No -3.28727073952308 -1.03732655960982 -1.03169188077019 -2.01596607091149 -1.96712912018214 Max fold change at or above threshold 4 3.28727073952308 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778836_at SPAC29B12.10c.S1 --- 3.28718618079384 --- --- --- --- 6.34784412384033 5.05620050430298 6.72945547103882 3.85654067993164 0.366210997104645 0.398925989866257 0.24609400331974 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29B12.10c /DEF=OPT family oligopeptide transporter --- --- --- --- --- --- SPAC29B12.10c // |||OPT family oligopeptide transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.28718618079384 -1.25545735744422 -2.9452850726786 1.06011668524835 -1.64599433810532 Max fold change at or above threshold 4 3.28718618079384 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771108_at YHR123W.S1 sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferase; not essential for viability 3.28477312339657 1113.76708984375 371.665420532227 EPT1 6646 // phosphatidylethanolamine biosynthesis // traceable author statement 5783 // endoplasmic reticulum // traceable author statement 4307 // ethanolaminephosphotransferase activity // traceable author statement 340.221343994141 1117.54992675781 1109.98425292969 403.109497070313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR123W /GEN=EPT1 /DB_XREF=GI:6321915 /SEG=NC_001140:+354817,356083 /DEF=sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferase; not essential for viability /NOTE=Ept1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS]; go_function: ethanolaminephosphotransferase activity [goid GO:0004307] [evidence TAS]; go_process: phosphatidylethanolamine biosynthesis [goid GO:0006646] [evidence TAS] --- --- --- --- --- S0001165 // span:50-69,180-202,217-236,265-282,286-308,320-342,347-366 // numtm:7 S0001165 // EPT1 SGDID:S0001165, Chr VIII from 354817-354866,354958-356083, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020174 // cdna:GeneFinder chromosome:SGD1:VIII:355043:356083:1 // ensembl // 11 // --- /// YHR123W // cdna:known chromosome:SGD1:VIII:354817:356083:1 gene:YHR123W // ensembl // 11 // --- --- No cerevisiae_gene -1.39234885689586 3.28477312339657 1.31589703717305 3.26253561842611 1.18484481995714 Max fold change at or above threshold 4 3.28477312339657 Max fold change at or above threshold -0.937708928955885 0.873265402689927 0.855639341577358 -0.7911958153114 742.716255187988 429.232247625087 0.577922247731665 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772844_at SPAC3G9.11c.S1 --- 3.28455719250306 --- --- --- --- 6.11332035064697 4.36652183532715 2.21729111671448 1.88691937923431 0.665526986122131 0.753906011581421 0.828612983226776 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3G9.11c /DEF=pyruvate decarboxylase (predicted) --- --- --- --- --- --- SPAC3G9.11c // |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.28455719250306 -1.40004346278254 -2.80377272416132 -2.75711218277261 -3.23984183846142 Max fold change at or above threshold 2 3.28455719250306 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775824_at YGR275W.S1 Regulator of Ty1 Transposition; regulator of Ty1 transposition 3.28447618493592 207.223068237305 511.989883422852 RTT102 --- 5634 // nucleus // inferred from direct assay /// 16514 // SWI/SNF complex // inferred from physical interaction /// 16586 // RSC complex // inferred from physical interaction --- 477.282562255859 145.314666748047 269.131469726563 546.697204589844 0.000732421991415322 0.0107421996071935 0.00292969006113708 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR275W /GEN=RTT102 /DB_XREF=GI:37362657 /SEG=NC_001139:+1043281,1043754 /DEF=Regulator of Ty1 Transposition /NOTE=Rtt102p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003507 // RTT102 SGDID:S0003507, Chr VII from 1043282-1043755, Verified ORF // sgd // 11 // --- /// GENSCAN00000019552 // cdna:Genscan chromosome:SGD1:VII:1043195:1043755:1 // ensembl // 11 // --- /// GENEFINDER00000021658 // cdna:GeneFinder chromosome:SGD1:VII:1043195:1043755:1 // ensembl // 11 // --- /// YGR275W // cdna:known chromosome:SGD1:VII:1043282:1043755:1 gene:YGR275W // ensembl // 11 // --- --- No cerevisiae_gene -1.65124409789006 -3.28447618493592 1.48888075426506 -1.77341788658449 1.14543720601461 Max fold change at or above threshold 4 3.28447618493592 Max fold change at or above threshold 0.635214281870564 -1.15674494072029 -0.488383135222013 1.00991379407174 359.606475830078 185.254157194406 0.515158012009613 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1778284_at SPBC2F12.10.S1 --- 3.28447597899552 --- --- --- --- 9.02929878234863 10.3258590698242 7.83540534973145 6.6168851852417 0.274170011281967 0.129638999700546 0.111571997404099 0.14453125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2F12.10 /DEF=mitochondrial ribosomal protein (predicted) --- --- --- --- --- --- SPBC2F12.10 // |||mitochondrial ribosomal protein subunit L35|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.00312744082994 1.14359479276621 -3.28447597899552 -1.15237162333383 -1.36458447284042 Max fold change at or above threshold 4 3.28447597899552 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778008_at YPR078C.S1 Hypothetical protein 3.28421227144878 140.196357727051 431.308944702148 --- 6259 // DNA metabolism // inferred from genetic interaction /// 7126 // meiosis // inferred from expression pattern --- --- 395.977447509766 120.56999206543 159.822723388672 466.640441894531 0.000244141003349796 0.00805663969367743 0.00805663969367743 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR078C /GEN=OPY2 /DB_XREF=GI:6325335 /SEG=NC_001148:-697142,698260 /DEF=Hypothetical ORF /NOTE=Ypr078cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA metabolism [goid GO:0006259] [evidence IGI] [pmid 10051619]; go_process: meiosis [goid GO:0007126] [evidence IEP] [pmid 10051619] --- --- --- --- --- --- S0006282 // YPR078C SGDID:S0006282, Chr XVI from 698262-697144, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017243 // cdna:Genscan chromosome:SGD1:XVI:697144:698262:-1 // ensembl // 11 // --- /// YPR078C // cdna:known chromosome:SGD1:XVI:697144:698262:-1 gene:YPR078C // ensembl // 11 // --- YPR077C // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene -1.28682007482275 -3.28421227144878 -1.22430871091942 -2.47760417989368 1.1784520679881 Max fold change at or above threshold 4 3.28421227144878 Max fold change at or above threshold 0.64352459189483 -0.964384665610257 -0.735215742150386 1.05607581586581 285.7526512146 171.28295900956 0.599409868225254 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1775672_at SPCC622.16c.S1 --- 3.28248247211268 --- --- --- --- 1.32959508895874 0.5999596118927 1.18230020999908 0.973060369491577 0.805419981479645 0.976073980331421 0.870360970497131 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC622.16c /GEN=epe1 /DEF=transcription factor (predicted) --- --- --- --- --- --- SPCC622.16c // |epe1||transcription factor |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- AB084879 // gb // 7 // Negative Strand Matching Probes /// SPNCRNA.67 // sanger // 7 // Negative Strand Matching Probes No No 2.11865868970432 -2.2161409911648 -3.28248247211268 -1.12458331455407 -1.36640554958934 Max fold change at or above threshold 0 3.28248247211268 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776236_at SPAC24H6.09.S1 --- 3.28200466134961 --- --- --- --- 10.9708375930786 7.07477855682373 3.34272456169128 4.01038265228271 0.014160200022161 0.0676269978284836 0.194580003619194 0.030273400247097 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24H6.09 /GEN=gef1 /DEF=RhoGEF --- --- --- --- --- --- SPAC24H6.09 // |gef1||RhoGEF|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.67814548475946 -1.55069695891712 -3.25076138345086 -3.28200466134961 -2.73560867984356 Max fold change at or above threshold 4 3.28200466134961 Max fold change at or above threshold PAAAAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1771996_at SPCC1020.02.S1 --- 3.28157853673941 --- --- --- --- 2.57305431365967 8.44367980957031 7.18780755996704 2.04828596115112 0.5 0.0375977009534836 0.194580003619194 0.533936023712158 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1020.02 /GEN=spc7 /DEF=localization spindle pole body --- --- --- --- --- --- SPCC1020.02 // |spc7||kinetochore protein Spc7p|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.6974745072476 3.28157853673941 -1.10316774393832 2.79349235723819 -1.25619877422468 Max fold change at or above threshold 3 3.28157853673941 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1773609_at SPAC57A7.13.S1 --- 3.28091148329712 --- --- --- --- 0.345617800951004 1.13394141197205 0.288537532091141 0.467510908842087 0.904784977436066 0.753906011581421 0.850341975688934 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC57A7.13 /DEF=RNA-binding protein --- --- --- --- --- --- SPAC57A7.13 // |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.04912178524077 3.28091148329712 -1.78927393057524 -1.19782614915356 1.35268179924669 Max fold change at or above threshold 0 3.28091148329712 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769902_at SPCC1450.01c.S1 --- 3.2797993468868 --- --- --- --- 7.02569055557251 4.22035264968872 6.51724290847778 5.28522777557373 0.219482004642487 0.466064006090164 0.334473013877869 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1450.01c /DEF=pseudogene --- --- --- --- --- --- SPCC1450.01c // ||SPCC191.12c|pseudogene|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.2797993468868 -1.66471646773184 -1.56302167011879 -1.07801575823318 -1.32930705239281 Max fold change at or above threshold 4 3.2797993468868 Max fold change at or above threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1777640_at YLL054C.S1 Hypothetical protein 3.27813821265352 75.4705410003662 179.803909301758 --- --- 5886 // plasma membrane // inferred from sequence similarity 16563 // transcriptional activator activity // inferred from sequence similarity 174.723388671875 53.2995796203613 97.6415023803711 184.884429931641 0.00415039015933871 0.018554700538516 0.00585938012227416 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL054C /GEN=JLP1 /DB_XREF=GI:6322974 /SEG=NC_001144:-32894,35203 /DEF=Hypothetical ORF /NOTE=Yll054cp; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 11113969]; go_function: transcriptional activator activity [goid GO:0016563] [evidence ISS] [pmid 11113969]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003977 // YLL054C SGDID:S0003977, Chr XII from 35203-32894, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017662 // cdna:Genscan chromosome:SGD1:XII:32894:35203:-1 // ensembl // 11 // --- /// YLL054C // cdna:known chromosome:SGD1:XII:32894:35203:-1 gene:YLL054C // ensembl // 11 // --- --- No cerevisiae_gene -1.29605604428652 -3.27813821265352 1.27329697331301 -1.78943773305766 1.05815501483232 Max fold change at or above threshold 4 3.27813821265352 Max fold change at or above threshold 0.746986168491957 -1.17931020192687 -0.475859325717231 0.908183359152139 127.637225151062 63.0348532635782 0.493859477037163 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1779452_at SPBC2G2.04c.S1 --- 3.27799688928399 --- --- --- --- 9.65463924407959 3.60165452957153 6.45207118988037 5.21644067764282 0.0805663987994194 0.5 0.219482004642487 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G2.04c /GEN=mmf1 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC2G2.04c // |mmf1|pmf1|conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.27799688928399 -2.68061224773497 -1.33085027528028 -1.49636278955233 -1.8508097457062 Max fold change at or above threshold 4 3.27799688928399 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769500_at YGR113W.S1 Component of the DASH complex, localized to intranuclear spindles and spindle pole bodies; interacts with Duo1p and Mps1p; key Ipl1p target for regulating kinetochore-microtubule attachments 3.27758870319711 286.591751098633 964.186218261719 DAM1 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from genetic interaction /// 31110 // regulation of microtubule polymerization or depolymerization // inferred from physical interaction /// 31110 // regulation of microtubule polymerization or depolymerization // inferred from direct assay 778 // condensed nuclear chromosome kinetochore // inferred from physical interaction /// 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 5819 // spindle // inferred from physical interaction /// 5828 // kinetochore microtubule // inferred from direct assay /// 42729 // DASH complex // inferred from direct assay /// 42729 // DASH complex // inferred from physical interaction /// 51233 // spindle midzone // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from physical interaction 938.303588867188 286.278625488281 286.904876708984 990.06884765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR113W /GEN=DAM1 /DB_XREF=GI:14318436 /SEG=NC_001139:+718895,719926 /DEF=Duo1 And Mps1 interacting. Localized to intranuclear spindles and spindle pole bodies. Key Ipl1p target for regulating kinetochore-microtubule attachments. /NOTE=Dam1p; go_component: DASH complex [goid GO:0042729] [evidence IDA,IPI] [pmid 11799062]; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IPI] [pmid 11756468]; go_component: kinetochore microtubule [goid GO:0005828] [evidence IDA] [pmid 11724818]; go_component: spindle [goid GO:0005819] [evidence IPI] [pmid 11756468]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 11756468]; go_process: mitotic spindle assembly (sensu Fungi) [goid GO:0030472] [evidence IGI] [pmid 11756468] --- --- --- --- --- --- S0003345 // DAM1 SGDID:S0003345, Chr VII from 718897-719928, Verified ORF // sgd // 11 // --- /// GENSCAN00000019429 // cdna:Genscan chromosome:SGD1:VII:718897:719928:1 // ensembl // 11 // --- /// YGR113W // cdna:known chromosome:SGD1:VII:718897:719928:1 gene:YGR113W // ensembl // 11 // --- --- No cerevisiae_gene -1.68368801783006 -3.27758870319711 -1.10713012041251 -3.27043443677305 1.05516898731205 Max fold change at or above threshold 4 3.27758870319711 Max fold change at or above threshold 0.798700160771827 -0.865563622732314 -0.863965145243676 0.930828607204164 625.388984680176 391.779818705214 0.626457817938016 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779019_at YHL024W.S1 Putative RNA-binding protein required for the expression of early and middle sporulation genes 3.27725081066649 235.200881958008 96.3073272705078 RIM4 6279 // premeiotic DNA synthesis // inferred from mutant phenotype /// 7126 // meiosis // inferred from expression pattern /// 7126 // meiosis // inferred from mutant phenotype /// 7131 // meiotic recombination // inferred from mutant phenotype /// 30435 // sporulation // inferred from genetic interaction /// 30435 // sporulation // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 3723 // RNA binding // inferred from sequence similarity /// 3723 // RNA binding // inferred from mutant phenotype 85.0401611328125 191.703826904297 278.697937011719 107.574493408203 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL024W /GEN=RIM4 /DB_XREF=GI:6321763 /SEG=NC_001140:+56646,58787 /DEF=Regulator of IMe2 expression /NOTE=Rim4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: RNA binding [goid GO:0003723] [evidence IMP,ISS] [pmid 10806425]; go_process: meiosis [goid GO:0007126] [evidence IEP] [pmid 10806425]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 11713679]; go_process: meiotic recombination [goid GO:0007131] [evidence IMP] [pmid 11713679]; go_process: premeiotic DNA synthesis [goid GO:0006279] [evidence IMP] [pmid 11713679]; go_process: sporulation [goid GO:0030435] [evidence IGI,IMP] [pmid 10806425] --- --- --- --- --- --- S0001016 // RIM4 SGDID:S0001016, Chr VIII from 56646-58787, Verified ORF // sgd // 11 // --- /// GENSCAN00000016533 // cdna:Genscan chromosome:SGD1:VIII:56646:58787:1 // ensembl // 11 // --- /// GENEFINDER00000020175 // cdna:GeneFinder chromosome:SGD1:VIII:56646:58787:1 // ensembl // 11 // --- /// YHL024W // cdna:known chromosome:SGD1:VIII:56646:58787:1 gene:YHL024W // ensembl // 11 // --- --- No cerevisiae_gene 1.19687048284 2.25427403182952 1.29573196114543 3.27725081066649 1.26498459051832 Max fold change at or above threshold 4 3.27725081066649 Max fold change at or above threshold -0.915289102003105 0.294267594762482 1.28077324032155 -0.659751733080928 165.754104614258 88.1840975761683 0.532017579784163 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769394_at SPBC651.07.S1 --- 3.27719248981444 --- --- --- --- 0.269998401403427 0.436874032020569 0.884836733341217 0.428986191749573 0.998778998851776 0.998778998851776 0.985840022563934 0.995850026607513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC651.07 /GEN=csa1 /DEF=COP9signalosome associated (pers. comm. Tony Carr) --- --- --- --- --- --- SPBC651.07 // |csa1||COP9/signalosome associated |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.12549258287551 1.61806155054896 2.08613805201816 3.27719248981444 1.58884715435255 Max fold change at or above threshold 0 3.27719248981444 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776319_at YPL029W.S1 ATP-dependent RNA helicase, component of the mitochondrial degradosome along with the RNase Msu1p; the degradosome associates with the ribosome and mediates turnover of aberrant or unprocessed RNAs 3.27651097807736 158.978248596191 465.905563354492 SUV3 6401 // RNA catabolism // inferred from direct assay /// 6401 // RNA catabolism // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5759 // mitochondrial matrix // inferred from direct assay 4004 // ATP-dependent RNA helicase activity // inferred from direct assay 429.627502441406 131.123474121094 186.833023071289 502.183624267578 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL029W /GEN=SUV3 /DB_XREF=GI:6325228 /SEG=NC_001148:+495502,497715 /DEF=putative ATP-dependent helicase /NOTE=Suv3p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 12426313]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 8565066]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence IDA] [pmid 12426313]; go_process: RNA catabolism [goid GO:0006401] [evidence IDA,IMP] [pmid 12426313] --- --- --- --- --- --- S0005950 // SUV3 SGDID:S0005950, Chr XVI from 495504-497717, Verified ORF // sgd // 11 // --- /// GENSCAN00000017165 // cdna:Genscan chromosome:SGD1:XVI:495504:497717:1 // ensembl // 11 // --- /// GENEFINDER00000021024 // cdna:GeneFinder chromosome:SGD1:XVI:495504:497717:1 // ensembl // 11 // --- /// YPL029W // cdna:known chromosome:SGD1:XVI:495504:497717:1 gene:YPL029W // ensembl // 11 // --- --- No cerevisiae_gene -1.6090588491451 -3.27651097807736 1.05987753687766 -2.29952657928933 1.16888146455677 Max fold change at or above threshold 4 3.27651097807736 Max fold change at or above threshold 0.647087523163139 -1.00122283378373 -0.693600095718333 1.04773540633892 312.441905975342 181.096980348546 0.579618088627454 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772331_at YER016W.S1 Microtubule-binding protein that together with Kar9p makes up the cortical microtubule capture site and delays the exit from mitosis when the spindle is oriented abnormally 3.27575969799504 81.5208873748779 202.091102600098 BIM1 7019 // microtubule depolymerization // inferred from mutant phenotype /// 7020 // microtubule nucleation // inferred from physical interaction /// 7026 // negative regulation of microtubule depolymerization // inferred from mutant phenotype /// 7064 // mitotic sister chromatid cohesion // inferred from genetic interaction /// 7064 // mitotic sister chromatid cohesion // inferred from mutant phenotype /// 7094 // mitotic spindle checkpoint // traceable author statement /// 30473 // nuclear migration, microtubule-mediated // inferred from mutant phenotype 776 // kinetochore // traceable author statement /// 5816 // spindle pole body // inferred from direct assay /// 5881 // cytoplasmic microtubule // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from physical interaction 181.015701293945 55.2591514587402 107.782623291016 223.16650390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER016W /GEN=BIM1 /DB_XREF=GI:6320853 /SEG=NC_001137:+188276,189310 /DEF=Bim1p and Kar9p together make up the cortical microtubule-capture site. delays the exit from mitosis when the spindle is oriented abnormally. /NOTE=Bim1p; go_component: cytoplasmic microtubule [goid GO:0005881] [evidence IDA] [pmid 10352017]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 9585415]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9585415]; go_process: microtubule depolymerization [goid GO:0007019] [evidence IMP] [pmid 10352017]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752]; go_process: microtubule stabilization [goid GO:0007026] [evidence IMP] [pmid 10352017]; go_process: mitotic spindle checkpoint [goid GO:0007094] [evidence TAS] [pmid 10935617]; go_process: nuclear migration (sensu Saccharomyces) [goid GO:0000065] [evidence IMP] [pmid 10352017] --- --- --- --- --- --- S0000818 // BIM1 SGDID:S0000818, Chr V from 188276-189310, Verified ORF // sgd // 11 // --- /// GENSCAN00000016818 // cdna:Genscan chromosome:SGD1:V:188276:189310:1 // ensembl // 11 // --- /// GENEFINDER00000019585 // cdna:GeneFinder chromosome:SGD1:V:188276:189310:1 // ensembl // 11 // --- /// YER016W // cdna:known chromosome:SGD1:V:188276:189310:1 gene:YER016W // ensembl // 11 // --- --- No cerevisiae_gene 1.03589263970591 -3.27575969799504 1.07027664482433 -1.67945161999999 1.23285716272677 Max fold change at or above threshold 4 3.27575969799504 Max fold change at or above threshold 0.523885666432521 -1.15636292823295 -0.454590417387344 1.08706767918777 141.805994987488 74.8440142931605 0.527791609231784 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776820_at YHR080C.S1 Hypothetical protein 3.27445074345393 1091.92999267578 1310.20806884766 --- --- 5739 // mitochondrion // inferred from direct assay --- 1240.87463378906 1045.4921875 1138.36779785156 1379.54150390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR080C /GEN=SAE3 /DB_XREF=GI:6321872 /SEG=NC_001140:-262802,266839 /DEF=Hypothetical ORF /NOTE=Yhr080cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001122 // YHR080C SGDID:S0001122, Chr VIII from 266839-262802, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016624 // cdna:Genscan chromosome:SGD1:VIII:262802:266839:-1 // ensembl // 11 // --- /// GENEFINDER00000020234 // cdna:GeneFinder chromosome:SGD1:VIII:262802:266839:-1 // ensembl // 11 // --- /// YHR080C // cdna:known chromosome:SGD1:VIII:262802:266839:-1 gene:YHR080C // ensembl // 11 // --- --- No cerevisiae_gene -3.27445074345393 -1.18688082859449 1.1996418187658 -1.09004720278539 1.11174929871341 Max fold change at or above threshold 4 3.27445074345393 Max fold change at or above threshold 0.277850646317028 -1.08595582442345 -0.437666478183836 1.24577165629025 1201.06903076172 143.262589290239 0.119279230103354 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773540_at YDR300C.S1 Gamma-glutamyl kinase, catalyzes the first step in proline biosynthesis 3.27442523066709 325.237930297852 966.999298095703 PRO1 6561 // proline biosynthesis // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 4349 // glutamate 5-kinase activity // inferred from direct assay /// 4349 // glutamate 5-kinase activity // inferred from mutant phenotype /// 4349 // glutamate 5-kinase activity // inferred from sequence similarity /// 4349 // glutamate 5-kinase activity // inferred from genetic interaction 906.689025878906 276.900207519531 373.575653076172 1027.3095703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR300C /GEN=PRO1 /DB_XREF=GI:6320506 /SEG=NC_001136:-1061497,1062783 /DEF=Gamma-glutamyl kinase, catalyzes the first step in proline biosythesis /NOTE=Pro1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: glutamate 5-kinase activity [goid GO:0004349] [evidence IDA] [pmid 12513997]; go_function: glutamate 5-kinase activity [goid GO:0004349] [evidence ISS] [pmid 1350780]; go_function: glutamate 5-kinase activity [goid GO:0004349] [evidence IGI,IMP] [pmid 2824433]; go_process: proline biosynthesis [goid GO:0006561] [evidence IDA] [pmid 12513997] --- --- --- --- --- --- S0002708 // PRO1 SGDID:S0002708, Chr IV from 1062785-1061499, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023444 // cdna:GeneFinder chromosome:SGD1:IV:1061499:1062785:-1 // ensembl // 11 // --- /// GENSCAN00000025331 // cdna:Genscan chromosome:SGD1:IV:1061499:1062785:-1 // ensembl // 11 // --- /// YDR300C // cdna:known chromosome:SGD1:IV:1061499:1062785:-1 gene:YDR300C // ensembl // 11 // --- --- No cerevisiae_gene 1.43957550736635 -3.27442523066709 1.02497591246374 -2.42705598829277 1.13303408444441 Max fold change at or above threshold 4 3.27442523066709 Max fold change at or above threshold 0.693270136327115 -0.982337532029044 -0.725124140501316 1.01419153620325 646.118614196777 375.856968342252 0.581715121780694 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772135_at SPBC4F6.09.S1 --- 3.27277918466131 --- --- --- --- 2.25295305252075 7.32473278045654 7.37341785430908 3.68265175819397 0.665526986122131 0.21337890625 0.129638999700546 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4F6.09 /GEN=str1 /DEF=membrane transporter --- --- --- --- --- --- SPBC4F6.09 // |str1||siderophore-iron transporter Str1 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.86471617227027 3.25116973576575 2.55473783463163 3.27277918466131 1.63458876964772 Max fold change at or above threshold 3 3.27277918466131 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-ThrX-5_at AFFX-ThrX-5 --- 3.27271643888401 --- --- --- --- 0.902280151844025 2.9529070854187 0.644162058830261 0.466299653053284 0.916408002376556 0.724854052066803 0.852061212062836 0.94155615568161 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=thrC /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 288-932 of gb:X04603.1 /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase (EC 2.7.1.39 and EC 4.2.99.2, respectively). --- --- --- --- --- --- X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-ThrX-5 // --- // unknown // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-ThrX-5 // --- // gb // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-ThrX-5 // B. subtilis /GEN=thrC /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 288-932 of gb:X04603.1 /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase (EC 2.7.1.39 and EC 4.2.99.2, respectively). // affx // --- // --- /// X04603 // Bacillus subtilis /REF=X04603 /DEF=B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 /LEN=2073 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-ThrX-5 // --- // unknown // --- // --- /// AFFX-ThrX-5 // --- // unknown // --- // --- /// AFFX-ThrX-5 // --- // unknown // --- // --- /// X04603 // X04603 B subtilis thrC, thrB genes corresponding to nucleotides 248-2229 of X04603 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-ThrX-5 // --- // unknown // --- // --- /// AFFX-ThrX-5 // --- // affx // --- // --- /// AFFX-ThrX-5 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-ThrX-5 // --- // affx // --- // --- /// AFFX-ThrX-5 // --- // affx // --- // --- /// AFFX-ThrX-5 // --- // affx // --- // --- /// AFFX-ThrX-5 // --- // affx // --- // --- /// AFFX-ThrX-5 // --- // affx // --- // --- /// AFFX-ThrX-5 // --- // affx // --- // --- /// AFFX-ThrX-5 // --- // affx // --- // --- /// AFFX-ThrX-5 // --- // affx // --- // --- /// AFFX-ThrX-5 // --- // affx // --- // --- /// AFFX-ThrX-5 // --- // affx // --- // --- /// AFFX-ThrX-5 // --- // affx // --- // --- 50812173 // gb // 20 // Negative Strand Matching Probes AFFX_control No -2.71451030053416 3.27271643888401 -1.10537652137834 -1.40070365752755 -1.93497924764898 Max fold change at or above threshold 1 3.27271643888401 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774876_at YMR109W.S1 One of two type I myosins; contains proline-rich tail homology 2 (TH2) and SH3 domains; MYO5 deletion has little effect on growth, but myo3 myo5 double deletion causes severe defects in growth and actin cytoskeleton organization 3.27186541296934 584.617965698242 1586.38653564453 MYO5 6887 // exocytosis // inferred from mutant phenotype /// 6897 // endocytosis // inferred from mutant phenotype /// 6970 // response to osmotic stress // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 7121 // bipolar bud site selection // inferred from mutant phenotype /// 9651 // response to salt stress // inferred from genetic interaction /// 9651 // response to salt stress // inferred from physical interaction 30479 // actin cortical patch // inferred from direct assay 146 // microfilament motor activity // traceable author statement 1488.86401367188 455.050506591797 714.185424804688 1683.90905761719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR109W /GEN=MYO5 /DB_XREF=GI:6323756 /SEG=NC_001145:+486586,490245 /DEF=One of two class-I myosins; contains proline-rich tail homology 2 (TH2) and SH3 domains; MYO5 deletion has little effect on growth; double deletion of myo3 myo5 has severe defects in growth and actin cytoskeleton organization /NOTE=Myo5p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10652251]; go_function: microfilament motor activity [goid GO:0000146] [evidence TAS] [pmid 9153752]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 10652251]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 10652251]; go_process: exocytosis [goid GO:0006887] [evidence IMP] [pmid 10652251]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251]; go_process: response to osmotic stress [goid GO:0006970] [evidence IMP] [pmid 10652251]; go_process: response to salt stress [goid GO:0009651] [evidence IGI,IPI] [pmid 12391157] --- --- --- --- --- --- S0004715 // MYO5 SGDID:S0004715, Chr XIII from 486586-490245, Verified ORF // sgd // 11 // --- /// GENSCAN00000018803 // cdna:Genscan chromosome:SGD1:XIII:486586:490245:1 // ensembl // 11 // --- /// GENEFINDER00000021914 // cdna:GeneFinder chromosome:SGD1:XIII:486586:490245:1 // ensembl // 11 // --- /// YMR109W // cdna:known chromosome:SGD1:XIII:486586:490245:1 gene:YMR109W // ensembl // 11 // --- --- No cerevisiae_gene -2.32552411539023 -3.27186541296934 -1.05822340805441 -2.08470232234023 1.13100259134096 Max fold change at or above threshold 4 3.27186541296934 Max fold change at or above threshold 0.679822014286971 -1.06255727211903 -0.625813787161175 1.00854904499323 1085.50225067139 593.33436476539 0.546598926348067 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775705_at YOL024W.S1 Hypothetical protein 3.27118454871619 180.545402526855 489.80842590332 --- --- --- --- 455.206573486328 221.934310913086 139.156494140625 524.410278320313 0.000732421991415322 0.00805663969367743 0.030273400247097 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL024W /GEN=LAG2 /DB_XREF=GI:6324549 /SEG=NC_001147:+277086,277604 /DEF=Hypothetical ORF /NOTE=Yol024wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005384 // YOL024W SGDID:S0005384, Chr XV from 277086-277604, Uncharacterized ORF // sgd // 11 // --- /// YOL024W // cdna:known chromosome:SGD1:XV:277086:277604:1 gene:YOL024W // ensembl // 11 // --- --- No cerevisiae_gene -1.55217723209761 -2.05108697079559 -2.01579994182155 -3.27118454871619 1.15202703314227 Max fold change at or above threshold 4 3.27118454871619 Max fold change at or above threshold 0.652668446462861 -0.615763423967637 -1.0658727502999 1.02896772780468 335.176914215088 183.906024447392 0.548683446406385 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1771132_at SPAC25B8.07c.S1 --- 3.27057405334038 0.919451385736465 1.77058607339859 --- --- --- --- 1.07976806163788 1.06326937675476 0.77563339471817 2.4614040851593 0.567627012729645 0.601073980331421 0.398925989866257 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25B8.07c /DEF=similar to S. cerevisiae YML030W --- --- --- --- --- --- SPAC25B8.07c // |||mitochondrial protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No cerevisiae_gene 3.25103439032493 -1.01551693789346 -3.27057405334038 -1.39211136213419 2.2795674113806 Max fold change at or above threshold 0 3.27057405334038 Max fold change at or above threshold -0.35028416517164 -0.372071963505274 -0.751917679361245 1.47427380803816 1.34501872956753 0.757244244254306 0.562999033104756 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779161_at SPCC622.10c.S1 --- 3.26993617359838 --- --- --- --- 4.76222562789917 8.37389850616455 7.67571878433228 3.2123908996582 0.366210997104645 0.149657994508743 0.219482004642487 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC622.10c /DEF=sequence orphan --- --- --- --- --- --- SPCC622.10c // |||exocyst complex subunit Sec5p |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.31314040275897 1.75840020202038 -3.26993617359838 1.61179233914593 -1.4824552106675 Max fold change at or above threshold 4 3.26993617359838 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777331_at SPAC25G10.03.S1 --- 3.26893676954632 --- --- --- --- 6.53824043273926 21.3730945587158 17.7808303833008 9.32687950134277 0.129638999700546 0.0239257998764515 0.00415039015933871 0.0952147990465164 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25G10.03 /GEN=zip1 /DEF=transcription factor --- --- --- --- --- --- SPAC25G10.03 // |zip1||transcription factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.10269413557789 3.26893676954632 1.36709203625171 2.71951308096073 1.42651216291157 Max fold change at or above threshold 4 3.26893676954632 Max fold change at or above threshold APPPPA No 3 0 APPA 2 2 0 No No 1 < x = 2
1773613_at YJL212C.S1 Plasma membrane transporter that transports tetra- and pentapeptides and glutathione; member of the OPT family 3.26883105588301 833.872100830078 351.691818237305 OPT1 6790 // sulfur metabolism // inferred from expression pattern 5783 // endoplasmic reticulum // inferred from direct assay /// 5887 // integral to plasma membrane // inferred from mutant phenotype /// 5887 // integral to plasma membrane // inferred from sequence similarity 15198 // oligopeptide transporter activity // inferred from mutant phenotype 363.880645751953 721.015380859375 946.728820800781 339.502990722656 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL212C /GEN=OPT1 /DB_XREF=GI:6322249 /SEG=NC_001142:-33850,36249 /DEF=Plasma membrane transporter that transports tetra- and pentapeptides and glutathione; member of the OPT family /NOTE=Opt1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_component: integral to plasma membrane [goid GO:0005887] [evidence IMP,ISS] [pmid 10788431]; go_function: oligopeptide transporter activity [goid GO:0015198] [evidence IMP] [pmid 10652283]; go_process: sulfur metabolism [goid GO:0006790] [evidence IEP] [pmid 11862495] --- --- --- --- --- S0003748 // span:107-129,136-158,178-200,277-299,352-374,422-444,483-500,507-529,591-610,661-680,707-724,737-759 // numtm:12 S0003748 // OPT1 SGDID:S0003748, Chr X from 36249-33850, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000023979 // cdna:Genscan chromosome:SGD1:X:33850:36249:-1 // ensembl // 11 // --- /// GENEFINDER00000024382 // cdna:GeneFinder chromosome:SGD1:X:33850:36249:-1 // ensembl // 11 // --- /// YJL212C // cdna:known chromosome:SGD1:X:33850:36249:-1 gene:YJL212C // ensembl // 11 // --- --- No cerevisiae_gene 3.26883105588301 1.98146119964531 1.32264515511663 2.60175646012824 -1.07180394781621 Max fold change at or above threshold 4 3.26883105588301 Max fold change at or above threshold -0.780141556542072 0.437045201973478 1.20632184551541 -0.863225490946815 592.781959533691 293.409973949252 0.494971159682493 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770074_at YBR141C.S1 Hypothetical protein 3.26743677555253 62.2741069793701 150.590454101563 --- --- 5730 // nucleolus // inferred from direct assay --- 143.7958984375 44.0087776184082 80.539436340332 157.385009765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR141C /GEN=IRA1 /DB_XREF=GI:6319617 /SEG=NC_001134:-526981,527994 /DEF=Hypothetical ORF /NOTE=Ybr141cp; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000345 // YBR141C SGDID:S0000345, Chr II from 528032-527019, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021253 // cdna:Genscan chromosome:SGD1:II:527019:528032:-1 // ensembl // 11 // --- /// YBR141C // cdna:known chromosome:SGD1:II:527019:528032:-1 gene:YBR141C // ensembl // 11 // --- YBR141W-A // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene 1.36636580456648 -3.26743677555253 1.20331462610444 -1.78540979390355 1.09450277425007 Max fold change at or above threshold 4 3.26743677555253 Max fold change at or above threshold 0.699502166552763 -1.16866026352494 -0.484752324202657 0.953910421174829 106.432280540466 53.4145849485591 0.501864515890463 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778091_at YDR302W.S1 ER membrane protein involved in a late step of glycosylphosphatidylinositol (GPI) anchor assembly; involved in the addition of phosphoethanolamine to the multiply mannosylated GPI intermediate; human PIG-Fp is a functional homolog 3.26733774309482 145.482757568359 459.389846801758 GPI11 6506 // GPI anchor biosynthesis // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from sequence similarity /// 5789 // endoplasmic reticulum membrane // inferred from curator 234 // phosphoethanolamine N-methyltransferase activity // inferred from mutant phenotype 459.887359619141 150.212585449219 140.7529296875 458.892333984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR302W /GEN=GPI11 /DB_XREF=GI:6320508 /SEG=NC_001136:+1067723,1068382 /DEF=ER membrane protein involved in a late step of glycosylphosphatidylinositol (GPI) anchor assembly; involved in the addition of phosphoethanolamine to the multiply mannosylated GPI intermediate; human PIG-Fp is a functional homolog /NOTE=Gpi11p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence ISS] [pmid 10793139]; go_function: phosphoethanolamine N-methyltransferase activity [goid GO:0000234] [evidence IMP] [pmid 10793139]; go_process: GPI anchor biosynthesis [goid GO:0006506] [evidence IMP] [pmid 10793139] --- --- --- --- --- S0002710 // span:105-127,137-159,171-188,198-217 // numtm:4 S0002710 // GPI11 SGDID:S0002710, Chr IV from 1067725-1068384, Verified ORF // sgd // 11 // --- /// YDR302W // cdna:known chromosome:SGD1:IV:1067725:1068384:1 gene:YDR302W // ensembl // 11 // --- --- No cerevisiae_gene -1.39129999249398 -3.06157675299858 1.41975205826781 -3.26733774309482 -1.00216832045575 Max fold change at or above threshold 4 3.26733774309482 Max fold change at or above threshold 0.868571186256191 -0.839734812685703 -0.891918548764904 0.863082175194417 302.436302185059 181.275939065794 0.599385516077607 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776753_at SPAC959.08.S1 --- 3.26712168390654 --- --- --- --- 0.863714993000031 0.741469621658325 1.72495591640472 2.82186198234558 0.725830018520355 0.665526986122131 0.633789002895355 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC959.08 /GEN=rpl2102 /DEF=60S ribosomal protein L21 --- --- --- --- --- --- AB010901 // Schizosaccharomyces pombe mRNA for ribosomal protein L21 homolog, partial cds. // gb // 10 // --- /// SPAC959.08 // |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.59978242646525 -1.16486902196788 1.51129207887551 1.9971355486296 3.26712168390654 Max fold change at or above threshold 1 3.26712168390654 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780022_at YLR053C.S1 Hypothetical protein 3.26657048811538 365.175918579102 114.764675140381 --- --- --- --- 115.688049316406 377.903167724609 352.448669433594 113.841300964355 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR053C /GEN=IES3 /DB_XREF=GI:6323082 /SEG=NC_001144:-248101,248427 /DEF=Hypothetical ORF /NOTE=Ylr053cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004043 // YLR053C SGDID:S0004043, Chr XII from 248427-248101, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YLR053C // cdna:known chromosome:SGD1:XII:248101:248427:-1 gene:YLR053C // ensembl // 11 // --- GENEFINDER00000024630 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene -1.14594985287053 3.26657048811538 1.34418388832525 3.04654345471457 -1.01622212972275 Max fold change at or above threshold 4 3.26657048811538 Max fold change at or above threshold -0.857414919463416 0.951589657426509 0.775980774954676 -0.870155512917768 239.970296859741 144.949947478302 0.604032871464185 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777284_at YBL029W.S1 Hypothetical protein 3.26269168887414 244.885757446289 99.7419471740723 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 96.5406265258789 193.733520507813 296.037994384766 102.943267822266 0.00122069998178631 0.00292969006113708 0.00195312988944352 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL029W /GEN=PET9 /DB_XREF=GI:6319442 /SEG=NC_001134:+166099,167229 /DEF=Hypothetical ORF /NOTE=Ybl029wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000125 // YBL029W SGDID:S0000125, Chr II from 166137-167267, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021116 // cdna:Genscan chromosome:SGD1:II:166458:167267:1 // ensembl // 11 // --- /// YBL029W // cdna:known chromosome:SGD1:II:166137:167267:1 gene:YBL029W // ensembl // 11 // --- --- No cerevisiae_gene 3.26269168887414 2.00675640380146 1.5890724450328 3.06646025655747 1.0663206934406 Max fold change at or above threshold 4 3.26269168887414 Max fold change at or above threshold -0.8089669474541 0.228679766737709 1.32089851665244 -0.740611335936046 172.313852310181 93.6666522937281 0.543581674009119 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773831_at YMR114C.S1 Hypothetical protein 3.26154121197342 525.456497192383 460.93537902832 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 493.278198242188 470.022552490234 580.890441894531 428.592559814453 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR114C /GEN=FOL3 /DB_XREF=GI:6323761 /SEG=NC_001145:-496342,497448 /DEF=Hypothetical ORF /NOTE=Ymr114cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004720 // YMR114C SGDID:S0004720, Chr XIII from 497448-496342, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018808 // cdna:Genscan chromosome:SGD1:XIII:496342:497448:-1 // ensembl // 11 // --- /// GENEFINDER00000021785 // cdna:GeneFinder chromosome:SGD1:XIII:496342:497448:-1 // ensembl // 11 // --- /// YMR114C // cdna:known chromosome:SGD1:XIII:496342:497448:-1 gene:YMR114C // ensembl // 11 // --- --- No cerevisiae_gene -3.26154121197342 -1.04947772320443 1.21637814020765 1.17761223578207 -1.15092571475281 Max fold change at or above threshold 4 3.26154121197342 Max fold change at or above threshold 0.00127944850784815 -0.360431633061105 1.36397303905286 -1.00482085449961 493.195938110352 64.2934290292676 0.130360824291465 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773157_at YFL026W.S1 Receptor for alpha-factor pheromone; seven transmembrane-domain GPCR that interacts with both pheromone and a heterotrimeric G protein to initiate the signaling response that leads to mating between haploid a and alpha cells 3.26088721561648 75.0680923461914 23.1733770370483 STE2 749 // response to pheromone during conjugation with cellular fusion // traceable author statement /// 30031 // cell projection biogenesis // inferred from mutant phenotype 5887 // integral to plasma membrane // inferred from direct assay 4934 // mating-type alpha-factor pheromone receptor activity // inferred from sequence similarity /// 4934 // mating-type alpha-factor pheromone receptor activity // inferred from direct assay /// 4934 // mating-type alpha-factor pheromone receptor activity // inferred from genetic interaction /// 4934 // mating-type alpha-factor pheromone receptor activity // inferred from mutant phenotype 24.2812042236328 70.9579162597656 79.1782684326172 22.0655498504639 0.0676269978284836 0.0107421996071935 0.00292969006113708 0.014160200022161 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL026W /GEN=STE2 /DB_XREF=GI:14318493 /SEG=NC_001138:+82578,83873 /DEF=alpha-factor pheromone receptor; seven-transmembrane domain protein /NOTE=Ste2p; go_component: integral to plasma membrane [goid GO:0005887] [evidence IDA] [pmid 2839507]; go_function: mating-type alpha-factor pheromone receptor activity [goid GO:0004934] [evidence ISS] [pmid 3001640]; go_process: cell projection biogenesis [goid GO:0030031] [evidence IMP] [pmid 12378535]; go_process: response to pheromone during conjugation with cellular fusion [goid GO:0000749] [evidence TAS] [pmid 3001640] --- --- --- --- --- S0001868 // span:51-73,80-102,133-155,162-184,209-231,244-266,276-298 // numtm:7 S0001868 // STE2 SGDID:S0001868, Chr VI from 82578-83873, Verified ORF // sgd // 10 // --- /// GENEFINDER00000018584 // cdna:GeneFinder chromosome:SGD1:VI:82578:83873:1 // ensembl // 10 // --- /// GENSCAN00000023220 // cdna:Genscan chromosome:SGD1:VI:82578:83873:1 // ensembl // 10 // --- /// YFL026W // cdna:known chromosome:SGD1:VI:82578:83873:1 gene:YFL026W // ensembl // 10 // --- --- No cerevisiae_gene 1.38082285914662 2.92233925493294 1.3124525935827 3.26088721561648 -1.10041237984932 Max fold change at or above threshold 4 3.26088721561648 Max fold change at or above threshold -0.823527531425711 0.723987929372783 0.996524736825047 -0.896985134772119 49.1207346916199 30.1623558656069 0.614045291768665 APPPPP Called_P_>2EXP 3 0 APPP 1 3 0 Yes Yes 2 < x = 3
1773664_at YFL033C.S1 Glucose-repressible protein kinase involved in signal transduction during cell proliferation in response to nutrients, specifically the establishment of stationary phase; originally identified as a regulator of IME2 3.2590932999871 233.582153320313 654.092102050781 RIM15 1324 // age-dependent response to oxidative stress during chronological cell aging // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from direct assay /// 6950 // response to stress // inferred from mutant phenotype /// 40020 // regulation of meiosis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4672 // protein kinase activity // inferred from direct assay 641.3857421875 270.365478515625 196.798828125 666.798461914063 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL033C /GEN=RIM15 /DB_XREF=GI:14318486 /SEG=NC_001138:-69113,74425 /DEF=RIM15 is glucose-repressed; RIM15 is required for IME2 expression /NOTE=Rim15p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein kinase activity [goid GO:0004672] [evidence IDA] [pmid 9744870]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 9744870]; go_process: regulation of meiosis [goid GO:0040020] [evidence IMP] [pmid 9111339]; go_process: response to stress [goid GO:0006950] [evidence IMP] [pmid 9744870] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 3.0E-42 /// ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-25 /// hanks // 1.2.3 // AGC group; AGC I Diacylglycerol-activated/phospholipid-dependent protein kinase C (PKC) family; DPKC53b // 6.0E-48 --- --- S0001861 // RIM15 SGDID:S0001861, Chr VI from 74425-69113, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018545 // cdna:GeneFinder chromosome:SGD1:VI:68828:74386:-1 // ensembl // 11 // --- /// GENSCAN00000023214 // cdna:Genscan chromosome:SGD1:VI:68828:74386:-1 // ensembl // 11 // --- /// YFL033C // cdna:known chromosome:SGD1:VI:69113:74425:-1 gene:YFL033C // ensembl // 11 // --- --- No cerevisiae_gene -2.83009120231417 -2.37229155774202 -1.15643975784948 -3.2590932999871 1.0396215850385 Max fold change at or above threshold 4 3.2590932999871 Max fold change at or above threshold 0.806808162825868 -0.708475445003814 -1.00892895208891 0.910596234266854 443.837127685547 244.85202753779 0.551670899671252 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771775_at YOL047C.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 3.2588712319899 63.169490814209 170.708953857422 --- --- 5737 // cytoplasm // inferred from direct assay --- 149.937713623047 80.3298873901367 46.0090942382813 191.480194091797 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL047C /GEN=GSH2 /DB_XREF=GI:9755359 /SEG=NC_001147:-241612,242745 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Yol047cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005407 // span:92-114,118-140,214-236,293-315 // numtm:4 S0005407 // YOL047C SGDID:S0005407, Chr XV from 242745-242503,242439-241612, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YOL047C // cdna:known chromosome:SGD1:XV:241612:242745:-1 gene:YOL047C // ensembl // 11 // --- GENSCAN00000017431 // ensembl // 5 // Cross Hyb Matching Probes /// GENEFINDER00000022760 // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene -2.12320155728099 -1.86652463353829 -1.18650948802553 -3.2588712319899 1.27706491892487 Max fold change at or above threshold 4 3.2588712319899 Max fold change at or above threshold 0.500963643865077 -0.555781343887102 -1.07681939523419 1.13163709525622 116.939222335815 65.8700320698698 0.563284334837718 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773078_at YGR262C.S1 Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern 3.25804386114995 378.80403137207 884.206115722656 BUD32 282 // bud site selection // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4674 // protein serine/threonine kinase activity // inferred from direct assay 823.459350585938 252.746551513672 504.861511230469 944.952880859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR262C /GEN=BUD32 /DB_XREF=GI:6321701 /SEG=NC_001139:-1016979,1017764 /DEF=Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern /NOTE=Bud32p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence IDA] [pmid 9305753]; go_process: bud site selection [goid GO:0000282] [evidence IMP] [pmid 11452010]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 9305753] --- --- --- hanks // 2.2.11 // CaMK Group; CaMK II KIN1/SNF1/Nim1; YKL453 // 4.0E-5 --- --- S0003494 // BUD32 SGDID:S0003494, Chr VII from 1017765-1016980, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021451 // cdna:GeneFinder chromosome:SGD1:VII:1016671:1017765:-1 // ensembl // 9 // --- /// GENSCAN00000019543 // cdna:Genscan chromosome:SGD1:VII:1016980:1017765:-1 // ensembl // 11 // --- /// YGR262C // cdna:known chromosome:SGD1:VII:1016980:1017765:-1 gene:YGR262C // ensembl // 11 // --- --- No cerevisiae_gene -1.46728676390461 -3.25804386114995 1.13435512785106 -1.63105986942631 1.14754041008459 Max fold change at or above threshold 4 3.25804386114995 Max fold change at or above threshold 0.612558424436334 -1.20868222932156 -0.404140934990743 1.00026473987597 631.505073547363 313.364847141246 0.496219049169275 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775641_at YJL098W.S1 Protein that forms a complex with the Sit4p protein phosphatase and is required for its function; member of a family of similar proteins including Sap4p, Sap155p, and Sap190p 3.2568241306767 92.0772819519043 333.418746948242 SAP185 82 // G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 82 // G1/S transition of mitotic cell cycle // inferred from physical interaction /// 82 // G1/S transition of mitotic cell cycle // inferred from genetic interaction 5737 // cytoplasm // inferred from physical interaction /// 5739 // mitochondrion // inferred from direct assay 4722 // protein serine/threonine phosphatase activity // inferred from physical interaction 296.386749267578 91.0048370361328 93.1497268676758 370.450744628906 0.000244141003349796 0.0239257998764515 0.00585938012227416 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL098W /GEN=SAP185 /DB_XREF=GI:6322363 /SEG=NC_001142:+241999,245175 /DEF=Protein that forms a complex with the Sit4p protein phosphatase and is required for its function; member of a family of similar proteins including Sap4p, Sap155p, and Sap190p /NOTE=Sap185p; go_component: cytoplasm [goid GO:0005737] [evidence IPI] [pmid 8649382]; go_function: protein serine/threonine phosphatase activity [goid GO:0004722] [evidence IPI] [pmid 8649382]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IGI,IMP,IPI] [pmid 8649382] --- --- --- --- --- --- S0003634 // SAP185 SGDID:S0003634, Chr X from 241999-245175, Verified ORF // sgd // 11 // --- /// GENSCAN00000024064 // cdna:Genscan chromosome:SGD1:X:241999:245175:1 // ensembl // 11 // --- /// GENEFINDER00000024273 // cdna:GeneFinder chromosome:SGD1:X:241999:245175:1 // ensembl // 11 // --- /// YJL098W // cdna:known chromosome:SGD1:X:241999:245175:1 gene:YJL098W // ensembl // 11 // --- --- No cerevisiae_gene -1.71713372009503 -3.2568241306767 -1.22566021363109 -3.18183165140797 1.24988969832272 Max fold change at or above threshold 4 3.2568241306767 Max fold change at or above threshold 0.586591989867487 -0.853833727253936 -0.838790754675781 1.10603249206223 212.748014450073 142.584174796521 0.670202141087348 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1773648_at YDL130W.S1 Ribosomal protein P1 beta, component of the ribosomal stalk, which is involved in interaction of translational elongation factors with ribosome; accumulation is regulated by phosphorylation and interaction with the P2 stalk component 3.25674975038965 2210.05749511719 5647.84619140625 RPP1B 6412 // protein biosynthesis // traceable author statement /// 6414 // translational elongation // inferred from sequence similarity 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 6463.94140625 1984.78295898438 2435.33203125 4831.7509765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL130W /GEN=RPP1B /DB_XREF=GI:6320073 /SEG=NC_001136:+229906,230527 /DEF=Homology to rat P1, human P1, and E. coli L12eIIB /NOTE=Rpp1bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9559554]; go_process: translational elongation [goid GO:0006414] [evidence ISS] [pmid 9175862] --- --- --- --- --- --- S0002288 // RPP1B SGDID:S0002288, Chr IV from 229906-230019,230321-230527, intron sequence removed, Verified ORF // sgd // 11 // --- /// YDL130W // cdna:known chromosome:SGD1:IV:229906:230527:1 gene:YDL130W // ensembl // 11 // --- --- No cerevisiae_gene -1.24336489109599 -3.25674975038965 -1.6758190680525 -2.6542341345267 -1.33780516371908 Max fold change at or above threshold 4 3.25674975038965 Max fold change at or above threshold 1.20613951320888 -0.925029020203889 -0.710659286050594 0.429548793045599 3928.95184326172 2101.73826097783 0.534936121597514 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774252_at SPAC3H1.10.S1 --- 3.25571167560226 --- --- --- --- 0.306280344724655 0.224785342812538 0.997160494327545 0.386959671974182 0.904784977436066 0.953857004642487 0.82275390625 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H1.10 /DEF=phytochelatin synthetase (PMID 10368185) (PMID 10369673) --- --- --- --- --- --- SPAC3H1.10 // |||phytochelatin synthetase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.24562171559735 -1.36254588885753 -1.69356736729753 3.25571167560226 1.26341660063775 Max fold change at or above threshold 0 3.25571167560226 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770079_at YNR061C.S1 Hypothetical protein 3.25431828652205 240.141143798828 666.110168457031 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 630.76708984375 193.824645996094 286.457641601563 701.453247070313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR061C /GEN=FRE4 /DB_XREF=GI:6324389 /SEG=NC_001146:-742878,743537 /DEF=Hypothetical ORF /NOTE=Ynr061cp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005344 // span:13-35,41-60,65-87,117-139 // numtm:4 S0005344 // YNR061C SGDID:S0005344, Chr XIV from 743538-742879, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020088 // cdna:Genscan chromosome:SGD1:XIV:742879:743328:-1 // ensembl // 9 // --- /// YNR061C // cdna:known chromosome:SGD1:XIV:742879:743538:-1 gene:YNR061C // ensembl // 11 // --- GENEFINDER00000020484 // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene 1.53723087200837 -3.25431828652205 1.32041577676611 -2.20195588540484 1.1120638003547 Max fold change at or above threshold 4 3.25431828652205 Max fold change at or above threshold 0.709170867746152 -1.03516797019789 -0.665363355917713 0.991360458369446 453.12565612793 250.491724625393 0.552808522840897 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780079_at YEL041W.S1 Hypothetical protein 3.25410299951938 129.292499542236 339.013748168945 --- --- --- --- 329.406402587891 101.228019714355 157.356979370117 348.62109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL041W /GEN=GDA1 /DB_XREF=GI:6320794 /SEG=NC_001137:+75944,77431 /DEF=Hypothetical ORF /NOTE=Yel041wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000767 // YEL041W SGDID:S0000767, Chr V from 75944-77431, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016769 // cdna:Genscan chromosome:SGD1:V:75944:77431:1 // ensembl // 11 // --- /// YEL041W // cdna:known chromosome:SGD1:V:75944:77431:1 gene:YEL041W // ensembl // 11 // --- --- No cerevisiae_gene -2.01525350931066 -3.25410299951938 1.60645522243908 -2.09337014415546 1.05833126196441 Max fold change at or above threshold 4 3.25410299951938 Max fold change at or above threshold 0.771398917828579 -1.07648033591551 -0.621925707313354 0.927007125400288 234.153123855591 123.481219030524 0.527352430739631 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769982_at YBR076W.S1 Non-essential protein of unknown function 3.25350246127046 85.0338745117188 52.9882965087891 ECM8 7047 // cell wall organization and biogenesis // inferred from mutant phenotype --- --- 35.4397735595703 87.8595809936523 82.2081680297852 70.5368194580078 0.000244141003349796 0.000732421991415322 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR076W /GEN=ECM8 /DB_XREF=GI:6319550 /SEG=NC_001134:+390332,391351 /DEF=Non-essential protein of unknown function /NOTE=Ecm8p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584] --- --- --- --- --- --- S0000280 // ECM8 SGDID:S0000280, Chr II from 390369-391388, Verified ORF // sgd // 11 // --- /// GENSCAN00000021199 // cdna:Genscan chromosome:SGD1:II:390708:391388:1 // ensembl // 11 // --- /// YBR076W // cdna:known chromosome:SGD1:II:390369:391388:1 gene:YBR076W // ensembl // 11 // --- --- No cerevisiae_gene 3.25350246127046 2.47912365596722 2.43026400370967 2.3196583886633 1.99032929314414 Max fold change at or above threshold 4 3.25350246127046 Max fold change at or above threshold -1.42768792546633 0.801570384094166 0.561232620047601 0.0648849213245587 69.0110855102539 23.5144609349541 0.340734546647006 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772796_at YPL083C.S1 Subunit of the tRNA splicing endonuclease, which is composed of Sen2p, Sen15p, Sen34p, and Sen54p 3.25346113771854 152.960296630859 63.3245811462402 SEN54 6388 // tRNA splicing // traceable author statement 214 // tRNA-intron endonuclease complex // traceable author statement /// 5637 // nuclear inner membrane // traceable author statement /// 5741 // mitochondrial outer membrane // inferred from direct assay /// 5741 // mitochondrial outer membrane // inferred from physical interaction /// 5741 // mitochondrial outer membrane // inferred from mutant phenotype 213 // tRNA-intron endonuclease activity // traceable author statement 55.0348205566406 126.866943359375 179.053649902344 71.6143417358398 0.00415039015933871 0.00122069998178631 0.000732421991415322 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL083C /GEN=SEN54 /DB_XREF=GI:6325174 /SEG=NC_001148:-396697,398100 /DEF=Subunit of the tRNA splicing endonuclease, which is composed of Sen2p, Sen15p, Sen34p, and Sen54p /NOTE=Sen54p; go_component: mitochondrial outer membrane [goid GO:0005741] [evidence IDA,IMP,IPI] [pmid 12925762]; go_component: nuclear inner membrane [goid GO:0005637] [evidence TAS] [pmid 9582290]; go_component: tRNA-intron endonuclease complex [goid GO:0000214] [evidence TAS] [pmid 9582290]; go_function: tRNA-intron endonuclease activity [goid GO:0000213] [evidence TAS] [pmid 9582290]; go_process: tRNA splicing [goid GO:0006388] [evidence TAS] [pmid 9582290] --- --- --- --- --- --- S0006004 // SEN54 SGDID:S0006004, Chr XVI from 398102-396699, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020822 // cdna:GeneFinder chromosome:SGD1:XVI:396699:397760:-1 // ensembl // 11 // --- /// YPL083C // cdna:known chromosome:SGD1:XVI:396699:398102:-1 gene:YPL083C // ensembl // 11 // --- --- No cerevisiae_gene 2.04575391999805 2.30521226518412 1.74033454383738 3.25346113771854 1.30125511469845 Max fold change at or above threshold 4 3.25346113771854 Max fold change at or above threshold -0.942076294988074 0.332154074150297 1.25789431052031 -0.64797208968253 108.14243888855 56.3729483635733 0.521284233488303 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773104_s_at YBL005W-A.S1 TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// Ty ORF /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition 3.25270582067648 51.6808586120605 26.8167219161987 --- 6319 // Ty element transposition // inferred from sequence similarity 943 // retrotransposon nucleocapsid // inferred from sequence similarity 3723 // RNA binding // inferred from sequence similarity /// 3887 // DNA-directed DNA polymerase activity // inferred from sequence similarity /// 3964 // RNA-directed DNA polymerase activity // inferred from sequence similarity /// 4540 // ribonuclease activity // inferred from sequence similarity /// 5515 // protein binding // inferred from sequence similarity /// 8233 // peptidase activity // inferred from sequence similarity 26.020715713501 53.0522766113281 50.309440612793 27.6127281188965 0.00415039015933871 0.00195312988944352 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL005W-A /GEN=PDR3 /DB_XREF=GI:6319467 /SEG=NC_001134:+221295,222617 /DEF=TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /NOTE=Ybl005w-ap; go_component: retrotransposon nucleocapsid [goid GO:0000943] [evidence ISS] [pmid 9582191]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 9582191]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 9582191]; go_process: Ty element transposition [goid GO:0006319] [evidence ISS] [pmid 9582191] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.60000002384186 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.70000004768372 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.79999995231628 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 6.30000019073486 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 9.19999980926514 AAN75288.1 // span:79-101,111-133,154-176,201-223,230-249,274-293,314-336,364-386,391-413 // numtm:9 S0002146 // YBL005W-A SGDID:S0002146, Chr II from 221333-222655, Ty ORF // sgd // 11 // --- /// S0002147 // YBL005W-B SGDID:S0002147, Chr II from 221333-222637,222639-226601, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007227 // YDR170W-A SGDID:S0007227, Chr IV from 803190-804512, Ty ORF // sgd // 11 // --- /// S0004648 // YMR045C SGDID:S0004648, Chr XIII from 362626-361322,361320-357358, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0004649 // YMR046C SGDID:S0004649, Chr XIII from 362626-361304, reverse complement, Ty ORF // sgd // 11 // --- /// S0007386 // YNL284C-A SGDID:S0007386, Chr XIV from 102230-100908, reverse complement, Ty ORF // sgd // 11 // --- /// S0007387 // YNL284C-B SGDID:S0007387, Chr XIV from 102230-100926,100924-96962, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// GENSCAN00000021134 // cdna:Genscan chromosome:SGD1:II:221333:222655:1 // ensembl // 11 // --- /// GENEFINDER00000022400 // cdna:GeneFinder chromosome:SGD1:II:221333:222655:1 // ensembl // 11 // --- /// GENEFINDER00000023775 // cdna:GeneFinder chromosome:SGD1:IV:803190:804512:1 // ensembl // 11 // --- /// GENSCAN00000025226 // cdna:Genscan chromosome:SGD1:IV:803190:804512:1 // ensembl // 11 // --- /// GENSCAN00000018753 // cdna:Genscan chromosome:SGD1:XIII:361304:362626:-1 // ensembl // 11 // --- /// GENEFINDER00000021998 // cdna:GeneFinder chromosome:SGD1:XIII:361304:362626:-1 // ensembl // 11 // --- /// GENSCAN00000019814 // cdna:Genscan chromosome:SGD1:XIV:100908:102230:-1 // ensembl // 11 // --- /// GENEFINDER00000020627 // cdna:GeneFinder chromosome:SGD1:XIV:100908:102230:-1 // ensembl // 11 // --- /// YBL005W-A // cdna:known chromosome:SGD1:II:221333:222655:1 gene:YBL005W-A // ensembl // 11 // --- /// YBL005W-B // cdna:known chromosome:SGD1:II:221333:226601:1 gene:YBL005W-B // ensembl // 11 // --- /// YDR170W-A // cdna:known chromosome:SGD1:IV:803190:804512:1 gene:YDR170W-A // ensembl // 11 // --- /// YMR045C // cdna:known chromosome:SGD1:XIII:357358:362626:-1 gene:YMR045C // ensembl // 11 // --- /// YMR046C // cdna:known chromosome:SGD1:XIII:361304:362626:-1 gene:YMR046C // ensembl // 11 // --- /// YNL284C-B // cdna:known chromosome:SGD1:XIV:96962:102230:-1 gene:YNL284C-B // ensembl // 11 // --- /// YNL284C-A // cdna:known chromosome:SGD1:XIV:100908:102230:-1 gene:YNL284C-A // ensembl // 11 // --- --- No cerevisiae_gene 3.25270582067648 2.03884770870471 1.99380957047793 1.93343800250236 1.06118249870312 Max fold change at or above threshold 4 3.25270582067648 Max fold change at or above threshold -0.917750610659505 0.957672106842602 0.76737688262383 -0.807298378806926 39.2487902641296 14.4135829461588 0.367236361914871 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776830_at SPAC11H11.01.S1 --- 3.25125994144017 --- --- --- --- 0.809380829334259 0.250339359045029 0.48134633898735 0.378662377595901 0.943848013877869 0.989257991313934 0.995850026607513 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11H11.01 /DEF=hypothetical protein --- --- --- --- --- --- SPAC11H11.01 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.09648086362062 -3.23313454353247 -3.25125994144017 -1.68149368506058 -2.13747358391651 Max fold change at or above threshold 0 3.25125994144017 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772106_at SPBC16A3.18.S1 --- 3.25097457106122 --- --- --- --- 7.47637557983398 6.22120428085327 18.3605937957764 11.913519859314 0.334473013877869 0.366210997104645 0.0952147990465164 0.00805663969367743 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16A3.18 /DEF=hypothetical protein --- --- --- --- --- --- SPBC16A3.18 // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.25097457106122 -1.20175696574435 -1.95197151152433 2.45581479952671 1.59348868072496 Max fold change at or above threshold 4 3.25097457106122 Max fold change at or above threshold AAAMAP No 4 0 AAAP 3 1 0 No No x = 1
1778951_at YOL078W.S1 Component of a membrane-bound complex containing the Tor2p kinase and other proteins, which may have a role in regulation of cell growth 3.25001272577064 171.470840454102 212.297065734863 AVO1 1558 // regulation of cell growth // inferred from physical interaction 5737 // cytoplasm // inferred from physical interaction --- 202.396072387695 139.075546264648 203.866134643555 222.198059082031 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL078W /GEN=AVO1 /DB_XREF=GI:6324494 /SEG=NC_001147:+181681,185211 /DEF=Component of a membrane-bound complex containing the Tor2p kinase and other proteins, which may have a role in regulation of cell growth /NOTE=Avo1p; go_component: cytoplasm [goid GO:0005737] [evidence IPI] [pmid 12408816]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND] [pmid 12408816]; go_process: regulation of cell growth [goid GO:0001558] [evidence IPI] [pmid 12408816] --- --- --- --- --- --- S0005438 // AVO1 SGDID:S0005438, Chr XV from 181681-185211, Verified ORF // sgd // 11 // --- /// GENSCAN00000017403 // cdna:Genscan chromosome:SGD1:XV:181681:185211:1 // ensembl // 11 // --- /// GENEFINDER00000022550 // cdna:GeneFinder chromosome:SGD1:XV:181681:185211:1 // ensembl // 11 // --- /// YOL078W // cdna:known chromosome:SGD1:XV:181681:185211:1 gene:YOL078W // ensembl // 11 // --- --- No cerevisiae_gene -3.25001272577064 -1.455295900852 1.37983489277816 1.00726329438371 1.09783780120201 Max fold change at or above threshold 4 3.25001272577064 Max fold change at or above threshold 0.289272643817402 -1.45318246809793 0.329725837266526 0.834183987014005 191.883953094482 36.3398320507918 0.189384424620949 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777398_at SPAC343.12.S1 --- 3.24849213111376 --- --- --- --- 4.80791997909546 15.6184902191162 9.25331592559814 7.21178579330444 0.601073980331421 0.42333984375 0.567627012729645 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC343.12 /GEN=rds1 /DEF=involved in response to stress --- --- --- --- --- --- SPAC343.12 // |rds1||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.09961787927111 3.24849213111376 1.48311419914372 1.92459857190448 1.49998041245712 Max fold change at or above threshold 4 3.24849213111376 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777767_at SPAC9E9.12c.S1 --- 3.24789407103744 --- --- --- --- 1.7300238609314 1.62703192234039 4.78817367553711 3.23969388008118 0.753906011581421 0.665526986122131 0.432372987270355 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9E9.12c /DEF=transporter activity (PMID 9037770) --- --- --- --- --- --- SPAC9E9.12c // |||ABC transporter family |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.32427153103685 -1.06330050269872 -3.24789407103744 2.76769227504139 1.87262959386989 Max fold change at or above threshold 2 3.24789407103744 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775398_at SPAC4A8.11c.S1 --- 3.24786182586063 --- --- --- --- 11.1330089569092 12.8146810531616 5.99929666519165 7.95708847045898 0.171387001872063 0.5 0.633789002895355 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4A8.11c /GEN=lsd1 /DEF=fatty acid synthase (subunit alpha) (PMID 9693066) --- --- --- --- --- --- D89216 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1200. // gb // 11 // --- /// SPAC4A8.11c // |lsd1|fas2|fatty acid synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.08472593997976 1.15105279289377 -3.24786182586063 -1.8557190247823 -1.3991309758891 Max fold change at or above threshold 4 3.24786182586063 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771626_at YKR081C.S1 Essential protein involved in the processing of pre-rRNA and the assembly of the 60S ribosomal subunit; interacts with ribosomal protein L11; localizes predominantly to the nucleolus; constituent of 66S pre-ribosomal particles 3.24678127956907 297.323631286621 757.660797119141 RPF2 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 27 // ribosomal large subunit assembly and maintenance // inferred from physical interaction /// 30489 // processing of 27S pre-rRNA // inferred from mutant phenotype 5730 // nucleolus // inferred from direct assay /// 5730 // nucleolus // inferred from physical interaction 8097 // 5S rRNA binding // inferred from physical interaction /// 8312 // 7S RNA binding // inferred from physical interaction /// 19843 // rRNA binding // inferred from physical interaction 711.182678222656 219.042373657227 375.604888916016 804.138916015625 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR081C /GEN=RPF2 /DB_XREF=GI:6322934 /SEG=NC_001143:-591148,592182 /DEF=Rpf2p /NOTE=go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11864606]; go_component: nucleolus [goid GO:0005730] [evidence IPI] [pmid 11864607]; go_function: 5S rRNA binding [goid GO:0008097] [evidence IPI] [pmid 11864606]; go_function: 7S RNA binding [goid GO:0008312] [evidence IPI] [pmid 11864606]; go_function: rRNA binding [goid GO:0019843] [evidence IPI] [pmid 11864606]; go_process: processing of 27S pre-rRNA [goid GO:0030489] [evidence IMP] [pmid 11864606]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 11864606]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IPI] [pmid 11864607] --- --- --- --- --- --- S0001789 // RPF2 SGDID:S0001789, Chr XI from 592182-591148, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018483 // cdna:Genscan chromosome:SGD1:XI:591148:592182:-1 // ensembl // 11 // --- /// GENEFINDER00000023047 // cdna:GeneFinder chromosome:SGD1:XI:591148:592182:-1 // ensembl // 11 // --- /// YKR081C // cdna:known chromosome:SGD1:XI:591148:592182:-1 gene:YKR081C // ensembl // 11 // --- --- No cerevisiae_gene 2.28768581439591 -3.24678127956907 1.02111042234147 -1.89343296429157 1.13070655492521 Max fold change at or above threshold 4 3.24678127956907 Max fold change at or above threshold 0.665605382786661 -1.11767301194673 -0.550366192537476 1.00243382169755 527.492214202881 275.975027802099 0.523183130236601 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778617_at YJL216C.S1 Protein of unknown function, transcriptionally activated by Yrm1p along with genes involved in multidrug resistance 3.24593796322277 113.34321975708 43.4349040985107 --- --- --- 4553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from sequence similarity 41.5462036132813 91.8300399780273 134.856399536133 45.3236045837402 0.018554700538516 0.00415039015933871 0.00122069998178631 0.00805663969367743 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL216C /GEN=HXT9 /DB_XREF=GI:6322245 /SEG=NC_001142:-24341,26086 /DEF=Protein of unknown function, transcriptionally activated by Yrm1p along with genes involved in multidrug resistance /NOTE=Yjl216cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: hydrolase activity, hydrolyzing O-glycosyl compounds [goid GO:0004553] [evidence ISS] [pmid 10592175]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003752 // YJL216C SGDID:S0003752, Chr X from 26086-24341, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000023976 // cdna:Genscan chromosome:SGD1:X:24341:26086:-1 // ensembl // 11 // --- /// GENEFINDER00000024272 // cdna:GeneFinder chromosome:SGD1:X:24341:26086:-1 // ensembl // 11 // --- /// YJL216C // cdna:known chromosome:SGD1:X:24341:26086:-1 gene:YJL216C // ensembl // 11 // --- --- No cerevisiae_gene 1.75344042762303 2.21031121959532 1.93601741166723 3.24593796322277 1.0909204847119 Max fold change at or above threshold 4 3.24593796322277 Max fold change at or above threshold -0.83647826410358 0.30516323927243 1.28203138144049 -0.750716356609341 78.3890619277954 44.0452070251905 0.561879501323294 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1776398_at SPCC13B11.01.S1 --- 3.24518671891037 --- --- --- --- 8.22056007385254 6.79572486877441 10.7554903030396 2.53315472602844 0.129638999700546 0.303710997104645 0.129638999700546 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC13B11.01 /GEN=adh1 /DEF=alcohol dehydrogenase --- --- --- --- --- --- SPCC13B11.01 // |adh1|adh|alcohol dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.70859934759155 -1.20966640536392 -1.59852258885204 1.30836466206846 -3.24518671891037 Max fold change at or above threshold 4 3.24518671891037 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770187_at SPAPB1A11.03.S1 --- 3.24396587192366 --- --- --- --- 0.211294919252396 0.440283626317978 0.685433506965637 0.203445002436638 0.985840022563934 0.904784977436066 0.919434010982513 0.994140982627869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1A11.03 /DEF=FMN dependent dehydrogenase --- --- --- --- --- --- SPAPB1A11.03 // |||FMN dependent dehydrogenase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.10467918996102 2.0837397693981 2.07469815078702 3.24396587192366 -1.03858495771211 Max fold change at or above threshold 0 3.24396587192366 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773973_at YLR353W.S1 Protein involved in bud-site selection; diploid mutants display a unipolar budding pattern instead of the wild-type bipolar pattern, and bud at the proximal pole 3.24353873795318 258.966682434082 787.446868896484 BUD8 282 // bud site selection // inferred from mutant phenotype /// 7124 // pseudohyphal growth // inferred from mutant phenotype 131 // incipient bud site // inferred from direct assay /// 5934 // bud tip // inferred from direct assay --- 756.947143554688 233.37077331543 284.562591552734 817.946594238281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR353W /GEN=BUD8 /DB_XREF=GI:6323385 /SEG=NC_001144:+834351,836162 /DEF=Protein involved in bud-site selection; diploid mutants display a unipolar budding pattern instead of the wild-type bipolar pattern, and bud at the proximal pole /NOTE=Bud8p; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 11514631]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 11514631]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: bud site selection [goid GO:0000282] [evidence IMP] [pmid 8657162]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 9055077] --- --- --- --- --- S0004345 // span:516-538,578-600 // numtm:2 S0004345 // BUD8 SGDID:S0004345, Chr XII from 834351-836162, Verified ORF // sgd // 11 // --- /// GENSCAN00000018088 // cdna:Genscan chromosome:SGD1:XII:834351:836162:1 // ensembl // 11 // --- /// GENEFINDER00000024844 // cdna:GeneFinder chromosome:SGD1:XII:834591:836162:1 // ensembl // 11 // --- /// YLR353W // cdna:known chromosome:SGD1:XII:834351:836162:1 gene:YLR353W // ensembl // 11 // --- --- No cerevisiae_gene -1.72859859822887 -3.24353873795318 -1.27724135800244 -2.6600374259468 1.08058614290707 Max fold change at or above threshold 4 3.24353873795318 Max fold change at or above threshold 0.76175318359919 -0.944567254279878 -0.777734580623144 0.960548651303832 523.206775665283 306.845278657071 0.586470384040616 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779584_at YPL242C.S1 Essential protein required for determination of budding pattern, promotes localization of axial markers Bud4p and Cdc12p and functionally interacts with Sec3p, localizes to the contractile ring during anaphase, member of the IQGAP family 3.24328587147465 131.029956817627 364.980926513672 IQG1 910 // cytokinesis // inferred from mutant phenotype /// 6970 // response to osmotic stress // inferred from mutant phenotype /// 7015 // actin filament organization // inferred from physical interaction 142 // contractile ring (sensu Saccharomyces) // inferred from direct assay 8092 // cytoskeletal protein binding // inferred from physical interaction 349.849395751953 107.868812561035 154.191101074219 380.112457275391 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL242C /GEN=IQG1 /DB_XREF=GI:6325014 /SEG=NC_001148:-90622,95109 /DEF=Essential protein required for determination of budding pattern, promotes localization of axial markers Bud4p and Cdc12p and functionally interacts with Sec3p, localizes to the contractile ring during anaphase, member of the IQGAP family /NOTE=Iqg1p; go_component: contractile ring (sensu Saccharomyces) [goid GO:0000142] [evidence IDA] [pmid 10652251]; go_function: cytoskeletal protein binding [goid GO:0008092] [evidence IPI] [pmid 9950677]; go_process: actin filament organization [goid GO:0007015] [evidence IPI] [pmid 9950677]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 9442111]; go_process: response to osmotic stress [goid GO:0006970] [evidence IMP] [pmid 10652251] --- --- --- --- --- --- S0006163 // IQG1 SGDID:S0006163, Chr XVI from 95109-90622, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017000 // cdna:Genscan chromosome:SGD1:XVI:90622:95109:-1 // ensembl // 11 // --- /// GENEFINDER00000020737 // cdna:GeneFinder chromosome:SGD1:XVI:90622:93879:-1 // ensembl // 11 // --- /// YPL242C // cdna:known chromosome:SGD1:XVI:90622:95109:-1 gene:YPL242C // ensembl // 11 // --- --- No cerevisiae_gene -1.58304610020134 -3.24328587147465 -1.4384501345426 -2.26893376670004 1.08650311217028 Max fold change at or above threshold 4 3.24328587147465 Max fold change at or above threshold 0.743671466128158 -1.02328717850225 -0.685038683320899 0.964654395694991 248.005441665649 136.947508039461 0.552195577321597 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775782_at SPCC1450.15.S1 --- 3.24224599889607 --- --- --- --- 3.07068419456482 9.95591354370117 5.82989120483398 2.22967505455017 0.466064006090164 0.018554700538516 0.018554700538516 0.194580003619194 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1450.15 /DEF=phosphoethanolamine N-methyltransferase activity (predicted) --- --- --- --- --- --- SPCC1450.15 // |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.19335202513572 3.24224599889607 1.18408933098736 1.89856424022797 -1.37718910578399 Max fold change at or above threshold 3 3.24224599889607 Max fold change at or above threshold AAPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1771037_at SPAC664.01c.S1 --- 3.24222806717534 --- --- --- --- 3.27500319480896 1.01010882854462 5.55014610290527 1.61739861965179 0.274170011281967 0.805419981479645 0.334473013877869 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC664.01c /GEN=swi6 /DEF=heterochromatin protein 1 (HP1) --- --- --- --- --- --- SPAC664.01c // |swi6|SPAC824.10c|heterochromatin protein 1 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.85433884848378 -3.24222806717534 -3.09155197434637 1.6946994469204 -2.02485840844481 Max fold change at or above threshold 2 3.24222806717534 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778337_at SPAC959.10.S1 --- 3.23999006849544 --- --- --- --- 11.9968090057373 12.0596952438354 9.46252822875977 3.96912956237793 0.030273400247097 0.14453125 0.219482004642487 0.171387001872063 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC959.10 /DEF=tRNA-splicing endonuclease (subunit) (predicted) --- --- --- --- --- --- SPAC959.10 // |||tRNA-splicing endonuclease |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.48320536217281 1.00524191375124 -3.23999006849544 -1.2678227970063 -3.02252894928175 Max fold change at or above threshold 4 3.23999006849544 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1778430_at SPBC1703.10.S1 --- 3.2393968334718 --- --- --- --- 1.32771575450897 1.32478582859039 3.94527506828308 0.981260240077972 0.828612983226776 0.850341975688934 0.665526986122131 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1703.10 /GEN=ypt1 /DEF=GTPase --- --- --- --- --- --- SPBC1703.10 // |ypt1||GTPase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.683401948717 -1.00221162232819 3.2393968334718 2.97147567533546 -1.35307199892606 Max fold change at or above threshold 1 3.2393968334718 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773575_at YPR104C.S1 Putative transcriptional regulator with similarity to DNA-binding domain of Drosophila forkhead; required for rRNA processing 3.23938945021603 88.6432609558105 255.868507385254 FHL1 6364 // rRNA processing // inferred from mutant phenotype /// 6383 // transcription from RNA polymerase III promoter // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay 3700 // transcription factor activity // inferred from mutant phenotype /// 3700 // transcription factor activity // inferred from sequence similarity 235.896713256836 72.8213500976563 104.465171813965 275.840301513672 0.000244141003349796 0.0107421996071935 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR104C /GEN=FHL1 /DB_XREF=GI:6325361 /SEG=NC_001148:-733619,736429 /DEF=Putative transcriptional regulator with similarity to DNA-binding domain of Drosophila forkhead; required for rRNA processing /NOTE=Fhl1p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 8164651]; go_function: transcription factor activity [goid GO:0003700] [evidence IMP,ISS] [pmid 8164651]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 8164651]; go_process: transcription from Pol III promoter [goid GO:0006383] [evidence IGI] [pmid 8164651] --- --- --- --- scop // a.4.5.Forkhead DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Forkhead DNA-binding domain // 6.00000011306601E-31 --- S0006308 // FHL1 SGDID:S0006308, Chr XVI from 736431-733621, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017260 // cdna:Genscan chromosome:SGD1:XVI:733621:736419:-1 // ensembl // 11 // --- /// GENEFINDER00000020928 // cdna:GeneFinder chromosome:SGD1:XVI:733621:736431:-1 // ensembl // 11 // --- /// YPR104C // cdna:known chromosome:SGD1:XVI:733621:736431:-1 gene:YPR104C // ensembl // 11 // --- --- No cerevisiae_gene -1.47234780097735 -3.23938945021603 1.17312304415207 -2.25813741709944 1.16932659936362 Max fold change at or above threshold 4 3.23938945021603 Max fold change at or above threshold 0.644375921992919 -1.00679423085855 -0.686394306995616 1.04881261586125 172.255884170532 98.7635119721358 0.573353487735493 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1773727_at YFR055W.S1 Hypothetical protein 3.23456972752145 223.140228271484 192.583251953125 --- 6790 // sulfur metabolism // inferred from sequence similarity /// 6878 // copper ion homeostasis // inferred from expression pattern --- 4121 // cystathionine beta-lyase activity // inferred from sequence similarity 175.972610473633 169.855804443359 276.424652099609 209.193893432617 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR055W /GEN=HXK1 /DB_XREF=GI:14318580 /SEG=NC_001138:+264191,265213 /DEF=Hypothetical ORF /NOTE=Yfr055wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: cystathionine beta-lyase activity [goid GO:0004121] [evidence ISS] [pmid 10922376]; go_process: copper ion homeostasis [goid GO:0006878] [evidence IEP] [pmid 10922376]; go_process: sulfur metabolism [goid GO:0006790] [evidence ISS] [pmid 10821189] --- --- --- --- --- --- S0001952 // YFR055W SGDID:S0001952, Chr VI from 264191-265213, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018555 // cdna:GeneFinder chromosome:SGD1:VI:264191:265100:1 // ensembl // 9 // --- /// GENSCAN00000023290 // cdna:Genscan chromosome:SGD1:VI:264191:265213:1 // ensembl // 11 // --- /// YFR055W // cdna:known chromosome:SGD1:VI:264191:265213:1 gene:YFR055W // ensembl // 11 // --- --- No cerevisiae_gene 3.23456972752145 -1.0360117574452 1.11317896030025 1.5708390718056 1.188786668957 Max fold change at or above threshold 4 3.23456972752145 Max fold change at or above threshold -0.652566900976149 -0.777738870242037 1.40304509732362 0.0272606738945673 207.861740112305 48.8672189640177 0.235094822826054 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770273_at SPAC17H9.02.S1 --- 3.23372656964219 --- --- --- --- 8.87950801849365 5.05499172210693 2.74590563774109 9.65631675720215 0.129638999700546 0.625732421875 0.633789002895355 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17H9.02 /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPAC17H9.02 // |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.20935795049054 -1.75658210866321 -1.17864622209884 -3.23372656964219 1.08748330843225 Max fold change at or above threshold 4 3.23372656964219 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775248_s_at SPBC18E5.04.S1 --- 3.23364969463377 --- --- --- --- 14.2411499023438 11.8222856521606 12.322229385376 5.50271129608154 0.111571997404099 0.274170011281967 0.0676269978284836 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18E5.04 /GEN=rpl1001 /DEF=60S ribosomal protein L10 --- --- --- --- --- --- U33214 // Schizosaccharomyces pombe QM homolog (SPQM) mRNA, complete cds. // gb // 10 // --- /// SPBC18E5.04 // |rpl1001|rpl10-1|60S ribosomal protein L10|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPAP7G5.05 // |rpl1002|rpl10-2|60S ribosomal protein L10|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.23364969463377 -1.20460208130236 -1.66402287855839 -1.15572835539364 -2.58802418227626 Max fold change at or above threshold 4 3.23364969463377 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772432_at SPCC4G3.05c.S1 --- 3.23286735077347 --- --- --- --- 1.1526780128479 0.846755862236023 3.62040448188782 0.356549739837646 0.601073980331421 0.932372987270355 0.601073980331421 0.901123046875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4G3.05c /GEN=mus81 /DEF=endodeoxyribonuclease RUS activity (PMID 11741546) --- --- --- --- --- --- SPCC4G3.05c // |mus81||Holliday junction resolvase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.13049358778923 -1.36128731344597 -2.85117655995896 3.14086365969882 -3.23286735077347 Max fold change at or above threshold 1 3.23286735077347 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778872_at SPCC4E9.02.S1 --- 3.23279340364223 --- --- --- --- 0.803958892822266 0.340267568826675 0.694603085517883 0.378454834222794 0.904784977436066 0.953857004642487 0.919434010982513 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4E9.02 /GEN=cig1 /DEF=cyclin --- --- --- --- --- --- SPCC4E9.02 // |cig1|SPCC645.01|cyclin|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.23279340364223 -2.3627255914941 -2.71616727832253 -1.15743639725247 -2.12431925852738 Max fold change at or above threshold 0 3.23279340364223 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773851_at SPBC17D11.01.S1 --- 3.23210195829758 --- --- --- --- 1.12607657909393 2.43355846405029 3.63959431648254 2.99820756912231 0.665526986122131 0.774169921875 0.696289002895355 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17D11.01 /DEF=peptidase family C48 --- --- --- --- --- --- D89156 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0639. // gb // 11 // --- /// SPBC17D11.01 // |nep1||nedd8 protease Nep1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.4988743624058 2.1610949994257 1.1445374681817 3.23210195829758 2.6625254665493 Max fold change at or above threshold 2 3.23210195829758 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779518_at SPBC3B9.03.S1 --- 3.23186303358835 --- --- --- --- 2.44568133354187 2.24299454689026 1.99546349048615 3.62297224998474 0.533936023712158 0.274170011281967 0.524169921875 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B9.03 /DEF=GTP binding --- --- --- --- --- --- SPBC3B9.03 // |||signal recognition particle receptor alpha subunit Srp101|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.23186303358835 -1.09036436888918 1.04575035648027 -1.22562068672379 1.48137543526078 Max fold change at or above threshold 1 3.23186303358835 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777668_at YPR198W.S1 Membrane-associated multidrug transporter, acts as an extrusion permease, member of the drug-resistance protein family within the major facilitator superfamily (MFS), partial multicopy suppressor of gal11 mutations 3.23167585889953 99.810245513916 37.2169799804688 SGE1 15893 // drug transport // inferred from mutant phenotype /// 42493 // response to drug // inferred from mutant phenotype 5887 // integral to plasma membrane // inferred from direct assay 8559 // xenobiotic-transporting ATPase activity // inferred from mutant phenotype 36.8297920227051 80.5985412597656 119.021949768066 37.6041679382324 0.00292969006113708 0.000732421991415322 0.000244141003349796 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR198W /GEN=SGE1 /DB_XREF=GI:6325455 /SEG=NC_001148:+934028,935659 /DEF=multi-copy suppressor of gal11 null; member of drug-resistance protein family /NOTE=Sge1p; go_component: integral to plasma membrane [goid GO:0005887] [evidence IDA] [pmid 9483795]; go_function: xenobiotic-transporting ATPase activity [goid GO:0008559] [evidence IMP] [pmid 9483795]; go_process: drug transport [goid GO:0015893] [evidence IMP] [pmid 9483795]; go_process: response to drug [goid GO:0042493] [evidence IMP] [pmid 9483795] --- --- --- --- --- S0006402 // span:7-29,44-66,78-100,104-126,133-155,159-181,221-243,258-280,301-323,343-365,370-392,402-421,442-464,507-529 // numtm:14 S0006402 // SGE1 SGDID:S0006402, Chr XVI from 934030-935661, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020785 // cdna:GeneFinder chromosome:SGD1:XVI:934030:935661:1 // ensembl // 11 // --- /// YPR198W // cdna:known chromosome:SGD1:XVI:934030:935661:1 gene:YPR198W // ensembl // 11 // --- --- No cerevisiae_gene 1.59749983142941 2.18840609281958 -1.13453446021677 3.23167585889953 1.02102580202055 Max fold change at or above threshold 4 3.23167585889953 Max fold change at or above threshold -0.804216957888536 0.306746605126783 1.28203165584581 -0.784561303084056 68.5136127471924 39.3971059845254 0.575025960605762 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775172_at YLR051C.S1 Protein required for cell viability 3.23131645643799 108.725978851318 329.874877929688 --- --- 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 302.055633544922 123.974380493164 93.4775772094727 357.694122314453 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR051C /GEN=RPS0B /DB_XREF=GI:6323080 /SEG=NC_001144:-246325,246978 /DEF=Protein required for cell viability /NOTE=Ylr051cp; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14690591]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004041 // YLR051C SGDID:S0004041, Chr XII from 246978-246325, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017859 // cdna:Genscan chromosome:SGD1:XII:246325:246978:-1 // ensembl // 11 // --- /// GENEFINDER00000024905 // cdna:GeneFinder chromosome:SGD1:XII:246325:246978:-1 // ensembl // 11 // --- /// YLR051C // cdna:known chromosome:SGD1:XII:246325:246978:-1 gene:YLR051C // ensembl // 11 // --- --- No cerevisiae_gene 1.14015809033136 -2.4364359179966 1.03854680640335 -3.23131645643799 1.18419947384049 Max fold change at or above threshold 4 3.23131645643799 Max fold change at or above threshold 0.635203815353532 -0.731693785472174 -0.965777983145781 1.06226795326442 219.300428390503 130.281341443707 0.594077003861198 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770678_at SPAC2E1P3.01.S1 --- 3.23099919033552 --- --- --- --- 5.28941440582275 5.02415609359741 3.45904111862183 1.63708317279816 0.5 0.533936023712158 0.303710997104645 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2E1P3.01 /DEF=zinc binding dehydrogenase --- --- --- --- --- --- SPAC2E1P3.01 // |||zinc binding dehydrogenase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.21396540440686 -1.05279659056839 -2.18307002333977 -1.52915626742541 -3.23099919033552 Max fold change at or above threshold 3 3.23099919033552 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769388_at YLR401C.S1 Dihydrouridine synthase, member of a widespread family of conserved proteins including Smm1p, Dus1p, and Dus4p; contains a consensus oleate response element (ORE) in its promoter region 3.22926768328705 477.503265380859 324.099868774414 DUS3 6400 // tRNA modification // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 17150 // tRNA dihydrouridine synthase activity // inferred from sequence similarity 300.959045410156 376.663635253906 578.342895507813 347.240692138672 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR401C /GEN=DUS3 /DB_XREF=GI:6323433 /SEG=NC_001144:-922618,924447 /DEF=Dihydrouridine synthase, member of a widespread family of conserved proteins including Smm1p, Dus1p, and Dus4p; contains a consensus oleate response element (ORE) in its promoter region /NOTE=Dus3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: tRNA dihydrouridine synthase activity [goid GO:0017150] [evidence ISS] [pmid 12003496]; go_process: tRNA modification [goid GO:0006400] [evidence ISS] [pmid 12003496] --- --- --- --- scop // a.140.4.Recombination endonuclease VII, C-terminal and dimerizat // All alpha proteins; LEM/SAP HeH motif; Recombination endonuclease VII, C-terminal and dimerization domains; Recombination endonuclease VII, C-terminal and dimerization domains // 1.79999995231628 /// scop // a.140.4.Recombination endonuclease VII, C-terminal and dimerizat // All alpha proteins; LEM/SAP HeH motif; Recombination endonuclease VII, C-terminal and dimerization domains; Recombination endonuclease VII, C-terminal and dimerization domains // 0.449999988079071 /// scop // a.4.1.DNA-binding domain of rap1 // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; DNA-binding domain of rap1 // 0.140000000596046 --- S0004393 // DUS3 SGDID:S0004393, Chr XII from 924447-922618, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000024543 // cdna:GeneFinder chromosome:SGD1:XII:921911:924447:-1 // ensembl // 11 // --- /// GENSCAN00000018121 // cdna:Genscan chromosome:SGD1:XII:922618:924447:-1 // ensembl // 11 // --- /// YLR401C // cdna:known chromosome:SGD1:XII:922618:924447:-1 gene:YLR401C // ensembl // 11 // --- --- No cerevisiae_gene 3.22926768328705 1.25154449084784 1.40857078597817 1.92166643378214 1.15378054733474 Max fold change at or above threshold 4 3.22926768328705 Max fold change at or above threshold -0.81574699281192 -0.197215023910205 1.45057238487118 -0.437610368149053 400.801567077637 122.393980667116 0.305373009291174 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771359_at YHR085W.S1 Protein of unknown function, essential for viability, may be involved in rRNA processing 3.22877298368587 138.581066131592 431.913650512695 IPI1 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 6364 // rRNA processing // inferred from mutant phenotype /// 6365 // 35S primary transcript processing // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5654 // nucleoplasm // inferred from direct assay --- 391.462982177734 121.242027282715 155.920104980469 472.364318847656 0.000244141003349796 0.0239257998764515 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR085W /GEN=STE12 /DB_XREF=GI:6321877 /SEG=NC_001140:+276765,277769 /DEF=Protein of unknown function, essential for viability, may be involved in rRNA processing /NOTE=Yhr085wp --- --- --- --- --- --- S0001127 // IPI1 SGDID:S0001127, Chr VIII from 276765-277769, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020222 // cdna:GeneFinder chromosome:SGD1:VIII:277032:277769:1 // ensembl // 11 // --- /// GENSCAN00000016628 // cdna:Genscan chromosome:SGD1:VIII:277182:277769:1 // ensembl // 11 // --- /// YHR085W // cdna:known chromosome:SGD1:VIII:276765:277769:1 gene:YHR085W // ensembl // 11 // --- --- No cerevisiae_gene 1.00310381034935 -3.22877298368587 -1.14735738443004 -2.51066392128694 1.20666407898868 Max fold change at or above threshold 4 3.22877298368587 Max fold change at or above threshold 0.613516417429435 -0.947317913186107 -0.747012447566553 1.08081394332322 285.247358322144 173.125968332881 0.606932766533674 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1769446_at YHL010C.S1 Hypothetical protein 3.22624062900179 286.379058837891 135.513465881348 --- --- --- 8139 // nuclear localization sequence binding // inferred from direct assay 113.150512695313 207.707336425781 365.05078125 157.876419067383 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL010C /GEN=PRS3 /DB_XREF=GI:6321777 /SEG=NC_001140:-81959,83716 /DEF=Hypothetical ORF /NOTE=Yhl010cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: nuclear localization sequence binding [goid GO:0008139] [evidence IDA] [pmid 9497340]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 8.10000038146973 --- S0001002 // YHL010C SGDID:S0001002, Chr VIII from 83716-81959, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016546 // cdna:Genscan chromosome:SGD1:VIII:81959:82978:-1 // ensembl // 11 // --- /// GENEFINDER00000020158 // cdna:GeneFinder chromosome:SGD1:VIII:81959:83158:-1 // ensembl // 11 // --- /// YHL010C // cdna:known chromosome:SGD1:VIII:81959:83716:-1 gene:YHL010C // ensembl // 11 // --- --- No cerevisiae_gene -1.47513013808721 1.8356729587703 2.11046625469696 3.22624062900179 1.39527798245605 Max fold change at or above threshold 4 3.22624062900179 Max fold change at or above threshold -0.891029082347376 -0.0295102518516918 1.40406519223806 -0.483525858038992 210.946262359619 109.755957018449 0.520302923553763 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777910_at YML109W.S1 Protein that interacts with silencing proteins at the telomere, involved in transcriptional silencing; paralog of Zds1p 3.22555244149555 156.117744445801 438.931121826172 ZDS2 183 // chromatin silencing at ribosomal DNA // inferred from mutant phenotype /// 7569 // cell aging // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype 5634 // nucleus // inferred from physical interaction --- 430.618682861328 133.502304077148 178.733184814453 447.243560791016 0.000244141003349796 0.00195312988944352 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML109W /GEN=ZDS2 /DB_XREF=GI:6323527 /SEG=NC_001145:+51640,54468 /DEF=Protein that interacts with silencing proteins at the telomere, involved in transcriptional silencing; paralog of Zds1p /NOTE=Zds2p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 10662670]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell aging [goid GO:0007569] [evidence IMP] [pmid 10662670]; go_process: chromatin silencing at ribosomal DNA [goid GO:0000183] [evidence IMP] [pmid 10662670]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IMP] [pmid 8816439] --- --- --- --- --- --- S0004577 // ZDS2 SGDID:S0004577, Chr XIII from 51640-54468, Verified ORF // sgd // 11 // --- /// GENSCAN00000018626 // cdna:Genscan chromosome:SGD1:XIII:51649:54468:1 // ensembl // 11 // --- /// GENEFINDER00000022086 // cdna:GeneFinder chromosome:SGD1:XIII:51658:54468:1 // ensembl // 11 // --- /// YML109W // cdna:known chromosome:SGD1:XIII:51640:54468:1 gene:YML109W // ensembl // 11 // --- --- No cerevisiae_gene -1.49183522153053 -3.22555244149555 -1.28065349617039 -2.40928221196507 1.03860695922253 Max fold change at or above threshold 4 3.22555244149555 Max fold change at or above threshold 0.809264207557529 -0.997317604394034 -0.722296460110635 0.91034985694714 297.524433135986 164.463284650928 0.552772365339686 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777055_at SPCC18.08.S1 --- 3.22528831619215 --- --- --- --- 10.1638507843018 22.7695293426514 32.7813491821289 14.8852796554565 0.24609400331974 0.129638999700546 0.030273400247097 0.0461426004767418 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18.08 /DEF=lysine-tRNA ligase (predicted) --- --- --- --- --- --- SPCC18.08 // |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.11521772786855 2.24024632256696 1.44749487922669 3.22528831619215 1.46453150202157 Max fold change at or above threshold 4 3.22528831619215 Max fold change at or above threshold APAPPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1770873_at SPBC725.02.S1 --- 3.22472791137031 --- --- --- --- 6.90970277786255 7.78537130355835 5.17453002929688 4.30381631851196 0.194580003619194 0.194580003619194 0.0561522990465164 0.149657994508743 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC725.02 /GEN=mpr1 /DEF=speedy --- --- --- --- --- --- SPBC725.02 // |mpr1|spy1|speedy|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.22472791137031 1.12673027391298 -1.52708415357028 -1.33532953499962 -1.60548273125456 Max fold change at or above threshold 4 3.22472791137031 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1770261_at YPL165C.S1 Protein of unknown function; deletion heterozygote is sensitive to compounds that target ergosterol biosynthesis, may be involved in compound availability 3.22397529918291 55.4094533920288 81.3589744567871 SET6 --- --- --- 87.4010314941406 27.1097087860107 83.7091979980469 75.3169174194336 0.00292969006113708 0.00415039015933871 0.00292969006113708 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL165C /GEN=SET6 /DB_XREF=GI:6325092 /SEG=NC_001148:-237955,239076 /DEF=Set6p /NOTE=go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006086 // SET6 SGDID:S0006086, Chr XVI from 239076-237955, reverse complement, Verified ORF // sgd // 11 // --- /// YPL165C // cdna:known chromosome:SGD1:XVI:237955:239076:-1 gene:YPL165C // ensembl // 11 // --- --- No cerevisiae_gene -2.55043121546703 -3.22397529918291 1.3881188684048 -1.04410308047844 -1.16044355622538 Max fold change at or above threshold 4 3.22397529918291 Max fold change at or above threshold 0.679729819486425 -1.47530005082279 0.547770341688846 0.247799889647515 68.384213924408 27.9770241418877 0.409115240731048 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774841_at SPAC11D3.06.S1 --- 3.22186638658223 --- --- --- --- 8.53489589691162 2.64905333518982 7.45456504821777 5.34111499786377 0.0952147990465164 0.432372987270355 0.014160200022161 0.0805663987994194 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11D3.06 /DEF=MatE family transporter --- --- --- --- --- --- SPAC11D3.06 // |||MatE family transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.50059637453578 -3.22186638658223 1.07040392371093 -1.14492205000641 -1.59796145567456 Max fold change at or above threshold 4 3.22186638658223 Max fold change at or above threshold APAPPA No 4 0 AAPA 3 1 0 No No x = 1
AFFX-r2-Sc-18SrRNA-3_at AFFX-r2-Sc-18SrRNA-3 --- 3.22174100386438 209.875465393066 364.112167358398 --- --- --- --- 447.572906494141 280.828247070313 138.92268371582 280.651428222656 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=Z75578 SGD:YLR154C 18S ribosomal RNA corresponds to 1-1799 in Z75578 (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- D83552 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:465250-465418(-) /// L10741 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 18S ribosomal RNA, partial. // gb // 0 // chr12:465251-465539(-) /// D23705 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:465250-465418(-) /// L22158 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA (18S rRNA) fragment. // gb // 0 // chr12:465277-465545(-) /// L19742 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA fragment. // gb // 0 // chr12:465277-465547(-) /// D83552 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:456113-456281(-) /// L10741 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 18S ribosomal RNA, partial. // gb // 0 // chr12:456114-456402(-) /// D23705 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:456113-456281(-) /// L22158 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA (18S rRNA) fragment. // gb // 0 // chr12:456140-456408(-) /// L19742 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA fragment. // gb // 0 // chr12:456140-456410(-) --- AFFX_control cerevisiae_gene -2.20968627830601 -1.59376028288949 -1.31324767505395 -3.22174100386438 -1.59476439984142 Max fold change at or above threshold 4 3.22174100386438 Max fold change at or above threshold 1.27228937460302 -0.0488506212725452 -1.17318717293593 -0.0502515803945374 286.993816375732 126.212710193004 0.439775016015557 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 No No 3 < x
1771506_at SPAC4H3.06.S1 --- 3.22158430003799 --- --- --- --- 0.325695753097534 0.203055694699287 0.194183245301247 1.04925632476807 0.981445014476776 0.991943001747131 0.888427972793579 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4H3.06 /DEF=sequence orphan --- --- --- --- --- --- SPAC4H3.06 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.03353752048765 -1.60397251394436 -1.24483231411611 -1.67725980988867 3.22158430003799 Max fold change at or above threshold 0 3.22158430003799 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771136_at SPAC1952.06c.S1 --- 3.2209298430313 --- --- --- --- 6.4415717124939 11.051947593689 9.28187084197998 1.99991059303284 0.125244140625 0.0375977009534836 0.0461426004767418 0.149657994508743 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1952.06c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC1952.06c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.39763515606156 1.71572220056992 1.00946135359841 1.44093262580266 -3.2209298430313 Max fold change at or above threshold 3 3.2209298430313 Max fold change at or above threshold AMPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1780088_at YLR162W-A.S1 Identified by fungal homology and RT-PCR 3.22037389259268 9.02885484695435 4.60785341262817 --- --- --- --- 7.03208351135254 14.9275941848755 3.1301155090332 2.18362331390381 0.274170011281967 0.030273400247097 0.334473013877869 0.432372987270355 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR162W-A /GEN=ASP3-4 /DB_XREF=GI:33438840 /SEG=NC_001144:+490407,490595 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ylr162w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028567 // YLR162W-A SGDID:S0028567, Chr XII from 490407-490595, Uncharacterized ORF // sgd // 11 // --- /// YLR162W-A // cdna:known chromosome:SGD1:XII:490407:490595:1 gene:YLR162W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.13601808270884 2.12278397444747 2.02379804151906 -2.2465891405792 -3.22037389259268 Max fold change at or above threshold 3 3.22037389259268 Max fold change at or above threshold 0.0368555016679607 1.39835762492187 -0.635999990484284 -0.799213136105546 6.81835412979126 5.79911741500127 0.85051572631925 AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1770592_at YJL089W.S1 C6 zinc cluster transcriptional activator that binds to the carbon source-responsive element (CSRE) of gluconeogenic genes; involved in the positive regulation of gluconeogenesis; regulated by Snf1p protein kinase; localized to the nucleus 3.22016144149303 675.873168945313 232.180694580078 SIP4 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from physical interaction /// 45722 // positive regulation of gluconeogenesis // inferred from mutant phenotype /// 45722 // positive regulation of gluconeogenesis // inferred from physical interaction 5634 // nucleus // inferred from direct assay 3704 // specific RNA polymerase II transcription factor activity // inferred from direct assay /// 3704 // specific RNA polymerase II transcription factor activity // inferred from mutant phenotype 211.887649536133 682.312438964844 669.433898925781 252.473739624023 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL089W /GEN=SIP4 /DB_XREF=GI:6322372 /SEG=NC_001142:+265842,268331 /DEF=Possibly involved in Snf1p regulated transcriptional activation /NOTE=Sip4p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9843506]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IDA,IMP] [pmid 9843506]; go_process: positive regulation of gluconeogenesis [goid GO:0045722] [evidence IMP,IPI] [pmid 9843506]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP,IPI] [pmid 9843506] --- --- --- --- --- --- S0003625 // SIP4 SGDID:S0003625, Chr X from 265842-268331, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024514 // cdna:GeneFinder chromosome:SGD1:X:266850:268331:1 // ensembl // 11 // --- /// YJL089W // cdna:known chromosome:SGD1:X:265842:268331:1 gene:YJL089W // ensembl // 11 // --- --- No cerevisiae_gene 1.05016156607653 3.22016144149303 -1.63416184102429 3.15938140043233 1.19154533157899 Max fold change at or above threshold 4 3.22016144149303 Max fold change at or above threshold -0.943074841467784 0.889117686871715 0.838958840302115 -0.785001685706047 454.026931762695 256.755107420427 0.565506337748757 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778331_at YDL211C.S1 Hypothetical protein 3.21963978983861 62.8331165313721 217.626525878906 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 196.825500488281 64.5334625244141 61.1327705383301 238.427551269531 0.000244141003349796 0.0107421996071935 0.00585938012227416 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL211C /GEN=SHR3 /DB_XREF=GI:6319990 /SEG=NC_001136:-79295,80413 /DEF=Hypothetical ORF /NOTE=Ydl211cp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002370 // span:222-244 // numtm:1 S0002370 // YDL211C SGDID:S0002370, Chr IV from 80413-79295, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024946 // cdna:Genscan chromosome:SGD1:IV:79295:80413:-1 // ensembl // 11 // --- /// YDL211C // cdna:known chromosome:SGD1:IV:79295:80413:-1 gene:YDL211C // ensembl // 11 // --- --- No cerevisiae_gene -1.03310526109239 -3.04997582322224 -1.70746135970603 -3.21963978983861 1.21136514668091 Max fold change at or above threshold 4 3.21963978983861 Max fold change at or above threshold 0.622066432408288 -0.832009870492759 -0.8693882774365 1.07933171552097 140.229821205139 90.9801209881006 0.648792961484332 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1771973_at YIR012W.S1 Essential protein involved in a late step of 60S ribosomal subunit assembly or modification; contains multiple WD repeats; interacts with Qsr1p in a two-hybrid assay 3.21958498041324 207.323791503906 666.724151611328 SQT1 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 27 // ribosomal large subunit assembly and maintenance // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay /// 5829 // cytosol // inferred from direct assay /// 5830 // cytosolic ribosome (sensu Eukaryota) // inferred from direct assay --- 661.65576171875 205.509643554688 209.137939453125 671.792541503906 0.000244141003349796 0.00195312988944352 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR012W /GEN=SQT1 /DB_XREF=GI:6322202 /SEG=NC_001141:+378483,379778 /DEF=Involved in a late step of 60S ribosomal subunit assembly or modification; contains multiple WD repeats; interacts with Qsr1p /NOTE=Sqt1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 9271392]; go_component: cytosolic ribosome (sensu Eukarya) [goid GO:0005830] [evidence IDA] [pmid 9271392]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IGI,IMP] [pmid 9271392] --- --- --- --- --- --- S0001451 // SQT1 SGDID:S0001451, Chr IX from 378483-379778, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019078 // cdna:GeneFinder chromosome:SGD1:IX:378483:379778:1 // ensembl // 11 // --- /// GENSCAN00000016486 // cdna:Genscan chromosome:SGD1:IX:378639:379778:1 // ensembl // 11 // --- /// YIR012W // cdna:known chromosome:SGD1:IX:378483:379778:1 gene:YIR012W // ensembl // 11 // --- --- No cerevisiae_gene 1.0149785509394 -3.21958498041324 -1.2851600598398 -3.16372898886216 1.01532032269896 Max fold change at or above threshold 4 3.21958498041324 Max fold change at or above threshold 0.846800075707757 -0.872745350690049 -0.859067672925548 0.88501294790784 437.023971557617 265.27133925134 0.606994939673159 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779003_at YFR028C.S1 Protein phosphatase required for mitotic exit; located in the nucleolus until liberated by the FEAR and Mitotic Exit Network in anaphase, enabling it to act on key substrates to effect a decrease in CDK/B-cyclin activity and mitotic exit 3.21847561765562 320.748901367188 966.221130371094 CDC14 6470 // protein amino acid dephosphorylation // inferred from direct assay /// 7096 // regulation of exit from mitosis // inferred from genetic interaction /// 7096 // regulation of exit from mitosis // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay /// 5816 // spindle pole body // inferred from direct assay /// 30869 // RENT complex // inferred from direct assay 4721 // phosphoprotein phosphatase activity // inferred from direct assay 924.944396972656 354.111938476563 287.385864257813 1007.49786376953 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR028C /GEN=CDC14 /DB_XREF=GI:14318551 /SEG=NC_001138:-208401,210056 /DEF=Protein phosphatase required for mitotic exit; located in the nucleolus until liberated by the FEAR and Mitotic Exit Network in anaphase, enabling it to act on key substrates to effect a decrease in CDK/B-cyclin activity and mitotic exit /NOTE=Cdc14p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 12062061]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 12062061]; go_function: phosphoprotein phosphatase activity [goid GO:0004721] [evidence IDA] [pmid 9295359]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence IDA] [pmid 9295359]; go_process: regulation of exit from mitosis [goid GO:0007096] [evidence IGI,IPI] [pmid 10219244] --- --- --- --- --- --- S0001924 // CDC14 SGDID:S0001924, Chr VI from 210056-208401, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018514 // cdna:GeneFinder chromosome:SGD1:VI:208401:209897:-1 // ensembl // 11 // --- /// GENSCAN00000023269 // cdna:Genscan chromosome:SGD1:VI:208401:209897:-1 // ensembl // 11 // --- /// YFR028C // cdna:known chromosome:SGD1:VI:208401:210056:-1 gene:YFR028C // ensembl // 11 // --- --- No cerevisiae_gene 1.02272386385135 -2.61201133447207 -1.27428884955455 -3.21847561765562 1.08925235621414 Max fold change at or above threshold 4 3.21847561765562 Max fold change at or above threshold 0.750208893364859 -0.771302257928393 -0.949155609633943 0.970248974197477 643.485015869141 375.174679469749 0.583035611113661 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777130_at YIL131C.S1 Transcription factor of the forkhead family that regulates the cell cycle and pseudohyphal growth; also involved in chromatin silencing at HML and HMR 3.21716547097443 56.9575595855713 165.61149597168 FKH1 74 // regulation of cell cycle // inferred from mutant phenotype /// 74 // regulation of cell cycle // inferred from genetic interaction /// 7124 // pseudohyphal growth // inferred from genetic interaction /// 30466 // chromatin silencing at silent mating-type cassette // inferred from mutant phenotype /// 30466 // chromatin silencing at silent mating-type cassette // inferred from genetic interaction 5634 // nucleus // inferred from direct assay 3700 // transcription factor activity // inferred from sequence similarity 173.180023193359 60.0851173400879 53.8300018310547 158.04296875 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL131C /GEN=FKH1 /DB_XREF=GI:6322060 /SEG=NC_001141:-100781,102235 /DEF=Transcription factor of the forkhead family that regulates the cell cycle and pseudohyphal growth; also involved in chromatin silencing at HML and HMR /NOTE=Fkh1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10747051]; go_function: transcription factor activity [goid GO:0003700] [evidence ISS] [pmid 10747051]; go_process: chromatin silencing at silent mating-type cassette (sensu Fungi) [goid GO:0030466] [evidence IGI,IMP] [pmid 10747051]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IGI] [pmid 10894548]; go_process: regulation of cell cycle [goid GO:0000074] [evidence IGI,IMP] [pmid 10894548] --- --- --- --- scop // a.4.5.Forkhead DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Forkhead DNA-binding domain // 7.99999891984574E-40 --- S0001393 // FKH1 SGDID:S0001393, Chr IX from 102235-100781, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016377 // cdna:Genscan chromosome:SGD1:IX:100781:102235:-1 // ensembl // 11 // --- /// GENEFINDER00000019031 // cdna:GeneFinder chromosome:SGD1:IX:100781:102235:-1 // ensembl // 11 // --- /// YIL131C // cdna:known chromosome:SGD1:IX:100781:102235:-1 gene:YIL131C // ensembl // 11 // --- --- No cerevisiae_gene -1.49765745375328 -2.88224490289572 -2.001990078887 -3.21716547097443 -1.09577809479967 Max fold change at or above threshold 4 3.21716547097443 Max fold change at or above threshold 0.981117516418308 -0.811571796541142 -0.910722847066079 0.741177127188913 111.284527778625 63.0867295496783 0.566895783348918 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775721_at SPBC216.03.S1 --- 3.21584544170525 --- --- --- --- 1.58278071880341 2.19400024414063 0.545598387718201 0.92361456155777 0.780517995357513 0.753906011581421 0.850341975688934 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC216.03 /DEF=hypothetical protein --- --- --- --- --- --- SPBC216.03 // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -3.21584544170525 1.38616816472171 -1.3718367012092 -2.90099962615891 -1.7136809927876 Max fold change at or above threshold 0 3.21584544170525 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776815_at SPCC1827.03c.S1 --- 3.21146899168016 --- --- --- --- 2.90945601463318 4.95856237411499 0.905957996845245 2.54897999763489 0.398925989866257 0.567627012729645 0.466064006090164 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1827.03c /DEF=long-chain fatty acid transporter (predicted) --- --- --- --- --- --- SPCC1827.03c // |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -2.22128250576224 1.70429191889335 -2.70682899021356 -3.21146899168016 -1.14141971193684 Max fold change at or above threshold 3 3.21146899168016 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774178_at SPBC23G7.16.S1 --- 3.21090100236604 --- --- --- --- 6.18099308013916 7.9373779296875 5.90193176269531 1.92500269412994 0.334473013877869 0.0676269978284836 0.0676269978284836 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23G7.16 /GEN=ctr6 /DEF=copper transporter (PMID 12244050) --- --- --- --- --- --- SPBC23G7.16 // |ctr6||copper transporter |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.45757279412567 1.28415900596815 -2.71310021604366 -1.04728304708769 -3.21090100236604 Max fold change at or above threshold 3 3.21090100236604 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771262_at YDL043C.S1 Subunit of the SF3a splicing factor complex, required for spliceosome assembly 3.20954342618686 145.206089019775 419.911880493164 PRP11 245 // spliceosome assembly // inferred from direct assay 5686 // snRNP U2 // inferred from direct assay 3723 // RNA binding // inferred from direct assay 395.986602783203 123.377861022949 167.034317016602 443.837158203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL043C /GEN=PRP11 /DB_XREF=GI:6320161 /SEG=NC_001136:-375677,376477 /DEF=Subunit of the SF3a splicing factor complex, required for spliceosome assembly /NOTE=Prp11p; go_component: snRNP U2 [goid GO:0005686] [evidence IDA] [pmid 11804584]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 8065365]; go_process: spliceosome assembly [goid GO:0000245] [evidence IDA] [pmid 8969185] --- --- --- --- --- --- S0002201 // PRP11 SGDID:S0002201, Chr IV from 376477-375677, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025069 // cdna:Genscan chromosome:SGD1:IV:375677:376477:-1 // ensembl // 11 // --- /// YDL043C // cdna:known chromosome:SGD1:IV:375677:376477:-1 gene:YDL043C // ensembl // 11 // --- --- No cerevisiae_gene 1.04101531718277 -3.20954342618686 1.52734779632897 -2.37069010641595 1.12083882405011 Max fold change at or above threshold 4 3.20954342618686 Max fold change at or above threshold 0.705435955800552 -0.989988947311723 -0.71847805519823 1.0030310467094 282.55898475647 160.790808994152 0.569052189696721 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774762_at YER129W.S1 Upstream kinase for the SNF1 complex; partially redundant function with Elm1p and Tos3p; members of this family of kinases have functional orthology with LKB1, a mammalian kinase associated with Peutz-Jeghers cancer-susceptibility syndrome 3.20947033370552 122.718181610107 289.553833007813 --- 6006 // glucose metabolism // inferred from genetic interaction /// 6006 // glucose metabolism // inferred from mutant phenotype /// 6261 // DNA-dependent DNA replication // inferred from genetic interaction /// 6468 // protein amino acid phosphorylation // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 4672 // protein kinase activity // inferred from direct assay 264.720062255859 120.263572692871 125.172790527344 314.387603759766 0.00122069998178631 0.014160200022161 0.00292969006113708 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER129W /GEN=PAK1 /DB_XREF=GI:6320976 /SEG=NC_001137:+417277,420705 /DEF=Upstream kinase for the SNF1 complex, has partially redundant function with Elm1p and Tos3p, closest mammalian homolog is calcium-calmodulin-dependent protein kinase kinase beta /NOTE=Pak1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein kinase activity [goid GO:0004672] [evidence IDA] [pmid 9341678]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence IGI] [pmid 9341678]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 9341678] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 5.0E-57 /// hanks // 2.2.11 // CaMK Group; CaMK II KIN1/SNF1/Nim1; YKL453 // 8.0E-59 --- S0000931 // span:356-378 // numtm:1 S0000931 // PAK1 SGDID:S0000931, Chr V from 417277-420705, Verified ORF // sgd // 10 // --- /// GENSCAN00000016910 // cdna:Genscan chromosome:SGD1:V:417277:420705:1 // ensembl // 10 // --- /// GENEFINDER00000019592 // cdna:GeneFinder chromosome:SGD1:V:418534:420705:1 // ensembl // 10 // --- /// YER129W // cdna:known chromosome:SGD1:V:417277:420705:1 gene:YER129W // ensembl // 10 // --- --- No cerevisiae_gene -3.20947033370552 -2.20116579217134 -1.19421266446699 -2.11483710749447 1.1876228838897 Max fold change at or above threshold 4 3.20947033370552 Max fold change at or above threshold 0.595039387190946 -0.872207991011665 -0.822344969845595 1.09951357366631 206.13600730896 98.4540791887109 0.477617086282002 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1774508_at SPBC36.09.S1 --- 3.20930840524147 --- --- --- --- 0.690741896629334 1.17653226852417 0.456864923238754 0.215230762958527 0.828612983226776 0.780517995357513 0.976073980331421 0.994140982627869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC36.09 /GEN=sap61 /DEF=localization spliceosome complex --- --- --- --- --- --- SPBC36.09 // |sap61||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.01019634657501 1.70328783336494 -2.75186219324732 -1.51191711487195 -3.20930840524147 Max fold change at or above threshold 0 3.20930840524147 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777924_at YOR072W-B.S1 Identified by expression profiling and mass spectrometry 3.20838572971007 6.93164420127869 3.70739686489105 --- --- --- --- 5.6528844833374 7.34043836593628 6.52285003662109 1.7619092464447 0.171387001872063 0.0805663987994194 0.0461426004767418 0.5 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR072W-B /GEN=GYP1 /DB_XREF=GI:33438883 /SEG=NC_001147:+464470,464631 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Yor072w-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028516 // YOR072W-B SGDID:S0028516, Chr XV from 464470-464631, Uncharacterized ORF // sgd // 11 // --- /// YOR072W-B // cdna:known chromosome:SGD1:XV:464470:464631:1 gene:YOR072W-B // ensembl // 11 // --- --- No cerevisiae_gene 1.30543988430832 1.29852969533928 -2.18498230812359 1.15389763506543 -3.20838572971007 Max fold change at or above threshold 3 3.20838572971007 Max fold change at or above threshold 0.13497570681416 0.818249281890934 0.487215999651721 -1.44044098835682 5.31952053308487 2.46980703506536 0.464291287100848 AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1773225_at YOR292C.S1 Hypothetical protein 3.20806323666412 535.095489501953 201.003433227539 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 183.543670654297 481.371276855469 588.819702148438 218.463195800781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR292C /GEN=SNF2 /DB_XREF=GI:6324866 /SEG=NC_001147:-865650,866579 /DEF=Hypothetical ORF /NOTE=Yor292cp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005818 // span:53-75,79-101,180-201,221-243,259-281 // numtm:5 S0005818 // YOR292C SGDID:S0005818, Chr XV from 866579-865650, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022549 // cdna:GeneFinder chromosome:SGD1:XV:865650:866522:-1 // ensembl // 11 // --- /// YOR292C // cdna:known chromosome:SGD1:XV:865650:866579:-1 gene:YOR292C // ensembl // 11 // --- --- No cerevisiae_gene 2.87103413680494 2.62265255532634 -1.10088110992357 3.20806323666412 1.19025186225165 Max fold change at or above threshold 4 3.20806323666412 Max fold change at or above threshold -0.930315049810138 0.571391228518533 1.11316765051344 -0.754243829221839 368.049461364746 198.326137740225 0.538857296529714 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771960_at YDL109C.S1 Hypothetical protein 3.20749871429859 67.1467342376709 176.207496643066 --- 6629 // lipid metabolism // inferred from mutant phenotype /// 6629 // lipid metabolism // inferred from sequence similarity --- 16298 // lipase activity // non-traceable author statement 176.368270874023 54.9862327575684 79.3072357177734 176.046722412109 0.000244140625 0.00292969006113708 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL109C /GEN=RRP42 /DB_XREF=GI:6320094 /SEG=NC_001136:-265258,267201 /DEF=Hypothetical ORF /NOTE=Ydl109cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: lipase activity [goid GO:0016298] [evidence NAS] [pmid 10341423]; go_process: lipid metabolism [goid GO:0006629] [evidence ISS,IMP] [pmid 10341423] --- --- --- --- --- --- S0002267 // YDL109C SGDID:S0002267, Chr IV from 267201-265258, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023590 // cdna:GeneFinder chromosome:SGD1:IV:265258:267201:-1 // ensembl // 11 // --- /// GENSCAN00000025017 // cdna:Genscan chromosome:SGD1:IV:265258:267201:-1 // ensembl // 11 // --- /// YDL109C // cdna:known chromosome:SGD1:IV:265258:267201:-1 gene:YDL109C // ensembl // 11 // --- --- No cerevisiae_gene -1.28722415820162 -3.20749871429859 1.30815728135668 -2.22386102954913 -1.0018264950208 Max fold change at or above threshold 4 3.20749871429859 Max fold change at or above threshold 0.857975436754338 -1.0462228991801 -0.664683636174426 0.85293109860019 121.677115440369 63.7444303074079 0.523881833298783 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779361_at SPBC26H8.12.S1 --- 3.20661912443769 --- --- --- --- 9.36712741851807 30.0368099212646 12.1240329742432 7.04849910736084 0.432372987270355 0.194580003619194 0.149657994508743 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC26H8.12 /DEF=cytochrome c heme lyase (predicted) --- --- --- --- --- --- SPBC26H8.12 // |||cytochrome c heme lyase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.37571318022179 3.20661912443769 -1.51739326129452 1.29431707636163 -1.32895348014386 Max fold change at or above threshold 4 3.20661912443769 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770614_at SPAC22A12.04c.S1 --- 3.20619030229132 --- --- --- --- 20.0738754272461 10.6688251495361 10.1655569076538 6.26097440719604 0.194580003619194 0.194580003619194 0.219482004642487 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22A12.04c /GEN=rps2201 /DEF=40S ribosomal protein S15a --- --- --- --- --- --- AB015353 // Schizosaccharomyces pombe mRNA for ribosomal protein S22 homolog, complete cds. // gb // 11 // --- /// SPAC22A12.04c // |rps2201|rps22-1, rps15a-1|40S ribosomal protein S15a|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.69093298055261 -1.88154507604044 -2.27882394017392 -1.97469510127204 -3.20619030229132 Max fold change at or above threshold 4 3.20619030229132 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772235_at SPAC23H3.10.S1 --- 3.20532200755711 --- --- --- --- 9.01827716827393 7.34197378158569 2.81353235244751 3.34769344329834 0.014160200022161 0.194580003619194 0.398925989866257 0.274170011281967 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H3.10 /DEF=zinc finger protein --- --- --- --- --- --- D89227 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1349. // gb // 11 // --- /// SPAC23H3.10 // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.93406168848235 -1.22831781160708 -1.72029454226864 -3.20532200755711 -2.69387783589545 Max fold change at or above threshold 4 3.20532200755711 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1776680_at YGR236C.S1 Protein required for survival at high temperature during stationary phase; not required for growth on nonfermentable carbon sources 3.20387101353669 3965.66418457031 1776.86096191406 SPG1 --- 5739 // mitochondrion // inferred from direct assay --- 1922.92822265625 4884.490234375 3046.83813476563 1630.79370117188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR236C /GEN=YHB1 /DB_XREF=GI:6321675 /SEG=NC_001139:-962431,962820 /DEF=Protein required for survival at high temperature during stationary phase /NOTE=Ygr236cp --- --- --- --- --- S0003468 // span:20-37 // numtm:1 S0003468 // SPG1 SGDID:S0003468, Chr VII from 962821-962432, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000021562 // cdna:GeneFinder chromosome:SGD1:VII:962432:962821:-1 // ensembl // 11 // --- /// YGR236C // cdna:known chromosome:SGD1:VII:962432:962821:-1 gene:YGR236C // ensembl // 11 // --- --- No cerevisiae_gene -3.20387101353669 2.54013133554604 1.24960089199085 1.58447834862856 -1.17913640534327 Max fold change at or above threshold 4 3.20387101353669 Max fold change at or above threshold -0.643178123039482 1.36540871638629 0.119078635127447 -0.841309228474253 2871.26257324219 1474.4505707134 0.513519935255685 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774256_at SPAC6F6.16c.S1 --- 3.20291087387491 --- --- --- --- 4.86372041702271 5.18024682998657 15.5780630111694 4.25622987747192 0.366210997104645 0.533936023712158 0.466064006090164 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F6.16c /DEF=sequence orphan --- --- --- --- --- --- SPAC6F6.16c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.12219367421581 1.06507907236116 1.7146106735114 3.20291087387491 -1.14272972960559 Max fold change at or above threshold 4 3.20291087387491 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774640_at SPBC16G5.13.S1 --- 3.201321340627 --- --- --- --- 1.30418753623962 0.793403625488281 1.54361915588379 0.407390385866165 0.780517995357513 0.870360970497131 0.725830018520355 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16G5.13 /DEF=dubious --- --- --- --- --- --- SPBC16G5.13 // |||dubious|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -2.28723370782735 -1.6437882237266 2.86417341799388 1.18358680250428 -3.201321340627 Max fold change at or above threshold 0 3.201321340627 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778857_at YBR208C.S1 Urea amidolyase, contains both urea carboxylase and allophanate hydrolase activities, degrades urea to CO2 and NH3; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation 3.19717796650894 488.465667724609 265.546646118164 DUR1,2 256 // allantoin catabolism // traceable author statement /// 19627 // urea metabolism // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4039 // allophanate hydrolase activity // inferred from mutant phenotype /// 4847 // urea carboxylase activity // inferred from mutant phenotype 246.400024414063 394.0634765625 582.867858886719 284.693267822266 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR208C /GEN=DUR1,2 /DB_XREF=GI:6319685 /SEG=NC_001134:-636660,642167 /DEF=Urea amidolyase, contains both urea carboxylase and allophanate hydrolase activities, degrades urea to CO2 and NH3; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation /NOTE=Dur1,2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: allophanate hydrolase activity [goid GO:0004039] [evidence IMP] [pmid 6105114]; go_function: urea carboxylase activity [goid GO:0004847] [evidence IMP] [pmid 6105114]; go_process: allantoin catabolism [goid GO:0000256] [evidence TAS] [pmid 1938916]; go_process: urea metabolism [goid GO:0019627] [evidence IMP] [pmid 6105114] --- --- --- --- --- --- S0000412 // DUR1,2 SGDID:S0000412, Chr II from 642205-636698, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021307 // cdna:Genscan chromosome:SGD1:II:636698:642205:-1 // ensembl // 11 // --- /// GENEFINDER00000022110 // cdna:GeneFinder chromosome:SGD1:II:636698:642205:-1 // ensembl // 11 // --- /// YBR208C // cdna:known chromosome:SGD1:II:636698:642205:-1 gene:YBR208C // ensembl // 11 // --- --- No cerevisiae_gene 3.19717796650894 1.59928343148334 1.33578993207362 2.36553490720131 1.15541087505679 Max fold change at or above threshold 4 3.19717796650894 Max fold change at or above threshold -0.86591261305888 0.113089239675546 1.3648535551541 -0.612030181770768 377.006156921387 150.830615627542 0.400074674798992 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774977_at SPAC13G7.03.S1 --- 3.19709964207981 --- --- --- --- 0.859157681465149 0.344771921634674 1.26885187625885 0.268730342388153 0.780517995357513 0.870360970497131 0.753906011581421 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G7.03 /DEF=involved in mRNA catabolism, nonsense-mediated --- --- --- --- --- --- SPAC13G7.03 // |||up-frameshift suppressor3 family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.71360716605624 -2.49195954644916 1.53955225216338 1.4768556501701 -3.19709964207981 Max fold change at or above threshold 0 3.19709964207981 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774620_at SPAC12B10.02c.S1 --- 3.19682221911743 --- --- --- --- 0.420427411794662 1.34403169155121 0.43086189031601 0.312589555978775 0.850341975688934 0.850341975688934 0.981445014476776 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12B10.02c /DEF=sequence orphan --- --- --- --- --- --- SPAC12B10.02c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.01840407343681 3.19682221911743 -1.18152955917111 1.02481873976011 -1.34498227389021 Max fold change at or above threshold 0 3.19682221911743 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770183_at YJL193W.S1 Hypothetical protein 3.19336500769659 90.4559631347656 312.952514648438 --- --- --- --- 281.680633544922 92.7038345336914 88.2080917358398 344.224395751953 0.000244141003349796 0.0107421996071935 0.018554700538516 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL193W /GEN=CDC6 /DB_XREF=GI:6322268 /SEG=NC_001142:+71365,72573 /DEF=Hypothetical ORF /NOTE=Yjl193wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003729 // span:13-32,52-74,164-186,201-223,273-292,316-338,345-364,368-386 // numtm:8 S0003729 // YJL193W SGDID:S0003729, Chr X from 71365-72573, Uncharacterized ORF // sgd // 11 // --- /// YJL193W // cdna:known chromosome:SGD1:X:71365:72573:1 gene:YJL193W // ensembl // 11 // --- --- No cerevisiae_gene 1.05911716554655 -3.03850034857566 -1.12139290632145 -3.19336500769659 1.22203784981567 Max fold change at or above threshold 4 3.19336500769659 Max fold change at or above threshold 0.610579876237841 -0.832163711445379 -0.866486464965444 1.08807030017298 201.704238891602 130.984327793612 0.6493880768862 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1779760_at YBR187W.S1 Hypothetical protein 3.19290854819141 279.086166381836 891.913452148438 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 817.497131347656 256.035247802734 302.137084960938 966.329772949219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR187W /GEN=PCH2 /DB_XREF=GI:6319664 /SEG=NC_001134:+602591,603433 /DEF=Hypothetical ORF /NOTE=Ybr187wp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000391 // span:72-94,104-121,184-202,222-244,251-273 // numtm:5 S0000391 // YBR187W SGDID:S0000391, Chr II from 602629-603471, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022303 // cdna:GeneFinder chromosome:SGD1:II:601082:605503:1 // ensembl // 9 // --- /// GENSCAN00000021290 // cdna:Genscan chromosome:SGD1:II:602638:603471:1 // ensembl // 11 // --- /// YBR187W // cdna:known chromosome:SGD1:II:602629:603471:1 gene:YBR187W // ensembl // 11 // --- --- No cerevisiae_gene 1.77572894710888 -3.19290854819141 -1.22664905223199 -2.70571595490619 1.18205891604318 Max fold change at or above threshold 4 3.19290854819141 Max fold change at or above threshold 0.645354275288355 -0.916481972236458 -0.788239036319675 1.05936673326778 585.499809265137 359.488316675146 0.613985369399764 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776142_at SPBC839.09c.S1 --- 3.1927233501089 --- --- --- --- 1.55133855342865 0.694046080112457 4.95299482345581 1.60597169399261 0.601073980331421 0.962401986122131 0.432372987270355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC839.09c /GEN=mrp21 /DEF=mitochondrial ribosomal protein small subunit mrp21 --- --- --- --- --- --- SPBC839.09c // |mrp21||mitochondrial ribosomal protein small subunit Mrp21|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.25210451458712 -2.23520973301554 1.69731690094902 3.1927233501089 1.03521677485757 Max fold change at or above threshold 1 3.1927233501089 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780179_at SPCC1235.05c.S1 --- 3.19131619370066 --- --- --- --- 3.02093839645386 8.81277942657471 1.50356733798981 0.946612060070038 0.525390625 0.296142578125 0.665526986122131 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1235.05c /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPCC1235.05c // |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -2.04827175160413 2.91723241921107 1.30889615392447 -2.00918064666974 -3.19131619370066 Max fold change at or above threshold 2 3.19131619370066 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777254_at SPCC622.09.S1 --- 3.19118311991918 --- --- --- --- 2.69394755363464 8.45318031311035 8.59687995910645 6.65821218490601 0.533936023712158 0.533936023712158 0.303710997104645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC622.09 /GEN=htb1 /DEF=histone H2B (alpha) (PMID 3018512) --- --- --- --- --- --- SPCC622.09 // |htb1||histone H2B |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.13389738331843 3.13784145563837 -2.78093412610089 3.19118311991918 2.47154484352259 Max fold change at or above threshold 4 3.19118311991918 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774735_at SPBC887.09c.S1 --- 3.19019441504347 --- --- --- --- 9.33977031707764 3.97136449813843 16.9953155517578 3.56082558631897 0.601073980331421 0.466064006090164 0.219482004642487 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC887.09c /DEF=leucine-rich repeat protein --- --- --- --- --- --- SPBC887.09c // |||leucine-rich repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.02772504703644 -2.35177866988931 -3.19019441504347 1.81967168086373 -2.6229227157213 Max fold change at or above threshold 4 3.19019441504347 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771725_at YLR243W.S1 Protein required for cell viability 3.18999317352894 157.854072570801 417.588043212891 --- --- --- 5048 // signal sequence binding // inferred from sequence similarity 398.089935302734 124.793350219727 190.914794921875 437.086151123047 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR243W /GEN=ARV1 /DB_XREF=GI:6323272 /SEG=NC_001144:+624205,625023 /DEF=Protein required for cell viability /NOTE=Ylr243wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: signal sequence binding [goid GO:0005048] [evidence ISS] [pmid 14690591]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004233 // YLR243W SGDID:S0004233, Chr XII from 624205-625023, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018008 // cdna:Genscan chromosome:SGD1:XII:624205:625023:1 // ensembl // 11 // --- /// YLR243W // cdna:known chromosome:SGD1:XII:624205:625023:1 gene:YLR243W // ensembl // 11 // --- --- No cerevisiae_gene 1.11016142988089 -3.18999317352894 1.24739480541045 -2.0851706933747 1.09795830630749 Max fold change at or above threshold 4 3.18999317352894 Max fold change at or above threshold 0.720436831225243 -1.06351649294309 -0.631906375899794 0.974986037617641 287.721057891846 153.197161260044 0.532450291899145 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777762_at YBL104C.S1 Hypothetical protein 3.18998447908247 195.742721557617 429.266265869141 --- --- 5737 // cytoplasm // inferred from direct assay --- 447.083801269531 191.572967529297 199.912475585938 411.44873046875 0.000732421991415322 0.014160200022161 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL104C /GEN=PKC1 /DB_XREF=GI:41629671 /SEG=NC_001134:-18177,21293 /DEF=Hypothetical ORF /NOTE=Ybl104cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000200 // YBL104C SGDID:S0000200, Chr II from 21293-18177, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021056 // cdna:Genscan chromosome:SGD1:II:18177:21293:-1 // ensembl // 11 // --- /// GENEFINDER00000022258 // cdna:GeneFinder chromosome:SGD1:II:18177:21293:-1 // ensembl // 11 // --- /// YBL104C // cdna:known chromosome:SGD1:II:18177:21293:-1 gene:YBL104C // ensembl // 11 // --- M32491 // gb // 2 // Cross Hyb Matching Probes No cerevisiae_gene -3.18998447908247 -2.33375202689367 -1.02765931865471 -2.23639770334063 -1.0866087756795 Max fold change at or above threshold 4 3.18998447908247 Max fold change at or above threshold 0.992105321250925 -0.891495229191633 -0.830017202072524 0.729407110013232 312.504493713379 135.650222484911 0.434074470011705 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1779258_at SPAC21E11.03c.S1 --- 3.18895710089135 --- --- --- --- 3.48407363891602 6.75422954559326 11.1105613708496 5.62012147903442 0.303710997104645 0.432372987270355 0.303710997104645 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC21E11.03c /GEN=pcr1 /DEF=transcription factor (PMID 8557039) --- --- --- --- --- --- SPAC21E11.03c // |pcr1|mts2|bZIP |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.14332174619232 1.938601259787 1.14552347784862 3.18895710089135 1.61308917706544 Max fold change at or above threshold 4 3.18895710089135 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776916_at SPAC1093.04c.S1 --- 3.18779084265474 --- --- --- --- 1.49868428707123 3.55717515945435 4.19509696960449 3.16494750976563 0.490234375 0.219482004642487 0.194580003619194 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1093.04c /DEF=tRNA nucleotidyltransferase (predicted) --- --- --- --- --- --- SPAC1093.04c // |||tRNA nucleotidyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.98740577678349 2.37353203082277 3.18779084265474 2.79918659706687 2.1118173701218 Max fold change at or above threshold 3 3.18779084265474 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1774796_at YJR108W.S1 Protein of unknown function, required for normal microtubule organization 3.18769362849304 71.5923023223877 30.7375011444092 ABM1 226 // microtubule cytoskeleton organization and biogenesis // inferred from mutant phenotype --- --- 27.904167175293 54.2346687316895 88.9499359130859 33.5708351135254 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR108W /GEN=ABM1 /DB_XREF=GI:6322568 /SEG=NC_001142:+628627,628998 /DEF=Protein of unknown function, required for normal microtubule organization /NOTE=Abm1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: microtubule cytoskeleton organization and biogenesis [goid GO:0000226] [evidence IMP] [pmid 10628851] --- --- --- --- --- --- S0003869 // ABM1 SGDID:S0003869, Chr X from 628627-628998, Uncharacterized ORF // sgd // 11 // --- /// YJR108W // cdna:known chromosome:SGD1:X:628627:628998:1 gene:YJR108W // ensembl // 11 // --- --- No cerevisiae_gene 1.65779319226074 1.94360463765104 2.36500954898967 3.18769362849304 1.20307604604841 Max fold change at or above threshold 4 3.18769362849304 Max fold change at or above threshold -0.842326033417961 0.111163499704991 1.36828516243257 -0.637122628719601 51.1649017333984 27.6148826407738 0.539723163833379 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769920_at SPCC320.14.S1 --- 3.1873638566683 --- --- --- --- 4.483154296875 14.2894439697266 7.26879644393921 4.51526594161987 0.274170011281967 0.0239257998764515 0.0805663987994194 0.0239257998764515 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC320.14 /DEF=threo-3-hydroxyaspartate ammonia-lyase (predicted) --- --- --- --- --- --- SPCC320.14 // ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.10783232587268 3.1873638566683 1.03054386282879 1.62135763406715 1.00716273467707 Max fold change at or above threshold 4 3.1873638566683 Max fold change at or above threshold AAPAAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1774293_at SPAC212.04c.S1 --- 3.1873189003589 --- --- --- --- 1.24529731273651 0.390703707933426 0.570310354232788 0.395729422569275 0.888427972793579 0.919434010982513 0.870360970497131 0.86572265625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC212.04c /DEF=DUF999 --- --- --- --- --- --- SPAC212.04c // |||DUF999|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.99421074864147 -3.1873189003589 -1.74599532810564 -2.18354322956621 -3.14684034523239 Max fold change at or above threshold 0 3.1873189003589 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772590_at YER166W.S1 Non-essential P-type ATPase that is a potential aminophospholipid translocase, localizes to the plasma membrane and late exocytic or early endocytic membranes, likely involved in protein transport 3.18615109420898 449.865310668945 1250.88003540039 DNF1 6886 // intracellular protein transport // inferred from genetic interaction /// 6897 // endocytosis // inferred from mutant phenotype /// 45332 // phospholipid translocation // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 4012 // phospholipid-translocating ATPase activity // inferred from sequence similarity 1015.24407958984 318.642791748047 581.087829589844 1486.51599121094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER166W /GEN=DNF1 /DB_XREF=GI:6321014 /SEG=NC_001137:+512739,517454 /DEF=Non-essential P-type ATPase that is a potential aminophospholipid translocase, localizes to the plasma membrane and late exocytic or early endocytic membranes, likely involved in protein transport /NOTE=Dnf1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12221123]; go_function: phospholipid-translocating ATPase activity [goid GO:0004012] [evidence ISS] [pmid 12221123]; go_process: intracellular protein transport [goid GO:0006886] [evidence IGI] [pmid 12221123] --- --- --- ec // A8A2_HUMAN // (Q9NTI2) Potential phospholipid-transporting ATPase IB (EC 3.6.3.1) (ATPase class I type 8A member 2) (ML-1) // 0.0 --- S0000968 // span:222-256,553-575,599-621,1191-1208,1218-1240,1270-1292,1307-1329,1336-1355,1370-1392 // numtm:9 S0000968 // DNF1 SGDID:S0000968, Chr V from 512739-517454, Verified ORF // sgd // 11 // --- /// GENSCAN00000016945 // cdna:Genscan chromosome:SGD1:V:512739:517454:1 // ensembl // 11 // --- /// GENEFINDER00000019598 // cdna:GeneFinder chromosome:SGD1:V:513093:517454:1 // ensembl // 11 // --- /// YER166W // cdna:known chromosome:SGD1:V:512739:517454:1 gene:YER166W // ensembl // 11 // --- --- No cerevisiae_gene -1.67890577845067 -3.18615109420898 1.31679423755027 -1.74714393916397 1.46419567579403 Max fold change at or above threshold 4 3.18615109420898 Max fold change at or above threshold 0.32187536023451 -1.03808629199331 -0.525719758207372 1.24193068996618 850.372673034668 512.22127234298 0.602349168294708 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772533_at YPL128C.S1 Telobox-containing general regulatory factor; binds to TTAGGG repeats within subtelomeric anti-silencing regions (STARs) and possibly throughout the genome and mediates their insulating capacity by blocking silent chromatin propagation 3.18581889650981 195.250625610352 624.682586669922 TBF1 6345 // loss of chromatin silencing // inferred from direct assay 228 // nuclear chromosome // inferred from physical interaction /// 784 // nuclear chromosome, telomeric region // traceable author statement /// 5634 // nucleus // inferred from direct assay 3677 // DNA binding // inferred from physical interaction /// 3700 // transcription factor activity // traceable author statement /// 43035 // chromatin insulator sequence binding // inferred from direct assay 567.713500976563 212.301071166992 178.200180053711 681.651672363281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL128C /GEN=TBF1 /DB_XREF=GI:6325129 /SEG=NC_001148:-306532,308220 /DEF=TTAGGG repeat binding factor /NOTE=Tbf1p; go_component: nuclear chromosome [goid GO:0000228] [evidence IPI] [pmid 10871401]; go_component: nuclear chromosome, telomeric region [goid GO:0000784] [evidence TAS] [pmid 10871401]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: DNA binding [goid GO:0003677] [evidence IPI] [pmid 10871401]; go_function: transcription factor activity [goid GO:0003700] [evidence TAS] [pmid 12200417]; go_process: loss of chromatin silencing [goid GO:0006345] [evidence IDA] [pmid 11258704] --- --- --- --- scop // a.4.1.DNA-binding domain of human telomeric protein, hTRF1 // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; DNA-binding domain of human telomeric protein, hTRF1 // 0.00100000004749745 --- S0006049 // TBF1 SGDID:S0006049, Chr XVI from 308220-306532, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017091 // cdna:Genscan chromosome:SGD1:XVI:306532:308220:-1 // ensembl // 11 // --- /// GENEFINDER00000020912 // cdna:GeneFinder chromosome:SGD1:XVI:306532:308220:-1 // ensembl // 11 // --- /// YPL128C // cdna:known chromosome:SGD1:XVI:306532:308220:-1 gene:YPL128C // ensembl // 11 // --- --- No cerevisiae_gene -1.1037722370266 -2.67409626270802 -1.03379344577068 -3.18581889650981 1.20069660346412 Max fold change at or above threshold 4 3.18581889650981 Max fold change at or above threshold 0.624388616147125 -0.782393276075844 -0.917370311495047 1.07537497142377 409.966606140137 252.64216988744 0.616250607009394 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774637_at SPBC1539.07c.S1 --- 3.18581479373766 --- --- --- --- 5.98814916610718 2.55397081375122 8.24922466278076 5.01288938522339 0.274170011281967 0.398925989866257 0.0676269978284836 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1539.07c /DEF=glutathione dependent formaldehyde dehydrogenase (predicted) --- --- --- --- --- --- D89220 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1292. // gb // 10 // --- /// SPBC1539.07c // |||glutathione dependent formaldehyde dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.18581479373766 -2.34464275545573 -2.37996589072714 1.37759171222241 -1.19455042909157 Max fold change at or above threshold 4 3.18581479373766 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777175_at YGR121C.S1 Ammonium permease; belongs to a ubiquitous family of cytoplasmic membrane proteins that transport only ammonium (NH4+); expression is under the nitrogen catabolite repression regulation 3.18547151726455 3190.96704101563 1028.73461914063 MEP1 15696 // ammonium transport // inferred from sequence similarity /// 15696 // ammonium transport // inferred from mutant phenotype 5886 // plasma membrane // traceable author statement /// 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from mutant phenotype 8519 // ammonium transporter activity // inferred from sequence similarity /// 8519 // ammonium transporter activity // inferred from mutant phenotype 1011.71484375 3222.78881835938 3159.14526367188 1045.75439453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR121C /GEN=MEP1 /DB_XREF=GI:6321559 /SEG=NC_001139:-731452,732930 /DEF=belongs to a ubiquitous family of cytoplasmic membrane proteins that transport only ammonium (NH(4)(+) + NH(3)). /NOTE=Mep1p; go_component: plasma membrane [goid GO:0005886] [evidence TAS] [pmid 11486013]; go_component: plasma membrane [goid GO:0005886] [evidence IMP,ISS] [pmid 9234685]; go_function: ammonium transporter activity [goid GO:0008519] [evidence IMP,ISS] [pmid 9234685]; go_process: ammonium transport [goid GO:0015696] [evidence IMP,ISS] [pmid 9234685] --- --- --- --- --- S0003353 // span:20-42,49-71,110-132,137-159,174-196,203-225,240-262,269-286,291-310,330-352,374-396 // numtm:11 S0003353 // MEP1 SGDID:S0003353, Chr VII from 732932-731454, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019434 // cdna:Genscan chromosome:SGD1:VII:731454:732932:-1 // ensembl // 11 // --- /// GENEFINDER00000021660 // cdna:GeneFinder chromosome:SGD1:VII:731454:732761:-1 // ensembl // 11 // --- /// YGR121C // cdna:known chromosome:SGD1:VII:731454:732932:-1 gene:YGR121C // ensembl // 11 // --- --- No cerevisiae_gene -1.04252730323888 3.18547151726455 1.57790401700393 3.1225649037255 1.03364540017529 Max fold change at or above threshold 4 3.18547151726455 Max fold change at or above threshold -0.879414123638807 0.8912679283932 0.84030061508448 -0.852154419838874 2109.85083007813 1248.71315664604 0.591849024985241 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780192_at YMR061W.S1 Cleavage and polyadenylation factor I (CF I) component involved in cleavage and polyadenylation of mRNA 3' ends; bridges interaction between Rna15p and Hrp1p in the CF I complex 3.18493610826767 156.956092834473 460.571151733398 RNA14 6378 // mRNA polyadenylylation // inferred from direct assay /// 6379 // mRNA cleavage // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5849 // mRNA cleavage factor complex // inferred from physical interaction 3723 // RNA binding // inferred from direct assay /// 46982 // protein heterodimerization activity // inferred from physical interaction 443.9482421875 139.389999389648 174.522186279297 477.194061279297 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR061W /GEN=RNA14 /DB_XREF=GI:6323706 /SEG=NC_001145:+392754,394787 /DEF=Cleavage and polyadenylation factor I (CF I) component involved in cleavage and polyadenylation of mRNA 3' ends; bridges interaction between Rna15p and Hrp1p in the CF I complex /NOTE=Rna14p; go_component: mRNA cleavage factor complex [goid GO:0005849] [evidence IPI] [pmid 11344258]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 10660071]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10660071]; go_function: cleavage/polyadenylation specificity factor activity [goid GO:0030364] [evidence IDA] [pmid 11344258]; go_process: mRNA cleavage [goid GO:0006379] [evidence IDA] [pmid 11344258]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IDA] [pmid 11344258] --- --- --- --- scop // a.4.5.Forkhead DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Forkhead DNA-binding domain // 1.0 --- S0004665 // RNA14 SGDID:S0004665, Chr XIII from 392754-394787, Verified ORF // sgd // 11 // --- /// GENSCAN00000018764 // cdna:Genscan chromosome:SGD1:XIII:392754:394787:1 // ensembl // 11 // --- /// GENEFINDER00000021950 // cdna:GeneFinder chromosome:SGD1:XIII:392754:394787:1 // ensembl // 11 // --- /// YMR061W // cdna:known chromosome:SGD1:XIII:392754:394787:1 gene:YMR061W // ensembl // 11 // --- --- No cerevisiae_gene 1.02050807242803 -3.18493610826767 -1.19386369664612 -2.54379257819419 1.0748867005937 Max fold change at or above threshold 4 3.18493610826767 Max fold change at or above threshold 0.766348609681 -0.96016277971758 -0.761001790862921 0.9548159608995 308.763622283936 176.400946247996 0.571313890357782 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780212_at SPBC25H2.05.S1 --- 3.18488491230291 --- --- --- --- 0.426624029874802 1.35874843597412 0.429634183645248 0.465858042240143 0.962401986122131 0.943848013877869 0.962401986122131 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25H2.05 /DEF=nascent polypeptide-associated complex (alpha subunit) (predicted) --- --- --- --- --- --- SPBC25H2.05 // |||nascent polypeptide-associated complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.3738252291 3.18488491230291 1.64211787991822 1.00705575298075 1.09196390643268 Max fold change at or above threshold 0 3.18488491230291 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772951_at SPAC1782.04.S1 --- 3.18487290261386 --- --- --- --- 6.83825874328613 8.61320972442627 6.2548041343689 5.28391361236572 0.567627012729645 0.398925989866257 0.366210997104645 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1782.04 /DEF=hypothetical protein --- --- --- --- --- --- SPAC1782.04 // |||mitochondrial protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.18487290261386 1.25956183405356 1.03653188914367 -1.09328103588588 -1.29416550779385 Max fold change at or above threshold 4 3.18487290261386 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770748_at YKL053C-A.S1 Mitochondrial Distribution and Morphology; Similar to human sequence predicted by GENSCAN 3.18430738175696 2528.08575439453 992.666015625 MDM35 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 945.682495117188 3011.34375 2044.82775878906 1039.64953613281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL053C-A /GEN=MDM35 /DB_XREF=GI:6322797 /SEG=NC_001143:-338827,339087 /DEF=Mitochondrial Distribution and Morphology /NOTE=Mdm35p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence IMP] [pmid 11907266] --- --- --- --- --- --- S0007243 // MDM35 SGDID:S0007243, Chr XI from 339087-338827, reverse complement, Verified ORF // sgd // 11 // --- /// YKL053C-A // cdna:known chromosome:SGD1:XI:338827:339087:-1 gene:YKL053C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.01183451119002 3.18430738175696 1.43911958013334 2.16227726467081 1.09936425967574 Max fold change at or above threshold 4 3.18430738175696 Max fold change at or above threshold -0.838953601458094 1.28821960342686 0.292922376576678 -0.742188378545442 1760.37588500977 971.082773203009 0.551633762693598 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772798_at SPAC1B1.03c.S1 --- 3.18414936962705 --- --- --- --- 4.67428636550903 1.94514107704163 14.8836259841919 1.68486642837524 0.366210997104645 0.919434010982513 0.398925989866257 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B1.03c /GEN=kap95 /DEF=karyopherin (predicted) --- --- --- --- --- --- SPAC1B1.03c // |kap95||karyopherin |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.01074883986521 -2.40305776309972 -2.45719333395916 3.18414936962705 -2.77427710991699 Max fold change at or above threshold 2 3.18414936962705 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769588_at SPAC1071.12c.S1 --- 3.18413420728054 --- --- --- --- 1.10259556770325 0.346277981996536 0.362486869096756 0.376307845115662 0.780517995357513 0.828612983226776 0.780517995357513 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1071.12c /GEN=stp1 /DEF=low molecular weight phosphotyrosine protein phosphatase (PMID 7961734) --- --- --- --- --- --- L33929 // Schizosaccharomyces pombe low Mr protein tyrosine phosphatase mRNA, complete cds. // gb // 11 // --- /// SPAC1071.12c // |stp1|SPAC926.01c|low molecular weight phosphotyrosine protein phosphatase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.72001069272366 -3.18413420728054 1.13231570760069 -3.04175312736346 -2.93003609149938 Max fold change at or above threshold 0 3.18413420728054 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773506_at YLR173W.S1 Hypothetical protein 3.18352441259487 992.177764892578 381.078964233398 --- --- --- --- 352.784332275391 861.257995605469 1123.09753417969 409.373596191406 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR173W /GEN=DPH5 /DB_XREF=GI:6323202 /SEG=NC_001144:+502423,504249 /DEF=Hypothetical ORF /NOTE=Ylr173wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004163 // span:53-75 // numtm:1 S0004163 // YLR173W SGDID:S0004163, Chr XII from 502423-504249, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017954 // cdna:Genscan chromosome:SGD1:XII:502423:504249:1 // ensembl // 11 // --- /// GENEFINDER00000024802 // cdna:GeneFinder chromosome:SGD1:XII:502423:504249:1 // ensembl // 11 // --- /// YLR173W // cdna:known chromosome:SGD1:XII:502423:504249:1 gene:YLR173W // ensembl // 11 // --- --- No cerevisiae_gene -1.37158732723809 2.44131588852181 1.68718992854435 3.18352441259487 1.16040753156759 Max fold change at or above threshold 4 3.18352441259487 Max fold change at or above threshold -0.903797695312707 0.472765252049005 1.1816291184585 -0.750596675194794 686.628364562988 369.37915865352 0.537960820899985 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773038_at SPBC1709.01.S1 --- 3.18268066147388 --- --- --- --- 2.54308390617371 3.35912609100342 4.34183311462402 0.799038350582123 0.398925989866257 0.149657994508743 0.0561522990465164 0.5 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1709.01 /GEN=chs2 /DEF=chitin synthase family --- --- --- --- --- --- SPBC1709.01 // |chs2|SPBC1734.17|chitin synthase II|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.36225310323341 1.32088685035073 1.08400175990794 1.70731020871297 -3.18268066147388 Max fold change at or above threshold 3 3.18268066147388 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1774310_at SPCC24B10.17.S1 --- 3.18242159068352 --- --- --- --- 0.688017904758453 0.926316201686859 1.11075294017792 0.231994092464447 0.753906011581421 0.850341975688934 0.696289002895355 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC24B10.17 /DEF=emp24 family --- --- --- --- --- --- SPCC24B10.17 // |||emp24 family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.18501012100629 1.34635479001388 -3.18242159068352 1.61442446845606 -2.96566993344407 Max fold change at or above threshold 0 3.18242159068352 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769949_at SPBP8B7.03c.S1 --- 3.18227522172601 --- --- --- --- 0.477631360292435 1.42330849170685 1.51995444297791 0.791321933269501 0.997070014476776 0.962401986122131 0.968017578125 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.03c /GEN=rpl402 /DEF=60S ribosomal protein L2 --- --- --- --- --- --- SPBP8B7.03c // |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.26286561838348 2.97993098869265 2.00463116151106 3.18227522172601 1.65676293278776 Max fold change at or above threshold 0 3.18227522172601 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774700_at SPAPB8E5.07c.S1 --- 3.18194367927092 --- --- --- --- 1.98084282875061 1.39983785152435 3.07895398139954 2.47145438194275 0.398925989866257 0.601073980331421 0.466064006090164 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB8E5.07c /DEF=HEAT repeat --- --- --- --- --- --- SPAPB8E5.07c // |||HEAT repeat|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.14958323016392 -1.41505162658202 -3.18194367927092 1.55436561483353 1.24767818328201 Max fold change at or above threshold 1 3.18194367927092 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772464_at YOR035C.S1 Protein containing a UCS (UNC-45/CRO1/SHE4) domain, binds to myosin motor domains to regulate myosin function; involved in endocytosis, polarization of the actin cytoskeleton, and asymmetric mRNA localization 3.18193939355866 2501.13537597656 875.615356445313 SHE4 8298 // intracellular mRNA localization // inferred from mutant phenotype /// 30036 // actin cytoskeleton organization and biogenesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 17022 // myosin binding // inferred from direct assay 958.357360839844 2741.84643554688 2260.42431640625 792.873352050781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR035C /GEN=SHE4 /DB_XREF=GI:6324609 /SEG=NC_001147:-397734,400103 /DEF=Protein containing a UCS (UNC-45/CRO1/SHE4) domain, binds to myosin motor domains to regulate myosin function; involved in endocytosis, polarization of the actin cytoskeleton, and asymmetric mRNA localization /NOTE=She4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 8625407]; go_function: myosin binding [goid GO:0017022] [evidence IDA] [pmid 12725728]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence TAS] [pmid 10792032]; go_process: mRNA localization, intracellular [goid GO:0008298] [evidence IMP] [pmid 11553699] --- --- --- --- --- --- S0005561 // SHE4 SGDID:S0005561, Chr XV from 400103-397734, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017490 // cdna:Genscan chromosome:SGD1:XV:397734:400103:-1 // ensembl // 11 // --- /// GENEFINDER00000022552 // cdna:GeneFinder chromosome:SGD1:XV:397734:399941:-1 // ensembl // 11 // --- /// YOR035C // cdna:known chromosome:SGD1:XV:397734:400103:-1 gene:YOR035C // ensembl // 11 // --- --- No cerevisiae_gene -3.18193939355866 2.86098541899245 1.34623764634298 2.35864449814979 -1.20871430268281 Max fold change at or above threshold 4 3.18193939355866 Max fold change at or above threshold -0.759462073126518 1.09596108097358 0.595121597616396 -0.931620605463459 1688.37536621094 961.230364494424 0.569322665878278 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769346_at YOL008W.S1 Hypothetical protein 3.18168021461917 123.349391937256 313.153778076172 --- --- --- --- 300.141906738281 94.3344039916992 152.364379882813 326.165649414063 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL008W /GEN=MDM12 /DB_XREF=GI:6324566 /SEG=NC_001147:+310312,310935 /DEF=Hypothetical ORF /NOTE=Yol008wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005368 // YOL008W SGDID:S0005368, Chr XV from 310312-310935, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017462 // cdna:Genscan chromosome:SGD1:XV:310363:310935:1 // ensembl // 11 // --- /// YOL008W // cdna:known chromosome:SGD1:XV:310312:310935:1 gene:YOL008W // ensembl // 11 // --- --- No cerevisiae_gene -1.35943067581537 -3.18168021461917 1.28979822166639 -1.9698955029327 1.08670479560348 Max fold change at or above threshold 4 3.18168021461917 Max fold change at or above threshold 0.727154902475947 -1.10033742413949 -0.585053315254159 0.958235836917706 218.251585006714 112.617437430089 0.515998256904409 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770875_at SPACUNK4.07c.S1 --- 3.18018946475775 --- --- --- --- 1.01123642921448 0.31797993183136 1.032799243927 0.420710682868958 0.888427972793579 0.962401986122131 0.932372987270355 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPACUNK4.07c /GEN=cta4 /DEF=P-type ATPase (PMID 12707717) --- --- --- --- --- --- SPACUNK4.07c // |cta4|sev4, SPAPYUK71.01|P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.11842059039952 -3.18018946475775 1.17095601887381 1.02132321788414 -2.40363858202635 Max fold change at or above threshold 0 3.18018946475775 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778073_at YOL093W.S1 tRNA methyltransferase, methylates the N-1 position of guanosine in tRNAs 3.18012440216805 121.001693725586 157.518890380859 TRM10 30488 // tRNA methylation // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 16423 // tRNA (guanine) methyltransferase activity // inferred from direct assay 146.489181518555 92.3562316894531 149.647155761719 168.548599243164 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL093W /GEN=TRM10 /DB_XREF=GI:6324479 /SEG=NC_001147:+142814,143695 /DEF=responsible for most, if not all, m(1)G(9) modification of tRNAs. /NOTE=Trm10p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: tRNA (guanine) methyltransferase activity [goid GO:0016423] [evidence IDA] [pmid 12702816]; go_process: tRNA methylation [goid GO:0030488] [evidence IDA] [pmid 12702816] --- --- --- --- --- --- S0005453 // TRM10 SGDID:S0005453, Chr XV from 142814-143695, Verified ORF // sgd // 11 // --- /// GENSCAN00000017392 // cdna:Genscan chromosome:SGD1:XV:142814:143695:1 // ensembl // 11 // --- /// GENEFINDER00000022665 // cdna:GeneFinder chromosome:SGD1:XV:142814:143695:1 // ensembl // 11 // --- /// YOL093W // cdna:known chromosome:SGD1:XV:142814:143695:1 gene:YOL093W // ensembl // 11 // --- --- No cerevisiae_gene 3.18012440216805 -1.58613207618868 1.65189433888367 1.02155773013698 1.15058735051923 Max fold change at or above threshold 4 3.18012440216805 Max fold change at or above threshold 0.2207208030484 -1.43212894862632 0.317143720330525 0.894264425247395 139.260292053223 32.7512829125892 0.235180340567376 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771977_at YBR085C-A.S1 Hypothetical protein 3.18010888869601 6049.7451171875 2245.36657714844 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 2340.2265625 7442.17529296875 4657.31494140625 2150.50659179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR085C-A /GEN=AAC3 /DB_XREF=GI:9755326 /SEG=NC_001134:-418864,419121 /DEF=Hypothetical ORF /NOTE=Ybr085c-ap; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007522 // YBR085C-A SGDID:S0007522, Chr II from 419158-418901, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022289 // cdna:GeneFinder chromosome:SGD1:II:418901:419158:-1 // ensembl // 11 // --- /// YBR085C-A // cdna:known chromosome:SGD1:II:418901:419158:-1 gene:YBR085C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.10830588169729 3.18010888869601 -1.04206576181365 1.99011284464311 -1.08822105983158 Max fold change at or above threshold 4 3.18010888869601 Max fold change at or above threshold -0.730390239470472 1.3314440851461 0.206007322556802 -0.807061168232434 4147.55584716797 2474.47075138664 0.596609386966124 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774757_at YPL012W.S1 Protein required for export of the ribosomal subunits; associates with the RNA components of the pre-ribosomes; contains HEAT-repeats 3.17712936167426 232.079162597656 405.23779296875 RRP12 7046 // ribosome biogenesis // traceable author statement /// 30490 // processing of 20S pre-rRNA // traceable author statement 5634 // nucleus // inferred from direct assay /// 5840 // ribosome // traceable author statement --- 365.377685546875 217.086654663086 247.071670532227 445.097900390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL012W /GEN=RRP12 /DB_XREF=GI:6325245 /SEG=NC_001148:+529718,533404 /DEF=Required for normal pre-rRNA Processing. Member of a group of seven genes whose expression is repressed during growth on glucose before and during the diauxic shift. /NOTE=Rrp12p; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 12067653]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence TAS] [pmid 12067653]; go_process: ribosome biogenesis [goid GO:0007046] [evidence TAS] [pmid 12067653] --- --- --- --- --- --- S0005933 // RRP12 SGDID:S0005933, Chr XVI from 529720-533406, Verified ORF // sgd // 11 // --- /// GENSCAN00000017175 // cdna:Genscan chromosome:SGD1:XVI:529720:533406:1 // ensembl // 11 // --- /// GENEFINDER00000020983 // cdna:GeneFinder chromosome:SGD1:XVI:529720:533406:1 // ensembl // 11 // --- /// YPL012W // cdna:known chromosome:SGD1:XVI:529720:533406:1 gene:YPL012W // ensembl // 11 // --- --- No cerevisiae_gene 3.17712936167426 -1.6830960250133 -1.14467411381828 -1.47883278062516 1.21818577870849 Max fold change at or above threshold 4 3.17712936167426 Max fold change at or above threshold 0.441381998277121 -0.959604762225189 -0.676319859586415 1.19454262353448 318.658477783203 105.847560494163 0.332166152397725 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776097_at YHL011C.S1 5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, involved in nucleotide, histidine, and tryptophan biosynthesis; one of a five related enzymes, which are active as heteromultimeric complexes 3.17671366987988 1454.57623291016 741.669311523438 PRS3 105 // histidine biosynthesis // traceable author statement /// 162 // tryptophan biosynthesis // traceable author statement /// 6166 // purine ribonucleoside salvage // traceable author statement /// 6189 // 'de novo' IMP biosynthesis // traceable author statement /// 6207 // 'de novo' pyrimidine base biosynthesis // traceable author statement /// 8361 // regulation of cell size // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 4749 // ribose-phosphate diphosphokinase activity // traceable author statement 689.520263671875 1312.82055664063 1596.33190917969 793.818359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL011C /GEN=PRS3 /DB_XREF=GI:6321776 /SEG=NC_001140:-80649,81611 /DEF=5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, involved in nucleotide, histidine, and tryptophan biosynthesis; one of a five related enzymes, which are active as heteromultimeric complexes /NOTE=Prs3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: ribose-phosphate diphosphokinase activity [goid GO:0004749] [evidence TAS] [pmid 10212224]; go_process: 'de novo' IMP biosynthesis [goid GO:0006189] [evidence TAS] [pmid 10212224]; go_process: 'de novo' pyrimidine base biosynthesis [goid GO:0006207] [evidence TAS] [pmid 10212224]; go_process: histidine biosynthesis [goid GO:0000105] [evidence TAS] [pmid 10212224]; go_process: purine ribonucleoside salvage [goid GO:0006166] [evidence TAS] [pmid 10212224]; go_process: regulation of cell size [goid GO:0008361] [evidence IDA] [pmid 12089449]; go_process: tryptophan biosynthesis [goid GO:0000162] [evidence TAS] [pmid 10212224] --- --- --- --- --- --- S0001003 // PRS3 SGDID:S0001003, Chr VIII from 81611-80649, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016545 // cdna:Genscan chromosome:SGD1:VIII:80649:81611:-1 // ensembl // 11 // --- /// GENEFINDER00000020261 // cdna:GeneFinder chromosome:SGD1:VIII:80649:81611:-1 // ensembl // 11 // --- /// YHL011C // cdna:known chromosome:SGD1:VIII:80649:81611:-1 gene:YHL011C // ensembl // 11 // --- --- No cerevisiae_gene 3.17671366987988 1.90396225580016 1.31792353789911 2.31513414947199 1.15126182825681 Max fold change at or above threshold 4 3.17671366987988 Max fold change at or above threshold -0.950954690629122 0.499673547997988 1.15949928304726 -0.708218140416123 1098.1227722168 429.676106097761 0.391282392979036 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775440_at YPR075C.S1 Protein of unknown function, overproduction blocks cell cycle arrest in the presence of mating pheromone 3.17441837377573 874.052230834961 1556.57495117188 OPY2 751 // cell cycle arrest in response to pheromone // inferred from genetic interaction 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1575.94323730469 496.451019287109 1251.65344238281 1537.20666503906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR075C /GEN=OPY2 /DB_XREF=GI:6325333 /SEG=NC_001148:-695732,696814 /DEF=Protein of unknown function, overproduction blocks cell cycle arrest in the presence of mating pheromone /NOTE=Opy2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell cycle arrest in response to pheromone [goid GO:0000751] [evidence IGI] [pmid 9383053] --- --- --- --- --- AAB81506.1 // span:93-115 // numtm:1 /// S0006279 // span:93-115 // numtm:1 S0006279 // OPY2 SGDID:S0006279, Chr XVI from 696816-695734, reverse complement, Verified ORF // sgd // 11 // --- /// AF016263 // Saccharomyces cerevisiae overproduction induced pheromone resistant yeast 2 (OPY2) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000017242 // cdna:Genscan chromosome:SGD1:XVI:695734:696816:-1 // ensembl // 11 // --- /// GENEFINDER00000020910 // cdna:GeneFinder chromosome:SGD1:XVI:695734:696816:-1 // ensembl // 11 // --- /// YPR075C // cdna:known chromosome:SGD1:XVI:695734:696816:-1 gene:YPR075C // ensembl // 11 // --- --- No cerevisiae_gene -1.11669552372116 -3.17441837377573 -1.04625410677036 -1.25908912478562 -1.02519932624976 Max fold change at or above threshold 4 3.17441837377573 Max fold change at or above threshold 0.720417915691984 -1.43604798134706 0.0725949190694911 0.643035146585585 1215.31359100342 500.583950573846 0.411896941068964 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778012_at SPAC24H6.04.S1 --- 3.17424639984553 --- --- --- --- 1.16019189357758 0.8176189661026 1.46599137783051 0.365501523017883 0.870360970497131 0.780517995357513 0.828612983226776 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24H6.04 /GEN=hxk1 /DEF=hexokinase (PMID 8549830) --- --- --- --- --- --- X92894 // S.pombe mRNA for hexokinase 1. // gb // 11 // --- /// SPAC24H6.04 // |hxk1||hexokinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.69765499653477 -1.41898847957006 -1.70480334949082 1.26357664274826 -3.17424639984553 Max fold change at or above threshold 0 3.17424639984553 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772170_at YGR217W.S1 Voltage-gated calcium channel involved in calcium influx in response to mating pheromones 3.17422790914928 110.117309570313 322.364730834961 CCH1 6816 // calcium ion transport // inferred from direct assay 5886 // plasma membrane // inferred from direct assay 5262 // calcium channel activity // inferred from direct assay 301.126586914063 125.368530273438 94.8660888671875 343.602874755859 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR217W /GEN=CCH1 /DB_XREF=GI:6321656 /SEG=NC_001139:+924697,930816 /DEF=calcium channel /NOTE=Cch1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 10958666]; go_function: calcium channel activity [goid GO:0005262] [evidence IDA] [pmid 10958666]; go_process: calcium ion transport [goid GO:0006816] [evidence IDA] [pmid 10958666] --- --- --- --- scop // a.4.1.Centromere-binding // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding // 1.10000002384186 S0003449 // span:346-368,383-405,557-579,658-680,692-714,766-788,809-826,841-863,896-918,933-952,973-995,1207-1229,1241-1263,1278-1297,1340-1362,1451-1473,1530-1547,1557-1574,1595-1614,1618-1637,1658-1680,1753-1775 // numtm:22 S0003449 // CCH1 SGDID:S0003449, Chr VII from 924699-930818, Verified ORF // sgd // 11 // --- /// GENSCAN00000019509 // cdna:Genscan chromosome:SGD1:VII:924699:930818:1 // ensembl // 11 // --- /// GENEFINDER00000021526 // cdna:GeneFinder chromosome:SGD1:VII:924699:930818:1 // ensembl // 10 // --- /// YGR217W // cdna:known chromosome:SGD1:VII:924699:930818:1 gene:YGR217W // ensembl // 11 // --- --- No cerevisiae_gene -2.10929369889263 -2.40193122035717 1.15665911581224 -3.17422790914928 1.14105791281033 Max fold change at or above threshold 4 3.17422790914928 Max fold change at or above threshold 0.682431856115646 -0.73056332630794 -0.975785671064037 1.02391714125633 216.241020202637 124.386876067874 0.575223313094399 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775265_at YPR009W.S1 Putative transcription factor; multicopy suppressor of mutations that cause low activity of the cAMP/protein kinase A pathway; highly similar to Sut1p 3.1740309972702 191.53337097168 73.7944717407227 SUT2 6357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence similarity /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 15918 // sterol transport // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 3704 // specific RNA polymerase II transcription factor activity // inferred from sequence similarity /// 3704 // specific RNA polymerase II transcription factor activity // inferred from mutant phenotype 69.6841659545898 186.545074462891 196.521667480469 77.9047775268555 0.00195312988944352 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR009W /GEN=SUT2 /DB_XREF=GI:6325266 /SEG=NC_001148:+576547,577353 /DEF=Involved in sterol uptake; homologous to SUT1 /NOTE=Sut2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 15030478]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IMP,ISS] [pmid 11248676]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP,ISS] [pmid 11248676]; go_process: sterol transport [goid GO:0015918] [evidence IMP] [pmid 11248676] --- --- --- --- --- --- S0006213 // SUT2 SGDID:S0006213, Chr XVI from 576549-577355, Verified ORF // sgd // 11 // --- /// GENSCAN00000017193 // cdna:Genscan chromosome:SGD1:XVI:576549:577355:1 // ensembl // 11 // --- /// GENEFINDER00000021036 // cdna:GeneFinder chromosome:SGD1:XVI:576549:577355:1 // ensembl // 11 // --- /// YPR009W // cdna:known chromosome:SGD1:XVI:576549:577355:1 gene:YPR009W // ensembl // 11 // --- --- No cerevisiae_gene 3.1740309972702 2.67700806786514 -1.23564196638987 2.82017679035627 1.11796957687092 Max fold change at or above threshold 4 3.1740309972702 Max fold change at or above threshold -0.923712258191306 0.790264765125751 0.936589583419455 -0.8031420903539 132.663921356201 68.1811406562149 0.513938830988942 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773297_at SPCC1183.05c.S1 --- 3.17291046361049 --- --- --- --- 3.0523521900177 9.68484020233154 7.19563817977905 2.92487597465515 0.5 0.0952147990465164 0.149657994508743 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1183.05c /GEN=lig4 /DEF=DNA ligase --- --- --- --- --- --- SPCC1183.05c // |lig4||DNA ligase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.44857302401962 3.17291046361049 1.21966143625308 2.35740757678993 -1.04358346010811 Max fold change at or above threshold 4 3.17291046361049 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775875_at YDR014W.S1 Protein of unknown function; mutation confers radiation sensitivity 3.17108906211115 165.51594543457 104.530925750732 RAD61 9314 // response to radiation // inferred from mutant phenotype 5634 // nucleus // inferred from sequence similarity --- 84.0613250732422 182.329223632813 148.702667236328 125.000526428223 0.000244141003349796 0.00292969006113708 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR014W /GEN=RAD61 /DB_XREF=GI:6320217 /SEG=NC_001136:+474043,475986 /DEF=Protein of unknown function; mutation confers radiation sensitivity /NOTE=Rad61p; go_component: nucleus [goid GO:0005634] [evidence ISS] [pmid 12816519]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to radiation [goid GO:0009314] [evidence IMP] [pmid 12816519] --- --- --- --- --- --- S0002421 // RAD61 SGDID:S0002421, Chr IV from 474043-475986, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023698 // cdna:GeneFinder chromosome:SGD1:IV:474043:475986:1 // ensembl // 11 // --- /// GENSCAN00000025109 // cdna:Genscan chromosome:SGD1:IV:474715:475986:1 // ensembl // 11 // --- /// YDR014W // cdna:known chromosome:SGD1:IV:474043:475986:1 gene:YDR014W // ensembl // 11 // --- --- No cerevisiae_gene 1.38333935676305 2.16900249281046 3.17108906211115 1.76897838699026 1.48701589368607 Max fold change at or above threshold 4 3.17108906211115 Max fold change at or above threshold -1.23328867670425 1.14480527077626 0.331038909499948 -0.24255550357196 135.023435592651 41.322126345631 0.30603669773516 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779235_at YER060W.S1 Putative purine-cytosine permease, very similar to Fcy2p but cannot substitute for its function 3.17088666310304 177.54557800293 439.779693603516 FCY21 --- 16021 // integral to membrane // inferred from sequence similarity 15392 // cytosine-purine permease activity // inferred from sequence similarity 444.878021240234 140.300827026367 214.790328979492 434.681365966797 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER060W /GEN=FCY21 /DB_XREF=GI:6320902 /SEG=NC_001137:+274565,276151 /DEF=Putative purine-cytosine permease, very similar to Fcy2p but cannot substitute for its function /NOTE=Fcy21p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 11418581]; go_function: cytosine-purine permease activity [goid GO:0015392] [evidence ISS] [pmid 11418581]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000862 // span:87-109,119-141,154-176,196-218,225-242,257-279,300-322,393-415,424-443,458-480 // numtm:10 S0000862 // FCY21 SGDID:S0000862, Chr V from 274565-276151, Verified ORF // sgd // 11 // --- /// GENSCAN00000016853 // cdna:Genscan chromosome:SGD1:V:274565:276151:1 // ensembl // 11 // --- /// GENEFINDER00000019745 // cdna:GeneFinder chromosome:SGD1:V:274583:276151:1 // ensembl // 11 // --- /// YER060W // cdna:known chromosome:SGD1:V:274565:276151:1 gene:YER060W // ensembl // 11 // --- --- No cerevisiae_gene 1.78578757248283 -3.17088666310304 -1.10969757318791 -2.07121998161617 -1.02345776946467 Max fold change at or above threshold 4 3.17088666310304 Max fold change at or above threshold 0.881761896316067 -1.08985506518228 -0.607662805570021 0.815755974436229 308.662635803223 154.480916000237 0.500484665396043 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778424_at SPBC887.03c.S1 --- 3.17086312615861 --- --- --- --- 0.456445455551147 1.4473260641098 0.288334429264069 0.443936586380005 0.919434010982513 0.753906011581421 0.985840022563934 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC887.03c /DEF=HEAT repeat (ISS) (PMID 14970380) --- --- --- --- --- --- SPBC887.03c // |||nucleolar complex-associated protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.92752722613669 3.17086312615861 1.20663358180928 -1.58304180571206 -1.02817715312258 Max fold change at or above threshold 0 3.17086312615861 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769531_at YGL138C.S1 Hypothetical protein 3.17032370416261 9.55687499046326 7.66058301925659 --- --- --- --- 5.3908863067627 12.0840301513672 7.02971982955933 9.93027973175049 0.129638999700546 0.0461426004767418 0.0952147990465164 0.0107421996071935 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL138C /GEN=HUL5 /DB_XREF=GI:6321300 /SEG=NC_001139:-248497,249534 /DEF=Hypothetical ORF /NOTE=Ygl138cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003106 // YGL138C SGDID:S0003106, Chr VII from 249536-248499, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YGL138C // cdna:known chromosome:SGD1:VII:248499:249536:-1 gene:YGL138C // ensembl // 11 // --- --- No cerevisiae_gene 3.17032370416261 2.24156650015196 1.09428183147542 1.30400075786068 1.84204955672934 Max fold change at or above threshold 4 3.17032370416261 Max fold change at or above threshold -1.07918941970353 1.1655349808777 -0.529562864153317 0.443217302979151 8.60872900485992 2.98172187323817 0.346360289835455 APPAAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1771770_at SPAC17G6.08.S1 --- 3.17018369371354 --- --- --- --- 1.52946794033051 1.00824332237244 3.34010052680969 3.38817381858826 0.5 0.696289002895355 0.334473013877869 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G6.08 /GEN=pep7 /DEF=zinc finger protein --- --- --- --- --- --- SPAC17G6.08 // |pep7|vac1|zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.9162418136607 -1.51696312427005 3.17018369371354 2.18383167030485 2.21526305275552 Max fold change at or above threshold 2 3.17018369371354 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775876_at YMR293C.S1 protein similar to bacterial glutamyl-tRNA amidotransferases 3.16973298780606 223.02587890625 753.534606933594 --- 9060 // aerobic respiration // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from expression pattern 5739 // mitochondrion // inferred from direct assay 4040 // amidase activity // inferred from sequence similarity 683.802856445313 215.728851318359 230.322906494141 823.266357421875 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR293C /GEN=GOT1 /DB_XREF=GI:6323950 /SEG=NC_001145:-855398,856792 /DEF=protein similar to bacterial glutamyl-tRNA amidotransferases /NOTE=Ymr293cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: amidase activity [goid GO:0004040] [evidence ISS] [pmid 10592175]; go_process: aerobic respiration [goid GO:0009060] [evidence IEP,IMP] [pmid 10929718] --- --- --- --- --- --- S0004907 // YMR293C SGDID:S0004907, Chr XIII from 856792-855398, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000018960 // cdna:Genscan chromosome:SGD1:XIII:855398:856489:-1 // ensembl // 10 // --- /// GENEFINDER00000022070 // cdna:GeneFinder chromosome:SGD1:XIII:855398:856792:-1 // ensembl // 10 // --- /// YMR293C // cdna:known chromosome:SGD1:XIII:855398:856792:-1 gene:YMR293C // ensembl // 10 // --- --- No cerevisiae_gene -1.90483028604097 -3.16973298780606 1.14051683833142 -2.96888775351881 1.20395279086951 Max fold change at or above threshold 4 3.16973298780606 Max fold change at or above threshold 0.627493121540057 -0.87470252372594 -0.827865643464059 1.07507504564994 488.280242919922 311.593237939437 0.638144267472518 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777399_at YHR013C.S1 Subunit of the N-terminal acetyltransferase NatA (Nat1p, Ard1p, Nat5p); N-terminally acetylates many proteins, which influences multiple processes such as the cell cycle, heat-shock resistance, mating, sporulation, and telomeric silencing 3.16968689003876 146.228755950928 353.344345092773 ARD1 6473 // protein amino acid acetylation // traceable author statement 5737 // cytoplasm // inferred from curator /// 5830 // cytosolic ribosome (sensu Eukaryota) // inferred from direct assay 4596 // peptide alpha-N-acetyltransferase activity // traceable author statement 321.619354248047 101.467231750488 190.990280151367 385.0693359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR013C /GEN=ARD1 /DB_XREF=GI:6321801 /SEG=NC_001140:-130723,131439 /DEF=subunit of the major N alpha-acetyltransferase; complexes with Nat1p /NOTE=Ard1p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 1600941]; go_function: peptide alpha-N-acetyltransferase activity [goid GO:0004596] [evidence TAS] [pmid 1600941]; go_process: protein amino acid acetylation [goid GO:0006473] [evidence TAS] [pmid 1600941] --- --- --- --- --- --- S0001055 // ARD1 SGDID:S0001055, Chr VIII from 131439-130723, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000016565 // cdna:Genscan chromosome:SGD1:VIII:130723:131439:-1 // ensembl // 10 // --- /// GENEFINDER00000020167 // cdna:GeneFinder chromosome:SGD1:VIII:130723:131439:-1 // ensembl // 10 // --- /// YHR013C // cdna:known chromosome:SGD1:VIII:130723:131439:-1 gene:YHR013C // ensembl // 10 // --- --- No cerevisiae_gene 1.81208413880753 -3.16968689003876 1.08361569408652 -1.68395665995752 1.19728284648105 Max fold change at or above threshold 4 3.16968689003876 Max fold change at or above threshold 0.562540135801721 -1.16152461543462 -0.460447876222663 1.05943235585556 249.786550521851 127.693650914031 0.511211074604516 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
RPTR-Sc-AJ002682-2_s_at AFFX-Sc-AJ002682-2 --- 3.16952306114704 --- --- --- --- 5.87770462036133 1.85444450378418 5.32874011993408 7.72851133346558 0.633789002895355 0.904784977436066 0.567627012729645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL AJ002682 /FEA=CDS_2 /DB_XREF=CAA05685.1 GI:2623980 REMTREMBL:CAA05685 /PROD=beta-lactamase /GEN=bla --- --- --- --- --- --- AFFX-Sc-AJ002682-2 // --- // affx // --- // --- --- No No -1.53338094448466 -3.16952306114704 -1.38548082313911 -1.10301956711562 1.31488596869818 Max fold change at or above threshold 3 3.16952306114704 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778978_at SPAC1952.01.S1 --- 3.16907645713198 --- --- --- --- 8.22165679931641 8.39662456512451 2.59433841705322 6.67450284957886 0.219482004642487 0.601073980331421 0.466064006090164 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1952.01 /DEF=GPI-anchor transamidase complex (5th subunit) (predicted) --- --- --- --- --- --- SPAC1952.01 // ||SPAC1B3.19|GPI-anchor transamidase complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.53052299983525 1.02128132687595 -3.06791058751729 -3.16907645713198 -1.23180062764303 Max fold change at or above threshold 4 3.16907645713198 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771594_at SPAC328.08c.S1 --- 3.1655265500087 --- --- --- --- 12.9366130828857 12.5190382003784 7.02151155471802 9.17055225372314 0.0107421996071935 0.0375977009534836 0.129638999700546 0.00195312988944352 P P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC328.08c /DEF=chaperone activity --- --- --- --- --- --- SPAC328.08c // |||tubulin specific chaperone |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.14840505534015 -1.03335518877918 -3.1655265500087 -1.84242566320255 -1.41066892428791 Max fold change at or above threshold 4 3.1655265500087 Max fold change at or above threshold PAPAAP No 3 0 PPAP 1 3 0 No No 2 < x = 3
1773189_at SPAC2C4.05.S1 --- 3.16540935768048 --- --- --- --- 1.38648271560669 0.969397723674774 4.23721694946289 3.88237953186035 0.633789002895355 0.490234375 0.219482004642487 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2C4.05 /DEF=cornichon family --- --- --- --- --- --- SPAC2C4.05 // |||cornichon family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.28105283793009 -1.43025167250325 3.16540935768048 3.05609071196304 2.80016439307829 Max fold change at or above threshold 2 3.16540935768048 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775177_at YNL214W.S1 Peroxisomal membrane protein component of the peroxisomal translocation machinery, required for peroxisome biogenesis, binds Pex14p 3.16411084372495 127.181797027588 406.983627319336 PEX17 7031 // peroxisome organization and biogenesis // traceable author statement 5778 // peroxisomal membrane // inferred from mutant phenotype 5515 // protein binding // inferred from direct assay 374.380828857422 118.321022033691 136.042572021484 439.58642578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL214W /GEN=PEX17 /DB_XREF=GI:6324115 /SEG=NC_001146:+245616,246215 /DEF=23 kDa peroxisome associated protein, binds Pex14p /NOTE=Pex17p; go_component: peroxisomal membrane [goid GO:0005778] [evidence IMP] [pmid 9425153]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 9425153]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence TAS] --- --- --- --- --- S0005158 // span:35-54 // numtm:1 S0005158 // PEX17 SGDID:S0005158, Chr XIV from 245616-246215, Verified ORF // sgd // 11 // --- /// GENSCAN00000019870 // cdna:Genscan chromosome:SGD1:XIV:245616:246215:1 // ensembl // 11 // --- /// YNL214W // cdna:known chromosome:SGD1:XIV:245616:246215:1 gene:YNL214W // ensembl // 11 // --- --- No cerevisiae_gene -1.14467906708884 -3.16411084372495 1.27886758988698 -2.75193877397656 1.17416916652177 Max fold change at or above threshold 4 3.16411084372495 Max fold change at or above threshold 0.654727706591696 -0.907736344532472 -0.799600338614185 1.05260897655496 267.082712173462 163.882046847413 0.613600354413719 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777913_at YPL152W-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 3.16279346726931 41.7722177505493 16.9862804412842 --- --- --- --- 19.7313175201416 62.4060821533203 21.1383533477783 14.2412433624268 0.0561522990465164 0.00585938012227416 0.0952147990465164 0.0805663987994194 M P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL152W-A /GEN=RAD53 /DB_XREF=GI:33438892 /SEG=NC_001148:+264601,264699 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ypl152w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028721 // YPL152W-A SGDID:S0028721, Chr XVI from 264601-264699, Uncharacterized ORF // sgd // 11 // --- /// YPL152W-A // cdna:known chromosome:SGD1:XVI:264601:264699:1 gene:YPL152W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.18446861062742 3.16279346726931 -1.19946810083335 1.07130977575118 -1.38550525526441 Max fold change at or above threshold 4 3.16279346726931 Max fold change at or above threshold -0.434238357048133 1.48648626005597 -0.370909868314346 -0.681338034693491 29.3792490959167 22.2180547139131 0.756249917803414 MPPPAA No 4 0 MPAA 2 1 1 No No x = 1
1774833_at YLL009C.S1 Copper metallochaperone that transfers copper to Sco1p and Cox11p for eventual delivery to cytochrome c oxidase 3.16111616001179 1820.32861328125 640.369476318359 COX17 8535 // cytochrome c oxidase complex assembly // inferred from mutant phenotype /// 8535 // cytochrome c oxidase complex assembly // inferred from direct assay /// 15680 // intracellular copper ion transport // inferred from mutant phenotype /// 15680 // intracellular copper ion transport // inferred from physical interaction /// 15680 // intracellular copper ion transport // inferred from direct assay 5758 // mitochondrial intermembrane space // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 8379 // thioredoxin peroxidase activity // inferred from sequence similarity /// 16531 // copper chaperone activity // inferred from mutant phenotype /// 16531 // copper chaperone activity // inferred from physical interaction /// 16531 // copper chaperone activity // inferred from direct assay 662.869262695313 2095.40673828125 1545.25048828125 617.869689941406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL009C /GEN=COX17 /DB_XREF=GI:6323020 /SEG=NC_001144:-131204,131413 /DEF=Copper metallochaperone that shuttles copper from the cytosol to the mitochondrial intermembrane space for delivery to cytochrome c oxidase /NOTE=Cox17p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 9407107]; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence IDA] [pmid 9407107]; go_function: copper chaperone activity [goid GO:0016531] [evidence IMP,IPI] [pmid 9585572]; go_process: cytochrome c oxidase biogenesis [goid GO:0008535] [evidence IMP] [pmid 8662933]; go_process: intracellular copper ion transport [goid GO:0015680] [evidence IMP] [pmid 8662933]; go_process: intracellular copper ion transport [goid GO:0015680] [evidence IPI] [pmid 9585572] --- --- --- --- --- --- S0003932 // COX17 SGDID:S0003932, Chr XII from 131413-131204, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024702 // cdna:GeneFinder chromosome:SGD1:XII:131204:131413:-1 // ensembl // 11 // --- /// YLL009C // cdna:known chromosome:SGD1:XII:131204:131413:-1 gene:YLL009C // ensembl // 11 // --- --- No cerevisiae_gene 1.148566311709 3.16111616001179 1.62106653039239 2.33115423394058 -1.07283019945221 Max fold change at or above threshold 4 3.16111616001179 Max fold change at or above threshold -0.790852871393472 1.20556429036769 0.438853891604183 -0.853565310578404 1230.3490447998 717.554178066776 0.583211878856322 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780069_at YKR005C.S1 Hypothetical protein 3.16084736563211 81.9298400878906 257.004249572754 --- --- --- --- 224.816329956055 71.1253356933594 92.7343444824219 289.192169189453 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR005C /GEN=ECM9 /DB_XREF=GI:6322857 /SEG=NC_001143:-448164,449507 /DEF=Hypothetical ORF /NOTE=Ykr005cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001713 // span:371-393 // numtm:1 S0001713 // YKR005C SGDID:S0001713, Chr XI from 449507-448164, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018421 // cdna:Genscan chromosome:SGD1:XI:448164:449507:-1 // ensembl // 11 // --- /// GENEFINDER00000023149 // cdna:GeneFinder chromosome:SGD1:XI:448164:449507:-1 // ensembl // 11 // --- /// YKR005C // cdna:known chromosome:SGD1:XI:448164:449507:-1 gene:YKR005C // ensembl // 11 // --- --- No cerevisiae_gene -1.13873951538681 -3.16084736563211 -1.50444720595833 -2.42430494560372 1.28634859062944 Max fold change at or above threshold 4 3.16084736563211 Max fold change at or above threshold 0.528081712154484 -0.938267911126131 -0.73209862938442 1.14228482835607 169.467044830322 104.811971048792 0.618479959650766 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770900_at YCR091W.S1 Putative serine/threonine protein kinase, most similar to cyclic nucleotide-dependent protein kinase subfamily and the protein kinase C subfamily 3.15826004752471 1201.06140136719 938.639190673828 KIN82 6468 // protein amino acid phosphorylation // inferred from sequence similarity /// 19236 // response to pheromone // inferred from genetic interaction --- 4672 // protein kinase activity // inferred from sequence similarity 883.742614746094 1312.84216308594 1089.28063964844 993.535766601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR091W /GEN=KIN82 /DB_XREF=GI:10383810 /SEG=NC_001135:+274400,276562 /DEF=Putative serine/threonine protein kinase most similar to cyclic nucleotide-dependent protein kinase subfamily and the protein kinase C subfamily /NOTE=Kin82p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 1580103]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence ISS] [pmid 1580103]; go_process: response to pheromone [goid GO:0019236] [evidence IGI] [pmid 11337509] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-65 /// hanks // 1.8.7 // AGC group; AGC VIII Flowering plant PVPK1 homologs; PsPK5 // 4.0E-94 --- --- S0000687 // KIN82 SGDID:S0000687, Chr III from 274400-276562, Verified ORF // sgd // 11 // --- /// GENSCAN00000022522 // cdna:Genscan chromosome:SGD1:III:274400:276562:1 // ensembl // 11 // --- /// GENEFINDER00000023351 // cdna:GeneFinder chromosome:SGD1:III:274934:276562:1 // ensembl // 11 // --- /// YCR091W // cdna:known chromosome:SGD1:III:274400:276562:1 gene:YCR091W // ensembl // 11 // --- --- No cerevisiae_gene -3.15826004752471 1.48554810097409 1.59268494704729 1.23257679495449 1.12423657072033 Max fold change at or above threshold 4 3.15826004752471 Max fold change at or above threshold -1.0199528329021 1.33170346053647 0.106486921398728 -0.418237549033097 1069.85029602051 182.466948736127 0.170553720847528 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771131_at SPCC895.05.S1 --- 3.15813197640731 --- --- --- --- 0.506225407123566 0.263954669237137 0.606603145599365 0.16029267013073 0.969726979732513 0.991943001747131 0.943848013877869 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC895.05 /GEN=for3 /DEF=formin --- --- --- --- --- --- SPCC895.05 // |for3||formin|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.0888402556772 -1.91784979059708 -1.6369706344566 1.19828664674529 -3.15813197640731 Max fold change at or above threshold 0 3.15813197640731 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771565_at YDR184C.S1 Nuclear protein, possibly involved in regulation of cation stress responses and/or in the establishment of bipolar budding pattern 3.15803591757307 114.50895690918 326.911682128906 ATC1 6950 // response to stress // inferred from genetic interaction /// 7121 // bipolar bud site selection // inferred from genetic interaction 5634 // nucleus // inferred from direct assay --- 315.774871826172 129.027008056641 99.9909057617188 338.048492431641 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR184C /GEN=ATC1 /DB_XREF=GI:6320390 /SEG=NC_001136:-830622,831506 /DEF=Nuclear protein, possibly involved in regulation of cation stress responses and/or in the establishment of bipolar budding pattern /NOTE=Atc1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10102375]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: polar budding [goid GO:0007121] [evidence IGI] [pmid 11065362]; go_process: response to stress [goid GO:0006950] [evidence IGI] [pmid 10102375] --- --- --- --- --- --- S0002592 // ATC1 SGDID:S0002592, Chr IV from 831508-830624, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023788 // cdna:GeneFinder chromosome:SGD1:IV:830624:831508:-1 // ensembl // 10 // --- /// GENSCAN00000025238 // cdna:Genscan chromosome:SGD1:IV:830624:831508:-1 // ensembl // 10 // --- /// YDR184C // cdna:known chromosome:SGD1:IV:830624:831508:-1 gene:YDR184C // ensembl // 10 // --- --- No cerevisiae_gene 1.0392036153161 -2.447354833552 -1.49762355113401 -3.15803591757307 1.07053639346493 Max fold change at or above threshold 4 3.15803591757307 Max fold change at or above threshold 0.769519962581502 -0.742149799201288 -0.977188620814982 0.949818457434768 220.710319519043 123.537473918437 0.559726768497465 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777857_at YPL014W.S1 Hypothetical protein 3.15474975229539 527.736541748047 196.395004272461 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 192.332931518555 448.710815429688 606.762268066406 200.457077026367 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL014W /GEN=HST2 /DB_XREF=GI:6325243 /SEG=NC_001148:+527542,528687 /DEF=Hypothetical ORF /NOTE=Ypl014wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005935 // YPL014W SGDID:S0005935, Chr XVI from 527544-528689, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017174 // cdna:Genscan chromosome:SGD1:XVI:527544:528689:1 // ensembl // 11 // --- /// YPL014W // cdna:known chromosome:SGD1:XVI:527544:528689:1 gene:YPL014W // ensembl // 11 // --- --- No cerevisiae_gene 2.41751212302746 2.33299004952982 -1.33282454758867 3.15474975229539 1.04224001289674 Max fold change at or above threshold 4 3.15474975229539 Max fold change at or above threshold -0.84061069558008 0.429114063823221 1.21187207559487 -0.800375443838006 362.065773010254 201.916109780844 0.55767798237898 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773498_at YJR010W.S1 ATP sulfurylase, catalyzes the primary step of intracellular sulfate activation, essential for assimilatory reduction of sulfate to sulfide, involved in methionine metabolism 3.1544748972002 310.43701171875 941.46728515625 MET3 103 // sulfate assimilation // traceable author statement /// 6555 // methionine metabolism // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4781 // sulfate adenylyltransferase (ATP) activity // traceable author statement 924.019226074219 292.923309326172 327.950714111328 958.915344238281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR010W /GEN=MET3 /DB_XREF=GI:6322469 /SEG=NC_001142:+456153,457688 /DEF=ATP sulfurylase, catalyzes the primary step of intracellular sulfate activation, essential for assimilatory reduction of sulfate to sulfide, involved in methionine metabolism /NOTE=Met3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: sulfate adenylyltransferase (ATP) activity [goid GO:0004781] [evidence TAS] [pmid 197388]; go_process: methionine metabolism [goid GO:0006555] [evidence IMP] [pmid 197388]; go_process: sulfate assimilation [goid GO:0000103] [evidence TAS] [pmid 197388] --- --- --- --- --- --- S0003771 // MET3 SGDID:S0003771, Chr X from 456153-457688, Verified ORF // sgd // 11 // --- /// GENSCAN00000024142 // cdna:Genscan chromosome:SGD1:X:456153:457688:1 // ensembl // 11 // --- /// GENEFINDER00000024305 // cdna:GeneFinder chromosome:SGD1:X:456153:457688:1 // ensembl // 11 // --- /// YJR010W // cdna:known chromosome:SGD1:X:456153:457688:1 gene:YJR010W // ensembl // 11 // --- --- No cerevisiae_gene -1.16471213571999 -3.1544748972002 -1.11252825756169 -2.81755515787822 1.03776557584448 Max fold change at or above threshold 4 3.1544748972002 Max fold change at or above threshold 0.816881195468017 -0.912697230353475 -0.816701293727713 0.912517328613172 625.9521484375 364.884244233272 0.582926738320325 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772653_at SPAC17G6.13.S1 --- 3.15280362497121 --- --- --- --- 4.05652904510498 3.70758032798767 3.82318949699402 1.28664183616638 0.432372987270355 0.567627012729645 0.432372987270355 0.525634765625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G6.13 /GEN=slt1 /DEF=involved in response to drug --- --- --- --- --- --- X86009 // S.pombe mRNA for SLT1 gene. // gb // 10 // --- /// SPAC17G6.13 // |slt1||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.13932702319623 -1.09411764176306 -1.13785346265771 -1.06103269228335 -3.15280362497121 Max fold change at or above threshold 3 3.15280362497121 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780140_at SPCC320.13c.S1 --- 3.15262995996067 --- --- --- --- 14.3288116455078 18.5262145996094 4.54503440856934 15.4434442520142 0.171387001872063 0.466064006090164 0.533936023712158 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC320.13c /GEN=ark1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPCC320.13c // |ark1|aim1, SPCC330.16|chromosomal passenger proteins aurora-B kinase Ark1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.01563330291262 1.2929344776067 -1.21901118491601 -3.15262995996067 1.07778960559202 Max fold change at or above threshold 4 3.15262995996067 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1774794_at SPCC830.03.S1 --- 3.15232810521269 --- --- --- --- 4.01517629623413 9.11565399169922 9.31233406066895 7.81290435791016 0.432372987270355 0.0461426004767418 0.00805663969367743 0.0375977009534836 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC830.03 /DEF=AAA family ATPase (inferred from context) --- --- --- --- --- --- SPCC830.03 // |||AAA family ATPase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.15232810521269 2.27029981230186 1.20363793556984 2.31928397998441 1.945843415453 Max fold change at or above threshold 4 3.15232810521269 Max fold change at or above threshold AAPPPP No 4 0 APPP 1 3 0 No No 2 < x = 3
1778741_at SPAC521.05.S1 --- 3.15204249782835 --- --- --- --- 3.36493611335754 2.40299940109253 2.63458395004272 1.06754148006439 0.334473013877869 0.753906011581421 0.850341975688934 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC521.05 /GEN=rps802 /DEF=40S ribosomal protein S8 --- --- --- --- --- --- SPAC521.05 // |rps802|rps8-2|40S ribosomal protein S8|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.82860219937344 -1.40030667998821 -1.54912464735034 -1.27721726738029 -3.15204249782835 Max fold change at or above threshold 2 3.15204249782835 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769845_at YHL032C.S1 Glycerol kinase, converts glycerol to glycerol-3-phosphate; glucose repression of expression is mediated by Adr1p and Ino2p-Ino4p; derepression of expression on non-fermentable carbon sources is mediated by Opi1p and Rsf1p 3.15150719062514 4201.46643066406 1374.02764892578 GUT1 6071 // glycerol metabolism // traceable author statement 5737 // cytoplasm // inferred from direct assay 4370 // glycerol kinase activity // inferred from mutant phenotype /// 4370 // glycerol kinase activity // inferred from sequence similarity 1403.27062988281 3980.51538085938 4422.41748046875 1344.78466796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL032C /GEN=GUT1 /DB_XREF=GI:6321755 /SEG=NC_001140:-36377,38506 /DEF=Glycerol kinase, converts glycerol to glycerol-3-phosphate; glucose repression of expression is mediated by Adr1p and Ino2p-Ino4p; derepression of expression on non-fermentable carbon sources is mediated by Opi1p and Rsf1p /NOTE=Gut1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: glycerol kinase activity [goid GO:0004370] [evidence IMP,ISS] [pmid 8358828]; go_process: glycerol metabolism [goid GO:0006071] [evidence TAS] [pmid 8358828] --- --- --- --- --- --- S0001024 // GUT1 SGDID:S0001024, Chr VIII from 38506-36377, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016524 // cdna:Genscan chromosome:SGD1:VIII:36377:38395:-1 // ensembl // 11 // --- /// GENEFINDER00000020284 // cdna:GeneFinder chromosome:SGD1:VIII:36377:38395:-1 // ensembl // 11 // --- /// YHL032C // cdna:known chromosome:SGD1:VIII:36377:38506:-1 gene:YHL032C // ensembl // 11 // --- --- No cerevisiae_gene -1.32643182053674 2.83659851214287 1.69841242639679 3.15150719062514 -1.04349094937437 Max fold change at or above threshold 4 3.15150719062514 Max fold change at or above threshold -0.842890289348091 0.726175502108326 0.995212219481446 -0.878497432241681 2787.74703979492 1642.53453552406 0.589197840434222 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778790_at YOR330C.S1 Catalytic subunit of the mitochondrial DNA polymerase 3.15095671673291 333.276504516602 690.792266845703 MIP1 6261 // DNA-dependent DNA replication // inferred from mutant phenotype /// 6261 // DNA-dependent DNA replication // inferred from direct assay /// 6264 // mitochondrial DNA replication // inferred from direct assay 5739 // mitochondrion // inferred from direct assay 3895 // gamma DNA-directed DNA polymerase activity // traceable author statement 623.073852539063 362.581909179688 303.971099853516 758.510681152344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR330C /GEN=MIP1 /DB_XREF=GI:6324906 /SEG=NC_001147:-939616,943458 /DEF=catalytic subunit of mitochondrial DNA polymerase /NOTE=Mip1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 10567545]; go_function: gamma DNA-directed DNA polymerase activity [goid GO:0003895] [evidence TAS] [pmid 9745046]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence IDA] [pmid 12023279]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence IMP] [pmid 2684980] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 1.5 --- S0005857 // MIP1 SGDID:S0005857, Chr XV from 943458-939616, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017783 // cdna:Genscan chromosome:SGD1:XV:939616:943380:-1 // ensembl // 11 // --- /// GENEFINDER00000022728 // cdna:GeneFinder chromosome:SGD1:XV:939616:943458:-1 // ensembl // 11 // --- /// YOR330C // cdna:known chromosome:SGD1:XV:939616:943458:-1 gene:YOR330C // ensembl // 11 // --- --- No cerevisiae_gene -3.15095671673291 -1.71843612922861 -1.12480200022742 -2.04977990617964 1.21736882082496 Max fold change at or above threshold 4 3.15095671673291 Max fold change at or above threshold 0.516403615051211 -0.695048358278521 -0.967625619981721 1.14627036320903 512.034385681152 215.024573069455 0.419941666189881 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776780_at SPBC582.03.S1 --- 3.14997779479594 --- --- --- --- 5.47654581069946 5.89979362487793 4.90157604217529 1.73859822750092 0.390625 0.334473013877869 0.366210997104645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC582.03 /GEN=cdc13 /DEF=cyclin --- --- --- --- --- --- SPBC582.03 // |cdc13||cyclin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.01494840090481 1.07728371656302 -1.39978865110937 -1.11730303958908 -3.14997779479594 Max fold change at or above threshold 3 3.14997779479594 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777907_at SPCC1494.08c.S1 --- 3.14989257775188 --- --- --- --- 1.40537321567535 0.461027801036835 0.631937086582184 0.446165442466736 0.5 0.780517995357513 0.888427972793579 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1494.08c /DEF=hypothetical protein --- --- --- --- --- --- SPCC1494.08c // |||hypothetical protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.66288456522431 -3.04834808771775 -2.90626047326751 -2.22391317983295 -3.14989257775188 Max fold change at or above threshold 0 3.14989257775188 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775903_at SPAC10F6.07c.S1 --- 3.14940430600502 --- --- --- --- 4.86508464813232 3.23918104171753 5.09147548675537 1.75522804260254 0.432372987270355 0.274170011281967 0.0561522990465164 0.432372987270355 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC10F6.07c /DEF=sequence orphan --- --- --- --- --- --- SPAC10F6.07c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.14940430600502 -1.50194897582899 -2.65016469010189 1.04653379231746 -2.77176784443273 Max fold change at or above threshold 3 3.14940430600502 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1777848_at SPBC2D10.05.S1 --- 3.14899969919136 --- --- --- --- 0.611484885215759 1.92556571960449 0.967734158039093 0.69570404291153 0.953857004642487 0.888427972793579 0.932372987270355 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2D10.05 /GEN=exg3 /DEF=glucan 1,3-beta-glucosidase --- --- --- --- --- --- SPBC2D10.05 // |exg3||glucan 1,3-beta-glucosidase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 3.01822806753164 3.14899969919136 1.54632199546662 1.58259702150714 1.13772892794571 Max fold change at or above threshold 0 3.14899969919136 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775866_at YDR299W.S1 Essential protein possibly involved in secretion; multicopy suppressor of sensitivity to Brefeldin A 3.14773739155423 182.719100952148 236.120079040527 BFR2 6888 // ER to Golgi transport // inferred from genetic interaction 5730 // nucleolus // inferred from direct assay --- 229.175689697266 182.174713134766 183.263488769531 243.064468383789 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR299W /GEN=BFR2 /DB_XREF=GI:6320505 /SEG=NC_001136:+1059619,1061223 /DEF=involved in protein transport step at the Brefeldin A blocks /NOTE=Bfr2p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IGI] [pmid 9472076] --- --- --- --- --- --- S0002707 // BFR2 SGDID:S0002707, Chr IV from 1059621-1061225, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023869 // cdna:GeneFinder chromosome:SGD1:IV:1059621:1061225:1 // ensembl // 11 // --- /// GENSCAN00000025330 // cdna:Genscan chromosome:SGD1:IV:1060272:1061225:1 // ensembl // 11 // --- /// YDR299W // cdna:known chromosome:SGD1:IV:1059621:1061225:1 gene:YDR299W // ensembl // 11 // --- --- No cerevisiae_gene 3.14773739155423 -1.25799945422574 -1.13235330927378 -1.25052562971489 1.06060319357987 Max fold change at or above threshold 4 3.14773739155423 Max fold change at or above threshold 0.63015310480965 -0.869019897873371 -0.834291618654551 1.07315841171827 209.419589996338 31.3512693187403 0.149705523343296 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778227_at YDL079C.S1 Glycogen synthase kinase 3 (GSK-3) homolog; one of four GSK-3 homologs in S. cerevisiae that function to activate Msn2p-dependent transcription of stress responsive genes and that function in protein degradation 3.14691546567007 3237.24035644531 1206.94171142578 MRK1 6468 // protein amino acid phosphorylation // inferred from genetic interaction /// 6468 // protein amino acid phosphorylation // inferred from sequence similarity /// 6950 // response to stress // inferred from genetic interaction /// 6950 // response to stress // inferred from mutant phenotype /// 42176 // regulation of protein catabolism // inferred from genetic interaction --- 4696 // glycogen synthase kinase 3 activity // inferred from genetic interaction /// 4696 // glycogen synthase kinase 3 activity // inferred from sequence similarity 1124.79150390625 3539.62377929688 2934.85693359375 1289.09191894531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL079C /GEN=MRK1 /DB_XREF=GI:6320124 /SEG=NC_001136:-312951,314748 /DEF=putative protein kinase with similarity to mammalian glycogen synthase kinase-3 and Drosophila Zeste-White3/Shaggy /NOTE=Mrk1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: glycogen synthase kinase 3 activity [goid GO:0004696] [evidence IGI,ISS] [pmid 10958669]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IGI,ISS] [pmid 10958669]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence IGI] [pmid 10958669]; go_process: response to stress [goid GO:0006950] [evidence IGI,IMP] [pmid 12529445] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-72 /// hanks // 3.1.7 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; PCTAIRE1 // 9.0E-71 --- --- S0002237 // MRK1 SGDID:S0002237, Chr IV from 314748-314337,314044-312951, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023714 // cdna:GeneFinder chromosome:SGD1:IV:312951:314078:-1 // ensembl // 11 // --- /// GENSCAN00000025042 // cdna:Genscan chromosome:SGD1:IV:312951:314078:-1 // ensembl // 11 // --- /// YDL079C // cdna:known chromosome:SGD1:IV:312951:314748:-1 gene:YDL079C // ensembl // 11 // --- --- No cerevisiae_gene 2.24628609555677 3.14691546567007 -1.07714971883239 2.60924528981717 1.14607188485019 Max fold change at or above threshold 4 3.14691546567007 Max fold change at or above threshold -0.9145770419487 1.09813698807557 0.594076011400368 -0.77763595752724 2222.09103393555 1199.78906062552 0.539936952313143 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771220_at YKL033W.S1 Protein of unknown function; localized to the cytoplasm. 3.14661205288355 123.474941253662 389.144577026367 --- --- 5737 // cytoplasm // inferred from direct assay --- 360.543640136719 114.581535339355 132.368347167969 417.745513916016 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL033W /GEN=TUL1 /DB_XREF=GI:6322819 /SEG=NC_001143:+375099,378215 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ykl033wp --- --- --- --- --- --- S0001516 // FMP47 SGDID:S0001516, Chr XI from 375099-378215, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018394 // cdna:Genscan chromosome:SGD1:XI:375099:378215:1 // ensembl // 11 // --- /// GENEFINDER00000023152 // cdna:GeneFinder chromosome:SGD1:XI:375099:378215:1 // ensembl // 11 // --- /// YKL033W // cdna:known chromosome:SGD1:XI:375099:378215:1 gene:YKL033W // ensembl // 11 // --- --- No cerevisiae_gene -1.04431086170297 -3.14661205288355 1.21904889111444 -2.72379045180044 1.15865450783602 Max fold change at or above threshold 4 3.14661205288355 Max fold change at or above threshold 0.671083473640849 -0.912481314440373 -0.797965426201314 1.03936326700084 256.309759140015 155.321782000086 0.605992462094421 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772949_at YIL046W-A.S1 Identified by expression profiling and mass spectrometry 3.14645043738548 241.336822509766 103.46443939209 --- --- --- --- 88.7195129394531 279.151550292969 203.522094726563 118.209365844727 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL046W-A /GEN=SYG1 /DB_XREF=GI:33438815 /SEG=NC_001141:+268308,268472 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Yil046w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028836 // span:21-43 // numtm:1 S0028836 // YIL046W-A SGDID:S0028836, Chr IX from 268308-268472, Uncharacterized ORF // sgd // 9 // --- /// YIL046W-A // cdna:known chromosome:SGD1:IX:268308:268472:1 gene:YIL046W-A // ensembl // 9 // --- --- No cerevisiae_gene 2.42728472898474 3.14645043738548 1.36453201250292 2.29399472543832 1.33239421552504 Max fold change at or above threshold 4 3.14645043738548 Max fold change at or above threshold -0.97051293491412 1.23807079180298 0.360939048921086 -0.628496905809943 172.400630950928 86.223598883697 0.500135054077846 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772862_s_at SPAC750.04c.S1 --- 3.14535251470401 --- --- --- --- 1.73217737674713 1.15556907653809 1.59980952739716 0.570493876934052 0.688720703125 0.805419981479645 0.432372987270355 0.79931640625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC750.04c /DEF=B44484 --- --- --- --- --- --- SPAC750.04c // ||SPAC1348.03|B44484|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPBC1348.03 // ||SPAC1348.03|B44484|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPAC977.02 // |||telomeric duplication|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPBPB2B2.17c // ||SPAC1348.03|B44484|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.69955545432353 -1.49898211358898 3.14535251470401 -1.08273975562912 -3.03627689407676 Max fold change at or above threshold 0 3.14535251470401 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770432_at SPAC11E3.02c.S1 --- 3.14453202913605 --- --- --- --- 4.8281078338623 1.54017984867096 8.3820915222168 1.53539788722992 0.432372987270355 0.533936023712158 0.334473013877869 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11E3.02c /DEF=C2 domain --- --- --- --- --- --- SPAC11E3.02c // |||C2 domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.4807477840604 -3.13476886353794 1.23085326266662 1.7361027985805 -3.14453202913605 Max fold change at or above threshold 2 3.14453202913605 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771915_at YGL062W.S1 Pyruvate carboxylase isoform, cytoplasmic enzyme that converts pyruvate to oxaloacetate; highly similar to isoform Pyc2p but differentially regulated; mutations in the human homolog are associated with lactic acidosis 3.14446623103916 6730.65844726563 2524.02941894531 PYC1 6094 // gluconeogenesis // inferred from mutant phenotype /// 6740 // NADPH regeneration // traceable author statement 5829 // cytosol // inferred from direct assay 4736 // pyruvate carboxylase activity // inferred from direct assay /// 4736 // pyruvate carboxylase activity // inferred from mutant phenotype 2598.54736328125 8171.04443359375 5290.2724609375 2449.51147460938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL062W /GEN=PYC1 /DB_XREF=GI:6321376 /SEG=NC_001139:+385197,388733 /DEF=converts pyruvate to oxaloacetate /NOTE=Pyc1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 2039506]; go_function: pyruvate carboxylase activity [goid GO:0004736] [evidence IDA,IMP] [pmid 2039506]; go_process: NADPH regeneration [goid GO:0006740] [evidence TAS]; go_process: gluconeogenesis [goid GO:0006094] [evidence TAS] --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 2.40000009536743 --- S0003030 // PYC1 SGDID:S0003030, Chr VII from 385199-388735, Verified ORF // sgd // 10 // --- /// GENSCAN00000019299 // cdna:Genscan chromosome:SGD1:VII:385199:388735:1 // ensembl // 10 // --- /// GENEFINDER00000021470 // cdna:GeneFinder chromosome:SGD1:VII:385199:388735:1 // ensembl // 10 // --- /// YGL062W // cdna:known chromosome:SGD1:VII:385199:388735:1 gene:YGL062W // ensembl // 10 // --- --- No cerevisiae_gene 1.18219097771911 3.14446623103916 1.18828381241397 2.03585762402935 -1.06084310696917 Max fold change at or above threshold 4 3.14446623103916 Max fold change at or above threshold -0.751642334654518 1.31289423351804 0.245606264215994 -0.806858163079516 4627.34393310547 2699.15154626931 0.583304717628344 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778341_at SPBP8B7.20c.S1 --- 3.14438001783682 --- --- --- --- 1.21008312702179 2.61322832107544 3.80496120452881 2.63705563545227 0.828612983226776 0.274170011281967 0.0676269978284836 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.20c /DEF=methyltransferase (predicted) --- --- --- --- --- --- SPBP8B7.20c // |||methyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.78328185848899 2.15954446659133 -1.25865236371013 3.14438001783682 2.17923510919658 Max fold change at or above threshold 3 3.14438001783682 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773584_at SPBC21.03c.S1 --- 3.1440232145609 --- --- --- --- 2.5330057144165 0.80565744638443 1.42136788368225 1.284383893013 0.533936023712158 0.780517995357513 0.466064006090164 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21.03c /DEF=similar to gene expressed in hematopoietic stemprogenitor cells from Myelodysplastic Syndrome --- --- --- --- --- --- SPBC21.03c // |||DUF589|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.32164006983515 -3.1440232145609 1.64665975665359 -1.78209015659929 -1.97215624409178 Max fold change at or above threshold 1 3.1440232145609 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773254_at YKL209C.S1 ATP-binding cassette (ABC) transporter required for the export of a-factor, catalyzes ATP hydrolysis coupled to a-factor transport, contains 12 transmembrane domains and two ATP binding domains, expressed only in MATa cells 3.14391989902338 111.828872680664 47.5011787414551 STE6 770 // peptide pheromone export // traceable author statement 5887 // integral to plasma membrane // traceable author statement /// 43332 // mating projection tip // inferred from direct assay 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from direct assay /// 42626 // ATPase activity, coupled to transmembrane movement of substances // traceable author statement 37.5906448364258 105.475769042969 118.181976318359 57.4117126464844 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL209C /GEN=STE6 /DB_XREF=GI:6322640 /SEG=NC_001143:-42424,46296 /DEF=ABC transporter, glycoprotein, component of a-factor secretory pathway /NOTE=Ste6p; go_component: integral to plasma membrane [goid GO:0005887] [evidence TAS] [pmid 8095825]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 12374868]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence IDA] [pmid 11389139]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence TAS] [pmid 8095825]; go_process: peptide pheromone export [goid GO:0000770] [evidence TAS] [pmid 8095825] --- --- --- --- --- S0001692 // span:26-48,77-99,170-192,256-278,716-738,762-784,837-859,864-886,943-965,980-1002 // numtm:10 S0001692 // STE6 SGDID:S0001692, Chr XI from 46296-42424, reverse complement, Verified ORF // sgd // 11 // --- /// YKL209C // cdna:known chromosome:SGD1:XI:42424:46296:-1 gene:YKL209C // ensembl // 11 // --- GENEFINDER00000023137 // ensembl // 1 // Cross Hyb Matching Probes No cerevisiae_gene 1.53501677768236 2.80590475374771 1.66589680583697 3.14391989902338 1.52728725182314 Max fold change at or above threshold 4 3.14391989902338 Max fold change at or above threshold -1.09673703890241 0.672798924791177 1.0040068440334 -0.580068729922169 79.6650257110596 38.3632351076071 0.481556803191758 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772775_at SPBP8B7.16c.S1 --- 3.14309380252881 --- --- --- --- 7.25926876068115 18.7846984863281 22.8165626525879 3.6600513458252 0.213134765625 0.171387001872063 0.0805663987994194 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.16c /GEN=dbp2 /DEF=DEADDEAH box helicase --- --- --- --- --- --- L11574 // Schizosaccharomyces pombe p68 RNA helicase (dbp2) mRNA, complete cds. // gb // 11 // --- /// SPBP8B7.16c // |dbp2||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.54692215276222 2.58768466984897 -2.03578873425991 3.14309380252881 -1.98337894056087 Max fold change at or above threshold 4 3.14309380252881 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771426_at YNL049C.S1 Probable component of COPII coated vesicles that binds to Sec23p; similar to and functionally redundant with Sec24p, but expressed at low levels; involved in ER to Golgi transport and in autophagy 3.14260988273978 238.292358398438 775.923950195313 SFB2 6888 // ER to Golgi transport // inferred from genetic interaction 30127 // COPII vesicle coat // inferred from physical interaction --- 729.639343261719 244.408477783203 232.176239013672 822.208557128906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL049C /GEN=SFB2 /DB_XREF=GI:6324279 /SEG=NC_001146:-535279,537909 /DEF=Probable component of COPII coated vesicles that binds to Sec23p; similar to and functionally redundant with Sec24p, but expressed at low levels; involved in ER to Golgi transport and in autophagy /NOTE=Sfb2p; go_component: COPII vesicle coat [goid GO:0030127] [evidence IPI] [pmid 10749860]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IGI] [pmid 10749860] --- --- --- --- --- --- S0004994 // SFB2 SGDID:S0004994, Chr XIV from 537910-535280, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019995 // cdna:Genscan chromosome:SGD1:XIV:535280:537910:-1 // ensembl // 11 // --- /// GENEFINDER00000020572 // cdna:GeneFinder chromosome:SGD1:XIV:535280:537910:-1 // ensembl // 11 // --- /// YNL049C // cdna:known chromosome:SGD1:XIV:535280:537910:-1 gene:YNL049C // ensembl // 11 // --- --- No cerevisiae_gene -1.95423609103445 -2.98532747259663 1.08286464301754 -3.14260988273978 1.12686982236097 Max fold change at or above threshold 4 3.14260988273978 Max fold change at or above threshold 0.711567701499771 -0.840010813185825 -0.879124728255083 1.00756783994114 507.108154296875 312.733684364558 0.616700168819363 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769698_at YMR227C.S1 TFIID subunit (67 kDa), involved in RNA polymerase II transcription initiation 3.14204553445343 113.843685150146 268.514633178711 TAF7 114 // G1-specific transcription in mitotic cell cycle // inferred from physical interaction /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement 5634 // nucleus // inferred from direct assay /// 5669 // transcription factor TFIID complex // traceable author statement /// 5669 // transcription factor TFIID complex // inferred from direct assay 16251 // general RNA polymerase II transcription factor activity // traceable author statement 277.835266113281 88.4249649047852 139.262405395508 259.194000244141 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR227C /GEN=TAF7 /DB_XREF=GI:6323883 /SEG=NC_001145:-722612,724384 /DEF=TFIID subunit (67 kDa), involved in RNA polymerase II transcription initiation /NOTE=Taf7p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_component: transcription factor TFIID complex [goid GO:0005669] [evidence TAS] [pmid 9118213]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9118213]; go_process: G1-specific transcription in mitotic cell cycle [goid GO:0000114] [evidence IPI] [pmid 9118213]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 9118213] --- --- --- --- --- --- S0004840 // TAF7 SGDID:S0004840, Chr XIII from 724384-722612, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018907 // cdna:Genscan chromosome:SGD1:XIII:722612:724384:-1 // ensembl // 11 // --- /// GENEFINDER00000021985 // cdna:GeneFinder chromosome:SGD1:XIII:722612:724384:-1 // ensembl // 11 // --- /// YMR227C // cdna:known chromosome:SGD1:XIII:722612:724384:-1 gene:YMR227C // ensembl // 11 // --- --- No cerevisiae_gene -2.66846614078604 -3.14204553445343 1.1149069441854 -1.99504859422917 -1.07192012875137 Max fold change at or above threshold 4 3.14204553445343 Max fold change at or above threshold 0.941968494651 -1.11695778974888 -0.564345065994505 0.739334361092384 191.179159164429 91.9946977430054 0.481196267130158 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770458_at YOR032C.S1 C2H2 zinc-finger protein with similarity to myc-family transcription factors; overexpression confers hyperfilamentous growth and suppresses the pseudohyphal filamentation defect of a diploid mep1 mep2 homozygous null mutant 3.14178933557785 1877.26434326172 584.623840332031 HMS1 7124 // pseudohyphal growth // inferred from genetic interaction --- 3700 // transcription factor activity // inferred from sequence similarity 597.739685058594 1876.55651855469 1877.97216796875 571.507995605469 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR032C /GEN=HMS1 /DB_XREF=GI:6324606 /SEG=NC_001147:-389770,391074 /DEF=C2H2 zinc-finger protein with similarity to myc-family transcription factors; overexpression confers hyperfilamentous growth and suppresses the pseudohyphal filamentation defect of a diploid mep1 mep2 homozygous null mutant /NOTE=Hms1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: transcription factor activity [goid GO:0003700] [evidence ISS] [pmid 9171100]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IGI] [pmid 9832522] --- --- --- --- --- --- S0005558 // HMS1 SGDID:S0005558, Chr XV from 391074-389770, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017487 // cdna:Genscan chromosome:SGD1:XV:389770:391074:-1 // ensembl // 11 // --- /// GENEFINDER00000022542 // cdna:GeneFinder chromosome:SGD1:XV:389770:391074:-1 // ensembl // 11 // --- /// YOR032C // cdna:known chromosome:SGD1:XV:389770:391074:-1 gene:YOR032C // ensembl // 11 // --- --- No cerevisiae_gene 2.01450818702087 3.13942099790603 1.3019536590429 3.14178933557785 -1.04589907692426 Max fold change at or above threshold 4 3.14178933557785 Max fold change at or above threshold -0.848363468314148 0.864987659154677 0.866884337753326 -0.883508528593855 1230.94409179688 746.38339625417 0.606350362480423 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780030_at YER077C.S1 Hypothetical protein 3.1407391923915 160.614952087402 495.124923706055 --- --- 5739 // mitochondrion // inferred from direct assay --- 458.083587646484 145.852157592773 175.377746582031 532.166259765625 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER077C /GEN=PTP3 /DB_XREF=GI:6320921 /SEG=NC_001137:-314530,316596 /DEF=Hypothetical ORF /NOTE=Yer077cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000879 // YER077C SGDID:S0000879, Chr V from 316596-314530, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016867 // cdna:Genscan chromosome:SGD1:V:314530:316485:-1 // ensembl // 11 // --- /// GENEFINDER00000019712 // cdna:GeneFinder chromosome:SGD1:V:314530:316596:-1 // ensembl // 11 // --- /// YER077C // cdna:known chromosome:SGD1:V:314530:316596:-1 gene:YER077C // ensembl // 11 // --- --- No cerevisiae_gene -1.18882325095552 -3.1407391923915 -1.2414432698944 -2.61198240126902 1.16172304382211 Max fold change at or above threshold 4 3.1407391923915 Max fold change at or above threshold 0.664848999863099 -0.929352179475429 -0.778599486899789 1.04310266651212 327.869937896729 195.85447188244 0.597354161649703 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776234_at YDR284C.S1 Diacylglycerol pyrophosphate (DGPP) phosphatase, zinc-regulated vacuolar membrane-associated lipid phosphatase, dephosphorylates DGPP to phosphatidate (PA) and Pi, then PA to diacylglycerol; involved in lipid signaling and cell metabolism 3.139769000626 722.779052734375 2191.78698730469 DPP1 6644 // phospholipid metabolism // inferred from mutant phenotype /// 7165 // signal transduction // traceable author statement 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 329 // vacuolar membrane (sensu Fungi) // traceable author statement 810 // diacylglycerol pyrophosphate phosphatase activity // inferred from mutant phenotype /// 810 // diacylglycerol pyrophosphate phosphatase activity // inferred from direct assay /// 8195 // phosphatidate phosphatase activity // inferred from direct assay 2205.6484375 702.487487792969 743.070617675781 2177.92553710938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR284C /GEN=DPP1 /DB_XREF=GI:6320490 /SEG=NC_001136:-1030542,1031411 /DEF=Diacylglycerol pyrophosphate (DGPP) phosphatase, zinc-regulated vacuolar membrane-associated lipid phosphatase, dephosphorylates DGPP to phosphatidate (PA) and Pi, then PA to diacylglycerol; involved in lipid signaling and cell metabolism /NOTE=Dpp1p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA,TAS] [pmid 11139591]; go_function: diacylglycerol pyrophosphate phosphatase activity [goid GO:0000810] [evidence IDA] [pmid 8567632]; go_function: diacylglycerol pyrophosphate phosphatase activity [goid GO:0000810] [evidence IMP] [pmid 9452443]; go_function: phosphatidate phosphatase activity [goid GO:0008195] [evidence IDA] [pmid 10329682]; go_process: phospholipid metabolism [goid GO:0006644] [evidence IMP] [pmid 10329682]; go_process: signal transduction [goid GO:0007165] [evidence TAS] [pmid 10545184] --- --- --- --- --- S0002692 // span:21-38,65-87,92-114,201-218,225-247 // numtm:5 S0002692 // DPP1 SGDID:S0002692, Chr IV from 1031413-1030544, reverse complement, Verified ORF // sgd // 11 // --- /// YDR284C // cdna:known chromosome:SGD1:IV:1030544:1031413:-1 gene:YDR284C // ensembl // 11 // --- --- No cerevisiae_gene -1.51329101334717 -3.139769000626 -1.15047805335249 -2.96828913031032 -1.01272903959215 Max fold change at or above threshold 4 3.139769000626 Max fold change at or above threshold 0.882122089747714 -0.889701470254417 -0.841864845920204 0.849444226426907 1457.28302001953 848.369433413123 0.582158319117554 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774902_at YOR138C.S1 Hypothetical protein 3.13974829979128 570.2685546875 795.287902832031 --- 16579 // protein deubiquitination // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 5515 // protein binding // inferred from direct assay 746.439514160156 538.024353027344 602.512756347656 844.136291503906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR138C /GEN=SIA1 /DB_XREF=GI:6324712 /SEG=NC_001147:-584309,586324 /DEF=Yor138cp /NOTE=Sia1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: proton transport [goid GO:0015992] [evidence IMP] [pmid 9450541] --- --- --- --- --- --- S0005664 // RUP1 SGDID:S0005664, Chr XV from 586324-584309, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017564 // cdna:Genscan chromosome:SGD1:XV:584309:586324:-1 // ensembl // 11 // --- /// GENEFINDER00000022804 // cdna:GeneFinder chromosome:SGD1:XV:584309:586321:-1 // ensembl // 11 // --- /// YOR138C // cdna:known chromosome:SGD1:XV:584309:586324:-1 gene:YOR138C // ensembl // 11 // --- --- No cerevisiae_gene -3.13974829979128 -1.3873712406513 1.1874686673756 -1.23887752797959 1.13088371594807 Max fold change at or above threshold 4 3.13974829979128 Max fold change at or above threshold 0.459893422179861 -1.04571176761023 -0.57984318975535 1.16566153518572 682.778228759766 138.426170782441 0.202739579195262 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776378_at YDR103W.S1 Scaffold protein that, in response to pheromone, shuttles from the nucleus to the plasma membrane and assembles kinases Ste11p, Ste7p, and Fus3p into a specific signaling complex; active oligomeric form interacts with Ste4p-Ste18p complex 3.13928292055837 73.5653457641602 204.245223999023 STE5 750 // signal transduction during conjugation with cellular fusion // inferred from direct assay /// 750 // signal transduction during conjugation with cellular fusion // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay 5078 // MAP-kinase scaffold activity // inferred from physical interaction 203.488006591797 82.310791015625 64.8199005126953 205.00244140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR103W /GEN=STE5 /DB_XREF=GI:6320308 /SEG=NC_001136:+658344,661097 /DEF=Protein of the pheromone pathway /NOTE=Ste5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11781566]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9732267]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 9732267]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 11781566]; go_function: MAP-kinase scaffold activity [goid GO:0005078] [evidence IPI] [pmid 8062390]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence IDA,IPI] [pmid 8062390] --- --- --- --- --- --- S0002510 // STE5 SGDID:S0002510, Chr IV from 658345-661098, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023846 // cdna:GeneFinder chromosome:SGD1:IV:658348:661098:1 // ensembl // 11 // --- /// GENSCAN00000025172 // cdna:Genscan chromosome:SGD1:IV:658642:661098:1 // ensembl // 11 // --- /// YDR103W // cdna:known chromosome:SGD1:IV:658345:661098:1 gene:YDR103W // ensembl // 11 // --- --- No cerevisiae_gene -1.0453714501708 -2.47219111954797 -1.37914698167751 -3.13928292055837 1.00744237874172 Max fold change at or above threshold 4 3.13928292055837 Max fold change at or above threshold 0.852152667361759 -0.746750022742564 -0.977537896060836 0.872135251441641 138.905284881592 75.7877363807959 0.545607292374803 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774245_at YFR012W-A.S1 Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 3.13874467916196 14.4219355583191 7.95702433586121 --- --- --- --- 9.93532562255859 19.4236698150635 9.42020130157471 5.97872304916382 0.219482004642487 0.0239257998764515 0.014160200022161 0.0107421996071935 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR012W-A /GEN=UBP6 /DB_XREF=GI:13129167 /SEG=NC_001138:+169216,169302 /DEF=Hypothetical ORF identified by homology. See FEBS Letters [2000] 487:31-36. /NOTE=Yfr012w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007606 // YFR012W-A SGDID:S0007606, Chr VI from 169216-169302, Uncharacterized ORF // sgd // 11 // --- /// YFR012W-A // cdna:known chromosome:SGD1:VI:169216:169302:1 gene:YFR012W-A // ensembl // 11 // --- --- No cerevisiae_gene -3.13874467916196 1.95501089274429 -1.2613332332462 -1.05468294195558 -1.66178054090466 Max fold change at or above threshold 4 3.13874467916196 Max fold change at or above threshold -0.217599273339371 1.42865490854058 -0.306974779792613 -0.904080855408601 11.1894799470901 5.76359610620371 0.515090614886221 AAPAPP No 4 0 APPP 1 3 0 No No 2 < x = 3
1772923_at YDR117C.S1 Hypothetical protein 3.13657017692726 274.182907104492 843.536437988281 --- --- --- 3723 // RNA binding // inferred from sequence similarity 786.827026367188 250.855865478516 297.509948730469 900.245849609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR117C /GEN=MRPL1 /DB_XREF=GI:6320322 /SEG=NC_001136:-683940,685637 /DEF=Hypothetical ORF /NOTE=Ydr117cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 10093218]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002524 // YDR117C SGDID:S0002524, Chr IV from 685638-683941, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023857 // cdna:GeneFinder chromosome:SGD1:IV:683941:685638:-1 // ensembl // 11 // --- /// GENSCAN00000025182 // cdna:Genscan chromosome:SGD1:IV:683941:685638:-1 // ensembl // 11 // --- /// YDR117C // cdna:known chromosome:SGD1:IV:683941:685638:-1 gene:YDR117C // ensembl // 11 // --- --- No cerevisiae_gene -1.23800459155677 -3.13657017692726 1.1171975927469 -2.64470828530181 1.14414708626094 Max fold change at or above threshold 4 3.13657017692726 Max fold change at or above threshold 0.685600691883206 -0.926306419270837 -0.785996540594703 1.02670226798233 558.859672546387 332.507473402077 0.594974892153232 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777831_at SPAC683.03.S1 --- 3.13415501964565 --- --- --- --- 0.493766129016876 0.402983129024506 1.54753959178925 0.772234797477722 0.953857004642487 0.943848013877869 0.850341975688934 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC683.03 /DEF=dubious --- --- --- --- --- --- SPAC683.03 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.05250288477057 -1.22527742094843 1.00207151816732 3.13415501964565 1.56396875382136 Max fold change at or above threshold 0 3.13415501964565 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778111_at YDR384C.S1 Plasma membrane protein, regulation pattern suggests a possible role in export of ammonia from the cell; member of the TC 9.B.33 YaaH family of putative transporters 3.13262526732686 2488.82885742188 935.920166015625 ATO3 6810 // transport // inferred from mutant phenotype /// 19740 // nitrogen utilization // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 5215 // transporter activity // inferred from sequence similarity 860.268371582031 2282.75927734375 2694.8984375 1011.57196044922 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR384C /GEN=ATO3 /DB_XREF=GI:6320592 /SEG=NC_001136:-1241192,1242019 /DEF=Plasma membrane protein, regulation pattern suggests a possible role in export of ammonia from the cell; member of the TC 9.B.33 YaaH family of putative transporters /NOTE=Ato3p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12966084]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 12429834]; go_process: nitrogen utilization [goid GO:0019740] [evidence IMP] [pmid 12429834]; go_process: transport [goid GO:0006810] [evidence IMP] [pmid 12429834] --- --- --- --- --- S0002792 // span:85-107,117-139,144-163,178-199,206-228,238-257 // numtm:6 S0002792 // ATO3 SGDID:S0002792, Chr IV from 1242021-1241194, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023658 // cdna:GeneFinder chromosome:SGD1:IV:1241194:1242021:-1 // ensembl // 11 // --- /// GENSCAN00000025404 // cdna:Genscan chromosome:SGD1:IV:1241194:1242021:-1 // ensembl // 11 // --- /// YDR384C // cdna:known chromosome:SGD1:IV:1241194:1242021:-1 gene:YDR384C // ensembl // 11 // --- --- No cerevisiae_gene 2.55386158579323 2.65354318809346 1.39962994435401 3.13262526732686 1.17587952069997 Max fold change at or above threshold 4 3.13262526732686 Max fold change at or above threshold -0.931963955758003 0.62384017370264 1.07460425569878 -0.766480473643414 1712.37451171875 914.312334583441 0.533944139162481 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778541_at YDL179W.S1 Cyclin, forms a functional kinase complex with Pho85p cyclin-dependent kinase (Cdk), expressed in late M/early G1 phase, activated by Swi5p 3.13236494212603 195.674697875977 159.093818664551 PCL9 7049 // cell cycle // traceable author statement 307 // cyclin-dependent protein kinase holoenzyme complex // traceable author statement 16538 // cyclin-dependent protein kinase regulator activity // traceable author statement 150.257263183594 176.721313476563 214.628082275391 167.930374145508 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL179W /GEN=PCL9 /DB_XREF=GI:6320022 /SEG=NC_001136:+138292,139206 /DEF=PHO85 cyclin /NOTE=Pcl9p; go_component: cyclin-dependent protein kinase holoenzyme complex [goid GO:0000307] [evidence TAS] [pmid 11602261]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS] [pmid 11602261]; go_process: cell cycle [goid GO:0007049] [evidence TAS] [pmid 11602261] --- --- --- --- --- --- S0002338 // PCL9 SGDID:S0002338, Chr IV from 138292-139206, Verified ORF // sgd // 11 // --- /// YDL179W // cdna:known chromosome:SGD1:IV:138292:139206:1 gene:YDL179W // ensembl // 11 // --- --- No cerevisiae_gene 3.13236494212603 1.17612493221465 -1.15194943020543 1.42840404335825 1.11761901280153 Max fold change at or above threshold 4 3.13236494212603 Max fold change at or above threshold -0.998831081575783 -0.0244099968758782 1.37133836218148 -0.348097283729822 177.384258270264 27.1587414399176 0.153106829798495 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777131_at SPCC830.09c.S1 --- 3.13219157147082 --- --- --- --- 0.675507068634033 0.509492576122284 0.883077502250671 0.282941222190857 0.870360970497131 0.780517995357513 0.850341975688934 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC830.09c /DEF=RNase P and RNase MRP subunit (predicted) --- --- --- --- --- --- SPCC830.09c // |||RNase P and RNase MRP subunit |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.49310918723434 -1.32584280967404 3.13219157147082 1.30728092014844 -2.38744663433444 Max fold change at or above threshold 0 3.13219157147082 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773236_at SPAC31G5.05c.S1 --- 3.13202792688785 --- --- --- --- 1.26614117622375 1.1111581325531 0.8668372631073 1.0569611787796 0.633789002895355 0.725830018520355 0.725830018520355 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31G5.05c /DEF=ribulose phosphate 3-epimerase (predicted) --- --- --- --- --- --- SPAC31G5.05c // |||ribulose phosphate 3-epimerase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.13202792688785 -1.13947883665716 -2.03506403427424 -1.46064461013719 -1.19790698243589 Max fold change at or above threshold 0 3.13202792688785 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775881_at SPBC119.02.S1 --- 3.13146397110077 --- --- --- --- 7.77289867401123 6.57436895370483 10.1244077682495 4.62659978866577 0.111571997404099 0.334473013877869 0.149657994508743 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC119.02 /GEN=ubc4 /DEF=ubiquitin conjugating enzyme (PMID 7698660) --- --- --- --- --- --- L37384 // Schizosaccharomyces pombe UBC4 mRNA fragment. // gb // 11 // --- /// SPBC119.02 // |ubc4||ubiquitin conjugating enzyme |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.61128290068984 -1.18230338588329 -3.13146397110077 1.30252666255648 -1.68004561212605 Max fold change at or above threshold 4 3.13146397110077 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775377_at SPBC119.11c.S1 --- 3.13145568942009 --- --- --- --- 0.418268203735352 0.812866926193237 1.0164589881897 1.30978834629059 0.991943001747131 0.989257991313934 0.919434010982513 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC119.11c /GEN=pac1 /DEF=5 endonuclease --- --- --- --- --- --- SPBC119.11c // |pac1|hcs|double-strand-specific ribonuclease Pac1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.03235596895478 1.94341075638529 -1.60873350832751 2.43016078944608 3.13145568942009 Max fold change at or above threshold 0 3.13145568942009 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774894_at YPR085C.S1 Protein required for cell viability 3.1310018946562 157.963985443115 370.630874633789 --- --- --- --- 354.143493652344 113.108680725098 202.819290161133 387.118255615234 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR085C /GEN=MDM36 /DB_XREF=GI:37362704 /SEG=NC_001148:-708493,709824 /DEF=Protein required for cell viability /NOTE=Ypr085cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006289 // YPR085C SGDID:S0006289, Chr XVI from 709826-708495, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017249 // cdna:Genscan chromosome:SGD1:XVI:708495:709841:-1 // ensembl // 11 // --- /// GENEFINDER00000020898 // cdna:GeneFinder chromosome:SGD1:XVI:708495:709841:-1 // ensembl // 11 // --- /// YPR085C // cdna:known chromosome:SGD1:XVI:708495:709826:-1 gene:YPR085C // ensembl // 11 // --- --- No cerevisiae_gene -1.48579036770468 -3.1310018946562 -1.083660139752 -1.74610360469652 1.09311130249159 Max fold change at or above threshold 4 3.1310018946562 Max fold change at or above threshold 0.697376615479721 -1.17351271779543 -0.477187484783751 0.953323587099462 264.297430038452 128.834350936885 0.487459718840782 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778206_at SPAC1420.02c.S1 --- 3.13068166447027 --- --- --- --- 9.79463386535645 9.89357757568359 15.696102142334 4.33324432373047 0.0805663987994194 0.0952147990465164 0.030273400247097 0.0676269978284836 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1420.02c /GEN=cct5 /DEF=chaperonin-containing T-complex --- --- --- --- --- --- SPAC1420.02c // |cct5||chaperonin-containing T-complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.13068166447027 1.01010182837738 -1.08753126789866 1.60252055953321 -2.26034655182431 Max fold change at or above threshold 4 3.13068166447027 Max fold change at or above threshold AAAMPA No 4 0 AAPA 3 1 0 No No x = 1
1775272_at SPBC29A3.21.S1 --- 3.12932730744598 --- --- --- --- 1.05557703971863 2.5535261631012 1.03415536880493 2.14294576644897 0.850341975688934 0.725830018520355 0.850341975688934 0.559326171875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A3.21 /DEF=dubious --- --- --- --- --- --- SPBC29A3.21 // |||dubious|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.12932730744598 2.41908081269166 -1.44369763586703 -1.02071417077151 2.03011782732617 Max fold change at or above threshold 1 3.12932730744598 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779755_at YKL038W.S1 Glucose-responsive transcription factor that regulates expression of several glucose transporter (HXT) genes in response to glucose; binds to promoters and acts both as a transcriptional activator and repressor 3.1289451871876 900.269805908203 1344.26245117188 RGT1 6006 // glucose metabolism // traceable author statement /// 16481 // negative regulation of transcription // inferred from direct assay /// 46324 // regulation of glucose import // inferred from expression pattern 5634 // nucleus // inferred from curator 3677 // DNA binding // traceable author statement /// 3677 // DNA binding // inferred from direct assay /// 3702 // RNA polymerase II transcription factor activity // traceable author statement /// 3714 // transcription corepressor activity // traceable author statement /// 16563 // transcriptional activator activity // traceable author statement /// 16564 // transcriptional repressor activity // inferred from direct assay 1292.68835449219 748.146301269531 1052.39331054688 1395.83654785156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL038W /GEN=RGT1 /DB_XREF=GI:6322813 /SEG=NC_001143:+365248,368760 /DEF=transcriptional repressor and activator /NOTE=Rgt1p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 10087931]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 10087931]; go_function: RNA polymerase II transcription factor activity [goid GO:0003702] [evidence TAS] [pmid 10087931]; go_function: transcription corepressor activity [goid GO:0003714] [evidence TAS] [pmid 10087931]; go_function: transcriptional activator activity [goid GO:0016563] [evidence TAS] [pmid 10087931]; go_process: glucose metabolism [goid GO:0006006] [evidence TAS] [pmid 10087931] --- --- --- --- --- --- S0001521 // RGT1 SGDID:S0001521, Chr XI from 365248-368760, Verified ORF // sgd // 11 // --- /// GENSCAN00000018390 // cdna:Genscan chromosome:SGD1:XI:365248:368760:1 // ensembl // 11 // --- /// GENEFINDER00000023032 // cdna:GeneFinder chromosome:SGD1:XI:365326:368760:1 // ensembl // 11 // --- /// YKL038W // cdna:known chromosome:SGD1:XI:365248:368760:1 gene:YKL038W // ensembl // 11 // --- --- No cerevisiae_gene -3.1289451871876 -1.72785503623906 -1.18030020367716 -1.22833197582798 1.07979355039513 Max fold change at or above threshold 4 3.1289451871876 Max fold change at or above threshold 0.591862345665687 -1.29928732764315 -0.242662538437431 0.950087520414896 1122.26612854004 287.942335240923 0.256572240681904 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776308_at SPAC4G9.17c.S1 --- 3.12800385414465 --- --- --- --- 8.4071569442749 10.0466747283936 6.11865472793579 4.60935211181641 0.366210997104645 0.303710997104645 0.219482004642487 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G9.17c /GEN=mrps5 /DEF=mitochondrial ribosomal protein subunit s5 --- --- --- --- --- --- SPAC4G9.17c // |mrps5||mitochondrial ribosomal protein subunit S5|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.12800385414465 1.19501453285407 -1.25971996642478 -1.37402048621743 -1.82393463122996 Max fold change at or above threshold 4 3.12800385414465 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770093_at YLR001C.S1 Hypothetical protein 3.12784703642562 852.90966796875 1377.18878173828 --- --- 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 1328.06201171875 931.78466796875 774.03466796875 1426.31555175781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR001C /GEN=DNM1 /DB_XREF=GI:6323029 /SEG=NC_001144:-151388,153976 /DEF=Hypothetical ORF /NOTE=Ylr001cp; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003991 // span:761-783 // numtm:1 S0003991 // YLR001C SGDID:S0003991, Chr XII from 153976-151388, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017742 // cdna:Genscan chromosome:SGD1:XII:151388:153970:-1 // ensembl // 11 // --- /// YLR001C // cdna:known chromosome:SGD1:XII:151388:153976:-1 gene:YLR001C // ensembl // 11 // --- --- No cerevisiae_gene -3.12784703642562 -1.42528854291396 1.00615994287964 -1.71576554213508 1.07398264476514 Max fold change at or above threshold 4 3.12784703642562 Max fold change at or above threshold 0.682609418408574 -0.587279826863916 -1.09279706523552 0.997467473690862 1115.04922485352 312.05661850059 0.279859051551366 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769395_at YER026C.S1 phosphatidylserine synthase 3.127215353563 4931.68041992188 1799.87603759766 CHO1 6659 // phosphatidylserine biosynthesis // traceable author statement /// 6659 // phosphatidylserine biosynthesis // inferred from direct assay /// 6659 // phosphatidylserine biosynthesis // inferred from mutant phenotype 5783 // endoplasmic reticulum // traceable author statement 3882 // CDP-diacylglycerol-serine O-phosphatidyltransferase activity // traceable author statement /// 3882 // CDP-diacylglycerol-serine O-phosphatidyltransferase activity // inferred from direct assay /// 3882 // CDP-diacylglycerol-serine O-phosphatidyltransferase activity // inferred from mutant phenotype 1784.11865234375 5579.3232421875 4284.03759765625 1815.63342285156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER026C /GEN=CHO1 /DB_XREF=GI:6320864 /SEG=NC_001137:-207643,208473 /DEF=phosphatidylserine synthase /NOTE=Cho1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS]; go_function: CDP-diacylglycerol-serine O-phosphatidyltransferase activity [goid GO:0003882] [evidence TAS]; go_process: phosphatidylserine biosynthesis [goid GO:0006659] [evidence TAS] --- --- --- --- --- S0000828 // span:85-107,161-183 // numtm:2 S0000828 // CHO1 SGDID:S0000828, Chr V from 208473-207643, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019580 // cdna:GeneFinder chromosome:SGD1:V:207643:208629:-1 // ensembl // 9 // --- /// YER026C // cdna:known chromosome:SGD1:V:207643:208473:-1 gene:YER026C // ensembl // 11 // --- --- No cerevisiae_gene 1.18181738565222 3.127215353563 1.33110588074305 2.40120666415791 1.01766405528377 Max fold change at or above threshold 4 3.127215353563 Max fold change at or above threshold -0.839553222514986 1.17496133612789 0.48741690295235 -0.822825016565253 3365.77822875977 1883.93008805083 0.559730903228591 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777388_at YGL184C.S1 Cystathionine beta-lyase, converts cystathionine into homocysteine 3.12686350136574 599.117904663086 248.747497558594 STR3 9086 // methionine biosynthesis // inferred from mutant phenotype 5777 // peroxisome // inferred from direct assay 4121 // cystathionine beta-lyase activity // inferred from mutant phenotype /// 4121 // cystathionine beta-lyase activity // inferred from sequence similarity 232.646209716797 470.782867431641 727.452941894531 264.848785400391 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL184C /GEN=STR3 /DB_XREF=GI:6321254 /SEG=NC_001139:-154619,156016 /DEF=Sulfur TRansfer /NOTE=Str3p; go_component: peroxisome [goid GO:0005777] [evidence IDA] [pmid 10077615]; go_function: cystathionine beta-lyase activity [goid GO:0004121] [evidence IMP,ISS] [pmid 10821189]; go_process: methionine biosynthesis [goid GO:0009086] [evidence IMP] [pmid 10821189] --- --- --- --- --- --- S0003152 // STR3 SGDID:S0003152, Chr VII from 156018-154621, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000019212 // cdna:Genscan chromosome:SGD1:VII:154621:155781:-1 // ensembl // 10 // --- /// GENEFINDER00000021415 // cdna:GeneFinder chromosome:SGD1:VII:154621:156223:-1 // ensembl // 10 // --- /// YGL184C // cdna:known chromosome:SGD1:VII:154621:156018:-1 gene:YGL184C // ensembl // 10 // --- --- No cerevisiae_gene 2.50369476625174 2.02359998903369 1.87877824332108 3.12686350136574 1.13841865604771 Max fold change at or above threshold 4 3.12686350136574 Max fold change at or above threshold -0.838262087883464 0.205308372543996 1.33009659438059 -0.697142879041123 423.93270111084 228.194134220032 0.538279150492731 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776425_at YBR280C.S1 Hypothetical protein 3.12539601016065 738.6025390625 799.168212890625 --- --- --- --- 733.361755371094 569.532104492188 907.672973632813 864.974670410156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR280C /GEN=PAF1 /DB_XREF=GI:37362624 /SEG=NC_001134:-762742,764655 /DEF=Hypothetical ORF /NOTE=Ybr280cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000484 // YBR280C SGDID:S0000484, Chr II from 764693-762780, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021362 // cdna:Genscan chromosome:SGD1:II:762780:764693:-1 // ensembl // 11 // --- /// GENEFINDER00000022300 // cdna:GeneFinder chromosome:SGD1:II:762780:764708:-1 // ensembl // 11 // --- /// YBR280C // cdna:known chromosome:SGD1:II:762780:764693:-1 gene:YBR280C // ensembl // 11 // --- --- No cerevisiae_gene -3.12539601016065 -1.28765656858797 1.90411537727544 1.23768790366429 1.17946520128046 Max fold change at or above threshold 4 3.12539601016065 Max fold change at or above threshold -0.233393729732088 -1.30977087281663 0.911848356261351 0.631316246287369 768.885375976563 152.204691386723 0.197954982813151 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773563_at SPBC776.04.S1 --- 3.1244445538862 --- --- --- --- 4.43184900283813 1.41844379901886 5.45307016372681 7.84690475463867 0.171387001872063 0.601073980331421 0.0375977009534836 0.00537109375 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC776.04 /GEN=sec2302 /DEF=GTPase activating protein (predicted) --- --- --- --- --- --- SPBC776.04 // |sec2302|sec23-b|GTPase activating protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.19468407378031 -3.1244445538862 -1.50954511978206 1.23042778764229 1.77057132352965 Max fold change at or above threshold 3 3.1244445538862 Max fold change at or above threshold AAAAPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1776416_at SPBC18E5.10.S1 --- 3.12353133075688 --- --- --- --- 0.570232212543488 0.95883846282959 1.7811381816864 0.316216647624969 0.943848013877869 0.953857004642487 0.780517995357513 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18E5.10 /DEF=respiratory chain NADH dehydrogenase complex (subunit F) (predicted) --- --- --- --- --- --- SPBC18E5.10 // |||respiratory chain NADH dehydrogenase complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.10979461354141 1.68148771980584 2.16924275123763 3.12353133075688 -1.80329598971582 Max fold change at or above threshold 0 3.12353133075688 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774578_at SPAC821.03c.S1 --- 3.1228332434227 --- --- --- --- 0.822052419185638 0.357421666383743 0.396415203809738 0.793405532836914 0.805419981479645 0.919434010982513 0.904784977436066 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC821.03c /DEF=serine-rich protein --- --- --- --- --- --- SPAC821.03c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.78069659175256 -2.29995128024233 -3.1228332434227 -2.0737156680302 -1.03610623465946 Max fold change at or above threshold 0 3.1228332434227 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772861_at SPAC1F7.05.S1 --- 3.12170271716885 --- --- --- --- 8.74636363983154 2.80179262161255 8.53520965576172 3.50559902191162 0.24609400331974 0.533936023712158 0.303710997104645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F7.05 /GEN=cdc22 /DEF=ribonucleoside reductase --- --- --- --- --- --- SPAC1F7.05 // |cdc22||ribonucleoside reductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.80837443367693 -3.12170271716885 -1.30621400514169 -1.024739167822 -2.49496978552388 Max fold change at or above threshold 4 3.12170271716885 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772248_at YGL225W.S1 Golgi GDP-mannose transporter; regulates Golgi function and glycosylation in Golgi 3.1213739433675 582.521438598633 1443.36010742188 VRG4 6487 // N-linked glycosylation // inferred from mutant phenotype /// 15780 // nucleotide-sugar transport // inferred from direct assay /// 15780 // nucleotide-sugar transport // inferred from mutant phenotype /// 30259 // lipid glycosylation // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5794 // Golgi apparatus // inferred from direct assay 5338 // nucleotide-sugar transporter activity // inferred from sequence similarity /// 5338 // nucleotide-sugar transporter activity // inferred from mutant phenotype 1393.47961425781 446.431488037109 718.611389160156 1493.24060058594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL225W /GEN=VRG4 /DB_XREF=GI:6321213 /SEG=NC_001139:+76892,77905 /DEF=May regulate Golgi function and glycosylation in Golgi /NOTE=Vrg4p; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 9395539]; go_function: nucleotide-sugar transporter activity [goid GO:0005338] [evidence IMP,ISS] [pmid 9395539]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IMP] [pmid 9395539]; go_process: lipid glycosylation [goid GO:0030259] [evidence IMP] [pmid 9395539]; go_process: nucleotide-sugar transport [goid GO:0015780] [evidence IDA,IMP] [pmid 9395539] --- --- --- --- --- S0003193 // span:23-45,52-74,89-111,116-138,184-201,222-241,251-273,280-302,306-325 // numtm:9 S0003193 // VRG4 SGDID:S0003193, Chr VII from 76893-77906, Verified ORF // sgd // 11 // --- /// GENSCAN00000019181 // cdna:Genscan chromosome:SGD1:VII:76893:77906:1 // ensembl // 11 // --- /// GENEFINDER00000021717 // cdna:GeneFinder chromosome:SGD1:VII:76893:77906:1 // ensembl // 11 // --- /// YGL225W // cdna:known chromosome:SGD1:VII:76893:77906:1 gene:YGL225W // ensembl // 11 // --- --- No cerevisiae_gene 1.99438809991954 -3.1213739433675 -1.37042759020087 -1.93912820653507 1.07159127791135 Max fold change at or above threshold 4 3.1213739433675 Max fold change at or above threshold 0.744838330948765 -1.10884299984472 -0.576098372238084 0.940103041134035 1012.94077301025 510.901259287816 0.504374266394195 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771214_at YOR347C.S1 Pyruvate kinase that appears to be modulated by phosphorylation; PYK2 transcription is repressed by glucose, and Pyk2p may be active under low glycolytic flux 3.12130424250536 1278.89901733398 608.640563964844 PYK2 6090 // pyruvate metabolism // inferred from mutant phenotype 5829 // cytosol // traceable author statement 4743 // pyruvate kinase activity // inferred from mutant phenotype 532.651733398438 895.229919433594 1662.56811523438 684.62939453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR347C /GEN=PYK2 /DB_XREF=GI:6324923 /SEG=NC_001147:-984937,986457 /DEF=Pyruvate kinase, glucose-repressed isoform /NOTE=Pyk2p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: pyruvate kinase activity [goid GO:0004743] [evidence IMP] [pmid 9139918]; go_process: glycolysis [goid GO:0006096] [evidence TAS]; go_process: pyruvate metabolism [goid GO:0006090] [evidence TAS] --- --- --- --- --- --- S0005874 // PYK2 SGDID:S0005874, Chr XV from 986457-984937, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017799 // cdna:Genscan chromosome:SGD1:XV:984937:986457:-1 // ensembl // 11 // --- /// GENEFINDER00000022915 // cdna:GeneFinder chromosome:SGD1:XV:984937:986457:-1 // ensembl // 11 // --- /// YOR347C // cdna:known chromosome:SGD1:XV:984937:986457:-1 gene:YOR347C // ensembl // 11 // --- --- No cerevisiae_gene 1.16584870389091 1.68070403849402 2.15071813044763 3.12130424250536 1.28532275707273 Max fold change at or above threshold 4 3.12130424250536 Max fold change at or above threshold -0.819401001342683 -0.0967450063985083 1.43263974067868 -0.516493732937484 943.769790649414 501.729991270833 0.531623279577099 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773702_at YMR118C.S1 Hypothetical protein 3.11932149592814 472.047653198242 1480.51708984375 --- --- --- --- 1408.28674316406 451.472137451172 492.623168945313 1552.74743652344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR118C /GEN=SPC24 /DB_XREF=GI:6323765 /SEG=NC_001145:-502143,502733 /DEF=Hypothetical ORF /NOTE=Ymr118cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004724 // span:96-118,138-160,173-195 // numtm:3 S0004724 // YMR118C SGDID:S0004724, Chr XIII from 502733-502143, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YMR118C // cdna:known chromosome:SGD1:XIII:502143:502733:-1 gene:YMR118C // ensembl // 11 // --- --- No cerevisiae_gene -2.97491412592235 -3.11932149592814 1.57653624069653 -2.85875052563839 1.1025790337519 Max fold change at or above threshold 4 3.11932149592814 Max fold change at or above threshold 0.737888245920034 -0.89640598215664 -0.826117660000262 0.984635396236868 976.282371520996 585.460432567838 0.599683503099335 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772707_at SPBC15D4.15.S1 --- 3.1190320495945 --- --- --- --- 1.28631663322449 0.749358832836151 3.61234474182129 0.412408918142319 0.747314453125 0.850341975688934 0.5 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC15D4.15 /GEN=pho2 /DEF=p-nitrophenylphosphatase (PMID 1645660) --- --- --- --- --- --- SPBC15D4.15 // |pho2||4-nitrophenylphosphatase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.14698483078394 -1.71655631035411 -1.65072709191764 2.80828580500122 -3.1190320495945 Max fold change at or above threshold 1 3.1190320495945 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-X03453-1_at AFFX-Sc-X03453-1 --- 3.11889438122115 --- --- --- --- 0.924839735031128 0.726135492324829 1.29982602596283 0.711058020591736 0.696289002895355 0.870360970497131 0.753906011581421 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL X03453 /FEA=CDS_1 /DB_XREF=CAA27177.1 GI:15136 SPTREMBL:Q38403 /NOTE=unnamed protein product; pot. ORF1 (aa 1-73) --- --- --- --- --- --- AFFX-Sc-X03453-1 // --- // affx // --- // --- --- No No 1.28584393792412 -1.27364623380427 -3.11889438122115 1.40546083470244 -1.30065298224396 Max fold change at or above threshold 0 3.11889438122115 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770181_at SPAPB1E7.08c.S1 --- 3.11710600311985 --- --- --- --- 4.02596378326416 8.82590484619141 6.57676839828491 9.1849365234375 0.303710997104645 0.0805663987994194 0.030273400247097 0.0561522990465164 A A P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1E7.08c /DEF=membrane transporter --- --- --- --- --- --- SPAPB1E7.08c // |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.11710600311985 2.19224645856987 1.30955454765323 1.63358856471198 2.28142552141653 Max fold change at or above threshold 4 3.11710600311985 Max fold change at or above threshold AAAAPM No 4 0 AAPM 2 1 1 No No x = 1
1775189_at YER153C.S1 Specific translational activator for the COX3 mRNA that acts together with Pet54p and Pet494p; located in the mitochondrial inner membrane 3.11697484164523 43.2241325378418 105.052406311035 PET122 6412 // protein biosynthesis // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay 45182 // translation regulator activity // inferred from mutant phenotype 104.768280029297 33.6121673583984 52.8360977172852 105.336532592773 0.0239257998764515 0.24609400331974 0.0952147990465164 0.0239257998764515 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER153C /GEN=PET122 /DB_XREF=GI:6321001 /SEG=NC_001137:-474036,474800 /DEF=Specific translational activator for the COX3 mRNA that acts together with Pet54p and Pet494p; located in the mitochondrial inner membrane /NOTE=Pet122p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 8389363]; go_function: translation regulator activity [goid GO:0045182] [evidence IMP] [pmid 2833749]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP] [pmid 2833749] --- --- --- --- --- --- S0000955 // PET122 SGDID:S0000955, Chr V from 474800-474036, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019724 // cdna:GeneFinder chromosome:SGD1:V:469681:474725:-1 // ensembl // 10 // --- /// GENSCAN00000016932 // cdna:Genscan chromosome:SGD1:V:474036:474800:-1 // ensembl // 11 // --- /// YER153C // cdna:known chromosome:SGD1:V:474036:474800:-1 gene:YER153C // ensembl // 11 // --- --- No cerevisiae_gene 1.02719180657882 -3.11697484164523 1.98625623243725 -1.98289208620004 1.00542389894458 Max fold change at or above threshold 4 3.11697484164523 Max fold change at or above threshold 0.838033612150091 -1.10878955083939 -0.58282499907315 0.853580937762453 74.1382694244385 36.5498592905753 0.492995851863346 PPAPAP Called_P_>2EXP 4 0 PAAP 2 2 0 Yes No 1 < x = 2
1771799_at YDR159W.S1 Nuclear pore-associated protein, forms a complex with Thp1p that is involved in transcription and in mRNA export from the nucleus 3.11519687427581 374.970474243164 1252.66430664063 SAC3 6406 // mRNA-nucleus export // inferred from genetic interaction /// 6406 // mRNA-nucleus export // inferred from physical interaction /// 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 6611 // protein-nucleus export // inferred from genetic interaction /// 6611 // protein-nucleus export // inferred from mutant phenotype /// 7067 // mitosis // inferred from mutant phenotype /// 30029 // actin filament-based process // inferred from genetic interaction 5643 // nuclear pore // inferred from direct assay 5515 // protein binding // inferred from physical interaction 1137.17272949219 384.900543212891 365.040405273438 1368.15588378906 0.000244141003349796 0.00122069998178631 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR159W /GEN=SAC3 /DB_XREF=GI:6320363 /SEG=NC_001136:+771871,775776 /DEF=A component of the nuclear pore that is involved in the nuclear export of both mRNA and protein /NOTE=Sac3p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 12631707]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12411502]; go_process: actin filament-based process [goid GO:0030029] [evidence IGI] [pmid 9153752]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IGI,IMP,IPI] [pmid 12631707]; go_process: mitosis [goid GO:0007067] [evidence IMP] [pmid 8799844]; go_process: protein-nucleus export [goid GO:0006611] [evidence IGI,IMP] [pmid 10716708] --- --- --- --- --- --- S0002566 // SAC3 SGDID:S0002566, Chr IV from 771872-775777, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023903 // cdna:GeneFinder chromosome:SGD1:IV:772478:775777:1 // ensembl // 11 // --- /// GENSCAN00000025215 // cdna:Genscan chromosome:SGD1:IV:774542:775777:1 // ensembl // 11 // --- /// YDR159W // cdna:known chromosome:SGD1:IV:771872:775777:1 gene:YDR159W // ensembl // 11 // --- --- No cerevisiae_gene -2.36845903524079 -2.95445862455749 -1.12042152500993 -3.11519687427581 1.2031205535504 Max fold change at or above threshold 4 3.11519687427581 Max fold change at or above threshold 0.627265632208123 -0.832040683577426 -0.870566665603639 1.07534171697294 813.817390441895 515.499849580481 0.633434300661196 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775333_at SPCC1672.09.S1 --- 3.11478382494961 --- --- --- --- 3.48689365386963 4.05074834823608 3.29685854911804 1.37864708900452 0.366210997104645 0.633789002895355 0.601073980331421 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1672.09 /DEF=triglyceride lipase-cholesterol esterase (predicted) --- --- --- --- --- --- SPCC1672.09 // |||triglyceride lipase-cholesterol esterase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.58546147147454 1.16170688020287 3.11478382494961 -1.05764126726105 -2.52921409813981 Max fold change at or above threshold 3 3.11478382494961 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774438_at YMR277W.S1 Carboxy-terminal domain (CTD) phosphatase, essential for dephosphorylation of the repeated C-terminal domain of the RNA polymerase II large subunit (Rpo21p) 3.11468543354982 146.074348449707 362.285537719727 FCP1 6350 // transcription // inferred from mutant phenotype /// 6470 // protein amino acid dephosphorylation // inferred from direct assay 5634 // nucleus // inferred from physical interaction 4721 // phosphoprotein phosphatase activity // inferred from direct assay /// 16791 // phosphoric monoester hydrolase activity // traceable author statement 370.197967529297 118.855651855469 173.293045043945 354.373107910156 0.030273400247097 0.0461426004767418 0.030273400247097 0.030273400247097 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR277W /GEN=FCP1 /DB_XREF=GI:6323933 /SEG=NC_001145:+820255,822453 /DEF=Carboxy-terminal domain (CTD) phosphatase, essential for dephosphorylation of the repeated C-terminal domain of the RNA polymerase II large subunit (Rpo21p) /NOTE=Fcp1p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 11003641]; go_function: phosphoprotein phosphatase activity [goid GO:0004721] [evidence IDA] [pmid 11904169]; go_function: phosphoric monoester hydrolase activity [goid GO:0016791] [evidence TAS] [pmid 11606527]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence IDA] [pmid 11904169]; go_process: transcription [goid GO:0006350] [evidence IMP] [pmid 10445027] --- --- --- --- --- --- S0004890 // FCP1 SGDID:S0004890, Chr XIII from 820255-822453, Verified ORF // sgd // 11 // --- /// GENSCAN00000018946 // cdna:Genscan chromosome:SGD1:XIII:820255:822453:1 // ensembl // 11 // --- /// GENEFINDER00000022038 // cdna:GeneFinder chromosome:SGD1:XIII:820255:822453:1 // ensembl // 11 // --- /// YMR277W // cdna:known chromosome:SGD1:XIII:820255:822453:1 gene:YMR277W // ensembl // 11 // --- --- No cerevisiae_gene 1.10619466546178 -3.11468543354982 -1.6495424599567 -2.13625403971301 -1.04465592694791 Max fold change at or above threshold 4 3.11468543354982 Max fold change at or above threshold 0.913837474702631 -1.06590686365231 -0.637120645658097 0.789190034607777 254.179943084717 126.95695641321 0.499476689122148 PPPPPP Called_P_>2EXP 4 0 PPPP 0 4 0 Yes Yes 3 < x
1771900_at YFL008W.S1 Subunit of the multiprotein cohesin complex, essential protein involved in chromosome segregation and in double-strand DNA break repair; SMC chromosomal ATPase family member, binds DNA with a preference for DNA with secondary structure 3.11447546940111 138.996368408203 427.455749511719 SMC1 70 // mitotic sister chromatid segregation // inferred from mutant phenotype /// 6302 // double-strand break repair // inferred from mutant phenotype /// 7064 // mitotic sister chromatid cohesion // inferred from mutant phenotype 798 // nuclear cohesin complex // inferred from direct assay 217 // DNA secondary structure binding // inferred from direct assay /// 3680 // AT DNA binding // inferred from direct assay /// 3690 // double-stranded DNA binding // inferred from direct assay /// 16887 // ATPase activity // inferred from sequence similarity 384.739990234375 123.532836914063 154.459899902344 470.171508789063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL008W /GEN=SMC1 /DB_XREF=GI:14318514 /SEG=NC_001138:+119424,123101 /DEF=coiled-coil protein involved in chromosome structure or segregation /NOTE=Smc1p; go_component: nuclear cohesin complex [goid GO:0000798] [evidence IDA] [pmid 9990856]; go_function: AT DNA binding [goid GO:0003680] [evidence IDA] [pmid 9727028]; go_function: ATPase activity [goid GO:0016887] [evidence ISS] [pmid 7929577]; go_function: DNA secondary structure binding [goid GO:0000217] [evidence IDA] [pmid 9727028]; go_function: double-stranded DNA binding [goid GO:0003690] [evidence IDA] [pmid 9727028]; go_process: mitotic sister chromatid cohesion [goid GO:0007064] [evidence IMP] [pmid 9335333]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence IMP] [pmid 8276886] --- --- --- --- scop // a.2.9.C-terminal UvrC-binding domain of UvrB // All alpha proteins; Long alpha-hairpin; C-terminal UvrC-binding domain of UvrB; C-terminal UvrC-binding domain of UvrB // 5.0 --- S0001886 // SMC1 SGDID:S0001886, Chr VI from 119424-123101, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018593 // cdna:GeneFinder chromosome:SGD1:VI:119424:123101:1 // ensembl // 11 // --- /// GENSCAN00000023235 // cdna:Genscan chromosome:SGD1:VI:119424:123101:1 // ensembl // 11 // --- /// YFL008W // cdna:known chromosome:SGD1:VI:119424:123101:1 gene:YFL008W // ensembl // 11 // --- --- No cerevisiae_gene -1.59805067418135 -3.11447546940111 -1.2299602294817 -2.49087297400571 1.22205000967704 Max fold change at or above threshold 4 3.11447546940111 Max fold change at or above threshold 0.594961425638209 -0.935943528739427 -0.754683584854777 1.09566568795599 283.226058959961 170.6227108178 0.602425890627248 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776450_at YNL007C.S1 Type II HSP40 co-chaperone that interacts with the HSP70 protein Ssa1p; not functionally redundant with Ydj1p due to due to substrate specificity; shares similarity with bacterial DnaJ proteins 3.11351296079547 6216.77026367188 2368.78662109375 SIS1 6413 // translational initiation // inferred from mutant phenotype /// 6457 // protein folding // inferred from direct assay /// 6457 // protein folding // inferred from mutant phenotype 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // inferred from direct assay 30188 // chaperone regulator activity // inferred from direct assay /// 51082 // unfolded protein binding // traceable author statement 2459.24560546875 7656.89306640625 4776.6474609375 2278.32763671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL007C /GEN=SIS1 /DB_XREF=GI:6324321 /SEG=NC_001146:-618506,619564 /DEF=HSP40 family chaperone /NOTE=Sis1p; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence IDA] [pmid 8513501]; go_function: chaperone activity [goid GO:0003754] [evidence TAS] [pmid 11923285]; go_process: translational initiation [goid GO:0006413] [evidence IMP] [pmid 8513501] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.00000005862444E-25 --- S0004952 // SIS1 SGDID:S0004952, Chr XIV from 619565-618507, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020032 // cdna:Genscan chromosome:SGD1:XIV:618507:619565:-1 // ensembl // 11 // --- /// GENEFINDER00000020514 // cdna:GeneFinder chromosome:SGD1:XIV:618507:619565:-1 // ensembl // 11 // --- /// YNL007C // cdna:known chromosome:SGD1:XIV:618507:619565:-1 gene:YNL007C // ensembl // 11 // --- --- No cerevisiae_gene 1.66666527682226 3.11351296079547 1.04410383329015 1.94232225130968 -1.07940823164949 Max fold change at or above threshold 4 3.11351296079547 Max fold change at or above threshold -0.72912389774768 1.3377760778292 0.19241567846787 -0.801067858549389 4292.77844238281 2514.70681811142 0.585799349270764 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777929_at YLR117C.S1 Essential splicesome assembly factor; contains multiple tetratricopeptide repeat (TPR) protein-binding motifs and interacts specifically with many spliceosome components, may serve as a scaffold during splicesome assembly 3.11255340068692 201.312301635742 476.414077758789 CLF1 398 // nuclear mRNA splicing, via spliceosome // inferred from mutant phenotype /// 6260 // DNA replication // inferred from mutant phenotype /// 7049 // cell cycle // traceable author statement /// 8380 // RNA splicing // inferred from mutant phenotype /// 8380 // RNA splicing // inferred from physical interaction 785 // chromatin // inferred from direct assay /// 5681 // spliceosome complex // inferred from direct assay --- 458.355926513672 147.26042175293 255.364181518555 494.472229003906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR117C /GEN=CLF1 /DB_XREF=GI:6323146 /SEG=NC_001144:-382472,384535 /DEF=SYnthetic lethal with cdcForty; Crooked neck Like Factor, an ortholog of the Drosophila crooked neck gene, crn /NOTE=Clf1p; go_component: chromatin [goid GO:0000785] [evidence IDA] [pmid 11973290]; go_component: spliceosome complex [goid GO:0005681] [evidence IDA] [pmid 10445879]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA replication [goid GO:0006260] [evidence IMP] [pmid 11973290]; go_process: RNA splicing [goid GO:0008380] [evidence IMP,IPI] [pmid 10445879]; go_process: cell cycle [goid GO:0007049] [evidence TAS] [pmid 11102353]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IMP] [pmid 11105756] --- --- --- --- --- --- S0004107 // CLF1 SGDID:S0004107, Chr XII from 384535-382472, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017911 // cdna:Genscan chromosome:SGD1:XII:382472:384535:-1 // ensembl // 11 // --- /// GENEFINDER00000024546 // cdna:GeneFinder chromosome:SGD1:XII:382472:384535:-1 // ensembl // 11 // --- /// YLR117C // cdna:known chromosome:SGD1:XII:382472:384535:-1 gene:YLR117C // ensembl // 11 // --- --- No cerevisiae_gene -1.8922477332289 -3.11255340068692 1.06801114051973 -1.79491079676093 1.07879532127999 Max fold change at or above threshold 4 3.11255340068692 Max fold change at or above threshold 0.721985706937699 -1.1576809063973 -0.504508408248511 0.940203607708112 338.863189697266 165.505681993671 0.488414460542411 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771832_at YEL054C.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl12Bp; rpl12a rpl12b double mutant exhibits slow growth and slow translation; has similarity to E. coli L11 and rat L12 ribosomal proteins /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl12Ap; rpl12a rpl12b double mutant exhibits slow growth and slow translation; has similarity to E. coli L11 and rat L12 ribosomal proteins 3.11243820491296 847.440155029297 2239.07299804688 RPL12A /// RPL12B 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 2335.63354492188 750.419250488281 944.461059570313 2142.51245117188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL054C /GEN=RPL12A /DB_XREF=GI:6320781 /SEG=NC_001137:-52721,53218 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl12Bp; rpl12a rpl12b double mutant exhibits slow growth and slow translation; has similarity to E. coli L11 and rat L12 ribosomal proteins /NOTE=Rpl12ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 9822666] --- --- --- --- --- --- S0000780 // RPL12A SGDID:S0000780, Chr V from 53218-52721, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016759 // cdna:Genscan chromosome:SGD1:V:52721:53218:-1 // ensembl // 11 // --- /// GENEFINDER00000019611 // cdna:GeneFinder chromosome:SGD1:V:52721:53218:-1 // ensembl // 11 // --- /// YEL054C // cdna:known chromosome:SGD1:V:52721:53218:-1 gene:YEL054C // ensembl // 11 // --- YEL053W-A // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene 1.41470927184819 -3.11243820491296 -1.94258969452822 -2.47298024757578 -1.09013767628019 Max fold change at or above threshold 4 3.11243820491296 Max fold change at or above threshold 0.976801102624267 -0.977368607604482 -0.738163960537139 0.738731465517354 1543.25657653809 811.195816891478 0.525638982670785 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776274_at SPBC16E9.09c.S1 --- 3.11162600728652 --- --- --- --- 1.66540789604187 5.18212652206421 4.65032768249512 4.55636739730835 0.398925989866257 0.303710997104645 0.171387001872063 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16E9.09c /DEF=emp24 family --- --- --- --- --- --- SPBC16E9.09c // |||emp24 family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.94987721945185 3.11162600728652 -1.00842858655606 2.79230553280516 2.73588675070975 Max fold change at or above threshold 3 3.11162600728652 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777519_at SPCC1393.11.S1 --- 3.11146947837037 --- --- --- --- 2.78879475593567 4.00607776641846 2.86041903495789 1.91471099853516 0.601073980331421 0.5 0.780517995357513 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1393.11 /DEF=sequence orphan --- --- --- --- --- --- SPCC1393.11 // |||mitochondrial large ribosomal protein subunit L20|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.11146947837037 1.4364907126607 2.96567930400931 1.02568287926882 -1.45650949833642 Max fold change at or above threshold 3 3.11146947837037 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770121_at SPBC2F12.14c.S1 --- 3.11094648253223 --- --- --- --- 6.12243509292603 12.0264081954956 19.0465679168701 15.9307632446289 0.633789002895355 0.5 0.432372987270355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2F12.14c /GEN=gua1 /DEF=IMP dehydrogenase activity --- --- --- --- --- --- SPBC2F12.14c // |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.3483082167877 1.96431779397566 1.57983647096418 3.11094648253223 2.60203056509911 Max fold change at or above threshold 4 3.11094648253223 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769529_s_at SPCP20C8.03.S1 --- 3.11091890569192 --- --- --- --- 1.29391288757324 0.92926150560379 4.02525806427002 1.63085389137268 0.780517995357513 0.696289002895355 0.366210997104645 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP20C8.03 /DEF=possible pseudogene --- --- --- --- --- --- SPCC569.03 // |||B13958 domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPCP20C8.03 // |||possible pseudogene|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.07736336051954 -1.39240986500621 2.72826393792297 3.11091890569192 1.26040470501177 Max fold change at or above threshold 1 3.11091890569192 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770967_at YIL096C.S1 Hypothetical protein 3.10995020788874 75.4436225891113 220.460968017578 --- --- 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 210.5703125 83.1786651611328 67.7085800170898 230.351623535156 0.000732421991415322 0.000244141003349796 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL096C /GEN=FYV10 /DB_XREF=GI:6322095 /SEG=NC_001141:-182114,183124 /DEF=Hypothetical ORF /NOTE=Yil096cp; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001358 // YIL096C SGDID:S0001358, Chr IX from 183124-182114, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YIL096C // cdna:known chromosome:SGD1:IX:182114:183124:-1 gene:YIL096C // ensembl // 11 // --- --- No cerevisiae_gene 1.643480955274 -2.53154233831579 -1.28747163934058 -3.10995020788874 1.09394159509146 Max fold change at or above threshold 4 3.10995020788874 Max fold change at or above threshold 0.74234942469276 -0.767904657861014 -0.951305687161599 0.976860920329852 147.952295303345 84.3511358853296 0.570123874809685 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773790_at SPAC6G9.01c.S1 --- 3.10956420465641 --- --- --- --- 0.992730557918549 2.00034928321838 0.319250702857971 1.98456752300262 0.633789002895355 0.533936023712158 0.780517995357513 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G9.01c /DEF=hypothetical protein --- --- --- --- --- --- SPAC6G9.01c // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.76370520895657 2.01499718857502 1.07224956928009 -3.10956420465641 1.99909986367666 Max fold change at or above threshold 0 3.10956420465641 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776618_at SPBC337.15c.S1 --- 3.10952653666968 --- --- --- --- 3.73014163970947 1.80962467193604 5.34687900543213 1.19958508014679 0.696289002895355 0.665526986122131 0.366210997104645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC337.15c /GEN=coq7 /DEF=involved in ubiquinone biosynthesis (predicted) --- --- --- --- --- --- SPBC337.15c // |coq7||ubiquinone biosynthesis protein Coq7|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.15415035830459 -2.06127916885592 1.72834225227844 1.4334251945051 -3.10952653666968 Max fold change at or above threshold 2 3.10952653666968 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772492_at SPCC330.09.S1 --- 3.10911761510292 --- --- --- --- 3.30691742897034 10.2815952301025 5.38296556472778 6.6669921875 0.334473013877869 0.194580003619194 0.129638999700546 0.018554700538516 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC330.09 /DEF=WD repeat protein --- --- --- --- --- --- SPCC330.09 // |||WD repeat protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 2.18424023214633 3.10911761510292 -1.47140672875333 1.62778952917608 2.01607458628802 Max fold change at or above threshold 4 3.10911761510292 Max fold change at or above threshold APAAAP No 4 0 AAAP 3 1 0 No No x = 1
1774391_at SPAC6C3.06c.S1 --- 3.10697544695802 --- --- --- --- 8.27600193023682 3.07425880432129 4.67304229736328 2.66368436813354 0.0461426004767418 0.334473013877869 0.334473013877869 0.24609400331974 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6C3.06c /DEF=P-type ATPase (PMID 12707717) --- --- --- --- --- --- SPAC6C3.06c // |||P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.58016652715658 -2.69203162681156 -1.72237487203284 -1.77100942033126 -3.10697544695802 Max fold change at or above threshold 4 3.10697544695802 Max fold change at or above threshold PPAAAA No 4 0 PAAA 3 1 0 No No x = 1
1771271_at YKR043C.S1 Hypothetical protein 3.10524320537851 271.116828918457 815.021667480469 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 776.043518066406 249.913925170898 292.319732666016 853.999816894531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR043C /GEN=UTH1 /DB_XREF=GI:6322896 /SEG=NC_001143:-520539,521354 /DEF=Hypothetical ORF /NOTE=Ykr043cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001751 // YKR043C SGDID:S0001751, Chr XI from 521354-520539, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018453 // cdna:Genscan chromosome:SGD1:XI:520539:521354:-1 // ensembl // 11 // --- /// GENEFINDER00000023148 // cdna:GeneFinder chromosome:SGD1:XI:520539:521354:-1 // ensembl // 11 // --- /// YKR043C // cdna:known chromosome:SGD1:XI:520539:521354:-1 gene:YKR043C // ensembl // 11 // --- --- No cerevisiae_gene 2.02157849298336 -3.10524320537851 -1.19772426025459 -2.65477636760519 1.10045351454305 Max fold change at or above threshold 4 3.10524320537851 Max fold change at or above threshold 0.737011668457207 -0.927393801323166 -0.793243472395851 0.983625605261811 543.069248199463 316.106623324744 0.582074246282201 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773066_at YDL117W.S1 SH3-domain protein located in the mother-bud neck and the cytokinetic actin ring; mutant phenotype and genetic interactions suggest a role in cytokinesis 3.10425091493244 267.616020202637 752.088684082031 CYK3 910 // cytokinesis // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay /// 5935 // bud neck // inferred from direct assay --- 747.148376464844 240.685562133789 294.546478271484 757.028991699219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL117W /GEN=CYK3 /DB_XREF=GI:6320086 /SEG=NC_001136:+248581,251238 /DEF=SH3-domain protein located in the mother-bud neck and the cytokinetic actin ring; mutant phenotype and genetic interactions suggest a role in cytokinesis /NOTE=Cyk3p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 14562095]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cytokinesis [goid GO:0000910] [evidence IGI] [pmid 10959846] --- --- --- --- --- --- S0002275 // CYK3 SGDID:S0002275, Chr IV from 248581-251238, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023587 // cdna:GeneFinder chromosome:SGD1:IV:248581:251238:1 // ensembl // 11 // --- /// GENSCAN00000025009 // cdna:Genscan chromosome:SGD1:IV:249118:251238:1 // ensembl // 11 // --- /// YDL117W // cdna:known chromosome:SGD1:IV:248581:251238:1 gene:YDL117W // ensembl // 11 // --- --- No cerevisiae_gene 1.00997501976713 -3.10425091493244 -1.70311764572482 -2.5366060421072 1.01322443512643 Max fold change at or above threshold 4 3.10425091493244 Max fold change at or above threshold 0.845666492954724 -0.959246308387538 -0.767298836079328 0.880878651512141 509.852352142334 280.602372565818 0.550360062843218 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769426_at YPR002W.S1 Mitochondrial protein that participates in respiration, induced by diauxic shift; homologous to E. coli PrpD, may take part in the conversion of 2-methylcitrate to 2-methylisocitrate 3.10363261254834 1181.20568847656 418.207489013672 PDH1 19541 // propionate metabolism // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 398.070465087891 1126.94689941406 1235.46447753906 438.344512939453 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR002W /GEN=PDH1 /DB_XREF=GI:6325258 /SEG=NC_001148:+558380,559930 /DEF=prpD homologue; (62% identical to the prpD genes of Escherichia coli and Salmonella typhimurium, which play an unknown but essential role in propionate catabolism) /NOTE=Pdh1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 11179416]; go_process: propionate metabolism [goid GO:0019541] [evidence IMP] [pmid 11179416] --- --- --- --- --- --- S0006206 // PDH1 SGDID:S0006206, Chr XVI from 558382-559932, Verified ORF // sgd // 11 // --- /// GENSCAN00000017186 // cdna:Genscan chromosome:SGD1:XVI:558382:559932:1 // ensembl // 11 // --- /// GENEFINDER00000020824 // cdna:GeneFinder chromosome:SGD1:XVI:558382:559932:1 // ensembl // 11 // --- /// YPR002W // cdna:known chromosome:SGD1:XVI:558382:559932:1 gene:YPR002W // ensembl // 11 // --- --- No cerevisiae_gene 1.73663944259928 2.83102364593978 1.52839307471734 3.10363261254834 1.10117316250195 Max fold change at or above threshold 4 3.10363261254834 Max fold change at or above threshold -0.906536757778765 0.738617252718831 0.983553322063527 -0.815633817003593 799.706588745117 443.044498980199 0.554008814252006 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778098_at YPR046W.S1 Protein involved in kinetochore-microtubule mediated chromosome segregation; binds to centromere DNA 3.10330715493613 280.076957702637 329.934555053711 MCM16 7059 // chromosome segregation // inferred from physical interaction 778 // condensed nuclear chromosome kinetochore // inferred from direct assay 5515 // protein binding // inferred from direct assay 287.136932373047 306.610382080078 253.543533325195 372.732177734375 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR046W /GEN=MCM16 /DB_XREF=GI:6325303 /SEG=NC_001148:+656794,657339 /DEF=Involved in a nonessential role that governs the kinetochore-microtubule mediated process of chromosome segregation /NOTE=Mcm16p; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IDA] [pmid 11782448]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 11782448]; go_process: chromosome segregation [goid GO:0007059] [evidence IPI] [pmid 11782448] --- --- --- --- --- --- S0006250 // MCM16 SGDID:S0006250, Chr XVI from 656796-657341, Verified ORF // sgd // 11 // --- /// GENSCAN00000017220 // cdna:Genscan chromosome:SGD1:XVI:656796:657341:1 // ensembl // 11 // --- /// GENEFINDER00000020871 // cdna:GeneFinder chromosome:SGD1:XVI:656796:657341:1 // ensembl // 11 // --- /// YPR046W // cdna:known chromosome:SGD1:XVI:656796:657341:1 gene:YPR046W // ensembl // 11 // --- --- No cerevisiae_gene 3.10330715493613 1.0678193834074 -1.20060016590886 -1.13249558609237 1.29809904512779 Max fold change at or above threshold 4 3.10330715493613 Max fold change at or above threshold -0.356023827280777 0.0319710454130142 -1.0253488201821 1.34940160204986 305.005756378174 50.1899666143265 0.164554161896199 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778067_at SPBP4G3.02.S1 --- 3.10295296673274 --- --- --- --- 6.77187442779541 18.2515048980713 21.0128078460693 9.38646984100342 0.194580003619194 0.171387001872063 0.129638999700546 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP4G3.02 /GEN=pho1 /DEF=acid phosphatase activity (PMID 4092931) --- --- --- --- --- --- SPBP4G3.02 // |pho1||acid phosphatase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.50423376720493 2.69519246003105 -1.22882321659196 3.10295296673274 1.38609626346234 Max fold change at or above threshold 4 3.10295296673274 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771097_at SPAC343.15.S1 --- 3.10229920088026 --- --- --- --- 1.80711507797241 5.60621166229248 2.90650510787964 1.29543137550354 0.5 0.725830018520355 0.780517995357513 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC343.15 /DEF=tRNA isopentenyltransferase (predicted) --- --- --- --- --- --- SPAC343.15 // |||tRNA isopentenyltransferase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.03370567389186 3.10229920088026 1.19488824593415 1.60836747106374 -1.39499097531892 Max fold change at or above threshold 2 3.10229920088026 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775288_at SPAC821.06.S1 --- 3.10227132497112 --- --- --- --- 5.84248733520508 18.1249809265137 14.7671337127686 6.16806030273438 0.129638999700546 0.0805663987994194 0.0375977009534836 0.0239257998764515 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC821.06 /GEN=spn2 /DEF=septin (predicted) --- --- --- --- --- --- U29888 // Schizosaccharomyces pombe septin homolog (Spn2+) mRNA, complete cds. // gb // 10 // --- /// SPAC821.06 // |spn2||septin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.1572765061965 3.10227132497112 -1.21720899690348 2.52754227189954 1.05572506175024 Max fold change at or above threshold 4 3.10227132497112 Max fold change at or above threshold AAAPPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1779790_at YNR063W.S1 Hypothetical protein 3.10220338542005 21.4392147064209 7.64278173446655 --- --- --- --- 10.5549774169922 21.986083984375 20.8923454284668 4.73058605194092 0.111571997404099 0.0676269978284836 0.0239257998764515 0.0461426004767418 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR063W /GEN=FRE4 /DB_XREF=GI:6324391 /SEG=NC_001146:+746940,748763 /DEF=Hypothetical ORF /NOTE=Ynr063wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005346 // YNR063W SGDID:S0005346, Chr XIV from 746941-748764, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020089 // cdna:Genscan chromosome:SGD1:XIV:746941:748764:1 // ensembl // 11 // --- /// YNR063W // cdna:known chromosome:SGD1:XIV:746941:748764:1 gene:YNR063W // ensembl // 11 // --- --- No cerevisiae_gene 3.10220338542005 2.08300625532179 2.02750509229744 1.97938324290801 -2.23121983219427 Max fold change at or above threshold 4 3.10220338542005 Max fold change at or above threshold -0.478819045435851 0.894337745449491 0.76295286887211 -1.17847156888575 14.5409982204437 8.32469142872797 0.572497933259079 APAPPP Called_P_>2EXP 4 0 AAPP 2 2 0 Yes No 1 < x = 2
1772147_at YDL175C.S1 RING finger protein that interacts with the arginine methyltransferase Hmt1p; may regulate methylation of Npl3p, which modulates Npl3p function in mRNA processing and export; has similarity to Air1p 3.10159240715532 633.874877929688 216.482398986816 AIR2 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 16075 // rRNA catabolism // inferred from genetic interaction /// 16077 // snoRNA catabolism // inferred from genetic interaction /// 16078 // tRNA catabolism // inferred from direct assay 5634 // nucleus // inferred from physical interaction /// 31499 // TRAMP complex // inferred from physical interaction /// 31499 // TRAMP complex // inferred from direct assay --- 209.044662475586 648.371337890625 619.37841796875 223.920135498047 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL175C /GEN=AIR2 /DB_XREF=GI:6320026 /SEG=NC_001136:-144485,145519 /DEF=arginine methyltransferase-interacting RING finger protein /NOTE=Air2p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 10896665]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 10896665] --- --- --- --- --- --- S0002334 // AIR2 SGDID:S0002334, Chr IV from 145519-144485, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024971 // cdna:Genscan chromosome:SGD1:IV:144485:145519:-1 // ensembl // 11 // --- /// YDL175C // cdna:known chromosome:SGD1:IV:144485:145519:-1 gene:YDL175C // ensembl // 11 // --- --- No cerevisiae_gene 2.54418311423158 3.10159240715532 -1.10709796987406 2.96289994029906 1.07115930560628 Max fold change at or above threshold 4 3.10159240715532 Max fold change at or above threshold -0.895526184568391 0.924773190505794 0.804644373002266 -0.833891378939669 425.178638458252 241.348583332417 0.567640425698656 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774624_at SPBC146.05c.S1 --- 3.09942263690145 --- --- --- --- 2.01103687286377 1.9835501909256 6.23305320739746 2.27529788017273 0.366210997104645 0.303710997104645 0.0952147990465164 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC146.05c /GEN=cwf25 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC146.05c // |cwf25||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.696264804562 -1.01385731607091 2.54530676119456 3.09942263690145 1.131405351575 Max fold change at or above threshold 1 3.09942263690145 Max fold change at or above threshold AMAMAA No 4 0 AAAA 4 0 0 No No x = 1
1775830_at SPCC965.10.S1 --- 3.09812566275049 --- --- --- --- 0.334390580654144 1.03598403930664 0.770562529563904 0.419296652078629 0.962401986122131 0.888427972793579 0.932372987270355 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC965.10 /DEF=transcription factor (predicted) --- --- --- --- --- --- SPCC965.10 // |||transcription factor |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.45611181390563 3.09812566275049 -1.41861836036046 2.30437869409033 1.25391286817466 Max fold change at or above threshold 0 3.09812566275049 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775504_at SPCC1902.01.S1 --- 3.09692222969695 --- --- --- --- 2.94066691398621 6.86662817001343 4.11670970916748 0.958437502384186 0.657470703125 0.5 0.601073980331421 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1902.01 /GEN=gaf1 /DEF=transcription factor (PMID 9714831) --- --- --- --- --- --- SPCC1902.01 // |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.09692222969695 2.335058124861 1.87615796302448 1.3999238368643 -3.06818849082081 Max fold change at or above threshold 3 3.09692222969695 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769937_at YBR084W.S1 Mitochondrial C1-tetrahydrofolate synthase, involved in interconversion between different oxidation states of tetrahydrofolate (THF); provides activities of formyl-THF synthetase, methenyl-THF cyclohydrolase, and methylene-THF dehydrogenase 3.09617256362723 561.292724609375 603.6826171875 MIS1 1718 // conversion of met-tRNAf to fmet-tRNA // inferred from mutant phenotype /// 6139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolism // inferred from mutant phenotype /// 19415 // acetate biosynthesis from carbon monoxide // inferred from direct assay /// 19653 // purine fermentation // inferred from direct assay /// 46656 // folic acid biosynthesis // inferred from direct assay 5739 // mitochondrion // inferred from direct assay 4329 // formate-tetrahydrofolate ligase activity // inferred from direct assay /// 4477 // methenyltetrahydrofolate cyclohydrolase activity // inferred from direct assay /// 4488 // methylenetetrahydrofolate dehydrogenase (NADP+) activity // inferred from direct assay 562.87548828125 501.862670898438 620.722778320313 644.48974609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR084W /GEN=MIS1 /DB_XREF=GI:6319558 /SEG=NC_001134:+411011,413938 /DEF=mitochondrial C1-tetrahydroflate synthase /NOTE=Mis1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 3528153]; go_function: formate-tetrahydrofolate ligase activity [goid GO:0004329] [evidence IDA] [pmid 3528153]; go_function: methenyltetrahydrofolate cyclohydrolase activity [goid GO:0004477] [evidence IDA] [pmid 3528153]; go_function: methylenetetrahydrofolate dehydrogenase (NADP+) activity [goid GO:0004488] [evidence IDA] [pmid 3528153]; go_process: acetate biosynthesis from carbon monoxide [goid GO:0019415] [evidence IDA] [pmid 3528153]; go_process: conversion of met-tRNAf to fmet-tRNA [goid GO:0001718] [evidence IMP] [pmid 10781559]; go_process: folic acid biosynthesis [goid GO:0046656] [evidence IDA] [pmid 3528153]; go_process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism [goid GO:0006139] [evidence IMP] [pmid 10781559]; go_process: purine fermentation [goid GO:0019653] [evidence IDA] [pmid 3528153] --- --- --- --- --- --- S0000288 // MIS1 SGDID:S0000288, Chr II from 411048-413975, Verified ORF // sgd // 10 // --- /// GENSCAN00000021207 // cdna:Genscan chromosome:SGD1:II:411048:413975:1 // ensembl // 10 // --- /// GENEFINDER00000022233 // cdna:GeneFinder chromosome:SGD1:II:411048:413975:1 // ensembl // 10 // --- /// YBR084W // cdna:known chromosome:SGD1:II:411048:413975:1 gene:YBR084W // ensembl // 10 // --- --- No cerevisiae_gene 3.09617256362723 -1.12157273477541 -1.36115814317297 1.10277102350948 1.14499522454195 Max fold change at or above threshold 4 3.09617256362723 Max fold change at or above threshold -0.307654424859059 -1.26475663053044 0.599790457437022 0.972620597952473 582.487670898438 63.7474420404391 0.109439985128121 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776178_at YDR132C.S1 Hypothetical protein 3.09585590795733 389.461212158203 137.331077575684 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 127.172775268555 393.708587646484 385.213836669922 147.489379882813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR132C /GEN=FIN1 /DB_XREF=GI:6320337 /SEG=NC_001136:-718810,720297 /DEF=Hypothetical ORF /NOTE=Ydr132cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 7.30000019073486 --- S0002539 // YDR132C SGDID:S0002539, Chr IV from 720298-718811, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENEFINDER00000023947 // cdna:GeneFinder chromosome:SGD1:IV:718811:720298:-1 // ensembl // 10 // --- /// GENSCAN00000025195 // cdna:Genscan chromosome:SGD1:IV:718811:720217:-1 // ensembl // 10 // --- /// YDR132C // cdna:known chromosome:SGD1:IV:718811:720298:-1 gene:YDR132C // ensembl // 10 // --- --- No cerevisiae_gene 1.33414902941365 3.09585590795733 1.59359545593891 3.02905897788622 1.15975592709489 Max fold change at or above threshold 4 3.09585590795733 Max fold change at or above threshold -0.934030028045134 0.893501129379231 0.835255965452755 -0.794727066786851 263.396144866943 145.844743218262 0.553708723762592 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771874_at SPBC19F8.04c.S1 --- 3.09365227135099 --- --- --- --- 0.354637444019318 0.54914379119873 1.09712493419647 0.488092333078384 0.850341975688934 0.981445014476776 0.904784977436066 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19F8.04c /DEF=nuclease (predicted) --- --- --- --- --- --- SPBC19F8.04c // |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.34262043497385 1.54846534244934 1.5652180928225 3.09365227135099 1.37631358817203 Max fold change at or above threshold 0 3.09365227135099 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778758_at YDR255C.S1 Cytosolic protein required for sporulation; also required for the ubiquitination of the gluconeogenetic enzyme fructose-1,6-bisphosphatase, which is degraded rapidly after the switch from gluconeogenesis to glycolysis 3.09360405442782 736.869354248047 320.713363647461 RMD5 45721 // negative regulation of gluconeogenesis // inferred from mutant phenotype 5829 // cytosol // inferred from direct assay --- 282.791473388672 598.893859863281 874.844848632813 358.63525390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR255C /GEN=RMD5 /DB_XREF=GI:6320461 /SEG=NC_001136:-966549,967814 /DEF=Cytosolic protein required for sporulation; also required for the ubiquitination of the gluconeogenetic enzyme fructose-1,6-bisphosphatase, which is degraded rapidly after the switch from gluconeogenesis to glycolysis /NOTE=Rmd5p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 12686616]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: negative regulation of gluconeogenesis [goid GO:0045721] [evidence IMP] [pmid 12686616] --- --- --- --- scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 5.0 S0002663 // span:301-323 // numtm:1 S0002663 // RMD5 SGDID:S0002663, Chr IV from 967816-966551, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025295 // cdna:Genscan chromosome:SGD1:IV:966551:967816:-1 // ensembl // 11 // --- /// YDR255C // cdna:known chromosome:SGD1:IV:966551:967816:-1 gene:YDR255C // ensembl // 11 // --- --- No cerevisiae_gene -1.10024134872225 2.11779320177789 2.02811392551091 3.09360405442782 1.26819684345057 Max fold change at or above threshold 4 3.09360405442782 Max fold change at or above threshold -0.920768092878892 0.26239095976542 1.29526487789715 -0.636887744783675 528.791358947754 267.168125678567 0.505242986969769 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777302_at YOR027W.S1 Hsp90 cochaperone, interacts with the Ssa group of the cytosolic Hsp70 chaperones; activates the ATPase activity of Ssa1p; homolog of mammalian Hop protein 3.09256562594879 9014.17065429688 3475.48095703125 STI1 6457 // protein folding // inferred from mutant phenotype /// 6457 // protein folding // inferred from genetic interaction 5737 // cytoplasm // inferred from physical interaction 4857 // enzyme inhibitor activity // inferred from direct assay /// 51082 // unfolded protein binding // traceable author statement 3661.94482421875 11324.8046875 6703.53662109375 3289.01708984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR027W /GEN=STI1 /DB_XREF=GI:6324601 /SEG=NC_001147:+381052,382821 /DEF=Heat shock protein also induced by canavanine and entry into stationary phase /NOTE=Sti1p; go_component: cytoplasm [goid GO:0005737] [evidence IPI] [pmid 12525481]; go_function: chaperone activity [goid GO:0003754] [evidence TAS] [pmid 11923285]; go_function: enzyme inhibitor activity [goid GO:0004857] [evidence IDA] [pmid 12525481]; go_process: protein folding [goid GO:0006457] [evidence IGI,IMP] [pmid 8972212] --- --- --- --- --- --- S0005553 // STI1 SGDID:S0005553, Chr XV from 381052-382821, Verified ORF // sgd // 11 // --- /// GENSCAN00000017485 // cdna:Genscan chromosome:SGD1:XV:381052:382821:1 // ensembl // 11 // --- /// GENEFINDER00000022889 // cdna:GeneFinder chromosome:SGD1:XV:381052:382821:1 // ensembl // 11 // --- /// YOR027W // cdna:known chromosome:SGD1:XV:381052:382821:1 gene:YOR027W // ensembl // 11 // --- --- No cerevisiae_gene 1.34247778866864 3.09256562594879 -1.1094988464392 1.83059465471982 -1.11338576972633 Max fold change at or above threshold 4 3.09256562594879 Max fold change at or above threshold -0.695081034302683 1.3670769194508 0.123444010903003 -0.795439896051117 6244.82580566406 3715.94224842648 0.595043378961206 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772013_at SPAC2F7.06c.S1 --- 3.09103560788867 --- --- --- --- 0.740857183933258 2.00213122367859 1.85017001628876 0.48247504234314 0.904784977436066 0.888427972793579 0.850341975688934 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F7.06c /DEF=DNA polymerase X family --- --- --- --- --- --- SPAC2F7.06c // |||DNA polymerase X family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 3.09103560788867 2.70245233102708 1.52692175346097 2.49733694484285 -1.53553473011844 Max fold change at or above threshold 0 3.09103560788867 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777247_at YIL049W.S1 Protein of unknown function, involved in filamentous growth 3.09071457410926 286.492797851563 337.997787475586 DFG10 7124 // pseudohyphal growth // inferred from mutant phenotype --- --- 311.182525634766 316.705383300781 256.280212402344 364.813049316406 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL049W /GEN=DFG10 /DB_XREF=GI:6322140 /SEG=NC_001141:+260157,260918 /DEF=Protein of unknown function, involved in filamentous growth /NOTE=Dfg10p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 9055077] --- --- --- --- --- S0001311 // span:13-30,75-97,121-143,212-229 // numtm:4 S0001311 // DFG10 SGDID:S0001311, Chr IX from 260157-260918, Verified ORF // sgd // 11 // --- /// YIL049W // cdna:known chromosome:SGD1:IX:260157:260918:1 gene:YIL049W // ensembl // 11 // --- --- No cerevisiae_gene 3.09071457410926 1.0177479685106 -1.44763613395593 -1.21422767180413 1.17234426506515 Max fold change at or above threshold 4 3.09071457410926 Max fold change at or above threshold -0.0239313367459976 0.100432106062161 -1.26021898068265 1.18371821136648 312.245292663574 44.4090123376136 0.142224761689079 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769643_at YBR169C.S1 Member of the heat shock protein 70 (HSP70) family; may be involved in protein folding; localized to the cytoplasm; highly homologous to the heat shock protein Sse1p 3.09043856783989 4379.14807128906 1745.21923828125 SSE2 6457 // protein folding // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay --- 1719.91479492188 5315.291015625 3443.00512695313 1770.52368164063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR169C /GEN=SSE2 /DB_XREF=GI:6319646 /SEG=NC_001134:-573872,575953 /DEF=HSP70 family member, highly homologous to Sse1p /NOTE=Sse2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: heat shock protein activity [goid GO:0003773] [evidence ISS] [pmid 8406043]; go_process: protein folding [goid GO:0006457] [evidence ISS] [pmid 8406043] --- --- --- --- scop // a.4.5.TnsA endonuclease, C-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; TnsA endonuclease, C-terminal domain // 3.20000004768372 --- S0000373 // SSE2 SGDID:S0000373, Chr II from 575991-573910, reverse complement, Verified ORF // sgd // 11 // --- /// D38369 // Saccharomyces cerevisiae mRNA for Sse2 protein, complete cds. // gb // 11 // --- /// GENSCAN00000021276 // cdna:Genscan chromosome:SGD1:II:573910:575991:-1 // ensembl // 11 // --- /// GENEFINDER00000022137 // cdna:GeneFinder chromosome:SGD1:II:573910:575991:-1 // ensembl // 11 // --- /// YBR169C // cdna:known chromosome:SGD1:II:573910:575991:-1 gene:YBR169C // ensembl // 11 // --- --- No cerevisiae_gene 1.50133978804989 3.09043856783989 1.07438190680719 2.00184633396884 1.02942522901028 Max fold change at or above threshold 4 3.09043856783989 Max fold change at or above threshold -0.788588705441857 1.32371022679256 0.223734246335707 -0.758855767686408 3062.18365478516 1702.11524791138 0.555850151329608 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777403_at YHR148W.S1 Component of the SSU processome, which is required for pre-18S rRNA processing, essential protein that interacts with Mpp10p and mediates interactions of Imp4p and Mpp10p with U3 snoRNA 3.09040921785844 107.411170959473 286.254241943359 IMP3 154 // rRNA modification // traceable author statement /// 6365 // 35S primary transcript processing // traceable author statement /// 7046 // ribosome biogenesis // traceable author statement /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5732 // small nucleolar ribonucleoprotein complex // traceable author statement /// 5732 // small nucleolar ribonucleoprotein complex // inferred from direct assay /// 30532 // small nuclear ribonucleoprotein complex // traceable author statement 30515 // snoRNA binding // inferred from sequence similarity 268.3251953125 86.8251342773438 127.997207641602 304.183288574219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR148W /GEN=IMP3 /DB_XREF=GI:6321942 /SEG=NC_001140:+393535,394086 /DEF=Component of the SSU processome, which is required for pre-18S rRNA processing, essential protein that interacts with Mpp10p and mediates interactions of Imp4p and Mpp10p with U3 snoRNA /NOTE=Imp3p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence TAS] [pmid 10690410]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence TAS] [pmid 10690410]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IDA] [pmid 12068309]; go_function: snoRNA binding [goid GO:0030515] [evidence ISS] [pmid 10409734]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IPI] [pmid 12068309]; go_process: rRNA modification [goid GO:0000154] [evidence TAS] [pmid 10690410]; go_process: ribosome biogenesis [goid GO:0007046] [evidence TAS] [pmid 11087857] --- --- --- --- --- --- S0001191 // IMP3 SGDID:S0001191, Chr VIII from 393536-394087, Verified ORF // sgd // 11 // --- /// GENSCAN00000016676 // cdna:Genscan chromosome:SGD1:VIII:393536:394087:1 // ensembl // 11 // --- /// YHR148W // cdna:known chromosome:SGD1:VIII:393536:394087:1 gene:YHR148W // ensembl // 11 // --- GENEFINDER00000020282 // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene 1.7090782122905 -3.09040921785844 1.0562279356905 -2.09633632058462 1.13363669863338 Max fold change at or above threshold 4 3.09040921785844 Max fold change at or above threshold 0.676797437574444 -1.04140790378505 -0.651644528688391 1.016254994899 196.832706451416 105.633509957283 0.536666450721983 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774412_at SPBC409.14c.S1 --- 3.08915084955561 --- --- --- --- 0.518067836761475 0.167705580592155 0.741786420345306 0.223429173231125 0.828612983226776 0.981445014476776 0.932372987270355 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC409.14c /GEN=mrps17 /DEF=mitochondrial ribosomal protein subunit s17 --- --- --- --- --- --- SPBC409.14c // |mrps17||mitochondrial ribosomal protein subunit S17|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.54848608262098 -3.08915084955561 1.54176806566605 1.43183260513205 -2.31871169404348 Max fold change at or above threshold 0 3.08915084955561 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778608_at YMR204C.S1 Peripheral membrane protein of peroxisomes involved in peroxisomal inheritance 3.08876112356523 226.98314666748 690.208190917969 INP1 45033 // peroxisome inheritance // inferred from mutant phenotype /// 45033 // peroxisome inheritance // inferred from physical interaction 5777 // peroxisome // inferred from direct assay /// 5780 // extrinsic to intraperoxisomal membrane // inferred from direct assay --- 662.198364257813 214.389633178711 239.57666015625 718.218017578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR204C /GEN=TOM40 /DB_XREF=GI:6323860 /SEG=NC_001145:-670062,671324 /DEF=Hypothetical ORF /NOTE=Ymr204cp; go_component: peroxisome [goid GO:0005777] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004817 // YMR204C SGDID:S0004817, Chr XIII from 671324-670062, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YMR204C // cdna:known chromosome:SGD1:XIII:670062:671324:-1 gene:YMR204C // ensembl // 11 // --- --- No cerevisiae_gene -1.8370437120567 -3.08876112356523 1.17333925805326 -2.76403537734407 1.08459648399026 Max fold change at or above threshold 4 3.08876112356523 Max fold change at or above threshold 0.757969230882529 -0.909126770489956 -0.815360863202857 0.966518402810284 458.595668792725 268.616042933598 0.585736109633881 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771531_at YJL139C.S1 Mannosyltransferase of the KTR1 family, involved in protein N-glycosylation; located in the Golgi apparatus 3.08788556905733 202.50414276123 309.658981323242 YUR1 32 // cell wall mannoprotein biosynthesis // inferred from mutant phenotype /// 6487 // N-linked glycosylation // inferred from mutant phenotype 5794 // Golgi apparatus // inferred from direct assay 30 // mannosyltransferase activity // inferred from direct assay 250.505035400391 150.354309082031 254.65397644043 368.812927246094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL139C /GEN=YUR1 /DB_XREF=GI:6322322 /SEG=NC_001142:-151631,152917 /DEF=Mannosyltransferase of the KTR1 family, involved in protein N-glycosylation; located in the Golgi apparatus /NOTE=Yur1p; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 8631921]; go_function: mannosyltransferase activity [goid GO:0000030] [evidence IDA] [pmid 8631921]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IMP] [pmid 8631921]; go_process: cell wall mannoprotein biosynthesis [goid GO:0000032] [evidence IMP] [pmid 8631921] --- --- --- --- --- S0003675 // span:7-24 // numtm:1 S0003675 // YUR1 SGDID:S0003675, Chr X from 152917-151631, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024032 // cdna:Genscan chromosome:SGD1:X:151631:152917:-1 // ensembl // 11 // --- /// GENEFINDER00000024459 // cdna:GeneFinder chromosome:SGD1:X:151631:152917:-1 // ensembl // 11 // --- /// YJL139C // cdna:known chromosome:SGD1:X:151631:152917:-1 gene:YJL139C // ensembl // 11 // --- --- No cerevisiae_gene 1.94702242747165 -1.66609814464126 3.08788556905733 1.01656230595687 1.47227749995767 Max fold change at or above threshold 4 3.08788556905733 Max fold change at or above threshold -0.0624519646792757 -1.18404790142313 -0.0159876445154331 1.26248751061784 256.081562042236 89.2930537971728 0.348689898191286 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769434_at YDR465C.S1 Arginine methyltransferase; ribosomal protein L12 is a substrate 3.08651364686211 84.0353889465332 242.783432006836 RMT2 18216 // peptidyl-arginine methylation // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 16274 // protein-arginine N-methyltransferase activity // inferred from sequence similarity /// 16274 // protein-arginine N-methyltransferase activity // inferred from direct assay 225.698272705078 73.1240158081055 94.9467620849609 259.868591308594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR465C /GEN=RMT2 /DB_XREF=GI:6320673 /SEG=NC_001136:-1393324,1394562 /DEF=Arginine methyltransferase; ribosomal protein L12 is a substrate /NOTE=Rmt2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: protein-arginine N-methyltransferase activity [goid GO:0016274] [evidence IDA,ISS] [pmid 11856739]; go_process: peptidyl-arginine methylation [goid GO:0018216] [evidence IDA] --- --- --- --- --- --- S0002873 // RMT2 SGDID:S0002873, Chr IV from 1394564-1393326, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023862 // cdna:GeneFinder chromosome:SGD1:IV:1393326:1394564:-1 // ensembl // 11 // --- /// GENSCAN00000025465 // cdna:Genscan chromosome:SGD1:IV:1393326:1394564:-1 // ensembl // 11 // --- /// YDR465C // cdna:known chromosome:SGD1:IV:1393326:1394564:-1 gene:YDR465C // ensembl // 11 // --- --- No cerevisiae_gene 2.55113869838356 -3.08651364686211 -1.064065674503 -2.37710341826209 1.15139822823618 Max fold change at or above threshold 4 3.08651364686211 Max fold change at or above threshold 0.66879572870159 -0.969394594126307 -0.735083692042651 1.03568255746737 163.409410476685 93.1358553221057 0.569954050078373 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779399_at YPL274W.S1 High-affinity S-adenosylmethionine permease, required for utilization of S-adenosylmethionine as a sulfur source; has similarity to S-methylmethionine permease Mmp1p 3.08570619475517 2865.69958496094 1010.02130126953 SAM3 15805 // S-adenosylmethionine transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from mutant phenotype 95 // S-adenosylmethionine transporter activity // inferred from sequence similarity /// 95 // S-adenosylmethionine transporter activity // inferred from mutant phenotype 958.686889648438 2773.17309570313 2958.22607421875 1061.35571289063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL274W /GEN=SAM3 /DB_XREF=GI:6324981 /SEG=NC_001148:+22938,24701 /DEF=S-adenosylMethionine Permease /NOTE=Sam3p; go_component: plasma membrane [goid GO:0005886] [evidence IMP,ISS] [pmid 10497160]; go_function: S-adenosylmethionine transporter activity [goid GO:0000095] [evidence IMP,ISS] [pmid 10497160]; go_process: S-adenosylmethionine transport [goid GO:0015805] [evidence IMP] [pmid 10497160] --- --- --- --- --- S0006195 // span:81-103,110-129,161-183,190-212,216-238,303-325,358-380,407-424,434-456,476-498,513-535 // numtm:11 S0006195 // SAM3 SGDID:S0006195, Chr XVI from 22938-24701, Verified ORF // sgd // 11 // --- /// GENSCAN00000016972 // cdna:Genscan chromosome:SGD1:XVI:22938:24701:1 // ensembl // 11 // --- /// GENEFINDER00000020723 // cdna:GeneFinder chromosome:SGD1:XVI:22938:24701:1 // ensembl // 11 // --- /// YPL274W // cdna:known chromosome:SGD1:XVI:22938:24701:1 gene:YPL274W // ensembl // 11 // --- --- No cerevisiae_gene 1.38415430041116 2.89267864789523 1.34988679660429 3.08570619475517 1.10709317541605 Max fold change at or above threshold 4 3.08570619475517 Max fold change at or above threshold -0.91098267616804 0.77714042929096 0.949306085730687 -0.815463838853606 1937.86044311523 1074.85419765126 0.554660270542167 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773063_at YMR304W.S1 Ubiquitin-specific protease that may play a role in ubiquitin precursor processing 3.08500446107064 613.803863525391 785.846496582031 UBP15 16579 // protein deubiquitination // traceable author statement 5737 // cytoplasm // inferred from curator 4843 // ubiquitin-specific protease activity // traceable author statement 749.723022460938 550.777160644531 676.83056640625 821.969970703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR304W /GEN=UBP15 /DB_XREF=GI:6323962 /SEG=NC_001145:+874986,878678 /DEF=Ubiquitin-specific protease that may play a role in ubiquitin precursor processing /NOTE=Ubp15p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 8982460]; go_function: ubiquitin-specific protease activity [goid GO:0004843] [evidence TAS] [pmid 8982460]; go_process: protein deubiquitination [goid GO:0016579] [evidence TAS] [pmid 8982460] --- --- --- --- scop // a.2.7.Valyl-tRNA synthetase (ValRS) C-terminal domain // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Valyl-tRNA synthetase (ValRS) C-terminal domain // 1.10000002384186 --- S0004920 // UBP15 SGDID:S0004920, Chr XIII from 874986-878678, Verified ORF // sgd // 11 // --- /// GENSCAN00000018970 // cdna:Genscan chromosome:SGD1:XIII:874986:878678:1 // ensembl // 11 // --- /// GENEFINDER00000022051 // cdna:GeneFinder chromosome:SGD1:XIII:874986:878678:1 // ensembl // 11 // --- /// YMR304W // cdna:known chromosome:SGD1:XIII:874986:878678:1 gene:YMR304W // ensembl // 11 // --- --- No cerevisiae_gene -3.08500446107064 -1.36120935295065 1.15915049030965 -1.1076967555436 1.09636485218907 Max fold change at or above threshold 4 3.08500446107064 Max fold change at or above threshold 0.431302787755085 -1.28832877694213 -0.19875891403402 1.05578490322106 699.825180053711 115.690980498742 0.165314115290711 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777455_at YDR173C.S1 Protein involved in regulation of arginine-responsive and Mcm1p-dependent genes; has a dual-specificity inositol polyphosphate kinase activity required for regulation of phosphate- and nitrogen-responsive genes 3.08438738917981 461.162689208984 218.164642333984 ARG82 6525 // arginine metabolism // inferred from mutant phenotype /// 16310 // phosphorylation // inferred from direct assay 5634 // nucleus // inferred from direct assay 4428 // inositol or phosphatidylinositol kinase activity // inferred from direct assay 188.588302612305 481.830352783203 440.495025634766 247.740982055664 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR173C /GEN=ARG82 /DB_XREF=GI:6320378 /SEG=NC_001136:-810559,811626 /DEF=Regulator of arginine-responsive genes with ARG80 and ARG81 /NOTE=Arg82p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 3311884]; go_function: inositol/phosphatidylinositol kinase activity [goid GO:0004428] [evidence IDA] [pmid 11311242]; go_process: arginine metabolism [goid GO:0006525] [evidence IMP] [pmid 8043104]; go_process: phosphorylation [goid GO:0016310] [evidence IDA] [pmid 11311242] --- --- --- --- --- --- S0002580 // ARG82 SGDID:S0002580, Chr IV from 811627-810560, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023440 // cdna:GeneFinder chromosome:SGD1:IV:810560:811627:-1 // ensembl // 11 // --- /// YDR173C // cdna:known chromosome:SGD1:IV:810560:811627:-1 gene:YDR173C // ensembl // 11 // --- --- No cerevisiae_gene 3.08438738917981 2.5549323373133 1.34464128820001 2.33574945812161 1.31366038414887 Max fold change at or above threshold 4 3.08438738917981 Max fold change at or above threshold -1.05385565203643 0.991711444577064 0.703368810588108 -0.641224603128737 339.663665771484 143.354891979036 0.422049534363446 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779165_s_at YAR009C.S1 TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// Ty ORF /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition 3.08295393540695 14.0628461837769 31.4777545928955 --- 6319 // Ty element transposition // inferred from sequence similarity 943 // retrotransposon nucleocapsid // inferred from sequence similarity 3723 // RNA binding // inferred from sequence similarity /// 3887 // DNA-directed DNA polymerase activity // inferred from sequence similarity /// 3964 // RNA-directed DNA polymerase activity // inferred from sequence similarity /// 4540 // ribonuclease activity // inferred from sequence similarity /// 5515 // protein binding // inferred from sequence similarity /// 8233 // peptidase activity // inferred from sequence similarity 31.7211761474609 10.2892150878906 17.8364772796631 31.2343330383301 0.00195312988944352 0.0561522990465164 0.00195312988944352 0.00122069998178631 P M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR009C /GEN=SEN34 /DB_XREF=GI:6319323 /SEG=NC_001133:-160600,164190 /DEF=TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /NOTE=Yar009cp; go_component: retrotransposon nucleocapsid [goid GO:0000943] [evidence ISS] [pmid 9582191]; go_function: DNA-directed DNA polymerase activity [goid GO:0003887] [evidence ISS] [pmid 9582191]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 9582191]; go_function: RNA-directed DNA polymerase activity [goid GO:0003964] [evidence ISS] [pmid 9582191]; go_function: peptidase activity [goid GO:0008233] [evidence ISS] [pmid 9582191]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 9582191]; go_function: ribonuclease activity [goid GO:0004540] [evidence ISS] [pmid 9582191]; go_process: Ty element transposition [goid GO:0006319] [evidence ISS] [pmid 9582191] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.60000002384186 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.70000004768372 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.79999995231628 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.5 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.59999990463257 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.70000004768372 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.79999995231628 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.90000009536743 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 4.59999990463257 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.69999980926514 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.80000019073486 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.90000009536743 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 6.30000019073486 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 7.90000009536743 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 9.19999980926514 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 9.5 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 7.59999990463257 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 7.80000019073486 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.39999961853027 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.5 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.69999980926514 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.89999961853027 --- S0000067 // YAR009C SGDID:S0000067, Chr I from 164188-160598, reverse complement, Ty ORF // sgd // 11 // --- /// S0002147 // YBL005W-B SGDID:S0002147, Chr II from 221333-222637,222639-226601, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0002155 // YBR012W-B SGDID:S0002155, Chr II from 259867-261171,261173-265138, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0000940 // YER138C SGDID:S0000940, Chr V from 449020-447719,447717-443752, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007406 // YGR027W-B SGDID:S0007406, Chr VII from 536061-537365,537367-541329, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007368 // YGR161C-D SGDID:S0007368, Chr VII from 823020-821716,821714-817752, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0003788 // YJR027W SGDID:S0003788, Chr X from 472674-473975,473977-477942, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0003790 // YJR029W SGDID:S0003790, Chr X from 478258-479558,479560-483526, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007374 // YLR157C-B SGDID:S0007374, Chr XII from 481602-480298,480296-476334, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0004503 // YML039W SGDID:S0004503, Chr XIII from 196628-197932,197934-201896, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0004648 // YMR045C SGDID:S0004648, Chr XIII from 362626-361322,361320-357358, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007387 // YNL284C-B SGDID:S0007387, Chr XIV from 102230-100926,100924-96962, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007350 // YOL103W-B SGDID:S0007350, Chr XV from 117999-119303,119305-123267, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007352 // YOR142W-B SGDID:S0007352, Chr XV from 595112-596416,596418-600380, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007358 // YPL257W-B SGDID:S0007358, Chr XVI from 56748-58052,58054-62016, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// GENEFINDER00000018229 // cdna:GeneFinder chromosome:SGD1:I:160598:164056:-1 // ensembl // 11 // --- /// GENSCAN00000020384 // cdna:Genscan chromosome:SGD1:I:160598:164119:-1 // ensembl // 11 // --- /// GENSCAN00000021135 // cdna:Genscan chromosome:SGD1:II:223134:226601:1 // ensembl // 11 // --- /// GENEFINDER00000022184 // cdna:GeneFinder chromosome:SGD1:II:223134:226601:1 // ensembl // 11 // --- /// GENSCAN00000021149 // cdna:Genscan chromosome:SGD1:II:261668:265138:1 // ensembl // 11 // --- /// GENEFINDER00000022155 // cdna:GeneFinder chromosome:SGD1:II:261668:265138:1 // ensembl // 11 // --- /// GENSCAN00000016916 // cdna:Genscan chromosome:SGD1:V:443752:447219:-1 // ensembl // 11 // --- /// GENEFINDER00000019722 // cdna:GeneFinder chromosome:SGD1:V:443752:447219:-1 // ensembl // 11 // --- /// GENSCAN00000019361 // cdna:Genscan chromosome:SGD1:VII:537862:541329:1 // ensembl // 11 // --- /// GENEFINDER00000021411 // cdna:GeneFinder chromosome:SGD1:VII:537862:541329:1 // ensembl // 11 // --- /// GENSCAN00000019466 // cdna:Genscan chromosome:SGD1:VII:817752:821219:-1 // ensembl // 11 // --- /// GENEFINDER00000021746 // cdna:GeneFinder chromosome:SGD1:VII:817752:820817:-1 // ensembl // 11 // --- /// GENSCAN00000024153 // cdna:Genscan chromosome:SGD1:X:474475:477942:1 // ensembl // 11 // --- /// GENEFINDER00000024453 // cdna:GeneFinder chromosome:SGD1:X:474475:477942:1 // ensembl // 11 // --- /// GENSCAN00000024155 // cdna:Genscan chromosome:SGD1:X:480059:483526:1 // ensembl // 11 // --- /// GENEFINDER00000024293 // cdna:GeneFinder chromosome:SGD1:X:480059:483526:1 // ensembl // 11 // --- /// GENSCAN00000017944 // cdna:Genscan chromosome:SGD1:XII:476334:479801:-1 // ensembl // 11 // --- /// GENEFINDER00000024553 // cdna:GeneFinder chromosome:SGD1:XII:476334:479801:-1 // ensembl // 11 // --- /// GENSCAN00000018685 // cdna:Genscan chromosome:SGD1:XIII:198429:201896:1 // ensembl // 11 // --- /// GENEFINDER00000021874 // cdna:GeneFinder chromosome:SGD1:XIII:198429:201896:1 // ensembl // 11 // --- /// GENSCAN00000018752 // cdna:Genscan chromosome:SGD1:XIII:357358:360825:-1 // ensembl // 11 // --- /// GENEFINDER00000021925 // cdna:GeneFinder chromosome:SGD1:XIII:357358:360423:-1 // ensembl // 11 // --- /// GENSCAN00000019813 // cdna:Genscan chromosome:SGD1:XIV:96962:100429:-1 // ensembl // 11 // --- /// GENEFINDER00000020607 // cdna:GeneFinder chromosome:SGD1:XIV:96962:100429:-1 // ensembl // 11 // --- /// GENSCAN00000017383 // cdna:Genscan chromosome:SGD1:XV:119800:123267:1 // ensembl // 11 // --- /// GENEFINDER00000022669 // cdna:GeneFinder chromosome:SGD1:XV:119800:123267:1 // ensembl // 11 // --- /// GENSCAN00000017569 // cdna:Genscan chromosome:SGD1:XV:596913:600380:1 // ensembl // 11 // --- /// GENEFINDER00000022561 // cdna:GeneFinder chromosome:SGD1:XV:597315:600380:1 // ensembl // 11 // --- /// GENSCAN00000016988 // cdna:Genscan chromosome:SGD1:XVI:58549:62016:1 // ensembl // 11 // --- /// GENEFINDER00000020850 // cdna:GeneFinder chromosome:SGD1:XVI:58549:62016:1 // ensembl // 11 // --- /// YAR009C // cdna:known chromosome:SGD1:I:160598:164188:-1 gene:YAR009C // ensembl // 11 // --- /// YBL005W-B // cdna:known chromosome:SGD1:II:221333:226601:1 gene:YBL005W-B // ensembl // 11 // --- /// YBR012W-B // cdna:known chromosome:SGD1:II:259867:265138:1 gene:YBR012W-B // ensembl // 11 // --- /// YER138C // cdna:known chromosome:SGD1:V:443752:449020:-1 gene:YER138C // ensembl // 11 // --- /// YGR027W-B // cdna:known chromosome:SGD1:VII:536061:541329:1 gene:YGR027W-B // ensembl // 11 // --- /// YGR161C-D // cdna:known chromosome:SGD1:VII:817752:823020:-1 gene:YGR161C-D // ensembl // 11 // --- /// YJR027W // cdna:known chromosome:SGD1:X:472674:477942:1 gene:YJR027W // ensembl // 11 // --- /// YJR029W // cdna:known chromosome:SGD1:X:478258:483526:1 gene:YJR029W // ensembl // 11 // --- /// YLR157C-B // cdna:known chromosome:SGD1:XII:476334:481602:-1 gene:YLR157C-B // ensembl // 11 // --- /// YML039W // cdna:known chromosome:SGD1:XIII:196628:201896:1 gene:YML039W // ensembl // 11 // --- /// YMR045C // cdna:known chromosome:SGD1:XIII:357358:362626:-1 gene:YMR045C // ensembl // 11 // --- /// YNL284C-B // cdna:known chromosome:SGD1:XIV:96962:102230:-1 gene:YNL284C-B // ensembl // 11 // --- /// YOL103W-B // cdna:known chromosome:SGD1:XV:117999:123267:1 gene:YOL103W-B // ensembl // 11 // --- /// YOR142W-B // cdna:known chromosome:SGD1:XV:595112:600380:1 gene:YOR142W-B // ensembl // 11 // --- /// YPL257W-B // cdna:known chromosome:SGD1:XVI:56748:62016:1 gene:YPL257W-B // ensembl // 11 // --- --- No cerevisiae_gene -1.18548503216649 -3.08295393540695 -1.44495438988654 -1.77844400831486 -1.01558679381863 Max fold change at or above threshold 4 3.08295393540695 Max fold change at or above threshold 0.85101426831878 -1.18665278801966 -0.46908860940913 0.804727129110007 22.7703003883362 10.5178915234966 0.46191272596844 PPMPPP Called_P_>2EXP 1 0 PMPP 0 3 1 Yes Yes 2 < x = 3
1773773_at SPAC9.08c.S1 --- 3.08255071987113 --- --- --- --- 4.19870662689209 12.9427261352539 4.31530475616455 4.20012712478638 0.0239257998764515 0.030273400247097 0.00805663969367743 0.0107421996071935 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9.08c /DEF=steroid reductase (predicted) --- --- --- --- --- --- SPAC9.08c // |||steroid reductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.69260059195991 3.08255071987113 1.20866836730406 1.02777001101379 1.00033831796801 Max fold change at or above threshold 4 3.08255071987113 Max fold change at or above threshold PPPAPP No 4 0 PPPP 0 4 0 No No 3 < x
1773723_at SPAC6F6.08c.S1 --- 3.0815252751424 --- --- --- --- 2.44711828231812 3.40268468856812 7.54085683822632 1.12255322933197 0.567627012729645 0.850341975688934 0.366210997104645 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F6.08c /GEN=cdc16 /DEF=two-component GAP for GTPase spg1 --- --- --- --- --- --- SPAC6F6.08c // |cdc16|bub2|two-component GAP for GTPase spg1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.24581556465025 1.39048639910647 1.40566095457522 3.0815252751424 -2.17995745624855 Max fold change at or above threshold 2 3.0815252751424 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774649_at YMR126C.S1 Protein of unknown function, deletion causes sensitivity to thermal stress 3.08136212713916 206.110450744629 536.888031005859 --- --- --- --- 507.096496582031 213.316680908203 198.904220581055 566.679565429688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR126C /GEN=STO1 /DB_XREF=GI:6323774 /SEG=NC_001145:-520760,521788 /DEF=Protein of unknown function, deletion causes sensitivity to thermal stress /NOTE=Ymr126cp --- --- --- --- --- S0004733 // span:10-32,45-67 // numtm:2 S0004733 // DLT1 SGDID:S0004733, Chr XIII from 521788-520760, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018820 // cdna:Genscan chromosome:SGD1:XIII:520760:521476:-1 // ensembl // 11 // --- /// YMR126C // cdna:known chromosome:SGD1:XIII:520760:521788:-1 gene:YMR126C // ensembl // 11 // --- --- No cerevisiae_gene -3.08136212713916 -2.37720038781332 -1.17938072592593 -2.54945066072837 1.11749848253589 Max fold change at or above threshold 4 3.08136212713916 Max fold change at or above threshold 0.704008841998904 -0.821269724717922 -0.896097931619185 1.0133588143382 371.499240875244 192.607319137901 0.518459522781587 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769450_at YER035W.S1 RNA-binding protein, activates mRNA decapping directly by binding to the mRNA substrate and enhancing the activity of the decapping proteins Dcp1p and Dcp2p 3.08122233971093 6279.79858398438 2272.24780273438 EDC2 290 // deadenylylation-dependent decapping // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3723 // RNA binding // traceable author statement 2278.86474609375 7021.68896484375 5537.908203125 2265.630859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER035W /GEN=EDC2 /DB_XREF=GI:6320873 /SEG=NC_001137:+222638,223075 /DEF=RNA-binding protein, activates mRNA decapping directly by binding to the mRNA substrate and enhancing the activity of the decapping proteins Dcp1p and Dcp2p /NOTE=Edc2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: RNA binding [goid GO:0003723] [evidence TAS] [pmid 12554866]; go_process: deadenylation-dependent decapping [goid GO:0000290] [evidence IGI] [pmid 11139489] --- --- --- --- --- --- S0000837 // EDC2 SGDID:S0000837, Chr V from 222638-223075, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019629 // cdna:GeneFinder chromosome:SGD1:V:222638:223075:1 // ensembl // 11 // --- /// YER035W // cdna:known chromosome:SGD1:V:222638:223075:1 gene:YER035W // ensembl // 11 // --- --- No cerevisiae_gene 1.41980388312694 3.08122233971093 1.00592175251735 2.43011710660654 -1.00584114868668 Max fold change at or above threshold 4 3.08122233971093 Max fold change at or above threshold -0.835020966349784 1.14797525900732 0.527599821496114 -0.840554114153647 4276.02319335938 2391.74646835039 0.559338983957044 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779657_at SPAC23C11.01.S1 --- 3.0805584455476 --- --- --- --- 2.59434509277344 5.12549257278442 3.56064796447754 0.994439482688904 0.49169921875 0.194580003619194 0.533936023712158 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C11.01 /DEF=hypothetical protein --- --- --- --- --- --- SPAC23C11.01 // |||ER membrane protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.15940850462395 1.97564024426107 -3.0805584455476 1.37246504884633 -2.60885165757748 Max fold change at or above threshold 3 3.0805584455476 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770695_at YCR083W.S1 Mitochondrial thioredoxin, highly conserved oxidoreductase required to maintain the redox homeostasis of the cell, forms the mitochondrial thioredoxin system with Trr2p, redox state is maintained by both Trr2p and Glr1p 3.08047227933525 1682.69201660156 2519.39672851563 TRX3 6979 // response to oxidative stress // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 30508 // thiol-disulfide exchange intermediate activity // inferred from direct assay 2643.94750976563 1765.81774902344 1599.56628417969 2394.84594726563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR083W /GEN=TRX3 /DB_XREF=GI:6319925 /SEG=NC_001135:+259574,259957 /DEF=mitochondrial thioredoxin /NOTE=Trx3p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 10037727]; go_function: thiol-disulfide exchange intermediate activity [goid GO:0030508] [evidence IDA] [pmid 10037727]; go_process: response to oxidative stress [goid GO:0006979] [evidence IMP] [pmid 10037727] --- --- --- --- --- --- S0000679 // TRX3 SGDID:S0000679, Chr III from 259574-259957, Verified ORF // sgd // 11 // --- /// GENSCAN00000022517 // cdna:Genscan chromosome:SGD1:III:259601:259957:1 // ensembl // 10 // --- /// GENEFINDER00000023345 // cdna:GeneFinder chromosome:SGD1:III:259601:259957:1 // ensembl // 10 // --- /// YCR083W // cdna:known chromosome:SGD1:III:259574:259957:1 gene:YCR083W // ensembl // 11 // --- --- No cerevisiae_gene -3.08047227933525 -1.4972935407563 1.37859778686377 -1.65291525328788 -1.10401569369605 Max fold change at or above threshold 4 3.08047227933525 Max fold change at or above threshold 1.08950207338104 -0.672735293579267 -1.00636997578378 0.589603195982008 2101.04437255859 498.303904573809 0.23716962434591 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769675_at YDL177C.S1 Hypothetical protein 3.08030540453556 75.439811706543 223.396903991699 --- --- --- --- 197.081146240234 63.9810409545898 86.8985824584961 249.712661743164 0.000244141003349796 0.00122069998178631 0.00292969006113708 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL177C /GEN=DLD2 /DB_XREF=GI:6320024 /SEG=NC_001136:-141210,141722 /DEF=Hypothetical ORF /NOTE=Ydl177cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002336 // YDL177C SGDID:S0002336, Chr IV from 141722-141210, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023572 // cdna:GeneFinder chromosome:SGD1:IV:141210:141722:-1 // ensembl // 11 // --- /// YDL177C // cdna:known chromosome:SGD1:IV:141210:141722:-1 gene:YDL177C // ensembl // 11 // --- --- No cerevisiae_gene -1.22175014184168 -3.08030540453556 1.51192676319361 -2.26794431697851 1.26705505070878 Max fold change at or above threshold 4 3.08030540453556 Max fold change at or above threshold 0.538079646991036 -0.964527734660236 -0.705804670849233 1.13225275851843 149.418357849121 88.579429936898 0.592828292399942 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
RPTR-Sc-AF292560-1_s_at AFFX-Sc-AF292560-1 --- 3.07900427980674 --- --- --- --- 0.506662011146545 0.841903328895569 0.28849196434021 0.232910051941872 0.884033203125 0.696289002895355 0.953857004642487 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL AF292560 /FEA=CDS_1 /DB_XREF=AAG34048.1 GI:11321082 /PROD=cyan fluorescent protein cfp /GEN=cfp --- --- --- --- --- --- AFFX-Sc-AF292560-1 // --- // affx // --- // --- --- No No -2.49058250083211 1.66166657529818 -3.07900427980674 -1.75624306314839 -2.17535485017622 Max fold change at or above threshold 0 3.07900427980674 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770046_at SPAC11E3.14.S1 --- 3.07897250849798 --- --- --- --- 2.23563528060913 4.93732213973999 5.91091966629028 0.856640636920929 0.432372987270355 0.5 0.366210997104645 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11E3.14 /DEF=conserved fungal protein --- --- --- --- --- --- D89214 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1192. // gb // 9 // --- /// SPAC11E3.14 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.88439739471345 2.20846494173895 3.07897250849798 2.64395526298895 -2.60977028669198 Max fold change at or above threshold 2 3.07897250849798 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773802_at SPAC1687.01.S1 --- 3.07835781888988 --- --- --- --- 1.22688603401184 0.681920051574707 0.496266007423401 0.403049856424332 0.870360970497131 0.953857004642487 0.985840022563934 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.01 /GEN=rpc19 /DEF=DNA-directed RNA polymerase (I and III subunit) (PMID 10079952) --- --- --- --- --- --- U50769 // Schizosaccharomyces pombe DNA-directed RNA polymerase I and III 16 kDa polypeptide mRNA, complete cds. // gb // 10 // --- /// AB013499 // Schizosaccharomyces pombe mRNA for RPA17, complete cds. // gb // 11 // --- /// AF079779 // Schizosaccharomyces pombe nuclear RNA polymerases I and III common subunit Rpc19 (rpc19+) mRNA, complete cds. // gb // 11 // --- /// SPAC1687.01 // |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymerase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.07835781888988 -1.79916403862694 -2.04522079411719 -2.47223467990846 -3.04400563467804 Max fold change at or above threshold 0 3.07835781888988 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776415_at SPBC1861.08c.S1 --- 3.07707696493017 --- --- --- --- 8.21151351928711 6.04398345947266 6.55243730545044 2.66860842704773 0.0676269978284836 0.0952147990465164 0.00805663969367743 0.303710997104645 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1861.08c /DEF=U2 snRNP complex --- --- --- --- --- --- SPBC1861.08c // |||U2 snRNP complex|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.16445289684619 -1.35862607406996 -2.09840775098139 -1.2531998608299 -3.07707696493017 Max fold change at or above threshold 4 3.07707696493017 Max fold change at or above threshold AMAAPA No 4 0 AAPA 3 1 0 No No x = 1
1771354_at SPAC4A8.08c.S1 --- 3.07392596389182 --- --- --- --- 0.416280061006546 0.707876682281494 0.632367730140686 0.135422930121422 0.870360970497131 0.828612983226776 0.850341975688934 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4A8.08c /DEF=valine-tRNA ligase (predicted) --- --- --- --- --- --- SPAC4A8.08c // |vas1||valine-tRNA ligase Vas1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.26588946868068 1.70048183564181 1.11670197703458 1.51909204733864 -3.07392596389182 Max fold change at or above threshold 0 3.07392596389182 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773904_at YLR099W-A.S1 Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 3.07347413150453 1603.21929931641 597.159912109375 --- --- --- --- 554.77978515625 1705.10131835938 1501.33728027344 639.5400390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR099W-A /GEN=ICT1 /DB_XREF=GI:13129179 /SEG=NC_001144:+341326,341589 /DEF=Hypothetical ORF identified by homology. See FEBS Letters [2000] 487:31-36. /NOTE=Ylr099w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007618 // YLR099W-A SGDID:S0007618, Chr XII from 341326-341589, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017897 // cdna:Genscan chromosome:SGD1:XII:341326:341589:1 // ensembl // 11 // --- /// GENEFINDER00000024655 // cdna:GeneFinder chromosome:SGD1:XII:341326:341589:1 // ensembl // 11 // --- /// YLR099W-A // cdna:known chromosome:SGD1:XII:341326:341589:1 gene:YLR099W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.07354344576578 3.07347413150453 1.09028636520861 2.70618598666243 1.15278179950695 Max fold change at or above threshold 4 3.07347413150453 Max fold change at or above threshold -0.927891827384258 1.02912087992995 0.682462315069878 -0.783691367615572 1100.18960571289 587.79461620452 0.534266651086606 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777788_at SPBC25B2.03.S1 --- 3.07322910150891 --- --- --- --- 10.9137439727783 10.4611167907715 15.747784614563 3.55123019218445 0.0676269978284836 0.000732421991415322 0.00292969006113708 0.0561522990465164 A P P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25B2.03 /DEF=glutaredoxin (inferred from context) --- --- --- --- --- --- SPBC25B2.03 // |||glutaredoxin |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.98067250743365 -1.04326757755024 -1.36573594081929 1.44293146823327 -3.07322910150891 Max fold change at or above threshold 4 3.07322910150891 Max fold change at or above threshold APPPPM No 2 0 APPM 1 2 1 No No 1 < x = 2
1773334_at SPBP35G2.04c.S1 --- 3.0730390108484 --- --- --- --- 1.28803431987762 3.95817971229553 3.64336156845093 3.0433554649353 0.567627012729645 0.274170011281967 0.432372987270355 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP35G2.04c /DEF=sequence orphan --- --- --- --- --- --- SPBP35G2.04c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.77062514543792 3.0730390108484 2.89223202803565 2.82862149884103 2.36279066323671 Max fold change at or above threshold 3 3.0730390108484 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774907_at SPBC25H2.08c.S1 --- 3.07273607683273 --- --- --- --- 3.41508293151855 10.4936485290527 10.1642799377441 6.07863998413086 0.334473013877869 0.0375977009534836 0.030273400247097 0.014160200022161 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25H2.08c /DEF=metal ion transporter activity (ISS) --- --- --- --- --- --- SPBC25H2.08c // |mrs2||magnesium ion transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.01352578935228 3.07273607683273 -2.05140317482868 2.97629080803156 1.77993920089897 Max fold change at or above threshold 4 3.07273607683273 Max fold change at or above threshold APPAPP No 4 0 APPP 1 3 0 No No 2 < x = 3
1769816_at SPBPJ4664.05.S1 --- 3.07228270152996 --- --- --- --- 13.4392166137695 18.6174297332764 21.0613613128662 12.426308631897 0.171387001872063 0.030273400247097 0.0676269978284836 0.0461426004767418 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPJ4664.05 /DEF=conserved yeast protein --- --- --- --- --- --- SPBPJ4664.05 // |||conserved yeast protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.07228270152996 1.38530617284651 -2.51861656638043 1.56715691979302 -1.08151318399356 Max fold change at or above threshold 4 3.07228270152996 Max fold change at or above threshold AAPMAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1775101_at YHL019C.S1 Protein of unknown function, homologous to the medium chain of mammalian clathrin-associated protein complex; involved in vesicular transport 3.07220183572128 407.557632446289 621.278656005859 APM2 16192 // vesicle-mediated transport // inferred from sequence similarity /// 16192 // vesicle-mediated transport // traceable author statement 30121 // AP-1 adaptor complex // inferred from physical interaction 30276 // clathrin binding // inferred from sequence similarity 620.907104492188 383.88671875 431.228546142578 621.650207519531 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL019C /GEN=APM2 /DB_XREF=GI:6321768 /SEG=NC_001140:-67727,69544 /DEF=homologous to the medium chain of mammalian clathrin-associated protein complex /NOTE=Apm2p; go_component: AP-1 adaptor complex [goid GO:0030121] [evidence IPI] [pmid 10564262]; go_function: clathrin binding [goid GO:0030276] [evidence ISS] [pmid 10564262]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence ISS] [pmid 10564262] --- --- --- --- --- --- S0001011 // APM2 SGDID:S0001011, Chr VIII from 69544-67727, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016538 // cdna:Genscan chromosome:SGD1:VIII:67727:68938:-1 // ensembl // 11 // --- /// GENEFINDER00000020313 // cdna:GeneFinder chromosome:SGD1:VIII:67727:68620:-1 // ensembl // 11 // --- /// YHL019C // cdna:known chromosome:SGD1:VIII:67727:69544:-1 gene:YHL019C // ensembl // 11 // --- YHL019W-A // ensembl // 11 // Negative Strand Matching Probes No cerevisiae_gene -3.07220183572128 -1.61742272958535 1.1510362489042 -1.4398562202023 1.00119680226232 Max fold change at or above threshold 4 3.07220183572128 Max fold change at or above threshold 0.852616108317866 -1.04511487129253 -0.666067085200461 0.858565848175122 514.418144226074 124.896725768185 0.242792224905068 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772035_at YJR022W.S1 Component of small nuclear ribonucleoprotein complexes involved in RNA processing and splicing 3.07150586174827 106.489814758301 270.486892700195 LSM8 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction /// 398 // nuclear mRNA splicing, via spliceosome // traceable author statement /// 6364 // rRNA processing // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5688 // snRNP U6 // traceable author statement /// 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 3723 // RNA binding // traceable author statement 276.163696289063 123.068130493164 89.9114990234375 264.810089111328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR022W /GEN=LSM8 /DB_XREF=GI:37362670 /SEG=NC_001142:+469698,470027 /DEF=Like Sm-B protein /NOTE=Lsm8p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12730603]; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence IDA] [pmid 10377396]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10377396]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 12438310] --- --- --- --- --- --- S0003783 // LSM8 SGDID:S0003783, Chr X from 469698-470027, Verified ORF // sgd // 11 // --- /// YJR022W // cdna:known chromosome:SGD1:X:469698:470027:1 gene:YJR022W // ensembl // 11 // --- YJR023C // ensembl // 10 // Negative Strand Matching Probes No cerevisiae_gene -1.04230960608155 -2.24399034244209 1.31815188126593 -3.07150586174827 -1.04287452647985 Max fold change at or above threshold 4 3.07150586174827 Max fold change at or above threshold 0.915586365413086 -0.683177991307818 -1.02942995691602 0.79702158281075 188.488353729248 95.7586808539442 0.50803500035602 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776622_at SPAC1002.15c.S1 --- 3.07146543639654 --- --- --- --- 2.0150408744812 6.18912839889526 2.48563122749329 1.79286468029022 0.805419981479645 0.219482004642487 0.805419981479645 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1002.15c /GEN=pmc5 /DEF=RNA polymerase II holoenzyme component (PMID 10625684) --- --- --- --- --- --- SPAC1002.15c // |pmc5|med6|mediator complex subunit |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.17096347785426 3.07146543639654 -1.77585902043289 1.23353886215 -1.1239224558515 Max fold change at or above threshold 1 3.07146543639654 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769550_at YHR197W.S1 Essential protein involved in the processing of the ITS2 region of the rRNA locus; required for the maturation and nuclear export of the 60S ribosomal subunit 3.07078862639991 157.397857666016 444.972595214844 RIX1 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 54 // ribosome-nucleus export // inferred from physical interaction /// 54 // ribosome-nucleus export // traceable author statement /// 54 // ribosome-nucleus export // inferred from mutant phenotype /// 6365 // 35S primary transcript processing // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5654 // nucleoplasm // inferred from direct assay --- 407.895904541016 132.830993652344 181.964721679688 482.049285888672 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR197W /GEN=RIX1 /DB_XREF=GI:6321991 /SEG=NC_001140:+493894,496185 /DEF=RIbosome eXport /NOTE=Rix1p; go_component: nucleoplasm [goid GO:0005654] [evidence IDA] [pmid 12374754]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ribosome-nucleus export [goid GO:0000054] [evidence IMP] [pmid 11313466]; go_process: ribosome-nucleus export [goid GO:0000054] [evidence IPI,TAS] [pmid 12374754] --- --- --- --- --- --- S0001240 // RIX1 SGDID:S0001240, Chr VIII from 493895-496186, Verified ORF // sgd // 11 // --- /// GENSCAN00000016719 // cdna:Genscan chromosome:SGD1:VIII:493895:496186:1 // ensembl // 11 // --- /// GENEFINDER00000020108 // cdna:GeneFinder chromosome:SGD1:VIII:493895:496186:1 // ensembl // 11 // --- /// YHR197W // cdna:known chromosome:SGD1:VIII:493895:496186:1 gene:YHR197W // ensembl // 11 // --- --- No cerevisiae_gene 2.47153580674091 -3.07078862639991 -1.03301123511619 -2.24162079756885 1.18179486609726 Max fold change at or above threshold 4 3.07078862639991 Max fold change at or above threshold 0.627870468418404 -0.990572385841639 -0.701476511082116 1.06417842850535 301.18522644043 169.956517256479 0.564292343502758 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774248_at SPBC2D10.18.S1 --- 3.06703724061239 --- --- --- --- 2.61516118049622 0.852666914463043 1.14028167724609 3.09692525863647 0.366210997104645 0.985840022563934 0.828612983226776 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2D10.18 /GEN=abc1 /DEF=ABC1 family --- --- --- --- --- --- X91616 // S.pombe mRNA for abc1Sp protein. // gb // 11 // --- /// SPBC2D10.18 // |abc1|coq8|ABC1 family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.25178256186085 -3.06703724061239 1.5510779183211 -2.2934343615975 1.1842196502966 Max fold change at or above threshold 2 3.06703724061239 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-PheX-M_at AFFX-PheX-M --- 3.06494150399847 --- --- --- --- 0.277942210435867 0.851876616477966 0.559638202190399 0.774608552455902 0.990662574768066 0.824671745300293 0.945786654949188 0.84326845407486 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2437-2828 of gb:M24537.1 /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. --- --- --- --- --- --- AFFX-PheX-M // --- // unknown // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-PheX-M // --- // unknown // --- // --- /// AFFX-PheX-M // --- // unknown // --- // --- /// AFFX-PheX-M // --- // gb // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// M24537 // M24537 B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// M24537 // M24537 B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// M24537 // M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-PheX-M // B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2437-2828 of gb:M24537.1 /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. // affx // --- // --- /// M24537 // Bacillus subtilis /REF=M24537 /DEF=B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 /LEN=1409 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-PheX-M // --- // unknown // --- // --- /// AFFX-PheX-M // B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2437-2828 of gb:M24537.1 /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. // affx // --- // --- /// M24537 // M24537 B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-PheX-M // --- // unknown // --- // --- /// AFFX-PheX-M // --- // affx // --- // --- /// AFFX-PheX-M // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-PheX-M // --- // affx // --- // --- /// AFFX-PheX-M // --- // affx // --- // --- /// AFFX-PheX-M // --- // affx // --- // --- /// AFFX-PheX-M // --- // affx // --- // --- /// AFFX-PheX-M // --- // affx // --- // --- /// AFFX-PheX-M // --- // affx // --- // --- /// AFFX-PheX-M // --- // affx // --- // --- /// AFFX-PheX-M // --- // affx // --- // --- /// AFFX-PheX-M // --- // affx // --- // --- /// AFFX-PheX-M // --- // affx // --- // --- /// AFFX-PheX-M // --- // affx // --- // --- AK101966 // gb // 1 // Cross Hyb Matching Probes /// 50812173 // gb // 20 // Negative Strand Matching Probes AFFX_control No 2.27837510975808 3.06494150399847 2.09993295227753 2.0135056179944 2.78694103799911 Max fold change at or above threshold 0 3.06494150399847 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769706_at SPBC83.06c.S1 --- 3.0647074643018 --- --- --- --- 5.07397556304932 11.6096506118774 6.33705425262451 1.65561497211456 0.274170011281967 0.0461426004767418 0.149657994508743 0.0805663987994194 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC83.06c /DEF=mitochondrial ribosomal protein subunit L36 --- --- --- --- --- --- SPBC83.06c // |||mitochondrial ribosomal protein subunit L36|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.25003901289138 2.28807775433991 1.11595280774235 1.24893274984874 -3.0647074643018 Max fold change at or above threshold 3 3.0647074643018 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1769668_at SPAC17A2.10c.S1 --- 3.06466865012106 --- --- --- --- 6.22591114044189 19.0803546905518 15.8776798248291 16.573205947876 0.067138671875 0.00805663969367743 0.00585938012227416 0.000244141003349796 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A2.10c /DEF=dubious --- --- --- --- --- --- SPAC17A2.10c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.13410086777495 3.06466865012106 2.37980246436269 2.55025802114197 2.6619727737874 Max fold change at or above threshold 4 3.06466865012106 Max fold change at or above threshold AAPPPP No 3 0 APPP 1 3 0 No No 2 < x = 3
1771201_at SPBC106.03.S1 --- 3.06444684091485 --- --- --- --- 7.55951547622681 2.46684503555298 5.148841381073 7.9854097366333 0.432372987270355 0.753906011581421 0.432372987270355 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC106.03 /DEF=hypothetical protein --- --- --- --- --- --- SPBC106.03 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.87064703210086 -3.06444684091485 1.17513099512138 -1.468197389808 1.05633883041127 Max fold change at or above threshold 3 3.06444684091485 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774357_at YJR126C.S1 Protein of unknown function involved in vacuolar protein sorting 3.06367400277255 699.818542480469 1480.98809814453 VPS70 6623 // protein-vacuolar targeting // inferred from mutant phenotype --- --- 1464.54846191406 664.865234375 734.771850585938 1497.427734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR126C /GEN=VPS70 /DB_XREF=GI:6322586 /SEG=NC_001142:-656169,658604 /DEF=Vps70p /NOTE=go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 12134085] --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 7.59999990463257 S0003887 // span:90-109 // numtm:1 S0003887 // VPS70 SGDID:S0003887, Chr X from 658604-656169, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024232 // cdna:Genscan chromosome:SGD1:X:656169:658532:-1 // ensembl // 11 // --- /// GENEFINDER00000024322 // cdna:GeneFinder chromosome:SGD1:X:656169:658532:-1 // ensembl // 11 // --- /// YJR126C // cdna:known chromosome:SGD1:X:656169:658604:-1 gene:YJR126C // ensembl // 11 // --- --- No cerevisiae_gene -3.06367400277255 -2.20277491767305 -1.03201606622475 -1.99320164585262 1.02245010890112 Max fold change at or above threshold 4 3.06367400277255 Max fold change at or above threshold 0.827553673529648 -0.941227259391687 -0.786604171672974 0.900277757535013 1090.4033203125 452.109819059559 0.414626231081164 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770580_at YCR010C.S1 Acetate transporter required for normal sporulation 3.06340705947666 2489.17358398438 917.396514892578 ADY2 6259 // DNA metabolism // inferred from genetic interaction /// 6810 // transport // inferred from mutant phenotype /// 6846 // acetate transport // inferred from mutant phenotype /// 7126 // meiosis // inferred from expression pattern /// 19740 // nitrogen utilization // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 16020 // membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity /// 15123 // acetate transporter activity // inferred from mutant phenotype 827.634094238281 2442.96704101563 2535.38012695313 1007.15893554688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR010C /GEN=ADY2 /DB_XREF=GI:6319855 /SEG=NC_001135:-132270,133121 /DEF=Accumulation of DYads; member of the TC 9.B.33 YaaH family of putative transporters /NOTE=Ady2p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 12429834]; go_function: acetate transporter activity [goid GO:0015123] [evidence IMP] [pmid 14968426]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 12429834]; go_process: DNA metabolism [goid GO:0006259] [evidence IGI] [pmid 10051619]; go_process: acetate transport [goid GO:0006846] [evidence IMP] [pmid 14968426]; go_process: meiosis [goid GO:0007126] [evidence IEP] [pmid 10051619]; go_process: nitrogen utilization [goid GO:0019740] [evidence IMP] [pmid 12429834]; go_process: transport [goid GO:0006810] [evidence IMP] [pmid 12429834] --- --- --- --- --- S0000603 // span:117-139,151-173,186-203,210-232,242-261 // numtm:5 S0000603 // ADY2 SGDID:S0000603, Chr III from 133121-132270, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022468 // cdna:Genscan chromosome:SGD1:III:132270:133121:-1 // ensembl // 11 // --- /// GENEFINDER00000023387 // cdna:GeneFinder chromosome:SGD1:III:132270:133121:-1 // ensembl // 11 // --- /// YCR010C // cdna:known chromosome:SGD1:III:132270:133121:-1 gene:YCR010C // ensembl // 11 // --- --- No cerevisiae_gene 1.13796253188709 2.9517477083445 1.74555302793364 3.06340705947666 1.21691329847137 Max fold change at or above threshold 4 3.06340705947666 Max fold change at or above threshold -0.960984341887176 0.811765016254736 0.913183884176953 -0.763964558544513 1703.28504943848 911.202105000583 0.534967476700967 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777103_at SPAC13A11.05.S1 --- 3.06275313747343 --- --- --- --- 9.55347537994385 13.9862222671509 11.6389017105103 3.11924433708191 0.014160200022161 0.0561522990465164 0.018554700538516 0.029052734375 P M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13A11.05 /DEF=cytosol aminopeptidase --- --- --- --- --- --- SPAC13A11.05 // |||peptidase family M17|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.14892791486032 1.46399312406383 -1.62582788228329 1.21828981052743 -3.06275313747343 Max fold change at or above threshold 4 3.06275313747343 Max fold change at or above threshold PPMAPP No 4 0 PMPP 0 3 1 No No 2 < x = 3
1771699_at SPBC16C6.06.S1 --- 3.06022430267582 --- --- --- --- 0.604372382164001 0.724119007587433 1.04700148105621 0.537799715995789 0.888427972793579 0.932372987270355 0.888427972793579 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16C6.06 /GEN=pep1 /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPBC16C6.06 // |pep1|vps10|glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.06022430267582 1.19813384753729 -1.723865144348 1.73237810322726 -1.12378709803695 Max fold change at or above threshold 0 3.06022430267582 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776566_at SPBC19G7.03c.S1 --- 3.06006716498504 --- --- --- --- 8.85659694671631 10.9855442047119 5.73936939239502 7.34450101852417 0.194580003619194 0.5 0.432372987270355 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19G7.03c /GEN=rps3002 /DEF=40S ribosomal protein S30 --- --- --- --- --- --- SPBC19G7.03c // |rps3002|rps30-2, rps30|40S ribosomal protein S30|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.12242359855908 1.24037982882183 -3.06006716498504 -1.54313067189085 -1.20588136952781 Max fold change at or above threshold 4 3.06006716498504 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771600_at SPBC12C2.04.S1 --- 3.05923878068997 --- --- --- --- 6.94659948348999 21.1120681762695 21.2513065338135 16.4167385101318 0.129638999700546 0.0805663987994194 0.0239257998764515 0.0107421996071935 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12C2.04 /DEF=dehydrogenase (predicted) --- --- --- --- --- --- SPBC12C2.04 // |||dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.12930836778366 3.03919467740247 2.24352084952885 3.05923878068997 2.36327696006507 Max fold change at or above threshold 4 3.05923878068997 Max fold change at or above threshold APAPPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1769493_at SPAC19B12.05c.S1 --- 3.05909284694922 --- --- --- --- 0.941614210605621 2.86717343330383 2.88048529624939 2.44944262504578 0.753906011581421 0.533936023712158 0.219482004642487 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19B12.05c /GEN=fcp1 /DEF=CTD phosphatase (PMID 11839823) --- --- --- --- --- --- SPAC19B12.05c // |fcp1||CTD phosphatase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.81690965088828 3.04495556780068 -1.15892688636077 3.05909284694922 2.60132291702603 Max fold change at or above threshold 2 3.05909284694922 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771558_at SPCC962.05.S1 --- 3.05856724972962 --- --- --- --- 0.907725751399994 0.365552872419357 0.315835207700729 0.296781361103058 0.665526986122131 0.888427972793579 0.870360970497131 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC962.05 /DEF=sequence orphan --- --- --- --- --- --- SPCC962.05 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.36693725618191 -2.48315857947537 -1.06321455260559 -2.87404864710369 -3.05856724972962 Max fold change at or above threshold 0 3.05856724972962 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773965_at SPCC63.05.S1 --- 3.0576474398827 --- --- --- --- 1.02997314929962 1.63610351085663 0.336851507425308 2.69455361366272 0.888427972793579 0.850341975688934 0.953857004642487 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC63.05 /DEF=protein phosphatase associated (predicted) --- --- --- --- --- --- SPCC63.05 // |||protein phosphatase associated |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.46500334894244 1.58849142035321 1.35474600178402 -3.0576474398827 2.61613966878166 Max fold change at or above threshold 1 3.0576474398827 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773640_at YDR046C.S1 Amino acid permease involved in the uptake of cysteine, leucine, isoleucine and valine 3.0574657416942 1912.46960449219 714.959686279297 BAP3 6865 // amino acid transport // inferred from direct assay 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from sequence similarity 15171 // amino acid transporter activity // inferred from direct assay 681.39697265625 1772.54809570313 2052.39111328125 748.522399902344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR046C /GEN=BAP3 /DB_XREF=GI:6320251 /SEG=NC_001136:-548758,550572 /DEF=branched-chain amino acid permease /NOTE=Bap3p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 10654085]; go_function: amino acid transporter activity [goid GO:0015171] [evidence IDA] [pmid 10654085]; go_process: amino acid transport [goid GO:0006865] [evidence IDA] [pmid 10654085] --- --- --- --- --- S0002453 // span:94-113,117-139,167-189,204-223,236-258,284-306,327-344,373-395,423-440,450-472,493-515,530-552 // numtm:12 S0002453 // BAP3 SGDID:S0002453, Chr IV from 550573-548759, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023532 // cdna:GeneFinder chromosome:SGD1:IV:548759:550543:-1 // ensembl // 11 // --- /// GENSCAN00000025132 // cdna:Genscan chromosome:SGD1:IV:548759:550543:-1 // ensembl // 11 // --- /// YDR046C // cdna:known chromosome:SGD1:IV:548759:550573:-1 gene:YDR046C // ensembl // 11 // --- --- No cerevisiae_gene 3.0574657416942 2.60134424840971 -1.31299162174578 3.01203438765003 1.09851148440596 Max fold change at or above threshold 4 3.0574657416942 Max fold change at or above threshold -0.901644467148562 0.654267087041132 1.05330529101905 -0.805927910911621 1313.71464538574 701.293797908158 0.533825058867513 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778582_at SPBC106.08c.S1 --- 3.05649819120298 --- --- --- --- 10.7540435791016 20.9959354400635 3.51841974258423 4.81563520431519 0.366210997104645 0.171387001872063 0.466064006090164 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC106.08c /GEN=B13958-1 /DEF=B13958 domain --- --- --- --- --- --- SPBC106.08c // |B13958-1||B13958 domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.76763746887335 1.95237589336769 1.00793238499554 -3.05649819120298 -2.23315162441397 Max fold change at or above threshold 4 3.05649819120298 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771702_at YJR152W.S1 Allantoin permease; ureidosuccinate permease; expression is constitutive but sensitive to nitrogen catabolite repression 3.05611170912461 971.538787841797 354.364227294922 DAL5 15719 // allantoate transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from mutant phenotype 15124 // allantoate transporter activity // inferred from sequence similarity /// 15124 // allantoate transporter activity // inferred from mutant phenotype 333.009460449219 925.363464355469 1017.71411132813 375.718994140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR152W /GEN=DAL5 /DB_XREF=GI:6322612 /SEG=NC_001142:+719581,721212 /DEF=Allantoin permease; ureidosuccinate permease; expression is constitutive but sensitive to nitrogen catabolite repression /NOTE=Dal5p; go_component: plasma membrane [goid GO:0005886] [evidence IMP,ISS] [pmid 3275614]; go_function: allantoate transporter activity [goid GO:0015124] [evidence IMP,ISS] [pmid 3275614]; go_process: allantoate transport [goid GO:0015719] [evidence IMP] [pmid 3275614] --- --- --- --- --- S0003913 // span:86-108,123-145,152-174,179-201,214-236,246-268,318-340,355-377,390-410,420-442,449-471,481-503 // numtm:12 S0003913 // DAL5 SGDID:S0003913, Chr X from 719581-721212, Verified ORF // sgd // 11 // --- /// GENSCAN00000024255 // cdna:Genscan chromosome:SGD1:X:719581:721212:1 // ensembl // 11 // --- /// GENEFINDER00000024345 // cdna:GeneFinder chromosome:SGD1:X:719581:721212:1 // ensembl // 11 // --- /// YJR152W // cdna:known chromosome:SGD1:X:719581:721212:1 gene:YJR152W // ensembl // 11 // --- --- No cerevisiae_gene -1.52257748544335 2.77879031756991 1.27315553973615 3.05611170912461 1.12825321428945 Max fold change at or above threshold 4 3.05611170912461 Max fold change at or above threshold -0.919727523827072 0.731484517798592 0.988915883717585 -0.800672877689104 662.951507568359 358.738907525808 0.541123903378133 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773914_at SPBP23A10.04.S1 --- 3.05600140589303 --- --- --- --- 0.390724182128906 0.253188014030457 0.769577145576477 0.203237116336823 0.919434010982513 0.901123046875 0.828612983226776 0.985840022563934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP23A10.04 /GEN=apc2 /DEF=anaphase-promoting complex (APC) (PMID 12477395) --- --- --- --- --- --- SPBP23A10.04 // |apc2||anaphase-promoting complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.60532628503888 -1.54321753194014 3.05600140589303 1.96961739450921 -1.92250406407737 Max fold change at or above threshold 0 3.05600140589303 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772446_at YDL189W.S1 Protein of unknown function, identified as a high copy suppressor of psk1 psk2 mutations that confer temperature-sensitivity for galactose utilization; proposed to bind single-stranded nucleic acids via its R3H domain 3.05487756786618 278.220611572266 831.957092285156 RBS1 6012 // galactose metabolism // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay --- 796.695251464844 295.646728515625 260.794494628906 867.218933105469 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL189W /GEN=RBS1 /DB_XREF=GI:9755328 /SEG=NC_001136:+122217,123590 /DEF=RNA-Binding Suppressor of PAS kinase /NOTE=Rbs1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002348 // RBS1 SGDID:S0002348, Chr IV from 122217-123590, Verified ORF // sgd // 11 // --- /// GENSCAN00000024962 // cdna:Genscan chromosome:SGD1:IV:122259:123590:1 // ensembl // 11 // --- /// YDL189W // cdna:known chromosome:SGD1:IV:122217:123590:1 gene:YDL189W // ensembl // 11 // --- --- No cerevisiae_gene 1.02329454675553 -2.69475415968534 -1.08036864310475 -3.05487756786618 1.08852027360645 Max fold change at or above threshold 4 3.05487756786618 Max fold change at or above threshold 0.751944315760171 -0.807453901650661 -0.9159234588022 0.971433044692689 555.088851928711 321.308898108875 0.578842282622783 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772738_at YHR176W.S1 Flavin-containing monooxygenase, localized to the cytoplasmic face of the ER membrane; catalyzes oxidation of biological thiols to maintain the ER redox buffer ratio for correct folding of disulfide-bonded proteins 3.05447608224222 196.500160217285 374.465316772461 FMO1 6457 // protein folding // inferred from direct assay 5789 // endoplasmic reticulum membrane // inferred from direct assay 4497 // monooxygenase activity // traceable author statement 348.432312011719 182.096572875977 210.903747558594 400.498321533203 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR176W /GEN=FMO1 /DB_XREF=GI:41629686 /SEG=NC_001140:+454227,455525 /DEF=Flavin-containing monooxygenase, localized to the cytoplasmic face of the ER membrane; catalyzes oxidation of biological thiols to maintain the ER redox buffer ratio for correct folding of disulfide-bonded proteins /NOTE=Fmo1p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 10077572]; go_function: monooxygenase activity [goid GO:0004497] [evidence TAS] [pmid 10077572]; go_process: protein folding [goid GO:0006457] [evidence IDA] [pmid 10077572] --- --- --- --- --- --- S0001219 // FMO1 SGDID:S0001219, Chr VIII from 454228-455526, Verified ORF // sgd // 11 // --- /// GENSCAN00000016700 // cdna:Genscan chromosome:SGD1:VIII:454228:455526:1 // ensembl // 11 // --- /// GENEFINDER00000020161 // cdna:GeneFinder chromosome:SGD1:VIII:454228:455526:1 // ensembl // 11 // --- /// YHR176W // cdna:known chromosome:SGD1:VIII:454228:455526:1 gene:YHR176W // ensembl // 11 // --- --- No cerevisiae_gene -3.05447608224222 -1.91344793868818 1.43225340553872 -1.65209161072359 1.14942933742532 Max fold change at or above threshold 4 3.05447608224222 Max fold change at or above threshold 0.596221412534013 -0.979213078946092 -0.706368428524627 1.08936009493671 285.482738494873 105.580866761062 0.369832751772339 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778034_at YMR028W.S1 Essential protein involved in the TOR signaling pathway; physically associates with the protein phosphatase 2A and the SIT4 protein phosphatase catalytic subunits 3.05202186524872 175.799270629883 409.216766357422 TAP42 7165 // signal transduction // inferred from mutant phenotype --- 5515 // protein binding // traceable author statement 401.599945068359 131.584884643555 220.013656616211 416.833587646484 0.000244141003349796 0.00122069998178631 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR028W /GEN=TAP42 /DB_XREF=GI:6323670 /SEG=NC_001145:+327481,328581 /DEF=Two A phosphatase Associated Protein, apparant MW of 42 kDA /NOTE=Tap42p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 8756348]; go_process: cell growth and/or maintenance [goid GO:0008151] [evidence IMP] [pmid 8756348]; go_process: signal transduction [goid GO:0007165] [evidence IMP] [pmid 8756348] --- --- --- --- --- --- S0004630 // TAP42 SGDID:S0004630, Chr XIII from 327481-328581, Verified ORF // sgd // 11 // --- /// GENSCAN00000018739 // cdna:Genscan chromosome:SGD1:XIII:327481:328581:1 // ensembl // 11 // --- /// GENEFINDER00000021856 // cdna:GeneFinder chromosome:SGD1:XIII:327481:328581:1 // ensembl // 11 // --- /// YMR028W // cdna:known chromosome:SGD1:XIII:327481:328581:1 gene:YMR028W // ensembl // 11 // --- --- No cerevisiae_gene -1.1518336600018 -3.05202186524872 1.2365529813269 -1.82534098675931 1.03793238212603 Max fold change at or above threshold 4 3.05202186524872 Max fold change at or above threshold 0.781159532883313 -1.15230011986612 -0.519100392108994 0.890240979091803 292.508018493652 139.653837638058 0.477435929302868 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778783_at YPL038W.S1 Zinc-finger DNA-binding protein, involved in regulating expression of the methionine biosynthetic genes, similar to Met32p 3.05171889581633 118.216579437256 350.020370483398 MET31 96 // sulfur amino acid metabolism // inferred from direct assay /// 45449 // regulation of transcription // inferred from direct assay /// 45449 // regulation of transcription // traceable author statement 5634 // nucleus // inferred from direct assay /// 5634 // nucleus // inferred from physical interaction /// 5737 // cytoplasm // inferred from direct assay 3677 // DNA binding // inferred from direct assay /// 3704 // specific RNA polymerase II transcription factor activity // inferred from direct assay 350.953796386719 121.43115234375 115.002006530762 349.086944580078 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL038W /GEN=MET31 /DB_XREF=GI:6325219 /SEG=NC_001148:+480530,481063 /DEF=Zinc-finger DNA-binding protein, involved in regulating expression of the methionine biosynthetic genes, similar to Met32p /NOTE=Met31p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 9799240]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 9799240]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IDA] [pmid 9199298]; go_process: regulation of transcription [goid GO:0045449] [evidence TAS] [pmid 10747029]; go_process: regulation of transcription [goid GO:0045449] [evidence IDA] [pmid 9199298]; go_process: sulfur amino acid metabolism [goid GO:0000096] [evidence IDA] [pmid 9199298] --- --- --- --- --- --- S0005959 // MET31 SGDID:S0005959, Chr XVI from 480532-481065, Verified ORF // sgd // 11 // --- /// GENSCAN00000017159 // cdna:Genscan chromosome:SGD1:XVI:480550:481065:1 // ensembl // 11 // --- /// YPL038W // cdna:known chromosome:SGD1:XVI:480532:481065:1 gene:YPL038W // ensembl // 11 // --- --- No cerevisiae_gene 1.12993982463039 -2.89014630605852 -1.11473744809104 -3.05171889581633 -1.00534781330447 Max fold change at or above threshold 4 3.05171889581633 Max fold change at or above threshold 0.872818027141095 -0.841830410608994 -0.889859331111688 0.858871714579586 234.118474960327 133.859885787515 0.571761309355013 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770779_at SPAC1D4.14.S1 --- 3.05080124124364 --- --- --- --- 2.33087015151978 7.00980758666992 3.23342776298523 1.19930970668793 0.567627012729645 0.303710997104645 0.432372987270355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1D4.14 /DEF=THO complex (predicted) --- --- --- --- --- --- SPAC1D4.14 // ||SPAC22F3.14c|THO complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.32488005088449 3.00737798804424 -3.05080124124364 1.38721917258109 -1.94350978610589 Max fold change at or above threshold 2 3.05080124124364 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779187_at SPAC20G4.06c.S1 --- 3.04979552634599 --- --- --- --- 1.44448614120483 0.473633766174316 1.80070948600769 3.58603811264038 0.919434010982513 0.994140982627869 0.943848013877869 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20G4.06c /GEN=adf1 /DEF=cofilin --- --- --- --- --- --- D89939 // Schizosaccharomyces pombe mRNA for actin depolymerazing factor, complete cds. // gb // 11 // --- /// SPAC20G4.06c // |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.28592050760554 -3.04979552634599 -1.48974478104287 1.24660904292632 2.48257010596813 Max fold change at or above threshold 1 3.04979552634599 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778646_at SPAC144.04c.S1 --- 3.04946571870362 --- --- --- --- 0.507053256034851 0.326478451490402 1.29735481739044 1.54624152183533 0.850341975688934 0.976073980331421 0.725830018520355 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC144.04c /GEN=spe1 /DEF=ornithine decarboxylase --- --- --- --- --- --- D89177 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1007. // gb // 10 // --- /// AJ243276 // Schizosaccharomyces pombe mRNA for ornithine decarboxylase. // gb // 11 // --- /// SPAC144.04c // |spe1||ornithine decarboxylase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.5858962952468 -1.55309869218048 -1.54244751300174 2.55861648051674 3.04946571870362 Max fold change at or above threshold 0 3.04946571870362 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775348_at SPCC4B3.12.S1 --- 3.04933811666865 --- --- --- --- 3.77320098876953 6.06504344940186 4.95357227325439 1.95605409145355 0.0952147990465164 0.219482004642487 0.030273400247097 0.0805663987994194 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4B3.12 /DEF=SET domain --- --- --- --- --- --- SPCC4B3.12 // |set9||histone lysine methyltransferase Set9 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -3.04933811666865 1.60740004771909 -1.38287089096878 1.31283021710163 -1.92898601590596 Max fold change at or above threshold 3 3.04933811666865 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1776483_at YCL014W.S1 Protein involved in bud-site selection and required for axial budding pattern; localizes with septins to bud neck in mitosis and may constitute an axial landmark for next round of budding 3.0473057598561 164.071411132813 400.604858398438 BUD3 282 // bud site selection // traceable author statement /// 910 // cytokinesis // traceable author statement /// 910 // cytokinesis // inferred from mutant phenotype /// 7120 // axial bud site selection // traceable author statement 142 // contractile ring (sensu Saccharomyces) // traceable author statement /// 5935 // bud neck // inferred from direct assay --- 358.187133789063 117.542236328125 210.6005859375 443.022583007813 0.000244141003349796 0.000732421991415322 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL014W /GEN=BUD3 /DB_XREF=GI:10383775 /SEG=NC_001135:+96280,101190 /DEF=Protein involved in bud-site selection and required for axial budding pattern; localizes with septins to bud neck in mitosis and may constitute ''axial landmark'' for next round of budding /NOTE=Bud3p; go_component: contractile ring (sensu Saccharomyces) [goid GO:0000142] [evidence TAS] [pmid 9891811]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: axial budding [goid GO:0007120] [evidence TAS] [pmid 9891811]; go_process: bud site selection [goid GO:0000282] [evidence TAS] [pmid 9891811]; go_process: cytokinesis [goid GO:0000910] [evidence TAS] [pmid 9891811] --- --- --- --- scop // a.4.5.TnsA endonuclease, C-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; TnsA endonuclease, C-terminal domain // 5.19999980926514 --- S0000520 // BUD3 SGDID:S0000520, Chr III from 96280-101190, Verified ORF // sgd // 10 // --- /// GENSCAN00000022454 // cdna:Genscan chromosome:SGD1:III:96280:101190:1 // ensembl // 10 // --- /// GENEFINDER00000023399 // cdna:GeneFinder chromosome:SGD1:III:96280:101190:1 // ensembl // 10 // --- /// YCL014W // cdna:known chromosome:SGD1:III:96280:101190:1 gene:YCL014W // ensembl // 10 // --- --- No cerevisiae_gene -1.80234041685743 -3.0473057598561 -1.15635043309413 -1.70078887575062 1.2368467240052 Max fold change at or above threshold 4 3.0473057598561 Max fold change at or above threshold 0.519804260510407 -1.12937034404348 -0.491627892253532 1.1011939757866 282.338134765625 145.918386565281 0.516821387540903 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776172_at YBR072C-A.S1 Identified by fungal homology and RT-PCR 3.04639753236512 37.7387542724609 13.3491969108582 --- --- --- --- 14.8603515625 45.2705383300781 30.2069702148438 11.8380422592163 0.149657994508743 0.018554700538516 0.0676269978284836 0.0805663987994194 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR072C-A /GEN=HSP26 /DB_XREF=GI:33438766 /SEG=NC_001134:-382818,382979 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ybr072c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028532 // YBR072C-A SGDID:S0028532, Chr II from 383016-382855, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YBR072C-A // cdna:known chromosome:SGD1:II:382855:383016:-1 gene:YBR072C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.17497545919038 3.04639753236512 -1.06787984750808 2.03272244857725 -1.25530482465804 Max fold change at or above threshold 4 3.04639753236512 Max fold change at or above threshold -0.693063569951316 1.27969329106319 0.302495828324471 -0.889125549436347 25.5439755916595 15.4150708425059 0.603471874892454 APPAAA No 4 0 APAA 3 1 0 No No x = 1
1771856_at SPAC22H12.03.S1 --- 3.04563304261066 --- --- --- --- 6.12500524520874 4.91453218460083 4.03917598724365 2.01107788085938 0.334473013877869 0.366210997104645 0.129638999700546 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22H12.03 /DEF=esteraselipase (predicted) --- --- --- --- --- --- SPAC22H12.03 // |||esterase/lipase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.8538655022903 -1.24630483943127 -1.93919050352642 -1.51639969750079 -3.04563304261066 Max fold change at or above threshold 3 3.04563304261066 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779494_at YFL011W.S1 Putative hexose transporter, expressed at low levels and expression is repressed by glucose 3.04388078957746 25.8266429901123 13.6379241943359 HXT10 8645 // hexose transport // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from sequence similarity 5353 // fructose transporter activity // inferred from genetic interaction /// 5354 // galactose transporter activity // inferred from genetic interaction /// 5355 // glucose transporter activity // inferred from genetic interaction /// 15578 // mannose transporter activity // inferred from genetic interaction 10.2687664031982 31.2569007873535 20.3963851928711 17.0070819854736 0.0239257998764515 0.000244141003349796 0.00292969006113708 0.00805663969367743 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL011W /GEN=HXT10 /DB_XREF=GI:14318510 /SEG=NC_001138:+112339,113979 /DEF=Putative hexose transporter, expressed at low levels and expression is repressed by glucose /NOTE=Hxt10p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 8929273]; go_function: fructose transporter activity [goid GO:0005353] [evidence IGI] [pmid 10618490]; go_function: galactose transporter activity [goid GO:0005354] [evidence IGI] [pmid 10618490]; go_function: glucose transporter activity [goid GO:0005355] [evidence IGI] [pmid 10618490]; go_function: mannose transporter activity [goid GO:0015578] [evidence IGI] [pmid 10618490]; go_process: hexose transport [goid GO:0008645] [evidence IGI] [pmid 10618490] --- --- --- --- --- S0001883 // span:43-65,99-118,128-147,154-176,191-208,221-240,343-365,374-393,413-435,448-470,474-496 // numtm:11 S0001883 // HXT10 SGDID:S0001883, Chr VI from 112339-113979, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018529 // cdna:GeneFinder chromosome:SGD1:VI:112339:113979:1 // ensembl // 11 // --- /// GENSCAN00000023232 // cdna:Genscan chromosome:SGD1:VI:112339:113979:1 // ensembl // 11 // --- /// YFL011W // cdna:known chromosome:SGD1:VI:112339:113979:1 gene:YFL011W // ensembl // 11 // --- --- No cerevisiae_gene -1.90458133446679 3.04388078957746 1.64605851155812 1.98625466701809 1.65619523491904 Max fold change at or above threshold 4 3.04388078957746 Max fold change at or above threshold -1.08024000056832 1.31551010440947 0.0758057600711299 -0.31107586391228 19.7322835922241 8.76056911801735 0.443971377011306 PAPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1776350_at YLR431C.S1 Peripheral membrane protein, required for autophagy and for the cytoplasm-to-vacuole targeting (Cvt) pathway 3.04343836875365 79.5074272155762 199.74055480957 ATG23 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6914 // autophagy // inferred from mutant phenotype 19898 // extrinsic to membrane // inferred from direct assay --- 186.056640625 75.2671279907227 83.7477264404297 213.424468994141 0.000244141003349796 0.00292969006113708 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR431C /GEN=ATG23 /DB_XREF=GI:6323463 /SEG=NC_001144:-1000338,1001699 /DEF=Peripheral membrane protein, required for autophagy and for the cytoplasm-to-vacuole targeting (Cvt) pathway /NOTE=Atg23p; go_component: extrinsic to membrane [goid GO:0019898] [evidence IDA] [pmid 14504273]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: autophagy [goid GO:0006914] [evidence IMP] [pmid 14504273]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 14504273] --- --- --- --- --- --- S0004423 // ATG23 SGDID:S0004423, Chr XII from 1001699-1000338, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018147 // cdna:Genscan chromosome:SGD1:XII:1000338:1001699:-1 // ensembl // 11 // --- /// GENEFINDER00000024637 // cdna:GeneFinder chromosome:SGD1:XII:1000338:1001699:-1 // ensembl // 11 // --- /// YLR431C // cdna:known chromosome:SGD1:XII:1000338:1001699:-1 gene:YLR431C // ensembl // 11 // --- --- No cerevisiae_gene -3.04343836875365 -2.47195084483539 1.36007029371936 -2.22163213896133 1.14709406918886 Max fold change at or above threshold 4 3.04343836875365 Max fold change at or above threshold 0.659599394882803 -0.914221959334564 -0.793750746677905 1.04837331112967 139.623991012573 70.3952277286077 0.504177163380673 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778769_at YKL051W.S1 Plasma membrane protein that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, at least partially mediates proper localization of Stt4p to the plasma membrane 3.04337633131073 332.616012573242 867.320220947266 SFK1 6646 // phosphatidylethanolamine biosynthesis // inferred from mutant phenotype /// 7033 // vacuole organization and biogenesis // inferred from mutant phenotype /// 30036 // actin cytoskeleton organization and biogenesis // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay /// 5886 // plasma membrane // inferred from mutant phenotype --- 805.485717773438 264.66845703125 400.563568115234 929.154724121094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL051W /GEN=SFK1 /DB_XREF=GI:6322800 /SEG=NC_001143:+340957,342018 /DEF=Suppressor of PI Four Kinase /NOTE=Sfk1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA,IMP] [pmid 12015967]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence IMP] [pmid 12015967]; go_process: phosphatidylethanolamine biosynthesis [goid GO:0006646] [evidence IMP] [pmid 12015967]; go_process: vacuole organization and biogenesis [goid GO:0007033] [evidence IMP] [pmid 12015967] --- --- --- --- --- S0001534 // span:12-34,63-85,129-151,161-183,232-254,269-288 // numtm:6 S0001534 // SFK1 SGDID:S0001534, Chr XI from 340957-342018, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022950 // cdna:GeneFinder chromosome:SGD1:XI:341029:342018:1 // ensembl // 11 // --- /// GENSCAN00000018378 // cdna:Genscan chromosome:SGD1:XI:341311:342018:1 // ensembl // 11 // --- /// YKL051W // cdna:known chromosome:SGD1:XI:340957:342018:1 gene:YKL051W // ensembl // 11 // --- --- No cerevisiae_gene 1.55542249579793 -3.04337633131073 1.30479686488176 -2.01088112322216 1.15353345642119 Max fold change at or above threshold 4 3.04337633131073 Max fold change at or above threshold 0.646903285168054 -1.05541545018574 -0.627661363114302 1.03617352813199 599.968116760254 317.694477250635 0.529518933382898 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772514_at YJL080C.S1 Essential RNA-binding G protein effector of mating response pathway, predominantly associated with nuclear envelope and ER, interacts in mRNA-dependent manner with translating ribosomes via multiple KH domains, similar to vertebrate vigilins 3.04263864450282 957.679168701172 1057.65844726563 SCP160 7059 // chromosome segregation // inferred from mutant phenotype /// 8298 // intracellular mRNA localization // inferred from physical interaction 5789 // endoplasmic reticulum membrane // inferred from direct assay /// 5844 // polysome // inferred from direct assay /// 42175 // nuclear envelope-endoplasmic reticulum network // inferred from direct assay 3723 // RNA binding // inferred from direct assay 983.17822265625 794.979309082031 1120.37902832031 1132.138671875 0.000244141003349796 0.00415039015933871 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL080C /GEN=SCP160 /DB_XREF=GI:6322381 /SEG=NC_001142:-285474,289142 /DEF=May be required during cell division for faithful partitioning of the ER-nuclear envelope membranes, involved in control of mitotic chromsome transmission /NOTE=Scp160p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 11278502]; go_component: nuclear envelope-endoplasmic reticulum network [goid GO:0042175] [evidence IDA] [pmid 8533468]; go_component: polysome [goid GO:0005844] [evidence IDA] [pmid 11278502]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 11278502]; go_process: chromosome segregation [goid GO:0007059] [evidence IMP] [pmid 8533468]; go_process: mRNA localization, intracellular [goid GO:0008298] [evidence IPI] [pmid 11278502] --- --- --- --- --- --- S0003616 // SCP160 SGDID:S0003616, Chr X from 289142-285474, reverse complement, Verified ORF // sgd // 11 // --- /// X04679 // Yeast mRNA for protein HX homologous to chicken histone H2AF. // gb // 11 // --- /// GENSCAN00000024077 // cdna:Genscan chromosome:SGD1:X:285474:289142:-1 // ensembl // 11 // --- /// GENEFINDER00000024440 // cdna:GeneFinder chromosome:SGD1:X:285474:289142:-1 // ensembl // 11 // --- /// YJL080C // cdna:known chromosome:SGD1:X:285474:289142:-1 gene:YJL080C // ensembl // 11 // --- --- No cerevisiae_gene 3.04263864450282 -1.23673435449727 1.12574278053328 1.13954825534417 1.15150910159127 Max fold change at or above threshold 4 3.04263864450282 Max fold change at or above threshold -0.15590041002404 -1.35392354423534 0.717482629741244 0.792341324518132 1007.6688079834 157.091218190972 0.155895684123984 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777870_at SPAC1093.05.S1 --- 3.04227628267244 --- --- --- --- 4.70190811157227 1.56380569934845 3.40433859825134 1.5455230474472 0.625244140625 0.850341975688934 0.696289002895355 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1093.05 /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPAC1093.05 // |||ATP-dependent RNA helicase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.55023947817105 -3.00670864259626 -2.13839356388084 -1.38115172033341 -3.04227628267244 Max fold change at or above threshold 2 3.04227628267244 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772229_at YKL163W.S1 O-glycosylated covalently-bound cell wall protein required for cell wall stability; expression is cell cycle regulated, peaking in M/G1 and also subject to regulation by the cell integrity pathway 3.04208462912037 2950.03430175781 5522.93139648438 PIR3 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 9277 // cell wall (sensu Fungi) // traceable author statement /// 9277 // cell wall (sensu Fungi) // inferred from direct assay 5199 // structural constituent of cell wall // inferred from physical interaction 6253.44091796875 2522.55810546875 3377.51049804688 4792.421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL163W /GEN=PIR3 /DB_XREF=GI:6322685 /SEG=NC_001143:+144406,145383 /DEF=Protein containing tandem internal repeats /NOTE=Pir3p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence TAS] [pmid 10407261]; go_function: structural constituent of cell wall [goid GO:0005199] [evidence IPI] [pmid 10407261]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 10407261] --- --- --- --- --- --- S0001646 // PIR3 SGDID:S0001646, Chr XI from 144406-145383, Verified ORF // sgd // 11 // --- /// GENSCAN00000018297 // cdna:Genscan chromosome:SGD1:XI:144406:145383:1 // ensembl // 11 // --- /// GENEFINDER00000023041 // cdna:GeneFinder chromosome:SGD1:XI:144406:145383:1 // ensembl // 11 // --- /// YKL163W // cdna:known chromosome:SGD1:XI:144406:145383:1 gene:YKL163W // ensembl // 11 // --- --- No cerevisiae_gene -3.04208462912037 -2.47900768050166 -1.26189439735526 -1.85149414682351 -1.30486027338083 Max fold change at or above threshold 4 3.04208462912037 Max fold change at or above threshold 1.23109204102861 -1.04612938832085 -0.52429152653395 0.339328873826189 4236.48284912109 1638.34871937149 0.386723793703397 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772594_at YNL087W.S1 Bud-specific protein with a potential role in membrane trafficking; GFP-fusion protein migrates from the cell surface to intracellular vesicles near vacuole; contains 3 calcium and lipid binding domains; mRNA is targeted to the bud via the mRNA transport system involving She2p 3.04133283622842 275.097915649414 750.279418945313 TCB2 --- 5933 // bud // inferred from direct assay --- 740.364624023438 243.434265136719 306.761566162109 760.194213867188 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL087W /GEN=TCB2 /DB_XREF=GI:6324242 /SEG=NC_001146:+462411,465947 /DEF=Contains three calcium and lipid binding domains; may be involved in membrane-trafficking; localized to the bud; GFP-fusion protein migrates from the cell surface to intracellular vesicles near vacuole; mRNA is targeted to the bud via the mRNA transport system involving She2p; C-terminal portions of Tcb1p, Tcb2p and Tcb3p interact /NOTE=Tcb2p; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 13679573]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005031 // span:104-126 // numtm:1 S0005031 // TCB2 SGDID:S0005031, Chr XIV from 462411-465947, Verified ORF // sgd // 10 // --- /// GENSCAN00000019962 // cdna:Genscan chromosome:SGD1:XIV:462411:465947:1 // ensembl // 10 // --- /// GENEFINDER00000020649 // cdna:GeneFinder chromosome:SGD1:XIV:462411:465947:1 // ensembl // 10 // --- /// YNL087W // cdna:known chromosome:SGD1:XIV:462411:465947:1 gene:YNL087W // ensembl // 10 // --- --- No cerevisiae_gene -1.31448051718656 -3.04133283622842 1.05775533889403 -2.41348560475203 1.02678354583717 Max fold change at or above threshold 4 3.04133283622842 Max fold change at or above threshold 0.825868871414389 -0.976689995875621 -0.746977349096309 0.897798473557542 512.688667297363 275.680516128613 0.537715252380869 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770963_at YHR070W.S1 tRNA(m(1)G37)methyltransferase, methylates a tRNA base adjacent to the anticodon that has a role in prevention of frameshifting; highly conserved across Archaea, Bacteria, and Eukarya 3.04011838879555 98.6068267822266 297.553970336914 TRM5 30488 // tRNA methylation // inferred from genetic interaction /// 30488 // tRNA methylation // inferred from mutant phenotype /// 30488 // tRNA methylation // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 16423 // tRNA (guanine) methyltransferase activity // inferred from genetic interaction /// 16423 // tRNA (guanine) methyltransferase activity // inferred from sequence similarity /// 16423 // tRNA (guanine) methyltransferase activity // inferred from mutant phenotype 259.016662597656 112.014122009277 85.1995315551758 336.091278076172 0.000244141003349796 0.00415039015933871 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR070W /GEN=TRM5 /DB_XREF=GI:6321861 /SEG=NC_001140:+234882,236381 /DEF=tRNA modification enzyme /NOTE=Trm5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: tRNA (guanine) methyltransferase activity [goid GO:0016423] [evidence IGI,IMP,ISS] [pmid 11226173]; go_process: tRNA methylation [goid GO:0030488] [evidence IGI,IMP,ISS] [pmid 11226173] --- --- --- --- --- --- S0001112 // TRM5 SGDID:S0001112, Chr VIII from 234882-236381, Verified ORF // sgd // 11 // --- /// GENSCAN00000016614 // cdna:Genscan chromosome:SGD1:VIII:234939:236381:1 // ensembl // 11 // --- /// GENEFINDER00000020276 // cdna:GeneFinder chromosome:SGD1:VIII:234939:237694:1 // ensembl // 10 // --- /// YHR070W // cdna:known chromosome:SGD1:VIII:234882:236381:1 gene:YHR070W // ensembl // 11 // --- YHR070C-A // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene 1.8676194921966 -2.31235720953295 -1.04675287019824 -3.04011838879555 1.29756624421588 Max fold change at or above threshold 4 3.04011838879555 Max fold change at or above threshold 0.509516889907953 -0.71964079593811 -0.943850253934913 1.15397415996507 198.08039855957 119.59616107936 0.603775850357009 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770170_at YGR258C.S1 Single-stranded DNA endonuclease, cleaves single-stranded DNA during nucleotide excision repair to excise damaged DNA; subunit of Nucleotide Excision Repair Factor 3 (NEF3); homolog of human XPG protein 3.03920041123729 391.778869628906 786.688690185547 RAD2 6295 // nucleotide-excision repair, DNA incision, 3'-to lesion // traceable author statement 112 // nucleotide excision repair factor 3 complex // traceable author statement 14 // single-stranded DNA specific endodeoxyribonuclease activity // traceable author statement 734.346984863281 336.925598144531 446.632141113281 839.030395507813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR258C /GEN=RAD2 /DB_XREF=GI:6321697 /SEG=NC_001139:-1007676,1010771 /DEF=Single-stranded DNA endonuclease, cleaves single-stranded DNA during nucleotide excision repair to excise damaged DNA; subunit of Nucleotide Excision Repair Factor 3 (NEF3); homolog of human XPG protein /NOTE=Rad2p; go_component: nucleotide excision repair factor 3 complex [goid GO:0000112] [evidence TAS] [pmid 10915862]; go_function: single-stranded DNA specific endodeoxyribonuclease activity [goid GO:0000014] [evidence TAS] [pmid 10915862]; go_process: nucleotide-excision repair, DNA incision, 3'-to lesion [goid GO:0006295] [evidence TAS] [pmid 10915862] --- --- --- --- --- --- S0003490 // RAD2 SGDID:S0003490, Chr VII from 1010772-1007677, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019540 // cdna:Genscan chromosome:SGD1:VII:1007677:1010772:-1 // ensembl // 11 // --- /// GENEFINDER00000021618 // cdna:GeneFinder chromosome:SGD1:VII:1007677:1010772:-1 // ensembl // 11 // --- /// YGR258C // cdna:known chromosome:SGD1:VII:1007677:1010772:-1 gene:YGR258C // ensembl // 11 // --- --- No cerevisiae_gene -3.03920041123729 -2.17955236677585 1.23073602957427 -1.64418750301498 1.14255306115817 Max fold change at or above threshold 4 3.03920041123729 Max fold change at or above threshold 0.614219923397483 -1.06794355566588 -0.603589230097272 1.05731286236567 589.233779907227 236.256102135826 0.400954782621294 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770171_at SPCC330.12c.S1 --- 3.03905534771428 --- --- --- --- 7.6691575050354 7.76125955581665 2.5235333442688 5.94537925720215 0.129638999700546 0.0952147990465164 0.5 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC330.12c /GEN=sdh3 /DEF=succinate dehydrogenase (ubiquinone) --- --- --- --- --- --- SPCC330.12c // |sdh3||succinate dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.47275568218071 1.01200940921096 -1.67087924166378 -3.03905534771428 -1.28993579269903 Max fold change at or above threshold 4 3.03905534771428 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775804_at SPAC19A8.12.S1 --- 3.03896407240632 --- --- --- --- 7.17797803878784 5.79727697372437 5.30030536651611 2.3619818687439 0.274170011281967 0.149657994508743 0.0239257998764515 0.129638999700546 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19A8.12 /DEF=pyrophosphatase (predicted) --- --- --- --- --- --- SPAC19A8.12 // |||pyrophosphatase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.8155557457148 -1.23816372261001 -1.12101523917725 -1.35425745168074 -3.03896407240632 Max fold change at or above threshold 3 3.03896407240632 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1773479_at YLR423C.S1 Protein that interacts with and is required for activation of Apg1p protein kinase; involved in autophagy but not in the Cvt (cytoplasm to vacuole targeting) pathway 3.03894418659151 194.688621520996 210.72412109375 ATG17 6914 // autophagy // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 19209 // kinase activator activity // inferred from mutant phenotype 199.650207519531 188.441040039063 200.93620300293 221.798034667969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR423C /GEN=ATG17 /DB_XREF=GI:6323455 /SEG=NC_001144:-971913,973166 /DEF=required for activation of Apg1 protein kinase /NOTE=Atg17p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11489916]; go_function: kinase activator activity [goid GO:0019209] [evidence IMP] [pmid 10995454]; go_process: autophagy [goid GO:0006914] [evidence IMP] [pmid 10995454] --- --- --- --- scop // a.4.5.SCF ubiquitin ligase complex WHB domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; SCF ubiquitin ligase complex WHB domain // 4.0 --- S0004415 // ATG17 SGDID:S0004415, Chr XII from 973166-971913, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018138 // cdna:Genscan chromosome:SGD1:XII:971913:972896:-1 // ensembl // 11 // --- /// GENEFINDER00000024901 // cdna:GeneFinder chromosome:SGD1:XII:971913:973166:-1 // ensembl // 11 // --- /// YLR423C // cdna:known chromosome:SGD1:XII:971913:973166:-1 gene:YLR423C // ensembl // 11 // --- --- No cerevisiae_gene -3.03894418659151 -1.05948368507277 1.47762291165365 1.00644124290866 1.11093315365711 Max fold change at or above threshold 4 3.03894418659151 Max fold change at or above threshold -0.219709716630729 -1.02554447607578 -0.127258616866408 1.37251280957292 202.706371307373 13.9100074166422 0.0686214613133684 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777894_at SPBC1718.02.S1 --- 3.03874955326309 --- --- --- --- 1.09306180477142 0.822273313999176 0.40948212146759 3.32154107093811 0.625732421875 0.932372987270355 0.850341975688934 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1718.02 /GEN=hop1 /DEF=horma domain protein (inferred from context) --- --- --- --- --- --- SPBC1718.02 // |hop1||horma domain protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.60683536165054 -1.32931689033571 2.52241187872488 -2.66937613992492 3.03874955326309 Max fold change at or above threshold 1 3.03874955326309 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772416_at YGL257C.S1 Mannosyltransferase involved in adding the 4th and 5th mannose residues of O-linked glycans 3.03804369397967 379.132293701172 163.833610534668 MNT2 6493 // O-linked glycosylation // inferred from direct assay --- 33 // alpha-1,3-mannosyltransferase activity // inferred from direct assay 148.388946533203 307.452484130859 450.812103271484 179.278274536133 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL257C /GEN=MNT2 /DB_XREF=GI:6321180 /SEG=NC_001139:-12481,14157 /DEF=MaNnosylTransferase; involved in adding the 4th and 5th mannose residues of O-linked glycans /NOTE=Mnt2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: alpha-1,3-mannosyltransferase activity [goid GO:0000033] [evidence IDA] [pmid 10521541]; go_process: O-linked glycosylation [goid GO:0006493] [evidence IDA] [pmid 10521541] --- --- --- --- --- S0003226 // span:7-25 // numtm:1 S0003226 // MNT2 SGDID:S0003226, Chr VII from 14157-12481, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019157 // cdna:Genscan chromosome:SGD1:VII:12481:14157:-1 // ensembl // 11 // --- /// YGL257C // cdna:known chromosome:SGD1:VII:12481:14157:-1 gene:YGL257C // ensembl // 11 // --- --- No cerevisiae_gene 2.32732684560266 2.07193656477684 2.06705770740388 3.03804369397967 1.20816461552288 Max fold change at or above threshold 4 3.03804369397967 Max fold change at or above threshold -0.892183985418153 0.260706768558636 1.29977569596375 -0.668298479104236 271.48295211792 137.969306327578 0.508206151624765 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772062_s_at YFL061W.S1 Hypothetical protein /// Hypothetical protein 3.03723331485901 176.896697998047 177.226257324219 --- --- --- --- 173.698928833008 150.077346801758 203.716049194336 180.75358581543 0.000732421991415322 0.00585938012227416 0.00415039015933871 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL061W /GEN=COS4 /DB_XREF=GI:14318458 /SEG=NC_001138:+9545,10222 /DEF=Hypothetical ORF /NOTE=Yfl061wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001833 // YFL061W SGDID:S0001833, Chr VI from 9545-10222, Uncharacterized ORF // sgd // 11 // --- /// S0005279 // YNL335W SGDID:S0005279, Chr XIV from 11452-12129, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018541 // cdna:GeneFinder chromosome:SGD1:VI:9545:10222:1 // ensembl // 11 // --- /// GENSCAN00000023189 // cdna:Genscan chromosome:SGD1:VI:9545:10222:1 // ensembl // 11 // --- /// GENSCAN00000019775 // cdna:Genscan chromosome:SGD1:XIV:11452:12129:1 // ensembl // 11 // --- /// GENEFINDER00000020659 // cdna:GeneFinder chromosome:SGD1:XIV:11452:12129:1 // ensembl // 11 // --- /// YFL061W // cdna:known chromosome:SGD1:VI:9545:10222:1 gene:YFL061W // ensembl // 11 // --- /// YNL335W // cdna:known chromosome:SGD1:XIV:11452:12129:1 gene:YNL335W // ensembl // 11 // --- --- No cerevisiae_gene -3.03723331485901 -1.15739605299961 1.05725129447949 1.17281120017836 1.04061428029418 Max fold change at or above threshold 4 3.03723331485901 Max fold change at or above threshold -0.152238941807369 -1.22170286220454 1.20678210844194 0.167159695569964 177.061477661133 22.0873108299695 0.124743739415985 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1770150_at YNL107W.S1 Subunit of both the NuA4 histone H4 acetyltransferase complex and the SWR1 complex, may function to antagonize silencing near telomeres; interacts directly with Swc4p, has homology to human leukemogenic protein AF9, contains a YEATS domain 3.0371208537673 260.173950195313 784.385620117188 YAF9 6338 // chromatin remodeling // inferred from direct assay /// 6338 // chromatin remodeling // inferred from genetic interaction /// 6338 // chromatin remodeling // inferred from physical interaction /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype 812 // SWR1 complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 43189 // H4/H2A histone acetyltransferase complex // inferred from physical interaction --- 743.597351074219 244.836273193359 275.511627197266 825.173889160156 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL107W /GEN=YAF9 /DB_XREF=GI:6324222 /SEG=NC_001146:+420098,420778 /DEF=Yeast homolog of the human leukemogenic protein AF9; member of a yeast chromatin modifying complex /NOTE=Yaf9p; go_component: SWR1 complex [goid GO:0000812] [evidence IPI] [pmid 14690608]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 14645854]; go_process: chromatin remodeling [goid GO:0006338] [evidence IGI,IPI] [pmid 14690608] --- --- --- --- --- --- S0005051 // YAF9 SGDID:S0005051, Chr XIV from 420098-420778, Verified ORF // sgd // 11 // --- /// GENSCAN00000019947 // cdna:Genscan chromosome:SGD1:XIV:420098:420778:1 // ensembl // 11 // --- /// YNL107W // cdna:known chromosome:SGD1:XIV:420098:420778:1 gene:YNL107W // ensembl // 11 // --- --- No cerevisiae_gene 1.19064443291481 -3.0371208537673 1.37506179667423 -2.69896903676521 1.10970525643763 Max fold change at or above threshold 4 3.0371208537673 Max fold change at or above threshold 0.726255250443178 -0.910432962827397 -0.809771558875406 0.993949271259625 522.27978515625 304.737990923874 0.583476518879063 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771662_at SPBP4H10.07.S1 --- 3.03697133661608 --- --- --- --- 4.12830543518066 1.35934948921204 3.8280930519104 6.44341468811035 0.398925989866257 0.696289002895355 0.466064006090164 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP4H10.07 /DEF=zinc finger protein --- --- --- --- --- --- SPBP4H10.07 // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.02528355158262 -3.03697133661608 1.41967794158345 -1.07842348114303 1.56078923647479 Max fold change at or above threshold 3 3.03697133661608 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778685_at YDR449C.S1 Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA 3.03692912462734 75.7205924987793 167.104705810547 UTP6 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction 30515 // snoRNA binding // inferred from physical interaction 150.072280883789 77.2149810791016 74.226203918457 184.137130737305 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR449C /GEN=UTP6 /DB_XREF=GI:6320657 /SEG=NC_001136:-1357568,1358890 /DEF=Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA /NOTE=Utp6p; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: snoRNA binding [goid GO:0030515] [evidence IPI] [pmid 12068309]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP,IPI] [pmid 12068309] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 2.29999995231628 --- S0002857 // UTP6 SGDID:S0002857, Chr IV from 1358892-1357570, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023700 // cdna:GeneFinder chromosome:SGD1:IV:1357570:1358892:-1 // ensembl // 10 // --- /// GENSCAN00000025451 // cdna:Genscan chromosome:SGD1:IV:1357570:1358892:-1 // ensembl // 10 // --- /// YDR449C // cdna:known chromosome:SGD1:IV:1357570:1358892:-1 gene:YDR449C // ensembl // 10 // --- --- No cerevisiae_gene 3.03692912462734 -1.94356430302107 -1.05739960299955 -2.02182346612599 1.22698961895498 Max fold change at or above threshold 4 3.03692912462734 Max fold change at or above threshold 0.525129268503017 -0.809832077586385 -0.86459532014727 1.14929812923064 121.412649154663 54.5763366243627 0.449511125935815 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776952_at SPAC144.01.S1 --- 3.03630197907815 --- --- --- --- 4.23055934906006 5.72843885421753 4.9080982208252 2.93121767044067 0.24609400331974 0.043701171875 0.0107421996071935 0.171387001872063 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC144.01 /DEF=sequence orphan --- --- --- --- --- --- SPAC144.01 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.07844415004018 1.35406181111495 -3.03630197907815 1.16015349646748 -1.44327710347899 Max fold change at or above threshold 4 3.03630197907815 Max fold change at or above threshold AAPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1777351_at YDR410C.S1 Farnesyl cysteine-carboxyl methyltransferase, mediates the carboxyl methylation step during C-terminal CAAX motif processing of a-factor and RAS proteins in the endoplasmic reticulum, localizes to the ER membrane 3.03569363863637 42.5905303955078 141.901916503906 STE14 7323 // peptide pheromone maturation // traceable author statement /// 7323 // peptide pheromone maturation // inferred from mutant phenotype 5789 // endoplasmic reticulum membrane // inferred from direct assay 4671 // protein-S-isoprenylcysteine O-methyltransferase activity // inferred from mutant phenotype /// 4671 // protein-S-isoprenylcysteine O-methyltransferase activity // traceable author statement /// 4671 // protein-S-isoprenylcysteine O-methyltransferase activity // inferred from direct assay 115.037704467773 37.8950309753418 47.2860298156738 168.766128540039 0.000244141003349796 0.00195312988944352 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR410C /GEN=STE14 /DB_XREF=GI:6320618 /SEG=NC_001136:-1292360,1293079 /DEF=farnesyl cysteine-carboxyl methyltransferase /NOTE=Ste14p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA,TAS] [pmid 11451995]; go_function: protein-S-isoprenylcysteine O-methyltransferase activity [goid GO:0004671] [evidence IMP,TAS] [pmid 11451995]; go_process: peptide pheromone maturation [goid GO:0007323] [evidence TAS] [pmid 9015298] --- --- --- --- --- S0002818 // span:20-42,49-68,88-105,112-134,180-202 // numtm:5 S0002818 // STE14 SGDID:S0002818, Chr IV from 1293081-1292362, reverse complement, Verified ORF // sgd // 11 // --- /// YDR410C // cdna:known chromosome:SGD1:IV:1292362:1293081:-1 gene:YDR410C // ensembl // 11 // --- --- No cerevisiae_gene 2.85738225634296 -3.03569363863637 1.13532298436779 -2.43280531091748 1.46705055808304 Max fold change at or above threshold 4 3.03569363863637 Max fold change at or above threshold 0.370536556479428 -0.883624178877975 -0.730948344892433 1.24403596729098 92.246223449707 61.5093993278685 0.666795853831389 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778729_at YAR029W.S1 Member of DUP240 gene family but contains no transmembrane domains; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 3.03407391066059 597.154083251953 639.997589111328 --- --- 5737 // cytoplasm // inferred from direct assay --- 589.279968261719 554.99658203125 639.311584472656 690.715209960938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR029W /GEN=UIP3 /DB_XREF=GI:6319333 /SEG=NC_001133:+186317,186541 /DEF=Member of DUP240 gene family but contains no transmembrane domains; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Yar029wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12101299]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000077 // YAR029W SGDID:S0000077, Chr I from 186315-186539, Uncharacterized ORF // sgd // 11 // --- /// YAR029W // cdna:known chromosome:SGD1:I:186315:186539:1 gene:YAR029W // ensembl // 11 // --- YAR030C // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene -3.03407391066059 -1.06177224750645 1.28654292187183 1.08490296447463 1.17213420981955 Max fold change at or above threshold 4 3.03407391066059 Max fold change at or above threshold -0.494375971301922 -1.07291771014152 0.349921556516574 1.21737212492687 618.575836181641 59.2582763332373 0.0957979165481603 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772138_s_at YBL101W-B.S1 TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// Identified by expression profiling and mass spectrometry /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition 3.03377691336081 266.870590209961 788.571411132813 --- 6319 // Ty element transposition // inferred from sequence similarity 943 // retrotransposon nucleocapsid // inferred from sequence similarity 3723 // RNA binding // inferred from sequence similarity /// 3887 // DNA-directed DNA polymerase activity // inferred from sequence similarity /// 3964 // RNA-directed DNA polymerase activity // inferred from sequence similarity /// 4540 // ribonuclease activity // inferred from sequence similarity /// 5515 // protein binding // inferred from sequence similarity /// 8233 // peptidase activity // inferred from sequence similarity 755.638854980469 249.075286865234 284.665893554688 821.503967285156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL101W-B /GEN=ECM21 /DB_XREF=GI:6319369 /SEG=NC_001134:+29932,35245 /DEF=TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /NOTE=Ybl101w-bp; go_component: retrotransposon nucleocapsid [goid GO:0000943] [evidence ISS] [pmid 9582191]; go_function: DNA-directed DNA polymerase activity [goid GO:0003887] [evidence ISS] [pmid 9582191]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 9582191]; go_function: RNA-directed DNA polymerase activity [goid GO:0003964] [evidence ISS] [pmid 9582191]; go_function: peptidase activity [goid GO:0008233] [evidence ISS] [pmid 9582191]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 9582191]; go_function: ribonuclease activity [goid GO:0004540] [evidence ISS] [pmid 9582191]; go_process: Ty element transposition [goid GO:0006319] [evidence ISS] [pmid 9582191] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.60000002384186 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.70000004768372 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.79999995231628 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.5 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.59999990463257 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.70000004768372 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.79999995231628 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.90000009536743 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.69999980926514 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.80000019073486 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.90000009536743 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 6.30000019073486 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 7.90000009536743 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 9.19999980926514 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 9.5 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 7.59999990463257 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 7.80000019073486 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.39999961853027 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.5 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.69999980926514 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.89999961853027 --- S0002149 // YBL101W-B SGDID:S0002149, Chr II from 29932-31224,31226-35245, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0000524 // YCL019W SGDID:S0000524, Chr III from 85101-86390,86392-90414, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007345 // YDR034C-D SGDID:S0007345, Chr IV from 519352-518060,518058-514039, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007391 // YDR098C-B SGDID:S0007391, Chr IV from 651121-649817,649815-645853, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007410 // YDR210C-D SGDID:S0007410, Chr IV from 883922-882618,882616-878654, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007393 // YDR210W-B SGDID:S0007393, Chr IV from 872107-873399,873401-877420, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007401 // YDR365W-B SGDID:S0007401, Chr IV from 1206987-1208291,1208293-1212255, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0002962 // YFL002W-A SGDID:S0002962, Chr VI from 138199-139491,139493-143512, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007408 // YGR038C-B SGDID:S0007408, Chr VII from 567471-566167,566165-562203, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007370 // YGR161W-B SGDID:S0007370, Chr VII from 811743-813035,813037-817056, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0003788 // YJR027W SGDID:S0003788, Chr X from 472674-473975,473977-477942, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007376 // YLR227W-B SGDID:S0007376, Chr XII from 593440-594744,594746-598708, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007380 // YLR410W-B SGDID:S0007380, Chr XII from 941480-942772,942774-946793, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007385 // YNL054W-B SGDID:S0007385, Chr XIV from 519455-520759,520761-524705, one base removed to allow translational frameshift, Pseudogene Ty ORF // sgd // 11 // --- /// S0007354 // YOR192C-B SGDID:S0007354, Chr XV from 709732-708440,708438-704419, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007356 // YOR343W-B SGDID:S0007356, Chr XV from 970573-971866,971868-975886, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007360 // YPR137C-B SGDID:S0007360, Chr XVI from 810265-808961,808959-804997, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// GENSCAN00000021060 // cdna:Genscan chromosome:SGD1:II:31721:35245:1 // ensembl // 11 // --- /// GENEFINDER00000022351 // cdna:GeneFinder chromosome:SGD1:II:32123:35245:1 // ensembl // 11 // --- /// GENSCAN00000022450 // cdna:Genscan chromosome:SGD1:III:86890:90414:1 // ensembl // 11 // --- /// GENEFINDER00000023343 // cdna:GeneFinder chromosome:SGD1:III:87292:90414:1 // ensembl // 11 // --- /// GENEFINDER00000023421 // cdna:GeneFinder chromosome:SGD1:IV:514039:517161:-1 // ensembl // 11 // --- /// GENSCAN00000025121 // cdna:Genscan chromosome:SGD1:IV:514039:517563:-1 // ensembl // 11 // --- /// GENEFINDER00000023717 // cdna:GeneFinder chromosome:SGD1:IV:645853:649320:-1 // ensembl // 11 // --- /// GENSCAN00000025169 // cdna:Genscan chromosome:SGD1:IV:645853:649320:-1 // ensembl // 11 // --- /// GENSCAN00000025258 // cdna:Genscan chromosome:SGD1:IV:873896:877420:1 // ensembl // 11 // --- /// GENEFINDER00000023571 // cdna:GeneFinder chromosome:SGD1:IV:874298:877420:1 // ensembl // 11 // --- /// GENEFINDER00000023807 // cdna:GeneFinder chromosome:SGD1:IV:878654:882121:-1 // ensembl // 11 // --- /// GENSCAN00000025259 // cdna:Genscan chromosome:SGD1:IV:878654:882121:-1 // ensembl // 11 // --- /// GENEFINDER00000023755 // cdna:GeneFinder chromosome:SGD1:IV:1208788:1212255:1 // ensembl // 11 // --- /// GENSCAN00000025390 // cdna:Genscan chromosome:SGD1:IV:1208788:1212255:1 // ensembl // 11 // --- /// GENSCAN00000023241 // cdna:Genscan chromosome:SGD1:VI:139988:143512:1 // ensembl // 11 // --- /// GENEFINDER00000018556 // cdna:GeneFinder chromosome:SGD1:VI:140390:143512:1 // ensembl // 11 // --- /// GENSCAN00000019368 // cdna:Genscan chromosome:SGD1:VII:562203:565670:-1 // ensembl // 11 // --- /// GENEFINDER00000021698 // cdna:GeneFinder chromosome:SGD1:VII:562203:565670:-1 // ensembl // 11 // --- /// GENSCAN00000019370 // cdna:Genscan chromosome:SGD1:VII:569099:571402:-1 // ensembl // 11 // --- /// GENEFINDER00000021540 // cdna:GeneFinder chromosome:SGD1:VII:569099:571402:-1 // ensembl // 11 // --- /// GENSCAN00000019465 // cdna:Genscan chromosome:SGD1:VII:813532:817056:1 // ensembl // 11 // --- /// GENEFINDER00000021588 // cdna:GeneFinder chromosome:SGD1:VII:813934:817056:1 // ensembl // 11 // --- /// GENSCAN00000024153 // cdna:Genscan chromosome:SGD1:X:474475:477942:1 // ensembl // 11 // --- /// GENEFINDER00000024453 // cdna:GeneFinder chromosome:SGD1:X:474475:477942:1 // ensembl // 11 // --- /// GENSCAN00000017998 // cdna:Genscan chromosome:SGD1:XII:595241:598708:1 // ensembl // 11 // --- /// GENEFINDER00000024712 // cdna:GeneFinder chromosome:SGD1:XII:595241:598708:1 // ensembl // 11 // --- /// GENEFINDER00000024586 // cdna:GeneFinder chromosome:SGD1:XII:653460:656389:1 // ensembl // 11 // --- /// GENSCAN00000018019 // cdna:Genscan chromosome:SGD1:XII:654212:656389:1 // ensembl // 11 // --- /// GENSCAN00000018129 // cdna:Genscan chromosome:SGD1:XII:943269:946793:1 // ensembl // 11 // --- /// GENEFINDER00000024613 // cdna:GeneFinder chromosome:SGD1:XII:943671:946793:1 // ensembl // 11 // --- /// GENSCAN00000019990 // cdna:Genscan chromosome:SGD1:XIV:521256:524705:1 // ensembl // 11 // --- /// GENEFINDER00000020656 // cdna:GeneFinder chromosome:SGD1:XIV:521256:524705:1 // ensembl // 11 // --- /// GENSCAN00000020007 // cdna:Genscan chromosome:SGD1:XIV:562386:565910:-1 // ensembl // 11 // --- /// GENEFINDER00000020560 // cdna:GeneFinder chromosome:SGD1:XIV:562386:565508:-1 // ensembl // 11 // --- /// GENSCAN00000017610 // cdna:Genscan chromosome:SGD1:XV:704419:707943:-1 // ensembl // 11 // --- /// GENEFINDER00000022900 // cdna:GeneFinder chromosome:SGD1:XV:704419:707541:-1 // ensembl // 11 // --- /// GENSCAN00000017796 // cdna:Genscan chromosome:SGD1:XV:972362:975886:1 // ensembl // 11 // --- /// GENEFINDER00000022747 // cdna:GeneFinder chromosome:SGD1:XV:972764:975886:1 // ensembl // 11 // --- /// GENSCAN00000017287 // cdna:Genscan chromosome:SGD1:XVI:804997:808464:-1 // ensembl // 11 // --- /// GENEFINDER00000020842 // cdna:GeneFinder chromosome:SGD1:XVI:804997:808464:-1 // ensembl // 11 // --- /// YBL101W-B // cdna:known chromosome:SGD1:II:29932:35245:1 gene:YBL101W-B // ensembl // 11 // --- /// YCL019W // cdna:known chromosome:SGD1:III:85101:90414:1 gene:YCL019W // ensembl // 11 // --- /// YDR034C-D // cdna:known chromosome:SGD1:IV:514039:519352:-1 gene:YDR034C-D // ensembl // 11 // --- /// YDR098C-B // cdna:known chromosome:SGD1:IV:645853:651121:-1 gene:YDR098C-B // ensembl // 11 // --- /// YDR210W-B // cdna:known chromosome:SGD1:IV:872107:877420:1 gene:YDR210W-B // ensembl // 11 // --- /// YDR210C-D // cdna:known chromosome:SGD1:IV:878654:883922:-1 gene:YDR210C-D // ensembl // 11 // --- /// YDR365W-B // cdna:known chromosome:SGD1:IV:1206987:1212255:1 gene:YDR365W-B // ensembl // 11 // --- /// YFL002W-A // cdna:known chromosome:SGD1:VI:138199:143512:1 gene:YFL002W-A // ensembl // 11 // --- /// YGR038C-B // cdna:known chromosome:SGD1:VII:562203:567471:-1 gene:YGR038C-B // ensembl // 11 // --- /// YGR161W-B // cdna:known chromosome:SGD1:VII:811743:817056:1 gene:YGR161W-B // ensembl // 11 // --- /// YJR027W // cdna:known chromosome:SGD1:X:472674:477942:1 gene:YJR027W // ensembl // 11 // --- /// YLR227W-B // cdna:known chromosome:SGD1:XII:593440:598708:1 gene:YLR227W-B // ensembl // 11 // --- /// YLR410W-B // cdna:known chromosome:SGD1:XII:941480:946793:1 gene:YLR410W-B // ensembl // 11 // --- /// YNL054W-B // cdna:pseudogene chromosome:SGD1:XIV:519455:524705:1 gene:YNL054W-B // ensembl // 11 // --- /// YOR192C-B // cdna:known chromosome:SGD1:XV:704419:709732:-1 gene:YOR192C-B // ensembl // 11 // --- /// YOR343W-B // cdna:known chromosome:SGD1:XV:970573:975886:1 gene:YOR343W-B // ensembl // 11 // --- /// YPR137C-B // cdna:known chromosome:SGD1:XVI:804997:810265:-1 gene:YPR137C-B // ensembl // 11 // --- --- No cerevisiae_gene -1.04218135038574 -3.03377691336081 -1.27125493892263 -2.65447625475829 1.0871648034912 Max fold change at or above threshold 4 3.03377691336081 Max fold change at or above threshold 0.752823213914819 -0.920379679981822 -0.802822260031749 0.970378726098752 527.721000671387 302.750831930205 0.57369487199682 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770773_at YKL015W.S1 Transcriptional activator of proline utilization genes, constitutively binds PUT1 and PUT2 promoter sequences and undergoes a conformational change to form the active state; has a Zn(2)-Cys(6) binuclear cluster domain 3.03264888030936 228.246543884277 133.798007965088 PUT3 6562 // proline catabolism // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from curator 3704 // specific RNA polymerase II transcription factor activity // inferred from direct assay 117.421226501465 252.901153564453 203.591934204102 150.174789428711 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL015W /GEN=PUT3 /DB_XREF=GI:6322837 /SEG=NC_001143:+408187,411126 /DEF=Positive regulator of PUT (proline utilization) genes /NOTE=Put3p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 1986247]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IDA] [pmid 1986247]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IDA] [pmid 1986247]; go_process: proline catabolism [goid GO:0006562] [evidence IMP] [pmid 8846888] --- --- --- --- --- S0001498 // span:394-416,463-485 // numtm:2 S0001498 // PUT3 SGDID:S0001498, Chr XI from 408187-411126, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023007 // cdna:GeneFinder chromosome:SGD1:XI:408187:411126:1 // ensembl // 11 // --- /// GENSCAN00000018407 // cdna:Genscan chromosome:SGD1:XI:408604:411126:1 // ensembl // 11 // --- /// YKL015W // cdna:known chromosome:SGD1:XI:408187:411126:1 gene:YKL015W // ensembl // 11 // --- --- No cerevisiae_gene 3.03264888030936 2.1537941741845 -1.05942123569402 1.73385971404039 1.2789407324649 Max fold change at or above threshold 4 3.03264888030936 Max fold change at or above threshold -1.06632432328746 1.20510897623507 0.378399032875784 -0.517183685823399 181.022275924683 59.6451267538726 0.329490536174062 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773184_at SPAC17H9.19c.S1 --- 3.03220857843568 --- --- --- --- 1.02527844905853 3.10613894462585 2.31480431556702 1.23269212245941 0.828612983226776 0.850341975688934 0.725830018520355 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17H9.19c /GEN=cdt2 /DEF=WD repeat protein --- --- --- --- --- --- L75944 // Schizosaccharomyces pombe WD repeat protein mRNA, complete cds. // gb // 11 // --- /// SPAC17H9.19c // |cdt2|sev1|WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.61836319751777 3.02955645608087 3.03220857843568 2.25773234353321 1.20229984702335 Max fold change at or above threshold 1 3.03220857843568 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772198_at YCR102C.S1 Hypothetical protein /// Hypothetical protein 3.03161000841221 764.108505249023 352.464752197266 --- --- --- --- 339.015350341797 500.454681396484 1027.76232910156 365.914154052734 0.00195312988944352 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR102C /GEN=GIT1 /DB_XREF=GI:6319945 /SEG=NC_001135:-304357,305463 /DEF=Hypothetical ORF /NOTE=Ycr102cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000699 // YCR102C SGDID:S0000699, Chr III from 305463-304357, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022530 // cdna:Genscan chromosome:SGD1:III:304357:305463:-1 // ensembl // 11 // --- /// GENEFINDER00000023333 // cdna:GeneFinder chromosome:SGD1:III:304357:305463:-1 // ensembl // 11 // --- /// YCR102C // cdna:known chromosome:SGD1:III:304357:305463:-1 gene:YCR102C // ensembl // 11 // --- --- No cerevisiae_gene 1.14684402667962 1.4762006525425 1.76426103320279 3.03161000841221 1.07934391078108 Max fold change at or above threshold 4 3.03161000841221 Max fold change at or above threshold -0.683402064059438 -0.180244637890423 1.46321335394583 -0.599566651995967 558.286628723145 320.852525786748 0.574709314676887 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777292_at YGR136W.S1 Protein containing an N-terminal SH3 domain; binds Las17p, which is a homolog of human Wiskott-Aldrich Syndrome protein involved in actin patch assembly and actin polymerization 3.03149222088561 2071.69598388672 815.196441650391 LSB1 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 795.418640136719 1732.08654785156 2411.30541992188 834.974243164063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR136W /GEN=LSB1 /DB_XREF=GI:6321575 /SEG=NC_001139:+762431,763156 /DEF=LAs17 Binding protein /NOTE=Lsb1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003368 // LSB1 SGDID:S0003368, Chr VII from 762433-763158, Verified ORF // sgd // 11 // --- /// GENSCAN00000019446 // cdna:Genscan chromosome:SGD1:VII:762433:763158:1 // ensembl // 11 // --- /// GENEFINDER00000021435 // cdna:GeneFinder chromosome:SGD1:VII:762433:763158:1 // ensembl // 11 // --- /// YGR136W // cdna:known chromosome:SGD1:VII:762433:763158:1 gene:YGR136W // ensembl // 11 // --- YGR137W // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 1.49157924113609 2.1775785233721 1.30839166156837 3.03149222088561 1.04972928849209 Max fold change at or above threshold 4 3.03149222088561 Max fold change at or above threshold -0.834229851995403 0.371577374459964 1.2459609393729 -0.783308461837461 1443.44621276855 776.79739112885 0.538154719072586 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770876_at YDL148C.S1 Nucleolar protein, forms a complex with Noc4p that mediates maturation and nuclear export of 40S ribosomal subunits; also present in the small subunit processome complex, which is required for processing of pre-18S rRNA 3.03126998832913 212.164291381836 309.262474060059 NOP14 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5730 // nucleolus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 5739 // mitochondrion // inferred from direct assay /// 30692 // Noc4p-Nop14p complex // inferred from physical interaction 30515 // snoRNA binding // inferred from physical interaction 245.54753112793 227.615585327148 196.712997436523 372.977416992188 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL148C /GEN=NOP14 /DB_XREF=GI:6320053 /SEG=NC_001136:-188155,190587 /DEF=Nucleolar protein, forms a complex with Noc4p that mediates maturation and nuclear export of 40S ribosomal subunits; also present in the small subunit processome complex, which is required for processing of pre-18S rRNA /NOTE=Nop14p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 10684247]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10684247]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: snoRNA binding [goid GO:0030515] [evidence IPI] [pmid 12068309]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP,IPI] [pmid 12068309] --- --- --- --- --- --- S0002307 // NOP14 SGDID:S0002307, Chr IV from 190587-188155, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023760 // cdna:GeneFinder chromosome:SGD1:IV:188155:190587:-1 // ensembl // 11 // --- /// GENSCAN00000024989 // cdna:Genscan chromosome:SGD1:IV:188155:190587:-1 // ensembl // 11 // --- /// YDL148C // cdna:known chromosome:SGD1:IV:188155:190587:-1 gene:YDL148C // ensembl // 11 // --- --- No cerevisiae_gene 3.03126998832913 -1.07878171336558 -1.13627638762437 -1.24825270484308 1.51896219554277 Max fold change at or above threshold 4 3.03126998832913 Max fold change at or above threshold -0.195655943786738 -0.42699750466551 -0.825674424461864 1.44832787291411 260.713382720947 77.5128590499049 0.297310626101884 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773269_at SPAC24C9.13c.S1 --- 3.03125322338377 --- --- --- --- 0.768086135387421 0.837102830410004 0.253388971090317 0.680617690086365 0.969726979732513 0.991943001747131 0.997070014476776 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24C9.13c /GEN=mrp10 /DEF=mitochondrial ribosomal protein small subunit mrp10 --- --- --- --- --- --- SPAC24C9.13c // |mrp10||mitochondrial ribosomal protein small subunit Mrp10|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.79301046602962 1.08985541053644 -1.40646741484149 -3.03125322338377 -1.12851332925237 Max fold change at or above threshold 0 3.03125322338377 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776667_at YBL080C.S1 Protein required for mitochondrial translation; mutation is functionally complemented by a Bacillus subtilis ortholog 3.03034907509198 105.446929931641 322.238708496094 PET112 6412 // protein biosynthesis // inferred from mutant phenotype /// 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from mutant phenotype 5739 // mitochondrion // inferred from genetic interaction /// 5739 // mitochondrion // inferred from direct assay --- 319.222717285156 105.551963806152 105.341896057129 325.254699707031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL080C /GEN=PET112 /DB_XREF=GI:6319391 /SEG=NC_001134:-73067,74692 /DEF=Protein required for mitochondrial translation; mutation is functionally complemented by a Bacillus subtilis ortholog /NOTE=Pet112p; go_component: mitochondrion [goid GO:0005739] [evidence IGI] [pmid 9287027]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 8082172]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence IMP] [pmid 8082172]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP] [pmid 8082172] --- --- --- --- --- --- S0000176 // PET112 SGDID:S0000176, Chr II from 74692-73067, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021077 // cdna:Genscan chromosome:SGD1:II:73067:74692:-1 // ensembl // 11 // --- /// GENEFINDER00000022176 // cdna:GeneFinder chromosome:SGD1:II:73067:74434:-1 // ensembl // 11 // --- /// YBL080C // cdna:known chromosome:SGD1:II:73067:74692:-1 gene:YBL080C // ensembl // 11 // --- --- No cerevisiae_gene -1.94363737934708 -3.02431812515979 1.15673408672226 -3.03034907509198 1.01889584323188 Max fold change at or above threshold 4 3.03034907509198 Max fold change at or above threshold 0.84176614225063 -0.865018635109198 -0.866696639377024 0.889949132235593 213.842819213867 125.189043348233 0.585425518651762 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770802_at YGL094C.S1 Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex, which acts to control poly(A) tail length and regulate the stoichiometry and activity of postreplication repair complexes 3.02928385554269 260.119682312012 577.320526123047 PAN2 6301 // postreplication repair // inferred from genetic interaction /// 6301 // postreplication repair // inferred from physical interaction /// 6397 // mRNA processing // inferred from mutant phenotype /// 6397 // mRNA processing // inferred from physical interaction /// 31124 // mRNA 3'-end processing // inferred from mutant phenotype /// 31124 // mRNA 3'-end processing // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay /// 31251 // PAN complex // inferred from direct assay 4535 // poly(A)-specific ribonuclease activity // traceable author statement /// 4535 // poly(A)-specific ribonuclease activity // inferred from direct assay 551.554260253906 234.647659301758 285.591705322266 603.086791992188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL094C /GEN=PAN2 /DB_XREF=GI:6321344 /SEG=NC_001139:-331119,334466 /DEF=Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex, which acts to control poly(A) tail length and regulate the stoichiometry and activity of postreplication repair complexes /NOTE=Pan2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: poly(A)-specific ribonuclease activity [goid GO:0004535] [evidence TAS] [pmid 11953437]; go_function: poly(A)-specific ribonuclease activity [goid GO:0004535] [evidence IDA] [pmid 8816488]; go_process: mRNA processing [goid GO:0006397] [evidence IMP,IPI] [pmid 8550599]; go_process: postreplication repair [goid GO:0006301] [evidence IGI,IPI] [pmid 11953437] --- --- --- --- --- --- S0003062 // PAN2 SGDID:S0003062, Chr VII from 334468-331121, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000019281 // cdna:Genscan chromosome:SGD1:VII:331121:334468:-1 // ensembl // 10 // --- /// GENEFINDER00000021722 // cdna:GeneFinder chromosome:SGD1:VII:331121:332884:-1 // ensembl // 10 // --- /// YGL094C // cdna:known chromosome:SGD1:VII:331121:334468:-1 gene:YGL094C // ensembl // 10 // --- --- No cerevisiae_gene -3.02928385554269 -2.35056365742223 -1.14376871650647 -1.93126848565691 1.0934314816362 Max fold change at or above threshold 4 3.02928385554269 Max fold change at or above threshold 0.716048688289599 -0.992251064523664 -0.717634818088072 0.993837194322138 418.720104217529 185.509949545014 0.443040464683873 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772927_at SPCC11E10.07c.S1 --- 3.02858195005929 --- --- --- --- 1.27256190776825 0.696824371814728 0.420184075832367 0.805085003376007 0.601073980331421 0.828612983226776 0.780517995357513 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC11E10.07c /DEF=translation initiation factor --- --- --- --- --- --- SPCC11E10.07c // |||translation initiation factor eIF2B subunit|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.42820667999255 -1.82623048108111 1.04723690056687 -3.02858195005929 -1.58065533755063 Max fold change at or above threshold 0 3.02858195005929 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771917_at SPAC31G5.17c.S1 --- 3.02833973479519 --- --- --- --- 5.06362390518188 7.76177883148193 9.82640552520752 15.3343734741211 0.533936023712158 0.432372987270355 0.334473013877869 0.296630859375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31G5.17c /GEN=rps1001 /DEF=40S ribosomal protein S10 --- --- --- --- --- --- SPAC31G5.17c // |rps1001|rps10-1|40S ribosomal protein S10|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.59220831270637 1.53285057832571 1.06603216121306 1.94058755334329 3.02833973479519 Max fold change at or above threshold 4 3.02833973479519 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779221_at SPBC18H10.18c.S1 --- 3.02826106548309 --- --- --- --- 0.302826106548309 0.208087980747223 0.0538267269730568 0.0199046973139048 0.865966796875 0.969726979732513 0.398925989866257 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18H10.18c /DEF=sequence orphan --- --- --- --- --- --- SPBC18H10.18c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -2.24799183293218 -1.45527918268461 1.44345634621566 -3.02826106548309 -3.02826106548309 Max fold change at or above threshold 0 3.02826106548309 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773989_at YJL091C.S1 Protein involved in the inositol acylation of glucosaminyl phosphatidylinositol (GlcN-PI) to form glucosaminyl(acyl)phosphatidylinositol (GlcN(acyl)PI), an intermediate in the biosynthesis of glycosylphosphatidylinositol (GPI) anchors 3.02766690893875 538.033386230469 205.596946716309 GWT1 6506 // GPI anchor biosynthesis // inferred from direct assay 16020 // membrane // inferred from sequence similarity /// 42175 // nuclear envelope-endoplasmic reticulum network // inferred from direct assay --- 195.30729675293 484.741333007813 591.325439453125 215.886596679688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL091C /GEN=GWT1 /DB_XREF=GI:37362667 /SEG=NC_001142:-260996,262468 /DEF=Protein involved in the inositol acylation of glucosaminyl phosphatidylinositol (GlcN-PI) to form glucosaminyl(acyl)phosphatidylinositol (GlcN(acyl)PI), an intermediate in the biosynthesis of glycosylphosphatidylinositol (GPI) anchors /NOTE=Gwt1p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 7483841]; go_component: nuclear envelope-endoplasmic reticulum network [goid GO:0042175] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: GPI anchor biosynthesis [goid GO:0006506] [evidence IDA] [pmid 12714589] --- --- --- --- --- S0003627 // span:13-35,50-72,77-94,127-149,156-178,198-220,233-252,302-324,355-377,392-411,431-453,463-482 // numtm:12 S0003627 // GWT1 SGDID:S0003627, Chr X from 262468-260996, reverse complement, Verified ORF // sgd // 11 // --- /// YJL091C // cdna:known chromosome:SGD1:X:260996:262468:-1 gene:YJL091C // ensembl // 11 // --- --- No cerevisiae_gene 2.03072894363826 2.48194174547931 1.07764253719572 3.02766690893875 1.10536882271629 Max fold change at or above threshold 4 3.02766690893875 Max fold change at or above threshold -0.896060518921712 0.573281404080913 1.11436668192971 -0.79158756708891 371.815166473389 196.982085465458 0.529784966368648 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776971_at SPAC57A10.02.S1 --- 3.02764525570199 --- --- --- --- 8.3363208770752 9.20748901367188 6.86900043487549 6.10316324234009 0.111571997404099 0.018554700538516 0.0805663987994194 0.111571997404099 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC57A10.02 /GEN=cdr2 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPAC57A10.02 // |cdr2||serine/threonine protein kinase Cdr2|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.10989055019376 1.10450271162095 -3.02764525570199 -1.21361484194262 -1.36590167197934 Max fold change at or above threshold 4 3.02764525570199 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1769657_at YOR264W.S1 Daughter cell-specific protein, may help establish daughter fate 3.02524069948891 526.254699707031 286.767547607422 DSE3 --- 5935 // bud neck // inferred from direct assay --- 262.569641113281 397.02197265625 655.487426757813 310.965454101563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR264W /GEN=DSE3 /DB_XREF=GI:6324837 /SEG=NC_001147:+818863,820155 /DEF=Daughter cell-specific protein, may help establish daughter fate /NOTE=Dse3p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005790 // DSE3 SGDID:S0005790, Chr XV from 818863-820155, Verified ORF // sgd // 11 // --- /// YOR264W // cdna:known chromosome:SGD1:XV:818863:820155:1 gene:YOR264W // ensembl // 11 // --- --- No cerevisiae_gene 3.02524069948891 1.51206350807694 1.00105684852489 2.49643265679376 1.18431610289402 Max fold change at or above threshold 4 3.02524069948891 Max fold change at or above threshold -0.82228843808204 -0.0542082728162498 1.42231642871621 -0.545819717817923 406.511123657227 175.049867999706 0.430615197992243 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779745_at YLR435W.S1 Protein with a potential role in pre-rRNA processing 3.02431167677574 53.1722793579102 159.746734619141 TSR2 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 153.25846862793 55.6690711975098 50.6754875183105 166.235000610352 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR435W /GEN=TSR2 /DB_XREF=GI:37362680 /SEG=NC_001144:+1006374,1006991 /DEF=Twenty S rRNA accumulation /NOTE=Tsr2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP] [pmid 12837249] --- --- --- --- --- --- S0004427 // TSR2 SGDID:S0004427, Chr XII from 1006374-1006991, Verified ORF // sgd // 11 // --- /// GENSCAN00000018150 // cdna:Genscan chromosome:SGD1:XII:1006242:1006991:1 // ensembl // 11 // --- /// GENEFINDER00000024796 // cdna:GeneFinder chromosome:SGD1:XII:1006374:1006991:1 // ensembl // 11 // --- /// YLR435W // cdna:known chromosome:SGD1:XII:1006374:1006991:1 gene:YLR435W // ensembl // 11 // --- --- No cerevisiae_gene 1.64471487155398 -2.75302722555187 1.15883337496703 -3.02431167677574 1.08467089680979 Max fold change at or above threshold 4 3.02431167677574 Max fold change at or above threshold 0.757362003406525 -0.821957258388943 -0.902769960358639 0.967365215341057 106.459506988525 61.7920643350315 0.580427864856557 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771914_at YKL072W.S1 Protein that binds Sin3p in a two-hybrid assay 3.02327339653631 94.458797454834 314.979721069336 STB6 --- --- --- 284.763397216797 94.7271728515625 94.1904220581055 345.196044921875 0.000244141003349796 0.00585938012227416 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL072W /GEN=STB6 /DB_XREF=GI:6322778 /SEG=NC_001143:+299227,301527 /DEF=binds Sin3p in two-hybrid assay /NOTE=Stb6p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001555 // STB6 SGDID:S0001555, Chr XI from 299227-301527, Verified ORF // sgd // 11 // --- /// GENSCAN00000018363 // cdna:Genscan chromosome:SGD1:XI:299227:301527:1 // ensembl // 11 // --- /// GENEFINDER00000023175 // cdna:GeneFinder chromosome:SGD1:XI:299227:301527:1 // ensembl // 11 // --- /// YKL072W // cdna:known chromosome:SGD1:XI:299227:301527:1 gene:YKL072W // ensembl // 11 // --- --- No cerevisiae_gene -1.39655866944538 -3.00614267949304 1.15934591823689 -3.02327339653631 1.21222056028173 Max fold change at or above threshold 4 3.02327339653631 Max fold change at or above threshold 0.617213124047125 -0.848139051885479 -0.852277888813823 1.08320381665218 204.719259262085 129.686383578261 0.63348404075766 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1772592_at SPCC1442.10c.S1 --- 3.02320629179077 --- --- --- --- 0.960621297359467 2.12631320953369 0.317749172449112 0.384371489286423 0.601073980331421 0.567627012729645 0.753906011581421 0.822998046875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1442.10c /GEN=rpb3 /DEF=DNA-directed RNA polymerase (II subunit) (subunit 3) (PMID 8367291) --- --- --- --- --- --- SPCC1442.10c // |rpb3||DNA-directed RNA polymerase II |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.79647742249567 2.21347706466477 -1.03286131125835 -3.02320629179077 -2.49920018558827 Max fold change at or above threshold 0 3.02320629179077 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779980_at SPAC144.09c.S1 --- 3.02303819850524 --- --- --- --- 7.19203042984009 11.7256183624268 3.74122762680054 3.72901582717896 0.171387001872063 0.111571997404099 0.398925989866257 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC144.09c /GEN=sfc2 /DEF=zinc finger protein (PMID 12888341) --- --- --- --- --- --- AY091590 // Schizosaccharomyces pombe transcription factor IIIA (Sfc2) mRNA, complete cds. // gb // 10 // --- /// SPAC144.09c // |sfc2||transcription factor TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -3.02303819850524 1.63036272952581 -2.70508997608194 -1.92237178468359 -1.92866717738791 Max fold change at or above threshold 4 3.02303819850524 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771643_at YGR223C.S1 Phosphatidylinositol 3,5-bisphosphate-binding protein, predicted to fold as a seven-bladed beta-propeller; displays punctate cytoplasmic localization 3.02291065914085 401.23112487793 1105.58056640625 HSV2 --- 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 35091 // phosphoinositide binding // inferred from direct assay 1042.96423339844 345.019866943359 457.4423828125 1168.19689941406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR223C /GEN=HSV2 /DB_XREF=GI:6321662 /SEG=NC_001139:-940870,942216 /DEF=Phosphatidylinositol 3,5-bisphosphate-binding protein, predicted to fold as a seven-bladed beta-propeller; displays punctate cytoplasmic localization /NOTE=Hsv2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 15103325]; go_function: phosphoinositide binding [goid GO:0035091] [evidence IDA] [pmid 15103325]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003455 // HSV2 SGDID:S0003455, Chr VII from 942218-940872, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019514 // cdna:Genscan chromosome:SGD1:VII:940872:942218:-1 // ensembl // 11 // --- /// YGR223C // cdna:known chromosome:SGD1:VII:940872:942218:-1 gene:YGR223C // ensembl // 11 // --- --- No cerevisiae_gene -1.11063147615248 -3.02291065914085 1.09319422380457 -2.27999038258319 1.12007378777272 Max fold change at or above threshold 4 3.02291065914085 Max fold change at or above threshold 0.702097000989886 -0.990220221601619 -0.717627492214414 1.00575071282615 753.40584564209 412.419348534604 0.547406621438037 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776983_at YNL172W.S1 Largest subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition 3.02255024411287 201.175247192383 595.653900146484 APC1 22 // mitotic spindle elongation // traceable author statement /// 70 // mitotic sister chromatid segregation // traceable author statement /// 7091 // mitotic metaphase/anaphase transition // traceable author statement /// 8054 // cyclin catabolism // traceable author statement /// 16567 // protein ubiquitination // inferred from physical interaction /// 31145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from direct assay /// 31145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from physical interaction 5680 // anaphase-promoting complex // traceable author statement 4842 // ubiquitin-protein ligase activity // traceable author statement /// 5515 // protein binding // traceable author statement 564.931640625 186.905624389648 215.444869995117 626.376159667969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL172W /GEN=APC1 /DB_XREF=GI:6324157 /SEG=NC_001146:+310636,315882 /DEF=anaphase-promoting complex component /NOTE=Apc1p; go_component: anaphase-promoting complex [goid GO:0005680] [evidence TAS] [pmid 10465783]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 10465783]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 10465783]; go_process: cyclin catabolism [goid GO:0008054] [evidence TAS] [pmid 10465783]; go_process: mitotic metaphase/anaphase transition [goid GO:0007091] [evidence TAS] [pmid 10465783]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence TAS] [pmid 10465783]; go_process: mitotic spindle elongation [goid GO:0000022] [evidence TAS] [pmid 10465783]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10465783] --- --- --- --- scop // a.2.10.Epsilon subunit of F1F0-ATP synthase C-terminal domain // All alpha proteins; Long alpha-hairpin; Epsilon subunit of F1F0-ATP synthase C-terminal domain; Epsilon subunit of F1F0-ATP synthase C-terminal domain // 1.60000002384186 --- S0005116 // APC1 SGDID:S0005116, Chr XIV from 310636-315882, Verified ORF // sgd // 11 // --- /// GENSCAN00000019902 // cdna:Genscan chromosome:SGD1:XIV:310636:315882:1 // ensembl // 11 // --- /// GENEFINDER00000020694 // cdna:GeneFinder chromosome:SGD1:XIV:312619:315882:1 // ensembl // 11 // --- /// YNL172W // cdna:known chromosome:SGD1:XIV:310636:315882:1 gene:YNL172W // ensembl // 11 // --- YNL171C // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene -2.93164587633172 -3.02255024411287 1.17010179519093 -2.62216334340105 1.10876452056215 Max fold change at or above threshold 4 3.02255024411287 Max fold change at or above threshold 0.725799742276529 -0.92190634679754 -0.797512028041354 0.993618632562365 398.414573669434 229.42563527685 0.575846493675719 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773185_at SPAP8A3.14c.S1 --- 3.02242776885808 --- --- --- --- 7.62906217575073 3.93416666984558 8.08583450317383 7.42181158065796 0.129638999700546 0.398925989866257 0.24609400331974 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP8A3.14c /DEF=localization mitochondrial inner membrane (predicted) --- --- --- --- --- --- SPAP8A3.14c // |||mitochondrial inner membrane protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.02242776885808 -1.93918123353177 1.13812182943219 1.05987267070322 -1.02792452932016 Max fold change at or above threshold 4 3.02242776885808 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777787_at YLR144C.S1 Intracellular beta-1,3-endoglucanase, expression is induced during sporulation; may have a role in cortical actin cytoskeleton assembly 3.02221782307434 258.512153625488 643.783355712891 ACF2 30036 // actin cytoskeleton organization and biogenesis // inferred from direct assay 5622 // intracellular // traceable author statement 4338 // glucan 1,3-beta-glucosidase activity // traceable author statement 628.967956542969 208.114700317383 308.909606933594 658.598754882813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR144C /GEN=ACF2 /DB_XREF=GI:6323173 /SEG=NC_001144:-429678,432017 /DEF=Intracellular beta-1,3-endoglucanase, expression is induced during sporulation; may have a role in in cortical actin cytoskeleton assembly /NOTE=Acf2p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 12455695]; go_function: glucan 1,3-beta-glucosidase activity [goid GO:0004338] [evidence TAS] [pmid 12455695]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence IDA] [pmid 9214384] --- --- --- --- --- --- S0004134 // ACF2 SGDID:S0004134, Chr XII from 432017-429678, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017932 // cdna:Genscan chromosome:SGD1:XII:429678:432017:-1 // ensembl // 10 // --- /// GENEFINDER00000024806 // cdna:GeneFinder chromosome:SGD1:XII:429678:431072:-1 // ensembl // 10 // --- /// YLR144C // cdna:known chromosome:SGD1:XII:429678:432017:-1 gene:YLR144C // ensembl // 10 // --- --- No cerevisiae_gene -2.85797178099085 -3.02221782307434 1.08228986849213 -2.03609063112815 1.04711018746123 Max fold change at or above threshold 4 3.02221782307434 Max fold change at or above threshold 0.784960990203578 -1.0728334856554 -0.627889273067571 0.915761768519397 451.147754669189 226.533807530565 0.502127751243436 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
RPTR-Sc-AF298789-1_s_at AFFX-Sc-AF298789-1 Phosphoribosylanthranilate isomerase that catalyzes the third step in tryptophan biosynthesis; in 2004, the sequence of TRP1 from strain S228C was updated by changing the previously annotated internal STOP (TAA) to serine (TCA) 3.02179247370336 TRP1 162 // tryptophan biosynthesis // traceable author statement /// 6520 // amino acid metabolism // traceable author statement 5737 // cytoplasm // traceable author statement 4640 // phosphoribosylanthranilate isomerase activity // traceable author statement 531.578552246094 1088.63940429688 1606.32006835938 534.577941894531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL AF298789 /FEA=CDS_1 /DB_XREF=AAG34533.1 GI:11344896 /PROD=phosphoribosylanthranilate isomerase /GEN=TRP1 --- --- --- --- --- --- S0002414 // TRP1 SGDID:S0002414, Chr IV from 461839-462513, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023484 // cdna:GeneFinder chromosome:SGD1:IV:461839:462513:1 // ensembl // 11 // --- /// GENSCAN00000025105 // cdna:Genscan chromosome:SGD1:IV:461839:462513:1 // ensembl // 11 // --- /// YDR007W // cdna:known chromosome:SGD1:IV:461839:462513:1 gene:YDR007W // ensembl // 11 // --- YDR008C // ensembl // 1 // Negative Strand Matching Probes No No 1.02889998063009 2.04793703526415 1.11631627636539 3.02179247370336 1.00564242036434 Max fold change at or above threshold 4 3.02179247370336 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775808_at YPR079W.S1 Membrane protein with similarity to mammalian mannose-6-phosphate receptors, possibly functions as a sorting receptor in the delivery of vacuolar hydrolases 3.02041523546057 246.451591491699 632.709991455078 MRL1 7034 // vacuolar transport // inferred from genetic interaction /// 7034 // vacuolar transport // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay /// 5770 // late endosome // inferred from direct assay 5048 // signal sequence binding // inferred from genetic interaction /// 5048 // signal sequence binding // inferred from sequence similarity 594.22314453125 196.735580444336 296.167602539063 671.196838378906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR079W /GEN=MRL1 /DB_XREF=GI:6325336 /SEG=NC_001148:+698865,700010 /DEF=Mannose 6-phosphate Receptor Like /NOTE=Mrl1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: late endosome [goid GO:0005770] [evidence IDA] [pmid 11470415]; go_function: receptor activity [goid GO:0004872] [evidence IGI,ISS] [pmid 11470415]; go_process: vacuolar transport [goid GO:0007034] [evidence IGI,ISS] [pmid 11470415] --- --- --- --- --- S0006283 // span:7-25,239-261 // numtm:2 S0006283 // MRL1 SGDID:S0006283, Chr XVI from 698867-700012, Verified ORF // sgd // 11 // --- /// GENSCAN00000017244 // cdna:Genscan chromosome:SGD1:XVI:698867:700012:1 // ensembl // 11 // --- /// YPR079W // cdna:known chromosome:SGD1:XVI:698867:700012:1 gene:YPR079W // ensembl // 11 // --- --- No cerevisiae_gene -1.35944229051195 -3.02041523546057 -1.11971734927537 -2.00637456439171 1.12953668088505 Max fold change at or above threshold 4 3.02041523546057 Max fold change at or above threshold 0.675770241603357 -1.06120712524284 -0.626700017290838 1.01213690093032 439.580791473389 228.838654822904 0.520583836377113 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773517_at SPAC2C4.07c.S1 --- 3.01949503280434 --- --- --- --- 12.3736820220947 7.4169397354126 9.06930923461914 4.77535247802734 0.0561522990465164 0.0561522990465164 0.0375977009534836 0.111571997404099 M M P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2C4.07c /DEF=ribonuclease II (RNB) family --- --- --- --- --- --- SPAC2C4.07c // |||ribonuclease II |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.01949503280434 -1.66830019704972 -2.60244867635064 -1.36434668859478 -2.59115574798495 Max fold change at or above threshold 4 3.01949503280434 Max fold change at or above threshold MPMAPA No 4 0 MMPA 1 1 2 No No x = 1
1778965_at SPCC338.07c.S1 --- 3.01857171013523 --- --- --- --- 3.62955284118652 1.2024073600769 3.42406511306763 3.29443335533142 0.398925989866257 0.805419981479645 0.366210997104645 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC338.07c /DEF=N-acetyltransferase complex (predicted) --- --- --- --- --- --- SPCC338.07c // |||N-acetyltransferase complex|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.23173622282936 -3.01857171013523 -1.48082887401954 -1.06001279804367 -1.10172295193429 Max fold change at or above threshold 3 3.01857171013523 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772415_at SPAP8A3.04c.S1 --- 3.01792677812629 --- --- --- --- 12.3123121261597 9.77541637420654 6.7525053024292 6.23659420013428 0.0676269978284836 0.149657994508743 0.466064006090164 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP8A3.04c /GEN=hsp9 /DEF=heat shock protein (PMID 8679693) --- --- --- --- --- --- U34953 // Schizosaccharomyces pombe heat shock protein Hsp9p (HSP9) mRNA, complete cds. // gb // 11 // --- /// SPAP8A3.04c // |hsp9|scf1|heat shock protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.01792677812629 -1.25951792280143 -2.33141778279201 -1.82336948654159 -1.97420446658123 Max fold change at or above threshold 4 3.01792677812629 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770852_at YER093C.S1 Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p), a membrane-associated complex that regulates actin cytoskeletal dynamics during polarized growth and cell wall integrity; involved in sphingolipid metabolism; contains a RasGEFN domain 3.01755217660044 221.092956542969 677.86865234375 TSC11 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from genetic interaction /// 30148 // sphingolipid biosynthesis // inferred from genetic interaction --- 5515 // protein binding // inferred from physical interaction 624.326416015625 206.898300170898 235.287612915039 731.410888671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER093C /GEN=TSC11 /DB_XREF=GI:6320939 /SEG=NC_001137:-343316,347608 /DEF=Binding Protein of TOR /NOTE=Tsc11p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12631735]; go_process: sphingolipid biosynthesis [goid GO:0030148] [evidence IGI] [pmid 9804843] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 4.19999980926514 --- S0000895 // TSC11 SGDID:S0000895, Chr V from 347608-343316, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016880 // cdna:Genscan chromosome:SGD1:V:343316:347608:-1 // ensembl // 11 // --- /// YER093C // cdna:known chromosome:SGD1:V:343316:347608:-1 gene:YER093C // ensembl // 11 // --- --- No cerevisiae_gene -2.39872345908912 -3.01755217660044 -1.09946430350696 -2.65346062328009 1.17152000925998 Max fold change at or above threshold 4 3.01755217660044 Max fold change at or above threshold 0.653458307757744 -0.906614420047946 -0.800513774470553 1.05366988676075 449.480804443359 267.569651340459 0.595286047135693 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774631_at YMR182W-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 3.01661367255978 951.921051025391 354.220260620117 --- --- --- --- 342.439544677734 1033.0078125 870.834289550781 366.0009765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR182W-A /GEN=RGM1 /DB_XREF=GI:33438856 /SEG=NC_001145:+625810,625896 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ymr182w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028693 // span:5-27 // numtm:1 S0028693 // YMR182W-A SGDID:S0028693, Chr XIII from 625810-625896, Uncharacterized ORF // sgd // 11 // --- /// YMR182W-A // cdna:known chromosome:SGD1:XIII:625810:625896:1 gene:YMR182W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.78343398782593 3.01661367255978 1.09717941951825 2.54303074246379 1.06880464669155 Max fold change at or above threshold 4 3.01661367255978 Max fold change at or above threshold -0.883709564745803 1.08087724413817 0.619512338187588 -0.816680017579958 653.070655822754 351.508146496493 0.538239076220098 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772148_at YKR031C.S1 Phospholipase D, catalyzes the hydrolysis of phosphatidylcholine, producing choline and phosphatidic acid; involved in Sec14p-independent secretion; required for meiosis and spore formation; differently regulated in secretion and meiosis 3.01611051526303 751.054748535156 1333.92810058594 SPO14 6644 // phospholipid metabolism // inferred from direct assay /// 6644 // phospholipid metabolism // inferred from mutant phenotype /// 6887 // exocytosis // inferred from genetic interaction /// 30437 // sporulation (sensu Fungi) // traceable author statement 5628 // prospore membrane // inferred from direct assay /// 5768 // endosome // inferred from direct assay 4630 // phospholipase D activity // inferred from direct assay 1342.99951171875 795.514465332031 706.595031738281 1324.85668945313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR031C /GEN=SPO14 /DB_XREF=GI:6322883 /SEG=NC_001143:-500986,506037 /DEF=Phospholipase D, catalyzes the hydrolysis of phoshatidylcholine, producing choline and phosphatidic acid; involved in Sec14p-independent secretion; required for meiosis and spore formation; differently regulated in secretion and meiosis /NOTE=Spo14p; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 10848624]; go_component: prospore membrane [goid GO:0005628] [evidence IDA] [pmid 9693364]; go_function: phospholipase D activity [goid GO:0004630] [evidence IDA] [pmid 11514437]; go_process: exocytosis [goid GO:0006887] [evidence IGI] [pmid 11514437]; go_process: phospholipid metabolism [goid GO:0006644] [evidence IDA,IMP] [pmid 8576189]; go_process: sporulation (sensu Fungi) [goid GO:0030437] [evidence TAS] [pmid 11283284] --- --- --- --- --- --- S0001739 // SPO14 SGDID:S0001739, Chr XI from 506037-500986, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018444 // cdna:Genscan chromosome:SGD1:XI:500986:506037:-1 // ensembl // 11 // --- /// GENEFINDER00000023043 // cdna:GeneFinder chromosome:SGD1:XI:500986:504060:-1 // ensembl // 11 // --- /// YKR031C // cdna:known chromosome:SGD1:XI:500986:506037:-1 gene:YKR031C // ensembl // 11 // --- --- No cerevisiae_gene -3.01611051526303 -1.68821507369852 1.2467764518192 -1.9006636777715 -1.01369417719672 Max fold change at or above threshold 4 3.01611051526303 Max fold change at or above threshold 0.887618673720816 -0.729502367350951 -0.992146046796887 0.834029740427022 1042.49142456055 338.555391019998 0.324756044072701 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774778_at YOR100C.S1 Mitochondrial inner membrane carnitine transporter, required for carnitine-dependent transport of acetyl-CoA from peroxisomes to mitochondria during fatty acid beta-oxidation 3.01505041284844 1141.18170166016 451.789566040039 CRC1 6631 // fatty acid metabolism // inferred from direct assay 5739 // mitochondrion // inferred from direct assay /// 5743 // mitochondrial inner membrane // inferred from direct assay 5476 // carnitine:acyl carnitine antiporter activity // inferred from direct assay 431.117401123047 982.522705078125 1299.84069824219 472.461730957031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR100C /GEN=CRC1 /DB_XREF=GI:6324674 /SEG=NC_001147:-513295,514278 /DEF=Mitochondrial inner membrane carnitine transporter, required for carnitine-dependent transport of acetyl-CoA from peroxisomes to mitochondria during fatty acid beta-oxidation /NOTE=Crc1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 10545096]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11914276]; go_function: carnitine/acyl carnitine carrier activity [goid GO:0005476] [evidence IDA] [pmid 10545096]; go_process: fatty acid metabolism [goid GO:0006631] [evidence IDA] [pmid 10545096] --- --- --- --- --- S0005626 // span:97-119,139-161,238-260 // numtm:3 S0005626 // CRC1 SGDID:S0005626, Chr XV from 514278-513295, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017536 // cdna:Genscan chromosome:SGD1:XV:513295:514278:-1 // ensembl // 10 // --- /// GENEFINDER00000022623 // cdna:GeneFinder chromosome:SGD1:XV:513295:514278:-1 // ensembl // 10 // --- /// YOR100C // cdna:known chromosome:SGD1:XV:513295:514278:-1 gene:YOR100C // ensembl // 10 // --- --- No cerevisiae_gene 1.2841556029279 2.2790142604281 2.26887074299269 3.01505041284844 1.09590039679745 Max fold change at or above threshold 4 3.01505041284844 Max fold change at or above threshold -0.872183936436923 0.444095930004054 1.20157737362712 -0.773489367194255 796.485633850098 418.911903169951 0.525950356624752 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778368_at YDR451C.S1 One of two homeobox transcriptional repressors (see also Yox1p), that bind to Mcm1p and to early cell cycle box (ECB) elements of cell cycle regulated genes, thereby restricting ECB-mediated transcription to the M/G1 interval 3.01482733189111 20.5374279022217 68.7799377441406 YHP1 83 // G1/S-specific transcription in mitotic cell cycle // inferred from physical interaction /// 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from expression pattern /// 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from physical interaction /// 7346 // regulation of mitotic cell cycle // inferred from mutant phenotype /// 40020 // regulation of meiosis // inferred from expression pattern /// 40020 // regulation of meiosis // inferred from physical interaction 228 // nuclear chromosome // inferred from direct assay 3677 // DNA binding // inferred from direct assay /// 16566 // specific transcriptional repressor activity // inferred from direct assay /// 16566 // specific transcriptional repressor activity // inferred from genetic interaction /// 16566 // specific transcriptional repressor activity // inferred from physical interaction 59.3576965332031 21.386266708374 19.6885890960693 78.2021789550781 0.00195312988944352 0.111571997404099 0.0676269978284836 0.000732421991415322 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR451C /GEN=YHP1 /DB_XREF=GI:6320659 /SEG=NC_001136:-1361108,1362169 /DEF=acts as a repressor at early cell cycle boxes (ECBs) to restrict their activity to the M/G1 phase of the cell cycle. /NOTE=Yhp1p; go_component: nuclear chromosome [goid GO:0000228] [evidence IDA] [pmid 10705372]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IEP,IPI] [pmid 10705372]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IEP,IPI] [pmid 10705372]; go_process: regulation of meiosis [goid GO:0040020] [evidence IEP,IPI] [pmid 10705372] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 4.00000004674439E-7 --- S0002859 // YHP1 SGDID:S0002859, Chr IV from 1362171-1361110, reverse complement, Verified ORF // sgd // 9 // --- /// GENSCAN00000025452 // cdna:Genscan chromosome:SGD1:IV:1361110:1362171:-1 // ensembl // 9 // --- /// YDR451C // cdna:known chromosome:SGD1:IV:1361110:1362171:-1 gene:YDR451C // ensembl // 9 // --- --- No cerevisiae_gene 1.40023588288733 -2.77550529704939 -1.51450061065653 -3.01482733189111 1.31747327680302 Max fold change at or above threshold 4 3.01482733189111 Max fold change at or above threshold 0.508544541282195 -0.805160156396321 -0.863895027975215 1.16051064308934 44.6586828231812 28.9040831565339 0.647222025579549 PPAPAP Called_P_>2EXP 2 0 PAAP 2 2 0 Yes No 1 < x = 2
1774033_at YPR185W.S1 Phosphorylated protein that interacts with Vac8p, required for the cytoplasm-to-vacuole targeting (Cvt) pathway and autophagy 3.01451177264795 480.535034179688 866.055358886719 ATG13 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6914 // autophagy // inferred from mutant phenotype 19898 // extrinsic to membrane // inferred from direct assay 5515 // protein binding // inferred from physical interaction 841.22265625 460.493072509766 500.576995849609 890.888061523438 0.000732421991415322 0.00415039015933871 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR185W /GEN=ATG13 /DB_XREF=GI:6325443 /SEG=NC_001148:+907212,909428 /DEF=Phosphorylated protein that interacts with Vac8p, required for the cytoplasm-to-vacuole targeting (Cvt) pathway and autophagy /NOTE=Atg13p; go_component: extrinsic to membrane [goid GO:0019898] [evidence IDA] [pmid 10837477]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 10888680]; go_process: autophagy [goid GO:0006914] [evidence IMP] [pmid 9224892]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 8663607] --- --- --- --- --- --- S0006389 // ATG13 SGDID:S0006389, Chr XVI from 907214-909430, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020746 // cdna:GeneFinder chromosome:SGD1:XVI:907214:909622:1 // ensembl // 11 // --- /// YPR185W // cdna:known chromosome:SGD1:XVI:907214:909430:1 gene:YPR185W // ensembl // 11 // --- --- No cerevisiae_gene -3.01451177264795 -1.82678677806203 1.01853998144906 -1.68050602249955 1.05903954785863 Max fold change at or above threshold 4 3.01451177264795 Max fold change at or above threshold 0.749341190629809 -0.949585000887886 -0.770718870885991 0.970962681144068 673.295196533203 224.10013197814 0.332840829894572 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779114_at YGR152C.S1 GTP-binding protein of the ras superfamily required for bud site selection, morphological changes in response to mating pheromone, and efficient cell fusion; localized to the plasma membrane; significantly similar to mammalian Rap GTPases 3.01447872386698 138.444702148438 432.348602294922 RSR1 282 // bud site selection // traceable author statement /// 7120 // axial bud site selection // traceable author statement /// 7121 // bipolar bud site selection // traceable author statement /// 7264 // small GTPase mediated signal transduction // traceable author statement 5886 // plasma membrane // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 3924 // GTPase activity // inferred from direct assay /// 3924 // GTPase activity // traceable author statement /// 4871 // signal transducer activity // traceable author statement 388.104614257813 148.142562866211 128.746841430664 476.592590332031 0.000244141003349796 0.00292969006113708 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR152C /GEN=RSR1 /DB_XREF=GI:6321591 /SEG=NC_001139:-794677,795495 /DEF=Gtp-binding protein of the ras superfamily involved in bud site selection /NOTE=Rsr1p; go_component: bud [goid GO:0005933] [evidence TAS] [pmid 9759491]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 8723349]; go_function: GTPase activity [goid GO:0003924] [evidence IDA] [pmid 1910037]; go_function: GTPase activity [goid GO:0003924] [evidence TAS] [pmid 9759491]; go_function: signal transducer activity [goid GO:0004871] [evidence TAS] [pmid 9891811]; go_process: axial budding [goid GO:0007120] [evidence TAS] [pmid 2065354]; go_process: bud site selection [goid GO:0000282] [evidence TAS] [pmid 9759491]; go_process: polar budding [goid GO:0007121] [evidence TAS] [pmid 2065354]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence TAS] [pmid 9891811] --- --- --- --- --- --- S0003384 // RSR1 SGDID:S0003384, Chr VII from 795497-794679, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019457 // cdna:Genscan chromosome:SGD1:VII:794679:795497:-1 // ensembl // 11 // --- /// YGR152C // cdna:known chromosome:SGD1:VII:794679:795497:-1 gene:YGR152C // ensembl // 11 // --- YGR151C // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 2.06062428424903 -2.61980491459645 -1.26602194585958 -3.01447872386698 1.22800031956187 Max fold change at or above threshold 4 3.01447872386698 Max fold change at or above threshold 0.591401005225415 -0.790320485451427 -0.902002665943132 1.10092214616914 285.39665222168 173.668899999561 0.608517649550652 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774075_at SPAC1952.08c.S1 --- 3.01388255717083 --- --- --- --- 16.4744815826416 18.3648242950439 19.3795490264893 13.9619045257568 0.24609400331974 0.334473013877869 0.111571997404099 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1952.08c /DEF=pyridoxamine 5-phosphate oxidase (predicted) --- --- --- --- --- --- SPAC1952.08c // |||pyridoxamine 5'-phosphate oxidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -3.01388255717083 1.11474368421973 1.00007421237916 1.17633741184964 -1.17995947846868 Max fold change at or above threshold 4 3.01388255717083 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1769953_at SPAC4C5.01.S1 --- 3.01364512971595 --- --- --- --- 3.24742412567139 8.8873405456543 8.40153217315674 9.56545829772949 0.432372987270355 0.129638999700546 0.194580003619194 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4C5.01 /DEF=haloacid dehalogenase (predicted) --- --- --- --- --- --- SPAC4C5.01 // |||haloacid dehalogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.53200500062992 2.73673539449267 3.01364512971595 2.58713732731778 2.94555251410282 Max fold change at or above threshold 4 3.01364512971595 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1778443_at SPBC19C2.08.S1 --- 3.0125193121453 --- --- --- --- 1.12305700778961 3.38323092460632 1.0366462469101 2.19852876663208 0.753906011581421 0.5 0.665526986122131 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C2.08 /DEF=U4U6 x U5 tri-snRNP complex (predicted) --- --- --- --- --- --- SPBC19C2.08 // |||U4/U6 x U5 tri-snRNP complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.86917079312329 3.0125193121453 -1.66980079393164 -1.08335607362403 1.95762882149607 Max fold change at or above threshold 1 3.0125193121453 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775026_at SPAC1687.11.S1 --- 3.01099343401186 --- --- --- --- 0.428122073411942 0.509555637836456 1.2890727519989 0.243480578064919 0.59228515625 0.932372987270355 0.901123046875 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.11 /GEN=pmt2 /DEF=rRNA methyltransferase (predicted) --- --- --- --- --- --- SPAC1687.11 // |pmt2||rRNA methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.3330406879471 1.19021108576702 -1.43762902279928 3.01099343401186 -1.75834178156827 Max fold change at or above threshold 0 3.01099343401186 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777282_at YCR009C.S1 Amphiphysin-like lipid raft protein; subunit of a complex (Rvs161p-Rvs167p) that regulates polarization of the actin cytoskeleton, endocytosis, cell polarity, cell fusion and viability following starvation or osmotic stress 3.01061322579978 2621.09533691406 1060.71331787109 RVS161 6897 // endocytosis // inferred from mutant phenotype /// 6970 // response to osmotic stress // inferred from mutant phenotype /// 7121 // bipolar bud site selection // inferred from mutant phenotype 5937 // mating projection // inferred from direct assay /// 30479 // actin cortical patch // traceable author statement /// 45121 // lipid raft // inferred from direct assay 8092 // cytoskeletal protein binding // inferred from sequence similarity /// 8092 // cytoskeletal protein binding // inferred from physical interaction 985.823608398438 2274.25708007813 2967.93359375 1135.60302734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR009C /GEN=RVS161 /DB_XREF=GI:6319854 /SEG=NC_001135:-130742,131539 /DEF=Protein required for viability after N, C, or S starvation. The BAR adaptor proteins encoded by RVS167 and RVS161 form a complex that regulates actin, endocytosis, and viability following starvation or osmotic stress. /NOTE=Rvs161p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10652251]; go_component: lipid raft [goid GO:0045121] [evidence IDA] [pmid 12477802]; go_function: cytoskeletal protein binding [goid GO:0008092] [evidence IPI,ISS] [pmid 10388809]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 10652251]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251]; go_process: response to osmotic stress [goid GO:0006970] [evidence IMP] [pmid 10652251] --- --- --- --- --- --- S0000602 // RVS161 SGDID:S0000602, Chr III from 131539-130742, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022467 // cdna:Genscan chromosome:SGD1:III:130742:131539:-1 // ensembl // 11 // --- /// GENEFINDER00000023403 // cdna:GeneFinder chromosome:SGD1:III:130742:131539:-1 // ensembl // 11 // --- /// YCR009C // cdna:known chromosome:SGD1:III:130742:131539:-1 gene:YCR009C // ensembl // 11 // --- --- No cerevisiae_gene -1.07012338821273 2.3069614692763 1.55272133629739 3.01061322579978 1.15193328468634 Max fold change at or above threshold 4 3.01061322579978 Max fold change at or above threshold -0.903578796127352 0.457931455910613 1.19095159681938 -0.745304256602637 1840.90432739258 946.326676388302 0.514055327214457 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773521_at YGR112W.S1 Mitochondrial inner membrane protein required for normal respiration, possible chaperone involved in assembly of cytochrome c oxidase; similar to SURF1 from mammals, chickens, and D. melanogaster 3.00999182116078 197.153785705566 563.837524414063 SHY1 9060 // aerobic respiration // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay /// 16021 // integral to membrane // inferred from direct assay 51082 // unfolded protein binding // inferred from mutant phenotype 517.30615234375 171.862976074219 222.444595336914 610.368896484375 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR112W /GEN=SHY1 /DB_XREF=GI:6321550 /SEG=NC_001139:+717360,718529 /DEF=Mitochondrial inner membrane protein required for normal respiration, possible chaperone involved in assembly of cytochrome c oxidase; similar to SURF1 from mammals, chickens, and D. melanogaster /NOTE=Shy1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 9162072]; go_function: chaperone activity [goid GO:0003754] [evidence IMP] [pmid 11389896]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 9162072] --- --- --- --- --- S0003344 // span:72-90,341-363 // numtm:2 S0003344 // SHY1 SGDID:S0003344, Chr VII from 717362-718531, Verified ORF // sgd // 11 // --- /// GENSCAN00000019428 // cdna:Genscan chromosome:SGD1:VII:717362:718531:1 // ensembl // 11 // --- /// GENEFINDER00000021443 // cdna:GeneFinder chromosome:SGD1:VII:717362:718531:1 // ensembl // 11 // --- /// YGR112W // cdna:known chromosome:SGD1:VII:717362:718531:1 gene:YGR112W // ensembl // 11 // --- --- No cerevisiae_gene -1.4452350334203 -3.00999182116078 1.52117622184488 -2.32555055590467 1.17989877699886 Max fold change at or above threshold 4 3.00999182116078 Max fold change at or above threshold 0.633159067349274 -0.965552169370056 -0.731460403656222 1.063853505677 380.495655059814 216.076029451326 0.567880412241129 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-TagB_at AFFX-r2-TagB --- 3.00948742197971 --- --- --- --- 0.706265091896057 1.28249478340149 2.12549591064453 0.978065371513367 0.725830018520355 0.828612983226776 0.567627012729645 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Clone 76A7, synthetic insert (467 bp)+ poly A tail (21 bp), target sequence 1-467 --- --- --- --- --- --- AFFX-r2-TagB // --- // unknown // --- // --- /// AFFX-r2-TagB // --- // unknown // --- // --- /// AFFX-r2-TagB // --- // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-TagB // --- // unknown // --- // --- /// AFFX-r2-TagB // --- // affx // --- // --- /// AFFX-r2-TagB // --- // affx // --- // --- /// AFFX-r2-TagB // --- // affx // --- // --- /// AFFX-r2-TagB // --- // affx // --- // --- /// AFFX-r2-TagB // --- // affx // --- // --- /// AFFX-r2-TagB // --- // affx // --- // --- /// AFFX-r2-TagB // --- // affx // --- // --- /// AFFX-r2-TagB // --- // affx // --- // --- /// AFFX-r2-TagB // --- // affx // --- // --- /// AFFX-r2-TagB // --- // affx // --- // --- /// AFFX-r2-TagB // --- // affx // --- // --- /// AFFX-r2-TagB // --- // affx // --- // --- --- AFFX_control No 1.88687621960101 1.81588301349918 -1.51261376122693 3.00948742197971 1.38484172973582 Max fold change at or above threshold 0 3.00948742197971 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773555_at SPAC13G7.10.S1 --- 3.00860710870462 --- --- --- --- 4.25142574310303 12.7908697128296 8.49937152862549 2.70873594284058 0.533936023712158 0.24609400331974 0.334473013877869 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G7.10 /DEF=transcription factor (predicted) --- --- --- --- --- --- D89142 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0555. // gb // 10 // --- /// SPAC13G7.10 // |||transcription factor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.18337552310707 3.00860710870462 -2.00098434606969 1.99918146104605 -1.56952387859729 Max fold change at or above threshold 4 3.00860710870462 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778753_at YMR001C-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 3.0072951291195 90.5644283294678 96.800407409668 --- --- --- --- 87.3605117797852 128.825698852539 52.3031578063965 106.240303039551 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR001C-A /GEN=CDC5 /DB_XREF=GI:33438852 /SEG=NC_001145:-271347,271577 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ymr001c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028691 // YMR001C-A SGDID:S0028691, Chr XIII from 271577-271347, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YMR001C-A // cdna:known chromosome:SGD1:XIII:271347:271577:-1 gene:YMR001C-A // ensembl // 11 // --- --- No cerevisiae_gene 3.0072951291195 1.47464450731788 -1.34011306298446 -1.67027222530532 1.21611356063661 Max fold change at or above threshold 4 3.0072951291195 Max fold change at or above threshold -0.195254513212543 1.08541381722067 -1.27801444152857 0.387855137520446 93.6824178695679 32.3777718925301 0.345612043634581 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776953_at YPL246C.S1 Possible rhomboid protease, has similarity to eukaryotic rhomboid proteases including Pcp1p 3.00651236385399 971.402191162109 2233.74829101563 RBD2 --- 5794 // Golgi apparatus // inferred from direct assay /// 30137 // COPI-coated vesicle // inferred from direct assay --- 2330.599609375 775.183776855469 1167.62060546875 2136.89697265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL246C /GEN=RBD2 /DB_XREF=GI:6325010 /SEG=NC_001148:-84509,85297 /DEF=homologous to RBD1 /NOTE=Rbd2p; go_component: COPI-coated vesicle [goid GO:0030137] [evidence IDA] [pmid 14562095]; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0006167 // span:15-37,57-79,89-111,118-136,156-178 // numtm:5 S0006167 // RBD2 SGDID:S0006167, Chr XVI from 85297-84509, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020971 // cdna:GeneFinder chromosome:SGD1:XVI:84509:85141:-1 // ensembl // 11 // --- /// YPL246C // cdna:known chromosome:SGD1:XVI:84509:85297:-1 gene:YPL246C // ensembl // 11 // --- --- No cerevisiae_gene -1.40624210279843 -3.00651236385399 -1.09267906300614 -1.99602473479762 -1.0906466896614 Max fold change at or above threshold 4 3.00651236385399 Max fold change at or above threshold 0.970187216823275 -1.10260680394209 -0.579633657551983 0.712053244670803 1602.57524108887 750.395754202919 0.468243696123163 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779032_at YGL154C.S1 Phosphopantetheinyl transferase involved in lysine biosynthesis; converts inactive apo-form of Lys2p (alpha-aminoadipate reductase) into catalytically active holo-form by posttranslational addition of phosphopantetheine 3.00612383393329 434.349990844727 201.860801696777 LYS5 18065 // protein-cofactor linkage // inferred from direct assay /// 19878 // lysine biosynthesis, aminoadipic pathway // traceable author statement 5737 // cytoplasm // traceable author statement 8897 // phosphopantetheinyltransferase activity // inferred from direct assay 167.781463623047 364.328125 504.371856689453 235.940139770508 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL154C /GEN=LYS5 /DB_XREF=GI:6321284 /SEG=NC_001139:-215281,216099 /DEF=Converts inactive apo-form of Lys2p (alpha-aminoadipate semialdehyde reductase) into catalytically active holo-form by posttranslational addition of phosphopantetheine. (Has been called small subunit of alpha-aminoadipate reductase.) /NOTE=Lys5p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 3928261]; go_function: holo-[acyl-carrier protein] synthase activity [goid GO:0008897] [evidence IDA] [pmid 10320345]; go_function: holo-[acyl-carrier protein] synthase activity [goid GO:0008897] [evidence IMP] [pmid 11286508]; go_process: lysine biosynthesis, aminoadipic pathway [goid GO:0019878] [evidence TAS] [pmid 3928261]; go_process: protein-cofactor linkage [goid GO:0018065] [evidence IDA] [pmid 11286508] --- --- --- --- --- --- S0003122 // LYS5 SGDID:S0003122, Chr VII from 216101-215283, reverse complement, Verified ORF // sgd // 11 // --- /// YGL154C // cdna:known chromosome:SGD1:VII:215283:216101:-1 gene:YGL154C // ensembl // 11 // --- --- No cerevisiae_gene 1.43106348775879 2.17144443213663 1.59569545476124 3.00612383393329 1.40623484070083 Max fold change at or above threshold 4 3.00612383393329 Max fold change at or above threshold -1.01210340474958 0.311209135496245 1.25409783698403 -0.553203567730697 318.105396270752 148.526259216468 0.466908958344268 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780085_at YER015W.S1 Long chain fatty acyl-CoA synthetase; accepts a wider range of acyl chain lengths than Faa1p, preferring C9:0-C13:0; involved in the activation of endogenous pools of fatty acids 3.00598939749795 540.554412841797 379.881195068359 FAA2 6499 // N-terminal protein myristoylation // inferred from genetic interaction /// 6499 // N-terminal protein myristoylation // inferred from mutant phenotype /// 6629 // lipid metabolism // inferred from genetic interaction /// 6629 // lipid metabolism // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5777 // peroxisome // inferred from direct assay 4467 // long-chain-fatty-acid-CoA ligase activity // inferred from direct assay 399.924377441406 509.816650390625 571.292175292969 359.838012695313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER015W /GEN=FAA2 /DB_XREF=GI:6320852 /SEG=NC_001137:+184540,186774 /DEF=Long chain fatty acyl-CoA synthetase; accepts a wider range of acyl chain lengths than Faa1p, preferring C9:0-C13:0; involved in the activation of endogenous pools of fatty acids /NOTE=Faa2p; go_component: peroxisome [goid GO:0005777] [evidence IDA] [pmid 8670886]; go_function: long-chain-fatty-acid-CoA ligase activity [goid GO:0004467] [evidence IDA] [pmid 8206942]; go_process: N-terminal protein myristoylation [goid GO:0006499] [evidence IGI,IMP] [pmid 7962057]; go_process: lipid metabolism [goid GO:0006629] [evidence IGI,IMP] [pmid 7962057] --- --- --- ec // AC2L_HUMAN // (Q9NUB1) Acetyl-coenzyme A synthetase 2-like, mitochondrial precursor (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acetyl-CoA synthetase 2) // 0.021 --- --- S0000817 // FAA2 SGDID:S0000817, Chr V from 184540-186774, Verified ORF // sgd // 11 // --- /// GENSCAN00000016817 // cdna:Genscan chromosome:SGD1:V:184540:186774:1 // ensembl // 11 // --- /// GENEFINDER00000019695 // cdna:GeneFinder chromosome:SGD1:V:184540:186774:1 // ensembl // 11 // --- /// YER015W // cdna:known chromosome:SGD1:V:184540:186774:1 gene:YER015W // ensembl // 11 // --- --- No cerevisiae_gene -3.00598939749795 1.27478263178723 1.84161663253902 1.42850050539035 -1.11140113976796 Max fold change at or above threshold 4 3.00598939749795 Max fold change at or above threshold -0.618500273286325 0.508793443147837 1.13941988372504 -1.02971305358655 460.217803955078 97.4832657604341 0.211819849042497 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779077_at YER113C.S1 Hypothetical protein 3.00586236338382 118.665100097656 407.732971191406 --- --- 5794 // Golgi apparatus // inferred from direct assay /// 30137 // COPI-coated vesicle // inferred from direct assay --- 339.395416259766 112.911163330078 124.419036865234 476.070526123047 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER113C /GEN=LSM4 /DB_XREF=GI:6320959 /SEG=NC_001137:-387928,390048 /DEF=Hypothetical ORF /NOTE=Yer113cp; go_component: COPI-coated vesicle [goid GO:0030137] [evidence IDA] [pmid 14562095]; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000915 // span:7-26,291-313,371-393,406-428,457-479,494-516,553-575,595-617,638-660,675-697 // numtm:10 S0000915 // YER113C SGDID:S0000915, Chr V from 390048-387928, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016895 // cdna:Genscan chromosome:SGD1:V:387928:390048:-1 // ensembl // 11 // --- /// YER113C // cdna:known chromosome:SGD1:V:387928:390048:-1 gene:YER113C // ensembl // 11 // --- --- No cerevisiae_gene -1.34640577394813 -3.00586236338382 -1.05756669802541 -2.72784153302348 1.40270169635607 Max fold change at or above threshold 4 3.00586236338382 Max fold change at or above threshold 0.432844343966847 -0.853731567994146 -0.788359460676725 1.20924668470402 263.199035644531 176.036447460361 0.668833937895239 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778279_at YBR265W.S1 3-ketosphinganine reductase, catalyzes the second step in phytosphingosine synthesis, essential for growth in the absence of exogenous dihydrosphingosine or phytosphingosine, member of short chain dehydrogenase/reductase protein family 3.00323839499812 760.996063232422 1808.23883056641 TSC10 6666 // 3-keto-sphinganine metabolism // inferred from direct assay /// 30148 // sphingolipid biosynthesis // inferred from mutant phenotype /// 30148 // sphingolipid biosynthesis // inferred from sequence similarity /// 30148 // sphingolipid biosynthesis // inferred from direct assay 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay 16651 // oxidoreductase activity, acting on NADH or NADPH // inferred from direct assay 1703.69604492188 567.286315917969 954.705810546875 1912.78161621094 0.000244141003349796 0.00415039015933871 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR265W /GEN=TSC10 /DB_XREF=GI:6319742 /SEG=NC_001134:+738539,739501 /DEF=catalyzes the second step in the synthesis of phytosphingosine /NOTE=Tsc10p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: oxidoreductase activity, acting on NADH or NADPH [goid GO:0016651] [evidence IDA] [pmid 9804843]; go_process: 3-keto-sphinganine metabolism [goid GO:0006666] [evidence IDA] [pmid 9804843]; go_process: sphingolipid biosynthesis [goid GO:0030148] [evidence IDA,IMP,ISS] [pmid 9804843] --- --- --- --- --- S0000469 // span:285-307 // numtm:1 S0000469 // TSC10 SGDID:S0000469, Chr II from 738577-739539, Verified ORF // sgd // 11 // --- /// GENSCAN00000021351 // cdna:Genscan chromosome:SGD1:II:738577:739539:1 // ensembl // 11 // --- /// GENEFINDER00000022122 // cdna:GeneFinder chromosome:SGD1:II:738577:739539:1 // ensembl // 11 // --- /// YBR265W // cdna:known chromosome:SGD1:II:738577:739539:1 gene:YBR265W // ensembl // 11 // --- --- No cerevisiae_gene -1.15017501902649 -3.00323839499812 1.1212691157595 -1.78452464214705 1.1227246913628 Max fold change at or above threshold 4 3.00323839499812 Max fold change at or above threshold 0.664389207032821 -1.1372259608141 -0.523027736327915 0.995864490109194 1284.61744689941 630.772736200933 0.491019904582008 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770003_at YDR239C.S1 Hypothetical protein 3.00311525045879 376.198120117188 510.084411621094 --- --- 5737 // cytoplasm // inferred from direct assay --- 517.702270507813 368.091186523438 384.305053710938 502.466552734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR239C /GEN=SEC26 /DB_XREF=GI:6320445 /SEG=NC_001136:-941049,943412 /DEF=Hypothetical ORF /NOTE=Ydr239cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002647 // YDR239C SGDID:S0002647, Chr IV from 943414-941051, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENEFINDER00000023564 // cdna:GeneFinder chromosome:SGD1:IV:941051:943414:-1 // ensembl // 10 // --- /// GENSCAN00000025283 // cdna:Genscan chromosome:SGD1:IV:941051:943414:-1 // ensembl // 10 // --- /// YDR239C // cdna:known chromosome:SGD1:IV:941051:943414:-1 gene:YDR239C // ensembl // 10 // --- --- No cerevisiae_gene -3.00311525045879 -1.40645114434124 1.17257959588467 -1.34711283525616 -1.03032185463993 Max fold change at or above threshold 4 3.00311525045879 Max fold change at or above threshold 0.95798453771429 -0.964268331895895 -0.755947184166591 0.762230978348196 443.141265869141 77.8311149119079 0.17563499702348 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776798_at SPAC10F6.15.S1 --- 3.00079602655547 --- --- --- --- 9.15667819976807 3.05141639709473 12.8059206008911 7.48264455795288 0.0952147990465164 0.567627012729645 0.149657994508743 0.1884765625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC10F6.15 /GEN=B8647-4 /DEF=Pfam-B_8647 domain --- --- --- --- --- --- SPAC10F6.15 // |B8647-4||Pfam-B_8647 domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.75302082680045 -3.00079602655547 -2.351096324331 1.39853343335965 -1.22372219191355 Max fold change at or above threshold 4 3.00079602655547 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777052_at SPBP8B7.25.S1 --- 3.00068239396826 --- --- --- --- 9.09797191619873 14.5066652297974 8.14520454406738 4.72266244888306 0.0952147990465164 0.030273400247097 0.0461426004767418 0.171387001872063 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.25 /GEN=cyp4 /DEF=cyclophilin --- --- --- --- --- --- SPBP8B7.25 // |cyp4||cyclophilin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -3.00068239396826 1.59449439539032 -1.66855313379021 -1.11697279877708 -1.92644975470361 Max fold change at or above threshold 4 3.00068239396826 Max fold change at or above threshold AAPPPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1772729_at YPR032W.S1 Protein with roles in exocytosis and cation homeostasis; functions in docking and fusion of post-Golgi vesicles with plasma membrane; homolog of Sro77p and Drosophila lethal giant larvae tumor suppressor; interacts with SNARE protein Sec9p 3.00060951887371 298.205993652344 809.203674316406 SRO7 6887 // exocytosis // inferred from genetic interaction /// 6893 // Golgi to plasma membrane transport // inferred from genetic interaction /// 6893 // Golgi to plasma membrane transport // inferred from physical interaction 5829 // cytosol // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay --- 781.674987792969 260.505401611328 335.906585693359 836.732360839844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR032W /GEN=SRO7 /DB_XREF=GI:6325289 /SEG=NC_001148:+634118,637219 /DEF=Suppressor of rho3 /NOTE=Sro7p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 10402465]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 10402465]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi to plasma membrane transport [goid GO:0006893] [evidence IGI,IPI] [pmid 10402465]; go_process: exocytosis [goid GO:0006887] [evidence IGI] [pmid 10402465] --- --- --- --- --- --- S0006236 // SRO7 SGDID:S0006236, Chr XVI from 634120-637221, Verified ORF // sgd // 11 // --- /// GENSCAN00000017211 // cdna:Genscan chromosome:SGD1:XVI:634120:637221:1 // ensembl // 11 // --- /// GENEFINDER00000020986 // cdna:GeneFinder chromosome:SGD1:XVI:634345:637221:1 // ensembl // 11 // --- /// YPR032W // cdna:known chromosome:SGD1:XVI:634120:637221:1 gene:YPR032W // ensembl // 11 // --- --- No cerevisiae_gene -1.63321507675986 -3.00060951887371 1.05524182431073 -2.32706062067667 1.07043512189424 Max fold change at or above threshold 4 3.00060951887371 Max fold change at or above threshold 0.7663465469557 -0.985621884332762 -0.732152576652462 0.951427914029524 553.704833984375 297.476585122229 0.537247585471908 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773975_at YJL095W.S1 Mitogen-activated protein (MAP) kinase kinase kinase acting in the protein kinase C signaling pathway, which controls cell integrity; upon activation by Pkc1p phosphorylates downstream kinases Mkk1p and Mkk2p 3.00047548794869 276.473281860352 756.455871582031 BCK1 6468 // protein amino acid phosphorylation // traceable author statement /// 7243 // protein kinase cascade // inferred from mutant phenotype /// 7584 // response to nutrients // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype 5622 // intracellular // traceable author statement 4709 // MAP kinase kinase kinase activity // inferred from genetic interaction /// 4709 // MAP kinase kinase kinase activity // traceable author statement 742.377868652344 247.420074462891 305.526489257813 770.533874511719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL095W /GEN=BCK1 /DB_XREF=GI:6322366 /SEG=NC_001142:+247171,251607 /DEF=bypass requirement for protein kinase C homolog /NOTE=Bck1p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 10361272]; go_function: MAP kinase kinase kinase activity [goid GO:0004709] [evidence IGI,TAS] [pmid 11283616]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IMP] [pmid 1545797]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 8190082]; go_process: protein kinase cascade [goid GO:0007243] [evidence IMP] [pmid 8190082]; go_process: response to nutrients [goid GO:0007584] [evidence IMP] [pmid 8190082] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 5.0E-69 /// hanks // 2.1.20 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; PhKgT // 5.0E-73 scop // a.4.5.Replication initiation protein // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Replication initiation protein // 3.90000009536743 --- S0003631 // BCK1 SGDID:S0003631, Chr X from 247171-251607, Verified ORF // sgd // 10 // --- /// GENSCAN00000024065 // cdna:Genscan chromosome:SGD1:X:247171:251607:1 // ensembl // 10 // --- /// GENEFINDER00000024477 // cdna:GeneFinder chromosome:SGD1:X:248974:251607:1 // ensembl // 10 // --- /// YJL095W // cdna:known chromosome:SGD1:X:247171:251607:1 gene:YJL095W // ensembl // 10 // --- --- No cerevisiae_gene -1.9276000932174 -3.00047548794869 -1.20080660479623 -2.42983143771178 1.03792678506229 Max fold change at or above threshold 4 3.00047548794869 Max fold change at or above threshold 0.811560623268856 -0.96650321932517 -0.757764380615066 0.91270697667138 516.464576721191 278.368966474993 0.53898946611641 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778826_at SPCC417.12.S1 --- 2.99974458313718 --- --- --- --- 12.7124910354614 18.817590713501 8.62505340576172 4.23785781860352 0.111571997404099 0.030273400247097 0.0239257998764515 0.171387001872063 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC417.12 /DEF=carboxylesterase-lipase family (predicted) --- --- --- --- --- --- SPCC417.12 // |||carboxylesterase-lipase family |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.10209061342155 1.48024416780389 -1.15378572480221 -1.47390287774557 -2.99974458313718 Max fold change below threshold 4 2.99974458313718 Max fold change at or above threshold AAPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1773417_at SPAC1006.07.S1 --- 2.99907641175559 --- --- --- --- 29.2675914764404 14.3444442749023 19.4530658721924 11.4552354812622 0.0676269978284836 0.171387001872063 0.171387001872063 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1006.07 /DEF=translation initiation factor --- --- --- --- --- --- X80796 // S.pombe eIF-4A mRNA for translation initiation factor. // gb // 11 // --- /// L40627 // Schizosaccharomyces pombe cell cycle control protein eIF-4A (tif1) mRNA, complete cds. // gb // 11 // --- /// SPAC1006.07 // |||translation initiation factor eIF4A|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.99907641175559 -2.04034334935152 -1.7384447693191 -1.50452333162957 -2.55495328090938 Max fold change below threshold 4 2.99907641175559 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771413_at YOL155W-A.S1 Identified by expression profiling and mass spectrometry 2.99614470752027 74.7680969238281 39.1553287506104 --- --- --- --- 31.4305229187012 94.1703948974609 55.3657989501953 46.8801345825195 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL155W-A /GEN=HXT11 /DB_XREF=GI:33438874 /SEG=NC_001147:+27083,27217 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Yol155w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028855 // YOL155W-A SGDID:S0028855, Chr XV from 27083-27217, Uncharacterized ORF // sgd // 11 // --- /// YOL155W-A // cdna:known chromosome:SGD1:XV:27083:27217:1 gene:YOL155W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.2909557010934 2.99614470752027 1.27260395059157 1.76152967907679 1.49154803131277 Max fold change below threshold 4 2.99614470752027 Max fold change at or above threshold -0.955812629799427 1.39298357674959 -0.0597463202521312 -0.377424626698032 56.9617128372192 26.7115008972791 0.468937810448452 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773412_at YAR007C.S1 Subunit of heterotrimeric Replication Factor A (RF-A), which is a highly conserved single-stranded DNA binding protein involved in DNA replication, repair, and recombination 2.99601889774953 384.763671875 863.615295410156 RFA1 6268 // DNA unwinding // traceable author statement /// 6269 // DNA replication, synthesis of RNA primer // traceable author statement /// 6271 // DNA strand elongation // traceable author statement /// 6289 // nucleotide-excision repair // traceable author statement /// 6301 // postreplication repair // traceable author statement /// 6302 // double-strand break repair // traceable author statement /// 6310 // DNA recombination // traceable author statement 781 // chromosome, telomeric region // inferred from mutant phenotype /// 5634 // nucleus // inferred from direct assay /// 5662 // DNA replication factor A complex // traceable author statement /// 5737 // cytoplasm // inferred from direct assay 3684 // damaged DNA binding // traceable author statement /// 3697 // single-stranded DNA binding // traceable author statement 783.518737792969 261.519958496094 508.007385253906 943.711853027344 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR007C /GEN=RFA1 /DB_XREF=GI:6319321 /SEG=NC_001133:-156758,158623 /DEF=Rfa1p, Rfa2p, and Rfa3p make up RPA, a highly conserved single-stranded DNA-binding protein involved in DNA replication, recombination and repair; binds URS1 and CAR1 /NOTE=Rfa1p; go_component: DNA replication factor A complex [goid GO:0005662] [evidence TAS] [pmid 9242902]; go_component: chromosome, telomeric region [goid GO:0000781] [evidence IMP] [pmid 14702040]; go_function: damaged DNA binding [goid GO:0003684] [evidence TAS] [pmid 9242902]; go_function: single-stranded DNA binding [goid GO:0003697] [evidence TAS] [pmid 9242902]; go_process: DNA recombination [goid GO:0006310] [evidence TAS] [pmid 9242902]; go_process: DNA replication, synthesis of RNA primer [goid GO:0006269] [evidence TAS] [pmid 9242902]; go_process: DNA strand elongation [goid GO:0006271] [evidence TAS] [pmid 9242902]; go_process: DNA unwinding [goid GO:0006268] [evidence TAS] [pmid 9242902]; go_process: double-strand break repair [goid GO:0006302] [evidence TAS] [pmid 9242902]; go_process: nucleotide-excision repair [goid GO:0006289] [evidence TAS] [pmid 9242902]; go_process: postreplication repair [goid GO:0006301] [evidence TAS] [pmid 9242902] --- --- --- --- --- --- S0000065 // RFA1 SGDID:S0000065, Chr I from 158621-156756, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018240 // cdna:GeneFinder chromosome:SGD1:I:156756:158621:-1 // ensembl // 11 // --- /// GENSCAN00000020382 // cdna:Genscan chromosome:SGD1:I:156756:158477:-1 // ensembl // 11 // --- /// YAR007C // cdna:known chromosome:SGD1:I:156756:158621:-1 gene:YAR007C // ensembl // 11 // --- --- No cerevisiae_gene -1.09009025456839 -2.99601889774953 -1.09783901260972 -1.54233729771735 1.20445345785298 Max fold change below threshold 4 2.99601889774953 Max fold change at or above threshold 0.528648087717746 -1.20332296767813 -0.385487551973554 1.06016243193394 624.189483642578 301.390013228345 0.48285019393394 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772690_at YGL023C.S1 Protein binding phosphatidylinositol 3-phosphate, involved in telomere-proximal repression of gene expression; similar to Fab1 and Vps27 2.99597333129416 481.592758178711 1135.86663818359 PIB2 16192 // vesicle-mediated transport // inferred from sequence similarity 5739 // mitochondrion // inferred from direct assay /// 5770 // late endosome // traceable author statement 5545 // phosphatidylinositol binding // inferred from sequence similarity 1082.05810546875 361.170806884766 602.014709472656 1189.67517089844 0.00292969006113708 0.0239257998764515 0.018554700538516 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL023C /GEN=PIB2 /DB_XREF=GI:6321415 /SEG=NC_001139:-450200,452107 /DEF=Phosphatidylinositol 3-phosphate binding /NOTE=Pib2p; go_component: late endosome [goid GO:0005770] [evidence TAS] [pmid 9702203]; go_function: phosphatidylinositol binding [goid GO:0005545] [evidence ISS] [pmid 9702203]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence ISS] [pmid 9702203] --- --- --- --- --- --- S0002991 // PIB2 SGDID:S0002991, Chr VII from 452109-450202, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019322 // cdna:Genscan chromosome:SGD1:VII:450202:452109:-1 // ensembl // 11 // --- /// GENEFINDER00000021694 // cdna:GeneFinder chromosome:SGD1:VII:450202:452109:-1 // ensembl // 11 // --- /// YGL023C // cdna:known chromosome:SGD1:VII:450202:452109:-1 gene:YGL023C // ensembl // 11 // --- --- No cerevisiae_gene -1.53247101706595 -2.99597333129416 -1.00558948213994 -1.79739479524777 1.09945590249339 Max fold change below threshold 4 2.99597333129416 Max fold change at or above threshold 0.695851964026915 -1.13941590124808 -0.52626447544933 0.969828412670491 808.729698181152 392.796774914363 0.485695994344922 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1771025_at SPCC74.06.S1 --- 2.99594749145897 --- --- --- --- 1.28181874752045 0.661045551300049 1.99031758308411 0.523672163486481 0.696289002895355 0.98486328125 0.870360970497131 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC74.06 /GEN=mak3 /DEF=histidine kinase (PMID 11758939) --- --- --- --- --- --- SPCC74.06 // |mak3||histidine kinase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.51482206505571 -1.93907779123474 -2.99594749145897 1.55272934409345 -2.44775039976617 Max fold change below threshold 0 2.99594749145897 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774989_at SPBC1711.11.S1 --- 2.99480530257781 --- --- --- --- 6.31546878814697 6.78007078170776 2.91186213493347 3.56742906570435 0.398925989866257 0.432372987270355 0.665526986122131 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1711.11 /DEF=PX domain --- --- --- --- --- --- SPBC1711.11 // |||PX domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.99480530257781 1.07356571762856 -1.96937121370502 -2.16887630509034 -1.7703137670938 Max fold change below threshold 4 2.99480530257781 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772390_at SPBP8B7.31.S1 --- 2.99386778170589 --- --- --- --- 1.93722558021545 0.675243377685547 2.7229962348938 0.889645099639893 0.432372987270355 0.601073980331421 0.633789002895355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.31 /DEF=acid phosphatase (predicted) (PMID 10889041) --- --- --- --- --- --- SPBP8B7.31 // |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -2.99386778170589 -2.86892940269249 2.17530253911449 1.40561649748139 -2.17752627536486 Max fold change below threshold 1 2.99386778170589 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770790_at YHR149C.S1 Protein of unknown function; found in the bud tip and bud neck, potential Cdc28p substrate; Skg6p interacts with Zds1p and Zds2p 2.99386440629297 32.5061120986938 101.394931793213 SKG6 --- 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay --- 94.2613372802734 33.5273857116699 31.4848384857178 108.528526306152 0.000244141003349796 0.000244141003349796 0.0107421996071935 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR149C /GEN=IMP3 /DB_XREF=GI:6321943 /SEG=NC_001140:-394456,396660 /DEF=Protein of unknown function found in the bud tip and bud neck, potential Cdc28p substrate /NOTE=Yhr149cp --- --- --- --- --- S0001192 // span:74-96 // numtm:1 S0001192 // SKG6 SGDID:S0001192, Chr VIII from 396661-394457, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016677 // cdna:Genscan chromosome:SGD1:VIII:394457:396646:-1 // ensembl // 11 // --- /// GENEFINDER00000020137 // cdna:GeneFinder chromosome:SGD1:VIII:394457:396661:-1 // ensembl // 11 // --- /// YHR149C // cdna:known chromosome:SGD1:VIII:394457:396661:-1 gene:YHR149C // ensembl // 11 // --- --- No cerevisiae_gene 2.43740464403868 -2.81147292815806 -1.63058698585378 -2.99386440629297 1.15135780413827 Max fold change below threshold 4 2.99386440629297 Max fold change at or above threshold 0.679274617281074 -0.831300266797447 -0.882102502768909 1.03412815228528 66.9505219459534 40.2058528900091 0.60053083562912 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1778710_at SPAC4A8.14.S1 --- 2.99371573546673 --- --- --- --- 0.429156243801117 0.624593138694763 1.2847718000412 0.240359097719193 0.888427972793579 0.991943001747131 0.850341975688934 0.999267995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4A8.14 /GEN=prs1 /DEF=ribose-phosphate pyrophosphokinase --- --- --- --- --- --- SPAC4A8.14 // |prs1||ribose-phosphate pyrophosphokinase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.91948038672525 1.45539799948528 -1.80335607383893 2.99371573546673 -1.78547950909057 Max fold change below threshold 0 2.99371573546673 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779841_at YJL173C.S1 Subunit of heterotrimeric Replication Factor A (RF-A), which is a highly conserved single-stranded DNA binding protein involved in DNA replication, repair, and recombination 2.99328494840996 243.004203796387 727.643707275391 RFA3 6268 // DNA unwinding // traceable author statement /// 6269 // DNA replication, synthesis of RNA primer // traceable author statement /// 6271 // DNA strand elongation // traceable author statement /// 6289 // nucleotide-excision repair // traceable author statement /// 6301 // postreplication repair // traceable author statement /// 6302 // double-strand break repair // traceable author statement /// 6310 // DNA recombination // traceable author statement 781 // chromosome, telomeric region // inferred from mutant phenotype /// 5662 // DNA replication factor A complex // traceable author statement 3677 // DNA binding // traceable author statement 702.420471191406 234.665420532227 251.342987060547 752.866943359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL173C /GEN=RFA3 /DB_XREF=GI:6322288 /SEG=NC_001142:-96159,96527 /DEF=Rfa1p, Rfa2p, and Rfa3p make up Replication Protein A (RPA), a highly conserved single-stranded DNA-binding protein involved in DNA replication, recombination and repair /NOTE=Rfa3p; go_component: DNA replication factor A complex [goid GO:0005662] [evidence TAS] [pmid 9242902]; go_component: chromosome, telomeric region [goid GO:0000781] [evidence IMP] [pmid 14702040]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 9242902]; go_process: DNA recombination [goid GO:0006310] [evidence TAS] [pmid 9242902]; go_process: DNA replication, synthesis of RNA primer [goid GO:0006269] [evidence TAS] [pmid 9242902]; go_process: DNA strand elongation [goid GO:0006271] [evidence TAS] [pmid 9242902]; go_process: DNA unwinding [goid GO:0006268] [evidence TAS] [pmid 9242902]; go_process: double-strand break repair [goid GO:0006302] [evidence TAS] [pmid 9242902]; go_process: nucleotide-excision repair [goid GO:0006289] [evidence TAS] [pmid 9242902]; go_process: postreplication repair [goid GO:0006301] [evidence TAS] [pmid 9242902] --- --- --- --- --- --- S0003709 // RFA3 SGDID:S0003709, Chr X from 96527-96159, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024006 // cdna:Genscan chromosome:SGD1:X:96159:96527:-1 // ensembl // 11 // --- /// GENEFINDER00000024467 // cdna:GeneFinder chromosome:SGD1:X:96159:96527:-1 // ensembl // 11 // --- /// YJL173C // cdna:known chromosome:SGD1:X:96159:96527:-1 gene:YJL173C // ensembl // 11 // --- --- No cerevisiae_gene 1.21204180543056 -2.99328494840996 -1.2781493780542 -2.79466906718268 1.07181805519193 Max fold change below threshold 4 2.99328494840996 Max fold change at or above threshold 0.773559313793575 -0.893147657153601 -0.833722074571405 0.953310417931431 485.323955535889 280.646243648551 0.578265796376494 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771190_at YGR177C.S1 Alcohol acetyltransferase, may play a role in steroid detoxification; forms volatile esters during fermentation, which is important in brewing 2.9919174025187 55.1865558624268 126.458637237549 ATF2 8202 // steroid metabolism // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay 4026 // alcohol O-acetyltransferase activity // inferred from direct assay 134.662734985352 46.7838134765625 63.589298248291 118.254539489746 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR177C /GEN=ATF2 /DB_XREF=GI:6321616 /SEG=NC_001139:-848832,850439 /DEF=Alcohol acetyltransferase, may play a role in steroid detoxification; forms volatile esters during fermentation, which is important in brewing /NOTE=Atf2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: alcohol O-acetyltransferase activity [goid GO:0004026] [evidence IDA] [pmid 9836419]; go_process: steroid metabolism [goid GO:0008202] [evidence IMP] [pmid 10103065] --- --- --- --- --- --- S0003409 // ATF2 SGDID:S0003409, Chr VII from 850441-848834, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019479 // cdna:Genscan chromosome:SGD1:VII:848834:850441:-1 // ensembl // 11 // --- /// YGR177C // cdna:known chromosome:SGD1:VII:848834:850441:-1 gene:YGR177C // ensembl // 11 // --- GENEFINDER00000021559 // ensembl // 8 // Cross Hyb Matching Probes /// YGR176W // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene 2.9919174025187 -2.87840440909791 -1.87595664359998 -2.11769493759071 -1.13875319769038 Max fold change below threshold 4 2.9919174025187 Max fold change at or above threshold 1.03760263346667 -1.04230412864741 -0.644554124241316 0.649255619422052 90.8225965499878 42.2513754508238 0.465207746263553 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774670_at YPL108W.S1 Hypothetical protein 2.99069534949379 131.065052032471 326.459838867188 --- --- 5737 // cytoplasm // inferred from direct assay --- 301.043792724609 100.660133361816 161.469970703125 351.875885009766 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL108W /GEN=CAR1 /DB_XREF=GI:6325149 /SEG=NC_001148:+348441,348947 /DEF=Hypothetical ORF /NOTE=Ypl108wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006029 // YPL108W SGDID:S0006029, Chr XVI from 348443-348949, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017107 // cdna:Genscan chromosome:SGD1:XVI:348479:348949:1 // ensembl // 11 // --- /// GENEFINDER00000020839 // cdna:GeneFinder chromosome:SGD1:XVI:348479:348949:1 // ensembl // 11 // --- /// YPL108W // cdna:known chromosome:SGD1:XVI:348443:348949:1 gene:YPL108W // ensembl // 11 // --- --- No cerevisiae_gene -1.30052396151982 -2.99069534949379 1.11842351891911 -1.86439491760423 1.16885281647928 Max fold change below threshold 4 2.99069534949379 Max fold change at or above threshold 0.615895106600647 -1.09153454015327 -0.573385907570144 1.04902534112277 228.762445449829 117.359833679679 0.513020541675482 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771355_at YLR457C.S1 Component of the mitotic apparatus containing a coiled-coil domain, essential for the G2/M transition 2.98925588389536 60.1611309051514 151.034515380859 NBP1 --- 5634 // nucleus // inferred from direct assay --- 139.749160766602 73.57177734375 46.7504844665527 162.319869995117 0.000244141003349796 0.00805663969367743 0.00585938012227416 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR457C /GEN=NBP1 /DB_XREF=GI:6323491 /SEG=NC_001144:-1055809,1056768 /DEF=Nap1p Binding Protein /NOTE=Nbp1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10767562]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004449 // NBP1 SGDID:S0004449, Chr XII from 1056768-1055809, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018167 // cdna:Genscan chromosome:SGD1:XII:1055809:1056768:-1 // ensembl // 10 // --- /// YLR457C // cdna:known chromosome:SGD1:XII:1055809:1056768:-1 gene:YLR457C // ensembl // 10 // --- --- No cerevisiae_gene -1.57988127862625 -1.89949415131906 1.18869934392818 -2.98925588389536 1.16150872824354 Max fold change below threshold 4 2.98925588389536 Max fold change at or above threshold 0.627983518943524 -0.588903110048814 -1.08209989400142 1.04301948510671 105.597823143005 54.3825380657282 0.514996772159602 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-Scv2-TrpnX-M_at AFFX-Scv2-TrpnX-M --- 2.98844711966421 --- --- --- --- 5.13751888275146 3.67383670806885 9.20277118682861 2.57795214653015 0.219482004642487 0.334473013877869 0.149657994508743 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=trpD, trpC /DB_XREF=gb:K01391.1 /NOTE=SIF corresponding to nucleotides 2880-3359 of gb:K01391.1, not 100% identical /DEF=B.subtilis tryptophan (trp) operon, complete cds. --- --- --- --- --- --- AFFX-Scv2-TrpnX-M // --- // affx // --- // --- --- AFFX_control No -2.13458907831146 -1.39840697640914 -2.98844711966421 1.7912870778394 -1.99286821117545 Max fold change below threshold 4 2.98844711966421 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773902_at YEL001C.S1 Hypothetical protein 2.98775955049917 585.843841552734 1686.42279052734 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 1747.16442871094 584.774108886719 586.91357421875 1625.68115234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL001C /GEN=WBP1 /DB_XREF=GI:6320836 /SEG=NC_001137:-150300,150977 /DEF=Hypothetical ORF /NOTE=Yel001cp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000727 // span:177-196 // numtm:1 S0000727 // YEL001C SGDID:S0000727, Chr V from 150977-150300, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016802 // cdna:Genscan chromosome:SGD1:V:150300:150977:-1 // ensembl // 11 // --- /// YEL001C // cdna:known chromosome:SGD1:V:150300:150977:-1 gene:YEL001C // ensembl // 11 // --- --- No cerevisiae_gene -1.62677068860794 -2.98775955049917 -1.43167682416931 -2.97686832518164 -1.07472761567792 Max fold change below threshold 4 2.98775955049917 Max fold change at or above threshold 0.958701688421839 -0.865077067048651 -0.861720267397038 0.76809564602385 1136.13331604004 637.352703192527 0.560984080120106 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778805_at YFL051C.S1 Hypothetical protein 2.98697706559897 12.2499957084656 6.46143364906311 --- --- --- --- 5.30495452880859 15.8457775115967 8.65421390533447 7.61791276931763 0.149657994508743 0.219482004642487 0.171387001872063 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL051C /GEN=DAK2 /DB_XREF=GI:14318468 /SEG=NC_001138:-30058,30540 /DEF=Hypothetical ORF /NOTE=Yfl051cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001843 // span:7-29,133-155 // numtm:2 S0001843 // YFL051C SGDID:S0001843, Chr VI from 30540-30058, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018586 // cdna:GeneFinder chromosome:SGD1:VI:30058:30540:-1 // ensembl // 11 // --- /// GENSCAN00000023198 // cdna:Genscan chromosome:SGD1:VI:30058:30540:-1 // ensembl // 11 // --- /// YFL051C // cdna:known chromosome:SGD1:VI:30058:30540:-1 gene:YFL051C // ensembl // 11 // --- --- No cerevisiae_gene 2.19666443032167 2.98697706559897 1.66360535485977 1.63134553903105 1.43599963542543 Max fold change below threshold 4 2.98697706559897 Max fold change at or above threshold -0.890749421424376 1.4271444122448 -0.154257814565554 -0.382137176254869 9.35571467876434 4.54758661922932 0.486075813059098 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774583_at YBR281C.S1 Hypothetical protein 2.98668787247153 186.430946350098 415.666030883789 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 437.039489746094 226.532745361328 146.329147338867 394.292572021484 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR281C /GEN=PAF1 /DB_XREF=GI:6319758 /SEG=NC_001134:-764928,767564 /DEF=Hypothetical ORF /NOTE=Ybr281cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000485 // YBR281C SGDID:S0000485, Chr II from 767602-764966, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021363 // cdna:Genscan chromosome:SGD1:II:764966:766591:-1 // ensembl // 11 // --- /// GENEFINDER00000022391 // cdna:GeneFinder chromosome:SGD1:II:764966:767602:-1 // ensembl // 11 // --- /// YBR281C // cdna:known chromosome:SGD1:II:764966:767602:-1 gene:YBR281C // ensembl // 11 // --- --- No cerevisiae_gene -1.09080238575009 -1.92925525644868 1.00120578929691 -2.98668787247153 -1.10841421005081 Max fold change below threshold 4 2.98668787247153 Max fold change at or above threshold 0.989374987777783 -0.542124199106095 -1.12562923366236 0.678378444990676 301.048488616943 137.451424191142 0.456575699225771 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771162_at YJL162C.S1 Protein of unknown function, contains a J-domain, which is a region with homology to the E. coli DnaJ protein 2.98665316922478 67.4243049621582 227.213325500488 JJJ2 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 190.023574829102 63.6242523193359 71.2243576049805 264.403076171875 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL162C /GEN=JJJ2 /DB_XREF=GI:6322299 /SEG=NC_001142:-114176,115624 /DEF=Protein that may function as a cochaperone, as suggested by the presence of a DnaJ-like domain /NOTE=Jjj2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 4.9999999188758E-18 --- S0003698 // JJJ2 SGDID:S0003698, Chr X from 115624-114176, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024015 // cdna:Genscan chromosome:SGD1:X:114176:114859:-1 // ensembl // 11 // --- /// GENEFINDER00000024342 // cdna:GeneFinder chromosome:SGD1:X:114176:115225:-1 // ensembl // 11 // --- /// YJL162C // cdna:known chromosome:SGD1:X:114176:115624:-1 gene:YJL162C // ensembl // 11 // --- --- No cerevisiae_gene 1.4323270339751 -2.98665316922478 1.27399273370252 -2.66795772147215 1.39142249276 Max fold change below threshold 4 2.98665316922478 Max fold change at or above threshold 0.439473073571234 -0.861297596580912 -0.783085199161844 1.20490972217152 147.318815231323 97.1726418885054 0.659607815443823 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777587_at YPR159C-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 2.98593915643403 72.6059951782227 31.1588106155396 --- --- --- --- 30.6473274230957 75.019905090332 70.1920852661133 31.6702938079834 0.004150390625 0.00585938012227416 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR159C-A /GEN=KRE6 /DB_XREF=GI:33438896 /SEG=NC_001148:-860308,860409 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ypr159c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028725 // span:10-32 // numtm:1 S0028725 // YPR159C-A SGDID:S0028725, Chr XVI from 860411-860310, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YPR159C-A // cdna:known chromosome:SGD1:XVI:860310:860411:-1 gene:YPR159C-A // ensembl // 11 // --- K00204 // gb // 2 // Negative Strand Matching Probes No cerevisiae_gene 2.98593915643403 2.44784493129399 -1.77952646376834 2.29031668233547 1.03337864900144 Max fold change below threshold 4 2.98593915643403 Max fold change at or above threshold -0.884271398735071 0.963492286763765 0.762452125918892 -0.841673013947586 51.8824028968811 24.0142059374098 0.462858398928423 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1770293_at SPBC2F12.02c.S1 --- 2.98549953000155 --- --- --- --- 1.564826130867 0.858855724334717 4.08367967605591 0.717700958251953 0.633789002895355 0.888427972793579 0.601073980331421 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2F12.02c /GEN=mrpl7 /DEF=mitochondrial ribosomal protein subunit YmL5YmL7 --- --- --- --- --- --- SPBC2F12.02c // |mrpl7||mitochondrial ribosomal protein subunit L7|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.98549953000155 -1.82198952225549 -1.64881081614403 2.6096699150808 -2.18033167278796 Max fold change below threshold 1 2.98549953000155 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776498_at YMR093W.S1 Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA 2.98525857390762 302.772888183594 884.640258789063 UTP15 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction 30515 // snoRNA binding // inferred from physical interaction 869.274536132813 291.189025878906 314.356750488281 900.005981445313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR093W /GEN=UTP15 /DB_XREF=GI:6323740 /SEG=NC_001145:+454014,455555 /DEF=Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA /NOTE=Utp15p; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: snoRNA binding [goid GO:0030515] [evidence IPI] [pmid 12068309]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP,IPI] [pmid 12068309] --- --- --- --- --- --- S0004699 // UTP15 SGDID:S0004699, Chr XIII from 454014-455555, Verified ORF // sgd // 11 // --- /// GENSCAN00000018789 // cdna:Genscan chromosome:SGD1:XIII:454014:455555:1 // ensembl // 11 // --- /// GENEFINDER00000021784 // cdna:GeneFinder chromosome:SGD1:XIII:454014:455555:1 // ensembl // 11 // --- /// YMR093W // cdna:known chromosome:SGD1:XIII:454014:455555:1 gene:YMR093W // ensembl // 11 // --- --- No cerevisiae_gene 1.72932288381973 -2.98525857390762 -1.10608767858254 -2.76524851075281 1.03535298002541 Max fold change below threshold 4 2.98525857390762 Max fold change at or above threshold 0.819390421104266 -0.899523944456021 -0.830635633052215 0.910769156403971 593.706573486328 336.308499036528 0.566455744395211 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771150_at YPL107W.S1 Hypothetical protein 2.98519033916774 239.61572265625 610.678588867188 --- --- 5739 // mitochondrion // inferred from direct assay --- 538.915588378906 180.529724121094 298.701721191406 682.441589355469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL107W /GEN=CAR1 /DB_XREF=GI:6325150 /SEG=NC_001148:+349114,349860 /DEF=Hypothetical ORF /NOTE=Ypl107wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006028 // YPL107W SGDID:S0006028, Chr XVI from 349116-349862, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017108 // cdna:Genscan chromosome:SGD1:XVI:349194:349862:1 // ensembl // 11 // --- /// GENEFINDER00000020787 // cdna:GeneFinder chromosome:SGD1:XVI:349194:349862:1 // ensembl // 11 // --- /// YPL107W // cdna:known chromosome:SGD1:XVI:349116:349862:1 gene:YPL107W // ensembl // 11 // --- --- No cerevisiae_gene -1.43512559471875 -2.98519033916774 1.41720450761434 -1.80419311354946 1.26632371390165 Max fold change below threshold 4 2.98519033916774 Max fold change at or above threshold 0.500563111195924 -1.07627801331148 -0.556339914939412 1.13205481705497 425.147155761719 227.28089639961 0.534593477386437 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773397_at YDR398W.S1 Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA 2.98395535816194 190.802635192871 427.04280090332 UTP5 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction 30515 // snoRNA binding // inferred from physical interaction 391.440185546875 173.172714233398 208.432556152344 462.645416259766 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR398W /GEN=UTP5 /DB_XREF=GI:6320606 /SEG=NC_001136:+1267459,1269390 /DEF=Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA /NOTE=Utp5p; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: snoRNA binding [goid GO:0030515] [evidence IPI] [pmid 12068309]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP,IPI] [pmid 12068309] --- --- --- --- --- --- S0002806 // UTP5 SGDID:S0002806, Chr IV from 1267461-1269392, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023733 // cdna:GeneFinder chromosome:SGD1:IV:1267461:1269392:1 // ensembl // 10 // --- /// GENSCAN00000025416 // cdna:Genscan chromosome:SGD1:IV:1267461:1269392:1 // ensembl // 10 // --- /// YDR398W // cdna:known chromosome:SGD1:IV:1267461:1269392:1 gene:YDR398W // ensembl // 10 // --- --- No cerevisiae_gene 2.98395535816194 -2.2604033625026 -1.39856084672238 -1.87801844765925 1.18190577600869 Max fold change below threshold 4 2.98395535816194 Max fold change at or above threshold 0.588579567071282 -0.968275940804429 -0.716774978393511 1.09647135212666 308.922718048096 140.197642112142 0.45382755595953 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777971_at YKL127W.S1 Phosphoglucomutase, minor isoform; catalyzes the conversion from glucose-1-phosphate to glucose-6-phosphate, which is a key step in hexose metabolism 2.98303227696976 228.921882629395 363.970443725586 PGM1 6008 // glucose 1-phosphate utilization // inferred from mutant phenotype /// 6008 // glucose 1-phosphate utilization // inferred from sequence similarity /// 6010 // glucose 6-phosphate utilization // inferred from sequence similarity /// 6010 // glucose 6-phosphate utilization // inferred from mutant phenotype 5829 // cytosol // traceable author statement 4614 // phosphoglucomutase activity // inferred from mutant phenotype /// 4614 // phosphoglucomutase activity // inferred from sequence similarity 340.031585693359 203.376739501953 254.467025756836 387.909301757813 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL127W /GEN=PGM1 /DB_XREF=GI:6322722 /SEG=NC_001143:+203187,204899 /DEF=phosphoglucomutase, minor isoform /NOTE=Pgm1p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: phosphoglucomutase activity [goid GO:0004614] [evidence IMP,ISS] [pmid 8119301]; go_process: glucose 1-phosphate utilization [goid GO:0006008] [evidence IMP,ISS] [pmid 8119301]; go_process: glucose 6-phosphate utilization [goid GO:0006010] [evidence IMP,ISS] [pmid 8119301] --- --- --- --- --- --- S0001610 // PGM1 SGDID:S0001610, Chr XI from 203187-204899, Verified ORF // sgd // 11 // --- /// GENSCAN00000018322 // cdna:Genscan chromosome:SGD1:XI:203187:204899:1 // ensembl // 11 // --- /// GENEFINDER00000023030 // cdna:GeneFinder chromosome:SGD1:XI:203187:204899:1 // ensembl // 11 // --- /// YKL127W // cdna:known chromosome:SGD1:XI:203187:204899:1 gene:YKL127W // ensembl // 11 // --- --- No cerevisiae_gene 2.98303227696976 -1.67192957526047 -1.09376300678355 -1.33625008852144 1.14080373141461 Max fold change below threshold 4 2.98303227696976 Max fold change at or above threshold 0.524841726587457 -1.1207122518219 -0.505499354892946 1.10136988012738 296.44616317749 83.0448882166123 0.280134805343698 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777405_at YHR088W.S1 Nucleolar protein involved in the assembly of the large ribosomal subunit; constituent of 66S pre-ribosomal particles; contains a sigma(70)-like motif, which is thought to bind RNA 2.98260814044369 1059.62585449219 723.465911865234 RPF1 27 // ribosomal large subunit assembly and maintenance // inferred from physical interaction /// 30489 // processing of 27S pre-rRNA // inferred from mutant phenotype 5730 // nucleolus // inferred from direct assay /// 5730 // nucleolus // inferred from physical interaction 42134 // rRNA primary transcript binding // inferred from physical interaction 690.181518554688 994.487060546875 1124.7646484375 756.750305175781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR088W /GEN=RPF1 /DB_XREF=GI:6321880 /SEG=NC_001140:+281496,282383 /DEF=Nucleolar protein involved in the assembly of the large ribosomal subunit; contains a sigma(70)-like motif, which is thought to bind RNA /NOTE=Rpf1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11864606]; go_component: nucleolus [goid GO:0005730] [evidence IPI] [pmid 11864607]; go_function: rRNA primary transcript binding [goid GO:0042134] [evidence IPI] [pmid 11864606]; go_process: processing of 27S pre-rRNA [goid GO:0030489] [evidence IMP] [pmid 11864606]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IPI] [pmid 11864607] --- --- --- --- --- --- S0001130 // RPF1 SGDID:S0001130, Chr VIII from 281496-282383, Verified ORF // sgd // 11 // --- /// YHR088W // cdna:known chromosome:SGD1:VIII:281496:282383:1 gene:YHR088W // ensembl // 11 // --- --- No cerevisiae_gene 2.98260814044369 1.4409065351814 -1.14294484672695 1.6296649768207 1.09645112891533 Max fold change below threshold 4 2.98260814044369 Max fold change at or above threshold -0.991628570301165 0.506938815759722 1.14849710966875 -0.66380735512731 891.545883178711 203.064303162289 0.227766519921875 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778106_x_at YLR462W.S1 Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// similar to other subtelomerically-encoded proteins /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein 2.98251464917804 94.0430870056152 54.7874298095703 YRF1-5 /// YRF1-7 /// YRF1-6 /// YRF1-3 /// YRF1-2 /// YRF1-1 722 // telomerase-independent telomere maintenance // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay /// 5634 // nucleus // inferred from curator 4386 // helicase activity // inferred from sequence similarity /// 3678 // DNA helicase activity // inferred from direct assay 47.814640045166 99.1309432983398 88.9552307128906 61.7602195739746 0.000732421991415322 0.00805663969367743 0.00292969006113708 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR462W /GEN=PAU4 /DB_XREF=GI:6323495 /SEG=NC_001144:+1065953,1066561 /DEF=Hypothetical ORF /NOTE=Ylr462wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 0.239999994635582 /// scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 2.40000009536743 /// scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 5.0 --- S0004454 // YLR462W SGDID:S0004454, Chr XII from 1065953-1066561, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018170 // cdna:Genscan chromosome:SGD1:XII:1065953:1066561:1 // ensembl // 11 // --- /// YLR462W // cdna:known chromosome:SGD1:XII:1065953:1066561:1 gene:YLR462W // ensembl // 11 // --- S0002953 // sgd // 1 // Cross Hyb Matching Probes /// S0000992 // sgd // 7 // Cross Hyb Matching Probes /// S0003528 // sgd // 1 // Cross Hyb Matching Probes /// S0001041 // sgd // 1 // Cross Hyb Matching Probes /// S0001439 // sgd // 7 // Cross Hyb Matching Probes /// S0003760 // sgd // 7 // Cross Hyb Matching Probes /// S0004459 // sgd // 1 // Cross Hyb Matching Probes /// S0004602 // sgd // 1 // Cross Hyb Matching Probes /// S0005283 // sgd // 1 // Cross Hyb Matching Probes /// S0006204 // sgd // 1 // Cross Hyb Matching Probes /// S0006406 // sgd // 1 // Cross Hyb Matching Probes /// GENSCAN00000025522 // ensembl // 1 // Cross Hyb Matching Probes /// GENSCAN00000016342 // ensembl // 7 // Cross Hyb Matching Probes /// GENSCAN00000016965 // ensembl // 7 // Cross Hyb Matching Probes /// GENEFINDER00000019661 // ensembl // 7 // Cross Hyb Matching Probes /// GENSCAN00000016512 // ensembl // 1 // Cross Hyb Matching Probes /// GENSCAN00000023969 // ensembl // 7 // Cross Hyb Matching Probes /// GENSCAN00000017636 // ensembl // 1 // Cross Hyb Matching Probes /// GENSCAN00000017640 // ensembl // 1 // Cross Hyb Matching Probes /// GENSCAN00000018172 // ensembl // 1 // Cross Hyb Matching Probes /// GENSCAN00000018603 // ensembl // 1 // Cross Hyb Matching Probes /// GENSCAN00000017839 // ensembl // 1 // Cross Hyb Matching Probes /// YDR545W // ensembl // 1 // Cross Hyb Matching Probes /// YIL177C // ensembl // 7 // Cross Hyb Matching Probes /// YER190W // ensembl // 7 // Cross Hyb Matching Probes /// YGR296W // ensembl // 1 // Cross Hyb Matching Probes /// YHL049C // ensembl // 1 // Cross Hyb Matching Probes /// YJL225C // ensembl // 7 // Cross Hyb Matching Probes /// YLR467W // ensembl // 1 // Cross Hyb Matching Probes /// YML133C // ensembl // 1 // Cross Hyb Matching Probes /// YNL339C // ensembl // 1 // Cross Hyb Matching Probes /// YPL283C // ensembl // 1 // Cross Hyb Matching Probes /// YPR202W // ensembl // 1 // Cross Hyb Matching Probes /// YEL075W-A // ensembl // 9 // Negative Strand Matching Probes /// YLR463C // ensembl // 10 // Negative Strand Matching Probes No cerevisiae_gene 2.98251464917804 2.07323412253444 1.2651415262143 1.86041828671852 1.2916591971755 Max fold change below threshold 4 2.98251464917804 Max fold change at or above threshold -1.12074444394301 1.04132791734936 0.612602043840654 -0.533185517247003 74.4152584075928 23.7347760287262 0.318950394537695 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1770298_at YPL081W.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps9Ap and has similarity to E. coli S4 and rat S9 ribosomal proteins 2.98221593784671 295.91975402832 404.095169067383 RPS9A 6412 // protein biosynthesis // traceable author statement /// 6450 // regulation of translational fidelity // inferred from mutant phenotype 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 5737 // cytoplasm // inferred from direct assay /// 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 346.35888671875 223.738403320313 368.101104736328 461.831451416016 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL081W /GEN=RPS9A /DB_XREF=GI:6325176 /SEG=NC_001148:+404945,406039 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps9Ap and has similarity to E. coli S4 and rat S9 ribosomal proteins /NOTE=Rps9ap; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: regulation of translational fidelity [goid GO:0006450] [evidence IMP] [pmid 9733638] --- --- --- --- --- --- S0006002 // RPS9A SGDID:S0006002, Chr XVI from 404947-404953,405455-406041, intron sequence removed, Verified ORF // sgd // 11 // --- /// YPL081W // cdna:known chromosome:SGD1:XVI:404947:406041:1 gene:YPL081W // ensembl // 11 // --- GENEFINDER00000020997 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 2.98221593784671 -1.54805291169835 -1.12599969224594 1.0627736687329 1.3333899291316 Max fold change below threshold 4 2.98221593784671 Max fold change at or above threshold -0.0372451132682355 -1.28897051485612 0.184702197859483 1.14151343026487 350.007461547852 97.9611688337448 0.279883087064851 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770796_at SPAC22F8.06.S1 --- 2.97998612461142 --- --- --- --- 0.368013471364975 0.605587542057037 1.09667503833771 0.722203969955444 0.943848013877869 0.985840022563934 0.904784977436066 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F8.06 /GEN=pam1 /DEF=20S proteasome component (beta 6) --- --- --- --- --- --- SPAC22F8.06 // |pam1||20S proteasome component |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.03053323502424 1.64555808191176 1.55148288255327 2.97998612461142 1.96243894897859 Max fold change below threshold 0 2.97998612461142 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777555_at YHR010W.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl27Bp and has similarity to rat L27 ribosomal protein 2.97885838473585 1205.51214599609 3148.53112792969 RPL27A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3458.7978515625 1249.90905761719 1161.115234375 2838.26440429688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR010W /GEN=RPL27A /DB_XREF=GI:6321798 /SEG=NC_001140:+126514,127485 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl27Bp and has similarity to rat L27 ribosomal protein /NOTE=Rpl27ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0001052 // RPL27A SGDID:S0001052, Chr VIII from 126514-126544,127106-127485, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000016562 // cdna:Genscan chromosome:SGD1:VIII:126997:127485:1 // ensembl // 10 // --- /// GENEFINDER00000020289 // cdna:GeneFinder chromosome:SGD1:VIII:126997:127485:1 // ensembl // 10 // --- /// YHR010W // cdna:known chromosome:SGD1:VIII:126514:127485:1 gene:YHR010W // ensembl // 11 // --- --- No cerevisiae_gene 1.01101301622984 -2.76723960874107 -1.66296087793293 -2.97885838473585 -1.21863130380883 Max fold change below threshold 4 2.97885838473585 Max fold change at or above threshold 1.11398509152424 -0.805748756914103 -0.882919010336331 0.574682675726191 2177.02163696289 1150.6224134883 0.528530536376986 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778664_at YER157W.S1 Essential component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tethering complex that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments 2.9781359099631 132.946994781494 387.140258789063 COG3 301 // retrograde transport, vesicle recycling within Golgi // inferred from mutant phenotype /// 301 // retrograde transport, vesicle recycling within Golgi // traceable author statement /// 6888 // ER to Golgi transport // inferred from genetic interaction /// 6891 // intra-Golgi transport // inferred from physical interaction /// 6891 // intra-Golgi transport // inferred from genetic interaction 300 // peripheral to membrane of membrane fraction // inferred from direct assay /// 5625 // soluble fraction // inferred from direct assay /// 17119 // Golgi transport complex // inferred from physical interaction 8565 // protein transporter activity // traceable author statement 366.952209472656 142.678588867188 123.215400695801 407.328308105469 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER157W /GEN=COG3 /DB_XREF=GI:6321005 /SEG=NC_001137:+484783,487188 /DEF=Conserved Oligomeric Golgi complex 3 secretion (golgi retention) deficient /NOTE=Cog3p; go_component: Golgi transport complex [goid GO:0017119] [evidence IPI] [pmid 11703943]; go_component: peripheral to membrane of membrane fraction [goid GO:0000300] [evidence IDA] [pmid 10512869]; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 10512869]; go_function: protein transporter activity [goid GO:0008565] [evidence TAS] [pmid 12077121]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IGI] [pmid 10512869]; go_process: intra-Golgi transport [goid GO:0006891] [evidence IGI,IPI] [pmid 11703943]; go_process: retrograde transport, vesicle recycling within Golgi [goid GO:0000301] [evidence IMP,TAS] [pmid 11703943] --- --- --- --- --- --- S0000959 // COG3 SGDID:S0000959, Chr V from 484783-487188, Verified ORF // sgd // 11 // --- /// GENSCAN00000016936 // cdna:Genscan chromosome:SGD1:V:484783:487188:1 // ensembl // 11 // --- /// GENEFINDER00000019622 // cdna:GeneFinder chromosome:SGD1:V:484783:487188:1 // ensembl // 11 // --- /// YER157W // cdna:known chromosome:SGD1:V:484783:487188:1 gene:YER157W // ensembl // 11 // --- --- No cerevisiae_gene -1.00599348161395 -2.57188000236135 1.23706547330445 -2.9781359099631 1.11003094569409 Max fold change below threshold 4 2.9781359099631 Max fold change at or above threshold 0.722868437509461 -0.79357035184141 -0.925171801123966 0.995873715455915 260.043626785278 147.894937916664 0.568731253847584 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777911_at SPAP8A3.12c.S1 --- 2.97728750402051 --- --- --- --- 0.87301629781723 2.59922051429749 0.999277591705322 0.455826848745346 0.981445014476776 0.850341975688934 0.969726979732513 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP8A3.12c /DEF=tripeptidylpeptidase (predicted) --- --- --- --- --- --- SPAP8A3.12c // |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.65715140314429 2.97728750402051 -1.12267053144333 1.14462650262518 -1.91523667423319 Max fold change below threshold 1 2.97728750402051 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771419_at YPL026C.S1 Putative serine/threonine protein kinase; involved in the adaptation to low concentrations of glucose independent of the SNF3 regulated pathway 2.97708652342379 1780.88922119141 703.248443603516 SKS1 6468 // protein amino acid phosphorylation // inferred from sequence similarity /// 9749 // response to glucose stimulus // inferred from genetic interaction /// 15758 // glucose transport // inferred from genetic interaction /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay 4674 // protein serine/threonine kinase activity // inferred from sequence similarity 634.967651367188 1671.4248046875 1890.35363769531 771.529235839844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL026C /GEN=SKS1 /DB_XREF=GI:6325231 /SEG=NC_001148:-500671,502179 /DEF=multicopy suppressor of snf3 and grr1 mutants /NOTE=Sks1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence ISS] [pmid 8948096]; go_process: glucose transport [goid GO:0015758] [evidence IGI] [pmid 8948096]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IGI] [pmid 8948096]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence ISS] [pmid 8948096] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 6.0E-33 /// hanks // 2.2.12 // CaMK Group; CaMK II KIN1/SNF1/Nim1; YCL24 // 3.0E-49 --- --- S0005947 // SKS1 SGDID:S0005947, Chr XVI from 502181-500673, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000020956 // cdna:GeneFinder chromosome:SGD1:XVI:500673:502181:-1 // ensembl // 10 // --- /// YPL026C // cdna:known chromosome:SGD1:XVI:500673:502181:-1 gene:YPL026C // ensembl // 10 // --- --- No cerevisiae_gene 2.63519610585477 2.63229914325345 1.70797102076166 2.97708652342379 1.21506856952258 Max fold change below threshold 4 2.97708652342379 Max fold change at or above threshold -0.962078732359861 0.680404292495254 1.02734279421211 -0.745668354347508 1242.06883239746 631.030663718269 0.508048062441309 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771106_at YBR162C.S1 Covalently-bound cell wall protein of unknown function; identified as a cell cycle regulated SBF target gene; deletion mutants are highly resistant to treatment with beta-1,3-glucanase; has sequence similarity to YJL171C 2.97597152566455 421.894226074219 1023.51956176758 TOS1 --- 324 // vacuole (sensu Fungi) // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 994.179260253906 385.545562744141 458.242889404297 1052.85986328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR162C /GEN=CSH1 /DB_XREF=GI:6319638 /SEG=NC_001134:-563160,564527 /DEF=Target of SBF /NOTE=Ybr162cp --- --- --- --- --- --- S0000366 // TOS1 SGDID:S0000366, Chr II from 564565-563198, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021270 // cdna:Genscan chromosome:SGD1:II:563198:564565:-1 // ensembl // 11 // --- /// GENEFINDER00000022305 // cdna:GeneFinder chromosome:SGD1:II:563198:564565:-1 // ensembl // 11 // --- /// YBR162C // cdna:known chromosome:SGD1:II:563198:564565:-1 gene:YBR162C // ensembl // 11 // --- --- No cerevisiae_gene 2.97597152566455 -2.57862975565789 -1.24097072320381 -2.16954650741294 1.05902416734418 Max fold change below threshold 4 2.97597152566455 Max fold change at or above threshold 0.776886544051868 -0.964872060106954 -0.756830351723497 0.944815867778582 722.706893920898 349.436308829778 0.483510413099816 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777020_at YHR052W.S1 Essential protein that interacts with proteasome components and has a potential role in proteasome substrate specificity; also copurifies with 66S pre-ribosomal particles 2.9726234504052 378.010955810547 549.896209716797 CIC1 30163 // protein catabolism // inferred from mutant phenotype /// 30163 // protein catabolism // inferred from direct assay /// 30163 // protein catabolism // inferred from physical interaction /// 42273 // ribosomal large subunit biogenesis // inferred from physical interaction 502 // proteasome complex (sensu Eukaryota) // inferred from direct assay /// 502 // proteasome complex (sensu Eukaryota) // inferred from physical interaction /// 5730 // nucleolus // inferred from direct assay 30674 // protein binding, bridging // inferred from mutant phenotype /// 30674 // protein binding, bridging // inferred from physical interaction 522.513854980469 374.558624267578 381.463287353516 577.278564453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR052W /GEN=CIC1 /DB_XREF=GI:6321843 /SEG=NC_001140:+210841,211971 /DEF=Core interacting component 1 /NOTE=Cic1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11500370]; go_component: proteasome complex (sensu Eukarya) [goid GO:0000502] [evidence IDA,IPI] [pmid 11500370]; go_function: protein binding, bridging [goid GO:0030674] [evidence IMP,IPI] [pmid 11500370]; go_process: protein catabolism [goid GO:0030163] [evidence IDA,IMP,IPI] [pmid 11500370] --- --- --- --- scop // a.4.5.Arginine repressor (ArgR), N-terminal DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Arginine repressor (ArgR), N-terminal DNA-binding domain // 3.40000009536743 --- S0001094 // CIC1 SGDID:S0001094, Chr VIII from 210841-211971, Verified ORF // sgd // 11 // --- /// GENSCAN00000016599 // cdna:Genscan chromosome:SGD1:VIII:210841:211971:1 // ensembl // 11 // --- /// GENEFINDER00000020115 // cdna:GeneFinder chromosome:SGD1:VIII:210841:211971:1 // ensembl // 11 // --- /// YHR052W // cdna:known chromosome:SGD1:VIII:210841:211971:1 gene:YHR052W // ensembl // 11 // --- --- No cerevisiae_gene 2.9726234504052 -1.39501221204613 -1.17216874097386 -1.36976184157989 1.10481006187808 Max fold change below threshold 4 2.9726234504052 Max fold change at or above threshold 0.575449629553041 -0.878450420449573 -0.81060090977309 1.11360170066962 463.953582763672 101.764375558433 0.219341717230083 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772065_at YDR418W.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl12Bp; rpl12a rpl12b double mutant exhibits slow growth and slow translation; has similarity to E. coli L11 and rat L12 ribosomal proteins /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl12Ap; rpl12a rpl12b double mutant exhibits slow growth and slow translation; has similarity to E. coli L11 and rat L12 ribosomal proteins 2.97227452382671 1526.86920166016 3645.97375488281 RPL12A /// RPL12B 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3966.341796875 1334.44665527344 1719.29174804688 3325.60571289063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR418W /GEN=RPL12B /DB_XREF=GI:6320625 /SEG=NC_001136:+1301604,1302101 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl12Ap; rpl12a rpl12b double mutant exhibits slow growth and slow translation; has similarity to E. coli L11 and rat L12 ribosomal proteins /NOTE=Rpl12bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 9822666] --- --- --- --- --- --- S0002826 // RPL12B SGDID:S0002826, Chr IV from 1301606-1302103, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023921 // cdna:GeneFinder chromosome:SGD1:IV:1301606:1302103:1 // ensembl // 11 // --- /// GENSCAN00000025430 // cdna:Genscan chromosome:SGD1:IV:1301606:1302103:1 // ensembl // 11 // --- /// YDR418W // cdna:known chromosome:SGD1:IV:1301606:1302103:1 gene:YDR418W // ensembl // 11 // --- YDR417C // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene 1.07146856335562 -2.97227452382671 -1.50146564037491 -2.30696262073077 -1.19266748355067 Max fold change below threshold 4 2.97227452382671 Max fold change at or above threshold 1.09435621659602 -0.992888076288468 -0.687683772804266 0.586215632496714 2586.42147827148 1260.94255021984 0.487524002106002 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773182_at YOL123W.S1 Subunit of cleavage factor I, a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends; RRM-containing heteronuclear RNA binding protein and hnRNPA/B family member that binds to poly (A) signal sequences 2.97221380399972 351.628326416016 971.866302490234 HRP1 6378 // mRNA polyadenylylation // inferred from direct assay /// 6378 // mRNA polyadenylylation // inferred from mutant phenotype /// 6379 // mRNA cleavage // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5849 // mRNA cleavage factor complex // inferred from physical interaction 3723 // RNA binding // inferred from direct assay 967.638000488281 325.561370849609 377.695281982422 976.094604492188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL123W /GEN=HRP1 /DB_XREF=GI:6324449 /SEG=NC_001147:+87843,89447 /DEF=Subunit of cleavage factor I, a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends; RRM-containing heteronuclear RNA binding protein and hnRNPA/B family member that binds to poly (A) signal sequences /NOTE=Hrp1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9334319]; go_component: mRNA cleavage factor complex [goid GO:0005849] [evidence IPI] [pmid 11344258]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 9334319]; go_function: cleavage/polyadenylation specificity factor activity [goid GO:0030364] [evidence IDA] [pmid 11344258]; go_process: mRNA cleavage [goid GO:0006379] [evidence IDA] [pmid 11344258]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IDA] [pmid 11344258]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IMP] [pmid 9334319] --- --- --- --- --- --- S0005483 // HRP1 SGDID:S0005483, Chr XV from 87843-89447, Verified ORF // sgd // 11 // --- /// GENSCAN00000017369 // cdna:Genscan chromosome:SGD1:XV:87843:89465:1 // ensembl // 11 // --- /// GENEFINDER00000022918 // cdna:GeneFinder chromosome:SGD1:XV:87843:89465:1 // ensembl // 11 // --- /// YOL123W // cdna:known chromosome:SGD1:XV:87843:89447:1 gene:YOL123W // ensembl // 11 // --- --- No cerevisiae_gene 1.47157867262075 -2.97221380399972 -1.47154456301141 -2.56195416423898 1.00873942941435 Max fold change below threshold 4 2.97221380399972 Max fold change at or above threshold 0.852673319142408 -0.937121649884058 -0.791797855878831 0.876246186620481 661.747314453125 358.743119044479 0.542114960210981 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778475_at YMR085W.S1 Hypothetical protein 2.97166584394819 1883.99822998047 688.159362792969 --- --- --- --- 637.0205078125 1874.984375 1893.01208496094 739.298217773438 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR085W /GEN=ADH3 /DB_XREF=GI:6323731 /SEG=NC_001145:+437490,438788 /DEF=Hypothetical ORF /NOTE=Ymr085wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004690 // YMR085W SGDID:S0004690, Chr XIII from 437490-438788, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018782 // cdna:Genscan chromosome:SGD1:XIII:437490:438788:1 // ensembl // 11 // --- /// GENEFINDER00000021992 // cdna:GeneFinder chromosome:SGD1:XIII:437490:438788:1 // ensembl // 11 // --- /// YMR085W // cdna:known chromosome:SGD1:XIII:437490:438788:1 gene:YMR085W // ensembl // 11 // --- --- No cerevisiae_gene -2.17635310950439 2.94336579749781 1.3352849263156 2.97166584394819 1.16055638508744 Max fold change below threshold 4 2.97166584394819 Max fold change at or above threshold -0.938327204140585 0.851365947882516 0.877428153669708 -0.79046689741164 1286.07879638672 691.718502575754 0.537850794616286 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776792_at YBR261C.S1 Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family 2.97118704951273 116.932411193848 276.773376464844 --- --- 5737 // cytoplasm // inferred from direct assay 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from sequence similarity 256.082946777344 86.1887664794922 147.676055908203 297.463806152344 0.000244141003349796 0.014160200022161 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR261C /GEN=RGD1 /DB_XREF=GI:6319738 /SEG=NC_001134:-734789,735487 /DEF=Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family /NOTE=Ybr261cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: S-adenosylmethionine-dependent methyltransferase activity [goid GO:0008757] [evidence ISS] [pmid 12872006]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000465 // YBR261C SGDID:S0000465, Chr II from 735525-734827, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021349 // cdna:Genscan chromosome:SGD1:II:734827:735525:-1 // ensembl // 11 // --- /// GENEFINDER00000022356 // cdna:GeneFinder chromosome:SGD1:II:734827:735525:-1 // ensembl // 11 // --- /// YBR261C // cdna:known chromosome:SGD1:II:734827:735525:-1 gene:YBR261C // ensembl // 11 // --- --- No cerevisiae_gene 1.61557136500238 -2.97118704951273 1.45008977127095 -1.73408576767873 1.16159162449415 Max fold change below threshold 4 2.97118704951273 Max fold change at or above threshold 0.609877755358827 -1.13948217547817 -0.506362193417641 1.03596661353698 196.852893829346 97.1179099869768 0.493352716832141 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1775078_at YFL002C.S1 Putative ATP-dependent RNA helicase, nucleolar protein required for synthesis of 60S ribosomal subunits at a late step in the pathway; sediments with 66S pre-ribosomes in sucrose gradients 2.97076966509892 283.980682373047 144.184005737305 SPB4 27 // ribosomal large subunit assembly and maintenance // traceable author statement /// 6365 // 35S primary transcript processing // traceable author statement 5730 // nucleolus // traceable author statement 4004 // ATP-dependent RNA helicase activity // traceable author statement 132.744201660156 283.818328857422 284.143035888672 155.623809814453 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL002C /GEN=SPB4 /DB_XREF=GI:14318521 /SEG=NC_001138:-145109,146929 /DEF=involved in the maturation of 25S ribosomal RNA /NOTE=Spb4p; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 10690410]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0001894 // SPB4 SGDID:S0001894, Chr VI from 146929-145109, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018575 // cdna:GeneFinder chromosome:SGD1:VI:145109:146314:-1 // ensembl // 11 // --- /// GENSCAN00000023242 // cdna:Genscan chromosome:SGD1:VI:145109:146842:-1 // ensembl // 11 // --- /// YFL002C // cdna:known chromosome:SGD1:VI:145109:146929:-1 gene:YFL002C // ensembl // 11 // --- --- No cerevisiae_gene 2.97076966509892 2.13808456646594 1.62345514536198 2.14053067731062 1.17235862559837 Max fold change below threshold 4 2.97076966509892 Max fold change at or above threshold -1.00107941457076 0.858284401201454 0.862280773815573 -0.719485760446267 214.082344055176 81.2504394867569 0.379528913724039 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774593_at YGR286C.S1 Biotin synthase, catalyzes the conversion of dethiobiotin to biotin, which is the last step of the biotin biosynthesis pathway; complements E. coli bioB mutant 2.97063917807278 863.410858154297 562.156341552734 BIO2 9102 // biotin biosynthesis // traceable author statement 5739 // mitochondrion // inferred from direct assay 4076 // biotin synthase activity // traceable author statement 547.184814453125 768.577758789063 958.243957519531 577.127868652344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR286C /GEN=BIO2 /DB_XREF=GI:6321725 /SEG=NC_001139:-1063818,1064945 /DEF=Biotin synthase /NOTE=Bio2p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: biotin synthase activity [goid GO:0004076] [evidence TAS] [pmid 10333520]; go_process: biotin biosynthesis [goid GO:0009102] [evidence TAS] [pmid 10333520] --- --- --- --- --- --- S0003518 // BIO2 SGDID:S0003518, Chr VII from 1064946-1063819, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019562 // cdna:Genscan chromosome:SGD1:VII:1063819:1064946:-1 // ensembl // 11 // --- /// GENEFINDER00000021576 // cdna:GeneFinder chromosome:SGD1:VII:1063819:1064943:-1 // ensembl // 11 // --- /// YGR286C // cdna:known chromosome:SGD1:VII:1063819:1064946:-1 gene:YGR286C // ensembl // 11 // --- --- No cerevisiae_gene 2.97063917807278 1.40460359733704 1.02795815674067 1.75122542184807 1.05472201239566 Max fold change below threshold 4 2.97063917807278 Max fold change at or above threshold -0.868016361824858 0.292455302333377 1.28662541889018 -0.711064359398703 712.783599853516 190.778414651363 0.267652643369699 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774157_at YMR271C.S1 One of two orotate phosphoribosyltransferase isozymes (see also URA5) that catalyze the fifth enzymatic step in the de novo biosynthesis of pyrimidines, converting orotate into orotidine-5'-phosphate 2.97060996199825 3346.90979003906 1199.74426269531 URA10 6207 // 'de novo' pyrimidine base biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 4588 // orotate phosphoribosyltransferase activity // traceable author statement 1167.64526367188 3468.61865234375 3225.20092773438 1231.84326171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR271C /GEN=URA10 /DB_XREF=GI:6323927 /SEG=NC_001145:-806864,807547 /DEF=Fifth step in pyrimidine bio5 /NOTE=Ura10p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: orotate phosphoribosyltransferase activity [goid GO:0004588] [evidence TAS] [pmid 2679804]; go_process: pyrimidine base biosynthesis [goid GO:0019856] [evidence TAS] [pmid 2679804] --- --- --- --- --- --- S0004884 // URA10 SGDID:S0004884, Chr XIII from 807547-806864, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018941 // cdna:Genscan chromosome:SGD1:XIII:806864:807547:-1 // ensembl // 11 // --- /// GENEFINDER00000021886 // cdna:GeneFinder chromosome:SGD1:XIII:806864:807547:-1 // ensembl // 11 // --- /// YMR271C // cdna:known chromosome:SGD1:XIII:806864:807547:-1 gene:YMR271C // ensembl // 11 // --- --- No cerevisiae_gene -2.03260420088747 2.97060996199825 1.84245448415374 2.7621410612262 1.05498073776704 Max fold change below threshold 4 2.97060996199825 Max fold change at or above threshold -0.888869281130781 0.960907599428504 0.765221512176246 -0.837259830473968 2273.32702636719 1243.91942231226 0.54718014957138 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775937_at YMR030W-A.S1 Identified by fungal homology and RT-PCR 2.96874258546833 272.471534729004 788.918273925781 --- --- --- --- 744.600830078125 252.362747192383 292.580322265625 833.235717773438 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR030W-A /GEN=HOF1 /DB_XREF=GI:33438853 /SEG=NC_001145:+337312,337602 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ymr030w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028574 // span:59-81 // numtm:1 S0028574 // YMR030W-A SGDID:S0028574, Chr XIII from 337312-337602, Uncharacterized ORF // sgd // 11 // --- /// YMR030W-A // cdna:known chromosome:SGD1:XIII:337312:337602:1 gene:YMR030W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.59889126967082 -2.95051800775689 -2.96874258546833 -2.54494500625413 1.11903678335413 Max fold change below threshold 4 2.96874258546833 Max fold change at or above threshold 0.711107557405713 -0.925285728822602 -0.791586667075051 1.00576483849194 530.694904327393 300.80671133789 0.566816656585643 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776709_at YML130C.S1 Glycoprotein required for oxidative protein folding in the endoplasmic reticulum 2.96874012313086 2373.66687011719 899.940307617188 ERO1 6457 // protein folding // inferred from mutant phenotype /// 6467 // protein thiol-disulfide exchange // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay 9055 // electron carrier activity // inferred from mutant phenotype /// 9055 // electron carrier activity // inferred from sequence similarity 824.784240722656 2298.763671875 2448.57006835938 975.096374511719 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML130C /GEN=ERO1 /DB_XREF=GI:6323505 /SEG=NC_001145:-11484,13175 /DEF=Glycoprotein required for oxidative protein folding in the endoplasmic reticulum /NOTE=Ero1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 9659914]; go_function: electron carrier activity [goid GO:0009055] [evidence IMP,ISS] [pmid 10982384]; go_process: protein folding [goid GO:0006457] [evidence IMP] [pmid 9659913]; go_process: protein thiol-disulfide exchange [goid GO:0006467] [evidence IMP] [pmid 10982384] --- --- --- --- --- --- S0004599 // ERO1 SGDID:S0004599, Chr XIII from 13175-11484, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018606 // cdna:Genscan chromosome:SGD1:XIII:11484:13175:-1 // ensembl // 11 // --- /// GENEFINDER00000021845 // cdna:GeneFinder chromosome:SGD1:XIII:11484:13175:-1 // ensembl // 11 // --- /// YML130C // cdna:known chromosome:SGD1:XIII:11484:13175:-1 gene:YML130C // ensembl // 11 // --- --- No cerevisiae_gene 1.0689988688892 2.78710911093655 1.01495967110835 2.96874012313086 1.18224418747061 Max fold change below threshold 4 2.96874012313086 Max fold change at or above threshold -0.949446093507183 0.773990689144998 0.949150429180111 -0.773695024817927 1636.80358886719 855.255873606255 0.522515883654781 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777482_at YOR111W.S1 Hypothetical protein 2.96840078389673 145.790451049805 131.984909057617 --- --- --- --- 110.609649658203 123.416976928711 168.163925170898 153.360168457031 0.00195312988944352 0.000732421991415322 0.000732421991415322 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR111W /GEN=TFC7 /DB_XREF=GI:6324685 /SEG=NC_001147:+530429,531127 /DEF=Hypothetical ORF /NOTE=Yor111wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005637 // YOR111W SGDID:S0005637, Chr XV from 530429-531127, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017543 // cdna:Genscan chromosome:SGD1:XV:530564:531127:1 // ensembl // 11 // --- /// YOR111W // cdna:known chromosome:SGD1:XV:530429:531127:1 gene:YOR111W // ensembl // 11 // --- --- No cerevisiae_gene 1.51743943989403 1.11578851673506 2.96840078389673 1.52033683942174 1.38649899833272 Max fold change below threshold 4 2.96840078389673 Max fold change at or above threshold -1.06740177823938 -0.58396768782248 1.10508107039952 0.546288395662341 138.887680053711 26.4923958082128 0.190746910006471 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778250_at SPAC1B3.15c.S1 --- 2.96688662076936 --- --- --- --- 7.65802907943726 4.26508903503418 12.2754125595093 3.84890413284302 0.24609400331974 0.696289002895355 0.219482004642487 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B3.15c /DEF=transporter --- --- --- --- --- --- SPAC1B3.15c // |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.65572588606828 -1.79551447028019 -2.96688662076936 1.6029467154245 -1.98966480201226 Max fold change below threshold 4 2.96688662076936 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770381_at YGL089C.S1 Mating pheromone alpha-factor, made by alpha cells; interacts with mating type a cells to induce cell cycle arrest and other responses leading to mating; also encoded by MF(ALPHA)1, which is more highly expressed than MF(ALPHA)2 2.9667189209037 10.3466780185699 23.4842729568481 MF(ALPHA)2 749 // response to pheromone during conjugation with cellular fusion // inferred from mutant phenotype 5576 // extracellular region // traceable author statement 772 // mating pheromone activity // inferred from direct assay /// 772 // mating pheromone activity // inferred from mutant phenotype 23.6747169494629 7.98010110855103 12.7132549285889 23.2938289642334 0.00805663969367743 0.0676269978284836 0.0461426004767418 0.0375977009534836 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL089C /GEN=MF(ALPHA)2 /DB_XREF=GI:6321349 /SEG=NC_001139:-344792,345154 /DEF=alpha mating factor /NOTE=Mf(alpha)2p; go_component: extracellular [goid GO:0005576] [evidence NAS] [pmid 6754095]; go_function: pheromone activity [goid GO:0005186] [evidence NAS] [pmid 6754095]; go_process: response to pheromone during conjugation with cellular fusion [goid GO:0000749] [evidence NAS] [pmid 6754095] --- --- --- --- --- --- S0003057 // MF(ALPHA)2 SGDID:S0003057, Chr VII from 345156-344794, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021644 // cdna:GeneFinder chromosome:SGD1:VII:344794:345156:-1 // ensembl // 11 // --- /// YGL089C // cdna:known chromosome:SGD1:VII:344794:345156:-1 gene:YGL089C // ensembl // 11 // --- --- No cerevisiae_gene -1.10005485930229 -2.9667189209037 -1.36591378581015 -1.86220736408144 -1.01635145453392 Max fold change below threshold 4 2.9667189209037 Max fold change at or above threshold 0.863381588194743 -1.14134666829765 -0.536764351563256 0.81472943166616 16.915475487709 7.82879963410714 0.46281877442911 PPAPPP Called_P_>2EXP 4 0 PAPP 1 3 0 Yes Yes 2 < x = 3
1774053_at YBR271W.S1 Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family 2.96597110274956 118.572288513184 315.101318359375 --- --- 5737 // cytoplasm // inferred from direct assay 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from sequence similarity 284.843200683594 96.0370788574219 141.107498168945 345.359436035156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR271W /GEN=MRPL37 /DB_XREF=GI:6319748 /SEG=NC_001134:+744809,746068 /DEF=Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family /NOTE=Ybr271wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: S-adenosylmethionine-dependent methyltransferase activity [goid GO:0008757] [evidence ISS] [pmid 12872006]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- hanks // 1.1.13 // AGC group; AGC I Cyclic nucleotide regulated protein kinase (PKA & PKG); TPK2 // 6.0 scop // a.4.5.Plant O-methyltransferase, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Plant O-methyltransferase, N-terminal domain // 0.949999988079071 --- S0000475 // YBR271W SGDID:S0000475, Chr II from 744847-746106, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021355 // cdna:Genscan chromosome:SGD1:II:744847:746106:1 // ensembl // 11 // --- /// GENEFINDER00000022238 // cdna:GeneFinder chromosome:SGD1:II:744847:746106:1 // ensembl // 11 // --- /// YBR271W // cdna:known chromosome:SGD1:II:744847:746106:1 gene:YBR271W // ensembl // 11 // --- --- No cerevisiae_gene 1.17509140492634 -2.96597110274956 1.39865597313489 -2.0186255470461 1.21245455466843 Max fold change below threshold 4 2.96597110274956 Max fold change at or above threshold 0.578417045328194 -1.02744186717113 -0.644102948700432 1.09312777054337 216.836803436279 117.573293865722 0.542220195107574 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774339_at YOL048C.S1 Hypothetical protein 2.96548235387972 1152.06414794922 1691.81994628906 --- --- 5811 // lipid particle // inferred from direct assay --- 1656.24560546875 1160.21618652344 1143.912109375 1727.39428710938 0.0239257998764515 0.018554700538516 0.0239257998764515 0.014160200022161 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL048C /GEN=GSH2 /DB_XREF=GI:37362693 /SEG=NC_001147:-240202,241308 /DEF=Hypothetical ORF /NOTE=Yol048cp; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- AAP04341.1 // span:84-101,111-133,135-157,244-266 // numtm:4 /// S0005408 // span:84-101,111-133,135-157,244-266,296-318 // numtm:5 S0005408 // YOL048C SGDID:S0005408, Chr XV from 241308-241024,240945-240202, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YOL048C // cdna:known chromosome:SGD1:XV:240202:241308:-1 gene:YOL048C // ensembl // 11 // --- AY245791 // gb // 7 // Cross Hyb Matching Probes No cerevisiae_gene -2.96548235387972 -1.42753188992446 1.15087112554249 -1.44787837447903 1.04295780855551 Max fold change below threshold 4 2.96548235387972 Max fold change at or above threshold 0.74845487980021 -0.836052166311839 -0.88813360369308 0.97573089020471 1421.94204711914 313.049676972049 0.220156424522567 PPPPPP Called_P_>2EXP 4 0 PPPP 0 4 0 Yes Yes 3 < x
1778461_at SPBC342.05.S1 --- 2.96429162458276 --- --- --- --- 2.76325750350952 8.19110107421875 6.07476568222046 5.56345796585083 0.48974609375 0.149657994508743 0.0952147990465164 0.1884765625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC342.05 /GEN=crb2 /DEF=BRCT domain --- --- --- --- --- --- SPBC342.05 // |crb2|rhp9|BRCT domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.5860089499795 2.96429162458276 1.22447472127125 2.19840737770733 2.01336935076983 Max fold change below threshold 4 2.96429162458276 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771490_at YER126C.S1 Constituent of 66S pre-ribosomal particles, involved in 60S ribosomal subunit biogenesis 2.96241873822078 637.381301879883 631.063385009766 NSA2 42273 // ribosomal large subunit biogenesis // inferred from mutant phenotype /// 42273 // ribosomal large subunit biogenesis // inferred from physical interaction 5634 // nucleus // inferred from direct assay --- 590.086853027344 494.477386474609 780.285217285156 672.039916992188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER126C /GEN=NSA2 /DB_XREF=GI:6320973 /SEG=NC_001137:-413390,414175 /DEF=Constituent of 66S pre-ribosomal particles, involved in 60S ribosomal subunit biogenesis /NOTE=Nsa2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10684247]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ribosomal large subunit biogenesis [goid GO:0042273] [evidence IMP,IPI] [pmid 11583614] --- --- --- --- --- --- S0000928 // NSA2 SGDID:S0000928, Chr V from 414175-413390, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016907 // cdna:Genscan chromosome:SGD1:V:413390:414175:-1 // ensembl // 11 // --- /// GENEFINDER00000019637 // cdna:GeneFinder chromosome:SGD1:V:413390:414175:-1 // ensembl // 11 // --- /// YER126C // cdna:known chromosome:SGD1:V:413390:414175:-1 gene:YER126C // ensembl // 11 // --- --- No cerevisiae_gene 2.96241873822078 -1.19335457832437 -1.13156013132581 1.32232266026947 1.13888305347661 Max fold change below threshold 4 2.96241873822078 Max fold change at or above threshold -0.36344231964399 -1.15075715346959 1.20278327441837 0.311416198695216 634.222343444824 121.437400192453 0.191474490685485 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772425_at SPAC19G12.09.S1 --- 2.96074910964523 --- --- --- --- 7.10769701004028 19.114408493042 4.39330625534058 5.04065704345703 0.194580003619194 0.0805663987994194 0.334473013877869 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19G12.09 /DEF=oxidoreductase (predicted) --- --- --- --- --- --- SPAC19G12.09 // |||NADPH-dependent alpha-keto amide reductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.09771949885223 2.68925482699123 -2.96074910964523 -1.61784692369216 -1.41007351794869 Max fold change below threshold 4 2.96074910964523 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775827_at SPCC1620.12c.S1 --- 2.96036362749375 --- --- --- --- 0.37631356716156 1.11402499675751 0.857017755508423 0.709478437900543 0.981445014476776 0.828612983226776 0.884033203125 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1620.12c /DEF=GTPase activating protein (predicted) --- --- --- --- --- --- SPCC1620.12c // |||GTPase activating protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.01009041833703 2.96036362749375 -1.42012649676043 2.27740328889201 1.88533845126011 Max fold change below threshold 0 2.96036362749375 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775495_at YDL003W.S1 Essential protein required for sister chromatid cohesion in mitosis and meiosis; subunit of the cohesin complex; expression is cell cycle regulated and peaks in S phase 2.96030861916004 71.4413452148438 79.6339988708496 MCD1 7064 // mitotic sister chromatid cohesion // inferred from mutant phenotype /// 7064 // mitotic sister chromatid cohesion // traceable author statement /// 7076 // mitotic chromosome condensation // inferred from mutant phenotype 798 // nuclear cohesin complex // traceable author statement /// 5634 // nucleus // inferred from direct assay --- 76.8291168212891 78.6990509033203 64.1836395263672 82.4388809204102 0.000732421991415322 0.0107421996071935 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL003W /GEN=MCD1 /DB_XREF=GI:6320201 /SEG=NC_001136:+444680,446380 /DEF=Mitotic Chromosome Determinant; similar to S. pombe RAD21; may function in chromosome morphogenesis from S phase through mitosis /NOTE=Mcd1p; go_component: nuclear cohesin complex [goid GO:0000798] [evidence TAS] [pmid 9887095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitotic chromosome condensation [goid GO:0007076] [evidence IMP] [pmid 9335334]; go_process: mitotic sister chromatid cohesion [goid GO:0007064] [evidence IMP] [pmid 9335334]; go_process: mitotic sister chromatid cohesion [goid GO:0007064] [evidence TAS] [pmid 9887095] --- --- --- --- --- --- S0002161 // MCD1 SGDID:S0002161, Chr IV from 444680-446380, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023669 // cdna:GeneFinder chromosome:SGD1:IV:444680:446380:1 // ensembl // 11 // --- /// GENSCAN00000025096 // cdna:Genscan chromosome:SGD1:IV:444680:446380:1 // ensembl // 11 // --- /// YDL003W // cdna:known chromosome:SGD1:IV:444680:446380:1 gene:YDL003W // ensembl // 11 // --- --- No cerevisiae_gene 2.96030861916004 1.02433887254465 -1.42845707665746 -1.19702025918501 1.07301612111681 Max fold change below threshold 4 2.96030861916004 Max fold change at or above threshold 0.16305094890939 0.399138880474639 -1.43349975675529 0.871309927371263 75.5376720428467 7.92049839072118 0.104854944248593 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1778501_at YHR075C.S1 Protein with carboxyl methyl esterase activity that may have a role in demethylation of the phosphoprotein phosphatase catalytic subunit; also identified as a small subunit mitochondrial ribosomal protein 2.95957624984388 238.506240844727 797.553527832031 PPE1 6412 // protein biosynthesis // inferred from physical interaction /// 6464 // protein modification // inferred from genetic interaction 5763 // mitochondrial small ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // inferred from physical interaction /// 16789 // carboxylic ester hydrolase activity // inferred from direct assay 683.735046386719 245.987838745117 231.024642944336 911.372009277344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR075C /GEN=PPE1 /DB_XREF=GI:6321866 /SEG=NC_001140:-248440,249642 /DEF=Protein with carboxyl methyl esterase activity that may have a role in demethylation of the phosphoprotein phosphatase catalytic subunit; also identified as a small subunit mitochondrial ribosomal protein /NOTE=Ppe1p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IPI] [pmid 9445368]; go_function: carboxylic ester hydrolase activity [goid GO:0016789] [evidence IDA] [pmid 11060018]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IPI] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence IPI] [pmid 9445368]; go_process: protein modification [goid GO:0006464] [evidence IGI] [pmid 11060018] --- --- --- --- --- --- S0001117 // PPE1 SGDID:S0001117, Chr VIII from 249642-248440, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016619 // cdna:Genscan chromosome:SGD1:VIII:248440:249642:-1 // ensembl // 11 // --- /// YHR075C // cdna:known chromosome:SGD1:VIII:248440:249642:-1 gene:YHR075C // ensembl // 11 // --- --- No cerevisiae_gene -1.19620103129662 -2.77954816740017 -1.06369726671103 -2.95957624984388 1.33293154138229 Max fold change below threshold 4 2.95957624984388 Max fold change at or above threshold 0.493266904640226 -0.809807830383928 -0.854349890419595 1.1708908161633 518.029884338379 335.934076439206 0.64848397089727 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770945_at YLR363C.S1 Protein interacting with Nam7p, may be involved in the nonsense-mediated mRNA decay pathway 2.95922845150219 187.872589111328 521.622619628906 NMD4 184 // mRNA catabolism, nonsense-mediated decay // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay --- 513.008911132813 173.359008789063 202.386169433594 530.236328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR363C /GEN=NMD4 /DB_XREF=GI:6323395 /SEG=NC_001144:-852494,853150 /DEF=putative Upf1p-interacting protein /NOTE=Nmd4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mRNA catabolism, nonsense-mediated [goid GO:0000184] [evidence IPI] [pmid 7883168] --- --- --- --- --- --- S0004355 // NMD4 SGDID:S0004355, Chr XII from 853150-852494, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018096 // cdna:Genscan chromosome:SGD1:XII:852494:853150:-1 // ensembl // 11 // --- /// YLR363C // cdna:known chromosome:SGD1:XII:852494:853150:-1 gene:YLR363C // ensembl // 11 // --- --- No cerevisiae_gene 1.27366165790496 -2.95922845150219 1.00921067566053 -2.53480221780243 1.03358112621113 Max fold change below threshold 4 2.95922845150219 Max fold change at or above threshold 0.819230908538408 -0.938948041034376 -0.788690548072016 0.908407680567984 354.747604370117 193.18278291654 0.544564023933444 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779254_at YCR047C.S1 Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern 2.95840426906906 351.498245239258 669.602233886719 BUD23 282 // bud site selection // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from sequence similarity 666.389770507813 225.253112792969 477.743377685547 672.814697265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR047C /GEN=BUD23 /DB_XREF=GI:6319895 /SEG=NC_001135:-210713,211540 /DEF=Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern /NOTE=Bud23p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: S-adenosylmethionine-dependent methyltransferase activity [goid GO:0008757] [evidence ISS] [pmid 9873020]; go_process: bud site selection [goid GO:0000282] [evidence IMP] [pmid 11452010] --- --- --- --- --- --- S0000643 // BUD23 SGDID:S0000643, Chr III from 211540-210713, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022492 // cdna:Genscan chromosome:SGD1:III:210713:211540:-1 // ensembl // 11 // --- /// GENEFINDER00000023352 // cdna:GeneFinder chromosome:SGD1:III:210713:211540:-1 // ensembl // 11 // --- /// YCR047C // cdna:known chromosome:SGD1:III:210713:211540:-1 gene:YCR047C // ensembl // 11 // --- --- No cerevisiae_gene 1.08997309978907 -2.95840426906906 1.10047196726912 -1.39486971799834 1.00964139463443 Max fold change below threshold 4 2.95840426906906 Max fold change at or above threshold 0.73989711216848 -1.35453770251554 -0.155760879253566 0.77040146960063 510.550239562988 210.623245288918 0.412541663811977 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774691_at YBR088C.S1 Proliferating cell nuclear antigen (PCNA), functions as the sliding clamp for DNA polymerase delta; may function as a docking site for other proteins required for mitotic and meiotic chromosomal DNA replication and for DNA repair 2.95548005188658 176.470733642578 559.572219848633 POL30 6272 // leading strand elongation // traceable author statement /// 6273 // lagging strand elongation // traceable author statement /// 6280 // mutagenesis // traceable author statement /// 6284 // base-excision repair // traceable author statement /// 6289 // nucleotide-excision repair // traceable author statement /// 6298 // mismatch repair // traceable author statement /// 6301 // postreplication repair // traceable author statement 5634 // nucleus // inferred from direct assay /// 5657 // replication fork // traceable author statement 30337 // DNA polymerase processivity factor activity // traceable author statement 481.993988037109 163.084838867188 189.856628417969 637.150451660156 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR088C /GEN=POL30 /DB_XREF=GI:6319564 /SEG=NC_001134:-424947,425723 /DEF=Accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, & increases prior to DNA synthesis in meiosis; required for DNA replication & repair, required for viability in cdc44, rad50, rad52 or rad57 backgrounds /NOTE=Pol30p; go_component: replication fork [goid GO:0005657] [evidence TAS] [pmid 9759502]; go_function: DNA polymerase processivity factor activity [goid GO:0030337] [evidence TAS] [pmid 9759502]; go_process: base-excision repair [goid GO:0006284] [evidence TAS] [pmid 9745046]; go_process: lagging strand elongation [goid GO:0006273] [evidence TAS] [pmid 9745046]; go_process: leading strand elongation [goid GO:0006272] [evidence TAS] [pmid 9745046]; go_process: mismatch repair [goid GO:0006298] [evidence TAS] [pmid 10072354]; go_process: mutagenesis [goid GO:0006280] [evidence TAS] [pmid 9745046]; go_process: nucleotide-excision repair [goid GO:0006289] [evidence TAS] [pmid 9745046]; go_process: postreplication repair [goid GO:0006301] [evidence TAS] [pmid 9745046] --- --- --- --- --- --- S0000292 // POL30 SGDID:S0000292, Chr II from 425760-424984, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021211 // cdna:Genscan chromosome:SGD1:II:424984:425760:-1 // ensembl // 11 // --- /// GENEFINDER00000022152 // cdna:GeneFinder chromosome:SGD1:II:424984:425760:-1 // ensembl // 11 // --- /// YBR088C // cdna:known chromosome:SGD1:II:424984:425760:-1 gene:YBR088C // ensembl // 11 // --- YBR089W // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene 2.13063193258646 -2.95548005188658 -1.14362265876185 -2.53872615380065 1.32190539192182 Max fold change below threshold 4 2.95548005188658 Max fold change at or above threshold 0.494813133982046 -0.889735067756841 -0.773504996664977 1.16842693043977 368.021476745605 230.334450450621 0.625872306386726 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769482_at YLR125W.S1 Hypothetical protein 2.95461590441909 66.8052749633789 28.2104005813599 --- --- --- --- 25.0137672424316 59.704475402832 73.9060745239258 31.4070339202881 0.00292969006113708 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR125W /GEN=YPS3 /DB_XREF=GI:6323154 /SEG=NC_001144:+393485,393895 /DEF=Hypothetical ORF /NOTE=Ylr125wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004115 // YLR125W SGDID:S0004115, Chr XII from 393485-393895, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017915 // cdna:Genscan chromosome:SGD1:XII:393485:393895:1 // ensembl // 11 // --- /// YLR125W // cdna:known chromosome:SGD1:XII:393485:393895:1 gene:YLR125W // ensembl // 11 // --- --- No cerevisiae_gene 2.89682546339456 2.38686459437239 1.61142049917884 2.95461590441909 1.25558991638058 Max fold change below threshold 4 2.95461590441909 Max fold change at or above threshold -0.970737802975862 0.52634925285445 1.13922317050339 -0.694834620381977 47.5078377723694 23.1721382035197 0.487754006287287 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773759_at SPCC622.12c.S1 --- 2.95460265175889 --- --- --- --- 10.2378282546997 4.66391086578369 13.6500692367554 10.7221689224243 0.194580003619194 0.5 0.24609400331974 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC622.12c /DEF=NADP-specific glutamate dehydrogenase (predicted) --- --- --- --- --- --- D89153 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0633. // gb // 11 // --- /// SPCC622.12c // |||NADP-specific glutamate dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.95460265175889 -2.19511661978973 -1.09223789737962 1.33329734560543 1.04730892682267 Max fold change below threshold 4 2.95460265175889 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774177_at YNL144C.S1 Hypothetical protein 2.95454907961774 2966.52038574219 1253.30590820313 --- --- 5739 // mitochondrion // inferred from direct assay --- 1222.97473144531 3613.3388671875 2319.70190429688 1283.63708496094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL144C /GEN=MFA2 /DB_XREF=GI:6324185 /SEG=NC_001146:-352820,355042 /DEF=Hypothetical ORF /NOTE=Ynl144cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005088 // YNL144C SGDID:S0005088, Chr XIV from 355042-352820, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019920 // cdna:Genscan chromosome:SGD1:XIV:352820:355042:-1 // ensembl // 11 // --- /// GENEFINDER00000020590 // cdna:GeneFinder chromosome:SGD1:XIV:352820:355042:-1 // ensembl // 11 // --- /// YNL144C // cdna:known chromosome:SGD1:XIV:352820:355042:-1 gene:YNL144C // ensembl // 11 // --- YNL144W-A // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene -1.00857498366627 2.95454907961774 1.07050270152274 1.89677010051994 1.04960229508907 Max fold change below threshold 4 2.95454907961774 Max fold change at or above threshold -0.790807649436982 1.34047701519311 0.187050815652438 -0.736720181408569 2109.91314697266 1121.56023801591 0.531567017166155 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770166_at YHR097C.S1 Hypothetical protein 2.9534290377739 2358.26538085938 2106.66467285156 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 2125.10864257813 2494.20434570313 2222.32641601563 2088.220703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR097C /GEN=HXT5 /DB_XREF=GI:6321889 /SEG=NC_001140:-297387,298611 /DEF=Hypothetical ORF /NOTE=Yhr097cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001139 // YHR097C SGDID:S0001139, Chr VIII from 298611-298487,298362-297387, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016636 // cdna:Genscan chromosome:SGD1:VIII:297387:298082:-1 // ensembl // 11 // --- /// GENEFINDER00000020231 // cdna:GeneFinder chromosome:SGD1:VIII:297387:298082:-1 // ensembl // 11 // --- /// YHR097C // cdna:known chromosome:SGD1:VIII:297387:298611:-1 gene:YHR097C // ensembl // 11 // --- --- No cerevisiae_gene -2.9534290377739 1.17368321587419 1.15154774371025 1.04574720157345 -1.01766477048998 Max fold change below threshold 4 2.9534290377739 Max fold change at or above threshold -0.585264763105226 1.42689977379412 -0.0552717168274591 -0.786363293861438 2232.46502685547 183.432167875177 0.0821657520581858 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770073_s_at YMR322C.S1 Possible chaperone and cysteine protease with similarity to E. coli Hsp31 and S. cerevisiae Hsp31p, Hsp32p, and Hsp33p; member of the DJ-1/ThiJ/PfpI superfamily; may have a role in pyridoxine metabolism /// Possible chaperone and cysteine protease with similarity to E. coli Hsp31 and S. cerevisiae Hsp31p, Hsp33p, and Sno4p; member of the DJ-1/ThiJ/PfpI superfamily, which includes human DJ-1 involved in Parkinson's disease /// Possible chaperone and cysteine protease with similarity to E. coli Hsp31 and S. cerevisiae Hsp32p, Hsp33p, and Sno4p; member of the DJ-1/ThiJ/PfpI superfamily, which includes human DJ-1 involved in Parkinson's disease 2.95266194814832 5427.00537109375 5181.4345703125 SNO4 /// HSP32 /// HSP33 8614 // pyridoxine metabolism // RCA --- 8234 // cysteine-type peptidase activity // inferred from sequence similarity /// 51082 // unfolded protein binding // inferred from sequence similarity 5782.8857421875 6228.4541015625 4625.556640625 4579.9833984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR322C /GEN=SNO4 /DB_XREF=GI:6323984 /SEG=NC_001145:-918364,919077 /DEF=Possible chaperone and cysteine protease with similarity to E. coli Hsp31 and S. cerevisiae Hsp31p, Hsp32p, and Hsp33p; member of the DJ-1/ThiJ/PfpI superfamily; may have a role in pyridoxine metabolism /NOTE=Sno4p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: chaperone activity [goid GO:0003754] [evidence ISS] [pmid 14745011]; go_function: cysteine-type peptidase activity [goid GO:0008234] [evidence ISS] [pmid 14745011]; go_process: pyridoxine metabolism [goid GO:0008614] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0004941 // SNO4 SGDID:S0004941, Chr XIII from 919077-918364, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0005918 // HSP33 SGDID:S0005918, Chr XV from 1079254-1078541, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0006201 // HSP32 SGDID:S0006201, Chr XVI from 11887-12600, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000021955 // cdna:GeneFinder chromosome:SGD1:XIII:917577:919077:-1 // ensembl // 9 // --- /// GENSCAN00000018988 // cdna:Genscan chromosome:SGD1:XIII:918364:919077:-1 // ensembl // 11 // --- /// GENSCAN00000017835 // cdna:Genscan chromosome:SGD1:XV:1078541:1079254:-1 // ensembl // 11 // --- /// GENSCAN00000016969 // cdna:Genscan chromosome:SGD1:XVI:11887:12600:1 // ensembl // 11 // --- /// YMR322C // cdna:known chromosome:SGD1:XIII:918364:919077:-1 gene:YMR322C // ensembl // 11 // --- /// YOR391C // cdna:known chromosome:SGD1:XV:1078541:1079254:-1 gene:YOR391C // ensembl // 11 // --- /// YPL280W // cdna:known chromosome:SGD1:XVI:11887:12600:1 gene:YPL280W // ensembl // 11 // --- --- No cerevisiae_gene -2.95266194814832 1.0770494834654 -1.10521291774027 -1.25020320611751 -1.2626433851617 Max fold change below threshold 4 2.95266194814832 Max fold change at or above threshold 0.576464221391674 1.11306874309656 -0.817324219668667 -0.872208744819571 5304.21997070313 830.347753983415 0.156544743349576 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778190_at YGL099W.S1 Putative GTPase involved in 60S ribosomal subunit biogenesis; required for the release of Nmd3p from 60S subunits in the cytoplasm 2.95258406879184 224.993835449219 581.088806152344 LSG1 54 // ribosome-nucleus export // inferred from mutant phenotype /// 54 // ribosome-nucleus export // inferred from physical interaction /// 747 // conjugation with cellular fusion // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 3924 // GTPase activity // inferred from sequence similarity 538.592224121094 182.413848876953 267.573822021484 623.585388183594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL099W /GEN=LSG1 /DB_XREF=GI:6321339 /SEG=NC_001139:+314632,316554 /DEF=Killer toxin REsistant /NOTE=Lsg1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12773575]; go_function: GTPase activity [goid GO:0003924] [evidence ISS] [pmid 12773575]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IMP] [pmid 10669874]; go_process: ribosome-nucleus export [goid GO:0000054] [evidence IMP,IPI] [pmid 12773575]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 10669874] --- --- --- --- --- --- S0003067 // LSG1 SGDID:S0003067, Chr VII from 314634-316556, Verified ORF // sgd // 11 // --- /// GENSCAN00000019277 // cdna:Genscan chromosome:SGD1:VII:314634:316556:1 // ensembl // 11 // --- /// GENEFINDER00000021521 // cdna:GeneFinder chromosome:SGD1:VII:314634:316556:1 // ensembl // 11 // --- /// YGL099W // cdna:known chromosome:SGD1:VII:314634:316556:1 gene:YGL099W // ensembl // 11 // --- --- No cerevisiae_gene 1.24191145014984 -2.95258406879184 1.03715968244489 -2.01287338220197 1.15780614768659 Max fold change below threshold 4 2.95258406879184 Max fold change at or above threshold 0.641273285873204 -1.04375921081221 -0.640878710088287 1.04336463502729 403.041320800781 211.377748467623 0.524456767975175 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777923_at YDR042C.S1 Hypothetical protein 2.95196779630058 45.5764045715332 116.596912384033 --- --- --- --- 114.237777709961 52.4539527893066 38.6988563537598 118.956047058105 0.000244141003349796 0.000244141003349796 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR042C /GEN=RSM10 /DB_XREF=GI:6320247 /SEG=NC_001136:-540596,541198 /DEF=Hypothetical ORF /NOTE=Ydr042cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002449 // YDR042C SGDID:S0002449, Chr IV from 541199-540597, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDR042C // cdna:known chromosome:SGD1:IV:540597:541199:-1 gene:YDR042C // ensembl // 11 // --- --- No cerevisiae_gene 1.60067904535077 -2.17786785619042 -1.14055189510993 -2.95196779630058 1.04130218079105 Max fold change below threshold 4 2.95196779630058 Max fold change at or above threshold 0.800147737070866 -0.691089628147846 -1.02308774890545 0.914029639982434 81.0866584777832 41.4312478762177 0.510950243282863 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770861_at YJL109C.S1 Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA 2.95178510818813 438.247711181641 540.543853759766 UTP10 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 5739 // mitochondrion // inferred from direct assay 30515 // snoRNA binding // inferred from physical interaction 521.851440429688 466.364379882813 410.131042480469 559.236267089844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL109C /GEN=UTP10 /DB_XREF=GI:6322352 /SEG=NC_001142:-211917,217226 /DEF=Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA /NOTE=Utp10p; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: snoRNA binding [goid GO:0030515] [evidence IPI] [pmid 12068309]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP,IPI] [pmid 12068309] --- --- --- --- --- --- S0003645 // UTP10 SGDID:S0003645, Chr X from 217226-211917, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000024053 // cdna:Genscan chromosome:SGD1:X:211917:217226:-1 // ensembl // 10 // --- /// GENEFINDER00000024336 // cdna:GeneFinder chromosome:SGD1:X:211917:217226:-1 // ensembl // 10 // --- /// YJL109C // cdna:known chromosome:SGD1:X:211917:217226:-1 gene:YJL109C // ensembl // 10 // --- --- No cerevisiae_gene 2.95178510818813 -1.11897791285179 -1.0551860799093 -1.27240171159329 1.07163883006507 Max fold change below threshold 4 2.95178510818813 Max fold change at or above threshold 0.497956286808963 -0.353363093953041 -1.21613235049172 1.0715391576358 489.395782470703 65.1777250709472 0.133179989295983 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779333_at YLR190W.S1 Phosphorylated protein of the mitochondrial outer membrane, localizes only to mitochondria of the bud; interacts with Myo2p to mediate mitochondrial distribution to buds; mRNA is targeted to the bud via the transport system involving She2p 2.94999384863338 257.421951293945 782.119873046875 MMR1 1 // mitochondrion inheritance // inferred from mutant phenotype 131 // incipient bud site // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5741 // mitochondrial outer membrane // inferred from direct assay /// 5933 // bud // inferred from direct assay /// 5935 // bud neck // inferred from direct assay --- 736.883850097656 265.05224609375 249.791656494141 827.355895996094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR190W /GEN=MMR1 /DB_XREF=GI:6323219 /SEG=NC_001144:+535216,536691 /DEF=Phosphorylated protein of unknown function, localized to small buds, bud neck, and incipient bud sites; mRNA is targeted to the bud via the mRNA transport system involving She2p /NOTE=Mmr1p; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 13679573]; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 13679573]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 13679573]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004180 // MMR1 SGDID:S0004180, Chr XII from 535216-536691, Verified ORF // sgd // 11 // --- /// GENSCAN00000017968 // cdna:Genscan chromosome:SGD1:XII:535231:536691:1 // ensembl // 11 // --- /// GENEFINDER00000024855 // cdna:GeneFinder chromosome:SGD1:XII:535231:536691:1 // ensembl // 11 // --- /// YLR190W // cdna:known chromosome:SGD1:XII:535216:536691:1 gene:YLR190W // ensembl // 11 // --- --- No cerevisiae_gene 1.06890555495045 -2.78014565414027 -1.19182699872872 -2.94999384863338 1.12277653511669 Max fold change below threshold 4 2.94999384863338 Max fold change at or above threshold 0.711282721825625 -0.834482679090784 -0.884477828208573 1.00767778547373 519.77091217041 305.241405794295 0.587261423536951 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774613_at YIL154C.S1 Transcriptional activator involved in maintenance of ion homeostasis and protection against DNA damage caused by bleomycin and other oxidants, contains a C-terminal leucine-rich repeat 2.94918258492386 1501.716796875 637.096343994141 IMP2' 5975 // carbohydrate metabolism // inferred from mutant phenotype /// 6281 // DNA repair // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 3713 // transcription coactivator activity // inferred from direct assay 608.798400878906 1207.97595214844 1795.45764160156 665.394287109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL154C /GEN=IMP2' /DB_XREF=GI:6322037 /SEG=NC_001141:-53981,55021 /DEF=Transcriptional activator involved in maintenance of ion homeostasis and protection against DNA damage caused by bleomycin and other oxidants, contains a C-terminal leucine-rich repeat /NOTE=Imp2'p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: transcription coactivator activity [goid GO:0003713] [evidence IDA] [pmid 8628275]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 8628275]; go_process: carbohydrate metabolism [goid GO:0005975] [evidence IMP] [pmid 1561839] --- --- --- --- --- --- S0001416 // IMP2' SGDID:S0001416, Chr IX from 55021-53981, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016359 // cdna:Genscan chromosome:SGD1:IX:53981:55021:-1 // ensembl // 11 // --- /// GENEFINDER00000019114 // cdna:GeneFinder chromosome:SGD1:IX:53981:54919:-1 // ensembl // 11 // --- /// YIL154C // cdna:known chromosome:SGD1:IX:53981:55021:-1 gene:YIL154C // ensembl // 11 // --- --- No cerevisiae_gene 1.23530157191004 1.98419698607045 -1.10871138288015 2.94918258492386 1.09296326361693 Max fold change below threshold 4 2.94918258492386 Max fold change at or above threshold -0.830976322044223 0.249990952777957 1.30985789791057 -0.7288725286443 1069.40657043457 554.297586268831 0.518322592728773 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779539_at YLR083C.S1 Protein whose 24kDa cleavage product is found in endosome-enriched membrane fractions, predicted to be a transmembrane protein 2.94894233977411 450.716018676758 1181.74615478516 EMP70 6810 // transport // inferred from sequence similarity 5624 // membrane fraction // traceable author statement /// 5768 // endosome // traceable author statement 5215 // transporter activity // inferred from sequence similarity 1147.14855957031 389.003387451172 512.428649902344 1216.34375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR083C /GEN=EMP70 /DB_XREF=GI:6323112 /SEG=NC_001144:-294092,296095 /DEF=Protein whose 24kDa cleavage product is found in endosome-enriched membrane fractions, predicted to be a transmembrane protein /NOTE=Emp70p; go_component: endosome [goid GO:0005768] [evidence TAS] [pmid 9729438]; go_component: membrane fraction [goid GO:0005624] [evidence TAS] [pmid 9729438]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 9729438]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 9729438] --- --- --- --- scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 3.79999995231628 S0004073 // span:10-29,305-327,373-395,402-424,439-461,474-496,526-548,560-582,597-616,629-651 // numtm:10 S0004073 // EMP70 SGDID:S0004073, Chr XII from 296095-294092, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017882 // cdna:Genscan chromosome:SGD1:XII:294092:296083:-1 // ensembl // 11 // --- /// GENEFINDER00000024734 // cdna:GeneFinder chromosome:SGD1:XII:294092:296083:-1 // ensembl // 11 // --- /// YLR083C // cdna:known chromosome:SGD1:XII:294092:296095:-1 gene:YLR083C // ensembl // 11 // --- --- No cerevisiae_gene 1.32645429750503 -2.94894233977411 -1.0785354320768 -2.23865031705181 1.06031929330549 Max fold change below threshold 4 2.94894233977411 Max fold change at or above threshold 0.776810179891865 -1.00289302672581 -0.713159155905276 0.939242002739222 816.231086730957 425.995283539436 0.521905242846811 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775067_at SPAC9.13c.S1 --- 2.94684256650592 --- --- --- --- 9.19473934173584 3.55506038665771 11.3543910980225 5.87660789489746 0.274170011281967 0.334473013877869 0.129638999700546 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9.13c /GEN=cwf16 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC9.13c // |cwf16|SPAPJ735.01c|conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.19730394838079 -2.58638063540188 -2.94684256650592 1.23487906247475 -1.56463380000552 Max fold change below threshold 4 2.94684256650592 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1777742_at SPAC9.05.S1 --- 2.94657160006516 --- --- --- --- 2.77418208122253 3.32981157302856 0.974115252494812 2.57580208778381 0.466064006090164 0.533936023712158 0.780517995357513 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9.05 /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPAC9.05 // |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.94657160006516 1.20028587725618 -1.86880845214586 -2.84789923380992 -1.07701678416194 Max fold change below threshold 3 2.94657160006516 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770243_at YLR052W.S1 Subunit of the INO80 chromatin remodeling complex 2.94454126437405 148.444671630859 416.777252197266 IES3 6338 // chromatin remodeling // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 31011 // INO80 complex // inferred from physical interaction --- 399.451446533203 135.658294677734 161.231048583984 434.103057861328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR052W /GEN=IES3 /DB_XREF=GI:6323081 /SEG=NC_001144:+247202,247954 /DEF=Subunit of the INO80 chromatin remodeling complex /NOTE=Ies3p; go_component: chromatin remodeling complex [goid GO:0016585] [evidence IPI] [pmid 12887900]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin remodeling [goid GO:0006338] [evidence IPI] [pmid 12887900] --- --- --- --- --- --- S0004042 // IES3 SGDID:S0004042, Chr XII from 247202-247954, Verified ORF // sgd // 11 // --- /// GENSCAN00000017860 // cdna:Genscan chromosome:SGD1:XII:247202:247954:1 // ensembl // 11 // --- /// GENEFINDER00000024895 // cdna:GeneFinder chromosome:SGD1:XII:247202:247954:1 // ensembl // 11 // --- /// YLR052W // cdna:known chromosome:SGD1:XII:247202:247954:1 gene:YLR052W // ensembl // 11 // --- --- No cerevisiae_gene -1.59585188057103 -2.94454126437405 1.28764292767524 -2.47750945020451 1.0867479931012 Max fold change below threshold 4 2.94454126437405 Max fold change at or above threshold 0.749379300470178 -0.942509673207451 -0.778493814356569 0.971624187093842 282.610961914063 155.91634909829 0.551699580378278 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775916_at YNL193W.S1 Hypothetical protein 2.94376445275332 1464.62280273438 588.051300048828 --- --- --- --- 562.752014160156 1656.609375 1272.63623046875 613.3505859375 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL193W /GEN=WHI3 /DB_XREF=GI:6324136 /SEG=NC_001146:+274367,276043 /DEF=Hypothetical ORF /NOTE=Ynl193wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005137 // YNL193W SGDID:S0005137, Chr XIV from 274367-276043, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019885 // cdna:Genscan chromosome:SGD1:XIV:274367:276043:1 // ensembl // 11 // --- /// GENEFINDER00000020708 // cdna:GeneFinder chromosome:SGD1:XIV:274367:276043:1 // ensembl // 11 // --- /// YNL193W // cdna:known chromosome:SGD1:XIV:274367:276043:1 gene:YNL193W // ensembl // 11 // --- --- No cerevisiae_gene 1.737103244434 2.94376445275332 -1.00900662608226 2.26145122264558 1.0899127333251 Max fold change below threshold 4 2.94376445275332 Max fold change at or above threshold -0.87433844365241 1.18871680111158 0.464529317411224 -0.778907674870392 1026.3370513916 530.212345799291 0.516606455043575 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775003_at YPL041C.S1 Hypothetical protein 2.94374615117162 60.0868072509766 71.7602310180664 --- --- --- --- 59.6413726806641 52.7605285644531 67.4130859375 83.8790893554688 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL041C /GEN=SSN3 /DB_XREF=GI:6325216 /SEG=NC_001148:-475113,475736 /DEF=Hypothetical ORF /NOTE=Ypl041cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005962 // span:96-118,174-196 // numtm:2 S0005962 // YPL041C SGDID:S0005962, Chr XVI from 475738-475115, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YPL041C // cdna:known chromosome:SGD1:XVI:475115:475738:-1 gene:YPL041C // ensembl // 11 // --- --- No cerevisiae_gene 2.94374615117162 -1.13041651218117 -1.1992703108374 1.13030741761173 1.40639099312117 Max fold change below threshold 4 2.94374615117162 Max fold change at or above threshold -0.469396292482893 -0.98352673197924 0.111299082226009 1.34162394223612 65.9235191345215 13.3834598919129 0.203014949256623 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779806_at YOR255W.S1 Protein of unknown function required for the construction of the outer spore wall layers 2.94222544468539 75.9101867675781 29.0876054763794 OSW1 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 5628 // prospore membrane // inferred from direct assay --- 29.1105403900146 85.649772644043 66.1706008911133 29.0646705627441 0.00585938012227416 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR255W /GEN=SEC63 /DB_XREF=GI:6324829 /SEG=NC_001147:+807270,808106 /DEF=Non-essential protein required for construction of the outer spore wall layers /NOTE=Yor255wp --- --- --- --- --- --- S0005781 // OSW1 SGDID:S0005781, Chr XV from 807270-808106, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017683 // cdna:Genscan chromosome:SGD1:XV:807453:808106:1 // ensembl // 11 // --- /// YOR255W // cdna:known chromosome:SGD1:XV:807270:808106:1 gene:YOR255W // ensembl // 11 // --- GENEFINDER00000022634 // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene -1.65551984685611 2.94222544468539 1.71633449648209 2.27308047204135 -1.00157819876786 Max fold change below threshold 4 2.94222544468539 Max fold change at or above threshold -0.830008752512807 1.17646225250371 0.48518308641271 -0.831636586403616 52.4988961219788 28.1784446985132 0.536743565675018 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1775569_at YML038C.S1 Putative nucleotide sugar transporter, has similarity to Vrg4p 2.94212574017904 394.261352539063 987.756164550781 YMD8 15780 // nucleotide-sugar transport // inferred from sequence similarity 30137 // COPI-coated vesicle // inferred from direct assay 5338 // nucleotide-sugar transporter activity // inferred from sequence similarity 925.89697265625 314.703399658203 473.819305419922 1049.61535644531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML038C /GEN=YMD8 /DB_XREF=GI:6323603 /SEG=NC_001145:-202775,204103 /DEF=similar to vanadate resistance protein Gog5 /NOTE=Ymd8p; go_component: COPI-coated vesicle [goid GO:0030137] [evidence IDA] [pmid 14562095]; go_function: nucleotide-sugar transporter activity [goid GO:0005338] [evidence ISS] [pmid 9395539]; go_process: nucleotide-sugar transport [goid GO:0015780] [evidence ISS] [pmid 9395539] --- --- --- --- --- S0004502 // span:5-24,34-56,77-96,106-128,135-152,167-189,301-323,328-350,357-376 // numtm:9 S0004502 // YMD8 SGDID:S0004502, Chr XIII from 204103-202775, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018686 // cdna:Genscan chromosome:SGD1:XIII:202775:204025:-1 // ensembl // 10 // --- /// YML038C // cdna:known chromosome:SGD1:XIII:202775:204103:-1 gene:YML038C // ensembl // 10 // --- --- No cerevisiae_gene -1.05401901874673 -2.94212574017904 1.19385010945362 -1.9541140727385 1.13362003272798 Max fold change below threshold 4 2.94212574017904 Max fold change at or above threshold 0.666546802707002 -1.06784895426286 -0.616322688261987 1.01762483981785 691.008758544922 352.395680479439 0.509972813110921 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770168_s_at YOR390W.S1 Hypothetical protein /// Hypothetical protein 2.94212002343258 279.445922851563 145.367282867432 --- --- --- --- 122.564796447754 198.29150390625 360.600341796875 168.169769287109 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR390W /GEN=FDH1 /DB_XREF=GI:6324966 /SEG=NC_001147:+1076780,1077907 /DEF=Hypothetical ORF /NOTE=Yor390wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005917 // span:12-29,44-66,79-101,126-148,214-236,241-258,271-290,310-332,339-361 // numtm:9 /// S0006200 // span:12-29,44-66,79-101,126-148,214-236,241-258,271-290,310-332,339-361 // numtm:9 S0005917 // YOR390W SGDID:S0005917, Chr XV from 1076780-1077907, Uncharacterized ORF // sgd // 11 // --- /// S0006200 // YPL279C SGDID:S0006200, Chr XVI from 14355-13228, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YOR390W // cdna:known chromosome:SGD1:XV:1076780:1077907:1 gene:YOR390W // ensembl // 11 // --- /// YPL279C // cdna:known chromosome:SGD1:XVI:13228:14355:-1 gene:YPL279C // ensembl // 11 // --- --- No cerevisiae_gene 2.9238398230966 1.61785039141134 1.83166850432682 2.94212002343258 1.37208867603999 Max fold change below threshold 4 2.94212002343258 Max fold change at or above threshold -0.86733106634365 -0.136266893060442 1.43065949752773 -0.427061538123643 212.406602859497 103.584213569662 0.487669461189871 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770439_at SPBC14F5.09c.S1 --- 2.94166746362934 --- --- --- --- 5.1106333732605 12.8392724990845 15.0337839126587 6.11231184005737 0.334473013877869 0.24609400331974 0.129638999700546 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14F5.09c /GEN=ade8 /DEF=adenylosuccinate lyase --- --- --- --- --- --- SPBC14F5.09c // |ade8||adenylosuccinate lyase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.18277086428853 2.5122663985762 1.48769478739757 2.94166746362934 1.19599888969492 Max fold change below threshold 4 2.94166746362934 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772800_at SPAC26F1.07.S1 --- 2.9411521649058 --- --- --- --- 7.40263795852661 2.51691770553589 3.51575994491577 6.14775943756104 0.194580003619194 0.601073980331421 0.466064006090164 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26F1.07 /DEF=aldoketo reductase --- --- --- --- --- --- SPAC26F1.07 // |||aldo/keto reductase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.18509111139926 -2.9411521649058 1.08909239144403 -2.10555842108383 -1.20411965264916 Max fold change below threshold 4 2.9411521649058 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776348_at YDR021W.S1 Nucleolar protein required for maturation of 18S rRNA, member of the eIF4A subfamily of DEAD-box ATP-dependent RNA helicases 2.94036926854333 105.915550231934 341.61328125 FAL1 6365 // 35S primary transcript processing // traceable author statement 5730 // nucleolus // traceable author statement 4004 // ATP-dependent RNA helicase activity // traceable author statement 310.498077392578 106.232772827148 105.598327636719 372.728485107422 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR021W /GEN=FAL1 /DB_XREF=GI:6320224 /SEG=NC_001136:+486800,487999 /DEF=Nucleolar protein required for maturation of 18S rRNA, member of the eIF4A subfamily of DEAD-box ATP-dependent RNA helicases /NOTE=Fal1p; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 10690410]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0002428 // FAL1 SGDID:S0002428, Chr IV from 486800-487999, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023467 // cdna:GeneFinder chromosome:SGD1:IV:486800:487999:1 // ensembl // 11 // --- /// GENSCAN00000025113 // cdna:Genscan chromosome:SGD1:IV:486800:487999:1 // ensembl // 11 // --- /// YDR021W // cdna:known chromosome:SGD1:IV:486800:487999:1 gene:YDR021W // ensembl // 11 // --- --- No cerevisiae_gene 1.14367804060406 -2.9228087446968 -1.03562716285781 -2.94036926854333 1.20042123364314 Max fold change below threshold 4 2.94036926854333 Max fold change at or above threshold 0.626545197905913 -0.849023148191708 -0.853606242919046 1.07608419320484 223.764415740967 138.431611863756 0.618648909860656 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777048_at YHR179W.S1 Widely conserved NADPH oxidoreductase containing flavin mononucleotide (FMN), homologous to Oye3p with slight differences in ligand binding and catalytic properties; may be involved in sterol metabolism 2.94035871121476 4985.6103515625 1756.30346679688 OYE2 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 3959 // NADPH dehydrogenase activity // inferred from direct assay /// 3959 // NADPH dehydrogenase activity // inferred from sequence similarity 1770.23303222656 5205.1201171875 4766.1005859375 1742.37390136719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR179W /GEN=OYE2 /DB_XREF=GI:6321973 /SEG=NC_001140:+462500,463702 /DEF=Widely conserved NADPH oxidoreductase containing flavin mononucleotide (FMN), homologous to Oye3p with slight differences in ligand binding and catalytic properties; may be involved in sterol metabolism /NOTE=Oye2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: NADPH dehydrogenase activity [goid GO:0003959] [evidence IDA,ISS] [pmid 8454584]; go_process: biological_process unknown [goid GO:0000004] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence NAS] [pmid 7836424] --- --- --- --- --- --- S0001222 // OYE2 SGDID:S0001222, Chr VIII from 462501-463703, Verified ORF // sgd // 11 // --- /// GENSCAN00000016703 // cdna:Genscan chromosome:SGD1:VIII:462501:463703:1 // ensembl // 11 // --- /// GENEFINDER00000020233 // cdna:GeneFinder chromosome:SGD1:VIII:462501:463703:1 // ensembl // 11 // --- /// YHR179W // cdna:known chromosome:SGD1:VIII:462501:463703:1 gene:YHR179W // ensembl // 11 // --- --- No cerevisiae_gene 2.17337053620222 2.94035871121476 -1.1624232913196 2.69235772871258 -1.0159891805298 Max fold change below threshold 4 2.94035871121476 Max fold change at or above threshold -0.854598807658826 0.979228031257177 0.744843092451036 -0.869472316049387 3370.95690917969 1873.0705713694 0.555649514910354 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769617_at YBR157C.S1 Protein of unknown function; null mutation does not confer any obvious defects in growth, spore germination, viability, or carbohydrate utilization 2.94004902439796 38.6616792678833 71.3812675476074 ICS2 --- --- --- 60.9767684936523 50.2803077697754 27.0430507659912 81.7857666015625 0.00195312988944352 0.00195312988944352 0.00805663969367743 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR157C /GEN=ICS2 /DB_XREF=GI:41629678 /SEG=NC_001134:-553499,554266 /DEF=Protein of unknown function; null mutation does not confer any obvious defects in growth, spore germination, viability, or carbohydrate utilization /NOTE=Ics2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000361 // ICS2 SGDID:S0000361, Chr II from 554304-553537, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021265 // cdna:Genscan chromosome:SGD1:II:553537:554304:-1 // ensembl // 11 // --- /// YBR157C // cdna:known chromosome:SGD1:II:553537:554304:-1 gene:YBR157C // ensembl // 11 // --- --- No cerevisiae_gene 2.94004902439796 -1.2127365801509 2.43813262862586 -2.25480361004001 1.34126108388437 Max fold change below threshold 4 2.94004902439796 Max fold change at or above threshold 0.261403092396469 -0.2081098151227 -1.22809131930967 1.1747980420359 55.0214734077454 22.7820376236201 0.414057207352304 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1777444_at YMR174C.S1 Cytoplasmic proteinase A inhibitor, dependent on Pbs2p and Hog1p protein kinases for osmotic induction; intrinsically unstructured, N-terminal half becomes ordered in the active site of proteinase A upon contact 2.9394138710979 677.362518310547 701.965240478516 PAI3 7039 // vacuolar protein catabolism // inferred from mutant phenotype 5737 // cytoplasm // traceable author statement 4866 // endopeptidase inhibitor activity // inferred from mutant phenotype 710.542663574219 702.221862792969 652.503173828125 693.387817382813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR174C /GEN=PAI3 /DB_XREF=GI:6323828 /SEG=NC_001145:-610158,610364 /DEF=Cytoplasmic inhibitor of proteinase Pep4p /NOTE=Pai3p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 2037077]; go_function: endopeptidase inhibitor activity [goid GO:0004866] [evidence IMP] [pmid 2037077]; go_process: vacuolar protein catabolism [goid GO:0007039] [evidence IMP] [pmid 2037077] --- --- --- --- --- --- S0004786 // PAI3 SGDID:S0004786, Chr XIII from 610364-610158, reverse complement, Verified ORF // sgd // 11 // --- /// YMR174C // cdna:known chromosome:SGD1:XIII:610158:610364:-1 gene:YMR174C // ensembl // 11 // --- --- No cerevisiae_gene -2.9394138710979 -1.01184924768385 -1.0934802674842 -1.08894897691545 -1.02474062243573 Max fold change below threshold 4 2.9394138710979 Max fold change at or above threshold 0.810984602864375 0.487783727802855 -1.44341546838016 0.144647137712931 689.663879394531 25.7449822178426 0.0373297529231843 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-TagJ-3_at AFFX-r2-TagJ-3 --- 2.93811674871972 --- --- --- --- 1.09789907932281 1.68827128410339 0.561433017253876 0.373674422502518 0.805419981479645 0.870360970497131 0.932372987270355 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Clone 76F7, synthetic insert (960 bp)+ poly A tail (21 bp), 3 prime target sequence 361-960 --- --- --- --- --- --- AFFX-r2-TagJ-3 // --- // gb // --- // --- /// AFFX-r2-TagJ-3 // --- // unknown // --- // --- /// AFFX-r2-TagJ-3 // --- // unknown // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-TagJ-3 // --- // unknown // --- // --- /// AFFX-r2-TagJ-3 // --- // affx // --- // --- /// AFFX-r2-TagJ-3 // --- // affx // --- // --- /// AFFX-r2-TagJ-3 // --- // affx // --- // --- /// AFFX-r2-TagJ-3 // --- // affx // --- // --- /// AFFX-r2-TagJ-3 // --- // affx // --- // --- /// AFFX-r2-TagJ-3 // --- // affx // --- // --- /// AFFX-r2-TagJ-3 // --- // affx // --- // --- /// AFFX-r2-TagJ-3 // --- // affx // --- // --- /// AFFX-r2-TagJ-3 // --- // affx // --- // --- /// AFFX-r2-TagJ-3 // --- // affx // --- // --- /// AFFX-r2-TagJ-3 // --- // affx // --- // --- /// AFFX-r2-TagJ-3 // --- // affx // --- // --- --- AFFX_control No 1.58760033420758 1.53772902801296 -1.8762629591141 -1.95552994851094 -2.93811674871972 Max fold change below threshold 0 2.93811674871972 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770793_at YLR454W.S1 The authentic, non-tagged protein was localized to the mitochondria 2.93768897851048 778.709503173828 1357.31079101563 --- --- 5739 // mitochondrion // inferred from direct assay --- 1337.32983398438 750.321044921875 807.097961425781 1377.29174804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR454W /GEN=RIF2 /DB_XREF=GI:6323487 /SEG=NC_001144:+1043995,1051881 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ylr454wp --- --- --- hanks // 1.1.1 // AGC group; AGC I Cyclic nucleotide regulated protein kinase (PKA & PKG); cAPKa // 1.6 scop // a.4.5.Plant O-methyltransferase, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Plant O-methyltransferase, N-terminal domain // 0.540000021457672 --- S0004446 // FMP27 SGDID:S0004446, Chr XII from 1043995-1051881, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018166 // cdna:Genscan chromosome:SGD1:XII:1043998:1051926:1 // ensembl // 11 // --- /// GENEFINDER00000024812 // cdna:GeneFinder chromosome:SGD1:XII:1046821:1051926:1 // ensembl // 11 // --- /// YLR454W // cdna:known chromosome:SGD1:XII:1043995:1051881:1 gene:YLR454W // ensembl // 11 // --- --- No cerevisiae_gene -2.93768897851048 -1.78234349554146 1.03521366528999 -1.65696098602691 1.02988186836709 Max fold change below threshold 4 2.93768897851048 Max fold change at or above threshold 0.803325503014337 -0.947601568799344 -0.778247647677373 0.92252371346238 1068.01014709473 335.255990104975 0.313907120655137 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777925_at YLL063C.S1 Acetyltransferase; catalyzes trichothecene 3-O-acetylation, suggesting a possible role in trichothecene biosynthesis 2.93758132699453 109.490989685059 54.2644805908203 AYT1 19748 // secondary metabolism // inferred from mutant phenotype /// 19748 // secondary metabolism // inferred from sequence similarity --- 45462 // trichothecene 3-O-acetyltransferase activity // inferred from mutant phenotype /// 45462 // trichothecene 3-O-acetyltransferase activity // inferred from sequence similarity 49.5001411437988 73.5712890625 145.410690307617 59.0288200378418 0.0107421996071935 0.00195312988944352 0.00292969006113708 0.00805663969367743 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL063C /GEN=AYT1 /DB_XREF=GI:6322965 /SEG=NC_001144:-14648,16072 /DEF=Acetyltransferase; catalyzes trichothecene 3-O-acetylation, suggesting a possible role in trichothecene biosynthesis /NOTE=Ayt1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: trichothecene 3-O-acetyltransferase activity [goid GO:0045462] [evidence IMP,ISS] [pmid 12478589]; go_process: secondary metabolism [goid GO:0019748] [evidence IMP,ISS] [pmid 12478589] --- --- --- --- --- --- S0003986 // AYT1 SGDID:S0003986, Chr XII from 16072-14648, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017644 // cdna:Genscan chromosome:SGD1:XII:14648:16024:-1 // ensembl // 11 // --- /// GENEFINDER00000024822 // cdna:GeneFinder chromosome:SGD1:XII:14648:16072:-1 // ensembl // 11 // --- /// YLL063C // cdna:known chromosome:SGD1:XII:14648:16072:-1 gene:YLL063C // ensembl // 11 // --- --- No cerevisiae_gene -1.10939110369589 1.48628442995292 -1.43659420350024 2.93758132699453 1.19249801462913 Max fold change below threshold 4 2.93758132699453 Max fold change at or above threshold -0.744373812970692 -0.190968511697604 1.46064800545425 -0.525305680785955 81.8777351379395 43.49641729728 0.531236205105106 PPPMPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1769526_at YDR205W.S1 Member of the cation diffusion facilitator family, localizes to the endoplasmic reticulum and nucleus; mutations affect the cellular distribution of zinc and also confer defects in meiotic recombination between homologous chromatids 2.93755262713214 511.311294555664 1068.65698242188 MSC2 6882 // zinc ion homeostasis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 16020 // membrane // inferred from sequence similarity 15491 // cation:cation antiporter activity // inferred from sequence similarity /// 15491 // cation:cation antiporter activity // inferred from mutant phenotype 1065.81909179688 498.297088623047 524.325500488281 1071.49487304688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR205W /GEN=MSC2 /DB_XREF=GI:37362632 /SEG=NC_001136:+859339,861513 /DEF=Member of the cation diffusion facilitator family, localizes to the endoplasmic reticulum and nucleus; mutations affect the cellular distribution of zinc and also confer defects in meiotic recombination between homologous chromatids /NOTE=Msc2p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11058603]; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 11058603]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11058603]; go_function: cation:cation antiporter activity [goid GO:0015491] [evidence IMP,ISS] [pmid 11058603]; go_process: zinc ion homeostasis [goid GO:0006882] [evidence IMP] [pmid 11058603] --- --- --- --- --- S0002613 // span:57-79,91-113,133-155,175-197,219-241,248-265,297-319,388-405,420-437,450-472,492-514,527-549,564-586 // numtm:13 S0002613 // MSC2 SGDID:S0002613, Chr IV from 859341-861515, Verified ORF // sgd // 11 // --- /// GENSCAN00000025253 // cdna:Genscan chromosome:SGD1:IV:860601:861515:1 // ensembl // 11 // --- /// YDR205W // cdna:known chromosome:SGD1:IV:859341:861515:1 gene:YDR205W // ensembl // 11 // --- --- No cerevisiae_gene -2.93755262713214 -2.13892297613472 -1.44657338064679 -2.032743192548 1.00532527639417 Max fold change below threshold 4 2.93755262713214 Max fold change at or above threshold 0.856716967661808 -0.905952062529406 -0.825110306186335 0.874345401053933 789.98413848877 321.967421820682 0.407561881478535 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770665_at SPAC29A4.12c.S1 --- 2.93674077091536 --- --- --- --- 8.31908416748047 5.3597731590271 9.30712223052979 5.54644870758057 0.466064006090164 0.366210997104645 0.2958984375 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29A4.12c /DEF=hypothetical protein --- --- --- --- --- --- SPAC29A4.12c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.93674077091536 -1.55213362966102 -1.61598798085607 1.11876764835624 -1.4998938250543 Max fold change below threshold 4 2.93674077091536 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770600_at SPBC4F6.18c.S1 --- 2.93638051964919 --- --- --- --- 0.361640691757202 0.22577291727066 0.309835821390152 0.713880240917206 0.904784977436066 0.969726979732513 0.932372987270355 0.82275390625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4F6.18c /GEN=arf1 /DEF=ADP-ribosylation factor (PMID 8212899) --- --- --- --- --- --- L09551 // Schizosaccharomyces pombe ADP-ribosylation factor 1 (ARF1) mRNA, complete cds. // gb // 11 // --- /// SPBC4F6.18c // |arf1||ADP-ribosylation factor|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.93638051964919 -1.60178951545221 2.10269453221882 -1.16720103613138 1.9740041903152 Max fold change below threshold 0 2.93638051964919 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769893_at SPAC4A8.05c.S1 --- 2.93505311012268 --- --- --- --- 0.293505311012268 0.366427600383759 0.310492038726807 0.123747155070305 0.962401986122131 0.995850026607513 0.976073980331421 0.99975597858429 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4A8.05c /GEN=myp2 /DEF=myosin (type II) (heavy chain) (PMID 9398685) --- --- --- --- --- --- SPAC4A8.05c // |myp2|myo3|myosin II heavy chain |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.93505311012268 1.24845304883918 1.94423522836797 1.05787536741994 -2.37181461541898 Max fold change below threshold 0 2.93505311012268 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776417_at YHR175W.S1 Putative low-affinity copper transporter of the vacuolar membrane; mutation confers resistance to toxic copper concentrations, while overexpression confers resistance to copper starvation 2.93504698294142 571.939544677734 1359.56353759766 CTR2 15677 // copper ion import // inferred from genetic interaction /// 15680 // intracellular copper ion transport // inferred from mutant phenotype 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay 5375 // copper ion transporter activity // inferred from mutant phenotype /// 15088 // copper uptake transporter activity // inferred from genetic interaction /// 15088 // copper uptake transporter activity // inferred from sequence similarity 1242.29858398438 423.263610839844 720.615478515625 1476.82849121094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR175W /GEN=CTR2 /DB_XREF=GI:6321969 /SEG=NC_001140:+452870,453439 /DEF=Putative low-affinity copper transporter of the vacuolar membrane; mutation confers resistance to toxic copper concentrations, while overexpression confers resistance to copper starvation /NOTE=Ctr2p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 11523804]; go_function: copper ion transporter activity [goid GO:0005375] [evidence IMP] [pmid 11523804]; go_function: copper uptake transporter activity [goid GO:0015088] [evidence IGI,ISS] [pmid 7499355]; go_process: copper ion import [goid GO:0015677] [evidence IGI] [pmid 7499355]; go_process: intracellular copper ion transport [goid GO:0015680] [evidence IMP] [pmid 11523804] --- --- --- --- --- S0001218 // span:76-98,146-168 // numtm:2 S0001218 // CTR2 SGDID:S0001218, Chr VIII from 452871-453440, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020246 // cdna:GeneFinder chromosome:SGD1:VIII:452958:453440:1 // ensembl // 9 // --- /// YHR175W // cdna:known chromosome:SGD1:VIII:452871:453440:1 gene:YHR175W // ensembl // 11 // --- --- No cerevisiae_gene 1.05240058131594 -2.93504698294142 1.20303903640693 -1.72394102128274 1.18878706798036 Max fold change below threshold 4 2.93504698294142 Max fold change at or above threshold 0.575780438557253 -1.12947849741458 -0.510381699221372 1.0640797580787 965.751541137695 480.29947585512 0.497332342114937 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772576_x_at YAR020C.S1 Part of 23-member seripauperin multigene family, active during alcoholic fermentation, regulated by anaerobiosis, inhibited by oxygen, repressed by heme 2.93495095373899 140.130279541016 229.045654296875 PAU7 --- --- --- 249.030136108398 126.382171630859 153.878387451172 209.061172485352 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR020C /GEN=PAU7 /DB_XREF=GI:6319329 /SEG=NC_001133:-176856,177023 /DEF=similar to Pau3, member of Pau1 family /NOTE=Pau7p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000073 // span:7-26 // numtm:1 S0000073 // PAU7 SGDID:S0000073, Chr I from 177021-176854, reverse complement, Verified ORF // sgd // 11 // --- /// YAR020C // cdna:known chromosome:SGD1:I:176854:177021:-1 gene:YAR020C // ensembl // 11 // --- --- No cerevisiae_gene -2.93495095373899 -1.97045305437362 -1.10509383091192 -1.61835680912253 -1.19118310276313 Max fold change below threshold 4 2.93495095373899 Max fold change at or above threshold 1.17117750813307 -1.05783711414173 -0.558118530292551 0.444778136301209 184.587966918945 55.0234005878218 0.298087689605375 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775132_at YNL282W.S1 Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends 2.93405865692714 206.979705810547 181.02375793457 POP3 6364 // rRNA processing // traceable author statement /// 8033 // tRNA processing // traceable author statement 172 // ribonuclease MRP complex // inferred from direct assay /// 5655 // nucleolar ribonuclease P complex // inferred from direct assay 171 // ribonuclease MRP activity // inferred from direct assay /// 4526 // ribonuclease P activity // inferred from direct assay 168.182723999023 175.852630615234 238.106781005859 193.864791870117 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL282W /GEN=POP3 /DB_XREF=GI:6324047 /SEG=NC_001146:+107685,108272 /DEF=Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends /NOTE=Pop3p; go_component: nucleolar ribonuclease P complex [goid GO:0005655] [evidence IDA] [pmid 9620854]; go_component: ribonuclease MRP complex [goid GO:0000172] [evidence IDA] [pmid 9620854]; go_function: ribonuclease MRP activity [goid GO:0000171] [evidence IDA] [pmid 9620854]; go_function: ribonuclease P activity [goid GO:0004526] [evidence IDA] [pmid 9620854]; go_process: rRNA processing [goid GO:0006364] [evidence TAS] [pmid 9620854]; go_process: tRNA processing [goid GO:0008033] [evidence TAS] [pmid 9620854] --- --- --- --- --- --- S0005226 // POP3 SGDID:S0005226, Chr XIV from 107685-108272, Verified ORF // sgd // 11 // --- /// GENSCAN00000019816 // cdna:Genscan chromosome:SGD1:XIV:107685:108272:1 // ensembl // 11 // --- /// GENEFINDER00000020561 // cdna:GeneFinder chromosome:SGD1:XIV:107685:108272:1 // ensembl // 11 // --- /// YNL282W // cdna:known chromosome:SGD1:XIV:107685:108272:1 gene:YNL282W // ensembl // 11 // --- --- No cerevisiae_gene 2.93405865692714 1.04560460452677 -1.04178954912025 1.41576242401236 1.15270336489046 Max fold change below threshold 4 2.93405865692714 Max fold change at or above threshold -0.824577749872731 -0.579625102183591 1.40857628420499 -0.00437343214866298 194.001731872559 31.311793069265 0.161399554359824 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773779_at YOR060C.S1 Protein required for cell viability 2.93380767363154 249.711311340332 94.8269882202148 --- --- 5634 // nucleus // inferred from direct assay /// 5635 // nuclear membrane // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 5816 // spindle pole body // inferred from direct assay --- 93.627326965332 224.738052368164 274.6845703125 96.0266494750977 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR060C /GEN=ASE1 /DB_XREF=GI:6324634 /SEG=NC_001147:-440391,441164 /DEF=Protein required for cell viability /NOTE=Yor060cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14690591]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14690591]; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 14690591]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005586 // YOR060C SGDID:S0005586, Chr XV from 441164-440391, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017505 // cdna:Genscan chromosome:SGD1:XV:440391:441164:-1 // ensembl // 11 // --- /// YOR060C // cdna:known chromosome:SGD1:XV:440391:441164:-1 gene:YOR060C // ensembl // 11 // --- --- No cerevisiae_gene 2.2903943074601 2.40034677537445 2.37093116880397 2.93380767363154 1.0256263057756 Max fold change below threshold 4 2.93380767363154 Max fold change at or above threshold -0.857383331393279 0.572036111131545 1.11657221690544 -0.831224996643707 172.269149780273 91.7230600776267 0.532440429378202 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776748_at YLR449W.S1 Nuclear protein, putative peptidyl-prolyl cis-trans isomerase (PPIase) with similarity to Fpr3p; overproduction suppresses the growth defect resulting from the absence of E3 ubiquitin-protein ligase Tom1p 2.93345934009745 798.716430664063 905.210632324219 FPR4 --- 5634 // nucleus // inferred from direct assay 3755 // peptidyl-prolyl cis-trans isomerase activity // inferred from sequence similarity 826.029357910156 642.876586914063 954.556274414063 984.391906738281 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR449W /GEN=FPR4 /DB_XREF=GI:6323482 /SEG=NC_001144:+1030829,1032007 /DEF=Nuclear protein, putative peptidyl-prolyl cis-trans isomerase (PPIase) with similarity to Fpr3p; overproduction suppresses the growth defect resulting from the absence of E3 ubiquitin-protein ligase Tom1p /NOTE=Fpr4p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9371805]; go_function: peptidyl-prolyl cis-trans isomerase activity [goid GO:0003755] [evidence ISS] [pmid 10821187]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004441 // FPR4 SGDID:S0004441, Chr XII from 1030829-1032007, Verified ORF // sgd // 10 // --- /// GENSCAN00000018161 // cdna:Genscan chromosome:SGD1:XII:1030829:1032007:1 // ensembl // 10 // --- /// GENEFINDER00000024801 // cdna:GeneFinder chromosome:SGD1:XII:1030829:1032007:1 // ensembl // 10 // --- /// YLR449W // cdna:known chromosome:SGD1:XII:1030829:1032007:1 gene:YLR449W // ensembl // 10 // --- --- No cerevisiae_gene 2.93345934009745 -1.28489569339469 -1.27551505590813 1.15559606359401 1.19171540007825 Max fold change below threshold 4 2.93345934009745 Max fold change at or above threshold -0.166880818514533 -1.34542943268392 0.660162193203664 0.852148057994785 851.963531494141 155.405359434559 0.182408464317733 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779542_at YML069W.S1 Subunit of the heterodimeric FACT complex (Spt16p-Pob3p), which facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilizing and then reassembling nucleosome structure 2.93320639978151 593.288909912109 1563.18804931641 POB3 6261 // DNA-dependent DNA replication // inferred from physical interaction /// 6333 // chromatin assembly or disassembly // inferred from physical interaction /// 6338 // chromatin remodeling // inferred from physical interaction /// 6368 // RNA elongation from RNA polymerase II promoter // inferred from physical interaction 5634 // nucleus // inferred from physical interaction /// 35101 // FACT complex // inferred from genetic interaction /// 35101 // FACT complex // inferred from physical interaction /// 35101 // FACT complex // inferred from direct assay 3682 // chromatin binding // inferred from direct assay 1554.83911132813 530.081726074219 656.49609375 1571.53698730469 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML069W /GEN=POB3 /DB_XREF=GI:6323571 /SEG=NC_001145:+135500,137158 /DEF=binds to catalytic subunit of DNA polymerase alpha (Pol1p) /NOTE=Pob3p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 9199353]; go_function: chromatin binding [goid GO:0003682] [evidence IDA] [pmid 10413469]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence IPI] [pmid 9199353]; go_process: chromatin assembly/disassembly [goid GO:0006333] [evidence IPI] [pmid 9199353]; go_process: chromatin remodeling [goid GO:0006338] [evidence IPI] [pmid 9705338] --- --- --- --- --- --- S0004534 // POB3 SGDID:S0004534, Chr XIII from 135500-137158, Verified ORF // sgd // 11 // --- /// GENSCAN00000018658 // cdna:Genscan chromosome:SGD1:XIII:135500:137158:1 // ensembl // 11 // --- /// GENEFINDER00000021786 // cdna:GeneFinder chromosome:SGD1:XIII:135500:137158:1 // ensembl // 11 // --- /// YML069W // cdna:known chromosome:SGD1:XIII:135500:137158:1 gene:YML069W // ensembl // 11 // --- --- No cerevisiae_gene 1.04667344783117 -2.93320639978151 -1.31035477461801 -2.36839049939606 1.01073929505304 Max fold change below threshold 4 2.93320639978151 Max fold change at or above threshold 0.847461760909767 -0.974698430296072 -0.749916221658275 0.87715289104458 1078.23847961426 562.386002174572 0.521578493818702 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772238_at YEL016C.S1 Hypothetical protein 2.93258616407321 184.805015563965 515.902450561523 --- --- --- --- 489.138824462891 166.794357299805 202.815673828125 542.666076660156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL016C /GEN=GTT3 /DB_XREF=GI:6320821 /SEG=NC_001137:-124737,126218 /DEF=Hypothetical ORF /NOTE=Yel016cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000742 // YEL016C SGDID:S0000742, Chr V from 126218-124737, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016791 // cdna:Genscan chromosome:SGD1:V:124737:125819:-1 // ensembl // 11 // --- /// GENEFINDER00000019751 // cdna:GeneFinder chromosome:SGD1:V:124737:125888:-1 // ensembl // 11 // --- /// YEL016C // cdna:known chromosome:SGD1:V:124737:126218:-1 gene:YEL016C // ensembl // 11 // --- --- No cerevisiae_gene -1.85197371803797 -2.93258616407321 -1.00956371035631 -2.41174074582327 1.10943161638425 Max fold change below threshold 4 2.93258616407321 Max fold change at or above threshold 0.719222915519695 -0.951255700992802 -0.764583227508889 0.996616012981997 350.353733062744 192.965335788645 0.550772883456297 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770535_at YCR042C.S1 TFIID subunit (150 kDa), involved in RNA polymerase II transcription initiation 2.9324540792575 290.143325805664 775.056579589844 TAF2 114 // G1-specific transcription in mitotic cell cycle // inferred from mutant phenotype /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement 5669 // transcription factor TFIID complex // traceable author statement /// 5669 // transcription factor TFIID complex // inferred from direct assay 16251 // general RNA polymerase II transcription factor activity // traceable author statement 781.244140625 266.4130859375 313.873565673828 768.869018554688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR042C /GEN=TAF2 /DB_XREF=GI:6319890 /SEG=NC_001135:-201169,205392 /DEF=TFIID subunit (150 kDa), involved in RNA polymerase II transcription initiation /NOTE=Taf2p; go_component: transcription factor TFIID complex [goid GO:0005669] [evidence TAS] [pmid 9118213]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9118213]; go_process: G1-specific transcription in mitotic cell cycle [goid GO:0000114] [evidence IMP] [pmid 9288741]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 9118213] --- --- --- --- scop // a.4.1.GARP response regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; GARP response regulators // 3.29999995231628 --- S0000638 // TAF2 SGDID:S0000638, Chr III from 205392-201169, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022489 // cdna:Genscan chromosome:SGD1:III:201169:205182:-1 // ensembl // 11 // --- /// GENEFINDER00000023306 // cdna:GeneFinder chromosome:SGD1:III:201169:205389:-1 // ensembl // 11 // --- /// YCR042C // cdna:known chromosome:SGD1:III:201169:205392:-1 gene:YCR042C // ensembl // 11 // --- YCR041W // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene -2.1044415888127 -2.9324540792575 1.05002115640867 -2.48904089437355 -1.01609522788885 Max fold change below threshold 4 2.9324540792575 Max fold change at or above threshold 0.885863767161717 -0.948364417937691 -0.779273317433753 0.841773968209727 532.599952697754 280.679938771957 0.526999556327863 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770452_at YKL069W.S1 Hypothetical protein 2.93223358815269 666.936431884766 258.324409484863 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 247.752853393555 607.403625488281 726.46923828125 268.895965576172 0.00122069998178631 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL069W /GEN=STB6 /DB_XREF=GI:6322781 /SEG=NC_001143:+306930,307472 /DEF=Hypothetical ORF /NOTE=Ykl069wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001552 // YKL069W SGDID:S0001552, Chr XI from 306930-307472, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018366 // cdna:Genscan chromosome:SGD1:XI:306930:307472:1 // ensembl // 11 // --- /// GENEFINDER00000023048 // cdna:GeneFinder chromosome:SGD1:XI:306930:307472:1 // ensembl // 11 // --- /// YKL069W // cdna:known chromosome:SGD1:XI:306930:307472:1 gene:YKL069W // ensembl // 11 // --- --- No cerevisiae_gene 1.53347579632871 2.45165138228871 1.42339920517252 2.93223358815269 1.08533953047569 Max fold change below threshold 4 2.93223358815269 Max fold change at or above threshold -0.891524740095924 0.600662486141775 1.09466444659645 -0.8038021926423 462.630420684814 241.022551172433 0.520982928047958 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772272_at SPCC4B3.08.S1 --- 2.93215247661186 --- --- --- --- 4.59179162979126 1.56601393222809 5.96858263015747 2.43145418167114 0.0375977009534836 0.432372987270355 0.111571997404099 0.274170011281967 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4B3.08 /DEF=sequence orphan --- --- --- --- --- --- SPCC4B3.08 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -2.87439018884511 -2.93215247661186 -1.82753207347792 1.29983742978093 -1.88849605491448 Max fold change below threshold 2 2.93215247661186 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1774764_at YNL129W.S1 Nicotinamide riboside kinase, catalyzes the synthesis of nicotinamide nucleotide (NMN) from nicotinamide riboside; involved in a salvage pathway for NAD+ biosynthesis 2.93134969628354 611.166320800781 248.342903137207 NRK1 46495 // nicotinamide riboside metabolism // inferred from genetic interaction /// 46495 // nicotinamide riboside metabolism // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 816 // nicotinamide riboside kinase activity // inferred from direct assay 235.573989868164 531.782897949219 690.549743652344 261.11181640625 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL129W /GEN=NRK1 /DB_XREF=GI:6324200 /SEG=NC_001146:+381480,382202 /DEF=Nicotinamide riboside kinase, catalyzes the synthesis of nicotinamide nucleotide (NMN) from nicotinamide riboside; involved in a salvage pathway for NAD+ biosynthesis /NOTE=Nrk1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: nicotinamide riboside kinase activity [goid GO:0000816] [evidence IDA] [pmid 15137942]; go_process: nicotinamide riboside metabolism [goid GO:0046495] [evidence IDA,IGI] [pmid 15137942] --- --- --- --- --- --- S0005073 // NRK1 SGDID:S0005073, Chr XIV from 381480-382202, Verified ORF // sgd // 11 // --- /// GENSCAN00000019929 // cdna:Genscan chromosome:SGD1:XIV:381480:382202:1 // ensembl // 11 // --- /// YNL129W // cdna:known chromosome:SGD1:XIV:381480:382202:1 gene:YNL129W // ensembl // 11 // --- --- No cerevisiae_gene -1.02174093170978 2.25739224541226 1.00145259501572 2.93134969628354 1.10840681754543 Max fold change below threshold 4 2.93134969628354 Max fold change at or above threshold -0.884559104016879 0.464773715598574 1.18801096380256 -0.768225575384254 429.754611968994 219.522495691961 0.5108089350948 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774561_at YLR145W.S1 Protein required for cell viability, component of RNase MRP, which is involved in RNA processing in mitochondria 2.93094735904813 71.4180755615234 228.434257507324 RMP1 6364 // rRNA processing // inferred from mutant phenotype /// 8033 // tRNA processing // inferred from direct assay /// 8033 // tRNA processing // inferred from mutant phenotype 172 // ribonuclease MRP complex // inferred from direct assay /// 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 200.90446472168 68.5459136962891 74.2902374267578 255.964050292969 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR145W /GEN=ACF2 /DB_XREF=GI:6323174 /SEG=NC_001144:+432169,432774 /DEF=Protein required for cell viability /NOTE=Ylr145wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14690591]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: tRNA processing [goid GO:0008033] [evidence IDA] [pmid 14690591] --- --- --- --- --- S0004135 // span:86-108 // numtm:1 S0004135 // RMP1 SGDID:S0004135, Chr XII from 432169-432774, Uncharacterized ORF // sgd // 11 // --- /// YLR145W // cdna:known chromosome:SGD1:XII:432169:432774:1 gene:YLR145W // ensembl // 11 // --- --- No cerevisiae_gene 1.23975749014068 -2.93094735904813 1.55661025445307 -2.70431851721769 1.27405854642188 Max fold change below threshold 4 2.93094735904813 Max fold change at or above threshold 0.545642766085372 -0.871048031070358 -0.809564050611269 1.13496931559626 149.926166534424 93.4279740442481 0.623159893992197 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776503_at SPBC11B10.08.S1 --- 2.93094547248274 --- --- --- --- 3.3078465461731 4.47258377075195 6.06579542160034 2.073166847229 0.633789002895355 0.633789002895355 0.567627012729645 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11B10.08 /DEF=hypothetical protein --- --- --- --- --- --- SPBC11B10.08 // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.18963239683492 1.35211343945999 -2.93094547248274 1.83375961881242 -1.59555250007705 Max fold change below threshold 3 2.93094547248274 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775878_at YJR040W.S1 Chloride channel localized to late- or post-Golgi vesicles, involved in iron metabolism; highly homologous to voltage-gated chloride channels in vertebrates 2.92990217212772 157.758110046387 400.170974731445 GEF1 6878 // copper ion homeostasis // inferred from mutant phenotype /// 6879 // iron ion homeostasis // inferred from mutant phenotype /// 30003 // cation homeostasis // traceable author statement 5768 // endosome // inferred from direct assay /// 5794 // Golgi apparatus // inferred from direct assay /// 5798 // Golgi vesicle // traceable author statement 5247 // voltage-gated chloride channel activity // inferred from direct assay 384.601654052734 131.26774597168 184.248474121094 415.740295410156 0.00585938012227416 0.00195312988944352 0.00292969006113708 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR040W /GEN=GEF1 /DB_XREF=GI:6322500 /SEG=NC_001142:+507660,509999 /DEF=Chloride channel localized to late- or post-Golgi vesicles, involved in iron metabolism; highly homologous to voltage-gated chloride channels in vertebrates /NOTE=Gef1p; go_component: Golgi vesicle [goid GO:0005798] [evidence TAS] [pmid 9520490]; go_function: voltage-gated chloride channel activity [goid GO:0005247] [evidence IDA] [pmid 12074596]; go_process: cation homeostasis [goid GO:0030003] [evidence TAS] [pmid 9520490] --- --- --- --- --- S0003801 // span:75-97,154-176,204-226,262-284,297-319,339-358,371-393,440-457,464-486,501-523,530-552 // numtm:11 S0003801 // GEF1 SGDID:S0003801, Chr X from 507660-509999, Verified ORF // sgd // 11 // --- /// GENSCAN00000024164 // cdna:Genscan chromosome:SGD1:X:507660:509999:1 // ensembl // 11 // --- /// GENEFINDER00000024362 // cdna:GeneFinder chromosome:SGD1:X:508767:509999:1 // ensembl // 11 // --- /// YJR040W // cdna:known chromosome:SGD1:X:507660:509999:1 gene:YJR040W // ensembl // 11 // --- --- No cerevisiae_gene -1.88731442468752 -2.92990217212772 1.3400395012881 -2.08740753966821 1.08096335787769 Max fold change below threshold 4 2.92990217212772 Max fold change at or above threshold 0.742939703884959 -1.03874303705108 -0.666132636567961 0.961935969734081 278.964542388916 142.188001410375 0.50969919041591 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1775727_at YAL046C.S1 Hypothetical protein 2.92951669240071 334.942153930664 828.231384277344 --- --- --- --- 788.6708984375 269.215362548828 400.6689453125 867.791870117188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL046C /GEN=SPC72 /DB_XREF=GI:6319270 /SEG=NC_001133:-57032,57388 /DEF=Hypothetical ORF /NOTE=Yal046cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000044 // YAL046C SGDID:S0000044, Chr I from 57386-57030, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018185 // cdna:GeneFinder chromosome:SGD1:I:57030:57386:-1 // ensembl // 11 // --- /// GENSCAN00000020337 // cdna:Genscan chromosome:SGD1:I:57030:57386:-1 // ensembl // 11 // --- /// YAL046C // cdna:known chromosome:SGD1:I:57030:57386:-1 gene:YAL046C // ensembl // 11 // --- --- No cerevisiae_gene -2.15464502947892 -2.92951669240071 1.25927208305112 -1.96838539064309 1.10032191099791 Max fold change below threshold 4 2.92951669240071 Max fold change at or above threshold 0.710147415369458 -1.0712059283077 -0.620416085835806 0.981474598774052 581.586769104004 291.607242174865 0.501399374377304 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779397_at SPCC1620.03.S1 --- 2.92923568056903 --- --- --- --- 5.27029228210449 7.71354961395264 15.4379281997681 7.7009654045105 0.149657994508743 0.0676269978284836 0.00805663969367743 0.0107421996071935 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1620.03 /DEF=sequence orphan --- --- --- --- --- --- SPCC1620.03 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.8480214192905 1.46359048057815 -1.07652829053689 2.92923568056903 1.46120271747726 Max fold change below threshold 4 2.92923568056903 Max fold change at or above threshold AAAAPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1772080_at SPCC553.11c.S1 --- 2.92763022545994 --- --- --- --- 0.176730751991272 0.243991643190384 0.411190867424011 0.288982897996902 0.989257991313934 0.962401986122131 0.904784977436066 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC553.11c /DEF=transcription initiation factor activity --- --- --- --- --- --- SPCC553.11c // |||transcription factor TFIIA complex small subunit |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.92763022545994 1.38058396991619 -1.06549743022704 2.32665148985683 1.63515910355643 Max fold change below threshold 0 2.92763022545994 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774944_s_at YDL247W.S1 Alpha-glucoside permease, transports maltose, maltotriose, alpha-methylglucoside, and turanose; identical to Mph2p; encoded in a subtelomeric position in a region likely to have undergone duplication /// Alpha-glucoside permease, transports maltose, maltotriose, alpha-methylglucoside, and turanose; identical to Mph3p; encoded in a subtelomeric position in a region likely to have undergone duplication 2.92759297644122 14.7273073196411 7.82054257392883 MPH3 /// MPH2 8643 // carbohydrate transport // inferred from direct assay /// 8643 // carbohydrate transport // inferred from sequence similarity 5886 // plasma membrane // inferred from sequence similarity 15144 // carbohydrate transporter activity // inferred from sequence similarity /// 15581 // maltose porter activity // inferred from sequence similarity /// 15581 // maltose porter activity // inferred from direct assay 9.16947937011719 10.1099109649658 19.3447036743164 6.47160577774048 0.018554700538516 0.030273400247097 0.014160200022161 0.0461426004767418 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL247W /GEN=MPH2 /DB_XREF=GI:6319954 /SEG=NC_001136:+5985,7814 /DEF=Alpha-glucoside permease, transports maltose, maltotriose, alpha-methylglucoside, and turanose; identical to Mph3p; encoded in a subtelomeric position in a region likely to have undergone duplication /NOTE=Mph2p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 12210897]; go_function: carbohydrate transporter activity [goid GO:0015144] [evidence ISS] [pmid 12210897]; go_function: maltose porter activity [goid GO:0015581] [evidence IDA,ISS] [pmid 12210897]; go_process: carbohydrate transport [goid GO:0008643] [evidence IDA,ISS] [pmid 12210897] --- --- --- --- --- S0002406 // span:101-123,143-165,172-194,199-221,234-256,276-298,364-386,396-418,427-449,459-481,494-516,526-543 // numtm:12 /// S0003921 // span:101-123,143-165,172-194,199-221,234-256,276-298,364-386,396-418,427-449,459-481,494-516,526-543 // numtm:12 S0002406 // MPH2 SGDID:S0002406, Chr IV from 5985-7814, Verified ORF // sgd // 11 // --- /// S0003921 // MPH3 SGDID:S0003921, Chr X from 739731-737923, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023643 // cdna:GeneFinder chromosome:SGD1:IV:5985:7814:1 // ensembl // 11 // --- /// GENEFINDER00000024487 // cdna:GeneFinder chromosome:SGD1:X:737923:739731:-1 // ensembl // 11 // --- /// YDL247W // cdna:known chromosome:SGD1:IV:5985:7814:1 gene:YDL247W // ensembl // 11 // --- /// YJR160C // cdna:known chromosome:SGD1:X:737923:739731:-1 gene:YJR160C // ensembl // 11 // --- GENSCAN00000024262 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -2.92759297644122 1.10256106774322 1.53300170901485 2.10968397370081 -1.41687854375435 Max fold change below threshold 4 2.92759297644122 Max fold change at or above threshold -0.375987014758225 -0.207966481534774 1.44195128359823 -0.857997787305229 11.273924946785 5.59712302304119 0.496466230657083 PAPPPP Called_P_>2EXP 4 0 PPPP 0 4 0 Yes Yes 3 < x
1770485_at YJL148W.S1 RNA polymerase I subunit A34.5 2.92596263005537 161.415344238281 375.351089477539 RPA34 6360 // transcription from RNA polymerase I promoter // traceable author statement 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay /// 5736 // DNA-directed RNA polymerase I complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 358.816040039063 157.615432739258 165.215255737305 391.886138916016 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL148W /GEN=RPA34 /DB_XREF=GI:6322313 /SEG=NC_001142:+140355,141056 /DEF=RNA polymerase I subunit A34.5 /NOTE=Rpa34p; go_component: DNA-directed RNA polymerase I complex [goid GO:0005736] [evidence TAS] [pmid 8246845]; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 12206772]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12206772]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 8246845]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS] --- --- --- --- --- --- S0003684 // RPA34 SGDID:S0003684, Chr X from 140355-141056, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024428 // cdna:GeneFinder chromosome:SGD1:X:140355:141056:1 // ensembl // 11 // --- /// YJL148W // cdna:known chromosome:SGD1:X:140355:141056:1 gene:YJL148W // ensembl // 11 // --- --- No cerevisiae_gene 2.92596263005537 -2.2765285975051 -1.34806143601409 -2.17180936734793 1.09216449430007 Max fold change below threshold 4 2.92596263005537 Max fold change at or above threshold 0.727593873370636 -0.891202533068434 -0.830056762566461 0.993665422264259 268.38321685791 124.290248297742 0.463107379637472 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773086_at YDR165W.S1 Subunit of a tRNA methyltransferase complex composed of Trm8p and Trm82p that catalyzes 7-methylguanosine modification of tRNA 2.92547099368646 168.069366455078 443.578323364258 TRM82 30488 // tRNA methylation // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 5515 // protein binding // inferred from physical interaction /// 8176 // tRNA (guanine-N7-)-methyltransferase activity // inferred from mutant phenotype 411.602600097656 195.44255065918 140.696182250977 475.554046630859 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR165W /GEN=TRM82 /DB_XREF=GI:6320369 /SEG=NC_001136:+784865,786199 /DEF=Transfer RNA methyltransferase /NOTE=Trm82p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12403464]; go_function: tRNA (guanine-N7-)-methyltransferase activity [goid GO:0008176] [evidence IMP] [pmid 12403464]; go_process: tRNA methylation [goid GO:0030488] [evidence IMP] [pmid 12403464] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 1.89999997615814 --- S0002572 // TRM82 SGDID:S0002572, Chr IV from 784866-786200, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023506 // cdna:GeneFinder chromosome:SGD1:IV:784866:786200:1 // ensembl // 10 // --- /// GENSCAN00000025220 // cdna:Genscan chromosome:SGD1:IV:784866:786200:1 // ensembl // 10 // --- /// YDR165W // cdna:known chromosome:SGD1:IV:784866:786200:1 gene:YDR165W // ensembl // 10 // --- --- No cerevisiae_gene 1.93030128726128 -2.10600301065158 1.05822599977431 -2.92547099368646 1.15537182349681 Max fold change below threshold 4 2.92547099368646 Max fold change at or above threshold 0.65000363712086 -0.678285943197341 -1.01469885069705 1.04298115677353 305.823844909668 162.735635844327 0.532122130281877 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775873_at YNL009W.S1 Peroxisomal NADP-dependent isocitrate dehydrogenase, catalyzes oxidation of isocitrate to alpha-ketoglutarate with the formation of NADP(H+), required for growth on unsaturated fatty acids 2.92535072641221 1509.77575683594 539.202697753906 IDP3 6102 // isocitrate metabolism // traceable author statement /// 6635 // fatty acid beta-oxidation // inferred from mutant phenotype /// 6740 // NADPH regeneration // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5777 // peroxisome // traceable author statement /// 5777 // peroxisome // inferred from direct assay 4450 // isocitrate dehydrogenase (NADP+) activity // traceable author statement 518.42041015625 1502.98999023438 1516.5615234375 559.984985351563 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL009W /GEN=IDP3 /DB_XREF=GI:6324319 /SEG=NC_001146:+614819,616081 /DEF=Peroxisomal NADP-dependent isocitrate dehydrogenase, catalyzes oxidation of isocitrate to alpha-ketoglutarate with the formation of NADP(H+), required for growth on unsaturated fatty acids /NOTE=Idp3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: peroxisome [goid GO:0005777] [evidence TAS] [pmid 9175438]; go_function: isocitrate dehydrogenase (NADP+) activity [goid GO:0004450] [evidence TAS] [pmid 9175438]; go_process: NADPH regeneration [goid GO:0006740] [evidence TAS] [pmid 9452501]; go_process: fatty acid beta-oxidation [goid GO:0006635] [evidence IMP] [pmid 9452501]; go_process: isocitrate metabolism [goid GO:0006102] [evidence TAS] [pmid 9175438] --- --- --- --- --- --- S0004954 // IDP3 SGDID:S0004954, Chr XIV from 614820-616082, Verified ORF // sgd // 11 // --- /// GENSCAN00000020030 // cdna:Genscan chromosome:SGD1:XIV:614820:616082:1 // ensembl // 11 // --- /// YNL009W // cdna:known chromosome:SGD1:XIV:614820:616082:1 gene:YNL009W // ensembl // 11 // --- --- No cerevisiae_gene -1.17417167902831 2.89917210200381 2.40800984247333 2.92535072641221 1.08017542207257 Max fold change below threshold 4 2.92535072641221 Max fold change at or above threshold -0.902654883645839 0.853482838436187 0.877689844103176 -0.828517798893524 1024.48922729492 560.644855866343 0.547243290538719 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777446_at SPCC550.11.S1 --- 2.92528716113758 --- --- --- --- 5.85274267196655 2.00074124336243 3.52154278755188 2.49826240539551 0.149657994508743 0.633789002895355 0.398925989866257 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC550.11 /DEF=RanBP7importin-betaCse1p family --- --- --- --- --- --- SPCC550.11 // |||RanBP7/importin-beta/Cse1p family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.82254925442192 -2.92528716113758 1.05118904528246 -1.66198255283313 -2.34272535155889 Max fold change below threshold 2 2.92528716113758 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776735_at YER056C-A.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl34Bp and has similarity to rat L34 ribosomal protein 2.92407277484701 1081.14483642578 2887.72802734375 RPL34A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3009.86889648438 1029.34130859375 1132.94836425781 2765.58715820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER056C-A /GEN=RPL34A /DB_XREF=GI:9755331 /SEG=NC_001137:-269421,270183 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl34Bp and has similarity to rat L34 ribosomal protein /NOTE=Rpl34ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0002135 // RPL34A SGDID:S0002135, Chr V from 270183-270147,269749-269421, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YER056C-A // cdna:known chromosome:SGD1:V:269421:270183:-1 gene:YER056C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.55679246242605 -2.92407277484701 -2.06671117453412 -2.6566690869942 -1.08832906876815 Max fold change below threshold 4 2.92407277484701 Max fold change at or above threshold 0.977867546158589 -0.910792818447867 -0.81199159966015 0.744916871949428 1984.43643188477 1048.64147361048 0.528432887424119 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770306_at SPBC19C2.05.S1 --- 2.92347641103031 --- --- --- --- 4.49074697494507 1.5666481256485 5.5725531578064 1.87319707870483 0.303710997104645 0.753906011581421 0.219482004642487 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C2.05 /GEN=ran1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPBC19C2.05 // |ran1|pat1|serine/threonine protein kinase Ran1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.38856549936031 -2.86646816309576 -2.92347641103031 1.24089671248391 -2.39737026391802 Max fold change below threshold 2 2.92347641103031 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779195_at YMR094W.S1 Subunit of the CBF3 complex, which binds to the CDE III element of centromeres, bending the DNA upon binding, and may be involved in sister chromatid cohesion during mitosis 2.92189553479443 47.9485282897949 109.752716064453 CTF13 51382 // kinetochore assembly // inferred from direct assay 778 // condensed nuclear chromosome kinetochore // traceable author statement 8301 // DNA bending activity // inferred from direct assay /// 19237 // centromeric DNA binding // traceable author statement 108.092178344727 58.9032020568848 36.9938545227051 111.41325378418 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR094W /GEN=CTF13 /DB_XREF=GI:6323741 /SEG=NC_001145:+455824,457260 /DEF=Subunit of the CBF3 complex, which binds to the CDE III element of centromeres, bending the DNA upon binding, and may be involved in sister chromatid cohesion during mitosis /NOTE=Ctf13p; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence TAS] [pmid 11070082]; go_function: DNA bending activity [goid GO:0008301] [evidence IDA] [pmid 10097110]; go_function: centromeric DNA binding [goid GO:0019237] [evidence TAS] [pmid 11070082]; go_process: centromere/kinetochore complex maturation [goid GO:0000069] [evidence TAS] [pmid 12084919] --- --- --- --- --- --- S0004700 // CTF13 SGDID:S0004700, Chr XIII from 455824-457260, Verified ORF // sgd // 11 // --- /// GENSCAN00000018790 // cdna:Genscan chromosome:SGD1:XIII:455824:457260:1 // ensembl // 11 // --- /// YMR094W // cdna:known chromosome:SGD1:XIII:455824:457260:1 gene:YMR094W // ensembl // 11 // --- --- No cerevisiae_gene -1.30149315868703 -1.83508153326433 -1.07284369734358 -2.92189553479443 1.03072447507591 Max fold change below threshold 4 2.92189553479443 Max fold change at or above threshold 0.794357063603273 -0.541878618988465 -1.13705367988337 0.884575235268561 78.850622177124 36.8116021212933 0.466852398939891 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770892_at YBR138C.S1 Cytoplasmic protein of unknown function, potentially phosphorylated by Cdc28p 2.92189534448111 126.668148040771 387.831665039063 --- --- 5737 // cytoplasm // inferred from direct assay --- 359.831237792969 130.18635559082 123.149940490723 415.832092285156 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR138C /GEN=MEC1 /DB_XREF=GI:6319614 /SEG=NC_001134:-513718,515292 /DEF=Cytoplasmic protein of unknown function, potentially phosphorylated by Cdc28p /NOTE=Ybr138cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000342 // YBR138C SGDID:S0000342, Chr II from 515330-513756, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YBR138C // cdna:known chromosome:SGD1:II:513756:515330:-1 gene:YBR138C // ensembl // 11 // --- --- No cerevisiae_gene -1.77601362253864 -2.76397043422837 1.08393751139645 -2.92189534448111 1.15563088640016 Max fold change below threshold 4 2.92189534448111 Max fold change at or above threshold 0.672517793106532 -0.833021933179714 -0.879152299170245 1.03965643924343 257.249906539917 152.533259795555 0.592938057187929 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769805_at YMR169C.S1 Cytoplasmic aldehyde dehydrogenase, involved in beta-alanine synthesis; uses NAD+ as the preferred coenzyme; very similar to Ald2p; expression is induced by stress and repressed by glucose 2.92052980935799 399.1025390625 380.849243164063 ALD3 6598 // polyamine catabolism // inferred from genetic interaction /// 6598 // polyamine catabolism // inferred from mutant phenotype /// 6950 // response to stress // inferred from expression pattern /// 19483 // beta-alanine biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from sequence similarity 4028 // aldehyde dehydrogenase activity // inferred from sequence similarity 348.999145507813 356.150085449219 442.054992675781 412.699340820313 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR169C /GEN=ALD3 /DB_XREF=GI:6323821 /SEG=NC_001145:-599351,600871 /DEF=Expression induced in response to heat shock, oxidative and osmotic stress. NAD+ is preferred coenzyme. /NOTE=Ald3p; go_component: cytoplasm [goid GO:0005737] [evidence ISS] [pmid 10407263]; go_function: aldehyde dehydrogenase activity [goid GO:0004028] [evidence ISS] [pmid 10407263]; go_process: beta-alanine biosynthesis [goid GO:0019483] [evidence IMP] [pmid 12586697]; go_process: polyamine catabolism [goid GO:0006598] [evidence IGI,IMP] [pmid 12586697]; go_process: response to stress [goid GO:0006950] [evidence IEP] [pmid 10641035] --- --- --- --- --- --- S0004779 // ALD3 SGDID:S0004779, Chr XIII from 600871-599351, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018855 // cdna:Genscan chromosome:SGD1:XIII:599351:600871:-1 // ensembl // 11 // --- /// GENEFINDER00000021883 // cdna:GeneFinder chromosome:SGD1:XIII:599351:600871:-1 // ensembl // 11 // --- /// YMR169C // cdna:known chromosome:SGD1:XIII:599351:600871:-1 gene:YMR169C // ensembl // 11 // --- --- No cerevisiae_gene -2.92052980935799 1.02048984942643 1.40033240631955 1.26663631807054 1.1825224964944 Max fold change below threshold 4 2.92052980935799 Max fold change at or above threshold -0.912333056039564 -0.75311985367564 1.15952316813489 0.505929741580316 389.975891113281 44.9142397441442 0.115171836945934 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778448_at SPBC1706.01.S1 --- 2.92000728371348 --- --- --- --- 9.57901668548584 14.6137866973877 27.9707984924316 9.7651195526123 0.24609400331974 0.194580003619194 0.0461426004767418 0.0805663987994194 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1706.01 /GEN=tea4 /DEF=src (SH3) homology domain --- --- --- --- --- --- SPBC1706.01 // |tea4|wsh3|tip elongation aberrant protein 4|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.10233488017664 1.52560405490582 1.05643275054665 2.92000728371348 1.0194281807034 Max fold change below threshold 4 2.92000728371348 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1769729_at SPBC1289.12.S1 --- 2.91876200859311 --- --- --- --- 4.01596736907959 11.7216529846191 3.59577083587646 6.39072275161743 0.398925989866257 0.0561522990465164 0.111571997404099 0.194580003619194 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1289.12 /DEF=RNA-binding protein --- --- --- --- --- --- SPBC1289.12 // |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.98575734253263 2.91876200859311 1.66448724034664 -1.11685854087548 1.59132835610716 Max fold change below threshold 4 2.91876200859311 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1779122_at SPAC56E4.02c.S1 --- 2.91707515158308 --- --- --- --- 1.05507278442383 0.60105037689209 0.47204264998436 3.07772660255432 0.533936023712158 0.753906011581421 0.932372987270355 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC56E4.02c /DEF=conserved protein --- --- --- --- --- --- SPAC56E4.02c // |||glycosyl transferase family 28|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.44897550355954 -1.75538162022191 -1.0402697327144 -2.23512172990891 2.91707515158308 Max fold change below threshold 1 2.91707515158308 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769690_at YJR033C.S1 Subunit of the RAVE complex (Rav1p, Rav2p, Skp1p), which promotes assembly of the V-ATPase holoenzyme; required for transport between the early and late endosome/PVC and for localization of TGN membrane proteins; potential Cdc28p substrate 2.91649966284538 345.222015380859 443.33479309082 RAV1 7035 // vacuolar acidification // inferred from genetic interaction /// 7035 // vacuolar acidification // inferred from mutant phenotype /// 43254 // regulation of protein complex assembly // inferred from mutant phenotype /// 43254 // regulation of protein complex assembly // inferred from physical interaction /// 43254 // regulation of protein complex assembly // inferred from genetic interaction /// 45022 // early endosome to late endosome transport // inferred from genetic interaction /// 45022 // early endosome to late endosome transport // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 19898 // extrinsic to membrane // inferred from direct assay /// 43291 // RAVE complex // inferred from physical interaction --- 433.664978027344 300.309417724609 390.134613037109 453.004608154297 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR033C /GEN=RAV1 /DB_XREF=GI:6322493 /SEG=NC_001142:-492292,496365 /DEF=Regulator of (H+)-ATPase in vacuolar membrane /NOTE=Rav1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11283612]; go_component: hydrogen-transporting ATPase V1 domain [goid GO:0000221] [evidence IPI] [pmid 11283612]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: vacuolar acidification [goid GO:0007035] [evidence IGI,IMP,IPI] [pmid 11283612] --- --- --- --- scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 2.40000009536743 --- S0003794 // RAV1 SGDID:S0003794, Chr X from 496365-492292, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024159 // cdna:Genscan chromosome:SGD1:X:492292:496113:-1 // ensembl // 11 // --- /// GENEFINDER00000024510 // cdna:GeneFinder chromosome:SGD1:X:492292:495666:-1 // ensembl // 11 // --- /// YJR033C // cdna:known chromosome:SGD1:X:492292:496365:-1 gene:YJR033C // ensembl // 11 // --- --- No cerevisiae_gene -2.91649966284538 -1.44406053367605 1.39808381703062 -1.11157780810926 1.04459578501111 Max fold change below threshold 4 2.91649966284538 Max fold change at or above threshold 0.579728358251946 -1.3831232583248 -0.0609921868628511 0.864387086935702 394.27840423584 67.9397052617301 0.172314041377452 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774669_at YBR196C-B.S1 Identified by expression profiling and mass spectrometry 2.91621575880556 10.1852054595947 10.5435495376587 --- --- --- --- 8.85254764556885 6.53467464447021 13.8357362747192 12.2345514297485 0.00805663969367743 0.274170011281967 0.111571997404099 0.00122069998178631 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR196C-B /GEN=PGI1 /DB_XREF=GI:33438770 /SEG=NC_001134:-614483,614587 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Ybr196c-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028816 // YBR196C-B SGDID:S0028816, Chr II from 614625-614521, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YBR196C-B // cdna:known chromosome:SGD1:II:614521:614625:-1 gene:YBR196C-B // ensembl // 11 // --- --- No cerevisiae_gene 2.91621575880556 -1.3547036581324 -1.40530601455906 1.56291011680064 1.38203734332597 Max fold change below threshold 4 2.91621575880556 Max fold change at or above threshold -0.459325923339162 -1.16354482354089 1.05467230445619 0.568198442423855 10.3643774986267 3.29140981651397 0.317569464924458 PPAPAP Called_P_>2EXP 3 0 PAAP 2 2 0 Yes No 1 < x = 2
1771083_at YGL259W.S1 Protein with similarity to GPI-anchored aspartic proteases such as Yap1p and Yap3p 2.91595996993628 12.3698949813843 10.0772953033447 YPS5 --- --- 4190 // aspartic-type endopeptidase activity // inferred from sequence similarity 12.5299701690674 12.3285455703735 12.411244392395 7.62462043762207 0.194580003619194 0.00805663969367743 0.0561522990465164 0.0676269978284836 A P M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL259W /GEN=YPS5 /DB_XREF=GI:6321178 /SEG=NC_001139:+8470,8967 /DEF=Protein with similarity to GPI-anchored aspartic proteases such as Yap1p and Yap3p /NOTE=Yps5p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: aspartic-type endopeptidase activity [goid GO:0004190] [evidence ISS] [pmid 10191273]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003228 // YPS5 SGDID:S0003228, Chr VII from 8470-8967, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000021389 // cdna:GeneFinder chromosome:SGD1:VII:8470:8967:1 // ensembl // 11 // --- /// GENSCAN00000019155 // cdna:Genscan chromosome:SGD1:VII:8509:8967:1 // ensembl // 11 // --- /// YGL259W // cdna:known chromosome:SGD1:VII:8470:8967:1 gene:YGL259W // ensembl // 11 // --- --- No cerevisiae_gene -1.80481718167831 -1.01633806660681 -2.91595996993628 -1.00956598491809 -1.64335658038017 Max fold change below threshold 4 2.91595996993628 Max fold change at or above threshold 0.54415509654555 0.460254057633675 0.494701275745982 -1.49911042992521 11.2235951423645 2.40074022093355 0.213901177874078 APPAMA No 4 0 APMA 2 1 1 No No x = 1
1778739_at YOR315W.S1 Protein of unknown function, found in the cytoplasm and the nucleus; potential Cdc28p substrate 2.91528210262306 16.7864108085632 39.7813987731934 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 43.6772384643555 18.5906562805176 14.9821653366089 35.8855590820313 0.000732421991415322 0.00195312988944352 0.0676269978284836 0.000732421991415322 P P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR315W /GEN=SPS4 /DB_XREF=GI:6324891 /SEG=NC_001147:+904755,905795 /DEF=Protein of unknown function, found in the cytoplasm and the nucleus; potential Cdc28p substrate /NOTE=Yor315wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005842 // YOR315W SGDID:S0005842, Chr XV from 904755-905795, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000017769 // cdna:Genscan chromosome:SGD1:XV:905007:905795:1 // ensembl // 10 // --- /// YOR315W // cdna:known chromosome:SGD1:XV:904755:905795:1 gene:YOR315W // ensembl // 10 // --- GENEFINDER00000022545 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 1.30136878384688 -2.34941885887739 -1.64090588197864 -2.91528210262306 -1.21712576260866 Max fold change below threshold 4 2.91528210262306 Max fold change at or above threshold 1.12105028487707 -0.705930192538304 -0.968725756283877 0.553605663945113 28.2839047908783 13.731171456921 0.485476512470421 PPPPAP Called_P_>2EXP 1 0 PPAP 1 3 0 Yes Yes 2 < x = 3
1772286_at SPAC16C9.05.S1 --- 2.91461399132055 --- --- --- --- 4.07109785079956 10.8902997970581 5.96798467636108 5.42367506027222 0.274170011281967 0.111571997404099 0.366210997104645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16C9.05 /DEF=zinc finger protein --- --- --- --- --- --- SPAC16C9.05 // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.91461399132055 2.67502776798137 1.71111800340864 1.46593987545374 1.33223893383133 Max fold change below threshold 4 2.91461399132055 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777411_at SPBC947.06c.S1 --- 2.9144928605575 --- --- --- --- 2.30713033676147 6.72411489486694 3.29449701309204 3.67614555358887 0.5 0.194580003619194 0.219482004642487 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC947.06c /DEF=transporter --- --- --- --- --- --- SPBC947.06c // |||membrane transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.02795075151863 2.9144928605575 1.69473367555369 1.42796311096864 1.59338442870509 Max fold change below threshold 3 2.9144928605575 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774780_at YDL052C.S1 1-acyl-sn-gylcerol-3-phosphate acyltransferase, catalyzes the acylation of lysophosphatidic acid to form phosphatidic acid, a key intermediate in lipid metabolism; located in lipid particles and endoplasmic reticulum 2.91448481848575 432.741500854492 381.443832397461 SLC1 30148 // sphingolipid biosynthesis // inferred from mutant phenotype 5811 // lipid particle // inferred from direct assay 3841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // inferred from direct assay 361.289672851563 332.094146728516 533.388854980469 401.597991943359 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL052C /GEN=SLC1 /DB_XREF=GI:6320151 /SEG=NC_001136:-362672,363583 /DEF=fatty acyltransferase homologous to E. coli plsC gene; functionally complements plsC mutants /NOTE=Slc1p; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 10515935]; go_function: 1-acylglycerol-3-phosphate O-acyltransferase activity [goid GO:0003841] [evidence IDA] [pmid 9212466]; go_process: sphingolipid biosynthesis [goid GO:0030148] [evidence IMP] [pmid 8408076] --- --- --- --- --- S0002210 // span:7-29 // numtm:1 S0002210 // SLC1 SGDID:S0002210, Chr IV from 363583-362672, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023560 // cdna:GeneFinder chromosome:SGD1:IV:362672:363583:-1 // ensembl // 11 // --- /// GENSCAN00000025061 // cdna:Genscan chromosome:SGD1:IV:362672:363421:-1 // ensembl // 11 // --- /// YDL052C // cdna:known chromosome:SGD1:IV:362672:363583:-1 gene:YDL052C // ensembl // 11 // --- --- No cerevisiae_gene 2.91448481848575 -1.08791340169845 1.09527804479193 1.47634680717712 1.11156786955369 Max fold change below threshold 4 2.91448481848575 Max fold change at or above threshold -0.515284689018281 -0.843735001090306 1.42083490133765 -0.0618152112290664 407.092666625977 88.8887148222428 0.218350076308083 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776118_at YLR409C.S1 Possible U3 snoRNP protein involved in maturation of pre-18S rRNA, based on computational analysis of large-scale protein-protein interaction data 2.91434390493582 181.895393371582 330.527420043945 UTP21 6365 // 35S primary transcript processing // inferred from mutant phenotype /// 6365 // 35S primary transcript processing // RCA /// 6365 // 35S primary transcript processing // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction 30515 // snoRNA binding // RCA 313.765716552734 149.803451538086 213.987335205078 347.289123535156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR409C /GEN=UTP21 /DB_XREF=GI:6323441 /SEG=NC_001144:-934411,937230 /DEF=Possible U3 snoRNP protein involved in maturation of pre-18S rRNA, based on computational analysis of large-scale protein-protein interaction data /NOTE=Utp21p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: snoRNA binding [goid GO:0030515] [evidence TAS] [pmid 14566057]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0004401 // UTP21 SGDID:S0004401, Chr XII from 937230-934411, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018126 // cdna:Genscan chromosome:SGD1:XII:934411:937230:-1 // ensembl // 11 // --- /// GENEFINDER00000024780 // cdna:GeneFinder chromosome:SGD1:XII:934411:937230:-1 // ensembl // 11 // --- /// YLR409C // cdna:known chromosome:SGD1:XII:934411:937230:-1 gene:YLR409C // ensembl // 11 // --- --- No cerevisiae_gene 2.91434390493582 -2.0945159362564 -1.28415215744394 -1.46628171359783 1.10684216029315 Max fold change below threshold 4 2.91434390493582 Max fold change at or above threshold 0.63412403209274 -1.17238555654118 -0.465217957521818 1.00347948197026 256.211406707764 90.7619123896466 0.354246181135761 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775737_at YER156C.S1 Hypothetical protein 2.91414090206843 440.24267578125 891.156433105469 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 812.221618652344 278.717346191406 601.768005371094 970.091247558594 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER156C /GEN=BEM2 /DB_XREF=GI:6321004 /SEG=NC_001137:-483320,484336 /DEF=Hypothetical ORF /NOTE=Yer156cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000958 // YER156C SGDID:S0000958, Chr V from 484336-483320, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016935 // cdna:Genscan chromosome:SGD1:V:483320:484336:-1 // ensembl // 11 // --- /// GENEFINDER00000019604 // cdna:GeneFinder chromosome:SGD1:V:483320:484300:-1 // ensembl // 11 // --- /// YER156C // cdna:known chromosome:SGD1:V:483320:484336:-1 gene:YER156C // ensembl // 11 // --- --- No cerevisiae_gene 2.11184616363825 -2.91414090206843 1.0999738567278 -1.34972549454747 1.19436767660554 Max fold change below threshold 4 2.91414090206843 Max fold change at or above threshold 0.490257472390911 -1.29482832706518 -0.213912626903072 1.01848348157734 665.699554443359 298.867579711572 0.448952650962005 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779357_at SPCC737.04.S1 --- 2.91331303937461 --- --- --- --- 4.30236721038818 9.60364627838135 12.5341424942017 4.28411340713501 0.24609400331974 0.0375977009534836 0.0561522990465164 0.0952147990465164 A P M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC737.04 /GEN=B8647-5 /DEF=Pfam-B_8647 domain --- --- --- --- --- --- SPCC737.04 // |B8647-5||Pfam-B_8647 domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.44163687704747 2.2321772663182 1.68932133310606 2.91331303937461 -1.00426081233582 Max fold change below threshold 4 2.91331303937461 Max fold change at or above threshold APPAMA No 4 0 APMA 2 1 1 No No x = 1
1777453_at YIL139C.S1 Subunit of DNA polymerase zeta, which is involved in DNA repair; required for mutagenesis induced by DNA damage 2.91288087037272 68.8132591247559 221.863479614258 REV7 6280 // mutagenesis // traceable author statement /// 6281 // DNA repair // traceable author statement 16035 // zeta DNA polymerase complex // inferred from direct assay 3894 // zeta DNA polymerase activity // inferred from direct assay 197.100997924805 67.6653137207031 69.9612045288086 246.625961303711 0.000244141003349796 0.00805663969367743 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL139C /GEN=REV7 /DB_XREF=GI:6322052 /SEG=NC_001141:-87979,88716 /DEF=Protein required for mutagenesis by physical and chemical agents /NOTE=Rev7p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 9745046]; go_function: zeta DNA polymerase activity [goid GO:0003894] [evidence TAS] [pmid 9745046]; go_process: DNA repair [goid GO:0006281] [evidence TAS] [pmid 9745046]; go_process: mutagenesis [goid GO:0006280] [evidence TAS] [pmid 9745046] --- --- --- --- --- --- S0001401 // REV7 SGDID:S0001401, Chr IX from 88716-87979, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016370 // cdna:Genscan chromosome:SGD1:IX:87979:88716:-1 // ensembl // 11 // --- /// YIL139C // cdna:known chromosome:SGD1:IX:87979:88716:-1 gene:YIL139C // ensembl // 11 // --- --- No cerevisiae_gene 1.40104005423462 -2.91288087037272 1.31380945933298 -2.81728994308042 1.25126693370574 Max fold change below threshold 4 2.91288087037272 Max fold change at or above threshold 0.571003582487083 -0.856826522841761 -0.831500106602545 1.11732304695722 145.338369369507 90.6520206578017 0.62373082243223 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1769973_at YGR108W.S1 B-type cyclin involved in cell cycle progression; activates Cdc28p to promote the transition from G2 to M phase; accumulates during G2 and M, then targeted via a destruction box motif for ubiquitin-mediated degradation by the proteasome 2.91264351268973 58.8736515045166 147.946403503418 CLB1 79 // regulation of cyclin dependent protein kinase activity // traceable author statement /// 86 // G2/M transition of mitotic cell cycle // inferred from genetic interaction /// 86 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 86 // G2/M transition of mitotic cell cycle // inferred from sequence similarity /// 8315 // meiotic G2/MI transition // inferred from mutant phenotype /// 8315 // meiotic G2/MI transition // inferred from expression pattern /// 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from mutant phenotype /// 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 16538 // cyclin-dependent protein kinase regulator activity // traceable author statement 131.978103637695 45.3121376037598 72.4351654052734 163.914703369141 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR108W /GEN=CLB1 /DB_XREF=GI:6321545 /SEG=NC_001139:+703638,705053 /DEF=Involved in mitotic induction /NOTE=Clb1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence IGI,IMP,ISS] [pmid 1427070]; go_process: meiotic G2/MI transition [goid GO:0008315] [evidence IEP,IMP] [pmid 8455600]; go_process: mitotic spindle assembly (sensu Fungi) [goid GO:0030472] [evidence IGI,IMP] [pmid 1427070]; go_process: regulation of cyclin dependent protein kinase activity [goid GO:0000079] [evidence TAS] --- --- --- --- --- --- S0003340 // CLB1 SGDID:S0003340, Chr VII from 703640-705055, Verified ORF // sgd // 11 // --- /// GENSCAN00000019422 // cdna:Genscan chromosome:SGD1:VII:703640:705055:1 // ensembl // 11 // --- /// GENEFINDER00000021442 // cdna:GeneFinder chromosome:SGD1:VII:703640:705055:1 // ensembl // 11 // --- /// YGR108W // cdna:known chromosome:SGD1:VII:703640:705055:1 gene:YGR108W // ensembl // 11 // --- --- No cerevisiae_gene 1.38213953772304 -2.91264351268973 1.00482650826649 -1.82201701203111 1.24198407804917 Max fold change below threshold 4 2.91264351268973 Max fold change at or above threshold 0.527121037540277 -1.07198748210217 -0.57152961125912 1.11639605582101 103.410027503967 54.1964256767975 0.524092556446891 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777727_at SPAC1610.03c.S1 --- 2.91105082091951 --- --- --- --- 0.320074200630188 0.593786835670471 0.931752264499664 0.766528904438019 0.904784977436066 0.976073980331421 0.904784977436066 0.71875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1610.03c /GEN=crp79 /DEF=RNA-binding protein --- --- --- --- --- --- SPAC1610.03c // |crp79|meu5|RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.4763751235113 1.85515369405399 -1.24129631742137 2.91105082091951 2.39484751638468 Max fold change below threshold 0 2.91105082091951 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778359_at YLR180W.S1 S-adenosylmethionine synthetase, catalyzes transfer of the adenosyl group of ATP to the sulfur atom of methionine; one of two differentially regulated isozymes (Sam1p and Sam2p) 2.90966446192962 692.717071533203 951.011352539063 SAM1 6555 // methionine metabolism // traceable author statement 5737 // cytoplasm // inferred from direct assay 4478 // methionine adenosyltransferase activity // inferred from genetic interaction /// 4478 // methionine adenosyltransferase activity // inferred from sequence similarity 850.127807617188 713.134521484375 672.299621582031 1051.89489746094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR180W /GEN=SAM1 /DB_XREF=GI:6323209 /SEG=NC_001144:+515264,516412 /DEF=S-adenosylmethionine synthetase /NOTE=Sam1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: methionine adenosyltransferase activity [goid GO:0004478] [evidence IGI,ISS] [pmid 3316224]; go_process: methionine metabolism [goid GO:0006555] [evidence TAS] [pmid 1903502] --- --- --- --- --- --- S0004170 // SAM1 SGDID:S0004170, Chr XII from 515264-516412, Verified ORF // sgd // 11 // --- /// GENSCAN00000017960 // cdna:Genscan chromosome:SGD1:XII:515264:516412:1 // ensembl // 11 // --- /// GENEFINDER00000024859 // cdna:GeneFinder chromosome:SGD1:XII:515264:516412:1 // ensembl // 11 // --- /// YLR180W // cdna:known chromosome:SGD1:XII:515264:516412:1 gene:YLR180W // ensembl // 11 // --- --- No cerevisiae_gene 2.90966446192962 -1.19210020270462 1.17168690312104 -1.26450734215304 1.23733736037794 Max fold change below threshold 4 2.90966446192962 Max fold change at or above threshold 0.165113312321788 -0.635188799784468 -0.873742509692633 1.34381799715531 821.864212036133 171.176964374454 0.208278888248912 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771808_at SPBC2D10.08c.S1 --- 2.90922278034632 --- --- --- --- 6.23386240005493 18.1356945037842 7.56668281555176 9.2945613861084 0.274170011281967 0.111571997404099 0.334473013877869 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2D10.08c /DEF=mitochondrial ribosomal protein subunit yml6 --- --- --- --- --- --- SPBC2D10.08c // |||mitochondrial ribosomal protein subunit Yml6|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.98729599444121 2.90922278034632 -1.12877081656693 1.213803310045 1.49097955483048 Max fold change below threshold 4 2.90922278034632 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774453_at YLR276C.S1 ATP-dependent RNA helicase of the DEAD-box family involved in biogenesis of the 60S ribosomal subunit 2.90792033290931 586.422393798828 686.633148193359 DBP9 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 6365 // 35S primary transcript processing // traceable author statement /// 6365 // 35S primary transcript processing // inferred from mutant phenotype /// 6365 // 35S primary transcript processing // inferred from physical interaction 5730 // nucleolus // traceable author statement 4004 // ATP-dependent RNA helicase activity // traceable author statement 645.146850585938 431.083557128906 741.76123046875 728.119445800781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR276C /GEN=DBP9 /DB_XREF=GI:6323306 /SEG=NC_001144:-695048,696832 /DEF=Dead-Box Protein 9 /NOTE=Dbp9p; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 10690410]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence IMP,IPI] [pmid 11565753]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 11565753] --- --- --- --- --- --- S0004266 // DBP9 SGDID:S0004266, Chr XII from 696832-695048, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018035 // cdna:Genscan chromosome:SGD1:XII:695048:696832:-1 // ensembl // 11 // --- /// GENEFINDER00000024633 // cdna:GeneFinder chromosome:SGD1:XII:695048:696433:-1 // ensembl // 11 // --- /// YLR276C // cdna:known chromosome:SGD1:XII:695048:696832:-1 gene:YLR276C // ensembl // 11 // --- --- No cerevisiae_gene 2.90792033290931 -1.49657030503026 1.05665952008337 1.14975564058798 1.12861040108851 Max fold change below threshold 4 2.90792033290931 Max fold change at or above threshold 0.0600788446706881 -1.43203817585842 0.733524339799196 0.638434991388535 636.527770996094 143.462805203525 0.225383418824008 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778969_x_at YEL049W.S1 Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth /// Hypothetical protein /// Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 2.9074621133513 563.089874267578 759.771789550781 PAU4 /// PAU6 /// PAU1 /// PAU2 /// DAN3 --- 9277 // cell wall (sensu Fungi) // inferred from sequence similarity --- 704.183898925781 504.961120605469 621.218627929688 815.359680175781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL049W /GEN=PAU2 /DB_XREF=GI:6320786 /SEG=NC_001137:+63728,64090 /DEF=Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /NOTE=Pau2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000775 // PAU2 SGDID:S0000775, Chr V from 63728-64090, Verified ORF // sgd // 11 // --- /// GENSCAN00000016764 // cdna:Genscan chromosome:SGD1:V:63728:64090:1 // ensembl // 11 // --- /// GENEFINDER00000019744 // cdna:GeneFinder chromosome:SGD1:V:63728:64090:1 // ensembl // 11 // --- /// YEL049W // cdna:known chromosome:SGD1:V:63728:64090:1 gene:YEL049W // ensembl // 11 // --- --- No cerevisiae_gene -2.9074621133513 -1.39453092563134 1.22307273533981 -1.13355245201289 1.1578789026838 Max fold change below threshold 4 2.9074621133513 Max fold change at or above threshold 0.325920533316752 -1.19281949377389 -0.306550708087186 1.17344966854432 661.43083190918 131.17635327091 0.198322102542872 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777686_at YGL247W.S1 Essential nuclear envelope integral membrane protein required for nuclear transport; depletion alters nucleoporin distribution and nuclear envelope morphology, suggesting a role in the spatial organization of nuclear pores 2.90720676638265 373.220138549805 949.892181396484 BRR6 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 6611 // protein-nucleus export // inferred from mutant phenotype /// 6998 // nuclear membrane organization and biogenesis // inferred from mutant phenotype 5635 // nuclear membrane // inferred from direct assay --- 1024.98193359375 393.874389648438 352.565887451172 874.802429199219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL247W /GEN=BRR6 /DB_XREF=GI:6321190 /SEG=NC_001139:+36933,37526 /DEF=Bad Response to Refrigeration /NOTE=Brr6p; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 11483521]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 11483521]; go_process: nuclear membrane organization and biogenesis [goid GO:0006998] [evidence IMP] [pmid 11483521]; go_process: protein-nucleus export [goid GO:0006611] [evidence IMP] [pmid 11483521] --- --- --- --- --- S0003216 // span:53-75,160-182 // numtm:2 S0003216 // BRR6 SGDID:S0003216, Chr VII from 36933-37526, Verified ORF // sgd // 11 // --- /// YGL247W // cdna:known chromosome:SGD1:VII:36933:37526:1 gene:YGL247W // ensembl // 11 // --- --- No cerevisiae_gene -1.16390997641935 -2.60230662498423 -1.60840073192258 -2.90720676638265 -1.17167248213063 Max fold change below threshold 4 2.90720676638265 Max fold change at or above threshold 1.07218028080501 -0.789715910387637 -0.911584431280531 0.629120060863153 661.556159973145 338.959576226993 0.512367047176694 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774314_at SPAPB1A10.09.S1 --- 2.9056285609513 --- --- --- --- 15.0262079238892 6.95434331893921 14.6687431335449 8.69405078887939 0.0461426004767418 0.303710997104645 0.0375977009534836 0.194580003619194 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1A10.09 /DEF=microtubule-associated protein (predicted) --- --- --- --- --- --- SPAPB1A10.09 // |ase1||microtubule-associated protein Ase1 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.30975991410648 -2.16069400585492 -2.9056285609513 -1.02436914922362 -1.72833219965879 Max fold change below threshold 4 2.9056285609513 Max fold change at or above threshold PAAAPA No 4 0 PAPA 2 2 0 No No 1 < x = 2
1777613_at YBR276C.S1 Protein phosphatase with specificity for serine, threonine, and tyrosine residues; has a role in the DNA synthesis phase of the cell cycle 2.90529883698887 502.06022644043 1480.58520507813 PPS1 6470 // protein amino acid dephosphorylation // inferred from direct assay /// 7090 // regulation of S phase of mitotic cell cycle // inferred from genetic interaction /// 7090 // regulation of S phase of mitotic cell cycle // inferred from mutant phenotype --- 8330 // protein tyrosine/threonine phosphatase activity // inferred from direct assay /// 8330 // protein tyrosine/threonine phosphatase activity // inferred from sequence similarity 1426.96765136719 491.160369873047 512.960083007813 1534.20275878906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR276C /GEN=PPS1 /DB_XREF=GI:6319753 /SEG=NC_001134:-757578,760001 /DEF=Protein phosphatase with specificity for serine, threonine, and tyrosine residues; has a role in the DNA synthesis phase of the cell cycle /NOTE=Pps1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein tyrosine/threonine phosphatase activity [goid GO:0008330] [evidence IDA,ISS] [pmid 9083070]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence IDA] [pmid 9083070]; go_process: regulation of S phase of mitotic cell cycle [goid GO:0007090] [evidence IGI,IMP] [pmid 9083070] --- --- --- --- --- --- S0000480 // PPS1 SGDID:S0000480, Chr II from 760039-757616, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021360 // cdna:Genscan chromosome:SGD1:II:757616:760039:-1 // ensembl // 11 // --- /// YBR276C // cdna:known chromosome:SGD1:II:757616:760039:-1 gene:YBR276C // ensembl // 11 // --- --- No cerevisiae_gene -1.63623323336767 -2.90529883698887 -1.09272157028145 -2.78182981217557 1.07514894070593 Max fold change below threshold 4 2.90529883698887 Max fold change at or above threshold 0.768719310832758 -0.882563809212287 -0.844097023333267 0.957941521712796 991.322715759277 566.715222928345 0.571675816481502 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773238_at SPAC20G8.05c.S1 --- 2.90516591549904 --- --- --- --- 0.509398102760315 0.376355916261673 0.624781787395477 0.175342172384262 0.919434010982513 0.84521484375 0.828612983226776 0.981445014476776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20G8.05c /GEN=cdc15 /DEF=phosphoprotein --- --- --- --- --- --- SPAC20G8.05c // |cdc15||cell division control protein Cdc15|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.04601612794529 -1.35350098337803 -1.67999046215217 1.22650984369577 -2.90516591549904 Max fold change below threshold 0 2.90516591549904 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775512_at YCR051W.S1 Hypothetical protein 2.9038436853183 321.61255645752 633.477478027344 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 600.967102050781 206.95573425293 436.269378662109 665.987854003906 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR051W /GEN=ARE1 /DB_XREF=GI:6319899 /SEG=NC_001135:+214066,214734 /DEF=Hypothetical ORF /NOTE=Ycr051wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000647 // YCR051W SGDID:S0000647, Chr III from 214066-214734, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023318 // cdna:GeneFinder chromosome:SGD1:III:211924:214734:1 // ensembl // 11 // --- /// GENSCAN00000022494 // cdna:Genscan chromosome:SGD1:III:214066:214734:1 // ensembl // 11 // --- /// YCR051W // cdna:known chromosome:SGD1:III:214066:214734:1 gene:YCR051W // ensembl // 11 // --- --- No cerevisiae_gene -1.2136641675372 -2.9038436853183 1.10048287443589 -1.37751382848309 1.10819352961459 Max fold change below threshold 4 2.9038436853183 Max fold change at or above threshold 0.603038017535896 -1.32209421866296 -0.201672004655052 0.920728205782118 477.545017242432 204.667170591782 0.428581941391885 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777812_at YDL098C.S1 23 kD U4/U6.U5 snRNP associated protein; Putative RNA binding zinc finger protein 2.90372256669622 104.270313262939 308.071502685547 SNU23 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 31202 // RNA splicing factor activity, transesterification mechanism // inferred from physical interaction 284.860717773438 98.1019058227539 110.438720703125 331.282287597656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL098C /GEN=SNU23 /DB_XREF=GI:6320105 /SEG=NC_001136:-284581,285165 /DEF=23 kD U4/U6.U5 snRNP associated protein /NOTE=Snu23p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence IDA] [pmid 10377396]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10377396] --- --- --- --- --- --- S0002256 // SNU23 SGDID:S0002256, Chr IV from 285165-284581, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025027 // cdna:Genscan chromosome:SGD1:IV:284581:285165:-1 // ensembl // 11 // --- /// YDL098C // cdna:known chromosome:SGD1:IV:284581:285165:-1 gene:YDL098C // ensembl // 11 // --- --- No cerevisiae_gene 1.08843958143264 -2.90372256669622 1.26312297548101 -2.57935546482093 1.16296234239338 Max fold change below threshold 4 2.90372256669622 Max fold change at or above threshold 0.659665320582495 -0.905954317734573 -0.802533443242763 1.04882244039484 206.170907974243 119.287474032605 0.578585384352614 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775522_at YDR260C.S1 Subunit of the anaphase-promoting complex, which is an E3 ubiquitin ligase that regulates the metaphase-anaphase transition and exit from mitosis; required for activation of the daughter-specific gene expression and spore wall maturation 2.90255976774601 89.9793548583984 205.266624450684 SWM1 16567 // protein ubiquitination // inferred from physical interaction /// 30071 // regulation of mitotic metaphase/anaphase transition // inferred from mutant phenotype /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype /// 31145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5680 // anaphase-promoting complex // inferred from direct assay --- 200.885162353516 69.2096557617188 110.749053955078 209.648086547852 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR260C /GEN=SWM1 /DB_XREF=GI:6320466 /SEG=NC_001136:-976709,977221 /DEF=Spore Wall Maturation 1 /NOTE=Swm1p; go_component: anaphase-promoting complex [goid GO:0005680] [evidence IDA] [pmid 12574115]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10022899]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: regulation of mitotic metaphase/anaphase transition [goid GO:0030071] [evidence IMP] [pmid 12609981]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence IMP] [pmid 10022899] --- --- --- --- --- --- S0002668 // SWM1 SGDID:S0002668, Chr IV from 977223-976711, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025300 // cdna:Genscan chromosome:SGD1:IV:976711:977223:-1 // ensembl // 11 // --- /// YDR260C // cdna:known chromosome:SGD1:IV:976711:977223:-1 gene:YDR260C // ensembl // 11 // --- --- No cerevisiae_gene -1.03815794526704 -2.90255976774601 1.25878068029298 -1.81387700553179 1.04362156015741 Max fold change below threshold 4 2.90255976774601 Max fold change at or above threshold 0.774377926865293 -1.14005028074434 -0.536109595898327 0.901781949777377 147.622989654541 68.7805925907285 0.465920604586622 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778211_at SPBC31F10.12.S1 --- 2.90231925488008 --- --- --- --- 17.2152214050293 13.0235366821289 12.1199216842651 5.93153953552246 0.00585938012227416 0.567627012729645 0.129638999700546 0.0239257998764515 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31F10.12 /DEF=PUA domain --- --- --- --- --- --- SPBC31F10.12 // |||PUA domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.95022353902323 -1.32185456417935 -1.43084197370065 -1.42040698393119 -2.90231925488008 Max fold change below threshold 4 2.90231925488008 Max fold change at or above threshold PAAAAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1772596_at SPBC30D10.03c.S1 --- 2.90179670963738 --- --- --- --- 5.73608112335205 16.6449413299561 11.7462329864502 9.87551498413086 0.24609400331974 0.194580003619194 0.0676269978284836 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30D10.03c /DEF=5-nucleotidase activity (IMP specific) (predicted) --- --- --- --- --- --- SPBC30D10.03c // |||IMP 5'-nucleotidase activity |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.03618256173436 2.90179670963738 1.7855310565734 2.04778013662156 1.72164841670855 Max fold change below threshold 4 2.90179670963738 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771459_at YBR131W.S1 Protein involved in vacuolar assembly, essential for autophagy and the cytoplasm-to-vacuole pathway 2.90090414464977 241.792213439941 735.427764892578 CCZ1 46 // autophagic vacuole fusion // inferred from direct assay /// 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6914 // autophagy // inferred from direct assay /// 7034 // vacuolar transport // inferred from genetic interaction /// 7034 // vacuolar transport // inferred from mutant phenotype 5770 // late endosome // traceable author statement /// 5773 // vacuole // inferred from direct assay /// 16020 // membrane // traceable author statement 5085 // guanyl-nucleotide exchange factor activity // inferred from physical interaction 662.1396484375 228.252853393555 255.331573486328 808.715881347656 0.00195312988944352 0.00122069998178631 0.00292969006113708 0.00585938012227416 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR131W /GEN=CCZ1 /DB_XREF=GI:6319607 /SEG=NC_001134:+497119,499233 /DEF=Calcium Caffeine Zinc sensitivity /NOTE=Ccz1p; go_component: late endosome [goid GO:0005770] [evidence TAS] [pmid 11069774]; go_component: membrane [goid GO:0016020] [evidence TAS] [pmid 11069774]; go_component: vacuole [goid GO:0005773] [evidence IDA] [pmid 11590240]; go_function: guanyl-nucleotide exchange factor activity [goid GO:0005085] [evidence IPI] [pmid 11590240]; go_process: autophagic vacuole fusion [goid GO:0000046] [evidence IDA] [pmid 12208507]; go_process: autophagy [goid GO:0006914] [evidence IDA] [pmid 12208507]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 12364329]; go_process: vacuolar transport [goid GO:0007034] [evidence IGI,IMP] [pmid 11590240] --- --- --- --- --- --- S0000335 // CCZ1 SGDID:S0000335, Chr II from 497157-499271, Verified ORF // sgd // 11 // --- /// GENSCAN00000021246 // cdna:Genscan chromosome:SGD1:II:497157:499271:1 // ensembl // 11 // --- /// GENEFINDER00000022235 // cdna:GeneFinder chromosome:SGD1:II:497652:499271:1 // ensembl // 11 // --- /// YBR131W // cdna:known chromosome:SGD1:II:497157:499271:1 gene:YBR131W // ensembl // 11 // --- --- No cerevisiae_gene 1.43924263787349 -2.90090414464977 -1.16360331993628 -2.59325409465255 1.22136755177861 Max fold change below threshold 4 2.90090414464977 Max fold change at or above threshold 0.595452918870538 -0.893394345933139 -0.80047591927204 1.09841734633464 488.60998916626 291.424651340014 0.596436130659725 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1775186_at YJL191W.S1 Ribosomal protein 59 of the small subunit, required for ribosome assembly and 20S pre-rRNA processing; mutations confer cryptopleurine resistance; nearly identical to Rps14Ap and similar to E. coli S11 and rat S14 ribosomal proteins /// Ribosomal protein 59 of the small subunit, required for ribosome assembly and 20S pre-rRNA processing; mutations confer cryptopleurine resistance; nearly identical to Rps14Bp and similar to E. coli S11 and rat S14 ribosomal proteins 2.89993396929027 566.488006591797 1247.26885986328 RPS14B /// RPS14A 28 // ribosomal small subunit assembly and maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement /// 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3723 // RNA binding // inferred from direct assay /// 3735 // structural constituent of ribosome // traceable author statement 1265.75073242188 436.475708007813 696.500305175781 1228.78698730469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL191W /GEN=RPS14B /DB_XREF=GI:6322270 /SEG=NC_001142:+73786,74610 /DEF=Ribosomal protein 59 (rp59) of the small (40S) ribosomal subunit, required for ribosome assembly; mutations confer resistance to cryptopleurine; nearly identical to Rps14Ap and similar to E. coli S11 and rat S14 ribosomal proteins /NOTE=Rps14bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 9858605]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: ribosomal small subunit assembly and maintenance [goid GO:0000028] [evidence IMP] [pmid 2277060] --- --- --- --- --- --- S0003727 // RPS14B SGDID:S0003727, Chr X from 73786-73795,74204-74610, intron sequence removed, Verified ORF // sgd // 11 // --- /// YJL191W // cdna:known chromosome:SGD1:X:73786:74610:1 gene:YJL191W // ensembl // 11 // --- GENSCAN00000023994 // ensembl // 4 // Cross Hyb Matching Probes /// GENEFINDER00000024363 // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene 1.95337037312073 -2.89993396929027 -1.69412013432019 -1.81730104497575 -1.0300814913399 Max fold change below threshold 4 2.89993396929027 Max fold change at or above threshold 0.880859757407981 -1.15461358079554 -0.51637762863181 0.790131452019371 906.878433227539 407.411391173499 0.44924587050057 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779673_at SPAC869.08.S1 --- 2.89922981164584 --- --- --- --- 2.41777801513672 7.00969409942627 5.49998617172241 5.38490962982178 0.633789002895355 0.366210997104645 0.398925989866257 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC869.08 /GEN=pcm2 /DEF=protein-L-isoaspartate O-methyltransferase (predicted) --- --- --- --- --- --- SPAC869.08 // |pcm2||protein-L-isoaspartate O-methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.47057192973875 2.89922981164584 2.80059454312518 2.27481023373083 2.22721424221292 Max fold change below threshold 3 2.89922981164584 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773564_at YAL036C.S1 Member of the DRG family of GTP-binding proteins; interacts with translating ribosomes 2.89905065140508 685.320709228516 1813.68566894531 RBG1 --- 5737 // cytoplasm // inferred from direct assay 5525 // GTP binding // inferred from sequence similarity 1756.1162109375 605.755615234375 764.885803222656 1871.25512695313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL036C /GEN=CDC19 /DB_XREF=GI:6319281 /SEG=NC_001133:-75046,76155 /DEF=GTPase, interacts with ribosomes, has similarity to Xenopus GTP-binding protein DRG /NOTE=Yal036cp --- --- --- --- --- --- S0000034 // RBG1 SGDID:S0000034, Chr I from 76153-75044, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018191 // cdna:GeneFinder chromosome:SGD1:I:75044:76153:-1 // ensembl // 11 // --- /// GENSCAN00000020346 // cdna:Genscan chromosome:SGD1:I:75044:76153:-1 // ensembl // 11 // --- /// YAL036C // cdna:known chromosome:SGD1:I:75044:76153:-1 gene:YAL036C // ensembl // 11 // --- --- No cerevisiae_gene 1.05845849578176 -2.89905065140508 -1.02040475573555 -2.29591947391171 1.06556451976157 Max fold change below threshold 4 2.89905065140508 Max fold change at or above threshold 0.771830923369329 -0.98075703330403 -0.738320312111432 0.947246422046134 1249.50318908691 656.378238434697 0.525311375086887 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779034_at SPAC17C9.10.S1 --- 2.89897355408222 --- --- --- --- 0.703882873058319 2.04053783416748 1.97821867465973 0.49666041135788 0.904784977436066 0.780517995357513 0.805419981479645 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17C9.10 /GEN=stm1 /DEF=G-protein coupled receptor activity --- --- --- --- --- --- L49134 // Schizosaccharomyces pombe seven transmembrane protein (stm1) mRNA, complete cds. // gb // 11 // --- /// SPAC17C9.10 // |stm1||G-protein coupled receptor activity|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.75350133941889 2.89897355408222 1.85540945000908 2.81043729060279 -1.41723168781238 Max fold change below threshold 0 2.89897355408222 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776094_at YGR013W.S1 associated with U1 snRNP (no counterpart in mammalian U1 snRNP; contains few SR-, RE- and RD-dipeptides; U1 snRNP protein 2.89887984571991 189.763610839844 377.904861450195 SNU71 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 243 // commitment complex // inferred from physical interaction /// 243 // commitment complex // traceable author statement /// 5685 // snRNP U1 // inferred from physical interaction /// 5685 // snRNP U1 // traceable author statement /// 5685 // snRNP U1 // inferred from direct assay 3723 // RNA binding // inferred from direct assay 373.776000976563 128.938079833984 250.589141845703 382.033721923828 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR013W /GEN=SNU71 /DB_XREF=GI:6321450 /SEG=NC_001139:+514556,516418 /DEF=associated with U1 snRNP (no counterpart in mammalian U1 snRNP; contains few SR-, RE- and RD-dipeptides /NOTE=Snu71p; go_component: commitment complex [goid GO:0000243] [evidence IPI,TAS] [pmid 10072386]; go_component: snRNP U1 [goid GO:0005685] [evidence IPI,TAS] [pmid 10072386]; go_component: snRNP U1 [goid GO:0005685] [evidence IDA] [pmid 11804584]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 9630245]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 9630245] --- --- --- --- --- --- S0003245 // SNU71 SGDID:S0003245, Chr VII from 514558-516420, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021419 // cdna:GeneFinder chromosome:SGD1:VII:513163:520867:1 // ensembl // 9 // --- /// GENSCAN00000019351 // cdna:Genscan chromosome:SGD1:VII:514558:516420:1 // ensembl // 11 // --- /// YGR013W // cdna:known chromosome:SGD1:VII:514558:516420:1 gene:YGR013W // ensembl // 11 // --- --- No cerevisiae_gene -1.45168752458663 -2.89887984571991 -1.29941733646803 -1.4915889739816 1.02209269970702 Max fold change below threshold 4 2.89887984571991 Max fold change at or above threshold 0.752738912221886 -1.29635397334375 -0.278234212620266 0.821849273742129 283.83423614502 119.486004205706 0.420971077444855 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772581_at YGR001C.S1 Protein with similarity to methyltransferase family members; required for replication of Brome mosaic virus in S. cerevisiae, which is a model system for studying replication of positive-strand RNA viruses in their natural hosts 2.89869080869861 319.571044921875 952.433654785156 --- --- 5737 // cytoplasm // inferred from direct assay 8168 // methyltransferase activity // inferred from sequence similarity 901.596252441406 328.106414794922 311.035675048828 1003.27105712891 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR001C /GEN=ERG26 /DB_XREF=GI:9755334 /SEG=NC_001139:-497135,498036 /DEF=Hypothetical ORF /NOTE=Ygr001cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003233 // YGR001C SGDID:S0003233, Chr VII from 498038-498004,497941-497463,497369-497137, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YGR001C // cdna:known chromosome:SGD1:VII:497137:498038:-1 gene:YGR001C // ensembl // 11 // --- GENEFINDER00000021613 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene -1.26902390739441 -2.74787755370445 1.07831155855368 -2.89869080869861 1.11277199124572 Max fold change below threshold 4 2.89869080869861 Max fold change at or above threshold 0.722115770533109 -0.837129573467044 -0.883542726273673 0.998556529207608 636.002349853516 367.799615277497 0.578299145218895 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775163_at SPCC1020.06c.S1 --- 2.89856708473275 --- --- --- --- 6.08642530441284 2.09980487823486 6.0168080329895 6.35097599029541 0.274170011281967 0.366210997104645 0.24609400331974 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1020.06c /GEN=tal1 /DEF=transaldolase (predicted) --- --- --- --- --- --- D89215 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1195. // gb // 11 // --- /// AB010049 // Schizosaccharomyces pombe mRNA for transaldolase, partial cds. // gb // 11 // --- /// SPCC1020.06c // |tal1||transaldolase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.32542351822139 -2.89856708473275 1.40752116923645 -1.01157046577548 1.04346569170754 Max fold change below threshold 3 2.89856708473275 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773514_at YLR385C.S1 Protein of unknown function, component of the Swr1p complex that incorporates Htz1p into chromatin 2.89820099571974 11.7136783599854 11.3707995414734 SWC7 6338 // chromatin remodeling // inferred from physical interaction 812 // SWR1 complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay --- 14.0900678634644 18.5656967163086 4.86166000366211 8.65153121948242 0.014160200022161 0.030273400247097 0.129638999700546 0.030273400247097 P P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR385C /GEN=SWC7 /DB_XREF=GI:6323417 /SEG=NC_001144:-892992,893390 /DEF=Protein of unknown function, component of the Swr1p complex that incorporates Htz1p into chromatin /NOTE=Swc7p; go_component: SWR1 complex [goid GO:0000812] [evidence IPI] [pmid 14690608]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin remodeling [goid GO:0006338] [evidence IPI] [pmid 14690608] --- --- --- --- --- --- S0004377 // SWC7 SGDID:S0004377, Chr XII from 893390-892992, reverse complement, Verified ORF // sgd // 11 // --- /// YLR385C // cdna:known chromosome:SGD1:XII:892992:893390:-1 gene:YLR385C // ensembl // 11 // --- --- No cerevisiae_gene -1.19009366007294 1.31764423679247 -2.11830576910973 -2.89820099571974 -1.62862128171426 Max fold change below threshold 4 2.89820099571974 Max fold change at or above threshold 0.423061042167663 1.16622876327159 -1.10929453602743 -0.479995269411821 11.5422389507294 6.02236712622018 0.521767670200557 PPPPAP Called_P_>2EXP 4 0 PPAP 1 3 0 Yes Yes 2 < x = 3
1775677_at YOR162C.S1 Zn2-Cys6 zinc-finger transcription factor that activates genes involved in multidrug resistance; paralog of Yrm1p, acting on an overlapping set of target genes 2.89709442418998 279.554443359375 761.785888671875 YRR1 6855 // multidrug transport // inferred from mutant phenotype /// 6855 // multidrug transport // inferred from physical interaction /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 5634 // nucleus // inferred from physical interaction 3704 // specific RNA polymerase II transcription factor activity // inferred from mutant phenotype /// 3704 // specific RNA polymerase II transcription factor activity // inferred from physical interaction 723.7783203125 249.829040527344 309.279846191406 799.79345703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR162C /GEN=YRR1 /DB_XREF=GI:6324736 /SEG=NC_001147:-639560,641992 /DEF=Zn2-Cys6 zinc-finger transcription factor that activates genes involved in multidrug resistance; paralog of Yrm1p, acting on an overlapping set of target genes /NOTE=Yrr1p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 11909958]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IMP,IPI] [pmid 11909958]; go_process: multidrug transport [goid GO:0006855] [evidence IMP,IPI] [pmid 11909958]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IMP] [pmid 9767597] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 2.5 /// scop // a.4.5.Replication terminator protein (RTP) // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Replication terminator protein (RTP) // 3.20000004768372 --- S0005688 // YRR1 SGDID:S0005688, Chr XV from 641992-639560, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017586 // cdna:Genscan chromosome:SGD1:XV:639560:641992:-1 // ensembl // 11 // --- /// GENEFINDER00000022905 // cdna:GeneFinder chromosome:SGD1:XV:639560:641992:-1 // ensembl // 11 // --- /// YOR162C // cdna:known chromosome:SGD1:XV:639560:641992:-1 gene:YOR162C // ensembl // 11 // --- --- No cerevisiae_gene -2.68453825761949 -2.89709442418998 1.24158359182836 -2.34020525173364 1.10502544022862 Max fold change below threshold 4 2.89709442418998 Max fold change at or above threshold 0.722316316718901 -0.963196011779754 -0.751770295653804 0.992649990714657 520.670166015625 281.190040423685 0.540054066426473 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772396_at YBR097W.S1 Myristoylated serine/threonine protein kinase involved in vacuolar protein sorting; functions as a membrane-associated complex with Vps34p; active form recruits Vps34p to the Golgi membrane; also detected in mitochondria 2.89682464105066 297.509979248047 672.501220703125 VPS15 6468 // protein amino acid phosphorylation // inferred from direct assay /// 6623 // protein-vacuolar targeting // traceable author statement /// 7034 // vacuolar transport // traceable author statement /// 45053 // protein-Golgi retention // inferred from mutant phenotype 139 // Golgi membrane // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 4674 // protein serine/threonine kinase activity // inferred from direct assay 669.336669921875 270.862396240234 324.157562255859 675.665771484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR097W /GEN=VPS15 /DB_XREF=GI:6319573 /SEG=NC_001134:+436908,441272 /DEF=myristoylated protein kinase involved in vacuolar protein sorting /NOTE=Vps15p; go_component: Golgi membrane [goid GO:0000139] [evidence TAS] [pmid 8689553]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence IDA] [pmid 7989323]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 7989323]; go_process: protein-Golgi retention [goid GO:0045053] [evidence IMP] [pmid 8649377]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence TAS] [pmid 8689553]; go_process: vacuolar transport [goid GO:0007034] [evidence TAS] [pmid 8689553] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-33 /// hanks // 1.8.7 // AGC group; AGC VIII Flowering plant PVPK1 homologs; PsPK5 // 5.0E-39 --- --- S0000301 // VPS15 SGDID:S0000301, Chr II from 436945-441309, Verified ORF // sgd // 11 // --- /// GENSCAN00000021217 // cdna:Genscan chromosome:SGD1:II:436945:441309:1 // ensembl // 11 // --- /// GENEFINDER00000022125 // cdna:GeneFinder chromosome:SGD1:II:437896:441309:1 // ensembl // 11 // --- /// YBR097W // cdna:known chromosome:SGD1:II:436945:441309:1 gene:YBR097W // ensembl // 11 // --- --- No cerevisiae_gene -2.89682464105066 -2.47113175993697 1.24743261515252 -2.06484977633674 1.00945578189111 Max fold change below threshold 4 2.89682464105066 Max fold change at or above threshold 0.847081766942916 -0.984081541173794 -0.739166978418929 0.876166752649807 485.005599975586 217.607174584258 0.448669406281519 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-BioB-3_at AFFX-BioB-3 FBJ murine osteosarcoma viral oncogene homolog 2.89595279878355 Fos 74 // regulation of cell cycle // inferred from electronic annotation /// 6306 // DNA methylation // inferred from electronic annotation /// 6355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 6954 // inflammatory response // inferred from electronic annotation /// 7399 // neurogenesis // inferred from electronic annotation /// 50875 // cellular physiological process // inferred from electronic annotation 5634 // nucleus // inferred from electronic annotation /// 5634 // nucleus // traceable author statement /// 5667 // transcription factor complex // inferred from electronic annotation 3677 // DNA binding // inferred from direct assay /// 3677 // DNA binding // inferred from electronic annotation /// 3690 // double-stranded DNA binding // inferred from direct assay /// 3700 // transcription factor activity // inferred from electronic annotation /// 3700 // transcription factor activity // traceable author statement /// 3704 // specific RNA polymerase II transcription factor activity // inferred from electronic annotation /// 46982 // protein heterodimerization activity // inferred from direct assay 346.984954833984 436.593170166016 127.144561767578 119.817199707031 4.42872878920753E-5 4.42872878920753E-5 8.14278828329407E-5 7.00668097124435E-5 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2755-3052 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. Rn.103750 314322 --- --- --- --- AI059251 // UI-R-C1-ld-f-02-0-UI.s1 Rattus norvegicus cDNA, 3' end // gb // --- // --- 1037718 // gb // 8 // Cross Hyb Matching Probes /// 26245917 // gb // 8 // Cross Hyb Matching Probes AFFX_control No -1.72091984882245 1.25824812887033 -2.34433534914505 -2.72905856145289 -2.89595279878355 Max fold change below threshold 4 2.89595279878355 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773162_at YJL079C.S1 Protein of unknown function, has similarity to Pry2p and Pry3p and to the plant PR-1 class of pathogen related proteins 2.8946724777548 627.495803833008 1161.86865234375 PRY1 --- 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5576 // extracellular region // inferred from direct assay /// 5635 // nuclear membrane // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay --- 1111.48718261719 457.915008544922 797.076599121094 1212.25012207031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL079C /GEN=PRY1 /DB_XREF=GI:6322382 /SEG=NC_001142:-289791,290690 /DEF=Protein of unknown function, has similarity to Pry2p and Pry3p and to the plant PR-1 class of pathogen related proteins /NOTE=Pry1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11914276]; go_component: extracellular [goid GO:0005576] [evidence IDA] [pmid 11935221]; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 11914276]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003615 // PRY1 SGDID:S0003615, Chr X from 290690-289791, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024078 // cdna:Genscan chromosome:SGD1:X:289791:290690:-1 // ensembl // 11 // --- /// GENEFINDER00000024470 // cdna:GeneFinder chromosome:SGD1:X:289791:290690:-1 // ensembl // 11 // --- /// YJL079C // cdna:known chromosome:SGD1:X:289791:290690:-1 gene:YJL079C // ensembl // 11 // --- --- No cerevisiae_gene -2.8946724777548 -2.42727834178021 -1.09303435566959 -1.39445466576585 1.09065596169617 Max fold change below threshold 4 2.8946724777548 Max fold change at or above threshold 0.636427575736447 -1.28212338735208 -0.28651980743192 0.932215619047558 894.682228088379 340.659271839268 0.38076007452069 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770472_at SPBC13G1.09.S1 --- 2.89437958929493 --- --- --- --- 12.705738067627 9.88251972198486 9.07735824584961 6.72996234893799 0.129638999700546 0.111571997404099 0.030273400247097 0.0561522990465164 A A P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13G1.09 /DEF=bystin-family protein --- --- --- --- --- --- SPBC13G1.09 // |||bystin-family protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.89437958929493 -1.28567798750368 -1.12744968530174 -1.39971759662965 -1.88793598074616 Max fold change below threshold 4 2.89437958929493 Max fold change at or above threshold AAAAPM No 4 0 AAPM 2 1 1 No No x = 1
1778995_at YDR480W.S1 Regulatory protein of unknown function, pheromone-inducible, involved in the regulation of mating-specific genes and the invasive growth pathway, required for MAP-kinase imposed repression, inhibits pheromone-responsive transcription 2.89420599657158 314.14582824707 822.051300048828 DIG2 1403 // invasive growth (sensu Saccharomyces) // inferred from genetic interaction 5634 // nucleus // traceable author statement 8134 // transcription factor binding // inferred from direct assay 796.830078125 275.319061279297 352.972595214844 847.272521972656 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR480W /GEN=DIG2 /DB_XREF=GI:6320688 /SEG=NC_001136:+1417387,1418358 /DEF=Regulatory protein of unknown function, pheromone-inducible, involved in the regulation of mating-specific genes and the invasive growth pathway, required for MAP-kinase imposed repression, inhibits pheromone-responsive transcription /NOTE=Dig2p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 9860980]; go_function: transcription factor binding [goid GO:0008134] [evidence IDA] [pmid 10825185]; go_process: invasive growth (sensu Saccharomyces) [goid GO:0001403] [evidence IGI] [pmid 8918885] --- --- --- --- scop // a.4.5.SCF ubiquitin ligase complex WHB domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; SCF ubiquitin ligase complex WHB domain // 4.40000009536743 --- S0002888 // DIG2 SGDID:S0002888, Chr IV from 1417389-1418360, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023958 // cdna:GeneFinder chromosome:SGD1:IV:1417827:1418360:1 // ensembl // 10 // --- /// GENSCAN00000025475 // cdna:Genscan chromosome:SGD1:IV:1417827:1418360:1 // ensembl // 10 // --- /// YDR480W // cdna:known chromosome:SGD1:IV:1417389:1418360:1 gene:YDR480W // ensembl // 11 // --- --- No cerevisiae_gene 1.0292141928344 -2.89420599657158 -1.05007320201423 -2.25748426061234 1.06330389029284 Max fold change below threshold 4 2.89420599657158 Max fold change at or above threshold 0.773614422990495 -0.99023716599848 -0.72759782608335 0.944220569091335 568.098564147949 295.666041350241 0.520448492584539 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770961_at SPBC3B8.03.S1 --- 2.89387072389213 --- --- --- --- 0.810409665107727 0.491723001003265 1.0818532705307 2.34522080421448 0.633789002895355 0.696289002895355 0.780517995357513 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B8.03 /DEF=saccharopine dehydrogenase (NADP+, l-glutamate forming) (predicted) --- --- --- --- --- --- SPBC3B8.03 // |||saccharopine dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.84129001383927 -1.64810200754133 -1.83530927405396 1.33494616008422 2.89387072389213 Max fold change below threshold 0 2.89387072389213 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775592_at SPBC8D2.03c.S1 --- 2.89337288199112 --- --- --- --- 8.98292827606201 25.9909610748291 11.8449392318726 5.43789386749268 0.0375977009534836 0.0676269978284836 0.111571997404099 0.0461426004767418 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8D2.03c /GEN=hhf2 /DEF=histone H4 --- --- --- --- --- --- SPBC8D2.03c // |hhf2|ams3, h4.2|histone H4|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.56282629282078 2.89337288199112 -1.85545039660809 1.31860556689931 -1.65191312941234 Max fold change below threshold 4 2.89337288199112 Max fold change at or above threshold PAAAAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1772037_at SPBC1271.14.S1 --- 2.8921543131589 --- --- --- --- 2.71248483657837 5.68671703338623 2.66812610626221 3.65389180183411 0.567627012729645 0.432372987270355 0.5 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1271.14 /DEF=glutamate N-acetyltransferase (predicted) --- --- --- --- --- --- SPBC1271.14 // |||glutamate N-acetyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.8921543131589 2.09649726210439 -1.61174779579724 -1.01662542494227 1.34706441583034 Max fold change below threshold 4 2.8921543131589 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773903_at YLR070C.S1 Xylitol dehydrogenase, converts xylitol to D-xylulose in the endogenous xylose utilization pathway 2.89167067040702 233.224090576172 203.913360595703 XYL2 5996 // monosaccharide metabolism // inferred from direct assay --- 46526 // D-xylulose reductase activity // inferred from direct assay 189.381576538086 175.112091064453 291.336090087891 218.44514465332 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR070C /GEN=XYL2 /DB_XREF=GI:6323099 /SEG=NC_001144:-274142,275212 /DEF=XYLitol Dehydrogenase /NOTE=Xyl2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: D-xylulose reductase activity [goid GO:0046526] [evidence IDA] [pmid 10486580]; go_process: monosaccharide metabolism [goid GO:0005996] [evidence IDA] [pmid 10486580] --- --- --- --- --- --- S0004060 // XYL2 SGDID:S0004060, Chr XII from 275212-274142, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017871 // cdna:Genscan chromosome:SGD1:XII:274142:275212:-1 // ensembl // 11 // --- /// GENEFINDER00000024659 // cdna:GeneFinder chromosome:SGD1:XII:274142:275212:-1 // ensembl // 11 // --- /// YLR070C // cdna:known chromosome:SGD1:XII:274142:275212:-1 gene:YLR070C // ensembl // 11 // --- --- No cerevisiae_gene -2.83959385056071 -1.08148772244619 2.89167067040702 1.538354973137 1.1534656572541 Max fold change below threshold 4 2.89167067040702 Max fold change at or above threshold -0.563957751569136 -0.839674538109847 1.40602013594589 -0.00238784626690821 218.568725585938 51.7541410977015 0.236786580325979 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777912_at SPAC11G7.03.S1 --- 2.89151401324863 --- --- --- --- 9.31819438934326 5.55008792877197 3.22260046005249 5.12808752059937 0.111571997404099 0.432372987270355 0.5 0.26708984375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11G7.03 /GEN=idh1 /DEF=isocitrate dehydrogenase (NAD+) (subunit 1) (PMID 10975257) --- --- --- --- --- --- SPAC11G7.03 // |idh1|glu3|isocitrate dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.5366021317471 -1.67892734474299 -1.70232281000382 -2.89151401324863 -1.81708957811511 Max fold change below threshold 4 2.89151401324863 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773826_at YBL009W.S1 haspin 2.89146657658747 86.062328338623 255.920539855957 --- 7126 // meiosis // inferred from expression pattern 5634 // nucleus // inferred from sequence similarity 4674 // protein serine/threonine kinase activity // inferred from sequence similarity 228.505386352539 79.0275039672852 93.0971527099609 283.335693359375 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL009W /GEN=SCT1 /DB_XREF=GI:6319462 /SEG=NC_001134:+207159,209189 /DEF=haspin /NOTE=Ybl009wp; go_component: nucleus [goid GO:0005634] [evidence ISS] [pmid 12737306]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence ISS] [pmid 12737306]; go_process: meiosis [goid GO:0007126] [evidence IEP] [pmid 12737306] --- --- --- hanks // 1.9.1 // AGC group; AGC Other; DM // 7.0E-4 --- --- S0000105 // YBL009W SGDID:S0000105, Chr II from 207197-209227, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000021130 // cdna:Genscan chromosome:SGD1:II:207197:209227:1 // ensembl // 10 // --- /// GENEFINDER00000022126 // cdna:GeneFinder chromosome:SGD1:II:207197:209227:1 // ensembl // 10 // --- /// YBL009W // cdna:known chromosome:SGD1:II:207197:209227:1 gene:YBL009W // ensembl // 10 // --- --- No cerevisiae_gene 1.02766216354913 -2.89146657658747 1.23677202684495 -2.454483082468 1.2399519235938 Max fold change below threshold 4 2.89146657658747 Max fold change at or above threshold 0.570836686227352 -0.912759131816831 -0.773115248033503 1.11503769362298 170.99143409729 100.753777118562 0.589232891404579 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775458_at YMR198W.S1 CIK1 is important for proper organiziation of microtubule arrays and establishment of a spindle; is essential for karyogamy; and expression is regulated by KAR4 and mating; spindle pole body associated protein 2.89144003807895 64.7864093780518 178.831809997559 CIK1 70 // mitotic sister chromatid segregation // traceable author statement /// 132 // establishment of mitotic spindle orientation // traceable author statement /// 7126 // meiosis // inferred from mutant phenotype /// 7126 // meiosis // inferred from direct assay /// 30472 // mitotic spindle organization and biogenesis in nucleus // traceable author statement 5816 // spindle pole body // inferred from direct assay /// 5819 // spindle // inferred from direct assay /// 5871 // kinesin complex // inferred from direct assay /// 5881 // cytoplasmic microtubule // traceable author statement 3777 // microtubule motor activity // inferred from mutant phenotype /// 3777 // microtubule motor activity // inferred from sequence similarity 176.322174072266 60.9807472229004 68.5920715332031 181.341445922852 0.000244141003349796 0.000732421991415322 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR198W /GEN=CIK1 /DB_XREF=GI:6323854 /SEG=NC_001145:+659744,661528 /DEF=chromosome instability and karyogamy; CIK1 is important for proper organiziation of microtubule arrays and establishment of a spindle; is essential for karyogamy; and expression is regulated by KAR4 and mating /NOTE=Cik1p; go_component: cytoplasmic microtubule [goid GO:0005881] [evidence TAS] [pmid 9153752]; go_component: kinesin complex [goid GO:0005871] [evidence IDA] [pmid 10087265]; go_component: spindle [goid GO:0005819] [evidence IDA] [pmid 11729143]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 11729143]; go_function: microtubule motor activity [goid GO:0003777] [evidence IMP,ISS] [pmid 10087265]; go_process: meiosis [goid GO:0007126] [evidence IDA,IMP] [pmid 11729143]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence TAS] [pmid 10087265]; go_process: mitotic spindle assembly (sensu Fungi) [goid GO:0030472] [evidence TAS] [pmid 10087265]; go_process: mitotic spindle orientation (sensu Fungi) [goid GO:0030607] [evidence TAS] [pmid 10525539] --- --- --- --- --- --- S0004811 // CIK1 SGDID:S0004811, Chr XIII from 659744-661528, Verified ORF // sgd // 9 // --- /// GENSCAN00000018880 // cdna:Genscan chromosome:SGD1:XIII:659744:661528:1 // ensembl // 9 // --- /// GENEFINDER00000021857 // cdna:GeneFinder chromosome:SGD1:XIII:659744:661528:1 // ensembl // 9 // --- /// YMR198W // cdna:known chromosome:SGD1:XIII:659744:661528:1 gene:YMR198W // ensembl // 9 // --- --- No cerevisiae_gene 1.64771549355499 -2.89144003807895 -1.03484669103753 -2.57059117957844 1.0284664811842 Max fold change below threshold 4 2.89144003807895 Max fold change at or above threshold 0.826590950001041 -0.922350898534448 -0.806939081872522 0.902699030405929 121.809109687805 65.9492635195096 0.54141487191341 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778847_at YJR153W.S1 Endo-polygalacturonase, pectolytic enzyme that hydrolyzes the alpha-1,4-glycosidic bonds in the rhamnogalacturonan chains in pectins 2.89093626890103 83.1010627746582 204.18709564209 PGU1 7124 // pseudohyphal growth // non-traceable author statement /// 45490 // pectin catabolism // inferred from direct assay 5576 // extracellular region // inferred from direct assay 4650 // polygalacturonase activity // inferred from direct assay 186.212097167969 64.4123840332031 101.789741516113 222.162094116211 0.000244141003349796 0.000244141003349796 0.000244140625 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR153W /GEN=PGU1 /DB_XREF=GI:6322613 /SEG=NC_001142:+722730,723815 /DEF=Endo-polygalacturonase /NOTE=Pgu1p; go_component: extracellular [goid GO:0005576] [evidence IDA] [pmid 11935221]; go_function: polygalacturonase activity [goid GO:0004650] [evidence IDA] [pmid 10650215]; go_process: pectin catabolism [goid GO:0045490] [evidence IDA] [pmid 10028181]; go_process: pseudohyphal growth [goid GO:0007124] [evidence NAS] [pmid 11255250] --- --- --- --- --- --- S0003914 // PGU1 SGDID:S0003914, Chr X from 722730-723815, Verified ORF // sgd // 11 // --- /// GENSCAN00000024256 // cdna:Genscan chromosome:SGD1:X:722730:723815:1 // ensembl // 11 // --- /// GENEFINDER00000024391 // cdna:GeneFinder chromosome:SGD1:X:722730:723815:1 // ensembl // 11 // --- /// YJR153W // cdna:known chromosome:SGD1:X:722730:723815:1 gene:YJR153W // ensembl // 11 // --- --- No cerevisiae_gene -1.69878207463878 -2.89093626890103 2.2502911436924 -1.82937980187808 1.19305940642414 Max fold change below threshold 4 2.89093626890103 Max fold change at or above threshold 0.582767101609479 -1.0847022616056 -0.5729966354049 1.07493179540102 143.644079208374 73.0446482686324 0.508511375276887 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776495_at SPBC582.06c.S1 --- 2.89028035829487 --- --- --- --- 4.09532690048218 9.041090965271 11.7500152587891 1.41693067550659 0.219482004642487 0.366210997104645 0.24609400331974 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC582.06c /DEF=sequence orphan --- --- --- --- --- --- SPBC582.06c // |mcp6|hrs1|meiosis specific coiled-coil protein Mcp6|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.59868373176622 2.20766038584283 1.96639119438814 2.86912755545977 -2.89028035829487 Max fold change below threshold 3 2.89028035829487 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772491_at YJR053W.S1 Component of the GTPase-activating Bfa1p-Bub2p complex involved in multiple cell cycle checkpoint pathways that control exit from mitosis 2.88989247462198 56.0846481323242 25.0516586303711 BFA1 747 // conjugation with cellular fusion // inferred from mutant phenotype /// 7094 // mitotic spindle checkpoint // inferred from genetic interaction /// 7094 // mitotic spindle checkpoint // inferred from mutant phenotype 5816 // spindle pole body // inferred from direct assay 5096 // GTPase activator activity // traceable author statement 20.7314453125 52.2576484680176 59.9116477966309 29.3718719482422 0.00585938012227416 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR053W /GEN=BFA1 /DB_XREF=GI:6322513 /SEG=NC_001142:+533941,535665 /DEF=Byr four alike /NOTE=Bfa1p; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 10220406]; go_function: GTPase activator activity [goid GO:0005096] [evidence TAS] [pmid 12432084]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IMP] [pmid 9301024]; go_process: mitotic spindle checkpoint [goid GO:0007094] [evidence IGI,IMP] [pmid 10220406] --- --- --- --- --- --- S0003814 // BFA1 SGDID:S0003814, Chr X from 533941-535665, Verified ORF // sgd // 10 // --- /// GENSCAN00000024174 // cdna:Genscan chromosome:SGD1:X:533941:535665:1 // ensembl // 10 // --- /// GENEFINDER00000024485 // cdna:GeneFinder chromosome:SGD1:X:534187:535665:1 // ensembl // 10 // --- /// YJR053W // cdna:known chromosome:SGD1:X:533941:535665:1 gene:YJR053W // ensembl // 10 // --- --- No cerevisiae_gene 1.45721691141834 2.52069489995996 2.08464136617363 2.88989247462198 1.41677878727213 Max fold change below threshold 4 2.88989247462198 Max fold change at or above threshold -1.07073470497572 0.630969011062717 1.04411229494647 -0.60434660103347 40.5681533813477 18.5262586303276 0.456670000632702 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1778183_at YOR328W.S1 ABC (ATP-binding cassette) membrane pump involved in the pleiotropic drug resistance network, regulated by Pdr1p and Pdr3p, similar to Pdr5p 2.88684193228284 1149.8046875 1452.44012451172 PDR10 6855 // multidrug transport // inferred from sequence similarity /// 6855 // multidrug transport // inferred from expression pattern 5886 // plasma membrane // inferred from sequence similarity 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from sequence similarity 1419.34753417969 1161.48620605469 1138.12316894531 1485.53271484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR328W /GEN=PDR10 /DB_XREF=GI:6324904 /SEG=NC_001147:+931798,936492 /DEF=Putative ABC transporter highly similar to Pdr5p /NOTE=Pdr10p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 9428726]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence ISS] [pmid 9428726]; go_process: multidrug transport [goid GO:0006855] [evidence IEP,ISS] [pmid 9428726] --- --- --- --- --- S0005855 // span:544-566,573-595,652-674,686-708,794-813,1257-1279,1292-1314,1335-1357,1381-1403,1416-1438,1531-1553 // numtm:11 S0005855 // PDR10 SGDID:S0005855, Chr XV from 931798-936492, Verified ORF // sgd // 11 // --- /// GENSCAN00000017780 // cdna:Genscan chromosome:SGD1:XV:931798:936492:1 // ensembl // 11 // --- /// GENEFINDER00000022871 // cdna:GeneFinder chromosome:SGD1:XV:931798:936492:1 // ensembl // 11 // --- /// YOR328W // cdna:known chromosome:SGD1:XV:931798:936492:1 gene:YOR328W // ensembl // 11 // --- --- No cerevisiae_gene -2.88684193228284 -1.22200980672934 1.30861047216915 -1.24709484255117 1.04663070817417 Max fold change below threshold 4 2.88684193228284 Max fold change at or above threshold 0.667709991559737 -0.788635100938472 -0.92058448895837 1.04150959833711 1301.12240600586 177.060594671738 0.136082964872823 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776906_at YPR054W.S1 Middle sporulation-specific mitogen-activated protein kinase (MAPK) required for spore morphogenesis 2.88587349834029 43.8224868774414 60.9210186004639 SMK1 6468 // protein amino acid phosphorylation // inferred from sequence similarity /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 4707 // MAP kinase activity // inferred from sequence similarity 57.6821098327637 48.2871704101563 39.3578033447266 64.1599273681641 0.000244141003349796 0.0375977009534836 0.014160200022161 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR054W /GEN=SMK1 /DB_XREF=GI:6325311 /SEG=NC_001148:+666275,667441 /DEF=SMK1 encodes a mitogen-activated protein kinase required for spore morphogenesis that is expressed as a middle sporulation-specific gene. /NOTE=Smk1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: MAP kinase activity [goid GO:0004707] [evidence ISS] [pmid 7958885]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence ISS] [pmid 7958885]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence IMP] [pmid 7958885] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-69 /// hanks // 3.1.3 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk3 // 4.0E-71 --- --- S0006258 // SMK1 SGDID:S0006258, Chr XVI from 666277-667443, Verified ORF // sgd // 11 // --- /// GENSCAN00000017226 // cdna:Genscan chromosome:SGD1:XVI:666277:667443:1 // ensembl // 11 // --- /// YPR054W // cdna:known chromosome:SGD1:XVI:666277:667443:1 gene:YPR054W // ensembl // 11 // --- --- No cerevisiae_gene 2.88587349834029 -1.19456388400492 1.0854036358264 -1.46558255112813 1.11230202144445 Max fold change below threshold 4 2.88587349834029 Max fold change at or above threshold 0.489406018487555 -0.376437806235408 -1.1993741749024 1.08640596265025 52.3717527389526 10.8506166520428 0.207184523804803 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1771058_at SPAC31G5.04.S1 --- 2.88582087933211 --- --- --- --- 18.140380859375 12.3984756469727 6.28603839874268 13.3979454040527 0.149657994508743 0.0805663987994194 0.303710997104645 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31G5.04 /DEF=homoisocitrate dehydrogenase (predicted) --- --- --- --- --- --- SPAC31G5.04 // |||homoisocitrate dehydrogenase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.43073148955678 -1.4631138033331 -1.01937291975571 -2.88582087933211 -1.35396736680892 Max fold change below threshold 4 2.88582087933211 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1771922_at SPBC3D6.02.S1 --- 2.88407729538862 --- --- --- --- 10.325234413147 8.36179161071777 10.4942712783813 3.58008241653442 0.149657994508743 0.194580003619194 0.111571997404099 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3D6.02 /GEN=but2 /DEF=neddylation pathway (PMID 14623327) --- --- --- --- --- --- SPBC3D6.02 // |but2||neddylation pathway protein But2 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- X59599 // gb // 2 // Cross Hyb Matching Probes No No -1.34741351582277 -1.23481125742389 -2.41967381940869 1.01637123754005 -2.88407729538862 Max fold change below threshold 4 2.88407729538862 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776275_at YJL077W-B.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 2.88373810427288 273.964347839355 109.80810546875 --- --- --- --- 101.534652709961 255.129348754883 292.799346923828 118.081558227539 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL077W-B /GEN=PRY3 /DB_XREF=GI:33438822 /SEG=NC_001142:+293963,294061 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Yjl077w-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028662 // YJL077W-B SGDID:S0028662, Chr X from 293963-294061, Uncharacterized ORF // sgd // 11 // --- /// YJL077W-B // cdna:known chromosome:SGD1:X:293963:294061:1 gene:YJL077W-B // ensembl // 11 // --- --- No cerevisiae_gene 1.36355070312999 2.51273178117498 1.45198555793919 2.88373810427288 1.16296806140506 Max fold change below threshold 4 2.88373810427288 Max fold change at or above threshold -0.93869233989157 0.657053681251985 1.04841973257057 -0.766781073930986 191.886226654053 96.2525953439957 0.501612841225584 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774433_at YDR027C.S1 Component of the GARP (Golgi-associated retrograde protein) complex, Vps51p-Vps52p-Vps53p-Vps54p, which is required for the recycling of proteins from endosomes to the late Golgi; potentially phosphorylated by Cdc28p 2.88369748467297 618.910949707031 1623.28265380859 VPS54 6896 // Golgi to vacuole transport // inferred from mutant phenotype /// 42147 // retrograde transport, endosome to Golgi // inferred from direct assay 938 // GARP complex // inferred from physical interaction /// 5739 // mitochondrion // inferred from direct assay /// 5794 // Golgi apparatus // traceable author statement /// 5794 // Golgi apparatus // inferred from direct assay --- 1593.23986816406 685.322937011719 552.498962402344 1653.32543945313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR027C /GEN=VPS54 /DB_XREF=GI:6320230 /SEG=NC_001136:-494645,497314 /DEF=Component of the GARP (Golgi-associated retrograde protein) complex, Vps51p-Vps52p-Vps53p-Vps54p, which is required for retrograde transport to the late Golgi; potentially phosphorylated by Cdc28p /NOTE=Vps54p; go_component: GARP complex [goid GO:0000938] [evidence IPI] [pmid 10637310]; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 10637310]; go_component: Golgi apparatus [goid GO:0005794] [evidence TAS] [pmid 11689439]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi to vacuole transport [goid GO:0006896] [evidence IMP] [pmid 10637310]; go_process: retrograde transport, endosome to Golgi [goid GO:0042147] [evidence IDA] [pmid 12686613] --- --- --- --- --- --- S0002434 // VPS54 SGDID:S0002434, Chr IV from 497314-494645, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023928 // cdna:GeneFinder chromosome:SGD1:IV:494645:496417:-1 // ensembl // 11 // --- /// GENSCAN00000025117 // cdna:Genscan chromosome:SGD1:IV:494645:497314:-1 // ensembl // 11 // --- /// YDR027C // cdna:known chromosome:SGD1:IV:494645:497314:-1 gene:YDR027C // ensembl // 11 // --- --- No cerevisiae_gene -1.64610657412424 -2.32480161121007 -1.41537974545588 -2.88369748467297 1.03771282183536 Max fold change below threshold 4 2.88369748467297 Max fold change at or above threshold 0.80996140095808 -0.747570037779529 -0.975429557933664 0.913038194755113 1121.09680175781 582.920452564487 0.519955503976555 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779160_at YLR220W.S1 Functions in the homeostasis of both calcium and manganese ions; Possible transmembrane Ca2+ transporter 2.88302798638561 1013.86502075195 2187.01977539063 CCC1 6874 // calcium ion homeostasis // inferred from mutant phenotype /// 6874 // calcium ion homeostasis // inferred from genetic interaction /// 6879 // iron ion homeostasis // inferred from mutant phenotype /// 6879 // iron ion homeostasis // inferred from genetic interaction /// 30026 // manganese ion homeostasis // inferred from mutant phenotype /// 30026 // manganese ion homeostasis // inferred from genetic interaction 5624 // membrane fraction // inferred from sequence similarity /// 5794 // Golgi apparatus // inferred from direct assay --- 2268.54516601563 786.861999511719 1240.86804199219 2105.49438476563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR220W /GEN=CCC1 /DB_XREF=GI:6323249 /SEG=NC_001144:+576827,577795 /DEF=Functions in the homeostasis of both calcium and manganese ions /NOTE=Ccc1p; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 8866476]; go_component: membrane fraction [goid GO:0005624] [evidence ISS] [pmid 7941738]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: calcium ion homeostasis [goid GO:0006874] [evidence IGI,IMP] [pmid 7941738]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IGI,IMP] [pmid 10713071]; go_process: manganese ion homeostasis [goid GO:0030026] [evidence IGI,IMP] [pmid 8866476] --- --- --- --- --- AAA62622.1 // span:234-256,263-281,301-318 // numtm:3 /// S0004210 // span:234-256,263-281,301-318 // numtm:3 S0004210 // CCC1 SGDID:S0004210, Chr XII from 576827-577795, Verified ORF // sgd // 11 // --- /// L24112 // Saccharomyces cerevisiae Ccc1p (CCC1) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000017990 // cdna:Genscan chromosome:SGD1:XII:576827:577795:1 // ensembl // 11 // --- /// YLR220W // cdna:known chromosome:SGD1:XII:576827:577795:1 gene:YLR220W // ensembl // 11 // --- --- No cerevisiae_gene -1.14507948027321 -2.88302798638561 1.05876617433069 -1.82819211168782 -1.07744061557692 Max fold change below threshold 4 2.88302798638561 Max fold change at or above threshold 0.947164791396107 -1.15340744786413 -0.509766141240456 0.716008797708478 1600.44239807129 705.371202575596 0.44073513887513 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774197_at SPBP35G2.02.S1 --- 2.88179991029705 --- --- --- --- 0.665797054767609 0.681815922260284 0.322133630514145 0.231035143136978 0.805419981479645 0.888427972793579 0.904784977436066 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP35G2.02 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBP35G2.02 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.09210903736701 1.02405968512172 -1.02015268561526 -2.06683497685403 -2.88179991029705 Max fold change below threshold 0 2.88179991029705 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780112_at YPL161C.S1 Protein involved in establishment of cell polarity and bud emergence; interacts with the Rho1p small GTP-binding protein and with the Rho-type GTPase Cdc42p 2.88126401475945 105.77311706543 309.319778442383 BEM4 7266 // Rho protein signal transduction // inferred from genetic interaction /// 30036 // actin cytoskeleton organization and biogenesis // traceable author statement /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 282.694641113281 113.431434631348 98.1147994995117 335.944915771484 0.000244141003349796 0.00292969006113708 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL161C /GEN=BEM4 /DB_XREF=GI:6325096 /SEG=NC_001148:-244318,246219 /DEF=Involved in polarity establishment and bud emergence; interacts with the Rho1p small GTP-binding protein /NOTE=Bem4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Rho protein signal transduction [goid GO:0007266] [evidence IGI] [pmid 8754839]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence TAS] [pmid 9891811]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IMP] [pmid 8754839] --- --- --- --- --- --- S0006082 // BEM4 SGDID:S0006082, Chr XVI from 246219-244318, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017065 // cdna:Genscan chromosome:SGD1:XVI:244318:246219:-1 // ensembl // 11 // --- /// GENEFINDER00000020991 // cdna:GeneFinder chromosome:SGD1:XVI:244318:245505:-1 // ensembl // 11 // --- /// YPL161C // cdna:known chromosome:SGD1:XVI:244318:246219:-1 gene:YPL161C // ensembl // 11 // --- --- No cerevisiae_gene 1.07445469440929 -2.49220722661262 -1.45134421877507 -2.88126401475945 1.18836676368713 Max fold change below threshold 4 2.88126401475945 Max fold change at or above threshold 0.627935442723727 -0.786421466573961 -0.91440668661182 1.07289271046205 207.546447753906 119.675030658268 0.57661806286451 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778704_at YML121W.S1 Cytoplasmic GTP binding protein and negative regulator of the Ran/Tc4 GTPase cycle, through its homolog and binding partner, Gtr2p; involved in phosphate transport and invasive growth; human RagA and RagB proteins are functional homologs 2.88071823702324 697.423278808594 494.765335083008 GTR1 6817 // phosphate transport // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5774 // vacuolar membrane // inferred from direct assay 3924 // GTPase activity // inferred from physical interaction /// 3924 // GTPase activity // inferred from sequence similarity 481.532531738281 670.214233398438 724.63232421875 507.998138427734 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML121W /GEN=GTR1 /DB_XREF=GI:6323514 /SEG=NC_001145:+26930,27862 /DEF=Cytoplasmic GTP binding protein and negative regulator of the Ran/Tc4 GTPase cycle, through its homolog and binding partner, Gtr2p; involved in phosphate transport and invasive growth; human RagA and RagB proteins are functional homologs /NOTE=Gtr1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10388807]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10388807]; go_function: GTPase activity [goid GO:0003924] [evidence IPI,ISS] [pmid 10388807]; go_process: phosphate transport [goid GO:0006817] [evidence IMP] [pmid 1620108] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 0.0920000001788139 --- S0004590 // GTR1 SGDID:S0004590, Chr XIII from 26930-27862, Verified ORF // sgd // 11 // --- /// GENSCAN00000018614 // cdna:Genscan chromosome:SGD1:XIII:27092:27862:1 // ensembl // 11 // --- /// YML121W // cdna:known chromosome:SGD1:XIII:26930:27862:1 gene:YML121W // ensembl // 11 // --- --- No cerevisiae_gene 2.88071823702324 1.39183583501417 -1.2126353141118 1.50484604145623 1.05496120188166 Max fold change below threshold 4 2.88071823702324 Max fold change at or above threshold -0.958001179387484 0.619813867488664 1.07487486048952 -0.736687548590698 596.094306945801 119.58416928126 0.200612835733949 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772299_at SPCC736.15.S1 --- 2.88026066878646 --- --- --- --- 0.823752701282501 1.66898310184479 0.576508581638336 0.345727205276489 0.953857004642487 0.943848013877869 0.976073980331421 0.980224609375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC736.15 /DEF=hypothetical protein --- --- --- --- --- --- SPCC736.15 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.88026066878646 2.0260729940507 -1.63290685622815 -1.42886459546108 -2.38266670574484 Max fold change below threshold 0 2.88026066878646 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773246_at SPCC16C4.18c.S1 --- 2.87992875447124 --- --- --- --- 4.26979637145996 11.4422607421875 8.39122009277344 8.41561698913574 0.432372987270355 0.0461426004767418 0.0952147990465164 0.030273400247097 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16C4.18c /GEN=taf50 /DEF=transcription initiation factor activity --- --- --- --- --- --- SPCC16C4.18c // |taf50||histone H4-like TAF |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.23411542823806 2.67981415195102 -2.87992875447124 1.96525064962389 1.97096448097318 Max fold change below threshold 4 2.87992875447124 Max fold change at or above threshold AAPAAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1770718_at YOR076C.S1 Antiviral adaptor protein that mediates interactions via its N-terminus between the exosome and Ski complex (Ski2p, Ski3p, Ski8p) which operate in the 3'-to-5' mRNA-decay pathway; cytoplasmic protein required for degrading nonstop mRNAs 2.87962306723958 187.607284545898 537.032867431641 SKI7 6402 // mRNA catabolism // inferred from direct assay /// 43330 // response to exogenous dsRNA // inferred from mutant phenotype 178 // exosome (RNase complex) // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 5515 // protein binding // inferred from direct assay 512.46630859375 197.251586914063 177.962982177734 561.599426269531 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR076C /GEN=SKI7 /DB_XREF=GI:6324650 /SEG=NC_001147:-469378,471621 /DEF=Antiviral protein. Ski7p G protein appears to function as a signal-coupling factor between the two multi-complexes operating in the 3'-to-5' mRNA-decay pathway. /NOTE=Ski7p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12730603]; go_component: exosome (RNase complex) [goid GO:0000178] [evidence IDA] [pmid 11910110]; go_function: 3'-5' exonuclease activity [goid GO:0008408] [evidence TAS] [pmid 9858562]; go_process: mRNA catabolism [goid GO:0006402] [evidence IDA] [pmid 11910110] --- --- --- --- --- --- S0005602 // SKI7 SGDID:S0005602, Chr XV from 471621-469378, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017517 // cdna:Genscan chromosome:SGD1:XV:469378:471621:-1 // ensembl // 11 // --- /// YOR076C // cdna:known chromosome:SGD1:XV:469378:471621:-1 gene:YOR076C // ensembl // 11 // --- --- No cerevisiae_gene 1.02463278835975 -2.5980338947388 -1.38490940335771 -2.87962306723958 1.0958758007148 Max fold change below threshold 4 2.87962306723958 Max fold change at or above threshold 0.740042897600966 -0.813591928602327 -0.908661879356978 0.982210910358339 362.32007598877 202.888552936211 0.559970496756298 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772942_at YFR005C.S1 Conserved zinc-finger domain protein involved in pre-mRNA splicing, required for assembly of U4 snRNA into the U4/U6 particle 2.87932414325027 128.109493255615 389.906036376953 SAD1 398 // nuclear mRNA splicing, via spliceosome // inferred from direct assay 5634 // nucleus // inferred from direct assay 31202 // RNA splicing factor activity, transesterification mechanism // inferred from mutant phenotype 350.493591308594 134.491256713867 121.727729797363 429.318481445313 0.000244141003349796 0.00415039015933871 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR005C /GEN=SAD1 /DB_XREF=GI:14318527 /SEG=NC_001138:-154522,155868 /DEF=Conserved zinc-finger domain protein involved in pre-mRNA splicing, required for assembly of U4 snRNA into the U4/U6 particle /NOTE=Sad1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10022888]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IMP] [pmid 10022888]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IDA] [pmid 10022888] --- --- --- --- --- --- S0001901 // SAD1 SGDID:S0001901, Chr VI from 155868-154522, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000023247 // cdna:Genscan chromosome:SGD1:VI:154522:155577:-1 // ensembl // 11 // --- /// YFR005C // cdna:known chromosome:SGD1:VI:154522:155868:-1 gene:YFR005C // ensembl // 11 // --- --- No cerevisiae_gene 1.85752114023071 -2.60606971689079 -1.00946632817899 -2.87932414325027 1.22489680864754 Max fold change below threshold 4 2.87932414325027 Max fold change at or above threshold 0.591667143796439 -0.805286780796108 -0.887832458143097 1.10145209514277 259.007764816284 154.623807408486 0.596985219798957 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769498_at SPAC8F11.03.S1 --- 2.8793171673701 --- --- --- --- 0.412645548582077 1.18813741207123 0.559325754642487 0.396645992994308 0.932372987270355 0.828612983226776 0.850341975688934 0.79931640625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8F11.03 /GEN=swi4 /DEF=MutS family --- --- --- --- --- --- SPAC8F11.03 // |msh3|swi4|MutS family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.06184649858115 2.8793171673701 -1.52614810068723 1.35546295498504 -1.04033711639688 Max fold change below threshold 0 2.8793171673701 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778706_at YNR002C.S1 Putative transmembrane protein, involved in ammonia production; member of the TC 9.B.33 YaaH family; homolog of Ady2p and Y. lipolytica Gpr1p 2.87766138609833 4809.22216796875 1913.58612060547 FUN34 6810 // transport // inferred from mutant phenotype /// 19740 // nitrogen utilization // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 16020 // membrane // inferred from sequence similarity /// 16021 // integral to membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity 1872.3447265625 5387.97412109375 4230.47021484375 1954.82751464844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR002C /GEN=FUN34 /DB_XREF=GI:6324329 /SEG=NC_001146:-633007,633855 /DEF=Putative transmembrane protein, involved in ammonia production; member of the TC 9.B.33 YaaH family; homolog of Ady2p and Y. lipolytica Gpr1p /NOTE=Fun34p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 12524434]; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 12429834]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 12429834]; go_process: nitrogen utilization [goid GO:0019740] [evidence IMP] [pmid 12429834]; go_process: transport [goid GO:0006810] [evidence IMP] [pmid 12429834] --- --- --- --- --- S0005285 // span:116-138,150-172,182-204,211-230,234-256 // numtm:5 S0005285 // FUN34 SGDID:S0005285, Chr XIV from 633856-633008, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020039 // cdna:Genscan chromosome:SGD1:XIV:633008:633856:-1 // ensembl // 11 // --- /// GENEFINDER00000020490 // cdna:GeneFinder chromosome:SGD1:XIV:633008:633856:-1 // ensembl // 11 // --- /// YNR002C // cdna:known chromosome:SGD1:XIV:633008:633856:-1 gene:YNR002C // ensembl // 11 // --- --- No cerevisiae_gene 1.71301546304376 2.87766138609833 2.16937136496945 2.25945049265079 1.04405320607673 Max fold change below threshold 4 2.87766138609833 Max fold change at or above threshold -0.856951173937202 1.16628759068869 0.500146052284825 -0.809482469036314 3361.40414428711 1737.62457303516 0.516934143723345 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772681_s_at YOR394W.S1 Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme 2.87721346663489 155.938575744629 185.046752929688 PAU3 --- --- --- 143.823608398438 137.402374267578 174.47477722168 226.269897460938 0.000244141003349796 0.014160200022161 0.00415039015933871 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR394W /GEN=ERR1 /DB_XREF=GI:6324970 /SEG=NC_001147:+1082714,1083208 /DEF=Hypothetical ORF /NOTE=Yor394wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000701 // span:7-29 // numtm:1 /// S0005921 // span:44-66 // numtm:1 /// S0006203 // span:44-66 // numtm:1 S0005921 // YOR394W SGDID:S0005921, Chr XV from 1082714-1083208, Uncharacterized ORF // sgd // 11 // --- /// S0006203 // YPL282C SGDID:S0006203, Chr XVI from 8427-7933, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017837 // cdna:Genscan chromosome:SGD1:XV:1082714:1083208:1 // ensembl // 11 // --- /// GENEFINDER00000022880 // cdna:GeneFinder chromosome:SGD1:XV:1082714:1083208:1 // ensembl // 11 // --- /// GENSCAN00000016967 // cdna:Genscan chromosome:SGD1:XVI:7933:8427:-1 // ensembl // 11 // --- /// GENEFINDER00000020853 // cdna:GeneFinder chromosome:SGD1:XVI:7933:8427:-1 // ensembl // 11 // --- /// YOR394W // cdna:known chromosome:SGD1:XV:1082714:1083208:1 gene:YOR394W // ensembl // 11 // --- /// YPL282C // cdna:known chromosome:SGD1:XVI:7933:8427:-1 gene:YPL282C // ensembl // 11 // --- --- No cerevisiae_gene -2.87721346663489 -1.04673306531337 1.35158945444885 1.21311639420372 1.57324586679885 Max fold change below threshold 4 2.87721346663489 Max fold change at or above threshold -0.657666235398514 -0.816015630561143 0.0981999961195773 1.37548186984008 170.492664337158 40.55104930628 0.237846299510507 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1773937_at SPCC584.14.S1 --- 2.87718538924612 --- --- --- --- 3.88244867324829 6.00435590744019 11.170524597168 7.02616167068481 0.0461426004767418 0.398925989866257 0.00415039015933871 0.0239257998764515 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC584.14 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC584.14 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.48391486947139 1.54653838666631 1.44533568490135 2.87718538924612 1.80972429052264 Max fold change below threshold 4 2.87718538924612 Max fold change at or above threshold PPAPPP No 3 0 PAPP 1 3 0 No No 2 < x = 3
1779394_at YDL027C.S1 Hypothetical protein 2.87648139337053 577.035995483398 623.336730957031 --- --- 5739 // mitochondrion // inferred from direct assay --- 608.838256835938 672.013610839844 482.058380126953 637.835205078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL027C /GEN=MPS1 /DB_XREF=GI:6320178 /SEG=NC_001136:-403692,404954 /DEF=Hypothetical ORF /NOTE=Ydl027cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002185 // span:123-145,149-169 // numtm:2 S0002185 // YDL027C SGDID:S0002185, Chr IV from 404954-403692, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023839 // cdna:GeneFinder chromosome:SGD1:IV:403692:404300:-1 // ensembl // 11 // --- /// GENSCAN00000025080 // cdna:Genscan chromosome:SGD1:IV:403692:404357:-1 // ensembl // 11 // --- /// YDL027C // cdna:known chromosome:SGD1:IV:403692:404954:-1 gene:YDL027C // ensembl // 11 // --- --- No cerevisiae_gene -2.87648139337053 1.10376377189604 1.15321518172156 -1.26299693550726 1.04762668560429 Max fold change below threshold 4 2.87648139337053 Max fold change at or above threshold 0.104394708610284 0.866675541629803 -1.425345354609 0.454275104368918 600.186363220215 82.8767447210477 0.138085017920741 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773816_at YBR244W.S1 Phospholipid hydroperoxide glutathione peroxidase induced by glucose starvation that protects cells from phospholipid hydroperoxides and nonphospholipid peroxides during oxidative stress 2.87611749284647 109.264831542969 260.341659545898 GPX2 6979 // response to oxidative stress // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4602 // glutathione peroxidase activity // inferred from direct assay 283.025238037109 98.4053115844727 120.124351501465 237.658081054688 0.00195312988944352 0.00585938012227416 0.00292969006113708 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR244W /GEN=GPX2 /DB_XREF=GI:6319721 /SEG=NC_001134:+707485,707973 /DEF=Phospholipid hydroperoxide glutathione peroxidase induced by glucose starvation that protects cells from phospholipid hydroperoxides and nonphospholipid peroxides during oxidative stress /NOTE=Gpx2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: glutathione peroxidase activity [goid GO:0004602] [evidence IDA] [pmid 11445588]; go_process: response to oxidative stress [goid GO:0006979] [evidence IMP] [pmid 11445588] --- --- --- --- --- --- S0000448 // GPX2 SGDID:S0000448, Chr II from 707523-708011, Verified ORF // sgd // 11 // --- /// YBR244W // cdna:known chromosome:SGD1:II:707523:708011:1 gene:YBR244W // ensembl // 11 // --- --- No cerevisiae_gene -1.49239046162194 -2.87611749284647 1.21673430433836 -2.3561021100177 -1.19089254941843 Max fold change below threshold 4 2.87611749284647 Max fold change at or above threshold 1.09612119918395 -0.964169068208121 -0.721792595538695 0.589840464562864 184.803245544434 89.6086970727332 0.484887031116496 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1779958_at SPAC1556.07.S1 --- 2.87595184731341 --- --- --- --- 4.02909374237061 11.5874795913696 9.61453342437744 2.27401757240295 0.398925989866257 0.00415039015933871 0.0239257998764515 0.171387001872063 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1556.07 /GEN=pmm1 /DEF=phosphomannomutase --- --- --- --- --- --- AB000703 // Fission yeast mRNA for phosphomannomutase, partial cds. // gb // 11 // --- /// SPAC1556.07 // |pmm1||phosphomannomutase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.88527951411608 2.87595184731341 -1.01931034116697 2.38627692457722 -1.77179534198281 Max fold change below threshold 3 2.87595184731341 Max fold change at or above threshold AAPAPA No 3 0 APPA 2 2 0 No No 1 < x = 2
1774914_at YCR016W.S1 Hypothetical protein 2.87580434268619 134.445724487305 195.833312988281 --- --- 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 159.212356567383 140.397796630859 128.49365234375 232.45426940918 0.000244141003349796 0.00122069998178631 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR016W /GEN=POL4 /DB_XREF=GI:10383784 /SEG=NC_001135:+143631,144503 /DEF=Hypothetical ORF /NOTE=Ycr016wp; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000609 // YCR016W SGDID:S0000609, Chr III from 143631-144503, Uncharacterized ORF // sgd // 11 // --- /// YCR016W // cdna:known chromosome:SGD1:III:143631:144503:1 gene:YCR016W // ensembl // 11 // --- --- No cerevisiae_gene 2.87580434268619 -1.13400894022569 2.06444900447483 -1.23906787349661 1.46002656088316 Max fold change below threshold 4 2.87580434268619 Max fold change at or above threshold -0.127125999076409 -0.530661394320707 -0.785981932571439 1.44376932596855 165.139518737793 46.6243114191587 0.282332852702498 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775985_x_at SPCC1223.05c.S1 --- 2.87576681891663 --- --- --- --- 21.2199115753174 46.3819999694824 15.6132431030273 45.6262359619141 0.0952147990465164 0.0561522990465164 0.018554700538516 0.0676269978284836 A M P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1223.05c /GEN=rpl3702 /DEF=60S ribosomal protein L37 --- --- --- --- --- --- SPCC1223.05c // |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 1.56790427622694 2.18577725005382 2.87576681891663 -1.35909698166443 2.15016145566722 Max fold change below threshold 4 2.87576681891663 Max fold change at or above threshold AAMAPA No 4 0 AMPA 2 1 1 No No x = 1
1776516_at YDL082W.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl13Ap; not essential for viability; has similarity to rat L13 ribosomal protein /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl13Bp; not essential for viability; has similarity to rat L13 ribosomal protein 2.87488461433373 525.519607543945 1317.58990478516 RPL13B /// RPL13A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 1294.03576660156 450.117462158203 600.921752929688 1341.14404296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL082W /GEN=RPL13A /DB_XREF=GI:6320121 /SEG=NC_001136:+308424,309388 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl13Bp; not essential for viability; has similarity to rat L13 ribosomal protein /NOTE=Rpl13ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0002240 // RPL13A SGDID:S0002240, Chr IV from 308424-308427,308793-309388, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023558 // cdna:GeneFinder chromosome:SGD1:IV:308631:309388:1 // ensembl // 11 // --- /// YDL082W // cdna:known chromosome:SGD1:IV:308424:309388:1 gene:YDL082W // ensembl // 11 // --- --- No cerevisiae_gene 2.72461387369053 -2.87488461433373 -1.65127816741497 -2.15341807863124 1.03640415325683 Max fold change below threshold 4 2.87488461433373 Max fold change at or above threshold 0.806535835926226 -1.02080659511233 -0.694268969540657 0.908539728726764 921.554756164551 461.828221196464 0.501140293734213 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779838_at SPBPB10D8.03.S1 --- 2.87381390905241 --- --- --- --- 7.26206302642822 19.2323112487793 6.49742984771729 6.17419767379761 0.303710997104645 0.0676269978284836 0.334473013877869 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB10D8.03 /DEF=pseudo transporter --- --- --- --- --- --- SPBPB10D8.03 // |||pseudo transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.2455355357492 2.6483261269957 2.87381390905241 -1.11768240621783 -1.17619542005391 Max fold change below threshold 4 2.87381390905241 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770103_at SPCC550.09.S1 --- 2.87342031224179 --- --- --- --- 7.92634391784668 6.8264799118042 5.81751537322998 7.38666772842407 0.171387001872063 0.0676269978284836 0.171387001872063 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC550.09 /DEF=pex24 family --- --- --- --- --- --- SPCC550.09 // |||pex24 family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.87342031224179 -1.1611172991428 -1.73419571138156 -1.36249642834134 -1.07306084546702 Max fold change below threshold 4 2.87342031224179 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1777212_at YIL071C.S1 Possible shared subunit of Cop9 signalosome (CSN) and eIF3, binds eIF3b subunit Prt1p, has possible dual functions in transcriptional and translational control, contains a PCI (Proteasome-COP9 signalosome (CSN)-eIF3) domain 2.87274262857053 52.5520057678223 137.87003326416 PCI8 338 // protein deneddylation // inferred from mutant phenotype 8180 // signalosome complex // traceable author statement /// 8180 // signalosome complex // inferred from direct assay --- 133.957931518555 47.4614372253418 57.6425743103027 141.782135009766 0.000244141003349796 0.00195312988944352 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL071C /GEN=PCI8 /DB_XREF=GI:13432314 /SEG=NC_001141:-228657,229991 /DEF=subunit of COP9 signalosome (CSN); Proteasome-COP9 signalosome-eukarytotic Initiation factor 3 (PCI) domain-containing protein /NOTE=Pci8p; go_component: signalosome complex [goid GO:0008180] [evidence TAS] [pmid 12186635]; go_component: signalosome complex [goid GO:0008180] [evidence IDA] [pmid 12446563]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein deneddylation [goid GO:0000338] [evidence IMP] [pmid 12446563] --- --- --- --- --- --- S0001333 // PCI8 SGDID:S0001333, Chr IX from 229991-228657, reverse complement, Verified ORF // sgd // 11 // --- /// YIL071C // cdna:known chromosome:SGD1:IX:228657:229991:-1 gene:YIL071C // ensembl // 11 // --- YIL071W-A // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene -2.87274262857053 -2.82245838621652 1.57735599921951 -2.32394082189025 1.05840791510077 Max fold change below threshold 4 2.87274262857053 Max fold change at or above threshold 0.782188698987175 -0.963926716189231 -0.7583988441831 0.940136861385157 95.2110195159912 49.5365275063873 0.520281452275252 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776549_at SPAC1B3.12c.S1 --- 2.87227844131965 --- --- --- --- 2.92116689682007 5.95029830932617 8.39040470123291 4.34060382843018 0.334473013877869 0.432372987270355 0.129638999700546 0.111083984375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B3.12c /GEN=rpb10 /DEF=DNA-directed RNA polymerase (I, II, and III subunit) --- --- --- --- --- --- X95733 // Schizosaccharomyces pombe mRNA for subunit Rbp10 of RNA polymerase I, II and III (rpb10 gene). // gb // 11 // --- /// U80219 // Schizosaccharomyces pombe RNA polymerases I-III common subunit Rpb10 (rpb10) mRNA, complete cds. // gb // 11 // --- /// SPAC1B3.12c // |rpb10||DNA-directed RNA polymerase I, II, and III subunit Rpb10|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.50013869129656 2.03695937941908 1.27598291646065 2.87227844131965 1.48591435605931 Max fold change below threshold 4 2.87227844131965 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775695_at SPCC1682.03c.S1 --- 2.87188568496366 --- --- --- --- 4.34708166122437 12.4843215942383 10.4679670333862 3.89496302604675 0.466064006090164 0.0239257998764515 0.0375977009534836 0.0561522990465164 A P P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1682.03c /DEF=sequence orphan --- --- --- --- --- --- SPCC1682.03c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.24081244611039 2.87188568496366 1.18991035037494 2.40804471808287 -1.11607777330726 Max fold change below threshold 4 2.87188568496366 Max fold change at or above threshold AAPPPM No 4 0 APPM 1 2 1 No No 1 < x = 2
1777931_at SPAC22H12.02.S1 --- 2.87088120476497 --- --- --- --- 3.05513954162598 8.77094268798828 3.19078421592712 2.7338330745697 0.274170011281967 0.0805663987994194 0.219482004642487 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22H12.02 /GEN=taf14 /DEF=transcription initiation factor activity --- --- --- --- --- --- SPAC22H12.02 // |tfg3|taf14|transcription factor TFIIF complex|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.31811091722498 2.87088120476497 -1.62204573308351 1.04439884740222 -1.11752965828276 Max fold change below threshold 4 2.87088120476497 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773483_at YBR004C.S1 Functional ortholog of human PIG-V, which is a mannosyltransferase that transfers the second mannose in glycosylphosphatidylinositol biosynthesis; the authentic, non-tagged protein was localized to mitochondria 2.87075711205105 1828.72943115234 758.300109863281 GPI18 6506 // GPI anchor biosynthesis // inferred from genetic interaction /// 6506 // GPI anchor biosynthesis // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from sequence similarity 30 // mannosyltransferase activity // inferred from genetic interaction /// 30 // mannosyltransferase activity // inferred from sequence similarity /// 30 // mannosyltransferase activity // inferred from mutant phenotype 725.370849609375 2082.36352539063 1575.09533691406 791.229370117188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR004C /GEN=COQ1 /DB_XREF=GI:6319476 /SEG=NC_001134:-244330,245631 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ybr004cp --- --- --- --- --- S0000208 // span:7-25,108-130,151-168,198-220,247-269,322-339,352-371,410-432 // numtm:8 S0000208 // FMP44 SGDID:S0000208, Chr II from 245669-244368, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YBR004C // cdna:known chromosome:SGD1:II:244368:245669:-1 gene:YBR004C // ensembl // 11 // --- --- No cerevisiae_gene 1.09409939487446 2.87075711205105 -1.00599424632261 2.17143456724554 1.0907928965484 Max fold change below threshold 4 2.87075711205105 Max fold change at or above threshold -0.870930275492803 1.20925744013207 0.431645981331294 -0.769973145970562 1293.51477050781 652.3414524509 0.504316972116833 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779681_at YDR403W.S1 Sporulation-specific enzyme required for spore wall maturation, involved in the production of a soluble LL-dityrosine-containing precursor of the spore wall; transcripts accumulate at the time of prospore enclosure 2.86968163995251 114.072673797607 54.9016933441162 DIT1 30476 // spore wall assembly (sensu Fungi) // inferred from direct assay /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype --- 3824 // catalytic activity // inferred from direct assay 52.1491661071777 109.602989196777 118.542358398438 57.6542205810547 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR403W /GEN=DIT1 /DB_XREF=GI:6320611 /SEG=NC_001136:+1274590,1276200 /DEF=Sporulation-specific enzyme required for spore wall maturation, involved in the production of a soluble LL-dityrosine-containing precursor of the spore wall; transcripts accumulate at the time of prospore enclosure /NOTE=Dit1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: catalytic activity [goid GO:0003824] [evidence IDA] [pmid 8183942]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence IDA,IMP] [pmid 8183942] --- --- --- --- --- --- S0002811 // DIT1 SGDID:S0002811, Chr IV from 1274592-1276202, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023790 // cdna:GeneFinder chromosome:SGD1:IV:1274592:1276202:1 // ensembl // 11 // --- /// GENSCAN00000025420 // cdna:Genscan chromosome:SGD1:IV:1274592:1276202:1 // ensembl // 11 // --- /// YDR403W // cdna:known chromosome:SGD1:IV:1274592:1276202:1 gene:YDR403W // ensembl // 11 // --- --- No cerevisiae_gene -1.1682312768908 2.10172084001343 2.86968163995251 2.27314005663691 1.10556361462354 Max fold change below threshold 4 2.86968163995251 Max fold change at or above threshold -0.939234366338142 0.729470438582702 0.989107962033636 -0.779344034278196 84.4871835708618 34.4301897616487 0.407519677026174 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775624_at YMR186W.S1 Cytoplasmic chaperone of the Hsp90 family, redundant in function and nearly identical with Hsp82p, and together they are essential; expressed constitutively at 10-fold higher basal levels that HSP82 and induced 2-3 fold by heat shock /// Cytoplasmic chaperone (Hsp90 family) required for pheromone signaling and negative regulation of Hsf1p; docks with the mitochondrial import receptor Tom70p for preprotein delivery; interacts with co-chaperones Cns1p, Cpr6p, Cpr7p, and Sti1p 2.8688956449408 7505.45068359375 3051.78918457031 HSC82 /// HSP82 6457 // protein folding // inferred from mutant phenotype /// 6950 // response to stress // inferred from mutant phenotype /// 43248 // proteasome assembly // inferred from mutant phenotype /// 43248 // proteasome assembly // inferred from physical interaction /// 43248 // proteasome assembly // inferred from genetic interaction /// 43248 // proteasome assembly // inferred from direct assay 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 51082 // unfolded protein binding // inferred from sequence similarity /// 42623 // ATPase activity, coupled // inferred from direct assay 3325.12768554688 9539.4443359375 5471.45703125 2778.45068359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR186W /GEN=HSC82 /DB_XREF=GI:6323840 /SEG=NC_001145:+632354,634471 /DEF=constitutively expressed heat shock protein /NOTE=Hsc82p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14576278]; go_function: cation-transporting ATPase activity [goid GO:0019829] [evidence TAS] [pmid 9847145]; go_function: chaperone activity [goid GO:0003754] [evidence TAS] [pmid 9847145]; go_function: heat shock protein activity [goid GO:0003773] [evidence TAS] [pmid 9847145]; go_process: protein folding [goid GO:0006457] [evidence IMP] [pmid 7791797]; go_process: response to stress [goid GO:0006950] [evidence IMP] [pmid 2674684] --- --- --- --- --- --- S0004798 // HSC82 SGDID:S0004798, Chr XIII from 632354-634471, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021913 // cdna:GeneFinder chromosome:SGD1:XIII:632354:634471:1 // ensembl // 11 // --- /// GENSCAN00000018871 // cdna:Genscan chromosome:SGD1:XIII:633485:634471:1 // ensembl // 11 // --- /// YMR186W // cdna:known chromosome:SGD1:XIII:632354:634471:1 gene:YMR186W // ensembl // 11 // --- --- No cerevisiae_gene 1.3654218958785 2.8688956449408 -1.31974916891418 1.64548779736563 -1.19675605731682 Max fold change below threshold 4 2.8688956449408 Max fold change at or above threshold -0.636495806205092 1.38828135345351 0.0628310676534363 -0.814616614901853 5278.61993408203 3069.13608776505 0.581427745526593 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780180_x_at YOR293W.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Ap and has similarity to rat ribosomal protein S10 /// Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Bp and has similarity to rat ribosomal protein S10 2.86874405484248 1531.15582275391 3864.55053710938 RPS10B /// RPS10A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 4026.39819335938 1658.77124023438 1403.54040527344 3702.70288085938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR293W /GEN=RPS10A /DB_XREF=GI:6324867 /SEG=NC_001147:+867095,867849 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Bp and has similarity to rat ribosomal protein S10 /NOTE=Rps10ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0005819 // RPS10A SGDID:S0005819, Chr XV from 867095-867146,867584-867849, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022906 // cdna:GeneFinder chromosome:SGD1:XV:867095:867849:1 // ensembl // 11 // --- /// YOR293W // cdna:known chromosome:SGD1:XV:867095:867849:1 gene:YOR293W // ensembl // 11 // --- GENSCAN00000017741 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 1.22876982453506 -2.42733783640381 -2.20144920504095 -2.86874405484248 -1.08742135756377 Max fold change below threshold 4 2.86874405484248 Max fold change at or above threshold 0.97855771497772 -0.765349791168428 -0.953343498665653 0.740135574856362 2697.85317993164 1357.65626604659 0.503235786196857 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772680_at SPCC162.03.S1 --- 2.86738532452554 --- --- --- --- 5.92718505859375 9.14444351196289 16.9955234527588 5.15891408920288 0.334473013877869 0.303710997104645 0.030273400247097 0.219482004642487 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC162.03 /DEF=short chain dehydrogenase (predicted) --- --- --- --- --- --- SPCC162.03 // |||short chain dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.26572725090361 1.5427970312323 1.30565610808765 2.86738532452554 -1.14892106286453 Max fold change below threshold 4 2.86738532452554 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1775762_at YLR197W.S1 Essential evolutionarily-conserved nucleolar protein component of the box C/D snoRNP complexes that direct 2'-O-methylation of pre-rRNA during its maturation; overexpression causes spindle orientation defects 2.86646754760393 941.585418701172 808.027587890625 SIK1 154 // rRNA modification // traceable author statement /// 6365 // 35S primary transcript processing // traceable author statement /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 30532 // small nuclear ribonucleoprotein complex // traceable author statement /// 31428 // box C/D snoRNP complex // inferred from direct assay /// 31428 // box C/D snoRNP complex // inferred from mutant phenotype --- 780.598937988281 968.502014160156 914.668823242188 835.456237792969 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR197W /GEN=SIK1 /DB_XREF=GI:6323226 /SEG=NC_001144:+546099,547613 /DEF=part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA); similar to microtubule binding proteins and to X90565_5.cds /NOTE=Sik1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence TAS] [pmid 10690410]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IPI] [pmid 12068309]; go_process: rRNA modification [goid GO:0000154] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0004187 // SIK1 SGDID:S0004187, Chr XII from 546099-547613, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024634 // cdna:GeneFinder chromosome:SGD1:XII:546099:547625:1 // ensembl // 11 // --- /// YLR197W // cdna:known chromosome:SGD1:XII:546099:547613:1 gene:YLR197W // ensembl // 11 // --- YLR198C // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene 2.86646754760393 1.24071654088607 -1.49627590379953 1.17175258475168 1.07027590883747 Max fold change below threshold 4 2.86646754760393 Max fold change at or above threshold -1.13163126240231 1.12548041014044 0.478830413415393 -0.472679561153525 874.806503295898 83.2493484738361 0.0951631568354693 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778551_at SPAC323.05c.S1 --- 2.86601428500755 --- --- --- --- 5.4361743927002 3.29932498931885 12.6090841293335 5.50873374938965 0.274170011281967 0.303710997104645 0.0805663987994194 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC323.05c /DEF=DNA methyltransferase (predicted) --- --- --- --- --- --- SPAC323.05c // |||protein methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.49973632698401 -1.64766260077414 2.86601428500755 2.31947748885047 1.01334750349196 Max fold change below threshold 4 2.86601428500755 Max fold change at or above threshold AMAPAA No 4 0 AAAA 4 0 0 No No x = 1
1772866_at SPCC338.17c.S1 --- 2.86504289018039 --- --- --- --- 5.29420185089111 3.27699208259583 10.2287330627441 1.84786128997803 0.303710997104645 0.688720703125 0.219482004642487 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC338.17c /GEN=rad21 /DEF=mitotic cohesin complex (subunit) (PMID 11069892) --- --- --- --- --- --- SPCC338.17c // |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.18408248731479 -1.61556748306129 -1.67949704394648 1.9320632931709 -2.86504289018039 Max fold change below threshold 3 2.86504289018039 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769329_at YNL320W.S1 Hypothetical protein 2.86461984886567 120.971286773682 364.095886230469 --- --- --- --- 318.818450927734 111.295204162598 130.647369384766 409.373321533203 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL320W /GEN=KRE1 /DB_XREF=GI:6324009 /SEG=NC_001146:+37699,38553 /DEF=Hypothetical ORF /NOTE=Ynl320wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005264 // span:5-27,80-102 // numtm:2 S0005264 // YNL320W SGDID:S0005264, Chr XIV from 37699-38553, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019787 // cdna:Genscan chromosome:SGD1:XIV:37720:38553:1 // ensembl // 11 // --- /// YNL320W // cdna:known chromosome:SGD1:XIV:37699:38553:1 gene:YNL320W // ensembl // 11 // --- --- No cerevisiae_gene -1.54982322934686 -2.86461984886567 1.24689694490585 -2.44029751558787 1.28403271624325 Max fold change below threshold 4 2.86461984886567 Max fold change at or above threshold 0.524765093971748 -0.902791432607059 -0.769667504579838 1.14769384321515 242.533586502075 145.369547826224 0.599379038271801 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769804_at YGL104C.S1 Mitochondrial protein of unknown function involved in vacuolar protein sorting 2.86437960056783 551.051483154297 1551.43249511719 VPS73 6623 // protein-vacuolar targeting // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay --- 1529.72119140625 534.049743652344 568.05322265625 1573.14379882813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL104C /GEN=VPS73 /DB_XREF=GI:6321334 /SEG=NC_001139:-308714,310174 /DEF=Vps73p /NOTE=go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 12134085] --- --- --- --- --- S0003072 // span:27-44,91-113,145-167,209-228,306-324,339-361,368-385,395-417,429-451,455-476 // numtm:10 S0003072 // VPS73 SGDID:S0003072, Chr VII from 310176-308716, reverse complement, Verified ORF // sgd // 11 // --- /// YGL104C // cdna:known chromosome:SGD1:VII:308716:310176:-1 gene:YGL104C // ensembl // 11 // --- --- No cerevisiae_gene -1.83465162341688 -2.86437960056783 1.02590732328738 -2.69291878013328 1.02838596187712 Max fold change below threshold 4 2.86437960056783 Max fold change at or above threshold 0.827805866832707 -0.894782412819467 -0.835953775590126 0.902930321576886 1051.24198913574 578.008952873494 0.549834347226458 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777371_at YPL110C.S1 Hypothetical protein 2.86399877729556 325.732833862305 660.151885986328 --- --- 5737 // cytoplasm // inferred from direct assay --- 599.311584472656 209.256927490234 442.208740234375 720.9921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL110C /GEN=CAR1 /DB_XREF=GI:6325147 /SEG=NC_001148:-341067,344738 /DEF=Hypothetical ORF /NOTE=Ypl110cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006031 // YPL110C SGDID:S0006031, Chr XVI from 344738-341067, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017105 // cdna:Genscan chromosome:SGD1:XVI:341067:344738:-1 // ensembl // 11 // --- /// GENEFINDER00000020913 // cdna:GeneFinder chromosome:SGD1:XVI:341067:344570:-1 // ensembl // 11 // --- /// YPL110C // cdna:known chromosome:SGD1:XVI:341067:344738:-1 gene:YPL110C // ensembl // 11 // --- --- No cerevisiae_gene -1.56970401476549 -2.86399877729556 1.01700192919509 -1.35526851901438 1.2030339579276 Max fold change below threshold 4 2.86399877729556 Max fold change at or above threshold 0.481556150188584 -1.28430441499982 -0.229681909281168 1.0324301740924 492.942359924316 220.886441813035 0.448097911177584 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776344_at YKL006W.S1 N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl14Bp and has similarity to rat L14 ribosomal protein; rpl14a csh5 double null mutant exhibits synthetic slow growth /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl14Ap and has similarity to rat L14 ribosomal protein 2.86362392024453 1541.20953369141 3003.54272460938 RPL14A /// RPL14B 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3723 // RNA binding // inferred from direct assay /// 3735 // structural constituent of ribosome // traceable author statement 3300.84497070313 1152.68103027344 1929.73803710938 2706.24047851563 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL006W /GEN=RPL14A /DB_XREF=GI:6322847 /SEG=NC_001143:+431549,432363 /DEF=N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl14Bp and has similarity to rat L14 ribosomal protein; rpl14a csh5 double null mutant exhibits synthetic slow growth /NOTE=Rpl14ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 6337137]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0001489 // RPL14A SGDID:S0001489, Chr XI from 431549-431677,432076-432363, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022976 // cdna:GeneFinder chromosome:SGD1:XI:431549:432363:1 // ensembl // 11 // --- /// YKL006W // cdna:known chromosome:SGD1:XI:431549:432363:1 gene:YKL006W // ensembl // 11 // --- --- No cerevisiae_gene 1.12879832719206 -2.86362392024453 -1.53951886864855 -1.71051453991526 -1.21971605883068 Max fold change below threshold 4 2.86362392024453 Max fold change at or above threshold 1.10113671057222 -1.19880868355698 -0.366847653855189 0.464519626839948 2272.37612915039 934.006496812079 0.411026363474999 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774175_at YNR054C.S1 Essential protein of unknown function, has homology to mouse mABT1, which is a basal transcription activator that associates with TBP 2.862568004989 88.2253761291504 246.076049804688 --- --- 5730 // nucleolus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 30528 // transcription regulator activity // inferred from sequence similarity 223.185760498047 77.9669723510742 98.4837799072266 268.966339111328 0.00415039015933871 0.0561522990465164 0.00805663969367743 0.00195312988944352 P M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR054C /GEN=NOG2 /DB_XREF=GI:6324382 /SEG=NC_001146:-723354,724304 /DEF=Protein required for cell viability /NOTE=Ynr054cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_function: transcription regulator activity [goid GO:0030528] [evidence ISS] [pmid 10648625]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005337 // ESF2 SGDID:S0005337, Chr XIV from 724305-723355, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020081 // cdna:Genscan chromosome:SGD1:XIV:723355:724305:-1 // ensembl // 11 // --- /// GENEFINDER00000020485 // cdna:GeneFinder chromosome:SGD1:XIV:723355:724305:-1 // ensembl // 11 // --- /// YNR054C // cdna:known chromosome:SGD1:XIV:723355:724305:-1 gene:YNR054C // ensembl // 11 // --- --- No cerevisiae_gene 1.23719427660453 -2.862568004989 -1.13231283498529 -2.26621846468821 1.20512320549089 Max fold change below threshold 4 2.862568004989 Max fold change at or above threshold 0.599894765740362 -0.954774940716722 -0.735128023208515 1.09000819818488 167.150712966919 93.40812877734 0.55882578733497 PPMPPP Called_P_>2EXP 2 0 PMPP 0 3 1 Yes Yes 2 < x = 3
1778339_at SPAC16C9.07.S1 --- 2.86176510269913 --- --- --- --- 2.99353647232056 8.56679821014404 7.05651378631592 1.74434554576874 0.780517995357513 0.5 0.753906011581421 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16C9.07 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPAC16C9.07 // ||SPAC2G11.01|serine/threonine protein kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.71702171623649 2.86176510269913 2.14521398155211 2.35724997893404 -1.71613730982487 Max fold change below threshold 3 2.86176510269913 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770221_at YJR057W.S1 Thymidylate and uridylate kinase, functions in de novo biosynthesis of pyrimidine deoxyribonucleotides; converts dTMP to dTDP and dUMP to dUTP; essential for mitotic and meiotic DNA replication; homologous to S. pombe Tmp1p 2.86127413486494 68.8485774993896 204.688247680664 CDC8 6227 // dUDP biosynthesis // inferred from direct assay /// 6233 // dTDP biosynthesis // inferred from direct assay /// 6235 // dTTP biosynthesis // inferred from direct assay /// 6261 // DNA-dependent DNA replication // inferred from direct assay /// 6261 // DNA-dependent DNA replication // inferred from mutant phenotype /// 6276 // plasmid maintenance // inferred from mutant phenotype /// 6280 // mutagenesis // inferred from mutant phenotype /// 6281 // DNA repair // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4798 // thymidylate kinase activity // inferred from direct assay /// 9041 // uridylate kinase activity // inferred from direct assay 181.559219360352 63.4539756774902 74.2431793212891 227.817276000977 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR057W /GEN=CDC8 /DB_XREF=GI:6322517 /SEG=NC_001142:+543976,544626 /DEF=Thymidylate and uridylate kinase, functions in de novo biosynthesis of pyrimidine deoxyribonucleotides; converts dTMP to dTDP and dUMP to dUTP; essential for mitotic and meiotic DNA replication; homologous to S. pombe Tmp1p /NOTE=Cdc8p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 6094555]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 6094555]; go_function: thymidylate kinase activity [goid GO:0004798] [evidence IDA] [pmid 6088527]; go_function: uridylate kinase activity [goid GO:0009041] [evidence IDA] [pmid 6094555]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 2249248]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence IMP] [pmid 1098780]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence IDA] [pmid 6356128]; go_process: dTDP biosynthesis [goid GO:0006233] [evidence IDA] [pmid 6094555]; go_process: dTTP biosynthesis [goid GO:0006235] [evidence IDA] [pmid 6094555]; go_process: dUDP biosynthesis [goid GO:0006227] [evidence IDA] [pmid 6094555]; go_process: mutagenesis [goid GO:0006280] [evidence IMP] [pmid 45608]; go_process: plasmid maintenance [goid GO:0006276] [evidence IMP] [pmid 1657418] --- --- --- --- --- --- S0003818 // CDC8 SGDID:S0003818, Chr X from 543976-544626, Verified ORF // sgd // 11 // --- /// GENSCAN00000024178 // cdna:Genscan chromosome:SGD1:X:543979:544626:1 // ensembl // 11 // --- /// GENEFINDER00000024326 // cdna:GeneFinder chromosome:SGD1:X:543979:544626:1 // ensembl // 11 // --- /// YJR057W // cdna:known chromosome:SGD1:X:543976:544626:1 gene:YJR057W // ensembl // 11 // --- --- No cerevisiae_gene -1.04464918939297 -2.86127413486494 1.20486718467996 -2.44546665458183 1.25478219615394 Max fold change below threshold 4 2.86127413486494 Max fold change at or above threshold 0.554418054551067 -0.907481923511261 -0.77393377544992 1.12699764441011 136.768412590027 80.7888675389432 0.590698290701915 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774315_at YDR436W.S1 Serine/threonine protein phosphatase Z, isoform of Ppz1p; involved in regulation of potassium transport, which affects osmotic stability, cell cycle progression, and halotolerance 2.86056254298431 1343.57385253906 1740.77630615234 PPZ2 6883 // sodium ion homeostasis // inferred from mutant phenotype /// 6883 // sodium ion homeostasis // inferred from genetic interaction --- 4722 // protein serine/threonine phosphatase activity // traceable author statement 1722.21508789063 1179.80407714844 1507.34362792969 1759.33752441406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR436W /GEN=PPZ2 /DB_XREF=GI:6320644 /SEG=NC_001136:+1334809,1336941 /DEF=Serine/threonine protein phosphatase Z, isoform of Ppz1p; involved in regulation of potassium transport, which affects osmotic stability, cell cycle progression, and halotolerance /NOTE=Ppz2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein serine/threonine phosphatase activity [goid GO:0004722] [evidence TAS] [pmid 7768897]; go_process: sodium ion homeostasis [goid GO:0006883] [evidence IGI,IMP] [pmid 7768897] --- --- --- --- --- --- S0002844 // PPZ2 SGDID:S0002844, Chr IV from 1334811-1336943, Verified ORF // sgd // 11 // --- /// GENSCAN00000025443 // cdna:Genscan chromosome:SGD1:IV:1334811:1336943:1 // ensembl // 11 // --- /// GENEFINDER00000023706 // cdna:GeneFinder chromosome:SGD1:IV:1335249:1336943:1 // ensembl // 11 // --- /// YDR436W // cdna:known chromosome:SGD1:IV:1334811:1336943:1 gene:YDR436W // ensembl // 11 // --- X61289 // gb // 4 // Cross Hyb Matching Probes No cerevisiae_gene -2.86056254298431 -1.45974668273158 1.44485315329479 -1.14254975174842 1.02155505243477 Max fold change below threshold 4 2.86056254298431 Max fold change at or above threshold 0.677110291515013 -1.36283672122331 -0.130997184530264 0.81672361423856 1542.1750793457 265.894656750953 0.172415350443715 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779298_at SPAC22A12.07c.S1 --- 2.86026364420742 --- --- --- --- 0.754502415657043 0.613592863082886 1.77616441249847 1.27535438537598 0.633789002895355 0.919434010982513 0.725830018520355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22A12.07c /DEF=glycosyl transferase family 39 --- --- --- --- --- --- SPAC22A12.07c // |ogm1|oma1|protein O-mannosyltransferase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.51177087242119 -1.22964666157651 -2.86026364420742 2.35408711177119 1.69032511879417 Max fold change below threshold 0 2.86026364420742 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777252_at SPBC25B2.02c.S1 --- 2.86023851327148 --- --- --- --- 0.825015604496002 0.786990463733673 0.892904937267303 1.88442254066467 0.805419981479645 0.870360970497131 0.753906011581421 0.45751953125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25B2.02c /GEN=mam1 /DEF=ABC transporter family (PMID 9236781) --- --- --- --- --- --- SPBC25B2.02c // |mam1|SPBC2G5.09c|ABC transporter family |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.12028218213992 -1.04831715568945 -2.86023851327148 1.08228854387885 2.28410533133595 Max fold change below threshold 0 2.86023851327148 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775858_at YDL056W.S1 Transcription factor involved in regulation of cell cycle progression from G1 to S phase, forms a complex with Swi6p that binds to MluI cell cycle box regulatory element in promoters of DNA synthesis genes 2.85940198284376 206.136222839355 466.498672485352 MBP1 74 // regulation of cell cycle // inferred from mutant phenotype /// 74 // regulation of cell cycle // inferred from genetic interaction /// 6260 // DNA replication // inferred from physical interaction /// 6260 // DNA replication // inferred from mutant phenotype 5634 // nucleus // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay 3677 // DNA binding // inferred from direct assay /// 3700 // transcription factor activity // inferred from physical interaction /// 3700 // transcription factor activity // inferred from mutant phenotype 445.68310546875 203.399475097656 208.872970581055 487.314239501953 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL056W /GEN=MBP1 /DB_XREF=GI:6320147 /SEG=NC_001136:+352877,355378 /DEF=transcription factor /NOTE=Mbp1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 8372350]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 12564929]; go_function: transcription factor activity [goid GO:0003700] [evidence IMP,IPI] [pmid 8372350]; go_process: DNA replication [goid GO:0006260] [evidence IMP,IPI] [pmid 8372350]; go_process: regulation of cell cycle [goid GO:0000074] [evidence IGI,IMP] [pmid 8372350] --- --- --- --- --- --- S0002214 // MBP1 SGDID:S0002214, Chr IV from 352877-355378, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023592 // cdna:GeneFinder chromosome:SGD1:IV:352877:355378:1 // ensembl // 11 // --- /// GENSCAN00000025057 // cdna:Genscan chromosome:SGD1:IV:352877:355378:1 // ensembl // 11 // --- /// YDL056W // cdna:known chromosome:SGD1:IV:352877:355378:1 gene:YDL056W // ensembl // 11 // --- --- No cerevisiae_gene -2.85940198284376 -2.19117136489545 -1.18146190959543 -2.13375193654269 1.09340971987129 Max fold change below threshold 4 2.85940198284376 Max fold change at or above threshold 0.722865613277273 -0.878537501448942 -0.842359767517315 0.998031655688985 336.317447662354 151.294591688437 0.449856505334595 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774229_at YKL214C.S1 Member of the REF (RNA and export factor binding proteins) family; when overexpressed, can substitute for the function of Yra1p in export of poly(A)+ mRNA from the nucleus 2.85905420825878 382.261611938477 828.197235107422 YRA2 16973 // poly(A)+ mRNA-nucleus export // inferred from genetic interaction 5634 // nucleus // inferred from direct assay 3723 // RNA binding // inferred from direct assay 872.732055664063 305.252014160156 459.271209716797 783.662414550781 0.000244141003349796 0.000244140625 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL214C /GEN=YRA2 /DB_XREF=GI:6322635 /SEG=NC_001143:-31083,31694 /DEF=Member of the REF (RNA and export factor binding proteins) family; when overexpressed, can substitute for the function of Yra1p in export of poly(A)+ mRNA from the nucleus /NOTE=Yra2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11390651]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 11390651]; go_process: poly(A)+ mRNA-nucleus export [goid GO:0016973] [evidence IGI] [pmid 11390651] --- --- --- --- --- --- S0001697 // YRA2 SGDID:S0001697, Chr XI from 31694-31083, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018258 // cdna:Genscan chromosome:SGD1:XI:31083:31694:-1 // ensembl // 11 // --- /// GENEFINDER00000023118 // cdna:GeneFinder chromosome:SGD1:XI:31083:31694:-1 // ensembl // 11 // --- /// YKL214C // cdna:known chromosome:SGD1:XI:31083:31694:-1 gene:YKL214C // ensembl // 11 // --- --- No cerevisiae_gene -1.4401662670637 -2.85905420825878 1.47132935660105 -1.9002542227766 -1.113658176607 Max fold change below threshold 4 2.85905420825878 Max fold change at or above threshold 0.999969112149881 -1.12136520416477 -0.54561596012157 0.667012052136461 605.229423522949 267.510894977542 0.4419991569815 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779868_at SPAC25H1.02.S1 --- 2.85827638143257 --- --- --- --- 8.63690185546875 6.28444814682007 7.73875331878662 4.51158428192139 0.149657994508743 0.0805663987994194 0.0805663987994194 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25H1.02 /GEN=jmj1 /DEF=transcription factor --- --- --- --- --- --- SPAC25H1.02 // |jmj1||jmjC domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.43846517513233 -1.37432940071898 -2.85827638143257 -1.11605855616328 -1.91438335532778 Max fold change below threshold 4 2.85827638143257 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770212_at YOR275C.S1 Protein involved in proteolytic activation of Rim101p in response to alkaline pH; member of the PalA/AIP1/Alix family; interacts with the ESCRT-III subunits Snf7p, suggesting a relationship between the response to pH and multivesicular body formation 2.85820839915404 350.246025085449 650.509948730469 RIM20 1403 // invasive growth (sensu Saccharomyces) // inferred from mutant phenotype /// 6508 // proteolysis and peptidolysis // inferred from mutant phenotype /// 16485 // protein processing // inferred from genetic interaction /// 16485 // protein processing // inferred from mutant phenotype /// 16485 // protein processing // inferred from direct assay /// 30435 // sporulation // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 631.540588378906 479.535247802734 220.956802368164 669.479309082031 0.00122069998178631 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR275C /GEN=RIM20 /DB_XREF=GI:6324849 /SEG=NC_001147:-839081,841066 /DEF=Regulator of IME2 /NOTE=Rim20p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: invasive growth (sensu Saccharomyces) [goid GO:0001403] [evidence IMP] [pmid 11698381]; go_process: protein processing [goid GO:0016485] [evidence IDA,IGI,IMP] [pmid 11698381]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence IMP] [pmid 11698381]; go_process: sporulation [goid GO:0030435] [evidence IMP] [pmid 11698381] --- --- --- --- --- --- S0005801 // RIM20 SGDID:S0005801, Chr XV from 841066-839081, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017713 // cdna:Genscan chromosome:SGD1:XV:839081:841066:-1 // ensembl // 11 // --- /// GENEFINDER00000022736 // cdna:GeneFinder chromosome:SGD1:XV:839081:841066:-1 // ensembl // 11 // --- /// YOR275C // cdna:known chromosome:SGD1:XV:839081:841066:-1 gene:YOR275C // ensembl // 11 // --- --- No cerevisiae_gene -2.77203625023299 -1.31698470815789 -1.2007177272242 -2.85820839915404 1.06007328966854 Max fold change below threshold 4 2.85820839915404 Max fold change at or above threshold 0.644345030802935 -0.102391346467371 -1.37267521183747 0.830721527501911 500.377986907959 203.559576315041 0.406811613702111 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779945_at SPAC22E12.05c.S1 --- 2.8581539448278 --- --- --- --- 6.68495559692383 4.90074396133423 4.8483624458313 2.33890676498413 0.111571997404099 0.398925989866257 0.24609400331974 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22E12.05c /GEN=rer1 /DEF=involved in intracellular protein transport --- --- --- --- --- --- SPAC22E12.05c // |rer1||Rer1 family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.49887826144382 -1.36406954733131 -1.34499147494078 -1.37880690060036 -2.8581539448278 Max fold change below threshold 3 2.8581539448278 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771186_at YFR016C.S1 Hypothetical protein 2.85748249179589 831.116851806641 369.199310302734 --- --- 5737 // cytoplasm // inferred from direct assay /// 5933 // bud // inferred from direct assay --- 346.451873779297 672.253540039063 989.980163574219 391.946746826172 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR016C /GEN=GSY1 /DB_XREF=GI:14318538 /SEG=NC_001138:-177034,180735 /DEF=Hypothetical ORF /NOTE=Yfr016cp; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 14562095]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001912 // YFR016C SGDID:S0001912, Chr VI from 180735-177034, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018580 // cdna:GeneFinder chromosome:SGD1:VI:177034:180735:-1 // ensembl // 11 // --- /// GENSCAN00000023257 // cdna:Genscan chromosome:SGD1:VI:177034:180735:-1 // ensembl // 11 // --- /// YFR016C // cdna:known chromosome:SGD1:VI:177034:180735:-1 gene:YFR016C // ensembl // 11 // --- --- No cerevisiae_gene 1.16901872577358 1.94039516284248 -1.0656150252898 2.85748249179589 1.13131657378726 Max fold change below threshold 4 2.85748249179589 Max fold change at or above threshold -0.853825126959276 0.242630699034112 1.31191070440575 -0.700716276480582 600.158081054688 297.140713320201 0.495104077908976 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778153_at YHR022C.S1 Hypothetical protein 2.85595910026461 60.0927257537842 111.810077667236 --- --- --- --- 102.785957336426 74.8220748901367 45.3633766174316 120.834197998047 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR022C /GEN=ECM12 /DB_XREF=GI:6321811 /SEG=NC_001140:-149567,150337 /DEF=Hypothetical ORF /NOTE=Yhr022cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.Thanscriptional regulator IclR, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Thanscriptional regulator IclR, N-terminal domain // 3.0 --- S0001064 // YHR022C SGDID:S0001064, Chr VIII from 150337-149567, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016570 // cdna:Genscan chromosome:SGD1:VIII:149567:150337:-1 // ensembl // 11 // --- /// YHR022C // cdna:known chromosome:SGD1:VIII:149567:150337:-1 gene:YHR022C // ensembl // 11 // --- S0003531 // sgd // 1 // Negative Strand Matching Probes /// YHR021W-A // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene 2.85595910026461 -1.37373839855884 -1.08752413505119 -2.26583568069156 1.17559052938086 Max fold change below threshold 4 2.85595910026461 Max fold change at or above threshold 0.509790081705203 -0.337022286489584 -1.2291012063663 1.05633341115068 85.9514017105103 33.0225248196383 0.384199956748353 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774003_at YLL066W-B.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /// Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 2.85565540114302 170.184310913086 134.764961242676 --- --- --- --- 124.487823486328 157.555236816406 182.813385009766 145.042098999023 0.00292969006113708 0.00195312988944352 0.00122069998178631 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL066W-B /DB_XREF=GI:33438827 /SEG=NC_001144:+5605,5775 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Yll066w-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028672 // YLL066W-B SGDID:S0028672, Chr XII from 5605-5775, Uncharacterized ORF // sgd // 11 // --- /// YLL066W-B // cdna:known chromosome:SGD1:XII:5605:5775:1 gene:YLL066W-B // ensembl // 11 // --- YDR544C // ensembl // 4 // Cross Hyb Matching Probes /// YHR217C // ensembl // 6 // Cross Hyb Matching Probes /// YNL338W // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene -2.85565540114302 1.26562769276555 -1.44172153387618 1.46852422903709 1.16511073080937 Max fold change below threshold 4 2.85565540114302 Max fold change at or above threshold -1.14742572815753 0.20829853284685 1.24385229545803 -0.304725100147343 152.474636077881 24.3909578674798 0.15996731321937 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770810_at SPCC1620.13.S1 --- 2.85555995956144 --- --- --- --- 3.47829174995422 1.35923898220062 2.53986620903015 1.37195694446564 0.466064006090164 0.870360970497131 0.366210997104645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1620.13 /DEF=phosphoglycerate mutase family --- --- --- --- --- --- SPCC1620.13 // |||phosphoglycerate mutase family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.32390748463973 -2.55899940739106 -2.85555995956144 -1.3694783361374 -2.53527762950971 Max fold change below threshold 2 2.85555995956144 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778641_at YJR056C.S1 Hypothetical protein 2.8546900119736 123.06494140625 301.883117675781 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 305.113159179688 106.881362915039 139.248519897461 298.653076171875 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR056C /GEN=HIT1 /DB_XREF=GI:6322516 /SEG=NC_001142:-541706,542416 /DEF=Hypothetical ORF /NOTE=Yjr056cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003817 // YJR056C SGDID:S0003817, Chr X from 542416-541706, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024177 // cdna:Genscan chromosome:SGD1:X:541706:542416:-1 // ensembl // 11 // --- /// YJR056C // cdna:known chromosome:SGD1:X:541706:542416:-1 gene:YJR056C // ensembl // 11 // --- --- No cerevisiae_gene -1.07100656179718 -2.8546900119736 1.23209382565302 -2.19114112957441 -1.02163072649583 Max fold change below threshold 4 2.8546900119736 Max fold change at or above threshold 0.889765711602063 -1.01417980206499 -0.703304834032282 0.827718924495212 212.474029541016 104.116317847168 0.490019029958997 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773129_at YLL002W.S1 Protein with a role in regulation of Ty1 transposition 2.85397484072997 54.8944320678711 167.442718505859 RTT109 335 // negative regulation of DNA transposition // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 152.987396240234 53.6050262451172 56.183837890625 181.898040771484 0.00805663969367743 0.0375977009534836 0.018554700538516 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL002W /GEN=RTT109 /DB_XREF=GI:6323027 /SEG=NC_001144:+146290,147600 /DEF=Regulator of Ty1 Transposition; Regulation of mitochondrial network; Killed in Mutagen, sensitive to diepoxybutane and/or mitomycin C /NOTE=Rtt109p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: negative regulation of DNA transposition [goid GO:0000335] [evidence IMP] [pmid 11779788] --- --- --- --- --- --- S0003925 // RTT109 SGDID:S0003925, Chr XII from 146290-147600, Verified ORF // sgd // 11 // --- /// GENSCAN00000017738 // cdna:Genscan chromosome:SGD1:XII:146290:147600:1 // ensembl // 11 // --- /// GENEFINDER00000024576 // cdna:GeneFinder chromosome:SGD1:XII:146290:147600:1 // ensembl // 11 // --- /// YLL002W // cdna:known chromosome:SGD1:XII:146290:147600:1 gene:YLL002W // ensembl // 11 // --- --- No cerevisiae_gene -1.30259612204712 -2.85397484072997 -1.27950320546361 -2.72297874235755 1.18897402819937 Max fold change below threshold 4 2.85397484072997 Max fold change at or above threshold 0.633125615783038 -0.871496532012522 -0.832454022591437 1.07082493882092 111.168575286865 66.0513805015588 0.594155140795106 PPPPPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1774779_at YER031C.S1 GTPase of the Ypt/Rab family, very similar to Ypt32p; involved in the exocytic pathway; mediates intra-Golgi traffic or the budding of post-Golgi vesicles from the trans-Golgi 2.85386187258107 663.505401611328 1744.48803710938 YPT31 6887 // exocytosis // inferred from mutant phenotype /// 16192 // vesicle-mediated transport // inferred from genetic interaction /// 16192 // vesicle-mediated transport // inferred from mutant phenotype 5768 // endosome // inferred from direct assay /// 5794 // Golgi apparatus // traceable author statement /// 5794 // Golgi apparatus // inferred from direct assay 3924 // GTPase activity // inferred from sequence similarity /// 3924 // GTPase activity // inferred from physical interaction 1737.22570800781 608.72802734375 718.282775878906 1751.75036621094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER031C /GEN=YPT31 /DB_XREF=GI:6320869 /SEG=NC_001137:-214075,214746 /DEF=probably involved in intra-Golgi transport or in the formation of transport vesicles at the most distal Golgi compartment /NOTE=Ypt31p; go_component: Golgi apparatus [goid GO:0005794] [evidence TAS] [pmid 12221137]; go_function: GTPase activity [goid GO:0003924] [evidence IPI] [pmid 10071213]; go_function: GTPase activity [goid GO:0003924] [evidence ISS] [pmid 9151665]; go_process: exocytosis [goid GO:0006887] [evidence IMP] [pmid 9151665]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IGI,IMP] [pmid 9151665] --- --- --- --- --- --- S0000833 // YPT31 SGDID:S0000833, Chr V from 214746-214075, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016831 // cdna:Genscan chromosome:SGD1:V:214075:214746:-1 // ensembl // 11 // --- /// GENEFINDER00000019770 // cdna:GeneFinder chromosome:SGD1:V:214075:214746:-1 // ensembl // 11 // --- /// YER031C // cdna:known chromosome:SGD1:V:214075:214746:-1 gene:YER031C // ensembl // 11 // --- --- No cerevisiae_gene -1.33592040436146 -2.85386187258107 -1.17243069311335 -2.4185818821593 1.00836083540335 Max fold change below threshold 4 2.85386187258107 Max fold change at or above threshold 0.852165255301143 -0.951312302415876 -0.776230391562306 0.875377438677038 1203.99671936035 625.73425204836 0.519714250036158 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777639_at YGR123C.S1 Protein serine/threonine phosphatase with similarity to human phosphatase PP5; present in both the nucleus and cytoplasm; expressed during logarithmic growth 2.85332955590676 104.289329528809 207.678733825684 PPT1 6470 // protein amino acid dephosphorylation // inferred from direct assay /// 6470 // protein amino acid dephosphorylation // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4722 // protein serine/threonine phosphatase activity // inferred from sequence similarity /// 4722 // protein serine/threonine phosphatase activity // inferred from direct assay 192.1708984375 69.6448669433594 138.933792114258 223.186569213867 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR123C /GEN=PPT1 /DB_XREF=GI:6321562 /SEG=NC_001139:-736665,738206 /DEF=Protein serine/threonine phosphatase with similarity to human phosphatase PP5; present in both the nucleus and cytoplasm; expressed during logarithmic growth /NOTE=Ppt1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12694636]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12694636]; go_function: protein serine/threonine phosphatase activity [goid GO:0004722] [evidence IDA] [pmid 12694636]; go_function: protein serine/threonine phosphatase activity [goid GO:0004722] [evidence ISS] [pmid 7925273]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 12694636]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence ISS] [pmid 7925273] --- --- --- --- --- --- S0003355 // PPT1 SGDID:S0003355, Chr VII from 738208-736667, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019436 // cdna:Genscan chromosome:SGD1:VII:736667:738208:-1 // ensembl // 11 // --- /// YGR123C // cdna:known chromosome:SGD1:VII:736667:738208:-1 gene:YGR123C // ensembl // 11 // --- GENEFINDER00000021635 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 2.85332955590676 -2.75929737354209 -1.14432567978828 -1.38318328113768 1.16139629376013 Max fold change below threshold 4 2.85332955590676 Max fold change at or above threshold 0.538032320200404 -1.28370498152551 -0.253505781885576 0.999178443210686 155.984031677246 67.2577936336151 0.431183839207217 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779761_at SPCC1259.10.S1 --- 2.85161141358454 --- --- --- --- 11.9783773422241 11.6165924072266 24.312915802002 12.4559030532837 0.5 0.219482004642487 0.0805663987994194 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1259.10 /GEN=pgp1 /DEF=peptidase family M22 --- --- --- --- --- --- SPCC1259.10 // |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.62647955982366 -1.03114380898589 -2.85161141358454 2.02973366987682 1.03986564268403 Max fold change below threshold 4 2.85161141358454 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777791_at YOL073C.S1 Hypothetical protein 2.85041881794365 557.815078735352 1331.75701904297 --- --- --- --- 1255.67272949219 440.522186279297 675.107971191406 1407.84130859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL073C /GEN=MDM20 /DB_XREF=GI:6324499 /SEG=NC_001147:-193831,194799 /DEF=Hypothetical ORF /NOTE=Yol073cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005434 // span:10-32,53-75,90-112,189-211 // numtm:4 S0005434 // YOL073C SGDID:S0005434, Chr XV from 194799-193831, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017407 // cdna:Genscan chromosome:SGD1:XV:193831:194799:-1 // ensembl // 11 // --- /// GENEFINDER00000022692 // cdna:GeneFinder chromosome:SGD1:XV:193831:194766:-1 // ensembl // 11 // --- /// YOL073C // cdna:known chromosome:SGD1:XV:193831:194799:-1 gene:YOL073C // ensembl // 11 // --- --- No cerevisiae_gene -1.77772138042403 -2.85041881794365 -1.16271210809856 -1.85995838158483 1.12118490393839 Max fold change below threshold 4 2.85041881794365 Max fold change at or above threshold 0.674101841945124 -1.09340547479332 -0.584748399499319 1.00405203234751 944.78604888916 461.18651701939 0.488138576518603 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771204_at YHR050W-A.S1 Identified by expression profiling and mass spectrometry 2.85017404624264 94.5567817687988 128.834899902344 --- --- --- --- 106.467529296875 79.5316772460938 109.581886291504 151.202270507813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR050W-A /GEN=SMF2 /DB_XREF=GI:33438806 /SEG=NC_001140:+209468,209638 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Yhr050w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028832 // YHR050W-A SGDID:S0028832, Chr VIII from 209468-209638, Uncharacterized ORF // sgd // 11 // --- /// YHR050W-A // cdna:known chromosome:SGD1:VIII:209468:209638:1 gene:YHR050W-A // ensembl // 11 // --- --- No cerevisiae_gene 2.85017404624264 -1.33868079969487 -1.49808838208226 1.02925170721249 1.42017262452103 Max fold change below threshold 4 2.85017404624264 Max fold change at or above threshold -0.176678685386537 -1.08691345140527 -0.0714362002050576 1.33502833699687 111.695840835571 29.5922030847004 0.264935586350645 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773055_at YDL067C.S1 Subunit VIIa of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain 2.8493664854359 5048.9326171875 1920.86682128906 COX9 6123 // mitochondrial electron transport, cytochrome c to oxygen // inferred from direct assay /// 9060 // aerobic respiration // traceable author statement 5751 // respiratory chain complex IV (sensu Eukaryota) // inferred from physical interaction 4129 // cytochrome-c oxidase activity // inferred from direct assay 1949.51538085938 5554.8837890625 4542.9814453125 1892.21826171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL067C /GEN=COX9 /DB_XREF=GI:6320136 /SEG=NC_001136:-334217,334396 /DEF=Subunit VIIa of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain /NOTE=Cox9p; go_component: respiratory chain complex IV (sensu Eukarya) [goid GO:0005751] [evidence IPI] [pmid 1331058]; go_function: cytochrome-c oxidase activity [goid GO:0004129] [evidence IDA] [pmid 1331058]; go_process: aerobic respiration [goid GO:0009060] [evidence TAS] [pmid 10385027] --- --- --- --- --- S0002225 // span:15-37 // numtm:1 S0002225 // COX9 SGDID:S0002225, Chr IV from 334396-334217, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023600 // cdna:GeneFinder chromosome:SGD1:IV:334217:334396:-1 // ensembl // 11 // --- /// YDL067C // cdna:known chromosome:SGD1:IV:334217:334396:-1 gene:YDL067C // ensembl // 11 // --- --- No cerevisiae_gene 1.02451355411219 2.8493664854359 1.2472423096936 2.33031321010142 -1.03028039645309 Max fold change below threshold 4 2.8493664854359 Max fold change at or above threshold -0.82869103159048 1.11722986311664 0.571077101133681 -0.859615932659837 3484.89971923828 1852.78261722236 0.531660238885535 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770101_at YBR028C.S1 Hypothetical protein 2.8491308923538 145.483894348145 437.978057861328 --- --- 5737 // cytoplasm // inferred from direct assay 4672 // protein kinase activity // inferred from sequence similarity 402.722625732422 149.618499755859 141.34928894043 473.233489990234 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR028C /GEN=ETR1 /DB_XREF=GI:6319502 /SEG=NC_001134:-294387,295964 /DEF=Hypothetical ORF /NOTE=Ybr028cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 9020587]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-58 /// hanks // 1.9.5 // AGC group; AGC Other; DdK2 // 1.0E-71 --- --- S0000232 // YBR028C SGDID:S0000232, Chr II from 296002-294425, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021161 // cdna:Genscan chromosome:SGD1:II:294425:296002:-1 // ensembl // 11 // --- /// GENEFINDER00000022206 // cdna:GeneFinder chromosome:SGD1:II:294425:295714:-1 // ensembl // 11 // --- /// YBR028C // cdna:known chromosome:SGD1:II:294425:296002:-1 gene:YBR028C // ensembl // 11 // --- --- No cerevisiae_gene -1.31754278609603 -2.69166330627273 1.06388773011458 -2.8491308923538 1.17508543039909 Max fold change below threshold 4 2.8491308923538 Max fold change at or above threshold 0.64778329502394 -0.829414541563174 -0.877676340060946 1.05930758660018 291.730976104736 171.340709895249 0.587324363641573 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780194_at YGR268C.S1 Cytoplasmic protein containing a zinc finger domain with sequence similarity to that of Type I J-proteins; computational analysis of large-scale protein-protein interaction data suggests a possible role in actin patch assembly 2.84912904747081 1284.46423339844 560.632995605469 HUA1 147 // actin cortical patch assembly // RCA 5737 // cytoplasm // inferred from direct assay --- 537.622192382813 1037.17346191406 1531.75500488281 583.643798828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR268C /GEN=HUA1 /DB_XREF=GI:6321708 /SEG=NC_001139:-1026062,1026658 /DEF=Cytoplasmic protein of unknown function; computational analysis of large-scale protein-protein interaction data suggests a possible role in actin patch assembly /NOTE=Hua1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: actin cortical patch assembly [goid GO:0000147] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0003500 // HUA1 SGDID:S0003500, Chr VII from 1026659-1026063, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019548 // cdna:Genscan chromosome:SGD1:VII:1026063:1026659:-1 // ensembl // 11 // --- /// YGR268C // cdna:known chromosome:SGD1:VII:1026063:1026659:-1 gene:YGR268C // ensembl // 11 // --- --- No cerevisiae_gene 1.47856126457444 1.92918647445927 1.66319384605743 2.84912904747081 1.08560213305433 Max fold change below threshold 4 2.84912904747081 Max fold change at or above threshold -0.828679991717812 0.246767465535848 1.31151596129973 -0.729603435117761 922.548614501953 464.505509926947 0.50350247415169 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769558_at YJL042W.S1 Microtubule-associated protein involved in assembly and stabilization of microtubules; overproduction results in cell cycle arrest at G2 phase; similar to Drosophila protein MAP and to mammalian MAP4 proteins 2.84804734665957 3520.90026855469 2455.37670898438 MHP1 7026 // negative regulation of microtubule depolymerization // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5874 // microtubule // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from direct assay 2482.25439453125 3874.0439453125 3167.75659179688 2428.4990234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL042W /GEN=MHP1 /DB_XREF=GI:6322419 /SEG=NC_001142:+361165,365361 /DEF=Similar to a 250 kD Drosophila microtubule-associated protein (MAP) (which can rescue MHP1 null mutant) and to mammalian MAP4 proteins /NOTE=Mhp1p; go_component: microtubule [goid GO:0005874] [evidence IDA] [pmid 8947554]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IDA] [pmid 9855114]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9090049]; go_process: microtubule stabilization [goid GO:0007026] [evidence IMP] [pmid 9855114] --- --- --- --- --- --- S0003578 // MHP1 SGDID:S0003578, Chr X from 361165-365361, Verified ORF // sgd // 11 // --- /// GENSCAN00000024108 // cdna:Genscan chromosome:SGD1:X:355940:368289:1 // ensembl // 11 // --- /// GENEFINDER00000024537 // cdna:GeneFinder chromosome:SGD1:X:361165:368289:1 // ensembl // 11 // --- /// YJL042W // cdna:known chromosome:SGD1:X:361165:365361:1 gene:YJL042W // ensembl // 11 // --- --- No cerevisiae_gene -2.84804734665957 1.56069577471493 -1.03816864823425 1.27616113754331 -1.02213522450491 Max fold change below threshold 4 2.84804734665957 Max fold change at or above threshold -0.744213828223398 1.30326906650537 0.264238938513139 -0.823294176795112 2988.13848876953 679.756375188483 0.227484896614814 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771943_at YER073W.S1 Mitochondrial aldehyde dehydrogenase, involved in regulation or biosynthesis of electron transport chain components and acetate formation; activated by K+; utilizes NADP+ as the preferred coenzyme; constitutively expressed 2.84619498630038 278.376266479492 687.793853759766 ALD5 6118 // electron transport // inferred from mutant phenotype /// 19413 // acetate biosynthesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 4028 // aldehyde dehydrogenase activity // inferred from direct assay 632.46630859375 264.347961425781 292.404571533203 743.121398925781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER073W /GEN=ALD5 /DB_XREF=GI:6320917 /SEG=NC_001137:+304027,305589 /DEF=Utilizes NADP+ as the preferred coenzyme. Activated by K+. /NOTE=Ald5p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 9473035]; go_function: aldehyde dehydrogenase activity [goid GO:0004028] [evidence IDA] [pmid 9473035]; go_process: electron transport [goid GO:0006118] [evidence IMP] [pmid 10585550] --- --- --- --- --- --- S0000875 // ALD5 SGDID:S0000875, Chr V from 304027-305589, Verified ORF // sgd // 10 // --- /// GENSCAN00000016865 // cdna:Genscan chromosome:SGD1:V:304027:305589:1 // ensembl // 10 // --- /// GENEFINDER00000019665 // cdna:GeneFinder chromosome:SGD1:V:304027:307192:1 // ensembl // 10 // --- /// YER073W // cdna:known chromosome:SGD1:V:304027:305589:1 gene:YER073W // ensembl // 10 // --- --- No cerevisiae_gene 2.84619498630038 -2.39255224508823 1.05110241636821 -2.16298365404295 1.17495807891817 Max fold change below threshold 4 2.84619498630038 Max fold change at or above threshold 0.620024942097322 -0.907894788251716 -0.791442434057374 1.07931228021177 483.085060119629 240.927805208639 0.498727501837826 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770257_at YNL313C.S1 Protein required for cell viability 2.84574987182819 184.5478515625 444.644744873047 --- 741 // karyogamy // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 408.151336669922 143.424880981445 225.670822143555 481.138153076172 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL313C /GEN=DAL82 /DB_XREF=GI:6324016 /SEG=NC_001146:-45307,48021 /DEF=Protein required for cell viability /NOTE=Ynl313cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14690591]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: karyogamy [goid GO:0000741] [evidence IPI] [pmid 14690591] --- --- --- --- --- --- S0005257 // YNL313C SGDID:S0005257, Chr XIV from 48021-45307, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019792 // cdna:Genscan chromosome:SGD1:XIV:45307:48021:-1 // ensembl // 11 // --- /// GENEFINDER00000020556 // cdna:GeneFinder chromosome:SGD1:XIV:45307:47784:-1 // ensembl // 11 // --- /// YNL313C // cdna:known chromosome:SGD1:XIV:45307:48021:-1 gene:YNL313C // ensembl // 11 // --- --- No cerevisiae_gene 1.67636877974127 -2.84574987182819 -1.36536665757055 -1.80861368250029 1.17882292632371 Max fold change below threshold 4 2.84574987182819 Max fold change at or above threshold 0.596905348954036 -1.09211792573488 -0.567367543268498 1.06258012004934 314.596298217773 156.733456344605 0.498205024129397 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778881_at YDR198C.S1 Hypothetical protein 2.84560127218994 155.001510620117 371.856918334961 --- --- --- --- 362.984283447266 127.559783935547 182.443237304688 380.729553222656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR198C /GEN=CBS2 /DB_XREF=GI:6320404 /SEG=NC_001136:-852526,853965 /DEF=Hypothetical ORF /NOTE=Ydr198cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002606 // YDR198C SGDID:S0002606, Chr IV from 853967-852528, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000025248 // cdna:Genscan chromosome:SGD1:IV:852528:853967:-1 // ensembl // 10 // --- /// YDR198C // cdna:known chromosome:SGD1:IV:852528:853967:-1 gene:YDR198C // ensembl // 10 // --- --- No cerevisiae_gene -1.09726265266795 -2.84560127218994 1.14006081416185 -1.98957379188063 1.04888715733602 Max fold change below threshold 4 2.84560127218994 Max fold change at or above threshold 0.781456767608986 -1.06650607655654 -0.63569882074409 0.920748129691645 263.429214477539 127.396771128279 0.483609122021434 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773378_at YEL066W.S1 D-Amino acid N-acetyltransferase, catalyzes N-acetylation of D-amino acids through ordered bi-bi mechanism in which acetyl-CoA is first substrate bound and CoA is last product liberated; similar to Hpa2p, acetylates histones weakly in vitro 2.84547746902057 596.09001159668 246.506523132324 HPA3 16573 // histone acetylation // non-traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4402 // histone acetyltransferase activity // inferred from sequence similarity /// 4402 // histone acetyltransferase activity // non-traceable author statement 245.904708862305 492.463714599609 699.71630859375 247.108337402344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL066W /GEN=HPA3 /DB_XREF=GI:6320768 /SEG=NC_001137:+26667,27206 /DEF=Histone acetyltransferase of the Gcn5-related N-acetyltransferase (GNAT) superfamily that is most similar to Hpa2p; acetylates histones weakly in vitro and autoacetylates /NOTE=Hpa3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: histone acetyltransferase activity [goid GO:0004402] [evidence ISS,NAS] [pmid 10600387]; go_process: histone acetylation [goid GO:0016573] [evidence NAS] [pmid 10600387] --- --- --- --- --- --- S0000792 // HPA3 SGDID:S0000792, Chr V from 26667-27206, Verified ORF // sgd // 11 // --- /// GENSCAN00000016750 // cdna:Genscan chromosome:SGD1:V:26667:27206:1 // ensembl // 11 // --- /// GENEFINDER00000019694 // cdna:GeneFinder chromosome:SGD1:V:26667:27206:1 // ensembl // 11 // --- /// YEL066W // cdna:known chromosome:SGD1:V:26667:27206:1 gene:YEL066W // ensembl // 11 // --- YEL067C // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene 1.15240843179945 2.002660774078 1.91425481789055 2.84547746902057 1.00489469496378 Max fold change below threshold 4 2.84547746902057 Max fold change at or above threshold -0.801432222302568 0.325178889212592 1.27218577134171 -0.795932438251729 421.298267364502 218.850145553519 0.519466046994617 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779147_at SPAC23D3.08.S1 --- 2.84214485323312 --- --- --- --- 5.01045417785645 14.2136554718018 11.0167369842529 11.0701236724854 0.274170011281967 0.24609400331974 0.0461426004767418 0.0107421996071935 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23D3.08 /DEF=sequence orphan --- --- --- --- --- --- SPAC23D3.08 // |||KH domain protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.84214485323312 2.83679981240395 2.45880652672844 2.19875017177905 2.20940523144777 Max fold change below threshold 4 2.84214485323312 Max fold change at or above threshold APAPPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1771835_at YIL091C.S1 Protein required for cell viability 2.84213398660266 131.142757415771 371.751846313477 --- --- 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay 3724 // RNA helicase activity // inferred from sequence similarity 345.115386962891 121.428260803223 140.85725402832 398.388305664063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL091C /GEN=RSM25 /DB_XREF=GI:6322100 /SEG=NC_001141:-191027,193192 /DEF=Protein required for cell viability /NOTE=Yil091cp; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14690591]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_function: RNA helicase activity [goid GO:0003724] [evidence ISS] [pmid 14690591]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001353 // YIL091C SGDID:S0001353, Chr IX from 193192-191027, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016409 // cdna:Genscan chromosome:SGD1:IX:191027:193192:-1 // ensembl // 11 // --- /// GENEFINDER00000019143 // cdna:GeneFinder chromosome:SGD1:IX:191027:193192:-1 // ensembl // 11 // --- /// YIL091C // cdna:known chromosome:SGD1:IX:191027:193192:-1 gene:YIL091C // ensembl // 11 // --- --- No cerevisiae_gene 1.56281198764743 -2.84213398660266 -1.15205262909647 -2.45010730433168 1.15436262975693 Max fold change below threshold 4 2.84213398660266 Max fold change at or above threshold 0.665107798584258 -0.923224576264827 -0.78526536743616 1.04338214511673 251.447301864624 140.831434088801 0.560083297949337 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769383_at YIR021W.S1 Protein required for the splicing of two mitochondrial group I introns (BI3 in COB and AI5beta in COX1); forms a splicing complex, containing four subunits of Mrs1p and two subunits of the BI3-encoded maturase, that binds to the BI3 RNA 2.84172347231957 200.10814666748 553.588562011719 MRS1 372 // Group I intron splicing // inferred from direct assay 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 3723 // RNA binding // inferred from direct assay /// 4520 // endodeoxyribonuclease activity // inferred from direct assay /// 4520 // endodeoxyribonuclease activity // inferred from sequence similarity 523.788269042969 184.32063293457 215.895660400391 583.388854980469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR021W /GEN=MRS1 /DB_XREF=GI:6322212 /SEG=NC_001141:+397291,398382 /DEF=Protein required for the splicing of two mitochondrial group I introns (BI3 in COB and AI5beta in COX1); forms a splicing complex, containing four subunits of Mrs1p and two subunits of the BI3-encoded maturase, that binds to the BI3 RNA /NOTE=Mrs1p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 11773622]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 11773622]; go_function: endodeoxyribonuclease activity [goid GO:0004520] [evidence IDA,ISS] [pmid 11773622]; go_process: Group I intron splicing [goid GO:0000372] [evidence IDA] [pmid 11773622] --- --- --- --- --- --- S0001460 // MRS1 SGDID:S0001460, Chr IX from 397291-398382, Verified ORF // sgd // 11 // --- /// GENSCAN00000016491 // cdna:Genscan chromosome:SGD1:IX:397291:398382:1 // ensembl // 11 // --- /// GENEFINDER00000019129 // cdna:GeneFinder chromosome:SGD1:IX:397291:398382:1 // ensembl // 11 // --- /// YIR021W // cdna:known chromosome:SGD1:IX:397291:398382:1 gene:YIR021W // ensembl // 11 // --- YIR020C-B // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene -1.50627389823488 -2.84172347231957 -1.06951477717432 -2.42611763511862 1.11378755397939 Max fold change below threshold 4 2.84172347231957 Max fold change at or above threshold 0.713538773144499 -0.934912711804512 -0.781584690582728 1.00295862924274 376.8483543396 205.931226492176 0.546456483412422 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777809_at SPAC6C3.02c.S1 --- 2.84159151976941 --- --- --- --- 4.4048318862915 1.63989961147308 7.78156852722168 8.65756702423096 0.334473013877869 0.466064006090164 0.0952147990465164 0.06494140625 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6C3.02c /DEF=CHCH domain --- --- --- --- --- --- SPAC6C3.02c // |||CHCH domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.17279430311027 -2.68603752051307 -2.84159151976941 1.76659830116084 1.96547047599583 Max fold change below threshold 3 2.84159151976941 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1770632_at YAL044C.S1 H subunit of the mitochondrial glycine decarboxylase complex, required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of levels of 5,10-methylene-THF in the cytoplasm 2.84071846678259 1260.93975830078 2920.10620117188 GCV3 6546 // glycine catabolism // inferred from curator /// 6730 // one-carbon compound metabolism // inferred from genetic interaction /// 6730 // one-carbon compound metabolism // inferred from mutant phenotype 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay /// 5960 // glycine cleavage complex // traceable author statement 4375 // glycine dehydrogenase (decarboxylating) activity // inferred from mutant phenotype /// 4375 // glycine dehydrogenase (decarboxylating) activity // inferred from sequence similarity 3033.91333007813 1068.00915527344 1453.87036132813 2806.29907226563 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL044C /GEN=GCV3 /DB_XREF=GI:37362609 /SEG=NC_001133:-57953,58465 /DEF=H subunit of the mitochondrial glycine decarboxylase complex, required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of levels of 5,10-methylene-THF in the cytoplasm /NOTE=Gcv3p; go_component: mitochondrion [goid GO:0005739] [evidence TAS]; go_function: glycine dehydrogenase (decarboxylating) activity [goid GO:0004375] [evidence IMP,ISS] [pmid 9020168]; go_process: one-carbon compound metabolism [goid GO:0006730] [evidence IGI,IMP] [pmid 10871621] --- --- --- --- --- --- S0000042 // GCV3 SGDID:S0000042, Chr I from 58463-57951, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018181 // cdna:GeneFinder chromosome:SGD1:I:57951:58430:-1 // ensembl // 10 // --- /// GENSCAN00000020338 // cdna:Genscan chromosome:SGD1:I:57951:58430:-1 // ensembl // 10 // --- /// YAL044C // cdna:known chromosome:SGD1:I:57951:58463:-1 gene:YAL044C // ensembl // 11 // --- --- No cerevisiae_gene -1.8691848327032 -2.84071846678259 1.0213765144655 -2.08678394633935 -1.08110833947172 Max fold change below threshold 4 2.84071846678259 Max fold change at or above threshold 0.967358230382353 -1.04849192427667 -0.652827485556235 0.733961179450554 2090.52297973633 975.223366806852 0.466497319694546 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780128_at YJL180C.S1 Molecular chaperone, required for the assembly of alpha and beta subunits into the F1 sector of mitochondrial F1F0 ATP synthase 2.8406245021652 404.021072387695 1198.45172119141 ATP12 6461 // protein complex assembly // inferred from mutant phenotype /// 6461 // protein complex assembly // inferred from physical interaction 5759 // mitochondrial matrix // traceable author statement 51082 // unfolded protein binding // inferred from physical interaction 1143.82971191406 402.668395996094 405.373748779297 1253.07373046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL180C /GEN=ATP12 /DB_XREF=GI:6322281 /SEG=NC_001142:-87581,88558 /DEF=Molecular chaperone, required for the assembly of alpha and beta subunits into the F1 sector of mitochondrial F1F0 ATP synthase /NOTE=Atp12p; go_component: mitochondrial matrix [goid GO:0005759] [evidence TAS] [pmid 10747017]; go_function: chaperone activity [goid GO:0003754] [evidence IPI] [pmid 10747017]; go_process: protein complex assembly [goid GO:0006461] [evidence IPI] [pmid 10747017]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP] [pmid 2142305] --- --- --- --- --- --- S0003716 // ATP12 SGDID:S0003716, Chr X from 88558-87581, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024002 // cdna:Genscan chromosome:SGD1:X:87581:88558:-1 // ensembl // 11 // --- /// GENEFINDER00000024403 // cdna:GeneFinder chromosome:SGD1:X:87581:87985:-1 // ensembl // 9 // --- /// YJL180C // cdna:known chromosome:SGD1:X:87581:88558:-1 gene:YJL180C // ensembl // 11 // --- --- No cerevisiae_gene -1.09868015376417 -2.8406245021652 1.22982527793006 -2.8216669563791 1.0955072397725 Max fold change below threshold 4 2.8406245021652 Max fold change at or above threshold 0.743427856774236 -0.864892983977175 -0.859022365571489 0.980487492774429 801.236396789551 460.82926810281 0.57514769667141 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776508_at YOL075C.S1 Hypothetical protein 2.84043642710558 210.376022338867 107.565532684326 --- 6810 // transport // inferred from sequence similarity 16020 // membrane // inferred from sequence similarity 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from sequence similarity 92.0386276245117 159.322174072266 261.429870605469 123.092437744141 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL075C /GEN=MDM20 /DB_XREF=GI:6324498 /SEG=NC_001147:-189657,193541 /DEF=Hypothetical ORF /NOTE=Yol075cp; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 9020838]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence ISS] [pmid 9020838]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 9020838] --- --- --- --- --- S0005435 // span:375-397,404-426,463-485,492-514,524-543,550-572,603-625,1037-1059,1112-1134,1146-1168,1178-1200,1207-1226,1266-1285 // numtm:13 S0005435 // YOL075C SGDID:S0005435, Chr XV from 193541-189657, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017406 // cdna:Genscan chromosome:SGD1:XV:189657:193541:-1 // ensembl // 11 // --- /// GENEFINDER00000022811 // cdna:GeneFinder chromosome:SGD1:XV:189657:192731:-1 // ensembl // 11 // --- /// YOL075C // cdna:known chromosome:SGD1:XV:189657:193541:-1 gene:YOL075C // ensembl // 11 // --- --- No cerevisiae_gene 1.88030375788099 1.73103595940445 1.79022134775214 2.84043642710558 1.33739975183375 Max fold change below threshold 4 2.84043642710558 Max fold change at or above threshold -0.909004995489106 0.00477231389675407 1.39149612873236 -0.487263447140012 158.970777511597 73.6323234957262 0.463181501960981 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770543_at YCR023C.S1 Hypothetical protein 2.84007463387512 531.004837036133 1342.98217773438 --- --- --- --- 1318.63110351563 464.294525146484 597.715148925781 1367.33325195313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR023C /GEN=HSP30 /DB_XREF=GI:10383787 /SEG=NC_001135:-158533,160368 /DEF=Hypothetical ORF /NOTE=Ycr023cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000617 // span:21-43,90-112,147-169,198-220,358-380,412-434,441-463,478-500,512-534,544-563 // numtm:10 S0000617 // YCR023C SGDID:S0000617, Chr III from 160368-158533, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022475 // cdna:Genscan chromosome:SGD1:III:158533:159837:-1 // ensembl // 11 // --- /// YCR023C // cdna:known chromosome:SGD1:III:158533:160368:-1 gene:YCR023C // ensembl // 11 // --- --- No cerevisiae_gene -1.43539320971696 -2.84007463387512 1.02909289252049 -2.20611959707811 1.0369338690007 Max fold change below threshold 4 2.84007463387512 Max fold change at or above threshold 0.807924864761413 -1.00070135953705 -0.718250572412695 0.911027067188335 936.993507385254 472.36768265954 0.504131222827483 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776154_at YBR070C.S1 Essential protein required for the second step of dolichyl-linked oligosaccharide synthesis; involved in N-linked glycosylation; similar to bacterial glycosyltransferases 2.83971819636248 335.464172363281 130.455635070801 ALG14 6488 // dolichol-linked oligosaccharide biosynthesis // inferred from direct assay /// 6488 // dolichol-linked oligosaccharide biosynthesis // inferred from mutant phenotype 42175 // nuclear envelope-endoplasmic reticulum network // inferred from direct assay 16757 // transferase activity, transferring glycosyl groups // inferred from mutant phenotype /// 16757 // transferase activity, transferring glycosyl groups // inferred from sequence similarity 120.468154907227 328.832733154297 342.095611572266 140.443115234375 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR070C /GEN=TAT1 /DB_XREF=GI:6319544 /SEG=NC_001134:-379181,379894 /DEF=Protein required for cell viability /NOTE=Ybr070cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000274 // span:5-24 // numtm:1 S0000274 // YBR070C SGDID:S0000274, Chr II from 379931-379218, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YBR070C // cdna:known chromosome:SGD1:II:379218:379931:-1 gene:YBR070C // ensembl // 11 // --- --- No cerevisiae_gene 2.76679964955039 2.72962372012366 -1.31253771779063 2.83971819636248 1.16581112529308 Max fold change below threshold 4 2.83971819636248 Max fold change at or above threshold -0.947172845162035 0.807242678619443 0.918915209441451 -0.778985042898859 232.959903717041 118.76580856852 0.509812232377876 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775923_at SPAC1952.15c.S1 --- 2.83880786252047 --- --- --- --- 1.42123484611511 4.03461265563965 2.75050401687622 1.70723223686218 0.753906011581421 0.432372987270355 0.366210997104645 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1952.15c /DEF=sequence orphan --- --- --- --- --- --- SPAC1952.15c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.19440529064107 2.83880786252047 1.24550874999224 1.93529171086299 1.20123162018496 Max fold change below threshold 2 2.83880786252047 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770008_at YIL019W.S1 Protein required for pre-rRNA processing and 40S ribosomal subunit assembly 2.83781788968793 71.8670921325684 139.94800567627 FAF1 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 142.621566772461 50.2574768066406 93.4767074584961 137.274444580078 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL019W /GEN=HIS6 /DB_XREF=GI:6322170 /SEG=NC_001141:+315091,316131 /DEF=Protein required for pre-rRNA processing and 40S ribosomal subunit assembly /NOTE=Yil019wp --- --- --- --- --- --- S0001281 // FAF1 SGDID:S0001281, Chr IX from 315091-316131, Verified ORF // sgd // 11 // --- /// GENSCAN00000016461 // cdna:Genscan chromosome:SGD1:IX:315091:316131:1 // ensembl // 11 // --- /// GENEFINDER00000019042 // cdna:GeneFinder chromosome:SGD1:IX:315091:317930:1 // ensembl // 10 // --- /// YIL019W // cdna:known chromosome:SGD1:IX:315091:316131:1 gene:YIL019W // ensembl // 11 // --- --- No cerevisiae_gene 1.86762616313287 -2.83781788968793 -1.07255942549256 -1.52574444105004 -1.03895205847483 Max fold change below threshold 4 2.83781788968793 Max fold change at or above threshold 0.851037524263631 -1.28997866028744 -0.288149136024161 0.727090272047967 105.907548904419 43.1403044181973 0.4073392771759 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771757_at YER024W.S1 Carnitine acetyltransferase; has similarity to Yat1p, which is a carnitine acetyltransferase associated with the mitochondrial outer membrane 2.8374180187219 2663.06896972656 1028.62438964844 YAT2 6066 // alcohol metabolism // inferred from genetic interaction /// 6066 // alcohol metabolism // inferred from mutant phenotype /// 9437 // carnitine metabolism // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4092 // carnitine O-acetyltransferase activity // inferred from mutant phenotype 1028.67724609375 2918.78735351563 2407.3505859375 1028.57153320313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER024W /GEN=YAT2 /DB_XREF=GI:6320862 /SEG=NC_001137:+202191,204962 /DEF=The Yat2p protein shows significant homology with the known carnitine acetyltransferase associated with the outer-mitochondrial membrane, Yat1p, and also functions as a carnitine acetyltransferase. /NOTE=Yat2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: carnitine O-acetyltransferase activity [goid GO:0004092] [evidence IMP] [pmid 11329169]; go_process: alcohol metabolism [goid GO:0006066] [evidence IGI,IMP] [pmid 11329169]; go_process: carnitine metabolism [goid GO:0009437] [evidence IMP] [pmid 11329169] --- --- --- --- --- --- S0000826 // YAT2 SGDID:S0000826, Chr V from 202191-204962, Verified ORF // sgd // 10 // --- /// GENSCAN00000016826 // cdna:Genscan chromosome:SGD1:V:202191:204962:1 // ensembl // 10 // --- /// GENEFINDER00000019768 // cdna:GeneFinder chromosome:SGD1:V:202191:204962:1 // ensembl // 10 // --- /// YER024W // cdna:known chromosome:SGD1:V:202191:204962:1 gene:YER024W // ensembl // 10 // --- --- No cerevisiae_gene 1.1977127122542 2.8374180187219 1.13395243626263 2.34023897687935 -1.00010277641099 Max fold change below threshold 4 2.8374180187219 Max fold change at or above threshold -0.845519695594522 1.11016447095492 0.580984300648303 -0.845629076008702 1845.8466796875 966.470015839386 0.52359170806267 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771622_at SPBC83.17.S1 --- 2.83719274550314 --- --- --- --- 4.9991512298584 14.1835556030273 9.54867458343506 9.3369255065918 0.432372987270355 0.0561522990465164 0.24609400331974 0.0952147990465164 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC83.17 /DEF=transcription factor --- --- --- --- --- --- SPBC83.17 // |||multiprotein bridging factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.56409275398038 2.83719274550314 -1.24085556704805 1.91005915692323 1.86770215128224 Max fold change below threshold 4 2.83719274550314 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1771588_at YMR179W.S1 Protein required for normal transcription at several loci including HTA2-HTB2 and HHF2-HHT2, but not required at the other histone loci; functionally related to Spt10p 2.83612585634271 58.1833667755127 127.273918151855 SPT21 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 143.62077331543 65.7269592285156 50.6397743225098 110.927062988281 0.00122069998178631 0.0676269978284836 0.0375977009534836 0.000244141003349796 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR179W /GEN=SPT21 /DB_XREF=GI:6323833 /SEG=NC_001145:+619857,622133 /DEF=Protein required for normal transcription at several loci including HTA2-HTB2 and HHF2-HHT2, but not required at the other histone loci; functionally related to Spt10p /NOTE=Spt21p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP] [pmid 8035801] --- --- --- --- --- --- S0004791 // SPT21 SGDID:S0004791, Chr XIII from 619857-622133, Verified ORF // sgd // 11 // --- /// GENSCAN00000018864 // cdna:Genscan chromosome:SGD1:XIII:619857:622133:1 // ensembl // 11 // --- /// GENEFINDER00000022010 // cdna:GeneFinder chromosome:SGD1:XIII:619857:622133:1 // ensembl // 11 // --- /// YMR179W // cdna:known chromosome:SGD1:XIII:619857:622133:1 gene:YMR179W // ensembl // 11 // --- --- No cerevisiae_gene -1.40611243006286 -2.18511209100816 -1.64733153315195 -2.83612585634271 -1.29473159611737 Max fold change below threshold 4 2.83612585634271 Max fold change at or above threshold 1.19712998730953 -0.635157620002552 -0.990051808412111 0.428079441105132 92.7286424636841 42.5117835082573 0.458453638258605 PPAPPP Called_P_>2EXP 2 0 PAPP 1 3 0 Yes Yes 2 < x = 3
1778948_at SPAC11E3.11c.S1 --- 2.83609398897246 --- --- --- --- 1.62294840812683 4.60283422470093 2.14353823661804 3.50462341308594 0.5 0.432372987270355 0.432372987270355 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11E3.11c /DEF=Sec7 domain --- --- --- --- --- --- SPAC11E3.11c // |||guanyl-nucleotide exchange factor activity |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.42697086103281 2.83609398897246 2.40932761913632 1.32076794671006 2.1594176349271 Max fold change below threshold 2 2.83609398897246 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774725_at YNL221C.S1 Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends; binds to the RPR1 RNA subunit in Rnase P 2.83601319118065 358.841232299805 964.26416015625 POP1 6364 // rRNA processing // traceable author statement /// 8033 // tRNA processing // traceable author statement 172 // ribonuclease MRP complex // inferred from direct assay /// 5655 // nucleolar ribonuclease P complex // inferred from direct assay 171 // ribonuclease MRP activity // inferred from direct assay /// 4526 // ribonuclease P activity // inferred from direct assay 952.851013183594 335.982574462891 381.699890136719 975.677307128906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL221C /GEN=POP1 /DB_XREF=GI:6324108 /SEG=NC_001146:-231067,233694 /DEF=Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends; binds to the RPR1 RNA subunit in Rnase P /NOTE=Pop1p; go_component: nucleolar ribonuclease P complex [goid GO:0005655] [evidence IDA] [pmid 9620854]; go_component: ribonuclease MRP complex [goid GO:0000172] [evidence IDA] [pmid 9620854]; go_function: ribonuclease MRP activity [goid GO:0000171] [evidence IDA] [pmid 9620854]; go_function: ribonuclease P activity [goid GO:0004526] [evidence IDA] [pmid 9620854]; go_process: rRNA processing [goid GO:0006364] [evidence TAS] [pmid 9620854]; go_process: tRNA processing [goid GO:0008033] [evidence TAS] [pmid 9620854] --- --- --- --- --- --- S0005165 // POP1 SGDID:S0005165, Chr XIV from 233694-231067, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019863 // cdna:Genscan chromosome:SGD1:XIV:231067:233694:-1 // ensembl // 11 // --- /// GENEFINDER00000020532 // cdna:GeneFinder chromosome:SGD1:XIV:231067:233187:-1 // ensembl // 11 // --- /// YNL221C // cdna:known chromosome:SGD1:XIV:231067:233694:-1 gene:YNL221C // ensembl // 11 // --- --- No cerevisiae_gene -1.18882021660782 -2.83601319118065 -1.21283986430871 -2.4963355709699 1.02395578493331 Max fold change below threshold 4 2.83601319118065 Max fold change at or above threshold 0.8318933698771 -0.92976721787174 -0.799207137075127 0.897080985069768 661.552696228027 350.163046735907 0.529304844092437 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776330_at YCL042W.S1 Hypothetical protein /// Glucokinase, catalyzes the phosphorylation of glucose at C6 in the first irreversible step of glucose metabolism; one of three glucose phosphorylating enzymes; expression regulated by non-fermentable carbon sources 2.83564150413067 14.575615644455 14.5875606536865 GLK1 5975 // carbohydrate metabolism // inferred from mutant phenotype /// 6006 // glucose metabolism // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5829 // cytosol // traceable author statement 4340 // glucokinase activity // inferred from mutant phenotype /// 4340 // glucokinase activity // inferred from direct assay 15.1197385787964 5.33203458786011 23.8191967010498 14.0553827285767 0.149657994508743 0.334473013877869 0.043701171875 0.0676269978284836 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL042W /GEN=PDI1 /DB_XREF=GI:10383759 /SEG=NC_001135:+50584,50943 /DEF=Hypothetical ORF /NOTE=Ycl042wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000547 // YCL042W SGDID:S0000547, Chr III from 50584-50943, Uncharacterized ORF // sgd // 11 // --- /// YCL042W // cdna:known chromosome:SGD1:III:50584:50943:1 gene:YCL042W // ensembl // 11 // --- YCL041C // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene 2.40255831343061 -2.83564150413067 2.14242274678721 1.57537093494813 -1.0757258532744 Max fold change below threshold 4 2.83564150413067 Max fold change at or above threshold 0.0711852995471643 -1.22350964444643 1.22192958613322 -0.0696052412339595 14.5815881490707 7.5598534128397 0.518451991343719 APAPPA No 4 0 AAPA 3 1 0 No No x = 1
1774883_at YDL153C.S1 Component of the small (ribosomal) subunit (SSU) processosome required for pre-18S rRNa processing; essential nucleolar protein that, when overproduced, disrupts silencing 2.83540087155288 414.286575317383 369.171676635742 SAS10 6325 // establishment and/or maintenance of chromatin architecture // inferred from genetic interaction /// 6325 // establishment and/or maintenance of chromatin architecture // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction 30515 // snoRNA binding // inferred from physical interaction 326.068328857422 296.894073486328 531.679077148438 412.275024414063 0.000244141003349796 0.000244140625 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL153C /GEN=SAS10 /DB_XREF=GI:6320049 /SEG=NC_001136:-181187,183019 /DEF=part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA); Something About Silencing 10 /NOTE=Sas10p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9611201]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: snoRNA binding [goid GO:0030515] [evidence IPI] [pmid 12068309]; go_process: establishment and/or maintenance of chromatin architecture [goid GO:0006325] [evidence IGI,IMP] [pmid 9611201]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IPI] [pmid 12068309]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP] [pmid 12837249] --- --- --- --- scop // a.4.1.DNA-binding domain of rap1 // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; DNA-binding domain of rap1 // 2.0 --- S0002312 // SAS10 SGDID:S0002312, Chr IV from 183019-181187, reverse complement, Verified ORF // sgd // 11 // --- /// U63063 // Saccharomyces cerevisiae something about silencing 10 (SAS10) mRNA, complete cds. // gb // 11 // --- /// GENEFINDER00000023495 // cdna:GeneFinder chromosome:SGD1:IV:181187:183019:-1 // ensembl // 11 // --- /// GENSCAN00000024986 // cdna:Genscan chromosome:SGD1:IV:181187:183019:-1 // ensembl // 11 // --- /// YDL153C // cdna:known chromosome:SGD1:IV:181187:183019:-1 gene:YDL153C // ensembl // 11 // --- --- No cerevisiae_gene 2.83540087155288 -1.09826486271184 1.12055548697299 1.6305756496238 1.26438230250303 Max fold change below threshold 4 2.83540087155288 Max fold change at or above threshold -0.623101686041347 -0.899956803680943 1.32808394601684 0.194974543705449 391.729125976563 105.377338225953 0.269005624647522 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773646_at YDL240W.S1 Putative GTPase-activating protein (GAP) involved in the Pkc1p-mediated signaling pathway that controls cell wall integrity; appears to specifically regulate 1,3-beta-glucan synthesis 2.834551761676 62.8847885131836 122.120067596436 LRG1 7264 // small GTPase mediated signal transduction // inferred from curator /// 7264 // small GTPase mediated signal transduction // inferred from physical interaction /// 9272 // cell wall biosynthesis (sensu Fungi) // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 5100 // Rho GTPase activator activity // inferred from direct assay 110.413719177246 49.6018676757813 76.1677093505859 133.826416015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL240W /GEN=LRG1 /DB_XREF=GI:6319961 /SEG=NC_001136:+22823,25876 /DEF=Expressed most highly in sporulating cells; may also play a role during mating /NOTE=Lrg1p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 14562095]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: Rho GTPase activator activity [goid GO:0005100] [evidence IDA] [pmid 11591390]; go_process: cell wall biosynthesis (sensu Fungi) [goid GO:0009272] [evidence IGI] [pmid 11447600]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence IC,IPI] [pmid 11591390] --- --- --- --- --- --- S0002399 // LRG1 SGDID:S0002399, Chr IV from 22823-25876, Verified ORF // sgd // 10 // --- /// GENSCAN00000024922 // cdna:Genscan chromosome:SGD1:IV:22823:25876:1 // ensembl // 10 // --- /// GENEFINDER00000023496 // cdna:GeneFinder chromosome:SGD1:IV:23759:25876:1 // ensembl // 10 // --- /// YDL240W // cdna:known chromosome:SGD1:IV:22823:25876:1 gene:YDL240W // ensembl // 10 // --- --- No cerevisiae_gene -2.834551761676 -2.22599922847577 1.22943955724054 -1.44961323005044 1.21204517892197 Max fold change below threshold 4 2.834551761676 Max fold change at or above threshold 0.482402405668569 -1.1554350487581 -0.439940791815176 1.11297343490471 92.5024280548096 37.1293569683032 0.401387917583129 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774185_at SPCC1739.08c.S1 --- 2.83444013805047 --- --- --- --- 8.44729423522949 4.99090385437012 3.18067455291748 3.00342512130737 0.466064006090164 0.753906011581421 0.665526986122131 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1739.08c /DEF=short chain dehydrogenase --- --- --- --- --- --- SPCC1739.08c // |||short chain dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.66091442938718 -1.6925379614021 2.83444013805047 -2.65581847331133 -2.81255363261809 Max fold change below threshold 4 2.83444013805047 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776383_at SPAC27E2.10c.S1 --- 2.83371921059426 --- --- --- --- 1.75683677196503 1.56535828113556 1.27588558197021 4.9783821105957 0.725830018520355 0.805419981479645 0.753906011581421 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27E2.10c /GEN=rfc3 /DEF=AAA family ATPase --- --- --- --- --- --- AB017040 // Schizosaccharomyces pombe mRNA for Rfc3, complete cds. // gb // 11 // --- /// SPAC27E2.10c // |rfc3|SPAPJ698.01c|DNA replication factor C complex subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.5599369596146 -1.12232246964609 -1.05657314163037 -1.37695479656736 2.83371921059426 Max fold change below threshold 1 2.83371921059426 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774088_at SPAC29A4.13.S1 --- 2.83185205083296 --- --- --- --- 1.48709571361542 0.972225248813629 0.900184154510498 4.21123504638672 0.5 0.828612983226776 0.665526986122131 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29A4.13 /DEF=urease accessory protein --- --- --- --- --- --- SPAC29A4.13 // |||urease accessory protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.91145283073509 -1.52957940089508 -2.11384269704808 -1.65199054678325 2.83185205083296 Max fold change below threshold 1 2.83185205083296 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775973_at YCR032W.S1 Protein homologous to human Chediak-Higashi syndrome protein and murine beige gene, which are implicated in disease syndromes due to defective lysosomal trafficking 2.83137192986792 211.449401855469 487.693756103516 BPH1 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 9268 // response to pH // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay --- 468.471862792969 165.457550048828 257.441253662109 506.915649414063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR032W /GEN=BPH1 /DB_XREF=GI:10383794 /SEG=NC_001135:+179515,186018 /DEF=Protein homologous to human Chediak-Higashi syndrome protein and murine beige gene, which are implicated in disease syndromes due to defective lysosomal trafficking /NOTE=Bph1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to pH [goid GO:0009268] [evidence IMP] [pmid 9509574] --- --- --- --- --- --- S0000628 // BPH1 SGDID:S0000628, Chr III from 179515-186018, Verified ORF // sgd // 11 // --- /// GENSCAN00000022482 // cdna:Genscan chromosome:SGD1:III:179515:186018:1 // ensembl // 11 // --- /// GENEFINDER00000023406 // cdna:GeneFinder chromosome:SGD1:III:181933:186018:1 // ensembl // 11 // --- /// YCR032W // cdna:known chromosome:SGD1:III:179515:186018:1 gene:YCR032W // ensembl // 11 // --- --- No cerevisiae_gene -2.25614878964236 -2.83137192986792 1.28949312762794 -1.81972335874279 1.08206210377694 Max fold change below threshold 4 2.83137192986792 Max fold change at or above threshold 0.722354836952013 -1.11854787123489 -0.559719321001578 0.955912355284451 349.571578979492 164.600938113986 0.470864761358766 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774418_at SPCC1259.14c.S1 --- 2.83085327486143 --- --- --- --- 0.782215416431427 0.843224167823792 1.79847681522369 0.276317894458771 0.884033203125 0.953857004642487 0.888427972793579 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1259.14c /GEN=meu27 /DEF=possibly S. pombe specific --- --- --- --- --- --- AB054311 // Schizosaccharomyces pombe mRNA for Meu27, partial cds. // gb // 11 // --- /// SPCC1259.14c // |meu27|B8647-6|meiotic expression upregulated|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.71627546832239 1.07799482100557 -2.10263742193656 2.29920911483513 -2.83085327486143 Max fold change below threshold 0 2.83085327486143 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775416_at YJL117W.S1 Endoplasmic reticulum (ER) resident protein required for ER exit of the high-affinity phosphate transporter Pho84p, specifically required for packaging of Pho84p into COPII vesicles 2.82910003444089 700.052886962891 1835.14001464844 PHO86 6457 // protein folding // inferred from mutant phenotype /// 6817 // phosphate transport // inferred from mutant phenotype /// 45045 // secretory pathway // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay --- 1791.37719726563 633.196838378906 766.908935546875 1878.90283203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL117W /GEN=PHO86 /DB_XREF=GI:6322344 /SEG=NC_001142:+192451,193386 /DEF=Protein specifically required for packaging of the high-affinity phosphate transporter Pho84p into COPII coated vesicles for transport to the plasma membrane; transcription and localization are regulated by phosphate levels /NOTE=Pho86p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 10655492]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: phosphate transport [goid GO:0006817] [evidence IMP] [pmid 10655492]; go_process: secretory pathway [goid GO:0045045] [evidence IMP] [pmid 10655492] --- --- --- --- --- S0003653 // span:71-90,118-140 // numtm:2 S0003653 // PHO86 SGDID:S0003653, Chr X from 192451-193386, Verified ORF // sgd // 11 // --- /// GENSCAN00000024046 // cdna:Genscan chromosome:SGD1:X:192451:193386:1 // ensembl // 11 // --- /// GENEFINDER00000024370 // cdna:GeneFinder chromosome:SGD1:X:192451:193386:1 // ensembl // 11 // --- /// YJL117W // cdna:known chromosome:SGD1:X:192451:193386:1 gene:YJL117W // ensembl // 11 // --- --- No cerevisiae_gene -1.28370540183757 -2.82910003444089 -1.26180202820907 -2.33584082051178 1.04885941101585 Max fold change below threshold 4 2.82910003444089 Max fold change at or above threshold 0.795315345500984 -0.96328043814693 -0.760250289605696 0.928215382251642 1267.59645080566 658.582472251961 0.51955215860172 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776767_at YLL062C.S1 S-methylmethionine-homocysteine methyltransferase, functions along with Sam4p in the conversion of S-adenosylmethionine (AdoMet) to methionine to control the methionine/AdoMet ratio 2.82888336206458 625.701446533203 243.691390991211 MHT1 96 // sulfur amino acid metabolism // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 8898 // homocysteine S-methyltransferase activity // inferred from direct assay 252.275131225586 537.745971679688 713.656921386719 235.107650756836 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL062C /GEN=MHT1 /DB_XREF=GI:6322966 /SEG=NC_001144:-16639,17613 /DEF=S-Methylmethionine Homocysteine methylTransferase /NOTE=Mht1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: homocysteine S-methyltransferase activity [goid GO:0008898] [evidence IDA] [pmid 11013242]; go_process: sulfur amino acid metabolism [goid GO:0000096] [evidence IMP] [pmid 11013242] --- --- --- --- --- --- S0003985 // MHT1 SGDID:S0003985, Chr XII from 17613-16639, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017646 // cdna:Genscan chromosome:SGD1:XII:16639:17613:-1 // ensembl // 11 // --- /// GENEFINDER00000024643 // cdna:GeneFinder chromosome:SGD1:XII:16639:17613:-1 // ensembl // 11 // --- /// YLL062C // cdna:known chromosome:SGD1:XII:16639:17613:-1 gene:YLL062C // ensembl // 11 // --- --- No cerevisiae_gene 1.23175534562387 2.13158534123933 1.76546278094318 2.82888336206458 -1.07301965892427 Max fold change below threshold 4 2.82888336206458 Max fold change at or above threshold -0.786105463859606 0.444069975004746 1.20212053250708 -0.860085043652223 434.696418762207 232.057015150324 0.533836961001666 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776313_at SPBC4F6.13c.S1 --- 2.82883489408675 --- --- --- --- 7.23290300369263 2.55684876441956 5.05402231216431 5.61129140853882 0.0561522990465164 0.149657994508743 0.149657994508743 0.0952147990465164 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4F6.13c /DEF=WD repeat protein --- --- --- --- --- --- SPBC4F6.13c // |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.43161751622458 -2.82883489408675 1.63618953150071 -1.43111813857332 -1.28899080035055 Max fold change below threshold 4 2.82883489408675 Max fold change at or above threshold MAAPAA No 4 0 MAAA 3 0 1 No No x = 1
1771485_at SPAPB1A11.04c.S1 --- 2.82846414744974 --- --- --- --- 5.31781911849976 15.0412607192993 9.08338165283203 5.3922643661499 0.533936023712158 0.030273400247097 0.0676269978284836 0.111571997404099 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1A11.04c /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPAPB1A11.04c // |||transcription factor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.34147167282012 2.82846414744974 1.0680157187659 1.70810278620282 1.01399920643994 Max fold change below threshold 4 2.82846414744974 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1779385_at SPBC36B7.02.S1 --- 2.8271034678378 --- --- --- --- 1.82944285869598 3.57906556129456 5.17202425003052 3.24320983886719 0.753906011581421 0.567627012729645 0.5 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC36B7.02 /DEF=hypothetical protein --- --- --- --- --- --- SPBC36B7.02 // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.74710778935025 1.95636914500062 2.59218808431563 2.8271034678378 1.77278553601774 Max fold change below threshold 3 2.8271034678378 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779036_at SPCC1322.15.S1 --- 2.82703784596599 --- --- --- --- 12.0120334625244 33.9584732055664 18.2011775970459 9.94171810150146 0.274170011281967 0.111571997404099 0.129638999700546 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1322.15 /GEN=rpl3402 /DEF=60S ribosomal protein L34 --- --- --- --- --- --- SPCC1322.15 // |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.37107232066786 2.82703784596599 1.13868634348852 1.51524532909691 -1.20824522883125 Max fold change below threshold 4 2.82703784596599 Max fold change at or above threshold AAAPAP No 4 0 AAAP 3 1 0 No No x = 1
1773542_at SPAC22E12.10c.S1 --- 2.82664752014387 --- --- --- --- 2.74452972412109 2.13756108283997 0.970948696136475 1.95356512069702 0.398925989866257 0.466064006090164 0.780517995357513 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22E12.10c /GEN=etp1 /DEF=electron carrier activity (PMID 11841224) --- --- --- --- --- --- SPAC22E12.10c // |etp1|cox15|ferredoxin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.89318007761355 -1.28395382295916 1.1904801782443 -2.82664752014387 -1.40488263997151 Max fold change below threshold 1 2.82664752014387 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770442_at YIL159W.S1 Formin, nucleates the formation of linear actin filaments, involved in cell processes such as budding and mitotic spindle orientation which require the formation of polarized actin cables, functionally redundant with BNI1 2.82651890933654 30.5681209564209 82.6058006286621 BNR1 6970 // response to osmotic stress // inferred from genetic interaction /// 7015 // actin filament organization // traceable author statement /// 7120 // axial bud site selection // inferred from mutant phenotype 142 // contractile ring (sensu Saccharomyces) // inferred from direct assay 8092 // cytoskeletal protein binding // traceable author statement 69.5326843261719 36.5361289978027 24.6001129150391 95.6789169311523 0.000732421991415322 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL159W /GEN=BNR1 /DB_XREF=GI:6322032 /SEG=NC_001141:+41825,45952 /DEF=Formin, nucleates the formation of linear actin filaments, involved in cell processes such as budding and mitotic spindle orientation which require the formation of polarized actin cables, functionally redundant with BNI1 /NOTE=Bnr1p; go_component: contractile ring (sensu Saccharomyces) [goid GO:0000142] [evidence IDA] [pmid 10652251]; go_function: cytoskeletal protein binding [goid GO:0008092] [evidence TAS] [pmid 12419188]; go_process: actin filament organization [goid GO:0007015] [evidence TAS] [pmid 12419188]; go_process: axial budding [goid GO:0007120] [evidence IMP] [pmid 10652251]; go_process: response to osmotic stress [goid GO:0006970] [evidence IGI] [pmid 10652251] --- --- --- --- --- --- S0001421 // BNR1 SGDID:S0001421, Chr IX from 41825-45952, Verified ORF // sgd // 11 // --- /// GENSCAN00000016354 // cdna:Genscan chromosome:SGD1:IX:41825:45952:1 // ensembl // 11 // --- /// YIL159W // cdna:known chromosome:SGD1:IX:41825:45952:1 gene:YIL159W // ensembl // 11 // --- GENEFINDER00000019070 // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene 1.03335594376345 -1.90312127292833 -1.31761136109861 -2.82651890933654 1.37602794798387 Max fold change below threshold 4 2.82651890933654 Max fold change at or above threshold 0.401367645848592 -0.621653562572532 -0.991716360801185 1.21200227752513 56.5869607925415 32.2540286132428 0.569990474156973 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777674_at SPBC4C3.09.S1 --- 2.8263480858515 --- --- --- --- 1.48122823238373 1.92454218864441 0.55140483379364 0.856530010700226 0.633789002895355 0.533936023712158 0.919434010982513 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4C3.09 /DEF=galactosyltransferase family 8 --- --- --- --- --- --- SPBC4C3.09 // |||acetylglucosaminyltransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.59667345462049 1.29928808172071 -2.8263480858515 -2.68628082600028 -1.72933605814092 Max fold change below threshold 0 2.8263480858515 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776862_at SPCC1259.06.S1 --- 2.82627084152538 --- --- --- --- 12.516450881958 18.0867824554443 15.6518697738647 4.42860984802246 0.0375977009534836 0.129638999700546 0.0375977009534836 0.0461426004767418 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1259.06 /DEF=sequence orphan --- --- --- --- --- --- SPCC1259.06 // |||TFIID subunit|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -1.32391620434416 1.4450408207582 -1.56085731465633 1.25050383063671 -2.82627084152538 Max fold change below threshold 4 2.82627084152538 Max fold change at or above threshold PMAAPP No 4 0 PAPP 1 3 0 No No 2 < x = 3
1778623_at YDR082W.S1 Telomere end-binding and capping protein, plays a key role with Pol12p in linking telomerase action with completion of lagging strand synthesis, and in a regulatory step required for telomere capping 2.82614956155513 190.095108032227 458.3359375 STN1 16233 // telomere capping // traceable author statement 783 // nuclear telomere cap complex // traceable author statement 5515 // protein binding // inferred from direct assay 434.226348876953 153.645919799805 226.544296264648 482.445526123047 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR082W /GEN=STN1 /DB_XREF=GI:6320287 /SEG=NC_001136:+610436,611920 /DEF=involved in telomere length regulation, function in telomere metabolism during late S phase /NOTE=Stn1p; go_component: nuclear telomere cap complex [goid GO:0000783] [evidence TAS] [pmid 11352055]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 11230140]; go_process: telomere capping [goid GO:0016233] [evidence TAS] [pmid 11352055] --- --- --- --- --- --- S0002489 // STN1 SGDID:S0002489, Chr IV from 610437-611921, Verified ORF // sgd // 10 // --- /// GENSCAN00000025157 // cdna:Genscan chromosome:SGD1:IV:610959:611921:1 // ensembl // 10 // --- /// YDR082W // cdna:known chromosome:SGD1:IV:610437:611921:1 gene:YDR082W // ensembl // 10 // --- --- No cerevisiae_gene -1.64982688024886 -2.82614956155513 1.29921794139167 -1.91673926925837 1.11104617988016 Max fold change below threshold 4 2.82614956155513 Max fold change at or above threshold 0.692212536734948 -1.07326180279949 -0.614569037000721 0.995618303065265 324.215522766113 158.926370547611 0.490187419749976 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777749_at YLL031C.S1 ER membrane localized phosphoryltransferase that adds phosphoethanolamine onto the third mannose residue of the glycosylphosphatidylinositol (GPI) anchor precursor; similar to human PIG-O protein 2.82586120367387 331.072677612305 902.181884765625 GPI13 6506 // GPI anchor biosynthesis // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from sequence similarity 16772 // transferase activity, transferring phosphorus-containing groups // inferred from mutant phenotype 862.265563964844 357.011627197266 305.133728027344 942.098205566406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL031C /GEN=GPI13 /DB_XREF=GI:6322997 /SEG=NC_001144:-77151,80204 /DEF=ER membrane localized phosphoryltransferase that adds phosphoethanolamine onto the third mannose residue of the glycosylphosphatidylinositol (GPI) anchor precursor; similar to human PIG-O protein /NOTE=Gpi13p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence ISS] [pmid 10793139]; go_function: phosphoethanolamine N-methyltransferase activity [goid GO:0000234] [evidence IMP] [pmid 10793139]; go_process: GPI anchor biosynthesis [goid GO:0006506] [evidence IMP] [pmid 10793139] --- --- --- --- --- S0003954 // span:34-53,455-477,484-506,516-535,556-578,582-601,686-708,718-740,760-782,804-826,905-927,942-964,981-1003 // numtm:13 S0003954 // GPI13 SGDID:S0003954, Chr XII from 80204-77151, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017692 // cdna:Genscan chromosome:SGD1:XII:77151:80204:-1 // ensembl // 11 // --- /// GENEFINDER00000024662 // cdna:GeneFinder chromosome:SGD1:XII:77151:80204:-1 // ensembl // 11 // --- /// YLL031C // cdna:known chromosome:SGD1:XII:77151:80204:-1 gene:YLL031C // ensembl // 11 // --- --- No cerevisiae_gene -1.28748287136289 -2.41523104088821 1.01203926367271 -2.82586120367387 1.09258474991681 Max fold change below threshold 4 2.82586120367387 Max fold change at or above threshold 0.739845248863205 -0.781944108897401 -0.938196696190118 0.980295556224314 616.627281188965 332.013056991728 0.53843394076167 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776912_at YPL162C.S1 Hypothetical protein 2.82562947698713 172.98819732666 425.012985229492 --- --- 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay --- 375.234893798828 132.796920776367 213.179473876953 474.791076660156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL162C /GEN=SVS1 /DB_XREF=GI:6325095 /SEG=NC_001148:-243205,244026 /DEF=Hypothetical ORF /NOTE=Ypl162cp; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0006083 // span:15-34,55-72,95-117,156-178,198-220 // numtm:5 S0006083 // YPL162C SGDID:S0006083, Chr XVI from 244026-243205, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000017064 // cdna:Genscan chromosome:SGD1:XVI:243205:244026:-1 // ensembl // 10 // --- /// YPL162C // cdna:known chromosome:SGD1:XVI:243205:244026:-1 gene:YPL162C // ensembl // 10 // --- --- No cerevisiae_gene 1.324838193394 -2.82562947698713 1.62380546625376 -1.76018303720654 1.26531696413794 Max fold change below threshold 4 2.82562947698713 Max fold change at or above threshold 0.493108779257904 -1.07506052209202 -0.555119480822918 1.13707122365703 299.000591278076 154.599361697594 0.517053698913304 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774614_at YNL200C.S1 Hypothetical protein; similarity to human TGR-CL10C, thyroidal receptor for N-acetylglucosamine 2.82552060536826 1905.77935791016 2312.91625976563 --- --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 2369.97973632813 1782.64184570313 2028.91687011719 2255.85278320313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL200C /GEN=PSY2 /DB_XREF=GI:6324129 /SEG=NC_001146:-263712,264452 /DEF=Hypothetical ORF; similarity to human TGR-CL10C, thyroidal receptor for N-acetylglucosamine /NOTE=Ynl200cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005144 // YNL200C SGDID:S0005144, Chr XIV from 264452-263712, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019880 // cdna:Genscan chromosome:SGD1:XIV:263712:264452:-1 // ensembl // 11 // --- /// GENEFINDER00000020460 // cdna:GeneFinder chromosome:SGD1:XIV:263712:264452:-1 // ensembl // 11 // --- /// YNL200C // cdna:known chromosome:SGD1:XIV:263712:264452:-1 gene:YNL200C // ensembl // 11 // --- --- No cerevisiae_gene -2.82552060536826 -1.32947610426666 1.09877128226534 -1.16810095634487 -1.05059148982362 Max fold change below threshold 4 2.82552060536826 Max fold change at or above threshold 1.00292853887165 -1.25718570783959 -0.309503461943483 0.563760630911418 2109.34780883789 259.870885500435 0.123199637542756 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776116_at SPAPB1A10.13.S1 --- 2.82550806170318 --- --- --- --- 3.06084299087524 6.0684552192688 5.71543025970459 5.33665657043457 0.366210997104645 0.334473013877869 0.274170011281967 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1A10.13 /DEF=sequence orphan --- --- --- --- --- --- SPAPB1A10.13 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.02104205715291 1.9826091169523 2.82550806170318 1.86727325666263 1.74352509630315 Max fold change below threshold 4 2.82550806170318 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769465_at SPAC1002.07c.S1 --- 2.82547089633855 --- --- --- --- 6.49959945678711 11.4507923126221 5.54629516601563 3.40121865272522 0.366210997104645 0.149657994508743 0.129638999700546 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1002.07c /GEN=ats1 /DEF=N-acetyltransferase (predicted) --- --- --- --- --- --- U82218 // Schizosaccharomyces pombe putative acetyltransferase Ats1 (ats1) mRNA, complete cds. // gb // 11 // --- /// SPAC1002.07c // |ats1||N-acetyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.82547089633855 1.76176891957007 -1.34794103636608 -1.17188127610171 -1.91096195817323 Max fold change below threshold 4 2.82547089633855 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770308_at YER041W.S1 Protein of unknown function, has similarity to endonuclease Rth1p; potentially phosphorylated by Cdc28p 2.82394909579667 198.71142578125 586.527770996094 YEN1 --- 5634 // nucleus // inferred from sequence similarity 14 // single-stranded DNA specific endodeoxyribonuclease activity // inferred from sequence similarity 550.518310546875 202.476593017578 194.946258544922 622.537231445313 0.000732421991415322 0.00122069998178631 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER041W /GEN=YEN1 /DB_XREF=GI:6320880 /SEG=NC_001137:+232460,234739 /DEF=Protein of unknown function, has similarity to endonuclease Rth1p; potentially phosphorylated by Cdc28p /NOTE=Yen1p; go_component: nucleus [goid GO:0005634] [evidence ISS] [pmid 9683672]; go_function: single-stranded DNA specific endodeoxyribonuclease activity [goid GO:0000014] [evidence ISS] [pmid 9683672]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000843 // YEN1 SGDID:S0000843, Chr V from 232460-234739, Verified ORF // sgd // 11 // --- /// GENSCAN00000016839 // cdna:Genscan chromosome:SGD1:V:232460:234739:1 // ensembl // 11 // --- /// GENEFINDER00000019759 // cdna:GeneFinder chromosome:SGD1:V:234023:235490:1 // ensembl // 9 // --- /// YER041W // cdna:known chromosome:SGD1:V:232460:234739:1 gene:YER041W // ensembl // 11 // --- --- No cerevisiae_gene -1.66010262618982 -2.71892322140704 1.02222891868148 -2.82394909579667 1.13082020982535 Max fold change below threshold 4 2.82394909579667 Max fold change at or above threshold 0.699134169686307 -0.841903460546195 -0.875245810632786 1.01801510149267 392.619598388672 225.848941454328 0.575236036054293 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778270_at YDL227C.S1 Site-specific endonuclease required for gene conversion at the MAT locus (homothallic switching) through the generation of a ds DNA break; expression restricted to mother cells in late G1 as controlled by Swi4p-Swi6p, Swi5p and Ash1p 2.82350390762346 24.3196964263916 12.8188986778259 HO 7533 // mating type switching // inferred from mutant phenotype /// 7534 // gene conversion at mating-type locus // traceable author statement 5634 // nucleus // traceable author statement 4519 // endonuclease activity // inferred from direct assay 11.2046785354614 31.63645362854 17.0029392242432 14.4331188201904 0.064453125 0.00805663969367743 0.0676269978284836 0.0676269978284836 M P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL227C /GEN=HO /DB_XREF=GI:6319974 /SEG=NC_001136:-46272,48032 /DEF=Site-specific endonuclease required for gene conversion at the MAT locus (homothallic switching) through the generation of a ds DNA break; expression restricted to mother cells in late G1 as controlled by Swi4p-Swi6p, Swi5p and Ash1p /NOTE=Hop; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 10915865]; go_function: endonuclease activity [goid GO:0004519] [evidence IDA] [pmid 6313222]; go_process: gene conversion at MAT locus [goid GO:0007534] [evidence TAS] [pmid 10915865]; go_process: mating-type switching/recombination [goid GO:0007533] [evidence IMP] [pmid 6297747] --- --- --- --- --- --- S0002386 // HO SGDID:S0002386, Chr IV from 48032-46272, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023964 // cdna:GeneFinder chromosome:SGD1:IV:46272:48005:-1 // ensembl // 11 // --- /// GENSCAN00000024932 // cdna:Genscan chromosome:SGD1:IV:46272:48032:-1 // ensembl // 11 // --- /// YDL227C // cdna:known chromosome:SGD1:IV:46272:48032:-1 gene:YDL227C // ensembl // 11 // --- --- No cerevisiae_gene 1.04495190509251 2.82350390762346 -1.31128610863123 1.51748567979268 1.28813323599703 Max fold change below threshold 4 2.82350390762346 Max fold change at or above threshold -0.815694255292045 1.44729878361065 -0.173487520112136 -0.458117008206465 18.5692975521088 9.02865132231509 0.486213939810005 MPPAAA No 4 0 MPAA 2 1 1 No No x = 1
1770057_at SPBC4C3.03.S1 --- 2.82332795088168 --- --- --- --- 0.76945036649704 0.333633154630661 1.39473402500153 2.17241072654724 0.870360970497131 0.919434010982513 0.805419981479645 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4C3.03 /DEF=homoserine kinase (predicted) --- --- --- --- --- --- SPBC4C3.03 // |||homoserine kinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.07485989681031 -2.30627668688634 -1.26495672141415 1.81263676739946 2.82332795088168 Max fold change below threshold 0 2.82332795088168 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779015_at SPBC1E8.03c.S1 --- 2.82284614494273 --- --- --- --- 14.5483589172363 13.7938871383667 5.63872575759888 5.15379095077515 0.0239257998764515 0.0375977009534836 0.274170011281967 0.0952147990465164 P P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1E8.03c /DEF=sequence orphan --- --- --- --- --- --- SPBC1E8.03c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.76645574526946 -1.05469609627087 -1.69656354648115 -2.58007917792963 -2.82284614494273 Max fold change below threshold 4 2.82284614494273 Max fold change at or above threshold PAPPAA No 4 0 PPAA 2 2 0 No No 1 < x = 2
1779199_at YLR263W.S1 Protein involved in chromosome segregation during the first meiotic division; component of the axial elements of the synaptonemal complex; interacts with Hop1p; required for wild-type levels of Mek1p kinase activity 2.8223647406566 92.2240142822266 211.937515258789 RED1 7130 // synaptonemal complex formation // inferred from physical interaction /// 7130 // synaptonemal complex formation // inferred from mutant phenotype /// 7130 // synaptonemal complex formation // traceable author statement 795 // synaptonemal complex // inferred from direct assay --- 196.999603271484 114.648544311523 69.7994842529297 226.875427246094 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR263W /GEN=RED1 /DB_XREF=GI:6323293 /SEG=NC_001144:+670342,672825 /DEF=Required for full chr. pairing & chr. condensation seen by in situ hybridization, axial elements, stable localization of Hop1p & synaptonemal complexes; at HIS2 required for normal levels of double strand breaks /NOTE=Red1p; go_component: synaptonemal complex [goid GO:0000795] [evidence IDA] [pmid 9060462]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: synaptonemal complex formation [goid GO:0007130] [evidence TAS] [pmid 2550770]; go_process: synaptonemal complex formation [goid GO:0007130] [evidence IMP,IPI] [pmid 9880561] --- --- --- --- scop // a.4.5.C-terminal fragment of elongation factor SelB // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; C-terminal fragment of elongation factor SelB // 3.0 --- S0004253 // RED1 SGDID:S0004253, Chr XII from 670342-672825, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024669 // cdna:GeneFinder chromosome:SGD1:XII:670675:672825:1 // ensembl // 11 // --- /// GENSCAN00000018026 // cdna:Genscan chromosome:SGD1:XII:671530:672825:1 // ensembl // 11 // --- /// YLR263W // cdna:known chromosome:SGD1:XII:670342:672825:1 gene:YLR263W // ensembl // 11 // --- --- No cerevisiae_gene -1.2480961326377 -1.71829136125965 -1.07028380758948 -2.8223647406566 1.15165423421405 Max fold change below threshold 4 2.8223647406566 Max fold change at or above threshold 0.619284074064055 -0.516068063215832 -1.13439012046194 1.03117410961371 152.080764770508 72.5334953411549 0.476940627242433 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775631_at YFL007W.S1 Protein involved in assembly of proteasomal core particles in the nucleus; required for normal resistance to bleomycin, may be involved in protection against oxidative damage 2.82096338536085 556.662887573242 1332.22857666016 BLM3 30163 // protein catabolism // inferred from mutant phenotype /// 43248 // proteasome assembly // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 16020 // membrane // inferred from sequence similarity 8538 // proteasome activator activity // inferred from mutant phenotype /// 8538 // proteasome activator activity // inferred from direct assay 1348.60412597656 478.065093994141 635.260681152344 1315.85302734375 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL007W /GEN=BLM3 /DB_XREF=GI:37362646 /SEG=NC_001138:+123474,129905 /DEF=Protein required for normal resistance to bleomycin, may be involved in protection against oxidative damage /NOTE=Blm3p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 11842813]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 2.09999990463257 --- S0001887 // BLM3 SGDID:S0001887, Chr VI from 123474-129905, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018564 // cdna:GeneFinder chromosome:SGD1:VI:123474:129905:1 // ensembl // 11 // --- /// GENSCAN00000023236 // cdna:Genscan chromosome:SGD1:VI:123474:129905:1 // ensembl // 11 // --- /// YFL007W // cdna:known chromosome:SGD1:VI:123474:129905:1 gene:YFL007W // ensembl // 11 // --- --- No cerevisiae_gene -2.22208846767268 -2.82096338536085 -1.01563754721257 -2.12291452310607 -1.02488963277223 Max fold change below threshold 4 2.82096338536085 Max fold change at or above threshold 0.893076907662627 -1.03057064857754 -0.683212407327859 0.820706148242775 944.445732116699 452.546012994146 0.479165713396678 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777056_at YHR168W.S1 Putative GTPase, member of the Obg family; peripheral protein of the mitochondrial inner membrane that associates with the large ribosomal subunit; required for mitochondrial translation, possibly via a role in ribosome assembly 2.820761963764 98.5815048217773 205.173553466797 MTG2 6412 // protein biosynthesis // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay /// 19898 // extrinsic to membrane // inferred from direct assay 3924 // GTPase activity // inferred from sequence similarity /// 43022 // ribosome binding // inferred from direct assay 213.705688476563 75.7616882324219 121.401321411133 196.641418457031 0.00122069998178631 0.0239257998764515 0.00292969006113708 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR168W /GEN=THP2 /DB_XREF=GI:6321962 /SEG=NC_001140:+440377,441876 /DEF=Mitochondrial GTP binding protein with similarity to members of the Obg family; associates with the large mitochondrial ribosomal subunit and is required for mitochondrial translation; partially suppresses petite formation in a mrm2 mutant /NOTE=Yhr168wp --- --- --- --- --- --- S0001211 // MTG2 SGDID:S0001211, Chr VIII from 440378-441877, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016694 // cdna:Genscan chromosome:SGD1:VIII:440378:441877:1 // ensembl // 11 // --- /// GENEFINDER00000020142 // cdna:GeneFinder chromosome:SGD1:VIII:440378:441877:1 // ensembl // 11 // --- /// YHR168W // cdna:known chromosome:SGD1:VIII:440378:441877:1 gene:YHR168W // ensembl // 11 // --- --- No cerevisiae_gene -1.70329909688304 -2.820761963764 1.61825982177181 -1.76032423694002 -1.08677861537731 Max fold change below threshold 4 2.820761963764 Max fold change at or above threshold 0.955967863070187 -1.17687957345225 -0.471213691233697 0.692125401615762 151.877529144287 64.6759809829883 0.425842989067492 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1779170_at SPAC25B8.18.S1 --- 2.82070599751361 --- --- --- --- 0.510514736175537 1.44001197814941 0.676897048950195 0.990413308143616 0.888427972793579 0.665526986122131 0.780517995357513 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25B8.18 /DEF=sequence orphan --- --- --- --- --- --- SPAC25B8.18 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.55381414348788 2.82070599751361 1.42790206112867 1.32591089146827 1.94002883357136 Max fold change below threshold 0 2.82070599751361 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775766_at YOR113W.S1 Zinc-finger transcription factor, involved in induction of CLN3 transcription in response to glucose; genetic and physical interactions indicate a possible role in mitochondrial transcription or genome maintenance 2.81955780400438 649.462631225586 506.330871582031 AZF1 6355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 6355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 9743 // response to carbohydrate stimulus // inferred from direct assay /// 9743 // response to carbohydrate stimulus // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 3677 // DNA binding // inferred from physical interaction /// 16563 // transcriptional activator activity // inferred from mutant phenotype /// 16563 // transcriptional activator activity // inferred from direct assay 480.523620605469 511.776763916016 787.148498535156 532.138122558594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR113W /GEN=AZF1 /DB_XREF=GI:6324687 /SEG=NC_001147:+534075,536819 /DEF=Zinc-finger transcription factor, involved in induction of CLN3 transcription in response to glucose; genetic and physical interactions indicate a possible role in mitochondrial transcription or genome maintenance /NOTE=Azf1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9799362]; go_function: DNA binding [goid GO:0003677] [evidence IPI] [pmid 11839825]; go_function: transcriptional activator activity [goid GO:0016563] [evidence IMP] [pmid 11839825]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence IDA,IMP] [pmid 11839825]; go_process: response to carbohydrate stimulus [goid GO:0009743] [evidence IDA,IMP] [pmid 11839825] --- --- --- --- --- --- S0005639 // AZF1 SGDID:S0005639, Chr XV from 534075-536819, Verified ORF // sgd // 10 // --- /// GENSCAN00000017545 // cdna:Genscan chromosome:SGD1:XV:534075:536819:1 // ensembl // 10 // --- /// GENEFINDER00000022813 // cdna:GeneFinder chromosome:SGD1:XV:534075:536819:1 // ensembl // 10 // --- /// YOR113W // cdna:known chromosome:SGD1:XV:534075:536819:1 gene:YOR113W // ensembl // 10 // --- --- No cerevisiae_gene -2.81955780400438 1.06503976489474 1.33650793691117 1.63810573462202 1.10741303806895 Max fold change below threshold 4 2.81955780400438 Max fold change at or above threshold -0.690066093358136 -0.468580614431349 1.48292998784584 -0.324283280056357 577.896751403809 141.106963138101 0.244173310881794 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777096_at YCR106W.S1 Zinc cluster protein involved in conferring resistance to cycloheximide 2.81913099197008 57.3032302856445 42.7054386138916 RDS1 9410 // response to xenobiotic stimulus // inferred from mutant phenotype 5634 // nucleus // inferred from curator 3677 // DNA binding // inferred from physical interaction /// 3700 // transcription factor activity // inferred from sequence similarity /// 3700 // transcription factor activity // inferred from mutant phenotype 33.3625335693359 55.9689254760742 58.6375350952148 52.0483436584473 0.00195312988944352 0.00195312988944352 0.000732421991415322 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR106W /GEN=RDS1 /DB_XREF=GI:6319950 /SEG=NC_001135:+310954,313452 /DEF=Regulator of drug sensitivity /NOTE=Rds1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: transcription factor activity [goid GO:0003700] [evidence IMP,ISS] [pmid 11943786]; go_process: response to xenobiotic stimulus [goid GO:0009410] [evidence IMP] [pmid 11943786] --- --- --- --- --- --- S0000703 // RDS1 SGDID:S0000703, Chr III from 310954-313452, Verified ORF // sgd // 10 // --- /// GENSCAN00000022533 // cdna:Genscan chromosome:SGD1:III:310954:313452:1 // ensembl // 10 // --- /// YCR106W // cdna:known chromosome:SGD1:III:310954:313452:1 gene:YCR106W // ensembl // 10 // --- --- No cerevisiae_gene 1.88740808718437 1.67759817640217 2.81913099197008 1.75758639473081 1.560083665417 Max fold change below threshold 4 2.81913099197008 Max fold change at or above threshold -1.45727507993234 0.522302239227268 0.755984778994586 0.178988061710487 50.0043344497681 11.4198074952361 0.228376352188186 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780245_at SPAC222.06.S1 --- 2.81762799734426 --- --- --- --- 0.975135922431946 2.74757027626038 1.23130702972412 1.41403746604919 0.953857004642487 0.780517995357513 0.976073980331421 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC222.06 /DEF=nuclear HMG-like acidic protein --- --- --- --- --- --- SPAC222.06 // |||nuclear HMG-like acidic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.12001308552178 2.81762799734426 2.59614429428341 1.26270297442565 1.45009268300018 Max fold change below threshold 1 2.81762799734426 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775422_at YBL008W.S1 Non-essential transcriptional corepressor involved in the cell cycle-regulated transcription of histone H2A, H2B, H3 and H4 genes; contributes to nucleosome formation, heterochromatic gene silencing, and formation of functional kinetochores 2.81613687579557 122.65327835083 295.238571166992 HIR1 6357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay 775 // chromosome, pericentric region // inferred from direct assay /// 5634 // nucleus // inferred from physical interaction 3714 // transcription corepressor activity // inferred from direct assay 295.008514404297 117.91625213623 127.39030456543 295.468627929688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL008W /GEN=HIR1 /DB_XREF=GI:6319463 /SEG=NC_001134:+209618,212140 /DEF=Non-essential transcriptional corepressor involved in the cell cycle-regulated transcription of histone H2A, H2B, H3 and H4 genes; contributes to nucleosome formation, heterochromatic gene silencing, and formation of functional kinetochores /NOTE=Hir1p; go_component: chromosome, pericentric region [goid GO:0000775] [evidence IDA] [pmid 11782447]; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 9504914]; go_function: transcription corepressor activity [goid GO:0003714] [evidence IDA] [pmid 9001207]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IDA] [pmid 9001207] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 1.5 --- S0000104 // HIR1 SGDID:S0000104, Chr II from 209656-212178, Verified ORF // sgd // 11 // --- /// GENSCAN00000021131 // cdna:Genscan chromosome:SGD1:II:209656:212178:1 // ensembl // 11 // --- /// GENEFINDER00000022299 // cdna:GeneFinder chromosome:SGD1:II:209656:212178:1 // ensembl // 11 // --- /// YBL008W // cdna:known chromosome:SGD1:II:209656:212178:1 gene:YBL008W // ensembl // 11 // --- --- No cerevisiae_gene -2.81613687579557 -2.50184778654149 -1.16554639559595 -2.3157846698826 1.00155966185017 Max fold change below threshold 4 2.81613687579557 Max fold change at or above threshold 0.863065085789068 -0.912876692825114 -0.817867654562746 0.867679261598792 208.945924758911 99.7173806036911 0.47724013147779 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772704_at SPAC1142.08.S1 --- 2.81568213404004 --- --- --- --- 5.6742467880249 10.6577558517456 5.30096244812012 9.01344203948975 0.194580003619194 0.129638999700546 0.171387001872063 0.018554700538516 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1142.08 /DEF=transcription factor (predicted) --- --- --- --- --- --- SPAC1142.08 // |fhl1|SPAC8C9.01|fork head transcription factor Fhl1 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.0859004908005 1.87826794460862 2.81568213404004 -1.07041822000402 1.58848255569567 Max fold change below threshold 4 2.81568213404004 Max fold change at or above threshold APAAAP No 4 0 AAAP 3 1 0 No No x = 1
1772531_at SPAC25B8.12c.S1 --- 2.81535548196125 --- --- --- --- 1.515176653862 4.26576089859009 2.95891118049622 2.97760915756226 0.567627012729645 0.398925989866257 0.466064006090164 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25B8.12c /DEF=conserved protein (mainly bacterial) --- --- --- --- --- --- SPAC25B8.12c // |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.73477979103907 2.81535548196125 1.30456224096147 1.95284897833815 1.96518943845438 Max fold change below threshold 3 2.81535548196125 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779096_at YCL021W-A.S1 Hypothetical protein 2.81448335656243 30.1374444961548 43.2643489837646 --- --- --- --- 44.7001533508301 37.9828300476074 22.2920589447021 41.8285446166992 0.000732421991415322 0.00585938012227416 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL021W-A /GEN=KCC4 /DB_XREF=GI:10383769 /SEG=NC_001135:+83619,83996 /DEF=Hypothetical ORF /NOTE=Ycl021w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0007549 // span:103-120 // numtm:1 S0007549 // YCL021W-A SGDID:S0007549, Chr III from 83619-83996, Uncharacterized ORF // sgd // 11 // --- /// YCL021W-A // cdna:known chromosome:SGD1:III:83619:83996:1 gene:YCL021W-A // ensembl // 11 // --- --- No cerevisiae_gene -2.81448335656243 -1.17685157464052 1.19968096609992 -2.00520523751142 -1.0686518921575 Max fold change below threshold 4 2.81448335656243 Max fold change at or above threshold 0.800541195439622 0.128291974179648 -1.44199252438484 0.513159354765573 36.7008967399597 9.99231102214237 0.272263402525062 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1777330_at SPCC962.06c.S1 --- 2.81422259430833 --- --- --- --- 5.97816562652588 15.0550203323364 16.8238887786865 7.64279937744141 0.633789002895355 0.111571997404099 0.129638999700546 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC962.06c /GEN=bpb1 /DEF=zinc finger protein --- --- --- --- --- --- AF073779 // Schizosaccharomyces pombe putative splicing factor BBP/SF1 (bbp/sf1) mRNA, complete cds. // gb // 11 // --- /// SPCC962.06c // |bpb1|sf1|zinc finger protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.65379805668318 2.51833443113978 1.00410038284704 2.81422259430833 1.27845226360563 Max fold change below threshold 4 2.81422259430833 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769391_at SPBC106.10.S1 --- 2.81402621936532 --- --- --- --- 11.771050453186 8.41808032989502 4.18299245834351 7.10304975509644 0.194580003619194 0.274170011281967 0.334473013877869 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC106.10 /GEN=pka1 /DEF=cAMP-dependent protein kinase (catalytic subunit) (PMID 8144551) --- --- --- --- --- --- U08622 // Schizosaccharomyces pombe cAMP-dependent protein kinase (pka1) mRNA, complete cds. // gb // 11 // --- /// SPBC106.10 // |pka1|tpk, git6|cAMP-dependent protein kinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.37008576827414 -1.3983057884805 -1.80269568036828 -2.81402621936532 -1.65718259888864 Max fold change below threshold 4 2.81402621936532 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773491_at YJL092W.S1 DNA helicase and DNA-dependent ATPase involved in DNA repair, required for proper timing of commitment to meiotic recombination and the transition from Meiosis I to Meiosis II; potential Cdc28p substrate 2.81395614775785 203.500518798828 541.526947021484 HPR5 6281 // DNA repair // inferred from genetic interaction /// 6303 // double-strand break repair via nonhomologous end-joining // inferred from direct assay 5634 // nucleus // inferred from sequence similarity 3678 // DNA helicase activity // inferred from sequence similarity /// 3678 // DNA helicase activity // inferred from direct assay 527.925842285156 187.609832763672 219.391204833984 555.128051757813 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL092W /GEN=HPR5 /DB_XREF=GI:6322369 /SEG=NC_001142:+257339,260863 /DEF=DNA helicase and DNA-dependent ATPase involved in DNA repair, required for proper timing of commitment to meiotic recombination and the transition from Meiosis I to Meiosis II; potential Cdc28p substrate /NOTE=Hpr5p; go_component: nucleus [goid GO:0005634] [evidence ISS] [pmid 8419328]; go_function: DNA helicase activity [goid GO:0003678] [evidence ISS] [pmid 2552405]; go_function: DNA helicase activity [goid GO:0003678] [evidence IDA] [pmid 8419328]; go_process: DNA repair [goid GO:0006281] [evidence IGI] [pmid 7768432]; go_process: double-strand break repair via nonhomologous end-joining [goid GO:0006303] [evidence IDA] [pmid 10908335] --- --- --- --- scop // a.2.10.Epsilon subunit of F1F0-ATP synthase C-terminal domain // All alpha proteins; Long alpha-hairpin; Epsilon subunit of F1F0-ATP synthase C-terminal domain; Epsilon subunit of F1F0-ATP synthase C-terminal domain // 7.90000009536743 /// scop // a.4.1.Myb // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb // 8.89999961853027 --- S0003628 // HPR5 SGDID:S0003628, Chr X from 257339-260863, Verified ORF // sgd // 11 // --- /// GENSCAN00000024068 // cdna:Genscan chromosome:SGD1:X:257339:260863:1 // ensembl // 11 // --- /// GENEFINDER00000024358 // cdna:GeneFinder chromosome:SGD1:X:258224:260863:1 // ensembl // 11 // --- /// YJL092W // cdna:known chromosome:SGD1:X:257339:260863:1 gene:YJL092W // ensembl // 11 // --- --- No cerevisiae_gene -1.75246087041793 -2.81395614775785 -1.1816923245385 -2.40632181533733 1.05152657304085 Max fold change below threshold 4 2.81395614775785 Max fold change at or above threshold 0.793301481332056 -0.943842397353605 -0.781614308155558 0.932155224177107 372.513732910156 195.905482382363 0.525901369734502 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775299_at SPBC32H8.06.S1 --- 2.81265908334169 --- --- --- --- 7.85054159164429 8.28816604614258 3.21144223213196 4.37812232971191 0.5 0.0461426004767418 0.398925989866257 0.432372987270355 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32H8.06 /DEF=TPR repeat protein --- --- --- --- --- --- SPBC32H8.06 // |||TPR repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.62273433617506 1.05574449219708 -2.81265908334169 -2.44455326429229 -1.79312979410533 Max fold change below threshold 4 2.81265908334169 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1774323_at YIR029W.S1 Allantoicase, converts allantoate to urea and ureidoglycolate in the second step of allantoin degradation; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation 2.81263748697847 329.340957641602 165.375869750977 DAL2 256 // allantoin catabolism // inferred from mutant phenotype --- 4037 // allantoicase activity // inferred from sequence similarity 162.765182495117 222.891296386719 435.790618896484 167.986557006836 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR029W /GEN=DAL2 /DB_XREF=GI:6322220 /SEG=NC_001141:+410804,411835 /DEF=Allantoicase, converts allantoate to urea and ureidoglycolate in the second step of allantoin degradation; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation /NOTE=Dal2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: allantoicase activity [goid GO:0004037] [evidence ISS] [pmid 1916277]; go_process: allantoin catabolism [goid GO:0000256] [evidence IMP] [pmid 1916277] --- --- --- --- --- --- S0001468 // DAL2 SGDID:S0001468, Chr IX from 410804-411835, Verified ORF // sgd // 11 // --- /// GENSCAN00000016498 // cdna:Genscan chromosome:SGD1:IX:410804:411835:1 // ensembl // 11 // --- /// GENEFINDER00000019140 // cdna:GeneFinder chromosome:SGD1:IX:410804:411835:1 // ensembl // 11 // --- /// YIR029W // cdna:known chromosome:SGD1:IX:410804:411835:1 gene:YIR029W // ensembl // 11 // --- --- No cerevisiae_gene -2.81263748697847 1.36940402713833 1.80958207567485 2.67741916432009 1.03207918568134 Max fold change below threshold 4 2.81263748697847 Max fold change at or above threshold -0.658150400525183 -0.190358529025751 1.46603610671198 -0.617527177161042 247.358413696289 128.531762851879 0.519617509391422 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769904_at YDL108W.S1 Serine/threonine protein kinase, subunit of the transcription factor TFIIH; involved in transcription initiation at RNA polymerase II promoters 2.81122114923582 168.299858093262 475.360443115234 KIN28 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 6468 // protein amino acid phosphorylation // traceable author statement /// 7070 // negative regulation of transcription from RNA polymerase II promoter, mitotic // traceable author statement 5675 // transcription factor TFIIH complex // traceable author statement 4693 // cyclin-dependent protein kinase activity // traceable author statement /// 16251 // general RNA polymerase II transcription factor activity // traceable author statement 440.521820068359 156.701232910156 179.898483276367 510.199066162109 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL108W /GEN=KIN28 /DB_XREF=GI:6320095 /SEG=NC_001136:+267698,268699 /DEF=serine-threonine kinase, subunit of transcription factor TFIIK, a subcomplex of TFIIH /NOTE=Kin28p; go_component: transcription factor TFIIH complex [goid GO:0005675] [evidence TAS] [pmid 9774381]; go_function: cyclin-dependent protein kinase activity [goid GO:0004693] [evidence TAS] [pmid 9774381]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9774381]; go_process: negative regulation of transcription from Pol II promoter, mitotic [goid GO:0007070] [evidence TAS] [pmid 10384273]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 9774381]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 10384286] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-83 /// hanks // 3.1.7 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; PCTAIRE1 // 1.0E-81 --- --- S0002266 // KIN28 SGDID:S0002266, Chr IV from 267698-267725,267807-268699, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000025018 // cdna:Genscan chromosome:SGD1:IV:267923:268699:1 // ensembl // 11 // --- /// YDL108W // cdna:known chromosome:SGD1:IV:267698:268699:1 gene:YDL108W // ensembl // 11 // --- --- No cerevisiae_gene -1.37428284617363 -2.81122114923582 1.67938095543899 -2.44872448085964 1.15816979527356 Max fold change below threshold 4 2.81122114923582 Max fold change at or above threshold 0.660136413413858 -0.918409960611856 -0.789392063004104 1.0476656102021 321.830150604248 179.798700772018 0.558675750032864 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776438_at SPAC1002.09c.S1 --- 2.81063693300147 --- --- --- --- 3.43789339065552 7.6842188835144 2.80614495277405 5.50713062286377 0.665526986122131 0.398925989866257 0.633789002895355 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1002.09c /GEN=dld1 /DEF=dihydrolipoamide dehydrogenase (predicted) --- --- --- --- --- --- L40360 // Schizosaccharomyces pombe dihydrolipoamide dehydrogenase (DLDH) mRNA, complete cds. // gb // 10 // --- /// SPAC1002.09c // |dld1|dldh|dihydrolipoamide dehydrogenase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.54559352324653 2.23515333674999 2.81063693300147 -1.22513036514986 1.60189104113368 Max fold change below threshold 4 2.81063693300147 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772330_at YDR414C.S1 Predicted membrane protein required for the retention of lumenal endoplasmic reticulum proteins; mutants secrete the endogenous ER protein, BiP (Kar2p) 2.80973797760007 69.8037033081055 193.655303955078 ERD1 6621 // protein-ER retention // inferred from mutant phenotype 16020 // membrane // inferred from direct assay --- 178.159729003906 76.1994552612305 63.4079513549805 209.15087890625 0.000244141003349796 0.000732421991415322 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR414C /GEN=ERD1 /DB_XREF=GI:6320622 /SEG=NC_001136:-1295586,1296674 /DEF=Predicted membrane protein required for the retention of lumenal endoplasmic reticulum proteins; mutants secrete the endogenous ER protein, BiP (Kar2p) /NOTE=Erd1p; go_component: membrane [goid GO:0016020] [evidence IDA] [pmid 2178921]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-ER retention [goid GO:0006621] [evidence IMP] [pmid 2178921] --- --- --- --- --- S0002822 // span:25-44,78-100,110-130 // numtm:3 S0002822 // ERD1 SGDID:S0002822, Chr IV from 1296676-1295588, reverse complement, Verified ORF // sgd // 11 // --- /// YDR414C // cdna:known chromosome:SGD1:IV:1295588:1296676:-1 gene:YDR414C // ensembl // 11 // --- --- No cerevisiae_gene 2.53954649741056 -2.33807090081065 -1.39555766663053 -2.80973797760007 1.17395148766568 Max fold change below threshold 4 2.80973797760007 Max fold change at or above threshold 0.637743006696274 -0.762733752113564 -0.938431632016669 1.06342237743396 131.729503631592 72.8039741475784 0.552677814312498 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773786_at SPAC222.08c.S1 --- 2.809362840792 --- --- --- --- 0.539543569087982 1.32501780986786 1.18267691135406 0.512566924095154 0.953857004642487 0.753906011581421 0.780517995357513 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC222.08c /DEF=imidazoleglycerol phosphate synthase activity (predicted) --- --- --- --- --- --- SPAC222.08c // |||pyridoxine biosynthesis protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.95538619413 2.4558124418156 2.809362840792 2.19199519577854 -1.05263048340556 Max fold change below threshold 0 2.809362840792 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775949_at YHR047C.S1 Arginine/alanine aminopeptidase, overproduction stimulates glycogen accumulation 2.80735559459634 310.339424133301 756.413909912109 AAP1' 5977 // glycogen metabolism // inferred from mutant phenotype /// 6508 // proteolysis and peptidolysis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4177 // aminopeptidase activity // inferred from sequence similarity 705.374694824219 251.259475708008 369.419372558594 807.453125 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR047C /GEN=AAP1' /DB_XREF=GI:6321837 /SEG=NC_001140:-198732,201302 /DEF=Arginine/alanine aminopeptidase, overproduction stimulates glycogen accumulation /NOTE=Aap1'p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: aminopeptidase activity [goid GO:0004177] [evidence ISS] [pmid 8100228]; go_process: glycogen metabolism [goid GO:0005977] [evidence IMP] [pmid 8100228]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence IMP] [pmid 8100228] --- --- --- --- --- --- S0001089 // AAP1' SGDID:S0001089, Chr VIII from 201302-198732, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016594 // cdna:Genscan chromosome:SGD1:VIII:198732:201302:-1 // ensembl // 11 // --- /// GENEFINDER00000020265 // cdna:GeneFinder chromosome:SGD1:VIII:198732:201302:-1 // ensembl // 11 // --- /// YHR047C // cdna:known chromosome:SGD1:VIII:198732:201302:-1 gene:YHR047C // ensembl // 11 // --- --- No cerevisiae_gene 1.52399782674514 -2.80735559459634 -1.09813797920002 -1.90941446827437 1.1447151860207 Max fold change below threshold 4 2.80735559459634 Max fold change at or above threshold 0.648282890540453 -1.06333631027272 -0.617976322978809 1.03302974271107 533.376667022705 265.313230244476 0.497421890847696 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772127_at SPAC3F10.06c.S1 --- 2.80666456192193 --- --- --- --- 13.2301168441772 19.3278903961182 4.71382188796997 5.32336235046387 0.00415039015933871 0.00805663969367743 0.149657994508743 0.194580003619194 P P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3F10.06c /DEF=initiator tRNA phosphoribosyl transferase (predicted) --- --- --- --- --- --- SPAC3F10.06c // |||initiator methionine tRNA 2'-O-ribosyl phosphate transferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.41195475078858 1.46090095981462 -1.88273229402569 -2.80666456192193 -2.48529331147717 Max fold change below threshold 4 2.80666456192193 Max fold change at or above threshold PPPAAA No 3 0 PPAA 2 2 0 No No 1 < x = 2
1770913_at YGR240C-A.S1 Identified by fungal homology and RT-PCR 2.80651193863333 250.281623840332 590.820831298828 --- --- --- --- 594.9931640625 288.558746337891 212.004501342773 586.648498535156 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR240C-A /GEN=PFK1 /DB_XREF=GI:33438801 /SEG=NC_001139:-974581,974781 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ygr240c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028551 // YGR240C-A SGDID:S0028551, Chr VII from 974782-974582, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YGR240C-A // cdna:known chromosome:SGD1:VII:974582:974782:-1 gene:YGR240C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.12449103936285 -2.06194811841117 -2.72115412999036 -2.80651193863333 -1.0142243021983 Max fold change below threshold 4 2.80651193863333 Max fold change at or above threshold 0.876116952277854 -0.662918864036992 -1.0474048033557 0.834206715114835 420.55122756958 199.108048348318 0.473445409965842 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771692_at YGR087C.S1 Minor isoform of pyruvate decarboxylase, key enzyme in alcoholic fermentation, decarboxylates pyruvate to acetaldehyde, regulation is glucose- and ethanol-dependent, involved in amino acid catabolism 2.80638890539168 219.616882324219 547.141296386719 PDC6 6067 // ethanol metabolism // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4737 // pyruvate decarboxylase activity // traceable author statement 521.130310058594 185.694259643555 253.539505004883 573.152282714844 0.00195312988944352 0.0239257998764515 0.0239257998764515 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR087C /GEN=PDC6 /DB_XREF=GI:6321524 /SEG=NC_001139:-651292,652983 /DEF=Third, minor isozyme of pyruvate decarboxylase /NOTE=Pdc6p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: pyruvate decarboxylase activity [goid GO:0004737] [evidence TAS] [pmid 10231381]; go_process: ethanol metabolism [goid GO:0006067] [evidence IMP] [pmid 1744053] --- --- --- --- --- --- S0003319 // PDC6 SGDID:S0003319, Chr VII from 652985-651294, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019406 // cdna:Genscan chromosome:SGD1:VII:651294:652985:-1 // ensembl // 11 // --- /// GENEFINDER00000021472 // cdna:GeneFinder chromosome:SGD1:VII:651294:652985:-1 // ensembl // 11 // --- /// YGR087C // cdna:known chromosome:SGD1:VII:651294:652985:-1 gene:YGR087C // ensembl // 11 // --- --- No cerevisiae_gene -2.31580584734129 -2.80638890539168 1.3425921555588 -2.05542055486997 1.09982526760035 Max fold change below threshold 4 2.80638890539168 Max fold change at or above threshold 0.716370507043185 -1.02805318873125 -0.675226313064503 0.986908994752566 383.379089355469 192.290468896734 0.501567441302053 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1771569_at YDR428C.S1 Hypothetical protein 2.80528348541425 207.557373046875 168.286972045898 --- --- --- --- 140.449981689453 158.530578613281 256.584167480469 196.123962402344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR428C /GEN=RPN9 /DB_XREF=GI:6320636 /SEG=NC_001136:-1323442,1324227 /DEF=Hypothetical ORF /NOTE=Ydr428cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002836 // YDR428C SGDID:S0002836, Chr IV from 1324229-1323444, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023526 // cdna:GeneFinder chromosome:SGD1:IV:1323444:1324229:-1 // ensembl // 11 // --- /// YDR428C // cdna:known chromosome:SGD1:IV:1323444:1324229:-1 gene:YDR428C // ensembl // 11 // --- --- No cerevisiae_gene 2.80528348541425 1.12873335194736 1.42735044592174 1.82687220314345 1.39639720876568 Max fold change below threshold 4 2.80528348541425 Max fold change at or above threshold -0.92514109630419 -0.572785265279774 1.33808935549625 0.159837006087711 187.922172546387 51.3134602349613 0.273056976404927 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777771_at SPCC825.05c.S1 --- 2.80487228011201 --- --- --- --- 0.950336039066315 1.76089692115784 2.66557121276855 0.854974508285522 0.969726979732513 0.904784977436066 0.805419981479645 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC825.05c /DEF=PWI domain --- --- --- --- --- --- SPCC825.05c // |||PWI domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.59112500864746 1.85292028163836 -1.46822232859206 2.80487228011201 -1.11153727959915 Max fold change below threshold 1 2.80487228011201 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770941_at YKL048C.S1 Serine/threonine protein kinase that regulates cellular morphogenesis, septin behavior, and cytokinesis; required for the regulation of other kinases; forms part of the bud neck ring 2.80475412014622 223.632682800293 547.817565917969 ELM1 135 // septin checkpoint // traceable author statement /// 902 // cellular morphogenesis // traceable author statement /// 910 // cytokinesis // inferred from mutant phenotype /// 6006 // glucose metabolism // inferred from mutant phenotype /// 6006 // glucose metabolism // inferred from genetic interaction /// 6468 // protein amino acid phosphorylation // traceable author statement /// 6970 // response to osmotic stress // inferred from mutant phenotype /// 7117 // budding cell bud growth // inferred from mutant phenotype /// 7120 // axial bud site selection // inferred from mutant phenotype /// 7124 // pseudohyphal growth // inferred from mutant phenotype 142 // contractile ring (sensu Saccharomyces) // inferred from direct assay 4674 // protein serine/threonine kinase activity // inferred from direct assay 539.424926757813 192.325210571289 254.940155029297 556.210205078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL048C /GEN=ELM1 /DB_XREF=GI:6322803 /SEG=NC_001143:-346859,348781 /DEF=Serine/threonine protein kinase that regulates cellular morphogenesis, septin behavior, and cytokinesis; required for the regulation of other kinases; forms part of the bud neck ring /NOTE=Elm1p; go_component: contractile ring (sensu Saccharomyces) [goid GO:0000142] [evidence IDA] [pmid 10652251]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence IDA] [pmid 9180279]; go_process: axial budding [goid GO:0007120] [evidence IMP] [pmid 10652251]; go_process: bud growth [goid GO:0007117] [evidence IMP] [pmid 10234786]; go_process: cellular morphogenesis [goid GO:0000902] [evidence TAS] [pmid 9427410]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 8395007]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 9891070]; go_process: response to osmotic stress [goid GO:0006970] [evidence IMP] [pmid 10652251]; go_process: septin checkpoint [goid GO:0000135] [evidence TAS] [pmid 10725226] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 6.0E-41 /// hanks // 1.8.7 // AGC group; AGC VIII Flowering plant PVPK1 homologs; PsPK5 // 1.0E-52 --- --- S0001531 // ELM1 SGDID:S0001531, Chr XI from 348781-346859, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018381 // cdna:Genscan chromosome:SGD1:XI:346859:348781:-1 // ensembl // 11 // --- /// YKL048C // cdna:known chromosome:SGD1:XI:346859:348781:-1 gene:YKL048C // ensembl // 11 // --- --- No cerevisiae_gene -1.06962337265701 -2.80475412014622 -1.11425864560395 -2.1158884393705 1.03111698679036 Max fold change below threshold 4 2.80475412014622 Max fold change at or above threshold 0.8130973888574 -1.02311754766114 -0.691874129987791 0.901894288791527 385.725124359131 189.030003668647 0.490064016396945 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772168_at SPAC5H10.03.S1 --- 2.80421547872031 --- --- --- --- 6.67612981796265 6.15264415740967 8.94860649108887 2.38074779510498 0.432372987270355 0.219482004642487 0.0952147990465164 0.326416015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5H10.03 /DEF=phosphoglycerate mutase family --- --- --- --- --- --- SPAC5H10.03 // |||phosphoglycerate mutase family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.53050865411282 -1.08508303863511 1.33221568762317 1.34038832903038 -2.80421547872031 Max fold change below threshold 3 2.80421547872031 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779146_at YMR030W.S1 Protein required for respiratory growth; localized to both the nucleus and mitochondrion; mutant displays decreased transcription of specific nuclear and mitochondrial genes whose products are involved in respiratory growth 2.80410619262425 606.093444824219 491.930755615234 RSF1 6366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 6390 // transcription from mitochondrial promoter // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from mutant phenotype /// 19722 // calcium-mediated signaling // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 457.454223632813 633.352172851563 578.834716796875 526.407287597656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR030W /GEN=RSF1 /DB_XREF=GI:6323672 /SEG=NC_001145:+330792,331922 /DEF=Protein localized to both the nucleus and mitochondrion; mutant displays decreased transcription of specific nuclear and mitochondrial genes whose products are involved in respiratory growth /NOTE=Rsf1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 12734673]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12734673]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 12734673]; go_process: calcium-mediated signaling [goid GO:0019722] [evidence IGI] [pmid 9407035]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IMP] [pmid 12734673]; go_process: transcription from mitochondrial promoter [goid GO:0006390] [evidence IMP] [pmid 12734673] --- --- --- --- --- --- S0004632 // RSF1 SGDID:S0004632, Chr XIII from 330792-331922, Verified ORF // sgd // 11 // --- /// GENSCAN00000018741 // cdna:Genscan chromosome:SGD1:XIII:330792:331922:1 // ensembl // 11 // --- /// GENEFINDER00000022047 // cdna:GeneFinder chromosome:SGD1:XIII:330813:331922:1 // ensembl // 11 // --- /// YMR030W // cdna:known chromosome:SGD1:XIII:330792:331922:1 gene:YMR030W // ensembl // 11 // --- --- No cerevisiae_gene -2.80410619262425 1.38451486538233 1.3715276860491 1.26533910256667 1.15073216160791 Max fold change below threshold 4 2.80410619262425 Max fold change at or above threshold -1.21999624692017 1.12381999137058 0.39738230782277 -0.30120605227318 549.012100219727 75.0476706941094 0.13669584088233 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774069_at YOR097C.S1 Hypothetical protein 2.80403607856385 1108.37432861328 440.675628662109 --- --- --- --- 411.574005126953 1062.68029785156 1154.068359375 469.777252197266 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR097C /GEN=RPS7A /DB_XREF=GI:6324671 /SEG=NC_001147:-506978,507505 /DEF=Hypothetical ORF /NOTE=Yor097cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005623 // span:12-34,49-71 // numtm:2 S0005623 // YOR097C SGDID:S0005623, Chr XV from 507505-506978, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YOR097C // cdna:known chromosome:SGD1:XV:506978:507505:-1 gene:YOR097C // ensembl // 11 // --- GENEFINDER00000022835 // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene -1.28165512462215 2.58199080751898 1.84950636034357 2.80403607856385 1.14141623704432 Max fold change below threshold 4 2.80403607856385 Max fold change at or above threshold -0.935379296913897 0.742619636148433 0.978140428136574 -0.785380767371109 774.524978637695 388.025450967569 0.500985070423504 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776270_at YLR211C.S1 Hypothetical protein 2.80301438784268 57.0084228515625 150.768119812012 --- --- 5737 // cytoplasm // inferred from direct assay --- 131.35725402832 46.8628540039063 67.1539916992188 170.178985595703 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR211C /GEN=CLB4 /DB_XREF=GI:9755338 /SEG=NC_001144:-563794,564533 /DEF=Hypothetical ORF /NOTE=Ylr211cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004201 // YLR211C SGDID:S0004201, Chr XII from 564533-564516,564456-563794, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YLR211C // cdna:known chromosome:SGD1:XII:563794:564533:-1 gene:YLR211C // ensembl // 11 // --- --- No cerevisiae_gene 1.28832152018632 -2.80301438784268 2.10431881778155 -1.95606025352397 1.29554311145247 Max fold change below threshold 4 2.80301438784268 Max fold change at or above threshold 0.481830187886532 -1.00027612412703 -0.644351669400217 1.16279760564072 103.888271331787 57.0096755809787 0.54875949758474 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774513_at YJL183W.S1 Subunit of a Golgi mannosyltransferase complex that also contains Anp1p, Mnn9p, Mnn10p, and Hoc1p, and mediates elongation of the polysaccharide mannan backbone; has homology to Mnn10p 2.80291302789326 419.781585693359 1039.80941772461 MNN11 6486 // protein amino acid glycosylation // inferred from direct assay /// 6486 // protein amino acid glycosylation // inferred from mutant phenotype 136 // alpha-1,6-mannosyltransferase complex // inferred from physical interaction 9 // alpha-1,6-mannosyltransferase activity // inferred from direct assay 990.553039550781 353.401275634766 486.161895751953 1089.06579589844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL183W /GEN=MNN11 /DB_XREF=GI:6322278 /SEG=NC_001142:+84066,85334 /DEF=member of a cis Golgi complex that is involved in mannan synthesis, other complex members include Mnn10p, Hoc1p, Anp1p, Mnn9p /NOTE=Mnn11p; go_component: mannosyltransferase complex [goid GO:0000136] [evidence IPI] [pmid 9430634]; go_function: alpha-1,6-mannosyltransferase activity [goid GO:0000009] [evidence IDA] [pmid 10635561]; go_process: protein amino acid glycosylation [goid GO:0006486] [evidence IDA,IMP] [pmid 10635561] --- --- --- --- --- S0003719 // span:32-51 // numtm:1 S0003719 // MNN11 SGDID:S0003719, Chr X from 84066-85334, Verified ORF // sgd // 11 // --- /// GENSCAN00000024000 // cdna:Genscan chromosome:SGD1:X:84066:85334:1 // ensembl // 11 // --- /// GENEFINDER00000024471 // cdna:GeneFinder chromosome:SGD1:X:84066:85334:1 // ensembl // 11 // --- /// YJL183W // cdna:known chromosome:SGD1:X:84066:85334:1 gene:YJL183W // ensembl // 11 // --- --- No cerevisiae_gene 1.53036267113499 -2.80291302789326 -1.06802831128195 -2.03749625013017 1.09945227808531 Max fold change below threshold 4 2.80291302789326 Max fold change at or above threshold 0.715816387165511 -1.03325548050646 -0.668808767914029 0.986247861254973 729.795501708984 364.279922221876 0.499153422251618 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773574_at SPBC1D7.02c.S1 --- 2.80236630738996 --- --- --- --- 6.70048522949219 18.777214050293 16.086576461792 9.06779861450195 0.0239257998764515 0.014160200022161 0.014160200022161 0.00585938012227416 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1D7.02c /GEN=scr1 /DEF=transcription factor --- --- --- --- --- --- SPBC1D7.02c // |scr1||transcription factor|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.76074471161838 2.80236630738996 1.86343376457166 2.40080768941732 1.35330476882331 Max fold change below threshold 4 2.80236630738996 Max fold change at or above threshold PPPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1775362_at YMR040W.S1 Endoplasmic reticulum transmembrane protein, homolog of human BAP31 protein 2.80230174661431 2318.93518066406 939.868621826172 --- --- 16021 // integral to membrane // inferred from sequence similarity --- 914.429565429688 2562.50756835938 2075.36279296875 965.307678222656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR040W /GEN=SUB1 /DB_XREF=GI:6323683 /SEG=NC_001145:+350380,350862 /DEF=Endoplasmic reticulum transmembrane protein, homolog of human BAP31 protein /NOTE=Ymr040wp --- --- --- --- --- S0004643 // span:4-26,47-66,105-124 // numtm:3 S0004643 // YET2 SGDID:S0004643, Chr XIII from 350380-350862, Uncharacterized ORF // sgd // 11 // --- /// YMR040W // cdna:known chromosome:SGD1:XIII:350380:350862:1 gene:YMR040W // ensembl // 11 // --- --- No cerevisiae_gene 1.56328928807569 2.80230174661431 1.20142178481478 2.26957096689404 1.05563918175487 Max fold change below threshold 4 2.80230174661431 Max fold change at or above threshold -0.87093065006583 1.13664583163638 0.543239213430304 -0.808954395000848 1629.40190124512 820.929124220611 0.503822367945743 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777764_at SPCC1393.04.S1 --- 2.80206403513978 --- --- --- --- 3.42771911621094 3.79861783981323 4.32690238952637 1.22328364849091 0.239501953125 0.303710997104645 0.219482004642487 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1393.04 /DEF=sequence orphan --- --- --- --- --- --- SPCC1393.04 // |fta4|sma6|kinetochore associated protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.17045180890129 1.1082056933569 -2.08488881177228 1.26232700020922 -2.80206403513978 Max fold change below threshold 3 2.80206403513978 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773741_at YIL064W.S1 Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family 2.80193636203627 331.985778808594 167.67781829834 --- --- 5737 // cytoplasm // inferred from direct assay 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from sequence similarity 162.894943237305 292.361114501953 371.610443115234 172.460693359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL064W /GEN=FIS1 /DB_XREF=GI:6322125 /SEG=NC_001141:+241940,242713 /DEF=Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family /NOTE=Yil064wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: S-adenosylmethionine-dependent methyltransferase activity [goid GO:0008757] [evidence ISS] [pmid 12872006]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001326 // YIL064W SGDID:S0001326, Chr IX from 241940-242713, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000019098 // cdna:GeneFinder chromosome:SGD1:IX:241964:242713:1 // ensembl // 11 // --- /// GENSCAN00000016429 // cdna:Genscan chromosome:SGD1:IX:241991:242713:1 // ensembl // 11 // --- /// YIL064W // cdna:known chromosome:SGD1:IX:241940:242713:1 gene:YIL064W // ensembl // 11 // --- --- No cerevisiae_gene 2.80193636203627 1.79478324306263 -1.01224241136998 2.28128900584639 1.05872343199835 Max fold change below threshold 4 2.80193636203627 Max fold change at or above threshold -0.866727817965899 0.424001317709972 1.21408737976566 -0.771360879509733 249.831798553467 100.304678717007 0.401488838881896 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771028_at SPAC30D11.02c.S1 --- 2.80073735700999 --- --- --- --- 1.92763638496399 5.39880323410034 1.17024171352386 2.80444073677063 0.601073980331421 0.014160200022161 0.590576171875 0.334473013877869 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30D11.02c /DEF=dubious --- --- --- --- --- --- SPAC30D11.02c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.15965740901187 2.80073735700999 1.8685350929173 -1.6472121636815 1.45485982659692 Max fold change below threshold 2 2.80073735700999 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1769448_at YHR152W.S1 Nucleolar protein of unknown function, positive regulator of exit from mitosis; involved in regulating the release of Cdc14p from the nucleolus in early anaphase; proposed to play similar role in meiosis 2.80066079627302 394.36979675293 791.616058349609 SPO12 278 // mitotic cell cycle // inferred from genetic interaction /// 278 // mitotic cell cycle // inferred from expression pattern /// 7096 // regulation of exit from mitosis // inferred from genetic interaction /// 7127 // meiosis I // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 708.489318847656 252.972198486328 535.767395019531 874.742797851563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR152W /GEN=SPO12 /DB_XREF=GI:6321946 /SEG=NC_001140:+401435,401956 /DEF=Nucleolar protein of unknown function, positive regulator of exit from mitosis; involved in regulating the release of Cdc14p from the nucleolus in early anaphase; proposed to play similar role in meiosis /NOTE=Spo12p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11729145]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11729145]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiosis I [goid GO:0007127] [evidence IMP] [pmid 7021311]; go_process: mitotic cell cycle [goid GO:0000278] [evidence IEP,IGI] [pmid 1333584]; go_process: regulation of exit from mitosis [goid GO:0007096] [evidence IGI] [pmid 11832211] --- --- --- --- --- --- S0001195 // SPO12 SGDID:S0001195, Chr VIII from 401436-401957, Verified ORF // sgd // 11 // --- /// GENSCAN00000016680 // cdna:Genscan chromosome:SGD1:VIII:401436:401957:1 // ensembl // 11 // --- /// YHR152W // cdna:known chromosome:SGD1:VIII:401436:401957:1 gene:YHR152W // ensembl // 11 // --- GENEFINDER00000020208 // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene 1.26981469240445 -2.80066079627302 -1.30584019211604 -1.32238229767944 1.23465911846676 Max fold change below threshold 4 2.80066079627302 Max fold change at or above threshold 0.434870203825528 -1.28025544429284 -0.215467156304822 1.06085239677214 592.99292755127 265.588192247644 0.447877503943219 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772888_at YLL048C.S1 Transporter of the ATP-binding cassette (ABC) family involved in bile acid transport; similar to mammalian bile transporters 2.79883229651255 632.121276855469 1554.70629882813 YBT1 15721 // bile acid transport // inferred from mutant phenotype 324 // vacuole (sensu Fungi) // inferred from direct assay 15125 // bile acid transporter activity // inferred from mutant phenotype /// 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from sequence similarity 1549.65539550781 553.679260253906 710.563293457031 1559.75720214844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL048C /GEN=YBT1 /DB_XREF=GI:6322980 /SEG=NC_001144:-41279,46264 /DEF=Yeast bile transporter, similar to mammalian bile transporter /NOTE=Ybt1p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 9182565]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence ISS] [pmid 9182565]; go_function: bile acid transporter activity [goid GO:0015125] [evidence IMP] [pmid 9182565]; go_process: bile acid transport [goid GO:0015721] [evidence IMP] [pmid 9182565] --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 0.140000000596046 S0003971 // span:28-50,139-161,171-193,205-227,242-260,341-363,394-416,512-534,604-626,1019-1041,1106-1128,1183-1200,1204-1226,1287-1309 // numtm:14 S0003971 // YBT1 SGDID:S0003971, Chr XII from 46264-41279, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017670 // cdna:Genscan chromosome:SGD1:XII:41279:44992:-1 // ensembl // 11 // --- /// GENEFINDER00000024794 // cdna:GeneFinder chromosome:SGD1:XII:41279:44992:-1 // ensembl // 11 // --- /// YLL048C // cdna:known chromosome:SGD1:XII:41279:46264:-1 gene:YLL048C // ensembl // 11 // --- --- No cerevisiae_gene -1.518809854288 -2.79883229651255 -1.30922228458197 -2.18088298365151 1.00651874388971 Max fold change below threshold 4 2.79883229651255 Max fold change at or above threshold 0.850392074066089 -1.00601513901498 -0.713597840500814 0.86922090544971 1093.4137878418 536.507361227544 0.490671845547616 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771326_at YOR190W.S1 Sporulation regulated genes; sporulation-specific exo-1,3-beta-glucanase 2.79857771456965 34.4786472320557 111.775527954102 SPR1 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype 9277 // cell wall (sensu Fungi) // inferred from mutant phenotype 4338 // glucan 1,3-beta-glucosidase activity // inferred from direct assay 83.2329406738281 29.7411575317383 39.216136932373 140.318115234375 0.000732421991415322 0.00292969006113708 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR190W /GEN=SPR1 /DB_XREF=GI:6324764 /SEG=NC_001147:+690695,692032 /DEF=Sporulation regulated genes /NOTE=Spr1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IMP] [pmid 8419289]; go_function: glucan 1,3-beta-glucosidase activity [goid GO:0004338] [evidence IDA] [pmid 7875558]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 8419289] --- --- --- --- --- --- S0005716 // SPR1 SGDID:S0005716, Chr XV from 690695-692032, Verified ORF // sgd // 11 // --- /// GENSCAN00000017607 // cdna:Genscan chromosome:SGD1:XV:690695:692032:1 // ensembl // 11 // --- /// GENEFINDER00000022639 // cdna:GeneFinder chromosome:SGD1:XV:690695:692032:1 // ensembl // 11 // --- /// YOR190W // cdna:known chromosome:SGD1:XV:690695:692032:1 gene:YOR190W // ensembl // 11 // --- --- No cerevisiae_gene -1.07748376145903 -2.79857771456965 -1.07753207753208 -2.12241559685903 1.6858483443983 Max fold change below threshold 4 2.79857771456965 Max fold change at or above threshold 0.200138087356512 -0.859222570452809 -0.671578416136176 1.33066289923247 73.1270875930786 50.4944022111477 0.690502026993441 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769606_at YDR072C.S1 Inositolphosphotransferase 1, involved in synthesis of mannose-(inositol-P)2-ceramide (M(IP)2C), which is the most abundant sphingolipid in cells, mutation confers resistance to the antifungals syringomycin E and DmAMP1 in some growth media 2.79856102624334 3331.67761230469 1323.2041015625 IPT1 6676 // mannosyl diphosphorylinositol ceramide metabolism // inferred from direct assay /// 30148 // sphingolipid biosynthesis // inferred from genetic interaction 5624 // membrane fraction // inferred from direct assay 16772 // transferase activity, transferring phosphorus-containing groups // inferred from direct assay 1301.45104980469 3642.19018554688 3021.1650390625 1344.95715332031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR072C /GEN=IPT1 /DB_XREF=GI:6320277 /SEG=NC_001136:-589757,591340 /DEF=Inositolphosphotransferase 1, involved in synthesis of mannose-(inositol-P)2-ceramide (M(IP)2C), which is the most abundant sphingolipid in cells, mutation confers resistance to the antifungals syringomycin E and DmAMP1 in some growth media /NOTE=Ipt1p; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 9368028]; go_function: transferase activity, transferring phosphorus-containing groups [goid GO:0016772] [evidence IDA] [pmid 9368028]; go_process: mannosyl diphosphorylinositol ceramide metabolism [goid GO:0006676] [evidence IDA] [pmid 9368028] --- --- --- --- --- S0002479 // span:23-45,95-117,152-174,189-211,224-246,289-311,435-454,464-483 // numtm:8 S0002479 // IPT1 SGDID:S0002479, Chr IV from 591341-589758, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023929 // cdna:GeneFinder chromosome:SGD1:IV:589758:590624:-1 // ensembl // 11 // --- /// GENSCAN00000025150 // cdna:Genscan chromosome:SGD1:IV:589758:591341:-1 // ensembl // 11 // --- /// YDR072C // cdna:known chromosome:SGD1:IV:589758:591341:-1 gene:YDR072C // ensembl // 11 // --- --- No cerevisiae_gene 1.47371740921318 2.79856102624334 1.2325117500026 2.32138199858988 1.0334289203748 Max fold change below threshold 4 2.79856102624334 Max fold change at or above threshold -0.864269345103058 1.10751347949066 0.584376706673631 -0.827620841061233 2327.44085693359 1187.11812809531 0.510052972800067 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777731_at YIR005W.S1 Component of the U2 snRNP, required for the first catalytic step of splicing and for spliceosomal assembly; interacts with Rds3p and is required for Mer1p-activated splicing 2.79804452929132 577.384948730469 252.252510070801 IST3 245 // spliceosome assembly // inferred from mutant phenotype 5686 // snRNP U2 // inferred from direct assay 31202 // RNA splicing factor activity, transesterification mechanism // inferred from direct assay 241.03239440918 674.419372558594 480.350524902344 263.472625732422 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR005W /GEN=IST3 /DB_XREF=GI:6322195 /SEG=NC_001141:+364886,365332 /DEF=U2 snRNP associated protein /NOTE=Ist3p; go_component: snRNP U2 [goid GO:0005686] [evidence IDA] [pmid 11804584]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IDA] [pmid 11287609]; go_process: spliceosome assembly [goid GO:0000245] [evidence IMP] [pmid 11287609] --- --- --- --- --- --- S0001444 // IST3 SGDID:S0001444, Chr IX from 364886-365332, Verified ORF // sgd // 10 // --- /// GENSCAN00000016480 // cdna:Genscan chromosome:SGD1:IX:364886:365332:1 // ensembl // 10 // --- /// GENEFINDER00000019021 // cdna:GeneFinder chromosome:SGD1:IX:364886:365332:1 // ensembl // 10 // --- /// YIR005W // cdna:known chromosome:SGD1:IX:364886:365332:1 gene:YIR005W // ensembl // 10 // --- --- No cerevisiae_gene -1.17695148512432 2.79804452929132 1.20138204524997 1.99288782771205 1.09310047878937 Max fold change below threshold 4 2.79804452929132 Max fold change at or above threshold -0.852077260643956 1.27282622591885 0.321303471869187 -0.742052437144082 414.818729400635 203.956076541834 0.491675187464479 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773643_at YDL030W.S1 Subunit of the SF3a splicing factor complex, required for spliceosome assembly; acts after the formation of the U1 snRNP-pre-mRNA complex 2.79622360181116 106.971168518066 269.045043945313 PRP9 398 // nuclear mRNA splicing, via spliceosome // inferred from direct assay 5686 // snRNP U2 // inferred from direct assay 3723 // RNA binding // inferred from direct assay 255.050720214844 91.2125625610352 122.729774475098 283.039367675781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL030W /GEN=PRP9 /DB_XREF=GI:6320174 /SEG=NC_001136:+397534,399126 /DEF=Subunit of the SF3a splicing factor complex, required for spliceosome assembly /NOTE=Prp9p; go_component: snRNP U2 [goid GO:0005686] [evidence IDA] [pmid 11804584]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 8065365]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IDA] [pmid 8969185] --- --- --- --- --- --- S0002188 // PRP9 SGDID:S0002188, Chr IV from 397534-399126, Verified ORF // sgd // 11 // --- /// GENSCAN00000025077 // cdna:Genscan chromosome:SGD1:IV:397573:399126:1 // ensembl // 11 // --- /// GENEFINDER00000023586 // cdna:GeneFinder chromosome:SGD1:IV:398197:399126:1 // ensembl // 11 // --- /// YDL030W // cdna:known chromosome:SGD1:IV:397534:399126:1 gene:YDL030W // ensembl // 11 // --- --- No cerevisiae_gene -2.26085147582235 -2.79622360181116 1.20571900551146 -2.07814869134787 1.10973757469636 Max fold change below threshold 4 2.79622360181116 Max fold change at or above threshold 0.704654683121918 -1.01737431016632 -0.686111108230754 0.998830735275159 188.008106231689 95.1425082227896 0.506055351174815 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775393_at YGR271C-A.S1 Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 2.79602678842981 36.6579732894897 69.8417301177979 --- --- 5730 // nucleolus // inferred from direct assay --- 76.5392761230469 45.9416465759277 27.3743000030518 63.1441841125488 0.000732421991415322 0.00292969006113708 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR271C-A /GEN=SLH1 /DB_XREF=GI:13129169 /SEG=NC_001139:-1037805,1037996 /DEF=Hypothetical ORF identified by homology. See FEBS Letters [2000] 487:31-36. /NOTE=Ygr271c-ap; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007608 // YGR271C-A SGDID:S0007608, Chr VII from 1037997-1037806, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000021574 // cdna:GeneFinder chromosome:SGD1:VII:1037806:1037997:-1 // ensembl // 11 // --- /// YGR271C-A // cdna:known chromosome:SGD1:VII:1037806:1037997:-1 gene:YGR271C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.0621468605552 -1.66601072942718 -1.15645249419593 -2.79602678842981 -1.21213500813666 Max fold change below threshold 4 2.79602678842981 Max fold change at or above threshold 1.09252596273215 -0.342833884565649 -1.21384331032941 0.46415123216291 53.2498517036438 21.3170443667642 0.400321196862705 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775009_at SPBC29A3.04.S1 --- 2.79595937366169 --- --- --- --- 1.18434202671051 1.662801861763 0.949299037456512 0.719170391559601 0.725830018520355 0.665526986122131 0.805419981479645 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A3.04 /GEN=rpl701 /DEF=60S ribosomal protein L7a (L8) --- --- --- --- --- --- AB005750 // Schizosaccharomyces pombe mRNA for ribosomal protein L4, partial cds. // gb // 11 // --- /// SPBC29A3.04 // |rpl701|rpl7a|60S ribosomal protein L7a |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.29095838230591 1.40398788885454 -2.79595937366169 -1.24759636319 -1.64681699999097 Max fold change below threshold 0 2.79595937366169 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773844_at SPAC8F11.09c.S1 --- 2.79369459329844 --- --- --- --- 4.17499399185181 11.6636581420898 11.3206434249878 8.06662654876709 0.432372987270355 0.030273400247097 0.149657994508743 0.00585938012227416 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8F11.09c /DEF=methyltransferase (predicted) --- --- --- --- --- --- SPAC8F11.09c // |||methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.2390659369087 2.79369459329844 2.19903131676801 2.71153526138766 1.93212889994823 Max fold change below threshold 4 2.79369459329844 Max fold change at or above threshold AAPPAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1778367_at YDR377W.S1 Subunit f of the F0 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis 2.79321772800718 3410.30615234375 1425.45233154297 ATP17 15986 // ATP synthesis coupled proton transport // inferred from mutant phenotype /// 15986 // ATP synthesis coupled proton transport // inferred from physical interaction 276 // proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota) // inferred from mutant phenotype /// 276 // proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota) // inferred from physical interaction 46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // inferred from mutant phenotype /// 46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // inferred from physical interaction 1390.53784179688 3884.07495117188 2936.53735351563 1460.36682128906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR377W /GEN=ATP17 /DB_XREF=GI:6320585 /SEG=NC_001136:+1228599,1228904 /DEF=Subunit f of the F0 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis /NOTE=Atp17p; go_component: proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukarya) [goid GO:0000276] [evidence IMP,IPI] [pmid 9288937]; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism [goid GO:0046933] [evidence IMP,IPI] [pmid 9288937]; go_process: ATP synthesis coupled proton transport [goid GO:0015986] [evidence IMP,IPI] [pmid 9288937] --- --- --- --- --- --- S0002785 // ATP17 SGDID:S0002785, Chr IV from 1228601-1228906, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023538 // cdna:GeneFinder chromosome:SGD1:IV:1228601:1228906:1 // ensembl // 11 // --- /// YDR377W // cdna:known chromosome:SGD1:IV:1228601:1228906:1 gene:YDR377W // ensembl // 11 // --- --- No cerevisiae_gene -1.04420589818978 2.79321772800718 1.19789451340261 2.11179966862389 1.0502172450064 Max fold change below threshold 4 2.79321772800718 Max fold change at or above threshold -0.849168494079363 1.21191183598137 0.428706686485202 -0.791450028387213 2417.87924194336 1209.82043882856 0.500364293568348 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774390_at YPR101W.S1 Component of a protein complex associated with the splicing factor Prp19p, essential for mRNA splicing 2.7916211538029 515.165390014648 437.498458862305 SNT309 398 // nuclear mRNA splicing, via spliceosome // inferred from genetic interaction /// 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 5681 // spliceosome complex // inferred from direct assay --- 421.956695556641 489.661041259766 540.669738769531 453.040222167969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR101W /GEN=SNT309 /DB_XREF=GI:6325358 /SEG=NC_001148:+730488,731015 /DEF=Synergistic to prp19 (NineTeen) mutation. Essential for mRNA splicing. /NOTE=Snt309p; go_component: spliceosome complex [goid GO:0005681] [evidence IDA] [pmid 12088152]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IGI,IPI] [pmid 12088152] --- --- --- --- --- --- S0006305 // SNT309 SGDID:S0006305, Chr XVI from 730490-731017, Verified ORF // sgd // 11 // --- /// GENSCAN00000017258 // cdna:Genscan chromosome:SGD1:XVI:730490:731017:1 // ensembl // 11 // --- /// YPR101W // cdna:known chromosome:SGD1:XVI:730490:731017:1 gene:YPR101W // ensembl // 11 // --- --- No cerevisiae_gene 2.7916211538029 1.16045330342207 -1.00009055779479 1.28133939919187 1.07366520531289 Max fold change below threshold 4 2.7916211538029 Max fold change at or above threshold -1.06528107033107 0.261134640275398 1.26046100628447 -0.456314576228803 476.331924438477 51.0430818647113 0.107158641371526 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771691_at YHL048C-A.S1 Identified by expression profiling and mass spectrometry 2.79092532872408 83.9971961975098 26.5514965057373 --- --- --- --- 31.2100200653076 87.1048355102539 80.8895568847656 21.892972946167 0.018554700538516 0.000732421991415322 0.000244141003349796 0.00537109375 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL048C-A /DB_XREF=GI:33438802 /SEG=NC_001140:-5662,5796 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Yhl048c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028829 // YHL048C-A SGDID:S0028829, Chr VIII from 5796-5662, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YHL048C-A // cdna:known chromosome:SGD1:VIII:5662:5796:-1 gene:YHL048C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.49359493652168 2.79092532872408 -2.18763888709702 2.59178163665075 -1.42557249497592 Max fold change below threshold 4 2.79092532872408 Max fold change at or above threshold -0.718767668046601 0.950732058447082 0.76509040487449 -0.997054795274971 55.2743463516235 33.4799787972039 0.605705557949498 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1775563_at YOR222W.S1 Mitochondrial inner membrane transporter, exports 2-oxoadipate and 2-oxoglutarate from the mitochondrial matrix to the cytosol for use in lysine and glutamate biosynthesis and in lysine catabolism 2.79065438832585 1508.84039306641 1020.76623535156 ODC2 6839 // mitochondrial transport // inferred from direct assay 5743 // mitochondrial inner membrane // inferred from direct assay 5342 // organic acid transporter activity // inferred from direct assay /// 5478 // intracellular transporter activity // inferred from direct assay 984.01171875 1238.41809082031 1779.2626953125 1057.52075195313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR222W /GEN=ODC2 /DB_XREF=GI:6324796 /SEG=NC_001147:+758330,759253 /DEF=Mitochondrial inner membrane transporter, exports 2-oxoadipate and 2-oxoglutarate from the mitochondrial matrix to the cytosol for use in lysine and glutamate biosynthesis and in lysine catabolism /NOTE=Odc2p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 11013234]; go_function: intracellular transporter activity [goid GO:0005478] [evidence IDA] [pmid 11013234]; go_function: organic acid transporter activity [goid GO:0005342] [evidence IDA] [pmid 11013234]; go_process: mitochondrial transport [goid GO:0006839] [evidence IDA] [pmid 11013234] --- --- --- --- --- --- S0005748 // ODC2 SGDID:S0005748, Chr XV from 758330-759253, Verified ORF // sgd // 11 // --- /// GENSCAN00000017637 // cdna:Genscan chromosome:SGD1:XV:758330:759253:1 // ensembl // 11 // --- /// GENEFINDER00000022836 // cdna:GeneFinder chromosome:SGD1:XV:758330:759253:1 // ensembl // 11 // --- /// YOR222W // cdna:known chromosome:SGD1:XV:758330:759253:1 gene:YOR222W // ensembl // 11 // --- --- No cerevisiae_gene 2.79065438832585 1.25853998201717 1.02767954790855 1.80817226198557 1.07470341237044 Max fold change below threshold 4 2.79065438832585 Max fold change at or above threshold -0.781612136016663 -0.073445968987733 1.43205032579711 -0.576992220792715 1264.80331420898 359.246719082415 0.284033663611239 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777730_s_at SPAC513.01c.S1 --- 2.79041161699847 --- --- --- --- 8.57576370239258 23.92991065979 15.3851661682129 8.8086404800415 0.129638999700546 0.129638999700546 0.171387001872063 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC513.01c /GEN=eft201 /DEF=translation elongation factor 2 (PMID 9099890) --- --- --- --- --- --- D89151 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0630. // gb // 11 // --- /// SPAC513.01c // |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elongation factor 2 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPCP31B10.07 // |eft202||translation elongation factor 2 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.28818357583633 2.79041161699847 -1.0288547844458 1.7940286955342 1.02715522322332 Max fold change below threshold 4 2.79041161699847 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779359_at SPBC18H10.20c.S1 --- 2.79040108105155 --- --- --- --- 1.97273910045624 2.19323515892029 1.15440213680267 1.71200180053711 0.850341975688934 0.805419981479645 0.870360970497131 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18H10.20c /DEF=conserved yeast protein --- --- --- --- --- --- SPBC18H10.20c // |||conserved yeast protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.79040108105155 1.11177152539485 2.17436359170162 -1.70888379150103 -1.15229966454318 Max fold change below threshold 0 2.79040108105155 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777079_at YGR143W.S1 Protein involved in sphingolipid biosynthesis; type II membrane protein with similarity to Kre6p 2.78932396303038 1024.0964050293 1350.53430175781 SKN1 6078 // beta-1,6 glucan biosynthesis // inferred from sequence similarity /// 6078 // beta-1,6 glucan biosynthesis // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 30148 // sphingolipid biosynthesis // inferred from genetic interaction /// 30148 // sphingolipid biosynthesis // inferred from mutant phenotype 16021 // integral to membrane // inferred from direct assay 15926 // glucosidase activity // inferred from mutant phenotype /// 15926 // glucosidase activity // inferred from sequence similarity 1331.11633300781 792.216247558594 1255.9765625 1369.95227050781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR143W /GEN=SKN1 /DB_XREF=GI:6321582 /SEG=NC_001139:+775196,777511 /DEF=Involved in (1->6)-beta-glucan biosynthesis /NOTE=Skn1p; go_component: integral to membrane [goid GO:0016021] [evidence IDA] [pmid 7929594]; go_function: glucosidase activity [goid GO:0015926] [evidence IMP,ISS] [pmid 10601196]; go_process: beta-1,6 glucan biosynthesis [goid GO:0006078] [evidence IMP,ISS] [pmid 7929594]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 7929594] --- --- --- --- --- S0003375 // span:290-312 // numtm:1 S0003375 // SKN1 SGDID:S0003375, Chr VII from 775198-777513, Verified ORF // sgd // 11 // --- /// GENSCAN00000019450 // cdna:Genscan chromosome:SGD1:VII:775198:777513:1 // ensembl // 11 // --- /// GENEFINDER00000021683 // cdna:GeneFinder chromosome:SGD1:VII:775837:777513:1 // ensembl // 11 // --- /// YGR143W // cdna:known chromosome:SGD1:VII:775198:777513:1 gene:YGR143W // ensembl // 11 // --- --- No cerevisiae_gene -2.78932396303038 -1.68024366719311 -1.23796139996233 -1.05982577442229 1.02917546463595 Max fold change below threshold 4 2.78932396303038 Max fold change at or above threshold 0.537343666735111 -1.47637382459161 0.256567555817022 0.682462602039475 1187.31535339355 267.61454264082 0.225394661894947 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769887_at YHR133C.S1 Protein of unknown function, potential homolog of mammalian Insig 1; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery 2.78880926329198 292.013641357422 751.631805419922 --- --- --- --- 749.357849121094 268.701721191406 315.325561523438 753.90576171875 0.000244141003349796 0.00415039015933871 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR133C /GEN=ECM14 /DB_XREF=GI:6321925 /SEG=NC_001140:-370723,371598 /DEF=Protein of unknown function, potential homolog of mammalian Insig 1; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery /NOTE=Yhr133cp --- --- --- --- --- S0001175 // span:95-117,157-179,192-211,231-253,265-282 // numtm:5 S0001175 // NSG1 SGDID:S0001175, Chr VIII from 371599-370724, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YHR133C // cdna:known chromosome:SGD1:VIII:370724:371599:-1 gene:YHR133C // ensembl // 11 // --- --- No cerevisiae_gene 1.49247675357457 -2.78880926329198 1.03999990551806 -2.37645766965643 1.00606907981679 Max fold change below threshold 4 2.78880926329198 Max fold change at or above threshold 0.855237910351286 -0.951407727876656 -0.776162364551917 0.872332182077287 521.822723388672 266.04892390582 0.509845416807688 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777222_at YBR148W.S1 Protein expressed specifically in spores 2.78823943151913 123.159633636475 304.376083374023 YSW1 --- --- --- 288.712097167969 142.772888183594 103.546379089355 320.040069580078 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR148W /GEN=YSW1 /DB_XREF=GI:6319624 /SEG=NC_001134:+537832,539661 /DEF=Protein expressed specifically in spores /NOTE=Ysw1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000352 // YSW1 SGDID:S0000352, Chr II from 537870-539699, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022280 // cdna:GeneFinder chromosome:SGD1:II:537870:539699:1 // ensembl // 11 // --- /// YBR148W // cdna:known chromosome:SGD1:II:537870:539699:1 gene:YBR148W // ensembl // 11 // --- GENSCAN00000021258 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene -1.64490140216689 -2.02217732540866 -1.26590065137459 -2.78823943151913 1.1085093860611 Max fold change below threshold 4 2.78823943151913 Max fold change at or above threshold 0.702950894646661 -0.665908131078873 -1.03383914423862 0.99679638067083 213.767858505249 106.613760980261 0.498736160458113 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774329_at SPAC926.07c.S1 --- 2.7877893930793 --- --- --- --- 7.40222215652466 3.69975280761719 5.57074451446533 2.6552300453186 0.111571997404099 0.334473013877869 0.0805663987994194 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC926.07c /DEF=dynein light chain (predicted) --- --- --- --- --- --- AF197476 // Schizosaccharomyces pombe 8kDa dynein light chain Dlc2 (dlc2) mRNA, complete cds. // gb // 11 // --- /// SPAC926.07c // |||dynein light chain |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.82597243512473 -2.00073424940301 -1.64608335889723 -1.32876712211511 -2.7877893930793 Max fold change below threshold 4 2.7877893930793 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779800_at YPL145C.S1 Member of the oxysterol binding protein family, which includes seven yeast homologs; involved in negative regulation of Sec14p-dependent Golgi complex secretory functions, peripheral membrane protein that localizes to the Golgi complex 2.78774672985758 335.739570617676 692.427459716797 KES1 6694 // steroid biosynthesis // inferred from mutant phenotype /// 6694 // steroid biosynthesis // inferred from genetic interaction /// 16192 // vesicle-mediated transport // inferred from genetic interaction 139 // Golgi membrane // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 19898 // extrinsic to membrane // inferred from direct assay 8142 // oxysterol binding // inferred from sequence similarity 666.8330078125 239.201431274414 432.277709960938 718.021911621094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL145C /GEN=KES1 /DB_XREF=GI:6325112 /SEG=NC_001148:-278394,279698 /DEF=Member of the oxysterol binding protein family, which includes seven yeast homologs; involved in negative regulation of Sec14p-dependent Golgi complex secretory functions, peripheral membrane protein that localizes to the Golgi complex /NOTE=Kes1p; go_component: Golgi membrane [goid GO:0000139] [evidence IDA] [pmid 11916983]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: extrinsic to membrane [goid GO:0019898] [evidence IDA] [pmid 11916983]; go_function: oxysterol binding [goid GO:0008142] [evidence ISS] [pmid 11238399]; go_process: steroid biosynthesis [goid GO:0006694] [evidence IGI,IMP] [pmid 11238399]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IGI] [pmid 8978672] --- --- --- --- --- --- S0006066 // KES1 SGDID:S0006066, Chr XVI from 279698-278394, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017078 // cdna:Genscan chromosome:SGD1:XVI:278394:279698:-1 // ensembl // 11 // --- /// GENEFINDER00000020963 // cdna:GeneFinder chromosome:SGD1:XVI:278394:279698:-1 // ensembl // 11 // --- /// YPL145C // cdna:known chromosome:SGD1:XVI:278394:279698:-1 gene:YPL145C // ensembl // 11 // --- --- No cerevisiae_gene 1.52777227581399 -2.78774672985758 -1.01436804260174 -1.54260326740594 1.07676420214487 Max fold change below threshold 4 2.78774672985758 Max fold change at or above threshold 0.689640021372274 -1.24104953101839 -0.369340390425168 0.920749900071282 514.083515167236 221.491630287518 0.430847564165648 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778642_at SPAC3H1.06c.S1 --- 2.78717478339639 --- --- --- --- 1.41471529006958 1.85893714427948 2.03097057342529 0.919317603111267 0.5 0.533936023712158 0.334473013877869 0.32666015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H1.06c /DEF=transporter (predicted) --- --- --- --- --- --- SPAC3H1.06c // |||membrane transporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.78717478339639 1.31400088578109 1.31580455246989 1.43560374845839 -1.53887544987905 Max fold change below threshold 0 2.78717478339639 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772290_at SPBP35G2.06c.S1 --- 2.7866005708703 --- --- --- --- 0.840710401535034 1.05629801750183 0.495469093322754 1.93700456619263 0.696289002895355 0.432372987270355 0.60107421875 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP35G2.06c /GEN=nup131 /DEF=nucleoporin (PMID 11564755) --- --- --- --- --- --- SPBP35G2.06c // |nup131|Nup133a|nucleoporin |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.7866005708703 1.25643505251411 -1.25014901423703 -1.69679685951145 2.30400927912381 Max fold change below threshold 0 2.7866005708703 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775775_at YIL103W.S1 Protein required, along with Dph2p, Kti11p, Jjj3p, and Dph5p, for synthesis of diphthamide, which is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); may act in a complex with Dph2p and Kti11p 2.78544340698527 235.407325744629 687.009948730469 DPH1 17183 // peptidyl-diphthamide biosynthesis from peptidyl-histidine // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 646.609558105469 232.138824462891 238.675827026367 727.410339355469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL103W /GEN=SHQ1 /DB_XREF=GI:6322088 /SEG=NC_001141:+171748,173025 /DEF=Hypothetical ORF /NOTE=Yil103wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001365 // YIL103W SGDID:S0001365, Chr IX from 171748-173025, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016400 // cdna:Genscan chromosome:SGD1:IX:171748:173025:1 // ensembl // 11 // --- /// GENEFINDER00000019105 // cdna:GeneFinder chromosome:SGD1:IX:171748:173025:1 // ensembl // 11 // --- /// YIL103W // cdna:known chromosome:SGD1:IX:171748:173025:1 gene:YIL103W // ensembl // 11 // --- --- No cerevisiae_gene 1.10879955174843 -2.78544340698527 -1.31434962896538 -2.70915394391421 1.1249606972819 Max fold change below threshold 4 2.78544340698527 Max fold change at or above threshold 0.705416298760501 -0.87156837586787 -0.846696287143992 1.01284836425136 461.208637237549 262.824832930131 0.569861038388925 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774488_at YOL107W.S1 Hypothetical protein 2.78543578332154 750.965393066406 353.368209838867 --- --- 5794 // Golgi apparatus // inferred from direct assay /// 30137 // COPI-coated vesicle // inferred from direct assay --- 365.73095703125 718.831481933594 783.099304199219 341.005462646484 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL107W /GEN=INO4 /DB_XREF=GI:6324465 /SEG=NC_001147:+112101,113129 /DEF=Hypothetical ORF /NOTE=Yol107wp; go_component: COPI-coated vesicle [goid GO:0030137] [evidence IDA] [pmid 14562095]; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005467 // span:122-144,209-231 // numtm:2 S0005467 // YOL107W SGDID:S0005467, Chr XV from 112101-113129, Uncharacterized ORF // sgd // 11 // --- /// YOL107W // cdna:known chromosome:SGD1:XV:112101:113129:1 gene:YOL107W // ensembl // 11 // --- --- No cerevisiae_gene -2.78543578332154 1.96546523643656 -1.60739330488403 2.14118955244006 -1.07250761965182 Max fold change below threshold 4 2.78543578332154 Max fold change at or above threshold -0.806147041384486 0.720656692869312 0.998550222069399 -0.913059873554226 552.166801452637 231.267789684125 0.418836824444547 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769860_at YCR020W-B.S1 Subunit of the RSC chromatin remodeling complex, a multisubunit complex that functions in transcriptional regulation, chromosome stability and establishing sister chromatid cohesion 2.78538850013954 26.2991342544556 77.1054077148438 HTL1 67 // DNA replication and chromosome cycle // inferred from mutant phenotype /// 74 // regulation of cell cycle // inferred from genetic interaction /// 74 // regulation of cell cycle // inferred from physical interaction 16586 // RSC complex // inferred from direct assay --- 64.249885559082 29.5315093994141 23.0667591094971 89.9609298706055 0.000244141003349796 0.0029296875 0.001220703125 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR020W-B /GEN=HTL1 /DB_XREF=GI:6319868 /SEG=NC_001135:+155317,155553 /DEF=High-Temperature Lethal /NOTE=Htl1p; go_component: RSC complex [goid GO:0016586] [evidence IDA] [pmid 12417720]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 11571756]; go_process: DNA replication and chromosome cycle [goid GO:0000067] [evidence IMP] [pmid 11571756]; go_process: regulation of cell cycle [goid GO:0000074] [evidence IGI,IPI] [pmid 12417720] --- --- --- --- --- --- S0006439 // HTL1 SGDID:S0006439, Chr III from 155317-155553, Verified ORF // sgd // 11 // --- /// YCR020W-B // cdna:known chromosome:SGD1:III:155317:155553:1 gene:YCR020W-B // ensembl // 11 // --- --- No cerevisiae_gene 1.17594317593083 -2.17563838983309 -1.13429254010699 -2.78538850013954 1.40017260867929 Max fold change below threshold 4 2.78538850013954 Max fold change at or above threshold 0.401317195740688 -0.709099551475872 -0.91586518347096 1.22364753920614 51.7022709846497 31.2660775755546 0.604733157366288 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777844_at SPBC1778.08c.S1 --- 2.78498952938033 --- --- --- --- 18.0326595306396 23.7092380523682 16.973949432373 21.913444519043 0.018554700538516 0.000732421991415322 0.014160200022161 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1778.08c /GEN=arc2 /DEF=ARP23 actin-organizing complex --- --- --- --- --- --- SPBC1778.08c // |arc3|arc21|ARP2/3 actin-organizing complex Arc21p subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.78498952938033 1.31479430486021 -1.1960604409656 -1.06237264359038 1.2152086874268 Max fold change below threshold 4 2.78498952938033 Max fold change at or above threshold PAPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1778528_at SPAC6G9.16c.S1 --- 2.78456794045536 --- --- --- --- 0.363982439041138 0.6491779088974 0.533166408538818 1.0135338306427 0.888427972793579 0.953857004642487 0.943848013877869 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G9.16c /DEF=sequence orphan --- --- --- --- --- --- SPAC6G9.16c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.36957138012764 1.78354183956669 1.5481432257363 1.46481354964095 2.78456794045536 Max fold change below threshold 0 2.78456794045536 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773231_at YJL033W.S1 Putative nucleolar DEAD box RNA helicase; high-copy number suppression of a U14 snoRNA processing mutant suggests an involvement in 18S rRNA synthesis 2.78443605135386 141.228813171387 173.634338378906 HCA4 6365 // 35S primary transcript processing // traceable author statement 5730 // nucleolus // traceable author statement 4004 // ATP-dependent RNA helicase activity // traceable author statement 168.881744384766 134.163238525391 148.294387817383 178.386932373047 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL033W /GEN=HCA4 /DB_XREF=GI:6322427 /SEG=NC_001142:+383753,386065 /DEF=Putative nucleolar DEAD box RNA helicase; high-copy number suppression of a U14 snoRNA processing mutant suggests an involvement in 18S rRNA synthesis /NOTE=Hca4p; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 10690410]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0003570 // HCA4 SGDID:S0003570, Chr X from 383753-386065, Verified ORF // sgd // 11 // --- /// GENSCAN00000024114 // cdna:Genscan chromosome:SGD1:X:383753:386065:1 // ensembl // 11 // --- /// GENEFINDER00000024325 // cdna:GeneFinder chromosome:SGD1:X:384320:386065:1 // ensembl // 11 // --- /// YJL033W // cdna:known chromosome:SGD1:X:383753:386065:1 gene:YJL033W // ensembl // 11 // --- --- No cerevisiae_gene 2.78443605135386 -1.2587780843767 -1.13789668137963 -1.13882761762188 1.05628309929477 Max fold change below threshold 4 2.78443605135386 Max fold change at or above threshold 0.573672000615159 -1.16578139904786 -0.457787922120509 1.04989732055321 157.431575775146 19.9594343062602 0.126781645981665 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772316_at SPAC2C4.12c.S1 --- 2.78423421209399 --- --- --- --- 0.303168892860413 0.51204127073288 0.176312580704689 0.404412716627121 0.919434010982513 0.828612983226776 0.888427972793579 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2C4.12c /DEF=tRNA 2-phosphotransferase (predicted) --- --- --- --- --- --- SPAC2C4.12c // |||tRNA 2'-phosphotransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.43396692703777 1.68896375186038 2.78423421209399 -1.71949665559146 1.33395188672383 Max fold change below threshold 0 2.78423421209399 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779355_at YNR070W.S1 Putative transporter of the ATP-binding cassette (ABC) family, implicated in pleiotropic drug resistance 2.78306403884519 171.153251647949 83.1946792602539 --- 6810 // transport // inferred from sequence similarity 5739 // mitochondrion // inferred from direct assay /// 16020 // membrane // inferred from sequence similarity 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from sequence similarity 73.2088394165039 138.561614990234 203.744888305664 93.1805191040039 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR070W /GEN=BSC5 /DB_XREF=GI:6324398 /SEG=NC_001146:+765372,769373 /DEF=ABC transporter of the PDR family /NOTE=Ynr070wp; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 10581358]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence ISS] [pmid 10581358]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 10581358] --- --- --- --- --- S0005353 // span:426-445,473-495,500-522,529-551,642-659,1071-1093,1149-1171,1178-1200,1210-1232 // numtm:9 S0005353 // YNR070W SGDID:S0005353, Chr XIV from 765373-769374, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020096 // cdna:Genscan chromosome:SGD1:XIV:765373:769374:1 // ensembl // 11 // --- /// GENEFINDER00000020558 // cdna:GeneFinder chromosome:SGD1:XIV:765373:769374:1 // ensembl // 11 // --- /// YNR070W // cdna:known chromosome:SGD1:XIV:765373:769374:1 gene:YNR070W // ensembl // 11 // --- --- No cerevisiae_gene 1.40226534393941 1.89268968193747 2.64541990941917 2.78306403884519 1.2728042111674 Max fold change below threshold 4 2.78306403884519 Max fold change at or above threshold -0.931885261130678 0.196645195533322 1.32224863862695 -0.587008573029595 127.173965454102 57.9096250241371 0.455357547571616 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777210_at SPBC25H2.07.S1 --- 2.78290643595387 --- --- --- --- 1.52585208415985 0.703063905239105 1.08520710468292 1.21190595626831 0.466064006090164 0.725830018520355 0.601073980331421 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25H2.07 /GEN=tif11 /DEF=translation initiation factor --- --- --- --- --- --- AB000518 // Fission yeast mRNA for translation initiation factor eIF1A, partial cds. // gb // 11 // --- /// SPBC25H2.07 // |tif11||translation initiation factor eIF1A|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.53899408046928 -2.170289319064 -2.78290643595387 -1.40604689885962 -1.25905155946113 Max fold change below threshold 0 2.78290643595387 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774468_at YDR283C.S1 Protein kinase, phosphorylates the alpha-subunit of translation initiation factor eIF2 (Sui2p) in response to starvation; activated by uncharged tRNAs and the Gcn1p-Gcn20p complex 2.78277029496542 244.828742980957 605.845336914063 GCN2 6446 // regulation of translational initiation // inferred from direct assay /// 6468 // protein amino acid phosphorylation // inferred from direct assay /// 8652 // amino acid biosynthesis // inferred from mutant phenotype 5830 // cytosolic ribosome (sensu Eukaryota) // inferred from direct assay 4672 // protein kinase activity // inferred from direct assay /// 4694 // eukaryotic translation initiation factor 2alpha kinase activity // inferred from direct assay 580.309387207031 208.536575317383 281.120910644531 631.381286621094 0.000244141003349796 0.000244140625 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR283C /GEN=GCN2 /DB_XREF=GI:6320489 /SEG=NC_001136:-1025062,1030041 /DEF=Protein kinase, phosphorylates the alpha-subunit of translation initiation factor eIF2 (Sui2p) in response to starvation; activated by uncharged tRNAs and the Gcn1p-Gcn20p complex /NOTE=Gcn2p; go_component: cytosolic ribosome (sensu Eukarya) [goid GO:0005830] [evidence IDA] [pmid 2038314]; go_function: protein kinase activity [goid GO:0004672] [evidence IDA] [pmid 2188100]; go_process: amino acid biosynthesis [goid GO:0008652] [evidence IMP] [pmid 6351059]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 2188100]; go_process: regulation of translational initiation [goid GO:0006446] [evidence IDA] [pmid 7934812] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 5.0E-14 /// ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 3.0E-41 /// hanks // 2.1.22 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; RSK2C // 9.0E-49 --- --- S0002691 // GCN2 SGDID:S0002691, Chr IV from 1030043-1025064, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023614 // cdna:GeneFinder chromosome:SGD1:IV:1025064:1026917:-1 // ensembl // 11 // --- /// GENSCAN00000025318 // cdna:Genscan chromosome:SGD1:IV:1025064:1029215:-1 // ensembl // 11 // --- /// YDR283C // cdna:known chromosome:SGD1:IV:1025064:1030043:-1 gene:YDR283C // ensembl // 11 // --- --- No cerevisiae_gene -1.75377377310353 -2.78277029496542 -1.04033203391068 -2.06426973317831 1.08800805318671 Max fold change below threshold 4 2.78277029496542 Max fold change at or above threshold 0.732526078402569 -1.02477633564787 -0.681683393901218 0.97393365114652 425.33703994751 211.558812482788 0.497390992585307 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773436_x_at YLR037C.S1 Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth 2.78188280918816 1469.20043945313 1433.08483886719 DAN2 --- 9277 // cell wall (sensu Fungi) // inferred from sequence similarity --- 1350.60070800781 1454.96569824219 1483.43518066406 1515.56896972656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR037C /GEN=DAN2 /DB_XREF=GI:6323066 /SEG=NC_001144:-222686,223060 /DEF=Delayed anaerobic gene /NOTE=Dan2p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence ISS] [pmid 11292809]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004027 // span:7-29 // numtm:1 S0004027 // DAN2 SGDID:S0004027, Chr XII from 223060-222686, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017850 // cdna:Genscan chromosome:SGD1:XII:222686:223060:-1 // ensembl // 11 // --- /// GENEFINDER00000024768 // cdna:GeneFinder chromosome:SGD1:XII:222686:223060:-1 // ensembl // 11 // --- /// YLR037C // cdna:known chromosome:SGD1:XII:222686:223060:-1 gene:YLR037C // ensembl // 11 // --- --- No cerevisiae_gene -2.78188280918816 1.07727301608506 1.24804148472346 1.09835214202737 1.12214436194253 Max fold change below threshold 4 2.78188280918816 Max fold change at or above threshold -1.40709375390217 0.053504070326381 0.451937146292957 0.901652537282836 1451.14263916016 71.4536120095191 0.0492395510140014 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773673_at YPR176C.S1 Beta subunit of Type II geranylgeranyltransferase required for vesicular transport between the endoplasmic reticulum and the Golgi; provides a membrane attachment moiety to Rab-like proteins Ypt1p and Sec4p 2.78186288684184 417.698379516602 931.610595703125 BET2 18348 // protein amino acid geranylgeranylation // inferred from direct assay 5968 // Rab-protein geranylgeranyltransferase complex // inferred from direct assay 4663 // Rab-protein geranylgeranyltransferase activity // inferred from direct assay 904.278625488281 325.062255859375 510.334503173828 958.942565917969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR176C /GEN=BET2 /DB_XREF=GI:6325434 /SEG=NC_001148:-891095,892072 /DEF=Geranylgeranyltransferase Type II beta subunit /NOTE=Bet2p; go_component: Rab-protein geranylgeranyltransferase complex [goid GO:0005968] [evidence IDA] [pmid 8756702]; go_function: RAB-protein geranylgeranyltransferase activity [goid GO:0004663] [evidence IDA] [pmid 8756702]; go_process: protein amino acid geranylgeranylation [goid GO:0018348] [evidence IDA] [pmid 8756702] --- --- --- --- --- --- S0006380 // BET2 SGDID:S0006380, Chr XVI from 892074-891097, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017320 // cdna:Genscan chromosome:SGD1:XVI:891097:892074:-1 // ensembl // 11 // --- /// GENEFINDER00000020765 // cdna:GeneFinder chromosome:SGD1:XVI:891097:892074:-1 // ensembl // 11 // --- /// YPR176C // cdna:known chromosome:SGD1:XVI:891097:892074:-1 gene:YPR176C // ensembl // 11 // --- --- No cerevisiae_gene 1.50280921570974 -2.78186288684184 1.12201629879005 -1.77193315338169 1.06045032901244 Max fold change below threshold 4 2.78186288684184 Max fold change at or above threshold 0.7479405406484 -1.13870521295277 -0.535229349727593 0.925994022031966 674.654487609863 307.00854599933 0.455060407419784 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777372_at YGR150C.S1 Hypothetical protein 2.78032380222788 129.15641784668 354.683151245117 --- --- 5739 // mitochondrion // inferred from direct assay --- 335.818450927734 120.783935546875 137.528900146484 373.5478515625 0.000244141003349796 0.00292969006113708 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR150C /GEN=RPL24B /DB_XREF=GI:6321589 /SEG=NC_001139:-790462,793056 /DEF=Hypothetical ORF /NOTE=Ygr150cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003382 // YGR150C SGDID:S0003382, Chr VII from 793058-790464, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019456 // cdna:Genscan chromosome:SGD1:VII:790464:793058:-1 // ensembl // 11 // --- /// YGR150C // cdna:known chromosome:SGD1:VII:790464:793058:-1 gene:YGR150C // ensembl // 11 // --- --- No cerevisiae_gene -1.56529288700697 -2.78032380222788 -1.00783732091334 -2.44180278159753 1.11235058863065 Max fold change below threshold 4 2.78032380222788 Max fold change at or above threshold 0.715179243665648 -0.922631259911871 -0.795093227914078 1.0025452441603 241.919784545898 131.293892004693 0.542716637463703 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776779_at SPAC19A8.10.S1 --- 2.77991764117477 --- --- --- --- 3.6543755531311 10.158863067627 6.43997287750244 2.32176327705383 0.0676269978284836 0.432372987270355 0.111571997404099 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19A8.10 /DEF=zinc finger protein --- --- --- --- --- --- SPAC19A8.10 // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.45458371005121 2.77991764117477 1.5954753926293 1.7622635615501 -1.57396561020996 Max fold change below threshold 3 2.77991764117477 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-TagA_at AFFX-r2-TagA --- 2.77860058634339 --- --- --- --- 1.00642359256744 1.15660345554352 1.32817721366882 0.459521770477295 0.919434010982513 0.943848013877869 0.828612983226776 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Clone 76A3, synthetic insert (501 bp)+ poly A tail (21 bp), target sequence 1-501 --- --- --- --- --- --- AFFX-r2-TagA // --- // unknown // --- // --- /// AFFX-r2-TagA // --- // unknown // --- // --- /// AFFX-r2-TagA // --- // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-TagA // --- // unknown // --- // --- /// AFFX-r2-TagA // --- // affx // --- // --- /// AFFX-r2-TagA // --- // affx // --- // --- /// AFFX-r2-TagA // --- // affx // --- // --- /// AFFX-r2-TagA // --- // affx // --- // --- /// AFFX-r2-TagA // --- // affx // --- // --- /// AFFX-r2-TagA // --- // affx // --- // --- /// AFFX-r2-TagA // --- // affx // --- // --- /// AFFX-r2-TagA // --- // affx // --- // --- /// AFFX-r2-TagA // --- // affx // --- // --- /// AFFX-r2-TagA // --- // affx // --- // --- /// AFFX-r2-TagA // --- // affx // --- // --- /// AFFX-r2-TagA // --- // affx // --- // --- --- AFFX_control No -1.60648451327665 1.14922132597563 2.77860058634339 1.31969999856677 -2.19015432396618 Max fold change below threshold 0 2.77860058634339 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774004_at SPCC1020.13c.S1 --- 2.77827103806674 --- --- --- --- 0.71754777431488 0.515602707862854 0.258271336555481 0.627475321292877 0.753906011581421 0.916015625 0.828612983226776 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1020.13c /DEF=phospholipase (predicted) --- --- --- --- --- --- SPCC1020.13c // ||SPCC14G10.05|phospholipase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.52051246672821 -1.39166797104127 1.83906139442822 -2.77827103806674 -1.14354740332483 Max fold change below threshold 0 2.77827103806674 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770705_at YDR416W.S1 Component of the spliceosome complex involved in pre-mRNA splicing; involved in regulation of cell cycle progression; similar to Drosophila crooked neck protein 2.77820105872397 135.693618774414 381.544296264648 SYF1 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction /// 398 // nuclear mRNA splicing, via spliceosome // traceable author statement /// 7049 // cell cycle // traceable author statement 5681 // spliceosome complex // inferred from direct assay --- 360.309692382813 129.69172668457 141.695510864258 402.778900146484 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR416W /GEN=SYF1 /DB_XREF=GI:6320624 /SEG=NC_001136:+1298420,1300999 /DEF=SYnthetic lethal with cdcForty /NOTE=Syf1p; go_component: spliceosome complex [goid GO:0005681] [evidence IDA] [pmid 12088152]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell cycle [goid GO:0007049] [evidence TAS] [pmid 11102353]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence TAS] [pmid 11102353]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 12088152] --- --- --- --- --- --- S0002824 // SYF1 SGDID:S0002824, Chr IV from 1298422-1301001, Verified ORF // sgd // 11 // --- /// GENSCAN00000025429 // cdna:Genscan chromosome:SGD1:IV:1298440:1301001:1 // ensembl // 11 // --- /// GENEFINDER00000023622 // cdna:GeneFinder chromosome:SGD1:IV:1300180:1301001:1 // ensembl // 11 // --- /// YDR416W // cdna:known chromosome:SGD1:IV:1298422:1301001:1 gene:YDR416W // ensembl // 11 // --- --- No cerevisiae_gene -1.54338143736124 -2.77820105872397 -1.00528910954991 -2.54284479575351 1.11786862430154 Max fold change below threshold 4 2.77820105872397 Max fold change at or above threshold 0.710722021219207 -0.901079358039974 -0.817184264097181 1.00754160091795 258.618957519531 143.080883703077 0.553249789092787 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773025_at SPBC19F8.03c.S1 --- 2.77802807202698 --- --- --- --- 6.2404932975769 14.1889591217041 17.3362655639648 3.46664714813232 0.149657994508743 0.0375977009534836 0.0676269978284836 0.149657994508743 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19F8.03c /DEF=ENTH domain protein --- --- --- --- --- --- SPBC19F8.03c // |||ENTH domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.1544280878286 2.27369190945425 1.10296843579899 2.77802807202698 -1.8001524328598 Max fold change below threshold 4 2.77802807202698 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1779117_at SPAC23G3.08c.S1 --- 2.77756201670275 --- --- --- --- 3.2114474773407 1.9997661113739 1.47818565368652 2.97355675697327 0.466064006090164 0.850341975688934 0.753906011581421 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23G3.08c /GEN=ubp7 /DEF=ubiquitin C-terminal hydrolase activity --- --- --- --- --- --- SPAC23G3.08c // |ubp7||ubiquitin C-terminal hydrolase activity|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.77756201670275 -1.60591154089232 1.4003639404246 -2.17256030684069 -1.08000207825513 Max fold change below threshold 2 2.77756201670275 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770044_at YML124C.S1 Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules; expressed at lower level than Tub1p 2.77676043038139 622.267395019531 1312.79010009766 TUB3 70 // mitotic sister chromatid segregation // traceable author statement /// 743 // nuclear migration during conjugation with cellular fusion // traceable author statement /// 30473 // nuclear migration, microtubule-mediated // traceable author statement /// 45143 // homologous chromosome segregation // traceable author statement 5816 // spindle pole body // inferred from direct assay /// 5827 // polar microtubule // traceable author statement /// 5828 // kinetochore microtubule // traceable author statement /// 5880 // nuclear microtubule // traceable author statement /// 5881 // cytoplasmic microtubule // traceable author statement /// 45298 // tubulin // traceable author statement 5200 // structural constituent of cytoskeleton // traceable author statement 1256.34851074219 452.451171875 792.083618164063 1369.23168945313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML124C /GEN=TUB3 /DB_XREF=GI:6323511 /SEG=NC_001145:-22049,23684 /DEF=Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules; expressed at lower level than Tub1p /NOTE=Tub3p; go_component: cytoplasmic microtubule [goid GO:0005881] [evidence TAS]; go_component: kinetochore microtubule [goid GO:0005828] [evidence TAS]; go_component: nuclear microtubule [goid GO:0005880] [evidence TAS]; go_component: polar microtubule [goid GO:0005827] [evidence TAS]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 9585415]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence TAS]; go_process: homologous chromosome segregation [goid GO:0045143] [evidence TAS]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence TAS]; go_process: nuclear migration (sensu Saccharomyces) [goid GO:0000065] [evidence TAS]; go_process: nuclear migration during conjugation with cellular fusion [goid GO:0000743] [evidence TAS] --- --- --- --- --- --- S0004593 // TUB3 SGDID:S0004593, Chr XIII from 23684-23660,23361-22049, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// M28428 // S.cerevisiae alpha-tubulin (TUB3) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000018612 // cdna:Genscan chromosome:SGD1:XIII:22049:23434:-1 // ensembl // 11 // --- /// GENEFINDER00000021851 // cdna:GeneFinder chromosome:SGD1:XIII:22049:23434:-1 // ensembl // 11 // --- /// YML124C // cdna:known chromosome:SGD1:XIII:22049:23684:-1 gene:YML124C // ensembl // 11 // --- --- No cerevisiae_gene -1.15296258643433 -2.77676043038139 -1.31344547000406 -1.58613116334135 1.08985021094525 Max fold change below threshold 4 2.77676043038139 Max fold change at or above threshold 0.680208236666358 -1.21307491440399 -0.41319617737272 0.946062855110356 967.528747558594 424.604918927584 0.438855093452269 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771966_at YAL058W.S1 Calnexin; integral membrane ER chaperone involved in the folding and quality control of glycoproteins, 24% identical and 31% similar to mammalian calnexin but the Ca+ binding typical of calnexins has not been demonstrated in yeast 2.77649622280908 123.901969909668 327.254531860352 CNE1 6457 // protein folding // inferred from mutant phenotype /// 30433 // ER-associated protein catabolism // inferred from mutant phenotype 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay 51082 // unfolded protein binding // inferred from mutant phenotype /// 51082 // unfolded protein binding // inferred from sequence similarity 302.850341796875 109.076446533203 138.727493286133 351.658721923828 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL058W /GEN=CNE1 /DB_XREF=GI:6319260 /SEG=NC_001133:+37465,38973 /DEF=Functions in endoplasmic reticulum protein quality control /NOTE=Cne1p; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA] [pmid 7814381]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER-associated protein catabolism [goid GO:0030433] [evidence IMP] [pmid 7814381] --- --- --- --- --- S0000054 // span:482-501 // numtm:1 S0000054 // CNE1 SGDID:S0000054, Chr I from 37465-38973, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018175 // cdna:GeneFinder chromosome:SGD1:I:37465:38973:1 // ensembl // 11 // --- /// GENSCAN00000020328 // cdna:Genscan chromosome:SGD1:I:37465:38973:1 // ensembl // 11 // --- /// YAL058W // cdna:known chromosome:SGD1:I:37465:38973:1 gene:YAL058W // ensembl // 11 // --- YAL056C-A // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene -1.4394819385182 -2.77649622280908 1.66309599145489 -2.18305928135117 1.16116336484008 Max fold change below threshold 4 2.77649622280908 Max fold change at or above threshold 0.645557604831268 -0.973296113620823 -0.725581078390398 1.05331958717995 225.57825088501 119.698211799491 0.530628335532702 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770838_at SPCC74.05.S1 --- 2.77632103070265 --- --- --- --- 1.60274815559387 0.792681276798248 1.34016895294189 0.577292084693909 0.696289002895355 0.919434010982513 0.725830018520355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC74.05 /GEN=rpl2702 /DEF=60S ribosomal protein L27 --- --- --- --- --- --- SPCC74.05 // |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.03825069956279 -2.0219326512512 -1.15131793142013 -1.19592992516024 -2.77632103070265 Max fold change below threshold 0 2.77632103070265 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776596_at YDR019C.S1 T subunit of the mitochondrial glycine decarboxylase complex, required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of levels of 5,10-methylene-THF in the cytoplasm 2.77602082506793 474.152816772461 721.783050537109 GCV1 6544 // glycine metabolism // inferred from mutant phenotype /// 6546 // glycine catabolism // inferred from curator /// 6730 // one-carbon compound metabolism // inferred from genetic interaction /// 6730 // one-carbon compound metabolism // inferred from mutant phenotype 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay /// 5960 // glycine cleavage complex // traceable author statement 4375 // glycine dehydrogenase (decarboxylating) activity // inferred from sequence similarity /// 4375 // glycine dehydrogenase (decarboxylating) activity // inferred from mutant phenotype 691.210632324219 556.513122558594 391.792510986328 752.35546875 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR019C /GEN=GCV1 /DB_XREF=GI:6320222 /SEG=NC_001136:-484159,485361 /DEF=T subunit of the mitochondrial glycine decarboxylase complex, required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of levels of 5,10-methylene-THF in the cytoplasm /NOTE=Gcv1p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 8852837]; go_function: glycine dehydrogenase (decarboxylating) activity [goid GO:0004375] [evidence IMP,ISS] [pmid 9047339]; go_process: glycine metabolism [goid GO:0006544] [evidence IMP] [pmid 9047339]; go_process: one-carbon compound metabolism [goid GO:0006730] [evidence IGI,IMP] [pmid 10871621] --- --- --- --- --- --- S0002426 // GCV1 SGDID:S0002426, Chr IV from 485361-484159, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023778 // cdna:GeneFinder chromosome:SGD1:IV:484159:485361:-1 // ensembl // 11 // --- /// GENSCAN00000025111 // cdna:Genscan chromosome:SGD1:IV:484159:485268:-1 // ensembl // 11 // --- /// YDR019C // cdna:known chromosome:SGD1:IV:484159:485361:-1 gene:YDR019C // ensembl // 11 // --- --- No cerevisiae_gene -2.77602082506793 -1.24203833531606 1.87932337848058 -1.76422624971599 1.08846049751894 Max fold change below threshold 4 2.77602082506793 Max fold change at or above threshold 0.582931909405315 -0.259165945764945 -1.28896132912947 0.965195365489097 597.967933654785 159.954699965827 0.267497119767246 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779484_at YCR107W.S1 Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role /// Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role 2.77553907639381 4.84505355358124 10.4265217781067 AAD15 /// AAD3 6081 // aldehyde metabolism // inferred from sequence similarity --- 18456 // aryl-alcohol dehydrogenase activity // inferred from sequence similarity 8.8198127746582 3.17769360542297 6.5124135017395 12.0332307815552 0.014160200022161 0.0805663987994194 0.000244141003349796 0.000732421991415322 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR107W /GEN=AAD3 /DB_XREF=GI:6319951 /SEG=NC_001135:+313886,314977 /DEF=Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role /NOTE=Aad3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: aryl-alcohol dehydrogenase activity [goid GO:0018456] [evidence ISS] [pmid 10572264]; go_process: aldehyde metabolism [goid GO:0006081] [evidence ISS] [pmid 10572264] --- --- --- --- scop // a.2.10.Epsilon subunit of F1F0-ATP synthase C-terminal domain // All alpha proteins; Long alpha-hairpin; Epsilon subunit of F1F0-ATP synthase C-terminal domain; Epsilon subunit of F1F0-ATP synthase C-terminal domain // 0.920000016689301 /// scop // a.2.10.Epsilon subunit of F1F0-ATP synthase C-terminal domain // All alpha proteins; Long alpha-hairpin; Epsilon subunit of F1F0-ATP synthase C-terminal domain; Epsilon subunit of F1F0-ATP synthase C-terminal domain // 1.5 --- S0000704 // AAD3 SGDID:S0000704, Chr III from 313886-314977, Verified ORF // sgd // 11 // --- /// GENSCAN00000022534 // cdna:Genscan chromosome:SGD1:III:313886:314977:1 // ensembl // 11 // --- /// GENEFINDER00000023332 // cdna:GeneFinder chromosome:SGD1:III:313886:314977:1 // ensembl // 11 // --- /// YCR107W // cdna:known chromosome:SGD1:III:313886:314977:1 gene:YCR107W // ensembl // 11 // --- --- No cerevisiae_gene 1.20320841448387 -2.77553907639381 1.56279483975553 -1.35430785718726 1.36434084135323 Max fold change below threshold 4 2.77553907639381 Max fold change at or above threshold 0.31691221390077 -1.19323859599632 -0.300678584208239 1.17700496630379 7.63578766584396 3.73612961848474 0.489291973792961 PPAPPP Called_P_>2EXP 2 0 PAPP 1 3 0 Yes Yes 2 < x = 3
1772913_at SPCPB1C11.03.S1 --- 2.77528083253799 --- --- --- --- 1.3308390378952 1.1229887008667 1.09290742874146 0.915200412273407 0.780517995357513 0.904784977436066 0.805419981479645 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCPB1C11.03 /DEF=membrane transporter --- --- --- --- --- --- SPCPB1C11.03 // |||membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.77528083253799 -1.18508675721144 -1.38605231630695 -1.21770518060046 -1.45415039159492 Max fold change below threshold 0 2.77528083253799 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779279_at YHR023W.S1 Type II myosin heavy chain, required for wild-type cytokinesis and cell separation; localizes to the actomyosin ring; binds to myosin light chains Mlc1p and Mlc2p through its IQ1 and IQ2 motifs respectively 2.7751170560131 195.420181274414 468.339782714844 MYO1 910 // cytokinesis // inferred from mutant phenotype /// 6970 // response to osmotic stress // inferred from mutant phenotype /// 7120 // axial bud site selection // inferred from mutant phenotype 142 // contractile ring (sensu Saccharomyces) // inferred from direct assay 146 // microfilament motor activity // traceable author statement 443.468414306641 231.038665771484 159.801696777344 493.211151123047 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR023W /GEN=MYO1 /DB_XREF=GI:6321812 /SEG=NC_001140:+151658,157444 /DEF=Myo1 is a type II myosin, is localized to the actomyosin ring and is important for cytokinesis. /NOTE=Myo1p; go_component: contractile ring (sensu Saccharomyces) [goid GO:0000142] [evidence IDA] [pmid 10652251]; go_function: microfilament motor activity [goid GO:0000146] [evidence TAS] [pmid 9153752]; go_process: axial budding [goid GO:0007120] [evidence IMP] [pmid 10652251]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251]; go_process: response to osmotic stress [goid GO:0006970] [evidence IMP] [pmid 10652251] --- --- --- --- scop // a.2.7.Seryl-tRNA synthetase (SerRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) // 0.689999997615814 /// scop // a.4.5.Forkhead DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Forkhead DNA-binding domain // 4.09999990463257 --- S0001065 // MYO1 SGDID:S0001065, Chr VIII from 151658-157444, Verified ORF // sgd // 10 // --- /// GENSCAN00000016571 // cdna:Genscan chromosome:SGD1:VIII:151658:157444:1 // ensembl // 10 // --- /// GENEFINDER00000020287 // cdna:GeneFinder chromosome:SGD1:VIII:151658:157444:1 // ensembl // 10 // --- /// YHR023W // cdna:known chromosome:SGD1:VIII:151658:157444:1 gene:YHR023W // ensembl // 10 // --- --- No cerevisiae_gene -1.25733808376288 -1.91945539862694 -1.33256032415216 -2.7751170560131 1.11216748524059 Max fold change below threshold 4 2.7751170560131 Max fold change at or above threshold 0.690893177200308 -0.624353043724674 -1.0654125229444 0.998872389468767 331.879981994629 161.513293218786 0.486661751179074 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778238_at YOR064C.S1 Subunit of the NuA3 histone acetyltransferase complex that acetylates histone H3; has similarity to the human tumor suppressor ING1 2.77480895005678 3168.91564941406 1237.03460693359 YNG1 16568 // chromatin modification // inferred from mutant phenotype /// 16568 // chromatin modification // inferred from physical interaction /// 16568 // chromatin modification // inferred from sequence similarity /// 16573 // histone acetylation // inferred from direct assay 123 // histone acetyltransferase complex // inferred from direct assay /// 788 // nuclear nucleosome // traceable author statement 4402 // histone acetyltransferase activity // inferred from mutant phenotype 1234.32897949219 3425.02709960938 2912.80419921875 1239.740234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR064C /GEN=YNG1 /DB_XREF=GI:6324638 /SEG=NC_001147:-446080,446739 /DEF=Yeast homolog of mammalian Ing1 /NOTE=Yng1p; go_component: histone acetyltransferase complex [goid GO:0000123] [evidence IDA] [pmid 12077334]; go_component: nuclear nucleosome [goid GO:0000788] [evidence TAS] [pmid 12077334]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin modification [goid GO:0016568] [evidence IMP,IPI,ISS] [pmid 10805724]; go_process: histone acetylation [goid GO:0016573] [evidence IDA] [pmid 12077334] --- --- --- --- --- --- S0005590 // YNG1 SGDID:S0005590, Chr XV from 446739-446080, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017509 // cdna:Genscan chromosome:SGD1:XV:446080:446739:-1 // ensembl // 11 // --- /// GENEFINDER00000022853 // cdna:GeneFinder chromosome:SGD1:XV:446080:446739:-1 // ensembl // 11 // --- /// YOR064C // cdna:known chromosome:SGD1:XV:446080:446739:-1 gene:YOR064C // ensembl // 11 // --- --- No cerevisiae_gene 1.3254253051167 2.77480895005678 1.11401265652408 2.35982809090094 1.00438396486894 Max fold change below threshold 4 2.77480895005678 Max fold change at or above threshold -0.853577393064102 1.07688028015857 0.625506072375634 -0.848808959470098 2202.97512817383 1134.80764199304 0.515125035902583 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776826_at SPAC1F5.07c.S1 --- 2.77438721302994 --- --- --- --- 0.655559480190277 1.08884620666504 0.57793390750885 0.236289829015732 0.953857004642487 0.962401986122131 0.989257991313934 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F5.07c /DEF=protoporphyrinogen oxidase (predicted) --- --- --- --- --- --- SPAC1F5.07c // |hem14||protoporphyrinogen oxidase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.13925833802496 1.66094189706325 -1.96748720261412 -1.13431565733187 -2.77438721302994 Max fold change below threshold 0 2.77438721302994 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770122_at YOR279C.S1 DNA-binding protein required for repression of middle sporulation genes; specificity factor that directs the Hst1p histone deacetylase to some of the promoters regulated by Sum1p 2.77417915349948 87.5469398498535 247.945869445801 RFM1 6342 // chromatin silencing // inferred from mutant phenotype /// 6342 // chromatin silencing // inferred from physical interaction /// 6342 // chromatin silencing // inferred from genetic interaction 118 // histone deacetylase complex // inferred from physical interaction /// 5634 // nucleus // inferred from physical interaction 51082 // unfolded protein binding // inferred from mutant phenotype /// 51082 // unfolded protein binding // inferred from genetic interaction /// 51082 // unfolded protein binding // inferred from physical interaction 239.332595825195 86.2714996337891 88.822380065918 256.559143066406 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR279C /GEN=RFM1 /DB_XREF=GI:6324853 /SEG=NC_001147:-843695,844627 /DEF=Repression Factor of MSE /NOTE=Rfm1p; go_component: histone deacetylase complex [goid GO:0000118] [evidence IPI] [pmid 12612074]; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 11711434]; go_function: chaperone activity [goid GO:0003754] [evidence IGI,IMP,IPI] [pmid 12612074]; go_process: chromatin silencing [goid GO:0006342] [evidence IGI,IMP,IPI] [pmid 12612074] --- --- --- --- --- --- S0005805 // RFM1 SGDID:S0005805, Chr XV from 844627-843695, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017719 // cdna:Genscan chromosome:SGD1:XV:843695:844627:-1 // ensembl // 11 // --- /// GENEFINDER00000022641 // cdna:GeneFinder chromosome:SGD1:XV:843695:844627:-1 // ensembl // 11 // --- /// YOR279C // cdna:known chromosome:SGD1:XV:843695:844627:-1 gene:YOR279C // ensembl // 11 // --- --- No cerevisiae_gene 1.1017810058221 -2.77417915349948 1.02806552620256 -2.69450779913327 1.0719774386845 Max fold change below threshold 4 2.77417915349948 Max fold change at or above threshold 0.770747964860864 -0.877216907255363 -0.849752310112663 0.956221252507162 167.746404647827 92.8788585128356 0.553686135376963 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779918_at YKR096W.S1 Hypothetical protein 2.7732312248551 738.56640625 773.940246582031 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 738.999938964844 726.869934082031 750.262878417969 808.880554199219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR096W /GEN=MLP1 /DB_XREF=GI:6322949 /SEG=NC_001143:+626433,630020 /DEF=Hypothetical ORF /NOTE=Ykr096wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001804 // YKR096W SGDID:S0001804, Chr XI from 626435-630022, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023153 // cdna:GeneFinder chromosome:SGD1:XI:626435:630022:1 // ensembl // 11 // --- /// GENSCAN00000018497 // cdna:Genscan chromosome:SGD1:XI:627995:630022:1 // ensembl // 11 // --- /// YKR096W // cdna:known chromosome:SGD1:XI:626435:630022:1 gene:YKR096W // ensembl // 11 // --- --- No cerevisiae_gene -2.7732312248551 -1.01668799920598 1.29095585274751 1.01524078536312 1.09456105684157 Max fold change below threshold 4 2.7732312248551 Max fold change at or above threshold -0.474490190995652 -0.808080817758801 -0.164744970967989 1.44731597972244 756.253326416016 36.3619475778162 0.0480817026619113 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775700_at SPBPB8B6.03.S1 --- 2.77276005271927 --- --- --- --- 0.383501052856445 0.770829141139984 1.01840150356293 0.327094227075577 0.904784977436066 0.725830018520355 0.780517995357513 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB8B6.03 /DEF=acetamidase (predicted) --- --- --- --- --- --- SPBPB8B6.03 // ||SPAPB8B6.03|acetamidase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.77276005271927 2.00997920448611 2.65479042846841 2.65553769925149 -1.17244824613745 Max fold change below threshold 0 2.77276005271927 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779803_x_at YCR107W.S1 Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role /// Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role 2.77237857411462 15.6249179840088 27.1436610221863 AAD15 /// AAD3 6081 // aldehyde metabolism // inferred from sequence similarity --- 18456 // aryl-alcohol dehydrogenase activity // inferred from sequence similarity 39.0496635437012 14.0852565765381 17.1645793914795 15.2376585006714 0.000732421991415322 0.00585938012227416 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR107W /GEN=AAD3 /DB_XREF=GI:6319951 /SEG=NC_001135:+313886,314977 /DEF=Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role /NOTE=Aad3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: aryl-alcohol dehydrogenase activity [goid GO:0018456] [evidence ISS] [pmid 10572264]; go_process: aldehyde metabolism [goid GO:0006081] [evidence ISS] [pmid 10572264] --- --- --- --- scop // a.2.10.Epsilon subunit of F1F0-ATP synthase C-terminal domain // All alpha proteins; Long alpha-hairpin; Epsilon subunit of F1F0-ATP synthase C-terminal domain; Epsilon subunit of F1F0-ATP synthase C-terminal domain // 0.920000016689301 /// scop // a.2.10.Epsilon subunit of F1F0-ATP synthase C-terminal domain // All alpha proteins; Long alpha-hairpin; Epsilon subunit of F1F0-ATP synthase C-terminal domain; Epsilon subunit of F1F0-ATP synthase C-terminal domain // 1.5 --- S0000704 // AAD3 SGDID:S0000704, Chr III from 313886-314977, Verified ORF // sgd // 11 // --- /// GENSCAN00000022534 // cdna:Genscan chromosome:SGD1:III:313886:314977:1 // ensembl // 11 // --- /// GENEFINDER00000023332 // cdna:GeneFinder chromosome:SGD1:III:313886:314977:1 // ensembl // 11 // --- /// YCR107W // cdna:known chromosome:SGD1:III:313886:314977:1 gene:YCR107W // ensembl // 11 // --- --- No cerevisiae_gene -2.17399665425765 -2.77237857411462 -1.26851797751841 -2.27501429852021 -2.56270761954539 Max fold change below threshold 4 2.77237857411462 Max fold change at or above threshold 1.491349309622 -0.61620023957108 -0.3562371081021 -0.518911961948822 21.3842895030975 11.8452289658961 0.553922025989233 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1776006_at YGL188C-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 2.77200649215116 4.86193370819092 4.33024907112122 --- --- --- --- 2.29599237442017 6.01716327667236 3.70670413970947 6.36450576782227 0.24609400331974 0.0561522990465164 0.00415039015933871 0.0107421996071935 A M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL188C-A /GEN=RPS26A /DB_XREF=GI:33438791 /SEG=NC_001139:-148828,148968 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ygl188c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028635 // YGL188C-A SGDID:S0028635, Chr VII from 148970-148830, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YGL188C-A // cdna:known chromosome:SGD1:VII:148830:148970:-1 gene:YGL188C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.36054740921424 2.62072441690576 1.76512452116232 1.61442354121301 2.77200649215116 Max fold change below threshold 3 2.77200649215116 Max fold change at or above threshold -1.18891851889706 0.734550413684858 -0.459723240142331 0.914091345354534 4.59609138965607 1.93461450778785 0.420926031223375 AAMAPP No 3 0 AMPP 1 2 1 No No 1 < x = 2
1772948_at YEL055C.S1 Protein with sequence similarity to the human MybBP1A and weak sequence similar to B-type DNA polymerases, not required for chromosomal DNA replication; required for the synthesis of rRNA 2.77179701426817 148.854415893555 193.030876159668 POL5 9303 // rRNA transcription // inferred from mutant phenotype 5730 // nucleolus // inferred from direct assay 3887 // DNA-directed DNA polymerase activity // inferred from mutant phenotype 182.415634155273 134.825485229492 162.883346557617 203.646118164063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL055C /GEN=POL5 /DB_XREF=GI:6320780 /SEG=NC_001137:-48471,51539 /DEF=DNA polymerase V that has motifs typical of DNA polymerase family. Aphidicolin-sensitive; stimulated by yeast proliferating cell nuclear antigen (PCNA). /NOTE=Pol5p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 12093911]; go_function: DNA-directed DNA polymerase activity [goid GO:0003887] [evidence TAS] [pmid 9745046]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence NAS] [pmid 7667891] --- --- --- --- --- --- S0000781 // POL5 SGDID:S0000781, Chr V from 51539-48471, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016758 // cdna:Genscan chromosome:SGD1:V:48471:51302:-1 // ensembl // 11 // --- /// GENEFINDER00000019701 // cdna:GeneFinder chromosome:SGD1:V:48471:50540:-1 // ensembl // 11 // --- /// YEL055C // cdna:known chromosome:SGD1:V:48471:51539:-1 gene:YEL055C // ensembl // 11 // --- --- No cerevisiae_gene 2.77179701426817 -1.35297591434421 -1.11080643541233 -1.11991580484102 1.1163852216237 Max fold change below threshold 4 2.77179701426817 Max fold change at or above threshold 0.391944251545933 -1.23384713710514 -0.275324620136933 1.11722750569614 170.942646026611 29.2719897878578 0.171238660850616 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777807_at YJL013C.S1 Component of the spindle-assembly checkpoint complex, which delays the onset of anaphase in cells with defects in mitotic spindle assembly; interacts physically with the spindle checkpoint proteins Bub3p and Mad2p 2.77093151234413 279.034873962402 389.583145141602 MAD3 7094 // mitotic spindle checkpoint // inferred from mutant phenotype /// 7094 // mitotic spindle checkpoint // inferred from genetic interaction 5634 // nucleus // inferred from direct assay --- 359.648864746094 245.071792602539 312.997955322266 419.517425537109 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL013C /GEN=MAD3 /DB_XREF=GI:6322447 /SEG=NC_001142:-409408,410955 /DEF=checkpoint protein required for cell cycle arrest in response to loss of microtubule function /NOTE=Mad3p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10704439]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitotic spindle checkpoint [goid GO:0007094] [evidence IGI,IMP] [pmid 10704439] --- --- --- --- --- --- S0003550 // MAD3 SGDID:S0003550, Chr X from 410955-409408, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024125 // cdna:Genscan chromosome:SGD1:X:409408:410955:-1 // ensembl // 11 // --- /// GENEFINDER00000024525 // cdna:GeneFinder chromosome:SGD1:X:409408:410955:-1 // ensembl // 11 // --- /// YJL013C // cdna:known chromosome:SGD1:X:409408:410955:-1 gene:YJL013C // ensembl // 11 // --- --- No cerevisiae_gene -2.77093151234413 -1.46752451976135 1.15710717732597 -1.14904541269541 1.16646392261875 Max fold change below threshold 4 2.77093151234413 Max fold change at or above threshold 0.343561393101503 -1.2098909933316 -0.288938331476219 1.15526793170631 334.309009552002 73.7564106529435 0.220623460766978 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769836_at SPCC18.02.S1 --- 2.76938298630002 --- --- --- --- 5.16386795043945 7.26904296875 1.86462759971619 4.16834449768066 0.665526986122131 0.398925989866257 0.780517995357513 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18.02 /DEF=MFS amine transporter --- --- --- --- --- --- SPCC18.02 // |||membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.66219286432436 1.40767406109434 -2.59085770268484 -2.76938298630002 -1.23882945694933 Max fold change below threshold 3 2.76938298630002 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777127_at SPAC4F8.13c.S1 --- 2.76857754159696 --- --- --- --- 0.732022643089294 1.51819455623627 0.371058762073517 0.264403879642487 0.870360970497131 0.828612983226776 0.994140982627869 0.951416015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F8.13c /GEN=rng2 /DEF=IQGAP --- --- --- --- --- --- SPAC4F8.13c // |rng2||GTPase activating protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.31720488593148 2.07397212445391 -2.67570485529032 -1.97279438706331 -2.76857754159696 Max fold change below threshold 0 2.76857754159696 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776518_at SPAC4G9.12.S1 --- 2.76806290308628 --- --- --- --- 5.34116315841675 14.7846755981445 4.70409202575684 5.85680627822876 0.466064006090164 0.24609400331974 0.366210997104645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G9.12 /DEF=glucokinase (predicted) --- --- --- --- --- --- SPAC4G9.12 // |||gluconokinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.72168791090908 2.76806290308628 1.01139963991458 -1.1354291389649 1.09654135335661 Max fold change below threshold 4 2.76806290308628 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771000_at YIL006W.S1 Pvruvate transporter of the mitochondrial inner membrane, member of the mitochondrial carrier family; has putative mouse and human orthologs 2.76754788904032 219.615585327148 516.313842773438 --- 6810 // transport // inferred from sequence similarity /// 6850 // mitochondrial pyruvate transport // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity /// 5477 // pyruvate carrier activity // inferred from mutant phenotype 473.086669921875 170.940734863281 268.290435791016 559.541015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL006W /GEN=NAS2 /DB_XREF=GI:6322185 /SEG=NC_001141:+344059,345180 /DEF=Pvruvate transporter of the mitochondrial inner membrane, member of the mitochondrial carrier family; has putative mouse and human orthologs /NOTE=Yil006wp; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence ISS] [pmid 10930523]; go_function: pyruvate carrier activity [goid GO:0005477] [evidence IMP] [pmid 12887330]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 10930523]; go_process: mitochondrial pyruvate transport [goid GO:0006850] [evidence IMP] [pmid 12887330]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 10930523] --- --- --- --- --- S0001268 // span:138-157,177-199,235-257 // numtm:3 S0001268 // YIL006W SGDID:S0001268, Chr IX from 344059-345180, Verified ORF // sgd // 11 // --- /// GENSCAN00000016471 // cdna:Genscan chromosome:SGD1:IX:344059:345180:1 // ensembl // 11 // --- /// GENEFINDER00000019139 // cdna:GeneFinder chromosome:SGD1:IX:344059:345180:1 // ensembl // 11 // --- /// YIL006W // cdna:known chromosome:SGD1:IX:344059:345180:1 gene:YIL006W // ensembl // 11 // --- --- No cerevisiae_gene -1.21687346783062 -2.76754788904032 1.09012208923382 -1.76333781160349 1.18274525832106 Max fold change below threshold 4 2.76754788904032 Max fold change at or above threshold 0.586108464653734 -1.09850906962135 -0.555734886319852 1.06813549128747 367.964714050293 179.355805642027 0.487426643896928 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773419_at SPAC6G9.04.S1 --- 2.7670095686399 --- --- --- --- 7.18458366394043 19.4260902404785 2.59651565551758 6.15633201599121 0.533936023712158 0.303710997104645 0.665526986122131 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G9.04 /DEF=pleckstrin homology domain --- --- --- --- --- --- SPAC6G9.04 // |||pleckstrin homology domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.18204633395462 2.70385747443912 1.00550773854987 -2.7670095686399 -1.16702342324591 Max fold change below threshold 4 2.7670095686399 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776507_at YOR301W.S1 Protein involved in bud site selection during bipolar budding; localization requires Rax2p; has similarity to members of the insulin-related peptide superfamily 2.76630219873298 87.6987781524658 67.236270904541 RAX1 282 // bud site selection // inferred from genetic interaction 5935 // bud neck // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity --- 62.3767471313477 61.1559257507324 114.241630554199 72.0957946777344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR301W /GEN=RAX1 /DB_XREF=GI:6324876 /SEG=NC_001147:+880961,882268 /DEF=A rax1 mutation converts the budding pattern of an axl1 null mutant from bipolar to axial. /NOTE=Rax1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: bud site selection [goid GO:0000282] [evidence IGI] [pmid 11110666] --- --- --- --- --- S0005827 // span:298-320,327-349,409-431 // numtm:3 S0005827 // RAX1 SGDID:S0005827, Chr XV from 880961-882268, Verified ORF // sgd // 11 // --- /// GENSCAN00000017755 // cdna:Genscan chromosome:SGD1:XV:880961:882268:1 // ensembl // 11 // --- /// GENEFINDER00000022876 // cdna:GeneFinder chromosome:SGD1:XV:880961:887872:1 // ensembl // 11 // --- /// YOR301W // cdna:known chromosome:SGD1:XV:880961:882268:1 gene:YOR301W // ensembl // 11 // --- --- No cerevisiae_gene 2.76630219873298 -1.01996243807331 1.394589794694 1.83147784724392 1.15581202921533 Max fold change below threshold 4 2.76630219873298 Max fold change at or above threshold -0.603632677773532 -0.652465660970464 1.47096809586512 -0.214869757121119 77.4675245285034 24.9999344846891 0.32271502977342 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773099_at YNL132W.S1 Essential protein of unknown function; heterozygous mutant shows haploinsufficiency in K1 killer toxin resistance 2.76558675141056 126.901100158691 362.944229125977 KRE33 --- 5730 // nucleolus // inferred from direct assay --- 346.331420898438 128.573287963867 125.228912353516 379.557037353516 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL132W /GEN=KRE33 /DB_XREF=GI:6324197 /SEG=NC_001146:+375321,378491 /DEF=Killer toxin REsistant /NOTE=Kre33p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005076 // KRE33 SGDID:S0005076, Chr XIV from 375321-378491, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020602 // cdna:GeneFinder chromosome:SGD1:XIV:375321:378491:1 // ensembl // 11 // --- /// GENSCAN00000019927 // cdna:Genscan chromosome:SGD1:XIV:375591:378491:1 // ensembl // 11 // --- /// YNL132W // cdna:known chromosome:SGD1:XIV:375321:378491:1 gene:YNL132W // ensembl // 11 // --- --- No cerevisiae_gene 1.77269471761597 -2.69364987380401 -1.42810871411375 -2.76558675141056 1.09593589969078 Max fold change below threshold 4 2.76558675141056 Max fold change at or above threshold 0.740427416971334 -0.849515087461462 -0.873933761804542 0.983021432294671 244.922664642334 136.959753152995 0.559195913342689 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770429_at YOL112W.S1 GTPase-activating protein of the Ras superfamily that acts primarily on Sec4p, localizes to the bud site and bud tip, has similarity to Msb3p; msb3 msb4 double mutation causes defects in secretion and actin organization 2.76419516011744 207.497001647949 463.107635498047 MSB4 7015 // actin filament organization // traceable author statement 131 // incipient bud site // inferred from direct assay /// 5934 // bud tip // inferred from direct assay 5097 // Rab GTPase activator activity // inferred from direct assay 434.608825683594 157.227981567383 257.766021728516 491.6064453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL112W /GEN=MSB4 /DB_XREF=GI:6324460 /SEG=NC_001147:+106709,108187 /DEF=GTPase-activating protein of the Ras superfamily that acts primarily on Sec4p, localizes to the bud site and bud tip, has similarity to Msb3p; msb3 msb4 double mutation causes defects in secretion and actin organization /NOTE=Msb4p; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 10679030]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 10679030]; go_function: Rab GTPase activator activity [goid GO:0005097] [evidence IDA] [pmid 10937877]; go_process: actin filament organization [goid GO:0007015] [evidence TAS] [pmid 10679030] --- --- --- --- --- --- S0005472 // MSB4 SGDID:S0005472, Chr XV from 106709-108187, Verified ORF // sgd // 11 // --- /// GENSCAN00000017376 // cdna:Genscan chromosome:SGD1:XV:106709:108187:1 // ensembl // 11 // --- /// GENEFINDER00000022810 // cdna:GeneFinder chromosome:SGD1:XV:106727:108187:1 // ensembl // 11 // --- /// YOL112W // cdna:known chromosome:SGD1:XV:106709:108187:1 gene:YOL112W // ensembl // 11 // --- --- No cerevisiae_gene 1.16707465953509 -2.76419516011744 -1.10423941510892 -1.68605940677989 1.13114694470195 Max fold change below threshold 4 2.76419516011744 Max fold change at or above threshold 0.640953498414624 -1.14934431390786 -0.500442137807133 1.00883295330037 335.302318572998 154.935587926779 0.462077293667889 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775560_at YJR106W.S1 Non-essential protein of unknown function 2.76348200885126 188.430648803711 94.3119773864746 ECM27 7047 // cell wall organization and biogenesis // inferred from mutant phenotype --- --- 79.2999267578125 157.717376708984 219.143920898438 109.324028015137 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR106W /GEN=ECM27 /DB_XREF=GI:6322566 /SEG=NC_001142:+624751,626928 /DEF=Non-essential protein of unknown function /NOTE=Ecm27p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584] --- --- --- --- --- S0003867 // span:20-42,116-138,151-170,175-194,441-463,468-490,528-550,565-587,607-629,668-690,702-724 // numtm:11 S0003867 // ECM27 SGDID:S0003867, Chr X from 624751-626928, Verified ORF // sgd // 11 // --- /// GENSCAN00000024216 // cdna:Genscan chromosome:SGD1:X:624751:626928:1 // ensembl // 11 // --- /// GENEFINDER00000024299 // cdna:GeneFinder chromosome:SGD1:X:625210:626928:1 // ensembl // 11 // --- /// YJR106W // cdna:known chromosome:SGD1:X:624751:626928:1 gene:YJR106W // ensembl // 11 // --- --- No cerevisiae_gene 1.02151674042717 1.98887165672503 1.76383182605349 2.76348200885126 1.37861448912834 Max fold change below threshold 4 2.76348200885126 Max fold change at or above threshold -1.01607850675183 0.267577138004054 1.27309989136744 -0.524598522619668 141.371313095093 61.0891638045847 0.432118528626054 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770964_at YPR068C.S1 Putative class I histone deacetylase (HDAC) with sequence similarity to Hda1p, Rpd3p, Hos2p, and Hos3p; deletion results in increased histone acetylation at rDNA repeats; interacts with the Tup1p-Ssn6p corepressor complex 2.76268699989491 160.106712341309 386.955520629883 HOS1 6325 // establishment and/or maintenance of chromatin architecture // inferred from sequence similarity /// 6355 // regulation of transcription, DNA-dependent // inferred from sequence similarity /// 6476 // protein amino acid deacetylation // inferred from sequence similarity 118 // histone deacetylase complex // traceable author statement 4407 // histone deacetylase activity // inferred from sequence similarity /// 4407 // histone deacetylase activity // traceable author statement 359.424499511719 190.113815307617 130.099609375 414.486541748047 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR068C /GEN=HOS1 /DB_XREF=GI:6325325 /SEG=NC_001148:-682936,684348 /DEF=Putative class I histone deacetylase (HDAC) with sequence similarity to Hda1p, Rpd3p, Hos2p, and Hos3p; deletion results in increased histone acetylation at rDNA repeats; interacts with the Tup1p-Ssn6p corepressor complex /NOTE=Hos1p; go_component: histone deacetylase complex [goid GO:0000118] [evidence TAS] [pmid 10384304]; go_function: histone deacetylase activity [goid GO:0004407] [evidence ISS] [pmid 10384304]; go_function: histone deacetylase activity [goid GO:0004407] [evidence TAS] [pmid 11095743]; go_process: establishment and/or maintenance of chromatin architecture [goid GO:0006325] [evidence ISS] [pmid 10384304]; go_process: protein amino acid deacetylation [goid GO:0006476] [evidence ISS] [pmid 10384304]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence ISS] [pmid 10384304] --- --- --- --- --- --- S0006272 // HOS1 SGDID:S0006272, Chr XVI from 684350-682938, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017236 // cdna:Genscan chromosome:SGD1:XVI:682938:684119:-1 // ensembl // 11 // --- /// YPR068C // cdna:known chromosome:SGD1:XVI:682938:684350:-1 gene:YPR068C // ensembl // 11 // --- --- No cerevisiae_gene 1.57414340517976 -1.89057538469861 -1.05227315450489 -2.76268699989491 1.15319501678692 Max fold change below threshold 4 2.76268699989491 Max fold change at or above threshold 0.635653767303858 -0.617329529749411 -1.06146451138374 1.0431402738293 273.531116485596 135.126050444792 0.494006137879043 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773733_at SPAC23C4.09c.S1 --- 2.76244425348332 --- --- --- --- 0.417352139949799 0.613310635089874 0.944374442100525 0.406356751918793 0.919434010982513 0.805419981479645 0.870360970497131 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C4.09c /DEF=DNA binding (double-stranded) --- --- --- --- --- --- SPAC23C4.09c // |||DNA binding protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 2.76244425348332 1.46952795105746 2.71878734197209 2.26277608691337 -1.02705846027927 Max fold change below threshold 0 2.76244425348332 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778123_at YDR013W.S1 Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p), which binds to DNA replication origins and facilitates assembly of the DNA replication machinery 2.76239790536671 96.2606925964355 271.780639648438 PSF1 6261 // DNA-dependent DNA replication // inferred from mutant phenotype 811 // GINS complex // inferred from physical interaction 3677 // DNA binding // inferred from physical interaction 245.737182617188 88.9579238891602 103.563461303711 297.824096679688 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR013W /GEN=PSF1 /DB_XREF=GI:6320216 /SEG=NC_001136:+473154,473780 /DEF=Partner of Sld Five 1 /NOTE=Psf1p; go_component: GINS complex [goid GO:0000811] [evidence IPI] [pmid 12730134]; go_function: DNA binding [goid GO:0003677] [evidence IPI] [pmid 12730134]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence IMP] [pmid 12730134] --- --- --- --- --- --- S0002420 // PSF1 SGDID:S0002420, Chr IV from 473154-473780, Verified ORF // sgd // 11 // --- /// YDR013W // cdna:known chromosome:SGD1:IV:473154:473780:1 gene:YDR013W // ensembl // 11 // --- --- No cerevisiae_gene 1.8314763106664 -2.76239790536671 -1.25694934038896 -2.37281739644195 1.21196187531637 Max fold change below threshold 4 2.76239790536671 Max fold change at or above threshold 0.595058435140203 -0.91657614276206 -0.775752442204958 1.09727014982681 184.020666122437 103.715051917901 0.563605458578739 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773961_at YGR256W.S1 6-phosphogluconate dehydrogenase (decarboxylating), catalyzes an NADPH regenerating reaction in the pentose phosphate pathway; required for growth on D-glucono-delta-lactone 2.76234852028365 3564.19470214844 5879.82983398438 GND2 6006 // glucose metabolism // inferred from genetic interaction /// 6006 // glucose metabolism // inferred from mutant phenotype 5829 // cytosol // traceable author statement 4616 // phosphogluconate dehydrogenase (decarboxylating) activity // inferred from mutant phenotype 6827.00341796875 3776.67651367188 3351.712890625 4932.65625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR256W /GEN=GND2 /DB_XREF=GI:6321695 /SEG=NC_001139:+1004629,1006107 /DEF=6-phosphogluconate dehydrogenase, decarboxylating; converts 6-phosphogluconate + NADP to ribulose-5-phosphate + NADPH + CO2 /NOTE=Gnd2p; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 11298766]; go_function: phosphogluconate dehydrogenase (decarboxylating) activity [goid GO:0004616] [evidence IMP] [pmid 1328471]; go_process: glucose metabolism [goid GO:0006006] [evidence IGI,IMP] [pmid 1328471] --- --- --- --- --- --- S0003488 // GND2 SGDID:S0003488, Chr VII from 1004630-1006108, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021523 // cdna:GeneFinder chromosome:SGD1:VII:1004630:1006108:1 // ensembl // 11 // --- /// GENSCAN00000019538 // cdna:Genscan chromosome:SGD1:VII:1004675:1006108:1 // ensembl // 11 // --- /// YGR256W // cdna:known chromosome:SGD1:VII:1004630:1006108:1 gene:YGR256W // ensembl // 11 // --- --- No cerevisiae_gene -2.76234852028365 -1.80767492086083 -1.36357078225686 -2.03686999476131 -1.38404199927144 Max fold change below threshold 4 2.76234852028365 Max fold change at or above threshold 1.35437709548476 -0.608240606310463 -0.881667407888992 0.135530918714694 4722.01226806641 1554.2134881932 0.329142196157323 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Sp-ACT1-M_at AFFX-r2-Sp-ACT1-M --- 2.76184149531647 --- --- --- --- 6.77464199066162 12.0300025939941 14.5160846710205 11.3063926696777 0.129638999700546 0.219482004642487 0.194580003619194 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=ACT1 actin (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPBC32H8.12c // |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- AFFX_control No 1.20350796138421 1.77573997424169 2.76184149531647 2.14270874992803 1.66892843714293 Max fold change below threshold 4 2.76184149531647 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777970_at SPBC1604.13c.S1 --- 2.76177982495138 --- --- --- --- 2.49643445014954 6.89460229873657 5.3446683883667 2.19072842597961 0.303710997104645 0.0805663987994194 0.24609400331974 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1604.13c /GEN=mrpl32 /DEF=mitochondrial ribosomal protein subunit YmL32 --- --- --- --- --- --- SPBC1604.13c // |mrpl32||mitochondrial ribosomal protein subunit L32|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.40900379674724 2.76177982495138 -1.94364241585274 2.14092077925241 -1.13954537702829 Max fold change below threshold 2 2.76177982495138 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775850_at SPAC1039.01.S1 --- 2.76156433552706 --- --- --- --- 11.5845232009888 6.05211973190308 10.2758235931396 7.87402009963989 0.111571997404099 0.111571997404099 0.0561522990465164 0.149657994508743 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1039.01 /DEF=amino acid permease family --- --- --- --- --- --- SPAC1039.01 // |||amino acid permease family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.76156433552706 -1.91412657286376 -1.98289411954446 -1.12735715010939 -1.47123363344203 Max fold change below threshold 4 2.76156433552706 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1775698_at YDR194C.S1 DEAD-box protein required for efficient splicing of mitochondrial Group I and II introns; presumed RNA helicase due to DEAD-box motif 2.76143490931966 643.516143798828 525.637390136719 MSS116 8380 // RNA splicing // inferred from sequence similarity /// 8380 // RNA splicing // inferred from mutant phenotype 5759 // mitochondrial matrix // inferred from mutant phenotype 3724 // RNA helicase activity // inferred from sequence similarity /// 31202 // RNA splicing factor activity, transesterification mechanism // inferred from mutant phenotype 453.100891113281 501.531005859375 785.501281738281 598.173889160156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR194C /GEN=MSS116 /DB_XREF=GI:6320400 /SEG=NC_001136:-845945,847939 /DEF=Mitochondrial RNA helicase of the DEAD box family necessary for splicing of several mt introns. /NOTE=Mss116p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IMP] [pmid 2535893]; go_function: RNA helicase activity [goid GO:0003724] [evidence ISS] [pmid 2535893]; go_process: RNA splicing [goid GO:0008380] [evidence ISS] [pmid 2535893] --- --- --- --- scop // a.4.5.C-terminal fragment of elongation factor SelB // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; C-terminal fragment of elongation factor SelB // 3.09999990463257 --- S0002602 // MSS116 SGDID:S0002602, Chr IV from 847941-845947, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023533 // cdna:GeneFinder chromosome:SGD1:IV:845947:847572:-1 // ensembl // 11 // --- /// GENSCAN00000025245 // cdna:Genscan chromosome:SGD1:IV:845947:847941:-1 // ensembl // 11 // --- /// YDR194C // cdna:known chromosome:SGD1:IV:845947:847941:-1 gene:YDR194C // ensembl // 11 // --- --- No cerevisiae_gene 2.76143490931966 1.10688594018674 1.27918807641301 1.73361230830574 1.32017813447779 Max fold change below threshold 4 2.76143490931966 Max fold change at or above threshold -0.895007972854082 -0.565325142887896 1.36777215966573 0.0925609560762473 584.576766967773 146.899111340014 0.251291395143852 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779131_at YHR182W.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and cytoplasm 2.76140308476091 97.3940200805664 231.800758361816 --- --- 5737 // cytoplasm // inferred from direct assay --- 219.668823242188 79.5497131347656 115.238327026367 243.932693481445 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR182W /GEN=OYE2 /DB_XREF=GI:6321976 /SEG=NC_001140:+468217,470574 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and cytoplasm /NOTE=Yhr182wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001225 // YHR182W SGDID:S0001225, Chr VIII from 468218-470575, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016705 // cdna:Genscan chromosome:SGD1:VIII:468218:470575:1 // ensembl // 11 // --- /// GENEFINDER00000020260 // cdna:GeneFinder chromosome:SGD1:VIII:468470:470575:1 // ensembl // 11 // --- /// YHR182W // cdna:known chromosome:SGD1:VIII:468218:470575:1 gene:YHR182W // ensembl // 11 // --- --- No cerevisiae_gene -1.37429477283237 -2.76140308476091 1.30176429695137 -1.90621322706226 1.11045659498302 Max fold change below threshold 4 2.76140308476091 Max fold change at or above threshold 0.69207253756122 -1.0687784338497 -0.620286216113248 0.99699211240173 164.597389221191 79.5746558808144 0.483450291996305 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770059_at YKL219W.S1 Protein of unknown function, member of a family of conserved, often subtelomerically-encoded proteins 2.7607997148248 25.4216823577881 58.9350032806396 COS9 --- --- --- 51.6138343811035 18.6952476501465 32.1481170654297 66.2561721801758 0.000244141003349796 0.00805663969367743 0.00805663969367743 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL219W /GEN=COS9 /DB_XREF=GI:6322630 /SEG=NC_001143:+14485,15708 /DEF=Protein of unknown function, member of a family of conserved, often subtelomerically-encoded proteins /NOTE=Cos9p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001702 // span:67-89,99-121,261-281,286-303 // numtm:4 S0001702 // COS9 SGDID:S0001702, Chr XI from 14485-15708, Verified ORF // sgd // 11 // --- /// GENSCAN00000018253 // cdna:Genscan chromosome:SGD1:XI:14560:15708:1 // ensembl // 11 // --- /// GENEFINDER00000023018 // cdna:GeneFinder chromosome:SGD1:XI:14560:15708:1 // ensembl // 11 // --- /// YKL219W // cdna:known chromosome:SGD1:XI:14485:15708:1 gene:YKL219W // ensembl // 11 // --- --- No cerevisiae_gene 1.00584223936027 -2.7607997148248 1.13063853849931 -1.60550100884777 1.28369017676457 Max fold change below threshold 4 2.7607997148248 Max fold change at or above threshold 0.449677792206746 -1.11916017523228 -0.478021705887004 1.14750408891254 42.1783428192139 20.9827830624812 0.497477654644191 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1777504_at YJL034W.S1 ATPase involved in protein import into the ER, also acts as a chaperone to mediate protein folding in the ER and may play a role in ER export of soluble proteins; regulates the unfolded protein response via interaction with Ire1p 2.75961568807258 7287.6845703125 3118.798828125 KAR2 742 // karyogamy during conjugation with cellular fusion // inferred from genetic interaction /// 742 // karyogamy during conjugation with cellular fusion // inferred from mutant phenotype /// 6616 // SRP-dependent cotranslational protein-membrane targeting, translocation // traceable author statement /// 6986 // response to unfolded protein // traceable author statement /// 31204 // posttranslational protein membrane targeting, translocation // traceable author statement 5788 // endoplasmic reticulum lumen // inferred from direct assay 16887 // ATPase activity // inferred from direct assay /// 51082 // unfolded protein binding // traceable author statement 3280.009765625 9051.56640625 5523.802734375 2957.587890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL034W /GEN=KAR2 /DB_XREF=GI:6322426 /SEG=NC_001142:+381243,383291 /DEF=ATPase involved in protein import into the ER, also acts as a chaperone to mediate protein folding in the ER and may play a role in ER export of soluble proteins; regulates the unfolded protein response via interaction with Ire1p /NOTE=Kar2p; go_component: endoplasmic reticulum lumen [goid GO:0005788] [evidence IDA] [pmid 9199165]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 1325440]; go_function: chaperone activity [goid GO:0003754] [evidence TAS] [pmid 10564637]; go_function: heat shock protein activity [goid GO:0003773] [evidence IEP,ISS] [pmid 2105497]; go_process: SRP-dependent cotranslational membrane targeting, translocation [goid GO:0006616] [evidence TAS] [pmid 10564637]; go_process: karyogamy during conjugation with cellular fusion [goid GO:0000742] [evidence IGI,IMP] [pmid 10069807]; go_process: response to unfolded protein [goid GO:0006986] [evidence TAS] [pmid 11118306] --- --- --- --- --- S0003571 // span:7-29 // numtm:1 S0003571 // KAR2 SGDID:S0003571, Chr X from 381243-383291, Verified ORF // sgd // 11 // --- /// GENSCAN00000024113 // cdna:Genscan chromosome:SGD1:X:381243:383291:1 // ensembl // 11 // --- /// GENEFINDER00000024419 // cdna:GeneFinder chromosome:SGD1:X:381243:383291:1 // ensembl // 11 // --- /// YJL034W // cdna:known chromosome:SGD1:X:381243:383291:1 gene:YJL034W // ensembl // 11 // --- --- No cerevisiae_gene 1.07917888606706 2.75961568807258 -1.19667579566053 1.68408118544807 -1.10901514576186 Max fold change below threshold 4 2.75961568807258 Max fold change at or above threshold -0.684918135586186 1.37049896969258 0.114160992600893 -0.799741826707285 5203.24169921875 2807.9734404284 0.539658467307027 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776428_at YNL311C.S1 F-box protein 2.75877061248112 204.73291015625 565.692718505859 --- 6511 // ubiquitin-dependent protein catabolism // inferred from sequence similarity 151 // ubiquitin ligase complex // inferred from sequence similarity 5515 // protein binding // inferred from sequence similarity 536.504943847656 214.993347167969 194.472473144531 594.880493164063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL311C /GEN=RFA2 /DB_XREF=GI:6324018 /SEG=NC_001146:-49396,51687 /DEF=F-box protein /NOTE=Ynl311cp; go_component: ubiquitin ligase complex [goid GO:0000151] [evidence ISS] [pmid 9635407]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 9635407]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence ISS] [pmid 9635407] --- --- --- --- --- --- S0005255 // YNL311C SGDID:S0005255, Chr XIV from 51687-49396, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019793 // cdna:Genscan chromosome:SGD1:XIV:49396:51687:-1 // ensembl // 11 // --- /// GENEFINDER00000020468 // cdna:GeneFinder chromosome:SGD1:XIV:49396:50118:-1 // ensembl // 11 // --- /// YNL311C // cdna:known chromosome:SGD1:XIV:49396:51687:-1 gene:YNL311C // ensembl // 11 // --- --- No cerevisiae_gene -1.05712259456152 -2.49544904953965 -1.19240617925465 -2.75877061248112 1.10880710417644 Max fold change below threshold 4 2.75877061248112 Max fold change at or above threshold 0.720693726999099 -0.810855809813317 -0.908608847122553 0.998770929936771 385.212814331055 209.925692216814 0.544960303517843 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777072_at SPAC328.02.S1 --- 2.75812355438564 --- --- --- --- 0.343457221984863 0.567084848880768 0.861506402492523 0.139305263757706 0.953857004642487 0.991943001747131 0.870360970497131 0.919921875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC328.02 /DEF=zinc finger protein --- --- --- --- --- --- SPAC328.02 // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.22394189061946 1.65110765644567 2.75812355438564 2.50833683890476 -2.46550067614272 Max fold change below threshold 0 2.75812355438564 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777761_at YBL054W.S1 Hypothetical protein 2.75803530322758 181.954147338867 396.37174987793 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 382.829406738281 138.805114746094 225.103179931641 409.914093017578 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL054W /GEN=PTC3 /DB_XREF=GI:6319417 /SEG=NC_001134:+117554,119131 /DEF=Hypothetical ORF /NOTE=Ybl054wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.1.Myb // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb // 0.550000011920929 --- S0000150 // YBL054W SGDID:S0000150, Chr II from 117592-119169, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021096 // cdna:Genscan chromosome:SGD1:II:117592:119169:1 // ensembl // 11 // --- /// GENEFINDER00000022260 // cdna:GeneFinder chromosome:SGD1:II:117592:119169:1 // ensembl // 11 // --- /// YBL054W // cdna:known chromosome:SGD1:II:117592:119169:1 gene:YBL054W // ensembl // 11 // --- --- No cerevisiae_gene 1.63604142482865 -2.75803530322758 -1.24793841600394 -1.70068413451351 1.07074870896167 Max fold change below threshold 4 2.75803530322758 Max fold change at or above threshold 0.7250633992148 -1.16390610145208 -0.4958807513067 0.934723453543984 289.162948608398 129.183817899673 0.446750935835219 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774321_at YIR032C.S1 Ureidoglycolate hydrolase, converts ureidoglycolate to glyoxylate and urea in the third step of allantoin degradation; expression sensitive to nitrogen catabolite repression 2.75755814954297 212.889228820801 86.2265815734863 DAL3 256 // allantoin catabolism // traceable author statement 16020 // membrane // inferred from sequence similarity 4848 // ureidoglycolate hydrolase activity // traceable author statement 79.7779846191406 205.786026000977 219.992431640625 92.675178527832 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR032C /GEN=DAL3 /DB_XREF=GI:6322223 /SEG=NC_001141:-415027,415614 /DEF=Ureidoglycolate hydrolase, converts ureidoglycolate to glyoxylate and urea in the third step of allantoin degradation; expression sensitive to nitrogen catabolite repression /NOTE=Dal3p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 1776360]; go_function: ureidoglycolate hydrolase activity [goid GO:0004848] [evidence TAS] [pmid 1776360]; go_process: allantoin catabolism [goid GO:0000256] [evidence TAS] [pmid 3915539] --- --- --- --- --- --- S0001471 // DAL3 SGDID:S0001471, Chr IX from 415614-415027, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016500 // cdna:Genscan chromosome:SGD1:IX:415027:415614:-1 // ensembl // 11 // --- /// YIR032C // cdna:known chromosome:SGD1:IX:415027:415614:-1 gene:YIR032C // ensembl // 11 // --- --- No cerevisiae_gene 2.58966381234543 2.57948388873694 1.06252158911163 2.75755814954297 1.1616635713507 Max fold change below threshold 4 2.75755814954297 Max fold change at or above threshold -0.948779317831354 0.764519042975478 0.957679822465819 -0.773419547609943 149.557905197144 73.547050685612 0.491763043810115 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779801_at YDR240C.S1 U1 snRNP protein, serine-rich; has no counterpart in mammalian U1 snRNP 2.75714362732639 76.8629341125488 239.45320892334 SNU56 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 243 // commitment complex // inferred from physical interaction /// 243 // commitment complex // traceable author statement /// 5685 // snRNP U1 // inferred from physical interaction /// 5685 // snRNP U1 // traceable author statement /// 5685 // snRNP U1 // inferred from direct assay 3729 // mRNA binding // inferred from physical interaction 210.303237915039 77.4501037597656 76.275764465332 268.603179931641 0.00122069998178631 0.0239257998764515 0.0239257998764515 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR240C /GEN=SNU56 /DB_XREF=GI:6320447 /SEG=NC_001136:-943666,945144 /DEF=Snurp = Small nuclear ribonucleoprotein particle of MW 56 kDa. Associated with the U1 snRNP; no counterpart in mammalian U1 snRNP. Serine-rich. /NOTE=Snu56p; go_component: commitment complex [goid GO:0000243] [evidence IPI,TAS] [pmid 10072386]; go_component: snRNP U1 [goid GO:0005685] [evidence IPI,TAS] [pmid 10072386]; go_component: snRNP U1 [goid GO:0005685] [evidence IDA] [pmid 11804584]; go_function: mRNA binding [goid GO:0003729] [evidence IPI] [pmid 10072386]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10072386] --- --- --- --- --- --- S0002648 // SNU56 SGDID:S0002648, Chr IV from 945146-943668, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025284 // cdna:Genscan chromosome:SGD1:IV:943668:945146:-1 // ensembl // 11 // --- /// YDR240C // cdna:known chromosome:SGD1:IV:943668:945146:-1 gene:YDR240C // ensembl // 11 // --- --- No cerevisiae_gene -1.45696593785774 -2.71533836245535 -1.22864671606298 -2.75714362732639 1.27721847078814 Max fold change below threshold 4 2.75714362732639 Max fold change at or above threshold 0.538450273406963 -0.833389368720719 -0.845515580177119 1.14045467549088 158.158071517944 96.8430493444717 0.612318096793966 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1770720_at YLR020C.S1 Steryl ester hydrolase, catalyzes steryl ester hydrolysis at the plasma membrane; involved in sterol metabolism 2.75712667599091 222.242317199707 511.446685791016 YEH2 32 // cell wall mannoprotein biosynthesis // inferred from mutant phenotype /// 16125 // sterol metabolism // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay /// 16021 // integral to membrane // inferred from direct assay 4771 // sterol esterase activity // inferred from direct assay /// 4771 // sterol esterase activity // inferred from mutant phenotype 471.076354980469 170.857711791992 273.626922607422 551.817016601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR020C /GEN=PSR2 /DB_XREF=GI:6323048 /SEG=NC_001144:-181788,183404 /DEF=Hypothetical ORF /NOTE=Ylr020cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall mannoprotein biosynthesis [goid GO:0000032] [evidence IMP] [pmid 14587103] --- --- --- --- --- S0004010 // span:12-31 // numtm:1 S0004010 // YLR020C SGDID:S0004010, Chr XII from 183404-181788, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017811 // cdna:Genscan chromosome:SGD1:XII:181788:183404:-1 // ensembl // 11 // --- /// GENEFINDER00000024737 // cdna:GeneFinder chromosome:SGD1:XII:181788:183404:-1 // ensembl // 11 // --- /// YLR020C // cdna:known chromosome:SGD1:XII:181788:183404:-1 gene:YLR020C // ensembl // 11 // --- --- No cerevisiae_gene 1.08854091964165 -2.75712667599091 1.111370457683 -1.72160089545111 1.17139612457187 Max fold change below threshold 4 2.75712667599091 Max fold change at or above threshold 0.59462618945526 -1.11807354516184 -0.531791500112777 1.05523885581936 366.844501495361 175.289711979546 0.477831100820691 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778042_at YMR060C.S1 Component of the mitochondrial outer membrane sorting and assembly machinery (SAM) complex; required for the sorting of some proteins to the outer membrane after import by the TOM complex 2.7571172577051 354.423904418945 981.557708740234 SAM37 7008 // outer mitochondrial membrane organization and biogenesis // inferred from direct assay /// 7008 // outer mitochondrial membrane organization and biogenesis // inferred from mutant phenotype 1401 // mitochondrial sorting and assembly machinery complex // inferred from direct assay 5515 // protein binding // inferred from mutant phenotype /// 5515 // protein binding // inferred from physical interaction 954.349365234375 362.70751953125 346.140289306641 1008.76605224609 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR060C /GEN=TOM37 /DB_XREF=GI:6323705 /SEG=NC_001145:-391531,392514 /DEF=Component of the mitochondrial outer membrane sorting and assembly machinery (SAM) complex; required for the sorting of some proteins to the outer membrane after import by the TOM complex /NOTE=Tom37p; go_component: mitochondrial sorting and assembly machinery complex [goid GO:0001401] [evidence IDA] [pmid 12891361]; go_function: protein binding [goid GO:0005515] [evidence IMP,IPI] [pmid 12891361]; go_process: outer mitochondrial membrane organization and biogenesis [goid GO:0007008] [evidence IDA,IMP] [pmid 12891361] --- --- --- --- --- --- S0004664 // TOM37 SGDID:S0004664, Chr XIII from 392514-391531, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018763 // cdna:Genscan chromosome:SGD1:XIII:391531:392514:-1 // ensembl // 11 // --- /// GENEFINDER00000021805 // cdna:GeneFinder chromosome:SGD1:XIII:391531:392397:-1 // ensembl // 11 // --- /// YMR060C // cdna:known chromosome:SGD1:XIII:391531:392514:-1 gene:YMR060C // ensembl // 11 // --- --- No cerevisiae_gene -1.10345640372405 -2.63118163766701 -1.17992033229013 -2.7571172577051 1.05701967119594 Max fold change below threshold 4 2.7571172577051 Max fold change at or above threshold 0.789258344231012 -0.841418474757878 -0.887080894477389 0.939241025004254 667.99080657959 362.819805134641 0.543150896031698 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770297_at YML093W.S1 Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA 2.75691876635792 283.335876464844 349.843719482422 UTP14 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction 30515 // snoRNA binding // inferred from physical interaction 336.253845214844 281.725738525391 284.946014404297 363.43359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML093W /GEN=UTP14 /DB_XREF=GI:6323546 /SEG=NC_001145:+83090,85789 /DEF=Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA /NOTE=Utp14p; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: snoRNA binding [goid GO:0030515] [evidence IPI] [pmid 12068309]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP,IPI] [pmid 12068309] --- --- --- --- --- --- S0004558 // UTP14 SGDID:S0004558, Chr XIII from 83090-85789, Verified ORF // sgd // 11 // --- /// GENSCAN00000018640 // cdna:Genscan chromosome:SGD1:XIII:83090:85789:1 // ensembl // 11 // --- /// GENEFINDER00000021933 // cdna:GeneFinder chromosome:SGD1:XIII:83090:85789:1 // ensembl // 11 // --- /// YML093W // cdna:known chromosome:SGD1:XIII:83090:85789:1 gene:YML093W // ensembl // 11 // --- --- No cerevisiae_gene 2.75691876635792 -1.19355031945205 -1.0921445813418 -1.18006158435944 1.08083104155371 Max fold change below threshold 4 2.75691876635792 Max fold change at or above threshold 0.491711437327229 -0.871796968959144 -0.791272015902243 1.17135754753416 316.589797973633 39.9910308129048 0.126318128596915 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771021_at SPAC6F12.11c.S1 --- 2.75681310258438 --- --- --- --- 0.915940880775452 0.545643448829651 0.682874202728271 0.468861013650894 0.799560546875 0.904784977436066 0.904784977436066 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F12.11c /GEN=sfc1 /DEF=transcription factor --- --- --- --- --- --- SPAC6F12.11c // |sfc1||transcription factor TFIIIC complex A box associated subunit|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- AB032716 // gb // 8 // Cross Hyb Matching Probes No No -2.75681310258438 -1.6786435954469 -1.72570083928222 -1.34130250801101 -1.95354455607914 Max fold change below threshold 0 2.75681310258438 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776740_at SPAC57A10.08c.S1 --- 2.75675711422842 --- --- --- --- 6.46009063720703 4.46712303161621 8.31744766235352 5.36448097229004 0.24609400331974 0.466064006090164 0.149657994508743 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC57A10.08c /DEF=esteraselipase (predicted) --- --- --- --- --- --- SPAC57A10.08c // |||esterase/lipase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.75675711422842 -1.44614119456427 1.21681341136622 1.28751253340766 -1.20423404809828 Max fold change below threshold 4 2.75675711422842 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769358_at YNL083W.S1 Probable transporter, member of the Ca2+-binding subfamily of the mitochondrial carrier family, with two EF-hand motifs; Pet9p and Sal1p have an overlapping function critical for viability; polymorphic in different S. cerevisiae strains 2.75674682121336 591.67805480957 1345.3505859375 SAL1 6810 // transport // inferred from sequence similarity 5743 // mitochondrial inner membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity /// 5509 // calcium ion binding // inferred from direct assay 1323.21887207031 479.992889404297 703.363220214844 1367.48229980469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL083W /GEN=END3 /DB_XREF=GI:42742308 /SEG=NC_001146:+471377,473014 /DEF=Hypothetical ORF /NOTE=Ynl083wp; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence ISS] [pmid 10930523]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 10930523]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 10930523] --- --- --- --- --- S0005027 // span:409-431,452-474 // numtm:2 S0005027 // SAL1 SGDID:S0005027, Chr XIV from 471377-473014, Verified ORF // sgd // 11 // --- /// GENSCAN00000019966 // cdna:Genscan chromosome:SGD1:XIV:471377:473014:1 // ensembl // 11 // --- /// GENEFINDER00000020444 // cdna:GeneFinder chromosome:SGD1:XIV:471377:473014:1 // ensembl // 11 // --- /// YNL083W // cdna:known chromosome:SGD1:XIV:471377:473014:1 gene:YNL083W // ensembl // 11 // --- --- No cerevisiae_gene 1.00792541639802 -2.75674682121336 1.22616422484935 -1.88127390520382 1.0334513274173 Max fold change below threshold 4 2.75674682121336 Max fold change at or above threshold 0.797173381090836 -1.09791734839082 -0.595908335549502 0.896652302849489 968.514320373535 444.9528297237 0.459417915010375 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780183_at YLR417W.S1 Component of the ESCRT-II complex, which is involved in ubiquitin-dependent sorting of proteins into the endosome 2.75589924177503 480.352813720703 237.746391296387 VPS36 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6623 // protein-vacuolar targeting // inferred from physical interaction /// 43162 // ubiquitin-dependent protein catabolism via the multivesicular body pathway // inferred from curator /// 45014 // negative regulation of transcription by glucose // inferred from mutant phenotype /// 45053 // protein-Golgi retention // inferred from mutant phenotype 814 // ESCRT II complex // inferred from direct assay 16299 // regulator of G-protein signaling activity // inferred from mutant phenotype 227.713302612305 516.141845703125 444.563781738281 247.779479980469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR417W /GEN=VPS36 /DB_XREF=GI:6323449 /SEG=NC_001144:+955006,956706 /DEF=Defective in vacuolar protein sorting /NOTE=Vps36p; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 12194858]; go_function: regulator of G-protein signaling activity [goid GO:0016299] [evidence IMP] [pmid 11940600]; go_process: negative regulation of transcription by glucose [goid GO:0045014] [evidence IMP] [pmid 11278625]; go_process: protein-Golgi retention [goid GO:0045053] [evidence IMP] [pmid 8649377]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP,IPI] [pmid 12194858] --- --- --- --- --- --- S0004409 // VPS36 SGDID:S0004409, Chr XII from 955006-956706, Verified ORF // sgd // 11 // --- /// GENSCAN00000018133 // cdna:Genscan chromosome:SGD1:XII:955006:956706:1 // ensembl // 11 // --- /// YLR417W // cdna:known chromosome:SGD1:XII:955006:956706:1 gene:YLR417W // ensembl // 11 // --- --- No cerevisiae_gene -2.75589924177503 2.26663018709051 1.28534768071579 1.95229605226523 1.08812035633389 Max fold change below threshold 4 2.75589924177503 Max fold change at or above threshold -0.916392117634246 1.09610285594102 0.596670683230782 -0.776381421537556 359.049602508545 143.318888681951 0.399161808509566 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-BioC-5_at AFFX-BioC-5 --- 2.75567582309454 --- --- --- --- 697.194519042969 708.338562011719 253.00309753418 276.61669921875 4.42872878920753E-5 5.16732470714487E-5 0.000146580772707239 6.02111176704057E-5 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --- --- --- --- --- --- J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioC protein corresponding to nucleotides 4609-4883 of J04423 /LEN=777 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// AFFX-BioC-5 // E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioC protein /LEN=777 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// AFFX-BioC-5 // --- // unknown // --- // --- /// AFFX-BioC-5 // --- // unknown // --- // --- /// AFFX-BioC-5 // --- // unknown // --- // --- /// AFFX-BioC-5 // --- // unknown // --- // --- /// AFFX-BioC-5 // --- // gb // --- // --- /// AFFX-BioC-5 // E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-BioC-5 // --- // unknown // --- // --- /// AFFX-BioC-5 // --- // affx // --- // --- /// AFFX-BioC-5 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-BioC-5 // --- // affx // --- // --- /// AFFX-BioC-5 // --- // affx // --- // --- /// AFFX-BioC-5 // --- // affx // --- // --- /// AFFX-BioC-5 // --- // affx // --- // --- /// AFFX-BioC-5 // --- // affx // --- // --- /// AFFX-BioC-5 // --- // affx // --- // --- /// AFFX-BioC-5 // --- // affx // --- // --- /// AFFX-BioC-5 // --- // affx // --- // --- /// AFFX-BioC-5 // --- // affx // --- // --- /// AFFX-BioC-5 // --- // affx // --- // --- /// AFFX-BioC-5 // --- // affx // --- // --- 957995 // gb // 6 // Cross Hyb Matching Probes /// 16445223 // gb // 6 // Cross Hyb Matching Probes /// 917590 // gb // 6 // Cross Hyb Matching Probes /// 15829254 // gb // 6 // Cross Hyb Matching Probes AFFX_control No -1.7245150457921 1.01598412303075 -1.95259032634182 -2.75567582309454 -2.52043539313447 Max fold change below threshold 4 2.75567582309454 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777153_at YPR112C.S1 Essential conserved protein that associates with 35S precursor rRNA and is required for its initial processing at the A(0)-A(2) cleavage sites, shows partial nucleolar localization, contains five consensus RNA-binding domains 2.75492784274581 250.686744689941 255.854026794434 MRD1 6365 // 35S primary transcript processing // inferred from mutant phenotype 5730 // nucleolus // inferred from direct assay 30515 // snoRNA binding // inferred from direct assay /// 42134 // rRNA primary transcript binding // inferred from direct assay 249.016799926758 221.678756713867 279.694732666016 262.691253662109 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR112C /GEN=MRD1 /DB_XREF=GI:6325369 /SEG=NC_001148:-749252,751915 /DEF=Essential conserved protein that associates with 35S precursor rRNA and is required for its initial processing at the A(0)-A(2) cleavage sites, shows partial nucleolar localization, contains five consensus RNA-binding domains /NOTE=Mrd1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11884397]; go_function: rRNA primary transcript binding [goid GO:0042134] [evidence IDA] [pmid 11884397]; go_function: snoRNA binding [goid GO:0030515] [evidence IDA] [pmid 11884397]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence IMP] [pmid 11884397] --- --- --- --- --- --- S0006316 // MRD1 SGDID:S0006316, Chr XVI from 751917-749254, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017267 // cdna:Genscan chromosome:SGD1:XVI:749254:751446:-1 // ensembl // 11 // --- /// GENEFINDER00000020916 // cdna:GeneFinder chromosome:SGD1:XVI:749254:751917:-1 // ensembl // 11 // --- /// YPR112C // cdna:known chromosome:SGD1:XVI:749254:751917:-1 gene:YPR112C // ensembl // 11 // --- --- No cerevisiae_gene 2.75492784274581 -1.1233227920354 -1.21678188252955 1.12319623715461 1.05491377987097 Max fold change below threshold 4 2.75492784274581 Max fold change at or above threshold -0.173501472244489 -1.28860551658145 1.0778348652924 0.384272123533542 253.270385742188 24.5161367243949 0.0967982760896124 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775394_at YBR042C.S1 Hypothetical protein 2.75492697379127 108.755279541016 323.389144897461 --- 8654 // phospholipid biosynthesis // inferred from sequence similarity 5811 // lipid particle // inferred from direct assay 8415 // acyltransferase activity // inferred from sequence similarity 295.661956787109 107.321159362793 110.189399719238 351.116333007813 0.00195312988944352 0.00292969006113708 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR042C /GEN=FAT1 /DB_XREF=GI:6319516 /SEG=NC_001134:-320378,321571 /DEF=Hypothetical ORF /NOTE=Ybr042cp; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 14562095]; go_function: acyltransferase activity [goid GO:0008415] [evidence ISS] [pmid 9259571]; go_process: phospholipid biosynthesis [goid GO:0008654] [evidence ISS] [pmid 9259571] --- --- --- --- --- S0000246 // span:15-37,58-80,119-138,374-396 // numtm:4 S0000246 // YBR042C SGDID:S0000246, Chr II from 321609-320416, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021173 // cdna:Genscan chromosome:SGD1:II:320416:321156:-1 // ensembl // 11 // --- /// GENEFINDER00000022352 // cdna:GeneFinder chromosome:SGD1:II:320416:321156:-1 // ensembl // 11 // --- /// YBR042C // cdna:known chromosome:SGD1:II:320416:321609:-1 gene:YBR042C // ensembl // 11 // --- --- No cerevisiae_gene -1.53456239811296 -2.75492697379127 -1.12806790308462 -2.68321596760173 1.18756006631125 Max fold change below threshold 4 2.75492697379127 Max fold change at or above threshold 0.631787993389467 -0.863272144372497 -0.840503886612706 1.07198803759574 216.072212219238 125.975399027262 0.583024525612949 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777172_at SPAC16E8.17c.S1 --- 2.75486765846462 --- --- --- --- 5.72385787963867 11.4685916900635 12.9726552963257 5.20652770996094 0.0676269978284836 0.149657994508743 0.0805663987994194 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16E8.17c /DEF=succinate-CoA ligase (alpha subunit) (predicted) --- --- --- --- --- --- SPAC16E8.17c // |||succinate-CoA ligase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.55978240223929 2.00364717839351 -2.75486765846462 2.26641813425749 -1.09936183930953 Max fold change below threshold 4 2.75486765846462 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776237_at SPBC16D10.11c.S1 --- 2.75452028191908 --- --- --- --- 2.53986978530884 2.25620460510254 3.25692510604858 6.99612283706665 0.274170011281967 0.665526986122131 0.303710997104645 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16D10.11c /GEN=rps1801 /DEF=40S ribosomal protein S18 --- --- --- --- --- --- SPBC16D10.11c // |rps1801|rps18-1|40S ribosomal protein S18|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.60102660418403 -1.1257267091667 1.9082985746907 1.28231971768291 2.75452028191908 Max fold change below threshold 3 2.75452028191908 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771027_at YPR163C.S1 Translation initiation factor eIF-4B, has RNA annealing activity; contains an RNA recognition motif and binds to single-stranded RNA 2.75439435483978 390.517608642578 528.472579956055 TIF3 6413 // translational initiation // traceable author statement 5840 // ribosome // traceable author statement 3743 // translation initiation factor activity // traceable author statement 480.712005615234 295.546112060547 485.489105224609 576.233154296875 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR163C /GEN=TIF3 /DB_XREF=GI:6325421 /SEG=NC_001148:-868639,869949 /DEF=Suppressor of translation mutants /NOTE=Tif3p; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 9841679]; go_function: translation initiation factor activity [goid GO:0003743] [evidence TAS] [pmid 9841679]; go_process: translational initiation [goid GO:0006413] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0006367 // TIF3 SGDID:S0006367, Chr XVI from 869951-868641, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017310 // cdna:Genscan chromosome:SGD1:XVI:868641:869951:-1 // ensembl // 11 // --- /// GENEFINDER00000020945 // cdna:GeneFinder chromosome:SGD1:XVI:868641:869951:-1 // ensembl // 11 // --- /// YPR163C // cdna:known chromosome:SGD1:XVI:868641:869951:-1 gene:YPR163C // ensembl // 11 // --- --- No cerevisiae_gene 2.75439435483978 -1.62652116200654 -1.24709303361243 1.00993755003739 1.19870764109457 Max fold change below threshold 4 2.75439435483978 Max fold change at or above threshold 0.180104478541397 -1.39171746131365 0.220655952847711 0.990957029924546 459.495094299316 117.803352186166 0.2563756471999 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774755_at YLR427W.S1 DNA-3-methyladenine glycosidase II that catalyzes of the hydrolysis of alkylated DNA 2.75339751665758 409.410614013672 794.121673583984 MAG2 6307 // DNA dealkylation // RCA 5737 // cytoplasm // inferred from direct assay 3905 // alkylbase DNA N-glycosylase activity // RCA 748.925048828125 343.675506591797 475.145721435547 839.318298339844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR427W /GEN=MAG2 /DB_XREF=GI:6323459 /SEG=NC_001144:+988424,990436 /DEF=Hypothetical ORF /NOTE=Mag2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: alkylbase DNA N-glycosylase activity [goid GO:0003905] [evidence TAS] [pmid 14566057]; go_process: DNA dealkylation [goid GO:0006307] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0004419 // MAG2 SGDID:S0004419, Chr XII from 988424-990436, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018144 // cdna:Genscan chromosome:SGD1:XII:988439:990436:1 // ensembl // 11 // --- /// GENEFINDER00000024845 // cdna:GeneFinder chromosome:SGD1:XII:988478:990436:1 // ensembl // 11 // --- /// YLR427W // cdna:known chromosome:SGD1:XII:988424:990436:1 gene:YLR427W // ensembl // 11 // --- --- No cerevisiae_gene -2.75339751665758 -2.17916329346585 -1.15640609398259 -1.57620076334775 1.12069732432259 Max fold change below threshold 4 2.75339751665758 Max fold change at or above threshold 0.635767505925778 -1.11502352295461 -0.547035533521709 1.02629155055054 601.766143798828 231.466540296063 0.384645335536595 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777117_at SPBC1198.05.S1 --- 2.75303906983682 --- --- --- --- 12.7792692184448 15.2471771240234 7.27671480178833 6.38086891174316 0.0561522990465164 0.00195312988944352 0.0561522990465164 0.0239257998764515 M P M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1198.05 /DEF=guanylate kinase (predicted) --- --- --- --- --- --- SPBC1198.05 // |||guanylate kinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -2.75303906983682 1.19311807767666 -1.76351880041027 -1.75618662631991 -2.00274749335882 Max fold change below threshold 4 2.75303906983682 Max fold change at or above threshold MPPAMP No 3 0 MPMP 0 2 2 No No 1 < x = 2
1778038_at YDR091C.S1 Essential iron-sulfur protein required for ribosome biogenesis and translation initiation; facilitates binding of a multifactor complex (MFC) of translation initiation factors to the small ribosomal subunit; predicted ABC family ATPase 2.75303634202473 876.206420898438 1015.16259765625 RLI1 54 // ribosome-nucleus export // inferred from mutant phenotype /// 6413 // translational initiation // inferred from mutant phenotype /// 42273 // ribosomal large subunit biogenesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5830 // cytosolic ribosome (sensu Eukaryota) // inferred from direct assay 5506 // iron ion binding // inferred from direct assay /// 16887 // ATPase activity // inferred from sequence similarity 965.3564453125 732.290283203125 1020.12255859375 1064.96875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR091C /GEN=RLI1 /DB_XREF=GI:6320296 /SEG=NC_001136:-626702,628528 /DEF=Strong protein homology (68% identical) to human RNase L Inhibitor (RLI). Required for vegetative growth and early sporulation. /NOTE=Rli1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence ISS] [pmid 10581358]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002498 // RLI1 SGDID:S0002498, Chr IV from 628529-626703, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023507 // cdna:GeneFinder chromosome:SGD1:IV:626703:628529:-1 // ensembl // 11 // --- /// GENSCAN00000025164 // cdna:Genscan chromosome:SGD1:IV:626703:628529:-1 // ensembl // 11 // --- /// YDR091C // cdna:known chromosome:SGD1:IV:626703:628529:-1 gene:YDR091C // ensembl // 11 // --- --- No cerevisiae_gene 2.75303634202473 -1.3182701825428 -1.03451108683185 1.05673149389242 1.10318707164715 Max fold change below threshold 4 2.75303634202473 Max fold change at or above threshold 0.132936863047997 -1.44205221876305 0.503029328168339 0.806086027546712 945.684509277344 147.97954144633 0.156478762203063 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776170_at YMR034C.S1 Hypothetical protein 2.7530060549866 599.577697753906 1187.91632080078 --- --- --- 15248 // sterol transporter activity // inferred from sequence similarity 1123.7509765625 596.419494628906 602.735900878906 1252.08166503906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR034C /GEN=ARP9 /DB_XREF=GI:6323677 /SEG=NC_001145:-339417,340721 /DEF=Hypothetical ORF /NOTE=Ymr034cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: sterol transporter activity [goid GO:0015248] [evidence ISS] [pmid 10543755]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004637 // span:24-43,53-70,82-104,119-141,148-170,190-212,233-255,265-287,329-351,361-383 // numtm:10 S0004637 // YMR034C SGDID:S0004637, Chr XIII from 340721-339417, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000021988 // cdna:GeneFinder chromosome:SGD1:XIII:339417:340493:-1 // ensembl // 11 // --- /// YMR034C // cdna:known chromosome:SGD1:XIII:339417:340721:-1 gene:YMR034C // ensembl // 11 // --- --- No cerevisiae_gene -2.7530060549866 -1.88416204815991 1.15607280131326 -1.86441686138797 1.11419851119429 Max fold change below threshold 4 2.7530060549866 Max fold change at or above threshold 0.669192616085071 -0.865069327760682 -0.846691851612833 1.04256856328844 893.747009277344 343.703683747636 0.384564849090286 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776351_at YBL029C-A.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery; has potential orthologs in Saccharomyces species and in Yarrowia lipolytica 2.75250094738434 4245.26818847656 1940.04156494141 --- --- --- --- 1906.33325195313 5247.18408203125 3243.35229492188 1973.74987792969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL029C-A /GEN=PET9 /DB_XREF=GI:13129152 /SEG=NC_001134:-164453,164737 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery; has potential orthologs in Saccharomyces species and in Yarrowia lipolytica /NOTE=Ybl029c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007591 // YBL029C-A SGDID:S0007591, Chr II from 164775-164491, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YBL029C-A // cdna:known chromosome:SGD1:II:164491:164775:-1 gene:YBL029C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.14165659517175 2.75250094738434 1.37022640276597 1.70135640848677 1.03536455439126 Max fold change below threshold 4 2.75250094738434 Max fold change at or above threshold -0.759256493858785 1.3789180406165 0.0964477010266395 -0.716109247784359 3092.65487670898 1562.47807473676 0.505222256289864 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770817_at YMR282C.S1 Mitochondrial protein, likely involved in translation of the mitochondrial OLI1 mRNA; exhibits genetic interaction with the OLI1 mRNA 5'-untranslated leader 2.7524311938067 100.40563583374 275.499366760254 AEP2 6412 // protein biosynthesis // traceable author statement 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay --- 242.888046264648 88.2449111938477 112.566360473633 308.110687255859 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR282C /GEN=AEP2 /DB_XREF=GI:6323938 /SEG=NC_001145:-833355,835097 /DEF=Mitochondrial protein, likely involved in translation of the mitochondrial OLI1 mRNA; exhibits genetic interaction with the OLI1 mRNA 5'-untranslated leader /NOTE=Aep2p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 8811190]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 8811190]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 8811190] --- --- --- --- --- --- S0004895 // AEP2 SGDID:S0004895, Chr XIII from 835097-833355, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018951 // cdna:Genscan chromosome:SGD1:XIII:833355:835097:-1 // ensembl // 11 // --- /// GENEFINDER00000021948 // cdna:GeneFinder chromosome:SGD1:XIII:833355:834767:-1 // ensembl // 11 // --- /// YMR282C // cdna:known chromosome:SGD1:XIII:833355:835097:-1 gene:YMR282C // ensembl // 11 // --- --- No cerevisiae_gene -1.72634689268294 -2.7524311938067 1.23419536646486 -2.15773207237647 1.26852964563001 Max fold change below threshold 4 2.7524311938067 Max fold change at or above threshold 0.523151558148822 -0.949516040160196 -0.717902717772122 1.1442671997835 187.952501296997 105.008852811299 0.558698884487666 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771115_at SPAC607.07c.S1 --- 2.75188630680821 --- --- --- --- 8.96496295928955 3.90003228187561 9.23455715179443 3.42170405387878 0.0952147990465164 0.149657994508743 0.00292969006113708 0.0239257998764515 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC607.07c /DEF=hypothetical protein --- --- --- --- --- --- SPAC607.07c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.3520664782493 -2.29868942391885 -2.75188630680821 1.03007198063496 -2.62002873951855 Max fold change below threshold 4 2.75188630680821 Max fold change at or above threshold APAAPP No 3 0 AAPP 2 2 0 No No 1 < x = 2
1775948_at YBR166C.S1 Prephenate dehydrogenase involved in tyrosine biosynthesis, expression is dependent on phenylalanine levels 2.75176012312889 334.683990478516 984.035949707031 TYR1 6570 // tyrosine metabolism // non-traceable author statement 5737 // cytoplasm // inferred from direct assay 8977 // prephenate dehydrogenase activity // inferred from sequence similarity 908.403564453125 330.117279052734 339.250701904297 1059.66833496094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR166C /GEN=TYR1 /DB_XREF=GI:6319643 /SEG=NC_001134:-569799,571157 /DEF=Step of tyrosine biosynthesis pathway /NOTE=Tyr1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: prephenate dehydrogenase activity [goid GO:0008977] [evidence ISS] [pmid 2697638]; go_process: tyrosine metabolism [goid GO:0006570] [evidence NAS] [pmid 11752249] --- --- --- --- --- --- S0000370 // TYR1 SGDID:S0000370, Chr II from 571195-569837, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000021273 // cdna:Genscan chromosome:SGD1:II:569837:571195:-1 // ensembl // 10 // --- /// GENEFINDER00000022191 // cdna:GeneFinder chromosome:SGD1:II:569837:571195:-1 // ensembl // 9 // --- /// YBR166C // cdna:known chromosome:SGD1:II:569837:571195:-1 gene:YBR166C // ensembl // 10 // --- --- No cerevisiae_gene 1.09576764106631 -2.75176012312889 -1.2459478168536 -2.67767630060611 1.16651714769402 Max fold change below threshold 4 2.75176012312889 Max fold change at or above threshold 0.655423125579909 -0.866487950392983 -0.842450967759524 1.0535157925726 659.359970092773 379.97376754139 0.57627666946164 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780053_at YMR195W.S1 Protein that interacts with the cytoskeleton and is involved in chromatin organization and nuclear transport, interacts genetically with TCP1 and ICY2, required for viability in rich media of cells lacking mitochondrial DNA 2.75135707698826 2948.71374511719 1129.33935546875 ICY1 --- 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay --- 1077.52197265625 2964.64770507813 2932.77978515625 1181.15673828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR195W /GEN=ICY1 /DB_XREF=GI:6323851 /SEG=NC_001145:+654033,654416 /DEF=Protein that interacts with the cytoskeleton and is involved in chromatin organization and nuclear transport, interacts genetically with TCP1 and ICY2, required for viability in rich media of cells lacking mitochondrial DNA /NOTE=Icy1p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004808 // ICY1 SGDID:S0004808, Chr XIII from 654033-654416, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018877 // cdna:Genscan chromosome:SGD1:XIII:654033:654416:1 // ensembl // 11 // --- /// YMR195W // cdna:known chromosome:SGD1:XIII:654033:654416:1 gene:YMR195W // ensembl // 11 // --- --- No cerevisiae_gene 2.11760155703031 2.75135707698826 2.5501197454192 2.72178188434201 1.0961787956579 Max fold change below threshold 4 2.75135707698826 Max fold change at or above threshold -0.914544105457163 0.880413250944558 0.850101779740368 -0.815970925227762 2039.02655029297 1051.34850457112 0.515612954828891 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774105_at SPAC29A4.04c.S1 --- 2.75130699251099 --- --- --- --- 1.34896278381348 1.27760326862335 1.4586683511734 0.504503667354584 0.828612983226776 0.888427972793579 0.919434010982513 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29A4.04c /DEF=TruB family --- --- --- --- --- --- SPAC29A4.04c // |||pseudouridylate synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.75126275278754 -1.05585420524715 -2.75130699251099 1.08132586656675 -2.67384138332809 Max fold change below threshold 0 2.75130699251099 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769381_at SPBC21H7.05.S1 --- 2.75109514066928 --- --- --- --- 0.597722411155701 1.6058531999588 0.876794338226318 0.217267081141472 0.919434010982513 0.828612983226776 0.665526986122131 0.981445014476776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21H7.05 /GEN=sfc6 /DEF=transcription factor (associated_with) --- --- --- --- --- --- SPBC21H7.05 // |sfc6||transcription factor TFIIIC complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.48512489719356 2.68662036086931 -1.21526180234002 1.46689219253304 -2.75109514066928 Max fold change below threshold 0 2.75109514066928 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778335_at YMR009W.S1 Acireductone dioxygenease involved in the methionine salvage pathway; ortholog of human MTCBP-1 2.75098222198707 1951.25732421875 795.315246582031 --- 19509 // methionine salvage // inferred from genetic interaction /// 19509 // methionine salvage // inferred from sequence similarity /// 19509 // methionine salvage // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 16702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from genetic interaction /// 16702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from mutant phenotype /// 16702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from sequence similarity 759.069702148438 2088.18725585938 1814.32739257813 831.560791015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR009W /GEN=PLB1 /DB_XREF=GI:6323651 /SEG=NC_001145:+284101,284640 /DEF=Hypothetical ORF /NOTE=Ymr009wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004611 // YMR009W SGDID:S0004611, Chr XIII from 284101-284640, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018724 // cdna:Genscan chromosome:SGD1:XIII:284101:284640:1 // ensembl // 11 // --- /// GENEFINDER00000021817 // cdna:GeneFinder chromosome:SGD1:XIII:284101:284640:1 // ensembl // 11 // --- /// YMR009W // cdna:known chromosome:SGD1:XIII:284101:284640:1 gene:YMR009W // ensembl // 11 // --- --- No cerevisiae_gene -1.26078197569918 2.75098222198707 1.45384372800343 2.39019867008647 1.0954999108277 Max fold change below threshold 4 2.75098222198707 Max fold change at or above threshold -0.906819826023122 1.05546869187908 0.651146242197599 -0.799795108053558 1373.28628540039 677.330342396254 0.493218602411641 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775296_at SPAC18G6.14c.S1 --- 2.75093103349123 --- --- --- --- 0.883873403072357 0.701651096343994 0.842348873615265 0.321299731731415 0.870360970497131 0.994140982627869 0.919434010982513 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18G6.14c /GEN=rps7 /DEF=40S ribosomal protein S7 --- --- --- --- --- --- SPAC18G6.14c // |rps7||40S ribosomal protein S7|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.24197016578436 -1.25970501247393 -1.2698683806354 -1.0492961179836 -2.75093103349123 Max fold change below threshold 0 2.75093103349123 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778470_at YNL290W.S1 Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon 2.7504987558461 141.402648925781 235.867881774902 RFC3 6272 // leading strand elongation // inferred from direct assay /// 6298 // mismatch repair // traceable author statement /// 7062 // sister chromatid cohesion // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5663 // DNA replication factor C complex // inferred from direct assay 3689 // DNA clamp loader activity // inferred from direct assay /// 16887 // ATPase activity // inferred from direct assay 220.530731201172 80.1784515380859 202.626846313477 251.205032348633 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL290W /GEN=RFC3 /DB_XREF=GI:6324039 /SEG=NC_001146:+86216,87238 /DEF=RFC is a DNA binding protein and ATPase that acts as a processivity factor for DNA polymerases delta and epsilon and loads proliferating cell nuclear antigen (PCNA) on DNA /NOTE=Rfc3p; go_component: DNA replication factor C complex [goid GO:0005663] [evidence IDA] [pmid 7651383]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 8302859]; go_function: DNA clamp loader activity [goid GO:0003689] [evidence IDA] [pmid 12604797]; go_process: leading strand elongation [goid GO:0006272] [evidence IDA] [pmid 1346062]; go_process: mismatch repair [goid GO:0006298] [evidence TAS] [pmid 10072354]; go_process: sister chromatid cohesion [goid GO:0007062] [evidence IPI] [pmid 11389843] --- --- --- --- --- --- S0005234 // RFC3 SGDID:S0005234, Chr XIV from 86216-87238, Verified ORF // sgd // 11 // --- /// GENSCAN00000019808 // cdna:Genscan chromosome:SGD1:XIV:86216:87238:1 // ensembl // 11 // --- /// GENEFINDER00000020566 // cdna:GeneFinder chromosome:SGD1:XIV:86216:87238:1 // ensembl // 11 // --- /// YNL290W // cdna:known chromosome:SGD1:XIV:86216:87238:1 gene:YNL290W // ensembl // 11 // --- --- No cerevisiae_gene 1.7435202081936 -2.7504987558461 -1.35257093914325 -1.08835889820837 1.13909309138181 Max fold change below threshold 4 2.7504987558461 Max fold change at or above threshold 0.42507214922933 -1.44540829600522 0.186466359166254 0.833869787609633 188.635265350342 75.0354167137452 0.397780428672158 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777163_at SPAC31A2.10.S1 --- 2.74923706594316 --- --- --- --- 0.231490895152092 0.351998120546341 0.404248744249344 0.636423349380493 0.888427972793579 0.985840022563934 0.951416015625 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31A2.10 /DEF=RanGTP-binding protein (predicted) --- --- --- --- --- --- SPAC31A2.10 // |||RanGTP-binding protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.22460205199062 1.5205700436515 -1.09761875003047 1.74628355894407 2.74923706594316 Max fold change below threshold 0 2.74923706594316 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778132_at SPAC30C2.04.S1 --- 2.7490331283603 --- --- --- --- 1.29521214962006 2.47879552841187 1.37065505981445 0.471151888370514 0.823486328125 0.888427972793579 0.828612983226776 0.981445014476776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30C2.04 /DEF=cofactor for methionyl-and glutamyl-tRNA synthetases (predicted) --- --- --- --- --- --- SPAC30C2.04 // |||cofactor for methionyl-and glutamyl-tRNA synthetases |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.26634732026887 1.91381429608965 -2.3209955582899 1.05824753127627 -2.7490331283603 Max fold change below threshold 0 2.7490331283603 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776927_at YGL147C.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl9Ap and has similarity to E. coli L6 and rat L9 ribosomal proteins /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl9Bp and has similarity to E. coli L6 and rat L9 ribosomal proteins 2.74834583302482 1135.21398925781 2848.36340332031 RPL9B /// RPL9A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 2999.54638671875 1091.40063476563 1179.02734375 2697.18041992188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL147C /GEN=RPL9A /DB_XREF=GI:6321291 /SEG=NC_001139:-227757,228332 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl9Bp and has similarity to E. coli L6 and rat L9 ribosomal proteins /NOTE=Rpl9ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0003115 // RPL9A SGDID:S0003115, Chr VII from 228334-227759, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019238 // cdna:Genscan chromosome:SGD1:VII:227759:228334:-1 // ensembl // 11 // --- /// GENEFINDER00000021758 // cdna:GeneFinder chromosome:SGD1:VII:227759:228334:-1 // ensembl // 11 // --- /// YGL147C // cdna:known chromosome:SGD1:VII:227759:228334:-1 gene:YGL147C // ensembl // 11 // --- --- No cerevisiae_gene 1.34775611416505 -2.74834583302482 -1.68963662093084 -2.54408551474169 -1.11210446455993 Max fold change below threshold 4 2.74834583302482 Max fold change at or above threshold 1.01038258417071 -0.902733290946766 -0.814878341779118 0.707229048555177 1991.78869628906 997.402079388399 0.500756973491554 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779071_at YOR077W.S1 Basic zinc-finger protein, similar to human and mouse Kin17 proteins which are chromatin-associated proteins involved in UV response and DNA replication 2.74805333911375 109.635375976563 98.8170013427734 RTS2 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 88.8360061645508 82.8268585205078 136.443893432617 108.797996520996 0.000244141003349796 0.00292969006113708 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR077W /GEN=RTS2 /DB_XREF=GI:6324651 /SEG=NC_001147:+471900,472598 /DEF=Basic zinc-finger protein, similar to human and mouse Kin17 proteins which are chromatin-associated proteins involved in UV response and DNA replication /NOTE=Rts2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005603 // RTS2 SGDID:S0005603, Chr XV from 471900-472598, Verified ORF // sgd // 10 // --- /// GENSCAN00000017518 // cdna:Genscan chromosome:SGD1:XV:471900:472598:1 // ensembl // 10 // --- /// GENEFINDER00000022735 // cdna:GeneFinder chromosome:SGD1:XV:471900:472598:1 // ensembl // 10 // --- /// YOR077W // cdna:known chromosome:SGD1:XV:471900:472598:1 gene:YOR077W // ensembl // 10 // --- --- No cerevisiae_gene 2.74805333911375 -1.07255071303417 1.06670163200292 1.53590755959788 1.22470607604162 Max fold change below threshold 4 2.74805333911375 Max fold change at or above threshold -0.636546801053408 -0.885088604315764 1.33254280233587 0.1890926030333 104.226188659668 24.1776134443662 0.231972537375553 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780122_at YOR067C.S1 Glucosyl transferase, involved in N-linked glycosylation; adds glucose to the dolichol-linked oligosaccharide precursor prior to transfer to protein during lipid-linked oligosaccharide biosynthesis; similar to Alg6p 2.74794801647188 402.892364501953 1041.57342529297 ALG8 6487 // N-linked glycosylation // inferred from mutant phenotype /// 6488 // dolichol-linked oligosaccharide biosynthesis // traceable author statement /// 6490 // oligosaccharide-lipid intermediate assembly // inferred from mutant phenotype 5789 // endoplasmic reticulum membrane // inferred from sequence similarity /// 5789 // endoplasmic reticulum membrane // inferred from mutant phenotype 42283 // dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase activity // inferred from mutant phenotype 1024.134765625 372.690734863281 433.093994140625 1059.01208496094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR067C /GEN=ALG8 /DB_XREF=GI:6324641 /SEG=NC_001147:-451730,453463 /DEF=adds glucose to the dolichol-linked oligosaccharide precursor prior to transfer to protein /NOTE=Alg8p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IMP,ISS] [pmid 8016100]; go_function: oligosaccharyl transferase activity [goid GO:0004576] [evidence IMP] [pmid 3536907]; go_process: dolichol-linked oligosaccharide biosynthesis [goid GO:0006488] [evidence TAS] [pmid 10336995]; go_process: oligosaccharide-lipid intermediate assembly [goid GO:0006490] [evidence IMP] [pmid 3536907] --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 3.29999995231628 S0005593 // span:42-64,135-157,169-184,189-206,227-244,264-286,383-405,420-442,449-468,473-491,511-529,549-571 // numtm:12 S0005593 // ALG8 SGDID:S0005593, Chr XV from 453463-451730, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022704 // cdna:GeneFinder chromosome:SGD1:XV:451730:453436:-1 // ensembl // 11 // --- /// YOR067C // cdna:known chromosome:SGD1:XV:451730:453463:-1 gene:YOR067C // ensembl // 11 // --- --- No cerevisiae_gene -1.36422784004912 -2.74794801647188 1.20951231699014 -2.36469399132897 1.03405540023305 Max fold change below threshold 4 2.74794801647188 Max fold change at or above threshold 0.816302893049457 -0.945115960331906 -0.781793503339875 0.910606570622325 722.232894897461 369.840500748106 0.512079279912354 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771514_at YOR349W.S1 Tubulin folding factor D involved in beta-tubulin (Tub2p) folding; isolated as mutant with increased chromosome loss and sensitivity to benomyl 2.74779068950104 830.508087158203 358.56965637207 CIN1 7023 // post-chaperonin tubulin folding pathway // traceable author statement /// 7025 // beta-tubulin folding // traceable author statement --- 48487 // beta-tubulin binding // non-traceable author statement 336.039855957031 923.3671875 737.648986816406 381.099456787109 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR349W /GEN=CIN1 /DB_XREF=GI:6324925 /SEG=NC_001147:+989784,992828 /DEF=Tubulin folding factor D involved in beta-tubulin (Tub2p) folding; isolated as mutant with increased chromosome loss and sensitivity to benomyl /NOTE=Cin1p; go_component: microtubule [goid GO:0005874] [evidence IC] [pmid 9885248]; go_function: co-chaperone activity [goid GO:0003767] [evidence TAS] [pmid 9885248]; go_process: beta-tubulin folding [goid GO:0007025] [evidence TAS] [pmid 9885248]; go_process: post-chaperonin tubulin folding pathway [goid GO:0007023] [evidence TAS] [pmid 9885248] --- --- --- --- --- --- S0005876 // CIN1 SGDID:S0005876, Chr XV from 989784-992828, Verified ORF // sgd // 11 // --- /// GENSCAN00000017802 // cdna:Genscan chromosome:SGD1:XV:989784:992828:1 // ensembl // 11 // --- /// GENEFINDER00000022584 // cdna:GeneFinder chromosome:SGD1:XV:989784:992828:1 // ensembl // 11 // --- /// YOR349W // cdna:known chromosome:SGD1:XV:989784:992828:1 gene:YOR349W // ensembl // 11 // --- --- No cerevisiae_gene 1.18118153317022 2.74779068950104 1.04662959705046 2.19512350615556 1.13409004923464 Max fold change below threshold 4 2.74779068950104 Max fold change at or above threshold -0.912059123049005 1.16020118817573 0.504933783306924 -0.753075848433649 594.538871765137 283.423529544823 0.476711520482021 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778364_at YOL141W.S1 Putative carboxyl methyl transferase, has similarity to Ppm1p but biochemical activity not yet demonstrated 2.74698629918997 46.511438369751 40.5289726257324 PPM2 --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 3880 // C-terminal protein carboxyl methyltransferase activity // inferred from sequence similarity 34.0401229858398 44.578556060791 48.4443206787109 47.017822265625 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL141W /GEN=PPM2 /DB_XREF=GI:6324431 /SEG=NC_001147:+56450,58537 /DEF=Putative carboxyl methyl transferase, has similarity to Ppm1p but biochemical activity not yet demonstrated /NOTE=Ppm2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: C-terminal protein carboxyl methyltransferase activity [goid GO:0003880] [evidence ISS] [pmid 11697862]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005501 // PPM2 SGDID:S0005501, Chr XV from 56450-58537, Verified ORF // sgd // 11 // --- /// GENSCAN00000017357 // cdna:Genscan chromosome:SGD1:XV:56450:58537:1 // ensembl // 11 // --- /// GENEFINDER00000022807 // cdna:GeneFinder chromosome:SGD1:XV:56618:58537:1 // ensembl // 11 // --- /// YOL141W // cdna:known chromosome:SGD1:XV:56450:58537:1 gene:YOL141W // ensembl // 11 // --- --- No cerevisiae_gene 2.74698629918997 1.30958857226618 1.54215258868411 1.42315351501118 1.38124713254367 Max fold change below threshold 4 2.74698629918997 Max fold change at or above threshold -1.45433624382053 0.16236120103154 0.755406840334955 0.536568202454033 43.5202054977417 6.51849429743823 0.149780871273149 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775664_at YGL213C.S1 Protein involved in exosome mediated 3' to 5' mRNA degradation and translation inhibition of non-poly(A) mRNAs as well as double-strand break formation during meiotic recombination; required for repressing propagation of dsRNA viruses 2.74613971960894 239.700866699219 576.693634033203 SKI8 6402 // mRNA catabolism // inferred from mutant phenotype /// 6402 // mRNA catabolism // traceable author statement /// 6461 // protein complex assembly // inferred from mutant phenotype /// 42138 // meiotic DNA double-strand break formation // inferred from physical interaction /// 43330 // response to exogenous dsRNA // inferred from mutant phenotype 228 // nuclear chromosome // inferred from direct assay /// 5737 // cytoplasm // inferred from physical interaction 30371 // translation repressor activity // traceable author statement 540.951477050781 196.986145019531 282.415588378906 612.435791015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL213C /GEN=SKI8 /DB_XREF=GI:6321225 /SEG=NC_001139:-90057,91250 /DEF=essential for protection against viral cytopathology, dispensable for mitotic but required for meiotic recombination and spore viability /NOTE=Ski8p; go_component: cytoplasm [goid GO:0005737] [evidence IPI] [pmid 10744028]; go_component: nuclear chromosome [goid GO:0000228] [evidence IDA] [pmid 14992724]; go_function: translation repressor activity [goid GO:0030371] [evidence TAS] [pmid 7739558]; go_process: mRNA catabolism [goid GO:0006402] [evidence IMP] [pmid 9482746]; go_process: mRNA catabolism [goid GO:0006402] [evidence TAS] [pmid 9841679]; go_process: meiotic DNA double-strand break formation [goid GO:0042138] [evidence IPI] [pmid 14992724]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP] [pmid 14992724] --- --- --- --- --- --- S0003181 // SKI8 SGDID:S0003181, Chr VII from 91251-90058, reverse complement, Verified ORF // sgd // 11 // --- /// M96058 // Saccharomyces cerevisiae antiviral protein (SKI8) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000019187 // cdna:Genscan chromosome:SGD1:VII:90058:91251:-1 // ensembl // 11 // --- /// GENEFINDER00000021388 // cdna:GeneFinder chromosome:SGD1:VII:90058:91251:-1 // ensembl // 11 // --- /// YGL213C // cdna:known chromosome:SGD1:VII:90058:91251:-1 gene:YGL213C // ensembl // 11 // --- YGL214W // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene 1.10767273962651 -2.74613971960894 1.2835476092664 -1.91544482426022 1.13214551951049 Max fold change below threshold 4 2.74613971960894 Max fold change at or above threshold 0.664413090242421 -1.05707687582964 -0.629516549671755 1.02218033525897 408.197250366211 199.806759731559 0.489485805091299 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773725_at YBR060C.S1 Subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing; may be phosphorylated by Cdc28p 2.74546045772512 266.358642578125 764.758850097656 ORC2 6267 // pre-replicative complex formation and maintenance // traceable author statement /// 6270 // DNA replication initiation // traceable author statement /// 30466 // chromatin silencing at silent mating-type cassette // traceable author statement 5656 // pre-replicative complex // traceable author statement /// 5664 // nuclear origin of replication recognition complex // traceable author statement 3688 // DNA replication origin binding // traceable author statement 722.223083496094 263.060821533203 269.656463623047 807.294616699219 0.000244141003349796 0.00195312988944352 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR060C /GEN=ORC2 /DB_XREF=GI:6319534 /SEG=NC_001134:-360612,362474 /DEF=Subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing; may be phosphorylated by Cdc28p /NOTE=Orc2p; go_component: nuclear origin of replication recognition complex [goid GO:0005664] [evidence TAS] [pmid 9442876]; go_function: DNA replication origin binding [goid GO:0003688] [evidence TAS] [pmid 9442876]; go_process: DNA replication initiation [goid GO:0006270] [evidence TAS] [pmid 9442876]; go_process: chromatin silencing at silent mating-type cassette (sensu Fungi) [goid GO:0030466] [evidence TAS] [pmid 9442876]; go_process: pre-replicative complex formation and maintenance [goid GO:0006267] [evidence TAS] [pmid 9442876] --- --- --- --- --- --- S0000264 // ORC2 SGDID:S0000264, Chr II from 362512-360650, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021188 // cdna:Genscan chromosome:SGD1:II:360650:362512:-1 // ensembl // 11 // --- /// GENEFINDER00000022319 // cdna:GeneFinder chromosome:SGD1:II:360650:361195:-1 // ensembl // 10 // --- /// YBR060C // cdna:known chromosome:SGD1:II:360650:362512:-1 gene:YBR060C // ensembl // 11 // --- --- No cerevisiae_gene -1.10921472240814 -2.74546045772512 -1.17062634711428 -2.67830807314039 1.11779121319595 Max fold change below threshold 4 2.74546045772512 Max fold change at or above threshold 0.712998735592161 -0.871126114940537 -0.848370933591192 1.00649831293957 515.558746337891 289.852319284359 0.562210070808096 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772032_at YIR010W.S1 Essential component of the MIND kinetochore complex (Mtw1p Including Nnf1p-Nsl1p-Dsn1p) which joins kinetochore subunits contacting DNA to those contacting microtubules; important for chromosome segregation 2.74446692055054 248.013626098633 570.796569824219 DSN1 7059 // chromosome segregation // inferred from direct assay 776 // kinetochore // inferred from direct assay /// 818 // MIND complex // inferred from direct assay /// 922 // spindle pole // inferred from direct assay --- 546.038696289063 297.067413330078 198.959838867188 595.554443359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR010W /GEN=DSN1 /DB_XREF=GI:6322200 /SEG=NC_001141:+375428,377158 /DEF=Essential component of the MIND kinetochore complex (Mtw1p Including Nnf1p-Nsl1p-Dsn1p) which joins kinetochore subunits contacting DNA to those contacting microtubules; important for chromosome segregation /NOTE=Dsn1p; go_component: MIND complex [goid GO:0000818] [evidence IDA] [pmid 14633972]; go_component: kinetochore [goid GO:0000776] [evidence IDA] [pmid 14657030]; go_component: spindle pole [goid GO:0000922] [evidence IDA] [pmid 12455957]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromosome segregation [goid GO:0007059] [evidence IDA] [pmid 12455957] --- --- --- --- --- --- S0001449 // DSN1 SGDID:S0001449, Chr IX from 375428-377158, Verified ORF // sgd // 11 // --- /// GENSCAN00000016484 // cdna:Genscan chromosome:SGD1:IX:375428:377158:1 // ensembl // 11 // --- /// GENEFINDER00000019039 // cdna:GeneFinder chromosome:SGD1:IX:375428:377158:1 // ensembl // 11 // --- /// YIR010W // cdna:known chromosome:SGD1:IX:375428:377158:1 gene:YIR010W // ensembl // 11 // --- --- No cerevisiae_gene 1.41026947682717 -1.83809691600993 -1.25110529149146 -2.74446692055054 1.09068175462074 Max fold change below threshold 4 2.74446692055054 Max fold change at or above threshold 0.712809673760805 -0.586059280537284 -1.09788088958739 0.97113049636387 409.405097961426 191.683142579637 0.468199207909466 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770818_at YAL017W.S1 One of two (see also PSK2) PAS domain containing S/T protein kinases; coordinately regulates protein synthesis and carbohydrate metabolism and storage in response to a unknown metabolite that reflects nutritional status 2.74356845398254 1711.98675537109 1752.17071533203 PSK1 6468 // protein amino acid phosphorylation // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from sequence similarity /// 19318 // hexose metabolism // inferred from genetic interaction /// 19318 // hexose metabolism // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4674 // protein serine/threonine kinase activity // inferred from sequence similarity /// 4674 // protein serine/threonine kinase activity // inferred from mutant phenotype 1758.45104980469 1679.54418945313 1744.42932128906 1745.89038085938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL017W /GEN=PSK1 /DB_XREF=GI:6319302 /SEG=NC_001133:+120228,124298 /DEF=contains serine/threonine protein kinase domain and shows homology with the SNF1 serine/threonine protein kinase /NOTE=Psk1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence IMP,ISS] [pmid 12372297]; go_process: hexose metabolism [goid GO:0019318] [evidence IGI,IMP] [pmid 12372297]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IMP,ISS] [pmid 12372297] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-53 /// hanks // 2.2.11 // CaMK Group; CaMK II KIN1/SNF1/Nim1; YKL453 // 9.0E-66 --- --- S0000015 // PSK1 SGDID:S0000015, Chr I from 120226-124296, Verified ORF // sgd // 11 // --- /// GENSCAN00000020365 // cdna:Genscan chromosome:SGD1:I:120226:124296:1 // ensembl // 11 // --- /// GENEFINDER00000018222 // cdna:GeneFinder chromosome:SGD1:I:122038:124296:1 // ensembl // 11 // --- /// YAL017W // cdna:known chromosome:SGD1:I:120226:124296:1 gene:YAL017W // ensembl // 11 // --- --- No cerevisiae_gene -2.74356845398254 -1.04698111597603 1.10480012434372 -1.00803800322805 -1.00719442015548 Max fold change below threshold 4 2.74356845398254 Max fold change at or above threshold 0.741127188783976 -1.47635052603956 0.347081976895268 0.388141360360314 1732.07873535156 35.5840601346661 0.020544135441651 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779964_at SPAC3F10.12c.S1 --- 2.74329400512417 --- --- --- --- 1.51160907745361 0.805225014686584 4.14678812026978 2.99788808822632 0.665526986122131 0.696289002895355 0.274170011281967 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3F10.12c /DEF=DNA binding (predicted) --- --- --- --- --- --- SPAC3F10.12c // |||basic helix-loop-helix |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.19730373904612 -1.87725051989595 1.80263599524806 2.74329400512417 1.98324297792417 Max fold change below threshold 2 2.74329400512417 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773200_at SPCC970.01.S1 --- 2.74249365518679 --- --- --- --- 7.17268371582031 13.7628946304321 19.6710395812988 8.39595508575439 0.129638999700546 0.171387001872063 0.030273400247097 0.0239257998764515 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC970.01 /GEN=rad16 /DEF=ss DNA endonuclease --- --- --- --- --- --- SPCC970.01 // |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.01755567052487 1.91879290593509 1.91888810472505 2.74249365518679 1.1705458400788 Max fold change below threshold 4 2.74249365518679 Max fold change at or above threshold APAPPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1779577_at YBR196C-A.S1 Identified by fungal homology and RT-PCR 2.74193300678633 53.8776416778564 26.5082101821899 --- --- --- --- 21.9573440551758 55.0583572387695 52.6969261169434 31.0590763092041 0.00195312988944352 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR196C-A /GEN=PGI1 /DB_XREF=GI:33438769 /SEG=NC_001134:-613981,614130 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ybr196c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028534 // span:6-28 // numtm:1 S0028534 // YBR196C-A SGDID:S0028534, Chr II from 614168-614019, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YBR196C-A // cdna:known chromosome:SGD1:II:614019:614168:-1 gene:YBR196C-A // ensembl // 11 // --- --- No cerevisiae_gene 2.74193300678633 2.50751443801288 -1.07651293123158 2.39996813751806 1.41451881571637 Max fold change below threshold 4 2.74193300678633 Max fold change at or above threshold -1.12140624446763 0.914157146766247 0.768939756716925 -0.561690659015539 40.1929259300232 16.2613521770644 0.404582443322883 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772442_at YLR175W.S1 Component of box H/ACA small nucleolar ribonucleoprotein particles (snoRNPs), probable rRNA pseudouridine synthase, binds to snoRNP Nop10p and also interacts with ribosomal biogenesis protein Nop53p 2.74179006733337 1001.73332214355 1309.58685302734 CBF5 154 // rRNA modification // traceable author statement /// 6365 // 35S primary transcript processing // traceable author statement 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction 4730 // pseudouridylate synthase activity // traceable author statement 1335.80224609375 487.200775146484 1516.26586914063 1283.37145996094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR175W /GEN=CBF5 /DB_XREF=GI:6323204 /SEG=NC_001144:+506136,507587 /DEF=major low affinity 55 kDa Centromere/microtubule binding protein /NOTE=Cbf5p; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 9472021]; go_function: pseudouridylate synthase activity [goid GO:0004730] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: rRNA modification [goid GO:0000154] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0004165 // CBF5 SGDID:S0004165, Chr XII from 506136-507587, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024850 // cdna:GeneFinder chromosome:SGD1:XII:506136:507587:1 // ensembl // 11 // --- /// YLR175W // cdna:known chromosome:SGD1:XII:506136:507587:1 gene:YLR175W // ensembl // 11 // --- --- No cerevisiae_gene 2.38359420891662 -2.74179006733337 -1.29997764249228 1.13509755921926 -1.04085394429327 Max fold change below threshold 4 2.74179006733337 Max fold change at or above threshold 0.394471110512856 -1.46377666113237 0.78964615659844 0.279659394021075 1155.66008758545 456.667557414017 0.395157332436862 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778833_at YJR089W.S1 Protein involved in cell cycle regulation and chromosome segregation, contains BIR (Baculovirus Inhibitor of apoptosis Repeat) domain 2.7417479551608 258.434005737305 715.707061767578 BIR1 7059 // chromosome segregation // inferred from mutant phenotype 778 // condensed nuclear chromosome kinetochore // inferred from genetic interaction /// 778 // condensed nuclear chromosome kinetochore // inferred from physical interaction /// 5739 // mitochondrion // inferred from direct assay --- 707.928894042969 258.203491210938 258.664520263672 723.485229492188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR089W /GEN=BIR1 /DB_XREF=GI:6322548 /SEG=NC_001142:+587632,590496 /DEF=Protein involved in cell cycle regulation and chromosome segregation, contains BIR (Baculovirus Inhibitor of apoptosis Repeat) domain /NOTE=Bir1p; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IGI,IPI] [pmid 10557299]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromosome segregation [goid GO:0007059] [evidence IMP] [pmid 10557299] --- --- --- --- --- --- S0003849 // BIR1 SGDID:S0003849, Chr X from 587632-590496, Verified ORF // sgd // 11 // --- /// GENSCAN00000024201 // cdna:Genscan chromosome:SGD1:X:587770:590496:1 // ensembl // 11 // --- /// GENEFINDER00000024339 // cdna:GeneFinder chromosome:SGD1:X:587770:590496:1 // ensembl // 11 // --- /// YJR089W // cdna:known chromosome:SGD1:X:587632:590496:1 gene:YJR089W // ensembl // 11 // --- --- No cerevisiae_gene -2.23815548482067 -2.7417479551608 -1.1467878007329 -2.73686121823486 1.02197443215007 Max fold change below threshold 4 2.7417479551608 Max fold change at or above threshold 0.83632124159504 -0.86664760585341 -0.864901833634115 0.895228197892486 487.070533752441 264.083164824684 0.542186698895867 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776572_at SPCC1620.07c.S1 --- 2.74173557738239 --- --- --- --- 8.82438278198242 10.5578508377075 24.1941242218018 10.4552536010742 0.0561522990465164 0.0107421996071935 0.00805663969367743 0.0805663987994194 M P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1620.07c /DEF=sequence orphan --- --- --- --- --- --- SPCC1620.07c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.14098692580562 1.19644071416128 1.58220664006927 2.74173557738239 1.1848141518092 Max fold change below threshold 4 2.74173557738239 Max fold change at or above threshold MAPPPA No 4 0 MPPA 1 2 1 No No 1 < x = 2
1773750_at YLR355C.S1 Acetohydroxyacid reductoisomerase, mitochondrial protein involved in branched-chain amino acid biosynthesis, also required for maintenance of wild-type mitochondrial DNA 2.7415054374788 1427.71942138672 3235.84838867188 ILV5 2 // mitochondrial genome maintenance // inferred from mutant phenotype /// 9082 // branched chain family amino acid biosynthesis // traceable author statement 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay /// 42645 // mitochondrial nucleoid // inferred from direct assay 4455 // ketol-acid reductoisomerase activity // traceable author statement 3385.68994140625 1234.97473144531 1620.46411132813 3086.0068359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR355C /GEN=ILV5 /DB_XREF=GI:6323387 /SEG=NC_001144:-838065,839252 /DEF=Acetohydroxyacid reductoisomerase, mitochondrial protein involved in branched-chain amino acid biosynthesis, also required for maintenance of wild-type mitochondrial DNA /NOTE=Ilv5p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 10675346]; go_function: ketol-acid reductoisomerase activity [goid GO:0004455] [evidence TAS] [pmid 7621838]; go_process: branched chain family amino acid biosynthesis [goid GO:0009082] [evidence TAS] [pmid 10675346]; go_process: mitochondrial genome maintenance [goid GO:0000002] [evidence IMP] [pmid 7621838] --- --- --- --- --- --- S0004347 // ILV5 SGDID:S0004347, Chr XII from 839252-838065, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018090 // cdna:Genscan chromosome:SGD1:XII:838065:839252:-1 // ensembl // 11 // --- /// GENEFINDER00000024605 // cdna:GeneFinder chromosome:SGD1:XII:838065:839252:-1 // ensembl // 11 // --- /// YLR355C // cdna:known chromosome:SGD1:XII:838065:839252:-1 gene:YLR355C // ensembl // 11 // --- --- No cerevisiae_gene 1.21556649345469 -2.7415054374788 -1.26541296871212 -2.08933349263215 -1.09711031809095 Max fold change below threshold 4 2.7415054374788 Max fold change at or above threshold 0.991645495193065 -1.03201408714768 -0.669297873546987 0.709666465501597 2331.7839050293 1062.7850794318 0.45578197754069 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777450_at SPAC167.03c.S1 --- 2.74114983128187 --- --- --- --- 0.951590240001678 0.719627797603607 0.721570611000061 0.347150027751923 0.780517995357513 0.850341975688934 0.696289002895355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC167.03c /GEN=snu66 /DEF=involved in mRNA splicing --- --- --- --- --- --- SPAC167.03c // |snu66||U4/U6.U5 snRNP component |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.714349639697 -1.32233669012025 -2.44272387366043 -1.31877632693884 -2.74114983128187 Max fold change below threshold 0 2.74114983128187 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769716_at YPR121W.S1 Protein with similarity to hydroxymethylpyrimidine phosphate kinases; member of a gene family with THI20 and THI21; not required for thiamine biosynthesis 2.74068902177189 58.6948528289795 173.074516296387 THI22 9228 // thiamin biosynthesis // inferred from genetic interaction /// 9228 // thiamin biosynthesis // inferred from expression pattern --- 8972 // phosphomethylpyrimidine kinase activity // inferred from sequence similarity 151.536315917969 55.2913208007813 62.0983848571777 194.612716674805 0.00195312988944352 0.111571997404099 0.0952147990465164 0.000732421991415322 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR121W /GEN=THI22 /DB_XREF=GI:6325378 /SEG=NC_001148:+778577,780295 /DEF=THI for thiamine metabolism. Transcribed in the presence of low level of thiamine (10-8M) and turned off in the presence of high level (10-6M) of thiamine. Under the positive control of THI2 and THI3. /NOTE=Thi22p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: phosphomethylpyrimidine kinase activity [goid GO:0008972] [evidence ISS] [pmid 10383756]; go_process: thiamin biosynthesis [goid GO:0009228] [evidence IEP,IGI] [pmid 10383756] --- --- --- --- --- --- S0006325 // THI22 SGDID:S0006325, Chr XVI from 778579-780297, Verified ORF // sgd // 11 // --- /// GENSCAN00000017275 // cdna:Genscan chromosome:SGD1:XVI:778645:780297:1 // ensembl // 11 // --- /// GENEFINDER00000020931 // cdna:GeneFinder chromosome:SGD1:XVI:778645:780297:1 // ensembl // 11 // --- /// YPR121W // cdna:known chromosome:SGD1:XVI:778579:780297:1 gene:YPR121W // ensembl // 11 // --- --- No cerevisiae_gene 1.06211094378016 -2.74068902177189 1.24093543061362 -2.44026179209801 1.28426453748654 Max fold change below threshold 4 2.74068902177189 Max fold change at or above threshold 0.521260124234972 -0.8859315302457 -0.786405900679058 1.15107730668979 115.884684562683 68.3950866328204 0.590199532327543 PPAPAP Called_P_>2EXP 2 0 PAAP 2 2 0 Yes No 1 < x = 2
1769584_at SPAC1782.01.S1 --- 2.74024835449493 --- --- --- --- 0.340722739696503 0.51739764213562 0.270079463720322 0.169043108820915 0.725830018520355 0.904784977436066 0.943848013877869 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1782.01 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC1782.01 // ||SPAPYUG7.07|conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.74024835449493 1.51852982456202 -1.15481097587583 -1.26156478172415 -2.01559674377182 Max fold change below threshold 0 2.74024835449493 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775231_at YGL033W.S1 Meiosis-specific protein that localizes to chromosomes, preventing synapsis between nonhomologous chromosomes and ensuring synapsis between homologs; complexes with Mnd1p to promote homolog pairing and meiotic double-strand break repair 2.73842233591407 10.9303884506226 4.72114086151123 HOP2 7129 // synapsis // inferred from mutant phenotype 794 // condensed nuclear chromosome // inferred from direct assay 3690 // double-stranded DNA binding // inferred from direct assay /// 3690 // double-stranded DNA binding // inferred from physical interaction /// 5515 // protein binding // inferred from physical interaction 4.45480680465698 12.1991424560547 9.66163444519043 4.98747491836548 0.334473013877869 0.014160200022161 0.00585938012227416 0.00805663969367743 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL033W /GEN=HOP2 /DB_XREF=GI:9755333 /SEG=NC_001139:+435628,436354 /DEF=Meiosis-specific protein that localizes to chromosomes, preventing synapsis between nonhomologous chromosomes and ensuring synapsis between homologs; complexes with Mnd1p to promote homolog pairing and meiotic double-strand break repair /NOTE=Hop2p; go_component: condensed nuclear chromosome [goid GO:0000794] [evidence IDA] [pmid 9708739]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: synapsis [goid GO:0007129] [evidence IMP] [pmid 9708739] --- --- --- --- --- --- S0003001 // HOP2 SGDID:S0003001, Chr VII from 435630-435684,435755-436356, intron sequence removed, Verified ORF // sgd // 11 // --- /// YGL033W // cdna:known chromosome:SGD1:VII:435630:436356:1 gene:YGL033W // ensembl // 11 // --- --- No cerevisiae_gene 1.6320903167674 2.73842233591407 1.39970598583427 2.16881109975192 1.11957154082454 Max fold change below threshold 4 2.73842233591407 Max fold change at or above threshold -0.901827621196312 1.17000362265169 0.491147667141248 -0.759323668596625 7.82576465606689 3.73791816992498 0.477642547942861 APPPPP Called_P_>2EXP 4 0 APPP 1 3 0 Yes Yes 2 < x = 3
1775689_at SPAC17H9.18c.S1 --- 2.73833575829234 --- --- --- --- 0.806454062461853 0.466723382472992 0.294505178928375 1.93291819095612 0.559326171875 0.870360970497131 0.601073980331421 0.625244140625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17H9.18c /DEF=dubious --- --- --- --- --- --- SPAC17H9.18c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- L75944 // gb // 5 // Cross Hyb Matching Probes No No 1.92212359241138 -1.72790584904651 -1.25352618844787 -2.73833575829234 2.39681127658471 Max fold change below threshold 0 2.73833575829234 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777425_at SPBC23E6.06c.S1 --- 2.73798299839459 --- --- --- --- 2.74078965187073 6.30454778671265 1.00102508068085 4.99801731109619 0.753906011581421 0.398925989866257 0.725830018520355 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23E6.06c /DEF=3,4-Dihydroxy-2-butanone 4-phosphate synthase (predicted) --- --- --- --- --- --- SPBC23E6.06c // |||3,4-Dihydroxy-2-butanone 4-phosphate synthase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.0008416186741 2.30026692577793 -2.07156227573155 -2.73798299839459 1.82356836749029 Max fold change below threshold 3 2.73798299839459 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775052_at YGR128C.S1 Nucleolar protein required for export of tRNAs from the nucleus; also copurifies with the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA 2.73729493999281 135.777870178223 386.121597290039 UTP8 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction 30515 // snoRNA binding // inferred from physical interaction 366.896636962891 134.036209106445 137.51953125 405.346557617188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR128C /GEN=UTP8 /DB_XREF=GI:6321567 /SEG=NC_001139:-747953,750094 /DEF=Nucleolar protein required for export of tRNAs from the nucleus; also copurifies with the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA /NOTE=Utp8p; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: snoRNA binding [goid GO:0030515] [evidence IPI] [pmid 12068309]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP,IPI] [pmid 12068309] --- --- --- --- --- --- S0003360 // UTP8 SGDID:S0003360, Chr VII from 750096-747955, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019440 // cdna:Genscan chromosome:SGD1:VII:747955:750096:-1 // ensembl // 11 // --- /// GENEFINDER00000021541 // cdna:GeneFinder chromosome:SGD1:VII:747955:750096:-1 // ensembl // 11 // --- /// YGR128C // cdna:known chromosome:SGD1:VII:747955:750096:-1 gene:YGR128C // ensembl // 11 // --- --- No cerevisiae_gene 2.2786439291297 -2.73729493999281 -1.25214017840479 -2.66796020629172 1.10479769172206 Max fold change below threshold 4 2.73729493999281 Max fold change at or above threshold 0.728694015833464 -0.872900699370541 -0.848942698486382 0.993149382023459 260.949733734131 145.392854787726 0.557168051897151 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770666_at YHR040W.S1 Essential protein required for the accumulation of box C/D snoRNA 2.73725717269302 317.619567871094 774.845886230469 BCD1 16074 // snoRNA metabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3676 // nucleic acid binding // non-traceable author statement 722.188232421875 263.836456298828 371.402679443359 827.503540039063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR040W /GEN=BCD1 /DB_XREF=GI:6321830 /SEG=NC_001140:+187916,189016 /DEF=Box C/D snoRNA accumulation /NOTE=Bcd1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_function: nucleic acid binding [goid GO:0003676] [evidence NAS] [pmid 12837249]; go_process: snoRNA metabolism [goid GO:0016074] [evidence IMP] [pmid 12837249] --- --- --- --- --- --- S0001082 // BCD1 SGDID:S0001082, Chr VIII from 187916-189016, Verified ORF // sgd // 11 // --- /// GENSCAN00000016587 // cdna:Genscan chromosome:SGD1:VIII:187916:189016:1 // ensembl // 11 // --- /// GENEFINDER00000020296 // cdna:GeneFinder chromosome:SGD1:VIII:187916:189016:1 // ensembl // 11 // --- /// YHR040W // cdna:known chromosome:SGD1:VIII:187916:189016:1 gene:YHR040W // ensembl // 11 // --- --- No cerevisiae_gene 1.01413964719719 -2.73725717269302 -1.19430645112288 -1.94448848216242 1.14582805823907 Max fold change below threshold 4 2.73725717269302 Max fold change at or above threshold 0.649188306309631 -1.04190179404147 -0.645035926889162 1.037749414621 546.232727050781 271.03924032663 0.496197365892052 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776697_at YBR061C.S1 2'-O-ribose methyltransferase, methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop 2.73719728264105 161.289176940918 396.324844360352 TRM7 6412 // protein biosynthesis // inferred from mutant phenotype /// 30488 // tRNA methylation // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 8175 // tRNA methyltransferase activity // inferred from direct assay /// 8175 // tRNA methyltransferase activity // inferred from mutant phenotype /// 8175 // tRNA methyltransferase activity // inferred from sequence similarity 380.3076171875 138.940521240234 183.637832641602 412.342071533203 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR061C /GEN=TRM7 /DB_XREF=GI:6319535 /SEG=NC_001134:-364747,365679 /DEF=tRNA methyltransferase /NOTE=Trm7p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11927565]; go_function: tRNA methyltransferase activity [goid GO:0008175] [evidence IDA] [pmid 11927565]; go_function: tRNA methyltransferase activity [goid GO:0008175] [evidence IMP,ISS] [pmid 9917067]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP] [pmid 11927565]; go_process: tRNA methylation [goid GO:0030488] [evidence IDA] [pmid 11927565] --- --- --- --- --- --- S0000265 // TRM7 SGDID:S0000265, Chr II from 365717-364785, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021189 // cdna:Genscan chromosome:SGD1:II:364785:365717:-1 // ensembl // 11 // --- /// GENEFINDER00000022232 // cdna:GeneFinder chromosome:SGD1:II:364785:365717:-1 // ensembl // 11 // --- /// YBR061C // cdna:known chromosome:SGD1:II:364785:365717:-1 gene:YBR061C // ensembl // 11 // --- --- No cerevisiae_gene 1.11312205502844 -2.73719728264105 -1.16180943238318 -2.07096550703542 1.08423300743385 Max fold change below threshold 4 2.73719728264105 Max fold change at or above threshold 0.73795829576701 -1.01689674260937 -0.691925760932132 0.970864207774492 278.807010650635 137.542469701989 0.493325004206366 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Ec-bioB-M_at AFFX-r2-Ec-bioB-M --- 2.73673577097885 --- --- --- --- 533.681640625 599.103271484375 203.505416870117 195.006637573242 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2393-2682 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --- --- --- --- --- --- J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioB gene biotin synthetase corresponding to nucleotides 2393-2682 of J04423 /LEN=1114 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-r2-Ec-bioB-M // E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2393-2682 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// AFFX-r2-Ec-bioB-M // --- // unknown // --- // --- /// AFFX-r2-Ec-bioB-M // --- // unknown // --- // --- /// AFFX-r2-Ec-bioB-M // --- // unknown // --- // --- /// AFFX-r2-Ec-bioB-M // --- // unknown // --- // --- /// AFFX-r2-Ec-bioB-M // --- // gb // --- // --- /// AFFX-r2-Ec-bioB-M // E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2393-2682 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-M // --- // unknown // --- // --- /// AFFX-r2-Ec-bioB-M // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-M // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-M // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-M // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-M // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-M // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-M // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-M // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-M // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-M // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-M // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-M // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-M // --- // affx // --- // --- 957992 // gb // 2 // Cross Hyb Matching Probes /// 16445223 // gb // 2 // Cross Hyb Matching Probes /// 917589 // gb // 2 // Cross Hyb Matching Probes /// 15829254 // gb // 2 // Cross Hyb Matching Probes /// 1037718 // gb // 6 // Cross Hyb Matching Probes /// 26245917 // gb // 6 // Cross Hyb Matching Probes AFFX_control No -1.56149801188414 1.12258550019214 -1.98223549882847 -2.62244439894006 -2.73673577097885 Max fold change below threshold 4 2.73673577097885 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770841_at YHR129C.S1 Actin-related protein of the dynactin complex; required for spindle orientation and nuclear migration; putative ortholog of mammalian centractin 2.73667357160006 77.466381072998 171.025550842285 ARP1 132 // establishment of mitotic spindle orientation // inferred from mutant phenotype /// 7097 // nuclear migration // inferred from mutant phenotype 5869 // dynactin complex // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from physical interaction 164.535232543945 60.1223449707031 94.810417175293 177.515869140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR129C /GEN=ARP1 /DB_XREF=GI:6321921 /SEG=NC_001140:-363001,364155 /DEF=actin-related protein of the dynactin complex /NOTE=Arp1p; go_component: dynactin complex [goid GO:0005869] [evidence IDA] [pmid 9658168]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9658168]; go_process: mitotic anaphase B [goid GO:0000092] [evidence IGI,IMP] [pmid 9658168] --- --- --- --- --- --- S0001171 // ARP1 SGDID:S0001171, Chr VIII from 364155-363001, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016663 // cdna:Genscan chromosome:SGD1:VIII:363001:364155:-1 // ensembl // 11 // --- /// YHR129C // cdna:known chromosome:SGD1:VIII:363001:364155:-1 gene:YHR129C // ensembl // 11 // --- --- No cerevisiae_gene -1.40676499514259 -2.73667357160006 1.49302266228606 -1.73541302154319 1.07889274774758 Max fold change below threshold 4 2.73667357160006 Max fold change at or above threshold 0.718261260897253 -1.14317079375759 -0.524765431962459 0.949674964822797 124.245965957642 56.0927740081294 0.451465555245896 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769972_at YHR046C.S1 Inositol monophosphatase, involved in biosynthesis of inositol and in phosphoinositide second messenger signaling; INM1 expression increases in the presence of inositol and decreases upon exposure to antibipolar drugs lithium and valproate 2.73665464691922 108.892822265625 282.574142456055 INM1 46855 // inositol phosphate dephosphorylation // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8934 // inositol-1(or 4)-monophosphatase activity // inferred from direct assay /// 8934 // inositol-1(or 4)-monophosphatase activity // inferred from sequence similarity 249.325958251953 91.1061096191406 126.679534912109 315.822326660156 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR046C /GEN=INM1 /DB_XREF=GI:6321836 /SEG=NC_001140:-197390,198277 /DEF=Inositol monophosphatase, involved in biosynthesis of inositol and in phosphoinositide second messenger signalling; INM1 expression increases in the presence of inositol and decreases upon exposure to antibipolar drugs lithium and valproate /NOTE=Inm1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: inositol-1(or 4)-monophosphatase activity [goid GO:0008934] [evidence IDA,ISS] [pmid 10096091]; go_process: myo-inositol metabolism [goid GO:0006020] [evidence IDA] [pmid 10844654] --- --- --- --- --- --- S0001088 // INM1 SGDID:S0001088, Chr VIII from 198277-197390, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016593 // cdna:Genscan chromosome:SGD1:VIII:197390:198277:-1 // ensembl // 11 // --- /// GENEFINDER00000020128 // cdna:GeneFinder chromosome:SGD1:VIII:197390:198277:-1 // ensembl // 11 // --- /// YHR046C // cdna:known chromosome:SGD1:VIII:197390:198277:-1 gene:YHR046C // ensembl // 11 // --- --- No cerevisiae_gene 1.55245178253428 -2.73665464691922 -1.11529981714758 -1.96816287986008 1.26670455364702 Max fold change below threshold 4 2.73665464691922 Max fold change at or above threshold 0.510915945309323 -0.997449588971503 -0.65831559843942 1.1448492421016 195.73348236084 104.894897845999 0.535906767614864 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780221_at YGR044C.S1 Zinc finger protein involved in control of meiosis; prevents meiosis by repressing IME1 expression and promotes mitosis by activating CLN2 expression; directly repressed by a1-a2 regulator; mediates cell type control of sporulation 2.73648522984147 118.803146362305 39.8297958374023 RME1 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 7126 // meiosis // traceable author statement 5634 // nucleus // inferred from direct assay 16566 // specific transcriptional repressor activity // inferred from direct assay 45.2061309814453 123.705909729004 113.900382995605 34.4534606933594 0.00122069998178631 0.00195312988944352 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR044C /GEN=RME1 /DB_XREF=GI:6321481 /SEG=NC_001139:-582992,583894 /DEF=mediates cell type control of sporulation; negatively regulates IME1 and sporulation /NOTE=Rme1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9580682]; go_function: specific transcriptional repressor activity [goid GO:0016566] [evidence IDA] [pmid 9580682]; go_process: meiosis [goid GO:0007126] [evidence TAS] [pmid 9580682]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IDA] [pmid 9580682] --- --- --- --- --- --- S0003276 // RME1 SGDID:S0003276, Chr VII from 583896-582994, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019377 // cdna:Genscan chromosome:SGD1:VII:582994:583788:-1 // ensembl // 11 // --- /// YGR044C // cdna:known chromosome:SGD1:VII:582994:583896:-1 gene:YGR044C // ensembl // 11 // --- --- No cerevisiae_gene 1.84406991222998 2.73648522984147 1.10074126730009 2.51957821921003 -1.31209260468161 Max fold change below threshold 4 2.73648522984147 Max fold change at or above threshold -0.741840388572133 0.965392848234211 0.752139748534595 -0.975692208196673 79.3164710998535 45.9806996813189 0.57971186871681 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776560_at YBL093C.S1 RNA polymerase II holoenzyme component 2.73631357328634 636.625457763672 615.608612060547 ROX3 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 119 // mediator complex // inferred from direct assay /// 5634 // nucleus // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from direct assay 581.353332519531 568.448120117188 704.802795410156 649.863891601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL093C /GEN=ROX3 /DB_XREF=GI:6319377 /SEG=NC_001134:-44253,44915 /DEF=RNA polymerase II holoenzyme component /NOTE=Rox3p; go_component: mediator complex [goid GO:0000119] [evidence IDA] [pmid 9420330]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: RNA polymerase II transcription mediator activity [goid GO:0016455] [evidence IDA] [pmid 9420330]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IDA] [pmid 9420330] --- --- --- --- --- --- S0000189 // ROX3 SGDID:S0000189, Chr II from 44915-44253, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021065 // cdna:Genscan chromosome:SGD1:II:44253:44915:-1 // ensembl // 11 // --- /// GENEFINDER00000022224 // cdna:GeneFinder chromosome:SGD1:II:44253:44915:-1 // ensembl // 11 // --- /// YBL093C // cdna:known chromosome:SGD1:II:44253:44915:-1 gene:YBL093C // ensembl // 11 // --- --- No cerevisiae_gene 2.73631357328634 -1.02270253334585 1.19216257862424 1.21234842218175 1.11784667817266 Max fold change below threshold 4 2.73631357328634 Max fold change at or above threshold -0.705287045679775 -0.908618732797508 1.239755529425 0.374150249052283 626.117034912109 63.4687715686507 0.101368862416529 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778831_at YOL094C.S1 Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon 2.73605145337068 77.896053314209 184.734870910645 RFC4 6272 // leading strand elongation // inferred from direct assay /// 6298 // mismatch repair // traceable author statement /// 7062 // sister chromatid cohesion // inferred from physical interaction 5663 // DNA replication factor C complex // inferred from direct assay /// 5663 // DNA replication factor C complex // inferred from sequence similarity 3689 // DNA clamp loader activity // inferred from direct assay /// 17076 // purine nucleotide binding // inferred from sequence similarity 176.331619262695 64.4474792480469 91.3446273803711 193.138122558594 0.000732421991415322 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL094C /GEN=RFC4 /DB_XREF=GI:6324478 /SEG=NC_001147:-141583,142554 /DEF=RFC is a DNA binding protein and ATPase that acts as a processivity factor for DNA polymerases delta and epsilon and loads proliferating cell nuclear antigen (PCNA) on DNA /NOTE=Rfc4p; go_component: DNA replication factor C complex [goid GO:0005663] [evidence IDA,ISS] [pmid 8063832]; go_function: DNA clamp loader activity [goid GO:0003689] [evidence IDA] [pmid 12604797]; go_function: purine nucleotide binding [goid GO:0017076] [evidence ISS] [pmid 7651383]; go_process: leading strand elongation [goid GO:0006272] [evidence IDA] [pmid 1346062]; go_process: mismatch repair [goid GO:0006298] [evidence TAS] [pmid 10072354]; go_process: sister chromatid cohesion [goid GO:0007062] [evidence IPI] [pmid 11389843] --- --- --- --- --- --- S0005454 // RFC4 SGDID:S0005454, Chr XV from 142554-141583, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017391 // cdna:Genscan chromosome:SGD1:XV:141583:142554:-1 // ensembl // 11 // --- /// GENEFINDER00000022752 // cdna:GeneFinder chromosome:SGD1:XV:141583:142554:-1 // ensembl // 11 // --- /// YOL094C // cdna:known chromosome:SGD1:XV:141583:142554:-1 gene:YOL094C // ensembl // 11 // --- --- No cerevisiae_gene -1.06399481816625 -2.73605145337068 1.10357414792175 -1.93039945883656 1.09531190926603 Max fold change below threshold 4 2.73605145337068 Max fold change at or above threshold 0.714227615684628 -1.06092929717306 -0.634178388268536 0.980880069756972 131.315462112427 63.0277465638429 0.479972012053548 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774899_at SPCC1183.03c.S1 --- 2.7359240265668 --- --- --- --- 4.97724103927612 3.83049416542053 7.00638866424561 1.81921756267548 0.533936023712158 0.601073980331421 0.0805663987994194 0.4326171875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1183.03c /DEF=frataxin homolog --- --- --- --- --- --- SPCC1183.03c // |||frataxin homolog|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.01702889891018 -1.29937308982422 -2.25994484824282 1.40768522339127 -2.7359240265668 Max fold change below threshold 3 2.7359240265668 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771257_at SPBC19F5.03.S1 --- 2.73586403613189 --- --- --- --- 15.1897468566895 5.55208396911621 10.0265779495239 6.86244773864746 0.24609400331974 0.274170011281967 0.398925989866257 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19F5.03 /DEF=polyphosphoinositide phosphatase (predicted) --- --- --- --- --- --- SPBC19F5.03 // |||inositol polyphosphoinositide phosphatase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.2348788683217 -2.73586403613189 -1.99079185877375 -1.51494826382023 -2.21345902150116 Max fold change below threshold 4 2.73586403613189 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779135_at SPBC1271.09.S1 --- 2.73552395296763 --- --- --- --- 2.23117709159851 4.99465179443359 1.4423371553421 6.10343837738037 0.5 0.5 0.466064006090164 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1271.09 /DEF=membrane transporter --- --- --- --- --- --- SPBC1271.09 // |||glycerophosphodiester transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.9143936864163 2.23857255134115 2.12540783598617 -1.54691785019523 2.73552395296763 Max fold change below threshold 2 2.73552395296763 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780243_at YNL238W.S1 Subtilisin-like protease (proprotein convertase), a calcium-dependent serine protease involved in the activation of proproteins of the secretory pathway 2.73549802539029 140.211757659912 356.073440551758 KEX2 7323 // peptide pheromone maturation // inferred from mutant phenotype 5802 // Golgi trans face // inferred from direct assay 4252 // serine-type endopeptidase activity // inferred from direct assay 338.803405761719 123.854377746582 156.569137573242 373.343475341797 0.000244141003349796 0.00292969006113708 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL238W /GEN=KEX2 /DB_XREF=GI:6324091 /SEG=NC_001146:+202427,204871 /DEF=prohormone processing; golgi localization marker, dispensable for meiotic recombination but partially required for meiosis I and/or meiosis II /NOTE=Kex2p; go_component: Golgi trans face [goid GO:0005802] [evidence IDA] [pmid 8308064]; go_function: serine-type endopeptidase activity [goid GO:0004252] [evidence IDA] [pmid 2646633]; go_process: peptide pheromone maturation [goid GO:0007323] [evidence IMP] [pmid 6430565] --- --- --- --- --- S0005182 // span:676-698 // numtm:1 S0005182 // KEX2 SGDID:S0005182, Chr XIV from 202427-204871, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020670 // cdna:GeneFinder chromosome:SGD1:XIV:202427:204871:1 // ensembl // 11 // --- /// GENSCAN00000019850 // cdna:Genscan chromosome:SGD1:XIV:202577:204871:1 // ensembl // 11 // --- /// YNL238W // cdna:known chromosome:SGD1:XIV:202427:204871:1 gene:YNL238W // ensembl // 11 // --- --- No cerevisiae_gene -1.54225849626077 -2.73549802539029 -1.30736027900628 -2.1639220283961 1.10194723250324 Max fold change below threshold 4 2.73549802539029 Max fold change at or above threshold 0.718776771423882 -0.985381553174421 -0.726012479442619 0.992617261193158 248.142599105835 126.132076411271 0.508304808871106 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769419_at YMR247C.S1 Hypothetical protein 2.73514839835973 594.985168457031 1522.57067871094 --- --- --- --- 1504.00842285156 640.088500976563 549.8818359375 1541.13293457031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR247C /GEN=FAA4 /DB_XREF=GI:6323904 /SEG=NC_001145:-763350,768038 /DEF=Hypothetical ORF /NOTE=Ymr247cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.C-terminal fragment of elongation factor SelB // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; C-terminal fragment of elongation factor SelB // 0.569999992847443 --- S0004861 // YMR247C SGDID:S0004861, Chr XIII from 768038-763350, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018924 // cdna:Genscan chromosome:SGD1:XIII:763350:768038:-1 // ensembl // 11 // --- /// GENEFINDER00000022030 // cdna:GeneFinder chromosome:SGD1:XIII:763350:766229:-1 // ensembl // 11 // --- /// YMR247C // cdna:known chromosome:SGD1:XIII:763350:768038:-1 gene:YMR247C // ensembl // 11 // --- --- No cerevisiae_gene -1.76016747312909 -2.34968823929339 -1.17764730654897 -2.73514839835973 1.02468371264063 Max fold change below threshold 4 2.73514839835973 Max fold change at or above threshold 0.829075634632616 -0.77965278509277 -0.947629031527778 0.898206181987932 1058.77792358398 537.020364209438 0.507207746069746 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776946_at YOR130C.S1 Ornithine transporter of the mitochondrial inner membrane, exports ornithine from mitochondria as part of arginine biosynthesis; human ortholog is associated with hyperammonaemia-hyperornithinaemia-homocitrullinuria (HHH) syndrome 2.73421441023467 176.696876525879 472.406600952148 ORT1 66 // mitochondrial ornithine transport // inferred from direct assay /// 6526 // arginine biosynthesis // inferred from mutant phenotype 5740 // mitochondrial membrane // inferred from direct assay 64 // L-ornithine transporter activity // inferred from direct assay 424.391204833984 155.215042114258 198.1787109375 520.421997070313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR130C /GEN=ORT1 /DB_XREF=GI:6324704 /SEG=NC_001147:-569929,570807 /DEF=Ornithine transporter of the mitochondrial inner membrane, exports ornithine from mitochondria as part of arginine biosynthesis; human ortholog is associated with hyperammonaemia-hyperornithinaemia-homocitrullinuria (HHH) syndrome /NOTE=Ort1p; go_component: mitochondrial membrane [goid GO:0005740] [evidence IDA] [pmid 8798783]; go_function: L-ornithine transporter activity [goid GO:0000064] [evidence IDA] [pmid 9237680]; go_process: arginine biosynthesis [goid GO:0006526] [evidence IMP] [pmid 8798783]; go_process: mitochondrial ornithine transport [goid GO:0000066] [evidence IDA] [pmid 9237680] --- --- --- --- --- --- S0005656 // ORT1 SGDID:S0005656, Chr XV from 570807-569929, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017558 // cdna:Genscan chromosome:SGD1:XV:569929:570807:-1 // ensembl // 11 // --- /// YOR130C // cdna:known chromosome:SGD1:XV:569929:570807:-1 gene:YOR130C // ensembl // 11 // --- --- No cerevisiae_gene 1.36098750141211 -2.73421441023467 1.28869558451685 -2.14145708601276 1.2262789406154 Max fold change below threshold 4 2.73421441023467 Max fold change at or above threshold 0.567116730302385 -0.961880882042056 -0.717834951731748 1.11259910347142 324.551738739014 176.047470935546 0.542432684599213 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772580_at YDR424C.S1 AP-1-like bZIP transcriptional activator involved in multiple stress responses, iron metabolism, and pleiotropic drug resistance; controls a set of genes involved in stabilizing proteins, binds consensus sequence TTACTAA; 5' UTR contains uORFs /// Cytoplasmic light chain dynein, microtubule motor protein 2.73351316303053 1417.61834716797 646.991821289063 CAD1 /// DYN2 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 46686 // response to cadmium ion // inferred from mutant phenotype /// 7017 // microtubule-based process // inferred from genetic interaction /// 30029 // actin filament-based process // inferred from genetic interaction 5634 // nucleus // inferred from curator /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5868 // cytoplasmic dynein complex // inferred from sequence similarity /// 5881 // cytoplasmic microtubule // traceable author statement 3702 // RNA polymerase II transcription factor activity // inferred from direct assay /// 3777 // microtubule motor activity // inferred from sequence similarity 589.366027832031 1611.03979492188 1224.19689941406 704.617614746094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR424C /GEN=DYN2 /DB_XREF=GI:6320632 /SEG=NC_001136:-1319375,1319829 /DEF=Cytoplasmic light chain dynein, microtubule motor protein /NOTE=Dyn2p; go_component: cell [goid GO:0005623] [evidence NAS] [pmid 8628245]; go_function: microtubule motor activity [goid GO:0003777] [evidence ISS] [pmid 8628245]; go_process: actin filament-based process [goid GO:0030029] [evidence IGI] [pmid 8293974]; go_process: microtubule-based process [goid GO:0007017] [evidence IGI] [pmid 8628245] --- --- --- --- --- --- S0002832 // DYN2 SGDID:S0002832, Chr IV from 1319831-1319807,1319710-1319688,1319607-1319377, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// U36468 // Saccharomyces cerevisiae cytoplasmic dynein light chain 1 (SLC1) mRNA, complete cds. // gb // 11 // --- /// X69106 // S.cerevisiae YAP2 mRNA. // gb // 10 // --- /// YDR424C // cdna:known chromosome:SGD1:IV:1319377:1319831:-1 gene:YDR424C // ensembl // 11 // --- --- No cerevisiae_gene -1.10779541991704 2.73351316303053 1.5399035414962 2.07714194847172 1.19555179883376 Max fold change below threshold 4 2.73351316303053 Max fold change at or above threshold -0.933569054040819 1.21978138662706 0.404444489132136 -0.69065682171838 1032.30508422852 474.457732375861 0.459609992844744 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774514_at SPCC16C4.16c.S1 --- 2.73277442874522 --- --- --- --- 0.557370364665985 0.691276431083679 0.53715842962265 0.721650958061218 0.969726979732513 0.99169921875 0.998778998851776 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16C4.16c /DEF=conserved fungal protein --- --- --- --- --- --- SPCC16C4.16c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.73277442874522 1.2402461180331 -1.45581323987979 -1.03762751160311 1.29474224646601 Max fold change below threshold 0 2.73277442874522 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780102_at YHR032W.S1 Hypothetical protein 2.73272656864686 544.086669921875 1474.26989746094 --- --- --- --- 1422.65588378906 520.599426269531 567.573913574219 1525.88391113281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR032W /GEN=RRM3 /DB_XREF=GI:6321821 /SEG=NC_001140:+173336,175081 /DEF=Hypothetical ORF /NOTE=Yhr032wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001074 // span:169-191,201-223,244-266,281-302,314-336,346-368,398-420,430-452 // numtm:8 S0001074 // YHR032W SGDID:S0001074, Chr VIII from 173336-175081, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016580 // cdna:Genscan chromosome:SGD1:VIII:173336:175081:1 // ensembl // 11 // --- /// GENEFINDER00000020127 // cdna:GeneFinder chromosome:SGD1:VIII:173336:176811:1 // ensembl // 11 // --- /// YHR032W // cdna:known chromosome:SGD1:VIII:173336:175081:1 gene:YHR032W // ensembl // 11 // --- --- No cerevisiae_gene -1.13752828229027 -2.73272656864686 -1.09302504211951 -2.50655615024673 1.07256008183006 Max fold change below threshold 4 2.73272656864686 Max fold change at or above threshold 0.767071820857865 -0.906397526024959 -0.819251800350434 0.958577505517528 1009.17828369141 539.033749975639 0.534131340999474 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773556_at SPBC660.13c.S1 --- 2.73263815113449 --- --- --- --- 1.89038825035095 0.691781401634216 1.04720270633698 0.959138512611389 0.334473013877869 0.888427972793579 0.533936023712158 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC660.13c /GEN=ssb1 /DEF=DNA replication factor A complex (subunit 1) (PMID 9111307) (PMID 8702843) --- --- --- --- --- --- U59385 // Schizosaccharomyces pombe single-stranded DNA binding protein p68 largest subunit (ssb1+) mRNA, complete cds. // gb // 11 // --- /// SPBC660.13c // |ssb1|rpa1, rad11|DNA replication factor A complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.7776056920141 -2.73263815113449 1.46548653949501 -1.8051789199088 -1.97092309973468 Max fold change below threshold 0 2.73263815113449 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771956_at YML022W.S1 Adenine phosphoribosyltransferase, catalyzes the formation of AMP from adenine and 5-phosphoribosylpyrophosphate; involved in the salvage pathway of purine nucleotide biosynthesis 2.73254208059593 521.630172729492 1234.2880859375 APT1 6167 // AMP biosynthesis // traceable author statement /// 6168 // adenine salvage // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3999 // adenine phosphoribosyltransferase activity // inferred from direct assay 1159.49987792969 424.330108642578 618.930236816406 1309.07629394531 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML022W /GEN=APT1 /DB_XREF=GI:6323619 /SEG=NC_001145:+228937,229500 /DEF=Adenine phosphoribosyltransferase, catalyzes the formation of AMP from adenine and 5-phosphoribosylpyrophosphate; involved in the salvage pathway of purine nucleotide biosynthesis /NOTE=Apt1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: adenine phosphoribosyltransferase activity [goid GO:0003999] [evidence IDA] [pmid 9864350]; go_process: AMP biosynthesis [goid GO:0006167] [evidence TAS] [pmid 9357956] --- --- --- --- --- --- S0004484 // APT1 SGDID:S0004484, Chr XIII from 228937-229500, Verified ORF // sgd // 11 // --- /// GENSCAN00000018698 // cdna:Genscan chromosome:SGD1:XIII:228937:229500:1 // ensembl // 11 // --- /// GENEFINDER00000022034 // cdna:GeneFinder chromosome:SGD1:XIII:228937:229500:1 // ensembl // 11 // --- /// YML022W // cdna:known chromosome:SGD1:XIII:228937:229500:1 gene:YML022W // ensembl // 11 // --- --- No cerevisiae_gene 2.05117246994643 -2.73254208059593 -1.10293296133172 -1.87339349244563 1.12900080359016 Max fold change below threshold 4 2.73254208059593 Max fold change at or above threshold 0.664828698612174 -1.07119695100057 -0.611669331610987 1.01803758399938 877.959129333496 423.478633193643 0.482344358689142 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776025_at YBR189W.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps9Bp and has similarity to E. coli S4 and rat S9 ribosomal proteins 2.73114075796324 1388.78448486328 3086.84204101563 RPS9B 6412 // protein biosynthesis // traceable author statement /// 6450 // regulation of translational fidelity // inferred from mutant phenotype 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3264.74438476563 1195.37756347656 1582.19140625 2908.93969726563 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR189W /GEN=RPS9B /DB_XREF=GI:6319666 /SEG=NC_001134:+604465,605465 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps9Bp and has similarity to E. coli S4 and rat S9 ribosomal proteins /NOTE=Rps9bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: regulation of translational fidelity [goid GO:0006450] [evidence IMP] [pmid 9733638] --- --- --- --- --- --- S0000393 // RPS9B SGDID:S0000393, Chr II from 604503-604509,604923-605503, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022303 // cdna:GeneFinder chromosome:SGD1:II:601082:605503:1 // ensembl // 10 // --- /// YBR189W // cdna:known chromosome:SGD1:II:604503:605503:1 gene:YBR189W // ensembl // 11 // --- --- No cerevisiae_gene 1.3320920197305 -2.73114075796324 -1.74562812764955 -2.06343200441437 -1.12231421910686 Max fold change below threshold 4 2.73114075796324 Max fold change at or above threshold 1.02326918153892 -1.0387184713026 -0.6532839704971 0.668733260260779 2237.81326293945 1003.57866762072 0.448463991272659 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774343_at YDR065W.S1 Hypothetical protein 2.7310057054479 58.7407493591309 53.12380027771 --- --- 5739 // mitochondrion // inferred from direct assay --- 47.8200454711914 50.5691833496094 66.9123153686523 58.4275550842285 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR065W /GEN=RPS13 /DB_XREF=GI:6320270 /SEG=NC_001136:+580683,581780 /DEF=Hypothetical ORF /NOTE=Ydr065wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002472 // YDR065W SGDID:S0002472, Chr IV from 580684-581781, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025147 // cdna:Genscan chromosome:SGD1:IV:580936:581781:1 // ensembl // 11 // --- /// YDR065W // cdna:known chromosome:SGD1:IV:580684:581781:1 gene:YDR065W // ensembl // 11 // --- --- No cerevisiae_gene 2.7310057054479 1.05748923597478 1.99094716242474 1.39925244130023 1.22182140373387 Max fold change below threshold 4 2.7310057054479 Max fold change at or above threshold -0.944392482516293 -0.624349121480703 1.27825130546946 0.290490298527541 55.9322748184204 8.58989191190332 0.153576659268548 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776808_x_at SPBC337.08c.S1 --- 2.73079639892138 --- --- --- --- 6.62292623519897 8.63901901245117 3.78314256668091 11.5890922546387 0.194580003619194 0.129638999700546 0.171387001872063 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC337.08c /GEN=ubi4 /DEF=ubiquitin family protein --- --- --- --- --- --- SPBC337.08c // |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.73079639892138 1.30441117802841 -1.39789537949082 -1.75064146234635 1.74984468240729 Max fold change below threshold 4 2.73079639892138 Max fold change at or above threshold APAAAP No 4 0 AAAP 3 1 0 No No x = 1
1772093_at SPBC336.13c.S1 --- 2.73020990010006 --- --- --- --- 6.07094526290894 6.23423910140991 2.22361850738525 3.47988271713257 0.432372987270355 0.533936023712158 0.633789002895355 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC336.13c /DEF=mitochondrial inner membrane peptidase complex --- --- --- --- --- --- SPBC336.13c // |||mitochondrial inner membrane peptidase complex|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.43814755223087 1.02689759690285 -1.56230209231031 -2.73020990010006 -1.74458329673576 Max fold change below threshold 3 2.73020990010006 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774035_at YLR002C.S1 Protein that forms a nuclear complex with Noc2p that binds to 66S ribosomal precursors to mediate their intranuclear transport; also binds to chromatin to promote the association of DNA replication factors and replication initiation 2.73006059850928 188.366363525391 535.189315795898 NOC3 6270 // DNA replication initiation // inferred from direct assay /// 6364 // rRNA processing // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // traceable author statement /// 30691 // Noc2p-Noc3p complex // inferred from physical interaction 3682 // chromatin binding // inferred from direct assay /// 5515 // protein binding // inferred from direct assay 502.843536376953 184.187683105469 192.545043945313 567.535095214844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR002C /GEN=NOC3 /DB_XREF=GI:6323030 /SEG=NC_001144:-154342,156333 /DEF=Protein that forms a nuclear complex with Noc2p that binds to 66S ribosomal precursors to mediate their intranuclear transport; also binds to chromatin to promote the association of DNA replication factors and replication initiation /NOTE=Noc3p; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 12110182]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12110182]; go_function: chromatin binding [goid GO:0003682] [evidence IDA] [pmid 12110182]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 12110182]; go_process: DNA replication initiation [goid GO:0006270] [evidence IDA] [pmid 12110182]; go_process: rRNA processing [goid GO:0006364] [evidence IDA] [pmid 12110182] --- --- --- --- --- --- S0003992 // NOC3 SGDID:S0003992, Chr XII from 156333-154342, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017744 // cdna:Genscan chromosome:SGD1:XII:154342:156333:-1 // ensembl // 11 // --- /// GENEFINDER00000024575 // cdna:GeneFinder chromosome:SGD1:XII:154342:156333:-1 // ensembl // 11 // --- /// YLR002C // cdna:known chromosome:SGD1:XII:154342:156333:-1 gene:YLR002C // ensembl // 11 // --- --- No cerevisiae_gene 1.91446629480281 -2.73006059850928 -1.30498679860485 -2.6115631234828 1.12865146742066 Max fold change below threshold 4 2.73006059850928 Max fold change at or above threshold 0.69834052115343 -0.879153510508433 -0.837780704360523 1.01859369371553 361.777839660645 202.001305155992 0.558357320463503 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775236_at SPCC1259.02c.S1 --- 2.72874191335168 --- --- --- --- 5.86863327026367 4.31316566467285 2.15067362785339 3.44523286819458 0.194580003619194 0.303710997104645 0.334473013877869 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1259.02c /DEF=6 predicted transmembrane helices --- --- --- --- --- --- SPCC1259.02c // |||6 predicted transmembrane helices|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.19796713590895 -1.3606324742708 -1.34916555062171 -2.72874191335168 -1.70340685079411 Max fold change below threshold 3 2.72874191335168 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773765_at YBR249C.S1 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase, catalyzes the first step in aromatic amino acid biosynthesis and is feedback-inhibited by tyrosine 2.72853240857967 1318.19799804688 1417.51177978516 ARO4 9073 // aromatic amino acid family biosynthesis // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3849 // 3-deoxy-7-phosphoheptulonate synthase activity // inferred from direct assay 1368.18530273438 948.724365234375 1687.67163085938 1466.83825683594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR249C /GEN=ARO4 /DB_XREF=GI:6319726 /SEG=NC_001134:-716839,717951 /DEF=3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase, catalyzes the first step in aromatic amino acid biosynthesis and is feedback-inhibited by tyrosine /NOTE=Aro4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: 3-deoxy-7-phosphoheptulonate synthase activity [goid GO:0003849] [evidence IDA] [pmid 2880280]; go_process: aromatic amino acid family biosynthesis [goid GO:0009073] [evidence TAS] --- --- --- --- --- --- S0000453 // ARO4 SGDID:S0000453, Chr II from 717989-716877, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021338 // cdna:Genscan chromosome:SGD1:II:716877:717989:-1 // ensembl // 11 // --- /// GENEFINDER00000022156 // cdna:GeneFinder chromosome:SGD1:II:716877:717989:-1 // ensembl // 11 // --- /// YBR249C // cdna:known chromosome:SGD1:II:716877:717989:-1 gene:YBR249C // ensembl // 11 // --- --- No cerevisiae_gene 2.72853240857967 -1.44213151139675 -1.52643144988308 1.23351100723454 1.07210496553676 Max fold change below threshold 4 2.72853240857967 Max fold change at or above threshold 0.00106686738382281 -1.35332319786385 1.03265066961799 0.319605660862038 1367.85488891602 309.704676860055 0.226416324838 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775637_at SPAC6F6.04c.S1 --- 2.72838543657638 --- --- --- --- 13.9538278579712 17.8805179595947 12.4422426223755 6.7691330909729 0.030273400247097 0.0239257998764515 0.219482004642487 0.0676269978284836 P P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F6.04c /DEF=membrane transporter (predicted) --- --- --- --- --- --- SPAC6F6.04c // |||membrane transporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.72838543657638 1.28140594406003 -1.32521480914167 -1.12148816587754 -2.0613906789009 Max fold change below threshold 4 2.72838543657638 Max fold change at or above threshold PAPAAA No 4 0 PPAA 2 2 0 No No 1 < x = 2
1775593_at YMR001C.S1 Polo-like kinase with similarity to Xenopus Plx1 and S. pombe Plo1p; found at bud neck, nucleus and SPBs; has multiple functions in mitosis and cytokinesis through phosphorylation of substrates; may be a Cdc28p substrate 2.72796884537984 295.393005371094 819.6337890625 CDC5 6261 // DNA-dependent DNA replication // traceable author statement /// 6261 // DNA-dependent DNA replication // inferred from mutant phenotype /// 6261 // DNA-dependent DNA replication // inferred from direct assay /// 6468 // protein amino acid phosphorylation // inferred from direct assay 922 // spindle pole // inferred from direct assay /// 5634 // nucleus // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 4674 // protein serine/threonine kinase activity // traceable author statement 779.552062988281 285.762817382813 305.023193359375 859.715515136719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR001C /GEN=CDC5 /DB_XREF=GI:6323643 /SEG=NC_001145:-269019,271136 /DEF=Polo-like kinase with similarity to Xenopus Plx1 and S. pombe Plo1p; found at bud neck, nucleus and SPBs; has multiple functions in mitosis and cytokinesis through phosphorylation of substrates; may be a Cdc28p substrate /NOTE=Cdc5p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 10594031]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9819423]; go_component: spindle pole [goid GO:0000922] [evidence IDA] [pmid 10594031]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence TAS] [pmid 9552388]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence IDA,IMP] [pmid 8943332]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence TAS] [pmid 9442876]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 8321244] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 6.0E-67 /// hanks // 1.3.3 // AGC group; AGC III RAC(Akt); DmRAC // 2.0E-73 scop // a.2.7.Valyl-tRNA synthetase (ValRS) C-terminal domain // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Valyl-tRNA synthetase (ValRS) C-terminal domain // 0.230000004172325 /// scop // a.2.9.C-terminal UvrC-binding domain of UvrB // All alpha proteins; Long alpha-hairpin; C-terminal UvrC-binding domain of UvrB; C-terminal UvrC-binding domain of UvrB // 1.70000004768372 --- S0004603 // CDC5 SGDID:S0004603, Chr XIII from 271136-269019, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018719 // cdna:Genscan chromosome:SGD1:XIII:269019:270731:-1 // ensembl // 11 // --- /// GENEFINDER00000021915 // cdna:GeneFinder chromosome:SGD1:XIII:269019:271136:-1 // ensembl // 11 // --- /// YMR001C // cdna:known chromosome:SGD1:XIII:269019:271136:-1 gene:YMR001C // ensembl // 11 // --- --- No cerevisiae_gene 1.16637745738179 -2.72796884537984 -1.29221267746679 -2.55571405702851 1.10283271118691 Max fold change below threshold 4 2.72796884537984 Max fold change at or above threshold 0.729104239291913 -0.892342327398543 -0.829097388837615 0.992335476944245 557.513397216797 304.536242975521 0.54624022399429 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772631_at YLR073C.S1 Hypothetical protein 2.72562752774481 21.7300662994385 27.2469091415405 --- --- 5768 // endosome // inferred from direct assay --- 26.2947158813477 14.9630603790283 28.4970722198486 28.1991024017334 0.0239257998764515 0.171387001872063 0.149657994508743 0.0375977009534836 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR073C /GEN=RGR1 /DB_XREF=GI:6323102 /SEG=NC_001144:-281020,281622 /DEF=Hypothetical ORF /NOTE=Ylr073cp; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004063 // YLR073C SGDID:S0004063, Chr XII from 281622-281020, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017874 // cdna:Genscan chromosome:SGD1:XII:281020:281622:-1 // ensembl // 11 // --- /// YLR073C // cdna:known chromosome:SGD1:XII:281020:281622:-1 gene:YLR073C // ensembl // 11 // --- GENEFINDER00000024614 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 2.72562752774481 -1.7573086798608 -1.15048249983602 1.08375661286621 1.07242468520972 Max fold change below threshold 4 2.72562752774481 Max fold change at or above threshold 0.281134356073139 -1.48260609594906 0.62392495389767 0.577546785978254 24.4884877204895 6.42478630533598 0.262359455539607 PPAPAP Called_P_>2EXP 4 0 PAAP 2 2 0 Yes No 1 < x = 2
1769351_at SPAC4F10.20.S1 --- 2.72522372372123 --- --- --- --- 10.1788721084595 16.0259037017822 6.31703233718872 4.56249284744263 0.0239257998764515 0.0676269978284836 0.303710997104645 0.334473013877869 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F10.20 /GEN=grx1 /DEF=arsenate reductase (glutaredoxin) activity --- --- --- --- --- --- AB015167 // Schizosaccharomyces pombe grx1 mRNA for glutaredoxin, complete cds. // gb // 10 // --- /// AF121275 // Schizosaccharomyces pombe thioltransferase mRNA, complete cds. // gb // 10 // --- /// SPAC4F10.20 // |grx1||glutaredoxin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.49632882535743 1.57442824028248 -2.72522372372123 -1.61133766065054 -2.23098916509315 Max fold change below threshold 4 2.72522372372123 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1773120_at YER095W.S1 Strand exchange protein, forms a helical filament with DNA that searches for homology; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; homolog of Dmc1p and bacterial RecA protein 2.72521287469878 1255.54486083984 2643.16247558594 RAD51 709 // meiotic joint molecule formation // inferred from mutant phenotype /// 722 // telomerase-independent telomere maintenance // inferred from mutant phenotype /// 30491 // heteroduplex formation // inferred from direct assay /// 42148 // strand invasion // traceable author statement /// 45002 // double-strand break repair via single-strand annealing // inferred from mutant phenotype /// 45003 // double-strand break repair via synthesis-dependent strand annealing // traceable author statement 228 // nuclear chromosome // inferred from direct assay /// 228 // nuclear chromosome // traceable author statement /// 794 // condensed nuclear chromosome // inferred from direct assay 150 // recombinase activity // inferred from direct assay 2877.00244140625 1055.6982421875 1455.39147949219 2409.32250976563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER095W /GEN=RAD51 /DB_XREF=GI:6320942 /SEG=NC_001137:+349976,351178 /DEF=Strand exchange protein, forms a helical filament with DNA that searches for homology; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; homolog of Dmc1p and bacterial RecA protein /NOTE=Rad51p; go_component: condensed nuclear chromosome [goid GO:0000794] [evidence IDA] [pmid 9427283]; go_component: nuclear chromosome [goid GO:0000228] [evidence IDA,TAS] [pmid 11459983]; go_function: recombinase activity [goid GO:0000150] [evidence IDA] [pmid 8066464]; go_process: double-strand break repair via break-induced replication [goid GO:0000727] [evidence IMP] [pmid 11238940]; go_process: double-strand break repair via single-strand annealing [goid GO:0045002] [evidence IMP] [pmid 8849880]; go_process: double-strand break repair via synthesis-dependent strand annealing [goid GO:0045003] [evidence TAS] [pmid 10357855]; go_process: heteroduplex formation [goid GO:0030491] [evidence IDA] [pmid 10506208]; go_process: meiotic joint molecule formation [goid GO:0000709] [evidence IMP] [pmid 1581961]; go_process: strand invasion [goid GO:0042148] [evidence TAS] [pmid 9632377]; go_process: telomerase-independent telomere maintenance [goid GO:0000722] [evidence IMP] [pmid 11238918] --- --- --- --- --- --- S0000897 // RAD51 SGDID:S0000897, Chr V from 349976-351178, Verified ORF // sgd // 11 // --- /// GENSCAN00000016882 // cdna:Genscan chromosome:SGD1:V:349976:351178:1 // ensembl // 11 // --- /// GENEFINDER00000019627 // cdna:GeneFinder chromosome:SGD1:V:349976:351178:1 // ensembl // 11 // --- /// YER095W // cdna:known chromosome:SGD1:V:349976:351178:1 gene:YER095W // ensembl // 11 // --- --- No cerevisiae_gene -1.30240973722477 -2.72521287469878 -1.14125588679989 -1.97678939443159 -1.19411263114215 Max fold change below threshold 4 2.72521287469878 Max fold change at or above threshold 1.10488616359571 -1.06439801762329 -0.588339038899583 0.547850892927158 1949.35366821289 839.587646001869 0.430700523815967 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769921_at YMR221C.S1 The authentic, non-tagged protein was localized to the mitochondria 2.7251679579391 853.260894775391 2138.13623046875 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 2157.27465820313 791.611633300781 914.91015625 2118.99780273438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR221C /GEN=ERG8 /DB_XREF=GI:6323877 /SEG=NC_001145:-713930,715444 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ymr221cp --- --- --- --- --- S0004834 // span:13-32,63-85,92-111,121-143,150-172,187-209,303-325,345-364,385-407,422-444,464-483 // numtm:11 S0004834 // FMP42 SGDID:S0004834, Chr XIII from 715444-713930, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018902 // cdna:Genscan chromosome:SGD1:XIII:713930:715216:-1 // ensembl // 11 // --- /// GENEFINDER00000021953 // cdna:GeneFinder chromosome:SGD1:XIII:713930:715444:-1 // ensembl // 11 // --- /// YMR221C // cdna:known chromosome:SGD1:XIII:713930:715444:-1 gene:YMR221C // ensembl // 11 // --- --- No cerevisiae_gene -1.18231156292591 -2.7251679579391 -1.10606004372695 -2.35790874488188 -1.01806365982039 Max fold change below threshold 4 2.7251679579391 Max fold change at or above threshold 0.889582089553252 -0.946743883275672 -0.780951681265016 0.838113474987436 1495.69856262207 743.693137879269 0.497221269354916 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775829_at YML031W.S1 Nuclear envelope protein with multiple putative transmembrane domains, required for nuclear pore complex assembly and spindle pole body duplication; required for meiosis II 2.72486553794873 482.873245239258 1182.51885986328 NDC1 6405 // RNA-nucleus export // inferred from physical interaction /// 6606 // protein-nucleus import // inferred from physical interaction /// 7020 // microtubule nucleation // inferred from physical interaction /// 7103 // spindle pole body duplication in nuclear envelope // inferred from mutant phenotype 5643 // nuclear pore // inferred from direct assay /// 5816 // spindle pole body // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from physical interaction 1273.91821289063 467.515991210938 498.230499267578 1091.11950683594 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML031W /GEN=NDC1 /DB_XREF=GI:6323610 /SEG=NC_001145:+214189,216156 /DEF=dispensable for mitotic spindle pole body duplication, but required for insertion of nascent spindle pole bodies into the nuclear envelope. ndc1 parental spindle pole bodies form monopolar spindles in mitosis. Required for meiosis II. /NOTE=Ndc1p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 10684247]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 9864355]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9864355]; go_process: RNA-nucleus export [goid GO:0006405] [evidence IPI] [pmid 9442897]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752]; go_process: protein-nucleus import [goid GO:0006606] [evidence IPI] [pmid 9442897]; go_process: spindle pole body duplication (sensu Saccharomyces) [goid GO:0007103] [evidence IMP] [pmid 9864355] --- --- --- --- --- S0004493 // span:29-51,56-78,90-109,114-136,191-210,225-247 // numtm:6 S0004493 // NDC1 SGDID:S0004493, Chr XIII from 214189-216156, Verified ORF // sgd // 11 // --- /// GENSCAN00000018691 // cdna:Genscan chromosome:SGD1:XIII:214537:216156:1 // ensembl // 11 // --- /// GENEFINDER00000022029 // cdna:GeneFinder chromosome:SGD1:XIII:215002:216156:1 // ensembl // 11 // --- /// YML031W // cdna:known chromosome:SGD1:XIII:214189:216156:1 gene:YML031W // ensembl // 11 // --- --- No cerevisiae_gene -1.7405233809584 -2.72486553794873 -1.31224969609407 -2.55688524641375 -1.16753316654082 Max fold change below threshold 4 2.72486553794873 Max fold change at or above threshold 1.07361760194308 -0.888585789598796 -0.8138487535912 0.62881694124692 832.69605255127 410.967703529463 0.493538671488009 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776027_at YPL160W.S1 Cytosolic leucyl tRNA synthetase, ligates leucine to the appropriate tRNA 2.72461925112057 360.932373046875 635.987548828125 CDC60 6429 // leucyl-tRNA aminoacylation // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 4823 // leucine-tRNA ligase activity // inferred from direct assay 614.060363769531 293.614410400391 428.250335693359 657.914733886719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL160W /GEN=CDC60 /DB_XREF=GI:6325097 /SEG=NC_001148:+246989,250261 /DEF=Cytosolic leucyl tRNA synthetase, ligates leucine to the appropriate tRNA /NOTE=Cdc60p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9742237]; go_function: leucine-tRNA ligase activity [goid GO:0004823] [evidence IDA] [pmid 9742237]; go_process: leucyl-tRNA aminoacylation [goid GO:0006429] [evidence IDA] [pmid 9742237] --- --- --- --- --- --- S0006081 // CDC60 SGDID:S0006081, Chr XVI from 246989-250261, Verified ORF // sgd // 11 // --- /// GENSCAN00000017066 // cdna:Genscan chromosome:SGD1:XVI:246989:250261:1 // ensembl // 11 // --- /// GENEFINDER00000021018 // cdna:GeneFinder chromosome:SGD1:XVI:246989:250261:1 // ensembl // 11 // --- /// YPL160W // cdna:known chromosome:SGD1:XVI:246989:250261:1 gene:YPL160W // ensembl // 11 // --- --- No cerevisiae_gene 2.72461925112057 -2.09138360386386 1.23562214205381 -1.4338818036776 1.07141703439053 Max fold change below threshold 4 2.72461925112057 Max fold change at or above threshold 0.684036555211868 -1.21212246071047 -0.415447948434059 0.943533853932658 498.4599609375 168.997405111231 0.339039077067258 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771564_at SPCC736.02.S1 --- 2.72411020115587 --- --- --- --- 2.00330948829651 5.45723581314087 3.53372764587402 2.41812539100647 0.68798828125 0.0676269978284836 0.398925989866257 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC736.02 /DEF=hypothetical protein --- --- --- --- --- --- SPCC736.02 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.01745929931104 2.72411020115587 1.64628980769865 1.76394494536083 1.20706531124289 Max fold change below threshold 2 2.72411020115587 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Sp-18SrRNA-5_at AFFX-r2-Sp-18SrRNA-5 --- 2.72305986570004 --- --- --- --- 846.654724121094 852.662841796875 310.920349121094 468.521850585938 0.00292969006113708 0.00415039015933871 0.018554700538516 0.00805663969367743 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=Z19578 gi|288694:1471-3312 S.pombe gene encoding 18S, 5.8S, and 28S ribosomal RNA (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPRRNA.22 // |||18S, 5.8S, and 28S rRNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPRRNA.21 // |||18S, 5.8S, and 28S rRNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPRRNA.23 // |||18S, 5.8S, and 28S rRNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPRRNA.09 // |||18S, 5.8S, and 28S ribosomal RNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPRRNA.08 // |||18S, 5.8S, and 28S ribosomal RNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- AB001020 // gb // 1 // Cross Hyb Matching Probes AFFX_control No -2.36583340439684 1.00709630207523 -1.55956214496486 -2.72305986570004 -1.80707628270114 Max fold change below threshold 4 2.72305986570004 Max fold change at or above threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1774055_at YIL047C.S1 Plasma membrane protein of unknown function; truncation and overexpression suppresses lethality of G-alpha protein deficiency 2.72292288952542 2892.47619628906 1193.94958496094 SYG1 7165 // signal transduction // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay --- 1159.08618164063 3156.10229492188 2628.85009765625 1228.81298828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL047C /GEN=SYG1 /DB_XREF=GI:6322142 /SEG=NC_001141:-265114,267822 /DEF=Protein for which truncation and overexpression can suppress lethality of G-alpha protein deficiency /NOTE=Syg1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 7592711]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: signal transduction [goid GO:0007165] [evidence IMP] [pmid 7592711] --- --- --- --- --- S0001309 // span:403-425,440-462,496-518,524-546,567-589 // numtm:5 S0001309 // SYG1 SGDID:S0001309, Chr IX from 267822-265114, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016440 // cdna:Genscan chromosome:SGD1:IX:265114:267822:-1 // ensembl // 11 // --- /// GENEFINDER00000019149 // cdna:GeneFinder chromosome:SGD1:IX:265114:267822:-1 // ensembl // 11 // --- /// YIL047C-A // cdna:known chromosome:SGD1:IX:265098:265466:-1 gene:YIL047C-A // ensembl // 9 // --- /// YIL047C // cdna:known chromosome:SGD1:IX:265114:267822:-1 gene:YIL047C // ensembl // 11 // --- --- No cerevisiae_gene 1.5379097555679 2.72292288952542 1.0564619049936 2.26803678561266 1.06015670598534 Max fold change below threshold 4 2.72292288952542 Max fold change at or above threshold -0.880258985207068 1.10802092926182 0.583075263219924 -0.81083720727468 2043.212890625 1004.39384754067 0.491575719862181 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776935_at YNR049C.S1 Probable component of the secretory vesicle docking complex, acts at a late step in secretion; shows genetic and physical interactions with Sec1p and is enriched in microsomal membrane fractions; required for sporulation 2.7225413862686 227.792518615723 609.572998046875 MSO1 6904 // vesicle docking during exocytosis // inferred from direct assay /// 6904 // vesicle docking during exocytosis // inferred from mutant phenotype /// 6904 // vesicle docking during exocytosis // inferred from physical interaction /// 30437 // sporulation (sensu Fungi) // inferred from genetic interaction /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from physical interaction 5792 // microsome // inferred from direct assay --- 611.705688476563 230.903167724609 224.681869506836 607.440307617188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR049C /GEN=MSO1 /DB_XREF=GI:6324377 /SEG=NC_001146:-713022,713654 /DEF=multicopy suppressor of sec1; small hydrophilic protein, enriched in microsomal membrane fraction, interacts with Sec1p /NOTE=Mso1p; go_component: microsome [goid GO:0005792] [evidence IDA] [pmid 9207091]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IGI,IMP,IPI] [pmid 11839791]; go_process: vesicle docking during exocytosis [goid GO:0006904] [evidence IDA,IMP,IPI] [pmid 9207091] --- --- --- --- --- --- S0005332 // MSO1 SGDID:S0005332, Chr XIV from 713655-713023, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020076 // cdna:Genscan chromosome:SGD1:XIV:713023:713385:-1 // ensembl // 9 // --- /// YNR049C // cdna:known chromosome:SGD1:XIV:713023:713655:-1 gene:YNR049C // ensembl // 11 // --- --- No cerevisiae_gene -1.06478878327138 -2.64918707917478 1.04882308111224 -2.7225413862686 -1.00702189302535 Max fold change below threshold 4 2.7225413862686 Max fold change at or above threshold 0.875615484974747 -0.851829972603234 -0.880051827136416 0.856266314764903 418.682758331299 220.442572633158 0.526514570391562 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773043_at YPR071W.S1 Hypothetical protein 2.72212544476401 72.6935062408447 178.207237243652 --- --- 16021 // integral to membrane // inferred from sequence similarity --- 171.612167358398 63.0434455871582 82.3435668945313 184.802307128906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR071W /GEN=MED1 /DB_XREF=GI:6325328 /SEG=NC_001148:+688167,688802 /DEF=Hypothetical ORF /NOTE=Ypr071wp; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 12524434]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0006275 // span:34-51,61-78,117-139,161-183 // numtm:4 S0006275 // YPR071W SGDID:S0006275, Chr XVI from 688169-688804, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017239 // cdna:Genscan chromosome:SGD1:XVI:688169:688804:1 // ensembl // 11 // --- /// YPR071W // cdna:known chromosome:SGD1:XVI:688169:688804:1 gene:YPR071W // ensembl // 11 // --- --- No cerevisiae_gene 1.88758075092638 -2.72212544476401 1.2638779561252 -2.08409926640907 1.07686016658109 Max fold change below threshold 4 2.72212544476401 Max fold change at or above threshold 0.748633598782961 -1.0120906497 -0.699088976380528 0.962546027297567 125.450371742249 61.6613997704541 0.491520263464377 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770674_at YDL044C.S1 Mitochondrial matrix protein that interacts with an N-terminal region of mitochondrial RNA polymerase (Rpo41p) and couples RNA processing and translation to transcription 2.72181726154769 174.956611633301 471.509552001953 MTF2 6397 // mRNA processing // inferred from mutant phenotype /// 6412 // protein biosynthesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 3723 // RNA binding // inferred from mutant phenotype 443.092712402344 162.79296875 187.120254516602 499.926391601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL044C /GEN=MTF2 /DB_XREF=GI:6320160 /SEG=NC_001136:-373964,375286 /DEF=Necessary for the stability and/or processing of some large mitochondrial transcripts /NOTE=Mtf2p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 8200349]; go_function: RNA binding [goid GO:0003723] [evidence IMP] [pmid 8413192]; go_process: mRNA processing [goid GO:0006397] [evidence IMP] [pmid 8413192]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP] [pmid 12637560] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 4.80000019073486 --- S0002202 // MTF2 SGDID:S0002202, Chr IV from 375286-373964, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023960 // cdna:GeneFinder chromosome:SGD1:IV:373964:375286:-1 // ensembl // 11 // --- /// GENSCAN00000025068 // cdna:Genscan chromosome:SGD1:IV:373964:375286:-1 // ensembl // 11 // --- /// YDL044C // cdna:known chromosome:SGD1:IV:373964:375286:-1 gene:YDL044C // ensembl // 11 // --- --- No cerevisiae_gene -1.46516026004889 -2.72181726154769 1.09403122555403 -2.36795697797125 1.12826588569033 Max fold change below threshold 4 2.72181726154769 Max fold change at or above threshold 0.692569612964228 -0.927050638059881 -0.786483386136499 1.02096441123215 323.233081817627 173.065101819458 0.535418902193632 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778925_at YMR231W.S1 Peripheral vacuolar membrane protein required for protein trafficking and vacuole biogenesis; forms complex with Pep3p that promotes vesicular docking/fusion reactions in conjunction with SNARE proteins, also interacts with Pep7p 2.72180934357267 135.37659072876 373.043991088867 PEP5 6895 // Golgi to endosome transport // inferred from genetic interaction /// 6904 // vesicle docking during exocytosis // inferred from mutant phenotype /// 42145 // homotypic vacuole fusion, non-autophagic // inferred from direct assay /// 45324 // late endosome to vacuole transport // inferred from genetic interaction 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 30897 // HOPS complex // inferred from physical interaction --- 345.915466308594 127.090263366699 143.66291809082 400.172515869141 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR231W /GEN=PEP5 /DB_XREF=GI:6323887 /SEG=NC_001145:+733544,736633 /DEF=peripheral vaculor membrane protein; putative Zn-finger protein /NOTE=Pep5p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 10944212]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi to endosome transport [goid GO:0006895] [evidence IGI] [pmid 11422941]; go_process: homotypic vacuole fusion, non-autophagic [goid GO:0042145] [evidence IDA] [pmid 10944212]; go_process: late endosome to vacuole transport [goid GO:0045324] [evidence IGI] [pmid 11422941]; go_process: vesicle docking during exocytosis [goid GO:0006904] [evidence IMP] [pmid 10978279] --- --- --- --- scop // a.4.5.Transcription factor MotA, activation domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Transcription factor MotA, activation domain // 2.59999990463257 --- S0004844 // PEP5 SGDID:S0004844, Chr XIII from 733544-736633, Verified ORF // sgd // 11 // --- /// GENSCAN00000018909 // cdna:Genscan chromosome:SGD1:XIII:733544:736633:1 // ensembl // 11 // --- /// GENEFINDER00000021872 // cdna:GeneFinder chromosome:SGD1:XIII:733544:736633:1 // ensembl // 11 // --- /// YMR231W // cdna:known chromosome:SGD1:XIII:733544:736633:1 gene:YMR231W // ensembl // 11 // --- --- No cerevisiae_gene -1.14759608355948 -2.72180934357267 -1.0187554151073 -2.40782709209564 1.15685060323999 Max fold change below threshold 4 2.72180934357267 Max fold change at or above threshold 0.658999326193354 -0.913492745973577 -0.794400576433307 1.04889399621353 254.210290908813 139.158223316413 0.547413807753084 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771718_at SPCC1840.08c.S1 --- 2.72115201154553 --- --- --- --- 7.56494569778442 11.3175354003906 20.5853672027588 4.52978610992432 0.00805663969367743 0.000732421875 0.00122069998178631 0.014160200022161 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1840.08c /DEF=protein disulfide isomerase oxidoreductase family --- --- --- --- --- --- SPCC1840.08c // |||protein disulfide isomerase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.38897890419383 1.49604978707319 1.52057155820219 2.72115201154553 -1.67004479112388 Max fold change below threshold 4 2.72115201154553 Max fold change at or above threshold PAPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1779506_at YEL040W.S1 Putative glycosidase, glycosylphosphatidylinositol (GPI)-anchored protein localized to the bud neck; has a role in cell wall maintenance 2.72074986661378 59.4115447998047 127.548099517822 UTR2 7047 // cell wall organization and biogenesis // traceable author statement 144 // septin ring (sensu Saccharomyces) // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 128.637786865234 61.9892387390137 56.8338508605957 126.45841217041 0.000732421991415322 0.014160200022161 0.014160200022161 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL040W /GEN=UTR2 /DB_XREF=GI:6320795 /SEG=NC_001137:+78053,79456 /DEF=(alias: Congo Red Hypersensitivity) /NOTE=Utr2p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_component: septin ring (sensu Saccharomyces) [goid GO:0000144] [evidence IDA] [pmid 12045225]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence TAS] [pmid 12045225] --- --- --- --- --- --- S0000766 // UTR2 SGDID:S0000766, Chr V from 78053-79456, Verified ORF // sgd // 11 // --- /// S66130 // UTR2 [Saccharomyces cerevisiae, mRNA, 1664 nt]. // gb // 10 // --- /// GENSCAN00000016770 // cdna:Genscan chromosome:SGD1:V:78053:79456:1 // ensembl // 11 // --- /// GENEFINDER00000019658 // cdna:GeneFinder chromosome:SGD1:V:78053:79456:1 // ensembl // 11 // --- /// YEL040W // cdna:known chromosome:SGD1:V:78053:79456:1 gene:YEL040W // ensembl // 11 // --- --- No cerevisiae_gene 2.72074986661378 -2.07516319738695 -1.27510020889915 -2.26340085912465 -1.01723392423975 Max fold change below threshold 4 2.72074986661378 Max fold change at or above threshold 0.892221682867178 -0.799152669043773 -0.92998358849899 0.836914574675586 93.4798221588135 39.4049655837099 0.421534451753284 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1771963_at YHR209W.S1 Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family 2.72031529878803 666.734436035156 1430.73907470703 --- --- --- 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from sequence similarity 1410.98059082031 518.682739257813 814.7861328125 1450.49755859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR209W /GEN=BAT1 /DB_XREF=GI:6322003 /SEG=NC_001140:+519435,520310 /DEF=Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family /NOTE=Yhr209wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: S-adenosylmethionine-dependent methyltransferase activity [goid GO:0008757] [evidence ISS] [pmid 9873020]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001252 // YHR209W SGDID:S0001252, Chr VIII from 519436-520311, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016731 // cdna:Genscan chromosome:SGD1:VIII:519529:520311:1 // ensembl // 11 // --- /// YHR209W // cdna:known chromosome:SGD1:VIII:519436:520311:1 gene:YHR209W // ensembl // 11 // --- --- No cerevisiae_gene -1.339378607283 -2.72031529878803 -1.13553447102061 -1.73171895543908 1.02800674086556 Max fold change below threshold 4 2.72031529878803 Max fold change at or above threshold 0.791535371974057 -1.15821571481065 -0.511203159111974 0.877883501948568 1048.73675537109 457.647059468483 0.436379346031927 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771849_at YPR020W.S1 Subunit g of the mitochondrial F1F0 ATP synthase, which is a large enzyme complex required for ATP synthesis; associated only with the dimeric form of ATP synthase 2.71966365066666 2110.10845947266 900.747192382813 ATP20 15986 // ATP synthesis coupled proton transport // inferred from mutant phenotype /// 15986 // ATP synthesis coupled proton transport // inferred from sequence similarity /// 15986 // ATP synthesis coupled proton transport // inferred from physical interaction 276 // proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota) // inferred from mutant phenotype /// 276 // proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota) // inferred from sequence similarity /// 276 // proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota) // inferred from physical interaction 5198 // structural molecule activity // inferred from mutant phenotype /// 5198 // structural molecule activity // inferred from physical interaction 854.040222167969 2322.7021484375 1897.51477050781 947.454162597656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR020W /GEN=ATP20 /DB_XREF=GI:6325277 /SEG=NC_001148:+599865,600212 /DEF=Subunit g of the mitochondrial F1F0 ATP synthase, which is a large enzyme complex required for ATP synthesis; associated only with the dimeric form of ATP synthase /NOTE=Atp20p; go_component: proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukarya) [goid GO:0000276] [evidence IMP,IPI,ISS] [pmid 10336613]; go_function: structural molecule activity [goid GO:0005198] [evidence IMP,IPI] [pmid 9857174]; go_process: ATP synthesis coupled proton transport [goid GO:0015986] [evidence ISS] [pmid 10336613]; go_process: ATP synthesis coupled proton transport [goid GO:0015986] [evidence IMP,IPI] [pmid 9857174] --- --- --- --- --- --- S0006224 // ATP20 SGDID:S0006224, Chr XVI from 599867-600214, Verified ORF // sgd // 11 // --- /// YPR020W // cdna:known chromosome:SGD1:XVI:599867:600214:1 gene:YPR020W // ensembl // 11 // --- --- No cerevisiae_gene -1.060745810869 2.71966365066666 1.53816472212624 2.22180960715293 1.10937885360078 Max fold change below threshold 4 2.71966365066666 Max fold change at or above threshold -0.90409193110286 1.13433402203819 0.544196175732502 -0.774438266667835 1505.42782592773 720.48823947048 0.47859367753248 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780027_at YKL023W.S1 Hypothetical protein 2.71849163726925 989.299255371094 404.502227783203 --- --- 5737 // cytoplasm // inferred from direct assay --- 371.831604003906 1010.82110595703 967.777404785156 437.1728515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL023W /GEN=URA6 /DB_XREF=GI:6322829 /SEG=NC_001143:+393364,394197 /DEF=Hypothetical ORF /NOTE=Ykl023wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001506 // YKL023W SGDID:S0001506, Chr XI from 393364-394197, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023000 // cdna:GeneFinder chromosome:SGD1:XI:393364:394197:1 // ensembl // 11 // --- /// YKL023W // cdna:known chromosome:SGD1:XI:393364:394197:1 gene:YKL023W // ensembl // 11 // --- --- No cerevisiae_gene 1.29137263096452 2.71849163726925 2.10783608053001 2.60273036063656 1.17572806306671 Max fold change below threshold 4 2.71849163726925 Max fold change at or above threshold -0.958508965446567 0.925635346193316 0.798715350689439 -0.765841731436188 696.900741577148 339.140424650899 0.486640929500798 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772208_at YBR048W.S1 Protein component of the small (40S) ribosomal subunit; identical to Rps11Bp and has similarity to E. coli S17 and rat S11 ribosomal proteins /// Protein component of the small (40S) ribosomal subunit; identical to Rps11Ap and has similarity to E. coli S17 and rat S11 ribosomal proteins 2.71837584542168 698.742126464844 1782.30334472656 RPS11A /// RPS11B 28 // ribosomal small subunit assembly and maintenance // inferred from mutant phenotype /// 28 // ribosomal small subunit assembly and maintenance // inferred from sequence similarity /// 6412 // protein biosynthesis // traceable author statement /// 6450 // regulation of translational fidelity // inferred from mutant phenotype /// 6450 // regulation of translational fidelity // inferred from sequence similarity 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 1755.80151367188 645.900939941406 751.583312988281 1808.80517578125 0.000732421991415322 0.00195312988944352 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR048W /GEN=RPS11B /DB_XREF=GI:6319522 /SEG=NC_001134:+332791,333772 /DEF=Protein component of the small (40S) ribosomal subunit; identical to Rps11Ap and has similarity to E. coli S17 and rat S11 ribosomal proteins /NOTE=Rps11bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: regulation of translational fidelity [goid GO:0006450] [evidence IMP,ISS] [pmid 8070651]; go_process: ribosomal small subunit assembly and maintenance [goid GO:0000028] [evidence IMP,ISS] [pmid 8070651] --- --- --- --- --- --- S0000252 // RPS11B SGDID:S0000252, Chr II from 332829-332873,333385-333810, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000021179 // cdna:Genscan chromosome:SGD1:II:333367:333810:1 // ensembl // 9 // --- /// GENEFINDER00000022365 // cdna:GeneFinder chromosome:SGD1:II:333367:333810:1 // ensembl // 9 // --- /// YBR048W // cdna:known chromosome:SGD1:II:332829:333810:1 gene:YBR048W // ensembl // 11 // --- --- No cerevisiae_gene 1.52351933733078 -2.71837584542168 -1.55482887346644 -2.33613690369314 1.03018773004617 Max fold change below threshold 4 2.71837584542168 Max fold change at or above threshold 0.821222148519321 -0.947674558627859 -0.779243974744302 0.90569638485284 1240.5227355957 627.453581232836 0.505797728029169 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773463_at SPBC947.14c.S1 --- 2.71827867843859 --- --- --- --- 6.14120674133301 2.81781911849976 2.64197850227356 2.25922632217407 0.129638999700546 0.5 0.366210997104645 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC947.14c /DEF=dubious --- --- --- --- --- --- SPBC947.14c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.60874522860149 -2.17941836685481 -2.5602005374236 -2.32447263898937 -2.71827867843859 Max fold change below threshold 3 2.71827867843859 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778488_at YAL021C.S1 Component of the CCR4-NOT transcriptional complex, which is involved in regulation of gene expression; component of the major cytoplasmic deadenylase, which is involved in mRNA poly(A) tail shortening 2.71720857621821 775.023040771484 354.712539672852 CCR4 288 // mRNA catabolism, deadenylylation-dependent decay // inferred from genetic interaction /// 288 // mRNA catabolism, deadenylylation-dependent decay // inferred from direct assay /// 288 // mRNA catabolism, deadenylylation-dependent decay // inferred from mutant phenotype /// 289 // poly(A) tail shortening // inferred from direct assay /// 289 // poly(A) tail shortening // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from physical interaction /// 7089 // traversing start control point of mitotic cell cycle // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 30015 // CCR4-NOT core complex // inferred from physical interaction 175 // 3'-5'-exoribonuclease activity // traceable author statement 366.766693115234 553.464477539063 996.581604003906 342.658386230469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL021C /GEN=CCR4 /DB_XREF=GI:6319298 /SEG=NC_001133:-110849,113362 /DEF=carbon catabolite repression; transcriptional regulator for some glucose-repressed genes including ADH2 /NOTE=Ccr4p; go_component: CCR4-NOT core complex [goid GO:0030015] [evidence IPI] [pmid 10490603]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11889048]; go_function: 3'-5'-exoribonuclease activity [goid GO:0000175] [evidence TAS] [pmid 11889048]; go_process: mRNA catabolism, deadenylation-dependent [goid GO:0000288] [evidence IDA,IGI,IMP] [pmid 11889048]; go_process: poly(A) tail shortening [goid GO:0000289] [evidence IMP] [pmid 11410650]; go_process: poly(A) tail shortening [goid GO:0000289] [evidence IDA] [pmid 11889048]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IPI] [pmid 10490603]; go_process: traversing start control point of mitotic cell cycle [goid GO:0007089] [evidence IMP] [pmid 15075273] --- --- --- --- --- --- S0000019 // CCR4 SGDID:S0000019, Chr I from 113360-110847, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018187 // cdna:GeneFinder chromosome:SGD1:I:110847:113360:-1 // ensembl // 11 // --- /// GENSCAN00000020361 // cdna:Genscan chromosome:SGD1:I:110847:113033:-1 // ensembl // 11 // --- /// YAL021C // cdna:known chromosome:SGD1:I:110847:113360:-1 gene:YAL021C // ensembl // 11 // --- --- No cerevisiae_gene 1.54682589613379 1.50903691073488 1.5265403478105 2.71720857621821 -1.07035668132911 Max fold change below threshold 4 2.71720857621821 Max fold change at or above threshold -0.654154266764029 -0.0376551455586902 1.42557228319566 -0.733762870872936 564.867790222168 302.835442909973 0.536117385611357 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772278_at YDR285W.S1 Synaptonemal complex (SC) protein that connects homologous chromosomes partially during zygotene and entirely during pachytene; potential Cdc28p substrate; synaptonemal complex protein 2.71692940577339 86.967456817627 257.464637756348 ZIP1 7129 // synapsis // inferred from mutant phenotype /// 7129 // synapsis // inferred from genetic interaction 802 // transverse filament // inferred from direct assay 3682 // chromatin binding // traceable author statement 233.106643676758 88.1370849609375 85.7978286743164 281.822631835938 0.00122069998178631 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR285W /GEN=ZIP1 /DB_XREF=GI:6320491 /SEG=NC_001136:+1032428,1035055 /DEF=Synaptonemal complex (SC) protein that connects homologous chromosomes partially during zygotene and entirely during pachytene; potential Cdc28p substrate /NOTE=Zip1p; go_component: synaptonemal complex [goid GO:0000795] [evidence IDA] [pmid 10662769]; go_function: chromatin binding [goid GO:0003682] [evidence TAS] [pmid 12734403]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 9611194]; go_process: synapsis [goid GO:0007129] [evidence IMP] [pmid 9611194] --- --- --- --- scop // a.2.6.Effector domain of the protein kinase pkn/prk1 // All alpha proteins; Long alpha-hairpin; Effector domain of the protein kinase pkn/prk1; Effector domain of the protein kinase pkn/prk1 // 2.79999995231628 /// scop // a.4.5.CAP C-terminal domain-like // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; CAP C-terminal domain-like // 3.79999995231628 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 3.20000004768372 --- S0002693 // ZIP1 SGDID:S0002693, Chr IV from 1032430-1035057, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023895 // cdna:GeneFinder chromosome:SGD1:IV:1032430:1035057:1 // ensembl // 10 // --- /// GENSCAN00000025319 // cdna:Genscan chromosome:SGD1:IV:1032457:1035057:1 // ensembl // 10 // --- /// YDR285W // cdna:known chromosome:SGD1:IV:1032430:1035057:1 gene:YDR285W // ensembl // 10 // --- --- No cerevisiae_gene -1.07332135951293 -2.6448190767833 1.11445002797365 -2.71692940577339 1.20898584180523 Max fold change below threshold 4 2.71692940577339 Max fold change at or above threshold 0.606297938780995 -0.837188409632541 -0.860480779045055 1.0913712498966 172.216047286987 100.430155695722 0.58316374854639 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778416_at YIL114C.S1 Putative mitochondrial porin (voltage-dependent anion channel), related to Por1p but not required for mitochondrial membrane permeability or mitochondrial osmotic stability 2.71649526602332 137.036376953125 309.402038574219 POR2 6811 // ion transport // inferred from genetic interaction /// 6811 // ion transport // inferred from sequence similarity 5739 // mitochondrion // inferred from direct assay /// 5741 // mitochondrial outer membrane // inferred from direct assay 8308 // voltage-gated ion-selective channel activity // inferred from genetic interaction /// 8308 // voltage-gated ion-selective channel activity // inferred from sequence similarity 303.734893798828 111.811309814453 162.261444091797 315.069183349609 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL114C /GEN=POR2 /DB_XREF=GI:6322077 /SEG=NC_001141:-149140,149985 /DEF=Putative mitochondrial porin (voltage-dependent anion channel), related to Por1p but not required for mitochondrial membrane permeability or mitochondrial osmotic stability /NOTE=Por2p; go_component: mitochondrial outer membrane [goid GO:0005741] [evidence IDA] [pmid 9315631]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11914276]; go_function: voltage-dependent ion-selective channel activity [goid GO:0008308] [evidence IGI,ISS] [pmid 9315631]; go_process: ion transport [goid GO:0006811] [evidence IGI,ISS] [pmid 9315631] --- --- --- --- --- --- S0001376 // POR2 SGDID:S0001376, Chr IX from 149985-149140, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016391 // cdna:Genscan chromosome:SGD1:IX:149140:149985:-1 // ensembl // 11 // --- /// YIL114C // cdna:known chromosome:SGD1:IX:149140:149985:-1 gene:YIL114C // ensembl // 11 // --- --- No cerevisiae_gene 1.18340434360835 -2.71649526602332 -1.03342511456906 -1.87188580441201 1.03731638933223 Max fold change below threshold 4 2.71649526602332 Max fold change at or above threshold 0.791467281236209 -1.09513699056862 -0.599213368964554 0.902883078296969 223.219207763672 101.7296456139 0.455738762954502 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777879_at YPL191C.S1 Hypothetical protein 2.71525856317797 209.002296447754 97.0302238464355 --- --- 5737 // cytoplasm // inferred from direct assay --- 89.8987808227539 173.906158447266 244.098434448242 104.161666870117 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL191C /GEN=PRM3 /DB_XREF=GI:6325065 /SEG=NC_001148:-183596,184678 /DEF=Hypothetical ORF /NOTE=Ypl191cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006112 // YPL191C SGDID:S0006112, Chr XVI from 184678-183596, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017041 // cdna:Genscan chromosome:SGD1:XVI:183596:184678:-1 // ensembl // 11 // --- /// GENEFINDER00000020906 // cdna:GeneFinder chromosome:SGD1:XVI:183596:184339:-1 // ensembl // 11 // --- /// YPL191C // cdna:known chromosome:SGD1:XVI:183596:184678:-1 gene:YPL191C // ensembl // 11 // --- --- No cerevisiae_gene 1.22866513573165 1.93446626145178 1.42833062595066 2.71525856317797 1.15865494411414 Max fold change below threshold 4 2.71525856317797 Max fold change at or above threshold -0.889568829483775 0.294419273042036 1.28369928658831 -0.688549730146574 153.016260147095 70.9528900208525 0.46369509980603 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773030_at YGR041W.S1 Protein involved in bud-site selection; diploid mutants display a unipolar budding pattern instead of the wild-type bipolar pattern, and bud at the distal pole 2.71524220278749 126.653221130371 101.558280944824 BUD9 282 // bud site selection // inferred from mutant phenotype 5935 // bud neck // inferred from direct assay --- 100.705116271973 106.337982177734 146.968460083008 102.411445617676 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR041W /GEN=BUD9 /DB_XREF=GI:6321478 /SEG=NC_001139:+577489,579132 /DEF=Protein involved in bud-site selection; diploid mutants display a unipolar budding pattern instead of the wild-type bipolar pattern, and bud at the distal pole /NOTE=Bud9p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 11514631]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: bud site selection [goid GO:0000282] [evidence IMP] [pmid 8657162] --- --- --- --- --- S0003273 // span:461-483,522-544 // numtm:2 S0003273 // BUD9 SGDID:S0003273, Chr VII from 577491-579134, Verified ORF // sgd // 11 // --- /// GENSCAN00000019374 // cdna:Genscan chromosome:SGD1:VII:577491:579134:1 // ensembl // 11 // --- /// GENEFINDER00000021392 // cdna:GeneFinder chromosome:SGD1:VII:577491:579134:1 // ensembl // 11 // --- /// YGR041W // cdna:known chromosome:SGD1:VII:577491:579134:1 gene:YGR041W // ensembl // 11 // --- --- No cerevisiae_gene 2.71524220278749 1.05593425750633 -1.09439548127713 1.45939417502972 1.01694381982634 Max fold change below threshold 4 2.71524220278749 Max fold change at or above threshold -0.608150995608416 -0.352518850666667 1.49138377203013 -0.530713925755045 114.105751037598 22.0350453462935 0.193110734085901 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776260_at YPL055C.S1 Protein of unknown function; null mutant forms abnormally large cells 2.71514940936701 731.129089355469 260.651695251465 LGE1 6513 // protein monoubiquitination // inferred from mutant phenotype /// 7126 // meiosis // inferred from expression pattern /// 8361 // regulation of cell size // inferred from genetic interaction /// 16571 // histone methylation // inferred from mutant phenotype /// 16574 // histone ubiquitination // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 269.995208740234 733.077331542969 729.180847167969 251.308181762695 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL055C /GEN=LGE1 /DB_XREF=GI:6325202 /SEG=NC_001148:-453987,454985 /DEF=large cell size mutant /NOTE=Lge1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: histone methylation [goid GO:0016571] [evidence IMP] [pmid 12535538]; go_process: histone ubiquitination [goid GO:0016574] [evidence IMP] [pmid 12535538]; go_process: meiosis [goid GO:0007126] [evidence IEP] [pmid 10051619]; go_process: protein monoubiquitination [goid GO:0006513] [evidence IMP] [pmid 12535538]; go_process: regulation of cell size [goid GO:0008361] [evidence IGI] [pmid 12089449] --- --- --- --- --- --- S0005976 // LGE1 SGDID:S0005976, Chr XVI from 454987-453989, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017147 // cdna:Genscan chromosome:SGD1:XVI:453989:454987:-1 // ensembl // 11 // --- /// YPL055C // cdna:known chromosome:SGD1:XVI:453989:454987:-1 gene:YPL055C // ensembl // 11 // --- --- No cerevisiae_gene 1.62954461426962 2.71514940936701 1.67563285255238 2.70071772965987 -1.07435900752004 Max fold change below threshold 4 2.71514940936701 Max fold change at or above threshold -0.831285443750246 0.872838663168222 0.85849975300801 -0.900052972425987 495.890392303467 271.742017452072 0.547988066858483 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774501_at YMR084W.S1 Hypothetical protein 2.71455487845526 406.491683959961 225.504165649414 --- --- --- --- 212.64241027832 285.596832275391 527.386535644531 238.365921020508 0.00292969006113708 0.00292969006113708 0.00195312988944352 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR084W /GEN=ADH3 /DB_XREF=GI:6323730 /SEG=NC_001145:+436627,437415 /DEF=Hypothetical ORF /NOTE=Ymr084wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004689 // YMR084W SGDID:S0004689, Chr XIII from 436627-437415, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018781 // cdna:Genscan chromosome:SGD1:XIII:436627:437415:1 // ensembl // 11 // --- /// YMR084W // cdna:known chromosome:SGD1:XIII:436627:437415:1 gene:YMR084W // ensembl // 11 // --- --- No cerevisiae_gene 1.17659860446523 1.34308500313546 2.71455487845526 2.48015687441773 1.12097074477532 Max fold change below threshold 4 2.71455487845526 Max fold change at or above threshold -0.717110231241469 -0.210931507559916 1.46667486776916 -0.538633128967777 315.997924804688 144.127792386168 0.456103604083003 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775541_at YNL031C.S1 One of two identical histone H3 proteins (see also HHT1); core histone required for chromatin assembly, involved in heterochromatin-mediated telomeric and HM silencing; regulated by acetylation, methylation, and mitotic phosphorylation /// One of two identical histone H3 proteins (see also HHT2); core histone required for chromatin assembly, involved in heterochromatin-mediated telomeric and HM silencing; regulated by acetylation, methylation, and mitotic phosphorylation 2.71442645533404 2234.00708007813 1443.73992919922 HHT2 /// HHT1 6333 // chromatin assembly or disassembly // traceable author statement 788 // nuclear nucleosome // traceable author statement /// 5634 // nucleus // inferred from direct assay 3677 // DNA binding // traceable author statement 1358.99755859375 2084.79858398438 2383.21557617188 1528.48229980469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL031C /GEN=HHT2 /DB_XREF=GI:6324297 /SEG=NC_001146:-575638,576048 /DEF=One of two identical histone H3 proteins (see also HHT1); core histone required for chromatin assembly, involved in heterochromatin-mediated telomeric and HM silencing; regulated by acetylation, methylation, and mitotic phosphorylation /NOTE=Hht2p; go_component: nuclear nucleosome [goid GO:0000788] [evidence TAS] [pmid 2275823]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 2275823]; go_process: chromatin assembly/disassembly [goid GO:0006333] [evidence TAS] [pmid 2275823] --- --- --- --- --- --- S0004976 // HHT2 SGDID:S0004976, Chr XIV from 576049-575639, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020510 // cdna:GeneFinder chromosome:SGD1:XIV:575639:576049:-1 // ensembl // 11 // --- /// YNL031C // cdna:known chromosome:SGD1:XIV:575639:576049:-1 gene:YNL031C // ensembl // 11 // --- --- No cerevisiae_gene 2.71442645533404 1.53407088246844 -1.1128600118894 1.75365699599781 1.12471305790006 Max fold change below threshold 4 2.71442645533404 Max fold change at or above threshold -1.00542251749116 0.515255274676392 1.14049012134905 -0.650322878534288 1838.87350463867 477.28784436056 0.259554473516842 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776905_at YNR015W.S1 Dihydrouridine synthase, member of a family of dihydrouridine synthases including Dus1p, Smm1p, Dus3p, and Dus4p; modifies uridine residues at position 20 of cytoplasmic tRNAs 2.71439386596451 275.154159545898 451.846389770508 SMM1 6400 // tRNA modification // inferred from direct assay /// 8033 // tRNA processing // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 17150 // tRNA dihydrouridine synthase activity // inferred from direct assay 425.679443359375 228.964630126953 321.343688964844 478.013336181641 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR015W /GEN=SMM1 /DB_XREF=GI:6324342 /SEG=NC_001146:+653386,654540 /DEF=Suppressor of Mitochondrial Mutation in the tRNAasp gene; Dihydrouridine synthase 2 /NOTE=Smm1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: tRNA dihydrouridine synthase activity [goid GO:0017150] [evidence IDA] [pmid 12003496]; go_process: tRNA modification [goid GO:0006400] [evidence IDA] [pmid 12003496]; go_process: tRNA processing [goid GO:0008033] [evidence IGI] [pmid 12559567] --- --- --- --- --- --- S0005298 // SMM1 SGDID:S0005298, Chr XIV from 653387-654541, Verified ORF // sgd // 11 // --- /// GENSCAN00000020049 // cdna:Genscan chromosome:SGD1:XIV:653387:654541:1 // ensembl // 11 // --- /// GENEFINDER00000020624 // cdna:GeneFinder chromosome:SGD1:XIV:653387:654541:1 // ensembl // 11 // --- /// YNR015W // cdna:known chromosome:SGD1:XIV:653387:654541:1 gene:YNR015W // ensembl // 11 // --- --- No cerevisiae_gene 2.71439386596451 -1.85914935037499 -1.07424498566419 -1.32468586742945 1.12294202512871 Max fold change below threshold 4 2.71439386596451 Max fold change at or above threshold 0.560981382374077 -1.21378258063308 -0.380337341467003 1.03313853972601 363.500274658203 110.839986236315 0.304924078367032 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773406_at SPAC1142.01.S1 --- 2.71404250698573 --- --- --- --- 11.2034206390381 10.2140474319458 8.69651985168457 4.12794589996338 0.24609400331974 0.334473013877869 0.274170011281967 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1142.01 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC1142.01 // ||SPAC17G6.18|conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.02690249026999 -1.09686397225823 -2.12516942588718 -1.28826482663268 -2.71404250698573 Max fold change below threshold 4 2.71404250698573 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772585_at SPAC1F8.05.S1 --- 2.71347324720769 --- --- --- --- 1.03866195678711 0.919633865356445 0.71165943145752 0.382779508829117 0.904784977436066 0.850341975688934 0.888427972793579 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F8.05 /GEN=isp3 /DEF=involved in sexual differentiation --- --- --- --- --- --- D14060 // Schizosaccharomyces pombe mRNA for ORF. // gb // 11 // --- /// AB061240 // Schizosaccharomyces pombe meu4 mRNA, partial cds. // gb // 9 // --- /// SPAC1F8.05 // |isp3|meu4|meiotic expression upregulated|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.85856522629362 -1.12942986977163 -2.13760953637373 -1.45949299745789 -2.71347324720769 Max fold change below threshold 0 2.71347324720769 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769823_at YER167W.S1 Protein rich in serine and threonine residues involved in protein kinase C signaling pathway, which controls cell integrity; overproduction suppresses pkc1 mutations 2.71342103882073 949.995971679688 1565.58489990234 BCK2 74 // regulation of cell cycle // inferred from mutant phenotype /// 82 // G1/S transition of mitotic cell cycle // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1562.06286621094 951.694091796875 948.2978515625 1569.10693359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER167W /GEN=BCK2 /DB_XREF=GI:6321015 /SEG=NC_001137:+518211,520766 /DEF=Rich in serine/threonine residues and functions in the protein kinase C mediated pathway /NOTE=Bck2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IGI] [pmid 12518319]; go_process: regulation of cell cycle [goid GO:0000074] [evidence IMP] [pmid 7891677] --- --- --- --- --- --- S0000969 // BCK2 SGDID:S0000969, Chr V from 518211-520766, Verified ORF // sgd // 11 // --- /// GENSCAN00000016946 // cdna:Genscan chromosome:SGD1:V:518211:520766:1 // ensembl // 11 // --- /// GENEFINDER00000019702 // cdna:GeneFinder chromosome:SGD1:V:518211:520766:1 // ensembl // 11 // --- /// YER167W // cdna:known chromosome:SGD1:V:518211:520766:1 gene:YER167W // ensembl // 11 // --- --- No cerevisiae_gene -2.71342103882073 -1.64134975689682 -1.11935761333759 -1.64722809783566 1.00450946471822 Max fold change below threshold 4 2.71342103882073 Max fold change at or above threshold 0.85608110229109 -0.861212746787918 -0.870768187218313 0.875899831715141 1257.79043579102 355.424771795116 0.282578688532952 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778639_at SPCC622.13c.S1 --- 2.71327727506902 --- --- --- --- 1.33883166313171 0.635463535785675 0.934719145298004 3.63262152671814 0.432372987270355 0.981445014476776 0.601073980331421 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC622.13c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC622.13c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.13372719421817 -2.10685836045086 1.45201280677101 -1.43233576616736 2.71327727506902 Max fold change below threshold 1 2.71327727506902 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-X58791-1_s_at AFFX-Sc-X58791-1 --- 2.71262591398012 --- --- --- --- 1.95970058441162 1.07097470760345 4.45350408554077 1.88737142086029 0.805419981479645 0.665526986122131 0.466064006090164 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL X58791 /FEA=CDS_1 /DB_XREF=CAA41597.1 GI:48447 SPTREMBL:Q56698 /PROD=luciferase alpha subunit /GEN=luxA --- --- --- --- --- --- AFFX-Sc-X58791-1 // --- // affx // --- // --- --- No No -2.71262591398012 -1.82982900576325 -2.1466844077522 2.2725431226413 -1.03832269724544 Max fold change below threshold 1 2.71262591398012 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769447_at SPCC1840.04.S1 --- 2.71259296353957 --- --- --- --- 1.68442749977112 3.9599142074585 4.56916618347168 3.18726348876953 0.466064006090164 0.303710997104645 0.334473013877869 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1840.04 /DEF=metacaspase-like protein --- --- --- --- --- --- AF316601 // Schizosaccharomyces pombe metacaspase mRNA, complete cds. // gb // 11 // --- /// SPCC1840.04 // |||metacaspase-like protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.60266062608807 2.35089619944852 2.62853041351303 2.71259296353957 1.89219392891806 Max fold change below threshold 3 2.71259296353957 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769344_at YLR050C.S1 Hypothetical protein 2.71219243024109 586.733184814453 1428.15777587891 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 1394.39086914063 514.119445800781 659.346923828125 1461.92468261719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR050C /GEN=RPS0B /DB_XREF=GI:6323079 /SEG=NC_001144:-245588,246073 /DEF=Hypothetical ORF /NOTE=Ylr050cp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004040 // span:12-31,62-84,105-127 // numtm:3 S0004040 // YLR050C SGDID:S0004040, Chr XII from 246073-245588, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YLR050C // cdna:known chromosome:SGD1:XII:245588:246073:-1 gene:YLR050C // ensembl // 11 // --- --- No cerevisiae_gene -1.2741277943647 -2.71219243024109 1.23527114511702 -2.11480605846295 1.04843248401231 Max fold change below threshold 4 2.71219243024109 Max fold change at or above threshold 0.789398885826741 -1.00642373135304 -0.710148306793684 0.927173152319986 1007.44548034668 490.177267464339 0.486554634495615 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770514_at YDL112W.S1 2'-O-ribose methyltransferase, catalyzes the ribose methylation of the guanosine nucleotide at position 18 of tRNAs 2.71198804836089 366.644088745117 966.767211914063 TRM3 30488 // tRNA methylation // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 16424 // tRNA (guanosine) methyltransferase activity // inferred from direct assay 929.259460449219 342.648803710938 390.639373779297 1004.27496337891 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL112W /GEN=TRM3 /DB_XREF=GI:6320091 /SEG=NC_001136:+258915,263225 /DEF=Trna ribose methylase /NOTE=Trm3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: tRNA (guanosine) methyltransferase activity [goid GO:0016424] [evidence IDA] [pmid 9917067]; go_process: tRNA methylation [goid GO:0030488] [evidence IDA] [pmid 9917067] --- --- --- --- --- --- S0002270 // TRM3 SGDID:S0002270, Chr IV from 258915-263225, Verified ORF // sgd // 10 // --- /// GENSCAN00000025014 // cdna:Genscan chromosome:SGD1:IV:258915:263225:1 // ensembl // 10 // --- /// GENEFINDER00000023455 // cdna:GeneFinder chromosome:SGD1:IV:260160:263225:1 // ensembl // 10 // --- /// YDL112W // cdna:known chromosome:SGD1:IV:258915:263225:1 gene:YDL112W // ensembl // 10 // --- --- No cerevisiae_gene -1.48208231526278 -2.71198804836089 -1.26796763727417 -2.37881668572977 1.08072611162164 Max fold change below threshold 4 2.71198804836089 Max fold change at or above threshold 0.753634681316922 -0.930173049931133 -0.792420876526351 0.968959245140561 666.70565032959 348.383396662207 0.522544538943057 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770347_at YCR007C.S1 Putative integral membrane protein, member of DUP240 gene family 2.71158820561559 412.378051757813 164.928092956543 --- --- --- --- 162.557601928711 440.789276123047 383.966827392578 167.298583984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR007C /GEN=CIT2 /DB_XREF=GI:6319852 /SEG=NC_001135:-126008,126727 /DEF=Putative integral membrane protein, member of DUP240 gene family /NOTE=Ycr007cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000600 // span:56-75,82-104 // numtm:2 S0000600 // YCR007C SGDID:S0000600, Chr III from 126727-126008, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023372 // cdna:GeneFinder chromosome:SGD1:III:126008:126583:-1 // ensembl // 10 // --- /// YCR007C // cdna:known chromosome:SGD1:III:126008:126727:-1 gene:YCR007C // ensembl // 11 // --- GENSCAN00000022465 // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene 1.51905982845812 2.71158820561559 1.86471949030237 2.36203550518028 1.02916493599446 Max fold change below threshold 4 2.71158820561559 Max fold change at or above threshold -0.871129835955296 1.05103209321549 0.658474531290752 -0.838376788550944 288.653072357178 144.749341859229 0.501464753786222 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773459_at YDR101C.S1 Protein associated with the ribosomal export complex 2.71130069577866 131.093250274658 313.791152954102 ARX1 42273 // ribosomal large subunit biogenesis // inferred from direct assay 5654 // nucleoplasm // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 294.563049316406 108.642707824707 153.543792724609 333.019256591797 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR101C /GEN=ARX1 /DB_XREF=GI:6320306 /SEG=NC_001136:-655680,657461 /DEF=Arx1p /NOTE=go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12374754]; go_component: nucleoplasm [goid GO:0005654] [evidence IDA] [pmid 12374754]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ribosomal large subunit biogenesis [goid GO:0042273] [evidence IDA] [pmid 12374754] --- --- --- --- scop // a.4.5.CAP C-terminal domain-like // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; CAP C-terminal domain-like // 3.5 --- S0002508 // ARX1 SGDID:S0002508, Chr IV from 657462-655681, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023777 // cdna:GeneFinder chromosome:SGD1:IV:655681:657462:-1 // ensembl // 11 // --- /// GENSCAN00000025171 // cdna:Genscan chromosome:SGD1:IV:655681:657462:-1 // ensembl // 11 // --- /// YDR101C // cdna:known chromosome:SGD1:IV:655681:657462:-1 gene:YDR101C // ensembl // 11 // --- --- No cerevisiae_gene 1.81597809089329 -2.71130069577866 -1.43130402288368 -1.91843020215558 1.13055339888909 Max fold change below threshold 4 2.71130069577866 Max fold change at or above threshold 0.666510498681226 -1.05168699165602 -0.636730076401663 1.02190656937645 222.44220161438 108.20661916763 0.486448247600129 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779085_at SPBC14F5.02.S1 --- 2.71043677854751 --- --- --- --- 1.86320686340332 2.57349562644959 0.885386884212494 4.56816339492798 0.466064006090164 0.432372987270355 0.601073980331421 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14F5.02 /DEF=sequence orphan --- --- --- --- --- --- SPBC14F5.02 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.71043677854751 1.38121841272571 1.57463067777576 -2.10439853653417 2.45177467121595 Max fold change below threshold 2 2.71043677854751 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773787_at SPAC18B11.09c.S1 --- 2.71043133196333 --- --- --- --- 1.62969350814819 0.849479794502258 4.03463220596313 0.601267218589783 0.567627012729645 0.943848013877869 0.432372987270355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18B11.09c /DEF=acetyltransferase (predicted) --- --- --- --- --- --- SPAC18B11.09c // |||acetyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.49814934832191 -1.91846059046418 1.73391388690982 2.47569999253887 -2.71043133196333 Max fold change below threshold 1 2.71043133196333 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770352_at YJL088W.S1 Ornithine carbamoyltransferase (carbamoylphosphate:L-ornithine carbamoyltransferase), catalyzes the sixth step in the biosynthesis of the arginine precursor ornithine 2.71042791538726 361.997482299805 705.148773193359 ARG3 6526 // arginine biosynthesis // traceable author statement /// 6591 // ornithine metabolism // traceable author statement 5829 // cytosol // inferred from direct assay 4585 // ornithine carbamoyltransferase activity // inferred from direct assay 684.994079589844 414.769317626953 309.225646972656 725.303466796875 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL088W /GEN=ARG3 /DB_XREF=GI:6322373 /SEG=NC_001142:+268715,269731 /DEF=Ornithine carbamoyltransferase (carbamoylphosphate:L-ornithine carbamoyltransferase), catalyzes the sixth step in the biosynthesis of the arginine precursor ornithine /NOTE=Arg3p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 205532]; go_function: ornithine carbamoyltransferase activity [goid GO:0004585] [evidence IDA] [pmid 7029528]; go_process: arginine biosynthesis [goid GO:0006526] [evidence TAS] [pmid 205532]; go_process: ornithine metabolism [goid GO:0006591] [evidence TAS] [pmid 205532] --- --- --- --- --- --- S0003624 // ARG3 SGDID:S0003624, Chr X from 268715-269731, Verified ORF // sgd // 11 // --- /// GENSCAN00000024070 // cdna:Genscan chromosome:SGD1:X:268715:269731:1 // ensembl // 11 // --- /// GENEFINDER00000024446 // cdna:GeneFinder chromosome:SGD1:X:268715:269731:1 // ensembl // 11 // --- /// YJL088W // cdna:known chromosome:SGD1:X:268715:269731:1 gene:YJL088W // ensembl // 11 // --- --- No cerevisiae_gene 2.71042791538726 -1.65150615168196 -1.27885928772999 -2.21519167732687 1.05884632934516 Max fold change below threshold 4 2.71042791538726 Max fold change at or above threshold 0.744388296095741 -0.584041803383816 -1.10289650747633 0.942550014764403 533.573127746582 203.41662091875 0.381234755539192 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-BioB-M_at AFFX-BioB-M --- 2.70920155013212 --- --- --- --- 441.539001464844 514.808776855469 185.485168457031 162.9775390625 4.42872878920753E-5 4.42872878920753E-5 4.42872878920753E-5 4.42872878920753E-5 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2482-2739 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --- --- --- --- --- --- J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioB gene biotin synthetase corresponding to nucleotides 2393-2682 of J04423 /LEN=1114 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-BioB-M // E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2482-2739 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioB gene biotin synthetase /LEN=1114 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-BioB-M // --- // unknown // --- // --- /// AFFX-BioB-M // --- // unknown // --- // --- /// AFFX-BioB-M // --- // unknown // --- // --- /// AFFX-BioB-M // --- // unknown // --- // --- /// AFFX-BioB-M // --- // gb // --- // --- /// AFFX-BioB-M // E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2482-2739 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-BioB-M // --- // unknown // --- // --- /// AFFX-BioB-M // --- // affx // --- // --- /// AFFX-BioB-M // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-BioB-M // --- // affx // --- // --- /// AFFX-BioB-M // --- // affx // --- // --- /// AFFX-BioB-M // --- // affx // --- // --- /// AFFX-BioB-M // --- // affx // --- // --- /// AFFX-BioB-M // --- // affx // --- // --- /// AFFX-BioB-M // --- // affx // --- // --- /// AFFX-BioB-M // --- // affx // --- // --- /// AFFX-BioB-M // --- // affx // --- // --- /// AFFX-BioB-M // --- // affx // --- // --- /// AFFX-BioB-M // --- // affx // --- // --- /// AFFX-BioB-M // --- // affx // --- // --- --- AFFX_control No -1.45571105257195 1.16594179709504 -1.84551777588089 -2.38045448667304 -2.70920155013212 Max fold change below threshold 4 2.70920155013212 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776361_at SPAC12B10.04.S1 --- 2.70891243975965 --- --- --- --- 2.57820558547974 5.19615697860718 4.03129959106445 0.951749324798584 0.828612983226776 0.828612983226776 0.753906011581421 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12B10.04 /DEF=tubulin-tyrosine ligase activity (predicted) --- --- --- --- --- --- SPAC12B10.04 // |||tubulin-tyrosine ligase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.42130008616011 2.0154160738273 -1.11459254642419 1.56360672468031 -2.70891243975965 Max fold change below threshold 3 2.70891243975965 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779253_at YOR087W.S1 Vacuolar cation channel, mediates release of Ca(2+) from the vacuole in response to hyperosmotic shock 2.70836202794217 369.443359375 1000.60412597656 YVC1 30003 // cation homeostasis // inferred from mutant phenotype /// 30003 // cation homeostasis // inferred from direct assay 324 // vacuole (sensu Fungi) // inferred from direct assay 5227 // calcium activated cation channel activity // inferred from direct assay /// 5244 // voltage-gated ion channel activity // inferred from direct assay /// 5262 // calcium channel activity // inferred from direct assay /// 5267 // potassium channel activity // inferred from direct assay /// 5272 // sodium channel activity // inferred from direct assay /// 15281 // nonselective cation channel activity // inferred from direct assay 945.379272460938 349.059417724609 389.827301025391 1055.82897949219 0.00195312988944352 0.0239257998764515 0.00415039015933871 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR087W /GEN=YVC1 /DB_XREF=GI:27808717 /SEG=NC_001147:+487708,489735 /DEF=Vacuolar cation channel, mediates release of Ca(2+) from the vacuole in response to hyperosmotic shock /NOTE=Yvc1p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 11427713]; go_function: calcium activated cation channel activity [goid GO:0005227] [evidence IDA] [pmid 1700419]; go_function: calcium channel activity [goid GO:0005262] [evidence IDA] [pmid 11781332]; go_function: nonselective cation channel activity [goid GO:0015281] [evidence IDA] [pmid 1700419]; go_function: potassium channel activity [goid GO:0005267] [evidence IDA] [pmid 1700419]; go_function: sodium channel activity [goid GO:0005272] [evidence IDA] [pmid 1700419]; go_function: voltage-gated ion channel activity [goid GO:0005244] [evidence IDA] [pmid 1700419]; go_process: cation homeostasis [goid GO:0030003] [evidence IDA,IMP] [pmid 11427713] --- --- --- --- --- S0005613 // span:238-255,299-321,336-355,376-395,405-427,440-462,519-537 // numtm:7 S0005613 // YVC1 SGDID:S0005613, Chr XV from 487708-489735, Verified ORF // sgd // 11 // --- /// GENSCAN00000017527 // cdna:Genscan chromosome:SGD1:XV:487708:489735:1 // ensembl // 11 // --- /// GENEFINDER00000022537 // cdna:GeneFinder chromosome:SGD1:XV:488428:489735:1 // ensembl // 11 // --- /// YOR087W // cdna:known chromosome:SGD1:XV:487708:489735:1 gene:YOR087W // ensembl // 11 // --- --- No cerevisiae_gene -1.37170524625143 -2.70836202794217 -1.09522007114892 -2.42512330453572 1.11683110710026 Max fold change below threshold 4 2.70836202794217 Max fold change at or above threshold 0.70834051452594 -0.914046815117199 -0.80313100911439 1.00883730970565 685.023742675781 367.557021582198 0.536560995895527 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1771048_at SPAC6C3.04.S1 --- 2.70710016237759 --- --- --- --- 13.5207748413086 12.9024362564087 8.51183319091797 4.99456024169922 0.111571997404099 0.0239257998764515 0.24609400331974 0.171387001872063 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6C3.04 /GEN=cit1 /DEF=citrate synthase (predicted) --- --- --- --- --- --- SPAC6C3.04 // |cit1||citrate synthase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.70239244113337 -1.04792417281603 -1.52948651975459 -1.58846802304997 -2.70710016237759 Max fold change below threshold 4 2.70710016237759 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1769553_at SPBC1105.12.S1 --- 2.70681831189972 --- --- --- --- 9.51641368865967 12.1902751922607 17.6257190704346 8.66147994995117 0.366210997104645 0.171387001872063 0.014160200022161 0.0375977009534836 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1105.12 /GEN=h4.3 /DEF=histone H4 --- --- --- --- --- --- SPBC1105.12 // |h4.3|hhf3|histone H4|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.70681831189972 1.28097365153297 1.04747169541311 1.8521388042891 -1.09870527249946 Max fold change below threshold 4 2.70681831189972 Max fold change at or above threshold APAAPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1771104_at YIL073C.S1 Meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis 2.70633547463355 62.9671497344971 24.1978759765625 SPO22 7126 // meiosis // inferred from expression pattern --- --- 25.8300685882568 56.029468536377 69.9048309326172 22.5656833648682 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL073C /GEN=SPO22 /DB_XREF=GI:37362662 /SEG=NC_001141:-222934,225951 /DEF=Meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis /NOTE=Spo22p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiosis [goid GO:0007126] [evidence IEP] [pmid 11101837] --- --- --- --- --- --- S0001335 // SPO22 SGDID:S0001335, Chr IX from 225951-225897,225806-222934, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000016422 // cdna:Genscan chromosome:SGD1:IX:222934:225594:-1 // ensembl // 11 // --- /// YIL073C // cdna:known chromosome:SGD1:IX:222934:225951:-1 gene:YIL073C // ensembl // 11 // --- --- No cerevisiae_gene 1.50037389988994 2.1691567850443 1.25420990895628 2.70633547463355 -1.14466148312933 Max fold change below threshold 4 2.70633547463355 Max fold change at or above threshold -0.767589382322047 0.538187918182325 1.13813802594631 -0.908736561806591 43.5825128555298 23.1275271338039 0.530660708125495 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770655_at SPCC364.01.S1 --- 2.70571120204986 --- --- --- --- 5.534104347229 14.9736881256104 8.7646541595459 5.92893266677856 0.171387001872063 0.0676269978284836 0.111571997404099 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC364.01 /DEF=hypothetical protein --- --- --- --- --- --- SPCC364.01 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.29919074404263 2.70571120204986 1.52160589936565 1.58375296337419 1.07134457443818 Max fold change below threshold 4 2.70571120204986 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1772273_at SPBC4C3.07.S1 --- 2.70537652626208 --- --- --- --- 12.9136619567871 11.9183120727539 8.35710906982422 14.100474357605 0.0561522990465164 0.219482004642487 0.274170011281967 0.111571997404099 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4C3.07 /DEF=COP9signalosome complex (subunit 6) (predicted) --- --- --- --- --- --- SPBC4C3.07 // |||eukaryotic translation initiation factor eIF3f |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.70537652626208 -1.08351433306639 1.09333513822805 -1.54523075490491 1.09190362925631 Max fold change below threshold 4 2.70537652626208 Max fold change at or above threshold MAAAAA No 4 0 MAAA 3 0 1 No No x = 1
1777287_at SPBC3H7.13.S1 --- 2.70507344587696 --- --- --- --- 12.5789194107056 16.8049945831299 19.1486473083496 8.92681503295898 0.129638999700546 0.0676269978284836 0.030273400247097 0.0676269978284836 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3H7.13 /DEF=FHA domain (phosphopeptide binding) --- --- --- --- --- --- SPBC3H7.13 // |||FHA domain |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.30390172480418 1.33596488175508 -2.70507344587696 1.52228078447285 -1.40911617013039 Max fold change below threshold 4 2.70507344587696 Max fold change at or above threshold AMAAPA No 4 0 AAPA 3 1 0 No No x = 1
1777381_at YKL032C.S1 Protein that binds DNA containing intrastrand cross-links formed by cisplatin, contains two HMG (high mobility group box) domains, which confer the ability to bend cisplatin-modified DNA; mediates aerobic transcriptional repression of COX5b 2.7046017001105 1566.53259277344 669.367431640625 IXR1 6281 // DNA repair // inferred from mutant phenotype 228 // nuclear chromosome // inferred from physical interaction 3677 // DNA binding // inferred from direct assay 625.24658203125 1442.02221679688 1691.04296875 713.48828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL032C /GEN=IXR1 /DB_XREF=GI:6322820 /SEG=NC_001143:-379708,381501 /DEF=intrastrand crosslink recognition protein /NOTE=Ixr1p; go_component: nuclear chromosome [goid GO:0000228] [evidence IPI] [pmid 8634251]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 8634251]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 8538651] --- --- --- --- --- --- S0001515 // IXR1 SGDID:S0001515, Chr XI from 381501-379708, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022991 // cdna:GeneFinder chromosome:SGD1:XI:379708:381501:-1 // ensembl // 11 // --- /// YKL032C // cdna:known chromosome:SGD1:XI:379708:381501:-1 gene:YKL032C // ensembl // 11 // --- --- No cerevisiae_gene 2.26537928395438 2.30632562934155 -1.19670568444663 2.7046017001105 1.14113103814511 Max fold change below threshold 4 2.7046017001105 Max fold change at or above threshold -0.931230449395443 0.612510257152267 1.08317007510273 -0.764449882859551 1117.95001220703 529.088616567087 0.473266792602446 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771405_at YHR063C.S1 2-dehydropantoate 2-reductase, part of the pantothenic acid pathway, structurally homologous to E. coli panE 2.70443321493292 237.347503662109 575.511993408203 PAN5 15940 // pantothenate biosynthesis // inferred from sequence similarity 5625 // soluble fraction // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8677 // 2-dehydropantoate 2-reductase activity // inferred from sequence similarity 562.507995605469 207.994781494141 266.700225830078 588.515991210938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR063C /GEN=PAN5 /DB_XREF=GI:6321854 /SEG=NC_001140:-224031,225170 /DEF=ketopantoate reductase /NOTE=Pan5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 11935221]; go_function: 2-dehydropantoate 2-reductase activity [goid GO:0008677] [evidence ISS] [pmid 11154694]; go_process: pantothenate biosynthesis [goid GO:0015940] [evidence ISS] [pmid 11154694] --- --- --- --- --- S0001105 // span:7-29 // numtm:1 S0001105 // PAN5 SGDID:S0001105, Chr VIII from 225170-224031, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016608 // cdna:Genscan chromosome:SGD1:VIII:224031:225122:-1 // ensembl // 11 // --- /// GENEFINDER00000020117 // cdna:GeneFinder chromosome:SGD1:VIII:224031:225170:-1 // ensembl // 11 // --- /// YHR063C // cdna:known chromosome:SGD1:VIII:224031:225170:-1 gene:YHR063C // ensembl // 11 // --- --- No cerevisiae_gene 1.27882644029257 -2.70443321493292 -1.31286124182714 -2.10913955492433 1.04623577941763 Max fold change below threshold 4 2.70443321493292 Max fold change at or above threshold 0.792310771985495 -1.00732911136781 -0.709318614744253 0.924336954126568 406.429748535156 196.991196622491 0.484686953483306 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776410_at YPR196W.S1 nuclear protein (putative) 2.70356704660184 79.7777938842773 37.9730339050293 --- --- --- --- 37.7722816467285 72.1470260620117 87.408561706543 38.1737861633301 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR196W /GEN=OPT2 /DB_XREF=GI:6325454 /SEG=NC_001148:+931370,932782 /DEF=nuclear protein (putative) /NOTE=Ypr196wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006400 // YPR196W SGDID:S0006400, Chr XVI from 931372-932784, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017335 // cdna:Genscan chromosome:SGD1:XVI:931372:932784:1 // ensembl // 11 // --- /// GENEFINDER00000020982 // cdna:GeneFinder chromosome:SGD1:XVI:931576:932784:1 // ensembl // 11 // --- /// YPR196W // cdna:known chromosome:SGD1:XVI:931372:932784:1 gene:YPR196W // ensembl // 11 // --- --- No cerevisiae_gene 2.70356704660184 1.91005210478887 1.08033598413699 2.31409271285346 1.01062960719071 Max fold change below threshold 4 2.70356704660184 Max fold change at or above threshold -0.846572419710562 0.532403469493756 1.1446346305983 -0.830465680381497 58.8754138946533 24.9277341862139 0.423398028773394 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773309_at YPR070W.S1 Subunit 1 of the Mediator complex essential for transcriptional regulation 2.70276133233917 159.336540222168 399.412704467773 MED1 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from direct assay 369.919342041016 136.8671875 181.805892944336 428.906066894531 0.00122069998178631 0.014160200022161 0.0107421996071935 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR070W /GEN=MED1 /DB_XREF=GI:6325327 /SEG=NC_001148:+685893,687593 /DEF=Subunit 1 of the Mediator complex essential for transcriptional regulation /NOTE=Med1p; go_component: mediator complex [goid GO:0000119] [evidence IDA] [pmid 9420330]; go_function: RNA polymerase II transcription mediator activity [goid GO:0016455] [evidence IDA] [pmid 9420330]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IDA] [pmid 9420330] --- --- --- --- --- --- S0006274 // MED1 SGDID:S0006274, Chr XVI from 685895-687595, Verified ORF // sgd // 11 // --- /// GENSCAN00000017238 // cdna:Genscan chromosome:SGD1:XVI:685895:687595:1 // ensembl // 11 // --- /// GENEFINDER00000021045 // cdna:GeneFinder chromosome:SGD1:XVI:685895:687595:1 // ensembl // 11 // --- /// YPR070W // cdna:known chromosome:SGD1:XVI:685895:687595:1 gene:YPR070W // ensembl // 11 // --- --- No cerevisiae_gene 1.39225082141121 -2.70276133233917 -1.02863376683859 -2.03469390375743 1.15945834172406 Max fold change below threshold 4 2.70276133233917 Max fold change at or above threshold 0.638198140263145 -1.00445371300547 -0.687706382662125 1.05396195540445 279.374622344971 141.875561810179 0.50783267506306 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Ec-bioD-5_at AFFX-r2-Ec-bioD-5 --- 2.70258251536086 --- --- --- --- 2240.748046875 2617.2783203125 829.113647460938 1228.47436523438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5024-5244 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --- --- --- --- --- --- J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// AFFX-r2-Ec-bioD-5 // E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5024-5244 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// AFFX-r2-Ec-bioD-5 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioD-5 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioD-5 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioD-5 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioD-5 // --- // gb // --- // --- /// AFFX-r2-Ec-bioD-5 // E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5024-5244 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-5 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioD-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-5 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-5 // --- // affx // --- // --- 957997 // gb // 5 // Cross Hyb Matching Probes /// 16445223 // gb // 5 // Cross Hyb Matching Probes /// 917592 // gb // 5 // Cross Hyb Matching Probes /// 15829254 // gb // 4 // Cross Hyb Matching Probes /// 1036660 // gb // 6 // Cross Hyb Matching Probes /// 26245917 // gb // 6 // Cross Hyb Matching Probes AFFX_control No -1.86693262052492 1.16803775594611 -1.70105635551786 -2.70258251536086 -1.82400879520795 Max fold change below threshold 4 2.70258251536086 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770996_at YCR054C.S1 Essential protein of unknown function 2.7025185262972 50.488597869873 121.409854888916 CTR86 --- 5737 // cytoplasm // inferred from direct assay --- 107.989555358887 39.9588584899902 61.0183372497559 134.830154418945 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR054C /GEN=CTR86 /DB_XREF=GI:6319902 /SEG=NC_001135:-218371,220062 /DEF=Essential protein of unknown function /NOTE=Ctr86p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000650 // CTR86 SGDID:S0000650, Chr III from 220062-218371, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022497 // cdna:Genscan chromosome:SGD1:III:218371:220005:-1 // ensembl // 11 // --- /// GENEFINDER00000023342 // cdna:GeneFinder chromosome:SGD1:III:218371:220062:-1 // ensembl // 11 // --- /// YCR054C // cdna:known chromosome:SGD1:III:218371:220062:-1 gene:YCR054C // ensembl // 11 // --- --- No cerevisiae_gene -1.65289318639659 -2.7025185262972 1.20454625898492 -1.76978856236072 1.2485481023684 Max fold change below threshold 4 2.7025185262972 Max fold change at or above threshold 0.509598582497198 -1.06335192667823 -0.576431766180986 1.13018511036202 85.9492263793945 43.2503734046658 0.50320840834275 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769828_at YKL194C.S1 Mitochondrial threonyl-tRNA synthetase 2.70227379340381 221.240943908691 598.32177734375 MST1 6435 // threonyl-tRNA aminoacylation // inferred from mutant phenotype /// 6435 // threonyl-tRNA aminoacylation // traceable author statement 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 4829 // threonine-tRNA ligase activity // inferred from sequence similarity /// 4829 // threonine-tRNA ligase activity // inferred from mutant phenotype 579.608947753906 214.489349365234 227.992538452148 617.034606933594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL194C /GEN=MST1 /DB_XREF=GI:6322654 /SEG=NC_001143:-77263,78651 /DEF=mitochondrial threonine-tRNA synthetase /NOTE=Mst1p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 2999113]; go_function: threonine-tRNA ligase activity [goid GO:0004829] [evidence IMP,ISS] [pmid 2999113]; go_process: threonyl-tRNA aminoacylation [goid GO:0006435] [evidence IMP,TAS] [pmid 2999113] --- --- --- --- --- --- S0001677 // MST1 SGDID:S0001677, Chr XI from 78651-77263, reverse complement, Verified ORF // sgd // 11 // --- /// M12087 // Yeast (S.cerevisiae) nuclear MST1 gene encoding mitochondrial threonyl-tRNA-1 synthetase, complete cds. // gb // 11 // --- /// GENSCAN00000018272 // cdna:Genscan chromosome:SGD1:XI:77263:78651:-1 // ensembl // 11 // --- /// GENEFINDER00000023096 // cdna:GeneFinder chromosome:SGD1:XI:77263:78651:-1 // ensembl // 11 // --- /// YKL194C // cdna:known chromosome:SGD1:XI:77263:78651:-1 gene:YKL194C // ensembl // 11 // --- --- No cerevisiae_gene 1.10678133713579 -2.70227379340381 1.06046694122235 -2.54222770485779 1.06457053384824 Max fold change below threshold 4 2.70227379340381 Max fold change at or above threshold 0.777909362444872 -0.894551271321952 -0.83269879263322 0.9493407015103 409.781360626221 218.31282065296 0.532754394488168 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779095_at YIR028W.S1 Allantoin permease; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation 2.70126213918008 243.503562927246 470.538436889648 DAL4 15720 // allantoin transport // traceable author statement 16020 // membrane // inferred from sequence similarity 5274 // allantoin permease activity // inferred from sequence similarity /// 5274 // allantoin permease activity // traceable author statement 447.129943847656 229.506973266602 257.500152587891 493.946929931641 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR028W /GEN=DAL4 /DB_XREF=GI:6322219 /SEG=NC_001141:+408465,410372 /DEF=Allantoin permease; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation /NOTE=Dal4p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 1293888]; go_function: allantoin permease activity [goid GO:0005274] [evidence ISS,TAS] [pmid 1293888]; go_process: allantoin transport [goid GO:0015720] [evidence TAS] [pmid 3028908] --- --- --- --- --- S0001467 // span:143-165,185-207,241-263,270-290,310-332,352-374,404-426,439-461,471-493,517-539,559-581 // numtm:11 S0001467 // DAL4 SGDID:S0001467, Chr IX from 408465-410372, Verified ORF // sgd // 11 // --- /// GENSCAN00000016497 // cdna:Genscan chromosome:SGD1:IX:408465:410372:1 // ensembl // 11 // --- /// GENEFINDER00000019066 // cdna:GeneFinder chromosome:SGD1:IX:408465:410372:1 // ensembl // 11 // --- /// YIR028W // cdna:known chromosome:SGD1:IX:408465:410372:1 gene:YIR028W // ensembl // 11 // --- --- No cerevisiae_gene -2.70126213918008 -1.94821942655423 1.82027517354132 -1.73642593743722 1.1047055486401 Max fold change below threshold 4 2.70126213918008 Max fold change at or above threshold 0.677730824877204 -0.959063359101116 -0.748519991451042 1.02985252567495 357.020999908447 132.956832759578 0.372406196816637 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779968_at YMR253C.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 2.70099426103471 1203.86633300781 562.612487792969 --- --- 5737 // cytoplasm // inferred from direct assay --- 524.156799316406 991.988159179688 1415.74450683594 601.068176269531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR253C /GEN=HOR7 /DB_XREF=GI:6323909 /SEG=NC_001145:-775945,777189 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ymr253cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004866 // span:69-91,106-128,145-167,172-191,198-220,240-262,274-296,306-328,335-354,358-380 // numtm:10 S0004866 // YMR253C SGDID:S0004866, Chr XIII from 777189-775945, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018927 // cdna:Genscan chromosome:SGD1:XIII:775945:777189:-1 // ensembl // 11 // --- /// YMR253C // cdna:known chromosome:SGD1:XIII:775945:777189:-1 gene:YMR253C // ensembl // 11 // --- --- No cerevisiae_gene 1.29349034704525 1.89254085890599 1.13846492430819 2.70099426103471 1.14673352907647 Max fold change below threshold 4 2.70099426103471 Max fold change at or above threshold -0.87611628553989 0.265333232233137 1.29924527871681 -0.68846222541006 883.239410400391 409.857249557582 0.464038679356241 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770831_at SPAC869.07c.S1 --- 2.70097752263795 --- --- --- --- 1.22479462623596 2.02977252006531 3.13281798362732 1.21482038497925 0.919434010982513 0.919434010982513 0.725830018520355 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC869.07c /DEF=alpha-galactosidase (predicted) --- --- --- --- --- --- SPAC869.07c // |mel1||alpha-galactosidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.70097752263795 1.65723499808552 -1.87127594927533 2.55783126127447 -1.00821046582692 Max fold change below threshold 1 2.70097752263795 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777594_at SPBC1734.06.S1 --- 2.70090644389178 --- --- --- --- 5.04546976089478 1.86806535720825 5.15468788146973 2.3348183631897 0.398925989866257 0.696289002895355 0.366210997104645 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1734.06 /GEN=rhp18 /DEF=zinc finger protein --- --- --- --- --- --- SPBC1734.06 // |rhp18||RAD18 homolog Rhp18|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.68918818172022 -2.70090644389178 -2.33105506668416 1.02164676942897 -2.16096885326957 Max fold change below threshold 2 2.70090644389178 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779315_at SPAC1565.03.S1 --- 2.70073617160614 --- --- --- --- 18.0246315002441 15.6988897323608 18.2782688140869 10.9766330718994 0.0561522990465164 0.171387001872063 0.194580003619194 0.0461426004767418 M A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1565.03 /DEF=sequence orphan --- --- --- --- --- --- SPAC1565.03 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.53668351933137 -1.14814689494182 -2.70073617160614 1.01407170592305 -1.64209110226959 Max fold change below threshold 4 2.70073617160614 Max fold change at or above threshold MAAAAP No 4 0 MAAP 2 1 1 No No x = 1
1769610_at YOR394C-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /// --- /// Identified by fungal homology and RT-PCR 2.70009527559616 29.8586797714233 18.0817899703979 --- --- --- --- 17.6610069274902 19.1019039154053 40.6154556274414 18.5025730133057 0.111571997404099 0.018554700538516 0.014160200022161 0.00805663969367743 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR394C-A /GEN=ERR1 /DB_XREF=GI:33438890 /SEG=NC_001147:-1084198,1084365 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Yor394c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028718 // YOR394C-A SGDID:S0028718, Chr XV from 1084365-1084198, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YOR394C-A // cdna:known chromosome:SGD1:XV:1084198:1084365:-1 gene:YOR394C-A // ensembl // 11 // --- YAL069W // ensembl // 1 // Cross Hyb Matching Probes No cerevisiae_gene 2.70009527559616 1.08158634407601 -1.74286615617378 2.299724800188 1.04765108180245 Max fold change below threshold 4 2.70009527559616 Max fold change at or above threshold -0.567757449184664 -0.438093406970174 1.49787710360012 -0.492026247445287 23.9702348709106 11.1125410199036 0.463597502475428 APPPPP Called_P_>2EXP 4 0 APPP 1 3 0 Yes Yes 2 < x = 3
1776189_at SPAC1565.04c.S1 --- 2.69956022500992 --- --- --- --- 0.0919150412082672 0.178229749202728 0.237029567360878 0.269956022500992 0.976073980331421 0.753906011581421 0.904784977436066 0.84521484375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1565.04c /GEN=ste4 /DEF=involved in conjugation --- --- --- --- --- --- SPAC1565.04c // |ste4||SAM domain |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.3832688331604 1.78229749202728 1.78325638175011 2.37029567360878 2.69956022500992 Max fold change below threshold 0 2.69956022500992 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774956_at SPBC16D10.02.S1 --- 2.69817051842209 --- --- --- --- 3.90562105178833 8.26459312438965 3.22059202194214 5.45463752746582 0.5 0.334473013877869 0.466064006090164 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16D10.02 /DEF=DNA methyltransferase (predicted) --- --- --- --- --- --- SPBC16D10.02 // |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.23352273386151 2.11607655089974 2.69817051842209 -1.21270282767238 1.39661207657825 Max fold change below threshold 4 2.69817051842209 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777978_at YOR078W.S1 Component of small ribosomal subunit (SSU) processosome that contains U3 snoRNA; originally isolated as bud-site selection mutant that displays a random budding pattern 2.6969591229657 405.351287841797 478.056427001953 BUD21 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction 30515 // snoRNA binding // inferred from physical interaction 446.907409667969 410.757873535156 399.944702148438 509.205444335938 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR078W /GEN=BUD21 /DB_XREF=GI:6324652 /SEG=NC_001147:+472726,473370 /DEF=Component of small ribosomal subunit (SSU) processosome that contains U3 snoRNA; originally isolated as bud-site selection mutant that displays a random budding pattern /NOTE=Bud21p; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: snoRNA binding [goid GO:0030515] [evidence IPI] [pmid 12068309]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP,IPI] [pmid 12068309] --- --- --- --- --- --- S0005604 // BUD21 SGDID:S0005604, Chr XV from 472726-473370, Verified ORF // sgd // 10 // --- /// GENSCAN00000017519 // cdna:Genscan chromosome:SGD1:XV:472726:473370:1 // ensembl // 10 // --- /// GENEFINDER00000022538 // cdna:GeneFinder chromosome:SGD1:XV:472726:473370:1 // ensembl // 10 // --- /// YOR078W // cdna:known chromosome:SGD1:XV:472726:473370:1 gene:YOR078W // ensembl // 10 // --- --- No cerevisiae_gene 2.6969591229657 -1.08800692198958 -1.11902340133778 -1.11742300189815 1.13939807960278 Max fold change below threshold 4 2.6969591229657 Max fold change at or above threshold 0.105595426396997 -0.627985308737073 -0.847416456784358 1.36980633912443 441.703857421875 49.2781972064816 0.111563882403263 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778851_at YBR160W.S1 Catalytic subunit of the main cell cycle cyclin-dependent kinase (CDK); alternately associates with G1 cyclins (CLNs) and G2/M cyclins (CLBs) which direct the CDK to specific substrates 2.69673567023794 779.684814453125 1728.3505859375 CDC28 74 // regulation of cell cycle // traceable author statement /// 82 // G1/S transition of mitotic cell cycle // traceable author statement /// 84 // S phase of mitotic cell cycle // traceable author statement /// 86 // G2/M transition of mitotic cell cycle // traceable author statement /// 6350 // transcription // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // traceable author statement /// 40020 // regulation of meiosis // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4693 // cyclin-dependent protein kinase activity // traceable author statement 1683.19396972656 624.159790039063 935.209838867188 1773.50720214844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR160W /GEN=CDC28 /DB_XREF=GI:6319636 /SEG=NC_001134:+560034,560930 /DEF=Catalytic subunit of the main cell cycle cyclin-dependent kinase (CDK); alternately associates with G1 cyclins (CLNs) and G2/M cyclins (CLBs) which direct the CDK to specific substrates /NOTE=Cdc28p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 3312233]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 3312233]; go_function: cyclin-dependent protein kinase activity [goid GO:0004693] [evidence TAS]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence TAS]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence TAS]; go_process: S phase of mitotic cell cycle [goid GO:0000084] [evidence TAS]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS]; go_process: regulation of cell cycle [goid GO:0000074] [evidence TAS]; go_process: regulation of meiosis [goid GO:0040020] [evidence TAS] [pmid 10619027] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-89 /// hanks // 3.1.3 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk3 // 1.0E-108 --- --- S0000364 // CDC28 SGDID:S0000364, Chr II from 560072-560968, Verified ORF // sgd // 11 // --- /// GENSCAN00000021268 // cdna:Genscan chromosome:SGD1:II:560072:560968:1 // ensembl // 11 // --- /// GENEFINDER00000022200 // cdna:GeneFinder chromosome:SGD1:II:560072:560968:1 // ensembl // 11 // --- /// YBR160W // cdna:known chromosome:SGD1:II:560072:560968:1 gene:YBR160W // ensembl // 11 // --- --- No cerevisiae_gene -1.17411745291558 -2.69673567023794 -1.45000358590967 -1.79980353047333 1.0536558673844 Max fold change below threshold 4 2.69673567023794 Max fold change at or above threshold 0.76169628001851 -1.11786336096879 -0.565815911209434 0.92198299215971 1254.01770019531 563.44803143954 0.449314257168605 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773810_at YGL007C-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 2.69543345983109 58.5501232147217 25.5678224563599 --- --- --- --- 25.3136539459229 68.2312698364258 48.8689765930176 25.8219909667969 0.111571997404099 0.030273400247097 0.0239257998764515 0.0375977009534836 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL007C-A /GEN=PMA1 /DB_XREF=GI:33438793 /SEG=NC_001139:-482944,483030 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ygl007c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028632 // YGL007C-A SGDID:S0028632, Chr VII from 483032-482946, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// M25502 // Saccharomyces cerevisiae H+-ATPase (PMA1) gene mRNA. // gb // 10 // --- /// YGL007C-A // cdna:known chromosome:SGD1:VII:482946:483032:-1 gene:YGL007C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.24241222546263 2.69543345983109 1.10151567495966 1.93053822642182 1.02008153473062 Max fold change below threshold 4 2.69543345983109 Max fold change at or above threshold -0.812136527985829 1.26933852713256 0.330280530554522 -0.787482529701254 42.0589728355408 20.6188470935396 0.490236582195278 AMPAPP No 4 0 APPP 1 3 0 No No 2 < x = 3
1779347_at SPBC1271.03c.S1 --- 2.69442524828001 --- --- --- --- 7.73136138916016 8.35170936584473 7.46967792510986 2.86939167976379 0.111571997404099 0.0676269978284836 0.149657994508743 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1271.03c /DEF=phosphoprotein phosphatase activity --- --- --- --- --- --- SPBC1271.03c // |||phosphoprotein phosphatase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.10093992527556 1.08023787085601 1.12985930538355 -1.03503276401927 -2.69442524828001 Max fold change below threshold 4 2.69442524828001 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1770499_at SPAC26F1.04c.S1 --- 2.69390901300216 --- --- --- --- 3.05779623985291 3.26898956298828 8.23742485046387 4.59039449691772 0.5 0.633789002895355 0.303710997104645 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26F1.04c /DEF=zinc binding dehydrogenase (predicted) --- --- --- --- --- --- SPAC26F1.04c // |etr1||enoyl-[acyl-carrier protein] reductase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.22282238885605 1.06906716686444 1.69846117763703 2.69390901300216 1.50121006661273 Max fold change below threshold 4 2.69390901300216 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779676_at SPCP31B10.08c.S1 --- 2.69228001886608 --- --- --- --- 5.41517496109009 2.01137137413025 5.80928802490234 3.90091586112976 0.633789002895355 0.780517995357513 0.696289002895355 0.6572265625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP31B10.08c /GEN=rpl35a /DEF=60S ribosomal protein L35a --- --- --- --- --- --- SPCP31B10.08c // |rpl35a|rpl33|60S ribosomal protein L35a|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- AB017603 // gb // 8 // Cross Hyb Matching Probes No No 1.01857685217513 -2.69228001886608 1.42278063249547 1.07277937770138 -1.3881804052861 Max fold change below threshold 3 2.69228001886608 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770806_at YPL245W.S1 Hypothetical protein 2.69162521559549 454.328140258789 542.602508544922 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 501.299926757813 430.426940917969 478.229339599609 583.905090332031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL245W /GEN=RBD2 /DB_XREF=GI:6325011 /SEG=NC_001148:+85586,86950 /DEF=Hypothetical ORF /NOTE=Ypl245wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006166 // YPL245W SGDID:S0006166, Chr XVI from 85586-86950, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016998 // cdna:Genscan chromosome:SGD1:XVI:85586:86950:1 // ensembl // 11 // --- /// GENEFINDER00000020829 // cdna:GeneFinder chromosome:SGD1:XVI:85586:86950:1 // ensembl // 11 // --- /// YPL245W // cdna:known chromosome:SGD1:XVI:85586:86950:1 gene:YPL245W // ensembl // 11 // --- --- No cerevisiae_gene 2.69162521559549 -1.16465741128725 -1.0035953019563 -1.04824168081682 1.16478191829884 Max fold change below threshold 4 2.69162521559549 Max fold change at or above threshold 0.0441852412264976 -1.06056935308003 -0.31543467395486 1.3318187858084 498.465324401855 64.1526961780428 0.128700419141541 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777511_at YOR215C.S1 Hypothetical protein 2.69136084877072 2912.05212402344 3204.08361816406 --- --- 5739 // mitochondrion // inferred from direct assay --- 3265.95751953125 2723.08666992188 3101.017578125 3142.20971679688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR215C /GEN=SAS5 /DB_XREF=GI:6324789 /SEG=NC_001147:-746725,747282 /DEF=Hypothetical ORF /NOTE=Yor215cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14576278]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005741 // YOR215C SGDID:S0005741, Chr XV from 747282-746725, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022800 // cdna:GeneFinder chromosome:SGD1:XV:746725:747282:-1 // ensembl // 11 // --- /// YOR215C // cdna:known chromosome:SGD1:XV:746725:747282:-1 gene:YOR215C // ensembl // 11 // --- --- No cerevisiae_gene -2.69136084877072 -1.19935863797716 1.27338947693873 -1.05318897337756 -1.03938241361577 Max fold change below threshold 4 2.69136084877072 Max fold change at or above threshold 0.888182027312207 -1.43116448848949 0.183497149329922 0.359485311847359 3058.06787109375 234.06198509399 0.0765391727588687 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774665_at YLR324W.S1 Peroxisomal integral membrane protein, involved in negative regulation of peroxisome number; partially functionally redundant with Pex31p; genetic interactions suggest action at a step downstream of steps mediated by Pex28p and Pex29p 2.69131454008889 591.437652587891 801.723175048828 PEX30 7031 // peroxisome organization and biogenesis // inferred from mutant phenotype 5777 // peroxisome // inferred from direct assay /// 5779 // integral to peroxisomal membrane // inferred from direct assay --- 783.582946777344 473.0185546875 709.856750488281 819.863403320313 0.00415039015933871 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR324W /GEN=PEX30 /DB_XREF=GI:6323356 /SEG=NC_001144:+779215,780786 /DEF=Peroxisomal integral membrane protein, involved in negative regulation of peroxisome number; partially functionally redundant with Pex31p; genetic interactions suggest action at a step downstream of steps mediated by Pex28p and Pex29p /NOTE=Pex30p; go_component: integral to peroxisomal membrane [goid GO:0005779] [evidence IDA] [pmid 14617799]; go_component: peroxisome [goid GO:0005777] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence IMP] [pmid 14617799] --- --- --- --- --- S0004316 // span:184-203 // numtm:1 S0004316 // PEX30 SGDID:S0004316, Chr XII from 779215-780786, Verified ORF // sgd // 11 // --- /// GENSCAN00000018069 // cdna:Genscan chromosome:SGD1:XII:779215:780786:1 // ensembl // 11 // --- /// GENEFINDER00000024797 // cdna:GeneFinder chromosome:SGD1:XII:779215:780786:1 // ensembl // 11 // --- /// YLR324W // cdna:known chromosome:SGD1:XII:779215:780786:1 gene:YLR324W // ensembl // 11 // --- --- No cerevisiae_gene -2.69131454008889 -1.65655858319346 1.32491778651921 -1.10386066799865 1.0463007224598 Max fold change below threshold 4 2.69131454008889 Max fold change at or above threshold 0.558028503677502 -1.43391100795843 0.085153547078082 0.790728957202848 696.580413818359 155.910553646674 0.22382276411138 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777290_at YLR157W-C.S1 Note: YLR156W, YLR159W, and YLR161W are identical. /// Note: YLR156W, YLR159W, and YLR161W are identical. /// Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /// YLR156W, YLR159W, and YLR161W are three identical open reading frames encoded near the ribosomal DNA region of chromosome 12. 2.69050306380358 1.23791766166687 1.21440541744232 --- --- --- --- 1.04583287239075 0.738044500350952 1.73779082298279 1.3829779624939 0.601073980331421 0.828612983226776 0.533936023712158 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR157W-C /GEN=ASP3-2 /DB_XREF=GI:33438837 /SEG=NC_001144:+481874,482038 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ylr157w-cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028678 // YLR157W-C SGDID:S0028678, Chr XII from 481874-482038, Uncharacterized ORF // sgd // 11 // --- /// YLR157W-C // cdna:known chromosome:SGD1:XII:481874:482038:1 gene:YLR157W-C // ensembl // 11 // --- AY169693 // gb // 1 // Negative Strand Matching Probes No cerevisiae_gene 1.0477250754068 -1.41703226823509 2.69050306380358 1.66163339177726 1.32236994935189 Max fold change below threshold 0 2.69050306380358 Max fold change at or above threshold -0.418452454591375 -1.13267500057022 1.18723513492631 0.363892320235286 1.2261615395546 0.430941831467908 0.351456001159886 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775895_at SPAC22H10.10.S1 --- 2.69046360263304 --- --- --- --- 4.30355930328369 1.59956049919128 6.20857763290405 3.75998783111572 0.24609400331974 0.398925989866257 0.149657994508743 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22H10.10 /GEN=alp21 /DEF=LRR domain --- --- --- --- --- --- SPAC22H10.10 // |alp21|sto1|tubulin specific chaperone |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.41038299573484 -2.69046360263304 1.07688456943644 1.44266110801977 -1.14456734877428 Max fold change below threshold 3 2.69046360263304 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772066_at YHL042W.S1 Hypothetical protein 2.68849043744311 107.589179992676 82.0334167480469 --- --- --- --- 88.6008071899414 109.17032623291 106.008033752441 75.4660263061523 0.0461426004767418 0.0676269978284836 0.018554700538516 0.0107421996071935 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL042W /GEN=ECM34 /DB_XREF=GI:6321745 /SEG=NC_001140:+15665,16117 /DEF=Hypothetical ORF /NOTE=Yhl042wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001034 // span:21-43 // numtm:1 S0001034 // YHL042W SGDID:S0001034, Chr VIII from 15665-16117, Uncharacterized ORF // sgd // 11 // --- /// YHL042W // cdna:known chromosome:SGD1:VIII:15665:16117:1 gene:YHL042W // ensembl // 11 // --- --- No cerevisiae_gene -2.68849043744311 1.23215949939228 -1.07142138834087 1.19646803584061 -1.17404892673829 Max fold change below threshold 4 2.68849043744311 Max fold change at or above threshold -0.394271653570694 0.911579695481026 0.710822259534666 -1.228130301445 94.8112983703613 15.7518074763302 0.166138506138782 PPAPPP Called_P_>2EXP 4 0 PAPP 1 3 0 Yes Yes 2 < x = 3
1780101_at YJL106W.S1 Serine/threonine protein kinase involved in activation of meiosis, associates with Ime1p and mediates its stability, activates Ndt80p; IME2 expression is positively regulated by Ime1p 2.6878186206736 808.938720703125 338.870864868164 IME2 6468 // protein amino acid phosphorylation // traceable author statement /// 40020 // regulation of meiosis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 4672 // protein kinase activity // inferred from direct assay 305.377471923828 820.799255371094 797.078186035156 372.3642578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL106W /GEN=IME2 /DB_XREF=GI:6322355 /SEG=NC_001142:+221307,223244 /DEF=Serine/threonine protein kinase involved in activation of meiosis, associates with Ime1p and mediates its stabiilty, activates Ndt80p; IME2 expression is positively regulated by Ime1p /NOTE=Ime2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 7764269]; go_function: protein kinase activity [goid GO:0004672] [evidence IDA] [pmid 7764269]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 9743499]; go_process: regulation of meiosis [goid GO:0040020] [evidence IMP] [pmid 9003314] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-57 /// hanks // 3.1.2 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk2 // 4.0E-58 --- --- S0003642 // IME2 SGDID:S0003642, Chr X from 221307-223244, Verified ORF // sgd // 11 // --- /// GENSCAN00000024055 // cdna:Genscan chromosome:SGD1:X:221307:223244:1 // ensembl // 11 // --- /// GENEFINDER00000024520 // cdna:GeneFinder chromosome:SGD1:X:221604:223244:1 // ensembl // 11 // --- /// YJL106W // cdna:known chromosome:SGD1:X:221307:223244:1 gene:YJL106W // ensembl // 11 // --- --- No cerevisiae_gene 2.59024430753715 2.6878186206736 -1.17478438747164 2.61014075797306 1.21935732674276 Max fold change below threshold 4 2.6878186206736 Max fold change at or above threshold -0.983832748188583 0.904574092715814 0.817664631288026 -0.738405975815256 573.904792785645 272.940010744941 0.475584128545316 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778181_at YPL166W.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 2.68695226598105 74.0571098327637 160.82780456543 --- --- 5737 // cytoplasm // inferred from direct assay --- 154.394058227539 57.4606628417969 90.6535568237305 167.26155090332 0.00415039015933871 0.00415039015933871 0.00415039015933871 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL166W /GEN=REV3 /DB_XREF=GI:6325091 /SEG=NC_001148:+237337,237978 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ypl166wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006087 // YPL166W SGDID:S0006087, Chr XVI from 237337-237978, Uncharacterized ORF // sgd // 11 // --- /// YPL166W // cdna:known chromosome:SGD1:XVI:237337:237978:1 gene:YPL166W // ensembl // 11 // --- --- No cerevisiae_gene -2.30913481918466 -2.68695226598105 1.514303935743 -1.70312190317858 1.08334189037779 Max fold change below threshold 4 2.68695226598105 Max fold change at or above threshold 0.708392048454392 -1.14989946286852 -0.51356486551528 0.955072279929407 117.442457199097 52.1626422954145 0.4441548954224 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776366_at YPL147W.S1 Subunit of a heterodimeric peroxisomal ATP-binding cassette transporter complex (Pxa1p-Pxa2p), required for import of long-chain fatty acids into peroxisomes; similarity to human adrenoleukodystrophy transporter and ALD-related proteins 2.68688381234398 1747.04571533203 818.296356201172 PXA1 15908 // fatty acid transport // inferred from mutant phenotype 5779 // integral to peroxisomal membrane // inferred from direct assay 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from mutant phenotype /// 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from sequence similarity 783.328674316406 2104.71313476563 1389.37829589844 853.264038085938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL147W /GEN=PXA1 /DB_XREF=GI:6325110 /SEG=NC_001148:+273254,275866 /DEF=Pxa1p and Pxa2p appear to be subunits of a peroxisomal ATP-binding cassette transporter necessary for transport of long-chain fatty acids into peroxisomes /NOTE=Pxa1p; go_component: integral to peroxisomal membrane [goid GO:0005779] [evidence IDA] [pmid 8670886]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence IMP,ISS] [pmid 8670886]; go_process: fatty acid transport [goid GO:0015908] [evidence IMP] [pmid 8670886] --- --- --- --- --- S0006068 // span:61-83,354-373,453-475 // numtm:3 S0006068 // PXA1 SGDID:S0006068, Chr XVI from 273254-275866, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020964 // cdna:GeneFinder chromosome:SGD1:XVI:273254:275866:1 // ensembl // 11 // --- /// GENSCAN00000017076 // cdna:Genscan chromosome:SGD1:XVI:273908:275866:1 // ensembl // 11 // --- /// YPL147W // cdna:known chromosome:SGD1:XVI:273254:275866:1 gene:YPL147W // ensembl // 11 // --- --- No cerevisiae_gene -1.68924538292748 2.68688381234398 1.28704991726311 1.7736849696086 1.08927971879819 Max fold change below threshold 4 2.68688381234398 Max fold change at or above threshold -0.81692252297556 1.34485827230059 0.174572739860372 -0.702508489185403 1282.6710357666 611.248126237712 0.47654317373152 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773376_at YMR133W.S1 Protein involved in early stages of meiotic recombination; possibly involved in the coordination of recombination and meiotic division; mutations lead to premature initiation of the first meiotic division 2.68627479237014 41.5585594177246 15.7329344749451 REC114 7131 // meiotic recombination // inferred from mutant phenotype /// 42138 // meiotic DNA double-strand break formation // traceable author statement 5634 // nucleus // inferred from curator --- 18.529670715332 49.7757873535156 33.3413314819336 12.9361982345581 0.00415039015933871 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR133W /GEN=REC114 /DB_XREF=GI:6323781 /SEG=NC_001145:+536206,537608 /DEF=meiosis-specific recombination gene; dispensable for mitotic recombination and axial elements in meiosis but required for synaptonemal complexes, meiotic recombination, and spore viability; classified as an early recombination gene /NOTE=Rec114p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 9334324]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiotic DNA double-strand break formation [goid GO:0042138] [evidence TAS] [pmid 9334324]; go_process: meiotic recombination [goid GO:0007131] [evidence IMP] [pmid 8417989] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 6.0 --- S0004740 // REC114 SGDID:S0004740, Chr XIII from 536206-537447,537564-537608, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000018825 // cdna:Genscan chromosome:SGD1:XIII:536287:537513:1 // ensembl // 11 // --- /// YMR133W // cdna:known chromosome:SGD1:XIII:536206:537608:1 gene:YMR133W // ensembl // 11 // --- --- No cerevisiae_gene 1.24658976885365 2.68627479237014 1.11603205967256 1.79934829896065 -1.43238920580479 Max fold change below threshold 4 2.68627479237014 Max fold change at or above threshold -0.612757249691547 1.27990192542191 0.28442386158674 -0.951568537317107 28.6457469463348 16.5091090086573 0.576319725213856 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772857_at YBL072C.S1 Protein component of the small (40S) ribosomal subunit; identical to Rps8Bp and has similarity to rat S8 ribosomal protein /// Protein component of the small (40S) ribosomal subunit; identical to Rps8Ap and has similarity to rat S8 ribosomal protein 2.6851520763106 1769.04046630859 3609.54956054688 RPS8B /// RPS8A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3905.91064453125 1454.63293457031 2083.44799804688 3313.1884765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL072C /GEN=RPS8A /DB_XREF=GI:6319399 /SEG=NC_001134:-88521,89123 /DEF=Protein component of the small (40S) ribosomal subunit; identical to Rps8Ap and has similarity to rat S8 ribosomal protein /NOTE=Rps8ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0000168 // RPS8A SGDID:S0000168, Chr II from 89123-88521, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021083 // cdna:Genscan chromosome:SGD1:II:88521:89123:-1 // ensembl // 11 // --- /// GENEFINDER00000022250 // cdna:GeneFinder chromosome:SGD1:II:88521:89123:-1 // ensembl // 11 // --- /// YBL072C // cdna:known chromosome:SGD1:II:88521:89123:-1 gene:YBL072C // ensembl // 11 // --- --- No cerevisiae_gene 1.03504635715228 -2.6851520763106 -1.27892939832255 -1.87473392577729 -1.17889781162818 Max fold change below threshold 4 2.6851520763106 Max fold change at or above threshold 1.08660506068185 -1.1027230201716 -0.541104697392981 0.557222656882733 2689.29501342773 1119.64841240485 0.41633528743199 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776736_at YLR419W.S1 Hypothetical protein 2.68451875734184 152.79411315918 349.267425537109 --- --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4386 // helicase activity // inferred from sequence similarity 369.246551513672 137.546646118164 168.041580200195 329.288299560547 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR419W /GEN=CDC73 /DB_XREF=GI:6323451 /SEG=NC_001144:+958424,962731 /DEF=Hypothetical ORF /NOTE=Ylr419wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: helicase activity [goid GO:0004386] [evidence ISS] [pmid 10077188]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004411 // YLR419W SGDID:S0004411, Chr XII from 958424-962731, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000024742 // cdna:GeneFinder chromosome:SGD1:XII:958424:962731:1 // ensembl // 11 // --- /// GENSCAN00000018135 // cdna:Genscan chromosome:SGD1:XII:958757:962731:1 // ensembl // 11 // --- /// YLR419W // cdna:known chromosome:SGD1:XII:958424:962731:1 gene:YLR419W // ensembl // 11 // --- --- No cerevisiae_gene -2.38718428477473 -2.68451875734184 -1.17413789037789 -2.19735229265145 -1.12134731785627 Max fold change below threshold 4 2.68451875734184 Max fold change at or above threshold 1.02550989452245 -0.984463234194855 -0.719922780618664 0.678876120291073 251.030769348145 115.275125863683 0.459207156807987 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779088_at YHR134W.S1 Sumoylated protein of unknown function, identified based on genetic interactions with SMT3; UV-sensitive mutant phenotype and genetic interactions suggest a role in the DNA damage response, processing stalled or collapsed replication forks 2.68449293723535 64.7288570404053 158.323585510254 WSS1 10224 // response to UV-B // inferred from mutant phenotype /// 10225 // response to UV-C // inferred from mutant phenotype /// 16925 // protein sumoylation // inferred from genetic interaction --- --- 150.012130737305 55.8809928894043 73.5767211914063 166.635040283203 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR134W /GEN=WSS1 /DB_XREF=GI:6321926 /SEG=NC_001140:+371750,372559 /DEF=weak suppressor of smt3 /NOTE=Wss1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein sumoylation [goid GO:0016925] [evidence IGI] [pmid 11606525] --- --- --- --- --- --- S0001176 // WSS1 SGDID:S0001176, Chr VIII from 371751-372560, Verified ORF // sgd // 11 // --- /// GENSCAN00000016665 // cdna:Genscan chromosome:SGD1:VIII:371751:372560:1 // ensembl // 11 // --- /// GENEFINDER00000020111 // cdna:GeneFinder chromosome:SGD1:VIII:371796:372560:1 // ensembl // 11 // --- /// YHR134W // cdna:known chromosome:SGD1:VIII:371751:372560:1 gene:YHR134W // ensembl // 11 // --- --- No cerevisiae_gene -1.25300579690085 -2.68449293723535 1.44726861790454 -2.03885316317719 1.11081043555743 Max fold change below threshold 4 2.68449293723535 Max fold change at or above threshold 0.700527635263319 -1.01286472893134 -0.690763812648943 1.00310090631697 111.52622127533 54.9384599902454 0.492605768957387 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770973_at SPCC1259.07.S1 --- 2.68425663231792 --- --- --- --- 2.83974838256836 7.62261343002319 2.60605621337891 3.92768406867981 0.5 0.219482004642487 0.466064006090164 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1259.07 /DEF=sequence orphan --- --- --- --- --- --- SPCC1259.07 // |||histone deacetylase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No 2.36417651657727 2.68425663231792 1.03582699285218 -1.08967272769855 1.38310988846395 Max fold change below threshold 4 2.68425663231792 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773165_at YDR367W.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 2.68385500003312 409.648300170898 987.259674072266 --- --- 5737 // cytoplasm // inferred from direct assay /// 5794 // Golgi apparatus // inferred from direct assay --- 1026.27697753906 382.389129638672 436.907470703125 948.242370605469 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR367W /GEN=ESF1 /DB_XREF=GI:6320575 /SEG=NC_001136:+1212836,1213602 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ydr367wp; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 14690591]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002775 // span:12-31,51-73,80-102,153-175 // numtm:4 S0002775 // YDR367W SGDID:S0002775, Chr IV from 1212838-1212867,1212969-1213604, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YDR367W // cdna:known chromosome:SGD1:IV:1212838:1213604:1 gene:YDR367W // ensembl // 11 // --- --- No cerevisiae_gene -1.40574674570618 -2.68385500003312 1.04714662718334 -2.34895726522472 -1.08229394651893 Max fold change below threshold 4 2.68385500003312 Max fold change at or above threshold 0.976416797365066 -0.941395341156809 -0.779013124119443 0.743991667911185 698.453987121582 335.740834551531 0.480691413811183 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769563_at SPBC2G2.12.S1 --- 2.68334390636352 --- --- --- --- 6.38668060302734 13.9887561798096 12.3402433395386 2.38012003898621 0.303710997104645 0.0561522990465164 0.0239257998764515 0.171387001872063 A M P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G2.12 /DEF=histidine-tRNA ligase (predicted) --- --- --- --- --- --- SPBC2G2.12 // |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.09525378830866 2.19030151173973 1.07038862641334 1.93218419810898 -2.68334390636352 Max fold change below threshold 3 2.68334390636352 Max fold change at or above threshold AAMMPA No 4 0 AMPA 2 1 1 No No x = 1
1774196_at YGR098C.S1 Separase with cysteine protease activity (related to caspases) that promotes sister chromatid separation by mediating dissociation of the cohesin Scc1p from chromatin; inhibited by Pds1p 2.68312572241491 179.357856750488 439.061477661133 ESP1 70 // mitotic sister chromatid segregation // inferred from mutant phenotype /// 70 // mitotic sister chromatid segregation // inferred from physical interaction /// 7096 // regulation of exit from mitosis // inferred from genetic interaction /// 7096 // regulation of exit from mitosis // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5819 // spindle // inferred from direct assay 4197 // cysteine-type endopeptidase activity // inferred from direct assay 414.100799560547 154.335220336914 204.380493164063 464.022155761719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR098C /GEN=ESP1 /DB_XREF=GI:6321535 /SEG=NC_001139:-682568,687460 /DEF=Separase with cysteine protease activity (related to caspases) that promotes sister chromatid separation by mediating dissociation of the cohesin Scc1p from chromatin; inhibited by Pds1p /NOTE=Esp1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11149918]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11149918]; go_component: spindle [goid GO:0005819] [evidence IDA] [pmid 11149918]; go_function: cysteine-type endopeptidase activity [goid GO:0004197] [evidence IDA] [pmid 11081625]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence IMP,IPI]; go_process: regulation of exit from mitosis [goid GO:0007096] [evidence IGI,IPI] [pmid 12598903] --- --- --- --- --- --- S0003330 // ESP1 SGDID:S0003330, Chr VII from 687462-682570, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019416 // cdna:Genscan chromosome:SGD1:VII:682570:687459:-1 // ensembl // 11 // --- /// YGR098C // cdna:known chromosome:SGD1:VII:682570:687462:-1 gene:YGR098C // ensembl // 11 // --- --- No cerevisiae_gene -2.42936354073485 -2.68312572241491 1.48463802913277 -2.02612682428619 1.120553633932 Max fold change below threshold 4 2.68312572241491 Max fold change at or above threshold 0.686946978519515 -1.01429483063127 -0.686541204695303 1.01388905680706 309.209667205811 152.691744246105 0.493812970422018 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776341_at YLR289W.S1 Mitochondrial GTPase of unknown function, similar to E. coli elongation factor-type GTP-binding protein LepA and to LK1236.1 from Caenorhabditis elegans 2.68251875086021 184.020301818848 468.875549316406 GUF1 --- 5739 // mitochondrion // inferred from direct assay 3924 // GTPase activity // inferred from sequence similarity 459.481414794922 171.287307739258 196.753295898438 478.269683837891 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR289W /GEN=GUF1 /DB_XREF=GI:6323320 /SEG=NC_001144:+715091,717028 /DEF=Mitochondrial GTPase of unknown function, similar to E. coli elongation factor-type GTP-binding protein LepA and to LK1236.1 from Caenorhabditis elegans /NOTE=Guf1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: GTPase activity [goid GO:0003924] [evidence ISS] [pmid 8553703]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.DNA-binding protein Mj223 // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; DNA-binding protein Mj223 // 0.889999985694885 --- S0004280 // GUF1 SGDID:S0004280, Chr XII from 715091-717028, Verified ORF // sgd // 11 // --- /// GENSCAN00000018045 // cdna:Genscan chromosome:SGD1:XII:715091:717028:1 // ensembl // 11 // --- /// GENEFINDER00000024628 // cdna:GeneFinder chromosome:SGD1:XII:715091:717028:1 // ensembl // 11 // --- /// YLR289W // cdna:known chromosome:SGD1:XII:715091:717028:1 gene:YLR289W // ensembl // 11 // --- --- No cerevisiae_gene -1.23993096180194 -2.68251875086021 1.36596134226187 -2.33531749847841 1.04089016103373 Max fold change below threshold 4 2.68251875086021 Max fold change at or above threshold 0.806420230618611 -0.940550097113497 -0.786180786321617 0.920310652816504 326.447925567627 164.967946209936 0.505342302062694 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773573_at YDR508C.S1 High-affinity glutamine permease, also transports Leu, Ser, Thr, Cys, Met and Asn; expression is fully dependent on Grr1p and modulated by the Ssy1p-Ptr3p-Ssy5p (SPS) sensor of extracellular amino acids 2.68185268028716 1105.34283447266 2710.76696777344 GNP1 6865 // amino acid transport // inferred from direct assay 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from sequence similarity 5296 // L-proline permease activity // inferred from genetic interaction /// 15171 // amino acid transporter activity // inferred from direct assay /// 15359 // amino acid permease activity // inferred from direct assay 2806.7470703125 1046.57019042969 1164.11547851563 2614.78686523438 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR508C /GEN=GNP1 /DB_XREF=GI:6320717 /SEG=NC_001136:-1466441,1468432 /DEF=high-affinity glutamine permease /NOTE=Gnp1p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 10654085]; go_function: amino acid permease activity [goid GO:0015359] [evidence IDA] [pmid 12073087]; go_function: amino acid transporter activity [goid GO:0015171] [evidence IDA] [pmid 10654085]; go_process: amino acid transport [goid GO:0006865] [evidence IDA] [pmid 10654085] --- --- --- --- --- S0002916 // span:184-206,226-248,260-282,297-316,382-404,432-454,482-501,511-533,554-576,591-608 // numtm:10 S0002916 // GNP1 SGDID:S0002916, Chr IV from 1468434-1466443, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023916 // cdna:GeneFinder chromosome:SGD1:IV:1466443:1468434:-1 // ensembl // 11 // --- /// GENSCAN00000025496 // cdna:Genscan chromosome:SGD1:IV:1466443:1468434:-1 // ensembl // 11 // --- /// YDR508C // cdna:known chromosome:SGD1:IV:1466443:1468434:-1 gene:YDR508C // ensembl // 11 // --- --- No cerevisiae_gene 1.29065573017586 -2.68185268028716 -1.45809776697295 -2.41105553711167 -1.07341332772869 Max fold change below threshold 4 2.68185268028716 Max fold change at or above threshold 0.964845788678854 -0.924899452360181 -0.798701539351716 0.758755203033044 1908.05490112305 931.436069612758 0.488159994277173 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772793_at YCR065W.S1 Forkhead transcription factor involved in cell cycle specific transcription of SPC110, encoding a spindle pole body (SPB) calmodulin binding protein; dosage-dependent suppressor of calmodulin mutants with specific defects in SPB assembly 2.68113303343759 46.3010711669922 61.639253616333 HCM1 83 // G1/S-specific transcription in mitotic cell cycle // inferred from physical interaction /// 6367 // transcription initiation from RNA polymerase II promoter // inferred from direct assay /// 7051 // spindle organization and biogenesis // inferred from genetic interaction 5634 // nucleus // inferred from physical interaction 3704 // specific RNA polymerase II transcription factor activity // inferred from direct assay 57.4396324157715 40.6737365722656 51.9284057617188 65.8388748168945 0.00195312988944352 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR065W /GEN=HCM1 /DB_XREF=GI:10383801 /SEG=NC_001135:+229305,230999 /DEF=Forkhead transcription factor involved in cell cycle specific transcription of SPC110, encoding a spindle pole body (SPB) calmodulin binding protein; dosage-dependent suppressor of calmodulin mutants with specific defects in SPB assembly /NOTE=Hcm1p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 9920414]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IDA] [pmid 9920414]; go_process: spindle assembly [goid GO:0007051] [evidence IGI] [pmid 9920414]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence IDA] [pmid 9920414] --- --- --- --- scop // a.4.5.Forkhead DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Forkhead DNA-binding domain // 7.00000016189081E-37 --- S0000661 // HCM1 SGDID:S0000661, Chr III from 229305-230999, Verified ORF // sgd // 11 // --- /// GENSCAN00000022503 // cdna:Genscan chromosome:SGD1:III:229308:230999:1 // ensembl // 11 // --- /// GENEFINDER00000023356 // cdna:GeneFinder chromosome:SGD1:III:229308:230999:1 // ensembl // 11 // --- /// YCR065W // cdna:known chromosome:SGD1:III:229305:230999:1 gene:YCR065W // ensembl // 11 // --- --- No cerevisiae_gene 2.68113303343759 -1.41220446549625 1.05290947241748 -1.10613125077134 1.1462273006959 Max fold change below threshold 4 2.68113303343759 Max fold change at or above threshold 0.328879532311386 -1.2604006590371 -0.193543094733056 1.12506422145877 53.9701623916626 10.549364381922 0.19546660440569 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771655_at YDR227W.S1 Silent information regulator that, together with SIR2 and SIR3, is involved in assembly of silent chromatin domains at telomeres and the silent mating-type loci; potentially phosphorylated by Cdc28p; some alleles of SIR4 prolong lifespan 2.68106066350357 294.139495849609 751.990844726563 SIR4 1308 // loss of chromatin silencing during replicative cell aging // inferred from direct assay /// 6303 // double-strand break repair via nonhomologous end-joining // inferred from direct assay /// 6342 // chromatin silencing // traceable author statement 783 // nuclear telomere cap complex // inferred from direct assay /// 5677 // chromatin silencing complex // inferred from direct assay /// 5724 // nuclear telomeric heterochromatin // inferred from direct assay 30527 // structural constituent of chromatin // traceable author statement /// 42393 // histone binding // traceable author statement 678.729309082031 335.121978759766 253.157012939453 825.252380371094 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR227W /GEN=SIR4 /DB_XREF=GI:6320433 /SEG=NC_001136:+917563,921639 /DEF=Silent information regulator that, together with SIR2 and SIR3, is involved in assembly of silent chromatin domains at telomeres and the silent mating-type loci; potentially phosphorylated by Cdc28p; some alleles of SIR4 prolong lifespan /NOTE=Sir4p; go_component: chromatin silencing complex [goid GO:0005677] [evidence IDA] [pmid 9122169]; go_component: nuclear telomere cap complex [goid GO:0000783] [evidence IDA] [pmid 9710643]; go_component: nuclear telomeric heterochromatin [goid GO:0005724] [evidence IDA] [pmid 9000052]; go_function: histone binding [goid GO:0042393] [evidence TAS] [pmid 12080091]; go_function: structural constituent of chromatin [goid GO:0030527] [evidence TAS] [pmid 11689698]; go_process: chromatin silencing [goid GO:0006342] [evidence TAS] [pmid 10744999]; go_process: double-strand break repair via nonhomologous end-joining [goid GO:0006303] [evidence IDA] [pmid 10908335]; go_process: loss of chromatin silencing during replicative cell aging [goid GO:0001308] [evidence IDA] [pmid 9150138] --- --- --- --- --- --- S0002635 // SIR4 SGDID:S0002635, Chr IV from 917565-921641, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023517 // cdna:GeneFinder chromosome:SGD1:IV:917565:921641:1 // ensembl // 11 // --- /// GENSCAN00000025275 // cdna:Genscan chromosome:SGD1:IV:917565:921641:1 // ensembl // 11 // --- /// YDR227W // cdna:known chromosome:SGD1:IV:917565:921641:1 gene:YDR227W // ensembl // 11 // --- --- No cerevisiae_gene -1.55181805146747 -2.02532018817119 -1.01546561582213 -2.68106066350357 1.21587850904395 Max fold change below threshold 4 2.68106066350357 Max fold change at or above threshold 0.57002689682137 -0.68822964027319 -0.988377352370639 1.10658009582246 523.065170288086 273.082094304623 0.522080440099308 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775682_at SPBC800.03.S1 --- 2.68004277386367 --- --- --- --- 0.381842166185379 1.02335333824158 0.514406204223633 0.155807942152023 0.725830018520355 0.780517995357513 0.828612983226776 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC800.03 /GEN=clr3 /DEF=histone deacetylase --- --- --- --- --- --- SPBC800.03 // |clr3||histone deacetylase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.82357367150403 2.68004277386367 2.57405359782718 1.34716972031291 -2.45072337719994 Max fold change below threshold 0 2.68004277386367 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777881_at YIL023C.S1 Hypothetical protein 2.67964664499921 668.263519287109 325.761260986328 --- --- --- --- 281.906402587891 581.117492675781 755.409545898438 369.616119384766 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL023C /GEN=IRR1 /DB_XREF=GI:6322166 /SEG=NC_001141:-309384,310424 /DEF=Hypothetical ORF /NOTE=Yil023cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001285 // span:69-91,98-120,130-147,289-311,326-343 // numtm:5 S0001285 // YIL023C SGDID:S0001285, Chr IX from 310424-309384, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016457 // cdna:Genscan chromosome:SGD1:IX:309384:310031:-1 // ensembl // 11 // --- /// GENEFINDER00000019085 // cdna:GeneFinder chromosome:SGD1:IX:309384:310031:-1 // ensembl // 11 // --- /// YIL023C // cdna:known chromosome:SGD1:IX:309384:310424:-1 gene:YIL023C // ensembl // 11 // --- --- No cerevisiae_gene 2.03114259482724 2.06138451394202 1.14734437606502 2.67964664499921 1.31113063056285 Max fold change below threshold 4 2.67964664499921 Max fold change at or above threshold -1.00901229549767 0.394517528512509 1.21208112454804 -0.597586357562881 497.012390136719 213.18470400079 0.428932373179162 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769929_at YFL034C-A.S1 Protein component of the large (60S) ribosomal subunit, has similarity to Rpl22Ap and to rat L22 ribosomal protein 2.6795924944604 410.296463012695 650.57763671875 RPL22B 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 607.916870117188 459.104034423828 361.488891601563 693.238403320313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL034C-A /GEN=RPL22B /DB_XREF=GI:14318484 /SEG=NC_001138:-64242,64931 /DEF=Protein component of the large (60S) ribosomal subunit, has similarity to Rpl22Ap and to rat L22 ribosomal protein /NOTE=Rpl22bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0006436 // RPL22B SGDID:S0006436, Chr VI from 64931-64920,64598-64242, reverse complement, intron sequence removed, Verified ORF // sgd // 10 // --- /// YFL034C-A // cdna:known chromosome:SGD1:VI:64242:64931:-1 gene:YFL034C-A // ensembl // 10 // --- --- No cerevisiae_gene 2.6795924944604 -1.32413750377977 -1.31610757818531 -1.68170276940969 1.14035065877786 Max fold change below threshold 4 2.6795924944604 Max fold change at or above threshold 0.521818524246355 -0.480420433696451 -1.13784825950054 1.09645016895063 530.437049865723 148.480394335112 0.279920858417976 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773620_at YGL050W.S1 Hypothetical protein 2.67881645759768 932.745513916016 374.861099243164 --- --- --- --- 362.43115234375 970.886535644531 894.6044921875 387.291046142578 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL050W /GEN=MST27 /DB_XREF=GI:6321388 /SEG=NC_001139:+405777,406598 /DEF=Hypothetical ORF /NOTE=Ygl050wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 9.0 --- S0003018 // YGL050W SGDID:S0003018, Chr VII from 405779-406600, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019306 // cdna:Genscan chromosome:SGD1:VII:405779:406600:1 // ensembl // 11 // --- /// GENEFINDER00000021647 // cdna:GeneFinder chromosome:SGD1:VII:405779:406600:1 // ensembl // 11 // --- /// YGL050W // cdna:known chromosome:SGD1:VII:405779:406600:1 gene:YGL050W // ensembl // 11 // --- --- No cerevisiae_gene 1.5536078040145 2.67881645759768 -1.23532345662113 2.46834326023666 1.0685920446906 Max fold change below threshold 4 2.67881645759768 Max fold change at or above threshold -0.899975017812869 0.979390036341302 0.743774064049468 -0.823189082577901 653.80330657959 323.755824849379 0.495188417665133 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777928_at YJL157C.S1 Cyclin-dependent kinase inhibitor that mediates cell cycle arrest in response to pheromone; also forms a complex with Cdc24p, Ste4p, and Ste18p that may specify the direction of polarized growth during mating; potential Cdc28p substrate 2.67856595833113 18.9705114364624 35.666051864624 FAR1 750 // signal transduction during conjugation with cellular fusion // inferred from genetic interaction /// 750 // signal transduction during conjugation with cellular fusion // inferred from physical interaction /// 750 // signal transduction during conjugation with cellular fusion // traceable author statement /// 7050 // cell cycle arrest // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4861 // cyclin-dependent protein kinase inhibitor activity // inferred from direct assay 40.7604713439941 22.7237491607666 15.2172737121582 30.5716323852539 0.00122069998178631 0.000732421991415322 0.00805663969367743 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL157C /GEN=FAR1 /DB_XREF=GI:6322304 /SEG=NC_001142:-123753,126245 /DEF=Cyclin-dependent kinase inhibitor that mediates cell cycle arrest in response to pheromone; also forms a complex with Cdc24p, Ste4p, and Ste18p that may specify the direction of polarized growth during mating; potential Cdc28p substrate /NOTE=Far1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9822386]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9822386]; go_function: cyclin-dependent protein kinase inhibitor activity [goid GO:0004861] [evidence IDA] [pmid 8066461]; go_process: cell cycle arrest [goid GO:0007050] [evidence IMP] [pmid 8500168]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence IGI,IPI,TAS] [pmid 10087263] --- --- --- --- scop // a.4.5.Plant O-methyltransferase, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Plant O-methyltransferase, N-terminal domain // 0.159999996423721 --- S0003693 // FAR1 SGDID:S0003693, Chr X from 126245-123753, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024019 // cdna:Genscan chromosome:SGD1:X:123753:126095:-1 // ensembl // 11 // --- /// GENEFINDER00000024333 // cdna:GeneFinder chromosome:SGD1:X:123753:126245:-1 // ensembl // 11 // --- /// YJL157C // cdna:known chromosome:SGD1:X:123753:126245:-1 gene:YJL157C // ensembl // 11 // --- --- No cerevisiae_gene -1.49320615851239 -1.79373883489123 -1.10826418207909 -2.67856595833113 -1.33327755712694 Max fold change below threshold 4 2.67856595833113 Max fold change at or above threshold 1.22911295346341 -0.420110080803595 -1.10647937175585 0.297476499096037 27.3182816505432 10.9364966462792 0.400336184617299 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1771673_at SPCC18B5.07c.S1 --- 2.67849468990914 --- --- --- --- 9.09987545013428 6.00231122970581 13.951774597168 3.39738416671753 0.171387001872063 0.194580003619194 0.00805663969367743 0.366210997104645 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18B5.07c /GEN=nup61 /DEF=nucleoporin --- --- --- --- --- --- SPCC18B5.07c // |nup61||nucleoporin|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.21953955242532 -1.51606191380054 -1.04041247472953 1.53318302801189 -2.67849468990914 Max fold change below threshold 4 2.67849468990914 Max fold change at or above threshold AMAAPA No 4 0 AAPA 3 1 0 No No x = 1
1776133_at SPBC582.08.S1 --- 2.67841157230078 --- --- --- --- 5.33296823501587 8.19839668273926 4.80388355255127 2.76023292541504 0.5 0.0952147990465164 0.219482004642487 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC582.08 /DEF=alanine aminotransferase (predicted) --- --- --- --- --- --- SPBC582.08 // |||alanine aminotransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.14279914772704 1.53730461563772 -2.67841157230078 -1.11013686669895 -1.93207181390824 Max fold change below threshold 4 2.67841157230078 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777833_at SPAC644.17c.S1 --- 2.67807042641759 --- --- --- --- 0.64814555644989 0.58397388458252 0.595854997634888 1.24125409126282 0.780517995357513 0.994140625 0.943848013877869 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC644.17c /GEN=mrpl9 /DEF=mitochondrial ribosomal protein subunit YmL9 --- --- --- --- --- --- SPAC644.17c // |mrpl9||mitochondrial ribosomal protein subunit L9|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.67807042641759 -1.10988791376047 -1.45376044849405 -1.08775718760866 1.91508539850459 Max fold change below threshold 0 2.67807042641759 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774983_at YOL083W.S1 Hypothetical protein 2.67795511878658 1626.32751464844 907.161224365234 --- --- --- --- 859.633972167969 1541.68286132813 1710.97216796875 954.6884765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL083W /GEN=PHM7 /DB_XREF=GI:6324489 /SEG=NC_001147:+165713,166951 /DEF=Hypothetical ORF /NOTE=Yol083wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005443 // YOL083W SGDID:S0005443, Chr XV from 165713-166951, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017400 // cdna:Genscan chromosome:SGD1:XV:165713:166951:1 // ensembl // 11 // --- /// GENEFINDER00000022629 // cdna:GeneFinder chromosome:SGD1:XV:165713:166951:1 // ensembl // 11 // --- /// YOL083W // cdna:known chromosome:SGD1:XV:165713:166951:1 gene:YOL083W // ensembl // 11 // --- YOL083C-A // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene -2.67795511878658 1.79341779320337 1.78713942950288 1.99034964108472 1.11057555595995 Max fold change below threshold 4 2.67795511878658 Max fold change at or above threshold -0.963099768246675 0.650421113010208 1.05090828567388 -0.73822963043741 1266.74436950684 422.70843661401 0.333696716393203 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770877_at SPAC4D7.12c.S1 --- 2.67687613934638 --- --- --- --- 3.55845069885254 3.06617569923401 9.52553176879883 5.5475287437439 0.366210997104645 0.633789002895355 0.129638999700546 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4D7.12c /GEN=fet5 /DEF=ATP binding --- --- --- --- --- --- U80218 // Schizosaccharomyces pombe ATP(GTP)-binding protein Fet5 (fet5+) mRNA, complete cds. // gb // 11 // --- /// SPAC4D7.12c // |fet5||factor of eukaryotic transcription Fet5|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.23722888100648 -1.16055016016907 1.1796411229741 2.67687613934638 1.55897305125873 Max fold change below threshold 4 2.67687613934638 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773531_at YKR055W.S1 Non-essential small GTPase of the Rho/Rac subfamily of Ras-like proteins, likely to be involved in the establishment of cell polarity 2.67686780833018 165.057197570801 371.56770324707 RHO4 7015 // actin filament organization // traceable author statement /// 7264 // small GTPase mediated signal transduction // inferred from sequence similarity /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from genetic interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction 5622 // intracellular // traceable author statement 3924 // GTPase activity // inferred from sequence similarity /// 4871 // signal transducer activity // inferred from sequence similarity 347.804107666016 129.929504394531 200.18489074707 395.331298828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR055W /GEN=RHO4 /DB_XREF=GI:6322908 /SEG=NC_001143:+547858,548733 /DEF=ras homolog--GTP binding protein /NOTE=Rho4p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 9891811]; go_function: GTPase activity [goid GO:0003924] [evidence ISS] [pmid 9891811]; go_function: signal transducer activity [goid GO:0004871] [evidence ISS] [pmid 9891811]; go_process: actin filament organization [goid GO:0007015] [evidence TAS] [pmid 9891811]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IGI,IMP,IPI] [pmid 10639324]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence ISS] [pmid 9891811] --- --- --- --- --- --- S0001763 // RHO4 SGDID:S0001763, Chr XI from 547858-548733, Verified ORF // sgd // 11 // --- /// GENSCAN00000018464 // cdna:Genscan chromosome:SGD1:XI:547858:548733:1 // ensembl // 11 // --- /// GENEFINDER00000022960 // cdna:GeneFinder chromosome:SGD1:XI:548041:548733:1 // ensembl // 11 // --- /// YKR055W // cdna:known chromosome:SGD1:XI:547858:548733:1 gene:YKR055W // ensembl // 11 // --- --- No cerevisiae_gene -1.36662969149807 -2.67686780833018 1.39051588400123 -1.73741437911745 1.13664930952382 Max fold change below threshold 4 2.67686780833018 Max fold change at or above threshold 0.640257801372638 -1.11459194360625 -0.548726785515646 1.02306092774926 268.312450408936 124.1557027289 0.462728071469191 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769839_at SPCC18B5.06.S1 --- 2.67675352825386 --- --- --- --- 11.7176265716553 8.53890037536621 7.00239038467407 4.37755155563354 0.018554700538516 0.0561522990465164 0.000244141003349796 0.018554700538516 P M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18B5.06 /GEN=erf1 /DEF=translation release factor eRF1 --- --- --- --- --- --- SPCC18B5.06 // |erf1|sup45|translation release factor eRF1|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -1.35041480217626 -1.37226411558324 -2.52477021011563 -1.67337522302403 -2.67675352825386 Max fold change below threshold 4 2.67675352825386 Max fold change at or above threshold PAMAPP No 3 0 PMPP 0 3 1 No No 2 < x = 3
1769900_at YBR128C.S1 Subunit of an autophagy-specific phosphatidylinositol 3-kinase complex (with Vps34p, Vps15p, and Vps30p) required for organization of a pre-autophagosomal structure; ATG14 transcription is activated by Gln3p during nitrogen starvation 2.67632001847942 231.347694396973 370.332305908203 ATG14 6914 // autophagy // inferred from mutant phenotype 5624 // membrane fraction // inferred from direct assay --- 337.316864013672 284.204132080078 178.491256713867 403.347747802734 0.000244141003349796 0.00415039015933871 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR128C /GEN=ATG14 /DB_XREF=GI:6319604 /SEG=NC_001134:-493037,494071 /DEF=Required for autophagy /NOTE=Atg14p; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 9712845]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: autophagy [goid GO:0006914] [evidence IMP] [pmid 8224160] --- --- --- --- --- --- S0000332 // ATG14 SGDID:S0000332, Chr II from 494109-493075, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021243 // cdna:Genscan chromosome:SGD1:II:493075:493947:-1 // ensembl // 11 // --- /// YBR128C // cdna:known chromosome:SGD1:II:493075:494109:-1 gene:YBR128C // ensembl // 11 // --- --- No cerevisiae_gene -2.67632001847942 -1.18688233540049 1.30993823598037 -1.88982289790481 1.19575328373261 Max fold change below threshold 4 2.67632001847942 Max fold change at or above threshold 0.383900585312246 -0.175084116730424 -1.28765878550358 1.07884231692175 300.840000152588 95.0164320052169 0.31583709598798 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779877_at YMR160W.S1 Hypothetical protein 2.67525878620151 706.381622314453 1076.37823486328 --- --- 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay --- 1063.42712402344 577.159851074219 835.603393554688 1089.32934570313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR160W /GEN=ATG16 /DB_XREF=GI:6323812 /SEG=NC_001145:+575065,577515 /DEF=Hypothetical ORF /NOTE=Ymr160wp; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004770 // YMR160W SGDID:S0004770, Chr XIII from 575065-577515, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018846 // cdna:Genscan chromosome:SGD1:XIII:575065:577515:1 // ensembl // 11 // --- /// YMR160W // cdna:known chromosome:SGD1:XIII:575065:577515:1 gene:YMR160W // ensembl // 11 // --- GENEFINDER00000021993 // ensembl // 1 // Cross Hyb Matching Probes No cerevisiae_gene -2.67525878620151 -1.84251749674578 1.30428813552512 -1.27264576978269 1.02435730770312 Max fold change below threshold 4 2.67525878620151 Max fold change at or above threshold 0.721408376699478 -1.31755124210922 -0.233875707739924 0.83001857314967 891.379928588867 238.487936918206 0.267549144051015 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771288_at YGR053C.S1 Hypothetical protein 2.67512834448831 211.470733642578 507.499053955078 --- --- --- --- 478.561096191406 244.048706054688 178.892761230469 536.43701171875 0.000244141003349796 0.000732421991415322 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR053C /GEN=SCM4 /DB_XREF=GI:6321490 /SEG=NC_001139:-594988,595839 /DEF=Hypothetical ORF /NOTE=Ygr053cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003285 // YGR053C SGDID:S0003285, Chr VII from 595841-594990, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019382 // cdna:Genscan chromosome:SGD1:VII:594990:595694:-1 // ensembl // 11 // --- /// YGR053C // cdna:known chromosome:SGD1:VII:594990:595841:-1 gene:YGR053C // ensembl // 11 // --- --- No cerevisiae_gene -1.63012911724421 -1.96092453808859 1.22470135172104 -2.67512834448831 1.12093735990649 Max fold change below threshold 4 2.67512834448831 Max fold change at or above threshold 0.68208846760738 -0.661237852927583 -1.03446203767394 1.01361142299414 359.484893798828 174.575891614576 0.485627893205078 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772670_at YIL017C.S1 Protein involved in proteasome-dependent catabolite degradation of fructose-1,6-bisphosphatase (FBPase); localized to the nucleus and the cytoplasm 2.67503432149136 458.785919189453 760.531433105469 VID28 45721 // negative regulation of gluconeogenesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 741.5146484375 432.089202880859 485.482635498047 779.548217773438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL017C /GEN=VID28 /DB_XREF=GI:6322172 /SEG=NC_001141:-318198,320963 /DEF=Vacuole import and degradation /NOTE=Vid28p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: negative regulation of gluconeogenesis [goid GO:0045721] [evidence IMP] [pmid 12686616] --- --- --- --- --- --- S0001279 // VID28 SGDID:S0001279, Chr IX from 320963-318198, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016462 // cdna:Genscan chromosome:SGD1:IX:318198:320963:-1 // ensembl // 11 // --- /// GENEFINDER00000019150 // cdna:GeneFinder chromosome:SGD1:IX:318198:320390:-1 // ensembl // 11 // --- /// YIL017C // cdna:known chromosome:SGD1:IX:318198:320963:-1 gene:YIL017C // ensembl // 11 // --- --- No cerevisiae_gene -2.67503432149136 -1.71611473624801 1.17534144441474 -1.52737625245194 1.05129173026599 Max fold change below threshold 4 2.67503432149136 Max fold change at or above threshold 0.748091405286348 -1.00744922270012 -0.704518931823405 0.963876749237178 609.658676147461 176.256499350595 0.289106849859647 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772733_at YMR164C.S1 Transcription factor involved in regulation of invasive growth and starch degradation; controls the activation of MUC1 and STA2 in response to nutritional signals 2.67500795974525 286.797943115234 750.707977294922 MSS11 5983 // starch catabolism // inferred from mutant phenotype /// 7124 // pseudohyphal growth // inferred from genetic interaction /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from curator 3704 // specific RNA polymerase II transcription factor activity // inferred from direct assay 711.763061523438 266.078857421875 307.517028808594 789.652893066406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR164C /GEN=MSS11 /DB_XREF=GI:6323816 /SEG=NC_001145:-587273,589549 /DEF=Multicopy Suppressor of STA10 - 11 /NOTE=Mss11p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 12492858]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IDA] [pmid 12492858]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IDA] [pmid 12492858]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IGI] [pmid 9832522]; go_process: starch catabolism [goid GO:0005983] [evidence IMP] [pmid 9342405] --- --- --- --- --- --- S0004774 // MSS11 SGDID:S0004774, Chr XIII from 589549-587273, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022045 // cdna:GeneFinder chromosome:SGD1:XIII:587273:589411:-1 // ensembl // 11 // --- /// YMR164C // cdna:known chromosome:SGD1:XIII:587273:589549:-1 gene:YMR164C // ensembl // 11 // --- GENSCAN00000018850 // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene -2.11129695697094 -2.67500795974525 1.47237711428161 -2.3145484472226 1.10943224754633 Max fold change below threshold 4 2.67500795974525 Max fold change at or above threshold 0.714192069842798 -0.934965782773994 -0.781632805945148 1.00240651887634 518.752960205078 270.24957216459 0.520960057862133 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773292_at YGR034W.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl26Ap and has similarity to E. coli L24 and rat L26 ribosomal proteins; binds to 5.8S rRNA 2.67262878937889 612.098205566406 1613.37005615234 RPL26B 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3723 // RNA binding // inferred from direct assay /// 3735 // structural constituent of ribosome // traceable author statement 1547.10461425781 578.869995117188 645.326416015625 1679.63549804688 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR034W /GEN=RPL26B /DB_XREF=GI:6321471 /SEG=NC_001139:+555931,556674 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl26Ap and has similarity to E. coli L24 and rat L26 ribosomal proteins; binds to 5.8S rRNA /NOTE=Rpl26bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 6337137]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- scop // a.4.5.Biotin repressor-like // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Biotin repressor-like // 9.60000038146973 --- S0003266 // RPL26B SGDID:S0003266, Chr VII from 555933-555957,556312-556676, intron sequence removed, Verified ORF // sgd // 11 // --- /// YGR034W // cdna:known chromosome:SGD1:VII:555933:556676:1 gene:YGR034W // ensembl // 11 // --- GENEFINDER00000021663 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 1.39289330553127 -2.67262878937889 -1.95832577489333 -2.39739855034906 1.08566381521177 Max fold change below threshold 4 2.67262878937889 Max fold change at or above threshold 0.747311033692324 -0.918484506615968 -0.804149811936568 0.975323284860212 1112.73413085938 581.244573965801 0.522357100268777 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776529_at YGL093W.S1 Protein required for accurate chromosome segregation, localizes to the nuclear side of the spindle pole body; forms a complex with Ydr532cp 2.67245731718477 336.496780395508 544.715301513672 SPC105 7020 // microtubule nucleation // inferred from physical interaction 5739 // mitochondrion // inferred from direct assay /// 5816 // spindle pole body // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from physical interaction 516.919860839844 281.915222167969 391.078338623047 572.5107421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL093W /GEN=SPC105 /DB_XREF=GI:6321345 /SEG=NC_001139:+334887,337640 /DEF=Spindle Pole Component of molecular weight 105kDa /NOTE=Spc105p; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 9585415]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9585415]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752] --- --- --- --- --- --- S0003061 // SPC105 SGDID:S0003061, Chr VII from 334889-337642, Verified ORF // sgd // 11 // --- /// GENSCAN00000019282 // cdna:Genscan chromosome:SGD1:VII:334889:337642:1 // ensembl // 11 // --- /// GENEFINDER00000021387 // cdna:GeneFinder chromosome:SGD1:VII:335099:337642:1 // ensembl // 11 // --- /// YGL093W // cdna:known chromosome:SGD1:VII:334889:337642:1 gene:YGL093W // ensembl // 11 // --- --- No cerevisiae_gene -2.67245731718477 -1.83360038831765 -1.01353226894603 -1.32178085510917 1.10754255264508 Max fold change below threshold 4 2.67245731718477 Max fold change at or above threshold 0.586114403534651 -1.21879594992621 -0.380388503080335 1.0130700494719 440.60604095459 130.202942335203 0.295508754380927 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776158_at YNR048W.S1 Protein with similarity to Cdc50p 2.67227791873368 182.559722900391 485.272125244141 --- --- --- 30528 // transcription regulator activity // inferred from sequence similarity /// 30528 // transcription regulator activity // inferred from genetic interaction 463.073028564453 173.287750244141 191.831695556641 507.471221923828 0.00292969006113708 0.00195312988944352 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR048W /GEN=PET494 /DB_XREF=GI:6324376 /SEG=NC_001146:+711629,712810 /DEF=Hypothetical ORF /NOTE=Ynr048wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: transcription regulator activity [goid GO:0030528] [evidence ISS,IGI] [pmid 11180453]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005331 // span:46-68,337-359 // numtm:2 S0005331 // YNR048W SGDID:S0005331, Chr XIV from 711630-712811, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020075 // cdna:Genscan chromosome:SGD1:XIV:711630:712811:1 // ensembl // 11 // --- /// GENEFINDER00000020640 // cdna:GeneFinder chromosome:SGD1:XIV:711630:712811:1 // ensembl // 11 // --- /// YNR048W // cdna:known chromosome:SGD1:XIV:711630:712811:1 gene:YNR048W // ensembl // 11 // --- --- No cerevisiae_gene -1.00180740220199 -2.67227791873368 1.331699922835 -2.4139547284965 1.09587730362317 Max fold change below threshold 4 2.67227791873368 Max fold change at or above threshold 0.734383432282234 -0.913326991038739 -0.807886672752017 0.986830231508523 333.915924072266 175.871484587837 0.526693912776004 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772043_at YDL235C.S1 Phosphorelay intermediate protein, phosphorylated by the plasma membrane sensor Sln1p in response to osmotic stress and then in turn phosphorylates the response regulators Ssk1p in the cytosol and Skn7p in the nucleus 2.67133974279979 250.059478759766 703.936981201172 YPD1 6970 // response to osmotic stress // traceable author statement /// 7234 // osmosensory signaling pathway via two-component system // inferred from direct assay /// 7234 // osmosensory signaling pathway via two-component system // inferred from mutant phenotype 5737 // cytoplasm // traceable author statement 16772 // transferase activity, transferring phosphorus-containing groups // inferred from direct assay 663.52294921875 251.733123779297 248.385833740234 744.351013183594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL235C /GEN=YPD1 /DB_XREF=GI:6319966 /SEG=NC_001136:-33415,33918 /DEF=Phosphorelay intermediate protein, phosphorylated by the plasma membrane sensor Sln1p in response to osmotic stress and then in turn phosphorylates the response regulators Ssk1p in the cytosol and Skn7p in the nucleus /NOTE=Ypd1p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 8808622]; go_function: transferase activity, transferring phosphorus-containing groups [goid GO:0016772] [evidence IDA] [pmid 8808622]; go_process: osmosensory signaling pathway via two-component system [goid GO:0007234] [evidence IDA,IMP] [pmid 8808622]; go_process: response to osmotic stress [goid GO:0006970] [evidence TAS] [pmid 8808622] --- --- --- --- --- --- S0002394 // YPD1 SGDID:S0002394, Chr IV from 33918-33415, reverse complement, Verified ORF // sgd // 10 // --- /// YDL235C // cdna:known chromosome:SGD1:IV:33415:33918:-1 gene:YDL235C // ensembl // 10 // --- --- No cerevisiae_gene -1.78329912700664 -2.63581899456539 -1.17007086514763 -2.67133974279979 1.12181653107856 Max fold change below threshold 4 2.67133974279979 Max fold change at or above threshold 0.706213955288049 -0.852891575381405 -0.865564978390058 1.01224259848341 476.998229980469 264.119276943773 0.553711230657161 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773681_at YBR105C.S1 Peripheral membrane protein located at Vid (vacuole import and degradation) vesicles; regulates fructose-1,6-bisphosphatase (FBPase) targeting to the vacuole; involved in proteasome-dependent catabolite degradation of FBPase 2.67132063041294 2178.95239257813 1414.76062011719 VID24 16192 // vesicle-mediated transport // inferred from mutant phenotype /// 45721 // negative regulation of gluconeogenesis // inferred from mutant phenotype 16023 // cytoplasmic membrane-bound vesicle // inferred from direct assay /// 19898 // extrinsic to membrane // inferred from direct assay --- 1312.58520507813 2048.62036132813 2309.28442382813 1516.93603515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR105C /GEN=VID24 /DB_XREF=GI:6319581 /SEG=NC_001134:-450838,451926 /DEF=also involved in vacuolar protein targeting /NOTE=Vid24p; go_component: cytoplasmic vesicle [goid GO:0016023] [evidence IDA] [pmid 9508768]; go_component: extrinsic to membrane [goid GO:0019898] [evidence IDA] [pmid 9508768]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: negative regulation of gluconeogenesis [goid GO:0045721] [evidence IMP] [pmid 12686616]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IMP] [pmid 9508768] --- --- --- --- --- --- S0000309 // VID24 SGDID:S0000309, Chr II from 451963-450875, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000021223 // cdna:Genscan chromosome:SGD1:II:450875:451963:-1 // ensembl // 10 // --- /// GENEFINDER00000022322 // cdna:GeneFinder chromosome:SGD1:II:450875:451963:-1 // ensembl // 10 // --- /// YBR105C // cdna:known chromosome:SGD1:II:450875:451963:-1 gene:YBR105C // ensembl // 10 // --- --- No cerevisiae_gene 2.67132063041294 1.56075228747241 1.11047831902282 1.7593405859627 1.15568576370321 Max fold change below threshold 4 2.67132063041294 Max fold change at or above threshold -1.04942830821192 0.545578719425321 1.11044441640944 -0.606594827622843 1796.85650634766 461.462014584552 0.256816286083152 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779398_at YAL024C.S1 Putative GDP/GTP exchange factor required for mitotic exit at low temperatures; acts as a guanine nucleotide exchange factor (GEF) for Tem1p, which is a key regulator of mitotic exit; physically associates with Ras2p-GTP 2.67045201933156 54.3081207275391 123.272693634033 LTE1 7096 // regulation of exit from mitosis // traceable author statement 5933 // bud // traceable author statement 5085 // guanyl-nucleotide exchange factor activity // inferred from sequence similarity 115.846992492676 43.3810424804688 65.2351989746094 130.698394775391 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL024C /GEN=LTE1 /DB_XREF=GI:6319295 /SEG=NC_001133:-101568,105875 /DEF=Gdp/GTP exchange factor required for growth at low temperatures /NOTE=Lte1p; go_component: bud [goid GO:0005933] [evidence TAS] [pmid 11148127]; go_function: guanyl-nucleotide exchange factor activity [goid GO:0005085] [evidence ISS] [pmid 7985422]; go_process: regulation of exit from mitosis [goid GO:0007096] [evidence TAS] [pmid 10219244] --- --- --- --- --- --- S0000022 // LTE1 SGDID:S0000022, Chr I from 105873-101566, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018227 // cdna:GeneFinder chromosome:SGD1:I:101566:104037:-1 // ensembl // 11 // --- /// GENSCAN00000020358 // cdna:Genscan chromosome:SGD1:I:101566:105873:-1 // ensembl // 11 // --- /// YAL024C // cdna:known chromosome:SGD1:I:101566:105873:-1 gene:YAL024C // ensembl // 11 // --- --- No cerevisiae_gene -1.6572886092451 -2.67045201933156 1.45707094638626 -1.77583565795155 1.12819842762559 Max fold change below threshold 4 2.67045201933156 Max fold change at or above threshold 0.655884522614121 -1.10077820779514 -0.571006884693443 1.01590056987446 88.7904071807861 41.2520563895177 0.464600374064334 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771012_at YDL060W.S1 Protein required for processing of 20S pre-rRNA in the cytoplasm, associates with pre-40S ribosomal particles 2.67029763906064 365.502349853516 873.264190673828 TSR1 6364 // rRNA processing // inferred from mutant phenotype /// 42254 // ribosome biogenesis and assembly // inferred from mutant phenotype 5730 // nucleolus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 43021 // ribonucleoprotein binding // inferred from direct assay 858.007507324219 321.315307617188 409.689392089844 888.520874023438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL060W /GEN=TSR1 /DB_XREF=GI:6320143 /SEG=NC_001136:+341619,343985 /DEF=Twenty S rRNA accumulation /NOTE=Tsr1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11565749]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 12089522]; go_process: ribosome biogenesis and assembly [goid GO:0042254] [evidence IMP] [pmid 11565749] --- --- --- --- --- --- S0002218 // TSR1 SGDID:S0002218, Chr IV from 341619-343985, Verified ORF // sgd // 11 // --- /// GENSCAN00000025054 // cdna:Genscan chromosome:SGD1:IV:341619:343985:1 // ensembl // 11 // --- /// GENEFINDER00000023850 // cdna:GeneFinder chromosome:SGD1:IV:342042:343985:1 // ensembl // 11 // --- /// YDL060W // cdna:known chromosome:SGD1:IV:341619:343985:1 gene:YDL060W // ensembl // 11 // --- --- No cerevisiae_gene 1.2655561637677 -2.67029763906064 -1.29987613926219 -2.09428782851195 1.03556305328187 Max fold change below threshold 4 2.67029763906064 Max fold change at or above threshold 0.807169898464579 -1.00824413357416 -0.709310120544319 0.910384355653903 619.383270263672 295.630743310008 0.477298560524823 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772706_at YNL023C.S1 Protein that binds to Fpr1p (FKBP12), conferring rapamycin resistance by competing with rapamycin for Fpr1p binding; has similarity to putative transcription factors, including D. melanogaster shuttle craft and human NFX1 2.67022977142942 187.629974365234 417.229904174805 FAP1 --- --- 3700 // transcription factor activity // inferred from sequence similarity 410.550720214844 153.751083374023 221.508865356445 423.909088134766 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL023C /GEN=FAP1 /DB_XREF=GI:6324305 /SEG=NC_001146:-588261,591158 /DEF=Protein that binds to Fpr1p (FKBP12), conferring rapamycin resistance by competing with rapamycin for Fpr1p binding; has similarity to putative transcription factors, including D. melanogaster shuttle craft and human NFX1 /NOTE=Fap1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: transcription factor activity [goid GO:0003700] [evidence ISS] [pmid 10998178]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004968 // FAP1 SGDID:S0004968, Chr XIV from 591159-588262, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020018 // cdna:Genscan chromosome:SGD1:XIV:588262:590454:-1 // ensembl // 11 // --- /// GENEFINDER00000020582 // cdna:GeneFinder chromosome:SGD1:XIV:588262:591159:-1 // ensembl // 11 // --- /// YNL023C // cdna:known chromosome:SGD1:XIV:588262:591159:-1 gene:YNL023C // ensembl // 11 // --- --- No cerevisiae_gene -1.01841669058858 -2.67022977142942 1.095870296172 -1.85342794092777 1.03253767990696 Max fold change below threshold 4 2.67022977142942 Max fold change at or above threshold 0.797793361961771 -1.09706018825768 -0.59709424078256 0.896361067078471 302.42993927002 135.524793887675 0.448119634632714 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774435_at YJL161W.S1 The authentic, non-tagged protein was localized to the mitochondria 2.67013253332969 902.830444335938 365.087692260742 --- --- 5739 // mitochondrion // inferred from direct assay --- 357.4609375 954.468078613281 851.192810058594 372.714447021484 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL161W /GEN=JJJ2 /DB_XREF=GI:6322300 /SEG=NC_001142:+117240,117782 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Yjl161wp --- --- --- --- --- --- S0003697 // FMP33 SGDID:S0003697, Chr X from 117240-117782, Uncharacterized ORF // sgd // 11 // --- /// YJL161W // cdna:known chromosome:SGD1:X:117240:117782:1 gene:YJL161W // ensembl // 11 // --- --- No cerevisiae_gene 1.98452611053437 2.67013253332969 -1.03294151925284 2.38121909490766 1.04267182206863 Max fold change below threshold 4 2.67013253332969 Max fold change at or above threshold -0.882316293886925 1.02275672288249 0.693201322496055 -0.833641751491625 633.95906829834 313.377563934884 0.494318292151015 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778315_at YDL166C.S1 Essential nuclear protein, involved in the oxidative stress response 2.66897935812512 307.191902160645 724.449371337891 FAP7 6979 // response to oxidative stress // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 664.231201171875 248.870864868164 365.512939453125 784.667541503906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL166C /GEN=FAP7 /DB_XREF=GI:6320035 /SEG=NC_001136:-163450,164043 /DEF=Essential nuclear protein, involved in the oxidative stress response /NOTE=Fap7p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10692169]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP] [pmid 12837249]; go_process: response to oxidative stress [goid GO:0006979] [evidence IMP] [pmid 10692169] --- --- --- --- --- --- S0002325 // FAP7 SGDID:S0002325, Chr IV from 164043-163450, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023915 // cdna:GeneFinder chromosome:SGD1:IV:163450:164043:-1 // ensembl // 11 // --- /// GENSCAN00000024978 // cdna:Genscan chromosome:SGD1:IV:163450:164043:-1 // ensembl // 11 // --- /// YDL166C // cdna:known chromosome:SGD1:IV:163450:164043:-1 gene:YDL166C // ensembl // 11 // --- --- No cerevisiae_gene -1.11581505018303 -2.66897935812512 1.04310504206468 -1.81725769316317 1.18131689706769 Max fold change below threshold 4 2.66897935812512 Max fold change at or above threshold 0.592601869280848 -1.06592771502687 -0.600177101485543 1.07350294723156 515.820636749268 250.438906989462 0.485515485707867 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769807_at SPBC3B9.09.S1 --- 2.66887337120953 --- --- --- --- 2.31031560897827 4.6161642074585 3.79878854751587 6.16593980789185 0.45654296875 0.129638999700546 0.432372987270355 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B9.09 /DEF=zinc finger protein --- --- --- --- --- --- SPBC3B9.09 // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.31850617578257 1.99806649339134 1.3739221804869 1.64427255425758 2.66887337120953 Max fold change below threshold 3 2.66887337120953 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772368_at SPBC24C6.04.S1 --- 2.66850397076457 --- --- --- --- 9.79463386535645 12.3594083786011 19.6425304412842 5.60534572601318 0.0375977009534836 0.303710997104645 0.303710997104645 0.432372987270355 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC24C6.04 /DEF=delta-1-pyrroline-5-carboxylate dehydrogenase (predicted) --- --- --- --- --- --- SPBC24C6.04 // |||delta-1-pyrroline-5-carboxylate dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- D89230 // gb // 8 // Cross Hyb Matching Probes No No -1.67787554640032 1.26185506763211 -2.66850397076457 2.0054379480952 -1.74737372931373 Max fold change below threshold 4 2.66850397076457 Max fold change at or above threshold PPAAAA No 4 0 PAAA 3 1 0 No No x = 1
1772438_at YOL006C.S1 Topoisomerase I, nuclear enzyme that relieves torsional strain in DNA by cleaving and re-sealing the phosphodiester backbone; relaxes both positively and negatively supercoiled DNA; functions in replication, transcription, and recombination 2.66846194966137 106.663074493408 238.343139648438 TOP1 19 // regulation of mitotic recombination // inferred from mutant phenotype /// 6265 // DNA topological change // inferred from direct assay /// 6271 // DNA strand elongation // inferred from mutant phenotype /// 6333 // chromatin assembly or disassembly // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 6368 // RNA elongation from RNA polymerase II promoter // inferred from mutant phenotype /// 7076 // mitotic chromosome condensation // inferred from mutant phenotype /// 7076 // mitotic chromosome condensation // inferred from genetic interaction /// 7097 // nuclear migration // inferred from genetic interaction /// 7097 // nuclear migration // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 3917 // DNA topoisomerase type I activity // inferred from direct assay 239.745544433594 123.482055664063 89.8440933227539 236.940734863281 0.00195312988944352 0.0239257998764515 0.0239257998764515 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL006C /GEN=TOP1 /DB_XREF=GI:6324568 /SEG=NC_001147:-313078,315387 /DEF=topoisomerase I /NOTE=Top1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 6088500]; go_function: DNA topoisomerase type I activity [goid GO:0003917] [evidence IDA] [pmid 6088500]; go_process: DNA strand elongation [goid GO:0006271] [evidence IMP] [pmid 2549254]; go_process: DNA topological change [goid GO:0006265] [evidence IDA] [pmid 6088500]; go_process: RNA elongation from Pol II promoter [goid GO:0006368] [evidence IMP] [pmid 1660829]; go_process: chromatin assembly/disassembly [goid GO:0006333] [evidence IMP] [pmid 9199287]; go_process: mitotic chromosome condensation [goid GO:0007076] [evidence IGI,IMP] [pmid 8895658]; go_process: nuclear migration [goid GO:0007097] [evidence IGI,IMP] [pmid 8895658]; go_process: regulation of mitotic recombination [goid GO:0000019] [evidence IMP] [pmid 2902925]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP] [pmid 1660829] --- --- --- --- scop // a.2.8.Eukaryotic DNA topoisomerase I, dispensable insert domain // All alpha proteins; Long alpha-hairpin; Eukaryotic DNA topoisomerase I, dispensable insert domain; Eukaryotic DNA topoisomerase I, dispensable insert domain // 7.5 --- S0005366 // TOP1 SGDID:S0005366, Chr XV from 315387-313078, reverse complement, Verified ORF // sgd // 9 // --- /// GENEFINDER00000022644 // cdna:GeneFinder chromosome:SGD1:XV:311342:315387:-1 // ensembl // 9 // --- /// GENSCAN00000017464 // cdna:Genscan chromosome:SGD1:XV:313078:314679:-1 // ensembl // 9 // --- /// YOL006C // cdna:known chromosome:SGD1:XV:313078:315387:-1 gene:YOL006C // ensembl // 9 // --- --- No cerevisiae_gene -1.08198924509041 -1.94154157172302 -1.25056682357687 -2.66846194966137 -1.01183759969315 Max fold change below threshold 4 2.66846194966137 Max fold change at or above threshold 0.870290842146855 -0.634459037849876 -1.06982116513608 0.8339893608391 172.503107070923 77.264328321318 0.447901082092113 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1780239_at SPAC6B12.07c.S1 --- 2.66844595416423 --- --- --- --- 10.8515853881836 28.9568691253662 17.6094570159912 14.209774017334 0.0375977009534836 0.00122069998178631 0.000732421991415322 0.00585938012227416 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6B12.07c /DEF=zinc finger protein --- --- --- --- --- --- SPAC6B12.07c // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.014545485671 2.66844595416423 1.99088508435753 1.62275431525115 1.3094652540639 Max fold change below threshold 4 2.66844595416423 Max fold change at or above threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1777497_at YBR288C.S1 Mu3-like subunit of the clathrin associated protein complex (AP-3); functions in transport of alkaline phosphatase to the vacuole via the alternate pathway 2.66778761756066 381.679580688477 924.108825683594 APM3 6896 // Golgi to vacuole transport // inferred from mutant phenotype /// 16192 // vesicle-mediated transport // traceable author statement 30123 // AP-3 adaptor complex // inferred from sequence similarity --- 890.586364746094 429.529602050781 333.829559326172 957.631286621094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR288C /GEN=APM3 /DB_XREF=GI:6319765 /SEG=NC_001134:-777970,779421 /DEF=Mu3-like subunit of the yeast AP-3 complex which functions in transport of alkaline phosphatase to the vacuole via the alternate pathway /NOTE=Apm3p; go_component: AP-3 adaptor complex [goid GO:0030123] [evidence ISS] [pmid 9335339]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi to vacuole transport [goid GO:0006896] [evidence IMP] [pmid 9335339] --- --- --- --- --- --- S0000492 // APM3 SGDID:S0000492, Chr II from 779459-778008, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021368 // cdna:Genscan chromosome:SGD1:II:778008:779045:-1 // ensembl // 11 // --- /// YBR288C // cdna:known chromosome:SGD1:II:778008:779459:-1 gene:YBR288C // ensembl // 11 // --- --- No cerevisiae_gene -1.20068020101733 -2.07339927328409 -1.11893536717656 -2.66778761756066 1.07528177449035 Max fold change below threshold 4 2.66778761756066 Max fold change at or above threshold 0.750328887018965 -0.705100712910563 -1.00719946986549 0.961971295757089 652.894203186035 316.783967233892 0.485199540274718 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772200_at SPAC12B10.06c.S1 --- 2.66692995234694 --- --- --- --- 0.530803740024567 0.255173861980438 0.376442730426788 0.255659997463226 0.953857004642487 0.932372987270355 0.696289002895355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12B10.06c /DEF=conserved protein --- --- --- --- --- --- SPAC12B10.06c // |||conserved protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.66692995234694 -2.0801650133949 -1.36725794082448 -1.41005177446985 -2.07620959591426 Max fold change below threshold 0 2.66692995234694 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771576_at SPAC1952.04c.S1 --- 2.66600968743679 --- --- --- --- 1.49736475944519 0.985731422901154 0.561650156974792 0.618414580821991 0.725830078125 0.916015625 0.953857004642487 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1952.04c /DEF=dubious --- --- --- --- --- --- SPAC1952.04c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.40465959207993 -1.51903928865149 -2.08609124801369 -2.66600968743679 -2.4212960138406 Max fold change below threshold 0 2.66600968743679 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771126_at YDR496C.S1 Pumilio-homology domain protein that binds ASH1 mRNA at PUF consensus sequences in the 3' UTR and represses its translation, resulting in proper asymmetric localization of ASH1 mRNA 2.66548563237339 235.741493225098 524.548599243164 PUF6 7532 // regulation of transcription, mating-type specific // inferred from direct assay /// 7532 // regulation of transcription, mating-type specific // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay 16566 // specific transcriptional repressor activity // inferred from direct assay 538.706176757813 224.083480834961 247.399505615234 510.391021728516 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR496C /GEN=PUF6 /DB_XREF=GI:6320704 /SEG=NC_001136:-1441421,1443391 /DEF=member of the PUF protein family /NOTE=Puf6p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002904 // PUF6 SGDID:S0002904, Chr IV from 1443393-1441423, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023422 // cdna:GeneFinder chromosome:SGD1:IV:1441423:1445457:-1 // ensembl // 10 // --- /// GENSCAN00000025488 // cdna:Genscan chromosome:SGD1:IV:1441423:1443393:-1 // ensembl // 10 // --- /// YDR496C // cdna:known chromosome:SGD1:IV:1441423:1443393:-1 gene:YDR496C // ensembl // 10 // --- --- No cerevisiae_gene 2.66548563237339 -2.40404234506949 -1.10986416108051 -2.17747475047759 -1.05547737680299 Max fold change below threshold 4 2.66548563237339 Max fold change at or above threshold 0.947120489982351 -0.932190038000509 -0.792918296298119 0.777987844316277 380.145046234131 167.413895276024 0.440394783345181 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779343_at YDR333C.S1 Hypothetical protein 2.6654022909722 283.078811645508 693.904510498047 --- --- 5737 // cytoplasm // inferred from direct assay --- 680.004333496094 255.122589111328 311.035034179688 707.8046875 0.000244141003349796 0.00122069998178631 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR333C /GEN=GPI8 /DB_XREF=GI:6320540 /SEG=NC_001136:-1133251,1135422 /DEF=Hypothetical ORF /NOTE=Ydr333cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002741 // YDR333C SGDID:S0002741, Chr IV from 1135424-1133253, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023739 // cdna:GeneFinder chromosome:SGD1:IV:1133253:1135424:-1 // ensembl // 11 // --- /// GENSCAN00000025362 // cdna:Genscan chromosome:SGD1:IV:1133253:1134743:-1 // ensembl // 11 // --- /// YDR333C // cdna:known chromosome:SGD1:IV:1133253:1135424:-1 gene:YDR333C // ensembl // 11 // --- --- No cerevisiae_gene -1.05295982395335 -2.6654022909722 -1.05811839553974 -2.18626282820362 1.04088261299892 Max fold change below threshold 4 2.6654022909722 Max fold change at or above threshold 0.802798729305059 -0.97825586190902 -0.743877430001563 0.919334562605524 488.491661071777 238.556272491984 0.488352804157555 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777099_at YLR191W.S1 Integral peroxisomal membrane receptor for the PTS1 peroxisomal matrix protein signal recognition factor Pex5p, required for the translocation of peroxisomal matrix proteins, also interacts with Pex7p and Pex14p, contains a C-terminal SH3 domain 2.66451596451579 267.107360839844 559.926788330078 PEX13 6625 // protein-peroxisome targeting // inferred from physical interaction /// 6625 // protein-peroxisome targeting // inferred from genetic interaction /// 7031 // peroxisome organization and biogenesis // traceable author statement /// 16558 // peroxisome matrix protein import // inferred from mutant phenotype 5778 // peroxisomal membrane // traceable author statement 5515 // protein binding // inferred from direct assay 548.4736328125 205.843627929688 328.37109375 571.379943847656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR191W /GEN=PEX13 /DB_XREF=GI:6323220 /SEG=NC_001144:+537274,538434 /DEF=Pas20p may be the component of peroxisomal protein import machinery that binds Pex5p, the mobile receptor for type I peroxisomal targeting sequence (PTS1)-containing proteins /NOTE=Pex13p; go_component: peroxisomal membrane [goid GO:0005778] [evidence TAS]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 10087260]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence TAS]; go_process: protein-peroxisome targeting [goid GO:0006625] [evidence IGI,IPI] [pmid 10087260] --- --- --- --- --- --- S0004181 // PEX13 SGDID:S0004181, Chr XII from 537274-538434, Verified ORF // sgd // 11 // --- /// GENSCAN00000017969 // cdna:Genscan chromosome:SGD1:XII:537274:538434:1 // ensembl // 11 // --- /// GENEFINDER00000024729 // cdna:GeneFinder chromosome:SGD1:XII:537274:538434:1 // ensembl // 11 // --- /// YLR191W // cdna:known chromosome:SGD1:XII:537274:538434:1 gene:YLR191W // ensembl // 11 // --- --- No cerevisiae_gene -1.93759653680886 -2.66451596451579 1.05247205935506 -1.67028597599419 1.041763741527 Max fold change below threshold 4 2.66451596451579 Max fold change at or above threshold 0.76440024416845 -1.17627209389074 -0.482270809177505 0.894142658899792 413.517074584961 176.552217581185 0.426952666364229 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776940_s_at YNL302C.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps19Ap and has similarity to rat S19 ribosomal protein /// Protein component of the small (40S) ribosomal subunit; nearly identical to Rps19Bp and has similarity to rat S19 ribosomal protein 2.66415668801922 2240.13177490234 4432.28527832031 RPS19B /// RPS19A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 5024.15234375 1885.83215332031 2594.43139648438 3840.41821289063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL302C /GEN=RPS19B /DB_XREF=GI:6324027 /SEG=NC_001146:-61957,62942 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps19Ap and has similarity to rat S19 ribosomal protein /NOTE=Rps19bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0005246 // RPS19B SGDID:S0005246, Chr XIV from 62942-62923,62371-61957, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0005481 // RPS19A SGDID:S0005481, Chr XV from 92849-92830,92439-92025, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YNL302C // cdna:known chromosome:SGD1:XIV:61957:62942:-1 gene:YNL302C // ensembl // 11 // --- /// YOL121C // cdna:known chromosome:SGD1:XV:92025:92849:-1 gene:YOL121C // ensembl // 11 // --- GENSCAN00000019799 // ensembl // 6 // Cross Hyb Matching Probes /// GENEFINDER00000020409 // ensembl // 6 // Cross Hyb Matching Probes /// GENSCAN00000017371 // ensembl // 6 // Cross Hyb Matching Probes /// GENEFINDER00000022740 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 1.00152369452869 -2.66415668801922 -1.59107836353164 -1.93651385446463 -1.30823052731239 Max fold change below threshold 4 2.66415668801922 Max fold change at or above threshold 1.21846400602643 -1.04697288387358 -0.535461384659953 0.363970262507103 3336.20852661133 1385.30462023517 0.415233223338788 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772300_at SPCC285.10c.S1 --- 2.66397904651082 --- --- --- --- 6.41013860702515 6.96196031570435 6.79881286621094 5.83474826812744 0.296142578125 0.0805663987994194 0.0561522990465164 0.0239257998764515 A A M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC285.10c /DEF=hypothetical protein --- --- --- --- --- --- SPCC285.10c // |||hypothetical protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.66397904651082 1.0860857685783 1.78143373129654 1.06063429872793 -1.09861442387169 Max fold change below threshold 4 2.66397904651082 Max fold change at or above threshold AAAAMP No 4 0 AAMP 2 1 1 No No x = 1
1778717_at YDR197W.S1 Translational activator of COB mRNA; soluble protein; cytochrome b translational activator 2.66261254449404 157.241157531738 400.240280151367 CBS2 6412 // protein biosynthesis // traceable author statement 5743 // mitochondrial inner membrane // traceable author statement --- 404.339385986328 151.858139038086 162.624176025391 396.141174316406 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR197W /GEN=CBS2 /DB_XREF=GI:6320403 /SEG=NC_001136:+851221,852390 /DEF=Translational activator of COB mRNA; soluble protein /NOTE=Cbs2p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence TAS] [pmid 9162108]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 9162108]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9162108] --- --- --- --- --- --- S0002605 // CBS2 SGDID:S0002605, Chr IV from 851223-852392, Verified ORF // sgd // 11 // --- /// GENSCAN00000025247 // cdna:Genscan chromosome:SGD1:IV:851268:852392:1 // ensembl // 11 // --- /// YDR197W // cdna:known chromosome:SGD1:IV:851223:852392:1 gene:YDR197W // ensembl // 11 // --- --- No cerevisiae_gene -2.26116529244094 -2.66261254449404 1.01344174785969 -2.48634241149482 -1.02069517687493 Max fold change below threshold 4 2.66261254449404 Max fold change at or above threshold 0.894549774729787 -0.903694169377552 -0.827015362343519 0.836159756991284 278.740718841553 140.404336005467 0.503709456547961 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769598_at YOR069W.S1 Nexin-1 homolog required for localizing membrane proteins from a prevacuolar/late endosomal compartment back to the late Golgi apparatus; structural component of the retromer membrane coat complex; forms a retromer subcomplex with Vps17p 2.66185778688642 228.453079223633 401.131942749023 VPS5 42147 // retrograde transport, endosome to Golgi // inferred from physical interaction /// 45053 // protein-Golgi retention // inferred from mutant phenotype 5768 // endosome // inferred from direct assay /// 5829 // cytosol // inferred from direct assay /// 30904 // retromer complex // traceable author statement 8565 // protein transporter activity // inferred from sequence similarity /// 8565 // protein transporter activity // inferred from mutant phenotype 423.717346191406 199.809265136719 257.096893310547 378.546539306641 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR069W /GEN=VPS5 /DB_XREF=GI:46562125 /SEG=NC_001147:+453769,455796 /DEF=Vacuolar Protein Sorting. component of the retromer coat that retrieves proteins from late endosomes. /NOTE=Vps5p; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 9700157]; go_function: protein transporter activity [goid GO:0008565] [evidence IMP,ISS] [pmid 9175702]; go_process: protein-Golgi retention [goid GO:0045053] [evidence IMP] [pmid 8649377]; go_process: retrograde transport, endosome to Golgi [goid GO:0042147] [evidence IPI] [pmid 9700157] --- --- --- --- scop // a.2.7.Phenylalanyl-tRNA synthetase (PheRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Phenylalanyl-tRNA synthetase (PheRS) // 2.70000004768372 --- S0005595 // VPS5 SGDID:S0005595, Chr XV from 453769-455796, Verified ORF // sgd // 11 // --- /// GENSCAN00000017511 // cdna:Genscan chromosome:SGD1:XV:453769:455796:1 // ensembl // 11 // --- /// GENEFINDER00000022866 // cdna:GeneFinder chromosome:SGD1:XV:453769:455796:1 // ensembl // 11 // --- /// YOR069W // cdna:known chromosome:SGD1:XV:453769:455796:1 gene:YOR069W // ensembl // 11 // --- --- No cerevisiae_gene -2.66185778688642 -2.12060910139217 1.01806938305447 -1.64808427179086 -1.11932695770381 Max fold change below threshold 4 2.66185778688642 Max fold change at or above threshold 1.04685218866034 -1.10507821609559 -0.554499655898364 0.612725683333612 314.792510986328 104.049871018056 0.330534772546018 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770515_x_at YLR461W.S1 Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth /// Hypothetical protein /// Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 2.6618554371376 30.3861742019653 12.1076192855835 PAU4 /// PAU6 /// PAU1 /// PAU2 /// DAN3 --- 9277 // cell wall (sensu Fungi) // inferred from sequence similarity --- 11.4537210464478 30.2841987609863 30.4881496429443 12.7615175247192 0.334473013877869 0.0561522990465164 0.0461426004767418 0.0676269978284836 A M P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR461W /GEN=PAU4 /DB_XREF=GI:6323494 /SEG=NC_001144:+1062916,1063278 /DEF=Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /NOTE=Pau4p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004453 // PAU4 SGDID:S0004453, Chr XII from 1062916-1063278, Verified ORF // sgd // 11 // --- /// S0005521 // YOL161C SGDID:S0005521, Chr XV from 11910-11548, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018169 // cdna:Genscan chromosome:SGD1:XII:1062916:1063278:1 // ensembl // 11 // --- /// GENEFINDER00000024597 // cdna:GeneFinder chromosome:SGD1:XII:1062916:1063278:1 // ensembl // 11 // --- /// GENSCAN00000017342 // cdna:Genscan chromosome:SGD1:XV:11548:11910:-1 // ensembl // 11 // --- /// GENEFINDER00000022652 // cdna:GeneFinder chromosome:SGD1:XV:11548:11910:-1 // ensembl // 11 // --- /// YLR461W // cdna:known chromosome:SGD1:XII:1062916:1063278:1 gene:YLR461W // ensembl // 11 // --- /// YOL161C // cdna:known chromosome:SGD1:XV:11548:11910:-1 gene:YOL161C // ensembl // 11 // --- S0003987 // sgd // 1 // Cross Hyb Matching Probes /// S0005359 // sgd // 1 // Cross Hyb Matching Probes /// GENSCAN00000017642 // ensembl // 1 // Cross Hyb Matching Probes /// GENEFINDER00000024911 // ensembl // 1 // Cross Hyb Matching Probes /// GENSCAN00000020101 // ensembl // 1 // Cross Hyb Matching Probes /// GENEFINDER00000020637 // ensembl // 1 // Cross Hyb Matching Probes /// YLL064C // ensembl // 1 // Cross Hyb Matching Probes /// YNR076W // ensembl // 1 // Cross Hyb Matching Probes No cerevisiae_gene -1.89593126333831 2.64404891983803 1.6584720339894 2.6618554371376 1.11418092626562 Max fold change below threshold 4 2.6618554371376 Max fold change at or above threshold -0.926773784023575 0.855241940583351 0.874542761529387 -0.803010918089164 21.2468967437744 10.566953733639 0.497341040485606 AAMAPA No 4 0 AMPA 2 1 1 No No x = 1
1776869_at YHL017W.S1 Hypothetical protein 2.66050118796897 293.234893798828 712.056335449219 --- --- 30136 // clathrin-coated vesicle // inferred from direct assay --- 679.317749023438 255.334503173828 331.135284423828 744.794921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL017W /GEN=APM2 /DB_XREF=GI:6321770 /SEG=NC_001140:+70272,71870 /DEF=Hypothetical ORF /NOTE=Yhl017wp; go_component: clathrin-coated vesicle [goid GO:0030136] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001009 // span:192-214,226-248,263-285,297-319,329-351,378-400,415-437 // numtm:7 S0001009 // YHL017W SGDID:S0001009, Chr VIII from 70272-71870, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016539 // cdna:Genscan chromosome:SGD1:VIII:70272:71870:1 // ensembl // 11 // --- /// GENEFINDER00000020230 // cdna:GeneFinder chromosome:SGD1:VIII:70377:71870:1 // ensembl // 11 // --- /// YHL017W // cdna:known chromosome:SGD1:VIII:70272:71870:1 gene:YHL017W // ensembl // 11 // --- --- No cerevisiae_gene -1.31616040543155 -2.66050118796897 1.10050124250423 -2.05148101388665 1.09638666580652 Max fold change below threshold 4 2.66050118796897 Max fold change at or above threshold 0.720405176539853 -1.00844542072355 -0.699357202686798 0.987397446870498 502.645614624023 245.239956836485 0.487898331749942 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779909_at SPAPB1A10.10c.S1 --- 2.66046067592822 --- --- --- --- 5.63426208496094 11.9188718795776 4.30413341522217 2.11777687072754 0.398925989866257 0.0805663987994194 0.366210997104645 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1A10.10c /GEN=ypt71 /DEF=GTPase --- --- --- --- --- --- SPAPB1A10.10c // |ypt71||GTPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.26799405276143 2.11542730882038 -1.06503787377919 -1.30903518581338 -2.66046067592822 Max fold change below threshold 3 2.66046067592822 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775648_at YDL045C.S1 Flavin adenine dinucleotide (FAD) synthetase, performs the second step in synthesis of FAD from riboflavin 2.65915803223591 401.174026489258 1014.23138427734 FAD1 6747 // FAD biosynthesis // inferred from direct assay /// 6747 // FAD biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 3919 // FMN adenylyltransferase activity // inferred from direct assay /// 3919 // FMN adenylyltransferase activity // inferred from sequence similarity 894.7333984375 336.472442626953 465.875610351563 1133.72937011719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL045C /GEN=FAD1 /DB_XREF=GI:6320159 /SEG=NC_001136:-372685,373605 /DEF=Flavin adenine dinucleotide (FAD) synthetase, performs the second step in synthesis of FAD from riboflavin /NOTE=Fad1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 7799934]; go_function: FMN adenylyltransferase activity [goid GO:0003919] [evidence IDA,ISS] [pmid 7799934]; go_process: FAD biosynthesis [goid GO:0006747] [evidence IDA,IMP] [pmid 7799934] --- --- --- --- --- --- S0002203 // FAD1 SGDID:S0002203, Chr IV from 373605-372685, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023905 // cdna:GeneFinder chromosome:SGD1:IV:372685:373176:-1 // ensembl // 9 // --- /// GENSCAN00000025067 // cdna:Genscan chromosome:SGD1:IV:372685:373605:-1 // ensembl // 11 // --- /// YDL045C // cdna:known chromosome:SGD1:IV:372685:373605:-1 gene:YDL045C // ensembl // 11 // --- --- No cerevisiae_gene -1.99226594872868 -2.65915803223591 1.17460437433899 -1.92054140323489 1.26711417288888 Max fold change below threshold 4 2.65915803223591 Max fold change at or above threshold 0.504218393624269 -1.00080432625825 -0.651944701698729 1.14853063433271 707.702705383301 370.931912479119 0.52413521900869 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772071_at SPAC23C11.09.S1 --- 2.65880381610728 --- --- --- --- 1.18259763717651 2.46320486068726 1.28562200069427 2.11988687515259 0.398925989866257 0.567627012729645 0.533936023712158 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C11.09 /DEF=alanine-tRNA ligase (predicted) --- --- --- --- --- --- SPAC23C11.09 // |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.36948775299052 2.0828765281218 -2.65880381610728 1.08711700436315 1.79256816393941 Max fold change below threshold 0 2.65880381610728 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774169_at YMR307W.S1 Beta-1.3-glucanosyltransferase, required for cell wall assembly; localizes to the cell surface via a glycosylphosphatidylinositol (GPI) anchor 2.65818377206232 2576.75817871094 1896.00628662109 GAS1 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 30447 // filamentous growth // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay 42124 // 1,3-beta-glucanosyltransferase activity // inferred from direct assay 1729.10388183594 2011.60693359375 3141.90942382813 2062.90869140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR307W /GEN=GAS1 /DB_XREF=GI:6323967 /SEG=NC_001145:+887002,888681 /DEF=Beta-1.3-glucanosyltransferase, required for cell wall assembly; localizes to the cell surface via a glycosylphosphatidylinositol (GPI) anchor /NOTE=Gas1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 1824714]; go_function: 1,3-beta-glucanosyltransferase activity [goid GO:0042124] [evidence IDA] [pmid 10809732]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9515908] --- --- --- --- --- --- S0004924 // GAS1 SGDID:S0004924, Chr XIII from 887002-888681, Verified ORF // sgd // 11 // --- /// GENSCAN00000018973 // cdna:Genscan chromosome:SGD1:XIII:887002:888681:1 // ensembl // 11 // --- /// GENEFINDER00000021902 // cdna:GeneFinder chromosome:SGD1:XIII:887002:888681:1 // ensembl // 11 // --- /// YMR307W // cdna:known chromosome:SGD1:XIII:887002:888681:1 gene:YMR307W // ensembl // 11 // --- --- No cerevisiae_gene 2.65818377206232 1.16338119110452 -1.50831971675385 1.81707383624175 1.19305075483139 Max fold change below threshold 4 2.65818377206232 Max fold change at or above threshold -0.816518841678915 -0.361799920174389 1.4575430077522 -0.279224245898894 2236.38223266602 621.269620413192 0.277801178769234 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773221_at SPCC576.10c.S1 --- 2.65807687245808 --- --- --- --- 1.75637555122375 1.13008832931519 0.884894073009491 0.959607064723969 0.828612983226776 0.870360970497131 0.943848013877869 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC576.10c /GEN=rpt3 /DEF=19S proteasome regulatory subunit --- --- --- --- --- --- SPCC576.10c // |rpt3||19S proteasome regulatory subunit|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.72908223087351 -1.55419315965159 -2.65807687245808 -1.98484271145629 -1.83030702439543 Max fold change below threshold 0 2.65807687245808 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771895_at SPBC23G7.06c.S1 --- 2.65803998563475 --- --- --- --- 1.43021559715271 1.00143647193909 1.6151567697525 2.35970258712769 0.805419981479645 0.953857004642487 0.870360970497131 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23G7.06c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC23G7.06c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.65803998563475 -1.42816407952806 -1.48085740867314 1.12930999561743 1.64989291951885 Max fold change below threshold 0 2.65803998563475 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775725_s_at YEL076C-A.S1 Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein 2.65710729779082 102.530647277832 65.9744243621826 YRF1-5 /// YRF1-4 /// YRF1-7 /// YRF1-6 /// YRF1-3 /// YRF1-2 /// YRF1-1 722 // telomerase-independent telomere maintenance // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay /// 5634 // nucleus // inferred from curator 4386 // helicase activity // inferred from sequence similarity /// 3678 // DNA helicase activity // inferred from direct assay 54.518123626709 81.2546920776367 123.806602478027 77.4307250976563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL076C-A /DB_XREF=GI:6320759 /SEG=NC_001137:-4185,5114 /DEF=Hypothetical ORF /NOTE=Yel076c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 0.239999994635582 /// scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 2.40000009536743 /// scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 5.0 --- S0002953 // YRF1-1 SGDID:S0002953, Chr IV from 1526304-1531694, Verified ORF // sgd // 11 // --- /// S0002955 // YEL076C-A SGDID:S0002955, Chr V from 5114-4602,4322-4185, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0000992 // YRF1-2 SGDID:S0000992, Chr V from 571475-576520, Verified ORF // sgd // 11 // --- /// S0003528 // YRF1-3 SGDID:S0003528, Chr VII from 1084870-1084888,1085037-1090597, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0001439 // YIL177C SGDID:S0001439, Chr IX from 6147-4987,4598-483, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0003760 // YJL225C SGDID:S0003760, Chr X from 6130-4970,4581-466, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0004456 // YLR464W SGDID:S0004456, Chr XII from 1066569-1067081,1067361-1067498, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0004458 // YRF1-4 SGDID:S0004458, Chr XII from 1067084-1071232, Verified ORF // sgd // 11 // --- /// S0004459 // YRF1-5 SGDID:S0004459, Chr XII from 1072505-1077895, Verified ORF // sgd // 11 // --- /// S0005283 // YRF1-6 SGDID:S0005283, Chr XIV from 6098-6080,5931-371, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0006204 // YRF1-7 SGDID:S0006204, Chr XVI from 6007-5989,5840-280, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000025522 // cdna:Genscan chromosome:SGD1:IV:1526304:1531694:1 // ensembl // 11 // --- /// GENEFINDER00000023783 // cdna:GeneFinder chromosome:SGD1:IV:1526496:1531694:1 // ensembl // 11 // --- /// GENSCAN00000016341 // cdna:Genscan chromosome:SGD1:IX:483:4712:-1 // ensembl // 11 // --- /// GENEFINDER00000019113 // cdna:GeneFinder chromosome:SGD1:IX:483:4997:-1 // ensembl // 11 // --- /// GENEFINDER00000019735 // cdna:GeneFinder chromosome:SGD1:V:264:4407:-1 // ensembl // 11 // --- /// GENSCAN00000016965 // cdna:Genscan chromosome:SGD1:V:571475:576520:1 // ensembl // 11 // --- /// GENEFINDER00000019661 // cdna:GeneFinder chromosome:SGD1:V:571640:576520:1 // ensembl // 11 // --- /// GENSCAN00000019569 // cdna:Genscan chromosome:SGD1:VII:1085210:1090597:1 // ensembl // 11 // --- /// GENEFINDER00000021702 // cdna:GeneFinder chromosome:SGD1:VII:1085402:1090597:1 // ensembl // 11 // --- /// GENSCAN00000023968 // cdna:Genscan chromosome:SGD1:X:466:4695:-1 // ensembl // 11 // --- /// GENEFINDER00000024515 // cdna:GeneFinder chromosome:SGD1:X:466:4980:-1 // ensembl // 11 // --- /// GENSCAN00000018171 // cdna:Genscan chromosome:SGD1:XII:1067084:1071232:1 // ensembl // 11 // --- /// GENEFINDER00000024577 // cdna:GeneFinder chromosome:SGD1:XII:1067276:1071232:1 // ensembl // 11 // --- /// GENSCAN00000018172 // cdna:Genscan chromosome:SGD1:XII:1072505:1077895:1 // ensembl // 11 // --- /// GENEFINDER00000024799 // cdna:GeneFinder chromosome:SGD1:XII:1072697:1077895:1 // ensembl // 11 // --- /// GENSCAN00000019774 // cdna:Genscan chromosome:SGD1:XIV:371:5758:-1 // ensembl // 11 // --- /// GENEFINDER00000020706 // cdna:GeneFinder chromosome:SGD1:XIV:371:5566:-1 // ensembl // 11 // --- /// GENSCAN00000017839 // cdna:Genscan chromosome:SGD1:XV:1085469:1090859:1 // ensembl // 11 // --- /// GENEFINDER00000022814 // cdna:GeneFinder chromosome:SGD1:XV:1085661:1090859:1 // ensembl // 11 // --- /// GENSCAN00000016966 // cdna:Genscan chromosome:SGD1:XVI:280:5667:-1 // ensembl // 11 // --- /// GENEFINDER00000020788 // cdna:GeneFinder chromosome:SGD1:XVI:280:5475:-1 // ensembl // 11 // --- /// YDR545W // cdna:known chromosome:SGD1:IV:1526304:1531694:1 gene:YDR545W // ensembl // 11 // --- /// YIL177C // cdna:known chromosome:SGD1:IX:483:6147:-1 gene:YIL177C // ensembl // 11 // --- /// YEL076C-A // cdna:known chromosome:SGD1:V:4185:5114:-1 gene:YEL076C-A // ensembl // 11 // --- /// YER190W // cdna:known chromosome:SGD1:V:571475:576520:1 gene:YER190W // ensembl // 11 // --- /// YGR296W // cdna:known chromosome:SGD1:VII:1084870:1090597:1 gene:YGR296W // ensembl // 11 // --- /// YJL225C // cdna:known chromosome:SGD1:X:466:6130:-1 gene:YJL225C // ensembl // 11 // --- /// YLR464W // cdna:known chromosome:SGD1:XII:1066569:1067498:1 gene:YLR464W // ensembl // 11 // --- /// YLR466W // cdna:known chromosome:SGD1:XII:1067084:1071232:1 gene:YLR466W // ensembl // 11 // --- /// YLR467W // cdna:known chromosome:SGD1:XII:1072505:1077895:1 gene:YLR467W // ensembl // 11 // --- /// YNL339C // cdna:known chromosome:SGD1:XIV:371:6098:-1 gene:YNL339C // ensembl // 11 // --- /// YPL283C // cdna:known chromosome:SGD1:XVI:280:6007:-1 gene:YPL283C // ensembl // 11 // --- --- No cerevisiae_gene 2.65710729779082 1.49041615287415 1.95218169779323 2.27092559761857 1.42027494614144 Max fold change below threshold 4 2.65710729779082 Max fold change at or above threshold -1.02916948090195 -0.103761569864028 1.36904802372958 -0.236116972963596 84.2525358200073 28.8916575404465 0.342917364554689 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778980_at YDR324C.S1 Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA 2.6569605809651 80.4604263305664 120.635360717773 UTP4 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction 30515 // snoRNA binding // inferred from physical interaction 124.246047973633 73.8890686035156 87.0317840576172 117.024673461914 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR324C /GEN=UTP4 /DB_XREF=GI:6320531 /SEG=NC_001136:-1114426,1116756 /DEF=Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA /NOTE=Utp4p; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: snoRNA binding [goid GO:0030515] [evidence IPI] [pmid 12068309]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP,IPI] [pmid 12068309] --- --- --- --- --- --- S0002732 // UTP4 SGDID:S0002732, Chr IV from 1116758-1114428, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023782 // cdna:GeneFinder chromosome:SGD1:IV:1114428:1116758:-1 // ensembl // 11 // --- /// GENSCAN00000025354 // cdna:Genscan chromosome:SGD1:IV:1114428:1116686:-1 // ensembl // 11 // --- /// YDR324C // cdna:known chromosome:SGD1:IV:1114428:1116758:-1 gene:YDR324C // ensembl // 11 // --- --- No cerevisiae_gene 2.6569605809651 -1.68152137145387 -1.53130475518292 -1.42759394534965 -1.06170813639629 Max fold change below threshold 4 2.6569605809651 Max fold change at or above threshold 0.987861974140061 -1.1112780731737 -0.563421536001702 0.686837635035339 100.54789352417 23.9893376502241 0.23858617828187 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780205_at SPBC365.09c.S1 --- 2.65665997237644 --- --- --- --- 2.32609272003174 1.23198866844177 0.935717165470123 5.02975177764893 0.780517995357513 0.919434010982513 0.932372987270355 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC365.09c /DEF=transcription factor (predicted) --- --- --- --- --- --- SPBC365.09c // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.64179169647634 -1.8880796387306 -2.65665997237644 -2.4858929662395 2.16231783640177 Max fold change below threshold 1 2.65665997237644 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778525_at SPAPB15E9.01c.S1 --- 2.65658130930284 --- --- --- --- 12.7785701751709 12.6237049102783 9.45388698577881 5.39331197738647 0.0239257998764515 0.129638999700546 0.111571997404099 0.194580003619194 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB15E9.01c /DEF=glycoprotein (predicted) --- --- --- --- --- --- D89219 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1291. // gb // 10 // --- /// SPAPB15E9.01c // ||SPAPB18E9.06c|glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.29425603398623 -1.01226781408416 -2.65658130930284 -1.35167367606502 -2.36933636117287 Max fold change below threshold 4 2.65658130930284 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1773352_at YPL060W.S1 Mitochondrial inner membrane magnesium transporter, involved in maintenance of magnesium concentrations inside mitochondria; indirectly affects splicing of group II introns; functionally and structurally related to Mrs2p 2.65639685888978 813.109558105469 623.660217285156 LPE10 45016 // mitochondrial magnesium ion transport // inferred from genetic interaction /// 45016 // mitochondrial magnesium ion transport // inferred from sequence similarity /// 45016 // mitochondrial magnesium ion transport // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay 15095 // magnesium ion transporter activity // inferred from genetic interaction /// 15095 // magnesium ion transporter activity // inferred from sequence similarity /// 15095 // magnesium ion transporter activity // inferred from mutant phenotype 613.314758300781 1078.64965820313 547.569458007813 634.005676269531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL060W /GEN=LPE10 /DB_XREF=GI:6325197 /SEG=NC_001148:+434518,435759 /DEF=mitochondrial protein with homology to MRS2 /NOTE=Lpe10p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 11254124]; go_function: magnesium ion transporter activity [goid GO:0015095] [evidence IGI,IMP,ISS] [pmid 11254124]; go_process: mitochondrial magnesium ion transport [goid GO:0045016] [evidence IGI,IMP,ISS] [pmid 11254124] --- --- --- --- --- S0005981 // span:331-353,365-384 // numtm:2 S0005981 // LPE10 SGDID:S0005981, Chr XVI from 434520-435761, Verified ORF // sgd // 11 // --- /// GENSCAN00000017142 // cdna:Genscan chromosome:SGD1:XVI:434520:435761:1 // ensembl // 11 // --- /// YPL060W // cdna:known chromosome:SGD1:XVI:434520:435761:1 gene:YPL060W // ensembl // 11 // --- --- No cerevisiae_gene 2.65639685888978 1.75872118452127 -1.42460036139036 -1.12006750802385 1.03373621405439 Max fold change below threshold 4 2.65639685888978 Max fold change at or above threshold -0.432410310333724 1.48264975131647 -0.70298145996958 -0.347257981013166 718.384887695313 242.987104802012 0.33824083574691 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773562_at YNL034W.S1 Hypothetical protein /// Hypothetical protein 2.6555816052034 56.234546661377 49.0140361785889 --- --- --- --- 52.2635841369629 56.7700691223145 55.6990242004395 45.7644882202148 0.014160200022161 0.0375977009534836 0.0952147990465164 0.00122069998178631 P P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL034W /GEN=NCE103 /DB_XREF=GI:6324294 /SEG=NC_001146:+570475,572313 /DEF=Hypothetical ORF /NOTE=Ynl034wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 5.80000019073486 --- S0004979 // YNL034W SGDID:S0004979, Chr XIV from 570476-572314, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000020010 // cdna:Genscan chromosome:SGD1:XIV:570476:572314:1 // ensembl // 10 // --- /// GENEFINDER00000020679 // cdna:GeneFinder chromosome:SGD1:XIV:570476:572314:1 // ensembl // 10 // --- /// YNL034W // cdna:known chromosome:SGD1:XIV:570476:572314:1 gene:YNL034W // ensembl // 10 // --- --- No cerevisiae_gene -2.6555816052034 1.08622609910453 1.28684067140199 1.065732959578 -1.14201176872065 Max fold change below threshold 4 2.6555816052034 Max fold change at or above threshold -0.0727115866817017 0.835708312408584 0.619806445873252 -1.38280317160014 52.6242914199829 4.96079510132315 0.0942681595792357 PPPPAP Called_P_>2EXP 3 0 PPAP 1 3 0 Yes Yes 2 < x = 3
1775170_at YBL010C.S1 Hypothetical protein 2.65530939382359 70.1739082336426 162.20539855957 --- --- 30136 // clathrin-coated vesicle // inferred from direct assay --- 154.629898071289 58.2342300415039 82.1135864257813 169.780899047852 0.000244141003349796 0.00195312988944352 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL010C /GEN=SCT1 /DB_XREF=GI:6319461 /SEG=NC_001134:-206072,206914 /DEF=Hypothetical ORF /NOTE=Ybl010cp; go_component: clathrin-coated vesicle [goid GO:0030136] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000106 // YBL010C SGDID:S0000106, Chr II from 206952-206110, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021129 // cdna:Genscan chromosome:SGD1:II:206110:206952:-1 // ensembl // 11 // --- /// YBL010C // cdna:known chromosome:SGD1:II:206110:206952:-1 gene:YBL010C // ensembl // 11 // --- --- No cerevisiae_gene -1.65446057800837 -2.65530939382359 1.26832138901155 -1.8831219631486 1.09798235118526 Max fold change below threshold 4 2.65530939382359 Max fold change at or above threshold 0.706956529817585 -1.06586119120665 -0.626694711737683 0.985599373126748 116.189653396606 54.3742692136973 0.467978581776933 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770997_at SPBC27B12.13.S1 --- 2.65508469193998 --- --- --- --- 8.86079025268555 3.33729100227356 9.63243389129639 5.35165691375732 0.24609400331974 0.665526986122131 0.303710997104645 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC27B12.13 /GEN=tom40 /DEF=mitochondrial TOM complex component --- --- --- --- --- --- SPBC27B12.13 // |tom40|SPBC8D2.22|mitochondrial TOM complex component|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.04850938570043 -2.65508469193998 1.52031866240917 1.08708519405219 -1.65570969803902 Max fold change below threshold 4 2.65508469193998 Max fold change at or above threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1770379_at YBR108W.S1 Protein interacting with Rsv167p 2.65437232491797 206.813766479492 351.415390014648 --- --- 45121 // lipid raft // inferred from direct assay --- 320.527770996094 120.754638671875 292.872894287109 382.303009033203 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR108W /GEN=IML3 /DB_XREF=GI:6319584 /SEG=NC_001134:+454779,457325 /DEF=Hypothetical ORF /NOTE=Ybr108wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000312 // YBR108W SGDID:S0000312, Chr II from 454816-457659, Uncharacterized ORF // sgd // 9 // --- /// GENSCAN00000021226 // cdna:Genscan chromosome:SGD1:II:454816:457659:1 // ensembl // 9 // --- /// GENEFINDER00000022164 // cdna:GeneFinder chromosome:SGD1:II:454816:457659:1 // ensembl // 9 // --- /// YBR108W // cdna:known chromosome:SGD1:II:454816:457659:1 gene:YBR108W // ensembl // 9 // --- --- No cerevisiae_gene -1.89145349430865 -2.65437232491797 1.05904834917539 -1.09442620757479 1.1927297526986 Max fold change below threshold 4 2.65437232491797 Max fold change at or above threshold 0.36977014888292 -1.41396435644752 0.122845263376209 0.921348944188395 279.11457824707 111.997122737282 0.40125859222639 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770018_at SPAC222.12c.S1 --- 2.65294629936652 --- --- --- --- 3.55223560333252 2.9512197971344 2.26047682762146 1.33897757530212 0.5 0.696289002895355 0.725830018520355 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC222.12c /GEN=atp2 /DEF=F1-ATPase beta subunit (PMID 6228552) --- --- --- --- --- --- SPAC222.12c // |atp2||F1-ATPase beta subunit |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.82768202076045 -1.20364996425603 -1.7922810263375 -1.57145411088787 -2.65294629936652 Max fold change below threshold 2 2.65294629936652 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774113_at YGR030C.S1 Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends 2.65272063051555 1125.96960449219 516.531860351563 POP6 6364 // rRNA processing // traceable author statement /// 8033 // tRNA processing // traceable author statement 172 // ribonuclease MRP complex // inferred from direct assay /// 5655 // nucleolar ribonuclease P complex // inferred from direct assay 171 // ribonuclease MRP activity // inferred from direct assay /// 4526 // ribonuclease P activity // inferred from direct assay 460.885864257813 1222.60144042969 1029.33776855469 572.177856445313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR030C /GEN=POP6 /DB_XREF=GI:6321467 /SEG=NC_001139:-545683,546159 /DEF=Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends /NOTE=Pop6p; go_component: nucleolar ribonuclease P complex [goid GO:0005655] [evidence IDA] [pmid 9620854]; go_component: ribonuclease MRP complex [goid GO:0000172] [evidence IDA] [pmid 9620854]; go_function: ribonuclease MRP activity [goid GO:0000171] [evidence IDA] [pmid 9620854]; go_function: ribonuclease P activity [goid GO:0004526] [evidence IDA] [pmid 9620854]; go_process: rRNA processing [goid GO:0006364] [evidence TAS] [pmid 9620854]; go_process: tRNA processing [goid GO:0008033] [evidence TAS] [pmid 9620854] --- --- --- --- --- --- S0003262 // POP6 SGDID:S0003262, Chr VII from 546161-545685, reverse complement, Verified ORF // sgd // 11 // --- /// YGR030C // cdna:known chromosome:SGD1:VII:545685:546161:-1 gene:YGR030C // ensembl // 11 // --- --- No cerevisiae_gene 1.5181659650962 2.65272063051555 1.26000317302494 2.23338975738013 1.24147408462336 Max fold change below threshold 4 2.65272063051555 Max fold change at or above threshold -0.991517750037924 1.10428731026816 0.572536359966518 -0.685305920196758 821.250732421875 363.447722595263 0.442553909843651 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-Scv2-r2-Ec-bioB-3_at AFFX-Scv2-r2-Ec-bioB-3 --- 2.65257664769598 --- --- --- --- 352.748657226563 361.260314941406 132.9833984375 144.16423034668 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2772-3004 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --- --- --- --- --- --- AFFX-Scv2-r2-Ec-bioB-3 // --- // affx // --- // --- --- AFFX_control No -1.57462362673515 1.02412952548641 -1.99893195391215 -2.65257664769598 -2.44685284538535 Max fold change below threshold 4 2.65257664769598 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775130_at YBR155W.S1 TPR-containing co-chaperone; binds both Hsp82p (Hsp90) and Ssa1p (Hsp70) and stimulates the ATPase activity of SSA1, ts mutants reduce Hsp82p function while over expression suppresses the phenotypes of an HSP82 ts allele and a cpr7 deletion 2.65250984791868 101.528915405273 301.596252441406 CNS1 6457 // protein folding // inferred from genetic interaction /// 6457 // protein folding // inferred from physical interaction 5737 // cytoplasm // inferred from physical interaction 51082 // unfolded protein binding // inferred from physical interaction 267.103240966797 100.698303222656 102.359527587891 336.089263916016 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR155W /GEN=CNS1 /DB_XREF=GI:6319631 /SEG=NC_001134:+549727,550884 /DEF=cyclophilin seven suppressor /NOTE=Cns1p; go_component: cytoplasm [goid GO:0005737] [evidence IPI] [pmid 9819421]; go_function: chaperone activity [goid GO:0003754] [evidence IPI] [pmid 9819421]; go_process: protein folding [goid GO:0006457] [evidence IGI] [pmid 9819421] --- --- --- --- --- --- S0000359 // CNS1 SGDID:S0000359, Chr II from 549765-550922, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022307 // cdna:GeneFinder chromosome:SGD1:II:549765:551051:1 // ensembl // 11 // --- /// GENSCAN00000021263 // cdna:Genscan chromosome:SGD1:II:550455:550922:1 // ensembl // 11 // --- /// YBR155W // cdna:known chromosome:SGD1:II:549765:550922:1 gene:YBR155W // ensembl // 11 // --- --- No cerevisiae_gene 1.37835647869125 -2.65250984791868 -1.00721471113364 -2.60946144693223 1.25827475061523 Max fold change below threshold 4 2.65250984791868 Max fold change at or above threshold 0.551249572625671 -0.848349622015244 -0.834377390690745 1.13147744008032 201.56258392334 118.894708128804 0.589864973025069 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779470_at SPAC1805.15c.S1 --- 2.65114008890968 --- --- --- --- 0.823567390441895 1.22324776649475 0.345469444990158 0.703816711902618 0.919434010982513 0.919434010982513 0.998778998851776 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1805.15c /GEN=pub2 /DEF=ubiquitin-protein ligase (E2) (PMID 11956316) --- --- --- --- --- --- SPAC1805.15c // |pub2||ubiquitin-protein ligase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.11747371096595 1.48530379018334 2.65114008890968 -2.38390804855508 -1.17014469323349 Max fold change below threshold 0 2.65114008890968 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776811_at YKL029C.S1 Mitochondrial malic enzyme, catalyzes the oxidative decarboxylation of malate to pyruvate, which is a key intermediate in sugar metabolism and a precursor for synthesis of several amino acids 2.65098004608825 487.786849975586 315.111679077148 MAE1 6090 // pyruvate metabolism // inferred from mutant phenotype /// 6520 // amino acid metabolism // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 4470 // malic enzyme activity // inferred from direct assay /// 4470 // malic enzyme activity // inferred from sequence similarity 275.271179199219 369.869049072266 605.704650878906 354.952178955078 0.014160200022161 0.0239257998764515 0.00292969006113708 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL029C /GEN=MAE1 /DB_XREF=GI:6322823 /SEG=NC_001143:-382359,384368 /DEF=Mitochondrial malic enzyme /NOTE=Mae1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 9603875]; go_function: malate dehydrogenase (oxaloacetate-decarboxylating) activity [goid GO:0016619] [evidence IDA,ISS] [pmid 9603875]; go_process: amino acid metabolism [goid GO:0006520] [evidence IMP] [pmid 9603875]; go_process: pyruvate metabolism [goid GO:0006090] [evidence IMP] [pmid 9603875] --- --- --- --- --- --- S0001512 // MAE1 SGDID:S0001512, Chr XI from 384368-382359, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018395 // cdna:Genscan chromosome:SGD1:XI:382359:384368:-1 // ensembl // 11 // --- /// GENEFINDER00000022966 // cdna:GeneFinder chromosome:SGD1:XI:382359:384368:-1 // ensembl // 11 // --- /// YKL029C // cdna:known chromosome:SGD1:XI:382359:384368:-1 gene:YKL029C // ensembl // 11 // --- YKL030W // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene 2.65098004608825 1.34365337536693 -1.05243049037076 2.20039254614646 1.2894636481293 Max fold change below threshold 4 2.65098004608825 Max fold change at or above threshold -0.886321172900101 -0.221831021838266 1.43476478608599 -0.326612591347622 401.449264526367 142.361583120355 0.35461911553958 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1773273_at YBL015W.S1 Acetyl-coA hydrolase, primarily localized to mitochondria; required for acetate utilization and for diploid pseudohyphal growth 2.65081730237698 4200.86572265625 1650.73907470703 ACH1 6083 // acetate metabolism // inferred from mutant phenotype /// 6084 // acetyl-CoA metabolism // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 3986 // acetyl-CoA hydrolase activity // traceable author statement /// 3986 // acetyl-CoA hydrolase activity // inferred from direct assay 1591.03918457031 4217.55419921875 4184.17724609375 1710.43896484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL015W /GEN=ACH1 /DB_XREF=GI:6319456 /SEG=NC_001134:+194087,195667 /DEF=Acetyl-coA hydrolase, primarily localized to mitochondria; required for acetate utilization and for diploid pseudohyphal growth /NOTE=Ach1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 11746603]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 12606555]; go_function: acetyl-CoA hydrolase activity [goid GO:0003986] [evidence TAS]; go_function: acetyl-CoA hydrolase activity [goid GO:0003986] [evidence IDA] [pmid 12606555]; go_process: acetate metabolism [goid GO:0006083] [evidence IMP] [pmid 8841387]; go_process: acetyl-CoA metabolism [goid GO:0006084] [evidence TAS] --- --- --- --- --- --- S0000111 // ACH1 SGDID:S0000111, Chr II from 194125-195705, Verified ORF // sgd // 11 // --- /// M31036 // S.cerevisiae acetyl-CoA hydrolase (ACH1) mRNA, complete cds. // gb // 10 // --- /// GENSCAN00000021126 // cdna:Genscan chromosome:SGD1:II:194125:195705:1 // ensembl // 11 // --- /// GENEFINDER00000022395 // cdna:GeneFinder chromosome:SGD1:II:194125:195705:1 // ensembl // 11 // --- /// YBL015W // cdna:known chromosome:SGD1:II:194125:195705:1 gene:YBL015W // ensembl // 11 // --- --- No cerevisiae_gene -1.09564353309545 2.65081730237698 1.00109530663867 2.629839218714 1.07504515377834 Max fold change below threshold 4 2.65081730237698 Max fold change at or above threshold -0.906038478863211 0.876842292366202 0.854185986349709 -0.8249897998527 2925.80239868164 1473.18601279057 0.503515211230391 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778233_at YLL061W.S1 High-affinity S-methylmethionine permease, required for utilization of S-methylmethionine as a sulfur source; has similarity to S-adenosylmethionine permease Sam3p 2.64927725260607 886.214263916016 330.332305908203 MMP1 15806 // S-methylmethionine transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from mutant phenotype 100 // S-methylmethionine transporter activity // inferred from sequence similarity /// 100 // S-methylmethionine transporter activity // inferred from mutant phenotype 347.783416748047 921.374694824219 851.053833007813 312.881195068359 0.000732421991415322 0.00122069998178631 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL061W /GEN=MMP1 /DB_XREF=GI:6322967 /SEG=NC_001144:+17956,19707 /DEF=S-MethylMethionine Permease /NOTE=Mmp1p; go_component: plasma membrane [goid GO:0005886] [evidence IMP,ISS] [pmid 10497160]; go_function: S-methylmethionine transporter activity [goid GO:0000100] [evidence IMP,ISS] [pmid 10497160]; go_process: S-methylmethionine transport [goid GO:0015806] [evidence IMP] [pmid 10497160] --- --- --- --- --- S0003984 // span:77-96,106-128,149-171,186-208,215-237,252-274,299-321,354-376,404-421,431-453,474-496,511-530 // numtm:12 S0003984 // MMP1 SGDID:S0003984, Chr XII from 17956-19707, Verified ORF // sgd // 11 // --- /// GENSCAN00000017648 // cdna:Genscan chromosome:SGD1:XII:17956:19707:1 // ensembl // 11 // --- /// GENEFINDER00000024664 // cdna:GeneFinder chromosome:SGD1:XII:17956:19707:1 // ensembl // 11 // --- /// YLL061W // cdna:known chromosome:SGD1:XII:17956:19707:1 gene:YLL061W // ensembl // 11 // --- --- No cerevisiae_gene 2.34108257627323 2.64927725260607 1.85931041551076 2.44707996995832 -1.11155103671878 Max fold change below threshold 4 2.64927725260607 Max fold change at or above threshold -0.807633043573588 0.970751939093594 0.752726370361178 -0.915845265881184 608.273284912109 322.534931225022 0.530246748008382 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778228_at YCR043C.S1 Hypothetical protein 2.64923386412798 239.268569946289 635.590362548828 --- --- 5794 // Golgi apparatus // inferred from direct assay --- 603.884887695313 227.946990966797 250.590148925781 667.295837402344 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR043C /GEN=TAF2 /DB_XREF=GI:6319891 /SEG=NC_001135:-206256,206639 /DEF=Hypothetical ORF /NOTE=Ycr043cp; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000639 // span:75-97 // numtm:1 S0000639 // YCR043C SGDID:S0000639, Chr III from 206639-206256, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023394 // cdna:GeneFinder chromosome:SGD1:III:206256:206639:-1 // ensembl // 11 // --- /// YCR043C // cdna:known chromosome:SGD1:III:206256:206639:-1 gene:YCR043C // ensembl // 11 // --- --- No cerevisiae_gene -1.70033434240409 -2.64923386412798 -1.00979467305894 -2.40985086717902 1.10500502827457 Max fold change below threshold 4 2.64923386412798 Max fold change at or above threshold 0.722269327524563 -0.908968691036036 -0.810717409522797 0.99741677303427 437.429466247559 230.461706048417 0.52685455331898 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780169_at YER132C.S1 Protein with an N-terminal kelch-like domain, putative negative regulator of early meiotic gene expression; required, with Mds3p, for growth under alkaline conditions 2.64801829957322 73.8199844360352 198.949897766113 PMD1 30435 // sporulation // inferred from genetic interaction /// 30435 // sporulation // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 181.913131713867 78.9421310424805 68.6978378295898 215.986663818359 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER132C /GEN=PMD1 /DB_XREF=GI:6320979 /SEG=NC_001137:-425184,430445 /DEF=Paralog of MDS3 /NOTE=Pmd1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: sporulation [goid GO:0030435] [evidence IGI,IMP] [pmid 9383076] --- --- --- --- --- --- S0000934 // PMD1 SGDID:S0000934, Chr V from 430445-425184, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016913 // cdna:Genscan chromosome:SGD1:V:425184:430445:-1 // ensembl // 11 // --- /// GENEFINDER00000019698 // cdna:GeneFinder chromosome:SGD1:V:425184:429674:-1 // ensembl // 11 // --- /// YER132C // cdna:known chromosome:SGD1:V:425184:430445:-1 gene:YER132C // ensembl // 11 // --- --- No cerevisiae_gene -1.65719059918949 -2.30438587496423 -1.03527460762307 -2.64801829957322 1.18730661048751 Max fold change below threshold 4 2.64801829957322 Max fold change at or above threshold 0.617837409157805 -0.779523993017484 -0.918543521184868 1.08023010504455 136.384941101074 73.6895984897612 0.540305974360836 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779535_at YNL075W.S1 Component of the SSU processome, which is required for pre-18S rRNA processing; interacts with Mpp10p; member of a superfamily of proteins that contain a sigma(70)-like motif and associate with RNAs 2.64690697348177 169.849426269531 454.436218261719 IMP4 154 // rRNA modification // traceable author statement /// 6365 // 35S primary transcript processing // traceable author statement /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5732 // small nucleolar ribonucleoprotein complex // traceable author statement /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 30532 // small nuclear ribonucleoprotein complex // traceable author statement 42134 // rRNA primary transcript binding // inferred from physical interaction 421.495056152344 180.458251953125 159.240600585938 487.377380371094 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL075W /GEN=IMP4 /DB_XREF=GI:6324254 /SEG=NC_001146:+485606,486478 /DEF=Component of the SSU processome, which is required for pre-18S rRNA processing; interacts with Mpp10p; member of a superfamily of proteins that contain a sigma(70)-like motif and associate with RNAs /NOTE=Imp4p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence TAS] [pmid 10690410]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence TAS] [pmid 10690410]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: rRNA primary transcript binding [goid GO:0042134] [evidence IPI] [pmid 11864606]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IPI] [pmid 12068309]; go_process: rRNA modification [goid GO:0000154] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0005019 // IMP4 SGDID:S0005019, Chr XIV from 485606-486478, Verified ORF // sgd // 11 // --- /// GENSCAN00000019972 // cdna:Genscan chromosome:SGD1:XIV:485606:486478:1 // ensembl // 11 // --- /// GENEFINDER00000020418 // cdna:GeneFinder chromosome:SGD1:XIV:485606:486478:1 // ensembl // 11 // --- /// YNL075W // cdna:known chromosome:SGD1:XIV:485606:486478:1 gene:YNL075W // ensembl // 11 // --- --- No cerevisiae_gene 2.23459799950042 -2.33569289068493 -1.22817619762863 -2.64690697348177 1.15630627988893 Max fold change below threshold 4 2.64690697348177 Max fold change at or above threshold 0.655910193691944 -0.789862711989852 -0.917129191359236 1.05108170965714 312.142822265625 166.718302198056 0.53410903697213 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771401_at YPR140W.S1 Lyso-phosphatidylcholine acyltransferase, required for normal phospholipid content of mitochondrial membranes; may remodel acyl groups of cardiolipin in the inner membrane; similar to human tafazzin, which is implicated in Barth syndrome 2.64674713605009 749.2109375 1093.31396484375 TAZ1 7007 // inner mitochondrial membrane organization and biogenesis // inferred from mutant phenotype /// 8654 // phospholipid biosynthesis // inferred from sequence similarity /// 8654 // phospholipid biosynthesis // inferred from mutant phenotype /// 42775 // ATP synthesis coupled electron transport (sensu Eukaryota) // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 8415 // acyltransferase activity // inferred from sequence similarity /// 8415 // acyltransferase activity // inferred from mutant phenotype 980.925537109375 697.425537109375 800.996337890625 1205.70239257813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR140W /GEN=TAZ1 /DB_XREF=GI:6325398 /SEG=NC_001148:+814385,815530 /DEF=Putative acyltransferase, required for normal phospholipid content of mitochondrial membranes; may remodel the acyl groups of cardiolipin in the inner membrane; similar to human tafazzin, which is implicated in Barth syndrome /NOTE=Taz1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: acyltransferase activity [goid GO:0008415] [evidence ISS] [pmid 9259571]; go_process: inner mitochondrial membrane organization and biogenesis [goid GO:0007007] [evidence IMP] [pmid 14651618]; go_process: phospholipid biosynthesis [goid GO:0008654] [evidence IMP] [pmid 14651618]; go_process: phospholipid biosynthesis [goid GO:0008654] [evidence ISS] [pmid 9259571] --- --- --- --- --- --- S0006344 // TAZ1 SGDID:S0006344, Chr XVI from 814387-815532, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020812 // cdna:GeneFinder chromosome:SGD1:XVI:814387:815532:1 // ensembl // 11 // --- /// YPR140W // cdna:known chromosome:SGD1:XVI:814387:815532:1 gene:YPR140W // ensembl // 11 // --- GENSCAN00000017291 // ensembl // 8 // Cross Hyb Matching Probes /// M31719 // gb // 7 // Negative Strand Matching Probes No cerevisiae_gene -2.64674713605009 -1.40649500902279 1.7510379253092 -1.22463173763389 1.22914772525051 Max fold change below threshold 4 2.64674713605009 Max fold change at or above threshold 0.267685966837565 -1.00427257177955 -0.539589099451072 1.27617570439306 921.262451171875 222.884623509996 0.241933906267947 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772386_at YAL015C.S1 DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase involved in base excision repair, localizes to the nucleus and mitochondrion 2.64652671400613 390.888961791992 841.412475585938 NTG1 6281 // DNA repair // inferred from direct assay /// 6284 // base-excision repair // inferred from direct assay /// 6285 // base-excision repair, AP site formation // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 703 // pyrimidine-specific oxidized base lesion DNA N-glycosylase activity // inferred from direct assay /// 703 // pyrimidine-specific oxidized base lesion DNA N-glycosylase activity // inferred from sequence similarity /// 3906 // DNA-(apurinic or apyrimidinic site) lyase activity // inferred from direct assay /// 8534 // purine-specific oxidized base lesion DNA N-glycosylase activity // inferred from direct assay 790.820190429688 298.814361572266 482.963562011719 892.004760742188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL015C /GEN=NTG1 /DB_XREF=GI:6319304 /SEG=NC_001133:-126906,128105 /DEF=DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase involved in base excision repair, localizes to the nucleus and mitochondrion /NOTE=Ntg1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 10207101]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10207101]; go_function: DNA-(apurinic or apyrimidinic site) lyase activity [goid GO:0003906] [evidence IDA] [pmid 14500818]; go_function: purine-specific oxidized base lesion DNA N-glycosylase activity [goid GO:0008534] [evidence IDA] [pmid 8855249]; go_function: pyrimidine-specific oxidized base lesion DNA N-glycosylase activity [goid GO:0000703] [evidence IDA,ISS] [pmid 9020769]; go_process: DNA repair [goid GO:0006281] [evidence IDA] [pmid 8855249]; go_process: base-excision repair [goid GO:0006284] [evidence IDA] [pmid 14500818]; go_process: base-excision repair, AP site formation [goid GO:0006285] [evidence IDA] [pmid 9826748] --- --- --- --- --- --- S0000013 // NTG1 SGDID:S0000013, Chr I from 128103-126904, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018233 // cdna:GeneFinder chromosome:SGD1:I:126904:128103:-1 // ensembl // 11 // --- /// GENSCAN00000020367 // cdna:Genscan chromosome:SGD1:I:126904:128076:-1 // ensembl // 11 // --- /// YAL015C // cdna:known chromosome:SGD1:I:126904:128103:-1 gene:YAL015C // ensembl // 11 // --- --- No cerevisiae_gene -1.12691091655111 -2.64652671400613 1.01883150451215 -1.63743241236592 1.12794889601582 Max fold change below threshold 4 2.64652671400613 Max fold change at or above threshold 0.637737460471176 -1.15862995683175 -0.486280963812641 1.00717346017321 616.150718688965 273.889308010341 0.444516738685493 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779448_at YMR036C.S1 Protein tyrosine phosphatase involved in cell cycle control; regulates the phosphorylation state of Cdc28p; homolog of S. pombe cdc25 2.64631328320745 937.8720703125 1474.04125976563 MIH1 79 // regulation of cyclin dependent protein kinase activity // inferred from mutant phenotype /// 79 // regulation of cyclin dependent protein kinase activity // inferred from genetic interaction /// 86 // G2/M transition of mitotic cell cycle // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4725 // protein tyrosine phosphatase activity // inferred from sequence similarity 1413.19299316406 1002.13543701172 873.608703613281 1534.88952636719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR036C /GEN=MIH1 /DB_XREF=GI:6323679 /SEG=NC_001145:-341855,343519 /DEF=S. pombe cdc25+ homolog /NOTE=Mih1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: protein tyrosine phosphatase activity [goid GO:0004725] [evidence ISS] [pmid 2649252]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence IDA] [pmid 2649252]; go_process: regulation of cyclin dependent protein kinase activity [goid GO:0000079] [evidence IGI,IMP] [pmid 2649252] --- --- --- --- scop // a.4.5.TnsA endonuclease, C-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; TnsA endonuclease, C-terminal domain // 3.0 --- S0004639 // MIH1 SGDID:S0004639, Chr XIII from 343519-341855, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018745 // cdna:Genscan chromosome:SGD1:XIII:341855:343519:-1 // ensembl // 11 // --- /// YMR036C // cdna:known chromosome:SGD1:XIII:341855:343519:-1 gene:YMR036C // ensembl // 11 // --- --- No cerevisiae_gene -2.64631328320745 -1.41018163909869 1.30425096509188 -1.61764985550057 1.08611458858896 Max fold change below threshold 4 2.64631328320745 Max fold change at or above threshold 0.651933761314459 -0.641190379243978 -1.04551580564008 1.0347724235696 1205.95666503906 317.879423374486 0.263591082988201 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779550_at YCL016C.S1 Subunit of a complex with Ctf8p and Ctf18p that shares some components with Replication Factor C, required for sister chromatid cohesion 2.64526931128348 219.110778808594 457.030487060547 DCC1 7064 // mitotic sister chromatid cohesion // inferred from mutant phenotype 5663 // DNA replication factor C complex // inferred from physical interaction --- 412.935516357422 156.103393554688 282.1181640625 501.125457763672 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL016C /GEN=DCC1 /DB_XREF=GI:10383774 /SEG=NC_001135:-94620,95762 /DEF=Defective in sister Chromatid Cohesion /NOTE=Dcc1p; go_component: DNA replication factor C complex [goid GO:0005663] [evidence IPI] [pmid 11389843]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitotic sister chromatid cohesion [goid GO:0007064] [evidence IMP] [pmid 11389843] --- --- --- --- --- --- S0000521 // DCC1 SGDID:S0000521, Chr III from 95762-94620, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023379 // cdna:GeneFinder chromosome:SGD1:III:92776:95762:-1 // ensembl // 10 // --- /// GENSCAN00000022453 // cdna:Genscan chromosome:SGD1:III:94620:95762:-1 // ensembl // 11 // --- /// YCL016C // cdna:known chromosome:SGD1:III:94620:95762:-1 gene:YCL016C // ensembl // 11 // --- --- No cerevisiae_gene -1.97012404319865 -2.64526931128348 1.22652981423274 -1.46369702117422 1.21356831251569 Max fold change below threshold 4 2.64526931128348 Max fold change at or above threshold 0.495680239907604 -1.20480471947964 -0.370461181877229 1.07958566144927 338.07063293457 151.034633611391 0.446754668692629 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774606_at SPAC23D3.11.S1 --- 2.64443340190534 --- --- --- --- 1.39957141876221 3.70107340812683 1.79966247081757 0.650894284248352 0.962401986122131 0.904784977436066 0.962401986122131 0.995850026607513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23D3.11 /DEF=1-acyl dihydroxyacetone phosphate reductase (predicted) --- --- --- --- --- --- SPAC23D3.11 // |||1-acyldihydroxyacetone phosphate reductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.53298202386688 2.64443340190534 -1.13340717248967 1.2858668351553 -2.15022846663713 Max fold change below threshold 1 2.64443340190534 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770707_at YGR205W.S1 Protein that binds ATP; crystal structure resembles that of E.coli pantothenate kinase 2.64442831177662 868.081359863281 399.627532958984 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 5524 // ATP binding // inferred from direct assay 404.815979003906 665.655883789063 1070.5068359375 394.439086914063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244140625 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR205W /GEN=ADE3 /DB_XREF=GI:6321644 /SEG=NC_001139:+909216,910088 /DEF=Hypothetical ORF /NOTE=Ygr205wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003437 // YGR205W SGDID:S0003437, Chr VII from 909218-910090, Verified ORF // sgd // 11 // --- /// GENSCAN00000019500 // cdna:Genscan chromosome:SGD1:VII:909218:910090:1 // ensembl // 11 // --- /// GENEFINDER00000021397 // cdna:GeneFinder chromosome:SGD1:VII:909218:910090:1 // ensembl // 11 // --- /// YGR205W // cdna:known chromosome:SGD1:VII:909218:910090:1 gene:YGR205W // ensembl // 11 // --- --- No cerevisiae_gene -1.08978266061384 1.64434191907884 1.44852344626955 2.64442831177662 -1.02630797107616 Max fold change below threshold 4 2.64442831177662 Max fold change at or above threshold -0.72253323553893 0.100321992648555 1.37747980669703 -0.755268563806659 633.854446411133 316.993677441549 0.500104841476398 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771451_at YOR080W.S1 Protein of unknown function, involved in invasive and pseudohyphal growth 2.64401481310246 145.663146972656 377.081069946289 DIA2 1403 // invasive growth (sensu Saccharomyces) // inferred from genetic interaction /// 16567 // protein ubiquitination // inferred from mutant phenotype 19005 // SCF ubiquitin ligase complex // inferred from direct assay --- 360.567474365234 136.371200561523 154.955093383789 393.594665527344 0.00195312988944352 0.00805663969367743 0.00585938012227416 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR080W /GEN=DIA2 /DB_XREF=GI:6324654 /SEG=NC_001147:+474553,476793 /DEF=Protein of unknown function, involved in invasive and pseudohyphal growth /NOTE=Dia2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: invasive growth (sensu Saccharomyces) [goid GO:0001403] [evidence IGI] [pmid 11063681] --- --- --- --- --- --- S0005606 // DIA2 SGDID:S0005606, Chr XV from 474553-476793, Verified ORF // sgd // 11 // --- /// GENSCAN00000017521 // cdna:Genscan chromosome:SGD1:XV:475783:476793:1 // ensembl // 11 // --- /// YOR080W // cdna:known chromosome:SGD1:XV:474553:476793:1 gene:YOR080W // ensembl // 11 // --- GENEFINDER00000022618 // ensembl // 3 // Cross Hyb Matching Probes No cerevisiae_gene 1.053022685002 -2.64401481310246 1.17111546054511 -2.32691592442327 1.09159781042439 Max fold change below threshold 4 2.64401481310246 Max fold change at or above threshold 0.737501256365695 -0.92936122347864 -0.791193032057207 0.983052999170152 261.372108459473 134.501961928286 0.514599521429584 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1770808_at YHR036W.S1 Protein required for cell viability 2.64342664813752 104.149032592773 258.918655395508 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 236.625427246094 89.5146560668945 118.783409118652 281.211883544922 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR036W /GEN=RRM3 /DB_XREF=GI:6321825 /SEG=NC_001140:+180337,181752 /DEF=Protein required for cell viability /NOTE=Yhr036wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001078 // span:300-322,406-428 // numtm:2 S0001078 // YHR036W SGDID:S0001078, Chr VIII from 180337-181752, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016584 // cdna:Genscan chromosome:SGD1:VIII:180385:181752:1 // ensembl // 11 // --- /// GENEFINDER00000020204 // cdna:GeneFinder chromosome:SGD1:VIII:180385:181752:1 // ensembl // 11 // --- /// YHR036W // cdna:known chromosome:SGD1:VIII:180337:181752:1 gene:YHR036W // ensembl // 11 // --- --- No cerevisiae_gene -1.13251774930826 -2.64342664813752 -1.20572209902147 -1.99207472661211 1.1884263108058 Max fold change below threshold 4 2.64342664813752 Max fold change at or above threshold 0.599010993862656 -1.00052497969878 -0.682285716643432 1.08379970247956 181.533843994141 91.970905069206 0.506632278839281 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780147_at YGL144C.S1 Protein with putative serine active lipase domain 2.64319527696663 85.7925567626953 242.454566955566 ROG1 6629 // lipid metabolism // inferred from mutant phenotype --- 16298 // lipase activity // non-traceable author statement 215.343643188477 81.4709548950195 90.1141586303711 269.565490722656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL144C /GEN=ROG1 /DB_XREF=GI:6321294 /SEG=NC_001139:-232453,234510 /DEF=Protein with putative serine active lipase domain /NOTE=Rog1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: lipase activity [goid GO:0016298] [evidence NAS] [pmid 10341423]; go_process: lipid metabolism [goid GO:0006629] [evidence IMP] [pmid 10341423] --- --- --- --- --- --- S0003112 // ROG1 SGDID:S0003112, Chr VII from 234512-232455, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019241 // cdna:Genscan chromosome:SGD1:VII:232455:234512:-1 // ensembl // 11 // --- /// GENEFINDER00000021649 // cdna:GeneFinder chromosome:SGD1:VII:232455:234512:-1 // ensembl // 11 // --- /// YGL144C // cdna:known chromosome:SGD1:VII:232455:234512:-1 gene:YGL144C // ensembl // 11 // --- --- No cerevisiae_gene -1.855922944425 -2.64319527696663 -1.04014912422353 -2.38967601164396 1.25179219006118 Max fold change below threshold 4 2.64319527696663 Max fold change at or above threshold 0.549660051176769 -0.886973136213237 -0.794219987756546 1.13153307279301 164.123561859131 93.1850172114354 0.567773549122808 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772988_at SPCC4G3.02.S1 --- 2.64289372202488 --- --- --- --- 8.94770812988281 3.38557243347168 7.048912525177 8.40853881835938 0.0375977009534836 0.274170011281967 0.0561522990465164 0.111571997404099 P A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4G3.02 /GEN=aph1 /DEF=bis(5-nucleosidyl)-tetraphosphatase (PMID 8554540) --- --- --- --- --- --- SPCC4G3.02 // |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.02866861102632 -2.64289372202488 -1.23018368344898 -1.26937426133801 -1.06412164148499 Max fold change below threshold 4 2.64289372202488 Max fold change at or above threshold PAAMMA No 4 0 PAMA 2 1 1 No No x = 1
1774531_at SPAC227.10.S1 --- 2.64224952388609 --- --- --- --- 1.9662948846817 3.65092420578003 1.70163059234619 1.57418918609619 0.525390625 0.0805663987994194 0.665526986122131 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC227.10 /DEF=prefoldin (subunit 2) (predicted) --- --- --- --- --- --- SPAC227.10 // |||prefoldin |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.64224952388609 1.85675314227908 1.24745246545253 -1.15553569236822 -1.24908422828001 Max fold change below threshold 1 2.64224952388609 Max fold change at or above threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1772894_at YBL097W.S1 Essential protein required for chromosome condensation, likely to function as an intrinsic component of the condensation machinery, may influence multiple aspects of chromosome transmission and dynamics 2.64191693429886 35.7893199920654 12.0609784126282 BRN1 70 // mitotic sister chromatid segregation // inferred from mutant phenotype /// 7076 // mitotic chromosome condensation // inferred from mutant phenotype /// 7076 // mitotic chromosome condensation // inferred from genetic interaction 799 // nuclear condensin complex // inferred from physical interaction /// 799 // nuclear condensin complex // inferred from sequence similarity /// 799 // nuclear condensin complex // traceable author statement /// 5634 // nucleus // inferred from direct assay --- 14.1887722015381 34.0930824279785 37.4855575561523 9.93318462371826 0.014160200022161 0.00122069998178631 0.000732421991415322 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL097W /GEN=BRN1 /DB_XREF=GI:41629672 /SEG=NC_001134:+40828,43092 /DEF=BaRreN, a gene with sequence similarity to Drosophila barren and Xenopus XCAP-H, and a functional homolog of human BRRN1 /NOTE=Brn1p; go_component: nuclear condensin complex [goid GO:0000799] [evidence TAS] [pmid 10811823]; go_component: nuclear condensin complex [goid GO:0000799] [evidence IPI,ISS] [pmid 7698648]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10749931]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitotic chromosome condensation [goid GO:0007076] [evidence IGI] [pmid 10749931]; go_process: mitotic chromosome condensation [goid GO:0007076] [evidence IMP] [pmid 7698648]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence IMP] [pmid 10749931] --- --- --- --- --- --- S0000193 // BRN1 SGDID:S0000193, Chr II from 40828-43092, Verified ORF // sgd // 11 // --- /// GENSCAN00000021063 // cdna:Genscan chromosome:SGD1:II:40828:43092:1 // ensembl // 11 // --- /// GENEFINDER00000022274 // cdna:GeneFinder chromosome:SGD1:II:40828:43092:1 // ensembl // 11 // --- /// YBL097W // cdna:known chromosome:SGD1:II:40828:43092:1 gene:YBL097W // ensembl // 11 // --- --- No cerevisiae_gene 1.11719265337035 2.4028211845055 1.11476988246947 2.64191693429886 -1.42842127062236 Max fold change below threshold 4 2.64191693429886 Max fold change at or above threshold -0.701540642791396 0.732635805944775 0.977075722545705 -1.00817088569908 23.9251492023468 13.8785644151252 0.580082669401445 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1770087_at YPL262W.S1 Fumarase, converts fumaric acid to L-malic acid in the TCA cycle; cytosolic and mitochondrial localization determined by the N-terminal mitochondrial targeting sequence and protein conformation 2.64186240634225 5432.99438476563 2352.5703125 FUM1 6099 // tricarboxylic acid cycle // traceable author statement /// 6106 // fumarate metabolism // traceable author statement 5759 // mitochondrial matrix // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 4333 // fumarate hydratase activity // traceable author statement 2328.13720703125 6150.6181640625 4715.37060546875 2377.00341796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL262W /GEN=FUM1 /DB_XREF=GI:6324993 /SEG=NC_001148:+47336,48802 /DEF=Fumarase, converts fumaric acid to L-malic acid in the TCA cycle; cytosolic and mitochondrial localization determined by the N-terminal mitochondrial targeting sequence and protein conformation /NOTE=Fum1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 11585823]; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 11585823]; go_function: fumarate hydratase activity [goid GO:0004333] [evidence TAS] [pmid 9175438]; go_process: fumarate metabolism [goid GO:0006106] [evidence TAS] [pmid 9175438]; go_process: tricarboxylic acid cycle [goid GO:0006099] [evidence TAS] [pmid 9175438] --- --- --- --- --- --- S0006183 // FUM1 SGDID:S0006183, Chr XVI from 47336-48802, Verified ORF // sgd // 11 // --- /// GENSCAN00000016983 // cdna:Genscan chromosome:SGD1:XVI:47405:48802:1 // ensembl // 11 // --- /// GENEFINDER00000020827 // cdna:GeneFinder chromosome:SGD1:XVI:47405:48802:1 // ensembl // 11 // --- /// YPL262W // cdna:known chromosome:SGD1:XVI:47336:48802:1 gene:YPL262W // ensembl // 11 // --- --- No cerevisiae_gene -1.36065948262393 2.64186240634225 1.18870014314103 2.02538346590045 1.02098940336932 Max fold change below threshold 4 2.64186240634225 Max fold change at or above threshold -0.835535713493299 1.20570627092144 0.439270124459726 -0.809440681887867 3892.78234863281 1872.62509110463 0.481050550324838 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778979_at YBR185C.S1 Protein involved in assembly of mitochondrial respiratory complexes; may act as a receptor for proteins destined for export from the mitochondrial matrix to the inner membrane 2.64147398592769 311.776374816895 611.09765625 MBA1 7007 // inner mitochondrial membrane organization and biogenesis // inferred from direct assay /// 9060 // aerobic respiration // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay --- 582.07666015625 220.360549926758 403.192199707031 640.11865234375 0.000244141003349796 0.00122069998178631 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR185C /GEN=MBA1 /DB_XREF=GI:6319662 /SEG=NC_001134:-599080,599916 /DEF=involved in assembly of mitochondrial respiratory complexes /NOTE=Mba1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 11381092]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 8690083]; go_process: inner mitochondrial membrane organization and biogenesis [goid GO:0007007] [evidence IDA] [pmid 11381092] --- --- --- --- --- --- S0000389 // MBA1 SGDID:S0000389, Chr II from 599954-599118, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000021289 // cdna:Genscan chromosome:SGD1:II:599118:599954:-1 // ensembl // 10 // --- /// YBR185C // cdna:known chromosome:SGD1:II:599118:599954:-1 gene:YBR185C // ensembl // 10 // --- --- No cerevisiae_gene -1.30826003124023 -2.64147398592769 1.08524513188149 -1.44367043950553 1.09971537455551 Max fold change below threshold 4 2.64147398592769 Max fold change at or above threshold 0.635852154388178 -1.27063529163718 -0.306989395906833 0.941772533155838 461.437015533447 189.729080557859 0.411170049586337 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770807_at SPCC584.13.S1 --- 2.64106854656299 --- --- --- --- 5.89484262466431 3.36732983589172 7.04638528823853 2.23199152946472 0.194580003619194 0.24609400331974 0.194580003619194 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC584.13 /DEF=amino acid permease family --- --- --- --- --- --- SPCC584.13 // |||amino acid permease family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.47098948778255 -1.75059851928739 1.08804784450504 1.19534748201014 -2.64106854656299 Max fold change below threshold 3 2.64106854656299 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
RPTR-Sc-AJ002682-1_s_at AFFX-Sc-AJ002682-1 --- 2.64093751732667 --- --- --- --- 10.390923500061 9.84214782714844 9.77440357208252 6.62411022186279 0.219482004642487 0.0952147990465164 0.030273400247097 0.0805663987994194 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL AJ002682 /FEA=CDS_1 /DB_XREF=CAA05684.1 GI:2623979 REMTREMBL:CAA05684 /GEN=kanamycin resistance gene --- --- --- --- --- --- AFFX-Sc-AJ002682-1 // --- // affx // --- // --- --- No No -2.64093751732667 -1.05575771493686 -1.2940046334262 -1.06307494093444 -1.56865196260864 Max fold change below threshold 4 2.64093751732667 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1779527_at SPBC18H10.10c.S1 --- 2.64042509346417 --- --- --- --- 5.78252744674683 13.2802724838257 15.2683305740356 7.56243944168091 0.432372987270355 0.398925989866257 0.129638999700546 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18H10.10c /GEN=cwc16 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC18H10.10c // |cwc16||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.93734871882112 2.29662074346002 1.75268064497269 2.64042509346417 1.30780865483577 Max fold change below threshold 4 2.64042509346417 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770524_at SPBC12D12.07c.S1 --- 2.63978549999118 --- --- --- --- 0.597303688526154 0.319893419742584 0.70431649684906 0.448836863040924 0.953857004642487 0.994140982627869 0.976073980331421 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12D12.07c /DEF=thioredoxin (ISS) --- --- --- --- --- --- SPBC12D12.07c // |trx2||thioredoxin Trx2|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.08528560706901 -1.86719592108771 -2.63978549999118 1.17915979823758 -1.33078126533402 Max fold change below threshold 0 2.63978549999118 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777567_at YBR034C.S1 Nuclear SAM-dependent mono- and asymmetric arginine dimethylating methyltransferase that modifies hnRNPs, including Npl3p and Hrp1p, thus facilitating nuclear export of these proteins; required for viability of npl3 mutants 2.63889857662233 310.625701904297 633.953033447266 HMT1 6406 // mRNA-nucleus export // inferred from genetic interaction /// 18195 // peptidyl-arginine modification // inferred from direct assay /// 18195 // peptidyl-arginine modification // inferred from sequence similarity 5634 // nucleus // inferred from direct assay 16274 // protein-arginine N-methyltransferase activity // inferred from direct assay /// 16274 // protein-arginine N-methyltransferase activity // inferred from sequence similarity /// 16274 // protein-arginine N-methyltransferase activity // inferred from physical interaction 564.397521972656 269.850524902344 351.40087890625 703.508544921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR034C /GEN=HMT1 /DB_XREF=GI:6319508 /SEG=NC_001134:-304892,305938 /DEF=Nuclear SAM-dependent mono- and asymmetric arginine dimethylating methyltransferase that modifies hnRNPs, including Npl3p and Hrp1p, thus facilitating nuclear export of these proteins; required for viability of npl3 mutants /NOTE=Hmt1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8668183]; go_function: protein-arginine N-methyltransferase activity [goid GO:0016274] [evidence IDA,IPI,ISS] [pmid 8668183]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IGI] [pmid 10952997]; go_process: peptidyl-arginine modification [goid GO:0018195] [evidence IDA,ISS] [pmid 8668183] --- --- --- --- --- --- S0000238 // HMT1 SGDID:S0000238, Chr II from 305976-304930, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021166 // cdna:Genscan chromosome:SGD1:II:304930:305976:-1 // ensembl // 11 // --- /// GENEFINDER00000022388 // cdna:GeneFinder chromosome:SGD1:II:304930:305976:-1 // ensembl // 11 // --- /// YBR034C // cdna:known chromosome:SGD1:II:304930:305976:-1 gene:YBR034C // ensembl // 11 // --- --- No cerevisiae_gene 2.63889857662233 -2.09151908145039 1.08691794790771 -1.60613577213969 1.24647702644584 Max fold change below threshold 4 2.63889857662233 Max fold change at or above threshold 0.465331727270103 -1.02272396068977 -0.610730393151597 1.16812262657126 472.289367675781 197.9408428418 0.41910925036467 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777752_at YDL080C.S1 Probable decarboxylase, required for expression of enzymes involved in thiamine biosynthesis; may have a role in catabolism of amino acids to long-chain and complex alcohols 2.63862835468884 264.966354370117 240.046997070313 THI3 9228 // thiamin biosynthesis // traceable author statement 5634 // nucleus // inferred from direct assay 16563 // transcriptional activator activity // inferred from mutant phenotype /// 16831 // carboxy-lyase activity // inferred from mutant phenotype /// 16831 // carboxy-lyase activity // inferred from sequence similarity 211.574432373047 244.196929931641 285.735778808594 268.519561767578 0.000732421991415322 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL080C /GEN=THI3 /DB_XREF=GI:6320123 /SEG=NC_001136:-310642,312471 /DEF=Positive regulatory factor with thiamin pyrophosphate-binding motif for thiamin metabolism /NOTE=Thi3p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: carboxy-lyase activity [goid GO:0016831] [evidence IMP,ISS] [pmid 10753893]; go_function: transcriptional activator activity [goid GO:0016563] [evidence IMP] [pmid 8394343]; go_process: thiamin biosynthesis [goid GO:0009228] [evidence TAS] [pmid 9655908] --- --- --- --- --- --- S0002238 // THI3 SGDID:S0002238, Chr IV from 312471-310642, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023570 // cdna:GeneFinder chromosome:SGD1:IV:310642:312471:-1 // ensembl // 11 // --- /// GENSCAN00000025041 // cdna:Genscan chromosome:SGD1:IV:310642:312471:-1 // ensembl // 11 // --- /// YDL080C // cdna:known chromosome:SGD1:IV:310642:312471:-1 gene:YDL080C // ensembl // 11 // --- --- No cerevisiae_gene 2.63862835468884 1.15418922406028 1.07127148334363 1.35052130639673 1.26914938991364 Max fold change below threshold 4 2.63862835468884 Max fold change at or above threshold -1.272299457402 -0.258292343477995 1.03286227121057 0.497729529669427 252.506675720215 32.1718626138145 0.127409948755026 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773340_at YOL041C.S1 Nucleolar protein, required for pre-25S rRNA processing; contains an RNA recognition motif (RRM) and has similarity to Nop13p, Nsr1p, and putative orthologs in Drosophila and S. pombe 2.63676627470027 243.26953125 378.452011108398 NOP12 16072 // rRNA metabolism // inferred from mutant phenotype 5730 // nucleolus // inferred from direct assay 3723 // RNA binding // inferred from sequence similarity 367.711242675781 245.842010498047 240.697052001953 389.192779541016 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL041C /GEN=NOP12 /DB_XREF=GI:6324532 /SEG=NC_001147:-251265,252644 /DEF=Nucleolar protein, required for pre-25S rRNA processing; contains an RNA recognition motif (RRM) and has similarity to Nop13p, Nsr1p, and putative orthologs in Drosophila and S. pombe /NOTE=Nop12p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11452019]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 11452019]; go_process: rRNA metabolism [goid GO:0016072] [evidence IMP] [pmid 11452019] --- --- --- --- --- --- S0005401 // NOP12 SGDID:S0005401, Chr XV from 252644-251265, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017435 // cdna:Genscan chromosome:SGD1:XV:251265:252644:-1 // ensembl // 11 // --- /// GENEFINDER00000022695 // cdna:GeneFinder chromosome:SGD1:XV:251265:252644:-1 // ensembl // 11 // --- /// YOL041C // cdna:known chromosome:SGD1:XV:251265:252644:-1 gene:YOL041C // ensembl // 11 // --- --- No cerevisiae_gene 2.63676627470027 -1.49572175207501 -1.34703167913419 -1.52769317121839 1.05841958137836 Max fold change below threshold 4 2.63676627470027 Max fold change at or above threshold 0.723593296554833 -0.827559352467523 -0.893044429034568 0.997010484947258 310.860771179199 78.5668852479121 0.252739787493551 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769951_at YJL082W.S1 Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus 2.63605998794599 1247.04913330078 565.354431152344 IML2 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 534.803894042969 1084.32312011719 1409.77514648438 595.904968261719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL082W /GEN=IML2 /DB_XREF=GI:6322379 /SEG=NC_001142:+281101,283296 /DEF=Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus /NOTE=Iml2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003618 // IML2 SGDID:S0003618, Chr X from 281101-283296, Verified ORF // sgd // 10 // --- /// GENSCAN00000024075 // cdna:Genscan chromosome:SGD1:X:281101:283296:1 // ensembl // 10 // --- /// GENEFINDER00000024502 // cdna:GeneFinder chromosome:SGD1:X:281101:283296:1 // ensembl // 10 // --- /// YJL082W // cdna:known chromosome:SGD1:X:281101:283296:1 gene:YJL082W // ensembl // 10 // --- --- No cerevisiae_gene -1.2676605628024 2.02751537936646 1.2171914742679 2.63605998794599 1.11424949387867 Max fold change below threshold 4 2.63605998794599 Max fold change at or above threshold -0.892468987052533 0.42802550864561 1.21008660685664 -0.745643128449715 906.201782226563 416.146548027592 0.459220624136391 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775568_at YMR259C.S1 Hypothetical protein 2.63544859353265 142.760395050049 354.736373901367 --- --- 5737 // cytoplasm // inferred from direct assay --- 334.170043945313 158.722625732422 126.798164367676 375.302703857422 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR259C /GEN=PET111 /DB_XREF=GI:6323915 /SEG=NC_001145:-784620,788882 /DEF=Hypothetical ORF /NOTE=Ymr259cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004872 // YMR259C SGDID:S0004872, Chr XIII from 788882-784620, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018931 // cdna:Genscan chromosome:SGD1:XIII:784620:788882:-1 // ensembl // 11 // --- /// YMR259C // cdna:known chromosome:SGD1:XIII:784620:788882:-1 gene:YMR259C // ensembl // 11 // --- --- No cerevisiae_gene 1.30238955244544 -2.10537119332101 -1.52080940883536 -2.63544859353265 1.12308901009344 Max fold change below threshold 4 2.63544859353265 Max fold change at or above threshold 0.687682693075881 -0.724747758392725 -0.981753998995172 1.01881906431202 248.748384475708 124.216677734798 0.499366771754565 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773997_at YMR168C.S1 Essential kinetochore protein, component of the CBF3 complex that binds the CDEIII region of the centromere; contains an N-terminal Zn2Cys6 type zinc finger domain, a C-terminal acidic domain, and a putative coiled coil dimerization domain 2.63544033945324 299.813842773438 145.173568725586 CEP3 7094 // mitotic spindle checkpoint // inferred from mutant phenotype 778 // condensed nuclear chromosome kinetochore // traceable author statement /// 778 // condensed nuclear chromosome kinetochore // inferred from direct assay 8301 // DNA bending activity // inferred from direct assay /// 19237 // centromeric DNA binding // inferred from direct assay 133.990173339844 246.504577636719 353.123107910156 156.356964111328 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR168C /GEN=CEP3 /DB_XREF=GI:6323820 /SEG=NC_001145:-597331,599157 /DEF=Cbf3 kinetochore complex binds CDE III centromere element; Cep3p contains an N-terminal Zn2Cys6 type zinc finger domain, a C-terminal acidic domain and a putative coiled coil dimerization domain /NOTE=Cep3p; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence TAS] [pmid 10097110]; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IDA] [pmid 10352012]; go_function: DNA bending activity [goid GO:0008301] [evidence IDA] [pmid 10097110]; go_function: centromeric DNA binding [goid GO:0019237] [evidence IDA] [pmid 10352012]; go_process: mitotic spindle checkpoint [goid GO:0007094] [evidence IMP] [pmid 11290706] --- --- --- --- --- --- S0004778 // CEP3 SGDID:S0004778, Chr XIII from 599157-597331, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018854 // cdna:Genscan chromosome:SGD1:XIII:597331:599157:-1 // ensembl // 11 // --- /// YMR168C // cdna:known chromosome:SGD1:XIII:597331:599157:-1 gene:YMR168C // ensembl // 11 // --- --- No cerevisiae_gene 1.38302061909675 1.83972131308093 1.56976795829262 2.63544033945324 1.16692859046279 Max fold change below threshold 4 2.63544033945324 Max fold change at or above threshold -0.887293304526094 0.240721305481196 1.30962675449918 -0.663054755454282 222.493705749512 99.7455204025662 0.448307155775732 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771010_at SPAC25B8.15c.S1 --- 2.63531286190912 --- --- --- --- 1.00205063819885 0.666065454483032 2.05032992362976 0.57165789604187 0.633789002895355 0.850341975688934 0.567627012729645 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25B8.15c /DEF=conserved ACR protein --- --- --- --- --- --- SPAC25B8.15c // |||conserved ACR protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.70267041486781 -1.50443268218526 -2.63531286190912 2.04613404300121 -1.75288515235598 Max fold change below threshold 0 2.63531286190912 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770256_at YJR088C.S1 Hypothetical protein 2.63428793938931 482.531494140625 897.465118408203 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 840.684020996094 319.131408691406 645.931579589844 954.246215820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR088C /GEN=STE18 /DB_XREF=GI:6322547 /SEG=NC_001142:-586409,587287 /DEF=Hypothetical ORF /NOTE=Yjr088cp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003848 // YJR088C SGDID:S0003848, Chr X from 587287-586409, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024200 // cdna:Genscan chromosome:SGD1:X:586409:587287:-1 // ensembl // 11 // --- /// YJR088C // cdna:known chromosome:SGD1:X:586409:587287:-1 gene:YJR088C // ensembl // 11 // --- YJR087W // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene 1.3118907848521 -2.63428793938931 1.1035805237594 -1.30150630122453 1.13508308947 Max fold change below threshold 4 2.63428793938931 Max fold change at or above threshold 0.541841854928978 -1.33357835604586 -0.158456937816021 0.950193438932898 689.998306274414 278.099067746309 0.40304311650833 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779856_at YJL074C.S1 Subunit of the multiprotein cohesin complex required for sister chromatid cohesion in mitotic cells; also required, with Rec8p, for cohesion and recombination during meiosis; phylogenetically conserved SMC chromosomal ATPase family member 2.63415032903666 207.326393127441 151.816352844238 SMC3 7064 // mitotic sister chromatid cohesion // traceable author statement /// 7064 // mitotic sister chromatid cohesion // inferred from mutant phenotype /// 7130 // synaptonemal complex formation // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype 798 // nuclear cohesin complex // traceable author statement /// 5634 // nucleus // inferred from direct assay 16887 // ATPase activity // inferred from sequence similarity 126.930633544922 189.110214233398 225.542572021484 176.702072143555 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL074C /GEN=SMC3 /DB_XREF=GI:6322387 /SEG=NC_001142:-299073,302765 /DEF=involved in sister chromatid cohesion /NOTE=Smc3p; go_component: nuclear cohesin complex [goid GO:0000798] [evidence TAS] [pmid 9887095]; go_function: ATPase activity [goid GO:0016887] [evidence ISS] [pmid 9887095]; go_process: mitotic sister chromatid cohesion [goid GO:0007064] [evidence IMP] [pmid 9335333]; go_process: mitotic sister chromatid cohesion [goid GO:0007064] [evidence TAS] [pmid 9887095]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 10412984]; go_process: synaptonemal complex formation [goid GO:0007130] [evidence IMP] [pmid 10412984] --- --- --- --- scop // a.2.5.Prefoldin // All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin // 0.649999976158142 /// scop // a.2.5.Prefoldin // All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin // 6.80000019073486 /// scop // a.140.2.SAP domain // All alpha proteins; LEM/SAP HeH motif; SAP domain; SAP domain // 8.0 --- S0003610 // SMC3 SGDID:S0003610, Chr X from 302765-299073, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024081 // cdna:Genscan chromosome:SGD1:X:299073:302765:-1 // ensembl // 11 // --- /// GENEFINDER00000024475 // cdna:GeneFinder chromosome:SGD1:X:299073:302546:-1 // ensembl // 11 // --- /// YJL074C // cdna:known chromosome:SGD1:X:299073:302765:-1 gene:YJL074C // ensembl // 11 // --- --- No cerevisiae_gene 2.63415032903666 1.48987056120279 -1.11263269191801 1.77689629148241 1.39211526176633 Max fold change below threshold 4 2.63415032903666 Max fold change at or above threshold -1.29154667666985 0.234036581617417 1.12790872559178 -0.0703986305393504 179.57137298584 40.7579070828844 0.226973299837154 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772091_at YDR505C.S1 Asn and gln rich protein of unknown function; high-copy suppressor of POL1 (DNA polymerase alpha) and partial suppressor of CDC2 (polymerase delta) and CDC6 (pre-RC loading factor) mutations; overexpression results in growth inhibition 2.63412256760755 860.312347412109 401.371688842773 PSP1 --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 346.338073730469 808.327758789063 912.296936035156 456.405303955078 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR505C /GEN=PSP1 /DB_XREF=GI:6320713 /SEG=NC_001136:-1456683,1459208 /DEF=high-copy suppressor of cdc17 DNA polymerase alpha mutations /NOTE=Psp1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002913 // PSP1 SGDID:S0002913, Chr IV from 1459210-1456685, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023835 // cdna:GeneFinder chromosome:SGD1:IV:1456685:1459210:-1 // ensembl // 11 // --- /// GENSCAN00000025494 // cdna:Genscan chromosome:SGD1:IV:1456685:1459210:-1 // ensembl // 11 // --- /// YDR505C // cdna:known chromosome:SGD1:IV:1456685:1459210:-1 gene:YDR505C // ensembl // 11 // --- --- No cerevisiae_gene -1.00414192398262 2.33392693469251 1.84745725673696 2.63412256760755 1.3178028596136 Max fold change below threshold 4 2.63412256760755 Max fold change at or above threshold -1.04564837805193 0.652320224394557 1.03444217277458 -0.641114019117202 630.842018127441 272.083761968828 0.431302535580092 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776292_at SPAC31G5.16c.S1 --- 2.63384300781865 --- --- --- --- 2.2951295375824 2.75357508659363 5.44550895690918 1.88233149051666 0.657470703125 0.828612983226776 0.753906011581421 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31G5.16c /GEN=dpm1 /DEF=dolichol-phosphate mannosyltransferase (catalytic subunit) --- --- --- --- --- --- AF007873 // Schizosaccharomyces pombe dolichol monophosphate mannose synthase (dpm1+) mRNA, complete cds. // gb // 11 // --- /// SPAC31G5.16c // |dpm1||dolichol-phosphate mannosyltransferase catalytic subunit Dpm1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.63384300781865 1.19974713474959 2.07164266115797 2.37263686765379 -1.21930146158923 Max fold change below threshold 2 2.63384300781865 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771593_at SPACUNK12.02c.S1 --- 2.63371062266906 --- --- --- --- 9.02060317993164 3.42505478858948 11.1078853607178 5.9523777961731 0.0805663987994194 0.601073980331421 0.194580003619194 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPACUNK12.02c /GEN=cmk1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- AF073893 // Schizosaccharomyces pombe calmodulin kinase I homolog (cmk1) mRNA, complete cds. // gb // 10 // --- /// SPACUNK12.02c // |cmk1||serine/threonine protein kinase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.48078926788053 -2.63371062266906 -1.19798118105303 1.2313905333326 -1.51546213779158 Max fold change below threshold 4 2.63371062266906 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774662_at SPCC1020.07.S1 --- 2.6334907684147 --- --- --- --- 9.36162662506104 6.60505962371826 6.8509373664856 4.93416261672974 0.111571997404099 0.334473013877869 0.149657994508743 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1020.07 /DEF=haloacid dehalogenase-like hydrolase --- --- --- --- --- --- SPCC1020.07 // |||haloacid dehalogenase-like hydrolase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.78752634592642 -1.41734172867178 -2.6334907684147 -1.36647383040715 -1.89730808492602 Max fold change below threshold 4 2.6334907684147 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772031_at YJR045C.S1 Mitochondrial matrix ATPase that is a subunit of the presequence translocase-associated protein import motor (PAM); involved in protein translocation into the matrix and protein folding; member of the heat shock protein 70 (HSP70) family 2.63318825891314 5231.44482421875 2365.96044921875 SSC1 6457 // protein folding // inferred from direct assay /// 30150 // mitochondrial matrix protein import // inferred from direct assay 1405 // presequence translocase-associated import motor // inferred from physical interaction /// 5739 // mitochondrion // inferred from direct assay /// 5743 // mitochondrial inner membrane // inferred from direct assay /// 42645 // mitochondrial nucleoid // inferred from direct assay 8565 // protein transporter activity // inferred from mutant phenotype /// 16887 // ATPase activity // inferred from direct assay /// 30234 // enzyme regulator activity // inferred from direct assay 2342.88427734375 6169.25537109375 4293.63427734375 2389.03662109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR045C /GEN=SSC1 /DB_XREF=GI:6322505 /SEG=NC_001142:-519552,521516 /DEF=Nuclear-encoded mitochondrial protein; member of the heat shock protein 70 (HSP70) family; most similar to E. coli DnaK protein; acts as a chaperone for protein import across the inner membrane; subunit of Endo.SceI endonuclease /NOTE=Ssc1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 7935837]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11914276]; go_component: presequence translocase-associated import motor [goid GO:0001405] [evidence IPI] [pmid 14638855]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 9860955]; go_function: enzyme regulator activity [goid GO:0030234] [evidence IDA] [pmid 10464305]; go_function: heat shock protein activity [goid GO:0003773] [evidence IDA] [pmid 3035571]; go_function: protein transporter activity [goid GO:0008565] [evidence IMP] [pmid 10779357]; go_process: mitochondrial matrix protein import [goid GO:0030150] [evidence IDA] [pmid 8654364]; go_process: protein folding [goid GO:0006457] [evidence IDA] [pmid 8654364] --- --- --- --- scop // a.2.9.C-terminal UvrC-binding domain of UvrB // All alpha proteins; Long alpha-hairpin; C-terminal UvrC-binding domain of UvrB; C-terminal UvrC-binding domain of UvrB // 7.09999990463257 --- S0003806 // SSC1 SGDID:S0003806, Chr X from 521516-519552, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024168 // cdna:Genscan chromosome:SGD1:X:519552:521516:-1 // ensembl // 11 // --- /// GENEFINDER00000024289 // cdna:GeneFinder chromosome:SGD1:X:519552:521516:-1 // ensembl // 11 // --- /// YJR045C // cdna:known chromosome:SGD1:X:519552:521516:-1 gene:YJR045C // ensembl // 11 // --- --- No cerevisiae_gene 1.59430222871907 2.63318825891314 1.12635021227633 1.83262755180195 1.01969894296372 Max fold change below threshold 4 2.63318825891314 Max fold change at or above threshold -0.798541562996723 1.30028919712666 0.271478569655417 -0.773226203785352 3798.70263671875 1823.09653853418 0.479926099219216 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774461_at YBR090C.S1 High-mobility group non-histone chromatin protein, functionally redundant with Nhp6Ap; homologous to mammalian high mobility group proteins 1 and 2; acts to recruit transcription factor Rcs1p to certain promoters /// Hypothetical protein 2.63300018338222 22.6787924766541 37.8332195281982 NHP6B 6325 // establishment and/or maintenance of chromatin architecture // inferred from sequence similarity /// 6338 // chromatin remodeling // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence similarity /// 6359 // regulation of transcription from RNA polymerase III promoter // inferred from mutant phenotype /// 6359 // regulation of transcription from RNA polymerase III promoter // inferred from genetic interaction /// 6359 // regulation of transcription from RNA polymerase III promoter // inferred from direct assay /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from physical interaction 790 // nuclear chromatin // inferred from sequence similarity /// 35101 // FACT complex // inferred from genetic interaction /// 35101 // FACT complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3682 // chromatin binding // inferred from sequence similarity /// 3682 // chromatin binding // inferred from direct assay 37.4773216247559 14.2336950302124 31.1238899230957 38.1891174316406 0.018554700538516 0.06494140625 0.0461426004767418 0.00195312988944352 P M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR090C /GEN=NHP6B /DB_XREF=GI:6319566 /SEG=NC_001134:-426290,427015 /DEF=Hypothetical ORF /NOTE=Ybr090cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000294 // span:10-27 // numtm:1 S0000294 // YBR090C SGDID:S0000294, Chr II from 427052-426868,426510-426327, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YBR090C // cdna:known chromosome:SGD1:II:426327:427052:-1 gene:YBR090C // ensembl // 11 // --- --- No cerevisiae_gene 1.62179500033335 -2.63300018338222 -1.07979649680297 -1.20413360018169 1.01899270748352 Max fold change below threshold 4 2.63300018338222 Max fold change at or above threshold 0.648015005445361 -1.43778481303338 0.0778807952722032 0.711889012315816 30.2560060024261 11.1437475392514 0.368315221062483 PPMPPP Called_P_>2EXP 3 0 PMPP 0 3 1 Yes Yes 2 < x = 3
1775998_at SPAC18B11.10.S1 --- 2.63236333561824 --- --- --- --- 2.51349115371704 3.32130265235901 5.17472982406616 4.12025260925293 0.71875 0.689208984375 0.432372987270355 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18B11.10 /GEN=tup11 /DEF=transcriptional co-repressor activity (PMID 10567571) --- --- --- --- --- --- SPAC18B11.10 // |tup11||transcriptional co-repressor Tup11|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.11857360780987 1.32139022946126 -2.63236333561824 2.05878179297094 1.63925486793926 Max fold change below threshold 4 2.63236333561824 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770634_at YJR074W.S1 Conserved nuclear protein that interacts with GTP-Gsp1p, which is a Ran homolog of the Ras GTPase family, and stimulates nucleotide release, involved in nuclear protein import, nucleotide release is inhibited by Yrb1p 2.63206762997974 1484.42578125 559.508575439453 MOG1 6606 // protein-nucleus import // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 8536 // Ran GTPase binding // inferred from physical interaction 564.956665039063 1487.00415039063 1481.84741210938 554.060485839844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR074W /GEN=MOG1 /DB_XREF=GI:6322534 /SEG=NC_001142:+573009,573665 /DEF=Required for nuclear-protein import /NOTE=Mog1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9860978]; go_function: RAN protein binding [goid GO:0008536] [evidence IPI] [pmid 11509570]; go_process: protein-nucleus import [goid GO:0006606] [evidence IMP] [pmid 9860978] --- --- --- --- --- --- S0003835 // MOG1 SGDID:S0003835, Chr X from 573009-573665, Verified ORF // sgd // 11 // --- /// GENSCAN00000024192 // cdna:Genscan chromosome:SGD1:X:573009:573665:1 // ensembl // 11 // --- /// GENEFINDER00000024489 // cdna:GeneFinder chromosome:SGD1:X:573009:573665:1 // ensembl // 11 // --- /// YJR074W // cdna:known chromosome:SGD1:X:573009:573665:1 gene:YJR074W // ensembl // 11 // --- --- No cerevisiae_gene -1.88397502294353 2.63206762997974 1.44640885887914 2.62293995948683 -1.0196660463572 Max fold change below threshold 4 2.63206762997974 Max fold change at or above threshold -0.855786669421551 0.870816819040802 0.861160437512795 -0.876190587132046 1021.96717834473 534.02387491566 0.522545034939983 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778062_at SPBC713.02c.S1 --- 2.6317779428671 --- --- --- --- 0.301592767238617 0.616676449775696 0.44491446018219 0.5716353058815 0.828612983226776 0.962401986122131 0.953857004642487 0.774169921875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC713.02c /GEN=ubp21 /DEF=ubiquitin C-terminal hydrolase activity --- --- --- --- --- --- SPBC713.02c // |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase activity|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.6317779428671 2.04473222425718 -1.06742782017406 1.47521594849845 1.89538798000825 Max fold change below threshold 0 2.6317779428671 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776298_at YHR192W.S1 Hypothetical protein 2.63171371830938 270.638687133789 686.732269287109 --- --- 5737 // cytoplasm // inferred from direct assay --- 664.049926757813 252.326049804688 288.951324462891 709.414611816406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR192W /GEN=CTF8 /DB_XREF=GI:6321986 /SEG=NC_001140:+486824,487660 /DEF=Hypothetical ORF /NOTE=Yhr192wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001235 // span:54-71,81-103 // numtm:2 S0001235 // YHR192W SGDID:S0001235, Chr VIII from 486825-487661, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000016714 // cdna:Genscan chromosome:SGD1:VIII:486825:487661:1 // ensembl // 10 // --- /// YHR192W // cdna:known chromosome:SGD1:VIII:486825:487661:1 gene:YHR192W // ensembl // 10 // --- --- No cerevisiae_gene -1.173580477378 -2.63171371830938 1.01404622183104 -2.29813768112039 1.06831517214388 Max fold change below threshold 4 2.63171371830938 Max fold change at or above threshold 0.767846980207384 -0.937663100475402 -0.785947888815591 0.955764009083609 478.685478210449 241.408058279137 0.504314564088372 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778003_at YNL078W.S1 Protein localized in the bud neck at G2/M phase; physically interacts with septins; possibly involved in a mitotic signaling network 2.63167094163647 571.641265869141 387.140350341797 NIS1 7088 // regulation of mitosis // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5935 // bud neck // inferred from direct assay --- 388.617034912109 536.615356445313 606.667175292969 385.663665771484 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL078W /GEN=NIS1 /DB_XREF=GI:6324251 /SEG=NC_001146:+479767,480990 /DEF=Nis1p /NOTE=go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 11817649]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11817649]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: regulation of mitosis [goid GO:0007088] [evidence IPI] [pmid 11817649] --- --- --- --- --- --- S0005022 // NIS1 SGDID:S0005022, Chr XIV from 479767-480990, Verified ORF // sgd // 10 // --- /// GENSCAN00000019969 // cdna:Genscan chromosome:SGD1:XIV:479767:480990:1 // ensembl // 10 // --- /// YNL078W // cdna:known chromosome:SGD1:XIV:479767:480990:1 gene:YNL078W // ensembl // 10 // --- --- No cerevisiae_gene 2.63167094163647 1.38083333523111 -1.34760715179186 1.56109259448746 -1.00765788795457 Max fold change below threshold 4 2.63167094163647 Max fold change at or above threshold -0.822968182920545 0.518806048365689 1.15390599011354 -0.849743855558681 479.390808105469 110.30046492347 0.230084647136587 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779168_at YLR315W.S1 Non-essential kinetochore protein, subunit of the Ctf19 central kinetochore complex (Ctf19p-Mcm21p-Okp1p-Mcm22p-Mcm16p-Ctf3p-Chl4p-Mcm19p-Nkp1p-Nkp2p-Ame1p-Mtw1p) 2.63089129043567 40.3669128417969 86.6716079711914 NKP2 --- 776 // kinetochore // inferred from direct assay /// 5816 // spindle pole body // inferred from direct assay --- 78.2391586303711 29.7386512756348 50.995174407959 95.1040573120117 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR315W /GEN=NKP2 /DB_XREF=GI:6323347 /SEG=NC_001144:+764808,765269 /DEF=Nkp2p /NOTE=go_component: kinetochore [goid GO:0000776] [evidence IDA] [pmid 12408861]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004307 // NKP2 SGDID:S0004307, Chr XII from 764808-765269, Verified ORF // sgd // 11 // --- /// YLR315W // cdna:known chromosome:SGD1:XII:764808:765269:1 gene:YLR315W // ensembl // 11 // --- --- No cerevisiae_gene 1.73831967994424 -2.63089129043567 1.67265293887457 -1.53424631916074 1.21555572652968 Max fold change below threshold 4 2.63089129043567 Max fold change at or above threshold 0.508666802580172 -1.167336497472 -0.432787420349166 1.09145711524099 63.5192604064941 28.938193232213 0.455581394478176 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777181_at YOR281C.S1 Essential protein with similarity to phosducins, which are GTPase inhibitors; lethality of null mutation is functionally complemented by expression of mouse phosducin-like protein MgcPhLP 2.6300709810298 286.303596496582 611.939300537109 PLP2 7329 // positive regulation of transcription from RNA polymerase II promoter by pheromones // inferred from physical interaction /// 7329 // positive regulation of transcription from RNA polymerase II promoter by pheromones // inferred from mutant phenotype 5737 // cytoplasm // inferred from physical interaction 5095 // GTPase inhibitor activity // inferred from sequence similarity 586.752197265625 223.093673706055 349.513519287109 637.126403808594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR281C /GEN=PLP2 /DB_XREF=GI:6324856 /SEG=NC_001147:-846266,847126 /DEF=Essential protein with similarity to phosducins, which are GTPase inhibitors; lethality of null mutation is functionally complemented by expression of mouse phosducin-like protein MgcPhLP /NOTE=Plp2p; go_component: cytoplasm [goid GO:0005737] [evidence IPI] [pmid 10749875]; go_function: GTPase inhibitor activity [goid GO:0005095] [evidence ISS] [pmid 10749875]; go_process: positive regulation of transcription from Pol II promoter by pheromones [goid GO:0007329] [evidence IMP,IPI] [pmid 10749875] --- --- --- --- --- --- S0005807 // PLP2 SGDID:S0005807, Chr XV from 847126-846266, reverse complement, Verified ORF // sgd // 11 // --- /// AF110514 // Saccharomyces cerevisiae IAP-associated factor Viaf1 (VIAF1) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000017723 // cdna:Genscan chromosome:SGD1:XV:846266:847126:-1 // ensembl // 11 // --- /// GENEFINDER00000022626 // cdna:GeneFinder chromosome:SGD1:XV:846266:847126:-1 // ensembl // 11 // --- /// YOR281C // cdna:known chromosome:SGD1:XV:846266:847126:-1 gene:YOR281C // ensembl // 11 // --- --- No cerevisiae_gene 1.41591628639679 -2.6300709810298 -1.00313817595114 -1.67876824468021 1.08585260826925 Max fold change below threshold 4 2.6300709810298 Max fold change at or above threshold 0.702044264823758 -1.1529509534707 -0.508092676109396 0.958999364756339 449.121448516846 196.042836107108 0.436502947598049 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770315_at YNR030W.S1 Alpha-1,6-mannosyltransferase localized to the ER; responsible for the addition of the alpha-1,6 mannose to dolichol-linked Man7GlcNAc2, acts in the dolichol pathway for N-glycosylation 2.62920550910324 183.005249023438 487.780456542969 ALG12 6486 // protein amino acid glycosylation // inferred from sequence similarity /// 6486 // protein amino acid glycosylation // inferred from mutant phenotype /// 6488 // dolichol-linked oligosaccharide biosynthesis // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay 9 // alpha-1,6-mannosyltransferase activity // inferred from sequence similarity /// 9 // alpha-1,6-mannosyltransferase activity // inferred from mutant phenotype 456.985412597656 173.811218261719 192.199279785156 518.575500488281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR030W /GEN=ECM39 /DB_XREF=GI:6324357 /SEG=NC_001146:+678798,680453 /DEF=Alpha-1,6-mannosyltransferase localized to the ER; responsible for the addition of the alpha-1,6 mannose to dolichol-linked Man7GlcNAc2, acts in the dolichol pathway for N-glycosylation /NOTE=Ecm39p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: alpha-1,6-mannosyltransferase activity [goid GO:0000009] [evidence IMP,ISS] [pmid 10336995]; go_process: dolichol-linked oligosaccharide biosynthesis [goid GO:0006488] [evidence IMP] [pmid 10336995]; go_process: protein amino acid glycosylation [goid GO:0006486] [evidence IMP,ISS] [pmid 10336995] --- --- --- --- --- S0005313 // span:56-78,93-115,135-157,177-199,220-242,279-301,308-325,330-352,364-386 // numtm:9 S0005313 // ECM39 SGDID:S0005313, Chr XIV from 678799-680454, Verified ORF // sgd // 11 // --- /// GENSCAN00000020060 // cdna:Genscan chromosome:SGD1:XIV:678799:680454:1 // ensembl // 11 // --- /// GENEFINDER00000020548 // cdna:GeneFinder chromosome:SGD1:XIV:679300:680454:1 // ensembl // 11 // --- /// YNR030W // cdna:known chromosome:SGD1:XIV:678799:680454:1 gene:YNR030W // ensembl // 11 // --- --- No cerevisiae_gene -1.57598275422401 -2.62920550910324 1.11014212296132 -2.37766454228383 1.1347747350195 Max fold change below threshold 4 2.62920550910324 Max fold change at or above threshold 0.683457920866872 -0.908231952257968 -0.804874754113951 1.02964878550505 335.392852783203 177.907894695594 0.530446290728184 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779601_at YHR199C.S1 The authentic, non-tagged protein was localized to the mitochondria 2.62915083467952 982.501403808594 2137.01062011719 --- --- 5739 // mitochondrion // inferred from direct assay --- 2114.08471679688 804.094116210938 1160.90869140625 2159.9365234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR199C /GEN=RIX1 /DB_XREF=GI:6321993 /SEG=NC_001140:-497488,498420 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Yhr199cp --- --- --- --- --- --- S0001242 // FMP34 SGDID:S0001242, Chr VIII from 498421-497489, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016721 // cdna:Genscan chromosome:SGD1:VIII:497489:498421:-1 // ensembl // 11 // --- /// GENEFINDER00000020293 // cdna:GeneFinder chromosome:SGD1:VIII:497489:498370:-1 // ensembl // 11 // --- /// YHR199C // cdna:known chromosome:SGD1:VIII:497489:498421:-1 gene:YHR199C // ensembl // 11 // --- --- No cerevisiae_gene -1.12257565868728 -2.62915083467952 -1.02713093148476 -1.82106028876053 1.02168872717177 Max fold change below threshold 4 2.62915083467952 Max fold change at or above threshold 0.812150259204313 -1.10712470625091 -0.584353564858297 0.879328011904892 1559.75601196289 682.544515071726 0.437596976601982 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778214_at SPAC1F12.04c.S1 --- 2.62853363038765 --- --- --- --- 3.84011125564575 8.88623332977295 8.60381031036377 4.63482999801636 0.149657994508743 0.0461426004767418 0.030273400247097 0.0771484375 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F12.04c /DEF=sequence orphan --- --- --- --- --- --- SPAC1F12.04c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.33015173785345 2.31405621821721 2.62853363038765 2.24051068773448 1.20695200984144 Max fold change below threshold 4 2.62853363038765 Max fold change at or above threshold APPPPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1779016_at YBR098W.S1 Subunit of the structure-specific Mms4p-Mus81p endonuclease that cleaves branched DNA; involved in recombination and DNA repair 2.62781700258421 565.859710693359 271.068504333496 MMS4 6281 // DNA repair // inferred from mutant phenotype /// 7131 // meiotic recombination // inferred from genetic interaction 5634 // nucleus // inferred from sequence similarity 3713 // transcription coactivator activity // inferred from direct assay /// 4519 // endonuclease activity // inferred from direct assay 247.835250854492 651.265686035156 480.453735351563 294.3017578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR098W /GEN=MMS4 /DB_XREF=GI:27808702 /SEG=NC_001134:+441472,443547 /DEF=endonuclease /NOTE=Mms4p; go_component: nucleus [goid GO:0005634] [evidence ISS] [pmid 9604884]; go_function: endonuclease activity [goid GO:0004519] [evidence IDA] [pmid 11641278]; go_function: transcription coactivator activity [goid GO:0003713] [evidence IDA] [pmid 9604884]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 9604884]; go_process: meiotic recombination [goid GO:0007131] [evidence IGI] [pmid 11641278] --- --- --- --- --- --- S0000302 // MMS4 SGDID:S0000302, Chr II from 441509-443584, Verified ORF // sgd // 11 // --- /// GENSCAN00000021218 // cdna:Genscan chromosome:SGD1:II:441509:443584:1 // ensembl // 11 // --- /// GENEFINDER00000022338 // cdna:GeneFinder chromosome:SGD1:II:441509:443584:1 // ensembl // 11 // --- /// YBR098W // cdna:known chromosome:SGD1:II:441509:443584:1 gene:YBR098W // ensembl // 11 // --- YBR099C // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene 1.97877544516788 2.62781700258421 1.15400214417677 1.9386012832922 1.18748949876097 Max fold change below threshold 4 2.62781700258421 Max fold change at or above threshold -0.922791076163295 1.25903216714387 0.335250886068215 -0.671491977048785 418.464107513428 184.905187172336 0.441866300723062 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773553_at YDL161W.S1 Epsin-like protein involved in endocytosis and actin patch assembly and functionally redundant with Ent2p; binds clathrin via a clathrin-binding domain motif at C-terminus 2.62756948458121 1002.42419433594 2354.64318847656 ENT1 147 // actin cortical patch assembly // inferred from mutant phenotype /// 6897 // endocytosis // inferred from mutant phenotype /// 7015 // actin filament organization // inferred from mutant phenotype 30479 // actin cortical patch // inferred from physical interaction 30276 // clathrin binding // traceable author statement 2344.69360351563 892.343139648438 1112.50524902344 2364.5927734375 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL161W /GEN=ENT1 /DB_XREF=GI:6320039 /SEG=NC_001136:+167715,169079 /DEF=Epsin-like protein involved in endocytosis and actin patch assembly and functionally redundant with Ent2p; binds clathrin via a clathrin-binding domain motif at C-terminus /NOTE=Ent1p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IPI] [pmid 10652251]; go_function: clathrin binding [goid GO:0030276] [evidence TAS] [pmid 12461563]; go_process: actin cortical patch assembly [goid GO:0000147] [evidence IMP] [pmid 10449404]; go_process: actin filament organization [goid GO:0007015] [evidence IMP] [pmid 10449404]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 10449404] --- --- --- --- --- --- S0002320 // ENT1 SGDID:S0002320, Chr IV from 167715-169079, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023426 // cdna:GeneFinder chromosome:SGD1:IV:167715:169079:1 // ensembl // 11 // --- /// GENSCAN00000024980 // cdna:Genscan chromosome:SGD1:IV:167715:169079:1 // ensembl // 11 // --- /// YDL161W // cdna:known chromosome:SGD1:IV:167715:169079:1 gene:YDL161W // ensembl // 11 // --- --- No cerevisiae_gene -2.02448493377539 -2.62756948458121 -1.27010915964051 -2.10757981193689 1.00848689564045 Max fold change below threshold 4 2.62756948458121 Max fold change at or above threshold 0.847636461976662 -1.0003660766997 -0.720226986881121 0.872956601604159 1678.53369140625 785.902851035822 0.468207969288602 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777402_at YOR186W.S1 Hypothetical protein 2.62720380037589 765.991607666016 454.973861694336 --- --- --- --- 404.668029785156 807.260864257813 724.722351074219 505.279693603516 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR186W /GEN=GSP2 /DB_XREF=GI:6324760 /SEG=NC_001147:+683111,683545 /DEF=Hypothetical ORF /NOTE=Yor186wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005712 // span:89-111 // numtm:1 S0005712 // YOR186W SGDID:S0005712, Chr XV from 683111-683545, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017603 // cdna:Genscan chromosome:SGD1:XV:683111:683545:1 // ensembl // 11 // --- /// YOR186W // cdna:known chromosome:SGD1:XV:683111:683545:1 gene:YOR186W // ensembl // 11 // --- YOR186C-A // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene 2.62720380037589 1.99487185752331 -1.25343219761412 1.79090587279401 1.24862765628354 Max fold change below threshold 4 2.62720380037589 Max fold change at or above threshold -1.0990812222572 1.05082456221964 0.610056590857306 -0.561799930819753 610.482734680176 187.260687133145 0.306741987111639 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777527_at SPCC1235.08c.S1 --- 2.62488843540174 --- --- --- --- 4.58449602127075 12.0337905883789 5.62497806549072 4.17239284515381 0.0805663987994194 0.00415039015933871 0.0375977009534836 0.030273400247097 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1235.08c /GEN=pdh1 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC1235.08c // |pdh1||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.04761876223798 2.62488843540174 1.18113327061481 1.22695669041754 -1.09876902569124 Max fold change below threshold 4 2.62488843540174 Max fold change at or above threshold AAPMPP No 3 0 APPP 1 3 0 No No 2 < x = 3
1772505_at YGL101W.S1 Hypothetical protein 2.62480836483853 212.188087463379 440.6201171875 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 399.633666992188 213.643707275391 210.732467651367 481.606567382813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL101W /GEN=RPL28 /DB_XREF=GI:6321337 /SEG=NC_001139:+312194,312841 /DEF=Hypothetical ORF /NOTE=Ygl101wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003069 // YGL101W SGDID:S0003069, Chr VII from 312196-312843, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019275 // cdna:Genscan chromosome:SGD1:VII:312196:312843:1 // ensembl // 11 // --- /// GENEFINDER00000021677 // cdna:GeneFinder chromosome:SGD1:VII:312196:312843:1 // ensembl // 11 // --- /// YGL101W // cdna:known chromosome:SGD1:VII:312196:312843:1 gene:YGL101W // ensembl // 11 // --- --- No cerevisiae_gene 2.62480836483853 -1.87056137570695 1.03747229136547 -1.89640291999682 1.20512010664063 Max fold change below threshold 4 2.62480836483853 Max fold change at or above threshold 0.538175323788186 -0.828693470904921 -0.850088618266697 1.14060676538343 326.404102325439 136.070089857129 0.416876163282596 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770023_at YDL055C.S1 GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase), synthesizes GDP-mannose from GTP and mannose-1-phosphate in cell wall biosynthesis; required for normal cell wall structure 2.6246800274843 1706.60601806641 1421.73858642578 PSA1 32 // cell wall mannoprotein biosynthesis // inferred from mutant phenotype /// 6486 // protein amino acid glycosylation // inferred from mutant phenotype /// 9298 // GDP-mannose biosynthesis // inferred from direct assay /// 9298 // GDP-mannose biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4475 // mannose-1-phosphate guanylyltransferase activity // inferred from direct assay /// 4475 // mannose-1-phosphate guanylyltransferase activity // inferred from mutant phenotype 1412.56066894531 1682.17199707031 1731.0400390625 1430.91650390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL055C /GEN=PSA1 /DB_XREF=GI:6320148 /SEG=NC_001136:-355674,356759 /DEF=synthesizes GDP-mannose from GTP and mannose-1-phosphate. /NOTE=Psa1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: mannose-1-phosphate guanylyltransferase activity [goid GO:0004475] [evidence IDA,IMP] [pmid 9195935]; go_process: GDP-mannose biosynthesis [goid GO:0009298] [evidence IDA,IMP] [pmid 9195935]; go_process: cell wall mannoprotein biosynthesis [goid GO:0000032] [evidence IMP] [pmid 11055399]; go_process: protein amino acid glycosylation [goid GO:0006486] [evidence IMP] [pmid 9195935] --- --- --- --- --- --- S0002213 // PSA1 SGDID:S0002213, Chr IV from 356759-355674, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023704 // cdna:GeneFinder chromosome:SGD1:IV:355674:356759:-1 // ensembl // 11 // --- /// GENSCAN00000025058 // cdna:Genscan chromosome:SGD1:IV:355674:356759:-1 // ensembl // 11 // --- /// YDL055C // cdna:known chromosome:SGD1:IV:355674:356759:-1 gene:YDL055C // ensembl // 11 // --- --- No cerevisiae_gene 2.6246800274843 1.19086707852789 -1.48457334974806 1.22546243649484 1.01299472324586 Max fold change below threshold 4 2.6246800274843 Max fold change at or above threshold -0.914186259845948 0.711513340538361 1.00617735518032 -0.803504435872732 1564.17230224609 165.843264069983 0.106026211966442 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774263_at YNL327W.S1 Glycosylphosphatidylinositol (GPI)-anchored cell wall endoglucanase required for proper cell separation after cytokinesis, expression is activated by Swi5p and tightly regulated in a cell cycle-dependent manner 2.62304864384132 180.773887634277 168.803764343262 EGT2 910 // cytokinesis // inferred from mutant phenotype 9277 // cell wall (sensu Fungi) // inferred from direct assay 8810 // cellulase activity // traceable author statement 138.629455566406 134.378128051758 227.169647216797 198.978073120117 0.000732421991415322 0.00195312988944352 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL327W /GEN=EGT2 /DB_XREF=GI:6324002 /SEG=NC_001146:+24047,27172 /DEF=Glycosylphosphatidylinositol (GPI)-anchored cell wall endoglucanase required for proper cell separation after cytokinesis, expression is activated by Swi5p and tightly regulated in a cell cycle-dependent manner /NOTE=Egt2p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: cellulase activity [goid GO:0008810] [evidence TAS] [pmid 11046133]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 8668141] --- --- --- --- --- --- S0005271 // EGT2 SGDID:S0005271, Chr XIV from 24047-27172, Verified ORF // sgd // 11 // --- /// GENSCAN00000019782 // cdna:Genscan chromosome:SGD1:XIV:24047:27172:1 // ensembl // 11 // --- /// GENEFINDER00000020563 // cdna:GeneFinder chromosome:SGD1:XIV:24047:27172:1 // ensembl // 11 // --- /// YNL327W // cdna:known chromosome:SGD1:XIV:24047:27172:1 gene:YNL327W // ensembl // 11 // --- --- No cerevisiae_gene 2.62304864384132 -1.03163704969168 1.18699745300609 1.63868238743806 1.43532319525559 Max fold change below threshold 4 2.62304864384132 Max fold change at or above threshold -0.790985790740894 -0.883983528715696 1.14582983096089 0.529139488495702 174.78882598877 45.7143109846434 0.261540237060581 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771768_at SPAC15A10.08.S1 --- 2.62301208774032 --- --- --- --- 2.3962094783783 3.51635479927063 6.28528642654419 6.07030296325684 0.334473013877869 0.274170011281967 0.111571997404099 0.018554700538516 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15A10.08 /GEN=ain1 /DEF=alpha-actinin --- --- --- --- --- --- SPAC15A10.08 // |ain1||alpha-actinin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.38961543820339 1.46746552461283 -1.80303034244357 2.62301208774032 2.53329394530444 Max fold change below threshold 3 2.62301208774032 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1776749_at YIR038C.S1 ER associated glutathione S-transferase capable of homodimerization; expression induced during the diauxic shift and throughout stationary phase; functional overlap with Gtt2p, Grx1p, and Grx2p 2.62239511795514 2902.79211425781 5610.52612304688 GTT1 6749 // glutathione metabolism // inferred from direct assay 5739 // mitochondrion // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay 4364 // glutathione transferase activity // inferred from direct assay /// 4364 // glutathione transferase activity // inferred from sequence similarity 6246.05859375 2684.513671875 3121.07055664063 4974.99365234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR038C /GEN=GTT1 /DB_XREF=GI:6322229 /SEG=NC_001141:-423806,424510 /DEF=ER associated glutathione S-transferase capable of homodimerization; expression induced during the diauxic shift and throughout stationary phase; functional overlap with Gtt2p, Grx1p, and Grx2p /NOTE=Gtt1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 9792709]; go_function: glutathione transferase activity [goid GO:0004364] [evidence IDA,ISS] [pmid 9792709]; go_process: glutathione metabolism [goid GO:0006749] [evidence IDA] [pmid 9792709] --- --- --- --- --- --- S0001477 // GTT1 SGDID:S0001477, Chr IX from 424510-423806, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016506 // cdna:Genscan chromosome:SGD1:IX:423806:424510:-1 // ensembl // 11 // --- /// GENEFINDER00000018997 // cdna:GeneFinder chromosome:SGD1:IX:423806:424510:-1 // ensembl // 11 // --- /// YIR038C // cdna:known chromosome:SGD1:IX:423806:424510:-1 gene:YIR038C // ensembl // 11 // --- --- No cerevisiae_gene -2.62239511795514 -2.32670023594532 -1.04534426930417 -2.00125517203077 -1.2554907664671 Max fold change below threshold 4 2.62239511795514 Max fold change at or above threshold 1.2007511218547 -0.948907161465893 -0.685412485963385 0.433568525574577 4256.65911865234 1656.7958496052 0.389224460644559 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779808_at YPL126W.S1 U3 snoRNP protein, component of the small (ribosomal) subunit (SSU) processosome containing U3 snoRNA; required for the biogenesis of18S rRNA 2.6222847823115 192.343803405762 493.090835571289 NAN1 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 30869 // RENT complex // inferred from physical interaction 30515 // snoRNA binding // inferred from physical interaction 459.510833740234 209.454605102539 175.233001708984 526.670837402344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL126W /GEN=NAN1 /DB_XREF=GI:6325131 /SEG=NC_001148:+310209,312899 /DEF=part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA); Net1-Associated Nucleolar protein 1 /NOTE=Nan1p; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: snoRNA binding [goid GO:0030515] [evidence IPI] [pmid 12068309]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP,IPI] [pmid 12068309] --- --- --- --- --- --- S0006047 // NAN1 SGDID:S0006047, Chr XVI from 310209-312899, Verified ORF // sgd // 11 // --- /// GENSCAN00000017093 // cdna:Genscan chromosome:SGD1:XVI:310209:312899:1 // ensembl // 11 // --- /// YPL126W // cdna:known chromosome:SGD1:XVI:310209:312899:1 gene:YPL126W // ensembl // 11 // --- --- No cerevisiae_gene 1.97356582552818 -2.19384450160587 -1.41435839621927 -2.6222847823115 1.14615543036375 Max fold change below threshold 4 2.6222847823115 Max fold change at or above threshold 0.662312282806039 -0.755705769651676 -0.949769527473198 1.04316301431884 342.717319488525 176.3420629267 0.514540855973882 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769466_at YDL049C.S1 Protein with similarity to Kre9p, which is involved in cell wall beta 1,6-glucan synthesis; overproduction suppresses growth defects of a kre9 null mutant 2.62201296949836 59.3732852935791 23.3979778289795 KNH1 6078 // beta-1,6 glucan biosynthesis // inferred from genetic interaction /// 6078 // beta-1,6 glucan biosynthesis // inferred from mutant phenotype 5576 // extracellular region // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // non-traceable author statement --- 25.8956489562988 67.8987274169922 50.847843170166 20.9003067016602 0.000244141003349796 0.00195312988944352 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL049C /GEN=KNH1 /DB_XREF=GI:6320154 /SEG=NC_001136:-365068,365874 /DEF=46% identical at amino acid level to Kre9p; located extracellularly /NOTE=Knh1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence NAS] [pmid 10672173]; go_component: extracellular [goid GO:0005576] [evidence IDA] [pmid 8810042]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: beta-1,6 glucan biosynthesis [goid GO:0006078] [evidence IGI,IMP] [pmid 8810042] --- --- --- --- --- --- S0002207 // KNH1 SGDID:S0002207, Chr IV from 365874-365068, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023750 // cdna:GeneFinder chromosome:SGD1:IV:365068:365874:-1 // ensembl // 11 // --- /// GENSCAN00000025063 // cdna:Genscan chromosome:SGD1:IV:365068:365874:-1 // ensembl // 11 // --- /// YDL049C // cdna:known chromosome:SGD1:IV:365068:365874:-1 gene:YDL049C // ensembl // 11 // --- --- No cerevisiae_gene 1.64281775838126 2.62201296949836 1.33173113679844 1.96356705545307 -1.23900808375419 Max fold change below threshold 4 2.62201296949836 Max fold change at or above threshold -0.704074166340694 1.20511341670067 0.43009078319585 -0.931130033555827 41.3856315612793 22.000498449598 0.531597504245456 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779371_at YIR018C-A.S1 Identified by expression profiling and mass spectrometry 2.62155516563582 571.185409545898 250.055725097656 --- --- --- --- 246.486694335938 646.178466796875 496.192352294922 253.624755859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR018C-A /GEN=YAP5 /DB_XREF=GI:33438817 /SEG=NC_001141:-385561,385698 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Yir018c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028837 // YIR018C-A SGDID:S0028837, Chr IX from 385698-385561, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YIR018C-A // cdna:known chromosome:SGD1:IX:385561:385698:-1 gene:YIR018C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.62639156525369 2.62155516563582 -1.34648609994741 2.01305938087944 1.02895921640991 Max fold change below threshold 4 2.62155516563582 Max fold change at or above threshold -0.840524273800503 1.20628441157518 0.438210353012082 -0.803970490786754 410.620567321777 195.275589417179 0.475562124641833 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772806_at YOL138C.S1 Hypothetical protein 2.62128277476023 327.666885375977 763.612426757813 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 743.060791015625 283.472198486328 371.861572265625 784.1640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL138C /GEN=CDC33 /DB_XREF=GI:6324434 /SEG=NC_001147:-61324,65349 /DEF=Hypothetical ORF /NOTE=Yol138cp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005498 // YOL138C SGDID:S0005498, Chr XV from 65349-61324, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017360 // cdna:Genscan chromosome:SGD1:XV:61324:65349:-1 // ensembl // 11 // --- /// GENEFINDER00000022887 // cdna:GeneFinder chromosome:SGD1:XV:61324:65214:-1 // ensembl // 11 // --- /// YOL138C // cdna:known chromosome:SGD1:XV:61324:65349:-1 gene:YOL138C // ensembl // 11 // --- --- No cerevisiae_gene -2.48495683889808 -2.62128277476023 -1.28945061409406 -1.99821881698722 1.0553161625285 Max fold change below threshold 4 2.62128277476023 Max fold change at or above threshold 0.774747612544828 -1.0288341818126 -0.681964246495759 0.936050815763528 545.639656066895 254.81993329448 0.467011388305764 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779635_at YBR227C.S1 Mitochondrial ATP-binding protein, possibly a mitochondrial chaperone with non-proteolytic function; similar to bacterial ClpX proteins 2.62026840209668 244.938674926758 591.567443847656 MCX1 --- 5759 // mitochondrial matrix // inferred from direct assay 5524 // ATP binding // inferred from sequence similarity /// 51082 // unfolded protein binding // traceable author statement 545.975158691406 208.366119384766 281.51123046875 637.159729003906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR227C /GEN=MCX1 /DB_XREF=GI:6319704 /SEG=NC_001134:-673529,675091 /DEF=Mitochondrial ATP-binding protein, similar to ClpX /NOTE=Mcx1p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 9827555]; go_function: ATP binding [goid GO:0005524] [evidence ISS] [pmid 9827555]; go_function: chaperone activity [goid GO:0003754] [evidence TAS] [pmid 9827555]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000431 // MCX1 SGDID:S0000431, Chr II from 675129-673567, reverse complement, Verified ORF // sgd // 11 // --- /// YBR227C // cdna:known chromosome:SGD1:II:673567:675129:-1 gene:YBR227C // ensembl // 11 // --- --- No cerevisiae_gene -1.33817160596623 -2.62026840209668 1.13588363084482 -1.93944361573885 1.1670123060746 Max fold change below threshold 4 2.62026840209668 Max fold change at or above threshold 0.620800861206487 -1.02016795698899 -0.664641793534451 1.06400888931695 418.253059387207 205.73763228353 0.491897495226841 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772900_at SPAC57A10.05c.S1 --- 2.62016282025415 --- --- --- --- 10.7064399719238 9.13911247253418 4.67533111572266 4.08617353439331 0.091552734375 0.129638999700546 0.24609400331974 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC57A10.05c /GEN=pof1 /DEF=F-box protein --- --- --- --- --- --- SPAC57A10.05c // |pof1||F-box protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.44667721265532 -1.17149668571209 -2.37335094202967 -2.28998539502778 -2.62016282025415 Max fold change below threshold 4 2.62016282025415 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774588_at SPAC1687.13c.S1 --- 2.6198430075513 --- --- --- --- 5.45370006561279 14.2878379821777 11.6790475845337 7.5866117477417 0.171387001872063 0.274170011281967 0.00292969006113708 0.018554700538516 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.13c /GEN=csn5 /DEF=COP9signalosome complex (subunit 5) (predicted) --- --- --- --- --- --- SPAC1687.13c // |csn5||COP9/signalosome complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.29544807933524 2.6198430075513 1.33406081083562 2.14149062911867 1.39109442332143 Max fold change below threshold 4 2.6198430075513 Max fold change at or above threshold APAPPP No 3 0 AAPP 2 2 0 No No 1 < x = 2
1772641_at SPBC11G11.01.S1 --- 2.61977453353923 --- --- --- --- 4.86192464828491 12.7371463775635 9.83185005187988 9.85907077789307 0.5 0.129638999700546 0.219482004642487 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11G11.01 /DEF=TPR repeat protein --- --- --- --- --- --- SPBC11G11.01 // |fis1||TPR repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.24090749300406 2.61977453353923 1.22950806648951 2.02221358065435 2.02781233587628 Max fold change below threshold 4 2.61977453353923 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771911_at YMR242C.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl20Bp and has similarity to rat L18a ribosomal protein 2.61960410731832 1203.55438232422 2544.90710449219 RPL20A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 2647.13745117188 1010.51049804688 1396.59826660156 2442.6767578125 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR242C /GEN=RPL20A /DB_XREF=GI:37362684 /SEG=NC_001145:-753224,754196 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl20Bp and has similarity to rat L18a ribosomal protein /NOTE=Rpl20ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004855 // RPL20A SGDID:S0004855, Chr XIII from 754196-754178,753741-753224, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000018919 // cdna:Genscan chromosome:SGD1:XIII:753224:753766:-1 // ensembl // 10 // --- /// YMR242C // cdna:known chromosome:SGD1:XIII:753224:754196:-1 gene:YMR242C // ensembl // 11 // --- GENEFINDER00000022043 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 1.52799230817118 -2.61960410731832 -1.37130484838394 -1.89541796984564 -1.08370354067743 Max fold change below threshold 4 2.61960410731832 Max fold change at or above threshold 0.972572386933737 -1.08684586669535 -0.60101970053926 0.715293180300876 1874.2307434082 794.703528649875 0.424015843003804 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774340_at YJL155C.S1 Fructose-2,6-bisphosphatase, required for glucose metabolism 2.61959535830965 1672.013671875 1080.56704711914 FBP26 6006 // glucose metabolism // inferred from mutant phenotype 5829 // cytosol // traceable author statement 3873 // 6-phosphofructo-2-kinase activity // inferred from sequence similarity /// 3873 // 6-phosphofructo-2-kinase activity // non-traceable author statement /// 4331 // fructose-2,6-bisphosphate 2-phosphatase activity // inferred from mutant phenotype 973.146179199219 1554.93188476563 1789.09545898438 1187.98791503906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL155C /GEN=FBP26 /DB_XREF=GI:6322306 /SEG=NC_001142:-129203,130561 /DEF=Fructose-2,6-bisphosphatase, required for glucose metabolism /NOTE=Fbp26p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: 6-phosphofructo-2-kinase activity [goid GO:0003873] [evidence ISS,NAS] [pmid 9032446]; go_function: fructose-2,6-bisphosphate 2-phosphatase activity [goid GO:0004331] [evidence IMP] [pmid 1322693]; go_process: gluconeogenesis [goid GO:0006094] [evidence TAS] --- --- --- ec // 6P21_YEAST // (P40433) 6-phosphofructo-2-kinase 1 (EC 2.7.1.105) (Phosphofructokinase 2 I) (6PF-2-K 1) // 0.0 --- --- S0003691 // FBP26 SGDID:S0003691, Chr X from 130561-129203, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024021 // cdna:Genscan chromosome:SGD1:X:129152:130378:-1 // ensembl // 11 // --- /// GENEFINDER00000024312 // cdna:GeneFinder chromosome:SGD1:X:129152:130510:-1 // ensembl // 11 // --- /// YJL155C // cdna:known chromosome:SGD1:X:129203:130561:-1 gene:YJL155C // ensembl // 11 // --- --- No cerevisiae_gene -2.61959535830965 1.59783999362269 1.25158995277667 1.83846527605604 1.22077026086321 Max fold change below threshold 4 2.61959535830965 Max fold change at or above threshold -1.10363666312292 0.489044233993192 1.13008413561048 -0.515491706480754 1376.29035949707 365.287049414515 0.265414232464725 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774903_at YGL078C.S1 Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis 2.61902119510815 453.596084594727 648.656463623047 DBP3 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 6365 // 35S primary transcript processing // inferred from mutant phenotype 5730 // nucleolus // inferred from direct assay 4004 // ATP-dependent RNA helicase activity // traceable author statement 605.8388671875 387.907440185547 519.284729003906 691.474060058594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL078C /GEN=DBP3 /DB_XREF=GI:6321360 /SEG=NC_001139:-360289,361860 /DEF=ATP-dependent RNA helicase CA3 of the DEAD/DEAH box family /NOTE=Dbp3p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 9032262]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence IMP] [pmid 9032262]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 9032262] --- --- --- --- --- --- S0003046 // DBP3 SGDID:S0003046, Chr VII from 361862-360291, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019291 // cdna:Genscan chromosome:SGD1:VII:360291:361340:-1 // ensembl // 11 // --- /// GENEFINDER00000021477 // cdna:GeneFinder chromosome:SGD1:VII:360291:361862:-1 // ensembl // 11 // --- /// YGL078C // cdna:known chromosome:SGD1:VII:360291:361862:-1 gene:YGL078C // ensembl // 11 // --- --- No cerevisiae_gene 2.61902119510815 -1.5618129595496 -1.30838222599383 -1.16667953696544 1.14134978376122 Max fold change below threshold 4 2.61902119510815 Max fold change at or above threshold 0.422346320994811 -1.25994529130683 -0.245796418578735 1.08339538889076 551.126274108887 129.544381846967 0.235053903130324 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772049_s_at YDR261C-D.S1 TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// Identified by expression profiling and mass spectrometry /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// Ty ORF /// Ty ORF /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition 2.6189359822889 8.0016872882843 19.4856882095337 --- 6319 // Ty element transposition // inferred from sequence similarity 943 // retrotransposon nucleocapsid // inferred from sequence similarity 3723 // RNA binding // inferred from sequence similarity /// 3887 // DNA-directed DNA polymerase activity // inferred from sequence similarity /// 3964 // RNA-directed DNA polymerase activity // inferred from sequence similarity /// 4540 // ribonuclease activity // inferred from sequence similarity /// 5515 // protein binding // inferred from sequence similarity /// 8233 // peptidase activity // inferred from sequence similarity 18.6817092895508 7.13332033157349 8.87005424499512 20.2896671295166 0.000732421991415322 0.030273400247097 0.00805663969367743 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR261C-D /GEN=EXG2 /DB_XREF=GI:7839160 /SEG=NC_001136:-987526,992341 /DEF=TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /NOTE=Ydr261c-dp; go_component: retrotransposon nucleocapsid [goid GO:0000943] [evidence ISS] [pmid 9582191]; go_function: DNA-directed DNA polymerase activity [goid GO:0003887] [evidence ISS] [pmid 9582191]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 9582191]; go_function: RNA-directed DNA polymerase activity [goid GO:0003964] [evidence ISS] [pmid 9582191]; go_function: peptidase activity [goid GO:0008233] [evidence ISS] [pmid 9582191]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 9582191]; go_function: ribonuclease activity [goid GO:0004540] [evidence ISS] [pmid 9582191]; go_process: Ty element transposition [goid GO:0006319] [evidence ISS] [pmid 9582191] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.60000002384186 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.70000004768372 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.79999995231628 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.5 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.59999990463257 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.70000004768372 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.79999995231628 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.90000009536743 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 4.59999990463257 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.69999980926514 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.80000019073486 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.90000009536743 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 6.30000019073486 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 7.90000009536743 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 9.19999980926514 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 9.5 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 7.59999990463257 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 7.80000019073486 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.39999961853027 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.5 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.69999980926514 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.89999961853027 --- S0002147 // YBL005W-B SGDID:S0002147, Chr II from 221333-222637,222639-226601, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007395 // YDR261C-D SGDID:S0007395, Chr IV from 992343-991039,991037-987528, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007401 // YDR365W-B SGDID:S0007401, Chr IV from 1206987-1208291,1208293-1212255, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007406 // YGR027W-B SGDID:S0007406, Chr VII from 536061-537365,537367-541329, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0003790 // YJR029W SGDID:S0003790, Chr X from 478258-479558,479560-483526, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0004648 // YMR045C SGDID:S0004648, Chr XIII from 362626-361322,361320-357358, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007387 // YNL284C-B SGDID:S0007387, Chr XIV from 102230-100926,100924-96962, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// GENSCAN00000021135 // cdna:Genscan chromosome:SGD1:II:223134:226601:1 // ensembl // 11 // --- /// GENEFINDER00000022184 // cdna:GeneFinder chromosome:SGD1:II:223134:226601:1 // ensembl // 11 // --- /// GENEFINDER00000023899 // cdna:GeneFinder chromosome:SGD1:IV:987528:990542:-1 // ensembl // 11 // --- /// GENSCAN00000025304 // cdna:Genscan chromosome:SGD1:IV:987528:990542:-1 // ensembl // 11 // --- /// GENEFINDER00000023755 // cdna:GeneFinder chromosome:SGD1:IV:1208788:1212255:1 // ensembl // 11 // --- /// GENSCAN00000025390 // cdna:Genscan chromosome:SGD1:IV:1208788:1212255:1 // ensembl // 11 // --- /// GENSCAN00000019361 // cdna:Genscan chromosome:SGD1:VII:537862:541329:1 // ensembl // 11 // --- /// GENEFINDER00000021411 // cdna:GeneFinder chromosome:SGD1:VII:537862:541329:1 // ensembl // 11 // --- /// GENSCAN00000024155 // cdna:Genscan chromosome:SGD1:X:480059:483526:1 // ensembl // 11 // --- /// GENEFINDER00000024293 // cdna:GeneFinder chromosome:SGD1:X:480059:483526:1 // ensembl // 11 // --- /// GENEFINDER00000024586 // cdna:GeneFinder chromosome:SGD1:XII:653460:656389:1 // ensembl // 11 // --- /// GENSCAN00000018019 // cdna:Genscan chromosome:SGD1:XII:654212:656389:1 // ensembl // 11 // --- /// GENSCAN00000018752 // cdna:Genscan chromosome:SGD1:XIII:357358:360825:-1 // ensembl // 11 // --- /// GENEFINDER00000021925 // cdna:GeneFinder chromosome:SGD1:XIII:357358:360423:-1 // ensembl // 11 // --- /// GENSCAN00000019813 // cdna:Genscan chromosome:SGD1:XIV:96962:100429:-1 // ensembl // 11 // --- /// GENEFINDER00000020607 // cdna:GeneFinder chromosome:SGD1:XIV:96962:100429:-1 // ensembl // 11 // --- /// YBL005W-B // cdna:known chromosome:SGD1:II:221333:226601:1 gene:YBL005W-B // ensembl // 11 // --- /// YDR261C-D // cdna:known chromosome:SGD1:IV:987528:992343:-1 gene:YDR261C-D // ensembl // 11 // --- /// YDR365W-B // cdna:known chromosome:SGD1:IV:1206987:1212255:1 gene:YDR365W-B // ensembl // 11 // --- /// YGR027W-B // cdna:known chromosome:SGD1:VII:536061:541329:1 gene:YGR027W-B // ensembl // 11 // --- /// YJR029W // cdna:known chromosome:SGD1:X:478258:483526:1 gene:YJR029W // ensembl // 11 // --- /// YMR045C // cdna:known chromosome:SGD1:XIII:357358:362626:-1 gene:YMR045C // ensembl // 11 // --- /// YNL284C-B // cdna:known chromosome:SGD1:XIV:96962:102230:-1 gene:YNL284C-B // ensembl // 11 // --- --- No cerevisiae_gene -1.26485308051241 -2.6189359822889 1.15484354842201 -2.10615502155377 1.08607123764982 Max fold change below threshold 4 2.6189359822889 Max fold change at or above threshold 0.736982122046709 -0.986573786007256 -0.727372436962997 0.976964100923544 13.743687748909 6.70032744746665 0.487520348968823 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1777447_at SPBC409.21.S1 --- 2.61860503049663 --- --- --- --- 1.00281620025635 1.75834691524506 0.941760420799255 0.382958173751831 0.828612983226776 0.919434010982513 0.943848013877869 0.981445014476776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC409.21 /GEN=sec66 /DEF=localization signal recognition particle (predicted) --- --- --- --- --- --- SPBC409.21 // |sec66||ER protein translocation subcomplex subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.25889659354926 1.75340896446983 -1.40154684052121 -1.06483154113153 -2.61860503049663 Max fold change below threshold 0 2.61860503049663 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773888_at YAL012W.S1 Cystathionine gamma-lyase, catalyzes one of the two reactions involved in the transsulfuration pathway that yields cysteine from homocysteine with the intermediary formation of cystathionine; 2.61838528468522 1384.42565917969 3439.22021484375 CYS3 96 // sulfur amino acid metabolism // traceable author statement /// 6534 // cysteine metabolism // traceable author statement /// 19346 // transsulfuration // traceable author statement 5737 // cytoplasm // inferred from direct assay 4123 // cystathionine gamma-lyase activity // inferred from direct assay 3579.15625 1366.9326171875 1401.91870117188 3299.2841796875 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL012W /GEN=CYS3 /DB_XREF=GI:6319307 /SEG=NC_001133:+130804,131988 /DEF=catalyzes one of the two reactions involved in the transsulfuration pathway that yields cysteine from homocysteine with the intermediary formation of cystathionine /NOTE=Cys3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: cystathionine gamma-lyase activity [goid GO:0004123] [evidence IDA] [pmid 1577698]; go_process: cysteine metabolism [goid GO:0006534] [evidence TAS] [pmid 1732168]; go_process: sulfur amino acid metabolism [goid GO:0000096] [evidence TAS] [pmid 1732168]; go_process: transsulfuration [goid GO:0019346] [evidence TAS] [pmid 1732168] --- --- --- --- --- --- S0000010 // CYS3 SGDID:S0000010, Chr I from 130802-131986, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018247 // cdna:GeneFinder chromosome:SGD1:I:130802:131986:1 // ensembl // 11 // --- /// GENSCAN00000020370 // cdna:Genscan chromosome:SGD1:I:130802:131986:1 // ensembl // 11 // --- /// YAL012W // cdna:known chromosome:SGD1:I:130802:131986:1 gene:YAL012W // ensembl // 11 // --- --- No cerevisiae_gene -1.17519058277901 -2.61838528468522 -1.47870376347557 -2.55304123342399 -1.08482811878879 Max fold change below threshold 4 2.61838528468522 Max fold change at or above threshold 0.979379437906549 -0.876651152431997 -0.847298223935975 0.744569938461423 2411.82293701172 1191.91119172717 0.494195147345255 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771733_at YGR084C.S1 Mitochondrial ribosomal protein of the small subunit 2.61829538750488 346.441101074219 906.456115722656 MRP13 6412 // protein biosynthesis // traceable author statement 5763 // mitochondrial small ribosomal subunit // traceable author statement /// 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // traceable author statement 870.611022949219 332.510620117188 360.37158203125 942.301208496094 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR084C /GEN=MRP13 /DB_XREF=GI:6321521 /SEG=NC_001139:-647125,648144 /DEF=Mitochondrial ribosomal protein of the small subunit /NOTE=Mrp13p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 12392552]; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0003316 // MRP13 SGDID:S0003316, Chr VII from 648146-647127, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000019403 // cdna:Genscan chromosome:SGD1:VII:647127:648146:-1 // ensembl // 10 // --- /// YGR084C // cdna:known chromosome:SGD1:VII:647127:648146:-1 gene:YGR084C // ensembl // 10 // --- --- No cerevisiae_gene 1.31059399438773 -2.61829538750488 -1.01403956691175 -2.41587035815083 1.08234467937705 Max fold change below threshold 4 2.61829538750488 Max fold change at or above threshold 0.751625237156424 -0.904853478606254 -0.819086788656896 0.972315030106727 626.448608398438 324.845950455982 0.518551635522784 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775409_at YDR524W-A.S1 Identified by SAGE 2.61812600953979 442.100952148438 625.667297363281 --- --- --- --- 707.447082519531 613.990661621094 270.211242675781 543.887512207031 0.000244141003349796 0.000732421991415322 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR524W-A /GEN=AGE1 /DB_XREF=GI:33438784 /SEG=NC_001136:+1489391,1489480 /DEF=Identified by SAGE /NOTE=Ydr524w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028740 // YDR524W-A SGDID:S0028740, Chr IV from 1489393-1489482, Uncharacterized ORF // sgd // 11 // --- /// YDR524W-A // cdna:known chromosome:SGD1:IV:1489393:1489482:1 gene:YDR524W-A // ensembl // 11 // --- --- No cerevisiae_gene -2.33239041476913 -1.15221146955507 -1.44070918689728 -2.61812600953979 -1.30072315808244 Max fold change below threshold 4 2.61812600953979 Max fold change at or above threshold 0.922630436195537 0.425832389597331 -1.40163909016648 0.0531762643736154 533.884124755859 188.117528920201 0.352356476241405 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778288_at YPR131C.S1 Catalytic subunit of the NatB N-terminal acetyltransferase, which catalyzes acetylation of the amino-terminal methionine residues of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met 2.61704498923028 166.977523803711 458.629364013672 NAT3 1 // mitochondrion inheritance // inferred from mutant phenotype /// 1 // mitochondrion inheritance // inferred from genetic interaction /// 7010 // cytoskeleton organization and biogenesis // inferred from mutant phenotype /// 7010 // cytoskeleton organization and biogenesis // inferred from genetic interaction /// 17196 // N-terminal peptidyl-methionine acetylation // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4596 // peptide alpha-N-acetyltransferase activity // inferred from mutant phenotype /// 4596 // peptide alpha-N-acetyltransferase activity // inferred from sequence similarity 421.976501464844 161.241592407227 172.713455200195 495.2822265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR131C /GEN=NAT3 /DB_XREF=GI:31126970 /SEG=NC_001148:-793905,794492 /DEF=Catalytic subunit of the NatB N-terminal acetyltransferase, which catalyzes acetylation of the amino-terminal methionine residues of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met /NOTE=Nat3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: peptide alpha-N-acetyltransferase activity [goid GO:0004596] [evidence IMP,ISS] [pmid 10545125]; go_process: N-terminal peptidyl-methionine acetylation [goid GO:0017196] [evidence IMP] [pmid 10545125] --- --- --- --- --- --- S0006335 // NAT3 SGDID:S0006335, Chr XVI from 794494-793907, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017282 // cdna:Genscan chromosome:SGD1:XVI:793907:794662:-1 // ensembl // 11 // --- /// GENEFINDER00000020961 // cdna:GeneFinder chromosome:SGD1:XVI:793907:794350:-1 // ensembl // 10 // --- /// YPR131C // cdna:known chromosome:SGD1:XVI:793907:794494:-1 gene:YPR131C // ensembl // 11 // --- --- No cerevisiae_gene 2.59720845519951 -2.61704498923028 1.13223272525722 -2.44321729870856 1.17371992242029 Max fold change below threshold 4 2.61704498923028 Max fold change at or above threshold 0.638109999523391 -0.885869967868402 -0.81881761516143 1.06657758350644 312.803443908691 171.088147243727 0.546950970570734 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780193_at YDR334W.S1 Swi2/Snf2-related ATPase, component of the SWR1 complex; required for the incorporation of Htz1p into chromatin 2.61646625985447 600.593734741211 648.063354492188 SWR1 6338 // chromatin remodeling // inferred from direct assay /// 6338 // chromatin remodeling // inferred from physical interaction /// 6338 // chromatin remodeling // inferred from genetic interaction 812 // SWR1 complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay 4386 // helicase activity // inferred from sequence similarity 658.904663085938 705.076416015625 496.111053466797 637.222045898438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR334W /GEN=SWR1 /DB_XREF=GI:6320541 /SEG=NC_001136:+1135923,1140467 /DEF=Swi2/Snf2-related ATPase, component of the SWR1 complex; required for the incorporation of Htz1p into chromatin /NOTE=Swr1p; go_component: SWR1 complex [goid GO:0000812] [evidence IPI] [pmid 14690608]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: helicase activity [goid GO:0004386] [evidence ISS] [pmid 10077188]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 14645854]; go_process: chromatin remodeling [goid GO:0006338] [evidence IGI,IPI] [pmid 14690608] --- --- --- --- --- --- S0002742 // SWR1 SGDID:S0002742, Chr IV from 1135925-1140469, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023954 // cdna:GeneFinder chromosome:SGD1:IV:1135925:1140469:1 // ensembl // 11 // --- /// GENSCAN00000025363 // cdna:Genscan chromosome:SGD1:IV:1135925:1140469:1 // ensembl // 11 // --- /// YDR334W // cdna:known chromosome:SGD1:IV:1135925:1140469:1 gene:YDR334W // ensembl // 11 // --- --- No cerevisiae_gene -2.61646625985447 1.07007349547876 -1.12323574479296 -1.32813945281313 -1.03402678442634 Max fold change below threshold 4 2.61646625985447 Max fold change at or above threshold 0.384007718599326 0.896798346675041 -1.42400328437121 0.14319721909684 624.328544616699 90.0401653262471 0.144219203338727 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779130_at SPCC622.08c.S1 --- 2.61619335406944 --- --- --- --- 25.5624122619629 59.457275390625 66.8762130737305 26.6735343933105 0.219482004642487 0.0952147990465164 0.111571997404099 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC622.08c /GEN=hta1 /DEF=histone H2A (alpha) (PMID 3018512) --- --- --- --- --- --- SPCC622.08c // |hta1||histone H2A |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.20599294168526 2.32596496689391 -1.12368544877271 2.61619335406944 1.04346702963558 Max fold change below threshold 4 2.61619335406944 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770233_at SPAC1782.05.S1 --- 2.61456691527532 12.2581267356873 6.65589141845703 --- --- --- --- 5.67587804794312 14.8399629592896 9.67629051208496 7.63590478897095 0.334473013877869 0.0805663987994194 0.0676269978284836 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1782.05 /DEF=similar to S. cerevisiae YPL152W --- --- --- --- --- --- SPAC1782.05 // |||phosphotyrosyl phosphatase activator homolog|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No cerevisiae_gene 1.1060511649871 2.61456691527532 1.3586762830333 1.70480944628322 1.34532573189062 Max fold change below threshold 4 2.61456691527532 Max fold change at or above threshold -0.958989887347786 1.36525243302534 0.0556152846966644 -0.461877830374214 9.45700907707214 3.94282680038082 0.416921118320582 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775143_at SPBC1709.18.S1 --- 2.61450492114453 --- --- --- --- 4.2139573097229 3.12284827232361 1.98328018188477 1.61176109313965 0.432372987270355 0.567627012729645 0.334473013877869 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1709.18 /GEN=tif452 /DEF=translation initiation factor --- --- --- --- --- --- SPBC1709.18 // |tif452|SPBC409.01|translation initiation factor|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.28059073186193 -1.34939546921613 -1.79925279768225 -2.12474129889114 -2.61450492114453 Max fold change below threshold 2 2.61450492114453 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770378_at YKL188C.S1 Subunit of a heterodimeric peroxisomal ATP-binding cassette transporter complex (Pxa1p-Pxa2p), required for import of long-chain fatty acids into peroxisomes; similarity to human adrenoleukodystrophy transporter and ALD-related proteins 2.61324944100186 639.963104248047 545.548431396484 PXA2 15908 // fatty acid transport // inferred from direct assay 5779 // integral to peroxisomal membrane // inferred from direct assay 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from direct assay 513.134033203125 689.257873535156 590.668334960938 577.962829589844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL188C /GEN=PXA2 /DB_XREF=GI:6322660 /SEG=NC_001143:-86230,88791 /DEF=Homolog of the human adrenoleukodystrophy transporter; forms a heterodimer with Pxa1p of two half ATP-binding cassette transporters in the peroxisome membrane /NOTE=Pxa2p; go_component: integral to peroxisomal membrane [goid GO:0005779] [evidence IDA] [pmid 9395310]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence IDA] [pmid 9395310]; go_process: fatty acid transport [goid GO:0015908] [evidence IDA] [pmid 9395310] --- --- --- --- --- --- S0001671 // PXA2 SGDID:S0001671, Chr XI from 88791-86230, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018277 // cdna:Genscan chromosome:SGD1:XI:86230:88791:-1 // ensembl // 11 // --- /// YKL188C // cdna:known chromosome:SGD1:XI:86230:88791:-1 gene:YKL188C // ensembl // 11 // --- --- No cerevisiae_gene -2.61324944100186 1.34323164891757 2.02274244372791 1.15109951151324 1.12633891379615 Max fold change below threshold 4 2.61324944100186 Max fold change at or above threshold -1.09453342554211 1.32658225600332 -0.0286952432175398 -0.203353587243668 592.755767822266 72.7449091650212 0.122723241365124 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775167_at YER131W.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps26Ap and has similarity to rat S26 ribosomal protein 2.61220671791996 604.716003417969 1470.69421386719 RPS26B 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 1472.81823730469 563.821472167969 645.610534667969 1468.57019042969 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER131W /GEN=RPS26B /DB_XREF=GI:6320978 /SEG=NC_001137:+423948,424307 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps26Ap and has similarity to rat S26 ribosomal protein /NOTE=Rps26bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0000933 // RPS26B SGDID:S0000933, Chr V from 423948-424307, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019680 // cdna:GeneFinder chromosome:SGD1:V:423948:424307:1 // ensembl // 11 // --- /// GENSCAN00000016912 // cdna:Genscan chromosome:SGD1:V:424062:424307:1 // ensembl // 9 // --- /// YER131W // cdna:known chromosome:SGD1:V:423948:424307:1 gene:YER131W // ensembl // 11 // --- --- No cerevisiae_gene 2.38101478724945 -2.61220671791996 -1.35431562051006 -2.28127974718093 -1.00289264136143 Max fold change below threshold 4 2.61220671791996 Max fold change at or above threshold 0.868334187014143 -0.945706610790481 -0.782484141932875 0.859856565709212 1037.70510864258 501.089482792668 0.482882351276215 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771291_at YAL037C-A.S1 Identified by SAGE 2.61189144938776 18.925085067749 34.756049156189 --- --- --- --- 19.7763614654541 26.5204830169678 11.3296871185303 49.7357368469238 0.00415039015933871 0.00292969006113708 0.000732421991415322 0.000244140625 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL037C-A /GEN=CDC19 /DB_XREF=GI:33438756 /SEG=NC_001133:-73429,73521 /DEF=Identified by SAGE /NOTE=Yal037c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028732 // YAL037C-A SGDID:S0028732, Chr I from 73519-73427, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YAL037C-A // cdna:known chromosome:SGD1:I:73427:73519:-1 gene:YAL037C-A // ensembl // 11 // --- --- No cerevisiae_gene 2.61189144938776 1.34101933074466 -1.53653773453909 -1.74553465233024 2.5149083633915 Max fold change below threshold 4 2.61189144938776 Max fold change at or above threshold -0.428650506230225 -0.0194224540201779 -0.941188138335683 1.38926109858609 26.840567111969 16.4801056894606 0.613999906213295 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777041_at YER032W.S1 Protein involved in 3' mRNA processing, interacts with Ref2p; potential Cdc28p substrate 2.61072435292452 143.404479980469 315.592468261719 FIR1 6378 // mRNA polyadenylylation // inferred from mutant phenotype /// 6378 // mRNA polyadenylylation // inferred from genetic interaction 5935 // bud neck // inferred from direct assay --- 286.646148681641 177.013320922852 109.795639038086 344.538787841797 0.000244141003349796 0.0461426004767418 0.014160200022161 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER032W /GEN=FIR1 /DB_XREF=GI:37362642 /SEG=NC_001137:+215062,217692 /DEF=Protein involved in 3' mRNA processing, interacts with Ref2p; potential Cdc28p substrate /NOTE=Fir1p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IGI,IMP] [pmid 9196079] --- --- --- --- --- --- S0000834 // FIR1 SGDID:S0000834, Chr V from 215062-217692, Verified ORF // sgd // 9 // --- /// GENSCAN00000016832 // cdna:Genscan chromosome:SGD1:V:215125:217728:1 // ensembl // 9 // --- /// GENEFINDER00000019717 // cdna:GeneFinder chromosome:SGD1:V:215410:217728:1 // ensembl // 9 // --- /// YER032W // cdna:known chromosome:SGD1:V:215062:217692:1 gene:YER032W // ensembl // 9 // --- --- No cerevisiae_gene 1.00742918448036 -1.61934789532914 1.09445500984209 -2.61072435292452 1.20196552239205 Max fold change below threshold 4 2.61072435292452 Max fold change at or above threshold 0.540126676393219 -0.496059228567921 -1.13136177395513 1.08729432612983 229.498474121094 105.804206787488 0.461023574089914 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1769560_at SPBC215.13.S1 --- 2.6106075178621 --- --- --- --- 14.6487836837769 10.4626731872559 13.029167175293 5.61125469207764 0.0952147990465164 0.0805663987994194 0.018554700538516 0.125 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC215.13 /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPBC215.13 // |||glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.24310405133898 -1.40009951774274 -1.42181901893474 -1.12430698652445 -2.6106075178621 Max fold change below threshold 4 2.6106075178621 Max fold change at or above threshold APAAPA No 4 0 AAPA 3 1 0 No No x = 1
AFFX-Scv2-r2-Ec-bioB-M_at AFFX-Scv2-r2-Ec-bioB-M --- 2.61054313838801 --- --- --- --- 488.578826904297 543.377136230469 187.156005859375 199.015808105469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2393-2682 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --- --- --- --- --- --- AFFX-Scv2-r2-Ec-bioB-M // --- // affx // --- // --- --- AFFX_control No -1.6365318641594 1.11215858385305 -1.8915552500454 -2.61054313838801 -2.45497496683969 Max fold change below threshold 4 2.61054313838801 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769917_at SPBC4F6.10.S1 --- 2.61015451208346 --- --- --- --- 0.950060129165649 0.462460070848465 2.29242587089539 0.381144851446152 0.805419981479645 0.943848013877869 0.805419981479645 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4F6.10 /GEN=vps901 /DEF=guanyl-nucleotide exchange factor activity (predicted) --- --- --- --- --- --- SPBC4F6.10 // |vps901|vps9a|guanyl-nucleotide exchange factor activity |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.85456230641361 -2.05436142286316 -2.61015451208346 2.41292714063121 -2.49264846569723 Max fold change below threshold 0 2.61015451208346 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779611_at SPCC645.14c.S1 --- 2.61006973451417 --- --- --- --- 0.519560217857361 0.960582852363586 0.630008339881897 1.35608839988709 0.919434010982513 0.953857004642487 0.969726979732513 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC645.14c /GEN=sti1 /DEF=TPR repeat protein --- --- --- --- --- --- SPCC645.14c // |sti1||TPR repeat protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.82476062818653 1.84883834317604 -1.16449052118614 1.21258002100318 2.61006973451417 Max fold change below threshold 0 2.61006973451417 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780097_at YMR273C.S1 Protein that interacts with silencing proteins at the telomere, involved in transcriptional silencing; has a role in localization of Bcy1p, a regulatory subunit of protein kinase A; implicated in mRNA nuclear export 2.60996244090599 303.077285766602 639.452697753906 ZDS1 6342 // chromatin silencing // inferred from mutant phenotype /// 6406 // mRNA-nucleus export // inferred from genetic interaction /// 6406 // mRNA-nucleus export // inferred from physical interaction /// 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 7569 // cell aging // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from genetic interaction 5643 // nuclear pore // inferred from physical interaction /// 5737 // cytoplasm // inferred from physical interaction /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 5515 // protein binding // inferred from direct assay 561.050048828125 223.211761474609 382.942810058594 717.855346679688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR273C /GEN=ZDS1 /DB_XREF=GI:6323929 /SEG=NC_001145:-811232,813979 /DEF=Protein that interacts with silencing proteins at the telomere, involved in transcriptional silencing; also has a role in localization of Bcy1p, which is a regulatory subunit of protein kinase A; paralog of Zds2p /NOTE=Zds1p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 8816439]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 8816439]; go_component: cytoplasm [goid GO:0005737] [evidence IPI] [pmid 11134339]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 11134339]; go_process: cell aging [goid GO:0007569] [evidence IMP] [pmid 10662670]; go_process: chromatin silencing [goid GO:0006342] [evidence IMP] [pmid 10662670]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IGI] [pmid 8816439] --- --- --- --- --- --- S0004886 // ZDS1 SGDID:S0004886, Chr XIII from 813979-811232, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018943 // cdna:Genscan chromosome:SGD1:XIII:811232:813979:-1 // ensembl // 11 // --- /// GENEFINDER00000022065 // cdna:GeneFinder chromosome:SGD1:XIII:811232:813721:-1 // ensembl // 11 // --- /// YMR273C // cdna:known chromosome:SGD1:XIII:811232:813979:-1 gene:YMR273C // ensembl // 11 // --- --- No cerevisiae_gene -2.60996244090599 -2.51353264326954 1.02556775037738 -1.4651014044167 1.27948540095324 Max fold change below threshold 4 2.60996244090599 Max fold change at or above threshold 0.418322914794052 -1.15571960085442 -0.411507144919214 1.14890383097958 471.264991760254 214.630979782865 0.455435866307789 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774996_at SPBC3B8.05.S1 --- 2.60938789717509 --- --- --- --- 11.2815284729004 15.4904375076294 6.47927474975586 6.23539018630981 0.0107421875 0.014160200022161 0.171387001872063 0.129638999700546 P P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B8.05 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC3B8.05 // |||diphthamide biosynthesis protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.60938789717509 1.37307968019044 -2.19631003709086 -1.74117149042421 -1.80927386030624 Max fold change below threshold 4 2.60938789717509 Max fold change at or above threshold PMPAAA No 4 0 PPAA 2 2 0 No No 1 < x = 2
1775449_at YNR032C-A.S1 Ubiquitin-like protein modifier, may function in modification of Sph1p and Hbt1p, functionally complemented by the human or S. pombe ortholog; mechanism of Hub1p adduct formation not yet clear 2.60911864581694 379.976150512695 163.854751586914 HUB1 753 // cellular morphogenesis during conjugation with cellular fusion // inferred from mutant phenotype /// 6464 // protein modification // inferred from direct assay 5937 // mating projection // inferred from physical interaction 31386 // protein tag // inferred from direct assay /// 31386 // protein tag // inferred from sequence similarity 165.008819580078 329.424713134766 430.527587890625 162.70068359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR032C-A /GEN=HUB1 /DB_XREF=GI:6324360 /SEG=NC_001146:-687242,687463 /DEF=Ubiquitin-like protein modifier, may function in modification of Sph1p and Hbt1p, functionally complemented by the human or S. pombe ortholog; mechanism of Hub1p adduct formation not yet clear /NOTE=Hub1p; go_component: shmoo tip [goid GO:0005937] [evidence IPI] [pmid 11923536]; go_function: protein binding [goid GO:0005515] [evidence IDA,ISS] [pmid 11923536]; go_process: cellular morphogenesis during conjugation with cellular fusion [goid GO:0000753] [evidence IMP] [pmid 11923536]; go_process: protein modification [goid GO:0006464] [evidence IDA] [pmid 11923536] --- --- --- --- --- --- S0007251 // HUB1 SGDID:S0007251, Chr XIV from 687464-687243, reverse complement, Verified ORF // sgd // 11 // --- /// YNR032C-A // cdna:known chromosome:SGD1:XIV:687243:687464:-1 gene:YNR032C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.07347527995607 1.99640670100605 1.00544746642737 2.60911864581694 -1.01418639390656 Max fold change below threshold 4 2.60911864581694 Max fold change at or above threshold -0.813407383998011 0.437563673881452 1.2068127255002 -0.830969015383642 271.915451049805 131.43061345751 0.483351030440107 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777716_at SPAC637.03.S1 --- 2.60911856605917 --- --- --- --- 8.10802936553955 21.1548099517822 17.9411602020264 9.33299160003662 0.030273400247097 0.171387001872063 0.366210997104645 0.194580003619194 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC637.03 /DEF=hypothetical protein --- --- --- --- --- --- SPAC637.03 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.349336138907 2.60911856605917 -1.17647738505753 2.21276458103115 1.15108014281539 Max fold change below threshold 4 2.60911856605917 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1775748_at YPR089W.S1 Hypothetical protein 2.60795175100294 424.668792724609 1076.5046081543 --- --- --- --- 1022.23614501953 391.968963623047 457.368621826172 1130.77307128906 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR089W /GEN=SRP54 /DB_XREF=GI:37362705 /SEG=NC_001148:+713271,715937 /DEF=Hypothetical ORF /NOTE=Ypr089wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006293 // YPR089W SGDID:S0006293, Chr XVI from 713273-715939, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017252 // cdna:Genscan chromosome:SGD1:XVI:713273:715939:1 // ensembl // 11 // --- /// GENEFINDER00000020951 // cdna:GeneFinder chromosome:SGD1:XVI:713273:715939:1 // ensembl // 11 // --- /// YPR089W // cdna:known chromosome:SGD1:XVI:713273:715939:1 gene:YPR089W // ensembl // 11 // --- --- No cerevisiae_gene -1.76661233392307 -2.60795175100294 1.00112572505046 -2.23503777092965 1.10617598174193 Max fold change below threshold 4 2.60795175100294 Max fold change at or above threshold 0.715099239238058 -0.944037530321875 -0.771877245217013 1.00081553630083 750.586700439453 379.8765677188 0.506106180000778 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771814_at YHR067W.S1 Mitochondrial 3-hydroxyacyl-thioester dehydratase involved in fatty acid biosynthesis, required for respiratory growth and for normal mitochondrial morphology 2.60685410164624 327.322143554688 138.588104248047 HTD2 6633 // fatty acid biosynthesis // inferred from genetic interaction /// 6633 // fatty acid biosynthesis // inferred from sequence similarity 5739 // mitochondrion // inferred from direct assay 19171 // 3-hydroxyacyl-[acyl-carrier protein] dehydratase activity // inferred from direct assay 147.836639404297 269.255737304688 385.388549804688 129.339569091797 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR067W /GEN=RMD12 /DB_XREF=GI:6321858 /SEG=NC_001140:+230971,231813 /DEF=Mitochondrial protein required for sporulation /NOTE=Rmd12p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001109 // RMD12 SGDID:S0001109, Chr VIII from 230971-231813, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020170 // cdna:GeneFinder chromosome:SGD1:VIII:230971:231813:1 // ensembl // 11 // --- /// YHR067W // cdna:known chromosome:SGD1:VIII:230971:231813:1 gene:YHR067W // ensembl // 11 // --- --- No cerevisiae_gene -1.2526417336545 1.82130585753062 -1.06723254559488 2.60685410164624 -1.14301168963515 Max fold change below threshold 4 2.60685410164624 Max fold change at or above threshold -0.71484382758094 0.304860566798022 1.28016956913461 -0.870186308351687 232.955123901367 119.072839706981 0.511140676851549 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770106_at YGR081C.S1 Protein of unknown function; deletion mutant has synthetic fitness defect with an sgs1 deletion mutant 2.60509845179252 71.0707168579102 111.170978546143 SLX9 6259 // DNA metabolism // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 112.888572692871 71.7644119262695 70.3770217895508 109.453384399414 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR081C /GEN=SLX9 /DB_XREF=GI:6321518 /SEG=NC_001139:-643150,643782 /DEF=Protein of unknown function; deletion mutant has synthetic fitness defect with an sgs1 deletion mutant /NOTE=Slx9p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA metabolism [goid GO:0006259] [evidence IGI] [pmid 14566339] --- --- --- --- --- --- S0003313 // SLX9 SGDID:S0003313, Chr VII from 643784-643152, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019400 // cdna:Genscan chromosome:SGD1:VII:643152:643784:-1 // ensembl // 11 // --- /// YGR081C // cdna:known chromosome:SGD1:VII:643152:643784:-1 gene:YGR081C // ensembl // 11 // --- --- No cerevisiae_gene 2.60509845179252 -1.57304393170326 -1.19790723498347 -1.60405441751206 -1.0313849435749 Max fold change below threshold 4 2.60509845179252 Max fold change at or above threshold 0.938213554438187 -0.834284263425113 -0.894082346693385 0.79015305568031 91.1208477020264 23.2012476134812 0.254620629620912 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774769_at YIL037C.S1 Pheromone-regulated protein, predicted to have 4 transmembrane segments and a coiled coil domain; regulated by Ste12p 2.60456367988894 57.3073768615723 130.850166320801 PRM2 747 // conjugation with cellular fusion // inferred from expression pattern 16021 // integral to membrane // inferred from sequence similarity --- 131.4267578125 64.1545715332031 50.4601821899414 130.273574829102 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL037C /GEN=PRM2 /DB_XREF=GI:6322152 /SEG=NC_001141:-283028,284998 /DEF=Pheromone-regulated protein, predicted to have 4 transmembrane segments and a coiled coil domain; regulated by Ste12p /NOTE=Prm2p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 11062271]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IEP] [pmid 11062271] --- --- --- --- --- S0001299 // span:20-42,319-341,418-440,632-654 // numtm:4 S0001299 // PRM2 SGDID:S0001299, Chr IX from 284998-283028, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019043 // cdna:GeneFinder chromosome:SGD1:IX:283028:284851:-1 // ensembl // 11 // --- /// YIL037C // cdna:known chromosome:SGD1:IX:283028:284998:-1 gene:YIL037C // ensembl // 11 // --- --- No cerevisiae_gene -1.16935981599098 -2.04859536384683 1.22804969683685 -2.60456367988894 -1.00885200997141 Max fold change below threshold 4 2.60456367988894 Max fold change at or above threshold 0.872025228118192 -0.698689809597441 -1.01843537553594 0.84509995701519 94.0787715911865 42.8290203276681 0.455246381338598 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773925_at SPAC23C11.13c.S1 --- 2.60434447121626 --- --- --- --- 4.90948486328125 1.88511347770691 4.25419521331787 4.28820371627808 0.432372987270355 0.601073980331421 0.466064006090164 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C11.13c /DEF=xanthine phosphoribosyltransferase (predicted) --- --- --- --- --- --- SPAC23C11.13c // |||xanthine phosphoribosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.07140746835959 -2.60434447121626 -2.29234122610738 -1.15403375188613 -1.14488144409856 Max fold change below threshold 3 2.60434447121626 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777916_at YKL092C.S1 GTPase activating factor for Rsr1p/Bud1p required for both axial and bipolar budding patterns; mutants exhibit random budding in all cell types 2.60400901735523 216.494964599609 575.987243652344 BUD2 282 // bud site selection // traceable author statement /// 7120 // axial bud site selection // traceable author statement /// 7121 // bipolar bud site selection // traceable author statement /// 7264 // small GTPase mediated signal transduction // traceable author statement /// 30447 // filamentous growth // inferred from mutant phenotype 5622 // intracellular // traceable author statement 4871 // signal transducer activity // traceable author statement /// 5096 // GTPase activator activity // traceable author statement /// 5099 // Ras GTPase activator activity // traceable author statement 532.257202148438 228.590789794922 204.399139404297 619.71728515625 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL092C /GEN=BUD2 /DB_XREF=GI:6322758 /SEG=NC_001143:-265790,269104 /DEF=GTPase activating factor for Rsr1p/Bud1p required for both axial and bipolar budding patterns; mutants exhibit random budding in all cell types /NOTE=Bud2p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 9891811]; go_function: GTPase activator activity [goid GO:0005096] [evidence TAS] [pmid 8234337]; go_function: Ras GTPase activator activity [goid GO:0005099] [evidence TAS] [pmid 9891811]; go_function: signal transducer activity [goid GO:0004871] [evidence TAS] [pmid 9891811]; go_process: axial budding [goid GO:0007120] [evidence TAS] [pmid 2065354]; go_process: bud site selection [goid GO:0000282] [evidence TAS] [pmid 8234337]; go_process: polar budding [goid GO:0007121] [evidence TAS] [pmid 2065354]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence TAS] [pmid 9891811] --- --- --- --- --- --- S0001575 // BUD2 SGDID:S0001575, Chr XI from 269104-265790, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018348 // cdna:Genscan chromosome:SGD1:XI:265790:266902:-1 // ensembl // 10 // --- /// GENEFINDER00000022987 // cdna:GeneFinder chromosome:SGD1:XI:265790:268621:-1 // ensembl // 10 // --- /// YKL092C // cdna:known chromosome:SGD1:XI:265790:269104:-1 gene:YKL092C // ensembl // 10 // --- --- No cerevisiae_gene -1.64416322659771 -2.32842802908178 1.01231557541068 -2.60400901735523 1.16431921006382 Max fold change below threshold 4 2.60400901735523 Max fold change at or above threshold 0.645135965963551 -0.795179754841941 -0.909922818125753 1.05996660700414 396.241104125977 210.833227720163 0.532083182498738 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777510_at YER130C.S1 Hypothetical protein 2.60349305218782 459.581436157227 209.284400939941 --- --- --- --- 203.3857421875 452.756652832031 466.406219482422 215.183059692383 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER130C /GEN=PAK1 /DB_XREF=GI:6320977 /SEG=NC_001137:-421111,422442 /DEF=Hypothetical ORF /NOTE=Yer130cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000932 // YER130C SGDID:S0000932, Chr V from 422442-421111, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016911 // cdna:Genscan chromosome:SGD1:V:421111:422442:-1 // ensembl // 11 // --- /// YER130C // cdna:known chromosome:SGD1:V:421111:422442:-1 gene:YER130C // ensembl // 11 // --- --- No cerevisiae_gene 2.60349305218782 2.22609828969544 -1.09380140623413 2.29321000806657 1.05800464367855 Max fold change below threshold 4 2.60349305218782 Max fold change at or above threshold -0.905668437528166 0.817736593238117 0.91206889435641 -0.824137050066362 334.432918548584 144.696636131817 0.432662660003059 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778386_at SPBC3B9.11c.S1 --- 2.60293620248563 --- --- --- --- 9.60072040557861 24.990062713623 11.9687738418579 6.29448461532593 0.111571997404099 0.0561522990465164 0.0676269978284836 0.149657994508743 A M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B9.11c /GEN=ctf1 /DEF=CPF complex (PMID 14617822) --- --- --- --- --- --- SPBC3B9.11c // |ctf1||rrm RNA recognition motif|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.3315065557991 2.60293620248563 -1.16331151906725 1.24665372349593 -1.52525917407163 Max fold change below threshold 4 2.60293620248563 Max fold change at or above threshold AAMAAA No 4 0 AMAA 3 0 1 No No x = 1
1777238_at YGR174C.S1 Essential for the expression and activity of ubiquinol-cytochrome c reductase; ubiquinol--cytochrome-c reductase assembly factor 2.60262515750938 726.256561279297 601.547302246094 CBP4 6461 // protein complex assembly // traceable author statement 5740 // mitochondrial membrane // traceable author statement --- 606.090026855469 678.233825683594 774.279296875 597.004577636719 0.00122069998178631 0.00122069998178631 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR174C /GEN=CBP4 /DB_XREF=GI:6321613 /SEG=NC_001139:-845896,846408 /DEF=Essential for the expression and activity of ubiquinol-cytochrome c reductase /NOTE=Cbp4p; go_component: mitochondrial membrane [goid GO:0005740] [evidence TAS] [pmid 8811190]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 8811190]; go_process: protein complex assembly [goid GO:0006461] [evidence TAS] [pmid 8811190] --- --- --- --- --- AAQ97231.1 // span:5-27 // numtm:1 /// S0003406 // span:28-50 // numtm:1 S0003406 // CBP4 SGDID:S0003406, Chr VII from 846410-845898, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019477 // cdna:Genscan chromosome:SGD1:VII:845898:846410:-1 // ensembl // 11 // --- /// GENEFINDER00000021586 // cdna:GeneFinder chromosome:SGD1:VII:845898:846341:-1 // ensembl // 10 // --- /// YGR174C // cdna:known chromosome:SGD1:VII:845898:846410:-1 gene:YGR174C // ensembl // 11 // --- AY389299 // gb // 5 // Cross Hyb Matching Probes /// AY389298 // gb // 2 // Cross Hyb Matching Probes No cerevisiae_gene -2.60262515750938 1.11903148976469 1.25411747361251 1.27749882454284 -1.01521839121354 Max fold change below threshold 4 2.60262515750938 Max fold change at or above threshold -0.704429153894555 0.174631919231968 1.34493118744219 -0.815133952779603 663.901931762695 82.069154275634 0.123616381199157 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772402_at SPAC13G7.08c.S1 --- 2.60193421022448 --- --- --- --- 8.2750883102417 3.59297156333923 3.70320606231689 3.33379077911377 0.129638999700546 0.633789002895355 0.466064006090164 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G7.08c /GEN=crb3 /DEF=WD repeat protein --- --- --- --- --- --- SPAC13G7.08c // |crb3||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.60193421022448 -2.30313214684922 -1.67998392244827 -2.23457408823327 -2.48218585343904 Max fold change below threshold 4 2.60193421022448 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776278_at YNL096C.S1 Protein component of the small (40S) ribosomal subunit, nearly identical to Rps7Ap; interacts with Kti11p; deletion causes hypersensitivity to zymocin; has similarity to rat S7 and Xenopus S8 ribosomal proteins 2.60147158031822 1224.35601806641 1595.27978515625 RPS7B 6412 // protein biosynthesis // traceable author statement 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 1560.85522460938 1097.78100585938 1350.93103027344 1629.70434570313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL096C /GEN=RPS7B /DB_XREF=GI:6324233 /SEG=NC_001146:-443398,444315 /DEF=Protein component of the small (40S) ribosomal subunit, nearly identical to Rps7Ap; interacts with Kti11p; deletion causes hypersensitivity to zymocin; has similarity to rat S7 and Xenopus S8 ribosomal proteins /NOTE=Rps7bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0005040 // RPS7B SGDID:S0005040, Chr XIV from 444315-444172,443826-443398, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020449 // cdna:GeneFinder chromosome:SGD1:XIV:443398:444315:-1 // ensembl // 11 // --- /// YNL096C // cdna:known chromosome:SGD1:XIV:443398:444315:-1 gene:YNL096C // ensembl // 11 // --- --- No cerevisiae_gene 2.60147158031822 -1.42182750136717 -1.25193836361566 -1.15539223663657 1.04410987003037 Max fold change below threshold 4 2.60147158031822 Max fold change at or above threshold 0.630789505563685 -1.30318516828815 -0.245934049399834 0.918329712124301 1409.81790161133 239.441718141898 0.169838755677759 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769480_at SPBC530.15c.S1 --- 2.60139964731862 --- --- --- --- 11.5778541564941 13.9399909973145 9.61345958709717 9.02501487731934 0.334473013877869 0.171387001872063 0.303710997104645 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC530.15c /DEF=unknown specificity --- --- --- --- --- --- SPBC530.15c // ||SPBC661.01|membrane transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.50722477814536 1.20402198964437 -2.60139964731862 -1.20433794427487 -1.28286261173822 Max fold change below threshold 4 2.60139964731862 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780240_at YNL312W.S1 Subunit of heterotrimeric Replication Factor A (RF-A), which is a highly conserved single-stranded DNA binding protein involved in DNA replication, repair, and recombination 2.60094297403981 400.049346923828 1016.88973999023 RFA2 6268 // DNA unwinding // traceable author statement /// 6269 // DNA replication, synthesis of RNA primer // traceable author statement /// 6271 // DNA strand elongation // traceable author statement /// 6289 // nucleotide-excision repair // traceable author statement /// 6301 // postreplication repair // traceable author statement /// 6302 // double-strand break repair // traceable author statement /// 6310 // DNA recombination // traceable author statement 781 // chromosome, telomeric region // inferred from mutant phenotype /// 5662 // DNA replication factor A complex // traceable author statement 3677 // DNA binding // traceable author statement 973.917175292969 374.447723388672 425.650970458984 1059.8623046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL312W /GEN=RFA2 /DB_XREF=GI:6324017 /SEG=NC_001146:+48286,49215 /DEF=Rfa1p, Rfa2p, and Rfa3p make up Replication Protein A (RPA), a highly conserved single-stranded DNA-binding protein involved in DNA replication, recombination and repair /NOTE=Rfa2p; go_component: DNA replication factor A complex [goid GO:0005662] [evidence TAS] [pmid 9242902]; go_component: chromosome, telomeric region [goid GO:0000781] [evidence IMP] [pmid 14702040]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 9242902]; go_process: DNA recombination [goid GO:0006310] [evidence TAS] [pmid 9242902]; go_process: DNA replication, synthesis of RNA primer [goid GO:0006269] [evidence TAS] [pmid 9242902]; go_process: DNA strand elongation [goid GO:0006271] [evidence TAS] [pmid 9242902]; go_process: DNA unwinding [goid GO:0006268] [evidence TAS] [pmid 9242902]; go_process: double-strand break repair [goid GO:0006302] [evidence TAS] [pmid 9242902]; go_process: nucleotide-excision repair [goid GO:0006289] [evidence TAS] [pmid 9242902]; go_process: postreplication repair [goid GO:0006301] [evidence TAS] [pmid 9242902] --- --- --- --- --- --- S0005256 // RFA2 SGDID:S0005256, Chr XIV from 48286-48292,48401-49215, intron sequence removed, Verified ORF // sgd // 11 // --- /// YNL312W // cdna:known chromosome:SGD1:XIV:48286:49215:1 gene:YNL312W // ensembl // 11 // --- --- No cerevisiae_gene 1.25303461081671 -2.60094297403981 -1.20065262662389 -2.28806520573131 1.08824685668848 Max fold change below threshold 4 2.60094297403981 Max fold change at or above threshold 0.740507411600251 -0.931805764045014 -0.788966350894779 0.980264703339542 708.469543457031 358.467218123179 0.505974069645973 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773455_at SPAC1687.06c.S1 --- 2.60054953070285 --- --- --- --- 2.12139463424683 5.51679182052612 3.65909385681152 3.80355739593506 0.398925989866257 0.129638999700546 0.334473013877869 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.06c /GEN=rpl44 /DEF=60S ribosomal protein L28L44 --- --- --- --- --- --- AB016007 // Schizosaccharomyces pombe mRNA for ribosomal protein L28 homolog, partial cds. // gb // 9 // --- /// SPAC1687.06c // |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.07359418838212 2.60054953070285 1.41378146938774 1.72485298008243 1.79295136064368 Max fold change below threshold 3 2.60054953070285 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777997_at YMR162C.S1 Non-essential P-type ATPase that is a potential aminophospholipid translocase, localizes to the trans-Golgi, likely involved in protein transport 2.60000282298005 192.11897277832 481.956008911133 DNF3 6886 // intracellular protein transport // inferred from genetic interaction 30140 // trans-Golgi network transport vesicle // inferred from direct assay 4012 // phospholipid-translocating ATPase activity // inferred from sequence similarity 430.038665771484 165.399307250977 218.838638305664 533.873352050781 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR162C /GEN=DNF3 /DB_XREF=GI:6323814 /SEG=NC_001145:-578950,583920 /DEF=Non-essential P-type ATPase that is a potential aminophospholipid translocase, localizes to the trans-Golgi, likely involved in protein transport /NOTE=Dnf3p; go_component: trans-Golgi network transport vesicle [goid GO:0030140] [evidence IDA] [pmid 12221123]; go_function: phospholipid-translocating ATPase activity [goid GO:0004012] [evidence ISS] [pmid 12221123]; go_process: intracellular protein transport [goid GO:0006886] [evidence IGI] [pmid 12221123] --- --- --- ec // A8A1_HUMAN // (Q9Y2Q0) Potential phospholipid-transporting ATPase IA (EC 3.6.3.1) (Chromaffin granule ATPase II) (ATPase class I type 8A member 1) // 0.0 /// ec // A11B_HUMAN // (Q9Y2G3) Potential phospholipid-transporting ATPase IF (EC 3.6.3.1) (ATPase class I type 11B) (ATPase IR) // 1.0E-179 --- S0004772 // span:170-192,454-476,497-519,1315-1337,1364-1386,1401-1418,1431-1453,1473-1490 // numtm:8 S0004772 // DNF3 SGDID:S0004772, Chr XIII from 583920-578950, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018848 // cdna:Genscan chromosome:SGD1:XIII:578950:583920:-1 // ensembl // 11 // --- /// GENEFINDER00000022035 // cdna:GeneFinder chromosome:SGD1:XIII:578950:583920:-1 // ensembl // 11 // --- /// YMR162C // cdna:known chromosome:SGD1:XIII:578950:583920:-1 gene:YMR162C // ensembl // 11 // --- --- No cerevisiae_gene -1.98044989210583 -2.60000282298005 -1.00532486962673 -1.96509477988446 1.2414543029358 Max fold change below threshold 4 2.60000282298005 Max fold change at or above threshold 0.534500663970207 -0.986446925705501 -0.679317924879984 1.13126418661528 337.037490844727 173.996369314036 0.516252268784533 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Sc-URA3-5_at AFFX-r2-Sc-URA3-5 Orotidine-5'-phosphate (OMP) decarboxylase, catalyzes the sixth enzymatic step in the de novo biosynthesis of pyrimidines, converting OMP into uridine monophosphate (UMP); converts 5-FOA into 5-fluorouracil, a toxic compound 2.59992546685371 468.890426635742 925.881256103516 URA3 6207 // 'de novo' pyrimidine base biosynthesis // traceable author statement /// 19856 // pyrimidine base biosynthesis // traceable author statement --- 4590 // orotidine-5'-phosphate decarboxylase activity // inferred from direct assay 743.686828613281 286.041595458984 651.7392578125 1108.07568359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=URA3 SGD:YEL021W orotidine-5-phosphate decarboxylase (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 7.40000009536743 --- S0000747 // URA3 SGDID:S0000747, Chr V from 116167-116970, Verified ORF // sgd // 11 // --- /// GENSCAN00000016786 // cdna:Genscan chromosome:SGD1:V:116167:116970:1 // ensembl // 11 // --- /// GENEFINDER00000019662 // cdna:GeneFinder chromosome:SGD1:V:116167:116970:1 // ensembl // 11 // --- /// YEL021W // cdna:known chromosome:SGD1:V:116167:116970:1 gene:YEL021W // ensembl // 11 // --- --- AFFX_control cerevisiae_gene 1.21021554729282 -2.59992546685371 1.31717808555332 -1.14108030120726 1.48997621170719 Max fold change below threshold 4 2.59992546685371 Max fold change at or above threshold 0.137112120580081 -1.21812266223233 -0.135174220709772 1.21618476236202 697.385841369629 337.687047999596 0.484218388111231 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 No No 3 < x
1773804_at YBR114W.S1 Protein that recognizes and binds damaged DNA in an ATP-dependent manner (with Rad7p) during nucleotide excision repair; subunit of Nucleotide Excision Repair Factor 4 (NEF4); member of the SWI/SNF family 2.59984545423129 192.446662902832 199.617988586426 RAD16 715 // nucleotide-excision repair, DNA damage recognition // traceable author statement 108 // repairosome // inferred from direct assay /// 113 // nucleotide excision repair factor 4 complex // inferred from direct assay 8094 // DNA-dependent ATPase activity // inferred from direct assay 175.290817260742 171.337982177734 213.55534362793 223.945159912109 0.000244140625 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR114W /GEN=RAD16 /DB_XREF=GI:6319590 /SEG=NC_001134:+467204,469576 /DEF=Protein that recognizes and binds damaged DNA in an ATP-dependent manner (with Rad7p) during nucleotide excision repair; subunit of Nucleotide Excision Repair Factor 4 (NEF4); member of the SWI/SNF family /NOTE=Rad16p; go_component: nucleotide excision repair factor 4 complex [goid GO:0000113] [evidence IDA] [pmid 9497356]; go_component: repairosome [goid GO:0000108] [evidence IDA] [pmid 9852079]; go_function: DNA-dependent ATPase activity [goid GO:0008094] [evidence IDA] [pmid 9497356]; go_process: nucleotide-excision repair, DNA damage recognition [goid GO:0000715] [evidence TAS] [pmid 10915862] --- --- --- --- --- --- S0000318 // RAD16 SGDID:S0000318, Chr II from 467242-469614, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022256 // cdna:GeneFinder chromosome:SGD1:II:467242:469614:1 // ensembl // 11 // --- /// GENSCAN00000021231 // cdna:Genscan chromosome:SGD1:II:467875:469614:1 // ensembl // 11 // --- /// YBR114W // cdna:known chromosome:SGD1:II:467242:469614:1 gene:YBR114W // ensembl // 11 // --- --- No cerevisiae_gene 2.59984545423129 -1.02307039590852 -1.35791338822343 1.21829167645599 1.27756355644685 Max fold change below threshold 4 2.59984545423129 Max fold change at or above threshold -0.779109639155308 -0.927589288914396 0.658214042174245 1.04848488589546 196.032325744629 26.6220663196699 0.135804471117434 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
RPTR-Sc-AB076373-1_at AFFX-Sc-AB076373-1 --- 2.59953265774589 --- --- --- --- 2.2670419216156 4.97068500518799 5.89324951171875 2.09091305732727 0.5 0.219482004642487 0.129638999700546 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL AB076373 /FEA=CDS_1 /DB_XREF=BAC00955.1 GI:21623749 /PROD=thiazole synthase /GEN=ptrA --- --- --- --- --- --- AFFX-Sc-AB076373-1 // --- // affx // --- // --- --- No No -1.34126644357983 2.19258627632507 -1.60735474109118 2.59953265774589 -1.08423538399701 Max fold change below threshold 2 2.59953265774589 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777365_at SPBC19C2.03.S1 --- 2.59949840538033 --- --- --- --- 0.832739055156708 0.329919993877411 2.16470384597778 0.366947382688522 0.953857004642487 0.99804699420929 0.919434010982513 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C2.03 /GEN=rpc10 /DEF=DNA-directed RNA polymerase (I, II, and III subunit) --- --- --- --- --- --- SPBC19C2.03 // |rpc10|rpb12|DNA-directed RNA polymerase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- U20867 // gb // 8 // Cross Hyb Matching Probes /// U80217 // gb // 8 // Cross Hyb Matching Probes No No -2.22184261288905 -2.52406362333448 -1.57113517231266 2.59949840538033 -2.26936910969485 Max fold change below threshold 0 2.59949840538033 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770227_at YPL216W.S1 Hypothetical protein 2.59940994670496 42.6598834991455 108.975666046143 --- --- --- --- 101.325256347656 38.9800987243652 46.3396682739258 116.626075744629 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL216W /GEN=BMS1 /DB_XREF=GI:6325040 /SEG=NC_001148:+143820,147128 /DEF=Hypothetical ORF /NOTE=Ypl216wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.DNA-binding protein Mj223 // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; DNA-binding protein Mj223 // 0.270000010728836 --- S0006137 // YPL216W SGDID:S0006137, Chr XVI from 143820-147128, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017022 // cdna:Genscan chromosome:SGD1:XVI:143820:147128:1 // ensembl // 11 // --- /// GENEFINDER00000020722 // cdna:GeneFinder chromosome:SGD1:XVI:143820:147128:1 // ensembl // 11 // --- /// YPL216W // cdna:known chromosome:SGD1:XVI:143820:147128:1 gene:YPL216W // ensembl // 11 // --- --- No cerevisiae_gene -1.59976612240377 -2.59940994670496 1.04597495772878 -2.18657707579382 1.15100696458615 Max fold change below threshold 4 2.59940994670496 Max fold change at or above threshold 0.655553838009306 -0.946744971500821 -0.757600698275622 1.04879183176714 75.817774772644 38.9098195999733 0.5132018147018 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774915_at SPAC12B10.15c.S1 --- 2.59927581791041 --- --- --- --- 2.34658145904541 1.24075245857239 6.09941244125366 4.42247438430786 0.567627012729645 0.633789002895355 0.171387001872063 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12B10.15c /DEF=sequence orphan --- --- --- --- --- --- SPAC12B10.15c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.28110571172765 -1.8912567473333 2.28074177151708 2.59927581791041 1.88464558400923 Max fold change below threshold 2 2.59927581791041 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1774743_at YBR233W-A.S1 Essential protein, component of the DASH complex; involved in spindle integrity and kinetochore function; interacts with Duo1p and Dam1p; localizes to intranuclear spindles and kinetochore 2.59841388089445 45.0368537902832 118.883724212646 DAD3 7067 // mitosis // inferred from mutant phenotype /// 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from physical interaction /// 31110 // regulation of microtubule polymerization or depolymerization // inferred from physical interaction /// 31110 // regulation of microtubule polymerization or depolymerization // inferred from direct assay 776 // kinetochore // inferred from direct assay /// 5819 // spindle // inferred from direct assay /// 42729 // DASH complex // inferred from direct assay /// 42729 // DASH complex // inferred from physical interaction 5515 // protein binding // inferred from direct assay 108.506904602051 48.3148078918457 41.7588996887207 129.260543823242 0.00122069998178631 0.000244141003349796 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR233W-A /GEN=DAD3 /DB_XREF=GI:21450619 /SEG=NC_001134:+684934,685218 /DEF=Essential protein, component of the DASH complex; involved in spindle integrity and kinetochore function; interacts with Duo1p and Dam1p; localizes to intranuclear spindles and kintechore /NOTE=Dad3p; go_component: kinetochore [goid GO:0000776] [evidence IDA] [pmid 12408861]; go_component: spindle [goid GO:0005819] [evidence IDA] [pmid 12408861]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 12408861]; go_process: mitosis [goid GO:0007067] [evidence IMP] [pmid 12408861] --- --- --- --- --- --- S0007595 // DAD3 SGDID:S0007595, Chr II from 684972-685256, Verified ORF // sgd // 11 // --- /// YBR233W-A // cdna:known chromosome:SGD1:II:684972:685256:1 gene:YBR233W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.94825410835002 -2.24583123345843 -1.01645768686005 -2.59841388089445 1.19126560929284 Max fold change below threshold 4 2.59841388089445 Max fold change at or above threshold 0.609544975179002 -0.772544201355584 -0.92307641845905 1.08607564463563 81.9602890014648 43.5515288970927 0.531373539889718 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773177_at YIL016W.S1 Protein of unknown function proposed to be involved in nuclear pore complex biogenesis and maintenance as well as protein folding; has similarity to the mammalian BAG-1 protein 2.59750144251092 92.7175903320313 234.07787322998 SNL1 6457 // protein folding // inferred from physical interaction /// 6999 // nuclear pore organization and biogenesis // inferred from genetic interaction 5635 // nuclear membrane // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // inferred from direct assay /// 16020 // membrane // inferred from sequence similarity 30188 // chaperone regulator activity // inferred from sequence similarity 229.666732788086 88.418327331543 97.0168533325195 238.489013671875 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL016W /GEN=SNL1 /DB_XREF=GI:6322173 /SEG=NC_001141:+321452,321931 /DEF=Suppressor of nup116-C lethal. Snl1p is the first Bag domain protein identified in S. cerevisiae. /NOTE=Snl1p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 9450961]; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 9450961]; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 9450961]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence IGI] [pmid 9450961] --- --- --- --- --- S0001278 // span:13-35 // numtm:1 S0001278 // SNL1 SGDID:S0001278, Chr IX from 321452-321931, Verified ORF // sgd // 11 // --- /// GENSCAN00000016463 // cdna:Genscan chromosome:SGD1:IX:321452:321931:1 // ensembl // 11 // --- /// GENEFINDER00000019091 // cdna:GeneFinder chromosome:SGD1:IX:321452:321931:1 // ensembl // 11 // --- /// YIL016W // cdna:known chromosome:SGD1:IX:321452:321931:1 gene:YIL016W // ensembl // 11 // --- --- No cerevisiae_gene -1.0542780825825 -2.59750144251092 -1.08306509347253 -2.36728697024337 1.03841340352906 Max fold change below threshold 4 2.59750144251092 Max fold change at or above threshold 0.810439498139297 -0.916963738540647 -0.811807707952158 0.918331948353508 163.397731781006 81.769214308074 0.500430534847726 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775430_at YGL077C.S1 Choline transporter (permease) that also controls the uptake of nitrogen mustard; expression is co-regulated with phospholipid biosynthetic genes and negatively regulated by choline and myo-inositol 2.59721712622026 2488.28173828125 978.929290771484 HNM1 15871 // choline transport // inferred from sequence similarity /// 15871 // choline transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from mutant phenotype 15220 // choline transporter activity // inferred from sequence similarity /// 15220 // choline transporter activity // inferred from mutant phenotype 959.995178222656 2493.31591796875 2483.24755859375 997.863403320313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL077C /GEN=HNM1 /DB_XREF=GI:6321361 /SEG=NC_001139:-362226,363917 /DEF=Choline transporter (permease) that also controls the uptake of nitrogen mustard; expression is co-regulated with phospholipid biosynthetic genes and negatively regulated by choline and myo-inositol /NOTE=Hnm1p; go_component: plasma membrane [goid GO:0005886] [evidence IMP,ISS] [pmid 2203793]; go_function: choline transporter activity [goid GO:0015220] [evidence IMP,ISS] [pmid 2203793]; go_process: choline transport [goid GO:0015871] [evidence IMP,ISS] [pmid 2203793] --- --- --- --- --- S0003045 // span:58-77,92-114,146-168,183-202,209-231,251-273,294-316,344-366,394-416,421-443,456-478,493-510 // numtm:12 S0003045 // HNM1 SGDID:S0003045, Chr VII from 363919-362228, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019292 // cdna:Genscan chromosome:SGD1:VII:362228:363919:-1 // ensembl // 11 // --- /// GENEFINDER00000021454 // cdna:GeneFinder chromosome:SGD1:VII:362228:363919:-1 // ensembl // 11 // --- /// YGL077C // cdna:known chromosome:SGD1:VII:362228:363919:-1 gene:YGL077C // ensembl // 11 // --- --- No cerevisiae_gene 1.2091502839961 2.59721712622026 -1.00218915212266 2.58672919919375 1.03944626593622 Max fold change below threshold 4 2.59721712622026 Max fold change at or above threshold -0.887603622592749 0.871655502224478 0.860103546626889 -0.844155426258618 1733.60551452637 871.57185551355 0.502750970858367 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779920_at YER034W.S1 Hypothetical protein 2.59624739097723 549.891250610352 294.064743041992 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 278.460235595703 497.746673583984 602.035827636719 309.669250488281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER034W /GEN=ZRG8 /DB_XREF=GI:6320872 /SEG=NC_001137:+221845,222402 /DEF=Hypothetical ORF /NOTE=Yer034wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000836 // YER034W SGDID:S0000836, Chr V from 221845-222402, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016834 // cdna:Genscan chromosome:SGD1:V:221845:222402:1 // ensembl // 11 // --- /// GENEFINDER00000019714 // cdna:GeneFinder chromosome:SGD1:V:221845:222402:1 // ensembl // 11 // --- /// YER034W // cdna:known chromosome:SGD1:V:221845:222402:1 gene:YER034W // ensembl // 11 // --- --- No cerevisiae_gene 2.59624739097723 1.7874964176453 1.17945155861883 2.16201723146861 1.11207709720497 Max fold change below threshold 4 2.59624739097723 Max fold change at or above threshold -0.930467868194057 0.49123062214936 1.16736788916944 -0.728130643124741 421.977996826172 154.242576381517 0.365522793940971 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769342_at YIL160C.S1 3-ketoacyl-CoA thiolase with broad chain length specificity, cleaves 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA during beta-oxidation of fatty acids 2.59534131560006 5268.74584960938 2360.60754394531 POT1 6635 // fatty acid beta-oxidation // traceable author statement 5782 // peroxisomal matrix // traceable author statement 3988 // acetyl-CoA C-acyltransferase activity // traceable author statement 2441.48779296875 6336.494140625 4200.99755859375 2279.72729492188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL160C /GEN=POT1 /DB_XREF=GI:6322031 /SEG=NC_001141:-40191,41444 /DEF=3-ketoacyl-CoA thiolase with broad chain length specifity, cleaves 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA during beta-oxidation of fatty acids /NOTE=Pot1p; go_component: peroxisomal matrix [goid GO:0005782] [evidence TAS]; go_function: acetyl-CoA C-acyltransferase activity [goid GO:0003988] [evidence TAS]; go_process: fatty acid beta-oxidation [goid GO:0006635] [evidence TAS] --- --- --- --- --- --- S0001422 // POT1 SGDID:S0001422, Chr IX from 41444-40191, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016353 // cdna:Genscan chromosome:SGD1:IX:40191:41396:-1 // ensembl // 11 // --- /// GENEFINDER00000019133 // cdna:GeneFinder chromosome:SGD1:IX:40191:41444:-1 // ensembl // 11 // --- /// YIL160C // cdna:known chromosome:SGD1:IX:40191:41444:-1 gene:YIL160C // ensembl // 11 // --- --- No cerevisiae_gene -1.99070986641489 2.59534131560006 1.45714083149623 1.72067112958427 -1.07095607374057 Max fold change below threshold 4 2.59534131560006 Max fold change at or above threshold -0.725397554182071 1.33216937654177 0.204076953661572 -0.810848776021271 3814.67669677734 1893.01562417997 0.496245363540033 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776592_at SPBC418.01c.S1 --- 2.59523256129209 --- --- --- --- 3.52601480484009 4.33026456832886 1.73864710330963 2.85793662071228 0.49169921875 0.5 0.533936023712158 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC418.01c /GEN=his4 /DEF=bifunctional enzyme --- --- --- --- --- --- SPBC418.01c // |his4|SPBC887.20c||Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.02948101645676 1.22809029683732 -2.59523256129209 -2.02802213176445 -1.23376242121188 Max fold change below threshold 3 2.59523256129209 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772881_at SPCC16A11.03c.S1 --- 2.59478263599022 --- --- --- --- 1.00516474246979 0.412414014339447 0.387379169464111 0.746625363826752 0.828612983226776 0.904784977436066 0.932372987270355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16A11.03c /DEF=conserved protein (mainly in protazoa) --- --- --- --- --- --- SPCC16A11.03c // |||conserved protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.489647816263 -2.43727106141079 -1.94561038934668 -2.59478263599022 -1.34627725117443 Max fold change below threshold 0 2.59478263599022 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Ec-bioC-5_at AFFX-r2-Ec-bioC-5 --- 2.59471500990858 --- --- --- --- 940.6796875 1039.70166015625 362.536804199219 399.710144042969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4257-4573 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --- --- --- --- --- --- J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioC protein corresponding to nucleotides 4609-4883 of J04423 /LEN=777 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// AFFX-r2-Ec-bioC-5 // E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4257-4573 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// AFFX-r2-Ec-bioC-5 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioC-5 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioC-5 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioC-5 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioC-5 // --- // gb // --- // --- /// AFFX-r2-Ec-bioC-5 // E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4257-4573 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-5 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioC-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-5 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-5 // --- // affx // --- // --- 957995 // gb // 3 // Cross Hyb Matching Probes /// 16445223 // gb // 3 // Cross Hyb Matching Probes /// 917590 // gb // 3 // Cross Hyb Matching Probes /// 15829254 // gb // 3 // Cross Hyb Matching Probes /// 1037747 // gb // 7 // Cross Hyb Matching Probes /// 26245917 // gb // 7 // Cross Hyb Matching Probes AFFX_control No -1.76887251377232 1.10526640892971 -1.84682474422979 -2.59471500990858 -2.353404589599 Max fold change below threshold 4 2.59471500990858 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775997_at SPCC191.04c.S1 --- 2.59382007035812 --- --- --- --- 7.06328868865967 11.3869409561157 18.3208999633789 9.00509548187256 0.296142578125 0.0561522990465164 0.0107421996071935 0.014160200022161 A M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC191.04c /DEF=dubious --- --- --- --- --- --- SPCC191.04c // |||dubious|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.26995918806165 1.61213019289411 1.44144229412555 2.59382007035812 1.27491539406148 Max fold change below threshold 4 2.59382007035812 Max fold change at or above threshold AAMPPP No 4 0 AMPP 1 2 1 No No 1 < x = 2
1779618_at YJL110C.S1 GATA zinc finger protein and Dal80p homolog that negatively regulates nitrogen catabolic gene expression by competing with Gat1p for GATA site binding; function requires a repressive carbon source; dimerizes with Dal80p and binds to Tor1p 2.59329984525065 328.323822021484 583.962371826172 GZF3 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence similarity /// 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 6807 // nitrogen compound metabolism // traceable author statement /// 6808 // regulation of nitrogen utilization // inferred from genetic interaction /// 6808 // regulation of nitrogen utilization // inferred from mutant phenotype /// 16481 // negative regulation of transcription // inferred from direct assay 5634 // nucleus // inferred from curator 3700 // transcription factor activity // inferred from direct assay /// 3704 // specific RNA polymerase II transcription factor activity // inferred from mutant phenotype /// 3704 // specific RNA polymerase II transcription factor activity // inferred from sequence similarity 533.176330566406 314.749389648438 341.898254394531 634.748413085938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL110C /GEN=GZF3 /DB_XREF=GI:6322351 /SEG=NC_001142:-209839,211494 /DEF=GATA zinc finger protein and Dal80p homolog that negatively regulates nitrogen catabolic gene expression by competing with Gat1p for GATA site binding; function requires a repressive carbon source; dimerizes with Dal80p and binds to Tor1p /NOTE=Gzf3p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 9106207]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IMP,ISS] [pmid 9106207]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IMP,ISS] [pmid 9106207]; go_process: nitrogen metabolism [goid GO:0006807] [evidence TAS] [pmid 10048020]; go_process: regulation of nitrogen utilization [goid GO:0006808] [evidence IGI,IMP] [pmid 12489124] --- --- --- --- --- --- S0003646 // GZF3 SGDID:S0003646, Chr X from 211494-209839, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024052 // cdna:Genscan chromosome:SGD1:X:209839:211494:-1 // ensembl // 11 // --- /// GENEFINDER00000024390 // cdna:GeneFinder chromosome:SGD1:X:209839:211224:-1 // ensembl // 11 // --- /// YJL110C // cdna:known chromosome:SGD1:X:209839:211494:-1 gene:YJL110C // ensembl // 11 // --- --- No cerevisiae_gene -2.59329984525065 -1.69397097532721 1.08346596171671 -1.55945906044654 1.19050373524952 Max fold change below threshold 4 2.59329984525065 Max fold change at or above threshold 0.50116749850453 -0.919887783865821 -0.743261047733104 1.1619813330944 456.143096923828 153.707560590907 0.336972238816045 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777941_at YCL033C.S1 Hypothetical protein 2.59301884842902 1322.44079589844 1287.80963134766 --- 6979 // response to oxidative stress // inferred from expression pattern /// 6979 // response to oxidative stress // inferred from mutant phenotype /// 6979 // response to oxidative stress // inferred from genetic interaction --- 318 // protein-methionine-R-oxide reductase activity // inferred from sequence similarity 1223.83288574219 1145.1689453125 1499.71264648438 1351.78637695313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL033C /GEN=LSB5 /DB_XREF=GI:6319816 /SEG=NC_001135:-62776,63282 /DEF=Hypothetical ORF /NOTE=Ycl033cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein-methionine-R-oxide reductase activity [goid GO:0000318] [evidence ISS] [pmid 11929995]; go_process: response to oxidative stress [goid GO:0006979] [evidence IEP,IGI,IMP] [pmid 11929995] --- --- --- --- --- --- S0000538 // YCL033C SGDID:S0000538, Chr III from 63282-62776, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023329 // cdna:GeneFinder chromosome:SGD1:III:62776:63282:-1 // ensembl // 11 // --- /// YCL033C // cdna:known chromosome:SGD1:III:62776:63282:-1 gene:YCL033C // ensembl // 11 // --- --- No cerevisiae_gene -2.59301884842902 -1.06869199584191 1.23594077145606 1.2254227386404 1.10455144056154 Max fold change below threshold 4 2.59301884842902 Max fold change at or above threshold -0.523881898087369 -1.03082536369625 1.25400313078429 0.300704130999325 1305.12521362305 155.173004025618 0.118895108611728 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771362_at SPAC29A4.07.S1 --- 2.59272577134426 --- --- --- --- 1.00497853755951 0.805467545986176 0.928510189056396 0.387614667415619 0.953857004642487 0.904784977436066 0.828612983226776 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29A4.07 /GEN=srb6 /DEF=RNA polymerase II holoenzyme component (PMID 10625684) --- --- --- --- --- --- SPAC29A4.07 // |srb6|med22|mediator complex subunit Srb6 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.52390363365978 -1.24769587870739 1.17237639956771 -1.08235596055314 -2.59272577134426 Max fold change below threshold 0 2.59272577134426 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770549_at YDL057W.S1 Hypothetical protein 2.59255242576112 361.348419189453 277.247253417969 --- --- --- --- 254.024169921875 259.727874755859 462.968963623047 300.470336914063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL057W /GEN=USO1 /DB_XREF=GI:6320146 /SEG=NC_001136:+351434,352420 /DEF=Hypothetical ORF /NOTE=Ydl057wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002215 // YDL057W SGDID:S0002215, Chr IV from 351434-352420, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025056 // cdna:Genscan chromosome:SGD1:IV:351530:352420:1 // ensembl // 11 // --- /// YDL057W // cdna:known chromosome:SGD1:IV:351434:352420:1 gene:YDL057W // ensembl // 11 // --- --- No cerevisiae_gene -2.59255242576112 1.02245339424094 1.66737262886563 1.82253902754778 1.18284152648337 Max fold change below threshold 4 2.59255242576112 Max fold change at or above threshold -0.666137596431037 -0.607929555739151 1.46620750348524 -0.192140351315048 319.297836303711 97.9882635833084 0.306886713413565 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775640_at YJR092W.S1 Protein involved in bud-site selection and required for axial budding pattern; localizes with septins to bud neck in mitosis and may constitute an axial landmark for next round of budding; potential Cdc28p substrate 2.59213787898465 311.719367980957 689.529510498047 BUD4 282 // bud site selection // traceable author statement /// 7120 // axial bud site selection // traceable author statement 142 // contractile ring (sensu Saccharomyces) // traceable author statement 5525 // GTP binding // inferred from sequence similarity 627.104309082031 241.925521850586 381.513214111328 751.954711914063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR092W /GEN=BUD4 /DB_XREF=GI:46562091 /SEG=NC_001142:+598649,602995 /DEF=Protein involved in bud-site selection and required for axial budding pattern; localizes with septins to bud neck in mitosis and may constitute 'axial landmark' for next round of budding; potential Cdc28p substrate /NOTE=Bud4p; go_component: contractile ring (sensu Saccharomyces) [goid GO:0000142] [evidence TAS] [pmid 9891811]; go_function: GTP binding [goid GO:0005525] [evidence ISS] [pmid 8707826]; go_process: axial budding [goid GO:0007120] [evidence TAS] [pmid 9891811]; go_process: bud site selection [goid GO:0000282] [evidence TAS] [pmid 9891811] --- --- --- --- --- --- S0003852 // BUD4 SGDID:S0003852, Chr X from 598649-602995, Verified ORF // sgd // 11 // --- /// GENSCAN00000024204 // cdna:Genscan chromosome:SGD1:X:598649:602995:1 // ensembl // 11 // --- /// GENEFINDER00000024456 // cdna:GeneFinder chromosome:SGD1:X:598649:602995:1 // ensembl // 11 // --- /// YJR092W // cdna:known chromosome:SGD1:X:598649:602995:1 gene:YJR092W // ensembl // 11 // --- --- No cerevisiae_gene 1.00451254112496 -2.59213787898465 -1.25268832674018 -1.64372893490142 1.19909032839336 Max fold change below threshold 4 2.59213787898465 Max fold change at or above threshold 0.547200987164218 -1.1192318836964 -0.515321371326711 1.08735226785889 500.624439239502 231.139696033794 0.461702781400201 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773827_s_at YHL033C.S1 Ribosomal protein L4 of the large (60S) ribosomal subunit, nearly identical to Rpl8Ap and has similarity to rat L7a ribosomal protein; mutation results in decreased amounts of free 60S subunits /// Ribosomal protein L4 of the large (60S) ribosomal subunit, nearly identical to Rpl8Bp and has similarity to rat L7a ribosomal protein; mutation results in decreased amounts of free 60S subunits 2.59195959835279 1495.04479980469 3275.63708496094 RPL8B /// RPL8A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3402.71044921875 1312.79455566406 1677.29504394531 3148.56372070313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL033C /GEN=RPL8A /DB_XREF=GI:6321754 /SEG=NC_001140:-35253,36023 /DEF=Ribosomal protein L4 of the large (60S) ribosomal subunit, nearly identical to Rpl8Bp and has similarity to rat L7a ribosomal protein; mutation results in decreased amounts of free 60S subunits /NOTE=Rpl8ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0001025 // RPL8A SGDID:S0001025, Chr VIII from 36023-35253, reverse complement, Verified ORF // sgd // 11 // --- /// S0003968 // RPL8B SGDID:S0003968, Chr XII from 48628-47858, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016523 // cdna:Genscan chromosome:SGD1:VIII:35253:36023:-1 // ensembl // 11 // --- /// GENEFINDER00000020281 // cdna:GeneFinder chromosome:SGD1:VIII:35253:36023:-1 // ensembl // 11 // --- /// GENSCAN00000017672 // cdna:Genscan chromosome:SGD1:XII:47858:48628:-1 // ensembl // 11 // --- /// GENEFINDER00000024715 // cdna:GeneFinder chromosome:SGD1:XII:47858:48628:-1 // ensembl // 11 // --- /// YHL033C // cdna:known chromosome:SGD1:VIII:35253:36023:-1 gene:YHL033C // ensembl // 11 // --- /// YLL045C // cdna:known chromosome:SGD1:XII:47858:48628:-1 gene:YLL045C // ensembl // 11 // --- YLL044W // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene 1.23736175966109 -2.59195959835279 -1.86120929243744 -2.02868926460007 -1.08071830557041 Max fold change below threshold 4 2.59195959835279 Max fold change at or above threshold 0.974577339999541 -1.027433393247 -0.678264370673812 0.731120423921275 2385.34094238281 1043.90843607796 0.437634896349516 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777800_at YLR128W.S1 Putative Nedd8 ligase; binds Nedd8; involved in cullin neddylation; not essential; similar to C.elegans DCN-1; contains UBA-like ubiquitin-binding domain and a DUF298 domain 2.5917746458542 76.5585708618164 168.200531005859 DCN1 45116 // protein neddylation // inferred from direct assay /// 45116 // protein neddylation // inferred from mutant phenotype /// 51443 // positive regulation of ubiquitin ligase activity // inferred from mutant phenotype /// 51443 // positive regulation of ubiquitin ligase activity // inferred from physical interaction --- 8047 // enzyme activator activity // inferred from mutant phenotype 148.83366394043 64.4217910766602 88.6953506469727 187.567398071289 0.000244141003349796 0.0107421996071935 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR128W /GEN=APC2 /DB_XREF=GI:6323157 /SEG=NC_001144:+398531,399434 /DEF=Hypothetical ORF /NOTE=Ylr128wp --- --- --- --- --- --- S0004118 // DCN1 SGDID:S0004118, Chr XII from 398531-398533,398628-399434, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YLR128W // cdna:known chromosome:SGD1:XII:398531:399434:1 gene:YLR128W // ensembl // 11 // --- GENEFINDER00000024882 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.96212978590295 -2.3103000002487 2.5917746458542 -1.67803230783563 1.26024847541456 Max fold change below threshold 4 2.5917746458542 Max fold change at or above threshold 0.471518539038932 -1.03304005116392 -0.600387731919035 1.16190924404402 122.379550933838 56.1040782415716 0.458443243282558 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1772966_at SPCC576.02.S1 --- 2.59158120308324 --- --- --- --- 15.3751668930054 8.73570442199707 9.60249137878418 7.26276636123657 0.0461426004767418 0.0375977009534836 0.0561522990465164 0.0239257998764515 P P M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC576.02 /DEF=hydantoin racemase (predicted) --- --- --- --- --- --- SPCC576.02 // |||hydantoin racemase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.59158120308324 -1.76003744521045 -1.65662449177218 -1.60116435271948 -2.11698492396327 Max fold change below threshold 4 2.59158120308324 Max fold change at or above threshold PAPAMP No 4 0 PPMP 0 3 1 No No 2 < x = 3
1773742_at SPAC821.04c.S1 --- 2.591174287357 --- --- --- --- 14.1167631149292 5.44801759719849 11.709358215332 15.7383670806885 0.129638999700546 0.129638999700546 0.111571997404099 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC821.04c /GEN=cid13 /DEF=poly(A) polymerase (PMID 12062100) --- --- --- --- --- --- SPAC821.04c // |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.69269380587805 -2.591174287357 1.2065492455024 -1.20559665656526 1.11487080661178 Max fold change below threshold 4 2.591174287357 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1775658_at SPAC26A3.14c.S1 --- 2.590911566181 --- --- --- --- 1.32659125328064 2.6385133266449 3.23757600784302 3.43708062171936 0.432372987270355 0.274170011281967 0.432372987270355 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26A3.14c /DEF=dubious --- --- --- --- --- --- SPAC26A3.14c // ||SPAC23A6.14c|dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.81607977251868 1.98894220063633 -1.58403108775101 2.44052265521617 2.590911566181 Max fold change below threshold 3 2.590911566181 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769824_at SPBC16G5.15c.S1 --- 2.59083448857313 --- --- --- --- 4.51350975036621 1.7421065568924 5.42158603668213 2.55058002471924 0.633789002895355 0.753906011581421 0.601073980331421 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16G5.15c /DEF=transcription factor (predicted) --- --- --- --- --- --- SPBC16G5.15c // |fkh2||fork head transcription factor Fkh2 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.97143994329894 -2.59083448857313 1.42384588436594 1.20119072219623 -1.7696013089662 Max fold change below threshold 3 2.59083448857313 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772554_at YBR019C.S1 UDP-glucose-4-epimerase, catalyzes the interconversion of UDP-galactose and UDP-D-glucose in galactose metabolism; also catalyzes the conversion of alpha-D-glucose or alpha-D-galactose to their beta-anomers 2.59079005800089 18.9381418228149 37.8523731231689 GAL10 6012 // galactose metabolism // non-traceable author statement --- 3978 // UDP-glucose 4-epimerase activity // inferred from direct assay 38.0117874145508 23.2043933868408 14.6718902587891 37.6929588317871 0.0375977009534836 0.0461426004767418 0.24609400331974 0.0107421996071935 P P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR019C /GEN=GAL10 /DB_XREF=GI:6319493 /SEG=NC_001134:-276215,278314 /DEF=UDP-glucose-4-epimerase, catalyzes the interconversion of UDP-galactose and UDP-D-glucose in galactose metabolism; also catalyzes the conversion of alpha-D-glucose or alpha-D-galactose to their beta-anomers /NOTE=Gal10p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: UDP-glucose 4-epimerase activity [goid GO:0003978] [evidence IDA] [pmid 14764091]; go_process: galactose metabolism [goid GO:0006012] [evidence NAS] [pmid 3082856] --- --- --- --- --- --- S0000223 // GAL10 SGDID:S0000223, Chr II from 278352-276253, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021154 // cdna:Genscan chromosome:SGD1:II:276253:278352:-1 // ensembl // 11 // --- /// GENEFINDER00000022212 // cdna:GeneFinder chromosome:SGD1:II:276253:278352:-1 // ensembl // 11 // --- /// YBR019C // cdna:known chromosome:SGD1:II:276253:278352:-1 gene:YBR019C // ensembl // 11 // --- --- No cerevisiae_gene -1.42007612740688 -1.63812890002577 -1.18174256163239 -2.59079005800089 -1.00845857137898 Max fold change below threshold 4 2.59079005800089 Max fold change at or above threshold 0.838919477876129 -0.4528366276967 -1.19718860420615 0.811105754026721 28.3952574729919 11.462995192226 0.403694004293816 PPPPAP Called_P_>2EXP 4 0 PPAP 1 3 0 Yes Yes 2 < x = 3
1771046_at YNL295W.S1 Hypothetical protein 2.59056515731751 421.363616943359 646.656677246094 --- --- --- --- 591.804443359375 328.401550292969 514.32568359375 701.508911132813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL295W /GEN=MON2 /DB_XREF=GI:6324034 /SEG=NC_001146:+76944,78518 /DEF=Hypothetical ORF /NOTE=Ynl295wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005239 // YNL295W SGDID:S0005239, Chr XIV from 76944-78518, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019803 // cdna:Genscan chromosome:SGD1:XIV:76944:78518:1 // ensembl // 11 // --- /// GENEFINDER00000020475 // cdna:GeneFinder chromosome:SGD1:XIV:76944:78518:1 // ensembl // 11 // --- /// YNL295W // cdna:known chromosome:SGD1:XIV:76944:78518:1 gene:YNL295W // ensembl // 11 // --- --- No cerevisiae_gene -2.59056515731751 -1.80207566873976 1.33661852921848 -1.15064143642265 1.18537283557842 Max fold change below threshold 4 2.59056515731751 Max fold change at or above threshold 0.367839593997651 -1.30862364728277 -0.125284423035527 1.06606847632065 534.010147094727 157.118203716312 0.294223255065678 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775939_at YOL031C.S1 Nucleotide exchange factor for the endoplasmic reticulum (ER) lumenal Hsp70 chaperone Kar2p, required for protein translocation into the ER; homolog of Yarrowia lipolytica SLS1; GrpE-like protein 2.5899301868318 262.695526123047 617.006072998047 SIL1 6616 // SRP-dependent cotranslational protein-membrane targeting, translocation // inferred from mutant phenotype /// 6616 // SRP-dependent cotranslational protein-membrane targeting, translocation // inferred from genetic interaction 5783 // endoplasmic reticulum // inferred from physical interaction --- 607.269470214844 267.825164794922 257.565887451172 626.74267578125 0.000244141003349796 0.00292969006113708 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL031C /GEN=SIL1 /DB_XREF=GI:6324542 /SEG=NC_001147:-266264,267529 /DEF=ER-localized protein required for protein translocation into the ER, interacts with the ATPase domain of the Kar2p chaperone suggesting some role in modulating its activity /NOTE=Sil1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IPI] [pmid 10958688]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: SRP-dependent cotranslational membrane targeting, translocation [goid GO:0006616] [evidence IGI,IMP] [pmid 10958688] --- --- --- --- --- --- S0005391 // SIL1 SGDID:S0005391, Chr XV from 267529-266264, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017442 // cdna:Genscan chromosome:SGD1:XV:266264:267529:-1 // ensembl // 11 // --- /// GENEFINDER00000022755 // cdna:GeneFinder chromosome:SGD1:XV:266264:267181:-1 // ensembl // 11 // --- /// YOL031C // cdna:known chromosome:SGD1:XV:266264:267529:-1 gene:YOL031C // ensembl // 11 // --- --- No cerevisiae_gene -2.5899301868318 -2.26741004968611 -1.29891591240378 -2.35772476015469 1.03206682786065 Max fold change below threshold 4 2.5899301868318 Max fold change at or above threshold 0.817639457133285 -0.840138952681168 -0.890243220772298 0.912742716320181 439.850799560547 204.758551209455 0.465518197111449 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770041_at SPBP8B7.18c.S1 --- 2.58985255083547 --- --- --- --- 0.330041021108627 0.354038923978806 0.449152767658234 0.127436220645905 0.976073980331421 0.696289002895355 0.696289002895355 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.18c /DEF=TENATHI domain --- --- --- --- --- --- SPBP8B7.18c // |||TENA/THI domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.85368008844632 1.07271187923722 1.61739278524885 1.36089982435972 -2.58985255083547 Max fold change below threshold 0 2.58985255083547 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Bs-thr-5_s_at AFFX-r2-Bs-thr-5 --- 2.58979412987088 --- --- --- --- 12.7202196121216 10.1366863250732 13.5848836898804 5.27728462219238 0.0561522990465164 0.111571997404099 0.0107421996071935 0.171387001872063 M A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=thrC /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 290-888 of gb:X04603.1 /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase. --- --- --- --- --- --- AFFX-r2-Bs-thr-5 // --- // gb // --- // --- /// X04603 // Bacillus subtilis /REF=X04603 /DEF=B subtilis thrC, thrB genes corresponding to nucleotides 1689-2151 of X04603 /LEN=2073 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-r2-Bs-thr-5 // B. subtilis /GEN=thrC /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 290-888 of gb:X04603.1 /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase. // affx // --- // --- /// AFFX-r2-Bs-thr-5 // --- // unknown // --- // --- /// AFFX-r2-Bs-thr-5 // --- // unknown // --- // --- /// AFFX-r2-Bs-thr-5 // --- // unknown // --- // --- /// AFFX-r2-Bs-thr-5 // --- // unknown // --- // --- /// AFFX-r2-Bs-thr-5 // B. subtilis /GEN=thrC /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 290-888 of gb:X04603.1 /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase. // affx // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-thr-5 // --- // unknown // --- // --- /// AFFX-r2-Bs-thr-5 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-5 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Bs-thr-5 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-5 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-5 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-5 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-5 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-5 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-5 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-5 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-5 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-5 // --- // affx // --- // --- /// AFFX-r2-Bs-thr-5 // --- // affx // --- // --- 50812173 // gb // 11 // Negative Strand Matching Probes AFFX_control No -2.58979412987088 -1.25486960967293 -1.84479501420098 1.06797556206772 -2.41037209905823 Max fold change below threshold 4 2.58979412987088 Max fold change at or above threshold MAAAPA No 4 0 MAPA 2 1 1 No No x = 1
1778384_at YIL002C.S1 Phosphatidylinositol 4,5-bisphosphate 5-phosphatase, synaptojanin-like protein with an N-terminal Sac1 domain, plays a role in phosphatidylinositol 4,5-bisphosphate homeostasis and in endocytosis; null mutation confers cold-tolerant growth 2.58940971163529 369.61735534668 961.434600830078 INP51 6897 // endocytosis // inferred from genetic interaction /// 7047 // cell wall organization and biogenesis // inferred from genetic interaction /// 16311 // dephosphorylation // inferred from direct assay /// 46856 // phosphoinositide dephosphorylation // inferred from direct assay /// 48017 // inositol lipid-mediated signaling // traceable author statement 5624 // membrane fraction // inferred from direct assay 4445 // inositol-polyphosphate 5-phosphatase activity // inferred from direct assay 894.143371582031 345.307800292969 393.926910400391 1028.72583007813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL002C /GEN=INP51 /DB_XREF=GI:6322189 /SEG=NC_001141:-350588,353428 /DEF=Phosphatidylinositol 4,5-bisphosphate 5-phosphatase, synaptojanin-like protein with an N-terminal Sac1 domain, plays a role in phosphatidylinositol 4,5-bisphosphate homeostasis and in endocytosis; null mutation confers cold-tolerant growth /NOTE=Inp51p; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 9560389]; go_function: inositol-polyphosphate 5-phosphatase activity [goid GO:0004445] [evidence IDA] [pmid 9565610]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IGI] [pmid 9560389]; go_process: dephosphorylation [goid GO:0016311] [evidence IDA] [pmid 9565610]; go_process: endocytosis [goid GO:0006897] [evidence IGI] [pmid 9788876]; go_process: phosphatidylinositol biosynthesis [goid GO:0006661] [evidence IDA] [pmid 9560389] --- --- --- --- --- --- S0001264 // INP51 SGDID:S0001264, Chr IX from 353428-350588, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019003 // cdna:GeneFinder chromosome:SGD1:IX:350447:351490:-1 // ensembl // 11 // --- /// GENSCAN00000016474 // cdna:Genscan chromosome:SGD1:IX:350588:353428:-1 // ensembl // 11 // --- /// YIL002C // cdna:known chromosome:SGD1:IX:350588:353428:-1 gene:YIL002C // ensembl // 11 // --- --- No cerevisiae_gene -1.10679776909493 -2.58940971163529 -1.27278027822174 -2.26982048693555 1.15051552443762 Max fold change below threshold 4 2.58940971163529 Max fold change at or above threshold 0.659516746051012 -0.923767205192448 -0.783510522164378 1.04776098130581 665.525978088379 346.643803758653 0.520856908928385 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776379_at YFL010C.S1 WW domain containing protein of unknown function; binds to Mca1p, a caspase-related protease that regulates H2O2-induced apoptosis; overexpression causes Gi phase growth arrest and clonal death that is suppressed by overexpression of MCA1 2.58927114900044 193.781799316406 311.163681030273 WWM1 9269 // response to dessication // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 314.753295898438 121.560577392578 266.003021240234 307.574066162109 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL010C /GEN=WWM1 /DB_XREF=GI:18702303 /SEG=NC_001138:-115102,115737 /DEF=WW domain containing protein interacting with Metacaspase (MCA1) /NOTE=Wwm1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to dessication [goid GO:0009269] [evidence ISS] [pmid 10681550] --- --- --- --- --- --- S0001884 // WWM1 SGDID:S0001884, Chr VI from 115737-115102, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018515 // cdna:GeneFinder chromosome:SGD1:VI:115102:115737:-1 // ensembl // 11 // --- /// GENSCAN00000023233 // cdna:Genscan chromosome:SGD1:VI:115102:115737:-1 // ensembl // 11 // --- /// YFL010C // cdna:known chromosome:SGD1:VI:115102:115737:-1 gene:YFL010C // ensembl // 11 // --- S0001955 // sgd // 3 // Negative Strand Matching Probes /// YFL010W-A // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene -1.29276440266353 -2.58927114900044 1.11442716366636 -1.1832696276565 -1.02334146641786 Max fold change below threshold 4 2.58927114900044 Max fold change at or above threshold 0.692918024395753 -1.45649627154605 0.150534553156111 0.613043693994185 252.47274017334 89.8815639547092 0.356005024118641 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773941_at YIL127C.S1 Hypothetical protein 2.5891768972439 253.13304901123 705.013916015625 --- --- 5730 // nucleolus // inferred from direct assay --- 651.196716308594 251.507232666016 254.758865356445 758.831115722656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL127C /GEN=MET18 /DB_XREF=GI:6322064 /SEG=NC_001141:-117024,117644 /DEF=Hypothetical ORF /NOTE=Yil127cp; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001389 // YIL127C SGDID:S0001389, Chr IX from 117644-117024, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YIL127C // cdna:known chromosome:SGD1:IX:117024:117644:-1 gene:YIL127C // ensembl // 11 // --- --- No cerevisiae_gene 1.19042249344305 -2.5891768972439 -1.29818534390689 -2.55612975586727 1.16528707335044 Max fold change below threshold 4 2.5891768972439 Max fold change at or above threshold 0.650573678640864 -0.860131482737078 -0.847841296256389 1.0573991003526 479.073482513428 264.571468914566 0.552256550553599 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773954_at SPAC16C9.04c.S1 --- 2.58813171418327 --- --- --- --- 9.05115413665771 23.4255790710449 14.0404872894287 10.7301139831543 0.0561522990465164 0.111571997404099 0.0107421996071935 0.0561522990465164 M A P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16C9.04c /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPAC16C9.04c // |||CCR4-Not complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.350519300079 2.58813171418327 1.94587297645315 1.55123723200823 1.18549676882605 Max fold change below threshold 4 2.58813171418327 Max fold change at or above threshold MAAPPM No 4 0 MAPM 1 1 2 No No x = 1
AFFX-r2-Sp-5.8SrRNA_at AFFX-r2-Sp-5.8SrRNA --- 2.58796878101541 --- --- --- --- 43.0455894470215 49.3501510620117 39.2338485717773 16.9381828308105 0.014160200022161 0.0107421996071935 0.030273400247097 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=Z19578 gi|288694:3725-3889 S.pombe gene encoding 18S, 5.8S, and 28S ribosomal RNA --- --- --- --- --- --- SPRRNA.22 // |||18S, 5.8S, and 28S rRNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPRRNA.23 // |||18S, 5.8S, and 28S rRNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPRRNA.08 // |||18S, 5.8S, and 28S ribosomal RNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- AFFX_control No -2.58796878101541 1.14646242962359 -2.08025911839352 -1.09715439636952 -2.54133456209491 Max fold change below threshold 4 2.58796878101541 Max fold change at or above threshold PPPPPP No 3 0 PPPP 0 4 0 No No 3 < x
1779718_at YPL123C.S1 RNAse; member of the T(2) family of endoribonucleases 2.586942582781 744.764678955078 1279.30731201172 RNY1 902 // cellular morphogenesis // inferred from mutant phenotype 5576 // extracellular region // inferred from direct assay 4521 // endoribonuclease activity // inferred from direct assay 1234.82763671875 660.94287109375 828.586486816406 1323.78698730469 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL123C /GEN=RNY1 /DB_XREF=GI:6325134 /SEG=NC_001148:-317640,318944 /DEF=RNAse; member of the T(2) family of endoribonucleases /NOTE=Rny1p; go_component: extracellular [goid GO:0005576] [evidence IDA] [pmid 11158587]; go_function: endoribonuclease activity [goid GO:0004521] [evidence IDA] [pmid 11158587]; go_process: cellular morphogenesis [goid GO:0000902] [evidence IMP] [pmid 11158587] --- --- --- --- scop // a.4.5.Forkhead DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Forkhead DNA-binding domain // 1.10000002384186 --- S0006044 // RNY1 SGDID:S0006044, Chr XVI from 318944-317640, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017096 // cdna:Genscan chromosome:SGD1:XVI:317640:318155:-1 // ensembl // 9 // --- /// GENEFINDER00000020754 // cdna:GeneFinder chromosome:SGD1:XVI:317640:318155:-1 // ensembl // 9 // --- /// YPL123C // cdna:known chromosome:SGD1:XVI:317640:318944:-1 gene:YPL123C // ensembl // 11 // --- --- No cerevisiae_gene -2.586942582781 -1.86828195101842 1.33267132661401 -1.49028213272365 1.07204191738235 Max fold change below threshold 4 2.586942582781 Max fold change at or above threshold 0.700172456557094 -1.10338850246415 -0.576531024347868 0.979747070254927 1012.0359954834 318.195380507923 0.314411129572458 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769992_at YKR086W.S1 RNA helicase in the DEAH-box family involved in the second catalytic step of splicing, exhibits ATP-dependent RNA unwinding activity 2.58690999521379 218.827842712402 564.450347900391 PRP16 358 // formation of catalytic U2-type spliceosome for second transesterification step // traceable author statement 5681 // spliceosome complex // traceable author statement 4004 // ATP-dependent RNA helicase activity // traceable author statement /// 31202 // RNA splicing factor activity, transesterification mechanism // traceable author statement 539.453430175781 208.531967163086 229.123718261719 589.447265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR086W /GEN=PRP16 /DB_XREF=GI:6322939 /SEG=NC_001143:+599499,602714 /DEF=RNA helicase in the DEAH-box family involved in the second catalytic step of splicing, exhibits ATP-dependent RNA unwinding activity /NOTE=Prp16p; go_component: spliceosome complex [goid GO:0005681] [evidence TAS] [pmid 9476892]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 9476892]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence TAS] [pmid 9476892]; go_process: formation of catalytic U2-type spliceosome for second transesterification step [goid GO:0000358] [evidence TAS] --- --- --- --- --- --- S0001794 // PRP16 SGDID:S0001794, Chr XI from 599499-602714, Verified ORF // sgd // 11 // --- /// GENSCAN00000018488 // cdna:Genscan chromosome:SGD1:XI:599499:602735:1 // ensembl // 11 // --- /// GENEFINDER00000023075 // cdna:GeneFinder chromosome:SGD1:XI:599499:602735:1 // ensembl // 11 // --- /// YKR086W // cdna:known chromosome:SGD1:XI:599499:602714:1 gene:YKR086W // ensembl // 11 // --- --- No cerevisiae_gene -1.71045317094256 -2.58690999521379 -1.13540613606354 -2.35441984910347 1.09267497925248 Max fold change below threshold 4 2.58690999521379 Max fold change at or above threshold 0.736265049613886 -0.912058894059358 -0.809491124447104 0.985284968892576 391.639095306396 200.762395209309 0.512620924762999 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776931_x_at YLL064C.S1 Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth /// Hypothetical protein /// Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 2.58575527884326 121.375427246094 109.208477020264 PAU4 /// PAU6 /// PAU1 /// PAU2 /// DAN3 --- 9277 // cell wall (sensu Fungi) // inferred from sequence similarity --- 109.153289794922 137.369781494141 105.381072998047 109.263664245605 0.00585938012227416 0.00195312988944352 0.00585938012227416 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL064C /DB_XREF=GI:6322964 /SEG=NC_001144:-13083,13445 /DEF=Hypothetical ORF /NOTE=Yll064cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003987 // YLL064C SGDID:S0003987, Chr XII from 13445-13083, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0005359 // PAU6 SGDID:S0005359, Chr XIV from 781916-782278, Verified ORF // sgd // 11 // --- /// GENSCAN00000017642 // cdna:Genscan chromosome:SGD1:XII:13083:13445:-1 // ensembl // 11 // --- /// GENEFINDER00000024911 // cdna:GeneFinder chromosome:SGD1:XII:13083:13445:-1 // ensembl // 11 // --- /// GENSCAN00000020101 // cdna:Genscan chromosome:SGD1:XIV:781916:782278:1 // ensembl // 11 // --- /// GENEFINDER00000020637 // cdna:GeneFinder chromosome:SGD1:XIV:781916:782278:1 // ensembl // 11 // --- /// YLL064C // cdna:known chromosome:SGD1:XII:13083:13445:-1 gene:YLL064C // ensembl // 11 // --- /// YNR076W // cdna:known chromosome:SGD1:XIV:781916:782278:1 gene:YNR076W // ensembl // 11 // --- S0004453 // sgd // 7 // Cross Hyb Matching Probes /// S0005521 // sgd // 8 // Cross Hyb Matching Probes /// GENSCAN00000018169 // ensembl // 7 // Cross Hyb Matching Probes /// GENEFINDER00000024597 // ensembl // 7 // Cross Hyb Matching Probes /// GENSCAN00000017342 // ensembl // 8 // Cross Hyb Matching Probes /// GENEFINDER00000022652 // ensembl // 8 // Cross Hyb Matching Probes /// YLR461W // ensembl // 7 // Cross Hyb Matching Probes /// YOL161C // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -2.58575527884326 1.25850335571408 -1.03547180714074 -1.03579596116795 1.0010111875775 Max fold change below threshold 4 2.58575527884326 Max fold change at or above threshold -0.413969054093729 1.48884848740442 -0.668353630601036 -0.406525802709654 115.291952133179 14.8287952385613 0.128619517357395 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1776938_at SPCC1884.02.S1 --- 2.58568367228559 --- --- --- --- 6.19599199295044 4.85306978225708 8.40144348144531 4.72737550735474 0.129638999700546 0.303710997104645 0.0676269978284836 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1884.02 /GEN=nic1 /DEF=NiCoT heavy metal ion transporter --- --- --- --- --- --- SPCC1884.02 // |nic1|SPCC757.01|NiCoT heavy metal ion transporter|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.58568367228559 -1.27671603149065 1.26217111873022 1.35594808563409 -1.31066211755569 Max fold change below threshold 4 2.58568367228559 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1774510_at SPCC794.07.S1 --- 2.58408421490426 --- --- --- --- 11.9928846359253 8.70502853393555 7.22191715240479 4.64105796813965 0.149657994508743 0.129638999700546 0.274170011281967 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC794.07 /DEF=dihydrolipoamide S-acetyltransferase activity (predicted) --- --- --- --- --- --- SPCC794.07 // |||dihydrolipoamide S-acetyltransferase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.86274498476677 -1.37769618895245 -1.28547933728685 -1.66062340273896 -2.58408421490426 Max fold change below threshold 4 2.58408421490426 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778275_at YHR196W.S1 Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA 2.58404617748029 210.534461975098 531.284149169922 UTP9 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction 30515 // snoRNA binding // inferred from physical interaction 506.554748535156 225.037307739258 196.031616210938 556.013549804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR196W /GEN=UTP9 /DB_XREF=GI:6321990 /SEG=NC_001140:+491929,493656 /DEF=Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA /NOTE=Utp9p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: snoRNA binding [goid GO:0030515] [evidence IPI] [pmid 12068309]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP,IPI] [pmid 12068309] --- --- --- --- --- --- S0001239 // UTP9 SGDID:S0001239, Chr VIII from 491930-493657, Verified ORF // sgd // 11 // --- /// GENSCAN00000016718 // cdna:Genscan chromosome:SGD1:VIII:491930:493657:1 // ensembl // 11 // --- /// GENEFINDER00000020255 // cdna:GeneFinder chromosome:SGD1:VIII:491930:493657:1 // ensembl // 11 // --- /// YHR196W // cdna:known chromosome:SGD1:VIII:491930:493657:1 gene:YHR196W // ensembl // 11 // --- --- No cerevisiae_gene 1.73485289827822 -2.2509811978469 -1.03264395160776 -2.58404617748029 1.09763762241407 Max fold change below threshold 4 2.58404617748029 Max fold change at or above threshold 0.726704064490485 -0.781491596071995 -0.936886082363674 0.991673613945184 370.90930557251 186.658434417526 0.503245487813827 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773438_at SPBC1773.01.S1 --- 2.58327334776292 --- --- --- --- 1.49070906639099 1.12815356254578 0.722659409046173 0.994746387004852 0.533936023712158 0.696289002895355 0.533936023712158 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1773.01 /DEF=WD repeat protein --- --- --- --- --- --- SPBC1773.01 // |||striatin homolog|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.58327334776292 -1.32137070331727 1.04605559355821 -2.06281001496757 -1.49858203645199 Max fold change below threshold 0 2.58327334776292 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770812_at YJL056C.S1 Zinc-regulated transcription factor, binds to zinc-responsive promoter elements to induce transcription of certain genes in the presence of zinc; regulates its own transcription; contains seven zinc-finger domains 2.58322494955377 198.478721618652 475.047836303711 ZAP1 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 6882 // zinc ion homeostasis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 3677 // DNA binding // inferred from direct assay /// 3704 // specific RNA polymerase II transcription factor activity // inferred from mutant phenotype /// 3704 // specific RNA polymerase II transcription factor activity // inferred from sequence similarity 467.236358642578 216.084167480469 180.873275756836 482.859313964844 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL056C /GEN=ZAP1 /DB_XREF=GI:6322405 /SEG=NC_001142:-330347,332989 /DEF=Zinc-regulated transcription factor, binds to zinc-responsive promoter elements to induce transcription of certain genes in the presence of zinc; regulates its own transcription; contains seven zinc-finger domains /NOTE=Zap1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10899124]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 12549926]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IMP,ISS] [pmid 9271382]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP] [pmid 9271382]; go_process: zinc ion homeostasis [goid GO:0006882] [evidence IMP] [pmid 9271382] --- --- --- --- --- --- S0003592 // ZAP1 SGDID:S0003592, Chr X from 332989-330347, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024469 // cdna:GeneFinder chromosome:SGD1:X:328034:332989:-1 // ensembl // 10 // --- /// GENSCAN00000024097 // cdna:Genscan chromosome:SGD1:X:330347:332989:-1 // ensembl // 11 // --- /// YJL056C // cdna:known chromosome:SGD1:X:330347:332989:-1 gene:YJL056C // ensembl // 11 // --- --- No cerevisiae_gene 1.30725145605265 -2.16228872337355 -1.37528816517829 -2.58322494955377 1.03343694263788 Max fold change below threshold 4 2.58322494955377 Max fold change at or above threshold 0.813170711014156 -0.75213001124032 -0.971581149576802 0.910540449802966 336.763278961182 160.449802131554 0.476446846064974 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777960_at SPBC146.03c.S1 --- 2.58322174114234 --- --- --- --- 7.77548694610596 4.36954689025879 4.76148700714111 3.00999593734741 0.129638999700546 0.366210997104645 0.334473013877869 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC146.03c /GEN=cut3 /DEF=condensin subunit --- --- --- --- --- --- SPBC146.03c // |cut3|smc4|condensin subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.02478924817876 -1.77947213781826 1.26663014925816 -1.63299551893023 -2.58322174114234 Max fold change below threshold 4 2.58322174114234 Max fold change at or above threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1769922_at SPBC115.02c.S1 --- 2.58309561367008 --- --- --- --- 9.34202861785889 10.0062484741211 5.17050981521606 3.61660194396973 0.111571997404099 0.274170011281967 0.432372987270355 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC115.02c /DEF=ATPase (AFG1 family) --- --- --- --- --- --- SPBC115.02c // |||ATPase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.33696598081094 1.07110017357391 -1.83875887215417 -1.80679061673312 -2.58309561367008 Max fold change below threshold 4 2.58309561367008 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775386_at YML116W.S1 Multidrug efflux pump of the major facilitator superfamily, required for resistance to aminotriazole and 4-nitroquinoline-N-oxide 2.58294428504859 182.540893554688 444.43733215332 ATR1 6855 // multidrug transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from mutant phenotype 15559 // multidrug efflux pump activity // inferred from mutant phenotype 435.071929931641 168.440307617188 196.641479492188 453.802734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML116W /GEN=ATR1 /DB_XREF=GI:6323520 /SEG=NC_001145:+38196,39824 /DEF=Multidrug efflux pump of the major facilitator superfamily, required for resistance to aminotriazole and 4-nitroquinoline-N-oxide /NOTE=Atr1p; go_component: plasma membrane [goid GO:0005886] [evidence IMP,ISS] [pmid 2123132]; go_function: multidrug efflux pump activity [goid GO:0015559] [evidence IMP] [pmid 2123132]; go_process: multidrug transport [goid GO:0006855] [evidence IMP] [pmid 2123132] --- --- --- --- --- S0004584 // span:137-159,169-191,200-222,232-254,267-284,294-316,337-356,366-388,395-417,427-449,462-484,504-526 // numtm:12 S0004584 // ATR1 SGDID:S0004584, Chr XIII from 38196-39824, Verified ORF // sgd // 11 // --- /// GENSCAN00000018619 // cdna:Genscan chromosome:SGD1:XIII:38814:39824:1 // ensembl // 11 // --- /// YML116W // cdna:known chromosome:SGD1:XIII:38196:39824:1 gene:YML116W // ensembl // 11 // --- --- No cerevisiae_gene -1.27632365952747 -2.58294428504859 -1.27015127308805 -2.21251350963786 1.04305220161251 Max fold change below threshold 4 2.58294428504859 Max fold change at or above threshold 0.800749148682424 -0.955297056792304 -0.769563045082959 0.924110953192839 313.489112854004 151.836336357888 0.484343251909357 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775150_at YPL211W.S1 Nucleolar protein required for 60S ribosome subunit biogenesis, constituent of 66S pre-ribosomal particles; physically interacts with Nop8p and the exosome subunit Rrp43p 2.58280324776452 207.757217407227 546.92985534668 NIP7 27 // ribosomal large subunit assembly and maintenance // traceable author statement /// 6364 // rRNA processing // traceable author statement /// 42273 // ribosomal large subunit biogenesis // inferred from physical interaction 5730 // nucleolus // traceable author statement /// 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement --- 507.196075439453 203.826416015625 211.688018798828 586.663635253906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL211W /GEN=NIP7 /DB_XREF=GI:6325045 /SEG=NC_001148:+153494,154039 /DEF=Nip7p is required for 60S ribosome subunit biogenesis /NOTE=Nip7p; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9891085]; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 9891085]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: rRNA processing [goid GO:0006364] [evidence TAS] [pmid 10690410]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0006132 // NIP7 SGDID:S0006132, Chr XVI from 153494-154039, Verified ORF // sgd // 11 // --- /// YPL211W // cdna:known chromosome:SGD1:XVI:153494:154039:1 gene:YPL211W // ensembl // 11 // --- --- No cerevisiae_gene 2.58280324776452 -2.48837263272378 -1.3198905923076 -2.39596023581029 1.1566801551956 Max fold change below threshold 4 2.58280324776452 Max fold change at or above threshold 0.654114244654871 -0.874068546824558 -0.834466807779344 1.05442110994903 377.343536376953 198.516604895241 0.52608985117723 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771809_at YJL052C-A.S1 Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 2.58253226968323 26.8721418380737 15.1738786697388 --- --- --- --- 12.8549289703369 20.5460147857666 33.1982688903809 17.4928283691406 0.171387001872063 0.194580003619194 0.0461426004767418 0.0805663987994194 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL052C-A /GEN=PEP8 /DB_XREF=GI:13129173 /SEG=NC_001142:-337800,337919 /DEF=Hypothetical ORF identified by homology. See FEBS Letters [2000] 487:31-36. /NOTE=Yjl052c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007610 // YJL052C-A SGDID:S0007610, Chr X from 337919-337800, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YJL052C-A // cdna:known chromosome:SGD1:X:337800:337919:-1 gene:YJL052C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.86945458133429 1.59829858517127 1.01265608110765 2.58253226968323 1.36078763324992 Max fold change below threshold 4 2.58253226968323 Max fold change at or above threshold -0.937675133890534 -0.0547578769022207 1.39768898909872 -0.405255978305966 21.0230102539063 8.7109927397551 0.414355158207495 APAPPA No 4 0 AAPA 3 1 0 No No x = 1
1777645_at YDR366C.S1 Hypothetical protein 2.58168388208914 101.637428283691 198.022216796875 --- --- --- --- 194.873977661133 127.791572570801 75.483283996582 201.170455932617 0.000244141003349796 0.00585938012227416 0.018554700538516 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR366C /GEN=ESF1 /DB_XREF=GI:6320574 /SEG=NC_001136:-1212426,1212824 /DEF=Hypothetical ORF /NOTE=Ydr366cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002774 // span:4-26,80-99,114-131 // numtm:3 S0002774 // YDR366C SGDID:S0002774, Chr IV from 1212826-1212428, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDR366C // cdna:known chromosome:SGD1:IV:1212428:1212826:-1 gene:YDR366C // ensembl // 11 // --- GENEFINDER00000023449 // ensembl // 1 // Cross Hyb Matching Probes /// S0007239 // sgd // 1 // Negative Strand Matching Probes /// S0001322 // sgd // 1 // Negative Strand Matching Probes /// S0028857 // sgd // 2 // Negative Strand Matching Probes /// AY169693 // gb // 1 // Negative Strand Matching Probes /// K00949 // gb // 1 // Negative Strand Matching Probes /// K00950 // gb // 1 // Negative Strand Matching Probes /// K00951 // gb // 1 // Negative Strand Matching Probes /// YBL107W-A // ensembl // 1 // Negative Strand Matching Probes /// YIL060W // ensembl // 1 // Negative Strand Matching Probes /// YER138W-A // ensembl // 1 // Negative Strand Matching Probes /// YHR145C // ensembl // 1 // Negative Strand Matching Probes /// YOR192C-C // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene -1.42781098945917 -1.52493606378594 1.14188293544388 -2.58168388208914 1.03231051342542 Max fold change below threshold 4 2.58168388208914 Max fold change at or above threshold 0.755014969507146 -0.369397729495826 -1.24617165936258 0.860554419351255 149.829822540283 59.6599497229217 0.398184745275805 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1777208_at SPBC23E6.02.S1 --- 2.58148398249499 --- --- --- --- 0.211621075868607 0.327331781387329 0.260774552822113 0.0526303313672543 0.962401986122131 0.850341975688934 0.985840022563934 0.96044921875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC23E6.02 /DEF=zinc finger protein --- --- --- --- --- --- SPBC23E6.02 // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.58148398249499 1.54678252174923 1.08872335256819 1.23227117975728 -2.11621075868607 Max fold change below threshold 0 2.58148398249499 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775180_s_at YAR010C.S1 TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// Identified by expression profiling and mass spectrometry /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// Ty ORF /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition 2.5813738578478 347.20654296875 185.912422180176 --- 6319 // Ty element transposition // inferred from sequence similarity 943 // retrotransposon nucleocapsid // inferred from sequence similarity 3723 // RNA binding // inferred from sequence similarity /// 3887 // DNA-directed DNA polymerase activity // inferred from sequence similarity /// 3964 // RNA-directed DNA polymerase activity // inferred from sequence similarity /// 4540 // ribonuclease activity // inferred from sequence similarity /// 5515 // protein binding // inferred from sequence similarity /// 8233 // peptidase activity // inferred from sequence similarity 173.869567871094 350.902099609375 343.510986328125 197.955276489258 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR010C /GEN=SEN34 /DB_XREF=GI:6319324 /SEG=NC_001133:-164547,165869 /DEF=TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /NOTE=Yar010cp; go_component: retrotransposon nucleocapsid [goid GO:0000943] [evidence ISS] [pmid 9582191]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 9582191]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 9582191]; go_process: Ty element transposition [goid GO:0006319] [evidence ISS] [pmid 9582191] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.60000002384186 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.70000004768372 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.79999995231628 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.5 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.59999990463257 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.70000004768372 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.79999995231628 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.90000009536743 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.69999980926514 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 6.30000019073486 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 7.90000009536743 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 9.19999980926514 --- S0000068 // YAR010C SGDID:S0000068, Chr I from 165867-164545, reverse complement, Ty ORF // sgd // 11 // --- /// S0002154 // YBR012W-A SGDID:S0002154, Chr II from 259867-261189, Ty ORF // sgd // 11 // --- /// S0002155 // YBR012W-B SGDID:S0002155, Chr II from 259867-261171,261173-265138, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007390 // YDR098C-A SGDID:S0007390, Chr IV from 651121-649799, reverse complement, Ty ORF // sgd // 11 // --- /// S0007391 // YDR098C-B SGDID:S0007391, Chr IV from 651121-649817,649815-645853, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007409 // YDR210C-C SGDID:S0007409, Chr IV from 883922-882600, reverse complement, Ty ORF // sgd // 11 // --- /// S0007410 // YDR210C-D SGDID:S0007410, Chr IV from 883922-882618,882616-878654, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007394 // YDR261C-C SGDID:S0007394, Chr IV from 992343-991021, reverse complement, Ty ORF // sgd // 11 // --- /// S0007395 // YDR261C-D SGDID:S0007395, Chr IV from 992343-991039,991037-987528, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007398 // YDR316W-A SGDID:S0007398, Chr IV from 1096059-1097381, Ty ORF // sgd // 11 // --- /// S0007399 // YDR316W-B SGDID:S0007399, Chr IV from 1096059-1097363,1097365-1101327, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007400 // YDR365W-A SGDID:S0007400, Chr IV from 1206987-1208309, Ty ORF // sgd // 11 // --- /// S0007401 // YDR365W-B SGDID:S0007401, Chr IV from 1206987-1208291,1208293-1212255, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007402 // YER137C-A SGDID:S0007402, Chr V from 449020-447698, reverse complement, Ty ORF // sgd // 11 // --- /// S0000940 // YER138C SGDID:S0000940, Chr V from 449020-447719,447717-443752, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007403 // YER159C-A SGDID:S0007403, Chr V from 498119-496797, reverse complement, Ty ORF // sgd // 11 // --- /// S0000962 // YER160C SGDID:S0000962, Chr V from 498119-496818,496816-492851, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007405 // YGR027W-A SGDID:S0007405, Chr VII from 536061-537383, Ty ORF // sgd // 11 // --- /// S0007406 // YGR027W-B SGDID:S0007406, Chr VII from 536061-537365,537367-541329, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007407 // YGR038C-A SGDID:S0007407, Chr VII from 567471-566149, reverse complement, Ty ORF // sgd // 11 // --- /// S0007408 // YGR038C-B SGDID:S0007408, Chr VII from 567471-566167,566165-562203, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007367 // YGR161C-C SGDID:S0007367, Chr VII from 823020-821698, reverse complement, Ty ORF // sgd // 11 // --- /// S0007368 // YGR161C-D SGDID:S0007368, Chr VII from 823020-821716,821714-817752, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0003534 // YHR214C-B SGDID:S0003534, Chr VIII from 549345-547930,547928-543963, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007421 // YHR214C-C SGDID:S0007421, Chr VIII from 549345-547909, reverse complement, Ty ORF // sgd // 11 // --- /// S0003787 // YJR026W SGDID:S0003787, Chr X from 472674-473996, Ty ORF // sgd // 11 // --- /// S0003788 // YJR027W SGDID:S0003788, Chr X from 472674-473975,473977-477942, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0003789 // YJR028W SGDID:S0003789, Chr X from 478258-479580, Ty ORF // sgd // 11 // --- /// S0003790 // YJR029W SGDID:S0003790, Chr X from 478258-479558,479560-483526, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007373 // YLR157C-A SGDID:S0007373, Chr XII from 481602-480280, reverse complement, Ty ORF // sgd // 11 // --- /// S0007374 // YLR157C-B SGDID:S0007374, Chr XII from 481602-480298,480296-476334, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007375 // YLR227W-A SGDID:S0007375, Chr XII from 593440-594762, Ty ORF // sgd // 11 // --- /// S0007376 // YLR227W-B SGDID:S0007376, Chr XII from 593440-594744,594746-598708, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007377 // YLR256W-A SGDID:S0007377, Chr XII from 651119-652441, Ty ORF // sgd // 11 // --- /// S0004503 // YML039W SGDID:S0004503, Chr XIII from 196628-197932,197934-201896, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0004504 // YML040W SGDID:S0004504, Chr XIII from 196628-197950, Ty ORF // sgd // 11 // --- /// S0004508 // YML045W SGDID:S0004508, Chr XIII from 184461-185765,185767-189729, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007381 // YML045W-A SGDID:S0007381, Chr XIII from 184461-185783, Ty ORF // sgd // 11 // --- /// S0004653 // YMR050C SGDID:S0004653, Chr XIII from 378324-377020,377018-373056, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0004654 // YMR051C SGDID:S0004654, Chr XIII from 378324-377002, reverse complement, Ty ORF // sgd // 11 // --- /// S0007384 // YNL054W-A SGDID:S0007384, Chr XIV from 519455-520777, Ty ORF // sgd // 11 // --- /// S0007385 // YNL054W-B SGDID:S0007385, Chr XIV from 519455-520759,520761-524705, one base removed to allow translational frameshift, Pseudogene Ty ORF // sgd // 11 // --- /// S0007349 // YOL103W-A SGDID:S0007349, Chr XV from 117999-119321, Ty ORF // sgd // 11 // --- /// S0007350 // YOL103W-B SGDID:S0007350, Chr XV from 117999-119303,119305-123267, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007351 // YOR142W-A SGDID:S0007351, Chr XV from 595112-596434, Ty ORF // sgd // 11 // --- /// S0007352 // YOR142W-B SGDID:S0007352, Chr XV from 595112-596416,596418-600380, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007357 // YPL257W-A SGDID:S0007357, Chr XVI from 56748-58070, Ty ORF // sgd // 11 // --- /// S0007358 // YPL257W-B SGDID:S0007358, Chr XVI from 56748-58052,58054-62016, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007359 // YPR137C-A SGDID:S0007359, Chr XVI from 810265-808943, reverse complement, Ty ORF // sgd // 11 // --- /// S0007360 // YPR137C-B SGDID:S0007360, Chr XVI from 810265-808961,808959-804997, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007361 // YPR158C-C SGDID:S0007361, Chr XVI from 856253-854931, reverse complement, Ty ORF // sgd // 11 // --- /// S0007362 // YPR158C-D SGDID:S0007362, Chr XVI from 856253-854949,854947-850985, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007363 // YPR158W-A SGDID:S0007363, Chr XVI from 844705-846027, Ty ORF // sgd // 11 // --- /// S0007364 // YPR158W-B SGDID:S0007364, Chr XVI from 844705-846009,846011-849976, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// GENEFINDER00000018244 // cdna:GeneFinder chromosome:SGD1:I:164545:165867:-1 // ensembl // 11 // --- /// GENSCAN00000020385 // cdna:Genscan chromosome:SGD1:I:164545:165867:-1 // ensembl // 11 // --- /// GENSCAN00000021148 // cdna:Genscan chromosome:SGD1:II:259867:261189:1 // ensembl // 11 // --- /// GENEFINDER00000022194 // cdna:GeneFinder chromosome:SGD1:II:259867:261189:1 // ensembl // 11 // --- /// GENEFINDER00000023707 // cdna:GeneFinder chromosome:SGD1:IV:649799:651121:-1 // ensembl // 11 // --- /// GENSCAN00000025170 // cdna:Genscan chromosome:SGD1:IV:649799:651121:-1 // ensembl // 11 // --- /// GENEFINDER00000023695 // cdna:GeneFinder chromosome:SGD1:IV:882600:883922:-1 // ensembl // 11 // --- /// GENSCAN00000025260 // cdna:Genscan chromosome:SGD1:IV:882600:883922:-1 // ensembl // 11 // --- /// GENEFINDER00000023834 // cdna:GeneFinder chromosome:SGD1:IV:991021:992343:-1 // ensembl // 11 // --- /// GENSCAN00000025305 // cdna:Genscan chromosome:SGD1:IV:991021:992343:-1 // ensembl // 11 // --- /// GENEFINDER00000023950 // cdna:GeneFinder chromosome:SGD1:IV:1096059:1097381:1 // ensembl // 11 // --- /// GENSCAN00000025345 // cdna:Genscan chromosome:SGD1:IV:1096059:1097381:1 // ensembl // 11 // --- /// GENEFINDER00000023692 // cdna:GeneFinder chromosome:SGD1:IV:1206987:1208309:1 // ensembl // 11 // --- /// GENSCAN00000025389 // cdna:Genscan chromosome:SGD1:IV:1206987:1208309:1 // ensembl // 11 // --- /// GENSCAN00000016917 // cdna:Genscan chromosome:SGD1:V:447698:449020:-1 // ensembl // 11 // --- /// GENEFINDER00000019617 // cdna:GeneFinder chromosome:SGD1:V:447698:449020:-1 // ensembl // 11 // --- /// GENSCAN00000016939 // cdna:Genscan chromosome:SGD1:V:496797:498119:-1 // ensembl // 11 // --- /// GENEFINDER00000019706 // cdna:GeneFinder chromosome:SGD1:V:496797:498119:-1 // ensembl // 11 // --- /// GENSCAN00000019360 // cdna:Genscan chromosome:SGD1:VII:536061:537383:1 // ensembl // 11 // --- /// GENEFINDER00000021484 // cdna:GeneFinder chromosome:SGD1:VII:536061:537383:1 // ensembl // 11 // --- /// GENSCAN00000019369 // cdna:Genscan chromosome:SGD1:VII:566149:567471:-1 // ensembl // 11 // --- /// GENEFINDER00000021430 // cdna:GeneFinder chromosome:SGD1:VII:566149:567471:-1 // ensembl // 11 // --- /// GENSCAN00000019467 // cdna:Genscan chromosome:SGD1:VII:821698:823020:-1 // ensembl // 11 // --- /// GENEFINDER00000021620 // cdna:GeneFinder chromosome:SGD1:VII:821698:823020:-1 // ensembl // 11 // --- /// GENSCAN00000016738 // cdna:Genscan chromosome:SGD1:VIII:547909:549345:-1 // ensembl // 11 // --- /// GENEFINDER00000020141 // cdna:GeneFinder chromosome:SGD1:VIII:547909:549345:-1 // ensembl // 11 // --- /// GENSCAN00000024152 // cdna:Genscan chromosome:SGD1:X:472674:473996:1 // ensembl // 11 // --- /// GENEFINDER00000024350 // cdna:GeneFinder chromosome:SGD1:X:472674:473996:1 // ensembl // 11 // --- /// GENSCAN00000024154 // cdna:Genscan chromosome:SGD1:X:478258:479580:1 // ensembl // 11 // --- /// GENEFINDER00000024413 // cdna:GeneFinder chromosome:SGD1:X:478258:479580:1 // ensembl // 11 // --- /// GENSCAN00000017849 // cdna:Genscan chromosome:SGD1:XII:219387:220709:-1 // ensembl // 11 // --- /// GENEFINDER00000024908 // cdna:GeneFinder chromosome:SGD1:XII:219387:220709:-1 // ensembl // 11 // --- /// GENSCAN00000017945 // cdna:Genscan chromosome:SGD1:XII:480280:481602:-1 // ensembl // 11 // --- /// GENEFINDER00000024743 // cdna:GeneFinder chromosome:SGD1:XII:480280:481602:-1 // ensembl // 11 // --- /// GENSCAN00000017997 // cdna:Genscan chromosome:SGD1:XII:593440:594762:1 // ensembl // 11 // --- /// GENEFINDER00000024606 // cdna:GeneFinder chromosome:SGD1:XII:593440:594762:1 // ensembl // 11 // --- /// GENSCAN00000018018 // cdna:Genscan chromosome:SGD1:XII:651119:652441:1 // ensembl // 11 // --- /// GENEFINDER00000024856 // cdna:GeneFinder chromosome:SGD1:XII:651119:652441:1 // ensembl // 11 // --- /// GENSCAN00000018679 // cdna:Genscan chromosome:SGD1:XIII:184461:185783:1 // ensembl // 11 // --- /// GENEFINDER00000022099 // cdna:GeneFinder chromosome:SGD1:XIII:184461:185783:1 // ensembl // 11 // --- /// GENSCAN00000018684 // cdna:Genscan chromosome:SGD1:XIII:196628:197950:1 // ensembl // 11 // --- /// GENEFINDER00000021960 // cdna:GeneFinder chromosome:SGD1:XIII:196628:197950:1 // ensembl // 11 // --- /// GENSCAN00000018758 // cdna:Genscan chromosome:SGD1:XIII:377002:378324:-1 // ensembl // 11 // --- /// GENEFINDER00000021930 // cdna:GeneFinder chromosome:SGD1:XIII:377002:378324:-1 // ensembl // 11 // --- /// GENSCAN00000019989 // cdna:Genscan chromosome:SGD1:XIV:519455:520777:1 // ensembl // 11 // --- /// GENEFINDER00000020643 // cdna:GeneFinder chromosome:SGD1:XIV:519455:520777:1 // ensembl // 11 // --- /// GENSCAN00000017382 // cdna:Genscan chromosome:SGD1:XV:117999:119321:1 // ensembl // 11 // --- /// GENEFINDER00000022625 // cdna:GeneFinder chromosome:SGD1:XV:117999:119321:1 // ensembl // 11 // --- /// GENSCAN00000017568 // cdna:Genscan chromosome:SGD1:XV:595112:596434:1 // ensembl // 11 // --- /// GENEFINDER00000022872 // cdna:GeneFinder chromosome:SGD1:XV:595112:596434:1 // ensembl // 11 // --- /// GENSCAN00000016987 // cdna:Genscan chromosome:SGD1:XVI:56748:58070:1 // ensembl // 11 // --- /// GENEFINDER00000020758 // cdna:GeneFinder chromosome:SGD1:XVI:56748:58070:1 // ensembl // 11 // --- /// GENSCAN00000017288 // cdna:Genscan chromosome:SGD1:XVI:808943:810265:-1 // ensembl // 11 // --- /// GENEFINDER00000020998 // cdna:GeneFinder chromosome:SGD1:XVI:808943:810265:-1 // ensembl // 11 // --- /// GENSCAN00000017302 // cdna:Genscan chromosome:SGD1:XVI:844705:846027:1 // ensembl // 11 // --- /// GENEFINDER00000020979 // cdna:GeneFinder chromosome:SGD1:XVI:844705:846027:1 // ensembl // 11 // --- /// GENSCAN00000017305 // cdna:Genscan chromosome:SGD1:XVI:854931:856253:-1 // ensembl // 11 // --- /// GENEFINDER00000020825 // cdna:GeneFinder chromosome:SGD1:XVI:854931:856253:-1 // ensembl // 11 // --- /// YAR010C // cdna:known chromosome:SGD1:I:164545:165867:-1 gene:YAR010C // ensembl // 11 // --- /// YBR012W-A // cdna:known chromosome:SGD1:II:259867:261189:1 gene:YBR012W-A // ensembl // 11 // --- /// YBR012W-B // cdna:known chromosome:SGD1:II:259867:265138:1 gene:YBR012W-B // ensembl // 11 // --- /// YDR098C-B // cdna:known chromosome:SGD1:IV:645853:651121:-1 gene:YDR098C-B // ensembl // 11 // --- /// YDR098C-A // cdna:known chromosome:SGD1:IV:649799:651121:-1 gene:YDR098C-A // ensembl // 11 // --- /// YDR210C-D // cdna:known chromosome:SGD1:IV:878654:883922:-1 gene:YDR210C-D // ensembl // 11 // --- /// YDR210C-C // cdna:known chromosome:SGD1:IV:882600:883922:-1 gene:YDR210C-C // ensembl // 11 // --- /// YDR261C-D // cdna:known chromosome:SGD1:IV:987528:992343:-1 gene:YDR261C-D // ensembl // 11 // --- /// YDR261C-C // cdna:known chromosome:SGD1:IV:991021:992343:-1 gene:YDR261C-C // ensembl // 11 // --- /// YDR316W-A // cdna:known chromosome:SGD1:IV:1096059:1097381:1 gene:YDR316W-A // ensembl // 11 // --- /// YDR316W-B // cdna:known chromosome:SGD1:IV:1096059:1101327:1 gene:YDR316W-B // ensembl // 11 // --- /// YDR365W-B // cdna:known chromosome:SGD1:IV:1206987:1212255:1 gene:YDR365W-B // ensembl // 11 // --- /// YDR365W-A // cdna:known chromosome:SGD1:IV:1206987:1208309:1 gene:YDR365W-A // ensembl // 11 // --- /// YER138C // cdna:known chromosome:SGD1:V:443752:449020:-1 gene:YER138C // ensembl // 11 // --- /// YER137C-A // cdna:known chromosome:SGD1:V:447698:449020:-1 gene:YER137C-A // ensembl // 11 // --- /// YER160C // cdna:known chromosome:SGD1:V:492851:498119:-1 gene:YER160C // ensembl // 11 // --- /// YER159C-A // cdna:known chromosome:SGD1:V:496797:498119:-1 gene:YER159C-A // ensembl // 11 // --- /// YGR027W-A // cdna:known chromosome:SGD1:VII:536061:537383:1 gene:YGR027W-A // ensembl // 11 // --- /// YGR027W-B // cdna:known chromosome:SGD1:VII:536061:541329:1 gene:YGR027W-B // ensembl // 11 // --- /// YGR038C-B // cdna:known chromosome:SGD1:VII:562203:567471:-1 gene:YGR038C-B // ensembl // 11 // --- /// YGR038C-A // cdna:known chromosome:SGD1:VII:566149:567471:-1 gene:YGR038C-A // ensembl // 11 // --- /// YGR161C-D // cdna:known chromosome:SGD1:VII:817752:823020:-1 gene:YGR161C-D // ensembl // 11 // --- /// YGR161C-C // cdna:known chromosome:SGD1:VII:821698:823020:-1 gene:YGR161C-C // ensembl // 11 // --- /// YHR214C-B // cdna:known chromosome:SGD1:VIII:543963:549345:-1 gene:YHR214C-B // ensembl // 11 // --- /// YHR214C-C // cdna:known chromosome:SGD1:VIII:547909:549345:-1 gene:YHR214C-C // ensembl // 11 // --- /// YJR026W // cdna:known chromosome:SGD1:X:472674:473996:1 gene:YJR026W // ensembl // 11 // --- /// YJR027W // cdna:known chromosome:SGD1:X:472674:477942:1 gene:YJR027W // ensembl // 11 // --- /// YJR029W // cdna:known chromosome:SGD1:X:478258:483526:1 gene:YJR029W // ensembl // 11 // --- /// YJR028W // cdna:known chromosome:SGD1:X:478258:479580:1 gene:YJR028W // ensembl // 11 // --- /// YLR157C-B // cdna:known chromosome:SGD1:XII:476334:481602:-1 gene:YLR157C-B // ensembl // 11 // --- /// YLR157C-A // cdna:known chromosome:SGD1:XII:480280:481602:-1 gene:YLR157C-A // ensembl // 11 // --- /// YLR227W-B // cdna:known chromosome:SGD1:XII:593440:598708:1 gene:YLR227W-B // ensembl // 11 // --- /// YLR227W-A // cdna:known chromosome:SGD1:XII:593440:594762:1 gene:YLR227W-A // ensembl // 11 // --- /// YLR256W-A // cdna:known chromosome:SGD1:XII:651119:652441:1 gene:YLR256W-A // ensembl // 11 // --- /// YML045W-A // cdna:known chromosome:SGD1:XIII:184461:185783:1 gene:YML045W-A // ensembl // 11 // --- /// YML045W // cdna:known chromosome:SGD1:XIII:184461:189729:1 gene:YML045W // ensembl // 11 // --- /// YML040W // cdna:known chromosome:SGD1:XIII:196628:197950:1 gene:YML040W // ensembl // 11 // --- /// YML039W // cdna:known chromosome:SGD1:XIII:196628:201896:1 gene:YML039W // ensembl // 11 // --- /// YMR050C // cdna:known chromosome:SGD1:XIII:373056:378324:-1 gene:YMR050C // ensembl // 11 // --- /// YMR051C // cdna:known chromosome:SGD1:XIII:377002:378324:-1 gene:YMR051C // ensembl // 11 // --- /// YNL054W-A // cdna:known chromosome:SGD1:XIV:519455:520777:1 gene:YNL054W-A // ensembl // 11 // --- /// YNL054W-B // cdna:pseudogene chromosome:SGD1:XIV:519455:524705:1 gene:YNL054W-B // ensembl // 11 // --- /// YOL103W-B // cdna:known chromosome:SGD1:XV:117999:123267:1 gene:YOL103W-B // ensembl // 11 // --- /// YOL103W-A // cdna:known chromosome:SGD1:XV:117999:119321:1 gene:YOL103W-A // ensembl // 11 // --- /// YOR142W-B // cdna:known chromosome:SGD1:XV:595112:600380:1 gene:YOR142W-B // ensembl // 11 // --- /// YOR142W-A // cdna:known chromosome:SGD1:XV:595112:596434:1 gene:YOR142W-A // ensembl // 11 // --- /// YPL257W-B // cdna:known chromosome:SGD1:XVI:56748:62016:1 gene:YPL257W-B // ensembl // 11 // --- /// YPL257W-A // cdna:known chromosome:SGD1:XVI:56748:58070:1 gene:YPL257W-A // ensembl // 11 // --- /// YPR137C-B // cdna:known chromosome:SGD1:XVI:804997:810265:-1 gene:YPR137C-B // ensembl // 11 // --- /// YPR137C-A // cdna:known chromosome:SGD1:XVI:808943:810265:-1 gene:YPR137C-A // ensembl // 11 // --- /// YPR158W-A // cdna:known chromosome:SGD1:XVI:844705:846027:1 gene:YPR158W-A // ensembl // 11 // --- /// YPR158W-B // cdna:known chromosome:SGD1:XVI:844705:849976:1 gene:YPR158W-B // ensembl // 11 // --- /// YPR158C-D // cdna:known chromosome:SGD1:XVI:850985:856253:-1 gene:YPR158C-D // ensembl // 11 // --- /// YPR158C-C // cdna:known chromosome:SGD1:XVI:854931:856253:-1 gene:YPR158C-C // ensembl // 11 // --- --- No cerevisiae_gene 2.5813738578478 2.01819158985621 2.22659924126235 1.97568206175564 1.13852745430426 Max fold change below threshold 4 2.5813738578478 Max fold change at or above threshold -0.989330850506273 0.900235514425837 0.821346064455704 -0.732250728375268 266.559482574463 93.6895020062669 0.351476905272334 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773143_at YJL038C.S1 Hypothetical protein 2.58057185998478 17.4129819869995 11.5792474746704 --- --- --- --- 10.0246706008911 25.8693828582764 8.95658111572266 13.1338243484497 0.018554700538516 0.0239257998764515 0.00805663969367743 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL038C /GEN=NUP192 /DB_XREF=GI:6322422 /SEG=NC_001142:-375031,375690 /DEF=Hypothetical ORF /NOTE=Yjl038cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003575 // span:5-22,191-213 // numtm:2 S0003575 // YJL038C SGDID:S0003575, Chr X from 375690-375031, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YJL038C // cdna:known chromosome:SGD1:X:375031:375690:-1 gene:YJL038C // ensembl // 11 // --- --- No cerevisiae_gene -1.75972701170832 2.58057185998478 1.59874782490897 -1.11925191893741 1.31015021553748 Max fold change below threshold 4 2.58057185998478 Max fold change at or above threshold -0.574258243302987 1.46064510383592 -0.711430748117653 -0.174956112415283 14.496114730835 7.78646920978485 0.537141803466973 PPPPPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1777259_at SPAC513.05.S1 --- 2.58015712853587 --- --- --- --- 11.5816507339478 6.12124729156494 8.72085285186768 4.48873853683472 0.018554700538516 0.5 0.129638999700546 0.0375977009534836 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC513.05 /DEF=alpha-mannosidase (predicted) --- --- --- --- --- --- SPAC513.05 // |||alpha-mannosidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.94017187210808 -1.89204098156714 -1.85069666816444 -1.32804106784893 -2.58015712853587 Max fold change below threshold 4 2.58015712853587 Max fold change at or above threshold PAAAAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1771660_s_at SPAC1420.03.S1 --- 2.58001282556761 --- --- --- --- 9.34370040893555 3.90254688262939 5.79840898513794 3.62157130241394 0.194580003619194 0.466064006090164 0.0805663987994194 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1420.03 /GEN=rpn501 /DEF=19S proteasome regulatory subunit (PMID 12783882) --- --- --- --- --- --- SPAC1420.03 // |rpn501|rpn5-a|19S proteasome regulatory subunit |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- /// SPAPB8E5.02c // |rpn502|rpn5-b|19S proteasome regulatory subunit |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.69321040700229 -2.39425705570002 -2.34763682840029 -1.61142486376602 -2.58001282556761 Max fold change below threshold 4 2.58001282556761 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776384_at YLL055W.S1 Hypothetical protein 2.57983206490364 799.223388671875 337.799301147461 --- --- 5783 // endoplasmic reticulum // inferred from direct assay 15075 // ion transporter activity // traceable author statement 314.423461914063 787.287048339844 811.159729003906 361.175140380859 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL055W /GEN=JLP1 /DB_XREF=GI:6322973 /SEG=NC_001144:+30109,31704 /DEF=Hypothetical ORF /NOTE=Yll055wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: ion transporter activity [goid GO:0015075] [evidence TAS] [pmid 10869563]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003978 // span:55-72,126-148,155-177,187-209,216-238,324-346,353-375,379-401,414-436,446-468 // numtm:10 S0003978 // YLL055W SGDID:S0003978, Chr XII from 30109-31704, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017660 // cdna:Genscan chromosome:SGD1:XII:30322:31704:1 // ensembl // 11 // --- /// GENEFINDER00000024584 // cdna:GeneFinder chromosome:SGD1:XII:30622:31704:1 // ensembl // 11 // --- /// YLL055W // cdna:known chromosome:SGD1:XII:30109:31704:1 gene:YLL055W // ensembl // 11 // --- --- No cerevisiae_gene 1.20366138964196 2.50390681263799 1.50729911633745 2.57983206490364 1.14869017147192 Max fold change below threshold 4 2.57983206490364 Max fold change at or above threshold -0.950700295773156 0.818575539718459 0.907898038299058 -0.775773282244361 568.511344909668 267.263914953312 0.47011184094449 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778259_at YDR143C.S1 Ubiquitin-protein ligase, controls turnover of a specific class of unstable nuclear proteins including Sir4p but not Sir2p or Sir3p; san1 mutations suppress sir4, spt16, and cdc68 mutations, suggesting a role in chromatin silencing 2.57974819647603 340.206436157227 783.183013916016 SAN1 6325 // establishment and/or maintenance of chromatin architecture // inferred from genetic interaction /// 6511 // ubiquitin-dependent protein catabolism // inferred from direct assay /// 6950 // response to stress // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 4842 // ubiquitin-protein ligase activity // inferred from direct assay 750.947631835938 291.093383789063 389.319488525391 815.418395996094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR143C /GEN=SAN1 /DB_XREF=GI:6320347 /SEG=NC_001136:-742036,743868 /DEF=Protein of unknown function; san1 mutations suppress sir4 and cdc68 mutations, suggesting a potential role in chromatin silencing /NOTE=San1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: establishment and/or maintenance of chromatin architecture [goid GO:0006325] [evidence IGI] [pmid 8246972] --- --- --- --- --- --- S0002550 // SAN1 SGDID:S0002550, Chr IV from 743869-742037, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023609 // cdna:GeneFinder chromosome:SGD1:IV:742037:743869:-1 // ensembl // 11 // --- /// GENSCAN00000025202 // cdna:Genscan chromosome:SGD1:IV:742037:743869:-1 // ensembl // 11 // --- /// YDR143C // cdna:known chromosome:SGD1:IV:742037:743869:-1 gene:YDR143C // ensembl // 11 // --- --- No cerevisiae_gene -1.21516126148949 -2.57974819647603 -1.17796496414938 -1.92887244016546 1.0858525434091 Max fold change below threshold 4 2.57974819647603 Max fold change at or above threshold 0.727303091237407 -1.03992691742925 -0.662441832401223 0.975065658593064 561.694725036621 260.211882885481 0.463262108912481 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778592_at YLR441C.S1 Ribosomal protein 10 (rp10) of the small (40S) subunit; nearly identical to Rps1Ap and has similarity to rat S3a ribosomal protein /// Ribosomal protein 10 (rp10) of the small (40S) subunit; nearly identical to Rps1Bp and has similarity to rat S3a ribosomal protein 2.57920083155257 673.329315185547 1313.60192871094 RPS1B /// RPS1A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 1407.86694335938 545.853942871094 800.8046875 1219.3369140625 0.000732421991415322 0.00585938012227416 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR441C /GEN=RPS1A /DB_XREF=GI:6323474 /SEG=NC_001144:-1018137,1018904 /DEF=Ribosomal protein 10 (rp10) of the small (40S) subunit; nearly identical to Rps1Bp and has similarity to rat S3a ribosomal protein /NOTE=Rps1ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004433 // RPS1A SGDID:S0004433, Chr XII from 1018904-1018137, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018156 // cdna:Genscan chromosome:SGD1:XII:1018137:1018904:-1 // ensembl // 11 // --- /// GENEFINDER00000024695 // cdna:GeneFinder chromosome:SGD1:XII:1018137:1018904:-1 // ensembl // 11 // --- /// YLR441C // cdna:known chromosome:SGD1:XII:1018137:1018904:-1 gene:YLR441C // ensembl // 11 // --- --- No cerevisiae_gene 1.44577927150778 -2.57920083155257 -1.81675087974596 -1.75806531272255 -1.15461684717536 Max fold change below threshold 4 2.57920083155257 Max fold change at or above threshold 1.05803165777011 -1.14282291677687 -0.491893624199086 0.576684883205841 993.465621948242 391.671948913625 0.39424811514417 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1777946_at YLR010C.S1 Protein that regulates telomeric length; protects telomeric ends in a complex with Cdc13p and Stn1p 2.57826798313299 215.431182861328 138.937065124512 TEN1 16233 // telomere capping // traceable author statement 783 // nuclear telomere cap complex // traceable author statement --- 127.125442504883 237.186569213867 193.675796508789 150.748687744141 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR010C /GEN=TEN1 /DB_XREF=GI:6323038 /SEG=NC_001144:-167319,167801 /DEF=protein involved in Telomeric pathways in association with Stn1 /NOTE=Ten1p; go_component: nuclear telomere cap complex [goid GO:0000783] [evidence TAS] [pmid 11352055]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: telomere capping [goid GO:0016233] [evidence TAS] [pmid 11352055] --- --- --- --- --- --- S0004000 // TEN1 SGDID:S0004000, Chr XII from 167801-167319, reverse complement, Verified ORF // sgd // 11 // --- /// YLR010C // cdna:known chromosome:SGD1:XII:167319:167801:-1 gene:YLR010C // ensembl // 11 // --- --- No cerevisiae_gene 1.76699199031891 1.86576789461132 2.57826798313299 1.52350145409602 1.18582625770094 Max fold change below threshold 4 2.57826798313299 Max fold change at or above threshold -1.03066203151245 1.23539494546845 0.339548309963091 -0.544281223919089 177.18412399292 48.5694436755164 0.274118485228717 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774119_at YJL047C.S1 Cullin subunit of a Roc1p-dependent E3 ubiquitin ligase complex; deletion phenotype suggests a role in anaphase progression; interacts with Mms22p and implicated in Mms22-dependent DNA repair; modified by the ubiquitin-like protein, Rub1p 2.57754040130799 242.35334777832 330.457214355469 RTT101 335 // negative regulation of DNA transposition // inferred from mutant phenotype /// 6511 // ubiquitin-dependent protein catabolism // inferred from curator /// 7088 // regulation of mitosis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4842 // ubiquitin-protein ligase activity // inferred from direct assay /// 5515 // protein binding // inferred from physical interaction 310.813690185547 189.994445800781 294.712249755859 350.100738525391 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL047C /GEN=RTT101 /DB_XREF=GI:6322414 /SEG=NC_001142:-349496,352024 /DEF=Cullin family member; subunit of a complex containing ubiquitin ligase activity; binds HRT1 and is modified by the ubiquitin like protein, RUB1; Regulator of Ty1 Transposition /NOTE=Rtt101p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12676951]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence IDA] [pmid 12676951]; go_process: negative regulation of DNA transposition [goid GO:0000335] [evidence IMP] [pmid 11779788]; go_process: regulation of mitosis [goid GO:0007088] [evidence IMP] [pmid 12676951]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence IC] [pmid 12676951] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 0.740000009536743 /// scop // a.4.5.SCF ubiquitin ligase complex WHB domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; SCF ubiquitin ligase complex WHB domain // 1.39999997615814 --- S0003583 // RTT101 SGDID:S0003583, Chr X from 352024-349496, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024106 // cdna:Genscan chromosome:SGD1:X:349496:352024:-1 // ensembl // 11 // --- /// GENEFINDER00000024281 // cdna:GeneFinder chromosome:SGD1:X:349496:351514:-1 // ensembl // 11 // --- /// YJL047C // cdna:known chromosome:SGD1:X:349496:352024:-1 gene:YJL047C // ensembl // 11 // --- --- No cerevisiae_gene -2.57754040130799 -1.63590934922093 1.28001884780009 -1.05463444577898 1.1264006367171 Max fold change below threshold 4 2.57754040130799 Max fold change at or above threshold 0.357086594566996 -1.41045721895196 0.121528082633224 0.93184254175174 286.405281066895 68.3543137435614 0.238662895771102 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772636_at SPBC354.05c.S1 --- 2.57741415023986 --- --- --- --- 15.3825273513794 9.74955749511719 14.9426822662354 5.96820163726807 0.0561522990465164 0.0375977009534836 0.0561522990465164 0.0805663987994194 M P M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC354.05c /GEN=sre2 /DEF=DNA binding --- --- --- --- --- --- SPBC354.05c // |sre2||DNA binding|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.73077341559338 -1.57776672008789 -1.59591883661742 -1.02943548402538 -2.57741415023986 Max fold change below threshold 4 2.57741415023986 Max fold change at or above threshold MPPAMA No 4 0 MPMA 1 1 2 No No x = 1
1769801_at YHR114W.S1 SH3 domain protein implicated in the regulation of actin polymerization, able to recruit actin polymerization machinery through its SH3 domains, colocalizes with cortical actin patches and Las17p, interacts with type I myosins 2.57721102541364 247.989555358887 575.506652832031 BZZ1 7015 // actin filament organization // inferred from physical interaction /// 7015 // actin filament organization // RCA /// 9651 // response to salt stress // inferred from genetic interaction /// 9651 // response to salt stress // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay /// 30479 // actin cortical patch // inferred from direct assay --- 514.800537109375 199.751022338867 296.228088378906 636.212768554688 0.000244141003349796 0.00292969006113708 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR114W /GEN=BZZ1 /DB_XREF=GI:6321906 /SEG=NC_001140:+338085,339986 /DEF=Associated with LAS17p/Bee1p /NOTE=Bzz1p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 12391157]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: actin filament organization [goid GO:0007015] [evidence IPI] [pmid 12391157]; go_process: actin filament organization [goid GO:0007015] [evidence TAS] [pmid 14566057]; go_process: response to salt stress [goid GO:0009651] [evidence IGI,IPI] [pmid 7753824] --- --- --- --- --- --- S0001156 // BZZ1 SGDID:S0001156, Chr VIII from 338085-339986, Verified ORF // sgd // 11 // --- /// GENSCAN00000016651 // cdna:Genscan chromosome:SGD1:VIII:338085:339986:1 // ensembl // 11 // --- /// GENEFINDER00000020227 // cdna:GeneFinder chromosome:SGD1:VIII:338085:339986:1 // ensembl // 11 // --- /// YHR114W // cdna:known chromosome:SGD1:VIII:338085:339986:1 gene:YHR114W // ensembl // 11 // --- --- No cerevisiae_gene -1.22962909616162 -2.57721102541364 1.21469959305196 -1.73785186923561 1.23584324936226 Max fold change below threshold 4 2.57721102541364 Max fold change at or above threshold 0.516789324166315 -1.06312704515599 -0.57931199782326 1.12564971881294 411.748104095459 199.408981948612 0.484298482409967 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779579_at SPBC405.07.S1 --- 2.57553010195321 --- --- --- --- 0.570666551589966 0.313931882381439 0.702229380607605 0.228708565235138 0.850341975688934 0.953857004642487 0.870360970497131 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC405.07 /GEN=rpl3602 /DEF=60S ribosomal protein L36 --- --- --- --- --- --- SPBC405.07 // |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.11807697499922 -1.81780374538889 2.57553010195321 1.23054238705788 -2.49516912933828 Max fold change below threshold 0 2.57553010195321 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779118_at YPR116W.S1 Hypothetical protein 2.57488598402858 126.342342376709 56.7409629821777 --- --- 5739 // mitochondrion // inferred from direct assay --- 51.9010543823242 119.045387268066 133.639297485352 61.5808715820313 0.00195312988944352 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR116W /GEN=PIS1 /DB_XREF=GI:6325373 /SEG=NC_001148:+758644,759477 /DEF=Hypothetical ORF /NOTE=Ypr116wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006320 // YPR116W SGDID:S0006320, Chr XVI from 758646-759479, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017270 // cdna:Genscan chromosome:SGD1:XVI:758646:759479:1 // ensembl // 11 // --- /// YPR116W // cdna:known chromosome:SGD1:XVI:758646:759479:1 gene:YPR116W // ensembl // 11 // --- GENEFINDER00000020836 // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene 1.1308937161673 2.29369882143684 2.19080007790938 2.57488598402858 1.18650521294619 Max fold change below threshold 4 2.57488598402858 Max fold change at or above threshold -0.971216518303294 0.673856664505531 1.03141551272031 -0.734055658922545 91.5416526794434 40.8154078416736 0.445867063211096 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770385_at YOR355W.S1 Protein of unknown function, required for growth on glycerol as a carbon source 2.57369807893032 555.917785644531 1386.83941650391 GDS1 9060 // aerobic respiration // inferred from genetic interaction /// 9060 // aerobic respiration // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 1329.36108398438 516.517883300781 595.317687988281 1444.31774902344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR355W /GEN=GDS1 /DB_XREF=GI:6324931 /SEG=NC_001147:+1005133,1006701 /DEF=Protein of unknown function, required for growth on glycerol as a carbon source /NOTE=Gds1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: aerobic respiration [goid GO:0009060] [evidence IGI,IMP] [pmid 8750239] --- --- --- --- --- --- S0005882 // GDS1 SGDID:S0005882, Chr XV from 1005133-1006701, Verified ORF // sgd // 11 // --- /// GENSCAN00000017807 // cdna:Genscan chromosome:SGD1:XV:1005133:1006701:1 // ensembl // 11 // --- /// GENEFINDER00000022790 // cdna:GeneFinder chromosome:SGD1:XV:1005517:1006701:1 // ensembl // 11 // --- /// YOR355W // cdna:known chromosome:SGD1:XV:1005133:1006701:1 gene:YOR355W // ensembl // 11 // --- --- No cerevisiae_gene -1.25929016404002 -2.57369807893032 -1.48427109945667 -2.23302802991895 1.08647512434659 Max fold change below threshold 4 2.57369807893032 Max fold change at or above threshold 0.741018472328938 -0.941554993045595 -0.778440556789772 0.978977077506428 971.378601074219 483.09522134456 0.497329486989233 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774616_at SPCC576.09.S1 --- 2.57334481435775 --- --- --- --- 3.72520017623901 5.98567867279053 7.06957292556763 7.29912233352661 0.111571997404099 0.194580003619194 0.018554700538516 0.0805663987994194 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC576.09 /GEN=rps20 /DEF=40S ribosomal protein S20 --- --- --- --- --- --- AF282863 // Schizosaccharomyces pombe 40S robosomal protein S20 mRNA, complete cds. // gb // 11 // --- /// SPCC576.09 // |rps20||40S ribosomal protein S20|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- U97371 // gb // 3 // Cross Hyb Matching Probes /// U97389 // gb // 5 // Cross Hyb Matching Probes No No -1.09327647738287 1.60680725588113 2.57334481435775 1.89776994285046 1.95939063357821 Max fold change below threshold 4 2.57334481435775 Max fold change at or above threshold AAAPPA No 4 0 AAPA 3 1 0 No No x = 1
1777093_at YMR218C.S1 One of 10 subunits of the transport protein particle (TRAPP) complex of the cis-Golgi which mediates vesicle docking and fusion; involved in ER to Golgi membrane traffic; mutation activates transcription of OCH1 2.57270208927648 58.1530513763428 146.934768676758 TRS130 6888 // ER to Golgi transport // inferred from mutant phenotype 30008 // TRAPP complex // inferred from direct assay --- 140.318069458008 54.5411262512207 61.7649765014648 153.551467895508 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR218C /GEN=TRS130 /DB_XREF=GI:6323874 /SEG=NC_001145:-703578,706886 /DEF=targeting complex (TRAPP) component involved in ER to Golgi membrane traffic; 130 kD subunit /NOTE=Trs130p; go_component: TRAPP [goid GO:0030008] [evidence IDA] [pmid 10727015]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 10727015] --- --- --- --- scop // a.4.5.Thanscriptional regulator IclR, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Thanscriptional regulator IclR, N-terminal domain // 4.30000019073486 --- S0004831 // TRS130 SGDID:S0004831, Chr XIII from 706886-703578, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018899 // cdna:Genscan chromosome:SGD1:XIII:703578:706163:-1 // ensembl // 11 // --- /// YMR218C // cdna:known chromosome:SGD1:XIII:703578:706886:-1 gene:YMR218C // ensembl // 11 // --- --- No cerevisiae_gene -1.60234105722726 -2.57270208927648 1.29846936972352 -2.27180640884207 1.09431000931395 Max fold change below threshold 4 2.57270208927648 Max fold change at or above threshold 0.731683405632665 -0.929811300667409 -0.789885715758766 0.98801361079351 102.54391002655 51.6263716529082 0.503456242691948 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779651_at SPAP7G5.02c.S1 --- 2.57157572465126 --- --- --- --- 3.98802208900452 10.255500793457 3.46002316474915 1.65493738651276 0.633789002895355 0.601073980331421 0.633789002895355 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP7G5.02c /GEN=gua2 /DEF=GMP synthase (glutamine-hydrolyzing) (predicted) --- --- --- --- --- --- SPAP7G5.02c // |gua2||GMP synthase [glutamine-hydrolyzing] |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.25307387006547 2.57157572465126 -2.33340117648109 -1.15259982350253 -2.40977218927175 Max fold change below threshold 3 2.57157572465126 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771103_at YHR051W.S1 Subunit VI of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; expression is regulated by oxygen levels 2.57148447690303 4608.29809570313 1970.30841064453 COX6 6123 // mitochondrial electron transport, cytochrome c to oxygen // inferred from direct assay /// 9060 // aerobic respiration // traceable author statement 5751 // respiratory chain complex IV (sensu Eukaryota) // inferred from physical interaction 4129 // cytochrome-c oxidase activity // inferred from direct assay 1988.24426269531 5112.7392578125 4103.85693359375 1952.37255859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR051W /GEN=COX6 /DB_XREF=GI:6321842 /SEG=NC_001140:+209698,210144 /DEF=Subunit VI of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; expression is regulated by oxygen levels /NOTE=Cox6p; go_component: respiratory chain complex IV (sensu Eukarya) [goid GO:0005751] [evidence IPI] [pmid 1331058]; go_function: cytochrome-c oxidase activity [goid GO:0004129] [evidence IDA] [pmid 1331058]; go_process: aerobic respiration [goid GO:0009060] [evidence TAS] [pmid 10385027] --- --- --- --- --- --- S0001093 // COX6 SGDID:S0001093, Chr VIII from 209698-210144, Verified ORF // sgd // 10 // --- /// GENSCAN00000016598 // cdna:Genscan chromosome:SGD1:VIII:209698:210144:1 // ensembl // 10 // --- /// GENEFINDER00000020187 // cdna:GeneFinder chromosome:SGD1:VIII:209698:210144:1 // ensembl // 10 // --- /// YHR051W // cdna:known chromosome:SGD1:VIII:209698:210144:1 gene:YHR051W // ensembl // 10 // --- --- No cerevisiae_gene 1.07164702290324 2.57148447690303 1.21027128635804 2.06406074474494 -1.01837339084882 Max fold change below threshold 4 2.57148447690303 Max fold change at or above threshold -0.82459240658609 1.15566741733034 0.516252364071506 -0.847327374815757 3289.30325317383 1577.82072704872 0.47968235386211 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769841_at SPBC4C3.08.S1 --- 2.570994763198 --- --- --- --- 1.87223076820374 3.29095816612244 1.06580078601837 1.60178411006927 0.633789002895355 0.633789002895355 0.805419981479645 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4C3.08 /DEF=galactosyltransferase family 8 --- --- --- --- --- --- SPBC4C3.08 // |||acetylglucosaminyltransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.570994763198 1.75777378623035 -1.12964310395524 -1.75664232262207 -1.1688408921242 Max fold change below threshold 1 2.570994763198 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774618_at YDR320C-A.S1 Essential protein, component of the DASH complex; involved in spindle integrity and kinetochore function; interacts with Duo1p and Dam1p; localizes to intranuclear spindles and kinetochore 2.57073765275062 677.456878662109 886.875183105469 DAD4 7067 // mitosis // inferred from mutant phenotype /// 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from physical interaction /// 31110 // regulation of microtubule polymerization or depolymerization // inferred from physical interaction /// 31110 // regulation of microtubule polymerization or depolymerization // inferred from direct assay 776 // kinetochore // inferred from direct assay /// 776 // kinetochore // inferred from physical interaction /// 5819 // spindle // inferred from direct assay /// 42729 // DASH complex // inferred from direct assay /// 42729 // DASH complex // inferred from physical interaction 5515 // protein binding // inferred from direct assay 885.060852050781 830.597595214844 524.316162109375 888.689514160156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR320C-A /GEN=DAD4 /DB_XREF=GI:24416034 /SEG=NC_001136:-1108273,1108491 /DEF=Essential protein, component of the DASH complex; involved in spindle integrity and kinetochore function; interacts with Duo1p and Dam1p; localizes to intranuclear spindles and kintechore /NOTE=Dad4p; go_component: kinetochore [goid GO:0000776] [evidence IDA] [pmid 12408861]; go_component: spindle [goid GO:0005819] [evidence IDA] [pmid 12408861]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 12408861]; go_process: mitosis [goid GO:0007067] [evidence IMP] [pmid 12408861] --- --- --- --- --- --- S0007604 // DAD4 SGDID:S0007604, Chr IV from 1108493-1108275, reverse complement, Verified ORF // sgd // 11 // --- /// YDR320C-A // cdna:known chromosome:SGD1:IV:1108275:1108493:-1 gene:YDR320C-A // ensembl // 11 // --- --- No cerevisiae_gene -2.57073765275062 -1.06557117086506 -1.06427950564795 -1.6880289337069 1.00409990126777 Max fold change below threshold 4 2.57073765275062 Max fold change at or above threshold 0.591548978036248 0.278436193967775 -1.4823955630647 0.612410391060679 782.166030883789 173.941338735078 0.222384163805397 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775246_at YMR155W.S1 Hypothetical protein 2.57063069577251 356.846481323242 908.279479980469 --- --- --- --- 843.216918945313 328.019470214844 385.673492431641 973.342041015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR155W /GEN=RIM13 /DB_XREF=GI:6323805 /SEG=NC_001145:+568550,570193 /DEF=Hypothetical ORF /NOTE=Ymr155wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004764 // span:21-43,87-104,111-133,148-170,177-199,318-340,398-416,436-458,470-489,516-538 // numtm:10 S0004764 // YMR155W SGDID:S0004764, Chr XIII from 568550-570193, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018843 // cdna:Genscan chromosome:SGD1:XIII:568550:570193:1 // ensembl // 11 // --- /// YMR155W // cdna:known chromosome:SGD1:XIII:568550:570193:1 gene:YMR155W // ensembl // 11 // --- --- No cerevisiae_gene -1.13048629204362 -2.57063069577251 1.50694239256776 -2.18634916708664 1.15431986615386 Max fold change below threshold 4 2.57063069577251 Max fold change at or above threshold 0.650912400905962 -0.941027493550745 -0.762878827890662 1.05299392053545 632.562980651855 323.628706413124 0.511614995363188 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772358_at YKL070W.S1 Hypothetical protein 2.57031568909181 137.275760650635 67.0077133178711 --- --- 5739 // mitochondrion // inferred from direct assay --- 57.3787994384766 127.069892883301 147.481628417969 76.6366271972656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL070W /GEN=STB6 /DB_XREF=GI:6322780 /SEG=NC_001143:+305856,306365 /DEF=Hypothetical ORF /NOTE=Ykl070wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001553 // YKL070W SGDID:S0001553, Chr XI from 305856-306365, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018365 // cdna:Genscan chromosome:SGD1:XI:305856:306365:1 // ensembl // 11 // --- /// GENEFINDER00000022939 // cdna:GeneFinder chromosome:SGD1:XI:305856:306365:1 // ensembl // 11 // --- /// YKL070W // cdna:known chromosome:SGD1:XI:305856:306365:1 gene:YKL070W // ensembl // 11 // --- --- No cerevisiae_gene 1.78988742352163 2.2145791499097 1.57458906380929 2.57031568909181 1.33562618854439 Max fold change below threshold 4 2.57031568909181 Max fold change at or above threshold -1.06184374395474 0.59133309476536 1.07552995201096 -0.605019302821575 102.141736984253 42.1558612560647 0.412719251705733 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778899_at YDR258C.S1 Oligomeric mitochondrial matrix chaperone that cooperates with Ssc1p in mitochondrial thermotolerance after heat shock; prevents the aggregation of misfolded matrix proteins; component of the mitochondrial proteolysis system 2.56955924358284 7010.3671875 3070.47790527344 HSP78 2 // mitochondrial genome maintenance // inferred from direct assay /// 6457 // protein folding // inferred from direct assay /// 6950 // response to stress // inferred from direct assay /// 30150 // mitochondrial matrix protein import // inferred from direct assay 5759 // mitochondrial matrix // inferred from direct assay 16887 // ATPase activity // inferred from sequence similarity /// 51082 // unfolded protein binding // inferred from direct assay 3299.15454101563 8477.373046875 5543.361328125 2841.80126953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR258C /GEN=HSP78 /DB_XREF=GI:6320464 /SEG=NC_001136:-971800,974235 /DEF=Similar to E. coli ClpB protein; involved in folding of some mitochondrial proteins /NOTE=Hsp78p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 8413229]; go_function: ATP-dependent peptidase activity [goid GO:0004176] [evidence ISS] [pmid 8413229]; go_function: chaperone activity [goid GO:0003754] [evidence IDA] [pmid 12023279]; go_function: heat shock protein activity [goid GO:0003773] [evidence IDA,ISS] [pmid 8413229]; go_process: mitochondrial genome maintenance [goid GO:0000002] [evidence IDA] [pmid 12023279]; go_process: mitochondrial matrix protein import [goid GO:0030150] [evidence IDA] [pmid 7500331]; go_process: protein folding [goid GO:0006457] [evidence IDA] [pmid 8830768]; go_process: response to stress [goid GO:0006950] [evidence IDA] [pmid 8830768] --- --- --- --- scop // a.2.7.Seryl-tRNA synthetase (SerRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) // 0.28999999165535 --- S0002666 // HSP78 SGDID:S0002666, Chr IV from 974237-971802, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023752 // cdna:GeneFinder chromosome:SGD1:IV:971802:974237:-1 // ensembl // 11 // --- /// GENSCAN00000025298 // cdna:Genscan chromosome:SGD1:IV:971802:973985:-1 // ensembl // 11 // --- /// YDR258C // cdna:known chromosome:SGD1:IV:971802:974237:-1 gene:YDR258C // ensembl // 11 // --- --- No cerevisiae_gene 1.05758348215544 2.56955924358284 -1.05973749624459 1.6802369392549 -1.16093780954634 Max fold change below threshold 4 2.56955924358284 Max fold change at or above threshold -0.675547627239205 1.3334097613817 0.195121658240923 -0.852983792383416 5040.42254638672 2577.56512666209 0.511378778850563 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779519_at SPBP23A10.05.S1 --- 2.56928012683606 --- --- --- --- 13.9431734085083 12.495566368103 12.9140386581421 5.42687940597534 0.149657994508743 0.129638999700546 0.111571997404099 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP23A10.05 /DEF=coiled-coil (region) (predicted) --- --- --- --- --- --- SPBP23A10.05 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.29008253611716 -1.11584965401012 -1.28261139230557 -1.07969116227768 -2.56928012683606 Max fold change below threshold 4 2.56928012683606 Max fold change at or above threshold APAPAP No 4 0 AAAP 3 1 0 No No x = 1
1774425_at YPR035W.S1 Glutamine synthetase (GS), synthesizes glutamine from glutamate and ammonia; with Glt1p, forms the secondary pathway for glutamate biosynthesis from ammonia; expression regulated by nitrogen source and by amino acid limitation 2.56896991392005 5866.74877929688 2403.98791503906 GLN1 6542 // glutamine biosynthesis // traceable author statement /// 6807 // nitrogen compound metabolism // inferred from sequence similarity /// 6807 // nitrogen compound metabolism // inferred from expression pattern 5737 // cytoplasm // inferred from direct assay 4356 // glutamate-ammonia ligase activity // inferred from sequence similarity /// 4356 // glutamate-ammonia ligase activity // inferred from mutant phenotype 2447.080078125 6286.47509765625 5447.0224609375 2360.89575195313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR035W /GEN=GLN1 /DB_XREF=GI:6325292 /SEG=NC_001148:+642203,643315 /DEF=Glutamine synthetase (GS), synthesizes glutamine from glutamate and ammonia; with Glt1p, forms the secondary pathway for glutamate biosynthesis from ammonia; expression regulated by nitrogen source and by amino acid limitation /NOTE=Gln1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: glutamate-ammonia ligase activity [goid GO:0004356] [evidence IMP,ISS] [pmid 1347768]; go_process: glutamine biosynthesis [goid GO:0006542] [evidence TAS]; go_process: nitrogen metabolism [goid GO:0006807] [evidence IEP,ISS] [pmid 1347768] --- --- --- --- --- --- S0006239 // GLN1 SGDID:S0006239, Chr XVI from 642205-643317, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020776 // cdna:GeneFinder chromosome:SGD1:XVI:639522:643317:1 // ensembl // 11 // --- /// GENSCAN00000017214 // cdna:Genscan chromosome:SGD1:XVI:642205:643317:1 // ensembl // 11 // --- /// YPR035W // cdna:known chromosome:SGD1:XVI:642205:643317:1 gene:YPR035W // ensembl // 11 // --- --- No cerevisiae_gene 1.83704171505421 2.56896991392005 1.281678978055 2.22592734485057 -1.03650492661549 Max fold change below threshold 4 2.56896991392005 Max fold change at or above threshold -0.832205541354946 1.06034199883244 0.646551801511234 -0.874688258988726 4135.36834716797 2028.6914531886 0.490570919656507 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771183_at YMR202W.S1 C-8 sterol isomerase, catalyzes the isomerization of the delta-8 double bond to the delta-7 position at an intermediate step in ergosterol biosynthesis 2.56835011031876 2537.654296875 4912.26147460938 ERG2 6696 // ergosterol biosynthesis // traceable author statement 5783 // endoplasmic reticulum // traceable author statement 247 // C-8 sterol isomerase activity // traceable author statement 5442.59912109375 2956.20532226563 2119.10327148438 4381.923828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR202W /GEN=ERG2 /DB_XREF=GI:6323858 /SEG=NC_001145:+667536,668204 /DEF=C-8 sterol isomerase, catalyzes the isomerization of the delta-8 double bond to the delta-7 position at an intermediate step in ergosterol biosynthesis /NOTE=Erg2p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS]; go_function: C-8 sterol isomerase activity [goid GO:0000247] [evidence TAS]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence TAS] --- --- --- --- --- S0004815 // span:3-25 // numtm:1 S0004815 // ERG2 SGDID:S0004815, Chr XIII from 667536-668204, Verified ORF // sgd // 11 // --- /// GENSCAN00000018884 // cdna:Genscan chromosome:SGD1:XIII:667536:668204:1 // ensembl // 11 // --- /// GENEFINDER00000022084 // cdna:GeneFinder chromosome:SGD1:XIII:667536:668204:1 // ensembl // 11 // --- /// YMR202W // cdna:known chromosome:SGD1:XIII:667536:668204:1 gene:YMR202W // ensembl // 11 // --- --- No cerevisiae_gene -1.36126236495464 -1.8410761526275 -1.27064595061823 -2.56835011031876 -1.24205699016512 Max fold change below threshold 4 2.56835011031876 Max fold change at or above threshold 1.16229909455505 -0.520202001486534 -1.08665495781305 0.444557864744532 3724.95788574219 1477.79624315125 0.396728309011957 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769615_at SPAPJ691.03.S1 --- 2.56786151061858 --- --- --- --- 7.07354164123535 2.75464296340942 7.7432541847229 4.13053035736084 0.296142578125 0.457763671875 0.030273400247097 0.00805663969367743 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPJ691.03 /DEF=DUF543 --- --- --- --- --- --- SPAPJ691.03 // |||DUF543|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.42299257101993 -2.56786151061858 1.1343197235163 1.09467853268629 -1.71250203466727 Max fold change below threshold 4 2.56786151061858 Max fold change at or above threshold AAAAPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1778000_at YGR257C.S1 Mitochondrial protein of the mitochondrial carrier family, involved in activating mitochondrial Sod2p probably by facilitating insertion of an essential manganese cofactor 2.567851956763 358.303817749023 842.817626953125 MTM1 6810 // transport // inferred from sequence similarity /// 6828 // manganese ion transport // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5743 // mitochondrial inner membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity /// 16530 // metallochaperone activity // inferred from mutant phenotype 776.950988769531 302.568450927734 414.039184570313 908.684265136719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR257C /GEN=MTM1 /DB_XREF=GI:6321696 /SEG=NC_001139:-1006210,1007310 /DEF=Hypothetical ORF /NOTE=Mtm1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence ISS] [pmid 10930523]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 12890866]; go_function: metallochaperone activity [goid GO:0016530] [evidence IMP] [pmid 12890866]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 10930523]; go_process: manganese ion transport [goid GO:0006828] [evidence IMP] [pmid 12890866]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 10930523] --- --- --- --- --- --- S0003489 // MTM1 SGDID:S0003489, Chr VII from 1007311-1006211, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019539 // cdna:Genscan chromosome:SGD1:VII:1006211:1007215:-1 // ensembl // 11 // --- /// YGR257C // cdna:known chromosome:SGD1:VII:1006211:1007311:-1 gene:YGR257C // ensembl // 11 // --- --- No cerevisiae_gene -1.44451767517985 -2.567851956763 1.29286366030575 -1.87651559978761 1.16955159111879 Max fold change below threshold 4 2.567851956763 Max fold change at or above threshold 0.611470158895643 -1.03301267840161 -0.646590975001373 1.06813349450734 600.560722351074 288.46913271619 0.480332998779693 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778635_at SPBC21.07c.S1 --- 2.56692710857828 --- --- --- --- 1.83719372749329 4.20045757293701 4.7159423828125 2.6275315284729 0.725830018520355 0.398925989866257 0.149657994508743 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21.07c /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPBC21.07c // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.33595514206341 2.28634439040254 2.26419339638496 2.56692710857828 1.43018751324498 Max fold change below threshold 3 2.56692710857828 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773950_at SPBC25H2.04c.S1 --- 2.56670875018762 --- --- --- --- 3.00698781013489 2.47945833206177 3.44467258453369 2.13899254798889 0.805419981479645 0.888427972793579 0.850341975688934 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25H2.04c /GEN=tim22 /DEF=TIM22 inner membrane protein import complex --- --- --- --- --- --- SPBC25H2.04c // |tim22||TIM22 inner membrane protein import complex|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.77336592227473 -1.21275996908343 2.56670875018762 1.14555588583486 -1.40579630020782 Max fold change below threshold 2 2.56670875018762 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771843_at YNL199C.S1 Transcriptional activator of genes involved in glycolysis; interacts and functions with the DNA-binding protein Gcr1p 2.56670158977315 428.29460144043 978.089538574219 GCR2 45821 // positive regulation of glycolysis // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 5634 // nucleus // inferred from curator 16563 // transcriptional activator activity // inferred from direct assay 972.602172851563 378.930755615234 477.658447265625 983.576904296875 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL199C /GEN=GCR2 /DB_XREF=GI:6324130 /SEG=NC_001146:-264925,266529 /DEF=Transcriptional activator of genes involved in glycolysis, functions and interacts with Gcr1p /NOTE=Gcr2p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 1508187]; go_function: transcriptional activator activity [goid GO:0016563] [evidence IDA] [pmid 1508187]; go_process: positive regulation of glycolysis [goid GO:0045821] [evidence IMP] [pmid 2247062]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IMP] [pmid 10455229] --- --- --- --- --- --- S0005143 // GCR2 SGDID:S0005143, Chr XIV from 266529-264925, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019881 // cdna:Genscan chromosome:SGD1:XIV:264925:265542:-1 // ensembl // 11 // --- /// GENEFINDER00000020589 // cdna:GeneFinder chromosome:SGD1:XIV:264925:266529:-1 // ensembl // 11 // --- /// YNL199C // cdna:known chromosome:SGD1:XIV:264925:266529:-1 gene:YNL199C // ensembl // 11 // --- --- No cerevisiae_gene -1.49322128303477 -2.56670158977315 -1.03223310228363 -2.03618752776019 1.0112838853867 Max fold change below threshold 4 2.56670158977315 Max fold change at or above threshold 0.841895234089533 -1.01330296193139 -0.704783080176327 0.876190808018188 703.192070007324 320.004309248278 0.455073831030184 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775461_at SPCC576.11.S1 --- 2.56653606643259 --- --- --- --- 13.329553604126 5.79330110549927 9.27940464019775 5.19359683990479 0.303710997104645 0.533936023712158 0.194580003619194 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC576.11 /GEN=rpl15 /DEF=60S ribosomal protein L15 --- --- --- --- --- --- SPCC576.11 // |rpl15||60S ribosomal protein L15|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.90379177656699 -2.30085634448949 -1.66597494645823 -1.43646646751272 -2.56653606643259 Max fold change below threshold 4 2.56653606643259 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774158_at YNL074C.S1 Serine-rich protein of unknown function; overproduction suppresses the growth inhibition caused by exposure to the immunosuppressant leflunomide 2.56574505183052 1341.86950683594 592.072418212891 MLF3 42493 // response to drug // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 562.3232421875 1240.9609375 1442.77807617188 621.821594238281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL074C /GEN=MLF3 /DB_XREF=GI:6324255 /SEG=NC_001146:-486765,488123 /DEF=Protein of unknown function /NOTE=Mlf3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to drug [goid GO:0042493] [evidence IMP] [pmid 9805003] --- --- --- --- --- --- S0005018 // MLF3 SGDID:S0005018, Chr XIV from 488123-486765, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019973 // cdna:Genscan chromosome:SGD1:XIV:486765:488123:-1 // ensembl // 11 // --- /// GENEFINDER00000020555 // cdna:GeneFinder chromosome:SGD1:XIV:486765:487790:-1 // ensembl // 11 // --- /// YNL074C // cdna:known chromosome:SGD1:XIV:486765:488123:-1 gene:YNL074C // ensembl // 11 // --- --- No cerevisiae_gene 1.31344745484258 2.20684624856075 1.41359394184631 2.56574505183052 1.10580809681515 Max fold change below threshold 4 2.56574505183052 Max fold change at or above threshold -0.91687122621812 0.620820312834518 1.07810777080376 -0.782056857420154 966.970962524414 441.335390146325 0.456410179054557 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-CreX-5_at AFFX-CreX-5 --- 2.56568589144639 --- --- --- --- 7385.68701171875 8599.767578125 2878.64038085938 3202.10205078125 4.42872878920753E-5 4.42872878920753E-5 4.42872878920753E-5 4.42872878920753E-5 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. --- --- --- --- --- --- X03453 // X03453 /description=Bacteriophage P1 ORF2, putatitve cre protein // gb // --- // --- /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// AFFX-CreX-5 // Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. // affx // --- // --- /// X03453 // Bacteriophage /REF=X03453 /DEF=Bacteriophage P1 cre recombinase protein /LEN=1058 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// AFFX-CreX-5 // --- // unknown // --- // --- /// AFFX-CreX-5 // --- // unknown // --- // --- /// AFFX-CreX-5 // --- // unknown // --- // --- /// AFFX-CreX-5 // --- // unknown // --- // --- /// AFFX-CreX-5 // --- // gb // --- // --- /// AFFX-CreX-5 // Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. // affx // --- // --- /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-CreX-5 // --- // unknown // --- // --- /// AFFX-CreX-5 // --- // affx // --- // --- /// AFFX-CreX-5 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-CreX-5 // --- // affx // --- // --- /// AFFX-CreX-5 // --- // affx // --- // --- /// AFFX-CreX-5 // --- // affx // --- // --- /// AFFX-CreX-5 // --- // affx // --- // --- /// AFFX-CreX-5 // --- // affx // --- // --- /// AFFX-CreX-5 // --- // affx // --- // --- /// AFFX-CreX-5 // --- // affx // --- // --- /// AFFX-CreX-5 // --- // affx // --- // --- /// AFFX-CreX-5 // --- // affx // --- // --- /// AFFX-CreX-5 // --- // affx // --- // --- /// AFFX-CreX-5 // --- // affx // --- // --- --- AFFX_control No -1.66936954396492 1.16438288875224 -1.86646886341797 -2.56568589144639 -2.30651206444741 Max fold change below threshold 4 2.56568589144639 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774926_at YBR214W.S1 One of two S. cerevisiae homologs (Sds23p and Sds24p) of the Schizosaccharomyces pombe Sds23 protein, which genetic studies have implicated in APC/cyclosome regulation; may play an indirect role in fluid-phase endocytosis 2.5651465620445 2831.25769042969 1165.46075439453 SDS24 6259 // DNA metabolism // inferred from genetic interaction /// 6897 // endocytosis // inferred from mutant phenotype /// 7126 // meiosis // inferred from expression pattern 5737 // cytoplasm // inferred from direct assay --- 1141.81958007813 2928.9345703125 2733.58081054688 1189.10192871094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR214W /GEN=SDS24 /DB_XREF=GI:6319691 /SEG=NC_001134:+651372,652955 /DEF=Similar to S. pombe SDS23, suppresses DIS2, localized to the nucleus /NOTE=Sds24p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA metabolism [goid GO:0006259] [evidence IGI] [pmid 10051619]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 11378903]; go_process: meiosis [goid GO:0007126] [evidence IEP] [pmid 10051619] --- --- --- --- --- --- S0000418 // SDS24 SGDID:S0000418, Chr II from 651410-652993, Verified ORF // sgd // 11 // --- /// GENSCAN00000021311 // cdna:Genscan chromosome:SGD1:II:651410:652993:1 // ensembl // 11 // --- /// GENEFINDER00000022370 // cdna:GeneFinder chromosome:SGD1:II:651410:652993:1 // ensembl // 11 // --- /// YBR214W // cdna:known chromosome:SGD1:II:651410:652993:1 gene:YBR214W // ensembl // 11 // --- --- No cerevisiae_gene 1.73680913803245 2.5651465620445 1.01744630463002 2.39405669533171 1.04140964952587 Max fold change below threshold 4 2.5651465620445 Max fold change at or above threshold -0.887382925356505 0.964084595354324 0.76169630851702 -0.838397978514838 1998.35922241211 965.242419995708 0.483017472119261 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774906_at YOR107W.S1 Negative regulator of glucose-induced cAMP signaling; directly activates the GTPase activity of the heterotrimeric G protein alpha subunit Gpa2p 2.56424088942543 624.602813720703 291.435729980469 RGS2 7188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 5096 // GTPase activator activity // inferred from direct assay 271.500549316406 553.012817382813 696.192810058594 311.370910644531 0.00122069998178631 0.00415039015933871 0.00122069998178631 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR107W /GEN=RGS2 /DB_XREF=GI:6324681 /SEG=NC_001147:+521353,522282 /DEF=Regulator of G-protein Signalling for gpa2; belongs to the RGS protein family and acts on Gpa2 /NOTE=Rgs2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: GTPase activator activity [goid GO:0005096] [evidence IDA] [pmid 10523302]; go_process: G-protein signaling, coupled to cAMP nucleotide second messenger [goid GO:0007188] [evidence IMP] [pmid 10523302] --- --- --- --- --- --- S0005633 // RGS2 SGDID:S0005633, Chr XV from 521353-522282, Verified ORF // sgd // 11 // --- /// GENSCAN00000017539 // cdna:Genscan chromosome:SGD1:XV:521353:522282:1 // ensembl // 11 // --- /// GENEFINDER00000022676 // cdna:GeneFinder chromosome:SGD1:XV:521353:522282:1 // ensembl // 11 // --- /// YOR107W // cdna:known chromosome:SGD1:XV:521353:522282:1 gene:YOR107W // ensembl // 11 // --- --- No cerevisiae_gene 1.52598260220558 2.03687550089754 -1.09570099687332 2.56424088942543 1.14685186246773 Max fold change below threshold 4 2.56424088942543 Max fold change at or above threshold -0.924745828970086 0.470970869929204 1.18084652862954 -0.727071569588659 458.019271850586 201.697284476439 0.440368554059961 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774541_at YLR196W.S1 Protein with WD-40 repeats involved in rRNA processing; associates with trans-acting ribosome biogenesis factors; similar to beta-transducin superfamily 2.56395339337368 264.634284973145 539.0673828125 PWP1 6364 // rRNA processing // inferred from mutant phenotype /// 6364 // rRNA processing // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay /// 5730 // nucleolus // inferred from physical interaction /// 5737 // cytoplasm // inferred from direct assay --- 511.747619628906 227.68879699707 301.579772949219 566.387145996094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR196W /GEN=PWP1 /DB_XREF=GI:6323225 /SEG=NC_001144:+543970,545700 /DEF=periodic tryptophan proteinProtein with periodic trytophan residues that resembles members of beta-transducin superfamily because of presence of WD-40 repeats /NOTE=Pwp1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004186 // PWP1 SGDID:S0004186, Chr XII from 543970-545700, Verified ORF // sgd // 11 // --- /// GENSCAN00000017973 // cdna:Genscan chromosome:SGD1:XII:543970:545700:1 // ensembl // 11 // --- /// GENEFINDER00000024688 // cdna:GeneFinder chromosome:SGD1:XII:543970:545700:1 // ensembl // 11 // --- /// YLR196W // cdna:known chromosome:SGD1:XII:543970:545700:1 gene:YLR196W // ensembl // 11 // --- --- No cerevisiae_gene 2.56395339337368 -2.24757487578755 1.05357534099042 -1.69688973044978 1.10677045534048 Max fold change below threshold 4 2.56395339337368 Max fold change at or above threshold 0.674936931285576 -1.06962537567892 -0.615820032558091 1.01050847695143 401.850833892822 162.825266542697 0.405188325641559 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779700_at SPBC887.17.S1 --- 2.56390592876544 --- --- --- --- 2.28781509399414 1.65500545501709 5.86574268341064 1.37501156330109 0.633789002895355 0.953857004642487 0.665526986122131 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC887.17 /DEF=uracil permease (predicted) --- --- --- --- --- --- SPBC887.17 // |||uracil permease |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.10321076155048 -1.38236105932987 -1.62418703200044 2.56390592876544 -1.66385153045668 Max fold change below threshold 1 2.56390592876544 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778115_at SPAC11H11.02c.S1 --- 2.56365906678075 --- --- --- --- 6.11139297485352 4.16338014602661 9.11927127838135 2.38385558128357 0.194580003619194 0.274170011281967 0.0676269978284836 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11H11.02c /DEF=hypothetical protein --- --- --- --- --- --- SPAC11H11.02c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.02017843164755 -1.46789213583728 -1.08589214247926 1.49217556715864 -2.56365906678075 Max fold change below threshold 3 2.56365906678075 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778010_at YPL076W.S1 Protein involved in the synthesis of N-acetylglucosaminyl phosphatidylinositol (GlcNAc-PI), the first intermediate in the synthesis of glycosylphosphatidylinositol (GPI) anchors; homologous to the human PIG-C protein 2.56273650060895 173.30428314209 186.743774414063 GPI2 6506 // GPI anchor biosynthesis // inferred from direct assay /// 6506 // GPI anchor biosynthesis // inferred from genetic interaction /// 6506 // GPI anchor biosynthesis // inferred from mutant phenotype 506 // glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex // inferred from physical interaction /// 506 // glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex // traceable author statement /// 5783 // endoplasmic reticulum // inferred from direct assay 8194 // UDP-glycosyltransferase activity // inferred from curator 156.886077880859 161.270950317383 185.337615966797 216.601470947266 0.000244141003349796 0.00122069998178631 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL076W /GEN=GPI2 /DB_XREF=GI:6325181 /SEG=NC_001148:+410438,411280 /DEF=Protein involved in the synthesis of N-acetylglucosaminyl phosphatidylinositol (GlcNAc-PI), the first intermediate in the synthesis of glycosylphosphatidylinositol (GPI) anchors; homologous to the human PIG-C protein /NOTE=Gpi2p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: GPI anchor biosynthesis [goid GO:0006506] [evidence IDA,IGI,IMP] [pmid 7768896] --- --- --- --- --- S0005997 // span:75-97,107-129,141-158,173-195,202-224,234-256 // numtm:6 S0005997 // GPI2 SGDID:S0005997, Chr XVI from 410440-411282, Verified ORF // sgd // 10 // --- /// YPL076W // cdna:known chromosome:SGD1:XVI:410440:411282:1 gene:YPL076W // ensembl // 10 // --- GENSCAN00000017130 // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene 2.56273650060895 1.02794940440702 1.84727874397254 1.1813515798868 1.3806290135684 Max fold change below threshold 4 2.56273650060895 Max fold change at or above threshold -0.844280930961841 -0.684281275015548 0.193887538199403 1.33467466777799 180.024028778076 27.4055116593206 0.152232520543714 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775336_at SPAP14E8.04.S1 --- 2.56265669454786 --- --- --- --- 14.9242267608643 22.2434425354004 8.22819232940674 10.3659448623657 0.0107421996071935 0.149657994508743 0.274170011281967 0.00292969006113708 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP14E8.04 /DEF=metallo peptidase --- --- --- --- --- --- SPAP14E8.04 // |||metallopeptidase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.7712849920554 1.49042512498733 -2.56265669454786 -1.81379167663918 -1.4397362670766 Max fold change below threshold 4 2.56265669454786 Max fold change at or above threshold PPAAAP No 3 0 PAAP 2 2 0 No No 1 < x = 2
1779292_at SPAC12B10.07.S1 --- 2.56122106810328 --- --- --- --- 0.326529324054718 0.836313784122467 0.543642818927765 0.236299991607666 0.976073980331421 0.932372987270355 0.932372987270355 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12B10.07 /DEF=F-actin capping protein (alpha subunit) --- --- --- --- --- --- SPAC12B10.07 // |||F-actin capping protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.1787783441181 2.56122106810328 1.1725523629522 1.66491270118412 -1.38184230068388 Max fold change below threshold 0 2.56122106810328 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779848_at YDR295C.S1 Subunit of a possibly tetrameric trichostatin A-sensitive class II histone deacetylase complex that contains an Hda1p homodimer and an Hda2p-Hda3p heterodimer; required for the activity of the complex; has similarity to Hda3p; Ploidy-related 2.5603539335803 309.562469482422 706.867065429688 HDA2 6355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 16575 // histone deacetylation // inferred from direct assay 118 // histone deacetylase complex // inferred from mutant phenotype /// 118 // histone deacetylase complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay 4407 // histone deacetylase activity // inferred from mutant phenotype 669.886352539063 357.486755371094 261.63818359375 743.847778320313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR295C /GEN=HDA2 /DB_XREF=GI:6320501 /SEG=NC_001136:-1052615,1054639 /DEF=Subunit of a possibly tetrameric trichostatin A-sensitive class II histone deacetylase complex that contains an Hda1p homodimer and an Hda2p-Hda3p heterodimer; required for the activity of the complex; has similarity to Hda3p /NOTE=Hda2p; go_component: histone deacetylase complex [goid GO:0000118] [evidence IMP,IPI] [pmid 11287668]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: histone deacetylase activity [goid GO:0004407] [evidence IMP] [pmid 11287668]; go_process: histone deacetylation [goid GO:0016575] [evidence IDA] [pmid 11287668]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence IDA] [pmid 11287668] --- --- --- --- --- --- S0002703 // HDA2 SGDID:S0002703, Chr IV from 1054641-1052617, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023873 // cdna:GeneFinder chromosome:SGD1:IV:1052617:1054335:-1 // ensembl // 10 // --- /// GENSCAN00000025326 // cdna:Genscan chromosome:SGD1:IV:1052617:1054641:-1 // ensembl // 10 // --- /// YDR295C // cdna:known chromosome:SGD1:IV:1052617:1054641:-1 gene:YDR295C // ensembl // 10 // --- --- No cerevisiae_gene -1.31969924508262 -1.87387740237727 -1.15576873542971 -2.5603539335803 1.1104089156331 Max fold change below threshold 4 2.5603539335803 Max fold change at or above threshold 0.688995154781578 -0.642356973014624 -1.05083445230338 1.00419627053642 508.214767456055 234.648362852799 0.461711028247696 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779534_at YDR287W.S1 inositol monophosphatase 2.55990355690451 951.200500488281 578.864807128906 --- 46855 // inositol phosphate dephosphorylation // inferred from direct assay --- 8934 // inositol-1(or 4)-monophosphatase activity // inferred from direct assay /// 8934 // inositol-1(or 4)-monophosphatase activity // inferred from sequence similarity 507.4033203125 603.497436523438 1298.90356445313 650.326293945313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR287W /GEN=ZIP1 /DB_XREF=GI:6320493 /SEG=NC_001136:+1035987,1036865 /DEF=inositol monophosphatase /NOTE=Ydr287wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: inositol-1(or 4)-monophosphatase activity [goid GO:0008934] [evidence IDA,ISS] [pmid 10096091]; go_process: myo-inositol metabolism [goid GO:0006020] [evidence IDA] [pmid 10096091] --- --- --- --- --- --- S0002695 // YDR287W SGDID:S0002695, Chr IV from 1035989-1036867, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025320 // cdna:Genscan chromosome:SGD1:IV:1035989:1036867:1 // ensembl // 11 // --- /// YDR287W // cdna:known chromosome:SGD1:IV:1035989:1036867:1 gene:YDR287W // ensembl // 11 // --- GENEFINDER00000023826 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.00479129265067 1.18938409025734 2.10357095428817 2.55990355690451 1.28167528258347 Max fold change below threshold 4 2.55990355690451 Max fold change at or above threshold -0.713947635830475 -0.447649671406102 1.47947389888002 -0.31787659164344 765.032653808594 360.851861630462 0.471681646311459 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772196_at YLR259C.S1 Tetradecameric mitochondrial chaperonin required for ATP-dependent folding of precursor polypeptides and complex assembly; prevents aggregation and mediates protein refolding after heat shock; role in mtDNA transmission; similarity to groEL 2.55835117697496 8888.02685546875 4211.71008300781 HSP60 6457 // protein folding // traceable author statement /// 30150 // mitochondrial matrix protein import // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 42645 // mitochondrial nucleoid // inferred from direct assay 3697 // single-stranded DNA binding // inferred from direct assay 4499.39794921875 11511.0400390625 6265.013671875 3924.02221679688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR259C /GEN=HSP60 /DB_XREF=GI:6323288 /SEG=NC_001144:-663286,665004 /DEF=60 kDa heat shock protein /NOTE=Hsp60p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 8097278]; go_function: heat shock protein activity [goid GO:0003773] [evidence TAS] [pmid 8336673]; go_process: mitochondrial matrix protein import [goid GO:0030150] [evidence TAS] [pmid 8336673]; go_process: protein folding [goid GO:0006457] [evidence TAS] [pmid 8336673] --- --- --- --- --- --- S0004249 // HSP60 SGDID:S0004249, Chr XII from 665004-663286, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018022 // cdna:Genscan chromosome:SGD1:XII:663286:665004:-1 // ensembl // 11 // --- /// GENEFINDER00000024778 // cdna:GeneFinder chromosome:SGD1:XII:663286:665004:-1 // ensembl // 11 // --- /// YLR259C // cdna:known chromosome:SGD1:XII:663286:665004:-1 gene:YLR259C // ensembl // 11 // --- --- No cerevisiae_gene 1.17885237901295 2.55835117697496 1.03962389933462 1.39241154985254 -1.14662907104831 Max fold change below threshold 4 2.55835117697496 Max fold change at or above threshold -0.593621836718214 1.43628486769231 -0.082466939347743 -0.760196091626355 6549.86846923828 3454.16962986971 0.52736473199307 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776422_at YCL038C.S1 Protein required for the breakdown of autophagic vesicles in the vacuole during autophagy, putative integral membrane protein that localizes to vacuolar membranes and punctate structures attached to the vacuole 2.55826635206878 1343.42639160156 603.7275390625 ATG22 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6623 // protein-vacuolar targeting // inferred from genetic interaction /// 6914 // autophagy // inferred from mutant phenotype /// 6914 // autophagy // inferred from genetic interaction 5774 // vacuolar membrane // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity --- 573.131591796875 1220.62951660156 1466.22326660156 634.323486328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL038C /GEN=ATG22 /DB_XREF=GI:6319811 /SEG=NC_001135:-54941,56527 /DEF=Autophagy gene essential for breakdown of autophagic vesicles in the vacuole /NOTE=Atg22p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: autophagy [goid GO:0006914] [evidence IGI,IMP] [pmid 8663607]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IGI,IMP] [pmid 8663607] --- --- --- --- --- S0000543 // span:96-118,131-150,157-179,206-228,240-262,321-343,355-377,392-414,421-443,485-504 // numtm:10 S0000543 // ATG22 SGDID:S0000543, Chr III from 56527-54941, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022436 // cdna:Genscan chromosome:SGD1:III:54941:56527:-1 // ensembl // 11 // --- /// GENEFINDER00000023377 // cdna:GeneFinder chromosome:SGD1:III:54941:56527:-1 // ensembl // 11 // --- /// YCL038C // cdna:known chromosome:SGD1:III:54941:56527:-1 gene:YCL038C // ensembl // 11 // --- --- No cerevisiae_gene -1.33504283638745 2.12975437765463 1.16774041158707 2.55826635206878 1.10676761743215 Max fold change below threshold 4 2.55826635206878 Max fold change at or above threshold -0.911371292263967 0.562265461877925 1.12121084644685 -0.772105016060805 973.576965332031 439.387741235953 0.451312794860654 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774020_at SPAC144.16.S1 --- 2.55793112957784 --- --- --- --- 4.04027986526489 1.57951080799103 7.69762134552002 4.599853515625 0.633789002895355 0.601073980331421 0.0805663987994194 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC144.16 /DEF=conserved protein --- --- --- --- --- --- SPAC144.16 // |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.446026341218 -2.55793112957784 1.19399200833794 1.90521983679844 1.1384987349938 Max fold change below threshold 3 2.55793112957784 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771529_at YDR380W.S1 Phenylpyruvate decarboxylase, catalyzes decarboxylation of phenylpyruvate to phenylacetaldehyde, which is the first specific step in the Ehrlich pathway 2.55710648020975 969.049163818359 468.766540527344 ARO10 6552 // leucine catabolism // inferred from mutant phenotype /// 6559 // L-phenylalanine catabolism // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 4737 // pyruvate decarboxylase activity // inferred from sequence similarity /// 16831 // carboxy-lyase activity // inferred from sequence similarity /// 16831 // carboxy-lyase activity // inferred from mutant phenotype /// 50177 // phenylpyruvate decarboxylase activity // inferred from direct assay 461.050109863281 759.144104003906 1178.95422363281 476.482971191406 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR380W /GEN=ARO10 /DB_XREF=GI:6320588 /SEG=NC_001136:+1234206,1236113 /DEF=Phenylpyruvate decarboxylase, catalyzes decarboxylation of phenylpyruvate to phenylacetaldehyde, which is the first specific step in the Ehrlich pathway /NOTE=Aro10p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: carboxy-lyase activity [goid GO:0016831] [evidence IMP,ISS] [pmid 10753893]; go_function: phenylpyruvate decarboxylase activity [goid GO:0050177] [evidence IDA] [pmid 12902239]; go_function: pyruvate decarboxylase activity [goid GO:0004737] [evidence ISS] [pmid 8962070]; go_process: leucine catabolism [goid GO:0006552] [evidence IMP] [pmid 10753893]; go_process: phenylalanine catabolism [goid GO:0006559] [evidence IDA] [pmid 12902239] --- --- --- --- --- S0002788 // span:462-484 // numtm:1 S0002788 // ARO10 SGDID:S0002788, Chr IV from 1234208-1236115, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023447 // cdna:GeneFinder chromosome:SGD1:IV:1234208:1236115:1 // ensembl // 11 // --- /// GENSCAN00000025401 // cdna:Genscan chromosome:SGD1:IV:1234208:1236115:1 // ensembl // 11 // --- /// YDR380W // cdna:known chromosome:SGD1:IV:1234208:1236115:1 gene:YDR380W // ensembl // 11 // --- --- No cerevisiae_gene -1.78206169707231 1.6465544368464 1.81309399385346 2.55710648020975 1.03347328413543 Max fold change below threshold 4 2.55710648020975 Max fold change at or above threshold -0.76762183007892 0.11978009653474 1.3695211724816 -0.721679438937423 718.907852172852 335.917677436375 0.467261105051344 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773365_at SPCC1322.01.S1 --- 2.55681108891585 --- --- --- --- 5.17713975906372 2.48292064666748 3.53423738479614 2.48801732063293 0.111571997404099 0.696289002895355 0.334473013877869 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1322.01 /DEF=3-5 exonuclease for RNA 3 ss-tail (predicted) --- --- --- --- --- --- SPCC1322.01 // ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.55681108891585 -2.08510077275823 -1.00196410730709 -1.46485343099339 -2.08082946856121 Max fold change below threshold 2 2.55681108891585 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770075_at YJL133W.S1 Mitochondrial iron transporter of the mitochondrial carrier family (MCF), very similar to and functionally redundant with Mrs4p; functions under low-iron conditions; may transport other cations in addition to iron 2.55553871015536 326.90869140625 376.673645019531 MRS3 6839 // mitochondrial transport // inferred from sequence similarity /// 8380 // RNA splicing // inferred from genetic interaction /// 48250 // mitochondrial iron ion transport // inferred from direct assay 5739 // mitochondrion // inferred from direct assay 5381 // iron ion transporter activity // inferred from mutant phenotype /// 5386 // carrier activity // inferred from sequence similarity 354.273681640625 297.898254394531 355.919128417969 399.073608398438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL133W /GEN=MRS3 /DB_XREF=GI:6322328 /SEG=NC_001142:+160537,161481 /DEF=Mitochondrial iron transporter of the mitochondrial carrier family (MCF), very similar to and functionally redundant with Mrs4p; functions under low-iron conditions; may transport other cations in addition to iron /NOTE=Mrs3p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 1703236]; go_function: carrier activity [goid GO:0005386] [evidence ISS] [pmid 1703236]; go_function: iron ion transporter activity [goid GO:0005381] [evidence IMP] [pmid 12902335]; go_process: RNA splicing [goid GO:0008380] [evidence IGI] [pmid 2448588]; go_process: iron ion transport [goid GO:0006826] [evidence IMP] [pmid 12902335]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 1703236] --- --- --- --- --- --- S0003669 // MRS3 SGDID:S0003669, Chr X from 160537-161481, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024493 // cdna:GeneFinder chromosome:SGD1:X:160591:161481:1 // ensembl // 11 // --- /// YJL133W // cdna:known chromosome:SGD1:X:160537:161481:1 gene:YJL133W // ensembl // 11 // --- --- No cerevisiae_gene 2.55553871015536 -1.18924389926579 1.10143709449006 1.00464456397022 1.12645570100027 Max fold change below threshold 4 2.55553871015536 Max fold change at or above threshold 0.0598397084856185 -1.29906095020577 0.0995023561816317 1.13971888553852 351.791168212891 41.4860548381683 0.117928073774332 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769850_at YPL127C.S1 Histone H1, a linker histone required for nucleosome packaging at restricted sites; suppresses DNA repair involving homologous recombination; not required for telomeric silencing, basal transcriptional repression, or efficient sporulation 2.55491046719679 1588.25146484375 1265.94799804688 HHO1 6355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 45910 // negative regulation of DNA recombination // inferred from mutant phenotype /// 45910 // negative regulation of DNA recombination // inferred from genetic interaction 788 // nuclear nucleosome // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay 3677 // DNA binding // inferred from physical interaction 1266.18249511719 1420.35668945313 1756.14624023438 1265.71350097656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL127C /GEN=HHO1 /DB_XREF=GI:6325130 /SEG=NC_001148:-308827,309603 /DEF=Histone H1, a linker histone required for nucleosome packaging at restricted sites; suppresses DNA repair involving homologous recombination; not required for telomeric silencing, basal transcriptional repression, or efficient sporulation /NOTE=Hho1p; go_component: nuclear nucleosome [goid GO:0000788] [evidence IPI] [pmid 11574687]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: DNA binding [goid GO:0003677] [evidence IPI] [pmid 11574687]; go_process: negative regulation of DNA recombination [goid GO:0045910] [evidence IGI,IMP] [pmid 12820979]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence IMP] [pmid 11574687] --- --- --- --- scop // a.4.5.Histone H1/H5 // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Histone H1/H5 // 3.99999998990097E-6 /// scop // a.4.5.Histone H1/H5 // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Histone H1/H5 // 0.0130000002682209 --- S0006048 // HHO1 SGDID:S0006048, Chr XVI from 309603-308827, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017092 // cdna:Genscan chromosome:SGD1:XVI:308827:309603:-1 // ensembl // 10 // --- /// GENEFINDER00000020875 // cdna:GeneFinder chromosome:SGD1:XVI:308827:309603:-1 // ensembl // 10 // --- /// YPL127C // cdna:known chromosome:SGD1:XVI:308827:309603:-1 gene:YPL127C // ensembl // 10 // --- --- No cerevisiae_gene 2.55491046719679 1.12176301199115 1.1680708353101 1.38696139538072 -1.00037053736115 Max fold change below threshold 4 2.55491046719679 Max fold change at or above threshold -0.696233252487896 -0.0291748116299374 1.4236704921209 -0.698262428003062 1427.09973144531 231.125468013929 0.161954671366838 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775597_at SPBC776.03.S1 --- 2.55476360475778 --- --- --- --- 9.7550573348999 16.8338527679443 13.5567960739136 3.81837964057922 0.149657994508743 0.0461426004767418 0.111571997404099 0.274170011281967 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC776.03 /DEF=homoserine dehydrogenase (predicted) --- --- --- --- --- --- SPBC776.03 // |||homoserine dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.24919407417343 1.72565390340856 -1.74122152023171 1.38971977390768 -2.55476360475778 Max fold change below threshold 4 2.55476360475778 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1773930_at SPBC119.09c.S1 --- 2.55454857547603 --- --- --- --- 6.39916944503784 7.74129772186279 9.72381687164307 2.71430492401123 0.432372987270355 0.194580003619194 0.0952147990465164 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC119.09c /DEF=localization ER membrane (predicted) --- --- --- --- --- --- AB001024 // Schizosaccharomyces pombe ORM1 mRNA, partial cds. // gb // 10 // --- /// SPBC119.09c // |||ORMDL family protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.55454857547603 1.20973476141747 1.1428937086658 1.51954358376668 -2.35757205774106 Max fold change below threshold 4 2.55454857547603 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778473_at YMR134W.S1 Protein required for cell viability 2.5537484620943 1087.8095703125 2480.50964355469 --- 6879 // iron ion homeostasis // inferred from genetic interaction /// 6879 // iron ion homeostasis // inferred from mutant phenotype 5635 // nuclear membrane // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay --- 2453.45678710938 1214.89147949219 960.727661132813 2507.5625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR134W /GEN=REC114 /DB_XREF=GI:6323782 /SEG=NC_001145:+537837,538550 /DEF=Protein required for cell viability /NOTE=Ymr134wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14690591]; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IGI,IMP] [pmid 9180083] --- --- --- --- --- S0004741 // span:32-54 // numtm:1 S0004741 // YMR134W SGDID:S0004741, Chr XIII from 537837-538550, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018826 // cdna:Genscan chromosome:SGD1:XIII:538008:538550:1 // ensembl // 9 // --- /// YMR134W // cdna:known chromosome:SGD1:XIII:537837:538550:1 gene:YMR134W // ensembl // 11 // --- --- No cerevisiae_gene -1.41263798435049 -2.01948637267165 -1.22878351598541 -2.5537484620943 1.02205284934094 Max fold change below threshold 4 2.5537484620943 Max fold change at or above threshold 0.825229244520752 -0.701895541551265 -1.01527414528919 0.891940442319704 1784.15960693359 811.043942782799 0.454580374777527 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770335_at YMR087W.S1 Putative ADP-ribose-1''-monophosphatase that converts ADP-ribose-1''-monophosphate to ADP-ribose; may have a role in tRNA splicing; contains an A1pp domain 2.55308094133831 546.335876464844 1411.82916259766 --- 6388 // tRNA splicing // traceable author statement --- 16791 // phosphoric monoester hydrolase activity // inferred from sequence similarity 1381.041015625 540.93115234375 551.740600585938 1442.61730957031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR087W /GEN=ADH3 /DB_XREF=GI:6323734 /SEG=NC_001145:+442526,443380 /DEF=Hypothetical ORF /NOTE=Ymr087wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004693 // YMR087W SGDID:S0004693, Chr XIII from 442526-443380, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022031 // cdna:GeneFinder chromosome:SGD1:XIII:442526:443380:1 // ensembl // 11 // --- /// YMR087W // cdna:known chromosome:SGD1:XIII:442526:443380:1 gene:YMR087W // ensembl // 11 // --- --- No cerevisiae_gene -2.06225469287165 -2.55308094133831 -1.67462963387837 -2.50306215304504 1.04458686834688 Max fold change below threshold 4 2.55308094133831 Max fold change at or above threshold 0.803364001904592 -0.875699952120483 -0.854095926623784 0.926431876839675 979.08251953125 500.344171684067 0.51103370931759 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771679_at YIL090W.S1 Integral ER membrane protein with type-III transmembrane domains; mutations cause defects in cortical ER morphology in both the mother and daughter cells 2.55305436497501 733.508361816406 1504.32275390625 ICE2 7029 // ER organization and biogenesis // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay --- 1492.677734375 584.663513183594 882.353210449219 1515.9677734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL090W /GEN=RSM25 /DB_XREF=GI:6322101 /SEG=NC_001141:+193592,195067 /DEF=Hypothetical ORF /NOTE=Yil090wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001352 // span:13-32,42-61,68-90,142-164,185-207,217-239,417-439,468-490 // numtm:8 S0001352 // YIL090W SGDID:S0001352, Chr IX from 193592-195067, Uncharacterized ORF // sgd // 11 // --- /// YIL090W // cdna:known chromosome:SGD1:IX:193592:195067:1 gene:YIL090W // ensembl // 11 // --- --- No cerevisiae_gene -1.2123538978148 -2.55305436497501 1.08925192770438 -1.69170091602552 1.01560285822328 Max fold change below threshold 4 2.55305436497501 Max fold change at or above threshold 0.810019381079778 -1.15783387877033 -0.512679180180574 0.860493677871122 1118.91555786133 461.423745213895 0.412384779147991 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773302_at YJR017C.S1 Peptidylprolyl-cis/trans-isomerase (PPIase) specific for phosphorylated serine and threonine residues N-terminal to proline; regulates phosphorylation of the RNA polymerase II large subunit (Rpo21p) C-terminal domain 2.55284857136786 766.072509765625 392.219390869141 ESS1 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 6369 // transcription termination from RNA polymerase II promoter // inferred from mutant phenotype /// 6397 // mRNA processing // inferred from mutant phenotype /// 42326 // negative regulation of phosphorylation // inferred from direct assay 5634 // nucleus // inferred from physical interaction 3711 // transcriptional elongation regulator activity // inferred from genetic interaction /// 3755 // peptidyl-prolyl cis-trans isomerase activity // inferred from sequence similarity /// 3755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay 379.147705078125 564.238342285156 967.906677246094 405.291076660156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR017C /GEN=ESS1 /DB_XREF=GI:37362669 /SEG=NC_001142:-466435,466947 /DEF=Peptidylprolyl-cis/trans-isomerase (PPIase) specific for phosphorylated serine and threonine residues N-terminal to proline; regulates phosphorylation of the RNA polymerase II large subunit (Rpo21p) C-terminal domain /NOTE=Ess1p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 10531363]; go_function: peptidyl-prolyl cis-trans isomerase activity [goid GO:0003755] [evidence ISS] [pmid 7781779]; go_function: peptidyl-prolyl cis-trans isomerase activity [goid GO:0003755] [evidence IDA] [pmid 9867817]; go_function: transcriptional elongation regulator activity [goid GO:0003711] [evidence IGI] [pmid 14704159]; go_process: mRNA processing [goid GO:0006397] [evidence IMP] [pmid 9867817]; go_process: negative regulation of phosphorylation [goid GO:0042326] [evidence IDA] [pmid 11904169]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IGI] [pmid 14704159]; go_process: transcription termination from Pol II promoter [goid GO:0006369] [evidence IMP] [pmid 14704159] --- --- --- --- --- --- S0003778 // ESS1 SGDID:S0003778, Chr X from 466947-466435, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024148 // cdna:Genscan chromosome:SGD1:X:466435:467007:-1 // ensembl // 11 // --- /// GENEFINDER00000024327 // cdna:GeneFinder chromosome:SGD1:X:466435:466947:-1 // ensembl // 11 // --- /// YJR017C // cdna:known chromosome:SGD1:X:466435:466947:-1 gene:YJR017C // ensembl // 11 // --- YJR018W // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene 2.09531957406009 1.48817554406374 1.12297575836017 2.55284857136786 1.06895299966709 Max fold change below threshold 4 2.55284857136786 Max fold change at or above threshold -0.735901380980673 -0.0548531279607482 1.43046032966759 -0.639705820726171 579.145950317383 271.773162013553 0.469265410324662 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775851_at YKL026C.S1 Phospholipid hydroperoxide glutathione peroxidase induced by glucose starvation that protects cells from phospholipid hydroperoxides and nonphospholipid peroxides during oxidative stress 2.55284040001681 5981.3486328125 2879.68908691406 GPX1 6979 // response to oxidative stress // inferred from mutant phenotype --- 4602 // glutathione peroxidase activity // inferred from direct assay 2921.33715820313 7457.70751953125 4504.98974609375 2838.041015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL026C /GEN=GPX1 /DB_XREF=GI:6322826 /SEG=NC_001143:-389023,389526 /DEF=Phospholipid hydroperoxide glutathione peroxidase induced by glucose starvation that protects cells from phospholipid hydroperoxides and nonphospholipid peroxides during oxidative stress /NOTE=Gpx1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: glutathione peroxidase activity [goid GO:0004602] [evidence IDA] [pmid 11445588]; go_process: response to oxidative stress [goid GO:0006979] [evidence IMP] [pmid 11445588] --- --- --- --- --- --- S0001509 // GPX1 SGDID:S0001509, Chr XI from 389526-389023, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018397 // cdna:Genscan chromosome:SGD1:XI:389023:389526:-1 // ensembl // 11 // --- /// YKL026C // cdna:known chromosome:SGD1:XI:389023:389526:-1 gene:YKL026C // ensembl // 11 // --- --- No cerevisiae_gene -1.84219484473826 2.55284040001681 1.34391073156264 1.54209853301038 -1.02934987271838 Max fold change below threshold 4 2.55284040001681 Max fold change at or above threshold -0.699039118267875 1.40216601430894 0.0344942312710976 -0.737621127312164 4430.51885986328 2158.93740739389 0.487287714076114 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774802_at YDR025W.S1 Protein component of the small (40S) ribosomal subunit; identical to Rps11Bp and has similarity to E. coli S17 and rat S11 ribosomal proteins /// Protein component of the small (40S) ribosomal subunit; identical to Rps11Ap and has similarity to E. coli S17 and rat S11 ribosomal proteins 2.55232027263266 1109.25439453125 2364.75830078125 RPS11A /// RPS11B 28 // ribosomal small subunit assembly and maintenance // inferred from mutant phenotype /// 28 // ribosomal small subunit assembly and maintenance // inferred from sequence similarity /// 6412 // protein biosynthesis // traceable author statement /// 6450 // regulation of translational fidelity // inferred from mutant phenotype /// 6450 // regulation of translational fidelity // inferred from sequence similarity 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 2431.130859375 952.517944335938 1265.99084472656 2298.3857421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR025W /GEN=RPS11A /DB_XREF=GI:6320228 /SEG=NC_001136:+491511,492320 /DEF=Protein component of the small (40S) ribosomal subunit; identical to Rps11Bp and has similarity to E. coli S17 and rat S11 ribosomal proteins /NOTE=Rps11ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: regulation of translational fidelity [goid GO:0006450] [evidence IMP,ISS] [pmid 8070651]; go_process: ribosomal small subunit assembly and maintenance [goid GO:0000028] [evidence IMP,ISS] [pmid 8070651] --- --- --- --- --- --- S0002432 // RPS11A SGDID:S0002432, Chr IV from 491511-491555,491895-492320, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023599 // cdna:GeneFinder chromosome:SGD1:IV:491511:492320:1 // ensembl // 11 // --- /// YDR025W // cdna:known chromosome:SGD1:IV:491511:492320:1 gene:YDR025W // ensembl // 11 // --- --- No cerevisiae_gene 1.46858849525885 -2.55232027263266 -1.42933369466504 -1.92033842069379 -1.05775580432428 Max fold change below threshold 4 2.55232027263266 Max fold change at or above threshold 0.940461405335376 -1.0628944141867 -0.638173547168277 0.760606556019596 1737.00634765625 738.068045940938 0.424908087950753 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777462_at YOR201C.S1 Ribose methyltransferase that modifies a functionally critical, conserved nucleotide in mitochondrial 21S rRNA 2.55221561161943 236.160972595215 549.538879394531 --- 154 // rRNA modification // inferred from direct assay 5739 // mitochondrion // inferred from direct assay 8989 // rRNA (guanine-N1-)-methyltransferase activity // inferred from direct assay 517.362915039063 202.711288452148 269.610656738281 581.71484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR201C /GEN=PET56 /DB_XREF=GI:6324775 /SEG=NC_001147:-720470,721708 /DEF=Ribose methyltransferase that modifies a functionally critical, conserved nucleotide in mitochondrial 21S rRNA /NOTE=Pet56p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 8643404]; go_function: rRNA (guanine-N1-)-methyltransferase activity [goid GO:0008989] [evidence IDA] [pmid 8643404]; go_process: rRNA modification [goid GO:0000154] [evidence IDA] [pmid 8643404] --- --- --- --- --- --- S0005727 // PET56 SGDID:S0005727, Chr XV from 721708-720470, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017618 // cdna:Genscan chromosome:SGD1:XV:720470:721708:-1 // ensembl // 11 // --- /// YOR201C // cdna:known chromosome:SGD1:XV:720470:721708:-1 gene:YOR201C // ensembl // 11 // --- YOR200W // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene 1.14053732719525 -2.55221561161943 1.34483312282914 -1.91892605914788 1.12438450232962 Max fold change below threshold 4 2.55221561161943 Max fold change at or above threshold 0.673571290625502 -1.02858286890836 -0.666680916474071 1.02169249475693 392.849925994873 184.854952663678 0.470548523575617 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774102_at YPL244C.S1 Protein with a role in UDP-galactose transport to the Golgi lumen, has similarity to human UDP-galactose transporter UGTrel1, exhibits a genetic interaction with S. cerevisiae ERO1 2.55191549665712 276.447471618652 636.501129150391 HUT1 15785 // UDP-galactose transport // inferred from mutant phenotype --- 5459 // UDP-galactose transporter activity // inferred from sequence similarity 592.71044921875 232.261001586914 320.633941650391 680.291809082031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL244C /GEN=HUT1 /DB_XREF=GI:6325012 /SEG=NC_001148:-87014,88033 /DEF=Protein with a role in UDP-galactose transport to the Golgi lumen, has similarity to human UDP-galactose transporter UGTrel1, exhibits a genetic interaction with S. cerevisiae ERO1 /NOTE=Hut1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: UDP-galactose transporter activity [goid GO:0005459] [evidence ISS] [pmid 11284010]; go_process: UDP-galactose transport [goid GO:0015785] [evidence IMP] [pmid 11284009] --- --- --- --- --- S0006165 // span:7-26,41-63,106-128,138-155,210-232,252-274,281-303,308-327 // numtm:8 S0006165 // HUT1 SGDID:S0006165, Chr XVI from 88033-87014, reverse complement, Verified ORF // sgd // 11 // --- /// YPL244C // cdna:known chromosome:SGD1:XVI:87014:88033:-1 gene:YPL244C // ensembl // 11 // --- --- No cerevisiae_gene 1.24017626255179 -2.55191549665712 1.26099468147769 -1.84855803527196 1.14776415698208 Max fold change below threshold 4 2.55191549665712 Max fold change at or above threshold 0.636638899285039 -1.04776088411942 -0.63478935071933 1.04591133555371 456.474300384521 213.992812860202 0.468794875593085 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772005_at YBL101C.S1 Non-essential protein of unknown function; promoter contains several Gcn4p binding elements 2.55078517898922 795.259216308594 975.720886230469 ECM21 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 885.22412109375 654.705017089844 935.813415527344 1066.21765136719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL101C /GEN=ECM21 /DB_XREF=GI:6319367 /SEG=NC_001134:-24946,28299 /DEF=Non-essential protein of unknown function; promoter contains several Gcn4p binding elements /NOTE=Ecm21p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584] --- --- --- --- --- --- S0000197 // ECM21 SGDID:S0000197, Chr II from 28299-24946, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021058 // cdna:Genscan chromosome:SGD1:II:24946:28299:-1 // ensembl // 11 // --- /// GENEFINDER00000022114 // cdna:GeneFinder chromosome:SGD1:II:24946:28299:-1 // ensembl // 11 // --- /// YBL101C // cdna:known chromosome:SGD1:II:24946:28299:-1 gene:YBL101C // ensembl // 11 // --- --- No cerevisiae_gene -2.55078517898922 -1.35209613182523 1.59328223398581 1.05714857201483 1.20446068510854 Max fold change below threshold 4 2.55078517898922 Max fold change at or above threshold -0.00154868416877953 -1.3440111780294 0.293065641448332 1.05249422074985 885.490051269531 171.71362705336 0.19391931824324 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771197_at YOR155C.S1 Inosine 5'-monophosphate (IMP)-specific 5'-nucleotidase, catalyzes the breakdown of IMP to inosine, does not show similarity to known 5'-nucleotidases from other organisms 2.55015999926393 497.352752685547 1105.56280517578 ISN1 6190 // inosine salvage // inferred from mutant phenotype --- 50483 // IMP 5'-nucleotidase activity // inferred from direct assay 1065.765625 417.921081542969 576.784423828125 1145.35998535156 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR155C /GEN=ISN1 /DB_XREF=GI:6324729 /SEG=NC_001147:-626628,627980 /DEF=Inosine 5'-monophosphate (IMP)-specific 5'-nucleotidase, catalyzes the breakdown of IMP to inosine, does not show similarity to known 5'-nucleotidases from other organisms /NOTE=Isn1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: IMP 5'-nucleotidase activity [goid GO:0050483] [evidence IDA] [pmid 12735798]; go_process: inosine salvage [goid GO:0006190] [evidence IMP] [pmid 12735798] --- --- --- --- --- --- S0005681 // ISN1 SGDID:S0005681, Chr XV from 627980-626628, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017579 // cdna:Genscan chromosome:SGD1:XV:626628:627980:-1 // ensembl // 11 // --- /// GENEFINDER00000022914 // cdna:GeneFinder chromosome:SGD1:XV:626628:627749:-1 // ensembl // 11 // --- /// YOR155C // cdna:known chromosome:SGD1:XV:626628:627980:-1 gene:YOR155C // ensembl // 11 // --- --- No cerevisiae_gene -1.65731751810269 -2.55015999926393 1.20314492955475 -1.84777116192997 1.07468279937398 Max fold change below threshold 4 2.55015999926393 Max fold change at or above threshold 0.737127397201273 -1.06964440019839 -0.62659087851583 0.95910788151295 801.457778930664 358.564675621691 0.447390598791245 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776705_at YLR432W.S1 Inosine monophosphate dehydrogenase, catalyzes the first step of GMP biosynthesis, member of a four-gene family in S. cerevisiae, constitutively expressed /// Hypothetical protein 2.54843164091238 2338.69885253906 1565.40881347656 IMD3 6183 // GTP biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 3938 // IMP dehydrogenase activity // traceable author statement 1538.97521972656 2133.38525390625 2544.01245117188 1591.84240722656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR432W /GEN=IMD3 /DB_XREF=GI:6323464 /SEG=NC_001144:+1002553,1004124 /DEF=Inosine monophosphate dehydrogenase, catalyzes the first step of GMP biosynthesis, member of a four-gene family in S. cerevisiae, constitutively expressed /NOTE=Imd3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: IMP dehydrogenase activity [goid GO:0003938] [evidence TAS] [pmid 11441018]; go_process: GTP biosynthesis [goid GO:0006183] [evidence TAS] [pmid 11441018] --- --- --- --- --- --- S0004424 // IMD3 SGDID:S0004424, Chr XII from 1002553-1004124, Verified ORF // sgd // 11 // --- /// GENSCAN00000018148 // cdna:Genscan chromosome:SGD1:XII:1002553:1004124:1 // ensembl // 11 // --- /// GENEFINDER00000024752 // cdna:GeneFinder chromosome:SGD1:XII:1002553:1004124:1 // ensembl // 11 // --- /// YLR432W // cdna:known chromosome:SGD1:XII:1002553:1004124:1 gene:YLR432W // ensembl // 11 // --- --- No cerevisiae_gene 2.54843164091238 1.38623756026773 -1.16768177755549 1.65305614967854 1.03435220192135 Max fold change below threshold 4 2.54843164091238 Max fold change at or above threshold -0.865298934492242 0.379845095457776 1.24000891135971 -0.754555072325248 1952.05383300781 477.382551642277 0.244553989019199 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773511_at YDR259C.S1 Putative basic leucine zipper (bZIP) transcription factor; overexpression increases sodium and lithium tolerance 2.54616032274551 117.595565795898 59.1414165496826 YAP6 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence similarity 5634 // nucleus // inferred from direct assay 3702 // RNA polymerase II transcription factor activity // inferred from sequence similarity 52.0900459289551 102.5615234375 132.629608154297 66.1927871704102 0.00122069998178631 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR259C /GEN=YAP6 /DB_XREF=GI:6320465 /SEG=NC_001136:-974623,975774 /DEF=bZIP protein /NOTE=Yap6p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11179441]; go_function: RNA polymerase II transcription factor activity [goid GO:0003702] [evidence ISS] [pmid 9372930]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence ISS] [pmid 9372930] --- --- --- --- --- --- S0002667 // YAP6 SGDID:S0002667, Chr IV from 975776-974625, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025299 // cdna:Genscan chromosome:SGD1:IV:974625:975776:-1 // ensembl // 11 // --- /// YDR259C // cdna:known chromosome:SGD1:IV:974625:975776:-1 gene:YDR259C // ensembl // 11 // --- --- No cerevisiae_gene 1.22256523628217 1.96892749101013 -1.0164734573827 2.54616032274551 1.27073773865912 Max fold change below threshold 4 2.54616032274551 Max fold change at or above threshold -0.997476981580877 0.390237864046504 1.21696078956452 -0.609721672030143 88.3684911727905 36.3702079483966 0.411574391117309 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775506_at YDR161W.S1 interacts with PP2C 2.5458012136806 222.243209838867 592.425964355469 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 564.104309082031 222.904190063477 221.582229614258 620.747619628906 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR161W /GEN=SSY1 /DB_XREF=GI:6320365 /SEG=NC_001136:+779037,780200 /DEF=interacts with PP2C /NOTE=Ydr161wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002568 // YDR161W SGDID:S0002568, Chr IV from 779038-780201, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023457 // cdna:GeneFinder chromosome:SGD1:IV:779038:780201:1 // ensembl // 11 // --- /// GENSCAN00000025216 // cdna:Genscan chromosome:SGD1:IV:779038:780201:1 // ensembl // 11 // --- /// YDR161W // cdna:known chromosome:SGD1:IV:779038:780201:1 gene:YDR161W // ensembl // 11 // --- --- No cerevisiae_gene 1.490788803851 -2.53070302950066 1.07018437540067 -2.5458012136806 1.1004128308097 Max fold change below threshold 4 2.5458012136806 Max fold change at or above threshold 0.729252537336112 -0.85792290306997 -0.864072324014557 0.992742689748415 407.334587097168 214.973159445598 0.527755722826251 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776822_at SPCC18B5.03.S1 --- 2.5457990232929 --- --- --- --- 1.3582524061203 0.687845170497894 0.533526957035065 0.590668499469757 0.780517995357513 0.904784977436066 0.943848013877869 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18B5.03 /GEN=wee1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPCC18B5.03 // |wee1||serine/threonine protein kinase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.69767938237255 -1.97464845924139 -2.04386237055163 -2.5457990232929 -2.29951725433065 Max fold change below threshold 0 2.5457990232929 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773021_at SPBC1773.08c.S1 --- 2.54550223009524 --- --- --- --- 2.98630571365356 7.60164785385132 7.06495046615601 2.95586276054382 0.171387001872063 0.14453125 0.000244141003349796 0.14453125 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1773.08c /DEF=mannosyltransferase (predicted) --- --- --- --- --- --- SPBC1773.08c // |||mannosyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.67732159277964 2.54550223009524 -1.32498793539677 2.36578272407096 -1.0102991767805 Max fold change below threshold 4 2.54550223009524 Max fold change at or above threshold AAAAPA No 3 0 AAPA 3 1 0 No No x = 1
1780024_at YNL086W.S1 Hypothetical protein 2.54524474303377 188.22477722168 95.1513710021973 --- --- 5768 // endosome // inferred from direct assay --- 93.2389984130859 139.133483886719 237.316070556641 97.0637435913086 0.000732421991415322 0.00805663969367743 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL086W /GEN=TCB2 /DB_XREF=GI:6324243 /SEG=NC_001146:+466334,466642 /DEF=Hypothetical ORF /NOTE=Ynl086wp; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005030 // YNL086W SGDID:S0005030, Chr XIV from 466334-466642, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019963 // cdna:Genscan chromosome:SGD1:XIV:466334:466642:1 // ensembl // 11 // --- /// GENEFINDER00000020622 // cdna:GeneFinder chromosome:SGD1:XIV:466334:466642:1 // ensembl // 11 // --- /// YNL086W // cdna:known chromosome:SGD1:XIV:466334:466642:1 gene:YNL086W // ensembl // 11 // --- --- No cerevisiae_gene 1.26545529498269 1.4922241364102 2.13783969949485 2.54524474303377 1.04102087370434 Max fold change below threshold 4 2.54524474303377 Max fold change at or above threshold -0.722506942899836 -0.0380958593608221 1.42607243523811 -0.665469632977451 141.688074111938 67.0568998332369 0.473271305672908 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1770289_at YPR178W.S1 Splicing factor, component of the U4/U6-U5 snRNP complex 2.54485745270533 410.103889465332 527.234909057617 PRP4 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 31202 // RNA splicing factor activity, transesterification mechanism // inferred from physical interaction 510.069061279297 200.431289672852 619.776489257813 544.400756835938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR178W /GEN=PRP4 /DB_XREF=GI:6325435 /SEG=NC_001148:+892326,893723 /DEF=Splicing factor, component of the U4/U6-U5 snRNP complex /NOTE=Prp4p; go_component: U4/U6 x U5 tri-snRNP complex [goid GO:0046540] [evidence TAS] [pmid 10377396]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10377396] --- --- --- --- --- --- S0006382 // PRP4 SGDID:S0006382, Chr XVI from 892328-893725, Verified ORF // sgd // 11 // --- /// GENSCAN00000017321 // cdna:Genscan chromosome:SGD1:XVI:892328:893725:1 // ensembl // 11 // --- /// GENEFINDER00000021023 // cdna:GeneFinder chromosome:SGD1:XVI:892328:893725:1 // ensembl // 11 // --- /// YPR178W // cdna:known chromosome:SGD1:XVI:892328:893725:1 gene:YPR178W // ensembl // 11 // --- --- No cerevisiae_gene -1.11651972520455 -2.54485745270533 1.16758217974059 1.21508347850654 1.06730793565588 Max fold change below threshold 4 2.54485745270533 Max fold change at or above threshold 0.224263867514667 -1.45305813958749 0.818554035462345 0.410240236610478 468.669399261475 184.60246171896 0.393886313059601 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778245_at YOR274W.S1 Delta 2-isopentenyl pyrophosphate:tRNA isopentenyl transferase, required for biosynthesis of the modified base isopentenyladenosine in mitochondrial and cytoplasmic tRNAs; gene is nuclear and encodes two isozymic forms 2.54483927912682 349.464096069336 145.36173248291 MOD5 6400 // tRNA modification // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 4811 // tRNA isopentenyltransferase activity // inferred from direct assay 146.425476074219 326.298889160156 372.629302978516 144.297988891602 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR274W /GEN=MOD5 /DB_XREF=GI:6324848 /SEG=NC_001147:+837671,838957 /DEF=transfer RNA isopentenyl transferase /NOTE=Mod5p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 9872948]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 9872948]; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 9872948]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9872948]; go_function: tRNA isopentenyltransferase activity [goid GO:0004811] [evidence IDA] [pmid 3031456]; go_process: tRNA modification [goid GO:0006400] [evidence IMP] [pmid 3031456] --- --- --- --- --- --- S0005800 // MOD5 SGDID:S0005800, Chr XV from 837671-838957, Verified ORF // sgd // 11 // --- /// GENSCAN00000017711 // cdna:Genscan chromosome:SGD1:XV:837704:838957:1 // ensembl // 11 // --- /// GENEFINDER00000022759 // cdna:GeneFinder chromosome:SGD1:XV:837704:838957:1 // ensembl // 11 // --- /// YOR274W // cdna:known chromosome:SGD1:XV:837671:838957:1 gene:YOR274W // ensembl // 11 // --- --- No cerevisiae_gene -1.17152071755208 2.2284297644678 1.53887208815211 2.54483927912682 -1.014743706402 Max fold change below threshold 4 2.54483927912682 Max fold change at or above threshold -0.846145033855333 0.66096315618493 1.04915252178197 -0.863970644111564 247.412914276123 119.350033577306 0.482392093098689 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775110_at SPBC14F5.07.S1 --- 2.54449824163525 --- --- --- --- 5.2707371711731 12.5559129714966 8.90651798248291 2.07142496109009 0.111571997404099 0.0805663987994194 0.0375977009534836 0.219482004642487 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14F5.07 /DEF=zinc finger protein --- --- --- --- --- --- SPBC14F5.07 // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.09809834461744 2.38219295778356 -1.52538617181033 1.68980499183203 -2.54449824163525 Max fold change below threshold 3 2.54449824163525 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1769359_at YCR081W.S1 RNA polymerase II mediator complex subunit 2.54361406458169 112.122611999512 248.737342834473 SRB8 122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement 5667 // transcription factor complex // traceable author statement 16455 // RNA polymerase II transcription mediator activity // traceable author statement 232.068222045898 91.2356262207031 133.00959777832 265.406463623047 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR081W /GEN=SRB8 /DB_XREF=GI:6319923 /SEG=NC_001135:+254367,258650 /DEF=activation mediator subcomplex of RNA polymerase I holoenzyme /NOTE=Srb8p; go_component: transcription factor complex [goid GO:0005667] [evidence TAS] [pmid 9774381]; go_function: RNA polymerase II transcription mediator activity [goid GO:0016455] [evidence TAS] [pmid 9774381]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence TAS] [pmid 9774381] --- --- --- --- --- --- S0000677 // SRB8 SGDID:S0000677, Chr III from 254367-258650, Verified ORF // sgd // 11 // --- /// GENSCAN00000022515 // cdna:Genscan chromosome:SGD1:III:254367:258650:1 // ensembl // 11 // --- /// GENEFINDER00000023371 // cdna:GeneFinder chromosome:SGD1:III:255657:258650:1 // ensembl // 11 // --- /// YCR081W // cdna:known chromosome:SGD1:III:254367:258650:1 gene:YCR081W // ensembl // 11 // --- YCR081C-A // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene -1.38611252021684 -2.54361406458169 1.82594432192419 -1.74474794242047 1.14365707326596 Max fold change below threshold 4 2.54361406458169 Max fold change at or above threshold 0.63098971943504 -1.08990379206329 -0.579449829457583 1.03836390208584 180.429977416992 81.8369032622921 0.453566000693769 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769384_at YHR014W.S1 Meiosis-specific protein of unknown function, involved in maintaining sister chromatid cohesion during meiosis I as well as promoting proper attachment of kinetochores to the spindle during meiosis I and meiosis II 2.54320505307026 34.8694496154785 83.0216522216797 SPO13 45876 // positive regulation of sister chromatid cohesion // inferred from physical interaction /// 45876 // positive regulation of sister chromatid cohesion // inferred from genetic interaction 5634 // nucleus // inferred from direct assay 5515 // protein binding // inferred from direct assay /// 5515 // protein binding // inferred from mutant phenotype 82.5386962890625 37.2843017578125 32.4545974731445 83.5046081542969 0.000244141003349796 0.00415039015933871 0.0239257998764515 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR014W /GEN=SPO13 /DB_XREF=GI:6321802 /SEG=NC_001140:+132039,132914 /DEF=Meiosis-specific protein of unknown function, involved in maintaining sister chromatid cohesion during meiosis I as well as promoting proper attachment of kinetochores to the spindle during meiosis I and meiosis II /NOTE=Spo13p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12101125]; go_function: protein binding [goid GO:0005515] [evidence IDA,IMP] [pmid 12101125]; go_process: positive regulation of sister chromatid cohesion [goid GO:0045876] [evidence IGI,IPI] [pmid 12101125] --- --- --- --- --- --- S0001056 // SPO13 SGDID:S0001056, Chr VIII from 132039-132914, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020221 // cdna:GeneFinder chromosome:SGD1:VIII:132039:132914:1 // ensembl // 11 // --- /// YHR014W // cdna:known chromosome:SGD1:VIII:132039:132914:1 gene:YHR014W // ensembl // 11 // --- --- No cerevisiae_gene 1.00444589792016 -2.21376537571251 -1.92836648280496 -2.54320505307026 1.01170253358318 Max fold change below threshold 4 2.54320505307026 Max fold change at or above threshold 0.846442201511891 -0.777132304286786 -0.950405747194496 0.881095849969392 58.9455509185791 27.8733093982578 0.472865364118132 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1769393_at SPAC1039.07c.S1 --- 2.54310336484171 --- --- --- --- 10.0862131118774 23.7620277404785 7.71232318878174 9.65438842773438 0.0461426004767418 0.0805663987994194 0.212890625 0.00805663969367743 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1039.07c /DEF=aminotransferase class-III pyridoxal-phosphate --- --- --- --- --- --- SPAC1039.07c // |||2,2-dialkylglycine decarboxylase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.54310336484171 2.35589189688016 -1.50802136521195 -1.30780477749542 -1.04472833130502 Max fold change below threshold 4 2.54310336484171 Max fold change at or above threshold PAAAAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1772462_at SPCC622.14.S1 --- 2.54283017060174 --- --- --- --- 1.3039379119873 1.96091508865356 3.31569266319275 0.750279724597931 0.828612983226776 0.780517995357513 0.466064006090164 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC622.14 /DEF=GTPase activating protein (predicted) --- --- --- --- --- --- SPCC622.14 // |||GTPase activating protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.85239627055812 1.503840842901 -1.60536484390502 2.54283017060174 -1.73793569149969 Max fold change below threshold 1 2.54283017060174 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773019_at YBR010W.S1 One of two identical histone H3 proteins (see also HHT1); core histone required for chromatin assembly, involved in heterochromatin-mediated telomeric and HM silencing; regulated by acetylation, methylation, and mitotic phosphorylation /// One of two identical histone H3 proteins (see also HHT2); core histone required for chromatin assembly, involved in heterochromatin-mediated telomeric and HM silencing; regulated by acetylation, methylation, and mitotic phosphorylation 2.54264639412591 2710.29809570313 1260.75482177734 HHT2 /// HHT1 6333 // chromatin assembly or disassembly // traceable author statement 788 // nuclear nucleosome // traceable author statement /// 5634 // nucleus // inferred from direct assay 3677 // DNA binding // traceable author statement 1239.35314941406 3151.23681640625 2269.359375 1282.15649414063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR010W /GEN=HHT1 /DB_XREF=GI:6319482 /SEG=NC_001134:+256291,256701 /DEF=One of two identical histone H3 proteins (see also HHT2); core histone required for chromatin assembly, involved in heterochromatin-mediated telomeric and HM silencing; regulated by acetylation, methylation, and mitotic phosphorylation /NOTE=Hht1p; go_component: nuclear nucleosome [goid GO:0000788] [evidence TAS] [pmid 2275823]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 2275823]; go_process: chromatin assembly/disassembly [goid GO:0006333] [evidence TAS] [pmid 2275823] --- --- --- --- --- --- S0000214 // HHT1 SGDID:S0000214, Chr II from 256329-256739, Verified ORF // sgd // 11 // --- /// GENSCAN00000021146 // cdna:Genscan chromosome:SGD1:II:256329:256739:1 // ensembl // 11 // --- /// GENEFINDER00000022269 // cdna:GeneFinder chromosome:SGD1:II:256329:256739:1 // ensembl // 11 // --- /// YBR010W // cdna:known chromosome:SGD1:II:256329:256739:1 gene:YBR010W // ensembl // 11 // --- --- No cerevisiae_gene 2.03442524762427 2.54264639412591 1.24984208760142 1.83108371982021 1.03453684266409 Max fold change below threshold 4 2.54264639412591 Max fold change at or above threshold -0.818876125522896 1.27929043995085 0.31148795575729 -0.771902270185239 1985.52645874023 911.216344046787 0.458929338380578 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776774_at YPR119W.S1 B-type cyclin involved in cell cycle progression; activates Cdc28p to promote the transition from G2 to M phase; accumulates during G2 and M, then targeted via a destruction box motif for ubiquitin-mediated degradation by the proteasome 2.54195746687629 64.1393737792969 132.047275543213 CLB2 79 // regulation of cyclin dependent protein kinase activity // traceable author statement /// 86 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 86 // G2/M transition of mitotic cell cycle // inferred from expression pattern 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from sequence similarity /// 5737 // cytoplasm // inferred from direct assay /// 5737 // cytoplasm // inferred from mutant phenotype /// 5816 // spindle pole body // inferred from direct assay /// 5819 // spindle // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 16538 // cyclin-dependent protein kinase regulator activity // traceable author statement 126.167213439941 49.6338806152344 78.6448669433594 137.927337646484 0.000244141003349796 0.0107421996071935 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR119W /GEN=CLB2 /DB_XREF=GI:6325376 /SEG=NC_001148:+771649,773124 /DEF=Involved in mitotic induction /NOTE=Clb2p; go_component: cytoplasm [goid GO:0005737] [evidence IMP,ISS] [pmid 11171327]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11171327]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence IEP,IMP] [pmid 8455600]; go_process: regulation of cyclin dependent protein kinase activity [goid GO:0000079] [evidence TAS] --- --- --- --- --- --- S0006323 // CLB2 SGDID:S0006323, Chr XVI from 771651-773126, Verified ORF // sgd // 11 // --- /// GENSCAN00000017273 // cdna:Genscan chromosome:SGD1:XVI:771651:773126:1 // ensembl // 11 // --- /// GENEFINDER00000021005 // cdna:GeneFinder chromosome:SGD1:XVI:771651:773126:1 // ensembl // 11 // --- /// YPR119W // cdna:known chromosome:SGD1:XVI:771651:773126:1 gene:YPR119W // ensembl // 11 // --- --- No cerevisiae_gene 2.45431958623181 -2.54195746687629 -1.44461538192749 -1.60426507594969 1.09321062014373 Max fold change below threshold 4 2.54195746687629 Max fold change at or above threshold 0.680794906849056 -1.17514687599368 -0.471627249961341 0.965979219105968 98.0933246612549 41.2369253886193 0.420384623836765 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1779414_at YOR305W.S1 Hypothetical protein 2.54192883190518 206.021766662598 552.478256225586 --- --- 5739 // mitochondrion // inferred from direct assay --- 480.990447998047 189.222625732422 222.820907592773 623.966064453125 0.000732421991415322 0.00122069998178631 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR305W /GEN=ISW2 /DB_XREF=GI:6324881 /SEG=NC_001147:+889018,889746 /DEF=Hypothetical ORF /NOTE=Yor305wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005832 // YOR305W SGDID:S0005832, Chr XV from 889018-889746, Uncharacterized ORF // sgd // 11 // --- /// YOR305W // cdna:known chromosome:SGD1:XV:889018:889746:1 gene:YOR305W // ensembl // 11 // --- --- No cerevisiae_gene 1.13995924775531 -2.54192883190518 1.09874218764623 -2.15864145422611 1.29725250688483 Max fold change below threshold 4 2.54192883190518 Max fold change at or above threshold 0.487215665342618 -0.910005129707992 -0.749109326569985 1.17189879093536 379.250011444092 208.82012585209 0.550613367306051 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777039_at YMR207C.S1 Mitochondrial acetyl-coenzyme A carboxylase, catalyzes the production of malonyl-CoA in mitochondrial fatty acid biosynthesis 2.54170342029295 344.548706054688 777.531585693359 HFA1 6633 // fatty acid biosynthesis // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay 3989 // acetyl-CoA carboxylase activity // inferred from sequence similarity /// 3989 // acetyl-CoA carboxylase activity // inferred from genetic interaction 789.483581542969 378.485412597656 310.611999511719 765.57958984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR207C /GEN=HFA1 /DB_XREF=GI:6323863 /SEG=NC_001145:-677192,683563 /DEF=Mitochondrial protein with sequence similarity to acetyl-coenzyme A carboxylase (Acc1p) /NOTE=Hfa1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: acetyl-CoA carboxylase activity [goid GO:0003989] [evidence ISS] [pmid 7906156]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.1.Centromere-binding // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding // 8.80000019073486 --- S0004820 // HFA1 SGDID:S0004820, Chr XIII from 683563-677192, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021842 // cdna:GeneFinder chromosome:SGD1:XIII:676885:683497:-1 // ensembl // 10 // --- /// GENSCAN00000018888 // cdna:Genscan chromosome:SGD1:XIII:677192:683497:-1 // ensembl // 11 // --- /// YMR207C // cdna:known chromosome:SGD1:XIII:677192:683563:-1 gene:YMR207C // ensembl // 11 // --- --- No cerevisiae_gene -2.44602538572476 -2.0859022706437 -1.0067035226026 -2.54170342029295 -1.03122339207619 Max fold change below threshold 4 2.54170342029295 Max fold change at or above threshold 0.907591054658093 -0.725278195987351 -0.994934894090865 0.812622035420122 561.040145874023 251.703048962954 0.448636431481807 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775544_at SPBC800.10c.S1 --- 2.54126348876685 --- --- --- --- 0.921128749847412 0.854022443294525 0.544396579265594 0.362468808889389 0.725830018520355 0.780517995357513 0.870360970497131 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC800.10c /DEF=actin cortical patch component (predicted) --- --- --- --- --- --- SPBC800.10c // |||actin cortical patch component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.50503300898099 -1.07857674828078 2.2763625360878 -1.69201788719914 -2.54126348876685 Max fold change below threshold 0 2.54126348876685 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769958_at YMR135C.S1 Protein of unknown function, involved in proteasome-dependent catabolite inactivation of fructose-1,6-bisphosphatase; contains LisH and CTLH domains, like Vid30p 2.54121595266279 2970.66674804688 1322.30841064453 GID8 45721 // negative regulation of gluconeogenesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1263.70581054688 2729.98413085938 3211.34936523438 1380.91101074219 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR135C /GEN=GID8 /DB_XREF=GI:6323784 /SEG=NC_001145:-538688,540055 /DEF=Protein of unknown function, involved in proteasome-dependent catabolite inactivation of fructose-1,6-bisphosphatase; contains LisH and CTLH domains, like Vid30p /NOTE=Gid8p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: negative regulation of gluconeogenesis [goid GO:0045721] [evidence IMP] [pmid 12686616] --- --- --- --- --- --- S0004742 // GID8 SGDID:S0004742, Chr XIII from 540055-538688, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018827 // cdna:Genscan chromosome:SGD1:XIII:538688:540055:-1 // ensembl // 11 // --- /// GENEFINDER00000021907 // cdna:GeneFinder chromosome:SGD1:XIII:538688:540055:-1 // ensembl // 11 // --- /// YMR135C // cdna:known chromosome:SGD1:XIII:538688:540055:-1 gene:YMR135C // ensembl // 11 // --- --- No cerevisiae_gene -1.16321246114068 2.16030037060442 -1.00093448338442 2.54121595266279 1.09274721950087 Max fold change below threshold 4 2.54121595266279 Max fold change at or above threshold -0.907338506266193 0.599727937497244 1.09448352507647 -0.786872956307516 2146.4875793457 972.935417930824 0.453268599032563 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778236_at SPAC4F8.12c.S1 --- 2.54116224444613 --- --- --- --- 6.13504552841187 13.121129989624 15.5901460647583 9.75641918182373 0.334473013877869 0.0676269978284836 0.171387001872063 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F8.12c /GEN=spp42 /DEF=U5 snRNA-associated splicing factor --- --- --- --- --- --- SPAC4F8.12c // |spp42|cwf6|U5 snRNA-associated splicing factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.31442066891479 2.13871762301666 1.06280260184051 2.54116224444613 1.59027657360341 Max fold change below threshold 4 2.54116224444613 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1772218_at YMR063W.S1 Protein of unknown function, involved in the proteolytic activation of Rim101p in response to alkaline pH; has similarity to A. nidulans PalI; putative membrane protein 2.54092665289524 130.822948455811 128.628746032715 RIM9 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype --- --- 111.738479614258 95.7296371459961 165.916259765625 145.519012451172 0.018554700538516 0.030273400247097 0.00415039015933871 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR063W /GEN=RIM9 /DB_XREF=GI:6323708 /SEG=NC_001145:+397076,397795 /DEF=Regulator of IME2 (RIM) required for IME1 expression /NOTE=Rim9p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 8417990] --- --- --- --- --- S0004667 // span:7-29,92-114,127-149,154-176 // numtm:4 S0004667 // RIM9 SGDID:S0004667, Chr XIII from 397076-397795, Verified ORF // sgd // 11 // --- /// YMR063W // cdna:known chromosome:SGD1:XIII:397076:397795:1 gene:YMR063W // ensembl // 11 // --- --- No cerevisiae_gene 2.54092665289524 -1.167229741442 2.53155112330605 1.48486233514541 1.30231781346525 Max fold change below threshold 4 2.54092665289524 Max fold change at or above threshold -0.565199331462664 -1.0682294160571 1.13717567701853 0.496253070501237 129.725847244263 31.8248211360333 0.245323671512508 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1771069_at YLR063W.S1 Hypothetical protein 2.54020908774274 72.6509819030762 191.408027648926 --- --- 5737 // cytoplasm // inferred from direct assay --- 167.317687988281 65.8676834106445 79.4342803955078 215.49836730957 0.000244141003349796 0.00195312988944352 0.00585938012227416 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR063W /GEN=RPL22A /DB_XREF=GI:6323092 /SEG=NC_001144:+264158,265255 /DEF=Hypothetical ORF /NOTE=Ylr063wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004053 // YLR063W SGDID:S0004053, Chr XII from 264158-265255, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000017868 // cdna:Genscan chromosome:SGD1:XII:264260:265255:1 // ensembl // 10 // --- /// YLR063W // cdna:known chromosome:SGD1:XII:264158:265255:1 gene:YLR063W // ensembl // 10 // --- GENEFINDER00000024680 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 2.52636655233056 -2.54020908774274 -1.09370269741908 -2.1063662584365 1.28795927017987 Max fold change below threshold 4 2.54020908774274 Max fold change at or above threshold 0.493232364942946 -0.924761454129243 -0.735137503391442 1.16666659257774 132.029504776001 71.5447438579223 0.541884512702701 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1773085_at YOR040W.S1 Mitochondrial glyoxalase II, catalyzes the hydrolysis of S-D-lactoylglutathione into glutathione and D-lactate 2.54020317738778 400.226577758789 202.693084716797 GLO4 5975 // carbohydrate metabolism // inferred from mutant phenotype /// 19243 // methylglyoxal catabolism // inferred from direct assay 5739 // mitochondrion // inferred from direct assay /// 5759 // mitochondrial matrix // inferred from direct assay 4416 // hydroxyacylglutathione hydrolase activity // inferred from mutant phenotype /// 4416 // hydroxyacylglutathione hydrolase activity // inferred from direct assay 185.996200561523 327.985015869141 472.468139648438 219.38996887207 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR040W /GEN=GLO4 /DB_XREF=GI:6324614 /SEG=NC_001147:+407063,407920 /DEF=Mitochondrial glyoxylase-II /NOTE=Glo4p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 9261170]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 9261170]; go_function: hydroxyacylglutathione hydrolase activity [goid GO:0004416] [evidence IDA,IMP] [pmid 9261170]; go_process: carbohydrate metabolism [goid GO:0005975] [evidence IMP] [pmid 9261170] --- --- --- --- --- --- S0005566 // GLO4 SGDID:S0005566, Chr XV from 407063-407920, Verified ORF // sgd // 11 // --- /// GENSCAN00000017495 // cdna:Genscan chromosome:SGD1:XV:407063:407920:1 // ensembl // 11 // --- /// YOR040W // cdna:known chromosome:SGD1:XV:407063:407920:1 gene:YOR040W // ensembl // 11 // --- --- No cerevisiae_gene 1.00595260802233 1.76339632142459 1.81408902307053 2.54020317738778 1.17954005624701 Max fold change below threshold 4 2.54020317738778 Max fold change at or above threshold -0.894245641721123 0.205432919556597 1.32442946405417 -0.635616741889646 301.459831237793 129.118471803833 0.42831070154081 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774351_at YPL188W.S1 Mitochondrial NADH kinase, phosphorylates NADH; also phosphorylates NAD(+) with lower specificity; required for the response to oxidative stress 2.54005205434482 336.260330200195 654.608917236328 POS5 6741 // NADP biosynthesis // inferred from direct assay /// 6979 // response to oxidative stress // inferred from mutant phenotype 5759 // mitochondrial matrix // inferred from direct assay 42736 // NADH kinase activity // inferred from direct assay 681.460510253906 268.286041259766 404.234619140625 627.75732421875 0.000244141003349796 0.00292969006113708 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL188W /GEN=POS5 /DB_XREF=GI:6325068 /SEG=NC_001148:+191405,192649 /DEF=Mitochondrial NADH kinase, phosphorylates NADH; also phosphorylates NAD(+) with lower specificity; required for the response to oxidative stress /NOTE=Pos5p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 12727869]; go_function: NADH kinase activity [goid GO:0042736] [evidence IDA] [pmid 12727869]; go_process: NADPH biosynthesis [goid GO:0006741] [evidence IDA] [pmid 12727869]; go_process: response to oxidative stress [goid GO:0006979] [evidence IMP] [pmid 7586028] --- --- --- --- --- --- S0006109 // POS5 SGDID:S0006109, Chr XVI from 191405-192649, Verified ORF // sgd // 11 // --- /// GENSCAN00000017043 // cdna:Genscan chromosome:SGD1:XVI:191657:192649:1 // ensembl // 11 // --- /// YPL188W // cdna:known chromosome:SGD1:XVI:191405:192649:1 gene:YPL188W // ensembl // 11 // --- --- No cerevisiae_gene -1.1829050261218 -2.54005205434482 1.38633059290649 -1.68580442640624 -1.08554768532887 Max fold change below threshold 4 2.54005205434482 Max fold change at or above threshold 0.962651467883668 -1.17545423598595 -0.471944092903635 0.68474686100592 495.434623718262 193.243237809226 0.39004790654098 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778663_at SPAC23C11.05.S1 --- 2.53954663885429 --- --- --- --- 3.05737709999084 5.19972705841064 1.25627863407135 2.16067314147949 0.567627012729645 0.466064006090164 0.753906011581421 0.625244140625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C11.05 /DEF=inorganic pyrophosphatase (PMID 2170949) --- --- --- --- --- --- SPAC23C11.05 // |||inorganic pyrophosphatase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.26373089668682 1.70071498815969 -2.53954663885429 -2.43367754339855 -1.41501138756108 Max fold change below threshold 2 2.53954663885429 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778859_at YDR080W.S1 Vacuolar membrane protein that is a subunit of the homotypic vacuole fusion and vacuole protein sorting (HOPS) complex; essential for membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of protein transport 2.5393822281653 163.703735351563 395.472396850586 VPS41 6827 // high affinity iron ion transport // traceable author statement /// 7033 // vacuole organization and biogenesis // inferred from mutant phenotype /// 15031 // protein transport // inferred from mutant phenotype /// 42145 // homotypic vacuole fusion, non-autophagic // inferred from mutant phenotype /// 42145 // homotypic vacuole fusion, non-autophagic // inferred from direct assay 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5768 // endosome // inferred from direct assay /// 5774 // vacuolar membrane // inferred from direct assay /// 30897 // HOPS complex // inferred from physical interaction 17112 // Rab guanyl-nucleotide exchange factor activity // inferred from physical interaction 384.119689941406 170.260375976563 157.147094726563 406.825103759766 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR080W /GEN=VPS41 /DB_XREF=GI:6320285 /SEG=NC_001136:+604003,606981 /DEF=vacuolar protein sorting /NOTE=Vps41p; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 14562095]; go_component: vacuolar membrane [goid GO:0005774] [evidence IDA] [pmid 9111041]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 9111041]; go_function: Rab guanyl-nucleotide exchange factor activity [goid GO:0017112] [evidence IPI] [pmid 11062257]; go_process: high affinity iron ion transport [goid GO:0006827] [evidence TAS] [pmid 9614122]; go_process: homotypic vacuole fusion, non-autophagic [goid GO:0042145] [evidence IDA,IMP] [pmid 10944212]; go_process: protein transport [goid GO:0015031] [evidence IMP] [pmid 9184222]; go_process: vacuole organization and biogenesis [goid GO:0007033] [evidence IMP] [pmid 9111041] --- --- --- --- --- --- S0002487 // VPS41 SGDID:S0002487, Chr IV from 604004-606982, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023636 // cdna:GeneFinder chromosome:SGD1:IV:604004:606982:1 // ensembl // 11 // --- /// GENSCAN00000025155 // cdna:Genscan chromosome:SGD1:IV:604778:606982:1 // ensembl // 11 // --- /// YDR080W // cdna:known chromosome:SGD1:IV:604004:606982:1 gene:YDR080W // ensembl // 11 // --- --- No cerevisiae_gene -2.5393822281653 -2.25607213503559 -1.31239363444721 -2.44433211196032 1.05911025759138 Max fold change below threshold 4 2.5393822281653 Max fold change at or above threshold 0.778696922307736 -0.814424694607334 -0.912110651981612 0.94783842428121 279.588066101074 134.239163974789 0.480131952149418 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771068_at YMR137C.S1 Required for a post-incision step in the repair of DNA single and double-strand breaks that result from interstrand crosslinks produced by a variety of mono- and bi-functional psoralen derivatives; induced by UV-irradiation 2.5386024205473 233.249992370605 613.09814453125 PSO2 6281 // DNA repair // inferred from mutant phenotype /// 6302 // double-strand break repair // traceable author statement 5634 // nucleus // inferred from curator 3684 // damaged DNA binding // inferred from mutant phenotype /// 8409 // 5'-3' exonuclease activity // inferred from direct assay /// 8409 // 5'-3' exonuclease activity // inferred from mutant phenotype 559.931884765625 220.566986083984 245.932998657227 666.264404296875 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR137C /GEN=PSO2 /DB_XREF=GI:6323786 /SEG=NC_001145:-542977,544962 /DEF=DNA cross-link repair protein /NOTE=Pso2p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 1736091]; go_function: damaged DNA binding [goid GO:0003684] [evidence IMP] [pmid 7035927]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 1736091]; go_process: double-strand break repair [goid GO:0006302] [evidence TAS] [pmid 12509272] --- --- --- --- --- --- S0004745 // PSO2 SGDID:S0004745, Chr XIII from 544962-542977, reverse complement, Verified ORF // sgd // 10 // --- /// YMR137C // cdna:known chromosome:SGD1:XIII:542977:544962:-1 gene:YMR137C // ensembl // 10 // --- --- No cerevisiae_gene -1.7827332671588 -2.5386024205473 1.21549873314843 -2.27676598025806 1.18990259784145 Max fold change below threshold 4 2.5386024205473 Max fold change at or above threshold 0.611070917970347 -0.905303251730528 -0.791961045733981 1.08619337949416 423.174068450928 223.800237080393 0.528860943440219 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776979_at SPAC1486.10.S1 --- 2.53839103483465 --- --- --- --- 2.76618957519531 6.55931901931763 6.05317115783691 2.0624041557312 0.725830018520355 0.601073980331421 0.5 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1486.10 /GEN=thi1 /DEF=transcription factor --- --- --- --- --- --- SPAC1486.10 // |thi1|ntf1, SPAC6G10.01|transcription factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.34310306186898 2.3712471040075 2.53839103483465 2.18827054086108 -1.34124515193027 Max fold change below threshold 3 2.53839103483465 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779182_at YBR074W.S1 Putative metalloprotease 2.53833901050541 228.665298461914 552.913467407227 --- 6508 // proteolysis and peptidolysis // inferred from sequence similarity --- 4222 // metalloendopeptidase activity // inferred from sequence similarity 502.902374267578 198.122619628906 259.207977294922 602.924560546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR074W /GEN=RDH54 /DB_XREF=GI:37362618 /SEG=NC_001134:+386244,389174 /DEF=Hypothetical ORF /NOTE=Ybr074wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000278 // span:13-35,358-380,393-412,432-454,461-483,493-515,630-652,667-689,694-716 // numtm:9 S0000278 // YBR074W SGDID:S0000278, Chr II from 386281-389211, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021198 // cdna:Genscan chromosome:SGD1:II:386281:389211:1 // ensembl // 11 // --- /// GENEFINDER00000022353 // cdna:GeneFinder chromosome:SGD1:II:387655:389211:1 // ensembl // 11 // --- /// YBR074W // cdna:known chromosome:SGD1:II:386281:389211:1 gene:YBR074W // ensembl // 11 // --- --- No cerevisiae_gene 1.12333309363585 -2.53833901050541 1.05942294803025 -1.94015006604286 1.19888986689508 Max fold change below threshold 4 2.53833901050541 Max fold change at or above threshold 0.580227410847313 -0.997123847111772 -0.680983866385032 1.09788030264949 390.78938293457 193.222500759294 0.494441530904243 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776205_at SPCC5E4.03c.S1 --- 2.53726131611771 --- --- --- --- 2.88205552101135 4.58828163146973 5.47265243530273 1.13589227199554 0.567627012729645 0.194580003619194 0.303710997104645 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC5E4.03c /GEN=taf72 /DEF=transcription initiation factor activity --- --- --- --- --- --- SPCC5E4.03c // |taf72||transcription initiation factor TFIID subunit 5 Taf72|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.06914865939286 1.59201708572902 -1.30930723315356 1.89887127274436 -2.53726131611771 Max fold change below threshold 3 2.53726131611771 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770905_at SPCC965.07c.S1 --- 2.53701522471311 --- --- --- --- 0.620154023170471 0.333860158920288 0.446921497583389 0.244442373514175 0.943848013877869 0.981445014476776 0.991943001747131 0.991943001747131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC965.07c /GEN=gst2 /DEF=glutathione S-transferase (PMID 11997110) --- --- --- --- --- --- SPCC965.07c // |gst2||glutathione S-transferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.03308486372896 -1.85752629237362 -2.48089172733902 -1.38761287278368 -2.53701522471311 Max fold change below threshold 0 2.53701522471311 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773389_at YLR382C.S1 Mitochondrial leucyl-tRNA synthetase, also has a direct role in splicing of several mitochondrial group I introns; indirectly required for mitochondrial genome maintenance 2.53580547923604 212.01676940918 457.817642211914 NAM2 372 // Group I intron splicing // inferred from mutant phenotype /// 6429 // leucyl-tRNA aminoacylation // inferred from direct assay 5739 // mitochondrion // inferred from direct assay 3729 // mRNA binding // inferred from physical interaction /// 4823 // leucine-tRNA ligase activity // inferred from direct assay 421.05615234375 180.027542114258 244.005996704102 494.579132080078 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR382C /GEN=NAM2 /DB_XREF=GI:6323414 /SEG=NC_001144:-882067,884751 /DEF=mitochondrial leucyl tRNA synthetase /NOTE=Nam2p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 1990003]; go_function: leucine-tRNA ligase activity [goid GO:0004823] [evidence IDA] [pmid 1990003]; go_function: mRNA binding [goid GO:0003729] [evidence IPI] [pmid 11142386]; go_process: Group I intron splicing [goid GO:0000372] [evidence IMP] [pmid 2277640]; go_process: leucyl-tRNA aminoacylation [goid GO:0006429] [evidence IDA] [pmid 1990003] --- --- --- --- scop // a.4.5.Restriction endonuclease FokI, N-terminal (recognition) do // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Restriction endonuclease FokI, N-terminal (recognition) domain // 6.19999980926514 /// scop // a.4.5.Restriction endonuclease FokI, N-terminal (recognition) do // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Restriction endonuclease FokI, N-terminal (recognition) domain // 6.5 --- S0004374 // NAM2 SGDID:S0004374, Chr XII from 884751-882067, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018107 // cdna:Genscan chromosome:SGD1:XII:882067:884751:-1 // ensembl // 11 // --- /// GENEFINDER00000024904 // cdna:GeneFinder chromosome:SGD1:XII:882067:884388:-1 // ensembl // 11 // --- /// YLR382C // cdna:known chromosome:SGD1:XII:882067:884751:-1 gene:YLR382C // ensembl // 11 // --- --- No cerevisiae_gene -2.53580547923604 -2.33884297590709 1.27299979242117 -1.72559755920405 1.17461561677005 Max fold change below threshold 4 2.53580547923604 Max fold change at or above threshold 0.584446332341493 -1.0509148243415 -0.616825778226948 1.08329427022696 334.917205810547 147.38555409887 0.440065638736523 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774135_at SPAC14C4.15c.S1 --- 2.53483540082715 --- --- --- --- 6.23733901977539 8.32166767120361 9.79265022277832 3.88177633285522 0.567627012729645 0.303710997104645 0.129638999700546 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC14C4.15c /DEF=dipeptidyl aminopeptidase (predicted) --- --- --- --- --- --- SPAC14C4.15c // ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.7238439895681 1.33416953043916 -2.53483540082715 1.57000448295834 -1.60682596959097 Max fold change below threshold 4 2.53483540082715 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776391_at YOR188W.S1 Protein involved in positive regulation of both 1,3-beta-glucan synthesis and the Pkc1p-MAPK pathway, potential Cdc28p substrate; multicopy suppressor of temperature-sensitive mutations in CDC24 and CDC42, and of mutations in BEM4 2.53447862680734 145.50687789917 299.830947875977 MSB1 30468 // establishment of cell polarity (sensu Fungi) // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay /// 5934 // bud tip // traceable author statement /// 5935 // bud neck // traceable author statement --- 292.171966552734 115.278923034668 175.734832763672 307.489929199219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR188W /GEN=MSB1 /DB_XREF=GI:6324762 /SEG=NC_001147:+685767,689180 /DEF=Protein involved in positive requlation of both 1,3-beta-glucan synthesis and the Pkc1p-MAPK pathway, potential Cdc28p substrate; multicopy suppressor of temperature-sensitive mutations in CDC24 and CDC42, and of mutations in BEM4 /NOTE=Msb1p; go_component: bud neck [goid GO:0005935] [evidence TAS] [pmid 10679030]; go_component: bud tip [goid GO:0005934] [evidence TAS] [pmid 10679030]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IGI] [pmid 10679030] --- --- --- --- --- --- S0005714 // MSB1 SGDID:S0005714, Chr XV from 685767-689180, Verified ORF // sgd // 11 // --- /// GENSCAN00000017605 // cdna:Genscan chromosome:SGD1:XV:686436:689180:1 // ensembl // 11 // --- /// GENEFINDER00000022764 // cdna:GeneFinder chromosome:SGD1:XV:686436:689180:1 // ensembl // 11 // --- /// YOR188W // cdna:known chromosome:SGD1:XV:685767:689180:1 gene:YOR188W // ensembl // 11 // --- --- No cerevisiae_gene 1.10541388031261 -2.53447862680734 -1.3523564238509 -1.66257287731708 1.05242790000429 Max fold change below threshold 4 2.53447862680734 Max fold change at or above threshold 0.750042215627065 -1.15889909403816 -0.506489133760099 0.915346012171197 222.668912887573 92.6655223093728 0.416158327211846 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778071_at SPAC3A11.11c.S1 --- 2.53402199304474 --- --- --- --- 9.30603504180908 14.872462272644 23.5816974639893 8.02248859405518 0.24609400331974 0.0952147990465164 0.0805663987994194 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A11.11c /DEF=aldoketo reductase (predicted) --- --- --- --- --- --- SPAC3A11.11c // |||aldo/keto reductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.02185523857515 1.59815240387842 1.05881153935429 2.53402199304474 -1.15999355221334 Max fold change below threshold 4 2.53402199304474 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779857_at YNL038W.S1 Protein involved in the synthesis of N-acetylglucosaminyl phosphatidylinositol (GlcNAc-PI), the first intermediate in the synthesis of glycosylphosphatidylinositol (GPI) anchors; homologous to the human PIG-H protein 2.53373497568764 132.443935394287 318.259719848633 GPI15 6506 // GPI anchor biosynthesis // inferred from mutant phenotype /// 6506 // GPI anchor biosynthesis // inferred from sequence similarity 506 // glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex // traceable author statement /// 506 // glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex // inferred from sequence similarity 8194 // UDP-glycosyltransferase activity // inferred from curator 274.203643798828 156.666748046875 108.221122741699 362.315795898438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL038W /GEN=GPI15 /DB_XREF=GI:37362689 /SEG=NC_001146:+557018,557781 /DEF=Protein involved in the synthesis of N-acetylglucosaminyl phosphatidylinositol (GlcNAc-PI), the first intermediate in the synthesis of glycosylphosphatidylinositol (GPI) anchors; homologous to the human PIG-H protein /NOTE=Gpi15p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: GPI anchor biosynthesis [goid GO:0006506] [evidence IMP,ISS] [pmid 11746600] --- --- --- --- --- S0004983 // span:57-79,99-121 // numtm:2 S0004983 // GPI15 SGDID:S0004983, Chr XIV from 557019-557609,557684-557782, intron sequence removed, Verified ORF // sgd // 11 // --- /// YNL038W // cdna:known chromosome:SGD1:XIV:557019:557782:1 gene:YNL038W // ensembl // 11 // --- --- No cerevisiae_gene -1.2056134639084 -1.75023511509147 1.13895274457004 -2.53373497568764 1.32133837055883 Max fold change below threshold 4 2.53373497568764 Max fold change at or above threshold 0.425292474093154 -0.597956221719618 -1.01971249317986 1.19237624080633 225.35182762146 114.866401719274 0.509720302389664 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776273_x_at YHR216W.S1 Inosine monophosphate dehydrogenase, catalyzes the first step of GMP biosynthesis, expression is induced by mycophenolic acid resulting in resistance to the drug, expression is repressed by nutrient limitation /// Nonfunctional protein with homology to IMP dehydrogenase; IMD1 is a probable pseudogene that is located close to the telomere and is not expressed at detectable levels /// Hypothetical protein 2.53296480368705 328.882888793945 474.792190551758 IMD2 /// IMD1 6183 // GTP biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 3938 // IMP dehydrogenase activity // traceable author statement /// 3938 // IMP dehydrogenase activity // inferred from mutant phenotype 430.006256103516 224.919372558594 432.846405029297 519.578125 0.00122069998178631 0.00195312988944352 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR216W /GEN=IMD2 /DB_XREF=GI:6322012 /SEG=NC_001140:+554394,555965 /DEF=Inosine monophosphate dehydrogenase, catalyzes the first step of GMP biosynthesis, expression is induced by mycophenolic acid resulting in resistance to the drug, expression is repressed by nutrient limitation /NOTE=Imd2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: IMP dehydrogenase activity [goid GO:0003938] [evidence TAS] [pmid 11441018]; go_process: GTP biosynthesis [goid GO:0006183] [evidence TAS] [pmid 11441018] --- --- --- --- --- --- S0001259 // IMD2 SGDID:S0001259, Chr VIII from 554395-555966, Verified ORF // sgd // 11 // --- /// GENSCAN00000016740 // cdna:Genscan chromosome:SGD1:VIII:554395:555966:1 // ensembl // 11 // --- /// GENEFINDER00000020317 // cdna:GeneFinder chromosome:SGD1:VIII:554395:555966:1 // ensembl // 11 // --- /// YHR216W // cdna:known chromosome:SGD1:VIII:554395:555966:1 gene:YHR216W // ensembl // 11 // --- S0000095 // sgd // 1 // Cross Hyb Matching Probes /// S0002145 // sgd // 1 // Cross Hyb Matching Probes /// GENEFINDER00000018180 // ensembl // 1 // Cross Hyb Matching Probes /// GENSCAN00000020401 // ensembl // 1 // Cross Hyb Matching Probes /// YAR073W // ensembl // 1 // Cross Hyb Matching Probes /// YAR075W // ensembl // 1 // Cross Hyb Matching Probes No cerevisiae_gene 1.32551640491127 -1.91182400702943 -2.53296480368705 1.00660490140659 1.20830364122638 Max fold change below threshold 4 2.53296480368705 Max fold change at or above threshold 0.225246659081385 -1.414697974307 0.24795745807716 0.941493857148452 401.837539672852 125.057199718493 0.311213332184709 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778426_s_at YBR009C.S1 One of two identical histone H4 proteins (see also HHF1); core histone required for chromatin assembly and chromosome function; contributes to telomeric silencing; N-terminal domain involved in maintaining genomic integrity /// One of two identical histone H4 proteins (see also HHF2); core histone required for chromatin assembly and chromosome function; contributes to telomeric silencing; N-terminal domain involved in maintaining genomic integrity 2.53255657344388 3339.87622070313 1543.09826660156 HHF2 /// HHF1 6333 // chromatin assembly or disassembly // traceable author statement 788 // nuclear nucleosome // traceable author statement 3677 // DNA binding // traceable author statement 1585.38256835938 4015.07104492188 2664.68139648438 1500.81396484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR009C /GEN=HHF1 /DB_XREF=GI:6319481 /SEG=NC_001134:-255333,255644 /DEF=One of two identical histone H4 proteins (see also HHF2); core histone required for chromatin assembly and chromosome function; contributes to telomeric silencing; N-terminal domain involved in maintaining genomic integrity /NOTE=Hhf1p; go_component: nuclear nucleosome [goid GO:0000788] [evidence TAS] [pmid 2275823]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 2275823]; go_process: chromatin assembly/disassembly [goid GO:0006333] [evidence TAS] [pmid 2275823] --- --- --- --- --- --- S0000213 // HHF1 SGDID:S0000213, Chr II from 255682-255371, reverse complement, Verified ORF // sgd // 11 // --- /// S0004975 // HHF2 SGDID:S0004975, Chr XIV from 576726-577037, Verified ORF // sgd // 11 // --- /// GENSCAN00000021145 // cdna:Genscan chromosome:SGD1:II:255371:255682:-1 // ensembl // 11 // --- /// GENEFINDER00000022215 // cdna:GeneFinder chromosome:SGD1:II:255371:255682:-1 // ensembl // 11 // --- /// GENSCAN00000020013 // cdna:Genscan chromosome:SGD1:XIV:576726:577037:1 // ensembl // 11 // --- /// YBR009C // cdna:known chromosome:SGD1:II:255371:255682:-1 gene:YBR009C // ensembl // 11 // --- /// YNL030W // cdna:known chromosome:SGD1:XIV:576726:577037:1 gene:YNL030W // ensembl // 11 // --- --- No cerevisiae_gene 1.67838022756423 2.53255657344388 -1.00879329097849 1.68078131402814 -1.05634849188282 Max fold change below threshold 4 2.53255657344388 Max fold change at or above threshold -0.728433717103929 1.33891512406591 0.189909191101732 -0.800390598063718 2441.48724365234 1175.26777686325 0.481373711830298 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777719_at SPBC21B10.03c.S1 --- 2.53254432620181 --- --- --- --- 4.51474285125732 11.4337863922119 3.79526090621948 5.57208204269409 0.303710997104645 0.00805663969367743 0.0771484375 0.091552734375 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21B10.03c /DEF=involved in polyadenylation (predicted) --- --- --- --- --- --- SPBC21B10.03c // |||ataxin-2 homolog|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.09066378879315 2.53254432620181 2.06225957430539 -1.189573777091 1.23419699111818 Max fold change below threshold 4 2.53254432620181 Max fold change at or above threshold APPAAA No 4 0 APAA 3 1 0 No No x = 1
1770307_at YDR055W.S1 Cell wall protein that contains a putative GPI-attachment site; secreted by regenerating protoplasts; up-regulated by activation of the cell integrity pathway, as mediated by Rlm1p; upregulated by cell wall damage via disruption of FKS1 2.53154157466026 2511.62451171875 1086.14492797852 PST1 7047 // cell wall organization and biogenesis // inferred from genetic interaction 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 1005.82135009766 2476.97045898438 2546.27856445313 1166.46850585938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR055W /GEN=PST1 /DB_XREF=GI:6320260 /SEG=NC_001136:+563523,564857 /DEF=Protoplasts-secreted /NOTE=Pst1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002462 // PST1 SGDID:S0002462, Chr IV from 563524-564858, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023633 // cdna:GeneFinder chromosome:SGD1:IV:563524:564858:1 // ensembl // 11 // --- /// GENSCAN00000025139 // cdna:Genscan chromosome:SGD1:IV:563524:564858:1 // ensembl // 11 // --- /// YDR055W // cdna:known chromosome:SGD1:IV:563524:564858:1 gene:YDR055W // ensembl // 11 // --- --- No cerevisiae_gene 1.80450802236031 2.46263460081046 -1.26643970819757 2.53154157466026 1.15971738494726 Max fold change below threshold 4 2.53154157466026 Max fold change at or above threshold -0.960015022939487 0.820832888317292 0.904731382434309 -0.765549247812114 1798.88471984863 826.094749353695 0.459226063926546 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775739_at YLR288C.S1 DNA damage and meiotic pachytene checkpoint protein; subunit of a heterotrimeric complex (Rad17p-Mec3p-Ddc1p) that forms a sliding clamp, loaded onto partial duplex DNA by a clamp loader complex; homolog of human and S. pombe Hus1 2.53141105804628 144.428764343262 316.260559082031 MEC3 77 // DNA damage checkpoint // inferred from mutant phenotype /// 6259 // DNA metabolism // traceable author statement /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype 5634 // nucleus // traceable author statement 3677 // DNA binding // inferred from direct assay 281.198608398438 111.083740234375 177.773788452148 351.322509765625 0.0239257998764515 0.0107421996071935 0.0107421996071935 0.0239257998764515 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR288C /GEN=MEC3 /DB_XREF=GI:6323319 /SEG=NC_001144:-713482,714906 /DEF=Involved in checkpoint control and DNA repair; forms a clamp with Rad17p and Ddc1p that is loaded onto partial duplex DNA /NOTE=Mec3p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 10723032]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 10915872]; go_process: DNA damage response, signal transduction resulting in cell cycle arrest [goid GO:0000077] [evidence IMP] [pmid 9725831]; go_process: DNA metabolism [goid GO:0006259] [evidence TAS] [pmid 10924458]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 9988274] --- --- --- --- --- --- S0004279 // MEC3 SGDID:S0004279, Chr XII from 714906-713482, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018044 // cdna:Genscan chromosome:SGD1:XII:713482:714552:-1 // ensembl // 11 // --- /// GENEFINDER00000024804 // cdna:GeneFinder chromosome:SGD1:XII:713482:714552:-1 // ensembl // 11 // --- /// YLR288C // cdna:known chromosome:SGD1:XII:713482:714906:-1 gene:YLR288C // ensembl // 11 // --- --- No cerevisiae_gene 1.00853128978863 -2.53141105804628 1.16081215360967 -1.58177766726352 1.24937499430234 Max fold change below threshold 4 2.53141105804628 Max fold change at or above threshold 0.476230783105994 -1.11684000418809 -0.492309245850689 1.13291846693278 230.344661712646 106.784249338356 0.463584649821704 PPPPPP Called_P_>2EXP 4 0 PPPP 0 4 0 Yes Yes 3 < x
1776423_at YKL139W.S1 Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I), which phosphorylates the C-terminal repeated domain of the RNA polymerase II large subunit (Rpo21p) to affect both transcription and pre-mRNA 3' end processing 2.5302137397018 170.863136291504 415.416427612305 CTK1 6357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 6468 // protein amino acid phosphorylation // traceable author statement 5634 // nucleus // inferred from direct assay 4672 // protein kinase activity // traceable author statement /// 4693 // cyclin-dependent protein kinase activity // inferred from direct assay 393.621856689453 186.157653808594 155.568618774414 437.210998535156 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL139W /GEN=CTK1 /DB_XREF=GI:6322710 /SEG=NC_001143:+182963,184549 /DEF=Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I), which phosphorylates the C-terminal repeated domain of the RNA polymerase II large subunit (Rpo21p) to affect both transcription and pre-mRNA 3' end processing /NOTE=Ctk1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9110987]; go_function: cyclin-dependent protein kinase activity [goid GO:0004693] [evidence IDA] [pmid 7565723]; go_function: protein kinase activity [goid GO:0004672] [evidence TAS] [pmid 1820212]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 1820212]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence TAS] [pmid 9110987] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 5.0E-81 /// hanks // 3.1.7 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; PCTAIRE1 // 2.0E-78 --- --- S0001622 // CTK1 SGDID:S0001622, Chr XI from 182963-184549, Verified ORF // sgd // 11 // --- /// YKL139W // cdna:known chromosome:SGD1:XI:182963:184549:1 gene:YKL139W // ensembl // 11 // --- --- No cerevisiae_gene 1.32048601196399 -2.11445432748187 1.18239776229259 -2.5302137397018 1.11073862161087 Max fold change below threshold 4 2.5302137397018 Max fold change at or above threshold 0.703376397651766 -0.748876892750323 -0.963000708626757 1.00850120372531 293.139781951904 142.856762144721 0.487333248300497 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776954_at YGL098W.S1 Essential SNARE protein localized to the ER, involved in retrograde traffic from the Golgi to the ER; forms a complex with the SNAREs Sec22p, Sec20p and Ufe1p 2.53011315739333 492.247634887695 415.826721191406 USE1 6888 // ER to Golgi transport // inferred from mutant phenotype /// 6890 // retrograde transport, Golgi to ER // inferred from genetic interaction /// 6890 // retrograde transport, Golgi to ER // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay 5484 // SNAP receptor activity // inferred from genetic interaction /// 5484 // SNAP receptor activity // inferred from sequence similarity /// 5484 // SNAP receptor activity // inferred from physical interaction 398.978790283203 467.011322021484 517.483947753906 432.674652099609 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL098W /GEN=USE1 /DB_XREF=GI:6321340 /SEG=NC_001139:+317343,318080 /DEF=Use1p is a SNARE and forms a complex with the SNAREs Sec22p, Sec20p and Ufe1p. The protein is localized to the ER and use1 mutants show defects in retrograde traffic from the Golgi to the ER /NOTE=Use1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 12853481]; go_function: SNAP receptor activity [goid GO:0005484] [evidence IGI,IPI,ISS] [pmid 12853481]; go_process: retrograde transport, Golgi to ER [goid GO:0006890] [evidence IGI,IMP] [pmid 12853481] --- --- --- --- --- S0003066 // span:217-239 // numtm:1 S0003066 // USE1 SGDID:S0003066, Chr VII from 317345-318082, Verified ORF // sgd // 11 // --- /// GENSCAN00000019278 // cdna:Genscan chromosome:SGD1:VII:317345:318082:1 // ensembl // 11 // --- /// GENEFINDER00000021611 // cdna:GeneFinder chromosome:SGD1:VII:317345:318082:1 // ensembl // 11 // --- /// YGL098W // cdna:known chromosome:SGD1:VII:317345:318082:1 gene:YGL098W // ensembl // 11 // --- --- No cerevisiae_gene 1.86917680843664 1.17051666252732 2.53011315739333 1.2970211960054 1.08445527089921 Max fold change below threshold 4 2.53011315739333 Max fold change at or above threshold -1.08807327584935 0.25639725242656 1.2538459148252 -0.422169891402406 454.037178039551 50.6017278233112 0.111448423765208 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777585_at YJL005W.S1 Adenylate cyclase, required for cAMP production and cAMP-dependent protein kinase signaling; involved in cell cycle control and glucose and nitrogen repression of sporulation 2.52959283865851 733.592620849609 1438.11633300781 CYR1 74 // regulation of cell cycle // inferred from mutant phenotype /// 1324 // age-dependent response to oxidative stress during chronological cell aging // inferred from mutant phenotype /// 7126 // meiosis // inferred from mutant phenotype /// 7188 // G-protein signaling, coupled to cAMP nucleotide second messenger // traceable author statement /// 7265 // Ras protein signal transduction // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 4016 // adenylate cyclase activity // traceable author statement 1406.53405761719 637.126770019531 830.058471679688 1469.69860839844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL005W /GEN=CYR1 /DB_XREF=GI:6322455 /SEG=NC_001142:+425072,431152 /DEF=Required for START A of cell cycle, and glucose and nitrogen repression of sporulation /NOTE=Cyr1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 2196438]; go_function: adenylate cyclase activity [goid GO:0004016] [evidence TAS] [pmid 2196438]; go_process: G-protein signaling, coupled to cAMP nucleotide second messenger [goid GO:0007188] [evidence TAS] [pmid 1875942]; go_process: RAS protein signal transduction [goid GO:0007265] [evidence TAS] [pmid 1875942]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 2581976]; go_process: regulation of cell cycle [goid GO:0000074] [evidence IMP] [pmid 2844421] --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 3.0 --- S0003542 // CYR1 SGDID:S0003542, Chr X from 425072-431152, Verified ORF // sgd // 11 // --- /// GENSCAN00000024130 // cdna:Genscan chromosome:SGD1:X:425072:431152:1 // ensembl // 11 // --- /// GENEFINDER00000024288 // cdna:GeneFinder chromosome:SGD1:X:425072:431152:1 // ensembl // 11 // --- /// YJL005W // cdna:known chromosome:SGD1:X:425072:431152:1 gene:YJL005W // ensembl // 11 // --- --- No cerevisiae_gene -2.52959283865851 -2.20762040429422 -1.0406470325151 -1.69449997271994 1.04490794264041 Max fold change below threshold 4 2.52959283865851 Max fold change at or above threshold 0.772508954182496 -1.08097363365916 -0.616206071102937 0.924670750579606 1085.85447692871 415.114386638838 0.382292835236052 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775174_at YMR113W.S1 Dihydrofolate synthetase, involved in folic acid biosynthesis; catalyzes the conversion of dihydropteroate to dihydrofolate in folate coenzyme biosynthesis 2.52858984866041 141.527389526367 350.407196044922 FOL3 9396 // folic acid and derivative biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 8841 // dihydrofolate synthase activity // inferred from mutant phenotype 343.578704833984 135.877593994141 147.177185058594 357.235687255859 0.000244141003349796 0.00195312988944352 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR113W /GEN=FOL3 /DB_XREF=GI:6323760 /SEG=NC_001145:+494998,496281 /DEF=Dihydrofolate synthetase, involved in folic acid biosynthesis; catalyzes the conversion of dihydropteroate to dihydrofolate in folate coenzyme biosynthesis /NOTE=Fol3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: dihydrofolate synthase activity [goid GO:0008841] [evidence IMP] [pmid 11731153]; go_process: folic acid and derivative biosynthesis [goid GO:0009396] [evidence IMP] [pmid 11731153] --- --- --- --- --- --- S0004719 // FOL3 SGDID:S0004719, Chr XIII from 494998-496281, Verified ORF // sgd // 11 // --- /// GENSCAN00000018807 // cdna:Genscan chromosome:SGD1:XIII:494998:496281:1 // ensembl // 11 // --- /// YMR113W // cdna:known chromosome:SGD1:XIII:494998:496281:1 gene:YMR113W // ensembl // 11 // --- --- No cerevisiae_gene -1.32267650803788 -2.52858984866041 1.40308598380923 -2.33445628612342 1.03974921096601 Max fold change below threshold 4 2.52858984866041 Max fold change at or above threshold 0.80794967392346 -0.911235012120084 -0.817705979761939 0.920991317958564 245.967292785645 120.813727882743 0.491178020111925 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774457_at SPAC17A5.04c.S1 --- 2.52831414308052 --- --- --- --- 4.96228790283203 3.34246850013733 7.32909154891968 6.12657117843628 0.398925989866257 0.24609400331974 0.171387001872063 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A5.04c /GEN=mde10 /DEF=metallo peptidase --- --- --- --- --- --- SPAC17A5.04c // |mde10||peptidase family M12B|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.52831414308052 -1.48461770174593 1.0283995690457 1.47695814761914 1.23462630512425 Max fold change below threshold 4 2.52831414308052 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775220_at YNL279W.S1 Pheromone-regulated multispanning membrane protein involved in membrane fusion during mating; predicted to have 5 transmembrane segments and a coiled coil domain; localizes to the shmoo tip; regulated by Ste12p 2.52812163590727 34.0571279525757 79.1887130737305 PRM1 45026 // plasma membrane fusion // inferred from mutant phenotype /// 45026 // plasma membrane fusion // inferred from expression pattern 16021 // integral to membrane // inferred from sequence similarity /// 43332 // mating projection tip // inferred from direct assay --- 77.1648941040039 30.5226192474365 37.5916366577148 81.212532043457 0.000244141003349796 0.00585938012227416 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL279W /GEN=PRM1 /DB_XREF=GI:6324050 /SEG=NC_001146:+110915,112900 /DEF=Pheromone-regulated multispanning membrane protein involved in membrane fusion during mating; predicted to have 5 transmembrane segments and a coiled coil domain; localizes to the shmoo tip; regulated by Ste12p /NOTE=Prm1p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 11062271]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 11062271]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: plasma membrane fusion [goid GO:0045026] [evidence IEP,IMP] [pmid 11062271] --- --- --- --- --- S0005223 // span:297-319,423-445,629-651 // numtm:3 S0005223 // PRM1 SGDID:S0005223, Chr XIV from 110915-112900, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020435 // cdna:GeneFinder chromosome:SGD1:XIV:111107:112900:1 // ensembl // 11 // --- /// GENSCAN00000019818 // cdna:Genscan chromosome:SGD1:XIV:111140:112900:1 // ensembl // 11 // --- /// YNL279W // cdna:known chromosome:SGD1:XIV:110915:112900:1 gene:YNL279W // ensembl // 11 // --- --- No cerevisiae_gene 1.08082196074275 -2.52812163590727 1.06446211977924 -2.05271440577641 1.05245439634761 Max fold change below threshold 4 2.52812163590727 Max fold change at or above threshold 0.782012549368848 -0.993612568034296 -0.724502090304607 0.936102108970054 56.6229205131531 26.2680868835545 0.463912610750139 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1770698_at SPAC26H5.07c.S1 --- 2.52711889879413 --- --- --- --- 6.81837129592896 10.2534418106079 17.2308349609375 4.93906927108765 0.111571997404099 0.0239257998764515 0.0952147990465164 0.129638999700546 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26H5.07c /DEF=similar to the transmembrane region of mannosyltransferases --- --- --- --- --- --- SPAC26H5.07c // |||seven transmembrane receptor-like protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.07466665905087 1.50379634161753 -1.06585348455029 2.52711889879413 -1.38049719930886 Max fold change below threshold 4 2.52711889879413 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1775553_at YLR347C.S1 Karyopherin beta, forms a dimeric complex with Srp1p (Kap60p) that mediates nuclear import of cargo proteins via a nuclear localization signal (NLS), interacts with nucleoporins to guide transport across the nuclear pore complex 2.52683050628082 1596.65521240234 775.811950683594 KAP95 6606 // protein-nucleus import // traceable author statement 5643 // nuclear pore // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8320 // protein carrier activity // inferred from direct assay 721.491088867188 1370.22473144531 1823.08569335938 830.1328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR347C /GEN=KAP95 /DB_XREF=GI:6323379 /SEG=NC_001144:-823827,826412 /DEF=Karyopherin beta, forms a dimeric complex with Srp1p (Kap60p) that mediates nuclear import of cargo proteins via a nuclear localization signal (NLS), interacts with nucleoporins to guide transport across the nuclear pore complex /NOTE=Kap95p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10684247]; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 10684247]; go_function: protein carrier activity [goid GO:0008320] [evidence IDA] [pmid 11171327]; go_process: protein-nucleus import [goid GO:0006606] [evidence TAS] [pmid 9151683] --- --- --- --- --- --- S0004339 // KAP95 SGDID:S0004339, Chr XII from 826412-823827, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018083 // cdna:Genscan chromosome:SGD1:XII:823827:826412:-1 // ensembl // 11 // --- /// GENEFINDER00000024848 // cdna:GeneFinder chromosome:SGD1:XII:823827:826412:-1 // ensembl // 11 // --- /// YLR347C // cdna:known chromosome:SGD1:XII:823827:826412:-1 gene:YLR347C // ensembl // 11 // --- --- No cerevisiae_gene 1.98603677720243 1.89915683310337 1.40068886405531 2.52683050628082 1.15057943931559 Max fold change below threshold 4 2.52683050628082 Max fold change at or above threshold -0.910136838452834 0.360322385223001 1.24719081372006 -0.697376360490223 1186.23358154297 510.629251603318 0.430462650483329 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774610_at YOR350C.S1 Mitochondrial protein similar to Lucilia illustris mitochondrial cytochrome oxidase 2.52607140553013 161.881477355957 77.1729316711426 MNE1 --- 5739 // mitochondrion // inferred from direct assay --- 66.6966857910156 155.282363891602 168.480590820313 87.6491775512695 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR350C /GEN=MNE1 /DB_XREF=GI:6324926 /SEG=NC_001147:-992859,994850 /DEF=similar to Lucilia illustris mitochondria cytochrome oxidase /NOTE=Mne1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005877 // MNE1 SGDID:S0005877, Chr XV from 994850-992859, reverse complement, Verified ORF // sgd // 11 // --- /// YOR350C // cdna:known chromosome:SGD1:XV:992859:994850:-1 gene:YOR350C // ensembl // 11 // --- --- No cerevisiae_gene 1.14946406273664 2.32818710630025 1.94810884564156 2.52607140553013 1.31414592062199 Max fold change below threshold 4 2.52607140553013 Max fold change at or above threshold -1.05787085461665 0.715956267756288 0.980235702032306 -0.638321115171941 119.52720451355 49.9404237218339 0.417816378497939 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774362_at YER002W.S1 Constituent of 66S pre-ribosomal particles, involved in 60S ribosomal subunit biogenesis 2.52533460979067 768.309448242188 617.257141113281 NOP16 42273 // ribosomal large subunit biogenesis // inferred from mutant phenotype /// 42273 // ribosomal large subunit biogenesis // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 596.744384765625 683.132934570313 853.485961914063 637.769897460938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER002W /GEN=NOP16 /DB_XREF=GI:6320838 /SEG=NC_001137:+156802,157497 /DEF=Constituent of 66S pre-ribosomal particles, involved in 60S ribosomal subunit biogenesis /NOTE=Nop16p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 10684247]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ribosomal large subunit biogenesis [goid GO:0042273] [evidence IMP,IPI] [pmid 11583614] --- --- --- --- --- --- S0000804 // NOP16 SGDID:S0000804, Chr V from 156802-157497, Verified ORF // sgd // 11 // --- /// GENSCAN00000016804 // cdna:Genscan chromosome:SGD1:V:156826:157497:1 // ensembl // 11 // --- /// GENEFINDER00000019670 // cdna:GeneFinder chromosome:SGD1:V:156937:157497:1 // ensembl // 9 // --- /// YER002W // cdna:known chromosome:SGD1:V:156802:157497:1 gene:YER002W // ensembl // 11 // --- --- No cerevisiae_gene 2.52533460979067 1.14476642262602 1.05938370021254 1.4302371060421 1.06874888770244 Max fold change below threshold 4 2.52533460979067 Max fold change at or above threshold -0.851443319186359 -0.0855563088827904 1.42472683747681 -0.487727209407664 692.783294677734 112.795423662358 0.162814872311301 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771334_at YGR166W.S1 Protein involved in biosynthesis of cell wall beta-glucans; subunit of the TRAPP (transport protein particle) complex, which is involved in the late steps of endoplasmic reticulum to Golgi transport 2.52330850029241 296.513130187988 652.522918701172 KRE11 6888 // ER to Golgi transport // inferred from mutant phenotype 30008 // TRAPP complex // inferred from direct assay --- 600.632629394531 354.992492675781 238.033767700195 704.413208007813 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR166W /GEN=KRE11 /DB_XREF=GI:6321605 /SEG=NC_001139:+830518,832200 /DEF=Involved in biosynthetic pathway for cell wall beta-glucans /NOTE=Kre11p; go_component: TRAPP [goid GO:0030008] [evidence IDA] [pmid 10727015]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 10727015] --- --- --- --- --- --- S0003398 // KRE11 SGDID:S0003398, Chr VII from 830520-832202, Verified ORF // sgd // 11 // --- /// GENSCAN00000019471 // cdna:Genscan chromosome:SGD1:VII:830520:832202:1 // ensembl // 11 // --- /// YGR166W // cdna:known chromosome:SGD1:VII:830520:832202:1 gene:YGR166W // ensembl // 11 // --- --- No cerevisiae_gene 1.17857432831696 -1.69195868021664 -1.43844524926801 -2.52330850029241 1.17278544909872 Max fold change below threshold 4 2.52330850029241 Max fold change at or above threshold 0.585961185579017 -0.555346641493285 -1.09876723245261 1.06815268836688 474.51802444458 215.226892247703 0.453569477154475 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773034_at YCR048W.S1 Acyl-CoA:sterol acyltransferase, isozyme of Are2p; endoplasmic reticulum enzyme that contributes the major sterol esterification activity in the absence of oxygen 2.52193930683251 372.153854370117 865.413909912109 ARE1 16125 // sterol metabolism // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay 4772 // sterol O-acyltransferase activity // inferred from direct assay 850.566284179688 337.266754150391 407.040954589844 880.261535644531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR048W /GEN=ARE1 /DB_XREF=GI:6319896 /SEG=NC_001135:+211924,213756 /DEF=Acyl-CoA:sterol acyltransferase, isozyme of Are2p; endoplasmic reticulum enzyme that contributes the major sterol esterification activity in the absence of oxygen /NOTE=Are1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 10672016]; go_function: sterol O-acyltransferase activity [goid GO:0004772] [evidence IDA] [pmid 10672016]; go_process: sterol metabolism [goid GO:0016125] [evidence IMP] [pmid 10672016] --- --- --- --- --- S0000644 // span:188-210,230-252,265-287,291-313,370-392,407-429,450-472,533-555,587-609 // numtm:9 S0000644 // ARE1 SGDID:S0000644, Chr III from 211924-213756, Verified ORF // sgd // 11 // --- /// GENSCAN00000022493 // cdna:Genscan chromosome:SGD1:III:211924:213756:1 // ensembl // 11 // --- /// YCR048W // cdna:known chromosome:SGD1:III:211924:213756:1 gene:YCR048W // ensembl // 11 // --- GENEFINDER00000023318 // ensembl // 6 // Cross Hyb Matching Probes /// YCR050C // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene -2.35666942626812 -2.52193930683251 1.24918457501673 -2.08963317963118 1.03491233078147 Max fold change below threshold 4 2.52193930683251 Max fold change at or above threshold 0.809122295761313 -0.9827397718403 -0.739167090101137 0.912784566180123 618.783882141113 286.461519170581 0.462942761500782 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775176_at YNL254C.S1 Hypothetical protein 2.52190917013108 157.083183288574 242.239204406738 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 215.70344543457 134.972274780273 179.194091796875 268.774963378906 0.000244141003349796 0.00292969006113708 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL254C /GEN=GIS2 /DB_XREF=GI:6324075 /SEG=NC_001146:-168042,169247 /DEF=Hypothetical ORF /NOTE=Ynl254cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.7.Phenylalanyl-tRNA synthetase (PheRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Phenylalanyl-tRNA synthetase (PheRS) // 6.59999990463257 --- S0005198 // YNL254C SGDID:S0005198, Chr XIV from 169247-168042, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019837 // cdna:Genscan chromosome:SGD1:XIV:168042:169247:-1 // ensembl // 11 // --- /// GENEFINDER00000020680 // cdna:GeneFinder chromosome:SGD1:XIV:168042:169247:-1 // ensembl // 11 // --- /// YNL254C // cdna:known chromosome:SGD1:XIV:168042:169247:-1 gene:YNL254C // ensembl // 11 // --- --- No cerevisiae_gene 2.52190917013108 -1.59813151097677 1.67577975092706 -1.20374194970156 1.24603926857735 Max fold change below threshold 4 2.52190917013108 Max fold change at or above threshold 0.283035510816301 -1.14131493033847 -0.361103717423158 1.21938313694533 199.661193847656 56.6792892547183 0.283877343225571 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771133_at YDL031W.S1 Putative ATP-dependent RNA helicase of the DEAD-box protein family, constituent of 66S pre-ribosomal particles; essential protein involved in ribosome biogenesis 2.52151412972827 349.536926269531 875.696899414063 DBP10 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 6365 // 35S primary transcript processing // traceable author statement 5730 // nucleolus // inferred from direct assay 4004 // ATP-dependent RNA helicase activity // traceable author statement 853.099609375 338.328308105469 360.745544433594 898.294189453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL031W /GEN=DBP10 /DB_XREF=GI:6320173 /SEG=NC_001136:+394214,397201 /DEF=Dead box protein 10 /NOTE=Dbp10p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 10871363]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 10871363] --- --- --- --- --- --- S0002189 // DBP10 SGDID:S0002189, Chr IV from 394214-397201, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023650 // cdna:GeneFinder chromosome:SGD1:IV:394214:397201:1 // ensembl // 11 // --- /// GENSCAN00000025076 // cdna:Genscan chromosome:SGD1:IV:394214:397201:1 // ensembl // 11 // --- /// YDL031W // cdna:known chromosome:SGD1:IV:394214:397201:1 gene:YDL031W // ensembl // 11 // --- --- No cerevisiae_gene -1.32083285178111 -2.52151412972827 -1.30809419539321 -2.36482368954674 1.05297690865342 Max fold change below threshold 4 2.52151412972827 Max fold change at or above threshold 0.789824866449203 -0.900854671573002 -0.827229038859021 0.93825884398282 612.616912841797 304.475975306191 0.497008765059706 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769974_at SPAC17A2.14.S1 --- 2.52091970816574 --- --- --- --- 0.907695889472961 0.417245030403137 0.360065370798111 0.402725160121918 0.601073980331421 0.904784977436066 0.919434010982513 0.296142578125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A2.14 /DEF=metal ion transporter --- --- --- --- --- --- SPAC17A2.14 // ||SPAC17G6.01|metal ion transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.28105657529283 -2.17545045077219 1.36565398943173 -2.52091970816574 -2.25388423509019 Max fold change below threshold 0 2.52091970816574 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778971_at SPCC1450.12.S1 --- 2.52071486645671 --- --- --- --- 8.89311599731445 7.11240148544312 17.0532665252686 4.03643798828125 0.0952147990465164 0.0107421996071935 0.0561522990465164 0.0461426004767418 A P M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1450.12 /DEF=involved in intracellular protein transport (predicted) --- --- --- --- --- --- SPCC1450.12 // |||PX domain protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.52071486645671 -1.25036754681466 1.51275213112813 1.91758057922761 -2.2032088745407 Max fold change below threshold 4 2.52071486645671 Max fold change at or above threshold AAPPMP No 4 0 APMP 1 2 1 No No 1 < x = 2
1778089_at YPL252C.S1 Ferredoxin of the mitochondrial matrix required for formation of cellular iron-sulfur proteins; involved in heme A biosynthesis; homologous to human adrenodoxin 2.51975529281147 616.376831054688 435.314605712891 YAH1 6784 // heme a biosynthesis // inferred from genetic interaction /// 6784 // heme a biosynthesis // inferred from mutant phenotype 5759 // mitochondrial matrix // inferred from direct assay 9055 // electron carrier activity // inferred from mutant phenotype /// 9055 // electron carrier activity // inferred from sequence similarity 409.888793945313 547.649108886719 685.104553222656 460.740417480469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL252C /GEN=YAH1 /DB_XREF=GI:6325004 /SEG=NC_001148:-73363,73881 /DEF=Yeast Adrenodoxin Homologue 1; This protein is targeted to the mitochondrial matrix as shown by using a specific polyclonal antibody /NOTE=Yah1p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 10375636]; go_function: electron carrier activity [goid GO:0009055] [evidence IMP,ISS] [pmid 10375636]; go_process: heme a biosynthesis [goid GO:0006784] [evidence IGI,IMP] [pmid 11788607] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 1.20000004768372 --- S0006173 // YAH1 SGDID:S0006173, Chr XVI from 73881-73363, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016993 // cdna:Genscan chromosome:SGD1:XVI:73363:73881:-1 // ensembl // 11 // --- /// GENEFINDER00000021043 // cdna:GeneFinder chromosome:SGD1:XVI:73363:73881:-1 // ensembl // 11 // --- /// YPL252C // cdna:known chromosome:SGD1:XVI:73363:73881:-1 gene:YPL252C // ensembl // 11 // --- YPL251W // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene 2.51975529281147 1.33609192780173 -1.07941141086019 1.67144006701989 1.12406199995295 Max fold change below threshold 4 2.51975529281147 Max fold change at or above threshold -0.962710136386495 0.18101846997417 1.32221594657616 -0.540524280163831 525.845718383789 120.448429964306 0.229056595410742 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776872_at YKL088W.S1 Protein required for cell viability 2.51970749921829 354.286979675293 269.698631286621 --- 9651 // response to salt stress // inferred from genetic interaction /// 15937 // coenzyme A biosynthesis // inferred from sequence similarity /// 15937 // coenzyme A biosynthesis // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay 4633 // phosphopantothenoylcysteine decarboxylase activity // inferred from sequence similarity /// 17076 // purine nucleotide binding // inferred from sequence similarity 209.399063110352 180.949569702148 527.624389648438 329.998199462891 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL088W /GEN=MIF2 /DB_XREF=GI:6322762 /SEG=NC_001143:+274928,276643 /DEF=Protein required for cell viability /NOTE=Ykl088wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14690591]; go_function: phosphopantothenoylcysteine decarboxylase activity [goid GO:0004633] [evidence ISS] [pmid 14690591]; go_function: purine nucleotide binding [goid GO:0017076] [evidence ISS] [pmid 7705654]; go_process: coenzyme A biosynthesis [goid GO:0015937] [evidence ISS] [pmid 10592175]; go_process: coenzyme A biosynthesis [goid GO:0015937] [evidence IPI] [pmid 14690591]; go_process: response to salt stress [goid GO:0009651] [evidence IGI] [pmid 8923737] --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 0.779999971389771 --- S0001571 // YKL088W SGDID:S0001571, Chr XI from 274928-276643, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018352 // cdna:Genscan chromosome:SGD1:XI:274928:276643:1 // ensembl // 11 // --- /// GENEFINDER00000023028 // cdna:GeneFinder chromosome:SGD1:XI:275237:276643:1 // ensembl // 11 // --- /// YKL088W // cdna:known chromosome:SGD1:XI:274928:276643:1 gene:YKL088W // ensembl // 11 // --- --- No cerevisiae_gene 1.89366922834268 -1.15722332722334 1.66906365778129 2.51970749921829 1.57592968450381 Max fold change below threshold 4 2.51970749921829 Max fold change at or above threshold -0.650950625781752 -0.831460811971721 1.36816838345833 0.11424305429514 311.992805480957 157.606027718917 0.505159173385289 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772562_at YER052C.S1 Aspartate kinase (L-aspartate 4-P-transferase); cytoplasmic enzyme that catalyzes the first step in the common pathway for methionine and threonine biosynthesis; expression regulated by Gcn4p and the general control of amino acid synthesis 2.51902448443709 1317.66094970703 1109.751953125 HOM3 6555 // methionine metabolism // traceable author statement /// 6566 // threonine metabolism // traceable author statement /// 9090 // homoserine biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 4072 // aspartate kinase activity // traceable author statement 1051.93774414063 1304.10363769531 1331.21826171875 1167.56616210938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER052C /GEN=HOM3 /DB_XREF=GI:6320893 /SEG=NC_001137:-256374,257957 /DEF=Aspartate kinase (L-aspartate 4-P-transferase); cytoplasmic enzyme that catalyzes the first step in the common pathway for methionine and threonine biosynthesis; expression regulated by Gcn4p and the general control of amino acid synthesis /NOTE=Hom3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: aspartate kinase activity [goid GO:0004072] [evidence TAS] [pmid 9315655]; go_process: homoserine biosynthesis [goid GO:0009090] [evidence TAS]; go_process: methionine metabolism [goid GO:0006555] [evidence TAS] [pmid 9315655]; go_process: threonine metabolism [goid GO:0006566] [evidence TAS] [pmid 9315655] --- --- --- --- --- --- S0000854 // HOM3 SGDID:S0000854, Chr V from 257957-256374, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016846 // cdna:Genscan chromosome:SGD1:V:256374:257951:-1 // ensembl // 11 // --- /// GENEFINDER00000019660 // cdna:GeneFinder chromosome:SGD1:V:256374:257951:-1 // ensembl // 11 // --- /// YER052C // cdna:known chromosome:SGD1:V:256374:257957:-1 gene:YER052C // ensembl // 11 // --- --- No cerevisiae_gene 2.51902448443709 1.2397156057564 -1.10052304215498 1.2654914885731 1.10991944971345 Max fold change below threshold 4 2.51902448443709 Max fold change at or above threshold -1.24957706484419 0.698270095641926 0.907716118128101 -0.356409148925832 1213.70645141602 129.458767951668 0.106663986008009 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769997_at YAL067C.S1 Putative permease, member of the allantoate transporter subfamily of the major facilitator superfamily; mutation confers resistance to ethionine sulfoxide 2.51877042451542 162.968971252441 163.348587036133 SEO1 6810 // transport // inferred from sequence similarity 16020 // membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity 152.146545410156 164.759628295898 161.178314208984 174.550628662109 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL067C /GEN=SEO1 /DB_XREF=GI:6319250 /SEG=NC_001133:-7236,9017 /DEF=Putative permease, member of the allantoate transporter subfamily of the major facilitator superfamily; mutation confers resistance to ethionine sulfoxide /NOTE=Seo1p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 9348664]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 9348664]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 9348664] --- --- --- --- --- S0000062 // span:131-149,176-198,205-227,232-254,266-288,303-322,376-398,413-432,439-461,467-486,499-521,532-554 // numtm:12 S0000062 // SEO1 SGDID:S0000062, Chr I from 9017-7236, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020320 // cdna:Genscan chromosome:SGD1:I:7236:9017:-1 // ensembl // 11 // --- /// YAL067C // cdna:known chromosome:SGD1:I:7236:9017:-1 gene:YAL067C // ensembl // 11 // --- --- No cerevisiae_gene -2.51877042451542 1.08290088251258 2.05796325291273 1.05936229951512 1.14725331548972 Max fold change below threshold 4 2.51877042451542 Max fold change at or above threshold -1.18856629419146 0.172781961373833 -0.213754441265924 1.22953877408355 163.158779144287 9.26514052093501 0.056786037316089 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778195_at SPAC1805.12c.S1 --- 2.51854860724508 --- --- --- --- 17.2188529968262 17.2302341461182 16.660530090332 13.2189178466797 0.00292969006113708 0.00195312988944352 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1805.12c /GEN=uep1 /DEF=ubiquitin family protein --- --- --- --- --- --- SPAC1805.12c // |uep1|ubi2|ubiquitin family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.51854860724508 1.00066097023385 -1.02613136713163 -1.03351171322083 -1.30259172471907 Max fold change below threshold 4 2.51854860724508 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776240_at SPBC14C8.09c.S1 --- 2.51843050507479 --- --- --- --- 0.745509028434753 1.290372133255 0.679632246494293 0.521873116493225 0.725830018520355 0.953857004642487 0.953857004642487 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14C8.09c /DEF=conserved protein (broad species distribution) --- --- --- --- --- --- SPBC14C8.09c // |||conserved protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.51843050507479 1.73086050475368 1.00455620222192 -1.09693004162217 -1.42852544971902 Max fold change below threshold 0 2.51843050507479 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771522_at YLR239C.S1 Lipoyl ligase, involved in the modification of mitochondrial enzymes by the attachment of lipoic acid groups 2.51827090202181 194.887161254883 423.077026367188 LIP2 9249 // protein-lipoylation // inferred from sequence similarity /// 9249 // protein-lipoylation // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 16874 // ligase activity // inferred from sequence similarity /// 16874 // ligase activity // inferred from mutant phenotype 418.877990722656 166.335556030273 223.438766479492 427.276062011719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR239C /GEN=LIP2 /DB_XREF=GI:6323268 /SEG=NC_001144:-616334,617320 /DEF=LIPoyl ligase 2 /NOTE=Lip2p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: ligase activity [goid GO:0016874] [evidence IMP,ISS] [pmid 11356580]; go_process: protein-lipoylation [goid GO:0009249] [evidence IMP,ISS] [pmid 11356580] --- --- --- --- --- --- S0004229 // LIP2 SGDID:S0004229, Chr XII from 617320-616334, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018005 // cdna:Genscan chromosome:SGD1:XII:616334:617320:-1 // ensembl // 11 // --- /// GENEFINDER00000024722 // cdna:GeneFinder chromosome:SGD1:XII:616334:617230:-1 // ensembl // 11 // --- /// YLR239C // cdna:known chromosome:SGD1:XII:616334:617320:-1 gene:YLR239C // ensembl // 11 // --- --- No cerevisiae_gene -1.42819621708575 -2.51827090202181 1.47224211582951 -1.87468807370588 1.02004896765899 Max fold change below threshold 4 2.51827090202181 Max fold change at or above threshold 0.821123270201442 -1.06583043477637 -0.639165052166394 0.883872216741326 308.982093811035 133.836052271008 0.433151483376439 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775466_at YNL018C.S1 Hypothetical protein /// Hypothetical protein 2.51794975994421 7.22824513912201 5.99703216552734 --- --- --- --- 7.28288793563843 2.89238810539246 11.5641021728516 4.71117639541626 0.334473013877869 0.466064006090164 0.129638999700546 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL018C /GEN=ARK1 /DB_XREF=GI:6324310 /SEG=NC_001146:-599934,601772 /DEF=Hypothetical ORF /NOTE=Ynl018cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 5.80000019073486 --- S0004963 // YNL018C SGDID:S0004963, Chr XIV from 601773-599935, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020023 // cdna:Genscan chromosome:SGD1:XIV:599935:601773:-1 // ensembl // 11 // --- /// GENEFINDER00000020433 // cdna:GeneFinder chromosome:SGD1:XIV:599935:601773:-1 // ensembl // 11 // --- /// YNL018C // cdna:known chromosome:SGD1:XIV:599935:601773:-1 gene:YNL018C // ensembl // 11 // --- --- No cerevisiae_gene -1.40065342268787 -2.51794975994421 -1.07698385460962 1.5878456836145 -1.54587460208969 Max fold change below threshold 4 2.51794975994421 Max fold change at or above threshold 0.178238357090121 -0.98932048411967 1.31673504927457 -0.505652922245021 6.61263865232468 3.7604099042209 0.568670103106106 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774306_at SPBC21.05c.S1 --- 2.51783612542597 --- --- --- --- 11.1503829956055 12.7270612716675 7.46547937393188 6.09114551544189 0.00585938012227416 0.0805663987994194 0.149657994508743 0.091064453125 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21.05c /GEN=ral2 /DEF=kelch repeat protein --- --- --- --- --- --- SPBC21.05c // |ral2||kelch repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.51783612542597 1.14140126636757 -1.25483349235156 -1.49359236521912 -1.83058883872298 Max fold change below threshold 4 2.51783612542597 Max fold change at or above threshold PAAPAA No 4 0 PAAA 3 1 0 No No x = 1
1769759_at YFL067W.S1 Hypothetical protein 2.51779840238004 141.060077667236 94.5629196166992 --- --- --- --- 108.076644897461 80.1934280395508 201.926727294922 81.0491943359375 0.00292969006113708 0.00292969006113708 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL067W /DB_XREF=GI:14318452 /SEG=NC_001138:+836,1363 /DEF=Hypothetical ORF /NOTE=Yfl067wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001827 // span:4-26,152-171 // numtm:2 S0001827 // YFL067W SGDID:S0001827, Chr VI from 836-1363, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000023186 // cdna:Genscan chromosome:SGD1:VI:836:1363:1 // ensembl // 11 // --- /// YFL067W // cdna:known chromosome:SGD1:VI:836:1363:1 gene:YFL067W // ensembl // 11 // --- YER190C-A // ensembl // 8 // Cross Hyb Matching Probes /// YGR296C-A // ensembl // 8 // Cross Hyb Matching Probes /// YML133W-A // ensembl // 8 // Cross Hyb Matching Probes /// YNL339W-A // ensembl // 8 // Cross Hyb Matching Probes /// YPL283W-A // ensembl // 8 // Cross Hyb Matching Probes /// S0002153 // sgd // 8 // Negative Strand Matching Probes /// S0002953 // sgd // 8 // Negative Strand Matching Probes /// S0006409 // sgd // 8 // Negative Strand Matching Probes /// S0000992 // sgd // 8 // Negative Strand Matching Probes /// S0003528 // sgd // 8 // Negative Strand Matching Probes /// S0001042 // sgd // 2 // Negative Strand Matching Probes /// S0001262 // sgd // 8 // Negative Strand Matching Probes /// S0001439 // sgd // 9 // Negative Strand Matching Probes /// S0003760 // sgd // 9 // Negative Strand Matching Probes /// S0003989 // sgd // 7 // Negative Strand Matching Probes /// S0003990 // sgd // 7 // Negative Strand Matching Probes /// S0004458 // sgd // 8 // Negative Strand Matching Probes /// S0004459 // sgd // 8 // Negative Strand Matching Probes /// S0004602 // sgd // 8 // Negative Strand Matching Probes /// S0005283 // sgd // 8 // Negative Strand Matching Probes /// S0007526 // sgd // 8 // Negative Strand Matching Probes /// S0006204 // sgd // 8 // Negative Strand Matching Probes /// S0006408 // sgd // 7 // Negative Strand Matching Probes /// AB016599 // gb // 8 // Negative Strand Matching Probes /// GENSCAN00000021051 // ensembl // 8 // Negative Strand Matching Probes /// GENEFINDER00000022310 // ensembl // 4 // Negative Strand Matching Probes /// GENSCAN00000025522 // ensembl // 8 // Negative Strand Matching Probes /// GENEFINDER00000023783 // ensembl // 8 // Negative Strand Matching Probes /// GENSCAN00000016341 // ensembl // 9 // Negative Strand Matching Probes /// GENEFINDER00000019113 // ensembl // 9 // Negative Strand Matching Probes /// GENSCAN00000016744 // ensembl // 8 // Negative Strand Matching Probes /// GENEFINDER00000019735 // ensembl // 8 // Negative Strand Matching Probes /// GENSCAN00000016965 // ensembl // 8 // Negative Strand Matching Probes /// GENEFINDER00000019661 // ensembl // 8 // Negative Strand Matching Probes /// GENEFINDER00000018544 // ensembl // 9 // Negative Strand Matching Probes /// GENSCAN00000019569 // ensembl // 8 // Negative Strand Matching Probes /// GENEFINDER00000021702 // ensembl // 8 // Negative Strand Matching Probes /// GENSCAN00000016510 // ensembl // 7 // Negative Strand Matching Probes /// GENEFINDER00000020212 // ensembl // 7 // Negative Strand Matching Probes /// GENSCAN00000016743 // ensembl // 8 // Negative Strand Matching Probes /// GENEFINDER00000020308 // ensembl // 8 // Negative Strand Matching Probes /// GENSCAN00000023968 // ensembl // 9 // Negative Strand Matching Probes /// GENEFINDER00000024515 // ensembl // 9 // Negative Strand Matching Probes /// GENEFINDER00000024818 // ensembl // 7 // Negative Strand Matching Probes /// GENSCAN00000017634 // ensembl // 7 // Negative Strand Matching Probes /// GENSCAN00000017638 // ensembl // 7 // Negative Strand Matching Probes /// GENEFINDER00000024830 // ensembl // 7 // Negative Strand Matching Probes /// GENSCAN00000018171 // ensembl // 8 // Negative Strand Matching Probes /// GENEFINDER00000024577 // ensembl // 8 // Negative Strand Matching Probes /// GENSCAN00000018172 // ensembl // 8 // Negative Strand Matching Probes /// GENEFINDER00000024799 // ensembl // 8 // Negative Strand Matching Probes /// GENSCAN00000018602 // ensembl // 8 // Negative Strand Matching Probes /// GENEFINDER00000021916 // ensembl // 8 // Negative Strand Matching Probes /// GENSCAN00000019774 // ensembl // 8 // Negative Strand Matching Probes /// GENEFINDER00000020706 // ensembl // 8 // Negative Strand Matching Probes /// GENSCAN00000017839 // ensembl // 8 // Negative Strand Matching Probes /// GENEFINDER00000022814 // ensembl // 8 // Negative Strand Matching Probes /// GENSCAN00000016966 // ensembl // 8 // Negative Strand Matching Probes /// GENEFINDER00000020788 // ensembl // 8 // Negative Strand Matching Probes /// GENSCAN00000017339 // ensembl // 7 // Negative Strand Matching Probes /// GENEFINDER00000021044 // ensembl // 7 // Negative Strand Matching Probes /// YBL113C // ensembl // 8 // Negative Strand Matching Probes /// YDR545W // ensembl // 8 // Negative Strand Matching Probes /// YIL177C // ensembl // 9 // Negative Strand Matching Probes /// YEL077C // ensembl // 8 // Negative Strand Matching Probes /// YER190W // ensembl // 8 // Negative Strand Matching Probes /// YGR296W // ensembl // 8 // Negative Strand Matching Probes /// YHL050C // ensembl // 2 // Negative Strand Matching Probes /// YHR219W // ensembl // 8 // Negative Strand Matching Probes /// YJL225C // ensembl // 9 // Negative Strand Matching Probes /// YLL067C // ensembl // 7 // Negative Strand Matching Probes /// YLL066C // ensembl // 7 // Negative Strand Matching Probes /// YLR466W // ensembl // 8 // Negative Strand Matching Probes /// YLR467W // ensembl // 8 // Negative Strand Matching Probes /// YML133C // ensembl // 8 // Negative Strand Matching Probes /// YNL339C // ensembl // 8 // Negative Strand Matching Probes /// YOR396W // ensembl // 8 // Negative Strand Matching Probes /// YPL283C // ensembl // 8 // Negative Strand Matching Probes /// YPR204W // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene 1.19027205057356 -1.34769952525484 2.51779840238004 1.86836598680966 -1.33346970050681 Max fold change below threshold 4 2.51779840238004 Max fold change at or above threshold -0.169148603274367 -0.65363530539592 1.46154978946445 -0.638765880794162 117.811498641968 57.5520787997077 0.488509860778615 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774519_at SPBC8D2.16c.S1 --- 2.51760468124057 --- --- --- --- 5.66900491714478 5.80019998550415 2.2517454624176 2.62118339538574 0.366210997104645 0.334473013877869 0.5 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8D2.16c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC8D2.16c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.43589264198975 1.02314252153188 1.42305781971466 -2.51760468124057 -2.16276546201396 Max fold change below threshold 3 2.51760468124057 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769458_at SPBC27.02c.S1 --- 2.51681648958118 --- --- --- --- 9.04844188690186 22.7732677459717 16.0652942657471 13.6488151550293 0.00805663969367743 0.018554700538516 0.0107421996071935 0.0107421996071935 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC27.02c /DEF=DASH complex (predicted) --- --- --- --- --- --- SPBC27.02c // |ask1||DASH complex Ask1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.17032583433389 2.51681648958118 1.12121021768703 1.77547631587296 1.50841607048245 Max fold change below threshold 4 2.51681648958118 Max fold change at or above threshold PPPMPP No 4 0 PPPP 0 4 0 No No 3 < x
1772100_at YGR274C.S1 TFIID subunit (145 kDa), involved in RNA polymerase II transcription initiation, has histone acetyltransferase activity, involved in promoter binding and G1/S progression 2.51650854249875 162.664688110352 347.040069580078 TAF1 114 // G1-specific transcription in mitotic cell cycle // inferred from mutant phenotype /// 114 // G1-specific transcription in mitotic cell cycle // inferred from genetic interaction /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 6468 // protein amino acid phosphorylation // inferred from sequence similarity 5669 // transcription factor TFIID complex // traceable author statement /// 5669 // transcription factor TFIID complex // inferred from direct assay 4402 // histone acetyltransferase activity // inferred from direct assay /// 4674 // protein serine/threonine kinase activity // inferred from sequence similarity /// 16251 // general RNA polymerase II transcription factor activity // traceable author statement 331.994659423828 151.855026245117 173.474349975586 362.085479736328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR274C /GEN=TAF1 /DB_XREF=GI:6321713 /SEG=NC_001139:-1039900,1043100 /DEF=TFIID subunit (145 kDa), involved in RNA polymerase II transcription initiation, has histone acetyltransferase activity, involved in promoter binding and G1/S progression /NOTE=Taf1p; go_component: transcription factor TFIID complex [goid GO:0005669] [evidence TAS] [pmid 9118213]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9118213]; go_function: histone acetyltransferase activity [goid GO:0004402] [evidence IDA] [pmid 8980232]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence ISS] [pmid 9118213]; go_process: G1-specific transcription in mitotic cell cycle [goid GO:0000114] [evidence IGI,IMP] [pmid 9288741]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence ISS] [pmid 9118213]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 9118213] --- --- --- --- scop // a.4.1.Paired domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Paired domain // 1.70000004768372 --- S0003506 // TAF1 SGDID:S0003506, Chr VII from 1043101-1039901, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019551 // cdna:Genscan chromosome:SGD1:VII:1039901:1043101:-1 // ensembl // 11 // --- /// GENEFINDER00000021550 // cdna:GeneFinder chromosome:SGD1:VII:1039901:1043101:-1 // ensembl // 11 // --- /// YGR274C // cdna:known chromosome:SGD1:VII:1039901:1043101:-1 gene:YGR274C // ensembl // 11 // --- --- No cerevisiae_gene -2.51650854249875 -2.18626059099248 1.11978470789198 -1.91379682051296 1.09063645892594 Max fold change below threshold 4 2.51650854249875 Max fold change at or above threshold 0.717478887813488 -0.957949718843795 -0.756874404125697 0.997345235156004 254.852378845215 107.518537324079 0.421885555125152 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772919_at YHR156C.S1 Nuclear protein that physically interacts with Irr1p, a component of the cohesin complex; may link together proteins involved in chromosome segregation, mRNA splicing and DNA replication 2.51621442910994 182.230316162109 83.203670501709 LIN1 --- 785 // chromatin // inferred from direct assay /// 5634 // nucleus // inferred from direct assay 5515 // protein binding // inferred from physical interaction 83.1673278808594 155.193801879883 209.266830444336 83.2400131225586 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR156C /GEN=LIN1 /DB_XREF=GI:6321950 /SEG=NC_001140:-411385,412407 /DEF=LIN element of a link between sister chromatid cohesion, DNA replicarion and splicing /NOTE=Lin1p; go_component: chromatin [goid GO:0000785] [evidence IDA] [pmid 12402242]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12402242]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12402242]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.1.Recombinase DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Recombinase DNA-binding domain // 2.90000009536743 --- S0001199 // LIN1 SGDID:S0001199, Chr VIII from 412408-411386, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016683 // cdna:Genscan chromosome:SGD1:VIII:411386:411928:-1 // ensembl // 11 // --- /// GENEFINDER00000020104 // cdna:GeneFinder chromosome:SGD1:VIII:411386:412408:-1 // ensembl // 11 // --- /// YHR156C // cdna:known chromosome:SGD1:VIII:411386:412408:-1 gene:YHR156C // ensembl // 11 // --- --- No cerevisiae_gene 1.07786644929028 1.86604290211421 1.4991681426905 2.51621442910994 1.00087396389365 Max fold change below threshold 4 2.51621442910994 Max fold change at or above threshold -0.808488023837116 0.366747794555117 1.24904226837253 -0.807302039090528 132.716993331909 61.2868267558066 0.461785828756199 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776644_at YKR058W.S1 Self-glucosylating initiator of glycogen synthesis, also glucosylates n-dodecyl-beta-D-maltoside; similar to mammalian glycogenin 2.51585413952599 928.239379882813 501.15185546875 GLG1 5978 // glycogen biosynthesis // inferred from genetic interaction --- 8466 // glycogenin glucosyltransferase activity // inferred from genetic interaction /// 8466 // glycogenin glucosyltransferase activity // inferred from sequence similarity 500.461547851563 895.054138183594 961.424621582031 501.842163085938 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR058W /GEN=GLG1 /DB_XREF=GI:6322911 /SEG=NC_001143:+552820,554262 /DEF=self-glucosylating initiator of glycogen synthesis; similar to mammalian glycogenin /NOTE=Glg1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: glycogenin glucosyltransferase activity [goid GO:0008466] [evidence IGI,ISS] [pmid 8524228]; go_process: glycogen biosynthesis [goid GO:0005978] [evidence IGI] [pmid 8524228] --- --- --- --- --- --- S0001766 // GLG1 SGDID:S0001766, Chr XI from 552820-554262, Verified ORF // sgd // 11 // --- /// GENSCAN00000018466 // cdna:Genscan chromosome:SGD1:XI:552820:554262:1 // ensembl // 11 // --- /// GENEFINDER00000023098 // cdna:GeneFinder chromosome:SGD1:XI:552820:554262:1 // ensembl // 11 // --- /// YKR058W // cdna:known chromosome:SGD1:XI:552820:554262:1 gene:YKR058W // ensembl // 11 // --- --- No cerevisiae_gene 2.51585413952599 1.78845735906381 -1.09375574836031 1.92107590624963 1.00275868393946 Max fold change below threshold 4 2.51585413952599 Max fold change at or above threshold -0.863624225206874 0.727064503142857 0.994618386372598 -0.858058664308581 714.695617675781 248.063988446944 0.347090400880948 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777813_at SPBC14C8.01c.S1 --- 2.51570779576703 --- --- --- --- 2.40601778030396 4.86693954467773 4.67960119247437 0.956397950649261 0.828612983226776 0.533936023712158 0.5 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14C8.01c /GEN=cut2 /DEF=securin --- --- --- --- --- --- SPBC14C8.01c // |cut2|SPBC1815.02c|securin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.64557819662742 2.02281944236625 -1.18438331337956 1.94495702849012 -2.51570779576703 Max fold change below threshold 2 2.51570779576703 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774082_at YFR021W.S1 Phosphatidylinositol 3,5-bisphosphate-binding protein of the vacuolar membrane, predicted to fold as a seven-bladed beta-propeller; required for recycling of Atg9p through the pre-autophagosomal structure 2.51539940922781 415.70036315918 508.688842773438 ATG18 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6623 // protein-vacuolar targeting // inferred from direct assay /// 6624 // vacuolar protein processing or maturation // inferred from mutant phenotype /// 6624 // vacuolar protein processing or maturation // inferred from direct assay /// 6914 // autophagy // inferred from mutant phenotype /// 6914 // autophagy // inferred from direct assay /// 7033 // vacuole organization and biogenesis // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from direct assay 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 35091 // phosphoinositide binding // inferred from direct assay 466.842102050781 370.182373046875 461.218353271484 550.535583496094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR021W /GEN=ATG18 /DB_XREF=GI:16740527 /SEG=NC_001138:+194800,196302 /DEF=Phosphatidylinositol 3,5-bisphosphate-binding protein of the vacuolar membrane, predicted to fold as a seven-bladed beta-propeller; required for recycling of Atg9p through the pre-autophagosomal structure /NOTE=Atg18p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 11707261]; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 15103325]; go_function: phosphoinositide binding [goid GO:0035091] [evidence IDA] [pmid 15103325]; go_process: autophagy [goid GO:0006914] [evidence IDA,IMP] [pmid 11707261]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IDA,IMP] [pmid 11707261]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IDA,IMP] [pmid 11470404]; go_process: vacuolar protein processing/maturation [goid GO:0006624] [evidence IDA,IMP] [pmid 11707261]; go_process: vacuole organization and biogenesis [goid GO:0007033] [evidence IMP] [pmid 15103325] --- --- --- --- --- --- S0001917 // ATG18 SGDID:S0001917, Chr VI from 194800-196302, Verified ORF // sgd // 11 // --- /// GENSCAN00000023262 // cdna:Genscan chromosome:SGD1:VI:194800:196302:1 // ensembl // 11 // --- /// GENEFINDER00000018518 // cdna:GeneFinder chromosome:SGD1:VI:195097:196302:1 // ensembl // 11 // --- /// YFR021W // cdna:known chromosome:SGD1:VI:194800:196302:1 gene:YFR021W // ensembl // 11 // --- --- No cerevisiae_gene -2.51539940922781 -1.26111380779243 1.17508502379673 -1.01219324586588 1.1792757788504 Max fold change below threshold 4 2.51539940922781 Max fold change at or above threshold 0.0630638271216393 -1.24855180286154 -0.0132471337514924 1.19873510949139 462.194602966309 73.6951640360872 0.159446180381858 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770367_at YFR035C.S1 Hypothetical protein 2.51527004647798 37.9396305084229 29.7469358444214 --- --- --- --- 36.1768493652344 44.6964950561523 31.1827659606934 23.3170223236084 0.0239257998764515 0.00292969006113708 0.00195312988944352 0.014160200022161 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR035C /GEN=PHO4 /DB_XREF=GI:14318560 /SEG=NC_001138:-226109,226453 /DEF=Hypothetical ORF /NOTE=Yfr035cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001931 // span:60-82,89-111 // numtm:2 S0001931 // YFR035C SGDID:S0001931, Chr VI from 226453-226109, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YFR035C // cdna:known chromosome:SGD1:VI:226109:226453:-1 gene:YFR035C // ensembl // 11 // --- YFR034W-A // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene 1.33939052742308 1.23549993546716 -2.51527004647798 -1.16015524122639 -1.55152098167378 Max fold change below threshold 4 2.51527004647798 Max fold change at or above threshold 0.2602949256161 1.21060889229289 -0.296764297532503 -1.17413952037649 33.8432831764221 8.96508521358559 0.264899985230492 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1775087_at YCL051W.S1 Protein involved in control of cell wall structure and stress response; inhibits Cbk1p protein kinase activity; overproduction confers resistance to cell-wall degrading enzymes 2.5150004997547 409.665832519531 529.296768188477 LRE1 7047 // cell wall organization and biogenesis // inferred from genetic interaction /// 9408 // response to heat // inferred from direct assay 9277 // cell wall (sensu Fungi) // traceable author statement 4860 // protein kinase inhibitor activity // inferred from direct assay /// 30528 // transcription regulator activity // inferred from direct assay 502.970550537109 347.889923095703 471.441741943359 555.622985839844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL051W /GEN=LRE1 /DB_XREF=GI:10383756 /SEG=NC_001135:+35865,37616 /DEF=involved in laminarase resistance /NOTE=Lre1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence TAS] [pmid 11532139]; go_function: protein kinase inhibitor activity [goid GO:0004860] [evidence IDA] [pmid 11580836]; go_function: transcription regulator activity [goid GO:0030528] [evidence IDA] [pmid 11580836]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IGI] [pmid 11532139]; go_process: response to heat [goid GO:0009408] [evidence IDA] [pmid 11580836] --- --- --- --- --- --- S0000556 // LRE1 SGDID:S0000556, Chr III from 35865-37616, Verified ORF // sgd // 11 // --- /// GENSCAN00000022426 // cdna:Genscan chromosome:SGD1:III:35865:37616:1 // ensembl // 11 // --- /// GENEFINDER00000023313 // cdna:GeneFinder chromosome:SGD1:III:35865:37616:1 // ensembl // 11 // --- /// YCL051W // cdna:known chromosome:SGD1:III:35865:37616:1 gene:YCL051W // ensembl // 11 // --- --- No cerevisiae_gene -2.5150004997547 -1.44577499130018 1.17148624878112 -1.06687742257142 1.10468293868599 Max fold change below threshold 4 2.5150004997547 Max fold change at or above threshold 0.379757689470005 -1.37880843060447 0.0222307983679526 0.976819942766511 469.481300354004 88.1858382639822 0.187836742799952 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776664_at YFL053W.S1 Dihydroxyacetone kinase, required for detoxification of dihydroxyacetone (DHA); involved in stress adaptation 2.51482662319371 0.991768151521683 0.457173854112625 DAK2 6950 // response to stress // inferred from mutant phenotype /// 19563 // glycerol catabolism // inferred from sequence similarity --- 4371 // glycerone kinase activity // inferred from direct assay /// 4371 // glycerone kinase activity // inferred from sequence similarity 0.549745917320251 1.38251566886902 0.601020634174347 0.364601790904999 0.981445014476776 0.969726979732513 0.994140982627869 0.981445014476776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL053W /GEN=DAK2 /DB_XREF=GI:14318466 /SEG=NC_001138:+23423,25198 /DEF=dihydroxyacetone kinase /NOTE=Dak2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: glycerone kinase activity [goid GO:0004371] [evidence IDA] [pmid 12401799]; go_function: glycerone kinase activity [goid GO:0004371] [evidence ISS] [pmid 9038161]; go_process: glycerol catabolism [goid GO:0019563] [evidence ISS] [pmid 9038161]; go_process: response to stress [goid GO:0006950] [evidence IMP] [pmid 12401799] --- --- --- --- --- --- S0001841 // DAK2 SGDID:S0001841, Chr VI from 23423-25198, Verified ORF // sgd // 10 // --- /// GENEFINDER00000018572 // cdna:GeneFinder chromosome:SGD1:VI:23423:25198:1 // ensembl // 10 // --- /// GENSCAN00000023196 // cdna:Genscan chromosome:SGD1:VI:23423:25198:1 // ensembl // 10 // --- /// YFL053W // cdna:known chromosome:SGD1:VI:23423:25198:1 gene:YFL053W // ensembl // 10 // --- --- No cerevisiae_gene 1.04188608603126 2.51482662319371 1.23832070974019 1.09326984564803 -1.50779818156048 Max fold change below threshold 0 2.51482662319371 Max fold change at or above threshold -0.388023367061101 1.4613626101363 -0.274154266798544 -0.79918497627666 0.724471002817154 0.450295266546123 0.621550434448196 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776719_at YLR393W.S1 Mitochondrial inner membrane protein required for assembly of the F0 sector of mitochondrial F1F0 ATP synthase, interacts genetically with ATP6 2.51476693866708 51.5557651519775 21.2081050872803 ATP10 6461 // protein complex assembly // inferred from direct assay 5740 // mitochondrial membrane // inferred from physical interaction 51087 // chaperone binding // inferred from direct assay 22.4797992706299 46.5800743103027 56.5314559936523 19.9364109039307 0.00415039015933871 0.000244141003349796 0.000244141003349796 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR393W /GEN=ATP10 /DB_XREF=GI:6323425 /SEG=NC_001144:+907079,907918 /DEF=Mitochondrial inner membrane protein required for assembly of the F0 sector of mitochondrial F1F0 ATP synthase, interacts genetically with ATP6 /NOTE=Atp10p; go_component: mitochondrial membrane [goid GO:0005740] [evidence TAS] [pmid 8811190]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 8811190]; go_process: protein complex assembly [goid GO:0006461] [evidence TAS] [pmid 8811190] --- --- --- --- --- --- S0004385 // ATP10 SGDID:S0004385, Chr XII from 907079-907918, Verified ORF // sgd // 11 // --- /// GENSCAN00000018116 // cdna:Genscan chromosome:SGD1:XII:907079:907918:1 // ensembl // 11 // --- /// YLR393W // cdna:known chromosome:SGD1:XII:907079:907918:1 gene:YLR393W // ensembl // 11 // --- --- No cerevisiae_gene 2.17873187164753 2.072085864715 2.1340713458272 2.51476693866708 -1.12757503740043 Max fold change below threshold 4 2.51476693866708 Max fold change at or above threshold -0.771654523449591 0.566059799927694 1.11842303201933 -0.912828308497435 36.3819351196289 18.01601030841 0.495191095503052 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769913_s_at YDL244W.S1 Protein involved in synthesis of the thiamine precursor hydroxymethylpyrimidine (HMP); member of a subtelomeric gene family including THI5, THI11, THI12, and THI13 /// Protein involved in synthesis of the thiamine precursor hydroxymethylpyrimidine (HMP); member of a subtelomeric gene family including THI5, THI11, THI12, and THI13 /// Protein involved in synthesis of the thiamine precursor hydroxymethylpyrimidine (HMP); member of a subtelomeric gene family including THI5, THI11, THI12, and THI13 /// Protein involved in synthesis of the thiamine precursor hydroxymethylpyrimidine (HMP); member of a subtelomeric gene family including THI5, THI11, THI12, and THI13 2.5145949081441 163.187797546387 160.145011901855 THI12 /// THI11 /// THI5 /// THI13 9228 // thiamin biosynthesis // traceable author statement --- 5515 // protein binding // inferred from physical interaction 146.184906005859 130.091384887695 196.284210205078 174.105117797852 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL244W /GEN=THI13 /DB_XREF=GI:6319957 /SEG=NC_001136:+16204,17226 /DEF=Product of gene unknown /NOTE=Thi13p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: thiamin biosynthesis [goid GO:0009228] [evidence TAS] [pmid 9655908] --- --- --- --- --- --- S0002403 // THI13 SGDID:S0002403, Chr IV from 16204-17226, Verified ORF // sgd // 11 // --- /// S0001836 // THI5 SGDID:S0001836, Chr VI from 12929-13951, Verified ORF // sgd // 11 // --- /// S0003917 // THI11 SGDID:S0003917, Chr X from 729511-728489, reverse complement, Verified ORF // sgd // 11 // --- /// S0005276 // THI12 SGDID:S0005276, Chr XIV from 14832-15854, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023473 // cdna:GeneFinder chromosome:SGD1:IV:16204:17226:1 // ensembl // 11 // --- /// GENSCAN00000024920 // cdna:Genscan chromosome:SGD1:IV:16204:17226:1 // ensembl // 11 // --- /// GENEFINDER00000018513 // cdna:GeneFinder chromosome:SGD1:VI:12929:13951:1 // ensembl // 11 // --- /// GENSCAN00000023192 // cdna:Genscan chromosome:SGD1:VI:13037:13951:1 // ensembl // 11 // --- /// GENSCAN00000024259 // cdna:Genscan chromosome:SGD1:X:728489:729511:-1 // ensembl // 11 // --- /// GENEFINDER00000024406 // cdna:GeneFinder chromosome:SGD1:X:728489:729511:-1 // ensembl // 11 // --- /// GENEFINDER00000020507 // cdna:GeneFinder chromosome:SGD1:XIV:14832:15854:1 // ensembl // 11 // --- /// GENSCAN00000019778 // cdna:Genscan chromosome:SGD1:XIV:14940:15854:1 // ensembl // 11 // --- /// YDL244W // cdna:known chromosome:SGD1:IV:16204:17226:1 gene:YDL244W // ensembl // 11 // --- /// YFL058W // cdna:known chromosome:SGD1:VI:12929:13951:1 gene:YFL058W // ensembl // 11 // --- /// YJR156C // cdna:known chromosome:SGD1:X:728489:729511:-1 gene:YJR156C // ensembl // 11 // --- /// YNL332W // cdna:known chromosome:SGD1:XIV:14832:15854:1 gene:YNL332W // ensembl // 11 // --- --- No cerevisiae_gene -2.5145949081441 -1.12370935348299 1.43101626303942 1.34271188160295 1.19099243933483 Max fold change below threshold 4 2.5145949081441 Max fold change at or above threshold -0.526917718431447 -1.07466581333059 1.17822798768268 0.423355544079352 161.666404724121 29.3812452622541 0.181739955882562 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774766_s_at YBL112C.S1 Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// subtelomerically-encoded DNA helicase /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein 2.51437206789812 500.062561035156 756.861389160156 YRF1-5 /// YRF1-4 /// YRF1-7 /// YRF1-6 /// YRF1-3 /// YRF1-2 /// YRF1-1 722 // telomerase-independent telomere maintenance // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay /// 5634 // nucleus // inferred from curator 4386 // helicase activity // inferred from sequence similarity /// 3678 // DNA helicase activity // inferred from direct assay 680.754089355469 336.129638671875 663.995483398438 832.968688964844 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL112C /DB_XREF=GI:6319356 /SEG=NC_001134:-2582,2899 /DEF=Hypothetical ORF /NOTE=Ybl112cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 0.239999994635582 /// scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 2.40000009536743 /// scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 5.0 /// scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 7.30000019073486 --- S0002152 // YBL112C SGDID:S0002152, Chr II from 2899-2582, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0002153 // YBL113C SGDID:S0002153, Chr II from 2658-280, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0002953 // YRF1-1 SGDID:S0002953, Chr IV from 1526304-1531694, Verified ORF // sgd // 11 // --- /// S0006409 // YEL077C SGDID:S0006409, Chr V from 4097-264, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0000992 // YRF1-2 SGDID:S0000992, Chr V from 571475-576520, Verified ORF // sgd // 11 // --- /// S0003528 // YRF1-3 SGDID:S0003528, Chr VII from 1084870-1084888,1085037-1090597, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0001262 // YHR219W SGDID:S0001262, Chr VIII from 560172-562046, Uncharacterized ORF // sgd // 11 // --- /// S0001439 // YIL177C SGDID:S0001439, Chr IX from 6147-4987,4598-483, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0003760 // YJL225C SGDID:S0003760, Chr X from 6130-4970,4581-466, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0003989 // YLL066C SGDID:S0003989, Chr XII from 9836-9550,9450-6120, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0003990 // YLL067C SGDID:S0003990, Chr XII from 4301-4015,3915-585, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0004458 // YRF1-4 SGDID:S0004458, Chr XII from 1067084-1071232, Verified ORF // sgd // 11 // --- /// S0004459 // YRF1-5 SGDID:S0004459, Chr XII from 1072505-1077895, Verified ORF // sgd // 11 // --- /// S0004602 // YML133C SGDID:S0004602, Chr XIII from 4684-3891,3791-461, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0005283 // YRF1-6 SGDID:S0005283, Chr XIV from 6098-6080,5931-371, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0007526 // YOR396W SGDID:S0007526, Chr XV from 1087185-1090859, Uncharacterized ORF // sgd // 11 // --- /// S0006204 // YRF1-7 SGDID:S0006204, Chr XVI from 6007-5989,5840-280, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0006408 // YPR204W SGDID:S0006408, Chr XVI from 944599-947697, Uncharacterized ORF // sgd // 11 // --- /// AB016599 // Saccharomyces cerevisiae mRNA for Y'-helicase protein 1, complete cds. // gb // 11 // --- /// GENSCAN00000021051 // cdna:Genscan chromosome:SGD1:II:280:2658:-1 // ensembl // 11 // --- /// GENSCAN00000025522 // cdna:Genscan chromosome:SGD1:IV:1526304:1531694:1 // ensembl // 11 // --- /// GENEFINDER00000023783 // cdna:GeneFinder chromosome:SGD1:IV:1526496:1531694:1 // ensembl // 11 // --- /// GENSCAN00000016341 // cdna:Genscan chromosome:SGD1:IX:483:4712:-1 // ensembl // 11 // --- /// GENEFINDER00000019113 // cdna:GeneFinder chromosome:SGD1:IX:483:4997:-1 // ensembl // 11 // --- /// GENSCAN00000016744 // cdna:Genscan chromosome:SGD1:V:264:4097:-1 // ensembl // 11 // --- /// GENEFINDER00000019735 // cdna:GeneFinder chromosome:SGD1:V:264:4407:-1 // ensembl // 11 // --- /// GENSCAN00000016965 // cdna:Genscan chromosome:SGD1:V:571475:576520:1 // ensembl // 11 // --- /// GENEFINDER00000019661 // cdna:GeneFinder chromosome:SGD1:V:571640:576520:1 // ensembl // 11 // --- /// GENSCAN00000019569 // cdna:Genscan chromosome:SGD1:VII:1085210:1090597:1 // ensembl // 11 // --- /// GENEFINDER00000021702 // cdna:GeneFinder chromosome:SGD1:VII:1085402:1090597:1 // ensembl // 11 // --- /// GENEFINDER00000020212 // cdna:GeneFinder chromosome:SGD1:VIII:445:4348:-1 // ensembl // 11 // --- /// GENSCAN00000016743 // cdna:Genscan chromosome:SGD1:VIII:560172:562046:1 // ensembl // 11 // --- /// GENSCAN00000023968 // cdna:Genscan chromosome:SGD1:X:466:4695:-1 // ensembl // 11 // --- /// GENEFINDER00000024515 // cdna:GeneFinder chromosome:SGD1:X:466:4980:-1 // ensembl // 11 // --- /// GENEFINDER00000024818 // cdna:GeneFinder chromosome:SGD1:XII:455:4616:-1 // ensembl // 11 // --- /// GENSCAN00000017634 // cdna:Genscan chromosome:SGD1:XII:585:3578:-1 // ensembl // 11 // --- /// GENSCAN00000017638 // cdna:Genscan chromosome:SGD1:XII:6120:9113:-1 // ensembl // 11 // --- /// GENEFINDER00000024830 // cdna:GeneFinder chromosome:SGD1:XII:6120:9113:-1 // ensembl // 11 // --- /// GENSCAN00000018171 // cdna:Genscan chromosome:SGD1:XII:1067084:1071232:1 // ensembl // 11 // --- /// GENEFINDER00000024577 // cdna:GeneFinder chromosome:SGD1:XII:1067276:1071232:1 // ensembl // 11 // --- /// GENSCAN00000018172 // cdna:Genscan chromosome:SGD1:XII:1072505:1077895:1 // ensembl // 11 // --- /// GENEFINDER00000024799 // cdna:GeneFinder chromosome:SGD1:XII:1072697:1077895:1 // ensembl // 11 // --- /// GENSCAN00000018602 // cdna:Genscan chromosome:SGD1:XIII:461:3454:-1 // ensembl // 11 // --- /// GENEFINDER00000021916 // cdna:GeneFinder chromosome:SGD1:XIII:461:3454:-1 // ensembl // 11 // --- /// GENSCAN00000019774 // cdna:Genscan chromosome:SGD1:XIV:371:5758:-1 // ensembl // 11 // --- /// GENEFINDER00000020706 // cdna:GeneFinder chromosome:SGD1:XIV:371:5566:-1 // ensembl // 11 // --- /// GENSCAN00000017839 // cdna:Genscan chromosome:SGD1:XV:1085469:1090859:1 // ensembl // 11 // --- /// GENEFINDER00000022814 // cdna:GeneFinder chromosome:SGD1:XV:1085661:1090859:1 // ensembl // 11 // --- /// GENSCAN00000016966 // cdna:Genscan chromosome:SGD1:XVI:280:5667:-1 // ensembl // 11 // --- /// GENEFINDER00000020788 // cdna:GeneFinder chromosome:SGD1:XVI:280:5475:-1 // ensembl // 11 // --- /// GENSCAN00000017339 // cdna:Genscan chromosome:SGD1:XVI:944599:947697:1 // ensembl // 11 // --- /// GENEFINDER00000021044 // cdna:GeneFinder chromosome:SGD1:XVI:944599:947697:1 // ensembl // 11 // --- /// YBL113C // cdna:known chromosome:SGD1:II:280:2658:-1 gene:YBL113C // ensembl // 11 // --- /// YBL112C // cdna:known chromosome:SGD1:II:2582:2899:-1 gene:YBL112C // ensembl // 11 // --- /// YDR545W // cdna:known chromosome:SGD1:IV:1526304:1531694:1 gene:YDR545W // ensembl // 11 // --- /// YIL177C // cdna:known chromosome:SGD1:IX:483:6147:-1 gene:YIL177C // ensembl // 11 // --- /// YEL077C // cdna:known chromosome:SGD1:V:264:4097:-1 gene:YEL077C // ensembl // 11 // --- /// YER190W // cdna:known chromosome:SGD1:V:571475:576520:1 gene:YER190W // ensembl // 11 // --- /// YGR296W // cdna:known chromosome:SGD1:VII:1084870:1090597:1 gene:YGR296W // ensembl // 11 // --- /// YHR218W-A // cdna:known chromosome:SGD1:VIII:559931:560248:1 gene:YHR218W-A // ensembl // 11 // --- /// YHR219W // cdna:known chromosome:SGD1:VIII:560172:562046:1 gene:YHR219W // ensembl // 11 // --- /// YJL225C // cdna:known chromosome:SGD1:X:466:6130:-1 gene:YJL225C // ensembl // 11 // --- /// YLL067C // cdna:known chromosome:SGD1:XII:585:4301:-1 gene:YLL067C // ensembl // 11 // --- /// YLL066C // cdna:known chromosome:SGD1:XII:6120:9836:-1 gene:YLL066C // ensembl // 11 // --- /// YLR466W // cdna:known chromosome:SGD1:XII:1067084:1071232:1 gene:YLR466W // ensembl // 11 // --- /// YLR467W // cdna:known chromosome:SGD1:XII:1072505:1077895:1 gene:YLR467W // ensembl // 11 // --- /// YML133C // cdna:known chromosome:SGD1:XIII:461:4684:-1 gene:YML133C // ensembl // 11 // --- /// YNL339C // cdna:known chromosome:SGD1:XIV:371:6098:-1 gene:YNL339C // ensembl // 11 // --- /// YOR396W // cdna:known chromosome:SGD1:XV:1087185:1090859:1 gene:YOR396W // ensembl // 11 // --- /// YPL283C // cdna:known chromosome:SGD1:XVI:280:6007:-1 gene:YPL283C // ensembl // 11 // --- /// YPR204W // cdna:known chromosome:SGD1:XVI:944599:947697:1 gene:YPR204W // ensembl // 11 // --- --- No cerevisiae_gene 1.83148104066222 -2.02527242776116 2.51437206789812 -1.02523903607184 1.22359704038427 Max fold change below threshold 4 2.51437206789812 Max fold change at or above threshold 0.249977188530387 -1.39746530836278 0.169864359659609 0.977623760172789 628.461975097656 209.187544532512 0.332856326749135 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Sc-SRB4-5_at AFFX-r2-Sc-SRB4-5 subunit of RNA polymerase II holoenzyme/mediator complex 2.51400326469035 35.2594776153564 41.2779750823975 SRB4 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from direct assay 42.8642044067383 39.5808181762695 30.9381370544434 39.6917457580566 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=SRB4 SGD:YER022W subunit of RNA polymerase II holoenzymemediator complex (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- S0000824 // SRB4 SGDID:S0000824, Chr V from 198811-200874, Verified ORF // sgd // 11 // --- /// GENSCAN00000016824 // cdna:Genscan chromosome:SGD1:V:198811:200874:1 // ensembl // 11 // --- /// GENEFINDER00000019772 // cdna:GeneFinder chromosome:SGD1:V:198811:200874:1 // ensembl // 11 // --- /// YER022W // cdna:known chromosome:SGD1:V:198811:200874:1 gene:YER022W // ensembl // 11 // --- --- AFFX_control cerevisiae_gene 2.33326379862083 -1.08295397573255 2.51400326469035 -1.3854811080353 -1.07992741533768 Max fold change below threshold 4 2.51400326469035 Max fold change at or above threshold 0.897786497516046 0.256334229279821 -1.43212610407741 0.278005377281542 38.268726348877 5.11867584395163 0.133756106678001 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 No No 3 < x
1771781_at YLR172C.S1 Methyltransferase required for synthesis of diphthamide, which is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); not essential for viability; GFP-Dph5p fusion protein localizes to the cytoplasm 2.5135843906526 1929.52124023438 982.922332763672 DPH5 17183 // peptidyl-diphthamide biosynthesis from peptidyl-histidine // inferred from direct assay /// 17183 // peptidyl-diphthamide biosynthesis from peptidyl-histidine // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4164 // diphthine synthase activity // inferred from direct assay 905.663513183594 1582.58081054688 2276.46166992188 1060.18115234375 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR172C /GEN=DPH5 /DB_XREF=GI:6323201 /SEG=NC_001144:-501262,502164 /DEF=Methyltransferase required for diphthamide biosynthesis, not essential for viability; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm /NOTE=Dph5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: diphthine synthase activity [goid GO:0004164] [evidence IDA] [pmid 3042777]; go_process: peptidyl-diphthamide biosynthesis from peptidyl-histidine [goid GO:0017183] [evidence IDA] [pmid 3042777] --- --- --- --- --- --- S0004162 // DPH5 SGDID:S0004162, Chr XII from 502164-501262, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017953 // cdna:Genscan chromosome:SGD1:XII:501262:502164:-1 // ensembl // 11 // --- /// GENEFINDER00000024716 // cdna:GeneFinder chromosome:SGD1:XII:501262:502050:-1 // ensembl // 11 // --- /// YLR172C // cdna:known chromosome:SGD1:XII:501262:502164:-1 gene:YLR172C // ensembl // 11 // --- --- No cerevisiae_gene 1.35860889499407 1.74742692789265 -1.15152570807691 2.5135843906526 1.17061263583093 Max fold change below threshold 4 2.5135843906526 Max fold change at or above threshold -0.889726089210848 0.204201672650523 1.32554328772108 -0.640018871160755 1456.22178649902 618.795244954268 0.424932006024951 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Sp-TFIID-3_at AFFX-r2-Sp-TFIID-3 --- 2.5128311603435 --- --- --- --- 0.529848873615265 1.33049988746643 0.210857331752777 0.323998957872391 0.696289002895355 0.753906011581421 0.932372987270355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=tfIId transcription initiation factor (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPAC29E6.08 // |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- AFFX_control No -1.24802178811135 2.51109316962054 1.52034026185602 -2.5128311603435 -1.63534128965918 Max fold change below threshold 0 2.5128311603435 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771810_at YLR049C.S1 Hypothetical protein 2.51264475706155 253.823211669922 566.243469238281 --- --- --- --- 496.851806640625 197.740570068359 309.905853271484 635.635131835938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR049C /GEN=RPS0B /DB_XREF=GI:6323078 /SEG=NC_001144:-243887,245173 /DEF=Hypothetical ORF /NOTE=Ylr049cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.Forkhead DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Forkhead DNA-binding domain // 7.69999980926514 --- S0004039 // YLR049C SGDID:S0004039, Chr XII from 245173-243887, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017858 // cdna:Genscan chromosome:SGD1:XII:243887:245158:-1 // ensembl // 11 // --- /// YLR049C // cdna:known chromosome:SGD1:XII:243887:245173:-1 gene:YLR049C // ensembl // 11 // --- --- No cerevisiae_gene 1.31702860540365 -2.51264475706155 -1.19350951987325 -1.60323466432037 1.27932539107319 Max fold change below threshold 4 2.51264475706155 Max fold change at or above threshold 0.446295480727627 -1.09130359214998 -0.514711293450057 1.15971940487241 410.033340454102 194.531358563114 0.474428148568786 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771969_at SPAC19D5.06c.S1 --- 2.51247795143389 --- --- --- --- 3.76168966293335 6.69211673736572 9.45116233825684 5.868332862854 0.567627012729645 0.0561522990465164 0.0561522990465164 0.00415039015933871 A M M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19D5.06c /GEN=din1 /DEF=nuclear exonuclease binding protein (predicted) --- --- --- --- --- --- AB045607 // Schizosaccharomyces pombe din1 mRNA for Dhp1p-interacting protein, complete cds. // gb // 11 // --- /// SPAC19D5.06c // |din1||nuclear exonuclease binding protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.37424271137627 1.7790188285089 1.052394681851 2.51247795143389 1.56002578327472 Max fold change below threshold 4 2.51247795143389 Max fold change at or above threshold AAMAMP No 3 0 AMMP 1 1 2 No No x = 1
1779309_at YOL058W.S1 Arginosuccinate synthetase, catalyzes the formation of L-argininosuccinate from citrulline and L-aspartate in the arginine biosynthesis pathway; potential Cdc28p substrate 2.51223609573379 914.261932373047 948.329620361328 ARG1 52 // citrulline metabolism // non-traceable author statement /// 53 // argininosuccinate metabolism // traceable author statement /// 6526 // arginine biosynthesis // traceable author statement 5829 // cytosol // inferred from direct assay 4055 // argininosuccinate synthase activity // inferred from direct assay 915.168518066406 736.188171386719 1092.33569335938 981.49072265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL058W /GEN=ARG1 /DB_XREF=GI:6324514 /SEG=NC_001147:+219209,220471 /DEF=Arginosuccinate synthetase, catalyzes the formation of L-argininosuccinate from citrulline and L-aspartate in the arginine biosynthesis pathway; potential Cdc28p substrate /NOTE=Arg1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 205532]; go_function: argininosuccinate synthase activity [goid GO:0004055] [evidence IDA] [pmid 2897249]; go_process: arginine biosynthesis [goid GO:0006526] [evidence TAS] [pmid 205532]; go_process: argininosuccinate metabolism [goid GO:0000053] [evidence TAS] [pmid 205532]; go_process: citrulline metabolism [goid GO:0000052] [evidence NAS] [pmid 348678] --- --- --- --- --- --- S0005419 // ARG1 SGDID:S0005419, Chr XV from 219209-220471, Verified ORF // sgd // 11 // --- /// GENSCAN00000017422 // cdna:Genscan chromosome:SGD1:XV:219209:220471:1 // ensembl // 11 // --- /// GENEFINDER00000022720 // cdna:GeneFinder chromosome:SGD1:XV:219209:220471:1 // ensembl // 11 // --- /// YOL058W // cdna:known chromosome:SGD1:XV:219209:220471:1 gene:YOL058W // ensembl // 11 // --- --- No cerevisiae_gene 2.51223609573379 -1.24311766153829 1.09978330840467 1.19358967424633 1.0724699367172 Max fold change below threshold 4 2.51223609573379 Max fold change at or above threshold -0.108092730427288 -1.30770608098005 1.07936786345303 0.336430947954308 931.295776367188 149.198361786501 0.160205130928969 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776161_at YDR358W.S1 Golgi-localized protein with homology to gamma-adaptin, interacts with and regulates Arf1p and Arf2p in a GTP-dependent manner in order to facilitate traffic through the late Golgi 2.51216397299964 1396.30554199219 1398.68225097656 GGA1 6896 // Golgi to vacuole transport // inferred from mutant phenotype /// 6896 // Golgi to vacuole transport // inferred from physical interaction 5802 // Golgi trans face // inferred from direct assay --- 1447.69152832031 1427.275390625 1365.33569335938 1349.67297363281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR358W /GEN=GGA1 /DB_XREF=GI:6320565 /SEG=NC_001136:+1190048,1191721 /DEF=Golgi-localized protein with homology to gamma-adaptin, interacts with and regulates Arf1p and Arf2p in a GTP-dependent manner in order to facilitate traffic through the late Golgi /NOTE=Gga1p; go_component: Golgi trans face [goid GO:0005802] [evidence IDA] [pmid 10747088]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi to vacuole transport [goid GO:0006896] [evidence IMP,IPI] [pmid 10747088] --- --- --- --- --- --- S0002766 // GGA1 SGDID:S0002766, Chr IV from 1190050-1191723, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023588 // cdna:GeneFinder chromosome:SGD1:IV:1190050:1191816:1 // ensembl // 9 // --- /// GENSCAN00000025382 // cdna:Genscan chromosome:SGD1:IV:1190050:1191723:1 // ensembl // 11 // --- /// YDR358W // cdna:known chromosome:SGD1:IV:1190050:1191723:1 gene:YDR358W // ensembl // 11 // --- --- No cerevisiae_gene -2.51216397299964 -1.01430427360369 -1.01533617508437 -1.0603191107956 -1.07262392935355 Max fold change below threshold 4 2.51216397299964 Max fold change at or above threshold 1.06000903969132 0.628887297069181 -0.679075581177625 -1.00982075558288 1397.49389648438 47.3558525977809 0.0338862679235396 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770238_at YDL028C.S1 Dual-specificity kinase required for spindle pole body (SPB) duplication and spindle checkpoint function; substrates include SPB proteins Spc42p, Spc110p, and Spc98p, mitotic exit network protein Mob1p, and checkpoint protein Mad1p 2.51210263503009 231.36270904541 594.910583496094 MPS1 7094 // mitotic spindle checkpoint // traceable author statement /// 7103 // spindle pole body duplication in nuclear envelope // traceable author statement 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 5816 // spindle pole body // inferred from direct assay 4712 // protein threonine/tyrosine kinase activity // inferred from direct assay 550.466674804688 219.125869750977 243.599548339844 639.3544921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL028C /GEN=MPS1 /DB_XREF=GI:6320176 /SEG=NC_001136:-400994,403288 /DEF=Dual-specificity kinase required for spindle pole body (SPB) duplication and spindle checkpoint function; substrates include SPB proteins Spc42p, Spc110p, and Spc98p, mitotic exit network protein Mob1p, and checkpoint protein Mad1p /NOTE=Mps1p; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IDA] [pmid 11827982]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 11827982]; go_function: protein threonine/tyrosine kinase activity [goid GO:0004712] [evidence IDA] [pmid 7737118]; go_process: mitotic spindle checkpoint [goid GO:0007094] [evidence TAS] [pmid 7737118]; go_process: spindle pole body duplication (sensu Saccharomyces) [goid GO:0007103] [evidence TAS] [pmid 9153752] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 8.0E-50 /// hanks // 2.1.8 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DdMLCK // 1.0E-56 --- --- S0002186 // MPS1 SGDID:S0002186, Chr IV from 403288-400994, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025079 // cdna:Genscan chromosome:SGD1:IV:400994:403288:-1 // ensembl // 11 // --- /// YDL028C // cdna:known chromosome:SGD1:IV:400994:403288:-1 gene:YDL028C // ensembl // 11 // --- --- No cerevisiae_gene -1.18473148112814 -2.51210263503009 -1.13692481986197 -2.25971960357142 1.16147720007637 Max fold change below threshold 4 2.51210263503009 Max fold change at or above threshold 0.644008790862645 -0.909813002550629 -0.795043754162374 1.06084796585036 413.136646270752 213.242475075508 0.51615482915974 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772961_at SPBC14C8.02.S1 --- 2.51160895956698 --- --- --- --- 7.30420255661011 11.5559034347534 9.3435230255127 3.77529716491699 0.0805663987994194 0.00805663969367743 0.000732421991415322 0.149657994508743 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14C8.02 /GEN=tim44 /DEF=TIM23 translocase complex --- --- --- --- --- --- SPBC14C8.02 // |tim44||TIM23 translocase complex|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.19009861781772 1.58208967306029 -2.51160895956698 1.27919823596035 -1.93473579364466 Max fold change below threshold 4 2.51160895956698 Max fold change at or above threshold APPAPA No 3 0 APPA 2 2 0 No No 1 < x = 2
1773966_at YNL093W.S1 GTPase, similar to Ypt51p and Ypt52p and to mammalian rab5; required for vacuolar protein sorting and endocytosis 2.51155321763689 1287.08209228516 679.605499267578 YPT53 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6897 // endocytosis // inferred from mutant phenotype 5770 // late endosome // inferred from mutant phenotype 3924 // GTPase activity // inferred from mutant phenotype /// 3924 // GTPase activity // inferred from sequence similarity 629.157958984375 994.157104492188 1580.00708007813 730.053039550781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL093W /GEN=YPT53 /DB_XREF=GI:6324236 /SEG=NC_001146:+449868,450530 /DEF=Involved in vacuolar protein sorting and endocytosis /NOTE=Ypt53p; go_component: late endosome [goid GO:0005770] [evidence IMP] [pmid 11872141]; go_function: GTPase activity [goid GO:0003924] [evidence IMP,ISS] [pmid 8163546]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 8163546]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 8163546] --- --- --- --- --- --- S0005037 // YPT53 SGDID:S0005037, Chr XIV from 449868-450530, Verified ORF // sgd // 11 // --- /// GENSCAN00000019959 // cdna:Genscan chromosome:SGD1:XIV:449868:450530:1 // ensembl // 11 // --- /// GENEFINDER00000020692 // cdna:GeneFinder chromosome:SGD1:XIV:449868:450530:1 // ensembl // 11 // --- /// YNL093W // cdna:known chromosome:SGD1:XIV:449868:450530:1 gene:YNL093W // ensembl // 11 // --- --- No cerevisiae_gene -1.5583725422536 1.58013912133769 2.51155321763689 2.51130428776371 1.16036526141905 Max fold change below threshold 4 2.51155321763689 Max fold change at or above threshold -0.830431419539332 0.0253531066858253 1.39894904510454 -0.59387073225103 983.343795776367 426.508232297462 0.433732570571339 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774584_at YHR202W.S1 Hypothetical protein 2.51141534529491 500.269088745117 1116.24627685547 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5625 // soluble fraction // inferred from direct assay --- 1101.55139160156 438.617767333984 561.92041015625 1130.94116210938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR202W /GEN=PPX1 /DB_XREF=GI:6321996 /SEG=NC_001140:+502386,504194 /DEF=Hypothetical ORF /NOTE=Yhr202wp; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 11935221]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001245 // YHR202W SGDID:S0001245, Chr VIII from 502387-504195, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016724 // cdna:Genscan chromosome:SGD1:VIII:502387:504195:1 // ensembl // 11 // --- /// GENEFINDER00000020292 // cdna:GeneFinder chromosome:SGD1:VIII:503302:504195:1 // ensembl // 11 // --- /// YHR202W // cdna:known chromosome:SGD1:VIII:502387:504195:1 gene:YHR202W // ensembl // 11 // --- --- No cerevisiae_gene -1.9400702723586 -2.51141534529491 1.26904836917128 -1.96033347728953 1.02668034440507 Max fold change below threshold 4 2.51141534529491 Max fold change at or above threshold 0.81611069829089 -1.02854947267825 -0.685451060011734 0.897889834399097 808.257682800293 359.37981136075 0.444635193711541 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775152_at YMR247W-A.S1 Identified by expression profiling and mass spectrometry 2.51137378003377 10.524073600769 12.386355638504 --- --- --- --- 7.05499124526978 13.9900503158569 7.05809688568115 17.7177200317383 0.014160200022161 0.030273400247097 0.0461426004767418 0.014160200022161 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR247W-A /GEN=FAA4 /DB_XREF=GI:33438860 /SEG=NC_001145:+769282,769425 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Ymr247w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028849 // YMR247W-A SGDID:S0028849, Chr XIII from 769282-769425, Uncharacterized ORF // sgd // 11 // --- /// YMR247W-A // cdna:known chromosome:SGD1:XIII:769282:769425:1 gene:YMR247W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.76390036111927 1.98300037937495 2.0493514567275 1.00044020471513 2.51137378003377 Max fold change below threshold 4 2.51137378003377 Max fold change at or above threshold -0.829881416345542 0.478069602110905 -0.829295693066522 1.18110750730116 11.4552146196365 5.30223148476266 0.462866184599769 PPPPPP Called_P_>2EXP 4 0 PPPP 0 4 0 Yes Yes 3 < x
1778816_at YOR375C.S1 NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh3p; expression regulated by nitrogen and carbon sources 2.5112129867063 3078.45397949219 1381.18792724609 GDH1 6537 // glutamate biosynthesis // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4354 // glutamate dehydrogenase (NADP+) activity // inferred from direct assay 1336.77111816406 2799.99096679688 3356.9169921875 1425.60473632813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR375C /GEN=GDH1 /DB_XREF=GI:6324951 /SEG=NC_001147:-1041674,1043038 /DEF=NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh3p; expression regulated by nitrogen and carbon sources /NOTE=Gdh1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 4126]; go_function: glutamate dehydrogenase (NADP+) activity [goid GO:0004354] [evidence IDA] [pmid 2989290]; go_process: glutamate biosynthesis [goid GO:0006537] [evidence IGI] [pmid 2989290] --- --- --- --- --- --- S0005902 // GDH1 SGDID:S0005902, Chr XV from 1043038-1041674, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017823 // cdna:Genscan chromosome:SGD1:XV:1041674:1043038:-1 // ensembl // 11 // --- /// GENEFINDER00000022839 // cdna:GeneFinder chromosome:SGD1:XV:1041674:1043038:-1 // ensembl // 11 // --- /// YOR375C // cdna:known chromosome:SGD1:XV:1041674:1043038:-1 gene:YOR375C // ensembl // 11 // --- --- No cerevisiae_gene 1.93777019073168 2.09459265595326 1.13706313923813 2.5112129867063 1.06645387303555 Max fold change below threshold 4 2.5112129867063 Max fold change at or above threshold -0.887192838158107 0.566430598276114 1.11970406816815 -0.798941828286155 2229.82095336914 1006.60171813281 0.451427150064176 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778147_at YJL062W.S1 Integral plasma membrane protein involved in the synthesis of the glycosylphosphatidylinositol (GPI) core structure; mutations affect cell wall integrity 2.51112968027464 305.010940551758 742.072357177734 LAS21 6506 // GPI anchor biosynthesis // inferred from mutant phenotype 5887 // integral to plasma membrane // inferred from direct assay /// 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay 16740 // transferase activity // inferred from mutant phenotype 702.494812011719 279.752502441406 330.269378662109 781.64990234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL062W /GEN=LAS21 /DB_XREF=GI:6322399 /SEG=NC_001142:+317200,319692 /DEF=Local Anesthetics Sensitive: involved in the attachment of glycosylphosphatidylinositol (GPI) anchors to proteins. /NOTE=Las21p; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA] [pmid 10329735]; go_component: integral to plasma membrane [goid GO:0005887] [evidence IDA] [pmid 10329735]; go_function: transferase activity [goid GO:0016740] [evidence IMP] [pmid 10329735]; go_process: GPI anchor biosynthesis [goid GO:0006506] [evidence IMP] [pmid 10329735] --- --- --- --- --- S0003598 // span:7-26,404-426,438-460,465-487,537-559,599-621,724-746,771-793,806-828 // numtm:9 S0003598 // LAS21 SGDID:S0003598, Chr X from 317200-319692, Verified ORF // sgd // 11 // --- /// GENSCAN00000024092 // cdna:Genscan chromosome:SGD1:X:317200:319692:1 // ensembl // 11 // --- /// GENEFINDER00000024468 // cdna:GeneFinder chromosome:SGD1:X:317200:319692:1 // ensembl // 11 // --- /// YJL062W // cdna:known chromosome:SGD1:X:317200:319692:1 gene:YJL062W // ensembl // 11 // --- --- No cerevisiae_gene -1.38978520088125 -2.51112968027464 -1.04358926140809 -2.12703586041631 1.1126771172948 Max fold change below threshold 4 2.51112968027464 Max fold change at or above threshold 0.701136875639675 -0.955163672059492 -0.757239007652356 1.01126580407217 523.541648864746 255.232850195914 0.487512026501358 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775358_at YEL069C.S1 Protein of unknown function with similarity to hexose transporter family members, expression is repressed by high levels of glucose /// Protein of unknown function with similarity to hexose transporter family members, expression is induced by low levels of glucose and repressed by high levels of glucose 2.51039078471458 29.296257019043 13.4197888374329 HXT17 /// HXT13 8645 // hexose transport // inferred from genetic interaction 5886 // plasma membrane // inferred from sequence similarity 5353 // fructose transporter activity // inferred from genetic interaction /// 5355 // glucose transporter activity // inferred from genetic interaction /// 15578 // mannose transporter activity // inferred from genetic interaction 13.5842895507813 27.8096504211426 30.7828636169434 13.2552881240845 0.129638999700546 0.0107421996071935 0.0805663987994194 0.018554700538516 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL069C /GEN=HXT13 /DB_XREF=GI:6320766 /SEG=NC_001137:-21537,23231 /DEF=Protein of unknown function with similarity to hexose transporter family members, expression is induced by low levels of glucose and repressed by high levels of glucose /NOTE=Hxt13p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 8929273]; go_function: fructose transporter activity [goid GO:0005353] [evidence IGI] [pmid 10618490]; go_function: glucose transporter activity [goid GO:0005355] [evidence IGI] [pmid 10618490]; go_function: mannose transporter activity [goid GO:0015578] [evidence IGI] [pmid 10618490]; go_process: hexose transport [goid GO:0008645] [evidence IGI] [pmid 10618490] --- --- --- --- --- S0000795 // span:51-73,108-130,137-154,169-188,195-217,227-249,318-340,355-374,383-402,422-444,457-479,483-505 // numtm:12 /// S0005355 // span:51-73,108-130,137-154,169-188,195-217,227-249,318-340,355-374,383-402,422-444,457-479,483-505 // numtm:12 S0000795 // HXT13 SGDID:S0000795, Chr V from 23231-21537, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016749 // cdna:Genscan chromosome:SGD1:V:21537:22982:-1 // ensembl // 11 // --- /// GENEFINDER00000019605 // cdna:GeneFinder chromosome:SGD1:V:21537:22982:-1 // ensembl // 11 // --- /// YEL069C // cdna:known chromosome:SGD1:V:21537:23231:-1 gene:YEL069C // ensembl // 11 // --- --- No cerevisiae_gene -1.00782941072712 2.0471921124166 2.51039078471458 2.26606356569991 -1.0248203904447 Max fold change below threshold 4 2.51039078471458 Max fold change at or above threshold -0.840651134400604 0.697678670890416 1.01920179555957 -0.876229332049383 21.3580229282379 9.24727637820824 0.432964999114324 AAPPAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1776399_at YNL218W.S1 Protein with DNA-dependent ATPase and ssDNA annealing activities involved in maintenance of genome; interacts functionally with DNA polymerase delta; homolog of human Werner helicase interacting protein (WHIP) 2.51021428611686 125.189289093018 266.544616699219 MGS1 6260 // DNA replication // inferred from mutant phenotype /// 6260 // DNA replication // inferred from genetic interaction /// 6275 // regulation of DNA replication // inferred from genetic interaction /// 6275 // regulation of DNA replication // inferred from sequence similarity 5634 // nucleus // inferred from curator 4386 // helicase activity // inferred from sequence similarity /// 16887 // ATPase activity // inferred from direct assay 241.260009765625 96.1113204956055 154.26725769043 291.829223632813 0.00292969006113708 0.00292969006113708 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL218W /GEN=MGS1 /DB_XREF=GI:6324111 /SEG=NC_001146:+238237,240000 /DEF=Maintenance of Genome Stability 1 /NOTE=Mgs1p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 12436259]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 11459965]; go_function: helicase activity [goid GO:0004386] [evidence ISS] [pmid 10077188]; go_process: DNA replication [goid GO:0006260] [evidence IGI,IMP] [pmid 11459965]; go_process: regulation of DNA replication [goid GO:0006275] [evidence IGI,ISS] [pmid 12436259] --- --- --- --- --- --- S0005162 // MGS1 SGDID:S0005162, Chr XIV from 238237-240000, Verified ORF // sgd // 11 // --- /// GENSCAN00000019866 // cdna:Genscan chromosome:SGD1:XIV:238237:240000:1 // ensembl // 11 // --- /// GENEFINDER00000020570 // cdna:GeneFinder chromosome:SGD1:XIV:238237:240000:1 // ensembl // 11 // --- /// YNL218W // cdna:known chromosome:SGD1:XIV:238237:240000:1 gene:YNL218W // ensembl // 11 // --- --- No cerevisiae_gene -1.46605545231936 -2.51021428611686 -1.08373836167538 -1.56390936986619 1.20960462497002 Max fold change below threshold 4 2.51021428611686 Max fold change at or above threshold 0.518978273169906 -1.14050494530514 -0.475608814896655 1.09713548703189 195.866952896118 87.4661989070317 0.446559246538241 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775347_at YLR209C.S1 Purine nucleoside phosphorylase, specifically metabolizes inosine and guanosine nucleosides 2.51002299574764 1171.5993347168 580.751678466797 PNP1 6152 // purine nucleoside catabolism // inferred from mutant phenotype --- 4731 // purine-nucleoside phosphorylase activity // inferred from mutant phenotype /// 4731 // purine-nucleoside phosphorylase activity // inferred from direct assay /// 4731 // purine-nucleoside phosphorylase activity // inferred from sequence similarity 545.595947265625 973.740295410156 1369.45837402344 615.907409667969 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR209C /GEN=PNP1 /DB_XREF=GI:6323238 /SEG=NC_001144:-560799,561734 /DEF=purine nucleoside phosphorylase, specifically metabolizes inosine and guanosine nucleosides /NOTE=Pnp1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: purine-nucleoside phosphorylase activity [goid GO:0004731] [evidence IDA,IMP,ISS] [pmid 11466296]; go_process: purine nucleoside catabolism [goid GO:0006152] [evidence IMP] [pmid 11466296] --- --- --- --- --- --- S0004199 // PNP1 SGDID:S0004199, Chr XII from 561734-560799, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017981 // cdna:Genscan chromosome:SGD1:XII:560799:561734:-1 // ensembl // 11 // --- /// GENEFINDER00000024728 // cdna:GeneFinder chromosome:SGD1:XII:560799:561734:-1 // ensembl // 11 // --- /// YLR209C // cdna:known chromosome:SGD1:XII:560799:561734:-1 gene:YLR209C // ensembl // 11 // --- --- No cerevisiae_gene 1.62044543018247 1.78472787470338 1.60979529802068 2.51002299574764 1.12887093966648 Max fold change below threshold 4 2.51002299574764 Max fold change at or above threshold -0.873310049651771 0.257742223206117 1.30313225151362 -0.687564425067964 876.175506591797 378.53630501331 0.432032511940176 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773718_at YOR007C.S1 Glutamine-rich cytoplasmic protein of unknown function, contains tetratricopeptide (TPR) repeats, which often mediate protein-protein interactions; conserved in human and C. elegans 2.50994530356725 3108.99694824219 1343.24798583984 SGT2 --- 5737 // cytoplasm // inferred from direct assay --- 1282.31286621094 3218.53515625 2999.45874023438 1404.18310546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR007C /GEN=SGT2 /DB_XREF=GI:6324580 /SEG=NC_001147:-338938,339978 /DEF=Glutamine-rich cytoplasmic protein of unknown function, contains tetratricopeptide (TPR) repeats, which often mediate protein-protein interactions; conserved in human and C. elegans /NOTE=Sgt2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005533 // SGT2 SGDID:S0005533, Chr XV from 339978-338938, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017472 // cdna:Genscan chromosome:SGD1:XV:338938:339978:-1 // ensembl // 11 // --- /// GENEFINDER00000022758 // cdna:GeneFinder chromosome:SGD1:XV:338938:339978:-1 // ensembl // 11 // --- /// YOR007C // cdna:known chromosome:SGD1:XV:338938:339978:-1 gene:YOR007C // ensembl // 11 // --- --- No cerevisiae_gene 1.19875099800499 2.50994530356725 1.04712163794764 2.33910055749294 1.09503939519684 Max fold change below threshold 4 2.50994530356725 Max fold change at or above threshold -0.921167266758301 0.968604349448107 0.754783655978969 -0.802220738668775 2226.12246704102 1024.58004630523 0.460253225720824 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773379_at YLL032C.S1 Hypothetical protein 2.50981294950052 81.8158397674561 169.920547485352 --- --- 5737 // cytoplasm // inferred from direct assay --- 157.703491210938 62.8347587585449 100.796920776367 182.137603759766 0.000244141003349796 0.000244141003349796 0.000244140625 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL032C /GEN=RIX7 /DB_XREF=GI:6322996 /SEG=NC_001144:-74269,76746 /DEF=Hypothetical ORF /NOTE=Yll032cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003955 // YLL032C SGDID:S0003955, Chr XII from 76746-74269, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017690 // cdna:Genscan chromosome:SGD1:XII:74269:76527:-1 // ensembl // 11 // --- /// GENEFINDER00000024773 // cdna:GeneFinder chromosome:SGD1:XII:74269:75714:-1 // ensembl // 11 // --- /// YLL032C // cdna:known chromosome:SGD1:XII:74269:76746:-1 gene:YLL032C // ensembl // 11 // --- --- No cerevisiae_gene -1.10796500439584 -2.50981294950052 1.10394488535165 -1.56456655616322 1.15493704268186 Max fold change below threshold 4 2.50981294950052 Max fold change at or above threshold 0.588416455343735 -1.16505618377209 -0.463395998174717 1.04003572660307 125.868193626404 54.1033434660431 0.429841264161065 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771041_at YOR152C.S1 Hypothetical protein 2.50948606190716 1324.54113769531 624.829772949219 --- --- 5624 // membrane fraction // inferred from direct assay --- 594.882995605469 1492.8505859375 1156.23168945313 654.776550292969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR152C /GEN=RPB2 /DB_XREF=GI:6324726 /SEG=NC_001147:-617518,618288 /DEF=Hypothetical ORF /NOTE=Yor152cp; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 11935221]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005678 // span:5-27,69-91 // numtm:2 S0005678 // YOR152C SGDID:S0005678, Chr XV from 618288-617518, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YOR152C // cdna:known chromosome:SGD1:XV:617518:618288:-1 gene:YOR152C // ensembl // 11 // --- GENSCAN00000017576 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene -1.10626223347413 2.50948606190716 1.27875026304144 1.94362874379409 1.10068123501587 Max fold change below threshold 4 2.50948606190716 Max fold change at or above threshold -0.888607535606918 1.2123287460981 0.42475594241815 -0.748477152909336 974.685455322266 427.413053004769 0.438513830970681 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779372_at YNL188W.S1 Essential protein involved in karyogamy during mating and in spindle pole body duplication during mitosis, localizes to the half-bridge of the spindle pole body, interacts with Spc72p during karyogamy, also interacts with Cdc31p 2.50943330583714 47.8264560699463 117.349891662598 KAR1 742 // karyogamy during conjugation with cellular fusion // inferred from genetic interaction /// 742 // karyogamy during conjugation with cellular fusion // inferred from mutant phenotype /// 7103 // spindle pole body duplication in nuclear envelope // inferred from mutant phenotype 5825 // half bridge of spindle pole body // inferred from direct assay 5515 // protein binding // inferred from direct assay 110.060989379883 51.7940101623535 43.8589019775391 124.638793945313 0.00195312988944352 0.00805663969367743 0.00805663969367743 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL188W /GEN=KAR1 /DB_XREF=GI:6324141 /SEG=NC_001146:+286307,287608 /DEF=Essential protein involved in karyogamy during mating and in spindle pole body duplication during mitosis, localizes to the half-bridge of the spindle pole body, interacts with Spc72p during karyogamy, also interacts with Cdc31p /NOTE=Kar1p; go_component: half bridge of spindle pole body [goid GO:0005825] [evidence IDA] [pmid 10428957]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 10428957]; go_process: karyogamy during conjugation with cellular fusion [goid GO:0000742] [evidence IGI,IMP] [pmid 1607389]; go_process: spindle pole body duplication (sensu Saccharomyces) [goid GO:0007103] [evidence IMP] [pmid 3030557] --- --- --- --- --- S0005132 // span:412-431 // numtm:1 S0005132 // KAR1 SGDID:S0005132, Chr XIV from 286307-287608, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020493 // cdna:GeneFinder chromosome:SGD1:XIV:286307:287608:1 // ensembl // 11 // --- /// GENSCAN00000019890 // cdna:Genscan chromosome:SGD1:XIV:286466:287608:1 // ensembl // 11 // --- /// YNL188W // cdna:known chromosome:SGD1:XIV:286307:287608:1 gene:YNL188W // ensembl // 11 // --- --- No cerevisiae_gene -1.28186740386182 -2.12497524394975 1.13251500043602 -2.50943330583714 1.13245205815035 Max fold change below threshold 4 2.50943330583714 Max fold change at or above threshold 0.674887081064336 -0.756478099074284 -0.951409048111014 1.03300006612096 82.588173866272 40.7072772385636 0.492894749125673 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1774601_at YLR057W.S1 Hypothetical protein 2.50906097624183 119.677436828613 312.448532104492 --- --- --- --- 290.667053222656 123.507926940918 115.846946716309 334.230010986328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR057W /GEN=ERG3 /DB_XREF=GI:6323086 /SEG=NC_001144:+255307,257856 /DEF=Hypothetical ORF /NOTE=Ylr057wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004047 // span:13-32 // numtm:1 S0004047 // YLR057W SGDID:S0004047, Chr XII from 255307-257856, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017864 // cdna:Genscan chromosome:SGD1:XII:255307:257856:1 // ensembl // 11 // --- /// YLR057W // cdna:known chromosome:SGD1:XII:255307:257856:1 gene:YLR057W // ensembl // 11 // --- --- No cerevisiae_gene -1.1550887887269 -2.35342832174409 -1.19641156095039 -2.50906097624183 1.14987236179913 Max fold change below threshold 4 2.50906097624183 Max fold change at or above threshold 0.661666313606858 -0.820874313422044 -0.888819837417579 1.04802783723276 216.062984466553 112.751801356523 0.521846912532941 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776933_at YPL202C.S1 Iron-regulated transcriptional activator, required for iron homeostasis and resistance to oxidative stress; similar to Aft1p 2.50881507159609 164.046943664551 374.153579711914 AFT2 6367 // transcription initiation from RNA polymerase II promoter // inferred from sequence similarity /// 6367 // transcription initiation from RNA polymerase II promoter // inferred from mutant phenotype /// 6879 // iron ion homeostasis // inferred from sequence similarity /// 6879 // iron ion homeostasis // inferred from mutant phenotype /// 6979 // response to oxidative stress // inferred from sequence similarity /// 6979 // response to oxidative stress // inferred from mutant phenotype /// 45941 // positive regulation of transcription // inferred from direct assay 5634 // nucleus // inferred from sequence similarity /// 5634 // nucleus // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from direct assay 3700 // transcription factor activity // inferred from direct assay /// 3704 // specific RNA polymerase II transcription factor activity // inferred from sequence similarity /// 3704 // specific RNA polymerase II transcription factor activity // inferred from mutant phenotype 370.706329345703 147.761520385742 180.332366943359 377.600830078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL202C /GEN=AFT2 /DB_XREF=GI:6325054 /SEG=NC_001148:-168087,169337 /DEF=Activator of Iron (Fe) Transcription /NOTE=Aft2p; go_component: nucleus [goid GO:0005634] [evidence IMP,ISS] [pmid 11448968]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IMP,ISS] [pmid 11448968]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IMP,ISS] [pmid 11448968]; go_process: response to oxidative stress [goid GO:0006979] [evidence IMP,ISS] [pmid 11448968]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence IMP,ISS] [pmid 11448968] --- --- --- --- --- --- S0006123 // AFT2 SGDID:S0006123, Chr XVI from 169337-168087, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017033 // cdna:Genscan chromosome:SGD1:XVI:168087:168644:-1 // ensembl // 11 // --- /// GENEFINDER00000020958 // cdna:GeneFinder chromosome:SGD1:XVI:168087:169337:-1 // ensembl // 11 // --- /// YPL202C // cdna:known chromosome:SGD1:XVI:168087:169337:-1 gene:YPL202C // ensembl // 11 // --- --- No cerevisiae_gene -1.40077547529401 -2.50881507159609 1.30209408588983 -2.05568382220668 1.01859828167647 Max fold change below threshold 4 2.50881507159609 Max fold change at or above threshold 0.832398691364461 -0.994056868852532 -0.727223099213974 0.888881276702044 269.100261688232 122.064184760933 0.453601137342451 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769608_at YGL107C.S1 Mitochondrial protein required for sporulation 2.5085135215165 568.452301025391 1324.81610107422 RMD9 --- 5739 // mitochondrion // inferred from direct assay --- 1313.33850097656 613.352111816406 523.552490234375 1336.29370117188 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL107C /GEN=RMD9 /DB_XREF=GI:6321331 /SEG=NC_001139:-304334,306274 /DEF=Mitochondrial protein required for sporulation /NOTE=Rmd9p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003075 // RMD9 SGDID:S0003075, Chr VII from 306276-304336, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019271 // cdna:Genscan chromosome:SGD1:VII:304336:306276:-1 // ensembl // 11 // --- /// GENEFINDER00000021708 // cdna:GeneFinder chromosome:SGD1:VII:304336:305904:-1 // ensembl // 11 // --- /// YGL107C // cdna:known chromosome:SGD1:VII:304336:306276:-1 gene:YGL107C // ensembl // 11 // --- --- No cerevisiae_gene -1.13738159707066 -2.14124721456846 -1.10985672884237 -2.5085135215165 1.01747851005529 Max fold change below threshold 4 2.5085135215165 Max fold change at or above threshold 0.83660711761769 -0.760356963588498 -0.965227761639973 0.888977607610781 946.634201049805 438.323189230065 0.463033332985402 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772741_at YDR448W.S1 Transcription coactivator, component of the ADA and SAGA transcriptional adaptor/HAT (histone acetyltransferase) complexes 2.50774461002361 540.845413208008 740.839294433594 ADA2 16568 // chromatin modification // traceable author statement /// 16573 // histone acetylation // traceable author statement 124 // SAGA complex // inferred from direct assay /// 5671 // Ada2/Gcn5/Ada3 transcription activator complex // inferred from physical interaction /// 46695 // SLIK (SAGA-like) complex // inferred from physical interaction 3713 // transcription coactivator activity // traceable author statement 685.728454589844 460.600250244141 621.090576171875 795.950134277344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR448W /GEN=ADA2 /DB_XREF=GI:6320656 /SEG=NC_001136:+1356053,1357357 /DEF=transcription factor, member of ADA and SAGA, two transcriptional adaptor/HAT (histone acetyltransferase)complexes /NOTE=Ada2p; go_component: Ada2/Gcn5/Ada3 transcription activator complex [goid GO:0005671] [evidence IPI] [pmid 10490601]; go_component: SAGA complex [goid GO:0000124] [evidence IDA] [pmid 9674426]; go_function: transcription coactivator activity [goid GO:0003713] [evidence TAS] [pmid 11857084]; go_process: chromatin modification [goid GO:0016568] [evidence TAS] [pmid 10839822]; go_process: histone acetylation [goid GO:0016573] [evidence TAS] [pmid 10839822] --- --- --- --- scop // a.4.1.Myb // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb // 0.0719999969005585 --- S0002856 // ADA2 SGDID:S0002856, Chr IV from 1356055-1357359, Verified ORF // sgd // 11 // --- /// GENSCAN00000025450 // cdna:Genscan chromosome:SGD1:IV:1356055:1357359:1 // ensembl // 11 // --- /// YDR448W // cdna:known chromosome:SGD1:IV:1356055:1357359:1 gene:YDR448W // ensembl // 11 // --- --- No cerevisiae_gene 2.50774461002361 -1.48877134614316 -1.02020361802148 -1.10407158134063 1.1607366282524 Max fold change below threshold 4 2.50774461002361 Max fold change at or above threshold 0.320205387652978 -1.28579875859828 -0.140903876936258 1.10649724788156 640.842353820801 140.179092856764 0.218741929307567 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772809_at YIL030C.S1 Ubiquitin-protein ligase of the ER/nuclear envelope, required for degradation of Alpha2p and other proteins containing a Deg1 degradation signal; ssm4 mutation suppresses mRNA instability caused by an rna14 mutation 2.50746389639437 891.507171630859 2063.17004394531 SSM4 30433 // ER-associated protein catabolism // inferred from mutant phenotype 5635 // nuclear membrane // traceable author statement /// 5635 // nuclear membrane // inferred from direct assay /// 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay 4842 // ubiquitin-protein ligase activity // inferred from direct assay 2076.86987304688 828.275085449219 954.7392578125 2049.47021484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL030C /GEN=SSM4 /DB_XREF=GI:6322159 /SEG=NC_001141:-296049,300008 /DEF=Protein involved in mRNA turnover /NOTE=Ssm4p; go_component: nuclear membrane [goid GO:0005635] [evidence TAS] [pmid 8917313]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence IDA] [pmid 11641273]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IGI] [pmid 8524265] --- --- --- --- --- S0001292 // span:130-152,201-218,469-491,495-517,626-648,668-690,735-757,965-987,989-1008,1023-1040,1112-1134,1171-1193,1215-1234,1269-1291 // numtm:14 S0001292 // SSM4 SGDID:S0001292, Chr IX from 300008-296049, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016454 // cdna:Genscan chromosome:SGD1:IX:296049:300008:-1 // ensembl // 11 // --- /// GENEFINDER00000019059 // cdna:GeneFinder chromosome:SGD1:IX:296049:300008:-1 // ensembl // 11 // --- /// YIL030C // cdna:known chromosome:SGD1:IX:296049:300008:-1 gene:YIL030C // ensembl // 11 // --- --- No cerevisiae_gene -1.43846511351457 -2.50746389639437 -1.28518563701553 -2.17532677749672 -1.01336914193955 Max fold change below threshold 4 2.50746389639437 Max fold change at or above threshold 0.883587468242339 -0.956587967408672 -0.77020543098899 0.843205930155323 1477.33860778809 678.519429945511 0.459284977979023 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779012_at YNL275W.S1 Plasma membrane protein that binds HCO3-, I-, Br-, NO3- and Cl- ; putative boron efflux transporter with similarity to A. thaliana BOR1 which is a known boron efflux transporter 2.50728316574948 532.028121948242 1035.97546386719 --- 6810 // transport // inferred from sequence similarity /// 46713 // boron transport // inferred from mutant phenotype /// 46713 // boron transport // inferred from sequence similarity 5624 // membrane fraction // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 8509 // anion transporter activity // inferred from physical interaction /// 8509 // anion transporter activity // inferred from sequence similarity /// 46714 // boron binding // inferred from direct assay /// 46715 // boron transporter activity // inferred from mutant phenotype /// 46715 // boron transporter activity // inferred from sequence similarity 1002.22607421875 506.989288330078 557.066955566406 1069.72485351563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL275W /GEN=MET2 /DB_XREF=GI:6324054 /SEG=NC_001146:+119266,120996 /DEF=transporter /NOTE=Ynl275wp; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 11401825]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 11401825]; go_function: anion transporter activity [goid GO:0008509] [evidence ISS,IPI] [pmid 11401825]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 11401825] --- --- --- --- --- S0005219 // span:129-151,166-185,192-214,234-256,269-291,330-352,372-394,452-474,495-512,517-539 // numtm:10 S0005219 // YNL275W SGDID:S0005219, Chr XIV from 119266-120996, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019821 // cdna:Genscan chromosome:SGD1:XIV:119266:120996:1 // ensembl // 11 // --- /// GENEFINDER00000020695 // cdna:GeneFinder chromosome:SGD1:XIV:119266:120996:1 // ensembl // 11 // --- /// YNL275W // cdna:known chromosome:SGD1:XIV:119266:120996:1 gene:YNL275W // ensembl // 11 // --- --- No cerevisiae_gene -2.50728316574948 -1.97681903205467 1.53637227967625 -1.79911241225881 1.06734885574544 Max fold change below threshold 4 2.50728316574948 Max fold change at or above threshold 0.744868182492932 -0.945530898637562 -0.774600052841149 0.975262768985779 784.001792907715 292.970335476916 0.373685797822406 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771172_at YLR328W.S1 Nicotinic acid mononucleotide adenylyltransferase, involved in NAD(+) salvage pathway 2.50662546779017 2785.75512695313 1188.24554443359 NMA1 19674 // NAD metabolism // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 309 // nicotinamide-nucleotide adenylyltransferase activity // inferred from direct assay 1144.72680664063 2702.10888671875 2869.4013671875 1231.76428222656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR328W /GEN=NMA1 /DB_XREF=GI:6323360 /SEG=NC_001144:+784913,786118 /DEF=NAD(+) salvage pathway /NOTE=Nma1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: nicotinamide-nucleotide adenylyltransferase activity [goid GO:0000309] [evidence IDA] [pmid 10428462]; go_process: NAD metabolism [goid GO:0019674] [evidence TAS] [pmid 11884393] --- --- --- --- --- --- S0004320 // NMA1 SGDID:S0004320, Chr XII from 784913-786118, Verified ORF // sgd // 11 // --- /// GENSCAN00000018070 // cdna:Genscan chromosome:SGD1:XII:784913:786118:1 // ensembl // 11 // --- /// GENEFINDER00000024618 // cdna:GeneFinder chromosome:SGD1:XII:784913:786118:1 // ensembl // 11 // --- /// YLR328W // cdna:known chromosome:SGD1:XII:784913:786118:1 gene:YLR328W // ensembl // 11 // --- --- No cerevisiae_gene 1.25923738286184 2.36048362897039 1.28862741242377 2.50662546779017 1.07603340384887 Max fold change below threshold 4 2.50662546779017 Max fold change at or above threshold -0.910044427503391 0.772647518262367 0.953400663603438 -0.816003754362414 1987.00033569336 925.530120945218 0.465792634414556 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775158_at YDL241W.S1 Hypothetical protein 2.50511882251482 12.9770264625549 6.15186882019043 --- --- --- --- 6.92304182052612 17.3430423736572 8.61101055145264 5.38069581985474 0.125732421875 0.0676269978284836 0.171387001872063 0.030273400247097 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL241W /GEN=AAD4 /DB_XREF=GI:6319960 /SEG=NC_001136:+20635,21006 /DEF=Hypothetical ORF /NOTE=Ydl241wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002400 // YDL241W SGDID:S0002400, Chr IV from 20635-21006, Uncharacterized ORF // sgd // 11 // --- /// YDL241W // cdna:known chromosome:SGD1:IV:20635:21006:1 gene:YDL241W // ensembl // 11 // --- --- No cerevisiae_gene 2.19650021685869 2.50511882251482 -1.17557185834682 1.24381894183014 -1.2866443397488 Max fold change below threshold 4 2.50511882251482 Max fold change at or above threshold -0.493637701410504 1.45369847887219 -0.178182576033246 -0.781878201428444 9.56444764137268 5.35089968472645 0.559457261450228 APAAAP No 4 0 AAAP 3 1 0 No No x = 1
1778867_at YKL018W.S1 Subunit of the COMPASS (Set1C) complex, which methylates ubiquitinated histone H3 on lys 4 and is involved in telomeric silencing; subunit of CPF (cleavage and polyadenylation factor), a complex involved in RNAP II transcription termination 2.50492409900741 327.16162109375 758.582275390625 SWD2 16571 // histone methylation // inferred from direct assay /// 30846 // transcription termination from Pol II promoter, RNA polymerase(A) coupled // inferred from physical interaction /// 30847 // transcription termination from Pol II promoter, RNA polymerase(A)-independent // inferred from physical interaction 5847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from physical interaction /// 48188 // COMPASS complex // inferred from physical interaction 42800 // histone lysine N-methyltransferase activity (H3-K4 specific) // inferred from direct assay 751.882995605469 300.161987304688 354.161254882813 765.281555175781 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL018W /GEN=SWD2 /DB_XREF=GI:6322834 /SEG=NC_001143:+403745,404734 /DEF=Subunit of the COMPASS complex, which methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres /NOTE=Swd2p; go_component: COMPASS complex [goid GO:0048188] [evidence IPI] [pmid 11805083]; go_component: mRNA cleavage and polyadenylation specificity factor complex [goid GO:0005847] [evidence IPI] [pmid 12819204]; go_function: histone lysine N-methyltransferase activity (H3-K4 specific) [goid GO:0042800] [evidence IDA] [pmid 11742990]; go_process: histone methylation [goid GO:0016571] [evidence IDA] [pmid 11742990]; go_process: transcription termination from Pol II promoter, poly(A) coupled [goid GO:0030846] [evidence IPI] [pmid 12819204]; go_process: transcription termination from Pol II promoter, poly(A)-independent [goid GO:0030847] [evidence IPI] [pmid 12819204] --- --- --- --- --- --- S0001501 // SWD2 SGDID:S0001501, Chr XI from 403745-404734, Verified ORF // sgd // 11 // --- /// GENSCAN00000018404 // cdna:Genscan chromosome:SGD1:XI:403745:404734:1 // ensembl // 11 // --- /// GENEFINDER00000023034 // cdna:GeneFinder chromosome:SGD1:XI:403745:404734:1 // ensembl // 11 // --- /// YKL018W // cdna:known chromosome:SGD1:XI:403745:404734:1 gene:YKL018W // ensembl // 11 // --- --- No cerevisiae_gene -1.02686939337034 -2.50492409900741 -1.06360098257578 -2.12299619238208 1.01782000610284 Max fold change below threshold 4 2.50492409900741 Max fold change at or above threshold 0.835662095988618 -0.970396145242123 -0.75449779108597 0.889231840339475 542.871948242188 250.114308602227 0.460724318897107 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772625_at YEL046C.S1 Threonine aldolase, catalyzes the cleavage of L-allo-threonine and L-threonine to glycine; involved in glycine biosynthesis 2.50409369298937 2159.25457763672 1394.29510498047 GLY1 6545 // glycine biosynthesis // inferred from direct assay /// 6567 // threonine catabolism // inferred from direct assay 5829 // cytosol // inferred from direct assay 4793 // threonine aldolase activity // inferred from direct assay 1347.80920410156 1508.71960449219 2809.78955078125 1440.78100585938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL046C /GEN=GLY1 /DB_XREF=GI:6320789 /SEG=NC_001137:-67629,68792 /DEF=L-threonine aldolase that catalyzes cleavage of L-allo-threonine and L-threonine to glycine /NOTE=Gly1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 12676688]; go_function: threonine aldolase activity [goid GO:0004793] [evidence IDA] [pmid 9163906]; go_process: glycine biosynthesis [goid GO:0006545] [evidence IDA] [pmid 3086094]; go_process: threonine catabolism [goid GO:0006567] [evidence IDA] [pmid 3086094] --- --- --- --- --- --- S0000772 // GLY1 SGDID:S0000772, Chr V from 68792-67629, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016766 // cdna:Genscan chromosome:SGD1:V:67629:68792:-1 // ensembl // 11 // --- /// GENEFINDER00000019741 // cdna:GeneFinder chromosome:SGD1:V:67629:68792:-1 // ensembl // 11 // --- /// YEL046C // cdna:known chromosome:SGD1:V:67629:68792:-1 gene:YEL046C // ensembl // 11 // --- --- No cerevisiae_gene 2.50409369298937 1.11938663120934 -1.39581593502102 2.08470868297285 1.06897994276555 Max fold change below threshold 4 2.50409369298937 Max fold change at or above threshold -0.620046993815184 -0.387459575658769 1.49316777293808 -0.485661203464124 1776.77484130859 691.827621915529 0.389372702624491 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774091_at YDR017C.S1 Inositol hexaphosphate kinase, phosphorylates inositol hexakisphosphate (InsP6) to diphosphoinositol polyphosphates, required for proper vacuole morphology and involved in salt stress response, contains two leucine heptad repeats 2.50403401472873 491.67707824707 1136.04571533203 KCS1 6950 // response to stress // inferred from mutant phenotype /// 7033 // vacuole organization and biogenesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4428 // inositol or phosphatidylinositol kinase activity // inferred from direct assay 1062.09655761719 559.199951171875 424.154205322266 1209.99487304688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR017C /GEN=KCS1 /DB_XREF=GI:6320220 /SEG=NC_001136:-479111,482263 /DEF=Inositol hexaphosphate kinase, phosphorylates inositol hexakisphosphate (InsP6) to diphosphoinositol polyphosphates, required for proper vacuole morphology and involved in salt stress response, contains two leucine heptad repeats /NOTE=Kcs1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: inositol/phosphatidylinositol kinase activity [goid GO:0004428] [evidence IDA] [pmid 10827188]; go_process: response to stress [goid GO:0006950] [evidence IMP] [pmid 11956213]; go_process: vacuole organization and biogenesis [goid GO:0007033] [evidence IMP] [pmid 10827188] --- --- --- --- --- --- S0002424 // KCS1 SGDID:S0002424, Chr IV from 482263-479111, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023663 // cdna:GeneFinder chromosome:SGD1:IV:479111:480421:-1 // ensembl // 11 // --- /// GENSCAN00000025110 // cdna:Genscan chromosome:SGD1:IV:479111:482263:-1 // ensembl // 11 // --- /// YDR017C // cdna:known chromosome:SGD1:IV:479111:482263:-1 gene:YDR017C // ensembl // 11 // --- --- No cerevisiae_gene -2.3381267148672 -1.89931446773453 1.06405017070475 -2.50403401472873 1.13925128969582 Max fold change below threshold 4 2.50403401472873 Max fold change at or above threshold 0.651697816163131 -0.668568898203836 -1.02310778527722 1.03997886731792 813.861396789551 380.905313277127 0.468022337439383 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775192_at SPCC737.06c.S1 --- 2.50401352340525 --- --- --- --- 0.949755609035492 1.76308763027191 0.474317818880081 1.34343373775482 0.901123046875 0.888427972793579 0.99975597858429 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC737.06c /DEF=aldoketo reductase (predicted) --- --- --- --- --- --- SPCC737.06c // |||aldo/keto reductase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.50401352340525 1.8563592712681 1.03583041692254 -2.00236122538675 1.41450466306708 Max fold change below threshold 0 2.50401352340525 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769773_at YDL176W.S1 Hypothetical protein 2.50374093216747 129.796051025391 347.927597045898 --- --- --- --- 310.871856689453 135.429153442383 124.162948608398 384.983337402344 0.00122069998178631 0.00292969006113708 0.00122069998178631 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL176W /GEN=DLD2 /DB_XREF=GI:6320025 /SEG=NC_001136:+142098,144224 /DEF=Hypothetical ORF /NOTE=Ydl176wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002335 // YDL176W SGDID:S0002335, Chr IV from 142098-144224, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023685 // cdna:GeneFinder chromosome:SGD1:IV:142098:144224:1 // ensembl // 11 // --- /// GENSCAN00000024970 // cdna:Genscan chromosome:SGD1:IV:142098:144224:1 // ensembl // 11 // --- /// YDL176W // cdna:known chromosome:SGD1:IV:142098:144224:1 gene:YDL176W // ensembl // 11 // --- --- No cerevisiae_gene -1.61778828000883 -2.29545743134037 1.15181263239756 -2.50374093216747 1.23839881005029 Max fold change below threshold 4 2.50374093216747 Max fold change at or above threshold 0.555618573712156 -0.798070918625362 -0.884999259445609 1.12745160435881 238.861824035645 129.603357520431 0.54258715491133 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778597_at YPL219W.S1 Cyclin, interacts with Pho85p cyclin-dependent kinase (Cdk) to phosphorylate and regulate glycogen synthase, also activates Pho85p for Glc8p phosphorylation 2.50353247617294 1023.96173095703 2250.42822265625 PCL8 5979 // regulation of glycogen biosynthesis // inferred from mutant phenotype /// 5979 // regulation of glycogen biosynthesis // inferred from genetic interaction /// 5981 // regulation of glycogen catabolism // inferred from genetic interaction 307 // cyclin-dependent protein kinase holoenzyme complex // traceable author statement 16538 // cyclin-dependent protein kinase regulator activity // inferred from sequence similarity /// 16538 // cyclin-dependent protein kinase regulator activity // traceable author statement 2270.98022460938 1140.81311035156 907.1103515625 2229.87622070313 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL219W /GEN=PCL8 /DB_XREF=GI:6325037 /SEG=NC_001148:+136749,138227 /DEF=PHO85 cyclin /NOTE=Pcl8p; go_component: cyclin-dependent protein kinase holoenzyme complex [goid GO:0000307] [evidence TAS] [pmid 11602261]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS] [pmid 11602261]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence ISS] [pmid 9584169]; go_process: regulation of glycogen biosynthesis [goid GO:0005979] [evidence IGI,IMP] [pmid 9584169]; go_process: regulation of glycogen catabolism [goid GO:0005981] [evidence IGI] [pmid 11602261] --- --- --- --- --- --- S0006140 // PCL8 SGDID:S0006140, Chr XVI from 136749-138227, Verified ORF // sgd // 10 // --- /// GENSCAN00000017019 // cdna:Genscan chromosome:SGD1:XVI:136749:138227:1 // ensembl // 10 // --- /// GENEFINDER00000021022 // cdna:GeneFinder chromosome:SGD1:XVI:136749:138227:1 // ensembl // 10 // --- /// YPL219W // cdna:known chromosome:SGD1:XVI:136749:138227:1 gene:YPL219W // ensembl // 10 // --- --- No cerevisiae_gene -2.04141072957352 -1.99066806298319 1.00401454106054 -2.50353247617294 -1.01843331191419 Max fold change below threshold 4 2.50353247617294 Max fold change at or above threshold 0.886789338965216 -0.694535173789698 -1.02153097512682 0.829276809951299 1637.19497680664 714.696512412171 0.436537200844698 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774590_at YOR070C.S1 Cis-golgi GTPase-activating protein (GAP) for the Rab family members Ypt1p (in vivo) and for Ypt1p, Sec4p, Ypt7p, and Ypt51p (in vitro); involved in vesicle docking and fusion 2.50351528348526 453.746765136719 599.364196777344 GYP1 16192 // vesicle-mediated transport // inferred from direct assay 5739 // mitochondrion // inferred from direct assay /// 5794 // Golgi apparatus // inferred from direct assay 5097 // Rab GTPase activator activity // inferred from mutant phenotype /// 5097 // Rab GTPase activator activity // inferred from direct assay /// 5097 // Rab GTPase activator activity // inferred from sequence similarity /// 5097 // Rab GTPase activator activity // inferred from physical interaction 573.875793457031 419.296661376953 488.196868896484 624.852600097656 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR070C /GEN=GYP1 /DB_XREF=GI:6324644 /SEG=NC_001147:-455908,457821 /DEF=Cis-golgi GTPase-activating protein (GAP) for the Rab family members Ypt1p (in vivo) and for Ypt1p, Sec4p, Ypt7p, and Ypt51p (in vitro); involved in vesicle docking and fusion /NOTE=Gyp1p; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 11359917]; go_function: Rab GTPase activator activity [goid GO:0005097] [evidence IDA,IMP,IPI,ISS] [pmid 10508155]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IDA] [pmid 11118206] --- --- --- --- --- --- S0005596 // GYP1 SGDID:S0005596, Chr XV from 457821-455908, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017512 // cdna:Genscan chromosome:SGD1:XV:455908:457821:-1 // ensembl // 11 // --- /// GENEFINDER00000022624 // cdna:GeneFinder chromosome:SGD1:XV:455908:457212:-1 // ensembl // 11 // --- /// YOR070C // cdna:known chromosome:SGD1:XV:455908:457821:-1 gene:YOR070C // ensembl // 11 // --- --- No cerevisiae_gene -2.50351528348526 -1.36866292131315 1.25642760062584 -1.17550076622616 1.08882898916774 Max fold change below threshold 4 2.50351528348526 Max fold change at or above threshold 0.519644065129273 -1.17785378166214 -0.421231899173517 1.07944161570638 526.555480957031 91.0629326406875 0.172940812381589 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772779_at YLR226W.S1 Cyclin for the Sgv1p (Bur1p) protein kinase; Sgv1p and Bur2p comprise a CDK-cyclin complex involved in transcriptional regulation through its phosphorylation of the carboxy-terminal domain of the largest subunit of RNA polymerase II 2.50327955950828 158.766094207764 323.357299804688 BUR2 70 // mitotic sister chromatid segregation // inferred from genetic interaction /// 6350 // transcription // inferred from direct assay /// 6350 // transcription // inferred from physical interaction /// 6350 // transcription // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 16538 // cyclin-dependent protein kinase regulator activity // inferred from direct assay /// 16538 // cyclin-dependent protein kinase regulator activity // inferred from physical interaction /// 16538 // cyclin-dependent protein kinase regulator activity // inferred from sequence similarity 289.622924804688 115.697395324707 201.83479309082 357.091674804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR226W /GEN=BUR2 /DB_XREF=GI:6323255 /SEG=NC_001144:+589356,590543 /DEF=bypass UAS Requirement /NOTE=Bur2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence IDA,IPI,ISS] [pmid 10982824]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence IGI] [pmid 10454593]; go_process: transcription [goid GO:0006350] [evidence IDA,IMP,IPI] [pmid 10982824] --- --- --- --- --- --- S0004216 // BUR2 SGDID:S0004216, Chr XII from 589356-590543, Verified ORF // sgd // 11 // --- /// YLR226W // cdna:known chromosome:SGD1:XII:589356:590543:1 gene:YLR226W // ensembl // 11 // --- --- No cerevisiae_gene 1.48517422514036 -2.50327955950828 1.05804982822577 -1.43495043827436 1.23295376236359 Max fold change below threshold 4 2.50327955950828 Max fold change at or above threshold 0.462480146352893 -1.19392575553729 -0.373583310929838 1.10502892011423 241.061697006226 105.001756683859 0.435580426039841 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774319_at SPAC2F3.15.S1 --- 2.50227896403967 --- --- --- --- 5.04139280319214 12.6149711608887 3.36420845985413 3.91868257522583 0.219482004642487 0.149657994508743 0.357666015625 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F3.15 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPAC2F3.15 // |lsk1||latrunculin sensitive kinase Lsk1 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.55748778891635 2.50227896403967 -2.10680481187383 -1.49853757974639 -1.28650195733233 Max fold change below threshold 4 2.50227896403967 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772622_at YEL065W.S1 Ferrioxamine B transporter, member of the ARN family of transporters that specifically recognize siderophore-iron chelates; transcription is induced during iron deprivation and diauxic shift; potentially phosphorylated by Cdc28p 2.50190172217416 160.45597076416 392.052597045898 SIT1 6879 // iron ion homeostasis // inferred from mutant phenotype /// 6879 // iron ion homeostasis // inferred from direct assay /// 15892 // iron-siderophore transport // inferred from mutant phenotype 5768 // endosome // traceable author statement /// 16023 // cytoplasmic membrane-bound vesicle // inferred from direct assay 15344 // siderophore-iron (ferrioxamine) uptake transporter activity // inferred from mutant phenotype /// 15344 // siderophore-iron (ferrioxamine) uptake transporter activity // inferred from sequence similarity 376.937591552734 150.660430908203 170.251510620117 407.167602539063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL065W /GEN=SIT1 /DB_XREF=GI:6320770 /SEG=NC_001137:+27657,29543 /DEF=Ferrioxamine B transporter, member of the ARN family of transporters that specifically recognize siderophore-iron chelates; transcription is induced during iron deprivation and diauxic shift; potentially phosphorylated by Cdc28p /NOTE=Sit1p; go_component: cytoplasmic vesicle [goid GO:0016023] [evidence IDA] [pmid 10748025]; go_component: endosome [goid GO:0005768] [evidence TAS] [pmid 12196168]; go_function: siderochrome-iron (ferrioxamine) uptake transporter activity [goid GO:0015344] [evidence IMP,ISS] [pmid 9884238]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IDA,IMP] [pmid 9884238]; go_process: iron-siderochrome transport [goid GO:0015892] [evidence IMP] [pmid 9884238] --- --- --- --- --- S0000791 // span:68-90,105-127,132-152,162-184,191-213,228-250,285-307,317-335,355-372,392-414,421-440,445-467,487-509,560-579 // numtm:14 S0000791 // SIT1 SGDID:S0000791, Chr V from 27657-29543, Verified ORF // sgd // 11 // --- /// GENSCAN00000016751 // cdna:Genscan chromosome:SGD1:V:27657:29543:1 // ensembl // 11 // --- /// GENEFINDER00000019727 // cdna:GeneFinder chromosome:SGD1:V:27657:29543:1 // ensembl // 11 // --- /// YEL065W // cdna:known chromosome:SGD1:V:27657:29543:1 gene:YEL065W // ensembl // 11 // --- --- No cerevisiae_gene -1.96955373705215 -2.50190172217416 1.24603337362267 -2.21400438786001 1.08019898164521 Max fold change below threshold 4 2.50190172217416 Max fold change at or above threshold 0.748470802852194 -0.933653593451224 -0.788015239852182 0.973198030451211 276.254283905029 134.518684314781 0.486937912467001 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778398_at YNR040W.S1 Hypothetical protein 2.50094018587003 263.704498291016 675.921844482422 --- --- 5739 // mitochondrion // inferred from direct assay --- 653.647216796875 261.360595703125 266.048400878906 698.196472167969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR040W /GEN=ZRG17 /DB_XREF=GI:6324368 /SEG=NC_001146:+699689,700459 /DEF=Hypothetical ORF /NOTE=Ynr040wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005323 // YNR040W SGDID:S0005323, Chr XIV from 699690-700460, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020069 // cdna:Genscan chromosome:SGD1:XIV:699699:700460:1 // ensembl // 11 // --- /// GENEFINDER00000020497 // cdna:GeneFinder chromosome:SGD1:XIV:699699:700460:1 // ensembl // 11 // --- /// YNR040W // cdna:known chromosome:SGD1:XIV:699690:700460:1 gene:YNR040W // ensembl // 11 // --- --- No cerevisiae_gene -1.02457080004275 -2.50094018587003 1.12800302838004 -2.45687331567306 1.06815489185344 Max fold change below threshold 4 2.50094018587003 Max fold change at or above threshold 0.770161739848814 -0.87329960022505 -0.853660320774952 0.956798181151188 469.813171386719 238.695375138012 0.508064459822335 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777173_at SPAC688.13.S1 --- 2.50048227660185 --- --- --- --- 2.12105441093445 4.87887811660767 2.79831266403198 4.72039175033569 0.525390625 0.432372987270355 0.533936023712158 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC688.13 /GEN=scn1 /DEF=TatD DNase family --- --- --- --- --- --- SPAC688.13 // |scn1||TatD DNase family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.08410463305894 2.30021355956552 2.50048227660185 1.31930263061906 2.22549300291457 Max fold change below threshold 3 2.50048227660185 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773426_at YNL298W.S1 Involved in localizing cell growth with respect to the septin ring; protein kinase, homologous to Ste20p, interacts with CDC42 2.49999516404496 225.596138000488 517.896591186523 CLA4 910 // cytokinesis // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // traceable author statement /// 7096 // regulation of exit from mitosis // inferred from mutant phenotype /// 7118 // budding cell apical bud growth // inferred from mutant phenotype /// 7266 // Rho protein signal transduction // traceable author statement /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype 30478 // actin cap // inferred from direct assay 4674 // protein serine/threonine kinase activity // traceable author statement 489.067352294922 195.627319335938 255.564956665039 546.725830078125 0.000244141003349796 0.000732421991415322 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL298W /GEN=CLA4 /DB_XREF=GI:6324031 /SEG=NC_001146:+68913,71441 /DEF=Involved in localizing cell growth with respect to the septin ring /NOTE=Cla4p; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IDA] [pmid 10652251]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence TAS] [pmid 10652251]; go_process: Rho protein signal transduction [goid GO:0007266] [evidence TAS] [pmid 10652251]; go_process: apical bud growth [goid GO:0007118] [evidence IMP] [pmid 10652251]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IMP] [pmid 10652251]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 10652251] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 9.0E-60 /// hanks // 2.1.17 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH // 1.0E-69 --- --- S0005242 // CLA4 SGDID:S0005242, Chr XIV from 68913-71441, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020673 // cdna:GeneFinder chromosome:SGD1:XIV:69534:71441:1 // ensembl // 11 // --- /// GENSCAN00000019801 // cdna:Genscan chromosome:SGD1:XIV:70155:71441:1 // ensembl // 11 // --- /// YNL298W // cdna:known chromosome:SGD1:XIV:68913:71441:1 gene:YNL298W // ensembl // 11 // --- --- No cerevisiae_gene -1.45132189012297 -2.49999516404496 -1.38103651339309 -1.913671415193 1.11789475930594 Max fold change below threshold 4 2.49999516404496 Max fold change at or above threshold 0.681538169617246 -1.02310638608893 -0.674918151086842 1.01648636755853 371.746364593506 172.141477809385 0.463061630737444 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775617_at YPR153W.S1 Hypothetical protein 2.4998462390663 160.717552185059 123.198623657227 --- --- --- --- 109.111190795898 115.293975830078 206.141128540039 137.286056518555 0.00195312988944352 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR153W /GEN=NCE102 /DB_XREF=GI:6325411 /SEG=NC_001148:+833805,834239 /DEF=Hypothetical ORF /NOTE=Ypr153wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0006357 // span:49-71,83-105,115-137 // numtm:3 S0006357 // YPR153W SGDID:S0006357, Chr XVI from 833807-834241, Uncharacterized ORF // sgd // 11 // --- /// YPR153W // cdna:known chromosome:SGD1:XVI:833807:834241:1 gene:YPR153W // ensembl // 11 // --- --- No cerevisiae_gene 1.91187002243553 1.05666499457187 2.4998462390663 1.88927576572456 1.2582215950274 Max fold change below threshold 4 2.4998462390663 Max fold change at or above threshold -0.738727514989904 -0.59967652924227 1.44347814407267 -0.1050740998405 141.958087921143 44.4641582433721 0.313220323649836 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774933_at YKL143W.S1 Protein required for growth at low temperature 2.4997509060989 175.778549194336 294.818817138672 LTV1 6970 // response to osmotic stress // inferred from mutant phenotype /// 6979 // response to oxidative stress // inferred from mutant phenotype /// 42274 // ribosomal small subunit biogenesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 288.521301269531 174.95866394043 176.598434448242 301.116333007813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL143W /GEN=LTV1 /DB_XREF=GI:6322706 /SEG=NC_001143:+176786,178177 /DEF=Protein required for viability at low temperature /NOTE=Ltv1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.DNA-binding protein Mj223 // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; DNA-binding protein Mj223 // 7.30000019073486 --- S0001626 // LTV1 SGDID:S0001626, Chr XI from 176786-178177, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023020 // cdna:GeneFinder chromosome:SGD1:XI:176786:178177:1 // ensembl // 10 // --- /// GENSCAN00000018312 // cdna:Genscan chromosome:SGD1:XI:177209:178177:1 // ensembl // 10 // --- /// YKL143W // cdna:known chromosome:SGD1:XI:176786:178177:1 gene:YKL143W // ensembl // 10 // --- --- No cerevisiae_gene 2.4997509060989 -1.64908267342375 -1.24413133677848 -1.63377043613652 1.04365373261129 Max fold change below threshold 4 2.4997509060989 Max fold change at or above threshold 0.772201115420176 -0.875466705915375 -0.851675455873621 0.95494104636882 235.298683166504 68.9232598091592 0.292918170563612 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770267_at YMR301C.S1 Mitochondrial inner membrane transporter, exports mitochondrially synthesized precursors of iron-sulfur (Fe/S) clusters to the cytosol; member of the ATP-binding cassette (ABC) transporter family 2.49929477272496 174.968223571777 412.335205078125 ATM1 6879 // iron ion homeostasis // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from mutant phenotype /// 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from sequence similarity 385.213836669922 154.129013061523 195.807434082031 439.456573486328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR301C /GEN=ATM1 /DB_XREF=GI:6323959 /SEG=NC_001145:-867554,869626 /DEF=Mitochondrial inner membrane transporter, exports mitochondrially synthesized precursors of iron-sulfur (Fe/S) clusters to the cytosol; member of the ATP-binding cassette (ABC) transporter family /NOTE=Atm1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 7828591]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence IMP,ISS] [pmid 7828591]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IMP] [pmid 9428742] --- --- --- --- --- S0004916 // span:110-132,147-169,224-246,250-272,339-361 // numtm:5 S0004916 // ATM1 SGDID:S0004916, Chr XIII from 869626-867554, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018967 // cdna:Genscan chromosome:SGD1:XIII:867554:869212:-1 // ensembl // 11 // --- /// GENEFINDER00000021792 // cdna:GeneFinder chromosome:SGD1:XIII:867554:868555:-1 // ensembl // 11 // --- /// YMR301C // cdna:known chromosome:SGD1:XIII:867554:869626:-1 gene:YMR301C // ensembl // 11 // --- --- No cerevisiae_gene -1.43534765714592 -2.49929477272496 -1.19037111774781 -1.96730955837224 1.1408120156984 Max fold change below threshold 4 2.49929477272496 Max fold change at or above threshold 0.654668112805847 -0.99758569581387 -0.699585468914125 1.04250305192215 293.651714324951 139.860366732303 0.476279755607133 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770383_at YPR069C.S1 Spermidine synthase, involved in biosynthesis of spermidine and also in biosynthesis of pantothenic acid; spermidine is required for growth of wild-type cells 2.49899091010227 1584.66052246094 1044.02227783203 SPE3 8295 // spermidine biosynthesis // inferred from mutant phenotype /// 15940 // pantothenate biosynthesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4766 // spermidine synthase activity // inferred from mutant phenotype /// 4766 // spermidine synthase activity // inferred from sequence similarity 980.951416015625 1451.16101074219 1718.16003417969 1107.09313964844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR069C /GEN=SPE3 /DB_XREF=GI:6325326 /SEG=NC_001148:-684551,685432 /DEF=biosynthesis of spermidine /NOTE=Spe3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: spermidine synthase activity [goid GO:0004766] [evidence IMP,ISS] [pmid 9073064]; go_process: pantothenate biosynthesis [goid GO:0015940] [evidence IMP] [pmid 11154694]; go_process: spermidine biosynthesis [goid GO:0008295] [evidence IMP] [pmid 9073064] --- --- --- --- --- --- S0006273 // SPE3 SGDID:S0006273, Chr XVI from 685434-684553, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017237 // cdna:Genscan chromosome:SGD1:XVI:684553:685353:-1 // ensembl // 11 // --- /// GENEFINDER00000020846 // cdna:GeneFinder chromosome:SGD1:XVI:684553:685434:-1 // ensembl // 11 // --- /// YPR069C // cdna:known chromosome:SGD1:XVI:684553:685434:-1 gene:YPR069C // ensembl // 11 // --- --- No cerevisiae_gene 2.49899091010227 1.47934034963366 -1.1359578737591 1.7515240878681 1.12859120398151 Max fold change below threshold 4 2.49899091010227 Max fold change at or above threshold -0.996356495006628 0.408893830499116 1.20683685166067 -0.619374187153156 1314.34140014648 334.60913418208 0.254583119838413 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773791_at SPAC589.05c.S1 --- 2.49876065617663 --- --- --- --- 0.526265442371368 0.357739269733429 1.31501138210297 0.882477283477783 0.888427972793579 0.969726979732513 0.725830018520355 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC589.05c /DEF=conserved protein --- --- --- --- --- --- SPAC589.05c // |||conserved protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.61429270116566 -1.47108658986059 -1.12112960810673 2.49876065617663 1.6768672468808 Max fold change below threshold 0 2.49876065617663 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777256_at SPBC1685.05.S1 --- 2.49869467527185 --- --- --- --- 1.98728680610657 3.38628005981445 3.71634554862976 0.795329988002777 0.601073980331421 0.725830018520355 0.665526986122131 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1685.05 /DEF=serine protease (predicted) --- --- --- --- --- --- SPBC1685.05 // |||serine protease |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.85984707380864 1.70397148987707 -2.05070455038487 1.87005999194989 -2.49869467527185 Max fold change below threshold 2 2.49869467527185 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771512_at YMR225C.S1 Mitochondrial ribosomal protein of the large subunit 2.4984249931921 460.312225341797 957.976989746094 MRPL44 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 914.728759765625 385.128601074219 535.495849609375 1001.22521972656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR225C /GEN=MRPL44 /DB_XREF=GI:6323881 /SEG=NC_001145:-720959,721402 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl44p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0004838 // MRPL44 SGDID:S0004838, Chr XIII from 721402-721345,721197-720959, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YMR225C // cdna:known chromosome:SGD1:XIII:720959:721402:-1 gene:YMR225C // ensembl // 11 // --- --- No cerevisiae_gene -2.4984249931921 -2.37512549629973 1.1878369105425 -1.70819019499943 1.09455968125797 Max fold change below threshold 4 2.4984249931921 Max fold change at or above threshold 0.69471526392978 -1.09492323712465 -0.586798356760069 0.987006329954944 709.144607543945 295.92577404843 0.417299618301183 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770825_at YJL083W.S1 Protein involved in regulation of phosphatidylinositol 4,5-bisphosphate concentrations; Irs4p and Tax4p bind and activate the phosphatase Inp51p 2.49764887498037 562.579956054688 922.072265625 TAX4 7047 // cell wall organization and biogenesis // inferred from genetic interaction /// 48017 // inositol lipid-mediated signaling // inferred from genetic interaction --- --- 830.343322753906 465.83349609375 659.326416015625 1013.80120849609 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL083W /GEN=EXO70 /DB_XREF=GI:6322378 /SEG=NC_001142:+278757,280571 /DEF=Hypothetical ORF /NOTE=Yjl083wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003619 // YJL083W SGDID:S0003619, Chr X from 278757-280571, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024074 // cdna:Genscan chromosome:SGD1:X:278757:280571:1 // ensembl // 11 // --- /// GENEFINDER00000024501 // cdna:GeneFinder chromosome:SGD1:X:278757:280571:1 // ensembl // 11 // --- /// YJL083W // cdna:known chromosome:SGD1:X:278757:280571:1 gene:YJL083W // ensembl // 11 // --- --- No cerevisiae_gene -2.49764887498037 -1.78248951549589 1.28656763703067 -1.25938124513766 1.22094220633187 Max fold change below threshold 4 2.49764887498037 Max fold change at or above threshold 0.375553832933383 -1.17974494973839 -0.354144977393408 1.15833609419841 742.326110839844 234.366432174519 0.315718966034166 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779560_at YHR160C.S1 Part of a two-member peroxin family (Pex18p and Pex21p) specifically required for peroxisomal targeting of the Pex7p peroxisomal signal recognition factor and PTS2 peroxisomal matrix proteins 2.49714364399 524.754486083984 548.821228027344 PEX18 6625 // protein-peroxisome targeting // inferred from mutant phenotype /// 6625 // protein-peroxisome targeting // inferred from physical interaction 5777 // peroxisome // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 5515 // protein binding // inferred from direct assay 518.013427734375 549.669982910156 499.838989257813 579.629028320313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR160C /GEN=PEX18 /DB_XREF=GI:6321954 /SEG=NC_001140:-419222,420073 /DEF=Peroxin; Pex18p and Pex21p are partially functionally redundant. /NOTE=Pex18p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 9864360]; go_component: peroxisome [goid GO:0005777] [evidence IDA] [pmid 9864360]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 9864360]; go_process: protein-peroxisome targeting [goid GO:0006625] [evidence IMP,IPI] [pmid 9864360] --- --- --- --- --- --- S0001203 // PEX18 SGDID:S0001203, Chr VIII from 420074-419223, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016687 // cdna:Genscan chromosome:SGD1:VIII:419223:420074:-1 // ensembl // 11 // --- /// YHR160C // cdna:known chromosome:SGD1:VIII:419223:420074:-1 gene:YHR160C // ensembl // 11 // --- --- No cerevisiae_gene -2.49714364399 1.06111145673238 2.13898263865815 -1.03636058584295 1.11894595253143 Max fold change below threshold 4 2.49714364399 Max fold change at or above threshold -0.533228698479564 0.365876324946487 -1.04941654145518 1.21676891498826 536.787857055664 35.2089626361485 0.065591950662359 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778886_at YOL040C.S1 Protein component of the small (40S) ribosomal subunit; has similarity to E. coli S19 and rat S15 ribosomal proteins 2.49680589771606 3628.30993652344 7601.65942382813 RPS15 56 // ribosomal small subunit-nucleus export // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 8556.8232421875 3829.51196289063 3427.10791015625 6646.49560546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL040C /GEN=RPS15 /DB_XREF=GI:6324533 /SEG=NC_001147:-253147,253575 /DEF=Protein component of the small (40S) ribosomal subunit; has similarity to E. coli S19 and rat S15 ribosomal proteins /NOTE=Rps15p; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0005400 // RPS15 SGDID:S0005400, Chr XV from 253575-253147, reverse complement, Verified ORF // sgd // 11 // --- /// D11386 // Saccharomyces cerevisiae mRNA for ribosomal protein S21, complete cds. // gb // 11 // --- /// GENSCAN00000017436 // cdna:Genscan chromosome:SGD1:XV:253147:253575:-1 // ensembl // 11 // --- /// GENEFINDER00000022660 // cdna:GeneFinder chromosome:SGD1:XV:253147:253575:-1 // ensembl // 11 // --- /// YOL040C // cdna:known chromosome:SGD1:XV:253147:253575:-1 gene:YOL040C // ensembl // 11 // --- --- No cerevisiae_gene -1.1939952125384 -2.23444222791475 -1.75829321973902 -2.49680589771606 -1.28741877676816 Max fold change below threshold 4 2.49680589771606 Max fold change at or above threshold 1.21137031539315 -0.73520983666233 -0.900909046187607 0.42474856745679 5614.98468017578 2428.52125780955 0.432507192118203 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775429_at SPBC83.18c.S1 --- 2.49679877983914 --- --- --- --- 1.22407269477844 1.41900491714478 1.51579988002777 2.66372036933899 0.870360970497131 0.696289002895355 0.904784977436066 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC83.18c /DEF=hypothetical protein --- --- --- --- --- --- SPBC83.18c // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.49679877983914 1.15924889363014 1.84746986492169 1.23832504923421 2.17611288994656 Max fold change below threshold 1 2.49679877983914 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778215_at YER056C.S1 Purine-cytosine permease, mediates purine (adenine, guanine, and hypoxanthine) and cytosine accumulation 2.49619530751412 1180.51953125 1138.75402832031 FCY2 6863 // purine transport // inferred from direct assay /// 15856 // cytosine transport // inferred from direct assay 5886 // plasma membrane // inferred from direct assay 15392 // cytosine-purine permease activity // inferred from direct assay 1215.17102050781 1024.7626953125 1336.2763671875 1062.33703613281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER056C /GEN=FCY2 /DB_XREF=GI:6320897 /SEG=NC_001137:-266511,268112 /DEF=Purine-cytosine permease, mediates purine (adenine, guanine, and hypoxanthine) and cytosine accumulation /NOTE=Fcy2p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 8267570]; go_function: cytosine-purine permease activity [goid GO:0015392] [evidence IDA] [pmid 9092500]; go_process: cytosine transport [goid GO:0015856] [evidence IDA] [pmid 9092500]; go_process: purine transport [goid GO:0006863] [evidence IDA] [pmid 9092500] --- --- --- --- --- S0000858 // span:94-116,121-143,164-186,201-223,230-249,259-281,302-324,344-366,371-390,400-422,429-448,463-485 // numtm:12 S0000858 // FCY2 SGDID:S0000858, Chr V from 268112-266511, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016850 // cdna:Genscan chromosome:SGD1:V:266511:268112:-1 // ensembl // 11 // --- /// GENEFINDER00000019683 // cdna:GeneFinder chromosome:SGD1:V:266511:268112:-1 // ensembl // 11 // --- /// YER056C // cdna:known chromosome:SGD1:V:266511:268112:-1 gene:YER056C // ensembl // 11 // --- --- No cerevisiae_gene 2.49619530751412 -1.18580723719382 -1.07363587790854 1.09966115438556 -1.14386581581619 Max fold change below threshold 4 2.49619530751412 Max fold change at or above threshold 0.386475842618576 -0.93862047568633 1.229276433652 -0.677131800584242 1159.63677978516 143.693950820788 0.12391289524933 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773932_at SPAC1805.13.S1 --- 2.49604268754981 --- --- --- --- 0.632155478000641 0.496705323457718 1.57788705825806 0.633042752742767 0.753906011581421 0.919434010982513 0.633789002895355 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1805.13 /GEN=rpl14 /DEF=60S ribosomal protein L14 --- --- --- --- --- --- AJ002732 // Schizosaccharomyces pombe mRNA for ribosomal protein l14. // gb // 10 // --- /// AF055375 // Schizosaccharomyces pombe ribosomal protein L14 (rpl14+) mRNA, complete cds. // gb // 11 // --- /// SPAC1805.13 // |rpl14||60S ribosomal protein L14|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.12638319245613 -1.27269720726972 -1.27895791150588 2.49604268754981 1.00140357043956 Max fold change below threshold 0 2.49604268754981 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773835_at SPCC1795.11.S1 --- 2.49532123292509 --- --- --- --- 5.92101430892944 14.1406669616699 11.6152486801147 5.84587669372559 0.219482004642487 0.303710997104645 0.334473013877869 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1795.11 /GEN=sum3 /DEF=DEADDEAH box helicase --- --- --- --- --- --- AJ237697 // Schizosaccharomyces pombe mRNA for putative RNA helicase ded1 gene. // gb // 11 // --- /// AB012389 // Schizosaccharomyces pombe mRNA for Moc2 RNA helicase, complete cds. // gb // 11 // --- /// AF025536 // Schizosaccharomyces pombe suppressor of uncontrolled mitosis (sum3) mRNA, complete cds. // gb // 11 // --- /// SPCC1795.11 // |sum3|ded1, slh3, moc2|DEAD/DEAH box ATP-dependent RNA helicase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.19404736968288 2.38821698848869 2.49532123292509 1.96169914039861 -1.0128530961463 Max fold change below threshold 4 2.49532123292509 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772978_at YDR430C.S1 Lysine-specific metalloprotease of the mitochondrial intermembrane space, member of the pitrilysin family; degrades proteins and presequence peptides cleaved from imported proteins; required for normal mitochondrial morphology 2.49502190859333 451.664535522461 1029.74227905273 CYM1 6090 // pyruvate metabolism // RCA /// 6508 // proteolysis and peptidolysis // inferred from direct assay /// 6508 // proteolysis and peptidolysis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5758 // mitochondrial intermembrane space // inferred from direct assay 4222 // metalloendopeptidase activity // inferred from direct assay /// 4222 // metalloendopeptidase activity // inferred from mutant phenotype 994.653869628906 398.655364990234 504.673706054688 1064.83068847656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR430C /GEN=CYM1 /DB_XREF=GI:6320639 /SEG=NC_001136:-1325489,1328458 /DEF=Cytosolic metalloprotease; computational analysis of large-scale protein-protein interaction data suggests a possible role in pyruvate metabolism /NOTE=Cym1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: pyruvate metabolism [goid GO:0006090] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0002838 // CYM1 SGDID:S0002838, Chr IV from 1328460-1325491, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENEFINDER00000023627 // cdna:GeneFinder chromosome:SGD1:IV:1325491:1328145:-1 // ensembl // 10 // --- /// GENSCAN00000025439 // cdna:Genscan chromosome:SGD1:IV:1325491:1328460:-1 // ensembl // 10 // --- /// YDR430C // cdna:known chromosome:SGD1:IV:1325491:1328460:-1 gene:YDR430C // ensembl // 10 // --- --- No cerevisiae_gene -1.78512472829727 -2.49502190859333 -1.11107672604942 -1.9708850643412 1.07055400978216 Max fold change below threshold 4 2.49502190859333 Max fold change at or above threshold 0.751854777508417 -1.01267960832864 -0.698797934328397 0.959622765148621 740.703407287598 337.765310453807 0.456006151896451 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779334_at YDL219W.S1 D-Tyr-tRNA(Tyr) deacylase, functions in protein translation, may affect nonsense suppression via alteration of the protein synthesis machinery; ubiquitous among eukaryotes 2.49494783130613 116.71354675293 316.389190673828 DTD1 19478 // D-amino acid catabolism // inferred from direct assay /// 43037 // translation // traceable author statement 5737 // cytoplasm // inferred from direct assay 16788 // hydrolase activity, acting on ester bonds // inferred from direct assay 284.887268066406 114.185661315918 119.241432189941 347.89111328125 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL219W /GEN=DTD1 /DB_XREF=GI:6319982 /SEG=NC_001136:+65243,65766 /DEF=D-Tyr-tRNA(Tyr) deacylase, functions in protein translation, may affect nonsense suppression via alteration of the protein synthesis machinery; ubiquitous among eukaryotes /NOTE=Dtd1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: hydrolase activity, acting on ester bonds [goid GO:0016788] [evidence IDA] [pmid 10766779]; go_process: D-amino acid catabolism [goid GO:0019478] [evidence IDA] [pmid 10766779]; go_process: translation [goid GO:0043037] [evidence TAS] [pmid 10618371] --- --- --- --- --- --- S0002378 // DTD1 SGDID:S0002378, Chr IV from 65243-65307,65379-65766, intron sequence removed, Verified ORF // sgd // 11 // --- /// YDL219W // cdna:known chromosome:SGD1:IV:65243:65766:1 gene:YDL219W // ensembl // 11 // --- --- No cerevisiae_gene 1.05707545623622 -2.49494783130613 1.30967588647939 -2.38916342108844 1.2211536010102 Max fold change below threshold 4 2.49494783130613 Max fold change at or above threshold 0.57845426592799 -0.866512048416825 -0.823715622858349 1.11177340534718 216.551368713379 118.135353783586 0.545530395330569 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771230_at YDR288W.S1 Essential protein of unknown function; interacts with Nse4p, which is a component of the Smc5/6 DNA repair complex 2.4949105608325 290.026123046875 611.116851806641 NSE3 6281 // DNA repair // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3677 // DNA binding // inferred from sequence similarity 614.584228515625 246.335174560547 333.717071533203 607.649475097656 0.000244141003349796 0.00122069998178631 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR288W /GEN=ZIP1 /DB_XREF=GI:6320494 /SEG=NC_001136:+1037187,1038098 /DEF=Protein required for cell viability /NOTE=Ydr288wp --- --- --- --- --- --- S0002696 // NSE3 SGDID:S0002696, Chr IV from 1037189-1038100, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025321 // cdna:Genscan chromosome:SGD1:IV:1037189:1038100:1 // ensembl // 11 // --- /// YDR288W // cdna:known chromosome:SGD1:IV:1037189:1038100:1 gene:YDR288W // ensembl // 11 // --- --- No cerevisiae_gene -1.70938156444175 -2.4949105608325 1.19860819191074 -1.84163257124374 -1.01141242394203 Max fold change below threshold 4 2.4949105608325 Max fold change at or above threshold 0.868692139746954 -1.08173595819392 -0.618918456624361 0.831962275071327 450.571487426758 188.804219106487 0.419032771436027 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777717_at SPCC1223.05c.S1 --- 2.49475063406682 --- --- --- --- 40.9689826965332 67.2493591308594 34.9833106994629 22.5141296386719 0.0561522990465164 0.111571997404099 0.149657994508743 0.0439453125 M A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1223.05c /GEN=rpl3702 /DEF=60S ribosomal protein L37 --- --- --- --- --- --- SPCC1223.05c // |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.49475063406682 1.64147007576417 -1.43961591736805 -1.1711007871294 -1.81970093243853 Max fold change below threshold 4 2.49475063406682 Max fold change at or above threshold MAAAAP No 4 0 MAAP 2 1 1 No No x = 1
1778604_at YGR194C.S1 Xylulokinase, converts D-xylulose and ATP to xylulose 5-phosphate and ADP; rate limiting step in fermentation of xylulose; required for xylose fermentation by recombinant S. cerevisiae strains 2.49372742308128 1548.63763427734 1420.23040771484 XKS1 5998 // xylulose catabolism // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 4856 // xylulokinase activity // inferred from mutant phenotype /// 4856 // xylulokinase activity // inferred from sequence similarity 1372.50988769531 1497.48693847656 1599.78833007813 1467.95092773438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR194C /GEN=XKS1 /DB_XREF=GI:6321633 /SEG=NC_001139:-886076,887878 /DEF=third enzyme in the xylose pathway /NOTE=Xks1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: xylulokinase activity [goid GO:0004856] [evidence IMP,ISS] [pmid 9595677]; go_process: xylulose catabolism [goid GO:0005998] [evidence IDA] [pmid 10981687] --- --- --- --- --- --- S0003426 // XKS1 SGDID:S0003426, Chr VII from 887880-886078, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019492 // cdna:Genscan chromosome:SGD1:VII:886078:887832:-1 // ensembl // 11 // --- /// GENEFINDER00000021673 // cdna:GeneFinder chromosome:SGD1:VII:886078:887832:-1 // ensembl // 11 // --- /// YGR194C // cdna:known chromosome:SGD1:VII:886078:887880:-1 gene:YGR194C // ensembl // 11 // --- --- No cerevisiae_gene -2.49372742308128 1.09105730450591 1.4807136966173 1.16559330058048 1.06953759742986 Max fold change below threshold 4 2.49372742308128 Max fold change at or above threshold -1.19593403658849 0.139473300630548 1.23258622095032 -0.176125484992379 1484.43402099609 93.587212903527 0.0630457208470118 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776839_at SPAC4H3.05.S1 --- 2.49371607776656 --- --- --- --- 7.12862920761108 17.7767772674561 10.0396709442139 6.50742149353027 0.030273400247097 0.0107421996071935 0.0375977009534836 0.0461426004767418 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4H3.05 /GEN=srs2 /DEF=DNA helicase --- --- --- --- --- --- SPAC4H3.05 // |srs2||ATP-dependent DNA helicase, UvrD subfamily|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.27293715061032 2.49371607776656 -1.01392264904097 1.40835925839637 -1.09546142273071 Max fold change below threshold 4 2.49371607776656 Max fold change at or above threshold PAPAPP No 4 0 PPPP 0 4 0 No No 3 < x
1771253_at YOR022C.S1 Hypothetical protein 2.49360096218094 516.185272216797 266.311302185059 --- --- 5739 // mitochondrion // inferred from direct assay 4620 // phospholipase activity // inferred from sequence similarity 214.090347290039 504.524658203125 527.845886230469 318.532257080078 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR022C /GEN=HSP10 /DB_XREF=GI:6324596 /SEG=NC_001147:-373709,375856 /DEF=Hypothetical ORF /NOTE=Yor022cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: phospholipase activity [goid GO:0004620] [evidence ISS] [pmid 9488669]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005548 // YOR022C SGDID:S0005548, Chr XV from 375856-373709, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YOR022C // cdna:known chromosome:SGD1:XV:373709:375856:-1 gene:YOR022C // ensembl // 11 // --- --- No cerevisiae_gene 1.17337688093011 2.3565969441846 2.49360096218094 2.46552865606486 1.48784034923605 Max fold change below threshold 4 2.49360096218094 Max fold change at or above threshold -1.17529505842096 0.751494170352787 0.90621105219637 -0.482410164128193 391.248287200928 150.734863251195 0.385266512805931 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769355_at SPBC56F2.02.S1 --- 2.49259746629097 --- --- --- --- 4.11806535720825 4.81262731552124 4.28325700759888 3.33833050727844 0.274170011281967 0.129638999700546 0.0676269978284836 0.000732421991415322 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC56F2.02 /GEN=rpl1901 /DEF=60S ribosomal protein L19 --- --- --- --- --- --- AB015169 // Schizosaccharomyces pombe mRNA for ribosomal protein L19 homolog, complete cds. // gb // 11 // --- /// SPBC56F2.02 // |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.05087305448135 1.16866219888842 -2.49259746629097 1.04011389719725 -1.23357029755735 Max fold change below threshold 4 2.49259746629097 Max fold change at or above threshold AAAAAP No 3 0 AAAP 3 1 0 No No x = 1
1773611_at YPL184C.S1 Hypothetical protein 2.49185070696947 335.33740234375 839.799133300781 --- --- 5737 // cytoplasm // inferred from direct assay --- 735.659301757813 295.22607421875 375.44873046875 943.93896484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL184C /GEN=UIP4 /DB_XREF=GI:6325072 /SEG=NC_001148:-195949,197787 /DEF=Hypothetical ORF /NOTE=Ypl184cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006105 // YPL184C SGDID:S0006105, Chr XVI from 197787-195949, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017045 // cdna:Genscan chromosome:SGD1:XVI:195949:197667:-1 // ensembl // 11 // --- /// GENEFINDER00000021028 // cdna:GeneFinder chromosome:SGD1:XVI:195949:197787:-1 // ensembl // 11 // --- /// YPL184C // cdna:known chromosome:SGD1:XVI:195949:197787:-1 gene:YPL184C // ensembl // 11 // --- --- No cerevisiae_gene -1.63003004448791 -2.49185070696947 1.0399963760186 -1.95941347528153 1.28311973027224 Max fold change below threshold 4 2.49185070696947 Max fold change at or above threshold 0.485270855502593 -0.95795905139825 -0.69508211689004 1.1677703127857 587.568267822266 305.171910194709 0.519381196887612 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777706_at YLR186W.S1 Protein required for the maturation of the 18S rRNA and for 40S ribosome production; associated with spindle/microtubules; nuclear localization depends on physical interaction with Nop14p; may bind snoRNAs 2.49155757316654 395.116348266602 1007.71258544922 EMG1 6365 // 35S primary transcript processing // inferred from mutant phenotype /// 6365 // 35S primary transcript processing // inferred from physical interaction /// 42274 // ribosomal small subunit biogenesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 5737 // cytoplasm // inferred from direct assay /// 5880 // nuclear microtubule // inferred from direct assay 30515 // snoRNA binding // RCA 971.9716796875 390.106048583984 400.126647949219 1043.45349121094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR186W /GEN=EMG1 /DB_XREF=GI:6323215 /SEG=NC_001144:+523634,524392 /DEF=Essential for Mitotic Growth /NOTE=Emg1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11935223]; go_function: snoRNA binding [goid GO:0030515] [evidence TAS] [pmid 14566057]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP] [pmid 11694595]; go_process: ribosomal small subunit biogenesis [goid GO:0042274] [evidence IMP] [pmid 11694595] --- --- --- --- --- --- S0004176 // EMG1 SGDID:S0004176, Chr XII from 523634-524392, Verified ORF // sgd // 11 // --- /// GENSCAN00000017964 // cdna:Genscan chromosome:SGD1:XII:523634:524392:1 // ensembl // 11 // --- /// GENEFINDER00000024738 // cdna:GeneFinder chromosome:SGD1:XII:523634:524392:1 // ensembl // 11 // --- /// YLR186W // cdna:known chromosome:SGD1:XII:523634:524392:1 gene:YLR186W // ensembl // 11 // --- --- No cerevisiae_gene 1.30673659372711 -2.49155757316654 -1.43976966266078 -2.42916007886297 1.07354310111836 Max fold change below threshold 4 2.49155757316654 Max fold change at or above threshold 0.762330439291372 -0.87715230644152 -0.848917953211125 0.963739820361273 701.41446685791 354.908054151803 0.505989070544361 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771657_at YDR525W-A.S1 Protein of unknown function, has similarity to Pmp3p, which is involved in cation transport; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 2.49085518282262 3662.91516113281 1666.15618896484 SNA2 --- 5737 // cytoplasm // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity --- 1639.27221679688 4083.18969726563 3242.640625 1693.04016113281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR525W-A /GEN=SNA2 /DB_XREF=GI:6320734 /SEG=NC_001136:+1490584,1490823 /DEF=Protein of unknown function, has similarity to Pmp3p, which is involved in cation transport; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Sna2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 12524434]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0007236 // span:5-22,31-53 // numtm:2 S0007236 // SNA2 SGDID:S0007236, Chr IV from 1490586-1490825, Verified ORF // sgd // 11 // --- /// YDR525W-A // cdna:known chromosome:SGD1:IV:1490586:1490825:1 gene:YDR525W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.08022060477279 2.49085518282262 1.27985799004804 1.97809771420155 1.03279988752631 Max fold change below threshold 4 2.49085518282262 Max fold change at or above threshold -0.852243184175945 1.17924637946176 0.480545755697056 -0.807548950982867 2664.53567504883 1203.01749229395 0.451492357020853 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777030_at YDR476C.S1 Hypothetical protein 2.49026680897034 1488.44769287109 741.476470947266 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 703.351623535156 1225.36218261719 1751.533203125 779.601318359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR476C /GEN=PRP3 /DB_XREF=GI:6320684 /SEG=NC_001136:-1410441,1411115 /DEF=Hypothetical ORF /NOTE=Ydr476cp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002884 // YDR476C SGDID:S0002884, Chr IV from 1411117-1410443, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023573 // cdna:GeneFinder chromosome:SGD1:IV:1410443:1411117:-1 // ensembl // 11 // --- /// GENSCAN00000025472 // cdna:Genscan chromosome:SGD1:IV:1410443:1411117:-1 // ensembl // 11 // --- /// YDR476C // cdna:known chromosome:SGD1:IV:1410443:1411117:-1 gene:YDR476C // ensembl // 11 // --- --- No cerevisiae_gene 1.70904308359641 1.74217580739819 -1.02262966129385 2.49026680897034 1.10840906919497 Max fold change below threshold 4 2.49026680897034 Max fold change at or above threshold -0.852540379783378 0.228664121309091 1.31848589946984 -0.69460964099555 1114.96208190918 482.804648477307 0.433023379279937 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776084_at YPL273W.S1 Hypothetical protein /// S-adenosylmethionine-homocysteine methyltransferase, functions along with Mht1p in the conversion of S-adenosylmethionine (AdoMet) to methionine to control the methionine/AdoMet ratio 2.48924847153578 144.687072753906 207.648010253906 SAM4 96 // sulfur amino acid metabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8898 // homocysteine S-methyltransferase activity // inferred from direct assay 199.130111694336 143.160079956055 146.214065551758 216.165908813477 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL273W /GEN=SAM4 /DB_XREF=GI:6324982 /SEG=NC_001148:+25087,26064 /DEF=AdoMet-homocysteine methyltransferase /NOTE=Sam4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: homocysteine S-methyltransferase activity [goid GO:0008898] [evidence IDA] [pmid 11013242]; go_process: sulfur amino acid metabolism [goid GO:0000096] [evidence IMP] [pmid 11013242] --- --- --- --- --- --- S0006194 // SAM4 SGDID:S0006194, Chr XVI from 25087-26064, Verified ORF // sgd // 11 // --- /// GENSCAN00000016973 // cdna:Genscan chromosome:SGD1:XVI:25087:26064:1 // ensembl // 11 // --- /// GENEFINDER00000020818 // cdna:GeneFinder chromosome:SGD1:XVI:25087:26064:1 // ensembl // 11 // --- /// YPL273W // cdna:known chromosome:SGD1:XVI:25087:26064:1 gene:YPL273W // ensembl // 11 // --- --- No cerevisiae_gene 2.48924847153578 -1.39096116567874 -1.21033855131552 -1.36190804176666 1.08555108503776 Max fold change below threshold 4 2.48924847153578 Max fold change at or above threshold 0.6200929288074 -0.89135028587677 -0.808878904978632 1.080136262048 176.167541503906 37.030853157111 0.210202474536377 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771652_at YML096W.S1 Hypothetical protein 2.48896228742332 57.9233493804932 163.104629516602 --- --- 5737 // cytoplasm // inferred from direct assay --- 134.209655761719 53.921932220459 61.9247665405273 191.999603271484 0.000244141003349796 0.00415039015933871 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML096W /GEN=VPS9 /DB_XREF=GI:6323542 /SEG=NC_001145:+79909,81486 /DEF=Hypothetical ORF /NOTE=Yml096wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004562 // YML096W SGDID:S0004562, Chr XIII from 79909-81486, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018638 // cdna:Genscan chromosome:SGD1:XIII:79909:81486:1 // ensembl // 11 // --- /// GENEFINDER00000022054 // cdna:GeneFinder chromosome:SGD1:XIII:79909:81486:1 // ensembl // 11 // --- /// YML096W // cdna:known chromosome:SGD1:XIII:79909:81486:1 gene:YML096W // ensembl // 11 // --- --- No cerevisiae_gene 2.27786279538185 -2.48896228742332 1.10467822188549 -2.1673017640508 1.4305945588026 Max fold change below threshold 4 2.48896228742332 Max fold change at or above threshold 0.363261829651607 -0.867573588382137 -0.744887684593444 1.24919944332397 110.513989448547 65.2302674792372 0.590244436968831 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779327_at YJR154W.S1 Hypothetical protein 2.48892361695957 18.4099712371826 27.5907306671143 --- --- 5737 // cytoplasm // inferred from direct assay --- 24.8786220550537 18.3646678924561 18.4552745819092 30.3028392791748 0.00195312988944352 0.017333984375 0.00585938012227416 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR154W /GEN=PGU1 /DB_XREF=GI:6322614 /SEG=NC_001142:+725699,726739 /DEF=Hypothetical ORF /NOTE=Yjr154wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003915 // YJR154W SGDID:S0003915, Chr X from 725699-726739, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000024460 // cdna:GeneFinder chromosome:SGD1:X:725699:726739:1 // ensembl // 11 // --- /// GENSCAN00000024257 // cdna:Genscan chromosome:SGD1:X:725861:726739:1 // ensembl // 11 // --- /// YJR154W // cdna:known chromosome:SGD1:X:725699:726739:1 gene:YJR154W // ensembl // 11 // --- --- No cerevisiae_gene 2.48892361695957 -1.35470035182469 1.85318152716401 -1.3480494123583 1.21802723688305 Max fold change below threshold 4 2.48892361695957 Max fold change at or above threshold 0.326962529517306 -0.806962667366336 -0.791190187914908 1.27119032576394 23.0003509521484 5.74460659353889 0.249761693005919 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1774900_at YAR028W.S1 Putative integral membrane protein, member of DUP240 gene family 2.48792703011227 1504.46807861328 750.92919921875 --- --- --- --- 688.392639160156 1348.27807617188 1660.65808105469 813.465759277344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR028W /GEN=UIP3 /DB_XREF=GI:6319332 /SEG=NC_001133:+184888,185592 /DEF=Putative integral membrane protein, member of DUP240 gene family /NOTE=Yar028wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000076 // span:50-69,76-98 // numtm:2 S0000076 // YAR028W SGDID:S0000076, Chr I from 184886-185590, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018176 // cdna:GeneFinder chromosome:SGD1:I:184886:185590:1 // ensembl // 11 // --- /// GENSCAN00000020392 // cdna:Genscan chromosome:SGD1:I:184886:185590:1 // ensembl // 11 // --- /// YAR028W // cdna:known chromosome:SGD1:I:184886:185590:1 gene:YAR028W // ensembl // 11 // --- --- No cerevisiae_gene 1.04496443493777 1.95858874641191 2.48792703011227 2.41237047955757 1.18168863669109 Max fold change below threshold 4 2.48792703011227 Max fold change at or above threshold -0.962908005187973 0.483484646309323 1.16818553254689 -0.688762173668242 1127.69863891602 456.228422018468 0.404565906417171 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774272_at SPAC343.13.S1 --- 2.48709724296242 --- --- --- --- 1.35268270969391 0.935246765613556 2.42881512641907 1.20521020889282 0.850341975688934 0.7744140625 0.567627012729645 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC343.13 /DEF=glutamyl-tRNA amidotransferase (predicted) --- --- --- --- --- --- SPAC343.13 // |||glutamyl-tRNA amidotransferase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.48709724296242 -1.44633775750777 -1.15953110374455 1.79555420425879 -1.1223624722998 Max fold change below threshold 0 2.48709724296242 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773645_at YDL217C.S1 Mitochondrial inner membrane protein involved in import of proteins of the ADP/ATP carrier (AAC) family 2.48672008177534 213.194236755371 457.230163574219 TIM22 45039 // mitochondrial inner membrane protein import // inferred from mutant phenotype /// 45039 // mitochondrial inner membrane protein import // inferred from physical interaction 42721 // mitochondrial inner membrane protein insertion complex // inferred from direct assay 8565 // protein transporter activity // traceable author statement 409.365631103516 164.620712280273 261.767761230469 505.094696044922 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL217C /GEN=TIM22 /DB_XREF=GI:6319984 /SEG=NC_001136:-67984,68607 /DEF=Mitochondrial inner membrane protein involved in import of proteins of the ADP/ATP carrier (AAC) family /NOTE=Tim22p; go_component: mitochondrial inner membrane protein insertion complex [goid GO:0042721] [evidence IDA] [pmid 10637294]; go_function: protein transporter activity [goid GO:0008565] [evidence TAS] [pmid 10469659]; go_process: mitochondrial inner membrane protein import [goid GO:0045039] [evidence IMP,IPI] [pmid 10648604] --- --- --- --- --- S0002376 // span:46-68,170-189 // numtm:2 S0002376 // TIM22 SGDID:S0002376, Chr IV from 68607-67984, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023684 // cdna:GeneFinder chromosome:SGD1:IV:67984:68607:-1 // ensembl // 11 // --- /// GENSCAN00000024940 // cdna:Genscan chromosome:SGD1:IV:67984:68607:-1 // ensembl // 11 // --- /// YDL217C // cdna:known chromosome:SGD1:IV:67984:68607:-1 gene:YDL217C // ensembl // 11 // --- --- No cerevisiae_gene -1.26910952630678 -2.48672008177534 1.64102008238649 -1.56385044964761 1.23384734249271 Max fold change below threshold 4 2.48672008177534 Max fold change at or above threshold 0.489470173709815 -1.12603616786464 -0.484790276432552 1.12135627058738 335.212200164795 151.497343294063 0.451944598733534 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772952_at YJR013W.S1 Glycosylphosphatidylinositol-alpha 1,4 mannosyltransferase I, involved in GPI anchor biosynthesis, requires Pbn1p for function; homolog of mammalian PIG-M 2.48581110958198 329.739730834961 791.017028808594 GPI14 6506 // GPI anchor biosynthesis // inferred from sequence similarity 5789 // endoplasmic reticulum membrane // inferred from sequence similarity 30 // mannosyltransferase activity // inferred from sequence similarity 745.259643554688 299.805419921875 359.674041748047 836.7744140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR013W /GEN=SPC1 /DB_XREF=GI:42742257 /SEG=NC_001142:+460296,461507 /DEF=Protein required for cell viability /NOTE=Yjr013wp --- --- --- --- --- S0003774 // span:7-26,77-99,131-149,159-181,194-216,266-283,312-331,361-383 // numtm:8 S0003774 // PMH1 SGDID:S0003774, Chr X from 460296-461507, Uncharacterized ORF // sgd // 11 // --- /// YJR013W // cdna:known chromosome:SGD1:X:460296:461507:1 gene:YJR013W // ensembl // 11 // --- --- No cerevisiae_gene -1.33711123541318 -2.48581110958198 -1.18359028462774 -2.07204178520268 1.12279582196523 Max fold change below threshold 4 2.48581110958198 Max fold change at or above threshold 0.684657225756894 -0.964960733338889 -0.743253656581716 1.02355716416371 560.378379821777 270.03478058458 0.4818793699187 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771465_at SPCC622.18.S1 --- 2.48579771854112 --- --- --- --- 8.63292503356934 5.04493522644043 14.7105760574341 8.98673534393311 0.398925989866257 0.601073980331421 0.274170011281967 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC622.18 /GEN=rpl6 /DEF=60S ribosomal protein L6 --- --- --- --- --- --- AB001833 // Fission yeast mRNA for ribosomal protein YL16 homolog, partial cds. // gb // 11 // --- /// SPCC622.18 // |rpl6||60S ribosomal protein L6|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.24432037990879 -1.71120631803642 2.48579771854112 1.70400831702252 1.04098382749624 Max fold change below threshold 4 2.48579771854112 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777023_at SPBC1921.02.S1 --- 2.48396577566528 --- --- --- --- 0.501855611801147 1.08053624629974 1.24659216403961 1.06939554214478 0.919434010982513 0.870360970497131 0.943848013877869 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1921.02 /GEN=rad60 /DEF=involved in DNA repair (PMID 11971984) --- --- --- --- --- --- SPBC1921.02 // |rad60||DNA repair protein Rad60p |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.30047863710756 2.15308192414493 -1.79202064335315 2.48396577566528 2.13088290137225 Max fold change below threshold 0 2.48396577566528 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779970_at SPAC9.09.S1 --- 2.48389462544742 --- --- --- --- 13.4158811569214 33.3236351013184 11.1898994445801 13.0657405853271 0.030273400247097 0.0107421996071935 0.0676269978284836 0.0676269978284836 P P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9.09 /DEF=homocysteine methyltransferase --- --- --- --- --- --- D89167 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0669. // gb // 10 // --- /// SPAC9.09 // |||homocysteine methylase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.74231428701651 2.48389462544742 1.7122098761755 -1.19892776725706 -1.0267983716122 Max fold change below threshold 4 2.48389462544742 Max fold change at or above threshold PPPPAA No 4 0 PPAA 2 2 0 No No 1 < x = 2
1779509_at YOR284W.S1 Cytoplasmic protein of unknown function; computational analysis of large-scale protein-protein interaction data suggests a possible role in actin patch assembly 2.48232728894145 27.1232967376709 59.4130458831787 HUA2 147 // actin cortical patch assembly // RCA 5737 // cytoplasm // inferred from direct assay --- 59.1235809326172 30.4287910461426 23.8178024291992 59.7025108337402 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR284W /GEN=HUA2 /DB_XREF=GI:6324858 /SEG=NC_001147:+848475,849206 /DEF=Cytoplasmic protein of unknown function; computational analysis of large-scale protein-protein interaction data suggests a possible role in actin patch assembly /NOTE=Hua2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: actin cortical patch assembly [goid GO:0000147] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0005810 // HUA2 SGDID:S0005810, Chr XV from 848475-849206, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017725 // cdna:Genscan chromosome:SGD1:XV:848499:849206:1 // ensembl // 11 // --- /// GENEFINDER00000022742 // cdna:GeneFinder chromosome:SGD1:XV:848499:849206:1 // ensembl // 11 // --- /// YOR284W // cdna:known chromosome:SGD1:XV:848475:849206:1 gene:YOR284W // ensembl // 11 // --- --- No cerevisiae_gene 1.53056360415957 -1.94301445768784 -1.14579671758261 -2.48232728894145 1.00979186125047 Max fold change below threshold 4 2.48232728894145 Max fold change at or above threshold 0.841656843941418 -0.681556170978652 -1.03248900382588 0.872388330863114 43.2681713104248 18.8383302961604 0.435385405151653 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773312_at YPL103C.S1 The authentic, non-tagged protein was localized to the mitochondria 2.48218392564254 124.313243865967 251.564514160156 --- --- 5739 // mitochondrion // inferred from direct assay --- 228.230346679688 91.947395324707 156.679092407227 274.898681640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL103C /GEN=MSD1 /DB_XREF=GI:6325154 /SEG=NC_001148:-357995,359401 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ypl103cp --- --- --- --- --- S0006024 // span:54-76 // numtm:1 S0006024 // FMP30 SGDID:S0006024, Chr XVI from 359403-357997, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017112 // cdna:Genscan chromosome:SGD1:XVI:357997:359376:-1 // ensembl // 11 // --- /// YPL103C // cdna:known chromosome:SGD1:XVI:357997:359403:-1 gene:YPL103C // ensembl // 11 // --- --- No cerevisiae_gene 1.21212098116078 -2.48218392564254 1.99631069877299 -1.4566739133674 1.20447909596542 Max fold change below threshold 4 2.48218392564254 Max fold change at or above threshold 0.501338455169753 -1.19440231217078 -0.388959103092851 1.08202296009388 187.938879013062 80.3677979439724 0.427627313550098 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776127_at YMR102C.S1 Protein of unknown function, transcription is activated by paralogous transcription factors Yrm1p and Yrr1p along with genes involved in multidrug resistance 2.48206569329284 333.521835327148 813.537841796875 --- --- --- --- 798.331115722656 321.639801025391 345.403869628906 828.744567871094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR102C /GEN=SRT1 /DB_XREF=GI:6323749 /SEG=NC_001145:-469847,472351 /DEF=Protein of unknown function, transcription is activated by paralogous transcription factors Yrm1p and Yrr1p along with genes involved in multidrug resistance /NOTE=Ymr102cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004708 // YMR102C SGDID:S0004708, Chr XIII from 472351-469847, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018797 // cdna:Genscan chromosome:SGD1:XIII:469847:472342:-1 // ensembl // 11 // --- /// GENEFINDER00000021978 // cdna:GeneFinder chromosome:SGD1:XIII:469847:471463:-1 // ensembl // 11 // --- /// YMR102C // cdna:known chromosome:SGD1:XIII:469847:472351:-1 gene:YMR102C // ensembl // 11 // --- --- No cerevisiae_gene -1.45239581860888 -2.48206569329284 -1.16750809097308 -2.3112975444669 1.03809628805575 Max fold change below threshold 4 2.48206569329284 Max fold change at or above threshold 0.809846763933216 -0.907434042824742 -0.821823968453628 0.919411247345154 573.529838562012 277.584954552196 0.483993919563406 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776310_at YML077W.S1 Component of the TRAPP (transport protein particle) complex, which plays an essential role in the vesicular transport from endoplasmic reticulum to Golgi 2.48067367275082 352.69287109375 883.467926025391 BET5 6888 // ER to Golgi transport // inferred from mutant phenotype 30008 // TRAPP complex // inferred from direct assay --- 854.483520507813 360.929504394531 344.456237792969 912.452331542969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML077W /GEN=BET5 /DB_XREF=GI:6323563 /SEG=NC_001145:+111865,112344 /DEF=Bet5p/18kD component of TRAPP /NOTE=Bet5p; go_component: TRAPP [goid GO:0030008] [evidence IDA] [pmid 10727015]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 10727015] --- --- --- --- --- --- S0004542 // BET5 SGDID:S0004542, Chr XIII from 111865-112344, Verified ORF // sgd // 11 // --- /// YML077W // cdna:known chromosome:SGD1:XIII:111865:112344:1 gene:YML077W // ensembl // 11 // --- --- No cerevisiae_gene -1.49798470863099 -2.36745267456378 -1.27324739129426 -2.48067367275082 1.0678407595277 Max fold change below threshold 4 2.48067367275082 Max fold change at or above threshold 0.768967832060922 -0.836455813142395 -0.890039759078348 0.957527740159821 618.08039855957 307.429143446293 0.497393452636183 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774219_at YIR035C.S1 Hypothetical protein 2.48014189274376 1016.79373168945 1589.26440429688 --- --- 5737 // cytoplasm // inferred from direct assay --- 1584.88696289063 762.359558105469 1271.22790527344 1593.64184570313 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR035C /GEN=LYS1 /DB_XREF=GI:6322226 /SEG=NC_001141:-421023,421787 /DEF=Hypothetical ORF /NOTE=Yir035cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001474 // YIR035C SGDID:S0001474, Chr IX from 421787-421023, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016503 // cdna:Genscan chromosome:SGD1:IX:421023:421787:-1 // ensembl // 11 // --- /// GENEFINDER00000019146 // cdna:GeneFinder chromosome:SGD1:IX:421023:421787:-1 // ensembl // 11 // --- /// YIR035C // cdna:known chromosome:SGD1:IX:421023:421787:-1 gene:YIR035C // ensembl // 11 // --- --- No cerevisiae_gene -2.48014189274376 -2.07892318793669 -1.20018125579539 -1.24673707705443 1.00552397932313 Max fold change below threshold 4 2.48014189274376 Max fold change at or above threshold 0.721973636087962 -1.38491466459552 -0.0814580733633115 0.744399101870867 1303.02906799316 390.399151449238 0.299608935087307 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775139_at SPAC1F3.08c.S1 --- 2.47923372888223 --- --- --- --- 3.21991348266602 4.37263250350952 3.11852765083313 1.29875349998474 0.389892578125 0.303710997104645 0.129638999700546 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F3.08c /DEF=sequence orphan --- --- --- --- --- --- SPAC1F3.08c // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.44523570614071 1.35799689247833 1.96114664943293 -1.03251080098834 -2.47923372888223 Max fold change below threshold 3 2.47923372888223 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1779854_at YKL057C.S1 Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), required for even distribution of NPCs around the nuclear envelope, involved in establishment of a normal nucleocytoplasmic concentration gradient of the GTPase Gsp1p 2.47920475271406 358.143692016602 884.706268310547 NUP120 6259 // DNA metabolism // inferred from genetic interaction /// 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6999 // nuclear pore organization and biogenesis // inferred from mutant phenotype 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement 855.203979492188 371.336456298828 344.950927734375 914.208557128906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL057C /GEN=NUP120 /DB_XREF=GI:6322793 /SEG=NC_001143:-330501,333614 /DEF=Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), required for even distribution of NPCs around the nuclear envelope, involved in establishment of a normal nucleocytoplasmic concentration gradient of the GTPase Gsp1p /NOTE=Nup120p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence IMP] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0001540 // NUP120 SGDID:S0001540, Chr XI from 333614-330501, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018374 // cdna:Genscan chromosome:SGD1:XI:330501:333614:-1 // ensembl // 11 // --- /// YKL057C // cdna:known chromosome:SGD1:XI:330501:333614:-1 gene:YKL057C // ensembl // 11 // --- --- No cerevisiae_gene -1.22063979899205 -2.30304341247866 -1.38949513560846 -2.47920475271406 1.06899474166591 Max fold change below threshold 4 2.47920475271406 Max fold change at or above threshold 0.766101534132119 -0.819548386946017 -0.906014639133624 0.959461491947522 621.424980163574 305.154067591642 0.49105536039333 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779496_at SPBC336.11.S1 --- 2.47876977251238 --- --- --- --- 2.25496339797974 1.30786681175232 3.74309778213501 3.14397764205933 0.366210997104645 0.805419981479645 0.334473013877869 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC336.11 /DEF=GARP complex (predicted) --- --- --- --- --- --- SPBC336.11 // |||GARP complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.14560019908843 -1.724153696475 -2.47876977251238 1.6599372679346 1.39424774915463 Max fold change below threshold 2 2.47876977251238 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769880_at YLR137W.S1 Hypothetical protein 2.47832715344254 129.929012298584 70.5470161437988 --- --- --- --- 61.3592758178711 107.789665222168 152.068359375 79.7347564697266 0.00195312988944352 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR137W /GEN=TIS11 /DB_XREF=GI:6323166 /SEG=NC_001144:+417007,418110 /DEF=Hypothetical ORF /NOTE=Ylr137wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004127 // YLR137W SGDID:S0004127, Chr XII from 417007-418110, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017926 // cdna:Genscan chromosome:SGD1:XII:417007:418110:1 // ensembl // 11 // --- /// GENEFINDER00000024551 // cdna:GeneFinder chromosome:SGD1:XII:417007:418110:1 // ensembl // 11 // --- /// YLR137W // cdna:known chromosome:SGD1:XII:417007:418110:1 gene:YLR137W // ensembl // 11 // --- --- No cerevisiae_gene 2.00475425313302 1.75669715434897 -1.25677444660006 2.47832715344254 1.29947355810388 Max fold change below threshold 4 2.47832715344254 Max fold change at or above threshold -0.98483989862005 0.191291371882083 1.31291790739691 -0.519369380658939 100.238014221191 39.4772170154732 0.393834787352833 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769634_at YHR079C.S1 Serine-threonine kinase and endoribonuclease; transmembrane protein that initiates the unfolded protein response signal by regulating synthesis of Hac1p through HAC1 mRNA splicing 2.4770027957608 188.85319519043 358.741561889648 IRE1 6020 // myo-inositol metabolism // traceable author statement /// 6468 // protein amino acid phosphorylation // inferred from direct assay /// 6987 // unfolded protein response, activation of signaling protein activity // traceable author statement /// 30969 // UFP-specific transcription factor mRNA processing during unfolded protein response // traceable author statement 5635 // nuclear membrane // traceable author statement /// 5789 // endoplasmic reticulum membrane // traceable author statement 4521 // endoribonuclease activity // traceable author statement /// 4674 // protein serine/threonine kinase activity // inferred from direct assay 349.832763671875 174.64697265625 203.059417724609 367.650360107422 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR079C /GEN=IRE1 /DB_XREF=GI:6321870 /SEG=NC_001140:-258245,261592 /DEF=Serine-threonine kinase and endoribonuclease; transmembrane protein that initiates the unfolded protein response signal by regulating synthesis of Hac1p through HAC1 mRNA splicing /NOTE=Ire1p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence TAS] [pmid 10346810]; go_component: nuclear membrane [goid GO:0005635] [evidence TAS] [pmid 10346810]; go_function: endoribonuclease activity [goid GO:0004521] [evidence TAS] [pmid 10346810]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence IDA] [pmid 8663458]; go_process: myo-inositol metabolism [goid GO:0006020] [evidence TAS] [pmid 10346810]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 8663458]; go_process: unfolded protein response, activation of signaling protein kinase/endonuclease [goid GO:0006987] [evidence TAS] [pmid 10346810]; go_process: unfolded protein response, cleavage of primary transcript encoding UFP-specific transcription factor [goid GO:0006988] [evidence TAS] [pmid 10346810] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 9.0E-41 /// hanks // 2.1.11 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; CMKI // 6.0E-44 --- S0001121 // span:7-29 // numtm:1 S0001121 // IRE1 SGDID:S0001121, Chr VIII from 261592-258245, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016623 // cdna:Genscan chromosome:SGD1:VIII:258245:261592:-1 // ensembl // 11 // --- /// YHR079C // cdna:known chromosome:SGD1:VIII:258245:261592:-1 gene:YHR079C // ensembl // 11 // --- --- No cerevisiae_gene -2.4770027957608 -2.00308518579612 1.11594503163132 -1.72280984350266 1.05093175450044 Max fold change below threshold 4 2.4770027957608 Max fold change at or above threshold 0.767754538114224 -1.00115458008345 -0.714264685301804 0.947664727271026 273.797378540039 99.0360608204229 0.361712962149271 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774982_at YGR187C.S1 Protein of unknown function with similarity to human HMG1 and HMG2; localizes to the cytoplasm 2.47671678203286 157.540348052979 319.718597412109 HGH1 --- 5737 // cytoplasm // inferred from direct assay --- 311.225921630859 125.660682678223 189.420013427734 328.211273193359 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR187C /GEN=HGH1 /DB_XREF=GI:6321626 /SEG=NC_001139:-870235,871419 /DEF=Protein of unknown function with similarity to human HMG1 and HMG2; localizes to the cytoplasm /NOTE=Hgh1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003419 // HGH1 SGDID:S0003419, Chr VII from 871421-870237, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021460 // cdna:GeneFinder chromosome:SGD1:VII:870237:871421:-1 // ensembl // 11 // --- /// YGR187C // cdna:known chromosome:SGD1:VII:870237:871421:-1 gene:YGR187C // ensembl // 11 // --- --- No cerevisiae_gene 1.73330328896592 -2.47671678203286 -1.12848550195178 -1.64304666650019 1.05457563262563 Max fold change below threshold 4 2.47671678203286 Max fold change at or above threshold 0.745102835112529 -1.15946946477516 -0.50506750948281 0.919434139145438 238.629472732544 97.4314490258939 0.40829595736942 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771988_at YGL175C.S1 Protein with a role in accurate meiotic and mitotic double-strand break repair; phosphorylated in response to DNA damage and required for normal resistance to DNA-damaging agents 2.47638608654222 37.0417938232422 81.6021842956543 SAE2 706 // meiotic DNA double-strand break processing // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 75.8986206054688 43.434642791748 30.6489448547363 87.3057479858398 0.000244141003349796 0.00292969006113708 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL175C /GEN=SAE2 /DB_XREF=GI:6321263 /SEG=NC_001139:-173289,174326 /DEF=Involved in meiotic recombination and chromosome metabolism /NOTE=Sae2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiotic DNA double-strand break processing [goid GO:0000706] [evidence TAS] [pmid 9334324] --- --- --- --- --- --- S0003143 // SAE2 SGDID:S0003143, Chr VII from 174328-173291, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019217 // cdna:Genscan chromosome:SGD1:VII:173291:174328:-1 // ensembl // 11 // --- /// GENEFINDER00000021554 // cdna:GeneFinder chromosome:SGD1:VII:173291:174328:-1 // ensembl // 11 // --- /// YGL175C // cdna:known chromosome:SGD1:VII:173291:174328:-1 gene:YGL175C // ensembl // 11 // --- --- No cerevisiae_gene -1.31237044572147 -1.74742131457999 -1.0390018497609 -2.47638608654222 1.15029426476229 Max fold change below threshold 4 2.47638608654222 Max fold change at or above threshold 0.621755813452863 -0.595902121299947 -1.07546770730694 1.04961401515402 59.3219890594482 26.660999684046 0.44942862009108 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773191_at YDL170W.S1 Transcriptional activator necessary for gamma-aminobutyrate (GABA)-dependent induction of GABA genes (such as UGA1, UGA2, UGA4); zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type; localized to the nucleus 2.47598839214059 1181.71612548828 518.748565673828 UGA3 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 19740 // nitrogen utilization // inferred from mutant phenotype /// 45893 // positive regulation of transcription, DNA-dependent // inferred from direct assay 5634 // nucleus // inferred from curator 3700 // transcription factor activity // inferred from direct assay /// 3704 // specific RNA polymerase II transcription factor activity // inferred from physical interaction 500.044250488281 1162.34411621094 1201.08813476563 537.452880859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL170W /GEN=UGA3 /DB_XREF=GI:6320031 /SEG=NC_001136:+156319,157905 /DEF=Transcriptional activator necessary for gamma-aminobutyrate (GABA)-dependent induction of GABA genes (such as UGA1, UGA2, UGA4) /NOTE=Uga3p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 9651335]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IPI] [pmid 9651335]; go_process: nitrogen utilization [goid GO:0019740] [evidence IMP] [pmid 7899074]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP] [pmid 7899074] --- --- --- --- --- --- S0002329 // UGA3 SGDID:S0002329, Chr IV from 156319-157905, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023849 // cdna:GeneFinder chromosome:SGD1:IV:156319:157905:1 // ensembl // 11 // --- /// GENSCAN00000024974 // cdna:Genscan chromosome:SGD1:IV:156319:157905:1 // ensembl // 11 // --- /// YDL170W // cdna:known chromosome:SGD1:IV:156319:157905:1 gene:YDL170W // ensembl // 11 // --- --- No cerevisiae_gene 2.47598839214059 2.32448251344943 1.01295887509955 2.40196369339872 1.0748106399275 Max fold change below threshold 4 2.47598839214059 Max fold change at or above threshold -0.91338612754765 0.814072681317578 0.915127655970343 -0.815814209740271 850.232345581055 383.395460617508 0.450930222321162 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775712_at YNL003C.S1 S-adenosylmethionine transporter of the mitochondrial inner membrane, member of the mitochondrial carrier family; required for biotin biosynthesis and respiratory growth 2.475348243022 1828.44549560547 788.391448974609 PET8 15805 // S-adenosylmethionine transport // inferred from direct assay /// 15805 // S-adenosylmethionine transport // inferred from mutant phenotype /// 15805 // S-adenosylmethionine transport // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay /// 5743 // mitochondrial inner membrane // inferred from sequence similarity 95 // S-adenosylmethionine transporter activity // inferred from direct assay /// 95 // S-adenosylmethionine transporter activity // inferred from mutant phenotype /// 95 // S-adenosylmethionine transporter activity // inferred from genetic interaction 755.926574707031 1785.70947265625 1871.18151855469 820.856323242188 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL003C /GEN=PET8 /DB_XREF=GI:6324325 /SEG=NC_001146:-624974,625828 /DEF=S-adenosylmethionine transporter of the mitochondrial inner membrane, member of the mitochondrial carrier family; required for biotin biosynthesis and respiratory growth /NOTE=Pet8p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence ISS] [pmid 10930523]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14609944]; go_function: S-adenosylmethionine transporter activity [goid GO:0000095] [evidence IDA,IGI,IMP] [pmid 14609944]; go_process: S-adenosylmethionine transport [goid GO:0015805] [evidence IDA,IGI,IMP] [pmid 14609944] --- --- --- --- --- S0004948 // span:5-27,47-69 // numtm:2 S0004948 // PET8 SGDID:S0004948, Chr XIV from 625829-624975, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020036 // cdna:Genscan chromosome:SGD1:XIV:624975:625829:-1 // ensembl // 11 // --- /// YNL003C // cdna:known chromosome:SGD1:XIV:624975:625829:-1 gene:YNL003C // ensembl // 11 // --- --- No cerevisiae_gene 1.41634032697836 2.36227899958184 1.40053133196088 2.475348243022 1.08589425310298 Max fold change below threshold 4 2.475348243022 Max fold change at or above threshold -0.917650448053113 0.792747010868097 0.934710108531322 -0.809806671346306 1308.41847229004 602.072280087886 0.460152690319419 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777156_at YNL316C.S1 Prephenate dehydratase, catalyzes the conversion of prephanate to phenylpyruvate, which is a step in the phenylalanine biosynthesis pathway 2.47530308545626 34.6812152862549 76.7897453308105 PHA2 19274 // phenylalanine biosynthesis, prephenate pathway // traceable author statement 5737 // cytoplasm // inferred from direct assay 4664 // prephenate dehydratase activity // traceable author statement 71.2577743530273 28.7874946594238 40.5749359130859 82.3217163085938 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL316C /GEN=PHA2 /DB_XREF=GI:37362685 /SEG=NC_001146:-42070,43074 /DEF=prephenate dehydratase /NOTE=Pha2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: prephenate dehydratase activity [goid GO:0004664] [evidence TAS] [pmid 7502583]; go_process: phenylalanine biosynthesis, prephenate pathway [goid GO:0019274] [evidence TAS] [pmid 7502583] --- --- --- --- --- --- S0005260 // PHA2 SGDID:S0005260, Chr XIV from 43074-42070, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019789 // cdna:Genscan chromosome:SGD1:XIV:42070:43074:-1 // ensembl // 11 // --- /// GENEFINDER00000020461 // cdna:GeneFinder chromosome:SGD1:XIV:42070:43074:-1 // ensembl // 11 // --- /// YNL316C // cdna:known chromosome:SGD1:XIV:42070:43074:-1 gene:YNL316C // ensembl // 11 // --- --- No cerevisiae_gene -1.15954478312181 -2.47530308545626 1.21678146626639 -1.75620177209068 1.15526645416615 Max fold change below threshold 4 2.47530308545626 Max fold change at or above threshold 0.616176646503525 -1.06973359605839 -0.601816547088762 1.05537349664363 55.7354803085327 25.1913053384535 0.451979694065665 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778810_at SPCC830.08c.S1 --- 2.47506587846879 --- --- --- --- 9.55914402008057 9.3002233505249 8.7652416229248 5.38679933547974 0.171387001872063 0.171387001872063 0.149657994508743 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC830.08c /DEF=hypothetical protein --- --- --- --- --- --- SPCC830.08c // |||Golgi membrane protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.91654552209312 -1.02784026359335 -2.47506587846879 -1.09057393182173 -1.77454986249813 Max fold change below threshold 4 2.47506587846879 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776339_at YLR143W.S1 Hypothetical protein 2.47493933441822 69.5041618347168 171.46314239502 --- --- 5737 // cytoplasm // inferred from direct assay --- 170.846267700195 69.0304870605469 69.9778366088867 172.080017089844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR143W /GEN=PUT1 /DB_XREF=GI:6323172 /SEG=NC_001144:+427330,429387 /DEF=Hypothetical ORF /NOTE=Ylr143wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004133 // YLR143W SGDID:S0004133, Chr XII from 427330-429387, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017931 // cdna:Genscan chromosome:SGD1:XII:427330:429387:1 // ensembl // 11 // --- /// GENEFINDER00000024795 // cdna:GeneFinder chromosome:SGD1:XII:427903:429387:1 // ensembl // 11 // --- /// YLR143W // cdna:known chromosome:SGD1:XII:427330:429387:1 gene:YLR143W // ensembl // 11 // --- --- No cerevisiae_gene -1.15874931941499 -2.47493933441822 1.23991502405958 -2.44143397366044 1.00722140089015 Max fold change below threshold 4 2.47493933441822 Max fold change at or above threshold 0.855496329759657 -0.874021202967744 -0.857928828650308 0.876453701858396 120.483652114868 58.869470076483 0.488609608383694 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771467_at SPCC584.12.S1 --- 2.47490832709571 --- --- --- --- 13.0087413787842 11.2066774368286 12.32408618927 8.92242240905762 0.018554700538516 0.00585938012227416 0.00122069998178631 0.014160200022161 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC584.12 /DEF=sequence orphan --- --- --- --- --- --- SPCC584.12 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.47490832709571 -1.16080269572437 -1.21634883497381 -1.05555423574612 -1.45798313309829 Max fold change below threshold 4 2.47490832709571 Max fold change at or above threshold PAPPPP No 3 0 PPPP 0 4 0 No No 3 < x
1772922_at SPCC13B11.02c.S1 --- 2.47454131562613 --- --- --- --- 7.49250841140747 18.5405216217041 13.3054628372192 7.16355466842651 0.0952147990465164 0.0676269978284836 0.0561522990465164 0.00585938012227416 A A M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC13B11.02c /DEF=dubious --- --- --- --- --- --- SPCC13B11.02c // |||dubious|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.11581768367047 2.47454131562613 1.06279523060277 1.77583555554792 -1.04592046242501 Max fold change below threshold 4 2.47454131562613 Max fold change at or above threshold AAAPMP No 4 0 AAMP 2 1 1 No No x = 1
1776642_at SPAC2F3.02.S1 --- 2.47428825497243 --- --- --- --- 2.24733901023865 5.56056451797485 5.44200897216797 2.63715529441834 0.366210997104645 0.334473013877869 0.0805663987994194 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F3.02 /DEF=TPR repeat protein --- --- --- --- --- --- SPAC2F3.02 // |||ER protein translocation subcomplex subunit|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.71603930947336 2.47428825497243 -2.09182085837236 2.42153451142651 1.1734568226706 Max fold change below threshold 3 2.47428825497243 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776602_at SPCC285.04.S1 --- 2.47376461763807 --- --- --- --- 1.43265414237976 0.898956954479218 1.2321902513504 3.41539883613586 0.780517995357513 0.888427972793579 0.753906011581421 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC285.04 /DEF=transthyretin (predicted) --- --- --- --- --- --- SPCC285.04 // |||transthyretin |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.39602544261293 -1.5936849203305 -2.47376461763807 -1.16268907403679 2.38396604951883 Max fold change below threshold 1 2.47376461763807 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779660_at YLR174W.S1 Cytosolic NADP-specific isocitrate dehydrogenase, catalyzes oxidation of isocitrate to alpha-ketoglutarate; levels are elevated during growth on non-fermentable carbon sources and reduced during growth on glucose 2.47359185445013 4897.81396484375 2141.65692138672 IDP2 6102 // isocitrate metabolism // traceable author statement /// 6537 // glutamate biosynthesis // traceable author statement 5829 // cytosol // inferred from direct assay 4450 // isocitrate dehydrogenase (NADP+) activity // traceable author statement 2238.18530273438 5536.35693359375 4259.27099609375 2045.12854003906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR174W /GEN=IDP2 /DB_XREF=GI:6323203 /SEG=NC_001144:+504593,505831 /DEF=Cytosolic NADP-specific isocitrate dehydrogenase, catalyzes oxidation of isocitrate to alpha-ketoglutarate; levels are elevated during growth on non-fermentable carbon sources and reduced during growth on glucose /NOTE=Idp2p; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 9175438]; go_function: isocitrate dehydrogenase (NADP+) activity [goid GO:0004450] [evidence TAS] [pmid 9175438]; go_process: glutamate biosynthesis [goid GO:0006537] [evidence TAS] [pmid 9175438]; go_process: isocitrate metabolism [goid GO:0006102] [evidence TAS] [pmid 9175438] --- --- --- --- --- --- S0004164 // IDP2 SGDID:S0004164, Chr XII from 504593-505831, Verified ORF // sgd // 11 // --- /// GENSCAN00000017955 // cdna:Genscan chromosome:SGD1:XII:504593:505831:1 // ensembl // 11 // --- /// GENEFINDER00000024714 // cdna:GeneFinder chromosome:SGD1:XII:504629:505831:1 // ensembl // 11 // --- /// YLR174W // cdna:known chromosome:SGD1:XII:504593:505831:1 gene:YLR174W // ensembl // 11 // --- --- No cerevisiae_gene -1.66266706276402 2.47359185445013 -1.10470312451706 1.9030019502363 -1.094398351456 Max fold change below threshold 4 2.47359185445013 Max fold change at or above threshold -0.764485532741757 1.20297903758083 0.441156544239644 -0.879650049078717 3519.73544311523 1676.35630171404 0.476273381567092 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775115_at SPAC30C2.02.S1 --- 2.47357717137551 --- --- --- --- 11.7639427185059 11.3122186660767 21.6769008636475 6.47888898849487 0.171387001872063 0.0676269978284836 0.0461426004767418 0.0952147990465164 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30C2.02 /GEN=mmd1 /DEF=HEAT repeat --- --- --- --- --- --- SPAC30C2.02 // |mmd1||mitochondrial morphology and distribution 1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.47357717137551 -1.03993240104029 1.1264575544766 1.84265610453437 -1.81573457106552 Max fold change below threshold 4 2.47357717137551 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1777579_at YPL075W.S1 Transcriptional activator of genes involved in glycolysis; DNA-binding protein that interacts and functions with the transcriptional activator Gcr2p 2.47356969904111 245.372039794922 506.610260009766 GCR1 45821 // positive regulation of glycolysis // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 5634 // nucleus // inferred from curator 3677 // DNA binding // inferred from direct assay /// 16563 // transcriptional activator activity // inferred from mutant phenotype 512.624145507813 207.240631103516 283.503448486328 500.596374511719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL075W /GEN=GCR1 /DB_XREF=GI:6325182 /SEG=NC_001148:+412249,415357 /DEF=Transcriptional activator of genes involved in glycolysis, functions and interacts with Gcr2p /NOTE=Gcr1p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 1946357]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 1946357]; go_function: transcriptional activator activity [goid GO:0016563] [evidence IDA] [pmid 1946357]; go_process: positive regulation of glycolysis [goid GO:0045821] [evidence IMP] [pmid 3547083]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IMP] [pmid 10455229] --- --- --- --- --- --- S0005996 // GCR1 SGDID:S0005996, Chr XVI from 412251-412258,413010-415359, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000017131 // cdna:Genscan chromosome:SGD1:XVI:412825:415359:1 // ensembl // 11 // --- /// GENEFINDER00000020803 // cdna:GeneFinder chromosome:SGD1:XVI:412846:415359:1 // ensembl // 11 // --- /// YPL075W // cdna:known chromosome:SGD1:XVI:412251:415359:1 gene:YPL075W // ensembl // 11 // --- --- No cerevisiae_gene 1.87963817358457 -2.47356969904111 -1.20018362500773 -1.80817604951473 -1.02402688394982 Max fold change below threshold 4 2.47356969904111 Max fold change at or above threshold 0.886742863540547 -1.09518434841105 -0.600241609521135 0.808683094391643 375.991149902344 154.084122041791 0.409807842769201 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777672_at YOR051C.S1 Nuclear protein that inhibits replication of Brome mosaic virus in S. cerevisiae, which is a model system for studying replication of positive-strand RNA viruses in their natural hosts 2.47304735626007 423.238265991211 354.624313354492 --- --- 5634 // nucleus // inferred from direct assay --- 297.094299316406 412.576477050781 433.900054931641 412.154327392578 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR051C /GEN=RSB1 /DB_XREF=GI:6324625 /SEG=NC_001147:-424847,426085 /DEF=Hypothetical ORF /NOTE=Yor051cp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10684247]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005577 // YOR051C SGDID:S0005577, Chr XV from 426085-424847, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017501 // cdna:Genscan chromosome:SGD1:XV:424847:426085:-1 // ensembl // 11 // --- /// GENEFINDER00000022763 // cdna:GeneFinder chromosome:SGD1:XV:424847:426085:-1 // ensembl // 11 // --- /// YOR051C // cdna:known chromosome:SGD1:XV:424847:426085:-1 gene:YOR051C // ensembl // 11 // --- --- No cerevisiae_gene 2.47304735626007 1.38870546489815 -1.54994957386754 1.46047923480866 1.38728453673099 Max fold change below threshold 4 2.47304735626007 Max fold change at or above threshold -1.47979073775726 0.381000391439108 0.724592150287799 0.374198196030354 388.931289672852 62.0607954984442 0.159567504971499 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771202_at YKL034W.S1 Golgi-localized RING-finger ubiquitin ligase (E3), involved in ubiquitinating and sorting membrane proteins that contain polar transmembrane domains to multivesicular bodies for delivery to the vacuole for quality control purposes 2.47290270860997 983.410278320313 2161.03186035156 TUL1 16567 // protein ubiquitination // inferred from mutant phenotype /// 43162 // ubiquitin-dependent protein catabolism via the multivesicular body pathway // inferred from mutant phenotype 5794 // Golgi apparatus // inferred from direct assay 4842 // ubiquitin-protein ligase activity // inferred from sequence similarity /// 4842 // ubiquitin-protein ligase activity // inferred from physical interaction 2218.48095703125 920.139038085938 1046.68151855469 2103.58276367188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL034W /GEN=TUL1 /DB_XREF=GI:6322817 /SEG=NC_001143:+371472,373748 /DEF=Transmembrane Ubiquitin Ligase /NOTE=Tul1p; go_component: intracellular [goid GO:0005622] [evidence IDA,IMP] [pmid 12499386]; go_function: ligase activity [goid GO:0016874] [evidence TAS] [pmid 12499386]; go_process: protein transport [goid GO:0015031] [evidence IDA,IMP] [pmid 12499386] --- --- --- --- --- S0001517 // span:7-29,399-416,429-451,461-483,522-544,559-578,603-625,635-654 // numtm:8 S0001517 // TUL1 SGDID:S0001517, Chr XI from 371472-373748, Verified ORF // sgd // 11 // --- /// GENSCAN00000018392 // cdna:Genscan chromosome:SGD1:XI:371472:373748:1 // ensembl // 11 // --- /// GENEFINDER00000023038 // cdna:GeneFinder chromosome:SGD1:XI:371472:373748:1 // ensembl // 11 // --- /// YKL034W // cdna:known chromosome:SGD1:XI:371472:373748:1 gene:YKL034W // ensembl // 11 // --- --- No cerevisiae_gene -2.47290270860997 -2.41102796990997 -1.07463416260969 -2.11953771773351 -1.0546202390244 Max fold change below threshold 4 2.47290270860997 Max fold change at or above threshold 0.945554985910498 -0.95407347355245 -0.768926792449568 0.777445280091519 1572.22106933594 683.471503323535 0.434717176008979 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776287_at SPBC56F2.14.S1 --- 2.47240453958511 --- --- --- --- 0.247240453958511 0.304069578647614 0.13360321521759 0.0958211645483971 0.932372987270355 0.919434010982513 0.991943001747131 0.994140982627869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC56F2.14 /DEF=ribosomal protein, mitochondrial L44 (predicted) --- --- --- --- --- --- SPBC56F2.14 // |mrpl44||mitochondrial ribosomal protein subunit l44|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.21859282707813 1.2298536658513 -2.47240453958511 -1.85055766476763 -2.47240453958511 Max fold change below threshold 0 2.47240453958511 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775445_at YOL033W.S1 Mitochondrial glutamyl-tRNA synthetase, encoded by a nuclear gene 2.47038871576793 171.987121582031 431.274490356445 MSE1 6412 // protein biosynthesis // inferred from mutant phenotype /// 6412 // protein biosynthesis // inferred from sequence similarity /// 6424 // glutamyl-tRNA aminoacylation // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 4818 // glutamate-tRNA ligase activity // inferred from sequence similarity /// 4818 // glutamate-tRNA ligase activity // inferred from mutant phenotype 406.687591552734 179.349304199219 164.624938964844 455.861389160156 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL033W /GEN=MSE1 /DB_XREF=GI:6324540 /SEG=NC_001147:+263475,265085 /DEF=Mitochondrial glutamyl-tRNA synthetase /NOTE=Mse1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 7607232]; go_function: glutamate-tRNA ligase activity [goid GO:0004818] [evidence IMP,ISS] [pmid 7607232]; go_process: glutamyl-tRNA aminoacylation [goid GO:0006424] [evidence IMP] [pmid 7607232]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP,ISS] [pmid 7607232] --- --- --- --- --- --- S0005393 // MSE1 SGDID:S0005393, Chr XV from 263475-265085, Verified ORF // sgd // 11 // --- /// GENSCAN00000017440 // cdna:Genscan chromosome:SGD1:XV:263481:265085:1 // ensembl // 11 // --- /// YOL033W // cdna:known chromosome:SGD1:XV:263475:265085:1 gene:YOL033W // ensembl // 11 // --- --- No cerevisiae_gene -2.18252225089196 -2.26757273114922 1.20833996493711 -2.47038871576793 1.12091295291227 Max fold change below threshold 4 2.47038871576793 Max fold change at or above threshold 0.695007232693538 -0.808958009544718 -0.906367617861533 1.02031839471271 301.630805969238 151.159269488956 0.501140024485337 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779454_at YJL094C.S1 Putative K+/H+ antiporter 2.47008640745303 718.101623535156 1113.00970458984 KHA1 15672 // monovalent inorganic cation transport // inferred from sequence similarity /// 15672 // monovalent inorganic cation transport // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 16020 // membrane // inferred from sequence similarity 15386 // potassium:hydrogen antiporter activity // inferred from sequence similarity /// 15386 // potassium:hydrogen antiporter activity // inferred from mutant phenotype 1123.78747558594 674.0302734375 762.172973632813 1102.23193359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL094C /GEN=KHA1 /DB_XREF=GI:6322367 /SEG=NC_001142:-251737,254358 /DEF=putative K+/H+ antiporter /NOTE=Kha1p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 9811642]; go_function: potassium:hydrogen antiporter activity [goid GO:0015386] [evidence IMP,ISS] [pmid 9811642]; go_process: monovalent inorganic cation transport [goid GO:0015672] [evidence IMP,ISS] [pmid 9811642] --- --- --- --- scop // a.4.3.ARID domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; ARID-like; ARID domain // 8.10000038146973 S0003630 // span:23-45,52-73,83-105,118-140,155-177,190-212,223-245,266-297,317-336,343-362,377-399,406-428 // numtm:12 S0003630 // KHA1 SGDID:S0003630, Chr X from 254358-251737, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024066 // cdna:Genscan chromosome:SGD1:X:251737:253563:-1 // ensembl // 11 // --- /// GENEFINDER00000024443 // cdna:GeneFinder chromosome:SGD1:X:251737:254220:-1 // ensembl // 11 // --- /// YJL094C // cdna:known chromosome:SGD1:X:251737:254358:-1 gene:YJL094C // ensembl // 11 // --- --- No cerevisiae_gene -2.47008640745303 -1.66726558119521 1.10315012914853 -1.47445201347081 -1.01955626700263 Max fold change below threshold 4 2.47008640745303 Max fold change at or above threshold 0.901475042302445 -1.04560926660469 -0.664022784664688 0.808157008966928 915.5556640625 230.990101502528 0.252294983876327 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769545_at SPBC16D10.06.S1 --- 2.470005271311 --- --- --- --- 1.276087641716 1.06603837013245 1.04109823703766 2.97232508659363 0.725830018520355 0.753906011581421 0.828612983226776 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16D10.06 /DEF=ZIP zinc transporter domain --- --- --- --- --- --- SPBC16D10.06 // |||ZIP zinc transporter domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.470005271311 -1.19703725256855 1.1615266484994 -1.2257129983689 2.32924839127556 Max fold change below threshold 1 2.470005271311 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769738_at SPAC3F10.17.S1 --- 2.46946103178775 --- --- --- --- 0.964034259319305 1.03637945652008 0.91420304775238 2.38064503669739 0.870360970497131 0.753906011581421 0.870360970497131 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3F10.17 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC3F10.17 // |||low temperature viability protein family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.5207626393128 1.07504421808812 1.81877530286461 -1.05450781605841 2.46946103178775 Max fold change below threshold 0 2.46946103178775 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773668_at YOR115C.S1 One of 10 subunits of the transport protein particle (TRAPP) complex of the cis-Golgi which mediates vesicle docking and fusion; involved in endoplasmic reticulum (ER) to Golgi membrane traffic 2.46919786783355 135.5719871521 323.725509643555 TRS33 6888 // ER to Golgi transport // inferred from mutant phenotype 30008 // TRAPP complex // inferred from direct assay --- 312.295074462891 126.47632598877 144.66764831543 335.155944824219 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR115C /GEN=TRS33 /DB_XREF=GI:6324689 /SEG=NC_001147:-538659,539465 /DEF=Trapp subunit of 33 kDa /NOTE=Trs33p; go_component: TRAPP [goid GO:0030008] [evidence IDA] [pmid 10727015]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 10727015] --- --- --- --- --- --- S0005641 // TRS33 SGDID:S0005641, Chr XV from 539465-538659, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017546 // cdna:Genscan chromosome:SGD1:XV:538659:539465:-1 // ensembl // 11 // --- /// YOR115C // cdna:known chromosome:SGD1:XV:538659:539465:-1 gene:YOR115C // ensembl // 11 // --- --- No cerevisiae_gene -2.05687824506319 -2.46919786783355 -1.24389034742812 -2.15870706477491 1.07320278874281 Max fold change below threshold 4 2.46919786783355 Max fold change at or above threshold 0.756257589993933 -0.944082226516454 -0.777622006969219 0.96544664349174 229.648748397827 109.283301296489 0.475871530147311 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774216_at SPAC11D3.17.S1 --- 2.46795748150346 --- --- --- --- 2.71711897850037 4.29331207275391 3.22449254989624 1.10095858573914 0.24609400331974 0.334473013877869 0.432372987270355 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11D3.17 /DEF=zinc finger protein --- --- --- --- --- --- SPAC11D3.17 // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.83363481681928 1.58009719365454 -1.29004489293738 1.18673218781016 -2.46795748150346 Max fold change below threshold 3 2.46795748150346 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778526_at SPBC25B2.06c.S1 --- 2.46686766218155 --- --- --- --- 4.95178365707397 2.50721073150635 12.2153949737549 5.38117265701294 0.398925989866257 0.432372987270355 0.030273400247097 0.111571997404099 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25B2.06c /DEF=BTB domain --- --- --- --- --- --- SPBC25B2.06c // |btb2||BTB/POZ domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.41893929333921 -1.97501693609093 -1.079379137654 2.46686766218155 1.08671400644201 Max fold change below threshold 4 2.46686766218155 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1773889_at YOL131W.S1 Hypothetical protein 2.46671100223868 9.28308296203613 17.60835313797 --- --- --- --- 15.7906122207642 12.1646814346313 6.40148448944092 19.4260940551758 0.018554700538516 0.091552734375 0.0461426004767418 0.000732421991415322 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL131W /GEN=GAS4 /DB_XREF=GI:6324441 /SEG=NC_001147:+73030,73356 /DEF=Hypothetical ORF /NOTE=Yol131wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005491 // YOL131W SGDID:S0005491, Chr XV from 73030-73356, Uncharacterized ORF // sgd // 11 // --- /// YOL131W // cdna:known chromosome:SGD1:XV:73030:73356:1 gene:YOL131W // ensembl // 11 // --- --- No cerevisiae_gene -1.08836793356335 -1.29807034451476 1.13936989998041 -2.46671100223868 1.23023058153699 Max fold change below threshold 4 2.46671100223868 Max fold change at or above threshold 0.422233481275014 -0.23066991956127 -1.26842025379125 1.07685669207751 13.4457180500031 5.55354862830929 0.413034737725147 PPAPPP Called_P_>2EXP 3 0 PAPP 1 3 0 Yes Yes 2 < x = 3
1774126_at YDR148C.S1 Dihydrolipoyl transsuccinylase, a component of the mitochondrial alpha-ketoglutarate dehydrogenase complex, which catalyzes a step in the tricarboxylic acid (TCA) cycle, the oxidative decarboxylation of alpha-ketoglutarate to succinyl-CoA 2.46665864714544 4835.97216796875 2108.40954589844 KGD2 6099 // tricarboxylic acid cycle // traceable author statement /// 6103 // 2-oxoglutarate metabolism // traceable author statement 5759 // mitochondrial matrix // non-traceable author statement /// 9353 // oxoglutarate dehydrogenase complex (sensu Eukaryota) // inferred from direct assay /// 42645 // mitochondrial nucleoid // inferred from direct assay 4149 // dihydrolipoyllysine-residue succinyltransferase activity // inferred from mutant phenotype /// 4149 // dihydrolipoyllysine-residue succinyltransferase activity // inferred from sequence similarity 2104.64624023438 5191.44384765625 4480.50048828125 2112.1728515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR148C /GEN=KGD2 /DB_XREF=GI:6320352 /SEG=NC_001136:-753669,755060 /DEF=dihydrolipoyl transsuccinylase component of alpha-ketoglutarate dehydrogenase complex in mitochondria /NOTE=Kgd2p; go_component: mitochondrial matrix [goid GO:0005759] [evidence NAS]; go_component: mitochondrial nucleoid [goid GO:0042645] [evidence IDA] [pmid 11926067]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: 2-oxoglutarate metabolism [goid GO:0006103] [evidence TAS] [pmid 9175438]; go_process: tricarboxylic acid cycle [goid GO:0006099] [evidence TAS] [pmid 9175438] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 1.29999995231628 --- S0002555 // KGD2 SGDID:S0002555, Chr IV from 755061-753670, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023962 // cdna:GeneFinder chromosome:SGD1:IV:753670:754821:-1 // ensembl // 11 // --- /// GENSCAN00000025207 // cdna:Genscan chromosome:SGD1:IV:753670:755061:-1 // ensembl // 11 // --- /// YDR148C // cdna:known chromosome:SGD1:IV:753670:755061:-1 gene:YDR148C // ensembl // 11 // --- --- No cerevisiae_gene -1.07219384840848 2.46665864714544 1.19024837044991 2.12886156477409 1.00357618833239 Max fold change below threshold 4 2.46665864714544 Max fold change at or above threshold -0.854029189979081 1.07367044636535 0.629687578154785 -0.849328834541054 3472.19085693359 1601.28556815806 0.461174409511638 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778149_at YDR034W-B.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery 2.4662276372262 4675.13220214844 4164.07141113281 --- --- --- --- 4676.86865234375 5962.50390625 3387.76049804688 3651.27416992188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR034W-B /GEN=LYS14 /DB_XREF=GI:6320239 /SEG=NC_001136:+521309,521464 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery /NOTE=Ydr034w-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007234 // YDR034W-B SGDID:S0007234, Chr IV from 521310-521465, Uncharacterized ORF // sgd // 11 // --- /// YDR034W-B // cdna:known chromosome:SGD1:IV:521310:521465:1 gene:YDR034W-B // ensembl // 11 // --- --- No cerevisiae_gene -2.4662276372262 1.27489231566552 -1.14537492292251 -1.38051927078082 -1.28088673561422 Max fold change below threshold 4 2.4662276372262 Max fold change at or above threshold 0.220018645718591 1.31951410025121 -0.882446887755104 -0.657085858214692 4419.60180664063 1169.29565157026 0.264570362382725 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774365_at YKL001C.S1 Adenylylsulfate kinase, required for sulfate assimilation and involved in methionine metabolism 2.46617743626747 634.477172851563 1513.54241943359 MET14 103 // sulfate assimilation // non-traceable author statement /// 6555 // methionine metabolism // inferred from mutant phenotype 5622 // intracellular // inferred from direct assay /// 5737 // cytoplasm // traceable author statement 4020 // adenylyl-sulfate kinase activity // traceable author statement 1479.42016601563 669.070434570313 599.883911132813 1547.66467285156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL001C /GEN=MET14 /DB_XREF=GI:6322852 /SEG=NC_001143:-438420,439028 /DEF=Adenylylsulfate kinase, required for sulfate assimilation and involved in methionine metabolism /NOTE=Met14p; go_component: cell [goid GO:0005623] [evidence IDA] [pmid 3019265]; go_function: adenylyl-sulfate kinase activity [goid GO:0004020] [evidence TAS] [pmid 1654509]; go_process: methionine metabolism [goid GO:0006555] [evidence IMP] [pmid 1101032]; go_process: sulfate assimilation [goid GO:0000103] [evidence NAS] [pmid 1654509] --- --- --- --- --- --- S0001484 // MET14 SGDID:S0001484, Chr XI from 439028-438420, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018417 // cdna:Genscan chromosome:SGD1:XI:438420:439028:-1 // ensembl // 10 // --- /// GENEFINDER00000023146 // cdna:GeneFinder chromosome:SGD1:XI:438420:439028:-1 // ensembl // 10 // --- /// YKL001C // cdna:known chromosome:SGD1:XI:438420:439028:-1 gene:YKL001C // ensembl // 10 // --- --- No cerevisiae_gene -1.17174567085609 -2.21115758457588 -1.14820244514603 -2.46617743626747 1.04612922576264 Max fold change below threshold 4 2.46617743626747 Max fold change at or above threshold 0.796363772991338 -0.79543855258408 -0.931344402407543 0.930419182000286 1074.00979614258 509.076861131222 0.473996478393052 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779458_at SPBC1271.04c.S1 --- 2.46581352878562 --- --- --- --- 1.16427087783813 2.87087488174438 1.44843685626984 1.14920139312744 0.888427972793579 0.888427972793579 0.943848013877869 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1271.04c /DEF=deoxyhypusine synthase --- --- --- --- --- --- SPBC1271.04c // |||deoxyhypusine synthase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.18493130201 2.46581352878562 1.66705209544518 1.24407204873092 -1.01311300595423 Max fold change below threshold 1 2.46581352878562 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779202_at YGL051W.S1 Putative integral membrane protein, involved in vesicle formation; forms complex with Mst28p; member of DUP240 gene family; binds COPI and COPII vesicles /// Putative integral membrane protein, involved in vesicle formation; forms complex with Mst27p; member of DUP240 gene family; binds COPI and COPII vesicles 2.46381974290951 70.7816772460938 81.2209281921387 MST27 /// MST28 16050 // vesicle organization and biogenesis // inferred from genetic interaction /// 16050 // vesicle organization and biogenesis // inferred from physical interaction 5783 // endoplasmic reticulum // inferred from direct assay /// 5794 // Golgi apparatus // inferred from direct assay /// 16021 // integral to membrane // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from physical interaction /// 5794 // Golgi apparatus // inferred from physical interaction 5515 // protein binding // inferred from direct assay 72.4632339477539 66.1118774414063 75.4514770507813 89.9786224365234 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL051W /GEN=MST27 /DB_XREF=GI:6321387 /SEG=NC_001139:+403688,404392 /DEF=Putative integral membrane protein, involved in vesicle formation; forms complex with Mst28p; member of DUP240 gene family; binds COPI and COPII vesicles /NOTE=Mst27p; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 12925749]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 12925749]; go_component: integral to membrane [goid GO:0016021] [evidence IDA] [pmid 12925749]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 12925749]; go_process: vesicle organization and biogenesis [goid GO:0016050] [evidence IGI,IPI] [pmid 12925749] --- --- --- --- --- S0000079 // span:45-67,74-96 // numtm:2 /// S0003019 // span:45-67,74-96 // numtm:2 S0003019 // MST27 SGDID:S0003019, Chr VII from 403690-404394, Verified ORF // sgd // 11 // --- /// GENSCAN00000019305 // cdna:Genscan chromosome:SGD1:VII:403690:404394:1 // ensembl // 11 // --- /// YGL051W // cdna:known chromosome:SGD1:VII:403690:404394:1 gene:YGL051W // ensembl // 11 // --- --- No cerevisiae_gene -1.03664408029459 -1.09606982515323 2.46381974290951 1.04123805880899 1.2417141429459 Max fold change below threshold 4 2.46381974290951 Max fold change at or above threshold -0.350328773672443 -0.979220714393121 -0.0544420599397369 1.3839915480053 76.0013027191162 10.0992811246227 0.132883000202606 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777982_at YOR096W.S1 Protein component of the small (40S) ribosomal subunit, nearly identical to Rps7Bp; interacts with Kti11p; deletion causes hypersensitivity to zymocin; has similarity to rat S7 and Xenopus S8 ribosomal proteins 2.46379502202343 1593.34063720703 3542.69189453125 RPS7A 6412 // protein biosynthesis // traceable author statement 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3752.24462890625 1522.95324707031 1663.72802734375 3333.13916015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR096W /GEN=RPS7A /DB_XREF=GI:6324670 /SEG=NC_001147:+505794,506767 /DEF=Protein component of the small (40S) ribosomal subunit, nearly identical to Rps7Bp; interacts with Kti11p; deletion causes hypersensitivity to zymocin; has similarity to rat S7 and Xenopus S8 ribosomal proteins /NOTE=Rps7ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0005622 // RPS7A SGDID:S0005622, Chr XV from 505794-505937,506339-506767, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022730 // cdna:GeneFinder chromosome:SGD1:XV:505794:506767:1 // ensembl // 11 // --- /// YOR096W // cdna:known chromosome:SGD1:XV:505794:506767:1 gene:YOR096W // ensembl // 11 // --- --- No cerevisiae_gene 1.03077324679485 -2.46379502202343 -1.53427768068939 -2.25532332643152 -1.1257389651653 Max fold change below threshold 4 2.46379502202343 Max fold change at or above threshold 1.03894287755223 -0.916850848927225 -0.793346835791639 0.671254807166637 2568.01626586914 1139.83972422736 0.443860009524349 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776076_at YPL122C.S1 Subunit of TFIIH and nucleotide excision repair factor 3 complexes, involved in transcription initiation, required for nucleotide excision repair, similar to 52 kDa subunit of human TFIIH 2.46337543008105 268.607345581055 624.292541503906 TFB2 717 // nucleotide-excision repair, DNA duplex unwinding // traceable author statement /// 6289 // nucleotide-excision repair // traceable author statement /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 7070 // negative regulation of transcription from RNA polymerase II promoter, mitotic // traceable author statement 112 // nucleotide excision repair factor 3 complex // traceable author statement /// 5675 // transcription factor TFIIH complex // traceable author statement /// 5675 // transcription factor TFIIH complex // inferred from direct assay 16251 // general RNA polymerase II transcription factor activity // traceable author statement 602.3017578125 244.502624511719 292.712066650391 646.283325195313 0.000244141003349796 0.00122069998178631 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL122C /GEN=TFB2 /DB_XREF=GI:6325135 /SEG=NC_001148:-319225,320766 /DEF=Subunit of TFIIH and nucleotide excision repair factor 3 complexes, involved in transcription initiation, required for nucleotide excision repair, similar to 52 kDa subunit of human TFIIH /NOTE=Tfb2p; go_component: nucleotide excision repair factor 3 complex [goid GO:0000112] [evidence TAS] [pmid 10915862]; go_component: transcription factor TFIIH complex [goid GO:0005675] [evidence TAS] [pmid 9774381]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9774381]; go_process: negative regulation of transcription from Pol II promoter, mitotic [goid GO:0007070] [evidence TAS] [pmid 10384273]; go_process: nucleotide-excision repair [goid GO:0006289] [evidence TAS] [pmid 9774381]; go_process: nucleotide-excision repair, DNA duplex unwinding [goid GO:0000717] [evidence TAS] [pmid 10915862]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 10384286] --- --- --- --- --- --- S0006043 // TFB2 SGDID:S0006043, Chr XVI from 320766-319225, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017097 // cdna:Genscan chromosome:SGD1:XVI:319225:320766:-1 // ensembl // 11 // --- /// GENEFINDER00000021006 // cdna:GeneFinder chromosome:SGD1:XVI:319225:320121:-1 // ensembl // 11 // --- /// YPL122C // cdna:known chromosome:SGD1:XVI:319225:320766:-1 gene:YPL122C // ensembl // 11 // --- --- No cerevisiae_gene -1.29545641018505 -2.46337543008105 1.28787968762414 -2.05765947644337 1.07302247886931 Max fold change below threshold 4 2.46337543008105 Max fold change at or above threshold 0.752631532420556 -0.975233563383568 -0.74242301521051 0.965025046173522 446.44994354248 207.075849943173 0.463827698801063 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776603_at YER086W.S1 Threonine deaminase, catalyzes the first step in isoleucine biosynthesis; expression is under general amino acid control; ILV1 locus exhibits highly positioned nucleosomes whose organization is independent of known ILV1 regulation 2.46191952857165 339.395462036133 694.401397705078 ILV1 9082 // branched chain family amino acid biosynthesis // traceable author statement 5739 // mitochondrion // inferred from direct assay 4794 // threonine ammonia-lyase activity // traceable author statement 637.7119140625 259.030364990234 419.760559082031 751.090881347656 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER086W /GEN=ILV1 /DB_XREF=GI:6320930 /SEG=NC_001137:+328473,330203 /DEF=Threonine deaminase, catalyzes the first step in isoleucine biosynthesis; expression is under general amino acid control; ILV1 locus exhibits highly positioned nucleosomes whose organization is independent of known ILV1 regulation /NOTE=Ilv1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: threonine ammonia-lyase activity [goid GO:0004794] [evidence TAS] [pmid 3289762]; go_process: branched chain family amino acid biosynthesis [goid GO:0009082] [evidence TAS] [pmid 3289762] --- --- --- --- --- --- S0000888 // ILV1 SGDID:S0000888, Chr V from 328473-330203, Verified ORF // sgd // 10 // --- /// GENSCAN00000016873 // cdna:Genscan chromosome:SGD1:V:328473:330203:1 // ensembl // 10 // --- /// GENEFINDER00000019668 // cdna:GeneFinder chromosome:SGD1:V:328473:330203:1 // ensembl // 10 // --- /// YER086W // cdna:known chromosome:SGD1:V:328473:330203:1 gene:YER086W // ensembl // 10 // --- --- No cerevisiae_gene 2.38637240684393 -2.46191952857165 -1.12818945746924 -1.51922780800822 1.17779026043732 Max fold change below threshold 4 2.46191952857165 Max fold change at or above threshold 0.548824011680015 -1.17142707040066 -0.441271901798334 1.06387496051898 516.898429870605 220.131556966814 0.425870043795488 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778199_at YJL073W.S1 DnaJ-like chaperone required for nuclear membrane fusion during mating, localizes to the ER membrane; exhibits genetic interactions with KAR2 2.46105268123512 93.6013374328613 183.55184173584 JEM1 742 // karyogamy during conjugation with cellular fusion // inferred from genetic interaction /// 742 // karyogamy during conjugation with cellular fusion // inferred from mutant phenotype /// 6457 // protein folding // inferred from genetic interaction 300 // peripheral to membrane of membrane fraction // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 42175 // nuclear envelope-endoplasmic reticulum network // inferred from direct assay 51082 // unfolded protein binding // inferred from sequence similarity /// 51087 // chaperone binding // inferred from sequence similarity 172.744354248047 117.011428833008 70.1912460327148 194.359329223633 0.000244141003349796 0.000244141003349796 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL073W /GEN=JEM1 /DB_XREF=GI:6322388 /SEG=NC_001142:+303097,305034 /DEF=DnaJ-like chaperone required for nuclear membrane fusion during mating, localizes to the ER membrane; exhibits genetic interactions with KAR2 /NOTE=Jem1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 9148890]; go_component: peripheral to membrane of membrane fraction [goid GO:0000300] [evidence IDA] [pmid 9148890]; go_function: co-chaperone activity [goid GO:0003767] [evidence IGI,ISS] [pmid 9148890]; go_process: karyogamy during conjugation with cellular fusion [goid GO:0000742] [evidence IGI,IMP] [pmid 10069807]; go_process: protein folding [goid GO:0006457] [evidence IGI] [pmid 9817751] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 2.00000006274879E-22 --- S0003609 // JEM1 SGDID:S0003609, Chr X from 303097-305034, Verified ORF // sgd // 10 // --- /// GENSCAN00000024082 // cdna:Genscan chromosome:SGD1:X:303274:305034:1 // ensembl // 10 // --- /// GENEFINDER00000024290 // cdna:GeneFinder chromosome:SGD1:X:303301:305034:1 // ensembl // 10 // --- /// YJL073W // cdna:known chromosome:SGD1:X:303097:305034:1 gene:YJL073W // ensembl // 10 // --- --- No cerevisiae_gene -1.45192943152747 -1.47630326345795 -1.02399644996865 -2.46105268123512 1.12512695462422 Max fold change below threshold 4 2.46105268123512 Max fold change at or above threshold 0.60972526156515 -0.384831241060899 -1.22033946015048 0.995445439646229 138.576589584351 56.0379679463968 0.404382645831292 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773392_at SPBC1709.06.S1 --- 2.46084122974487 --- --- --- --- 6.83221292495728 5.71500253677368 3.18448090553284 2.7763729095459 0.0805663987994194 0.398925989866257 0.432372987270355 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1709.06 /DEF=dihydrouridine synthase (predicted) --- --- --- --- --- --- SPBC1709.06 // |||tRNA dihydrouridine synthase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.67268063381712 -1.19548729523649 -1.84047913997014 -2.14547146854821 -2.46084122974487 Max fold change below threshold 4 2.46084122974487 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776389_at SPAC3A12.13c.S1 --- 2.4606287911304 --- --- --- --- 8.15449714660645 8.37380981445313 19.023904800415 9.5242223739624 0.466064006090164 0.601073980331421 0.303710997104645 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A12.13c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC3A12.13c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.4606287911304 1.02689468938473 -2.02631413685768 2.33293414154078 1.16797175874002 Max fold change below threshold 4 2.4606287911304 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778252_at YGL234W.S1 Bifunctional enzyme of the 'de novo' purine nucleotide biosynthetic pathway, contains aminoimidazole ribotide synthetase and glycinamide ribotide synthetase activities 2.45949497703712 1456.47088623047 1504.87139892578 ADE5,7 6144 // purine base metabolism // traceable author statement /// 6164 // purine nucleotide biosynthesis // traceable author statement /// 6189 // 'de novo' IMP biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 4637 // phosphoribosylamine-glycine ligase activity // traceable author statement /// 4641 // phosphoribosylformylglycinamidine cyclo-ligase activity // traceable author statement 1369.92919921875 1145.66943359375 1767.27233886719 1639.81359863281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL234W /GEN=ADE5,7 /DB_XREF=GI:6321203 /SEG=NC_001139:+56481,58889 /DEF=Bifunctional enzyme of the 'de novo' purine nucleotide biosynthetic pathway, contains aminoimidazole ribotide synthetase and glycinamide ribotide synthetase activities /NOTE=Ade5,7p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: phosphoribosylamine-glycine ligase activity [goid GO:0004637] [evidence TAS]; go_function: phosphoribosylformylglycinamidine cyclo-ligase activity [goid GO:0004641] [evidence TAS]; go_process: purine base metabolism [goid GO:0006144] [evidence TAS] [pmid 9148957]; go_process: purine nucleotide biosynthesis [goid GO:0006164] [evidence TAS] --- --- --- --- --- --- S0003203 // ADE5,7 SGDID:S0003203, Chr VII from 56482-58890, Verified ORF // sgd // 11 // --- /// GENSCAN00000019174 // cdna:Genscan chromosome:SGD1:VII:56482:58890:1 // ensembl // 11 // --- /// GENEFINDER00000021579 // cdna:GeneFinder chromosome:SGD1:VII:56482:58890:1 // ensembl // 11 // --- /// YGL234W // cdna:known chromosome:SGD1:VII:56482:58890:1 gene:YGL234W // ensembl // 11 // --- --- No cerevisiae_gene 2.45949497703712 -1.19574561304437 1.70581031253397 1.29004647822313 1.19700609313822 Max fold change below threshold 4 2.45949497703712 Max fold change at or above threshold -0.398262580706986 -1.20477066876462 1.03070732375881 0.572325925712793 1480.67114257813 278.062636873363 0.187794999765582 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778802_at YJR112W.S1 Essential component of the MIND kinetochore complex (Mtw1p Including Nnf1p-Nsl1p-Dsn1p) which joins kinetochore subunits contacting DNA to those contacting microtubules; required for accurate chromosome segregation 2.45925265898249 187.538726806641 450.52278137207 NNF1 7059 // chromosome segregation // inferred from direct assay 776 // kinetochore // inferred from direct assay /// 818 // MIND complex // inferred from direct assay /// 922 // spindle pole // inferred from direct assay --- 430.237426757813 174.946411132813 200.131042480469 470.808135986328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR112W /GEN=NNF1 /DB_XREF=GI:6322572 /SEG=NC_001142:+636945,637550 /DEF=Essential component of the MIND kinetochore complex (Mtw1p Including Nnf1p-Nsl1p-Dsn1p) which joins kinetochore subunits contacting DNA to those contacting microtubules; required for accurate chromosome segregation /NOTE=Nnf1p; go_component: MIND complex [goid GO:0000818] [evidence IDA] [pmid 14633972]; go_component: kinetochore [goid GO:0000776] [evidence IDA] [pmid 14657030]; go_component: spindle pole [goid GO:0000922] [evidence IDA] [pmid 12455957]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromosome segregation [goid GO:0007059] [evidence IDA] [pmid 12455957] --- --- --- --- --- --- S0003873 // NNF1 SGDID:S0003873, Chr X from 636945-637550, Verified ORF // sgd // 11 // --- /// GENSCAN00000024221 // cdna:Genscan chromosome:SGD1:X:636945:637550:1 // ensembl // 11 // --- /// GENEFINDER00000024284 // cdna:GeneFinder chromosome:SGD1:X:636945:637550:1 // ensembl // 11 // --- /// YJR112W // cdna:known chromosome:SGD1:X:636945:637550:1 gene:YJR112W // ensembl // 11 // --- --- No cerevisiae_gene -1.24710527002515 -2.45925265898249 1.03823515642622 -2.14977857220626 1.09429841921064 Max fold change below threshold 4 2.45925265898249 Max fold change at or above threshold 0.726459713486845 -0.941233722676066 -0.776714637318343 0.991488646507564 319.030754089355 153.080302463973 0.479829297024754 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778289_at SPAC1B3.01c.S1 --- 2.45910400441387 --- --- --- --- 33.307487487793 38.5525245666504 37.3620109558105 17.0536823272705 0.0107421996071935 0.014160200022161 0.0239257998764515 0.030273400247097 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B3.01c /DEF=uracil phosphoribosyltransferase (predicted) --- --- --- --- --- --- SPAC1B3.01c // |||uracil phosphoribosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.45910400441387 1.15747321321609 -1.19619409141885 1.12173009055407 -1.95309651303467 Max fold change below threshold 4 2.45910400441387 Max fold change at or above threshold PAPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1778280_at YBR212W.S1 RNA binding protein that negatively regulates growth rate; interacts with the 3' UTR of the mitochondrial porin (POR1) mRNA and enhances its degradation; overexpression impairs mitochondrial function; expressed in stationary phase 2.45872519418216 863.130584716797 1762.75042724609 NGR1 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype /// 40008 // regulation of growth // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 48471 // perinuclear region // inferred from direct assay 3697 // single-stranded DNA binding // inferred from direct assay /// 3723 // RNA binding // inferred from direct assay /// 45182 // translation regulator activity // inferred from mutant phenotype 1773.28381347656 721.220825195313 1005.04034423828 1752.21704101563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR212W /GEN=NGR1 /DB_XREF=GI:6319689 /SEG=NC_001134:+647843,649861 /DEF=negative growth regulatory protein /NOTE=Ngr1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 8325883]; go_function: single-stranded DNA binding [goid GO:0003697] [evidence IDA] [pmid 8325883]; go_process: regulation of growth [goid GO:0040008] [evidence IMP] [pmid 8325883] --- --- --- --- --- --- S0000416 // NGR1 SGDID:S0000416, Chr II from 647881-649899, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022204 // cdna:GeneFinder chromosome:SGD1:II:647884:649899:1 // ensembl // 11 // --- /// GENSCAN00000021309 // cdna:Genscan chromosome:SGD1:II:649390:649899:1 // ensembl // 9 // --- /// YBR212W // cdna:known chromosome:SGD1:II:647881:649899:1 gene:YBR212W // ensembl // 11 // --- --- No cerevisiae_gene -1.79147420903869 -2.45872519418216 -1.09258866902096 -1.7643906770932 -1.01202292408292 Max fold change below threshold 4 2.45872519418216 Max fold change at or above threshold 0.864928855495119 -1.1117690166088 -0.578506801700602 0.825346962814279 1312.94050598145 532.232569847145 0.40537447616432 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778229_at YOR293C-A.S1 Identified by expression profiling and mass spectrometry 2.45830462332054 23.1594285964966 53.689847946167 --- --- --- --- 43.8983497619629 28.4616928100586 17.8571643829346 63.4813461303711 0.00415039015933871 0.018554700538516 0.0461426004767418 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR293C-A /GEN=RPS10A /DB_XREF=GI:33438886 /SEG=NC_001147:-867995,868144 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Yor293c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028858 // YOR293C-A SGDID:S0028858, Chr XV from 868144-867995, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// YOR293C-A // cdna:known chromosome:SGD1:XV:867995:868144:-1 gene:YOR293C-A // ensembl // 10 // --- --- No cerevisiae_gene 1.32204928374411 -1.54236608675816 -1.8669761396824 -2.45830462332054 1.44609869105778 Max fold change below threshold 4 2.45830462332054 Max fold change at or above threshold 0.275985680478889 -0.502333798083779 -1.03701634376178 1.26336446136667 38.4246382713318 19.8333170080895 0.516161450058123 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1772740_at SPAC17A2.02c.S1 --- 2.45805532593815 --- --- --- --- 0.505464673042297 0.881105303764343 1.2424601316452 0.628961324691772 0.919434010982513 0.850341975688934 0.870360970497131 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A2.02c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC17A2.02c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.16507776834238 1.74315901932599 1.33438196099426 2.45805532593815 1.24432301253849 Max fold change below threshold 0 2.45805532593815 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774658_at YHR020W.S1 Protein required for cell viability 2.45773320396131 1110.10745239258 1239.05572509766 --- 6418 // tRNA aminoacylation for protein translation // inferred from sequence similarity --- 4827 // proline-tRNA ligase activity // inferred from sequence similarity 1142.84033203125 974.310119628906 1245.90478515625 1335.27111816406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR020W /GEN=DED81 /DB_XREF=GI:6321808 /SEG=NC_001140:+143988,146054 /DEF=Protein required for cell viability /NOTE=Yhr020wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: proline-tRNA ligase activity [goid GO:0004827] [evidence ISS] [pmid 10592175]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001062 // YHR020W SGDID:S0001062, Chr VIII from 143988-146054, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016569 // cdna:Genscan chromosome:SGD1:VIII:143988:146054:1 // ensembl // 11 // --- /// GENEFINDER00000020254 // cdna:GeneFinder chromosome:SGD1:VIII:143988:146054:1 // ensembl // 11 // --- /// YHR020W // cdna:known chromosome:SGD1:VIII:143988:146054:1 gene:YHR020W // ensembl // 11 // --- --- No cerevisiae_gene 2.45773320396131 -1.17297389096865 -1.57755984400232 1.09018272302467 1.16837941463861 Max fold change below threshold 4 2.45773320396131 Max fold change at or above threshold -0.204854376284917 -1.29252875093448 0.460311607922758 1.03707151929664 1174.58158874512 154.945465600992 0.131915455755211 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769557_at YMR216C.S1 SR protein kinase (SRPK) involved in regulating proteins involved in mRNA metabolism and cation homeostasis; similar to human SRPK1 2.45747735184405 1801.12487792969 942.461791992188 SKY1 6376 // mRNA splice site selection // inferred from genetic interaction /// 6873 // cell ion homeostasis // inferred from mutant phenotype /// 30003 // cation homeostasis // inferred from mutant phenotype /// 42307 // positive regulation of protein-nucleus import // inferred from mutant phenotype /// 42493 // response to drug // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4672 // protein kinase activity // inferred from direct assay 893.820129394531 1405.70703125 2196.54272460938 991.103454589844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR216C /GEN=SKY1 /DB_XREF=GI:6323872 /SEG=NC_001145:-698810,701038 /DEF=SRPK1-like Kinase in Yeast (SRPK1 is a human serine kinase that specifically phosphoryates arginine-serine rich domains found in the SR family of splicing factors.) /NOTE=Sky1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11233987]; go_function: protein kinase activity [goid GO:0004672] [evidence IDA] [pmid 10318902]; go_process: cell ion homeostasis [goid GO:0006873] [evidence IMP] [pmid 11113192]; go_process: mRNA splice site selection [goid GO:0006376] [evidence IGI] [pmid 11565750]; go_process: positive regulation of protein-nucleus import [goid GO:0042307] [evidence IMP] [pmid 10952997]; go_process: response to drug [goid GO:0042493] [evidence IMP] [pmid 11585720] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-23 /// ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 7.0E-28 /// hanks // 3.1.2 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk2 // 2.0E-27 --- --- S0004829 // SKY1 SGDID:S0004829, Chr XIII from 701038-698810, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018897 // cdna:Genscan chromosome:SGD1:XIII:698810:699460:-1 // ensembl // 11 // --- /// GENEFINDER00000021971 // cdna:GeneFinder chromosome:SGD1:XIII:698810:701038:-1 // ensembl // 11 // --- /// YMR216C // cdna:known chromosome:SGD1:XIII:698810:701038:-1 gene:YMR216C // ensembl // 11 // --- --- No cerevisiae_gene 1.1023988160894 1.57269565209078 1.39802377012457 2.45747735184405 1.10883993545906 Max fold change below threshold 4 2.45747735184405 Max fold change at or above threshold -0.80610287293794 0.0571955241260065 1.39094167770677 -0.642034328894832 1371.79333496094 592.943185805026 0.432239442118233 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771142_at SPAPB24D3.01.S1 --- 2.45626508647849 --- --- --- --- 0.428755313158035 1.05313670635223 0.494488686323166 0.712324738502502 0.997070014476776 0.870360970497131 0.932372987270355 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB24D3.01 /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPAPB24D3.01 // ||SPAPB2C8.02|transcription factor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.08380038120087 2.45626508647849 -1.83362020873993 1.15331209001462 1.6613782188629 Max fold change below threshold 0 2.45626508647849 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769562_at YDR472W.S1 One of 10 subunits of the transport protein particle (TRAPP) complex of the cis-Golgi which mediates vesicle docking and fusion; involved in endoplasmic reticulum (ER) to Golgi membrane traffic 2.45597267197731 434.967269897461 373.246994018555 TRS31 6888 // ER to Golgi transport // inferred from mutant phenotype 30008 // TRAPP complex // inferred from direct assay --- 358.795654296875 431.924713134766 438.009826660156 387.698333740234 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR472W /GEN=TRS31 /DB_XREF=GI:6320680 /SEG=NC_001136:+1403310,1404161 /DEF=targeting complex (TRAPP) component involved in ER to Golgi membrane traffic /NOTE=Trs31p; go_component: TRAPP [goid GO:0030008] [evidence IDA] [pmid 10727015]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 10727015] --- --- --- --- --- --- S0002880 // TRS31 SGDID:S0002880, Chr IV from 1403312-1404163, Verified ORF // sgd // 11 // --- /// GENSCAN00000025469 // cdna:Genscan chromosome:SGD1:IV:1403495:1404163:1 // ensembl // 11 // --- /// YDR472W // cdna:known chromosome:SGD1:IV:1403312:1404163:1 gene:YDR472W // ensembl // 11 // --- --- No cerevisiae_gene 2.45597267197731 1.20381812868163 1.44549042035836 1.22077795930532 1.08055470877985 Max fold change below threshold 4 2.45597267197731 Max fold change at or above threshold -1.20448076202278 0.739453734525906 0.901209707943313 -0.436182680446438 404.107131958008 37.6190962029461 0.0930918888282705 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772016_at YIL070C.S1 Acidic protein of the mitochondrial matrix involved in oxidative phosphorylation; related to the human complement receptor gC1q-R 2.45567310285678 337.263000488281 842.7939453125 MAM33 9060 // aerobic respiration // inferred from mutant phenotype 5759 // mitochondrial matrix // inferred from direct assay --- 792.172729492188 322.588836669922 351.937164306641 893.415161132813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL070C /GEN=MAM33 /DB_XREF=GI:6322119 /SEG=NC_001141:-230269,231069 /DEF=33-kDa mitochondrial acidic matrix protein /NOTE=Mam33p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 9305894]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 9305894] --- --- --- --- --- --- S0001332 // MAM33 SGDID:S0001332, Chr IX from 231069-230269, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016424 // cdna:Genscan chromosome:SGD1:IX:230269:230691:-1 // ensembl // 9 // --- /// GENEFINDER00000019106 // cdna:GeneFinder chromosome:SGD1:IX:230269:230937:-1 // ensembl // 11 // --- /// YIL070C // cdna:known chromosome:SGD1:IX:230269:231069:-1 gene:YIL070C // ensembl // 11 // --- --- No cerevisiae_gene -1.06639069743443 -2.45567310285678 1.1035629362542 -2.25089251671634 1.12780348006365 Max fold change below threshold 4 2.45567310285678 Max fold change at or above threshold 0.685179376878431 -0.906501754709874 -0.807023940293617 1.02834631812506 590.028472900391 295.02384837199 0.500016290606701 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778508_at YKR024C.S1 Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis 2.45427960661819 242.001510620117 539.0908203125 DBP7 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 6365 // 35S primary transcript processing // inferred from mutant phenotype 5730 // nucleolus // inferred from direct assay 4004 // ATP-dependent RNA helicase activity // traceable author statement 499.106384277344 280.641357421875 203.361663818359 579.075256347656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR024C /GEN=DBP7 /DB_XREF=GI:6322876 /SEG=NC_001143:-484787,487015 /DEF=Dead-box protein /NOTE=Dbp7p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 9582098]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence IMP] [pmid 9582098]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 9582098] --- --- --- --- --- --- S0001732 // DBP7 SGDID:S0001732, Chr XI from 487015-484787, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018438 // cdna:Genscan chromosome:SGD1:XI:484787:487015:-1 // ensembl // 10 // --- /// GENEFINDER00000023031 // cdna:GeneFinder chromosome:SGD1:XI:484787:487015:-1 // ensembl // 10 // --- /// YKR024C // cdna:known chromosome:SGD1:XI:484787:487015:-1 gene:YKR024C // ensembl // 10 // --- --- No cerevisiae_gene 1.04946058990439 -1.77844915254975 -1.1105298034875 -2.45427960661819 1.16022410169347 Max fold change below threshold 4 2.45427960661819 Max fold change at or above threshold 0.611843529985423 -0.619421611827492 -1.05496863861518 1.06254672045725 390.546165466309 177.431342313322 0.454315924729336 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778320_at YJL209W.S1 Protein required for COB mRNA stability or 5' processing, required for translation of COB mRNAs 2.45402165982659 169.604301452637 573.954544067383 CBP1 6402 // mRNA catabolism // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 31314 // extrinsic to mitochondrial inner membrane // inferred from direct assay 3729 // mRNA binding // inferred from genetic interaction 403.300201416016 174.86604309082 164.342559814453 744.60888671875 0.000244141003349796 0.000244141003349796 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL209W /GEN=CBP1 /DB_XREF=GI:6322252 /SEG=NC_001142:+38005,39969 /DEF=Protein required for COB mRNA stability or 5' processing. required for translation of COB RNAs. /NOTE=Cbp1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 2104848]; go_function: mRNA binding [goid GO:0003729] [evidence IGI] [pmid 9343381]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 9343381]; go_process: mRNA catabolism [goid GO:0006402] [evidence IMP] [pmid 9343381] --- --- --- --- --- --- S0003745 // CBP1 SGDID:S0003745, Chr X from 38005-39969, Verified ORF // sgd // 11 // --- /// GENSCAN00000023981 // cdna:Genscan chromosome:SGD1:X:38005:39969:1 // ensembl // 11 // --- /// GENEFINDER00000024337 // cdna:GeneFinder chromosome:SGD1:X:38191:39969:1 // ensembl // 11 // --- /// YJL209W // cdna:known chromosome:SGD1:X:38005:39969:1 gene:YJL209W // ensembl // 11 // --- --- No cerevisiae_gene -1.93566861856807 -2.30633800758306 1.56568430583819 -2.45402165982659 1.84628939956979 Max fold change below threshold 4 2.45402165982659 Max fold change at or above threshold 0.11592483866774 -0.724193777659768 -0.762896282897629 1.37116522188966 371.77942276001 271.907030609287 0.731366541458125 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776964_at YHR105W.S1 Endosomal protein of unknown function that contains a phox (PX) homology domain and binds to both phosphatidylinositol-3-phosphate (PtdIns(3)P) and proteins involved in ER-Golgi or vesicular transport PMID:14562095|PMID:15263065 2.45395659576357 53.6852130889893 93.5594825744629 YPT35 --- 5768 // endosome // inferred from direct assay --- 83.5147323608398 41.786075592041 65.5843505859375 103.604232788086 0.000244141003349796 0.018554700538516 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR105W /GEN=YPT35 /DB_XREF=GI:6321897 /SEG=NC_001140:+324768,325412 /DEF=Hypothetical ORF /NOTE=Ypt35p; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001147 // YPT35 SGDID:S0001147, Chr VIII from 324768-325412, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016642 // cdna:Genscan chromosome:SGD1:VIII:324768:325412:1 // ensembl // 11 // --- /// YHR105W // cdna:known chromosome:SGD1:VIII:324768:325412:1 gene:YHR105W // ensembl // 11 // --- --- No cerevisiae_gene 1.15688530054923 -1.99862588619705 2.45395659576357 -1.27339421088584 1.24055037787161 Max fold change below threshold 4 2.45395659576357 Max fold change at or above threshold 0.376148953387569 -1.21054538948377 -0.305637558107176 1.14003399420338 73.6223478317261 26.2991148586848 0.357216465288435 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1773912_at SPAC17A5.09c.S1 --- 2.45384608222012 9.8373646736145 5.43881094455719 --- --- --- --- 7.72819900512695 10.5104761123657 9.16425323486328 3.14942288398743 0.018554700538516 0.0561522990465164 0.014160200022161 0.149657994508743 P M P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A5.09c /DEF=low similarity to human protein phosphatase inhibitor 2 and S. cerevisiae GLC8-Modulator of protein serinethreonine phosphatase-involved in control of vacuole fusion-by multiple alignment --- --- --- --- --- --- SPAC17A5.09c // |||low similarity to human protein phosphatase inhibitor 2 and S. cerevisiae GLC8-Modulator of protein serine/threonine phosphatase-involved in control of vacuole fusion-by multiple alignment|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No cerevisiae_gene -2.08142416027646 1.36001623475185 -1.15648421323334 1.18582003760302 -2.45384608222012 Max fold change below threshold 4 2.45384608222012 Max fold change at or above threshold 0.0281524053934963 0.89738726722241 0.476802324812382 -1.40234199742829 7.63808780908585 3.20083469890372 0.419062307073268 PAMAPA No 4 0 PMPA 1 2 1 No No 1 < x = 2
1774001_at SPBC336.09c.S1 --- 2.45356228988508 --- --- --- --- 4.03942584991455 5.12367391586304 3.41645073890686 1.64635145664215 0.32666015625 0.030273400247097 0.303710997104645 0.303710997104645 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC336.09c /GEN=rrn7 /DEF=RNA polymerase I transcription factor (subunit) (PMID 12095692) --- --- --- --- --- --- SPBC336.09c // |rrn7||RNA polymerase I transcription factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.39550595731276 1.26841638050403 1.26463112465752 -1.18234570278248 -2.45356228988508 Max fold change below threshold 3 2.45356228988508 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
AFFX-r2-Ec-bioB-3_at AFFX-r2-Ec-bioB-3 --- 2.45325459792353 --- --- --- --- 278.859405517578 299.899566650391 113.669166564941 121.296676635742 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2772-3004 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --- --- --- --- --- --- J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioB gene biotin synthetase corresponding to nucleotides 2393-2682 of J04423 /LEN=1114 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-r2-Ec-bioB-3 // E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2772-3004 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// AFFX-r2-Ec-bioB-3 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioB-3 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioB-3 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioB-3 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioB-3 // --- // gb // --- // --- /// AFFX-r2-Ec-bioB-3 // E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2772-3004 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-3 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioB-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-3 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-3 // --- // affx // --- // --- --- AFFX_control No -1.67241469718036 1.07545078529362 -1.73900346386107 -2.45325459792353 -2.29898636345167 Max fold change below threshold 4 2.45325459792353 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-18srRnad_at AFFX-18srRnad --- 2.45206632167461 273.450660705566 339.788101196289 --- --- --- --- 422.006652832031 374.798858642578 172.102462768555 257.569549560547 4.42872878920753E-5 4.42872878920753E-5 4.42872878920753E-5 4.42872878920753E-5 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /GEN=18S rRNA /DB_XREF=gb:Z75578.1 /NOTE=SIF corresponding to nucleotides 1117-1393 of gb:Z75578.1 /DEF=S.cerevisiae 18S rRNA gene. --- --- --- --- --- --- D83552 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:465250-465418(-) /// L10741 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 18S ribosomal RNA, partial. // gb // 0 // chr12:465251-465539(-) /// D23705 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:465250-465418(-) /// L22158 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA (18S rRNA) fragment. // gb // 0 // chr12:465277-465545(-) /// L19742 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA fragment. // gb // 0 // chr12:465277-465547(-) /// D83552 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:456113-456281(-) /// L10741 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 18S ribosomal RNA, partial. // gb // 0 // chr12:456114-456402(-) /// D23705 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:456113-456281(-) /// L22158 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA (18S rRNA) fragment. // gb // 0 // chr12:456140-456408(-) /// L19742 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA fragment. // gb // 0 // chr12:456140-456410(-) --- AFFX_control cerevisiae_gene -1.49228498197331 -1.12595501053666 -1.37471111889182 -2.45206632167461 -1.63841825849383 Max fold change below threshold 4 2.45206632167461 Max fold change at or above threshold 1.019048781673 0.602130655696318 -1.18799326263128 -0.433186174738044 306.619380950928 113.230371260214 0.369286412714845 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 No No 3 < x
1775821_at YJL035C.S1 Subunit of tRNA-specific adenosine-34 deaminase, forms a heterodimer with Tad3p that converts adenosine to inosine at the wobble position of several tRNAs 2.45193946799502 578.274169921875 262.355621337891 TAD2 6400 // tRNA modification // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8251 // tRNA specific adenosine deaminase activity // inferred from direct assay 255.770477294922 529.414611816406 627.133728027344 268.940765380859 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL035C /GEN=TAD2 /DB_XREF=GI:6322425 /SEG=NC_001142:-380165,380917 /DEF=tRNA-specific adenosine-34 deaminase subunit Tad2p /NOTE=Tad2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: tRNA specific adenosine deaminase activity [goid GO:0008251] [evidence IDA] [pmid 10550050]; go_process: tRNA modification [goid GO:0006400] [evidence IDA] [pmid 10550050] --- --- --- --- --- --- S0003572 // TAD2 SGDID:S0003572, Chr X from 380917-380165, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024112 // cdna:Genscan chromosome:SGD1:X:380165:380917:-1 // ensembl // 11 // --- /// GENEFINDER00000024410 // cdna:GeneFinder chromosome:SGD1:X:380165:380899:-1 // ensembl // 11 // --- /// YJL035C // cdna:known chromosome:SGD1:X:380165:380917:-1 gene:YJL035C // ensembl // 11 // --- --- No cerevisiae_gene 1.28862246627436 2.06988162752636 -1.1854334778724 2.45193946799502 1.05149260471822 Max fold change below threshold 4 2.45193946799502 Max fold change at or above threshold -0.88093009079847 0.584092878134785 1.10725684071423 -0.81041962805054 420.314895629883 186.784876636259 0.444392712650224 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771906_at YML026C.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps18Ap and has similarity to E. coli S13 and rat S18 ribosomal proteins /// Protein component of the small (40S) ribosomal subunit; nearly identical to Rps18Bp and has similarity to E. coli S13 and rat S18 ribosomal proteins 2.45188575345671 1429.15100097656 3250.373046875 RPS18B /// RPS18A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 3735 // structural constituent of ribosome // traceable author statement 3435.357421875 1401.10827636719 1457.19372558594 3065.388671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML026C /GEN=RPS18B /DB_XREF=GI:6323615 /SEG=NC_001145:-222987,223828 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps18Ap and has similarity to E. coli S13 and rat S18 ribosomal proteins /NOTE=Rps18bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004488 // RPS18B SGDID:S0004488, Chr XIII from 223828-223782,223380-222987, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YML026C // cdna:known chromosome:SGD1:XIII:222987:223828:-1 gene:YML026C // ensembl // 11 // --- --- No cerevisiae_gene 1.2955116058134 -2.45188575345671 -1.6125207821753 -2.35751593048731 -1.12069228068678 Max fold change below threshold 4 2.45188575345671 Max fold change at or above threshold 1.03112696019014 -0.883420272851524 -0.830635075987719 0.682928388649106 2339.76202392578 1062.52230835589 0.454115545722524 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770954_at YLR363W-A.S1 Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 2.45174713628639 110.841686248779 151.329811096191 --- --- 5634 // nucleus // inferred from direct assay --- 158.087326049805 124.128379821777 97.5549926757813 144.572296142578 0.00122069998178631 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR363W-A /GEN=NMD4 /DB_XREF=GI:13129181 /SEG=NC_001144:+853460,853717 /DEF=Hypothetical ORF identified by homology. See FEBS Letters [2000] 487:31-36. /NOTE=Ylr363w-ap; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007620 // YLR363W-A SGDID:S0007620, Chr XII from 853460-853717, Uncharacterized ORF // sgd // 11 // --- /// YLR363W-A // cdna:known chromosome:SGD1:XII:853460:853717:1 gene:YLR363W-A // ensembl // 11 // --- --- No cerevisiae_gene 2.45174713628639 -1.27357922722254 1.05076815968015 -1.6204944689525 -1.09348284745992 Max fold change below threshold 4 2.45174713628639 Max fold change at or above threshold 1.02455043547643 -0.263991069342139 -1.27229421371263 0.511734847578334 131.085748672485 26.3545614177239 0.201048257988518 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773633_at YBR202W.S1 Component of the hexameric MCM complex, which is important for priming origins of DNA replication in G1 and becomes an active ATP-dependent helicase that promotes DNA melting and elongation when activated by Cdc7p-Dbf4p in S-phase 2.45037325618841 387.288375854492 344.737823486328 CDC47 6267 // pre-replicative complex formation and maintenance // inferred from physical interaction /// 6268 // DNA unwinding // traceable author statement /// 6270 // DNA replication initiation // traceable author statement 5634 // nucleus // inferred from direct assay /// 5656 // pre-replicative complex // inferred from direct assay /// 5737 // cytoplasm // traceable author statement /// 5737 // cytoplasm // inferred from direct assay /// 42555 // MCM complex // inferred from direct assay 3682 // chromatin binding // traceable author statement /// 4003 // ATP-dependent DNA helicase activity // traceable author statement /// 5524 // ATP binding // inferred from direct assay 295.097839355469 340.649444580078 433.927307128906 394.377807617188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR202W /GEN=CDC47 /DB_XREF=GI:6319679 /SEG=NC_001134:+625729,628266 /DEF=Component of the hexameric MCM complex, which is important for priming origins of DNA replication in G1 and becomes an active ATP-dependent helicase that promotes DNA melting and elongation when activated by Cdc7p-Dbf4p in S-phase /NOTE=Cdc47p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10704410]; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 9442876]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10704410]; go_component: pre-replicative complex [goid GO:0005656] [evidence IDA] [pmid 9335335]; go_function: ATP binding [goid GO:0005524] [evidence IDA] [pmid 12480933]; go_function: ATP-dependent DNA helicase activity [goid GO:0004003] [evidence TAS] [pmid 9914182]; go_function: chromatin binding [goid GO:0003682] [evidence TAS] [pmid 9442876]; go_process: DNA replication initiation [goid GO:0006270] [evidence TAS] [pmid 9442876]; go_process: DNA unwinding [goid GO:0006268] [evidence TAS] [pmid 9914182]; go_process: pre-replicative complex formation and maintenance [goid GO:0006267] [evidence IPI] [pmid 9335335] --- --- --- --- --- --- S0000406 // CDC47 SGDID:S0000406, Chr II from 625767-628304, Verified ORF // sgd // 11 // --- /// GENSCAN00000021302 // cdna:Genscan chromosome:SGD1:II:625767:628304:1 // ensembl // 11 // --- /// GENEFINDER00000022153 // cdna:GeneFinder chromosome:SGD1:II:625767:628304:1 // ensembl // 11 // --- /// YBR202W // cdna:known chromosome:SGD1:II:625767:628304:1 gene:YBR202W // ensembl // 11 // --- --- No cerevisiae_gene 2.45037325618841 1.1543610259028 -1.14824430147711 1.47045233566148 1.33643068508586 Max fold change below threshold 4 2.45037325618841 Max fold change at or above threshold -1.16640804656891 -0.4171791974869 1.11704698966254 0.466540254393278 366.01309967041 60.7979861966355 0.166108771110606 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778724_x_at YLR466C-B.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /// Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 2.45002655396215 25.337498664856 17.5852861404419 --- --- --- --- 21.4567680358887 25.1681709289551 25.5068264007568 13.7138042449951 0.0805663987994194 0.0239257998764515 0.030273400247097 0.0239257998764515 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR466C-B /GEN=YRF1-4 /DB_XREF=GI:33438849 /SEG=NC_001144:-1071591,1071707 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ylr466c-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028686 // YLR466C-B SGDID:S0028686, Chr XII from 1071707-1071591, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YLR466C-B // cdna:known chromosome:SGD1:XII:1071591:1071707:-1 gene:YLR466C-B // ensembl // 11 // --- S0028672 // sgd // 6 // Cross Hyb Matching Probes /// YBL109W // ensembl // 3 // Cross Hyb Matching Probes /// YDR544C // ensembl // 3 // Cross Hyb Matching Probes /// YHR217C // ensembl // 3 // Cross Hyb Matching Probes /// YLL066W-B // ensembl // 6 // Cross Hyb Matching Probes /// YNL338W // ensembl // 3 // Cross Hyb Matching Probes No cerevisiae_gene -1.60120865745238 1.17297119896429 -2.45002655396215 1.18875435285007 -1.56461093162529 Max fold change below threshold 4 2.45002655396215 Max fold change at or above threshold -0.000843676739965956 0.676270500369671 0.738055336917898 -1.4134821605476 21.4613924026489 5.48120689026049 0.255398474964931 AAPAPP No 4 0 APPP 1 3 0 No No 2 < x = 3
1778126_at SPCC1183.02.S1 --- 2.44982641818268 --- --- --- --- 0.847446382045746 1.44570195674896 2.076096534729 0.625793039798737 0.995850026607513 0.822998046875 0.725830018520355 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1183.02 /DEF=glutathione S-transferase (predicted) --- --- --- --- --- --- SPCC1183.02 // |||glutathione S-transferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.17012846418423 1.70595094554421 1.15816606109908 2.44982641818268 -1.35419592125585 Max fold change below threshold 0 2.44982641818268 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778194_at YBR038W.S1 Chitin synthase II, requires activation from zymogenic form in order to catalyze the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for the synthesis of chitin in the primary septum during cytokinesis 2.44835337210621 355.242752075195 827.139923095703 CHS2 910 // cytokinesis // inferred from mutant phenotype 5935 // bud neck // inferred from direct assay 4100 // chitin synthase activity // inferred from direct assay 792.421508789063 323.654876708984 386.830627441406 861.858337402344 0.000244141003349796 0.00122069998178631 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR038W /GEN=CHS2 /DB_XREF=GI:6319512 /SEG=NC_001134:+311859,314750 /DEF=chitin synthase 2 /NOTE=Chs2p; go_component: contractile ring (sensu Saccharomyces) [goid GO:0000142] [evidence IDA] [pmid 10652251]; go_function: chitin synthase activity [goid GO:0004100] [evidence IDA] [pmid 9990311]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251]; go_process: response to osmotic stress [goid GO:0006970] [evidence IMP] [pmid 10652251] --- --- --- --- --- S0000242 // span:642-664,677-699,709-731,744-766,776-798,876-896,906-928 // numtm:7 S0000242 // CHS2 SGDID:S0000242, Chr II from 311897-314788, Verified ORF // sgd // 11 // --- /// GENSCAN00000021170 // cdna:Genscan chromosome:SGD1:II:311897:314788:1 // ensembl // 11 // --- /// GENEFINDER00000022401 // cdna:GeneFinder chromosome:SGD1:II:311897:314788:1 // ensembl // 11 // --- /// YBR038W // cdna:known chromosome:SGD1:II:311897:314788:1 gene:YBR038W // ensembl // 11 // --- --- No cerevisiae_gene -1.05490633759547 -2.44835337210621 -1.85311778436034 -2.04849733339455 1.08762612806837 Max fold change below threshold 4 2.44835337210621 Max fold change at or above threshold 0.731394343928068 -0.972392226817654 -0.742772649978209 0.983770532867795 591.191337585449 275.132249619097 0.465386131574248 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779014_at YGL142C.S1 Identified by expression profiling and mass spectrometry /// Integral membrane protein involved in glycosylphosphatidylinositol (GPI) anchor synthesis; putative alpha 1,2 mannosyltransferase required for addition of the third mannose onto the GPI core structure; human PIG-Bp is a functional homolog 2.44834363611606 371.365447998047 841.995574951172 GPI10 6506 // GPI anchor biosynthesis // inferred from mutant phenotype 16021 // integral to membrane // inferred from sequence similarity 30 // mannosyltransferase activity // inferred from mutant phenotype 816.497497558594 333.48974609375 409.241149902344 867.49365234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL142C /GEN=GPI10 /DB_XREF=GI:6321296 /SEG=NC_001139:-236272,238122 /DEF=Integral membrane protein involved in glycosylphosphatidylinositol (GPI) anchor synthesis; putative alpha 1,2 mannosyltransferase required for addition of the third mannose onto the GPI core structure; human PIG-Bp is a functional homolog /NOTE=Gpi10p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 9639537]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: GPI anchor biosynthesis [goid GO:0006506] [evidence IMP] [pmid 9759715] --- --- --- --- --- S0003110 // span:87-109,135-157,202-224,255-272,285-304,334-356,368-390,394-413,426-448 // numtm:9 S0003110 // GPI10 SGDID:S0003110, Chr VII from 238124-236274, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021422 // cdna:GeneFinder chromosome:SGD1:VII:236274:237485:-1 // ensembl // 11 // --- /// YGL142C // cdna:known chromosome:SGD1:VII:236274:238124:-1 gene:YGL142C // ensembl // 11 // --- --- No cerevisiae_gene -1.89314225149076 -2.44834363611606 1.13119137775794 -1.99515004234895 1.06245720891692 Max fold change below threshold 4 2.44834363611606 Max fold change at or above threshold 0.765018439624791 -0.996087003975511 -0.71988810405498 0.950956668405699 606.680511474609 274.263959162724 0.452073132357742 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774845_at YML066C.S1 Protein of unknown function involved in the assembly of the prospore membrane during sporulation 2.44807228862651 24.9974918365479 61.2328186035156 SMA2 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype --- --- 59.4285087585449 25.7193489074707 24.275634765625 63.0371284484863 0.000244141003349796 0.000244141003349796 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML066C /GEN=SMA2 /DB_XREF=GI:6323574 /SEG=NC_001145:-140424,141533 /DEF=Spore Membrane Assembly /NOTE=Sma2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence IMP] [pmid 11470404] --- --- --- --- --- S0004531 // span:7-29,222-244,264-286,319-341 // numtm:4 S0004531 // SMA2 SGDID:S0004531, Chr XIII from 141533-140424, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018661 // cdna:Genscan chromosome:SGD1:XIII:140424:141311:-1 // ensembl // 11 // --- /// YML066C // cdna:known chromosome:SGD1:XIII:140424:141533:-1 gene:YML066C // ensembl // 11 // --- --- No cerevisiae_gene -1.74757575716784 -2.31065370170715 -1.3203885116194 -2.44807228862651 1.06072202997055 Max fold change below threshold 4 2.44807228862651 Max fold change at or above threshold 0.777546016349442 -0.829139138533688 -0.897951119901548 0.949544242085793 43.1151552200317 20.9805634592586 0.486616906565393 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777796_at YOR337W.S1 Ty1 enhancer activator required for full levels of Ty enhancer-mediated transcription; C6 zinc cluster DNA-binding protein 2.44663580233621 103.059555053711 195.296691894531 TEA1 6350 // transcription // inferred from genetic interaction /// 6350 // transcription // inferred from physical interaction 5634 // nucleus // inferred from genetic interaction /// 5634 // nucleus // inferred from physical interaction 3677 // DNA binding // inferred from direct assay 173.604110717773 88.121940612793 117.997169494629 216.989273071289 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR337W /GEN=TEA1 /DB_XREF=GI:6324913 /SEG=NC_001147:+954339,956618 /DEF=Mutants are defective in Ty1 Enhancer-mediated Activation /NOTE=Tea1p; go_component: nucleus [goid GO:0005634] [evidence IGI,IPI] [pmid 8524314]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 8524314]; go_process: transcription [goid GO:0006350] [evidence IGI,IPI] [pmid 8524314] --- --- --- --- --- --- S0005864 // TEA1 SGDID:S0005864, Chr XV from 954339-956618, Verified ORF // sgd // 11 // --- /// GENSCAN00000017788 // cdna:Genscan chromosome:SGD1:XV:954408:956618:1 // ensembl // 11 // --- /// YOR337W // cdna:known chromosome:SGD1:XV:954339:956618:1 gene:YOR337W // ensembl // 11 // --- --- No cerevisiae_gene 2.44663580233621 -1.97004411739624 -1.43980819462897 -1.47125656879147 1.24990861203769 Max fold change below threshold 4 2.44663580233621 Max fold change at or above threshold 0.425307336376125 -1.06311537146951 -0.542925383133927 1.18073341822732 149.178123474121 57.4313799798905 0.384985268901398 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775841_at SPBC18H10.04c.S1 --- 2.4465891235741 --- --- --- --- 12.6199254989624 16.1477432250977 15.7937326431274 6.96354913711548 0.219482004642487 0.466064006090164 0.432372987270355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18H10.04c /GEN=sce3 /DEF=translation initiation factor --- --- --- --- --- --- SPBC18H10.04c // |sce3|tif48|translation initiation factor|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -2.4465891235741 1.27954346691074 -1.1517407773796 1.25149174964828 -1.81228354255427 Max fold change below threshold 4 2.4465891235741 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774703_at YPR082C.S1 17-kDa component of the U4/U6aU5 tri-snRNP, plays an essential role in pre-mRNA splicing, orthologue of the human U5-specific 15-kDa protein 2.44649304679697 942.937377929688 486.017303466797 DIB1 398 // nuclear mRNA splicing, via spliceosome // inferred from mutant phenotype /// 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 31202 // RNA splicing factor activity, transesterification mechanism // inferred from physical interaction 446.426696777344 793.694946289063 1092.17980957031 525.60791015625 0.00585938012227416 0.00585938012227416 0.00805663969367743 0.0107421996071935 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR082C /GEN=DIB1 /DB_XREF=GI:6325339 /SEG=NC_001148:-704221,704652 /DEF=17-kDa component of the U4/U6aU5 tri-snRNP, plays an essential role in pre-mRNA splicing, orthologue of the human U5-specific 15-kDa protein /NOTE=Dib1p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence IDA] [pmid 10377396]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IMP] [pmid 10610776] --- --- --- --- --- --- S0006286 // DIB1 SGDID:S0006286, Chr XVI from 704654-704223, reverse complement, Verified ORF // sgd // 10 // --- /// YPR082C // cdna:known chromosome:SGD1:XVI:704223:704654:-1 gene:YPR082C // ensembl // 10 // --- --- No cerevisiae_gene 1.43219302581056 1.77788414541194 1.39775124055697 2.44649304679697 1.17736666277017 Max fold change below threshold 4 2.44649304679697 Max fold change at or above threshold -0.916790005580716 0.270940998347801 1.29182248354255 -0.645973476309638 714.477340698242 292.379544158653 0.409221577094267 PPPPPP Called_P_>2EXP 4 0 PPPP 0 4 0 Yes Yes 3 < x
1769555_at YGL083W.S1 Putative kinase, suppressor of GTPase mutant, similar to bovine rhodopsin kinase 2.44645847285358 84.4932861328125 197.778106689453 SCY1 --- 30136 // clathrin-coated vesicle // inferred from direct assay --- 197.018692016602 88.4543685913086 80.5322036743164 198.537521362305 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL083W /GEN=SCY1 /DB_XREF=GI:6321355 /SEG=NC_001139:+353059,355473 /DEF=Suppressor of GTPase mutant /NOTE=Scy1p; go_component: clathrin-coated vesicle [goid GO:0030136] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-34 /// hanks // 1.1.4 // AGC group; AGC I Cyclic nucleotide regulated protein kinase (PKA & PKG); EcAPKa // 9.0E-38 scop // a.2.1.GreA transcript cleavage protein, N-terminal domain // All alpha proteins; Long alpha-hairpin; GreA transcript cleavage protein, N-terminal domain; GreA transcript cleavage protein, N-terminal domain // 3.0 --- S0003051 // SCY1 SGDID:S0003051, Chr VII from 353061-355475, Verified ORF // sgd // 11 // --- /// GENSCAN00000019288 // cdna:Genscan chromosome:SGD1:VII:353061:355475:1 // ensembl // 11 // --- /// GENEFINDER00000021704 // cdna:GeneFinder chromosome:SGD1:VII:353907:355475:1 // ensembl // 11 // --- /// YGL083W // cdna:known chromosome:SGD1:VII:353061:355475:1 gene:YGL083W // ensembl // 11 // --- --- No cerevisiae_gene -1.15392270914006 -2.22734835095483 -1.34769134132573 -2.44645847285358 1.0077090621715 Max fold change below threshold 4 2.44645847285358 Max fold change at or above threshold 0.853333502252386 -0.804444026035665 -0.925415506909112 0.876526030692391 141.135696411133 65.4878725117024 0.464006443280899 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777689_at YOR307C.S1 Protein involved in ER-to-Golgi transport 2.44419098379253 535.080200195313 1310.88195800781 SLY41 6888 // ER to Golgi transport // inferred from genetic interaction 5783 // endoplasmic reticulum // inferred from direct assay --- 1210.51049804688 495.260192871094 574.900207519531 1411.25341796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR307C /GEN=SLY41 /DB_XREF=GI:6324883 /SEG=NC_001147:-892726,894087 /DEF=multicopy suppressor of ypt1 deletion /NOTE=Sly41p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IGI] [pmid 1903839] --- --- --- --- --- S0005834 // span:113-135,174-196,206-228,235-257,267-289,334-353,373-395,416-438 // numtm:8 S0005834 // SLY41 SGDID:S0005834, Chr XV from 894087-892726, reverse complement, Verified ORF // sgd // 11 // --- /// YOR307C // cdna:known chromosome:SGD1:XV:892726:894087:-1 gene:YOR307C // ensembl // 11 // --- --- No cerevisiae_gene -1.71895770843127 -2.44419098379253 1.01561125082211 -2.10560108035054 1.1658332746769 Max fold change below threshold 4 2.44419098379253 Max fold change at or above threshold 0.629850423882264 -0.93694823466672 -0.762492009740919 1.06958982052538 922.981079101563 456.504287435488 0.494597665945495 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769776_at YHR005C.S1 GTP-binding alpha subunit of the heterotrimeric G protein that couples to pheromone receptors; negatively regulates the mating pathway by sequestering G(beta)gamma and by triggering an adaptive response; activates the pathway via Scp160p 2.44391015562016 98.2985916137695 178.968566894531 GPA1 750 // signal transduction during conjugation with cellular fusion // inferred from mutant phenotype 5834 // heterotrimeric G-protein complex // traceable author statement /// 5886 // plasma membrane // inferred from direct assay 3924 // GTPase activity // traceable author statement 202.485336303711 113.744163513184 82.8530197143555 155.451797485352 0.000732421991415322 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR005C /GEN=GPA1 /DB_XREF=GI:6321792 /SEG=NC_001140:-113493,114911 /DEF=Involved in the mating pheromone signal transduction pathway; component of pheromone response pathway common to both a and alpha cells. /NOTE=Gpa1p; go_component: heterotrimeric G-protein complex [goid GO:0005834] [evidence TAS]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 8756677]; go_function: GTPase activity [goid GO:0003924] [evidence TAS]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence IMP] [pmid 3113739] --- --- --- --- --- --- S0001047 // GPA1 SGDID:S0001047, Chr VIII from 114911-113493, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016557 // cdna:Genscan chromosome:SGD1:VIII:113493:114911:-1 // ensembl // 11 // --- /// GENEFINDER00000020226 // cdna:GeneFinder chromosome:SGD1:VIII:113493:114911:-1 // ensembl // 11 // --- /// YHR005C // cdna:known chromosome:SGD1:VIII:113493:114911:-1 gene:YHR005C // ensembl // 11 // --- --- No cerevisiae_gene 1.24036887798483 -1.78018220935127 -1.01936709126216 -2.44391015562016 -1.30256027642776 Max fold change below threshold 4 2.44391015562016 Max fold change at or above threshold 1.22952204427005 -0.479267709090102 -1.07410399909062 0.323849663910675 138.63357925415 51.9321775051772 0.374600279272689 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776413_at YDR464W.S1 appears to control expression of spliceosome components PRP4 and PRP3; negative regulator of prp genes 2.44319500902967 219.80542755127 459.425384521484 SPP41 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction 5634 // nucleus // inferred from direct assay --- 409.127014160156 167.45573425293 272.155120849609 509.723754882813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR464W /GEN=SPP41 /DB_XREF=GI:6320672 /SEG=NC_001136:+1388860,1393167 /DEF=appears to control expression of spliceosome components PRP4 and PRP3 /NOTE=Spp41p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IGI] [pmid 8005438] --- --- --- --- --- --- S0002872 // SPP41 SGDID:S0002872, Chr IV from 1388862-1393169, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023646 // cdna:GeneFinder chromosome:SGD1:IV:1388862:1393169:1 // ensembl // 11 // --- /// GENSCAN00000025464 // cdna:Genscan chromosome:SGD1:IV:1388862:1393169:1 // ensembl // 11 // --- /// YDR464W // cdna:known chromosome:SGD1:IV:1388862:1393169:1 gene:YDR464W // ensembl // 11 // --- YDR464C-A // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene -1.20308743653655 -2.44319500902967 1.2291823216503 -1.5032861144885 1.24588144327052 Max fold change below threshold 4 2.44319500902967 Max fold change at or above threshold 0.461844621048429 -1.14385237977897 -0.448215351203238 1.13022310993378 339.615406036377 150.508645020011 0.443173785243092 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772140_at SPAC227.11c.S1 --- 2.44285395022899 --- --- --- --- 0.571061849594116 0.451418489217758 1.320765376091 0.233768314123154 0.828612983226776 0.780517995357513 0.665526986122131 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC227.11c /DEF=glycoprotein (predicted) (PMID 12077121) --- --- --- --- --- --- SPAC227.11c // |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.01644757058009 -1.26503867970424 1.44181567605639 2.31282369331753 -2.44285395022899 Max fold change below threshold 0 2.44285395022899 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777898_at YHR039C.S1 Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum; msc7 mutants are defective in directing meiotic recombination events to homologous chromatids 2.4426328213929 1523.36083984375 3457.41735839844 MSC7 7131 // meiotic recombination // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay --- 3713.63647460938 1526.38000488281 1520.34167480469 3201.1982421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR039C /GEN=MSC7 /DB_XREF=GI:6321828 /SEG=NC_001140:-184867,186801 /DEF=Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum; msc7 mutants are defective in directing meiotic recombination events to homologous chromatids /NOTE=Msc7p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiotic recombination [goid GO:0007131] [evidence IMP] [pmid 10511544] --- --- --- --- --- S0001081 // span:46-68 // numtm:1 S0001081 // MSC7 SGDID:S0001081, Chr VIII from 186801-184867, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016586 // cdna:Genscan chromosome:SGD1:VIII:184867:186801:-1 // ensembl // 11 // --- /// GENEFINDER00000020237 // cdna:GeneFinder chromosome:SGD1:VIII:184867:186801:-1 // ensembl // 11 // --- /// YHR039C // cdna:known chromosome:SGD1:VIII:184867:186801:-1 gene:YHR039C // ensembl // 11 // --- --- No cerevisiae_gene -1.30965400325109 -2.4329698127135 -1.1731261380983 -2.4426328213929 -1.16007700668725 Max fold change below threshold 4 2.4426328213929 Max fold change at or above threshold 1.0767464607966 -0.848555575263323 -0.853870731192554 0.625679845659274 2490.38909912109 1136.05887739189 0.456177260731196 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775837_at YNL025C.S1 Component of RNA polymerase II holoenzyme, involved in RNA pol II carboxy-terminal domain phosphorylation 2.44260591784362 167.605590820313 190.385986328125 SSN8 122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 7126 // meiosis // inferred from genetic interaction /// 7126 // meiosis // inferred from mutant phenotype 5667 // transcription factor complex // traceable author statement 16251 // general RNA polymerase II transcription factor activity // traceable author statement /// 16538 // cyclin-dependent protein kinase regulator activity // traceable author statement 169.049057006836 140.362838745117 194.848342895508 211.722915649414 0.000732421991415322 0.00122069998178631 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL025C /GEN=SSN8 /DB_XREF=GI:6324303 /SEG=NC_001146:-584318,585289 /DEF=Component of RNA polymerase II holoenzyme, involved in RNA pol II carboxy-terminal domain phosphorylation. Activity of the kinase (SSN3)/cyclin (SSN8) pair required, along with SSN6 & TUP1, for transcriptional repression of a-specific genes /NOTE=Ssn8p; go_component: transcription factor complex [goid GO:0005667] [evidence TAS] [pmid 9774381]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS] [pmid 9774381]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9774381]; go_process: meiosis [goid GO:0007126] [evidence IGI,IMP] [pmid 12455972]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence TAS] [pmid 9774381] --- --- --- --- --- --- S0004970 // SSN8 SGDID:S0004970, Chr XIV from 585290-584319, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020016 // cdna:Genscan chromosome:SGD1:XIV:584319:585290:-1 // ensembl // 11 // --- /// YNL025C // cdna:known chromosome:SGD1:XIV:584319:585290:-1 gene:YNL025C // ensembl // 11 // --- --- No cerevisiae_gene 1.23153421232753 -1.20437188730423 2.44260591784362 1.15261419581671 1.25243476300996 Max fold change below threshold 4 2.44260591784362 Max fold change at or above threshold -0.319161402789334 -1.239617896373 0.508661909764193 1.05011738939814 178.995788574219 31.1652082001541 0.174111404790017 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778622_at YDL210W.S1 Permease that serves as a gamma-aminobutyrate (GABA) transport protein involved in the utilization of GABA as a nitrogen source; catalyzes the transport of putrescine and delta-aminolevulinic acid (ALA); localized to the vacuolar membrane 2.44203886456437 185.112739562988 84.3332023620605 UGA4 6810 // transport // traceable author statement /// 15847 // putrescine transport // inferred from direct assay 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay 15489 // putrescine transporter activity // inferred from direct assay /// 15495 // gamma-aminobutyric acid:hydrogen symporter activity // inferred from sequence similarity 94.6794967651367 161.170867919922 209.054611206055 73.9869079589844 0.00292969006113708 0.000732421991415322 0.000244141003349796 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL210W /GEN=UGA4 /DB_XREF=GI:6319991 /SEG=NC_001136:+84271,85986 /DEF=GABA-specific transport protein /NOTE=Uga4p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14985124]; go_function: gamma-aminobutyric acid transporter activity [goid GO:0005331] [evidence ISS] [pmid 8455553]; go_function: putrescine transporter activity [goid GO:0015489] [evidence IDA] [pmid 14985124]; go_process: putrescine transport [goid GO:0015847] [evidence IDA] [pmid 14985124]; go_process: transport [goid GO:0006810] [evidence TAS] [pmid 9416005] --- --- --- --- --- AAN75288.1 // span:79-101,111-133,154-176,201-223,230-249,274-293,314-336,364-386,391-413 // numtm:9 /// S0002369 // span:79-101,111-133,154-176,201-223,230-249,274-293,314-336,365-387,414-436,481-503,516-533 // numtm:11 S0002369 // UGA4 SGDID:S0002369, Chr IV from 84271-85986, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023525 // cdna:GeneFinder chromosome:SGD1:IV:84271:85986:1 // ensembl // 11 // --- /// GENSCAN00000024947 // cdna:Genscan chromosome:SGD1:IV:84271:85986:1 // ensembl // 11 // --- /// YDL210W // cdna:known chromosome:SGD1:IV:84271:85986:1 gene:YDL210W // ensembl // 11 // --- AY169693 // gb // 1 // Cross Hyb Matching Probes No cerevisiae_gene -2.44203886456437 1.70227845971472 -1.07716541406507 2.20802410604947 -1.27967905913332 Max fold change below threshold 4 2.44203886456437 Max fold change at or above threshold -0.646282012448724 0.426856071139262 1.19967617715691 -0.980250235847445 134.722970962524 61.9597535225611 0.459904892832242 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776986_at SPAC1F8.01.S1 --- 2.4412968695512 --- --- --- --- 7.32062530517578 11.6011447906494 8.16871929168701 2.99866247177124 0.149657994508743 0.0461426004767418 0.018554700538516 0.194580003619194 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F8.01 /GEN=ght3 /DEF=hexose transporter (PMID 10735857) --- --- --- --- --- --- SPAC1F8.01 // |ght3||hexose transporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.02924138447017 1.58472047223169 -2.26579368160495 1.11584993783408 -2.4412968695512 Max fold change below threshold 4 2.4412968695512 Max fold change at or above threshold APPPPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1770756_at SPAC23C4.02.S1 --- 2.43991138892623 --- --- --- --- 9.77903079986572 7.07670450210571 6.00932264328003 4.00794506072998 0.149657994508743 0.129638999700546 0.334473013877869 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C4.02 /GEN=crn1 /DEF=WD repeat protein --- --- --- --- --- --- SPAC23C4.02 // |crn1||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.32836165563441 -1.38186224915226 -2.10207275644597 -1.62730999487957 -2.43991138892623 Max fold change below threshold 4 2.43991138892623 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773716_at YCL048W.S1 Protein of unknown function, redundant with Sps2p for the organization of the beta-glucan layer of the spore wall 2.43940057513604 20.0918846130371 20.799750328064 SPS22 7047 // cell wall organization and biogenesis // inferred from sequence similarity /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 5886 // plasma membrane // inferred from sequence similarity --- 18.4243202209473 22.2534713745117 17.9302978515625 23.1751804351807 0.000732421991415322 0.017578125 0.000244141003349796 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL048W /GEN=APA1 /DB_XREF=GI:6319801 /SEG=NC_001135:+42165,43556 /DEF=Hypothetical ORF /NOTE=Ycl048wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000553 // span:9-28 // numtm:1 S0000553 // YCL048W SGDID:S0000553, Chr III from 42165-43556, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022429 // cdna:Genscan chromosome:SGD1:III:42165:43556:1 // ensembl // 11 // --- /// YCL048W // cdna:known chromosome:SGD1:III:42165:43556:1 gene:YCL048W // ensembl // 11 // --- --- No cerevisiae_gene -2.43940057513604 1.20783133964481 1.07405071612326 -1.02755237941247 1.25785810044877 Max fold change below threshold 4 2.43940057513604 Max fold change at or above threshold -0.761676257547232 0.681102613807666 -0.947818044052978 1.02839168779254 20.4458174705505 2.65401110980267 0.129807043109204 PMPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1779953_at SPBC16E9.02c.S1 --- 2.43884326344332 --- --- --- --- 6.49210119247437 7.47378349304199 5.23641729354858 2.66195917129517 0.0952147990465164 0.194580003619194 0.0375977009534836 0.0107421996071935 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16E9.02c /DEF=CUE domain protein --- --- --- --- --- --- SPBC16E9.02c // |||CUE domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.98112644445524 1.15121179899438 -2.01798230272129 -1.23979828736583 -2.43884326344332 Max fold change below threshold 4 2.43884326344332 Max fold change at or above threshold APAAPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1771094_at SPBC1773.09c.S1 --- 2.43877493161217 --- --- --- --- 3.15777802467346 6.43525886535645 7.70110988616943 5.2884955406189 0.274170011281967 0.124755859375 0.014160200022161 0.129638999700546 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1773.09c /DEF=DNAJ domain protein --- --- --- --- --- --- SPBC1773.09c // |||DNAJ domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.23229513795009 2.03790729274642 1.60809550641499 2.43877493161217 1.67475215144857 Max fold change below threshold 4 2.43877493161217 Max fold change at or above threshold APAMPA No 4 0 AAPA 3 1 0 No No x = 1
1771640_at SPAC12G12.12.S1 --- 2.43825351463262 --- --- --- --- 4.09943056106567 9.99545097351074 5.59234094619751 2.92137026786804 0.171387001872063 0.171387001872063 0.149657994508743 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12G12.12 /DEF=NST UDP-galactose transporter --- --- --- --- --- --- SPAC12G12.12 // |||NST UDP-galactose transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.17607462086287 2.43825351463262 1.46130132512842 1.36417506355901 -1.4032560699871 Max fold change below threshold 4 2.43825351463262 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773891_at YOR033C.S1 5'-3' exonuclease and flap-endonuclease involved in recombination, double-strand break repair and DNA mismatch repair; member of the Rad2p nuclease family, with conserved N and I nuclease domains 2.43802879250858 351.409393310547 854.002593994141 EXO1 6298 // mismatch repair // inferred from mutant phenotype 5634 // nucleus // inferred from physical interaction 4527 // exonuclease activity // traceable author statement /// 8409 // 5'-3' exonuclease activity // inferred from direct assay /// 17108 // 5'-flap endonuclease activity // inferred from direct assay 807.7587890625 371.50244140625 331.316345214844 900.246398925781 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR033C /GEN=EXO1 /DB_XREF=GI:6324607 /SEG=NC_001147:-392415,394523 /DEF=5'-3' exonuclease and flap-endonuclease involved in recombination, double-strand break repair and DNA mismatch repair; member of the Rad2p nuclease family, with conserved N and I nuclease domains /NOTE=Exo1p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 11438669]; go_function: 5'-3' exonuclease activity [goid GO:0008409] [evidence IDA] [pmid 12531018]; go_function: 5'-flap endonuclease activity [goid GO:0017108] [evidence IDA] [pmid 12531018]; go_function: exonuclease activity [goid GO:0004527] [evidence TAS] [pmid 11438669]; go_process: mismatch repair [goid GO:0006298] [evidence IMP] [pmid 11438669] --- --- --- --- --- --- S0005559 // EXO1 SGDID:S0005559, Chr XV from 394523-392415, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017488 // cdna:Genscan chromosome:SGD1:XV:392415:394523:-1 // ensembl // 11 // --- /// GENEFINDER00000022619 // cdna:GeneFinder chromosome:SGD1:XV:392415:394139:-1 // ensembl // 11 // --- /// YOR033C // cdna:known chromosome:SGD1:XV:392415:394523:-1 gene:YOR033C // ensembl // 11 // --- --- No cerevisiae_gene -1.23172146829115 -2.17430277444446 -1.38377728186247 -2.43802879250858 1.11449904490748 Max fold change below threshold 4 2.43802879250858 Max fold change at or above threshold 0.699652333422424 -0.78888027105882 -0.925997621325691 1.01522555896209 602.705993652344 293.078126970746 0.486270470274768 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774151_at YNL219C.S1 Mannosyltransferase, involved in N-linked glycosylation; catalyzes the transfer of mannose from Dol-P-Man to lipid-linked oligosaccharides; mutation of the human ortholog causes type 1 congenital disorders of glycosylation 2.43652383947051 1237.26507568359 2871.22412109375 ALG9 6486 // protein amino acid glycosylation // inferred from mutant phenotype /// 6488 // dolichol-linked oligosaccharide biosynthesis // traceable author statement 5783 // endoplasmic reticulum // inferred from mutant phenotype /// 5783 // endoplasmic reticulum // inferred from sequence similarity 30 // mannosyltransferase activity // inferred from mutant phenotype /// 30 // mannosyltransferase activity // inferred from sequence similarity 2869.36938476563 1177.64880371094 1296.88134765625 2873.07885742188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL219C /GEN=ALG9 /DB_XREF=GI:6324110 /SEG=NC_001146:-235995,237662 /DEF=catalyzes the transfer of mannose from Dol-P-Man to lipid-linked oligosaccharides /NOTE=Alg9p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IMP,ISS] [pmid 8692962]; go_function: mannosyltransferase activity [goid GO:0000030] [evidence IMP,ISS] [pmid 8692962]; go_process: dolichol-linked oligosaccharide biosynthesis [goid GO:0006488] [evidence TAS] [pmid 10336995]; go_process: protein amino acid glycosylation [goid GO:0006486] [evidence IMP] [pmid 8692962] --- --- --- --- --- S0005163 // span:111-129,133-152,173-195,205-227,272-294,317-339,352-374 // numtm:7 S0005163 // ALG9 SGDID:S0005163, Chr XIV from 237662-235995, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019865 // cdna:Genscan chromosome:SGD1:XIV:235995:236576:-1 // ensembl // 10 // --- /// GENEFINDER00000020523 // cdna:GeneFinder chromosome:SGD1:XIV:235995:236576:-1 // ensembl // 10 // --- /// YNL219C // cdna:known chromosome:SGD1:XIV:235995:237662:-1 gene:YNL219C // ensembl // 11 // --- --- No cerevisiae_gene -1.58780527131749 -2.43652383947051 1.09664860791817 -2.2125149613349 1.00129278324218 Max fold change below threshold 4 2.43652383947051 Max fold change at or above threshold 0.86291025825259 -0.927984912507239 -0.801762538942484 0.866837193197132 2054.24459838867 944.62289511727 0.45983954192126 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770393_at YOR302W.S1 CPA1 uORF , Arginine attenuator peptide, regulates translation of the CPA1 mRNA 2.4365090831209 1099.41436767578 1887.04895019531 --- 6417 // regulation of protein biosynthesis // inferred from direct assay 5829 // cytosol // inferred from curator 45182 // translation regulator activity // inferred from direct assay 1877.52416992188 770.57958984375 1428.24914550781 1896.57373046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR302W /GEN=RAX1 /DB_XREF=GI:6324877 /SEG=NC_001147:+882761,882838 /DEF=CPA1 uORF , Arginine attenuator peptide, regulates translation of the CPA1 mRNA /NOTE=Yor302wp; go_component: cytosol [goid GO:0005829] [evidence IC] [pmid 10608810]; go_function: translation regulator activity [goid GO:0045182] [evidence IDA] [pmid 10608810]; go_process: regulation of protein biosynthesis [goid GO:0006417] [evidence IDA] [pmid 10608810] --- --- --- --- --- --- S0005828 // YOR302W SGDID:S0005828, Chr XV from 882761-882838, Verified ORF // sgd // 11 // --- /// YOR302W // cdna:known chromosome:SGD1:XV:882761:882838:1 gene:YOR302W // ensembl // 11 // --- --- No cerevisiae_gene 1.99114226303938 -2.4365090831209 -1.01215573086531 -1.31456348202773 1.01014610669309 Max fold change below threshold 4 2.4365090831209 Max fold change at or above threshold 0.727625652500543 -1.36828110949707 -0.123038941385102 0.763694398381624 1493.23165893555 528.145908085671 0.353693216270381 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773036_at SPCC364.07.S1 --- 2.43626693803443 --- --- --- --- 13.0870456695557 10.521936416626 10.5556488037109 7.02434587478638 0.00415039015933871 0.24609400331974 0.149657994508743 0.0107421996071935 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC364.07 /DEF=D-3 phosphoglycerate dehydrogenase (predicted) --- --- --- --- --- --- SPCC364.07 // ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.43626693803443 -1.24378680419286 1.00137049669738 -1.23981442665607 -1.86309813082114 Max fold change below threshold 4 2.43626693803443 Max fold change at or above threshold PAAPAP No 3 0 PAAP 2 2 0 No No 1 < x = 2
1776859_at YDL014W.S1 Nucleolar protein, component of the small subunit processome complex, which is required for processing of pre-18S rRNA; has similarity to mammalian fibrillarin 2.43605385874909 902.939636230469 1532.41583251953 NOP1 27 // ribosomal large subunit assembly and maintenance // traceable author statement /// 154 // rRNA modification // traceable author statement /// 1510 // RNA methylation // inferred from mutant phenotype /// 1510 // RNA methylation // inferred from sequence similarity /// 1510 // RNA methylation // inferred from physical interaction /// 6365 // 35S primary transcript processing // traceable author statement /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5730 // nucleolus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 30532 // small nuclear ribonucleoprotein complex // traceable author statement 8168 // methyltransferase activity // inferred from physical interaction /// 8168 // methyltransferase activity // inferred from mutant phenotype /// 8168 // methyltransferase activity // inferred from sequence similarity 1487.01684570313 777.873046875 1028.00622558594 1577.81481933594 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL014W /GEN=NOP1 /DB_XREF=GI:6320190 /SEG=NC_001136:+427361,428344 /DEF=Nucleolar protein, component of the small subunit processome complex, which is required for processing of pre-18S rRNA; has similarity to mammalian fibrillarin /NOTE=Nop1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11932453]; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence TAS] [pmid 10690410]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: methyltransferase activity [goid GO:0008168] [evidence IMP,IPI,ISS] [pmid 12215523]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: RNA methylation [goid GO:0001510] [evidence IMP,IPI,ISS] [pmid 12215523]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IPI] [pmid 12068309]; go_process: rRNA modification [goid GO:0000154] [evidence TAS] [pmid 10690410]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0002172 // NOP1 SGDID:S0002172, Chr IV from 427361-428344, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023677 // cdna:GeneFinder chromosome:SGD1:IV:427361:428344:1 // ensembl // 11 // --- /// GENSCAN00000025089 // cdna:Genscan chromosome:SGD1:IV:427361:428344:1 // ensembl // 11 // --- /// YDL014W // cdna:known chromosome:SGD1:IV:427361:428344:1 gene:YDL014W // ensembl // 11 // --- --- No cerevisiae_gene 2.43605385874909 -1.91164464648443 -1.43936238933144 -1.44650568128181 1.06106048757631 Max fold change below threshold 4 2.43605385874909 Max fold change at or above threshold 0.71006209599361 -1.15946264430054 -0.500033390683311 0.949433938990238 1217.677734375 379.317686224655 0.311509092690562 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772301_at SPAC27E2.07.S1 --- 2.43604466794598 --- --- --- --- 9.6997127532959 4.31326389312744 8.38695812225342 6.07739448547363 0.0952147990465164 0.334473013877869 0.0805663987994194 0.030273400247097 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27E2.07 /GEN=pvg2 /DEF=glycosyltransferase (predicted) --- --- --- --- --- --- SPAC27E2.07 // |pvg2||glycosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.43604466794598 -2.24881041216861 -1.21325081322176 -1.15652333204804 -1.59603145336055 Max fold change below threshold 4 2.43604466794598 Max fold change at or above threshold AAAPAP No 4 0 AAAP 3 1 0 No No x = 1
1776467_at YHL033C.S1 Ribosomal protein L4 of the large (60S) ribosomal subunit, nearly identical to Rpl8Ap and has similarity to rat L7a ribosomal protein; mutation results in decreased amounts of free 60S subunits /// Ribosomal protein L4 of the large (60S) ribosomal subunit, nearly identical to Rpl8Bp and has similarity to rat L7a ribosomal protein; mutation results in decreased amounts of free 60S subunits 2.43551710225442 2090.66357421875 4161.59265136719 RPL8B /// RPL8A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 4477.2998046875 1838.33642578125 2342.99072265625 3845.88549804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL033C /GEN=RPL8A /DB_XREF=GI:6321754 /SEG=NC_001140:-35253,36023 /DEF=Ribosomal protein L4 of the large (60S) ribosomal subunit, nearly identical to Rpl8Bp and has similarity to rat L7a ribosomal protein; mutation results in decreased amounts of free 60S subunits /NOTE=Rpl8ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0001025 // RPL8A SGDID:S0001025, Chr VIII from 36023-35253, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016523 // cdna:Genscan chromosome:SGD1:VIII:35253:36023:-1 // ensembl // 11 // --- /// GENEFINDER00000020281 // cdna:GeneFinder chromosome:SGD1:VIII:35253:36023:-1 // ensembl // 11 // --- /// YHL033C // cdna:known chromosome:SGD1:VIII:35253:36023:-1 gene:YHL033C // ensembl // 11 // --- --- No cerevisiae_gene 1.02310854124157 -2.43551710225442 -1.86394999224498 -1.91093364621247 -1.16417917459095 Max fold change below threshold 4 2.43551710225442 Max fold change at or above threshold 1.08934441453069 -1.03824605691545 -0.631382633956315 0.580284276341072 3126.12811279297 1240.35307279437 0.396769750963982 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775206_at SPBC1718.04.S1 --- 2.4354716080705 --- --- --- --- 1.36153507232666 1.48268294334412 0.892666161060333 0.559043705463409 0.805419981479645 0.850341975688934 0.919434010982513 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1718.04 /DEF=phosphate acyltransferase (SMART) --- --- --- --- --- --- SPBC1718.04 // |||phosphate acyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.70013984294723 1.08897888382003 1.44983129890388 -1.52524553043367 -2.4354716080705 Max fold change below threshold 0 2.4354716080705 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778377_at SPBC2G2.17c.S1 --- 2.4348386367238 --- --- --- --- 4.70604133605957 8.35048198699951 11.4584512710571 5.03584480285645 0.0952147990465164 0.0952147990465164 0.030273400247097 0.0952147990465164 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G2.17c /DEF=beta-glucosidase (predicted) --- --- --- --- --- --- SPBC2G2.17c // |||beta-glucosidase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.48543684644315 1.77441747547238 1.03834665209756 2.4348386367238 1.07008086908838 Max fold change below threshold 4 2.4348386367238 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1777078_at SPAC694.03.S1 --- 2.4347334068683 --- --- --- --- 1.22212421894073 0.551867604255676 0.501954019069672 0.719117343425751 0.533936023712158 0.943848013877869 0.999267995357513 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC694.03 /DEF=conserved fungal protein --- --- --- --- --- --- SPAC694.03 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.71540404376322 -2.21452429806794 -2.23088681371875 -2.4347334068683 -1.69947815904251 Max fold change below threshold 0 2.4347334068683 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770974_at YNR004W.S1 Hypothetical protein 2.43465987665375 87.1472778320313 59.3682880401611 --- --- 5730 // nucleolus // inferred from direct assay --- 48.038501739502 77.0181655883789 97.2763900756836 70.6980743408203 0.00585938012227416 0.00292969006113708 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR004W /GEN=RPC34 /DB_XREF=GI:6324331 /SEG=NC_001146:+635942,636382 /DEF=Hypothetical ORF /NOTE=Ynr004wp; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.1.DNA-binding domain of rap1 // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; DNA-binding domain of rap1 // 3.40000009536743 --- S0005287 // YNR004W SGDID:S0005287, Chr XIV from 635943-636383, Uncharacterized ORF // sgd // 11 // --- /// YNR004W // cdna:known chromosome:SGD1:XIV:635943:636383:1 gene:YNR004W // ensembl // 11 // --- --- No cerevisiae_gene 2.43465987665375 1.60325911091118 1.71539136210936 2.0249671940891 1.47169607254186 Max fold change below threshold 4 2.43465987665375 Max fold change at or above threshold -1.24367374081705 0.185441017276082 1.18446321913964 -0.12623049559867 73.2577829360962 20.2780523290827 0.276804067996045 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1776044_at YGL158W.S1 Protein kinase involved in the response to oxidative stress; identified as suppressor of S. pombe cell cycle checkpoint mutations 2.43448716808684 136.354652404785 135.305011749268 RCK1 6468 // protein amino acid phosphorylation // inferred from sequence similarity /// 40020 // regulation of meiosis // inferred from genetic interaction /// 40020 // regulation of meiosis // inferred from mutant phenotype --- 4674 // protein serine/threonine kinase activity // inferred from sequence similarity 124.493095397949 129.290145874023 143.419158935547 146.116928100586 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL158W /GEN=RCK1 /DB_XREF=GI:6321280 /SEG=NC_001139:+207036,208574 /DEF=Serine/threonine protein kinase /NOTE=Rck1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence ISS] [pmid 10778743]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence ISS] [pmid 10778743]; go_process: regulation of meiosis [goid GO:0040020] [evidence IGI,IMP] [pmid 10778743] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-58 /// hanks // 2.1.6 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; CamKI // 4.0E-74 --- --- S0003126 // RCK1 SGDID:S0003126, Chr VII from 207038-208576, Verified ORF // sgd // 11 // --- /// GENSCAN00000019230 // cdna:Genscan chromosome:SGD1:VII:207038:208576:1 // ensembl // 11 // --- /// GENEFINDER00000021487 // cdna:GeneFinder chromosome:SGD1:VII:207038:208576:1 // ensembl // 11 // --- /// YGL158W // cdna:known chromosome:SGD1:VII:207038:208576:1 gene:YGL158W // ensembl // 11 // --- --- No cerevisiae_gene 1.80277099044042 1.03853266288175 2.43448716808684 1.15202500570091 1.17369503612642 Max fold change below threshold 4 2.43448716808684 Max fold change at or above threshold -1.07328111012363 -0.619130695764782 0.718503162452127 0.973908643436283 135.829832077026 10.5626909596604 0.0777641464922855 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773746_at SPBC1703.15c.S1 --- 2.43432518578394 --- --- --- --- 4.58243417739868 7.67431354522705 5.53782367706299 1.88242483139038 0.0952147990465164 0.171387001872063 0.303710997104645 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1703.15c /GEN=vps33 /DEF=sec1 family --- --- --- --- --- --- SPBC1703.15c // |vps33|SPBC2A9.01c|sec1 family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.06448123373589 1.6747242291178 1.43774290298469 1.20848951947339 -2.43432518578394 Max fold change below threshold 3 2.43432518578394 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1776402_at YMR181C.S1 Protein of unknown function; open reading frame may be part of a bicistronic transcript with RGM1 2.43399307718536 4293.31555175781 1966.40753173828 --- --- --- --- 1847.69641113281 4089.35083007813 4497.2802734375 2085.11865234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR181C /GEN=CTL1 /DB_XREF=GI:6323835 /SEG=NC_001145:-623615,624079 /DEF=Protein of unknown function; open reading frame may be part of a bicistronic transcript with RGM1 /NOTE=Ymr181cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.2.Methylated DNA-protein cysteine methyltransferase, C-termi // All alpha proteins; DNA/RNA-binding 3-helical bundle; Methylated DNA-protein cysteine methyltransferase, C-terminal domain; Methylated DNA-protein cysteine methyltransferase, C-terminal domain // 6.0 --- S0004793 // YMR181C SGDID:S0004793, Chr XIII from 624079-623615, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018866 // cdna:Genscan chromosome:SGD1:XIII:623615:624049:-1 // ensembl // 10 // --- /// YMR181C // cdna:known chromosome:SGD1:XIII:623615:624079:-1 gene:YMR181C // ensembl // 11 // --- --- No cerevisiae_gene 1.0126959449679 2.21321576717842 1.12140321474249 2.43399307718536 1.12849634809074 Max fold change below threshold 4 2.43399307718536 Max fold change at or above threshold -0.94472088878674 0.7069678870596 1.00753717964973 -0.769784177922587 3129.86154174805 1357.18935172679 0.433626003458541 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777466_at SPAC31G5.02.S1 --- 2.43397147225989 --- --- --- --- 0.908304691314697 0.665826678276062 1.00082790851593 0.46026599407196 0.805419981479645 0.753906011581421 0.696289002895355 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31G5.02 /DEF=conserved fungal protein --- --- --- --- --- --- SPAC31G5.02 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.06508783092449 -1.36417587481843 -2.43397147225989 1.10186363462167 -1.97343428150959 Max fold change below threshold 0 2.43397147225989 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774733_at SPBPJ4664.06.S1 --- 2.43314508895315 --- --- --- --- 12.9113740921021 10.5247945785522 8.28060150146484 5.47857141494751 0.303710997104645 0.219482004642487 0.24609400331974 0.064208984375 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPJ4664.06 /GEN=gpt1 /DEF=glycosyl transferase family 8 --- --- --- --- --- --- SPBPJ4664.06 // |gpt1||UDP-glucose-glycoprotein glucosyltransferase Gpt1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.76087213821276 -1.22675782370264 -2.43314508895315 -1.55923142658393 -2.35670453375403 Max fold change below threshold 4 2.43314508895315 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1773825_at SPCC1753.02c.S1 --- 2.43304171253051 --- --- --- --- 6.99324655532837 4.26610898971558 12.0287008285522 4.32370901107788 0.129638999700546 0.533936023712158 0.24609400331974 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1753.02c /GEN=git3 /DEF=glucose-triggered adenylate cyclase activation protein --- --- --- --- --- --- SPCC1753.02c // |git3||glucose-triggered adenylate cyclase activation protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.43304171253051 -1.63925642129331 1.19007130894992 1.72004529418274 -1.61741841030717 Max fold change below threshold 4 2.43304171253051 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769775_at YJL192C.S1 suppressor of pma1-7 2.43265005221403 597.184692382813 1282.12591552734 SOP4 6888 // ER to Golgi transport // inferred from mutant phenotype 299 // integral to membrane of membrane fraction // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay --- 1278.92077636719 525.731506347656 668.637878417969 1285.3310546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL192C /GEN=SOP4 /DB_XREF=GI:6322269 /SEG=NC_001142:-72709,73413 /DEF=suppressor of pma1-7 /NOTE=Sop4p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 12230471]; go_component: integral to membrane of membrane fraction [goid GO:0000299] [evidence IDA] [pmid 12230471]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 12230471] --- --- --- --- --- --- S0003728 // SOP4 SGDID:S0003728, Chr X from 73413-72709, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000023993 // cdna:Genscan chromosome:SGD1:X:72709:73413:-1 // ensembl // 11 // --- /// GENEFINDER00000024376 // cdna:GeneFinder chromosome:SGD1:X:72709:73221:-1 // ensembl // 9 // --- /// YJL192C // cdna:known chromosome:SGD1:X:72709:73413:-1 gene:YJL192C // ensembl // 11 // --- --- No cerevisiae_gene 1.23357897488756 -2.43265005221403 1.05533888350192 -1.91272558382899 1.00501225598862 Max fold change below threshold 4 2.43265005221403 Max fold change at or above threshold 0.84871540107886 -1.03548262487417 -0.677984297602451 0.864751521397766 939.655303955078 399.739974060617 0.425411288988719 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772407_at YNL044W.S1 Protein localized to COPII vesicles, proposed to be involved in ER to Golgi transport; interacts with members of the Rab GTPase family and Yip1p 2.43249279041801 3165.4658203125 1544.26104736328 YIP3 6888 // ER to Golgi transport // inferred from physical interaction 30138 // COPII-coated vesicle // inferred from direct assay --- 1533.88293457031 3731.1591796875 2599.7724609375 1554.63916015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL044W /GEN=YIP3 /DB_XREF=GI:6681850 /SEG=NC_001146:+545266,545875 /DEF=Interacts with YPT proteins /NOTE=Yip3p; go_component: COPII-coated vesicle [goid GO:0030138] [evidence IDA] [pmid 11157978]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IPI] [pmid 11157978] --- --- --- --- --- CAA66058.1 // span:73-104,124-146 // numtm:2 /// S0004989 // span:73-104,124-146 // numtm:2 S0004989 // YIP3 SGDID:S0004989, Chr XIV from 545267-545290,545370-545876, intron sequence removed, Verified ORF // sgd // 11 // --- /// X97401 // S.cerevisiae mRNA for YIP3 protein. // gb // 9 // --- /// YNL044W // cdna:known chromosome:SGD1:XIV:545267:545876:1 gene:YNL044W // ensembl // 11 // --- GENSCAN00000020000 // ensembl // 8 // Cross Hyb Matching Probes /// YNL043C // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene 1.01648122739209 2.43249279041801 -1.15755183851718 1.6948962677297 1.01353181857503 Max fold change below threshold 4 2.43249279041801 Max fold change at or above threshold -0.786532515131425 1.31854697585814 0.234632751003095 -0.766647211729813 2354.86343383789 1043.79727916321 0.443251724989444 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770399_at YOL109W.S1 Peripheral membrane protein of the plasma membrane that interacts with Mid2p; regulates the cell integrity pathway mediated by Pkc1p and Slt2p 2.43214887758888 6940.853515625 3454.396484375 ZEO1 6950 // response to stress // inferred from genetic interaction /// 6950 // response to stress // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from genetic interaction /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 19897 // extrinsic to plasma membrane // inferred from direct assay --- 3772.34204101563 9174.8974609375 4706.8095703125 3136.45092773438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL109W /GEN=ZEO1 /DB_XREF=GI:6324463 /SEG=NC_001147:+110296,110637 /DEF=Peripheral membrane protein of the plasma membrane that interacts with Mid2p; regulates the cell integrity pathway mediated by Pkc1p and Slt2p /NOTE=Zeo1p; go_component: extrinsic to plasma membrane [goid GO:0019897] [evidence IDA] [pmid 12949174]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IGI,IMP] [pmid 12949174]; go_process: response to stress [goid GO:0006950] [evidence IGI,IMP] [pmid 12949174] --- --- --- --- --- --- S0005469 // ZEO1 SGDID:S0005469, Chr XV from 110296-110637, Verified ORF // sgd // 11 // --- /// GENSCAN00000017379 // cdna:Genscan chromosome:SGD1:XV:110296:110637:1 // ensembl // 11 // --- /// GENEFINDER00000022614 // cdna:GeneFinder chromosome:SGD1:XV:110296:110637:1 // ensembl // 11 // --- /// YOL109W // cdna:known chromosome:SGD1:XV:110296:110637:1 gene:YOL109W // ensembl // 11 // --- --- No cerevisiae_gene 1.27182082427786 2.43214887758888 -1.3874117418672 1.24771548261973 -1.20274224846253 Max fold change below threshold 4 2.43214887758888 Max fold change at or above threshold -0.522306373504693 1.45750339777628 -0.179863251380554 -0.75533377289103 5197.625 2728.82551560816 0.525013927631979 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777141_at YLR019W.S1 Functionally redundant Psr1p homolog, a plasma membrane phosphatase involved in the general stress response; required with Psr1p and Whi2p for full activation of STRE-mediated gene expression, possibly through dephosphorylation of Msn2p 2.43169817632778 673.943359375 1355.63433837891 PSR2 6950 // response to stress // inferred from genetic interaction 5886 // plasma membrane // inferred from sequence similarity 4721 // phosphoprotein phosphatase activity // inferred from sequence similarity 1302.57080078125 535.663024902344 812.223693847656 1408.69787597656 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR019W /GEN=PSR2 /DB_XREF=GI:6323047 /SEG=NC_001144:+180287,181480 /DEF=Plasma membrane Sodium Response 2 /NOTE=Psr2p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 10777497]; go_function: phosphoprotein phosphatase activity [goid GO:0004721] [evidence ISS] [pmid 10777497]; go_process: response to stress [goid GO:0006950] [evidence IGI] [pmid 10777497] --- --- --- --- --- --- S0004009 // PSR2 SGDID:S0004009, Chr XII from 180287-181480, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024596 // cdna:GeneFinder chromosome:SGD1:XII:180287:181480:1 // ensembl // 11 // --- /// GENSCAN00000017801 // cdna:Genscan chromosome:SGD1:XII:180806:181480:1 // ensembl // 11 // --- /// YLR019W // cdna:known chromosome:SGD1:XII:180287:181480:1 gene:YLR019W // ensembl // 11 // --- --- No cerevisiae_gene -1.42291346380923 -2.43169817632778 -1.15924952198853 -1.60370943454103 1.08147509151262 Max fold change below threshold 4 2.43169817632778 Max fold change at or above threshold 0.698949560189741 -1.16367542066699 -0.491979518106048 0.956705378583298 1014.78884887695 411.734935245075 0.405734587742794 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776595_at YMR234W.S1 Ribonuclease H1, removes RNA primers during Okazaki fragment synthesis; degrades RNA attached to the 5'-end of a DNA strand 2.43158859957435 131.144130706787 306.399002075195 RNH1 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 43137 // DNA replication, removal of RNA primer // traceable author statement 5622 // intracellular // traceable author statement /// 5634 // nucleus // inferred from curator 4523 // ribonuclease H activity // inferred from direct assay 280.794219970703 115.477684020996 146.810577392578 332.003784179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR234W /GEN=RNH1 /DB_XREF=GI:6323890 /SEG=NC_001145:+740265,741311 /DEF=Ribonuclease H1, removes RNA primers during Okazaki fragment synthesis; degrades RNA attached to the 5'-end of a DNA strand /NOTE=Rnh1p; go_component: cell [goid GO:0005623] [evidence TAS] [pmid 7489497]; go_function: ribonuclease H activity [goid GO:0004523] [evidence IDA] [pmid 7489497]; go_process: DNA replication [goid GO:0006260] [evidence TAS] [pmid 9759502]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584] --- --- --- --- --- --- S0004847 // RNH1 SGDID:S0004847, Chr XIII from 740265-741311, Verified ORF // sgd // 11 // --- /// GENSCAN00000018911 // cdna:Genscan chromosome:SGD1:XIII:740265:741311:1 // ensembl // 11 // --- /// GENEFINDER00000021977 // cdna:GeneFinder chromosome:SGD1:XIII:740265:741311:1 // ensembl // 11 // --- /// YMR234W // cdna:known chromosome:SGD1:XIII:740265:741311:1 gene:YMR234W // ensembl // 11 // --- --- No cerevisiae_gene -1.46857825758195 -2.43158859957435 1.23219735976216 -1.91262935517137 1.18237399692318 Max fold change below threshold 4 2.43158859957435 Max fold change at or above threshold 0.595744503140702 -0.992165911619687 -0.691204925330644 1.08762633380963 218.771566390991 104.109485278899 0.475882158711764 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778649_at YGL170C.S1 Component of the meiotic outer plaque of the spindle pole body, involved in modifying the meiotic outer plaque that is required prior to prospore membrane formation 2.43097208165632 70.3202056884766 32.4009304046631 SPO74 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype 5816 // spindle pole body // inferred from direct assay /// 5816 // spindle pole body // inferred from mutant phenotype 5198 // structural molecule activity // inferred from direct assay /// 5198 // structural molecule activity // inferred from mutant phenotype 32.8446884155273 79.8445205688477 60.7958908081055 31.9571723937988 0.00195312988944352 0.00122069998178631 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL170C /GEN=SPO74 /DB_XREF=GI:6321268 /SEG=NC_001139:-184157,185398 /DEF=Component of the meiotic outer plaque of the spindle pole body, involved in modifying the meiotic outer plaque that is required prior to prospore membrane formation /NOTE=Spo74p; go_component: spindle pole body [goid GO:0005816] [evidence IDA,IMP] [pmid 12796288]; go_function: structural molecule activity [goid GO:0005198] [evidence IDA,IMP] [pmid 12796288]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 11470404] --- --- --- --- --- --- S0003138 // SPO74 SGDID:S0003138, Chr VII from 185400-184159, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019221 // cdna:Genscan chromosome:SGD1:VII:184159:185316:-1 // ensembl // 11 // --- /// YGL170C // cdna:known chromosome:SGD1:VII:184159:185400:-1 gene:YGL170C // ensembl // 11 // --- --- No cerevisiae_gene -1.07643592762207 2.43097208165632 -1.63101815337925 1.85101134280708 -1.02777204474764 Max fold change below threshold 4 2.43097208165632 Max fold change at or above threshold -0.796872736205128 1.22587128652048 0.406070444169339 -0.835068994484696 51.3605680465698 23.2356796635043 0.452403089514819 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775538_at SPAC30C2.07.S1 --- 2.43077091828959 --- --- --- --- 5.97035551071167 6.02813720703125 5.04018449783325 3.01876306533813 0.111571997404099 0.0805663987994194 0.107177734375 0.018554700538516 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30C2.07 /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPAC30C2.07 // |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.54465896768129 1.00967809977411 -2.43077091828959 -1.18455098484555 -1.97774895925558 Max fold change below threshold 4 2.43077091828959 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1778347_at YNL110C.S1 Constituent of 66S pre-ribosomal particles, involved in 60S ribosomal subunit biogenesis; localizes to both nucleolus and cytoplasm 2.43035359580473 1032.27645874023 797.636962890625 NOP15 915 // cytokinesis, contractile ring formation // inferred from mutant phenotype /// 42255 // ribosome assembly // traceable author statement /// 42273 // ribosomal large subunit biogenesis // inferred from mutant phenotype /// 42273 // ribosomal large subunit biogenesis // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 762.344360351563 1065.30505371094 999.247863769531 832.929565429688 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL110C /GEN=NOP15 /DB_XREF=GI:6324219 /SEG=NC_001146:-417826,418488 /DEF=Constituent of 66S pre-ribosomal particles, involved in 60S ribosomal subunit biogenesis; localizes to both nucleolus and cytoplasm /NOTE=Nop15p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11583614]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10953080]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cytokinesis, contractile ring formation [goid GO:0000915] [evidence IMP] [pmid 14657029]; go_process: ribosomal large subunit biogenesis [goid GO:0042273] [evidence IMP,IPI] [pmid 11583614]; go_process: ribosome assembly [goid GO:0042255] [evidence TAS] [pmid 15116429] --- --- --- --- --- --- S0005054 // NOP15 SGDID:S0005054, Chr XIV from 418488-417826, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019945 // cdna:Genscan chromosome:SGD1:XIV:417826:418488:-1 // ensembl // 11 // --- /// YNL110C // cdna:known chromosome:SGD1:XIV:417826:418488:-1 gene:YNL110C // ensembl // 11 // --- --- No cerevisiae_gene 2.43035359580473 1.39740661716139 -1.02488054923964 1.31075655010909 1.09258965993475 Max fold change below threshold 4 2.43035359580473 Max fold change at or above threshold -1.08158118455362 1.0655359039444 0.597381042768701 -0.581335762159487 914.95671081543 141.101151391471 0.1542162046833 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774512_at YNR033W.S1 Para-aminobenzoate (PABA) synthase, has similarity to Escherichia coli PABA synthase components PabA and PabB 2.43026960615058 409.111297607422 802.866088867188 ABZ1 46482 // para-aminobenzoic acid metabolism // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 46820 // 4-amino-4-deoxychorismate synthase activity // inferred from mutant phenotype /// 46820 // 4-amino-4-deoxychorismate synthase activity // inferred from sequence similarity 762.532836914063 313.764709472656 504.457885742188 843.199340820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR033W /GEN=ABZ1 /DB_XREF=GI:6324361 /SEG=NC_001146:+687634,689997 /DEF=Para-aminobenzoate (PABA) synthase, has similarity to Escherichia coli PABA synthase components PabA and PabB /NOTE=Abz1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: 4-amino-4-deoxychorismate synthase activity [goid GO:0046820] [evidence IMP,ISS] [pmid 8346682]; go_process: para-aminobenzoic acid metabolism [goid GO:0046482] [evidence IMP] [pmid 8346682] --- --- --- --- --- --- S0005316 // ABZ1 SGDID:S0005316, Chr XIV from 687635-689998, Verified ORF // sgd // 11 // --- /// GENSCAN00000020063 // cdna:Genscan chromosome:SGD1:XIV:687635:689998:1 // ensembl // 11 // --- /// GENEFINDER00000020506 // cdna:GeneFinder chromosome:SGD1:XIV:687635:689998:1 // ensembl // 11 // --- /// YNR033W // cdna:known chromosome:SGD1:XIV:687635:689998:1 gene:YNR033W // ensembl // 11 // --- --- No cerevisiae_gene -1.5628209048567 -2.43026960615058 1.19828327705534 -1.51158869445004 1.10578758054893 Max fold change below threshold 4 2.43026960615058 Max fold change at or above threshold 0.645433897001576 -1.20484395141602 -0.418613071100275 0.978023125514721 605.988693237305 242.540939364974 0.400240040897916 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779052_at SPBC1711.13.S1 --- 2.43006592087837 --- --- --- --- 8.59740257263184 5.1553897857666 6.32802295684814 4.38552379608154 0.334473013877869 0.665526986122131 0.274170011281967 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1711.13 /GEN=his2 /DEF=histidinol dehydrogenase (predicted) --- --- --- --- --- --- SPBC1711.13 // |his2||histidinol dehydrogenase His2 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.43006592087837 -1.66765325802681 -1.82218430761926 -1.35862379628819 -1.96040495329511 Max fold change below threshold 4 2.43006592087837 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779858_at YPL139C.S1 Negative regulator of meiosis, required for repression of a subset of meiotic genes during vegetative growth, binding of histone deacetylase Rpd3p required for activity, contains a NEE box and a WD repeat motif; homologous with Wtm1p, Wtm2p 2.429985833092 229.098815917969 547.662261962891 UME1 40020 // regulation of meiosis // inferred from genetic interaction 5634 // nucleus // inferred from direct assay 3714 // transcription corepressor activity // inferred from direct assay 435.566284179688 179.246429443359 278.951202392578 659.758239746094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL139C /GEN=UME1 /DB_XREF=GI:6325118 /SEG=NC_001148:-289668,291050 /DEF=Negative regulator of meiosis. Unscheduled Meiotic gene Expression. /NOTE=Ume1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9234739]; go_function: transcription corepressor activity [goid GO:0003714] [evidence IDA] [pmid 9234739]; go_process: regulation of meiosis [goid GO:0040020] [evidence IGI] [pmid 9234739] --- --- --- --- --- --- S0006060 // UME1 SGDID:S0006060, Chr XVI from 291050-289668, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017082 // cdna:Genscan chromosome:SGD1:XVI:289668:290726:-1 // ensembl // 11 // --- /// GENEFINDER00000020954 // cdna:GeneFinder chromosome:SGD1:XVI:289668:291050:-1 // ensembl // 11 // --- /// YPL139C // cdna:known chromosome:SGD1:XVI:289668:291050:-1 gene:YPL139C // ensembl // 11 // --- --- No cerevisiae_gene 1.16706080082194 -2.429985833092 1.9541009803655 -1.561442576493 1.51471375014398 Max fold change below threshold 4 2.429985833092 Max fold change at or above threshold 0.225304342828577 -0.998581729807565 -0.522507478308691 1.29578486528768 388.38053894043 209.431139439505 0.539242105206584 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770565_at YDR127W.S1 Pentafunctional arom protein, catalyzes steps 2 through 6 in the biosynthesis of chorismate, which is a precursor to aromatic amino acids 2.42935153437903 4960.25024414063 2230.90197753906 ARO1 9073 // aromatic amino acid family biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 3855 // 3-dehydroquinate dehydratase activity // inferred from direct assay /// 3856 // 3-dehydroquinate synthase activity // inferred from direct assay /// 3866 // 3-phosphoshikimate 1-carboxyvinyltransferase activity // inferred from direct assay /// 4764 // shikimate 5-dehydrogenase activity // inferred from direct assay /// 4765 // shikimate kinase activity // inferred from direct assay 2172.95922851563 5278.8818359375 4641.61865234375 2288.8447265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR127W /GEN=ARO1 /DB_XREF=GI:6320332 /SEG=NC_001136:+704478,709244 /DEF=Pentafunctional arom protein, catalyzes steps 2 through 6 in the biosynthesis of chorismate, which is a precursor to aromatic amino acids /NOTE=Aro1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: 3-dehydroquinate dehydratase activity [goid GO:0003855] [evidence IDA] [pmid 6355828]; go_function: 3-dehydroquinate synthase activity [goid GO:0003856] [evidence IDA] [pmid 6355828]; go_function: 3-phosphoshikimate 1-carboxyvinyltransferase activity [goid GO:0003866] [evidence IDA] [pmid 6355828]; go_function: shikimate 5-dehydrogenase activity [goid GO:0004764] [evidence IDA] [pmid 6355828]; go_function: shikimate kinase activity [goid GO:0004765] [evidence IDA] [pmid 6355828]; go_process: aromatic amino acid family biosynthesis [goid GO:0009073] [evidence TAS] --- --- --- --- --- --- S0002534 // ARO1 SGDID:S0002534, Chr IV from 704479-709245, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023640 // cdna:GeneFinder chromosome:SGD1:IV:704479:709245:1 // ensembl // 11 // --- /// GENSCAN00000025191 // cdna:Genscan chromosome:SGD1:IV:704479:709245:1 // ensembl // 11 // --- /// YDR127W // cdna:known chromosome:SGD1:IV:704479:709245:1 gene:YDR127W // ensembl // 11 // --- --- No cerevisiae_gene 1.7606836560121 2.42935153437903 -1.07010441717817 2.13608179639638 1.05333072821897 Max fold change below threshold 4 2.42935153437903 Max fold change at or above threshold -0.890347337310162 1.05349991894591 0.654667608062943 -0.817820189698693 3595.57611083984 1597.8223584316 0.444385630890841 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770677_at YCR063W.S1 Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern 2.42796281460118 30.1702899932861 80.0292015075684 BUD31 282 // bud site selection // inferred from mutant phenotype /// 8380 // RNA splicing // inferred from physical interaction 5634 // nucleus // inferred from direct assay --- 69.2836227416992 28.535701751709 31.8048782348633 90.7747802734375 0.030273400247097 0.303710997104645 0.274170011281967 0.0107421996071935 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR063W /GEN=BUD31 /DB_XREF=GI:6319908 /SEG=NC_001135:+228313,228786 /DEF=Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern /NOTE=Bud31p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: bud site selection [goid GO:0000282] [evidence IMP] [pmid 11452010] --- --- --- --- --- --- S0000659 // BUD31 SGDID:S0000659, Chr III from 228313-228786, Verified ORF // sgd // 11 // --- /// GENSCAN00000022502 // cdna:Genscan chromosome:SGD1:III:228313:228786:1 // ensembl // 11 // --- /// GENEFINDER00000023322 // cdna:GeneFinder chromosome:SGD1:III:228313:228786:1 // ensembl // 11 // --- /// YCR063W // cdna:known chromosome:SGD1:III:228313:228786:1 gene:YCR063W // ensembl // 11 // --- YCR064C // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene 1.50334688045326 -2.42796281460118 -1.04343378413268 -2.17839610106582 1.31019101890588 Max fold change below threshold 4 2.42796281460118 Max fold change at or above threshold 0.470864975216968 -0.881851832669992 -0.773324333124729 1.18431119057775 55.0997457504272 30.1230240893076 0.546699874546591 PPAPAP Called_P_>2EXP 4 0 PAAP 2 2 0 Yes No 1 < x = 2
RPTR-Sc-M62653-1_at AFFX-Sc-M62653-1 --- 2.42765935874251 --- --- --- --- 3.12830376625061 1.70539367198944 4.14049768447876 1.87931847572327 0.466064006090164 0.5 0.111571997404099 0.16552734375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL M62653 /FEA=CDS /DB_XREF=AAA27721.1 GI:155661 /PROD=green-fluorescent protein /GEN=GFP --- --- --- --- --- --- AFFX-Sc-M62653-1 // --- // affx // --- // --- --- No No -2.42765935874251 -1.8343587276252 -1.97609285924379 1.32355998453478 -1.66459480213787 Max fold change below threshold 2 2.42765935874251 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780228_s_at SPAC977.14c.S1 --- 2.427538235906 --- --- --- --- 2.76993298530579 6.72411823272705 1.3800938129425 3.97079086303711 0.274170011281967 0.24609400331974 0.533936023712158 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC977.14c /DEF=aldoketo reductase --- --- --- --- --- --- SPAC977.14c // |||aldo/keto reductase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPAC750.01 // |||pseudogene|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.69076190006474 2.427538235906 1.86004869537554 -2.00706137461771 1.43353318802359 Max fold change below threshold 3 2.427538235906 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773615_at SPCC895.08c.S1 --- 2.42719859603379 --- --- --- --- 1.74534237384796 3.1315929889679 2.98074769973755 0.719076871871948 0.919434010982513 0.888427972793579 0.805419981479645 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC895.08c /DEF=hypothetical protein --- --- --- --- --- --- SPCC895.08c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.25759179402537 1.79425712449968 1.10057104733265 1.70782978996028 -2.42719859603379 Max fold change below threshold 2 2.42719859603379 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773433_at YPL183W-A.S1 Homolog of the prokaryotic ribosomal protein L36, likely to be a mitochondrial ribosomal protein coded in the nuclear genome 2.42716753582481 478.40544128418 888.748168945313 --- 6412 // protein biosynthesis // inferred from sequence similarity 5762 // mitochondrial large ribosomal subunit // inferred from sequence similarity 3735 // structural constituent of ribosome // inferred from sequence similarity 786.498352050781 447.37060546875 509.440277099609 990.997985839844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL183W-A /GEN=UIP4 /DB_XREF=GI:6325073 /SEG=NC_001148:+199094,199375 /DEF=Ypl183w-ap /NOTE=go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence ISS] [pmid 12392552]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence ISS] [pmid 9392081]; go_process: protein biosynthesis [goid GO:0006412] [evidence ISS] [pmid 9392081] --- --- --- --- --- --- S0007224 // YPL183W-A SGDID:S0007224, Chr XVI from 199094-199375, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020789 // cdna:GeneFinder chromosome:SGD1:XVI:199094:199375:1 // ensembl // 11 // --- /// YPL183W-A // cdna:known chromosome:SGD1:XVI:199094:199375:1 gene:YPL183W-A // ensembl // 11 // --- --- No cerevisiae_gene -2.42716753582481 -1.75804655566652 1.43526445661253 -1.54384799829441 1.26001279374055 Max fold change below threshold 4 2.42716753582481 Max fold change at or above threshold 0.407664678862674 -0.935595386881455 -0.689741981974591 1.21767268999337 683.576805114746 252.466186727708 0.369331119544539 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775227_at YAL008W.S1 Mitochondrial protein of unknown function 2.42678257752821 720.878234863281 513.185745239258 FUN14 --- 5739 // mitochondrion // inferred from direct assay --- 469.651092529297 548.549499511719 893.206970214844 556.720397949219 0.000244141003349796 0.00292969006113708 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL008W /GEN=FUN14 /DB_XREF=GI:6319311 /SEG=NC_001133:+136918,137514 /DEF=Protein of unknown function /NOTE=Fun14p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000006 // span:106-128,172-194 // numtm:2 S0000006 // FUN14 SGDID:S0000006, Chr I from 136916-137512, Verified ORF // sgd // 11 // --- /// YAL008W // cdna:known chromosome:SGD1:I:136916:137512:1 gene:YAL008W // ensembl // 11 // --- --- No cerevisiae_gene -1.21683244904031 1.16799366218338 2.42678257752821 1.90185221417136 1.18539146784693 Max fold change below threshold 4 2.42678257752821 Max fold change at or above threshold -0.78287444654662 -0.363773004376581 1.46701735693629 -0.320369906013085 617.03199005127 188.256109484851 0.305099431666758 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771085_at YOL120C.S1 Protein component of the large (60S) ribosomal subunit, identical to Rpl18Ap and has similarity to rat L18 ribosomal protein /// Protein component of the large (60S) ribosomal subunit, identical to Rpl18Bp and has similarity to rat L18 ribosomal protein; intron of RPL18A pre-mRNA forms stem-loop structures that are a target for Rnt1p cleavage leading to degradation 2.42553157500702 2633.23858642578 4020.96057128906 RPL18B /// RPL18A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 4559.53125 1879.80700683594 3386.67016601563 3482.38989257813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL120C /GEN=RPL18A /DB_XREF=GI:6324452 /SEG=NC_001147:-93394,94401 /DEF=Protein component of the large (60S) ribosomal subunit, identical to Rpl18Bp and has similarity to rat L18 ribosomal protein; intron of RPL18A pre-mRNA forms stem-loop structures that are a target for Rnt1p cleavage leading to degradation /NOTE=Rpl18ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0005480 // RPL18A SGDID:S0005480, Chr XV from 94401-94290,93842-93394, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022831 // cdna:GeneFinder chromosome:SGD1:XV:93394:94401:-1 // ensembl // 11 // --- /// YOL120C // cdna:known chromosome:SGD1:XV:93394:94401:-1 gene:YOL120C // ensembl // 11 // --- --- No cerevisiae_gene 1.02865852352558 -2.42553157500702 -1.61989788727111 -1.34631689136832 -1.30931095903923 Max fold change below threshold 4 2.42553157500702 Max fold change at or above threshold 1.11866685966885 -1.3136941174713 0.0540716724709902 0.140955585331458 3327.09957885742 1101.69677459419 0.331128284105198 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775105_at SPAC630.11.S1 --- 2.42546662990498 --- --- --- --- 12.8485975265503 6.93310165405273 5.8210883140564 5.29737138748169 0.0805663987994194 0.334473013877869 0.274170011281967 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC630.11 /DEF=involved in intracellular protein transport --- --- --- --- --- --- SPAC630.11 // |||vacuolar transport protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.88177935267062 -1.8532250308258 -1.01834408941229 -2.20725005932728 -2.42546662990498 Max fold change below threshold 4 2.42546662990498 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774974_at YML056C.S1 Inosine monophosphate dehydrogenase, catalyzes the first step of GMP biosynthesis, member of a four-gene family in S. cerevisiae, constitutively expressed 2.42525685182183 430.860916137695 941.852691650391 IMD4 --- 5737 // cytoplasm // inferred from direct assay 3938 // IMP dehydrogenase activity // inferred from sequence similarity 860.943664550781 356.085113525391 505.63671875 1022.76171875 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML056C /GEN=IMD4 /DB_XREF=GI:6323585 /SEG=NC_001145:-162194,164176 /DEF=Inosine monophosphate dehydrogenase, catalyzes the first step of GMP biosynthesis, member of a four-gene family in S. cerevisiae, constitutively expressed /NOTE=Imd4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: IMP dehydrogenase activity [goid GO:0003938] [evidence ISS] [pmid 11003640]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004520 // IMD4 SGDID:S0004520, Chr XIII from 164176-163717,163308-162194, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000018670 // cdna:Genscan chromosome:SGD1:XIII:162194:163216:-1 // ensembl // 11 // --- /// GENEFINDER00000022016 // cdna:GeneFinder chromosome:SGD1:XIII:162194:163216:-1 // ensembl // 11 // --- /// YML056C // cdna:known chromosome:SGD1:XIII:162194:164176:-1 gene:YML056C // ensembl // 11 // --- X16804 // gb // 1 // Negative Strand Matching Probes No cerevisiae_gene 2.42525685182183 -2.41780302475181 -1.38805747344962 -1.70269213572769 1.18795428883683 Max fold change below threshold 4 2.42525685182183 Max fold change at or above threshold 0.56604941569183 -1.07081424483769 -0.585934692993262 1.09069952213912 686.356803894043 308.430422886943 0.449373301374831 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775332_at YJL174W.S1 Glycoprotein involved in cell wall beta-glucan assembly; null mutation leads to severe growth defects, aberrant multibudded morphology, and mating defects 2.4249991955556 1014.98458862305 1933.30401611328 KRE9 6077 // beta-1,6 glucan metabolism // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5576 // extracellular region // inferred from direct assay --- 1945.70056152344 802.351013183594 1227.6181640625 1920.90747070313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL174W /GEN=KRE9 /DB_XREF=GI:6322287 /SEG=NC_001142:+95090,95920 /DEF=cell wall beta-glucan assembly /NOTE=Kre9p; go_component: extracellular [goid GO:0005576] [evidence IDA] [pmid 8413233]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: beta-1,6 glucan metabolism [goid GO:0006077] [evidence IMP] [pmid 8413233]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 8413233] --- --- --- --- scop // a.4.5.Biotin repressor-like // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Biotin repressor-like // 6.19999980926514 S0003710 // span:7-26 // numtm:1 S0003710 // KRE9 SGDID:S0003710, Chr X from 95090-95920, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024366 // cdna:GeneFinder chromosome:SGD1:X:95090:95920:1 // ensembl // 11 // --- /// GENSCAN00000024005 // cdna:Genscan chromosome:SGD1:X:95231:95920:1 // ensembl // 11 // --- /// YJL174W // cdna:known chromosome:SGD1:X:95090:95920:1 gene:YJL174W // ensembl // 11 // --- --- No cerevisiae_gene 1.02476087381916 -2.4249991955556 -1.11081671325856 -1.58493953452482 -1.01290696777354 Max fold change below threshold 4 2.4249991955556 Max fold change at or above threshold 0.845104618140062 -1.20396156365817 -0.441814468431751 0.800671413949864 1474.14430236816 557.98566122274 0.378514952929882 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771671_at YDL159W-A.S1 Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 2.42494510961716 22.2993135452271 9.63084387779236 --- --- --- --- 11.3670444488525 27.5644588470459 17.0341682434082 7.89464330673218 0.0952147990465164 0.00585938012227416 0.0107421996071935 0.00585938012227416 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL159W-A /GEN=DHH1 /DB_XREF=GI:13129162 /SEG=NC_001136:+172183,172314 /DEF=Hypothetical ORF identified by homology. See FEBS Letters [2000] 487:31-36. /NOTE=Ydl159w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007599 // YDL159W-A SGDID:S0007599, Chr IV from 172183-172314, Uncharacterized ORF // sgd // 11 // --- /// YDL159W-A // cdna:known chromosome:SGD1:IV:172183:172314:1 gene:YDL159W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.47848422840104 2.42494510961716 1.02801334987805 1.49855737083246 -1.43984268917625 Max fold change below threshold 4 2.42494510961716 Max fold change at or above threshold -0.534555874042995 1.34851469834965 0.124289654341105 -0.938248478647764 15.9650787115097 8.6015971125356 0.538775740976112 APPPPP Called_P_>2EXP 4 0 APPP 1 3 0 Yes Yes 2 < x = 3
1773432_at SPCC584.05.S1 --- 2.42459955541145 --- --- --- --- 4.0885066986084 8.91199016571045 9.91299152374268 1.8079981803894 0.0676269978284836 0.398925989866257 0.24609400331974 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC584.05 /GEN=sec1 /DEF=sec1 family --- --- --- --- --- --- SPCC584.05 // |sec1||sec1 family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.42906227069902 2.17976655602492 -1.22816188603239 2.42459955541145 -2.2613444764241 Max fold change below threshold 3 2.42459955541145 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778442_at YPL007C.S1 One of six subunits of RNA polymerase III transcription initiation factor complex (TFIIIC); part of TFIIIC TauB domain that binds BoxB promoter sites of tRNA and other genes; linker between TauB and TauA domains; human homolog is TFIIIC-90 2.42459718096318 102.449893951416 198.257225036621 TFC8 6384 // transcription initiation from RNA polymerase III promoter // traceable author statement 127 // transcription factor TFIIIC complex // traceable author statement 3709 // RNA polymerase III transcription factor activity // traceable author statement 209.17073059082 86.2703018188477 118.629486083984 187.343719482422 0.000732421991415322 0.0107421996071935 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL007C /GEN=TFC8 /DB_XREF=GI:6325250 /SEG=NC_001148:-542077,543843 /DEF=Transcription factor for RNA polymerase III /NOTE=Tfc8p; go_component: transcription factor TFIIIC complex [goid GO:0000127] [evidence TAS] [pmid 10384303]; go_function: RNA polymerase III transcription factor activity [goid GO:0003709] [evidence TAS] [pmid 10384303]; go_process: transcription initiation from Pol III promoter [goid GO:0006384] [evidence TAS] [pmid 10384303] --- --- --- --- --- --- S0005928 // TFC8 SGDID:S0005928, Chr XVI from 543845-542079, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017178 // cdna:Genscan chromosome:SGD1:XVI:542079:543845:-1 // ensembl // 11 // --- /// YPL007C // cdna:known chromosome:SGD1:XVI:542079:543845:-1 gene:YPL007C // ensembl // 11 // --- --- No cerevisiae_gene -1.36699467181519 -2.42459718096318 1.36263727445729 -1.76322714946887 -1.1165078347366 Max fold change below threshold 4 2.42459718096318 Max fold change at or above threshold 1.02177159010705 -1.11325401873263 -0.551110438132002 0.642592866757581 150.353559494019 57.5639131742151 0.382857002973083 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1778516_at YOR156C.S1 SUMO ligase, catalyzes the covalent attachment of SUMO (Smt3p) to proteins 2.42447196524512 66.5805740356445 150.979751586914 NFI1 16925 // protein sumoylation // inferred from direct assay /// 30261 // chromosome condensation // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 19789 // SUMO ligase activity // inferred from direct assay 160.815673828125 66.3301849365234 66.8309631347656 141.143829345703 0.000244141003349796 0.00415039015933871 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR156C /GEN=NFI1 /DB_XREF=GI:6324730 /SEG=NC_001147:-628360,630540 /DEF=Interacts with C-terminus of CDC12. Contains two known protein motifs: SAP (DNA binding) and MIZ-finger /NOTE=Nfi1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromosome condensation [goid GO:0030261] [evidence TAS] [pmid 12402242] --- --- --- --- --- --- S0005682 // NFI1 SGDID:S0005682, Chr XV from 630540-628360, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017580 // cdna:Genscan chromosome:SGD1:XV:628360:630540:-1 // ensembl // 10 // --- /// GENEFINDER00000022585 // cdna:GeneFinder chromosome:SGD1:XV:628360:629994:-1 // ensembl // 10 // --- /// YOR156C // cdna:known chromosome:SGD1:XV:628360:630540:-1 gene:YOR156C // ensembl // 10 // --- --- No cerevisiae_gene -2.15660865046518 -2.42447196524512 1.0100072908649 -2.40630489648694 -1.13937445635147 Max fold change below threshold 4 2.42447196524512 Max fold change at or above threshold 1.0536557765766 -0.859560394992675 -0.849420245870459 0.655324864286529 108.780162811279 49.3856838007498 0.453995310582759 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776813_at YPR007C.S1 Meiosis-specific component of sister chromatid cohesion complex; maintains cohesion between sister chromatids during meiosis I; maintains cohesion between centromeres of sister chromatids until meiosis II; homolog of S. pombe Rec8p 2.42435341360295 36.1764831542969 29.8713779449463 REC8 7062 // sister chromatid cohesion // traceable author statement /// 7126 // meiosis // inferred from mutant phenotype 780 // condensed nuclear chromosome, pericentric region // inferred from direct assay /// 798 // nuclear cohesin complex // inferred from direct assay 5488 // binding // inferred from direct assay 31.6306266784668 30.8475036621094 41.5054626464844 28.1121292114258 0.000244141003349796 0.014160200022161 0.000244141003349796 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR007C /GEN=REC8 /DB_XREF=GI:6325264 /SEG=NC_001148:-569331,571373 /DEF=Meoisis-specific component of sister chromatid cohesion complex; maintains cohesion between sister chromatids during meiosis I; maintains cohesion between centromeres of sister chromatids until meiosis II; homolog of S. pombe Rec8p /NOTE=Rec8p; go_component: condensed nuclear chromosome, pericentric region [goid GO:0000780] [evidence IDA] [pmid 10412984]; go_component: nuclear cohesin complex [goid GO:0000798] [evidence IDA] [pmid 10412984]; go_function: binding [goid GO:0005488] [evidence IDA] [pmid 10412984]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 10412984]; go_process: sister chromatid cohesion [goid GO:0007062] [evidence TAS] [pmid 11983163] --- --- --- --- --- --- S0006211 // REC8 SGDID:S0006211, Chr XVI from 571375-569333, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017191 // cdna:Genscan chromosome:SGD1:XVI:569333:571375:-1 // ensembl // 11 // --- /// GENEFINDER00000020814 // cdna:GeneFinder chromosome:SGD1:XVI:569333:571375:-1 // ensembl // 11 // --- /// YPR007C // cdna:known chromosome:SGD1:XVI:569333:571375:-1 gene:YPR007C // ensembl // 11 // --- --- No cerevisiae_gene -2.42435341360295 -1.02538691703988 1.1191559736457 1.31219223281277 -1.12515940861609 Max fold change below threshold 4 2.42435341360295 Max fold change at or above threshold -0.238087194652489 -0.371906934834364 1.44932072974394 -0.839326600257084 33.0239305496216 5.85207395630178 0.17720706950702 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1771497_at YIL069C.S1 Protein component of the small (40S) ribosomal subunit; identical to Rps24Ap and has similarity to rat S24 ribosomal protein /// Protein component of the small (40S) ribosomal subunit; identical to Rps24Bp and has similarity to rat S24 ribosomal protein 2.42387289328133 2313.77008056641 4197.25244140625 RPS24B /// RPS24A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 3735 // structural constituent of ribosome // traceable author statement 4490.60888671875 1852.65856933594 2774.88159179688 3903.89599609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL069C /GEN=RPS24B /DB_XREF=GI:6322120 /SEG=NC_001141:-231550,232366 /DEF=Protein component of the small (40S) ribosomal subunit; identical to Rps24Ap and has similarity to rat S24 ribosomal protein /NOTE=Rps24bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0001331 // RPS24B SGDID:S0001331, Chr IX from 232366-232364,231954-231550, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019015 // cdna:GeneFinder chromosome:SGD1:IX:231550:232458:-1 // ensembl // 11 // --- /// YIL069C // cdna:known chromosome:SGD1:IX:231550:232366:-1 gene:YIL069C // ensembl // 11 // --- --- No cerevisiae_gene 1.17116667194026 -2.42387289328133 -1.39714170409576 -1.61830648918279 -1.15028906794957 Max fold change below threshold 4 2.42387289328133 Max fold change at or above threshold 1.05076714608451 -1.19348583340391 -0.408898742330798 0.5516174296502 3255.51126098633 1175.4246698089 0.361056858839671 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772352_at YKR026C.S1 Alpha subunit of the translation initiation factor eIF2B, the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a positive regulator of GCN4 expression 2.42378058496999 190.247222900391 398.450653076172 GCN3 6413 // translational initiation // inferred from direct assay 5851 // eukaryotic translation initiation factor 2B complex // inferred from direct assay 3743 // translation initiation factor activity // inferred from direct assay /// 30234 // enzyme regulator activity // inferred from genetic interaction /// 30234 // enzyme regulator activity // inferred from mutant phenotype 382.950897216797 157.997344970703 222.497100830078 413.950408935547 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR026C /GEN=GCN3 /DB_XREF=GI:6322878 /SEG=NC_001143:-488381,489298 /DEF=Alpha subunit of the translation initiation factor eIF2B, the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a positive regulator of GCN4 expression /NOTE=Gcn3p; go_component: eukaryotic translation initiation factor 2B complex [goid GO:0005851] [evidence IDA] [pmid 8336705]; go_function: translation initiation factor activity [goid GO:0003743] [evidence IDA] [pmid 8336705]; go_process: translational initiation [goid GO:0006413] [evidence IDA] [pmid 8336705] --- --- --- --- --- --- S0001734 // GCN3 SGDID:S0001734, Chr XI from 489298-488381, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018440 // cdna:Genscan chromosome:SGD1:XI:488351:489298:-1 // ensembl // 11 // --- /// GENEFINDER00000023082 // cdna:GeneFinder chromosome:SGD1:XI:488351:489241:-1 // ensembl // 11 // --- /// YKR026C // cdna:known chromosome:SGD1:XI:488381:489298:-1 gene:YKR026C // ensembl // 11 // --- --- No cerevisiae_gene 1.38326171142687 -2.42378058496999 1.08024076117252 -1.72115005448659 1.08094905102468 Max fold change below threshold 4 2.42378058496999 Max fold change at or above threshold 0.716232122489087 -1.10222608757299 -0.58082907286318 0.966823037947081 294.348937988281 123.70564855511 0.420268710329219 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770636_at YGL240W.S1 Processivity factor required for the ubiquitination activity of the anaphase promoting complex (APC), mediates the activity of the APC by contributing to substrate recognition; involved in cyclin proteolysis 2.4235655328314 41.7018976211548 25.9930057525635 DOC1 22 // mitotic spindle elongation // traceable author statement /// 70 // mitotic sister chromatid segregation // traceable author statement /// 7091 // mitotic metaphase/anaphase transition // traceable author statement /// 8054 // cyclin catabolism // traceable author statement /// 31145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from direct assay /// 31145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from mutant phenotype /// 31145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from physical interaction 5680 // anaphase-promoting complex // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 30234 // enzyme regulator activity // inferred from direct assay 21.939266204834 30.2325458526611 53.1712493896484 30.046745300293 0.0461426004767418 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL240W /GEN=DOC1 /DB_XREF=GI:37362650 /SEG=NC_001139:+48613,49365 /DEF=Processivity factor required for the ubiquitination activity of the anaphase promoting complex (APC), mediates the activity of the APC by contributing to substrate recognition; involved in cyclin proteolysis /NOTE=Doc1p; go_component: anaphase-promoting complex [goid GO:0005680] [evidence TAS] [pmid 10465783]; go_function: enzyme regulator activity [goid GO:0030234] [evidence IDA] [pmid 12402045]; go_process: cyclin catabolism [goid GO:0008054] [evidence TAS] [pmid 10465783]; go_process: mitotic metaphase/anaphase transition [goid GO:0007091] [evidence TAS] [pmid 10465783]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence TAS] [pmid 10465783]; go_process: mitotic spindle elongation [goid GO:0000022] [evidence TAS] [pmid 10465783]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10465783] --- --- --- --- --- --- S0003209 // DOC1 SGDID:S0003209, Chr VII from 48613-49365, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021667 // cdna:GeneFinder chromosome:SGD1:VII:46054:49365:1 // ensembl // 11 // --- /// GENSCAN00000019171 // cdna:Genscan chromosome:SGD1:VII:48613:49365:1 // ensembl // 11 // --- /// YGL240W // cdna:known chromosome:SGD1:VII:48613:49365:1 gene:YGL240W // ensembl // 11 // --- --- No cerevisiae_gene 1.85844165621821 1.37801080357008 1.69089364445658 2.4235655328314 1.36954194455568 Max fold change below threshold 4 2.4235655328314 Max fold change at or above threshold -0.885351083581913 -0.268761416437855 1.43668783635479 -0.282575336335019 33.8474516868591 13.4502410431888 0.397378247781375 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1778972_s_at SPAC589.10c.S1 --- 2.42262698835783 --- --- --- --- 5.22679758071899 4.27330827713013 2.78465270996094 6.02000999450684 0.601073980331421 0.725830018520355 0.753906011581421 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC589.10c /DEF=ubiquitin family protein --- --- --- --- --- --- SPAC589.10c // |||ubiquitin family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPAC6G10.11c // |ubi3||ubiquitin family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.42262698835783 -1.22312673033484 1.11913836832175 -1.87700159593414 1.15175877801618 Max fold change below threshold 4 2.42262698835783 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776408_at SPBC17D1.03c.S1 --- 2.42157473552455 --- --- --- --- 2.96538662910461 7.18090534210205 1.67316818237305 5.76160287857056 0.5 0.303710997104645 0.633789002895355 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17D1.03c /DEF=exosome (RNase complex) (predicted) --- --- --- --- --- --- SPBC17D1.03c // |||exosome |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.20315374667392 2.42157473552455 -1.56281169656099 -1.77231832420984 1.94295166168947 Max fold change below threshold 3 2.42157473552455 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1774084_at YDR123C.S1 Component of the heteromeric Ino2p/Ino4p basic helix-loop-helix transcription activator that binds inositol/choline-responsive elements (ICREs), required for derepression of phospholipid biosynthetic genes in response to inositol depletion 2.42134892560635 260.418785095215 151.519844055176 INO2 8654 // phospholipid biosynthesis // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from physical interaction 5634 // nucleus // inferred from direct assay 3704 // specific RNA polymerase II transcription factor activity // inferred from mutant phenotype /// 3704 // specific RNA polymerase II transcription factor activity // inferred from physical interaction 137.07356262207 188.934646606445 331.902923583984 165.966125488281 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR123C /GEN=INO2 /DB_XREF=GI:6320328 /SEG=NC_001136:-698548,699462 /DEF=Transcription factor required for derepression of inositol-choline-regulated genes involved in phospholipid synthesis; potential Cdc28p substrate /NOTE=Ino2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8012448]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IMP,IPI] [pmid 8125958]; go_process: phospholipid biosynthesis [goid GO:0008654] [evidence IMP] [pmid 8125958]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IMP,IPI] [pmid 8125958] --- --- --- --- --- --- S0002530 // INO2 SGDID:S0002530, Chr IV from 699463-698549, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025188 // cdna:Genscan chromosome:SGD1:IV:698549:699463:-1 // ensembl // 11 // --- /// YDR123C // cdna:known chromosome:SGD1:IV:698549:699463:-1 gene:YDR123C // ensembl // 11 // --- --- No cerevisiae_gene 1.52002565217745 1.37834490467985 1.91611435189458 2.42134892560635 1.21078143964107 Max fold change below threshold 4 2.42134892560635 Max fold change at or above threshold -0.795604444295393 -0.196715431050885 1.45427455500769 -0.461954679661409 205.969314575195 86.5954840337032 0.420429053775818 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772571_at SPCC1235.15.S1 --- 2.41933278776064 --- --- --- --- 0.941966593265533 1.96548426151276 0.400757759809494 2.2789306640625 0.870360970497131 0.696289002895355 0.696289002895355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1235.15 /GEN=dga1 /DEF=diacylglycerol O-acyltransferase (PMID 12963726) --- --- --- --- --- --- SPCC1235.15 // |dga1|SPCC548.01|diacylglycerol O-acyltransferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -1.06380009608383 2.08657533671016 -2.12836739588949 -2.35046376572549 2.41933278776064 Max fold change below threshold 0 2.41933278776064 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779133_at YGR238C.S1 Protein that functions in a complex with Kel1p to negatively regulate mitotic exit, interacts with Tem1p and Lte1p; localizes to regions of polarized growth; potential Cdc28p substrate 2.41897949244439 250.322395324707 402.624572753906 KEL2 747 // conjugation with cellular fusion // inferred from genetic interaction /// 1100 // negative regulation of exit from mitosis // inferred from mutant phenotype /// 1100 // negative regulation of exit from mitosis // inferred from physical interaction 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay --- 382.352935791016 279.871795654297 220.772994995117 422.896209716797 0.00122069998178631 0.0239257998764515 0.00805663969367743 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR238C /GEN=KEL2 /DB_XREF=GI:6321677 /SEG=NC_001139:-966043,968691 /DEF=Protein that functions in a complex with Kel1p to negatively regulate mitotic exit, interacts with Tem1p and Lte1p; localizes to regions of polarized growth; potential Cdc28p substrate /NOTE=Kel2p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 9786949]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 9786949]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 9786949]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IGI] [pmid 9786949] --- --- --- --- scop // a.2.6.Effector domain of the protein kinase pkn/prk1 // All alpha proteins; Long alpha-hairpin; Effector domain of the protein kinase pkn/prk1; Effector domain of the protein kinase pkn/prk1 // 9.30000019073486 --- S0003470 // KEL2 SGDID:S0003470, Chr VII from 968692-966044, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019523 // cdna:Genscan chromosome:SGD1:VII:966044:968692:-1 // ensembl // 11 // --- /// GENEFINDER00000021584 // cdna:GeneFinder chromosome:SGD1:VII:966044:968692:-1 // ensembl // 11 // --- /// YGR238C // cdna:known chromosome:SGD1:VII:966044:968692:-1 gene:YGR238C // ensembl // 11 // --- --- No cerevisiae_gene -2.41897949244439 -1.36617173194296 1.00369672105567 -1.73188272324463 1.10603625637634 Max fold change below threshold 4 2.41897949244439 Max fold change at or above threshold 0.602982517071893 -0.502868272349036 -1.14059005487015 1.04047581014729 326.473484039307 92.6717610703902 0.283856930504141 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1777279_at SPAC19G12.15c.S1 --- 2.41857798921708 --- --- --- --- 0.786641120910645 1.75360751152039 0.900344014167786 1.45740699768066 0.725830018520355 0.5 0.665526986122131 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19G12.15c /GEN=tpp1 /DEF=trehalose-6-phosphate phosphatase (PMID 11004189) --- --- --- --- --- --- D89225 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1342. // gb // 11 // --- /// L40359 // Schizosaccharomyces pombe phosphatidate phosphatase (TPP) mRNA, partial cds. // gb // 9 // --- /// SPAC19G12.15c // |tpp1||trehalose-6-phosphate phosphatase Tpp1 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.41857798921708 2.22923448178039 1.83997739597237 1.14454226995598 1.85269617737948 Max fold change below threshold 0 2.41857798921708 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773413_at YDR150W.S1 Protein required for nuclear migration, localizes to the mother cell cortex and the bud tip; may mediate interactions of dynein and cytoplasmic microtubules with the cell cortex 2.41839911777695 2159.67407226563 2303.87951660156 NUM1 226 // microtubule cytoskeleton organization and biogenesis // inferred from mutant phenotype /// 30473 // nuclear migration, microtubule-mediated // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 5938 // cell cortex // inferred from direct assay 15631 // tubulin binding // inferred from physical interaction 2330.87060546875 2243.52709960938 2075.82104492188 2276.88842773438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR150W /GEN=NUM1 /DB_XREF=GI:6320353 /SEG=NC_001136:+755622,763868 /DEF=Protein required for nuclear migration, localizes to the mother cell cortex and the bud tip; may mediate interactions of dynein and cytoplasmic microtubules with the cell cortex /NOTE=Num1p; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 11121446]; go_component: cell cortex [goid GO:0005938] [evidence IDA] [pmid 11121446]; go_function: tubulin binding [goid GO:0015631] [evidence IPI] [pmid 11266443]; go_process: microtubule cytoskeleton organization and biogenesis [goid GO:0000226] [evidence IMP] [pmid 11121446]; go_process: nuclear migration (sensu Saccharomyces) [goid GO:0000065] [evidence IMP] [pmid 11121446] --- --- --- --- scop // a.4.1.Centromere-binding // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding // 4.19999980926514 /// scop // a.4.1.Centromere-binding // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding // 6.59999990463257 --- S0002557 // NUM1 SGDID:S0002557, Chr IV from 755623-763869, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023668 // cdna:GeneFinder chromosome:SGD1:IV:755623:763869:1 // ensembl // 11 // --- /// GENSCAN00000025208 // cdna:Genscan chromosome:SGD1:IV:756256:763869:1 // ensembl // 11 // --- /// YDR150W // cdna:known chromosome:SGD1:IV:755623:763869:1 gene:YDR150W // ensembl // 11 // --- --- No cerevisiae_gene -2.41839911777695 -1.03893133534005 1.0478888885863 -1.12286683438864 -1.02370874965889 Max fold change below threshold 4 2.41839911777695 Max fold change at or above threshold 0.900667895517278 0.106799027343918 -1.41748849135196 0.410021568490761 2231.77679443359 110.022586047928 0.0492982032622358 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773614_at YNR013C.S1 Low-affinity phosphate transporter; deletion of pho84, pho87, pho89, pho90, and pho91 causes synthetic lethality; transcription independent of Pi and Pho4p activity; overexpression results in vigorous growth 2.41838632904275 990.692291259766 1994.71221923828 PHO91 6817 // phosphate transport // inferred from genetic interaction 16020 // membrane // inferred from sequence similarity 15114 // phosphate transporter activity // inferred from genetic interaction /// 15114 // phosphate transporter activity // traceable author statement 2155.64379882813 891.356262207031 1090.0283203125 1833.78063964844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR013C /GEN=PHO91 /DB_XREF=GI:6324340 /SEG=NC_001146:-649027,651711 /DEF=Low-affinity phosphate transporter; deletion of pho84, pho87, pho89, pho90, and pho91 causes synthetic lethality; transcription independent of Pi and Pho4p activity; overexpression results in vigorous growth /NOTE=Pho91p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 11779791]; go_function: phosphate transporter activity [goid GO:0015114] [evidence IGI,TAS] [pmid 11779791]; go_process: phosphate transport [goid GO:0006817] [evidence IGI] [pmid 11779791] --- --- --- --- --- S0005296 // span:425-447,460-491,511-533,565-587,602-621,642-664,684-703,708-730,740-762,783-805,825-847,867-889 // numtm:12 S0005296 // PHO91 SGDID:S0005296, Chr XIV from 651712-649028, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020048 // cdna:Genscan chromosome:SGD1:XIV:649028:651712:-1 // ensembl // 11 // --- /// GENEFINDER00000020428 // cdna:GeneFinder chromosome:SGD1:XIV:649028:651712:-1 // ensembl // 11 // --- /// YNR013C // cdna:known chromosome:SGD1:XIV:649028:651712:-1 gene:YNR013C // ensembl // 11 // --- --- No cerevisiae_gene -1.14285764211041 -2.41838632904275 -1.56204027418402 -1.97760347933907 -1.17551889916418 Max fold change below threshold 4 2.41838632904275 Max fold change at or above threshold 1.10511274017334 -1.00243396208824 -0.671250881686503 0.568572103601406 1492.70225524902 599.885893519893 0.401879136586295 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775374_at YMR099C.S1 Hypothetical protein 2.41799176943363 2693.341796875 1186.79125976563 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1131.09716796875 2651.69995117188 2734.98364257813 1242.4853515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR099C /GEN=MTG1 /DB_XREF=GI:6323746 /SEG=NC_001145:-463933,464826 /DEF=Hypothetical ORF /NOTE=Ymr099cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.SCF ubiquitin ligase complex WHB domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; SCF ubiquitin ligase complex WHB domain // 3.79999995231628 --- S0004705 // YMR099C SGDID:S0004705, Chr XIII from 464826-463933, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018795 // cdna:Genscan chromosome:SGD1:XIII:463933:464826:-1 // ensembl // 11 // --- /// GENEFINDER00000021966 // cdna:GeneFinder chromosome:SGD1:XIII:463933:464826:-1 // ensembl // 11 // --- /// YMR099C // cdna:known chromosome:SGD1:XIII:463933:464826:-1 gene:YMR099C // ensembl // 11 // --- --- No cerevisiae_gene 1.72931112930917 2.34436087921063 1.26089721202839 2.41799176943363 1.09847799707056 Max fold change below threshold 4 2.41799176943363 Max fold change at or above threshold -0.928080486935816 0.816412989130836 0.911959214565794 -0.800291716760815 1940.06652832031 871.658624159296 0.449293161566974 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776311_at YCL001W-B.S1 Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 2.41737623180523 10.2602834701538 7.18412232398987 --- --- --- --- 5.35118532180786 11.4903011322021 9.03026580810547 9.01705932617188 0.0805663987994194 0.014160200022161 0.0107421996071935 0.045166015625 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL001W-B /GEN=RER1 /DB_XREF=GI:13129156 /SEG=NC_001135:+113767,114021 /DEF=Hypothetical ORF identified by homology. See FEBS Letters [2000] 487:31-36. /NOTE=Ycl001w-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007596 // YCL001W-B SGDID:S0007596, Chr III from 113767-114021, Uncharacterized ORF // sgd // 11 // --- /// YCL001W-B // cdna:known chromosome:SGD1:III:113767:114021:1 gene:YCL001W-B // ensembl // 11 // --- --- No cerevisiae_gene 2.41737623180523 2.1472441041007 1.05993860945342 1.68752627035811 1.68505831585095 Max fold change below threshold 4 2.41737623180523 Max fold change at or above threshold -1.33223520280482 1.09395985969421 0.1217472901266 0.116528052984011 8.72220289707184 2.53034717005436 0.290104139964897 APPPPP Called_P_>2EXP 4 0 APPP 1 3 0 Yes Yes 2 < x = 3
1776849_at SPAC22E12.07.S1 --- 2.41711602712519 --- --- --- --- 3.96342539787292 1.87724113464355 9.58005905151367 5.27215671539307 0.398925989866257 0.219482004642487 0.0561522990465164 0.219482004642487 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22E12.07 /GEN=rna1 /DEF=GTPase activating protein --- --- --- --- --- --- SPAC22E12.07 // |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 2.08105373671537 -2.11130329755186 1.24939293402698 2.41711602712519 1.33020208182107 Max fold change below threshold 3 2.41711602712519 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1773581_at SPAC25H1.05.S1 --- 2.41683673954715 --- --- --- --- 11.2670259475708 12.8387098312378 12.2378435134888 9.6008186340332 0.533936023712158 0.466064006090164 0.303710997104645 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25H1.05 /GEN=meu29 /DEF=meiotic expression upregulated --- --- --- --- --- --- SPAC25H1.05 // |meu29||meiotic expression upregulated|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.41683673954715 1.13949412125086 -1.40475207550015 1.08616449189303 -1.17354846258955 Max fold change below threshold 4 2.41683673954715 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778358_at YOR237W.S1 Protein implicated in the regulation of ergosterol biosynthesis; one of a seven member gene family with a common essential function and non-essential unique functions; similar to human oxysterol binding protein (OSBP) 2.41609546601895 33.0284872055054 58.7871246337891 HES1 6694 // steroid biosynthesis // inferred from genetic interaction /// 6694 // steroid biosynthesis // inferred from mutant phenotype --- 8142 // oxysterol binding // inferred from sequence similarity 61.7866249084473 40.4840507507324 25.5729236602783 55.7876243591309 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR237W /GEN=HES1 /DB_XREF=GI:6324811 /SEG=NC_001147:+781994,783298 /DEF=Protein implicated in the regulation of ergosterol biosynthesis; one of a seven member gene family with a common essential function and non-essential unique functions; similar to human oxysterol binding protein (OSBP) /NOTE=Hes1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: oxysterol binding [goid GO:0008142] [evidence ISS] [pmid 11238399]; go_process: steroid biosynthesis [goid GO:0006694] [evidence IGI,IMP] [pmid 11238399] --- --- --- --- --- --- S0005763 // HES1 SGDID:S0005763, Chr XV from 781994-783298, Verified ORF // sgd // 11 // --- /// GENSCAN00000017659 // cdna:Genscan chromosome:SGD1:XV:781994:783298:1 // ensembl // 11 // --- /// GENEFINDER00000022842 // cdna:GeneFinder chromosome:SGD1:XV:781994:783298:1 // ensembl // 11 // --- /// YOR237W // cdna:known chromosome:SGD1:XV:781994:783298:1 gene:YOR237W // ensembl // 11 // --- --- No cerevisiae_gene 2.28377082091719 -1.52619670617643 1.15938310277716 -2.41609546601895 -1.10753281965724 Max fold change below threshold 4 2.41609546601895 Max fold change at or above threshold 0.976859253687841 -0.333667474276817 -1.25099466917082 0.607802889759794 45.9078059196472 16.2549711525527 0.354078589183807 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776765_at SPBC1215.02c.S1 --- 2.41591789688939 --- --- --- --- 0.238122060894966 0.575283348560333 0.477720826864243 0.169755160808563 0.725830018520355 0.398925989866257 0.725830018520355 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1215.02c /DEF=N-acetyltransferase complex (non catalytic subunit) --- --- --- --- --- --- SPBC1215.02c // |arm1|mdm20|N-acetyltransferase complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.59985384322665 2.41591789688939 -1.0415286389236 2.00620146268162 -1.40273827176013 Max fold change below threshold 0 2.41591789688939 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Ec-bioB-5_at AFFX-r2-Ec-bioB-5 --- 2.4152986822834 --- --- --- --- 334.469482421875 372.050720214844 138.479553222656 144.00439453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2071-2304 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --- --- --- --- --- --- J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioB gene biotin synthetase corresponding to nucleotides 2393-2682 of J04423 /LEN=1114 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-r2-Ec-bioB-5 // E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2071-2304 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// AFFX-r2-Ec-bioB-5 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioB-5 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioB-5 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioB-5 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioB-5 // --- // gb // --- // --- /// AFFX-r2-Ec-bioB-5 // E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2071-2304 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-5 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioB-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-5 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-5 // --- // affx // --- // --- /// AFFX-r2-Ec-bioB-5 // --- // affx // --- // --- --- AFFX_control No -1.58442690185799 1.11236073772963 -1.7225398840135 -2.4152986822834 -2.32263385788059 Max fold change below threshold 4 2.4152986822834 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776651_at YKR004C.S1 Non-essential protein of unknown function 2.41515841241101 474.674591064453 257.469444274902 ECM9 7047 // cell wall organization and biogenesis // inferred from mutant phenotype --- --- 251.591842651367 607.634155273438 341.715026855469 263.347045898438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR004C /GEN=ECM9 /DB_XREF=GI:37362672 /SEG=NC_001143:-446442,447679 /DEF=Non-essential protein of unknown function /NOTE=Ecm9p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584] --- --- --- --- --- --- S0001712 // ECM9 SGDID:S0001712, Chr XI from 447679-447454,447349-446442, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YKR004C // cdna:known chromosome:SGD1:XI:446442:447679:-1 gene:YKR004C // ensembl // 11 // --- AY245792 // gb // 3 // Cross Hyb Matching Probes No cerevisiae_gene -1.08860689041387 2.41515841241101 1.38420250500915 1.35821186909063 1.04672330836799 Max fold change below threshold 4 2.41515841241101 Max fold change at or above threshold -0.689908138024173 1.45576021826219 -0.146785993101557 -0.619066087136455 366.072017669678 165.935388653582 0.453286185898298 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772308_at YAL016C-B.S1 Identified by fungal homology and RT-PCR 2.4146164525887 282.409393310547 377.602844238281 --- --- --- --- 400.720367431641 315.778472900391 249.040313720703 354.485321044922 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL016C-B /GEN=PSK1 /DB_XREF=GI:33438757 /SEG=NC_001133:-124310,124495 /DEF=Identified by fungal homology and RT-PCR /NOTE=Yal016c-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028528 // YAL016C-B SGDID:S0028528, Chr I from 124493-124308, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YAL016C-B // cdna:known chromosome:SGD1:I:124308:124493:-1 gene:YAL016C-B // ensembl // 11 // --- --- No cerevisiae_gene -2.4146164525887 -1.26899203657256 -1.36528901542079 -1.60905823416624 -1.13042866274528 Max fold change below threshold 4 2.4146164525887 Max fold change at or above threshold 1.10179316445251 -0.22167983494014 -1.26152186096171 0.381408531449336 330.006118774414 64.1810558811779 0.194484442044697 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771304_at YLR222C.S1 Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA 2.41457401777847 173.069404602051 410.017288208008 UTP13 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction 30515 // snoRNA binding // inferred from physical interaction 380.813537597656 188.424224853516 157.714584350586 439.221038818359 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR222C /GEN=UTP13 /DB_XREF=GI:6323251 /SEG=NC_001144:-579320,581773 /DEF=Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA /NOTE=Utp13p; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: snoRNA binding [goid GO:0030515] [evidence IPI] [pmid 12068309]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP,IPI] [pmid 12068309] --- --- --- --- --- --- S0004212 // UTP13 SGDID:S0004212, Chr XII from 581773-579320, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017992 // cdna:Genscan chromosome:SGD1:XII:579320:581773:-1 // ensembl // 11 // --- /// GENEFINDER00000024627 // cdna:GeneFinder chromosome:SGD1:XII:579320:581773:-1 // ensembl // 11 // --- /// YLR222C // cdna:known chromosome:SGD1:XII:579320:581773:-1 gene:YLR222C // ensembl // 11 // --- --- No cerevisiae_gene 1.74946584116133 -2.02104340826509 -1.32887644668487 -2.41457401777847 1.15337559055585 Max fold change below threshold 4 2.41457401777847 Max fold change at or above threshold 0.640254340298653 -0.739580191989036 -0.95983266774083 1.05915851943121 291.543346405029 139.429263612623 0.478245397577757 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774819_at YLR277C.S1 Putative endonuclease, subunit of the mRNA cleavage and polyadenylation specificity complex required for 3' processing of mRNAs 2.41426633538756 254.640533447266 614.583160400391 YSH1 6378 // mRNA polyadenylylation // inferred from direct assay /// 6378 // mRNA polyadenylylation // traceable author statement /// 6379 // mRNA cleavage // inferred from direct assay /// 6379 // mRNA cleavage // traceable author statement 5847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from physical interaction /// 5849 // mRNA cleavage factor complex // inferred from physical interaction 3723 // RNA binding // inferred from curator /// 4521 // endoribonuclease activity // inferred from mutant phenotype /// 4521 // endoribonuclease activity // inferred from sequence similarity 586.640563964844 242.989166259766 266.291900634766 642.525756835938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR277C /GEN=YSH1 /DB_XREF=GI:6323307 /SEG=NC_001144:-697158,699497 /DEF=subunit of Polyadenylation factor I (PF I) /NOTE=Ysh1p; go_component: mRNA cleavage and polyadenylation specificity factor complex [goid GO:0005847] [evidence TAS] [pmid 11344258]; go_component: mRNA cleavage factor complex [goid GO:0005849] [evidence IPI] [pmid 9099738]; go_function: cleavage/polyadenylation specificity factor activity [goid GO:0030364] [evidence IPI,TAS] [pmid 11344258]; go_process: mRNA cleavage [goid GO:0006379] [evidence IDA,TAS] [pmid 11344258]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IDA,TAS] [pmid 11344258] --- --- --- --- --- --- S0004267 // YSH1 SGDID:S0004267, Chr XII from 699497-697158, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018036 // cdna:Genscan chromosome:SGD1:XII:697158:699395:-1 // ensembl // 11 // --- /// GENEFINDER00000024877 // cdna:GeneFinder chromosome:SGD1:XII:697158:699395:-1 // ensembl // 11 // --- /// YLR277C // cdna:known chromosome:SGD1:XII:697158:699497:-1 gene:YLR277C // ensembl // 11 // --- --- No cerevisiae_gene -2.1850196359255 -2.41426633538756 1.10196359181103 -2.20299814814666 1.09526309004851 Max fold change below threshold 4 2.41426633538756 Max fold change at or above threshold 0.726444029073613 -0.915637222446154 -0.804288968134173 0.993482161506715 434.611846923828 209.27794978904 0.481528405795434 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775334_at YBL025W.S1 subunit of UAF (upstream activation factor); involved in promoting high level transcription of rDNA; Upstream activation factor subunit 2.41415355224716 121.146995544434 242.202102661133 RRN10 6360 // transcription from RNA polymerase I promoter // traceable author statement 500 // RNA polymerase I upstream activating factor complex // traceable author statement 182 // ribosomal DNA (rDNA) binding // traceable author statement /// 3701 // RNA polymerase I transcription factor activity // traceable author statement 223.136474609375 92.4284515380859 149.865539550781 261.267730712891 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL025W /GEN=RRN10 /DB_XREF=GI:6319446 /SEG=NC_001134:+171446,171883 /DEF=subunit of UAF (upstream activation factor); involved in promoting high level transcription of rDNA /NOTE=Rrn10p; go_component: RNA polymerase I upstream activating factor complex [goid GO:0000500] [evidence TAS] [pmid 11500378]; go_function: RNA polymerase I transcription factor activity [goid GO:0003701] [evidence TAS] [pmid 9932458]; go_function: ribosomal DNA (rDNA) binding [goid GO:0000182] [evidence TAS] [pmid 11500378]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS] [pmid 9932458] --- --- --- --- --- --- S0000121 // RRN10 SGDID:S0000121, Chr II from 171484-171921, Verified ORF // sgd // 9 // --- /// GENSCAN00000021117 // cdna:Genscan chromosome:SGD1:II:171484:171921:1 // ensembl // 9 // --- /// YBL025W // cdna:known chromosome:SGD1:II:171484:171921:1 gene:YBL025W // ensembl // 9 // --- --- No cerevisiae_gene 1.13506347876893 -2.41415355224716 1.40067133167828 -1.48891116182027 1.17088759769226 Max fold change below threshold 4 2.41415355224716 Max fold change at or above threshold 0.550290478174203 -1.18449100238364 -0.422175161012145 1.05637568522158 181.674549102783 75.3455259559596 0.414728019571594 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779659_at YBR056W-A.S1 --- 2.4140044981816 5579.14233398438 2805.50524902344 --- --- --- --- 2919.03979492188 7046.5751953125 4111.70947265625 2691.970703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR056W-A /GEN=PRP6 /DB_XREF=GI:33438765 /SEG=NC_001134:+351215,351415 /DEF=Ybr056w-ap /NOTE=go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028736 // YBR056W-A SGDID:S0028736, Chr II from 351253-351453, Uncharacterized ORF // sgd // 11 // --- /// YBR056W-A // cdna:known chromosome:SGD1:II:351253:351453:1 gene:YBR056W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.06889857278792 2.4140044981816 1.27033258458429 1.40858287708486 -1.08435050631616 Max fold change below threshold 4 2.4140044981816 Max fold change at or above threshold -0.635965022197012 1.42560816145626 -0.0402642986269904 -0.749378840632255 4192.32379150391 2002.12897272767 0.477570214587229 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777863_at YPR034W.S1 Actin-related protein involved in transcriptional regulation; subunit of the chromatin remodeling Snf/Swi complex 2.41397357806964 257.825584411621 543.52880859375 ARP7 6338 // chromatin remodeling // traceable author statement 5634 // nucleus // inferred from direct assay /// 16514 // SWI/SNF complex // inferred from physical interaction /// 16585 // chromatin remodeling complex // traceable author statement 16251 // general RNA polymerase II transcription factor activity // traceable author statement 514.00048828125 212.927139282227 302.724029541016 573.05712890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR034W /GEN=ARP7 /DB_XREF=GI:6325291 /SEG=NC_001148:+639520,640953 /DEF=involved in transcriptional regulation /NOTE=Arp7p; go_component: SWI/SNF complex [goid GO:0016514] [evidence IPI] [pmid 9726966]; go_component: nucleosome remodeling complex [goid GO:0005679] [evidence TAS] [pmid 9048886]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11011149]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9048886]; go_process: chromatin remodeling [goid GO:0006338] [evidence TAS] [pmid 9048886] --- --- --- --- --- --- S0006238 // ARP7 SGDID:S0006238, Chr XVI from 639522-640955, Verified ORF // sgd // 11 // --- /// GENSCAN00000017213 // cdna:Genscan chromosome:SGD1:XVI:639681:640955:1 // ensembl // 11 // --- /// YPR034W // cdna:known chromosome:SGD1:XVI:639522:640955:1 gene:YPR034W // ensembl // 11 // --- GENEFINDER00000020776 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 1.19641640851433 -2.41397357806964 -1.06969933749876 -1.69791770101821 1.1148960788393 Max fold change below threshold 4 2.41397357806964 Max fold change at or above threshold 0.663925471827093 -1.09996844752118 -0.573876751824871 1.00991972751896 400.677196502686 170.68676619185 0.425995708469787 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771851_at YHR181W.S1 Component of Sed5p vesicles 2.41306894005537 621.351196289063 1470.2412109375 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 1454.28186035156 602.669006347656 640.033386230469 1486.20056152344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR181W /GEN=OYE2 /DB_XREF=GI:6321975 /SEG=NC_001140:+467226,467912 /DEF=Sed5-Vesicle Protein of 26 kDa /NOTE=Yhr181wp --- --- --- --- --- S0001224 // span:5-27,47-66,86-108,140-162 // numtm:4 S0001224 // SVP26 SGDID:S0001224, Chr VIII from 467227-467913, Uncharacterized ORF // sgd // 11 // --- /// YHR181W // cdna:known chromosome:SGD1:VIII:467227:467913:1 gene:YHR181W // ensembl // 11 // --- --- No cerevisiae_gene -1.02911866810269 -2.41306894005537 1.00027632571079 -2.27219687541095 1.02194808450967 Max fold change below threshold 4 2.41306894005537 Max fold change at or above threshold 0.832765011047299 -0.903387473315128 -0.827214056421272 0.897836518689102 1045.79620361328 490.517314391683 0.46903719166021 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771444_at YBR079C.S1 Subunit of the core complex of translation initiation factor 3(eIF3), essential for translation; part of a subcomplex (Prt1p-Rpg1p-Nip1p) that stimulates binding of mRNA and tRNA(i)Met to ribosomes 2.4128048898704 1284.31567382813 1092.02954101563 RPG1 6413 // translational initiation // traceable author statement /// 6413 // translational initiation // inferred from direct assay 131 // incipient bud site // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5840 // ribosome // traceable author statement /// 5852 // eukaryotic translation initiation factor 3 complex // inferred from physical interaction /// 5852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay 3743 // translation initiation factor activity // traceable author statement /// 3743 // translation initiation factor activity // inferred from direct assay 1038.89831542969 1137.17895507813 1431.45239257813 1145.16076660156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR079C /GEN=RPG1 /DB_XREF=GI:6319553 /SEG=NC_001134:-395340,398234 /DEF=Subunit of the core complex of translation initiation factor 3(eIF3), essential for translation; part of a subcomplex (Prt1p-Rpg1p-Nip1p) that stimulates binding of mRNA and tRNA(i)Met to ribosomes /NOTE=Rpg1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: eukaryotic translation initiation factor 3 complex [goid GO:0005852] [evidence IDA,IPI] [pmid 9671501]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 11302750]; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 9841679]; go_function: translation initiation factor activity [goid GO:0003743] [evidence IDA] [pmid 9671501]; go_function: translation initiation factor activity [goid GO:0003743] [evidence TAS] [pmid 9841679]; go_process: translational initiation [goid GO:0006413] [evidence IDA] [pmid 9671501]; go_process: translational initiation [goid GO:0006413] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0000283 // RPG1 SGDID:S0000283, Chr II from 398271-395377, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021202 // cdna:Genscan chromosome:SGD1:II:395377:398271:-1 // ensembl // 11 // --- /// GENEFINDER00000022183 // cdna:GeneFinder chromosome:SGD1:II:395377:398271:-1 // ensembl // 11 // --- /// YBR079C // cdna:known chromosome:SGD1:II:395377:398271:-1 gene:YBR079C // ensembl // 11 // --- --- No cerevisiae_gene 2.4128048898704 1.09460082684588 -1.13862372659721 1.37785611095738 1.10228378426807 Max fold change below threshold 4 2.4128048898704 Max fold change at or above threshold -0.882069821042401 -0.30132423471487 1.43755333682801 -0.254159281070734 1188.17260742188 169.231832255388 0.142430343199538 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779697_at YGR134W.S1 Part of the evolutionarily-conserved CCR4-NOT transcriptional regulatory complex involved in controlling mRNA initiation, elongation, and degradation 2.41267948290834 315.233474731445 769.877227783203 CAF130 6357 // regulation of transcription from RNA polymerase II promoter // inferred from physical interaction 30014 // CCR4-NOT complex // inferred from physical interaction --- 709.881164550781 294.229370117188 336.237579345703 829.873291015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR134W /GEN=CAF130 /DB_XREF=GI:6321573 /SEG=NC_001139:+757773,761141 /DEF=CCR4 Associated Factor 130 kDa /NOTE=Caf130p; go_component: CCR4-NOT complex [goid GO:0030014] [evidence IPI] [pmid 11733989]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IPI] [pmid 11733989] --- --- --- --- --- S0003366 // span:65-84 // numtm:1 S0003366 // CAF130 SGDID:S0003366, Chr VII from 757775-761143, Verified ORF // sgd // 11 // --- /// GENSCAN00000019444 // cdna:Genscan chromosome:SGD1:VII:757775:761143:1 // ensembl // 11 // --- /// GENEFINDER00000021645 // cdna:GeneFinder chromosome:SGD1:VII:758858:761143:1 // ensembl // 11 // --- /// YGR134W // cdna:known chromosome:SGD1:VII:757775:761143:1 gene:YGR134W // ensembl // 11 // --- --- No cerevisiae_gene -1.34416564588974 -2.41267948290834 -1.10763451838721 -2.11124873648021 1.16903128644183 Max fold change below threshold 4 2.41267948290834 Max fold change at or above threshold 0.625351628154315 -0.928075911076863 -0.771077409053586 1.07380169197613 542.555351257324 267.570764606959 0.493167681393037 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769826_at SPCC1322.03.S1 --- 2.41266351107307 --- --- --- --- 21.5229949951172 21.196439743042 24.0488719940186 8.92084407806396 0.0952147990465164 0.111571997404099 0.0461426004767418 0.194580003619194 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1322.03 /DEF=conserved fungal protein --- --- --- --- --- --- SPCC1322.03 // |||membrane transporter |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.32252264378937 -1.01540613688119 -1.47959691966335 1.11735713359012 -2.41266351107307 Max fold change below threshold 4 2.41266351107307 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1772686_at YOL117W.S1 Subunit of the COP9 signalosome (CSN) complex that cleaves the ubiquitin-like protein Nedd8 from SCF ubiquitin ligases; plays a role in the mating pheromone response 2.41219508580699 1029.92416381836 472.410446166992 RRI2 338 // protein deneddylation // inferred from mutant phenotype /// 754 // adaptation to pheromone during conjugation with cellular fusion // inferred from genetic interaction 8180 // signalosome complex // traceable author statement /// 8180 // signalosome complex // inferred from direct assay --- 436.579223632813 1006.73406982422 1053.1142578125 508.241668701172 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL117W /GEN=RRI2 /DB_XREF=GI:6324455 /SEG=NC_001147:+97550,99487 /DEF=subunit of COP9 Signalosome (CSN) like protein complex that cleaves the ubiquitin-like protein Rub1 from Cdc53 /NOTE=Rri2p; go_component: signalosome complex [goid GO:0008180] [evidence TAS] [pmid 12186635]; go_component: signalosome complex [goid GO:0008180] [evidence IDA] [pmid 12446563]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: adaptation to pheromone during conjugation with cellular fusion [goid GO:0000754] [evidence IGI] [pmid 12446563]; go_process: protein deneddylation [goid GO:0000338] [evidence IMP] [pmid 12446563] --- --- --- --- scop // a.3.1.Quinohemoprotein amine dehydrogenase A chain, domains 1 an // All alpha proteins; Cytochrome c; Cytochrome c; Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 // 1.70000004768372 --- S0005477 // RRI2 SGDID:S0005477, Chr XV from 97550-99487, Verified ORF // sgd // 11 // --- /// GENSCAN00000017372 // cdna:Genscan chromosome:SGD1:XV:97550:99487:1 // ensembl // 11 // --- /// GENEFINDER00000022878 // cdna:GeneFinder chromosome:SGD1:XV:97550:99487:1 // ensembl // 11 // --- /// YOL117W // cdna:known chromosome:SGD1:XV:97550:99487:1 gene:YOL117W // ensembl // 11 // --- --- No cerevisiae_gene -1.10488766132415 2.30595964106377 1.56677348560321 2.41219508580699 1.1641453399272 Max fold change below threshold 4 2.41219508580699 Max fold change at or above threshold -0.97166560868276 0.78936695578451 0.932621059365447 -0.750322406467197 751.167304992676 323.761671246485 0.431011399317548 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772676_at YHR089C.S1 Protein component of the H/ACA snoRNP pseudouridylase complex, involved in the modification and cleavage of the 18S pre-rRNA 2.41120338677493 738.583068847656 1411.1455078125 GAR1 154 // rRNA modification // traceable author statement /// 6365 // 35S primary transcript processing // traceable author statement 5730 // nucleolus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction 3723 // RNA binding // inferred from direct assay 1426.95263671875 591.801025390625 885.365112304688 1395.33837890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR089C /GEN=GAR1 /DB_XREF=GI:6321881 /SEG=NC_001140:-282682,283299 /DEF=Protein component of the H/ACA snoRNP pseudouridylase complex, involved in the modification and cleavage of the 18S pre-rRNA /NOTE=Gar1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 1531632]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 1531632]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 9556561]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: rRNA modification [goid GO:0000154] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0001131 // GAR1 SGDID:S0001131, Chr VIII from 283299-282682, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016631 // cdna:Genscan chromosome:SGD1:VIII:282682:283299:-1 // ensembl // 11 // --- /// GENEFINDER00000020131 // cdna:GeneFinder chromosome:SGD1:VIII:282682:283299:-1 // ensembl // 11 // --- /// YHR089C // cdna:known chromosome:SGD1:VIII:282682:283299:-1 gene:YHR089C // ensembl // 11 // --- --- No cerevisiae_gene 2.20745456044845 -2.41120338677493 -1.19271611967162 -1.61171093923529 -1.0226570545829 Max fold change below threshold 4 2.41120338677493 Max fold change at or above threshold 0.865968577355409 -1.18810408948426 -0.466077144056976 0.788212656185827 1074.86428833008 406.583284423458 0.378264762200939 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777938_at YDL209C.S1 Protein involved in pre-mRNA splicing, component of a complex containing Cef1p; interacts with Prp19p; contains an RNA recognition motif; has similarity to S. pombe Cwf2p 2.41016314438985 160.701606750488 373.978668212891 CWC2 398 // nuclear mRNA splicing, via spliceosome // inferred from mutant phenotype /// 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 5681 // spliceosome complex // inferred from direct assay --- 334.076171875 182.791778564453 138.611434936523 413.881164550781 0.00415039015933871 0.0239257998764515 0.0461426004767418 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL209C /GEN=CWC2 /DB_XREF=GI:6319992 /SEG=NC_001136:-86208,87227 /DEF=Protein involved in pre-mRNA splicing, component of a complex containing Cef1p; interacts with Prp19p; contains an RNA recognition motif; has similarity to S. pombe Cwf2p /NOTE=Cwc2p; go_component: spliceosome complex [goid GO:0005681] [evidence IDA] [pmid 12088152]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IMP,IPI] [pmid 12088152] --- --- --- --- --- --- S0002368 // CWC2 SGDID:S0002368, Chr IV from 87227-86208, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023822 // cdna:GeneFinder chromosome:SGD1:IV:86208:86858:-1 // ensembl // 11 // --- /// GENSCAN00000024948 // cdna:Genscan chromosome:SGD1:IV:86208:86990:-1 // ensembl // 11 // --- /// YDL209C // cdna:known chromosome:SGD1:IV:86208:87227:-1 gene:YDL209C // ensembl // 11 // --- --- No cerevisiae_gene 1.34419888977883 -1.82763237219229 -1.03487850939789 -2.41016314438985 1.2388826243664 Max fold change below threshold 4 2.41016314438985 Max fold change at or above threshold 0.518767119528924 -0.657229771219203 -1.0006620685083 1.13912472019858 267.340137481689 128.643531714021 0.481197970966227 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1777945_at YGR138C.S1 Polyamine transport protein specific for spermine; localizes to the plasma membrane; transcription of TPO2 is regulated by Haa1p; member of the major facilitator superfamily 2.40946670105525 1476.14660644531 663.352203369141 TPO2 15846 // polyamine transport // inferred from mutant phenotype 5774 // vacuolar membrane // inferred from mutant phenotype /// 5886 // plasma membrane // inferred from direct assay 297 // spermine transporter activity // inferred from mutant phenotype 633.509094238281 1425.87414550781 1526.41906738281 693.1953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR138C /GEN=TPO2 /DB_XREF=GI:6321577 /SEG=NC_001139:-763765,765609 /DEF=Polyamine transport protein /NOTE=Tpo2p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12562762]; go_component: vacuolar membrane [goid GO:0005774] [evidence IMP] [pmid 11171066]; go_function: spermine transporter activity [goid GO:0000297] [evidence IMP] [pmid 11171066]; go_process: polyamine transport [goid GO:0015846] [evidence IMP] [pmid 11171066] --- --- --- --- --- S0003370 // span:175-197,207-229,236-258,262-284,296-318,333-355,402-424,439-458,479-501,505-527,540-562,572-594 // numtm:12 S0003370 // TPO2 SGDID:S0003370, Chr VII from 765611-763767, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019447 // cdna:Genscan chromosome:SGD1:VII:763767:765611:-1 // ensembl // 11 // --- /// GENEFINDER00000021619 // cdna:GeneFinder chromosome:SGD1:VII:763767:765611:-1 // ensembl // 11 // --- /// YGR138C // cdna:known chromosome:SGD1:VII:763767:765611:-1 gene:YGR138C // ensembl // 11 // --- --- No cerevisiae_gene -1.00191281572053 2.25075560631415 -1.19226908760756 2.40946670105525 1.09421525090099 Max fold change below threshold 4 2.40946670105525 Max fold change at or above threshold -0.92484797340297 0.754999564616248 0.968159066289676 -0.798310657502953 1069.74940490723 471.688670153866 0.440933800000359 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771542_at YNL113W.S1 RNA polymerase subunit, common to RNA polymerases I and III 2.40935739042034 883.34423828125 806.783508300781 RPC19 6360 // transcription from RNA polymerase I promoter // traceable author statement /// 6383 // transcription from RNA polymerase III promoter // traceable author statement 5666 // DNA-directed RNA polymerase III complex // traceable author statement /// 5736 // DNA-directed RNA polymerase I complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 807.994262695313 855.453430175781 911.235046386719 805.57275390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL113W /GEN=RPC19 /DB_XREF=GI:6324215 /SEG=NC_001146:+412771,413199 /DEF=RNA polymerase subunit, common to RNA polymerases I and III /NOTE=Rpc19p; go_component: DNA-directed RNA polymerase I complex [goid GO:0005736] [evidence TAS] [pmid 8246845]; go_component: DNA-directed RNA polymerase III complex [goid GO:0005666] [evidence TAS] [pmid 8246845]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 8246845]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS]; go_process: transcription from Pol III promoter [goid GO:0006383] [evidence TAS] --- --- --- --- --- --- S0005057 // RPC19 SGDID:S0005057, Chr XIV from 412771-413199, Verified ORF // sgd // 11 // --- /// GENSCAN00000019942 // cdna:Genscan chromosome:SGD1:XIV:412771:413199:1 // ensembl // 11 // --- /// GENEFINDER00000020660 // cdna:GeneFinder chromosome:SGD1:XIV:412771:413199:1 // ensembl // 11 // --- /// YNL113W // cdna:known chromosome:SGD1:XIV:412771:413199:1 gene:YNL113W // ensembl // 11 // --- YNL114C // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene 2.40935739042034 1.05873701048588 -1.10060379419701 1.12777415441914 -1.00300594673457 Max fold change below threshold 4 2.40935739042034 Max fold change at or above threshold -0.745364579770794 0.208904479355813 1.33051434409015 -0.794054243675169 845.063873291016 49.7335285332479 0.0588517981955207 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778468_at SPBC56F2.11.S1 --- 2.4087968699784 --- --- --- --- 4.9867377281189 12.012038230896 7.0170316696167 7.22452354431152 0.274170011281967 0.018554700538516 0.24609400331974 0.303710997104645 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC56F2.11 /GEN=met6 /DEF=homoserine O-acetyltransferase --- --- --- --- --- --- SPBC56F2.11 // |met6||homoserine O-acetyltransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.96319893793741 2.4087968699784 -1.25912603111182 1.40713870513974 1.4487474453638 Max fold change below threshold 4 2.4087968699784 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1778691_at YGR074W.S1 Homolog of human core snRNP protein D1, involved in snRNA maturation; U6 snRNP protein 2.40810242095151 291.657623291016 702.593627929688 SMD1 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 243 // commitment complex // inferred from physical interaction /// 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 3729 // mRNA binding // inferred from physical interaction /// 31202 // RNA splicing factor activity, transesterification mechanism // inferred from physical interaction 654.691528320313 311.444946289063 271.870300292969 750.495727539063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR074W /GEN=SMD1 /DB_XREF=GI:6321510 /SEG=NC_001139:+635714,636154 /DEF=Homolog of human core snRNP protein D1, involved in snRNA maturation /NOTE=Smd1p; go_component: commitment complex [goid GO:0000243] [evidence IPI] [pmid 10072386]; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence IDA] [pmid 10377396]; go_function: mRNA binding [goid GO:0003729] [evidence IPI] [pmid 10072386]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10072386] --- --- --- --- --- --- S0003306 // SMD1 SGDID:S0003306, Chr VII from 635716-636156, Verified ORF // sgd // 11 // --- /// YGR074W // cdna:known chromosome:SGD1:VII:635716:636156:1 gene:YGR074W // ensembl // 11 // --- GENEFINDER00000021771 // ensembl // 8 // Cross Hyb Matching Probes /// YGR073C // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene 1.57357754175513 -2.10210997520143 1.06602855031657 -2.40810242095151 1.146334869285 Max fold change below threshold 4 2.40810242095151 Max fold change at or above threshold 0.653804744098111 -0.770464338665223 -0.934675572525108 1.05133516709222 497.125625610352 240.99840836627 0.484783716531171 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769847_at SPAC31G5.07.S1 --- 2.40715875415381 --- --- --- --- 7.99578428268433 5.7561674118042 6.48843479156494 3.32166886329651 0.366210997104645 0.125732421875 0.0676269978284836 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31G5.07 /DEF=conserved fungal protein --- --- --- --- --- --- SPAC31G5.07 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.99191385165254 -1.38908126026483 -1.02146054748647 -1.23231326807491 -2.40715875415381 Max fold change below threshold 4 2.40715875415381 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779086_at SPAPB18E9.02c.S1 --- 2.40702724829345 --- --- --- --- 9.30196666717529 8.73671817779541 9.568284034729 3.86450409889221 0.0239257998764515 0.366210997104645 0.0561522990465164 0.194580003619194 P A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB18E9.02c /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPAPB18E9.02c // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.15098145587583 -1.06469803396159 -1.24778288635422 1.02863022165984 -2.40702724829345 Max fold change below threshold 4 2.40702724829345 Max fold change at or above threshold PAAPMA No 4 0 PAMA 2 1 1 No No x = 1
1779128_at YPR139C.S1 Cytoplasmic protein of unknown function involved in vacuolar protein sorting. 2.40654233513451 191.875801086426 380.000183105469 VPS66 6623 // protein-vacuolar targeting // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 361.559631347656 150.240295410156 233.511306762695 398.440734863281 0.000244141003349796 0.00415039015933871 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR139C /GEN=VPS66 /DB_XREF=GI:6325397 /SEG=NC_001148:-813150,814052 /DEF=Vps66p /NOTE=go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 12134085] --- --- --- --- --- S0006343 // span:31-53 // numtm:1 S0006343 // VPS66 SGDID:S0006343, Chr XVI from 814054-813152, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017290 // cdna:Genscan chromosome:SGD1:XVI:813152:813910:-1 // ensembl // 11 // --- /// YPR139C // cdna:known chromosome:SGD1:XVI:813152:814054:-1 gene:YPR139C // ensembl // 11 // --- --- No cerevisiae_gene -1.66394788661192 -2.40654233513451 1.24592554128748 -1.54836027582634 1.10200558999952 Max fold change below threshold 4 2.40654233513451 Max fold change at or above threshold 0.658718402374012 -1.1820237018292 -0.456673813821145 0.979979113276335 285.937992095947 114.801163864816 0.401489718184405 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779772_at YLL012W.S1 Steryl ester hydrolase, one of three gene products (Yeh1p, Yeh2p, Tgl1p) responsible for steryl ester hydrolase activity and involved in sterol homeostasis; localized to lipid particle membranes 2.40652853557508 359.855346679688 512.186080932617 YEH1 16125 // sterol metabolism // inferred from mutant phenotype 5811 // lipid particle // inferred from direct assay /// 16021 // integral to membrane // inferred from direct assay 4771 // sterol esterase activity // inferred from direct assay 463.440216064453 335.101165771484 384.609527587891 560.931945800781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL012W /GEN=PUF3 /DB_XREF=GI:6323017 /SEG=NC_001144:+125533,127254 /DEF=Hypothetical ORF /NOTE=Yll012wp; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003935 // span:13-35 // numtm:1 S0003935 // YLL012W SGDID:S0003935, Chr XII from 125533-127254, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017722 // cdna:Genscan chromosome:SGD1:XII:125533:127254:1 // ensembl // 11 // --- /// GENEFINDER00000024641 // cdna:GeneFinder chromosome:SGD1:XII:125533:127254:1 // ensembl // 11 // --- /// YLL012W // cdna:known chromosome:SGD1:XII:125533:127254:1 gene:YLL012W // ensembl // 11 // --- --- No cerevisiae_gene 2.40652853557508 -1.3829859857321 -1.60766965742873 -1.20496291126992 1.21036527767105 Max fold change below threshold 4 2.40652853557508 Max fold change at or above threshold 0.278009009879013 -1.02323314851793 -0.521263035433753 1.26648717407267 436.020713806152 98.6281065863063 0.226200507139564 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779925_at SPBC29A3.07c.S1 --- 2.40636705149016 --- --- --- --- 3.39280247688293 5.79158115386963 1.40992724895477 3.02337217330933 0.432372987270355 0.24609400331974 0.366210997104645 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A3.07c /DEF=RNA-binding protein --- --- --- --- --- --- SPBC29A3.07c // |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.2600303082581 1.70701984372239 1.64056429718115 -2.40636705149016 -1.12219147441886 Max fold change below threshold 3 2.40636705149016 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778552_at YML050W.S1 Hypothetical protein 2.40607635862422 164.610008239746 292.550857543945 --- --- --- --- 261.994018554688 108.888488769531 220.331527709961 323.107696533203 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML050W /GEN=GAL80 /DB_XREF=GI:6323591 /SEG=NC_001145:+173139,174074 /DEF=Hypothetical ORF /NOTE=Yml050wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004514 // YML050W SGDID:S0004514, Chr XIII from 173139-174074, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018675 // cdna:Genscan chromosome:SGD1:XIII:173139:174074:1 // ensembl // 11 // --- /// YML050W // cdna:known chromosome:SGD1:XIII:173139:174074:1 gene:YML050W // ensembl // 11 // --- --- No cerevisiae_gene -1.06044916742273 -2.40607635862422 1.80704203368193 -1.18909001030288 1.23326363829088 Max fold change below threshold 4 2.40607635862422 Max fold change at or above threshold 0.37015116518387 -1.32593110560016 -0.0913802515951298 1.04716019201142 228.580432891846 90.2701080145023 0.394916165274804 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779246_at SPAC922.07c.S1 --- 2.40601229201596 --- --- --- --- 0.269815891981125 0.457425832748413 0.561902463436127 0.585009753704071 0.99804699420929 0.919434010982513 0.753906011581421 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC922.07c /DEF=aldehyde dehydrogenase (predicted) --- --- --- --- --- --- SPAC922.07c // |||aldehyde dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.45546190381884 1.69532576228094 2.40601229201596 2.08254028074608 2.16818123428028 Max fold change below threshold 0 2.40601229201596 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771852_at SPBC12C2.12c.S1 --- 2.40577597987982 --- --- --- --- 4.89535808563232 11.7771348953247 7.77385950088501 7.0229434967041 0.24609400331974 0.00292969006113708 0.0561522990465164 0.018554700538516 A P M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12C2.12c /GEN=glo1 /DEF=glyoxalase I (PMID 15042280) --- --- --- --- --- --- SPBC12C2.12c // |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.45500467306574 2.40577597987982 1.29788697204741 1.58800630411511 1.43461282583518 Max fold change below threshold 4 2.40577597987982 Max fold change at or above threshold AAPAMP No 3 0 APMP 1 2 1 No No 1 < x = 2
1777102_at YAL030W.S1 Vesicle membrane receptor protein (v-SNARE) involved in the fusion between Golgi-derived secretory vesicles with the plasma membrane; proposed to be involved in endocytosis; member of the synaptobrevin/VAMP family of R-type v-SNARE proteins 2.40569313225682 837.686492919922 1634.19598388672 SNC1 6893 // Golgi to plasma membrane transport // traceable author statement /// 6897 // endocytosis // traceable author statement /// 6897 // endocytosis // inferred from mutant phenotype /// 6906 // vesicle fusion // traceable author statement 30133 // transport vesicle // inferred from direct assay 5485 // v-SNARE activity // traceable author statement 1607.36010742188 668.1484375 1007.22454833984 1661.03186035156 0.000244141003349796 0.000244140625 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL030W /GEN=SNC1 /DB_XREF=GI:6319289 /SEG=NC_001133:+87289,87755 /DEF=Involved in mediating targeting and transport of secretory proteins; forms a complex with Snc2p and Sec9p /NOTE=Snc1p; go_component: transport vesicle [goid GO:0030133] [evidence IDA] [pmid 9195971]; go_function: v-SNARE activity [goid GO:0005485] [evidence TAS] [pmid 10047442]; go_process: Golgi to plasma membrane transport [goid GO:0006893] [evidence TAS] [pmid 10047442]; go_process: endocytosis [goid GO:0006897] [evidence TAS] [pmid 10047442]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 10047442] --- --- --- --- --- S0000028 // span:94-116 // numtm:1 S0000028 // SNC1 SGDID:S0000028, Chr I from 87287-87388,87502-87753, intron sequence removed, Verified ORF // sgd // 11 // --- /// YAL030W // cdna:known chromosome:SGD1:I:87287:87753:1 gene:YAL030W // ensembl // 11 // --- --- No cerevisiae_gene -2.0913612802647 -2.40569313225682 1.10074711254852 -1.59583094958438 1.03339124361857 Max fold change below threshold 4 2.40569313225682 Max fold change at or above threshold 0.7725864325731 -1.181062813663 -0.475752381975083 0.884228763064986 1235.94123840332 480.74733564961 0.388972647494694 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779316_at YCR079W.S1 Hypothetical protein 2.40464851379634 1015.23452758789 1050.75872802734 --- --- 5739 // mitochondrion // inferred from direct assay 4721 // phosphoprotein phosphatase activity // traceable author statement 1008.1171875 895.331726074219 1135.13732910156 1093.40026855469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR079W /GEN=PAT1 /DB_XREF=GI:10383808 /SEG=NC_001135:+252841,254169 /DEF=Hypothetical ORF /NOTE=Ycr079wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: phosphoprotein phosphatase activity [goid GO:0004721] [evidence TAS] [pmid 10572263]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002133 // YCR079W SGDID:S0002133, Chr III from 252841-254169, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022514 // cdna:Genscan chromosome:SGD1:III:252988:254169:1 // ensembl // 11 // --- /// GENEFINDER00000023307 // cdna:GeneFinder chromosome:SGD1:III:252988:254169:1 // ensembl // 11 // --- /// YCR079W // cdna:known chromosome:SGD1:III:252841:254169:1 gene:YCR079W // ensembl // 11 // --- --- No cerevisiae_gene -2.40464851379634 -1.12597058513755 1.2909831281628 1.12599739710475 1.08459639624455 Max fold change below threshold 4 2.40464851379634 Max fold change at or above threshold -0.234907139660895 -1.29980690473933 0.96439388053969 0.570320163860532 1032.99662780762 105.911809847638 0.102528708222814 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772892_at YBL024W.S1 S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase, methylates cytosine to m5C at several positions in tRNAs and intron-containing pre-tRNAs; similar to Nop2p and human proliferation associated nucleolar protein p120 2.40448072491813 446.228210449219 654.123260498047 NCL1 30488 // tRNA methylation // inferred from direct assay 5634 // nucleus // inferred from direct assay 16428 // tRNA (cytosine-5-)-methyltransferase activity // inferred from direct assay 619.951477050781 452.587280273438 439.869140625 688.295043945313 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL024W /GEN=NCL1 /DB_XREF=GI:6319447 /SEG=NC_001134:+172499,174553 /DEF=Nuclear protein 1, similar to NOP2 and human proliferation associated nucleolar protein p120 /NOTE=Ncl1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9767141]; go_function: tRNA (cytosine-5-)-methyltransferase activity [goid GO:0016428] [evidence IDA] [pmid 10445884]; go_process: tRNA methylation [goid GO:0030488] [evidence IDA] [pmid 10445884] --- --- --- --- --- --- S0000120 // NCL1 SGDID:S0000120, Chr II from 172537-174591, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022201 // cdna:GeneFinder chromosome:SGD1:II:172537:174591:1 // ensembl // 11 // --- /// GENSCAN00000021118 // cdna:Genscan chromosome:SGD1:II:172999:174591:1 // ensembl // 11 // --- /// YBL024W // cdna:known chromosome:SGD1:II:172537:174591:1 gene:YBL024W // ensembl // 11 // --- --- No cerevisiae_gene 2.40448072491813 -1.36979430061806 -1.06414585963852 -1.40939979597093 1.11024018721538 Max fold change below threshold 4 2.40448072491813 Max fold change at or above threshold 0.565728704165591 -0.791229000997234 -0.894345306178345 1.11984560300999 550.175735473633 123.337813802576 0.224178941109422 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770154_at YML102W.S1 Component of the chromatin assembly complex (with Rlf2p and Msi1p) that assembles newly synthesized histones onto recently replicated DNA, required for building functional kinetochores, conserved from yeast to humans 2.40384794516843 650.317565917969 1615.19348144531 CAC2 6281 // DNA repair // inferred from mutant phenotype /// 6334 // nucleosome assembly // inferred from mutant phenotype /// 6342 // chromatin silencing // inferred from mutant phenotype 775 // chromosome, pericentric region // inferred from direct assay /// 5678 // chromatin assembly complex // inferred from direct assay 30528 // transcription regulator activity // inferred from mutant phenotype 1562.505859375 650.633178710938 650.001953125 1667.88110351563 0.000244141003349796 0.00292969006113708 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML102W /GEN=CAC2 /DB_XREF=GI:6323534 /SEG=NC_001145:+68294,69700 /DEF=Involved in DNA-replication-linked nucleosome assembly; homologous to the p60 subunit of the Human CAF-I /NOTE=Cac2p; go_component: chromatin assembly complex [goid GO:0005678] [evidence IDA] [pmid 9030687]; go_component: chromosome, pericentric region [goid GO:0000775] [evidence IDA] [pmid 11782447]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 9030687]; go_process: chromatin silencing [goid GO:0006342] [evidence IMP] [pmid 9436982]; go_process: nucleosome assembly [goid GO:0006334] [evidence IMP] [pmid 9030687] --- --- --- --- --- --- S0004570 // CAC2 SGDID:S0004570, Chr XIII from 68294-69700, Verified ORF // sgd // 11 // --- /// GENSCAN00000018632 // cdna:Genscan chromosome:SGD1:XIII:68294:69700:1 // ensembl // 11 // --- /// GENEFINDER00000021802 // cdna:GeneFinder chromosome:SGD1:XIII:68294:69700:1 // ensembl // 11 // --- /// YML102W // cdna:known chromosome:SGD1:XIII:68294:69700:1 gene:YML102W // ensembl // 11 // --- YML101C-A // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene -1.45142375064633 -2.40151580107043 -1.23430871642404 -2.40384794516843 1.06743990335036 Max fold change below threshold 4 2.40384794516843 Max fold change at or above threshold 0.769155622619782 -0.862889639926768 -0.86401939054763 0.957753407854616 1132.75552368164 558.730019068974 0.493248549566115 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771052_at YDL222C.S1 The authentic, non-tagged protein was localized to the mitochondria; cell cortex protein; not required for growth on nonfermentable carbon sources; required for viability in stationary phase 2.40356689339985 5815.18603515625 2788.31103515625 FMP45 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5938 // cell cortex // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity --- 2838.5224609375 6822.57861328125 4807.79345703125 2738.099609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL222C /GEN=HBT1 /DB_XREF=GI:6319979 /SEG=NC_001136:-60873,61802 /DEF=The authentic, non-tagged protein was localized to the mitochondria; cell cortex protein /NOTE=Ydl222cp --- --- --- --- --- S0002381 // span:7-29,112-134,147-169,189-211 // numtm:4 S0002381 // FMP45 SGDID:S0002381, Chr IV from 61802-60873, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023713 // cdna:GeneFinder chromosome:SGD1:IV:60873:61802:-1 // ensembl // 11 // --- /// GENSCAN00000024937 // cdna:Genscan chromosome:SGD1:IV:60873:61457:-1 // ensembl // 10 // --- /// YDL222C // cdna:known chromosome:SGD1:IV:60873:61802:-1 gene:YDL222C // ensembl // 11 // --- --- No cerevisiae_gene -1.13119803341448 2.40356689339985 1.38610261239153 1.69376621928979 -1.03667611332278 Max fold change below threshold 4 2.40356689339985 Max fold change at or above threshold -0.757403223804246 1.30484609417174 0.261941788744118 -0.809384659111612 4301.74853515625 1931.89839735476 0.449096078389107 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776226_at YDR122W.S1 Serine/threonine protein kinase involved in regulation of exocytosis; localizes to the cytoplasmic face of the plasma membrane; closely related to Kin2p 2.40349329716679 526.024719238281 1028.83331298828 KIN1 6887 // exocytosis // inferred from genetic interaction /// 6887 // exocytosis // inferred from physical interaction 5624 // membrane fraction // inferred from direct assay /// 5886 // plasma membrane // inferred from physical interaction 4672 // protein kinase activity // inferred from direct assay /// 4672 // protein kinase activity // inferred from sequence similarity 1037.62182617188 510.395629882813 541.65380859375 1020.04479980469 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR122W /GEN=KIN1 /DB_XREF=GI:6320327 /SEG=NC_001136:+694694,697888 /DEF=Serine/threonine protein kinase /NOTE=Kin1p; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 8020610]; go_function: protein kinase activity [goid GO:0004672] [evidence IDA,ISS] [pmid 8203145]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-66 /// hanks // 2.2.1 // CaMK Group; CaMK II KIN1/SNF1/Nim1; KIN1 // 1.0E-150 --- --- S0002529 // KIN1 SGDID:S0002529, Chr IV from 694695-697889, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023824 // cdna:GeneFinder chromosome:SGD1:IV:694695:697889:1 // ensembl // 11 // --- /// GENSCAN00000025187 // cdna:Genscan chromosome:SGD1:IV:694695:697889:1 // ensembl // 11 // --- /// YDR122W // cdna:known chromosome:SGD1:IV:694695:697889:1 gene:YDR122W // ensembl // 11 // --- --- No cerevisiae_gene -2.40349329716679 -2.03297553000231 -1.30193835725857 -1.91565499902191 -1.01723162195479 Max fold change below threshold 4 2.40349329716679 Max fold change at or above threshold 0.895161996924452 -0.918696174616566 -0.811156178915674 0.834690356607788 777.429016113281 290.665612428309 0.373880581254193 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771801_at YLR356W.S1 Hypothetical protein 2.4031405350423 1325.36999511719 1743.06225585938 --- --- 5739 // mitochondrion // inferred from direct assay --- 1737.17065429688 1117.77758789063 1532.96240234375 1748.95385742188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR356W /GEN=ILV5 /DB_XREF=GI:6323388 /SEG=NC_001144:+840320,840913 /DEF=Hypothetical ORF /NOTE=Ylr356wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004348 // span:13-35,55-72,79-101,172-194 // numtm:4 S0004348 // YLR356W SGDID:S0004348, Chr XII from 840320-840913, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018091 // cdna:Genscan chromosome:SGD1:XII:840320:840913:1 // ensembl // 11 // --- /// GENEFINDER00000024558 // cdna:GeneFinder chromosome:SGD1:XII:840320:840913:1 // ensembl // 11 // --- /// YLR356W // cdna:known chromosome:SGD1:XII:840320:840913:1 gene:YLR356W // ensembl // 11 // --- --- No cerevisiae_gene -2.4031405350423 -1.55412907998551 1.09806244186068 -1.13321152015269 1.00678298536523 Max fold change below threshold 4 2.4031405350423 Max fold change at or above threshold 0.688442465956992 -1.41260200216392 -0.00425275680377871 0.728412293010705 1534.21612548828 294.802454590697 0.192151842033907 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779904_at YHR048W.S1 Hypothetical protein 2.40220486225132 122.607761383057 103.072929382324 --- 15893 // drug transport // inferred from expression pattern /// 15893 // drug transport // inferred from sequence similarity 16021 // integral to membrane // inferred from sequence similarity 15238 // drug transporter activity // inferred from expression pattern /// 15238 // drug transporter activity // inferred from sequence similarity 91.8878707885742 107.792579650879 137.422943115234 114.257987976074 0.00195312988944352 0.00195312988944352 0.00122069998178631 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR048W /GEN=AAP1' /DB_XREF=GI:6321838 /SEG=NC_001140:+204599,206143 /DEF=Hypothetical ORF /NOTE=Yhr048wp; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 12697649]; go_function: drug transporter activity [goid GO:0015238] [evidence IEP,ISS] [pmid 12697649]; go_process: drug transport [goid GO:0015893] [evidence IEP,ISS] [pmid 12697649] --- --- --- --- --- S0001090 // span:74-96,111-133,140-162,166-188,201-223,228-250,306-328,343-365,385-407,412-434,454-471,475-497 // numtm:12 S0001090 // YHR048W SGDID:S0001090, Chr VIII from 204599-206143, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016595 // cdna:Genscan chromosome:SGD1:VIII:204599:206143:1 // ensembl // 11 // --- /// YHR048W // cdna:known chromosome:SGD1:VIII:204599:206143:1 gene:YHR048W // ensembl // 11 // --- GENEFINDER00000020166 // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene 2.40220486225132 1.17308822944543 1.27001425697781 1.49555041308371 1.24345016372152 Max fold change below threshold 4 2.40220486225132 Max fold change at or above threshold -1.10902612929926 -0.267181046611669 1.3011705652706 0.0750366106403341 112.84034538269 18.8926789374702 0.167428404028691 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777630_at YKL216W.S1 Dihydroorotate dehydrogenase, catalyzes the fourth enzymatic step in the de novo biosynthesis of pyrimidines, converting dihydroorotic acid into orotic acid 2.40199747598113 1191.84030151367 979.684600830078 URA1 6207 // 'de novo' pyrimidine base biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 4152 // dihydroorotate dehydrogenase activity // inferred from direct assay 909.668518066406 1011.15997314453 1372.52062988281 1049.70068359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL216W /GEN=URA1 /DB_XREF=GI:6322633 /SEG=NC_001143:+25216,26160 /DEF=The enzyme catalyzes the conversion of dihydroorotic acid to orotic acid /NOTE=Ura1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 1409592]; go_function: dihydroorotate dehydrogenase activity [goid GO:0004152] [evidence IDA] [pmid 1511880]; go_process: pyrimidine base biosynthesis [goid GO:0019856] [evidence TAS] [pmid 2679804] --- --- --- --- --- --- S0001699 // URA1 SGDID:S0001699, Chr XI from 25216-26160, Verified ORF // sgd // 11 // --- /// GENSCAN00000018256 // cdna:Genscan chromosome:SGD1:XI:25216:26160:1 // ensembl // 11 // --- /// GENEFINDER00000023173 // cdna:GeneFinder chromosome:SGD1:XI:25216:26160:1 // ensembl // 11 // --- /// YKL216W // cdna:known chromosome:SGD1:XI:25216:26160:1 gene:YKL216W // ensembl // 11 // --- --- No cerevisiae_gene 2.40199747598113 1.11156971255184 1.16460826077064 1.50881403788739 1.15393757478273 Max fold change below threshold 4 2.40199747598113 Max fold change at or above threshold -0.880083587343545 -0.372848827493102 1.43316218889193 -0.180229774055287 1085.76245117188 200.087736708047 0.184283161102219 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776754_at YOR140W.S1 Transcription repressor involved in regulation of flocculation-related genes, inhibits transcription by recruiting general corepressor Cyc8p-Tup1p to different promoters; negatively regulated by cAMP-dependent protein kinase A subunit Tpk2p 2.40107868456522 187.147232055664 284.602874755859 SFL1 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from physical interaction 228 // nuclear chromosome // inferred from physical interaction 16566 // specific transcriptional repressor activity // inferred from direct assay 281.651611328125 173.720932006836 200.573532104492 287.554138183594 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR140W /GEN=SFL1 /DB_XREF=GI:6324713 /SEG=NC_001147:+586981,589281 /DEF=Transcription factor with domains homologous to myc oncoprotein and yeast Hsf1p required for normal cell surface assembly and flocculence /NOTE=Sfl1p; go_component: nuclear chromosome [goid GO:0000228] [evidence IPI] [pmid 11399075]; go_function: specific transcriptional repressor activity [goid GO:0016566] [evidence IDA] [pmid 11399075]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IMP,IPI] [pmid 11399075] --- --- --- --- --- --- S0005666 // SFL1 SGDID:S0005666, Chr XV from 586981-589281, Verified ORF // sgd // 11 // --- /// GENSCAN00000017565 // cdna:Genscan chromosome:SGD1:XV:586981:589281:1 // ensembl // 11 // --- /// GENEFINDER00000022696 // cdna:GeneFinder chromosome:SGD1:XV:586981:589281:1 // ensembl // 11 // --- /// YOR140W // cdna:known chromosome:SGD1:XV:586981:589281:1 gene:YOR140W // ensembl // 11 // --- --- No cerevisiae_gene -2.40107868456522 -1.62128770594578 -1.17363963834621 -1.40423119826894 1.02095683680855 Max fold change below threshold 4 2.40107868456522 Max fold change at or above threshold 0.797853295072712 -1.08330273858918 -0.615280754377946 0.900730197894413 235.875053405762 57.3746554724593 0.243241727533438 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770576_at YPL036W.S1 Plasma membrane H+-ATPase, isoform of Pma1p, involved in pumping protons out of the cell; regulator of cytoplasmic pH and plasma membrane potential 2.40040644156291 2165.78405761719 2797.8125 PMA2 6885 // regulation of pH // inferred from expression pattern /// 15992 // proton transport // inferred from direct assay 5886 // plasma membrane // inferred from direct assay 8553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // inferred from direct assay 2887.20458984375 1686.55444335938 2645.013671875 2708.42041015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL036W /GEN=PMA2 /DB_XREF=GI:6325221 /SEG=NC_001148:+482839,485682 /DEF=plasma membrane ATPase /NOTE=Pma2p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 8396147]; go_function: hydrogen-exporting ATPase activity, phosphorylative mechanism [goid GO:0008553] [evidence IDA] [pmid 8396147]; go_process: proton transport [goid GO:0015992] [evidence IDA] [pmid 8396147]; go_process: regulation of pH [goid GO:0006885] [evidence IEP] [pmid 8929277] --- --- --- ec // A1A3_HUMAN // (P13637) Sodium/potassium-transporting ATPase alpha-3 chain (EC 3.6.3.9) (Sodium pump 3) (Na+/K+ ATPase 3) (Alpha(III)) // 0.0 --- S0005957 // span:141-163,167-189,318-340,360-382,720-742,748-767,780-802,817-839,852-874,884-906 // numtm:10 S0005957 // PMA2 SGDID:S0005957, Chr XVI from 482841-485684, Verified ORF // sgd // 11 // --- /// GENSCAN00000017161 // cdna:Genscan chromosome:SGD1:XVI:482841:485684:1 // ensembl // 11 // --- /// GENEFINDER00000021001 // cdna:GeneFinder chromosome:SGD1:XVI:482841:485684:1 // ensembl // 11 // --- /// YPL036W // cdna:known chromosome:SGD1:XVI:482841:485684:1 gene:YPL036W // ensembl // 11 // --- --- No cerevisiae_gene -2.40040644156291 -1.71189527928482 1.57327665590788 -1.09156509115398 -1.06601049785959 Max fold change below threshold 4 2.40040644156291 Max fold change at or above threshold 0.750767923191256 -1.47270416498051 0.302256966282609 0.419679275506645 2481.79827880859 539.988854760755 0.217579671712876 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776806_at SPAC607.04.S1 --- 2.40030655492206 --- --- --- --- 3.12689518928528 1.30270659923553 1.55272543430328 5.69475507736206 0.466064006090164 0.432372987270355 0.303710997104645 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC607.04 /DEF=inositol polyphosphate kinase (predicted) --- --- --- --- --- --- SPAC607.04 // |||inositol polyphosphate kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 9 // --- --- No No 1.69948111149938 -2.40030655492206 2.22216918770805 -2.01381076151968 1.82121712837574 Max fold change below threshold 2 2.40030655492206 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1770017_at YGL006W.S1 Vacuolar Ca2+ ATPase involved in depleting cytosol of Ca2+ ions; prevents growth inhibition by activation of calcineurin in the presence of elevated concentrations of calcium 2.39977578512394 4102.21594238281 1933.7255859375 PMC1 6816 // calcium ion transport // inferred from sequence similarity /// 6816 // calcium ion transport // inferred from mutant phenotype /// 6874 // calcium ion homeostasis // inferred from mutant phenotype 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay 5388 // calcium-transporting ATPase activity // inferred from sequence similarity /// 5388 // calcium-transporting ATPase activity // inferred from mutant phenotype 1920.32934570313 4608.35986328125 3596.07202148438 1947.12182617188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL006W /GEN=PMC1 /DB_XREF=GI:6321432 /SEG=NC_001139:+485923,489444 /DEF=May be involved in depleting cytosol of Ca2+ ions /NOTE=Pmc1p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 7507493]; go_function: calcium-transporting ATPase activity [goid GO:0005388] [evidence IMP,ISS] [pmid 7507493]; go_process: calcium ion homeostasis [goid GO:0006874] [evidence IMP] [pmid 7507493]; go_process: calcium ion transport [goid GO:0006816] [evidence IMP,ISS] [pmid 7507493] --- --- --- ec // A1A2_HUMAN // (P50993) Sodium/potassium-transporting ATPase alpha-2 chain precursor (EC 3.6.3.9) (Sodium pump 2) (Na+/K+ ATPase 2) // 0.0 --- S0002974 // span:119-137,152-174,344-366,394-416,899-921,926-948,969-991,1066-1088,1100-1119 // numtm:9 S0002974 // PMC1 SGDID:S0002974, Chr VII from 485925-489446, Verified ORF // sgd // 11 // --- /// GENSCAN00000019336 // cdna:Genscan chromosome:SGD1:VII:485925:489446:1 // ensembl // 11 // --- /// GENEFINDER00000021564 // cdna:GeneFinder chromosome:SGD1:VII:487182:489446:1 // ensembl // 11 // --- /// YGL006W // cdna:known chromosome:SGD1:VII:485925:489446:1 gene:YGL006W // ensembl // 11 // --- --- No cerevisiae_gene -1.38087777734279 2.39977578512394 -1.11711504049357 1.87263295722207 1.01395202366131 Max fold change below threshold 4 2.39977578512394 Max fold change at or above threshold -0.832512821847845 1.2062403025995 0.438464421035888 -0.812191901787543 3017.97076416016 1318.46788379872 0.436872318133813 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777760_at YDR332W.S1 Hypothetical protein 2.39936515322012 148.963790893555 312.069000244141 --- --- 5739 // mitochondrion // inferred from direct assay 4386 // helicase activity // inferred from sequence similarity 291.923889160156 163.788665771484 134.138916015625 332.214111328125 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR332W /GEN=GPI8 /DB_XREF=GI:6320539 /SEG=NC_001136:+1130992,1133061 /DEF=Hypothetical ORF /NOTE=Ydr332wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: helicase activity [goid GO:0004386] [evidence ISS] [pmid 10077188]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.3.1.Di-heme cytochrome c peroxidase // All alpha proteins; Cytochrome c; Cytochrome c; Di-heme cytochrome c peroxidase // 0.00899999961256981 --- S0002740 // YDR332W SGDID:S0002740, Chr IV from 1130994-1133063, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023836 // cdna:GeneFinder chromosome:SGD1:IV:1130994:1133063:1 // ensembl // 11 // --- /// GENSCAN00000025361 // cdna:Genscan chromosome:SGD1:IV:1131351:1133063:1 // ensembl // 11 // --- /// YDR332W // cdna:known chromosome:SGD1:IV:1130994:1133063:1 gene:YDR332W // ensembl // 11 // --- --- No cerevisiae_gene -2.39936515322012 -1.78232045413597 1.11161745399896 -2.17628036539487 1.13801618731472 Max fold change below threshold 4 2.39936515322012 Max fold change at or above threshold 0.637285746364585 -0.692499051828192 -1.00020356470804 1.05541687017165 230.516395568848 96.3578644926698 0.418008724519948 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772461_at SPAPB17E12.11.S1 --- 2.39906029693445 --- --- --- --- 12.1739473342896 15.2666320800781 29.206033706665 10.7802152633667 0.0805663987994194 0.00292969006113708 0.00585938012227416 0.0561522990465164 A P P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB17E12.11 /DEF=N-oligosaccharyltransferase (gamma subunit) (predicted) --- --- --- --- --- --- SPAPB17E12.11 // |||N-oligosaccharyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.64919963430384 1.25404124569174 1.0635978337853 2.39906029693445 -1.12928610764008 Max fold change below threshold 4 2.39906029693445 Max fold change at or above threshold APPPPM No 3 0 APPM 1 2 1 No No 1 < x = 2
1779733_at SPBC947.15c.S1 --- 2.39871359335487 --- --- --- --- 14.7735967636108 7.27820205688477 12.496223449707 6.15896654129028 0.018554700538516 0.219482004642487 0.0375977009534836 0.0676269978284836 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC947.15c /DEF=NADH dehydrogenase (predicted) --- --- --- --- --- --- SPBC947.15c // |||NADH dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.48440517052956 -2.02984152516566 -1.61102596154646 -1.1822449256825 -2.39871359335487 Max fold change below threshold 4 2.39871359335487 Max fold change at or above threshold PAAPPA No 4 0 PAPA 2 2 0 No No 1 < x = 2
1779665_at YPL174C.S1 Large subunit of the dynactin complex, which is involved in partitioning the mitotic spindle between mother and daughter cells; putative ortholog of mammalian p150(glued) 2.39870129817861 58.1701698303223 123.849437713623 NIP100 132 // establishment of mitotic spindle orientation // inferred from mutant phenotype 5816 // spindle pole body // inferred from direct assay /// 5869 // dynactin complex // inferred from direct assay 5515 // protein binding // inferred from sequence similarity /// 8017 // microtubule binding // inferred from sequence similarity 113.67601776123 50.1015090942383 66.2388305664063 134.022857666016 0.000244141003349796 0.000732421991415322 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL174C /GEN=NIP100 /DB_XREF=GI:6325083 /SEG=NC_001148:-220166,222772 /DEF=Nuclear import protein /NOTE=Nip100p; go_component: dynactin complex [goid GO:0005869] [evidence IDA] [pmid 9658168]; go_function: microtubule binding [goid GO:0008017] [evidence ISS] [pmid 9658168]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 9658168]; go_process: mitotic anaphase B [goid GO:0000092] [evidence IGI,IMP] [pmid 9658168] --- --- --- --- --- --- S0006095 // NIP100 SGDID:S0006095, Chr XVI from 222772-220166, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017054 // cdna:Genscan chromosome:SGD1:XVI:220166:222772:-1 // ensembl // 11 // --- /// GENEFINDER00000020805 // cdna:GeneFinder chromosome:SGD1:XVI:220166:222772:-1 // ensembl // 11 // --- /// YPL174C // cdna:known chromosome:SGD1:XVI:220166:222772:-1 gene:YPL174C // ensembl // 11 // --- --- No cerevisiae_gene -2.39870129817861 -2.26891404702824 1.44906553086184 -1.71615375436417 1.17898973156785 Max fold change below threshold 4 2.39870129817861 Max fold change at or above threshold 0.575662387516633 -1.0389633925886 -0.629117751353843 1.09241875642581 91.0098037719727 39.3741444304504 0.432636296295104 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-YER022wM_at AFFX-YER022wM subunit of RNA polymerase II holoenzyme/mediator complex 2.39828703361664 71.699146270752 79.8788108825684 SRB4 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from direct assay 65.8839874267578 56.3386917114258 87.0596008300781 93.8736343383789 9.92052218151684E-9 3.13959738207359E-8 7.49486783746534E-9 9.89339943302525E-10 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /GEN=SRB4 /DB_XREF=gb:L12026.1 /DB_XREF=spd:YER022W /NOTE=SIF corresponding to nucleotides 1215-1484 of gb:L12026.1 /DEF=Saccharomyces cerevisiae supressor protein (SRB4) gene, complete cds. --- --- --- --- --- --- S0000824 // SRB4 SGDID:S0000824, Chr V from 198811-200874, Verified ORF // sgd // 50 // --- /// GENSCAN00000016824 // cdna:Genscan chromosome:SGD1:V:198811:200874:1 // ensembl // 50 // --- /// GENEFINDER00000019772 // cdna:GeneFinder chromosome:SGD1:V:198811:200874:1 // ensembl // 50 // --- /// YER022W // cdna:known chromosome:SGD1:V:198811:200874:1 gene:YER022W // ensembl // 50 // --- --- AFFX_control cerevisiae_gene 1.65336135086305 -1.1694270034566 2.39828703361664 1.32140758673511 1.42483231517729 Max fold change below threshold 4 2.39828703361664 Max fold change at or above threshold -0.562413255837606 -1.1044027195279 0.639954873349187 1.02686110201631 75.7889785766602 17.6115890710129 0.232376651615628 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 No No 3 < x
1770835_at YJR083C.S1 Protein of unknown function, computational analysis of large-scale protein-protein interaction data suggests a possible role in actin cytoskeleton organization; potential Cdc28p substrate 2.39769070512918 200.853248596191 428.22248840332 ACF4 30036 // actin cytoskeleton organization and biogenesis // RCA --- --- 418.993194580078 174.748641967773 226.957855224609 437.451782226563 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR083C /GEN=ACF4 /DB_XREF=GI:6322542 /SEG=NC_001142:-582522,583451 /DEF=Protein of unknown function, computational analysis of large-scale protein-protein interaction data suggests a possible role in actin cytoskeleton organization; potential Cdc28p substrate /NOTE=Acf4p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0003843 // ACF4 SGDID:S0003843, Chr X from 583451-582522, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024198 // cdna:Genscan chromosome:SGD1:X:582522:583451:-1 // ensembl // 11 // --- /// YJR083C // cdna:known chromosome:SGD1:X:582522:583451:-1 gene:YJR083C // ensembl // 11 // --- --- No cerevisiae_gene -1.20979680679397 -2.39769070512918 1.07775874100636 -1.84612774986537 1.04405462400167 Max fold change below threshold 4 2.39769070512918 Max fold change at or above threshold 0.784174748364779 -1.04943601875821 -0.657487152153554 0.922748422546989 314.537868499756 133.204143971915 0.423491596122451 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771051_at YDR234W.S1 Homoaconitase, catalyzes the conversion of homocitrate to homoisocitrate, which is a step in the lysine biosynthesis pathway 2.39748610459874 560.947814941406 612.8818359375 LYS4 19878 // lysine biosynthesis, aminoadipic pathway // non-traceable author statement 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay /// 5777 // peroxisome // inferred from direct assay 4409 // homoaconitate hydratase activity // traceable author statement 586.933044433594 536.609680175781 585.285949707031 638.830627441406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR234W /GEN=LYS4 /DB_XREF=GI:6320440 /SEG=NC_001136:+931121,933202 /DEF=homoaconitase /NOTE=Lys4p; go_component: mitochondrion [goid GO:0005739] [evidence TAS]; go_component: peroxisome [goid GO:0005777] [evidence IDA] [pmid 10077615]; go_function: homoaconitate hydratase activity [goid GO:0004409] [evidence TAS]; go_process: lysine biosynthesis, aminoadipic pathway [goid GO:0019878] [evidence NAS] [pmid 11752249] --- --- --- --- --- --- S0002642 // LYS4 SGDID:S0002642, Chr IV from 931123-933204, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023865 // cdna:GeneFinder chromosome:SGD1:IV:931123:933204:1 // ensembl // 10 // --- /// GENSCAN00000025280 // cdna:Genscan chromosome:SGD1:IV:931123:933204:1 // ensembl // 10 // --- /// YDR234W // cdna:known chromosome:SGD1:IV:931123:933204:1 gene:YDR234W // ensembl // 10 // --- --- No cerevisiae_gene 2.39748610459874 -1.09378020210393 1.12458186928439 -1.00281417096615 1.08842164110541 Max fold change below threshold 4 2.39748610459874 Max fold change at or above threshold 0.000436411293921794 -1.20499152510786 -0.0390175088996244 1.24357262271356 586.914825439453 41.7473021307507 0.0711300862088334 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779206_at SPAC27D7.13c.S1 --- 2.39707776697131 --- --- --- --- 0.83182030916214 1.14374577999115 0.864118695259094 1.94976699352264 0.5927734375 0.828612983226776 0.805419981479645 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27D7.13c /GEN=ssm4 /DEF=dynactin complex (predicted) --- --- --- --- --- --- SPAC27D7.13c // |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.39707776697131 1.3749914102761 -1.34130329205676 1.03882856157899 2.34397618337375 Max fold change below threshold 0 2.39707776697131 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776567_at SPAPB17E12.07c.S1 --- 2.39706838741424 --- --- --- --- 6.46689891815186 7.55615901947021 8.12662601470947 5.5106635093689 0.030273400247097 0.129638999700546 0.0805663987994194 0.0952147990465164 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB17E12.07c /DEF=tRNA-splicing endonuclease (subunit) (predicted) --- --- --- --- --- --- SPAPB17E12.07c // |||tRNA-splicing endonuclease |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.52786078400867 1.16843623429167 -2.39706838741424 1.25664961174806 -1.17352455056587 Max fold change below threshold 4 2.39706838741424 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1774171_at YLR459W.S1 GPI transamidase subunit, involved in attachment of glycosylphosphatidylinositol (GPI) anchors to proteins; may have a role in recognition of the attachment signal or of the lipid portion of GPI 2.39577438994494 264.029937744141 591.858215332031 GAB1 16255 // attachment of GPI anchor to protein // inferred from sequence similarity 42765 // GPI-anchor transamidase complex // inferred from physical interaction /// 42765 // GPI-anchor transamidase complex // inferred from mutant phenotype 3923 // GPI-anchor transamidase activity // inferred from sequence similarity 608.414978027344 253.953369140625 274.106506347656 575.301452636719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR459W /GEN=CDC91 /DB_XREF=GI:6323492 /SEG=NC_001144:+1057331,1058515 /DEF=GPI transamidase subunit, involved in attachment of glycosylphosphatidylinositol (GPI) anchors to proteins; may have a role in recognition of the attachment signal or of the lipid portion of GPI /NOTE=Cdc91p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: GPI-anchor transamidase activity [goid GO:0003923] [evidence ISS] [pmid 12802054]; go_process: attachment of GPI anchor to protein [goid GO:0016255] [evidence ISS] [pmid 12802054] --- --- --- --- --- S0004451 // span:136-158,162-184,191-213,223-245,252-274,301-318,325-344,354-376 // numtm:8 S0004451 // CDC91 SGDID:S0004451, Chr XII from 1057331-1058515, Verified ORF // sgd // 11 // --- /// YLR459W // cdna:known chromosome:SGD1:XII:1057331:1058515:1 gene:YLR459W // ensembl // 11 // --- --- No cerevisiae_gene -1.72864437421151 -2.39577438994494 -1.10399571792436 -2.21962982978476 -1.05755856384311 Max fold change below threshold 4 2.39577438994494 Max fold change at or above threshold 0.950185981928079 -0.916067519974449 -0.809960506001706 0.775842044048076 427.944076538086 189.932186878882 0.443824782937446 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775583_at SPAC4A8.12c.S1 --- 2.39561644282859 --- --- --- --- 4.08942222595215 5.83715343475342 9.79668712615967 3.05041790008545 0.39013671875 0.26708984375 0.0676269978284836 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4A8.12c /GEN=sds22 /DEF=protein phosphatases regulatory subunit (PMID 1846086) --- --- --- --- --- --- SPAC4A8.12c // |sds22||protein phosphatase regulatory subunit |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.97666326203348 1.42737851760815 1.15456557378961 2.39561644282859 -1.34061048679186 Max fold change below threshold 4 2.39561644282859 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773363_x_at YLL066W-B.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 2.39438360645903 101.261631011963 46.0997543334961 --- --- --- --- 43.7496643066406 104.753479003906 97.7697830200195 48.4498443603516 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL066W-B /DB_XREF=GI:33438827 /SEG=NC_001144:+5605,5775 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Yll066w-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028672 // YLL066W-B SGDID:S0028672, Chr XII from 5605-5775, Uncharacterized ORF // sgd // 11 // --- /// YLL066W-B // cdna:known chromosome:SGD1:XII:5605:5775:1 gene:YLL066W-B // ensembl // 11 // --- S0028686 // sgd // 3 // Cross Hyb Matching Probes /// YBL109W // ensembl // 3 // Cross Hyb Matching Probes /// YDR544C // ensembl // 6 // Cross Hyb Matching Probes /// YHR217C // ensembl // 6 // Cross Hyb Matching Probes /// YLR466C-B // ensembl // 3 // Cross Hyb Matching Probes /// YNL338W // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene -1.87053650793754 2.39438360645903 1.02023976188433 2.23475504485595 1.10743351127834 Max fold change below threshold 4 2.39438360645903 Max fold change at or above threshold -0.934392404906107 0.97003601720604 0.752017698366375 -0.787661310666308 73.6806926727295 32.0326109340503 0.434749047166682 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770043_at YHR170W.S1 Protein involved in nuclear export of the large ribosomal subunit; acts as a Crm1p-dependent adapter protein for export of nascent ribosomal subunits through the nuclear pore complex 2.3926936318046 341.396240234375 544.777923583984 NMD3 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 55 // ribosomal large subunit-nucleus export // inferred from mutant phenotype 5829 // cytosol // inferred from direct assay /// 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // inferred from direct assay 3723 // RNA binding // inferred from sequence similarity /// 5515 // protein binding // inferred from sequence similarity 521.123413085938 328.354858398438 354.437622070313 568.432434082031 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR170W /GEN=NMD3 /DB_XREF=GI:6321964 /SEG=NC_001140:+443827,445383 /DEF=putative Upf1p-interacting protein /NOTE=Nmd3p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 10022925]; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence IDA] [pmid 10022925]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 10022925]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 10022925]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 10022925] --- --- --- --- --- --- S0001213 // NMD3 SGDID:S0001213, Chr VIII from 443828-445384, Verified ORF // sgd // 11 // --- /// GENSCAN00000016696 // cdna:Genscan chromosome:SGD1:VIII:443828:445384:1 // ensembl // 11 // --- /// GENEFINDER00000020123 // cdna:GeneFinder chromosome:SGD1:VIII:443828:445384:1 // ensembl // 11 // --- /// YHR170W // cdna:known chromosome:SGD1:VIII:443828:445384:1 gene:YHR170W // ensembl // 11 // --- --- No cerevisiae_gene 2.3926936318046 -1.58707386157688 1.2456192172344 -1.47028244361305 1.09078275857142 Max fold change below threshold 4 2.3926936318046 Max fold change at or above threshold 0.653156452527392 -0.960297478992395 -0.741987300449478 1.04912832691448 443.08708190918 119.475710413326 0.269643858490586 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775573_at YDL073W.S1 Hypothetical protein 2.39225873684561 245.203269958496 600.08984375 --- --- --- --- 575.298583984375 240.483428955078 249.923110961914 624.881103515625 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL073W /GEN=BRE1 /DB_XREF=GI:6320130 /SEG=NC_001136:+326613,329567 /DEF=Hypothetical ORF /NOTE=Ydl073wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002231 // YDL073W SGDID:S0002231, Chr IV from 326613-329567, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023732 // cdna:GeneFinder chromosome:SGD1:IV:326613:329567:1 // ensembl // 11 // --- /// GENSCAN00000025047 // cdna:Genscan chromosome:SGD1:IV:328650:329567:1 // ensembl // 11 // --- /// YDL073W // cdna:known chromosome:SGD1:IV:326613:329567:1 gene:YDL073W // ensembl // 11 // --- --- No cerevisiae_gene 1.11951918225208 -2.39225873684561 -1.64822573001859 -2.30190230015201 1.08618571453428 Max fold change below threshold 4 2.39225873684561 Max fold change at or above threshold 0.741290610913428 -0.884598907102403 -0.838759046517316 0.98206734270629 422.646556854248 205.927371644472 0.487233051600339 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777298_at YIL152W.S1 Hypothetical protein 2.39217185932858 262.932609558105 609.615264892578 --- --- --- --- 565.737365722656 236.49528503418 289.369934082031 653.4931640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL152W /GEN=RRD1 /DB_XREF=GI:6322039 /SEG=NC_001141:+56545,57252 /DEF=Hypothetical ORF /NOTE=Yil152wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001414 // YIL152W SGDID:S0001414, Chr IX from 56545-57252, Uncharacterized ORF // sgd // 11 // --- /// YIL152W // cdna:known chromosome:SGD1:IX:56545:57252:1 gene:YIL152W // ensembl // 11 // --- --- No cerevisiae_gene -1.48796756633538 -2.39217185932858 1.24467180585349 -1.95506615957648 1.155117557469 Max fold change below threshold 4 2.39217185932858 Max fold change at or above threshold 0.633132253620389 -0.977004160597045 -0.718424219530925 1.06229612650758 436.273937225342 204.48086123715 0.46869831954122 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771763_at YER163C.S1 Hypothetical protein 2.39207319276444 1035.76116943359 538.940155029297 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 503.366333007813 867.433227539063 1204.08911132813 574.513977050781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER163C /GEN=RAD4 /DB_XREF=GI:6321011 /SEG=NC_001137:-503079,503777 /DEF=Hypothetical ORF /NOTE=Yer163cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000965 // YER163C SGDID:S0000965, Chr V from 503777-503079, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016942 // cdna:Genscan chromosome:SGD1:V:503079:503777:-1 // ensembl // 11 // --- /// GENEFINDER00000019570 // cdna:GeneFinder chromosome:SGD1:V:503079:503777:-1 // ensembl // 11 // --- /// YER163C // cdna:known chromosome:SGD1:V:503079:503777:-1 gene:YER163C // ensembl // 11 // --- --- No cerevisiae_gene 1.00735459771941 1.72326429214248 1.55543948857994 2.39207319276444 1.14134366837336 Max fold change below threshold 4 2.39207319276444 Max fold change at or above threshold -0.8891448160765 0.250735658534534 1.30479323520094 -0.666384077658976 787.350662231445 319.390412100428 0.405652052409835 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778625_at SPAC15A10.06.S1 --- 2.3920359175574 --- --- --- --- 3.1921055316925 7.63563108444214 5.44769382476807 3.57617664337158 0.5 0.398925989866257 0.334473013877869 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15A10.06 /DEF=CPA1 sodium ionproton antiporter --- --- --- --- --- --- SPAC15A10.06 // |||CPA1 sodium ion/proton antiporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.31289879979831 2.3920359175574 -1.12563143393388 1.70661457482567 1.12031905206951 Max fold change below threshold 4 2.3920359175574 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771586_at SPAPB17E12.05.S1 --- 2.39188489480249 --- --- --- --- 3.19788765907288 3.37871432304382 6.0268611907959 2.12333607673645 0.601073980331421 0.533936023712158 0.5 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB17E12.05 /GEN=rpl3703 /DEF=60S ribosomal protein L37 --- --- --- --- --- --- AB009637 // Schizosaccharomyces pombe mRNA for ribosomal protein L37, complete cds. // gb // 11 // --- /// SPAPB17E12.05 // |rpl3703|rpl37|60S ribosomal protein L37|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- U97370 // gb // 4 // Cross Hyb Matching Probes No No 2.03891891343812 1.05654565864999 2.39188489480249 1.88463818411407 -1.50606759528525 Max fold change below threshold 3 2.39188489480249 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775941_at SPAC25H1.06.S1 --- 2.39173726752213 --- --- --- --- 2.31503558158875 1.50700080394745 3.95199871063232 2.45864415168762 0.850341975688934 0.828612983226776 0.633789002895355 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25H1.06 /DEF=WD repeat protein --- --- --- --- --- --- SPAC25H1.06 // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.39173726752213 -1.53618735671854 1.64389339073692 1.70710063467801 1.06203298611951 Max fold change below threshold 1 2.39173726752213 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771575_at YGR089W.S1 Protein that exhibits physical and genetic interactions with Rpb8p, which is a subunit of RNA polymerases I, II, and III; computational analysis of large-scale protein-protein interaction data suggests a role in chromosome segregation 2.39133735993119 123.857723236084 353.972305297852 NNF2 7059 // chromosome segregation // RCA 5624 // membrane fraction // inferred from direct assay --- 296.00927734375 123.783988952637 123.931457519531 411.935333251953 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR089W /GEN=NNF2 /DB_XREF=GI:6321526 /SEG=NC_001139:+656962,659772 /DEF=Protein that exhibits physical and genetic interactions with Rpb8p, which is a subunit of RNA polymerases I, II, and III; computational analysis of large-scale protein-protein interaction data suggests a role in chromosome segregation /NOTE=Nnf2p; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 11486042]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromosome segregation [goid GO:0007059] [evidence TAS] [pmid 14566057] --- --- --- --- --- S0003321 // span:39-61,121-143,247-264 // numtm:3 S0003321 // NNF2 SGDID:S0003321, Chr VII from 656964-659774, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000019408 // cdna:Genscan chromosome:SGD1:VII:657675:659774:1 // ensembl // 10 // --- /// GENEFINDER00000021632 // cdna:GeneFinder chromosome:SGD1:VII:657675:659774:1 // ensembl // 10 // --- /// YGR089W // cdna:known chromosome:SGD1:VII:656964:659774:1 gene:YGR089W // ensembl // 10 // --- --- No cerevisiae_gene 1.24542415629789 -2.39133735993119 -1.08017592613009 -2.38849185887368 1.39162980616172 Max fold change below threshold 4 2.39133735993119 Max fold change at or above threshold 0.404824912707762 -0.816332583365677 -0.815286962553654 1.22679463321157 238.915014266968 141.034460292709 0.59031225277083 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769895_at YIL128W.S1 DNA repair and TFIIH regulator, required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription; possible role in assembly of a multiprotein complex(es) required for NER and RNAP II transcription 2.39077721937382 393.861053466797 983.352355957031 MET18 6289 // nucleotide-excision repair // inferred from mutant phenotype /// 6366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 6366 // transcription from RNA polymerase II promoter // inferred from genetic interaction /// 6555 // methionine metabolism // inferred from mutant phenotype 5654 // nucleoplasm // inferred from mutant phenotype 3702 // RNA polymerase II transcription factor activity // inferred from mutant phenotype /// 3702 // RNA polymerase II transcription factor activity // inferred from genetic interaction 901.535400390625 410.633270263672 377.088836669922 1065.16931152344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL128W /GEN=MET18 /DB_XREF=GI:6322063 /SEG=NC_001141:+113806,116904 /DEF=DNA repair and TFIIH regulator, required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription; possible role in assembly of a multiprotein complex(es) required for NER and RNAP II transcription /NOTE=Met18p; go_component: nucleoplasm [goid GO:0005654] [evidence IMP] [pmid 8943333]; go_function: RNA polymerase II transcription factor activity [goid GO:0003702] [evidence IGI,IMP] [pmid 8943333]; go_process: methionine metabolism [goid GO:0006555] [evidence IMP] [pmid 8943333]; go_process: nucleotide-excision repair [goid GO:0006289] [evidence IMP] [pmid 8943333]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IGI,IMP] [pmid 8943333] --- --- --- --- --- --- S0001390 // MET18 SGDID:S0001390, Chr IX from 113806-116904, Verified ORF // sgd // 11 // --- /// GENSCAN00000016379 // cdna:Genscan chromosome:SGD1:IX:113806:116904:1 // ensembl // 11 // --- /// GENEFINDER00000019040 // cdna:GeneFinder chromosome:SGD1:IX:113806:116904:1 // ensembl // 11 // --- /// YIL128W // cdna:known chromosome:SGD1:IX:113806:116904:1 gene:YIL128W // ensembl // 11 // --- --- No cerevisiae_gene -1.0088890391558 -2.19547578259243 -1.09291806841465 -2.39077721937382 1.1815058078273 Max fold change below threshold 4 2.39077721937382 Max fold change at or above threshold 0.613437502302983 -0.800828318564488 -0.897468245345271 1.08485906160678 688.606704711914 347.107398682553 0.504072057834187 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773219_at YGL164C.S1 Competes with yeast RanBP1 (Yrb1p) for binding to the GTP-bound form of yeast Ran (Gsp1p); able to form trimeric complexes with RanGTP and some of the karyopherins; inhibits RanGAP1(Rna1p)-mediated GTP hydrolysis on Ran. 2.38988725514096 402.271743774414 760.694885253906 YRB30 --- 5634 // nucleus // inferred from mutant phenotype /// 5634 // nucleus // inferred from sequence similarity /// 5737 // cytoplasm // inferred from direct assay 5515 // protein binding // inferred from direct assay /// 30234 // enzyme regulator activity // inferred from mutant phenotype /// 30234 // enzyme regulator activity // inferred from sequence similarity 715.033874511719 299.191467285156 505.352020263672 806.355895996094 0.000732421991415322 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL164C /GEN=YRB30 /DB_XREF=GI:6321274 /SEG=NC_001139:-191982,193304 /DEF=Competes with yeast RanBP1 (Yrb1p) for binding to the GTP-bound form of yeast Ran (Gsp1p); able to form trimeric complexes with RanGTP and some of the karyopherins; inhibits RanGAP1(Rna1p)-mediated GTP hydrolysis on Ran. /NOTE=Yrb30p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12578832]; go_component: nucleus [goid GO:0005634] [evidence IMP,ISS] [pmid 12578832]; go_function: enzyme regulator activity [goid GO:0030234] [evidence IMP,ISS] [pmid 12578832]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 12578832]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003132 // YRB30 SGDID:S0003132, Chr VII from 193306-191984, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021439 // cdna:GeneFinder chromosome:SGD1:VII:191984:193000:-1 // ensembl // 11 // --- /// YGL164C // cdna:known chromosome:SGD1:VII:191984:193306:-1 gene:YGL164C // ensembl // 11 // --- --- No cerevisiae_gene -1.6799058631007 -2.38988725514096 1.2779550179405 -1.41492236270995 1.12771705612792 Max fold change below threshold 4 2.38988725514096 Max fold change at or above threshold 0.589662941742317 -1.2463971777428 -0.336140881230401 0.992875117230881 581.48331451416 226.48626960166 0.389497452374698 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771319_at YPR093C.S1 Protein involved in a putative alcohol-responsive signaling pathway; accumulates in the nucleus under alcohol stress; contains a Ring/PHD finger domain 2.38823693663559 591.52864074707 352.535858154297 ASR1 45471 // response to ethanol // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 314.762878417969 431.328948974609 751.728332519531 390.308837890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR093C /GEN=SRP54 /DB_XREF=GI:37362706 /SEG=NC_001148:-719554,720420 /DEF=Hypothetical ORF /NOTE=Ypr093cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006297 // YPR093C SGDID:S0006297, Chr XVI from 720422-719556, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017254 // cdna:Genscan chromosome:SGD1:XVI:719556:720218:-1 // ensembl // 11 // --- /// GENEFINDER00000020791 // cdna:GeneFinder chromosome:SGD1:XVI:719556:720422:-1 // ensembl // 11 // --- /// YPR093C // cdna:known chromosome:SGD1:XVI:719556:720422:-1 gene:YPR093C // ensembl // 11 // --- --- No cerevisiae_gene -1.24185197000262 1.3703297896579 2.19000286014844 2.38823693663559 1.24000911369332 Max fold change below threshold 4 2.38823693663559 Max fold change at or above threshold -0.816505454495346 -0.211321928970926 1.45211604730836 -0.424288663842086 472.032249450684 192.61276231145 0.408050006192583 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774287_at YDL142C.S1 Cardiolipin synthase; produces cardiolipin, which is an important constituent of mitochondrial membranes; required for normal mitochondrial membrane potential and function 2.3863590342238 534.381988525391 810.911285400391 CRD1 7006 // mitochondrial membrane organization and biogenesis // inferred from mutant phenotype /// 8610 // lipid biosynthesis // inferred from mutant phenotype /// 8610 // lipid biosynthesis // inferred from direct assay 5740 // mitochondrial membrane // inferred from direct assay 8808 // cardiolipin synthase activity // inferred from mutant phenotype /// 8808 // cardiolipin synthase activity // inferred from direct assay 764.963745117188 423.219116210938 645.544860839844 856.858825683594 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL142C /GEN=CRD1 /DB_XREF=GI:6320059 /SEG=NC_001136:-201720,202571 /DEF=Cardiolipin synthase; produces cardiolipin, which is an important constituent of mitochondrial membranes; required for normal mitochondrial membrane potential and function /NOTE=Crd1p; go_component: mitochondrial membrane [goid GO:0005740] [evidence IDA] [pmid 9614098]; go_function: cardiolipin synthase activity [goid GO:0008808] [evidence IDA] [pmid 7564918]; go_function: cardiolipin synthase activity [goid GO:0008808] [evidence IMP] [pmid 9614098]; go_process: lipid biosynthesis [goid GO:0008610] [evidence IDA] [pmid 7564918]; go_process: lipid biosynthesis [goid GO:0008610] [evidence IMP] [pmid 9614098]; go_process: mitochondrial membrane organization and biogenesis [goid GO:0007006] [evidence IMP] [pmid 10777514] --- --- --- --- --- S0002301 // span:84-106,152-174,255-274 // numtm:3 S0002301 // CRD1 SGDID:S0002301, Chr IV from 202571-201720, reverse complement, Verified ORF // sgd // 11 // --- /// YDL142C // cdna:known chromosome:SGD1:IV:201720:202571:-1 gene:YDL142C // ensembl // 11 // --- --- No cerevisiae_gene -2.3863590342238 -1.80748864079174 1.45541964416653 -1.18498928815262 1.12012998152263 Max fold change below threshold 4 2.3863590342238 Max fold change at or above threshold 0.492506374255057 -1.33068123927423 -0.144586390985351 0.982761256004519 672.646636962891 187.443478866505 0.278665600281365 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779593_at YOR377W.S1 Alcohol acetyltransferase with potential roles in lipid and sterol metabolism; responsible for the major part of volatile acetate ester production during fermentation 2.38632757697115 1282.63635253906 698.632781982422 ATF1 6113 // fermentation // traceable author statement /// 6631 // fatty acid metabolism // traceable author statement /// 30636 // acetate derivative biosynthesis // traceable author statement 5811 // lipid particle // inferred from direct assay /// 12505 // endomembrane system // traceable author statement 4026 // alcohol O-acetyltransferase activity // inferred from direct assay 598.190307617188 1137.79467773438 1427.47802734375 799.075256347656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR377W /GEN=ATF1 /DB_XREF=GI:6324953 /SEG=NC_001147:+1046222,1047799 /DEF=Alcohol acetyltransferase with potential roles in lipid and sterol metabolism; responsible for the major part of volatile acetate ester production during fermentation /NOTE=Atf1p; go_component: endomembrane system [goid GO:0012505] [evidence TAS] [pmid 11015726]; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 15042596]; go_function: alcohol O-acetyltransferase activity [goid GO:0004026] [evidence IDA] [pmid 8085822]; go_process: acetate derivative biosynthesis [goid GO:0030636] [evidence TAS] [pmid 15042596]; go_process: fatty acid metabolism [goid GO:0006631] [evidence TAS] [pmid 11015726]; go_process: fermentation [goid GO:0006113] [evidence TAS] [pmid 10653746] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 3.40000009536743 --- S0005904 // ATF1 SGDID:S0005904, Chr XV from 1046222-1047799, Verified ORF // sgd // 11 // --- /// GENSCAN00000017824 // cdna:Genscan chromosome:SGD1:XV:1046222:1047799:1 // ensembl // 11 // --- /// GENEFINDER00000022873 // cdna:GeneFinder chromosome:SGD1:XV:1046222:1047799:1 // ensembl // 11 // --- /// YOR377W // cdna:known chromosome:SGD1:XV:1046222:1047799:1 gene:YOR377W // ensembl // 11 // --- --- No cerevisiae_gene -1.11304440457476 1.90206137285412 1.53811596051323 2.38632757697115 1.33582113613754 Max fold change below threshold 4 2.38632757697115 Max fold change at or above threshold -1.07048509064244 0.40141421444768 1.19159447353939 -0.522523597344627 990.634567260742 366.604134026782 0.370069999717958 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772517_at YKL062W.S1 Transcriptional activator related to Msn2p; activated in stress conditions, which results in translocation from the cytoplasm to the nucleus; binds DNA at stress response elements of responsive genes, inducing gene expression 2.38618314252109 628.800140380859 346.747360229492 MSN4 1302 // replicative cell aging // inferred from mutant phenotype /// 1324 // age-dependent response to oxidative stress during chronological cell aging // inferred from mutant phenotype /// 6355 // regulation of transcription, DNA-dependent // traceable author statement /// 6950 // response to stress // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // traceable author statement 3677 // DNA binding // traceable author statement /// 3700 // transcription factor activity // traceable author statement 331.124328613281 477.233093261719 780.3671875 362.370391845703 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL062W /GEN=MSN4 /DB_XREF=GI:6322788 /SEG=NC_001143:+322873,324765 /DEF=Transcription factor. Multicopy suppressor of snf1 mutation. Key regulator of stress-responsive gene expression. /NOTE=Msn4p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 10366774]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9472026]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 12395196]; go_function: transcription factor activity [goid GO:0003700] [evidence TAS] [pmid 11058591]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence TAS] [pmid 12090248]; go_process: response to stress [goid GO:0006950] [evidence TAS] [pmid 12090248] --- --- --- --- --- --- S0001545 // MSN4 SGDID:S0001545, Chr XI from 322873-324765, Verified ORF // sgd // 11 // --- /// GENSCAN00000018371 // cdna:Genscan chromosome:SGD1:XI:322873:324765:1 // ensembl // 11 // --- /// GENEFINDER00000023093 // cdna:GeneFinder chromosome:SGD1:XI:322942:324926:1 // ensembl // 11 // --- /// YKL062W // cdna:known chromosome:SGD1:XI:322873:324765:1 gene:YKL062W // ensembl // 11 // --- --- No cerevisiae_gene 2.38618314252109 1.44125046703855 1.35622281522268 2.35671957650502 1.09436353820113 Max fold change below threshold 4 2.38618314252109 Max fold change at or above threshold -0.764410137147558 -0.0514357793931854 1.42778305236568 -0.611937135824932 487.773750305176 204.92849856288 0.420130231351455 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774128_at SPAC1639.01c.S1 --- 2.38563472587102 --- --- --- --- 9.10802936553955 5.39520072937012 7.89942264556885 3.81786417961121 0.129638999700546 0.274170011281967 0.129638999700546 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1639.01c /DEF=GNS1SUR4 family protein --- --- --- --- --- --- SPAC1639.01c // ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.5341553974604 -1.68817247446564 -2.24731535254087 -1.15299937403003 -2.38563472587102 Max fold change below threshold 4 2.38563472587102 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774353_at YDR185C.S1 Hypothetical protein 2.38561306751461 268.340972900391 643.732269287109 --- --- 5739 // mitochondrion // inferred from direct assay --- 606.96044921875 254.425354003906 282.256591796875 680.504089355469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR185C /GEN=ATC1 /DB_XREF=GI:6320391 /SEG=NC_001136:-831927,832466 /DEF=Hypothetical ORF /NOTE=Ydr185cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002593 // YDR185C SGDID:S0002593, Chr IV from 832468-831929, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023581 // cdna:GeneFinder chromosome:SGD1:IV:831818:832468:-1 // ensembl // 11 // --- /// YDR185C // cdna:known chromosome:SGD1:IV:831929:832468:-1 gene:YDR185C // ensembl // 11 // --- --- No cerevisiae_gene -2.33632526674255 -2.38561306751461 1.61092369203294 -2.15038538287016 1.12116710443223 Max fold change below threshold 4 2.38561306751461 Max fold change at or above threshold 0.688845365567056 -0.92019258129284 -0.79316546165337 1.02451267737915 456.03662109375 219.096818631798 0.480436895849111 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780190_at YPL082C.S1 Essential abundant protein involved in regulation of transcription, removes Spt15p (TBP) from DNA via its C-terminal ATPase activity, forms a complex with TBP that binds TATA DNA with high affinity but with altered specificity 2.3850783852741 302.995544433594 215.073234558105 MOT1 6357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay 228 // nuclear chromosome // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 16887 // ATPase activity // inferred from direct assay 176.042419433594 296.024963378906 309.966125488281 254.104049682617 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL082C /GEN=MOT1 /DB_XREF=GI:6325175 /SEG=NC_001148:-398475,404078 /DEF=Essential abundant protein involved in regulation of transcription, removes Spt15p (TBP) from DNA via its C-terminal ATPase activity, forms a complex with TBP that binds TATA DNA with high affinity but with altered specificity /NOTE=Mot1p; go_component: nuclear chromosome [goid GO:0000228] [evidence IDA] [pmid 11880621]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 9234740]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IDA] [pmid 9234740] --- --- --- --- --- --- S0006003 // MOT1 SGDID:S0006003, Chr XVI from 404080-398477, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017126 // cdna:Genscan chromosome:SGD1:XVI:398477:404005:-1 // ensembl // 11 // --- /// GENEFINDER00000020941 // cdna:GeneFinder chromosome:SGD1:XVI:398477:404005:-1 // ensembl // 11 // --- /// YPL082C // cdna:known chromosome:SGD1:XVI:398477:404080:-1 gene:YPL082C // ensembl // 11 // --- --- No cerevisiae_gene 2.3850783852741 1.68155473170245 1.0722305297095 1.76074679321938 1.44342511594752 Max fold change below threshold 4 2.3850783852741 Max fold change at or above threshold -1.37846471633446 0.614399211110504 0.845956554044484 -0.0818910488205273 259.03438949585 60.2060894840628 0.232425083021756 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772658_at YOR020C.S1 Mitochondrial matrix co-chaperonin that inhibits the ATPase activity of Hsp60p, a mitochondrial chaperonin; involved in protein folding and sorting in the mitochondria; 10 kD heat shock protein with similarity to E. coli groES 2.38488357974811 7271.41235351563 3601.35791015625 HSP10 6457 // protein folding // inferred from direct assay 5759 // mitochondrial matrix // inferred from direct assay 51082 // unfolded protein binding // inferred from direct assay 3844.587890625 9168.89453125 5373.93017578125 3358.1279296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR020C /GEN=HSP10 /DB_XREF=GI:6324594 /SEG=NC_001147:-370523,370843 /DEF=Homolog of E. coli GroES protein; regulates Hsp60, the yeast mitochondrial chaperonin, and is thereby involved in protein folding and sorting in mitochondria /NOTE=Hsp10p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 7903252]; go_function: chaperone activity [goid GO:0003754] [evidence IDA] [pmid 7902576]; go_process: protein folding [goid GO:0006457] [evidence IDA] [pmid 7902576] --- --- --- --- --- --- S0005546 // HSP10 SGDID:S0005546, Chr XV from 370843-370523, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017480 // cdna:Genscan chromosome:SGD1:XV:370523:370843:-1 // ensembl // 11 // --- /// GENEFINDER00000022930 // cdna:GeneFinder chromosome:SGD1:XV:370523:370843:-1 // ensembl // 11 // --- /// YOR020C // cdna:known chromosome:SGD1:XV:370523:370843:-1 gene:YOR020C // ensembl // 11 // --- --- No cerevisiae_gene 1.07337132809972 2.38488357974811 -1.08092002324185 1.39779095410604 -1.1448604612817 Max fold change below threshold 4 2.38488357974811 Max fold change at or above threshold -0.604695607434305 1.41791427959502 -0.0237255327569496 -0.789493139403761 5436.38513183594 2632.39425198549 0.484217763853772 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776353_at YMR211W.S1 Essential protein involved in mtDNA inheritance, may also function in the partitioning of the mitochondrial organelle or in the segregation of chromosomes, exhibits regions similar to members of a GTPase family 2.38473102511873 469.594482421875 247.41480255127 DML1 2 // mitochondrial genome maintenance // inferred from mutant phenotype /// 6276 // plasmid maintenance // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 5198 // structural molecule activity // inferred from sequence similarity 216.916000366211 421.902648925781 517.286315917969 277.913604736328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR211W /GEN=DML1 /DB_XREF=GI:6323867 /SEG=NC_001145:+689082,690509 /DEF=Essential protein involved in mtDNA inheritance, may also function in the partitioning of the mitochondrial organelle or in the segregation of chromosomes, exhibits regions similar to members of a GTPase family /NOTE=Dml1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14690591]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14690591]; go_function: structural molecule activity [goid GO:0005198] [evidence ISS] [pmid 14690591]; go_process: mitochondrial genome maintenance [goid GO:0000002] [evidence IMP] [pmid 12702300]; go_process: plasmid maintenance [goid GO:0006276] [evidence IMP] [pmid 12702300] --- --- --- --- --- --- S0004824 // DML1 SGDID:S0004824, Chr XIII from 689082-690509, Verified ORF // sgd // 11 // --- /// GENSCAN00000018892 // cdna:Genscan chromosome:SGD1:XIII:689082:690509:1 // ensembl // 11 // --- /// GENEFINDER00000021799 // cdna:GeneFinder chromosome:SGD1:XIII:689082:690509:1 // ensembl // 11 // --- /// YMR211W // cdna:known chromosome:SGD1:XIII:689082:690509:1 gene:YMR211W // ensembl // 11 // --- --- No cerevisiae_gene 2.32290111985904 1.94500474014595 1.86932532215723 2.38473102511873 1.28120380362508 Max fold change below threshold 4 2.38473102511873 Max fold change at or above threshold -1.03842782631777 0.464968468046919 1.16452354886135 -0.591064190590501 358.504642486572 136.34904471159 0.380327138209088 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779020_at YDR045C.S1 RNA polymerase III subunit C11; mediates pol III RNA cleavage activity and is important for termination of transcription 2.38463932666941 122.606067657471 306.81266784668 RPC11 6383 // transcription from RNA polymerase III promoter // traceable author statement 5666 // DNA-directed RNA polymerase III complex // inferred from direct assay 3899 // DNA-directed RNA polymerase activity // inferred from direct assay 273.502349853516 114.693382263184 130.518753051758 340.122985839844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR045C /GEN=RPC11 /DB_XREF=GI:6320250 /SEG=NC_001136:-547974,548306 /DEF=RNA polymerase III subunit C11; mediates pol III RNA cleavage activity and is important for termination of transcription /NOTE=Rpc11p; go_component: DNA-directed RNA polymerase III complex [goid GO:0005666] [evidence IDA] [pmid 9869639]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence IDA] [pmid 9869639]; go_process: transcription from Pol III promoter [goid GO:0006383] [evidence TAS] --- --- --- --- --- --- S0002452 // RPC11 SGDID:S0002452, Chr IV from 548307-547975, reverse complement, Verified ORF // sgd // 11 // --- /// YDR045C // cdna:known chromosome:SGD1:IV:547975:548307:-1 gene:YDR045C // ensembl // 11 // --- --- No cerevisiae_gene 1.37807595854778 -2.38463932666941 1.23769775583358 -2.09550232023024 1.24358341353195 Max fold change below threshold 4 2.38463932666941 Max fold change at or above threshold 0.534655134993625 -0.909531347309795 -0.765617644468687 1.14049385678486 214.709367752075 109.964308305281 0.512154217846034 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-Scv2-r2-Bs-lys-5_at AFFX-Scv2-r2-Bs-lys-5 --- 2.3844571448523 --- --- --- --- 0.407056748867035 0.551203608512878 0.525440633296967 0.534625887870789 0.870360970497131 0.696289002895355 0.932372987270355 0.901611328125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 411-659 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). --- --- --- --- --- --- AFFX-Scv2-r2-Bs-lys-5 // --- // affx // --- // --- --- AFFX_control No 1.73121511070202 1.35411981264787 -2.3844571448523 1.29082894402176 1.31339399078585 Max fold change below threshold 0 2.3844571448523 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772743_at YDR369C.S1 Protein required for DNA repair; component of the Mre11 complex, which is involved in double strand breaks, meiotic recombination, telomere maintenance, and checkpoint signaling 2.38419595422498 110.323932647705 175.2705078125 XRS2 723 // telomere maintenance // inferred from mutant phenotype /// 727 // double-strand break repair via break-induced replication // traceable author statement /// 6303 // double-strand break repair via nonhomologous end-joining // inferred from mutant phenotype /// 30435 // sporulation // inferred from mutant phenotype /// 42138 // meiotic DNA double-strand break formation // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 30870 // Mre11 complex // inferred from physical interaction 3677 // DNA binding // inferred from direct assay /// 5515 // protein binding // inferred from physical interaction /// 42162 // telomeric DNA binding // inferred from direct assay 182.998733520508 115.661415100098 104.986450195313 167.542282104492 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR369C /GEN=XRS2 /DB_XREF=GI:6320577 /SEG=NC_001136:-1215004,1217568 /DEF=classified as an early recombination function, required for DNA repair but dispensable for mitotic recombination (xrs2 is hyper-Rec during vegatative growth), required for double strand breaks, meiotic recombination and spore viability /NOTE=Xrs2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9845372]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 14522986]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 9845372]; go_process: double-strand break repair via break-induced replication [goid GO:0000727] [evidence TAS] [pmid 11459961]; go_process: double-strand break repair via nonhomologous end-joining [goid GO:0006303] [evidence IMP] [pmid 12399380]; go_process: meiotic DNA double-strand break formation [goid GO:0042138] [evidence TAS] [pmid 9334324] --- --- --- --- --- --- S0002777 // XRS2 SGDID:S0002777, Chr IV from 1217570-1215006, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023690 // cdna:GeneFinder chromosome:SGD1:IV:1215006:1216964:-1 // ensembl // 10 // --- /// GENSCAN00000025392 // cdna:Genscan chromosome:SGD1:IV:1215006:1217174:-1 // ensembl // 10 // --- /// YDR369C // cdna:known chromosome:SGD1:IV:1215006:1217570:-1 gene:YDR369C // ensembl // 10 // --- --- No cerevisiae_gene -1.9444520556496 -1.58219345113609 2.38419595422498 -1.7430700169409 -1.09225403415704 Max fold change below threshold 4 2.38419595422498 Max fold change at or above threshold 1.05038614762245 -0.709004997081593 -0.987920747872951 0.646539597332092 142.797220230103 38.2730802204516 0.268023986452808 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778687_at YDR251W.S1 Essential protein of unknown function; exhibits variable expression during colony morphogenesis; overexpression permits survival without protein phosphatase 2A, inhibits growth, and induces a filamentous phenotype 2.38418290833354 1364.8359375 1966.70819091797 PAM1 7124 // pseudohyphal growth // inferred from mutant phenotype 5933 // bud // inferred from direct assay /// 5935 // bud neck // inferred from direct assay --- 2056.349609375 1430.70812988281 1298.96374511719 1877.06677246094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR251W /GEN=PAM1 /DB_XREF=GI:6320457 /SEG=NC_001136:+960606,963098 /DEF=multicopy suppressor of protein phosphatase 2A /NOTE=Pam1p; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 14562095]; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 8106383] --- --- --- --- scop // a.4.5.C-terminal fragment of elongation factor SelB // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; C-terminal fragment of elongation factor SelB // 3.29999995231628 --- S0002659 // PAM1 SGDID:S0002659, Chr IV from 960608-963100, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023628 // cdna:GeneFinder chromosome:SGD1:IV:960608:963100:1 // ensembl // 10 // --- /// GENSCAN00000025292 // cdna:Genscan chromosome:SGD1:IV:960608:963100:1 // ensembl // 10 // --- /// YDR251W // cdna:known chromosome:SGD1:IV:960608:963100:1 gene:YDR251W // ensembl // 10 // --- --- No cerevisiae_gene -2.38418290833354 -1.43729497751818 -1.12731562204233 -1.58306928665625 -1.09551223192716 Max fold change below threshold 4 2.38418290833354 Max fold change at or above threshold 1.08745827464439 -0.654472392530424 -1.02127924849143 0.588293366377459 1665.77206420898 359.165546184967 0.215615061569376 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776404_at YDR362C.S1 One of six subunits of RNA polymerase III transcription initiation factor complex (TFIIIC); part of TFIIIC TauB domain that binds BoxB promoter sites of tRNA and other genes; cooperates with Tfc3p in DNA binding; human homolog is TFIIIC-110 2.38373328625521 349.757614135742 589.040344238281 TFC6 6384 // transcription initiation from RNA polymerase III promoter // traceable author statement 127 // transcription factor TFIIIC complex // traceable author statement 3709 // RNA polymerase III transcription factor activity // traceable author statement 562.869934082031 236.129577636719 463.385650634766 615.210754394531 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR362C /GEN=TFC6 /DB_XREF=GI:6320569 /SEG=NC_001136:-1196667,1198685 /DEF=91 kDa tau91 subunit of transcription factor IIIC (TFIIIC) /NOTE=Tfc6p; go_component: transcription factor TFIIIC complex [goid GO:0000127] [evidence TAS] [pmid 10384303]; go_function: RNA polymerase III transcription factor activity [goid GO:0003709] [evidence TAS] [pmid 10384303]; go_process: transcription initiation from Pol III promoter [goid GO:0006384] [evidence TAS] [pmid 10384303] --- --- --- --- --- --- S0002770 // TFC6 SGDID:S0002770, Chr IV from 1198687-1196669, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023861 // cdna:GeneFinder chromosome:SGD1:IV:1196669:1198687:-1 // ensembl // 10 // --- /// GENSCAN00000025385 // cdna:Genscan chromosome:SGD1:IV:1196669:1198687:-1 // ensembl // 10 // --- /// YDR362C // cdna:known chromosome:SGD1:IV:1196669:1198687:-1 gene:YDR362C // ensembl // 10 // --- --- No cerevisiae_gene -1.6100111584453 -2.38373328625521 1.0413764341832 -1.21469003908729 1.09298919189539 Max fold change below threshold 4 2.38373328625521 Max fold change at or above threshold 0.557109940185463 -1.39034315516239 -0.0358409209986135 0.869074135975536 469.398979187012 167.778293210677 0.357432164640122 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776688_at SPBC27B12.14.S1 --- 2.3834801973564 --- --- --- --- 3.18643021583557 3.89915752410889 7.07626962661743 3.34182691574097 0.665526986122131 0.24609400331974 0.129638999700546 0.357666015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC27B12.14 /DEF=sequence orphan --- --- --- --- --- --- SPBC27B12.14 // |||mitochondrial membrane protein complex assembly protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.49747385998967 1.22367579391235 2.3834801973564 2.22075148278803 1.04876827339043 Max fold change below threshold 4 2.3834801973564 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775509_at YOR267C.S1 Protein kinase implicated in activation of the plasma membrane H(+)-ATPase Pma1p in response to glucose metabolism; plays a role in ion homeostasis 2.38332187552732 4963.11376953125 2427.54370117188 HRK1 6873 // cell ion homeostasis // inferred from genetic interaction /// 6873 // cell ion homeostasis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4672 // protein kinase activity // inferred from sequence similarity 2440.80834960938 5817.23193359375 4108.99560546875 2414.27905273438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR267C /GEN=HRK1 /DB_XREF=GI:6324841 /SEG=NC_001147:-822585,824864 /DEF=Hygromycin Resistance Kinase /NOTE=Hrk1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 11003661]; go_process: cell ion homeostasis [goid GO:0006873] [evidence IGI,IMP] [pmid 11003661] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 0.0040 /// ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-48 /// hanks // 3.1.6 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk5 // 1.0E-52 --- --- S0005793 // HRK1 SGDID:S0005793, Chr XV from 824864-822585, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017699 // cdna:Genscan chromosome:SGD1:XV:822585:824864:-1 // ensembl // 11 // --- /// GENEFINDER00000022714 // cdna:GeneFinder chromosome:SGD1:XV:822585:824864:-1 // ensembl // 11 // --- /// YOR267C // cdna:known chromosome:SGD1:XV:822585:824864:-1 gene:YOR267C // ensembl // 11 // --- --- No cerevisiae_gene -1.17287620156873 2.38332187552732 -1.05895177496254 1.68345687858957 -1.01098849648095 Max fold change below threshold 4 2.38332187552732 Max fold change at or above threshold -0.77364379857693 1.30854569535706 0.255102119009056 -0.79000401578919 3695.32873535156 1621.57363382192 0.438817152668733 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777162_at SPAC2G11.10c.S1 --- 2.38274727438777 --- --- --- --- 3.40689587593079 5.13534021377563 3.0504686832428 4.0144829750061 0.390625 0.1884765625 0.432372987270355 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2G11.10c /DEF=rhodanase-like domain --- --- --- --- --- --- SPAC2G11.10c // |||rhodanase-like domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.58853140093846 1.50733700141999 -2.38274727438777 -1.11684341971644 1.17834037822166 Max fold change below threshold 4 2.38274727438777 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772875_at YDR012W.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Ap and has similarity to E. coli L4 and rat L4 ribosomal proteins 2.38251957979926 510.508987426758 701.721099853516 RPL4B 6412 // protein biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 738.430053710938 456.617095947266 564.40087890625 665.012145996094 0.000488280988065526 0.000488280988065526 0.000488280988065526 0.000488280988065526 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR012W /GEN=RPL4B /DB_XREF=GI:6320215 /SEG=NC_001136:+471850,472938 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Ap and has similarity to E. coli L4 and rat L4 ribosomal proteins /NOTE=Rpl4bp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0002419 // RPL4B SGDID:S0002419, Chr IV from 471850-472938, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023776 // cdna:GeneFinder chromosome:SGD1:IV:471850:472938:1 // ensembl // 10 // --- /// GENSCAN00000025108 // cdna:Genscan chromosome:SGD1:IV:471850:472938:1 // ensembl // 10 // --- /// YDR012W // cdna:known chromosome:SGD1:IV:471850:472938:1 gene:YDR012W // ensembl // 10 // --- --- No cerevisiae_gene 1.3744459408727 -1.61717566044925 -2.38251957979926 -1.30834320304734 -1.11040085231056 Max fold change below threshold 4 2.38251957979926 Max fold change at or above threshold 1.07955808369437 -1.21975366091267 -0.340345843747652 0.480541420965959 606.115043640137 122.564049187612 0.202212518025508 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777421_at YEL072W.S1 Protein required for sporulation 2.3823640574553 68.4132881164551 89.042854309082 RMD6 --- --- --- 86.2752532958984 58.6673431396484 78.1592330932617 91.8104553222656 0.000732421991415322 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL072W /GEN=RMD6 /DB_XREF=GI:6320763 /SEG=NC_001137:+13720,14415 /DEF=Protein required for sporulation /NOTE=Rmd6p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000798 // RMD6 SGDID:S0000798, Chr V from 13720-14415, Verified ORF // sgd // 11 // --- /// GENSCAN00000016746 // cdna:Genscan chromosome:SGD1:V:13720:14415:1 // ensembl // 11 // --- /// YEL072W // cdna:known chromosome:SGD1:V:13720:14415:1 gene:YEL072W // ensembl // 11 // --- --- No cerevisiae_gene 2.3823640574553 -1.47058395145888 -1.05490968600954 -1.10383955780314 1.06415747059453 Max fold change below threshold 4 2.3823640574553 Max fold change at or above threshold 0.520447824435413 -1.38337225301393 -0.0392266356492209 0.902151064227741 78.7280712127686 14.5013231466903 0.184195077096445 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772366_at YML063W.S1 Ribosomal protein 10 (rp10) of the small (40S) subunit; nearly identical to Rps1Ap and has similarity to rat S3a ribosomal protein /// Ribosomal protein 10 (rp10) of the small (40S) subunit; nearly identical to Rps1Bp and has similarity to rat S3a ribosomal protein 2.38179660491469 1717.22644042969 3348.72998046875 RPS1B /// RPS1A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3919.97143554688 1645.80444335938 1788.6484375 2777.48852539063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML063W /GEN=RPS1B /DB_XREF=GI:6323577 /SEG=NC_001145:+146482,147249 /DEF=Ribosomal protein 10 (rp10) of the small (40S) subunit; nearly identical to Rps1Ap and has similarity to rat S3a ribosomal protein /NOTE=Rps1bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004528 // RPS1B SGDID:S0004528, Chr XIII from 146482-147249, Verified ORF // sgd // 11 // --- /// GENSCAN00000018664 // cdna:Genscan chromosome:SGD1:XIII:146482:147249:1 // ensembl // 11 // --- /// GENEFINDER00000022064 // cdna:GeneFinder chromosome:SGD1:XIII:146482:147249:1 // ensembl // 11 // --- /// YML063W // cdna:known chromosome:SGD1:XIII:146482:147249:1 gene:YML063W // ensembl // 11 // --- --- No cerevisiae_gene -1.05699686078008 -2.38179660491469 -1.82137077517313 -2.19158295915649 -1.41133668049828 Max fold change below threshold 4 2.38179660491469 Max fold change at or above threshold 1.31753657476294 -0.842746644439297 -0.707055868622966 0.232265938299321 2532.97821044922 1052.71705671413 0.415604466067408 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774064_at YDL121C.S1 Hypothetical protein 2.38160990790477 409.844116210938 276.667449951172 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 272.349517822266 446.209625244141 373.478607177734 280.985382080078 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL121C /GEN=UBP1 /DB_XREF=GI:6320082 /SEG=NC_001136:-245133,245582 /DEF=Hypothetical ORF /NOTE=Ydl121cp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 10684247]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002279 // span:7-29 // numtm:1 S0002279 // YDL121C SGDID:S0002279, Chr IV from 245582-245133, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023879 // cdna:GeneFinder chromosome:SGD1:IV:245133:245582:-1 // ensembl // 11 // --- /// YDL121C // cdna:known chromosome:SGD1:IV:245133:245582:-1 gene:YDL121C // ensembl // 11 // --- --- No cerevisiae_gene 2.38160990790477 1.63837126943377 1.53242964836987 1.37132097814642 1.03170875545096 Max fold change below threshold 4 2.38160990790477 Max fold change at or above threshold -0.859481162720995 1.24794173894182 0.366342070062794 -0.754802646283615 343.255783081055 82.4989171773235 0.240342395506976 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770623_at YPL134C.S1 Mitochondrial inner membrane transporter, exports 2-oxoadipate and 2-oxoglutarate from the mitochondrial matrix to the cytosol for use in lysine and glutamate biosynthesis and in lysine catabolism 2.38132346494848 4210.97473144531 1964.51141357422 ODC1 6839 // mitochondrial transport // inferred from direct assay 5739 // mitochondrion // inferred from direct assay /// 5743 // mitochondrial inner membrane // inferred from direct assay 5342 // organic acid transporter activity // inferred from direct assay /// 5478 // intracellular transporter activity // inferred from direct assay 1867.18566894531 4446.373046875 3975.57641601563 2061.83715820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL134C /GEN=ODC1 /DB_XREF=GI:6325123 /SEG=NC_001148:-298570,299502 /DEF=Mitochondrial inner membrane transporter, exports 2-oxoadipate and 2-oxoglutarate from the mitochondrial matrix to the cytosol for use in lysine and glutamate biosynthesis and in lysine catabolism /NOTE=Odc1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 11013234]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 9178508]; go_function: intracellular transporter activity [goid GO:0005478] [evidence IDA] [pmid 11013234]; go_function: organic acid transporter activity [goid GO:0005342] [evidence IDA] [pmid 11013234]; go_process: mitochondrial transport [goid GO:0006839] [evidence IDA] [pmid 11013234] --- --- --- --- --- S0006055 // span:10-32 // numtm:1 S0006055 // ODC1 SGDID:S0006055, Chr XVI from 299502-298570, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017086 // cdna:Genscan chromosome:SGD1:XVI:298570:299502:-1 // ensembl // 11 // --- /// GENEFINDER00000020962 // cdna:GeneFinder chromosome:SGD1:XVI:298570:299502:-1 // ensembl // 11 // --- /// YPL134C // cdna:known chromosome:SGD1:XVI:298570:299502:-1 gene:YPL134C // ensembl // 11 // --- --- No cerevisiae_gene -1.5813559644451 2.38132346494848 1.16673649980698 2.12918108902434 1.10424859857015 Max fold change below threshold 4 2.38132346494848 Max fold change at or above threshold -0.929193827754928 1.03430660671614 0.675895505161386 -0.781008284122598 3087.74307250977 1313.56598279769 0.425412980274297 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778075_at YLR187W.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck; potential Cdc28p substrate; similar to Caf120p and Skg4p 2.37964382220169 141.952117919922 278.902297973633 SKG3 --- 5737 // cytoplasm // inferred from direct assay /// 5933 // bud // inferred from direct assay /// 5935 // bud neck // inferred from direct assay --- 279.64892578125 117.517135620117 166.387100219727 278.155670166016 0.000244141003349796 0.000244141003349796 0.000244140625 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR187W /GEN=EMG1 /DB_XREF=GI:6323216 /SEG=NC_001144:+524867,527947 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck; potential Cdc28p substrate /NOTE=Ylr187wp --- --- --- --- --- --- S0004177 // SKG3 SGDID:S0004177, Chr XII from 524867-527947, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000024683 // cdna:GeneFinder chromosome:SGD1:XII:524867:527947:1 // ensembl // 11 // --- /// GENSCAN00000017965 // cdna:Genscan chromosome:SGD1:XII:525785:527947:1 // ensembl // 11 // --- /// YLR187W // cdna:known chromosome:SGD1:XII:524867:527947:1 gene:YLR187W // ensembl // 11 // --- --- No cerevisiae_gene -1.51744307499478 -2.37964382220169 -1.0735223120371 -1.68071278008904 -1.00536841695279 Max fold change below threshold 4 2.37964382220169 Max fold change at or above threshold 0.848838329387173 -1.13931917675883 -0.540046283717681 0.830527131089341 210.427207946777 81.5487654574317 0.387539074690653 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770128_at YLR256W.S1 Heme-responsive zinc finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type; redox sensing regulator of gene expression (activates CYC1, CYC7, CYP3, CYB2, CTT1, COR2, ROX1, ERG9, ERG11, SOD2 and YHB1; represses HEM13) 2.379570517823 1416.75518798828 678.450622558594 HAP1 9060 // aerobic respiration // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 3704 // specific RNA polymerase II transcription factor activity // inferred from direct assay 607.858642578125 1430.98913574219 1402.52124023438 749.042602539063 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR256W /GEN=HAP1 /DB_XREF=GI:6323285 /SEG=NC_001144:+646417,650925 /DEF=Heme-responsive zinc finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type; redox sensing regulator of gene expression (activates CYC1, CYC7, CYP3, CYB2, CTT1, COR2, ROX1, ERG9, ERG11, SOD2 and YHB1; represses HEM13) /NOTE=Hap1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8182072]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IDA] [pmid 3030565]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 2851658]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IMP] [pmid 2851658] --- --- --- --- --- --- S0004246 // HAP1 SGDID:S0004246, Chr XII from 646417-650925, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024755 // cdna:GeneFinder chromosome:SGD1:XII:646702:650925:1 // ensembl // 11 // --- /// GENSCAN00000018017 // cdna:Genscan chromosome:SGD1:XII:647143:650925:1 // ensembl // 11 // --- /// YLR256W // cdna:known chromosome:SGD1:XII:646417:650925:1 gene:YLR256W // ensembl // 11 // --- --- No cerevisiae_gene 2.379570517823 2.35414788160764 -1.11288206462035 2.30731479655505 1.23226446096436 Max fold change below threshold 4 2.379570517823 Max fold change at or above threshold -1.02195634311565 0.890981471115195 0.824822685526853 -0.693847813526402 1047.60290527344 430.29652456059 0.410743920615872 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771158_at YLR342W-A.S1 Identified by fungal homology and RT-PCR 2.37932790905038 116.244606018066 223.57266998291 --- --- --- --- 195.440643310547 150.348098754883 82.14111328125 251.704696655273 0.000732421991415322 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR342W-A /GEN=FKS1 /DB_XREF=GI:33438845 /SEG=NC_001144:+815810,815983 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ylr342w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028571 // span:4-26 // numtm:1 S0028571 // YLR342W-A SGDID:S0028571, Chr XII from 815810-815983, Uncharacterized ORF // sgd // 11 // --- /// YLR342W-A // cdna:known chromosome:SGD1:XII:815810:815983:1 gene:YLR342W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.37168629519476 -1.29992094964353 -2.25588154665041 -2.37932790905038 1.28788307483887 Max fold change below threshold 4 2.37932790905038 Max fold change at or above threshold 0.356030725006298 -0.272761692023597 -1.22387313798216 1.14060410499946 169.908638000488 71.7129267694718 0.422067574747234 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774363_at SPBC1348.11.S1 --- 2.3791833038577 --- --- --- --- 3.87662792205811 9.2232084274292 8.36498546600342 5.48595523834229 0.149657994508743 0.171387001872063 0.0461426004767418 0.0805663987994194 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1348.11 /DEF=transmembrane transporter pseudogene --- --- --- --- --- --- SPBC1348.11 // ||SPAC1348.11|membrane transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.30975259964821 2.3791833038577 2.20153168350128 2.15779941593219 1.41513587288764 Max fold change below threshold 4 2.3791833038577 Max fold change at or above threshold AAAPPA No 4 0 AAPA 3 1 0 No No x = 1
1774148_at YMR074C.S1 Hypothetical protein 2.37867390064228 872.464385986328 426.897018432617 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 406.362426757813 966.603698730469 778.325073242188 447.431610107422 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR074C /GEN=ABF2 /DB_XREF=GI:6323719 /SEG=NC_001145:-413035,413472 /DEF=Hypothetical ORF /NOTE=Ymr074cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004678 // YMR074C SGDID:S0004678, Chr XIII from 413472-413035, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018773 // cdna:Genscan chromosome:SGD1:XIII:413035:413472:-1 // ensembl // 11 // --- /// GENEFINDER00000021867 // cdna:GeneFinder chromosome:SGD1:XIII:413035:413472:-1 // ensembl // 11 // --- /// YMR074C // cdna:known chromosome:SGD1:XIII:413035:413472:-1 gene:YMR074C // ensembl // 11 // --- --- No cerevisiae_gene 1.46928569347245 2.37867390064228 1.08605393459322 1.91534704488331 1.10106540527697 Max fold change below threshold 4 2.37867390064228 Max fold change at or above threshold -0.904497576194402 1.17811159750085 0.47821529876518 -0.75182932007163 649.680702209473 269.009317277998 0.414063887634549 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774721_at YBR247C.S1 Protein associated with U3 and U14 snoRNAs, required for pre-rRNA processing and 40S ribosomal subunit synthesis; localized in the nucleus and concentrated in the nucleolus 2.3785922001787 186.367530822754 318.404418945313 ENP1 6364 // rRNA processing // inferred from physical interaction /// 6365 // 35S primary transcript processing // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // traceable author statement 30515 // snoRNA binding // inferred from direct assay 292.307189941406 141.400802612305 231.334259033203 344.501647949219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR247C /GEN=ENP1 /DB_XREF=GI:6319724 /SEG=NC_001134:-712961,714412 /DEF=Protein associated with U3 and U14 snoRNAs, required for pre-rRNA processing and 40S ribosomal subunit synthesis; localized in the nucleus and concentrated in the nucleolus /NOTE=Enp1p; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 12527778]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9034325]; go_function: snoRNA binding [goid GO:0030515] [evidence IDA] [pmid 12527778]; go_process: cell growth and/or maintenance [goid GO:0008151] [evidence IMP] [pmid 9034325]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP] [pmid 12527778]; go_process: rRNA processing [goid GO:0006364] [evidence IPI] [pmid 12527778] --- --- --- --- --- --- S0000451 // ENP1 SGDID:S0000451, Chr II from 714450-712999, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021336 // cdna:Genscan chromosome:SGD1:II:712999:714450:-1 // ensembl // 11 // --- /// GENEFINDER00000022284 // cdna:GeneFinder chromosome:SGD1:II:712999:714450:-1 // ensembl // 11 // --- /// YBR247C // cdna:known chromosome:SGD1:II:712999:714450:-1 gene:YBR247C // ensembl // 11 // --- --- No cerevisiae_gene 2.3785922001787 -2.06722440425504 1.2474030419942 -1.26357069274141 1.17856029479903 Max fold change below threshold 4 2.3785922001787 Max fold change at or above threshold 0.457527742685148 -1.27197519584585 -0.241268809554947 1.05571626271565 252.385974884033 87.2541953916993 0.345717290478566 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770764_at YDL199C.S1 Hypothetical protein 2.37839664117389 379.596649169922 889.865142822266 --- --- --- --- 821.5107421875 345.4052734375 413.788024902344 958.219543457031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL199C /GEN=MGT1 /DB_XREF=GI:6320002 /SEG=NC_001136:-101291,103354 /DEF=Hypothetical ORF /NOTE=Ydl199cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002358 // span:119-141,161-183,196-218,222-244,257-279,289-311,409-431,441-460,467-489,504-526,533-552 // numtm:11 S0002358 // YDL199C SGDID:S0002358, Chr IV from 103354-101291, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023482 // cdna:GeneFinder chromosome:SGD1:IV:101291:103336:-1 // ensembl // 11 // --- /// GENSCAN00000024954 // cdna:Genscan chromosome:SGD1:IV:101291:103354:-1 // ensembl // 11 // --- /// YDL199C // cdna:known chromosome:SGD1:IV:101291:103354:-1 gene:YDL199C // ensembl // 11 // --- --- No cerevisiae_gene -2.04855107469684 -2.37839664117389 1.39031453460243 -1.98534199335851 1.16641145909487 Max fold change below threshold 4 2.37839664117389 Max fold change at or above threshold 0.620241670339873 -0.96076643742371 -0.733687162781162 1.074211929865 634.730895996094 301.14043464551 0.474437965041744 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770555_at SPBP35G2.09.S1 --- 2.37738900154736 --- --- --- --- 3.28284406661987 7.29389524459839 2.7251660823822 7.2014045715332 0.601073980331421 0.567627012729645 0.62646484375 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP35G2.09 /DEF=U1 snRNP component (predicted) --- --- --- --- --- --- SPBP35G2.09 // |||U1 snRNP component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.26404930208544 2.22182202278905 2.37738900154736 -1.20463999895015 2.19364807629989 Max fold change below threshold 4 2.37738900154736 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769709_at YCL054W.S1 AdoMet-dependent methyltransferase involved in rRNA processing and 60S ribosomal subunit maturation; methylates G2922 in the putative tRNA docking site of the large subunit rRNA and in the absence of snR52, U2921; suppressor of PAB1 mutants 2.37709582580793 81.8832550048828 120.602504730225 SPB1 30489 // processing of 27S pre-rRNA // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay 8649 // rRNA methyltransferase activity // inferred from mutant phenotype /// 8650 // rRNA (uridine-2'-O-)-methyltransferase activity // inferred from direct assay /// 8650 // rRNA (uridine-2'-O-)-methyltransferase activity // inferred from mutant phenotype /// 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from sequence similarity /// 16435 // rRNA (guanine) methyltransferase activity // inferred from mutant phenotype 117.721221923828 97.7208862304688 66.0456237792969 123.483787536621 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL054W /GEN=SPB1 /DB_XREF=GI:6319796 /SEG=NC_001135:+31449,33974 /DEF=Suppressor of PaB1 mutant; encodes a S-adenosylmethionine-dependent methyltransferase; involved in 60S ribosomal subunit biogenesis and rRNA processing /NOTE=Spb1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 10556316]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10556316]; go_function: RNA methyltransferase activity [goid GO:0008173] [evidence ISS] [pmid 10556316]; go_function: RNA methyltransferase activity [goid GO:0008173] [evidence IMP] [pmid 14636587]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 10556316]; go_process: ribosome biogenesis [goid GO:0007046] [evidence IMP] [pmid 10556316] --- --- --- --- --- --- S0000559 // SPB1 SGDID:S0000559, Chr III from 31449-33974, Verified ORF // sgd // 11 // --- /// GENSCAN00000022424 // cdna:Genscan chromosome:SGD1:III:31449:33974:1 // ensembl // 11 // --- /// GENEFINDER00000023398 // cdna:GeneFinder chromosome:SGD1:III:31449:33974:1 // ensembl // 11 // --- /// YCL054W // cdna:known chromosome:SGD1:III:31449:33974:1 gene:YCL054W // ensembl // 11 // --- --- No cerevisiae_gene 2.37709582580793 -1.20466797288545 1.03240631405559 -1.7824227433632 1.04895094969811 Max fold change below threshold 4 2.37709582580793 Max fold change at or above threshold 0.635438154901741 -0.13581518885104 -1.35727729100088 0.857654324950177 101.242879867554 25.9322515167861 0.256139014918489 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776656_at SPAC1D4.10.S1 --- 2.37652498199939 --- --- --- --- 1.62235009670258 3.85555553436279 2.59731650352478 1.17809212207794 0.45751953125 0.5 0.366210997104645 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1D4.10 /DEF=ribonuclease (predicted) --- --- --- --- --- --- SPAC1D4.10 // |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.8029568247155 2.37652498199939 1.10704388828223 1.60095931747643 -1.37709952074125 Max fold change below threshold 2 2.37652498199939 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778491_at YKR079C.S1 tRNase Z, involved in RNA processing, has two putative nucleotide triphosphate-binding motifs (P-loop) and a conserved histidine motif, homolog of the human candidate prostate cancer susceptibility gene ELAC2 2.37576303550825 151.175231933594 371.479156494141 TRZ1 42779 // removal of tRNA 3'-trailer sequence // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 17076 // purine nucleotide binding // inferred from sequence similarity /// 42781 // 3'-tRNA processing endoribonuclease activity // inferred from direct assay 351.141082763672 147.801391601563 154.549072265625 391.817230224609 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR079C /GEN=ECM4 /DB_XREF=GI:6322932 /SEG=NC_001143:-586431,588947 /DEF=Protein required for cell viability /NOTE=Ykr079cp --- --- --- --- --- --- S0001787 // TRZ1 SGDID:S0001787, Chr XI from 588947-586431, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018481 // cdna:Genscan chromosome:SGD1:XI:586431:588947:-1 // ensembl // 11 // --- /// GENEFINDER00000022943 // cdna:GeneFinder chromosome:SGD1:XI:586431:588467:-1 // ensembl // 11 // --- /// YKR079C // cdna:known chromosome:SGD1:XI:586431:588947:-1 gene:YKR079C // ensembl // 11 // --- --- No cerevisiae_gene 1.0064135038259 -2.37576303550825 -1.0847796979675 -2.27203617346963 1.11583989871192 Max fold change below threshold 4 2.37576303550825 Max fold change at or above threshold 0.70002187915896 -0.884835819502745 -0.832243462410866 1.01705740275465 261.327194213867 128.301544885585 0.490961322534938 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773994_at YGR145W.S1 Essential nucleolar protein of unknown function; contains WD repeats, interacts with Mpp10p and Bfr2p, and has homology to Spb1p 2.37574476090953 216.050476074219 450.546447753906 ENP2 6364 // rRNA processing // inferred from physical interaction 5730 // nucleolus // inferred from direct assay --- 404.062591552734 226.138809204102 205.962142944336 497.030303955078 0.000244141003349796 0.00122069998178631 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR145W /GEN=THI4 /DB_XREF=GI:6321584 /SEG=NC_001139:+781770,783893 /DEF=Essential protein of unknown function /NOTE=Ygr145wp --- --- --- --- --- --- S0003377 // ENP2 SGDID:S0003377, Chr VII from 781772-783895, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000021679 // cdna:GeneFinder chromosome:SGD1:VII:781985:783895:1 // ensembl // 11 // --- /// GENSCAN00000019452 // cdna:Genscan chromosome:SGD1:VII:783224:783895:1 // ensembl // 11 // --- /// YGR145W // cdna:known chromosome:SGD1:VII:781772:783895:1 gene:YGR145W // ensembl // 11 // --- --- No cerevisiae_gene 2.37574476090953 -1.78679012671393 -1.34437020127899 -1.96182942057433 1.23008245342655 Max fold change below threshold 4 2.37574476090953 Max fold change at or above threshold 0.502419386141593 -0.760824547812461 -0.904077186237839 1.16248234790871 333.298461914063 140.846734004665 0.422584410368448 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778395_at YNL054W.S1 Integral vacuolar membrane protein involved in vacuole inheritance and morphology; may function to regulate Fab1p kinase activity 2.37572690572065 535.256774902344 937.924438476563 VAC7 11 // vacuole inheritance // inferred from mutant phenotype /// 6644 // phospholipid metabolism // inferred from mutant phenotype /// 6644 // phospholipid metabolism // inferred from genetic interaction 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 16021 // integral to membrane // inferred from direct assay 30234 // enzyme regulator activity // inferred from genetic interaction 897.658203125 377.845703125 692.667846679688 978.190673828125 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL054W /GEN=VAC7 /DB_XREF=GI:6324274 /SEG=NC_001146:+526084,529581 /DEF=Integral 128-kDa vacuolar membrane protein; may function to regulate Fab1 kinase activity. /NOTE=Vac7p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: integral to membrane [goid GO:0016021] [evidence IDA] [pmid 9372916]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 9372916]; go_function: enzyme regulator activity [goid GO:0030234] [evidence IGI] [pmid 11950935]; go_process: phospholipid metabolism [goid GO:0006644] [evidence IGI,IMP] [pmid 9372916]; go_process: vacuole inheritance [goid GO:0000011] [evidence IMP] [pmid 9372916] --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 0.649999976158142 S0004999 // span:920-942 // numtm:1 S0004999 // VAC7 SGDID:S0004999, Chr XIV from 526085-529582, Verified ORF // sgd // 11 // --- /// GENSCAN00000019991 // cdna:Genscan chromosome:SGD1:XIV:526085:529582:1 // ensembl // 11 // --- /// GENEFINDER00000020421 // cdna:GeneFinder chromosome:SGD1:XIV:526085:529582:1 // ensembl // 11 // --- /// YNL054W // cdna:known chromosome:SGD1:XIV:526085:529582:1 gene:YNL054W // ensembl // 11 // --- --- No cerevisiae_gene -1.84815811649935 -2.37572690572065 -1.01184201808765 -1.29594322506514 1.08971395841175 Max fold change below threshold 4 2.37572690572065 Max fold change at or above threshold 0.601741134255806 -1.34025446431584 -0.164093411789989 0.902606741850023 736.590606689453 267.669247233272 0.363389438858431 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777271_at YOL147C.S1 Peroxisomal membrane protein required for peroxisome proliferation and medium-chain fatty acid oxidation, most abundant protein in the peroxisomal membrane, regulated by Adr1p and Pip2p-Oaf1p, promoter contains ORE and UAS1-like elements 2.37533782698421 2942.12524414063 1400.64593505859 PEX11 7031 // peroxisome organization and biogenesis // traceable author statement /// 16559 // peroxisome division // traceable author statement /// 19395 // fatty acid oxidation // inferred from mutant phenotype 5778 // peroxisomal membrane // traceable author statement --- 1352.67529296875 2671.18969726563 3213.06079101563 1448.61657714844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL147C /GEN=PEX11 /DB_XREF=GI:6324425 /SEG=NC_001147:-47931,48641 /DEF=May promote peroxisomal proliferation by participating in peroxisomal elongation or fission or segregation of peroxisomes to daughter cells /NOTE=Pex11p; go_component: peroxisomal membrane [goid GO:0005778] [evidence TAS]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence TAS] --- --- --- --- --- --- S0005507 // PEX11 SGDID:S0005507, Chr XV from 48641-47931, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017353 // cdna:Genscan chromosome:SGD1:XV:47931:48641:-1 // ensembl // 11 // --- /// GENEFINDER00000022588 // cdna:GeneFinder chromosome:SGD1:XV:47931:48641:-1 // ensembl // 11 // --- /// YOL147C // cdna:known chromosome:SGD1:XV:47931:48641:-1 gene:YOL147C // ensembl // 11 // --- --- No cerevisiae_gene 1.00099755295405 1.97474568445994 1.41885898496144 2.37533782698421 1.07092706185911 Max fold change below threshold 4 2.37533782698421 Max fold change at or above threshold -0.891946958443888 0.544513432266586 1.13485689799302 -0.787423371815715 2171.38558959961 917.891236558731 0.422721436927278 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773806_at SPBC31F10.14c.S1 --- 2.37529864394422 --- --- --- --- 11.1383295059204 22.6399955749512 17.088264465332 8.27326965332031 0.149657994508743 0.018554700538516 0.0375977009534836 0.171387001872063 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31F10.14c /DEF=TPR repeat protein --- --- --- --- --- --- SPBC31F10.14c // |||TPR repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.37529864394422 2.03262038198073 1.41631284523971 1.53418557569598 -1.34630321174776 Max fold change below threshold 4 2.37529864394422 Max fold change at or above threshold AAPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1780120_at YOR031W.S1 Copper-binding metallothionein, required for wild-type copper resistance 2.37487324858909 5047.51989746094 2467.56286621094 CRS5 10038 // response to metal ion // inferred from mutant phenotype 5737 // cytoplasm // inferred from sequence similarity 5507 // copper ion binding // inferred from sequence similarity /// 5507 // copper ion binding // inferred from mutant phenotype 2548.76123046875 6052.98486328125 4042.05493164063 2386.36450195313 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR031W /GEN=CRS5 /DB_XREF=GI:6324605 /SEG=NC_001147:+389212,389421 /DEF=Copper-binding metallothionein, required for wild-type copper resistance /NOTE=Crs5p; go_component: cytoplasm [goid GO:0005737] [evidence ISS] [pmid 7929222]; go_function: copper ion binding [goid GO:0005507] [evidence IMP,ISS] [pmid 7929222]; go_process: response to metal ion [goid GO:0010038] [evidence IMP] [pmid 7929222] --- --- --- --- --- --- S0005557 // CRS5 SGDID:S0005557, Chr XV from 389212-389421, Verified ORF // sgd // 10 // --- /// YOR031W // cdna:known chromosome:SGD1:XV:389212:389421:1 gene:YOR031W // ensembl // 10 // --- --- No cerevisiae_gene -1.39011322596291 2.37487324858909 1.00124409395419 1.58588999366458 -1.06805193774158 Max fold change below threshold 4 2.37487324858909 Max fold change at or above threshold -0.710175966731786 1.34860652011021 0.167155859609626 -0.805586412988054 3757.54138183594 1702.08540980339 0.452978486951951 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774018_at YJL050W.S1 Dead-box family ATP dependent helicase required for mRNA export from the nucleus; co-factor of the exosome complex, required for 3' end formation of 5.8S rRNA 2.37451382876278 124.105144500732 335.243743896484 MTR4 6365 // 35S primary transcript processing // traceable author statement /// 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 16078 // tRNA catabolism // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // traceable author statement /// 31499 // TRAMP complex // inferred from direct assay /// 31499 // TRAMP complex // inferred from physical interaction 4004 // ATP-dependent RNA helicase activity // inferred from sequence similarity 288.977691650391 126.510559082031 121.699729919434 381.509796142578 0.000244141003349796 0.00292969006113708 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL050W /GEN=MTR4 /DB_XREF=GI:6322411 /SEG=NC_001142:+342438,345659 /DEF=Dead-box family helicase required for mRNA export from nucleus /NOTE=Mtr4p; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 10690410]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0003586 // MTR4 SGDID:S0003586, Chr X from 342438-345659, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024450 // cdna:GeneFinder chromosome:SGD1:X:342438:345659:1 // ensembl // 11 // --- /// GENSCAN00000024103 // cdna:Genscan chromosome:SGD1:X:343101:345659:1 // ensembl // 11 // --- /// YJL050W // cdna:known chromosome:SGD1:X:342438:345659:1 gene:YJL050W // ensembl // 11 // --- --- No cerevisiae_gene 1.64224438314408 -2.28421796368012 -1.03155578490587 -2.37451382876278 1.32020500947227 Max fold change below threshold 4 2.37451382876278 Max fold change at or above threshold 0.464631091701179 -0.8082719012112 -0.845963948474261 1.18960475798428 229.674444198608 127.635124964737 0.555721928097347 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774602_at SPCC1753.03c.S1 --- 2.37449140971884 --- --- --- --- 0.862773656845093 1.57918703556061 1.85557997226715 0.549200892448425 0.953857004642487 0.962401986122131 0.904784977436066 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1753.03c /GEN=rec7 /DEF=involved in meiotic recombination (required) (PMID 1339382) --- --- --- --- --- --- SPCC1753.03c // |rec7||meiotic recombination Rec7p |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- SPNCRNA.131 // sanger // 3 // Negative Strand Matching Probes /// SPNCRNA.69 // sanger // 11 // Negative Strand Matching Probes No No -2.37449140971884 1.83036074760932 -1.72441854688633 2.15071468344601 -1.57096186242289 Max fold change below threshold 0 2.37449140971884 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774652_at SPBC26H8.05c.S1 --- 2.37432495111711 --- --- --- --- 2.61998629570007 2.51081609725952 3.48106002807617 1.78542375564575 0.665526986122131 0.828612983226776 0.633789002895355 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC26H8.05c /DEF=serinethreonine protein phosphatase (predicted) --- --- --- --- --- --- SPBC26H8.05c // |||serine/threonine protein phosphatase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.37432495111711 -1.04347996595996 1.30049943493591 1.32865581540991 -1.46743107198799 Max fold change below threshold 3 2.37432495111711 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775479_at YHR137W.S1 Aromatic aminotransferase, catalyzes the first step of tryptophan, phenylalanine, and tyrosine catabolism 2.37424824763093 1817.39837646484 904.437835693359 ARO9 9072 // aromatic amino acid family metabolism // inferred from genetic interaction /// 9072 // aromatic amino acid family metabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8793 // aromatic-amino-acid transaminase activity // inferred from direct assay /// 8793 // aromatic-amino-acid transaminase activity // inferred from sequence similarity 829.574157714844 1665.18176269531 1969.61499023438 979.301513671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR137W /GEN=ARO9 /DB_XREF=GI:6321929 /SEG=NC_001140:+375710,377251 /DEF=Aromatic aminotransferase, catalyzes the first step of tryptophan, phenylalanine, and tyrosine catabolism /NOTE=Aro9p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: aromatic-amino-acid transaminase activity [goid GO:0008793] [evidence IDA] [pmid 9491082]; go_function: aromatic-amino-acid transaminase activity [goid GO:0008793] [evidence ISS] [pmid 9491083]; go_process: aromatic amino acid family metabolism [goid GO:0009072] [evidence IGI,IMP] [pmid 9491083] --- --- --- --- --- --- S0001179 // ARO9 SGDID:S0001179, Chr VIII from 375711-377252, Verified ORF // sgd // 11 // --- /// GENSCAN00000016668 // cdna:Genscan chromosome:SGD1:VIII:375711:377252:1 // ensembl // 11 // --- /// GENEFINDER00000020202 // cdna:GeneFinder chromosome:SGD1:VIII:375861:377252:1 // ensembl // 11 // --- /// YHR137W // cdna:known chromosome:SGD1:VIII:375711:377252:1 gene:YHR137W // ensembl // 11 // --- --- No cerevisiae_gene 2.08539699433693 2.00727294505201 1.82446018880728 2.37424824763093 1.1804870059712 Max fold change below threshold 4 2.37424824763093 Max fold change at or above threshold -0.974958952793429 0.558291059756794 1.11689326390486 -0.70022537086822 1360.9181060791 544.9910961296 0.400458406494243 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778494_at YHL027W.S1 Transcriptional repressor involved in the response to pH; required for alkaline pH-stimulated differentiation pathways such as haploid invasive growth and sporulation; activated by proteolytic processing; has similarity to the A. nidulans transcription factor PacC 2.37382155047476 2284.91943359375 1025.71176147461 RIM101 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 7126 // meiosis // inferred from mutant phenotype /// 9268 // response to pH // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype 5634 // nucleus // inferred from curator 16566 // specific transcriptional repressor activity // inferred from direct assay 997.560974121094 2201.80712890625 2368.03173828125 1053.86254882813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL027W /GEN=RIM101 /DB_XREF=GI:6321760 /SEG=NC_001140:+51109,52986 /DEF=Regulator of IME2 (RIM)Rim101p is similar to the Aspergillus Phenotype-response regulator PacC and the Yarrowia proteinase YlRim1010p; transcriptional activator required for entry into meiosis /NOTE=Rim101p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 12509465]; go_function: specific transcriptional repressor activity [goid GO:0016566] [evidence IDA] [pmid 12509465]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 8367297]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IDA] [pmid 12509465]; go_process: response to pH [goid GO:0009268] [evidence IMP] [pmid 11050096]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 8417990] --- --- --- --- --- --- S0001019 // RIM101 SGDID:S0001019, Chr VIII from 51109-52986, Verified ORF // sgd // 11 // --- /// GENSCAN00000016530 // cdna:Genscan chromosome:SGD1:VIII:51109:52986:1 // ensembl // 11 // --- /// GENEFINDER00000020191 // cdna:GeneFinder chromosome:SGD1:VIII:51331:52986:1 // ensembl // 11 // --- /// YHL027W // cdna:known chromosome:SGD1:VIII:51109:52986:1 gene:YHL027W // ensembl // 11 // --- --- No cerevisiae_gene 1.38553756510248 2.20719052371326 1.45717359093428 2.37382155047476 1.05643923145313 Max fold change below threshold 4 2.37382155047476 Max fold change at or above threshold -0.900385102022653 0.748079626830591 0.975620652835346 -0.823315177643285 1655.31559753418 730.525884908008 0.441321211493583 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769352_at YDL048C.S1 Protein involved in pre-tRNA splicing and in uptake of branched-chain amino acids 2.37299964266556 886.948944091797 496.411849975586 STP4 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 446.745208740234 713.771667480469 1060.12622070313 546.078491210938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL048C /GEN=STP4 /DB_XREF=GI:6320155 /SEG=NC_001136:-366739,368211 /DEF=Involved in pre-tRNA splicing and in uptake of branched-chain amino acids /NOTE=Stp4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002206 // STP4 SGDID:S0002206, Chr IV from 368211-366739, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023696 // cdna:GeneFinder chromosome:SGD1:IV:366739:368109:-1 // ensembl // 11 // --- /// GENSCAN00000025064 // cdna:Genscan chromosome:SGD1:IV:366739:368154:-1 // ensembl // 11 // --- /// YDL048C // cdna:known chromosome:SGD1:IV:366739:368211:-1 gene:YDL048C // ensembl // 11 // --- --- No cerevisiae_gene 1.60410841025656 1.5977153274754 -1.24104286636415 2.37299964266556 1.22234884790552 Max fold change below threshold 4 2.37299964266556 Max fold change at or above threshold -0.909805525993547 0.0820574620932605 1.36858263910237 -0.540834575202081 691.680397033691 269.217081338319 0.389221788694419 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773125_at YGR283C.S1 Hypothetical protein 2.37225125778677 208.989204406738 536.975387573242 --- --- 5730 // nucleolus // inferred from direct assay --- 492.759002685547 210.260528564453 207.717880249023 581.191772460938 0.000244140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR283C /GEN=BGL2 /DB_XREF=GI:6321722 /SEG=NC_001139:-1059020,1060045 /DEF=Hypothetical ORF /NOTE=Ygr283cp; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.Helicase DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Helicase DNA-binding domain // 1.39999997615814 --- S0003515 // YGR283C SGDID:S0003515, Chr VII from 1060046-1059021, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019559 // cdna:Genscan chromosome:SGD1:VII:1059021:1059614:-1 // ensembl // 10 // --- /// GENEFINDER00000021437 // cdna:GeneFinder chromosome:SGD1:VII:1059021:1060046:-1 // ensembl // 11 // --- /// YGR283C // cdna:known chromosome:SGD1:VII:1059021:1060046:-1 gene:YGR283C // ensembl // 11 // --- --- No cerevisiae_gene 1.35633246291958 -2.3435639872583 -1.36236800386637 -2.37225125778677 1.17946454411473 Max fold change below threshold 4 2.37225125778677 Max fold change at or above threshold 0.621324184444449 -0.844095419103569 -0.857285036137613 1.08005627079673 372.98229598999 192.776508132633 0.516851631311225 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776662_at YHR164C.S1 Essential tripartite DNA replication factor with single-stranded DNA-dependent ATPase, ATP-dependent nuclease, and helicase activities; required for Okazaki fragment processing; involved in DNA repair pathways; potential Cdc28p substrate 2.37211757111203 152.361183166504 359.031356811523 DNA2 723 // telomere maintenance // inferred from mutant phenotype /// 1302 // replicative cell aging // inferred from mutant phenotype /// 6261 // DNA-dependent DNA replication // inferred from direct assay /// 6261 // DNA-dependent DNA replication // inferred from mutant phenotype /// 6273 // lagging strand elongation // inferred from genetic interaction /// 6273 // lagging strand elongation // inferred from mutant phenotype /// 6281 // DNA repair // inferred from mutant phenotype /// 6281 // DNA repair // inferred from genetic interaction 784 // nuclear chromosome, telomeric region // inferred from direct assay /// 5634 // nucleus // traceable author statement 14 // single-stranded DNA specific endodeoxyribonuclease activity // inferred from direct assay /// 4003 // ATP-dependent DNA helicase activity // inferred from direct assay /// 17108 // 5'-flap endonuclease activity // inferred from direct assay 323.634063720703 136.432556152344 168.289810180664 394.428649902344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR164C /GEN=DNA2 /DB_XREF=GI:6321958 /SEG=NC_001140:-424610,429178 /DEF=Essential tripartite DNA replication factor with single-stranded DNA-dependent ATPase, ATP-dependent nuclease, and helicase activities; required for Okazaki fragment processing; involved in DNA repair pathways; potential Cdc28p substrate /NOTE=Dna2p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 7644470]; go_function: ATP-dependent DNA helicase activity [goid GO:0004003] [evidence IDA] [pmid 7644470]; go_function: single-stranded DNA specific endodeoxyribonuclease activity [goid GO:0000014] [evidence IDA] [pmid 9756935]; go_process: DNA repair [goid GO:0006281] [evidence IGI,IMP] [pmid 10101169]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence IMP] [pmid 7592912]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence IDA] [pmid 9710536]; go_process: lagging strand elongation [goid GO:0006273] [evidence IGI,IMP] [pmid 10330154]; go_process: replicative cell aging [goid GO:0001302] [evidence IMP] [pmid 12024027] --- --- --- ec // 6P22_YEAST // (Q12471) 6-phosphofructo-2-kinase 2 (EC 2.7.1.105) (Phosphofructokinase 2 II) (6PF-2-K 2) // 7.5 --- --- S0001207 // DNA2 SGDID:S0001207, Chr VIII from 429179-424611, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016690 // cdna:Genscan chromosome:SGD1:VIII:424611:428864:-1 // ensembl // 11 // --- /// GENEFINDER00000020125 // cdna:GeneFinder chromosome:SGD1:VIII:424611:429179:-1 // ensembl // 11 // --- /// YHR164C // cdna:known chromosome:SGD1:VIII:424611:429179:-1 gene:YHR164C // ensembl // 11 // --- --- No cerevisiae_gene -2.15307463362922 -2.37211757111203 1.34006780488269 -1.92307581411657 1.21874887138808 Max fold change below threshold 4 2.37211757111203 Max fold change at or above threshold 0.55028889258695 -0.966023378271338 -0.707983014032539 1.12371749971693 255.696269989014 123.458413656704 0.482832282465478 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770191_at YER142C.S1 3-methyl-adenine DNA glycosylase involved in protecting DNA against alkylating agents; initiates base excision repair by removing damaged bases to create abasic sites that are subsequently repaired 2.37206587953566 903.476104736328 634.129943847656 MAG1 6307 // DNA dealkylation // inferred from genetic interaction /// 6307 // DNA dealkylation // inferred from expression pattern /// 6307 // DNA dealkylation // inferred from sequence similarity 5634 // nucleus // inferred from curator 3905 // alkylbase DNA N-glycosylase activity // inferred from direct assay 623.931579589844 953.559326171875 853.392883300781 644.328308105469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER142C /GEN=MAG1 /DB_XREF=GI:6320990 /SEG=NC_001137:-455141,456031 /DEF=3-methyladenine DNA glycosylase /NOTE=Mag1p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 2265619]; go_function: alkylbase DNA N-glycosylase activity [goid GO:0003905] [evidence IDA] [pmid 2682633]; go_process: DNA dealkylation [goid GO:0006307] [evidence IEP,IGI,ISS] [pmid 2265620] --- --- --- --- --- --- S0000944 // MAG1 SGDID:S0000944, Chr V from 456031-455141, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000016921 // cdna:Genscan chromosome:SGD1:V:455141:456031:-1 // ensembl // 10 // --- /// GENEFINDER00000019743 // cdna:GeneFinder chromosome:SGD1:V:455141:455896:-1 // ensembl // 10 // --- /// YER142C // cdna:known chromosome:SGD1:V:455141:456031:-1 gene:YER142C // ensembl // 10 // --- --- No cerevisiae_gene -2.37206587953566 1.52830752179385 1.31207352021204 1.36776677318013 1.03269064939626 Max fold change below threshold 4 2.37206587953566 Max fold change at or above threshold -0.899770422166711 1.14748807870456 0.525372362426865 -0.773090018964716 768.803024291992 161.00934319811 0.209428602789885 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779974_at SPCC1235.09.S1 --- 2.37196814322693 --- --- --- --- 9.67838764190674 8.92064952850342 14.4765901565552 6.33233213424683 0.0771484375 0.0952147990465164 0.0561522990465164 0.171387001872063 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1235.09 /DEF=WD repeat protein --- --- --- --- --- --- SPCC1235.09 // |||WD repeat protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.37196814322693 -1.08494203375911 1.01362148686632 1.49576465545486 -1.52840808674005 Max fold change below threshold 4 2.37196814322693 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
RPTR-Sc-NM_131175-1_at AFFX-Sc-NM_131175-1 --- 2.37160073870553 --- --- --- --- 0.770892798900604 0.790929079055786 1.82824993133545 0.880135536193848 0.953857004642487 0.974853515625 0.969726979732513 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL NM_131175 /FEA=CDS /DB_XREF=NP_571250.1 GI:18859311 LocusID:30413 /PROD=opsin 1 (cone pigments), long-wave-sensitive, 1 /NOTE=immunolocalized to double cone outer segments; red-sensitive opsin; /GEN=opn1lw1 --- --- --- --- --- --- AFFX-Sc-NM_131175-1 // --- // affx // --- // --- --- No No -1.6544070947923 1.02599100702946 1.87018421633541 2.37160073870553 1.14170937573815 Max fold change below threshold 0 2.37160073870553 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769650_at YDR466W.S1 Protein kinase with similarity to mammalian phosphoinositide-dependent kinase 1 (PDK1) and yeast Pkh1p and Pkh2p, two redundant upstream activators of Pkc1p; identified as a multicopy suppressor of a pkh1 pkh2 double mutant 2.37107517431022 715.242980957031 1354.14837646484 PKH3 196 // MAPKKK cascade during cell wall biogenesis // inferred from genetic interaction --- 4672 // protein kinase activity // inferred from sequence similarity 1341.29077148438 648.80224609375 781.683715820313 1367.00598144531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR466W /GEN=PKH3 /DB_XREF=GI:6320674 /SEG=NC_001136:+1395109,1397805 /DEF=Protein kinase with similarity to mammalian phosphoinositide-dependent kinase 1 (PDK1) and yeast Pkh1p and Pkh2p, two redundant upsteam activators of Pkc1p; identified as a multicopy suppressor of a pkh1/pkh2 double mutant /NOTE=Pkh3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 9020587]; go_process: MAPKKK cascade during cell wall biogenesis [goid GO:0000196] [evidence IGI] [pmid 10567559] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-65 /// hanks // 1.7.2 // AGC group; AGC VII Budding yeast DBF2/20; DBF20 // 5.0E-79 --- --- S0002874 // PKH3 SGDID:S0002874, Chr IV from 1395111-1397807, Verified ORF // sgd // 11 // --- /// GENSCAN00000025466 // cdna:Genscan chromosome:SGD1:IV:1395111:1397807:1 // ensembl // 11 // --- /// GENEFINDER00000023442 // cdna:GeneFinder chromosome:SGD1:IV:1395429:1397807:1 // ensembl // 11 // --- /// YDR466W // cdna:known chromosome:SGD1:IV:1395111:1397807:1 gene:YDR466W // ensembl // 11 // --- YDR467C // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene -2.37107517431022 -2.06733373621916 1.06817354872025 -1.7158995951154 1.01917198754188 Max fold change below threshold 4 2.37107517431022 Max fold change at or above threshold 0.821997854486728 -1.0346009481184 -0.67833861518865 0.890941708820321 1034.69567871094 372.98770440816 0.360480585820985 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774978_at YNL264C.S1 Phosphatidylinositol transfer protein (PITP), downregulates Plb1p-mediated turnover of phosphatidylcholine, found in the cytosol and microsomes, homologous to Pdr16p, deletion affects phospholipid composition 2.37071864367564 233.140815734863 534.280792236328 PDR17 8654 // phospholipid biosynthesis // inferred from mutant phenotype /// 15914 // phospholipid transport // inferred from direct assay /// 42493 // response to drug // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay 8526 // phosphatidylinositol transporter activity // inferred from direct assay 502.811279296875 212.092346191406 254.18928527832 565.750305175781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL264C /GEN=PDR17 /DB_XREF=GI:6324065 /SEG=NC_001146:-145562,146614 /DEF=involved in pleiotropic drug resistance by controlling lipids in various cellular compartments; putative phosphatidylinositol transfer protein. /NOTE=Pdr17p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: phosphatidylinositol transporter activity [goid GO:0008526] [evidence IDA] [pmid 10848624]; go_process: phospholipid biosynthesis [goid GO:0008654] [evidence IMP] [pmid 9890948]; go_process: phospholipid transport [goid GO:0015914] [evidence IDA] [pmid 10848624]; go_process: response to drug [goid GO:0042493] [evidence IGI] [pmid 9890948] --- --- --- --- --- --- S0005208 // PDR17 SGDID:S0005208, Chr XIV from 146614-145562, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019829 // cdna:Genscan chromosome:SGD1:XIV:145562:146125:-1 // ensembl // 11 // --- /// GENEFINDER00000020407 // cdna:GeneFinder chromosome:SGD1:XIV:145562:146062:-1 // ensembl // 9 // --- /// YNL264C // cdna:known chromosome:SGD1:XIV:145562:146614:-1 gene:YNL264C // ensembl // 11 // --- --- No cerevisiae_gene -1.11084157570071 -2.37071864367564 1.5601661070689 -1.97809785233996 1.12517425219044 Max fold change below threshold 4 2.37071864367564 Max fold change at or above threshold 0.674446542381929 -0.9718473009087 -0.733459209359724 1.03085996788649 383.710803985596 176.58994127341 0.460216234307646 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770613_at SPAC11E3.15.S1 --- 2.37028286067041 --- --- --- --- 8.26501750946045 3.48693299293518 14.1721048355103 4.04173755645752 0.129638999700546 0.398925989866257 0.0952147990465164 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11E3.15 /GEN=rpl22 /DEF=60S ribosomal protein L22 --- --- --- --- --- --- D86349 // Schizosaccharomyces pombe mRNA for ribosomal protein L22 homolog, partial cds. // gb // 11 // --- /// AB178219 // Schizosaccharomyces pombe RPL22 mRNA for ribosomal protein L22, complete cds. // gb // 11 // --- /// SPAC11E3.15 // |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.40049782196829 -2.37028286067041 1.26023830384103 1.71470959611257 -2.04491691853059 Max fold change below threshold 4 2.37028286067041 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774729_at YBR241C.S1 Hypothetical protein 2.37020684201626 1922.89459228516 2313.28210449219 --- --- 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay --- 2338.76196289063 1578.17224121094 2267.61694335938 2287.80224609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR241C /GEN=THI2 /DB_XREF=GI:6319718 /SEG=NC_001134:-702546,704012 /DEF=Hypothetical ORF /NOTE=Ybr241cp; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000445 // span:20-42,87-109,116-138,142-164,205-222,298-320,333-352,367-389,394-416,420-442,447-469 // numtm:11 S0000445 // YBR241C SGDID:S0000445, Chr II from 704050-702584, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021332 // cdna:Genscan chromosome:SGD1:II:702584:704050:-1 // ensembl // 11 // --- /// GENEFINDER00000022115 // cdna:GeneFinder chromosome:SGD1:II:702584:704050:-1 // ensembl // 11 // --- /// YBR241C // cdna:known chromosome:SGD1:II:702584:704050:-1 gene:YBR241C // ensembl // 11 // --- --- No cerevisiae_gene -2.37020684201626 -1.48194341645249 1.08463846337972 -1.0313743552409 -1.02227452870277 Max fold change below threshold 4 2.37020684201626 Max fold change at or above threshold 0.610967994081597 -1.49483870882899 0.413992338564253 0.469878376183136 2118.08834838867 361.186865170684 0.170524928974495 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776989_at YGR122W.S1 Hypothetical protein 2.36732616946067 1801.51544189453 892.155975341797 --- --- 5737 // cytoplasm // inferred from direct assay --- 815.884033203125 1671.56726074219 1931.46362304688 968.427917480469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR122W /GEN=MEP1 /DB_XREF=GI:6321560 /SEG=NC_001139:+733938,735146 /DEF=Hypothetical ORF /NOTE=Ygr122wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003354 // YGR122W SGDID:S0003354, Chr VII from 733940-735148, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019435 // cdna:Genscan chromosome:SGD1:VII:733940:735148:1 // ensembl // 11 // --- /// YGR122W // cdna:known chromosome:SGD1:VII:733940:735148:1 gene:YGR122W // ensembl // 11 // --- --- No cerevisiae_gene 2.08456859815534 2.04878045496207 1.4662040102805 2.36732616946067 1.18696760577415 Max fold change below threshold 4 2.36732616946067 Max fold change at or above threshold -0.984627821178544 0.602201170917988 1.08416817619819 -0.701741525937637 1346.83570861816 539.240984252832 0.400376215749496 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770908_at YML015C.S1 TFIID subunit (40 kDa), involved in RNA polymerase II transcription initiation, similar to histone H3 with atypical histone fold motif of Spt3-like transcription factors 2.36688773518526 443.564346313477 1045.68618774414 TAF11 114 // G1-specific transcription in mitotic cell cycle // inferred from physical interaction /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement 5669 // transcription factor TFIID complex // traceable author statement /// 5669 // transcription factor TFIID complex // inferred from direct assay 16251 // general RNA polymerase II transcription factor activity // traceable author statement 993.819885253906 419.884674072266 467.244018554688 1097.55249023438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML015C /GEN=TAF11 /DB_XREF=GI:6323626 /SEG=NC_001145:-241989,243029 /DEF=TFIID subunit (40 kDa), involved in RNA polymerase II transcription initiation, similar to histone H3 with atypical histone fold motif of Spt3-like transcription factors /NOTE=Taf11p; go_component: transcription factor TFIID complex [goid GO:0005669] [evidence TAS] [pmid 9118213]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9118213]; go_process: G1-specific transcription in mitotic cell cycle [goid GO:0000114] [evidence IPI] [pmid 9118213]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 9118213] --- --- --- --- --- --- S0004477 // TAF11 SGDID:S0004477, Chr XIII from 243029-241989, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018704 // cdna:Genscan chromosome:SGD1:XIII:241989:243029:-1 // ensembl // 11 // --- /// GENEFINDER00000021892 // cdna:GeneFinder chromosome:SGD1:XIII:241989:243029:-1 // ensembl // 11 // --- /// YML015C // cdna:known chromosome:SGD1:XIII:241989:243029:-1 gene:YML015C // ensembl // 11 // --- --- No cerevisiae_gene -1.4730254270262 -2.36688773518526 -1.15365144939519 -2.12698257396223 1.10437767096396 Max fold change below threshold 4 2.36688773518526 Max fold change at or above threshold 0.710485589383385 -0.925876783482646 -0.790849261551936 1.0062404556512 744.625267028809 350.73845542929 0.471026798256257 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769757_at SPAC1687.22c.S1 --- 2.36589400574307 --- --- --- --- 2.34215569496155 1.05567622184753 1.28623759746552 1.30019342899323 0.533936023712158 0.665526986122131 0.633789002895355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.22c /DEF=RNA-binding protein --- --- --- --- --- --- SPAC1687.22c // ||SPAC222.02c|RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.69976270682989 -2.21863071886052 -2.36589400574307 -1.82093549401501 -1.80139019528436 Max fold change below threshold 0 2.36589400574307 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771179_at YEL038W.S1 Protein of unknown function, found in both the cytoplasm and nucleus 2.36519532945102 2025.34765625 972.550903320313 UTR4 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 948.131774902344 1808.17846679688 2242.51684570313 996.970031738281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL038W /GEN=UTR4 /DB_XREF=GI:6320797 /SEG=NC_001137:+80420,81145 /DEF=Product of gene unknown /NOTE=Utr4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000764 // UTR4 SGDID:S0000764, Chr V from 80420-81145, Verified ORF // sgd // 11 // --- /// S66121 // UTR4 [Saccharomyces cerevisiae, mRNA, 1063 nt]. // gb // 9 // --- /// GENSCAN00000016772 // cdna:Genscan chromosome:SGD1:V:80420:81145:1 // ensembl // 11 // --- /// GENEFINDER00000019690 // cdna:GeneFinder chromosome:SGD1:V:80462:81145:1 // ensembl // 11 // --- /// YEL038W // cdna:known chromosome:SGD1:V:80420:81145:1 gene:YEL038W // ensembl // 11 // --- --- No cerevisiae_gene 1.83472985493741 1.90709615969058 -1.04054798304706 2.36519532945102 1.05150998851501 Max fold change below threshold 4 2.36519532945102 Max fold change at or above threshold -0.869507682428127 0.488141991411289 1.17377843884538 -0.792412747828545 1498.94927978516 633.482045086292 0.422617398486685 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772692_at YJL163C.S1 Hypothetical protein 2.36352774334752 1484.68469238281 2037.65014648438 --- --- --- --- 2015.32690429688 1648.86987304688 1320.49951171875 2059.97338867188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL163C /GEN=TPK1 /DB_XREF=GI:6322298 /SEG=NC_001142:-111661,113328 /DEF=Hypothetical ORF /NOTE=Yjl163cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003699 // span:78-100,125-147,159-181,191-213,226-248,258-280,353-375,390-412,432-449,459-481,493-515,525-547 // numtm:12 S0003699 // YJL163C SGDID:S0003699, Chr X from 113328-111661, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024014 // cdna:Genscan chromosome:SGD1:X:111661:113328:-1 // ensembl // 11 // --- /// GENEFINDER00000024311 // cdna:GeneFinder chromosome:SGD1:X:111661:113328:-1 // ensembl // 11 // --- /// YJL163C // cdna:known chromosome:SGD1:X:111661:113328:-1 gene:YJL163C // ensembl // 11 // --- --- No cerevisiae_gene -2.36352774334752 -1.22224739334514 1.22862671429483 -1.52618527035557 1.02215347012924 Max fold change below threshold 4 2.36352774334752 Max fold change at or above threshold 0.733002269872766 -0.323868914224806 -1.27089719586431 0.861763840216355 1761.16741943359 346.737650495132 0.196879437280668 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774083_at YEL019C.S1 SUMO ligase involved in chromosomal organization and DNA repair; forms a complex with Smc5p, Rhc18p, and Nse1p; mutants are sensitive to methyl methanesulfonate and show increased spontaneous mutation and mitotic recombination 2.3627118624981 97.2704200744629 53.7157707214355 MMS21 6281 // DNA repair // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5635 // nuclear membrane // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 19789 // SUMO ligase activity // inferred from direct assay /// 19789 // SUMO ligase activity // inferred from mutant phenotype 47.4245491027832 105.676094055176 88.86474609375 60.0069923400879 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL019C /GEN=MMS21 /DB_XREF=GI:6320817 /SEG=NC_001137:-120498,121301 /DEF=Protein involved in DNA repair /NOTE=Mms21p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 7788712] --- --- --- --- --- --- S0000745 // MMS21 SGDID:S0000745, Chr V from 121301-120498, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019587 // cdna:GeneFinder chromosome:SGD1:V:120498:121301:-1 // ensembl // 11 // --- /// YEL019C // cdna:known chromosome:SGD1:V:120498:121301:-1 gene:YEL019C // ensembl // 11 // --- GENSCAN00000016788 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 2.0638196675515 2.22829939460561 2.3627118624981 1.8738131995974 1.26531497874729 Max fold change below threshold 4 2.3627118624981 Max fold change at or above threshold -1.05650409278147 1.13609238178713 0.503310842634936 -0.582899131640596 75.4930953979492 26.5673805590943 0.351918018714809 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776707_at YGL201C.S1 Protein involved in DNA replication; component of the Mcm2-7 hexameric complex that binds chromatin as a part of the pre-replicative complex 2.36267819227364 91.6121482849121 175.909515380859 MCM6 6268 // DNA unwinding // traceable author statement /// 6270 // DNA replication initiation // traceable author statement /// 6270 // DNA replication initiation // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5656 // pre-replicative complex // inferred from direct assay /// 5737 // cytoplasm // traceable author statement /// 5737 // cytoplasm // inferred from direct assay /// 42555 // MCM complex // inferred from direct assay 3682 // chromatin binding // traceable author statement /// 4003 // ATP-dependent DNA helicase activity // traceable author statement 183.198211669922 77.5383682250977 105.685928344727 168.620819091797 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL201C /GEN=MCM6 /DB_XREF=GI:41629691 /SEG=NC_001139:-117856,120909 /DEF=Member of the MCM/P1 family of proteins involved in DNA replication /NOTE=Mcm6p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10704410]; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 9442876]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10704410]; go_component: pre-replicative complex [goid GO:0005656] [evidence IDA] [pmid 9335335]; go_function: ATP-dependent DNA helicase activity [goid GO:0004003] [evidence TAS] [pmid 9914182]; go_function: chromatin binding [goid GO:0003682] [evidence TAS] [pmid 9442876]; go_process: DNA replication initiation [goid GO:0006270] [evidence IPI] [pmid 9335335]; go_process: DNA replication initiation [goid GO:0006270] [evidence TAS] [pmid 9442876]; go_process: DNA unwinding [goid GO:0006268] [evidence TAS] [pmid 9914182] --- --- --- --- --- --- S0003169 // MCM6 SGDID:S0003169, Chr VII from 120911-117858, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019198 // cdna:Genscan chromosome:SGD1:VII:117858:120911:-1 // ensembl // 11 // --- /// GENEFINDER00000021657 // cdna:GeneFinder chromosome:SGD1:VII:117858:120911:-1 // ensembl // 11 // --- /// YGL201C // cdna:known chromosome:SGD1:VII:117858:120911:-1 gene:YGL201C // ensembl // 11 // --- --- No cerevisiae_gene 1.29308688482617 -2.36267819227364 -1.1608306605041 -1.73342103853567 -1.08645072806928 Max fold change below threshold 4 2.36267819227364 Max fold change at or above threshold 0.981676275010165 -1.11640743964025 -0.557482349759948 0.692213514390032 133.760831832886 50.3601656630891 0.37649411246191 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779126_at YHL003C.S1 Ceramide synthase component, involved in synthesis of ceramide from C26(acyl)-coenzyme A and dihydrosphingosine or phytosphingosine, functionally equivalent to Lac1p 2.36249049378246 428.191452026367 886.209228515625 LAG1 1302 // replicative cell aging // inferred from mutant phenotype /// 1302 // replicative cell aging // inferred from expression pattern /// 46513 // ceramide biosynthesis // inferred from mutant phenotype /// 46513 // ceramide biosynthesis // inferred from direct assay 5783 // endoplasmic reticulum // inferred from direct assay 50291 // sphingosine N-acyltransferase activity // inferred from mutant phenotype /// 50291 // sphingosine N-acyltransferase activity // inferred from direct assay 807.816955566406 341.934478759766 514.448425292969 964.601501464844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL003C /GEN=LAG1 /DB_XREF=GI:6321784 /SEG=NC_001140:-100643,101878 /DEF=Ceramide synthase component, involved in synthesis of ceramide from C26(acyl)-coenzyme A and dihydrosphingosine or phytosphingosine, functionally equivalent to Lac1p /NOTE=Lag1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: sphingosine N-acyltransferase activity [goid GO:0050291] [evidence IMP] [pmid 11694577]; go_process: ceramide biosynthesis [goid GO:0046513] [evidence IMP] [pmid 11694577]; go_process: replicative cell aging [goid GO:0001302] [evidence IEP,IMP] [pmid 8195187] --- --- --- --- --- S0000995 // span:80-102,133-150,178-195,210-232,252-271,295-317,351-373 // numtm:7 S0000995 // LAG1 SGDID:S0000995, Chr VIII from 101878-100643, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016552 // cdna:Genscan chromosome:SGD1:VIII:100643:101878:-1 // ensembl // 11 // --- /// YHL003C // cdna:known chromosome:SGD1:VIII:100643:101878:-1 gene:YHL003C // ensembl // 11 // --- --- No cerevisiae_gene 1.60312356231715 -2.36249049378246 -1.19157405711839 -1.57025838908219 1.19408424744998 Max fold change below threshold 4 2.36249049378246 Max fold change at or above threshold 0.535924695117532 -1.12178035856128 -0.507940484268567 1.09379614771232 657.200340270996 281.040632513452 0.427633120819087 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773704_at SPAC17C9.12.S1 --- 2.36242579795269 --- --- --- --- 4.13883447647095 1.75194263458252 5.32962465286255 4.23905563354492 0.398925989866257 0.5 0.366210997104645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17C9.12 /DEF=MSP domain --- --- --- --- --- --- SPAC17C9.12 // |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.11692724399797 -2.36242579795269 -1.30245466832349 1.28771147605955 1.02421482609264 Max fold change below threshold 3 2.36242579795269 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776524_at YBL028C.S1 Hypothetical protein 2.36231765989996 136.40885925293 230.629699707031 --- --- 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 225.656234741211 177.294479370117 95.5232391357422 235.603164672852 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL028C /GEN=PET9 /DB_XREF=GI:6319443 /SEG=NC_001134:-167483,167803 /DEF=Hypothetical ORF /NOTE=Ybl028cp; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000124 // YBL028C SGDID:S0000124, Chr II from 167841-167521, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YBL028C // cdna:known chromosome:SGD1:II:167521:167841:-1 gene:YBL028C // ensembl // 11 // --- --- No cerevisiae_gene 2.27620654196842 -1.27277643129617 -1.28264033007986 -2.36231765989996 1.04408001375654 Max fold change below threshold 4 2.36231765989996 Max fold change at or above threshold 0.658864477453037 -0.0973326061697727 -1.37592915244845 0.814397281165181 183.51927947998 63.9539035768307 0.348486021512564 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776836_at SPBC1105.17.S1 --- 2.36211337187867 --- --- --- --- 7.7903881072998 4.11511611938477 5.40010261535645 4.66537570953369 0.171387001872063 0.334473013877869 0.194580003619194 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1105.17 /GEN=cnp1 /DEF=histone H3 variant --- --- --- --- --- --- SPBC1105.17 // |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -2.36211337187867 -1.89311501335338 -1.24375163865611 -1.44263705010828 -1.66983081156361 Max fold change below threshold 4 2.36211337187867 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769576_at YMR003W.S1 Hypothetical protein 2.36190833845208 1435.22509765625 1979.86364746094 --- --- 5739 // mitochondrion // inferred from direct assay --- 1972.34973144531 2035.38403320313 835.066162109375 1987.37756347656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR003W /GEN=CDC5 /DB_XREF=GI:6323645 /SEG=NC_001145:+273118,273714 /DEF=Hypothetical ORF /NOTE=Ymr003wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.140.2.SAP domain // All alpha proteins; LEM/SAP HeH motif; SAP domain; SAP domain // 6.99999975040555E-4 --- S0004605 // YMR003W SGDID:S0004605, Chr XIII from 273118-273714, Uncharacterized ORF // sgd // 11 // --- /// YMR003W // cdna:known chromosome:SGD1:XIII:273118:273714:1 gene:YMR003W // ensembl // 11 // --- --- No cerevisiae_gene -1.17728439596362 1.03195898818189 -1.08777976307491 -2.36190833845208 1.00761925321441 Max fold change below threshold 4 2.36190833845208 Max fold change at or above threshold 0.454778696172336 0.563034275621599 -1.49840057865524 0.480587606861309 1707.54437255859 582.273006883269 0.341000220106015 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776063_at YOR358W.S1 Subunit of the heme-activated, glucose-repressed Hap2/3/4/5 CCAAT-binding complex, a transcriptional activator and global regulator of respiratory gene expression; required for assembly and DNA binding activity of the complex 2.36159367587851 292.048400878906 453.815155029297 HAP5 6109 // regulation of carbohydrate metabolism // traceable author statement /// 6350 // transcription // traceable author statement 5634 // nucleus // inferred from curator /// 16602 // CCAAT-binding factor complex // traceable author statement 3677 // DNA binding // inferred from physical interaction /// 16563 // transcriptional activator activity // traceable author statement 463.464416503906 196.250701904297 387.846099853516 444.165893554688 0.000244141003349796 0.00585938012227416 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR358W /GEN=HAP5 /DB_XREF=GI:6324934 /SEG=NC_001147:+1010157,1010885 /DEF=Subunit of the heme-activated, glucose-repressed Hap2/3/4/5 CCAAT-binding complex, a transcriptional activator and global regulator of respiratory gene expression; required for assembly and DNA binding activity of the complex /NOTE=Hap5p; go_component: CCAAT-binding factor complex [goid GO:0016602] [evidence TAS] [pmid 9618445]; go_function: transcriptional activator activity [goid GO:0016563] [evidence TAS] [pmid 9618445]; go_process: regulation of carbohydrate metabolism [goid GO:0006109] [evidence TAS] [pmid 9618445]; go_process: transcription [goid GO:0006350] [evidence TAS] [pmid 9618445] --- --- --- --- --- --- S0005885 // HAP5 SGDID:S0005885, Chr XV from 1010157-1010885, Verified ORF // sgd // 11 // --- /// GENSCAN00000017809 // cdna:Genscan chromosome:SGD1:XV:1010157:1010885:1 // ensembl // 11 // --- /// GENEFINDER00000022891 // cdna:GeneFinder chromosome:SGD1:XV:1010157:1010885:1 // ensembl // 11 // --- /// YOR358W // cdna:known chromosome:SGD1:XV:1010157:1010885:1 gene:YOR358W // ensembl // 11 // --- --- No cerevisiae_gene -1.43921645407772 -2.36159367587851 1.38887331249858 -1.19496990347189 -1.04344890778257 Max fold change below threshold 4 2.36159367587851 Max fold change at or above threshold 0.741596811141763 -1.44728050221964 0.12217045408284 0.583513236995038 372.931777954102 122.077977129406 0.327346673965743 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1774742_at YPR157W.S1 Hypothetical protein 2.36144108342446 171.146560668945 123.988201141357 --- --- --- --- 125.01953125 153.870803833008 188.422317504883 122.956871032715 0.018554700538516 0.0107421996071935 0.0107421996071935 0.0239257998764515 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR157W /GEN=TPO3 /DB_XREF=GI:6325415 /SEG=NC_001148:+841260,842663 /DEF=Hypothetical ORF /NOTE=Ypr157wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006361 // YPR157W SGDID:S0006361, Chr XVI from 841262-842665, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020891 // cdna:GeneFinder chromosome:SGD1:XVI:841262:842665:1 // ensembl // 11 // --- /// GENSCAN00000017300 // cdna:Genscan chromosome:SGD1:XVI:841385:842665:1 // ensembl // 11 // --- /// YPR157W // cdna:known chromosome:SGD1:XVI:841262:842665:1 gene:YPR157W // ensembl // 11 // --- --- No cerevisiae_gene 2.36144108342446 1.23077412220747 -1.42327691318064 1.50714304893767 -1.01677547744962 Max fold change below threshold 4 2.36144108342446 Max fold change at or above threshold -0.735046480991469 0.205487836409415 1.3318466212099 -0.802287976627847 147.567380905151 30.6754065739321 0.207873897237823 PPPPPP Called_P_>2EXP 4 0 PPPP 0 4 0 Yes Yes 3 < x
1777693_at YGL039W.S1 Oxidoreductase, catalyzes NADPH-dependent reduction of the bicyclic diketone bicyclo[2.2.2]octane-2,6-dione (BCO2,6D) to the chiral ketoalcohol (1R,4S,6S)-6-hydroxybicyclo[2.2.2]octane-2-one (BCO2one6ol) 2.3612194333763 302.85107421875 195.936325073242 --- --- 5737 // cytoplasm // inferred from direct assay 16491 // oxidoreductase activity // inferred from direct assay /// 45552 // dihydrokaempferol 4-reductase activity // inferred from sequence similarity 189.721343994141 323.462371826172 282.239776611328 202.151306152344 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL039W /GEN=HEM2 /DB_XREF=GI:6321399 /SEG=NC_001139:+423965,425011 /DEF=Oxidoreductase, catalyzes NADPH-dependent reduction of the bicyclic diketone bicyclo[2.2.2]octane-2,6-dione (BCO2,6D) to the chiral ketoalcohol (1R,4S,6S)-6-hydroxybicyclo[2.2.2]octane-2-one (BCO2one6ol) /NOTE=Ygl039wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: dihydrokaempferol 4-reductase activity [goid GO:0045552] [evidence ISS] [pmid 10903444]; go_function: oxidoreductase activity [goid GO:0016491] [evidence IDA] [pmid 14574691]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003007 // YGL039W SGDID:S0003007, Chr VII from 423967-425013, Verified ORF // sgd // 11 // --- /// GENSCAN00000019314 // cdna:Genscan chromosome:SGD1:VII:423967:425013:1 // ensembl // 11 // --- /// GENEFINDER00000021491 // cdna:GeneFinder chromosome:SGD1:VII:423967:425013:1 // ensembl // 11 // --- /// YGL039W // cdna:known chromosome:SGD1:VII:423967:425013:1 gene:YGL039W // ensembl // 11 // --- --- No cerevisiae_gene 2.3612194333763 1.70493401014575 -1.25491873888195 1.48765431800886 1.06551694130201 Max fold change below threshold 4 2.3612194333763 Max fold change at or above threshold -0.929748679847642 1.15405616931506 0.511771260964824 -0.736078750432242 249.393699645996 64.1811673899166 0.257348792214956 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778594_at YOR360C.S1 High-affinity cyclic AMP phosphodiesterase, component of the cAMP-dependent protein kinase signaling system, protects the cell from extracellular cAMP, contains readthrough motif surrounding termination codon 2.36093310743334 870.444152832031 885.974700927734 PDE2 19933 // cAMP-mediated signaling // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4115 // cAMP-specific phosphodiesterase activity // traceable author statement 845.8642578125 873.091064453125 867.797241210938 926.085144042969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR360C /GEN=PDE2 /DB_XREF=GI:6324936 /SEG=NC_001147:-1013237,1014817 /DEF=low-Km (high-affinity) cAMP phosphodiesterase /NOTE=Pde2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: cAMP-specific phosphodiesterase activity [goid GO:0004115] [evidence TAS] [pmid 9880329]; go_process: cAMP-mediated signaling [goid GO:0019933] [evidence TAS] [pmid 9799282] --- --- --- --- --- --- S0005887 // PDE2 SGDID:S0005887, Chr XV from 1014817-1013237, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022575 // cdna:GeneFinder chromosome:SGD1:XV:1013237:1013998:-1 // ensembl // 11 // --- /// YOR360C // cdna:known chromosome:SGD1:XV:1013237:1014817:-1 gene:YOR360C // ensembl // 11 // --- GENSCAN00000017810 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 2.36093310743334 1.0321881512183 -1.25970103615579 1.02592967275288 1.09483895966704 Max fold change below threshold 4 2.36093310743334 Max fold change at or above threshold -0.950656385898535 -0.150433714419726 -0.306024395071897 1.40711449539016 878.209426879883 34.0240380721906 0.0387425106481397 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771435_at YDR043C.S1 Transcriptional repressor that recruits the Cyc8p-Tup1p complex to promoters; mediates glucose repression and negatively regulates a variety of processes including filamentous growth and alkaline pH response 2.36078796053445 1919.76477050781 1025.55114746094 NRG1 1403 // invasive growth (sensu Saccharomyces) // inferred from direct assay /// 6006 // glucose metabolism // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 9268 // response to pH // inferred from direct assay 5634 // nucleus // inferred from direct assay 3677 // DNA binding // inferred from direct assay /// 16564 // transcriptional repressor activity // inferred from direct assay 1099.23315429688 1530.02075195313 2309.5087890625 951.869140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR043C /GEN=NRG1 /DB_XREF=GI:6320248 /SEG=NC_001136:-542670,543365 /DEF=Transcriptional repressor that recruits the Cyc8p-Tup1p complex to promoters; mediates glucose repression and negatively regulates a variety of processes including filamentous growth and alkaline pH response /NOTE=Nrg1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11404322]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 10022891]; go_function: transcriptional repressor activity [goid GO:0016564] [evidence IDA] [pmid 10022891]; go_process: glucose metabolism [goid GO:0006006] [evidence IMP] [pmid 10022891]; go_process: invasive growth (sensu Saccharomyces) [goid GO:0001403] [evidence IDA] [pmid 12024013]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP] [pmid 10022891]; go_process: response to pH [goid GO:0009268] [evidence IDA] [pmid 12509465] --- --- --- --- --- --- S0002450 // NRG1 SGDID:S0002450, Chr IV from 543366-542671, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023595 // cdna:GeneFinder chromosome:SGD1:IV:542671:543366:-1 // ensembl // 11 // --- /// GENSCAN00000025130 // cdna:Genscan chromosome:SGD1:IV:542671:543324:-1 // ensembl // 11 // --- /// YDR043C // cdna:known chromosome:SGD1:IV:542671:543366:-1 gene:YDR043C // ensembl // 11 // --- --- No cerevisiae_gene 2.36078796053445 1.39189829379901 1.50122133260958 2.10101813253602 -1.15481541252101 Max fold change below threshold 4 2.36078796053445 Max fold change at or above threshold -0.61272729921769 0.0941226955738493 1.37313146455537 -0.854526860911534 1472.65795898438 609.446984268983 0.413841503759156 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771503_at YAR035C-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 2.35979863853911 92.8036994934082 50.1782131195068 --- --- --- --- 42.9169273376465 101.27530670166 84.3320922851563 57.4394989013672 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR035C-A /GEN=YAT1 /DB_XREF=GI:33438758 /SEG=NC_001133:-192333,192413 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Yar035c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028595 // YAR035C-A SGDID:S0028595, Chr I from 192411-192331, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YAR035C-A // cdna:known chromosome:SGD1:I:192331:192411:-1 gene:YAR035C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.07115745957482 2.35979863853911 -1.02726132280994 1.96500769082741 1.33838796168852 Max fold change below threshold 4 2.35979863853911 Max fold change at or above threshold -1.08886807482238 1.13498968976543 0.489336069019876 -0.535457683962934 71.4909563064575 26.2419567893679 0.367066803203436 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769442_at YDR495C.S1 Cytoplasmic protein required for the sorting and processing of soluble vacuolar proteins, acidification of the vacuolar lumen, and assembly of the vacuolar H+-ATPase 2.35964066283083 117.793529510498 224.690383911133 VPS3 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 7035 // vacuolar acidification // inferred from mutant phenotype 5737 // cytoplasm // traceable author statement --- 215.205612182617 116.012496948242 119.574562072754 234.175155639648 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR495C /GEN=VPS3 /DB_XREF=GI:6320703 /SEG=NC_001136:-1438103,1441138 /DEF=vacuolar sorting protein /NOTE=Vps3p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 2202738]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 2202738] --- --- --- --- --- --- S0002903 // VPS3 SGDID:S0002903, Chr IV from 1441140-1438105, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023617 // cdna:GeneFinder chromosome:SGD1:IV:1438105:1441140:-1 // ensembl // 11 // --- /// YDR495C // cdna:known chromosome:SGD1:IV:1438105:1441140:-1 gene:YDR495C // ensembl // 11 // --- --- No cerevisiae_gene -2.35964066283083 -1.85502094898129 -1.19322082222563 -1.79976082247057 1.08814613738295 Max fold change below threshold 4 2.35964066283083 Max fold change at or above threshold 0.706607766250381 -0.887677896099385 -0.830426449333681 1.01149657918268 171.241956710815 62.2179058476744 0.363333303605873 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775202_at SPCC306.11.S1 --- 2.35937329956863 --- --- --- --- 5.98524188995361 6.68317174911499 14.1214199066162 5.08424758911133 0.366210997104645 0.334473013877869 0.24609400331974 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC306.11 /DEF=sequence orphan --- --- --- --- --- --- SPCC306.11 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.12575460314491 1.11660846328247 -1.73304855028987 2.35937329956863 -1.17721290811484 Max fold change below threshold 4 2.35937329956863 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775269_at YBR210W.S1 Protein of unknown function, has similarity to Erv14p 2.35893776149124 401.155380249023 325.188003540039 ERV15 7120 // axial bud site selection // inferred from sequence similarity 16021 // integral to membrane // inferred from sequence similarity --- 300.364593505859 436.880676269531 365.430084228516 350.011413574219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR210W /GEN=ERV15 /DB_XREF=GI:6319687 /SEG=NC_001134:+645507,645935 /DEF=Protein of unknown function, has similarity to Erv14p /NOTE=Erv15p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 12524434]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: axial budding [goid GO:0007120] [evidence ISS] [pmid 9732282] --- --- --- --- --- S0000414 // span:7-29,59-81,112-134 // numtm:3 S0000414 // ERV15 SGDID:S0000414, Chr II from 645545-645973, Verified ORF // sgd // 10 // --- /// YBR210W // cdna:known chromosome:SGD1:II:645545:645973:1 gene:YBR210W // ensembl // 10 // --- --- No cerevisiae_gene 2.35893776149124 1.45450124853351 -1.13755334332616 1.21662170618451 1.16528852315408 Max fold change below threshold 4 2.35893776149124 Max fold change at or above threshold -1.11283402295018 1.30599673785276 0.0400148373496739 -0.233177552252259 363.171691894531 56.4388732671628 0.155405485963794 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772489_at SPCC736.08.S1 --- 2.35855680304425 --- --- --- --- 0.239887312054634 0.253166854381561 0.565787851810455 0.129800066351891 0.932372987270355 0.989257991313934 0.916259765625 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC736.08 /DEF=DNA binding (predicted) --- --- --- --- --- --- SPCC736.08 // |||DNA binding |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.81087705643329 1.05535741850283 -1.39396444450371 2.35855680304425 -1.84812934844189 Max fold change below threshold 0 2.35855680304425 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776909_at YBL004W.S1 Possible snoRNA-binding protein, based on computational analysis of large-scale protein-protein interaction data 2.35829421955115 380.937927246094 528.269653320313 UTP20 6365 // 35S primary transcript processing // inferred from mutant phenotype /// 6365 // 35S primary transcript processing // inferred from physical interaction 5730 // nucleolus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 5737 // cytoplasm // inferred from direct assay 30515 // snoRNA binding // RCA 472.322631835938 330.691497802734 431.184356689453 584.216674804688 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL004W /GEN=UTP20 /DB_XREF=GI:14270688 /SEG=NC_001134:+227601,235082 /DEF=Possible snoRNA-binding protein, based on computational analysis of large-scale protein-protein interaction data /NOTE=Utp20p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_function: snoRNA binding [goid GO:0030515] [evidence TAS] [pmid 14566057]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP] [pmid 12837249] --- --- --- --- --- --- S0000100 // UTP20 SGDID:S0000100, Chr II from 227639-235120, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021136 // cdna:Genscan chromosome:SGD1:II:227639:235120:1 // ensembl // 11 // --- /// GENEFINDER00000022205 // cdna:GeneFinder chromosome:SGD1:II:227639:235120:1 // ensembl // 11 // --- /// YBL004W // cdna:known chromosome:SGD1:II:227639:235120:1 gene:YBL004W // ensembl // 11 // --- --- No cerevisiae_gene 2.35829421955115 -1.42828779988075 1.09073772887733 -1.09540762439142 1.23690171807735 Max fold change below threshold 4 2.35829421955115 Max fold change at or above threshold 0.16890111577716 -1.18116776405325 -0.223240805731064 1.23550745400715 454.603790283203 104.9065985811 0.230764900828799 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775431_at YMR269W.S1 Nucleolar protein of unknown function 2.35735674151939 109.420680999756 230.163856506348 --- --- 5730 // nucleolus // inferred from direct assay --- 215.656829833984 91.4824752807617 127.35888671875 244.670883178711 0.000244141003349796 0.00585938012227416 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR269W /GEN=PRP24 /DB_XREF=GI:44829555 /SEG=NC_001145:+804455,805090 /DEF=protein possibly involved in protein synthesis /NOTE=Ymr269wp; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND] [pmid 11806920]; go_process: cell growth and/or maintenance [goid GO:0008151] [evidence TAS] [pmid 14656964] --- --- --- --- --- --- S0004882 // YMR269W SGDID:S0004882, Chr XIII from 804455-805090, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000021927 // cdna:GeneFinder chromosome:SGD1:XIII:804455:805090:1 // ensembl // 11 // --- /// YMR269W // cdna:known chromosome:SGD1:XIII:804455:805090:1 gene:YMR269W // ensembl // 11 // --- --- No cerevisiae_gene 1.09906224214241 -2.35735674151939 -1.07469352882277 -1.69330021163129 1.13453806850014 Max fold change below threshold 4 2.35735674151939 Max fold change at or above threshold 0.635144532973193 -1.08445466455936 -0.587628660984924 1.03693879257109 169.792268753052 72.2112191790972 0.42529156191512 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1769435_at YJL201W.S1 Non-essential protein of unknown function; promoter contains a consensus binding sequence for factor Abf1p 2.35729596729285 218.22534942627 525.363616943359 ECM25 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 30447 // filamentous growth // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 505.442260742188 214.416122436523 222.034576416016 545.284973144531 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL201W /GEN=ECM25 /DB_XREF=GI:6322260 /SEG=NC_001142:+54379,56178 /DEF=Non-essential protein of unknown function; promoter contains a consensus binding sequence for factor Abf1p /NOTE=Ecm25p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584] --- --- --- --- --- --- S0003737 // ECM25 SGDID:S0003737, Chr X from 54379-56178, Verified ORF // sgd // 10 // --- /// GENSCAN00000023987 // cdna:Genscan chromosome:SGD1:X:54379:56178:1 // ensembl // 10 // --- /// GENEFINDER00000024377 // cdna:GeneFinder chromosome:SGD1:X:55384:56178:1 // ensembl // 10 // --- /// YJL201W // cdna:known chromosome:SGD1:X:54379:56178:1 gene:YJL201W // ensembl // 10 // --- --- No cerevisiae_gene 1.14724822567257 -2.35729596729285 -1.08951492823272 -2.27641238991158 1.07882742599291 Max fold change below threshold 4 2.35729596729285 Max fold change at or above threshold 0.75041720258154 -0.883661751643439 -0.840884991507398 0.974129540569297 371.794483184814 178.097966168161 0.479022616587968 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773209_at YNL261W.S1 Subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing 2.35678922436544 73.9137268066406 206.49681854248 ORC5 6267 // pre-replicative complex formation and maintenance // traceable author statement /// 6270 // DNA replication initiation // traceable author statement /// 30466 // chromatin silencing at silent mating-type cassette // traceable author statement 5656 // pre-replicative complex // traceable author statement /// 5664 // nuclear origin of replication recognition complex // traceable author statement 3688 // DNA replication origin binding // traceable author statement /// 16887 // ATPase activity // traceable author statement 172.23779296875 73.08154296875 74.7459106445313 240.755844116211 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL261W /GEN=ORC5 /DB_XREF=GI:6324068 /SEG=NC_001146:+155099,156538 /DEF=Subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing /NOTE=Orc5p; go_component: nuclear origin of replication recognition complex [goid GO:0005664] [evidence TAS] [pmid 9442876]; go_function: ATPase activity [goid GO:0016887] [evidence TAS] [pmid 9442876]; go_function: DNA replication origin binding [goid GO:0003688] [evidence TAS] [pmid 9442876]; go_process: DNA replication initiation [goid GO:0006270] [evidence TAS] [pmid 9442876]; go_process: chromatin silencing at silent mating-type cassette (sensu Fungi) [goid GO:0030466] [evidence TAS] [pmid 9442876]; go_process: pre-replicative complex formation and maintenance [goid GO:0006267] [evidence TAS] [pmid 9442876] --- --- --- --- --- --- S0005205 // ORC5 SGDID:S0005205, Chr XIV from 155099-156538, Verified ORF // sgd // 11 // --- /// GENSCAN00000019832 // cdna:Genscan chromosome:SGD1:XIV:155099:156538:1 // ensembl // 11 // --- /// YNL261W // cdna:known chromosome:SGD1:XIV:155099:156538:1 gene:YNL261W // ensembl // 11 // --- --- No cerevisiae_gene 1.40826961839073 -2.35678922436544 1.10190324471357 -2.30431058346269 1.39781078221255 Max fold change below threshold 4 2.35678922436544 Max fold change at or above threshold 0.393034367098884 -0.823598404994232 -0.803176855579365 1.23374089347471 140.205272674561 81.5005581589011 0.581294530542209 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777989_at YLR406C.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl31Ap and has similarity to rat L31 ribosomal protein; associates with the karyopherin Sxm1p /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl31Bp and has similarity to rat L31 ribosomal protein; associates with the karyopherin Sxm1p 2.35635815564132 544.169326782227 1161.43884277344 RPL31B /// RPL31A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 1178.65893554688 500.203643798828 588.135009765625 1144.21875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR406C /GEN=RPL31B /DB_XREF=GI:6323438 /SEG=NC_001144:-931063,931753 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl31Ap and has similarity to rat L31 ribosomal protein; associates with the karyopherin Sxm1p /NOTE=Rpl31bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004398 // RPL31B SGDID:S0004398, Chr XII from 931753-931697,931347-931063, reverse complement, intron sequence removed, Verified ORF // sgd // 10 // --- /// YLR406C // cdna:known chromosome:SGD1:XII:931063:931753:-1 gene:YLR406C // ensembl // 10 // --- GENSCAN00000018124 // ensembl // 6 // Cross Hyb Matching Probes /// GENEFINDER00000024718 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 2.25098311089532 -2.35635815564132 -1.33453948443675 -2.0040618497045 -1.03009930185716 Max fold change below threshold 4 2.35635815564132 Max fold change at or above threshold 0.90904107851118 -0.983653563525599 -0.73835040610821 0.812962891122629 852.804084777832 358.45998434166 0.420330988957498 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777687_at SPBC365.16.S1 --- 2.3560440810472 --- --- --- --- 10.1132507324219 12.169020652771 10.9342021942139 6.43793630599976 0.219482004642487 0.0805663987994194 0.000244141003349796 0.111571997404099 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC365.16 /DEF=sequence orphan --- --- --- --- --- --- SPBC365.16 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.3560440810472 1.20327488902837 -1.6967109253132 1.0811758240266 -1.57088393729477 Max fold change below threshold 4 2.3560440810472 Max fold change at or above threshold AAAAPA No 3 0 AAPA 3 1 0 No No x = 1
1777529_at SPAC1093.01.S1 --- 2.35587423142903 --- --- --- --- 3.5983567237854 4.13092708587646 1.91023433208466 4.85628986358643 0.398925989866257 0.466064006090164 0.5 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1093.01 /DEF=PPR domains --- --- --- --- --- --- SPAC1093.01 // ||SPAC12B10.18|PPR domains|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.41071380000125 1.14800377032403 -2.35587423142903 -1.88372529136699 1.34958544590257 Max fold change below threshold 3 2.35587423142903 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777679_at YDR263C.S1 Mitochondrial nuclease functioning in DNA repair and replication, modulates the stability of the mitochondrial genome, induced by exposure to mutagens, also induced during meiosis at a time nearly coincident with commitment to recombination 2.35538667655074 119.784805297852 257.301246643066 DIN7 6281 // DNA repair // inferred from sequence similarity /// 6281 // DNA repair // inferred from direct assay 5739 // mitochondrion // inferred from direct assay 4518 // nuclease activity // inferred from sequence similarity 244.545822143555 135.745544433594 103.824066162109 270.056671142578 0.000244141003349796 0.00415039015933871 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR263C /GEN=DIN7 /DB_XREF=GI:6320469 /SEG=NC_001136:-994234,995526 /DEF=Mitochondrial nuclease functioning in DNA repair and replication, modulates the stability of the mitochondrial genome, induced by exposure to mutagens, also induced during meiosis at a time nearly coincident with commitment to recombination /NOTE=Din7p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 10628970]; go_function: nuclease activity [goid GO:0004518] [evidence ISS] [pmid 9079876]; go_process: DNA repair [goid GO:0006281] [evidence IDA,ISS] [pmid 9079876] --- --- --- --- --- --- S0002671 // DIN7 SGDID:S0002671, Chr IV from 995528-994236, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025307 // cdna:Genscan chromosome:SGD1:IV:994236:995528:-1 // ensembl // 11 // --- /// YDR263C // cdna:known chromosome:SGD1:IV:994236:995528:-1 gene:YDR263C // ensembl // 11 // --- --- No cerevisiae_gene -1.07386495781578 -1.80150164901497 -1.18057806396028 -2.35538667655074 1.10431930006168 Max fold change below threshold 4 2.35538667655074 Max fold change at or above threshold 0.690294591161272 -0.650785646830687 -1.04425213954956 1.00474319521897 188.543025970459 81.1288352685526 0.430293482620057 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772309_at SPBC2G2.08.S1 --- 2.35506008637409 --- --- --- --- 4.33544063568115 10.210223197937 5.35726451873779 4.18750238418579 0.398925989866257 0.219482004642487 0.0952147990465164 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G2.08 /GEN=ade9 /DEF=C-1-tetrahydrofolate synthase (predicted) --- --- --- --- --- --- SPBC2G2.08 // |ade9||C-1-tetrahydrofolate synthase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.03006991361051 2.35506008637409 -1.00163728614588 1.23569089486474 -1.03532851755597 Max fold change below threshold 4 2.35506008637409 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772307_at YML016C.S1 Serine/threonine protein phosphatase Z, isoform of Ppz2p; involved in regulation of potassium transport, which affects osmotic stability, cell cycle progression, and halotolerance 2.35492245382861 630.563415527344 1349.50592041016 PPZ1 6883 // sodium ion homeostasis // inferred from mutant phenotype /// 6883 // sodium ion homeostasis // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4722 // protein serine/threonine phosphatase activity // inferred from direct assay 1397.15246582031 593.290222167969 667.836608886719 1301.859375 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML016C /GEN=PPZ1 /DB_XREF=GI:6323625 /SEG=NC_001145:-239458,241536 /DEF=Serine/threonine protein phosphatase Z, isoform of Ppz2p; involved in regulation of potassium transport, which affects osmotic stability, cell cycle progression, and halotolerance /NOTE=Ppz1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: protein serine/threonine phosphatase activity [goid GO:0004722] [evidence IDA] [pmid 7615085]; go_process: sodium ion homeostasis [goid GO:0006883] [evidence IGI,IMP] [pmid 7768897] --- --- --- --- --- --- S0004478 // PPZ1 SGDID:S0004478, Chr XIII from 241536-239458, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018703 // cdna:Genscan chromosome:SGD1:XIII:239458:241536:-1 // ensembl // 11 // --- /// GENEFINDER00000022033 // cdna:GeneFinder chromosome:SGD1:XIII:239458:241536:-1 // ensembl // 11 // --- /// YML016C // cdna:known chromosome:SGD1:XIII:239458:241536:-1 gene:YML016C // ensembl // 11 // --- --- No cerevisiae_gene 1.18502232279959 -2.35492245382861 -1.27273656298157 -2.09205731945327 -1.07319768375161 Max fold change below threshold 4 2.35492245382861 Max fold change at or above threshold 0.973942525171732 -0.949126492209899 -0.770790156863146 0.745974123901313 990.03466796875 418.010085122607 0.42221762393456 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769631_at SPCC5E4.06.S1 --- 2.35438069462057 --- --- --- --- 4.09420394897461 5.01137685775757 3.51775741577148 1.73897278308868 0.274170011281967 0.0676269978284836 0.274170011281967 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC5E4.06 /GEN=rad18 /DEF=SMC family --- --- --- --- --- --- SPCC5E4.06 // |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.58058812154017 1.2240173963519 -1.11092108771874 -1.16386761935848 -2.35438069462057 Max fold change below threshold 3 2.35438069462057 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770427_at YBR270C.S1 Hypothetical protein 2.35424486165859 266.147872924805 626.102264404297 --- --- --- --- 586.608337402344 266.921112060547 265.374633789063 665.59619140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR270C /GEN=MRPL37 /DB_XREF=GI:6319747 /SEG=NC_001134:-742718,744355 /DEF=Hypothetical ORF /NOTE=Ybr270cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000474 // YBR270C SGDID:S0000474, Chr II from 744393-742756, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021354 // cdna:Genscan chromosome:SGD1:II:742756:744393:-1 // ensembl // 11 // --- /// GENEFINDER00000022121 // cdna:GeneFinder chromosome:SGD1:II:742756:744393:-1 // ensembl // 11 // --- /// YBR270C // cdna:known chromosome:SGD1:II:742756:744393:-1 gene:YBR270C // ensembl // 11 // --- --- No cerevisiae_gene -2.35424486165859 -2.19768430033096 1.1420362374702 -2.21049136847277 1.13465177524357 Max fold change below threshold 4 2.35424486165859 Max fold change at or above threshold 0.667989399029488 -0.852103914944082 -0.859457325072296 1.04357184098689 446.125068664551 210.307632040118 0.471409581778629 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-Scv2-r2-Ec-bioB-5_at AFFX-Scv2-r2-Ec-bioB-5 --- 2.35415775034896 --- --- --- --- 245.250030517578 289.209350585938 104.177398681641 108.980934143066 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2071-2304 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --- --- --- --- --- --- AFFX-Scv2-r2-Ec-bioB-5 // --- // affx // --- // --- --- AFFX_control No -1.59928282201715 1.17924287297982 -1.70594737268897 -2.35415775034896 -2.25039391014599 Max fold change below threshold 4 2.35415775034896 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774855_at YDR522C.S1 Protein expressed during sporulation, redundant with Sps22p for organization of the beta-glucan layer of the spore wall; S. pombe ortholog is a spore wall component 2.35324855951015 20.9020648002625 11.0650796890259 SPS2 30437 // sporulation (sensu Fungi) // inferred from expression pattern /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 13.0665225982666 30.7487754821777 11.0553541183472 9.06363677978516 0.018554700538516 0.00805663969367743 0.014160200022161 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR522C /GEN=SPS2 /DB_XREF=GI:6320730 /SEG=NC_001136:-1483783,1485291 /DEF=Middle/late gene of meiosis /NOTE=Sps2p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IEP] [pmid 3023934] --- --- --- --- --- --- S0002930 // SPS2 SGDID:S0002930, Chr IV from 1485293-1483785, reverse complement, Verified ORF // sgd // 11 // --- /// YDR522C // cdna:known chromosome:SGD1:IV:1483785:1485293:-1 gene:YDR522C // ensembl // 11 // --- --- No cerevisiae_gene -1.15136942137503 2.35324855951015 -1.34143965919164 -1.18191805150608 -1.44164234685675 Max fold change below threshold 4 2.35324855951015 Max fold change at or above threshold -0.292342358726018 1.47974661551952 -0.493898659951536 -0.693505596841962 15.9835722446442 9.97819699851095 0.624278280586149 PPPAPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1778085_at YLR223C.S1 Essential protein with a highly acidic N-terminal domain; IFH1 exhibits genetic interactions with FHL1, overexpression interferes with silencing at telomeres and HM loci; potential Cdc28p substrate 2.35310328379444 188.07935333252 442.566360473633 IFH1 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 6364 // rRNA processing // inferred from mutant phenotype /// 6364 // rRNA processing // inferred from genetic interaction /// 6383 // transcription from RNA polymerase III promoter // inferred from genetic interaction /// 6383 // transcription from RNA polymerase III promoter // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay 3700 // transcription factor activity // inferred from genetic interaction /// 3700 // transcription factor activity // inferred from physical interaction 416.718017578125 177.092956542969 199.06575012207 468.414703369141 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR223C /GEN=IFH1 /DB_XREF=GI:6323252 /SEG=NC_001144:-582235,585492 /DEF=Essential protein with a highly acidic N-terminal domain; IFH1 exhibits genetic interactions with FHL1, overexpression interferes with silencing at telomeres and HM loci; potential Cdc28p substrate /NOTE=Ifh1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 9755194]; go_process: rRNA processing [goid GO:0006364] [evidence IGI,IMP] [pmid 7785326] --- --- --- --- --- --- S0004213 // IFH1 SGDID:S0004213, Chr XII from 585492-582235, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017993 // cdna:Genscan chromosome:SGD1:XII:582235:583773:-1 // ensembl // 11 // --- /// GENEFINDER00000024890 // cdna:GeneFinder chromosome:SGD1:XII:582235:586046:-1 // ensembl // 11 // --- /// YLR223C // cdna:known chromosome:SGD1:XII:582235:585492:-1 gene:YLR223C // ensembl // 11 // --- --- No cerevisiae_gene -1.19416892936125 -2.35310328379444 -1.30645930711718 -2.09336873531779 1.12405675687235 Max fold change below threshold 4 2.35310328379444 Max fold change at or above threshold 0.681845260555695 -0.92954537277851 -0.781786396281659 1.02948650850447 315.322856903076 148.706996353415 0.471602337407225 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777705_at YGR096W.S1 Mitochondrial membrane transporter that mediates uptake of the essential cofactor thiamine pyrophosphate (ThPP) into mitochondria; expression appears to be regulated by carbon source; member of the mitochondrial carrier family 2.3530915858148 144.305709838867 310.448638916016 TPC1 6810 // transport // inferred from sequence similarity /// 6810 // transport // inferred from direct assay /// 6810 // transport // inferred from mutant phenotype 5740 // mitochondrial membrane // inferred from direct assay /// 5743 // mitochondrial inner membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity /// 5215 // transporter activity // inferred from direct assay 313.618499755859 133.279342651367 155.332077026367 307.278778076172 0.00415039015933871 0.018554700538516 0.00585938012227416 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR096W /GEN=TPC1 /DB_XREF=GI:6321533 /SEG=NC_001139:+676623,677567 /DEF=Tpc1p is a transporter that catalyzes the uptake of the essential cofactor thiamine pyrophosphate (ThPP) into mitochondria; it is located in the mitochondrial membrane and its expression appears to be regulated by carbon source /NOTE=Tpc1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence ISS] [pmid 10930523]; go_component: mitochondrial membrane [goid GO:0005740] [evidence IDA] [pmid 12411483]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 10930523]; go_function: transporter activity [goid GO:0005215] [evidence IDA] [pmid 12411483]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 10930523]; go_process: transport [goid GO:0006810] [evidence IDA,IMP] [pmid 12411483] --- --- --- --- scop // a.4.3.ARID domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; ARID-like; ARID domain // 4.80000019073486 --- S0003328 // TPC1 SGDID:S0003328, Chr VII from 676625-677569, Verified ORF // sgd // 11 // --- /// GENSCAN00000019414 // cdna:Genscan chromosome:SGD1:VII:676625:677569:1 // ensembl // 11 // --- /// GENEFINDER00000021738 // cdna:GeneFinder chromosome:SGD1:VII:676802:677569:1 // ensembl // 11 // --- /// YGR096W // cdna:known chromosome:SGD1:VII:676625:677569:1 gene:YGR096W // ensembl // 11 // --- --- No cerevisiae_gene -1.49553695776758 -2.3530915858148 -1.03446265756915 -2.01901954676511 -1.02063182403738 Max fold change below threshold 4 2.3530915858148 Max fold change at or above threshold 0.894814557916189 -0.976331350746035 -0.74751868264264 0.829035475472485 227.377174377441 96.3789922900378 0.42387276802926 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1774615_at SPBC1652.02.S1 --- 2.35265177097404 --- --- --- --- 10.0460844039917 4.70071935653687 20.9276180267334 4.27011108398438 0.432372987270355 0.828612983226776 0.219482004642487 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1652.02 /GEN=aap1 /DEF=APC amino acid transporter --- --- --- --- --- --- SPBC1652.02 // |aap1|SPBC16A3.20c|APC amino acid transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.53669807847879 -2.13713766809361 -1.36026751114328 2.08316167624652 -2.35265177097404 Max fold change below threshold 4 2.35265177097404 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772935_at YHR199C-A.S1 --- 2.35089795785424 33.5839223861694 73.9244480133057 --- --- --- --- 62.892993927002 28.5509662628174 38.6168785095215 84.9559020996094 0.000244141003349796 0.014160200022161 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR199C-A /GEN=RIX1 /DB_XREF=GI:42759857 /SEG=NC_001140:-498569,498857 /DEF=Yhr199c-ap /NOTE=go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0029704 // YHR199C-A SGDID:S0029704, Chr VIII from 498858-498786,498718-498570, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YHR199C-A // cdna:known chromosome:SGD1:VIII:498570:498858:-1 gene:YHR199C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.07203260067419 -2.20283241372846 2.35089795785424 -1.62864002359732 1.35080072985896 Max fold change below threshold 4 2.35089795785424 Max fold change at or above threshold 0.361111007853892 -0.99588032347383 -0.59813573499898 1.23290505061892 53.7541851997375 25.3074775581531 0.47080013331272 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1774663_at YDL160C.S1 Cytoplasmic DExD/H-box helicase, stimulates mRNA decapping, coordinates distinct steps in mRNA function and decay, interacts with both the decapping and deadenylase complexes, may have a role in mRNA export and translation 2.35035050676085 1227.60437011719 687.252838134766 DHH1 184 // mRNA catabolism, nonsense-mediated decay // inferred from mutant phenotype /// 290 // deadenylylation-dependent decapping // inferred from mutant phenotype 932 // cytoplasmic mRNA processing body // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3724 // RNA helicase activity // inferred from sequence similarity /// 5515 // protein binding // inferred from physical interaction 630.452270507813 973.424926757813 1481.78381347656 744.053405761719 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL160C /GEN=DHH1 /DB_XREF=GI:6320041 /SEG=NC_001136:-170411,171931 /DEF=Cytoplasmic DExD/H-box helicase, stimulates mRNA decapping, coordinates distinct steps in mRNA function and decay, interacts with both the decapping and deadenylase complexes, may have a role in mRNA export and translation /NOTE=Dhh1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12032091]; go_component: cytoplasmic mRNA processing body [goid GO:0000932] [evidence IDA] [pmid 12730603]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 11780629]; go_process: deadenylation-dependent decapping [goid GO:0000290] [evidence IMP] [pmid 11780629]; go_process: mRNA catabolism, nonsense-mediated [goid GO:0000184] [evidence IMP] [pmid 11780629] --- --- --- --- --- --- S0002319 // DHH1 SGDID:S0002319, Chr IV from 171931-170411, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023666 // cdna:GeneFinder chromosome:SGD1:IV:170411:171931:-1 // ensembl // 11 // --- /// GENSCAN00000024981 // cdna:Genscan chromosome:SGD1:IV:170411:171931:-1 // ensembl // 11 // --- /// YDL160C // cdna:known chromosome:SGD1:IV:170411:171931:-1 gene:YDL160C // ensembl // 11 // --- --- No cerevisiae_gene 1.99209551829596 1.54401050213325 1.40488202042146 2.35035050676085 1.18018990583126 Max fold change below threshold 4 2.35035050676085 Max fold change at or above threshold -0.866032820715719 0.0423680217361089 1.38881250513124 -0.565147706151626 957.428604125977 377.556514945865 0.394344302351956 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770448_at YOR074C.S1 Thymidylate synthase, required for de novo biosynthesis of pyrimidine deoxyribonucleotides; expression is induced at G1/S 2.35025878838791 46.8627738952637 91.7071342468262 CDC21 6231 // dTMP biosynthesis // traceable author statement /// 6261 // DNA-dependent DNA replication // traceable author statement 5634 // nucleus // inferred from direct assay 4799 // thymidylate synthase activity // inferred from direct assay 100.909996032715 50.789852142334 42.9356956481934 82.5042724609375 0.00195312988944352 0.00415039015933871 0.00195312988944352 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR074C /GEN=CDC21 /DB_XREF=GI:6324648 /SEG=NC_001147:-466676,467590 /DEF=Thymidylate synthase, required for de novo biosynthesis of pyrimidine deoxyribonucleotides; expression is induced at G1/S /NOTE=Cdc21p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8132557]; go_function: thymidylate synthase activity [goid GO:0004799] [evidence IDA] [pmid 6287238]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence TAS]; go_process: dTMP biosynthesis [goid GO:0006231] [evidence TAS] --- --- --- --- --- --- S0005600 // CDC21 SGDID:S0005600, Chr XV from 467590-467491,467355-466676, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000017515 // cdna:Genscan chromosome:SGD1:XV:466676:467590:-1 // ensembl // 11 // --- /// GENEFINDER00000022795 // cdna:GeneFinder chromosome:SGD1:XV:466676:467590:-1 // ensembl // 11 // --- /// YOR074C // cdna:known chromosome:SGD1:XV:466676:467590:-1 gene:YOR074C // ensembl // 11 // --- --- No cerevisiae_gene 1.70924089751805 -1.98681413267209 -1.24001256655945 -2.35025878838791 -1.22308812650268 Max fold change below threshold 4 2.35025878838791 Max fold change at or above threshold 1.16485862622988 -0.681237958538415 -0.970533446432086 0.486912778740626 69.2849540710449 27.1492533510491 0.391849193162634 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777743_at SPBC2D10.10c.S1 --- 2.3500746732781 --- --- --- --- 8.65326499938965 12.8170509338379 11.7258682250977 3.68212342262268 0.00805663969367743 0.018554700538516 0.00292969006113708 0.0561522990465164 P P P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2D10.10c /GEN=fib1 /DEF=fibrillarin --- --- --- --- --- --- SPBC2D10.10c // |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.32324392590591 1.4811809108749 1.06360470137231 1.35508021838286 -2.3500746732781 Max fold change below threshold 4 2.3500746732781 Max fold change at or above threshold PAPPPM No 3 0 PPPM 0 3 1 No No 2 < x = 3
1779241_at SPAC26H5.02c.S1 --- 2.35005603517285 --- --- --- --- 9.09911155700684 3.87187004089355 7.16646957397461 5.48476123809814 0.111571997404099 0.32666015625 0.111571997404099 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26H5.02c /DEF=AAA family ATPase --- --- --- --- --- --- SPAC26H5.02c // |||AAA family ATPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.08033899675359 -2.35005603517285 -1.79229526676827 -1.2696783908845 -1.65898042995979 Max fold change below threshold 4 2.35005603517285 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771116_at SPAC17G6.17.S1 --- 2.34939834582403 --- --- --- --- 0.950266182422638 1.37864255905151 1.58441078662872 0.906585395336151 0.601073980331421 0.725830018520355 0.466064006090164 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G6.17 /GEN=pof8 /DEF=F-box protein --- --- --- --- --- --- SPAC17G6.17 // |pof8||F-box protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.59855664045658 1.45079619221717 -2.34939834582403 1.6673336544392 -1.04818165758151 Max fold change below threshold 0 2.34939834582403 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774347_at YLR384C.S1 Subunit of RNA polymerase II elongator histone acetyltransferase complex, involved in maintaining its structural integrity; negatively regulates exocytosis independent of transcription, homolog of human familial dysautonomia (FD) protein 2.34938607492947 650.876571655273 664.097869873047 IKI3 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 8023 // transcription elongation factor complex // inferred from direct assay /// 16591 // DNA-directed RNA polymerase II, holoenzyme // inferred from direct assay 4402 // histone acetyltransferase activity // traceable author statement /// 16944 // RNA polymerase II transcription elongation factor activity // inferred from mutant phenotype /// 16944 // RNA polymerase II transcription elongation factor activity // inferred from physical interaction 572.68701171875 428.931182861328 872.821960449219 755.508728027344 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR384C /GEN=IKI3 /DB_XREF=GI:6323416 /SEG=NC_001144:-888851,892900 /DEF=Subunit of RNA polymerase II elongator complex, which is a histone acetyltransferase; involved in maintaining structural integrity of the complex; iki3 mutations confer resistance to the K. lactis toxin zymocin /NOTE=Iki3p; go_component: DNA-directed RNA polymerase II, holoenzyme [goid GO:0016591] [evidence IDA] [pmid 11296232]; go_component: transcription elongation factor complex [goid GO:0008023] [evidence IDA] [pmid 11689709]; go_function: Pol II transcription elongation factor activity [goid GO:0016944] [evidence IMP,IPI] [pmid 11689709]; go_function: histone acetyltransferase activity [goid GO:0004402] [evidence TAS] [pmid 11994165]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP] [pmid 11689709] --- --- --- --- --- --- S0004376 // IKI3 SGDID:S0004376, Chr XII from 892900-888851, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018109 // cdna:Genscan chromosome:SGD1:XII:888851:892849:-1 // ensembl // 10 // --- /// GENEFINDER00000024753 // cdna:GeneFinder chromosome:SGD1:XII:888851:892849:-1 // ensembl // 10 // --- /// YLR384C // cdna:known chromosome:SGD1:XII:888851:892900:-1 gene:YLR384C // ensembl // 10 // --- --- No cerevisiae_gene 2.34938607492947 -1.33514893437789 1.35254213407704 1.52408198996814 1.31923496179861 Max fold change below threshold 4 2.34938607492947 Max fold change at or above threshold -0.4323574753958 -1.16530268788864 1.0978933361519 0.499766827132544 657.48722076416 196.134481005053 0.298309191130889 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776638_at YPR199C.S1 Transcriptional activator of the bZIP family, required for transcription of genes involved in resistance to arsenic compounds 2.34902777833478 315.521423339844 192.878189086914 ARR1 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 46685 // response to arsenic // inferred from mutant phenotype /// 46685 // response to arsenic // inferred from expression pattern 5634 // nucleus // inferred from physical interaction 3702 // RNA polymerase II transcription factor activity // inferred from direct assay 163.604568481445 246.731170654297 384.311676025391 222.151809692383 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR199C /GEN=ARR1 /DB_XREF=GI:6325457 /SEG=NC_001148:-938142,939026 /DEF=Transcriptional activator of the bZIP family, required for transcription of genes involved in resistance to arsenic compounds /NOTE=Arr1p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 1448073]; go_function: RNA polymerase II transcription factor activity [goid GO:0003702] [evidence IDA] [pmid 1448073]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IDA] [pmid 1448073] --- --- --- --- --- --- S0006403 // ARR1 SGDID:S0006403, Chr XVI from 939028-938144, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017337 // cdna:Genscan chromosome:SGD1:XVI:938144:939028:-1 // ensembl // 11 // --- /// YPR199C // cdna:known chromosome:SGD1:XVI:938144:939028:-1 gene:YPR199C // ensembl // 11 // --- --- No cerevisiae_gene 1.33691696568612 1.50809462684582 2.2344831728516 2.34902777833478 1.35785822947589 Max fold change below threshold 4 2.34902777833478 Max fold change at or above threshold -0.96906789257069 -0.0798895736996006 1.39176449705054 -0.342807030780244 254.199806213379 93.4869872652653 0.367769703123971 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774335_at YOR310C.S1 Protein involved in pre-rRNA processing, 18S rRNA synthesis, and snoRNA synthesis; component of the small subunit processome complex, which is required for processing of pre-18S rRNA 2.34833953747531 1257.25531005859 1609.43359375 NOP58 154 // rRNA modification // traceable author statement /// 6365 // 35S primary transcript processing // traceable author statement /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 30532 // small nuclear ribonucleoprotein complex // traceable author statement --- 1622.51684570313 1239.65405273438 1274.85656738281 1596.35034179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR310C /GEN=NOP58 /DB_XREF=GI:6324886 /SEG=NC_001147:-896820,898355 /DEF=Protein involved in pre-rRNA processing, 18S rRNA synthesis, and snoRNA synthesis; component of the small subunit processome complex, which is required for processing of pre-18S rRNA /NOTE=Nop58p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence TAS] [pmid 10690410]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IPI] [pmid 12068309]; go_process: rRNA modification [goid GO:0000154] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0005837 // NOP58 SGDID:S0005837, Chr XV from 898355-896820, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022803 // cdna:GeneFinder chromosome:SGD1:XV:896820:898355:-1 // ensembl // 11 // --- /// YOR310C // cdna:known chromosome:SGD1:XV:896820:898355:-1 gene:YOR310C // ensembl // 11 // --- YOR309C // ensembl // 2 // Cross Hyb Matching Probes No cerevisiae_gene 2.34833953747531 -1.30884648190699 -1.7285040869991 -1.27270540640822 -1.01639145444527 Max fold change below threshold 4 2.34833953747531 Max fold change at or above threshold 0.926783206209034 -0.948917574862975 -0.776455310484199 0.798589679138141 1433.3444519043 204.117200798911 0.142406244729051 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779341_at SPCC1494.04c.S1 --- 2.34758821013998 --- --- --- --- 9.05491161346436 3.85711240768433 8.76898288726807 4.50403594970703 0.129638999700546 0.303710997104645 0.030273400247097 0.149657994508743 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1494.04c /DEF=prephenate dehydrogenase (NADP+) (predicted) --- --- --- --- --- --- D89213 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1181. // gb // 10 // --- /// SPCC1494.04c // |||prephenate dehydrogenase [NADP+] |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.59230599334116 -2.34758821013998 1.04661685605001 -1.03260682907837 -2.01039949826629 Max fold change below threshold 4 2.34758821013998 Max fold change at or above threshold AAAPPA No 4 0 AAPA 3 1 0 No No x = 1
1778209_at YMR286W.S1 Mitochondrial ribosomal protein of the large subunit 2.34746965723054 985.105560302734 1196.96051025391 MRPL33 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 1192.20739746094 962.169311523438 1008.04180908203 1201.71362304688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR286W /GEN=MRPL33 /DB_XREF=GI:6323942 /SEG=NC_001145:+841941,842201 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl33p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0004899 // MRPL33 SGDID:S0004899, Chr XIII from 841941-842201, Verified ORF // sgd // 10 // --- /// YMR286W // cdna:known chromosome:SGD1:XIII:841941:842201:1 gene:YMR286W // ensembl // 10 // --- --- No cerevisiae_gene -2.34746965723054 -1.23908275101112 1.29515101679066 -1.18269637897918 1.00797363412287 Max fold change below threshold 4 2.34746965723054 Max fold change at or above threshold 0.817235721944009 -1.04089648843182 -0.670361474907283 0.89402224139509 1091.03303527832 123.800709472106 0.113471091588464 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779950_at YDR242W.S1 Putative amidase 2.34665430939586 565.515899658203 267.673690795898 AMD2 --- --- 4040 // amidase activity // inferred from sequence similarity 248.870330810547 584.012634277344 547.019165039063 286.47705078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR242W /GEN=AMD2 /DB_XREF=GI:6320448 /SEG=NC_001136:+946799,948448 /DEF=Putative amidase /NOTE=Amd2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: amidase activity [goid GO:0004040] [evidence ISS] [pmid 2263500]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002650 // AMD2 SGDID:S0002650, Chr IV from 946801-948450, Verified ORF // sgd // 11 // --- /// GENSCAN00000025285 // cdna:Genscan chromosome:SGD1:IV:946990:948450:1 // ensembl // 11 // --- /// GENEFINDER00000023949 // cdna:GeneFinder chromosome:SGD1:IV:947350:948450:1 // ensembl // 11 // --- /// YDR242W // cdna:known chromosome:SGD1:IV:946801:948450:1 gene:YDR242W // ensembl // 11 // --- --- No cerevisiae_gene 1.21479860840912 2.34665430939586 1.45545147059166 2.19800875121383 1.15110969575289 Max fold change below threshold 4 2.34665430939586 Max fold change at or above threshold -0.96781274711353 0.966043440894311 0.752581730264827 -0.750812424045608 416.594795227051 173.30259899628 0.415997993690313 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771138_at YBR219C.S1 Hypothetical protein 2.34658324452875 41.8594751358032 50.5246925354004 --- --- --- --- 59.2116165161133 56.4308280944824 27.288122177124 41.8377685546875 0.00292969006113708 0.00122069998178631 0.00195312988944352 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR219C /GEN=PYC2 /DB_XREF=GI:6319696 /SEG=NC_001134:-662456,663260 /DEF=Hypothetical ORF /NOTE=Ybr219cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000423 // span:10-29,65-84,99-118 // numtm:3 S0000423 // YBR219C SGDID:S0000423, Chr II from 663298-662998,662576-662494, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YBR219C // cdna:known chromosome:SGD1:II:662494:663298:-1 gene:YBR219C // ensembl // 11 // --- --- No cerevisiae_gene -1.94707146563886 -1.04927782411725 -2.34658324452875 -2.16986775901169 -1.41526707952208 Max fold change below threshold 4 2.34658324452875 Max fold change at or above threshold 0.884054395853505 0.695232854527284 -1.28361983592846 -0.295667414452326 46.1920838356018 14.7270719331041 0.31882241956258 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779978_at YEL071W.S1 D-lactate dehydrogenase, part of the retrograde regulon which consists of genes whose expression is stimulated by damage to mitochondria and reduced in cells grown with glutamate as the sole nitrogen source, located in the cytoplasm 2.34540241215077 807.028625488281 531.602020263672 DLD3 6089 // lactate metabolism // inferred from sequence similarity 5625 // soluble fraction // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4458 // D-lactate dehydrogenase (cytochrome) activity // inferred from direct assay 459.445556640625 616.678894042969 997.378356933594 603.758483886719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL071W /GEN=DLD3 /DB_XREF=GI:6320764 /SEG=NC_001137:+16355,17845 /DEF=D-lactate dehydrogenase, part of the retrograde regulon which consists of genes whose expression is stimulated by damage to mitochondria and reduced in cells grown with glutamate as the sole nitrogen source, located in the cytoplasm /NOTE=Dld3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 10509019]; go_function: D-lactate dehydrogenase (cytochrome) activity [goid GO:0004458] [evidence IDA] [pmid 10509019]; go_process: lactate metabolism [goid GO:0006089] [evidence ISS] [pmid 10509019] --- --- --- --- --- --- S0000797 // DLD3 SGDID:S0000797, Chr V from 16355-17845, Verified ORF // sgd // 11 // --- /// GENSCAN00000016747 // cdna:Genscan chromosome:SGD1:V:16355:17845:1 // ensembl // 11 // --- /// GENEFINDER00000019761 // cdna:GeneFinder chromosome:SGD1:V:16355:17845:1 // ensembl // 11 // --- /// YEL071W // cdna:known chromosome:SGD1:V:16355:17845:1 gene:YEL071W // ensembl // 11 // --- --- No cerevisiae_gene 2.31516072414473 1.34222408973112 2.34540241215077 2.17083034652947 1.31410234610012 Max fold change below threshold 4 2.34540241215077 Max fold change at or above threshold -0.912365244102769 -0.228825948121897 1.42618594149201 -0.284994749267344 669.315322875977 230.028234407088 0.343676928564374 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772030_at YKL185W.S1 Zinc-finger inhibitor of HO transcription; mRNA is localized and translated in the distal tip of anaphase cells, resulting in accumulation of Ash1p in daughter cell nuclei and inhibition of HO expression; potential Cdc28p substrate 2.34526442171986 890.156768798828 499.239212036133 ASH1 7124 // pseudohyphal growth // inferred from mutant phenotype /// 7532 // regulation of transcription, mating-type specific // inferred from mutant phenotype /// 45892 // negative regulation of transcription, DNA-dependent // inferred from direct assay 5634 // nucleus // inferred from direct assay 16566 // specific transcriptional repressor activity // inferred from mutant phenotype /// 16566 // specific transcriptional repressor activity // inferred from sequence similarity /// 16566 // specific transcriptional repressor activity // inferred from direct assay 470.840972900391 676.066955566406 1104.24658203125 527.637451171875 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL185W /GEN=ASH1 /DB_XREF=GI:6322663 /SEG=NC_001143:+94504,96270 /DEF=Zinc-finger inhibitor of HO transcription; mRNA is localized and translated in the distal tip of anaphase cells, resulting in accumulation of Ash1p in daughter cell nuclei and inhibition of HO expression; potential Cdc28p substrate /NOTE=Ash1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9566907]; go_function: specific transcriptional repressor activity [goid GO:0016566] [evidence IMP,ISS] [pmid 8625409]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 9566907]; go_process: regulation of transcription, mating-type specific [goid GO:0007532] [evidence IMP] [pmid 8625409] --- --- --- --- --- --- S0001668 // ASH1 SGDID:S0001668, Chr XI from 94504-96270, Verified ORF // sgd // 11 // --- /// GENSCAN00000018280 // cdna:Genscan chromosome:SGD1:XI:94786:96270:1 // ensembl // 11 // --- /// GENEFINDER00000023158 // cdna:GeneFinder chromosome:SGD1:XI:95551:96270:1 // ensembl // 11 // --- /// YKL185W // cdna:known chromosome:SGD1:XI:94504:96270:1 gene:YKL185W // ensembl // 11 // --- --- No cerevisiae_gene 1.30873187617449 1.43587112098979 -1.00841918138819 2.34526442171986 1.12062773110338 Max fold change below threshold 4 2.34526442171986 Max fold change at or above threshold -0.781586388698229 -0.0650493936195244 1.42991990274066 -0.583284120422909 694.69799041748 286.413659134897 0.412285141292515 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772766_at YJL136W-A.S1 Identified by SAGE 2.34506130209996 44.3869380950928 29.1114835739136 --- --- --- --- 27.9364109039307 52.9274864196777 35.8463897705078 30.2865562438965 0.014160200022161 0.00805663969367743 0.0239257998764515 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL136W-A /GEN=GLG2 /DB_XREF=GI:33438819 /SEG=NC_001142:+156087,156170 /DEF=Identified by SAGE /NOTE=Yjl136w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028806 // YJL136W-A SGDID:S0028806, Chr X from 156087-156170, Uncharacterized ORF // sgd // 11 // --- /// YJL136W-A // cdna:known chromosome:SGD1:X:156087:156170:1 gene:YJL136W-A // ensembl // 11 // --- --- No cerevisiae_gene 2.34506130209996 1.89457001479853 -1.19922991405699 1.28314227241926 1.08412481288479 Max fold change below threshold 4 2.34506130209996 Max fold change at or above threshold -0.781002639022624 1.43374137917548 -0.0800092636960368 -0.572729476456821 36.7492108345032 11.2839566606346 0.30705303336855 PPPPPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1774392_at SPBC1289.04c.S1 --- 2.34463943546868 --- --- --- --- 6.56930303573608 6.22065448760986 7.67290115356445 2.80183935165405 0.334473013877869 0.23828125 0.149657994508743 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1289.04c /GEN=pob1 /DEF=involved in cell polarity (maintenance) (required) --- --- --- --- --- --- SPBC1289.04c // |pob1||Boi family protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.32138046010159 -1.05604692381174 1.20520153152827 1.16799318159399 -2.34463943546868 Max fold change below threshold 4 2.34463943546868 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1775035_at YEL023C.S1 Hypothetical protein 2.3443111336384 195.669227600098 435.142379760742 --- --- --- --- 381.169372558594 228.7451171875 162.593338012695 489.115386962891 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL023C /GEN=RIP1 /DB_XREF=GI:6320812 /SEG=NC_001137:-108504,110552 /DEF=Hypothetical ORF /NOTE=Yel023cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000749 // YEL023C SGDID:S0000749, Chr V from 110552-108504, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016784 // cdna:Genscan chromosome:SGD1:V:108504:110114:-1 // ensembl // 11 // --- /// GENEFINDER00000019720 // cdna:GeneFinder chromosome:SGD1:V:108504:110063:-1 // ensembl // 11 // --- /// YEL023C // cdna:known chromosome:SGD1:V:108504:110552:-1 gene:YEL023C // ensembl // 11 // --- --- No cerevisiae_gene -1.21891089493472 -1.66634976626038 -1.03202296168335 -2.3443111336384 1.28319697797258 Max fold change below threshold 4 2.3443111336384 Max fold change at or above threshold 0.445537942452377 -0.587112661465981 -1.03528066824957 1.17685538726318 315.40580368042 147.604867312066 0.467983992652285 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777988_at YGR280C.S1 Essential protein involved in rRNA and snoRNA maturation; competes with TLC1 RNA for binding to Est2p, suggesting a role in regulation of telomerase; human homolog inhibits telomerase; contains a G-patch RNA interacting domain 2.34352920112391 1399.93298339844 749.731811523438 PXR1 6365 // 35S primary transcript processing // inferred from mutant phenotype /// 16180 // snRNA processing // inferred from mutant phenotype 5730 // nucleolus // inferred from sequence similarity 3723 // RNA binding // inferred from sequence similarity 683.150451660156 1600.98303222656 1198.88293457031 816.313171386719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR280C /GEN=PXR1 /DB_XREF=GI:6321719 /SEG=NC_001139:-1050915,1051730 /DEF=PinX1-Related gene G-patch NucleOlar protein /NOTE=Pxr1p; go_component: nucleolus [goid GO:0005730] [evidence ISS] [pmid 12107183]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 12107183]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence IMP] [pmid 12107183]; go_process: snRNA processing [goid GO:0016180] [evidence IMP] [pmid 12107183] --- --- --- --- --- --- S0003512 // PXR1 SGDID:S0003512, Chr VII from 1051731-1050916, reverse complement, Verified ORF // sgd // 11 // --- /// AF432905 // Saccharomyces cerevisiae PinX1 mRNA, complete cds. // gb // 10 // --- /// GENEFINDER00000021654 // cdna:GeneFinder chromosome:SGD1:VII:1050916:1051587:-1 // ensembl // 11 // --- /// YGR280C // cdna:known chromosome:SGD1:VII:1050916:1051731:-1 gene:YGR280C // ensembl // 11 // --- --- No cerevisiae_gene 1.43984407031095 2.34352920112391 1.21263378206778 1.75493250667821 1.19492444073331 Max fold change below threshold 4 2.34352920112391 Max fold change at or above threshold -0.947676198492898 1.2730237855868 0.300140822647486 -0.625488409741384 1074.83239746094 413.307780045208 0.384532305707903 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780220_at YOL082W.S1 Protein involved in the cytoplasm-to-vacuole targeting pathway and in autophagy, recognizes cargo proteins and delivers them to the preautophagosomal structure for eventual engulfment by the autophagosome and degradation 2.34343557577385 1708.48834228516 1654.11236572266 ATG19 6623 // protein-vacuolar targeting // inferred from mutant phenotype 300 // peripheral to membrane of membrane fraction // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5773 // vacuole // inferred from direct assay 5515 // protein binding // inferred from mutant phenotype /// 5515 // protein binding // inferred from physical interaction 1648.36291503906 1911.14575195313 1505.83093261719 1659.86181640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL082W /GEN=ATG19 /DB_XREF=GI:6324490 /SEG=NC_001147:+168726,169973 /DEF=Protein involved in the cytoplasm-to-vacuole targeting pathway and in autophagy, recognizes cargo proteins and delivers them to the preautophagosomal structure for eventual engulfment by the autophagosome and degradation /NOTE=Atg19p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11382752]; go_component: peripheral to membrane of membrane fraction [goid GO:0000300] [evidence IDA] [pmid 11430817]; go_component: vacuole [goid GO:0005773] [evidence IDA] [pmid 11430817]; go_function: protein binding [goid GO:0005515] [evidence IMP,IPI] [pmid 11382752]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 11430817] --- --- --- --- --- --- S0005442 // ATG19 SGDID:S0005442, Chr XV from 168726-169973, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022823 // cdna:GeneFinder chromosome:SGD1:XV:168753:169973:1 // ensembl // 11 // --- /// GENSCAN00000017401 // cdna:Genscan chromosome:SGD1:XV:168765:169973:1 // ensembl // 11 // --- /// YOL082W // cdna:known chromosome:SGD1:XV:168726:169973:1 gene:YOL082W // ensembl // 11 // --- --- No cerevisiae_gene -2.34343557577385 1.15942049806904 -1.05289024588408 -1.09465337664046 1.00697595248126 Max fold change below threshold 4 2.34343557577385 Max fold change at or above threshold -0.195490297385558 1.36417847318834 -1.04144616117771 -0.127242014625079 1681.30035400391 168.4863106013 0.100211904553557 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771819_at YCR057C.S1 Conserved 90S pre-ribosomal component essential for proper endonucleolytic cleavage of the 35 S rRNA precursor at A0, A1, and A2 sites; contains eight WD-repeats; PWP2 deletion leads to defects in cell cycle and bud morphogenesis 2.34314634645131 134.329620361328 243.990386962891 PWP2 910 // cytokinesis // inferred from mutant phenotype /// 6365 // 35S primary transcript processing // inferred from mutant phenotype /// 6365 // 35S primary transcript processing // inferred from physical interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 5737 // cytoplasm // inferred from direct assay /// 30686 // 90S preribosome // inferred from direct assay 30515 // snoRNA binding // inferred from physical interaction 224.43798828125 132.544876098633 136.114364624023 263.542785644531 0.000732421991415322 0.00195312988944352 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR057C /GEN=PWP2 /DB_XREF=GI:6319903 /SEG=NC_001135:-220452,223223 /DEF=part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA); Eight WD-repeats with homology with G protein beta subunits flanked by nonhomologous N-terminal and C-terminal extensions /NOTE=Pwp2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 8804409]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: snoRNA binding [goid GO:0030515] [evidence IPI] [pmid 12068309]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 8804409]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IMP] [pmid 8804409]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP,IPI] [pmid 12068309] --- --- --- --- --- --- S0000653 // PWP2 SGDID:S0000653, Chr III from 223223-220452, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022498 // cdna:Genscan chromosome:SGD1:III:220452:223223:-1 // ensembl // 11 // --- /// GENEFINDER00000023320 // cdna:GeneFinder chromosome:SGD1:III:220452:223223:-1 // ensembl // 11 // --- /// YCR057C // cdna:known chromosome:SGD1:III:220452:223223:-1 gene:YCR057C // ensembl // 11 // --- --- No cerevisiae_gene 2.34314634645131 -1.69329811070354 -1.01975664946038 -1.64889274472386 1.17423430704733 Max fold change below threshold 4 2.34314634645131 Max fold change at or above threshold 0.540156608401015 -0.866858909856378 -0.81220491427197 1.13890721572733 189.160003662109 65.310660039079 0.345266751822132 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771013_at YLR271W.S1 Hypothetical protein 2.34283325329284 691.338684082031 447.848754882813 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 433.892944335938 698.785034179688 683.892333984375 461.804565429688 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR271W /GEN=DCS1 /DB_XREF=GI:6323301 /SEG=NC_001144:+682739,683563 /DEF=Hypothetical ORF /NOTE=Ylr271wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004261 // YLR271W SGDID:S0004261, Chr XII from 682739-683563, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000024617 // cdna:GeneFinder chromosome:SGD1:XII:682739:683563:1 // ensembl // 11 // --- /// YLR271W // cdna:known chromosome:SGD1:XII:682739:683563:1 gene:YLR271W // ensembl // 11 // --- --- No cerevisiae_gene -1.70463898874117 1.6105010309609 2.34283325329284 1.57617758691849 1.06432835900678 Max fold change below threshold 4 2.34283325329284 Max fold change at or above threshold -0.961250932122764 0.915140473890869 0.809646441678335 -0.76353598344644 569.593719482422 141.171020606255 0.247845114469545 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770865_at YER149C.S1 Coiled-coil polarisome protein required for polarized morphogenesis, cell fusion, and low affinity Ca2+ influx; forms polarisome complex with Bni1p, Bud6p, and Spa2p; localizes to sites of polarized growth 2.34230087446142 1161.61395263672 508.225662231445 PEA2 7015 // actin filament organization // inferred from physical interaction /// 7121 // bipolar bud site selection // traceable author statement /// 7266 // Rho protein signal transduction // inferred from physical interaction /// 30447 // filamentous growth // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction /// 31384 // regulation of initiation of mating projection growth // inferred from mutant phenotype /// 31385 // regulation of termination of mating projection growth // inferred from mutant phenotype 133 // polarisome // traceable author statement /// 30478 // actin cap // inferred from direct assay 5519 // cytoskeletal regulatory protein binding // inferred from physical interaction 501.309539794922 1174.2177734375 1149.01013183594 515.141784667969 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER149C /GEN=PEA2 /DB_XREF=GI:6320997 /SEG=NC_001137:-466203,467465 /DEF=Pea2p is localized with Spa2p to sites of polarized growth and is required for efficient mating and bipolar budding; it is required for pheromone-induced shmoo formation /NOTE=Pea2p; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IDA] [pmid 10652251]; go_component: polarisome [goid GO:0000133] [evidence TAS] [pmid 10639324]; go_function: cytoskeletal regulatory protein binding [goid GO:0005519] [evidence IPI] [pmid 10639324]; go_process: Rho protein signal transduction [goid GO:0007266] [evidence IPI] [pmid 10639324]; go_process: actin filament organization [goid GO:0007015] [evidence IPI] [pmid 10639324]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IMP,IPI] [pmid 10639324]; go_process: polar budding [goid GO:0007121] [evidence TAS] [pmid 10652251] --- --- --- --- --- --- S0000951 // PEA2 SGDID:S0000951, Chr V from 467465-466203, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016928 // cdna:Genscan chromosome:SGD1:V:466203:467465:-1 // ensembl // 11 // --- /// GENEFINDER00000019632 // cdna:GeneFinder chromosome:SGD1:V:466203:467465:-1 // ensembl // 11 // --- /// YER149C // cdna:known chromosome:SGD1:V:466203:467465:-1 gene:YER149C // ensembl // 11 // --- YER148W-A // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene 1.22774841843363 2.34230087446142 1.06785311005825 2.29201728797337 1.02759222351664 Max fold change below threshold 4 2.34230087446142 Max fold change at or above threshold -0.883931334431286 0.899001418576295 0.83221143505326 -0.847281519198269 834.919807434082 377.416496784563 0.452039217927358 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778045_at YAL033W.S1 Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends 2.342171037317 319.734588623047 286.210922241211 POP5 6364 // rRNA processing // traceable author statement /// 8033 // tRNA processing // traceable author statement 172 // ribonuclease MRP complex // inferred from direct assay /// 5655 // nucleolar ribonuclease P complex // inferred from direct assay 171 // ribonuclease MRP activity // inferred from direct assay /// 4526 // ribonuclease P activity // inferred from direct assay 263.379180908203 284.848510742188 354.620666503906 309.042663574219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL033W /GEN=POP5 /DB_XREF=GI:6319286 /SEG=NC_001133:+82709,83230 /DEF=Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends /NOTE=Pop5p; go_component: nucleolar ribonuclease P complex [goid GO:0005655] [evidence IDA] [pmid 9620854]; go_component: ribonuclease MRP complex [goid GO:0000172] [evidence IDA] [pmid 9620854]; go_function: ribonuclease MRP activity [goid GO:0000171] [evidence IDA] [pmid 9620854]; go_function: ribonuclease P activity [goid GO:0004526] [evidence IDA] [pmid 9620854]; go_process: rRNA processing [goid GO:0006364] [evidence TAS] [pmid 9620854]; go_process: tRNA processing [goid GO:0008033] [evidence TAS] [pmid 9620854] --- --- --- --- --- --- S0000031 // POP5 SGDID:S0000031, Chr I from 82707-83228, Verified ORF // sgd // 11 // --- /// GENSCAN00000020350 // cdna:Genscan chromosome:SGD1:I:82707:83228:1 // ensembl // 11 // --- /// YAL033W // cdna:known chromosome:SGD1:I:82707:83228:1 gene:YAL033W // ensembl // 11 // --- --- No cerevisiae_gene 2.342171037317 1.08151490850549 1.45183269993346 1.34642633970186 1.17337544489491 Max fold change below threshold 4 2.342171037317 Max fold change at or above threshold -1.0110748292548 -0.462826805247938 1.3188984196592 0.155003214843541 302.972755432129 39.1598854786126 0.129252167980448 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778708_at SPBC21D10.10.S1 --- 2.34165391500325 --- --- --- --- 0.767864763736725 0.776759743690491 1.79807353019714 0.678780913352966 0.633789002895355 0.828612983226776 0.423828125 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21D10.10 /DEF=bromodomain protein --- --- --- --- --- --- SPBC21D10.10 // |||bromodomain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.97383880449652 1.01158404496969 1.78736287838053 2.34165391500325 -1.13124094775104 Max fold change below threshold 0 2.34165391500325 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771055_at YNL301C.S1 Protein component of the large (60S) ribosomal subunit, identical to Rpl18Ap and has similarity to rat L18 ribosomal protein /// Protein component of the large (60S) ribosomal subunit, identical to Rpl18Bp and has similarity to rat L18 ribosomal protein; intron of RPL18A pre-mRNA forms stem-loop structures that are a target for Rnt1p cleavage leading to degradation 2.34148826399765 338.188613891602 539.565826416016 RPL18B /// RPL18A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 539.167175292969 285.572296142578 390.804931640625 539.964477539063 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL301C /GEN=RPL18B /DB_XREF=GI:6324028 /SEG=NC_001146:-63569,64561 /DEF=Protein component of the large (60S) ribosomal subunit, identical to Rpl18Ap and has similarity to rat L18 ribosomal protein /NOTE=Rpl18bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0005245 // RPL18B SGDID:S0005245, Chr XIV from 64561-64450,64017-63569, reverse complement, intron sequence removed, Verified ORF // sgd // 10 // --- /// YNL301C // cdna:known chromosome:SGD1:XIV:63569:64561:-1 gene:YNL301C // ensembl // 10 // --- --- No cerevisiae_gene 2.34148826399765 -1.88802339224032 -1.31998832981497 -1.37963247554095 1.00147876629481 Max fold change below threshold 4 2.34148826399765 Max fold change at or above threshold 0.809122836850286 -1.23683887231743 -0.387839304561466 0.815555340028608 438.877220153809 123.948985953189 0.2824229198083 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770896_at YPL115C.S1 Rho GTPase activating protein (RhoGAP) involved in control of the cytoskeleton organization; targets the essential Rho-GTPase Cdc42p, which controls establishment and maintenance of cell polarity, including bud-site assembly 2.34023874297528 310.116119384766 736.665710449219 BEM3 1403 // invasive growth (sensu Saccharomyces) // inferred from physical interaction /// 7118 // budding cell apical bud growth // inferred from physical interaction /// 7119 // budding cell isotropic bud growth // inferred from physical interaction /// 7124 // pseudohyphal growth // inferred from physical interaction /// 7264 // small GTPase mediated signal transduction // inferred from physical interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction 5622 // intracellular // traceable author statement 4871 // signal transducer activity // inferred from physical interaction /// 5100 // Rho GTPase activator activity // inferred from direct assay 692.684814453125 295.988952636719 324.243286132813 780.646606445313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL115C /GEN=BEM3 /DB_XREF=GI:6325142 /SEG=NC_001148:-332099,335485 /DEF=Gtpase-activating protein activity toward the essential bud-site assembly GTPase Cdc42 /NOTE=Bem3p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 9891811]; go_function: Rho GTPase activator activity [goid GO:0005100] [evidence IDA] [pmid 9891811]; go_function: signal transducer activity [goid GO:0004871] [evidence IPI] [pmid 9891811]; go_process: apical bud growth [goid GO:0007118] [evidence IPI] [pmid 10066831]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IPI] [pmid 9891811]; go_process: invasive growth (sensu Saccharomyces) [goid GO:0001403] [evidence IPI] [pmid 10066831]; go_process: isotropic bud growth [goid GO:0007119] [evidence IPI] [pmid 10066831]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IPI] [pmid 10066831]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence IPI] [pmid 9891811] --- --- --- --- --- --- S0006036 // BEM3 SGDID:S0006036, Chr XVI from 335485-332099, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017102 // cdna:Genscan chromosome:SGD1:XVI:332099:335485:-1 // ensembl // 11 // --- /// YPL115C // cdna:known chromosome:SGD1:XVI:332099:335485:-1 gene:YPL115C // ensembl // 11 // --- --- No cerevisiae_gene -1.6271373749533 -2.34023874297528 1.13633942106352 -2.13631197337852 1.12698674802281 Max fold change below threshold 4 2.34023874297528 Max fold change at or above threshold 0.679512891672563 -0.912747390097796 -0.799339973121652 1.03257447154689 523.390914916992 249.140084920877 0.47601148170558 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770687_at YLR364W.S1 Hypothetical protein 2.34007788852687 133.691299438477 113.91130065918 --- --- 5737 // cytoplasm // inferred from direct assay --- 85.4774780273438 118.182312011719 149.200286865234 142.345123291016 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR364W /GEN=NMD4 /DB_XREF=GI:6323396 /SEG=NC_001144:+854061,854390 /DEF=Hypothetical ORF /NOTE=Ylr364wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004356 // YLR364W SGDID:S0004356, Chr XII from 854061-854390, Uncharacterized ORF // sgd // 11 // --- /// YLR364W // cdna:known chromosome:SGD1:XII:854061:854390:1 gene:YLR364W // ensembl // 11 // --- --- No cerevisiae_gene 2.34007788852687 1.38261346426146 1.26634459460907 1.74549238359028 1.66529390637239 Max fold change below threshold 4 2.34007788852687 Max fold change at or above threshold -1.33043424694956 -0.195066507551864 0.881740915074272 0.643759839427149 123.801300048828 28.8054987379902 0.232675252413578 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777277_at YDR267C.S1 Essential protein involved in assembly of cytosolic and nuclear iron-sulfur proteins 2.33908124865573 311.228561401367 468.775588989258 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 493.512664794922 210.985687255859 411.471435546875 444.038513183594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR267C /GEN=PEX10 /DB_XREF=GI:6320473 /SEG=NC_001136:-1002502,1003494 /DEF=Protein required for cell viability /NOTE=Ydr267cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14690591]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002675 // YDR267C SGDID:S0002675, Chr IV from 1003496-1002504, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023743 // cdna:GeneFinder chromosome:SGD1:IV:1002504:1003496:-1 // ensembl // 11 // --- /// GENSCAN00000025310 // cdna:Genscan chromosome:SGD1:IV:1002504:1003496:-1 // ensembl // 11 // --- /// YDR267C // cdna:known chromosome:SGD1:IV:1002504:1003496:-1 gene:YDR267C // ensembl // 11 // --- --- No cerevisiae_gene -1.0960404836441 -2.33908124865573 1.10003059099994 -1.19938499288294 -1.11141860478862 Max fold change below threshold 4 2.33908124865573 Max fold change at or above threshold 0.834634549249677 -1.44345871117243 0.173113398049593 0.435710763873162 390.002075195313 124.019056834711 0.317995889567005 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778267_at YOR180C.S1 Peroxisomal delta(3,5)-delta(2,4)-dienoyl-CoA isomerase, involved in fatty acid metabolism, contains peroxisome targeting signals at amino and carboxy termini 2.33786445590218 790.652435302734 429.515884399414 DCI1 6635 // fatty acid beta-oxidation // traceable author statement 5782 // peroxisomal matrix // inferred from direct assay 4165 // dodecenoyl-CoA delta-isomerase activity // inferred from direct assay 395.433624267578 924.47021484375 656.834655761719 463.59814453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR180C /GEN=DCI1 /DB_XREF=GI:6324754 /SEG=NC_001147:-674352,675167 /DEF=Peroxisomal delta(3,5)-delta(2,4)-dienoyl-CoA isomerase, involved in fatty acid metabolism, contains peroxisome targeting signals at amino and carboxy termini /NOTE=Dci1p; go_component: peroxisomal matrix [goid GO:0005782] [evidence IDA] [pmid 10381339]; go_function: dodecenoyl-CoA delta-isomerase activity [goid GO:0004165] [evidence IDA] [pmid 10455114]; go_process: fatty acid beta-oxidation [goid GO:0006635] [evidence TAS] [pmid 10455114] --- --- --- --- --- --- S0005706 // DCI1 SGDID:S0005706, Chr XV from 675167-674352, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022601 // cdna:GeneFinder chromosome:SGD1:XV:674352:675167:-1 // ensembl // 11 // --- /// YOR180C // cdna:known chromosome:SGD1:XV:674352:675167:-1 gene:YOR180C // ensembl // 11 // --- --- No cerevisiae_gene -1.10685627072702 2.33786445590218 1.96119889463834 1.6610490748689 1.17237917081514 Max fold change below threshold 4 2.33786445590218 Max fold change at or above threshold -0.905563569069945 1.3263258684684 0.197230096899363 -0.617992396297817 610.084159851074 237.035303666149 0.38852886087718 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776727_at YOL029C.S1 Hypothetical protein 2.33757779728102 590.966735839844 1023.64526367188 --- --- --- --- 1075.44836425781 622.998596191406 558.934875488281 971.842163085938 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL029C /GEN=GAS5 /DB_XREF=GI:6324544 /SEG=NC_001147:-269815,270420 /DEF=Hypothetical ORF /NOTE=Yol029cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005389 // YOL029C SGDID:S0005389, Chr XV from 270420-269815, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000017444 // cdna:Genscan chromosome:SGD1:XV:269815:270381:-1 // ensembl // 9 // --- /// YOL029C // cdna:known chromosome:SGD1:XV:269815:270420:-1 gene:YOL029C // ensembl // 10 // --- --- No cerevisiae_gene -2.33757779728102 -1.72624524490485 -1.28029883467613 -1.9241031673293 -1.10660805335188 Max fold change below threshold 4 2.33757779728102 Max fold change at or above threshold 1.05274035204347 -0.723600096810691 -0.975117472707223 0.64597721747444 807.305999755859 254.708926072286 0.315504810009232 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Ec-bioC-3_at AFFX-r2-Ec-bioC-3 --- 2.33740607912032 --- --- --- --- 1094.29223632813 1268.22583007813 497.743316650391 468.165222167969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4608-4883 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --- --- --- --- --- --- J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioC protein corresponding to nucleotides 4609-4883 of J04423 /LEN=777 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// AFFX-r2-Ec-bioC-3 // E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4608-4883 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// AFFX-r2-Ec-bioC-3 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioC-3 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioC-3 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioC-3 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioC-3 // --- // gb // --- // --- /// AFFX-r2-Ec-bioC-3 // E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4608-4883 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-3 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioC-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-3 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioC-3 // --- // affx // --- // --- 1037747 // gb // 7 // Cross Hyb Matching Probes /// 26245917 // gb // 7 // Cross Hyb Matching Probes AFFX_control No -1.72716061204441 1.15894620100169 -1.8546765793042 -2.19850714157704 -2.33740607912032 Max fold change below threshold 4 2.33740607912032 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-25srRnac_at AFFX-25srRnac Identified by fungal homology and RT-PCR 2.33728939567505 52.0591049194336 60.2119903564453 --- --- --- --- 79.2966156005859 70.1914672851563 33.9267425537109 41.1273651123047 3.99011114495806E-5 0.000107084211776964 0.00132121064234525 2.97848891932517E-5 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /GEN=25S rRNA /DB_XREF=gb:J01355.1 /NOTE=SIF corresponding to nucleotides 1633-1928 of gb:J01355.1, not 100% identical /DEF=S.cerevisiae 25S rRNA gene and flanks. --- --- --- --- --- --- D83562 // Saccharomyces cerevisiae 26S ribosomal rRNA, partial sequence. // gb // 13 // --- /// D25212 // Yeast (strain IFO 2376) 26S rRNA, partial sequence. // gb // 13 // --- /// L10682 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 25S ribosomal RNA, partial. // gb // 11 // --- /// L19652 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 12 // --- /// L21852 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 11 // --- S0028561 // sgd // 8 // Cross Hyb Matching Probes /// YLR154C-G // ensembl // 8 // Cross Hyb Matching Probes AFFX_control cerevisiae_gene -1.35738488894844 -1.12971873459262 1.25931879395388 -2.33728939567505 -1.92807429758882 Max fold change below threshold 4 2.33728939567505 Max fold change at or above threshold 1.05260166145711 0.638799747828099 -1.00932414551599 -0.682077263769214 56.1355476379395 22.0036399435136 0.391973372833766 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 No No 3 < x
1777143_s_at YDL246C.S1 Sorbitol dehydrogenase; expression is induced in the presence of sorbitol /// Protein of unknown function, computational analysis of large-scale protein-protein interaction data suggests a possible role in fructose or mannose metabolism 2.33649165122139 0.434307500720024 0.441693842411041 SOR1 /// SOR2 6000 // fructose metabolism // non-traceable author statement /// 6013 // mannose metabolism // non-traceable author statement /// 19318 // hexose metabolism // RCA --- 3939 // L-iditol 2-dehydrogenase activity // inferred from sequence similarity /// 16616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from sequence similarity 0.618622243404388 0.530256330966949 0.338358670473099 0.264765441417694 0.919434010982513 0.994140982627869 0.997070014476776 0.995850026607513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL246C /GEN=SOR2 /DB_XREF=GI:6319955 /SEG=NC_001136:-8683,9756 /DEF=Protein of unknown function, computational analysis of large-scale protein-protein interaction data suggests a possible role in fructose or mannose metabolism /NOTE=Sor2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [goid GO:0016616] [evidence ISS] [pmid 10938079]; go_process: hexose metabolism [goid GO:0019318] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0002405 // SOR2 SGDID:S0002405, Chr IV from 9756-8683, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0003920 // SOR1 SGDID:S0003920, Chr X from 735959-737032, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023902 // cdna:GeneFinder chromosome:SGD1:IV:8683:9756:-1 // ensembl // 11 // --- /// GENSCAN00000024918 // cdna:Genscan chromosome:SGD1:IV:8683:9756:-1 // ensembl // 11 // --- /// GENSCAN00000024261 // cdna:Genscan chromosome:SGD1:X:735959:737032:1 // ensembl // 11 // --- /// GENEFINDER00000024422 // cdna:GeneFinder chromosome:SGD1:X:735959:737032:1 // ensembl // 11 // --- /// YDL246C // cdna:known chromosome:SGD1:IV:8683:9756:-1 gene:YDL246C // ensembl // 11 // --- /// YJR159W // cdna:known chromosome:SGD1:X:735959:737032:1 gene:YJR159W // ensembl // 11 // --- --- No cerevisiae_gene -2.23354313502565 -1.16664753870321 -1.82748374700797 -1.82830321013917 -2.33649165122139 Max fold change below threshold 0 2.33649165122139 Max fold change at or above threshold 1.0987245343523 0.561192970392371 -0.606124230553645 -1.05379327419103 0.438000671565533 0.164392043857773 0.375323725578301 AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772472_at SPAP11E10.01.S1 --- 2.33600939173576 --- --- --- --- 10.1581830978394 14.8849029541016 7.11182928085327 4.34851980209351 0.0805663987994194 0.171387001872063 0.129638999700546 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP11E10.01 /DEF=ornithine cyclodeaminase (predicted) --- --- --- --- --- --- SPAP11E10.01 // |||ornithine cyclodeaminase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.76198972858999 1.46531154348533 1.48294143232766 -1.42835024530012 -2.33600939173576 Max fold change below threshold 4 2.33600939173576 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773031_at SPAC1F8.08.S1 --- 2.33561098766123 --- --- --- --- 4.08612394332886 5.16285181045532 1.74948823451996 4.02669906616211 0.274170011281967 0.388916015625 0.567627012729645 0.144775390625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F8.08 /DEF=sequence orphan --- --- --- --- --- --- SPAC1F8.08 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.10868021523072 1.26350837176253 1.09410538154976 -2.33561098766123 -1.01475771498946 Max fold change below threshold 3 2.33561098766123 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772443_at YOR036W.S1 Target membrane receptor (t-SNARE) for vesicular intermediates traveling between the Golgi apparatus and the vacuole; controls entry of biosynthetic, endocytic, and retrograde traffic into the prevacuolar compartment; syntaxin 2.3348326808042 2289.86291503906 1102.00888061523 PEP12 6896 // Golgi to vacuole transport // inferred from mutant phenotype 5768 // endosome // inferred from mutant phenotype /// 5794 // Golgi apparatus // inferred from mutant phenotype 5486 // t-SNARE activity // inferred from mutant phenotype /// 5486 // t-SNARE activity // inferred from sequence similarity /// 5486 // t-SNARE activity // inferred from direct assay 986.418151855469 2303.12133789063 2276.6044921875 1217.599609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR036W /GEN=PEP12 /DB_XREF=GI:6324610 /SEG=NC_001147:+400347,401213 /DEF=integral membrane protein; c-terminal TMD; located in endosome /NOTE=Pep12p; go_component: Golgi apparatus [goid GO:0005794] [evidence IMP] [pmid 8730101]; go_component: endosome [goid GO:0005768] [evidence IMP] [pmid 8730101]; go_function: t-SNARE activity [goid GO:0005486] [evidence IMP,ISS] [pmid 8730101]; go_process: Golgi to vacuole transport [goid GO:0006896] [evidence IMP] [pmid 8730101] --- --- --- --- --- S0005562 // span:267-286 // numtm:1 S0005562 // PEP12 SGDID:S0005562, Chr XV from 400347-401213, Verified ORF // sgd // 11 // --- /// GENSCAN00000017491 // cdna:Genscan chromosome:SGD1:XV:400347:401213:1 // ensembl // 11 // --- /// GENEFINDER00000022792 // cdna:GeneFinder chromosome:SGD1:XV:400347:401213:1 // ensembl // 11 // --- /// YOR036W // cdna:known chromosome:SGD1:XV:400347:401213:1 gene:YOR036W // ensembl // 11 // --- --- No cerevisiae_gene 1.25989762691834 2.3348326808042 1.37525170196408 2.30795072850714 1.23436456140297 Max fold change below threshold 4 2.3348326808042 Max fold change at or above threshold -1.02478720261666 0.876984222205844 0.838684793777724 -0.690881813366906 1695.93589782715 692.356173223102 0.408244305760705 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777193_at SPBC146.10.S1 --- 2.33429016982008 --- --- --- --- 2.20607852935791 3.99327540397644 0.945074677467346 1.56432735919952 0.633789002895355 0.601073980331421 0.805419981479645 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC146.10 /DEF=fasciclin --- --- --- --- --- --- SPBC146.10 // |||fasciclin domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.30537825501104 1.81012386949738 1.64690244120695 -2.33429016982008 -1.41024096803292 Max fold change below threshold 1 2.33429016982008 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772231_at YHR201C.S1 Exopolyphosphatase, hydrolyzes inorganic polyphosphate (poly P) into Pi residues; located in the cytosol, plasma membrane, and mitochondrial matrix 2.33422011863111 231.869705200195 553.215423583984 PPX1 6797 // polyphosphate metabolism // inferred from direct assay 5737 // cytoplasm // inferred from direct assay /// 5759 // mitochondrial matrix // traceable author statement /// 5829 // cytosol // traceable author statement /// 5886 // plasma membrane // traceable author statement 4309 // exopolyphosphatase activity // inferred from mutant phenotype /// 4309 // exopolyphosphatase activity // inferred from direct assay 529.382751464844 236.947280883789 226.792129516602 577.048095703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR201C /GEN=PPX1 /DB_XREF=GI:6321995 /SEG=NC_001140:-499948,501141 /DEF=Exopolyphosphatase, hydrolyzes inorganic polyphosphate (poly P) into Pi residues; located in the cytosol, plasma membrane, and mitochondrial matrix /NOTE=Ppx1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 7860598]; go_function: exopolyphosphatase activity [goid GO:0004309] [evidence IDA,IMP] [pmid 7860598]; go_process: polyphosphate metabolism [goid GO:0006797] [evidence IDA] [pmid 8157625] --- --- --- --- --- --- S0001244 // PPX1 SGDID:S0001244, Chr VIII from 501142-499949, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016723 // cdna:Genscan chromosome:SGD1:VIII:499949:501142:-1 // ensembl // 11 // --- /// GENEFINDER00000020102 // cdna:GeneFinder chromosome:SGD1:VIII:499949:501142:-1 // ensembl // 11 // --- /// YHR201C // cdna:known chromosome:SGD1:VIII:499949:501142:-1 gene:YHR201C // ensembl // 11 // --- --- No cerevisiae_gene 1.24603688031704 -2.23417947439743 -1.01932537529816 -2.33422011863111 1.09003947353099 Max fold change below threshold 4 2.33422011863111 Max fold change at or above threshold 0.733362605580913 -0.833876107382699 -0.888300238378294 0.988813740180079 392.54256439209 186.592806929881 0.475344138077988 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775476_at YOL135C.S1 Member of RNA Polymerase II transcriptional regulation mediator; Stoichiometric member of mediator complex 2.33321213494889 239.072204589844 451.852386474609 MED7 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from direct assay 452.374572753906 193.884887695313 284.259521484375 451.330200195313 0.000244141003349796 0.00292969006113708 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL135C /GEN=MED7 /DB_XREF=GI:6324437 /SEG=NC_001147:-69375,70043 /DEF=Member of RNA Polymerase II transcriptional regulation mediator /NOTE=Med7p; go_component: mediator complex [goid GO:0000119] [evidence IDA] [pmid 9420330]; go_function: RNA polymerase II transcription mediator activity [goid GO:0016455] [evidence IDA] [pmid 9420330]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IDA] [pmid 9420330] --- --- --- --- --- --- S0005495 // MED7 SGDID:S0005495, Chr XV from 70043-69375, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017362 // cdna:Genscan chromosome:SGD1:XV:69375:70043:-1 // ensembl // 11 // --- /// GENEFINDER00000022603 // cdna:GeneFinder chromosome:SGD1:XV:69375:70043:-1 // ensembl // 11 // --- /// YOL135C // cdna:known chromosome:SGD1:XV:69375:70043:-1 gene:YOL135C // ensembl // 11 // --- --- No cerevisiae_gene 1.18949108201149 -2.33321213494889 -1.40120930007452 -1.59141396703847 -1.00231398775917 Max fold change below threshold 4 2.33321213494889 Max fold change at or above threshold 0.833492666201839 -1.18170392659389 -0.477139432867194 0.825350693259242 345.462295532227 128.270207473895 0.371300165409597 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772027_at YKR016W.S1 The authentic, non-tagged protein was localized to the mitochondria 2.33312943428068 3292.71557617188 1532.59686279297 --- --- 5739 // mitochondrion // inferred from direct assay --- 1456.78833007813 3398.87573242188 3186.55541992188 1608.40539550781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR016W /GEN=YPT52 /DB_XREF=GI:6322868 /SEG=NC_001143:+469360,470982 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ykr016wp --- --- --- --- --- S0001724 // span:38-57 // numtm:1 S0001724 // FMP13 SGDID:S0001724, Chr XI from 469360-470982, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000018430 // cdna:Genscan chromosome:SGD1:XI:469903:470982:1 // ensembl // 10 // --- /// YKR016W // cdna:known chromosome:SGD1:XI:469360:470982:1 gene:YKR016W // ensembl // 10 // --- --- No cerevisiae_gene -1.30471141019135 2.33312943428068 1.35869309645291 2.18738395560252 1.10407624930765 Max fold change below threshold 4 2.33312943428068 Max fold change at or above threshold -0.935500530444975 0.965205430287045 0.75740917813783 -0.787114077979899 2412.65621948242 1021.77161668699 0.423504852633412 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778921_at YDR365C.S1 Nucleolar protein involved in pre-rRNA processing; depletion causes severely decreased 18S rRNA levels 2.33269390507755 28.9519968032837 54.7982063293457 ESF1 6364 // rRNA processing // inferred from physical interaction /// 6364 // rRNA processing // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay 3723 // RNA binding // inferred from direct assay 50.5402183532715 30.6429252624512 27.2610683441162 59.0561943054199 0.00122069998178631 0.00805663969367743 0.0239257998764515 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR365C /GEN=ESF1 /DB_XREF=GI:6320573 /SEG=NC_001136:-1204485,1206371 /DEF=Nucleolar protein involved in pre-rRNA processing; depletion causes severely decreased 18S rRNA levels /NOTE=Esf1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 15056729]; go_process: rRNA processing [goid GO:0006364] [evidence IMP,IPI] [pmid 15056729] --- --- --- --- --- --- S0002773 // ESF1 SGDID:S0002773, Chr IV from 1206373-1204487, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023764 // cdna:GeneFinder chromosome:SGD1:IV:1204487:1206373:-1 // ensembl // 11 // --- /// GENSCAN00000025388 // cdna:Genscan chromosome:SGD1:IV:1204487:1206373:-1 // ensembl // 11 // --- /// YDR365C // cdna:known chromosome:SGD1:IV:1204487:1206373:-1 gene:YDR365C // ensembl // 11 // --- --- No cerevisiae_gene 2.33269390507755 -1.64932746858871 -1.23762127905074 -1.8539338853233 1.16849899406098 Max fold change below threshold 4 2.33269390507755 Max fold change at or above threshold 0.563253701257429 -0.730118823770525 -0.949947762399776 1.11681288491287 41.8751015663147 15.3840387868068 0.367379139664752 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1776228_at YPL222W.S1 The authentic, non-tagged protein was localized to the mitochondria. 2.33248891522159 3962.90832519531 2846.48217773438 --- --- 5739 // mitochondrion // inferred from direct assay --- 2881.94580078125 4188.763671875 3737.05297851563 2811.0185546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL222W /GEN=GRE1 /DB_XREF=GI:6325034 /SEG=NC_001148:+130161,132227 /DEF=The authentic, non-tagged protein was localized to the mitochondria. /NOTE=Ypl222wp --- --- --- --- --- --- S0006143 // FMP40 SGDID:S0006143, Chr XVI from 130161-132227, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017016 // cdna:Genscan chromosome:SGD1:XVI:130161:132227:1 // ensembl // 11 // --- /// GENEFINDER00000020748 // cdna:GeneFinder chromosome:SGD1:XVI:130704:132227:1 // ensembl // 11 // --- /// YPL222W // cdna:known chromosome:SGD1:XVI:130161:132227:1 gene:YPL222W // ensembl // 11 // --- YPL222C-A // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene -2.33248891522159 1.45344984306766 1.09896513602921 1.29671174853551 -1.02523186692435 Max fold change below threshold 4 2.33248891522159 Max fold change at or above threshold -0.77899657154883 1.16841177080244 0.49527652216899 -0.884691721422596 3404.69525146484 671.054879797794 0.197096900084986 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769774_at YGL114W.S1 Putative member of the oligopeptide transporter (OPT) family of membrane transporters 2.33230079470398 429.347442626953 841.883270263672 --- 6810 // transport // inferred from curator 16020 // membrane // inferred from sequence similarity 15198 // oligopeptide transporter activity // inferred from sequence similarity 844.822082519531 362.226898193359 496.467987060547 838.944458007813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL114W /GEN=SNF4 /DB_XREF=GI:6321324 /SEG=NC_001139:+293461,295638 /DEF=Putative member of the oligopeptide transporter (OPT) family of membrane transporters /NOTE=Ygl114wp; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 11788967]; go_function: oligopeptide transporter activity [goid GO:0015198] [evidence ISS] [pmid 11788967]; go_process: transport [goid GO:0006810] [evidence IC] [pmid 11788967] --- --- --- --- --- S0003082 // span:26-48,53-75,88-110,137-155,255-277,305-327,353-375,447-469,474-496,620-637,644-663,696-718 // numtm:12 S0003082 // YGL114W SGDID:S0003082, Chr VII from 293463-295640, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019265 // cdna:Genscan chromosome:SGD1:VII:293463:295640:1 // ensembl // 11 // --- /// GENEFINDER00000021449 // cdna:GeneFinder chromosome:SGD1:VII:293628:295640:1 // ensembl // 11 // --- /// YGL114W // cdna:known chromosome:SGD1:VII:293463:295640:1 gene:YGL114W // ensembl // 11 // --- --- No cerevisiae_gene -1.2563128482493 -2.33230079470398 1.14988868672003 -1.70166476900453 -1.00700597573012 Max fold change below threshold 4 2.33230079470398 Max fold change at or above threshold 0.85595515127963 -1.11855036179926 -0.56931203813039 0.831907248650016 635.615356445313 244.4131865571 0.3845300213072 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775034_at SPBC31E1.06.S1 --- 2.33210857815747 --- --- --- --- 3.12181401252747 4.27233648300171 3.40335464477539 1.33862292766571 0.696289002895355 0.432372987270355 0.466064006090164 0.71826171875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31E1.06 /DEF=GTP binding --- --- --- --- --- --- SPBC31E1.06 // ||SPBC800.01|AAA family ATPase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.1366343710568 1.36854292595822 -1.35784829283762 1.09018494731529 -2.33210857815747 Max fold change below threshold 3 2.33210857815747 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769769_at SPBC947.10.S1 --- 2.3317448131725 --- --- --- --- 4.01722478866577 1.72284066677094 5.97583961486816 5.72809886932373 0.567627012729645 0.850341975688934 0.633789002895355 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC947.10 /DEF=zinc finger protein --- --- --- --- --- --- SPBC947.10 // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.05512021689476 -2.3317448131725 -1.91651638309849 1.48755420202734 1.4258845772049 Max fold change below threshold 3 2.3317448131725 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778514_at YIR015W.S1 Subunit of nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends; not shared between Rnase MRP and Rnase P, in contrast to all other Rnase P protein subunits 2.33138765447643 150.774127960205 250.087333679199 RPR2 8033 // tRNA processing // traceable author statement 5655 // nucleolar ribonuclease P complex // inferred from direct assay 4526 // ribonuclease P activity // inferred from direct assay 249.757995605469 107.128471374512 194.419784545898 250.41667175293 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR015W /GEN=RPR2 /DB_XREF=GI:6322205 /SEG=NC_001141:+381945,382379 /DEF=Subunit of nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends; not shared between Rnase MRP and Rnase P, in contrast to all other Rnase P protein subunits /NOTE=Rpr2p; go_component: nucleolar ribonuclease P complex [goid GO:0005655] [evidence IDA] [pmid 9620854]; go_function: ribonuclease P activity [goid GO:0004526] [evidence IDA] [pmid 9620854]; go_process: tRNA processing [goid GO:0008033] [evidence TAS] [pmid 9620854] --- --- --- --- --- --- S0001454 // RPR2 SGDID:S0001454, Chr IX from 381945-382379, Verified ORF // sgd // 11 // --- /// YIR015W // cdna:known chromosome:SGD1:IX:381945:382379:1 gene:YIR015W // ensembl // 11 // --- --- No cerevisiae_gene -1.30491063296155 -2.33138765447643 1.21906105397437 -1.2846326117932 1.00263725750146 Max fold change below threshold 4 2.33138765447643 Max fold change at or above threshold 0.730654927557669 -1.38202991615224 -0.0890365102000625 0.740411498794636 200.430730819702 67.5110273335881 0.336829721956748 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776562_at YPR129W.S1 Protein containing an Lsm domain, may bind RNA and have a role in RNA processing; overproduction suppresses a null mutation in CHC1, which encodes the heavy chain of clathrin 2.33040375034566 771.939422607422 1703.88677978516 SCD6 16070 // RNA metabolism // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay 3723 // RNA binding // inferred from sequence similarity 1724.67358398438 740.075012207031 803.803833007813 1683.09997558594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR129W /GEN=SCD6 /DB_XREF=GI:6325386 /SEG=NC_001148:+792681,793730 /DEF=multicopy suppressor of clathrin deficiency /NOTE=Scd6p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006333 // SCD6 SGDID:S0006333, Chr XVI from 792683-793732, Verified ORF // sgd // 10 // --- /// GENSCAN00000017281 // cdna:Genscan chromosome:SGD1:XVI:792683:793732:1 // ensembl // 10 // --- /// GENEFINDER00000021033 // cdna:GeneFinder chromosome:SGD1:XVI:792683:793732:1 // ensembl // 10 // --- /// YPR129W // cdna:known chromosome:SGD1:XVI:792683:793732:1 gene:YPR129W // ensembl // 10 // --- YPR130C // ensembl // 8 // Negative Strand Matching Probes No cerevisiae_gene -1.15603058032162 -2.33040375034566 -1.28945227515785 -2.14563991008937 -1.02470061731417 Max fold change below threshold 4 2.33040375034566 Max fold change at or above threshold 0.903154384160403 -0.923708206749461 -0.805463267115247 0.826017089704306 1237.91310119629 538.956009431978 0.435374671219768 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776670_at YFL042C.S1 Due to a sequence change (deletion of G at 46151), YFL043C is now part of YFL042C. 2.32898524258598 1121.86502075195 1120.79418945313 --- --- --- --- 1134.53344726563 983.332946777344 1260.39709472656 1107.05493164063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL042C /GEN=SEC53 /DB_XREF=GI:14318476 /SEG=NC_001138:-45720,47744 /DEF=Due to a sequence change (deletion of G at 46151), YFL043C is now part of YFL042C. /NOTE=Yfl042cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001852 // span:636-658 // numtm:1 S0001852 // YFL042C SGDID:S0001852, Chr VI from 47744-45720, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018590 // cdna:GeneFinder chromosome:SGD1:VI:45720:47744:-1 // ensembl // 11 // --- /// GENSCAN00000023205 // cdna:Genscan chromosome:SGD1:VI:45720:47744:-1 // ensembl // 11 // --- /// YFL042C // cdna:known chromosome:SGD1:VI:45720:47744:-1 gene:YFL042C // ensembl // 11 // --- --- No cerevisiae_gene -2.32898524258598 -1.15376328128108 1.08991889261336 1.11093868388304 -1.02482127565637 Max fold change below threshold 4 2.32898524258598 Max fold change at or above threshold 0.116161907039349 -1.21403715661848 1.22345788463484 -0.125582635055703 1121.32960510254 113.667573988892 0.101368565916439 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771482_at SPBC17G9.12c.S1 --- 2.32842118722629 --- --- --- --- 1.08105897903442 1.35519671440125 1.11580801010132 0.464288413524628 0.432372987270355 0.696289002895355 0.601073980331421 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17G9.12c /DEF=hypothetical protein --- --- --- --- --- --- SPBC17G9.12c // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.13584982433854 1.25358258955647 -1.85005892758527 1.03214351089145 -2.32842118722629 Max fold change below threshold 0 2.32842118722629 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775316_at YDL045W-A.S1 Mitochondrial ribosomal protein of the small subunit 2.32815797229376 867.375579833984 735.617309570313 MRP10 6412 // protein biosynthesis // inferred from direct assay 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // inferred from direct assay 672.240112304688 923.544250488281 811.206909179688 798.994506835938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL045W-A /GEN=MRP10 /DB_XREF=GI:6320158 /SEG=NC_001136:+372245,372532 /DEF=Mitochondrial ribosomal protein of the small subunit /NOTE=Mrp10p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 9445368] --- --- --- --- --- --- S0006430 // MRP10 SGDID:S0006430, Chr IV from 372245-372532, Verified ORF // sgd // 11 // --- /// YDL045W-A // cdna:known chromosome:SGD1:IV:372245:372532:1 gene:YDL045W-A // ensembl // 11 // --- --- No cerevisiae_gene 2.32815797229376 1.3738309178279 -1.01205406696806 1.20672196486248 1.18855523824172 Max fold change below threshold 4 2.32815797229376 Max fold change at or above threshold -1.25735931838907 1.18723735269119 0.0944599213845531 -0.0243379556866693 801.496444702148 102.799836536038 0.128259878400634 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780044_at YIL066C.S1 Ribonucleotide-diphosphate reductase (RNR), large subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits 2.32810688225475 272.392944335938 689.004577636719 RNR3 6260 // DNA replication // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5971 // ribonucleoside-diphosphate reductase complex // inferred from direct assay 4748 // ribonucleoside-diphosphate reductase activity // inferred from direct assay 626.699829101563 275.597290039063 269.188598632813 751.309326171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL066C /GEN=RNR3 /DB_XREF=GI:6322123 /SEG=NC_001141:-238096,240705 /DEF=Ribonucleotide-diphosphate reductase (RNR), large subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits /NOTE=Rnr3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12732713]; go_function: ribonucleoside-diphosphate reductase activity [goid GO:0004748] [evidence IDA] [pmid 11893751]; go_process: DNA replication [goid GO:0006260] [evidence TAS] [pmid 9759483] --- --- --- --- --- --- S0001328 // RNR3 SGDID:S0001328, Chr IX from 240705-238096, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016427 // cdna:Genscan chromosome:SGD1:IX:238096:240753:-1 // ensembl // 11 // --- /// GENEFINDER00000018995 // cdna:GeneFinder chromosome:SGD1:IX:238096:240753:-1 // ensembl // 11 // --- /// YIL066C // cdna:known chromosome:SGD1:IX:238096:240705:-1 gene:YIL066C // ensembl // 11 // --- --- No cerevisiae_gene -1.72693696899129 -2.27396949009453 -1.85399620744982 -2.32810688225475 1.19883442005873 Max fold change below threshold 4 2.32810688225475 Max fold change at or above threshold 0.593824917101223 -0.834201869581325 -0.860267710689008 1.10064466316911 480.698760986328 245.865513404092 0.511475238462461 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769603_at YOR124C.S1 Ubiquitin-specific protease that removes ubiquitin from ubiquitinated proteins, cleaves at the C terminus of ubiquitin fusions; capable of cleaving polyubiquitin and possesses isopeptidase activity 2.32768159290404 1199.35961914063 1612.35186767578 UBP2 16579 // protein deubiquitination // inferred from direct assay 5737 // cytoplasm // inferred from curator 4843 // ubiquitin-specific protease activity // inferred from direct assay 1576.81433105469 1250.3544921875 1148.36474609375 1647.88940429688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR124C /GEN=UBP2 /DB_XREF=GI:6324698 /SEG=NC_001147:-554824,558642 /DEF=Ubiquitin-specific protease that removes ubiquitin from ubiquitinated proteins, cleaves at the C terminus of ubiquitin fusions; capable of cleaving polyubiquitin and possesses isopeptidase activity /NOTE=Ubp2p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 1429680]; go_function: ubiquitin-specific protease activity [goid GO:0004843] [evidence IDA] [pmid 1429680]; go_process: protein deubiquitination [goid GO:0016579] [evidence TAS] [pmid 8982460] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 0.0370000004768372 /// scop // a.2.7.Seryl-tRNA synthetase (SerRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) // 1.39999997615814 --- S0005650 // UBP2 SGDID:S0005650, Chr XV from 558642-554824, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017552 // cdna:Genscan chromosome:SGD1:XV:554824:558642:-1 // ensembl // 11 // --- /// GENEFINDER00000022731 // cdna:GeneFinder chromosome:SGD1:XV:554824:558642:-1 // ensembl // 11 // --- /// YOR124C // cdna:known chromosome:SGD1:XV:554824:558642:-1 gene:YOR124C // ensembl // 11 // --- --- No cerevisiae_gene -2.32768159290404 -1.26109382651639 -1.14369378211399 -1.37309538316841 1.04507510608091 Max fold change below threshold 4 2.32768159290404 Max fold change at or above threshold 0.70127572491105 -0.637869405542064 -1.05623349072793 0.992827171358941 1405.8557434082 243.782269332321 0.173404896252956 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776337_at YGL017W.S1 Arginyl-tRNA-protein transferase, catalyzes post-translational conjugation of arginine to the amino termini of acceptor proteins which are then subject to degradation via the N-end rule pathway 2.32765937178619 300.899711608887 551.265106201172 ATE1 6464 // protein modification // traceable author statement /// 16598 // protein arginylation // inferred from direct assay 5737 // cytoplasm // traceable author statement 4057 // arginyltransferase activity // traceable author statement 524.218078613281 225.212539672852 376.586883544922 578.312133789063 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL017W /GEN=ATE1 /DB_XREF=GI:6321421 /SEG=NC_001139:+459857,461368 /DEF=Arginyl-tRNA-protein transferase, catalyzes post-translational conjugation of arginine to the amino termini of acceptor proteins which are then subject to degradation via the N-end rule pathway /NOTE=Ate1p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 2185248]; go_function: arginyltransferase activity [goid GO:0004057] [evidence TAS] [pmid 2185248]; go_process: protein modification [goid GO:0006464] [evidence TAS] [pmid 9858543]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 2185248] --- --- --- --- --- --- S0002985 // ATE1 SGDID:S0002985, Chr VII from 459859-461370, Verified ORF // sgd // 11 // --- /// GENSCAN00000019328 // cdna:Genscan chromosome:SGD1:VII:459949:461370:1 // ensembl // 11 // --- /// GENEFINDER00000021725 // cdna:GeneFinder chromosome:SGD1:VII:460051:461370:1 // ensembl // 11 // --- /// YGL017W // cdna:known chromosome:SGD1:VII:459859:461370:1 gene:YGL017W // ensembl // 11 // --- --- No cerevisiae_gene -1.40309793468843 -2.32765937178619 1.00169895895684 -1.39202426191445 1.10318998405945 Max fold change below threshold 4 2.32765937178619 Max fold change at or above threshold 0.618184304255635 -1.26533604678476 -0.311786295436391 0.958938037965514 426.082408905029 158.748239048901 0.372576374267271 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776343_at YDL113C.S1 Protein required for transport of aminopeptidase I (Lap4p) through the cytoplasm-to-vacuole targeting pathway; binds phosphatidylinositol-3-phosphate, involved in localization of membranes to the preautophagosome, potential Cdc28p substrate 2.32729994437916 1045.11410522461 1356.22467041016 ATG20 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6623 // protein-vacuolar targeting // inferred from physical interaction /// 6914 // autophagy // inferred from direct assay 16020 // membrane // inferred from physical interaction 8289 // lipid binding // inferred from mutant phenotype /// 8289 // lipid binding // inferred from physical interaction 1387.50500488281 1173.77392578125 916.454284667969 1324.9443359375 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL113C /GEN=ATG20 /DB_XREF=GI:6320090 /SEG=NC_001136:-256633,258555 /DEF=Protein required for transport of aminopeptidase I (Lap4p) through the cytoplasm-to-vacuole targeting pathway; binds phosphatidylinositol-3-phosphate, involved in localization of membranes to the preautophagosome, potential Cdc28p substrate /NOTE=Atg20p; go_component: membrane [goid GO:0016020] [evidence IPI] [pmid 12048214]; go_function: lipid binding [goid GO:0008289] [evidence IMP,IPI] [pmid 12048214]; go_process: autophagy [goid GO:0006914] [evidence IDA] [pmid 12048214]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP,IPI] [pmid 12048214] --- --- --- --- --- --- S0002271 // ATG20 SGDID:S0002271, Chr IV from 258555-256633, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023697 // cdna:GeneFinder chromosome:SGD1:IV:256633:258555:-1 // ensembl // 11 // --- /// GENSCAN00000025013 // cdna:Genscan chromosome:SGD1:IV:256633:258555:-1 // ensembl // 11 // --- /// YDL113C // cdna:known chromosome:SGD1:IV:256633:258555:-1 gene:YDL113C // ensembl // 11 // --- --- No cerevisiae_gene -2.32729994437916 -1.18208879444933 -1.31659651114303 -1.51399259962597 -1.04721758284362 Max fold change below threshold 4 2.32729994437916 Max fold change at or above threshold 0.89119887467782 -0.128290343549151 -1.35569536511069 0.592786833982019 1200.66938781738 209.645256938832 0.174606980960789 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777735_at SPBP16F5.08c.S1 --- 2.32653127392542 --- --- --- --- 12.9338064193726 17.6233215332031 12.1836013793945 7.32288455963135 0.0561522990465164 0.0805663987994194 0.107177734375 0.0952147990465164 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP16F5.08c /DEF=flavin dependent monooxygenase (predicted) --- --- --- --- --- --- SPBP16F5.08c // |||flavin dependent monooxygenase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.32653127392542 1.36257811210213 -1.72652354758421 -1.06157498235676 -1.76621743986958 Max fold change below threshold 4 2.32653127392542 Max fold change at or above threshold MAAPAA No 4 0 MAAA 3 0 1 No No x = 1
AFFX-r2-TagC_at AFFX-r2-TagC --- 2.32643994679332 --- --- --- --- 0.469270259141922 0.910726845264435 0.931787550449371 0.818181931972504 0.919434010982513 0.77392578125 0.725830018520355 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Clone 76B3, synthetic insert (579 bp)+ poly A tail (21 bp), target sequence 1-579 --- --- --- --- --- --- AFFX-r2-TagC // --- // unknown // --- // --- /// AFFX-r2-TagC // --- // unknown // --- // --- /// AFFX-r2-TagC // --- // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-TagC // --- // unknown // --- // --- /// AFFX-r2-TagC // --- // affx // --- // --- /// AFFX-r2-TagC // --- // affx // --- // --- /// AFFX-r2-TagC // --- // affx // --- // --- /// AFFX-r2-TagC // --- // affx // --- // --- /// AFFX-r2-TagC // --- // affx // --- // --- /// AFFX-r2-TagC // --- // affx // --- // --- /// AFFX-r2-TagC // --- // affx // --- // --- /// AFFX-r2-TagC // --- // affx // --- // --- /// AFFX-r2-TagC // --- // affx // --- // --- /// AFFX-r2-TagC // --- // affx // --- // --- /// AFFX-r2-TagC // --- // affx // --- // --- /// AFFX-r2-TagC // --- // affx // --- // --- --- AFFX_control No 1.35146100014499 1.94072994723708 -2.32643994679332 1.98560964028102 1.74351967982923 Max fold change below threshold 0 2.32643994679332 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778323_at YPR137W.S1 Protein involved in pre-rRNA processing, associated with U3 snRNP; component of small ribosomal subunit (SSU) processosome; ortholog of the human U3-55k protein 2.32617191813786 180.623977661133 441.913833618164 RRP9 154 // rRNA modification // traceable author statement /// 6365 // 35S primary transcript processing // traceable author statement /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5732 // small nucleolar ribonucleoprotein complex // traceable author statement /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 30532 // small nuclear ribonucleoprotein complex // traceable author statement 30515 // snoRNA binding // inferred from physical interaction 390.516723632813 167.87956237793 193.368392944336 493.310943603516 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR137W /GEN=RRP9 /DB_XREF=GI:6325394 /SEG=NC_001148:+802353,804074 /DEF=part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA); Rrp9p is an ortholog of the human U3-55k protein; the human cDNA partially complements a yeast rrp9 null mutant. (Pluk et al. (1998) Mol. Cell. Biol. 18, 488-498.) /NOTE=Rrp9p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence TAS] [pmid 10690410]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence TAS] [pmid 10690410]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: snoRNA binding [goid GO:0030515] [evidence IPI] [pmid 11105764]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IPI] [pmid 12068309]; go_process: rRNA modification [goid GO:0000154] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0006341 // RRP9 SGDID:S0006341, Chr XVI from 802355-804076, Verified ORF // sgd // 11 // --- /// GENSCAN00000017286 // cdna:Genscan chromosome:SGD1:XVI:802355:804076:1 // ensembl // 11 // --- /// GENEFINDER00000020977 // cdna:GeneFinder chromosome:SGD1:XVI:802355:804076:1 // ensembl // 11 // --- /// YPR137W // cdna:known chromosome:SGD1:XVI:802355:804076:1 gene:YPR137W // ensembl // 11 // --- --- No cerevisiae_gene 1.79088641132714 -2.32617191813786 1.03897134924587 -2.01954785726139 1.26322616612792 Max fold change below threshold 4 2.32617191813786 Max fold change at or above threshold 0.504990102435207 -0.913718522169261 -0.751296294218538 1.16002471395259 311.268905639648 156.92944794563 0.504160374204883 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775856_at YDR120C.S1 tRNA methyltransferase, localizes to both the nucleus and mitochondrion to produce the modified base N2,N2-dimethylguanosine in tRNAs in both compartments 2.3261326525726 324.791320800781 653.55517578125 TRM1 30488 // tRNA methylation // inferred from mutant phenotype 5635 // nuclear membrane // inferred from direct assay /// 5637 // nuclear inner membrane // traceable author statement /// 5739 // mitochondrion // traceable author statement 4809 // tRNA (guanine-N2-)-methyltransferase activity // inferred from direct assay /// 4809 // tRNA (guanine-N2-)-methyltransferase activity // inferred from mutant phenotype 618.184020996094 265.756134033203 383.826507568359 688.926330566406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR120C /GEN=TRM1 /DB_XREF=GI:6320325 /SEG=NC_001136:-691543,693255 /DEF=N2,N2-dimethylguanosine-specific tRNA methyltransferase /NOTE=Trm1p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 7599275]; go_component: nuclear outer membrane [goid GO:0005640] [evidence IDA] [pmid 7599275]; go_function: tRNA (guanine-N2-)-methyltransferase activity [goid GO:0004809] [evidence IDA,IMP] [pmid 9801306]; go_process: tRNA methylation [goid GO:0030488] [evidence IMP] [pmid 2426253] --- --- --- --- --- --- S0002527 // TRM1 SGDID:S0002527, Chr IV from 693256-691544, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023800 // cdna:GeneFinder chromosome:SGD1:IV:691159:693208:-1 // ensembl // 11 // --- /// GENSCAN00000025185 // cdna:Genscan chromosome:SGD1:IV:691544:693256:-1 // ensembl // 11 // --- /// YDR120C // cdna:known chromosome:SGD1:IV:691544:693256:-1 gene:YDR120C // ensembl // 11 // --- --- No cerevisiae_gene 1.6905607411767 -2.3261326525726 -1.11625494889562 -1.6105818874065 1.11443568123344 Max fold change below threshold 4 2.3261326525726 Max fold change at or above threshold 0.651718591489946 -1.12862735386995 -0.532175941917474 1.00908470429748 489.173248291016 197.954722160275 0.404672011095973 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774231_at YGL061C.S1 Essential mitotic spindle protein required to maintain spindle integrity and kinetochore function, part of the multisubunit DASH complex which binds microtubules and is transferred to the kinetochore prior to mitosis 2.32603928525797 81.0314311981201 138.000732421875 DUO1 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from physical interaction /// 31110 // regulation of microtubule polymerization or depolymerization // inferred from physical interaction /// 31110 // regulation of microtubule polymerization or depolymerization // inferred from direct assay 778 // condensed nuclear chromosome kinetochore // inferred from physical interaction /// 5816 // spindle pole body // inferred from direct assay /// 5819 // spindle // inferred from physical interaction /// 5876 // spindle microtubule // inferred from direct assay /// 42729 // DASH complex // inferred from direct assay /// 42729 // DASH complex // inferred from physical interaction 5200 // structural constituent of cytoskeleton // inferred from physical interaction 132.991134643555 104.88793182373 57.1749305725098 143.010330200195 0.000244141003349796 0.00415039015933871 0.00292969006113708 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL061C /GEN=DUO1 /DB_XREF=GI:6321377 /SEG=NC_001139:-388969,389712 /DEF=Essential mitotic spindle protein required to maintain spindle integrity and kinetochore function, part of the multisubunit DASH complex which binds microtubules and is transferred to the kinetochore prior to mitosis /NOTE=Duo1p; go_component: DASH complex [goid GO:0042729] [evidence IDA,IPI] [pmid 11799062]; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IPI] [pmid 11756468]; go_component: spindle [goid GO:0005819] [evidence IPI] [pmid 11756468]; go_component: spindle microtubule [goid GO:0005876] [evidence IDA] [pmid 9817759]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 9817759]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 11756468]; go_process: mitotic spindle assembly (sensu Fungi) [goid GO:0030472] [evidence IPI] [pmid 11756468] --- --- --- --- --- --- S0003029 // DUO1 SGDID:S0003029, Chr VII from 389714-388971, reverse complement, Verified ORF // sgd // 11 // --- /// YGL061C // cdna:known chromosome:SGD1:VII:388971:389714:-1 gene:YGL061C // ensembl // 11 // --- --- No cerevisiae_gene -1.18242135093874 -1.26793552252563 -1.75190917987251 -2.32603928525797 1.07533731916413 Max fold change below threshold 4 2.32603928525797 Max fold change at or above threshold 0.610620507167438 -0.120384959808125 -1.36147000566812 0.871234458308804 109.516081809998 38.4445863805882 0.351040557196766 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771870_at YGL085W.S1 Hypothetical protein 2.3258099679204 136.868366241455 303.882064819336 --- --- 5739 // mitochondrion // inferred from direct assay --- 282.970062255859 121.665168762207 152.071563720703 324.794067382813 0.0239257998764515 0.0239257998764515 0.018554700538516 0.014160200022161 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL085W /GEN=MAD1 /DB_XREF=GI:6321353 /SEG=NC_001139:+349617,350441 /DEF=Hypothetical ORF /NOTE=Ygl085wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 3.90000009536743 S0003053 // span:15-32 // numtm:1 S0003053 // YGL085W SGDID:S0003053, Chr VII from 349619-350443, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019287 // cdna:Genscan chromosome:SGD1:VII:349835:350443:1 // ensembl // 11 // --- /// GENEFINDER00000021631 // cdna:GeneFinder chromosome:SGD1:VII:349835:350443:1 // ensembl // 11 // --- /// YGL085W // cdna:known chromosome:SGD1:VII:349619:350443:1 gene:YGL085W // ensembl // 11 // --- --- No cerevisiae_gene -1.23126074132353 -2.3258099679204 1.60438261530529 -1.86076907038035 1.14780363969789 Max fold change below threshold 4 2.3258099679204 Max fold change at or above threshold 0.634134353724299 -1.0000093456252 -0.691968977691076 1.05784396959197 220.375215530396 98.7091242697097 0.447913909157789 PPPPPP Called_P_>2EXP 4 0 PPPP 0 4 0 Yes Yes 3 < x
1774109_at YOL072W.S1 Nuclear pore-associated protein, forms a complex with Sac3p that is involved in transcription and in mRNA export from the nucleus; contains a PAM domain implicated in protein-protein binding 2.32507210726158 491.156829833984 1023.31045532227 THP1 282 // bud site selection // inferred from mutant phenotype /// 6310 // DNA recombination // inferred from mutant phenotype /// 6368 // RNA elongation from RNA polymerase II promoter // inferred from mutant phenotype /// 6405 // RNA-nucleus export // inferred from mutant phenotype 5643 // nuclear pore // inferred from genetic interaction /// 5643 // nuclear pore // inferred from direct assay /// 42175 // nuclear envelope-endoplasmic reticulum network // inferred from direct assay 5515 // protein binding // inferred from physical interaction 1012.51568603516 435.477111816406 546.836547851563 1034.10522460938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL072W /GEN=THP1 /DB_XREF=GI:6324500 /SEG=NC_001147:+194969,196336 /DEF=Thp1p /NOTE=go_component: nuclear envelope-endoplasmic reticulum network [goid GO:0042175] [evidence IDA] [pmid 12206772]; go_component: nuclear pore [goid GO:0005643] [evidence IDA,IGI] [pmid 12411502]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12411502]; go_process: DNA recombination [goid GO:0006310] [evidence IMP] [pmid 11139493]; go_process: RNA elongation from Pol II promoter [goid GO:0006368] [evidence IMP] [pmid 11139493]; go_process: RNA-nucleus export [goid GO:0006405] [evidence IMP] [pmid 12411502]; go_process: bud site selection [goid GO:0000282] [evidence IMP] [pmid 11452010] --- --- --- --- --- --- S0005433 // THP1 SGDID:S0005433, Chr XV from 194969-196336, Verified ORF // sgd // 11 // --- /// GENSCAN00000017408 // cdna:Genscan chromosome:SGD1:XV:195131:196336:1 // ensembl // 11 // --- /// YOL072W // cdna:known chromosome:SGD1:XV:194969:196336:1 gene:YOL072W // ensembl // 11 // --- --- No cerevisiae_gene -1.43775871269339 -2.32507210726158 -1.06888212543217 -1.85158744420646 1.02132267072203 Max fold change below threshold 4 2.32507210726158 Max fold change at or above threshold 0.821610295446681 -1.03555453693918 -0.677150718548328 0.891094960040832 757.233642578125 310.709401856075 0.410321708367598 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773288_at YPR110C.S1 RNA polymerase subunit, common to RNA polymerase I and III 2.32485749343804 390.225479125977 616.600433349609 RPC40 6360 // transcription from RNA polymerase I promoter // traceable author statement /// 6383 // transcription from RNA polymerase III promoter // traceable author statement 5666 // DNA-directed RNA polymerase III complex // traceable author statement /// 5736 // DNA-directed RNA polymerase I complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 579.892944335938 325.557525634766 454.893432617188 653.307922363281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR110C /GEN=RPC40 /DB_XREF=GI:6325367 /SEG=NC_001148:-745824,746831 /DEF=RNA polymerase subunit, common to RNA polymerase I and III /NOTE=Rpc40p; go_component: DNA-directed RNA polymerase I complex [goid GO:0005736] [evidence TAS] [pmid 8246845]; go_component: DNA-directed RNA polymerase III complex [goid GO:0005666] [evidence TAS] [pmid 8246845]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 8246845]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS]; go_process: transcription from Pol III promoter [goid GO:0006383] [evidence TAS] --- --- --- --- --- --- S0006314 // RPC40 SGDID:S0006314, Chr XVI from 746833-745826, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017265 // cdna:Genscan chromosome:SGD1:XVI:745826:746833:-1 // ensembl // 11 // --- /// GENEFINDER00000020840 // cdna:GeneFinder chromosome:SGD1:XVI:745826:746833:-1 // ensembl // 11 // --- /// YPR110C // cdna:known chromosome:SGD1:XVI:745826:746833:-1 gene:YPR110C // ensembl // 11 // --- --- No cerevisiae_gene 2.32485749343804 -1.78123034694183 1.22635635155415 -1.27478856091541 1.12660091615947 Max fold change below threshold 4 2.32485749343804 Max fold change at or above threshold 0.530700042581064 -1.23415140275878 -0.336680403485745 1.04013176366346 503.412956237793 144.111516792393 0.286268986538201 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Sp-18SrRNA-M_at AFFX-r2-Sp-18SrRNA-M --- 2.32413294207876 --- --- --- --- 25.9578876495361 34.3592948913574 12.8940916061401 11.4107789993286 0.00585938012227416 0.00805663969367743 0.0805663987994194 0.0676269978284836 P P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=Z19578 gi|288694:1471-3312 S.pombe gene encoding 18S, 5.8S, and 28S ribosomal RNA (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPRRNA.22 // |||18S, 5.8S, and 28S rRNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPRRNA.21 // |||18S, 5.8S, and 28S rRNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- /// SPRRNA.23 // |||18S, 5.8S, and 28S rRNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPRRNA.08 // |||18S, 5.8S, and 28S ribosomal RNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- SPRRNA.09 // sanger // 6 // Cross Hyb Matching Probes AFFX_control No -2.32413294207876 1.32365527408281 -1.47460156669947 -2.01316141085697 -2.27485675176633 Max fold change below threshold 4 2.32413294207876 Max fold change at or above threshold PAPPAA No 4 0 PPAA 2 2 0 No No 1 < x = 2
1773838_at YJR035W.S1 Protein involved in transcription-coupled repair nucleotide excision repair of UV-induced DNA lesions; homolog of human CSB protein 2.32319608809367 221.706932067871 361.47492980957 RAD26 6283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 6289 // nucleotide-excision repair // traceable author statement 5634 // nucleus // non-traceable author statement 8094 // DNA-dependent ATPase activity // traceable author statement 325.589111328125 170.131271362305 273.282592773438 397.360748291016 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR035W /GEN=RAD26 /DB_XREF=GI:6322495 /SEG=NC_001142:+497269,500526 /DEF=Protein involved in transcription-coupled repair nucleotide exicision repair of UV-induced DNA lesions; homolog of human CSB protein /NOTE=Rad26p; go_component: nucleus [goid GO:0005634] [evidence NAS] [pmid 9566886]; go_function: DNA-dependent ATPase activity [goid GO:0008094] [evidence TAS] [pmid 7957102]; go_process: nucleotide-excision repair [goid GO:0006289] [evidence TAS] [pmid 7957102]; go_process: transcription-coupled nucleotide-excision repair [goid GO:0006283] [evidence TAS] [pmid 7957102] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 3.79999995231628 --- S0003796 // RAD26 SGDID:S0003796, Chr X from 497269-500526, Verified ORF // sgd // 11 // --- /// GENSCAN00000024161 // cdna:Genscan chromosome:SGD1:X:497269:500526:1 // ensembl // 11 // --- /// GENEFINDER00000024534 // cdna:GeneFinder chromosome:SGD1:X:497269:500526:1 // ensembl // 11 // --- /// YJR035W // cdna:known chromosome:SGD1:X:497269:500526:1 gene:YJR035W // ensembl // 11 // --- --- No cerevisiae_gene -2.32319608809367 -1.91375229680594 1.59068597861599 -1.19140084270955 1.22043623225029 Max fold change below threshold 4 2.32319608809367 Max fold change at or above threshold 0.355547201601285 -1.27020451021838 -0.191465493919938 1.10612280253703 291.590930938721 95.6221290345868 0.327932452243113 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776910_at YMR100W.S1 Protein of unknown function, deletion causes multi-budding phenotype; has similarity to Aspergillus nidulans samB gene 2.32278914295713 544.229156494141 924.020111083984 MUB1 7116 // regulation of cell budding // inferred from sequence similarity /// 7116 // regulation of cell budding // inferred from mutant phenotype --- --- 916.377319335938 394.515930175781 693.9423828125 931.662902832031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR100W /GEN=MUB1 /DB_XREF=GI:6323747 /SEG=NC_001145:+466299,468161 /DEF=Homolog of samB gene of Aspergillus nidulans (deletion of samB results in mislocalization of septa /NOTE=Mub1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: regulation of budding [goid GO:0007116] [evidence IMP,ISS] [pmid 9427754] --- --- --- --- --- --- S0004706 // MUB1 SGDID:S0004706, Chr XIII from 466299-468161, Verified ORF // sgd // 11 // --- /// GENSCAN00000018796 // cdna:Genscan chromosome:SGD1:XIII:466299:468161:1 // ensembl // 11 // --- /// YMR100W // cdna:known chromosome:SGD1:XIII:466299:468161:1 gene:YMR100W // ensembl // 11 // --- --- No cerevisiae_gene -1.60709647807149 -2.32278914295713 -1.39253765314604 -1.32053804758534 1.01668044720615 Max fold change below threshold 4 2.32278914295713 Max fold change at or above threshold 0.725754869620194 -1.35236783849392 -0.160011163791825 0.786624132665554 734.124633789063 251.121546924311 0.342069364473154 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772456_at YIR036C.S1 Hypothetical protein 2.32270313190823 2083.27215576172 1329.29669189453 --- --- 5737 // cytoplasm // inferred from direct assay --- 1324.59191894531 1607.71520996094 2558.8291015625 1334.00146484375 0.00122069998178631 0.000732421991415322 0.0107421996071935 0.00585938012227416 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR036C /GEN=LYS1 /DB_XREF=GI:6322227 /SEG=NC_001141:-422071,422862 /DEF=Hypothetical ORF /NOTE=Yir036cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001475 // YIR036C SGDID:S0001475, Chr IX from 422862-422071, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016504 // cdna:Genscan chromosome:SGD1:IX:422071:422862:-1 // ensembl // 11 // --- /// GENEFINDER00000019060 // cdna:GeneFinder chromosome:SGD1:IX:422071:422862:-1 // ensembl // 11 // --- /// YIR036C // cdna:known chromosome:SGD1:IX:422071:422862:-1 gene:YIR036C // ensembl // 11 // --- --- No cerevisiae_gene -2.32270313190823 1.21374378551325 1.10409271649757 1.93178673745793 1.00710373192215 Max fold change below threshold 4 2.32270313190823 Max fold change at or above threshold -0.654330407713212 -0.16897589832813 1.46150605379829 -0.638199747756944 1706.28442382813 583.332977320696 0.341873235888752 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1769379_at YGL222C.S1 RNA-binding protein, activates mRNA decapping directly by binding to the mRNA substrate and enhancing the activity of the decapping proteins Dcp1p and Dcp2p 2.32249435866116 167.228019714355 73.3004531860352 EDC1 290 // deadenylylation-dependent decapping // inferred from genetic interaction /// 290 // deadenylylation-dependent decapping // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay 3729 // mRNA binding // inferred from physical interaction 84.3463363647461 195.893890380859 138.562149047852 62.2545700073242 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL222C /GEN=EDC1 /DB_XREF=GI:6321216 /SEG=NC_001139:-80657,81184 /DEF=RNA-binding protein, activates mRNA decapping directly by binding to the mRNA substrate and enhancing the activity of the decapping proteins Dcp1p and Dcp2p /NOTE=Edc1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: mRNA binding [goid GO:0003729] [evidence IPI] [pmid 11139489]; go_process: deadenylation-dependent decapping [goid GO:0000290] [evidence IGI,IPI] [pmid 11139489] --- --- --- --- --- --- S0003190 // EDC1 SGDID:S0003190, Chr VII from 81185-80658, reverse complement, Verified ORF // sgd // 11 // --- /// YGL222C // cdna:known chromosome:SGD1:VII:80658:81185:-1 gene:YGL222C // ensembl // 11 // --- GENEFINDER00000021723 // ensembl // 2 // Cross Hyb Matching Probes No cerevisiae_gene -1.26784624204445 2.32249435866116 -1.33578420681823 1.64277614203248 -1.3548617612301 Max fold change below threshold 4 2.32249435866116 Max fold change at or above threshold -0.601145170234777 1.2657867269185 0.306245681325765 -0.970887238009483 120.264236450195 59.749128603032 0.496815432140341 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770992_at SPBP23A10.16.S1 --- 2.32221418231264 --- --- --- --- 8.82298755645752 4.44122219085693 6.41837167739868 3.79938578605652 0.0676269978284836 0.24609400331974 0.00805663969367743 0.171387001872063 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP23A10.16 /GEN=tim18 /DEF=membrane anchor subunit --- --- --- --- --- --- SPBP23A10.16 // |tim18|sdh4|mitochondrial inner membrane complex anchor subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.04112978824207 -1.98661250829135 -1.0466973939856 -1.3746457824383 -2.32221418231264 Max fold change below threshold 4 2.32221418231264 Max fold change at or above threshold APAPPA No 4 0 AAPA 3 1 0 No No x = 1
1771825_at SPAC3H5.09c.S1 --- 2.32195934004299 --- --- --- --- 3.16287922859192 5.8796238899231 3.13307690620422 4.79701089859009 0.389892578125 0.129638999700546 0.432372987270355 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H5.09c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC3H5.09c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.32195934004299 1.85894669539458 1.60653190841573 -1.00951215794565 1.51665952187674 Max fold change below threshold 4 2.32195934004299 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770342_at YPR055W.S1 Essential 121kDa subunit of the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, and Exo84p), which has the essential function of mediating polarized targeting of secretory vesicles to active sites of exocytosis 2.32184382273671 363.20964050293 731.731475830078 SEC8 910 // cytokinesis // inferred from mutant phenotype /// 6893 // Golgi to plasma membrane transport // traceable author statement /// 6904 // vesicle docking during exocytosis // traceable author statement /// 6906 // vesicle fusion // traceable author statement /// 7121 // bipolar bud site selection // inferred from mutant phenotype 131 // incipient bud site // traceable author statement /// 145 // exocyst // traceable author statement /// 145 // exocyst // inferred from physical interaction /// 5934 // bud tip // inferred from direct assay /// 30427 // site of polarized growth // inferred from direct assay 5515 // protein binding // inferred from direct assay /// 5515 // protein binding // traceable author statement 706.203735351563 422.262847900391 304.156433105469 757.259216308594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR055W /GEN=SEC8 /DB_XREF=GI:6325312 /SEG=NC_001148:+667671,670868 /DEF=121 kDa component of the Exocyst complex, which is required for exocytosis, and which also contains the gene products encoded by SEC3, SEC5, SEC6, SEC10, SEC15, and EXO70 /NOTE=Sec8p; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IDA] [pmid 10652251]; go_component: bud tip [goid GO:0005934] [evidence TAS] [pmid 9128251]; go_component: exocyst [goid GO:0000145] [evidence TAS] [pmid 9700152]; go_component: incipient bud site [goid GO:0000131] [evidence TAS] [pmid 9128251]; go_function: protein binding [goid GO:0005515] [evidence IDA,TAS] [pmid 12665530]; go_process: Golgi to plasma membrane transport [goid GO:0006893] [evidence TAS] [pmid 9700152]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence TAS] [pmid 9700152]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251]; go_process: vesicle docking during exocytosis [goid GO:0006904] [evidence TAS] [pmid 9700152]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 9700152] --- --- --- --- --- --- S0006259 // SEC8 SGDID:S0006259, Chr XVI from 667673-670870, Verified ORF // sgd // 11 // --- /// GENSCAN00000017227 // cdna:Genscan chromosome:SGD1:XVI:667673:670870:1 // ensembl // 11 // --- /// YPR055W // cdna:known chromosome:SGD1:XVI:667673:670870:1 gene:YPR055W // ensembl // 11 // --- --- No cerevisiae_gene -1.39148391460343 -1.67242687549474 1.00592051712458 -2.32184382273671 1.07229568239485 Max fold change below threshold 4 2.32184382273671 Max fold change at or above threshold 0.724297668363446 -0.57132134702466 -1.11023956419735 0.957263242858561 547.470558166504 219.154615731011 0.400303929520826 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779575_at YDR189W.S1 Hydrophilic protein involved in vesicle trafficking between the ER and Golgi; SM (Sec1/Munc-18) family protein that binds the tSNARE Sed5p and stimulates its assembly into a trans-SNARE membrane-protein complex 2.32048943736403 526.022888183594 1201.40161132813 SLY1 6888 // ER to Golgi transport // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay /// 5794 // Golgi apparatus // inferred from direct assay /// 30134 // ER-Golgi transport vesicle // inferred from direct assay 149 // SNARE binding // traceable author statement 1211.3974609375 530.001831054688 522.0439453125 1191.40576171875 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR189W /GEN=SLY1 /DB_XREF=GI:6320395 /SEG=NC_001136:+838385,840385 /DEF=Hydrophilic suppressor of ypt1 involved in vesicle trafficking between ER and GolgiSm like protein /NOTE=Sly1p; go_component: ER-Golgi transport vesicle [goid GO:0030134] [evidence IDA] [pmid 10747087]; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 10747087]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 10747087]; go_function: SNARE binding [goid GO:0000149] [evidence TAS] [pmid 10747087]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 9545229] --- --- --- --- --- --- S0002597 // SLY1 SGDID:S0002597, Chr IV from 838387-840387, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023833 // cdna:GeneFinder chromosome:SGD1:IV:838387:840387:1 // ensembl // 11 // --- /// GENSCAN00000025241 // cdna:Genscan chromosome:SGD1:IV:838387:840387:1 // ensembl // 11 // --- /// YDR189W // cdna:known chromosome:SGD1:IV:838387:840387:1 gene:YDR189W // ensembl // 11 // --- --- No cerevisiae_gene -2.24032873371172 -2.2856476901728 -1.1501648040183 -2.32048943736403 -1.01677992490981 Max fold change below threshold 4 2.32048943736403 Max fold change at or above threshold 0.891434201496522 -0.85560406672154 -0.876007383555403 0.840177248780421 863.712249755859 390.029023564447 0.4515728747331 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770349_at YDR146C.S1 Transcription factor that activates transcription of genes expressed in G1 phase and at the G1/M boundary; localization to the nucleus occurs during G1 and appears to be regulated by phosphorylation by Cdc28p kinase 2.32010930217167 115.714027404785 241.542762756348 SWI5 114 // G1-specific transcription in mitotic cell cycle // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 16563 // transcriptional activator activity // inferred from direct assay 232.683746337891 100.289993286133 131.138061523438 250.401779174805 0.000244141003349796 0.00195312988944352 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR146C /GEN=SWI5 /DB_XREF=GI:6320350 /SEG=NC_001136:-748607,750736 /DEF=Transcription factor that activates transcription of genes expressed in G1 phase and at the G1/M boundary; localization to the nucleus occurs during G1 and appears to be regulated by phosphorylation by Cdc28p kinase /NOTE=Swi5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 8816483]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8816483]; go_function: transcriptional activator activity [goid GO:0016563] [evidence IDA] [pmid 10409653]; go_process: G1-specific transcription in mitotic cell cycle [goid GO:0000114] [evidence IDA] [pmid 10409653] --- --- --- --- scop // a.4.5.CAP C-terminal domain-like // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; CAP C-terminal domain-like // 2.70000004768372 --- S0002553 // SWI5 SGDID:S0002553, Chr IV from 750737-748608, reverse complement, Verified ORF // sgd // 9 // --- /// GENEFINDER00000023419 // cdna:GeneFinder chromosome:SGD1:IV:748503:750737:-1 // ensembl // 9 // --- /// GENSCAN00000025205 // cdna:Genscan chromosome:SGD1:IV:748503:750737:-1 // ensembl // 9 // --- /// YDR146C // cdna:known chromosome:SGD1:IV:748608:750737:-1 gene:YDR146C // ensembl // 9 // --- --- No cerevisiae_gene 1.55013921420731 -2.32010930217167 -1.62613514469506 -1.77434181682108 1.07614641381605 Max fold change below threshold 4 2.32010930217167 Max fold change at or above threshold 0.729642390433129 -1.05741647068211 -0.64102738569098 0.968801465939959 178.628395080566 74.0847187143773 0.414742116901196 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775847_at YCL030C.S1 Multifunctional enzyme containing phosphoribosyl-ATP pyrophosphatase, phosphoribosyl-AMP cyclohydrolase, and histidinol dehydrogenase activities; catalyzes the second, third, ninth and tenth steps in histidine biosynthesis 2.31999568081949 4300.74609375 1929.19573974609 HIS4 105 // histidine biosynthesis // traceable author statement 5622 // intracellular // traceable author statement 4399 // histidinol dehydrogenase activity // traceable author statement /// 4635 // phosphoribosyl-AMP cyclohydrolase activity // traceable author statement /// 4636 // phosphoribosyl-ATP diphosphatase activity // traceable author statement 1901.49279785156 4411.455078125 4190.037109375 1956.89868164063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL030C /GEN=HIS4 /DB_XREF=GI:10383761 /SEG=NC_001135:-65934,68333 /DEF=Multifunctional enzyme containing phosphoribosyl-ATP pyrophosphatase, phosphoribosyl-AMP cyclohydrolase, and histidinol dehydrogenase activities; catalyzes the second, third, ninth and tenth steps in histidine biosynthesis /NOTE=His4p; go_component: cell [goid GO:0005623] [evidence TAS] [pmid 8852895]; go_function: histidinol dehydrogenase activity [goid GO:0004399] [evidence TAS] [pmid 8852895]; go_function: phosphoribosyl-AMP cyclohydrolase activity [goid GO:0004635] [evidence TAS] [pmid 8852895]; go_function: phosphoribosyl-ATP diphosphatase activity [goid GO:0004636] [evidence TAS] [pmid 8852895]; go_process: histidine biosynthesis [goid GO:0000105] [evidence TAS] [pmid 8852895] --- --- --- --- --- --- S0000535 // HIS4 SGDID:S0000535, Chr III from 68333-65934, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022442 // cdna:Genscan chromosome:SGD1:III:65934:68333:-1 // ensembl // 11 // --- /// GENEFINDER00000023362 // cdna:GeneFinder chromosome:SGD1:III:65934:68333:-1 // ensembl // 11 // --- /// YCL030C // cdna:known chromosome:SGD1:III:65934:68333:-1 gene:YCL030C // ensembl // 11 // --- --- No cerevisiae_gene 1.95116732465478 2.31999568081949 -1.14421714890147 2.20355139609742 1.02913809815723 Max fold change below threshold 4 2.31999568081949 Max fold change at or above threshold -0.884212935294227 0.944696116099792 0.783357704614167 -0.843840885419732 3114.97091674805 1372.38222882669 0.440576257533546 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771577_at YBR015C.S1 Alpha-1,2-mannosyltransferase, responsible for addition of the first alpha-1,2-linked mannose to form the branches on the mannan backbone of oligosaccharides, localizes to an early Golgi compartment 2.31983998389909 798.930206298828 1595.34088134766 MNN2 6486 // protein amino acid glycosylation // inferred from mutant phenotype 5794 // Golgi apparatus // inferred from direct assay 26 // alpha-1,2-mannosyltransferase activity // inferred from mutant phenotype /// 26 // alpha-1,2-mannosyltransferase activity // traceable author statement 1596.99475097656 688.407287597656 909.453125 1593.68701171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR015C /GEN=MNN2 /DB_XREF=GI:6319489 /SEG=NC_001134:-267672,269465 /DEF=Alpha-1,2-mannosyltransferase, responsible for addition of the first alpha-1,2-linked mannose to form the branches on the mannan backbone of oligosaccharides, localizes to an early Golgi compartment /NOTE=Mnn2p; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 9756928]; go_function: alpha-1,2-mannosyltransferase activity [goid GO:0000026] [evidence TAS] [pmid 10929130]; go_function: alpha-1,2-mannosyltransferase activity [goid GO:0000026] [evidence IMP] [pmid 9756928]; go_process: protein amino acid glycosylation [goid GO:0006486] [evidence IMP] [pmid 9756928] --- --- --- --- --- S0000219 // span:7-26 // numtm:1 S0000219 // MNN2 SGDID:S0000219, Chr II from 269503-267710, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021151 // cdna:Genscan chromosome:SGD1:II:267710:269413:-1 // ensembl // 11 // --- /// GENEFINDER00000022214 // cdna:GeneFinder chromosome:SGD1:II:267710:269503:-1 // ensembl // 11 // --- /// YBR015C // cdna:known chromosome:SGD1:II:267710:269503:-1 gene:YBR015C // ensembl // 11 // --- --- No cerevisiae_gene -1.32268167917507 -2.31983998389909 1.04636332845942 -1.75599457198694 -1.00207552626927 Max fold change below threshold 4 2.31983998389909 Max fold change at or above threshold 0.853339593810802 -1.08567704772436 -0.613943093052261 0.846280546965817 1197.13554382324 468.581570635494 0.391418977619698 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775649_at YER174C.S1 Hydroperoxide and superoxide-radical responsive glutathione-dependent oxidoreductase; monothiol glutaredoxin subfamily member along with Grx3p and Grx5p; protects cells from oxidative damage 2.31980473273518 506.417999267578 989.938293457031 GRX4 6979 // response to oxidative stress // inferred from mutant phenotype /// 6979 // response to oxidative stress // inferred from genetic interaction 5622 // intracellular // traceable author statement 30508 // thiol-disulfide exchange intermediate activity // inferred from mutant phenotype /// 30508 // thiol-disulfide exchange intermediate activity // inferred from genetic interaction /// 30508 // thiol-disulfide exchange intermediate activity // inferred from sequence similarity 1010.30596923828 435.513366699219 577.322631835938 969.570617675781 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER174C /GEN=GRX4 /DB_XREF=GI:6321022 /SEG=NC_001137:-538429,539163 /DEF=Hydroperoxide and superoxide-radical responsive glutathione-dependent oxidoreductase; monothiol glutaredoxin subfamily member along with Grx3p and Grx5p; protects cells from oxidative damage /NOTE=Grx4p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 11950925]; go_function: thiol-disulfide exchange intermediate activity [goid GO:0030508] [evidence IGI,IMP,ISS] [pmid 10567543]; go_process: response to oxidative stress [goid GO:0006979] [evidence IGI,IMP] [pmid 10567543] --- --- --- --- --- --- S0000976 // GRX4 SGDID:S0000976, Chr V from 539163-538429, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016953 // cdna:Genscan chromosome:SGD1:V:538429:539046:-1 // ensembl // 11 // --- /// GENEFINDER00000019581 // cdna:GeneFinder chromosome:SGD1:V:538429:539163:-1 // ensembl // 11 // --- /// YER174C // cdna:known chromosome:SGD1:V:538429:539163:-1 gene:YER174C // ensembl // 11 // --- --- No cerevisiae_gene 1.40271359867692 -2.31980473273518 -1.14361138174602 -1.74998504047108 -1.04201380571964 Max fold change below threshold 4 2.31980473273518 Max fold change at or above threshold 0.917862494445633 -1.09482187521405 -0.598264873344491 0.775224254112913 748.178146362305 285.585067983735 0.381707310447745 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773477_at YJR119C.S1 Hypothetical protein 2.31971906208717 223.208045959473 516.021728515625 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 470.285095214844 243.68244934082 202.733642578125 561.758361816406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR119C /GEN=ILM1 /DB_XREF=GI:6322579 /SEG=NC_001142:-644219,646405 /DEF=Hypothetical ORF /NOTE=Yjr119cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003880 // YJR119C SGDID:S0003880, Chr X from 646405-644219, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024226 // cdna:Genscan chromosome:SGD1:X:644219:646405:-1 // ensembl // 11 // --- /// YJR119C // cdna:known chromosome:SGD1:X:644219:646405:-1 gene:YJR119C // ensembl // 11 // --- --- No cerevisiae_gene -1.12381549542738 -1.92990958719843 1.25479254073022 -2.31971906208717 1.19450598696898 Max fold change below threshold 4 2.31971906208717 Max fold change at or above threshold 0.578774944057928 -0.724013004077595 -0.959436609725288 1.10467466974495 369.614887237549 173.936707196535 0.470589019009798 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772778_at YBL078C.S1 Protein required for autophagy; modified by the serial action of Atg4p, Atg7p, and Atg3p, and conjugated at the C terminus with phosphatidylethanolamine, to become the form essential for generation of autophagosomes 2.31916844621357 3453.74987792969 2916.49584960938 ATG8 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6914 // autophagy // inferred from genetic interaction 5776 // autophagic vacuole // inferred from direct assay /// 5875 // microtubule associated complex // inferred from physical interaction /// 5875 // microtubule associated complex // inferred from sequence similarity 8017 // microtubule binding // inferred from physical interaction 3050.61328125 3785.22412109375 3122.27563476563 2782.37841796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL078C /GEN=ATG8 /DB_XREF=GI:6319393 /SEG=NC_001134:-80375,80728 /DEF=Forms a protein complex with Aut2p to mediate attachment of autophagosomes to microtubules. Defective in maturation of the vacuolar protein, aminopeptidase I /NOTE=Atg8p; go_component: microtubule associated complex [goid GO:0005875] [evidence IPI,ISS] [pmid 9649430]; go_function: microtubule binding [goid GO:0008017] [evidence IPI] [pmid 9649430]; go_process: autophagy [goid GO:0006914] [evidence IGI] [pmid 9649430]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 9649430] --- --- --- --- --- --- S0000174 // ATG8 SGDID:S0000174, Chr II from 80728-80375, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021079 // cdna:Genscan chromosome:SGD1:II:80375:80728:-1 // ensembl // 11 // --- /// YBL078C // cdna:known chromosome:SGD1:II:80375:80728:-1 gene:YBL078C // ensembl // 11 // --- --- No cerevisiae_gene -2.31916844621357 1.24080759247948 1.09888004397169 1.02349113011344 -1.09640488207822 Max fold change below threshold 4 2.31916844621357 Max fold change at or above threshold -0.315767823378627 1.40876705051501 -0.147536943734548 -0.945462283401839 3185.12286376953 425.976215943463 0.133739335706293 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775613_at YOR017W.S1 Protein with a role in mitochondrial RNA stability and/or processing, located in the mitochondrial membrane 2.3190232814889 179.001533508301 456.339813232422 PET127 6396 // RNA processing // inferred from mutant phenotype 5740 // mitochondrial membrane // inferred from direct assay --- 414.360656738281 179.324111938477 178.678955078125 498.318969726563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR017W /GEN=PET127 /DB_XREF=GI:6324591 /SEG=NC_001147:+361411,363813 /DEF=Protein with a role in mitochondrial RNA stability and/or processing, located in the mitochondrial membrane /NOTE=Pet127p; go_component: mitochondrial membrane [goid GO:0005740] [evidence IDA] [pmid 9111353]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: RNA processing [goid GO:0006396] [evidence IMP] [pmid 9111353] --- --- --- --- --- --- S0005543 // PET127 SGDID:S0005543, Chr XV from 361411-363813, Verified ORF // sgd // 11 // --- /// GENSCAN00000017478 // cdna:Genscan chromosome:SGD1:XV:361411:363813:1 // ensembl // 11 // --- /// GENEFINDER00000022745 // cdna:GeneFinder chromosome:SGD1:XV:361411:363813:1 // ensembl // 11 // --- /// YOR017W // cdna:known chromosome:SGD1:XV:361411:363813:1 gene:YOR017W // ensembl // 11 // --- --- No cerevisiae_gene -2.21173799892311 -2.31068009906243 1.04111757674493 -2.3190232814889 1.20262134356378 Max fold change below threshold 4 2.3190232814889 Max fold change at or above threshold 0.590476699959928 -0.844869532496023 -0.848809445200396 1.10320227773649 317.670673370361 163.749024092706 0.515467865999066 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772172_at YJR002W.S1 Component of the SSU processome, which is required for pre-18S rRNA processing, interacts with and controls the stability of Imp3p and Imp4p, essential for viability; similar to human Mpp10p 2.31842288120568 338.779724121094 243.547012329102 MPP10 154 // rRNA modification // traceable author statement /// 6365 // 35S primary transcript processing // traceable author statement /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // traceable author statement /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 30532 // small nuclear ribonucleoprotein complex // traceable author statement --- 221.703857421875 306.934234619141 370.625213623047 265.390167236328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR002W /GEN=MPP10 /DB_XREF=GI:6322461 /SEG=NC_001142:+438779,440560 /DEF=Component of the SSU processome, which is required for pre-18S rRNA processing, interacts with and controls the stability of Imp3p and Imp4p, essential for viability /NOTE=Mpp10p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence TAS] [pmid 10690410]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence TAS] [pmid 10690410]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IPI] [pmid 12068309]; go_process: rRNA modification [goid GO:0000154] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0003762 // MPP10 SGDID:S0003762, Chr X from 438779-440560, Verified ORF // sgd // 11 // --- /// GENSCAN00000024134 // cdna:Genscan chromosome:SGD1:X:438779:440560:1 // ensembl // 11 // --- /// GENEFINDER00000024529 // cdna:GeneFinder chromosome:SGD1:X:438779:440560:1 // ensembl // 11 // --- /// YJR002W // cdna:known chromosome:SGD1:X:438779:440560:1 gene:YJR002W // ensembl // 11 // --- --- No cerevisiae_gene 2.31842288120568 1.38443344282947 1.27390818622199 1.67171296851995 1.19704803661275 Max fold change below threshold 4 2.31842288120568 Max fold change at or above threshold -1.09588915858615 0.248822966111941 1.2536998013067 -0.406633608832497 291.163368225098 63.3818760401238 0.217684925224259 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779029_at YLR074C.S1 Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern 2.31807001495041 1185.26556396484 607.763732910156 BUD20 282 // bud site selection // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 626.909912109375 1113.20141601563 1257.32971191406 588.617553710938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR074C /GEN=BUD20 /DB_XREF=GI:6323103 /SEG=NC_001144:-281957,282457 /DEF=Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern /NOTE=Bud20p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11452010]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: bud site selection [goid GO:0000282] [evidence IMP] [pmid 11452010] --- --- --- --- --- --- S0004064 // BUD20 SGDID:S0004064, Chr XII from 282457-281957, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017875 // cdna:Genscan chromosome:SGD1:XII:281957:282457:-1 // ensembl // 11 // --- /// GENEFINDER00000024894 // cdna:GeneFinder chromosome:SGD1:XII:281957:282457:-1 // ensembl // 11 // --- /// YLR074C // cdna:known chromosome:SGD1:XII:281957:282457:-1 gene:YLR074C // ensembl // 11 // --- --- No cerevisiae_gene 2.31807001495041 1.77569598839172 1.46751100056351 2.00559871143767 -1.06505473402386 Max fold change below threshold 4 2.31807001495041 Max fold change at or above threshold -0.79544996112913 0.63931918702437 1.06455966659253 -0.908428892487772 896.5146484375 338.93362185275 0.378056981493234 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773327_at YOL003C.S1 DHHC-CRD protein 2.31803423870808 335.721084594727 598.271423339844 --- --- --- --- 571.286499023438 246.453002929688 424.989166259766 625.25634765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL003C /GEN=SIN3 /DB_XREF=GI:6324571 /SEG=NC_001147:-321858,322994 /DEF=DHHC-CRD protein /NOTE=Yol003cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005363 // span:9-31,41-58,127-149,164-186 // numtm:4 S0005363 // YOL003C SGDID:S0005363, Chr XV from 322994-321858, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022771 // cdna:GeneFinder chromosome:SGD1:XV:321858:322994:-1 // ensembl // 11 // --- /// YOL003C // cdna:known chromosome:SGD1:XV:321858:322994:-1 gene:YOL003C // ensembl // 11 // --- --- No cerevisiae_gene -1.9326551321464 -2.31803423870808 -1.1416543927088 -1.34423779328589 1.09447072305239 Max fold change below threshold 4 2.31803423870808 Max fold change at or above threshold 0.614797245314107 -1.30011568327918 -0.247634299759731 0.932952737724804 466.996253967285 169.633559439371 0.363243940391982 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776737_at SPBC660.06.S1 --- 2.31794411361103 --- --- --- --- 6.81176328659058 7.47922515869141 12.5008821487427 8.75514984130859 0.219482004642487 0.219482004642487 0.0805663987994194 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC660.06 /DEF=hypothetical protein --- --- --- --- --- --- SPBC660.06 // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.48152120220847 1.09798665103568 2.31794411361103 1.83519033512975 1.2852986037468 Max fold change below threshold 4 2.31794411361103 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773370_at YKL201C.S1 Putative positive regulator of mannosylphosphate transferase (Mnn6p), involved in mannosylphosphorylation of N-linked oligosaccharides; expression increases in late-logarithmic and stationary growth phases 2.31772299620588 3208.76501464844 3250.48010253906 MNN4 6487 // N-linked glycosylation // inferred from mutant phenotype /// 6493 // O-linked glycosylation // inferred from mutant phenotype /// 6950 // response to stress // inferred from direct assay 16020 // membrane // inferred from sequence similarity --- 4162.16650390625 3812.70703125 2604.82299804688 2338.79370117188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL201C /GEN=MNN4 /DB_XREF=GI:6322648 /SEG=NC_001143:-63931,67467 /DEF=Putative positive regulator of mannosylphosphate transferase (Mnn6p), involved in mannosylphosphorylation of N-linked oligosaccharides; epxression increases in late-logarithmic and stationary growth phases /NOTE=Mnn4p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 9023541]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IMP] [pmid 9023541]; go_process: O-linked glycosylation [goid GO:0006493] [evidence IMP] [pmid 9813355]; go_process: response to stress [goid GO:0006950] [evidence IDA] [pmid 9459307] --- --- --- --- --- S0001684 // span:28-45 // numtm:1 S0001684 // MNN4 SGDID:S0001684, Chr XI from 67467-63931, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018267 // cdna:Genscan chromosome:SGD1:XI:55936:67467:-1 // ensembl // 10 // --- /// GENEFINDER00000022984 // cdna:GeneFinder chromosome:SGD1:XI:63931:67467:-1 // ensembl // 11 // --- /// YKL201C // cdna:known chromosome:SGD1:XI:63931:67467:-1 gene:YKL201C // ensembl // 11 // --- YKL202W // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene -2.31772299620588 -1.09165652377484 -1.47539376756809 -1.59786922452201 -1.77962105072404 Max fold change below threshold 4 2.31772299620588 Max fold change at or above threshold 1.04401394595204 0.652782449750633 -0.699483877316959 -0.997312518385712 3229.62255859375 893.229394998275 0.276573927384012 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771872_at SPBC1289.16c.S1 --- 2.31625807298314 --- --- --- --- 2.94132161140442 1.26985919475555 4.62123966217041 5.41705226898193 0.274170011281967 0.432372987270355 0.149657994508743 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1289.16c /DEF=copper amine oxidase (predicted) --- --- --- --- --- --- SPBC1289.16c // ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.71973470909832 -2.31625807298314 2.07552300649836 1.57114395251863 1.841706887128 Max fold change below threshold 3 2.31625807298314 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771114_at SPAC1039.03.S1 --- 2.31551328482298 --- --- --- --- 5.625084400177 6.47925710678101 10.3605880737305 7.05752182006836 0.366210997104645 0.5 0.24609400331974 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1039.03 /DEF=esteraselipase (predicted) --- --- --- --- --- --- SPAC1039.03 // |||esterase/lipase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.31551328482298 1.15185064717911 1.07722374228563 1.84185468815445 1.25465172039841 Max fold change below threshold 4 2.31551328482298 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770510_at YLR233C.S1 TLC1 RNA-associated factor involved in telomere length regulation as the recruitment subunit of the telomerase holoenzyme, has a possible role in activating Est2p-TLC1-RNA bound to the telomere 2.31528143226746 79.0361099243164 161.055191040039 EST1 7004 // telomerase-dependent telomere maintenance // traceable author statement 5634 // nucleus // inferred from direct assay /// 5697 // telomerase holoenzyme complex // traceable author statement /// 5697 // telomerase holoenzyme complex // inferred from direct assay /// 5697 // telomerase holoenzyme complex // inferred from physical interaction /// 5730 // nucleolus // inferred from direct assay 3697 // single-stranded DNA binding // traceable author statement /// 3720 // telomerase activity // inferred from direct assay /// 3720 // telomerase activity // inferred from physical interaction /// 3723 // RNA binding // inferred from physical interaction 176.612915039063 76.2814025878906 81.7908172607422 145.497467041016 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR233C /GEN=EST1 /DB_XREF=GI:6323262 /SEG=NC_001144:-607427,609526 /DEF=TLC1 RNA-associated factor involved in telomere length regulation as the recruitment subunit of the telomerase holoenzyme, has a possible role in activating Est2p-TLC1-RNA bound to the telomere /NOTE=Est1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 12101098]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12101098]; go_component: telomerase holoenzyme complex [goid GO:0005697] [evidence IDA,IPI] [pmid 10898986]; go_component: telomerase holoenzyme complex [goid GO:0005697] [evidence TAS] [pmid 11884619]; go_function: RNA binding [goid GO:0003723] [evidence IPI] [pmid 12414733]; go_function: single-stranded DNA binding [goid GO:0003697] [evidence TAS] [pmid 11884619]; go_function: telomerase activity [goid GO:0003720] [evidence IDA,IPI] [pmid 10898986]; go_process: telomerase-dependent telomere maintenance [goid GO:0007004] [evidence TAS] [pmid 11884619] --- --- --- --- --- --- S0004223 // EST1 SGDID:S0004223, Chr XII from 609526-607427, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018002 // cdna:Genscan chromosome:SGD1:XII:607427:608248:-1 // ensembl // 11 // --- /// GENEFINDER00000024810 // cdna:GeneFinder chromosome:SGD1:XII:607427:608413:-1 // ensembl // 11 // --- /// YLR233C // cdna:known chromosome:SGD1:XII:607427:609526:-1 gene:YLR233C // ensembl // 11 // --- --- No cerevisiae_gene -1.81164756959607 -2.31528143226746 -1.05079454365964 -2.15932449331122 -1.21385559921312 Max fold change below threshold 4 2.31528143226746 Max fold change at or above threshold 1.1525639876217 -0.891701171400639 -0.779446265766697 0.51858344954564 120.045650482178 49.0795002831997 0.408840304384757 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773356_at YNL142W.S1 Ammonium permease involved in regulation of pseudohyphal growth; belongs to a ubiquitous family of cytoplasmic membrane proteins that transport only ammonium (NH4+); expression is under the nitrogen catabolite repression regulation 2.31513239233464 330.29508972168 153.527046203613 MEP2 7124 // pseudohyphal growth // inferred from mutant phenotype /// 15696 // ammonium transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay 8519 // ammonium transporter activity // inferred from mutant phenotype 154.02587890625 303.999877929688 356.590301513672 153.028213500977 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL142W /GEN=MEP2 /DB_XREF=GI:6324187 /SEG=NC_001146:+357453,358952 /DEF=belongs to a ubiquitous family of cytoplasmic membrane proteins that transport only ammonium (NH(4)(+) + NH(3)). /NOTE=Mep2p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 11069679]; go_function: ammonium transporter activity [goid GO:0008519] [evidence IMP] [pmid 9234685]; go_process: ammonium transport [goid GO:0015696] [evidence IMP] [pmid 9234685]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 9482721] --- --- --- --- --- S0005086 // span:34-56,63-85,123-145,150-172,187-209,228-245,255-277,290-312,316-338,345-367,391-413 // numtm:11 S0005086 // MEP2 SGDID:S0005086, Chr XIV from 357453-358952, Verified ORF // sgd // 11 // --- /// GENSCAN00000019921 // cdna:Genscan chromosome:SGD1:XIV:357546:358952:1 // ensembl // 11 // --- /// GENEFINDER00000020691 // cdna:GeneFinder chromosome:SGD1:XIV:357663:358952:1 // ensembl // 11 // --- /// YNL142W // cdna:known chromosome:SGD1:XIV:357453:358952:1 gene:YNL142W // ensembl // 11 // --- --- No cerevisiae_gene 2.00346435194725 1.97369351233971 1.18737052021747 2.31513239233464 -1.00651948671718 Max fold change below threshold 4 2.31513239233464 Max fold change at or above threshold -0.842685816333551 0.595337622573466 1.09960010985967 -0.852251916099589 241.911067962646 104.291762544167 0.431116126362069 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772380_at SPBC27.08c.S1 --- 2.31452847253626 --- --- --- --- 4.38644409179688 4.79611730575562 8.13732528686523 5.54356670379639 0.2392578125 0.171387001872063 0.129638999700546 0.030273400247097 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC27.08c /GEN=met3 /DEF=sulfate adenylyltransferase (predicted) --- --- --- --- --- --- SPBC27.08c // |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.47930779181266 1.09339528907364 2.31452847253626 1.85510748947716 1.26379513514454 Max fold change below threshold 4 2.31452847253626 Max fold change at or above threshold AAAPAP No 4 0 AAAP 3 1 0 No No x = 1
1778573_at YBR025C.S1 Hypothetical protein 2.31409731346298 4724.3408203125 2265.64135742188 --- --- 5737 // cytoplasm // inferred from direct assay --- 2214.58349609375 5124.76171875 4323.919921875 2316.69921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR025C /GEN=SCO2 /DB_XREF=GI:6319499 /SEG=NC_001134:-290643,291827 /DEF=Hypothetical ORF /NOTE=Ybr025cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10684247]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000229 // YBR025C SGDID:S0000229, Chr II from 291865-290681, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021159 // cdna:Genscan chromosome:SGD1:II:290681:291865:-1 // ensembl // 11 // --- /// GENEFINDER00000022378 // cdna:GeneFinder chromosome:SGD1:II:290681:291865:-1 // ensembl // 11 // --- /// YBR025C // cdna:known chromosome:SGD1:II:290681:291865:-1 gene:YBR025C // ensembl // 11 // --- --- No cerevisiae_gene 1.90875845861077 2.31409731346298 -1.02938343103904 1.95247545622094 1.04611057692626 Max fold change below threshold 4 2.31409731346298 Max fold change at or above threshold -0.87862180273474 1.11835638663316 0.568814922456494 -0.808549506354918 3494.99108886719 1457.29093995633 0.416965566692955 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772188_at YOR059C.S1 Hypothetical protein 2.31402974406905 1487.48004150391 678.051940917969 --- --- 5811 // lipid particle // inferred from direct assay --- 666.082763671875 1541.33532714844 1433.62475585938 690.021118164063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR059C /GEN=ASE1 /DB_XREF=GI:6324633 /SEG=NC_001147:-438907,440259 /DEF=Hypothetical ORF /NOTE=Yor059cp; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 10515935]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005585 // span:268-290 // numtm:1 S0005585 // YOR059C SGDID:S0005585, Chr XV from 440259-438907, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017504 // cdna:Genscan chromosome:SGD1:XV:438907:440259:-1 // ensembl // 11 // --- /// GENEFINDER00000022675 // cdna:GeneFinder chromosome:SGD1:XV:438907:440259:-1 // ensembl // 11 // --- /// YOR059C // cdna:known chromosome:SGD1:XV:438907:440259:-1 gene:YOR059C // ensembl // 11 // --- --- No cerevisiae_gene 1.21668957491455 2.31402974406905 1.13829489329338 2.15232225490466 1.03593900908083 Max fold change below threshold 4 2.31402974406905 Max fold change at or above threshold -0.887524071408912 0.976740356117111 0.747319735256419 -0.836536019964618 1082.76599121094 469.489494383621 0.43360199543999 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770407_at YKR056W.S1 tRNA methyltransferase, 5-methylates the uridine residue at position 54 of tRNAs and may also have a role in tRNA stabilization or maturation; previously thought to be an endo-exonuclease 2.3120787713969 665.258270263672 652.500579833984 TRM2 6400 // tRNA modification // inferred from direct assay --- 30696 // tRNA (m5U54) methyltransferase activity // inferred from direct assay /// 30696 // tRNA (m5U54) methyltransferase activity // inferred from mutant phenotype 574.01318359375 620.701110839844 709.8154296875 730.987976074219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR056W /GEN=TRM2 /DB_XREF=GI:42759862 /SEG=NC_001143:+549090,551009 /DEF=tRNA methyltransferase /NOTE=Trm2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: tRNA methyltransferase activity [goid GO:0008175] [evidence IDA] [pmid 10864043]; go_process: tRNA modification [goid GO:0006400] [evidence IDA] [pmid 10864043] --- --- --- --- --- --- S0001764 // TRM2 SGDID:S0001764, Chr XI from 549090-551009, Verified ORF // sgd // 11 // --- /// GENSCAN00000018465 // cdna:Genscan chromosome:SGD1:XI:549300:551009:1 // ensembl // 11 // --- /// GENEFINDER00000023067 // cdna:GeneFinder chromosome:SGD1:XI:549300:551009:1 // ensembl // 11 // --- /// YKR056W // cdna:known chromosome:SGD1:XI:549090:551009:1 gene:YKR056W // ensembl // 11 // --- --- No cerevisiae_gene 2.3120787713969 1.08133598422565 1.22897589187966 1.23658384506698 1.2734689672068 Max fold change below threshold 4 2.3120787713969 Max fold change at or above threshold -1.14593526051436 -0.515515659571532 0.687780709318598 0.973670210767293 658.879425048828 74.0584956055768 0.112400680291525 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774718_at YGR162W.S1 Translation initiation factor eIF4G, subunit of the mRNA cap-binding protein complex (eIF4F) that also contains eIF4E (Cdc33p); associates with the poly(A)-binding protein Pab1p, also interacts with eIF4A (Tif1p); homologous to Tif4632p 2.31203627160727 440.551315307617 774.739715576172 TIF4631 6413 // translational initiation // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5840 // ribosome // traceable author statement /// 16281 // eukaryotic translation initiation factor 4F complex // inferred from genetic interaction /// 16281 // eukaryotic translation initiation factor 4F complex // inferred from mutant phenotype /// 16281 // eukaryotic translation initiation factor 4F complex // inferred from sequence similarity 3743 // translation initiation factor activity // traceable author statement 732.793273925781 362.671600341797 518.431030273438 816.686157226563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR162W /GEN=TIF4631 /DB_XREF=GI:6321601 /SEG=NC_001139:+824062,826920 /DEF=also called eIF4 (eIF-4) gamma /NOTE=Tif4631p; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 9841679]; go_function: translation initiation factor activity [goid GO:0003743] [evidence TAS] [pmid 9841679]; go_process: translational initiation [goid GO:0006413] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0003394 // TIF4631 SGDID:S0003394, Chr VII from 824064-826922, Verified ORF // sgd // 11 // --- /// GENSCAN00000019468 // cdna:Genscan chromosome:SGD1:VII:824064:826922:1 // ensembl // 11 // --- /// GENEFINDER00000021390 // cdna:GeneFinder chromosome:SGD1:VII:824064:826922:1 // ensembl // 11 // --- /// YGR162W // cdna:known chromosome:SGD1:VII:824064:826922:1 gene:YGR162W // ensembl // 11 // --- --- No cerevisiae_gene 2.31203627160727 -2.0205422019126 1.0217397261472 -1.41348266429824 1.1144836972252 Max fold change below threshold 4 2.31203627160727 Max fold change at or above threshold 0.607457578398337 -1.1890845113029 -0.433040237995657 1.01466717090022 607.645515441895 206.01892697406 0.339044593827437 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777077_at YNL245C.S1 Component of a complex containing Cef1p, involved in pre-mRNA splicing; has similarity to S. pombe Cwf25p 2.31199457886873 91.7380294799805 189.993621826172 CWC25 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 5681 // spliceosome complex // inferred from physical interaction --- 184.007247924805 103.887962341309 79.5880966186523 195.979995727539 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL245C /GEN=CWC25 /DB_XREF=GI:6324084 /SEG=NC_001146:-186345,186884 /DEF=Component of a complex containing Cef1p, involved in pre-mRNA splicing; has similarity to S. pombe Cwf25p /NOTE=Cwc25p; go_component: spliceosome complex [goid GO:0005681] [evidence IPI] [pmid 11884590]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 14690591] --- --- --- --- --- --- S0005189 // CWC25 SGDID:S0005189, Chr XIV from 186884-186345, reverse complement, Verified ORF // sgd // 11 // --- /// YNL245C // cdna:known chromosome:SGD1:XIV:186345:186884:-1 gene:YNL245C // ensembl // 11 // --- --- No cerevisiae_gene 1.25849427059186 -1.77120855754467 1.03493926038753 -2.31199457886873 1.06506671850028 Max fold change below threshold 4 2.31199457886873 Max fold change at or above threshold 0.746445143996952 -0.639801495894123 -1.06024467586646 0.953601027763627 140.865825653076 57.7958375356578 0.410289985294213 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771794_at YEL030W.S1 Heat shock protein of the Hsp70 family, localized in mitochondrial nucleoids, plays a role in protein translocation, interacts with Mge1p in an ATP-dependent manner; overexpression induces extensive mitochondrial DNA aggregations 2.31190250308593 87.6261863708496 173.135330200195 ECM10 6626 // protein-mitochondrial targeting // inferred from genetic interaction /// 42026 // protein refolding // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay /// 42645 // mitochondrial nucleoid // inferred from direct assay --- 165.228164672852 71.4684829711914 103.783889770508 181.042495727539 0.00195312988944352 0.00415039015933871 0.00585938012227416 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL030W /GEN=ECM10 /DB_XREF=GI:6320805 /SEG=NC_001137:+94644,96578 /DEF=Heat shock protein of the Hsp70 family, localized in mitochondrial nucleoids, plays a role in protein translocation, interacts with Mge1p in an ATP-dependent manner; overexpression induces extensive mitochondrial DNA aggregations /NOTE=Ecm10p; go_component: mitochondrial nucleoid [goid GO:0042645] [evidence IDA] [pmid 12943685]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11150530]; go_function: heat shock protein activity [goid GO:0003773] [evidence IGI,ISS] [pmid 11150530]; go_process: protein-mitochondrial targeting [goid GO:0006626] [evidence IGI] [pmid 11150530] --- --- --- --- --- --- S0000756 // ECM10 SGDID:S0000756, Chr V from 94644-96578, Verified ORF // sgd // 11 // --- /// GENSCAN00000016778 // cdna:Genscan chromosome:SGD1:V:94644:96578:1 // ensembl // 11 // --- /// GENEFINDER00000019716 // cdna:GeneFinder chromosome:SGD1:V:94773:96578:1 // ensembl // 11 // --- /// YEL030W // cdna:known chromosome:SGD1:V:94644:96578:1 gene:YEL030W // ensembl // 11 // --- --- No cerevisiae_gene -2.16354685728152 -2.31190250308593 2.24014218915032 -1.59204058585791 1.09571207842198 Max fold change below threshold 4 2.31190250308593 Max fold change at or above threshold 0.676552890825086 -1.14376575765726 -0.516370948262903 0.983583815095081 130.380758285522 51.5072906492664 0.395052853861073 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1772374_at YJR054W.S1 Vacuolar protein of unknown function; potential Cdc28p substrate 2.31125287538715 115.310050964355 270.720733642578 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 261.254364013672 117.584281921387 113.035820007324 280.187103271484 0.000732421991415322 0.000732421991415322 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR054W /GEN=BFA1 /DB_XREF=GI:6322514 /SEG=NC_001142:+535970,537463 /DEF=Vacuolar protein of unknown function; potential Cdc28p substrate /NOTE=Yjr054wp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003815 // span:31-53,81-100,222-244 // numtm:3 S0003815 // YJR054W SGDID:S0003815, Chr X from 535970-537463, Uncharacterized ORF // sgd // 9 // --- /// GENSCAN00000024175 // cdna:Genscan chromosome:SGD1:X:536621:537463:1 // ensembl // 9 // --- /// YJR054W // cdna:known chromosome:SGD1:X:535970:537463:1 gene:YJR054W // ensembl // 9 // --- --- No cerevisiae_gene -1.35679846404175 -2.22184768018857 -1.48018241233834 -2.31125287538715 1.07246860479935 Max fold change below threshold 4 2.31125287538715 Max fold change at or above threshold 0.757555640891648 -0.837399241760843 -0.887894038121667 0.967737638990862 193.015392303467 90.0778345863643 0.466687311884123 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773771_at YHL029C.S1 Cytoplasmic protein required for replication of Brome mosaic virus in S. cerevisiae, which is a model system for studying replication of positive-strand RNA viruses in their natural hosts 2.31081974098175 320.291366577148 687.653381347656 --- 8152 // metabolism // traceable author statement 5737 // cytoplasm // inferred from direct assay --- 651.493835449219 358.650817871094 281.931915283203 723.812927246094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL029C /GEN=ECM29 /DB_XREF=GI:6321758 /SEG=NC_001140:-45927,47966 /DEF=Hypothetical ORF /NOTE=Yhl029cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: metabolism [goid GO:0008152] [evidence TAS] [pmid 14656964] --- --- --- --- --- --- S0001021 // YHL029C SGDID:S0001021, Chr VIII from 47966-45927, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016527 // cdna:Genscan chromosome:SGD1:VIII:45927:47966:-1 // ensembl // 11 // --- /// GENEFINDER00000020290 // cdna:GeneFinder chromosome:SGD1:VIII:45927:47945:-1 // ensembl // 11 // --- /// YHL029C // cdna:known chromosome:SGD1:VIII:45927:47966:-1 gene:YHL029C // ensembl // 11 // --- --- No cerevisiae_gene -1.0646650293509 -1.81651289495561 1.00488370186644 -2.31081974098175 1.11100502853877 Max fold change below threshold 4 2.31081974098175 Max fold change at or above threshold 0.681644500694108 -0.67147951588592 -1.02597043213132 1.01580544732314 503.972373962402 216.419939332889 0.429428180023683 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-Scv2-r2-Ec-bioD-5_at AFFX-Scv2-r2-Ec-bioD-5 --- 2.31046202268756 --- --- --- --- 1575.31091308594 2027.55249023438 681.81640625 852.198669433594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5024-5244 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --- --- --- --- --- --- AFFX-Scv2-r2-Ec-bioD-5 // --- // affx // --- // --- --- AFFX_control No -1.92373539220326 1.28708083806931 -1.79497478714231 -2.31046202268756 -1.84852543143837 Max fold change below threshold 4 2.31046202268756 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770055_at YMR306W.S1 Protein of unknown function, has similarity to 1,3-beta-D-glucan synthase catalytic subunits Fks1p and Gsc2p 2.30863576641074 177.210250854492 88.2975769042969 FKS3 --- 5739 // mitochondrion // inferred from direct assay 3843 // 1,3-beta-glucan synthase activity // inferred from sequence similarity 89.5798721313477 206.80729675293 147.613204956055 87.0152816772461 0.00585938012227416 0.000732421991415322 0.000732421991415322 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR306W /GEN=FKS3 /DB_XREF=GI:6323965 /SEG=NC_001145:+881158,886515 /DEF=Protein of unknown function, has similarity to 1,3-beta-D-glucan synthase catalytic subunits Fks1p and Gsc2p /NOTE=Fks3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: 1,3-beta-glucan synthase activity [goid GO:0003843] [evidence ISS] [pmid 7565718]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004923 // span:337-356,377-399,414-436,443-465,506-528,579-601,1212-1234,1267-1289,1304-1326,1358-1380,1385-1407,1473-1495,1515-1537,1550-1569,1584-1606,1648-1670,1674-1691,1712-1734 // numtm:18 S0004923 // FKS3 SGDID:S0004923, Chr XIII from 881158-886515, Verified ORF // sgd // 11 // --- /// GENSCAN00000018972 // cdna:Genscan chromosome:SGD1:XIII:881158:886515:1 // ensembl // 11 // --- /// YMR306W // cdna:known chromosome:SGD1:XIII:881158:886515:1 gene:YMR306W // ensembl // 11 // --- YMR306C-A // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene -1.29108152561521 2.30863576641074 1.49621446754322 1.64783897815365 -1.0294728742431 Max fold change below threshold 4 2.30863576641074 Max fold change at or above threshold -0.76081406550329 1.30497060287006 0.261850806568093 -0.806007343934866 132.753913879395 56.747165576502 0.427461337434135 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1770660_at YDR397C.S1 Beta subunit of the NC2 dimeric histone-fold complex; represses RNA polymerase II transcription through binding to TBP and inhibition of TFIIA and TFIIB; homologous to the Dr1 subunit of the mammalian NC2 (negative cofactor2) 2.30781096701739 883.394775390625 526.448303222656 NCB2 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 5634 // nucleus // inferred from physical interaction 3714 // transcription corepressor activity // inferred from genetic interaction /// 3714 // transcription corepressor activity // inferred from mutant phenotype 494.510314941406 767.880493164063 998.909057617188 558.386291503906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR397C /GEN=NCB2 /DB_XREF=GI:6320605 /SEG=NC_001136:-1266354,1266886 /DEF=Negative Cofactor B2 is the beta subunit of a negative regulator of RNA polymerase II holoenzyme. It is homologous to the Dr1 subunit of the mammalian NC2 (negative cofactor2) /NOTE=Ncb2p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 10713169]; go_function: transcription corepressor activity [goid GO:0003714] [evidence IGI,IMP] [pmid 10713169]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IGI,IMP] [pmid 10713169] --- --- --- --- --- --- S0002805 // NCB2 SGDID:S0002805, Chr IV from 1266888-1266852,1266759-1266356, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// Y09266 // S.cerevisiae mRNA for repressor of class II transcription (441 bp). // gb // 11 // --- /// GENSCAN00000025415 // cdna:Genscan chromosome:SGD1:IV:1266356:1266745:-1 // ensembl // 9 // --- /// YDR397C // cdna:known chromosome:SGD1:IV:1266356:1266888:-1 gene:YDR397C // ensembl // 11 // --- YDR396W // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene 2.30781096701739 1.55280986050826 1.29869081395009 2.0199964033825 1.12917016012107 Max fold change below threshold 4 2.30781096701739 Max fold change at or above threshold -0.922306544240684 0.275971281172972 1.28865089246492 -0.642315629397206 704.921539306641 228.135890045605 0.323633024846991 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769504_at YML019W.S1 Subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes asparagine-linked glycosylation of newly synthesized proteins; similar to and partially functionally redundant with Ost3p 2.30716344618429 213.082427978516 426.733489990234 OST6 6461 // protein complex assembly // inferred from mutant phenotype /// 18279 // N-linked glycosylation via asparagine // inferred from genetic interaction /// 18279 // N-linked glycosylation via asparagine // inferred from mutant phenotype 8250 // oligosaccharyl transferase complex // inferred from physical interaction 4579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from physical interaction 379.419464111328 164.452789306641 261.712066650391 474.047515869141 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML019W /GEN=OST6 /DB_XREF=GI:6323622 /SEG=NC_001145:+233457,234455 /DEF=Subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes aspargine-linked glycosylation of newly synthesized proteins; similar to and partially functionally redundant with Ost3p /NOTE=Ost6p; go_component: oligosaccharyl transferase complex [goid GO:0008250] [evidence IPI] [pmid 10358084]; go_function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity [goid GO:0004579] [evidence IPI] [pmid 10358084]; go_process: N-linked glycosylation via asparagine [goid GO:0018279] [evidence IGI,IMP] [pmid 10358084]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP] [pmid 10358084] --- --- --- --- --- S0004481 // span:189-208,215-234,266-288,301-323 // numtm:4 S0004481 // OST6 SGDID:S0004481, Chr XIII from 233457-234455, Verified ORF // sgd // 11 // --- /// YML019W // cdna:known chromosome:SGD1:XIII:233457:234455:1 gene:YML019W // ensembl // 11 // --- --- No cerevisiae_gene 1.63040990629879 -2.30716344618429 1.39792759758307 -1.44975915313136 1.24940220707825 Max fold change below threshold 4 2.30716344618429 Max fold change at or above threshold 0.440107350763785 -1.14964262361457 -0.430377957099329 1.13991322995011 319.907958984375 135.220429796671 0.422685419349868 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778973_at YDR406W.S1 ATP binding cassette (ABC) transporter of the plasma membrane; general stress response factor implicated in cellular detoxification; target of Pdr1p, Pdr3p and Pdr8p transcription regulators; promoter contains a PDR responsive element 2.30689279802475 4775.69445800781 2481.66040039063 PDR15 6810 // transport // inferred from sequence similarity 16021 // integral to membrane // inferred from sequence similarity 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from sequence similarity 2512.33837890625 5795.6953125 3755.69360351563 2450.982421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR406W /GEN=PDR15 /DB_XREF=GI:6320614 /SEG=NC_001136:+1279198,1283787 /DEF=ATP-binding cassette (ABC) protein and general stress response factor implicated in cellular detoxification /NOTE=Pdr15p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 9020838]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence ISS] [pmid 9020838]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 9020838] --- --- --- --- --- S0002814 // span:532-554,567-589,614-636,641-663,673-695,700-722,784-803,1221-1240,1305-1327,1339-1361,1371-1393,1492-1514 // numtm:12 S0002814 // PDR15 SGDID:S0002814, Chr IV from 1279200-1283789, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023725 // cdna:GeneFinder chromosome:SGD1:IV:1278766:1283883:1 // ensembl // 11 // --- /// GENSCAN00000025422 // cdna:Genscan chromosome:SGD1:IV:1279200:1283789:1 // ensembl // 11 // --- /// YDR406W // cdna:known chromosome:SGD1:IV:1279200:1283789:1 gene:YDR406W // ensembl // 11 // --- --- No cerevisiae_gene -1.26302090828548 2.30689279802475 1.10817568527515 1.49489958639675 -1.02503320973812 Max fold change below threshold 4 2.30689279802475 Max fold change at or above threshold -0.713432065498764 1.38490187551022 0.0811737362143906 -0.752643546225852 3628.67742919922 1564.74470980293 0.43121626001026 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771962_at YPR060C.S1 Chorismate mutase, catalyzes the conversion of chorismate to prephenate to initiate the tyrosine/phenylalanine-specific branch of aromatic amino acid biosynthesis 2.30675867203331 294.526962280273 654.283264160156 ARO7 9073 // aromatic amino acid family biosynthesis // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4106 // chorismate mutase activity // inferred from direct assay 613.23486328125 308.748382568359 280.305541992188 695.331665039063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR060C /GEN=ARO7 /DB_XREF=GI:6325317 /SEG=NC_001148:-674856,675626 /DEF=Chorismate mutase, catalyzes the conversion of chorismate to prephenate to initiate the tyrosine/phenylalanine-specific branch of aromatic amino acid biosynthesis /NOTE=Aro7p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: chorismate mutase activity [goid GO:0004106] [evidence IDA] [pmid 3027508]; go_process: aromatic amino acid family biosynthesis [goid GO:0009073] [evidence TAS] --- --- --- --- --- --- S0006264 // ARO7 SGDID:S0006264, Chr XVI from 675628-674858, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017231 // cdna:Genscan chromosome:SGD1:XVI:674858:675565:-1 // ensembl // 11 // --- /// YPR060C // cdna:known chromosome:SGD1:XVI:674858:675628:-1 gene:YPR060C // ensembl // 11 // --- --- No cerevisiae_gene 2.30675867203331 -1.9861961969808 -1.22185815170125 -2.18773720606046 1.1338749746199 Max fold change below threshold 4 2.30675867203331 Max fold change at or above threshold 0.658859218874372 -0.786174894866406 -0.921159130711721 1.04847480670375 474.405113220215 210.712313167931 0.444161134220576 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771530_at YCR093W.S1 Component of the CCR4-NOT complex, which has multiple roles in regulating mRNA levels including regulation of transcription and destabilizing mRNAs by deadenylation; basal transcription factor 2.30655192785088 863.420227050781 1603.43914794922 CDC39 74 // regulation of cell cycle // inferred from mutant phenotype /// 122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 288 // mRNA catabolism, deadenylylation-dependent decay // inferred from genetic interaction /// 288 // mRNA catabolism, deadenylylation-dependent decay // inferred from mutant phenotype /// 288 // mRNA catabolism, deadenylylation-dependent decay // inferred from direct assay /// 289 // poly(A) tail shortening // inferred from direct assay /// 749 // response to pheromone during conjugation with cellular fusion // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 30015 // CCR4-NOT core complex // inferred from physical interaction 175 // 3'-5'-exoribonuclease activity // inferred from direct assay 1641.42028808594 916.807067871094 810.033386230469 1565.4580078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR093W /GEN=CDC39 /DB_XREF=GI:10383811 /SEG=NC_001135:+280113,286439 /DEF=Component of the CCR4-NOT complex, which has multiple roles in regulating mRNA levels including regulation of transcription and destabilizing mRNAs by deadenylation; basal transcription factor /NOTE=Cdc39p; go_component: CCR4-NOT core complex [goid GO:0030015] [evidence IPI] [pmid 10490603]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11889048]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 7926748]; go_function: 3'-5'-exoribonuclease activity [goid GO:0000175] [evidence IDA] [pmid 11889048]; go_process: mRNA catabolism, deadenylation-dependent [goid GO:0000288] [evidence IDA,IGI,IMP] [pmid 11889048]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence TAS] [pmid 7926748]; go_process: poly(A) tail shortening [goid GO:0000289] [evidence IDA] [pmid 11889048]; go_process: regulation of cell cycle [goid GO:0000074] [evidence IMP] [pmid 2680756]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IPI] [pmid 10490603]; go_process: response to pheromone during conjugation with cellular fusion [goid GO:0000749] [evidence IMP] [pmid 2099190] --- --- --- --- --- --- S0000689 // CDC39 SGDID:S0000689, Chr III from 280113-286439, Verified ORF // sgd // 11 // --- /// GENSCAN00000022524 // cdna:Genscan chromosome:SGD1:III:280113:286439:1 // ensembl // 11 // --- /// GENEFINDER00000023407 // cdna:GeneFinder chromosome:SGD1:III:281673:286439:1 // ensembl // 11 // --- /// YCR093W // cdna:known chromosome:SGD1:III:280113:286439:1 gene:YCR093W // ensembl // 11 // --- --- No cerevisiae_gene -2.30655192785088 -1.79036609294195 -1.10728465925167 -2.02636127842134 -1.04852399738246 Max fold change below threshold 4 2.30655192785088 Max fold change at or above threshold 0.947523616102032 -0.735329218515383 -0.983302051191812 0.771107653605163 1233.4296875 430.586207723612 0.349096679030285 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774352_at SPBC3B8.04c.S1 --- 2.30622661563565 --- --- --- --- 1.19448304176331 2.75474858283997 2.45963048934937 0.607318043708801 0.919434010982513 0.870360970497131 0.870360970497131 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B8.04c /DEF=transporter --- --- --- --- --- --- SPBC3B8.04c // |||transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.88289574390641 2.30622661563565 -1.71686457201667 2.0591589862326 -1.96681632323778 Max fold change below threshold 1 2.30622661563565 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Sp-GPD3-M_s_at AFFX-r2-Sp-GPD3-M --- 2.30567369282882 --- --- --- --- 68.4846496582031 96.1871719360352 81.1955337524414 41.517333984375 0.111571997404099 0.111571997404099 0.129638999700546 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=GPD3 glyceraldehyde 3-phosphate dehydrogenase (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- X85332 // S.pombe mRNA for glyceraldehyde-3-phosphate dehydrogenase. // gb // 11 // --- /// SPBC354.12 // |gpd3||glyceraldehyde 3-phosphate dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPBC32F12.11 // |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- AFFX_control No 1.28145853246617 1.40450703064251 -2.30567369282882 1.18560194375932 -1.6495435300344 Max fold change below threshold 4 2.30567369282882 Max fold change at or above threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779597_at YKL184W.S1 Ornithine decarboxylase, catalyzes the first step in polyamine biosynthesis; degraded in a proteasome-dependent manner in the presence of excess polyamines 2.30529329012199 1429.49298095703 826.746459960938 SPE1 9446 // putrescine biosynthesis // inferred from mutant phenotype /// 15940 // pantothenate biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4586 // ornithine decarboxylase activity // inferred from direct assay 740.252563476563 1152.48669433594 1706.49926757813 913.240356445313 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL184W /GEN=SPE1 /DB_XREF=GI:6322664 /SEG=NC_001143:+96762,98162 /DEF=Rate limiting step of polyamine biosynthesis pathway /NOTE=Spe1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: ornithine decarboxylase activity [goid GO:0004586] [evidence IDA] [pmid 2681188]; go_process: pantothenate biosynthesis [goid GO:0015940] [evidence IMP] [pmid 11154694] --- --- --- --- --- --- S0001667 // SPE1 SGDID:S0001667, Chr XI from 96762-98162, Verified ORF // sgd // 11 // --- /// GENSCAN00000018281 // cdna:Genscan chromosome:SGD1:XI:96762:98162:1 // ensembl // 11 // --- /// GENEFINDER00000023172 // cdna:GeneFinder chromosome:SGD1:XI:96762:98162:1 // ensembl // 11 // --- /// YKL184W // cdna:known chromosome:SGD1:XI:96762:98162:1 gene:YKL184W // ensembl // 11 // --- --- No cerevisiae_gene 1.78645346610052 1.55688308450205 1.43463262528675 2.30529329012199 1.23368752977541 Max fold change below threshold 4 2.30529329012199 Max fold change at or above threshold -0.9212929701096 0.0578783775103149 1.37381317604106 -0.510398583441777 1128.11972045898 421.003057188508 0.37319005204272 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776557_at SPAPB8E5.09.S1 --- 2.30519452191302 --- --- --- --- 13.5808534622192 11.5044078826904 16.1694660186768 8.34099102020264 0.0805663987994194 0.030273400247097 0.0375977009534836 0.00195312988944352 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB8E5.09 /DEF=AAA family ATPase --- --- --- --- --- --- SPAPB8E5.09 // |||AAA family ATPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.0623875360556 -1.18049130391604 -2.30519452191302 1.19060750222059 -1.6282062202591 Max fold change below threshold 4 2.30519452191302 Max fold change at or above threshold APPMPP No 3 0 APPP 1 3 0 No No 2 < x = 3
1773261_at YIL079C.S1 RING finger protein that interacts with the arginine methyltransferase Hmt1p to regulate methylation of Npl3p, which modulates Npl3p function in mRNA processing and export; has similarity to Air2p 2.30505382246954 100.645477294922 218.745811462402 AIR1 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 16075 // rRNA catabolism // inferred from genetic interaction /// 16077 // snoRNA catabolism // inferred from genetic interaction /// 16078 // tRNA catabolism // inferred from direct assay 5634 // nucleus // inferred from physical interaction /// 5730 // nucleolus // inferred from direct assay /// 31499 // TRAMP complex // inferred from direct assay /// 31499 // TRAMP complex // inferred from physical interaction --- 220.849487304688 95.8109893798828 105.479965209961 216.642135620117 0.000244141003349796 0.00292969006113708 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL079C /GEN=AIR1 /DB_XREF=GI:6322111 /SEG=NC_001141:-210920,212002 /DEF=arginine methyltransferase-interacting RING finger protein /NOTE=Air1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11489916]; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 10896665]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 10896665] --- --- --- --- --- --- S0001341 // AIR1 SGDID:S0001341, Chr IX from 212002-210920, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016416 // cdna:Genscan chromosome:SGD1:IX:210920:212002:-1 // ensembl // 11 // --- /// YIL079C // cdna:known chromosome:SGD1:IX:210920:212002:-1 gene:YIL079C // ensembl // 11 // --- --- No cerevisiae_gene 1.10044023625925 -2.30505382246954 1.0103768297462 -2.09375768057072 -1.01942074505741 Max fold change below threshold 4 2.30505382246954 Max fold change at or above threshold 0.895095608626662 -0.935065915926294 -0.793543202204291 0.833513509503923 159.695644378662 68.3210177065367 0.427820169876001 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774873_at YKR017C.S1 Hypothetical protein 2.30489655909808 115.099559783936 218.306983947754 --- --- --- --- 204.101287841797 92.1108016967773 138.088317871094 232.512680053711 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR017C /GEN=YPT52 /DB_XREF=GI:6322869 /SEG=NC_001143:-471337,472992 /DEF=Hypothetical ORF /NOTE=Ykr017cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.5.Prefoldin // All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin // 0.560000002384186 --- S0001725 // YKR017C SGDID:S0001725, Chr XI from 472992-471337, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018431 // cdna:Genscan chromosome:SGD1:XI:471337:472992:-1 // ensembl // 11 // --- /// GENEFINDER00000023051 // cdna:GeneFinder chromosome:SGD1:XI:471337:472791:-1 // ensembl // 11 // --- /// YKR017C // cdna:known chromosome:SGD1:XI:471337:472992:-1 gene:YKR017C // ensembl // 11 // --- --- No cerevisiae_gene -2.30489655909808 -2.21582359595224 1.26387640174755 -1.47804891093196 1.13920241519464 Max fold change below threshold 4 2.30489655909808 Max fold change at or above threshold 0.588565942096676 -1.17392825080897 -0.450339059879629 1.03570136859192 166.703271865845 63.5409107138062 0.38116174927233 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772317_at YGR264C.S1 Methionyl-tRNA synthetase, forms a complex with glutamyl-tRNA synthetase (Gus1p) and Arc1p, which increases the catalytic efficiency of both tRNA synthetases; also has a role in nuclear export of tRNAs 2.30427582626004 1018.32122802734 1016.27114868164 MES1 6431 // methionyl-tRNA aminoacylation // inferred from direct assay 5737 // cytoplasm // inferred from direct assay /// 17102 // methionyl glutamyl tRNA synthetase complex // inferred from direct assay 4825 // methionine-tRNA ligase activity // inferred from direct assay 945.568054199219 1067.44445800781 969.197998046875 1086.97424316406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR264C /GEN=MES1 /DB_XREF=GI:6321704 /SEG=NC_001139:-1019603,1021858 /DEF=Methionyl-tRNA synthetase, forms a complex with glutamyl-tRNA synthetase (Ygl245wp) and Arc1p, which increases the catalytic efficiency of both tRNA synthetases; also has a role in nuclear export of tRNAs /NOTE=Mes1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 3905796]; go_component: methionyl glutamyl tRNA synthetase complex [goid GO:0017102] [evidence IDA] [pmid 11069915]; go_function: methionine-tRNA ligase activity [goid GO:0004825] [evidence IDA] [pmid 3312199]; go_process: methionyl-tRNA aminoacylation [goid GO:0006431] [evidence IDA] [pmid 3312199] --- --- --- --- --- --- S0003496 // MES1 SGDID:S0003496, Chr VII from 1021859-1019604, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019545 // cdna:Genscan chromosome:SGD1:VII:1019604:1021859:-1 // ensembl // 11 // --- /// GENEFINDER00000021386 // cdna:GeneFinder chromosome:SGD1:VII:1019604:1021859:-1 // ensembl // 11 // --- /// YGR264C // cdna:known chromosome:SGD1:VII:1019604:1021859:-1 gene:YGR264C // ensembl // 11 // --- --- No cerevisiae_gene 2.30427582626004 1.12889226033742 1.05980821171343 1.02499020958113 1.14954628420119 Max fold change below threshold 4 2.30427582626004 Max fold change at or above threshold -1.02024702527334 0.713299231033237 -0.684139301269831 0.991087095509935 1017.29618835449 70.3046736510271 0.0691093453960022 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770463_at YHR166C.S1 Subunit of the anaphase-promoting complex/cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition 2.30304615699511 125.927097320557 204.632507324219 CDC23 22 // mitotic spindle elongation // traceable author statement /// 70 // mitotic sister chromatid segregation // traceable author statement /// 7091 // mitotic metaphase/anaphase transition // traceable author statement /// 8054 // cyclin catabolism // traceable author statement /// 16567 // protein ubiquitination // inferred from physical interaction /// 31145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from direct assay /// 31145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from physical interaction 5680 // anaphase-promoting complex // traceable author statement 4842 // ubiquitin-protein ligase activity // traceable author statement /// 5515 // protein binding // traceable author statement 188.342742919922 81.7798385620117 170.074356079102 220.922271728516 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR166C /GEN=CDC23 /DB_XREF=GI:6321960 /SEG=NC_001140:-437170,439050 /DEF=Subunit of the anaphase-promoting complex/cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition /NOTE=Cdc23p; go_component: anaphase-promoting complex [goid GO:0005680] [evidence TAS] [pmid 10465783]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 10465783]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 10465783]; go_process: cyclin catabolism [goid GO:0008054] [evidence TAS] [pmid 10465783]; go_process: mitotic metaphase/anaphase transition [goid GO:0007091] [evidence TAS] [pmid 10465783]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence TAS] [pmid 10465783]; go_process: mitotic spindle elongation [goid GO:0000022] [evidence TAS] [pmid 10465783]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10465783] --- --- --- --- --- --- S0001209 // CDC23 SGDID:S0001209, Chr VIII from 439051-437171, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016692 // cdna:Genscan chromosome:SGD1:VIII:437171:439051:-1 // ensembl // 11 // --- /// GENEFINDER00000020274 // cdna:GeneFinder chromosome:SGD1:VIII:437171:439051:-1 // ensembl // 11 // --- /// YHR166C // cdna:known chromosome:SGD1:VIII:437171:439051:-1 gene:YHR166C // ensembl // 11 // --- --- No cerevisiae_gene -1.8556567121602 -2.30304615699511 1.08516701057989 -1.10741411734244 1.1729800060438 Max fold change below threshold 4 2.30304615699511 Max fold change at or above threshold 0.387567467893202 -1.40319788740396 0.0805713846987104 0.93505903481205 165.279802322388 59.5069052696895 0.360037369560848 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779413_at YNL277W.S1 L-homoserine-O-acetyltransferase, catalyzes the conversion of homoserine to O-acetyl homoserine which is the first step of the methionine biosynthetic pathway 2.30276834618703 667.596801757813 1495.24157714844 MET2 9086 // methionine biosynthesis // traceable author statement /// 9092 // homoserine metabolism // traceable author statement 5737 // cytoplasm // inferred from direct assay 4414 // homoserine O-acetyltransferase activity // inferred from direct assay 1497.36401367188 684.948425292969 650.245178222656 1493.119140625 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL277W /GEN=MET2 /DB_XREF=GI:6324052 /SEG=NC_001146:+117347,118807 /DEF=L-homoserine-O-acetyltransferase, catalyzes the conversion of homoserine to O-acetyl homoserine which is the first step of the methionine biosynthetic pathway /NOTE=Met2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: homoserine O-acetyltransferase activity [goid GO:0004414] [evidence IDA] [pmid 3542717]; go_process: homoserine metabolism [goid GO:0009092] [evidence TAS] [pmid 8987848]; go_process: methionine biosynthesis [goid GO:0009086] [evidence TAS] [pmid 8987848] --- --- --- --- --- --- S0005221 // MET2 SGDID:S0005221, Chr XIV from 117347-118807, Verified ORF // sgd // 11 // --- /// GENSCAN00000019820 // cdna:Genscan chromosome:SGD1:XIV:117347:118807:1 // ensembl // 11 // --- /// GENEFINDER00000020583 // cdna:GeneFinder chromosome:SGD1:XIV:117347:118807:1 // ensembl // 11 // --- /// YNL277W // cdna:known chromosome:SGD1:XIV:117347:118807:1 gene:YNL277W // ensembl // 11 // --- YNL276C // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene -1.6236336369328 -2.18609746132553 -1.0014560882245 -2.30276834618703 -1.00284295668804 Max fold change below threshold 4 2.30276834618703 Max fold change at or above threshold 0.870079061134216 -0.829342956473994 -0.901935682410564 0.861199577750342 1081.41918945313 478.054056003294 0.442061746883784 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772915_at YAL054C.S1 Acetyl-coA synthetase isoform, expressed during growth on nonfermentable carbon sources and under aerobic conditions 2.30263896346252 6918.06274414063 3593.20373535156 ACS1 6085 // acetyl-CoA biosynthesis // inferred from direct assay /// 19654 // acetate fermentation // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 3987 // acetate-CoA ligase activity // inferred from direct assay 3537.5439453125 8145.6865234375 5690.43896484375 3648.86352539063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL054C /GEN=ACS1 /DB_XREF=GI:6319264 /SEG=NC_001133:-42882,45023 /DEF=one of 2 acetyl-coA synthetases in yeast /NOTE=Acs1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 9711835]; go_function: acetate-CoA ligase activity [goid GO:0003987] [evidence IDA] [pmid 8910545]; go_process: acetate fermentation [goid GO:0019654] [evidence IMP] [pmid 1363452]; go_process: acetyl-CoA biosynthesis [goid GO:0006085] [evidence IDA] [pmid 8910545] --- --- --- ec // AC2L_HUMAN // (Q9NUB1) Acetyl-coenzyme A synthetase 2-like, mitochondrial precursor (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acetyl-CoA synthetase 2) // 0.0 --- --- S0000050 // ACS1 SGDID:S0000050, Chr I from 45023-42882, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018178 // cdna:GeneFinder chromosome:SGD1:I:42882:44951:-1 // ensembl // 11 // --- /// GENSCAN00000020331 // cdna:Genscan chromosome:SGD1:I:42882:45023:-1 // ensembl // 11 // --- /// YAL054C // cdna:known chromosome:SGD1:I:42882:45023:-1 gene:YAL054C // ensembl // 11 // --- --- No cerevisiae_gene 1.03902364287104 2.30263896346252 1.18551737845571 1.60858467140288 1.03146804161278 Max fold change below threshold 4 2.30263896346252 Max fold change at or above threshold -0.793198893346284 1.33426538059627 0.200738937775519 -0.741805425025506 5255.63323974609 2166.02583393108 0.412134130203446 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772312_at YLR415C.S1 Hypothetical protein 2.30172107144921 81.2026138305664 43.1038131713867 --- --- --- --- 39.3360748291016 71.8645553588867 90.5406723022461 46.8715515136719 0.0676269978284836 0.014160200022161 0.00805663969367743 0.0375977009534836 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR415C /GEN=CTR3 /DB_XREF=GI:6323447 /SEG=NC_001144:-954255,954593 /DEF=Hypothetical ORF /NOTE=Ylr415cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004407 // YLR415C SGDID:S0004407, Chr XII from 954593-954255, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// YLR415C // cdna:known chromosome:SGD1:XII:954255:954593:-1 gene:YLR415C // ensembl // 10 // --- YLR416C // ensembl // 2 // Cross Hyb Matching Probes No cerevisiae_gene -1.56344862113437 1.82693763094329 1.70870900633803 2.30172107144921 1.19156656370288 Max fold change below threshold 4 2.30172107144921 Max fold change at or above threshold -0.97165814277224 0.413553361321088 1.20886785558544 -0.650763074134283 62.1532135009766 23.4826814776392 0.377819265568147 AAPPPP Called_P_>2EXP 4 0 APPP 1 3 0 Yes Yes 2 < x = 3
1777947_at YDR425W.S1 Sorting nexin, involved in the retrieval of late-Golgi SNAREs from the post-Golgi endosome to the trans-Golgi network; forms a complex with Snx4p and Atg20p 2.30092054837818 342.957565307617 795.895294189453 SNX41 15031 // protein transport // inferred from direct assay 5768 // endosome // inferred from direct assay 8565 // protein transporter activity // inferred from direct assay 764.239440917969 332.145080566406 353.770050048828 827.551147460938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR425W /GEN=SNX41 /DB_XREF=GI:6320633 /SEG=NC_001136:+1320052,1321929 /DEF=sorting nexins Snx4p, Snx41p, and Snx42p mediate distinct retrieval pathways from endosomes. /NOTE=Snx41p; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 12554655]; go_function: protein transporter activity [goid GO:0008565] [evidence IDA] [pmid 12554655]; go_process: protein transport [goid GO:0015031] [evidence IDA] [pmid 12554655] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 3.59999990463257 --- S0002833 // SNX41 SGDID:S0002833, Chr IV from 1320054-1321931, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023620 // cdna:GeneFinder chromosome:SGD1:IV:1320054:1321931:1 // ensembl // 11 // --- /// GENSCAN00000025436 // cdna:Genscan chromosome:SGD1:IV:1320054:1321931:1 // ensembl // 11 // --- /// YDR425W // cdna:known chromosome:SGD1:IV:1320054:1321931:1 gene:YDR425W // ensembl // 11 // --- YDR426C // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene -1.92338576012707 -2.30092054837818 -1.14894203693264 -2.16027173813184 1.08284276256002 Max fold change below threshold 4 2.30092054837818 Max fold change at or above threshold 0.740941739986479 -0.902463622290804 -0.82021633080202 0.981738213106345 569.426429748535 262.926220316578 0.461738701578514 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778177_at YGL035C.S1 Transcription factor involved in glucose repression; C2H2 zinc finger protein similar to mammalian Egr and Wilms tumor proteins 2.30089695678451 257.732940673828 483.007049560547 MIG1 6006 // glucose metabolism // traceable author statement /// 6357 // regulation of transcription from RNA polymerase II promoter // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3704 // specific RNA polymerase II transcription factor activity // traceable author statement 467.985961914063 257.454406738281 258.011474609375 498.028137207031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL035C /GEN=MIG1 /DB_XREF=GI:6321403 /SEG=NC_001139:-431551,433065 /DEF=Transcription factor involved in glucose repression /NOTE=Mig1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence TAS] [pmid 9832517]; go_process: glucose metabolism [goid GO:0006006] [evidence TAS] [pmid 9832517]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence TAS] [pmid 9832517] --- --- --- --- --- --- S0003003 // MIG1 SGDID:S0003003, Chr VII from 433067-431553, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000019318 // cdna:Genscan chromosome:SGD1:VII:431553:433067:-1 // ensembl // 10 // --- /// GENEFINDER00000021534 // cdna:GeneFinder chromosome:SGD1:VII:431553:433067:-1 // ensembl // 10 // --- /// YGL035C // cdna:known chromosome:SGD1:VII:431553:433067:-1 gene:YGL035C // ensembl // 10 // --- --- No cerevisiae_gene 2.30089695678451 -1.81774306310398 -1.16017249728794 -1.8138184071952 1.06419460782562 Max fold change below threshold 4 2.30089695678451 Max fold change at or above threshold 0.747217719672336 -0.864331228102404 -0.860067059053015 0.977180567483083 370.369995117188 130.63925577097 0.352726347958167 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773194_at YOR297C.S1 mitochondrial inner membrane translocase 2.3005227810488 400.420074462891 463.172119140625 TIM18 6612 // protein-membrane targeting // inferred from physical interaction /// 6612 // protein-membrane targeting // inferred from genetic interaction /// 6626 // protein-mitochondrial targeting // inferred from genetic interaction /// 6626 // protein-mitochondrial targeting // inferred from physical interaction 42721 // mitochondrial inner membrane protein insertion complex // inferred from direct assay 8565 // protein transporter activity // inferred from physical interaction 462.829742431641 371.092803955078 429.747344970703 463.514495849609 0.000732421991415322 0.00122069998178631 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR297C /GEN=TIM18 /DB_XREF=GI:6324871 /SEG=NC_001147:-874740,875318 /DEF=mitochondrial inner membrane translocase /NOTE=Tim18p; go_component: mitochondrial inner membrane protein insertion complex [goid GO:0042721] [evidence IDA] [pmid 10637294]; go_function: protein transporter activity [goid GO:0008565] [evidence IPI] [pmid 10637294]; go_process: protein-membrane targeting [goid GO:0006612] [evidence IGI,IPI] [pmid 10637294]; go_process: protein-mitochondrial targeting [goid GO:0006626] [evidence IGI,IPI] [pmid 10637294] --- --- --- --- --- --- S0005823 // TIM18 SGDID:S0005823, Chr XV from 875318-874740, reverse complement, Verified ORF // sgd // 11 // --- /// YOR297C // cdna:known chromosome:SGD1:XV:874740:875318:-1 gene:YOR297C // ensembl // 11 // --- GENEFINDER00000022899 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 2.3005227810488 -1.24720753811132 1.42045805734602 -1.07698103978558 1.00147949311635 Max fold change below threshold 4 2.3005227810488 Max fold change at or above threshold 0.714583660562534 -1.39775976460886 -0.0471747535071915 0.73035085755352 431.796096801758 43.4289885742035 0.100577538555524 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778191_at YGR042W.S1 Hypothetical protein 2.30005859261888 101.832187652588 190.568954467773 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 216.952423095703 94.3247375488281 109.339637756348 164.185485839844 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR042W /GEN=BUD9 /DB_XREF=GI:6321479 /SEG=NC_001139:+579478,580293 /DEF=Hypothetical ORF /NOTE=Ygr042wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003274 // YGR042W SGDID:S0003274, Chr VII from 579480-580295, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019375 // cdna:Genscan chromosome:SGD1:VII:579480:580295:1 // ensembl // 11 // --- /// GENEFINDER00000021539 // cdna:GeneFinder chromosome:SGD1:VII:579480:580295:1 // ensembl // 11 // --- /// YGR042W // cdna:known chromosome:SGD1:VII:579480:580295:1 gene:YGR042W // ensembl // 11 // --- --- No cerevisiae_gene -1.88878291733539 -2.30005859261888 -1.09963119779279 -1.98420652882681 -1.32138612609967 Max fold change below threshold 4 2.30005859261888 Max fold change at or above threshold 1.26537011610886 -0.927779663499791 -0.659243851752943 0.321653399143874 146.200571060181 55.9139584022195 0.38244692203838 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Sc-WBP1-M_at AFFX-r2-Sc-WBP1-M Beta subunit of the oligosaccharyl transferase (OST) glycoprotein complex; required for N-linked glycosylation of proteins in the endoplasmic reticulum 2.2995703849293 445.142639160156 826.228729248047 WBP1 6487 // N-linked glycosylation // inferred from physical interaction /// 7049 // cell cycle // inferred from direct assay 5635 // nuclear membrane // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 8250 // oligosaccharyl transferase complex // inferred from physical interaction 4579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from physical interaction 812.368713378906 353.269775390625 537.015502929688 840.088745117188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=WBP1 SGD:YEL002C Oligosaccharyltransferase beta subunit (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- S0000728 // span:393-415 // numtm:1 S0000728 // WBP1 SGDID:S0000728, Chr V from 150013-148721, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016801 // cdna:Genscan chromosome:SGD1:V:148721:150013:-1 // ensembl // 11 // --- /// GENEFINDER00000019675 // cdna:GeneFinder chromosome:SGD1:V:148721:150013:-1 // ensembl // 11 // --- /// YEL002C // cdna:known chromosome:SGD1:V:148721:150013:-1 gene:YEL002C // ensembl // 11 // --- --- AFFX_control cerevisiae_gene 1.09793056254808 -2.2995703849293 1.01348197113281 -1.51274722786778 1.03412247576964 Max fold change below threshold 4 2.2995703849293 Max fold change at or above threshold 0.759170631682244 -1.21348306564814 -0.423965471931021 0.878277905896919 635.685684204102 232.731643982715 0.366111192631469 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 No No 3 < x
1770777_at YPR187W.S1 RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III; part of central core; similar to bacterial omega subunit 2.29952361201834 487.117935180664 1133.24365234375 RPO26 6360 // transcription from RNA polymerase I promoter // traceable author statement /// 6366 // transcription from RNA polymerase II promoter // traceable author statement /// 6383 // transcription from RNA polymerase III promoter // traceable author statement 5665 // DNA-directed RNA polymerase II, core complex // traceable author statement /// 5666 // DNA-directed RNA polymerase III complex // traceable author statement /// 5736 // DNA-directed RNA polymerase I complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 1044.78393554688 519.887878417969 454.347991943359 1221.70336914063 0.000732421991415322 0.00122069998178631 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR187W /GEN=RPO26 /DB_XREF=GI:6325445 /SEG=NC_001148:+911251,911794 /DEF=subunit common to RNA polymerases I, II, and III /NOTE=Rpo26p; go_component: DNA-directed RNA polymerase I complex [goid GO:0005736] [evidence TAS] [pmid 9774381]; go_component: DNA-directed RNA polymerase II, core complex [goid GO:0005665] [evidence TAS] [pmid 9774381]; go_component: DNA-directed RNA polymerase III complex [goid GO:0005666] [evidence TAS] [pmid 9774381]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 9774381]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence TAS]; go_process: transcription from Pol III promoter [goid GO:0006383] [evidence TAS] --- --- --- --- --- --- S0006391 // RPO26 SGDID:S0006391, Chr XVI from 911253-911272,911349-911796, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020950 // cdna:GeneFinder chromosome:SGD1:XVI:911253:911796:1 // ensembl // 11 // --- /// YPR187W // cdna:known chromosome:SGD1:XVI:911253:911796:1 gene:YPR187W // ensembl // 11 // --- --- No cerevisiae_gene 1.22756987779929 -2.00963318999892 -1.17469217045963 -2.29952361201834 1.16933590532395 Max fold change below threshold 4 2.29952361201834 Max fold change at or above threshold 0.615902375094569 -0.762104440177312 -0.934165954085726 1.08036801916847 810.180793762207 380.909623458825 0.470153855030318 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776970_at SPCC1281.08.S1 --- 2.29821073065726 --- --- --- --- 7.69279193878174 17.6796569824219 16.9645824432373 7.84296083450317 0.0375977009534836 0.00292969006113708 0.030273400247097 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1281.08 /GEN=wtf11 /DEF=wtf element --- --- --- --- --- --- SPCC1281.08 // |wtf11|meu24|wtf element|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.32634710157843 2.29821073065726 1.75490080737849 2.20525689219718 1.01952072757413 Max fold change below threshold 4 2.29821073065726 Max fold change at or above threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1777456_at YKL215C.S1 Hypothetical protein 2.29778477668068 414.890167236328 229.804946899414 --- --- 5737 // cytoplasm // inferred from direct assay --- 224.935272216797 312.927490234375 516.852844238281 234.674621582031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL215C /GEN=URA1 /DB_XREF=GI:6322634 /SEG=NC_001143:-26828,30688 /DEF=Hypothetical ORF /NOTE=Ykl215cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.10.Epsilon subunit of F1F0-ATP synthase C-terminal domain // All alpha proteins; Long alpha-hairpin; Epsilon subunit of F1F0-ATP synthase C-terminal domain; Epsilon subunit of F1F0-ATP synthase C-terminal domain // 3.40000009536743 --- S0001698 // YKL215C SGDID:S0001698, Chr XI from 30688-26828, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018257 // cdna:Genscan chromosome:SGD1:XI:26828:30688:-1 // ensembl // 11 // --- /// GENEFINDER00000022935 // cdna:GeneFinder chromosome:SGD1:XI:26828:30688:-1 // ensembl // 11 // --- /// YKL215C // cdna:known chromosome:SGD1:XI:26828:30688:-1 gene:YKL215C // ensembl // 11 // --- --- No cerevisiae_gene 1.21905241023249 1.39118906141483 1.24018492733166 2.29778477668068 1.04329845323613 Max fold change below threshold 4 2.29778477668068 Max fold change at or above threshold -0.71880551569496 -0.0695106988660012 1.4352550447171 -0.646938830156135 322.347557067871 135.519668010468 0.420414751218151 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774334_at YOR167C.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps28Ap and has similarity to rat S28 ribosomal protein 2.29618047727584 1587.17254638672 3452.435546875 RPS28A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3637.88256835938 1590.02600097656 1584.31909179688 3266.98852539063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR167C /GEN=RPS28A /DB_XREF=GI:6324741 /SEG=NC_001147:-648804,649007 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps28Ap and has similarity to rat S28 ribosomal protein /NOTE=Rps28ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0005693 // RPS28A SGDID:S0005693, Chr XV from 649007-648804, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022576 // cdna:GeneFinder chromosome:SGD1:XV:648804:649007:-1 // ensembl // 11 // --- /// YOR167C // cdna:known chromosome:SGD1:XV:648804:649007:-1 gene:YOR167C // ensembl // 11 // --- --- No cerevisiae_gene -1.16280581682006 -2.28793904384272 -1.51722377817334 -2.29618047727584 -1.11352780705724 Max fold change below threshold 4 2.29618047727584 Max fold change at or above threshold 1.02811314013571 -0.854964126016004 -0.860211832865901 0.687062818746191 2519.80404663086 1087.50533193353 0.43158329449768 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773670_at YOR009W.S1 Cell wall mannoprotein of the Srp1p/Tip1p family of serine-alanine-rich proteins; expressed under anaerobic conditions and required for anaerobic growth; transcription is also induced by cold shock 2.29555997125813 151.409343719482 100.538703918457 TIR4 --- 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 90.5168533325195 99.2543411254883 203.564346313477 110.560554504395 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR009W /GEN=TIR4 /DB_XREF=GI:6324583 /SEG=NC_001147:+344334,345797 /DEF=Tir4p /NOTE=go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005535 // TIR4 SGDID:S0005535, Chr XV from 344334-345797, Verified ORF // sgd // 11 // --- /// GENSCAN00000017474 // cdna:Genscan chromosome:SGD1:XV:344334:345797:1 // ensembl // 11 // --- /// GENEFINDER00000022890 // cdna:GeneFinder chromosome:SGD1:XV:344334:345797:1 // ensembl // 11 // --- /// YOR009W // cdna:known chromosome:SGD1:XV:344334:345797:1 gene:YOR009W // ensembl // 11 // --- --- No cerevisiae_gene 2.29555997125813 1.09652885038846 -1.18257605312959 2.24891099081482 1.22143612414633 Max fold change below threshold 4 2.29555997125813 Max fold change at or above threshold -0.677004495792293 -0.510174530608505 1.48147741170799 -0.294298385307188 125.97402381897 52.373611559189 0.415749294747084 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-YER022w5_at AFFX-YER022w5 subunit of RNA polymerase II holoenzyme/mediator complex 2.29524207629371 12.3045568466187 19.630166053772 SRB4 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from direct assay 18.8723430633545 8.22237586975098 16.3867378234863 20.3879890441895 2.38933694163279E-6 0.0504636391997337 3.72613897070551E-7 2.07797668849707E-7 P M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /GEN=SRB4 /DB_XREF=gb:L12026.1 /DB_XREF=spd:YER022W /NOTE=SIF corresponding to nucleotides 329-620 of gb:L12026.1 /DEF=Saccharomyces cerevisiae supressor protein (SRB4) gene, complete cds. --- --- --- --- --- --- S0000824 // SRB4 SGDID:S0000824, Chr V from 198811-200874, Verified ORF // sgd // 51 // --- /// GENSCAN00000016824 // cdna:Genscan chromosome:SGD1:V:198811:200874:1 // ensembl // 51 // --- /// GENEFINDER00000019772 // cdna:GeneFinder chromosome:SGD1:V:198811:200874:1 // ensembl // 51 // --- /// YER022W // cdna:known chromosome:SGD1:V:198811:200874:1 gene:YER022W // ensembl // 51 // --- --- AFFX_control cerevisiae_gene 2.17118385356454 -2.29524207629371 1.83002994681007 -1.1516839572734 1.08031042969847 Max fold change below threshold 4 2.29524207629371 Max fold change at or above threshold 0.535936933053663 -1.42886405880351 0.0773702960041555 0.815556829745687 15.9673614501953 5.42037958945499 0.339466204630114 PPMPPP Called_P_>2EXP 1 0 PMPP 0 3 1 No No 2 < x = 3
1769349_s_at YOR072W-B.S1 Identified by expression profiling and mass spectrometry /// Identified by expression profiling and mass spectrometry /// Identified by SAGE 2.29518986962809 145.667659759521 191.09831237793 --- --- --- --- 183.484344482422 173.443954467773 117.89136505127 198.712280273438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR072W-B /GEN=GYP1 /DB_XREF=GI:33438883 /SEG=NC_001147:+464470,464631 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Yor072w-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028850 // YNL042W-B SGDID:S0028850, Chr XIV from 547112-547369, Uncharacterized ORF // sgd // 11 // --- /// S0028811 // YOL013W-B SGDID:S0028811, Chr XV from 301047-301238, Uncharacterized ORF // sgd // 11 // --- /// S0028516 // YOR072W-B SGDID:S0028516, Chr XV from 464470-464631, Uncharacterized ORF // sgd // 11 // --- /// YNL042W-B // cdna:known chromosome:SGD1:XIV:547112:547369:1 gene:YNL042W-B // ensembl // 11 // --- /// YOL013W-B // cdna:known chromosome:SGD1:XV:301047:301238:1 gene:YOL013W-B // ensembl // 11 // --- /// YOR072W-B // cdna:known chromosome:SGD1:XV:464470:464631:1 gene:YOR072W-B // ensembl // 11 // --- M26096 // gb // 4 // Cross Hyb Matching Probes No cerevisiae_gene 2.29518986962809 -1.05788838270817 -1.10505068141926 -1.55638493457622 1.08299310676326 Max fold change below threshold 4 2.29518986962809 Max fold change at or above threshold 0.42868072453349 0.143665194925594 -1.43330050765516 0.86095458819608 168.382986068726 35.2275191055774 0.209210680532766 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771095_at YLR071C.S1 Component of RNA polymerase II holoenzyme/mediator complex; affects chromatin structure and transcriptional regulation of diverse genes; required for glucose repression, HO repression, RME1 repression and sporulation 2.29466885578968 526.905303955078 1177.29663085938 RGR1 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from direct assay 1103.23474121094 480.781677246094 573.028930664063 1251.35852050781 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR071C /GEN=RGR1 /DB_XREF=GI:6323100 /SEG=NC_001144:-275379,278627 /DEF=affects chromatin structure, transcriptional regulation of diverse genes and sporulation, required for glucose repression, HO repression, RME1 repression and sporulation /NOTE=Rgr1p; go_component: mediator complex [goid GO:0000119] [evidence IDA] [pmid 9420330]; go_function: RNA polymerase II transcription mediator activity [goid GO:0016455] [evidence IDA] [pmid 9420330]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IDA] [pmid 9420330] --- --- --- --- --- --- S0004061 // RGR1 SGDID:S0004061, Chr XII from 278627-275379, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017872 // cdna:Genscan chromosome:SGD1:XII:275379:278627:-1 // ensembl // 11 // --- /// GENEFINDER00000024556 // cdna:GeneFinder chromosome:SGD1:XII:275379:278627:-1 // ensembl // 11 // --- /// YLR071C // cdna:known chromosome:SGD1:XII:275379:278627:-1 gene:YLR071C // ensembl // 11 // --- --- No cerevisiae_gene -1.76897542807773 -2.29466885578968 -1.11472572368929 -1.92526883404026 1.13426315702703 Max fold change below threshold 4 2.29466885578968 Max fold change at or above threshold 0.657071641950345 -0.971527532830819 -0.730169895621376 1.04462578650185 852.100967407227 382.201510109744 0.448540166868613 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771335_at SPAC1071.08.S1 --- 2.29439544633653 --- --- --- --- 8.927978515625 14.105694770813 8.8939094543457 6.25404644012451 0.0805663987994194 0.030273400247097 0.0461426004767418 0.0239257998764515 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1071.08 /GEN=rpp203 /DEF=60S acidic ribosomal protein (P2C subunit) --- --- --- --- --- --- AJ002734 // Schizosaccharomyces pombe cDNA for 60S acidic ribosomal protein rpa6. // gb // 11 // --- /// SPAC1071.08 // |rpp203|rpp2-3, rla6|60S acidic ribosomal protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.29439544633653 1.57994273240313 -1.10724872996544 -1.00383060581561 -1.4275523217009 Max fold change below threshold 4 2.29439544633653 Max fold change at or above threshold AAPPPP No 4 0 APPP 1 3 0 No No 2 < x = 3
1771656_at SPAC17H9.05.S1 --- 2.29400003004665 --- --- --- --- 0.773657262325287 1.32491040229797 1.77476978302002 0.797125458717346 0.94140625 0.953857004642487 0.943848013877869 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17H9.05 /GEN=ebp2 /DEF=P40-like --- --- --- --- --- --- SPAC17H9.05 // |ebp2||P40-like|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.99901292892079 1.71252887656719 -1.00296574552712 2.29400003004665 1.03033409952299 Max fold change below threshold 0 2.29400003004665 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773160_at YNL250W.S1 Subunit of MRX complex, with Mre11p and Xrs2p, involved in processing double-strand DNA breaks in vegetative cells, initiation of meiotic DSBs, telomere maintenance, and nonhomologous end joining 2.29387949845017 330.205307006836 229.482574462891 RAD50 706 // meiotic DNA double-strand break processing // traceable author statement /// 722 // telomerase-independent telomere maintenance // inferred from mutant phenotype /// 727 // double-strand break repair via break-induced replication // traceable author statement /// 6303 // double-strand break repair via nonhomologous end-joining // inferred from mutant phenotype /// 42138 // meiotic DNA double-strand break formation // traceable author statement 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 30870 // Mre11 complex // inferred from physical interaction 3690 // double-stranded DNA binding // inferred from direct assay /// 3690 // double-stranded DNA binding // inferred from physical interaction /// 5515 // protein binding // inferred from physical interaction /// 16887 // ATPase activity // inferred from sequence similarity /// 42162 // telomeric DNA binding // inferred from direct assay 198.474151611328 276.349090576172 384.0615234375 260.490997314453 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL250W /GEN=RAD50 /DB_XREF=GI:6324079 /SEG=NC_001146:+175409,179347 /DEF=Subunit of MRX complex, with Mre11p and Xrs2p, involved in processing double-strand DNA breaks in vegetative cells, initiation of meiotic DSBs, telomere maintenance, and nonhomologous end joining /NOTE=Rad50p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9845372]; go_function: ATPase activity [goid GO:0016887] [evidence ISS] [pmid 2162963]; go_function: double-stranded DNA binding [goid GO:0003690] [evidence IDA,IPI] [pmid 8367302]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 9845372]; go_process: double-strand break repair via break-induced replication [goid GO:0000727] [evidence TAS] [pmid 11459961]; go_process: double-strand break repair via nonhomologous end-joining [goid GO:0006303] [evidence IMP] [pmid 12399380]; go_process: meiotic DNA double-strand break formation [goid GO:0042138] [evidence TAS] [pmid 9334324]; go_process: meiotic DNA double-strand break processing [goid GO:0000706] [evidence TAS] [pmid 9334324]; go_process: telomerase-independent telomere maintenance [goid GO:0000722] [evidence IMP] [pmid 11238918] --- --- --- --- scop // a.2.5.Prefoldin // All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin // 0.00100000004749745 --- S0005194 // RAD50 SGDID:S0005194, Chr XIV from 175409-179347, Verified ORF // sgd // 11 // --- /// GENSCAN00000019840 // cdna:Genscan chromosome:SGD1:XIV:175409:179347:1 // ensembl // 11 // --- /// GENEFINDER00000020618 // cdna:GeneFinder chromosome:SGD1:XIV:175511:179347:1 // ensembl // 11 // --- /// YNL250W // cdna:known chromosome:SGD1:XIV:175409:179347:1 gene:YNL250W // ensembl // 11 // --- --- No cerevisiae_gene 1.0673455367265 1.3923681664973 2.29387949845017 1.93507074004079 1.31246812342885 Max fold change below threshold 4 2.29387949845017 Max fold change at or above threshold -1.05432015376753 -0.0452832801509651 1.35036232739287 -0.250758893474377 279.843940734863 77.1774956902481 0.275787624658165 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-BioDn-5_at AFFX-BioDn-5 --- 2.29375916366495 --- --- --- --- 747.3671875 907.802185058594 325.826354980469 411.903778076172 4.42872878920753E-5 4.42872878920753E-5 4.42872878920753E-5 4.42872878920753E-5 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --- --- --- --- --- --- J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// AFFX-BioDn-5 // E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioD gene dethiobiotin synthetase /LEN=676 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// AFFX-BioDn-5 // --- // unknown // --- // --- /// AFFX-BioDn-5 // --- // unknown // --- // --- /// AFFX-BioDn-5 // --- // unknown // --- // --- /// AFFX-BioDn-5 // --- // unknown // --- // --- /// AFFX-BioDn-5 // --- // gb // --- // --- /// AFFX-BioDn-5 // E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-BioDn-5 // --- // unknown // --- // --- /// AFFX-BioDn-5 // --- // affx // --- // --- /// AFFX-BioDn-5 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-BioDn-5 // --- // affx // --- // --- /// AFFX-BioDn-5 // --- // affx // --- // --- /// AFFX-BioDn-5 // --- // affx // --- // --- /// AFFX-BioDn-5 // --- // affx // --- // --- /// AFFX-BioDn-5 // --- // affx // --- // --- /// AFFX-BioDn-5 // --- // affx // --- // --- /// AFFX-BioDn-5 // --- // affx // --- // --- /// AFFX-BioDn-5 // --- // affx // --- // --- /// AFFX-BioDn-5 // --- // affx // --- // --- /// AFFX-BioDn-5 // --- // affx // --- // --- /// AFFX-BioDn-5 // --- // affx // --- // --- 1036660 // gb // 4 // Cross Hyb Matching Probes /// 26245917 // gb // 4 // Cross Hyb Matching Probes AFFX_control No -1.66428345515335 1.21466690034287 -1.86028306241695 -2.29375916366495 -1.81442178314226 Max fold change below threshold 4 2.29375916366495 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772174_at YKL082C.S1 Essential protein, constituent of 66S pre-ribosomal particles; interacts with proteins involved in ribosomal biogenesis and cell polarity; member of the SURF-6 family 2.29318934332113 379.597640991211 449.060684204102 RRP14 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction /// 42273 // ribosomal large subunit biogenesis // inferred from physical interaction 5730 // nucleolus // inferred from direct assay --- 425.274993896484 391.746459960938 367.448822021484 472.846374511719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL082C /GEN=MDH1 /DB_XREF=GI:6322768 /SEG=NC_001143:-280670,281974 /DEF=Required for normal pre-rRNA Processing /NOTE=Ykl082cp --- --- --- --- --- --- S0001565 // RRP14 SGDID:S0001565, Chr XI from 281974-280670, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENEFINDER00000023029 // cdna:GeneFinder chromosome:SGD1:XI:280406:281974:-1 // ensembl // 10 // --- /// YKL082C // cdna:known chromosome:SGD1:XI:280670:281974:-1 gene:YKL082C // ensembl // 10 // --- YKL083W // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene 2.29318934332113 -1.08558733099692 1.07969675239575 -1.15737204315114 1.11186028169532 Max fold change below threshold 4 2.29318934332113 Max fold change at or above threshold 0.239776237648167 -0.494690199979554 -1.02694728030594 1.28186124263733 414.329162597656 45.6501920548499 0.110178563750241 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775133_at YJL036W.S1 Sorting nexin, involved in the retrieval of late-Golgi SNAREs from the post-Golgi endosome to the trans-Golgi network and in cytoplasm to vacuole transport; contains a PX domain; forms complex with Snx41p and Atg20p 2.2926929911497 316.667587280273 462.941070556641 SNX4 6810 // transport // inferred from direct assay /// 6914 // autophagy // inferred from direct assay 16020 // membrane // inferred from physical interaction 8289 // lipid binding // inferred from direct assay 446.286285400391 256.821929931641 376.513244628906 479.595855712891 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL036W /GEN=SNX4 /DB_XREF=GI:6322424 /SEG=NC_001142:+378741,380012 /DEF=Sorting NeXin /NOTE=Snx4p; go_component: membrane [goid GO:0016020] [evidence IPI] [pmid 12048214]; go_function: lipid binding [goid GO:0008289] [evidence IDA] [pmid 12048214]; go_process: autophagy [goid GO:0006914] [evidence IDA] [pmid 12048214]; go_process: transport [goid GO:0006810] [evidence IDA] [pmid 12048214] --- --- --- --- --- --- S0003573 // SNX4 SGDID:S0003573, Chr X from 378741-380012, Verified ORF // sgd // 11 // --- /// GENSCAN00000024111 // cdna:Genscan chromosome:SGD1:X:378741:380012:1 // ensembl // 11 // --- /// GENEFINDER00000024328 // cdna:GeneFinder chromosome:SGD1:X:378741:380012:1 // ensembl // 11 // --- /// YJL036W // cdna:known chromosome:SGD1:X:378741:380012:1 gene:YJL036W // ensembl // 11 // --- --- No cerevisiae_gene -2.2926929911497 -1.73772654663556 1.23664431992841 -1.18531364239325 1.07463722592913 Max fold change below threshold 4 2.2926929911497 Max fold change at or above threshold 0.573352420230889 -1.34991393811914 -0.13491875670674 0.911480274594992 389.804328918457 98.511760810547 0.252721053878175 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769525_at YEL003W.S1 Subunit of the heterohexameric cochaperone prefoldin complex which binds specifically to cytosolic chaperonin and transfers target proteins to it 2.29180716718214 305.572280883789 489.374557495117 GIM4 7021 // tubulin folding // inferred from mutant phenotype /// 7021 // tubulin folding // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay /// 16272 // prefoldin complex // inferred from sequence similarity /// 16272 // prefoldin complex // inferred from physical interaction 15631 // tubulin binding // inferred from direct assay 472.013031005859 405.187866210938 205.956695556641 506.736083984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL003W /GEN=GIM4 /DB_XREF=GI:6320834 /SEG=NC_001137:+148227,148598 /DEF=Prefoldin subunit 2; putative homolog of subunit 2 of bovine prefoldin, a chaperone comprised of six subunits /NOTE=Gim4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9463374]; go_component: prefoldin complex [goid GO:0016272] [evidence IPI] [pmid 9463374]; go_component: prefoldin complex [goid GO:0016272] [evidence ISS] [pmid 9630229]; go_function: tubulin binding [goid GO:0015631] [evidence IDA] [pmid 9463374]; go_process: tubulin folding [goid GO:0007021] [evidence IMP,ISS] [pmid 9463374] --- --- --- --- --- S0000729 // span:5-22 // numtm:1 S0000729 // GIM4 SGDID:S0000729, Chr V from 148227-148598, Verified ORF // sgd // 11 // --- /// YEL003W // cdna:known chromosome:SGD1:V:148227:148598:1 gene:YEL003W // ensembl // 11 // --- --- No cerevisiae_gene 1.26325927917272 -1.16492390411349 -1.24118652469333 -2.29180716718214 1.0735637592558 Max fold change below threshold 4 2.29180716718214 Max fold change at or above threshold 0.554392484122418 0.0573766262481417 -1.42441622083162 0.812647110461063 397.473419189453 134.452782011285 0.338268612491038 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778088_at YLR046C.S1 Putative membrane protein, transcription is activated by paralogous transcription factors Yrm1p and Yrr1p along with genes involved in multidrug resistance 2.29147474302984 473.272567749023 1028.21936035156 --- --- 16021 // integral to membrane // inferred from sequence similarity --- 962.394287109375 419.989044189453 526.556091308594 1094.04443359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR046C /GEN=STU2 /DB_XREF=GI:6323075 /SEG=NC_001144:-238002,238814 /DEF=Putative membrane protein, transcription is activated by paralogous transcription factors Yrm1p and Yrr1p along with genes involved in multidrug resistance /NOTE=Ylr046cp; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 12524434]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004036 // span:34-56,66-88,100-122,142-164,185-207,222-241 // numtm:6 S0004036 // YLR046C SGDID:S0004036, Chr XII from 238814-238002, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YLR046C // cdna:known chromosome:SGD1:XII:238002:238814:-1 gene:YLR046C // ensembl // 11 // --- --- No cerevisiae_gene -1.37216215771695 -2.29147474302984 1.22296609788971 -1.82771465945373 1.13679439731484 Max fold change below threshold 4 2.29147474302984 Max fold change at or above threshold 0.645711480155507 -1.00909630281077 -0.683974115511923 1.04735893816719 750.745964050293 327.775375788751 0.436599584259361 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773058_at YKR027W.S1 The authentic, non-tagged protein was localized to the mitochondria 2.29089167350755 185.075134277344 415.746719360352 --- --- 5739 // mitochondrion // inferred from direct assay /// 30136 // clathrin-coated vesicle // inferred from direct assay --- 374.683380126953 163.553512573242 206.596755981445 456.81005859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR027W /GEN=GCN3 /DB_XREF=GI:6322879 /SEG=NC_001143:+491007,493304 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ykr027wp --- --- --- --- --- --- S0001735 // FMP50 SGDID:S0001735, Chr XI from 491007-493304, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018441 // cdna:Genscan chromosome:SGD1:XI:491007:493304:1 // ensembl // 11 // --- /// YKR027W // cdna:known chromosome:SGD1:XI:491007:493304:1 gene:YKR027W // ensembl // 11 // --- --- No cerevisiae_gene -1.49724513967347 -2.29089167350755 1.18198592968917 -1.81359759666606 1.21918954195131 Max fold change below threshold 4 2.29089167350755 Max fold change at or above threshold 0.536443207241853 -0.988471862214997 -0.677586001905487 1.12961465687863 300.410926818848 138.45352556514 0.460880458082104 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774243_at YIR025W.S1 Subunit of the anaphase-promoting complex (APC); needed for meiotic nuclear division 2.29078527489558 301.447593688965 163.923034667969 MND2 70 // mitotic sister chromatid segregation // inferred from mutant phenotype /// 7131 // meiotic recombination // inferred from mutant phenotype /// 16567 // protein ubiquitination // inferred from physical interaction /// 30071 // regulation of mitotic metaphase/anaphase transition // inferred from mutant phenotype /// 31145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from physical interaction 5680 // anaphase-promoting complex // inferred from direct assay /// 5680 // anaphase-promoting complex // inferred from physical interaction --- 167.670364379883 218.798385620117 384.096801757813 160.175704956055 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR025W /GEN=MND2 /DB_XREF=GI:6322216 /SEG=NC_001141:+403656,404762 /DEF=needed for Meiotic Nuclear Division /NOTE=Mnd2p; go_component: anaphase-promoting complex [goid GO:0005680] [evidence IDA] [pmid 12574115]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiotic recombination [goid GO:0007131] [evidence IMP] [pmid 11470404]; go_process: regulation of mitotic metaphase/anaphase transition [goid GO:0030071] [evidence IMP] [pmid 12609981] --- --- --- --- --- --- S0001464 // MND2 SGDID:S0001464, Chr IX from 403656-404762, Verified ORF // sgd // 11 // --- /// GENSCAN00000016494 // cdna:Genscan chromosome:SGD1:IX:403656:404762:1 // ensembl // 11 // --- /// GENEFINDER00000019127 // cdna:GeneFinder chromosome:SGD1:IX:403656:404762:1 // ensembl // 11 // --- /// YIR025W // cdna:known chromosome:SGD1:IX:403656:404762:1 gene:YIR025W // ensembl // 11 // --- --- No cerevisiae_gene -1.72339419940109 1.30493177151089 2.13929450436345 2.29078527489558 -1.04679023841902 Max fold change below threshold 4 2.29078527489558 Max fold change at or above threshold -0.62365717942335 -0.133210634206204 1.45241766037763 -0.695549846748074 232.685314178467 104.247897632957 0.448020959126797 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779785_at SPAC3C7.11c.S1 --- 2.28965186245439 --- --- --- --- 5.27305507659912 2.30299425125122 6.56625175476074 3.63476967811584 0.274170011281967 0.5 0.219482004642487 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3C7.11c /GEN=cnx1 /DEF=calnexin (PMID 7876257) --- --- --- --- --- --- SPAC3C7.11c // |cnx1|cal1|calnexin |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.73374805283731 -2.28965186245439 -2.22030994475526 1.24524619207954 -1.45072605517401 Max fold change below threshold 3 2.28965186245439 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779230_at SPAC1851.02.S1 --- 2.28964089381064 --- --- --- --- 4.83608913421631 9.29000949859619 2.96449875831604 4.50724077224731 0.219482004642487 0.334473013877869 0.466064006090164 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1851.02 /DEF=fatty acyltransferase --- --- --- --- --- --- SPAC1851.02 // |||fatty acyltransferase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.07545730068998 1.92097565631442 2.28964089381064 -1.63133451166072 -1.07296001669 Max fold change below threshold 4 2.28964089381064 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1779106_at YNL272C.S1 Guanyl-nucleotide exchange factor for the small G-protein Sec4p, located on cytoplasmic vesicles; essential for post-Golgi vesicle transport 2.2891850471476 81.8769798278809 169.415016174316 SEC2 6887 // exocytosis // inferred from mutant phenotype 5829 // cytosol // inferred from direct assay /// 16023 // cytoplasmic membrane-bound vesicle // inferred from direct assay 5085 // guanyl-nucleotide exchange factor activity // inferred from direct assay 153.778457641602 78.653434753418 85.1005249023438 185.051574707031 0.00415039015933871 0.00585938012227416 0.00585938012227416 0.00585938012227416 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL272C /GEN=SEC2 /DB_XREF=GI:6324057 /SEG=NC_001146:-126803,129082 /DEF=SEC2 encodes a guanyl-nucleotide exchange factor for Sec4p and is essential for vesicle transport /NOTE=Sec2p; go_component: cytoplasmic vesicle [goid GO:0016023] [evidence IDA] [pmid 12045183]; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 12045183]; go_function: guanyl-nucleotide exchange factor activity [goid GO:0005085] [evidence IDA] [pmid 9199166]; go_process: exocytosis [goid GO:0006887] [evidence IMP] [pmid 12045183] --- --- --- --- --- --- S0005216 // SEC2 SGDID:S0005216, Chr XIV from 129082-126803, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019824 // cdna:Genscan chromosome:SGD1:XIV:126803:129082:-1 // ensembl // 11 // --- /// GENEFINDER00000020638 // cdna:GeneFinder chromosome:SGD1:XIV:126803:129082:-1 // ensembl // 11 // --- /// YNL272C // cdna:known chromosome:SGD1:XIV:126803:129082:-1 gene:YNL272C // ensembl // 11 // --- --- No cerevisiae_gene -2.2891850471476 -1.9551397612031 1.29899459467505 -1.80702125889433 1.20336474656493 Max fold change below threshold 4 2.2891850471476 Max fold change at or above threshold 0.538996204279705 -0.900341226595323 -0.776819957451935 1.13816497976755 125.645998001099 52.194170231863 0.415406547460482 PPPPPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1771710_at YDR083W.S1 Protein involved in rRNA processing; involved in pre-rRNA cleavage at site A2; mutation is synthetically lethal with a gar1 mutation 2.28870672603145 169.154968261719 402.341400146484 RRP8 6364 // rRNA processing // inferred from genetic interaction /// 6364 // rRNA processing // inferred from mutant phenotype 5730 // nucleolus // inferred from direct assay 8168 // methyltransferase activity // inferred from sequence similarity /// 8168 // methyltransferase activity // inferred from mutant phenotype 362.958587646484 158.586761474609 179.723175048828 441.724212646484 0.000244141003349796 0.00415039015933871 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR083W /GEN=RRP8 /DB_XREF=GI:37362631 /SEG=NC_001136:+612068,613219 /DEF=Rrp8p /NOTE=go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 10864042]; go_function: methyltransferase activity [goid GO:0008168] [evidence IMP,ISS] [pmid 10864042]; go_process: rRNA processing [goid GO:0006364] [evidence IGI,IMP] [pmid 10864042] --- --- --- --- --- --- S0002490 // RRP8 SGDID:S0002490, Chr IV from 612069-613220, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023556 // cdna:GeneFinder chromosome:SGD1:IV:612069:613220:1 // ensembl // 10 // --- /// GENSCAN00000025158 // cdna:Genscan chromosome:SGD1:IV:612354:613220:1 // ensembl // 10 // --- /// YDR083W // cdna:known chromosome:SGD1:IV:612069:613220:1 gene:YDR083W // ensembl // 10 // --- --- No cerevisiae_gene 1.37126969375606 -2.28870672603145 -1.04211535249888 -2.01954248553574 1.21700995011783 Max fold change below threshold 4 2.28870672603145 Max fold change at or above threshold 0.556728761579232 -0.916902622451296 -0.764497650727732 1.1246715115998 285.748184204102 138.68585345468 0.485342903721204 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771278_at YOR171C.S1 Sphingoid long-chain base kinase, responsible for synthesis of long-chain base phosphates, which function as signaling molecules, regulates synthesis of ceramide from exogenous long-chain bases, localizes to the Golgi and late endosomes 2.28829128762095 934.039855957031 1216.31176757813 LCB4 6665 // sphingolipid metabolism // inferred from direct assay /// 19722 // calcium-mediated signaling // inferred from mutant phenotype 5624 // membrane fraction // inferred from direct assay /// 5625 // soluble fraction // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 5794 // Golgi apparatus // inferred from direct assay 17050 // D-erythro-sphingosine kinase activity // inferred from direct assay 1213.22692871094 1028.74060058594 839.339111328125 1219.39660644531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR171C /GEN=LCB4 /DB_XREF=GI:6324745 /SEG=NC_001147:-652010,653884 /DEF=involved in sphingolipid biosynthesis /NOTE=Lcb4p; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 12459470]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 12493772]; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 9677363]; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 9677363]; go_function: D-erythro-sphingosine kinase activity [goid GO:0017050] [evidence IDA] [pmid 9677363]; go_process: calcium-mediated signaling [goid GO:0019722] [evidence IMP] [pmid 11278643]; go_process: sphingolipid metabolism [goid GO:0006665] [evidence IDA] [pmid 9677363] --- --- --- --- --- --- S0005697 // LCB4 SGDID:S0005697, Chr XV from 653884-652010, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017591 // cdna:Genscan chromosome:SGD1:XV:652010:653884:-1 // ensembl // 11 // --- /// YOR171C // cdna:known chromosome:SGD1:XV:652010:653884:-1 gene:YOR171C // ensembl // 11 // --- YOR170W // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene -2.28829128762095 -1.17933221262962 1.52492067668435 -1.44545501613906 1.00508534519666 Max fold change below threshold 4 2.28829128762095 Max fold change at or above threshold 0.765248343614046 -0.257400803621881 -1.3072957928239 0.799448252831731 1075.17581176758 180.400412618189 0.167786896471947 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772513_at SPAC19G12.10c.S1 --- 2.28825603710929 --- --- --- --- 14.9903688430786 20.410774230957 17.6718673706055 14.1923084259033 0.0461426004767418 0.0375977009534836 0.00585938012227416 0.030273400247097 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19G12.10c /GEN=cpy1 /DEF=serine carboxypeptidase (IDA) (PMID 9209031) --- --- --- --- --- --- SPAC19G12.10c // |cpy1|pcy1|serine carboxypeptidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.28825603710929 1.36159252948477 1.11021181927763 1.17888142417289 -1.05623189640656 Max fold change below threshold 4 2.28825603710929 Max fold change at or above threshold PAPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1770679_at SPCC794.06.S1 --- 2.28804495461092 --- --- --- --- 8.43626403808594 4.94473171234131 5.89257478713989 5.26810026168823 0.149657994508743 0.303710997104645 0.129638999700546 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC794.06 /DEF=TDT malic acid transporter --- --- --- --- --- --- SPCC794.06 // |||TDT malic acid transporter|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -2.28804495461092 -1.70611158074164 -1.16304188340425 -1.43167704150272 -1.60138638579791 Max fold change below threshold 4 2.28804495461092 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779773_at YLR003C.S1 Hypothetical protein 2.28798194982888 409.877090454102 452.380249023438 --- 6275 // regulation of DNA replication // inferred from genetic interaction 5634 // nucleus // inferred from direct assay --- 408.691589355469 429.350738525391 390.403442382813 496.068908691406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR003C /GEN=NOC3 /DB_XREF=GI:6323031 /SEG=NC_001144:-156854,157729 /DEF=Hypothetical ORF /NOTE=Ylr003cp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: regulation of DNA replication [goid GO:0006275] [evidence IGI] [pmid 11787774] --- --- --- --- --- --- S0003993 // YLR003C SGDID:S0003993, Chr XII from 157729-156854, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000017746 // cdna:Genscan chromosome:SGD1:XII:156854:157729:-1 // ensembl // 10 // --- /// GENEFINDER00000024668 // cdna:GeneFinder chromosome:SGD1:XII:156854:157729:-1 // ensembl // 10 // --- /// YLR003C // cdna:known chromosome:SGD1:XII:156854:157729:-1 gene:YLR003C // ensembl // 10 // --- --- No cerevisiae_gene 2.28798194982888 1.05054948452084 -1.2038673682511 -1.04684422570927 1.21379769393771 Max fold change below threshold 4 2.28798194982888 Max fold change at or above threshold -0.486447797308912 -0.0385464912430686 -0.882944518795521 1.4079388073475 431.12866973877 46.1243333969759 0.106985075766183 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-18srRnaa_at AFFX-18srRnaa --- 2.28697032465201 233.975776672363 206.24178314209 --- --- --- --- 250.466766357422 358.432525634766 109.519027709961 162.016799926758 3.44937543559354E-5 2.97848891932517E-5 4.61030649603345E-5 3.44937543559354E-5 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /GEN=18S rRNA /DB_XREF=gb:Z75578.1 /NOTE=SIF corresponding to nucleotides 19-351 of gb:Z75578.1 /DEF=S.cerevisiae 18S rRNA gene. --- --- --- --- --- --- D83552 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:465250-465418(-) /// L10741 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 18S ribosomal RNA, partial. // gb // 0 // chr12:465251-465539(-) /// D23705 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:465250-465418(-) /// L22158 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA (18S rRNA) fragment. // gb // 0 // chr12:465277-465545(-) /// L19742 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA fragment. // gb // 0 // chr12:465277-465547(-) /// D83552 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:456113-456281(-) /// L10741 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 18S ribosomal RNA, partial. // gb // 0 // chr12:456114-456402(-) /// D23705 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:456113-456281(-) /// L22158 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA (18S rRNA) fragment. // gb // 0 // chr12:456140-456408(-) /// L19742 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA fragment. // gb // 0 // chr12:456140-456410(-) --- AFFX_control cerevisiae_gene 1.01413163533174 1.43105822320265 1.40388776082741 -2.28697032465201 -1.54593083230041 Max fold change below threshold 4 2.28697032465201 Max fold change at or above threshold 0.278447876904253 1.26872555880692 -1.01434532745494 -0.532828108256231 220.108779907227 109.025742224044 0.495326639264444 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 No No 3 < x
1769781_at YDR393W.S1 Mitochondrial inner membrane protein required for normal mitochondrial morphology, may be involved in fission of the inner membrane; forms a homo-oligomeric complex 2.2864188388849 260.219940185547 403.158569335938 SHE9 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype /// 7007 // inner mitochondrial membrane organization and biogenesis // inferred from genetic interaction /// 7007 // inner mitochondrial membrane organization and biogenesis // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay --- 384.425018310547 264.406188964844 256.03369140625 421.892120361328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR393W /GEN=SHE9 /DB_XREF=GI:6320601 /SEG=NC_001136:+1259889,1261259 /DEF=Mitochondrial inner membrane protein required for normal mitochondrial morphology, may be involved in fission of the inner membrane; forms a homo-oligomeric complex /NOTE=She9p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 12591915]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: inner mitochondrial membrane organization and biogenesis [goid GO:0007007] [evidence IGI,IMP] [pmid 12591915]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence IMP] [pmid 11907266] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 2.79999995231628 S0002801 // span:295-317 // numtm:1 S0002801 // SHE9 SGDID:S0002801, Chr IV from 1259891-1261261, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023913 // cdna:GeneFinder chromosome:SGD1:IV:1259891:1261261:1 // ensembl // 11 // --- /// GENSCAN00000025412 // cdna:Genscan chromosome:SGD1:IV:1259891:1261261:1 // ensembl // 11 // --- /// YDR393W // cdna:known chromosome:SGD1:IV:1259891:1261261:1 gene:YDR393W // ensembl // 11 // --- --- No cerevisiae_gene 2.2864188388849 -1.45391838147049 -1.05015927244049 -1.50146262470035 1.09746270473092 Max fold change below threshold 4 2.2864188388849 Max fold change at or above threshold 0.62780088220424 -0.800981444483654 -0.900653109397994 1.07383367167741 331.689254760742 84.0007796176501 0.253251434624382 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773057_at YLR383W.S1 Protein involved in structural maintenance of chromosomes; required for interchromosomal and sister chromatid recombination; homologous to S. pombe rad18 2.28484427983325 189.551719665527 407.396224975586 SMC6 6281 // DNA repair // inferred from direct assay /// 8283 // cell proliferation // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 30915 // Smc5-Smc6 complex // inferred from physical interaction --- 400.331695556641 203.891632080078 175.211807250977 414.460754394531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR383W /GEN=RHC18 /DB_XREF=GI:6323415 /SEG=NC_001144:+885288,888632 /DEF=Protein involved in recombination repair, homologous to S. pombe rad18. Structural maintenance of chromosomes (SMC) protein. /NOTE=Rhc18p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11927594]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA repair [goid GO:0006281] [evidence IDA] [pmid 11927594]; go_process: cell proliferation [goid GO:0008283] [evidence IDA] [pmid 11927594] --- --- --- --- --- --- S0004375 // RHC18 SGDID:S0004375, Chr XII from 885288-888632, Verified ORF // sgd // 11 // --- /// GENSCAN00000018108 // cdna:Genscan chromosome:SGD1:XII:885288:888632:1 // ensembl // 11 // --- /// GENEFINDER00000024642 // cdna:GeneFinder chromosome:SGD1:XII:885420:888632:1 // ensembl // 11 // --- /// YLR383W // cdna:known chromosome:SGD1:XII:885288:888632:1 gene:YLR383W // ensembl // 11 // --- --- No cerevisiae_gene -1.47832814790506 -1.96345328875199 1.0857453181562 -2.28484427983325 1.03529338045104 Max fold change below threshold 4 2.28484427983325 Max fold change at or above threshold 0.805530354845175 -0.747993806217427 -0.974804977108585 0.917268428480837 298.473972320557 126.448025978687 0.423648417299463 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770658_at SPBC3D6.10.S1 --- 2.28358092047201 --- --- --- --- 1.37800431251526 1.27035582065582 1.10842764377594 0.797572612762451 0.696289002895355 0.870360970497131 0.780517995357513 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3D6.10 /GEN=apn2 /DEF=DNA-(apurinic or apyrimidinic site) lyase activity (predicted) --- --- --- --- --- --- AY483158 // Schizosaccharomyces pombe AP-endonuclease-like protein (apn2) mRNA, complete cds. // gb // 11 // --- /// SPBC3D6.10 // |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.99547823132798 -1.08473885041426 -2.28358092047201 -1.24320637459112 -1.72774778178809 Max fold change below threshold 0 2.28358092047201 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773619_at YGR082W.S1 Translocase of Outer Mitochondrial membrane; 20 kDa mitochondrial outer membrane protein import receptor 2.2830775025897 490.999908447266 919.974243164063 TOM20 30150 // mitochondrial matrix protein import // inferred from mutant phenotype /// 30150 // mitochondrial matrix protein import // inferred from physical interaction 5742 // mitochondrial outer membrane translocase complex // traceable author statement 8565 // protein transporter activity // traceable author statement /// 8565 // protein transporter activity // inferred from physical interaction 895.240478515625 392.120056152344 589.879760742188 944.7080078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR082W /GEN=TOM20 /DB_XREF=GI:6321519 /SEG=NC_001139:+644046,644597 /DEF=Translocase of Outer Mitochondrial membrane /NOTE=Tom20p; go_component: mitochondrial outer membrane translocase complex [goid GO:0005742] [evidence TAS] [pmid 9774667]; go_function: protein transporter activity [goid GO:0008565] [evidence IPI] [pmid 9252394]; go_function: protein transporter activity [goid GO:0008565] [evidence TAS] [pmid 9774667]; go_process: mitochondrial matrix protein import [goid GO:0030150] [evidence IMP,IPI] [pmid 9774667] --- --- --- --- --- CAA53068.1 // span:7-29 // numtm:1 /// S0003314 // span:7-29 // numtm:1 S0003314 // TOM20 SGDID:S0003314, Chr VII from 644048-644599, Verified ORF // sgd // 11 // --- /// X75319 // S.cerevisiae tom20 mRNA for 2OkDa outer membrane protein. // gb // 11 // --- /// GENSCAN00000019401 // cdna:Genscan chromosome:SGD1:VII:644048:644599:1 // ensembl // 11 // --- /// GENEFINDER00000021695 // cdna:GeneFinder chromosome:SGD1:VII:644048:644599:1 // ensembl // 11 // --- /// YGR082W // cdna:known chromosome:SGD1:VII:644048:644599:1 gene:YGR082W // ensembl // 11 // --- --- No cerevisiae_gene 1.51375560588562 -2.2830775025897 -1.01355502579249 -1.5176660365313 1.05525613562391 Max fold change below threshold 4 2.2830775025897 Max fold change at or above threshold 0.726253869403826 -1.19936721722262 -0.442470378381413 0.915583726200205 705.487075805664 261.276959344433 0.370349746019168 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777249_at SPCC1682.16.S1 --- 2.28245865479972 --- --- --- --- 6.02448844909668 6.75470590591431 5.14671277999878 5.70058822631836 0.149657994508743 0.398925989866257 0.219482004642487 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1682.16 /GEN=rpt4 /DEF=19S proteasome regulatory subunit --- --- --- --- --- --- SPCC1682.16 // |rpt4||19S proteasome regulatory subunit|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.28245865479972 1.12120820929238 -1.16989411636486 -1.1705507392037 -1.05681873693015 Max fold change below threshold 4 2.28245865479972 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1772787_at SPCC188.08c.S1 --- 2.28164906171913 --- --- --- --- 13.639331817627 17.1522197723389 7.88724660873413 6.45755958557129 0.0375977009534836 0.0952147990465164 0.171387001872063 0.111571997404099 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC188.08c /GEN=ubp22 /DEF=ubiquitin C-terminal hydrolase activity --- --- --- --- --- --- SPCC188.08c // |ubp22|ubp5|ubiquitin C-terminal hydrolase activity|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.72246046131918 1.25755572206052 -2.28164906171913 -1.72928938249796 -2.11214958791903 Max fold change below threshold 4 2.28164906171913 Max fold change at or above threshold PPAAAA No 4 0 PAAA 3 1 0 No No x = 1
1770362_s_at YHR043C.S1 2-deoxyglucose-6-phosphate phosphatase, member of a family of low molecular weight phosphatases, similar to Dog1p, induced by oxidative and osmotic stress, confers 2-deoxyglucose resistance when overexpressed /// 2-deoxyglucose-6-phosphate phosphatase, similar to Dog2p, member of a family of low molecular weight phosphatases; confers 2-deoxyglucose resistance when overexpressed, in vivo substrate has not yet been identified 2.28107880205821 348.764549255371 235.910484313965 DOG2 /// DOG1 6006 // glucose metabolism // inferred from sequence similarity /// 6950 // response to stress // inferred from expression pattern 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3850 // 2-deoxyglucose-6-phosphatase activity // inferred from direct assay 207.880661010742 223.336929321289 474.192169189453 263.940307617188 0.00415039015933871 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR043C /GEN=DOG2 /DB_XREF=GI:6321833 /SEG=NC_001140:-192797,193537 /DEF=2-deoxyglucose-6-phosphate phosphatase, member of a family of low molecular weight phosphatases, similar to Dog1p, induced by oxidative and osmotic stress, confers 2-deoxyglucose resistance when overexpressed /NOTE=Dog2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: 2-deoxyglucose-6-phosphatase activity [goid GO:0003850] [evidence IDA] [pmid 8553694]; go_process: glucose metabolism [goid GO:0006006] [evidence ISS] [pmid 8553694]; go_process: response to stress [goid GO:0006950] [evidence IEP] [pmid 10960096] --- --- --- --- --- --- S0001085 // DOG2 SGDID:S0001085, Chr VIII from 193537-192797, reverse complement, Verified ORF // sgd // 11 // --- /// S0001086 // DOG1 SGDID:S0001086, Chr VIII from 194800-194060, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016590 // cdna:Genscan chromosome:SGD1:VIII:192797:193375:-1 // ensembl // 11 // --- /// GENSCAN00000016591 // cdna:Genscan chromosome:SGD1:VIII:194060:194800:-1 // ensembl // 11 // --- /// YHR043C // cdna:known chromosome:SGD1:VIII:192797:193537:-1 gene:YHR043C // ensembl // 11 // --- /// YHR044C // cdna:known chromosome:SGD1:VIII:194060:194800:-1 gene:YHR044C // ensembl // 11 // --- --- No cerevisiae_gene 1.34269972981577 1.07435164115506 1.29440803272717 2.28107880205821 1.26967225490758 Max fold change below threshold 4 2.28107880205821 Max fold change at or above threshold -0.683750552765109 -0.558618828357664 1.47226910077639 -0.229899719653613 292.337516784668 123.519981713184 0.422525247774364 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775478_at YNR071C.S1 Hypothetical protein 2.28040783161746 310.562103271484 444.102478027344 --- --- --- --- 408.071746826172 267.488830566406 353.635375976563 480.133209228516 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR071C /GEN=BSC5 /DB_XREF=GI:6324399 /SEG=NC_001146:-770437,771465 /DEF=Hypothetical ORF /NOTE=Ynr071cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005354 // YNR071C SGDID:S0005354, Chr XIV from 771466-770438, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020097 // cdna:Genscan chromosome:SGD1:XIV:770438:771466:-1 // ensembl // 11 // --- /// GENEFINDER00000020470 // cdna:GeneFinder chromosome:SGD1:XIV:770438:771466:-1 // ensembl // 11 // --- /// YNR071C // cdna:known chromosome:SGD1:XIV:770438:771466:-1 gene:YNR071C // ensembl // 11 // --- --- No cerevisiae_gene -2.12028163348181 -1.52556555711908 2.28040783161746 -1.15393361226739 1.17659017798417 Max fold change below threshold 4 2.28040783161746 Max fold change at or above threshold 0.342679024674484 -1.22451905302659 -0.264169787558803 1.14600981591091 377.332290649414 89.7033490916395 0.237730380660648 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773962_at YCR066W.S1 Protein involved in postreplication repair; binds single-stranded DNA and has single-stranded DNA dependent ATPase activity; forms heterodimer with Rad6p; contains RING-finger motif 2.27989150422273 123.830394744873 260.377960205078 RAD18 6281 // DNA repair // inferred from mutant phenotype 790 // nuclear chromatin // inferred from direct assay 3697 // single-stranded DNA binding // inferred from direct assay /// 4840 // ubiquitin conjugating enzyme activity // inferred from direct assay /// 8094 // DNA-dependent ATPase activity // inferred from direct assay 259.893768310547 113.993919372559 133.666870117188 260.862152099609 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR066W /GEN=RAD18 /DB_XREF=GI:6319911 /SEG=NC_001135:+231495,232958 /DEF=Protein involved in postreplication repair; binds single-stranded DNA and has single-stranded DNA dependent ATPase activity; forms heterodimer with Rad6p; contains RING-finger motif /NOTE=Rad18p; go_component: nuclear chromatin [goid GO:0000790] [evidence IDA] [pmid 10880451]; go_function: DNA-dependent ATPase activity [goid GO:0008094] [evidence IDA] [pmid 9287349]; go_function: single-stranded DNA binding [goid GO:0003697] [evidence IDA] [pmid 7926769]; go_function: ubiquitin conjugating enzyme activity [goid GO:0004840] [evidence IDA] [pmid 9287349]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 2540415] --- --- --- --- scop // a.140.2.SAP domain // All alpha proteins; LEM/SAP HeH motif; SAP domain; SAP domain // 1.5 --- S0000662 // RAD18 SGDID:S0000662, Chr III from 231495-232958, Verified ORF // sgd // 11 // --- /// GENSCAN00000022504 // cdna:Genscan chromosome:SGD1:III:231495:232958:1 // ensembl // 11 // --- /// GENEFINDER00000023395 // cdna:GeneFinder chromosome:SGD1:III:232053:232958:1 // ensembl // 11 // --- /// YCR066W // cdna:known chromosome:SGD1:III:231495:232958:1 gene:YCR066W // ensembl // 11 // --- --- No cerevisiae_gene -2.00016769450008 -2.27989150422273 1.15862346570342 -1.94433944688534 1.00372607544751 Max fold change below threshold 4 2.27989150422273 Max fold change at or above threshold 0.855445197451745 -0.98568296904909 -0.737427580179465 0.867665351776809 192.104177474976 79.2448084780968 0.412509553512545 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772682_at YFL009W.S1 F-box protein required for G1/S and G2/M transition, associates with Skp1p and Cdc53p to form a complex, SCFCdc4, which acts as ubiquitin-protein ligase directing ubiquitination of the phosphorylated CDK inhibitor Sic1p 2.27968092429993 528.110549926758 669.780914306641 CDC4 82 // G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 86 // G2/M transition of mitotic cell cycle // inferred from genetic interaction /// 86 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 16567 // protein ubiquitination // inferred from genetic interaction /// 16567 // protein ubiquitination // inferred from physical interaction /// 31146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from direct assay 43224 // nuclear SCF ubiquitin ligase complex // inferred from direct assay 4842 // ubiquitin-protein ligase activity // traceable author statement /// 5515 // protein binding // inferred from physical interaction 632.926818847656 474.010162353516 582.2109375 706.635009765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL009W /GEN=CDC4 /DB_XREF=GI:14318513 /SEG=NC_001138:+116139,118478 /DEF=F-box protein which associates with and directs SCF complexes (ubiquitin-protein ligases) to substrates /NOTE=Cdc4p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11080155]; go_component: ubiquitin ligase complex [goid GO:0000151] [evidence TAS] [pmid 9346231]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 9312054]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 9346231]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IMP] [pmid 10409741]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence IGI,IMP] [pmid 10409741]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 9346231] --- --- --- --- --- --- S0001885 // CDC4 SGDID:S0001885, Chr VI from 116139-118478, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018567 // cdna:GeneFinder chromosome:SGD1:VI:116139:118478:1 // ensembl // 11 // --- /// GENSCAN00000023234 // cdna:Genscan chromosome:SGD1:VI:116139:118478:1 // ensembl // 11 // --- /// YFL009W // cdna:known chromosome:SGD1:VI:116139:118478:1 gene:YFL009W // ensembl // 11 // --- --- No cerevisiae_gene -2.27968092429993 -1.33526001996476 -1.15056918922158 -1.08710911815815 1.11645610317503 Max fold change below threshold 4 2.27968092429993 Max fold change at or above threshold 0.34778151583891 -1.27866074968269 -0.171273281667781 1.10215251551156 598.945732116699 97.7081448649986 0.163133552216315 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769834_at YOR025W.S1 Member of the Sir2 family of NAD(+)-dependent protein deacetylases; involved along with Hst4p in telomeric silencing, cell cycle progression, radiation resistance, genomic stability and short-chain fatty acid metabolism 2.27871159958812 897.688018798828 849.48779296875 HST3 6348 // chromatin silencing at telomere // inferred from genetic interaction /// 46459 // short-chain fatty acid metabolism // inferred from mutant phenotype 5634 // nucleus // inferred from curator 3677 // DNA binding // inferred from sequence similarity 777.566040039063 887.540405273438 907.835632324219 921.409545898438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR025W /GEN=HST3 /DB_XREF=GI:6324599 /SEG=NC_001147:+378218,379561 /DEF=Homolog of SIR2 /NOTE=Hst3p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 12242223]; go_function: DNA binding [goid GO:0003677] [evidence ISS] [pmid 7498786]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IGI] [pmid 7498786]; go_process: short-chain fatty acid metabolism [goid GO:0046459] [evidence IMP] [pmid 12618394] --- --- --- --- --- --- S0005551 // HST3 SGDID:S0005551, Chr XV from 378218-379561, Verified ORF // sgd // 11 // --- /// GENSCAN00000017483 // cdna:Genscan chromosome:SGD1:XV:378218:379561:1 // ensembl // 11 // --- /// GENEFINDER00000022697 // cdna:GeneFinder chromosome:SGD1:XV:379058:379561:1 // ensembl // 9 // --- /// YOR025W // cdna:known chromosome:SGD1:XV:378218:379561:1 gene:YOR025W // ensembl // 11 // --- --- No cerevisiae_gene 2.27871159958812 1.14143411565254 -1.3349115910571 1.16753508458087 1.18499201154946 Max fold change below threshold 4 2.27871159958812 Max fold change at or above threshold -1.46575852443972 0.212982686159085 0.522786102218782 0.729989736061852 873.587905883789 65.5100169937136 0.074989610722047 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778352_at YML062C.S1 Subunit of the THO complex, which is a nuclear complex comprised of Hpr1p, Mft1p, Rlr1p, and Thp2p, that is involved in transcription elongation and mitotic recombination 2.27767187644327 210.008613586426 460.329437255859 MFT1 6310 // DNA recombination // inferred from mutant phenotype /// 6368 // RNA elongation from RNA polymerase II promoter // inferred from mutant phenotype /// 6406 // mRNA-nucleus export // inferred from mutant phenotype 347 // THO complex // inferred from mutant phenotype /// 347 // THO complex // inferred from physical interaction 3676 // nucleic acid binding // inferred from direct assay 456.021911621094 200.214050292969 219.803176879883 464.636962890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML062C /GEN=MFT1 /DB_XREF=GI:6323578 /SEG=NC_001145:-147505,148683 /DEF=Protein involved in mitochondrial import of fusion proteins /NOTE=Mft1p; go_component: THO complex [goid GO:0000347] [evidence IMP,IPI] [pmid 11060033]; go_function: nucleic acid binding [goid GO:0003676] [evidence IDA] [pmid 12093753]; go_process: DNA recombination [goid GO:0006310] [evidence IMP] [pmid 11060033]; go_process: RNA elongation from Pol II promoter [goid GO:0006368] [evidence IMP] [pmid 12093753]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 11979277] --- --- --- --- --- --- S0004527 // MFT1 SGDID:S0004527, Chr XIII from 148683-147505, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018665 // cdna:Genscan chromosome:SGD1:XIII:147505:148683:-1 // ensembl // 11 // --- /// GENEFINDER00000021979 // cdna:GeneFinder chromosome:SGD1:XIII:147505:148683:-1 // ensembl // 11 // --- /// YML062C // cdna:known chromosome:SGD1:XIII:147505:148683:-1 gene:YML062C // ensembl // 11 // --- --- No cerevisiae_gene -1.6082357836225 -2.27767187644327 -1.13572225582022 -2.07468298727229 1.0188917485103 Max fold change below threshold 4 2.27767187644327 Max fold change at or above threshold 0.834696539988187 -0.932095660564572 -0.796799130232354 0.894198250808739 335.169025421143 144.786614548159 0.431980891928283 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779523_at SPAC19G12.02c.S1 --- 2.27762895304893 --- --- --- --- 6.16664505004883 10.6861639022827 8.4229850769043 4.72726249694824 0.0805663987994194 0.129638999700546 0.0107421996071935 0.0561522990465164 A A P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19G12.02c /GEN=pms1 /DEF=involved in DNA repair (PMID 9258673) --- --- --- --- --- --- SPAC19G12.02c // |pms1||MutL family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.24177674314456 1.73289751810802 -2.27762895304893 1.36589425993273 -1.30448542978728 Max fold change below threshold 4 2.27762895304893 Max fold change at or above threshold AAAAPM No 4 0 AAPM 2 1 1 No No x = 1
1777834_at YGR100W.S1 Cytoplasmic GTPase-activating protein for Ypt/Rab transport GTPases Ypt6p, Ypt31p and Sec4p; involved in recycling of internalized proteins and regulation of Golgi secretory function 2.27748342101614 522.533477783203 713.721466064453 MDR1 --- 5625 // soluble fraction // traceable author statement /// 5737 // cytoplasm // inferred from direct assay 5097 // Rab GTPase activator activity // inferred from direct assay /// 5097 // Rab GTPase activator activity // inferred from sequence similarity 697.758422851563 479.077087402344 565.989868164063 729.684509277344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR100W /GEN=MDR1 /DB_XREF=GI:6321537 /SEG=NC_001139:+690247,693099 /DEF=Mac1-dependent regulator /NOTE=Mdr1p; go_component: soluble fraction [goid GO:0005625] [evidence TAS] [pmid 10559187]; go_function: Rab GTPase activator activity [goid GO:0005097] [evidence IDA,ISS] [pmid 10559187]; go_process: biological_process unknown [goid GO:0000004] [evidence TAS] [pmid 10559187] --- --- --- --- --- --- S0003332 // MDR1 SGDID:S0003332, Chr VII from 690249-693101, Verified ORF // sgd // 11 // --- /// GENSCAN00000019418 // cdna:Genscan chromosome:SGD1:VII:690249:693101:1 // ensembl // 11 // --- /// GENEFINDER00000021730 // cdna:GeneFinder chromosome:SGD1:VII:690870:693101:1 // ensembl // 11 // --- /// YGR100W // cdna:known chromosome:SGD1:VII:690249:693101:1 gene:YGR100W // ensembl // 11 // --- --- No cerevisiae_gene -2.27748342101614 -1.45646377420167 1.12271386626784 -1.23281080121615 1.04575521467058 Max fold change below threshold 4 2.27748342101614 Max fold change at or above threshold 0.682500309058865 -1.19177190910091 -0.446860551896728 0.956132151938776 618.127471923828 116.675333140203 0.188756103618997 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776565_at YGR131W.S1 Hypothetical protein 2.27702965868311 533.989624023438 398.810913085938 --- --- --- --- 376.881042480469 578.126281738281 489.852966308594 420.740783691406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR131W /GEN=SYF2 /DB_XREF=GI:6321570 /SEG=NC_001139:+754729,755253 /DEF=Hypothetical ORF /NOTE=Ygr131wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003363 // span:10-29,36-58,71-93,124-146 // numtm:4 S0003363 // YGR131W SGDID:S0003363, Chr VII from 754731-755255, Uncharacterized ORF // sgd // 11 // --- /// YGR131W // cdna:known chromosome:SGD1:VII:754731:755255:1 gene:YGR131W // ensembl // 11 // --- --- No cerevisiae_gene 2.27702965868311 1.53397548980788 -1.01560199537513 1.29975485921126 1.11637555691916 Max fold change below threshold 4 2.27702965868311 Max fold change at or above threshold -1.01947776212695 1.2723767942022 0.267087919216027 -0.519986951291276 466.400268554688 87.8089051078988 0.188269413694823 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776590_at YAL048C.S1 Evolutionarily-conserved tail-anchored outer mitochondrial membrane GTPase which regulates mitochondrial morphology; cells lacking Gem1p contain collapsed, globular, or grape-like mitochondria; not required for pheromone-induced cell death 2.27651048261835 100.070318222046 160.014823913574 GEM1 16192 // vesicle-mediated transport // inferred from genetic interaction /// 16192 // vesicle-mediated transport // inferred from mutant phenotype 5741 // mitochondrial outer membrane // inferred from direct assay 3924 // GTPase activity // inferred from direct assay 143.861968994141 63.1940727233887 136.946563720703 176.167678833008 0.00195312988944352 0.00805663969367743 0.00292969006113708 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL048C /GEN=OAF1 /DB_XREF=GI:6319268 /SEG=NC_001133:-52804,54792 /DEF=Yal048cp /NOTE=Yal049cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000046 // span:633-655 // numtm:1 S0000046 // GEM1 SGDID:S0000046, Chr I from 54790-52802, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENEFINDER00000018219 // cdna:GeneFinder chromosome:SGD1:I:52802:54790:-1 // ensembl // 10 // --- /// GENSCAN00000020335 // cdna:Genscan chromosome:SGD1:I:52802:54790:-1 // ensembl // 10 // --- /// YAL048C // cdna:known chromosome:SGD1:I:52802:54790:-1 gene:YAL048C // ensembl // 10 // --- --- No cerevisiae_gene 1.18348851066881 -2.27651048261835 2.12189511863318 -1.05049710694122 1.2245604593399 Max fold change below threshold 4 2.27651048261835 Max fold change at or above threshold 0.289523648604946 -1.40051116898243 0.144642274103623 0.966345246273859 130.04257106781 47.7314996302326 0.367045185574986 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1779099_at YLR095C.S1 Member of a complex (Isw1b) with Isw1p and Ioc4p that exhibits nucleosome-stimulated ATPase activity and acts within coding regions to coordinate transcription elongation with termination and processing, contains a PHD finger motif 2.2759154310705 565.059844970703 1193.22113037109 IOC2 6338 // chromatin remodeling // inferred from physical interaction 16587 // ISW1 complex // inferred from physical interaction 5515 // protein binding // inferred from direct assay 1186.14978027344 521.1748046875 608.944885253906 1200.29248046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR095C /GEN=IOC2 /DB_XREF=GI:6323124 /SEG=NC_001144:-329678,332116 /DEF=Member of a complex (Isw1b) with Isw1p and Ioc4p that exhibits nucleosome-stimulated ATPase activity and acts within coding regions to coordinate transcription elongation with termination and processing, contains a PHD finger motif /NOTE=Ioc2p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 12482963]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 12482963]; go_process: chromatin remodeling [goid GO:0006338] [evidence IPI] [pmid 12482963] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 0.230000004172325 --- S0004085 // IOC2 SGDID:S0004085, Chr XII from 332116-329678, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024665 // cdna:GeneFinder chromosome:SGD1:XII:329678:332071:-1 // ensembl // 11 // --- /// YLR095C // cdna:known chromosome:SGD1:XII:329678:332116:-1 gene:YLR095C // ensembl // 11 // --- --- No cerevisiae_gene -1.30594864889511 -2.2759154310705 -1.41818373410253 -1.9478770722885 1.01192319927088 Max fold change below threshold 4 2.2759154310705 Max fold change at or above threshold 0.842319899352737 -0.982125379679196 -0.741316755281664 0.881122235608122 879.140487670898 364.480635965568 0.414587476150922 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772441_at SPBC14C8.10.S1 --- 2.27553876223414 --- --- --- --- 5.44971561431885 12.4010391235352 5.50711250305176 8.0576696395874 0.24609400331974 0.111571997404099 0.219482004642487 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14C8.10 /GEN=mrpl24 /DEF=mitochondrial ribosomal protein subunit YmL14YmL24 --- --- --- --- --- --- SPBC14C8.10 // |mrpl24||mitochondrial ribosomal protein subunit L28|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.11061274409868 2.27553876223414 2.03193435718384 1.01053208879049 1.47854864544056 Max fold change below threshold 4 2.27553876223414 Max fold change at or above threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1776941_at YDR527W.S1 Protein involved in transcription; interacts with RNA polymerase II subunits Rpb2p, Rpb3, and Rpb11p; has similarity to human RPAP1 2.27464665298109 875.384582519531 582.221282958984 RBA50 6366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype 5665 // DNA-directed RNA polymerase II, core complex // inferred from sequence similarity /// 5737 // cytoplasm // inferred from direct assay 3899 // DNA-directed RNA polymerase activity // inferred from mutant phenotype 538.002624511719 824.880859375 925.888305664063 626.43994140625 0.00292969006113708 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR527W /GEN=SNA2 /DB_XREF=GI:6320735 /SEG=NC_001136:+1491082,1492401 /DEF=Protein required for cell viability /NOTE=Ydr527wp --- --- --- --- --- --- S0002935 // RBA50 SGDID:S0002935, Chr IV from 1491084-1492403, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023471 // cdna:GeneFinder chromosome:SGD1:IV:1491084:1492403:1 // ensembl // 11 // --- /// GENSCAN00000025509 // cdna:Genscan chromosome:SGD1:IV:1491357:1492403:1 // ensembl // 11 // --- /// YDR527W // cdna:known chromosome:SGD1:IV:1491084:1492403:1 gene:YDR527W // ensembl // 11 // --- --- No cerevisiae_gene 2.27464665298109 1.53322831858608 1.09687196350161 1.72097358540654 1.16438082802067 Max fold change below threshold 4 2.27464665298109 Max fold change at or above threshold -1.07245043943312 0.540034843745881 1.10777753328881 -0.575361937601567 728.802932739258 177.910606599586 0.244113461413905 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779157_at YBR150C.S1 Probable Zn-finger protein 2.2743701830323 558.999069213867 388.925689697266 TBS1 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 357.948028564453 631.861328125 486.136810302734 419.903350830078 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR150C /GEN=TBS1 /DB_XREF=GI:6319626 /SEG=NC_001134:-541165,544449 /DEF=Probable Zn-finger protein /NOTE=Tbs1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000354 // TBS1 SGDID:S0000354, Chr II from 544487-541203, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022306 // cdna:GeneFinder chromosome:SGD1:II:541203:544235:-1 // ensembl // 11 // --- /// YBR150C // cdna:known chromosome:SGD1:II:541203:544487:-1 gene:YBR150C // ensembl // 11 // --- --- No cerevisiae_gene 2.2743701830323 1.76523203845841 -1.12148998964778 1.35812121176468 1.17308468638337 Max fold change below threshold 4 2.2743701830323 Max fold change at or above threshold -0.986841040998102 1.34311972338403 0.103558119478294 -0.459836801864221 473.962379455566 117.561335687635 0.24803938199204 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773519_at YOL002C.S1 Membrane protein involved in zinc metabolism, member of the four-protein IZH family, direct target of the Zap1p transcription factor, expression induced by zinc deficiency and fatty acids, deletion increases sensitivity to elevated zinc 2.27423929683762 767.079711914063 461.439727783203 IZH2 6629 // lipid metabolism // traceable author statement /// 6882 // zinc ion homeostasis // inferred from mutant phenotype /// 6882 // zinc ion homeostasis // inferred from sequence similarity /// 10043 // response to zinc ion // inferred from sequence similarity 16020 // membrane // traceable author statement /// 16020 // membrane // inferred from sequence similarity /// 16021 // integral to membrane // inferred from sequence similarity 46872 // metal ion binding // inferred from sequence similarity 460.183868408203 799.730407714844 734.429016113281 462.695587158203 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL002C /GEN=IZH2 /DB_XREF=GI:27808716 /SEG=NC_001147:-323411,324364 /DEF=Membrane protein involved in zinc metabolism, member of the four-protein IZH family, direct target of the Zap1p transcription factor, expression induced by zinc deficiency and fatty acids, deletion increases sensitivity to elevated zinc /NOTE=Izh2p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 9774671]; go_component: membrane [goid GO:0016020] [evidence ISS,TAS] [pmid 15060275]; go_function: metal ion binding [goid GO:0046872] [evidence ISS] [pmid 15060275]; go_process: lipid metabolism [goid GO:0006629] [evidence TAS] [pmid 15060275]; go_process: response to zinc ion [goid GO:0010043] [evidence ISS] [pmid 15060275]; go_process: zinc ion homeostasis [goid GO:0006882] [evidence IMP,ISS] [pmid 15060275] --- --- --- --- --- S0005362 // span:80-99,120-137,152-174,177-199,214-236,245-267,282-301 // numtm:7 S0005362 // IZH2 SGDID:S0005362, Chr XV from 324364-323411, reverse complement, Verified ORF // sgd // 11 // --- /// YOL002C // cdna:known chromosome:SGD1:XV:323411:324364:-1 gene:YOL002C // ensembl // 11 // --- --- No cerevisiae_gene 2.27423929683762 1.73784972185389 1.53662294117667 1.59594689543053 1.00545807648297 Max fold change below threshold 4 2.27423929683762 Max fold change at or above threshold -0.863331089467909 1.03924534262143 0.673342957347616 -0.84925721050114 614.259719848633 178.466701037478 0.290539482356838 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772753_at YOR083W.S1 Protein that regulates the critical cell size required for passage through Start and commitment to cell division; may act upstream of SCB binding factor (SBF) and MCB binding factor (MBF); periodically expressed in G1 2.27361929587103 98.024055480957 176.080207824707 WHI5 82 // G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 8361 // regulation of cell size // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5634 // nucleus // inferred from mutant phenotype /// 5737 // cytoplasm // inferred from direct assay /// 5737 // cytoplasm // inferred from mutant phenotype 16564 // transcriptional repressor activity // inferred from mutant phenotype 160.184295654297 70.4534378051758 125.594673156738 191.976119995117 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR083W /GEN=WHI5 /DB_XREF=GI:6324656 /SEG=NC_001147:+479534,480421 /DEF=Protein that regulates the critical cell size required for passage through Start and commitment to cell division; may act upstream of SCB binding factor (SBF) and MCB binding factor (MBF); periodically expressed in G1 /NOTE=Whi5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: regulation of cell size [goid GO:0008361] [evidence IDA] [pmid 12089449] --- --- --- --- --- --- S0005609 // WHI5 SGDID:S0005609, Chr XV from 479534-480421, Verified ORF // sgd // 11 // --- /// GENSCAN00000017523 // cdna:Genscan chromosome:SGD1:XV:479534:480421:1 // ensembl // 11 // --- /// GENEFINDER00000022729 // cdna:GeneFinder chromosome:SGD1:XV:479534:480421:1 // ensembl // 11 // --- /// YOR083W // cdna:known chromosome:SGD1:XV:479534:480421:1 gene:YOR083W // ensembl // 11 // --- --- No cerevisiae_gene 1.35266994975537 -2.27361929587103 1.30934474317474 -1.27540676390305 1.19847029455017 Max fold change below threshold 4 2.27361929587103 Max fold change at or above threshold 0.444673904310815 -1.28023911698718 -0.22024886226012 1.05581407493648 137.052131652832 52.0205116091006 0.379567329466091 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775536_at YLR061W.S1 Protein component of the large (60S) ribosomal subunit, has similarity to Rpl22Bp and to rat L22 ribosomal protein 2.27349364582062 1602.35821533203 3341.02709960938 RPL22A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3580.89819335938 1629.65234375 1575.06408691406 3101.15600585938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR061W /GEN=RPL22A /DB_XREF=GI:6323090 /SEG=NC_001144:+263195,263949 /DEF=Protein component of the large (60S) ribosomal subunit, has similarity to Rpl22Bp and to rat L22 ribosomal protein /NOTE=Rpl22ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004051 // RPL22A SGDID:S0004051, Chr XII from 263195-263206,263596-263949, intron sequence removed, Verified ORF // sgd // 10 // --- /// YLR061W // cdna:known chromosome:SGD1:XII:263195:263949:1 gene:YLR061W // ensembl // 10 // --- YLR062C // ensembl // 10 // Negative Strand Matching Probes No cerevisiae_gene 1.11843106860615 -2.19733871895607 -1.84725105179714 -2.27349364582062 -1.15469785673264 Max fold change below threshold 4 2.27349364582062 Max fold change at or above threshold 1.08427624248863 -0.82311553435726 -0.876476925092345 0.61531621696097 2471.6926574707 1022.99164403235 0.41388302908145 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772045_at YGR233C.S1 Cyclin-dependent kinase (CDK) inhibitor, regulates Pho80p-Pho85p and Pcl7p-Pho85p cyclin-CDK complexes in response to phosphate levels; required for derepression of PHO5; transcriptionally regulated by Pho4p and Pho2p 2.27284680648741 544.939514160156 1229.60461425781 PHO81 6796 // phosphate metabolism // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4861 // cyclin-dependent protein kinase inhibitor activity // traceable author statement 1191.87329101563 524.396667480469 565.482360839844 1267.3359375 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR233C /GEN=PHO81 /DB_XREF=GI:6321672 /SEG=NC_001139:-954675,958211 /DEF=Cyclin-dependent kinase (CDK) inhibitor, regulates Pho80p-Pho85p and Pcl7p-Pho85p cyclin-CDK complexes in response to phosphate levels; required for derepression of PHO5; transcriptionally regulated by Pho4p and Pho2p /NOTE=Pho81p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: cyclin-dependent protein kinase inhibitor activity [goid GO:0004861] [evidence TAS] [pmid 11102525]; go_process: phosphate metabolism [goid GO:0006796] [evidence TAS] [pmid 11102525] --- --- --- --- --- --- S0003465 // PHO81 SGDID:S0003465, Chr VII from 958212-954676, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019519 // cdna:Genscan chromosome:SGD1:VII:954676:957378:-1 // ensembl // 11 // --- /// YGR233C // cdna:known chromosome:SGD1:VII:954676:958212:-1 gene:YGR233C // ensembl // 11 // --- --- No cerevisiae_gene -1.47698403682179 -2.27284680648741 1.0523009115484 -2.1077108209803 1.063314319612 Max fold change below threshold 4 2.27284680648741 Max fold change at or above threshold 0.767557369324431 -0.91440106077546 -0.810870201617723 0.957713893068752 887.272064208984 396.84489913078 0.447264052525505 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774811_at SPAC27E2.02.S1 --- 2.27265109050925 --- --- --- --- 0.595344424247742 0.453105390071869 0.261960327625275 1.00352942943573 0.850341975688934 0.805908203125 0.753906011581421 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27E2.02 /DEF=RWD domain --- --- --- --- --- --- SPAC27E2.02 // |||RWD domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -2.21828796526684 -1.31392041960329 -1.26641105714065 -2.27265109050925 1.68562833305067 Max fold change below threshold 0 2.27265109050925 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778953_at YNL294C.S1 Protein proposed to be involved in the response to alkaline pH; has similarity to A. nidulans PalH 2.27260631651206 352.349273681641 534.220550537109 RIM21 1403 // invasive growth (sensu Saccharomyces) // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype --- --- 484.953125 294.128601074219 410.569946289063 583.487976074219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL294C /GEN=RIM21 /DB_XREF=GI:6324035 /SEG=NC_001146:-78657,80258 /DEF=Regulator of IME2 /NOTE=Rim21p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: invasive growth (sensu Saccharomyces) [goid GO:0001403] [evidence IMP] [pmid 10821185]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 10821185] --- --- --- --- --- S0005238 // span:94-116,129-151,179-201,210-232,247-269,282-301 // numtm:6 S0005238 // RIM21 SGDID:S0005238, Chr XIV from 80258-78657, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019804 // cdna:Genscan chromosome:SGD1:XIV:78657:79418:-1 // ensembl // 11 // --- /// GENEFINDER00000020473 // cdna:GeneFinder chromosome:SGD1:XIV:78657:80258:-1 // ensembl // 11 // --- /// YNL294C // cdna:known chromosome:SGD1:XIV:78657:80258:-1 gene:YNL294C // ensembl // 11 // --- --- No cerevisiae_gene -2.27260631651206 -1.64877921844 1.02093355813223 -1.18117053959563 1.20318427904598 Max fold change below threshold 4 2.27260631651206 Max fold change at or above threshold 0.341317256293476 -1.22178560849271 -0.267978432452432 1.14844678465166 443.284912109375 122.080592534698 0.27539983698921 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772897_at SPCC613.01.S1 --- 2.27241078755384 --- --- --- --- 6.35703086853027 14.4457855224609 10.1453466415405 6.96398305892944 0.398925989866257 0.0375977009534836 0.0676269978284836 0.149657994508743 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC613.01 /DEF=transporter --- --- --- --- --- --- SPCC613.01 // ||SPCC757.14|membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.55321287821622 2.27241078755384 -1.07653875404177 1.59592533863 1.09547730740208 Max fold change below threshold 4 2.27241078755384 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1777701_at YMR032W.S1 Bud neck-localized, SH3 domain-containing protein required for cytokinesis; regulates actomyosin ring dynamics and septin localization; interacts with the formins, Bni1p and Bnr1p, and with Cyk3p, Vrp1p, and Bni5p 2.27228948453104 307.909225463867 698.48583984375 HOF1 910 // cytokinesis // inferred from mutant phenotype 142 // contractile ring (sensu Saccharomyces) // inferred from direct assay 8092 // cytoskeletal protein binding // inferred from physical interaction 669.087524414063 294.455230712891 321.363220214844 727.884155273438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR032W /GEN=HOF1 /DB_XREF=GI:6323675 /SEG=NC_001145:+335297,337306 /DEF=Bud neck-localized, SH3 domain-containing protein required for cytokinesis; regulates actomyosin ring dynamics and septin localization; interacts with the formins, Bni1p and Bnr1p, and with Cyk3p, Vrp1p, and Bni5p /NOTE=Hof1p; go_component: contractile ring (sensu Saccharomyces) [goid GO:0000142] [evidence IDA] [pmid 10652251]; go_function: cytoskeletal protein binding [goid GO:0008092] [evidence IPI] [pmid 9864366]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251] --- --- --- --- --- --- S0004635 // HOF1 SGDID:S0004635, Chr XIII from 335297-337306, Verified ORF // sgd // 11 // --- /// GENSCAN00000018743 // cdna:Genscan chromosome:SGD1:XIII:335297:337306:1 // ensembl // 11 // --- /// GENEFINDER00000021794 // cdna:GeneFinder chromosome:SGD1:XIII:335297:337306:1 // ensembl // 11 // --- /// YMR032W // cdna:known chromosome:SGD1:XIII:335297:337306:1 gene:YMR032W // ensembl // 11 // --- --- No cerevisiae_gene 1.72814356072112 -2.27228948453104 -1.59412805005778 -2.0820289389892 1.08787584391274 Max fold change below threshold 4 2.27228948453104 Max fold change at or above threshold 0.730666174888526 -0.919410132451035 -0.80089329153307 0.989637249095579 503.197532653809 227.039375109383 0.451193339347278 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772465_at YNL224C.S1 Hypothetical protein 2.27220554591054 151.735290527344 314.44352722168 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 280.407867431641 123.407791137695 180.062789916992 348.479187011719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL224C /GEN=CNM67 /DB_XREF=GI:6324105 /SEG=NC_001146:-224795,227098 /DEF=Hypothetical ORF /NOTE=Ynl224cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005168 // YNL224C SGDID:S0005168, Chr XIV from 227098-224795, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019860 // cdna:Genscan chromosome:SGD1:XIV:224795:226819:-1 // ensembl // 11 // --- /// GENEFINDER00000020452 // cdna:GeneFinder chromosome:SGD1:XIV:224795:226819:-1 // ensembl // 11 // --- /// YNL224C // cdna:known chromosome:SGD1:XIV:224795:227098:-1 gene:YNL224C // ensembl // 11 // --- --- No cerevisiae_gene -1.48373725766801 -2.27220554591054 1.31647995489968 -1.55727825588456 1.2427582371478 Max fold change below threshold 4 2.27220554591054 Max fold change at or above threshold 0.470094337321273 -1.08965314971246 -0.526803155878949 1.14636196827013 233.089408874512 100.657367682331 0.431840160255936 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775397_at YKL046C.S1 Mannosidase, GPI-anchored membrane protein required for cell wall biosynthesis, homologous to Dfg5p 2.27148921834719 449.41259765625 933.619110107422 DCW1 9272 // cell wall biosynthesis (sensu Fungi) // inferred from direct assay 5624 // membrane fraction // inferred from direct assay /// 46658 // anchored to plasma membrane // inferred from direct assay --- 890.980346679688 392.245025634766 506.580169677734 976.257873535156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL046C /GEN=DCW1 /DB_XREF=GI:6322805 /SEG=NC_001143:-350920,352269 /DEF=Mannosidase, GPI-anchored membrane protein required for cell wall biosynthesis, homologous to Dfg5p /NOTE=Dcw1p; go_component: extrinsic to plasma membrane, GPI-anchored [goid GO:0046658] [evidence IDA] [pmid 12421307]; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 12421307]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall biosynthesis (sensu Fungi) [goid GO:0009272] [evidence IDA] [pmid 12421307] --- --- --- --- --- S0001529 // span:429-448 // numtm:1 S0001529 // DCW1 SGDID:S0001529, Chr XI from 352269-350920, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018383 // cdna:Genscan chromosome:SGD1:XI:350920:352269:-1 // ensembl // 11 // --- /// GENEFINDER00000023023 // cdna:GeneFinder chromosome:SGD1:XI:350920:352269:-1 // ensembl // 11 // --- /// YKL046C // cdna:known chromosome:SGD1:XI:350920:352269:-1 gene:YKL046C // ensembl // 11 // --- --- No cerevisiae_gene -1.63327358315034 -2.27148921834719 -1.18593913014797 -1.758814102902 1.09571201786129 Max fold change below threshold 4 2.27148921834719 Max fold change at or above threshold 0.698510344878033 -1.04802497185628 -0.647631499429724 0.997146126407971 691.515853881836 285.556963129415 0.41294347993099 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769586_at YOL028C.S1 Putative basic leucine zipper (bZIP) transcription factor 2.2714598970232 76.5829200744629 174.552383422852 YAP7 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence similarity 5634 // nucleus // inferred from curator /// 5634 // nucleus // inferred from sequence similarity 3702 // RNA polymerase II transcription factor activity // inferred from sequence similarity 172.26399230957 75.8384475708008 77.327392578125 176.840774536133 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL028C /GEN=YAP7 /DB_XREF=GI:6324545 /SEG=NC_001147:-270633,271370 /DEF=basic leucine zipper (bZIP) transcription factor /NOTE=Yap7p; go_component: nucleus [goid GO:0005634] [evidence IC,ISS] [pmid 9372930]; go_function: RNA polymerase II transcription factor activity [goid GO:0003702] [evidence ISS] [pmid 9372930]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence ISS] [pmid 9372930] --- --- --- --- --- --- S0005388 // YAP7 SGDID:S0005388, Chr XV from 271370-270633, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017445 // cdna:Genscan chromosome:SGD1:XV:270633:271370:-1 // ensembl // 10 // --- /// GENEFINDER00000022870 // cdna:GeneFinder chromosome:SGD1:XV:270633:271370:-1 // ensembl // 10 // --- /// YOL028C // cdna:known chromosome:SGD1:XV:270633:271370:-1 gene:YOL028C // ensembl // 10 // --- --- No cerevisiae_gene -1.58306293385444 -2.2714598970232 1.24301419027409 -2.22772275860109 1.02656842074308 Max fold change below threshold 4 2.2714598970232 Max fold change at or above threshold 0.825070143685732 -0.878657323969089 -0.852349393703533 0.90593657398689 125.567651748657 56.5968129113392 0.450727652569519 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774585_at YKR070W.S1 Hypothetical protein 2.27090203682787 416.905044555664 710.347259521484 --- --- 5739 // mitochondrion // inferred from direct assay --- 682.33447265625 300.468475341797 533.341613769531 738.360046386719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR070W /GEN=MET1 /DB_XREF=GI:6322923 /SEG=NC_001143:+573216,574274 /DEF=Hypothetical ORF /NOTE=Ykr070wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 0.709999978542328 --- S0001778 // YKR070W SGDID:S0001778, Chr XI from 573216-574274, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018475 // cdna:Genscan chromosome:SGD1:XI:573216:574274:1 // ensembl // 11 // --- /// GENEFINDER00000023103 // cdna:GeneFinder chromosome:SGD1:XI:573216:574274:1 // ensembl // 11 // --- /// YKR070W // cdna:known chromosome:SGD1:XI:573216:574274:1 gene:YKR070W // ensembl // 11 // --- --- No cerevisiae_gene -1.29306260453955 -2.27090203682787 1.81109236228739 -1.27935727316245 1.08210866660799 Max fold change below threshold 4 2.27090203682787 Max fold change at or above threshold 0.606854566103454 -1.34530112866273 -0.154819057630295 0.893265620189567 563.626152038574 195.612470018787 0.347060670111346 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-BioC-3_at AFFX-BioC-3 --- 2.27086789756244 --- --- --- --- 664.700317382813 755.609497070313 292.707611083984 319.579223632813 4.42872878920753E-5 5.16732470714487E-5 5.16732470714487E-5 4.42872878920753E-5 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --- --- --- --- --- --- J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioC protein corresponding to nucleotides 4609-4883 of J04423 /LEN=777 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// AFFX-BioC-3 // E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioC protein /LEN=777 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// AFFX-BioC-3 // --- // unknown // --- // --- /// AFFX-BioC-3 // --- // unknown // --- // --- /// AFFX-BioC-3 // --- // unknown // --- // --- /// AFFX-BioC-3 // --- // unknown // --- // --- /// AFFX-BioC-3 // --- // gb // --- // --- /// AFFX-BioC-3 // E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-BioC-3 // --- // unknown // --- // --- /// AFFX-BioC-3 // --- // affx // --- // --- /// AFFX-BioC-3 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-BioC-3 // --- // affx // --- // --- /// AFFX-BioC-3 // --- // affx // --- // --- /// AFFX-BioC-3 // --- // affx // --- // --- /// AFFX-BioC-3 // --- // affx // --- // --- /// AFFX-BioC-3 // --- // affx // --- // --- /// AFFX-BioC-3 // --- // affx // --- // --- /// AFFX-BioC-3 // --- // affx // --- // --- /// AFFX-BioC-3 // --- // affx // --- // --- /// AFFX-BioC-3 // --- // affx // --- // --- /// AFFX-BioC-3 // --- // affx // --- // --- /// AFFX-BioC-3 // --- // affx // --- // --- 1037747 // gb // 8 // Cross Hyb Matching Probes /// 26245917 // gb // 8 // Cross Hyb Matching Probes AFFX_control No -1.49156397237064 1.13676716756424 -1.98173620759949 -2.27086789756244 -2.07992343753402 Max fold change below threshold 4 2.27086789756244 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779112_at YDR044W.S1 Coproporphyrinogen III oxidase, an oxygen requiring enzyme that catalyzes the sixth step in the heme biosynthetic pathway; localizes to the mitochondrial inner membrane; transcription is repressed by oxygen and heme (via Rox1p and Hap1p) 2.27051418807716 787.812255859375 958.395568847656 HEM13 6783 // heme biosynthesis // traceable author statement 5743 // mitochondrial inner membrane // inferred from sequence similarity 4109 // coproporphyrinogen oxidase activity // inferred from sequence similarity /// 4109 // coproporphyrinogen oxidase activity // traceable author statement 923.680847167969 642.62890625 932.99560546875 993.110290527344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR044W /GEN=HEM13 /DB_XREF=GI:6320249 /SEG=NC_001136:+546638,547624 /DEF=Coproporphyrinogen III oxidase, an oxygen requiring enzyme that catalyzes the sixth step in the heme biosynthetic pathway; localizes to the mitochondrial inner membrane; transcription is repressed by oxygen and heme (via Rox1p and Hap1p) /NOTE=Hem13p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence ISS] [pmid 31872]; go_function: coproporphyrinogen oxidase activity [goid GO:0004109] [evidence ISS,TAS] [pmid 2838478]; go_process: heme biosynthesis [goid GO:0006783] [evidence TAS] [pmid 2838478] --- --- --- --- --- --- S0002451 // HEM13 SGDID:S0002451, Chr IV from 546639-547625, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023527 // cdna:GeneFinder chromosome:SGD1:IV:546639:547625:1 // ensembl // 11 // --- /// GENSCAN00000025131 // cdna:Genscan chromosome:SGD1:IV:546639:547625:1 // ensembl // 11 // --- /// YDR044W // cdna:known chromosome:SGD1:IV:546639:547625:1 gene:YDR044W // ensembl // 11 // --- --- No cerevisiae_gene 2.27051418807716 -1.43734718152973 -1.01763281549916 1.01008439043566 1.07516605283334 Max fold change below threshold 4 2.27051418807716 Max fold change at or above threshold 0.322761444653644 -1.47079782907821 0.382204446820326 0.765831937604245 873.103912353516 156.700670579559 0.179475396184127 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779180_at SPBC839.07.S1 --- 2.27048003851162 --- --- --- --- 0.308612436056137 0.700698375701904 0.34275558590889 0.456518083810806 0.976073980331421 0.976073980331421 0.994140982627869 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC839.07 /GEN=ibp1 /DEF=rhodanese-like domain --- --- --- --- --- --- SPBC839.07 // |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.3562292407329 2.27048003851162 1.66749017292086 1.11063439402857 1.47926016736333 Max fold change below threshold 0 2.27048003851162 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771026_at SPAC6F12.04.S1 --- 2.26914889584133 --- --- --- --- 5.69418954849243 4.8934383392334 4.50973844528198 5.59148454666138 0.0461426004767418 0.149657994508743 0.111571997404099 0.014160200022161 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F12.04 /DEF=conserved fungal protein --- --- --- --- --- --- SPAC6F12.04 // |||COPI-coated vesicle associated protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.26914889584133 -1.1636377438005 1.30088997428397 -1.26264297089105 -1.01836810975224 Max fold change below threshold 4 2.26914889584133 Max fold change at or above threshold PAAAAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1777517_at YCR045C.S1 Hypothetical protein 2.2690284408444 35.4976320266724 42.5626811981201 --- --- --- 8236 // serine-type peptidase activity // inferred from sequence similarity 35.0684204101563 43.2791862487793 27.7160778045654 50.056941986084 0.00122069998178631 0.0239257998764515 0.018554700538516 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR045C /GEN=PER1 /DB_XREF=GI:6319893 /SEG=NC_001135:-208130,209605 /DEF=Hypothetical ORF /NOTE=Ycr045cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: serine-type peptidase activity [goid GO:0008236] [evidence ISS] [pmid 10592175]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000641 // YCR045C SGDID:S0000641, Chr III from 209605-208130, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022490 // cdna:Genscan chromosome:SGD1:III:208130:209605:-1 // ensembl // 11 // --- /// GENEFINDER00000023393 // cdna:GeneFinder chromosome:SGD1:III:208130:209605:-1 // ensembl // 11 // --- /// YCR045C // cdna:known chromosome:SGD1:III:208130:209605:-1 gene:YCR045C // ensembl // 11 // --- --- No cerevisiae_gene 1.15950112346644 1.23413560527081 2.2690284408444 -1.26527355917509 1.42740794711092 Max fold change below threshold 4 2.2690284408444 Max fold change at or above threshold -0.407648754546406 0.437210240884533 -1.16417901127399 1.13461752493586 39.0301566123962 9.71850436940069 0.248999881448439 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1777617_at YDR058C.S1 Protein with lipolytic activity towards triacylglycerols and diacylglycerols when expressed in E. coli; role in yeast lipid degradation is unclear 2.26901313622827 337.668487548828 748.501007080078 TGL2 6629 // lipid metabolism // inferred from sequence similarity --- 4806 // triacylglycerol lipase activity // inferred from direct assay /// 4806 // triacylglycerol lipase activity // inferred from mutant phenotype 705.840698242188 311.078277587891 364.258697509766 791.161315917969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR058C /GEN=TGL2 /DB_XREF=GI:6320263 /SEG=NC_001136:-567719,568699 /DEF=Triglyceride Lipase /NOTE=Tgl2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: triacylglycerol lipase activity [goid GO:0004806] [evidence IDA,IMP] [pmid 9544243]; go_process: lipid metabolism [goid GO:0006629] [evidence ISS] [pmid 9544243] --- --- --- --- --- --- S0002465 // TGL2 SGDID:S0002465, Chr IV from 568700-567720, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023674 // cdna:GeneFinder chromosome:SGD1:IV:567720:568520:-1 // ensembl // 11 // --- /// GENSCAN00000025142 // cdna:Genscan chromosome:SGD1:IV:567720:568520:-1 // ensembl // 11 // --- /// YDR058C // cdna:known chromosome:SGD1:IV:567720:568700:-1 gene:YDR058C // ensembl // 11 // --- --- No cerevisiae_gene -1.25801567274366 -2.26901313622827 -1.06102797144412 -1.93774562712607 1.1208780081515 Max fold change below threshold 4 2.26901313622827 Max fold change at or above threshold 0.676123596973363 -0.963805304435627 -0.742882280723289 1.03056398818555 543.084747314453 240.719228934331 0.44324431891097 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773410_at SPAC23D3.12.S1 --- 2.26888059168853 --- --- --- --- 8.731032371521 3.84816741943359 17.0351371765137 7.8253960609436 0.129638999700546 0.601073980331421 0.0805663987994194 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23D3.12 /DEF=inorganic phosphate transporter (predicted) --- --- --- --- --- --- SPAC23D3.12 // |||inorganic phosphate transporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.66075611423558 -2.26888059168853 -1.26300757357484 1.95110228110929 -1.11573041204871 Max fold change below threshold 4 2.26888059168853 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769810_at YDR206W.S1 Protein of unknown function, contains a putative RNA recognition motif, deletion results in short telomeres; similar to Est1p, may be partially redundant with Est1p for telomere maintenance 2.26884638144682 358.269744873047 696.605865478516 EBS1 7004 // telomerase-dependent telomere maintenance // inferred from mutant phenotype /// 7004 // telomerase-dependent telomere maintenance // inferred from genetic interaction 5634 // nucleus // inferred from sequence similarity --- 664.360290527344 292.818542480469 423.720947265625 728.851440429688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR206W /GEN=EBS1 /DB_XREF=GI:6320412 /SEG=NC_001136:+862047,864701 /DEF=Protein of unknown function, contains a putative RNA recognition motif, deletion results in short telomeres; similar to Est1p, may be partially redundant with Est1p for telomere maintenance /NOTE=Ebs1p; go_component: nucleus [goid GO:0005634] [evidence ISS] [pmid 10688642]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: telomerase-dependent telomere maintenance [goid GO:0007004] [evidence IGI,IMP] [pmid 10688642] --- --- --- --- scop // a.3.1.Two-domain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; Two-domain cytochrome c // 2.70000004768372 --- S0002614 // EBS1 SGDID:S0002614, Chr IV from 862049-864703, Verified ORF // sgd // 11 // --- /// GENSCAN00000025254 // cdna:Genscan chromosome:SGD1:IV:862049:864703:1 // ensembl // 11 // --- /// GENEFINDER00000023942 // cdna:GeneFinder chromosome:SGD1:IV:862340:864703:1 // ensembl // 11 // --- /// YDR206W // cdna:known chromosome:SGD1:IV:862049:864703:1 gene:YDR206W // ensembl // 11 // --- --- No cerevisiae_gene -1.13782525464938 -2.26884638144682 -1.16609964418835 -1.56791939321061 1.09707255358558 Max fold change below threshold 4 2.26884638144682 Max fold change at or above threshold 0.670462442805053 -1.14885004893044 -0.507865875615399 0.986253481740783 527.437805175781 204.220962443044 0.387194396076676 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774328_at YPR108W-A.S1 Identified by fungal homology and RT-PCR 2.26816994895119 48.2992763519287 52.097261428833 --- --- --- --- 58.7223129272461 55.4433784484863 41.1551742553711 45.4722099304199 0.014160200022161 0.0239257998764515 0.0461426004767418 0.00805663969367743 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR108W-A /GEN=RPN7 /DB_XREF=GI:33438895 /SEG=NC_001148:+744171,744383 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ypr108w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028590 // YPR108W-A SGDID:S0028590, Chr XVI from 744173-744385, Uncharacterized ORF // sgd // 11 // --- /// YPR108W-A // cdna:known chromosome:SGD1:XVI:744173:744385:1 gene:YPR108W-A // ensembl // 11 // --- YHR180W-A // ensembl // 1 // Cross Hyb Matching Probes /// YHR180C-B // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene -2.26816994895119 -1.05914023586795 1.11739112527968 -1.42685127665526 -1.29138902677264 Max fold change below threshold 4 2.26816994895119 Max fold change at or above threshold 1.03297416514079 0.635621149236634 -1.09587457437909 -0.572720739998328 50.1982688903809 8.25194310227833 0.164387005462246 PPPPPP Called_P_>2EXP 4 0 PPPP 0 4 0 Yes Yes 3 < x
1778885_at YCL002C.S1 Hypothetical protein 2.26813715954988 556.816864013672 295.700714111328 --- --- --- --- 256.198089599609 532.541320800781 581.092407226563 335.203338623047 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL002C /GEN=PGS1 /DB_XREF=GI:37362626 /SEG=NC_001135:-110842,111673 /DEF=Hypothetical ORF /NOTE=Ycl002cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000508 // span:2-19,39-61,118-140,155-174,181-203,223-245 // numtm:6 S0000508 // YCL002C SGDID:S0000508, Chr III from 111673-111632,111555-110842, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YCL002C // cdna:known chromosome:SGD1:III:110842:111673:-1 gene:YCL002C // ensembl // 11 // --- --- No cerevisiae_gene 1.78273621311672 2.07863111560686 1.54568993170897 2.26813715954988 1.30837563678522 Max fold change below threshold 4 2.26813715954988 Max fold change at or above threshold -1.09408739232277 0.683769844333566 0.996123796244788 -0.585806248255585 426.2587890625 155.436120237021 0.364652000675182 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778684_at SPAC1556.05c.S1 --- 2.2673294367494 --- --- --- --- 6.81081533432007 5.9075756072998 3.00389313697815 4.44018173217773 0.0461426004767418 0.466064006090164 0.303710997104645 0.129638999700546 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1556.05c /DEF=CGR1 family --- --- --- --- --- --- SPAC1556.05c // |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.26316955442042 -1.15289516157934 1.02240068219457 -2.2673294367494 -1.53390463389426 Max fold change below threshold 4 2.2673294367494 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1775684_at SPBC1734.09.S1 --- 2.26720287749707 --- --- --- --- 0.595471203327179 0.681687235832214 1.35005402565002 0.293710261583328 0.870360970497131 0.932372987270355 0.725830018520355 0.995850026607513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1734.09 /DEF=NST UDP-N-acetylglucosamine transporter --- --- --- --- --- --- SPBC1734.09 // |||NST UDP-N-acetylglucosamine transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.27335172512419 1.14478623319366 -1.3532083666262 2.26720287749707 -2.02741027881397 Max fold change below threshold 0 2.26720287749707 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775218_at YHR183W.S1 6-phosphogluconate dehydrogenase (decarboxylating), catalyzes an NADPH regenerating reaction in the pentose phosphate pathway; required for growth on D-glucono-delta-lactone and adaptation to oxidative stress 2.2668332236375 1142.55584716797 2381.34228515625 GND1 6006 // glucose metabolism // inferred from genetic interaction /// 6006 // glucose metabolism // inferred from mutant phenotype /// 6979 // response to oxidative stress // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4616 // phosphogluconate dehydrogenase (decarboxylating) activity // inferred from mutant phenotype 2348.07202148438 1035.83801269531 1249.27368164063 2414.61254882813 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR183W /GEN=GND1 /DB_XREF=GI:6321977 /SEG=NC_001140:+470958,472427 /DEF=6-phosphogluconate dehydrogenase, decarboxylating; converts 6-phosphogluconate + NADP to ribulose-5-phosphate + NADPH + CO2 /NOTE=Gnd1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: phosphogluconate dehydrogenase (decarboxylating) activity [goid GO:0004616] [evidence IMP] [pmid 1328471]; go_process: glucose metabolism [goid GO:0006006] [evidence IGI,IMP] [pmid 1328471] --- --- --- --- --- --- S0001226 // GND1 SGDID:S0001226, Chr VIII from 470959-472428, Verified ORF // sgd // 11 // --- /// GENSCAN00000016706 // cdna:Genscan chromosome:SGD1:VIII:470959:472428:1 // ensembl // 11 // --- /// GENEFINDER00000020136 // cdna:GeneFinder chromosome:SGD1:VIII:470959:472428:1 // ensembl // 11 // --- /// YHR183W // cdna:known chromosome:SGD1:VIII:470959:472428:1 gene:YHR183W // ensembl // 11 // --- --- No cerevisiae_gene 1.39342751590479 -2.2668332236375 -1.12495754084033 -1.87954973837337 1.02833836727959 Max fold change below threshold 4 2.2668332236375 Max fold change at or above threshold 0.812914938684909 -1.00706945044125 -0.711047869716002 0.905202381472344 1761.94906616211 721.013881563629 0.409213804990485 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777853_at YER145C.S1 High affinity iron permease involved in the transport of iron across the plasma membrane; forms complex with Fet3p; expression is regulated by iron 2.26645992275489 178.096206665039 355.310333251953 FTR1 6827 // high affinity iron ion transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay 5381 // iron ion transporter activity // inferred from direct assay 344.790679931641 152.127410888672 204.065002441406 365.829986572266 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER145C /GEN=FTR1 /DB_XREF=GI:6320993 /SEG=NC_001137:-460521,461735 /DEF=High affinity iron permease involved in the transport of iron across the plasma membrane; forms complex with Fet3p; expression is regulated by iron /NOTE=Ftr1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 10748025]; go_function: iron ion transporter activity [goid GO:0005381] [evidence IDA] [pmid 8599111]; go_process: high affinity iron ion transport [goid GO:0006827] [evidence IMP] [pmid 8599111] --- --- --- --- --- S0000947 // span:10-32,51-73,88-110,149-171,181-203,210-232,292-314 // numtm:7 S0000947 // FTR1 SGDID:S0000947, Chr V from 461735-460521, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000016924 // cdna:Genscan chromosome:SGD1:V:460521:461735:-1 // ensembl // 10 // --- /// GENEFINDER00000019666 // cdna:GeneFinder chromosome:SGD1:V:460521:461735:-1 // ensembl // 10 // --- /// YER145C // cdna:known chromosome:SGD1:V:460521:461735:-1 gene:YER145C // ensembl // 10 // --- --- No cerevisiae_gene 1.74393059506195 -2.26645992275489 -1.28142671491085 -1.6896120148316 1.06102052017414 Max fold change below threshold 4 2.26645992275489 Max fold change at or above threshold 0.744817217167707 -1.09285315694726 -0.597459438292681 0.945495378072233 266.703269958496 104.841037738205 0.393099933699802 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778417_at SPCC663.14c.S1 --- 2.26639733728838 --- --- --- --- 9.21606636047363 11.7714385986328 4.67466449737549 5.14412021636963 0.2119140625 0.0461426004767418 0.149657994508743 0.030273400247097 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC663.14c /DEF=conserved fungal protein --- --- --- --- --- --- SPCC663.14c // |||membrane transporter |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.40357095031397 1.27727363695196 -2.26639733728838 -1.97149257784122 -1.79157289737247 Max fold change below threshold 4 2.26639733728838 Max fold change at or above threshold AMPAAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1772355_at SPAC25G10.05c.S1 --- 2.26622841332524 --- --- --- --- 3.93137860298157 8.35565376281738 8.20129871368408 6.37916469573975 0.274170011281967 0.219482004642487 0.091552734375 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25G10.05c /GEN=his1 /DEF=ATP phosphoribosyltransferase (PMID 7732725) --- --- --- --- --- --- U07830 // Schizosaccharomyces pombe ATP phosphoribosyltransferase (his1) mRNA, complete cds. // gb // 11 // --- /// SPAC25G10.05c // |his1||ATP phosphoribosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.26622841332524 2.12537499097147 1.5893957796031 2.08611266985688 1.62262792265842 Max fold change below threshold 4 2.26622841332524 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779441_at YJL078C.S1 Protein of unknown function, has similarity to Pry1p and Pry2p and to the plant PR-1 class of pathogen related proteins 2.26554099585698 361.465682983398 277.515808105469 PRY3 --- 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 268.145233154297 208.609100341797 514.322265625 286.886383056641 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL078C /GEN=PRY3 /DB_XREF=GI:6322383 /SEG=NC_001142:-291252,293897 /DEF=Protein of unknown function, has similarity to Pry1p and Pry2p and to the plant PR-1 class of pathogen related proteins /NOTE=Pry3p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003614 // span:858-880 // numtm:1 S0003614 // PRY3 SGDID:S0003614, Chr X from 293897-291252, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024079 // cdna:Genscan chromosome:SGD1:X:291252:293897:-1 // ensembl // 11 // --- /// GENEFINDER00000024435 // cdna:GeneFinder chromosome:SGD1:X:291252:294384:-1 // ensembl // 11 // --- /// YJL078C // cdna:known chromosome:SGD1:X:291252:293897:-1 gene:YJL078C // ensembl // 11 // --- --- No cerevisiae_gene 2.26554099585698 -1.28539566449859 -1.10933307510372 1.91807349910654 1.06989178842333 Max fold change below threshold 4 2.26554099585698 Max fold change at or above threshold -0.382871855202524 -0.826819311570387 1.45281451236435 -0.243123345591442 319.490745544434 134.106259555111 0.419750059822814 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776825_at YBR029C.S1 Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase); an enzyme that catalyzes that conversion of CTP + phosphate into diphosphate + CDP-diaclglyerol, a critical step in the synthesis of all major yeast phospholipids 2.26520038561425 1417.78308105469 701.493225097656 CDS1 6655 // phosphatidylglycerol biosynthesis // traceable author statement /// 6658 // phosphatidylserine metabolism // traceable author statement 5739 // mitochondrion // traceable author statement /// 5783 // endoplasmic reticulum // traceable author statement 4605 // phosphatidate cytidylyltransferase activity // inferred from direct assay 689.279235839844 1274.21057128906 1561.35559082031 713.707214355469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR029C /GEN=CDS1 /DB_XREF=GI:6319503 /SEG=NC_001134:-296331,297704 /DEF=CDP-diacylglycerol synthase, CTP-phosphatidic acid cytidylyltransferase, CDP-diglyceride synthetase /NOTE=Cds1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS]; go_component: mitochondrion [goid GO:0005739] [evidence TAS]; go_function: phosphatidate cytidylyltransferase activity [goid GO:0004605] [evidence IDA] [pmid 8557688]; go_process: phosphatidylglycerol biosynthesis [goid GO:0006655] [evidence TAS]; go_process: phosphatidylserine metabolism [goid GO:0006658] [evidence TAS] --- --- --- --- --- S0000233 // span:67-89,156-178,185-207,217-239,252-274,328-350 // numtm:6 S0000233 // CDS1 SGDID:S0000233, Chr II from 297742-296369, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021162 // cdna:Genscan chromosome:SGD1:II:296369:297742:-1 // ensembl // 11 // --- /// GENEFINDER00000022129 // cdna:GeneFinder chromosome:SGD1:II:296369:297742:-1 // ensembl // 11 // --- /// YBR029C // cdna:known chromosome:SGD1:II:296369:297742:-1 gene:YBR029C // ensembl // 11 // --- --- No cerevisiae_gene -1.11492091354567 1.84861302217601 1.02412196560552 2.26520038561425 1.03543988741495 Max fold change below threshold 4 2.26520038561425 Max fold change at or above threshold -0.861380831188285 0.499052565898825 1.16689449999103 -0.80456623470157 1059.63815307617 429.959553111269 0.405760732437841 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769385_at YEL006W.S1 Hypothetical protein 2.26470335126656 1016.70648193359 522.280944824219 --- 6810 // transport // inferred from sequence similarity 5743 // mitochondrial inner membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity 454.623840332031 1003.82482910156 1029.58813476563 589.938049316406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL006W /GEN=GCN4 /DB_XREF=GI:6320831 /SEG=NC_001137:+144326,145333 /DEF=Hypothetical ORF /NOTE=Yel006wp; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence ISS] [pmid 10930523]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 10930523]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 10930523] --- --- --- --- --- S0000732 // span:40-62,103-122,197-219 // numtm:3 S0000732 // YEL006W SGDID:S0000732, Chr V from 144326-145333, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000016799 // cdna:Genscan chromosome:SGD1:V:144326:145333:1 // ensembl // 10 // --- /// YEL006W // cdna:known chromosome:SGD1:V:144326:145333:1 gene:YEL006W // ensembl // 10 // --- --- No cerevisiae_gene 1.42090233047824 2.20803385138893 1.9227577905358 2.26470335126656 1.29763993213719 Max fold change below threshold 4 2.26470335126656 Max fold change at or above threshold -1.08223911355125 0.805419383261889 0.893970430760404 -0.61715070047104 769.493713378906 290.942980256612 0.378096630548232 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778474_at YPL194W.S1 DNA damage checkpoint protein, part of a PCNA-like complex required for DNA damage response, required for pachytene checkpoint to inhibit cell cycle in response to unrepaired recombination intermediates; potential Cdc28p substrate 2.26458225995147 51.8269233703613 81.0503005981445 DDC1 75 // cell cycle checkpoint // inferred from mutant phenotype /// 7126 // meiosis // inferred from mutant phenotype 794 // condensed nuclear chromosome // inferred from direct assay --- 74.9480285644531 33.0957412719727 70.55810546875 87.1525726318359 0.018554700538516 0.0239257998764515 0.0239257998764515 0.014160200022161 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL194W /GEN=DDC1 /DB_XREF=GI:6325062 /SEG=NC_001148:+179276,181114 /DEF=DNA damage checkpoint protein, part of a PCNA-like complex required for DNA damage response, required for pachytene checkpoint to inhibit cell cycle in response to unrepaired recombination intermediates; potential Cdc28p substrate /NOTE=Ddc1p; go_component: condensed nuclear chromosome [goid GO:0000794] [evidence IDA] [pmid 11825877]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell cycle checkpoint [goid GO:0000075] [evidence IMP] [pmid 11825877]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 11825877] --- --- --- --- --- --- S0006115 // DDC1 SGDID:S0006115, Chr XVI from 179276-181114, Verified ORF // sgd // 11 // --- /// GENSCAN00000017039 // cdna:Genscan chromosome:SGD1:XVI:179405:181114:1 // ensembl // 11 // --- /// GENEFINDER00000020838 // cdna:GeneFinder chromosome:SGD1:XVI:180125:181114:1 // ensembl // 11 // --- /// YPL194W // cdna:known chromosome:SGD1:XVI:179276:181114:1 gene:YPL194W // ensembl // 11 // --- --- No cerevisiae_gene -1.35531040724481 -2.26458225995147 1.5449545522471 -1.06221713390033 1.16284009467824 Max fold change below threshold 4 2.26458225995147 Max fold change at or above threshold 0.365040083844027 -1.43035473768344 0.176719547433457 0.888595106405953 66.4386119842529 23.3109101077132 0.350863893924188 PPPPPP Called_P_>2EXP 4 0 PPPP 0 4 0 Yes Yes 3 < x
1775359_at SPAC57A10.11c.S1 --- 2.2644804952959 --- --- --- --- 1.49250400066376 1.56655406951904 1.91170060634613 1.35690748691559 0.398925989866257 0.665526986122131 0.567627012729645 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC57A10.11c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC57A10.11c // |tim40||mitochondrial inner membrane protein insertion complex subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.22225178511872 1.04961465351004 2.2644804952959 1.28086799465592 -1.09993055168145 Max fold change below threshold 0 2.2644804952959 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771276_at YPL057C.S1 Probable catalytic subunit of a mannosylinositol phosphorylceramide (MIPC) synthase, forms a complex with probable regulatory subunit Csg2p; function in sphingolipid biosynthesis is overlapping with that of Csh1p 2.2644062197583 4753.49365234375 2322.78076171875 SUR1 6675 // mannose inositol phosphoceramide metabolism // inferred from mutant phenotype /// 6688 // glycosphingolipid biosynthesis // inferred from mutant phenotype /// 6688 // glycosphingolipid biosynthesis // inferred from sequence similarity /// 30148 // sphingolipid biosynthesis // traceable author statement /// 30148 // sphingolipid biosynthesis // inferred from mutant phenotype 5622 // intracellular // inferred from curator 30 // mannosyltransferase activity // inferred from genetic interaction /// 30 // mannosyltransferase activity // inferred from mutant phenotype /// 16757 // transferase activity, transferring glycosyl groups // inferred from sequence similarity 2305.8447265625 5221.369140625 4285.6181640625 2339.716796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL057C /GEN=SUR1 /DB_XREF=GI:6325200 /SEG=NC_001148:-451904,453052 /DEF=Probable catalytic subunit of a mannosylinositol phosphorylceramide (MIPC) synthase, forms a complex with probable regulatory subunit Csg2p; function in sphingolipid biosynthesis is overlapping with that of Csh1p /NOTE=Sur1p; go_component: intracellular [goid GO:0005622] [evidence IC] [pmid 10931938]; go_function: mannosyltransferase activity [goid GO:0000030] [evidence IGI,IMP] [pmid 12954640]; go_function: transferase activity, transferring glycosyl groups [goid GO:0016757] [evidence ISS] [pmid 9653120]; go_process: mannose inositol phosphoceramide metabolism [goid GO:0006675] [evidence IMP] [pmid 9323360]; go_process: sphingolipid biosynthesis [goid GO:0030148] [evidence TAS] [pmid 10366774]; go_process: sphingolipid biosynthesis [goid GO:0030148] [evidence IMP] [pmid 12954640] --- --- --- --- --- S0005978 // span:7-29,194-213,266-288 // numtm:3 S0005978 // SUR1 SGDID:S0005978, Chr XVI from 453054-451906, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017146 // cdna:Genscan chromosome:SGD1:XVI:451906:453054:-1 // ensembl // 11 // --- /// GENEFINDER00000020813 // cdna:GeneFinder chromosome:SGD1:XVI:451906:453054:-1 // ensembl // 11 // --- /// YPL057C // cdna:known chromosome:SGD1:XVI:451906:453054:-1 gene:YPL057C // ensembl // 11 // --- --- No cerevisiae_gene 1.54307582845055 2.2644062197583 1.27594184699632 1.85858922532542 1.01468965794717 Max fold change below threshold 4 2.2644062197583 Max fold change at or above threshold -0.84722468545857 1.15725419743722 0.513907476304796 -0.823936988283446 3538.13720703125 1454.5049284084 0.411093421000718 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777235_at SPCC364.04c.S1 --- 2.26435900953277 --- --- --- --- 3.9557466506958 8.95723056793213 5.23113346099854 4.28753328323364 0.334473013877869 0.334473013877869 0.171387001872063 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC364.04c /DEF=localization Golgi membrane (predicted) --- --- --- --- --- --- SPCC364.04c // |||CASP family protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.22330132214009 2.26435900953277 -1.28021981540845 1.32241367380755 1.08387459102809 Max fold change below threshold 4 2.26435900953277 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772326_at YBR168W.S1 Peroxisomal integral membrane protein, involved in negative regulation of peroxisome size; partially functionally redundant with Pex31p; genetic interactions suggest action at a step downstream of steps mediated by Pex28p and Pex29p 2.26425065005722 176.44019317627 384.012756347656 PEX32 7031 // peroxisome organization and biogenesis // inferred from mutant phenotype 5779 // integral to peroxisomal membrane // inferred from direct assay --- 343.048553466797 151.506439208984 201.373947143555 424.976959228516 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR168W /GEN=PEX32 /DB_XREF=GI:6319645 /SEG=NC_001134:+572328,573569 /DEF=Peroxisomal integral membrane protein, involved in negative regulation of peroxisome size; partially functionally redundant with Pex31p; genetic interactions suggest action at a step downstream of steps mediated by Pex28p and Pex29p /NOTE=Pex32p; go_component: integral to peroxisomal membrane [goid GO:0005779] [evidence IDA] [pmid 14617799]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence IMP] [pmid 14617799] --- --- --- --- --- S0000372 // span:67-84,99-121,178-197,207-226 // numtm:4 S0000372 // PEX32 SGDID:S0000372, Chr II from 572366-573607, Verified ORF // sgd // 11 // --- /// GENSCAN00000021275 // cdna:Genscan chromosome:SGD1:II:572714:573607:1 // ensembl // 11 // --- /// YBR168W // cdna:known chromosome:SGD1:II:572366:573607:1 gene:YBR168W // ensembl // 11 // --- --- No cerevisiae_gene -1.56686341293089 -2.26425065005722 1.45744045355335 -1.70353989844697 1.23882451896025 Max fold change below threshold 4 2.26425065005722 Max fold change at or above threshold 0.498285221128948 -1.02096735258629 -0.625433764226775 1.14811589568412 280.226474761963 126.07654419792 0.449909468065124 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775420_at SPCC1827.05c.S1 --- 2.26406832989315 --- --- --- --- 4.93421506881714 4.55511140823364 11.1714000701904 7.70139694213867 0.149657994508743 0.171387001872063 0.0676269978284836 0.0239257998764515 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1827.05c /DEF=rrm RNA recognition motif --- --- --- --- --- --- SPCC1827.05c // |||rrm RNA recognition motif|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -1.62492888442571 -1.08322599089415 1.59920906851786 2.26406832989315 1.56081501003257 Max fold change below threshold 4 2.26406832989315 Max fold change at or above threshold AAAPAP No 4 0 AAAP 3 1 0 No No x = 1
1774759_at YDR286C.S1 Hypothetical protein 2.26343165291833 150.140182495117 337.245376586914 --- --- --- --- 296.959808349609 169.081436157227 131.198928833008 377.530944824219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR286C /GEN=ZIP1 /DB_XREF=GI:6320492 /SEG=NC_001136:-1035223,1035567 /DEF=Hypothetical ORF /NOTE=Ydr286cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002694 // YDR286C SGDID:S0002694, Chr IV from 1035569-1035225, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDR286C // cdna:known chromosome:SGD1:IV:1035225:1035569:-1 gene:YDR286C // ensembl // 11 // --- --- No cerevisiae_gene -1.60418310424311 -1.75631231375082 1.40586288107047 -2.26343165291833 1.27132000428743 Max fold change below threshold 4 2.26343165291833 Max fold change at or above threshold 0.467352044679938 -0.654621905269572 -0.986993874413832 1.17426373500347 243.692779541016 113.976239999278 0.46770462470799 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779627_at YHR079C-A.S1 Meiosis specific protein involved in DMC1-dependent meiotic recombination, forms heterodimer with Mei5p; proposed to be an assembly factor for Dmc1p 2.26251927360985 28.6342515945435 34.2017660140991 SAE3 707 // meiotic DNA recombinase assembly // inferred from mutant phenotype /// 6302 // double-strand break repair // traceable author statement /// 7131 // meiotic recombination // inferred from mutant phenotype 794 // condensed nuclear chromosome // inferred from direct assay --- 31.1154766082764 35.5125122070313 21.7559909820557 37.2880554199219 0.00122069998178631 0.0107421996071935 0.00585938012227416 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR079C-A /GEN=SAE3 /DB_XREF=GI:6321871 /SEG=NC_001140:-262402,262554 /DEF=Involved in meiotic recombination and chromosome metabolism /NOTE=Sae3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: double-strand break repair [goid GO:0006302] [evidence TAS] [pmid 11825877]; go_process: meiotic recombination [goid GO:0007131] [evidence IMP] [pmid 9215889] --- --- --- --- --- --- S0001957 // SAE3 SGDID:S0001957, Chr VIII from 262554-262402, reverse complement, Verified ORF // sgd // 10 // --- /// YHR079C-A // cdna:known chromosome:SGD1:VIII:262402:262554:-1 gene:YHR079C-A // ensembl // 10 // --- --- No cerevisiae_gene -2.26251927360985 1.14131345806175 -1.94786224917207 -1.4302026799855 1.1983764828466 Max fold change below threshold 4 2.26251927360985 Max fold change at or above threshold -0.0435657513784622 0.58962358252357 -1.39136618106125 0.845308349916139 31.4180088043213 6.94426668822441 0.221028224018744 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1770591_at SPBC17G9.04c.S1 --- 2.26236496561717 --- --- --- --- 4.65058279037476 8.80629730224609 7.00441694259644 6.13571166992188 0.303710997104645 0.24609400331974 0.129638999700546 0.018554700538516 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17G9.04c /GEN=nup85 /DEF=nucleoporin --- --- --- --- --- --- SPBC17G9.04c // |nup85||nucleoporin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.18531028781177 1.89359005079371 2.26236496561717 1.50613745810383 1.31934253113843 Max fold change below threshold 4 2.26236496561717 Max fold change at or above threshold AAAPAP No 4 0 AAAP 3 1 0 No No x = 1
1771992_at YPL043W.S1 Nucleolar protein, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis; constituent of 66S pre-ribosomal particles; contains four RNA recognition motifs (RRMs) 2.26224375358292 231.871368408203 520.337829589844 NOP4 6364 // rRNA processing // traceable author statement 5730 // nucleolus // traceable author statement 3723 // RNA binding // inferred from sequence similarity 516.822143554688 235.287185668945 228.455551147461 523.853515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL043W /GEN=NOP4 /DB_XREF=GI:6325213 /SEG=NC_001148:+469934,471991 /DEF=Nucleolar protein, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis; contains four RNA recognition motifs (RRMs) /NOTE=Nop4p; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 10690410]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 9312154]; go_process: rRNA processing [goid GO:0006364] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0005964 // NOP4 SGDID:S0005964, Chr XVI from 469936-471993, Verified ORF // sgd // 11 // --- /// GENSCAN00000017155 // cdna:Genscan chromosome:SGD1:XVI:469936:471993:1 // ensembl // 11 // --- /// GENEFINDER00000020923 // cdna:GeneFinder chromosome:SGD1:XVI:469936:471993:1 // ensembl // 11 // --- /// YPL043W // cdna:known chromosome:SGD1:XVI:469936:471993:1 gene:YPL043W // ensembl // 11 // --- --- No cerevisiae_gene -1.31189025231024 -2.19655882272258 -1.63614910465156 -2.26224375358292 1.01360501317136 Max fold change below threshold 4 2.26224375358292 Max fold change at or above threshold 0.844672163109878 -0.845271636146292 -0.886279255537744 0.886878728574157 376.104598999023 166.594272548981 0.442946650991133 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772084_at YBL016W.S1 Mitogen-activated protein kinase involved in mating pheromone response; activated by phoshporylation by Ste7p; provides specificity during the mating vs. filamentous growth response by phosphorylating transcriptional and cytoplasmic targets 2.26222103015043 52.1685199737549 93.7507514953613 FUS3 750 // signal transduction during conjugation with cellular fusion // inferred from direct assay /// 1402 // signal transduction during filamentous growth // inferred from mutant phenotype /// 1403 // invasive growth (sensu Saccharomyces) // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // traceable author statement /// 7050 // cell cycle arrest // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay 4707 // MAP kinase activity // traceable author statement /// 4707 // MAP kinase activity // inferred from direct assay 88.7047653198242 39.2113609313965 65.1256790161133 98.7967376708984 0.00122069998178631 0.030273400247097 0.030273400247097 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL016W /GEN=FUS3 /DB_XREF=GI:6319455 /SEG=NC_001134:+192416,193477 /DEF=Mitogen-activated protein kinase (MAPK) involved in mating pheromone response; activated by phosporylation by Ste7p; controls different aspects of the mating response by phosphorylating transcriptional and cytoplasmic targets /NOTE=Fus3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10233162]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10233162]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 11781566]; go_function: MAP kinase activity [goid GO:0004707] [evidence TAS] [pmid 8384702]; go_process: cell cycle arrest [goid GO:0007050] [evidence TAS] [pmid 10049917]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 8384702]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence IDA] [pmid 8384702] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 8.0E-85 /// hanks // 3.1.7 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; PCTAIRE1 // 3.0E-82 --- --- S0000112 // FUS3 SGDID:S0000112, Chr II from 192454-193515, Verified ORF // sgd // 11 // --- /// GENSCAN00000021125 // cdna:Genscan chromosome:SGD1:II:192454:193515:1 // ensembl // 11 // --- /// GENEFINDER00000022325 // cdna:GeneFinder chromosome:SGD1:II:192454:193515:1 // ensembl // 11 // --- /// YBL016W // cdna:known chromosome:SGD1:II:192454:193515:1 gene:YBL016W // ensembl // 11 // --- --- No cerevisiae_gene 1.02944383841656 -2.26222103015043 1.08881531501041 -1.36205513186092 1.11377035173576 Max fold change below threshold 4 2.26222103015043 Max fold change at or above threshold 0.592886307742426 -1.27079868935769 -0.294989358370163 0.972901739985431 72.9596357345581 26.5567434761986 0.3639922706415 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1772287_at YHR018C.S1 Argininosuccinate lyase, catalyzes the final step in the arginine biosynthesis pathway 2.26185950810322 3547.3896484375 1740.87054443359 ARG4 6526 // arginine biosynthesis // traceable author statement 5829 // cytosol // inferred from direct assay 4056 // argininosuccinate lyase activity // inferred from direct assay 1667.86511230469 3322.302734375 3772.4765625 1813.8759765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR018C /GEN=ARG4 /DB_XREF=GI:6321806 /SEG=NC_001140:-140003,141394 /DEF=Argininosuccinate lyase, catalyzes the final step in the arginine biosynthesis pathway /NOTE=Arg4p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 205532]; go_function: argininosuccinate lyase activity [goid GO:0004056] [evidence IDA] [pmid 6386606]; go_process: arginine biosynthesis [goid GO:0006526] [evidence TAS] [pmid 6386606] --- --- --- --- --- --- S0001060 // ARG4 SGDID:S0001060, Chr VIII from 141394-140003, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016567 // cdna:Genscan chromosome:SGD1:VIII:140003:141394:-1 // ensembl // 11 // --- /// GENEFINDER00000020196 // cdna:GeneFinder chromosome:SGD1:VIII:140003:141394:-1 // ensembl // 11 // --- /// YHR018C // cdna:known chromosome:SGD1:VIII:140003:141394:-1 gene:YHR018C // ensembl // 11 // --- --- No cerevisiae_gene 1.39081402232911 1.99194929485885 -1.07957262260003 2.26185950810322 1.08754356882977 Max fold change below threshold 4 2.26185950810322 Max fold change at or above threshold -0.920363404572859 0.639340023546771 1.06373660012949 -0.782713219103406 2644.13009643555 1060.73859442939 0.401167323748301 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778549_at SPCC550.10.S1 --- 2.26121990328714 --- --- --- --- 0.926775217056274 0.631065368652344 2.09564256668091 0.832865715026855 0.601073980331421 0.943848013877869 0.5 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC550.10 /GEN=meu8 /DEF=betaine aldehyde dehydrogenase (predicted) --- --- --- --- --- --- SPCC550.10 // |meu8||betaine aldehyde dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- AB054529 // gb // 4 // Cross Hyb Matching Probes No No -1.38674242566131 -1.46858830018739 1.54206999063845 2.26121990328714 -1.11275467381484 Max fold change below threshold 0 2.26121990328714 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779536_at YPR051W.S1 Catalytic subunit of N-terminal acetyltransferase of the NatC type; required for replication of dsRNA virus 2.26078439363278 248.305961608887 466.447067260742 MAK3 6474 // N-terminal protein amino acid acetylation // inferred from direct assay 5737 // cytoplasm // inferred from curator 4596 // peptide alpha-N-acetyltransferase activity // inferred from direct assay 441.022094726563 195.074813842773 301.537109375 491.872039794922 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR051W /GEN=MAK3 /DB_XREF=GI:6325307 /SEG=NC_001148:+664955,665485 /DEF=N-acetyltransferase /NOTE=Mak3p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 11274203]; go_function: peptide alpha-N-acetyltransferase activity [goid GO:0004596] [evidence IDA] [pmid 11274203]; go_process: N-terminal protein amino acid acetylation [goid GO:0006474] [evidence IDA] [pmid 11274203]; go_process: host-pathogen interaction [goid GO:0030383] [evidence TAS] [pmid 11274203] --- --- --- --- --- --- S0006255 // MAK3 SGDID:S0006255, Chr XVI from 664957-665487, Verified ORF // sgd // 11 // --- /// M95912 // Saccharomyces cerevisiae N-acetyltransferase (MAK) complete cds; high mobility group non-histone protein (NHP6A), complete cds. // gb // 11 // --- /// GENSCAN00000017224 // cdna:Genscan chromosome:SGD1:XVI:664957:665487:1 // ensembl // 11 // --- /// YPR051W // cdna:known chromosome:SGD1:XVI:664957:665487:1 gene:YPR051W // ensembl // 11 // --- YPR050C // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene 1.32832764023336 -2.26078439363278 1.1720749501848 -1.46257983185113 1.11530022118254 Max fold change below threshold 4 2.26078439363278 Max fold change at or above threshold 0.620331907169597 -1.20366100771809 -0.414115898474885 0.997444999023376 357.376514434814 134.840041798591 0.377305268679556 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772181_at YKL133C.S1 Hypothetical protein 2.26025289371966 455.248962402344 1014.37805175781 --- --- --- --- 1022.85534667969 457.957702636719 452.540222167969 1005.90075683594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL133C /GEN=OCT1 /DB_XREF=GI:6322716 /SEG=NC_001143:-191680,193071 /DEF=Hypothetical ORF /NOTE=Ykl133cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001616 // span:54-73 // numtm:1 S0001616 // YKL133C SGDID:S0001616, Chr XI from 193071-191680, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018317 // cdna:Genscan chromosome:SGD1:XI:191680:193071:-1 // ensembl // 11 // --- /// GENEFINDER00000023156 // cdna:GeneFinder chromosome:SGD1:XI:191680:192663:-1 // ensembl // 11 // --- /// YKL133C // cdna:known chromosome:SGD1:XI:191680:193071:-1 gene:YKL133C // ensembl // 11 // --- --- No cerevisiae_gene -1.51764670723756 -2.23351488748969 1.2323423235378 -2.26025289371966 -1.0168551318095 Max fold change below threshold 4 2.26025289371966 Max fold change at or above threshold 0.892060106000115 -0.857417167595486 -0.874195001704324 0.839552063299694 734.813507080078 322.895102765163 0.439424560999495 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769462_at YIL125W.S1 Component of the mitochondrial alpha-ketoglutarate dehydrogenase complex, which catalyzes a key step in the tricarboxylic acid (TCA) cycle, the oxidative decarboxylation of alpha-ketoglutarate to form succinyl-CoA 2.26012561794373 3963.79663085938 1828.42370605469 KGD1 6099 // tricarboxylic acid cycle // traceable author statement /// 6103 // 2-oxoglutarate metabolism // traceable author statement 5759 // mitochondrial matrix // traceable author statement /// 9353 // oxoglutarate dehydrogenase complex (sensu Eukaryota) // inferred from direct assay /// 42645 // mitochondrial nucleoid // inferred from direct assay 4591 // oxoglutarate dehydrogenase (succinyl-transferring) activity // traceable author statement 1795.98474121094 3868.44213867188 4059.15112304688 1860.86267089844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL125W /GEN=KGD1 /DB_XREF=GI:6322066 /SEG=NC_001141:+122689,125733 /DEF=alpha-ketoglutarate dehydrogenase /NOTE=Kgd1p; go_component: mitochondrial matrix [goid GO:0005759] [evidence TAS]; go_component: mitochondrial nucleoid [goid GO:0042645] [evidence IDA] [pmid 11926067]; go_function: oxoglutarate dehydrogenase (succinyl-transferring) activity [goid GO:0004591] [evidence TAS] [pmid 9175438]; go_process: 2-oxoglutarate metabolism [goid GO:0006103] [evidence TAS] [pmid 9175438]; go_process: tricarboxylic acid cycle [goid GO:0006099] [evidence TAS] [pmid 9175438] --- --- --- --- --- --- S0001387 // KGD1 SGDID:S0001387, Chr IX from 122689-125733, Verified ORF // sgd // 11 // --- /// GENSCAN00000016381 // cdna:Genscan chromosome:SGD1:IX:122689:125733:1 // ensembl // 11 // --- /// GENEFINDER00000019069 // cdna:GeneFinder chromosome:SGD1:IX:122689:125733:1 // ensembl // 11 // --- /// YIL125W // cdna:known chromosome:SGD1:IX:122689:125733:1 gene:YIL125W // ensembl // 11 // --- --- No cerevisiae_gene -1.39024276391775 2.15393931245963 1.20543595410416 2.26012561794373 1.03612387577623 Max fold change below threshold 4 2.26012561794373 Max fold change at or above threshold -0.890358717394301 0.786932311935649 0.941277809747428 -0.837851404288776 2896.11016845703 1235.5979738882 0.426640528853394 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778124_at YHR017W.S1 similar to S. douglasii YSD83 2.25967564426592 815.411743164063 1674.26782226563 YSC83 --- 5739 // mitochondrion // inferred from direct assay --- 1569.36059570313 820.326782226563 810.496704101563 1779.17504882813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR017W /GEN=YSC83 /DB_XREF=GI:6321805 /SEG=NC_001140:+138686,139843 /DEF=similar to S. douglasii YSD83 /NOTE=Ysc83p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001059 // YSC83 SGDID:S0001059, Chr VIII from 138686-139843, Verified ORF // sgd // 11 // --- /// YHR017W // cdna:known chromosome:SGD1:VIII:138686:139843:1 gene:YHR017W // ensembl // 11 // --- --- No cerevisiae_gene -2.25967564426592 -1.91309198932102 1.19891722298701 -1.93629485198557 1.13369422789094 Max fold change below threshold 4 2.25967564426592 Max fold change at or above threshold 0.644887683414965 -0.843592134949783 -0.863126463892957 1.06183091542778 1244.83978271484 503.220671342024 0.404245332073627 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773710_at YJR116W.S1 Hypothetical protein 2.25770773559294 299.747055053711 652.317565917969 --- --- --- --- 609.546569824219 269.984710693359 329.509399414063 695.088562011719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR116W /GEN=RSM7 /DB_XREF=GI:6322576 /SEG=NC_001142:+640740,641579 /DEF=Hypothetical ORF /NOTE=Yjr116wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003877 // span:36-58,136-153,163-182,203-225,240-259 // numtm:5 S0003877 // YJR116W SGDID:S0003877, Chr X from 640740-641579, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024224 // cdna:Genscan chromosome:SGD1:X:640740:641579:1 // ensembl // 11 // --- /// GENEFINDER00000024505 // cdna:GeneFinder chromosome:SGD1:X:640740:641579:1 // ensembl // 11 // --- /// YJR116W // cdna:known chromosome:SGD1:X:640740:641579:1 gene:YJR116W // ensembl // 11 // --- --- No cerevisiae_gene 1.45515550459501 -2.25770773559294 1.02273318279479 -1.84986094754238 1.14033709058878 Max fold change below threshold 4 2.25770773559294 Max fold change at or above threshold 0.642033316376502 -0.99082618202532 -0.704588341250762 1.05338120689958 476.03231048584 207.955344267654 0.436851322246202 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778656_at YLR080W.S1 Integral membrane component of endoplasmic reticulum-derived COPII-coated vesicles, which function in ER to Golgi transport 2.25747864693846 136.472442626953 189.246101379395 EMP46 6888 // ER to Golgi transport // inferred from genetic interaction /// 6888 // ER to Golgi transport // inferred from sequence similarity 139 // Golgi membrane // inferred from direct assay /// 30138 // COPII-coated vesicle // inferred from physical interaction --- 169.249084472656 122.680084228516 150.264801025391 209.243118286133 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR080W /GEN=EMP46 /DB_XREF=GI:6323109 /SEG=NC_001144:+287917,289251 /DEF=Integral membrane component of endoplasmic reticulum-derived COPII-coated vesicles, which function in ER to Golgi transport /NOTE=Emp46p; go_component: Golgi membrane [goid GO:0000139] [evidence IDA] [pmid 12134087]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IGI,ISS] [pmid 12134087] --- --- --- --- --- S0004070 // span:29-46,413-432 // numtm:2 S0004070 // EMP46 SGDID:S0004070, Chr XII from 287917-289251, Verified ORF // sgd // 11 // --- /// GENSCAN00000017879 // cdna:Genscan chromosome:SGD1:XII:287917:289251:1 // ensembl // 11 // --- /// GENEFINDER00000024593 // cdna:GeneFinder chromosome:SGD1:XII:287917:289251:1 // ensembl // 11 // --- /// YLR080W // cdna:known chromosome:SGD1:XII:287917:289251:1 gene:YLR080W // ensembl // 11 // --- --- No cerevisiae_gene -2.25747864693846 -1.37959706774734 1.67210149957969 -1.12633885858644 1.236302807416 Max fold change below threshold 4 2.25747864693846 Max fold change at or above threshold 0.175756695961918 -1.10515939605962 -0.346420590121441 1.27582329021914 162.859272003174 36.3560115562648 0.223235748932712 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772092_at YLR147C.S1 involved in snRNP biogenesis and pre-mRNA splicing; encodes a core snRNP protein 2.25736608281709 341.604064941406 735.856475830078 SMD3 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 243 // commitment complex // inferred from physical interaction /// 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 3729 // mRNA binding // inferred from physical interaction /// 31202 // RNA splicing factor activity, transesterification mechanism // inferred from physical interaction 714.27001953125 316.417449951172 366.790679931641 757.442932128906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR147C /GEN=SMD3 /DB_XREF=GI:6323176 /SEG=NC_001144:-434159,434464 /DEF=involved in snRNP biogenesis and pre-mRNA splicing /NOTE=Smd3p; go_component: commitment complex [goid GO:0000243] [evidence IPI] [pmid 10072386]; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence IDA] [pmid 10377396]; go_function: mRNA binding [goid GO:0003729] [evidence IPI] [pmid 10072386]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10072386] --- --- --- --- --- --- S0004137 // SMD3 SGDID:S0004137, Chr XII from 434464-434159, reverse complement, Verified ORF // sgd // 11 // --- /// YLR147C // cdna:known chromosome:SGD1:XII:434159:434464:-1 gene:YLR147C // ensembl // 11 // --- --- No cerevisiae_gene -1.33293270709286 -2.25736608281709 -1.01599145159347 -1.94735051518858 1.0604434057389 Max fold change below threshold 4 2.25736608281709 Max fold change at or above threshold 0.765788582450676 -0.969835153860694 -0.750082963442389 0.954129534852408 538.730270385742 229.227430609824 0.425495731742886 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772790_at YPL170W.S1 Heme-binding protein involved in regulation of cytochrome P450 protein Erg11p; damage response protein, related to mammalian membrane progesterone receptors; mutations lead to defects in telomeres, mitochondria, and sterol synthesis 2.25719983050301 2986.2451171875 1699.59252929688 DAP1 16125 // sterol metabolism // inferred from mutant phenotype /// 16125 // sterol metabolism // inferred from genetic interaction 16020 // membrane // inferred from sequence similarity 20037 // heme binding // inferred from direct assay 1472.93591308594 3324.71069335938 2647.77954101563 1926.24914550781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL170W /GEN=DAP1 /DB_XREF=GI:6325087 /SEG=NC_001148:+228313,228771 /DEF=damage response protein related to membrane progesterone receptor /NOTE=Dap1p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 12684380]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: sterol metabolism [goid GO:0016125] [evidence IMP] [pmid 12684380] --- --- --- --- --- --- S0006091 // DAP1 SGDID:S0006091, Chr XVI from 228313-228771, Verified ORF // sgd // 11 // --- /// GENSCAN00000017058 // cdna:Genscan chromosome:SGD1:XVI:228313:228771:1 // ensembl // 11 // --- /// YPL170W // cdna:known chromosome:SGD1:XVI:228313:228771:1 gene:YPL170W // ensembl // 11 // --- --- No cerevisiae_gene 1.46146384170579 2.25719983050301 1.52650205435954 1.79762032922959 1.3077616808678 Max fold change below threshold 4 2.25719983050301 Max fold change at or above threshold -1.0688957428281 1.20626869569544 0.374564051292711 -0.511937004160049 2342.91882324219 813.90810656092 0.347390655829302 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770184_at YDL155W.S1 B-type cyclin involved in cell cycle progression; activates Cdc28p to promote the G2/M transition; may be involved in DNA replication and spindle assembly; accumulates during S phase and G2, then targeted for ubiquitin-mediated degradation 2.25658130856024 386.099090576172 734.027709960938 CLB3 79 // regulation of cyclin dependent protein kinase activity // traceable author statement /// 84 // S phase of mitotic cell cycle // inferred from genetic interaction /// 84 // S phase of mitotic cell cycle // inferred from mutant phenotype /// 86 // G2/M transition of mitotic cell cycle // inferred from genetic interaction /// 86 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 16538 // cyclin-dependent protein kinase regulator activity // traceable author statement 769.624450683594 341.057708740234 431.140472412109 698.430969238281 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL155W /GEN=CLB3 /DB_XREF=GI:6320046 /SEG=NC_001136:+176774,178057 /DEF=Involved in mitotic induction and perhaps in DNA replication and spindle assembly /NOTE=Clb3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IGI,IMP] [pmid 1427070]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence IGI,IMP] [pmid 1427070]; go_process: regulation of cyclin dependent protein kinase activity [goid GO:0000079] [evidence TAS] --- --- --- --- --- --- S0002314 // CLB3 SGDID:S0002314, Chr IV from 176774-178057, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023469 // cdna:GeneFinder chromosome:SGD1:IV:176774:178057:1 // ensembl // 11 // --- /// GENSCAN00000024984 // cdna:Genscan chromosome:SGD1:IV:176774:178057:1 // ensembl // 11 // --- /// YDL155W // cdna:known chromosome:SGD1:IV:176774:178057:1 gene:YDL155W // ensembl // 11 // --- --- No cerevisiae_gene -1.27296336393137 -2.25658130856024 -1.13898063100268 -1.78508977915658 -1.10193345453017 Max fold change below threshold 4 2.25658130856024 Max fold change at or above threshold 1.01593877020707 -1.06172579531822 -0.625010232190418 0.670797257301576 560.063400268555 206.273307565895 0.368303494688253 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777798_at SPCC576.04.S1 --- 2.25650676759915 --- --- --- --- 0.47611677646637 1.07436072826386 1.05197632312775 0.232762172818184 0.870360970497131 0.919434010982513 0.904784977436066 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC576.04 /DEF=hypothetical protein --- --- --- --- --- --- SPCC576.04 // |||hypothetical protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.39646905257173 2.25650676759915 -1.17178006941713 2.20949224040219 -2.0455075268535 Max fold change below threshold 0 2.25650676759915 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775151_at YNL081C.S1 Putative mitochondrial ribosomal protein of the small subunit, has similarity to E. coli S13 ribosomal protein 2.25533651521214 1082.92990112305 580.075744628906 SWS2 6412 // protein biosynthesis // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from sequence similarity /// 5763 // mitochondrial small ribosomal subunit // inferred from sequence similarity 3735 // structural constituent of ribosome // inferred from sequence similarity 520.755981445313 991.379821777344 1174.47998046875 639.3955078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL081C /GEN=PMS1 /DB_XREF=GI:6324248 /SEG=NC_001146:-476187,476618 /DEF=Putative mitochondrial ribosomal protein of the small subunit, has similarity to E. coli S13 ribosomal protein /NOTE=Ynl081cp --- --- --- --- --- --- S0005025 // SWS2 SGDID:S0005025, Chr XIV from 476618-476187, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YNL081C // cdna:known chromosome:SGD1:XIV:476187:476618:-1 gene:YNL081C // ensembl // 11 // --- --- No cerevisiae_gene 1.97314319884539 1.90373199175909 1.47367718440059 2.25533651521214 1.22782172571098 Max fold change below threshold 4 2.25533651521214 Max fold change at or above threshold -1.02327405350052 0.526467088045376 1.12940689820769 -0.632599932752548 831.502822875977 303.679000134549 0.365217040495657 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771743_at YJL208C.S1 Major mitochondrial nuclease, has RNAse and DNA endo- and exonucleolytic activities; has a role in mitochondrial recombination 2.25519664304832 230.12158203125 175.210243225098 NUC1 6308 // DNA catabolism // inferred from direct assay /// 6310 // DNA recombination // inferred from mutant phenotype /// 6401 // RNA catabolism // inferred from direct assay 5743 // mitochondrial inner membrane // inferred from direct assay 4520 // endodeoxyribonuclease activity // inferred from direct assay /// 4529 // exodeoxyribonuclease activity // inferred from direct assay /// 4540 // ribonuclease activity // inferred from direct assay 150.72282409668 220.479232788086 239.763931274414 199.697662353516 0.00292969006113708 0.00415039015933871 0.00415039015933871 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL208C /GEN=NUC1 /DB_XREF=GI:6322253 /SEG=NC_001142:-40194,41183 /DEF=Major mitochondrial nuclease, has RNAse and DNA endo- and exonucleolytic activities; has a role in mitochondrial recombination /NOTE=Nuc1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 3286639]; go_function: endodeoxyribonuclease activity [goid GO:0004520] [evidence IDA] [pmid 3286639]; go_function: exodeoxyribonuclease activity [goid GO:0004529] [evidence IDA] [pmid 3286639]; go_function: ribonuclease activity [goid GO:0004540] [evidence IDA] [pmid 3286639]; go_process: DNA catabolism [goid GO:0006308] [evidence IDA] [pmid 3286639]; go_process: DNA recombination [goid GO:0006310] [evidence IMP] [pmid 8087883]; go_process: RNA catabolism [goid GO:0006401] [evidence IDA] [pmid 3286639] --- --- --- --- --- S0003744 // span:5-24 // numtm:1 S0003744 // NUC1 SGDID:S0003744, Chr X from 41183-40194, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000023982 // cdna:Genscan chromosome:SGD1:X:40194:41183:-1 // ensembl // 11 // --- /// YJL208C // cdna:known chromosome:SGD1:X:40194:41183:-1 gene:YJL208C // ensembl // 11 // --- --- No cerevisiae_gene 2.25519664304832 1.46281251104121 1.40165843083424 1.59076060783349 1.32493312509472 Max fold change below threshold 4 2.25519664304832 Max fold change at or above threshold -1.3562468729184 0.46511018975175 0.968638431076842 -0.077501747910187 202.665912628174 38.2991397574409 0.188976721643898 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778452_at YHL004W.S1 Mitochondrial ribosomal protein of the small subunit 2.25476831749516 492.724395751953 752.810089111328 MRP4 6412 // protein biosynthesis // traceable author statement /// 6412 // protein biosynthesis // inferred from direct assay 5763 // mitochondrial small ribosomal subunit // traceable author statement /// 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 49 // tRNA binding // inferred from sequence similarity /// 3735 // structural constituent of ribosome // traceable author statement /// 3735 // structural constituent of ribosome // inferred from direct assay 726.180725097656 322.064453125 663.384338378906 779.439453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL004W /GEN=MRP4 /DB_XREF=GI:6321782 /SEG=NC_001140:+99214,100398 /DEF=Mitochondrial ribosomal protein of the small subunit /NOTE=Mrp4p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 11278769]; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 11278769]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_function: tRNA binding [goid GO:0000049] [evidence ISS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 11278769]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- scop // a.4.5.Histone H1/H5 // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Histone H1/H5 // 1.20000004768372 --- S0000996 // MRP4 SGDID:S0000996, Chr VIII from 99214-100398, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020244 // cdna:GeneFinder chromosome:SGD1:VIII:99214:100398:1 // ensembl // 11 // --- /// GENSCAN00000016551 // cdna:Genscan chromosome:SGD1:VIII:99340:100398:1 // ensembl // 11 // --- /// YHL004W // cdna:known chromosome:SGD1:VIII:99214:100398:1 gene:YHL004W // ensembl // 11 // --- --- No cerevisiae_gene -1.02408263967993 -2.25476831749516 -1.03076373276501 -1.0946606410278 1.07334087257711 Max fold change below threshold 4 2.25476831749516 Max fold change at or above threshold 0.501998431832134 -1.45969678989536 0.197166925873228 0.760531432189996 622.767242431641 206.003597040312 0.33078746440798 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776180_at YKL154W.S1 Signal recognition particle (SRP) receptor beta subunit; involved in SRP-dependent protein targeting; anchors Srp101p to the ER membrane 2.25424709654624 103.463958740234 239.766960144043 SRP102 6614 // SRP-dependent cotranslational protein-membrane targeting // inferred from curator /// 6614 // SRP-dependent cotranslational protein-membrane targeting // traceable author statement /// 45047 // protein-ER targeting // inferred from mutant phenotype 5785 // signal recognition particle receptor complex // traceable author statement /// 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay 3924 // GTPase activity // inferred from sequence similarity /// 5047 // signal recognition particle binding // inferred from sequence similarity /// 5047 // signal recognition particle binding // inferred from physical interaction /// 5047 // signal recognition particle binding // inferred from mutant phenotype /// 5525 // GTP binding // inferred from physical interaction 211.69172668457 113.019966125488 93.9079513549805 267.842193603516 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL154W /GEN=SRP102 /DB_XREF=GI:6322695 /SEG=NC_001143:+161606,162340 /DEF=Signal recognition particle receptor beta subunit /NOTE=Srp102p; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA] [pmid 9679135]; go_function: signal recognition particle binding [goid GO:0005047] [evidence IMP,IPI,ISS] [pmid 9679135]; go_process: protein-ER targeting [goid GO:0045047] [evidence IMP] [pmid 9679135] --- --- --- --- --- S0001637 // span:5-23 // numtm:1 S0001637 // SRP102 SGDID:S0001637, Chr XI from 161606-162340, Verified ORF // sgd // 11 // --- /// GENSCAN00000018303 // cdna:Genscan chromosome:SGD1:XI:161606:162340:1 // ensembl // 11 // --- /// YKL154W // cdna:known chromosome:SGD1:XI:161606:162340:1 gene:YKL154W // ensembl // 11 // --- --- No cerevisiae_gene 1.77116327909993 -1.87304716097264 1.09513286152976 -2.25424709654624 1.26524639294294 Max fold change below threshold 4 2.25424709654624 Max fold change at or above threshold 0.486741360755094 -0.711664336863822 -0.943786954968312 1.16870993107704 171.615459442139 82.3358573437448 0.479769466057368 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772006_at YDR383C.S1 Non-essential kinetochore protein, subunit of the Ctf19 central kinetochore complex (Ctf19p-Mcm21p-Okp1p-Mcm22p-Mcm16p-Ctf3p-Chl4p-Mcm19p-Nkp1p-Nkp2p-Ame1p-Mtw1p) 2.25423000461971 62.6828346252441 134.602661132813 NKP1 --- 776 // kinetochore // inferred from direct assay --- 120.545272827148 71.8905258178711 53.4751434326172 148.660049438477 0.001953125 0.018554700538516 0.0107421996071935 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR383C /GEN=NKP1 /DB_XREF=GI:37362634 /SEG=NC_001136:-1239948,1240664 /DEF=Nkp1p /NOTE=go_component: kinetochore [goid GO:0000776] [evidence IDA] [pmid 12408861]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002791 // NKP1 SGDID:S0002791, Chr IV from 1240666-1239950, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023727 // cdna:GeneFinder chromosome:SGD1:IV:1239950:1240666:-1 // ensembl // 11 // --- /// GENSCAN00000025403 // cdna:Genscan chromosome:SGD1:IV:1239950:1240666:-1 // ensembl // 11 // --- /// YDR383C // cdna:known chromosome:SGD1:IV:1239950:1240666:-1 gene:YDR383C // ensembl // 11 // --- --- No cerevisiae_gene 1.47871261655773 -1.67678941634869 1.1902488020653 -2.25423000461971 1.2332300218163 Max fold change below threshold 4 2.25423000461971 Max fold change at or above threshold 0.500844738303983 -0.611742695831073 -1.03284699286336 1.14374495039045 98.6427478790283 43.7311671123648 0.443328760123299 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1772749_at YPR084W.S1 Hypothetical protein 2.25415205114715 125.300796508789 295.081100463867 --- --- --- --- 271.048645019531 120.244171142578 130.357421875 319.113555908203 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR084W /GEN=MDM36 /DB_XREF=GI:6325341 /SEG=NC_001148:+706968,708338 /DEF=Hypothetical ORF /NOTE=Ypr084wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006288 // YPR084W SGDID:S0006288, Chr XVI from 706970-708340, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017248 // cdna:Genscan chromosome:SGD1:XVI:706970:708340:1 // ensembl // 11 // --- /// GENEFINDER00000020802 // cdna:GeneFinder chromosome:SGD1:XVI:706970:708340:1 // ensembl // 11 // --- /// YPR084W // cdna:known chromosome:SGD1:XVI:706970:708340:1 gene:YPR084W // ensembl // 11 // --- --- No cerevisiae_gene -1.40159525216446 -2.25415205114715 1.33438752079833 -2.07927282636381 1.17732946381344 Max fold change below threshold 4 2.25415205114715 Max fold change at or above threshold 0.608256616449152 -0.898994302516283 -0.797915030341585 1.08865271640872 210.190948486328 100.052666732135 0.476008445904335 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778130_at YER033C.S1 Cytoplasmic protein of unknown function, transcription is induced under conditions of zinc deficiency 2.25403688251807 726.056488037109 358.64436340332 ZRG8 --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 333.79052734375 699.73681640625 752.376159667969 383.498199462891 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER033C /GEN=ZRG8 /DB_XREF=GI:6320871 /SEG=NC_001137:-218056,221286 /DEF=Cytoplasmic protein of unknown function, transcription is induced under conditions of zinc deficiency /NOTE=Zrg8p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000835 // ZRG8 SGDID:S0000835, Chr V from 221286-218056, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016833 // cdna:Genscan chromosome:SGD1:V:218056:219810:-1 // ensembl // 11 // --- /// GENEFINDER00000019601 // cdna:GeneFinder chromosome:SGD1:V:218056:221286:-1 // ensembl // 11 // --- /// YER033C // cdna:known chromosome:SGD1:V:218056:221286:-1 gene:YER033C // ensembl // 11 // --- --- No cerevisiae_gene 1.20391129793169 2.09633515359061 1.15809824927626 2.25403688251807 1.14891876205927 Max fold change below threshold 4 2.25403688251807 Max fold change at or above threshold -0.973783517113798 0.734850152215975 0.980627625349523 -0.741694260451701 542.350425720215 214.174808580265 0.394901153245803 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779145_at SPAC4F10.18.S1 --- 2.25349282129321 --- --- --- --- 1.99068880081177 0.908885419368744 4.48600292205811 1.6739729642868 0.633789002895355 0.398925989866257 0.24609400331974 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F10.18 /DEF=WD repeat protein --- --- --- --- --- --- SPAC4F10.18 // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.04012741279355 -2.19025276276781 1.73015672453882 2.25349282129321 -1.18920009061192 Max fold change below threshold 1 2.25349282129321 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770740_at YIL044C.S1 ADP-ribosylation factor (ARF) GTPase activating protein (GAP) effector, involved in Trans-Golgi-Network (TGN) transport; contains C2C2H2 cysteine/histidine motif 2.25324560257684 444.80989074707 984.822662353516 AGE2 6888 // ER to Golgi transport // inferred from genetic interaction /// 6888 // ER to Golgi transport // inferred from sequence similarity /// 6891 // intra-Golgi transport // inferred from genetic interaction /// 6891 // intra-Golgi transport // inferred from sequence similarity 30136 // clathrin-coated vesicle // inferred from direct assay 8060 // ARF GTPase activator activity // inferred from genetic interaction /// 8060 // ARF GTPase activator activity // inferred from direct assay /// 8060 // ARF GTPase activator activity // inferred from sequence similarity 950.721252441406 421.934143066406 467.685638427734 1018.92407226563 0.014160200022161 0.00195312988944352 0.00195312988944352 0.0107421996071935 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL044C /GEN=AGE2 /DB_XREF=GI:6322145 /SEG=NC_001141:-272949,273845 /DEF=ADP-ribosylation factor (ARF) GTPase activating protein (GAP) effector /NOTE=Age2p; go_component: clathrin-coated vesicle [goid GO:0030136] [evidence IDA] [pmid 14562095]; go_function: ARF GTPase activator activity [goid GO:0008060] [evidence IDA] [pmid 12627398]; go_function: ARF GTPase activator activity [goid GO:0008060] [evidence IGI,ISS] [pmid 9677411]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IGI,ISS] [pmid 9677411]; go_process: intra-Golgi transport [goid GO:0006891] [evidence IGI,ISS] [pmid 9677411] --- --- --- --- --- --- S0001306 // AGE2 SGDID:S0001306, Chr IX from 273845-272949, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016443 // cdna:Genscan chromosome:SGD1:IX:272949:273845:-1 // ensembl // 11 // --- /// GENEFINDER00000019067 // cdna:GeneFinder chromosome:SGD1:IX:272949:273845:-1 // ensembl // 11 // --- /// YIL044C // cdna:known chromosome:SGD1:IX:272949:273845:-1 gene:YIL044C // ensembl // 11 // --- --- No cerevisiae_gene 1.12175551340834 -2.25324560257684 -1.14787544600372 -2.03282113951059 1.07173797750821 Max fold change below threshold 4 2.25324560257684 Max fold change at or above threshold 0.752310070050431 -0.934012423966352 -0.788109140026806 0.969811493942727 714.816276550293 313.574130245657 0.438677937999632 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1777335_at YJR066W.S1 PIK-related protein kinase and rapamycin target; subunit of TORC1, a complex that controls growth in response to nutrients by regulating translation, transcription, ribosome biogenesis, nutrient transport and autophagy; involved in meiosis 2.25320647031698 376.852157592773 805.349578857422 TOR1 74 // regulation of cell cycle // inferred from mutant phenotype /// 80 // G1 phase of mitotic cell cycle // inferred from mutant phenotype /// 7046 // ribosome biogenesis // inferred from mutant phenotype /// 7126 // meiosis // inferred from mutant phenotype /// 7165 // signal transduction // traceable author statement 139 // Golgi membrane // inferred from direct assay /// 5774 // vacuolar membrane // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay /// 10008 // endosome membrane // inferred from direct assay 5515 // protein binding // inferred from physical interaction /// 16303 // phosphatidylinositol 3-kinase activity // traceable author statement 716.790100097656 354.899322509766 398.804992675781 893.909057617188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR066W /GEN=TOR1 /DB_XREF=GI:6322526 /SEG=NC_001142:+559330,566742 /DEF=Involved in cell cycle signaling and meiosis /NOTE=Tor1p; go_component: Golgi membrane [goid GO:0000139] [evidence IDA] [pmid 12719473]; go_component: endosome membrane [goid GO:0010008] [evidence IDA] [pmid 12719473]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 10973982]; go_component: vacuolar membrane [goid GO:0005774] [evidence IDA] [pmid 12719473]; go_function: phosphatidylinositol 3-kinase activity [goid GO:0016303] [evidence TAS] [pmid 8741837]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12631735]; go_process: G1 phase of mitotic cell cycle [goid GO:0000080] [evidence IMP] [pmid 8741837]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 9096347]; go_process: regulation of cell cycle [goid GO:0000074] [evidence IMP] [pmid 8741837]; go_process: ribosome biogenesis [goid GO:0007046] [evidence IMP] [pmid 10198052]; go_process: signal transduction [goid GO:0007165] [evidence TAS] [pmid 8741837] --- --- --- --- --- --- S0003827 // TOR1 SGDID:S0003827, Chr X from 559330-566742, Verified ORF // sgd // 11 // --- /// GENSCAN00000024186 // cdna:Genscan chromosome:SGD1:X:559330:566742:1 // ensembl // 11 // --- /// GENEFINDER00000024507 // cdna:GeneFinder chromosome:SGD1:X:562762:566742:1 // ensembl // 11 // --- /// YJR066W // cdna:known chromosome:SGD1:X:559330:566742:1 gene:YJR066W // ensembl // 11 // --- --- No cerevisiae_gene -2.25320647031698 -2.0196998264992 -1.16723259694811 -1.79734485089656 1.24710017269407 Max fold change below threshold 4 2.25320647031698 Max fold change at or above threshold 0.4864768551291 -0.914211849530082 -0.744276111786409 1.17201110618739 591.100868225098 258.366313931222 0.437093443471027 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777509_at YNL278W.S1 Part of the evolutionarily-conserved CCR4-NOT transcriptional regulatory complex involved in controlling mRNA initiation, elongation, and degradation 2.25267737833084 139.867298126221 269.631858825684 CAF120 6357 // regulation of transcription from RNA polymerase II promoter // inferred from physical interaction 30014 // CCR4-NOT complex // inferred from physical interaction --- 231.727462768555 102.867576599121 176.86701965332 307.536254882813 0.000244141003349796 0.00415039015933871 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL278W /GEN=CAF120 /DB_XREF=GI:6324051 /SEG=NC_001146:+113269,116451 /DEF=CCR4 Associated Factor 120 kDa /NOTE=Caf120p; go_component: CCR4-NOT complex [goid GO:0030014] [evidence IPI] [pmid 11733989]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IPI] [pmid 11733989] --- --- --- --- --- --- S0005222 // CAF120 SGDID:S0005222, Chr XIV from 113269-116451, Verified ORF // sgd // 11 // --- /// GENSCAN00000019819 // cdna:Genscan chromosome:SGD1:XIV:113269:116451:1 // ensembl // 11 // --- /// GENEFINDER00000020688 // cdna:GeneFinder chromosome:SGD1:XIV:113425:116451:1 // ensembl // 11 // --- /// YNL278W // cdna:known chromosome:SGD1:XIV:113269:116451:1 gene:YNL278W // ensembl // 11 // --- --- No cerevisiae_gene 1.0579975321488 -2.25267737833084 1.05720169326805 -1.31017904424899 1.32714634341798 Max fold change below threshold 4 2.25267737833084 Max fold change at or above threshold 0.311858489754585 -1.1777338390911 -0.322316331058758 1.18819168039527 204.749578475952 86.5068137597685 0.422500570715112 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773703_at YIL053W.S1 Constitutively expressed isoform of DL-glycerol-3-phosphatase; involved in glycerol biosynthesis, induced in response to both anaerobic and, along with the Hor2p/Gpp2p isoform, osmotic stress 2.25216654428618 1254.67248535156 2173.21264648438 RHR2 6114 // glycerol biosynthesis // inferred from mutant phenotype /// 6970 // response to osmotic stress // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 121 // glycerol-1-phosphatase activity // inferred from direct assay 2145.2158203125 1157.29089355469 1352.05407714844 2201.20947265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL053W /GEN=RHR2 /DB_XREF=GI:6322136 /SEG=NC_001141:+255050,255865 /DEF=DL-glycerol-3-phosphatase /NOTE=Rhr2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: glycerol-1-phosphatase activity [goid GO:0000121] [evidence IDA] [pmid 8662716]; go_process: glycerol biosynthesis [goid GO:0006114] [evidence IMP] [pmid 11058591]; go_process: response to osmotic stress [goid GO:0006970] [evidence TAS] [pmid 11676566] --- --- --- --- --- --- S0001315 // RHR2 SGDID:S0001315, Chr IX from 255050-255865, Verified ORF // sgd // 11 // --- /// D50471 // Yeast Rhr2 mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000016437 // cdna:Genscan chromosome:SGD1:IX:255113:255865:1 // ensembl // 11 // --- /// GENEFINDER00000019119 // cdna:GeneFinder chromosome:SGD1:IX:255113:255865:1 // ensembl // 11 // --- /// YIL053W // cdna:known chromosome:SGD1:IX:255050:255865:1 gene:YIL053W // ensembl // 11 // --- --- No cerevisiae_gene 2.25216654428618 -1.85365307223955 -1.75776561342077 -1.58663462990836 1.02610164059651 Max fold change below threshold 4 2.25216654428618 Max fold change at or above threshold 0.803514010927456 -1.03710910285414 -0.674241836600588 0.907836928527269 1713.94256591797 536.73395675669 0.313157492806196 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770466_at YGL143C.S1 Mitochondrial polypeptide chain release factor, involved in stop codon recognition and hydrolysis of the peptidyl-tRNA bond during mitochondrial translation; lack of MRF1 causes mitochondrial genome instability 2.25206700202045 181.250709533691 136.910709381104 MRF1 6412 // protein biosynthesis // inferred from mutant phenotype /// 6412 // protein biosynthesis // inferred from sequence similarity /// 6415 // translational termination // inferred from mutant phenotype /// 6415 // translational termination // inferred from sequence similarity 5739 // mitochondrion // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from direct assay 3747 // translation release factor activity // inferred from mutant phenotype /// 3747 // translation release factor activity // inferred from sequence similarity 126.238304138184 141.546081542969 220.955337524414 147.583114624023 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL143C /GEN=MRF1 /DB_XREF=GI:6321295 /SEG=NC_001139:-234720,235961 /DEF=Mitochondrial polypeptide chain release factor /NOTE=Mrf1p; go_component: mitochondrion [goid GO:0005739] [evidence IMP] [pmid 1475194]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 8265342]; go_function: translation release factor activity [goid GO:0003747] [evidence IMP,ISS] [pmid 1475194]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP,ISS] [pmid 1475194]; go_process: translational termination [goid GO:0006415] [evidence IMP,ISS] [pmid 1475194] --- --- --- --- --- --- S0003111 // MRF1 SGDID:S0003111, Chr VII from 235963-234722, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019242 // cdna:Genscan chromosome:SGD1:VII:234722:235963:-1 // ensembl // 11 // --- /// GENEFINDER00000021621 // cdna:GeneFinder chromosome:SGD1:VII:234722:235963:-1 // ensembl // 11 // --- /// YGL143C // cdna:known chromosome:SGD1:VII:234722:235963:-1 gene:YGL143C // ensembl // 11 // --- --- No cerevisiae_gene 1.27170842412147 1.12126095569241 2.25206700202045 1.75030343628944 1.16908346980387 Max fold change below threshold 4 2.25206700202045 Max fold change at or above threshold -0.777948060295429 -0.41534807336573 1.46564316524271 -0.272347031581552 159.080709457397 42.2167069955054 0.265379172242196 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773761_at SPCC4B3.04c.S1 --- 2.25100412539289 --- --- --- --- 10.0892601013184 11.3007688522339 22.7109661102295 5.90761041641235 0.0561522990465164 0.0676269978284836 0.0676269978284836 0.194580003619194 M A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4B3.04c /DEF=cyclic nucleic acid binding family protein --- --- --- --- --- --- SPCC4B3.04c // |nte1||lysophospholipase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.91173775433036 1.1200790482899 -1.0783910608375 2.25100412539289 -1.70784113882809 Max fold change below threshold 4 2.25100412539289 Max fold change at or above threshold MAAMAA No 4 0 MAAA 3 0 1 No No x = 1
1778248_at YIL147C.S1 Histidine kinase osmosensor that regulates a MAP kinase cascade; transmembrane protein with an intracellular kinase domain that signals to Ypd1p and Ssk1p, thereby forming a phosphorelay system similar to bacterial two-component regulators 2.25087761191932 175.841903686523 351.989776611328 SLN1 6468 // protein amino acid phosphorylation // traceable author statement /// 7234 // osmosensory signaling pathway via two-component system // inferred from direct assay /// 42542 // response to hydrogen peroxide // inferred from mutant phenotype 5886 // plasma membrane // inferred from sequence similarity 155 // two-component sensor molecule activity // traceable author statement /// 4673 // protein-histidine kinase activity // inferred from direct assay /// 5034 // osmosensor activity // traceable author statement /// 5034 // osmosensor activity // inferred from direct assay 351.807403564453 156.297882080078 195.385925292969 352.172149658203 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL147C /GEN=SLN1 /DB_XREF=GI:6322044 /SEG=NC_001141:-69791,73453 /DEF=Synthetic lethal of N-end rule /NOTE=Sln1p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 8808622]; go_function: osmosensor activity [goid GO:0005034] [evidence IDA] [pmid 12821642]; go_function: osmosensor activity [goid GO:0005034] [evidence TAS] [pmid 8808622]; go_function: protein-histidine kinase activity [goid GO:0004673] [evidence IDA] [pmid 8808622]; go_function: two-component sensor molecule activity [goid GO:0000155] [evidence TAS] [pmid 8808622]; go_process: osmosensory signaling pathway via two-component system [goid GO:0007234] [evidence IDA] [pmid 8808622]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 8808622]; go_process: response to hydrogen peroxide [goid GO:0042542] [evidence IMP] [pmid 11084293] --- --- --- --- --- S0001409 // span:25-47,334-356 // numtm:2 S0001409 // SLN1 SGDID:S0001409, Chr IX from 73453-69791, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016364 // cdna:Genscan chromosome:SGD1:IX:69791:73453:-1 // ensembl // 11 // --- /// GENEFINDER00000019138 // cdna:GeneFinder chromosome:SGD1:IX:69791:73453:-1 // ensembl // 11 // --- /// YIL147C // cdna:known chromosome:SGD1:IX:69791:73453:-1 gene:YIL147C // ensembl // 11 // --- --- No cerevisiae_gene -1.3117011958438 -2.25087761191932 1.18347375200869 -1.80057700183337 1.00103677776549 Max fold change below threshold 4 2.25087761191932 Max fold change at or above threshold 0.853784694004522 -1.04540824885327 -0.665704307805186 0.857327862653934 263.915840148926 102.943475132223 0.390061752542526 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777104_at YML073C.S1 N-terminally acetylated protein component of the large (60S) ribosomal subunit, has similarity to Rpl6Bp and to rat L6 ribosomal protein; binds to 5.8S rRNA 2.25077583717244 2101.77862548828 4006.40502929688 RPL6A 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3723 // RNA binding // inferred from direct assay /// 3735 // structural constituent of ribosome // traceable author statement 4459.03173828125 1981.10876464844 2222.44848632813 3553.7783203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML073C /GEN=RPL6A /DB_XREF=GI:6323567 /SEG=NC_001145:-123227,124172 /DEF=N-terminally acetylated protein component of the large (60S) ribosomal subunit, has similarity to Rpl6Bp and to rat L6 ribosomal protein; binds to 5.8S rRNA /NOTE=Rpl6ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 6337137]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 3282992] --- --- --- --- --- --- S0004538 // RPL6A SGDID:S0004538, Chr XIII from 124172-124158,123742-123227, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022077 // cdna:GeneFinder chromosome:SGD1:XIII:123227:124285:-1 // ensembl // 9 // --- /// YML073C // cdna:known chromosome:SGD1:XIII:123227:124172:-1 gene:YML073C // ensembl // 11 // --- --- No cerevisiae_gene -1.01735081631175 -2.25077583717244 -1.4816868725268 -2.00635999696369 -1.25472984985995 Max fold change below threshold 4 2.25077583717244 Max fold change at or above threshold 1.20672914558462 -0.92160520496069 -0.714314007749312 0.429190067125379 3054.09182739258 1164.2545603786 0.38121138006927 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778785_at YHL031C.S1 v-SNARE protein involved in Golgi transport, homolog of the mammalian protein GOS-28/GS28 2.25048113105759 595.740966796875 1183.2021484375 GOS1 6891 // intra-Golgi transport // traceable author statement /// 6906 // vesicle fusion // traceable author statement 16021 // integral to membrane // non-traceable author statement /// 16021 // integral to membrane // inferred from sequence similarity 5485 // v-SNARE activity // traceable author statement 1131.75671386719 502.895446777344 688.586486816406 1234.64758300781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL031C /GEN=GOS1 /DB_XREF=GI:6321756 /SEG=NC_001140:-38813,39484 /DEF=SNARE protein with a C-terminal membrane anchorGOlgi Snare /NOTE=Gos1p; go_component: integral to membrane [goid GO:0016021] [evidence ISS,NAS] [pmid 9755865]; go_function: v-SNARE activity [goid GO:0005485] [evidence TAS] [pmid 10047442]; go_process: intra-Golgi transport [goid GO:0006891] [evidence TAS] [pmid 10047442]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 10047442] --- --- --- --- --- S0001023 // span:205-222 // numtm:1 S0001023 // GOS1 SGDID:S0001023, Chr VIII from 39484-38813, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016525 // cdna:Genscan chromosome:SGD1:VIII:38813:39484:-1 // ensembl // 11 // --- /// GENEFINDER00000020130 // cdna:GeneFinder chromosome:SGD1:VIII:38813:39484:-1 // ensembl // 11 // --- /// YHL031C // cdna:known chromosome:SGD1:VIII:38813:39484:-1 gene:YHL031C // ensembl // 11 // --- YHL030W-A // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene -1.13184120128108 -2.25048113105759 1.00498611259567 -1.64359413891452 1.09091253259638 Max fold change below threshold 4 2.25048113105759 Max fold change at or above threshold 0.692107262226491 -1.10428611416647 -0.573844549645635 0.986023401585615 889.471557617188 350.068796374965 0.39356941026059 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775295_at YDR321W.S1 Cytosolic L-asparaginase, involved in asparagine catabolism 2.25043820221721 222.802146911621 470.576156616211 ASP1 6530 // asparagine catabolism // inferred from genetic interaction /// 6530 // asparagine catabolism // inferred from mutant phenotype 5622 // intracellular // inferred from direct assay /// 5829 // cytosol // traceable author statement 4067 // asparaginase activity // inferred from sequence similarity 489.026031494141 217.302581787109 228.301712036133 452.126281738281 0.000732421991415322 0.00292969006113708 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR321W /GEN=ASP1 /DB_XREF=GI:6320527 /SEG=NC_001136:+1108695,1109840 /DEF=Cytosolic L-asparaginase, involved in asparagine catabolism /NOTE=Asp1p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_component: intracellular [goid GO:0005622] [evidence IDA] [pmid 8026756]; go_function: asparaginase activity [goid GO:0004067] [evidence ISS] [pmid 8026756]; go_process: asparagine catabolism [goid GO:0006530] [evidence IGI,IMP] [pmid 323221] --- --- --- --- --- --- S0002729 // ASP1 SGDID:S0002729, Chr IV from 1108697-1109842, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023848 // cdna:GeneFinder chromosome:SGD1:IV:1108697:1109842:1 // ensembl // 11 // --- /// GENSCAN00000025350 // cdna:Genscan chromosome:SGD1:IV:1108697:1109842:1 // ensembl // 11 // --- /// YDR321W // cdna:known chromosome:SGD1:IV:1108697:1109842:1 gene:YDR321W // ensembl // 11 // --- --- No cerevisiae_gene 1.71790840283929 -2.25043820221721 -1.48160097621944 -2.14201648832464 -1.08161381287987 Max fold change below threshold 4 2.25043820221721 Max fold change at or above threshold 0.989044988566811 -0.899058198170098 -0.822629414062923 0.732642623666209 346.689151763916 143.913453256034 0.415108037052266 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773960_at YDL083C.S1 Protein component of the small (40S) ribosomal subunit; identical to Rps16Ap and has similarity to E. coli S9 and rat S16 ribosomal proteins 2.25002740678248 2208.80541992188 3843.45727539063 RPS16B 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 4264.2177734375 1895.18481445313 2522.42602539063 3422.69677734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL083C /GEN=RPS16B /DB_XREF=GI:6320120 /SEG=NC_001136:-306926,307789 /DEF=Protein component of the small (40S) ribosomal subunit; identical to Rps16Ap and has similarity to E. coli S9 and rat S16 ribosomal proteins /NOTE=Rps16bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0002241 // RPS16B SGDID:S0002241, Chr IV from 307789-307766,307333-306926, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023461 // cdna:GeneFinder chromosome:SGD1:IV:306926:307789:-1 // ensembl // 11 // --- /// YDL083C // cdna:known chromosome:SGD1:IV:306926:307789:-1 gene:YDL083C // ensembl // 11 // --- --- No cerevisiae_gene 1.22190195987275 -2.25002740678248 -1.80431457374961 -1.69052242980134 -1.24586489859812 Max fold change below threshold 4 2.25002740678248 Max fold change at or above threshold 1.19450903084542 -1.09114018147965 -0.48597621603962 0.382607366673857 3026.13134765625 1036.48142777539 0.342510389900341 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778920_at YOR032W-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 2.24981908771711 85.6199378967285 42.2476558685303 --- --- --- --- 40.9013633728027 92.0206680297852 79.2192077636719 43.5939483642578 0.00122069998178631 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR032W-A /GEN=HMS1 /DB_XREF=GI:33438881 /SEG=NC_001147:+392175,392375 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Yor032w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028710 // span:12-34,39-61 // numtm:2 S0028710 // YOR032W-A SGDID:S0028710, Chr XV from 392175-392375, Uncharacterized ORF // sgd // 11 // --- /// YOR032W-A // cdna:known chromosome:SGD1:XV:392175:392375:1 gene:YOR032W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.42087709557699 2.24981908771711 -1.40549932956586 1.93683538227355 1.06583117943803 Max fold change below threshold 4 2.24981908771711 Max fold change at or above threshold -0.899558365567373 1.09696528125251 0.596989424643727 -0.794396340328869 63.9337968826294 25.6041568745787 0.400479216361625 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775043_at YPR097W.S1 Hypothetical protein 2.24878141774983 189.029998779297 403.97639465332 --- --- 5739 // mitochondrion // inferred from direct assay --- 374.925933837891 166.724044799805 211.335952758789 433.02685546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR097W /GEN=SYT1 /DB_XREF=GI:6325354 /SEG=NC_001148:+725390,728611 /DEF=Hypothetical ORF /NOTE=Ypr097wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006301 // YPR097W SGDID:S0006301, Chr XVI from 725392-728613, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017256 // cdna:Genscan chromosome:SGD1:XVI:725392:728613:1 // ensembl // 11 // --- /// GENEFINDER00000020985 // cdna:GeneFinder chromosome:SGD1:XVI:725938:728613:1 // ensembl // 11 // --- /// YPR097W // cdna:known chromosome:SGD1:XVI:725392:728613:1 gene:YPR097W // ensembl // 11 // --- --- No cerevisiae_gene -1.90684595615018 -2.24878141774983 1.23690201507085 -1.7740754894924 1.15496639839265 Max fold change below threshold 4 2.24878141774983 Max fold change at or above threshold 0.614349001148956 -1.01666551406201 -0.667184201627571 1.06950071454062 296.503196716309 127.65176955593 0.43052409204905 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777495_at YBL069W.S1 Peripheral membrane protein that interacts with the plasma membrane ATPase Pma1p and has a role in its targeting to the plasma membrane, possibly by influencing its incorporation into lipid rafts 2.24828056077733 196.082824707031 403.793731689453 AST1 6612 // protein-membrane targeting // inferred from genetic interaction /// 6612 // protein-membrane targeting // inferred from mutant phenotype 19898 // extrinsic to membrane // traceable author statement --- 393.860015869141 175.182769775391 216.982879638672 413.727447509766 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL069W /GEN=AST1 /DB_XREF=GI:14270687 /SEG=NC_001134:+90739,92028 /DEF=Peripheral membrane protein that interacts with the plasma membrane ATPase Pma1p and has a role in its targeting to the plasma membrane, possibly by influencing its incorporation into lipid rafts /NOTE=Ast1p; go_component: extrinsic to membrane [goid GO:0019898] [evidence TAS] [pmid 11739806]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-membrane targeting [goid GO:0006612] [evidence IGI,IMP] [pmid 7822420] --- --- --- --- --- --- S0000165 // AST1 SGDID:S0000165, Chr II from 90739-92028, Verified ORF // sgd // 11 // --- /// GENSCAN00000021084 // cdna:Genscan chromosome:SGD1:II:90739:92028:1 // ensembl // 11 // --- /// GENEFINDER00000022364 // cdna:GeneFinder chromosome:SGD1:II:90739:92028:1 // ensembl // 11 // --- /// YBL069W // cdna:known chromosome:SGD1:II:90739:92028:1 gene:YBL069W // ensembl // 11 // --- YBL068W-A // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene 1.61803377575013 -2.24828056077733 -1.13503848188794 -1.81516632337543 1.05044287523521 Max fold change below threshold 4 2.24828056077733 Max fold change at or above threshold 0.773647096010198 -1.02762937735255 -0.683315756133691 0.937298037476043 299.938278198242 121.401267005674 0.404754163873125 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778064_at YJR084W.S1 Subunit of the Cop9 signalosome, which is required for deneddylation, or removal of the ubiquitin-like protein Rub1p from Cdc53p (cullin); involved in adaptation to pheromone signaling 2.24815271745589 447.638717651367 853.834259033203 CSN12 754 // adaptation to pheromone during conjugation with cellular fusion // inferred from mutant phenotype 8180 // signalosome complex // inferred from direct assay --- 829.662414550781 369.041839599609 526.235595703125 878.006103515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR084W /GEN=CSN12 /DB_XREF=GI:6322543 /SEG=NC_001142:+583647,584918 /DEF=Subunit of the Cop9 signalosome, which is required for deneddylation, or removal of the ubiquitin-like protein Rub1p from Cdc53p (cullin); involved in adaptation to pheromone signaling /NOTE=Csn12p; go_component: signalosome complex [goid GO:0008180] [evidence IDA] [pmid 12446563]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: adaptation to pheromone during conjugation with cellular fusion [goid GO:0000754] [evidence IMP] [pmid 12446563] --- --- --- --- --- --- S0003844 // CSN12 SGDID:S0003844, Chr X from 583647-584918, Verified ORF // sgd // 11 // --- /// GENSCAN00000024199 // cdna:Genscan chromosome:SGD1:X:583647:584918:1 // ensembl // 11 // --- /// YJR084W // cdna:known chromosome:SGD1:X:583647:584918:1 gene:YJR084W // ensembl // 11 // --- --- No cerevisiae_gene -1.30618700075172 -2.24815271745589 1.02720355024858 -1.5765988111128 1.05826910815409 Max fold change below threshold 4 2.24815271745589 Max fold change at or above threshold 0.733487158740951 -1.1547762357146 -0.510377718521339 0.931666795494988 650.736488342285 243.938730318915 0.37486560948862 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773669_at YOR004W.S1 Protein required for cell viability 2.24815163294389 293.553268432617 713.066253662109 --- 6364 // rRNA processing // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype 5730 // nucleolus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 650.719970703125 297.659881591797 289.446655273438 775.412536621094 0.000244141003349796 0.00195312988944352 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR004W /GEN=YSP3 /DB_XREF=GI:6324577 /SEG=NC_001147:+333592,334356 /DEF=Protein required for cell viability /NOTE=Yor004wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP] [pmid 12837249]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 12089522] --- --- --- --- --- --- S0005530 // YOR004W SGDID:S0005530, Chr XV from 333592-334356, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022852 // cdna:GeneFinder chromosome:SGD1:XV:333592:334356:1 // ensembl // 11 // --- /// YOR004W // cdna:known chromosome:SGD1:XV:333592:334356:1 gene:YOR004W // ensembl // 11 // --- --- No cerevisiae_gene 1.98869022405696 -2.18611916131683 -1.1212750488285 -2.24815163294389 1.19162246670136 Max fold change below threshold 4 2.24815163294389 Max fold change at or above threshold 0.595547806495014 -0.83084024438832 -0.864022267055329 1.09931470494864 503.309761047363 247.520363685524 0.491785343424387 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775292_at YNL326C.S1 Palmitoyltransferase for Vac8p, one of three yeast DHHC-cysteine rich domain proteins (Pfa3p, Erf2p, Akr1p) with palmitoyltransferase activity; required for vacuolar integrity under stress conditions 2.24736078838516 158.59513092041 342.336639404297 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 332.939697265625 148.14697265625 169.04328918457 351.733581542969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL326C /GEN=EGT2 /DB_XREF=GI:6324003 /SEG=NC_001146:-27336,28346 /DEF=likely functions in pathway(s) outside Ras; not essential for vegetive growth /NOTE=Ynl326cp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005270 // span:7-29,33-55,152-174,189-211 // numtm:4 S0005270 // YNL326C SGDID:S0005270, Chr XIV from 28346-27336, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YNL326C // cdna:known chromosome:SGD1:XIV:27336:28346:-1 gene:YNL326C // ensembl // 11 // --- --- No cerevisiae_gene -1.02829579581136 -2.24736078838516 1.23492891874511 -1.96955288122739 1.05644831310803 Max fold change below threshold 4 2.24736078838516 Max fold change at or above threshold 0.772936806647524 -0.958923220295499 -0.763084908033769 0.949071321681744 250.465885162354 106.701882215943 0.42601363513749 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774413_at SPAC22H10.09.S1 --- 2.24722309834203 --- --- --- --- 0.443895220756531 0.399871438741684 0.434169977903366 0.225113362073898 0.888427972793579 0.805419981479645 0.567627012729645 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22H10.09 /DEF=sequence orphan --- --- --- --- --- --- SPAC22H10.09 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.24722309834203 -1.11009483986498 -1.6132538807542 -1.02239962076634 -1.97187415561237 Max fold change below threshold 0 2.24722309834203 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780206_at YBR024W.S1 Protein anchored to the mitochondrial inner membrane, similar to Sco1p and may have a redundant function with Sco1p in delivery of copper to cytochrome c oxidase; interacts with Cox2p 2.24598966636801 528.613372802734 1032.04229736328 SCO2 6825 // copper ion transport // inferred from sequence similarity 5740 // mitochondrial membrane // inferred from direct assay 8379 // thioredoxin peroxidase activity // inferred from sequence similarity 1025.9404296875 529.172485351563 528.054260253906 1038.14416503906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR024W /GEN=SCO2 /DB_XREF=GI:6319498 /SEG=NC_001134:+289407,290312 /DEF=Originally identified as a multicopy suppressor of a respiratory defective mutant; homolog of Sco1p /NOTE=Sco2p; go_component: mitochondrial membrane [goid GO:0005740] [evidence IDA] [pmid 8662933]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: copper ion transport [goid GO:0006825] [evidence ISS] [pmid 8662933] --- --- --- --- --- --- S0000228 // SCO2 SGDID:S0000228, Chr II from 289445-290350, Verified ORF // sgd // 11 // --- /// GENSCAN00000021158 // cdna:Genscan chromosome:SGD1:II:289445:290350:1 // ensembl // 11 // --- /// YBR024W // cdna:known chromosome:SGD1:II:289445:290350:1 gene:YBR024W // ensembl // 11 // --- --- No cerevisiae_gene -2.24598966636801 -1.93876374544664 1.24945315035843 -1.94286933542434 1.01189516954243 Max fold change below threshold 4 2.24598966636801 Max fold change at or above threshold 0.844906726977152 -0.863973791108334 -0.867820482719592 0.886887546850774 780.327835083008 290.697880324882 0.372533014017063 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775756_at YCL010C.S1 SaGa associated Factor 29kDa; Probable 29kKDa Subunit of SAGA histone acetyltransferase complex 2.2452172309298 167.918785095215 271.56714630127 SGF29 16573 // histone acetylation // inferred from physical interaction 124 // SAGA complex // inferred from direct assay --- 251.34748840332 135.306732177734 200.530838012695 291.786804199219 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL010C /GEN=SGF29 /DB_XREF=GI:6319836 /SEG=NC_001135:-103570,104349 /DEF=SaGa associated Factor 29kDa /NOTE=Sgf29p; go_component: SAGA complex [goid GO:0000124] [evidence IDA] [pmid 12052880]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: histone acetylation [goid GO:0016573] [evidence IPI] [pmid 12052880] --- --- --- --- --- --- S0000516 // SGF29 SGDID:S0000516, Chr III from 104349-103570, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022457 // cdna:Genscan chromosome:SGD1:III:103570:104349:-1 // ensembl // 11 // --- /// GENEFINDER00000023309 // cdna:GeneFinder chromosome:SGD1:III:103570:104349:-1 // ensembl // 11 // --- /// YCL010C // cdna:known chromosome:SGD1:III:103570:104349:-1 gene:YCL010C // ensembl // 11 // --- --- No cerevisiae_gene 2.2452172309298 -1.85761258407423 1.68953144334531 -1.25341065191882 1.16089007315246 Max fold change below threshold 4 2.2452172309298 Max fold change at or above threshold 0.467890177237985 -1.25003894651035 -0.284426564887341 1.06657533415971 219.742965698242 67.5468822441275 0.30739041875354 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778237_at YOR298W.S1 Protein of unknown function involved in the organization of the outer spore wall layers; has similarity to the tafazzins superfamily of acetyltransferases 2.24413818188406 448.347640991211 704.477020263672 MUM3 8654 // phospholipid biosynthesis // inferred from sequence similarity /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype --- 8415 // acyltransferase activity // inferred from sequence similarity 672.9345703125 596.83203125 299.863250732422 736.019470214844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR298W /GEN=TIM18 /DB_XREF=GI:6324872 /SEG=NC_001147:+875596,877035 /DEF=Hypothetical ORF /NOTE=Yor298wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: acyltransferase activity [goid GO:0008415] [evidence ISS] [pmid 9259571]; go_process: phospholipid biosynthesis [goid GO:0008654] [evidence ISS] [pmid 9259571] --- --- --- --- scop // a.4.5.DNA-binding protein Mj223 // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; DNA-binding protein Mj223 // 8.60000038146973 --- S0005824 // YOR298W SGDID:S0005824, Chr XV from 875596-877035, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022819 // cdna:GeneFinder chromosome:SGD1:XV:875953:877035:1 // ensembl // 11 // --- /// GENSCAN00000017749 // cdna:Genscan chromosome:SGD1:XV:876214:877035:1 // ensembl // 11 // --- /// YOR298W // cdna:known chromosome:SGD1:XV:875596:877035:1 gene:YOR298W // ensembl // 11 // --- --- No cerevisiae_gene 1.2558250252146 -1.12751081556918 -1.8588190031357 -2.24413818188406 1.09374596385061 Max fold change below threshold 4 2.24413818188406 Max fold change at or above threshold 0.500248787976252 0.105829812078574 -1.4332794440414 0.82720084398657 576.412330627441 192.948472849955 0.334740363100708 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779321_at YDR348C.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and bud neck; potential Cdc28p substrate 2.24393619218289 393.552627563477 714.009643554688 --- --- 5935 // bud neck // inferred from direct assay --- 715.237609863281 318.742401123047 468.362854003906 712.781677246094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR348C /GEN=MRP1 /DB_XREF=GI:6320555 /SEG=NC_001136:-1170316,1171815 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and bud neck; potential Cdc28p substrate /NOTE=Ydr348cp; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002756 // YDR348C SGDID:S0002756, Chr IV from 1171817-1170318, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023931 // cdna:GeneFinder chromosome:SGD1:IV:1170099:1171664:-1 // ensembl // 11 // --- /// GENSCAN00000025374 // cdna:Genscan chromosome:SGD1:IV:1170318:1171817:-1 // ensembl // 11 // --- /// YDR348C // cdna:known chromosome:SGD1:IV:1170318:1171817:-1 gene:YDR348C // ensembl // 11 // --- --- No cerevisiae_gene -1.21215816531986 -2.24393619218289 1.1026325744533 -1.52710148498949 -1.00344556081559 Max fold change below threshold 4 2.24393619218289 Max fold change at or above threshold 0.828658288957874 -1.20631146168614 -0.438400301655745 0.816053474384009 553.781135559082 194.840836633937 0.351837258662182 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770554_at YML117W.S1 Putative RNA-binding protein, based on computational analysis of large-scale protein-protein interaction data 2.24368693362549 1665.85363769531 2045.35772705078 NAB6 --- 5737 // cytoplasm // inferred from direct assay 3723 // RNA binding // RCA 2012.96350097656 1495.92370605469 1835.78356933594 2077.751953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML117W /GEN=NAB6 /DB_XREF=GI:6323518 /SEG=NC_001145:+34243,37647 /DEF=Hypothetical ORF /NOTE=Nab6p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: RNA binding [goid GO:0003723] [evidence TAS] [pmid 14566057]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.140.1.LEM domain // All alpha proteins; LEM/SAP HeH motif; LEM domain; LEM domain // 4.69999980926514 --- S0004585 // NAB6 SGDID:S0004585, Chr XIII from 34243-37647, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018618 // cdna:Genscan chromosome:SGD1:XIII:34243:37647:1 // ensembl // 11 // --- /// GENEFINDER00000022082 // cdna:GeneFinder chromosome:SGD1:XIII:34243:38908:1 // ensembl // 9 // --- /// YML117W // cdna:known chromosome:SGD1:XIII:34243:37647:1 gene:YML117W // ensembl // 11 // --- YML116W-A // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene -2.24368693362549 -1.34563246295862 -1.08930028585038 -1.09651460803994 1.03218560700033 Max fold change below threshold 4 2.24368693362549 Max fold change at or above threshold 0.603625406878993 -1.37974192340106 -0.0760377282388129 0.852154244760882 1855.60568237305 260.687865040546 0.140486671019009 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778148_at SPAC14C4.05c.S1 --- 2.243162306089 --- --- --- --- 2.65505337715149 1.2839183807373 1.67216420173645 3.04340529441834 0.398925989866257 0.689208984375 0.753906011581421 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC14C4.05c /DEF=hypothetical protein --- --- --- --- --- --- SPAC14C4.05c // |||chromosome segregation protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.43646838332375 -2.06793003121179 2.243162306089 -1.58779465222038 1.14626896792693 Max fold change below threshold 2 2.243162306089 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777092_at YGR276C.S1 3' exoribonuclease, required for 5S and tRNA-Arg3 maturation 2.2430122255209 420.587265014648 645.816558837891 RNH70 6260 // DNA replication // traceable author statement /// 6396 // RNA processing // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 8408 // 3'-5' exonuclease activity // inferred from mutant phenotype /// 8408 // 3'-5' exonuclease activity // inferred from sequence similarity 565.907165527344 343.704559326172 497.469970703125 725.725952148438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR276C /GEN=RNH70 /DB_XREF=GI:6321715 /SEG=NC_001139:-1043824,1045485 /DEF=3' exoribonuclease, required for 5S and tRNA-Arg3 maturation /NOTE=Rnh70p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10359084]; go_function: 3'-5' exonuclease activity [goid GO:0008408] [evidence IMP,ISS] [pmid 10716935]; go_process: DNA replication [goid GO:0006260] [evidence TAS] [pmid 9759502]; go_process: RNA processing [goid GO:0006396] [evidence IMP] [pmid 10716935] --- --- --- --- --- --- S0003508 // RNH70 SGDID:S0003508, Chr VII from 1045486-1043825, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019553 // cdna:Genscan chromosome:SGD1:VII:1043825:1045270:-1 // ensembl // 11 // --- /// GENEFINDER00000021643 // cdna:GeneFinder chromosome:SGD1:VII:1043825:1045057:-1 // ensembl // 11 // --- /// YGR276C // cdna:known chromosome:SGD1:VII:1043825:1045486:-1 gene:YGR276C // ensembl // 11 // --- --- No cerevisiae_gene -2.2430122255209 -1.64649304227095 1.19481508652613 -1.13757050446179 1.28241166812611 Max fold change below threshold 4 2.2430122255209 Max fold change at or above threshold 0.206404734280837 -1.19592867823109 -0.225506333736528 1.21503027768678 533.20191192627 158.452051572495 0.297170824088127 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776045_at YCR033W.S1 Subunit of the Set3C deacetylase complex; putative DNA-binding protein 2.24277651291195 1230.70263671875 1153.08258056641 SNT1 16575 // histone deacetylation // inferred from direct assay /// 16575 // histone deacetylation // inferred from physical interaction /// 45835 // negative regulation of meiosis // inferred from physical interaction 118 // histone deacetylase complex // inferred from physical interaction 17136 // NAD-dependent histone deacetylase activity // inferred from direct assay /// 17136 // NAD-dependent histone deacetylase activity // inferred from physical interaction /// 45129 // NAD-independent histone deacetylase activity // inferred from direct assay /// 45129 // NAD-independent histone deacetylase activity // inferred from physical interaction 1187.03149414063 1164.03259277344 1297.37268066406 1119.13366699219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR033W /GEN=SNT1 /DB_XREF=GI:10383795 /SEG=NC_001135:+186484,190164 /DEF=Snt1p /NOTE=go_component: histone deacetylase complex [goid GO:0000118] [evidence IPI] [pmid 11711434]; go_function: NAD-dependent histone deacetylase activity [goid GO:0017136] [evidence IDA,IPI] [pmid 11711434]; go_function: NAD-independent histone deacetylase activity [goid GO:0045129] [evidence IDA,IPI] [pmid 11711434]; go_process: histone deacetylation [goid GO:0016575] [evidence IDA,IPI] [pmid 11711434]; go_process: negative regulation of meiosis [goid GO:0045835] [evidence IPI] [pmid 11711434] --- --- --- --- scop // a.4.1.Myb // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb // 0.779999971389771 --- S0000629 // SNT1 SGDID:S0000629, Chr III from 186484-190164, Verified ORF // sgd // 11 // --- /// GENSCAN00000022483 // cdna:Genscan chromosome:SGD1:III:186484:190164:1 // ensembl // 11 // --- /// GENEFINDER00000023373 // cdna:GeneFinder chromosome:SGD1:III:187201:190164:1 // ensembl // 11 // --- /// YCR033W // cdna:known chromosome:SGD1:III:186484:190164:1 gene:YCR033W // ensembl // 11 // --- --- No cerevisiae_gene -2.24277651291195 -1.01975795309338 -1.03012678696053 1.09295556779083 -1.060669988895 Max fold change below threshold 4 2.24277651291195 Max fold change at or above threshold -0.0641628186722778 -0.367729899326632 1.39225248282756 -0.960359764828652 1191.89260864258 75.7621719641413 0.0635645958493066 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777601_at YPL249C.S1 GTPase-activating protein (GAP) for yeast Rab family members, involved in ER to Golgi trafficking; exhibits GAP activity toward Ypt1p that is stimulated by Gyl1p, also acts on Sec4p; interacts with Gyl1p, Rvs161p and Rvs167p 2.24242216152128 484.083862304688 744.890594482422 GYP5 6888 // ER to Golgi transport // inferred from genetic interaction /// 6888 // ER to Golgi transport // inferred from physical interaction /// 16192 // vesicle-mediated transport // inferred from genetic interaction 131 // incipient bud site // inferred from direct assay /// 5625 // soluble fraction // inferred from direct assay /// 5798 // Golgi vesicle // inferred from direct assay /// 5829 // cytosol // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 5097 // Rab GTPase activator activity // inferred from genetic interaction /// 5097 // Rab GTPase activator activity // inferred from sequence similarity /// 5097 // Rab GTPase activator activity // inferred from physical interaction 731.472045898438 395.062683105469 573.105041503906 758.309143066406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL249C /GEN=GYP5 /DB_XREF=GI:6325007 /SEG=NC_001148:-76669,79353 /DEF=GTPase-activating protein (GAP) for yeast Rab family members; Ypt1p is the preferred in vitro substrate but also acts on Sec4p; involved in ER to Golgi trafficking; interacts with the yeast amphiphysins, Rvs161p and Rvs167p /NOTE=Gyp5p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 12189143]; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 12189143]; go_function: Rab GTPase activator activity [goid GO:0005097] [evidence IGI,IPI,ISS] [pmid 12189143]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IGI] [pmid 12189143] --- --- --- --- --- --- S0006170 // GYP5 SGDID:S0006170, Chr XVI from 79353-76669, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016995 // cdna:Genscan chromosome:SGD1:XVI:76669:79353:-1 // ensembl // 11 // --- /// GENEFINDER00000020975 // cdna:GeneFinder chromosome:SGD1:XVI:76669:79353:-1 // ensembl // 11 // --- /// YPL249C // cdna:known chromosome:SGD1:XVI:76669:79353:-1 gene:YPL249C // ensembl // 11 // --- --- No cerevisiae_gene -2.24242216152128 -1.85153414174317 1.09495947995225 -1.27633154993534 1.03668916306297 Max fold change below threshold 4 2.24242216152128 Max fold change at or above threshold 0.698163638225996 -1.30952239890463 -0.246968271377772 0.85832703205641 614.487228393555 167.560742352805 0.272683848598214 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772207_at YBL037W.S1 Alpha-adaptin, large subunit of the clathrin associated protein complex (AP-2); involved in vesicle mediated transport 2.24174331345217 267.28052520752 538.156616210938 APL3 16192 // vesicle-mediated transport // inferred from sequence similarity /// 16192 // vesicle-mediated transport // traceable author statement 30122 // AP-2 adaptor complex // inferred from sequence similarity --- 563.929077148438 251.55827331543 283.002777099609 512.384155273438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL037W /GEN=APL3 /DB_XREF=GI:6319434 /SEG=NC_001134:+147174,150251 /DEF=clathrin Associated Protein complex Large subunit /NOTE=Apl3p; go_component: AP-2 adaptor complex [goid GO:0030122] [evidence ISS] [pmid 10564262]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence ISS] [pmid 10564262] --- --- --- --- scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 4.30000019073486 --- S0000133 // APL3 SGDID:S0000133, Chr II from 147212-150289, Verified ORF // sgd // 11 // --- /// GENSCAN00000021108 // cdna:Genscan chromosome:SGD1:II:147212:150289:1 // ensembl // 11 // --- /// GENEFINDER00000022244 // cdna:GeneFinder chromosome:SGD1:II:147212:150289:1 // ensembl // 11 // --- /// YBL037W // cdna:known chromosome:SGD1:II:147212:150289:1 gene:YBL037W // ensembl // 11 // --- --- No cerevisiae_gene -1.19737806817621 -2.24174331345217 -1.14503713582272 -1.99266269726374 -1.10059819638157 Max fold change below threshold 4 2.24174331345217 Max fold change at or above threshold 1.01825054704163 -0.954770622039159 -0.756158361046309 0.692678436043836 402.718570709229 158.321060477287 0.393130766724931 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775629_at YPL109C.S1 Hypothetical protein 2.24147976669738 742.173950195313 400.661315917969 --- --- 5739 // mitochondrion // inferred from direct assay --- 355.381256103516 692.537536621094 791.810363769531 445.941375732422 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL109C /GEN=CAR1 /DB_XREF=GI:37362702 /SEG=NC_001148:-345263,347187 /DEF=Hypothetical ORF /NOTE=Ypl109cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006030 // YPL109C SGDID:S0006030, Chr XVI from 347388-345596,345443-345263, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YPL109C // cdna:known chromosome:SGD1:XVI:345263:347388:-1 gene:YPL109C // ensembl // 11 // --- GENSCAN00000017106 // ensembl // 8 // Cross Hyb Matching Probes /// GENEFINDER00000020834 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.5762556214799 1.9487171164125 2.24147976669738 2.22805888090759 1.25482525618213 Max fold change below threshold 4 2.24147976669738 Max fold change at or above threshold -1.0555789552167 0.591805986860508 1.07686460819396 -0.613091639837764 571.417633056641 204.661504367312 0.358164488681477 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777186_at YBR170C.S1 Endoplasmic reticulum and nuclear membrane protein, forms a complex with Cdc48p and Ufd1p that recognizes ubiquitinated proteins in the endoplasmic reticulum and delivers them to the proteasome for degradation 2.24069597453995 968.726043701172 1360.51580810547 NPL4 30433 // ER-associated protein catabolism // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay /// 42175 // nuclear envelope-endoplasmic reticulum network // inferred from direct assay --- 1316.25708007813 894.527160644531 1042.92492675781 1404.77453613281 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR170C /GEN=NPL4 /DB_XREF=GI:6319647 /SEG=NC_001134:-576301,578043 /DEF=Endoplasmic reticulum and nuclear membrane protein, forms a complex with Cdc48p and Ufd1p that recognizes ubiquitinated proteins in the endoplasmic reticulum and delivers them to the proteasome for degradation /NOTE=Npl4p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11740563]; go_component: nuclear envelope-endoplasmic reticulum network [goid GO:0042175] [evidence IDA] [pmid 11598205]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER-associated protein catabolism [goid GO:0030433] [evidence IMP] [pmid 11739805] --- --- --- --- --- --- S0000374 // NPL4 SGDID:S0000374, Chr II from 578081-576339, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021277 // cdna:Genscan chromosome:SGD1:II:576339:578081:-1 // ensembl // 11 // --- /// GENEFINDER00000022202 // cdna:GeneFinder chromosome:SGD1:II:576339:578081:-1 // ensembl // 11 // --- /// YBR170C // cdna:known chromosome:SGD1:II:576339:578081:-1 gene:YBR170C // ensembl // 11 // --- --- No cerevisiae_gene -2.24069597453995 -1.47145568965142 1.07244626570259 -1.26208229020859 1.06724936746356 Max fold change below threshold 4 2.24069597453995 Max fold change at or above threshold 0.639965337121421 -1.13990392646713 -0.513605884713367 1.01354447405908 1164.62092590332 236.944323979901 0.203451886111456 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774765_at YGL100W.S1 Nuclear pore protein that is part of the evolutionarily conserved Nup84p complex (Nup84p, Nup85p, Nup120p, Nup145p, and Seh1p); homologous to Sec13p 2.24037892274765 462.491073608398 818.544555664063 SEH1 6406 // mRNA-nucleus export // traceable author statement /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6999 // nuclear pore organization and biogenesis // traceable author statement 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement 787.721618652344 351.601959228516 573.380187988281 849.367492675781 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL100W /GEN=SEH1 /DB_XREF=GI:6321338 /SEG=NC_001139:+313235,314284 /DEF=Nuclear pore protein, homologous to sec13 /NOTE=Seh1p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence TAS] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0003068 // SEH1 SGDID:S0003068, Chr VII from 313237-314286, Verified ORF // sgd // 11 // --- /// GENSCAN00000019276 // cdna:Genscan chromosome:SGD1:VII:313237:314286:1 // ensembl // 11 // --- /// GENEFINDER00000021572 // cdna:GeneFinder chromosome:SGD1:VII:313237:314286:1 // ensembl // 11 // --- /// YGL100W // cdna:known chromosome:SGD1:VII:313237:314286:1 gene:YGL100W // ensembl // 11 // --- --- No cerevisiae_gene -1.18351423469106 -2.24037892274765 1.12601829330799 -1.37382078270978 1.07825845141702 Max fold change below threshold 4 2.24037892274765 Max fold change at or above threshold 0.651261432180671 -1.27822616426363 -0.297031365297927 0.923996097380889 640.51781463623 226.02874474421 0.352884400057754 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769614_at YNL291C.S1 N-glycosylated integral membrane protein of the ER membrane and plasma membrane, required for Ca2+ influx stimulated by pheromone, functions as a stretch-activated Ca2+-permeable cation channel in mammals; forms an oligomer 2.2401865123577 100.272300720215 186.74976348877 MID1 6816 // calcium ion transport // inferred from direct assay 5783 // endoplasmic reticulum // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 5262 // calcium channel activity // inferred from mutant phenotype /// 15275 // stretch-activated, cation-selective, calcium channel activity // inferred from direct assay 177.334197998047 79.1604614257813 121.384140014648 196.165328979492 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL291C /GEN=MID1 /DB_XREF=GI:6324038 /SEG=NC_001146:-84167,85813 /DEF=N-glycosylated integral plasma membrane protein /NOTE=Mid1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 10958666]; go_function: calcium channel activity [goid GO:0005262] [evidence IDA] [pmid 10958666]; go_process: calcium ion transport [goid GO:0006816] [evidence IDA] [pmid 10958666] --- --- --- --- --- --- S0005235 // MID1 SGDID:S0005235, Chr XIV from 85813-84167, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019807 // cdna:Genscan chromosome:SGD1:XIV:84167:85672:-1 // ensembl // 11 // --- /// GENEFINDER00000020527 // cdna:GeneFinder chromosome:SGD1:XIV:84167:85489:-1 // ensembl // 11 // --- /// YNL291C // cdna:known chromosome:SGD1:XIV:84167:85813:-1 gene:YNL291C // ensembl // 11 // --- --- No cerevisiae_gene -1.04456952598343 -2.2401865123577 -1.14169774010772 -1.46093384174116 1.10619007046601 Max fold change below threshold 4 2.2401865123577 Max fold change at or above threshold 0.633674278646775 -1.20560273936719 -0.414545534497072 0.986473995217488 143.511032104492 53.3762644836789 0.371931437611117 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769833_at YHL020C.S1 Transcriptional regulator of a variety of genes; phosphorylation by protein kinase A stimulates Opi1p function in negative regulation of phospholipid biosynthetic genes 2.23975577493521 2319.3583984375 1011.3586730957 OPI1 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 8654 // phospholipid biosynthesis // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 5634 // nucleus // inferred from curator 3714 // transcription corepressor activity // inferred from physical interaction 1049.91687011719 2287.15942382813 2351.55737304688 972.800476074219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL020C /GEN=OPI1 /DB_XREF=GI:6321767 /SEG=NC_001140:-66238,67452 /DEF=Transcriptional regulator of a variety of genes; phosphorylation by protein kinase A stimulates Opi1p function in negative regulation of phospholipid biosynthetic genes /NOTE=Opi1p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 11454208]; go_function: transcription corepressor activity [goid GO:0003714] [evidence IPI] [pmid 11454208]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IMP] [pmid 1985968]; go_process: phospholipid biosynthesis [goid GO:0008654] [evidence IMP] [pmid 1985968]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IMP] [pmid 12871953] --- --- --- --- --- --- S0001012 // OPI1 SGDID:S0001012, Chr VIII from 67452-66238, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016537 // cdna:Genscan chromosome:SGD1:VIII:66238:67452:-1 // ensembl // 11 // --- /// GENEFINDER00000020248 // cdna:GeneFinder chromosome:SGD1:VIII:66238:67326:-1 // ensembl // 11 // --- /// YHL020C // cdna:known chromosome:SGD1:VIII:66238:67452:-1 gene:YHL020C // ensembl // 11 // --- --- No cerevisiae_gene -1.5395193561344 2.17841953865628 1.23520498216528 2.23975577493521 -1.07927257021314 Max fold change below threshold 4 2.23975577493521 Max fold change at or above threshold -0.813767295084335 0.822175772296682 0.907325913844903 -0.91573439105725 1665.3585357666 756.287048357765 0.454128664858123 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-18srRnac_at AFFX-18srRnac --- 2.23963024329157 241.971725463867 238.228149414063 --- --- --- --- 327.037139892578 337.920623779297 146.022827148438 149.419158935547 2.97848891932517E-5 2.97848891932517E-5 2.97848891932517E-5 2.97848891932517E-5 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /GEN=18S rRNA /DB_XREF=gb:Z75578.1 /NOTE=SIF corresponding to nucleotides 704-1051 of gb:Z75578.1 /DEF=S.cerevisiae 18S rRNA gene. --- --- --- --- --- --- D83552 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:465250-465418(-) /// L10741 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 18S ribosomal RNA, partial. // gb // 0 // chr12:465251-465539(-) /// D23705 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:465250-465418(-) /// L22158 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA (18S rRNA) fragment. // gb // 0 // chr12:465277-465545(-) /// L19742 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA fragment. // gb // 0 // chr12:465277-465547(-) /// D83552 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:456113-456281(-) /// L10741 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 18S ribosomal RNA, partial. // gb // 0 // chr12:456114-456402(-) /// D23705 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:456113-456281(-) /// L22158 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA (18S rRNA) fragment. // gb // 0 // chr12:456140-456408(-) /// L19742 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA fragment. // gb // 0 // chr12:456140-456410(-) --- AFFX_control cerevisiae_gene -1.30163782816809 1.03327904558575 -1.06995600405164 -2.23963024329157 -2.18872293367444 Max fold change below threshold 4 2.23963024329157 Max fold change at or above threshold 0.814235906895344 0.916168372198809 -0.881106811049878 -0.849297468044275 240.099937438965 106.771516359555 0.444696144024182 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 No No 3 < x
1770455_at YER069W.S1 Protein that is processed in the mitochondrion to yield acetylglutamate kinase and N-acetyl-gamma-glutamyl-phosphate reductase, which catalyze the 2nd and 3rd steps in arginine biosynthesis; enzymes form a complex with Arg2p 2.23940241781867 850.296722412109 1222.17858886719 ARG5,6 6526 // arginine biosynthesis // traceable author statement /// 6592 // ornithine biosynthesis // traceable author statement /// 45449 // regulation of transcription // inferred from mutant phenotype 5759 // mitochondrial matrix // inferred from direct assay 3942 // N-acetyl-gamma-glutamyl-phosphate reductase activity // inferred from direct assay /// 3991 // acetylglutamate kinase activity // inferred from direct assay 1156.14001464844 666.683288574219 1033.91015625 1288.21716308594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER069W /GEN=ARG5,6 /DB_XREF=GI:6320913 /SEG=NC_001137:+295408,297999 /DEF=Bifunctional enzyme with N-acetyl-gamma-glutamyl-phosphate reductase and acetylglutamate kinase activities, catalyzes the second and third steps in the biosynthesis of the arginine precursor ornithine; forms a complex with Arg2p /NOTE=Arg5,6p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 1851947]; go_function: N-acetyl-gamma-glutamyl-phosphate reductase activity [goid GO:0003942] [evidence IDA] [pmid 1851947]; go_function: acetylglutamate kinase activity [goid GO:0003991] [evidence IDA] [pmid 1851947]; go_process: arginine biosynthesis [goid GO:0006526] [evidence TAS] [pmid 12603335]; go_process: ornithine biosynthesis [goid GO:0006592] [evidence TAS] [pmid 1851947] --- --- --- --- --- --- S0000871 // ARG5,6 SGDID:S0000871, Chr V from 295408-297999, Verified ORF // sgd // 10 // --- /// GENSCAN00000016863 // cdna:Genscan chromosome:SGD1:V:295408:297999:1 // ensembl // 10 // --- /// GENEFINDER00000019656 // cdna:GeneFinder chromosome:SGD1:V:295408:297999:1 // ensembl // 10 // --- /// YER069W // cdna:known chromosome:SGD1:V:295408:297999:1 gene:YER069W // ensembl // 10 // --- --- No cerevisiae_gene 2.23940241781867 -1.73416678423271 -1.04887999923807 -1.11822096693756 1.11423975190208 Max fold change below threshold 4 2.23940241781867 Max fold change at or above threshold 0.448465752710774 -1.38222866308579 -0.008705448119132 0.942468358494153 1036.23765563965 267.361238364431 0.258011506249881 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776134_at YAL032C.S1 Ortholog of human transcriptional coactivator SKIP, can activate transcription of a reporter gene; interacts with splicing factors Prp22p and Prp46p 2.23916187123103 380.73779296875 698.579162597656 PRP45 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from direct assay 16563 // transcriptional activator activity // inferred from direct assay 676.827880859375 302.268402099609 459.207183837891 720.330444335938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL032C /GEN=PRP45 /DB_XREF=GI:6319287 /SEG=NC_001133:-83338,84477 /DEF=Ortholog of human transcriptional coactivator SKIP, can activate transcription of a reporter gene; interacts with splicing factors Prp22p and Prp46p /NOTE=Prp45p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12359070]; go_function: transcriptional activator activity [goid GO:0016563] [evidence IDA] [pmid 12359070]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IDA] [pmid 12359070] --- --- --- --- --- --- S0000030 // PRP45 SGDID:S0000030, Chr I from 84475-83336, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018173 // cdna:GeneFinder chromosome:SGD1:I:83336:84475:-1 // ensembl // 11 // --- /// GENSCAN00000020351 // cdna:Genscan chromosome:SGD1:I:83336:84475:-1 // ensembl // 11 // --- /// YAL032C // cdna:known chromosome:SGD1:I:83336:84475:-1 gene:YAL032C // ensembl // 11 // --- --- No cerevisiae_gene -1.25148129664778 -2.23916187123103 1.12410845269628 -1.47390525383921 1.06427418950491 Max fold change below threshold 4 2.23916187123103 Max fold change at or above threshold 0.702788521106744 -1.21626992954431 -0.412192840567751 0.925674249005319 539.658477783203 195.178775629629 0.361670915337752 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772959_at YBR213W.S1 Bifunctional dehydrogenase and ferrochelatase, involved in the biosynthesis of siroheme; also involved in the expression of PAPS reductase and sulfite reductase 2.23912648283297 225.430534362793 515.178070068359 MET8 103 // sulfate assimilation // inferred from mutant phenotype /// 19354 // siroheme biosynthesis // inferred from mutant phenotype --- 4325 // ferrochelatase activity // inferred from direct assay /// 43115 // precorrin-2 dehydrogenase activity // inferred from direct assay 471.928466796875 210.764541625977 240.096527099609 558.427673339844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR213W /GEN=MET8 /DB_XREF=GI:6319690 /SEG=NC_001134:+650325,651149 /DEF=Bifunctional dehydrogenase and ferrochelatase, involved in the biosynthesis of siroheme; also involved in the expression of PAPS reductase and sulfite reductase /NOTE=Met8p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: ferrochelatase activity [goid GO:0004325] [evidence IDA] [pmid 11980703]; go_function: sirohydrochlorin dehydrogenase activity [goid GO:0043115] [evidence IDA] [pmid 10051442]; go_process: siroheme biosynthesis [goid GO:0019354] [evidence IMP] [pmid 9003798]; go_process: sulfate assimilation [goid GO:0000103] [evidence IMP] [pmid 10051442] --- --- --- --- --- --- S0000417 // MET8 SGDID:S0000417, Chr II from 650363-651187, Verified ORF // sgd // 10 // --- /// GENSCAN00000021310 // cdna:Genscan chromosome:SGD1:II:650363:651187:1 // ensembl // 10 // --- /// GENEFINDER00000022273 // cdna:GeneFinder chromosome:SGD1:II:650363:651187:1 // ensembl // 10 // --- /// YBR213W // cdna:known chromosome:SGD1:II:650363:651187:1 gene:YBR213W // ensembl // 10 // --- --- No cerevisiae_gene -1.57350625723074 -2.23912648283297 1.0701829625058 -1.96557806353061 1.18328880885289 Max fold change below threshold 4 2.23912648283297 Max fold change at or above threshold 0.592936741675408 -0.930851300981616 -0.759710785679345 1.09762534498555 370.304302215576 171.391241996825 0.462838916457006 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772240_at YLR422W.S1 Hypothetical protein 2.23893846336377 919.899749755859 1794.30590820313 --- --- 5737 // cytoplasm // inferred from direct assay --- 1792.17895507813 928.369323730469 911.43017578125 1796.43286132813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR422W /GEN=RPN13 /DB_XREF=GI:6323454 /SEG=NC_001144:+965893,971691 /DEF=Hypothetical ORF /NOTE=Ylr422wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 4.59999990463257 --- S0004414 // YLR422W SGDID:S0004414, Chr XII from 965893-971691, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018137 // cdna:Genscan chromosome:SGD1:XII:965893:971691:1 // ensembl // 11 // --- /// GENEFINDER00000024705 // cdna:GeneFinder chromosome:SGD1:XII:967009:971691:1 // ensembl // 11 // --- /// YLR422W // cdna:known chromosome:SGD1:XII:965893:971691:1 gene:YLR422W // ensembl // 11 // --- --- No cerevisiae_gene -2.23893846336377 -1.93045904174926 -1.22960414055356 -1.96633708505638 1.00237359457768 Max fold change below threshold 4 2.23893846336377 Max fold change at or above threshold 0.861726327331754 -0.84916392033553 -0.882714163327029 0.870151756330805 1357.10282897949 504.888979597271 0.372034431596414 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772764_at SPCC1322.11.S1 --- 2.23883205906545 --- --- --- --- 6.35780191421509 6.48317432403564 7.00023031234741 13.1646385192871 0.5 0.567627012729645 0.466064006090164 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1322.11 /GEN=rpl2302 /DEF=60S ribosomal protein L23 --- --- --- --- --- --- SPCC1322.11 // |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.23883205906545 1.01971945831471 1.89392420182975 1.10104567691799 2.07062734840055 Max fold change below threshold 4 2.23883205906545 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772716_at YNL108C.S1 Hypothetical protein 2.23877256576861 511.021545410156 1062.55334472656 --- 8152 // metabolism // inferred from genetic interaction /// 8152 // metabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1020.20690917969 455.69921875 566.343872070313 1104.89978027344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL108C /GEN=NOP15 /DB_XREF=GI:6324221 /SEG=NC_001146:-419014,419826 /DEF=Hypothetical ORF /NOTE=Ynl108cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: metabolism [goid GO:0008152] [evidence IGI,IMP] [pmid 10824121] --- --- --- --- --- --- S0005052 // YNL108C SGDID:S0005052, Chr XIV from 419826-419014, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019946 // cdna:Genscan chromosome:SGD1:XIV:419014:419826:-1 // ensembl // 11 // --- /// GENEFINDER00000020666 // cdna:GeneFinder chromosome:SGD1:XIV:419014:419826:-1 // ensembl // 11 // --- /// YNL108C // cdna:known chromosome:SGD1:XIV:419014:419826:-1 gene:YNL108C // ensembl // 11 // --- YNL109W // ensembl // 8 // Negative Strand Matching Probes No cerevisiae_gene 1.23005886304993 -2.23877256576861 -1.21286624017104 -1.80139127390969 1.08301538671391 Max fold change below threshold 4 2.23877256576861 Max fold change at or above threshold 0.72161503719534 -1.02355749834003 -0.681500138534245 0.983442599678937 786.787445068359 323.468126466081 0.411125175539598 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774820_at YOR287C.S1 Protein required for cell viability 2.23772425663183 109.417369842529 162.88158416748 --- 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype --- --- 142.892547607422 125.839469909668 92.9952697753906 182.870620727539 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR287C /GEN=HUA2 /DB_XREF=GI:6324861 /SEG=NC_001147:-850934,851836 /DEF=Protein required for cell viability /NOTE=Yor287cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP] [pmid 12837249] --- --- --- --- --- --- S0005813 // YOR287C SGDID:S0005813, Chr XV from 851836-850934, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022744 // cdna:GeneFinder chromosome:SGD1:XV:850663:851836:-1 // ensembl // 11 // --- /// GENSCAN00000017731 // cdna:Genscan chromosome:SGD1:XV:850934:851836:-1 // ensembl // 11 // --- /// YOR287C // cdna:known chromosome:SGD1:XV:850934:851836:-1 gene:YOR287C // ensembl // 11 // --- --- No cerevisiae_gene 2.23772425663183 -1.13551453856247 -1.35310837893252 -1.53655715987003 1.27977717375403 Max fold change below threshold 4 2.23772425663183 Max fold change at or above threshold 0.180282341306934 -0.275647746795385 -1.15376836093201 1.24913376642046 136.149477005005 37.402834651103 0.274718900680963 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776936_at YOL056W.S1 Homolog of Gpm1p phosphoglycerate mutase which converts 3-phosphoglycerate to 2-phosphoglycerate in glycolysis; may be non-functional derivative of a gene duplication event 2.23750870047709 149.957679748535 336.834655761719 GPM3 --- 5829 // cytosol // traceable author statement 4619 // phosphoglycerate mutase activity // inferred from mutant phenotype 330.116180419922 147.537384033203 152.377975463867 343.553131103516 0.00195312988944352 0.00292969006113708 0.00195312988944352 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL056W /GEN=GPM3 /DB_XREF=GI:6324516 /SEG=NC_001147:+223266,224177 /DEF=converts 3-phosphoglycerate to 2-phosphoglycerate in glycolysis /NOTE=Gpm3p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: phosphoglycerate mutase activity [goid GO:0004619] [evidence IMP] [pmid 9544241]; go_process: gluconeogenesis [goid GO:0006094] [evidence TAS]; go_process: glycolysis [goid GO:0006096] [evidence TAS] --- --- --- --- --- --- S0005417 // GPM3 SGDID:S0005417, Chr XV from 223266-224177, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022818 // cdna:GeneFinder chromosome:SGD1:XV:223266:224177:1 // ensembl // 11 // --- /// GENSCAN00000017424 // cdna:Genscan chromosome:SGD1:XV:223488:224177:1 // ensembl // 11 // --- /// YOL056W // cdna:known chromosome:SGD1:XV:223266:224177:1 gene:YOL056W // ensembl // 11 // --- --- No cerevisiae_gene -1.3761838734067 -2.23750870047709 1.08462116100335 -2.16642975741728 1.04070370215268 Max fold change below threshold 4 2.23750870047709 Max fold change at or above threshold 0.802584771400412 -0.887163154802149 -0.842363980454248 0.926942363855985 243.396167755127 108.050907212554 0.44393019088641 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770126_at SPCC1494.05c.S1 --- 2.23696107856788 --- --- --- --- 6.33359050750732 14.1679954528809 12.1855983734131 3.73237657546997 0.219482004642487 0.0461426004767418 0.129638999700546 0.149657994508743 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1494.05c /GEN=ubp12 /DEF=ubiquitin C-terminal hydrolase activity --- --- --- --- --- --- SPCC1494.05c // |ubp12||ubiquitin C-terminal hydrolase activity|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.7157153072516 2.23696107856788 1.31575542017611 1.92396372309976 -1.69693233773171 Max fold change below threshold 4 2.23696107856788 Max fold change at or above threshold APPAAA No 4 0 APAA 3 1 0 No No x = 1
1773460_at YER162C.S1 Protein that recognizes and binds damaged DNA (with Rad23p) during nucleotide excision repair; subunit of Nuclear Excision Repair Factor 2 (NEF2); homolog of human XPC protein 2.23690426934746 476.654754638672 462.21501159668 RAD4 715 // nucleotide-excision repair, DNA damage recognition // traceable author statement 108 // repairosome // inferred from direct assay /// 111 // nucleotide excision repair factor 2 complex // inferred from direct assay 3684 // damaged DNA binding // inferred from direct assay 396.804412841797 295.706726074219 657.602783203125 527.625610351563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER162C /GEN=RAD4 /DB_XREF=GI:6321010 /SEG=NC_001137:-500625,502889 /DEF=Protein that recognizes and binds damaged DNA (with Rad23p) during nucleotide excision repair; subunit of Nuclear Excision Repair Factor 2 (NEF2); homolog of human XPC protein /NOTE=Rad4p; go_component: nucleotide excision repair factor 2 complex [goid GO:0000111] [evidence IDA] [pmid 7768886]; go_component: repairosome [goid GO:0000108] [evidence IDA] [pmid 7813015]; go_function: damaged DNA binding [goid GO:0003684] [evidence IDA] [pmid 9837874]; go_process: nucleotide-excision repair, DNA damage recognition [goid GO:0000715] [evidence TAS] [pmid 10915862] --- --- --- --- --- --- S0000964 // RAD4 SGDID:S0000964, Chr V from 502889-500625, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016941 // cdna:Genscan chromosome:SGD1:V:500625:502889:-1 // ensembl // 11 // --- /// GENEFINDER00000019636 // cdna:GeneFinder chromosome:SGD1:V:500625:502889:-1 // ensembl // 11 // --- /// YER162C // cdna:known chromosome:SGD1:V:500625:502889:-1 gene:YER162C // ensembl // 11 // --- --- No cerevisiae_gene -2.23690426934746 -1.3418849753935 1.93892937558792 1.65724664827583 1.32968685144619 Max fold change below threshold 4 2.23690426934746 Max fold change at or above threshold -0.46166964611131 -1.1042888263999 1.19607387246683 0.369884600044374 469.434883117676 157.321302987217 0.335129127904585 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776500_at SPBC839.04.S1 --- 2.2366384740947 --- --- --- --- 3.06657195091248 6.24432849884033 6.85881280899048 2.62288784980774 0.601073980331421 0.665526986122131 0.533936023712158 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC839.04 /GEN=rpl803 /DEF=60S ribosomal protein L8 --- --- --- --- --- --- SPBC839.04 // |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L8|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.18608492249401 2.03625696667 1.16873279591607 2.2366384740947 -1.1691586245814 Max fold change below threshold 4 2.2366384740947 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775178_at YGR040W.S1 Mitogen-activated protein kinase (MAPK) involved in signal transduction pathways that control filamentous growth and pheromone response 2.23646008252417 48.2406826019287 82.3693351745605 KSS1 1402 // signal transduction during filamentous growth // inferred from genetic interaction /// 1402 // signal transduction during filamentous growth // inferred from mutant phenotype /// 1403 // invasive growth (sensu Saccharomyces) // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 4707 // MAP kinase activity // inferred from sequence similarity 83.1181945800781 37.1650695800781 59.3162956237793 81.620475769043 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR040W /GEN=KSS1 /DB_XREF=GI:6321477 /SEG=NC_001139:+575400,576506 /DEF=Recovery from alpha factor arrest /NOTE=Kss1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 7579701]; go_function: MAP kinase activity [goid GO:0004707] [evidence ISS] [pmid 8668180]; go_process: cell cycle arrest [goid GO:0007050] [evidence TAS] [pmid 10049917]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence ISS] [pmid 8668180]; go_process: pseudohyphal growth [goid GO:0007124] [evidence TAS] [pmid 9363895]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence TAS] [pmid 8668180] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-88 /// hanks // 3.1.7 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; PCTAIRE1 // 9.0E-81 --- --- S0003272 // KSS1 SGDID:S0003272, Chr VII from 575402-576508, Verified ORF // sgd // 11 // --- /// GENSCAN00000019373 // cdna:Genscan chromosome:SGD1:VII:575402:576508:1 // ensembl // 11 // --- /// GENEFINDER00000021467 // cdna:GeneFinder chromosome:SGD1:VII:575402:576508:1 // ensembl // 11 // --- /// YGR040W // cdna:known chromosome:SGD1:VII:575402:576508:1 gene:YGR040W // ensembl // 11 // --- --- No cerevisiae_gene -1.08697632021941 -2.23646008252417 -1.22656720047556 -1.40127082627117 -1.01834979270732 Max fold change below threshold 4 2.23646008252417 Max fold change at or above threshold 0.821304315733689 -1.29743516954841 -0.276118833255743 0.75224968707046 65.3050088882446 21.6888981959392 0.332116916683299 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775030_at YHR110W.S1 Protein with similarity to Emp24p and Erv25p, member of the p24 family involved in ER to Golgi transport 2.23635148628824 468.399841308594 864.239807128906 ERP5 45045 // secretory pathway // inferred from mutant phenotype 16021 // integral to membrane // inferred from sequence similarity --- 815.805297851563 364.79296875 572.006713867188 912.67431640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR110W /GEN=ERP5 /DB_XREF=GI:6321902 /SEG=NC_001140:+332284,332922 /DEF=Protein with similarity to Emp24p and Erv25p, member of the p24 family involved in ER to Golgi transport /NOTE=Erp5p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 10359606]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: secretory pathway [goid GO:0045045] [evidence IMP] [pmid 10359606] --- --- --- --- --- S0001152 // span:4-26,180-202 // numtm:2 S0001152 // ERP5 SGDID:S0001152, Chr VIII from 332284-332922, Verified ORF // sgd // 11 // --- /// GENSCAN00000016647 // cdna:Genscan chromosome:SGD1:VIII:332284:332922:1 // ensembl // 11 // --- /// YHR110W // cdna:known chromosome:SGD1:VIII:332284:332922:1 gene:YHR110W // ensembl // 11 // --- --- No cerevisiae_gene -1.28350844132823 -2.23635148628824 1.43896740977247 -1.42621629794538 1.11874036465538 Max fold change below threshold 4 2.23635148628824 Max fold change at or above threshold 0.605497445084456 -1.22134770806655 -0.382019375983731 0.997869638965824 666.31982421875 246.880436649839 0.370513419646943 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771742_at SPAC5H10.01.S1 --- 2.23575732516645 --- --- --- --- 8.93404960632324 11.8000936508179 4.68797922134399 3.99598360061646 0.028564453125 0.0805663987994194 0.129638999700546 0.0805663987994194 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5H10.01 /DEF=conserved protein (broad species distribution) --- --- --- --- --- --- SPAC5H10.01 // |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.22126769344689 1.32080010418412 -1.17347428007026 -1.90573575190932 -2.23575732516645 Max fold change below threshold 4 2.23575732516645 Max fold change at or above threshold PPAPAA No 4 0 PAAA 3 1 0 No No x = 1
1780055_at YGR094W.S1 Mitochondrial and cytoplasmic valyl-tRNA synthetase 2.23567676555021 2044.96276855469 1322.44268798828 VAS1 6438 // valyl-tRNA aminoacylation // inferred from direct assay 5737 // cytoplasm // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from direct assay 4832 // valine-tRNA ligase activity // inferred from sequence similarity 1277.93542480469 1889.61303710938 2200.3125 1366.94995117188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR094W /GEN=VAS1 /DB_XREF=GI:6321531 /SEG=NC_001139:+672188,675502 /DEF=mitochondrial and cytoplasmic valyl-tRNA synthetase /NOTE=Vas1p; go_component: cytoplasm [goid GO:0005737] [evidence IMP] [pmid 3275649]; go_component: mitochondrion [goid GO:0005739] [evidence IMP] [pmid 3275649]; go_function: valine-tRNA ligase activity [goid GO:0004832] [evidence ISS] [pmid 3294828]; go_process: valyl-tRNA aminoacylation [goid GO:0006438] [evidence IDA] [pmid 782885] --- --- --- --- --- --- S0003326 // VAS1 SGDID:S0003326, Chr VII from 672190-675504, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021499 // cdna:GeneFinder chromosome:SGD1:VII:672328:675504:1 // ensembl // 11 // --- /// GENSCAN00000019413 // cdna:Genscan chromosome:SGD1:VII:672835:675504:1 // ensembl // 11 // --- /// YGR094W // cdna:known chromosome:SGD1:VII:672190:675504:1 gene:YGR094W // ensembl // 11 // --- --- No cerevisiae_gene 2.23567676555021 1.47864516503107 -1.20082327967995 1.72177127051336 1.06965494862997 Max fold change below threshold 4 2.23567676555021 Max fold change at or above threshold -0.927431469514679 0.470633534743079 1.18077567035666 -0.723977735585057 1683.70272827148 437.517290284675 0.259854238481776 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-18srRnab_at AFFX-18srRnab --- 2.23537479482139 895.126678466797 770.706268310547 --- --- --- --- 964.447570800781 1358.80554199219 431.447814941406 576.964965820313 4.42872878920753E-5 4.42872878920753E-5 4.42872878920753E-5 4.42872878920753E-5 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /GEN=18S rRNA /DB_XREF=gb:Z75578.1 /NOTE=SIF corresponding to nucleotides 402-603 of gb:Z75578.1 /DEF=S.cerevisiae 18S rRNA gene. --- --- --- --- --- --- L10741 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 18S ribosomal RNA, partial. // gb // 0 // chr12:465251-465539(-) /// L22158 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA (18S rRNA) fragment. // gb // 0 // chr12:465277-465545(-) /// L19742 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA fragment. // gb // 0 // chr12:465277-465547(-) /// L10741 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 18S ribosomal RNA, partial. // gb // 0 // chr12:456114-456402(-) /// L22158 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA (18S rRNA) fragment. // gb // 0 // chr12:456140-456408(-) /// L19742 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA fragment. // gb // 0 // chr12:456140-456410(-) --- AFFX_control cerevisiae_gene -1.27282121670894 1.40889518842789 1.14940604723258 -2.23537479482139 -1.67158775304417 Max fold change below threshold 4 2.23537479482139 Max fold change at or above threshold 0.315761138928068 1.26247963043893 -0.963788817469115 -0.614451951897882 832.916473388672 416.552517699377 0.500113193829218 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 No No 3 < x
1772769_at SPAC17C9.07.S1 --- 2.23515927310128 --- --- --- --- 3.64956545829773 6.81083822250366 8.1573600769043 2.73703813552856 0.366210997104645 0.029052734375 0.0952147990465164 0.303710997104645 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17C9.07 /DEF=glycosyl transferase family ALG8 (predicted) --- --- --- --- --- --- SPAC17C9.07 // |||glycosyl transferase family ALG8 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.92921812494116 1.8662052510987 1.18418460315925 2.23515927310128 -1.33339956463301 Max fold change below threshold 4 2.23515927310128 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1780109_at SPCC2H8.05c.S1 --- 2.23508034657821 --- --- --- --- 5.52059698104858 12.3389778137207 7.7737512588501 3.92782950401306 0.0239257998764515 0.0239257998764515 0.018554700538516 0.149657994508743 P P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC2H8.05c /DEF=hypothetical protein --- --- --- --- --- --- SPCC2H8.05c // ||SPCC63.01c|sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.11623195040174 2.23508034657821 1.45664701739948 1.4081359833975 -1.40550830309925 Max fold change below threshold 4 2.23508034657821 Max fold change at or above threshold PAPPPA No 4 0 PPPA 1 3 0 No No 2 < x = 3
1779589_at YDL146W.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck 2.23470442514557 251.06778717041 120.97492980957 --- --- 5737 // cytoplasm // inferred from direct assay /// 5933 // bud // inferred from direct assay /// 5935 // bud neck // inferred from direct assay --- 121.925437927246 272.467315673828 229.668258666992 120.024421691895 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244140625 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL146W /GEN=RPN5 /DB_XREF=GI:6320055 /SEG=NC_001136:+192751,194226 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck /NOTE=Ydl146wp; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 14562095]; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 14562095]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 1.10000002384186 --- S0002305 // YDL146W SGDID:S0002305, Chr IV from 192751-194226, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023886 // cdna:GeneFinder chromosome:SGD1:IV:193051:194226:1 // ensembl // 11 // --- /// YDL146W // cdna:known chromosome:SGD1:IV:192751:194226:1 gene:YDL146W // ensembl // 11 // --- --- No cerevisiae_gene 1.09019160302186 2.23470442514557 1.05440901079412 1.88367794753411 -1.01583857858721 Max fold change below threshold 4 2.23470442514557 Max fold change at or above threshold -0.831134326799794 1.12094813207683 0.56597107393128 -0.855784879208316 186.02135848999 77.1186058570575 0.414568555369448 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778912_at YNL061W.S1 Probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis; localized to the nucleolus; constituent of 66S pre-ribosomal particles 2.23470007472748 1056.07241821289 832.246978759766 NOP2 6364 // rRNA processing // traceable author statement 5730 // nucleolus // traceable author statement 8173 // RNA methyltransferase activity // traceable author statement /// 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from sequence similarity 774.542907714844 848.839172363281 1263.3056640625 889.951049804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL061W /GEN=NOP2 /DB_XREF=GI:6324268 /SEG=NC_001146:+510538,512394 /DEF=Probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis; localized to the nucleolus /NOTE=Nop2p; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 10690410]; go_function: RNA methyltransferase activity [goid GO:0008173] [evidence TAS] [pmid 10690410]; go_function: S-adenosylmethionine-dependent methyltransferase activity [goid GO:0008757] [evidence ISS] [pmid 12872006]; go_process: rRNA processing [goid GO:0006364] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0005005 // NOP2 SGDID:S0005005, Chr XIV from 510539-512395, Verified ORF // sgd // 11 // --- /// GENSCAN00000019985 // cdna:Genscan chromosome:SGD1:XIV:510539:512395:1 // ensembl // 11 // --- /// GENEFINDER00000020543 // cdna:GeneFinder chromosome:SGD1:XIV:510539:512395:1 // ensembl // 11 // --- /// YNL061W // cdna:known chromosome:SGD1:XIV:510539:512395:1 gene:YNL061W // ensembl // 11 // --- --- No cerevisiae_gene 2.23470007472748 1.09592272281937 -1.20618685752577 1.63103380262001 1.14900161235784 Max fold change below threshold 4 2.23470007472748 Max fold change at or above threshold -0.777849788128166 -0.437132731446198 1.46357928702846 -0.248596767454094 944.159698486328 218.058542099309 0.230955147152436 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779669_at YMR158W.S1 Mitochondrial ribosomal protein of the small subunit 2.23461577378699 248.727500915527 500.573455810547 MRPS8 6412 // protein biosynthesis // inferred from curator 5763 // mitochondrial small ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // inferred from sequence similarity /// 3735 // structural constituent of ribosome // inferred from physical interaction 468.743835449219 209.764846801758 287.690155029297 532.403076171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR158W /GEN=MRPS8 /DB_XREF=GI:6323808 /SEG=NC_001145:+572247,572714 /DEF=Mitochondrial ribosomal protein of the small subunit /NOTE=Mrps8p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IPI] [pmid 12392552]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IPI,ISS] [pmid 12392552]; go_process: protein biosynthesis [goid GO:0006412] [evidence IC] [pmid 12392552] --- --- --- --- --- --- S0004767 // MRPS8 SGDID:S0004767, Chr XIII from 572247-572714, Verified ORF // sgd // 11 // --- /// YMR158W // cdna:known chromosome:SGD1:XIII:572247:572714:1 gene:YMR158W // ensembl // 11 // --- --- No cerevisiae_gene -1.09927366112111 -2.23461577378699 1.59927584985167 -1.62933568373754 1.13580816622719 Max fold change below threshold 4 2.23461577378699 Max fold change at or above threshold 0.622744322425523 -1.0912735402807 -0.575535290793949 1.04406450864912 374.650478363037 151.094684765167 0.403295053633311 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776969_at YOR034C-A.S1 Identified by expression profiling and mass spectrometry 2.23425661728215 1007.14038085938 519.739791870117 --- --- --- --- 493.240020751953 1102.02478027344 912.255981445313 546.239562988281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR034C-A /GEN=AKR2 /DB_XREF=GI:33438882 /SEG=NC_001147:-397425,397667 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Yor034c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028856 // span:10-29 // numtm:1 S0028856 // YOR034C-A SGDID:S0028856, Chr XV from 397667-397425, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YOR034C-A // cdna:known chromosome:SGD1:XV:397425:397667:-1 gene:YOR034C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.68668573983853 2.23425661728215 1.35417410028864 1.84951736084708 1.10745182873752 Max fold change below threshold 4 2.23425661728215 Max fold change at or above threshold -0.923219444085668 1.15687600658931 0.508474073149473 -0.742130635653117 763.440086364746 292.671549915624 0.38335889763037 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772394_at YML118W.S1 Putative endonuclease, has a domain similar to a magnesium-dependent endonuclease motif in mRNA deadenylase Ccr4p; similar to Ngl1p and Ngl2p 2.23401755326828 2217.86541748047 1082.34582519531 NGL3 --- --- 4519 // endonuclease activity // inferred from sequence similarity 1088.24719238281 2431.16333007813 2004.56750488281 1076.44445800781 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML118W /GEN=NGL3 /DB_XREF=GI:6323517 /SEG=NC_001145:+32334,33851 /DEF=DNase/RNase (putative); CCR4 C-terminal homolog; displays homology to drosophila Angel gene; homolog to ngl1 and ngl2 /NOTE=Ngl3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: endonuclease activity [goid GO:0004519] [evidence ISS] [pmid 12358428]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004587 // NGL3 SGDID:S0004587, Chr XIII from 32334-33851, Verified ORF // sgd // 11 // --- /// GENSCAN00000018617 // cdna:Genscan chromosome:SGD1:XIII:32334:33851:1 // ensembl // 11 // --- /// GENEFINDER00000021962 // cdna:GeneFinder chromosome:SGD1:XIII:32334:33851:1 // ensembl // 11 // --- /// YML118W // cdna:known chromosome:SGD1:XIII:32334:33851:1 gene:YML118W // ensembl // 11 // --- --- No cerevisiae_gene -1.9008506248662 2.23401755326828 1.59139593048553 1.84201486474193 -1.01096455491707 Max fold change below threshold 4 2.23401755326828 Max fold change at or above threshold -0.828275105077179 1.15141221069032 0.52253724196153 -0.845674347574674 1650.10562133789 678.347599138241 0.411093441756924 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772586_at YDR030C.S1 Protein involved in transcription-coupled repair nucleotide excision repair of UV-induced DNA lesions; homolog of human CSA protein 2.23287138210853 711.303863525391 750.787902832031 RAD28 6281 // DNA repair // inferred from mutant phenotype 5634 // nucleus // inferred from curator --- 728.515991210938 752.457824707031 670.14990234375 773.059814453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR030C /GEN=RAD28 /DB_XREF=GI:6320233 /SEG=NC_001136:-501749,503269 /DEF=Protein involved in transcription-coupled repair nucleotide exicision repair of UV-induced DNA lesions; homolog of human CSA protein /NOTE=Rad28p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 8830695]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 8830695] --- --- --- --- --- --- S0002437 // RAD28 SGDID:S0002437, Chr IV from 503269-501749, reverse complement, Verified ORF // sgd // 11 // --- /// YDR030C // cdna:known chromosome:SGD1:IV:501749:503269:-1 gene:YDR030C // ensembl // 11 // --- --- No cerevisiae_gene -2.23287138210853 1.03286384071858 -1.13848234351742 -1.08709407949335 1.06114323333953 Max fold change below threshold 4 2.23287138210853 Max fold change at or above threshold -0.0568629322472584 0.481263941668901 -1.36872407061566 0.944323061194021 731.045883178711 44.4910571402236 0.0608594592541428 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776290_at YIL158W.S1 Hypothetical protein 2.23231629313209 81.6503524780273 204.858192443848 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 178.052124023438 79.7611541748047 83.53955078125 231.664260864258 0.000244141003349796 0.00415039015933871 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL158W /GEN=BNR1 /DB_XREF=GI:6322033 /SEG=NC_001141:+46201,46815 /DEF=Hypothetical ORF /NOTE=Yil158wp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001420 // span:5-27 // numtm:1 S0001420 // YIL158W SGDID:S0001420, Chr IX from 46201-46815, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000019070 // cdna:GeneFinder chromosome:SGD1:IX:41825:46815:1 // ensembl // 11 // --- /// GENSCAN00000016355 // cdna:Genscan chromosome:SGD1:IX:46201:46815:1 // ensembl // 11 // --- /// YIL158W // cdna:known chromosome:SGD1:IX:46201:46815:1 gene:YIL158W // ensembl // 11 // --- --- No cerevisiae_gene 1.74599702592138 -2.23231629313209 -1.39413813956036 -2.1313512265546 1.30110360735581 Max fold change below threshold 4 2.23231629313209 Max fold change at or above threshold 0.46745470845684 -0.852930734650434 -0.802173886029251 1.18764991222285 143.254272460938 74.4411189639624 0.519643272658838 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773102_at YKL130C.S1 RNA-binding protein that binds specific mRNAs and interacts with She3p; part of the mRNA localization machinery that restricts accumulation of certain proteins to the bud 2.23198342761814 188.586280822754 402.794784545898 SHE2 8298 // intracellular mRNA localization // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 3729 // mRNA binding // inferred from direct assay 393.866027832031 200.707977294922 176.464584350586 411.723541259766 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL130C /GEN=SHE2 /DB_XREF=GI:6322719 /SEG=NC_001143:-195289,196029 /DEF=RNA-binding protein that binds specific mRNAs and interacts with She3p; part of the mRNA localization machinery that restricts accumulation of certain proteins to the bud /NOTE=She2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 8625407]; go_function: mRNA binding [goid GO:0003729] [evidence IDA] [pmid 11101531]; go_process: mRNA localization, intracellular [goid GO:0008298] [evidence IDA] [pmid 11032818] --- --- --- --- --- --- S0001613 // SHE2 SGDID:S0001613, Chr XI from 196029-195289, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018319 // cdna:Genscan chromosome:SGD1:XI:195289:196029:-1 // ensembl // 11 // --- /// YKL130C // cdna:known chromosome:SGD1:XI:195289:196029:-1 gene:YKL130C // ensembl // 11 // --- --- No cerevisiae_gene -1.10548827880413 -1.96238352426462 1.03355138870444 -2.23198342761814 1.04533905482031 Max fold change below threshold 4 2.23198342761814 Max fold change at or above threshold 0.789936671461583 -0.764245737068486 -0.959312185152824 0.933621250759727 295.690532684326 124.282741508956 0.420313563578439 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776763_at YPL256C.S1 G1 cyclin involved in regulation of the cell cycle; activates Cdc28p kinase to promote the G1 to S phase transition; late G1 specific expression depends on transcription factor complexes, MBF (Swi6p-Mbp1p) and SBF (Swi6p-Swi4p) 2.23189306936215 68.637638092041 93.1274528503418 CLN2 79 // regulation of cyclin dependent protein kinase activity // traceable author statement /// 321 // re-entry into mitotic cell cycle after pheromone arrest // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5737 // cytoplasm // inferred from mutant phenotype 16538 // cyclin-dependent protein kinase regulator activity // traceable author statement 84.8111343383789 58.6641616821289 78.6111145019531 101.443771362305 0.000244141003349796 0.007568359375 0.00415039015933871 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL256C /GEN=CLN2 /DB_XREF=GI:6324999 /SEG=NC_001148:-64977,66614 /DEF=role in cell cycle START /NOTE=Cln2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA,IMP] [pmid 11509671]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11792824]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS]; go_process: re-entry into mitotic cell cycle after pheromone arrest [goid GO:0000321] [evidence IGI] [pmid 9927449]; go_process: regulation of cyclin dependent protein kinase activity [goid GO:0000079] [evidence TAS] --- --- --- --- --- --- S0006177 // CLN2 SGDID:S0006177, Chr XVI from 66614-64977, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016989 // cdna:Genscan chromosome:SGD1:XVI:64977:66614:-1 // ensembl // 11 // --- /// GENEFINDER00000020864 // cdna:GeneFinder chromosome:SGD1:XVI:64977:66614:-1 // ensembl // 11 // --- /// YPL256C // cdna:known chromosome:SGD1:XVI:64977:66614:-1 gene:YPL256C // ensembl // 11 // --- --- No cerevisiae_gene 2.23189306936215 -1.44570606493837 -1.41304590309907 -1.0788695068847 1.1961138375719 Max fold change below threshold 4 2.23189306936215 Max fold change at or above threshold 0.222292195901295 -1.2571876286419 -0.128524871158549 1.16342030389916 80.8825454711914 17.6730849738509 0.218503075921933 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1779827_at YMR285C.S1 Protein involved in 5.8S rRNA processing; Ccr4p-like RNase required for correct 3'-end formation of 5.8S rRNA at site E; similar to Ngl1p and Ngl3p 2.2318299046352 366.796493530273 791.747772216797 NGL2 6364 // rRNA processing // inferred from mutant phenotype 5622 // intracellular // inferred from direct assay 4521 // endoribonuclease activity // inferred from mutant phenotype /// 4521 // endoribonuclease activity // inferred from sequence similarity 788.211242675781 380.424835205078 353.168151855469 795.284301757813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR285C /GEN=NGL2 /DB_XREF=GI:6323941 /SEG=NC_001145:-840143,841690 /DEF=correct 3'-end formation of 5.8S rRNA at site E is strictly dependent on Ngl2p. /NOTE=Ngl2p; go_component: intracellular [goid GO:0005622] [evidence IDA] [pmid 12358428]; go_function: endoribonuclease activity [goid GO:0004521] [evidence IMP,ISS] [pmid 12358428]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 12358428] --- --- --- --- --- --- S0004898 // NGL2 SGDID:S0004898, Chr XIII from 841690-840143, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018954 // cdna:Genscan chromosome:SGD1:XIII:840143:841690:-1 // ensembl // 11 // --- /// GENEFINDER00000022055 // cdna:GeneFinder chromosome:SGD1:XIII:840143:841690:-1 // ensembl // 11 // --- /// YMR285C // cdna:known chromosome:SGD1:XIII:840143:841690:-1 gene:YMR285C // ensembl // 11 // --- --- No cerevisiae_gene -1.34249795283937 -2.07192372772108 1.12499228553576 -2.2318299046352 1.00897355772042 Max fold change below threshold 4 2.2318299046352 Max fold change at or above threshold 0.850677596577166 -0.809589652346881 -0.920562891892393 0.879474947662108 579.272132873535 245.614919968441 0.424006103573539 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777783_at SPAC824.05.S1 --- 2.22985295128655 --- --- --- --- 0.407487750053406 0.439681649208069 0.908637762069702 0.409538835287094 0.932372987270355 0.943848013877869 0.850341975688934 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC824.05 /GEN=vps16 /DEF=involved in intracellular protein transport (predicted) --- --- --- --- --- --- SPAC824.05 // |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.27082297839102 1.07900580851926 1.37742181317661 2.22985295128655 1.0050334893096 Max fold change below threshold 0 2.22985295128655 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779777_at SPAC19G12.03.S1 --- 2.22946920679465 --- --- --- --- 13.8921775817871 14.3430404663086 17.0553970336914 6.23115921020508 0.0375977009534836 0.030273400247097 0.014160200022161 0.0676269978284836 P P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19G12.03 /DEF=polysaccharide deacetylase (predicted) --- --- --- --- --- --- SPAC19G12.03 // |cda1||chitin deacetylase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.02455201222375 1.03245444293144 1.1097766568884 1.22769788489109 -2.22946920679465 Max fold change below threshold 4 2.22946920679465 Max fold change at or above threshold PAPPPA No 4 0 PPPA 1 3 0 No No 2 < x = 3
1779677_at YDR142C.S1 Peroxisomal signal receptor for the N-terminal nonapeptide signal (PTS2) of peroxisomal matrix proteins; WD repeat protein; defects in human homolog cause lethal rhizomelic chondrodysplasia punctata (RCDP) 2.22913731933942 606.365142822266 1215.16723632813 PEX7 6625 // protein-peroxisome targeting // traceable author statement /// 6625 // protein-peroxisome targeting // inferred from mutant phenotype /// 7031 // peroxisome organization and biogenesis // traceable author statement 5782 // peroxisomal matrix // traceable author statement /// 5782 // peroxisomal matrix // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 5051 // peroxisome targeting signal receptor activity // traceable author statement /// 5053 // peroxisome targeting signal-2 receptor activity // inferred from physical interaction 1152.34875488281 516.948303222656 695.781982421875 1277.98571777344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR142C /GEN=PEX7 /DB_XREF=GI:6320346 /SEG=NC_001136:-740467,741594 /DEF=May serve as intraperoxisomal receptor for type 2 peroxisomal proteins (such as thiolase) /NOTE=Pex7p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 9864360]; go_component: peroxisomal matrix [goid GO:0005782] [evidence TAS]; go_component: peroxisomal matrix [goid GO:0005782] [evidence IDA] [pmid 9864360]; go_function: peroxisome targeting signal receptor activity [goid GO:0005051] [evidence TAS]; go_function: peroxisome targeting signal-2 receptor activity [goid GO:0005053] [evidence IPI] [pmid 8636211]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence TAS]; go_process: protein-peroxisome targeting [goid GO:0006625] [evidence TAS] [pmid 10087260] --- --- --- --- --- --- S0002549 // PEX7 SGDID:S0002549, Chr IV from 741595-740468, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023661 // cdna:GeneFinder chromosome:SGD1:IV:740468:741139:-1 // ensembl // 11 // --- /// GENSCAN00000025201 // cdna:Genscan chromosome:SGD1:IV:740468:741595:-1 // ensembl // 11 // --- /// YDR142C // cdna:known chromosome:SGD1:IV:740468:741595:-1 gene:YDR142C // ensembl // 11 // --- --- No cerevisiae_gene -2.19707899151254 -2.22913731933942 1.18664707070658 -1.65619229010749 1.10902685698081 Max fold change below threshold 4 2.22913731933942 Max fold change at or above threshold 0.666177595161596 -1.08597510804595 -0.592831117331486 1.01262863021584 910.766189575195 362.639883211647 0.398170120237766 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774716_at YDL234C.S1 GTPase-activating protein for yeast Rab family members including: Ypt7p (most effective), Ypt1p, Ypt31p, and Ypt32p (in vitro); involved in vesicle mediated protein trafficking 2.22829661585532 2332.76293945313 1128.94464111328 GYP7 16192 // vesicle-mediated transport // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 5097 // Rab GTPase activator activity // inferred from direct assay /// 5097 // Rab GTPase activator activity // inferred from mutant phenotype /// 5097 // Rab GTPase activator activity // inferred from physical interaction /// 5097 // Rab GTPase activator activity // inferred from sequence similarity 1073.09790039063 2391.18041992188 2274.34545898438 1184.79138183594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL234C /GEN=GYP7 /DB_XREF=GI:6319967 /SEG=NC_001136:-34238,36478 /DEF=GTPase-activating protein for yeast Rab family members including: Ypt7p (most effective), Ypt1p, Ypt31p, and Ypt32p (in vitro); involved in vesicle mediated protein trafficking /NOTE=Gyp7p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: Rab GTPase activator activity [goid GO:0005097] [evidence IDA,IMP,IPI,ISS] [pmid 10508155]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IDA] [pmid 11118206] --- --- --- --- --- --- S0002393 // GYP7 SGDID:S0002393, Chr IV from 36478-34238, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023494 // cdna:GeneFinder chromosome:SGD1:IV:34238:36478:-1 // ensembl // 11 // --- /// GENSCAN00000024927 // cdna:Genscan chromosome:SGD1:IV:34238:36478:-1 // ensembl // 11 // --- /// YDL234C // cdna:known chromosome:SGD1:IV:34238:36478:-1 gene:YDL234C // ensembl // 11 // --- --- No cerevisiae_gene -1.37000800109964 2.22829661585532 1.57612340512567 2.11942028603026 1.10408508059205 Max fold change below threshold 4 2.22829661585532 Max fold change at or above threshold -0.942140845802703 0.94582306128103 0.77847375949833 -0.782155974976657 1730.8537902832 698.15027426411 0.403356007412896 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777909_at YPL064C.S1 Component of a complex containing Cef1p, putatively involved in pre-mRNA splicing; has similarity to S. pombe Cwf27p 2.22757485571457 515.982894897461 969.53564453125 CWC27 --- 5681 // spliceosome complex // inferred from physical interaction --- 937.766662597656 610.984802246094 420.980987548828 1001.30462646484 0.000732421991415322 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL064C /GEN=CWC27 /DB_XREF=GI:6325193 /SEG=NC_001148:-428706,429611 /DEF=Component of a complex containing Cef1p, putatively involved in pre-mRNA splicing; has similarity to S. pombe Cwf27p /NOTE=Cwc27p; go_component: spliceosome complex [goid GO:0005681] [evidence IPI] [pmid 11884590]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005985 // CWC27 SGDID:S0005985, Chr XVI from 429613-428708, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017139 // cdna:Genscan chromosome:SGD1:XVI:428708:429613:-1 // ensembl // 11 // --- /// GENEFINDER00000020816 // cdna:GeneFinder chromosome:SGD1:XVI:428708:429613:-1 // ensembl // 11 // --- /// YPL064C // cdna:known chromosome:SGD1:XVI:428708:429613:-1 gene:YPL064C // ensembl // 11 // --- --- No cerevisiae_gene 1.08902819243667 -1.53484449883246 1.08731455226049 -2.22757485571457 1.06775455601203 Max fold change below threshold 4 2.22757485571457 Max fold change at or above threshold 0.710836282004786 -0.480341135447902 -1.17293849398474 0.942443347427861 742.759269714355 274.335170868484 0.369346007588684 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772736_at YLR245C.S1 Cytidine deaminase; catalyzes the modification of cytidine to uridine in vitro but native RNA substrates have not been identified, localizes to both the nucleus and cytoplasm 2.2270452879681 249.90657043457 171.994804382324 CDD1 6216 // cytidine catabolism // inferred from direct assay /// 6217 // deoxycytidine catabolism // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4126 // cytidine deaminase activity // inferred from direct assay 159.178985595703 145.314331054688 354.498809814453 184.810623168945 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR245C /GEN=CDD1 /DB_XREF=GI:6323274 /SEG=NC_001144:-626504,626932 /DEF=Involved in cytidine and deoxycytidine metabolism /NOTE=Cdd1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: cytidine deaminase activity [goid GO:0004126] [evidence IDA] [pmid 10501935]; go_process: cytidine catabolism [goid GO:0006216] [evidence IDA] [pmid 10501935]; go_process: deoxycytidine catabolism [goid GO:0006217] [evidence IDA] [pmid 10501935] --- --- --- --- --- --- S0004235 // CDD1 SGDID:S0004235, Chr XII from 626932-626504, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018010 // cdna:Genscan chromosome:SGD1:XII:626504:626932:-1 // ensembl // 11 // --- /// YLR245C // cdna:known chromosome:SGD1:XII:626504:626932:-1 gene:YLR245C // ensembl // 11 // --- --- No cerevisiae_gene 1.12185761171876 -1.09541147414977 1.77768824517439 2.2270452879681 1.16102400374848 Max fold change below threshold 4 2.2270452879681 Max fold change at or above threshold -0.533249193258785 -0.676055313010258 1.47854750349298 -0.269242997223938 210.950687408447 97.0872576409496 0.460236744585559 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771627_at YGR295C.S1 Protein involved in salt resistance; interacts with sodium:hydrogen antiporter Nha1p; member of a family of conserved, often subtelomerically-encoded proteins /// Protein of unknown function, member of a family of conserved, often subtelomerically-encoded proteins /// Protein of unknown function, member of a family of conserved, often subtelomerically-encoded proteins /// Protein of unknown function, member of a family of conserved, often subtelomerically-encoded proteins /// Protein of unknown function, member of a family of conserved, often subtelomerically-encoded proteins 2.22662159244064 9.08026123046875 8.26320433616638 COS3 /// COS1 /// COS6 /// COS4 /// COS2 6883 // sodium ion homeostasis // inferred from mutant phenotype 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5624 // membrane fraction // inferred from direct assay 5515 // protein binding // inferred from mutant phenotype 9.98115634918213 4.80915641784668 13.3513660430908 6.54525232315063 0.171387001872063 0.274170011281967 0.00292969006113708 0.030273400247097 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR295C /GEN=COS6 /DB_XREF=GI:6321734 /SEG=NC_001139:-1081589,1082734 /DEF=Protein of unknown function, member of a family of conserved, often subtelomerically-encoded proteins /NOTE=Cos6p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.59999990463257 S0000506 // span:46-63,73-95,233-255,259-281 // numtm:4 /// S0001832 // span:46-63,69-91,233-255,259-281 // numtm:4 /// S0003527 // span:46-63,69-91,233-251,256-270 // numtm:4 /// S0004601 // span:46-63,73-95,233-255,259-281 // numtm:4 /// S0005280 // span:46-63,73-95,233-255,261-283 // numtm:4 S0003527 // COS6 SGDID:S0003527, Chr VII from 1082735-1081590, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019568 // cdna:Genscan chromosome:SGD1:VII:1081590:1082291:-1 // ensembl // 11 // --- /// GENEFINDER00000021444 // cdna:GeneFinder chromosome:SGD1:VII:1081590:1082735:-1 // ensembl // 11 // --- /// YGR295C // cdna:known chromosome:SGD1:VII:1081590:1082735:-1 gene:YGR295C // ensembl // 11 // --- --- No cerevisiae_gene 1.09475433835712 -2.07544847411123 -2.22662159244064 1.33765723890147 -1.52494600000044 Max fold change below threshold 4 2.22662159244064 Max fold change at or above threshold 0.345644077853461 -1.01959112451154 1.23526684942374 -0.56131980276566 8.67173278331757 3.78835816888986 0.436862881219979 AAAAPP No 3 0 AAPP 2 2 0 No No 1 < x = 2
1769829_at YDR450W.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps18Ap and has similarity to E. coli S13 and rat S18 ribosomal proteins /// Protein component of the small (40S) ribosomal subunit; nearly identical to Rps18Bp and has similarity to E. coli S13 and rat S18 ribosomal proteins 2.22503265232337 1141.693359375 2394.97485351563 RPS18B /// RPS18A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 3735 // structural constituent of ribosome // traceable author statement 2537.6923828125 1140.51916503906 1142.86755371094 2252.25732421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR450W /GEN=RPS18A /DB_XREF=GI:6320658 /SEG=NC_001136:+1359911,1360786 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps18Bp and has similarity to E. coli S13 and rat S18 ribosomal proteins /NOTE=Rps18ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0002858 // RPS18A SGDID:S0002858, Chr IV from 1359913-1359959,1360395-1360788, intron sequence removed, Verified ORF // sgd // 11 // --- /// YDR450W // cdna:known chromosome:SGD1:IV:1359913:1360788:1 gene:YDR450W // ensembl // 11 // --- GENEFINDER00000023500 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 1.14834985955883 -2.22503265232337 -1.85013142135304 -2.22046060768154 -1.12673288061912 Max fold change below threshold 4 2.22503265232337 Max fold change at or above threshold 1.04973655664225 -0.856610392120894 -0.853406176979787 0.660280012458433 1768.33410644531 732.906052951137 0.414461300203284 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774881_at SPAC20H4.03c.S1 --- 2.22487959965355 --- --- --- --- 3.12102627754211 1.40278434753418 3.0359935760498 2.8284604549408 0.334473013877869 0.725830018520355 0.274170011281967 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20H4.03c /GEN=tfs1 /DEF=transcription elongation factor TFIIS (PMID 8904334) --- --- --- --- --- --- SPAC20H4.03c // |tfs1||transcription elongation factor TFIIS |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.73385094204273 -2.22487959965355 -1.53788018251275 -1.02800819545967 -1.10343641965729 Max fold change below threshold 3 2.22487959965355 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779567_at YLR308W.S1 Chitin deacetylase, together with Cda1p involved in the biosynthesis ascospore wall component, chitosan; required for proper rigidity of the ascospore wall 2.22424740813442 56.519079208374 39.5247278213501 CDA2 30476 // spore wall assembly (sensu Fungi) // inferred from direct assay /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 5631 // chitosan layer of spore wall // inferred from sequence similarity 4099 // chitin deacetylase activity // inferred from direct assay /// 4099 // chitin deacetylase activity // inferred from sequence similarity 30.5125598907471 58.3843650817871 54.6537933349609 48.5368957519531 0.00585938012227416 0.00415039015933871 0.00292969006113708 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR308W /GEN=CDA2 /DB_XREF=GI:6323339 /SEG=NC_001144:+747939,748877 /DEF=Required for proper formation of the ascospore wall /NOTE=Cda2p; go_component: chitosan layer of spore wall [goid GO:0005631] [evidence ISS] [pmid 8940152]; go_function: chitin deacetylase activity [goid GO:0004099] [evidence IDA,ISS] [pmid 8940152]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence IDA,IMP] [pmid 8940152] --- --- --- --- --- --- S0004299 // CDA2 SGDID:S0004299, Chr XII from 747939-748877, Verified ORF // sgd // 11 // --- /// GENSCAN00000018058 // cdna:Genscan chromosome:SGD1:XII:747939:748877:1 // ensembl // 11 // --- /// YLR308W // cdna:known chromosome:SGD1:XII:747939:748877:1 gene:YLR308W // ensembl // 11 // --- --- No cerevisiae_gene -2.22424740813442 1.91345351851295 -1.5218730069698 1.79119003881201 1.59071857378548 Max fold change below threshold 4 2.22424740813442 Max fold change at or above threshold -1.41677415907755 0.838481903583961 0.536621493339413 0.0416707621541716 48.0219035148621 12.3585989424844 0.257353374979391 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1772968_at YJL187C.S1 Protein kinase that regulates the G2/M transition by inhibition of Cdc28p kinase activity; localizes to the nucleus and to the daughter side of the mother-bud neck; homolog of S. pombe Wee1p; potential Cdc28p substrate 2.22423801339551 98.9471588134766 164.158340454102 SWE1 78 // cell morphogenesis checkpoint // inferred from direct assay /// 79 // regulation of cyclin dependent protein kinase activity // inferred from direct assay /// 86 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 86 // G2/M transition of mitotic cell cycle // inferred from direct assay /// 86 // G2/M transition of mitotic cell cycle // inferred from sequence similarity /// 40020 // regulation of meiosis // inferred from genetic interaction /// 40020 // regulation of meiosis // inferred from mutant phenotype /// 40020 // regulation of meiosis // inferred from expression pattern 5634 // nucleus // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 4672 // protein kinase activity // inferred from direct assay 141.792587280273 102.783660888672 95.1106567382813 186.52409362793 0.000244141003349796 0.000244141003349796 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL187C /GEN=SWE1 /DB_XREF=GI:6322274 /SEG=NC_001142:-76802,79261 /DEF=Protein kinase that regulates the G2/M transition by inhibition of Cdc28p kinase activity; localizes to the nucleus and to the daughter side of the mother-bud neck; homolog of S. pombe Wee1p; potential Cdc28p substrate /NOTE=Swe1p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 10805747]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10805747]; go_function: protein kinase activity [goid GO:0004672] [evidence IDA] [pmid 8253069]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence IDA,IMP,ISS] [pmid 8253069]; go_process: cell morphogenesis checkpoint [goid GO:0000078] [evidence IDA] [pmid 8930890]; go_process: regulation of cyclin dependent protein kinase activity [goid GO:0000079] [evidence IDA] [pmid 8253069]; go_process: regulation of meiosis [goid GO:0040020] [evidence IEP,IGI,IMP] [pmid 10619027] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-42 /// hanks // 1.4.4 // AGC group; AGC IV GPCR kinases; GRK5 // 1.0E-46 --- --- S0003723 // SWE1 SGDID:S0003723, Chr X from 79261-76802, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000023996 // cdna:Genscan chromosome:SGD1:X:76802:79261:-1 // ensembl // 11 // --- /// YJL187C // cdna:known chromosome:SGD1:X:76802:79261:-1 gene:YJL187C // ensembl // 11 // --- --- No cerevisiae_gene 2.22423801339551 -1.37952458644038 -1.55474567474569 -1.49081703505053 1.31547140231836 Max fold change below threshold 4 2.22423801339551 Max fold change at or above threshold 0.244027340160848 -0.685601124519063 -0.868457812144948 1.31003159650316 131.552749633789 41.961845913392 0.318973537460855 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774507_at YOR018W.S1 Membrane protein; overexpression confers resistance to the GST substrate o-dinitrobenzene as well as to zinc and calcium; contains 2 PY motifs, which are required for Rod1p interaction with Rsp5p, a hect-type ubiquitin ligase 2.2241666541498 480.478225708008 857.376708984375 ROD1 42493 // response to drug // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay --- 831.492431640625 562.088439941406 398.868011474609 883.260986328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR018W /GEN=ROD1 /DB_XREF=GI:6324592 /SEG=NC_001147:+364368,366881 /DEF=Membrane protein; overexpression confers resistance to the GST substrate o-dinitrobenzene as well as to zinc and calcium; contains a PY-motif, which is required for Rod1p interaction with Rsp5p, a hect-type ubiquitin ligase /NOTE=Rod1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 8621680]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to drug [goid GO:0042493] [evidence IMP] [pmid 12163175] --- --- --- --- --- --- S0005544 // ROD1 SGDID:S0005544, Chr XV from 364368-366881, Verified ORF // sgd // 11 // --- /// GENSCAN00000017479 // cdna:Genscan chromosome:SGD1:XV:364368:366881:1 // ensembl // 11 // --- /// GENEFINDER00000022868 // cdna:GeneFinder chromosome:SGD1:XV:364368:366881:1 // ensembl // 11 // --- /// YOR018W // cdna:known chromosome:SGD1:XV:364368:366881:1 gene:YOR018W // ensembl // 11 // --- --- No cerevisiae_gene -2.2241666541498 -1.47929110893528 -1.09553511747642 -2.08463052368278 1.06225980263627 Max fold change below threshold 4 2.2241666541498 Max fold change at or above threshold 0.711271143179488 -0.467453227011155 -1.18159222522456 0.937774309056225 668.927467346191 228.555545734281 0.341674631243683 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769797_at SPAC6F12.16c.S1 --- 2.22407089522113 --- --- --- --- 0.972856760025024 0.98732316493988 0.437421649694443 1.54281735420227 0.870360970497131 0.725830018520355 0.962401986122131 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F12.16c /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPAC6F12.16c // |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.21070928053942 1.01487002558782 -1.78229246152885 -2.22407089522113 1.58586280899419 Max fold change below threshold 0 2.22407089522113 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769877_at YIL052C.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl34Ap and has similarity to rat L34 ribosomal protein 2.22389065117748 1949.17565917969 3426.67858886719 RPL34B 6412 // protein biosynthesis // traceable author statement /// 30447 // filamentous growth // inferred from mutant phenotype 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3769.64233398438 2203.28491210938 1695.06640625 3083.71484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL052C /GEN=RPL34B /DB_XREF=GI:6322137 /SEG=NC_001141:-256224,257061 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl34Ap and has similarity to rat L34 ribosomal protein /NOTE=Rpl34bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0001314 // RPL34B SGDID:S0001314, Chr IX from 257061-257025,256552-256224, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019076 // cdna:GeneFinder chromosome:SGD1:IX:256224:257061:-1 // ensembl // 11 // --- /// YIL052C // cdna:known chromosome:SGD1:IX:256224:257061:-1 gene:YIL052C // ensembl // 11 // --- --- No cerevisiae_gene -1.05173820500825 -1.71091914316946 -1.76668530174874 -2.22389065117748 -1.22243544717651 Max fold change below threshold 4 2.22389065117748 Max fold change at or above threshold 1.17388205473928 -0.525935838098841 -1.07745677301874 0.4295105563783 2687.92712402344 921.485429983156 0.342823814584611 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776877_at YDR023W.S1 Cytosolic seryl-tRNA synthetase, class II aminoacyl-tRNA synthetase that aminoacylates tRNA(Ser), displays tRNA-dependent amino acid recognition which enhances discrimination of the serine substrate, interacts with peroxin Pex21p 2.22354541392191 2149.17358398438 1757.49877929688 SES1 6434 // seryl-tRNA aminoacylation // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 4828 // serine-tRNA ligase activity // inferred from direct assay 1581.40515136719 1980.59033203125 2317.7568359375 1933.59240722656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR023W /GEN=SES1 /DB_XREF=GI:6320226 /SEG=NC_001136:+489504,490892 /DEF=seryl-tRNA synthetase /NOTE=Ses1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: serine-tRNA ligase activity [goid GO:0004828] [evidence IDA] [pmid 3031581]; go_process: seryl-tRNA aminoacylation [goid GO:0006434] [evidence IDA] [pmid 3031581] --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 0.560000002384186 --- S0002430 // SES1 SGDID:S0002430, Chr IV from 489504-490892, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023956 // cdna:GeneFinder chromosome:SGD1:IV:489504:490892:1 // ensembl // 11 // --- /// GENSCAN00000025115 // cdna:Genscan chromosome:SGD1:IV:489504:490892:1 // ensembl // 11 // --- /// YDR023W // cdna:known chromosome:SGD1:IV:489504:490892:1 gene:YDR023W // ensembl // 11 // --- --- No cerevisiae_gene 2.22354541392191 1.25242435837454 -1.0183878417981 1.465631267189 1.22270526661362 Max fold change below threshold 4 2.22354541392191 Max fold change at or above threshold -1.23459630057712 0.0904680451719789 1.20966618815872 -0.0655379327535811 1953.33618164063 301.257204561181 0.15422701293955 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774925_at SPAC3A11.04.S1 --- 2.22297158376803 --- --- --- --- 5.11431694030762 8.83592796325684 6.79889297485352 2.86338329315186 0.24609400331974 0.149657994508743 0.0461426004767418 0.064453125 A A P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A11.04 /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC3A11.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.48529924012867 1.72768486317654 -2.22297158376803 1.3293843643653 -1.78610979275431 Max fold change below threshold 4 2.22297158376803 Max fold change at or above threshold AAAAPM No 4 0 AAPM 2 1 1 No No x = 1
1775644_at YGR220C.S1 Mitochondrial ribosomal protein of the large subunit 2.2224469367286 766.177764892578 1394.80871582031 MRPL9 27 // ribosomal large subunit assembly and maintenance // inferred from sequence similarity /// 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement 48 // peptidyltransferase activity // inferred from sequence similarity /// 3735 // structural constituent of ribosome // traceable author statement 1368.12390136719 615.593505859375 916.762023925781 1421.49353027344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR220C /GEN=MRPL9 /DB_XREF=GI:6321659 /SEG=NC_001139:-936075,936884 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl9p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: peptidyltransferase activity [goid GO:0000048] [evidence ISS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence ISS] [pmid 9445368] --- --- --- --- --- --- S0003452 // MRPL9 SGDID:S0003452, Chr VII from 936886-936077, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000019511 // cdna:Genscan chromosome:SGD1:VII:936077:936682:-1 // ensembl // 10 // --- /// GENEFINDER00000021546 // cdna:GeneFinder chromosome:SGD1:VII:936077:936886:-1 // ensembl // 10 // --- /// YGR220C // cdna:known chromosome:SGD1:VII:936077:936886:-1 gene:YGR220C // ensembl // 10 // --- YGR219W // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene -1.39981207895432 -2.2224469367286 1.2869605112427 -1.49234355880992 1.0390093535044 Max fold change below threshold 4 2.2224469367286 Max fold change at or above threshold 0.749390395364615 -1.21124568088606 -0.426583871772704 0.88843915729415 1080.49324035645 383.81951889148 0.355226210174958 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772701_at YGL186C.S1 Plasma membrane pyridoxine (vitamin B6) transporter; member of the purine-cytosine permease subfamily within the major facilitator superfamily; proton symporter with similarity to Fcy21p, Fcy2p, and Fcy22p 2.22184047080544 787.425140380859 1624.79449462891 TPN1 51180 // vitamin transport // inferred from direct assay 5886 // plasma membrane // inferred from direct assay 51183 // vitamin transporter activity // inferred from direct assay 1518.10437011719 683.264343261719 891.5859375 1731.48461914063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL186C /GEN=TPN1 /DB_XREF=GI:6321252 /SEG=NC_001139:-151041,152780 /DEF=transport of pyridoxine /NOTE=Tpn1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12649274]; go_function: vitamin/cofactor transporter activity [goid GO:0015223] [evidence IDA] [pmid 12649274]; go_process: vitamin/cofactor transport [goid GO:0015875] [evidence IDA] [pmid 12649274] --- --- --- --- --- S0003154 // span:91-113,123-145,158-180,200-219,271-293,303-325,361-383,398-415,422-441,517-539 // numtm:10 S0003154 // TPN1 SGDID:S0003154, Chr VII from 152782-151043, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019210 // cdna:Genscan chromosome:SGD1:VII:151043:152767:-1 // ensembl // 11 // --- /// YGL186C // cdna:known chromosome:SGD1:VII:151043:152782:-1 gene:YGL186C // ensembl // 11 // --- --- No cerevisiae_gene -1.17926437401128 -2.22184047080544 1.17143210715782 -1.70270111524408 1.14055703495997 Max fold change below threshold 4 2.22184047080544 Max fold change at or above threshold 0.625805767682342 -1.04873534056401 -0.630879150077577 1.05380872295925 1206.10981750488 498.54854129544 0.413352527323592 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776919_at YBL032W.S1 RNA binding protein with similarity to hnRNP-K that localizes to the cytoplasm and to subtelomeric DNA; required for the proper localization of ASH1 mRNA; involved in the regulation of telomere position effect and telomere length 2.22131654364879 596.634765625 676.218383789063 HEK2 7004 // telomerase-dependent telomere maintenance // inferred from mutant phenotype /// 7004 // telomerase-dependent telomere maintenance // inferred from physical interaction /// 8298 // intracellular mRNA localization // inferred from mutant phenotype /// 8298 // intracellular mRNA localization // inferred from physical interaction 784 // nuclear chromosome, telomeric region // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3729 // mRNA binding // inferred from direct assay 642.901184082031 517.777648925781 675.491882324219 709.535583496094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL032W /GEN=HEK2 /DB_XREF=GI:6319439 /SEG=NC_001134:+160149,161294 /DEF=RNA binding protein with similarity to hnRNP-K that localizes to the cytoplasm and to subtelomeric DNA; required for the proper localization of ASH1 mRNA; involved in the regulation of telomere position effect and telomere length /NOTE=Hek2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11867544]; go_component: nuclear chromosome, telomeric region [goid GO:0000784] [evidence IDA] [pmid 11739741]; go_function: mRNA binding [goid GO:0003729] [evidence IDA] [pmid 11867544]; go_process: mRNA localization, intracellular [goid GO:0008298] [evidence IMP,IPI] [pmid 11867544]; go_process: telomerase-dependent telomere maintenance [goid GO:0007004] [evidence IMP,IPI] [pmid 11739741] --- --- --- --- --- --- S0000128 // HEK2 SGDID:S0000128, Chr II from 160187-161332, Verified ORF // sgd // 11 // --- /// GENSCAN00000021113 // cdna:Genscan chromosome:SGD1:II:160187:161332:1 // ensembl // 11 // --- /// GENEFINDER00000022355 // cdna:GeneFinder chromosome:SGD1:II:160187:161332:1 // ensembl // 11 // --- /// YBL032W // cdna:known chromosome:SGD1:II:160187:161332:1 gene:YBL032W // ensembl // 11 // --- --- No cerevisiae_gene 2.22131654364879 -1.24165495636175 -1.12339847114126 1.05069316879346 1.10364640953214 Max fold change below threshold 4 2.22131654364879 Max fold change at or above threshold 0.0774038685563986 -1.41844632218137 0.467025230524592 0.87401722310038 636.426574707031 83.6471031196899 0.131432448681445 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Sc18SrRNA-M_at AFFX-r2-Sc18SrRNA-M --- 2.22083788965131 493.830474853516 476.778839111328 --- --- --- --- 600.07666015625 717.458129882813 270.202819824219 353.481018066406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=Z75578 SGD:YLR154C 18S ribosomal RNA corresponds to 1-1799 in Z75578 (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- D83552 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:465250-465418(-) /// L10741 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 18S ribosomal RNA, partial. // gb // 0 // chr12:465251-465539(-) /// D23705 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:465250-465418(-) /// L22158 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA (18S rRNA) fragment. // gb // 0 // chr12:465277-465545(-) /// L19742 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA fragment. // gb // 0 // chr12:465277-465547(-) /// D83552 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:456113-456281(-) /// L10741 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 18S ribosomal RNA, partial. // gb // 0 // chr12:456114-456402(-) /// D23705 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:456113-456281(-) /// L22158 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA (18S rRNA) fragment. // gb // 0 // chr12:456140-456408(-) /// L19742 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA fragment. // gb // 0 // chr12:456140-456410(-) --- AFFX_control cerevisiae_gene -1.59283858562909 1.19561079028802 -1.1267904842469 -2.22083788965131 -1.69762060616086 Max fold change below threshold 4 2.22083788965131 Max fold change at or above threshold 0.549838742422912 1.11217866778307 -1.03048932113519 -0.631528089070787 485.304656982422 208.737570343034 0.430116561503747 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 No No 3 < x
1777889_at YPL008W.S1 Conserved nuclear protein required to establish sister-chromatid pairing during S-phase, probable DNA helicase with similarity to human BACH1, which associates with tumor suppressor BRCA1; associates with acetyltransferase Ctf7p 2.22068045795729 301.459121704102 593.325286865234 CHL1 7059 // chromosome segregation // inferred from direct assay /// 7064 // mitotic sister chromatid cohesion // inferred from mutant phenotype /// 7064 // mitotic sister chromatid cohesion // inferred from genetic interaction 5634 // nucleus // inferred from direct assay 3678 // DNA helicase activity // inferred from sequence similarity /// 3678 // DNA helicase activity // inferred from mutant phenotype 531.447570800781 306.801361083984 296.116882324219 655.203002929688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL008W /GEN=CHL1 /DB_XREF=GI:6325249 /SEG=NC_001148:+539380,541965 /DEF=Required for mitotic chromosome segregation, needed for wild-type levels of meiotic recombination and spore viability /NOTE=Chl1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 15020404]; go_function: DNA helicase activity [goid GO:0003678] [evidence IMP,ISS] [pmid 10931920]; go_process: chromosome segregation [goid GO:0007059] [evidence IDA] [pmid 10931920]; go_process: mitotic sister chromatid cohesion [goid GO:0007064] [evidence IMP] [pmid 15020404] --- --- --- --- --- --- S0005929 // CHL1 SGDID:S0005929, Chr XVI from 539382-541967, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021016 // cdna:GeneFinder chromosome:SGD1:XVI:539550:541967:1 // ensembl // 11 // --- /// GENSCAN00000017177 // cdna:Genscan chromosome:SGD1:XVI:541137:541967:1 // ensembl // 11 // --- /// YPL008W // cdna:known chromosome:SGD1:XVI:539382:541967:1 gene:YPL008W // ensembl // 11 // --- --- No cerevisiae_gene -2.22068045795729 -1.73222038169284 -1.19398130229825 -1.79472229556604 1.23286479970627 Max fold change below threshold 4 2.22068045795729 Max fold change at or above threshold 0.477657628949156 -0.79892922485 -0.859645428972065 1.18091702487291 447.392204284668 175.974089853929 0.393332937339157 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776874_at YMR167W.S1 Protein required for mismatch repair in mitosis and meiosis, postmeiotic segregation, and spore viability; forms a complex with Pms1p and Msh2p to repair mismatched DNA; human homolog is associated with hereditary non-polyposis colon cancer 2.21957189654439 261.142150878906 201.544342041016 MLH1 7131 // meiotic recombination // traceable author statement 5634 // nucleus // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from direct assay 3677 // DNA binding // inferred from direct assay /// 5524 // ATP binding // inferred from sequence similarity /// 16887 // ATPase activity // inferred from sequence similarity 168.941696166992 256.067901611328 266.216400146484 234.146987915039 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR167W /GEN=MLH1 /DB_XREF=GI:6323819 /SEG=NC_001145:+594885,597194 /DEF=Required for mismatch repair in mitosis and meiosis, low levels of postmeiotic segregation, and high spore viability /NOTE=Mlh1p; go_component: nucleus [goid GO:0005634] [evidence IMP] [pmid 11689704]; go_function: ATP binding [goid GO:0005524] [evidence ISS] [pmid 10082584]; go_function: ATPase activity [goid GO:0016887] [evidence ISS] [pmid 10082584]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 11575920]; go_process: meiotic recombination [goid GO:0007131] [evidence TAS] [pmid 11901110] --- --- --- --- --- --- S0004777 // MLH1 SGDID:S0004777, Chr XIII from 594885-597194, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021882 // cdna:GeneFinder chromosome:SGD1:XIII:594885:597194:1 // ensembl // 11 // --- /// GENSCAN00000018853 // cdna:Genscan chromosome:SGD1:XIII:594981:597194:1 // ensembl // 11 // --- /// YMR167W // cdna:known chromosome:SGD1:XIII:594885:597194:1 gene:YMR167W // ensembl // 11 // --- --- No cerevisiae_gene -1.05365354478928 1.51571759619493 2.21957189654439 1.57578860746929 1.38596328335424 Max fold change below threshold 4 2.21957189654439 Max fold change at or above threshold -1.42792943483944 0.565772207439369 0.797999447143178 0.0641577802568908 231.343246459961 43.7007241187555 0.188899934566791 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774444_at YPL149W.S1 Conserved autophagy-related protein that undergoes conjugation with Atg12p and then associates with Atg16p to form a cytosolic complex essential for autophagosome formation 2.21882473433313 1741.35876464844 900.633697509766 ATG5 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6914 // autophagy // inferred from mutant phenotype 5776 // autophagic vacuole // inferred from direct assay /// 5829 // cytosol // inferred from direct assay --- 807.736877441406 1792.2265625 1690.49096679688 993.530517578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL149W /GEN=ATG5 /DB_XREF=GI:6325108 /SEG=NC_001148:+271309,272193 /DEF=Involved in autophagy /NOTE=Atg5p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 11897782]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: autophagy [goid GO:0006914] [evidence IMP] [pmid 8921905]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 10712513] --- --- --- --- --- --- S0006070 // ATG5 SGDID:S0006070, Chr XVI from 271309-272193, Verified ORF // sgd // 11 // --- /// GENSCAN00000017075 // cdna:Genscan chromosome:SGD1:XVI:271309:272193:1 // ensembl // 11 // --- /// YPL149W // cdna:known chromosome:SGD1:XVI:271309:272193:1 gene:YPL149W // ensembl // 11 // --- --- No cerevisiae_gene -1.05899848887816 2.21882473433313 1.5490829994134 2.09287332794769 1.23001752838776 Max fold change below threshold 4 2.21882473433313 Max fold change at or above threshold -1.04101811262656 0.955772762349802 0.749427574336792 -0.66418222406003 1320.9962310791 493.035949530892 0.373230398339698 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778574_at YGL145W.S1 Peripheral membrane protein required for fusion of COPI vesicles with the ER, prohibits back-fusion of COPII vesicles with the ER, may act as a sensor for vesicles at the ER membrane 2.21861200430309 494.820465087891 629.807403564453 TIP20 6890 // retrograde transport, Golgi to ER // inferred from genetic interaction 5783 // endoplasmic reticulum // inferred from direct assay --- 578.027587890625 540.679809570313 448.961120605469 681.587219238281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL145W /GEN=TIP20 /DB_XREF=GI:14318435 /SEG=NC_001139:+230246,232351 /DEF=transport protein that interacts with Sec20p; required for protein transport from the endoplasmic reticulum to the golgi apparatus /NOTE=Tip20p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11739780]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: retrograde transport, Golgi to ER [goid GO:0006890] [evidence IGI] [pmid 9639310] --- --- --- --- scop // a.4.3.ARID domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; ARID-like; ARID domain // 8.80000019073486 --- S0003113 // TIP20 SGDID:S0003113, Chr VII from 230248-232353, Verified ORF // sgd // 11 // --- /// GENSCAN00000019240 // cdna:Genscan chromosome:SGD1:VII:230248:232353:1 // ensembl // 11 // --- /// GENEFINDER00000021636 // cdna:GeneFinder chromosome:SGD1:VII:230248:232353:1 // ensembl // 11 // --- /// YGL145W // cdna:known chromosome:SGD1:VII:230248:232353:1 gene:YGL145W // ensembl // 11 // --- --- No cerevisiae_gene 2.21861200430309 -1.06907559272464 1.05956155619127 -1.28747804957164 1.17916036105746 Max fold change below threshold 4 2.21861200430309 Max fold change at or above threshold 0.163265365982815 -0.224779252100444 -1.17773938068467 1.2392532668023 562.313934326172 96.2460927941517 0.171160782116283 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778950_at YMR013C.S1 Dolichol kinase, catalyzes the terminal step in dolichyl monophosphate (Dol-P) biosynthesis; required for viability and for normal rates of lipid intermediate synthesis and protein N-glycosylation 2.21771109935749 212.965240478516 200.775550842285 SEC59 6486 // protein amino acid glycosylation // inferred from mutant phenotype /// 45047 // protein-ER targeting // inferred from mutant phenotype 5789 // endoplasmic reticulum membrane // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // inferred from mutant phenotype 4168 // dolichol kinase activity // inferred from mutant phenotype 186.193572998047 229.05500793457 196.875473022461 215.357528686523 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR013C /GEN=SEC59 /DB_XREF=GI:6323655 /SEG=NC_001145:-295178,296737 /DEF=catalyzes the CTP-mediated phosphorylation of dolichol, the terminal step in dolichyl monophosphate (Dol-P) biosynthesis. required for viability, normal rates of lipid intermediate synthesis, protein N-glycosylation. /NOTE=Sec59p; go_component: membrane [goid GO:0016020] [evidence IDA] [pmid 2657387]; go_function: dolichol kinase activity [goid GO:0004168] [evidence IMP] [pmid 2657387]; go_process: protein amino acid glycosylation [goid GO:0006486] [evidence IMP] [pmid 2657387]; go_process: protein-ER targeting [goid GO:0045047] [evidence IMP] [pmid 6368572] --- --- --- --- --- S0004615 // span:87-109,124-146,158-175,227-249,301-318,333-355,395-414,453-470 // numtm:8 S0004615 // SEC59 SGDID:S0004615, Chr XIII from 296737-295178, reverse complement, Verified ORF // sgd // 11 // --- /// YMR013C // cdna:known chromosome:SGD1:XIII:295178:296737:-1 gene:YMR013C // ensembl // 11 // --- --- No cerevisiae_gene 2.21771109935749 1.23019825145615 -1.11823083495102 1.05736986434288 1.15663245094278 Max fold change below threshold 4 2.21771109935749 Max fold change at or above threshold -1.08394963030092 1.16299310903015 -0.523967965252528 0.44492448652329 206.8703956604 19.0754460210604 0.0922096463351614 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775012_at YGL216W.S1 Kinesin-related motor protein involved in mitotic spindle positioning 2.21743895203524 401.399276733398 878.220245361328 KIP3 132 // establishment of mitotic spindle orientation // inferred from mutant phenotype /// 132 // establishment of mitotic spindle orientation // inferred from genetic interaction /// 7019 // microtubule depolymerization // inferred from mutant phenotype /// 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from mutant phenotype /// 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from genetic interaction /// 30473 // nuclear migration, microtubule-mediated // inferred from mutant phenotype /// 51228 // mitotic spindle disassembly // inferred from mutant phenotype 5871 // kinesin complex // traceable author statement /// 5880 // nuclear microtubule // inferred from direct assay /// 5881 // cytoplasmic microtubule // inferred from direct assay 3777 // microtubule motor activity // traceable author statement 874.925903320313 408.232604980469 394.565948486328 881.514587402344 0.000732421991415322 0.00195312988944352 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL216W /GEN=KIP3 /DB_XREF=GI:6321221 /SEG=NC_001139:+84883,87300 /DEF=Kinesin-related protein /NOTE=Kip3p; go_component: cytoplasmic microtubule [goid GO:0005881] [evidence IDA] [pmid 9693366]; go_component: kinesin complex [goid GO:0005871] [evidence TAS] [pmid 9153752]; go_component: nuclear microtubule [goid GO:0005880] [evidence IDA] [pmid 9693366]; go_function: microtubule motor activity [goid GO:0003777] [evidence TAS] [pmid 9153752]; go_process: microtubule depolymerization [goid GO:0007019] [evidence IMP] [pmid 9693366]; go_process: mitotic spindle assembly (sensu Fungi) [goid GO:0030472] [evidence IGI,IMP] [pmid 10525539]; go_process: mitotic spindle orientation (sensu Fungi) [goid GO:0030607] [evidence IGI,IMP] [pmid 9281582]; go_process: nuclear migration (sensu Saccharomyces) [goid GO:0000065] [evidence IMP] [pmid 9693366] --- --- --- --- --- --- S0003184 // KIP3 SGDID:S0003184, Chr VII from 84884-87301, Verified ORF // sgd // 11 // --- /// GENSCAN00000019186 // cdna:Genscan chromosome:SGD1:VII:84884:87301:1 // ensembl // 11 // --- /// GENEFINDER00000021680 // cdna:GeneFinder chromosome:SGD1:VII:85034:87301:1 // ensembl // 11 // --- /// YGL216W // cdna:known chromosome:SGD1:VII:84884:87301:1 gene:YGL216W // ensembl // 11 // --- --- No cerevisiae_gene -1.44995267227182 -2.14320437085659 -1.20496920410827 -2.21743895203524 1.00753056236766 Max fold change below threshold 4 2.21743895203524 Max fold change at or above threshold 0.853842625378431 -0.840990520694578 -0.890622050662245 0.877769945978391 639.809761047363 275.362385625505 0.430381657783306 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777710_at YDR179C.S1 Subunit of the Cop9 signalosome, which is required for deneddylation, or removal of the ubiquitin-like protein Rub1p from Cdc53p (cullin); involved in adaptation to pheromone signaling 2.21697577380781 146.049690246582 269.537811279297 CSN9 338 // protein deneddylation // inferred from mutant phenotype /// 754 // adaptation to pheromone during conjugation with cellular fusion // inferred from mutant phenotype /// 754 // adaptation to pheromone during conjugation with cellular fusion // inferred from genetic interaction 8180 // signalosome complex // traceable author statement /// 8180 // signalosome complex // inferred from direct assay --- 253.723297119141 177.653701782227 114.445678710938 285.352325439453 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR179C /GEN=CSN9 /DB_XREF=GI:6320384 /SEG=NC_001136:-818702,819190 /DEF=Subunit of the Cop9 signalosome, which is required for deneddylation, or removal of the ubiquitin-like protein Rub1p from Cdc53p (cullin); involved in adaptation to pheromone signaling /NOTE=Csn9p; go_component: signalosome complex [goid GO:0008180] [evidence TAS] [pmid 12186635]; go_component: signalosome complex [goid GO:0008180] [evidence IDA] [pmid 12446563]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: adaptation to pheromone during conjugation with cellular fusion [goid GO:0000754] [evidence IGI,IMP] [pmid 12446563]; go_process: protein deneddylation [goid GO:0000338] [evidence IMP] [pmid 12446563] --- --- --- --- --- --- S0002586 // CSN9 SGDID:S0002586, Chr IV from 819191-818703, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025234 // cdna:Genscan chromosome:SGD1:IV:818703:819185:-1 // ensembl // 11 // --- /// YDR179C // cdna:known chromosome:SGD1:IV:818703:819191:-1 gene:YDR179C // ensembl // 11 // --- --- No cerevisiae_gene 1.0228616653466 -1.42819031955868 -1.13097849441741 -2.21697577380781 1.12465953532624 Max fold change below threshold 4 2.21697577380781 Max fold change at or above threshold 0.59715707944397 -0.39186852585124 -1.21367325612117 1.00838470252844 207.793750762939 76.9136763797014 0.370144319053406 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779119_at YLR412C-A.S1 Identified by fungal homology and RT-PCR 2.21685287249711 51.2485618591309 34.0395526885986 --- --- --- --- 33.2232246398926 73.6510009765625 28.8461227416992 34.8558807373047 0.00585938012227416 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR412C-A /GEN=CTR3 /DB_XREF=GI:33438848 /SEG=NC_001144:-950263,950469 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ylr412c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028572 // YLR412C-A SGDID:S0028572, Chr XII from 950469-950263, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// YLR412C-A // cdna:known chromosome:SGD1:XII:950263:950469:-1 gene:YLR412C-A // ensembl // 10 // --- --- No cerevisiae_gene 1.39953663160479 2.21685287249711 -1.31330196273694 -1.15173969608976 1.04914201180375 Max fold change below threshold 4 2.21685287249711 Max fold change at or above threshold -0.452349722060798 1.4888261909347 -0.662520192549744 -0.373956276324161 42.6440572738647 20.8264362163264 0.488378394264335 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1773065_at YDR319C.S1 Hypothetical protein 2.21553427875194 1077.41162109375 515.414474487305 --- --- --- --- 496.644927978516 1100.33386230469 1054.48937988281 534.184020996094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR319C /GEN=MCM21 /DB_XREF=GI:6320525 /SEG=NC_001136:-1104996,1105820 /DEF=Hypothetical ORF /NOTE=Ydr319cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002727 // span:13-35,50-72,125-147,175-197,217-236,246-268 // numtm:6 S0002727 // YDR319C SGDID:S0002727, Chr IV from 1105822-1104998, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDR319C // cdna:known chromosome:SGD1:IV:1104998:1105822:-1 gene:YDR319C // ensembl // 11 // --- --- No cerevisiae_gene 1.15395880597965 2.21553427875194 1.20501932492449 2.12322591146733 1.07558537478752 Max fold change below threshold 4 2.21553427875194 Max fold change at or above threshold -0.92131553308969 0.934078538494228 0.793178853136698 -0.805941858541235 796.413047790527 325.369657892036 0.408543856475861 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778303_at YFR032C-A.S1 Protein component of the large (60S) ribosomal subunit, has similarity to rat L29 ribosomal protein; not essential for translation, but required for proper joining of the large and small ribosomal subunits and for normal translation rate 2.21514181441871 2439.80419921875 4766.34106445313 RPL29 6412 // protein biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 5006.4287109375 2619.51440429688 2260.09399414063 4526.25341796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR032C-A /GEN=RPL29 /DB_XREF=GI:14318557 /SEG=NC_001138:-223246,223425 /DEF=Protein component of the large (60S) ribosomal subunit, has similarity to rat L29 ribosomal protein; not essential for translation, but required for proper joining of the large and small ribosomal subunits and for normal translation rate /NOTE=Rpl29p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0006437 // RPL29 SGDID:S0006437, Chr VI from 223425-223246, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018510 // cdna:GeneFinder chromosome:SGD1:VI:223246:223425:-1 // ensembl // 11 // --- /// YFR032C-A // cdna:known chromosome:SGD1:VI:223246:223425:-1 gene:YFR032C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.080473094847 -1.91120487931858 -2.15169780016438 -2.21514181441871 -1.10608670099259 Max fold change below threshold 4 2.21514181441871 Max fold change at or above threshold 1.02782625729959 -0.720363838445686 -0.983605463625011 0.676143044771111 3603.07263183594 1365.36313324842 0.378944104868823 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771632_at YDR273W.S1 Meiosis-specific component of the spindle pole body, part of the leading edge protein (LEP) coat, forms a ring-like structure at the leading edge of the prospore membrane during meiosis II 2.21498022593419 451.420822143555 866.315368652344 DON1 7126 // meiosis // inferred from expression pattern /// 30476 // spore wall assembly (sensu Fungi) // inferred from physical interaction 5628 // prospore membrane // inferred from direct assay /// 5819 // spindle // inferred from direct assay --- 819.631774902344 463.246063232422 439.595581054688 912.998962402344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR273W /GEN=DON1 /DB_XREF=GI:6320479 /SEG=NC_001136:+1010168,1011265 /DEF=Meiosis-specific component of the spindle pole body, part of the leading edge protein (LEP) coat, forms a ring-like structure at the leading edge of the prospore membrane during meiosis II /NOTE=Don1p; go_component: prospore membrane [goid GO:0005628] [evidence IDA] [pmid 11973299]; go_component: spindle [goid GO:0005819] [evidence IDA] [pmid 11973299]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiosis [goid GO:0007126] [evidence IEP] [pmid 10899120]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence IPI] [pmid 11973299] --- --- --- --- --- --- S0002681 // DON1 SGDID:S0002681, Chr IV from 1010170-1011267, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023498 // cdna:GeneFinder chromosome:SGD1:IV:1010170:1011267:1 // ensembl // 11 // --- /// YDR273W // cdna:known chromosome:SGD1:IV:1010170:1011267:1 gene:YDR273W // ensembl // 11 // --- --- No cerevisiae_gene -2.21498022593419 -1.76932269900611 -1.37542097077415 -1.86451322585151 1.11391357724159 Max fold change below threshold 4 2.21498022593419 Max fold change at or above threshold 0.662273029848425 -0.805873542747747 -0.903302741541348 1.04690325444067 658.868095397949 242.745321429122 0.36842779780148 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779524_at YOL156W.S1 Putative hexose transporter that is nearly identical to Hxt9p, has similarity to major facilitator superfamily (MFS) transporters and is involved in pleiotropic drug resistance /// Putative hexose transporter that is nearly identical to Hxt11p, has similarity to major facilitator superfamily (MFS) transporters, expression of HXT9 is regulated by transcription factors Pdr1p and Pdr3p /// Protein of unknown function with similarity to hexose transporter family members, possible pseudogene /// Protein of unknown function with similarity to hexose transporter family members, possible pseudogene 2.21465077376705 19.5238342285156 14.8172793388367 HXT11 /// HXT9 /// HXT12 8645 // hexose transport // inferred from genetic interaction 5886 // plasma membrane // inferred from sequence similarity 5353 // fructose transporter activity // inferred from genetic interaction /// 5354 // galactose transporter activity // inferred from genetic interaction /// 5355 // glucose transporter activity // inferred from genetic interaction /// 15578 // mannose transporter activity // inferred from genetic interaction /// 15149 // hexose transporter activity // inferred from genetic interaction 12.2578496932983 27.1468563079834 11.9008121490479 17.376708984375 0.030273400247097 0.00292969006113708 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL156W /GEN=HXT11 /DB_XREF=GI:6324417 /SEG=NC_001147:+25272,26975 /DEF=Putative hexose transporter that is nearly identical to Hxt9p, has similarity to major facilitator superfamily (MFS) transporters and is involved in pleiotropic drug resistance /NOTE=Hxt11p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 8929273]; go_function: fructose transporter activity [goid GO:0005353] [evidence IGI] [pmid 10618490]; go_function: galactose transporter activity [goid GO:0005354] [evidence IGI] [pmid 10618490]; go_function: glucose transporter activity [goid GO:0005355] [evidence IGI] [pmid 10618490]; go_function: mannose transporter activity [goid GO:0015578] [evidence IGI] [pmid 10618490]; go_process: hexose transport [goid GO:0008645] [evidence IGI] [pmid 10618490] --- --- --- --- --- S0001432 // span:2-19,29-51,56-78,88-110,123-142,245-267,274-296,318-340,352-374,378-400 // numtm:10 /// S0001433 // span:55-77 // numtm:1 /// S0003755 // span:55-77,111-130,140-159,166-188,198-220,233-252,355-377,384-406,428-450,462-484,488-510 // numtm:11 /// S0005516 // span:55-77,111-130,140-159,166-188,198-220,233-252,355-377,384-406,428-450,462-484,488-510 // numtm:11 S0001432 // HXT12 SGDID:S0001432, Chr IX from 19847-21220, Pseudogene ORF // sgd // 11 // --- /// S0005516 // HXT11 SGDID:S0005516, Chr XV from 25272-26975, Verified ORF // sgd // 11 // --- /// GENSCAN00000016346 // cdna:Genscan chromosome:SGD1:IX:19847:21220:1 // ensembl // 11 // --- /// GENEFINDER00000019019 // cdna:GeneFinder chromosome:SGD1:IX:19847:21220:1 // ensembl // 11 // --- /// GENSCAN00000017345 // cdna:Genscan chromosome:SGD1:XV:25317:26975:1 // ensembl // 11 // --- /// GENEFINDER00000022570 // cdna:GeneFinder chromosome:SGD1:XV:25317:26975:1 // ensembl // 11 // --- /// YIL170W // cdna:pseudogene chromosome:SGD1:IX:19847:21220:1 gene:YIL170W // ensembl // 11 // --- /// YOL156W // cdna:known chromosome:SGD1:XV:25272:26975:1 gene:YOL156W // ensembl // 11 // --- --- No cerevisiae_gene -1.10567345864019 2.21465077376705 1.41950257548906 -1.03000110746888 1.41759847111482 Max fold change below threshold 4 2.21465077376705 Max fold change at or above threshold -0.691373170838187 1.40398067877101 -0.741619638729631 0.0290121307968057 17.1705567836761 7.10572422765825 0.413831905230562 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1779329_at YDR517W.S1 Golgi localized protein component of the spindle assembly checkpoint; homolog of human GRASP65, which functions in postmitotic reassembly of Golgi stacks 2.2146290680619 2326.41345214844 1137.98956298828 GRH1 7094 // mitotic spindle checkpoint // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 1094.47888183594 2228.96215820313 2423.86474609375 1181.50024414063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR517W /GEN=EMI2 /DB_XREF=GI:6320725 /SEG=NC_001136:+1477227,1478345 /DEF=Golgi localized protein component of the spindle assembly checkpoint; homolog of human GRASP65, which functions in postmitotic reassembly of Golgi stacks /NOTE=Ydr517wp --- --- --- --- --- --- S0002925 // GRH1 SGDID:S0002925, Chr IV from 1477229-1478347, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023716 // cdna:GeneFinder chromosome:SGD1:IV:1477229:1478347:1 // ensembl // 11 // --- /// GENSCAN00000025503 // cdna:Genscan chromosome:SGD1:IV:1477229:1478347:1 // ensembl // 11 // --- /// YDR517W // cdna:known chromosome:SGD1:IV:1477229:1478347:1 gene:YDR517W // ensembl // 11 // --- --- No cerevisiae_gene 1.41823557091586 2.03655108855471 1.20140361819149 2.2146290680619 1.07950940282988 Max fold change below threshold 4 2.2146290680619 Max fold change at or above threshold -0.922033389852137 0.718227467817816 1.00002191347882 -0.796215991444498 1732.20150756836 691.648082109793 0.399288465624718 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-Scv2-r2-Ec-bioC-5_at AFFX-Scv2-r2-Ec-bioC-5 --- 2.21430736201074 --- --- --- --- 769.917602539063 973.650146484375 347.701324462891 373.810974121094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4257-4573 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --- --- --- --- --- --- AFFX-Scv2-r2-Ec-bioC-5 // --- // affx // --- // --- --- AFFX_control No -1.59317033549984 1.26461603588934 -1.68711981781616 -2.21430736201074 -2.05964419409916 Max fold change below threshold 4 2.21430736201074 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775692_at YDL019C.S1 Member of an oxysterol-binding protein family with seven members in S. cerevisiae; family members have overlapping, redundant functions in sterol metabolism and collectively perform a function essential for viability 2.21377138107835 1865.45928955078 2232.42590332031 OSH2 6694 // steroid biosynthesis // inferred from mutant phenotype /// 6694 // steroid biosynthesis // inferred from genetic interaction 5886 // plasma membrane // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 8142 // oxysterol binding // inferred from sequence similarity 2314.693359375 1838.91735839844 1892.00122070313 2150.15844726563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL019C /GEN=OSH2 /DB_XREF=GI:6320185 /SEG=NC_001136:-417660,421511 /DEF=Member of an oxysterol-binding protein family with seven members in S. cerevisiae; family members have overlapping, redundant functions in sterol metabolism and collectively perform a function essential for viability /NOTE=Osh2p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 11408574]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 11408574]; go_function: oxysterol binding [goid GO:0008142] [evidence ISS] [pmid 11238399]; go_process: steroid biosynthesis [goid GO:0006694] [evidence IGI,IMP] [pmid 11238399] --- --- --- --- --- --- S0002177 // OSH2 SGDID:S0002177, Chr IV from 421511-417660, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023409 // cdna:GeneFinder chromosome:SGD1:IV:417660:421511:-1 // ensembl // 11 // --- /// GENSCAN00000025086 // cdna:Genscan chromosome:SGD1:IV:417660:421511:-1 // ensembl // 11 // --- /// YDL019C // cdna:known chromosome:SGD1:IV:417660:421511:-1 gene:YDL019C // ensembl // 11 // --- --- No cerevisiae_gene -2.21377138107835 -1.25872614601394 -1.29716027317166 -1.22341007714297 -1.07652222668456 Max fold change below threshold 4 2.21377138107835 Max fold change at or above threshold 1.1900243112228 -0.940487005455785 -0.702778989202321 0.453241683435303 2048.94259643555 223.315406612477 0.108990562742445 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774719_at YGL029W.S1 Protein involved in nucleolar integrity and processing of the pre-rRNA for the 60S ribosome subunit; transcript is induced in response to cytotoxic stress but not genotoxic stress 2.21367711679252 60.0311832427979 122.386737823486 CGR1 6364 // rRNA processing // inferred from direct assay /// 7046 // ribosome biogenesis // inferred from mutant phenotype 5730 // nucleolus // inferred from direct assay --- 122.15567779541 64.8801193237305 55.1822471618652 122.617797851563 0.00195312988944352 0.000732421991415322 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL029W /GEN=CGR1 /DB_XREF=GI:6321409 /SEG=NC_001139:+440066,440428 /DEF=Coiled-coil growth-regulated. May contribute to compartmentalization of nucleolar constituents. /NOTE=Cgr1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11116400]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: rRNA processing [goid GO:0006364] [evidence IDA] [pmid 11932453]; go_process: ribosome biogenesis [goid GO:0007046] [evidence IMP] [pmid 11116400] --- --- --- --- --- --- S0002997 // CGR1 SGDID:S0002997, Chr VII from 440068-440430, Verified ORF // sgd // 10 // --- /// GENEFINDER00000021577 // cdna:GeneFinder chromosome:SGD1:VII:440068:440430:1 // ensembl // 10 // --- /// YGL029W // cdna:known chromosome:SGD1:VII:440068:440430:1 gene:YGL029W // ensembl // 10 // --- --- No cerevisiae_gene 1.67563220945053 -1.88279058467654 -1.06494278469374 -2.21367711679252 1.00378304197146 Max fold change below threshold 4 2.21367711679252 Max fold change at or above threshold 0.854444257650956 -0.726943894931777 -0.994703835668429 0.86720347294925 91.2089605331421 36.218532672157 0.397094018618888 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777081_at YOL159C.S1 Hypothetical protein 2.21367518912905 420.258743286133 350.347930908203 --- --- 5625 // soluble fraction // inferred from direct assay --- 318.787902832031 403.279205322266 437.23828125 381.907958984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL159C /GEN=AAD15 /DB_XREF=GI:6324414 /SEG=NC_001147:-17280,17795 /DEF=Hypothetical ORF /NOTE=Yol159cp; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 11935221]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005519 // YOL159C SGDID:S0005519, Chr XV from 17795-17280, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YOL159C // cdna:known chromosome:SGD1:XV:17280:17795:-1 gene:YOL159C // ensembl // 11 // --- --- No cerevisiae_gene 2.21367518912905 1.26503923687077 1.46892516802058 1.37156484724071 1.19800016120938 Max fold change below threshold 4 2.21367518912905 Max fold change at or above threshold -1.33421011843317 0.360571731035323 1.04174510404255 -0.0681067166447009 385.303337097168 49.8537924020912 0.129388426214224 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779259_at SPAC13G7.05.S1 --- 2.21280357424856 --- --- --- --- 10.7639942169189 17.6564159393311 14.6516971588135 4.86441469192505 0.194580003619194 0.171387001872063 0.129638999700546 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G7.05 /DEF=acyl-coA-sterol acyltransferase (predicted) --- --- --- --- --- --- SPAC13G7.05 // |||acyl-coA-sterol acyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.12252885570912 1.6403219458794 -1.04266072957926 1.36117661005278 -2.21280357424856 Max fold change below threshold 4 2.21280357424856 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775283_at YGL016W.S1 Karyopherin beta, responsible for import of the Toa1p-Toa2p complex into the nucleus; binds to nucleoporins Nup1p and Nup2p; may play a role in regulation of pleiotropic drug resistance 2.21270602419585 75.0123710632324 56.2222595214844 KAP122 6606 // protein-nucleus import // inferred from direct assay /// 42493 // response to drug // traceable author statement 5643 // nuclear pore // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8320 // protein carrier activity // traceable author statement 49.5352478027344 76.8014068603516 73.2233352661133 62.9092712402344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL016W /GEN=KAP122 /DB_XREF=GI:6321422 /SEG=NC_001139:+461669,464914 /DEF=Karyopherin beta, responsible for import of the Toa1p-Toa2p complex into the nucleus; binds to nucleoporins Nup1p and Nup2p; may play a role in regulation of pleiotropic drug resistance /NOTE=Kap122p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10684247]; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 10684247]; go_function: protein carrier activity [goid GO:0008320] [evidence TAS] [pmid 10525531]; go_process: protein-nucleus import [goid GO:0006606] [evidence IDA] [pmid 10525531]; go_process: response to drug [goid GO:0042493] [evidence TAS] [pmid 1882553] --- --- --- --- --- --- S0002984 // KAP122 SGDID:S0002984, Chr VII from 461671-464916, Verified ORF // sgd // 11 // --- /// GENSCAN00000019329 // cdna:Genscan chromosome:SGD1:VII:461671:464916:1 // ensembl // 11 // --- /// GENEFINDER00000021648 // cdna:GeneFinder chromosome:SGD1:VII:462901:464916:1 // ensembl // 11 // --- /// YGL016W // cdna:known chromosome:SGD1:VII:461671:464916:1 gene:YGL016W // ensembl // 11 // --- --- No cerevisiae_gene 2.21270602419585 1.55043954087401 -1.0466840080002 1.47820670157365 1.26999003801818 Max fold change below threshold 4 2.21270602419585 Max fold change at or above threshold -1.31470045811148 0.91429353330895 0.621788084793965 -0.221381159991436 65.6173152923584 12.2324955394975 0.186421762075994 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769649_at YML017W.S1 Asn rich cytoplasmic protein that contains RGG motifs; high-copy suppressor of group II intron-splicing defects of a mutation in MRS2 and of a conditional mutation in POL1 (DNA polymerase alpha); possible role in mitochondrial mRNA splicing 2.21148538018503 51.4417896270752 21.7895927429199 PSP2 --- 5737 // cytoplasm // inferred from direct assay --- 24.2524013519287 49.2497482299805 53.6338310241699 19.3267841339111 0.014160200022161 0.00805663969367743 0.00585938012227416 0.00805663969367743 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML017W /GEN=PSP2 /DB_XREF=GI:41629688 /SEG=NC_001145:+236588,238731 /DEF=Polymerase suppressor 2; Suppressors of group II intron-splicing defect. /NOTE=Psp2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004479 // PSP2 SGDID:S0004479, Chr XIII from 236588-236591,236954-238731, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000018702 // cdna:Genscan chromosome:SGD1:XIII:236995:238731:1 // ensembl // 11 // --- /// GENEFINDER00000021901 // cdna:GeneFinder chromosome:SGD1:XIII:236995:238731:1 // ensembl // 11 // --- /// YML017W // cdna:known chromosome:SGD1:XIII:236588:238731:1 gene:YML017W // ensembl // 11 // --- --- No cerevisiae_gene 1.35253270425111 2.03071636145688 1.35975254267653 2.21148538018503 -1.25485963851456 Max fold change below threshold 4 2.21148538018503 Max fold change at or above threshold -0.713401133593755 0.729025262650637 0.982000779472869 -0.997624908529751 36.6156911849976 17.3300675466954 0.473296201323547 PPPPPP Called_P_>2EXP 4 0 PPPP 0 4 0 Yes Yes 3 < x
1769764_at YOR223W.S1 Hypothetical protein 2.21083021499386 982.94482421875 637.463287353516 --- --- --- --- 611.019104003906 615.030151367188 1350.85949707031 663.907470703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR223W /GEN=ODC2 /DB_XREF=GI:6324797 /SEG=NC_001147:+759782,760660 /DEF=Hypothetical ORF /NOTE=Yor223wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005749 // span:244-261,274-291 // numtm:2 S0005749 // YOR223W SGDID:S0005749, Chr XV from 759782-760660, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017639 // cdna:Genscan chromosome:SGD1:XV:759782:760660:1 // ensembl // 11 // --- /// GENEFINDER00000022762 // cdna:GeneFinder chromosome:SGD1:XV:759782:760660:1 // ensembl // 11 // --- /// YOR223W // cdna:known chromosome:SGD1:XV:759782:760660:1 gene:YOR223W // ensembl // 11 // --- --- No cerevisiae_gene 1.38911412588052 1.00656452038406 1.33389631759744 2.21083021499386 1.08655763191797 Max fold change below threshold 4 2.21083021499386 Max fold change at or above threshold -0.551395474245323 -0.540291857514703 1.49667412514245 -0.404986793382422 810.204055786133 361.237915590157 0.445860413818407 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769813_at YOR329C.S1 Protein required for normal cortical actin organization and endocytosis; multicopy suppressor of clathrin deficiency; acts as a targeting subunit for protein phosphatase type 1 2.21082901860945 717.776336669922 459.64241027832 SCD5 6897 // endocytosis // traceable author statement /// 7015 // actin filament organization // traceable author statement /// 9306 // protein secretion // inferred from genetic interaction /// 9306 // protein secretion // inferred from mutant phenotype /// 30866 // cortical actin cytoskeleton organization and biogenesis // inferred from mutant phenotype 300 // peripheral to membrane of membrane fraction // inferred from direct assay /// 30479 // actin cortical patch // inferred from direct assay 5515 // protein binding // inferred from direct assay 399.765777587891 551.738891601563 883.813781738281 519.51904296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR329C /GEN=SCD5 /DB_XREF=GI:6324905 /SEG=NC_001147:-936726,939344 /DEF=Multicopy suppressor of clathrin deficiency and of ts mutants of IPL1 /NOTE=Scd5p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 12181333]; go_component: peripheral to membrane of membrane fraction [goid GO:0000300] [evidence IDA] [pmid 8688556]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 12181333]; go_process: actin filament organization [goid GO:0007015] [evidence TAS] [pmid 12356757]; go_process: cortical actin cytoskeleton organization and biogenesis [goid GO:0030866] [evidence IMP] [pmid 12181333]; go_process: endocytosis [goid GO:0006897] [evidence TAS] [pmid 12356757]; go_process: protein secretion [goid GO:0009306] [evidence IGI,IMP] [pmid 8688556] --- --- --- --- --- --- S0005856 // SCD5 SGDID:S0005856, Chr XV from 939344-936726, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017782 // cdna:Genscan chromosome:SGD1:XV:936726:939344:-1 // ensembl // 11 // --- /// GENEFINDER00000022612 // cdna:GeneFinder chromosome:SGD1:XV:936726:939344:-1 // ensembl // 11 // --- /// YOR329C // cdna:known chromosome:SGD1:XV:936726:939344:-1 gene:YOR329C // ensembl // 11 // --- --- No cerevisiae_gene -1.74604331903947 1.38015538731366 1.16684994303229 2.21082901860945 1.29955857178027 Max fold change below threshold 4 2.21082901860945 Max fold change at or above threshold -0.911377444281052 -0.178328686531084 1.4234486230579 -0.333742492245761 588.709373474121 207.316515316308 0.352154262625175 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774170_at YLR221C.S1 Protein with a likely role in ribosomal maturation, required for accumulation of wild-type levels of large (60S) ribosomal subunits; binds to the helicase Dbp6p in pre-60S ribosomal particles in the nucleolus 2.21028537197199 98.7140121459961 178.79598236084 RSA3 27 // ribosomal large subunit assembly and maintenance // inferred from genetic interaction /// 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 27 // ribosomal large subunit assembly and maintenance // inferred from physical interaction 5730 // nucleolus // inferred from direct assay /// 30687 // nucleolar preribosome, large subunit precursor // inferred from direct assay --- 168.89909362793 76.4150619506836 121.012962341309 188.69287109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR221C /GEN=RSA3 /DB_XREF=GI:6323250 /SEG=NC_001144:-578364,579026 /DEF=Protein with a likely role in ribosomal maturation, required for accumulation of wild-type levels of large (60S) ribosomal subunits; binds to the helicase Dbp6p in pre-60S ribosomal particles in the nucleolus /NOTE=Rsa3p; go_component: nucleolar preribosome, large subunit precursor [goid GO:0030687] [evidence IDA] [pmid 15126390]; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IGI,IMP,IPI] [pmid 15126390] --- --- --- --- --- --- S0004211 // RSA3 SGDID:S0004211, Chr XII from 579026-578364, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017991 // cdna:Genscan chromosome:SGD1:XII:578364:579026:-1 // ensembl // 11 // --- /// GENEFINDER00000024611 // cdna:GeneFinder chromosome:SGD1:XII:578364:579026:-1 // ensembl // 11 // --- /// YLR221C // cdna:known chromosome:SGD1:XII:578364:579026:-1 gene:YLR221C // ensembl // 11 // --- --- No cerevisiae_gene 1.79082825314115 -2.21028537197199 1.08138751108843 -1.39571075990654 1.11719291702905 Max fold change below threshold 4 2.21028537197199 Max fold change at or above threshold 0.598764405934165 -1.23828340593675 -0.352417231627314 0.9919362316299 138.754997253418 50.3438348635341 0.362825381860573 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771410_at YKR098C.S1 Ubiquitin-specific protease that cleaves ubiquitin from ubiquitinated proteins 2.21028138798492 473.254791259766 960.000579833984 UBP11 --- --- 4843 // ubiquitin-specific protease activity // inferred from direct assay 934.263305664063 523.81982421875 422.689758300781 985.737854003906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR098C /GEN=UBP11 /DB_XREF=GI:6322951 /SEG=NC_001143:-632662,634815 /DEF=Ubiquitin-specific protease that cleaves ubiquitin from ubiquitinated proteins /NOTE=Ubp11p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: ubiquitin-specific protease activity [goid GO:0004843] [evidence IDA] [pmid 10527495]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001806 // UBP11 SGDID:S0001806, Chr XI from 634817-632664, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018499 // cdna:Genscan chromosome:SGD1:XI:632664:634817:-1 // ensembl // 11 // --- /// GENEFINDER00000022997 // cdna:GeneFinder chromosome:SGD1:XI:632664:634652:-1 // ensembl // 11 // --- /// YKR098C // cdna:known chromosome:SGD1:XI:632664:634817:-1 gene:YKR098C // ensembl // 11 // --- --- No cerevisiae_gene -2.15685679109328 -1.78355851090109 1.0497274770905 -2.21028138798492 1.05509640379513 Max fold change below threshold 4 2.21028138798492 Max fold change at or above threshold 0.764127932476335 -0.676956613823203 -1.03202858292221 0.944857264269076 716.627685546875 284.815684478237 0.397438851753107 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776924_at SPBC902.06.S1 --- 2.21024375427516 --- --- --- --- 6.73333120346069 14.2245168685913 14.882303237915 7.09909248352051 0.334473013877869 0.018554700538516 0.00585938012227416 0.0375977009534836 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC902.06 /DEF=hypothetical protein --- --- --- --- --- --- SPBC902.06 // |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.41177808535603 2.11255267842467 -1.10391385906136 2.21024375427516 1.0543209993698 Max fold change below threshold 4 2.21024375427516 Max fold change at or above threshold APPMPP No 4 0 APPP 1 3 0 No No 2 < x = 3
1774901_at SPAC25B8.17.S1 --- 2.20942295483181 --- --- --- --- 17.0225143432617 21.1790370941162 12.9405336380005 8.94892597198486 0.0805663987994194 0.0805663987994194 0.0561522990465164 0.0952147990465164 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25B8.17 /DEF=peptidase family A22 --- --- --- --- --- --- SPAC25B8.17 // |||peptidase family A22|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.82313876809692 1.24417795556153 -2.20942295483181 -1.31544145082814 -1.9021851780372 Max fold change below threshold 4 2.20942295483181 Max fold change at or above threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1778116_at SPBC36B7.04.S1 --- 2.20868364447202 --- --- --- --- 14.3812103271484 16.8582630157471 12.4071063995361 6.5112133026123 0.366210997104645 0.129638999700546 0.303710997104645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC36B7.04 /DEF=dihydrouridine synthase (predicted) --- --- --- --- --- --- SPBC36B7.04 // |||dihydrouridine synthase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.48499942785373 1.17224229618021 -2.06563862742721 -1.1591107437981 -2.20868364447202 Max fold change below threshold 4 2.20868364447202 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770049_at YOR157C.S1 Endopeptidase with trypsin-like activity that cleaves after basic residues; beta-type subunit of 20S proteasome synthesized as a proprotein before being proteolytically processed for assembly into 20S particle; human homolog is subunit Z 2.2084670420248 3359.00439453125 1750.13714599609 PUP1 6511 // ubiquitin-dependent protein catabolism // traceable author statement 19774 // proteasome core complex, beta-subunit complex (sensu Eukaryota) // traceable author statement /// 19774 // proteasome core complex, beta-subunit complex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement 1617.07543945313 3146.7509765625 3571.2578125 1883.19885253906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR157C /GEN=PUP1 /DB_XREF=GI:6324731 /SEG=NC_001147:-630966,631751 /DEF=putative proteasome subunit /NOTE=Pup1p; go_component: proteasome core complex (sensu Eukarya) [goid GO:0005839] [evidence TAS] [pmid 10872471]; go_component: proteasome core complex, beta-subunit complex (sensu Eukarya) [goid GO:0019774] [evidence TAS] [pmid 10500111]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 10872471]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10872471] --- --- --- --- --- --- S0005683 // PUP1 SGDID:S0005683, Chr XV from 631751-630966, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017581 // cdna:Genscan chromosome:SGD1:XV:630966:631751:-1 // ensembl // 11 // --- /// GENEFINDER00000022707 // cdna:GeneFinder chromosome:SGD1:XV:630966:631751:-1 // ensembl // 11 // --- /// YOR157C // cdna:known chromosome:SGD1:XV:630966:631751:-1 gene:YOR157C // ensembl // 11 // --- --- No cerevisiae_gene 1.49659434432428 1.94595187075916 1.16607793323843 2.2084670420248 1.164570808877 Max fold change below threshold 4 2.2084670420248 Max fold change at or above threshold -0.985660617735205 0.62260438934284 1.06892092702758 -0.705864698635215 2554.57077026367 951.134004891735 0.372326347722816 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776581_at YDR443C.S1 Required for stable association of Srb10p-Srb11p kinase with RNA polymerase holoenzyme; regulates YGP1 epxression; component of RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex; transcription factor 2.20823265781121 226.830612182617 412.944793701172 SSN2 122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement 5667 // transcription factor complex // traceable author statement 16251 // general RNA polymerase II transcription factor activity // traceable author statement 388.155181884766 175.776397705078 277.884826660156 437.734405517578 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR443C /GEN=SSN2 /DB_XREF=GI:6320651 /SEG=NC_001136:-1345664,1349926 /DEF=Required for stable association of Srb10p-Srb11p kinase with RNA polymerase holoenzyme; regulates YGP1 epxression; component of RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex /NOTE=Ssn2p; go_component: transcription factor complex [goid GO:0005667] [evidence TAS] [pmid 9774381]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9774381]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence TAS] [pmid 9774381] --- --- --- --- --- --- S0002851 // SSN2 SGDID:S0002851, Chr IV from 1349928-1345666, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023584 // cdna:GeneFinder chromosome:SGD1:IV:1345666:1349928:-1 // ensembl // 11 // --- /// GENSCAN00000025447 // cdna:Genscan chromosome:SGD1:IV:1345666:1349928:-1 // ensembl // 11 // --- /// YDR443C // cdna:known chromosome:SGD1:IV:1345666:1349928:-1 gene:YDR443C // ensembl // 11 // --- YDR442W // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene -2.18911688313029 -2.20823265781121 1.09947221765996 -1.39682035377724 1.12773041800465 Max fold change below threshold 4 2.20823265781121 Max fold change at or above threshold 0.583386107428109 -1.23151659765912 -0.358939496144183 1.0070699863752 319.887702941895 117.019377173433 0.365813928129301 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779492_at SPAC1834.05.S1 --- 2.20821837990409 --- --- --- --- 2.05900812149048 2.23036050796509 3.02946424484253 3.4211905002594 0.533936023712158 0.633789002895355 0.194580003619194 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1834.05 /DEF=glycosyl transferase family 22 --- --- --- --- --- --- SPAC1834.05 // |||glycosyl transferase family 22|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.20821837990409 1.08322084050381 1.01519180056382 1.47132214449429 1.66157212521477 Max fold change below threshold 2 2.20821837990409 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770645_at YPR175W.S1 Second largest subunit of DNA polymerase II (DNA polymerase epsilon), required for normal yeast chromosomal replication; expression peaks at the G1/S phase boundary; potential Cdc28p substrate 2.20815944916624 112.315288543701 252.731956481934 DPB2 6272 // leading strand elongation // traceable author statement /// 6273 // lagging strand elongation // traceable author statement /// 6289 // nucleotide-excision repair // traceable author statement /// 6298 // mismatch repair // traceable author statement 5634 // nucleus // inferred from direct assay /// 5657 // replication fork // traceable author statement /// 5737 // cytoplasm // inferred from direct assay /// 8622 // epsilon DNA polymerase complex // inferred from direct assay 3893 // epsilon DNA polymerase activity // traceable author statement 232.189743041992 115.750022888184 108.880554199219 273.274169921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR175W /GEN=DPB2 /DB_XREF=GI:37362708 /SEG=NC_001148:+888968,891037 /DEF=Second largest subunit of DNA polymerase II (DNA polymerase epsilon), required for normal yeast chromosomal replication; expression peaks at the G1/S phase boundary; potential Cdc28p substrate /NOTE=Dpb2p; go_component: epsilon DNA polymerase complex [goid GO:0008622] [evidence IDA] [pmid 2406268]; go_component: replication fork [goid GO:0005657] [evidence TAS] [pmid 9745046]; go_function: epsilon DNA polymerase activity [goid GO:0003893] [evidence TAS] [pmid 9745046]; go_process: lagging strand elongation [goid GO:0006273] [evidence TAS] [pmid 9745046]; go_process: leading strand elongation [goid GO:0006272] [evidence TAS] [pmid 9745046]; go_process: mismatch repair [goid GO:0006298] [evidence TAS] [pmid 10072354]; go_process: nucleotide-excision repair [goid GO:0006289] [evidence TAS] [pmid 9745046] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 1.5 --- S0006379 // DPB2 SGDID:S0006379, Chr XVI from 888970-891039, Verified ORF // sgd // 11 // --- /// GENSCAN00000017319 // cdna:Genscan chromosome:SGD1:XVI:888961:891039:1 // ensembl // 11 // --- /// GENEFINDER00000020767 // cdna:GeneFinder chromosome:SGD1:XVI:888970:891039:1 // ensembl // 11 // --- /// YPR175W // cdna:known chromosome:SGD1:XVI:888970:891039:1 gene:YPR175W // ensembl // 11 // --- --- No cerevisiae_gene 2.20815944916624 -2.00595850651616 -1.4384899623815 -2.1325180125108 1.17694333238679 Max fold change below threshold 4 2.20815944916624 Max fold change at or above threshold 0.599586372991127 -0.806113704551932 -0.889044277177854 1.09557160873866 182.523622512817 82.8339714950623 0.453826032787868 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775425_at YML095C.S1 Single-stranded DNA endonuclease (with Rad1p), cleaves single-stranded DNA during nucleotide excision repair and double-strand break repair; subunit of Nucleotide Excision Repair Factor 1 (NEF1); homolog of human XPF protein 2.20727834895742 209.813049316406 116.063461303711 RAD10 735 // removal of nonhomologous ends // traceable author statement /// 736 // double-strand break repair via single-strand annealing, removal of nonhomologous ends // traceable author statement /// 6296 // nucleotide-excision repair, DNA incision, 5'-to lesion // traceable author statement 110 // nucleotide excision repair factor 1 complex // traceable author statement 14 // single-stranded DNA specific endodeoxyribonuclease activity // traceable author statement 106.315620422363 184.957931518555 234.668167114258 125.811302185059 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML095C /GEN=RAD10 /DB_XREF=GI:6323543 /SEG=NC_001145:-81481,82113 /DEF=Single-stranded DNA endonuclease (with Rad1p), cleaves single-stranded DNA during nucleotide excision repair and double-strand break repair; subunit of Nucleotide Excision Repair Factor 1 (NEF1); homolog of human XPF protein /NOTE=Rad10p; go_component: nucleotide excision repair factor 1 complex [goid GO:0000110] [evidence TAS] [pmid 10915862]; go_function: single-stranded DNA specific endodeoxyribonuclease activity [goid GO:0000014] [evidence TAS] [pmid 10915862]; go_process: double-strand break repair via single-strand annealing, removal of nonhomologous ends [goid GO:0000736] [evidence TAS] [pmid 10357855]; go_process: nucleotide-excision repair, DNA incision, 5'-to lesion [goid GO:0006296] [evidence TAS] [pmid 10915862]; go_process: removal of nonhomologous ends [goid GO:0000735] [evidence TAS] [pmid 10357855] --- --- --- --- --- --- S0004560 // RAD10 SGDID:S0004560, Chr XIII from 82113-81481, reverse complement, Verified ORF // sgd // 11 // --- /// YML095C // cdna:known chromosome:SGD1:XIII:81481:82113:-1 gene:YML095C // ensembl // 11 // --- --- No cerevisiae_gene -1.25561838502708 1.73970608254711 2.10533992785505 2.20727834895742 1.18337551608357 Max fold change below threshold 4 2.20727834895742 Max fold change at or above threshold -0.970376899273154 0.377364726395709 1.22927959003938 -0.636267417161936 162.938255310059 58.3511777023006 0.358118341154832 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773729_at SPCC417.04.S1 --- 2.20619944815219 --- --- --- --- 6.04160308837891 6.16537094116211 13.3289813995361 4.93687057495117 0.129638999700546 0.366210997104645 0.0676269978284836 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC417.04 /DEF=dubious --- --- --- --- --- --- SPCC417.04 // |||dubious|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.27743025011405 1.02048592914375 -1.97852090487065 2.20619944815219 -1.2237718199527 Max fold change below threshold 4 2.20619944815219 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775452_at YOR239W.S1 Nonessential protein that binds actin filaments and localizes to actin patches and cables, has similarity to S-adenosylmethionine (AdoMet)-dependent methyltransferases 2.20614164718145 594.767639160156 364.051422119141 ABP140 30036 // actin cytoskeleton organization and biogenesis // inferred from direct assay 5884 // actin filament // inferred from physical interaction /// 5884 // actin filament // inferred from direct assay 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from sequence similarity /// 30674 // protein binding, bridging // inferred from direct assay /// 51015 // actin filament binding // inferred from direct assay 348.999633789063 444.346130371094 745.189147949219 379.103210449219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR239W /GEN=ABP140 /DB_XREF=GI:9864778 /SEG=NC_001147:+784857,786744 /DEF=Nonessential protein that binds actin filaments and localizes to actin patches and cables, has similarity to S-adenosylmethionine (AdoMet)-dependent methyltransferases /NOTE=Abp140p; go_component: actin filament [goid GO:0005884] [evidence IDA,IPI] [pmid 9467951]; go_function: S-adenosylmethionine-dependent methyltransferase activity [goid GO:0008757] [evidence ISS] [pmid 12872006]; go_function: actin filament binding [goid GO:0051015] [evidence IDA] [pmid 9467951]; go_function: protein binding, bridging [goid GO:0030674] [evidence IDA] [pmid 9467951]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence IDA] [pmid 9467951] --- --- --- --- --- --- S0005765 // ABP140 SGDID:S0005765, Chr XV from 784857-785687,785689-786744, one base removed to allow translational frameshift, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022616 // cdna:GeneFinder chromosome:SGD1:XV:784857:786744:1 // ensembl // 11 // --- /// GENSCAN00000017663 // cdna:Genscan chromosome:SGD1:XV:785674:786744:1 // ensembl // 11 // --- /// YOR239W // cdna:known chromosome:SGD1:XV:784857:786744:1 gene:YOR239W // ensembl // 11 // --- --- No cerevisiae_gene 2.20614164718145 1.27319941727979 1.31382841233226 2.13521469882004 1.08625675715852 Max fold change below threshold 4 2.20614164718145 Max fold change at or above threshold -0.71811375474608 -0.193079748003063 1.46353922156556 -0.55234571881642 479.409530639648 181.60061130802 0.378800586349881 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774911_at SPBC365.02c.S1 --- 2.20610429849604 --- --- --- --- 9.16446399688721 10.3084907531738 8.96596050262451 4.15413904190063 0.149657994508743 0.171387001872063 0.171387001872063 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC365.02c /GEN=cox10 /DEF=involved in cytochrome c oxidase biogenesis --- --- --- --- --- --- SPBC365.02c // |cox10||protoheme IX farnesyltransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.57792635731628 1.12483291512468 1.02020149148194 -1.02213967975931 -2.20610429849604 Max fold change below threshold 4 2.20610429849604 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1776394_at SPCPJ732.03.S1 --- 2.20586870094911 --- --- --- --- 7.93013906478882 12.0013694763184 5.49443578720093 3.64199185371399 0.0676269978284836 0.0461426004767418 0.0952147990465164 0.303710997104645 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCPJ732.03 /GEN=meu15 /DEF=meiotic expression upregulated --- --- --- --- --- --- AB054299 // Schizosaccharomyces pombe mRNA for Meu15, complete cds. // gb // 11 // --- /// SPCPJ732.03 // |meu15||meiotic expression upregulated|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.31147479835848 1.5133870135527 -2.20586870094911 -1.44330362059409 -2.1774181226413 Max fold change below threshold 4 2.20586870094911 Max fold change at or above threshold APPAAA No 4 0 APAA 3 1 0 No No x = 1
1776239_at YIL118W.S1 Non-essential small GTPase of the Rho/Rac subfamily of Ras-like proteins involved in the establishment of cell polarity; GTPase activity positively regulated by the GTPase activating protein (GAP) Rgd1p 2.20576997625381 732.3984375 786.045074462891 RHO3 6887 // exocytosis // inferred from mutant phenotype /// 7015 // actin filament organization // traceable author statement /// 7264 // small GTPase mediated signal transduction // inferred from sequence similarity /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from genetic interaction 5622 // intracellular // traceable author statement 3924 // GTPase activity // inferred from sequence similarity /// 4871 // signal transducer activity // inferred from sequence similarity 731.81982421875 737.858825683594 726.938049316406 840.270324707031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL118W /GEN=RHO3 /DB_XREF=GI:6322073 /SEG=NC_001141:+139749,140444 /DEF=ras homolog--GTP binding protein /NOTE=Rho3p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 9891811]; go_function: GTPase activity [goid GO:0003924] [evidence ISS] [pmid 9891811]; go_function: signal transducer activity [goid GO:0004871] [evidence ISS] [pmid 9891811]; go_process: actin filament organization [goid GO:0007015] [evidence TAS] [pmid 9891811]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IGI,IMP,IPI] [pmid 10639324]; go_process: exocytosis [goid GO:0006887] [evidence IMP] [pmid 9891811]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence ISS] [pmid 9891811] --- --- --- --- --- --- S0001380 // RHO3 SGDID:S0001380, Chr IX from 139749-140444, Verified ORF // sgd // 11 // --- /// GENSCAN00000016387 // cdna:Genscan chromosome:SGD1:IX:139749:140444:1 // ensembl // 11 // --- /// YIL118W // cdna:known chromosome:SGD1:IX:139749:140444:1 gene:YIL118W // ensembl // 11 // --- --- No cerevisiae_gene 2.20576997625381 1.00825203317127 -1.01806479879226 -1.00671553085842 1.1481928978954 Max fold change below threshold 4 2.20576997625381 Max fold change at or above threshold -0.505415049848363 -0.394028661004654 -0.595456968315423 1.49490067916844 759.221755981445 54.2166913528131 0.0714108768955484 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777051_at YPL086C.S1 Histone acetyltransferase subunit of the Elongator complex, which is a component of the RNA polymerase II holoenzyme; activity is directed specifically towards histones H3 and H4; disruption confers resistance to K. lactis zymotoxin 2.20494774540494 477.246551513672 507.493438720703 ELP3 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 8023 // transcription elongation factor complex // inferred from direct assay /// 16591 // DNA-directed RNA polymerase II, holoenzyme // inferred from direct assay 4402 // histone acetyltransferase activity // traceable author statement /// 16944 // RNA polymerase II transcription elongation factor activity // inferred from mutant phenotype /// 16944 // RNA polymerase II transcription elongation factor activity // inferred from physical interaction 487.245483398438 354.131591796875 600.361511230469 527.741394042969 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL086C /GEN=ELP3 /DB_XREF=GI:6325171 /SEG=NC_001148:-384768,386441 /DEF=Histone acetyltransferase subunit of the Elongator complex, which is a component of the RNA polymerase II holoenzyme; activity is directed specifically towards histones H3 and H4; disruption confers resistance to K. lactis zymotoxin /NOTE=Elp3p; go_component: DNA-directed RNA polymerase II, holoenzyme [goid GO:0016591] [evidence IDA] [pmid 11296232]; go_component: transcription elongation factor complex [goid GO:0008023] [evidence IDA] [pmid 11689709]; go_function: Pol II transcription elongation factor activity [goid GO:0016944] [evidence IMP,IPI] [pmid 11689709]; go_function: histone acetyltransferase activity [goid GO:0004402] [evidence TAS] [pmid 11994165]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP] [pmid 11689709] --- --- --- --- --- --- S0006007 // ELP3 SGDID:S0006007, Chr XVI from 386443-384770, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017123 // cdna:Genscan chromosome:SGD1:XVI:384770:386140:-1 // ensembl // 11 // --- /// GENEFINDER00000021003 // cdna:GeneFinder chromosome:SGD1:XVI:384770:386443:-1 // ensembl // 11 // --- /// YPL086C // cdna:known chromosome:SGD1:XVI:384770:386443:-1 gene:YPL086C // ensembl // 11 // --- --- No cerevisiae_gene 2.20494774540494 -1.37588821411312 1.07955325233652 1.23215408184612 1.0831119261734 Max fold change below threshold 4 2.20494774540494 Max fold change at or above threshold -0.0495796012371785 -1.33745521299289 1.0448168722699 0.34221794196017 492.369995117188 103.359276615304 0.20992196445826 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777711_at YPR049C.S1 Peripheral membrane protein required for delivery of aminopeptidase I (Lap4p) to the vacuole in the cytoplasm-to-vacuole targeting pathway; also required for peroxisomal degradation (pexophagy) 2.20476197054739 1627.65539550781 2371.24353027344 ATG11 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 30242 // peroxisome degradation // inferred from mutant phenotype 19898 // extrinsic to membrane // inferred from direct assay --- 2493.63208007813 1856.77429199219 1398.53649902344 2248.85498046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR049C /GEN=ATG11 /DB_XREF=GI:6325306 /SEG=NC_001148:-661132,664668 /DEF=Peripheral membrane protein required for delivery of aminopeptidase I (Lap4p) to the vacuole in the cytoplasm-to-vacuole targeting pathway; also required for peroxisomal degradation (pexophagy) /NOTE=Atg11p; go_component: extrinsic to membrane [goid GO:0019898] [evidence IDA] [pmid 11309418]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: peroxisome degradation [goid GO:0030242] [evidence IMP] [pmid 11309418]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 11309418] --- --- --- --- --- --- S0006253 // ATG11 SGDID:S0006253, Chr XVI from 664670-661134, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017223 // cdna:Genscan chromosome:SGD1:XVI:661134:664670:-1 // ensembl // 11 // --- /// GENEFINDER00000020772 // cdna:GeneFinder chromosome:SGD1:XVI:661134:664670:-1 // ensembl // 11 // --- /// YPR049C // cdna:known chromosome:SGD1:XVI:661134:664670:-1 gene:YPR049C // ensembl // 11 // --- --- No cerevisiae_gene -2.20476197054739 -1.34299149381406 -1.17316647601886 -1.78302967553537 -1.10884521311301 Max fold change below threshold 4 2.20476197054739 Max fold change at or above threshold 1.03203452042138 -0.297958075523204 -1.25492662208385 0.520850177185669 1999.44946289063 478.843107869807 0.239487477306647 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779631_at YDL132W.S1 Cullin, structural protein of SCF complexes (which also contain Skp1p, Cdc34p, and an F-box protein) involved in ubiquitination; SCF promotes the G1-S transition by targeting G1 cyclins and the Cln-CDK inhibitor Sic1p for degradation 2.20380767030503 793.6240234375 1477.81762695313 CDC53 82 // G1/S transition of mitotic cell cycle // traceable author statement /// 86 // G2/M transition of mitotic cell cycle // inferred from physical interaction /// 16567 // protein ubiquitination // inferred from genetic interaction /// 16567 // protein ubiquitination // inferred from physical interaction /// 31146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from direct assay 152 // nuclear ubiquitin ligase complex // traceable author statement /// 19005 // SCF ubiquitin ligase complex // traceable author statement /// 19005 // SCF ubiquitin ligase complex // inferred from direct assay 4842 // ubiquitin-protein ligase activity // traceable author statement /// 5198 // structural molecule activity // traceable author statement 1433.57836914063 650.500671386719 936.747375488281 1522.05688476563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL132W /GEN=CDC53 /DB_XREF=GI:6320070 /SEG=NC_001136:+224304,226751 /DEF=Cullin, structural protein of SCF complexes (which also contain Skp1p, Cdc34p, and an F-box protein) involved in ubiquitination; SCF promotes the G1-S transition by targeting G1 cyclins and the Cln-CDK inhibitor Sic1p for degradation /NOTE=Cdc53p; go_component: SCF ubiquitin ligase complex [goid GO:0019005] [evidence TAS] [pmid 9716410]; go_component: nuclear ubiquitin ligase complex [goid GO:0000152] [evidence TAS] [pmid 9346231]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 10409741]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 9346231]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence TAS] [pmid 9346231]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence IPI] [pmid 10409741]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 9346231] --- --- --- --- scop // a.4.5.SCF ubiquitin ligase complex WHB domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; SCF ubiquitin ligase complex WHB domain // 4.00000007201004E-35 --- S0002290 // CDC53 SGDID:S0002290, Chr IV from 224304-226751, Verified ORF // sgd // 11 // --- /// GENSCAN00000025001 // cdna:Genscan chromosome:SGD1:IV:224304:226751:1 // ensembl // 11 // --- /// GENEFINDER00000023549 // cdna:GeneFinder chromosome:SGD1:IV:224442:226751:1 // ensembl // 11 // --- /// YDL132W // cdna:known chromosome:SGD1:IV:224304:226751:1 gene:YDL132W // ensembl // 11 // --- --- No cerevisiae_gene -1.09564135497136 -2.20380767030503 -1.2503545672661 -1.53037884775857 1.06171864582335 Max fold change below threshold 4 2.20380767030503 Max fold change at or above threshold 0.720292650156833 -1.1733814288097 -0.481166639266449 0.934255417919314 1135.72082519531 413.522953316903 0.364106164246648 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777034_at YOR143C.S1 Thiamine pyrophosphokinase, phosphorylates thiamine to produce the coenzyme thiamine pyrophosphate (thiamine diphosphate) 2.20370699976146 68.889497756958 140.616653442383 THI80 9229 // thiamin diphosphate biosynthesis // traceable author statement /// 9229 // thiamin diphosphate biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4788 // thiamin diphosphokinase activity // inferred from mutant phenotype /// 4788 // thiamin diphosphokinase activity // inferred from direct assay 130.21533203125 59.0892219543457 78.6897735595703 151.017974853516 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR143C /GEN=THI80 /DB_XREF=GI:6324717 /SEG=NC_001147:-601383,602342 /DEF=Thiamin pyrophosphokinase /NOTE=Thi80p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: thiamin diphosphokinase activity [goid GO:0004788] [evidence IDA,IMP] [pmid 8394343]; go_process: thiamin biosynthesis [goid GO:0009228] [evidence TAS] [pmid 9655908] --- --- --- --- scop // a.140.3.Rho termination factor, N-terminal domain // All alpha proteins; LEM/SAP HeH motif; Rho termination factor, N-terminal domain; Rho termination factor, N-terminal domain // 4.09999990463257 /// scop // a.140.3.Rho termination factor, N-terminal domain // All alpha proteins; LEM/SAP HeH motif; Rho termination factor, N-terminal domain; Rho termination factor, N-terminal domain // 2.29999995231628 --- S0005669 // THI80 SGDID:S0005669, Chr XV from 602342-601383, reverse complement, Verified ORF // sgd // 11 // --- /// YOR143C // cdna:known chromosome:SGD1:XV:601383:602342:-1 gene:YOR143C // ensembl // 11 // --- --- No cerevisiae_gene 1.35740793776085 -2.20370699976146 1.30387089350197 -1.65479357915134 1.15975571000559 Max fold change below threshold 4 2.20370699976146 Max fold change at or above threshold 0.591812149912639 -1.06135225963786 -0.605782085952279 1.0753221956775 104.75307559967 43.0242204985792 0.410720355963606 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769703_at YJL097W.S1 Protein required for cell viability 2.20330270890114 497.856323242188 529.935440063477 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay /// 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 42175 // nuclear envelope-endoplasmic reticulum network // inferred from direct assay --- 494.498565673828 385.959716796875 609.7529296875 565.372314453125 0.00122069998178631 0.00805663969367743 0.00195312988944352 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL097W /GEN=SAP185 /DB_XREF=GI:6322364 /SEG=NC_001142:+245508,246161 /DEF=Protein required for cell viability /NOTE=Yjl097wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_component: nuclear envelope-endoplasmic reticulum network [goid GO:0042175] [evidence IDA] [pmid 14690591]; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14690591]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003633 // span:12-34,49-71,84-106,121-140,145-167,177-199 // numtm:6 S0003633 // YJL097W SGDID:S0003633, Chr X from 245508-246161, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000024314 // cdna:GeneFinder chromosome:SGD1:X:245508:246161:1 // ensembl // 11 // --- /// YJL097W // cdna:known chromosome:SGD1:X:245508:246161:1 gene:YJL097W // ensembl // 11 // --- --- No cerevisiae_gene 2.20330270890114 -1.28121807575601 1.02289806253857 1.23307320185372 1.1433244779643 Max fold change below threshold 4 2.20330270890114 Max fold change at or above threshold -0.198725485964195 -1.31070590183277 0.982055376857392 0.52737601093957 513.895881652832 97.6085975328739 0.189938470063114 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1773743_at YNL024C-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 2.20256067725828 729.569580078125 791.395599365234 --- --- --- --- 742.124145507813 683.252136230469 775.887023925781 840.667053222656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL024C-A /GEN=SSN8 /DB_XREF=GI:33438870 /SEG=NC_001146:-586600,586818 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ynl024c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028698 // YNL024C-A SGDID:S0028698, Chr XIV from 586819-586601, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YNL024C-A // cdna:known chromosome:SGD1:XIV:586601:586819:-1 gene:YNL024C-A // ensembl // 11 // --- --- No cerevisiae_gene -2.20256067725828 -1.08616439840517 1.20055264585908 1.04549491971436 1.13278493674049 Max fold change below threshold 4 2.20256067725828 Max fold change at or above threshold -0.279224141608098 -1.174642406016 0.234294903614418 1.21957164400968 760.48258972168 65.7480549788349 0.0864557004558084 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775549_at YKL137W.S1 Hypothetical protein 2.20214194304989 497.794891357422 337.966796875 --- --- --- --- 309.461029052734 556.220764160156 439.369018554688 366.472564697266 0.000732421991415322 0.000732421991415322 0.00195312988944352 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL137W /GEN=MRPL31 /DB_XREF=GI:6322712 /SEG=NC_001143:+185988,186299 /DEF=Hypothetical ORF /NOTE=Ykl137wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001620 // YKL137W SGDID:S0001620, Chr XI from 185988-186299, Uncharacterized ORF // sgd // 11 // --- /// YKL137W // cdna:known chromosome:SGD1:XI:185988:186299:1 gene:YKL137W // ensembl // 11 // --- --- No cerevisiae_gene 1.15463581928912 1.79738549265075 2.20214194304989 1.41978788055997 1.18422848207752 Max fold change below threshold 4 2.20214194304989 Max fold change at or above threshold -1.01846662912517 1.29952806097402 0.201854140533221 -0.482915572382078 417.880844116211 106.453969097256 0.254747185941003 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774973_at SPCC1906.01.S1 --- 2.2021373235003 --- --- --- --- 2.33088326454163 2.2590696811676 2.42350149154663 2.14055585861206 0.533936023712158 0.5 0.432372987270355 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1906.01 /DEF=mannose-1-phosphate guanyltransferase --- --- --- --- --- --- D89128 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0487. // gb // 11 // --- /// SPCC1906.01 // |||mannose-1-phosphate guanyltransferase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 2.2021373235003 -1.03178900764889 1.11673122497745 1.03973524904226 -1.08891494476251 Max fold change below threshold 0 2.2021373235003 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780161_at YIL133C.S1 N-terminally acetylated protein component of the large (60S) ribosomal subunit, binds to 5.8 S rRNA; has similarity to Rpl16Bp, E. coli L13 and rat L13a ribosomal proteins; transcriptionally regulated by Rap1p 2.20165256690262 2102.65356445313 4029.13598632813 RPL16A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3723 // RNA binding // inferred from direct assay /// 3735 // structural constituent of ribosome // traceable author statement 4195.91064453125 1905.80053710938 2299.50659179688 3862.361328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL133C /GEN=RPL16A /DB_XREF=GI:6322058 /SEG=NC_001141:-98527,99416 /DEF=N-terminally acetylated protein component of the large (60S) ribosomal subunit, binds to 5.8 S rRNA; has similarity to Rpl16Bp, E. coli L13 and rat L13a ribosomal proteins; transcriptionally regulated by Rap1p /NOTE=Rpl16ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 6337137]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0001395 // RPL16A SGDID:S0001395, Chr IX from 99416-99386,99095-98527, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000016376 // cdna:Genscan chromosome:SGD1:IX:98527:99135:-1 // ensembl // 10 // --- /// GENEFINDER00000019052 // cdna:GeneFinder chromosome:SGD1:IX:98527:99135:-1 // ensembl // 10 // --- /// YIL133C // cdna:known chromosome:SGD1:IX:98527:99416:-1 gene:YIL133C // ensembl // 11 // --- --- No cerevisiae_gene 1.25815651283424 -2.20165256690262 -1.26266646634196 -1.82470042029864 -1.08635891053937 Max fold change below threshold 4 2.20165256690262 Max fold change at or above threshold 0.998222264673947 -1.02479259751723 -0.677004428998069 0.703574761841348 3065.89477539063 1132.02831586784 0.369232605422214 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773161_at YJL096W.S1 Mitochondrial ribosomal protein of the large subunit 2.20134868417603 527.109802246094 1191.14556884766 MRPL49 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement /// 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // traceable author statement 1153.25317382813 530.334777832031 523.884826660156 1229.03796386719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL096W /GEN=MRPL49 /DB_XREF=GI:37362666 /SEG=NC_001142:+246407,246892 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl49p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0003632 // MRPL49 SGDID:S0003632, Chr X from 246407-246892, Verified ORF // sgd // 11 // --- /// YJL096W // cdna:known chromosome:SGD1:X:246407:246892:1 gene:YJL096W // ensembl // 11 // --- --- No cerevisiae_gene -1.76887352164408 -2.174575800106 1.11854913230554 -2.20134868417603 1.06571392280457 Max fold change below threshold 4 2.20134868417603 Max fold change at or above threshold 0.764684067776737 -0.854814384148549 -0.871583331742626 0.961713648114438 859.127685546875 384.636610955422 0.447705989954895 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775861_at YBR130C.S1 Protein that acts as an adaptor between Myo4p and the She2p-mRNA complex; part of the mRNA localization machinery that restricts accumulation of certain proteins to the bud; also required for cortical ER inheritance 2.20082070290172 436.223114013672 1025.31439208984 SHE3 8298 // intracellular mRNA localization // inferred from mutant phenotype /// 48309 // endoplasmic reticulum inheritance // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 30478 // actin cap // inferred from direct assay 3729 // mRNA binding // inferred from direct assay 945.869995117188 442.665649414063 429.780578613281 1104.7587890625 0.000732421991415322 0.00292969006113708 0.00292969006113708 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR130C /GEN=SHE3 /DB_XREF=GI:6319606 /SEG=NC_001134:-495548,496825 /DEF=Protein that acts as an adaptor between Myo4p and the She2p-mRNA complex; part of the mRNA localization machinery that restricts accumulation of certain proteins to the bud; also required for cortical ER inheritance /NOTE=She3p; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IDA] [pmid 10652251]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: mRNA binding [goid GO:0003729] [evidence IDA] [pmid 10212145]; go_process: endoplasmic reticulum inheritance [goid GO:0048309] [evidence IMP] [pmid 14691136]; go_process: mRNA localization, intracellular [goid GO:0008298] [evidence IMP] [pmid 10212145] --- --- --- --- --- --- S0000334 // SHE3 SGDID:S0000334, Chr II from 496863-495586, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000021245 // cdna:Genscan chromosome:SGD1:II:495586:496701:-1 // ensembl // 10 // --- /// YBR130C // cdna:known chromosome:SGD1:II:495586:496863:-1 gene:YBR130C // ensembl // 10 // --- --- No cerevisiae_gene 1.05238665420329 -2.1367594173372 -1.27768642233499 -2.20082070290172 1.16798164099246 Max fold change below threshold 4 2.20082070290172 Max fold change at or above threshold 0.621173011306743 -0.831989024029015 -0.869198749799856 1.08001476252213 730.768753051758 346.282337046369 0.473860349940063 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773472_at SPCC306.07c.S1 --- 2.20066891000718 --- --- --- --- 21.5403594970703 22.3860988616943 15.9717378616333 12.480583190918 0.030273400247097 0.030273400247097 0.0561522990465164 0.00415039015933871 P P M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC306.07c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC306.07c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.86516251577857 1.03926301066326 -2.20066891000718 -1.34865471019367 -1.72590969248497 Max fold change below threshold 4 2.20066891000718 Max fold change at or above threshold PPPPMP No 3 0 PPMP 0 3 1 No No 2 < x = 3
1776281_at YKR030W.S1 Golgi membrane protein of unknown function, interacts with Gea1p and Gea2p; required for localization of Gea2p; computational analysis suggests a possible role in either cell wall synthesis or protein-vacuolar targeting 2.20056711604285 586.995758056641 1224.54943847656 GMH1 6810 // transport // inferred from physical interaction 30173 // integral to Golgi membrane // inferred from direct assay --- 1227.79113769531 557.943054199219 616.048461914063 1221.30773925781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR030W /GEN=GMH1 /DB_XREF=GI:6322882 /SEG=NC_001143:+499924,500745 /DEF=Golgi membrane protein of unknown function, interacts with Gea1p and Gea2p; required for localization of Gea2p; computational analysis suggests a possible role in either cell wall synthesis or protein-vacuolar targeting /NOTE=Gmh1p; go_component: integral to Golgi membrane [goid GO:0030173] [evidence IDA] [pmid 12808035]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: transport [goid GO:0006810] [evidence IPI] [pmid 12808035] --- --- --- --- scop // a.4.5.Histone H1/H5 // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Histone H1/H5 // 1.89999997615814 S0001738 // span:92-114,134-156,183-202,207-229,242-264 // numtm:5 S0001738 // GMH1 SGDID:S0001738, Chr XI from 499924-500745, Verified ORF // sgd // 11 // --- /// YKR030W // cdna:known chromosome:SGD1:XI:499924:500745:1 gene:YKR030W // ensembl // 11 // --- --- No cerevisiae_gene -1.10860927969851 -2.20056711604285 1.08967331191437 -1.99301063731344 -1.00530857066495 Max fold change below threshold 4 2.20056711604285 Max fold change at or above threshold 0.87299871420015 -0.942972865072799 -0.785447940224912 0.855422091097561 905.772598266602 368.864849616356 0.407237810375653 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774440_at YMR110C.S1 Hypothetical protein 2.19902115559294 4506.83959960938 4213.40661621094 --- --- 5739 // mitochondrion // inferred from direct assay /// 5768 // endosome // inferred from direct assay /// 5811 // lipid particle // inferred from direct assay --- 4414.28076171875 4635.83935546875 4377.83984375 4012.53247070313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR110C /GEN=MYO5 /DB_XREF=GI:6323757 /SEG=NC_001145:-490393,491991 /DEF=Hypothetical ORF /NOTE=Ymr110cp; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 14562095]; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004716 // span:130-152 // numtm:1 S0004716 // YMR110C SGDID:S0004716, Chr XIII from 491991-490393, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018804 // cdna:Genscan chromosome:SGD1:XIII:490393:491991:-1 // ensembl // 11 // --- /// GENEFINDER00000021967 // cdna:GeneFinder chromosome:SGD1:XIII:490393:491991:-1 // ensembl // 11 // --- /// YMR110C // cdna:known chromosome:SGD1:XIII:490393:491991:-1 gene:YMR110C // ensembl // 11 // --- --- No cerevisiae_gene -2.19902115559294 1.05019132350425 1.03368948460181 -1.00832394954347 -1.10012337443969 Max fold change below threshold 4 2.19902115559294 Max fold change at or above threshold 0.209706800765688 1.06761589781901 0.0686019377079236 -1.34592463629263 4360.12310791016 258.254160622601 0.0592309332170174 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770048_at YOR062C.S1 Protein of unknown function; similar to YKR075Cp and Reg1p; expression regulated by glucose and Rgt1p 2.1983231287835 7014.40795898438 3751.07409667969 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 4040.32080078125 8881.9306640625 5146.88525390625 3461.82739257813 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR062C /GEN=CKA2 /DB_XREF=GI:6324636 /SEG=NC_001147:-442726,443532 /DEF=Protein of unknown function; similar to YKR075Cp and Reg1p; expression regulated by glucose and Rgt1p /NOTE=Yor062cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005588 // YOR062C SGDID:S0005588, Chr XV from 443532-442726, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017507 // cdna:Genscan chromosome:SGD1:XV:442726:443310:-1 // ensembl // 11 // --- /// GENEFINDER00000022555 // cdna:GeneFinder chromosome:SGD1:XV:442726:443379:-1 // ensembl // 11 // --- /// YOR062C // cdna:known chromosome:SGD1:XV:442726:443532:-1 gene:YOR062C // ensembl // 11 // --- --- No cerevisiae_gene 1.10311765785731 2.1983231287835 -1.07972313309263 1.27388034457834 -1.16710636972928 Max fold change below threshold 4 2.1983231287835 Max fold change at or above threshold -0.551235591329475 1.43686591533197 -0.0968490301238071 -0.788781293878689 5382.74102783203 2435.29309095068 0.452426204113989 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776930_at YNL115C.S1 Hypothetical protein 2.19773670311229 2090.47491455078 2182.27600097656 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 2175.3896484375 2034.42761230469 2146.52221679688 2189.16235351563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL115C /GEN=MLS1 /DB_XREF=GI:6324214 /SEG=NC_001146:-410119,412053 /DEF=Hypothetical ORF /NOTE=Ynl115cp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005059 // span:81-103,118-137,149-168,183-205,274-292 // numtm:5 S0005059 // YNL115C SGDID:S0005059, Chr XIV from 412053-410119, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019941 // cdna:Genscan chromosome:SGD1:XIV:410119:412053:-1 // ensembl // 11 // --- /// YNL115C // cdna:known chromosome:SGD1:XIV:410119:412053:-1 gene:YNL115C // ensembl // 11 // --- --- No cerevisiae_gene -2.19773670311229 -1.06928830265586 1.08718961536614 -1.01344846627476 1.00633114398058 Max fold change below threshold 4 2.19773670311229 Max fold change at or above threshold 0.555367849451476 -1.45122978872272 0.144439334658622 0.751422604612624 2136.37545776367 70.2492784059458 0.0328824590034758 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778562_at SPBC1703.01c.S1 --- 2.1975997409967 --- --- --- --- 4.21176481246948 8.79291534423828 6.96452045440674 3.03813600540161 0.303710997104645 0.366210997104645 0.0239257998764515 0.366210997104645 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1703.01c /DEF=nuclear exosome (RNase complex) --- --- --- --- --- --- SPBC1703.01c // ||SPBP4H10.22c|exosome subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.18497989841816 2.08770331102195 -2.1975997409967 1.65358721688053 -1.38629896916439 Max fold change below threshold 4 2.1975997409967 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1774026_at YGR055W.S1 High affinity methionine permease, integral membrane protein with 13 putative membrane-spanning regions; also involved in cysteine uptake 2.19750141179664 1418.25750732422 687.989105224609 MUP1 101 // sulfur amino acid transport // inferred from mutant phenotype 5887 // integral to plasma membrane // inferred from sequence similarity 102 // L-methionine porter activity // inferred from direct assay 669.2353515625 1365.86938476563 1470.64562988281 706.742858886719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR055W /GEN=MUP1 /DB_XREF=GI:6321492 /SEG=NC_001139:+599419,601143 /DEF=high affinity methionine permease /NOTE=Mup1p; go_component: integral to plasma membrane [goid GO:0005887] [evidence ISS] [pmid 8893857]; go_function: L-methionine porter activity [goid GO:0000102] [evidence IDA] [pmid 8893857]; go_process: sulfur amino acid transport [goid GO:0000101] [evidence IMP] [pmid 8893857] --- --- --- --- --- S0003287 // span:61-83,93-115,145-167,182-204,209-231,251-273,294-313,341-360,386-408,418-440,453-475,490-512 // numtm:12 S0003287 // MUP1 SGDID:S0003287, Chr VII from 599421-601145, Verified ORF // sgd // 11 // --- /// GENSCAN00000019384 // cdna:Genscan chromosome:SGD1:VII:599421:601145:1 // ensembl // 11 // --- /// GENEFINDER00000021712 // cdna:GeneFinder chromosome:SGD1:VII:599421:601145:1 // ensembl // 11 // --- /// YGR055W // cdna:known chromosome:SGD1:VII:599421:601145:1 gene:YGR055W // ensembl // 11 // --- --- No cerevisiae_gene 1.70439477336104 2.04094027844861 -1.21294724638707 2.19750141179664 1.05604531684802 Max fold change below threshold 4 2.19750141179664 Max fold change at or above threshold -0.905264889785794 0.737501765296984 0.9845797338135 -0.81681660932469 1053.12330627441 424.06146426683 0.402670287268651 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770404_at YBR246W.S1 Hypothetical protein 2.19667999524735 226.764663696289 469.984664916992 --- --- --- --- 397.203826904297 180.820068359375 272.709259033203 542.765502929688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR246W /GEN=ISW1 /DB_XREF=GI:6319723 /SEG=NC_001134:+711548,712711 /DEF=Hypothetical ORF /NOTE=Ybr246wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000450 // YBR246W SGDID:S0000450, Chr II from 711586-712749, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021335 // cdna:Genscan chromosome:SGD1:II:711586:712749:1 // ensembl // 11 // --- /// GENEFINDER00000022359 // cdna:GeneFinder chromosome:SGD1:II:711742:712749:1 // ensembl // 11 // --- /// YBR246W // cdna:known chromosome:SGD1:II:711586:712749:1 gene:YBR246W // ensembl // 11 // --- --- No cerevisiae_gene 1.12717501915974 -2.19667999524735 1.04745468409963 -1.45651023479161 1.36646594560747 Max fold change below threshold 4 2.19667999524735 Max fold change at or above threshold 0.31096146327172 -1.06704722263995 -0.481864195311948 1.23794995468018 348.374664306641 157.026411195489 0.450740043074069 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780014_at YFR049W.S1 Mitochondrial ribosomal protein of the small subunit, has similarity to human mitochondrial ribosomal protein MRP-S36 2.19600049622729 4357.07836914063 2102.35827636719 YMR31 6412 // protein biosynthesis // traceable author statement 5763 // mitochondrial small ribosomal subunit // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 2103.76440429688 4619.86767578125 4094.2890625 2100.9521484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR049W /GEN=YMR31 /DB_XREF=GI:14318574 /SEG=NC_001138:+248510,248881 /DEF=Mitochondrial ribosomal protein of the small subunit, has similarity to human mitochondrial ribosomal protein MRP-S36 /NOTE=Ymr31p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0001945 // YMR31 SGDID:S0001945, Chr VI from 248510-248881, Verified ORF // sgd // 11 // --- /// GENSCAN00000023285 // cdna:Genscan chromosome:SGD1:VI:248510:248881:1 // ensembl // 11 // --- /// YFR049W // cdna:known chromosome:SGD1:VI:248510:248881:1 gene:YFR049W // ensembl // 11 // --- --- No cerevisiae_gene -1.38919826170845 2.19600049622729 1.20890403050057 1.9461728005938 -1.00133856254721 Max fold change below threshold 4 2.19600049622729 Max fold change at or above threshold -0.853429541270512 1.05367946698691 0.655311196774857 -0.855561122491252 3229.71832275391 1319.32850224614 0.408496460187022 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772688_at SPAC15E1.03.S1 --- 2.19491932895565 --- --- --- --- 0.752884268760681 1.03716039657593 1.30761337280273 0.727533996105194 0.850341975688934 0.753906011581421 0.805419981479645 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC15E1.03 /GEN=rpl36a /DEF=60S ribosomal protein L36L42 --- --- --- --- --- --- SPAC15E1.03 // |rpl36a||60S ribosomal protein L36/L42|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.19491932895565 1.3775827701689 1.33203861327993 1.73680527945575 -1.03484410734233 Max fold change below threshold 0 2.19491932895565 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773980_at YMR066W.S1 Mitochondrial protein of unknown function 2.1939038286328 105.809776306152 255.069427490234 SOV1 --- 5739 // mitochondrion // inferred from direct assay --- 226.171295166016 108.528755187988 103.090797424316 283.967559814453 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR066W /GEN=KAR5 /DB_XREF=GI:6323711 /SEG=NC_001145:+401540,404236 /DEF=Synthesis Of Var /NOTE=Ymr066wp --- --- --- --- scop // a.4.5.Biotin repressor-like // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Biotin repressor-like // 2.0 --- S0004670 // SOV1 SGDID:S0004670, Chr XIII from 401540-404236, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018768 // cdna:Genscan chromosome:SGD1:XIII:402032:404236:1 // ensembl // 11 // --- /// GENEFINDER00000022049 // cdna:GeneFinder chromosome:SGD1:XIII:402182:404236:1 // ensembl // 11 // --- /// YMR066W // cdna:known chromosome:SGD1:XIII:401540:404236:1 gene:YMR066W // ensembl // 11 // --- --- No cerevisiae_gene -1.17037243970502 -2.08397576084101 1.11303724736989 -2.1939038286328 1.25554199796227 Max fold change below threshold 4 2.1939038286328 Max fold change at or above threshold 0.511685828764803 -0.804600892002838 -0.865445477590275 1.15836054082831 180.439601898193 89.3745550433114 0.495315629734862 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771047_at SPBC428.18.S1 --- 2.1926045044136 --- --- --- --- 0.242481559514999 0.39439645409584 0.271347016096115 0.531666159629822 0.994140982627869 0.994140982627869 0.995850026607513 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC428.18 /GEN=cdt1 /DEF=involved in DNA replication (initiation) (required) --- --- --- --- --- --- Z27248 // S.pombe mRNA for cdt1+ cell division cycle protein. // gb // 11 // --- /// SPBC428.18 // |cdt1||replication licensing factor Cdt1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.50295852024703 1.62650081467925 1.59183555831246 1.11904186297239 2.1926045044136 Max fold change below threshold 0 2.1926045044136 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773490_at YOL080C.S1 Putative RNA exonuclease possibly involved in pre-rRNA processing and ribosome assembly 2.19209661976154 29.3452138900757 67.7011318206787 REX4 6364 // rRNA processing // inferred from genetic interaction /// 42255 // ribosome assembly // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay 8408 // 3'-5' exonuclease activity // inferred from sequence similarity /// 8408 // 3'-5' exonuclease activity // inferred from mutant phenotype 57.025707244873 32.676197052002 26.0142307281494 78.3765563964844 0.0029296875 0.000244141003349796 0.00585938012227416 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL080C /GEN=REX4 /DB_XREF=GI:6324493 /SEG=NC_001147:-180557,181426 /DEF=RNA EXonuclease; member of 3'->5' exonuclease family. See Moser et al. 1997 Nucleic acids Res. 25:5110-5118 /NOTE=Rex4p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: 3'-5' exonuclease activity [goid GO:0008408] [evidence IMP,ISS] [pmid 10716935]; go_process: rRNA processing [goid GO:0006364] [evidence IGI] [pmid 12364601]; go_process: ribosome assembly [goid GO:0042255] [evidence IMP] [pmid 12364601] --- --- --- --- --- --- S0005440 // REX4 SGDID:S0005440, Chr XV from 181426-180557, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022630 // cdna:GeneFinder chromosome:SGD1:XV:180557:181426:-1 // ensembl // 11 // --- /// YOL080C // cdna:known chromosome:SGD1:XV:180557:181426:-1 gene:YOL080C // ensembl // 11 // --- --- No cerevisiae_gene 1.16738282636229 -1.74517576675525 1.30215900825657 -2.19209661976154 1.37440744154087 Max fold change below threshold 4 2.19209661976154 Max fold change at or above threshold 0.354961420932401 -0.66157510113652 -0.939697002700357 1.24631068290448 48.5231728553772 23.9534041957621 0.493648761740189 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1771346_at YDR354W.S1 Anthranilate phosphoribosyl transferase of the tryptophan biosynthetic pathway, catalyzes the phosphoribosylation of anthranilate, subject to the general control system of amino acid biosynthesis 2.19153990023029 147.035598754883 265.44499206543 TRP4 162 // tryptophan biosynthesis // inferred from mutant phenotype /// 162 // tryptophan biosynthesis // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4048 // anthranilate phosphoribosyltransferase activity // inferred from sequence similarity 251.2265625 114.634719848633 179.436477661133 279.663421630859 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR354W /GEN=TRP4 /DB_XREF=GI:6320561 /SEG=NC_001136:+1184736,1185878 /DEF=anthranilate phosphoribosyl transferase /NOTE=Trp4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: anthranilate phosphoribosyltransferase activity [goid GO:0004048] [evidence ISS] [pmid 2428012]; go_process: tryptophan biosynthesis [goid GO:0000162] [evidence IMP] [pmid 10790693]; go_process: tryptophan biosynthesis [goid GO:0000162] [evidence TAS] [pmid 2428012] --- --- --- --- --- --- S0002762 // TRP4 SGDID:S0002762, Chr IV from 1184738-1185880, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023639 // cdna:GeneFinder chromosome:SGD1:IV:1184738:1185880:1 // ensembl // 11 // --- /// GENSCAN00000025380 // cdna:Genscan chromosome:SGD1:IV:1184738:1185880:1 // ensembl // 11 // --- /// YDR354W // cdna:known chromosome:SGD1:IV:1184738:1185880:1 gene:YDR354W // ensembl // 11 // --- --- No cerevisiae_gene 1.53462953730914 -2.19153990023029 -1.05917929800515 -1.40008634684885 1.11319208784246 Max fold change below threshold 4 2.19153990023029 Max fold change at or above threshold 0.606140343678764 -1.23428411925933 -0.361151888193985 0.989295663774551 206.240295410156 74.217576109214 0.359859725576979 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775237_at YHR068W.S1 Deoxyhypusine synthase, catalyzes formation of deoxyhypusine, the first step in hypusine biosynthesis; triggers posttranslational hypusination of translation elongation factor eIF-5A and regulates its intracellular levels; tetrameric 2.19109718624648 485.5146484375 1011.89270019531 DYS1 8612 // hypusine biosynthesis from peptidyl-lysine // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 16765 // transferase activity, transferring alkyl or aryl (other than methyl) groups // inferred from direct assay 966.714111328125 441.200927734375 529.828369140625 1057.0712890625 0.000244141003349796 0.00415039015933871 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR068W /GEN=DYS1 /DB_XREF=GI:6321859 /SEG=NC_001140:+232134,233297 /DEF=Deoxyhypusine synthase, catalyzes formation of deoxyhypusine, the first step in hypusine biosynthesis; triggers posttranslational hypusination of translation elongation factor eIF-5A and regulates its intracellular levels; tetrameric /NOTE=Dys1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: transferase activity, transferring alkyl or aryl (other than methyl) groups [goid GO:0016765] [evidence IDA] [pmid 7629166]; go_process: hypusine biosynthesis from peptidyl-lysine [goid GO:0008612] [evidence IDA] [pmid 7629166] --- --- --- --- --- --- S0001110 // DYS1 SGDID:S0001110, Chr VIII from 232134-233297, Verified ORF // sgd // 11 // --- /// GENSCAN00000016612 // cdna:Genscan chromosome:SGD1:VIII:232134:233297:1 // ensembl // 11 // --- /// GENEFINDER00000020180 // cdna:GeneFinder chromosome:SGD1:VIII:232134:233297:1 // ensembl // 11 // --- /// YHR068W // cdna:known chromosome:SGD1:VIII:232134:233297:1 gene:YHR068W // ensembl // 11 // --- --- No cerevisiae_gene 1.76013199109722 -2.19109718624648 -1.27451716287503 -1.82457974626033 1.09346835499302 Max fold change below threshold 4 2.19109718624648 Max fold change at or above threshold 0.707215696169242 -0.997524577166346 -0.710021288181835 1.00033016917894 748.703674316406 308.2658348685 0.411732766170753 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776087_at YHR021W-A.S1 Non-essential protein of unknown function 2.19039139039618 15.3651003837585 22.4163866043091 ECM12 7047 // cell wall organization and biogenesis // inferred from mutant phenotype --- --- 20.0631294250488 20.8408145904541 9.88938617706299 24.7696437835693 0.0239257998764515 0.0107421996071935 0.018554700538516 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR021W-A /GEN=ECM12 /DB_XREF=GI:6321810 /SEG=NC_001140:+149217,149672 /DEF=Non-essential protein of unknown function /NOTE=Ecm12p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584] --- --- --- --- --- S0003531 // span:12-34,49-71 // numtm:2 S0003531 // ECM12 SGDID:S0003531, Chr VIII from 149217-149672, Uncharacterized ORF // sgd // 11 // --- /// YHR021W-A // cdna:known chromosome:SGD1:VIII:149217:149672:1 gene:YHR021W-A // ensembl // 11 // --- --- No cerevisiae_gene 2.19039139039618 1.03876190742379 -1.64454351341242 -2.02875376346232 1.23458525630824 Max fold change below threshold 4 2.19039139039618 Max fold change at or above threshold 0.184783835081665 0.307357506044512 -1.41873531741398 0.926593976287807 18.8907434940338 6.34463469435451 0.335859448642575 PPPPPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1773686_s_at YIL173W.S1 Putative membrane glycoprotein with strong similarity to Vth1p and Pep1p/Vps10p, may be involved in vacuolar protein sorting /// Putative membrane glycoprotein with strong similarity to Vth2p and Pep1p/Vps10p, may be involved in vacuolar protein sorting 2.19035903954612 171.52864074707 173.248039245605 VTH2 /// VTH1 6896 // Golgi to vacuole transport // inferred from sequence similarity /// 6896 // Golgi to vacuole transport // inferred from mutant phenotype 5768 // endosome // inferred from direct assay 5048 // signal sequence binding // inferred from sequence similarity 164.982040405273 152.723388671875 190.333892822266 181.514038085938 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL173W /GEN=VTH1 /DB_XREF=GI:6322020 /SEG=NC_001141:+11492,16141 /DEF=vps ten homolog /NOTE=Vth1p; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 14562095]; go_function: signal sequence binding [goid GO:0005048] [evidence ISS] [pmid 8662642]; go_process: Golgi to vacuole transport [goid GO:0006896] [evidence IMP] [pmid 8662642] --- --- --- --- --- S0001435 // span:1369-1391 // numtm:1 /// S0003758 // span:1369-1391 // numtm:1 S0001435 // VTH1 SGDID:S0001435, Chr IX from 11492-16141, Verified ORF // sgd // 11 // --- /// S0003758 // VTH2 SGDID:S0003758, Chr X from 11475-16124, Verified ORF // sgd // 11 // --- /// GENSCAN00000016344 // cdna:Genscan chromosome:SGD1:IX:11492:16141:1 // ensembl // 11 // --- /// GENEFINDER00000019056 // cdna:GeneFinder chromosome:SGD1:IX:11492:16141:1 // ensembl // 11 // --- /// GENSCAN00000023971 // cdna:Genscan chromosome:SGD1:X:11475:16124:1 // ensembl // 11 // --- /// GENEFINDER00000024275 // cdna:GeneFinder chromosome:SGD1:X:11475:16124:1 // ensembl // 11 // --- /// YIL173W // cdna:known chromosome:SGD1:IX:11492:16141:1 gene:YIL173W // ensembl // 11 // --- /// YJL222W // cdna:known chromosome:SGD1:X:11475:16124:1 gene:YJL222W // ensembl // 11 // --- --- No cerevisiae_gene 1.28183609666173 -1.08026702288368 2.19035903954612 1.15366431615657 1.1002048322354 Max fold change below threshold 4 2.19035903954612 Max fold change at or above threshold -0.440808266029749 -1.1704189100525 1.06808372074043 0.543143455341812 172.388339996338 16.8016350005665 0.097463871401763 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771280_at SPAC1142.02c.S1 --- 2.19007936732399 --- --- --- --- 8.67727279663086 9.23698043823242 9.8550271987915 3.96208143234253 0.10693359375 0.432372987270355 0.129638999700546 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1142.02c /DEF=conserved protein --- --- --- --- --- --- SPAC1142.02c // ||SPAC17G6.19c|conserved protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.56993790408136 1.06450271355061 -1.36374921845568 1.13572863614682 -2.19007936732399 Max fold change below threshold 4 2.19007936732399 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775996_at YGL146C.S1 Hypothetical protein 2.18967570282879 379.783172607422 264.132049560547 --- --- 16020 // membrane // non-traceable author statement --- 249.750396728516 271.215545654297 488.350799560547 278.513702392578 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL146C /GEN=RPL9A /DB_XREF=GI:6321292 /SEG=NC_001139:-228754,229689 /DEF=Hypothetical ORF /NOTE=Ygl146cp; go_component: membrane [goid GO:0016020] [evidence NAS] [pmid 9046099]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003114 // span:267-289 // numtm:1 S0003114 // YGL146C SGDID:S0003114, Chr VII from 229691-228756, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019239 // cdna:Genscan chromosome:SGD1:VII:228756:229691:-1 // ensembl // 11 // --- /// YGL146C // cdna:known chromosome:SGD1:VII:228756:229691:-1 gene:YGL146C // ensembl // 11 // --- --- No cerevisiae_gene -1.02969496884111 1.08594640571928 2.18967570282879 1.95535545071184 1.1151682081023 Max fold change below threshold 4 2.18967570282879 Max fold change at or above threshold -0.647026488553302 -0.454683935808501 1.49099783754536 -0.389287413183555 321.957611083984 111.59854446905 0.346624961259073 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771624_at YDR453C.S1 Stress inducible cytoplasmic thioredoxin peroxidase; cooperates with Tsa1p in the removal of reactive oxygen, nitrogen and sulfur species using thioredoxin as hydrogen donor; deletion enhances the mutator phenotype of tsa1 mutants 2.18900851485275 918.766876220703 1149.47467041016 TSA2 30503 // regulation of cell redox homeostasis // inferred from mutant phenotype /// 30503 // regulation of cell redox homeostasis // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 8379 // thioredoxin peroxidase activity // inferred from mutant phenotype /// 8379 // thioredoxin peroxidase activity // inferred from direct assay /// 8379 // thioredoxin peroxidase activity // inferred from sequence similarity 1067.8720703125 820.711364746094 1016.82238769531 1231.07727050781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR453C /GEN=TSA2 /DB_XREF=GI:6320661 /SEG=NC_001136:-1365060,1365650 /DEF=thioredoxin peroxidase /NOTE=Tsa2p; go_component: nucleus [goid GO:0005634] [evidence IDA,ISS] [pmid 10681558]; go_function: thioredoxin peroxidase activity [goid GO:0008379] [evidence IDA,IMP,ISS] [pmid 10681558]; go_process: regulation of cell redox homeostasis [goid GO:0030503] [evidence IDA,IMP] [pmid 10681558] --- --- --- --- --- --- S0002861 // TSA2 SGDID:S0002861, Chr IV from 1365652-1365062, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023904 // cdna:GeneFinder chromosome:SGD1:IV:1365062:1365652:-1 // ensembl // 11 // --- /// GENSCAN00000025454 // cdna:Genscan chromosome:SGD1:IV:1365062:1365652:-1 // ensembl // 11 // --- /// YDR453C // cdna:known chromosome:SGD1:IV:1365062:1365652:-1 gene:YDR453C // ensembl // 11 // --- --- No cerevisiae_gene -1.90953655254097 -1.30115423787615 2.18900851485275 -1.05020511274628 1.15283216476254 Max fold change below threshold 4 2.18900851485275 Max fold change at or above threshold 0.199606056077707 -1.2621088421609 -0.102303106468549 1.16480589255174 1034.12077331543 169.089543976216 0.163510441274773 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770108_at YKL047W.S1 Hypothetical protein 2.18897656845097 189.845733642578 235.18856048584 --- --- 5737 // cytoplasm // inferred from direct assay --- 209.393661499023 151.712493896484 227.978973388672 260.983459472656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL047W /GEN=ELM1 /DB_XREF=GI:6322804 /SEG=NC_001143:+349108,350658 /DEF=Hypothetical ORF /NOTE=Ykl047wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001530 // YKL047W SGDID:S0001530, Chr XI from 349108-350658, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018382 // cdna:Genscan chromosome:SGD1:XI:349108:350658:1 // ensembl // 11 // --- /// YKL047W // cdna:known chromosome:SGD1:XI:349108:350658:1 gene:YKL047W // ensembl // 11 // --- --- No cerevisiae_gene 2.18897656845097 -1.38020051032775 -1.34529777902912 1.08875775778788 1.24637707562066 Max fold change below threshold 4 2.18897656845097 Max fold change at or above threshold -0.068187033540745 -1.32739173543602 0.337538319990506 1.05804044898626 212.517147064209 45.8076177095916 0.215547866806962 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778611_at YGR285C.S1 Cytosolic ribosome-associated chaperone, contains a DnaJ domain; together with Ssz1p, acts as a chaperone for nascent polypeptide chains 2.18896848837021 1492.94470214844 1471.90826416016 ZUO1 6457 // protein folding // non-traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5829 // cytosol // non-traceable author statement /// 5840 // ribosome // non-traceable author statement 51082 // unfolded protein binding // non-traceable author statement 1407.61755371094 1392.72741699219 1593.16198730469 1536.19897460938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR285C /GEN=ZUO1 /DB_XREF=GI:6321724 /SEG=NC_001139:-1061857,1063158 /DEF=Cytosolic ribosome-associated chaperone, contains a DnaJ domain; together with Ssz1p, acts as a chaperone for nascent polypeptide chains /NOTE=Zuo1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytosol [goid GO:0005829] [evidence NAS] [pmid 9707440]; go_component: ribosome [goid GO:0005840] [evidence NAS] [pmid 9707440]; go_function: chaperone activity [goid GO:0003754] [evidence NAS] [pmid 9707440]; go_process: protein folding [goid GO:0006457] [evidence NAS] [pmid 9707440] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 6.0000002335232E-16 /// scop // a.4.1.Recombinase DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Recombinase DNA-binding domain // 1.5 --- S0003517 // ZUO1 SGDID:S0003517, Chr VII from 1063159-1061858, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019561 // cdna:Genscan chromosome:SGD1:VII:1061858:1063159:-1 // ensembl // 11 // --- /// GENEFINDER00000021561 // cdna:GeneFinder chromosome:SGD1:VII:1061858:1063159:-1 // ensembl // 11 // --- /// YGR285C // cdna:known chromosome:SGD1:VII:1061858:1063159:-1 gene:YGR285C // ensembl // 11 // --- --- No cerevisiae_gene 2.18896848837021 -1.01069135032245 -1.07523951888378 1.13181452100011 1.09134684386356 Max fold change below threshold 4 2.18896848837021 Max fold change at or above threshold -0.763566728044148 -0.915548758251843 1.13026542702301 0.548850059272979 1482.4264831543 97.9730083773819 0.0660896236614146 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775628_at YBR018C.S1 Galactose-1-phosphate uridyl transferase, synthesizes glucose-1-phosphate and UDP-galactose from UDP-D-glucose and alpha-D-galactose-1-phosphate in the second step of galactose catabolism 2.18894630984734 30.7134456634521 28.2913932800293 GAL7 6012 // galactose metabolism // traceable author statement 5737 // cytoplasm // inferred from direct assay 3982 // UTP-hexose-1-phosphate uridylyltransferase activity // inferred from sequence similarity 22.4657249450684 33.0061340332031 28.4207572937012 34.1170616149902 0.274170011281967 0.0805663987994194 0.0952147990465164 0.0239257998764515 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR018C /GEN=GAL7 /DB_XREF=GI:6319492 /SEG=NC_001134:-274389,275489 /DEF=Galactose-1-phosphate uridyl transferase, synthesizes glucose-1-phosphate and UDP-galactose from UDP-D-glucose and alpha-D-galactose-1-phosphate in the second step of galactose catabolism /NOTE=Gal7p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10993714]; go_function: UTP-hexose-1-phosphate uridylyltransferase activity [goid GO:0003982] [evidence ISS] [pmid 2851900]; go_process: galactose metabolism [goid GO:0006012] [evidence TAS] --- --- --- --- --- --- S0000222 // GAL7 SGDID:S0000222, Chr II from 275527-274427, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021153 // cdna:Genscan chromosome:SGD1:II:274427:275527:-1 // ensembl // 11 // --- /// GENEFINDER00000022268 // cdna:GeneFinder chromosome:SGD1:II:274427:275527:-1 // ensembl // 11 // --- /// YBR018C // cdna:known chromosome:SGD1:II:274427:275527:-1 gene:YBR018C // ensembl // 11 // --- --- No cerevisiae_gene -1.31672301083438 1.46917734076721 2.18894630984734 1.26507189788861 1.51862722874116 Max fold change below threshold 4 2.18894630984734 Max fold change at or above threshold -1.3277885056375 0.661133136319975 -0.204104157362494 0.870759526680015 29.5024194717407 5.29955975428023 0.179631360721329 APAPAP No 4 0 AAAP 3 1 0 No No x = 1
1774134_at YAR015W.S1 N-succinyl-5-aminoimidazole-4-carboxamide ribotide (SAICAR) synthetase, required for 'de novo' purine nucleotide biosynthesis; red pigment accumulates in mutant cells deprived of adenine 2.18884480120926 728.636810302734 1375.06988525391 ADE1 6144 // purine base metabolism // inferred from mutant phenotype /// 6144 // purine base metabolism // traceable author statement /// 6164 // purine nucleotide biosynthesis // traceable author statement /// 6189 // 'de novo' IMP biosynthesis // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4639 // phosphoribosylaminoimidazolesuccinocarboxamide synthase activity // inferred from direct assay 1315.12646484375 600.831298828125 856.442321777344 1435.01330566406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR015W /GEN=ADE1 /DB_XREF=GI:6319326 /SEG=NC_001133:+169372,170292 /DEF=N-succinyl-5-aminoimidazole-4-carboxamide ribotide (SAICAR) synthetase, required for 'de novo' purine nucleotide biosynthesis; red pigment accumulates in mutant cells deprived of adenine /NOTE=Ade1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [goid GO:0004639] [evidence IDA] [pmid 1756975]; go_process: purine base metabolism [goid GO:0006144] [evidence IMP,TAS] [pmid 8939809]; go_process: purine nucleotide biosynthesis [goid GO:0006164] [evidence TAS] --- --- --- --- --- --- S0000070 // ADE1 SGDID:S0000070, Chr I from 169370-170290, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018248 // cdna:GeneFinder chromosome:SGD1:I:169370:170290:1 // ensembl // 11 // --- /// GENSCAN00000020387 // cdna:Genscan chromosome:SGD1:I:169370:170290:1 // ensembl // 11 // --- /// YAR015W // cdna:known chromosome:SGD1:I:169370:170290:1 gene:YAR015W // ensembl // 11 // --- --- No cerevisiae_gene -1.40759609505842 -2.18884480120926 1.81388155918643 -1.53556921628361 1.09115993330311 Max fold change below threshold 4 2.18884480120926 Max fold change at or above threshold 0.674003494071618 -1.15465809910331 -0.500270273595938 0.980924878627629 1051.85334777832 390.610908372316 0.371354912923316 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780020_at SPBC1685.09.S1 --- 2.18824056048739 --- --- --- --- 5.39214992523193 2.47222256660461 2.54064035415649 9.77647399902344 0.5 0.725830018520355 0.5 0.0239257998764515 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1685.09 /GEN=rps29 /DEF=40S ribosomal protein S29 --- --- --- --- --- --- L37753 // Schizosaccharomyces pombe Psi protein mRNA, complete cds. // gb // 10 // --- /// SPBC1685.09 // |rps29||40S ribosomal protein S29|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.18824056048739 -2.18109404795119 -1.36315533503372 -2.12235860790386 1.8130938743516 Max fold change below threshold 3 2.18824056048739 Max fold change at or above threshold APAAAP No 4 0 AAAP 3 1 0 No No x = 1
1779115_at YEL059C-A.S1 Protein whose overexpression suppresses the imp1 mutation, may be required for the function of the Imp1p mitochondrial inner membrane peptidase and/or the protein sorting machinery 2.18823480051113 436.404266357422 259.275810241699 SOM1 6508 // proteolysis and peptidolysis // inferred from genetic interaction /// 6508 // proteolysis and peptidolysis // inferred from mutant phenotype /// 6508 // proteolysis and peptidolysis // inferred from physical interaction /// 6508 // proteolysis and peptidolysis // inferred from sequence similarity 5743 // mitochondrial inner membrane // inferred from direct assay /// 42720 // mitochondrial inner membrane peptidase complex // inferred from physical interaction --- 246.57551574707 416.8056640625 456.002868652344 271.976104736328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL059C-A /GEN=SOM1 /DB_XREF=GI:7839166 /SEG=NC_001137:-42400,42624 /DEF=high copy suppressor of imp1 mutation, may be required for the function of the Imp1 peptidase and/or the protein sorting machinery /NOTE=Som1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 9604886]; go_component: mitochondrial inner membrane peptidase complex [goid GO:0042720] [evidence IPI] [pmid 10821182]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence IGI,IMP,IPI] [pmid 10821182]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence ISS] [pmid 8879245] --- --- --- --- --- --- S0002954 // SOM1 SGDID:S0002954, Chr V from 42624-42400, reverse complement, Verified ORF // sgd // 11 // --- /// YEL059C-A // cdna:known chromosome:SGD1:V:42400:42624:-1 gene:YEL059C-A // ensembl // 11 // --- --- No cerevisiae_gene 2.18823480051113 1.69037733855963 -1.08582365999705 1.84934366768231 1.10301342739687 Max fold change below threshold 4 2.18823480051113 Max fold change at or above threshold -0.973437937092159 0.662954357367823 1.03975014935844 -0.729266569634101 347.840038299561 104.027713215068 0.299067679855413 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769386_at SPAC343.06c.S1 --- 2.18812277237013 --- --- --- --- 0.388762176036835 0.367015898227692 0.29568549990654 0.327933728694916 0.99804699420929 0.962401986122131 0.976073980331421 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC343.06c /DEF=scramblase --- --- --- --- --- --- SPAC343.06c // |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.01504611760153 -1.05925159622282 2.18812277237013 -1.31478268687411 -1.18549006100714 Max fold change below threshold 0 2.18812277237013 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771329_at YOR257W.S1 Component of the spindle pole body (SPB) half-bridge, required for SPB duplication in mitosis and meiosis II; homolog of mammalian centrin; interacts with Kar1p 2.18788463176128 810.198272705078 397.866470336914 CDC31 7020 // microtubule nucleation // inferred from physical interaction /// 7103 // spindle pole body duplication in nuclear envelope // inferred from mutant phenotype 5643 // nuclear pore // traceable author statement /// 5825 // half bridge of spindle pole body // traceable author statement 5200 // structural constituent of cytoskeleton // inferred from physical interaction 399.572906494141 746.177124023438 874.219421386719 396.160034179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR257W /GEN=CDC31 /DB_XREF=GI:6324831 /SEG=NC_001147:+811006,811491 /DEF=Component of the spindle pole body (SPB) half-bridge, required for SPB duplication in mitosis and meiosis II; homolog of mammalian centrin; interacts with Kar1p /NOTE=Cdc31p; go_component: half bridge of spindle pole body [goid GO:0005825] [evidence TAS] [pmid 9153752]; go_component: nuclear pore [goid GO:0005643] [evidence TAS] [pmid 11343909]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9153752]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752]; go_process: spindle pole body duplication (sensu Saccharomyces) [goid GO:0007103] [evidence IMP] [pmid 9153752] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 4.19999980926514 --- S0005783 // CDC31 SGDID:S0005783, Chr XV from 811006-811491, Verified ORF // sgd // 11 // --- /// YOR257W // cdna:known chromosome:SGD1:XV:811006:811491:1 gene:YOR257W // ensembl // 11 // --- GENSCAN00000017687 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.02524692693055 1.86743673531423 1.49868210266318 2.18788463176128 -1.00861488292609 Max fold change below threshold 4 2.18788463176128 Max fold change at or above threshold -0.83885849912517 0.583193024236148 1.10852634336908 -0.852860868480053 604.032371520996 243.735344208925 0.403513711682674 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775578_s_at YDR342C.S1 High-affinity glucose transporter of the major facilitator superfamily, nearly identical to Hxt6p, expressed at high basal levels relative to other HXTs, expression repressed by high glucose levels /// High-affinity glucose transporter of the major facilitator superfamily, nearly identical to Hxt7p, expressed at high basal levels relative to other HXTs, repression of expression by high glucose requires SNF3 2.18773883915507 5829.32006835938 3103.982421875 HXT7 /// HXT6 8645 // hexose transport // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay /// 5886 // plasma membrane // inferred from sequence similarity 5353 // fructose transporter activity // traceable author statement /// 5355 // glucose transporter activity // traceable author statement /// 5355 // glucose transporter activity // inferred from direct assay /// 15578 // mannose transporter activity // traceable author statement 3216.15063476563 7036.09765625 4622.54248046875 2991.81420898438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR342C /GEN=HXT7 /DB_XREF=GI:6320549 /SEG=NC_001136:-1154206,1155918 /DEF=High-affinity glucose transporter of the major facilitator superfamily, nearly identical to Hxt6p, expressed at high basal levels relative to other HXTs, expression repressed by high glucose levels /NOTE=Hxt7p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 11904149]; go_function: fructose transporter activity [goid GO:0005353] [evidence TAS] [pmid 10618490]; go_function: glucose transporter activity [goid GO:0005355] [evidence TAS] [pmid 10618490]; go_function: glucose transporter activity [goid GO:0005355] [evidence IDA] [pmid 12702270]; go_function: mannose transporter activity [goid GO:0015578] [evidence TAS] [pmid 10618490]; go_process: hexose transport [goid GO:0008645] [evidence TAS] [pmid 10618490] --- --- --- --- --- S0002750 // span:59-81,117-134,144-163,170-192,202-224,237-256,359-381,388-410,430-452,464-486,490-512 // numtm:11 /// S0002751 // span:59-81,117-134,144-163,170-192,202-224,237-256,359-381,388-410,430-452,464-486,490-512 // numtm:11 S0002750 // HXT7 SGDID:S0002750, Chr IV from 1155920-1154208, reverse complement, Verified ORF // sgd // 11 // --- /// S0002751 // HXT6 SGDID:S0002751, Chr IV from 1161312-1159600, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023749 // cdna:GeneFinder chromosome:SGD1:IV:1154208:1156523:-1 // ensembl // 11 // --- /// GENSCAN00000025369 // cdna:Genscan chromosome:SGD1:IV:1154208:1155710:-1 // ensembl // 11 // --- /// GENEFINDER00000023811 // cdna:GeneFinder chromosome:SGD1:IV:1159600:1161312:-1 // ensembl // 11 // --- /// GENSCAN00000025370 // cdna:Genscan chromosome:SGD1:IV:1159600:1161312:-1 // ensembl // 11 // --- /// YDR342C // cdna:known chromosome:SGD1:IV:1154208:1155920:-1 gene:YDR342C // ensembl // 11 // --- /// YDR343C // cdna:known chromosome:SGD1:IV:1159600:1161312:-1 gene:YDR343C // ensembl // 11 // --- --- No cerevisiae_gene 1.29328622712836 2.18773883915507 1.11161228276506 1.43729041497635 -1.07498340809652 Max fold change below threshold 4 2.18773883915507 Max fold change at or above threshold -0.672751356242563 1.38232524124575 0.0838672441588075 -0.793441129161998 4466.65124511719 1858.78571443666 0.416147492255776 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779307_at YBR177C.S1 Possible serine hydrolase, may be involved in lipid metabolism, null mutant slightly temperature sensitive at 37C 2.18770498402543 4079.79919433594 2601.38415527344 EHT1 6629 // lipid metabolism // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5811 // lipid particle // inferred from direct assay 17171 // serine hydrolase activity // inferred from direct assay 2719.92724609375 4492.533203125 3667.06518554688 2482.84106445313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR177C /GEN=EHT1 /DB_XREF=GI:6319655 /SEG=NC_001134:-584764,586119 /DEF=alcohol acyl transferase /NOTE=Eht1p; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 10515935]; go_function: serine hydrolase activity [goid GO:0017171] [evidence IDA] [pmid 14645503]; go_process: lipid metabolism [goid GO:0006629] [evidence IMP] [pmid 10515935] --- --- --- --- --- --- S0000381 // EHT1 SGDID:S0000381, Chr II from 586157-584802, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021283 // cdna:Genscan chromosome:SGD1:II:584802:586157:-1 // ensembl // 11 // --- /// GENEFINDER00000022119 // cdna:GeneFinder chromosome:SGD1:II:584802:586157:-1 // ensembl // 11 // --- /// YBR177C // cdna:known chromosome:SGD1:II:584802:586157:-1 gene:YBR177C // ensembl // 11 // --- --- No cerevisiae_gene -2.18770498402543 1.6517107983594 1.04720127473538 1.34822179189291 -1.095489874497 Max fold change below threshold 4 2.18770498402543 Max fold change at or above threshold -0.672609941178532 1.24835142431771 0.353797186851385 -0.929538669990558 3340.59167480469 922.770227902703 0.276229577790783 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770734_at SPCC306.09c.S1 --- 2.18758219092719 --- --- --- --- 7.5787672996521 12.6149806976318 14.398175239563 6.12110662460327 0.24609400331974 0.149657994508743 0.0375977009534836 0.194580003619194 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC306.09c /GEN=cap1 /DEF=actin cortical patch component (predicted) --- --- --- --- --- --- L16577 // Schizosaccharomyces pombe adenylyl cyclase-associated protein (cap) mRNA, complete cds. // gb // 11 // --- /// SPCC306.09c // |cap1|cap|adenylyl cyclase-associated protein |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.18758219092719 1.66451616718868 -1.85567113702951 1.89980437058992 -1.23813678872867 Max fold change below threshold 4 2.18758219092719 Max fold change at or above threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1775146_at YPR152C.S1 Hypothetical protein 2.18683599265989 1053.71923828125 591.122802734375 --- --- 5634 // nucleus // inferred from direct assay --- 546.081665039063 913.247436523438 1194.19104003906 636.163940429688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR152C /GEN=NCE102 /DB_XREF=GI:6325410 /SEG=NC_001148:-832055,833452 /DEF=Hypothetical ORF /NOTE=Ypr152cp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006356 // YPR152C SGDID:S0006356, Chr XVI from 833454-832057, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017297 // cdna:Genscan chromosome:SGD1:XVI:832057:833454:-1 // ensembl // 11 // --- /// YPR152C // cdna:known chromosome:SGD1:XVI:832057:833454:-1 gene:YPR152C // ensembl // 11 // --- GENEFINDER00000020938 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 1.2999131999747 1.6723642176452 1.01492332291867 2.18683599265989 1.16496117917488 Max fold change below threshold 4 2.18683599265989 Max fold change at or above threshold -0.943191706231647 0.3100055080731 1.26891227075727 -0.635726072598724 822.421020507813 292.983233040518 0.356244825624243 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771651_at YER100W.S1 Ubiquitin-conjugating enzyme involved in ER-associated protein degradation; located at the cytosolic side of the ER membrane; tail region contains a transmembrane segment at the C-terminus; substrate of the ubiquitin-proteasome pathway 2.18674108921324 588.201843261719 560.861373901367 UBC6 209 // protein polyubiquitination // traceable author statement /// 6513 // protein monoubiquitination // traceable author statement 5635 // nuclear membrane // traceable author statement /// 5789 // endoplasmic reticulum membrane // traceable author statement 4840 // ubiquitin conjugating enzyme activity // traceable author statement 511.030975341797 524.192504882813 652.211181640625 610.691772460938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER100W /GEN=UBC6 /DB_XREF=GI:6320947 /SEG=NC_001137:+359558,360310 /DEF=Ubiquitin-conjugating enzyme involved in ER-associated protein degradation; located at the cytosolic side of the ER membrane; tail region contains a transmembrane segment at the C-terminus; substrate of the ubiquitin-proteasome pathway /NOTE=Ubc6p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence TAS] [pmid 8982460]; go_component: nuclear membrane [goid GO:0005635] [evidence TAS] [pmid 8982460]; go_function: ubiquitin conjugating enzyme activity [goid GO:0004840] [evidence TAS] [pmid 8982460]; go_process: protein monoubiquitination [goid GO:0006513] [evidence TAS] [pmid 8982460]; go_process: protein polyubiquitination [goid GO:0000209] [evidence TAS] [pmid 8982460] --- --- --- --- --- S0000902 // span:231-249 // numtm:1 S0000902 // UBC6 SGDID:S0000902, Chr V from 359558-360310, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019740 // cdna:GeneFinder chromosome:SGD1:V:359558:360310:1 // ensembl // 11 // --- /// YER100W // cdna:known chromosome:SGD1:V:359558:360310:1 gene:YER100W // ensembl // 11 // --- --- No cerevisiae_gene 2.18674108921324 1.02575485670357 1.55292654493937 1.27626545769442 1.19501909263423 Max fold change below threshold 4 2.18674108921324 Max fold change at or above threshold -0.932622491748569 -0.739321451278292 1.14086605578889 0.53107788723797 574.531608581543 68.0882498562618 0.118510885805508 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773136_at YOR291W.S1 Hypothetical protein 2.18662489105218 849.161865234375 1730.74163818359 --- --- 16020 // membrane // inferred from sequence similarity --- 1733.83325195313 792.926696777344 905.397033691406 1727.65002441406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR291W /GEN=SNF2 /DB_XREF=GI:6324865 /SEG=NC_001147:+861172,865590 /DEF=Hypothetical ORF /NOTE=Yor291wp; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 9153758]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- ec // A8A2_HUMAN // (Q9NTI2) Potential phospholipid-transporting ATPase IB (EC 3.6.3.1) (ATPase class I type 8A member 2) (ML-1) // 0.0 --- S0005817 // span:320-339,489-511,515-534,695-717,732-754,1235-1257,1272-1289,1310-1332,1356-1375,1388-1405,1420-1442 // numtm:11 S0005817 // YOR291W SGDID:S0005817, Chr XV from 861172-865590, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017739 // cdna:Genscan chromosome:SGD1:XV:861172:865590:1 // ensembl // 11 // --- /// GENEFINDER00000022587 // cdna:GeneFinder chromosome:SGD1:XV:861295:865590:1 // ensembl // 11 // --- /// YOR291W // cdna:known chromosome:SGD1:XV:861172:865590:1 gene:YOR291W // ensembl // 11 // --- --- No cerevisiae_gene -1.78639023969986 -2.18662489105218 -1.01372518022119 -1.91499771639862 -1.00357898153659 Max fold change below threshold 4 2.18662489105218 Max fold change at or above threshold 0.868561839315145 -0.972550096500299 -0.752474597420606 0.856462854605761 1289.95175170898 511.053422050108 0.396180261295077 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777211_at YLR176C.S1 Protein involved in DNA damage and replication checkpoint pathway; recruits repressors Tup1p and Cyc8p to promoters of DNA damage-inducible genes; similar to a family of mammalian DNA binding RFX1-4 proteins 2.18623803339697 830.287139892578 1559.93817138672 RFX1 77 // DNA damage checkpoint // traceable author statement /// 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 16566 // specific transcriptional repressor activity // inferred from direct assay 1586.97009277344 934.683471679688 725.890808105469 1532.90625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR176C /GEN=RFX1 /DB_XREF=GI:6323205 /SEG=NC_001144:-507799,510234 /DEF=DNA binding protein, homologous to a family of mammalian RFX1-4 proteins which have a novel highly conserved DNA binding domain /NOTE=Rfx1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: specific transcriptional repressor activity [goid GO:0016566] [evidence IDA] [pmid 9741624]; go_process: DNA damage response, signal transduction resulting in cell cycle arrest [goid GO:0000077] [evidence TAS] [pmid 9741624]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IDA] [pmid 9741624] --- --- --- --- --- --- S0004166 // RFX1 SGDID:S0004166, Chr XII from 510234-507799, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017956 // cdna:Genscan chromosome:SGD1:XII:507799:510114:-1 // ensembl // 11 // --- /// GENEFINDER00000024588 // cdna:GeneFinder chromosome:SGD1:XII:507799:509955:-1 // ensembl // 11 // --- /// YLR176C // cdna:known chromosome:SGD1:XII:507799:510234:-1 gene:YLR176C // ensembl // 11 // --- --- No cerevisiae_gene -1.74290101261655 -1.69786900149368 -1.1141923727483 -2.18623803339697 -1.03526885142091 Max fold change below threshold 4 2.18623803339697 Max fold change at or above threshold 0.9105176080117 -0.605131701391449 -1.09028109143118 0.784895184810928 1195.11265563965 430.367775082889 0.360106449423002 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
RPTR-Sc-J01347-1_at AFFX-Sc-J01347-1 --- 2.18598524958812 --- --- --- --- 105.406051635742 164.23176574707 48.2190132141113 123.558906555176 0.000244141003349796 0.000244141003349796 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL J01347 /FEA=CDS_1 /DB_XREF=AAB59340.1 GI:172191 /NOTE=recombinase (FLP) --- --- --- --- --- --- AFFX-Sc-J01347-1 // --- // affx // --- // --- --- No No 1.08316083736701 1.55808668666023 -1.14866099399654 -2.18598524958812 1.17221833697144 Max fold change below threshold 4 2.18598524958812 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777854_at YGL248W.S1 Low-affinity cyclic AMP phosphodiesterase, controls glucose and intracellular acidification-induced cAMP signaling, target of the cAMP-protein kinase A (PKA) pathway; glucose induces transcription and inhibits translation 2.18584748175598 1317.56958007813 1936.91662597656 PDE1 19933 // cAMP-mediated signaling // inferred from mutant phenotype --- 4115 // cAMP-specific phosphodiesterase activity // traceable author statement 1984.89306640625 1259.94665527344 1375.19250488281 1888.94018554688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL248W /GEN=PDE1 /DB_XREF=GI:6321189 /SEG=NC_001139:+35653,36762 /DEF=3',5'-Cyclic-nucleotide phosphodiesterase, low affinity /NOTE=Pde1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: cAMP-specific phosphodiesterase activity [goid GO:0004115] [evidence TAS] [pmid 9880329]; go_process: cAMP-mediated signaling [goid GO:0019933] [evidence IMP] [pmid 9880329] --- --- --- --- --- --- S0003217 // PDE1 SGDID:S0003217, Chr VII from 35653-36762, Verified ORF // sgd // 11 // --- /// GENSCAN00000019165 // cdna:Genscan chromosome:SGD1:VII:35653:36762:1 // ensembl // 11 // --- /// YGL248W // cdna:known chromosome:SGD1:VII:35653:36762:1 gene:YGL248W // ensembl // 11 // --- --- No cerevisiae_gene -2.18584748175598 -1.5753786544046 -1.21579389776329 -1.44335651871182 -1.05079720448194 Max fold change below threshold 4 2.18584748175598 Max fold change at or above threshold 0.985850285081224 -1.01244049994181 -0.694769130375743 0.721359345236328 1627.24310302734 362.783242842436 0.222943481626998 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771957_at YGR031W.S1 Hypothetical protein 2.18569297514283 973.778625488281 649.445861816406 --- --- 5739 // mitochondrion // inferred from direct assay --- 583.617431640625 671.94873046875 1275.60852050781 715.274291992188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR031W /GEN=POP6 /DB_XREF=GI:6321468 /SEG=NC_001139:+546443,547471 /DEF=Hypothetical ORF /NOTE=Ygr031wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003263 // YGR031W SGDID:S0003263, Chr VII from 546445-547473, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019363 // cdna:Genscan chromosome:SGD1:VII:546445:547473:1 // ensembl // 11 // --- /// YGR031W // cdna:known chromosome:SGD1:VII:546445:547473:1 gene:YGR031W // ensembl // 11 // --- YGR031C-A // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene 1.35063231620872 1.1513513717022 1.50241560646175 2.18569297514283 1.22558760793258 Max fold change below threshold 4 2.18569297514283 Max fold change at or above threshold -0.7257631855535 -0.444583082129554 1.47701350308918 -0.30666723540613 811.612243652344 314.144911935482 0.387062805412835 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776030_at YHR150W.S1 Peroxisomal integral membrane protein, involved in regulation of peroxisome size and number; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those mediated by Pex30p, Pex31p, and Pex32p 2.18544010806575 411.348495483398 645.408782958984 PEX28 7031 // peroxisome organization and biogenesis // inferred from genetic interaction /// 7031 // peroxisome organization and biogenesis // inferred from direct assay /// 7031 // peroxisome organization and biogenesis // inferred from mutant phenotype 5778 // peroxisomal membrane // inferred from direct assay --- 620.818054199219 434.245361328125 388.451629638672 669.99951171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR150W /GEN=PEX28 /DB_XREF=GI:6321944 /SEG=NC_001140:+397252,398991 /DEF=Peroxisomal integral membrane protein, involved in regulation of peroxisome size and number; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those mediated by Pex30p, Pex31p, and Pex32p /NOTE=Pex28p; go_component: peroxisomal membrane [goid GO:0005778] [evidence IDA] [pmid 12707309]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence IDA,IGI,IMP] [pmid 12707309] --- --- --- --- --- S0001193 // span:246-268,393-415 // numtm:2 S0001193 // PEX28 SGDID:S0001193, Chr VIII from 397253-398992, Verified ORF // sgd // 11 // --- /// GENSCAN00000016678 // cdna:Genscan chromosome:SGD1:VIII:397253:398992:1 // ensembl // 11 // --- /// GENEFINDER00000020163 // cdna:GeneFinder chromosome:SGD1:VIII:397253:398992:1 // ensembl // 11 // --- /// YHR150W // cdna:known chromosome:SGD1:VIII:397253:398992:1 gene:YHR150W // ensembl // 11 // --- --- No cerevisiae_gene -2.18544010806575 -1.42964809641367 1.14472992777946 -1.59818625236992 1.07922040473351 Max fold change below threshold 4 2.18544010806575 Max fold change at or above threshold 0.670378130895266 -0.682662162065807 -1.01476201648388 1.02704604765442 528.378639221191 137.89145367045 0.26097090880452 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774194_at YPL177C.S1 Homeodomain-containing transcriptional repressor of PTR2, which encodes a major peptide transporter; imported peptides activate ubiquitin-dependent proteolysis, resulting in degradation of Cup9p and de-repression of PTR2 transcription 2.18463245258525 1190.04022216797 2558.87451171875 CUP9 6367 // transcription initiation from RNA polymerase II promoter // inferred from sequence similarity /// 6878 // copper ion homeostasis // inferred from mutant phenotype 5634 // nucleus // inferred from sequence similarity 3704 // specific RNA polymerase II transcription factor activity // inferred from sequence similarity 2568.67041015625 1175.79064941406 1204.28979492188 2549.07861328125 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL177C /GEN=CUP9 /DB_XREF=GI:6325080 /SEG=NC_001148:-213041,213961 /DEF=Homeodomain-containing transcriptional repressor of PTR2, which encodes a major peptide transporter; imported peptides activate ubiquitin-dependent proteolysis, resulting in degradation of Cup9p and de-repression of PTR2 transcription /NOTE=Cup9p; go_component: nucleus [goid GO:0005634] [evidence ISS] [pmid 7969120]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence ISS] [pmid 7969120]; go_process: copper ion homeostasis [goid GO:0006878] [evidence IMP] [pmid 7969120]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence ISS] [pmid 7969120] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 2.00000006274879E-22 --- S0006098 // CUP9 SGDID:S0006098, Chr XVI from 213961-213041, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017051 // cdna:Genscan chromosome:SGD1:XVI:213041:213961:-1 // ensembl // 11 // --- /// GENEFINDER00000020890 // cdna:GeneFinder chromosome:SGD1:XVI:213041:213961:-1 // ensembl // 11 // --- /// YPL177C // cdna:known chromosome:SGD1:XVI:213041:213961:-1 gene:YPL177C // ensembl // 11 // --- --- No cerevisiae_gene -1.01444561475095 -2.18463245258525 -1.11925708200757 -2.13293380130559 -1.00768583470628 Max fold change below threshold 4 2.18463245258525 Max fold change at or above threshold 0.878280471107161 -0.883915016892513 -0.847859452700128 0.853493998485479 1874.45736694336 790.42295263353 0.421680944348421 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769468_at YJR082C.S1 Esa1p-associated factor, subunit of the NuA4 acetyltransferase complex 2.18443467144273 539.937469482422 1075.56262207031 EAF6 --- 5634 // nucleus // inferred from direct assay /// 43189 // H4/H2A histone acetyltransferase complex // inferred from physical interaction --- 1023.7265625 610.962219238281 468.912719726563 1127.39868164063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR082C /GEN=EAF6 /DB_XREF=GI:6322541 /SEG=NC_001142:-581828,582169 /DEF=Esa1p-associated factor, subunit of the NuA4 acetyltransferase complex /NOTE=Eaf6p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003842 // EAF6 SGDID:S0003842, Chr X from 582169-581828, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YJR082C // cdna:known chromosome:SGD1:X:581828:582169:-1 gene:YJR082C // ensembl // 11 // --- --- No cerevisiae_gene -2.18443467144273 -1.67559716503638 -1.24364697932057 -2.18319213668797 1.10126934568099 Max fold change below threshold 4 2.18443467144273 Max fold change at or above threshold 0.680310131966346 -0.619867170155386 -1.06731263887841 1.00686967706745 807.750045776367 317.467735045164 0.393027195362188 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774371_at YPL143W.S1 N-terminally acetylated ribosomal protein L37 of the large (60S) ribosomal subunit, nearly identical to Rpl33Bp and has similarity to rat L35a; rpl33a null mutant exhibits slow growth while rpl33a rpl33b double null mutant is inviable 2.18413482162182 2496.66125488281 4572.22644042969 RPL33A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 5178.552734375 2622.33666992188 2370.98583984375 3965.90014648438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL143W /GEN=RPL33A /DB_XREF=GI:6325114 /SEG=NC_001148:+282121,282969 /DEF=N-terminally acetylated ribosomal protein L37 of the large (60S) ribosomal subunit, nearly identical to Rpl33Bp and has similarity to rat L35a; rpl33a null mutant exhibits slow growth while rpl33a rpl33b double null mutant is inviable /NOTE=Rpl33ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0006064 // RPL33A SGDID:S0006064, Chr XVI from 282121-282139,282665-282969, intron sequence removed, Verified ORF // sgd // 11 // --- /// YPL143W // cdna:known chromosome:SGD1:XVI:282121:282969:1 gene:YPL143W // ensembl // 11 // --- GENSCAN00000017079 // ensembl // 9 // Negative Strand Matching Probes /// YPL142C // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene -1.2352807711481 -1.97478561535323 -1.50653215136693 -2.18413482162182 -1.30576982352054 Max fold change below threshold 4 2.18413482162182 Max fold change at or above threshold 1.26409807839167 -0.701287451199397 -0.894542352909725 0.331731725717455 3534.44384765625 1300.61813622134 0.367983816487509 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775118_at YDR088C.S1 Protein involved in 3' splice site choices, acts in concert with Prp18p during the 2nd step of splicing 2.18406005526884 1267.14886474609 678.836639404297 SLU7 398 // nuclear mRNA splicing, via spliceosome // inferred from direct assay 5681 // spliceosome complex // inferred from direct assay 5515 // protein binding // inferred from mutant phenotype /// 31202 // RNA splicing factor activity, transesterification mechanism // traceable author statement 630.750366210938 1377.5966796875 1156.70104980469 726.922912597656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR088C /GEN=SLU7 /DB_XREF=GI:6320293 /SEG=NC_001136:-618491,619639 /DEF=Involved in 3' splice site choices and acts in concert with Prp18 during the 2nd step of splicing. /NOTE=Slu7p; go_component: spliceosome complex [goid GO:0005681] [evidence IDA] [pmid 12212850]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence TAS] [pmid 12711678]; go_function: protein binding [goid GO:0005515] [evidence IMP] [pmid 12403466]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IDA] [pmid 12212850] --- --- --- --- --- --- S0002495 // SLU7 SGDID:S0002495, Chr IV from 619640-618492, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023472 // cdna:GeneFinder chromosome:SGD1:IV:618492:619640:-1 // ensembl // 11 // --- /// GENSCAN00000025161 // cdna:Genscan chromosome:SGD1:IV:618492:619310:-1 // ensembl // 11 // --- /// YDR088C // cdna:known chromosome:SGD1:IV:618492:619640:-1 gene:YDR088C // ensembl // 11 // --- --- No cerevisiae_gene 1.22335748030765 2.18406005526884 1.52017918343862 1.83384919259462 1.15247323115236 Max fold change below threshold 4 2.18406005526884 Max fold change at or above threshold -0.967835654459861 1.14418939106216 0.519513210246407 -0.695866946848703 972.992752075195 353.616220158018 0.363431504914941 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774452_at SPAC17C9.03.S1 --- 2.1838715274657 --- --- --- --- 13.8455219268799 8.29582405090332 10.6490831375122 8.24775314331055 0.0375977009534836 0.0561522990465164 0.0952147990465164 0.129638999700546 P M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17C9.03 /GEN=tif471 /DEF=translation initiation factor --- --- --- --- --- --- SPAC17C9.03 // |tif471||translation initiation factor eIF4G |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- D89180 // gb // 8 // Cross Hyb Matching Probes No No 1.09089044957867 -1.66897487723022 -2.1838715274657 -1.3001609385608 -1.67870227034007 Max fold change below threshold 4 2.1838715274657 Max fold change at or above threshold PMMAAA No 4 0 PMAA 2 1 1 No No x = 1
1776136_at YGL208W.S1 One of three beta subunits of the Snf1 serine/threonine protein kinase complex involved in the response to glucose starvation; null mutants exhibit accelerated aging; N-myristoylprotein localized to the cytoplasm and the plasma membrane 2.18386473021224 473.661743164063 231.420936584473 SIP2 1302 // replicative cell aging // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from mutant phenotype /// 7165 // signal transduction // inferred from mutant phenotype /// 7569 // cell aging // inferred from mutant phenotype /// 30447 // filamentous growth // inferred from mutant phenotype /// 42149 // cellular response to glucose starvation // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 4679 // AMP-activated protein kinase activity // inferred from mutant phenotype 227.96240234375 449.484436035156 497.839050292969 234.879470825195 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL208W /GEN=SIP2 /DB_XREF=GI:6321230 /SEG=NC_001139:+97340,98587 /DEF=Member of a family of proteins, including Sip1p and Gal83p, that interact with Snf1p and Snf4p and are involved in the response to glucose starvation /NOTE=Sip2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11331606]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12562756]; go_function: SNF1A/AMP-activated protein kinase activity [goid GO:0004679] [evidence IMP] [pmid 10990457]; go_process: cell aging [goid GO:0007569] [evidence IMP] [pmid 12562756]; go_process: filamentous growth [goid GO:0030447] [evidence IMP] [pmid 12556493]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IMP] [pmid 10990457]; go_process: signal transduction [goid GO:0007165] [evidence IMP] [pmid 10990457] --- --- --- --- --- --- S0003176 // SIP2 SGDID:S0003176, Chr VII from 97342-98589, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021581 // cdna:GeneFinder chromosome:SGD1:VII:97408:98589:1 // ensembl // 11 // --- /// GENSCAN00000019192 // cdna:Genscan chromosome:SGD1:VII:97603:98589:1 // ensembl // 11 // --- /// YGL208W // cdna:known chromosome:SGD1:VII:97342:98589:1 gene:YGL208W // ensembl // 11 // --- --- No cerevisiae_gene -1.34671720338113 1.97174811027552 1.91049779701714 2.18386473021224 1.03034302328072 Max fold change below threshold 4 2.18386473021224 Max fold change at or above threshold -0.881835356371609 0.686214310744646 1.02849374691181 -0.832872701284846 352.541339874268 141.272332335493 0.400725578412668 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775046_at YPL231W.S1 Alpha subunit of fatty acid synthetase, which catalyzes the synthesis of long-chain saturated fatty acids; contains beta-ketoacyl reductase and beta-ketoacyl synthase activities 2.18337715250582 8341.60522460938 4440.53369140625 FAS2 6633 // fatty acid biosynthesis // traceable author statement /// 18065 // protein-cofactor linkage // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5835 // fatty acid synthase complex // traceable author statement 4315 // 3-oxoacyl-[acyl-carrier protein] synthase activity // inferred from sequence similarity /// 4316 // 3-oxoacyl-[acyl-carrier protein] reductase activity // inferred from sequence similarity /// 8897 // phosphopantetheinyltransferase activity // traceable author statement 4754.94482421875 10381.837890625 6301.37255859375 4126.12255859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL231W /GEN=FAS2 /DB_XREF=GI:6325025 /SEG=NC_001148:+108652,114315 /DEF=Alpha subunit of fatty acid synthetase, which catalyzes the synthesis of long-chain saturated fatty acids; contains beta-ketoacyl reductase and beta-ketoacyl synthase activities /NOTE=Fas2p; go_component: fatty-acid synthase complex [goid GO:0005835] [evidence TAS]; go_function: 3-oxoacyl-[acyl-carrier protein] reductase activity [goid GO:0004316] [evidence ISS] [pmid 2900835]; go_function: 3-oxoacyl-[acyl-carrier protein] synthase activity [goid GO:0004315] [evidence ISS] [pmid 2900835]; go_function: holo-[acyl-carrier protein] synthase activity [goid GO:0008897] [evidence TAS] [pmid 9712852]; go_process: fatty acid biosynthesis [goid GO:0006633] [evidence TAS]; go_process: protein-cofactor linkage [goid GO:0018065] [evidence TAS] [pmid 9712852] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 2.20000004768372 --- S0006152 // FAS2 SGDID:S0006152, Chr XVI from 108652-114315, Verified ORF // sgd // 11 // --- /// GENSCAN00000017008 // cdna:Genscan chromosome:SGD1:XVI:108652:114315:1 // ensembl // 11 // --- /// GENEFINDER00000020780 // cdna:GeneFinder chromosome:SGD1:XVI:108652:114315:1 // ensembl // 11 // --- /// YPL231W // cdna:known chromosome:SGD1:XVI:108652:114315:1 gene:YPL231W // ensembl // 11 // --- --- No cerevisiae_gene 1.02075224527263 2.18337715250582 -1.14887208376346 1.32522516906999 -1.1524002878478 Max fold change below threshold 4 2.18337715250582 Max fold change at or above threshold -0.581602124217383 1.41862016483096 -0.0318850447927779 -0.805132995820798 6391.06945800781 2813.13386877785 0.440166373916197 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771122_at SPAC24H6.08.S1 --- 2.18292106865561 --- --- --- --- 58.729377746582 45.2673492431641 55.9692077636719 43.7364082336426 0.0375977009534836 0.0239257998764515 0.0461426004767418 0.0461426004767418 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24H6.08 /DEF=sequence orphan --- --- --- --- --- --- SPAC24H6.08 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.18292106865561 -1.29738937067208 -1.5280199192238 -1.04931586658444 -1.34280294423918 Max fold change below threshold 4 2.18292106865561 Max fold change at or above threshold PAPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1777137_at YGR109W-B.S1 TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// Hypothetical protein /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition 2.18287792150739 33.2455062866211 72.7513961791992 --- 6319 // Ty element transposition // inferred from sequence similarity 943 // retrotransposon nucleocapsid // inferred from sequence similarity 3723 // RNA binding // inferred from sequence similarity /// 3887 // DNA-directed DNA polymerase activity // inferred from sequence similarity /// 3964 // RNA-directed DNA polymerase activity // inferred from sequence similarity /// 4540 // ribonuclease activity // inferred from sequence similarity /// 5515 // protein binding // inferred from sequence similarity /// 8233 // peptidase activity // inferred from sequence similarity 72.4828567504883 33.285831451416 33.2051811218262 73.0199356079102 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR109W-B /GEN=CLB6 /DB_XREF=GI:6321547 /SEG=NC_001139:+707612,712256 /DEF=TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /NOTE=Ygr109w-bp; go_component: retrotransposon nucleocapsid [goid GO:0000943] [evidence ISS] [pmid 9582191]; go_function: DNA-directed DNA polymerase activity [goid GO:0003887] [evidence ISS] [pmid 9582191]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 9582191]; go_function: RNA-directed DNA polymerase activity [goid GO:0003964] [evidence ISS] [pmid 9582191]; go_function: peptidase activity [goid GO:0008233] [evidence ISS] [pmid 9582191]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 9582191]; go_function: ribonuclease activity [goid GO:0004540] [evidence ISS] [pmid 9582191]; go_process: Ty element transposition [goid GO:0006319] [evidence ISS] [pmid 9582191] --- --- --- --- --- --- S0007347 // YGR109W-B SGDID:S0007347, Chr VII from 707614-708463,708465-712258, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0001342 // YIL080W SGDID:S0001342, Chr IX from 205632-206481,206483-210354, one base removed to allow translational frameshift, Pseudogene Ty ORF // sgd // 9 // --- /// GENSCAN00000019425 // cdna:Genscan chromosome:SGD1:VII:708560:712258:1 // ensembl // 11 // --- /// GENEFINDER00000021641 // cdna:GeneFinder chromosome:SGD1:VII:708560:712258:1 // ensembl // 11 // --- /// YIL080W // cdna:pseudogene chromosome:SGD1:IX:205632:210354:1 gene:YIL080W // ensembl // 9 // --- /// YGR109W-B // cdna:known chromosome:SGD1:VII:707614:712258:1 gene:YGR109W-B // ensembl // 11 // --- --- No cerevisiae_gene -1.70955680147051 -2.17758888962363 -1.35549060146045 -2.18287792150739 1.00740973633629 Max fold change below threshold 4 2.18287792150739 Max fold change at or above threshold 0.854211511661547 -0.864216602716882 -0.867752375973745 0.87775746702908 52.9984512329102 22.809813789185 0.430386421839831 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776637_at SPBC16A3.16.S1 --- 2.18252589847001 --- --- --- --- 2.18338370323181 2.93433427810669 3.67693305015564 1.00039303302765 0.366210997104645 0.24609400331974 0.129638999700546 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16A3.16 /GEN=cwc27 /DEF=spliceosome associated protein (predicted) --- --- --- --- --- --- SPBC16A3.16 // |||mitochondrial inner membrane protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.55616036628273 1.34393889345392 -1.65129188635522 1.68405262195238 -2.18252589847001 Max fold change below threshold 2 2.18252589847001 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774491_s_at YBR299W.S1 Maltase (alpha-D-glucosidase), inducible protein involved in maltose catabolism; encoded in the MAL1 complex locus /// Maltase (alpha-D-glucosidase), inducible protein involved in maltose catabolism; encoded in the MAL3 complex locus; functional in genomic reference strain S288C 2.1824552298161 6953.00952148438 3691.27404785156 MAL12 /// MAL32 25 // maltose catabolism // traceable author statement /// 25 // maltose catabolism // inferred from sequence similarity --- 4558 // alpha-glucosidase activity // traceable author statement /// 4558 // alpha-glucosidase activity // inferred from sequence similarity 4056.7421875 8853.658203125 5052.36083984375 3325.80590820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR299W /GEN=MAL32 /DB_XREF=GI:6319776 /SEG=NC_001134:+805307,807061 /DEF=Part of the complex locus MAL3; functional in S288C; highly homologous to MAL62 from S. carlsbergenesis strain CB11 /NOTE=Mal32p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: alpha-glucosidase activity [goid GO:0004558] [evidence ISS] [pmid 2549370]; go_process: maltose catabolism [goid GO:0000025] [evidence ISS] [pmid 2549370] --- --- --- --- --- --- S0000503 // MAL32 SGDID:S0000503, Chr II from 805345-807099, Verified ORF // sgd // 11 // --- /// S0003524 // MAL12 SGDID:S0003524, Chr VII from 1076605-1078359, Verified ORF // sgd // 11 // --- /// GENSCAN00000021378 // cdna:Genscan chromosome:SGD1:II:805345:807099:1 // ensembl // 11 // --- /// GENEFINDER00000022197 // cdna:GeneFinder chromosome:SGD1:II:805345:807099:1 // ensembl // 11 // --- /// GENSCAN00000019566 // cdna:Genscan chromosome:SGD1:VII:1076605:1078359:1 // ensembl // 11 // --- /// GENEFINDER00000021713 // cdna:GeneFinder chromosome:SGD1:VII:1076605:1078359:1 // ensembl // 11 // --- /// YBR299W // cdna:known chromosome:SGD1:II:805345:807099:1 gene:YBR299W // ensembl // 11 // --- /// YGR292W // cdna:known chromosome:SGD1:VII:1076605:1078359:1 gene:YGR292W // ensembl // 11 // --- --- No cerevisiae_gene 1.09296673843505 2.1824552298161 1.09129237014769 1.24542320076724 -1.21977719069354 Max fold change below threshold 4 2.1824552298161 Max fold change at or above threshold -0.514727822044311 1.43651836040914 -0.109739056713161 -0.812051481651666 5322.14178466797 2458.38585554257 0.461916640895343 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780201_at YDR268W.S1 Mitochondrial tryptophanyl-tRNA synthetase 2.1822239171415 295.291870117188 329.889526367188 MSW1 6436 // tryptophanyl-tRNA aminoacylation // inferred from mutant phenotype 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 4830 // tryptophan-tRNA ligase activity // inferred from sequence similarity /// 4830 // tryptophan-tRNA ligase activity // inferred from mutant phenotype 284.164093017578 226.443725585938 364.140014648438 375.614959716797 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR268W /GEN=MSW1 /DB_XREF=GI:6320474 /SEG=NC_001136:+1003996,1005135 /DEF=mitochondrial tryptophanyl-tRNA synthetase /NOTE=Msw1p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 2999114]; go_function: tryptophan-tRNA ligase activity [goid GO:0004830] [evidence IMP,ISS] [pmid 2999114]; go_process: tryptophanyl-tRNA aminoacylation [goid GO:0006436] [evidence IMP] [pmid 2999114] --- --- --- --- scop // a.139.1.Type I dockerin domain // All alpha proteins; Type I dockerin domain; Type I dockerin domain; Type I dockerin domain // 9.89999961853027 /// scop // a.139.1.Type I dockerin domain // All alpha proteins; Type I dockerin domain; Type I dockerin domain; Type I dockerin domain // 6.30000019073486 --- S0002676 // MSW1 SGDID:S0002676, Chr IV from 1003998-1005137, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023448 // cdna:GeneFinder chromosome:SGD1:IV:1003998:1005137:1 // ensembl // 11 // --- /// GENSCAN00000025311 // cdna:Genscan chromosome:SGD1:IV:1003998:1005137:1 // ensembl // 11 // --- /// YDR268W // cdna:known chromosome:SGD1:IV:1003998:1005137:1 gene:YDR268W // ensembl // 11 // --- --- No cerevisiae_gene 1.06647486776819 -1.25489938960457 2.1822239171415 1.28144274240135 1.32182414649257 Max fold change below threshold 4 2.1822239171415 Max fold change at or above threshold -0.403919023217141 -1.22407866762446 0.732474010378774 0.895523680462823 312.590698242188 70.3769904130701 0.225141025656956 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778055_at YPL129W.S1 Subunit (30 kDa) of TFIID, TFIIF, and SWI/SNF complexes, involved in RNA polymerase II transcription initiation and in chromatin modification, contains a YEATS domain 2.18213985284193 478.078826904297 744.873382568359 TAF14 114 // G1-specific transcription in mitotic cell cycle // inferred from physical interaction /// 6338 // chromatin remodeling // traceable author statement /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement 119 // mediator complex // inferred from physical interaction /// 123 // histone acetyltransferase complex // inferred from physical interaction /// 5669 // transcription factor TFIID complex // traceable author statement /// 5669 // transcription factor TFIID complex // inferred from direct assay /// 5674 // transcription factor TFIIF complex // traceable author statement /// 16514 // SWI/SNF complex // inferred from physical interaction /// 31011 // INO80 complex // inferred from physical interaction 16251 // general RNA polymerase II transcription factor activity // traceable author statement 720.556457519531 330.206359863281 625.951293945313 769.190307617188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL129W /GEN=TAF14 /DB_XREF=GI:6325128 /SEG=NC_001148:+305297,306136 /DEF=Subunit (30 kDa) of TFIID, TFIIF, and SWI/SNF complexes, involved in RNA polymerase II transcription initiation and in chromatin modification /NOTE=Taf14p; go_component: SWI/SNF complex [goid GO:0016514] [evidence TAS] [pmid 9726966]; go_component: chromatin remodeling complex [goid GO:0016585] [evidence IPI] [pmid 12887900]; go_component: nucleosome remodeling complex [goid GO:0005679] [evidence TAS] [pmid 9048886]; go_component: transcription factor TFIID complex [goid GO:0005669] [evidence TAS] [pmid 9118213]; go_component: transcription factor TFIIF complex [goid GO:0005674] [evidence TAS] [pmid 9774381]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9048886]; go_process: G1-specific transcription in mitotic cell cycle [goid GO:0000114] [evidence IPI] [pmid 9118213]; go_process: chromatin remodeling [goid GO:0006338] [evidence TAS] [pmid 9048886]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 10384286] --- --- --- --- --- --- S0006050 // TAF14 SGDID:S0006050, Chr XVI from 305297-305305,305411-306136, intron sequence removed, Verified ORF // sgd // 11 // --- /// YPL129W // cdna:known chromosome:SGD1:XVI:305297:306136:1 gene:YPL129W // ensembl // 11 // --- --- No cerevisiae_gene 1.28917377071232 -2.18213985284193 1.1308123595952 -1.15113821872295 1.0674948501122 Max fold change below threshold 4 2.18213985284193 Max fold change at or above threshold 0.554499744523056 -1.42980837240367 0.0735832669541998 0.801725360926412 611.476104736328 196.718490604584 0.321710838871472 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770477_at SPAC14C4.10c.S1 --- 2.18170813626905 --- --- --- --- 9.2782154083252 7.94016981124878 9.03987216949463 4.25272989273071 0.171387001872063 0.303710997104645 0.129638999700546 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC14C4.10c /DEF=Nudix family hydrolase --- --- --- --- --- --- SPAC14C4.10c // |||Nudix family hydrolase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.06982197601911 -1.16851599259009 -1.82422929428009 -1.02636577535188 -2.18170813626905 Max fold change below threshold 4 2.18170813626905 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776365_s_at YER074W.S1 Protein component of the small (40S) ribosomal subunit; identical to Rps24Ap and has similarity to rat S24 ribosomal protein /// Protein component of the small (40S) ribosomal subunit; identical to Rps24Bp and has similarity to rat S24 ribosomal protein 2.1814953118579 1781.91998291016 3370.86291503906 RPS24B /// RPS24A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 3735 // structural constituent of ribosome // traceable author statement 3562.13818359375 1632.88830566406 1930.95166015625 3179.58764648438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER074W /GEN=RPS24A /DB_XREF=GI:6320918 /SEG=NC_001137:+306319,307192 /DEF=Protein component of the small (40S) ribosomal subunit; identical to Rps24Bp and has similarity to rat S24 ribosomal protein /NOTE=Rps24ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0000876 // RPS24A SGDID:S0000876, Chr V from 306319-306321,306788-307192, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0001331 // RPS24B SGDID:S0001331, Chr IX from 232366-232364,231954-231550, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019015 // cdna:GeneFinder chromosome:SGD1:IX:231550:232458:-1 // ensembl // 11 // --- /// GENEFINDER00000019665 // cdna:GeneFinder chromosome:SGD1:V:304027:307192:1 // ensembl // 11 // --- /// YIL069C // cdna:known chromosome:SGD1:IX:231550:232366:-1 gene:YIL069C // ensembl // 11 // --- /// YER074W // cdna:known chromosome:SGD1:V:306319:307192:1 gene:YER074W // ensembl // 11 // --- --- No cerevisiae_gene 1.12408784938273 -2.1814953118579 -1.60528225834401 -1.84475782439085 -1.12031451233381 Max fold change below threshold 4 2.1814953118579 Max fold change at or above threshold 1.05034555475956 -1.00533361935082 -0.687737315520753 0.642725380112005 2576.39144897461 938.497554592678 0.36426823065501 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773496_at SPAC6B12.05c.S1 --- 2.18143275402859 --- --- --- --- 4.10108423233032 3.13064622879028 6.09097957611084 1.91479706764221 0.219482004642487 0.24609400331974 0.194580003619194 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6B12.05c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC6B12.05c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.82282311332574 -1.30998009120789 2.18143275402859 1.48521201493338 -2.14178531063879 Max fold change below threshold 3 2.18143275402859 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1777542_at YKL182W.S1 Beta subunit of fatty acid synthetase, which catalyzes the synthesis of long-chain saturated fatty acids; contains acetyltransacylase, dehydratase, enoyl reductase, malonyl transacylase, and palmitoyl transacylase activities 2.18132721251109 6611.43017578125 3458.8212890625 FAS1 6633 // fatty acid biosynthesis // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5829 // cytosol // traceable author statement /// 5835 // fatty acid synthase complex // inferred from direct assay 4313 // [acyl-carrier protein] S-acetyltransferase activity // inferred from mutant phenotype /// 4314 // [acyl-carrier protein] S-malonyltransferase activity // inferred from mutant phenotype /// 4317 // 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase activity // inferred from mutant phenotype /// 4318 // enoyl-[acyl-carrier protein] reductase (NADH) activity // inferred from mutant phenotype 3639.59985351563 7939.158203125 5283.7021484375 3278.04272460938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL182W /GEN=FAS1 /DB_XREF=GI:6322666 /SEG=NC_001143:+100676,106831 /DEF=Beta subunit of fatty acid synthetase, which catalyzes the synthesis of long-chain saturated fatty acids; contains acetyltransacylase, dehydratase, enoyl reductase, malonyl transacylase, and palmitoyl transacylase activities /NOTE=Fas1p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_component: fatty-acid synthase complex [goid GO:0005835] [evidence IDA] [pmid 2900835]; go_function: 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase activity [goid GO:0004317] [evidence IMP] [pmid 3528750]; go_function: [acyl-carrier protein] S-acetyltransferase activity [goid GO:0004313] [evidence IMP] [pmid 3528750]; go_function: [acyl-carrier protein] S-malonyltransferase activity [goid GO:0004314] [evidence IMP] [pmid 3528750]; go_function: enoyl-[acyl-carrier protein] reductase (NADH) activity [goid GO:0004318] [evidence IMP] [pmid 3528750]; go_process: fatty acid biosynthesis [goid GO:0006633] [evidence TAS] --- --- --- --- --- --- S0001665 // FAS1 SGDID:S0001665, Chr XI from 100676-106831, Verified ORF // sgd // 11 // --- /// GENSCAN00000018283 // cdna:Genscan chromosome:SGD1:XI:100676:106831:1 // ensembl // 11 // --- /// GENEFINDER00000023071 // cdna:GeneFinder chromosome:SGD1:XI:100676:106831:1 // ensembl // 11 // --- /// YKL182W // cdna:known chromosome:SGD1:XI:100676:106831:1 gene:YKL182W // ensembl // 11 // --- --- No cerevisiae_gene 1.09527320628978 2.18132721251109 -1.04671957721738 1.45172611305987 -1.11029664933648 Max fold change below threshold 4 2.18132721251109 Max fold change at or above threshold -0.657126791779653 1.36745406842096 0.117049941701157 -0.827377218342461 5035.12573242188 2123.67825564811 0.421772636574584 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778142_at YBR117C.S1 Transketolase, similar to Tkl1p; catalyzes conversion of xylulose-5-phosphate and ribose-5-phosphate to sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate in the pentose phosphate pathway; needed for synthesis of aromatic amino acids 2.18083921136616 3665.8427734375 5791.45947265625 TKL2 6098 // pentose-phosphate shunt // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4802 // transketolase activity // inferred from sequence similarity 6601.08349609375 3983.96923828125 3347.71630859375 4981.83544921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR117C /GEN=TKL2 /DB_XREF=GI:6319593 /SEG=NC_001134:-474348,476393 /DEF=transketolase, homologous to tkl1 /NOTE=Tkl2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: transketolase activity [goid GO:0004802] [evidence ISS] [pmid 7916691]; go_process: pentose-phosphate shunt [goid GO:0006098] [evidence IGI] [pmid 7916691] --- --- --- --- --- --- S0000321 // TKL2 SGDID:S0000321, Chr II from 476431-474386, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021233 // cdna:Genscan chromosome:SGD1:II:474386:476203:-1 // ensembl // 11 // --- /// GENEFINDER00000022328 // cdna:GeneFinder chromosome:SGD1:II:474386:476203:-1 // ensembl // 11 // --- /// YBR117C // cdna:known chromosome:SGD1:II:474386:476431:-1 gene:YBR117C // ensembl // 11 // --- YBR116C // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene -2.18083921136616 -1.65691126142871 -1.17488635495562 -1.97181687084669 -1.32503041567319 Max fold change below threshold 4 2.18083921136616 Max fold change at or above threshold 1.32053269098655 -0.525186803739302 -0.973904100813761 0.178558213566516 4728.65112304688 1417.93715962307 0.299860810773757 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770239_at YOR166C.S1 Hypothetical protein 2.18078173646584 68.0156478881836 171.25634765625 --- --- --- --- 140.959823608398 64.6372909545898 71.3940048217773 201.552871704102 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR166C /GEN=SEY1 /DB_XREF=GI:6324740 /SEG=NC_001147:-647126,648502 /DEF=Hypothetical ORF /NOTE=Yor166cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005692 // YOR166C SGDID:S0005692, Chr XV from 648502-647126, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017589 // cdna:Genscan chromosome:SGD1:XV:647126:648502:-1 // ensembl // 11 // --- /// GENEFINDER00000022796 // cdna:GeneFinder chromosome:SGD1:XV:647126:647671:-1 // ensembl // 11 // --- /// YOR166C // cdna:known chromosome:SGD1:XV:647126:648502:-1 gene:YOR166C // ensembl // 11 // --- --- No cerevisiae_gene 1.13520369199074 -2.18078173646584 1.64145405530214 -1.97439300345008 1.42986041373063 Max fold change below threshold 4 2.18078173646584 Max fold change at or above threshold 0.330119883153932 -0.851449773025511 -0.746847268321322 1.2681771581929 119.635997772217 64.5941881247987 0.539922676515675 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771016_at SPAC9E9.09c.S1 --- 2.1806050184786 --- --- --- --- 11.0176935195923 11.1645193099976 13.7610750198364 10.6438856124878 0.303710997104645 0.303710997104645 0.194580003619194 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC9E9.09c /DEF=aldehyde dehydrogenase (predicted) --- --- --- --- --- --- D89246 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1574. // gb // 10 // --- /// SPAC9E9.09c // |||alcohol dehydrogenase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.1806050184786 1.01332636364809 -1.40070434779024 1.24899780479151 -1.03511949683731 Max fold change below threshold 4 2.1806050184786 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778666_at YHR096C.S1 Hexose transporter with moderate affinity for glucose, may function in accumulation of reserve carbohydrates during stress, expression induced by a decrease in growth rate, contains an extended N-terminal domain relative to other HXTs 2.18050764145544 6061.65478515625 5234.96752929688 HXT5 8645 // hexose transport // inferred from genetic interaction 5886 // plasma membrane // inferred from sequence similarity 5353 // fructose transporter activity // inferred from genetic interaction /// 5355 // glucose transporter activity // inferred from genetic interaction /// 5355 // glucose transporter activity // inferred from direct assay /// 15578 // mannose transporter activity // inferred from genetic interaction 5868.35986328125 7524.33935546875 4598.97021484375 4601.5751953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR096C /GEN=HXT5 /DB_XREF=GI:6321888 /SEG=NC_001140:-294671,296449 /DEF=Hexose transporter with moderate affinity for glucose, may function in accumulation of reserve carbohydrates during stress, expression induced by a decrease in growth rate, contains an extended N-terminal domain relative to other HXTs /NOTE=Hxt5p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 8929273]; go_function: fructose transporter activity [goid GO:0005353] [evidence IGI] [pmid 10618490]; go_function: glucose transporter activity [goid GO:0005355] [evidence IGI] [pmid 10618490]; go_function: glucose transporter activity [goid GO:0005355] [evidence IDA] [pmid 12702270]; go_function: mannose transporter activity [goid GO:0015578] [evidence IGI] [pmid 10618490]; go_process: hexose transport [goid GO:0008645] [evidence IGI] [pmid 10618490] --- --- --- --- --- S0001138 // span:83-102,136-155,165-184,191-213,223-245,258-277,380-402,409-431,451-473,485-507,511-533 // numtm:11 S0001138 // HXT5 SGDID:S0001138, Chr VIII from 296449-294671, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016635 // cdna:Genscan chromosome:SGD1:VIII:294671:296449:-1 // ensembl // 11 // --- /// GENEFINDER00000020184 // cdna:GeneFinder chromosome:SGD1:VIII:294671:296449:-1 // ensembl // 11 // --- /// YHR096C // cdna:known chromosome:SGD1:VIII:294671:296449:-1 gene:YHR096C // ensembl // 11 // --- --- No cerevisiae_gene -2.18050764145544 1.28218778854192 -1.10780363457711 -1.2760160621046 -1.27529370143928 Max fold change below threshold 4 2.18050764145544 Max fold change at or above threshold 0.158742056290511 1.35335753246345 -0.75698940443791 -0.755110184316056 5648.31115722656 1386.20294581532 0.245419012378909 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777227_at YBL087C.S1 Protein component of the large (60S) ribosomal subunit, identical to Rpl23Bp and has similarity to E. coli L14 and rat L23 ribosomal proteins 2.17991394079349 981.912963867188 2139.3798828125 RPL23A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 2097.58081054688 962.231018066406 1001.59490966797 2181.17895507813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL087C /GEN=RPL23A /DB_XREF=GI:6319384 /SEG=NC_001134:-59818,60735 /DEF=Protein component of the large (60S) ribosomal subunit, identical to Rpl23Bp and has similarity to E. coli L14 and rat L23 ribosomal proteins /NOTE=Rpl23ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0000183 // RPL23A SGDID:S0000183, Chr II from 60735-60694,60189-59818, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YBL087C // cdna:known chromosome:SGD1:II:59818:60735:-1 gene:YBL087C // ensembl // 11 // --- GENSCAN00000021071 // ensembl // 7 // Cross Hyb Matching Probes /// GENEFINDER00000022259 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 1.5141178843606 -2.17991394079349 -1.36172523732783 -2.09424068582999 1.03985455249729 Max fold change below threshold 4 2.17991394079349 Max fold change at or above threshold 0.802199548809916 -0.894054431135098 -0.835243342043871 0.927098224369053 1560.64642333984 669.327710298002 0.428878508474466 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769888_at YOR179C.S1 Subunit of the APT subcomplex of cleavage and polyadenylation factor, may have a role in 3' end formation of both polyadenylated and non-polyadenylated RNAs 2.17981338163905 647.545471191406 349.38916015625 SYC1 30846 // transcription termination from Pol II promoter, RNA polymerase(A) coupled // inferred from physical interaction /// 30847 // transcription termination from Pol II promoter, RNA polymerase(A)-independent // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from physical interaction 3723 // RNA binding // inferred from curator 328.380004882813 579.283813476563 715.80712890625 370.398315429688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR179C /GEN=SYC1 /DB_XREF=GI:6324753 /SEG=NC_001147:-671845,672411 /DEF=Subunit of the APT subcomplex of cleavage and polyadenylation factor, may have a role in 3' end formation of both polyadenylated and non-polyadenylated RNAs /NOTE=Syc1p; go_component: mRNA cleavage and polyadenylation specificity factor complex [goid GO:0005847] [evidence IPI] [pmid 12819204]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: transcription termination from Pol II promoter, poly(A) coupled [goid GO:0030846] [evidence IPI] [pmid 12819204]; go_process: transcription termination from Pol II promoter, poly(A)-independent [goid GO:0030847] [evidence IPI] [pmid 12819204] --- --- --- --- --- --- S0005705 // SYC1 SGDID:S0005705, Chr XV from 672411-671845, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017599 // cdna:Genscan chromosome:SGD1:XV:671845:672411:-1 // ensembl // 11 // --- /// GENEFINDER00000022911 // cdna:GeneFinder chromosome:SGD1:XV:671845:672411:-1 // ensembl // 11 // --- /// YOR179C // cdna:known chromosome:SGD1:XV:671845:672411:-1 gene:YOR179C // ensembl // 11 // --- --- No cerevisiae_gene 1.36652346818265 1.7640654268316 1.52015704684864 2.17981338163905 1.12795636129511 Max fold change below threshold 4 2.17981338163905 Max fold change at or above threshold -0.935830790257605 0.444657315427318 1.19581694969382 -0.704643474863536 498.467315673828 181.7500690955 0.364617826245658 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773197_at YDR034C-A.S1 Protein of unknown function, mutant phenotype suggests a potential role in vacuolar function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// Similar to probable membrane protein YLR334C and ORF YOL106W 2.17895916401473 226.524261474609 258.586761474609 SVL3 6897 // endocytosis // inferred from mutant phenotype /// 6319 // Ty element transposition // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay /// 5933 // bud // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 943 // retrotransposon nucleocapsid // inferred from sequence similarity 3723 // RNA binding // inferred from sequence similarity /// 3887 // DNA-directed DNA polymerase activity // inferred from sequence similarity /// 3964 // RNA-directed DNA polymerase activity // inferred from sequence similarity /// 4540 // ribonuclease activity // inferred from sequence similarity /// 5515 // protein binding // inferred from sequence similarity /// 8233 // peptidase activity // inferred from sequence similarity 324.6552734375 304.052947998047 148.995574951172 192.518249511719 0.00122069998178631 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR034C-A /GEN=LYS14 /DB_XREF=GI:6320238 /SEG=NC_001136:-520511,520687 /DEF=Similar to probable membrane protein YLR334C and ORF YOL106W /NOTE=Ydr034c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.5 S0007233 // span:5-27 // numtm:1 S0007233 // YDR034C-A SGDID:S0007233, Chr IV from 520688-520512, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDR034C-A // cdna:known chromosome:SGD1:IV:520512:520688:-1 gene:YDR034C-A // ensembl // 11 // --- YCR018C-A // ensembl // 1 // Cross Hyb Matching Probes /// YGR122C-A // ensembl // 1 // Cross Hyb Matching Probes /// YMR046W-A // ensembl // 1 // Cross Hyb Matching Probes /// YPR002C-A // ensembl // 1 // Cross Hyb Matching Probes /// S0004246 // sgd // 1 // Negative Strand Matching Probes /// AY169693 // gb // 2 // Negative Strand Matching Probes /// GENEFINDER00000024755 // ensembl // 1 // Negative Strand Matching Probes /// GENSCAN00000018017 // ensembl // 1 // Negative Strand Matching Probes /// YDR340W // ensembl // 1 // Negative Strand Matching Probes /// YLR256W // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene -1.34531929080001 -1.06775900570971 -1.48339907321581 -2.17895916401473 -1.68636102946561 Max fold change below threshold 4 2.17895916401473 Max fold change at or above threshold 0.963559690177557 0.721761543109243 -1.09806144736819 -0.587259785918612 242.555511474609 85.2046456486384 0.351278951076556 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-25srRnaa_at AFFX-25srRnaa Identified by fungal homology and RT-PCR 2.17860776545333 6881.23742675781 4314.28259277344 --- --- --- --- 4885.05517578125 10642.619140625 3119.85571289063 3743.51000976563 2.97848891932517E-5 2.97848891932517E-5 2.97848891932517E-5 2.97848891932517E-5 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /GEN=25S rRNA /DB_XREF=gb:J01355.1 /NOTE=SIF corresponding to nucleotides 117-463 of gb:J01355.1, not 100% identical /DEF=S.cerevisiae 25S rRNA gene and flanks. --- --- --- --- --- --- M19229 // Yeast (S.cerevisiae) 28S large subunit rRNA, 5' end. // gb // 21 // --- L20827 // gb // 2 // Cross Hyb Matching Probes /// S0028422 // sgd // 12 // Negative Strand Matching Probes /// YLR154W-A // ensembl // 12 // Negative Strand Matching Probes AFFX_control cerevisiae_gene -1.07222147498879 2.17860776545333 -1.0241918741068 -1.56579522431027 -1.30493979261113 Max fold change below threshold 4 2.17860776545333 Max fold change at or above threshold -0.207076656739656 1.4657857120186 -0.719956022536186 -0.53875303274276 5597.76000976563 3441.74396673021 0.614843073073138 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 No No 3 < x
RPTR-Sc-M15077-1_s_at AFFX-Sc-M15077-1 --- 2.17751303638703 --- --- --- --- 4.59258985519409 6.75974225997925 6.7526969909668 2.10909867286682 0.219482004642487 0.0461426004767418 0.0561522990465164 0.334473013877869 A P M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL M15077 /FEA=CDS /DB_XREF=AAA29795.1 GI:160794 /NOTE=Luciferase --- --- --- --- --- --- AFFX-Sc-M15077-1 // --- // affx // --- // --- --- No No -1.08498576931591 1.47188024036899 -1.26668856865055 1.47034618894384 -2.17751303638703 Max fold change below threshold 3 2.17751303638703 Max fold change at or above threshold AAPPMA No 4 0 APMA 2 1 1 No No x = 1
1778381_at YLR405W.S1 Dihydrouridine synthase, member of a widespread family of conserved proteins including Smm1p, Dus1p, and Dus3p 2.17731308944924 175.197658538818 274.001449584961 DUS4 6400 // tRNA modification // inferred from sequence similarity --- 17150 // tRNA dihydrouridine synthase activity // inferred from sequence similarity 277.286865234375 127.35277557373 223.042541503906 270.716033935547 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR405W /GEN=DUS4 /DB_XREF=GI:6323437 /SEG=NC_001144:+929787,930890 /DEF=Dihydrouridine synthase, member of a widespread family of conserved proteins including Smm1p, Dus1p, and Dus3p /NOTE=Dus4p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: tRNA dihydrouridine synthase activity [goid GO:0017150] [evidence ISS] [pmid 12003496]; go_process: tRNA modification [goid GO:0006400] [evidence ISS] [pmid 12003496] --- --- --- --- --- --- S0004397 // DUS4 SGDID:S0004397, Chr XII from 929787-930890, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018123 // cdna:Genscan chromosome:SGD1:XII:929796:930890:1 // ensembl // 11 // --- /// GENEFINDER00000024566 // cdna:GeneFinder chromosome:SGD1:XII:929796:930890:1 // ensembl // 11 // --- /// YLR405W // cdna:known chromosome:SGD1:XII:929787:930890:1 gene:YLR405W // ensembl // 11 // --- --- No cerevisiae_gene 1.80799450943723 -2.17731308944924 1.04956034116152 -1.24320169311521 -1.02427204330421 Max fold change below threshold 4 2.17731308944924 Max fold change at or above threshold 0.761480096410411 -1.40548994835472 -0.0225032184482511 0.666513070392557 224.59955406189 69.1906609520739 0.308062325595749 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776034_at YGR038W.S1 Evolutionarily conserved protein with similarity to Orm2p, required for resistance to agents that induce the unfolded protein response; human ortholog is located in the endoplasmic reticulum 2.17727921005263 974.347534179688 720.985748291016 ORM1 6986 // response to unfolded protein // inferred from mutant phenotype /// 6986 // response to unfolded protein // inferred from sequence similarity 5783 // endoplasmic reticulum // inferred from direct assay --- 692.342407226563 904.547729492188 1044.14733886719 749.629089355469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR038W /GEN=ORM1 /DB_XREF=GI:6321475 /SEG=NC_001139:+560684,561352 /DEF=Evolutionarily conserved protein with similarity to Orm2p, required for resistance to agents that induce the unfolded protein response; human ortholog is located in the endoplasmic reticulum /NOTE=Orm1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to unfolded protein [goid GO:0006986] [evidence IMP,ISS] [pmid 12093374] --- --- --- --- --- S0003270 // span:85-107,120-142,163-181 // numtm:3 S0003270 // ORM1 SGDID:S0003270, Chr VII from 560686-561354, Verified ORF // sgd // 11 // --- /// YGR038W // cdna:known chromosome:SGD1:VII:560686:561354:1 gene:YGR038W // ensembl // 11 // --- GENEFINDER00000021598 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 2.17727921005263 1.30650342959013 -1.28392114109039 1.50813719912075 1.08274328068158 Max fold change below threshold 4 2.17727921005263 Max fold change at or above threshold -0.97859891626602 0.358371452332556 1.23789953960968 -0.617672075676216 847.666641235352 158.721036194737 0.18724464131728 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774791_at YEL044W.S1 Protein that associates with the INO80 chromatin remodeling complex under low-salt conditions 2.17652478773737 1802.82940673828 881.049224853516 IES6 8152 // metabolism // traceable author statement 5634 // nucleus // inferred from direct assay --- 863.204284667969 1726.87329101563 1878.78552246094 898.894165039063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL044W /GEN=IES6 /DB_XREF=GI:6320791 /SEG=NC_001137:+69757,70257 /DEF=Protein that associates with the INO80 chromatin remodeling complex under low-salt conditions /NOTE=Ies6p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: metabolism [goid GO:0008152] [evidence TAS] [pmid 14656964] --- --- --- --- --- --- S0000770 // IES6 SGDID:S0000770, Chr V from 69757-70257, Verified ORF // sgd // 11 // --- /// YEL044W // cdna:known chromosome:SGD1:V:69757:70257:1 gene:YEL044W // ensembl // 11 // --- --- No cerevisiae_gene 1.36975942213174 2.00053836813364 1.21538310224066 2.17652478773737 1.04134581003015 Max fold change below threshold 4 2.17652478773737 Max fold change at or above threshold -0.893179859072051 0.718174462664137 1.00159835406804 -0.826592957660123 1341.9393157959 535.989505658245 0.399414116084938 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770882_at YMR142C.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl13Ap; not essential for viability; has similarity to rat L13 ribosomal protein /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl13Bp; not essential for viability; has similarity to rat L13 ribosomal protein 2.17608138559561 2098.45751953125 3524.79748535156 RPL13B /// RPL13A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3580.53100585938 1645.40307617188 2551.51196289063 3469.06396484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR142C /GEN=RPL13B /DB_XREF=GI:6323791 /SEG=NC_001145:-550205,551206 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl13Ap; not essential for viability; has similarity to rat L13 ribosomal protein /NOTE=Rpl13bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004750 // RPL13B SGDID:S0004750, Chr XIII from 551206-551203,550800-550205, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000018832 // cdna:Genscan chromosome:SGD1:XIII:550205:550894:-1 // ensembl // 11 // --- /// GENEFINDER00000022023 // cdna:GeneFinder chromosome:SGD1:XIII:550205:550894:-1 // ensembl // 11 // --- /// YMR142C // cdna:known chromosome:SGD1:XIII:550205:551206:-1 gene:YMR142C // ensembl // 11 // --- --- No cerevisiae_gene 1.24963747425568 -2.17608138559561 -1.35131532949993 -1.40329775362016 -1.03213173413499 Max fold change below threshold 4 2.17608138559561 Max fold change at or above threshold 0.850639067937107 -1.29019578472143 -0.287766201006834 0.727322917791156 2811.62750244141 903.912755009764 0.321490935134499 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776694_at YGL159W.S1 Hypothetical protein 2.17598210545523 320.791778564453 226.051902770996 --- --- --- --- 208.974411010742 305.419311523438 336.164245605469 243.12939453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL159W /GEN=YIP5 /DB_XREF=GI:6321279 /SEG=NC_001139:+202725,203837 /DEF=Hypothetical ORF /NOTE=Ygl159wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003127 // YGL159W SGDID:S0003127, Chr VII from 202727-203839, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000021384 // cdna:GeneFinder chromosome:SGD1:VII:202727:203839:1 // ensembl // 11 // --- /// GENSCAN00000019229 // cdna:Genscan chromosome:SGD1:VII:202922:203839:1 // ensembl // 11 // --- /// YGL159W // cdna:known chromosome:SGD1:VII:202727:203839:1 gene:YGL159W // ensembl // 11 // --- --- No cerevisiae_gene 2.17598210545523 1.4615153599248 -1.31079270465435 1.60863832073769 1.16344098473737 Max fold change below threshold 4 2.17598210545523 Max fold change at or above threshold -1.11450542238568 0.553340217928399 1.08502000605478 -0.523854801597497 273.421840667725 57.8260350847176 0.211490182874566 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773386_at YML087C.S1 Hypothetical protein 2.17579505408455 103.252243041992 106.524742126465 --- --- --- --- 101.739326477051 103.993911743164 102.51057434082 111.310157775879 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML087C /GEN=UFO1 /DB_XREF=GI:6323552 /SEG=NC_001145:-94431,95369 /DEF=Hypothetical ORF /NOTE=Yml087cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004552 // span:15-35,42-61 // numtm:2 S0004552 // YML087C SGDID:S0004552, Chr XIII from 95369-94431, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018644 // cdna:Genscan chromosome:SGD1:XIII:94431:95369:-1 // ensembl // 11 // --- /// GENEFINDER00000021776 // cdna:GeneFinder chromosome:SGD1:XIII:94431:95369:-1 // ensembl // 11 // --- /// YML087C // cdna:known chromosome:SGD1:XIII:94431:95369:-1 gene:YML087C // ensembl // 11 // --- --- No cerevisiae_gene -2.17579505408455 1.0221604107692 1.23287474924405 1.00758062678883 1.09407209218145 Max fold change below threshold 4 2.17579505408455 Max fold change at or above threshold -0.718634409768697 -0.204141843532312 -0.5426369442485 1.46541319754951 104.888492584229 4.3821532400478 0.0417791612033017 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779387_at YML079W.S1 Uncharacterized protein with structural resemblance to plant storage and ligand binding proteins (canavalin, glycinin, auxin binding protein), and also to some plant and bacterial enzymes (epimerase, germin) 2.17553931386743 1472.41790771484 844.859161376953 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 804.773620605469 1194.01916503906 1750.81665039063 884.944702148438 0.000732421991415322 0.00122069998178631 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML079W /GEN=DUS1 /DB_XREF=GI:6323561 /SEG=NC_001145:+110247,110852 /DEF=Hypothetical ORF /NOTE=Yml079wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004544 // YML079W SGDID:S0004544, Chr XIII from 110247-110852, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018651 // cdna:Genscan chromosome:SGD1:XIII:110247:110852:1 // ensembl // 11 // --- /// GENEFINDER00000021951 // cdna:GeneFinder chromosome:SGD1:XIII:110247:110852:1 // ensembl // 11 // --- /// YML079W // cdna:known chromosome:SGD1:XIII:110247:110852:1 gene:YML079W // ensembl // 11 // --- --- No cerevisiae_gene 1.29594155237178 1.48367085409776 1.69575813753549 2.17553931386743 1.09961942028201 Max fold change below threshold 4 2.17553931386743 Max fold change at or above threshold -0.824910439539448 0.0824773813439215 1.38045307851388 -0.638020020318354 1158.6385345459 428.973737001067 0.370239487304117 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772550_x_at YMR230W.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Ap and has similarity to rat ribosomal protein S10 /// Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Bp and has similarity to rat ribosomal protein S10 2.17551943788644 503.689071655273 997.403839111328 RPS10B /// RPS10A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 882.087951660156 601.917297363281 405.460845947266 1112.7197265625 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR230W /GEN=RPS10B /DB_XREF=GI:6323886 /SEG=NC_001145:+732413,733140 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Ap and has similarity to rat ribosomal protein S10 /NOTE=Rps10bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004843 // RPS10B SGDID:S0004843, Chr XIII from 732413-732464,732875-733140, intron sequence removed, Verified ORF // sgd // 11 // --- /// YMR230W // cdna:known chromosome:SGD1:XIII:732413:733140:1 gene:YMR230W // ensembl // 11 // --- --- No cerevisiae_gene 1.24377467153801 -1.46546370327647 -1.61972226247582 -2.17551943788644 1.26146120063002 Max fold change below threshold 4 2.17551943788644 Max fold change at or above threshold 0.423339338366586 -0.478332474535252 -1.11058728776362 1.16558042393229 750.546455383301 310.723536311073 0.413996407660586 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772017_at YDR246W-A.S1 Identified by fungal homology and RT-PCR 2.17529506260397 109.929271697998 80.3711090087891 --- --- --- --- 69.8051376342773 68.0117721557617 151.846771240234 90.9370803833008 0.0107421996071935 0.0239257998764515 0.0107421996071935 0.00585938012227416 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR246W-A /GEN=TRS23 /DB_XREF=GI:33438783 /SEG=NC_001136:+955125,955325 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ydr246w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028542 // YDR246W-A SGDID:S0028542, Chr IV from 955127-955327, Uncharacterized ORF // sgd // 11 // --- /// YDR246W-A // cdna:known chromosome:SGD1:IV:955127:955327:1 gene:YDR246W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.22115309264474 -1.02636845683727 -1.34692744609897 2.17529506260397 1.30272761382891 Max fold change below threshold 4 2.17529506260397 Max fold change at or above threshold -0.646473470476194 -0.692216646376308 1.4461534492057 -0.107463332353199 95.1501903533936 39.2050932893611 0.412033787255191 PPPPPP Called_P_>2EXP 4 0 PPPP 0 4 0 Yes Yes 3 < x
1774799_at SPBP19A11.03c.S1 --- 2.17518159732263 --- --- --- --- 8.22631549835205 14.4142456054688 7.78595542907715 3.78189826011658 0.366210997104645 0.5 0.334473013877869 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP19A11.03c /GEN=mts4 /DEF=19S proteasome regulatory subunit --- --- --- --- --- --- Y09819 // S.pombe mts4 gene. // gb // 11 // --- /// SPBP19A11.03c // |mts4|rpn1|19S proteasome regulatory subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.44059645208376 1.7522116199356 -1.27716530536552 -1.0565582571447 -2.17518159732263 Max fold change below threshold 4 2.17518159732263 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1776015_at YER110C.S1 Karyopherin beta, mediates nuclear import of ribosomal proteins prior to assembly into ribosomes and import of histones H3 and H4; localizes to the nuclear pore, nucleus, and cytoplasm; exhibits genetic interactions with RAI1 2.17473605590797 321.068023681641 524.009399414063 KAP123 6606 // protein-nucleus import // traceable author statement 5634 // nucleus // inferred from direct assay /// 5643 // nuclear pore // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8320 // protein carrier activity // traceable author statement 480.019470214844 264.578033447266 377.558013916016 567.999328613281 0.00122069998178631 0.014160200022161 0.00292969006113708 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER110C /GEN=KAP123 /DB_XREF=GI:6320956 /SEG=NC_001137:-378758,382099 /DEF=Karyopherin beta, mediates nuclear import of ribosomal proteins prior to assembly into ribosomes and import of histones H3 and H4; localizes to the nuclear pore, nucleus, and cytoplasm; exhibits genetic interactions with RAI1 /NOTE=Kap123p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10684247]; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 10684247]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9238021]; go_function: protein carrier activity [goid GO:0008320] [evidence TAS] [pmid 11274141]; go_process: protein-nucleus import [goid GO:0006606] [evidence TAS] [pmid 11274141] --- --- --- --- --- --- S0000912 // KAP123 SGDID:S0000912, Chr V from 382099-378758, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016893 // cdna:Genscan chromosome:SGD1:V:378758:382099:-1 // ensembl // 11 // --- /// GENEFINDER00000019754 // cdna:GeneFinder chromosome:SGD1:V:378758:382099:-1 // ensembl // 11 // --- /// YER110C // cdna:known chromosome:SGD1:V:378758:382099:-1 gene:YER110C // ensembl // 11 // --- --- No cerevisiae_gene 2.17473605590797 -1.81428315858474 -1.29562280143805 -1.27137937091072 1.18328393712668 Max fold change below threshold 4 2.17473605590797 Max fold change at or above threshold 0.438977726203161 -1.20633792785904 -0.343515375011811 1.11087557666769 422.538711547852 130.942312641143 0.309894239421217 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1779976_at YIL120W.S1 Multidrug transporter required for resistance to quinidine, ketoconazole, fluconazole, and barban; member of the major facilitator superfamily of transporters conferring multiple drug resistance (MFS-MDR) 2.17415908571669 154.235916137695 300.610885620117 QDR1 6855 // multidrug transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay /// 5887 // integral to plasma membrane // inferred from sequence similarity 15239 // multidrug transporter activity // inferred from sequence similarity /// 15559 // multidrug efflux pump activity // inferred from mutant phenotype 296.659820556641 136.44807434082 172.02375793457 304.561950683594 0.000244141003349796 0.0107421996071935 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL120W /GEN=QDR1 /DB_XREF=GI:6322071 /SEG=NC_001141:+134414,136105 /DEF=Quinidine Resistance /NOTE=Qdr1p; go_component: integral to plasma membrane [goid GO:0005887] [evidence ISS] [pmid 11302822]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 11302822]; go_function: multidrug transporter activity [goid GO:0015239] [evidence ISS] [pmid 11302822]; go_process: multidrug transport [goid GO:0006855] [evidence IMP] [pmid 11302822] --- --- --- --- --- S0001382 // span:70-92,107-129,136-155,161-183,195-217,222-244,345-367,420-442,449-471,486-505,510-532 // numtm:11 S0001382 // QDR1 SGDID:S0001382, Chr IX from 134414-136105, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019047 // cdna:GeneFinder chromosome:SGD1:IX:134438:136174:1 // ensembl // 11 // --- /// YIL120W // cdna:known chromosome:SGD1:IX:134414:136105:1 gene:YIL120W // ensembl // 11 // --- GENSCAN00000016386 // ensembl // 8 // Negative Strand Matching Probes No cerevisiae_gene -1.18982983300067 -2.17415908571669 1.68908920312204 -1.72452819377121 1.02663700838262 Max fold change below threshold 4 2.17415908571669 Max fold change at or above threshold 0.806864546935402 -1.06020452777773 -0.645614085949618 0.898954066791944 227.423400878906 85.8092228004133 0.377310437135285 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1779139_at YBL076C.S1 Cytoplasmic isoleucine-tRNA synthetase, target of the G1-specific inhibitor reveromycin A 2.17414407675059 2090.95092773438 1608.05480957031 ILS1 6412 // protein biosynthesis // traceable author statement 5829 // cytosol // inferred from direct assay 4822 // isoleucine-tRNA ligase activity // inferred from direct assay 1516.27490234375 2012.45166015625 2169.4501953125 1699.83471679688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL076C /GEN=ILS1 /DB_XREF=GI:6319395 /SEG=NC_001134:-81041,84259 /DEF=Cytoplasmic isoleucine-tRNA synthetase, target of the G1-specific inhibitor reveromycin A /NOTE=Ils1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 7619074]; go_function: isoleucine-tRNA ligase activity [goid GO:0004822] [evidence IDA] [pmid 7619074]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 10588711] --- --- --- --- --- --- S0000172 // ILS1 SGDID:S0000172, Chr II from 84259-81041, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021080 // cdna:Genscan chromosome:SGD1:II:81041:84259:-1 // ensembl // 11 // --- /// GENEFINDER00000022394 // cdna:GeneFinder chromosome:SGD1:II:81041:84259:-1 // ensembl // 11 // --- /// YBL076C // cdna:known chromosome:SGD1:II:81041:84259:-1 gene:YBL076C // ensembl // 11 // --- YBL077W // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene 2.17414407675059 1.32723403720892 -1.05350711351076 1.43077630049744 1.12105971955969 Max fold change below threshold 4 2.17414407675059 Max fold change at or above threshold -1.12681658622999 0.551014379155363 1.08190785543714 -0.506105648362509 1849.50286865234 295.72511656354 0.159894381120383 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770216_at YPL195W.S1 Delta adaptin-like subunit of the clathrin associated protein complex (AP-3); functions in transport of alkaline phosphatase to the vacuole via the alternate pathway, suppressor of loss of casein kinase 1 function 2.1735256480649 919.652557373047 1490.65069580078 APL5 6896 // Golgi to vacuole transport // inferred from mutant phenotype /// 16192 // vesicle-mediated transport // traceable author statement 30123 // AP-3 adaptor complex // inferred from sequence similarity 5515 // protein binding // inferred from physical interaction 1605.529296875 1100.63000488281 738.675109863281 1375.77209472656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL195W /GEN=APL5 /DB_XREF=GI:6325061 /SEG=NC_001148:+176222,179020 /DEF=Delta-like subunit of the yeast AP-3 complex which functions in transport of alkaline phosphatase to the vacuole via the alternate pathway, suppressor of loss of casein kinase 1 function /NOTE=Apl5p; go_component: AP-3 adaptor complex [goid GO:0030123] [evidence ISS] [pmid 9335339]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi to vacuole transport [goid GO:0006896] [evidence IMP] [pmid 9335339] --- --- --- --- --- --- S0006116 // APL5 SGDID:S0006116, Chr XVI from 176222-179020, Verified ORF // sgd // 11 // --- /// GENSCAN00000017038 // cdna:Genscan chromosome:SGD1:XVI:176222:179020:1 // ensembl // 11 // --- /// GENEFINDER00000020740 // cdna:GeneFinder chromosome:SGD1:XVI:177584:179020:1 // ensembl // 11 // --- /// YPL195W // cdna:known chromosome:SGD1:XVI:176222:179020:1 gene:YPL195W // ensembl // 11 // --- --- No cerevisiae_gene -1.34284040465835 -1.45873662334505 -1.03383439764007 -2.1735256480649 -1.16700237127146 Max fold change below threshold 4 2.1735256480649 Max fold change at or above threshold 1.07268983353894 -0.280033801351407 -1.2497815293097 0.457125497122165 1205.15162658691 373.246448106242 0.309709118647009 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779998_at SPBC18H10.13.S1 --- 2.1734056050595 --- --- --- --- 32.6912536621094 38.8167915344238 32.3286933898926 18.7089786529541 0.0952147990465164 0.171387001872063 0.129638999700546 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18H10.13 /GEN=rps1402 /DEF=40S ribosomal protein S14 --- --- --- --- --- --- SPBC18H10.13 // |rps1402|rps14-2|40S ribosomal protein S14|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.74570447155403 1.18737543489849 -2.1734056050595 -1.01121481365932 -1.74735640403051 Max fold change below threshold 4 2.1734056050595 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774564_at YLL026W.S1 Heat shock protein that cooperates with Ydj1p (Hsp40) and Ssa1p (Hsp70) to refold and reactivate previously denatured, aggregated proteins; responsive to stresses including: heat, ethanol, and sodium arsenite; involved in [PSI+] propagation 2.17339366694021 7812.80590820313 4185.45068359375 HSP104 6950 // response to stress // inferred from direct assay /// 51085 // chaperone cofactor dependent protein folding // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 42623 // ATPase activity, coupled // inferred from direct assay /// 51087 // chaperone binding // inferred from direct assay 4563.06201171875 9917.330078125 5708.28173828125 3807.83935546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL026W /GEN=HSP104 /DB_XREF=GI:6323002 /SEG=NC_001144:+88622,91348 /DEF=plays a major role in the acquisition of tolerance to a variety of stresses such as heat, ethanol, and sodium arsenite, inheritance of [PSI+], and reactivation of mRNA splicing after heat shock. /NOTE=Hsp104p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10467108]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10467108]; go_function: ATPase activity, coupled [goid GO:0042623] [evidence IDA] [pmid 11158570]; go_function: co-chaperone activity [goid GO:0003767] [evidence IDA] [pmid 9674429]; go_function: heat shock protein activity [goid GO:0003773] [evidence IDA,IMP] [pmid 8643570]; go_process: protein folding [goid GO:0006457] [evidence IDA] [pmid 9674429]; go_process: response to stress [goid GO:0006950] [evidence IDA] [pmid 9674429] --- --- --- --- scop // a.4.1.Transcriptional regulator TyrR, C-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Transcriptional regulator TyrR, C-terminal domain // 1.0 /// scop // a.4.3.ARID domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; ARID-like; ARID domain // 0.180000007152557 --- S0003949 // HSP104 SGDID:S0003949, Chr XII from 88622-91348, Verified ORF // sgd // 11 // --- /// GENSCAN00000017700 // cdna:Genscan chromosome:SGD1:XII:88622:91348:1 // ensembl // 11 // --- /// GENEFINDER00000024791 // cdna:GeneFinder chromosome:SGD1:XII:88622:91348:1 // ensembl // 11 // --- /// YLL026W // cdna:known chromosome:SGD1:XII:88622:91348:1 gene:YLL026W // ensembl // 11 // --- --- No cerevisiae_gene -1.17742448194475 2.17339366694021 -1.13330054960247 1.25097614795095 -1.19833364429236 Max fold change below threshold 4 2.17339366694021 Max fold change at or above threshold -0.52671249496133 1.43709650398021 -0.106675101073743 -0.803708907945139 5999.12829589844 2726.47088861091 0.45447784313514 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775341_at YMR255W.S1 Coiled-coiled protein of unknown function, identified as a high-copy suppressor of a dbp5 mutation 2.17331312706718 2621.96350097656 1431.53454589844 GFD1 6406 // mRNA-nucleus export // inferred from genetic interaction 5643 // nuclear pore // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1379.40979003906 2997.88940429688 2246.03759765625 1483.65930175781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR255W /GEN=GFD1 /DB_XREF=GI:6323911 /SEG=NC_001145:+778000,778566 /DEF=Coiled-coiled protein of unknown function, identified as a high-copy suppressor of a dbp5 mutation /NOTE=Gfd1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10523319]; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 10523319]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IGI] [pmid 10523319] --- --- --- --- --- --- S0004868 // GFD1 SGDID:S0004868, Chr XIII from 778000-778566, Verified ORF // sgd // 10 // --- /// GENSCAN00000018928 // cdna:Genscan chromosome:SGD1:XIII:778000:778566:1 // ensembl // 10 // --- /// YMR255W // cdna:known chromosome:SGD1:XIII:778000:778566:1 gene:YMR255W // ensembl // 10 // --- --- No cerevisiae_gene 1.08157706220064 2.17331312706718 1.07457085651707 1.62825986438203 1.07557544717426 Max fold change below threshold 4 2.17331312706718 Max fold change at or above threshold -0.858628794951925 1.28811765443113 0.290863699454286 -0.720352558933488 2026.7490234375 753.922110700564 0.37198592523403 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778696_at YIR022W.S1 18kDa catalytic subunit of the Signal Peptidase Complex (SPC; Spc1p, Spc2p, Spc3p, and Sec11p) which cleaves the signal sequence of proteins targeted to the endoplasmic reticulum 2.17285158252549 634.691864013672 962.857849121094 SEC11 6465 // signal peptide processing // inferred from physical interaction /// 6465 // signal peptide processing // inferred from sequence similarity /// 6465 // signal peptide processing // inferred from direct assay /// 6465 // signal peptide processing // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay /// 5787 // signal peptidase complex // inferred from direct assay 9003 // signal peptidase activity // inferred from mutant phenotype /// 9003 // signal peptidase activity // inferred from direct assay /// 9003 // signal peptidase activity // inferred from sequence similarity 911.897827148438 419.677917480469 849.705810546875 1013.81787109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR022W /GEN=SEC11 /DB_XREF=GI:6322213 /SEG=NC_001141:+398730,399233 /DEF=signal peptidase subunit /NOTE=Sec11p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11058593]; go_component: signal peptidase complex [goid GO:0005787] [evidence IDA] [pmid 1846444]; go_function: signal peptidase activity [goid GO:0009003] [evidence IDA,IMP,ISS] [pmid 10206957]; go_process: signal peptide processing [goid GO:0006465] [evidence IDA,IMP,ISS] [pmid 10206957]; go_process: signal peptide processing [goid GO:0006465] [evidence IPI] [pmid 1846444] --- --- --- --- --- --- S0001461 // SEC11 SGDID:S0001461, Chr IX from 398730-399233, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019038 // cdna:GeneFinder chromosome:SGD1:IX:398730:399233:1 // ensembl // 11 // --- /// YIR022W // cdna:known chromosome:SGD1:IX:398730:399233:1 gene:YIR022W // ensembl // 11 // --- --- No cerevisiae_gene -1.13695382602869 -2.17285158252549 1.34244398493387 -1.07319241063155 1.11176695558539 Max fold change below threshold 4 2.17285158252549 Max fold change at or above threshold 0.432379794164345 -1.44898826161293 0.194668821770975 0.821939645677611 798.774856567383 261.628716484511 0.327537496121025 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777987_at YDR444W.S1 Hypothetical protein 2.17232148548115 394.578353881836 622.053619384766 --- --- 5737 // cytoplasm // inferred from direct assay --- 591.8095703125 336.062103271484 453.094604492188 652.297668457031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR444W /GEN=SSN2 /DB_XREF=GI:6320652 /SEG=NC_001136:+1350278,1352341 /DEF=Hypothetical ORF /NOTE=Ydr444wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002852 // YDR444W SGDID:S0002852, Chr IV from 1350280-1352343, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025448 // cdna:Genscan chromosome:SGD1:IV:1350280:1352343:1 // ensembl // 11 // --- /// GENEFINDER00000023941 // cdna:GeneFinder chromosome:SGD1:IV:1350811:1352343:1 // ensembl // 11 // --- /// YDR444W // cdna:known chromosome:SGD1:IV:1350280:1352343:1 gene:YDR444W // ensembl // 11 // --- YDR445C // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene -2.17232148548115 -1.76101251688713 1.17390344761581 -1.306150116212 1.10220871911989 Max fold change below threshold 4 2.17232148548115 Max fold change at or above threshold 0.588320049366506 -1.21375090991864 -0.389105902941859 1.01453676349399 508.315986633301 141.918644059647 0.279193745212714 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773698_at YIR016W.S1 Hypothetical protein 2.17217578845728 5143.94677734375 2761.52490234375 --- --- --- --- 2792.63549804688 6066.09521484375 4221.79833984375 2730.41430664063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR016W /GEN=RPR2 /DB_XREF=GI:6322206 /SEG=NC_001141:+382625,383422 /DEF=Hypothetical ORF /NOTE=Yir016wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001455 // YIR016W SGDID:S0001455, Chr IX from 382625-383422, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000019074 // cdna:GeneFinder chromosome:SGD1:IX:382625:383482:1 // ensembl // 11 // --- /// YIR016W // cdna:known chromosome:SGD1:IX:382625:383422:1 gene:YIR016W // ensembl // 11 // --- --- No cerevisiae_gene 1.09185746376207 2.17217578845728 1.01632117818254 1.51176132466855 -1.02278818685315 Max fold change below threshold 4 2.17217578845728 Max fold change at or above threshold -0.739723870864368 1.34755789743248 0.171564430104524 -0.779398456672639 3952.73583984375 1568.28836744351 0.396760226584103 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773527_at SPBC4.03c.S1 --- 2.17191390293267 --- --- --- --- 2.50983285903931 4.29165267944336 5.45114088058472 1.17811000347137 0.601073980331421 0.696289002895355 0.5 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC4.03c /DEF=COPII-coated vesicle component (putative) --- --- --- --- --- --- D89251 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1608. // gb // 11 // --- /// SPBC4.03c // |||COPII-coated vesicle component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.00799040410556 1.70993564929502 -1.59555814400262 2.17191390293267 -2.1303892265102 Max fold change below threshold 3 2.17191390293267 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779332_at YPR027C.S1 Hypothetical protein 2.17187640966523 14.7074327468872 21.1567697525024 --- --- --- --- 22.7286911010742 18.9498634338379 10.4650020599365 19.5848484039307 0.0239257998764515 0.018554700538516 0.111571997404099 0.149657994508743 P P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR027C /GEN=ATH1 /DB_XREF=GI:6325284 /SEG=NC_001148:-620420,621253 /DEF=Hypothetical ORF /NOTE=Ypr027cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0006231 // span:2-21,83-105 // numtm:2 S0006231 // YPR027C SGDID:S0006231, Chr XVI from 621255-620422, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017207 // cdna:Genscan chromosome:SGD1:XVI:620422:621255:-1 // ensembl // 11 // --- /// GENEFINDER00000020732 // cdna:GeneFinder chromosome:SGD1:XVI:620422:621255:-1 // ensembl // 11 // --- /// YPR027C // cdna:known chromosome:SGD1:XVI:620422:621255:-1 gene:YPR027C // ensembl // 11 // --- --- No cerevisiae_gene 1.12280113591544 -1.19941186808179 1.90134772472848 -2.17187640966523 -1.16052422935848 Max fold change below threshold 4 2.17187640966523 Max fold change at or above threshold 0.914495029369796 0.194041701983696 -1.42364165051165 0.315104919158159 17.9321012496948 5.2450693523013 0.292496081706574 PPPPAA Called_P_>2EXP 4 0 PPAA 2 2 0 Yes No 1 < x = 2
1770498_at SPAC31A2.12.S1 --- 2.17091024101655 --- --- --- --- 9.33775806427002 16.8375473022461 7.62324666976929 7.37700891494751 0.111571997404099 0.0107421996071935 0.303710997104645 0.0952147990465164 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31A2.12 /DEF=arrestin family --- --- --- --- --- --- SPAC31A2.12 // |||arrestin family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.35337391513483 1.80316808235515 -2.17091024101655 -1.22490566929964 -1.26579189098573 Max fold change below threshold 4 2.17091024101655 Max fold change at or above threshold AMPAAA No 4 0 APAA 3 1 0 No No x = 1
1777158_at YMR258C.S1 Hypothetical protein 2.17005162092804 1125.95663452148 582.046936035156 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 568.815673828125 1234.359375 1017.55389404297 595.278198242188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR258C /GEN=PET111 /DB_XREF=GI:6323914 /SEG=NC_001145:-782619,784280 /DEF=Hypothetical ORF /NOTE=Ymr258cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004871 // YMR258C SGDID:S0004871, Chr XIII from 784280-782619, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000018930 // cdna:Genscan chromosome:SGD1:XIII:782619:784181:-1 // ensembl // 10 // --- /// YMR258C // cdna:known chromosome:SGD1:XIII:782619:784280:-1 gene:YMR258C // ensembl // 10 // --- --- No cerevisiae_gene 1.24930124826761 2.17005162092804 -1.28065012313552 1.78889918274375 1.04652214351966 Max fold change below threshold 4 2.17005162092804 Max fold change at or above threshold -0.873623557925756 1.16516666652173 0.501016597332389 -0.792559705928364 854.00178527832 326.440500445423 0.382248030475763 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Sc-SRB4-M_at AFFX-r2-Sc-SRB4-M subunit of RNA polymerase II holoenzyme/mediator complex 2.16911371328731 237.176986694336 266.04118347168 SRB4 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from direct assay 245.455841064453 215.622924804688 258.731048583984 286.626525878906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=SRB4 SGD:YER022W subunit of RNA polymerase II holoenzymemediator complex (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- S0000824 // SRB4 SGDID:S0000824, Chr V from 198811-200874, Verified ORF // sgd // 11 // --- /// GENSCAN00000016824 // cdna:Genscan chromosome:SGD1:V:198811:200874:1 // ensembl // 11 // --- /// GENEFINDER00000019772 // cdna:GeneFinder chromosome:SGD1:V:198811:200874:1 // ensembl // 11 // --- /// YER022W // cdna:known chromosome:SGD1:V:198811:200874:1 gene:YER022W // ensembl // 11 // --- --- AFFX_control cerevisiae_gene 2.16911371328731 -1.13835688522818 1.73642205235123 1.05408389330627 1.16773153425851 Max fold change below threshold 4 2.16911371328731 Max fold change at or above threshold -0.208622116844138 -1.22008958391984 0.24146598073798 1.18724572002599 251.609085083008 29.4946869087317 0.117224252450984 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 No No 3 < x
1779507_at YOR006C.S1 Hypothetical protein 2.16894768113732 305.972457885742 312.005325317383 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 287.424438476563 258.151947021484 353.79296875 336.586212158203 0.000732421991415322 0.00195312988944352 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR006C /GEN=DNL4 /DB_XREF=GI:6324579 /SEG=NC_001147:-337680,338621 /DEF=Hypothetical ORF /NOTE=Yor006cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005532 // YOR006C SGDID:S0005532, Chr XV from 338621-337680, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017471 // cdna:Genscan chromosome:SGD1:XV:337680:338621:-1 // ensembl // 11 // --- /// YOR006C // cdna:known chromosome:SGD1:XV:337680:338621:-1 gene:YOR006C // ensembl // 11 // --- --- No cerevisiae_gene 2.16894768113732 -1.11339248761367 1.29148084096491 1.2309077496166 1.17104242750621 Max fold change below threshold 4 2.16894768113732 Max fold change at or above threshold -0.489661400803679 -1.15434828564242 1.01736070240455 0.626648984041547 308.988891601563 44.0395201451582 0.142527842722406 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772090_at SPAC56F8.15.S1 --- 2.16869566854003 --- --- --- --- 5.65929651260376 6.50589752197266 2.609539270401 5.75096464157104 0.149657994508743 0.432372987270355 0.5 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC56F8.15 /DEF=dubious --- --- --- --- --- --- SPAC56F8.15 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.29309330107963 1.14959474335431 -1.16782147622042 -2.16869566854003 1.01619779574425 Max fold change below threshold 4 2.16869566854003 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779218_s_at YBR048W.S1 Protein component of the small (40S) ribosomal subunit; identical to Rps11Bp and has similarity to E. coli S17 and rat S11 ribosomal proteins /// Protein component of the small (40S) ribosomal subunit; identical to Rps11Ap and has similarity to E. coli S17 and rat S11 ribosomal proteins 2.16835067405933 2838.32824707031 4956.93286132813 RPS11A /// RPS11B 28 // ribosomal small subunit assembly and maintenance // inferred from mutant phenotype /// 28 // ribosomal small subunit assembly and maintenance // inferred from sequence similarity /// 6412 // protein biosynthesis // traceable author statement /// 6450 // regulation of translational fidelity // inferred from mutant phenotype /// 6450 // regulation of translational fidelity // inferred from sequence similarity 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 5857.91845703125 2975.1015625 2701.55493164063 4055.947265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR048W /GEN=RPS11B /DB_XREF=GI:6319522 /SEG=NC_001134:+332791,333772 /DEF=Protein component of the small (40S) ribosomal subunit; identical to Rps11Ap and has similarity to E. coli S17 and rat S11 ribosomal proteins /NOTE=Rps11bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: regulation of translational fidelity [goid GO:0006450] [evidence IMP,ISS] [pmid 8070651]; go_process: ribosomal small subunit assembly and maintenance [goid GO:0000028] [evidence IMP,ISS] [pmid 8070651] --- --- --- --- --- --- S0000252 // RPS11B SGDID:S0000252, Chr II from 332829-332873,333385-333810, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0002432 // RPS11A SGDID:S0002432, Chr IV from 491511-491555,491895-492320, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000021179 // cdna:Genscan chromosome:SGD1:II:333367:333810:1 // ensembl // 11 // --- /// GENEFINDER00000022365 // cdna:GeneFinder chromosome:SGD1:II:333367:333810:1 // ensembl // 11 // --- /// GENEFINDER00000023599 // cdna:GeneFinder chromosome:SGD1:IV:491511:492320:1 // ensembl // 11 // --- /// YBR048W // cdna:known chromosome:SGD1:II:332829:333810:1 gene:YBR048W // ensembl // 11 // --- /// YDR025W // cdna:known chromosome:SGD1:IV:491511:492320:1 gene:YDR025W // ensembl // 11 // --- --- No cerevisiae_gene -1.12389866845786 -1.96898100248678 -1.66386898433751 -2.16835067405933 -1.44427875250705 Max fold change below threshold 4 2.16835067405933 Max fold change at or above threshold 1.36918574294277 -0.64435103693754 -0.835412842941439 0.110578136936214 3897.63055419922 1431.71802141236 0.367330356611111 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778459_at SPBC30D10.09c.S1 --- 2.16808333823101 --- --- --- --- 6.26348686218262 8.28897953033447 13.579761505127 8.64792156219482 0.432372987270355 0.171387001872063 0.129638999700546 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30D10.09c /DEF=TB2DP1 domain --- --- --- --- --- --- SPBC30D10.09c // |||TB2/DP1 domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 9 // --- --- No No 1.03756709688048 1.3233810036996 1.11156711088834 2.16808333823101 1.38068806600503 Max fold change below threshold 4 2.16808333823101 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774296_at YER116C.S1 Protein containing a RING finger domain that forms a complex with Hex3p; mutant phenotypes and genetic interactions suggest a possible role in resolving recombination intermediates during DNA replication or repair 2.16748685559745 330.421417236328 251.922103881836 SLX8 6310 // DNA recombination // inferred from genetic interaction /// 6310 // DNA recombination // inferred from mutant phenotype 5634 // nucleus // inferred from sequence similarity 3677 // DNA binding // inferred from sequence similarity 224.103698730469 274.145690917969 386.697143554688 279.740509033203 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER116C /GEN=SLX8 /DB_XREF=GI:6320962 /SEG=NC_001137:-395344,396168 /DEF=Protein containing a RING finger domain that forms a complex with Hex3p; mutant phenotypes and genetic interactions suggest a possible role in resolving recombination intermediates during DNA replication or repair /NOTE=Slx8p; go_component: nucleus [goid GO:0005634] [evidence ISS] [pmid 11139495]; go_function: DNA binding [goid GO:0003677] [evidence ISS] [pmid 11139495]; go_process: DNA recombination [goid GO:0006310] [evidence IGI,IMP] [pmid 11139495] --- --- --- --- --- --- S0000918 // SLX8 SGDID:S0000918, Chr V from 396168-395344, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016897 // cdna:Genscan chromosome:SGD1:V:395344:396168:-1 // ensembl // 11 // --- /// GENEFINDER00000019603 // cdna:GeneFinder chromosome:SGD1:V:395344:396168:-1 // ensembl // 11 // --- /// YER116C // cdna:known chromosome:SGD1:V:395344:396168:-1 gene:YER116C // ensembl // 11 // --- --- No cerevisiae_gene 2.16748685559745 1.22329837691651 1.70534014758771 1.72552771661199 1.24826368604317 Max fold change below threshold 4 2.16748685559745 Max fold change at or above threshold -0.980244261553412 -0.248847314317196 1.39616690807942 -0.167075332208809 291.171760559082 68.4197444036338 0.234980700986457 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770843_at YOL015W.S1 Hypothetical protein 2.16722330511949 62.7105388641357 88.6599617004395 --- --- --- --- 88.5339126586914 67.3065490722656 58.1145286560059 88.7860107421875 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL015W /GEN=CMK2 /DB_XREF=GI:6324558 /SEG=NC_001147:+297078,298838 /DEF=Hypothetical ORF /NOTE=Yol015wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005375 // YOL015W SGDID:S0005375, Chr XV from 297078-298838, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017456 // cdna:Genscan chromosome:SGD1:XV:297141:298838:1 // ensembl // 11 // --- /// GENEFINDER00000022805 // cdna:GeneFinder chromosome:SGD1:XV:297141:298838:1 // ensembl // 11 // --- /// YOL015W // cdna:known chromosome:SGD1:XV:297078:298838:1 gene:YOL015W // ensembl // 11 // --- --- No cerevisiae_gene -2.16722330511949 -1.31538333013678 1.15632777008763 -1.52343853948718 1.00284747478029 Max fold change below threshold 4 2.16722330511949 Max fold change at or above threshold 0.831893864196229 -0.542483717165092 -1.13762624327708 0.848216096245938 75.6852502822876 15.4450741006704 0.204069802809187 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779741_at YKR061W.S1 Mannosyltransferase involved in N-linked protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family 2.16692823127312 310.948684692383 322.952377319336 KTR2 32 // cell wall mannoprotein biosynthesis // inferred from mutant phenotype /// 6487 // N-linked glycosylation // inferred from mutant phenotype 5794 // Golgi apparatus // inferred from direct assay 30 // mannosyltransferase activity // inferred from direct assay 325.4404296875 312.895843505859 309.001525878906 320.464324951172 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR061W /GEN=KTR2 /DB_XREF=GI:6322914 /SEG=NC_001143:+557319,558596 /DEF=May be involved in extracellular matrix assembly; involved in N-linked glycosylation of cell wall mannoproteins /NOTE=Ktr2p; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 8631921]; go_function: mannosyltransferase activity [goid GO:0000030] [evidence IDA] [pmid 8631921]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IMP] [pmid 8631921]; go_process: cell wall mannoprotein biosynthesis [goid GO:0000032] [evidence IMP] [pmid 8631921] --- --- --- --- --- S0001769 // span:13-35 // numtm:1 S0001769 // KTR2 SGDID:S0001769, Chr XI from 557319-558596, Verified ORF // sgd // 10 // --- /// GENSCAN00000018469 // cdna:Genscan chromosome:SGD1:XI:557508:558596:1 // ensembl // 10 // --- /// GENEFINDER00000023141 // cdna:GeneFinder chromosome:SGD1:XI:557508:558596:1 // ensembl // 10 // --- /// YKR061W // cdna:known chromosome:SGD1:XI:557319:558596:1 gene:YKR061W // ensembl // 10 // --- --- No cerevisiae_gene 2.16692823127312 -1.04009189141372 -1.00670822126217 -1.05320007324183 -1.01552779622845 Max fold change below threshold 4 2.16692823127312 Max fold change at or above threshold 1.14807952569831 -0.548310866408985 -1.07493509382638 0.475166434537049 316.950531005859 7.39486986014902 0.0233313061084991 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770933_at YMR275C.S1 Ubiquitin-binding component of the Rsp5p E3-ubiquitin ligase complex, functional homolog of Bul2p, disruption causes temperature-sensitive growth, overexpression causes missorting of amino acid permeases 2.16678991678822 366.826889038086 718.355194091797 BUL1 1 // mitochondrion inheritance // inferred from genetic interaction /// 209 // protein polyubiquitination // inferred from mutant phenotype /// 209 // protein polyubiquitination // inferred from physical interaction /// 6513 // protein monoubiquitination // inferred from mutant phenotype /// 6513 // protein monoubiquitination // inferred from physical interaction 151 // ubiquitin ligase complex // traceable author statement /// 5886 // plasma membrane // inferred from physical interaction 5515 // protein binding // traceable author statement /// 43130 // ubiquitin binding // traceable author statement 681.549194335938 352.746368408203 380.907409667969 755.161193847656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR275C /GEN=BUL1 /DB_XREF=GI:6323931 /SEG=NC_001145:-815650,818580 /DEF=BUL1p is putatively involved in specifying ubiquitination substrates by binding ubiquitin ligase RSP5p under specific conditions /NOTE=Bul1p; go_component: plasma membrane [goid GO:0005886] [evidence IPI] [pmid 8668140]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 12709439]; go_process: mitochondrion inheritance [goid GO:0000001] [evidence IGI] [pmid 10366593]; go_process: protein monoubiquitination [goid GO:0006513] [evidence IMP,IPI] [pmid 8668140]; go_process: protein polyubiquitination [goid GO:0000209] [evidence IMP,IPI] [pmid 8668140] --- --- --- --- --- --- S0004888 // BUL1 SGDID:S0004888, Chr XIII from 818580-815650, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018944 // cdna:Genscan chromosome:SGD1:XIII:815542:818580:-1 // ensembl // 11 // --- /// GENEFINDER00000021931 // cdna:GeneFinder chromosome:SGD1:XIII:815542:818580:-1 // ensembl // 11 // --- /// YMR275C // cdna:known chromosome:SGD1:XIII:815650:818580:-1 gene:YMR275C // ensembl // 11 // --- --- No cerevisiae_gene -2.16678991678822 -1.93212249756527 -1.01945542201101 -1.78927785870596 1.1080068762805 Max fold change below threshold 4 2.16678991678822 Max fold change at or above threshold 0.676229326530884 -0.923864724121841 -0.786821149594168 1.03445654718513 542.591041564941 205.489687180329 0.378719277391045 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776675_at YOL103W.S1 Myo-inositol transporter with strong similarity to the major myo-inositol transporter Itr1p, member of the sugar transporter superfamily; expressed constitutively 2.16650662765256 560.571411132813 1033.26419067383 ITR2 15798 // myo-inositol transport // inferred from mutant phenotype 16020 // membrane // inferred from sequence similarity 5365 // myo-inositol transporter activity // inferred from sequence similarity /// 5365 // myo-inositol transporter activity // inferred from mutant phenotype 1090.38146972656 503.290161132813 617.852661132813 976.146911621094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL103W /GEN=ITR2 /DB_XREF=GI:37362691 /SEG=NC_001147:+124000,125829 /DEF=member of sugar transporter superfamily /NOTE=Itr2p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 2040626]; go_function: myo-inositol transporter activity [goid GO:0005365] [evidence IMP,ISS] [pmid 2040626]; go_process: myo-inositol transport [goid GO:0015798] [evidence IMP] [pmid 2040626] --- --- --- --- --- S0005463 // span:108-130,154-176,183-200,205-227,240-262,267-289,358-380,395-417,424-446,468-490,503-525,530-552 // numtm:12 S0005463 // ITR2 SGDID:S0005463, Chr XV from 124000-125829, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022750 // cdna:GeneFinder chromosome:SGD1:XV:123991:125829:1 // ensembl // 11 // --- /// GENSCAN00000017384 // cdna:Genscan chromosome:SGD1:XV:124918:125829:1 // ensembl // 11 // --- /// YOL103W // cdna:known chromosome:SGD1:XV:124000:125829:1 gene:YOL103W // ensembl // 11 // --- --- No cerevisiae_gene -1.42032255538343 -2.16650662765256 -1.28179268919092 -1.76479205855872 -1.1170259893726 Max fold change below threshold 4 2.16650662765256 Max fold change at or above threshold 1.04514361676667 -1.04572758407532 -0.637723874192075 0.638307841500727 796.91780090332 280.787888014014 0.352342346595516 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776634_at YBR161W.S1 Probable catalytic subunit of a mannosylinositol phosphorylceramide (MIPC) synthase, forms a complex with probable regulatory subunit Csg2p; function in sphingolipid biosynthesis is overlapping with that of Sur1p 2.16616913277542 933.437103271484 920.621765136719 CSH1 6688 // glycosphingolipid biosynthesis // inferred from mutant phenotype /// 6688 // glycosphingolipid biosynthesis // inferred from sequence similarity /// 30148 // sphingolipid biosynthesis // inferred from mutant phenotype 324 // vacuole (sensu Fungi) // inferred from direct assay 30 // mannosyltransferase activity // inferred from genetic interaction /// 30 // mannosyltransferase activity // inferred from mutant phenotype /// 16757 // transferase activity, transferring glycosyl groups // inferred from sequence similarity 863.409729003906 987.419677734375 879.454528808594 977.833801269531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR161W /GEN=CSH1 /DB_XREF=GI:6319637 /SEG=NC_001134:+561591,562721 /DEF=Probable catalytic subunit of a mannosylinositol phosphorylceramide (MIPC) synthase, forms a complex with probable regulatory subunit Csg2p; function in sphingolipid biosynthesis is overlapping with that of Sur1p /NOTE=Csh1p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: mannosyltransferase activity [goid GO:0000030] [evidence IGI,IMP] [pmid 12954640]; go_function: transferase activity, transferring glycosyl groups [goid GO:0016757] [evidence ISS] [pmid 9653120]; go_process: sphingolipid biosynthesis [goid GO:0030148] [evidence IMP] [pmid 12954640] --- --- --- --- --- S0000365 // span:7-29,201-220,274-296 // numtm:3 S0000365 // CSH1 SGDID:S0000365, Chr II from 561629-562759, Verified ORF // sgd // 10 // --- /// GENSCAN00000021269 // cdna:Genscan chromosome:SGD1:II:561629:562759:1 // ensembl // 10 // --- /// YBR161W // cdna:known chromosome:SGD1:II:561629:562759:1 gene:YBR161W // ensembl // 10 // --- --- No cerevisiae_gene 2.16616913277542 1.1436281577155 -1.21310273289967 1.01858306579797 1.13252580834088 Max fold change below threshold 4 2.16616913277542 Max fold change at or above threshold -0.984062076780515 0.934109145565477 -0.735883010756174 0.785835941971213 927.029434204102 64.6500934253409 0.0697389867462472 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772139_at YHR030C.S1 Serine/threonine MAP kinase involved in regulating the maintenance of cell wall integrity and progression through the cell cycle; regulated by the PKC1-mediated signaling pathway 2.166139158106 3628.24291992188 1870.23205566406 SLT2 6468 // protein amino acid phosphorylation // inferred from sequence similarity /// 7047 // cell wall organization and biogenesis // traceable author statement /// 7165 // signal transduction // inferred from mutant phenotype 5634 // nucleus // inferred from genetic interaction /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5934 // bud tip // inferred from direct assay 4707 // MAP kinase activity // inferred from sequence similarity 1844.75524902344 3995.99658203125 3260.4892578125 1895.70886230469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR030C /GEN=SLT2 /DB_XREF=GI:6321819 /SEG=NC_001140:-168882,170336 /DEF=Suppressor of lyt2 /NOTE=Slt2p; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 12361575]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IGI] [pmid 10523653]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12361575]; go_function: MAP kinase activity [goid GO:0004707] [evidence ISS] [pmid 8386319]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence TAS] [pmid 10594829]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence ISS] [pmid 8386319]; go_process: signal transduction [goid GO:0007165] [evidence IMP] [pmid 8386319] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 3.0E-78 /// hanks // 3.1.7 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; PCTAIRE1 // 2.0E-78 --- --- S0001072 // SLT2 SGDID:S0001072, Chr VIII from 170336-168882, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000016578 // cdna:Genscan chromosome:SGD1:VIII:168882:170336:-1 // ensembl // 10 // --- /// GENEFINDER00000020312 // cdna:GeneFinder chromosome:SGD1:VIII:168882:170336:-1 // ensembl // 10 // --- /// YHR030C // cdna:known chromosome:SGD1:VIII:168882:170336:-1 gene:YHR030C // ensembl // 10 // --- --- No cerevisiae_gene -1.15063287631056 2.166139158106 -1.17952189207605 1.76743731155584 1.02762079864428 Max fold change below threshold 4 2.166139158106 Max fold change at or above threshold -0.854352109335155 1.17765857231684 0.482916092096768 -0.806222555078451 2749.23748779297 1058.67619320726 0.38507993503942 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775596_at YKR025W.S1 RNA polymerase III subunit C37 2.16592510270432 349.766448974609 662.118377685547 RPC37 6383 // transcription from RNA polymerase III promoter // traceable author statement 5666 // DNA-directed RNA polymerase III complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 629.971557617188 290.855651855469 408.67724609375 694.265197753906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR025W /GEN=RPC37 /DB_XREF=GI:6322877 /SEG=NC_001143:+487413,488261 /DEF=RNA polymerase III subunit C37 /NOTE=Rpc37p; go_component: DNA-directed RNA polymerase III complex [goid GO:0005666] [evidence TAS] [pmid 8246845]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 8246845]; go_process: transcription from Pol III promoter [goid GO:0006383] [evidence TAS] --- --- --- --- --- --- S0001733 // RPC37 SGDID:S0001733, Chr XI from 487413-488261, Verified ORF // sgd // 11 // --- /// GENSCAN00000018439 // cdna:Genscan chromosome:SGD1:XI:487413:488261:1 // ensembl // 11 // --- /// GENEFINDER00000023108 // cdna:GeneFinder chromosome:SGD1:XI:487413:488261:1 // ensembl // 11 // --- /// YKR025W // cdna:known chromosome:SGD1:XI:487413:488261:1 gene:YKR025W // ensembl // 11 // --- --- No cerevisiae_gene 1.2135818267465 -2.16592510270432 -1.01797528581893 -1.54148919138178 1.10205800461834 Max fold change below threshold 4 2.16592510270432 Max fold change at or above threshold 0.658057403408045 -1.14117884612494 -0.516056639441313 0.999178082158207 505.942413330078 188.477697606271 0.372527964923367 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770226_at YIL151C.S1 Hypothetical protein 2.16556857896953 266.789482116699 411.307846069336 --- --- --- --- 387.137084960938 221.388137817383 312.190826416016 435.478607177734 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL151C /GEN=RRD1 /DB_XREF=GI:6322040 /SEG=NC_001141:-57338,60694 /DEF=Hypothetical ORF /NOTE=Yil151cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001413 // YIL151C SGDID:S0001413, Chr IX from 60694-57338, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016361 // cdna:Genscan chromosome:SGD1:IX:57338:60694:-1 // ensembl // 11 // --- /// GENEFINDER00000019023 // cdna:GeneFinder chromosome:SGD1:IX:57338:60682:-1 // ensembl // 11 // --- /// YIL151C // cdna:known chromosome:SGD1:IX:57338:60694:-1 gene:YIL151C // ensembl // 11 // --- --- No cerevisiae_gene -2.16556857896953 -1.74868034384153 1.15941112628479 -1.24006553749613 1.12486926232261 Max fold change below threshold 4 2.16556857896953 Max fold change at or above threshold 0.514807361680284 -1.25960686611528 -0.28752477842662 1.03232428286162 339.048664093018 93.4105151701089 0.275507692737824 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779420_at YKL079W.S1 Protein that interacts with Myo2p, proposed to be involved in exocytosis; N-terminal domain is related to the motor domain of kinesins 2.16543965076109 524.537887573242 1018.90689086914 SMY1 6887 // exocytosis // inferred from genetic interaction 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // traceable author statement 3774 // motor activity // inferred from sequence similarity 992.072570800781 568.764953613281 480.310821533203 1045.7412109375 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL079W /GEN=SMY1 /DB_XREF=GI:6322771 /SEG=NC_001143:+286248,288218 /DEF=not believed to act as a kinesin, colocalizes with Myo2p /NOTE=Smy1p; go_component: bud neck [goid GO:0005935] [evidence TAS] [pmid 9153752]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 9472039]; go_function: motor activity [goid GO:0003774] [evidence ISS] [pmid 9472039]; go_process: exocytosis [goid GO:0006887] [evidence IGI] [pmid 9472039] --- --- --- --- --- --- S0001562 // SMY1 SGDID:S0001562, Chr XI from 286248-288218, Verified ORF // sgd // 11 // --- /// YKL079W // cdna:known chromosome:SGD1:XI:286248:288218:1 gene:YKL079W // ensembl // 11 // --- --- No cerevisiae_gene -2.16543965076109 -1.74425756105099 -1.18278004284436 -2.06548036463967 1.05409749419178 Max fold change below threshold 4 2.16543965076109 Max fold change at or above threshold 0.763692869670844 -0.703412837281715 -1.0099784569614 0.949698424572275 771.722389221191 288.532458964246 0.373881155962609 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773585_at YJL046W.S1 Hypothetical protein 2.16539203199505 130.877098083496 145.605644226074 --- --- --- --- 118.869110107422 108.278381347656 153.475814819336 172.342178344727 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL046W /GEN=RTT101 /DB_XREF=GI:6322415 /SEG=NC_001142:+352176,353531 /DEF=Hypothetical ORF /NOTE=Yjl046wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003582 // YJL046W SGDID:S0003582, Chr X from 352176-353531, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024107 // cdna:Genscan chromosome:SGD1:X:352452:353531:1 // ensembl // 11 // --- /// YJL046W // cdna:known chromosome:SGD1:X:352176:353531:1 gene:YJL046W // ensembl // 11 // --- --- No cerevisiae_gene -1.07113510231407 -1.0978101872964 2.16539203199505 1.29113286606285 1.44984830953122 Max fold change below threshold 4 2.16539203199505 Max fold change at or above threshold -0.649600746200889 -1.00473457845385 0.51084929881195 1.14348602584279 138.241371154785 29.8217961735106 0.215722659030341 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774463_at SPAC25B8.16.S1 --- 2.16484386159194 --- --- --- --- 1.0126736164093 0.953301787376404 0.531742453575134 0.467781364917755 0.696289002895355 0.919434010982513 0.850341975688934 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25B8.16 /DEF=ribonuclease subunit (predicted) --- --- --- --- --- --- SPAC25B8.16 // |||ribonuclease subunit |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.81233541638169 -1.06228020320438 -1.64997935321769 -1.90444379530101 -2.16484386159194 Max fold change below threshold 0 2.16484386159194 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773923_at YOR192C.S1 Hypothetical protein 2.16474656017429 35.2069664001465 68.2403450012207 --- 6810 // transport // inferred from sequence similarity 16020 // membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity 70.2115097045898 32.4340553283691 37.9798774719238 66.2691802978516 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR192C /GEN=RIS1 /DB_XREF=GI:6324766 /SEG=NC_001147:-698768,700567 /DEF=Hypothetical ORF /NOTE=Yor192cp; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 9235906]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 9235906]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 9235906] --- --- --- --- --- S0005718 // span:43-62,77-99,112-134,167-189,196-218,274-296,372-389,399-421,442-464,484-506 // numtm:10 S0005718 // YOR192C SGDID:S0005718, Chr XV from 700567-698768, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022787 // cdna:GeneFinder chromosome:SGD1:XV:698768:700129:-1 // ensembl // 11 // --- /// YOR192C // cdna:known chromosome:SGD1:XV:698768:700567:-1 gene:YOR192C // ensembl // 11 // --- GENSCAN00000017609 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene -1.64398728721892 -2.16474656017429 -1.08633473050697 -1.84865024265791 -1.05948963589136 Max fold change below threshold 4 2.16474656017429 Max fold change at or above threshold 0.959258612204959 -1.00085792971023 -0.713108056099277 0.754707373604549 51.7236557006836 19.2730654368689 0.372616072390533 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773077_at SPCC14G10.03c.S1 --- 2.16449123264274 --- --- --- --- 8.93367862701416 5.40394449234009 12.2808628082275 6.96117448806763 0.219482004642487 0.274170011281967 0.0537109375 0.018554700538516 A A M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC14G10.03c /DEF=proteasome maturation factor (predicted) --- --- --- --- --- --- SPCC14G10.03c // |||proteasome maturation factor |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- U97375 // gb // 4 // Cross Hyb Matching Probes /// U97376 // gb // 2 // Cross Hyb Matching Probes No No -1.65390718767446 -1.65317734844933 -2.16449123264274 1.37467031454344 -1.2833579509216 Max fold change below threshold 4 2.16449123264274 Max fold change at or above threshold AAAAMP No 4 0 AAMP 2 1 1 No No x = 1
1777919_at YKL171W.S1 Hypothetical protein 2.16443221179761 1194.05877685547 1255.33441162109 --- 6508 // proteolysis and peptidolysis // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay 4672 // protein kinase activity // inferred from sequence similarity 1252.59790039063 1341.11364746094 1047.00390625 1258.07092285156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL171W /GEN=EBP2 /DB_XREF=GI:6322677 /SEG=NC_001143:+127480,130266 /DEF=Hypothetical ORF /NOTE=Ykl171wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 9020587]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence IPI] [pmid 11595789] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 0.0010 /// ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 3.0E-21 /// hanks // 2.1.8 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DdMLCK // 3.0E-34 --- --- S0001654 // YKL171W SGDID:S0001654, Chr XI from 127480-130266, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018293 // cdna:Genscan chromosome:SGD1:XI:127480:130266:1 // ensembl // 11 // --- /// GENEFINDER00000023159 // cdna:GeneFinder chromosome:SGD1:XI:127480:130266:1 // ensembl // 11 // --- /// YKL171W // cdna:known chromosome:SGD1:XI:127480:130266:1 gene:YKL171W // ensembl // 11 // --- --- No cerevisiae_gene -2.16443221179761 1.0706657316308 1.03273742988449 -1.19636411374719 1.00436933708673 Max fold change below threshold 4 2.16443221179761 Max fold change at or above threshold 0.22286613362426 0.92989978311405 -1.41934869030939 0.266582773571076 1224.69659423828 125.193117943096 0.102223782226619 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778963_at YKL021C.S1 Protein essential for cell growth and replication of M dsRNA virus; contains four beta-transducin repeats 2.16437212184336 146.819568634033 186.473091125488 MAK11 42273 // ribosomal large subunit biogenesis // inferred from mutant phenotype 5624 // membrane fraction // inferred from direct assay --- 182.278396606445 123.191352844238 170.447784423828 190.667785644531 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL021C /GEN=MAK11 /DB_XREF=GI:6322831 /SEG=NC_001143:-396987,398393 /DEF=essential for cell growth and replication of M dsRNA virus; contains four beta-transducin repeats /NOTE=Mak11p; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 2826479]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: host-pathogen interaction [goid GO:0030383] [evidence IMP] [pmid 2826479]; go_process: ribosomal large subunit biogenesis [goid GO:0042273] [evidence IMP] [pmid 7739558] --- --- --- --- --- --- S0001504 // MAK11 SGDID:S0001504, Chr XI from 398393-396987, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018401 // cdna:Genscan chromosome:SGD1:XI:396987:398231:-1 // ensembl // 11 // --- /// GENEFINDER00000023056 // cdna:GeneFinder chromosome:SGD1:XI:396987:398231:-1 // ensembl // 11 // --- /// YKL021C // cdna:known chromosome:SGD1:XI:396987:398393:-1 gene:YKL021C // ensembl // 11 // --- --- No cerevisiae_gene 2.16437212184336 -1.47963629262937 -1.02933073753068 -1.06940901122657 1.04602514172976 Max fold change below threshold 4 2.16437212184336 Max fold change at or above threshold 0.518751412477782 -1.44205696601117 0.126151579870033 0.797153973663351 166.646329879761 30.1340224829828 0.180826199441207 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780200_at YMR143W.S1 Protein component of the small (40S) ribosomal subunit; identical to Rps16Bp and has similarity to E. coli S9 and rat S16 ribosomal proteins 2.16396921175837 2502.36975097656 4525.28625488281 RPS16A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 5039.83251953125 2675.76342773438 2328.97607421875 4010.73999023438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR143W /GEN=RPS16A /DB_XREF=GI:9755341 /SEG=NC_001145:+551927,552902 /DEF=Protein component of the small (40S) ribosomal subunit; identical to Rps16Bp and has similarity to E. coli S9 and rat S16 ribosomal proteins /NOTE=Rps16ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004751 // RPS16A SGDID:S0004751, Chr XIII from 551927-551950,552495-552902, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021873 // cdna:GeneFinder chromosome:SGD1:XIII:551927:552902:1 // ensembl // 11 // --- /// YMR143W // cdna:known chromosome:SGD1:XIII:551927:552902:1 gene:YMR143W // ensembl // 11 // --- --- No cerevisiae_gene -1.12857564133923 -1.88351199784451 -1.55207599800005 -2.16396921175837 -1.25658420436193 Max fold change below threshold 4 2.16396921175837 Max fold change at or above threshold 1.22154163004161 -0.670856970688446 -0.948454569177007 0.397769909823845 3513.82800292969 1249.24478959394 0.355522463977282 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779599_at YDL075W.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl31Ap and has similarity to rat L31 ribosomal protein; associates with the karyopherin Sxm1p /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl31Bp and has similarity to rat L31 ribosomal protein; associates with the karyopherin Sxm1p 2.16388058555441 3081.17529296875 5008.82397460938 RPL31B /// RPL31A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 5737.9990234375 3510.63354492188 2651.71704101563 4279.64892578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL075W /GEN=RPL31A /DB_XREF=GI:6320128 /SEG=NC_001136:+322226,322988 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl31Bp and has similarity to rat L31 ribosomal protein; associates with the karyopherin Sxm1p /NOTE=Rpl31ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0002233 // RPL31A SGDID:S0002233, Chr IV from 322226-322282,322704-322988, intron sequence removed, Verified ORF // sgd // 11 // --- /// YDL075W // cdna:known chromosome:SGD1:IV:322226:322988:1 gene:YDL075W // ensembl // 11 // --- GENEFINDER00000023756 // ensembl // 6 // Cross Hyb Matching Probes /// M15162 // gb // 5 // Negative Strand Matching Probes No cerevisiae_gene -1.18535259014096 -1.63446254073926 -1.6959634027964 -2.16388058555441 -1.34076395586351 Max fold change below threshold 4 2.16388058555441 Max fold change at or above threshold 1.2923922141548 -0.407921335933686 -1.0635961158803 0.17912523765919 4044.99963378906 1309.97337426365 0.323850060039824 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771462_at YLR234W.S1 DNA Topoisomerase III, conserved protein that functions in a complex with Sgs1p and Rmi1p to relax single-stranded negatively-supercoiled DNA preferentially, involved in telomere stability and regulation of mitotic recombination 2.16328403286987 36.6922225952148 23.642915725708 TOP3 18 // regulation of DNA recombination // inferred from mutant phenotype /// 7004 // telomerase-dependent telomere maintenance // inferred from mutant phenotype /// 7131 // meiotic recombination // inferred from mutant phenotype /// 7131 // meiotic recombination // inferred from genetic interaction 5634 // nucleus // inferred from curator /// 31422 // RecQ helicase-Topo III complex // inferred from physical interaction 3917 // DNA topoisomerase type I activity // inferred from direct assay 25.15110206604 18.9754676818848 54.4089775085449 22.134729385376 0.0461426004767418 0.0561522990465164 0.014160200022161 0.0239257998764515 P M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR234W /GEN=TOP3 /DB_XREF=GI:6323263 /SEG=NC_001144:+609785,611755 /DEF=DNA Topoisomerase III /NOTE=Top3p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 1324925]; go_function: DNA topoisomerase type I activity [goid GO:0003917] [evidence IDA] [pmid 1324925]; go_process: meiotic recombination [goid GO:0007131] [evidence IGI,IMP] [pmid 1328869]; go_process: regulation of DNA recombination [goid GO:0000018] [evidence IMP] [pmid 1328869]; go_process: telomerase-dependent telomere maintenance [goid GO:0007004] [evidence IMP] [pmid 7708702] --- --- --- --- --- --- S0004224 // TOP3 SGDID:S0004224, Chr XII from 609785-611755, Verified ORF // sgd // 11 // --- /// GENSCAN00000018003 // cdna:Genscan chromosome:SGD1:XII:609785:611755:1 // ensembl // 11 // --- /// GENEFINDER00000024629 // cdna:GeneFinder chromosome:SGD1:XII:609785:611755:1 // ensembl // 11 // --- /// YLR234W // cdna:known chromosome:SGD1:XII:609785:611755:1 gene:YLR234W // ensembl // 11 // --- YLR235C // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene 1.14765409052236 -1.32545360608165 -1.01732938192771 2.16328403286987 -1.13627330283319 Max fold change below threshold 4 2.16328403286987 Max fold change at or above threshold -0.3066965495361 -0.684262218993637 1.48207018132755 -0.491111412797817 30.1675691604614 16.3564510328178 0.542186576114825 PPMPPP Called_P_>2EXP 4 0 PMPP 0 3 1 Yes Yes 2 < x = 3
1772310_at YLR207W.S1 Resident protein of the ER membrane that plays a central role in ER-associated protein degradation (ERAD), forms HRD complex with Hrd1p and ERAD determinants that engages in lumen to cytosol communication and coordination of ERAD events 2.1630963544874 300.654792785645 569.230255126953 HRD3 30433 // ER-associated protein catabolism // inferred from direct assay 5783 // endoplasmic reticulum // traceable author statement 4842 // ubiquitin-protein ligase activity // inferred from direct assay 531.432434082031 245.681350708008 355.628234863281 607.028076171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR207W /GEN=HRD3 /DB_XREF=GI:6323236 /SEG=NC_001144:+556790,559291 /DEF=HMG-CoA Reductase Degradation--the HRD complex is responsible for the endoplasmic reticulum (ER)-associated degradation (ERAD) of numerous ER-resident proteins. /NOTE=Hrd3p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS] [pmid 11516167]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence IDA] [pmid 11390656]; go_process: ER-associated protein catabolism [goid GO:0030433] [evidence IDA] [pmid 12105183] --- --- --- --- --- S0004197 // span:767-789 // numtm:1 S0004197 // HRD3 SGDID:S0004197, Chr XII from 556790-559291, Verified ORF // sgd // 11 // --- /// GENSCAN00000017979 // cdna:Genscan chromosome:SGD1:XII:556790:559291:1 // ensembl // 11 // --- /// GENEFINDER00000024679 // cdna:GeneFinder chromosome:SGD1:XII:556919:559291:1 // ensembl // 11 // --- /// YLR207W // cdna:known chromosome:SGD1:XII:556790:559291:1 gene:YLR207W // ensembl // 11 // --- --- No cerevisiae_gene -1.66614933114267 -2.1630963544874 1.12898695519197 -1.49434826030148 1.14224883022133 Max fold change below threshold 4 2.1630963544874 Max fold change at or above threshold 0.587094644087007 -1.15156311165495 -0.482589260010731 1.04705772757867 434.942523956299 164.351542119387 0.377869564521818 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780234_at YMR154C.S1 Calpain-like protease involved in proteolytic activation of Ri0m101p in response to alkaline pH; has similarity to A. nidulans palB 2.16264464094307 171.196273803711 98.2901268005371 RIM13 16485 // protein processing // inferred from genetic interaction /// 16485 // protein processing // inferred from mutant phenotype --- 4197 // cysteine-type endopeptidase activity // inferred from direct assay 86.7940826416016 154.687789916992 187.70475769043 109.786170959473 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR154C /GEN=RIM13 /DB_XREF=GI:6323804 /SEG=NC_001145:-565998,568181 /DEF=Regulator of IME2 (RIM) /NOTE=Rim13p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: cysteine-type endopeptidase activity [goid GO:0004197] [evidence IDA] [pmid 9928935]; go_process: protein processing [goid GO:0016485] [evidence IGI,IMP] [pmid 9928935] --- --- --- --- --- --- S0004763 // RIM13 SGDID:S0004763, Chr XIII from 568181-565998, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018842 // cdna:Genscan chromosome:SGD1:XIII:565998:568181:-1 // ensembl // 11 // --- /// YMR154C // cdna:known chromosome:SGD1:XIII:565998:568181:-1 gene:YMR154C // ensembl // 11 // --- --- No cerevisiae_gene 2.09433633542933 1.78223889473829 1.44787722236648 2.16264464094307 1.26490386922818 Max fold change below threshold 4 2.16264464094307 Max fold change at or above threshold -1.06120524876922 0.441411734282484 1.17214008152094 -0.552346567034209 134.743200302124 45.1836416340136 0.335331516044608 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775457_at YPL079W.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl21Ap and has similarity to rat L21 ribosomal protein /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl21Bp and has similarity to rat L21 ribosomal protein 2.16225171050015 1682.14654541016 3386.27758789063 RPL21B /// RPL21A 6412 // protein biosynthesis // traceable author statement /// 30447 // filamentous growth // inferred from mutant phenotype 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3440.48876953125 1773.13293457031 1591.16015625 3332.06640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL079W /GEN=RPL21B /DB_XREF=GI:6325178 /SEG=NC_001148:+406631,407534 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl21Ap and has similarity to rat L21 ribosomal protein /NOTE=Rpl21bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0006000 // RPL21B SGDID:S0006000, Chr XVI from 406633-406643,407065-407536, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000017127 // cdna:Genscan chromosome:SGD1:XVI:407093:407536:1 // ensembl // 11 // --- /// YPL079W // cdna:known chromosome:SGD1:XVI:406633:407536:1 gene:YPL079W // ensembl // 11 // --- GENEFINDER00000020715 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 1.36147349726183 -1.9403445181424 -1.17138482040349 -2.16225171050015 -1.03253907637551 Max fold change below threshold 4 2.16225171050015 Max fold change at or above threshold 0.917587259771766 -0.770577587457458 -0.954821430956039 0.807811758641732 2534.21206665039 987.673589873382 0.38973596680046 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770406_at SPAC3H1.11.S1 --- 2.16218973618641 --- --- --- --- 0.941065490245819 1.60978066921234 2.03476214408875 0.961482584476471 0.985840022563934 0.976073980331421 0.953857004642487 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H1.11 /DEF=zinc finger protein --- --- --- --- --- --- SPAC3H1.11 // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.40866670645936 1.71059366845111 1.65918687821275 2.16218973618641 1.02169572090601 Max fold change below threshold 0 2.16218973618641 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777474_at YPR058W.S1 Putative mitochondrial inner membrane transporter, member of the mitochondrial carrier (MCF) family 2.16215005322362 1065.05889892578 599.276611328125 YMC1 6810 // transport // inferred from sequence similarity 5743 // mitochondrial inner membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity 572.982727050781 891.2431640625 1238.87463378906 625.570495605469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR058W /GEN=YMC1 /DB_XREF=GI:6325315 /SEG=NC_001148:+673746,674669 /DEF=Putative mitochondrial inner membrane transporter, member of the mitochondrial carrier (MCF) family /NOTE=Ymc1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence ISS] [pmid 10930523]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 8488731]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 8488731] --- --- --- --- --- --- S0006262 // YMC1 SGDID:S0006262, Chr XVI from 673748-674671, Verified ORF // sgd // 11 // --- /// GENSCAN00000017230 // cdna:Genscan chromosome:SGD1:XVI:673748:674671:1 // ensembl // 11 // --- /// YPR058W // cdna:known chromosome:SGD1:XVI:673748:674671:1 gene:YPR058W // ensembl // 11 // --- GENEFINDER00000020714 // ensembl // 6 // Negative Strand Matching Probes /// YPR059C // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene 1.6922815043308 1.55544508060452 -1.20337404956001 2.16215005322362 1.09177897704764 Max fold change below threshold 4 2.16215005322362 Max fold change at or above threshold -0.850267437579489 0.193799375497978 1.33421910259552 -0.677751040514005 832.167755126953 304.827653772101 0.366305533823042 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779908_at YJL058C.S1 Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p-Slm1p-Slm2p), a membrane-associated complex that regulates cell cycle-dependent actin cytoskeletal dynamics during polarized growth and cell wall integrity 2.16160118024354 70.1296253204346 108.8564453125 BIT61 --- 5737 // cytoplasm // inferred from direct assay --- 107.123680114746 77.0797653198242 63.1794853210449 110.589210510254 0.000244141003349796 0.00122069998178631 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL058C /GEN=BIT61 /DB_XREF=GI:6322403 /SEG=NC_001142:-326158,327789 /DEF=Cytoplasmic protein that binds Tor2p /NOTE=Bit61p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003594 // BIT61 SGDID:S0003594, Chr X from 327789-326158, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024095 // cdna:Genscan chromosome:SGD1:X:326158:327789:-1 // ensembl // 11 // --- /// GENEFINDER00000024491 // cdna:GeneFinder chromosome:SGD1:X:326158:327789:-1 // ensembl // 11 // --- /// YJL058C // cdna:known chromosome:SGD1:X:326158:327789:-1 gene:YJL058C // ensembl // 11 // --- --- No cerevisiae_gene -2.16160118024354 -1.38977693653142 1.15029348158578 -1.69554531143139 1.03235074067466 Max fold change below threshold 4 2.16160118024354 Max fold change at or above threshold 0.762862043974055 -0.537110958242742 -1.13856349347365 0.912812407742339 89.4930353164673 23.1111836504982 0.258245611725783 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778778_at YEL043W.S1 Hypothetical protein 2.16139123343728 830.039337158203 1727.46221923828 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 1709.61218261719 790.977661132813 869.101013183594 1745.31225585938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL043W /GEN=IES6 /DB_XREF=GI:6320792 /SEG=NC_001137:+70478,73348 /DEF=Hypothetical ORF /NOTE=Yel043wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.8.Eukaryotic DNA topoisomerase I, dispensable insert domain // All alpha proteins; Long alpha-hairpin; Eukaryotic DNA topoisomerase I, dispensable insert domain; Eukaryotic DNA topoisomerase I, dispensable insert domain // 6.19999980926514 --- S0000769 // YEL043W SGDID:S0000769, Chr V from 70478-73348, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000019664 // cdna:GeneFinder chromosome:SGD1:V:70478:73348:1 // ensembl // 11 // --- /// GENSCAN00000016767 // cdna:Genscan chromosome:SGD1:V:71414:73348:1 // ensembl // 11 // --- /// YEL043W // cdna:known chromosome:SGD1:V:70478:73348:1 gene:YEL043W // ensembl // 11 // --- --- No cerevisiae_gene -1.49454653488042 -2.16139123343728 -1.26674352373245 -1.96710411872002 1.02088197171568 Max fold change below threshold 4 2.16139123343728 Max fold change at or above threshold 0.829676404348923 -0.939266877363215 -0.788830794761226 0.898421267775518 1278.75077819824 519.312592428198 0.406109307053489 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776702_at YIL129C.S1 Protein involved in cell morphogenesis and proliferation, associated with protein kinase Cbk1p; mutants activate OCH1 transcription 2.16130559409581 413.586868286133 800.061126708984 TAO3 902 // cellular morphogenesis // inferred from genetic interaction /// 902 // cellular morphogenesis // inferred from mutant phenotype /// 903 // cellular morphogenesis during vegetative growth // inferred from genetic interaction /// 7114 // cell budding // inferred from genetic interaction /// 7114 // cell budding // inferred from mutant phenotype 131 // incipient bud site // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5933 // bud // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay --- 776.167724609375 360.135650634766 467.0380859375 823.954528808594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL129C /GEN=TAO3 /DB_XREF=GI:6322062 /SEG=NC_001141:-106107,113237 /DEF=Identified in a hunt for mutants that activate OCH1 transcription /NOTE=Tao3p; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 12972564]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 11854408]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 12972564]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: budding [goid GO:0007114] [evidence IGI,IMP] [pmid 11854408]; go_process: cellular morphogenesis [goid GO:0000902] [evidence IGI,IMP] [pmid 11854408] --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 1.60000002384186 --- S0001391 // TAO3 SGDID:S0001391, Chr IX from 113237-106107, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016378 // cdna:Genscan chromosome:SGD1:IX:106107:113237:-1 // ensembl // 11 // --- /// GENEFINDER00000019142 // cdna:GeneFinder chromosome:SGD1:IX:106107:113237:-1 // ensembl // 11 // --- /// YIL129C // cdna:known chromosome:SGD1:IX:106107:113237:-1 gene:YIL129C // ensembl // 11 // --- --- No cerevisiae_gene -2.16130559409581 -2.15520935858842 1.09859018810808 -1.66189385401268 1.06156762602216 Max fold change below threshold 4 2.16130559409581 Max fold change at or above threshold 0.742102537852001 -1.08104416613268 -0.612573500618532 0.95151512889921 606.823997497559 228.194512852601 0.376047278607368 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778065_at YOR380W.S1 Transcriptional repressor involved in the control of multidrug resistance; negatively regulates expression of the PDR5 gene; member of the Gal4p family of zinc cluster proteins 2.16113251235985 346.917861938477 276.444763183594 RDR1 9410 // response to xenobiotic stimulus // inferred from mutant phenotype 5634 // nucleus // traceable author statement 3700 // transcription factor activity // inferred from genetic interaction /// 3700 // transcription factor activity // inferred from mutant phenotype /// 3700 // transcription factor activity // inferred from sequence similarity 248.172149658203 302.955108642578 390.880615234375 304.717376708984 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR380W /GEN=RDR1 /DB_XREF=GI:6324956 /SEG=NC_001147:+1051286,1052926 /DEF=Repressor of drug resistance /NOTE=Rdr1p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 11882665]; go_function: transcription factor activity [goid GO:0003700] [evidence IGI,IMP,ISS] [pmid 11882665]; go_process: response to xenobiotic stimulus [goid GO:0009410] [evidence IMP] [pmid 11882665] --- --- --- --- --- --- S0005907 // RDR1 SGDID:S0005907, Chr XV from 1051286-1052926, Verified ORF // sgd // 11 // --- /// GENSCAN00000017826 // cdna:Genscan chromosome:SGD1:XV:1051286:1052926:1 // ensembl // 11 // --- /// GENEFINDER00000022708 // cdna:GeneFinder chromosome:SGD1:XV:1051286:1052926:1 // ensembl // 11 // --- /// YOR380W // cdna:known chromosome:SGD1:XV:1051286:1052926:1 gene:YOR380W // ensembl // 11 // --- --- No cerevisiae_gene -2.16113251235985 1.22074579705992 -1.04945770115465 1.5750381973671 1.22784678751689 Max fold change below threshold 4 2.16113251235985 Max fold change at or above threshold -1.07706683758567 -0.147989745557819 1.34315960989561 -0.118103026752118 311.681312561035 58.9649227760022 0.18918337545327 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779901_at SPAPB1A10.14.S1 --- 2.16089332481014 --- --- --- --- 0.705511510372162 1.16843855381012 0.444871872663498 0.326490670442581 0.904784977436066 0.71826171875 0.953857004642487 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1A10.14 /DEF=F-box protein (context dependent) --- --- --- --- --- --- SPAPB1A10.14 // |||F-box protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.27447658144292 1.65615803092108 1.69606570985946 -1.58587574023996 -2.16089332481014 Max fold change below threshold 0 2.16089332481014 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769894_at SPAC23A1.07.S1 --- 2.16080590956321 --- --- --- --- 9.2424488067627 14.3470802307129 19.9711380004883 10.3519248962402 0.274170011281967 0.219482004642487 0.171387001872063 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23A1.07 /DEF=zinc finger protein --- --- --- --- --- --- SPAC23A1.07 // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.92787801351228 1.55230291567481 1.27313713897152 2.16080590956321 1.12004135621133 Max fold change below threshold 4 2.16080590956321 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776429_at YOR295W.S1 Subunit of UAF (upstream activation factor), which is an RNA polymerase I specific transcription stimulatory factor composed of Uaf30p, Rrn5p, Rrn9p, Rrn10p, histones H3 and H4; deletion decreases cellular growth rate 2.15986662140654 58.097469329834 129.203296661377 UAF30 6360 // transcription from RNA polymerase I promoter // inferred from mutant phenotype /// 6360 // transcription from RNA polymerase I promoter // inferred from physical interaction 500 // RNA polymerase I upstream activating factor complex // inferred from mutant phenotype /// 500 // RNA polymerase I upstream activating factor complex // inferred from physical interaction /// 500 // RNA polymerase I upstream activating factor complex // traceable author statement 182 // ribosomal DNA (rDNA) binding // inferred from mutant phenotype /// 182 // ribosomal DNA (rDNA) binding // inferred from physical interaction /// 3701 // RNA polymerase I transcription factor activity // inferred from mutant phenotype /// 3701 // RNA polymerase I transcription factor activity // inferred from physical interaction 119.929176330566 55.526195526123 60.6687431335449 138.477416992188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR295W /GEN=UAF30 /DB_XREF=GI:6324869 /SEG=NC_001147:+869205,869891 /DEF=Topoisomerase 1 and RAD52 epistasis group Interactions /NOTE=Uaf30p; go_component: RNA polymerase I upstream activating factor complex [goid GO:0000500] [evidence IMP,IPI,TAS] [pmid 11500378]; go_function: RNA polymerase I transcription factor activity [goid GO:0003701] [evidence IMP,IPI] [pmid 11500378]; go_function: ribosomal DNA (rDNA) binding [goid GO:0000182] [evidence IMP,IPI] [pmid 11500378]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence IMP,IPI] [pmid 11500378] --- --- --- --- --- --- S0005821 // UAF30 SGDID:S0005821, Chr XV from 869205-869891, Verified ORF // sgd // 11 // --- /// GENSCAN00000017745 // cdna:Genscan chromosome:SGD1:XV:869205:869891:1 // ensembl // 11 // --- /// YOR295W // cdna:known chromosome:SGD1:XV:869205:869891:1 gene:YOR295W // ensembl // 11 // --- --- No cerevisiae_gene 1.34158757257056 -2.15986662140654 1.02456041936066 -1.97678689447343 1.15465995205784 Max fold change below threshold 4 2.15986662140654 Max fold change at or above threshold 0.628705642666139 -0.91210016680018 -0.789067550452303 1.07246207458634 93.6503829956055 41.7982463518555 0.446322214761438 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779198_at YOL088C.S1 Member of the protein disulfide isomerase (PDI) family, exhibits chaperone activity; overexpression suppresses the lethality of a pdi1 deletion but does not complement all Pdi1p functions; undergoes oxidation by Ero1p 2.15954486013449 324.942573547363 189.599411010742 MPD2 6457 // protein folding // inferred from genetic interaction 5783 // endoplasmic reticulum // traceable author statement 3756 // protein disulfide isomerase activity // inferred from mutant phenotype /// 3756 // protein disulfide isomerase activity // traceable author statement 184.663787841797 251.095413208008 398.789733886719 194.535034179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL088C /GEN=MPD2 /DB_XREF=GI:6324484 /SEG=NC_001147:-153911,154744 /DEF=protein disulfide isomerase related protein /NOTE=Mpd2p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS] [pmid 10549279]; go_function: protein disulfide isomerase activity [goid GO:0003756] [evidence IMP,TAS] [pmid 11157982]; go_process: protein folding [goid GO:0006457] [evidence IGI] [pmid 11157982] --- --- --- --- --- S0005448 // span:5-27 // numtm:1 S0005448 // MPD2 SGDID:S0005448, Chr XV from 154744-153911, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017396 // cdna:Genscan chromosome:SGD1:XV:153911:154660:-1 // ensembl // 11 // --- /// GENEFINDER00000022767 // cdna:GeneFinder chromosome:SGD1:XV:153911:154744:-1 // ensembl // 11 // --- /// YOL088C // cdna:known chromosome:SGD1:XV:153911:154744:-1 gene:YOL088C // ensembl // 11 // --- --- No cerevisiae_gene 1.40548511889564 1.35974365165261 1.29156777908278 2.15954486013449 1.0534552358817 Max fold change below threshold 4 2.15954486013449 Max fold change at or above threshold -0.735029063647861 -0.0625176266908347 1.43264554721145 -0.635098856872759 257.270992279053 98.7814061078279 0.383958584808828 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771193_at YOL020W.S1 High affinity tryptophan and tyrosine permease, overexpression confers FK506 resistance 2.15935093867323 1053.17944335938 831.278900146484 TAT2 15801 // aromatic amino acid transport // inferred from direct assay 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from direct assay 15173 // aromatic amino acid transporter activity // inferred from direct assay 800.931274414063 866.905883789063 1239.45300292969 861.626525878906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL020W /GEN=TAT2 /DB_XREF=GI:6324553 /SEG=NC_001147:+286172,287950 /DEF=Tryptophan permease, high affinity /NOTE=Tat2p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 10654085]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12810702]; go_function: aromatic amino acid transporter activity [goid GO:0015173] [evidence IDA] [pmid 10654085]; go_process: aromatic amino acid transport [goid GO:0015801] [evidence IDA] [pmid 10654085] --- --- --- --- --- S0005380 // span:86-105,115-137,158-180,195-217,222-244,264-286,307-329,355-377,405-422,432-454,475-497,515-537 // numtm:12 S0005380 // TAT2 SGDID:S0005380, Chr XV from 286172-287950, Verified ORF // sgd // 11 // --- /// GENSCAN00000017451 // cdna:Genscan chromosome:SGD1:XV:286172:287950:1 // ensembl // 11 // --- /// YOL020W // cdna:known chromosome:SGD1:XV:286172:287950:1 gene:YOL020W // ensembl // 11 // --- --- No cerevisiae_gene 2.15935093867323 1.08237237261495 -1.06024411587881 1.54751480248594 1.0757808483746 Max fold change below threshold 4 2.15935093867323 Max fold change at or above threshold -0.70508808944635 -0.375869380942666 1.48317128003502 -0.402213809646005 942.22917175293 200.397509834292 0.21268446768791 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771948_at YOR308C.S1 66kD U4/U6.U5 snRNP associated protein 2.15917468081774 84.4579200744629 160.697792053223 SNU66 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 31202 // RNA splicing factor activity, transesterification mechanism // inferred from physical interaction 150.294006347656 77.9030685424805 91.0127716064453 171.101577758789 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR308C /GEN=SNU66 /DB_XREF=GI:6324884 /SEG=NC_001147:-894619,896382 /DEF=66kD U4/U6.U5 snRNP associated protein /NOTE=Snu66p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence IDA] [pmid 10377396]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10377396] --- --- --- --- --- --- S0005835 // SNU66 SGDID:S0005835, Chr XV from 896382-894619, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017765 // cdna:Genscan chromosome:SGD1:XV:894619:896322:-1 // ensembl // 10 // --- /// GENEFINDER00000022788 // cdna:GeneFinder chromosome:SGD1:XV:894619:896103:-1 // ensembl // 10 // --- /// YOR308C // cdna:known chromosome:SGD1:XV:894619:896382:-1 gene:YOR308C // ensembl // 10 // --- --- No cerevisiae_gene -2.15917468081774 -1.92924372761647 1.00362804106697 -1.65135072468239 1.13844578314721 Max fold change below threshold 4 2.15917468081774 Max fold change at or above threshold 0.613900334232984 -0.989526565208764 -0.699152504949633 1.07477873592541 122.577856063843 45.1476383677856 0.368318061822448 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772467_s_at YHR054C.S1 Hypothetical protein /// One of 15 subunits of the 'Remodel the Structure of Chromatin' (RSC) complex; non-essential gene required for regulation of ribosomal protein genes and the cell wall/stress response; highly similar to Rsc3p; null mutants are osmosensitive 2.15877739420503 185.249374389648 454.039840698242 RSC30 6355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype 16586 // RSC complex // inferred from physical interaction 3677 // DNA binding // inferred from sequence similarity 360.924713134766 203.309341430664 167.189407348633 547.154968261719 0.00122069998178631 0.000244141003349796 0.00195312988944352 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR054C /GEN=CUP1-1 /DB_XREF=GI:6321845 /SEG=NC_001140:-213186,214250 /DEF=Hypothetical ORF /NOTE=Yhr054cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001096 // YHR054C SGDID:S0001096, Chr VIII from 214250-213186, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0001098 // RSC30 SGDID:S0001098, Chr VIII from 217835-215184, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016602 // cdna:Genscan chromosome:SGD1:VIII:215184:217832:-1 // ensembl // 11 // --- /// GENEFINDER00000020297 // cdna:GeneFinder chromosome:SGD1:VIII:215184:217832:-1 // ensembl // 11 // --- /// YHR054C // cdna:known chromosome:SGD1:VIII:213186:214250:-1 gene:YHR054C // ensembl // 11 // --- /// YHR056C // cdna:known chromosome:SGD1:VIII:215184:217835:-1 gene:YHR056C // ensembl // 11 // --- --- No cerevisiae_gene -1.02943237073343 -1.77524903968987 -1.25046201975084 -2.15877739420503 1.51598089116557 Max fold change below threshold 4 2.15877739420503 Max fold change at or above threshold 0.238011690834792 -0.67076265903484 -0.87902197573623 1.31177294393628 319.644607543945 173.437302369628 0.542594175769987 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771821_at SPCC576.19c.S1 --- 2.15875145519069 --- --- --- --- 5.28343343734741 11.4056196212769 2.69402170181274 3.64975714683533 0.194580003619194 0.014160200022161 0.24609400331974 0.194580003619194 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC576.19c /DEF=dubious --- --- --- --- --- --- SPCC576.19c // |||dubious|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.38504868193244 2.15875145519069 1.15024065981701 -1.96116959035345 -1.44761232728283 Max fold change below threshold 4 2.15875145519069 Max fold change at or above threshold AAPPAA No 4 0 APAA 3 1 0 No No x = 1
1779971_at YPR164W.S1 Protein likely involved in protection against replication-dependent DNA damage; mutants are sensitive to methyl methanesulfonate (MMS); implicated in regulation of Ty1 transposition 2.15814886958651 70.7733306884766 117.9260597229 MMS1 335 // negative regulation of DNA transposition // inferred from mutant phenotype /// 6281 // DNA repair // inferred from genetic interaction /// 6281 // DNA repair // inferred from mutant phenotype --- --- 108.138633728027 50.1071243286133 91.4395370483398 127.713485717773 0.014160200022161 0.0239257998764515 0.0239257998764515 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR164W /GEN=MMS1 /DB_XREF=GI:6325422 /SEG=NC_001148:+870697,874920 /DEF=sensitive to methyl methanesulfonate (MMS), diepoxybutane, and mitomycin C /NOTE=Mms1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA repair [goid GO:0006281] [evidence IGI,IMP] [pmid 11810260]; go_process: negative regulation of DNA transposition [goid GO:0000335] [evidence IMP] [pmid 11779788] --- --- --- --- --- --- S0006368 // MMS1 SGDID:S0006368, Chr XVI from 870699-874922, Verified ORF // sgd // 11 // --- /// GENSCAN00000017311 // cdna:Genscan chromosome:SGD1:XVI:870699:874922:1 // ensembl // 11 // --- /// YPR164W // cdna:known chromosome:SGD1:XVI:870699:874922:1 gene:YPR164W // ensembl // 11 // --- --- No cerevisiae_gene 1.18365907534436 -2.15814886958651 1.37049136701301 -1.18262446660091 1.18101626879231 Max fold change below threshold 4 2.15814886958651 Max fold change at or above threshold 0.417709106020562 -1.34024273871226 -0.0881575880779512 1.01069122076965 94.3496952056885 33.0108640764468 0.349877803044101 PPPPPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1773641_x_at YAL068C.S1 Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth /// Hypothetical protein /// Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 2.15813275652379 99.6961326599121 55.5574321746826 PAU4 /// PAU6 /// PAU1 /// PAU2 /// DAN3 --- 9277 // cell wall (sensu Fungi) // inferred from sequence similarity --- 47.2993469238281 97.3139953613281 102.078269958496 63.8155174255371 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL068C /DB_XREF=GI:6319249 /SEG=NC_001133:-1807,2169 /DEF=Hypothetical ORF /NOTE=Yal068cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002142 // YAL068C SGDID:S0002142, Chr I from 2169-1807, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018205 // cdna:GeneFinder chromosome:SGD1:I:1807:2169:-1 // ensembl // 11 // --- /// GENSCAN00000020319 // cdna:Genscan chromosome:SGD1:I:1807:2169:-1 // ensembl // 11 // --- /// YAL068C // cdna:known chromosome:SGD1:I:1807:2169:-1 gene:YAL068C // ensembl // 11 // --- S0007592 // sgd // 1 // Cross Hyb Matching Probes /// S0002950 // sgd // 2 // Cross Hyb Matching Probes /// S0003230 // sgd // 2 // Cross Hyb Matching Probes /// S0003526 // sgd // 1 // Cross Hyb Matching Probes /// S0001038 // sgd // 2 // Cross Hyb Matching Probes /// S0001438 // sgd // 3 // Cross Hyb Matching Probes /// S0003759 // sgd // 3 // Cross Hyb Matching Probes /// S0003987 // sgd // 2 // Cross Hyb Matching Probes /// S0004453 // sgd // 1 // Cross Hyb Matching Probes /// S0005359 // sgd // 2 // Cross Hyb Matching Probes /// S0005521 // sgd // 2 // Cross Hyb Matching Probes /// GENEFINDER00000022249 // ensembl // 3 // Cross Hyb Matching Probes /// GENEFINDER00000023792 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000025521 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000016343 // ensembl // 3 // Cross Hyb Matching Probes /// GENEFINDER00000019046 // ensembl // 3 // Cross Hyb Matching Probes /// GENSCAN00000019154 // ensembl // 2 // Cross Hyb Matching Probes /// GENEFINDER00000021409 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000019567 // ensembl // 1 // Cross Hyb Matching Probes /// GENEFINDER00000021587 // ensembl // 1 // Cross Hyb Matching Probes /// GENSCAN00000016515 // ensembl // 2 // Cross Hyb Matching Probes /// GENEFINDER00000020211 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000023970 // ensembl // 3 // Cross Hyb Matching Probes /// GENEFINDER00000024482 // ensembl // 3 // Cross Hyb Matching Probes /// GENSCAN00000017642 // ensembl // 2 // Cross Hyb Matching Probes /// GENEFINDER00000024911 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000018169 // ensembl // 1 // Cross Hyb Matching Probes /// GENEFINDER00000024597 // ensembl // 1 // Cross Hyb Matching Probes /// GENSCAN00000020101 // ensembl // 2 // Cross Hyb Matching Probes /// GENEFINDER00000020637 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000017342 // ensembl // 2 // Cross Hyb Matching Probes /// GENEFINDER00000022652 // ensembl // 2 // Cross Hyb Matching Probes /// YBL108C-A // ensembl // 1 // Cross Hyb Matching Probes /// YDR542W // ensembl // 2 // Cross Hyb Matching Probes /// YIL176C // ensembl // 3 // Cross Hyb Matching Probes /// YGL261C // ensembl // 2 // Cross Hyb Matching Probes /// YGR294W // ensembl // 1 // Cross Hyb Matching Probes /// YHL046C // ensembl // 2 // Cross Hyb Matching Probes /// YJL223C // ensembl // 3 // Cross Hyb Matching Probes /// YLL064C // ensembl // 2 // Cross Hyb Matching Probes /// YLR461W // ensembl // 1 // Cross Hyb Matching Probes /// YNR076W // ensembl // 2 // Cross Hyb Matching Probes /// YOL161C // ensembl // 2 // Cross Hyb Matching Probes No cerevisiae_gene 1.81260786951458 2.05740674428433 -1.02265703572607 2.15813275652379 1.34918390159397 Max fold change below threshold 4 2.15813275652379 Max fold change at or above threshold -1.14737187577185 0.744822438058655 0.92506829770023 -0.522518859987039 77.6267824172974 26.4320889624976 0.340502184161221 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769645_at YMR069W.S1 N alpha-acetyl-transferase, involved in acetylation of the N-terminal residues of histones H4 and H2A 2.15810519326126 168.228309631348 121.242984771729 NAT4 6473 // protein amino acid acetylation // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4596 // peptide alpha-N-acetyltransferase activity // inferred from direct assay 111.35913848877 195.865859985352 140.590759277344 131.126831054688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR069W /GEN=NAT4 /DB_XREF=GI:6323714 /SEG=NC_001145:+407708,408565 /DEF=Hypothetical ORF /NOTE=Nat4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004673 // NAT4 SGDID:S0004673, Chr XIII from 407708-408565, Verified ORF // sgd // 11 // --- /// GENSCAN00000018771 // cdna:Genscan chromosome:SGD1:XIII:407792:408565:1 // ensembl // 11 // --- /// GENEFINDER00000022005 // cdna:GeneFinder chromosome:SGD1:XIII:407792:408724:1 // ensembl // 9 // --- /// YMR069W // cdna:known chromosome:SGD1:XIII:407708:408565:1 gene:YMR069W // ensembl // 11 // --- --- No cerevisiae_gene 2.03157083775661 1.75886651642069 -2.15810519326126 1.2624986254857 1.17751298038204 Max fold change below threshold 4 2.15810519326126 Max fold change at or above threshold -0.922079238023425 1.41255360317654 -0.114509133706111 -0.375965231447001 144.735647201538 36.1970070861965 0.250090477267108 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770541_at YGR272C.S1 Hypothetical protein 2.15734846390647 70.6437511444092 103.331756591797 --- 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 81.0866851806641 63.9819297790527 77.3055725097656 125.57682800293 0.000732421991415322 0.000244141003349796 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR272C /GEN=SLH1 /DB_XREF=GI:6321711 /SEG=NC_001139:-1038047,1038505 /DEF=Hypothetical ORF /NOTE=Ygr272cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP] [pmid 12837249] --- --- --- --- --- --- S0003504 // YGR272C SGDID:S0003504, Chr VII from 1038506-1038048, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YGR272C // cdna:known chromosome:SGD1:VII:1038048:1038506:-1 gene:YGR272C // ensembl // 11 // --- --- No cerevisiae_gene 2.15734846390647 -1.26733728508469 1.05652117377609 -1.04891125630589 1.5486738386597 Max fold change below threshold 4 2.15734846390647 Max fold change at or above threshold -0.220587118029672 -0.859977862061396 -0.361928422663925 1.44249340275499 86.987753868103 26.7516468783331 0.307533482458874 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780232_at YMR111C.S1 Hypothetical protein 2.15646120177956 239.721054077148 570.001190185547 --- --- 5634 // nucleus // inferred from direct assay --- 504.242858886719 233.828857421875 245.613250732422 635.759521484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR111C /GEN=MYO5 /DB_XREF=GI:6323758 /SEG=NC_001145:-492403,493791 /DEF=Hypothetical ORF /NOTE=Ymr111cp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004717 // YMR111C SGDID:S0004717, Chr XIII from 493791-492403, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000018805 // cdna:Genscan chromosome:SGD1:XIII:492403:493791:-1 // ensembl // 10 // --- /// GENEFINDER00000021869 // cdna:GeneFinder chromosome:SGD1:XIII:492403:493791:-1 // ensembl // 10 // --- /// YMR111C // cdna:known chromosome:SGD1:XIII:492403:493791:-1 gene:YMR111C // ensembl // 10 // --- --- No cerevisiae_gene -1.96501768251066 -2.15646120177956 1.04309960098118 -2.05299533874113 1.2608200796101 Max fold change below threshold 4 2.15646120177956 Max fold change at or above threshold 0.501521492536691 -0.863099795490234 -0.803630855675943 1.16520915862949 404.861122131348 198.160474145782 0.4894529588383 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774554_at YGL018C.S1 Molecular chaperone involved, with partner Ssq1p, in assembly of Fe/S clusters and in mitochondrial iron metabolism; contains a J domain typical to J-type chaperones; localizes to the mitochondrial matrix 2.15640234514441 177.5654296875 247.709373474121 JAC1 9060 // aerobic respiration // inferred from mutant phenotype /// 16226 // iron-sulfur cluster assembly // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 51087 // chaperone binding // inferred from sequence similarity /// 51087 // chaperone binding // inferred from mutant phenotype 206.588027954102 123.62939453125 231.50146484375 288.830718994141 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL018C /GEN=JAC1 /DB_XREF=GI:6321420 /SEG=NC_001139:-459113,459667 /DEF=Molecular chaperone involved, with partner Ssq1p, in assembly of Fe/S clusters and in mitochondrial iron metabolism; contains a J domain typical to J-type chaperones; localizes to the mitochondrial matrix /NOTE=Jac1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11278728]; go_function: co-chaperone activity [goid GO:0003767] [evidence IGI,ISS] [pmid 11278728]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 9813017]; go_process: iron-sulfur cluster assembly [goid GO:0016226] [evidence IMP] [pmid 11278728] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 9.99999997475243E-7 --- S0002986 // JAC1 SGDID:S0002986, Chr VII from 459669-459115, reverse complement, Verified ORF // sgd // 11 // --- /// YGL018C // cdna:known chromosome:SGD1:VII:459115:459669:-1 gene:YGL018C // ensembl // 11 // --- GENSCAN00000019327 // ensembl // 8 // Cross Hyb Matching Probes /// GENEFINDER00000021664 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 1.24800049161852 -1.67102677107977 2.15640234514441 1.12059477568169 1.39809998601812 Max fold change below threshold 4 2.15640234514441 Max fold change at or above threshold -0.0881757484913725 -1.29738186589577 0.274962830937456 1.11059478344969 212.637401580811 68.6058664679311 0.322642517063764 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773732_at YGR184C.S1 Ubiquitin-protein ligase (E3) that interacts with Rad6p/Ubc2p to ubiquitinate substrates of the N-end rule pathway; binds to the Rpn2p, Rpt1p, and Rpt6p proteins of the 19S particle of the 26S proteasome 2.15576920477996 901.69287109375 1786.95977783203 UBR1 209 // protein polyubiquitination // traceable author statement /// 6513 // protein monoubiquitination // traceable author statement 502 // proteasome complex (sensu Eukaryota) // inferred from physical interaction 4842 // ubiquitin-protein ligase activity // traceable author statement 1830.38647460938 849.064208984375 954.321533203125 1743.53308105469 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR184C /GEN=UBR1 /DB_XREF=GI:6321623 /SEG=NC_001139:-859904,865756 /DEF=Ubiquitin-protein ligase (E3) that interacts with Rad6p/Ubc2p to ubiquitinate substrates of the N-end rule pathway; binds to the Rpn2p, Rpt1p, and Rpt6p proteins of the 19S particle of the 26S proteasome /NOTE=Ubr1p; go_component: proteasome complex (sensu Eukarya) [goid GO:0000502] [evidence IPI] [pmid 10848595]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 8982460]; go_process: protein monoubiquitination [goid GO:0006513] [evidence TAS] [pmid 8982460]; go_process: protein polyubiquitination [goid GO:0000209] [evidence TAS] [pmid 8982460] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 3.09999990463257 --- S0003416 // UBR1 SGDID:S0003416, Chr VII from 865758-859906, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019484 // cdna:Genscan chromosome:SGD1:VII:859906:865758:-1 // ensembl // 11 // --- /// GENEFINDER00000021734 // cdna:GeneFinder chromosome:SGD1:VII:859906:865758:-1 // ensembl // 10 // --- /// YGR184C // cdna:known chromosome:SGD1:VII:859906:865758:-1 gene:YGR184C // ensembl // 11 // --- --- No cerevisiae_gene -2.14907190696568 -2.15576920477996 -1.19743533904303 -1.91799766737505 -1.04981459457147 Max fold change below threshold 4 2.15576920477996 Max fold change at or above threshold 0.945391383089092 -0.963289288790198 -0.758562842292924 0.776460747994029 1344.32632446289 514.13642946297 0.382449127200114 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771853_at YGL041C-B.S1 Identified by fungal homology and RT-PCR 2.15537909777206 137.194625854492 271.051422119141 --- --- --- --- 283.386932373047 142.91032409668 131.478927612305 258.715911865234 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL041C-B /GEN=DST1 /DB_XREF=GI:33438792 /SEG=NC_001139:-418707,418889 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ygl041c-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028548 // span:13-35 // numtm:1 S0028548 // YGL041C-B SGDID:S0028548, Chr VII from 418891-418709, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YGL041C-B // cdna:known chromosome:SGD1:VII:418709:418891:-1 gene:YGL041C-B // ensembl // 11 // --- --- No cerevisiae_gene 1.12354783097134 -1.98297032887095 -1.76612819479931 -2.15537909777206 -1.09535950197243 Max fold change below threshold 4 2.15537909777206 Max fold change at or above threshold 1.0152224139097 -0.784020195441063 -0.930435003510786 0.699232785042145 204.123023986816 78.0754121463677 0.382491943443922 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779393_at YMR026C.S1 RING-finger peroxisomal membrane peroxin that plays an essential role in peroxisome biogenesis and peroxisomal matrix protein import, forms translocation subcomplex with Pex2p and Pex10p 2.15537449532059 648.261047363281 1310.86480712891 PEX12 7031 // peroxisome organization and biogenesis // traceable author statement /// 16558 // peroxisome matrix protein import // inferred from mutant phenotype 5778 // peroxisomal membrane // traceable author statement 5515 // protein binding // traceable author statement 1331.06701660156 617.557189941406 678.964904785156 1290.66259765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR026C /GEN=PEX12 /DB_XREF=GI:6323668 /SEG=NC_001145:-324235,325434 /DEF=Pex2p, Pex10p, and Pex12p together make up the RING finger complex of the peroxisomal import machinery. /NOTE=Pex12p; go_component: peroxisomal membrane [goid GO:0005778] [evidence TAS]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 12667447]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence TAS] --- --- --- --- --- S0004628 // span:266-288 // numtm:1 S0004628 // PEX12 SGDID:S0004628, Chr XIII from 325434-324235, reverse complement, Verified ORF // sgd // 11 // --- /// YMR026C // cdna:known chromosome:SGD1:XIII:324235:325434:-1 gene:YMR026C // ensembl // 11 // --- --- No cerevisiae_gene -1.92271206392782 -2.15537449532059 -1.0074298184823 -1.96043566791239 -1.0313051753562 Max fold change below threshold 4 2.15537449532059 Max fold change at or above threshold 0.916020017943977 -0.94338732328749 -0.783358755323419 0.810726060666933 979.562927246094 383.72970292115 0.391735632543744 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775857_at SPACUNK4.06c.S1 --- 2.15490457058054 --- --- --- --- 4.96786642074585 6.90934371948242 4.06730461120605 6.69015836715698 0.303710997104645 0.194580003619194 0.219482004642487 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPACUNK4.06c /GEN=rpb7 /DEF=DNA-directed RNA polymerase (II subunit) (PMID 9322754) --- --- --- --- --- --- D86554 // Schizosaccharomyces pombe rpb7 mRNA for RNA polymerase II subunit Rpb7, complete cds. // gb // 11 // --- /// AF027821 // Schizosaccharomyces pombe RNA polymerase II subunit Rpb7 (rpb7+) mRNA, complete cds. // gb // 11 // --- /// SPACUNK4.06c // |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase II |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.15490457058054 1.39080706571114 2.12034376583441 -1.22141489158658 1.34668644455069 Max fold change below threshold 4 2.15490457058054 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1771363_at YGR213C.S1 Protein involved in 7-aminocholesterol resistance; has seven potential membrane-spanning regions 2.15465087863816 57.415111541748 99.0796813964844 RTA1 --- 16021 // integral to membrane // inferred from sequence similarity --- 94.3115768432617 43.7711639404297 71.0590591430664 103.847785949707 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR213C /GEN=RTA1 /DB_XREF=GI:6321652 /SEG=NC_001139:-918515,919468 /DEF=involved in 7-aminocholesterol resistance /NOTE=Rta1p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 12524434]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003445 // span:15-37,63-85,100-122,143-160,175-197,218-240,255-277 // numtm:7 S0003445 // RTA1 SGDID:S0003445, Chr VII from 919470-918517, reverse complement, Verified ORF // sgd // 11 // --- /// YGR213C // cdna:known chromosome:SGD1:VII:918517:919470:-1 gene:YGR213C // ensembl // 11 // --- --- No cerevisiae_gene -1.47483581311559 -2.15465087863816 1.01188300194303 -1.32722805481255 1.10111387621367 Max fold change below threshold 4 2.15465087863816 Max fold change at or above threshold 0.599548767678708 -1.28672501461987 -0.268283764569051 0.955460011510213 78.2473964691162 26.7937843260719 0.342423972363697 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769671_at YPR117W.S1 Hypothetical protein 2.15392750787544 690.189910888672 746.272430419922 --- --- --- --- 656.454895019531 759.237915039063 621.141906738281 836.089965820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR117W /GEN=PIS1 /DB_XREF=GI:6325374 /SEG=NC_001148:+760021,767490 /DEF=Hypothetical ORF /NOTE=Ypr117wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0006321 // span:15-37,128-150 // numtm:2 S0006321 // YPR117W SGDID:S0006321, Chr XVI from 760023-767492, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017271 // cdna:Genscan chromosome:SGD1:XVI:760137:767492:1 // ensembl // 11 // --- /// GENEFINDER00000020854 // cdna:GeneFinder chromosome:SGD1:XVI:763344:767492:1 // ensembl // 11 // --- /// YPR117W // cdna:known chromosome:SGD1:XVI:760023:767492:1 gene:YPR117W // ensembl // 11 // --- --- No cerevisiae_gene -2.15392750787544 1.15657285945971 1.53140272331267 -1.05685172405559 1.27364419423735 Max fold change below threshold 4 2.15392750787544 Max fold change at or above threshold -0.630338633746204 0.418415240547886 -0.990657227866373 1.20258062106469 718.231170654297 98.0049013775648 0.136453144032003 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776251_at YFR032C-B.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 2.15317577898351 63.2444152832031 36.8070297241211 --- --- --- --- 41.3341484069824 66.7133636474609 59.7754669189453 32.2799110412598 0.00122069998178631 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR032C-B /GEN=RPL29 /DB_XREF=GI:33438790 /SEG=NC_001138:-223698,223961 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Yfr032c-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028630 // span:20-42 // numtm:1 S0028630 // YFR032C-B SGDID:S0028630, Chr VI from 223961-223698, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YFR032C-B // cdna:known chromosome:SGD1:VI:223698:223961:-1 gene:YFR032C-B // ensembl // 11 // --- --- No cerevisiae_gene 2.15317577898351 1.61400116413651 -1.38166181205241 1.44615213383343 -1.28049139770397 Max fold change below threshold 4 2.15317577898351 Max fold change at or above threshold -0.544646367043494 1.04570967495608 0.610955255782166 -1.11201856369475 50.0257225036621 15.95819713966 0.318999833305592 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770628_at YLR018C.S1 Integral membrane protein of the nuclear pore complex, localizes adjacent to the nuclear membrane 2.15302669543923 492.546340942383 1020.1943359375 POM34 6913 // nucleocytoplasmic transport // inferred from physical interaction 5643 // nuclear pore // traceable author statement /// 5643 // nuclear pore // inferred from direct assay --- 1016.20422363281 513.10400390625 471.988677978516 1024.18444824219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR018C /GEN=POM34 /DB_XREF=GI:6323046 /SEG=NC_001144:-178706,179605 /DEF=nuclear pore integral membrane protein /NOTE=Pom34p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 10684247]; go_component: nuclear pore [goid GO:0005643] [evidence TAS] [pmid 11343909]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: nucleocytoplasmic transport [goid GO:0006913] [evidence IPI] [pmid 10684247] --- --- --- --- --- --- S0004008 // POM34 SGDID:S0004008, Chr XII from 179605-178706, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017791 // cdna:Genscan chromosome:SGD1:XII:178706:179605:-1 // ensembl // 11 // --- /// YLR018C // cdna:known chromosome:SGD1:XII:178706:179605:-1 gene:YLR018C // ensembl // 11 // --- GENEFINDER00000024866 // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene -1.03812116386113 -1.98050339871931 -1.05453212839794 -2.15302669543923 1.00785297327426 Max fold change below threshold 4 2.15302669543923 Max fold change at or above threshold 0.851587196045026 -0.797288219602011 -0.932040794676224 0.877741818233209 756.370338439941 305.1171816575 0.403396545516079 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769605_at SPAC8E11.02c.S1 --- 2.15253895699843 --- --- --- --- 13.5064010620117 10.9804067611694 20.5242309570313 6.27463722229004 0.018554700538516 0.0107421996071935 0.00415039015933871 0.0461426004767418 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8E11.02c /GEN=rad24 /DEF=involved in DNA repair --- --- --- --- --- --- AB010899 // Schizosaccharomyces pombe mRNA for Rad24, complete cds. // gb // 11 // --- /// SPAC8E11.02c // |rad24||14-3-3 protein Rad24|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.98256544816306 -1.23004560357227 -1.43389923929619 1.51959288509194 -2.15253895699843 Max fold change below threshold 4 2.15253895699843 Max fold change at or above threshold PAPPPP No 3 0 PPPP 0 4 0 No No 3 < x
1774699_at YDL214C.S1 Protein kinase with a possible role in MAP kinase signaling in the pheromone response pathway 2.15245346456611 3806.59777832031 2033.04400634766 PRR2 165 // MAPKKK cascade // inferred from mutant phenotype 5634 // nucleus // inferred from sequence similarity 4702 // receptor signaling protein serine/threonine kinase activity // inferred from mutant phenotype /// 4702 // receptor signaling protein serine/threonine kinase activity // inferred from sequence similarity 2099.97802734375 4520.10498046875 3093.09057617188 1966.10998535156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL214C /GEN=PRR2 /DB_XREF=GI:6319987 /SEG=NC_001136:-74447,76546 /DEF=Protein kinase with a possible role in MAP kinase signaling in the pheromone response pathway /NOTE=Prr2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: receptor signaling protein serine/threonine kinase activity [goid GO:0004702] [evidence IMP,ISS] [pmid 11337509]; go_process: MAPKKK cascade [goid GO:0000165] [evidence IMP] [pmid 11337509] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 5.0E-60 /// hanks // 3.1.6 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk5 // 3.0E-64 scop // a.4.1.Myb // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb // 2.59999990463257 --- S0002373 // PRR2 SGDID:S0002373, Chr IV from 76546-74447, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023923 // cdna:GeneFinder chromosome:SGD1:IV:74447:76411:-1 // ensembl // 11 // --- /// GENSCAN00000024943 // cdna:Genscan chromosome:SGD1:IV:74447:76546:-1 // ensembl // 11 // --- /// YDL214C // cdna:known chromosome:SGD1:IV:74447:76546:-1 gene:YDL214C // ensembl // 11 // --- --- No cerevisiae_gene 1.00169726013223 2.15245346456611 -1.12510457711604 1.47291568573425 -1.06808776873602 Max fold change below threshold 4 2.15245346456611 Max fold change at or above threshold -0.695161762141767 1.35691405529088 0.146918957139341 -0.808671250288456 2919.82089233398 1179.35552505697 0.403913653797526 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772410_at YAL031C.S1 Cytoplasmic Glc7p-interacting protein, potential Cdc28p substrate 2.15231466934941 609.515502929688 1253.08837890625 --- --- 5737 // cytoplasm // inferred from direct assay --- 1191.1455078125 553.425354003906 665.605651855469 1315.03125 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL031C /GEN=FUN21 /DB_XREF=GI:6319288 /SEG=NC_001133:-84752,87034 /DEF=Cytoplasmic protein of unknown function, potential Cdc28p substrate /NOTE=Fun21p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000029 // FUN21 SGDID:S0000029, Chr I from 87032-84750, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018198 // cdna:GeneFinder chromosome:SGD1:I:84750:85307:-1 // ensembl // 9 // --- /// GENSCAN00000020352 // cdna:Genscan chromosome:SGD1:I:84750:87032:-1 // ensembl // 11 // --- /// YAL031C // cdna:known chromosome:SGD1:I:84750:87032:-1 gene:YAL031C // ensembl // 11 // --- YAL031W-A // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene -1.77690369941829 -2.15231466934941 1.44746780647896 -1.78956639639705 1.10400554875534 Max fold change below threshold 4 2.15231466934941 Max fold change at or above threshold 0.687818036302011 -1.0002569433679 -0.703310464753116 1.01574937181901 931.301940917969 377.779518972134 0.405646656979758 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769564_at YDR207C.S1 Key transcriptional regulator of early meiotic genes, binds URS1 upstream regulatory sequence, couples metabolic responses to nutritional cues with initiation and progression of meiosis, forms complex with Ime1p, and also with Sin3p-Rpd3p 2.15224113776072 416.849533081055 1026.49551391602 UME6 7001 // chromosome organization and biogenesis (sensu Eukaryota) // inferred from mutant phenotype /// 7068 // negative regulation of transcription, mitotic // inferred from mutant phenotype /// 7131 // meiotic recombination // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype /// 45836 // positive regulation of meiosis // inferred from mutant phenotype 5634 // nucleus // inferred from physical interaction 3677 // DNA binding // inferred from direct assay /// 30528 // transcription regulator activity // inferred from mutant phenotype /// 30528 // transcription regulator activity // inferred from direct assay 853.018981933594 437.359191894531 396.339874267578 1199.97204589844 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR207C /GEN=UME6 /DB_XREF=GI:6320413 /SEG=NC_001136:-865005,867515 /DEF=Regulator of both repression and induction of early meiotic genes. Ume6p requires Ume4 for mitotic repression and interacts with and requires Ime1p and Rim11p for induction of meiosis-specific transcription /NOTE=Ume6p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 8628320]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 7926768]; go_function: transcription regulator activity [goid GO:0030528] [evidence IDA,IMP] [pmid 9150136]; go_process: entry into meiosis [goid GO:0042061] [evidence IMP] [pmid 8618927]; go_process: negative regulation of transcription, mitotic [goid GO:0007068] [evidence IMP] [pmid 7926768] --- --- --- --- --- --- S0002615 // UME6 SGDID:S0002615, Chr IV from 867517-865007, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023665 // cdna:GeneFinder chromosome:SGD1:IV:864935:867517:-1 // ensembl // 11 // --- /// GENSCAN00000025255 // cdna:Genscan chromosome:SGD1:IV:864935:867517:-1 // ensembl // 11 // --- /// YDR207C // cdna:known chromosome:SGD1:IV:865007:867517:-1 gene:YDR207C // ensembl // 11 // --- --- No cerevisiae_gene 1.01764713921423 -1.9503853988721 -1.63858879260405 -2.15224113776072 1.40673545526312 Max fold change below threshold 4 2.15224113776072 Max fold change at or above threshold 0.345849129489454 -0.748627099725784 -0.856635305371826 1.25941327560816 721.672523498535 379.779641570744 0.52624927401925 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769732_at YOL077W-A.S1 Subunit k of the mitochondrial F1F0 ATP synthase, which is a large enzyme complex required for ATP synthesis; associated only with the dimeric form of ATP synthase 2.15171935355215 1353.44226074219 684.197692871094 ATP19 15986 // ATP synthesis coupled proton transport // inferred from mutant phenotype /// 15986 // ATP synthesis coupled proton transport // inferred from physical interaction 276 // proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota) // inferred from mutant phenotype /// 276 // proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota) // inferred from physical interaction 46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // inferred from physical interaction 664.78076171875 1430.42163085938 1276.462890625 703.614624023438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL077W-A /GEN=ATP19 /DB_XREF=GI:6324495 /SEG=NC_001147:+185437,185643 /DEF=Subunit k of the mitochondrial F1F0 ATP synthase, which is a large enzyme complex required for ATP synthesis; associated only with the dimeric form of ATP synthase /NOTE=Atp19p; go_component: proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukarya) [goid GO:0000276] [evidence IMP,IPI] [pmid 9857174]; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism [goid GO:0046933] [evidence IPI] [pmid 9857174]; go_process: ATP synthesis coupled proton transport [goid GO:0015986] [evidence IMP,IPI] [pmid 9857174] --- --- --- --- --- --- S0007339 // ATP19 SGDID:S0007339, Chr XV from 185437-185643, Verified ORF // sgd // 11 // --- /// YOL077W-A // cdna:known chromosome:SGD1:XV:185437:185643:1 gene:YOL077W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.36116694933269 2.15171935355215 1.94427626442282 1.92012609890332 1.05841604411699 Max fold change below threshold 4 2.15171935355215 Max fold change at or above threshold -0.90364951826501 1.05057185913572 0.657607646369221 -0.804529987239926 1018.81997680664 391.788196565012 0.38455095648303 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769425_at SPAC19E9.02.S1 --- 2.15151148339836 --- --- --- --- 0.796151399612427 1.52471482753754 0.899737894535065 0.370042830705643 0.962401986122131 0.904784977436066 0.919434010982513 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19E9.02 /GEN=fin1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPAC19E9.02 // |fin1||serine/threonine protein kinase Fin1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.75420101546949 1.91510663459209 -1.26615805623772 1.13010904078428 -2.15151148339836 Max fold change below threshold 0 2.15151148339836 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770344_at YMR149W.S1 Delta subunit of the oligosaccharyl transferase glycoprotein complex, which is required for N-linked glycosylation of proteins in the endoplasmic reticulum 2.15131666911323 1474.82495117188 2705.03125 SWP1 6487 // N-linked glycosylation // inferred from physical interaction 8250 // oligosaccharyl transferase complex // inferred from physical interaction 4579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from physical interaction 2889.20751953125 1606.65490722656 1342.99499511719 2520.85498046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR149W /GEN=SWP1 /DB_XREF=GI:6323798 /SEG=NC_001145:+560995,561855 /DEF=oligosaccharyl transferase glycoprotein complex, delta subunit /NOTE=Swp1p; go_component: oligosaccharyl transferase complex [goid GO:0008250] [evidence IPI] [pmid 10358084]; go_function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity [goid GO:0004579] [evidence IPI] [pmid 9405463]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IPI] [pmid 9405463] --- --- --- --- --- S0004757 // span:196-218,231-253 // numtm:2 S0004757 // SWP1 SGDID:S0004757, Chr XIII from 560995-561855, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021876 // cdna:GeneFinder chromosome:SGD1:XIII:560995:561855:1 // ensembl // 11 // --- /// GENSCAN00000018838 // cdna:Genscan chromosome:SGD1:XIII:561109:561855:1 // ensembl // 11 // --- /// YMR149W // cdna:known chromosome:SGD1:XIII:560995:561855:1 gene:YMR149W // ensembl // 11 // --- --- No cerevisiae_gene -1.07044389496977 -1.79827510346864 -1.43986190011326 -2.15131666911323 -1.14612206648794 Max fold change below threshold 4 2.15131666911323 Max fold change at or above threshold 1.08902426601623 -0.65846338865823 -1.01770201717402 0.587141139816027 2089.92810058594 733.940871555752 0.351179962291517 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776860_at YDL010W.S1 Hypothetical protein 2.15065297011663 399.510025024414 497.463134765625 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 492.925842285156 413.718627929688 385.301422119141 502.000427246094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL010W /GEN=HEX3 /DB_XREF=GI:6320193 /SEG=NC_001136:+432327,433022 /DEF=Hypothetical ORF /NOTE=Ydl010wp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002168 // span:12-34 // numtm:1 S0002168 // YDL010W SGDID:S0002168, Chr IV from 432327-433022, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023709 // cdna:GeneFinder chromosome:SGD1:IV:432477:433022:1 // ensembl // 11 // --- /// GENSCAN00000025091 // cdna:Genscan chromosome:SGD1:IV:432477:433022:1 // ensembl // 11 // --- /// YDL010W // cdna:known chromosome:SGD1:IV:432327:433022:1 gene:YDL010W // ensembl // 11 // --- YDL011C // ensembl // 4 // Negative Strand Matching Probes /// YDL009C // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene 2.15065297011663 -1.19145189268328 -1.0887560794386 -1.27932526065979 1.01840963524831 Max fold change below threshold 4 2.15065297011663 Max fold change at or above threshold 0.768185174983062 -0.601005143375628 -1.09223013326092 0.925050101653484 448.48657989502 57.8496745802424 0.128988641296209 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771031_at YGL178W.S1 Protein that specifically binds to mRNAs encoding chromatin modifiers and spindle pole body components; has roles in longevity, in maintenance of cell wall integrity, and in sensitivity to and recovery from pheromone arrest 2.15016025779523 3087.30383300781 3553.38684082031 MPT5 288 // mRNA catabolism, deadenylylation-dependent decay // inferred from genetic interaction /// 321 // re-entry into mitotic cell cycle after pheromone arrest // inferred from mutant phenotype /// 1302 // replicative cell aging // inferred from mutant phenotype /// 1308 // loss of chromatin silencing during replicative cell aging // inferred from genetic interaction /// 1308 // loss of chromatin silencing during replicative cell aging // inferred from expression pattern /// 1308 // loss of chromatin silencing during replicative cell aging // inferred from mutant phenotype /// 6605 // protein targeting // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 3729 // mRNA binding // inferred from direct assay 3735.58349609375 3553.38061523438 2621.22705078125 3371.19018554688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL178W /GEN=MPT5 /DB_XREF=GI:6321260 /SEG=NC_001139:+167356,170575 /DEF=Product of gene unknown /NOTE=Mpt5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: mRNA binding [goid GO:0003729] [evidence IDA] [pmid 11157761]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 11805047]; go_process: loss of chromatin silencing during replicative cell aging [goid GO:0001308] [evidence IEP,IGI,IMP] [pmid 9150138]; go_process: mRNA catabolism, deadenylation-dependent [goid GO:0000288] [evidence IGI] [pmid 11101532]; go_process: protein targeting [goid GO:0006605] [evidence IMP] [pmid 9150138]; go_process: re-entry into mitotic cell cycle after pheromone arrest [goid GO:0000321] [evidence IMP] [pmid 9154842] --- --- --- --- --- --- S0003146 // MPT5 SGDID:S0003146, Chr VII from 167358-167360,168001-170577, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021580 // cdna:GeneFinder chromosome:SGD1:VII:168388:170577:1 // ensembl // 11 // --- /// GENSCAN00000019215 // cdna:Genscan chromosome:SGD1:VII:170086:170577:1 // ensembl // 10 // --- /// YGL178W // cdna:known chromosome:SGD1:VII:167358:170577:1 gene:YGL178W // ensembl // 11 // --- --- No cerevisiae_gene -2.15016025779523 -1.0512759258263 -1.44800457957432 -1.42512778318092 -1.10809040442427 Max fold change below threshold 4 2.15016025779523 Max fold change at or above threshold 0.848733893391484 0.476316867065146 -1.42897605100382 0.103925290547186 3320.34533691406 489.24422886003 0.147347392881348 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779302_at YIR001C.S1 Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM); may have a role in mRNA translation, as suggested by genetic interactions with genes encoding proteins involved in translational initiation 2.14972720735342 411.80891418457 261.38468170166 SGN1 16071 // mRNA metabolism // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay 8143 // poly(A) binding // inferred from direct assay 232.750350952148 323.26806640625 500.349761962891 290.019012451172 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR001C /GEN=SGN1 /DB_XREF=GI:6322191 /SEG=NC_001141:-356140,356892 /DEF=Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM); may have a role in mRNA translation, as suggested by genetic interactions with genes encoding proteins involved in translational initiation /NOTE=Sgn1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10764794]; go_function: poly(A) binding [goid GO:0008143] [evidence IDA] [pmid 10764794]; go_process: mRNA metabolism [goid GO:0016071] [evidence IGI] [pmid 10764794] --- --- --- --- --- --- S0001440 // SGN1 SGDID:S0001440, Chr IX from 356892-356140, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016476 // cdna:Genscan chromosome:SGD1:IX:356140:356892:-1 // ensembl // 11 // --- /// GENEFINDER00000019096 // cdna:GeneFinder chromosome:SGD1:IX:356140:356892:-1 // ensembl // 11 // --- /// YIR001C // cdna:known chromosome:SGD1:IX:356140:356892:-1 gene:YIR001C // ensembl // 11 // --- --- No cerevisiae_gene 1.1125408569441 1.38890474314563 1.39161834505554 2.14972720735342 1.24605188032905 Max fold change below threshold 4 2.14972720735342 Max fold change at or above threshold -0.899941317273069 -0.115507815283358 1.41909581326499 -0.403646680708567 336.596797943115 115.392465039425 0.342821042103099 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775215_at YJL213W.S1 Hypothetical protein 2.14958016159654 79.5718860626221 60.832067489624 --- --- --- --- 52.6453666687012 105.366355895996 53.777416229248 69.0187683105469 0.000732421991415322 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL213W /GEN=HXT8 /DB_XREF=GI:6322248 /SEG=NC_001142:+32163,33158 /DEF=Hypothetical ORF /NOTE=Yjl213wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003749 // YJL213W SGDID:S0003749, Chr X from 32163-33158, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000023978 // cdna:Genscan chromosome:SGD1:X:32169:33158:1 // ensembl // 11 // --- /// GENEFINDER00000024388 // cdna:GeneFinder chromosome:SGD1:X:32169:33158:1 // ensembl // 11 // --- /// YJL213W // cdna:known chromosome:SGD1:X:32163:33158:1 gene:YJL213W // ensembl // 11 // --- --- No cerevisiae_gene 1.51951931018986 2.0014364523106 2.14958016159654 1.02150330849951 1.31101315610325 Max fold change below threshold 4 2.14958016159654 Max fold change at or above threshold -0.713594061723674 1.42926749358827 -0.667581543416302 -0.0480918884482947 70.201976776123 24.6030776447525 0.350461322808797 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775936_at SPBC1539.06.S1 --- 2.14908382189161 --- --- --- --- 1.54306983947754 1.92165052890778 3.31618642807007 1.18078458309174 0.943848013877869 0.904784977436066 0.828612983226776 0.822998046875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1539.06 /DEF=acyl-coenzyme A binding protein (predicted) --- --- --- --- --- --- SPBC1539.06 // |||acyl-coenzyme A binding protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.78845441625014 1.24534255011971 1.42376590363814 2.14908382189161 -1.30681740054329 Max fold change below threshold 1 2.14908382189161 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775391_s_at YIL172C.S1 Hypothetical protein /// Protein of unknown function, expression is induced during nitrogen limitation /// Hypothetical protein 2.14883996132796 218.754272460938 126.408622741699 FSP2 --- 5737 // cytoplasm // inferred from direct assay 4558 // alpha-glucosidase activity // inferred from sequence similarity /// 15926 // glucosidase activity // inferred from sequence similarity 112.026031494141 196.782531738281 240.726013183594 140.791213989258 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL172C /GEN=VTH1 /DB_XREF=GI:6322021 /SEG=NC_001141:-16784,18553 /DEF=Hypothetical ORF /NOTE=Yil172cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: glucosidase activity [goid GO:0015926] [evidence ISS] [pmid 10592175]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001434 // YIL172C SGDID:S0001434, Chr IX from 18553-16784, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0003757 // FSP2 SGDID:S0003757, Chr X from 18536-16767, reverse complement, Verified ORF // sgd // 11 // --- /// S0005517 // YOL157C SGDID:S0005517, Chr XV from 24293-22524, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016345 // cdna:Genscan chromosome:SGD1:IX:16784:18553:-1 // ensembl // 11 // --- /// GENEFINDER00000019134 // cdna:GeneFinder chromosome:SGD1:IX:16784:18553:-1 // ensembl // 11 // --- /// GENSCAN00000023972 // cdna:Genscan chromosome:SGD1:X:16767:18536:-1 // ensembl // 11 // --- /// GENEFINDER00000024359 // cdna:GeneFinder chromosome:SGD1:X:16767:18536:-1 // ensembl // 11 // --- /// GENSCAN00000017344 // cdna:Genscan chromosome:SGD1:XV:22524:24293:-1 // ensembl // 11 // --- /// GENEFINDER00000022723 // cdna:GeneFinder chromosome:SGD1:XV:22524:24293:-1 // ensembl // 11 // --- /// YIL172C // cdna:known chromosome:SGD1:IX:16784:18553:-1 gene:YIL172C // ensembl // 11 // --- /// YJL221C // cdna:known chromosome:SGD1:X:16767:18536:-1 gene:YJL221C // ensembl // 11 // --- /// YOL157C // cdna:known chromosome:SGD1:XV:22524:24293:-1 gene:YOL157C // ensembl // 11 // --- --- No cerevisiae_gene 1.93614727194024 1.75657861939503 -1.04097108968976 2.14883996132796 1.2567723065029 Max fold change below threshold 4 2.14883996132796 Max fold change at or above threshold -1.05376458344487 0.421138966320771 1.18582835989012 -0.553202742766017 172.581447601318 57.4657917513373 0.332977805842083 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771320_at YER006W.S1 GTPase that associates with nuclear 60S pre-ribosomes, required for export of 60S ribosomal subunits from the nucleus 2.14849178520038 1631.33203125 969.363067626953 NUG1 6364 // rRNA processing // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay 3924 // GTPase activity // traceable author statement 989.711242675781 1652.18676757813 1610.47729492188 949.014892578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER006W /GEN=NUG1 /DB_XREF=GI:6320842 /SEG=NC_001137:+162722,164284 /DEF=GTPase that associates with nuclear 60S pre-ribosomes, required for export of 60S ribosomal subuits from the nucleus /NOTE=Nug1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 10684247]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10684247]; go_function: GTPase activity [goid GO:0003924] [evidence TAS] [pmid 11583615]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 12089522] --- --- --- --- --- --- S0000808 // NUG1 SGDID:S0000808, Chr V from 162722-164284, Verified ORF // sgd // 11 // --- /// GENSCAN00000016808 // cdna:Genscan chromosome:SGD1:V:162722:164284:1 // ensembl // 11 // --- /// GENEFINDER00000019674 // cdna:GeneFinder chromosome:SGD1:V:162722:164284:1 // ensembl // 11 // --- /// YER006W // cdna:known chromosome:SGD1:V:162722:164284:1 gene:YER006W // ensembl // 11 // --- --- No cerevisiae_gene 2.14849178520038 1.66936243253262 -1.78401747465723 1.6272193600305 -1.04288273073049 Max fold change below threshold 4 2.14849178520038 Max fold change at or above threshold -0.811214011364268 0.918813729395678 0.809891147299656 -0.917490865331066 1300.34754943848 382.927689131354 0.294481032626018 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774971_at YGL133W.S1 Component of the ATP-dependent Isw2p-Itc1p chromatin remodeling complex, required for repression of a-specific genes, repression of early meiotic genes during mitotic growth, and repression of INO1 2.14819432443686 592.530822753906 1209.51867675781 ITC1 6338 // chromatin remodeling // traceable author statement /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 46020 // negative regulation of transcription from RNA polymerase II promoter by pheromones // inferred from mutant phenotype 8623 // chromatin accessibility complex // inferred from physical interaction --- 1214.86499023438 565.528442382813 619.533203125 1204.17236328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL133W /GEN=ITC1 /DB_XREF=GI:6321305 /SEG=NC_001139:+257710,261504 /DEF=Component of the ATP-dependent Isw2p-Itc1p chromatin remodeling complex, required for repression of a-specific genes, repression of early meiotic genes during mitotic growth, and repression of INO1 /NOTE=Itc1p; go_component: chromatin accessibility complex [goid GO:0008623] [evidence IPI,ISS] [pmid 14673157]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10806424]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin remodeling [goid GO:0006338] [evidence TAS] [pmid 12370299]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 14673157]; go_process: negative regulation of transcription from Pol II promoter by pheromones [goid GO:0046020] [evidence IMP] [pmid 12624196] --- --- --- --- --- --- S0003101 // ITC1 SGDID:S0003101, Chr VII from 257712-261506, Verified ORF // sgd // 11 // --- /// GENSCAN00000019250 // cdna:Genscan chromosome:SGD1:VII:257712:261506:1 // ensembl // 11 // --- /// GENEFINDER00000021528 // cdna:GeneFinder chromosome:SGD1:VII:258438:261506:1 // ensembl // 11 // --- /// YGL133W // cdna:known chromosome:SGD1:VII:257712:261506:1 gene:YGL133W // ensembl // 11 // --- --- No cerevisiae_gene -1.94306064968783 -2.14819432443686 1.00295975532582 -1.96093604685988 -1.00887964819587 Max fold change below threshold 4 2.14819432443686 Max fold change at or above threshold 0.87928551003862 -0.939959264926633 -0.788654245782797 0.849328000670809 901.024749755859 356.926432763268 0.396133882959353 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770904_at SPAC22A12.09c.S1 --- 2.14786303554172 --- --- --- --- 10.9987878799438 23.6238899230957 19.7882881164551 11.5407161712646 0.0561522990465164 0.0676269978284836 0.0461426004767418 0.111571997404099 M A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22A12.09c /GEN=sap114 /DEF=involved in mRNA splicing (predicted) --- --- --- --- --- --- SPAC22A12.09c // |sap114||complexed with Cdc5 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 9 // --- --- No No 1.12028120885471 2.14786303554172 1.04829644157906 1.7991335347542 1.04927163767828 Max fold change below threshold 4 2.14786303554172 Max fold change at or above threshold MPAAPA No 4 0 MAPA 2 1 1 No No x = 1
1778736_at SPBC32F12.06.S1 --- 2.14777446332369 --- --- --- --- 8.59295463562012 18.4557285308838 10.9233589172363 5.09521627426147 0.0107421996071935 0.00415039015933871 0.0561522990465164 0.064453125 P P M M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32F12.06 /GEN=pch1 /DEF=cyclin --- --- --- --- --- --- SPBC32F12.06 // |pch1||cyclin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.8705778771319 2.14777446332369 -1.55598714264585 1.27119941631672 -1.68647495475854 Max fold change below threshold 4 2.14777446332369 Max fold change at or above threshold PAPAMM No 3 0 PPMM 0 2 2 No No 1 < x = 2
1774275_at YML024W.S1 Ribosomal protein 51 (rp51) of the small (40s) subunit; nearly identical to Rps17Bp and has similarity to rat S17 ribosomal protein /// Ribosomal protein 51 (rp51) of the small (40s) subunit; nearly identical to Rps17Ap and has similarity to rat S17 ribosomal protein 2.14681033330221 3180.15405273438 5776.99462890625 RPS17A /// RPS17B 28 // ribosomal small subunit assembly and maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement /// 42729 // DASH complex // inferred from direct assay /// 42729 // DASH complex // inferred from physical interaction 3735 // structural constituent of ribosome // traceable author statement 6550.84130859375 3308.87817382813 3051.42993164063 5003.14794921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML024W /GEN=RPS17A /DB_XREF=GI:6323617 /SEG=NC_001145:+225889,226697 /DEF=Ribosomal protein 51 (rp51) of the small (40s) subunit; nearly identical to Rps17Bp and has similarity to rat S17 ribosomal protein /NOTE=Rps17ap; go_component: DASH complex [goid GO:0042729] [evidence IDA,IPI] [pmid 11799062]; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: ribosomal small subunit assembly and maintenance [goid GO:0000028] [evidence IMP] [pmid 3915776] --- --- --- --- --- --- S0004486 // RPS17A SGDID:S0004486, Chr XIII from 225889-225891,226290-226697, intron sequence removed, Verified ORF // sgd // 11 // --- /// YML024W // cdna:known chromosome:SGD1:XIII:225889:226697:1 gene:YML024W // ensembl // 11 // --- --- No cerevisiae_gene -1.09729236431048 -1.97977712217036 -1.55174763744077 -2.14681033330221 -1.30934391208972 Max fold change below threshold 4 2.14681033330221 Max fold change at or above threshold 1.27103460303476 -0.7174385957045 -0.875345674956155 0.321749667625893 4478.57434082031 1630.37808949153 0.364039528077344 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773059_at YGL124C.S1 Protein required for fusion of cvt-vesicles and autophagosomes with the vacuole; associates, as a complex with Ccz1p, with a perivacuolar compartment; potential Cdc28p substrate 2.14678538861839 292.681419372559 521.554290771484 MON1 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6914 // autophagy // inferred from mutant phenotype 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 5829 // cytosol // inferred from direct assay --- 521.427001953125 242.887344360352 342.475494384766 521.681579589844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL124C /GEN=MON1 /DB_XREF=GI:6321314 /SEG=NC_001139:-274784,276718 /DEF=Protein required for fusion of cvt-vesicles and autophagosomes with the vacuole; associates, as a complex with Ccz1p, with a perivacuolar compartment; potential Cdc28p substrate /NOTE=Mon1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 12387888]; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 12364329]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: autophagy [goid GO:0006914] [evidence IMP] [pmid 12387888]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 12134085] --- --- --- --- --- --- S0003092 // MON1 SGDID:S0003092, Chr VII from 276720-274786, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019257 // cdna:Genscan chromosome:SGD1:VII:274786:276720:-1 // ensembl // 11 // --- /// GENEFINDER00000021740 // cdna:GeneFinder chromosome:SGD1:VII:274786:276558:-1 // ensembl // 11 // --- /// YGL124C // cdna:known chromosome:SGD1:VII:274786:276720:-1 gene:YGL124C // ensembl // 11 // --- --- No cerevisiae_gene -1.3924408903377 -2.14678538861839 1.12088595889529 -1.52252353964722 1.00048823255368 Max fold change below threshold 4 2.14678538861839 Max fold change at or above threshold 0.826810988427381 -1.18789785941353 -0.467565506281848 0.828652377267994 407.117855072021 138.253057205399 0.339589766164743 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776770_at YNR051C.S1 Ubiquitin protease cofactor, forms deubiquitination complex with Ubp3p that coregulates anterograde and retrograde transport between the endoplasmic reticulum and Golgi compartments; null is sensitive to brefeldin A 2.14639337836116 227.607345581055 403.688766479492 BRE5 16579 // protein deubiquitination // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 406.554534912109 265.801818847656 189.412872314453 400.822998046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR051C /GEN=BRE5 /DB_XREF=GI:6324379 /SEG=NC_001146:-716779,718326 /DEF=protein of unknown function /NOTE=Bre5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein deubiquitination [goid GO:0016579] [evidence IMP] [pmid 12778054] --- --- --- --- --- --- S0005334 // BRE5 SGDID:S0005334, Chr XIV from 718327-716780, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020078 // cdna:Genscan chromosome:SGD1:XIV:716780:718270:-1 // ensembl // 11 // --- /// GENEFINDER00000020712 // cdna:GeneFinder chromosome:SGD1:XIV:716780:718027:-1 // ensembl // 11 // --- /// YNR051C // cdna:known chromosome:SGD1:XIV:716780:718327:-1 gene:YNR051C // ensembl // 11 // --- --- No cerevisiae_gene -1.44896758993087 -1.52954007867465 -1.35722208944069 -2.14639337836116 -1.01429942117384 Max fold change below threshold 4 2.14639337836116 Max fold change at or above threshold 0.854688155762971 -0.4686463391098 -1.18684298071556 0.800801164062389 315.648056030273 106.362160594919 0.336964408818401 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771215_at YOL064C.S1 Bisphosphate-3'-nucleotidase, involved in salt tolerance and methionine biogenesis; dephosphorylates 3'-phosphoadenosine-5'-phosphate and 3'-phosphoadenosine-5'-phosphosulfate, intermediates of the sulfate assimilation pathway 2.14537869693193 472.494888305664 879.9619140625 MET22 103 // sulfate assimilation // traceable author statement /// 9086 // methionine biosynthesis // traceable author statement /// 42538 // hyperosmotic salinity response // traceable author statement 5737 // cytoplasm // inferred from direct assay 8441 // 3'(2'),5'-bisphosphate nucleotidase activity // traceable author statement 850.070495605469 396.233306884766 548.756469726563 909.853332519531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL064C /GEN=MET22 /DB_XREF=GI:6324508 /SEG=NC_001147:-206102,207175 /DEF=Bisphosphate-3'-nucleotidase, involved in salt tolerance and methionine biogenesis; dephosphorylates 3'-phosphoadenosine-5'-phosphate and 3'-phosphoadenosine-5'-phosphosulfate, intermediates of the sulfate assimilation pathway /NOTE=Met22p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10656801]; go_function: 3'(2'),5'-bisphosphate nucleotidase activity [goid GO:0008441] [evidence TAS] [pmid 7809627]; go_process: hyperosmotic salinity response [goid GO:0042538] [evidence TAS] [pmid 8910555]; go_process: methionine biosynthesis [goid GO:0009086] [evidence TAS] [pmid 8393782]; go_process: sulfate assimilation [goid GO:0000103] [evidence TAS] [pmid 8910555] --- --- --- --- --- --- S0005425 // MET22 SGDID:S0005425, Chr XV from 207175-206102, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017416 // cdna:Genscan chromosome:SGD1:XV:206102:207175:-1 // ensembl // 11 // --- /// GENEFINDER00000022903 // cdna:GeneFinder chromosome:SGD1:XV:206102:207175:-1 // ensembl // 11 // --- /// YOL064C // cdna:known chromosome:SGD1:XV:206102:207175:-1 gene:YOL064C // ensembl // 11 // --- --- No cerevisiae_gene -1.26566190789362 -2.14537869693193 -1.08628013523403 -1.54908514523582 1.07032691667705 Max fold change below threshold 4 2.14537869693193 Max fold change at or above threshold 0.710798049481161 -1.14483185188641 -0.521201729334747 0.955235531739993 676.228401184082 244.573116862491 0.361672352764601 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778432_at SPAC144.05.S1 --- 2.14521814703447 --- --- --- --- 0.732259094715118 0.440369427204132 0.672752261161804 0.589425504207611 0.850341975688934 0.780517995357513 0.805419981479645 0.665526986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC144.05 /DEF=zinc finger protein --- --- --- --- --- --- SPAC144.05 // |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 2.14521814703447 -1.6628290918472 1.44257077317558 -1.0884528183533 -1.24232679021843 Max fold change below threshold 0 2.14521814703447 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770313_at YOL063C.S1 Protein of unknown function; not related to the HUS1 checkpoint protein identified in human and fission yeast 2.14500882951027 467.145462036133 946.035919189453 --- --- --- --- 926.654418945313 436.657806396484 497.633117675781 965.417419433594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL063C /GEN=MET22 /DB_XREF=GI:6324509 /SEG=NC_001147:-207391,210264 /DEF=MMS1 Related /NOTE=Yol063cp --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 0.870000004768372 --- S0005424 // HUS1 SGDID:S0005424, Chr XV from 210264-207391, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017417 // cdna:Genscan chromosome:SGD1:XV:207391:210264:-1 // ensembl // 11 // --- /// GENEFINDER00000022801 // cdna:GeneFinder chromosome:SGD1:XV:207391:210264:-1 // ensembl // 11 // --- /// YOL063C // cdna:known chromosome:SGD1:XV:207391:210264:-1 gene:YOL063C // ensembl // 11 // --- --- No cerevisiae_gene -2.14500882951027 -2.12215241631089 1.06671292226622 -1.86212369320052 1.04183112894708 Max fold change below threshold 4 2.14500882951027 Max fold change at or above threshold 0.791435129014959 -0.970784093607237 -0.751493055894111 0.930842020486389 706.590690612793 278.056558604388 0.393518570649782 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773308_at SPBP8B7.26.S1 --- 2.14482697883688 --- --- --- --- 17.5819435119629 14.075514793396 27.8549423217773 10.0044593811035 0.149657994508743 0.149657994508743 0.0561522990465164 0.00805663969367743 A A M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP8B7.26 /DEF=proline-rich protein --- --- --- --- --- --- SPBP8B7.26 // |||proline-rich protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.14482697883688 -1.24911548671826 -1.93605841862833 1.58429256144661 -1.75741065480977 Max fold change below threshold 4 2.14482697883688 Max fold change at or above threshold AAAAMP No 4 0 AAMP 2 1 1 No No x = 1
1774426_at YBL019W.S1 Class II abasic (AP) endonuclease involved in repair of DNA damage; homolog of human HAP1 and E. coli exoIII 2.14482317000872 209.446182250977 211.269592285156 APN2 6281 // DNA repair // inferred from mutant phenotype 5634 // nucleus // inferred from curator 4528 // phosphodiesterase I activity // inferred from direct assay /// 8311 // double-stranded DNA specific 3'-5' exodeoxyribonuclease activity // inferred from direct assay 169.613922119141 215.452590942383 203.43977355957 252.925262451172 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL019W /GEN=APN2 /DB_XREF=GI:6319452 /SEG=NC_001134:+184318,185880 /DEF=AP endonuclease 2, homolog of human HAP1 and E. coli exoIII /NOTE=Apn2p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 11238902]; go_function: double-stranded DNA specific 3'-5' exodeoxyribonuclease activity [goid GO:0008311] [evidence IDA] [pmid 11238902]; go_function: phosphodiesterase I activity [goid GO:0004528] [evidence IDA] [pmid 11238902]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 11238902] --- --- --- --- --- --- S0000115 // APN2 SGDID:S0000115, Chr II from 184356-185918, Verified ORF // sgd // 11 // --- /// GENSCAN00000021123 // cdna:Genscan chromosome:SGD1:II:184356:185918:1 // ensembl // 11 // --- /// YBL019W // cdna:known chromosome:SGD1:II:184356:185918:1 gene:YBL019W // ensembl // 11 // --- GENEFINDER00000022392 // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene -1.71813327235169 1.27025298543031 2.14482317000872 1.1994285080954 1.49118220539415 Max fold change below threshold 4 2.14482317000872 Max fold change at or above threshold -1.18512077310735 0.148189778171796 -0.201227353221256 1.23815834815681 210.357887268066 34.3795890456771 0.1634338008057 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770597_at YKL027W.S1 Hypothetical protein 2.14447570272029 255.286933898926 129.521003723145 --- --- 5739 // mitochondrion // inferred from direct assay --- 126.528991699219 239.23551940918 271.338348388672 132.51301574707 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL027W /GEN=TFA1 /DB_XREF=GI:6322825 /SEG=NC_001143:+387205,388548 /DEF=Hypothetical ORF /NOTE=Ykl027wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001510 // span:7-29 // numtm:1 S0001510 // YKL027W SGDID:S0001510, Chr XI from 387205-388548, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018396 // cdna:Genscan chromosome:SGD1:XI:387205:388548:1 // ensembl // 11 // --- /// GENEFINDER00000023142 // cdna:GeneFinder chromosome:SGD1:XI:387205:388548:1 // ensembl // 11 // --- /// YKL027W // cdna:known chromosome:SGD1:XI:387205:388548:1 gene:YKL027W // ensembl // 11 // --- --- No cerevisiae_gene 1.77700753623524 1.89075654675162 1.06699895468081 2.14447570272029 1.04729369899728 Max fold change below threshold 4 2.14447570272029 Max fold change at or above threshold -0.892315937416544 0.634361343332562 1.06921334921539 -0.811258755131405 192.403968811035 73.8247232281196 0.383696467824033 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779551_at YKL058W.S1 Transcription factor IIA, small chain 2.14367653255014 798.103942871094 396.92594909668 TOA2 6367 // transcription initiation from RNA polymerase II promoter // inferred from direct assay 5672 // transcription factor TFIIA complex // inferred from direct assay 16251 // general RNA polymerase II transcription factor activity // inferred from direct assay 379.024383544922 783.702209472656 812.505676269531 414.827514648438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL058W /GEN=TOA2 /DB_XREF=GI:6322792 /SEG=NC_001143:+329811,330179 /DEF=Transcription factor IIA, small chain /NOTE=Toa2p; go_component: transcription factor TFIIA complex [goid GO:0005672] [evidence IDA] [pmid 7862117]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence IDA] [pmid 7862117]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence IDA] [pmid 7862117] --- --- --- --- --- --- S0001541 // TOA2 SGDID:S0001541, Chr XI from 329811-330179, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023087 // cdna:GeneFinder chromosome:SGD1:XI:329811:330179:1 // ensembl // 10 // --- /// YKL058W // cdna:known chromosome:SGD1:XI:329811:330179:1 gene:YKL058W // ensembl // 10 // --- --- No cerevisiae_gene 1.56426020849975 2.06768282858977 1.21410713525124 2.14367653255014 1.09446128707778 Max fold change below threshold 4 2.14367653255014 Max fold change at or above threshold -0.940235027831899 0.801223562766978 0.925174126595017 -0.786162661530096 597.514945983887 232.378667004978 0.388908542902363 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772076_at YGL090W.S1 Protein involved in DNA double-strand break repair; physically interacts with DNA ligase 4 (Lig4p); homologous to mammalian XRCC4 protein 2.14357436817028 117.762855529785 80.7005996704102 LIF1 6303 // double-strand break repair via nonhomologous end-joining // inferred from physical interaction /// 6303 // double-strand break repair via nonhomologous end-joining // inferred from direct assay 5634 // nucleus // traceable author statement 5198 // structural molecule activity // traceable author statement 72.8432235717773 82.1880035400391 153.337707519531 88.557975769043 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL090W /GEN=LIF1 /DB_XREF=GI:6321348 /SEG=NC_001139:+343320,344585 /DEF=Ligase Interacting Factor 1; physically interacts with DNA ligase 4 protein (Lig4p) /NOTE=Lif1p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 9670033]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 12399380]; go_process: double-strand break repair via nonhomologous end-joining [goid GO:0006303] [evidence IPI] [pmid 9670033] --- --- --- --- --- --- S0003058 // LIF1 SGDID:S0003058, Chr VII from 343322-344587, Verified ORF // sgd // 11 // --- /// GENSCAN00000019285 // cdna:Genscan chromosome:SGD1:VII:343322:344587:1 // ensembl // 11 // --- /// GENEFINDER00000021426 // cdna:GeneFinder chromosome:SGD1:VII:343322:344587:1 // ensembl // 11 // --- /// YGL090W // cdna:known chromosome:SGD1:VII:343322:344587:1 gene:YGL090W // ensembl // 11 // --- --- No cerevisiae_gene 1.11371484273659 1.12828619479002 2.14357436817028 2.10503736656351 1.21573389296509 Max fold change below threshold 4 2.14357436817028 Max fold change at or above threshold -0.720142415977689 -0.465123320696589 1.47655248119427 -0.291286744519988 99.2317276000977 36.6434519656704 0.369271530909378 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777967_at YDR478W.S1 Subunit of RNase MRP, which cleaves pre-rRNA; not shared between Rnase MRP and nuclear Rnase P, in contrast to all other Rnase MRP protein subunits; binds to the NME1 RNA subunit of Rnase MRP 2.14320934175296 487.433883666992 316.771820068359 SNM1 6364 // rRNA processing // traceable author statement 172 // ribonuclease MRP complex // traceable author statement 171 // ribonuclease MRP activity // traceable author statement 286.027374267578 454.553253173828 520.314514160156 347.516265869141 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR478W /GEN=SNM1 /DB_XREF=GI:6320686 /SEG=NC_001136:+1414563,1415159 /DEF=Subunit of RNase MRP, which cleaves pre-rRNA; not shared between Rnase MRP and nuclear Rnase P, in contrast to all other Rnase MRP protein subunits; binds to the NME1 RNA subunit of Rnase MRP /NOTE=Snm1p; go_component: ribonuclease MRP complex [goid GO:0000172] [evidence TAS] [pmid 10690410]; go_function: ribonuclease MRP activity [goid GO:0000171] [evidence TAS] [pmid 10690410]; go_process: rRNA processing [goid GO:0006364] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0002886 // SNM1 SGDID:S0002886, Chr IV from 1414565-1415161, Verified ORF // sgd // 11 // --- /// YDR478W // cdna:known chromosome:SGD1:IV:1414565:1415161:1 gene:YDR478W // ensembl // 11 // --- --- No cerevisiae_gene 2.14320934175296 1.58919493051247 1.53002370220682 1.81910740359209 1.21497554826357 Max fold change below threshold 4 2.14320934175296 Max fold change at or above threshold -1.10375922320037 0.498749739386623 1.12407215755504 -0.519062673741286 402.102851867676 105.163766843582 0.261534496348685 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773515_at YCR005C.S1 Citrate synthase, catalyzes the condensation of acetyl coenzyme A and oxaloacetate to form citrate, peroxisomal isozyme involved in glyoxylate cycle; expression is controlled by Rtg1p and Rtg2p transcription factors 2.14274175066866 7201.85717773438 3715.44421386719 CIT2 6097 // glyoxylate cycle // traceable author statement /// 6101 // citrate metabolism // traceable author statement /// 6537 // glutamate biosynthesis // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5777 // peroxisome // inferred from direct assay 4108 // citrate (Si)-synthase activity // traceable author statement 4020.52294921875 8614.9423828125 5788.77197265625 3410.36547851563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR005C /GEN=CIT2 /DB_XREF=GI:6319850 /SEG=NC_001135:-120943,122325 /DEF=non-mitochondrial citrate synthase /NOTE=Cit2p; go_component: peroxisome [goid GO:0005777] [evidence IDA] [pmid 10077615]; go_function: citrate (Si)-synthase activity [goid GO:0004108] [evidence TAS] [pmid 9175438]; go_process: citrate metabolism [goid GO:0006101] [evidence TAS] [pmid 9175438]; go_process: glutamate biosynthesis [goid GO:0006537] [evidence TAS] [pmid 9175438]; go_process: glyoxylate cycle [goid GO:0006097] [evidence TAS] [pmid 9175438] --- --- --- --- --- --- S0000598 // CIT2 SGDID:S0000598, Chr III from 122325-120943, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022464 // cdna:Genscan chromosome:SGD1:III:120943:122325:-1 // ensembl // 11 // --- /// GENEFINDER00000023296 // cdna:GeneFinder chromosome:SGD1:III:120943:122325:-1 // ensembl // 11 // --- /// YCR005C // cdna:known chromosome:SGD1:III:120943:122325:-1 gene:YCR005C // ensembl // 11 // --- --- No cerevisiae_gene 1.27528679452385 2.14274175066866 1.21150564043298 1.43980572820287 -1.1789126340115 Max fold change below threshold 4 2.14274175066866 Max fold change at or above threshold -0.616312018455679 1.35263400979526 0.14147401783848 -0.877796009178059 5458.65069580078 2333.44102259374 0.427475790746018 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770149_at YIL143C.S1 Component of the holoenzyme form of RNA polymerase transcription factor TFIIH, has DNA-dependent ATPase/helicase activity and is required, with Rad3p, for unwinding promoter DNA; involved in DNA repair; homolog of human ERCC3 2.14251291723857 781.073150634766 836.862945556641 SSL2 717 // nucleotide-excision repair, DNA duplex unwinding // traceable author statement /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 7070 // negative regulation of transcription from RNA polymerase II promoter, mitotic // traceable author statement 112 // nucleotide excision repair factor 3 complex // traceable author statement /// 5675 // transcription factor TFIIH complex // traceable author statement 3678 // DNA helicase activity // traceable author statement /// 16251 // general RNA polymerase II transcription factor activity // traceable author statement 771.479553222656 720.081359863281 842.06494140625 902.246337890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL143C /GEN=SSL2 /DB_XREF=GI:6322048 /SEG=NC_001141:-80510,83041 /DEF=DNA helicase homolog; homolog of human XPBC, ERCC3 /NOTE=Ssl2p; go_component: nucleotide excision repair factor 3 complex [goid GO:0000112] [evidence TAS] [pmid 10915862]; go_component: transcription factor TFIIH complex [goid GO:0005675] [evidence TAS] [pmid 9774381]; go_function: DNA helicase activity [goid GO:0003678] [evidence TAS] [pmid 9774381]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9774381]; go_process: negative regulation of transcription from Pol II promoter, mitotic [goid GO:0007070] [evidence TAS] [pmid 10384273]; go_process: nucleotide-excision repair, DNA duplex unwinding [goid GO:0000717] [evidence TAS] [pmid 10915862]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 10384286] --- --- --- --- --- --- S0001405 // SSL2 SGDID:S0001405, Chr IX from 83041-80510, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000016367 // cdna:Genscan chromosome:SGD1:IX:80510:83041:-1 // ensembl // 10 // --- /// GENEFINDER00000019010 // cdna:GeneFinder chromosome:SGD1:IX:80510:82987:-1 // ensembl // 10 // --- /// YIL143C // cdna:known chromosome:SGD1:IX:80510:83041:-1 gene:YIL143C // ensembl // 10 // --- --- No cerevisiae_gene -2.14251291723857 -1.07137831392988 -1.00285712925592 1.09149353069533 1.16950129672488 Max fold change below threshold 4 2.14251291723857 Max fold change at or above threshold -0.469800873304703 -1.11391625345776 0.414765901741944 1.16895122502052 808.968048095703 79.7965627635873 0.098639943754796 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776542_at YNL231C.S1 Phosphatidylinositol transfer protein (PITP) controlled by the multiple drug resistance regulator Pdr1p, localizes to lipid particles and microsomes, controls levels of various lipids, may regulate lipid synthesis, homologous to Pdr17p 2.14226856090396 2610.95007324219 1407.58697509766 PDR16 15914 // phospholipid transport // inferred from direct assay /// 16126 // sterol biosynthesis // inferred from mutant phenotype /// 42493 // response to drug // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay /// 5792 // microsome // inferred from direct assay /// 5811 // lipid particle // inferred from direct assay 8526 // phosphatidylinositol transporter activity // inferred from direct assay 1464.13610839844 3136.57275390625 2085.32739257813 1351.03784179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL231C /GEN=PDR16 /DB_XREF=GI:6324098 /SEG=NC_001146:-215986,217041 /DEF=involved in pleiotropic drug resistance by controlling lipids in various cellular compartments; positively regulated by PDR1; putative phosphatidylinositol transfer protein. /NOTE=Pdr16p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 12869188]; go_component: microsome [goid GO:0005792] [evidence IDA] [pmid 12869188]; go_function: phosphatidylinositol transporter activity [goid GO:0008526] [evidence IDA] [pmid 10848624]; go_process: phospholipid transport [goid GO:0015914] [evidence IDA] [pmid 10848624]; go_process: response to drug [goid GO:0042493] [evidence IGI] [pmid 9890948]; go_process: sterol biosynthesis [goid GO:0016126] [evidence IMP] [pmid 9890948] --- --- --- --- --- --- S0005175 // PDR16 SGDID:S0005175, Chr XIV from 217041-215986, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019855 // cdna:Genscan chromosome:SGD1:XIV:215986:216903:-1 // ensembl // 11 // --- /// GENEFINDER00000020540 // cdna:GeneFinder chromosome:SGD1:XIV:215986:222430:-1 // ensembl // 11 // --- /// YNL231C // cdna:known chromosome:SGD1:XIV:215986:217041:-1 gene:YNL231C // ensembl // 11 // --- --- No cerevisiae_gene 1.0727137934884 2.14226856090396 1.44154071762834 1.42427154184401 -1.08371213825598 Max fold change below threshold 4 2.14226856090396 Max fold change at or above threshold -0.666476700812492 1.3782376210069 0.0929892668600361 -0.804750187054445 2009.26852416992 817.931692296102 0.407079333825731 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774831_at SPCC4G3.04c.S1 --- 2.1417985482966 --- --- --- --- 2.16965818405151 2.66310572624207 1.90349638462067 4.64697074890137 0.5 0.567627012729645 0.366210997104645 0.0107421996071935 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4G3.04c /GEN=coq5 /DEF=C-methytransferase (predicted) --- --- --- --- --- --- SPCC4G3.04c // |coq5||C-methytransferase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.06362801017911 1.22743100540801 1.27278294579266 -1.13982784605282 2.1417985482966 Max fold change below threshold 2 2.1417985482966 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1775667_at YJL093C.S1 Outward-rectifier potassium channel of the plasma membrane with two pore domains in tandem, each of which forms a functional channel permeable to potassium; carboxy tail functions to prevent inner gate closures; target of K1 toxin 2.14064155234366 773.611846923828 1478.85021972656 TOK1 30007 // potassium ion homeostasis // inferred from mutant phenotype /// 30007 // potassium ion homeostasis // inferred from direct assay 5886 // plasma membrane // inferred from mutant phenotype /// 5886 // plasma membrane // inferred from direct assay 5267 // potassium channel activity // inferred from mutant phenotype /// 5267 // potassium channel activity // inferred from direct assay /// 5267 // potassium channel activity // inferred from sequence similarity 1465.21374511719 684.47412109375 862.749572753906 1492.48669433594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL093C /GEN=TOK1 /DB_XREF=GI:6322368 /SEG=NC_001142:-254653,256728 /DEF=Target Of K1 Killer Toxin /NOTE=Tok1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA,IMP] [pmid 7651518]; go_function: potassium channel activity [goid GO:0005267] [evidence IDA,IMP,ISS] [pmid 7651518]; go_process: potassium ion homeostasis [goid GO:0030007] [evidence IDA,IMP] [pmid 7651518] --- --- --- --- --- S0003629 // span:71-93,139-161,171-193,206-228,248-270,277-294,298-320,378-400,405-424,437-459 // numtm:10 S0003629 // TOK1 SGDID:S0003629, Chr X from 256728-254653, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024067 // cdna:Genscan chromosome:SGD1:X:254653:256677:-1 // ensembl // 11 // --- /// GENEFINDER00000024389 // cdna:GeneFinder chromosome:SGD1:X:254653:256677:-1 // ensembl // 11 // --- /// YJL093C // cdna:known chromosome:SGD1:X:254653:256728:-1 gene:YJL093C // ensembl // 11 // --- --- No cerevisiae_gene -2.11235525771046 -2.14064155234366 -1.0752631176297 -1.69830712339875 1.01861363184016 Max fold change below threshold 4 2.14064155234366 Max fold change at or above threshold 0.819248140715345 -1.0676312283909 -0.636777892137599 0.885160979813155 1126.2310333252 413.77294002279 0.367396144999775 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775387_at YFL027C.S1 GTPase-activating protein for yeast Rab family members; Ypt1p is the preferred in vitro substrate but also acts on Sec4p, Ypt31p and Ypt32p; involved in the regulation of ER to Golgi vesicle transport 2.14051080511978 190.777313232422 129.38366317749 GYP8 16192 // vesicle-mediated transport // inferred from genetic interaction 5622 // intracellular // inferred from direct assay 5097 // Rab GTPase activator activity // inferred from genetic interaction /// 5097 // Rab GTPase activator activity // inferred from physical interaction /// 5097 // Rab GTPase activator activity // inferred from sequence similarity 122.679374694824 118.958099365234 262.596527099609 136.087951660156 0.00195312988944352 0.000244141003349796 0.00122069998178631 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL027C /GEN=GYP8 /DB_XREF=GI:16740526 /SEG=NC_001138:-80417,81910 /DEF=GTPase-activating protein for yeast Rab family members; Ypt1p is the preferred in vitro substrate but also acts on Sec4p, Ypt31p and Ypt32p; involved in the regulation of ER to Golgi vesicle transport /NOTE=Gyp8p; go_component: intracellular [goid GO:0005622] [evidence IDA] [pmid 12189143]; go_function: Rab GTPase activator activity [goid GO:0005097] [evidence IGI,IPI,ISS] [pmid 12189143]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IGI] [pmid 12189143] --- --- --- --- --- --- S0001867 // GYP8 SGDID:S0001867, Chr VI from 81910-80417, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018550 // cdna:GeneFinder chromosome:SGD1:VI:80417:81085:-1 // ensembl // 11 // --- /// GENSCAN00000023219 // cdna:Genscan chromosome:SGD1:VI:80417:81910:-1 // ensembl // 11 // --- /// YFL027C // cdna:known chromosome:SGD1:VI:80417:81910:-1 gene:YFL027C // ensembl // 11 // --- --- No cerevisiae_gene 1.18257337406096 -1.03128223592548 1.3290267789506 2.14051080511978 1.10929772831568 Max fold change below threshold 4 2.14051080511978 Max fold change at or above threshold -0.544104714842369 -0.598241163253402 1.49138501169047 -0.349039133594699 160.080488204956 68.7388153233835 0.429401584753883 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778200_at YER187W.S1 Hypothetical protein 2.14024466926753 167.84253692627 105.013805389404 --- --- --- --- 100.099502563477 121.447647094727 214.237426757813 109.928108215332 0.000732421991415322 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER187W /GEN=FAU1 /DB_XREF=GI:6321035 /SEG=NC_001137:+566225,566650 /DEF=Hypothetical ORF /NOTE=Yer187wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0007427 // span:4-23,44-66,76-98 // numtm:3 S0000989 // YER187W SGDID:S0000989, Chr V from 566225-566650, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016963 // cdna:Genscan chromosome:SGD1:V:566225:566650:1 // ensembl // 11 // --- /// GENEFINDER00000019653 // cdna:GeneFinder chromosome:SGD1:V:566225:566650:1 // ensembl // 11 // --- /// YER187W // cdna:known chromosome:SGD1:V:566225:566650:1 gene:YER187W // ensembl // 11 // --- S0007427 // sgd // 1 // Cross Hyb Matching Probes /// YER186W-A // ensembl // 1 // Cross Hyb Matching Probes No cerevisiae_gene 1.15964042431534 1.21326923695462 1.48981947131768 2.14024466926753 1.09818835658672 Max fold change below threshold 4 2.14024466926753 Max fold change at or above threshold -0.690640716257815 -0.284793257479029 1.47922404256227 -0.503790068825422 136.428171157837 52.601400032139 0.385561131441711 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775020_at YER005W.S1 Apyrase with wide substrate specificity, involved in preventing the inhibition of glycosylation by hydrolyzing nucleoside tri- and diphosphates which are inhibitors of glycotransferases; partially redundant with Gda1p 2.14005874528262 317.622985839844 611.561401367188 YND1 6486 // protein amino acid glycosylation // inferred from mutant phenotype 5794 // Golgi apparatus // inferred from direct assay /// 30137 // COPI-coated vesicle // inferred from direct assay 17110 // nucleoside-diphosphatase activity // inferred from direct assay 564.229675292969 263.651489257813 371.594482421875 658.893127441406 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER005W /GEN=YND1 /DB_XREF=GI:6320841 /SEG=NC_001137:+160549,162441 /DEF=Yeast Nucleoside Diphosphatase /NOTE=Ynd1p; go_component: COPI-coated vesicle [goid GO:0030137] [evidence IDA] [pmid 14562095]; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 14562095]; go_function: nucleoside-diphosphatase activity [goid GO:0017110] [evidence IDA] [pmid 10409709]; go_process: protein amino acid glycosylation [goid GO:0006486] [evidence IMP] [pmid 10409709] --- --- --- --- --- S0000807 // span:501-518 // numtm:1 S0000807 // YND1 SGDID:S0000807, Chr V from 160549-162441, Verified ORF // sgd // 11 // --- /// GENSCAN00000016807 // cdna:Genscan chromosome:SGD1:V:160876:162441:1 // ensembl // 11 // --- /// YER005W // cdna:known chromosome:SGD1:V:160549:162441:1 gene:YER005W // ensembl // 11 // --- --- No cerevisiae_gene -1.91176446866623 -2.14005874528262 1.3086199024073 -1.51840165014182 1.167774678103 Max fold change below threshold 4 2.14005874528262 Max fold change at or above threshold 0.55495294703676 -1.11918360606352 -0.517971279611214 1.08220193863797 464.592193603516 179.542215644551 0.386451210580979 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779057_at YPL186C.S1 Protein of unknown function that interacts with Ulp1p, a Ubl (ubiquitin-like protein)-specific protease for Smt3p protein conjugates 2.14003445266771 1237.3779296875 957.685577392578 UIP4 --- 5635 // nuclear membrane // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay --- 888.508239746094 1125.44384765625 1349.31201171875 1026.86291503906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL186C /GEN=UIP4 /DB_XREF=GI:6325071 /SEG=NC_001148:-194511,195425 /DEF=Ulp1 Interacting Protein 4 /NOTE=Uip4p; go_component: nuclear membrane [goid GO:0005635] [evidence IPI] [pmid 11056382]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006107 // UIP4 SGDID:S0006107, Chr XVI from 195425-194511, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017044 // cdna:Genscan chromosome:SGD1:XVI:194511:195425:-1 // ensembl // 10 // --- /// GENEFINDER00000020940 // cdna:GeneFinder chromosome:SGD1:XVI:194511:195338:-1 // ensembl // 10 // --- /// YPL186C // cdna:known chromosome:SGD1:XVI:194511:195425:-1 gene:YPL186C // ensembl // 10 // --- --- No cerevisiae_gene -2.14003445266771 1.26666675367903 1.31718512179337 1.51862633497281 1.1557156918798 Max fold change below threshold 4 2.14003445266771 Max fold change at or above threshold -1.07768279239012 0.143909089377701 1.2981278841682 -0.364354181155788 1097.53175354004 193.956436225883 0.176720569222973 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774349_at YKL009W.S1 Protein involved in mRNA turnover and ribosome assembly, localizes to the nucleolus 2.13982151851789 773.478149414063 676.802886962891 MRT4 6364 // rRNA processing // inferred from mutant phenotype /// 6402 // mRNA catabolism // inferred from mutant phenotype /// 42273 // ribosomal large subunit biogenesis // inferred from mutant phenotype /// 42273 // ribosomal large subunit biogenesis // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 673.603942871094 771.32568359375 775.630615234375 680.001831054688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL009W /GEN=MRT4 /DB_XREF=GI:6322843 /SEG=NC_001143:+425885,426595 /DEF=Protein involved in mRNA turnover and ribosome assembly, localizes to the nucleolus /NOTE=Mrt4p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mRNA catabolism [goid GO:0006402] [evidence IMP] [pmid 10471698]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 12837249]; go_process: ribosomal large subunit biogenesis [goid GO:0042273] [evidence IMP,IPI] [pmid 11583614] --- --- --- --- --- --- S0001492 // MRT4 SGDID:S0001492, Chr XI from 425885-426595, Verified ORF // sgd // 11 // --- /// GENSCAN00000018411 // cdna:Genscan chromosome:SGD1:XI:425885:426595:1 // ensembl // 11 // --- /// GENEFINDER00000023133 // cdna:GeneFinder chromosome:SGD1:XI:425885:426595:1 // ensembl // 11 // --- /// YKL009W // cdna:known chromosome:SGD1:XI:425885:426595:1 gene:YKL009W // ensembl // 11 // --- --- No cerevisiae_gene 2.13982151851789 1.14507299394083 -1.08725215897291 1.15146388830269 1.00949799693322 Max fold change below threshold 4 2.13982151851789 Max fold change at or above threshold -0.921873032396603 0.826148385330085 0.903153897655319 -0.8074292505888 725.140518188477 55.9042010193124 0.0770943005073976 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779912_at YKL198C.S1 Putative serine/threonine protein kinase that regulates spermine uptake; involved in polyamine transport; possible mitochondrial protein 2.13935575700642 3233.05212402344 1676.5751953125 PTK1 15846 // polyamine transport // inferred from genetic interaction /// 15846 // polyamine transport // inferred from mutant phenotype --- 4672 // protein kinase activity // inferred from sequence similarity 1760.86706542969 2698.98315429688 3767.12109375 1592.28332519531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL198C /GEN=PTK1 /DB_XREF=GI:27808711 /SEG=NC_001143:-68274,70223 /DEF=Putative serine/threonine protein kinase /NOTE=Ptk1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 8920934]; go_process: polyamine transport [goid GO:0015846] [evidence IGI,IMP] [pmid 7488221] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 5.0E-46 /// hanks // 3.1.3 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk3 // 1.0E-52 --- --- S0001681 // PTK1 SGDID:S0001681, Chr XI from 70223-68274, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018268 // cdna:Genscan chromosome:SGD1:XI:68274:70223:-1 // ensembl // 11 // --- /// GENEFINDER00000023003 // cdna:GeneFinder chromosome:SGD1:XI:68274:70223:-1 // ensembl // 11 // --- /// YKL198C // cdna:known chromosome:SGD1:XI:68274:70223:-1 gene:YKL198C // ensembl // 11 // --- --- No cerevisiae_gene -1.25140108984933 1.53275804135633 1.22725322517683 2.13935575700642 -1.10587546673812 Max fold change below threshold 4 2.13935575700642 Max fold change at or above threshold -0.693104982976444 0.243873368387805 1.31071588118057 -0.861484266591935 2454.81365966797 1001.21426231597 0.407857540784334 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772734_at YNL067W.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl9Ap and has similarity to E. coli L6 and rat L9 ribosomal proteins /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl9Bp and has similarity to E. coli L6 and rat L9 ribosomal proteins 2.13920803435341 961.144897460938 888.501831054688 RPL9B /// RPL9A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 868.244262695313 903.75341796875 1018.53637695313 908.759399414063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL067W /GEN=RPL9B /DB_XREF=GI:6324262 /SEG=NC_001146:+499680,500255 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl9Ap and has similarity to E. coli L6 and rat L9 ribosomal proteins /NOTE=Rpl9bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0005011 // RPL9B SGDID:S0005011, Chr XIV from 499680-500255, Verified ORF // sgd // 11 // --- /// GENSCAN00000019979 // cdna:Genscan chromosome:SGD1:XIV:499680:500255:1 // ensembl // 11 // --- /// GENEFINDER00000020598 // cdna:GeneFinder chromosome:SGD1:XIV:499680:500255:1 // ensembl // 11 // --- /// YNL067W // cdna:known chromosome:SGD1:XIV:499680:500255:1 gene:YNL067W // ensembl // 11 // --- --- No cerevisiae_gene 2.13920803435341 1.04089765610798 -1.45231059301663 1.17309888555008 1.0466632933375 Max fold change below threshold 4 2.13920803435341 Max fold change at or above threshold -0.87009367277391 -0.324021174700841 1.44115224793205 -0.247037400457297 924.823364257813 65.0264486835337 0.0703122901049527 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774893_at YJR151W-A.S1 Identified by fungal homology and RT-PCR 2.13900038393598 41.5008563995361 20.0073375701904 --- --- --- --- 27.26708984375 42.6224899291992 40.379222869873 12.7475852966309 0.030273400247097 0.00415039015933871 0.00195312988944352 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR151W-A /GEN=DAN4 /DB_XREF=GI:33438826 /SEG=NC_001142:+717495,717545 /DEF=Identified by fungal homology and RT-PCR /NOTE=Yjr151w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028557 // YJR151W-A SGDID:S0028557, Chr X from 717495-717545, Uncharacterized ORF // sgd // 11 // --- /// YJR151W-A // cdna:known chromosome:SGD1:X:717495:717545:1 gene:YJR151W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.35698856121875 1.56314774233118 -1.42153137856885 1.48087761111509 -2.13900038393598 Max fold change below threshold 4 2.13900038393598 Max fold change at or above threshold -0.252997283101027 0.861102672916736 0.698344052612232 -1.30644944242794 30.7540969848633 13.7827849310178 0.448160937315164 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1771448_at SPBP4H10.17c.S1 --- 2.13869906243052 --- --- --- --- 8.93538570404053 10.3949403762817 14.3523778915405 9.97165203094482 0.274170011281967 0.398925989866257 0.219482004642487 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP4H10.17c /GEN=ppe1 /DEF=carboxyl methyl esterase --- --- --- --- --- --- SPBP4H10.17c // |||mitochondrial ribosomal small subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.54830658761836 1.16334545822473 -2.13869906243052 1.60624044298955 1.11597331791013 Max fold change below threshold 4 2.13869906243052 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775091_at YHR058C.S1 RNA polymerase II transcriptional regulation mediator; RNA polymerase II mediator subunit 2.13811088676176 244.489288330078 375.224990844727 MED6 6366 // transcription from RNA polymerase II promoter // traceable author statement /// 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 119 // mediator complex // traceable author statement /// 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from direct assay /// 16455 // RNA polymerase II transcription mediator activity // traceable author statement 347.910339355469 162.718566894531 326.260009765625 402.539642333984 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR058C /GEN=MED6 /DB_XREF=GI:6321849 /SEG=NC_001140:-218998,219885 /DEF=RNA polymerase II transcriptional regulation mediator /NOTE=Med6p; go_component: mediator complex [goid GO:0000119] [evidence IDA] [pmid 9420330]; go_component: mediator complex [goid GO:0000119] [evidence TAS] [pmid 9774381]; go_function: RNA polymerase II transcription mediator activity [goid GO:0016455] [evidence IDA] [pmid 9420330]; go_function: RNA polymerase II transcription mediator activity [goid GO:0016455] [evidence TAS] [pmid 9774381]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IDA] [pmid 9420330]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence TAS] [pmid 9774381] --- --- --- --- --- --- S0001100 // MED6 SGDID:S0001100, Chr VIII from 219885-218998, reverse complement, Verified ORF // sgd // 11 // --- /// U78080 // Saccharomyces cerevisiae RNA polymerase II transcriptional regulation mediator (y-MED6) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000016604 // cdna:Genscan chromosome:SGD1:VIII:218998:219885:-1 // ensembl // 11 // --- /// GENEFINDER00000020112 // cdna:GeneFinder chromosome:SGD1:VIII:218998:219885:-1 // ensembl // 11 // --- /// YHR058C // cdna:known chromosome:SGD1:VIII:218998:219885:-1 gene:YHR058C // ensembl // 11 // --- --- No cerevisiae_gene 1.82876033545006 -2.13811088676176 1.41447709477782 -1.0663591275112 1.15702121149869 Max fold change below threshold 4 2.13811088676176 Max fold change at or above threshold 0.368696865496925 -1.42562336087906 0.158927156105774 0.897999339276359 309.857139587402 103.20998991076 0.333088952051231 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777737_at YNL223W.S1 Cysteine protease required for autophagy; cleaves Atg8p to a form required for autophagosome and Cvt vesicle generation; mediates attachment of autophagosomes to microtubules through interactions with Tub1p and Tub2p 2.13803834368747 322.842338562012 251.990997314453 ATG4 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6914 // autophagy // inferred from genetic interaction /// 6914 // autophagy // inferred from mutant phenotype 5875 // microtubule associated complex // inferred from physical interaction 4197 // cysteine-type endopeptidase activity // inferred from direct assay /// 8017 // microtubule binding // inferred from physical interaction 239.847961425781 245.701889038086 399.982788085938 264.134033203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL223W /GEN=ATG4 /DB_XREF=GI:37362688 /SEG=NC_001146:+227369,228853 /DEF=Involved in autophagy. Interacts with Tub1p and Tub2p and forms a complex with Aut7p. Required for sporulation. /NOTE=Atg4p; go_component: microtubule associated complex [goid GO:0005875] [evidence IPI] [pmid 9649430]; go_function: microtubule binding [goid GO:0008017] [evidence IPI] [pmid 9649430]; go_process: autophagy [goid GO:0006914] [evidence IMP] [pmid 8224160]; go_process: autophagy [goid GO:0006914] [evidence IGI] [pmid 9649430]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 9649430] --- --- --- --- --- --- S0005167 // ATG4 SGDID:S0005167, Chr XIV from 227369-228853, Verified ORF // sgd // 11 // --- /// GENSCAN00000019861 // cdna:Genscan chromosome:SGD1:XIV:227333:228853:1 // ensembl // 11 // --- /// YNL223W // cdna:known chromosome:SGD1:XIV:227369:228853:1 gene:YNL223W // ensembl // 11 // --- GENEFINDER00000020454 // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene -2.03724123674329 1.02440682663095 2.13803834368747 1.66765139761135 1.10125611088364 Max fold change below threshold 4 2.13803834368747 Max fold change at or above threshold -0.627934530146668 -0.550659288622433 1.48593810821576 -0.307344289446663 287.416667938232 75.7542454327849 0.263569423360878 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778561_at YOR219C.S1 Dipeptidyl aminopeptidase, Golgi integral membrane protein that cleaves on the carboxyl side of repeating -X-Ala- sequences, required for maturation of alpha factor, transcription is induced by a-factor 2.13744943259957 2642.57409667969 1398.94903564453 STE13 7323 // peptide pheromone maturation // inferred from direct assay /// 7323 // peptide pheromone maturation // inferred from mutant phenotype 5802 // Golgi trans face // inferred from direct assay 4177 // aminopeptidase activity // inferred from direct assay 1385.85412597656 2962.19311523438 2322.955078125 1412.0439453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR219C /GEN=STE13 /DB_XREF=GI:6324793 /SEG=NC_001147:-752214,755009 /DEF=dipeptidyl aminopeptidase /NOTE=Ste13p; go_component: Golgi trans face [goid GO:0005802] [evidence IDA] [pmid 8308064]; go_function: aminopeptidase activity [goid GO:0004177] [evidence IDA] [pmid 6339075]; go_process: peptide pheromone maturation [goid GO:0007323] [evidence IDA,IMP] [pmid 6339075] --- --- --- --- --- S0005745 // span:119-141 // numtm:1 S0005745 // STE13 SGDID:S0005745, Chr XV from 755009-752214, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017632 // cdna:Genscan chromosome:SGD1:XV:752214:754934:-1 // ensembl // 11 // --- /// GENEFINDER00000022658 // cdna:GeneFinder chromosome:SGD1:XV:752214:755009:-1 // ensembl // 11 // --- /// YOR219C // cdna:known chromosome:SGD1:XV:752214:755009:-1 gene:YOR219C // ensembl // 11 // --- --- No cerevisiae_gene 1.06312307224654 2.13744943259957 -1.09564808448857 1.67619018090241 1.01889796252364 Max fold change below threshold 4 2.13744943259957 Max fold change at or above threshold -0.830990135803867 1.23218012783876 0.395521948005054 -0.796711940039947 2020.76156616211 764.037276533208 0.378093729278655 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778408_at YIL015W.S1 Aspartyl protease secreted into the periplasmic space of mating type a cells, helps cells find mating partners, cleaves and inactivates alpha factor allowing cells to recover from alpha-factor-induced cell cycle arrest 2.13743982626844 13.5996732711792 31.5860900878906 BAR1 30163 // protein catabolism // traceable author statement 30287 // periplasmic space (sensu Fungi) // traceable author statement 4190 // aspartic-type endopeptidase activity // traceable author statement 25.9237289428711 15.0709447860718 12.1284017562866 37.2484512329102 0.000244141003349796 0.171387001872063 0.149657994508743 0.000244141003349796 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL015W /GEN=BAR1 /DB_XREF=GI:6322174 /SEG=NC_001141:+322340,324103 /DEF=extracellular protease synthesized in a-cells that cleaves and inactivates alpha factor /NOTE=Bar1p; go_component: periplasmic space (sensu Fungi) [goid GO:0030287] [evidence TAS] [pmid 9249020]; go_function: aspartic-type endopeptidase activity [goid GO:0004190] [evidence TAS] [pmid 9249020]; go_process: protein catabolism [goid GO:0030163] [evidence TAS] [pmid 9249020] --- --- --- --- --- S0001277 // span:7-26 // numtm:1 S0001277 // BAR1 SGDID:S0001277, Chr IX from 322340-324103, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019117 // cdna:GeneFinder chromosome:SGD1:IX:322340:324103:1 // ensembl // 11 // --- /// GENSCAN00000016464 // cdna:Genscan chromosome:SGD1:IX:322466:324103:1 // ensembl // 11 // --- /// YIL015W // cdna:known chromosome:SGD1:IX:322340:324103:1 gene:YIL015W // ensembl // 11 // --- --- No cerevisiae_gene 1.33200779899202 -1.72011305932387 1.17273538608689 -2.13743982626844 1.43684773571718 Max fold change below threshold 4 2.13743982626844 Max fold change at or above threshold 0.291401394253851 -0.65806166568239 -0.915492005094744 1.28215227652328 22.5928816795349 11.4304438105555 0.505931203141273 PPAPAP Called_P_>2EXP 2 0 PAAP 2 2 0 Yes No 1 < x = 2
1776157_at YKR099W.S1 Myb-related transcription factor involved in regulating basal and induced expression of genes of the purine and histidine biosynthesis pathways 2.13708588739081 369.095062255859 836.872406005859 BAS1 105 // histidine biosynthesis // inferred from direct assay /// 105 // histidine biosynthesis // inferred from mutant phenotype /// 6366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 6366 // transcription from RNA polymerase II promoter // inferred from sequence similarity /// 9113 // purine base biosynthesis // inferred from direct assay /// 9113 // purine base biosynthesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 3702 // RNA polymerase II transcription factor activity // inferred from direct assay /// 3702 // RNA polymerase II transcription factor activity // inferred from sequence similarity 781.051086425781 365.474822998047 372.715301513672 892.693725585938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR099W /GEN=BAS1 /DB_XREF=GI:6322952 /SEG=NC_001143:+635487,637922 /DEF=Transcription factor regulating basal and induced activity of histidine and adenine biosynthesis genes /NOTE=Bas1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9705508]; go_function: RNA polymerase II transcription factor activity [goid GO:0003702] [evidence IDA,ISS] [pmid 1495962]; go_process: histidine biosynthesis [goid GO:0000105] [evidence IDA,IMP] [pmid 1495962]; go_process: purine base biosynthesis [goid GO:0009113] [evidence IDA,IMP] [pmid 1495962]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IDA,ISS] [pmid 1495962] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 5.19999980926514 /// scop // a.4.1.Myb // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb // 6.99999986863986E-7 /// scop // a.4.1.Myb // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb // 1.99999994947575E-4 --- S0001807 // BAS1 SGDID:S0001807, Chr XI from 635489-637924, Verified ORF // sgd // 11 // --- /// GENSCAN00000018500 // cdna:Genscan chromosome:SGD1:XI:635489:637924:1 // ensembl // 11 // --- /// GENEFINDER00000023042 // cdna:GeneFinder chromosome:SGD1:XI:635489:637924:1 // ensembl // 11 // --- /// YKR099W // cdna:known chromosome:SGD1:XI:635489:637924:1 gene:YKR099W // ensembl // 11 // --- --- No cerevisiae_gene -1.57396193375291 -2.13708588739081 -1.39889751919957 -2.095570220095 1.14293897172725 Max fold change below threshold 4 2.13708588739081 Max fold change at or above threshold 0.650103291917863 -0.867117542869603 -0.840683393895049 1.05769764484679 602.983734130859 273.906246143758 0.454251467560011 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777319_at YHR153C.S1 Protein of unknown function, required for spore formation 2.13681094808384 27.5152072906494 20.1118803024292 SPO16 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype --- --- 17.1233577728271 32.6338043212891 22.3966102600098 23.1004028320313 0.0239257998764515 0.00195312988944352 0.00805663969367743 0.00585938012227416 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR153C /GEN=SPO16 /DB_XREF=GI:6321947 /SEG=NC_001140:-402087,402683 /DEF=Protein of unknown function, required for spore formation /NOTE=Spo16p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 2188099] --- --- --- --- --- --- S0001196 // SPO16 SGDID:S0001196, Chr VIII from 402684-402088, reverse complement, Verified ORF // sgd // 11 // --- /// YHR153C // cdna:known chromosome:SGD1:VIII:402088:402684:-1 gene:YHR153C // ensembl // 11 // --- --- No cerevisiae_gene 2.13681094808384 1.90580637011949 -2.0624183596627 1.3079566844974 1.34905800243741 Max fold change below threshold 4 2.13681094808384 Max fold change at or above threshold -1.03614139532347 1.36603631271823 -0.219447334710391 -0.110447582684361 23.8135437965393 6.4568272765741 0.271140966323225 PPPPPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1775927_at YDL107W.S1 Peripherally bound inner membrane protein of the mitochondrial matrix, required for export of C-terminal tail of Cox2p through the inner membrane 2.13649209349439 115.961845397949 258.373886108398 MSS2 6461 // protein complex assembly // inferred from direct assay /// 6461 // protein complex assembly // inferred from physical interaction /// 6461 // protein complex assembly // inferred from mutant phenotype /// 50821 // protein stabilization // inferred from mutant phenotype /// 50821 // protein stabilization // inferred from direct assay 5743 // mitochondrial inner membrane // inferred from direct assay 15450 // protein translocase activity // inferred from genetic interaction /// 15450 // protein translocase activity // inferred from mutant phenotype 245.500793457031 117.015335083008 114.908355712891 271.246978759766 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL107W /GEN=MSS2 /DB_XREF=GI:6320096 /SEG=NC_001136:+268921,269976 /DEF=cox1 pre-mRNA splicing factor /NOTE=Mss2p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 11604502]; go_function: protein translocase activity [goid GO:0015450] [evidence IGI,IMP] [pmid 11604502]; go_process: protein complex assembly [goid GO:0006461] [evidence IDA,IMP,IPI] [pmid 11604502]; go_process: protein stabilization [goid GO:0050821] [evidence IDA,IMP] [pmid 11604502] --- --- --- --- --- --- S0002265 // MSS2 SGDID:S0002265, Chr IV from 268921-269976, Verified ORF // sgd // 11 // --- /// GENSCAN00000025019 // cdna:Genscan chromosome:SGD1:IV:269050:269976:1 // ensembl // 11 // --- /// YDL107W // cdna:known chromosome:SGD1:IV:268921:269976:1 gene:YDL107W // ensembl // 11 // --- --- No cerevisiae_gene -1.13786441631401 -2.098022394098 1.74403964413263 -2.13649209349439 1.1048721062779 Max fold change below threshold 4 2.13649209349439 Max fold change at or above threshold 0.703694887173228 -0.846279778815121 -0.871697166018076 1.01428205765997 187.167865753174 82.8951989948133 0.442892259636762 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772052_at YLR321C.S1 Subunit of the RSC chromatin remodeling complex required for kinetochore function in chromosome segregation; essential gene required for cell cycle progression; phosphorylated in the G1 phase of the cell cycle; Snf5p paralog 2.13632483977801 159.483879089355 341.980651855469 SFH1 6338 // chromatin remodeling // inferred from sequence similarity /// 6338 // chromatin remodeling // inferred from direct assay 16586 // RSC complex // inferred from physical interaction 5515 // protein binding // inferred from direct assay /// 5515 // protein binding // traceable author statement 337.234405517578 161.110488891602 157.857269287109 346.726898193359 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR321C /GEN=SFH1 /DB_XREF=GI:6323354 /SEG=NC_001144:-776584,777864 /DEF=Involved in chromatin modeling, cell cycle progression /NOTE=Sfh1p; go_component: nucleosome remodeling complex [goid GO:0005679] [evidence IPI] [pmid 10025404]; go_function: protein binding [goid GO:0005515] [evidence IDA,TAS] [pmid 12697820]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 10025404]; go_process: chromatin remodeling [goid GO:0006338] [evidence ISS] [pmid 8980231] --- --- --- --- --- --- S0004313 // SFH1 SGDID:S0004313, Chr XII from 777864-776584, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024749 // cdna:GeneFinder chromosome:SGD1:XII:776584:777771:-1 // ensembl // 11 // --- /// YLR321C // cdna:known chromosome:SGD1:XII:776584:777864:-1 gene:YLR321C // ensembl // 11 // --- --- No cerevisiae_gene -1.19260078993028 -2.09318715272769 -1.16025607642352 -2.13632483977801 1.02814805524132 Max fold change below threshold 4 2.13632483977801 Max fold change at or above threshold 0.820359645703949 -0.849945317477736 -0.880797849920805 0.910383521694592 250.732265472412 105.444167686891 0.420544868799478 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778553_at SPCC1682.07.S1 --- 2.13587797402308 --- --- --- --- 7.41534948348999 10.9001712799072 15.8382816314697 10.7302923202515 0.0461426004767418 0.0805663987994194 0.0375977009534836 0.0561522990465164 P A P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1682.07 /GEN=ssl1 /DEF=transcription factor --- --- --- --- --- --- AB016221 // Schizosaccharomyces pombe mRNA for SSL1, partial cds. // gb // 11 // --- /// SPCC1682.07 // |ssl1||transcription factor TFIIH complex |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.67354906706046 1.46994707453453 1.44711591419651 2.13587797402308 1.44703797766269 Max fold change below threshold 4 2.13587797402308 Max fold change at or above threshold PAAPPM No 4 0 PAPM 1 2 1 No No 1 < x = 2
1774680_at SPAC22H10.08.S1 --- 2.13572204620831 --- --- --- --- 3.50473189353943 7.48513317108154 4.6279091835022 3.53423571586609 0.274170011281967 0.030273400247097 0.0676269978284836 0.0224609375 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22H10.08 /DEF=hypothetical protein --- --- --- --- --- --- SPAC22H10.08 // |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.42925776897561 2.13572204620831 -2.05487500028831 1.32047452532196 1.00841828226035 Max fold change below threshold 4 2.13572204620831 Max fold change at or above threshold APPAAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1771449_at YPR135W.S1 Chromatin-associated protein, required for sister chromatid cohesion; interacts with DNA polymerase alpha (Pol1p) and may link DNA synthesis to sister chromatid cohesion 2.13550810845042 76.5510482788086 171.227760314941 CTF4 1302 // replicative cell aging // inferred from mutant phenotype /// 6261 // DNA-dependent DNA replication // inferred from physical interaction /// 6261 // DNA-dependent DNA replication // inferred from mutant phenotype /// 6281 // DNA repair // inferred from mutant phenotype /// 6281 // DNA repair // inferred from genetic interaction /// 7064 // mitotic sister chromatid cohesion // inferred from mutant phenotype /// 7064 // mitotic sister chromatid cohesion // inferred from genetic interaction 228 // nuclear chromosome // inferred from direct assay /// 5634 // nucleus // inferred from physical interaction 3677 // DNA binding // inferred from sequence similarity 158.740875244141 78.7680892944336 74.3340072631836 183.714645385742 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR135W /GEN=CTF4 /DB_XREF=GI:6325393 /SEG=NC_001148:+799228,802011 /DEF=Chromatin-associated protein, required for sister chromatid cohesion; interacts with DNA polymerase alpha (Pol1p) and may link DNA synthesis to sister chromatid cohesion /NOTE=Ctf4p; go_component: nuclear chromosome [goid GO:0000228] [evidence IDA] [pmid 11287619]; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 1448101]; go_function: DNA binding [goid GO:0003677] [evidence ISS] [pmid 1341195]; go_process: DNA repair [goid GO:0006281] [evidence IGI,IMP] [pmid 1341195]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence IMP,IPI] [pmid 1448101]; go_process: mitotic sister chromatid cohesion [goid GO:0007064] [evidence IMP] [pmid 11287619]; go_process: replicative cell aging [goid GO:0001302] [evidence IMP] [pmid 12024027] --- --- --- --- scop // a.4.5.Plant O-methyltransferase, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Plant O-methyltransferase, N-terminal domain // 1.10000002384186 --- S0006339 // CTF4 SGDID:S0006339, Chr XVI from 799230-802013, Verified ORF // sgd // 10 // --- /// GENSCAN00000017285 // cdna:Genscan chromosome:SGD1:XVI:799446:802013:1 // ensembl // 10 // --- /// GENEFINDER00000020974 // cdna:GeneFinder chromosome:SGD1:XVI:799551:802013:1 // ensembl // 10 // --- /// YPR135W // cdna:known chromosome:SGD1:XVI:799230:802013:1 gene:YPR135W // ensembl // 10 // --- --- No cerevisiae_gene 1.35325603307123 -2.01529422214077 -1.21585528164224 -2.13550810845042 1.15732413030476 Max fold change below threshold 4 2.13550810845042 Max fold change at or above threshold 0.626444333583115 -0.811041581282695 -0.890742824519236 1.07534007221882 123.889404296875 55.6337875193529 0.449060093840133 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777230_at YHR028C.S1 Dipeptidyl aminopeptidase, synthesized as a glycosylated precursor; localizes to the vacuolar membrane; similar to Ste13p 2.13518779347006 1600.5693359375 1756.84619140625 DAP2 16485 // protein processing // inferred from sequence similarity 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay 16806 // dipeptidyl-peptidase and tripeptidyl-peptidase activity // inferred from direct assay 1714.33581542969 1537.48986816406 1663.64880371094 1799.35656738281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR028C /GEN=DAP2 /DB_XREF=GI:6321817 /SEG=NC_001140:-164970,167426 /DEF=Dipeptidyl aminopeptidase B (DPAP B) /NOTE=Dap2p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 2647766]; go_function: dipeptidyl-peptidase and tripeptidyl-peptidase activity [goid GO:0016806] [evidence IDA] [pmid 2647766]; go_process: protein processing [goid GO:0016485] [evidence ISS] [pmid 3305478] --- --- --- --- --- S0001070 // span:27-45 // numtm:1 S0001070 // DAP2 SGDID:S0001070, Chr VIII from 167426-164970, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000016576 // cdna:Genscan chromosome:SGD1:VIII:164970:167426:-1 // ensembl // 10 // --- /// GENEFINDER00000020269 // cdna:GeneFinder chromosome:SGD1:VIII:164970:167426:-1 // ensembl // 10 // --- /// YHR028C // cdna:known chromosome:SGD1:VIII:164970:167426:-1 gene:YHR028C // ensembl // 10 // --- --- No cerevisiae_gene -2.13518779347006 -1.11502251229584 1.25692768195363 -1.0304673748484 1.04959398922189 Max fold change below threshold 4 2.13518779347006 Max fold change at or above threshold 0.325261807973198 -1.28923097797423 -0.137478876936247 1.10144804693728 1678.70776367188 109.536536059433 0.065250509010479 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778792_at YPL047W.S1 Integral subunit of SAGA histone acetyltransferase complex, regulates transcription of a subset of SAGA-regulated genes, required for the Ubp8p association with SAGA and for H2B deubiquitylation 2.13502982593639 430.716110229492 1017.02072143555 SGF11 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 16578 // histone deubiquitination // inferred from mutant phenotype 124 // SAGA complex // inferred from direct assay /// 5634 // nucleus // inferred from direct assay --- 918.467834472656 430.189697265625 431.242523193359 1115.57360839844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL047W /GEN=CAM1 /DB_XREF=GI:6325210 /SEG=NC_001148:+465957,466256 /DEF=Probable 11kDa subunit of the SAGA histone acetyltransferase complex /NOTE=Ypl047wp --- --- --- --- --- --- S0005968 // SGF11 SGDID:S0005968, Chr XVI from 465959-466258, Uncharacterized ORF // sgd // 11 // --- /// YPL047W // cdna:known chromosome:SGD1:XVI:465959:466258:1 gene:YPL047W // ensembl // 11 // --- --- No cerevisiae_gene 2.13250561845465 -2.13502982593639 -1.41823542035229 -2.1298174114913 1.21460280537636 Max fold change below threshold 4 2.13502982593639 Max fold change at or above threshold 0.559296118000336 -0.844058879423084 -0.841032963629364 1.12579572505211 723.86841583252 347.936294168986 0.480662350447802 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776505_at SPAC222.11.S1 --- 2.13434525901794 --- --- --- --- 17.3086681365967 17.0380630493164 16.7455444335938 8.10959148406982 0.0676269978284836 0.00415039015933871 0.00195312988944352 0.0461426004767418 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC222.11 /DEF=coproporphyrinogen III oxidase (predicted) --- --- --- --- --- --- SPAC222.11 // |hem13||coproporphyrinogen III oxidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.54098454469117 -1.01588238560316 -1.54063790270006 -1.03362827080577 -2.13434525901794 Max fold change below threshold 4 2.13434525901794 Max fold change at or above threshold APPPPP No 2 0 APPP 1 3 0 No No 2 < x = 3
1773560_at YBL033C.S1 GTP cyclohydrolase II; catalyzes the first step of the riboflavin biosynthesis pathway 2.13418659840334 1943.84405517578 1293.79461669922 RIB1 9231 // riboflavin biosynthesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 19238 // cyclohydrolase activity // inferred from genetic interaction /// 19238 // cyclohydrolase activity // inferred from mutant phenotype 1227.62963867188 1723.64929199219 2164.03881835938 1359.95959472656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL033C /GEN=RIB1 /DB_XREF=GI:6319438 /SEG=NC_001134:-158621,159658 /DEF=First step in the riboflavin biosynthesis pathway /NOTE=Rib1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: cyclohydrolase activity [goid GO:0019238] [evidence IGI,IMP] [pmid 4555411]; go_process: vitamin B2 biosynthesis [goid GO:0009231] [evidence IMP] [pmid 5366000] --- --- --- --- --- --- S0000129 // RIB1 SGDID:S0000129, Chr II from 159696-158659, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021112 // cdna:Genscan chromosome:SGD1:II:158659:159696:-1 // ensembl // 11 // --- /// GENEFINDER00000022174 // cdna:GeneFinder chromosome:SGD1:II:158659:159696:-1 // ensembl // 11 // --- /// YBL033C // cdna:known chromosome:SGD1:II:158659:159696:-1 gene:YBL033C // ensembl // 11 // --- --- No cerevisiae_gene 2.13418659840334 1.40404665845062 1.08221917197438 1.76277824368966 1.10779306061546 Max fold change below threshold 4 2.13418659840334 Max fold change at or above threshold -0.932204695916514 0.249809690771446 1.29925753508209 -0.616862529937018 1618.8193359375 419.639269121059 0.259225510719536 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774887_at YOR327C.S1 Vesicle membrane receptor protein (v-SNARE) involved in the fusion between Golgi-derived secretory vesicles with the plasma membrane; member of the synaptobrevin/VAMP family of R-type v-SNARE proteins 2.13322611064199 2836.58264160156 1403.10809326172 SNC2 6893 // Golgi to plasma membrane transport // traceable author statement /// 6897 // endocytosis // traceable author statement /// 6906 // vesicle fusion // traceable author statement 30133 // transport vesicle // traceable author statement 5485 // v-SNARE activity // traceable author statement /// 5485 // v-SNARE activity // inferred from direct assay 1337.47998046875 2853.14721679688 2820.01806640625 1468.73620605469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR327C /GEN=SNC2 /DB_XREF=GI:6324903 /SEG=NC_001147:-930729,931076 /DEF=mediate the targeting and transport of secretory proteins /NOTE=Snc2p; go_component: transport vesicle [goid GO:0030133] [evidence TAS] [pmid 9195971]; go_function: v-SNARE activity [goid GO:0005485] [evidence TAS] [pmid 10047442]; go_process: Golgi to plasma membrane transport [goid GO:0006893] [evidence TAS] [pmid 10047442]; go_process: endocytosis [goid GO:0006897] [evidence TAS] [pmid 10047442]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 10047442] --- --- --- --- --- S0005854 // span:92-114 // numtm:1 S0005854 // SNC2 SGDID:S0005854, Chr XV from 931076-930729, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022882 // cdna:GeneFinder chromosome:SGD1:XV:930729:931076:-1 // ensembl // 11 // --- /// YOR327C // cdna:known chromosome:SGD1:XV:930729:931076:-1 gene:YOR327C // ensembl // 11 // --- --- No cerevisiae_gene -1.01415269942781 2.13322611064199 1.38445614146532 2.10845628165433 1.09813696466689 Max fold change below threshold 4 2.13322611064199 Max fold change at or above threshold -0.943222454380731 0.88407128138072 0.844130661481496 -0.784979488481485 2119.84536743164 829.460095366951 0.391283302126847 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772191_at SPAC8E11.10.S1 --- 2.13289785518376 --- --- --- --- 1.28088700771332 1.15306520462036 1.20662486553192 0.600538372993469 0.828612983226776 0.943848013877869 0.969726979732513 0.989257991313934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8E11.10 /GEN=sou1 /DEF=short chain dehydrogenase --- --- --- --- --- --- SPAC8E11.10 // |sou1||short chain dehydrogenase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.73086646588674 -1.11085392446218 -1.97836474638486 -1.06154534379553 -2.13289785518376 Max fold change below threshold 0 2.13289785518376 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778506_at SPAC57A7.06.S1 --- 2.13240410795835 --- --- --- --- 6.77358436584473 7.2717809677124 6.06889343261719 3.61328625679016 0.129638999700546 0.111571997404099 0.0107421996071935 0.107177734375 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC57A7.06 /DEF=ribonucleoprotein (RNP) complex (predicted) (PMID 12068309) --- --- --- --- --- --- SPAC57A7.06 // |||ribonucleoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.01826580001909 1.07354992201467 -2.13240410795835 -1.11611522612017 -1.87463264310035 Max fold change below threshold 4 2.13240410795835 Max fold change at or above threshold APAAPA No 4 0 AAPA 3 1 0 No No x = 1
1776309_at YFR026C.S1 Hypothetical protein 2.13224571795386 64.6396732330322 132.114372253418 --- --- --- --- 130.499084472656 68.0766983032227 61.2026481628418 133.72966003418 0.000244141003349796 0.00805663969367743 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR026C /GEN=HIS2 /DB_XREF=GI:14318549 /SEG=NC_001138:-205736,206245 /DEF=Hypothetical ORF /NOTE=Yfr026cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001922 // span:5-27 // numtm:1 S0001922 // YFR026C SGDID:S0001922, Chr VI from 206245-205736, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000023267 // cdna:Genscan chromosome:SGD1:VI:205736:206245:-1 // ensembl // 11 // --- /// YFR026C // cdna:known chromosome:SGD1:VI:205736:206245:-1 gene:YFR026C // ensembl // 11 // --- --- No cerevisiae_gene -1.50442679313223 -1.91694203340174 1.38032851175601 -2.13224571795386 1.02475554196091 Max fold change below threshold 4 2.13224571795386 Max fold change at or above threshold 0.821961889884506 -0.775345995864231 -0.951244021717641 0.904628127697366 98.3770227432251 39.0797458188051 0.397244648486746 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1772745_at SPAC57A7.04c.S1 --- 2.13219979848731 --- --- --- --- 18.3813285827637 39.1926651000977 27.7518825531006 22.0928058624268 0.0676269978284836 0.111571997404099 0.111571997404099 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC57A7.04c /GEN=pab1 /DEF=poly(A) binding --- --- --- --- --- --- M64603 // Schizosaccharomyces pombe poly(A)-binding protein mRNA, 5' cds. // gb // 10 // --- /// SPAC57A7.04c // |pabp||mRNA exprot shuttling factor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.6294618627088 2.13219979848731 1.46346508444959 1.50978654389127 1.20191561578108 Max fold change below threshold 4 2.13219979848731 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1769782_at YPL215W.S1 Protein required for assembly of ubiquinol cytochrome-c reductase complex (cytochrome bc1 complex); involved in cytochrome-c reductase assembly 2.13208207398178 361.231285095215 583.752410888672 CBP3 6461 // protein complex assembly // traceable author statement 5740 // mitochondrial membrane // traceable author statement --- 519.622619628906 243.716049194336 478.746520996094 647.882202148438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL215W /GEN=CBP3 /DB_XREF=GI:6325041 /SEG=NC_001148:+147415,148422 /DEF=Protein required for assembly of ubiquinol cytochrome-c reductase complex (cytochrome bc1 complex) /NOTE=Cbp3p; go_component: mitochondrial membrane [goid GO:0005740] [evidence TAS] [pmid 8811190]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 8811190]; go_process: protein complex assembly [goid GO:0006461] [evidence TAS] [pmid 8811190] --- --- --- --- --- --- S0006136 // CBP3 SGDID:S0006136, Chr XVI from 147415-148422, Verified ORF // sgd // 11 // --- /// GENSCAN00000017023 // cdna:Genscan chromosome:SGD1:XVI:147418:148422:1 // ensembl // 11 // --- /// GENEFINDER00000020808 // cdna:GeneFinder chromosome:SGD1:XVI:147418:148422:1 // ensembl // 11 // --- /// YPL215W // cdna:known chromosome:SGD1:XVI:147415:148422:1 gene:YPL215W // ensembl // 11 // --- --- No cerevisiae_gene 1.22039004653434 -2.13208207398178 1.55389495057084 -1.08538150532721 1.24683217718876 Max fold change below threshold 4 2.13208207398178 Max fold change at or above threshold 0.27940650740601 -1.35625716916818 0.037079731104715 1.03977093065746 472.491847991943 168.681724969549 0.357004519096858 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773018_at SPAC1687.16c.S1 --- 2.13155367080614 --- --- --- --- 10.0761108398438 15.2728090286255 11.6141700744629 4.7271203994751 0.398925989866257 0.303710997104645 0.274170011281967 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1687.16c /DEF=lathosterol oxidase (ISS) --- --- --- --- --- --- SPAC1687.16c // |||lathosterol oxidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.31530841452732 1.51574444459588 -1.70715793116831 1.15264413612217 -2.13155367080614 Max fold change below threshold 4 2.13155367080614 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773307_at YKL024C.S1 Uridylate kinase, catalyzes the seventh enzymatic step in the de novo biosynthesis of pyrimidines, converting uridine monophosphate (UMP) into uridine-5'-diphosphate (UDP) 2.13108042722793 434.264678955078 672.637756347656 URA6 6139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolism // inferred from direct assay /// 6207 // 'de novo' pyrimidine base biosynthesis // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4849 // uridine kinase activity // inferred from direct assay 640.06982421875 300.349914550781 568.179443359375 705.205688476563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL024C /GEN=URA6 /DB_XREF=GI:6322828 /SEG=NC_001143:-392169,392783 /DEF=Ura6p /NOTE=go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 8391780]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8391780]; go_function: uridine kinase activity [goid GO:0004849] [evidence IDA] [pmid 2549068]; go_process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism [goid GO:0006139] [evidence IDA] [pmid 2549068] --- --- --- --- --- --- S0001507 // URA6 SGDID:S0001507, Chr XI from 392783-392169, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018399 // cdna:Genscan chromosome:SGD1:XI:392169:392783:-1 // ensembl // 11 // --- /// GENEFINDER00000023185 // cdna:GeneFinder chromosome:SGD1:XI:392169:392783:-1 // ensembl // 11 // --- /// YKL024C // cdna:known chromosome:SGD1:XI:392169:392783:-1 gene:YKL024C // ensembl // 11 // --- --- No cerevisiae_gene 1.40000118242715 -2.13108042722793 -1.18328838932632 -1.12652759915832 1.10176368544997 Max fold change below threshold 4 2.13108042722793 Max fold change at or above threshold 0.487243594030368 -1.4237355397834 0.0828486385552463 0.853643307197788 553.451217651367 177.772694456367 0.321207522518002 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774827_at SPAC30D11.04c.S1 --- 2.13099483375859 --- --- --- --- 9.32694339752197 9.604079246521 7.24260759353638 5.11911630630493 0.0805663987994194 0.0461426004767418 0.303710997104645 0.366210997104645 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30D11.04c /GEN=nup124 /DEF=nucleoporin --- --- --- --- --- --- SPAC30D11.04c // |nup124||nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.13099483375859 1.02971346958883 -1.46233646013376 -1.2877880344982 -1.82198310009767 Max fold change below threshold 4 2.13099483375859 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1776385_at YNL039W.S1 Essential subunit of RNA polymerase III transcription factor (TFIIIB), which is involved in transcription of genes encoding tRNAs, 5S rRNA, U6 snRNA, and other small RNAs 2.13023244806045 261.844619750977 485.078659057617 BDP1 6384 // transcription initiation from RNA polymerase III promoter // traceable author statement 126 // transcription factor TFIIIB complex // traceable author statement 3709 // RNA polymerase III transcription factor activity // traceable author statement 477.950622558594 224.365478515625 299.323760986328 492.206695556641 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL039W /GEN=BDP1 /DB_XREF=GI:6324289 /SEG=NC_001146:+555046,556830 /DEF=RNA polymerase III Transcription factor TFIIIB (90 kDa subunit; also called TFIIIB90 or B'' or B''90 component) /NOTE=Bdp1p; go_component: transcription factor TFIIIB complex [goid GO:0000126] [evidence TAS] [pmid 9585500]; go_function: RNA polymerase III transcription factor activity [goid GO:0003709] [evidence TAS] [pmid 9585500]; go_process: transcription initiation from Pol III promoter [goid GO:0006384] [evidence TAS] [pmid 9585500] --- --- --- --- --- --- S0004984 // BDP1 SGDID:S0004984, Chr XIV from 555047-556831, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020707 // cdna:GeneFinder chromosome:SGD1:XIV:553391:556831:1 // ensembl // 11 // --- /// GENSCAN00000020004 // cdna:Genscan chromosome:SGD1:XIV:556160:556831:1 // ensembl // 11 // --- /// YNL039W // cdna:known chromosome:SGD1:XIV:555047:556831:1 gene:YNL039W // ensembl // 11 // --- --- No cerevisiae_gene -1.47233522738276 -2.13023244806045 1.10398617347038 -1.5967680647325 1.02982750168151 Max fold change below threshold 4 2.13023244806045 Max fold change at or above threshold 0.78803016883098 -1.12444651378847 -0.55912961426958 0.895545959227067 373.461639404297 132.595155981532 0.355043576076602 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773053_at YER154W.S1 Translocase of the mitochondrial inner membrane, mediates the insertion of both mitochondrial- and nuclear-encoded proteins from the matrix into the inner membrane, interacts with mitochondrial ribosomes; null is respiratory deficient 2.13009021022343 511.756652832031 743.036102294922 OXA1 45039 // mitochondrial inner membrane protein import // inferred from mutant phenotype /// 45039 // mitochondrial inner membrane protein import // inferred from physical interaction 5743 // mitochondrial inner membrane // inferred from direct assay 8565 // protein transporter activity // inferred from mutant phenotype /// 8565 // protein transporter activity // inferred from physical interaction 707.438659667969 332.116760253906 691.396545410156 778.633544921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER154W /GEN=OXA1 /DB_XREF=GI:6321002 /SEG=NC_001137:+475015,476223 /DEF=Translocase of the mitochondrial inner membrane, mediates the insertion of both mitochondrial- and nuclear-encoded proteins from the matrix into the inner membrane, interacts with mitochondrial ribosomes; null is respiratory deficient /NOTE=Oxa1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 9171337]; go_function: protein transporter activity [goid GO:0008565] [evidence IMP,IPI] [pmid 9482871]; go_process: mitochondrial inner membrane protein import [goid GO:0045039] [evidence IMP,IPI] [pmid 9482871] --- --- --- --- --- S0000956 // span:282-304 // numtm:1 S0000956 // OXA1 SGDID:S0000956, Chr V from 475015-476223, Verified ORF // sgd // 11 // --- /// GENSCAN00000016933 // cdna:Genscan chromosome:SGD1:V:475015:476223:1 // ensembl // 11 // --- /// GENEFINDER00000019682 // cdna:GeneFinder chromosome:SGD1:V:475015:476223:1 // ensembl // 11 // --- /// YER154W // cdna:known chromosome:SGD1:V:475015:476223:1 gene:YER154W // ensembl // 11 // --- --- No cerevisiae_gene -1.28978372732689 -2.13009021022343 1.28329316454823 -1.0232024796252 1.10063753836597 Max fold change below threshold 4 2.13009021022343 Max fold change at or above threshold 0.399271696498031 -1.47293143879346 0.319249463164274 0.754410279131152 627.396377563477 200.470714068977 0.319528006915683 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779156_x_at YMR143W.S1 Protein component of the small (40S) ribosomal subunit; identical to Rps16Bp and has similarity to E. coli S9 and rat S16 ribosomal proteins 2.12984285320199 2704.69873046875 4854.837890625 RPS16A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 5532.29541015625 2811.88403320313 2597.51342773438 4177.38037109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR143W /GEN=RPS16A /DB_XREF=GI:9755341 /SEG=NC_001145:+551927,552902 /DEF=Protein component of the small (40S) ribosomal subunit; identical to Rps16Bp and has similarity to E. coli S9 and rat S16 ribosomal proteins /NOTE=Rps16ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004751 // RPS16A SGDID:S0004751, Chr XIII from 551927-551950,552495-552902, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021873 // cdna:GeneFinder chromosome:SGD1:XIII:551927:552902:1 // ensembl // 11 // --- /// YMR143W // cdna:known chromosome:SGD1:XIII:551927:552902:1 gene:YMR143W // ensembl // 11 // --- --- No cerevisiae_gene -1.1711214552569 -1.96746926431891 -1.55596519487878 -2.12984285320199 -1.32434562302205 Max fold change below threshold 4 2.12984285320199 Max fold change at or above threshold 1.28686460588563 -0.710708564440736 -0.8681189375993 0.291962896154403 3779.76831054688 1361.8581874068 0.360302027932966 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780073_at YPR127W.S1 Hypothetical protein 2.12947508853323 3076.20849609375 2760.39074707031 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 2819.42553710938 3231.53955078125 2920.87744140625 2701.35595703125 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR127W /GEN=CTR1 /DB_XREF=GI:6325384 /SEG=NC_001148:+790077,791114 /DEF=Hypothetical ORF /NOTE=Ypr127wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006331 // YPR127W SGDID:S0006331, Chr XVI from 790079-791116, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020946 // cdna:GeneFinder chromosome:SGD1:XVI:790136:791116:1 // ensembl // 11 // --- /// GENSCAN00000017279 // cdna:Genscan chromosome:SGD1:XVI:790190:791116:1 // ensembl // 11 // --- /// YPR127W // cdna:known chromosome:SGD1:XVI:790079:791116:1 gene:YPR127W // ensembl // 11 // --- --- No cerevisiae_gene -2.12947508853323 1.14616949738435 1.18401043195111 1.03598318273051 -1.0437075239088 Max fold change below threshold 4 2.12947508853323 Max fold change at or above threshold -0.435034940205565 1.37822074000456 0.0113421196167926 -0.954527919415786 2918.29962158203 227.278490380418 0.0778804508966797 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776625_at SPBC19C2.12.S1 --- 2.12881992641364 --- --- --- --- 4.67046546936035 4.45228719711304 9.70843124389648 2.19392228126526 0.753906011581421 0.884033203125 0.633789002895355 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C2.12 /GEN=mrpl51 /DEF=mitochondrial ribosomal protein subunit YmL51 --- --- --- --- --- --- SPBC19C2.12 // |mrpl51||mitochondrial ribosomal protein subunit L51|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.33563259738611 -1.04900363848693 -1.32855661079491 2.07868601268689 -2.12881992641364 Max fold change below threshold 3 2.12881992641364 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774130_at YPL140C.S1 Mitogen-activated kinase kinase involved in protein kinase C signaling pathway that controls cell integrity; upon activation by Bck1p phosphorylates downstream target, Slt2p; functionally redundant with Mkk1p 2.12855260016766 268.05753326416 491.067718505859 MKK2 6468 // protein amino acid phosphorylation // inferred from sequence similarity /// 7165 // signal transduction // inferred from mutant phenotype 5622 // intracellular // traceable author statement 4708 // MAP kinase kinase activity // inferred from sequence similarity 438.767944335938 206.134414672852 329.980651855469 543.367492675781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL140C /GEN=MKK2 /DB_XREF=GI:6325117 /SEG=NC_001148:-287513,289033 /DEF=Member of MAP kinase pathway involving PKC1, BCK1, and SLT2. Shows functional redundancy with MKK1 /NOTE=Mkk2p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 10361272]; go_function: MAP kinase kinase activity [goid GO:0004708] [evidence ISS] [pmid 8386320]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence ISS] [pmid 8386320]; go_process: signal transduction [goid GO:0007165] [evidence IMP] [pmid 8386320] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 4.0E-61 /// hanks // 2.1.8 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DdMLCK // 6.0E-68 --- --- S0006061 // MKK2 SGDID:S0006061, Chr XVI from 289033-287513, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017081 // cdna:Genscan chromosome:SGD1:XVI:287513:289033:-1 // ensembl // 11 // --- /// GENEFINDER00000021017 // cdna:GeneFinder chromosome:SGD1:XVI:287513:289033:-1 // ensembl // 11 // --- /// YPL140C // cdna:known chromosome:SGD1:XVI:287513:289033:-1 gene:YPL140C // ensembl // 11 // --- --- No cerevisiae_gene -1.6977198497061 -2.12855260016766 1.23938184730804 -1.32967779131522 1.23839377896704 Max fold change below threshold 4 2.12855260016766 Max fold change at or above threshold 0.408967866235695 -1.19797625180071 -0.342493455877987 1.131501841443 379.56262588501 144.767653742279 0.381406502826063 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779124_at YKL042W.S1 Central plaque component of spindle pole body (SPB); involved in SPB duplication, may facilitate attachment of the SPB to the nuclear membrane 2.1283522188628 141.873069763184 291.365982055664 SPC42 7020 // microtubule nucleation // inferred from physical interaction /// 7103 // spindle pole body duplication in nuclear envelope // inferred from mutant phenotype 5821 // intermediate layer of spindle pole body // inferred from direct assay /// 5823 // central plaque of spindle pole body // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from physical interaction 271.486206054688 127.556991577148 156.189147949219 311.245758056641 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL042W /GEN=SPC42 /DB_XREF=GI:6322809 /SEG=NC_001143:+358120,359211 /DEF=involved in SPB duplication, may facilitate attachment of the SPB to the nuclear membrane /NOTE=Spc42p; go_component: central plaque of spindle pole body [goid GO:0005823] [evidence IDA] [pmid 9215630]; go_component: intermediate layer of spindle pole body [goid GO:0005821] [evidence IDA] [pmid 9215630]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9215630]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752]; go_process: spindle pole body duplication (sensu Saccharomyces) [goid GO:0007103] [evidence IMP] [pmid 9153752] --- --- --- --- --- --- S0001525 // SPC42 SGDID:S0001525, Chr XI from 358120-359211, Verified ORF // sgd // 11 // --- /// GENSCAN00000018386 // cdna:Genscan chromosome:SGD1:XI:358120:359211:1 // ensembl // 11 // --- /// GENEFINDER00000023064 // cdna:GeneFinder chromosome:SGD1:XI:358120:359211:1 // ensembl // 11 // --- /// YKL042W // cdna:known chromosome:SGD1:XI:358120:359211:1 gene:YKL042W // ensembl // 11 // --- --- No cerevisiae_gene 1.13997646148969 -2.1283522188628 -1.09726153933063 -1.73818866175616 1.1464514627824 Max fold change below threshold 4 2.1283522188628 Max fold change at or above threshold 0.619281663095775 -1.00525116946733 -0.682079266790349 1.0680487731619 216.619525909424 88.5972949222917 0.408999579102289 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771045_at YFL050C.S1 Probable Mg(2+) transporter; overexpression confers increased tolerance to Al(3+) and Ga(3+) ions 2.12828908592768 51.1946239471436 36.437668800354 ALR2 15674 // di-, tri-valent inorganic cation transport // inferred from mutant phenotype /// 15674 // di-, tri-valent inorganic cation transport // inferred from sequence similarity /// 15693 // magnesium ion transport // inferred from direct assay 5886 // plasma membrane // inferred from mutant phenotype 15082 // di-, tri-valent inorganic cation transporter activity // inferred from mutant phenotype /// 15082 // di-, tri-valent inorganic cation transporter activity // inferred from sequence similarity 28.4294948577881 45.0512657165527 57.3379821777344 44.4458427429199 0.00415039015933871 0.0461426004767418 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL050C /GEN=ALR2 /DB_XREF=GI:14318469 /SEG=NC_001138:-33272,35848 /DEF=Probable Mg(2+) transporter; overexpression confers increased tolerance to Al(3+) and Ga(3+) ions /NOTE=Alr2p; go_component: plasma membrane [goid GO:0005886] [evidence IMP] [pmid 9430719]; go_function: di-, tri-valent inorganic cation transporter activity [goid GO:0015082] [evidence IMP,ISS] [pmid 9430719]; go_process: di-, tri-valent inorganic cation transport [goid GO:0015674] [evidence IMP,ISS] [pmid 9430719]; go_process: magnesium ion transport [goid GO:0015693] [evidence IDA] [pmid 12167543] --- --- --- --- --- S0001844 // span:743-765,772-794 // numtm:2 S0001844 // ALR2 SGDID:S0001844, Chr VI from 35848-33272, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018520 // cdna:GeneFinder chromosome:SGD1:VI:33272:35848:-1 // ensembl // 11 // --- /// GENSCAN00000023199 // cdna:Genscan chromosome:SGD1:VI:33272:35848:-1 // ensembl // 11 // --- /// YFL050C // cdna:known chromosome:SGD1:VI:33272:35848:-1 gene:YFL050C // ensembl // 11 // --- --- No cerevisiae_gene 1.23151967398317 1.58466641570352 2.12828908592768 2.01684843380279 1.56337082193158 Max fold change below threshold 4 2.12828908592768 Max fold change at or above threshold -1.29807630989196 0.104199354688708 1.14075337997974 0.053123575223508 43.8161463737488 11.8534260264263 0.270526438480402 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1777699_at YDR419W.S1 DNA polymerase eta, involved in the predominantly error-free bypass replication of DNA lesions, catalyzes the efficient and accurate synthesis of DNA opposite cyclobutane pyrimidine dimers; homolog of human POLH and bacterial DinB proteins 2.12798372316238 110.60079574585 193.17073059082 RAD30 6260 // DNA replication // inferred from direct assay /// 6281 // DNA repair // inferred from direct assay /// 19985 // bypass DNA synthesis // inferred from genetic interaction 5657 // replication fork // inferred from direct assay 15999 // eta DNA polymerase activity // inferred from direct assay 187.838577270508 132.930908203125 88.2706832885742 198.502883911133 0.00805663969367743 0.014160200022161 0.00585938012227416 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR419W /GEN=RAD30 /DB_XREF=GI:6320627 /SEG=NC_001136:+1303162,1305060 /DEF=DNA polymerase eta, involved in the predominantly error-free bypass replication of DNA lesions; homolog of human XPV and bacterial DinB proteins /NOTE=Rad30p; go_component: replication fork [goid GO:0005657] [evidence IDA] [pmid 9974380]; go_function: eta DNA polymerase activity [goid GO:0015999] [evidence IDA] [pmid 9974380]; go_process: DNA repair [goid GO:0006281] [evidence IDA] [pmid 10725365]; go_process: DNA replication [goid GO:0006260] [evidence IDA] [pmid 9974380]; go_process: bypass DNA synthesis [goid GO:0019985] [evidence IGI] [pmid 12110599] --- --- --- --- --- --- S0002827 // RAD30 SGDID:S0002827, Chr IV from 1303164-1305062, Verified ORF // sgd // 10 // --- /// GENSCAN00000025431 // cdna:Genscan chromosome:SGD1:IV:1303164:1305062:1 // ensembl // 10 // --- /// YDR419W // cdna:known chromosome:SGD1:IV:1303164:1305062:1 gene:YDR419W // ensembl // 10 // --- --- No cerevisiae_gene 1.49322678961306 -1.41305419341212 -1.07937132977734 -2.12798372316238 1.05677378308327 Max fold change below threshold 4 2.12798372316238 Max fold change at or above threshold 0.70186409075083 -0.3700331219599 -1.2418816527397 0.910050683948772 151.885763168335 51.2247521649267 0.33725841775015 PPPPPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1779435_at YIR024C.S1 (putative) involved in cell cycle control 2.12757778682388 183.049018859863 223.578353881836 --- --- 5739 // mitochondrion // inferred from direct assay --- 194.766906738281 173.320571899414 192.777465820313 252.389801025391 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR024C /GEN=DAL81 /DB_XREF=GI:6322215 /SEG=NC_001141:-402838,403488 /DEF=(putative) involved in cell cycle control /NOTE=Yir024cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14576278]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001463 // span:44-63 // numtm:1 S0001463 // YIR024C SGDID:S0001463, Chr IX from 403488-402838, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000019093 // cdna:GeneFinder chromosome:SGD1:IX:402838:403488:-1 // ensembl // 11 // --- /// YIR024C // cdna:known chromosome:SGD1:IX:402838:403488:-1 gene:YIR024C // ensembl // 11 // --- GENSCAN00000016493 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.19991562020746 -1.12373796488113 2.12757778682388 -1.01031988313314 1.29585567308177 Max fold change below threshold 4 2.12757778682388 Max fold change at or above threshold -0.250506554307303 -0.879099740743634 -0.308817170794854 1.43842346584579 203.31368637085 34.1179880750098 0.167809598478175 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-BioB-5_at AFFX-BioB-5 --- 2.12739644182686 --- --- --- --- 283.829925537109 351.655609130859 135.932189941406 133.416564941406 0.000146580772707239 0.00025835755513981 0.000445901358034462 0.000224668445298448 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2032-2305 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --- --- --- --- --- --- J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioB gene biotin synthetase corresponding to nucleotides 2393-2682 of J04423 /LEN=1114 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-BioB-5 // E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2032-2305 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioB gene biotin synthetase /LEN=1114 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// AFFX-BioB-5 // --- // unknown // --- // --- /// AFFX-BioB-5 // --- // unknown // --- // --- /// AFFX-BioB-5 // --- // unknown // --- // --- /// AFFX-BioB-5 // --- // unknown // --- // --- /// AFFX-BioB-5 // --- // gb // --- // --- /// AFFX-BioB-5 // E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2032-2305 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-BioB-5 // --- // unknown // --- // --- /// AFFX-BioB-5 // --- // affx // --- // --- /// AFFX-BioB-5 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-BioB-5 // --- // affx // --- // --- /// AFFX-BioB-5 // --- // affx // --- // --- /// AFFX-BioB-5 // --- // affx // --- // --- /// AFFX-BioB-5 // --- // affx // --- // --- /// AFFX-BioB-5 // --- // affx // --- // --- /// AFFX-BioB-5 // --- // affx // --- // --- /// AFFX-BioB-5 // --- // affx // --- // --- /// AFFX-BioB-5 // --- // affx // --- // --- /// AFFX-BioB-5 // --- // affx // --- // --- /// AFFX-BioB-5 // --- // affx // --- // --- /// AFFX-BioB-5 // --- // affx // --- // --- --- AFFX_control No -1.53507247515431 1.2389659352001 -1.70535923923382 -2.08802584332272 -2.12739644182686 Max fold change below threshold 4 2.12739644182686 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771910_at YDR052C.S1 Regulatory subunit of Cdc7p-Dbf4p kinase complex, required for Cdc7p kinase activity and initiation of DNA replication; phosphorylates the Mcm2-7 family of proteins; cell cycle regulated 2.12732009701385 279.053970336914 576.328430175781 DBF4 6270 // DNA replication initiation // traceable author statement /// 6275 // regulation of DNA replication // traceable author statement /// 6468 // protein amino acid phosphorylation // traceable author statement 5654 // nucleoplasm // traceable author statement 4674 // protein serine/threonine kinase activity // traceable author statement 561.235900878906 294.284973144531 263.822967529297 591.420959472656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR052C /GEN=DBF4 /DB_XREF=GI:6320258 /SEG=NC_001136:-558507,560621 /DEF=Required for Cdc7 kinase activity /NOTE=Dbf4p; go_component: nucleoplasm [goid GO:0005654] [evidence TAS] [pmid 9914182]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence TAS] [pmid 9442876]; go_process: DNA replication initiation [goid GO:0006270] [evidence TAS] [pmid 9442876]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 9442876]; go_process: regulation of DNA replication [goid GO:0006275] [evidence TAS] [pmid 9442876] --- --- --- --- --- --- S0002459 // DBF4 SGDID:S0002459, Chr IV from 560622-558508, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023955 // cdna:GeneFinder chromosome:SGD1:IV:558508:560193:-1 // ensembl // 11 // --- /// GENSCAN00000025137 // cdna:Genscan chromosome:SGD1:IV:558508:560604:-1 // ensembl // 11 // --- /// YDR052C // cdna:known chromosome:SGD1:IV:558508:560622:-1 gene:YDR052C // ensembl // 11 // --- --- No cerevisiae_gene -1.7062770279611 -1.90711708750167 -1.33000723851227 -2.12732009701385 1.05378319267616 Max fold change below threshold 4 2.12732009701385 Max fold change at or above threshold 0.774072940191822 -0.773270298101951 -0.949838998625446 0.949036356535575 427.691200256348 172.522114762809 0.403380089792363 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778119_at YAR003W.S1 Subunit of the COMPASS (Set1C) complex, which methylates Rad6p ubiquitinated histone H3 on lysine 4 and is required in transcriptional silencing near telomeres; WD40 beta propeller superfamily member with similarity to mammalian Rbbp7 2.12684074727062 108.519828796387 225.649154663086 SWD1 723 // telomere maintenance // inferred from mutant phenotype /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 6355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 16571 // histone methylation // inferred from direct assay /// 16571 // histone methylation // inferred from mutant phenotype 48188 // COMPASS complex // inferred from physical interaction 42800 // histone lysine N-methyltransferase activity (H3-K4 specific) // inferred from mutant phenotype /// 42800 // histone lysine N-methyltransferase activity (H3-K4 specific) // inferred from direct assay 200.01188659668 94.0417785644531 122.99787902832 251.286422729492 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR003W /GEN=SWD1 /DB_XREF=GI:6319320 /SEG=NC_001133:+155009,156289 /DEF=Subunit of the COMPASS complex, which methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres /NOTE=Swd1p; go_component: COMPASS complex [goid GO:0048188] [evidence IPI] [pmid 11805083]; go_component: nuclear chromatin [goid GO:0000790] [evidence IMP] [pmid 11687631]; go_function: chromatin binding [goid GO:0003682] [evidence IMP] [pmid 11687631]; go_function: histone lysine N-methyltransferase activity (H3-K4 specific) [goid GO:0042800] [evidence IDA] [pmid 11742990]; go_function: transcriptional activator activity [goid GO:0016563] [evidence IMP] [pmid 11687631]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 11687631]; go_process: histone methylation [goid GO:0016571] [evidence IDA] [pmid 11742990] --- --- --- --- --- --- S0000064 // SWD1 SGDID:S0000064, Chr I from 155007-156287, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018199 // cdna:GeneFinder chromosome:SGD1:I:155007:156528:1 // ensembl // 10 // --- /// GENSCAN00000020381 // cdna:Genscan chromosome:SGD1:I:155007:156287:1 // ensembl // 11 // --- /// YAR003W // cdna:known chromosome:SGD1:I:155007:156287:1 gene:YAR003W // ensembl // 11 // --- --- No cerevisiae_gene 1.82380228103814 -2.12684074727062 1.68584981712284 -1.6261409398013 1.25635744457631 Max fold change below threshold 4 2.12684074727062 Max fold change at or above threshold 0.458786840141189 -1.01772507979616 -0.614271424008609 1.17320966366358 167.084491729736 71.7705740138713 0.429546592091636 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776057_at SPBC2D10.20.S1 --- 2.12675631631176 --- --- --- --- 0.442377030849457 0.613095939159393 0.90528416633606 0.497666001319885 0.985840022563934 0.99804699420929 0.805419981479645 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2D10.20 /GEN=ubc1 /DEF=ubiquitin conjugating enzyme --- --- --- --- --- --- SPBC2D10.20 // |ubc1||ubiquitin conjugating enzyme|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 2.12675631631176 1.38591268624892 1.0559802771679 2.04640861348005 1.12498155784504 Max fold change below threshold 0 2.12675631631176 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774436_at SPAC29A4.20.S1 --- 2.12624261472287 --- --- --- --- 3.20662569999695 2.03355383872986 2.18496799468994 2.17294597625732 0.366210997104645 0.334473013877869 0.557373046875 0.424072265625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29A4.20 /DEF=RNA polymerase II holoenzyme component (predicted) --- --- --- --- --- --- SPAC29A4.20 // |||histone acetyltransferase subunit of the elongator complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.03441792123655 -1.57685802997957 2.12624261472287 -1.46758474622507 -1.47570429041224 Max fold change below threshold 1 2.12624261472287 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777385_at SPBC31A8.01c.S1 --- 2.1262135944013 --- --- --- --- 8.54035949707031 14.1187782287598 18.1586284637451 5.29182910919189 0.149657994508743 0.0805663987994194 0.111571997404099 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31A8.01c /GEN=cwl1 /DEF=reticulon-like protein --- --- --- --- --- --- SPBC31A8.01c // |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.07208486445427 1.65318312813449 -1.10215058792254 2.1262135944013 -1.61387666170771 Max fold change below threshold 4 2.1262135944013 Max fold change at or above threshold APAAAP No 4 0 AAAP 3 1 0 No No x = 1
1779525_at YCL031C.S1 Essential protein involved in rRNA processing and ribosome biogenesis 2.12602235944809 203.281364440918 382.864288330078 RRP7 28 // ribosomal small subunit assembly and maintenance // traceable author statement /// 6365 // 35S primary transcript processing // traceable author statement 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 405.629760742188 215.769927978516 190.79280090332 360.098815917969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL031C /GEN=RRP7 /DB_XREF=GI:6319818 /SEG=NC_001135:-64675,65568 /DEF=involved in rRNA processing /NOTE=Rrp7p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: ribosomal small subunit assembly and maintenance [goid GO:0000028] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0000536 // RRP7 SGDID:S0000536, Chr III from 65568-64675, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022441 // cdna:Genscan chromosome:SGD1:III:64675:65568:-1 // ensembl // 11 // --- /// GENEFINDER00000023389 // cdna:GeneFinder chromosome:SGD1:III:64675:65568:-1 // ensembl // 11 // --- /// YCL031C // cdna:known chromosome:SGD1:III:64675:65568:-1 gene:YCL031C // ensembl // 11 // --- --- No cerevisiae_gene 1.32859287271221 -1.87991795030203 1.08220408020779 -2.12602235944809 -1.12644014034912 Max fold change below threshold 4 2.12602235944809 Max fold change at or above threshold 1.06358698314766 -0.730460162007479 -0.966477137642387 0.633350316502205 293.072826385498 105.827671963021 0.361096841587826 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-Scv2-r2-Ec-bioD-3_at AFFX-Scv2-r2-Ec-bioD-3 --- 2.12578489780461 --- --- --- --- 3925.00439453125 4674.49853515625 1846.37890625 2265.36889648438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5312-5559 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --- --- --- --- --- --- AFFX-Scv2-r2-Ec-bioD-3 // --- // affx // --- // --- --- AFFX_control No -1.62771935075162 1.19095370738165 -1.62390887179227 -2.12578489780461 -1.73261158508112 Max fold change below threshold 4 2.12578489780461 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773229_at YMR172W.S1 Transcription factor required for the transient induction of glycerol biosynthetic genes GPD1 and GPP2 in response to high osmolarity; targets Hog1p to osmostress responsive promoters; has similarity to Msn1p and Gcr1p 2.12509070423811 196.060623168945 433.385955810547 HOT1 6357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 6972 // hyperosmotic response // inferred from genetic interaction /// 6972 // hyperosmotic response // inferred from mutant phenotype 228 // nuclear chromosome // inferred from direct assay 3704 // specific RNA polymerase II transcription factor activity // traceable author statement 406.605865478516 200.78547668457 191.33576965332 460.166046142578 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR172W /GEN=HOT1 /DB_XREF=GI:6323824 /SEG=NC_001145:+605980,608139 /DEF=Transcription factor required for the transient induction of glycerol biosynthetic genes GPD1 and GPP2 in response to high osmolarity; targets Hog1p to osmostress responsive promoters; has similarity to Msn1p and Gcr1p /NOTE=Hot1p; go_component: nuclear chromosome [goid GO:0000228] [evidence IDA] [pmid 10409737]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence TAS] [pmid 10722658]; go_process: hyperosmotic response [goid GO:0006972] [evidence IGI,IMP] [pmid 10409737]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence TAS] [pmid 10722658] --- --- --- --- --- S0004783 // span:21-38 // numtm:1 S0004783 // HOT1 SGDID:S0004783, Chr XIII from 605980-608139, Verified ORF // sgd // 11 // --- /// GENSCAN00000018858 // cdna:Genscan chromosome:SGD1:XIII:605980:608139:1 // ensembl // 11 // --- /// GENEFINDER00000021822 // cdna:GeneFinder chromosome:SGD1:XIII:606091:608139:1 // ensembl // 11 // --- /// YMR172W // cdna:known chromosome:SGD1:XIII:605980:608139:1 gene:YMR172W // ensembl // 11 // --- YMR172C-A // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene -1.36955879739317 -2.02507607717706 1.24452858715033 -2.12509070423811 1.13172505664922 Max fold change below threshold 4 2.12509070423811 Max fold change at or above threshold 0.661943920944608 -0.820835090227871 -0.888913026188308 1.04780419547157 314.723289489746 138.807190581418 0.441045182282072 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771510_at YGR170W.S1 Phosphatidylserine decarboxylase of the Golgi and vacuolar membranes, converts phosphatidylserine to phosphatidylethanolamine 2.1250402290016 282.923461914063 618.769958496094 PSD2 6656 // phosphatidylcholine biosynthesis // inferred from direct assay 139 // Golgi membrane // traceable author statement /// 329 // vacuolar membrane (sensu Fungi) // traceable author statement 4609 // phosphatidylserine decarboxylase activity // traceable author statement 599.480346679688 283.743865966797 282.103057861328 638.0595703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR170W /GEN=PSD2 /DB_XREF=GI:6321609 /SEG=NC_001139:+837145,840561 /DEF=Phosphatidylserine decarboxylase of the Golgi and vacuolar membranes, converts phosphatidylserine to phosphatidylethanolamine /NOTE=Psd2p; go_component: Golgi membrane [goid GO:0000139] [evidence TAS] [pmid 9370338]; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence TAS] [pmid 9370338]; go_function: phosphatidylserine decarboxylase activity [goid GO:0004609] [evidence TAS] [pmid 11602607]; go_process: phosphatidylcholine biosynthesis [goid GO:0006656] [evidence IDA] [pmid 6427211] --- --- --- --- --- --- S0003402 // PSD2 SGDID:S0003402, Chr VII from 837147-840563, Verified ORF // sgd // 11 // --- /// GENSCAN00000019474 // cdna:Genscan chromosome:SGD1:VII:837147:840563:1 // ensembl // 11 // --- /// GENEFINDER00000021393 // cdna:GeneFinder chromosome:SGD1:VII:837147:840563:1 // ensembl // 11 // --- /// YGR170W // cdna:known chromosome:SGD1:VII:837147:840563:1 gene:YGR170W // ensembl // 11 // --- --- No cerevisiae_gene -1.20564220587212 -2.11275174050754 1.07969823718174 -2.1250402290016 1.06435444272108 Max fold change below threshold 4 2.1250402290016 Max fold change at or above threshold 0.764022868624854 -0.858960309647765 -0.867394570864386 0.962332011887297 450.846710205078 194.540821457519 0.43150103361967 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772521_at YLR342W.S1 Catalytic subunit of 1,3-beta-D-glucan synthase, functionally redundant with alternate catalytic subunit Gsc2p; binds to regulatory subunit Rho1p; involved in cell wall synthesis and maintenance; localizes to sites of cell wall remodeling 2.12488606145705 1952.91241455078 1534.28533935547 FKS1 6075 // beta-1,3 glucan biosynthesis // traceable author statement /// 6897 // endocytosis // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // traceable author statement 148 // 1,3-beta-glucan synthase complex // traceable author statement /// 30478 // actin cap // inferred from direct assay /// 30479 // actin cortical patch // inferred from direct assay 3843 // 1,3-beta-glucan synthase activity // inferred from direct assay 1529.38037109375 1940.99157714844 1964.83325195313 1539.19030761719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR342W /GEN=FKS1 /DB_XREF=GI:6323374 /SEG=NC_001144:+809997,815627 /DEF=Catalytic subunit of 1,3-beta-D-glucan synthase, functionally redundant with alternate catalytic subunit Gsc2p; binds to regulatory subunit Rho1p; involved in cell wall synthesis and maintenance; localizes to sites of cell wall remodeling /NOTE=Fks1p; go_component: 1,3-beta-glucan synthase complex [goid GO:0000148] [evidence TAS] [pmid 8602515]; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IDA] [pmid 10652251]; go_function: 1,3-beta-glucan synthase activity [goid GO:0003843] [evidence IDA] [pmid 7649185]; go_process: beta-1,3 glucan biosynthesis [goid GO:0006075] [evidence TAS] [pmid 8602515]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence TAS] [pmid 8602515] --- --- --- --- --- S0004334 // span:445-467,497-519,532-552,567-589,675-697,1357-1379,1440-1462,1472-1489,1561-1583,1598-1620,1641-1663,1673-1695,1800-1822 // numtm:13 S0004334 // FKS1 SGDID:S0004334, Chr XII from 809997-815627, Verified ORF // sgd // 11 // --- /// GENSCAN00000018080 // cdna:Genscan chromosome:SGD1:XII:809997:815627:1 // ensembl // 11 // --- /// GENEFINDER00000024792 // cdna:GeneFinder chromosome:SGD1:XII:809997:815627:1 // ensembl // 11 // --- /// YLR342W // cdna:known chromosome:SGD1:XII:809997:815627:1 gene:YLR342W // ensembl // 11 // --- --- No cerevisiae_gene 2.12488606145705 1.26913592840238 -1.51362231011604 1.28472503576593 1.00641432092948 Max fold change below threshold 4 2.12488606145705 Max fold change at or above threshold -0.88548030456104 0.815930199801746 0.914480665283747 -0.844930560524453 1743.59887695313 241.923512873129 0.138749523225136 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778370_at SPCC1919.12c.S1 --- 2.1234927946827 --- --- --- --- 11.2367458343506 6.53014993667603 12.0555515289307 5.29163360595703 0.00585938012227416 0.111571997404099 0.000732421991415322 0.030273400247097 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1919.12c /DEF=peptidase family M28 (predicted) --- --- --- --- --- --- SPCC1919.12c // |||peptidase family M28 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.85079514129798 -1.72074851930128 -1.85592235942835 1.07286857838121 -2.1234927946827 Max fold change below threshold 4 2.1234927946827 Max fold change at or above threshold PAAPPP No 3 0 PAPP 1 3 0 No No 2 < x = 3
1770686_at YIL042C.S1 Hypothetical protein 2.12330845258674 1088.51275634766 1486.26110839844 --- --- 5739 // mitochondrion // inferred from sequence similarity 16301 // kinase activity // inferred from sequence similarity 1424.84118652344 952.226440429688 1224.79907226563 1547.68103027344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL042C /GEN=CBR1 /DB_XREF=GI:6322147 /SEG=NC_001141:-275107,276291 /DEF=Hypothetical ORF /NOTE=Yil042cp; go_component: mitochondrion [goid GO:0005739] [evidence ISS] [pmid 10974565]; go_function: kinase activity [goid GO:0016301] [evidence ISS] [pmid 10974565]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001304 // YIL042C SGDID:S0001304, Chr IX from 276291-275107, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016445 // cdna:Genscan chromosome:SGD1:IX:275107:276255:-1 // ensembl // 11 // --- /// GENEFINDER00000019092 // cdna:GeneFinder chromosome:SGD1:IX:275107:276255:-1 // ensembl // 11 // --- /// YIL042C // cdna:known chromosome:SGD1:IX:275107:276291:-1 gene:YIL042C // ensembl // 11 // --- --- No cerevisiae_gene -2.12330845258674 -1.49632600611309 -1.10701891956128 -1.16332647434797 1.08621300739469 Max fold change below threshold 4 2.12330845258674 Max fold change at or above threshold 0.528544491949923 -1.28877227577162 -0.24066529571734 1.00089307953903 1287.38693237305 260.061841990426 0.202007520389423 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769905_at YJR151C.S1 Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth 2.1232793360277 21.8905849456787 21.2721562385559 DAN4 --- 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 28.9226322174072 21.8815040588379 21.8996658325195 13.6216802597046 0.030273400247097 0.000732421991415322 0.00805663969367743 0.014160200022161 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR151C /GEN=DAN4 /DB_XREF=GI:6322611 /SEG=NC_001142:-712170,715655 /DEF=Delayed Anaerobic Gene /NOTE=Dan4p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003912 // span:7-29 // numtm:1 S0003912 // DAN4 SGDID:S0003912, Chr X from 715655-712170, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024254 // cdna:Genscan chromosome:SGD1:X:712170:715655:-1 // ensembl // 11 // --- /// GENEFINDER00000024283 // cdna:GeneFinder chromosome:SGD1:X:712170:715655:-1 // ensembl // 11 // --- /// YJR151C // cdna:known chromosome:SGD1:X:712170:715655:-1 gene:YJR151C // ensembl // 11 // --- --- No cerevisiae_gene -1.18091386435843 -1.32178446872922 -1.84108610050498 -1.32068828988518 -2.1232793360277 Max fold change below threshold 4 2.1232793360277 Max fold change at or above threshold 1.17332755163237 0.0479692570085034 0.0508719882466561 -1.27216879688753 21.5813705921173 6.2567878978692 0.289916151115746 PPPPPP Called_P_>2EXP 3 0 PPPP 0 4 0 Yes Yes 3 < x
1778850_at YBL085W.S1 Protein implicated in polar growth, functionally redundant with Boi2p; interacts with bud-emergence protein Bem1p; contains an SH3 (src homology 3) domain and a PH (pleckstrin homology) domain 2.12324543308253 402.930145263672 867.020751953125 BOI1 7266 // Rho protein signal transduction // inferred from physical interaction /// 7266 // Rho protein signal transduction // inferred from genetic interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from genetic interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction 5933 // bud // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 30427 // site of polarized growth // inferred from direct assay 5543 // phospholipid binding // inferred from direct assay 805.218994140625 379.239715576172 426.620574951172 928.822509765625 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL085W /GEN=BOI1 /DB_XREF=GI:6319386 /SEG=NC_001134:+63873,66815 /DEF=Protein implicated in polar growth, functionally redundant with Boi2p; interacts with bud-emergence protein Bem1p; contains an SH3 (src homology 3) domain and a PH (pleckstrin homology) domain /NOTE=Boi1p; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 12097146]; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 12097146]; go_component: site of polarized growth (sensu Saccharomyces) [goid GO:0000134] [evidence IDA] [pmid 12097146]; go_function: phospholipid binding [goid GO:0005543] [evidence IDA] [pmid 12097146]; go_process: Rho protein signal transduction [goid GO:0007266] [evidence IGI,IPI] [pmid 10639324]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IGI,IMP,IPI] [pmid 10639324] --- --- --- --- --- --- S0000181 // BOI1 SGDID:S0000181, Chr II from 63873-66815, Verified ORF // sgd // 11 // --- /// GENSCAN00000021073 // cdna:Genscan chromosome:SGD1:II:63873:66815:1 // ensembl // 11 // --- /// GENEFINDER00000022298 // cdna:GeneFinder chromosome:SGD1:II:63954:66815:1 // ensembl // 11 // --- /// YBL085W // cdna:known chromosome:SGD1:II:63873:66815:1 gene:YBL085W // ensembl // 11 // --- --- No cerevisiae_gene -1.56174054645438 -2.12324543308253 1.08982674368295 -1.88743591242121 1.15350298058594 Max fold change below threshold 4 2.12324543308253 Max fold change at or above threshold 0.62283092255335 -0.935601535061824 -0.762260077307025 1.0750306898155 634.975448608398 273.338299958355 0.430470659231627 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772972_at YMR219W.S1 Protein localized to the nuclear periphery, involved in telomeric silencing; interacts with PAD4-domain of Sir4p 2.12304881482171 658.110778808594 602.925720214844 ESC1 6348 // chromatin silencing at telomere // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 601.78955078125 610.503173828125 705.718383789063 604.061889648438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR219W /GEN=ESC1 /DB_XREF=GI:6323875 /SEG=NC_001145:+707132,712108 /DEF=Protein localizesd to the nuclear periphery, involved in telomeric silencing; interacts with PAD4-domain of Sir4p /NOTE=Esc1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12417731]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 12417731] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 7.90000009536743 --- S0004832 // ESC1 SGDID:S0004832, Chr XIII from 707132-712108, Verified ORF // sgd // 11 // --- /// GENSCAN00000018900 // cdna:Genscan chromosome:SGD1:XIII:707246:712108:1 // ensembl // 11 // --- /// GENEFINDER00000021790 // cdna:GeneFinder chromosome:SGD1:XIII:707246:712108:1 // ensembl // 11 // --- /// YMR219W // cdna:known chromosome:SGD1:XIII:707132:712108:1 gene:YMR219W // ensembl // 11 // --- --- No cerevisiae_gene -2.12304881482171 1.01447951868816 1.59864265922359 1.17269963041547 1.0037759692973 Max fold change below threshold 4 2.12304881482171 Max fold change at or above threshold -0.571498423486107 -0.398158799549022 1.49595213443711 -0.526294911401984 630.518249511719 50.2690778309157 0.0797266024731952 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777253_at YOR230W.S1 Transcriptional repressor involved in regulation of meiosis and silencing; contains WD repeats 2.12181998018347 3831.58764648438 1823.50341796875 WTM1 40020 // regulation of meiosis // inferred from genetic interaction 5634 // nucleus // inferred from direct assay 3714 // transcription corepressor activity // inferred from direct assay 1839.01330566406 3761.1201171875 3902.05517578125 1807.99353027344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR230W /GEN=WTM1 /DB_XREF=GI:6324804 /SEG=NC_001147:+770800,772113 /DEF=WD repeat containing transcriptional modulator 1 /NOTE=Wtm1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: transcription corepressor activity [goid GO:0003714] [evidence IDA] [pmid 9234739]; go_process: regulation of meiosis [goid GO:0040020] [evidence IGI] [pmid 9234739] --- --- --- --- --- --- S0005756 // WTM1 SGDID:S0005756, Chr XV from 770800-772113, Verified ORF // sgd // 11 // --- /// GENSCAN00000017651 // cdna:Genscan chromosome:SGD1:XV:770800:772113:1 // ensembl // 11 // --- /// GENEFINDER00000022599 // cdna:GeneFinder chromosome:SGD1:XV:770800:772113:1 // ensembl // 11 // --- /// YOR230W // cdna:known chromosome:SGD1:XV:770800:772113:1 gene:YOR230W // ensembl // 11 // --- --- No cerevisiae_gene 1.20732055478597 2.04518374369748 -1.0094490296216 2.12181998018347 -1.01715701680964 Max fold change below threshold 4 2.12181998018347 Max fold change at or above threshold -0.851548797241368 0.804206776063393 0.925612104498644 -0.878270083320669 2827.54553222656 1160.86386330988 0.410555320888416 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778670_at SPAC29A4.11.S1 --- 2.12160345479281 --- --- --- --- 10.5399265289307 6.00605821609497 11.9087553024292 5.0935583114624 0.0375977009534836 0.533936023712158 0.0239257998764515 0.149657994508743 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29A4.11 /GEN=rga3 /DEF=GTPase activating protein --- --- --- --- --- --- SPAC29A4.11 // |rga3||GTPase activating protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.88696622403203 -1.75488251190871 -2.12160345479281 1.12987080789807 -2.0692659010523 Max fold change below threshold 4 2.12160345479281 Max fold change at or above threshold PAAAPA No 4 0 PAPA 2 2 0 No No 1 < x = 2
1780076_at YMR260C.S1 Translation initiation factor eIF1A, essential protein that forms a complex with Sui1p (eIF1) and the 40S ribosomal subunit and scans for the start codon; C-terminus associates with Fun12p (eIF5B); N terminus interacts with eIF2 and eIF3 2.12159128802668 881.8740234375 1585.84259033203 TIF11 6413 // translational initiation // traceable author statement 5840 // ribosome // traceable author statement 3743 // translation initiation factor activity // traceable author statement 1604.9404296875 756.479553222656 1007.26849365234 1566.74475097656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR260C /GEN=TIF11 /DB_XREF=GI:6323916 /SEG=NC_001145:-789377,789838 /DEF=Translation initiation factor eIF1A /NOTE=Tif11p; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 9841679]; go_function: translation initiation factor activity [goid GO:0003743] [evidence TAS] [pmid 9841679]; go_process: translational initiation [goid GO:0006413] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0004873 // TIF11 SGDID:S0004873, Chr XIII from 789838-789377, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018932 // cdna:Genscan chromosome:SGD1:XIII:789377:789838:-1 // ensembl // 11 // --- /// GENEFINDER00000021830 // cdna:GeneFinder chromosome:SGD1:XIII:789377:789838:-1 // ensembl // 11 // --- /// YMR260C // cdna:known chromosome:SGD1:XIII:789377:789838:-1 gene:YMR260C // ensembl // 11 // --- --- No cerevisiae_gene 1.5886172091911 -2.12159128802668 -1.18555028110181 -1.59335910911698 -1.02437900537859 Max fold change below threshold 4 2.12159128802668 Max fold change at or above threshold 0.8847428372343 -1.13817779676471 -0.540240830610463 0.793675790140876 1233.85830688477 419.423709563713 0.339928585983807 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775673_at YIL124W.S1 NADPH-dependent 1-acyl dihydroxyacetone phosphate reductase found in lipid particles and ER; involved in phosphatidic acid biosynthesis and required for spore germination; capable of metabolizing mammalian steroid hormones 2.12080745781736 1679.29583740234 2666.72900390625 AYR1 6654 // phosphatidic acid biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 5811 // lipid particle // inferred from direct assay 140 // acylglycerone-phosphate reductase activity // inferred from mutant phenotype 2740.15209960938 1382.2587890625 1976.33288574219 2593.30590820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL124W /GEN=AYR1 /DB_XREF=GI:6322067 /SEG=NC_001141:+126204,127097 /DEF=NADPH-dependent 1-acyl dihydroxyacetone phosphate reductase found in lipid particles and ER; involved in phosphatidic acid biosynthesis and required for spore germination; capable of metabolizing mammalian steroid hormones /NOTE=Ayr1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 10617610]; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 10617610]; go_function: acylglycerone-phosphate reductase activity [goid GO:0000140] [evidence IMP] [pmid 10617610]; go_process: phosphatidic acid biosynthesis [goid GO:0006654] [evidence IMP] [pmid 10617610] --- --- --- --- --- --- S0001386 // AYR1 SGDID:S0001386, Chr IX from 126204-127097, Verified ORF // sgd // 11 // --- /// GENSCAN00000016382 // cdna:Genscan chromosome:SGD1:IX:126204:127097:1 // ensembl // 11 // --- /// GENEFINDER00000019027 // cdna:GeneFinder chromosome:SGD1:IX:126204:127097:1 // ensembl // 11 // --- /// YIL124W // cdna:known chromosome:SGD1:IX:126204:127097:1 gene:YIL124W // ensembl // 11 // --- --- No cerevisiae_gene -2.12080745781736 -1.98237270856339 1.26013218679142 -1.3864830764987 -1.056625094225 Max fold change below threshold 4 2.12080745781736 Max fold change at or above threshold 0.91116596067409 -1.27042388166767 -0.315985116229753 0.675243037223331 2173.0124206543 622.432908419343 0.286437805188397 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780159_at SPAC26A3.11.S1 --- 2.12057316799057 --- --- --- --- 12.0742893218994 9.97459983825684 6.7004451751709 5.69388008117676 0.111571997404099 0.274170011281967 0.111571997404099 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26A3.11 /DEF=amidohydrolase (predicted) --- --- --- --- --- --- SPAC26A3.11 // |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.09572236798828 -1.21050363099173 -1.72237440922154 -1.80201300156022 -2.12057316799057 Max fold change below threshold 4 2.12057316799057 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773032_at SPBC15C4.06c.S1 --- 2.11993596817031 --- --- --- --- 0.407120764255524 0.863069951534271 0.650011241436005 0.40299254655838 0.850341975688934 0.904784977436066 0.850341975688934 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC15C4.06c /DEF=zinc finger protein --- --- --- --- --- --- SPBC15C4.06c // ||SPBC21H7.01c|zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.46503472092263 2.11993596817031 1.7306158261513 1.59660547558816 -1.01024390583002 Max fold change below threshold 0 2.11993596817031 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779955_at YPL100W.S1 Phosphatidylinositol 3,5-bisphosphate-binding protein required for maturation of pro-aminopeptidase I, predicted to fold as a seven-bladed beta-propeller; displays punctate cytoplasmic localization 2.11990622858068 1596.63983154297 2132.99304199219 ATG21 6624 // vacuolar protein processing or maturation // inferred from mutant phenotype /// 6914 // autophagy // inferred from genetic interaction /// 6914 // autophagy // inferred from mutant phenotype 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 35091 // phosphoinositide binding // inferred from direct assay 2165.232421875 1594.62573242188 1598.65393066406 2100.75366210938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL100W /GEN=ATG21 /DB_XREF=GI:6325157 /SEG=NC_001148:+361867,363357 /DEF=Phosphatidylinositol 3,5-bisphosphate-binding protein required for maturation of pro-aminopeptidase I, predicted to fold as a seven-bladed beta-propeller; displays punctate cytoplasmic localization /NOTE=Atg21p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 11852075]; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 11852075]; go_function: phosphoinositide binding [goid GO:0035091] [evidence IDA] [pmid 15103325]; go_process: vacuolar protein processing/maturation [goid GO:0006624] [evidence IMP] [pmid 11852075] --- --- --- --- --- --- S0006021 // ATG21 SGDID:S0006021, Chr XVI from 361869-363359, Verified ORF // sgd // 11 // --- /// GENSCAN00000017114 // cdna:Genscan chromosome:SGD1:XVI:361869:363359:1 // ensembl // 11 // --- /// YPL100W // cdna:known chromosome:SGD1:XVI:361869:363359:1 gene:YPL100W // ensembl // 11 // --- --- No cerevisiae_gene -2.11990622858068 -1.35783110597777 -1.05047739863052 -1.35440971954173 -1.03069315595094 Max fold change below threshold 4 2.11990622858068 Max fold change at or above threshold 0.966636574563264 -0.869381890028839 -0.856420516654857 0.759165832120433 1864.81643676758 310.784831665564 0.166657063686263 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772698_at SPBC2G2.11.S1 --- 2.11990081100882 --- --- --- --- 4.05683469772339 7.52896356582642 6.98651313781738 4.21618938446045 0.111571997404099 0.014160200022161 0.0239257998764515 0.06494140625 A P P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G2.11 /DEF=glycylpeptide N-tetradecanoyltransferase (predicted) --- --- --- --- --- --- SPBC2G2.11 // |||N-myristoyltransferase 1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.29045714408627 1.85587141868302 2.11990081100882 1.72215869227752 1.03928054717795 Max fold change below threshold 4 2.11990081100882 Max fold change at or above threshold APPPPM No 4 0 APPM 1 2 1 No No 1 < x = 2
1776502_at YER104W.S1 Protein with a role in regulation of Ty1 transposition 2.11985575790126 305.449066162109 186.482482910156 RTT105 335 // negative regulation of DNA transposition // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 167.057189941406 256.760986328125 354.137145996094 205.907775878906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER104W /GEN=RTT105 /DB_XREF=GI:6320951 /SEG=NC_001137:+366798,367424 /DEF=same phenotype as RTT101, 102, 103, 104 /NOTE=Rtt105p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: negative regulation of DNA transposition [goid GO:0000335] [evidence IMP] [pmid 11779788] --- --- --- --- --- --- S0000906 // RTT105 SGDID:S0000906, Chr V from 366798-367424, Verified ORF // sgd // 11 // --- /// GENSCAN00000016889 // cdna:Genscan chromosome:SGD1:V:366798:367424:1 // ensembl // 11 // --- /// YER104W // cdna:known chromosome:SGD1:V:366798:367424:1 gene:YER104W // ensembl // 11 // --- --- No cerevisiae_gene 1.31498767840735 1.53696459528729 1.66483934433417 2.11985575790126 1.23255859835261 Max fold change below threshold 4 2.11985575790126 Max fold change at or above threshold -0.975027743286535 0.133390188734291 1.33661107653252 -0.49497352198028 245.965774536133 80.929578812546 0.329027804641403 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772420_at YBR228W.S1 Subunit of a complex, with Slx4p, that hydrolyzes 5' branches from duplex DNA in response to stalled or converging replication forks; function overlaps with that of Sgs1p-Top3p 2.11979256615056 257.052833557129 312.216857910156 SLX1 6261 // DNA-dependent DNA replication // inferred from genetic interaction /// 6281 // DNA repair // inferred from genetic interaction 5634 // nucleus // inferred from curator 17108 // 5'-flap endonuclease activity // inferred from direct assay 288.61669921875 242.063491821289 272.042175292969 335.817016601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR228W /GEN=SLX1 /DB_XREF=GI:6319705 /SEG=NC_001134:+675270,676184 /DEF=Subunit of a complex, with Slx4p, that hydrolyzes 5' branches from duplex DNA in response to stalled or converging replication forks; function overlaps with that of Sgs1p-Top3p /NOTE=Slx1p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 12832395]; go_function: 5'-flap endonuclease activity [goid GO:0017108] [evidence IDA] [pmid 12832395]; go_process: DNA repair [goid GO:0006281] [evidence IGI] [pmid 11139495]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence IGI] [pmid 12832395] --- --- --- --- --- --- S0000432 // SLX1 SGDID:S0000432, Chr II from 675308-676222, Verified ORF // sgd // 11 // --- /// GENSCAN00000021320 // cdna:Genscan chromosome:SGD1:II:675308:676222:1 // ensembl // 11 // --- /// YBR228W // cdna:known chromosome:SGD1:II:675308:676222:1 gene:YBR228W // ensembl // 11 // --- --- No cerevisiae_gene -2.11979256615056 -1.19231816845735 1.47043963071426 -1.06092630272469 1.16353980040163 Max fold change below threshold 4 2.11979256615056 Max fold change at or above threshold 0.10161708100527 -1.08642287698311 -0.321365519105256 1.3061713150831 284.634845733643 39.1848835423734 0.137667204594627 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775709_at YJL127C.S1 Putative histone acetylase, required for transcriptional regulation at core promoters, functions at or near the TATA box 2.11886313911713 88.4970092773438 191.814506530762 SPT10 6338 // chromatin remodeling // traceable author statement /// 6358 // regulation of global transcription from RNA polymerase II promoter // traceable author statement 5634 // nucleus // traceable author statement 4402 // histone acetyltransferase activity // inferred from direct assay 172.615020751953 81.4658660888672 95.5281524658203 211.01399230957 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL127C /GEN=SPT10 /DB_XREF=GI:6322334 /SEG=NC_001142:-182217,184139 /DEF=Putative histone acetylase, required for transcriptional regulation at core promoters, functions at or near the TATA box /NOTE=Spt10p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 8264536]; go_function: histone acetyltransferase activity [goid GO:0004402] [evidence IDA] [pmid 12192040]; go_process: chromatin remodeling [goid GO:0006338] [evidence TAS] [pmid 8007957]; go_process: regulation of global transcription from Pol II promoter [goid GO:0006358] [evidence TAS] [pmid 8007957] --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 5.30000019073486 --- S0003663 // SPT10 SGDID:S0003663, Chr X from 184139-182217, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024040 // cdna:Genscan chromosome:SGD1:X:182217:184139:-1 // ensembl // 11 // --- /// GENEFINDER00000024424 // cdna:GeneFinder chromosome:SGD1:X:182217:184091:-1 // ensembl // 11 // --- /// YJL127C // cdna:known chromosome:SGD1:X:182217:184139:-1 gene:YJL127C // ensembl // 11 // --- --- No cerevisiae_gene -1.44095570695624 -2.11886313911713 1.37934459745319 -1.80695445579474 1.22245440396984 Max fold change below threshold 4 2.11886313911713 Max fold change at or above threshold 0.524022491210314 -0.94748988792414 -0.720468270893164 1.14393566760699 140.155757904053 61.9424994009904 0.441954724709881 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770584_at YOR125C.S1 Mitochondrial inner membrane protein directly involved in ubiquinone biosynthesis, essential for several other metabolic pathways including respiration and gluconeogenic gene activation 2.11850387512355 406.807243347168 575.025665283203 CAT5 6743 // ubiquinone metabolism // traceable author statement 5743 // mitochondrial inner membrane // traceable author statement --- 517.217224121094 244.142684936523 569.471801757813 632.834106445313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR125C /GEN=CAT5 /DB_XREF=GI:37362696 /SEG=NC_001147:-559030,559731 /DEF=may encode a protein involved in one or more monoxygenase or hydroxylase steps of ubiquinone biosynthesis /NOTE=Cat5p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence TAS] [pmid 9452453]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ubiquinone metabolism [goid GO:0006743] [evidence TAS] [pmid 9452453] --- --- --- --- --- --- S0005651 // CAT5 SGDID:S0005651, Chr XV from 559731-559030, reverse complement, Verified ORF // sgd // 11 // --- /// S81938 // COQ7 [Saccharomyces cerevisiae, mRNA, 891 nt]. // gb // 11 // --- /// GENSCAN00000017553 // cdna:Genscan chromosome:SGD1:XV:559030:559731:-1 // ensembl // 11 // --- /// GENEFINDER00000022657 // cdna:GeneFinder chromosome:SGD1:XV:559030:559848:-1 // ensembl // 11 // --- /// YOR125C // cdna:known chromosome:SGD1:XV:559030:559731:-1 gene:YOR125C // ensembl // 11 // --- --- No cerevisiae_gene -1.46561563353413 -2.11850387512355 1.42189264755011 1.10103023487958 1.22353641165119 Max fold change below threshold 4 2.11850387512355 Max fold change at or above threshold 0.153650225338307 -1.44166294570196 0.458923709273985 0.829089011089668 490.916454315186 171.172998594693 0.348680507834015 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770581_at SPBC336.10c.S1 --- 2.11844418543619 --- --- --- --- 30.4466247558594 18.6819229125977 27.6000175476074 21.6182804107666 0.00585938012227416 0.0375977009534836 0.00585938012227416 0.014160200022161 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC336.10c /GEN=tif512 /DEF=translation initiation factor --- --- --- --- --- --- SPBC336.10c // |tif512||translation initiation factor|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.26330111372591 -1.62973720094565 -2.11844418543619 -1.10313787675467 -1.40837403240898 Max fold change below threshold 4 2.11844418543619 Max fold change at or above threshold PPPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1777576_at YAL034W-A.S1 Essential component of the MIND kinetochore complex (Mtw1p Including Nnf1p-Nsl1p-Dsn1p) which joins kinetochore subunits contacting DNA to those contacting microtubules; critical to kinetochore assembly 2.11814753738101 51.1063385009766 110.711845397949 MTW1 7059 // chromosome segregation // inferred from direct assay 818 // MIND complex // inferred from direct assay /// 922 // spindle pole // inferred from direct assay --- 100.670944213867 47.5278244018555 54.6848526000977 120.752746582031 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL034W-A /GEN=MTW1 /DB_XREF=GI:6319283 /SEG=NC_001133:+79721,80590 /DEF=Essential component of the MIND kinetochore complex (Mtw1p Including Nnf1p-Nsl1p-Dsn1p) which joins kinetochore subunits contacting DNA to those contacting microtubules; critical to kinetochore assembly /NOTE=Mtw1p; go_component: MIND complex [goid GO:0000818] [evidence IDA] [pmid 14633972]; go_component: spindle pole [goid GO:0000922] [evidence IDA] [pmid 12455957]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromosome segregation [goid GO:0007059] [evidence IDA] [pmid 12455957] --- --- --- --- --- --- S0000032 // MTW1 SGDID:S0000032, Chr I from 79719-80588, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018234 // cdna:GeneFinder chromosome:SGD1:I:79719:80588:1 // ensembl // 11 // --- /// GENSCAN00000020348 // cdna:Genscan chromosome:SGD1:I:79719:80588:1 // ensembl // 11 // --- /// YAL034W-A // cdna:known chromosome:SGD1:I:79719:80588:1 gene:YAL034W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.52040258452694 -2.11814753738101 1.44405494082595 -1.84092924141277 1.19947962666866 Max fold change below threshold 4 2.11814753738101 Max fold change at or above threshold 0.556722156138428 -0.940402296054607 -0.738777665085885 1.12245780500206 80.9090919494629 35.4967950287406 0.438724427298139 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776314_at YDR124W.S1 Hypothetical protein 2.11775325075151 49.1631507873535 23.8200197219849 --- --- --- --- 26.1073265075684 55.288875579834 43.037425994873 21.5327129364014 0.0805663987994194 0.149657994508743 0.030273400247097 0.0239257998764515 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR124W /GEN=INO2 /DB_XREF=GI:6320329 /SEG=NC_001136:+700309,701283 /DEF=Hypothetical ORF /NOTE=Ydr124wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002531 // YDR124W SGDID:S0002531, Chr IV from 700310-701284, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025189 // cdna:Genscan chromosome:SGD1:IV:700322:701284:1 // ensembl // 11 // --- /// YDR124W // cdna:known chromosome:SGD1:IV:700310:701284:1 gene:YDR124W // ensembl // 11 // --- --- No cerevisiae_gene -1.030608437164 2.11775325075151 1.09549810860186 1.64848078114765 -1.21244947558064 Max fold change below threshold 4 2.11775325075151 Max fold change at or above threshold -0.666705484287964 1.20685133669645 0.420265714390824 -0.960411566799312 36.4915852546692 15.5754812159542 0.426823913163961 APAPPP Called_P_>2EXP 4 0 AAPP 2 2 0 Yes No 1 < x = 2
1773402_at SPAC26H5.12.S1 --- 2.11762046196574 --- --- --- --- 3.40321826934814 7.20672464370728 7.01405572891235 3.47640681266785 0.366210997104645 0.0461426004767418 0.0805663987994194 0.149657994508743 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26H5.12 /DEF=DNA-directed RNA polymerase (predicted) --- --- --- --- --- --- SPAC26H5.12 // |rpo41||DNA-directed RNA polymerase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.18568512607281 2.11762046196574 1.9449413806738 2.06100672180977 1.02150568594994 Max fold change below threshold 4 2.11762046196574 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1773738_at YKR028W.S1 Protein that forms a complex with the Sit4p protein phosphatase and is required for its function; member of a family of similar proteins including Sap4p, Sap155p, and Sap185p 2.11725362691739 499.527893066406 869.279479980469 SAP190 82 // G1/S transition of mitotic cell cycle // inferred from genetic interaction /// 82 // G1/S transition of mitotic cell cycle // inferred from physical interaction /// 82 // G1/S transition of mitotic cell cycle // inferred from mutant phenotype 5737 // cytoplasm // inferred from physical interaction 4722 // protein serine/threonine phosphatase activity // inferred from physical interaction 842.385681152344 483.175048828125 515.880737304688 896.173278808594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR028W /GEN=SAP190 /DB_XREF=GI:6322880 /SEG=NC_001143:+493900,497196 /DEF=Protein that forms a complex with the Sit4p protein phosphatase and is required for its function; member of a family of similar proteins including Sap4p, Sap155p, and Sap185p /NOTE=Sap190p; go_component: cytoplasm [goid GO:0005737] [evidence IPI] [pmid 8649382]; go_function: protein serine/threonine phosphatase activity [goid GO:0004722] [evidence IPI] [pmid 8649382]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IGI,IMP,IPI] [pmid 8649382] --- --- --- --- --- --- S0001736 // SAP190 SGDID:S0001736, Chr XI from 493900-497196, Verified ORF // sgd // 11 // --- /// GENSCAN00000018442 // cdna:Genscan chromosome:SGD1:XI:493900:497196:1 // ensembl // 11 // --- /// GENEFINDER00000022938 // cdna:GeneFinder chromosome:SGD1:XI:493900:497196:1 // ensembl // 11 // --- /// YKR028W // cdna:known chromosome:SGD1:XI:493900:497196:1 gene:YKR028W // ensembl // 11 // --- --- No cerevisiae_gene -2.11725362691739 -1.74343787659449 1.03676966959088 -1.63290780259317 1.06385150989588 Max fold change below threshold 4 2.11725362691739 Max fold change at or above threshold 0.734740054130014 -0.935870828191901 -0.783763751824908 0.984894525886794 684.403686523438 215.017534080088 0.314167702941976 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777772_at YPR024W.S1 Mitochondrial inner membrane protease of the AAA family, responsible for degradation of unfolded or misfolded mitochondrial gene products; mutation causes an elevated rate of mitochondrial turnover 2.11724702653714 1981.79791259766 1074.57360839844 YME1 7005 // mitochondrion organization and biogenesis // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5743 // mitochondrial inner membrane // traceable author statement 4176 // ATP-dependent peptidase activity // traceable author statement 1030.26208496094 1782.27648925781 2181.3193359375 1118.88513183594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR024W /GEN=YME1 /DB_XREF=GI:6325281 /SEG=NC_001148:+610476,612719 /DEF=Mitochondrial inner membrane protease of the AAA family, responsible for degradation of unfolded or misfolded mitochondrial gene products; mutation causes an elevated rate of mitochondrial turnover /NOTE=Yme1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence TAS] [pmid 9891785]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11914276]; go_function: ATP-dependent peptidase activity [goid GO:0004176] [evidence TAS] [pmid 9891785]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence TAS] [pmid 9891785] --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 2.29999995231628 /// scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 0.759999990463257 --- S0006228 // YME1 SGDID:S0006228, Chr XVI from 610478-612721, Verified ORF // sgd // 11 // --- /// GENSCAN00000017204 // cdna:Genscan chromosome:SGD1:XVI:610643:612721:1 // ensembl // 11 // --- /// GENEFINDER00000020795 // cdna:GeneFinder chromosome:SGD1:XVI:610643:612721:1 // ensembl // 11 // --- /// YPR024W // cdna:known chromosome:SGD1:XVI:610478:612721:1 gene:YPR024W // ensembl // 11 // --- --- No cerevisiae_gene -1.16610788896569 1.7299253415944 1.46669270170868 2.11724702653714 1.08601990519564 Max fold change below threshold 4 2.11724702653714 Max fold change at or above threshold -0.905764746508632 0.46221225427175 1.18810451572934 -0.744552023492463 1528.18576049805 549.727373974766 0.359725491615368 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779744_at SPAC20G8.07c.S1 --- 2.11692556095191 --- --- --- --- 10.5980663299561 16.6362953186035 17.8363647460938 9.39377021789551 0.00415039015933871 0.00195312988944352 0.017578125 0.00805663969367743 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20G8.07c /DEF=C-8 sterol isomerase (predicted) --- --- --- --- --- --- SPAC20G8.07c // |erg2||C-8 sterol isomerase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.11692556095191 1.56974817864463 1.25057901292536 1.68298293205414 -1.12820157233209 Max fold change below threshold 4 2.11692556095191 Max fold change at or above threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1776224_at YFR029W.S1 Component of the SPS plasma membrane amino acid sensor system (Ssy1p-Ptr3p-Ssy5p), which senses external amino acid concentration and transmits intracellular signals that result in regulation of expression of amino acid permease genes 2.11688289584959 400.819549560547 529.735626220703 PTR3 7606 // sensory perception of chemical stimulus // inferred from genetic interaction /// 7606 // sensory perception of chemical stimulus // inferred from mutant phenotype 19897 // extrinsic to plasma membrane // inferred from direct assay 16597 // amino acid binding // inferred from genetic interaction /// 16597 // amino acid binding // inferred from mutant phenotype 561.771545410156 399.970397949219 401.668701171875 497.69970703125 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR029W /GEN=PTR3 /DB_XREF=GI:14318552 /SEG=NC_001138:+210925,212961 /DEF=Component of the SPS plasma membrane amino acid sensor system (Ssy1p-Ptr3p-Ssy5p), which senses external amino acid concentration and transmits intracellular signals that result in regulation of expression of amino acid permease genes /NOTE=Ptr3p; go_component: extrinsic to plasma membrane [goid GO:0019897] [evidence IDA] [pmid 10409731]; go_function: amino acid binding [goid GO:0016597] [evidence IGI,IMP] [pmid 10409731]; go_process: sensory perception of chemical stimulus [goid GO:0007606] [evidence IGI,IMP] [pmid 10409731] --- --- --- --- scop // a.140.4.Recombination endonuclease VII, C-terminal and dimerizat // All alpha proteins; LEM/SAP HeH motif; Recombination endonuclease VII, C-terminal and dimerization domains; Recombination endonuclease VII, C-terminal and dimerization domains // 6.90000009536743 --- S0001925 // PTR3 SGDID:S0001925, Chr VI from 210925-212961, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018577 // cdna:GeneFinder chromosome:SGD1:VI:210925:212961:1 // ensembl // 11 // --- /// GENSCAN00000023270 // cdna:Genscan chromosome:SGD1:VI:210925:212961:1 // ensembl // 11 // --- /// YFR029W // cdna:known chromosome:SGD1:VI:210925:212961:1 gene:YFR029W // ensembl // 11 // --- --- No cerevisiae_gene -2.11688289584959 -1.40453280615402 -1.32214008782603 -1.39859427376636 -1.12873593750153 Max fold change below threshold 4 2.11688289584959 Max fold change at or above threshold 1.22306370544405 -0.827770523410314 -0.806244480890511 0.41095129885677 465.277587890625 78.8952832873881 0.169566051193367 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776342_at YKL181W.S1 5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, involved in nucleotide, histidine, and tryptophan biosynthesis; one of five related enzymes, which are active as heteromultimeric complexes 2.1158637029987 1893.25720214844 1069.52075195313 PRS1 105 // histidine biosynthesis // traceable author statement /// 162 // tryptophan biosynthesis // traceable author statement /// 6166 // purine ribonucleoside salvage // traceable author statement /// 6189 // 'de novo' IMP biosynthesis // traceable author statement /// 6207 // 'de novo' pyrimidine base biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 4749 // ribose-phosphate diphosphokinase activity // traceable author statement 1021.96325683594 1861.96118164063 1924.55322265625 1117.07824707031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL181W /GEN=PRS1 /DB_XREF=GI:6322667 /SEG=NC_001143:+107321,108604 /DEF=5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, involved in nucleotide, histidine, and tryptophan biosynthesis; one of a five related enzymes, which are active as heteromultimeric complexes /NOTE=Prs1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: ribose-phosphate diphosphokinase activity [goid GO:0004749] [evidence TAS] [pmid 10212224]; go_process: 'de novo' IMP biosynthesis [goid GO:0006189] [evidence TAS] [pmid 10212224]; go_process: 'de novo' pyrimidine base biosynthesis [goid GO:0006207] [evidence TAS] [pmid 10212224]; go_process: histidine biosynthesis [goid GO:0000105] [evidence TAS] [pmid 10212224]; go_process: purine ribonucleoside salvage [goid GO:0006166] [evidence TAS] [pmid 10212224]; go_process: tryptophan biosynthesis [goid GO:0000162] [evidence TAS] [pmid 10212224] --- --- --- --- --- --- S0001664 // PRS1 SGDID:S0001664, Chr XI from 107321-108604, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023140 // cdna:GeneFinder chromosome:SGD1:XI:107321:108604:1 // ensembl // 11 // --- /// GENSCAN00000018284 // cdna:Genscan chromosome:SGD1:XI:107618:108604:1 // ensembl // 11 // --- /// YKL181W // cdna:known chromosome:SGD1:XI:107321:108604:1 gene:YKL181W // ensembl // 11 // --- --- No cerevisiae_gene 2.1158637029987 1.82194532845082 1.40741583504769 1.88319218893915 1.09307085122498 Max fold change below threshold 4 2.1158637029987 Max fold change at or above threshold -0.961441849366504 0.796424814934697 0.927411403237905 -0.762394368806098 1481.38897705078 477.850761871412 0.322569405655185 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770735_at SPAC1327.01c.S1 --- 2.11508698401002 --- --- --- --- 17.0422229766846 33.6379508972168 36.045783996582 26.4419174194336 0.0805663987994194 0.00122069998178631 0.00415039015933871 0.00585938012227416 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1327.01c /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPAC1327.01c // ||SPAC1783.09c, SPAC18G6.16c|transcription factor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.0240396426068 1.97380065636019 1.27622013259492 2.11508698401002 1.55155330707788 Max fold change below threshold 4 2.11508698401002 Max fold change at or above threshold APPPPP No 2 0 APPP 1 3 0 No No 2 < x = 3
1769785_at YAL003W.S1 Translation elongation factor 1 beta; stimulates nucleotide exchange to regenerate EF-1 alpha-GTP for the next elongation cycle; part of the EF-1 complex, which facilitates binding of aminoacyl-tRNA to the ribosomal A site 2.11501182555909 7075.15454101563 3783.45581054688 EFB1 6414 // translational elongation // traceable author statement 5840 // ribosome // traceable author statement /// 5853 // eukaryotic translation elongation factor 1 complex // inferred from mutant phenotype /// 5853 // eukaryotic translation elongation factor 1 complex // inferred from sequence similarity 3746 // translation elongation factor activity // traceable author statement 4106.736328125 8685.7958984375 5464.51318359375 3460.17529296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL003W /GEN=EFB1 /DB_XREF=GI:6319315 /SEG=NC_001133:+142178,143164 /DEF=Translation elongation factor 1 beta; stimulates nucleotide exchange to regenerate EF-1 alpha-GTP for the next elongation cycle; part of the EF-1 complex, which facilitates binding of aminoacyl-tRNA to the ribosomal A site /NOTE=Efb1p; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 9841679]; go_function: translation elongation factor activity [goid GO:0003746] [evidence TAS] [pmid 9841679]; go_process: translational elongation [goid GO:0006414] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0000003 // EFB1 SGDID:S0000003, Chr I from 142176-142255,142622-143162, intron sequence removed, Verified ORF // sgd // 11 // --- /// YAL003W // cdna:known chromosome:SGD1:I:142176:143162:1 gene:YAL003W // ensembl // 11 // --- GENEFINDER00000018210 // ensembl // 8 // Cross Hyb Matching Probes /// GENSCAN00000020376 // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene 1.3117390253913 2.11501182555909 -1.24250079811354 1.33062187269487 -1.18685788447484 Max fold change below threshold 4 2.11501182555909 Max fold change at or above threshold -0.568570654688169 1.39996119328515 0.0151358774915151 -0.846526416088499 5429.30517578125 2326.12928006566 0.42843958936807 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776049_at YNL302C.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps19Ap and has similarity to rat S19 ribosomal protein /// Protein component of the small (40S) ribosomal subunit; nearly identical to Rps19Bp and has similarity to rat S19 ribosomal protein 2.11477784160771 1963.62969970703 3458.04528808594 RPS19B /// RPS19A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3915.39526367188 1851.44519042969 2075.81420898438 3000.6953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL302C /GEN=RPS19B /DB_XREF=GI:6324027 /SEG=NC_001146:-61957,62942 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps19Ap and has similarity to rat S19 ribosomal protein /NOTE=Rps19bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0005246 // RPS19B SGDID:S0005246, Chr XIV from 62942-62923,62371-61957, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000019799 // cdna:Genscan chromosome:SGD1:XIV:61957:62259:-1 // ensembl // 11 // --- /// GENEFINDER00000020409 // cdna:GeneFinder chromosome:SGD1:XIV:61957:62259:-1 // ensembl // 11 // --- /// YNL302C // cdna:known chromosome:SGD1:XIV:61957:62942:-1 gene:YNL302C // ensembl // 11 // --- --- No cerevisiae_gene 1.01683820360819 -2.11477784160771 -2.01255650231531 -1.88619735173098 -1.30482933317538 Max fold change below threshold 4 2.11477784160771 Max fold change at or above threshold 1.27520903019541 -0.909798478213 -0.672269481483876 0.306858929501464 2710.83749389648 944.596329898013 0.348451846348147 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776853_at YMR230W.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Ap and has similarity to rat ribosomal protein S10 /// Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Bp and has similarity to rat ribosomal protein S10 2.1144058521459 342.958358764648 677.530883789063 RPS10B /// RPS10A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 648.821838378906 306.857757568359 379.058959960938 706.239929199219 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR230W /GEN=RPS10B /DB_XREF=GI:6323886 /SEG=NC_001145:+732413,733140 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Ap and has similarity to rat ribosomal protein S10 /NOTE=Rps10bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004843 // RPS10B SGDID:S0004843, Chr XIII from 732413-732464,732875-733140, intron sequence removed, Verified ORF // sgd // 11 // --- /// YMR230W // cdna:known chromosome:SGD1:XIII:732413:733140:1 gene:YMR230W // ensembl // 11 // --- --- No cerevisiae_gene 1.91394125676827 -2.1144058521459 -1.36768265193848 -1.71166469312787 1.08849592819467 Max fold change below threshold 4 2.1144058521459 Max fold change at or above threshold 0.704143496556361 -1.03345658370284 -0.666585259747448 0.995898346893929 510.244621276855 196.802523604589 0.385702299246394 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772973_at YJL206C.S1 Hypothetical protein 2.11401907214728 231.963912963867 303.943542480469 --- --- --- --- 292.631225585938 236.155807495117 227.772018432617 315.255859375 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL206C /GEN=NUC1 /DB_XREF=GI:6322255 /SEG=NC_001142:-47659,49935 /DEF=Hypothetical ORF /NOTE=Yjl206cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003741 // YJL206C SGDID:S0003741, Chr X from 49935-47659, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000023984 // cdna:Genscan chromosome:SGD1:X:47659:49935:-1 // ensembl // 11 // --- /// GENEFINDER00000024415 // cdna:GeneFinder chromosome:SGD1:X:47659:49935:-1 // ensembl // 11 // --- /// YJL206C // cdna:known chromosome:SGD1:X:47659:49935:-1 gene:YJL206C // ensembl // 11 // --- --- No cerevisiae_gene -2.11401907214728 -1.23914473537555 1.48140962400432 -1.28475493873058 1.07731448940133 Max fold change below threshold 4 2.11401907214728 Max fold change at or above threshold 0.577807042514555 -0.744526951068266 -0.940827742583319 1.10754765113703 267.953727722168 42.7088907680593 0.159389052472308 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777069_at YMR166C.S1 Hypothetical protein 2.11393869057047 334.720458984375 542.373992919922 --- 6810 // transport // inferred from sequence similarity 5743 // mitochondrial inner membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity 515.627502441406 243.917907714844 425.523010253906 569.120483398438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR166C /GEN=SMP2 /DB_XREF=GI:6323818 /SEG=NC_001145:-593366,594472 /DEF=Hypothetical ORF /NOTE=Ymr166cp; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence ISS] [pmid 10930523]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 10930523]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 10930523] --- --- --- --- --- --- S0004776 // YMR166C SGDID:S0004776, Chr XIII from 594472-593366, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018852 // cdna:Genscan chromosome:SGD1:XIII:593366:594472:-1 // ensembl // 11 // --- /// YMR166C // cdna:known chromosome:SGD1:XIII:593366:594472:-1 gene:YMR166C // ensembl // 11 // --- --- No cerevisiae_gene -1.87896942319055 -2.11393869057047 1.49684548169215 -1.2117499877004 1.10374345957838 Max fold change below threshold 4 2.11393869057047 Max fold change at or above threshold 0.540372528628274 -1.36445199253724 -0.0913064754151476 0.915385939324116 438.547225952148 142.642848045819 0.325262228568704 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770478_at YGL095C.S1 Protein of the Sec1p/Munc-18 family, essential for vacuolar protein sorting; required for the function of Pep12p and the early endosome/late Golgi SNARE Tlg2p; essential for fusion of Golgi-derived vesicles with the prevacuolar compartment 2.11352003674569 407.570129394531 578.290252685547 VPS45 6461 // protein complex assembly // inferred from mutant phenotype /// 6896 // Golgi to vacuole transport // inferred from mutant phenotype /// 7033 // vacuole organization and biogenesis // inferred from mutant phenotype /// 18987 // osmoregulation // traceable author statement 139 // Golgi membrane // inferred from direct assay /// 5829 // cytosol // inferred from direct assay /// 19898 // extrinsic to membrane // inferred from direct assay 51082 // unfolded protein binding // inferred from mutant phenotype 552.426330566406 378.149291992188 436.990966796875 604.154174804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL095C /GEN=VPS45 /DB_XREF=GI:6321343 /SEG=NC_001139:-328875,330608 /DEF=Protein of the Sec1p family essential for vacuolar protein sorting; required for the function of both Pep12p and the early endosome/late Golgi SNARE Tlg2p . /NOTE=Vps45p; go_component: Golgi membrane [goid GO:0000139] [evidence IDA] [pmid 7720726]; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 9624182]; go_component: extrinsic to membrane [goid GO:0019898] [evidence IDA] [pmid 7720726]; go_function: chaperone activity [goid GO:0003754] [evidence IMP] [pmid 11432826]; go_process: Golgi to vacuole transport [goid GO:0006896] [evidence IMP] [pmid 7720726]; go_process: osmoregulation [goid GO:0018987] [evidence TAS] [pmid 10514566]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP] [pmid 11432826]; go_process: vacuole organization and biogenesis [goid GO:0007033] [evidence IMP] [pmid 9650782] --- --- --- --- --- --- S0003063 // VPS45 SGDID:S0003063, Chr VII from 330610-328877, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019280 // cdna:Genscan chromosome:SGD1:VII:328877:330610:-1 // ensembl // 11 // --- /// YGL095C // cdna:known chromosome:SGD1:VII:328877:330610:-1 gene:YGL095C // ensembl // 11 // --- --- No cerevisiae_gene -2.11352003674569 -1.4608683455576 -1.02059029914355 -1.26415961093125 1.09363754291951 Max fold change below threshold 4 2.11352003674569 Max fold change at or above threshold 0.574148557133634 -1.10765653199431 -0.539823678343934 1.07333165320461 492.930191040039 103.62499180246 0.21022244870784 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776143_at YIL126W.S1 ATPase component of the ATP-dependent RSC chromatin remodeling complex required for kinetochore function in chromosome segregation; required for expression of early meiotic genes; essential helicase-related protein homologous to Snf2p 2.11309421293121 819.068511962891 471.840637207031 STH1 6338 // chromatin remodeling // inferred from direct assay /// 7126 // meiosis // inferred from mutant phenotype 16586 // RSC complex // inferred from physical interaction 3678 // DNA helicase activity // inferred from sequence similarity /// 16887 // ATPase activity // inferred from direct assay 410.734191894531 770.216979980469 867.920043945313 532.947082519531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL126W /GEN=STH1 /DB_XREF=GI:6322065 /SEG=NC_001141:+117992,122071 /DEF=helicase related protein, snf2 homolog /NOTE=Sth1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 1549132]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 9799253]; go_function: DNA helicase activity [goid GO:0003678] [evidence ISS] [pmid 1549132]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 8980231]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 10320476] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 6.09999990463257 --- S0001388 // STH1 SGDID:S0001388, Chr IX from 117992-122071, Verified ORF // sgd // 11 // --- /// GENSCAN00000016380 // cdna:Genscan chromosome:SGD1:IX:117992:122071:1 // ensembl // 11 // --- /// GENEFINDER00000019131 // cdna:GeneFinder chromosome:SGD1:IX:117992:122071:1 // ensembl // 11 // --- /// YIL126W // cdna:known chromosome:SGD1:IX:117992:122071:1 gene:YIL126W // ensembl // 11 // --- --- No cerevisiae_gene 1.18617605638721 1.87522002107447 -1.10949292255005 2.11309421293121 1.29754739935647 Max fold change below threshold 4 2.11309421293121 Max fold change at or above threshold -1.11557581428668 0.592969048516863 1.05733083035937 -0.53472406458956 645.454574584961 210.402896588893 0.325976303947006 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776334_at SPBC28F2.03.S1 --- 2.11292252680196 --- --- --- --- 34.9136581420898 28.5743389129639 36.9488983154297 26.9951477050781 0.111571997404099 0.149657994508743 0.149657994508743 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC28F2.03 /GEN=ppi1 /DEF=cyclophilin --- --- --- --- --- --- SPBC28F2.03 // |ppi1|cyp2|cyclophilin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.96106120587915 -1.22185357458086 -2.11292252680196 1.05829352412907 -1.29333088018341 Max fold change below threshold 4 2.11292252680196 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778713_at YDR041W.S1 Mitochondrial ribosomal protein of the small subunit, has similarity to E. coli S10 ribosomal protein; essential for viability, unlike most other mitoribosomal proteins 2.11274907348603 2086.53643798828 1536.96850585938 RSM10 6412 // protein biosynthesis // inferred from direct assay 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // inferred from direct assay 1426.77819824219 2160.22900390625 2012.84387207031 1647.15881347656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR041W /GEN=RSM10 /DB_XREF=GI:6320246 /SEG=NC_001136:+539798,540409 /DEF=Mitochondrial ribosomal protein of the small subunit, has similarity to E. coli S10 ribosomal protein; essential for viability, unlike most other mitoribosomal proteins /NOTE=Rsm10p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 11278769]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 11278769]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 11278769] --- --- --- --- --- --- S0002448 // RSM10 SGDID:S0002448, Chr IV from 539799-540410, Verified ORF // sgd // 11 // --- /// GENSCAN00000025129 // cdna:Genscan chromosome:SGD1:IV:539799:540410:1 // ensembl // 11 // --- /// YDR041W // cdna:known chromosome:SGD1:IV:539799:540410:1 gene:YDR041W // ensembl // 11 // --- --- No cerevisiae_gene 1.48031954026666 1.51406084461319 2.11274907348603 1.41076158477202 1.15446031871379 Max fold change below threshold 4 2.11274907348603 Max fold change at or above threshold -1.14833322803274 1.03946473367712 0.599832125018303 -0.490963630662682 1811.75247192383 335.246132641443 0.185039699316904 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774675_at YJL026W.S1 Ribonucleotide-diphosphate reductase (RNR), small subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits 2.11227302653844 2559.38391113281 4616.89624023438 RNR2 6260 // DNA replication // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5971 // ribonucleoside-diphosphate reductase complex // inferred from direct assay 4748 // ribonucleoside-diphosphate reductase activity // inferred from expression pattern /// 4748 // ribonucleoside-diphosphate reductase activity // inferred from sequence similarity 5028.58154296875 2380.6494140625 2738.11840820313 4205.2109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL026W /GEN=RNR2 /DB_XREF=GI:6322434 /SEG=NC_001142:+392320,393519 /DEF=Ribonucleotide-diphosphate reductase (RNR), small subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits /NOTE=Rnr2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12732713]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12732713]; go_function: ribonucleoside-diphosphate reductase activity [goid GO:0004748] [evidence IEP,ISS] [pmid 3313004]; go_process: DNA replication [goid GO:0006260] [evidence TAS] [pmid 9759483] --- --- --- --- --- --- S0003563 // RNR2 SGDID:S0003563, Chr X from 392320-393519, Verified ORF // sgd // 11 // --- /// GENSCAN00000024117 // cdna:Genscan chromosome:SGD1:X:392320:393519:1 // ensembl // 11 // --- /// GENEFINDER00000024503 // cdna:GeneFinder chromosome:SGD1:X:392320:393519:1 // ensembl // 11 // --- /// YJL026W // cdna:known chromosome:SGD1:X:392320:393519:1 gene:YJL026W // ensembl // 11 // --- YJL026C-A // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene -1.1144337865612 -2.11227302653844 -1.39522563093322 -1.83650989230547 -1.19579769426697 Max fold change below threshold 4 2.11227302653844 Max fold change at or above threshold 1.15870875938112 -0.971320278031323 -0.683767840722947 0.49637935937315 3588.14007568359 1243.14367663408 0.346459070831353 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769685_at YDR518W.S1 Protein disulfide isomerase of the endoplasmic reticulum lumen, function overlaps with that of Pdi1p; may interact with nascent polypeptides in the ER 2.11192525827177 385.386093139648 814.749542236328 EUG1 6457 // protein folding // inferred from genetic interaction 5783 // endoplasmic reticulum // inferred from direct assay 3756 // protein disulfide isomerase activity // inferred from mutant phenotype /// 3756 // protein disulfide isomerase activity // traceable author statement 789.921081542969 374.028900146484 396.743286132813 839.578002929688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR518W /GEN=EUG1 /DB_XREF=GI:6320726 /SEG=NC_001136:+1478596,1480149 /DEF=Protein disulfide isomerase of the endoplasmic reticulum lumen, function overlaps with that of Pdi1p; may interact with nascent polypeptides in the ER /NOTE=Eug1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11914276]; go_function: protein disulfide isomerase activity [goid GO:0003756] [evidence IMP,TAS] [pmid 11157982]; go_process: protein folding [goid GO:0006457] [evidence IGI] [pmid 11157982] --- --- --- --- --- --- S0002926 // EUG1 SGDID:S0002926, Chr IV from 1478598-1480151, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023883 // cdna:GeneFinder chromosome:SGD1:IV:1478598:1480151:1 // ensembl // 11 // --- /// GENSCAN00000025504 // cdna:Genscan chromosome:SGD1:IV:1478598:1480151:1 // ensembl // 11 // --- /// YDR518W // cdna:known chromosome:SGD1:IV:1478598:1480151:1 gene:YDR518W // ensembl // 11 // --- --- No cerevisiae_gene 1.68550247808175 -2.11192525827177 -1.78342569194547 -1.99101310381983 1.0628631423404 Max fold change below threshold 4 2.11192525827177 Max fold change at or above threshold 0.762789314202325 -0.908175437142987 -0.816913951523899 0.962300074464561 600.067817687988 248.893449764063 0.414775534410475 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771189_at YKL121W.S1 Hypothetical protein 2.11177167908573 635.821838378906 1323.66534423828 --- --- --- --- 1268.107421875 600.494567871094 671.149108886719 1379.22326660156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL121W /GEN=SRP21 /DB_XREF=GI:6322728 /SEG=NC_001143:+213788,216346 /DEF=Hypothetical ORF /NOTE=Ykl121wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001604 // YKL121W SGDID:S0001604, Chr XI from 213788-216346, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018326 // cdna:Genscan chromosome:SGD1:XI:214214:216346:1 // ensembl // 11 // --- /// GENEFINDER00000023183 // cdna:GeneFinder chromosome:SGD1:XI:215333:216346:1 // ensembl // 11 // --- /// YKL121W // cdna:known chromosome:SGD1:XI:213788:216346:1 gene:YKL121W // ensembl // 11 // --- --- No cerevisiae_gene -1.71249974757601 -2.11177167908573 1.14209590448364 -1.88945705966666 1.08762336913246 Max fold change below threshold 4 2.11177167908573 Max fold change at or above threshold 0.719563089978416 -0.946351692720841 -0.770045254585556 0.99683385732798 979.743591308594 400.748502226616 0.409034063383213 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770821_at YKR087C.S1 Metalloendopeptidase of the mitochondrial inner membrane, involved in turnover of membrane-embedded proteins; member of a family of predicted membrane-bound metallopeptidases in prokaryotes and higher eukaryotes 2.11121608883947 501.942504882813 940.496612548828 OMA1 6515 // misfolded or incompletely synthesized protein catabolism // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5743 // mitochondrial inner membrane // inferred from direct assay 4222 // metalloendopeptidase activity // inferred from mutant phenotype /// 4222 // metalloendopeptidase activity // inferred from sequence similarity 873.968078613281 413.964294433594 589.920715332031 1007.02514648438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR087C /GEN=OMA1 /DB_XREF=GI:6322940 /SEG=NC_001143:-602837,603781 /DEF=Metalloendopeptidase of the mitochondrial inner membrane, involved in turnover of membrane-embedded proteins; member of a family of predicted membrane-bound metallopeptidases in prokaryotes and higher eukaryotes /NOTE=Oma1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 12963738]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: metalloendopeptidase activity [goid GO:0004222] [evidence IMP,ISS] [pmid 12963738]; go_process: misfolded or incompletely synthesized protein catabolism [goid GO:0006515] [evidence IMP] [pmid 12963738] --- --- --- --- --- --- S0001795 // OMA1 SGDID:S0001795, Chr XI from 603874-602837, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018489 // cdna:Genscan chromosome:SGD1:XI:602837:603874:-1 // ensembl // 11 // --- /// GENEFINDER00000023033 // cdna:GeneFinder chromosome:SGD1:XI:602837:603874:-1 // ensembl // 11 // --- /// YKR087C // cdna:known chromosome:SGD1:XI:602837:603874:-1 gene:YKR087C // ensembl // 11 // --- --- No cerevisiae_gene -1.12348361296927 -2.11121608883947 1.14923354433133 -1.48150091342593 1.15224476857578 Max fold change below threshold 4 2.11121608883947 Max fold change at or above threshold 0.568389616943714 -1.14332172964131 -0.488573632963269 1.06350574566086 721.21955871582 268.73911018784 0.372617612681425 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777012_at YJL081C.S1 Nuclear actin-related protein involved in chromatin remodeling, component of chromatin-remodeling enzyme complexes 2.1110822993513 564.64030456543 316.961791992188 ARP4 6325 // establishment and/or maintenance of chromatin architecture // inferred from mutant phenotype /// 6325 // establishment and/or maintenance of chromatin architecture // inferred from physical interaction /// 6338 // chromatin remodeling // inferred from direct assay /// 6355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 16573 // histone acetylation // inferred from direct assay 123 // histone acetyltransferase complex // inferred from direct assay /// 790 // nuclear chromatin // inferred from direct assay /// 812 // SWR1 complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay /// 31011 // INO80 complex // inferred from physical interaction 3682 // chromatin binding // inferred from direct assay /// 4402 // histone acetyltransferase activity // inferred from direct assay 310.700317382813 473.366668701172 655.913940429688 323.223266601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL081C /GEN=ARP4 /DB_XREF=GI:6322380 /SEG=NC_001142:-283718,285187 /DEF=54.8 kDa actin-related protein /NOTE=Arp4p; go_component: SWR1 complex [goid GO:0000812] [evidence IPI] [pmid 14690608]; go_component: histone acetyltransferase complex [goid GO:0000123] [evidence IDA] [pmid 10911987]; go_component: nuclear chromatin [goid GO:0000790] [evidence IDA] [pmid 10436015]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11011149]; go_function: chromatin binding [goid GO:0003682] [evidence IDA] [pmid 10436015]; go_function: histone acetyltransferase activity [goid GO:0004402] [evidence IDA] [pmid 10911987]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 14645854]; go_process: establishment and/or maintenance of chromatin architecture [goid GO:0006325] [evidence IMP,IPI] [pmid 10436015]; go_process: histone acetylation [goid GO:0016573] [evidence IDA] [pmid 10911987]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IDA] [pmid 10911987]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence IMP] [pmid 8598290] --- --- --- --- --- --- S0003617 // ARP4 SGDID:S0003617, Chr X from 285187-283718, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024076 // cdna:Genscan chromosome:SGD1:X:283718:285187:-1 // ensembl // 11 // --- /// GENEFINDER00000024287 // cdna:GeneFinder chromosome:SGD1:X:283718:285187:-1 // ensembl // 11 // --- /// YJL081C // cdna:known chromosome:SGD1:X:283718:285187:-1 gene:YJL081C // ensembl // 11 // --- --- No cerevisiae_gene 1.28484255224522 1.52354742566271 1.51989877643004 2.1110822993513 1.04030555657052 Max fold change below threshold 4 2.1110822993513 Max fold change at or above threshold -0.806412186558751 0.201853694368819 1.33334883302878 -0.728790340838843 440.801048278809 161.332793656284 0.365999115215898 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778138_at SPBC11G11.05.S1 --- 2.111027292211 --- --- --- --- 14.1043949127197 6.78770780563354 11.1570415496826 7.79745292663574 0.00585938012227416 0.149657994508743 0.00195312988944352 0.030273400247097 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11G11.05 /DEF=sequence orphan --- --- --- --- --- --- SPBC11G11.05 // |rpa34||DNA-directed RNA polymerase I |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.111027292211 -2.07793194942976 -1.38359067316117 -1.2641697935705 -1.8088464329858 Max fold change below threshold 4 2.111027292211 Max fold change at or above threshold PAAPPP No 3 0 PAPP 1 3 0 No No 2 < x = 3
1780136_at SPBC19G7.07c.S1 --- 2.11078550634926 --- --- --- --- 1.36664235591888 0.647456765174866 2.13237357139587 2.58398199081421 0.55908203125 0.5 0.42333984375 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19G7.07c /DEF=hypothetical protein --- --- --- --- --- --- SPBC19G7.07c // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.20321954546085 -2.11078550634926 -1.19523352726301 1.56030110010906 1.89075216322915 Max fold change below threshold 1 2.11078550634926 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776594_at YGR093W.S1 Hypothetical protein 2.11059530998263 649.142120361328 1301.90631103516 --- --- 5634 // nucleus // inferred from direct assay --- 1275.07666015625 604.131286621094 694.152954101563 1328.73596191406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR093W /GEN=DBF2 /DB_XREF=GI:6321530 /SEG=NC_001139:+670390,671913 /DEF=Hypothetical ORF /NOTE=Ygr093wp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003325 // YGR093W SGDID:S0003325, Chr VII from 670392-671915, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019412 // cdna:Genscan chromosome:SGD1:VII:670392:671915:1 // ensembl // 11 // --- /// GENEFINDER00000021407 // cdna:GeneFinder chromosome:SGD1:VII:670392:671915:1 // ensembl // 11 // --- /// YGR093W // cdna:known chromosome:SGD1:VII:670392:671915:1 gene:YGR093W // ensembl // 11 // --- --- No cerevisiae_gene -1.14648755631773 -2.11059530998263 -1.06950274818691 -1.83688141442339 1.04208319659089 Max fold change below threshold 4 2.11059530998263 Max fold change at or above threshold 0.789762394597463 -0.979168003570246 -0.741828168792173 0.931233777764956 975.524215698242 379.294388422594 0.388810838643415 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772882_at YNR016C.S1 Acetyl-CoA carboxylase, biotin containing enzyme that catalyzes the carboxylation of acetyl-CoA to form malonyl-CoA; required for de novo biosynthesis of long-chain fatty acids 2.11050931152112 5773.30493164063 3007.03039550781 ACC1 6606 // protein-nucleus import // inferred from mutant phenotype /// 6633 // fatty acid biosynthesis // traceable author statement /// 6998 // nuclear membrane organization and biogenesis // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // inferred from direct assay /// 5829 // cytosol // traceable author statement 3989 // acetyl-CoA carboxylase activity // inferred from mutant phenotype /// 3989 // acetyl-CoA carboxylase activity // inferred from sequence similarity /// 4075 // biotin carboxylase activity // inferred from mutant phenotype /// 4075 // biotin carboxylase activity // inferred from sequence similarity 3166.23046875 6682.35888671875 4864.2509765625 2847.83032226563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR016C /GEN=ACC1 /DB_XREF=GI:6324343 /SEG=NC_001146:-654672,661373 /DEF=Acetyl-CoA carboxylase, biotin containing enzyme that catalyzes the carboxylation of acetyl-CoA to form malonyl-CoA; required for de novo biosynthesis of long-chain fatty acids /NOTE=Acc1p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 9438137]; go_function: acetyl-CoA carboxylase activity [goid GO:0003989] [evidence IMP,ISS] [pmid 8098706]; go_function: biotin carboxylase activity [goid GO:0004075] [evidence ISS] [pmid 1350093]; go_function: biotin carboxylase activity [goid GO:0004075] [evidence IMP] [pmid 6108218]; go_process: fatty acid biosynthesis [goid GO:0006633] [evidence TAS]; go_process: nuclear membrane organization and biogenesis [goid GO:0006998] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus import [goid GO:0006606] [evidence IMP] [pmid 12730220] --- --- --- --- --- --- S0005299 // ACC1 SGDID:S0005299, Chr XIV from 661374-654673, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020050 // cdna:Genscan chromosome:SGD1:XIV:654673:661374:-1 // ensembl // 11 // --- /// GENEFINDER00000020612 // cdna:GeneFinder chromosome:SGD1:XIV:654673:661374:-1 // ensembl // 11 // --- /// YNR016C // cdna:known chromosome:SGD1:XIV:654673:661374:-1 gene:YNR016C // ensembl // 11 // --- --- No cerevisiae_gene 1.2866911406382 2.11050931152112 1.0578001338589 1.53629087477099 -1.11180446531346 Max fold change below threshold 4 2.11050931152112 Max fold change at or above threshold -0.693076380354804 1.29799437645673 0.268458175747916 -0.873376171849843 4390.16766357422 1765.94850079533 0.402250810475333 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779288_at SPCC550.08.S1 --- 2.1101873212824 --- --- --- --- 4.43466186523438 3.1733980178833 2.10154891014099 2.20492696762085 0.567627012729645 0.850341975688934 0.5 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC550.08 /DEF=N-acetyltransferase (predicted) --- --- --- --- --- --- SPCC550.08 // |||N-acetyltransferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.14736241032761 -1.39744899323797 1.18740344252142 -2.1101873212824 -2.0112511345532 Max fold change below threshold 2 2.1101873212824 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776280_at YKL090W.S1 Protein of unknown function; has two CUE domains that bind ubiquitin, which may facilitate intramolecular monoubiquitination 2.10986348299177 159.820877075195 165.616836547852 CUE2 --- --- 5515 // protein binding // inferred from direct assay 145.620010375977 161.464233398438 158.177520751953 185.613662719727 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL090W /GEN=CUE2 /DB_XREF=GI:6322760 /SEG=NC_001143:+271523,272854 /DEF=Protein of unknown function; has two CUE domains that bind ubiquitin, which may facilitate intramolecular monoubiquitination /NOTE=Cue2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 12787503]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001573 // CUE2 SGDID:S0001573, Chr XI from 271523-272854, Verified ORF // sgd // 11 // --- /// GENSCAN00000018350 // cdna:Genscan chromosome:SGD1:XI:271523:272854:1 // ensembl // 11 // --- /// YKL090W // cdna:known chromosome:SGD1:XI:271523:272854:1 gene:YKL090W // ensembl // 11 // --- --- No cerevisiae_gene 2.10986348299177 1.10880525953509 2.09888620907138 1.08623478561466 1.27464393279804 Max fold change below threshold 4 2.10986348299177 Max fold change at or above threshold -1.02261846934896 -0.0750343644020378 -0.271600435008439 1.36925326875944 162.718856811523 16.7206509055452 0.102757917755731 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770211_at YEL062W.S1 Regulator of nitrogen permeases; transcription is induced in response to proline and urea; contains two PEST sequences 2.10923236534606 273.864250183105 495.442718505859 NPR2 15824 // L-proline transport // inferred from mutant phenotype /// 15840 // urea transport // inferred from mutant phenotype --- 16247 // channel regulator activity // inferred from mutant phenotype /// 16247 // channel regulator activity // inferred from sequence similarity 448.854309082031 212.804580688477 334.923919677734 542.031127929688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL062W /GEN=NPR2 /DB_XREF=GI:37362640 /SEG=NC_001137:+34407,36254 /DEF=Regulator of nitrogen permeases; transcription is induced in response to proline and urea; contains two PEST sequences /NOTE=Npr2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: channel regulator activity [goid GO:0016247] [evidence IMP,ISS] [pmid 7867803]; go_process: L-proline transport [goid GO:0015824] [evidence IMP] [pmid 7867803]; go_process: urea transport [goid GO:0015840] [evidence IMP] [pmid 7867803] --- --- --- --- --- --- S0000788 // NPR2 SGDID:S0000788, Chr V from 34407-36254, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019686 // cdna:GeneFinder chromosome:SGD1:V:34380:36254:1 // ensembl // 11 // --- /// GENSCAN00000016753 // cdna:Genscan chromosome:SGD1:V:34746:36254:1 // ensembl // 11 // --- /// YEL062W // cdna:known chromosome:SGD1:V:34407:36254:1 gene:YEL062W // ensembl // 11 // --- --- No cerevisiae_gene -1.97973511926955 -2.10923236534606 1.20836238203575 -1.34016796863575 1.20758811258427 Max fold change below threshold 4 2.10923236534606 Max fold change at or above threshold 0.450621639746786 -1.2061968840856 -0.349048755458082 1.10462399979689 384.653484344482 142.471685943943 0.370389692912155 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771308_at SPBC3D6.01.S1 --- 2.10901772067614 --- --- --- --- 28.4426918029785 38.6310691833496 46.087703704834 26.2620239257813 0.00122069998178631 0.014160200022161 0.00195312988944352 0.00805663969367743 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3D6.01 /DEF=pseudo --- --- --- --- --- --- SPBC31A8.02 // ||SPBC3D6.01|pseudo|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.10901772067614 1.35820721368236 -1.4008462101378 1.62037067462116 -1.08303502743581 Max fold change below threshold 4 2.10901772067614 Max fold change at or above threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1770172_at SPBC19C2.15c.S1 --- 2.10850654383647 --- --- --- --- 5.26741886138916 8.93816757202148 11.1063871383667 8.94458293914795 0.533936023712158 0.213134765625 0.0952147990465164 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C2.15c /DEF=PTPLA --- --- --- --- --- --- SPBC19C2.15c // ||SPBC2F12.16|phosphoprotein phosphatase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.49998377343093 1.69687807391574 1.1807610465431 2.10850654383647 1.69809600765051 Max fold change below threshold 4 2.10850654383647 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771195_at YCR026C.S1 Hypothetical protein 2.10805871230716 361.681762695313 529.803466796875 --- --- --- --- 517.649230957031 293.464996337891 429.898529052734 541.957702636719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR026C /GEN=PMP1 /DB_XREF=GI:10383789 /SEG=NC_001135:-164106,166334 /DEF=Hypothetical ORF /NOTE=Ycr026cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000621 // span:114-136 // numtm:1 S0000621 // YCR026C SGDID:S0000621, Chr III from 166334-164106, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022477 // cdna:Genscan chromosome:SGD1:III:164106:166334:-1 // ensembl // 11 // --- /// GENEFINDER00000023346 // cdna:GeneFinder chromosome:SGD1:III:164106:166334:-1 // ensembl // 11 // --- /// YCR026C // cdna:known chromosome:SGD1:III:164106:166334:-1 gene:YCR026C // ensembl // 11 // --- --- No cerevisiae_gene -2.10805871230716 -1.76392154913433 1.1266243493671 -1.20411956769811 1.04695935051376 Max fold change below threshold 4 2.10805871230716 Max fold change at or above threshold 0.640024594342733 -1.35538878179562 -0.141024637967617 0.856388825420503 445.742614746094 112.349770378404 0.252050772489863 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774284_at SPBP4G3.03.S1 --- 2.10796185269055 --- --- --- --- 0.23292450606823 0.490995973348618 0.415342450141907 0.234867006540298 0.985840022563934 0.962401986122131 0.969726979732513 0.989257991313934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP4G3.03 /DEF=hypothetical protein --- --- --- --- --- --- SPBP4G3.03 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.05427986718075 2.10796185269055 1.34045788517 1.78316338264657 1.00833961400137 Max fold change below threshold 0 2.10796185269055 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778001_at YOR030W.S1 Probable multiple transmembrane protein, involved in invasive growth upon nitrogen starvation; required for accumulation of processed Rim101p 2.10786096146223 192.802841186523 323.320693969727 DFG16 1403 // invasive growth (sensu Saccharomyces) // inferred from mutant phenotype /// 16485 // protein processing // inferred from mutant phenotype --- --- 309.857330322266 147.000839233398 238.604843139648 336.784057617188 0.000732421991415322 0.0107421996071935 0.00292969006113708 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR030W /GEN=DFG16 /DB_XREF=GI:6324604 /SEG=NC_001147:+386824,388683 /DEF=Probable multiple transmembrane protein, involved in invasive growth upon nitrogen starvation /NOTE=Dfg16p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: invasive growth (sensu Saccharomyces) [goid GO:0001403] [evidence IMP] [pmid 9055077] --- --- --- --- --- S0005556 // span:167-189,202-224,291-313,326-348,380-402,409-431 // numtm:6 S0005556 // DFG16 SGDID:S0005556, Chr XV from 386824-388683, Verified ORF // sgd // 11 // --- /// GENSCAN00000017486 // cdna:Genscan chromosome:SGD1:XV:386824:388683:1 // ensembl // 11 // --- /// YOR030W // cdna:known chromosome:SGD1:XV:386824:388683:1 gene:YOR030W // ensembl // 11 // --- --- No cerevisiae_gene 1.17565013904203 -2.10786096146223 1.10348420062038 -1.29862129471075 1.08690040434711 Max fold change below threshold 4 2.10786096146223 Max fold change at or above threshold 0.610514350165364 -1.30907527411338 -0.229338787927676 0.927899711875695 258.061767578125 84.8392224197699 0.328755488331242 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1779975_at SPAC2E12.02.S1 --- 2.10778071221525 --- --- --- --- 4.64506578445435 9.52499866485596 9.79078006744385 7.19915914535522 0.303710997104645 0.24609400331974 0.274170011281967 0.0107421996071935 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2E12.02 /GEN=hsf1 /DEF=transcriptional activator --- --- --- --- --- --- M94683 // Schizosaccharomyces pombe heat shock transcription factor (HSF) mRNA, complete cds. // gb // 11 // --- /// SPAC2E12.02 // |hsf1|hstf, hsf|transcriptional factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.2336127830401 2.0505627060726 -1.91604944148058 2.10778071221525 1.5498508480652 Max fold change below threshold 4 2.10778071221525 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1776454_at SPBC17D1.01.S1 --- 2.10749347555004 --- --- --- --- 10.1777687072754 21.4495811462402 19.3484554290771 14.7890453338623 0.171387001872063 0.0676269978284836 0.0805663987994194 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17D1.01 /DEF=hypothetical protein --- --- --- --- --- --- SPBC17D1.01 // ||SPBC17D11.09|sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.14593946156706 2.10749347555004 1.05571344293435 1.9010508084396 1.45307343477855 Max fold change below threshold 4 2.10749347555004 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778788_at YBR082C.S1 Ubiquitin-conjugating enzyme that mediates degradation of short-lived and abnormal proteins; interacts with E3-CaM in ubiquitinating calmodulin; interacts with many SCF ubiquitin protein ligases; component of the cellular stress response 2.10702426174628 5095.36376953125 2546.69836425781 UBC4 209 // protein polyubiquitination // traceable author statement /// 209 // protein polyubiquitination // inferred from direct assay /// 6513 // protein monoubiquitination // traceable author statement /// 6513 // protein monoubiquitination // inferred from direct assay /// 6950 // response to stress // traceable author statement /// 6950 // response to stress // inferred from direct assay /// 30437 // sporulation (sensu Fungi) // traceable author statement /// 43162 // ubiquitin-dependent protein catabolism via the multivesicular body pathway // inferred from mutant phenotype 502 // proteasome complex (sensu Eukaryota) // inferred from physical interaction 4840 // ubiquitin conjugating enzyme activity // traceable author statement /// 4840 // ubiquitin conjugating enzyme activity // inferred from direct assay 2575.23657226563 5426.0859375 4764.6416015625 2518.16015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR082C /GEN=UBC4 /DB_XREF=GI:6319556 /SEG=NC_001134:-406585,407126 /DEF=Ubiquitin-conjugating enzyme that mediates degradation of short-lived and abnormal proteins; interacts with E3-CaM in ubiquitinating calmodulin; interacts with many SCF ubiquitin protein ligases; component of the cellular stress response /NOTE=Ubc4p; go_component: proteasome complex (sensu Eukarya) [goid GO:0000502] [evidence IPI] [pmid 10848595]; go_function: ubiquitin conjugating enzyme activity [goid GO:0004840] [evidence TAS] [pmid 8982460]; go_process: protein monoubiquitination [goid GO:0006513] [evidence TAS] [pmid 8982460]; go_process: protein polyubiquitination [goid GO:0000209] [evidence TAS] [pmid 8982460]; go_process: response to stress [goid GO:0006950] [evidence TAS] [pmid 8982460]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence TAS] [pmid 8982460] --- --- --- --- --- --- S0000286 // UBC4 SGDID:S0000286, Chr II from 407163-407117,407021-406622, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YBR082C // cdna:known chromosome:SGD1:II:406622:407163:-1 gene:YBR082C // ensembl // 11 // --- GENSCAN00000021205 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 1.53841922707154 2.10702426174628 -1.13384462299357 1.85017627229901 -1.02266591974858 Max fold change below threshold 4 2.10702426174628 Max fold change at or above threshold -0.832624435969959 1.0727354407974 0.63066034774641 -0.870771352573851 3821.03106689453 1496.22619852326 0.391576559396909 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770742_at YOR003W.S1 Putative precursor to the subtilisin-like protease III 2.10603637828074 620.128356933594 1014.21328735352 YSP3 30163 // protein catabolism // inferred from sequence similarity --- 8233 // peptidase activity // inferred from sequence similarity 1014.36932373047 548.146789550781 692.109924316406 1014.05725097656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR003W /GEN=YSP3 /DB_XREF=GI:6324576 /SEG=NC_001147:+331455,332891 /DEF=subtilisin-like protease III /NOTE=Ysp3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: peptidase activity [goid GO:0008233] [evidence ISS] [pmid 8896276]; go_process: protein catabolism [goid GO:0030163] [evidence ISS] [pmid 8896276] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 3.29999995231628 --- S0005529 // YSP3 SGDID:S0005529, Chr XV from 331455-332891, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022770 // cdna:GeneFinder chromosome:SGD1:XV:331455:332891:1 // ensembl // 11 // --- /// GENSCAN00000017469 // cdna:Genscan chromosome:SGD1:XV:331506:332891:1 // ensembl // 11 // --- /// YOR003W // cdna:known chromosome:SGD1:XV:331455:332891:1 gene:YOR003W // ensembl // 11 // --- --- No cerevisiae_gene -2.10603637828074 -1.8505432177424 1.05706339935787 -1.46561881009344 -1.00030774668157 Max fold change below threshold 4 2.10603637828074 Max fold change at or above threshold 0.839166181115415 -1.14481534211682 -0.532189013567218 0.83783817456862 817.170822143555 234.993385129986 0.287569476004497 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779633_at YDL188C.S1 Catalytic subunit of protein phosphatase 2A, functionally redundant with Pph21p; methylated at C terminus; forms alternate complexes with several regulatory subunits; involved in signal transduction and regulation of mitosis 2.10585974324347 733.385711669922 1053.87969970703 PPH22 82 // G1/S transition of mitotic cell cycle // inferred from genetic interaction /// 6412 // protein biosynthesis // inferred from physical interaction /// 6470 // protein amino acid dephosphorylation // inferred from direct assay /// 7015 // actin filament organization // traceable author statement /// 7094 // mitotic spindle checkpoint // inferred from physical interaction /// 7117 // budding cell bud growth // traceable author statement 159 // protein phosphatase type 2A complex // traceable author statement 158 // protein phosphatase type 2A activity // traceable author statement /// 158 // protein phosphatase type 2A activity // inferred from direct assay 1019.98583984375 484.356018066406 982.415405273438 1087.77355957031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL188C /GEN=PPH22 /DB_XREF=GI:6320013 /SEG=NC_001136:-123866,124999 /DEF=Catalytic subunit of protein phosphatase 2A, functionally redundant with Pph21p; methylated at C terminus; forms alternate complexes with several regulatory subunits; involved in signal transduction and regulation of mitosis /NOTE=Pph22p; go_component: protein phosphatase type 2A complex [goid GO:0000159] [evidence TAS] [pmid 10329624]; go_function: protein phosphatase type 2A activity [goid GO:0000158] [evidence TAS] [pmid 10329624]; go_function: protein phosphatase type 2A activity [goid GO:0000158] [evidence IDA] [pmid 12135475]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IGI] [pmid 12518319]; go_process: actin filament organization [goid GO:0007015] [evidence TAS] [pmid 9001215]; go_process: bud growth [goid GO:0007117] [evidence TAS] [pmid 9001215]; go_process: mitotic spindle checkpoint [goid GO:0007094] [evidence IPI] [pmid 9001215]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence IDA] [pmid 12135475]; go_process: protein biosynthesis [goid GO:0006412] [evidence IPI] [pmid 10329624] --- --- --- --- --- --- S0002347 // PPH22 SGDID:S0002347, Chr IV from 124999-123866, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023711 // cdna:GeneFinder chromosome:SGD1:IV:123866:124999:-1 // ensembl // 11 // --- /// GENSCAN00000024963 // cdna:Genscan chromosome:SGD1:IV:123866:124999:-1 // ensembl // 11 // --- /// YDL188C // cdna:known chromosome:SGD1:IV:123866:124999:-1 gene:YDL188C // ensembl // 11 // --- --- No cerevisiae_gene -1.22863387897792 -2.10585974324347 -1.06405664493233 -1.03824292083434 1.06645947137555 Max fold change below threshold 4 2.10585974324347 Max fold change at or above threshold 0.457283685299868 -1.48121020720507 0.321312805800216 0.702613716104991 893.632705688477 276.312359738827 0.309201261301139 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779256_at YBL042C.S1 High affinity uridine permease, localized to the plasma membrane; not involved in uracil transport 2.10585328292062 347.584701538086 435.961730957031 FUI1 15862 // uridine transport // inferred from genetic interaction /// 15862 // uridine transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from genetic interaction /// 5886 // plasma membrane // inferred from mutant phenotype 15213 // uridine transporter activity // inferred from genetic interaction /// 15213 // uridine transporter activity // inferred from mutant phenotype 414.199920654297 314.139099121094 381.030303955078 457.723541259766 0.000732421991415322 0.00122069998178631 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL042C /GEN=FUI1 /DB_XREF=GI:6319429 /SEG=NC_001134:-138306,140225 /DEF=High affinity uridine permease, localized to the plasma membrane; not involved in uracil transport /NOTE=Fui1p; go_component: plasma membrane [goid GO:0005886] [evidence IGI,IMP] [pmid 10827169]; go_function: uridine transporter activity [goid GO:0015213] [evidence IGI,IMP] [pmid 10827169]; go_process: uridine transport [goid GO:0015862] [evidence IGI,IMP] [pmid 10827169] --- --- --- --- --- S0000138 // span:132-149,159-181,193-215,220-242,255-277,282-304,368-390,485-507,538-560,570-592 // numtm:10 S0000138 // FUI1 SGDID:S0000138, Chr II from 140263-138344, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000021104 // cdna:Genscan chromosome:SGD1:II:138344:140263:-1 // ensembl // 10 // --- /// GENEFINDER00000022372 // cdna:GeneFinder chromosome:SGD1:II:138344:140263:-1 // ensembl // 10 // --- /// YBL042C // cdna:known chromosome:SGD1:II:138344:140263:-1 gene:YBL042C // ensembl // 10 // --- --- No cerevisiae_gene 2.10585328292062 -1.31852393354777 1.10311288934694 -1.08705243744374 1.10507877581607 Max fold change below threshold 4 2.10585328292062 Max fold change at or above threshold 0.370451247530207 -1.2823843850978 -0.177454751651395 1.08938788921899 391.773216247559 60.5388821235095 0.154525321315624 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773443_at SPCC895.06.S1 --- 2.10566304601124 --- --- --- --- 3.41244101524353 1.62060165405273 3.76362133026123 3.37280178070068 0.149657994508743 0.55908203125 0.432372987270355 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC895.06 /DEF=WD repeat protein --- --- --- --- --- --- SPCC895.06 // |||WD repeat protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.629273486732 -2.10566304601124 -1.61550058591294 1.10291176124333 -1.01175261314485 Max fold change below threshold 3 2.10566304601124 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772819_at YGL131C.S1 DNA binding protein with similarity to the S. pombe Snt2 protein 2.10524170407909 267.407981872559 317.616577148438 SNT2 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3677 // DNA binding // inferred from physical interaction 281.201416015625 251.79167175293 283.024291992188 354.03173828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL131C /GEN=SNT2 /DB_XREF=GI:6321307 /SEG=NC_001139:-261651,265862 /DEF=22% sequence identity with S. pombe Snt2 /NOTE=Snt2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003099 // SNT2 SGDID:S0003099, Chr VII from 265864-261653, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019251 // cdna:Genscan chromosome:SGD1:VII:261653:265864:-1 // ensembl // 11 // --- /// GENEFINDER00000021731 // cdna:GeneFinder chromosome:SGD1:VII:261653:265864:-1 // ensembl // 11 // --- /// YGL131C // cdna:known chromosome:SGD1:VII:261653:265864:-1 gene:YGL131C // ensembl // 11 // --- YGL132W // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene -1.38995890420154 -1.11680189443102 2.10524170407909 1.00648245660492 1.25899699687706 Max fold change below threshold 4 2.10524170407909 Max fold change at or above threshold -0.260386619099027 -0.937426341185798 -0.218422315242907 1.41623527552773 292.512279510498 43.4387278962727 0.148502237133309 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778878_s_at YAR073W.S1 Inosine monophosphate dehydrogenase, catalyzes the first step of GMP biosynthesis, expression is induced by mycophenolic acid resulting in resistance to the drug, expression is repressed by nutrient limitation /// Nonfunctional protein with homology to IMP dehydrogenase; IMD1 is a probable pseudogene that is located close to the telomere and is not expressed at detectable levels /// Hypothetical protein 2.10515812280678 175.024375915527 264.338722229004 IMD2 /// IMD1 6183 // GTP biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 3938 // IMP dehydrogenase activity // traceable author statement /// 3938 // IMP dehydrogenase activity // inferred from mutant phenotype 247.024642944336 117.342559814453 232.706192016602 281.652801513672 0.000244141003349796 0.00122069998178631 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR073W /GEN=IMD1 /DB_XREF=GI:6319352 /SEG=NC_001133:+227735,228946 /DEF=Nonfunctional protein with homology to IMP dehydrogenase; IMD1 is a probable pseudogene that is located close to the telomere and is not expressed at detectable levels /NOTE=Imd1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence IEP,IMP] [pmid 12746440]; go_process: biological_process unknown [goid GO:0000004] [evidence IMP] [pmid 12746440] --- --- --- --- --- --- S0000095 // IMD1 SGDID:S0000095, Chr I from 227733-228944, Verified ORF // sgd // 11 // --- /// S0001259 // IMD2 SGDID:S0001259, Chr VIII from 554395-555966, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018180 // cdna:GeneFinder chromosome:SGD1:I:227733:228940:1 // ensembl // 11 // --- /// GENSCAN00000020401 // cdna:Genscan chromosome:SGD1:I:227733:228944:1 // ensembl // 11 // --- /// GENSCAN00000016740 // cdna:Genscan chromosome:SGD1:VIII:554395:555966:1 // ensembl // 11 // --- /// GENEFINDER00000020317 // cdna:GeneFinder chromosome:SGD1:VIII:554395:555966:1 // ensembl // 11 // --- /// YAR073W // cdna:known chromosome:SGD1:I:227733:228944:1 gene:YAR073W // ensembl // 11 // --- /// YHR216W // cdna:known chromosome:SGD1:VIII:554395:555966:1 gene:YHR216W // ensembl // 11 // --- --- No cerevisiae_gene 1.6759356518902 -2.10515812280678 -1.62594200444445 -1.06153016730519 1.14018098824715 Max fold change below threshold 4 2.10515812280678 Max fold change at or above threshold 0.383746299584545 -1.43627522966678 0.182794184033587 0.869734746048647 219.681549072266 71.2530489588374 0.324346988901641 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772429_at SPAC6G9.14.S1 --- 2.10498498294997 --- --- --- --- 9.00675296783447 18.9590797424316 12.9139623641968 12.1667966842651 0.0239257998764515 0.0676269978284836 0.0952147990465164 0.129638999700546 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G9.14 /DEF=serine-rich protein --- --- --- --- --- --- SPAC6G9.14 // |||serine-rich protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.01603950436651 2.10498498294997 -1.12800388746721 1.43380887766279 1.35085271326038 Max fold change below threshold 4 2.10498498294997 Max fold change at or above threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1769627_at YLR151C.S1 Peroxisomal nudix pyrophosphatase with specificity for coenzyme A and CoA derivatives, may function to remove potentially toxic oxidized CoA disulfide from peroxisomes to maintain the capacity for beta-oxidation of fatty acids 2.10479204137546 304.574630737305 635.497619628906 PCD1 --- 5777 // peroxisome // inferred from direct assay 16462 // pyrophosphatase activity // inferred from direct assay 582.440368652344 276.721099853516 332.428161621094 688.554870605469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR151C /GEN=PCD1 /DB_XREF=GI:6323180 /SEG=NC_001144:-441716,442738 /DEF=peroxisomal nudix hydrolase active towards coenzyme A and its derivatives /NOTE=Pcd1p; go_component: peroxisome [goid GO:0005777] [evidence IDA] [pmid 10922370]; go_function: pyrophosphatase activity [goid GO:0016462] [evidence IDA] [pmid 10922370]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004141 // PCD1 SGDID:S0004141, Chr XII from 442738-441716, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024725 // cdna:GeneFinder chromosome:SGD1:XII:441668:442717:-1 // ensembl // 11 // --- /// YLR151C // cdna:known chromosome:SGD1:XII:441716:442738:-1 gene:YLR151C // ensembl // 11 // --- --- No cerevisiae_gene -1.04820808835846 -2.10479204137546 1.58336343486746 -1.75207890273814 1.18218946979697 Max fold change below threshold 4 2.10479204137546 Max fold change at or above threshold 0.569932144802485 -0.980180495043249 -0.69772456443126 1.10797291467202 470.036125183105 197.223905502282 0.419593080054118 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774596_s_at YML026C.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps18Ap and has similarity to E. coli S13 and rat S18 ribosomal proteins /// Protein component of the small (40S) ribosomal subunit; nearly identical to Rps18Bp and has similarity to E. coli S13 and rat S18 ribosomal proteins 2.10434994455168 3133.55017089844 5451.1826171875 RPS18B /// RPS18A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 3735 // structural constituent of ribosome // traceable author statement 6533.11572265625 3104.57666015625 3162.52368164063 4369.24951171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML026C /GEN=RPS18B /DB_XREF=GI:6323615 /SEG=NC_001145:-222987,223828 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps18Ap and has similarity to E. coli S13 and rat S18 ribosomal proteins /NOTE=Rps18bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0002858 // RPS18A SGDID:S0002858, Chr IV from 1359913-1359959,1360395-1360788, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0004488 // RPS18B SGDID:S0004488, Chr XIII from 223828-223782,223380-222987, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YDR450W // cdna:known chromosome:SGD1:IV:1359913:1360788:1 gene:YDR450W // ensembl // 11 // --- /// YML026C // cdna:known chromosome:SGD1:XIII:222987:223828:-1 gene:YML026C // ensembl // 11 // --- GENEFINDER00000023500 // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene -1.29334563800299 -2.10434994455168 -1.59045582978804 -2.06579187393375 -1.49524894495812 Max fold change below threshold 4 2.10434994455168 Max fold change at or above threshold 1.39735526152024 -0.740718389617234 -0.704582006878372 0.0479451349753695 4292.36639404297 1603.56452672993 0.373585192763458 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773015_at YER109C.S1 Transcription factor required for flocculation, diploid filamentous growth, and haploid invasive growth; genome reference strain S288C and most laboratory strains have a mutation in this gene 2.10432930040683 143.152908325195 296.227554321289 FLO8 501 // flocculation (sensu Saccharomyces) // inferred from mutant phenotype /// 1403 // invasive growth (sensu Saccharomyces) // traceable author statement /// 7124 // pseudohyphal growth // traceable author statement 5634 // nucleus // traceable author statement /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3704 // specific RNA polymerase II transcription factor activity // traceable author statement 275.630950927734 155.323013305664 130.982803344727 316.824157714844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER109C /GEN=FLO8 /DB_XREF=GI:6320955 /SEG=NC_001137:-375211,377610 /DEF=Transcription factor required for flocculation, diploid filamentous growth, and haploid invasive growth; genome reference strain S288C and most laboratory strains have a mutation in this gene /NOTE=Flo8p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 10064592]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence TAS] [pmid 10064592]; go_process: flocculation (sensu Saccharomyces) [goid GO:0000501] [evidence IMP] [pmid 10591965]; go_process: invasive growth (sensu Saccharomyces) [goid GO:0001403] [evidence TAS] [pmid 10064592]; go_process: pseudohyphal growth [goid GO:0007124] [evidence TAS] [pmid 10064592] --- --- --- --- --- --- S0000911 // FLO8 SGDID:S0000911, Chr V from 377610-375211, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016892 // cdna:Genscan chromosome:SGD1:V:375211:376995:-1 // ensembl // 11 // --- /// GENEFINDER00000019579 // cdna:GeneFinder chromosome:SGD1:V:375211:377508:-1 // ensembl // 11 // --- /// YER109C // cdna:known chromosome:SGD1:V:375211:377610:-1 gene:YER109C // ensembl // 11 // --- --- No cerevisiae_gene -1.46974563545247 -1.77456608046429 1.26986755241852 -2.10432930040683 1.14945058473462 Max fold change below threshold 4 2.10432930040683 Max fold change at or above threshold 0.618057054827799 -0.711156622164877 -0.980077697701761 1.07317726503884 219.690231323242 90.5106076656275 0.411991953945619 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775670_at YMR073C.S1 Hypothetical protein 2.10430148797876 444.432052612305 261.555099487305 --- --- 5737 // cytoplasm // inferred from direct assay --- 242.903289794922 377.722351074219 511.141754150391 280.206909179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR073C /GEN=ABF2 /DB_XREF=GI:6323718 /SEG=NC_001145:-412267,412872 /DEF=Hypothetical ORF /NOTE=Ymr073cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004677 // YMR073C SGDID:S0004677, Chr XIII from 412872-412267, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YMR073C // cdna:known chromosome:SGD1:XIII:412267:412872:-1 gene:YMR073C // ensembl // 11 // --- --- No cerevisiae_gene 1.93911831903064 1.55503184577336 1.48677114199402 2.10430148797876 1.15357395701088 Max fold change below threshold 4 2.10430148797876 Max fold change at or above threshold -0.91912133751999 0.206455497109422 1.32034687098212 -0.607681030571549 352.993576049805 119.777750511084 0.339319915822445 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778464_at SPAC22E12.19.S1 --- 2.10424775985293 --- --- --- --- 1.06364548206329 1.35248672962189 0.879919707775116 1.02336800098419 0.932372987270355 0.828612983226776 0.904784977436066 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22E12.19 /DEF=Myb family --- --- --- --- --- --- SPAC22E12.19 // ||SPAC2E12.01|Myb family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.09809445489994 1.27155781924471 -2.10424775985293 -1.20879833996755 -1.03935776870135 Max fold change below threshold 0 2.10424775985293 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775351_at YDL226C.S1 ADP-ribosylation factor GTPase activating protein (ARF GAP), involved in ER-Golgi transport; shares functional similarity with Glo3p 2.10419950177839 148.716045379639 271.406127929688 GCS1 6888 // ER to Golgi transport // inferred from mutant phenotype /// 6888 // ER to Golgi transport // inferred from genetic interaction /// 6890 // retrograde transport, Golgi to ER // inferred from mutant phenotype /// 6890 // retrograde transport, Golgi to ER // inferred from direct assay /// 6890 // retrograde transport, Golgi to ER // inferred from genetic interaction /// 30037 // actin filament reorganization during cell cycle // inferred from mutant phenotype /// 30037 // actin filament reorganization during cell cycle // inferred from genetic interaction /// 30037 // actin filament reorganization during cell cycle // inferred from physical interaction 5793 // ER-Golgi intermediate compartment // inferred from physical interaction /// 5856 // cytoskeleton // inferred from physical interaction /// 5856 // cytoskeleton // inferred from mutant phenotype 3779 // actin binding // inferred from direct assay /// 8060 // ARF GTPase activator activity // inferred from direct assay /// 8060 // ARF GTPase activator activity // inferred from sequence similarity 251.274719238281 119.415824890137 178.016265869141 291.537536621094 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL226C /GEN=GCS1 /DB_XREF=GI:6319975 /SEG=NC_001136:-51116,52174 /DEF=Zn-finger-containing protein that functions as ADP-ribosylation factor GTPase-activating protein and is involved in regulating vesicle transport /NOTE=Gcs1p; go_component: ER-Golgi intermediate compartment [goid GO:0005793] [evidence IPI] [pmid 9927415]; go_component: cytoskeleton [goid GO:0005856] [evidence IMP,IPI] [pmid 10069805]; go_function: ARF GTPase activator activity [goid GO:0008060] [evidence IDA,ISS] [pmid 8816753]; go_function: actin binding [goid GO:0003779] [evidence IDA] [pmid 10069805]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IGI,IMP] [pmid 9927415]; go_process: cell cycle-dependent actin filament reorganization [goid GO:0030037] [evidence IGI,IMP,IPI] [pmid 10069805]; go_process: retrograde transport, Golgi to ER [goid GO:0006890] [evidence IDA,IGI,IMP] [pmid 9927415] --- --- --- --- --- --- S0002385 // GCS1 SGDID:S0002385, Chr IV from 52174-51116, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023475 // cdna:GeneFinder chromosome:SGD1:IV:51116:52174:-1 // ensembl // 11 // --- /// GENSCAN00000024933 // cdna:Genscan chromosome:SGD1:IV:51116:52174:-1 // ensembl // 11 // --- /// YDL226C // cdna:known chromosome:SGD1:IV:51116:52174:-1 gene:YDL226C // ensembl // 11 // --- --- No cerevisiae_gene 1.09468178003515 -2.10419950177839 1.17071839509726 -1.41152673892729 1.16023425478244 Max fold change below threshold 4 2.10419950177839 Max fold change at or above threshold 0.53837765919364 -1.18410780090223 -0.418604585965247 1.06433472767383 210.061086654663 76.551528243847 0.364425079689778 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774298_at SPAC1071.10c.S1 --- 2.10403241388147 --- --- --- --- 6.64395093917847 7.89146089553833 5.44324541091919 3.15772271156311 0.111571997404099 0.194580003619194 0.194580003619194 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1071.10c /GEN=pma1 /DEF=P-type proton ATPase (PMID 12707717) --- --- --- --- --- --- SPAC1071.10c // |pma1||P-type proton ATPase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.53266705049228 1.18776628060323 1.3859370037769 -1.22058632995871 -2.10403241388147 Max fold change below threshold 4 2.10403241388147 Max fold change at or above threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773461_at YML115C.S1 Component of the mannan polymerase I; forms a complex with Mnn9p, which is involved in in mannan synthesis; mutants are vanadate-resistant 2.10375750940671 455.396194458008 685.174591064453 VAN1 6487 // N-linked glycosylation // inferred from mutant phenotype /// 6487 // N-linked glycosylation // inferred from direct assay 136 // alpha-1,6-mannosyltransferase complex // inferred from physical interaction /// 5801 // Golgi cis-face // traceable author statement /// 16020 // membrane // traceable author statement 30 // mannosyltransferase activity // inferred from sequence similarity 636.626953125 302.614227294922 608.178161621094 733.722229003906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML115C /GEN=VAN1 /DB_XREF=GI:6323521 /SEG=NC_001145:-40187,41794 /DEF=vanadate resistance protein. /NOTE=Van1p; go_component: Golgi cis-face [goid GO:0005801] [evidence TAS] [pmid 10500155]; go_component: mannosyltransferase complex [goid GO:0000136] [evidence IPI] [pmid 9430634]; go_component: membrane [goid GO:0016020] [evidence TAS] [pmid 10500155]; go_function: mannosyltransferase activity [goid GO:0000030] [evidence ISS] [pmid 9434768]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IDA,IMP] [pmid 9430634] --- --- --- --- --- S0004583 // span:69-91 // numtm:1 S0004583 // VAN1 SGDID:S0004583, Chr XIII from 41794-40187, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018620 // cdna:Genscan chromosome:SGD1:XIII:40187:41536:-1 // ensembl // 11 // --- /// GENEFINDER00000022020 // cdna:GeneFinder chromosome:SGD1:XIII:40187:41536:-1 // ensembl // 11 // --- /// YML115C // cdna:known chromosome:SGD1:XIII:40187:41794:-1 gene:YML115C // ensembl // 11 // --- --- No cerevisiae_gene -1.07690390499 -2.10375750940671 1.30106324761545 -1.04677706846309 1.1525151824036 Max fold change below threshold 4 2.10375750940671 Max fold change at or above threshold 0.355975172154032 -1.43626843693559 0.203324806415758 0.876968458365803 570.28539276123 186.365695007132 0.326793737614037 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772294_at YLR388W.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps29Bp and has similarity to rat S29 and E. coli S14 ribosomal proteins /// Protein component of the small (40S) ribosomal subunit; nearly identical to Rps29Ap and has similarity to rat S29 and E. coli S14 ribosomal proteins 2.1031584741075 2801.61511230469 4203.64697265625 RPS29A /// RPS29B 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 4666.33203125 3384.50439453125 2218.72583007813 3740.9619140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR388W /GEN=RPS29A /DB_XREF=GI:6323420 /SEG=NC_001144:+898651,898821 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps29Bp and has similarity to rat S29 and E. coli S14 ribosomal proteins /NOTE=Rps29ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004380 // RPS29A SGDID:S0004380, Chr XII from 898651-898821, Verified ORF // sgd // 11 // --- /// YLR388W // cdna:known chromosome:SGD1:XII:898651:898821:1 gene:YLR388W // ensembl // 11 // --- --- No cerevisiae_gene 1.02679705269044 -1.37873422140918 -1.52406207404787 -2.1031584741075 -1.24736154455595 Max fold change below threshold 4 2.1031584741075 Max fold change at or above threshold 1.14972702927966 -0.116708158999698 -1.26848781600921 0.235468945729245 3502.63104248047 1012.15415410267 0.288969675032026 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779888_at YKR013W.S1 Protein of unknown function, has similarity to Pry1p and Pry3p and to the plant PR-1 class of pathogen related proteins 2.1018482184404 229.384941101074 456.201309204102 PRY2 --- 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5576 // extracellular region // inferred from direct assay --- 431.045593261719 205.079315185547 253.690567016602 481.357025146484 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR013W /GEN=PRY2 /DB_XREF=GI:6322864 /SEG=NC_001143:+463602,464591 /DEF=Protein of unknown function, has similarity to Pry1p and Pry3p and to the plant PR-1 class of pathogen related proteins /NOTE=Pry2p; go_component: extracellular [goid GO:0005576] [evidence IDA] [pmid 11935221]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001721 // PRY2 SGDID:S0001721, Chr XI from 463602-464591, Verified ORF // sgd // 11 // --- /// GENSCAN00000018427 // cdna:Genscan chromosome:SGD1:XI:463602:464591:1 // ensembl // 11 // --- /// GENEFINDER00000022942 // cdna:GeneFinder chromosome:SGD1:XI:463602:464591:1 // ensembl // 11 // --- /// YKR013W // cdna:known chromosome:SGD1:XI:463602:464591:1 gene:YKR013W // ensembl // 11 // --- --- No cerevisiae_gene 1.90859075951846 -2.1018482184404 -1.46104242561661 -1.69909980623565 1.11671951336762 Max fold change below threshold 4 2.1018482184404 Max fold change at or above threshold 0.658448883550734 -1.02747839652696 -0.664791378453069 1.03382089142929 342.793125152588 134.030856933378 0.390996338895993 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771005_at YMR025W.S1 Subunit of the Cop9 signalosome, which is required for deneddylation, or removal of the ubiquitin-like protein Rub1p from Cdc53p (cullin); involved in adaptation to pheromone signaling 2.10174492875758 203.768981933594 211.007911682129 CSI1 338 // protein deneddylation // inferred from mutant phenotype /// 754 // adaptation to pheromone during conjugation with cellular fusion // inferred from mutant phenotype 8180 // signalosome complex // traceable author statement /// 8180 // signalosome complex // inferred from direct assay --- 197.504013061523 217.080474853516 190.457489013672 224.511810302734 0.00195312988944352 0.0239257998764515 0.0107421996071935 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR025W /GEN=CSI1 /DB_XREF=GI:6323667 /SEG=NC_001145:+323299,324186 /DEF=Subunit of the Cop9 signalosome, which is required for deneddylation, or removal of the ubiquitin-like protein Rub1p from Cdc53p (cullin); involved in adaptation to pheromone signaling /NOTE=Csi1p; go_component: signalosome complex [goid GO:0008180] [evidence TAS] [pmid 12186635]; go_component: signalosome complex [goid GO:0008180] [evidence IDA] [pmid 12446563]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: adaptation to pheromone during conjugation with cellular fusion [goid GO:0000754] [evidence IMP] [pmid 12446563]; go_process: protein deneddylation [goid GO:0000338] [evidence IMP] [pmid 12446563] --- --- --- --- --- --- S0004627 // CSI1 SGDID:S0004627, Chr XIII from 323299-324186, Verified ORF // sgd // 11 // --- /// GENSCAN00000018737 // cdna:Genscan chromosome:SGD1:XIII:323299:324186:1 // ensembl // 11 // --- /// YMR025W // cdna:known chromosome:SGD1:XIII:323299:324186:1 gene:YMR025W // ensembl // 11 // --- --- No cerevisiae_gene 1.11505016794757 1.09911931149416 2.10174492875758 -1.03699788380254 1.13674556188789 Max fold change below threshold 4 2.10174492875758 Max fold change at or above threshold -0.616372470570748 0.604374456306533 -1.05577886933584 1.06777688360005 207.388446807861 16.0364620716839 0.0773257253165175 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1771840_at YEL047C.S1 Fumurate ReDuctase Soluble 2.10139725157657 592.054695129395 563.480499267578 --- 8152 // metabolism // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 16156 // fumarate reductase (NADH) activity // inferred from direct assay 536.642944335938 255.37434387207 928.735046386719 590.318054199219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL047C /GEN=PAU2 /DB_XREF=GI:6320788 /SEG=NC_001137:-65385,66797 /DEF=Fumurate ReDuctase Soluble /NOTE=Yel047cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 8946166]; go_function: fumarate reductase (NADH) activity [goid GO:0016156] [evidence IDA] [pmid 8946166]; go_process: metabolism [goid GO:0008152] [evidence TAS] [pmid 8946166] --- --- --- --- --- --- S0000773 // YEL047C SGDID:S0000773, Chr V from 66797-65385, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016765 // cdna:Genscan chromosome:SGD1:V:65385:66797:-1 // ensembl // 11 // --- /// GENEFINDER00000019635 // cdna:GeneFinder chromosome:SGD1:V:65385:66797:-1 // ensembl // 11 // --- /// YEL047C // cdna:known chromosome:SGD1:V:65385:66797:-1 gene:YEL047C // ensembl // 11 // --- --- No cerevisiae_gene 1.91925601755525 -2.10139725157657 -1.22681046591923 1.73063869783282 1.10002015386544 Max fold change below threshold 4 2.10139725157657 Max fold change at or above threshold -0.148860329323056 -1.16697801734896 1.27040902308531 0.0454293235867107 577.767597198486 276.263347324057 0.478156526367382 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776790_at YOR132W.S1 Subunit of the membrane-associated retromer complex essential for endosome-to-Golgi retrograde protein transport; peripheral membrane protein that assembles onto the membrane with Vps5p to promote vesicle formation 2.10092642520761 2000.60620117188 1774.25836181641 VPS17 42147 // retrograde transport, endosome to Golgi // inferred from physical interaction 5768 // endosome // inferred from physical interaction /// 30904 // retromer complex // traceable author statement --- 1747.63110351563 1933.43872070313 2067.77368164063 1800.88562011719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR132W /GEN=VPS17 /DB_XREF=GI:6324706 /SEG=NC_001147:+573175,574830 /DEF=Peripheral membrane protein required for vacuolar protein sorting /NOTE=Vps17p; go_component: endosome [goid GO:0005768] [evidence IPI] [pmid 9700157]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: retrograde transport, endosome to Golgi [goid GO:0042147] [evidence IPI] [pmid 9700157] --- --- --- --- --- --- S0005658 // VPS17 SGDID:S0005658, Chr XV from 573175-574830, Verified ORF // sgd // 11 // --- /// GENSCAN00000017559 // cdna:Genscan chromosome:SGD1:XV:573175:574830:1 // ensembl // 11 // --- /// GENEFINDER00000022610 // cdna:GeneFinder chromosome:SGD1:XV:573175:574830:1 // ensembl // 11 // --- /// YOR132W // cdna:known chromosome:SGD1:XV:573175:574830:1 gene:YOR132W // ensembl // 11 // --- --- No cerevisiae_gene -2.10092642520761 1.10631970145972 1.03599620133113 1.18318658753611 1.03047240146644 Max fold change below threshold 4 2.10092642520761 Max fold change at or above threshold -0.975033009790004 0.320868518708409 1.25777780071061 -0.603613309629016 1887.43228149414 143.380969233672 0.0759661528731342 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777018_at YJR133W.S1 Xanthine-guanine phosphoribosyl transferase, required for xanthine utilization and for optimal utilization of guanine 2.10084034863877 1669.70361328125 978.695098876953 XPT1 6164 // purine nucleotide biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 310 // xanthine phosphoribosyltransferase activity // inferred from genetic interaction /// 310 // xanthine phosphoribosyltransferase activity // inferred from sequence similarity /// 310 // xanthine phosphoribosyltransferase activity // inferred from mutant phenotype 947.892395019531 1565.17724609375 1774.22998046875 1009.49780273438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR133W /GEN=XPT1 /DB_XREF=GI:6322593 /SEG=NC_001142:+672906,673535 /DEF=Xanthine Phosphoribosyl Transferase /NOTE=Xpt1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: transferase activity, transferring pentosyl groups [goid GO:0016763] [evidence IGI,IMP,ISS] [pmid 10217799]; go_process: purine nucleotide biosynthesis [goid GO:0006164] [evidence TAS] [pmid 10217799] --- --- --- --- --- --- S0003894 // XPT1 SGDID:S0003894, Chr X from 672906-673535, Verified ORF // sgd // 11 // --- /// GENSCAN00000024238 // cdna:Genscan chromosome:SGD1:X:672906:673535:1 // ensembl // 11 // --- /// GENEFINDER00000024492 // cdna:GeneFinder chromosome:SGD1:X:672906:673535:1 // ensembl // 11 // --- /// YJR133W // cdna:known chromosome:SGD1:X:672906:673535:1 gene:YJR133W // ensembl // 11 // --- --- No cerevisiae_gene -2.10084034863877 1.65121827574268 1.08073066860593 1.87176307119986 1.06499198436292 Max fold change below threshold 4 2.10084034863877 Max fold change at or above threshold -0.92061743278092 0.589541170956785 1.10097893733304 -0.769902675508908 1324.1993560791 408.754980798979 0.3086808484859 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778583_at YMR086W.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery 2.10038622249104 1412.26007080078 1320.61169433594 --- --- 5737 // cytoplasm // inferred from direct assay --- 1232.3095703125 1284.48559570313 1540.03454589844 1408.91381835938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR086W /GEN=ADH3 /DB_XREF=GI:6323732 /SEG=NC_001145:+439207,442089 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery /NOTE=Ymr086wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004692 // YMR086W SGDID:S0004692, Chr XIII from 439207-442089, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018783 // cdna:Genscan chromosome:SGD1:XIII:439237:442089:1 // ensembl // 11 // --- /// GENEFINDER00000021973 // cdna:GeneFinder chromosome:SGD1:XIII:439237:442089:1 // ensembl // 11 // --- /// YMR086W // cdna:known chromosome:SGD1:XIII:439207:442089:1 gene:YMR086W // ensembl // 11 // --- --- No cerevisiae_gene -2.10038622249104 1.04234003098539 1.17245014403056 1.24971401910634 1.14331159337024 Max fold change below threshold 4 2.10038622249104 Max fold change at or above threshold -0.97608521164989 -0.596381588028989 1.26333964744695 0.309127152231926 1366.43588256836 137.412503186217 0.100562715703817 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771390_at YLR274W.S1 Component of the hexameric MCM complex, which is important for priming origins of DNA replication in G1 and becomes an active ATP-dependent helicase that promotes DNA melting and elongation when activated by Cdc7p-Dbf4p in S-phase 2.10029814070389 122.518566131592 258.170082092285 CDC46 6267 // pre-replicative complex formation and maintenance // inferred from physical interaction /// 6268 // DNA unwinding // traceable author statement /// 6270 // DNA replication initiation // traceable author statement /// 6343 // establishment of chromatin silencing // inferred from mutant phenotype 5656 // pre-replicative complex // inferred from direct assay /// 5657 // replication fork // inferred from direct assay /// 5737 // cytoplasm // traceable author statement /// 42555 // MCM complex // inferred from direct assay 3682 // chromatin binding // traceable author statement /// 4003 // ATP-dependent DNA helicase activity // traceable author statement 230.061660766602 109.537620544434 135.49951171875 286.278503417969 0.000244141003349796 0.00292969006113708 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR274W /GEN=CDC46 /DB_XREF=GI:6323304 /SEG=NC_001144:+691557,693884 /DEF=Component of the hexameric MCM complex, which is important for priming origins of DNA replication in G1 and becomes an active ATP-dependent helicase that promotes DNA melting and elongation when activated by Cdc7p-Dbf4p in S-phase /NOTE=Cdc46p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 9442876]; go_component: pre-replicative complex [goid GO:0005656] [evidence IDA] [pmid 9335335]; go_component: replication fork [goid GO:0005657] [evidence IDA] [pmid 9335335]; go_function: ATP-dependent DNA helicase activity [goid GO:0004003] [evidence TAS] [pmid 9914182]; go_function: chromatin binding [goid GO:0003682] [evidence TAS] [pmid 9442876]; go_process: DNA replication initiation [goid GO:0006270] [evidence TAS] [pmid 9442876]; go_process: DNA unwinding [goid GO:0006268] [evidence TAS] [pmid 9914182]; go_process: establishment of chromatin silencing [goid GO:0006343] [evidence IMP] [pmid 12750362]; go_process: pre-replicative complex formation and maintenance [goid GO:0006267] [evidence IPI] [pmid 9335335] --- --- --- --- --- --- S0004264 // CDC46 SGDID:S0004264, Chr XII from 691557-693884, Verified ORF // sgd // 11 // --- /// GENSCAN00000018034 // cdna:Genscan chromosome:SGD1:XII:691557:693884:1 // ensembl // 11 // --- /// GENEFINDER00000024696 // cdna:GeneFinder chromosome:SGD1:XII:692364:693884:1 // ensembl // 11 // --- /// YLR274W // cdna:known chromosome:SGD1:XII:691557:693884:1 gene:YLR274W // ensembl // 11 // --- --- No cerevisiae_gene -1.12697510758807 -2.10029814070389 -1.38770338920261 -1.69787815356951 1.24435554565695 Max fold change below threshold 4 2.10029814070389 Max fold change at or above threshold 0.482608329088077 -0.981888300489819 -0.666423418527944 1.16570338992968 190.344324111938 82.2972465678572 0.432359866530402 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777100_at YDR312W.S1 Protein required for ribosomal large subunit maturation, functionally redundant with Ssf1p; member of the Brix family 2.10026056878766 84.5904502868652 166.285095214844 SSF2 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 27 // ribosomal large subunit assembly and maintenance // inferred from sequence similarity /// 747 // conjugation with cellular fusion // inferred from genetic interaction 5730 // nucleolus // inferred from sequence similarity /// 5730 // nucleolus // inferred from direct assay 19843 // rRNA binding // inferred from physical interaction 159.100250244141 75.7526245117188 93.4282760620117 173.469940185547 0.000244141003349796 0.000244140625 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR312W /GEN=SSF2 /DB_XREF=GI:6320518 /SEG=NC_001136:+1087574,1088935 /DEF=high copy suppressor of G beta subunit temperature sensitive mutation /NOTE=Ssf2p; go_component: nucleolus [goid GO:0005730] [evidence ISS] [pmid 11864607]; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 12702244]; go_function: rRNA binding [goid GO:0019843] [evidence IPI] [pmid 11864606]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IGI] [pmid 7748491]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 11864606]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence ISS] [pmid 11864607] --- --- --- --- --- --- S0002720 // SSF2 SGDID:S0002720, Chr IV from 1087576-1088937, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023593 // cdna:GeneFinder chromosome:SGD1:IV:1087576:1088937:1 // ensembl // 10 // --- /// GENSCAN00000025341 // cdna:Genscan chromosome:SGD1:IV:1087576:1088937:1 // ensembl // 10 // --- /// YDR312W // cdna:known chromosome:SGD1:IV:1087576:1088937:1 gene:YDR312W // ensembl // 10 // --- --- No cerevisiae_gene -1.00355394278792 -2.10026056878766 -1.20661437245324 -1.70291326084771 1.09031846222338 Max fold change below threshold 4 2.10026056878766 Max fold change at or above threshold 0.700214788222985 -1.03350312106508 -0.665831056242747 0.999119389084837 125.437772750854 48.0745023662171 0.383253794386983 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774909_at YDR125C.S1 Protein of unknown function, similar to Rlp24p 2.10015887517345 101.110858917236 95.5850448608398 ECM18 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay --- 91.4181747436523 83.831787109375 118.389930725098 99.7519149780273 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR125C /GEN=ECM18 /DB_XREF=GI:6320330 /SEG=NC_001136:-701391,702752 /DEF=Protein of unknown function, similar to Rlp24p /NOTE=Ecm18p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584] --- --- --- --- --- --- S0002532 // ECM18 SGDID:S0002532, Chr IV from 702753-701392, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025190 // cdna:Genscan chromosome:SGD1:IV:701392:702678:-1 // ensembl // 11 // --- /// YDR125C // cdna:known chromosome:SGD1:IV:701392:702753:-1 gene:YDR125C // ensembl // 11 // --- --- No cerevisiae_gene -1.11528777545922 -1.09049535857299 2.10015887517345 1.29503713082303 1.09116065003205 Max fold change below threshold 4 2.10015887517345 Max fold change at or above threshold -0.466360831737303 -0.976910301478762 1.34878708558035 0.0944840476357132 98.3479518890381 14.8592606278077 0.151088663692486 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776113_at SPCC1442.06.S1 --- 2.09913541973609 --- --- --- --- 7.46493864059448 15.6699171066284 6.45915699005127 4.76147985458374 0.149657994508743 0.014160200022161 0.0952147990465164 0.0461426004767418 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1442.06 /DEF=20S proteasome component (alpha 2) --- --- --- --- --- --- SPCC1442.06 // |||20S proteasome component |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.89651888582637 2.09913541973609 -1.00941212912105 -1.15571407415741 -1.56777700810982 Max fold change below threshold 4 2.09913541973609 Max fold change at or above threshold AAPPAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1772239_at YNL002C.S1 Nucleolar protein with similarity to large ribosomal subunit L7 proteins; constituent of 66S pre-ribosomal particles; plays an essential role in processing of precursors to the large ribosomal subunit RNAs 2.09892131069338 1165.86560058594 986.181243896484 RLP7 30489 // processing of 27S pre-rRNA // inferred from mutant phenotype /// 42273 // ribosomal large subunit biogenesis // inferred from mutant phenotype 5730 // nucleolus // inferred from direct assay 19843 // rRNA binding // inferred from sequence similarity 1014.61273193359 1141.19567871094 1190.53552246094 957.749755859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL002C /GEN=RLP7 /DB_XREF=GI:6324326 /SEG=NC_001146:-626173,627141 /DEF=Significant sequence similarity to RPL7B, but neither can functionally replace the other. Does not correspond to any ribosomal component identified so far, based on its biochemical features /NOTE=Rlp7p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11087857]; go_function: rRNA binding [goid GO:0019843] [evidence ISS] [pmid 11087857]; go_process: processing of 27S pre-rRNA [goid GO:0030489] [evidence IMP] [pmid 11087857]; go_process: ribosomal large subunit biogenesis [goid GO:0042273] [evidence IMP] [pmid 11087857] --- --- --- --- --- --- S0004947 // RLP7 SGDID:S0004947, Chr XIV from 627142-626174, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020600 // cdna:GeneFinder chromosome:SGD1:XIV:626174:627142:-1 // ensembl // 11 // --- /// YNL002C // cdna:known chromosome:SGD1:XIV:626174:627142:-1 gene:YNL002C // ensembl // 11 // --- --- No cerevisiae_gene 2.09892131069338 1.12475986432391 -1.11896781817695 1.17338910205875 -1.05937143364051 Max fold change below threshold 4 2.09892131069338 Max fold change at or above threshold -0.567577304359803 0.602342905784679 1.05835757314766 -1.09312317457253 1076.02342224121 108.197931516809 0.100553509598748 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770832_at YDR364C.S1 Pre-mRNA splicing factor, important for catalytic step II of pre-mRNA splicing and plays a role in cell cycle progression; required for DNA synthesis during mitosis and meiosis; has WD repeats 2.09865817830904 379.098037719727 702.767425537109 CDC40 84 // S phase of mitotic cell cycle // inferred from direct assay /// 398 // nuclear mRNA splicing, via spliceosome // inferred from mutant phenotype /// 6260 // DNA replication // traceable author statement /// 30472 // mitotic spindle organization and biogenesis in nucleus // traceable author statement 5635 // nuclear membrane // inferred from direct assay /// 5643 // nuclear pore // inferred from direct assay /// 5681 // spliceosome complex // inferred from genetic interaction 3676 // nucleic acid binding // inferred from physical interaction /// 31202 // RNA splicing factor activity, transesterification mechanism // traceable author statement 658.038024902344 313.551788330078 444.644287109375 747.496826171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR364C /GEN=CDC40 /DB_XREF=GI:6320572 /SEG=NC_001136:-1202831,1204198 /DEF=Pre-mRNA splicing factor, important for catalytic step II of pre-mRNA splicing and plays a role in cell cycle progression; required for DNA synthesis during mitosis and meiosis; has WD repeats /NOTE=Cdc40p; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 9862477]; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9862477]; go_component: spliceosome complex [goid GO:0005681] [evidence IGI] [pmid 10628969]; go_function: nucleic acid binding [goid GO:0003676] [evidence IPI] [pmid 9769104]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence TAS] [pmid 11565750]; go_process: DNA replication [goid GO:0006260] [evidence TAS] [pmid 10628969]; go_process: S phase of mitotic cell cycle [goid GO:0000084] [evidence IDA] [pmid 9862477]; go_process: mitotic spindle assembly (sensu Fungi) [goid GO:0030472] [evidence TAS] [pmid 10628969]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IMP] [pmid 10628969] --- --- --- --- --- --- S0002772 // CDC40 SGDID:S0002772, Chr IV from 1204200-1202833, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023510 // cdna:GeneFinder chromosome:SGD1:IV:1202833:1204200:-1 // ensembl // 11 // --- /// GENSCAN00000025387 // cdna:Genscan chromosome:SGD1:IV:1202833:1204200:-1 // ensembl // 11 // --- /// YDR364C // cdna:known chromosome:SGD1:IV:1202833:1204200:-1 gene:YDR364C // ensembl // 11 // --- --- No cerevisiae_gene -1.45272425505453 -2.09865817830904 1.45318656061262 -1.47992011587563 1.13594776879772 Max fold change below threshold 4 2.09865817830904 Max fold change at or above threshold 0.592085776860325 -1.14964079498195 -0.486835538188466 1.0443905563101 540.932731628418 197.78433776083 0.365635736564549 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
RPTR-Sc-U47295-1_at AFFX-Sc-U47295-1 --- 2.09844809596395 --- --- --- --- 6.4254093170166 13.4833879470825 11.8806381225586 3.90533757209778 0.14453125 0.0375977009534836 0.030273400247097 0.194580003619194 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL U47295 /FEA=CDS_1 /DB_XREF=AAA89082.1 GI:1200460 /PROD=luciferase /GEN=luc+ --- --- --- --- --- --- AFFX-Sc-U47295-1 // --- // affx // --- // --- --- No No 1.29059002334683 2.09844809596395 1.17232220116274 1.84900876137101 -1.64528909432153 Max fold change below threshold 4 2.09844809596395 Max fold change at or above threshold AAPPPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1774884_at SPAC1399.05c.S1 --- 2.0981934909918 --- --- --- --- 0.678169786930084 0.429392278194427 0.600615739822388 1.422931432724 0.780517995357513 0.828612983226776 0.850341975688934 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1399.05c /DEF=zinc finger protein --- --- --- --- --- --- SPAC1399.05c // |||transcription factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.7678758839252 -1.5793711749586 2.07211077078954 -1.12912423362503 2.0981934909918 Max fold change below threshold 0 2.0981934909918 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775611_at YJR132W.S1 Karyopherin, a carrier protein involved in nuclear import of proteins; importin beta homolog 2.09810981536757 235.847770690918 246.356536865234 NMD5 6606 // protein-nucleus import // inferred from sequence similarity /// 6606 // protein-nucleus import // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8320 // protein carrier activity // inferred from sequence similarity /// 8320 // protein carrier activity // inferred from mutant phenotype 219.173919677734 195.733505249023 275.962036132813 273.539154052734 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR132W /GEN=NMD5 /DB_XREF=GI:6322592 /SEG=NC_001142:+669437,672583 /DEF=Involved in nuclear import /NOTE=Nmd5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9852143]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9852143]; go_function: protein carrier activity [goid GO:0008320] [evidence IMP,ISS] [pmid 9755161]; go_process: protein-nucleus import [goid GO:0006606] [evidence IMP,ISS] [pmid 9755161] --- --- --- --- --- --- S0003893 // NMD5 SGDID:S0003893, Chr X from 669437-672583, Verified ORF // sgd // 11 // --- /// GENSCAN00000024237 // cdna:Genscan chromosome:SGD1:X:669437:672583:1 // ensembl // 11 // --- /// YJR132W // cdna:known chromosome:SGD1:X:669437:672583:1 gene:YJR132W // ensembl // 11 // --- --- No cerevisiae_gene 2.09810981536757 -1.11975678052099 1.40770891677415 1.25910070202959 1.24804609259595 Max fold change below threshold 4 2.09810981536757 Max fold change at or above threshold -0.5478332184126 -1.13344524802905 0.870904672783576 0.810373793658077 241.102153778076 40.0272078496462 0.166017628720519 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775587_at YOR296W.S1 Hypothetical protein 2.09804814055806 93.3549385070801 156.797096252441 --- --- 5737 // cytoplasm // inferred from direct assay --- 150.373413085938 71.6730041503906 115.03687286377 163.220779418945 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR296W /GEN=UAF30 /DB_XREF=GI:6324870 /SEG=NC_001147:+870199,874068 /DEF=Hypothetical ORF /NOTE=Yor296wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005822 // YOR296W SGDID:S0005822, Chr XV from 870199-874068, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000017747 // cdna:Genscan chromosome:SGD1:XV:870199:874068:1 // ensembl // 10 // --- /// GENEFINDER00000022701 // cdna:GeneFinder chromosome:SGD1:XV:870589:874068:1 // ensembl // 10 // --- /// YOR296W // cdna:known chromosome:SGD1:XV:870199:874068:1 gene:YOR296W // ensembl // 10 // --- --- No cerevisiae_gene -1.14022034596042 -2.09804814055806 1.28061703896306 -1.30717577192849 1.08543642170086 Max fold change below threshold 4 2.09804814055806 Max fold change at or above threshold 0.616725547022145 -1.30191277114239 -0.244744437932293 0.929931662052536 125.076017379761 41.018887296505 0.327951658166104 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780084_at YDR026C.S1 Hypothetical protein 2.09800850537977 129.668346405029 227.847808837891 --- --- 5634 // nucleus // inferred from curator /// 5730 // nucleolus // inferred from direct assay 3677 // DNA binding // inferred from physical interaction 249.005767822266 118.686729431152 140.649963378906 206.689849853516 0.000732421991415322 0.00195312988944352 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR026C /GEN=RPS11A /DB_XREF=GI:6320229 /SEG=NC_001136:-492552,494264 /DEF=Hypothetical ORF /NOTE=Ydr026cp; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.1.Myb // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb // 1.39999997615814 /// scop // a.4.1.Myb // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb // 9.0000003183377E-6 --- S0002433 // YDR026C SGDID:S0002433, Chr IV from 494264-492552, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023909 // cdna:GeneFinder chromosome:SGD1:IV:492552:494096:-1 // ensembl // 11 // --- /// GENSCAN00000025116 // cdna:Genscan chromosome:SGD1:IV:492552:494096:-1 // ensembl // 11 // --- /// YDR026C // cdna:known chromosome:SGD1:IV:492552:494264:-1 gene:YDR026C // ensembl // 11 // --- --- No cerevisiae_gene -1.56740507377748 -2.09800850537977 1.0020704900507 -1.77039340672598 -1.20473147568078 Max fold change below threshold 4 2.09800850537977 Max fold change at or above threshold 1.17211327645661 -1.00231658218564 -0.635850467349745 0.466053773078776 178.75807762146 59.9325096062132 0.335271616274185 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770230_at YGR204C-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 2.09781971631023 235.624900817871 153.226432800293 --- --- --- --- 145.350448608398 246.692352294922 224.55744934082 161.102416992188 0.000732421991415322 0.00195312988944352 0.00292969006113708 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR204C-A /GEN=ADE3 /DB_XREF=GI:33438800 /SEG=NC_001139:-909064,909177 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ygr204c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028640 // YGR204C-A SGDID:S0028640, Chr VII from 909179-909066, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YGR204C-A // cdna:known chromosome:SGD1:VII:909066:909179:-1 gene:YGR204C-A // ensembl // 11 // --- --- No cerevisiae_gene 2.09781971631023 1.69722456763486 1.1639224551468 1.544938123623 1.10837234101855 Max fold change below threshold 4 2.09781971631023 Max fold change at or above threshold -1.00463992629249 1.06997382750945 0.616840696621199 -0.68217459783816 194.425666809082 48.8485644620854 0.25124545161032 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778863_at YLR118C.S1 --- 2.09762503722728 342.151565551758 631.001861572266 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 16788 // hydrolase activity, acting on ester bonds // inferred from direct assay /// 16788 // hydrolase activity, acting on ester bonds // inferred from sequence similarity /// 16788 // hydrolase activity, acting on ester bonds // inferred from mutant phenotype 617.106140136719 294.192779541016 390.1103515625 644.897583007813 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR118C /GEN=CLF1 /DB_XREF=GI:6323147 /SEG=NC_001144:-384726,385409 /DEF=Ylr118cp /NOTE=go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: hydrolase activity, acting on ester bonds [goid GO:0016788] [evidence IDA,IMP,ISS] [pmid 12080046]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004108 // YLR118C SGDID:S0004108, Chr XII from 385409-384726, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017912 // cdna:Genscan chromosome:SGD1:XII:384726:385409:-1 // ensembl // 11 // --- /// GENEFINDER00000024892 // cdna:GeneFinder chromosome:SGD1:XII:384726:385409:-1 // ensembl // 11 // --- /// YLR118C // cdna:known chromosome:SGD1:XII:384726:385409:-1 gene:YLR118C // ensembl // 11 // --- --- No cerevisiae_gene -1.7351240943756 -2.09762503722728 1.82312462669377 -1.58187584016942 1.04503510994873 Max fold change below threshold 4 2.09762503722728 Max fold change at or above threshold 0.760312133202727 -1.12060431971422 -0.561900464890017 0.922192651401506 486.576713562012 171.678736764159 0.352829742934829 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770995_at YBR077C.S1 Component of the EGO complex, which is involved in the regulation of microautophagy; gene exhibits synthetic genetic interaction with MSS4 encoding phosphatidylinositol 4-phosphate kinase 2.09743940858773 1515.79315185547 843.722320556641 SLM4 7165 // signal transduction // inferred from mutant phenotype /// 16237 // microautophagy // inferred from mutant phenotype 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5774 // vacuolar membrane // inferred from direct assay 43325 // phosphatidylinositol-3,4-bisphosphate binding // traceable author statement 772.795959472656 1410.69360351563 1620.89270019531 914.648681640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR077C /GEN=ECM8 /DB_XREF=GI:6319551 /SEG=NC_001134:-391762,392250 /DEF=Hypothetical ORF /NOTE=Ybr077cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 0.810000002384186 --- S0000281 // YBR077C SGDID:S0000281, Chr II from 392287-391799, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021200 // cdna:Genscan chromosome:SGD1:II:391799:392287:-1 // ensembl // 11 // --- /// YBR077C // cdna:known chromosome:SGD1:II:391799:392287:-1 gene:YBR077C // ensembl // 11 // --- --- No cerevisiae_gene 1.54562279365405 1.82544122575157 1.43513231342696 2.09743940858773 1.18355779482176 Max fold change below threshold 4 2.09743940858773 Max fold change at or above threshold -1.01336732193234 0.575048750946777 1.09846128709371 -0.66014271610815 1179.75773620605 401.593546511232 0.340403401636258 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771898_at SPBC685.03.S1 --- 2.09659961804376 --- --- --- --- 12.8028059005737 6.10646200180054 10.3467769622803 9.94674396514893 0.0107421996071935 0.274170011281967 0.00805663969367743 0.018554700538516 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC685.03 /DEF=serine-rich protein --- --- --- --- --- --- SPBC685.03 // |||serine-rich protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.27387849341906 -2.09659961804376 -1.66772115259432 -1.23737140050926 -1.2871353626304 Max fold change below threshold 4 2.09659961804376 Max fold change at or above threshold PAAAPP No 4 0 PAPP 1 3 0 No No 2 < x = 3
1779817_at YPR057W.S1 snRNP protein component of spliceosomal snRNPs, required for pre-mRNA splicing and snRNP biogenesis; in null mutant newly-synthesized snRNAs are destabilized and 3'-end processing is slowed 2.09529968342486 384.208786010742 821.775939941406 BRR1 245 // spliceosome assembly // inferred from mutant phenotype 30532 // small nuclear ribonucleoprotein complex // inferred from direct assay 3723 // RNA binding // inferred from physical interaction 790.448608398438 377.248474121094 391.169097900391 853.103271484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR057W /GEN=BRR1 /DB_XREF=GI:6325314 /SEG=NC_001148:+672466,673491 /DEF=Protein involved in snRNP biogenesis /NOTE=Brr1p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence IDA] [pmid 8861964]; go_function: RNA binding [goid GO:0003723] [evidence IPI] [pmid 8861964]; go_process: spliceosome assembly [goid GO:0000245] [evidence IMP] [pmid 8861964] --- --- --- --- --- --- S0006261 // BRR1 SGDID:S0006261, Chr XVI from 672468-673493, Verified ORF // sgd // 11 // --- /// GENSCAN00000017229 // cdna:Genscan chromosome:SGD1:XVI:672468:673493:1 // ensembl // 11 // --- /// GENEFINDER00000020970 // cdna:GeneFinder chromosome:SGD1:XVI:672468:673493:1 // ensembl // 11 // --- /// YPR057W // cdna:known chromosome:SGD1:XVI:672468:673493:1 gene:YPR057W // ensembl // 11 // --- --- No cerevisiae_gene 1.79630939153143 -2.09529968342486 -1.19738320929925 -2.02073377636728 1.079264688963 Max fold change below threshold 4 2.09529968342486 Max fold change at or above threshold 0.738061122729781 -0.888808946761381 -0.83400004352907 0.984747867560671 602.992362976074 253.984717050318 0.421207187097319 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772107_at SPAC1093.02.S1 --- 2.09528298509392 --- --- --- --- 5.72108173370361 8.08657932281494 8.49502372741699 5.66523313522339 0.398925989866257 0.366210997104645 0.129638999700546 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1093.02 /DEF=pyridoxamine 5-phosphate oxidase (predicted) --- --- --- --- --- --- SPAC1093.02 // |||pyridoxamine 5'-phosphate oxidase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.027461744364 1.41347033641835 -2.09528298509392 1.48486319944911 -1.00985812889729 Max fold change below threshold 4 2.09528298509392 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771376_at YLR231C.S1 Kynureninase, required for biosynthesis of nicotinic acid from tryptophan via kynurenine pathway 2.09496068784521 599.645629882813 358.600967407227 BNA5 9435 // NAD biosynthesis // inferred from direct assay /// 9435 // NAD biosynthesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 30429 // kynureninase activity // inferred from direct assay 336.358093261719 494.63427734375 704.656982421875 380.843841552734 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR231C /GEN=BNA5 /DB_XREF=GI:6323261 /SEG=NC_001144:-605760,607121 /DEF=Kynureninase, required for biosynthesis of nicotinic acid from tryptophan via kynurenine pathway /NOTE=Bna5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: kynureninase activity [goid GO:0030429] [evidence IDA] [pmid 12062417]; go_process: NAD biosynthesis [goid GO:0009435] [evidence IDA,IMP] [pmid 12062417] --- --- --- --- --- --- S0004221 // BNA5 SGDID:S0004221, Chr XII from 607121-605760, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018001 // cdna:Genscan chromosome:SGD1:XII:605760:607121:-1 // ensembl // 11 // --- /// GENEFINDER00000024874 // cdna:GeneFinder chromosome:SGD1:XII:605760:607121:-1 // ensembl // 11 // --- /// YLR231C // cdna:known chromosome:SGD1:XII:605760:607121:-1 gene:YLR231C // ensembl // 11 // --- --- No cerevisiae_gene -2.08193625790529 1.47055857210749 1.96757747522134 2.09496068784521 1.13225710688163 Max fold change below threshold 4 2.09496068784521 Max fold change at or above threshold -0.868055180722569 0.094311393181278 1.37131230333273 -0.597568515791443 479.12329864502 164.465587619053 0.343263598502032 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769580_at YJL186W.S1 Alpha-1,2-mannosyltransferase, responsible for addition of the second alpha-1,2-linked mannose of the branches on the mannan backbone of oligosaccharides, localizes to an early Golgi compartment 2.09441495626583 367.082717895508 715.001373291016 MNN5 6486 // protein amino acid glycosylation // inferred from mutant phenotype 5794 // Golgi apparatus // inferred from direct assay 26 // alpha-1,2-mannosyltransferase activity // inferred from mutant phenotype 615.939392089844 294.086608886719 440.078826904297 814.063354492188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL186W /GEN=MNN5 /DB_XREF=GI:6322275 /SEG=NC_001142:+80153,81913 /DEF=Alpha-1,2-mannosyltransferase, responsible for addition of the second alpha-1,2-linked mannose of the branches on the mannan backbone of oligosaccharides, localizes to an early Golgi compartment /NOTE=Mnn5p; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 9756928]; go_function: alpha-1,2-mannosyltransferase activity [goid GO:0000026] [evidence IMP] [pmid 9756928]; go_process: protein amino acid glycosylation [goid GO:0006486] [evidence IMP] [pmid 9756928] --- --- --- --- --- S0003722 // span:13-35 // numtm:1 S0003722 // MNN5 SGDID:S0003722, Chr X from 80153-81913, Verified ORF // sgd // 11 // --- /// GENSCAN00000023997 // cdna:Genscan chromosome:SGD1:X:80153:81913:1 // ensembl // 11 // --- /// GENEFINDER00000024429 // cdna:GeneFinder chromosome:SGD1:X:80153:81913:1 // ensembl // 11 // --- /// YJL186W // cdna:known chromosome:SGD1:X:80153:81913:1 gene:YJL186W // ensembl // 11 // --- --- No cerevisiae_gene 1.28306857885374 -2.09441495626583 1.26555164810642 -1.39961151147086 1.32166145719325 Max fold change below threshold 4 2.09441495626583 Max fold change at or above threshold 0.333475079745129 -1.0995514234001 -0.449531511842865 1.21560785549784 541.042045593262 224.596532232109 0.415118444234469 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-Scv2-r2-Ec-bioC-3_at AFFX-Scv2-r2-Ec-bioC-3 --- 2.09435151684048 --- --- --- --- 855.008972167969 1039.77795410156 408.245208740234 422.343322753906 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4608-4883 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --- --- --- --- --- --- AFFX-Scv2-r2-Ec-bioC-3 // --- // affx // --- // --- --- AFFX_control No -1.65086977124643 1.21610180471568 -1.65634974583896 -2.09435151684048 -2.02444060579163 Max fold change below threshold 4 2.09435151684048 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770092_at YDR266C.S1 Hypothetical protein 2.09430822245589 423.511810302734 897.458526611328 --- --- 5737 // cytoplasm // inferred from direct assay --- 838.447937011719 400.346008300781 446.677612304688 956.469116210938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR266C /GEN=PEX10 /DB_XREF=GI:6320472 /SEG=NC_001136:-1000096,1002015 /DEF=Hypothetical ORF /NOTE=Ydr266cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002674 // YDR266C SGDID:S0002674, Chr IV from 1002017-1000098, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025309 // cdna:Genscan chromosome:SGD1:IV:1000098:1001474:-1 // ensembl // 11 // --- /// YDR266C // cdna:known chromosome:SGD1:IV:1000098:1002017:-1 gene:YDR266C // ensembl // 11 // --- --- No cerevisiae_gene -1.69101154750331 -2.09430822245589 -1.13834001495067 -1.87707624898782 1.14076148797009 Max fold change below threshold 4 2.09430822245589 Max fold change at or above threshold 0.639036759292691 -0.934119463421854 -0.767749844001204 1.06283254813037 660.485168457031 278.485964957107 0.421638483734134 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774889_at YDR160W.S1 Component of the SPS plasma membrane amino acid sensor system (Ssy1p-Ptr3p-Ssy5p), which senses external amino acid concentration and transmits intracellular signals that result in regulation of expression of amino acid permease genes 2.09392884465334 170.400291442871 330.651657104492 SSY1 7606 // sensory perception of chemical stimulus // inferred from genetic interaction /// 7606 // sensory perception of chemical stimulus // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay 16597 // amino acid binding // inferred from genetic interaction /// 16597 // amino acid binding // inferred from mutant phenotype 293.602142333984 140.215911865234 200.584671020508 367.701171875 0.000732421991415322 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR160W /GEN=SSY1 /DB_XREF=GI:6320364 /SEG=NC_001136:+776157,778715 /DEF=Component of the SPS plasma membrane amino acid sensor system (Ssy1p-Ptr3p-Ssy5p), which senses external amino acid concentration and transmits intracellular signals that result in regulation of expression of amino acid permease genes /NOTE=Ssy1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 10409731]; go_function: amino acid binding [goid GO:0016597] [evidence IGI,IMP] [pmid 10409731]; go_process: sensory perception of chemical stimulus [goid GO:0007606] [evidence IGI,IMP] [pmid 10409731] --- --- --- --- --- S0002567 // span:288-310,325-347,359-381,396-415,422-444,500-522,542-561,633-655,675-694,709-731,754-776,786-805 // numtm:12 S0002567 // SSY1 SGDID:S0002567, Chr IV from 776158-778716, Verified ORF // sgd // 11 // --- /// YDR160W // cdna:known chromosome:SGD1:IV:776158:778716:1 gene:YDR160W // ensembl // 11 // --- --- No cerevisiae_gene -1.64714389343644 -2.09392884465334 1.07133598142765 -1.46373170412392 1.25237904925341 Max fold change below threshold 4 2.09392884465334 Max fold change at or above threshold 0.428991972239809 -1.09856872979624 -0.497361282201639 1.16693803975807 250.525974273682 100.412527151494 0.400806852234014 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777376_at YKR093W.S1 Integral membrane peptide transporter, mediates transport of di- and tri-peptides; conserved protein that contains 12 transmembrane domains; PTR2 expression is regulated by the N-end rule pathway via repression by Cup9p 2.09378144469752 887.011047363281 1400.06915283203 PTR2 15833 // peptide transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from mutant phenotype 15197 // peptide transporter activity // inferred from sequence similarity /// 15197 // peptide transporter activity // inferred from mutant phenotype 1316.62609863281 684.572265625 1089.44982910156 1483.51220703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR093W /GEN=PTR2 /DB_XREF=GI:6322946 /SEG=NC_001143:+615370,617175 /DEF=Functions in transport of small peptides into the cell /NOTE=Ptr2p; go_component: plasma membrane [goid GO:0005886] [evidence IMP,ISS] [pmid 8264579]; go_function: peptide transporter activity [goid GO:0015197] [evidence IMP,ISS] [pmid 8264579]; go_process: peptide transport [goid GO:0015833] [evidence IMP] [pmid 8264579] --- --- --- --- --- S0001801 // span:126-148,155-177,190-212,232-254,269-291,354-376,389-411,424-446,466-488,501-520,530-552 // numtm:11 S0001801 // PTR2 SGDID:S0001801, Chr XI from 615372-617177, Verified ORF // sgd // 11 // --- /// GENSCAN00000018495 // cdna:Genscan chromosome:SGD1:XI:615372:617177:1 // ensembl // 11 // --- /// GENEFINDER00000023181 // cdna:GeneFinder chromosome:SGD1:XI:615372:617177:1 // ensembl // 11 // --- /// YKR093W // cdna:known chromosome:SGD1:XI:615372:617177:1 gene:YKR093W // ensembl // 11 // --- --- No cerevisiae_gene 2.09378144469752 -1.92328285083352 1.29897315924891 -1.20852384704911 1.12675284849034 Max fold change below threshold 4 2.09378144469752 Max fold change at or above threshold 0.500270122930181 -1.32655383402371 -0.156337004434512 0.982620715528046 1143.54010009766 345.985080063062 0.30255614126126 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778607_at SPAP7G5.06.S1 --- 2.09375888528895 --- --- --- --- 9.10144233703613 4.34693908691406 6.90986585617065 10.9209403991699 0.274170011281967 0.5 0.129638999700546 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP7G5.06 /DEF=amino acid permease family --- --- --- --- --- --- SPAP7G5.06 // |||amino acid permease family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.24099030612705 -2.09375888528895 1.2812628293401 -1.31716628462597 1.19991315604229 Max fold change below threshold 4 2.09375888528895 Max fold change at or above threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1771833_at YOL038C-A.S1 Identified by SAGE 2.09367550647275 83.4165344238281 55.8359813690186 --- --- --- --- 53.2807807922363 111.552665710449 55.280403137207 58.3911819458008 0.00415039015933871 0.00195312988944352 0.00195312988944352 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL038C-A /GEN=RPP2A /DB_XREF=GI:33438876 /SEG=NC_001147:-254924,255019 /DEF=Identified by SAGE /NOTE=Yol038c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028812 // YOL038C-A SGDID:S0028812, Chr XV from 255019-254924, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YOL038C-A // cdna:known chromosome:SGD1:XV:254924:255019:-1 gene:YOL038C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.89797137400905 2.09367550647275 -1.39797894529498 1.03752989943537 1.09591453198653 Max fold change below threshold 4 2.09367550647275 Max fold change at or above threshold -0.583143966814561 1.49577351649731 -0.511805106593799 -0.400824443088948 69.6262578964233 28.0299171977627 0.402576815767699 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774693_at YNL308C.S1 Essential nucleolar protein required for 40S ribosome biogenesis; physically and functionally interacts with Krr1p 2.09359806543069 593.893966674805 1077.46255493164 KRI1 7046 // ribosome biogenesis // inferred from direct assay 5730 // nucleolus // inferred from direct assay --- 1005.39788818359 480.224884033203 707.563049316406 1149.52722167969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL308C /GEN=KRI1 /DB_XREF=GI:6324021 /SEG=NC_001146:-54121,55896 /DEF=KRRI-Interacting protein 1 /NOTE=Kri1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11027267]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ribosome biogenesis [goid GO:0007046] [evidence IDA] [pmid 11027267] --- --- --- --- --- --- S0005252 // KRI1 SGDID:S0005252, Chr XIV from 55896-54121, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020646 // cdna:GeneFinder chromosome:SGD1:XIV:54121:55896:-1 // ensembl // 11 // --- /// YNL308C // cdna:known chromosome:SGD1:XIV:54121:55896:-1 gene:YNL308C // ensembl // 11 // --- --- No cerevisiae_gene 1.42482373132479 -2.09359806543069 -1.19323494671224 -1.42093045864242 1.14335551644781 Max fold change below threshold 4 2.09359806543069 Max fold change at or above threshold 0.565662401099978 -1.18469863318872 -0.426998098367529 1.04603433045627 835.678260803223 300.036960297055 0.359034061755622 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778723_at YOR181W.S1 Actin assembly factor, activates the Arp2/3 protein complex that nucleates branched actin filaments; localizes with the Arp2/3 complex to actin patches; homolog of the human Wiskott-Aldrich syndrome protein (WASP) 2.09356333672139 357.798751831055 663.316467285156 LAS17 910 // cytokinesis // inferred from mutant phenotype /// 6897 // endocytosis // inferred from mutant phenotype /// 6970 // response to osmotic stress // inferred from mutant phenotype /// 7015 // actin filament organization // inferred from direct assay /// 7121 // bipolar bud site selection // inferred from mutant phenotype /// 8154 // actin polymerization and/or depolymerization // inferred from direct assay 5737 // cytoplasm // inferred from direct assay /// 30479 // actin cortical patch // inferred from direct assay 8092 // cytoskeletal protein binding // inferred from direct assay 660.454895019531 315.469268798828 400.128234863281 666.178039550781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR181W /GEN=LAS17 /DB_XREF=GI:6324755 /SEG=NC_001147:+675939,677840 /DEF=Homolog of human WASP, proline-rich protein /NOTE=Las17p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10512884]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: cytoskeletal protein binding [goid GO:0008092] [evidence IDA] [pmid 9214384]; go_process: actin filament organization [goid GO:0007015] [evidence IDA] [pmid 9214384]; go_process: actin polymerization and/or depolymerization [goid GO:0008154] [evidence IDA] [pmid 9214384]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 10652251]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251]; go_process: response to osmotic stress [goid GO:0006970] [evidence IMP] [pmid 10652251] --- --- --- --- --- --- S0005707 // LAS17 SGDID:S0005707, Chr XV from 675939-677840, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022715 // cdna:GeneFinder chromosome:SGD1:XV:675939:677840:1 // ensembl // 11 // --- /// GENSCAN00000017600 // cdna:Genscan chromosome:SGD1:XV:676230:677840:1 // ensembl // 11 // --- /// YOR181W // cdna:known chromosome:SGD1:XV:675939:677840:1 gene:YOR181W // ensembl // 11 // --- --- No cerevisiae_gene -1.85309539862324 -2.09356333672139 -1.1890403917312 -1.65060807379714 1.00866545857167 Max fold change below threshold 4 2.09356333672139 Max fold change at or above threshold 0.833874318471459 -1.08527086859244 -0.614315457944518 0.865712008065497 510.557609558105 179.760045538033 0.352085723868885 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772496_at YPR128C.S1 Peroxisomal adenine nucleotide transporter; involved in beta-oxidation of medium-chain fatty acid; required for peroxisome proliferation 2.09291870514839 517.107467651367 1005.66680908203 ANT1 6635 // fatty acid beta-oxidation // inferred from mutant phenotype /// 6635 // fatty acid beta-oxidation // inferred from genetic interaction /// 7031 // peroxisome organization and biogenesis // inferred from mutant phenotype /// 15867 // ATP transport // inferred from direct assay 5737 // cytoplasm // inferred from direct assay /// 5779 // integral to peroxisomal membrane // inferred from direct assay 295 // adenine nucleotide transporter activity // inferred from direct assay /// 295 // adenine nucleotide transporter activity // inferred from mutant phenotype 972.3662109375 464.598175048828 569.616760253906 1038.96740722656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR128C /GEN=ANT1 /DB_XREF=GI:6325385 /SEG=NC_001148:-791212,792198 /DEF=adenine nucleotide transporter /NOTE=Ant1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: integral to peroxisomal membrane [goid GO:0005779] [evidence IDA] [pmid 11566870]; go_function: adenine nucleotide transporter activity [goid GO:0000295] [evidence IMP] [pmid 11390660]; go_function: adenine nucleotide transporter activity [goid GO:0000295] [evidence IDA] [pmid 11566870]; go_process: ATP transport [goid GO:0015867] [evidence IDA] [pmid 11566870]; go_process: fatty acid beta-oxidation [goid GO:0006635] [evidence IGI,IMP] [pmid 11566870]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence IMP] [pmid 11390660] --- --- --- --- --- S0006332 // span:73-95 // numtm:1 S0006332 // ANT1 SGDID:S0006332, Chr XVI from 792200-791214, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017280 // cdna:Genscan chromosome:SGD1:XVI:791214:792155:-1 // ensembl // 11 // --- /// YPR128C // cdna:known chromosome:SGD1:XVI:791214:792200:-1 gene:YPR128C // ensembl // 11 // --- --- No cerevisiae_gene 1.30744521709787 -2.09291870514839 1.03595920420045 -1.70705337129488 1.06849394347511 Max fold change below threshold 4 2.09291870514839 Max fold change at or above threshold 0.736138937768236 -1.03554304953557 -0.669116802530215 0.96852091429755 761.387138366699 286.602245508748 0.37642118058831 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770483_at YMR280C.S1 Zinc cluster transcriptional activator necessary for derepression of a variety of genes under non-fermentative growth conditions, active after diauxic shift, binds carbon source responsive elements 2.09284666578143 2934.56140136719 1983.96838378906 CAT8 45722 // positive regulation of gluconeogenesis // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from curator 3704 // specific RNA polymerase II transcription factor activity // inferred from direct assay 1993.22900390625 3052.6611328125 2816.46166992188 1974.70776367188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR280C /GEN=CAT8 /DB_XREF=GI:6323936 /SEG=NC_001145:-827027,831328 /DEF=CAT8 controls the key enzymes of gluconeogenesis in S. cerevisiae. /NOTE=Cat8p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 9111319]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IDA] [pmid 9111319]; go_process: gluconeogenesis [goid GO:0006094] [evidence IMP] [pmid 7891685]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IDA] [pmid 9111319] --- --- --- --- --- --- S0004893 // CAT8 SGDID:S0004893, Chr XIII from 831328-827027, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018949 // cdna:Genscan chromosome:SGD1:XIII:827027:831328:-1 // ensembl // 10 // --- /// GENEFINDER00000022012 // cdna:GeneFinder chromosome:SGD1:XIII:827027:829927:-1 // ensembl // 10 // --- /// YMR280C // cdna:known chromosome:SGD1:XIII:827027:831328:-1 gene:YMR280C // ensembl // 10 // --- --- No cerevisiae_gene -2.09284666578143 1.53151550917131 1.30506698336384 1.4130145931061 -1.00937923098045 Max fold change below threshold 4 2.09284666578143 Max fold change at or above threshold -0.836264018599771 1.06480195311692 0.640960963979938 -0.869498898497091 2459.26489257813 557.283200408645 0.226605601572439 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769809_at YDL012C.S1 Plasma membrane protein of unknown function 2.09198699608134 771.190185546875 675.109191894531 --- --- 5886 // plasma membrane // inferred from direct assay --- 608.083679199219 722.998901367188 819.381469726563 742.134704589844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL012C /GEN=HEX3 /DB_XREF=GI:6320192 /SEG=NC_001136:-431105,431514 /DEF=Plasma membrane protein of unknown function /NOTE=Ydl012cp; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12514182]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002170 // YDL012C SGDID:S0002170, Chr IV from 431514-431470,431383-431105, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023825 // cdna:GeneFinder chromosome:SGD1:IV:431105:431514:-1 // ensembl // 11 // --- /// YDL012C // cdna:known chromosome:SGD1:IV:431105:431514:-1 gene:YDL012C // ensembl // 11 // --- --- No cerevisiae_gene 2.09198699608134 1.18897929034915 1.09698807860367 1.34748143677462 1.22044831982196 Max fold change below threshold 4 2.09198699608134 Max fold change at or above threshold -1.31812988899818 -0.00172733301848596 1.10237582186829 0.217481400148378 723.149688720703 87.2948944424119 0.120714833739114 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777944_at YNL151C.S1 RNA polymerase III subunit C31; contains HMG-like C-terminal domain 2.09192886875315 217.081619262695 249.516761779785 RPC31 6383 // transcription from RNA polymerase III promoter // traceable author statement 5666 // DNA-directed RNA polymerase III complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 235.47590637207 229.194351196289 204.968887329102 263.5576171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL151C /GEN=RPC31 /DB_XREF=GI:6324178 /SEG=NC_001146:-347766,348521 /DEF=RNA polymerase III subunit C31; contains HMG-like C-terminal domain /NOTE=Rpc31p; go_component: DNA-directed RNA polymerase III complex [goid GO:0005666] [evidence TAS] [pmid 8246845]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 8246845]; go_process: transcription from Pol III promoter [goid GO:0006383] [evidence TAS] --- --- --- --- --- --- S0005095 // RPC31 SGDID:S0005095, Chr XIV from 348521-347766, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019917 // cdna:Genscan chromosome:SGD1:XIV:347766:348521:-1 // ensembl // 11 // --- /// GENEFINDER00000020564 // cdna:GeneFinder chromosome:SGD1:XIV:347766:348521:-1 // ensembl // 11 // --- /// YNL151C // cdna:known chromosome:SGD1:XIV:347766:348521:-1 gene:YNL151C // ensembl // 11 // --- --- No cerevisiae_gene 2.09192886875315 -1.02740711166307 -1.0963370604313 -1.14883731594828 1.11925513420069 Max fold change below threshold 4 2.09192886875315 Max fold change at or above threshold 0.0903892774916872 -0.17045562500053 -1.17643083073122 1.25649717824007 233.29919052124 24.081571523019 0.103221839172333 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772333_at YPL263C.S1 Cytoplasmic protein of unknown function 2.09189425915092 225.807647705078 300.366806030273 KEL3 --- 5737 // cytoplasm // inferred from direct assay --- 279.711242675781 180.905609130859 270.709686279297 321.022369384766 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL263C /GEN=KEL3 /DB_XREF=GI:6324992 /SEG=NC_001148:-44551,46506 /DEF=Kelch-repeat protein, similar to Kel1 and Kel2 /NOTE=Kel3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006184 // KEL3 SGDID:S0006184, Chr XVI from 46506-44551, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016982 // cdna:Genscan chromosome:SGD1:XVI:44551:46257:-1 // ensembl // 11 // --- /// GENEFINDER00000021000 // cdna:GeneFinder chromosome:SGD1:XVI:44551:46506:-1 // ensembl // 11 // --- /// YPL263C // cdna:known chromosome:SGD1:XVI:44551:46506:-1 gene:YPL263C // ensembl // 11 // --- --- No cerevisiae_gene 2.09189425915092 -1.54617230510222 -1.28425144632062 -1.03325169675383 1.14769204953577 Max fold change below threshold 4 2.09189425915092 Max fold change at or above threshold 0.281739255381807 -1.39279149241146 0.129183349173734 0.981868887855919 263.087226867676 59.0049682128143 0.224279106649643 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773230_at YOL059W.S1 NAD-dependent glycerol 3-phosphate dehydrogenase, homolog of Gpd1p, expression is controlled by an oxygen-independent signaling pathway required to regulate metabolism under anoxic conditions; located in cytosol and mitochondria 2.09189322959548 435.139404296875 285.425186157227 GPD2 6071 // glycerol metabolism // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5829 // cytosol // traceable author statement 4367 // glycerol-3-phosphate dehydrogenase (NAD+) activity // inferred from mutant phenotype 287.448944091797 376.525970458984 493.752838134766 283.401428222656 0.0107421996071935 0.00292969006113708 0.00122069998178631 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL059W /GEN=GPD2 /DB_XREF=GI:6324513 /SEG=NC_001147:+217125,218447 /DEF=Involved in glycerol production via conversion of glyerol-3-phosphate and NAD+ to glycerol phosphate and NADH /NOTE=Gpd2p; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 10781551]; go_function: glycerol-3-phosphate dehydrogenase (NAD+) activity [goid GO:0004367] [evidence IMP] [pmid 9171333]; go_process: glycerol metabolism [goid GO:0006071] [evidence IMP] [pmid 9171333] --- --- --- --- --- --- S0005420 // GPD2 SGDID:S0005420, Chr XV from 217125-218447, Verified ORF // sgd // 11 // --- /// GENSCAN00000017421 // cdna:Genscan chromosome:SGD1:XV:217269:218447:1 // ensembl // 11 // --- /// GENEFINDER00000022797 // cdna:GeneFinder chromosome:SGD1:XV:217269:218447:1 // ensembl // 11 // --- /// YOL059W // cdna:known chromosome:SGD1:XV:217125:218447:1 gene:YOL059W // ensembl // 11 // --- --- No cerevisiae_gene 2.09189322959548 1.30988816691823 -1.31708585783621 1.71770621629796 -1.01428191768307 Max fold change below threshold 4 2.09189322959548 Max fold change at or above threshold -0.737062796440944 0.164383603175061 1.35070225473168 -0.778023061465793 360.282295227051 98.8156660286537 0.27427288916981 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1777047_at YNL022C.S1 Non-essential protein with similarity to S. pombe hypothetical protein E349594 2.09114919993613 239.146354675293 369.297454833984 --- --- 5634 // nucleus // inferred from direct assay --- 342.315948486328 163.697525024414 314.595184326172 396.278961181641 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL022C /GEN=FAP1 /DB_XREF=GI:6324306 /SEG=NC_001146:-591425,592897 /DEF=Non-essential protein with similarity to S. pombe hypothetical protein E349594 /NOTE=Ynl022cp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10649453]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004967 // YNL022C SGDID:S0004967, Chr XIV from 592898-591426, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020019 // cdna:Genscan chromosome:SGD1:XIV:591426:592898:-1 // ensembl // 11 // --- /// GENEFINDER00000020519 // cdna:GeneFinder chromosome:SGD1:XIV:591426:592586:-1 // ensembl // 11 // --- /// YNL022C // cdna:known chromosome:SGD1:XIV:591426:592898:-1 gene:YNL022C // ensembl // 11 // --- --- No cerevisiae_gene 1.38860920946038 -2.09114919993613 1.40409007427916 -1.08811566591374 1.15764095401903 Max fold change below threshold 4 2.09114919993613 Max fold change at or above threshold 0.382342611581287 -1.41041625077464 0.104114617759613 0.923959021433737 304.221904754639 99.6332675924891 0.327501951816538 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770435_at YAL011W.S1 Protein of unknown function, component of the Swr1p complex that incorporates Htz1p into chromatin; required for formation of nuclear-associated array of smooth endoplasmic reticulum known as karmellae 2.09079321629309 295.311050415039 517.88069152832 SWC3 6338 // chromatin remodeling // inferred from direct assay /// 6338 // chromatin remodeling // inferred from physical interaction /// 6338 // chromatin remodeling // inferred from genetic interaction /// 7029 // ER organization and biogenesis // inferred from mutant phenotype 812 // SWR1 complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 531.173583984375 263.568542480469 327.053558349609 504.587799072266 0.000244141003349796 0.00415039015933871 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL011W /GEN=SWC3 /DB_XREF=GI:37362611 /SEG=NC_001133:+132204,134081 /DEF=Protein of unknown function, component of the Swr1p complex that incorporates Htz1p into chromatin; required for formation of nuclear-associated array of smooth endoplasmic reticulum known as karmellae /NOTE=Swc3p; go_component: SWR1 complex [goid GO:0000812] [evidence IPI] [pmid 14690608]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER organization and biogenesis [goid GO:0007029] [evidence IMP] [pmid 12868057]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 14645854]; go_process: chromatin remodeling [goid GO:0006338] [evidence IGI,IPI] [pmid 14690608] --- --- --- --- --- --- S0000009 // SWC3 SGDID:S0000009, Chr I from 132202-134079, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018232 // cdna:GeneFinder chromosome:SGD1:I:132202:134079:1 // ensembl // 11 // --- /// GENSCAN00000020371 // cdna:Genscan chromosome:SGD1:I:132202:134079:1 // ensembl // 11 // --- /// YAL011W // cdna:known chromosome:SGD1:I:132202:134079:1 gene:YAL011W // ensembl // 11 // --- --- No cerevisiae_gene -2.09079321629309 -2.01531479813733 -1.11269448824384 -1.62411803945753 -1.05268812476439 Max fold change below threshold 4 2.09079321629309 Max fold change at or above threshold 0.947093704825462 -1.08735566865178 -0.604715094937926 0.744977058764247 406.59587097168 131.536839890255 0.323507564343704 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777937_at YMR194C-B.S1 Identified based on homology to Ashbya gossypii 2.09070812446414 2567.30297851563 1309.40942382813 --- --- --- --- 1280.54418945313 2677.244140625 2457.36181640625 1338.27465820313 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR194C-B /GEN=RPL36A /DB_XREF=GI:33438857 /SEG=NC_001145:-652593,652886 /DEF=Identified based on homology to Ashbya gossypii /NOTE=Ymr194c-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028514 // YMR194C-B SGDID:S0028514, Chr XIII from 652886-652847,652774-652593, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YMR194C-B // cdna:known chromosome:SGD1:XIII:652593:652886:-1 gene:YMR194C-B // ensembl // 11 // --- --- No cerevisiae_gene -1.17899543584274 2.09070812446414 1.22376246137116 1.91899806086013 1.04508276186443 Max fold change below threshold 4 2.09070812446414 Max fold change at or above threshold -0.898464543339368 1.00920111410729 0.708877513294014 -0.819614084061934 1938.35620117188 732.151331508116 0.377717640888438 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774553_at YOL060C.S1 Protein required for normal mitochondrial morphology, has similarity to hemolysins 2.09065108945477 1731.07421875 875.571044921875 MAM3 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype /// 30026 // manganese ion homeostasis // inferred from mutant phenotype 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay --- 867.068542480469 1649.41064453125 1812.73779296875 884.073547363281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL060C /GEN=MAM3 /DB_XREF=GI:6324512 /SEG=NC_001147:-214016,216136 /DEF=putative hemolysin-like protein with three transmembrane domains /NOTE=Mam3p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: hemolysis [goid GO:0019836] [evidence ISS] [pmid 10639459]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence IMP] [pmid 10628851] --- --- --- --- scop // a.140.3.Rho termination factor, N-terminal domain // All alpha proteins; LEM/SAP HeH motif; Rho termination factor, N-terminal domain; Rho termination factor, N-terminal domain // 7.0 /// scop // a.140.3.Rho termination factor, N-terminal domain // All alpha proteins; LEM/SAP HeH motif; Rho termination factor, N-terminal domain; Rho termination factor, N-terminal domain // 3.20000004768372 S0005421 // span:21-43,63-85,178-200 // numtm:3 S0005421 // MAM3 SGDID:S0005421, Chr XV from 216136-214016, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017420 // cdna:Genscan chromosome:SGD1:XV:214016:216136:-1 // ensembl // 10 // --- /// GENEFINDER00000022832 // cdna:GeneFinder chromosome:SGD1:XV:214016:216136:-1 // ensembl // 10 // --- /// YOL060C // cdna:known chromosome:SGD1:XV:214016:216136:-1 gene:YOL060C // ensembl // 10 // --- --- No cerevisiae_gene 1.1967534116272 1.90228403375435 -1.04559317474319 2.09065108945477 1.01961206530935 Max fold change below threshold 4 2.09065108945477 Max fold change at or above threshold -0.875214943888213 0.694323349631001 1.02199101978703 -0.841099425529822 1303.32263183594 498.453656900983 0.382448401282522 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773484_at YBR049C.S1 RNA polymerase I enhancer binding protein; DNA binding protein which binds to genes transcribed by both RNA polymerase I and RNA polymerase II; required for termination of RNA polymerase I transcription 2.09060602069459 880.392700195313 601.081481933594 REB1 6357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 6363 // transcription termination from RNA polymerase I promoter // traceable author statement 5634 // nucleus // traceable author statement 3702 // RNA polymerase II transcription factor activity // inferred from direct assay /// 3716 // RNA polymerase I transcription termination factor activity // traceable author statement 597.339538574219 836.31591796875 924.469482421875 604.823425292969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR049C /GEN=REB1 /DB_XREF=GI:6319523 /SEG=NC_001134:-334346,336778 /DEF=DNA binding protein which binds sites found in genes transcribed by both RNA polymerase I and RNA polymerase II. Reb1p is required for termination of RNA polymerase I transcription. /NOTE=Reb1p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 9632820]; go_function: Pol I transcription termination factor activity [goid GO:0003716] [evidence TAS] [pmid 7565745]; go_function: RNA polymerase II transcription factor activity [goid GO:0003702] [evidence IDA] [pmid 9435793]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence TAS] [pmid 9632820]; go_process: transcription termination from Pol I promoter [goid GO:0006363] [evidence TAS] [pmid 7565745] --- --- --- --- scop // a.4.1.Myb // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb // 8.0 /// scop // a.4.1.Myb // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb // 7.00000009601354E-6 --- S0000253 // REB1 SGDID:S0000253, Chr II from 336816-334384, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021180 // cdna:Genscan chromosome:SGD1:II:334384:336816:-1 // ensembl // 11 // --- /// GENEFINDER00000022208 // cdna:GeneFinder chromosome:SGD1:II:334384:336816:-1 // ensembl // 11 // --- /// YBR049C // cdna:known chromosome:SGD1:II:334384:336816:-1 gene:YBR049C // ensembl // 11 // --- --- No cerevisiae_gene 2.09060602069459 1.40006790771785 -1.0804565406198 1.54764488657235 1.01252869806109 Max fold change below threshold 4 2.09060602069459 Max fold change at or above threshold -0.867731634433658 0.578369506638304 1.11180703911831 -0.822444911322958 740.737091064453 165.255646792024 0.223096222378373 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772459_at YDL181W.S1 Protein that inhibits ATP hydrolysis by the F1F0-ATP synthase, inhibitory function is enhanced by stabilizing proteins Stf1p and Stf2p; has similarity to Stf1p and both Inh1p and Stf1p exhibit the potential to form coiled-coil structures 2.09034304548395 3448.46704101563 1712.37475585938 INH1 15986 // ATP synthesis coupled proton transport // traceable author statement 5753 // proton-transporting ATP synthase complex (sensu Eukaryota) // traceable author statement 4857 // enzyme inhibitor activity // inferred from direct assay 1738.66638183594 3262.52490234375 3634.4091796875 1686.08312988281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL181W /GEN=INH1 /DB_XREF=GI:6320020 /SEG=NC_001136:+135180,135437 /DEF=Protein that inhibits ATP hydrolysis by the F1F0-ATP synthase, inhibitory function is enhanced by stabilizing proteins Stf1p and Stf2p; has similarity to Stf1p and both Inh1p and Stf1p exhibit the potential to form coiled-coil structures /NOTE=Inh1p; go_component: proton-transporting ATP synthase complex (sensu Eukarya) [goid GO:0005753] [evidence TAS] [pmid 10838056]; go_function: enzyme inhibitor activity [goid GO:0004857] [evidence IDA] [pmid 12167646]; go_process: ATP synthesis coupled proton transport [goid GO:0015986] [evidence TAS] [pmid 10838056] --- --- --- --- --- --- S0002340 // INH1 SGDID:S0002340, Chr IV from 135180-135437, Verified ORF // sgd // 11 // --- /// YDL181W // cdna:known chromosome:SGD1:IV:135180:135437:1 gene:YDL181W // ensembl // 11 // --- --- No cerevisiae_gene -1.32952278557709 1.87645251350561 1.14104241651516 2.09034304548395 -1.03118663073082 Max fold change below threshold 4 2.09034304548395 Max fold change at or above threshold -0.830138058072931 0.672690769147997 1.03944293469429 -0.881995645769355 2580.4208984375 1013.99340557352 0.392956593316818 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
RPTR-Sc-K01486-1_s_at AFFX-Sc-K01486-1 DNA-binding transcription factor required for the activation of the GAL genes in response to galactose; repressed by Gal80p and activated by Gal3p 2.09008851041148 GAL4 6012 // galactose metabolism // traceable author statement /// 6355 // regulation of transcription, DNA-dependent // traceable author statement 5634 // nucleus // traceable author statement 16563 // transcriptional activator activity // traceable author statement 547.105224609375 341.602600097656 379.985443115234 540.128356933594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL K01486 /FEA=CDS /DB_XREF=AAA34626.1 GI:171558 /NOTE=GAL4 protein --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 0.509999990463257 --- S0006169 // GAL4 SGDID:S0006169, Chr XVI from 82356-79711, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016996 // cdna:Genscan chromosome:SGD1:XVI:79711:82356:-1 // ensembl // 11 // --- /// GENEFINDER00000021034 // cdna:GeneFinder chromosome:SGD1:XVI:79711:80916:-1 // ensembl // 11 // --- /// YPL248C // cdna:known chromosome:SGD1:XVI:79711:82356:-1 gene:YPL248C // ensembl // 11 // --- --- No No -2.09008851041148 -1.6015839002776 1.10278418505067 -1.43980574656767 -1.01291705496706 Max fold change below threshold 4 2.09008851041148 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777394_at YLL042C.S1 Enzyme that mediates formation of the Atg12p-Atg5p conjugate, which is a critical step in autophagy 2.09000533907232 331.503860473633 191.527084350586 ATG10 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6914 // autophagy // inferred from mutant phenotype 5737 // cytoplasm // traceable author statement 8640 // ubiquitin-like conjugating enzyme activity // inferred from mutant phenotype 173.963272094727 299.423553466797 363.584167480469 209.090896606445 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL042C /GEN=ATG10 /DB_XREF=GI:6322986 /SEG=NC_001144:-52086,52589 /DEF=Enzyme that mediates formation of the Atg12p-Atg5p conjugate, which is a critical step in autophagy /NOTE=Atg10p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 10508157]; go_function: ubiquitin-like conjugating enzyme activity [goid GO:0008640] [evidence IMP] [pmid 10508157]; go_process: autophagy [goid GO:0006914] [evidence IMP] [pmid 8224160]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 10508157] --- --- --- --- --- --- S0003965 // ATG10 SGDID:S0003965, Chr XII from 52589-52086, reverse complement, Verified ORF // sgd // 11 // --- /// YLL042C // cdna:known chromosome:SGD1:XII:52086:52589:-1 gene:YLL042C // ensembl // 11 // --- --- No cerevisiae_gene 1.27426841683919 1.72118832821077 1.29872385909235 2.09000533907232 1.20192552191471 Max fold change below threshold 4 2.09000533907232 Max fold change at or above threshold -1.01620101831249 0.439991575658864 1.18469109274573 -0.608481650092109 261.515472412109 86.1563792395847 0.329450408593091 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777903_at YJL198W.S1 Low-affinity phosphate transporter; deletion of pho84, pho87, pho89, pho90, and pho91 causes synthetic lethality; transcription independent of Pi and Pho4p activity; overexpression results in vigorous growth 2.08974052240669 1295.90502929688 2356.72583007813 PHO90 6817 // phosphate transport // inferred from genetic interaction 16020 // membrane // inferred from sequence similarity 15114 // phosphate transporter activity // inferred from genetic interaction /// 15114 // phosphate transporter activity // traceable author statement 2341.41650390625 1120.43408203125 1471.3759765625 2372.03515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL198W /GEN=PHO90 /DB_XREF=GI:6322263 /SEG=NC_001142:+60843,63488 /DEF=Low-affinity phosphate transporter; deletion of pho84, pho87, pho89, pho90, and pho91 causes synthetic lethality; transcription independent of Pi and Pho4p activity; overexpression results in vigorous growth /NOTE=Pho90p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 11779791]; go_function: phosphate transporter activity [goid GO:0015114] [evidence IGI,TAS] [pmid 11779791]; go_process: phosphate transport [goid GO:0006817] [evidence IGI] [pmid 11779791] --- --- --- --- --- S0003734 // span:414-430,451-473,493-515,538-560,580-602,623-645,665-682,689-711,721-743,759-790,805-827,847-869 // numtm:12 S0003734 // PHO90 SGDID:S0003734, Chr X from 60843-63488, Verified ORF // sgd // 11 // --- /// GENSCAN00000023990 // cdna:Genscan chromosome:SGD1:X:60843:63488:1 // ensembl // 11 // --- /// GENEFINDER00000024490 // cdna:GeneFinder chromosome:SGD1:X:60843:63488:1 // ensembl // 11 // --- /// YJL198W // cdna:known chromosome:SGD1:X:60843:63488:1 gene:YJL198W // ensembl // 11 // --- --- No cerevisiae_gene 1.12003065135058 -2.08974052240669 1.04194999563107 -1.59131081464058 1.01307697809965 Max fold change below threshold 4 2.08974052240669 Max fold change at or above threshold 0.818759698247703 -1.12200736541325 -0.564180767779597 0.867428434945142 1826.3154296875 629.123630927562 0.344476983932185 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777242_at YLR060W.S1 Beta subunit of cytoplasmic phenylalanyl-tRNA synthetase, forms a tetramer with Frs2p to generate the active enzyme; evolutionarily distant from mitochondrial phenylalanyl-tRNA synthetase based on protein sequence, but substrate binding is similar 2.08963812684133 1384.21051025391 2583.72302246094 FRS1 6432 // phenylalanyl-tRNA aminoacylation // traceable author statement 5737 // cytoplasm // traceable author statement /// 9328 // phenylalanine-tRNA ligase complex // traceable author statement 4826 // phenylalanine-tRNA ligase activity // inferred from sequence similarity /// 4826 // phenylalanine-tRNA ligase activity // inferred from mutant phenotype 2648.03881835938 1267.2236328125 1501.19738769531 2519.4072265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR060W /GEN=FRS1 /DB_XREF=GI:6323089 /SEG=NC_001144:+260980,262767 /DEF=Alpha (large) subunit of cytoplasmic phenylalanyl-tRNA synthetase /NOTE=Frs1p; go_component: phenylalanine-tRNA ligase complex [goid GO:0009328] [evidence TAS] [pmid 3049607]; go_function: phenylalanine-tRNA ligase activity [goid GO:0004826] [evidence IMP,ISS] [pmid 3049607]; go_process: phenylalanyl-tRNA aminoacylation [goid GO:0006432] [evidence TAS] [pmid 3049607] --- --- --- --- --- --- S0004050 // FRS1 SGDID:S0004050, Chr XII from 260980-262767, Verified ORF // sgd // 11 // --- /// GENSCAN00000017867 // cdna:Genscan chromosome:SGD1:XII:260980:262767:1 // ensembl // 11 // --- /// GENEFINDER00000024779 // cdna:GeneFinder chromosome:SGD1:XII:261076:262767:1 // ensembl // 11 // --- /// YLR060W // cdna:known chromosome:SGD1:XII:260980:262767:1 gene:YLR060W // ensembl // 11 // --- --- No cerevisiae_gene 1.44216823937453 -2.08963812684133 -1.31893991268247 -1.76395112332611 -1.05105629230586 Max fold change below threshold 4 2.08963812684133 Max fold change at or above threshold 0.947233608556278 -1.02236373711101 -0.688623138516356 0.763753267071084 1983.96676635742 701.064706745462 0.35336514634901 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773766_at YMR215W.S1 Putative 1,3-beta-glucanosyltransferase, has similarity to Gas1p; localizes to the cell wall 2.08925912662239 629.096923828125 687.879577636719 GAS3 --- 9277 // cell wall (sensu Fungi) // inferred from direct assay 42124 // 1,3-beta-glucanosyltransferase activity // inferred from sequence similarity 674.912109375 635.089904785156 623.103942871094 700.847045898438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR215W /GEN=GAS3 /DB_XREF=GI:6323871 /SEG=NC_001145:+696795,698369 /DEF=Protein of unknown function, localizes to the cell wall /NOTE=Gas3p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004828 // GAS3 SGDID:S0004828, Chr XIII from 696795-698369, Verified ORF // sgd // 11 // --- /// GENSCAN00000018896 // cdna:Genscan chromosome:SGD1:XIII:696795:698369:1 // ensembl // 11 // --- /// GENEFINDER00000021981 // cdna:GeneFinder chromosome:SGD1:XIII:696795:698369:1 // ensembl // 11 // --- /// YMR215W // cdna:known chromosome:SGD1:XIII:696795:698369:1 gene:YMR215W // ensembl // 11 // --- --- No cerevisiae_gene 2.08925912662239 -1.06270325553878 -1.0279276471222 -1.08314530359925 1.03842713171565 Max fold change below threshold 4 2.08925912662239 Max fold change at or above threshold 0.457660024019926 -0.652008020849061 -0.986003565797972 1.18035156262711 658.488250732422 35.8865921876171 0.054498454828467 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780095_at YDL013W.S1 Ring finger protein involved in the DNA damage response with possible recombination role; genetically identified by synthetic lethality with SGS1 (DNA helicase) and TOP3 (DNA topoisomerase); sporulation role; interacts with Slx8p and Lin1p 2.08741612245838 1154.48583984375 2091.708984375 HEX3 6310 // DNA recombination // inferred from genetic interaction /// 6310 // DNA recombination // inferred from mutant phenotype /// 6974 // response to DNA damage stimulus // traceable author statement /// 30437 // sporulation (sensu Fungi) // traceable author statement 5634 // nucleus // inferred from sequence similarity 3677 // DNA binding // inferred from sequence similarity 2024.8359375 1338.95141601563 970.020263671875 2158.58203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL013W /GEN=HEX3 /DB_XREF=GI:6320191 /SEG=NC_001136:+429064,430923 /DEF=Ring finger protein involved in the DNA damage response with possible recombination role; genetically identified by synthetic lethality with SGS1 (DNA helicase) and TOP3 (DNA topoisomerase); sporulation role; interacts with Slx8p and Lin1p /NOTE=Hex3p; go_component: nucleus [goid GO:0005634] [evidence ISS] [pmid 11139495]; go_function: DNA binding [goid GO:0003677] [evidence ISS] [pmid 11139495]; go_process: DNA recombination [goid GO:0006310] [evidence IGI,IMP] [pmid 11139495]; go_process: response to DNA damage stimulus [goid GO:0006974] [evidence TAS] [pmid 12402242]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence TAS] [pmid 12402242] --- --- --- --- --- --- S0002171 // HEX3 SGDID:S0002171, Chr IV from 429064-430923, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023691 // cdna:GeneFinder chromosome:SGD1:IV:429064:430923:1 // ensembl // 11 // --- /// GENSCAN00000025090 // cdna:Genscan chromosome:SGD1:IV:429064:430923:1 // ensembl // 11 // --- /// YDL013W // cdna:known chromosome:SGD1:IV:429064:430923:1 gene:YDL013W // ensembl // 11 // --- --- No cerevisiae_gene -1.68144459763469 -1.51225497301866 -1.2195375618933 -2.08741612245838 1.06605280520413 Max fold change below threshold 4 2.08741612245838 Max fold change at or above threshold 0.711892794549675 -0.503515282788961 -1.15727242192081 0.948894910160099 1623.09741210938 564.324471980018 0.347683674294461 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776403_at YBR086C.S1 Plasma membrane protein that may be involved in osmotolerance, localizes to the mother cell in small-budded cells and to the bud in medium- and large-budded cells; mRNA is transported to the bud tip by an actomyosin-driven process 2.08682511254053 2177.56286621094 3207.80456542969 IST2 6970 // response to osmotic stress // traceable author statement 5886 // plasma membrane // inferred from direct assay /// 5933 // bud // inferred from direct assay --- 3240.36303710938 2274.24340820313 2080.88232421875 3175.24609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR086C /GEN=IST2 /DB_XREF=GI:27808701 /SEG=NC_001134:-420158,422998 /DEF=Plasma membrane protein that may be involved in osmotolerance, localizes to the mother cell in small-budded cells and to the bud in medium- and large-budded cells; mRNA is transported to the bud tip by an actomysin-driven process /NOTE=Ist2p; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 11030653]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 11030653]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to osmotic stress [goid GO:0006970] [evidence TAS] [pmid 12362983] --- --- --- --- --- S0000290 // span:122-144,154-175,221-243,253-275,303-325,451-473,508-530,566-588 // numtm:8 S0000290 // IST2 SGDID:S0000290, Chr II from 423035-420195, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021209 // cdna:Genscan chromosome:SGD1:II:420150:422066:-1 // ensembl // 11 // --- /// GENEFINDER00000022286 // cdna:GeneFinder chromosome:SGD1:II:420150:422192:-1 // ensembl // 11 // --- /// YBR086C // cdna:known chromosome:SGD1:II:420195:423035:-1 gene:YBR086C // ensembl // 11 // --- --- No cerevisiae_gene -2.08682511254053 -1.42480924663626 -1.14279073363701 -1.55720628667743 -1.02050768395166 Max fold change below threshold 4 2.08682511254053 Max fold change at or above threshold 0.9118653932383 -0.696687314675362 -1.01862621948812 0.803448140925183 2692.68371582031 600.614219324734 0.223054128413206 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772940_at YNL001W.S1 Probable RNA-binding protein, functions in protein translation to promote G1 progression and differentiation, required for meiotic cell division 2.08664074986637 1100.43090820313 583.638549804688 DOM34 6412 // protein biosynthesis // inferred from mutant phenotype /// 7126 // meiosis // traceable author statement 5737 // cytoplasm // inferred from direct assay --- 585.227966308594 1221.16052246094 979.701293945313 582.049133300781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL001W /GEN=DOM34 /DB_XREF=GI:6324327 /SEG=NC_001146:+627455,628615 /DEF=Probable RNA-binding protein, functions in protein translation to promote G1 progression and differentiation, required for meiotic cell division /NOTE=Dom34p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiosis [goid GO:0007126] [evidence TAS] [pmid 8900058]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP] [pmid 9584085] --- --- --- --- --- --- S0004946 // DOM34 SGDID:S0004946, Chr XIV from 627456-628616, Verified ORF // sgd // 11 // --- /// GENSCAN00000020037 // cdna:Genscan chromosome:SGD1:XIV:627456:628616:1 // ensembl // 11 // --- /// GENEFINDER00000020545 // cdna:GeneFinder chromosome:SGD1:XIV:627456:628616:1 // ensembl // 11 // --- /// YNL001W // cdna:known chromosome:SGD1:XIV:627456:628616:1 gene:YNL001W // ensembl // 11 // --- --- No cerevisiae_gene 1.51232841852764 2.08664074986637 1.43250331781976 1.67405071245128 -1.00546145132076 Max fold change below threshold 4 2.08664074986637 Max fold change at or above threshold -0.817244620248622 1.20650450108222 0.438100844407885 -0.827360725241487 842.034729003906 314.234876966442 0.373185174129539 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Sc-EAF5-M_at AFFX-r2-Sc-EAF5-M Esa1p-associated factor, subunit of the NuA4 acetyltransferase complex 2.08654635960159 224.233375549316 473.94401550293 EAF5 --- 5634 // nucleus // inferred from direct assay /// 43189 // H4/H2A histone acetyltransferase complex // inferred from physical interaction --- 434.238677978516 208.11360168457 240.353149414063 513.649353027344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=EAF5 SGD:YEL018W Esa1p-associated factor, subunit of the NuA4 acetyltransferase complex (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- S0000744 // EAF5 SGDID:S0000744, Chr V from 121471-122310, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016789 // cdna:Genscan chromosome:SGD1:V:121570:122310:1 // ensembl // 11 // --- /// YEL018W // cdna:known chromosome:SGD1:V:121471:122310:1 gene:YEL018W // ensembl // 11 // --- GENEFINDER00000019613 // ensembl // 8 // Cross Hyb Matching Probes /// YEL018C-A // ensembl // 9 // Negative Strand Matching Probes AFFX_control cerevisiae_gene -1.11954247813199 -2.08654635960159 1.02717431905373 -1.80666939059093 1.18287333458757 Max fold change below threshold 4 2.08654635960159 Max fold change at or above threshold 0.573958782727882 -0.950251437826022 -0.73293874981857 1.10923140491671 349.088695526123 148.35557014686 0.424979588420267 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 No No 3 < x
1773777_at YER038C.S1 Essential protein of unknown function; heterozygous mutant shows haploinsufficiency in K1 killer toxin resistance 2.08615213755893 79.149040222168 62.4723415374756 KRE29 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 57.7329368591309 84.1344604492188 74.1636199951172 67.2117462158203 0.000244141003349796 0.000244141003349796 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER038C /GEN=KRE29 /DB_XREF=GI:6320876 /SEG=NC_001137:-226857,228251 /DEF=Killer toxin REsistant /NOTE=Kre29p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000840 // KRE29 SGDID:S0000840, Chr V from 228251-226857, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019589 // cdna:GeneFinder chromosome:SGD1:V:226857:228251:-1 // ensembl // 11 // --- /// YER038C // cdna:known chromosome:SGD1:V:226857:228251:-1 gene:YER038C // ensembl // 11 // --- --- No cerevisiae_gene 1.73861276964583 1.45730435738109 2.08615213755893 1.28459808265215 1.16418373760922 Max fold change below threshold 4 2.08615213755893 Max fold change at or above threshold -1.17324271348495 1.19531347192457 0.30080085977516 -0.322871618214776 70.8106908798218 11.1466739749402 0.157415128089317 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773028_at YJR113C.S1 Mitochondrial ribosomal protein of the small subunit, has similarity to E. coli S7 ribosomal protein 2.08514157463147 2549.70227050781 1320.07934570313 RSM7 6412 // protein biosynthesis // inferred from direct assay 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // inferred from direct assay 1269.11206054688 2453.12622070313 2646.2783203125 1371.04663085938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR113C /GEN=RSM7 /DB_XREF=GI:6322574 /SEG=NC_001142:-638147,638890 /DEF=Mitochondrial ribosomal protein of the small subunit, has similarity to E. coli S7 ribosomal protein /NOTE=Rsm7p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 11278769]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 11278769]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 11278769] --- --- --- --- --- --- S0003874 // RSM7 SGDID:S0003874, Chr X from 638890-638147, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024222 // cdna:Genscan chromosome:SGD1:X:638147:638890:-1 // ensembl // 11 // --- /// GENEFINDER00000024408 // cdna:GeneFinder chromosome:SGD1:X:638147:639143:-1 // ensembl // 11 // --- /// YJR113C // cdna:known chromosome:SGD1:X:638147:638890:-1 gene:YJR113C // ensembl // 11 // --- S0003875 // sgd // 2 // Negative Strand Matching Probes /// YJR114W // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene 1.55159299714925 1.93294689804307 1.15802092729465 2.08514157463147 1.08031959783644 Max fold change below threshold 4 2.08514157463147 Max fold change at or above threshold -0.930508084756103 0.724298038946632 0.994251970238681 -0.78804192442921 1934.89080810547 715.500228816499 0.369788427243124 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770446_at SPAC4G9.11c.S1 --- 2.0850941253618 --- --- --- --- 0.304588854312897 0.635096430778503 0.257090598344803 0.199495017528534 0.981445014476776 0.850341975688934 0.99804699420929 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4G9.11c /GEN=cmb1 /DEF=HMG box --- --- --- --- --- --- SPAC4G9.11c // |cmb1||HMG box|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.21769808066412 2.0850941253618 1.44971999859887 -1.18475298697773 -1.52679930599936 Max fold change below threshold 0 2.0850941253618 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773257_at YHR001W-A.S1 8.5 kDa subunit of the ubiqunol-cytochrome c oxidoreductase complex 2.08502613120928 5634.68493652344 3233.572265625 QCR10 6122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay /// 5750 // respiratory chain complex III (sensu Eukaryota) // inferred from direct assay 8121 // ubiquinol-cytochrome-c reductase activity // inferred from direct assay 3493.72143554688 7284.50048828125 3984.86938476563 2973.42309570313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR001W-A /GEN=QCR10 /DB_XREF=GI:6321788 /SEG=NC_001140:+107820,108116 /DEF=8.5 kDa subunit of the ubiqunol-cytochrome c oxidoreductase complex /NOTE=Qcr10p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_component: respiratory chain complex III (sensu Eukarya) [goid GO:0005750] [evidence IDA] [pmid 8175712]; go_function: ubiquinol-cytochrome-c reductase activity [goid GO:0008121] [evidence IDA] [pmid 8175712]; go_process: aerobic respiration [goid GO:0009060] [evidence IGI] [pmid 8175712]; go_process: mitochondrial electron transport, ubiquinol to cytochrome c [goid GO:0006122] [evidence IMP] [pmid 8175712] --- --- --- --- --- S0003529 // span:22-44 // numtm:1 S0003529 // QCR10 SGDID:S0003529, Chr VIII from 107820-107825,107889-108116, intron sequence removed, Verified ORF // sgd // 10 // --- /// YHR001W-A // cdna:known chromosome:SGD1:VIII:107820:108116:1 gene:YHR001W-A // ensembl // 10 // --- --- No cerevisiae_gene -1.1399249751428 2.08502613120928 -1.04661996342388 1.14058016881986 -1.17498294830481 Max fold change below threshold 4 2.08502613120928 Max fold change at or above threshold -0.483597738266994 1.46578359715089 -0.23102837671447 -0.751157482169428 4434.12860107422 1944.60621114019 0.438554310461154 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773360_at YMR192W.S1 Putative GTPase activating protein (GAP) that may have a role in polarized exocytosis; stimulates Gyp5p GAP activity on Ypt1p, colocalizes with Gyp5p at sites of polarized growth; interacts with Gyp5p, Rvs161p, and Rvs167p 2.08464145626416 75.9256381988525 142.939735412598 GYL1 6888 // ER to Golgi transport // inferred from genetic interaction /// 6888 // ER to Golgi transport // inferred from physical interaction /// 7015 // actin filament organization // RCA 131 // incipient bud site // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5798 // Golgi vesicle // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay /// 5933 // bud // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 5515 // protein binding // inferred from physical interaction /// 5515 // protein binding // inferred from sequence similarity 117.715148925781 95.3834609985352 56.4678153991699 168.164321899414 0.00195312988944352 0.00292969006113708 0.00292969006113708 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR192W /GEN=APP2 /DB_XREF=GI:6323846 /SEG=NC_001145:+647117,649279 /DEF=Protein of unknown function, interacts with Rvs161p and Rvs167p; computational analysis of protein-protein interactions in large-scale studies suggests a possible role in actin filament organization /NOTE=App2p; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 14562095]; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 14562095]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: actin filament organization [goid GO:0007015] [evidence TAS] [pmid 14566057] --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 5.90000009536743 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 2.20000004768372 --- S0004804 // APP2 SGDID:S0004804, Chr XIII from 647117-649279, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000018875 // cdna:Genscan chromosome:SGD1:XIII:647117:649279:1 // ensembl // 10 // --- /// GENEFINDER00000022104 // cdna:GeneFinder chromosome:SGD1:XIII:647117:649279:1 // ensembl // 10 // --- /// YMR192W // cdna:known chromosome:SGD1:XIII:647117:649279:1 gene:YMR192W // ensembl // 10 // --- --- No cerevisiae_gene -1.24131924261405 -1.23412536820811 -1.14709187457135 -2.08464145626416 1.42856992862865 Max fold change below threshold 4 2.08464145626416 Max fold change at or above threshold 0.177653686867541 -0.301347199190688 -1.13606371432169 1.25975722664484 109.432686805725 46.6213916868024 0.426028027344051 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775044_at YBR115C.S1 Alpha aminoadipate reductase, catalyzes the reduction of alpha-aminoadipate to alpha-aminoadipate 6-semialdehyde, which is the fifth step in biosynthesis of lysine; activation requires posttranslational phosphopantetheinylation by Lys5p 2.08462505125284 1266.45611572266 986.630584716797 LYS2 19878 // lysine biosynthesis, aminoadipic pathway // traceable author statement 5737 // cytoplasm // traceable author statement 4043 // L-aminoadipate-semialdehyde dehydrogenase activity // traceable author statement 918.007141113281 1106.94421386719 1425.96801757813 1055.25402832031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR115C /GEN=LYS2 /DB_XREF=GI:6319591 /SEG=NC_001134:-469704,473882 /DEF=A key step in fungal biosynthesis of lysine, enzymatic reduction of alpha-aminoadipate at C6 to the semialdehyde is catalyzed by holo-Lys2p, which is generated from apo-Lys2p by addition of phosphopantetheine by Lys5p. /NOTE=Lys2p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 3928261]; go_function: L-aminoadipate-semialdehyde dehydrogenase activity [goid GO:0004043] [evidence TAS] [pmid 3928261]; go_process: lysine biosynthesis, aminoadipic pathway [goid GO:0019878] [evidence TAS] [pmid 3928261] --- --- --- ec // AC2L_HUMAN // (Q9NUB1) Acetyl-coenzyme A synthetase 2-like, mitochondrial precursor (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acetyl-CoA synthetase 2) // 1.0E-157 --- --- S0000319 // LYS2 SGDID:S0000319, Chr II from 473920-469742, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021232 // cdna:Genscan chromosome:SGD1:II:469742:473920:-1 // ensembl // 11 // --- /// GENEFINDER00000022315 // cdna:GeneFinder chromosome:SGD1:II:469742:473920:-1 // ensembl // 11 // --- /// YBR115C // cdna:known chromosome:SGD1:II:469742:473920:-1 gene:YBR115C // ensembl // 11 // --- --- No cerevisiae_gene 2.08462505125284 1.20581220373164 -1.13295533578179 1.55332998373938 1.14950525007963 Max fold change below threshold 4 2.08462505125284 Max fold change at or above threshold -0.970167536634993 -0.0911805480534578 1.39300552735458 -0.331657442666133 1126.54335021973 214.948657043039 0.190803715632527 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777872_at YML037C.S1 Hypothetical protein 2.08461840923619 44.9101104736328 65.5177478790283 --- --- 30136 // clathrin-coated vesicle // inferred from direct assay --- 55.658390045166 53.3830451965332 36.4371757507324 75.3771057128906 0.000244141003349796 0.000732421991415322 0.00415039015933871 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML037C /GEN=YMD8 /DB_XREF=GI:6323604 /SEG=NC_001145:-204386,205408 /DEF=Hypothetical ORF /NOTE=Yml037cp; go_component: clathrin-coated vesicle [goid GO:0030136] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004501 // YML037C SGDID:S0004501, Chr XIII from 205408-204386, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018687 // cdna:Genscan chromosome:SGD1:XIII:204386:205408:-1 // ensembl // 11 // --- /// YML037C // cdna:known chromosome:SGD1:XIII:204386:205408:-1 gene:YML037C // ensembl // 11 // --- --- No cerevisiae_gene 2.08461840923619 -1.04262298713488 1.76640423815119 -1.52751657883493 1.35428110032869 Max fold change below threshold 4 2.08461840923619 Max fold change at or above threshold 0.0278757058020346 -0.114829418644242 -1.1776408028467 1.2645945156889 55.2139291763306 15.9443808164674 0.288774609130744 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777885_at YNR059W.S1 Putative alpha-1,3-mannosyltransferase, not required for protein O-glycosylation 2.08449811739213 521.712692260742 366.454437255859 MNT4 6493 // O-linked glycosylation // inferred from direct assay --- 33 // alpha-1,3-mannosyltransferase activity // inferred from direct assay 312.850067138672 436.420013427734 607.00537109375 420.058807373047 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR059W /GEN=MNT4 /DB_XREF=GI:6324387 /SEG=NC_001146:+736800,738542 /DEF=MaNnosylTransferase /NOTE=Mnt4p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: alpha-1,3-mannosyltransferase activity [goid GO:0000033] [evidence IDA] [pmid 10521541]; go_process: O-linked glycosylation [goid GO:0006493] [evidence IDA] [pmid 10521541] --- --- --- --- --- S0005342 // span:12-29 // numtm:1 S0005342 // MNT4 SGDID:S0005342, Chr XIV from 736801-738543, Verified ORF // sgd // 11 // --- /// GENSCAN00000020086 // cdna:Genscan chromosome:SGD1:XIV:736801:738543:1 // ensembl // 11 // --- /// YNR059W // cdna:known chromosome:SGD1:XIV:736801:738543:1 gene:YNR059W // ensembl // 11 // --- --- No cerevisiae_gene -1.10419688635308 1.39498136413789 2.08449811739213 1.94024369770933 1.34268408894684 Max fold change below threshold 4 2.08449811739213 Max fold change at or above threshold -1.07871248144902 -0.0629928228878567 1.33918389117126 -0.197478586834385 444.083564758301 121.657531433533 0.273951888986811 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769581_at SPBC1604.15.S1 --- 2.08443216713481 --- --- --- --- 7.37231302261353 15.3670864105225 10.1572980880737 3.90457725524902 0.0805663987994194 0.129638999700546 0.171387001872063 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1604.15 /DEF=GPI-anchor transamidase activity --- --- --- --- --- --- SPBC1604.15 // |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.07340523498212 2.08443216713481 1.21910817256555 1.37776272615089 -1.88812066983762 Max fold change below threshold 4 2.08443216713481 Max fold change at or above threshold APAPAA No 4 0 AAAA 4 0 0 No No x = 1
1779487_at YJL176C.S1 One of 11 subunits of the SWI/SNF chromatin remodeling complex that regulates transcription by remodeling chromosomes; required for transcription of many genes, including ADH1, ADH2, GAL1, HO, INO1 and SUC2 2.08415200083897 333.001800537109 530.383270263672 SWI3 6338 // chromatin remodeling // traceable author statement 16514 // SWI/SNF complex // traceable author statement /// 16585 // chromatin remodeling complex // traceable author statement 16251 // general RNA polymerase II transcription factor activity // traceable author statement 542.80908203125 260.446014404297 405.557586669922 517.957458496094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL176C /GEN=SWI3 /DB_XREF=GI:6322286 /SEG=NC_001142:-92051,94528 /DEF=transcription factor /NOTE=Swi3p; go_component: SWI/SNF complex [goid GO:0016514] [evidence TAS] [pmid 9726966]; go_component: nucleosome remodeling complex [goid GO:0005679] [evidence TAS] [pmid 9048886]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9048886]; go_process: chromatin remodeling [goid GO:0006338] [evidence TAS] [pmid 9048886] --- --- --- --- scop // a.4.1.Myb // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb // 0.0120000001043081 --- S0003712 // SWI3 SGDID:S0003712, Chr X from 94528-92051, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024004 // cdna:Genscan chromosome:SGD1:X:92051:94528:-1 // ensembl // 11 // --- /// GENEFINDER00000024335 // cdna:GeneFinder chromosome:SGD1:X:92051:94528:-1 // ensembl // 11 // --- /// YJL176C // cdna:known chromosome:SGD1:X:92051:94528:-1 gene:YJL176C // ensembl // 11 // --- --- No cerevisiae_gene -1.15744518250676 -2.08415200083897 -1.37900790301929 -1.33842664980901 -1.04798004764197 Max fold change below threshold 4 2.08415200083897 Max fold change at or above threshold 0.862458241655412 -1.32917173783801 -0.202852793857207 0.669566290039804 431.692535400391 128.837016407404 0.29844624551571 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777621_at YMR210W.S1 Hypothetical protein 2.08412030691329 1225.76232910156 2203.17016601563 --- --- --- --- 2183.1328125 1047.50805664063 1404.0166015625 2223.20751953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR210W /GEN=ERG12 /DB_XREF=GI:6323866 /SEG=NC_001145:+687515,688864 /DEF=Hypothetical ORF /NOTE=Ymr210wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004823 // YMR210W SGDID:S0004823, Chr XIII from 687515-688864, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018891 // cdna:Genscan chromosome:SGD1:XIII:687515:688864:1 // ensembl // 11 // --- /// YMR210W // cdna:known chromosome:SGD1:XIII:687515:688864:1 gene:YMR210W // ensembl // 11 // --- --- No cerevisiae_gene -2.00627632195059 -2.08412030691329 1.16341631596652 -1.55491951453454 1.01835651353953 Max fold change below threshold 4 2.08412030691329 Max fold change at or above threshold 0.80388333000196 -1.1440043126487 -0.532500745497966 0.872621728144704 1714.46624755859 583.00321383734 0.340049397103932 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771693_at YHL006C.S1 Protein of unassigned function involved in mutation suppression, important for error-free repair of spontaneous and induced DNA lesions to protect the genome from mutation; associates with Shu2p, Psy3p, and Csm2p 2.08407920074476 64.6752395629883 76.3192138671875 SHU1 45021 // error-free DNA repair // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 69.6433868408203 42.8164367675781 86.5340423583984 82.9950408935547 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL006C /GEN=SHU1 /DB_XREF=GI:41629684 /SEG=NC_001140:-98338,98790 /DEF=suppressor of HU sensitivity involved in recombination /NOTE=Shu1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000998 // SHU1 SGDID:S0000998, Chr VIII from 98790-98338, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020121 // cdna:GeneFinder chromosome:SGD1:VIII:98338:98790:-1 // ensembl // 11 // --- /// YHL006C // cdna:known chromosome:SGD1:VIII:98338:98790:-1 gene:YHL006C // ensembl // 11 // --- --- No cerevisiae_gene -1.16966779341327 -1.62655727796472 2.08407920074476 1.24253064481462 1.1917146000273 Max fold change below threshold 4 2.08407920074476 Max fold change at or above threshold -0.0430462515161864 -1.39552424542054 0.808494450195145 0.630076046741578 70.4972267150879 19.8354059690079 0.281364344290762 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772983_at YCR099C.S1 Hypothetical protein /// Hypothetical protein 2.08369592910344 70.0084991455078 113.047275543213 --- --- --- --- 114.624244689941 64.5182189941406 75.498779296875 111.470306396484 0.000244141003349796 0.00292969006113708 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR099C /GEN=GIT1 /DB_XREF=GI:6319942 /SEG=NC_001135:-300828,301295 /DEF=Hypothetical ORF /NOTE=Ycr099cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000696 // YCR099C SGDID:S0000696, Chr III from 301295-300828, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YCR099C // cdna:known chromosome:SGD1:III:300828:301295:-1 gene:YCR099C // ensembl // 11 // --- --- No cerevisiae_gene -2.08369592910344 -1.77661824019586 1.87927699021348 -1.51822646349311 -1.02829397707259 Max fold change below threshold 4 2.08369592910344 Max fold change at or above threshold 0.913535707455621 -1.06831982703024 -0.634003117502152 0.788787237076767 91.5278873443604 25.2823804883435 0.276225981194368 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770775_at SPAC630.07c.S1 --- 2.08357606124577 --- --- --- --- 9.76562023162842 12.2414684295654 16.3401393890381 10.0961503982544 0.0805663987994194 0.0439453125 0.0107421996071935 0.0239257998764515 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC630.07c /DEF=sequence orphan --- --- --- --- --- --- SPAC630.07c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.41617549617944 1.25352697926122 -2.08357606124577 1.67323109044487 1.03384630558902 Max fold change below threshold 4 2.08357606124577 Max fold change at or above threshold APPAPP No 4 0 APPP 1 3 0 No No 2 < x = 3
1774129_at YNL195C.S1 Hypothetical protein 2.0834205726977 8016.18872070313 7027.54174804688 --- --- 5739 // mitochondrion // inferred from direct assay --- 8571.78125 9911.595703125 6120.78173828125 5483.30224609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL195C /GEN=WHI3 /DB_XREF=GI:42742306 /SEG=NC_001146:-271522,272307 /DEF=Hypothetical ORF /NOTE=Ynl195cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005139 // YNL195C SGDID:S0005139, Chr XIV from 272307-271522, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019883 // cdna:Genscan chromosome:SGD1:XIV:271522:272307:-1 // ensembl // 11 // --- /// GENEFINDER00000020648 // cdna:GeneFinder chromosome:SGD1:XIV:271522:272307:-1 // ensembl // 11 // --- /// YNL195C // cdna:known chromosome:SGD1:XIV:271522:272307:-1 gene:YNL195C // ensembl // 11 // --- --- No cerevisiae_gene -2.0834205726977 1.15630525488795 -1.24959029757461 -1.40043896621725 -1.56325164386232 Max fold change below threshold 4 2.0834205726977 Max fold change at or above threshold 0.505689413347567 1.15100768139213 -0.674828348788297 -0.981868745951399 7521.865234375 2076.20722900794 0.276022923080255 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773416_at SPAC1071.11.S1 --- 2.08324002105266 --- --- --- --- 7.8742036819458 7.75020837783813 8.01083278656006 8.53901767730713 0.171387001872063 0.014160200022161 0.00195312988944352 0.00805663969367743 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1071.11 /DEF=NADH dependent oxidoreductase (predicted) --- --- --- --- --- --- SPAC1071.11 // |||NADH dependent oxidoreductase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.08324002105266 -1.01599896390686 1.26345885602494 1.01735148214765 1.08442936228404 Max fold change below threshold 4 2.08324002105266 Max fold change at or above threshold AMPPPP No 3 0 APPP 1 3 0 No No 2 < x = 3
1772199_at YNR058W.S1 7,8-diamino-pelargonic acid aminotransferase (DAPA), catalyzes the second step in the biotin biosynthesis pathway; BIO3 is in a cluster of 3 genes (BIO3, BIO4, and BIO5) that mediate biotin synthesis 2.08302812448828 95.5990257263184 186.449165344238 BIO3 9102 // biotin biosynthesis // inferred from direct assay /// 9102 // biotin biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from sequence similarity 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from direct assay /// 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from sequence similarity 171.297485351563 82.2348403930664 108.96321105957 201.600845336914 0.000732421991415322 0.030273400247097 0.014160200022161 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR058W /GEN=BIO3 /DB_XREF=GI:6324386 /SEG=NC_001146:+734288,735730 /DEF=biotin biosynthesis /NOTE=Bio3p; go_component: cytoplasm [goid GO:0005737] [evidence ISS] [pmid 10333520]; go_function: adenosylmethionine-8-amino-7-oxononanoate transaminase activity [goid GO:0004015] [evidence IDA,ISS] [pmid 10333520]; go_process: biotin biosynthesis [goid GO:0009102] [evidence IDA,IMP] [pmid 10333520] --- --- --- --- scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 0.096000000834465 --- S0005341 // BIO3 SGDID:S0005341, Chr XIV from 734289-735731, Verified ORF // sgd // 11 // --- /// GENSCAN00000020085 // cdna:Genscan chromosome:SGD1:XIV:734289:735731:1 // ensembl // 11 // --- /// GENEFINDER00000020697 // cdna:GeneFinder chromosome:SGD1:XIV:734289:735731:1 // ensembl // 11 // --- /// YNR058W // cdna:known chromosome:SGD1:XIV:734289:735731:1 gene:YNR058W // ensembl // 11 // --- --- No cerevisiae_gene 1.61707947656508 -2.08302812448828 -1.03089010360737 -1.57206715629841 1.17690487354884 Max fold change below threshold 4 2.08302812448828 Max fold change at or above threshold 0.550574002668282 -1.06918437987819 -0.583082687535075 1.10169306474498 141.024095535278 54.9851421781056 0.389898917411249 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1776643_at YGR230W.S1 Protein with some similarity to Spo12p; overexpression bypasses need for Spo12p, but not required for meiosis 2.08288951960772 269.098686218262 251.381561279297 BNS1 7126 // meiosis // inferred from genetic interaction --- --- 233.120819091797 295.427154541016 242.770217895508 269.642303466797 0.000244141003349796 0.00292969006113708 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR230W /GEN=BNS1 /DB_XREF=GI:6321669 /SEG=NC_001139:+951894,952307 /DEF=Protein with some similarity to Spo12p; overexpression bypasses need for Spo12p, but not required for meiosis /NOTE=Bns1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiosis [goid GO:0007126] [evidence IGI] [pmid 10564265] --- --- --- --- --- --- S0003462 // BNS1 SGDID:S0003462, Chr VII from 951896-952309, Verified ORF // sgd // 11 // --- /// YGR230W // cdna:known chromosome:SGD1:VII:951896:952309:1 gene:YGR230W // ensembl // 11 // --- --- No cerevisiae_gene 2.08288951960772 1.26727057536926 -1.30923778478404 1.04139226535538 1.15666333241828 Max fold change below threshold 4 2.08288951960772 Max fold change at or above threshold -0.965435611473782 1.25264320079472 -0.621921153701116 0.334713564380184 260.240123748779 28.090226147328 0.107939643367387 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776217_at YML081C-A.S1 Subunit of the mitochondrial F1F0 ATP synthase, which is a large enzyme complex required for ATP synthesis; termed subunit I or subunit j; does not correspond to known ATP synthase subunits in other organisms 2.0827214258578 4297.11474609375 2315.2998046875 ATP18 15986 // ATP synthesis coupled proton transport // inferred from mutant phenotype /// 15986 // ATP synthesis coupled proton transport // inferred from physical interaction 276 // proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota) // inferred from mutant phenotype /// 276 // proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota) // inferred from physical interaction 46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // inferred from mutant phenotype /// 46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // inferred from physical interaction 2416.93872070313 5033.81005859375 3560.41943359375 2213.66088867188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML081C-A /GEN=ATP18 /DB_XREF=GI:6323558 /SEG=NC_001145:-103983,104162 /DEF=Subunit of the mitochondrial F1F0 ATP synthase, which is a large enzyme complex required for ATP synthesis; termed subunit I or subunit j; does not correspond to known ATP synthase subunits in other organisms /NOTE=Atp18p; go_component: proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukarya) [goid GO:0000276] [evidence IMP,IPI] [pmid 9867807]; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism [goid GO:0046933] [evidence IMP,IPI] [pmid 9867807]; go_process: ATP synthesis coupled proton transport [goid GO:0015986] [evidence IMP,IPI] [pmid 9867878] --- --- --- --- --- --- S0007247 // ATP18 SGDID:S0007247, Chr XIII from 104162-103983, reverse complement, Verified ORF // sgd // 11 // --- /// YML081C-A // cdna:known chromosome:SGD1:XIII:103983:104162:-1 gene:YML081C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.20826080556896 2.0827214258578 1.04388854662543 1.47311117286332 -1.0918288040736 Max fold change below threshold 4 2.0827214258578 Max fold change at or above threshold -0.686515379608286 1.33370945623936 0.196251801966829 -0.8434458785979 3306.20727539063 1295.33668305421 0.391789314812747 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777707_at YBR047W.S1 The authentic, non-tagged protein was localized to the mitochondria 2.08268558510182 428.90771484375 867.069763183594 --- --- 5739 // mitochondrion // inferred from direct assay --- 834.938659667969 456.920227050781 400.895202636719 899.200866699219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR047W /GEN=ZTA1 /DB_XREF=GI:6319521 /SEG=NC_001134:+331793,332320 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ybr047wp --- --- --- --- --- --- S0000251 // FMP23 SGDID:S0000251, Chr II from 331831-332358, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000021178 // cdna:Genscan chromosome:SGD1:II:331831:332358:1 // ensembl // 10 // --- /// YBR047W // cdna:known chromosome:SGD1:II:331831:332358:1 gene:YBR047W // ensembl // 10 // --- --- No cerevisiae_gene -1.58930469317468 -1.82731822807918 1.2712818726523 -2.08268558510182 1.07696638104745 Max fold change below threshold 4 2.08268558510182 Max fold change at or above threshold 0.732114596304677 -0.748243411993295 -0.967643013706463 0.983771829395082 647.988739013672 255.356089877077 0.394074888192909 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775262_at YGL116W.S1 Cell-cycle regulated activator of anaphase-promoting complex/cyclosome (APC/C), which is required for metaphase/anaphase transition; directs ubiquitination of mitotic cyclins, Pds1p, and other anaphase inhibitors; potential Cdc28p substrate 2.08237351973711 171.98218536377 319.275894165039 CDC20 22 // mitotic spindle elongation // traceable author statement /// 70 // mitotic sister chromatid segregation // traceable author statement /// 7091 // mitotic metaphase/anaphase transition // traceable author statement /// 7092 // anaphase-promoting complex activation during mitotic cell cycle // inferred from mutant phenotype /// 8054 // cyclin catabolism // traceable author statement 5680 // anaphase-promoting complex // traceable author statement 8047 // enzyme activator activity // traceable author statement 309.574615478516 148.664306640625 195.300064086914 328.977172851563 0.00415039015933871 0.00195312988944352 0.00415039015933871 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL116W /GEN=CDC20 /DB_XREF=GI:6321322 /SEG=NC_001139:+289810,291642 /DEF=Cell-cycle regulated activator of anaphase-promoting complex/cyclosome (APC/C), which is required for metaphase/anaphase transition; directs ubiquitination of mitotic cyclins, Pds1p, and other anaphase inhibitors; potential Cdc28p substrate /NOTE=Cdc20p; go_component: anaphase-promoting complex [goid GO:0005680] [evidence TAS] [pmid 10465783]; go_function: enzyme activator activity [goid GO:0008047] [evidence TAS] [pmid 10465783]; go_process: cyclin catabolism [goid GO:0008054] [evidence TAS] [pmid 10465783]; go_process: mitotic metaphase/anaphase transition [goid GO:0007091] [evidence TAS] [pmid 10465783]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence TAS] [pmid 10465783]; go_process: mitotic spindle elongation [goid GO:0000022] [evidence TAS] [pmid 10465783]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10465783] --- --- --- --- --- --- S0003084 // CDC20 SGDID:S0003084, Chr VII from 289812-291644, Verified ORF // sgd // 11 // --- /// GENSCAN00000019263 // cdna:Genscan chromosome:SGD1:VII:289812:291644:1 // ensembl // 11 // --- /// GENEFINDER00000021543 // cdna:GeneFinder chromosome:SGD1:VII:289812:291644:1 // ensembl // 11 // --- /// YGL116W // cdna:known chromosome:SGD1:VII:289812:291644:1 gene:YGL116W // ensembl // 11 // --- --- No cerevisiae_gene 1.71738720903032 -2.08237351973711 -1.13618329482079 -1.58512295900091 1.06267489775625 Max fold change below threshold 4 2.08237351973711 Max fold change at or above threshold 0.730768986936111 -1.10811137443177 -0.575158705800117 0.952501093295774 245.629039764404 87.5045012271463 0.356246563155059 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772626_at YJR149W.S1 Hypothetical protein 2.08213079329293 1308.47998046875 791.947814941406 --- --- 5737 // cytoplasm // inferred from direct assay --- 728.129821777344 1100.8984375 1516.0615234375 855.765808105469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR149W /GEN=BAT2 /DB_XREF=GI:6322609 /SEG=NC_001142:+707075,708289 /DEF=Hypothetical ORF /NOTE=Yjr149wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003910 // YJR149W SGDID:S0003910, Chr X from 707075-708289, Uncharacterized ORF // sgd // 10 // --- /// GENEFINDER00000024393 // cdna:GeneFinder chromosome:SGD1:X:707117:708289:1 // ensembl // 10 // --- /// GENSCAN00000024252 // cdna:Genscan chromosome:SGD1:X:707198:708289:1 // ensembl // 10 // --- /// YJR149W // cdna:known chromosome:SGD1:X:707075:708289:1 gene:YJR149W // ensembl // 10 // --- --- No cerevisiae_gene 1.35595065047433 1.51195350687977 1.27328765509952 2.08213079329293 1.17529289765466 Max fold change below threshold 4 2.08213079329293 Max fold change at or above threshold -0.928319362217613 0.146084340000938 1.34267852132976 -0.560443499113081 1050.21389770508 346.953956834774 0.330365040486453 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779007_at YOR141C.S1 Nuclear actin-related protein involved in chromatin remodeling, component of chromatin-remodeling enzyme complexes 2.08184567305483 1376.63433837891 766.651794433594 ARP8 --- 5634 // nucleus // inferred from direct assay /// 31011 // INO80 complex // inferred from physical interaction --- 730.435180664063 1232.61535644531 1520.6533203125 802.868408203125 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR141C /GEN=ARP8 /DB_XREF=GI:6324715 /SEG=NC_001147:-589942,592587 /DEF=actin-related protein /NOTE=Arp8p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11011149]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005667 // ARP8 SGDID:S0005667, Chr XV from 592587-589942, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017566 // cdna:Genscan chromosome:SGD1:XV:589942:592587:-1 // ensembl // 10 // --- /// GENEFINDER00000022677 // cdna:GeneFinder chromosome:SGD1:XV:589942:592587:-1 // ensembl // 10 // --- /// YOR141C // cdna:known chromosome:SGD1:XV:589942:592587:-1 gene:YOR141C // ensembl // 10 // --- --- No cerevisiae_gene -1.00419367463167 1.687508199324 1.28830970674622 2.08184567305483 1.09916448366193 Max fold change below threshold 4 2.08184567305483 Max fold change at or above threshold -0.916086566614562 0.43218389335055 1.20551804065427 -0.721615367390262 1071.64306640625 372.462492276397 0.34756207915892 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778904_at SPAC6B12.02c.S1 --- 2.08144414615679 --- --- --- --- 3.09885048866272 6.45008420944214 3.38984322547913 4.62028551101685 0.780517995357513 0.5 0.149657994508743 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6B12.02c /DEF=conserved fungal protein --- --- --- --- --- --- SPAC6B12.02c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.26383107978822 2.08144414615679 -1.61021719097182 1.09390344512619 1.49096754681143 Max fold change below threshold 4 2.08144414615679 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770519_at YHL018W.S1 Hypothetical protein 2.08070399684976 29.1482906341553 70.0735054016113 --- --- 5739 // mitochondrion // inferred from direct assay --- 60.2278060913086 29.3507022857666 28.9458789825439 79.9192047119141 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL018W /GEN=APM2 /DB_XREF=GI:6321769 /SEG=NC_001140:+69704,70066 /DEF=Hypothetical ORF /NOTE=Yhl018wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001010 // YHL018W SGDID:S0001010, Chr VIII from 69704-70066, Uncharacterized ORF // sgd // 11 // --- /// YHL018W // cdna:known chromosome:SGD1:VIII:69704:70066:1 gene:YHL018W // ensembl // 11 // --- --- No cerevisiae_gene -1.2001396533174 -2.05200562170247 2.01821544710349 -2.08070399684976 1.32694862885678 Max fold change below threshold 4 2.08070399684976 Max fold change at or above threshold 0.425376702669345 -0.811744360633131 -0.827963998280706 1.21433165624449 49.6108980178833 24.9588376768204 0.503091834133369 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777759_at YHR194W.S1 Mitochondrial inner membrane protein with similarity to Mdm32p, required for normal mitochondrial morphology and inheritance; interacts genetically with MMM1, MDM10, MDM12, and MDM34 2.08039036125588 517.106552124023 1074.54949951172 MDM31 1 // mitochondrion inheritance // inferred from mutant phenotype /// 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5743 // mitochondrial inner membrane // inferred from direct assay --- 1035.97973632813 497.973724365234 536.239379882813 1113.11926269531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR194W /GEN=MDM31 /DB_XREF=GI:6321988 /SEG=NC_001140:+488655,490394 /DEF=Mitochondrial Distribution and Morphology /NOTE=Mdm31p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence IMP] [pmid 11907266] --- --- --- --- --- S0001237 // span:121-143,559-578 // numtm:2 S0001237 // MDM31 SGDID:S0001237, Chr VIII from 488656-490395, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020278 // cdna:GeneFinder chromosome:SGD1:VIII:488656:490395:1 // ensembl // 11 // --- /// GENSCAN00000016716 // cdna:Genscan chromosome:SGD1:VIII:489544:490395:1 // ensembl // 11 // --- /// YHR194W // cdna:known chromosome:SGD1:VIII:488656:490395:1 gene:YHR194W // ensembl // 11 // --- --- No cerevisiae_gene -1.4608530194491 -2.08039036125588 1.20588055775441 -1.9319352050469 1.07446045869642 Max fold change below threshold 4 2.08039036125588 Max fold change at or above threshold 0.741772103191709 -0.920001823696301 -0.801808221356452 0.980037941861044 795.828025817871 323.754033721308 0.406814064368475 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778435_at SPCC550.02c.S1 --- 2.08037814376001 --- --- --- --- 7.50759410858154 10.9003143310547 10.5131883621216 3.60876417160034 0.0805663987994194 0.014160200022161 0.129638999700546 0.171387001872063 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC550.02c /GEN=cwf5 /DEF=RNA-binding protein --- --- --- --- --- --- SPCC550.02c // |cwf5|ecm2|RNA-binding protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.95034479751469 1.45190512078898 1.11696429104492 1.40034053653813 -2.08037814376001 Max fold change below threshold 4 2.08037814376001 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1774648_at YKR036C.S1 WD40 repeat-containing protein associated with the CCR4-NOT complex, interacts in a Ccr4p-dependent manner with Ssn2p 2.08011837173253 165.39266204834 296.654174804688 CAF4 6355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 6355 // regulation of transcription, DNA-dependent // inferred from genetic interaction /// 6355 // regulation of transcription, DNA-dependent // inferred from physical interaction 5739 // mitochondrion // inferred from direct assay /// 30014 // CCR4-NOT complex // inferred from physical interaction 5515 // protein binding // inferred from sequence similarity /// 5515 // protein binding // inferred from physical interaction 267.988922119141 128.83349609375 201.95182800293 325.319427490234 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR036C /GEN=CAF4 /DB_XREF=GI:6322889 /SEG=NC_001143:-508344,510323 /DEF=CCR4 associated factor /NOTE=Caf4p; go_component: CCR4-NOT complex [goid GO:0030014] [evidence IPI] [pmid 11113136]; go_function: protein binding [goid GO:0005515] [evidence IPI,ISS] [pmid 11113136]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence IGI,IMP,IPI] [pmid 11113136] --- --- --- --- scop // a.4.5.DNA-binding protein Mj223 // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; DNA-binding protein Mj223 // 1.79999995231628 --- S0001744 // CAF4 SGDID:S0001744, Chr XI from 510323-508344, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018447 // cdna:Genscan chromosome:SGD1:XI:508344:510323:-1 // ensembl // 11 // --- /// GENEFINDER00000023016 // cdna:GeneFinder chromosome:SGD1:XI:508344:509345:-1 // ensembl // 11 // --- /// YKR036C // cdna:known chromosome:SGD1:XI:508344:510323:-1 gene:YKR036C // ensembl // 11 // --- --- No cerevisiae_gene -1.13633770892907 -2.08011837173253 1.12416350764412 -1.32699428754491 1.2139286389816 Max fold change below threshold 4 2.08011837173253 Max fold change at or above threshold 0.436186966392049 -1.20582455980595 -0.343040066233008 1.11267765964691 231.023418426514 84.7469240046068 0.366832611956887 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779188_at SPAC1F7.12.S1 --- 2.0798400015339 --- --- --- --- 3.31035256385803 5.91302251815796 2.28919291496277 1.59163808822632 0.805419981479645 0.601073980331421 0.725830018520355 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F7.12 /GEN=yakC /DEF=aldoketo reductase --- --- --- --- --- --- SPAC1F7.12 // |yakC|SPAC21E11.01|aldo/keto reductase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.66426604967725 1.78622137796303 -1.2480088395748 -1.4460784594521 -2.0798400015339 Max fold change below threshold 2 2.0798400015339 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776282_at YIL095W.S1 Protein serine/threonine kinase; regulates the organization and function of the actin cytoskeleton through the phosphorylation of the Pan1p-Sla1p-End3p protein complex 2.07962199767369 91.6410980224609 190.137893676758 PRK1 147 // actin cortical patch assembly // traceable author statement /// 910 // cytokinesis // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from direct assay /// 7015 // actin filament organization // inferred from mutant phenotype /// 30100 // regulation of endocytosis // inferred from mutant phenotype 30479 // actin cortical patch // inferred from direct assay 4674 // protein serine/threonine kinase activity // inferred from direct assay 184.081024169922 88.5165786743164 94.7656173706055 196.194763183594 0.000244141003349796 0.00195312988944352 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL095W /GEN=PRK1 /DB_XREF=GI:6322096 /SEG=NC_001141:+183934,186366 /DEF=Protein serine/threonine kinase; regulates the organization and function of the actin cytoskeleton through the phosphorylation of the Pan1p-Sla1p-End3p protein complex /NOTE=Prk1p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10652251]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence IDA] [pmid 9885245]; go_process: actin cortical patch assembly [goid GO:0000147] [evidence TAS] [pmid 10652251]; go_process: actin filament organization [goid GO:0007015] [evidence IMP] [pmid 9885245]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 9885245]; go_process: regulation of endocytosis [goid GO:0030100] [evidence IMP] [pmid 12956961] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-34 /// hanks // 1.8.7 // AGC group; AGC VIII Flowering plant PVPK1 homologs; PsPK5 // 1.0E-52 --- --- S0001357 // PRK1 SGDID:S0001357, Chr IX from 183934-186366, Verified ORF // sgd // 11 // --- /// U24167 // Saccharomyces cerevisiae PAK1 mRNA, complete cds. // gb // 10 // --- /// GENSCAN00000016405 // cdna:Genscan chromosome:SGD1:IX:183934:186366:1 // ensembl // 11 // --- /// YIL095W // cdna:known chromosome:SGD1:IX:183934:186366:1 gene:YIL095W // ensembl // 11 // --- --- No cerevisiae_gene -1.41650117833018 -2.07962199767369 1.17820919776252 -1.94248746831908 1.06580656028125 Max fold change below threshold 4 2.07962199767369 Max fold change at or above threshold 0.755905880394515 -0.916591692996438 -0.807225683479329 0.967911496081252 140.889495849609 57.1387648125854 0.405557309067082 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Sc-EAF5-3_at AFFX-r2-Sc-EAF5-3 Esa1p-associated factor, subunit of the NuA4 acetyltransferase complex 2.07954896443963 230.113014221191 470.907669067383 EAF5 --- 5634 // nucleus // inferred from direct assay /// 43189 // H4/H2A histone acetyltransferase complex // inferred from physical interaction --- 458.911010742188 239.547882080078 220.678146362305 482.904327392578 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=EAF5 SGD:YEL018W Esa1p-associated factor, subunit of the NuA4 acetyltransferase complex (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- S0000744 // EAF5 SGDID:S0000744, Chr V from 121471-122310, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016789 // cdna:Genscan chromosome:SGD1:V:121570:122310:1 // ensembl // 11 // --- /// GENEFINDER00000019613 // cdna:GeneFinder chromosome:SGD1:V:121789:122310:1 // ensembl // 11 // --- /// YEL018W // cdna:known chromosome:SGD1:V:121471:122310:1 gene:YEL018W // ensembl // 11 // --- --- AFFX_control cerevisiae_gene -1.53525724468337 -1.9157381261621 -1.24561674098212 -2.07954896443963 1.05228315749406 Max fold change below threshold 4 2.07954896443963 Max fold change at or above threshold 0.776618961519821 -0.794972492620069 -0.930161644857272 0.948515175957519 350.510341644287 139.580250378852 0.39822006313441 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 No No 3 < x
1776657_at SPAC23H4.18c.S1 --- 2.07935904760146 --- --- --- --- 2.40246152877808 2.02719378471375 4.9573130607605 1.15538561344147 0.601073980331421 0.601073980331421 0.633789002895355 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H4.18c /GEN=pip1 /DEF=SCF ubiquitin ligase complex --- --- --- --- --- --- AF179228 // Schizosaccharomyces pombe pop-interacting protein 1 (pip1) mRNA, complete cds. // gb // 11 // --- /// SPAC23H4.18c // |rbx1|pip1|RING-box protein 1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.04319072581037 -1.18511685803995 2.06874504175692 2.06343077771649 -2.07935904760146 Max fold change below threshold 1 2.07935904760146 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773267_at YOL069W.S1 Component of the evolutionarily conserved kinetochore-associated Ndc80 complex (Ndc80p-Nuf2p-Spc24p-Spc25p); involved in chromosome segregation, spindle checkpoint activity and kinetochore clustering 2.07926962142516 105.826641082764 90.6357612609863 NUF2 7020 // microtubule nucleation // inferred from physical interaction /// 7059 // chromosome segregation // inferred from genetic interaction 778 // condensed nuclear chromosome kinetochore // inferred from physical interaction /// 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 778 // condensed nuclear chromosome kinetochore // inferred from mutant phenotype /// 780 // condensed nuclear chromosome, pericentric region // inferred from direct assay /// 780 // condensed nuclear chromosome, pericentric region // inferred from genetic interaction /// 780 // condensed nuclear chromosome, pericentric region // inferred from physical interaction /// 5816 // spindle pole body // inferred from direct assay /// 5876 // spindle microtubule // inferred from direct assay /// 31262 // Ndc80 complex // inferred from direct assay /// 31262 // Ndc80 complex // inferred from physical interaction 5200 // structural constituent of cytoskeleton // inferred from physical interaction 75.1337738037109 104.210411071777 107.44287109375 106.137748718262 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL069W /GEN=NUF2 /DB_XREF=GI:6324503 /SEG=NC_001147:+198941,200296 /DEF=Spindle pole body protein, required for chromosome segregation during mitosis; part of a centromeric complex along with Tid3p, Spc25p, and Spc24p /NOTE=Nuf2p; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IDA,IMP,IPI] [pmid 11179222]; go_component: condensed nuclear chromosome, pericentric region [goid GO:0000780] [evidence IDA,IGI,IPI] [pmid 11266451]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9585415]; go_process: chromosome segregation [goid GO:0007059] [evidence IGI] [pmid 11266451]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752] --- --- --- --- --- --- S0005430 // NUF2 SGDID:S0005430, Chr XV from 198941-200296, Verified ORF // sgd // 11 // --- /// GENSCAN00000017411 // cdna:Genscan chromosome:SGD1:XV:198941:200296:1 // ensembl // 11 // --- /// GENEFINDER00000022855 // cdna:GeneFinder chromosome:SGD1:XV:198941:200296:1 // ensembl // 11 // --- /// YOL069W // cdna:known chromosome:SGD1:XV:198941:200296:1 gene:YOL069W // ensembl // 11 // --- --- No cerevisiae_gene 1.5079743629476 1.38699822724238 2.07926962142516 1.43002095667985 1.41265030817631 Max fold change below threshold 4 2.07926962142516 Max fold change at or above threshold -1.49445439393773 0.386868042260902 0.596015321135929 0.511571030540896 98.231201171875 15.4554247100876 0.157337226112559 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771706_at YBR154C.S1 RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III; contacts DNA and affects transactivation 2.07886069370765 506.579071044922 666.934753417969 RPB5 6360 // transcription from RNA polymerase I promoter // traceable author statement /// 6366 // transcription from RNA polymerase II promoter // traceable author statement /// 6383 // transcription from RNA polymerase III promoter // traceable author statement 5665 // DNA-directed RNA polymerase II, core complex // traceable author statement /// 5666 // DNA-directed RNA polymerase III complex // traceable author statement /// 5736 // DNA-directed RNA polymerase I complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 644.867980957031 412.796630859375 600.361511230469 689.001525878906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR154C /GEN=RPB5 /DB_XREF=GI:6319630 /SEG=NC_001134:-548318,548965 /DEF=RNA polymerase subunit, found in RNA polymerase complexes I, II, and III /NOTE=Rpb5p; go_component: DNA-directed RNA polymerase I complex [goid GO:0005736] [evidence TAS] [pmid 9774381]; go_component: DNA-directed RNA polymerase II, core complex [goid GO:0005665] [evidence TAS] [pmid 9774381]; go_component: DNA-directed RNA polymerase III complex [goid GO:0005666] [evidence TAS] [pmid 9774381]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 9774381]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence TAS]; go_process: transcription from Pol III promoter [goid GO:0006383] [evidence TAS] --- --- --- --- --- --- S0000358 // RPB5 SGDID:S0000358, Chr II from 549003-548356, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021262 // cdna:Genscan chromosome:SGD1:II:548356:549003:-1 // ensembl // 11 // --- /// GENEFINDER00000022227 // cdna:GeneFinder chromosome:SGD1:II:548356:549003:-1 // ensembl // 11 // --- /// YBR154C // cdna:known chromosome:SGD1:II:548356:549003:-1 gene:YBR154C // ensembl // 11 // --- --- No cerevisiae_gene 2.07886069370765 -1.56219293654244 -1.12923695640162 -1.07413278315484 1.06843810861314 Max fold change below threshold 4 2.07886069370765 Max fold change at or above threshold 0.478326997773588 -1.4319113543323 0.111982917158969 0.841601439399741 586.756912231445 121.488163946565 0.207050247579605 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773666_at YHR034C.S1 Protein of unresolved function; may function in protein folding and/or rRNA processing, interacts with a chaperone (Hsp82p), two chromatin remodeling factors (Rvb1p, Rvb2p) and two rRNA processing factors (Rrp43p, Nop58p) 2.07870597152203 418.338333129883 693.725921630859 PIH1 6364 // rRNA processing // inferred from mutant phenotype /// 6364 // rRNA processing // inferred from physical interaction /// 6364 // rRNA processing // inferred from genetic interaction /// 6457 // protein folding // inferred from mutant phenotype /// 6457 // protein folding // inferred from genetic interaction /// 6457 // protein folding // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 5737 // cytoplasm // inferred from direct assay --- 680.540283203125 424.367706298828 412.308959960938 706.911560058594 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR034C /GEN=RRM3 /DB_XREF=GI:6321823 /SEG=NC_001140:-176957,177991 /DEF=Protein possibly involved in protein synthesis /NOTE=Yhr034cp --- --- --- --- --- --- S0001076 // PIH1 SGDID:S0001076, Chr VIII from 177991-176957, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016582 // cdna:Genscan chromosome:SGD1:VIII:176873:177991:-1 // ensembl // 11 // --- /// GENEFINDER00000020247 // cdna:GeneFinder chromosome:SGD1:VIII:176873:177991:-1 // ensembl // 11 // --- /// YHR034C // cdna:known chromosome:SGD1:VIII:176957:177991:-1 gene:YHR034C // ensembl // 11 // --- --- No cerevisiae_gene -2.07870597152203 -1.60365709525481 1.15460953623919 -1.65055904501226 1.03875050089812 Max fold change below threshold 4 2.07870597152203 Max fold change at or above threshold 0.780932647226211 -0.825817748413918 -0.901451899748423 0.94633700093613 556.032127380371 159.435203874487 0.286737395239431 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773867_at SPAP32A8.02.S1 --- 2.07864276021598 --- --- --- --- 12.3024034500122 25.572301864624 23.9221649169922 9.44010448455811 0.018554700538516 0.0107421996071935 0.018554700538516 0.0239257998764515 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP32A8.02 /DEF=aldoketo reductase --- --- --- --- --- --- SPAP32A8.02 // |||aldo/keto reductase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.68448223573797 2.07864276021598 -1.26314960258293 1.94451149437539 -1.30320628019914 Max fold change below threshold 4 2.07864276021598 Max fold change at or above threshold PAPAPP No 4 0 PPPP 0 4 0 No No 3 < x
1777017_at YGR237C.S1 Hypothetical protein 2.07861037144619 633.888519287109 1380.15100097656 --- --- 5737 // cytoplasm // inferred from direct assay --- 1256.48901367188 663.291931152344 604.485107421875 1503.81298828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR237C /GEN=YHB1 /DB_XREF=GI:6321676 /SEG=NC_001139:-963302,965659 /DEF=Hypothetical ORF /NOTE=Ygr237cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003469 // YGR237C SGDID:S0003469, Chr VII from 965660-963303, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000019522 // cdna:Genscan chromosome:SGD1:VII:963303:964988:-1 // ensembl // 10 // --- /// GENEFINDER00000021634 // cdna:GeneFinder chromosome:SGD1:VII:963303:965660:-1 // ensembl // 10 // --- /// YGR237C // cdna:known chromosome:SGD1:VII:963303:965660:-1 gene:YGR237C // ensembl // 10 // --- --- No cerevisiae_gene -1.30923327907215 -1.89432277803978 1.2437267551902 -2.07861037144619 1.19683735545495 Max fold change below threshold 4 2.07861037144619 Max fold change at or above threshold 0.562909274113295 -0.775596912075301 -0.908290243976074 1.12097788193808 1007.01976013184 443.178439248506 0.440089119195125 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778392_at YBR153W.S1 Diaminohydroxyphoshoribosylaminopyrimidine deaminase; catalyzes the second step of the riboflavin biosynthesis pathway 2.078336574279 359.398803710938 704.794586181641 RIB7 9231 // riboflavin biosynthesis // inferred from mutant phenotype --- 8835 // diaminohydroxyphosphoribosylaminopyrimidine deaminase activity // inferred from genetic interaction /// 8835 // diaminohydroxyphosphoribosylaminopyrimidine deaminase activity // inferred from mutant phenotype 719.594482421875 346.235778808594 372.561828613281 689.994689941406 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR153W /GEN=RIB7 /DB_XREF=GI:6319629 /SEG=NC_001134:+547416,548150 /DEF=Protein involved in the biosynthesis of riboflavin, second step in the riboflavin biosynthesis pathway /NOTE=Rib7p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity [goid GO:0008835] [evidence IGI,IMP] [pmid 4555411]; go_process: vitamin B2 biosynthesis [goid GO:0009231] [evidence IMP] [pmid 5366000] --- --- --- --- --- --- S0000357 // RIB7 SGDID:S0000357, Chr II from 547454-548188, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022398 // cdna:GeneFinder chromosome:SGD1:II:547454:548188:1 // ensembl // 11 // --- /// YBR153W // cdna:known chromosome:SGD1:II:547454:548188:1 gene:YBR153W // ensembl // 11 // --- --- No cerevisiae_gene -1.07266169462707 -2.078336574279 -1.05676303690852 -1.93147667623463 -1.04289858010789 Max fold change below threshold 4 2.078336574279 Max fold change at or above threshold 0.937165472530177 -0.928983939715849 -0.797399107504027 0.789217574689699 532.096694946289 200.06903046628 0.376001265120573 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775960_at YBR039W.S1 Gamma subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis 2.0782999446794 5978.3916015625 3149.37902832031 ATP3 15986 // ATP synthesis coupled proton transport // inferred from mutant phenotype 5756 // proton-transporting ATP synthase, central stalk (sensu Eukaryota) // inferred from mutant phenotype /// 5756 // proton-transporting ATP synthase, central stalk (sensu Eukaryota) // traceable author statement 46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // inferred from mutant phenotype 3285.62377929688 6828.51171875 5128.271484375 3013.13427734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR039W /GEN=ATP3 /DB_XREF=GI:6319513 /SEG=NC_001134:+315537,316472 /DEF=Gamma subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis /NOTE=Atp3p; go_component: proton-transporting ATP synthase, central stalk (sensu Eukarya) [goid GO:0005756] [evidence TAS] [pmid 10838056]; go_component: proton-transporting ATP synthase, central stalk (sensu Eukarya) [goid GO:0005756] [evidence IMP] [pmid 7929329]; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism [goid GO:0046933] [evidence IMP] [pmid 7929329]; go_process: ATP synthesis coupled proton transport [goid GO:0015986] [evidence IMP] [pmid 7929329] --- --- --- --- --- --- S0000243 // ATP3 SGDID:S0000243, Chr II from 315575-316510, Verified ORF // sgd // 11 // --- /// GENSCAN00000021171 // cdna:Genscan chromosome:SGD1:II:315575:316510:1 // ensembl // 11 // --- /// GENEFINDER00000022237 // cdna:GeneFinder chromosome:SGD1:II:315617:316510:1 // ensembl // 11 // --- /// YBR039W // cdna:known chromosome:SGD1:II:315575:316510:1 gene:YBR039W // ensembl // 11 // --- --- No cerevisiae_gene -1.29983630729028 2.0782999446794 1.11641736479982 1.5608212713485 -1.09043390598355 Max fold change below threshold 4 2.0782999446794 Max fold change at or above threshold -0.718856687066222 1.2735592746 0.317394180041925 -0.872096767575709 4563.88531494141 1778.18688849002 0.38962129102336 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775234_at YBR200W.S1 Protein containing SH3-domains, involved in establishing cell polarity and morphogenesis; functions as a scaffold protein for complexes that include Cdc24p, Ste5p, Ste20p, and Rsr1p 2.07773762009606 328.444290161133 619.924377441406 BEM1 753 // cellular morphogenesis during conjugation with cellular fusion // inferred from genetic interaction /// 753 // cellular morphogenesis during conjugation with cellular fusion // inferred from mutant phenotype /// 753 // cellular morphogenesis during conjugation with cellular fusion // traceable author statement /// 30468 // establishment of cell polarity (sensu Fungi) // traceable author statement 131 // incipient bud site // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 43332 // mating projection tip // traceable author statement 5515 // protein binding // inferred from direct assay /// 5515 // protein binding // inferred from mutant phenotype 562.760192871094 270.852386474609 386.036193847656 677.088562011719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR200W /GEN=BEM1 /DB_XREF=GI:6319677 /SEG=NC_001134:+620829,622484 /DEF=SH3-domain protein that binds Cdc24p, Ste5p and Ste20p, and the Rsr1p/Bud2p/Bup5p GTPase /NOTE=Bem1p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 11927541]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 11927541]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 9128251]; go_function: protein binding [goid GO:0005515] [evidence IDA,IMP] [pmid 11927541]; go_process: cellular morphogenesis during conjugation with cellular fusion [goid GO:0000753] [evidence IGI,IMP,TAS] [pmid 10087263]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence TAS] [pmid 11113154] --- --- --- --- --- --- S0000404 // BEM1 SGDID:S0000404, Chr II from 620867-622522, Verified ORF // sgd // 11 // --- /// GENSCAN00000021300 // cdna:Genscan chromosome:SGD1:II:620867:622522:1 // ensembl // 11 // --- /// GENEFINDER00000022302 // cdna:GeneFinder chromosome:SGD1:II:620867:622522:1 // ensembl // 11 // --- /// YBR200W // cdna:known chromosome:SGD1:II:620867:622522:1 gene:YBR200W // ensembl // 11 // --- --- No cerevisiae_gene -1.62444744815747 -2.07773762009606 1.29662787276241 -1.45779126890154 1.20315646093826 Max fold change below threshold 4 2.07773762009606 Max fold change at or above threshold 0.489751279168813 -1.12425758378044 -0.487386346031398 1.12189265064303 474.18433380127 180.858862114973 0.381410454169014 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777899_at YIL035C.S1 Alpha subunit of protein kinase casein kinase-2 (CK2), a spontaneously active, ubiquitous, pleiotropic enzyme that phosphorylates seryl/threonyl residues specified by multiple negatively charged side chains (consensus S/T-x-x-E/D/S(P)/T(P) 2.07751651713162 904.216400146484 1804.27642822266 CKA1 82 // G1/S transition of mitotic cell cycle // inferred from physical interaction /// 86 // G2/M transition of mitotic cell cycle // inferred from physical interaction /// 501 // flocculation (sensu Saccharomyces) // inferred from mutant phenotype /// 6356 // regulation of transcription from RNA polymerase I promoter // inferred from direct assay /// 6359 // regulation of transcription from RNA polymerase III promoter // inferred from direct assay /// 6468 // protein amino acid phosphorylation // inferred from direct assay /// 6873 // cell ion homeostasis // inferred from physical interaction /// 6974 // response to DNA damage stimulus // inferred from direct assay /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype 5956 // protein kinase CK2 complex // inferred from direct assay 4682 // protein kinase CK2 activity // inferred from direct assay 1865.84948730469 898.115356445313 910.317443847656 1742.70336914063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL035C /GEN=CKA1 /DB_XREF=GI:6322154 /SEG=NC_001141:-287789,288907 /DEF=alpha subunit of protein kinase CK2 /NOTE=Cka1p; go_component: protein kinase CK2 complex [goid GO:0005956] [evidence IDA] [pmid 9427841]; go_function: protein kinase CK2 activity [goid GO:0004682] [evidence IDA] [pmid 9427841]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IPI] [pmid 9427841]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence IPI] [pmid 9427841]; go_process: cell ion homeostasis [goid GO:0006873] [evidence IPI] [pmid 9427841]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IMP] [pmid 9427841]; go_process: flocculation (sensu Saccharomyces) [goid GO:0000501] [evidence IMP] [pmid 9427841]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 9427841]; go_process: regulation of transcription from Pol I promoter [goid GO:0006356] [evidence IDA] [pmid 11551505]; go_process: regulation of transcription from Pol III promoter [goid GO:0006359] [evidence IDA] [pmid 11551505]; go_process: response to DNA damage stimulus [goid GO:0006974] [evidence IDA] [pmid 11551505] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 8.0E-59 /// hanks // 3.1.6 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk5 // 8.0E-55 --- --- S0001297 // CKA1 SGDID:S0001297, Chr IX from 288907-287789, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016450 // cdna:Genscan chromosome:SGD1:IX:287789:288907:-1 // ensembl // 11 // --- /// YIL035C // cdna:known chromosome:SGD1:IX:287789:288907:-1 gene:YIL035C // ensembl // 11 // --- --- No cerevisiae_gene 1.02943734719944 -2.07751651713162 -1.17689326687105 -2.04966904667702 -1.07066384351158 Max fold change below threshold 4 2.07751651713162 Max fold change at or above threshold 0.979894944340011 -0.873647053582535 -0.850275880921216 0.744027990163739 1354.24641418457 522.099921093784 0.385528007034196 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774917_at YPR023C.S1 Esa1p-associated factor, nonessential component of the NuA4 acetyltransferase complex, homologous to Drosophila dosage compensation protein MSL3 2.07737286453642 4403.59155273438 2238.02954101563 EAF3 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 16573 // histone acetylation // inferred from direct assay 123 // histone acetyltransferase complex // inferred from direct assay /// 43189 // H4/H2A histone acetyltransferase complex // inferred from physical interaction 4402 // histone acetyltransferase activity // inferred from direct assay 2254.79516601563 4684.05029296875 4123.1328125 2221.26391601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR023C /GEN=EAF3 /DB_XREF=GI:6325280 /SEG=NC_001148:-608821,610026 /DEF=Esa1p-associated factor, nonessential component of the NuA4 acetyltransferase complex, homologous to Drosophila dosage compensation protein MSL3 /NOTE=Eaf3p; go_component: histone acetyltransferase complex [goid GO:0000123] [evidence IDA] [pmid 11036083]; go_function: histone acetyltransferase activity [goid GO:0004402] [evidence IDA] [pmid 11036083]; go_process: histone acetylation [goid GO:0016573] [evidence IDA] [pmid 11036083]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP] [pmid 11036083] --- --- --- --- --- --- S0006227 // EAF3 SGDID:S0006227, Chr XVI from 610028-608823, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017203 // cdna:Genscan chromosome:SGD1:XVI:608823:610028:-1 // ensembl // 11 // --- /// GENEFINDER00000020833 // cdna:GeneFinder chromosome:SGD1:XVI:608823:609920:-1 // ensembl // 11 // --- /// YPR023C // cdna:known chromosome:SGD1:XVI:608823:610028:-1 gene:YPR023C // ensembl // 11 // --- --- No cerevisiae_gene -1.5987627975455 2.07737286453642 1.11429461149475 1.82860637393766 -1.01509557228127 Max fold change below threshold 4 2.07737286453642 Max fold change at or above threshold -0.838616903899254 1.07243846164764 0.63117383333199 -0.864995391080371 3320.810546875 1271.15894743214 0.382785747482145 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770871_at YBR135W.S1 Subunit of the Cdc28 protein kinase, required for mitotic proteolysis, may also be involved in the proteolysis of the G1 cyclins 2.07718411399788 445.824417114258 831.978057861328 CKS1 74 // regulation of cell cycle // traceable author statement /// 6350 // transcription // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 30295 // protein kinase activator activity // inferred from direct assay 759.029052734375 365.412506103516 526.236328125 904.927062988281 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR135W /GEN=CKS1 /DB_XREF=GI:6319611 /SEG=NC_001134:+504810,505262 /DEF=subunit of the Cdc28 protein kinase /NOTE=Cks1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: protein kinase activator activity [goid GO:0030295] [evidence IDA] [pmid 10913169]; go_process: regulation of cell cycle [goid GO:0000074] [evidence TAS] --- --- --- --- --- --- S0000339 // CKS1 SGDID:S0000339, Chr II from 504848-505300, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022151 // cdna:GeneFinder chromosome:SGD1:II:504848:505300:1 // ensembl // 11 // --- /// YBR135W // cdna:known chromosome:SGD1:II:504848:505300:1 gene:YBR135W // ensembl // 11 // --- --- No cerevisiae_gene 1.14537663924184 -2.07718411399788 -1.27490643185405 -1.44237296470737 1.19221663482882 Max fold change below threshold 4 2.07718411399788 Max fold change at or above threshold 0.500692097877414 -1.1398995843015 -0.469586745669468 1.10879423209356 638.901237487793 239.923529362337 0.375525222498761 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779384_at SPBC577.09.S1 --- 2.07710463907488 --- --- --- --- 3.57389283180237 5.92606830596924 7.42334938049316 4.42224550247192 0.334473013877869 0.129638999700546 0.24609400331974 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC577.09 /DEF=WD repeat protein --- --- --- --- --- --- SPBC577.09 // |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.5392119826528 1.65815501047932 1.08577002003937 2.07710463907488 1.23737496074881 Max fold change below threshold 4 2.07710463907488 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776299_at YGL067W.S1 NADH diphosphatase (pyrophosphatase), hydrolyzes the pyrophosphate linkage in NADH and related nucleotides; localizes to peroxisomes 2.07707857410978 574.908508300781 1121.19262695313 NPY1 6734 // NADH metabolism // inferred from direct assay 5737 // cytoplasm // inferred from direct assay /// 5777 // peroxisome // inferred from direct assay 210 // NAD+ diphosphatase activity // inferred from direct assay 1109.79357910156 534.305053710938 615.511962890625 1132.59167480469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL067W /GEN=NPY1 /DB_XREF=GI:6321371 /SEG=NC_001139:+376102,377256 /DEF=NADH diphosphatase (pyrophosphatase), hydrolyzes the pyrophosphate linkage in NADH and related nucleotides; localizes to peroxisomes /NOTE=Npy1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: peroxisome [goid GO:0005777] [evidence IDA] [pmid 11361135]; go_function: NAD+ diphosphatase activity [goid GO:0000210] [evidence IDA] [pmid 11361135]; go_process: NADH metabolism [goid GO:0006734] [evidence IDA] [pmid 11361135] --- --- --- --- --- --- S0003035 // NPY1 SGDID:S0003035, Chr VII from 376104-377258, Verified ORF // sgd // 10 // --- /// GENEFINDER00000021592 // cdna:GeneFinder chromosome:SGD1:VII:376104:377258:1 // ensembl // 10 // --- /// YGL067W // cdna:known chromosome:SGD1:VII:376104:377258:1 gene:YGL067W // ensembl // 10 // --- --- No cerevisiae_gene 1.02906583772474 -2.07707857410978 -1.15455931943267 -1.80304144518921 1.02054264516612 Max fold change below threshold 4 2.07707857410978 Max fold change at or above threshold 0.824981325787049 -0.988886727374121 -0.732932678321599 0.896838079908671 848.050567626953 317.271437901823 0.374118537282068 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777744_at YHR078W.S1 Hypothetical protein 2.0768192379506 1194.11041259766 633.845886230469 --- --- --- --- 591.177673339844 1160.45166015625 1227.76916503906 676.514099121094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR078W /GEN=NMD2 /DB_XREF=GI:6321869 /SEG=NC_001140:+256361,258019 /DEF=Hypothetical ORF /NOTE=Yhr078wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001120 // span:4-22,83-105,125-147,160-182,197-219,324-346,369-386,399-421 // numtm:8 S0001120 // YHR078W SGDID:S0001120, Chr VIII from 256361-258019, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016622 // cdna:Genscan chromosome:SGD1:VIII:256637:258019:1 // ensembl // 11 // --- /// GENEFINDER00000020150 // cdna:GeneFinder chromosome:SGD1:VIII:257045:258019:1 // ensembl // 11 // --- /// YHR078W // cdna:known chromosome:SGD1:VIII:256361:258019:1 gene:YHR078W // ensembl // 11 // --- --- No cerevisiae_gene -1.24194704977063 1.96294906335063 1.32396871520377 2.0768192379506 1.14434987928273 Max fold change below threshold 4 2.0768192379506 Max fold change at or above threshold -0.988674454528114 0.754899951673658 0.961080246788544 -0.727305743934088 913.978149414063 326.498246815013 0.357227628498916 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770441_at SPBC1289.15.S1 --- 2.07590203999746 --- --- --- --- 10.4402494430542 5.51817941665649 8.15482902526855 5.0292592048645 0.366210997104645 0.398925989866257 0.149657994508743 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1289.15 /DEF=glucoprotein (predicted) --- --- --- --- --- --- SPBC1289.15 // ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.59625378717486 -1.89197353959542 -1.86270708937209 -1.28025362772218 -2.07590203999746 Max fold change below threshold 4 2.07590203999746 Max fold change at or above threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1773151_at YLR295C.S1 Subunit h of the F0 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis 2.07549480701563 2415.04089355469 1251.03192138672 ATP14 15986 // ATP synthesis coupled proton transport // inferred from mutant phenotype /// 15986 // ATP synthesis coupled proton transport // inferred from physical interaction 276 // proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota) // inferred from mutant phenotype /// 276 // proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota) // inferred from physical interaction 46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // inferred from mutant phenotype /// 46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // inferred from physical interaction 1216.146484375 2305.97607421875 2524.10571289063 1285.91735839844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR295C /GEN=ATP14 /DB_XREF=GI:6323326 /SEG=NC_001144:-722001,722375 /DEF=Subunit h of the F0 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis /NOTE=Atp14p; go_component: proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukarya) [goid GO:0000276] [evidence IMP,IPI] [pmid 8702761]; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism [goid GO:0046933] [evidence IMP,IPI] [pmid 8702761]; go_process: ATP synthesis coupled proton transport [goid GO:0015986] [evidence IMP,IPI] [pmid 8702761] --- --- --- --- --- --- S0004286 // ATP14 SGDID:S0004286, Chr XII from 722375-722001, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018048 // cdna:Genscan chromosome:SGD1:XII:722001:722375:-1 // ensembl // 11 // --- /// GENEFINDER00000024764 // cdna:GeneFinder chromosome:SGD1:XII:722001:722375:-1 // ensembl // 11 // --- /// YLR295C // cdna:known chromosome:SGD1:XII:722001:722375:-1 gene:YLR295C // ensembl // 11 // --- --- No cerevisiae_gene 1.30261931738795 1.89613348708057 1.34736474311309 2.07549480701563 1.05737045242481 Max fold change below threshold 4 2.07549480701563 Max fold change at or above threshold -0.909178740300356 0.697023365682944 1.01850508014288 -0.806349705525472 1833.0364074707 678.51336129121 0.370158147719199 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775486_s_at YBR302C.S1 Protein involved in salt resistance; interacts with sodium:hydrogen antiporter Nha1p; member of a family of conserved, often subtelomerically-encoded proteins /// Protein of unknown function, member of a family of conserved, often subtelomerically-encoded proteins 2.07535127632004 6911.90625 3861.90368652344 COS3 /// COS2 6883 // sodium ion homeostasis // inferred from mutant phenotype 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5624 // membrane fraction // inferred from direct assay 5515 // protein binding // inferred from mutant phenotype 3961.95776367188 8222.4541015625 5601.3583984375 3761.849609375 0.000488280988065526 0.000488280988065526 0.000488280988065526 0.000488280988065526 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR302C /GEN=COS2 /DB_XREF=GI:6319779 /SEG=NC_001134:-810296,811435 /DEF=Protein of unknown function, member of a family of conserved, often subtelomerically-encoded proteins /NOTE=Cos2p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000506 // span:46-63,73-95,233-255,259-281 // numtm:4 /// S0004601 // span:46-63,73-95,233-255,259-281 // numtm:4 S0000506 // COS2 SGDID:S0000506, Chr II from 811473-810334, reverse complement, Verified ORF // sgd // 10 // --- /// S0004601 // COS3 SGDID:S0004601, Chr XIII from 7244-8383, Verified ORF // sgd // 10 // --- /// GENSCAN00000021380 // cdna:Genscan chromosome:SGD1:II:810334:811029:-1 // ensembl // 10 // --- /// GENSCAN00000018604 // cdna:Genscan chromosome:SGD1:XIII:7688:8383:1 // ensembl // 10 // --- /// YBR302C // cdna:known chromosome:SGD1:II:810334:811473:-1 gene:YBR302C // ensembl // 10 // --- /// YML132W // cdna:known chromosome:SGD1:XIII:7244:8383:1 gene:YML132W // ensembl // 10 // --- --- No cerevisiae_gene -1.15631334206853 2.07535127632004 -1.05033283365191 1.41378549004174 -1.05319408670623 Max fold change below threshold 4 2.07535127632004 Max fold change at or above threshold -0.690994775541521 1.37503314550247 0.10399416860576 -0.788032538566712 5386.90496826172 2062.16784124473 0.38281125310257 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772886_at SPAC10F6.06.S1 --- 2.07533378302545 --- --- --- --- 8.41221809387207 12.14222240448 16.7980117797852 11.2090511322021 0.188720703125 0.5 0.194580003619194 0.0239257998764515 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC10F6.06 /GEN=vip1 /DEF=rrm RNA recognition motif --- --- --- --- --- --- Y13635 // Schizosaccharomyces pombe mRNA for VIP1. // gb // 11 // --- /// SPAC10F6.06 // |vip1||rrm RNA recognition motif|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.60915796096748 1.44340318676772 2.07533378302545 1.99685880612413 1.33247272088291 Max fold change below threshold 4 2.07533378302545 Max fold change at or above threshold APAPAP No 4 0 AAAP 3 1 0 No No x = 1
1778406_at YBR059C.S1 Ser-Thr protein kinase, member (with Ark1p and Prk1p) of the Ark kinase family; involved in endocytosis and actin cytoskeleton organization 2.07484588094804 1435.81915283203 1608.91754150391 AKL1 30036 // actin cytoskeleton organization and biogenesis // inferred from mutant phenotype /// 30100 // regulation of endocytosis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 4672 // protein kinase activity // inferred from sequence similarity 1629.74584960938 1365.21411132813 1506.42419433594 1588.08923339844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR059C /GEN=AKL1 /DB_XREF=GI:6319533 /SEG=NC_001134:-356821,360147 /DEF=Ark-family kinase-like protein. This protein is the third member (After Ark1p and Prk1p) of the Ark-family kinases in S. cerevisiae. /NOTE=Akl1p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 14562095]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 10087264]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence IMP] [pmid 12956961]; go_process: regulation of endocytosis [goid GO:0030100] [evidence IMP] [pmid 12956961] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 4.0E-33 /// hanks // 2.1.20 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; PhKgT // 6.0E-49 --- --- S0000263 // AKL1 SGDID:S0000263, Chr II from 360185-356859, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021187 // cdna:Genscan chromosome:SGD1:II:356859:360185:-1 // ensembl // 11 // --- /// GENEFINDER00000022341 // cdna:GeneFinder chromosome:SGD1:II:356859:360146:-1 // ensembl // 11 // --- /// YBR059C // cdna:known chromosome:SGD1:II:356859:360185:-1 gene:YBR059C // ensembl // 11 // --- --- No cerevisiae_gene -2.07484588094804 -1.19376575153029 -1.07958343596114 -1.08186383074377 -1.02623065211631 Max fold change below threshold 4 2.07484588094804 Max fold change at or above threshold 0.920745090618929 -1.34757270219118 -0.136718587324021 0.563546198896269 1522.36834716797 116.620228047294 0.0766044750367023 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777845_at YOR227W.S1 Hypothetical protein 2.07445199262906 942.814147949219 1271.29864501953 --- --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 1224.55139160156 728.934204101563 1156.69409179688 1318.0458984375 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR227W /GEN=ISU2 /DB_XREF=GI:6324801 /SEG=NC_001147:+762825,766565 /DEF=Hypothetical ORF /NOTE=Yor227wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.Replication initiation protein // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Replication initiation protein // 5.90000009536743 --- S0005753 // YOR227W SGDID:S0005753, Chr XV from 762825-766565, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017645 // cdna:Genscan chromosome:SGD1:XV:762825:766565:1 // ensembl // 11 // --- /// GENEFINDER00000022709 // cdna:GeneFinder chromosome:SGD1:XV:763842:766565:1 // ensembl // 11 // --- /// YOR227W // cdna:known chromosome:SGD1:XV:762825:766565:1 gene:YOR227W // ensembl // 11 // --- --- No cerevisiae_gene -2.07445199262906 -1.67992033397701 -1.1745553643144 -1.05866486246098 1.07635000660418 Max fold change below threshold 4 2.07445199262906 Max fold change at or above threshold 0.450835872116689 -1.45087923276694 0.190463037457498 0.809580323192748 1107.05639648438 260.615896790876 0.235413387807975 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772388_at SPAC2G11.09.S1 --- 2.0737622239731 --- --- --- --- 4.10714340209961 1.98052763938904 4.83265686035156 3.55030417442322 0.149657994508743 0.633789002895355 0.0952147990465164 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2G11.09 /DEF=DUF221 --- --- --- --- --- --- SPAC2G11.09 // |||DUF221|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.17188016795132 -2.0737622239731 1.15396159243886 1.17664673161426 -1.15684268173074 Max fold change below threshold 3 2.0737622239731 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777829_at SPAC32A11.01.S1 --- 2.07372639946951 --- --- --- --- 3.05682873725891 2.03788805007935 6.33902645111084 3.33927154541016 0.303710997104645 0.533936023712158 0.334473013877869 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC32A11.01 /DEF=hypothetical protein --- --- --- --- --- --- SPAC32A11.01 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.58085381408034 -1.4999983620984 1.55399812608253 2.07372639946951 1.09239732822079 Max fold change below threshold 3 2.07372639946951 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780117_at YDR523C.S1 Putative protein serine/threonine kinase expressed at the end of meiosis and localized to the prospore membrane, required for correct localization of enzymes involved in spore wall synthesis 2.07334637269482 94.7984504699707 111.810424804688 SPS1 6468 // protein amino acid phosphorylation // inferred from sequence similarity /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 5628 // prospore membrane // inferred from direct assay /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4674 // protein serine/threonine kinase activity // inferred from sequence similarity 106.937675476074 107.78588104248 81.8110198974609 116.683174133301 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR523C /GEN=SPS1 /DB_XREF=GI:6320731 /SEG=NC_001136:-1485554,1487026 /DEF=dispensable for mitosis, involved in middle/late stage of meiosis, required for spore wall formation /NOTE=Sps1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence ISS] [pmid 7958886]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence ISS] [pmid 7958886]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 3023934] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 6.0E-60 /// hanks // 2.1.17 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH // 4.0E-66 scop // a.3.1.Quinoprotein alcohol dehydrogenase, C-terminal domain // All alpha proteins; Cytochrome c; Cytochrome c; Quinoprotein alcohol dehydrogenase, C-terminal domain // 9.5 --- S0002931 // SPS1 SGDID:S0002931, Chr IV from 1487028-1485556, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023445 // cdna:GeneFinder chromosome:SGD1:IV:1485556:1487028:-1 // ensembl // 11 // --- /// GENSCAN00000025507 // cdna:Genscan chromosome:SGD1:IV:1485556:1486782:-1 // ensembl // 11 // --- /// YDR523C // cdna:known chromosome:SGD1:IV:1485556:1487028:-1 gene:YDR523C // ensembl // 11 // --- --- No cerevisiae_gene 2.07334637269482 1.00793177486447 -1.70193530682782 -1.30713045272026 1.09113250885472 Max fold change below threshold 4 2.07334637269482 Max fold change at or above threshold 0.242352087362084 0.298930929335637 -1.43370043057832 0.892417413880593 103.304437637329 14.9915681696478 0.145120272783234 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776835_at YGL079W.S1 Hypothetical protein 2.07323782794151 241.094398498535 261.242477416992 --- --- 5768 // endosome // inferred from direct assay --- 239.563842773438 194.096145629883 288.092651367188 282.921112060547 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL079W /GEN=SCY1 /DB_XREF=GI:6321359 /SEG=NC_001139:+359445,360101 /DEF=Hypothetical ORF /NOTE=Ygl079wp; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003047 // YGL079W SGDID:S0003047, Chr VII from 359447-360103, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000019290 // cdna:Genscan chromosome:SGD1:VII:359447:360103:1 // ensembl // 10 // --- /// GENEFINDER00000021406 // cdna:GeneFinder chromosome:SGD1:VII:359447:360103:1 // ensembl // 10 // --- /// YGL079W // cdna:known chromosome:SGD1:VII:359447:360103:1 gene:YGL079W // ensembl // 10 // --- --- No cerevisiae_gene 1.11318622048227 -1.23425347781123 2.07323782794151 1.20257150675131 1.18098419521561 Max fold change below threshold 4 2.07323782794151 Max fold change at or above threshold -0.26475602528734 -1.30209051076384 0.842416975677398 0.724429560373784 251.168437957764 43.8312788981165 0.174509501490339 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769695_at YDR363W.S1 Protein involved in mating-type locus silencing, interacts with Sir2p; probably functions to recruit or stabilize Sir proteins 2.07245127770654 215.901123046875 256.144248962402 ESC2 30466 // chromatin silencing at silent mating-type cassette // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 249.551040649414 174.915649414063 256.886596679688 262.737457275391 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR363W /GEN=ESC2 /DB_XREF=GI:6320570 /SEG=NC_001136:+1199171,1200541 /DEF=Protein involved in mating-type locus silencing, interacts with Sir2p; probably functions to recruit or stabilize Sir proteins /NOTE=Esc2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11090616]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin silencing at silent mating-type cassette (sensu Fungi) [goid GO:0030466] [evidence IMP] [pmid 11090616] --- --- --- --- --- --- S0002771 // ESC2 SGDID:S0002771, Chr IV from 1199173-1200543, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023492 // cdna:GeneFinder chromosome:SGD1:IV:1199173:1200543:1 // ensembl // 11 // --- /// GENSCAN00000025386 // cdna:Genscan chromosome:SGD1:IV:1199173:1200543:1 // ensembl // 11 // --- /// YDR363W // cdna:known chromosome:SGD1:IV:1199173:1200543:1 gene:YDR363W // ensembl // 11 // --- --- No cerevisiae_gene -1.1801276374785 -1.42669361766867 2.07245127770654 1.02939501278449 1.05284055955712 Max fold change below threshold 4 2.07245127770654 Max fold change at or above threshold 0.329207784858266 -1.48701839088804 0.507715978562565 0.650094627467206 236.022686004639 41.0936656634647 0.17410896536724 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773240_at YHL022C.S1 Meiosis-specific protein that initiates meiotic recombination by catalyzing the formation of double-strand breaks in DNA via a transesterification reaction; required for homologous chromosome pairing and synaptonemal complex formation 2.07240027076996 79.2593688964844 134.479030609131 SPO11 42138 // meiotic DNA double-strand break formation // traceable author statement 228 // nuclear chromosome // inferred from physical interaction 16889 // endodeoxyribonuclease activity, producing 3'-phosphomonoesters // inferred from mutant phenotype /// 16889 // endodeoxyribonuclease activity, producing 3'-phosphomonoesters // inferred from direct assay 127.495994567871 94.7398910522461 63.7788467407227 141.462066650391 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL022C /GEN=SPO11 /DB_XREF=GI:6321765 /SEG=NC_001140:-62958,64154 /DEF=Meiosis-specific protein that initiates meiotic recombination by catalyzing the formation of double-strand breaks in DNA via a transesterifcation reaction; required for homologous chromosome pairing and synaptonemal complex formation /NOTE=Spo11p; go_component: nuclear chromosome [goid GO:0000228] [evidence IPI] [pmid 9039264]; go_function: endodeoxyribonuclease activity, producing 3'-phosphomonoesters [goid GO:0016889] [evidence IMP] [pmid 11809802]; go_function: endodeoxyribonuclease activity, producing 3'-phosphomonoesters [goid GO:0016889] [evidence IDA] [pmid 12408862]; go_process: meiotic DNA double-strand break formation [goid GO:0042138] [evidence TAS] [pmid 9334324] --- --- --- --- --- --- S0001014 // SPO11 SGDID:S0001014, Chr VIII from 64154-62958, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016535 // cdna:Genscan chromosome:SGD1:VIII:62958:63800:-1 // ensembl // 11 // --- /// YHL022C // cdna:known chromosome:SGD1:VIII:62958:64154:-1 gene:YHL022C // ensembl // 11 // --- --- No cerevisiae_gene -2.07240027076996 -1.34574774312925 1.34555822143951 -1.99903261164591 1.10954126151065 Max fold change below threshold 4 2.07240027076996 Max fold change at or above threshold 0.593303204379411 -0.348883953298203 -1.23943854336689 0.995019292285683 106.869199752808 34.7660263130365 0.325313807845961 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777961_at SPCC320.09.S1 --- 2.07141225891621 --- --- --- --- 6.3077130317688 12.0175380706787 13.0658740997314 4.13407230377197 0.0561522990465164 0.0561522990465164 0.0107421996071935 0.0461426004767418 M M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC320.09 /DEF=ferrochelatase (predicted) --- --- --- --- --- --- SPCC320.09 // |hem15||ferrochelatase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.69620816062044 1.90521319060528 1.59578229382564 2.07141225891621 -1.52578681945489 Max fold change below threshold 4 2.07141225891621 Max fold change at or above threshold MAMPPP No 4 0 MMPP 0 2 2 No No 1 < x = 2
1770988_at YMR161W.S1 Co-chaperone for Hsp40p, anchored in the ER membrane; with its homolog Hdj1p promotes ER-associated protein degradation (ERAD) of integral membrane substrates; similar to E. coli DnaJ 2.07138706461701 654.400665283203 409.148727416992 HLJ1 6457 // protein folding // inferred from curator /// 30433 // ER-associated protein catabolism // inferred from mutant phenotype /// 30433 // ER-associated protein catabolism // inferred from genetic interaction 5783 // endoplasmic reticulum // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // inferred from sequence similarity 1671 // ATPase stimulator activity // inferred from direct assay /// 30188 // chaperone regulator activity // inferred from sequence similarity 374.921234130859 532.1943359375 776.606994628906 443.376220703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR161W /GEN=HLJ1 /DB_XREF=GI:6323813 /SEG=NC_001145:+577717,578391 /DEF=Tail-anchored ER membrane protein of unknown function, similar to the E. coli DnaJ protein /NOTE=Hlj1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 12514182]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 6.99999990182692E-28 /// scop // a.4.5.Lrp/AsnC-like transcriptional regulator N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Lrp/AsnC-like transcriptional regulator N-terminal domain // 1.39999997615814 S0004771 // span:206-223 // numtm:1 S0004771 // HLJ1 SGDID:S0004771, Chr XIII from 577717-578391, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021993 // cdna:GeneFinder chromosome:SGD1:XIII:575065:578391:1 // ensembl // 11 // --- /// GENSCAN00000018847 // cdna:Genscan chromosome:SGD1:XIII:577717:578391:1 // ensembl // 11 // --- /// YMR161W // cdna:known chromosome:SGD1:XIII:577717:578391:1 gene:YMR161W // ensembl // 11 // --- --- No cerevisiae_gene 1.31302725613184 1.41948304734254 1.65839178948638 2.07138706461701 1.18258498143205 Max fold change below threshold 4 2.07138706461701 Max fold change at or above threshold -0.893947470592866 0.0023916319245451 1.39536106292549 -0.503805224257166 531.774696350098 175.461609746726 0.329954792792942 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-Scv2-TrpnX-5_at AFFX-Scv2-TrpnX-5 --- 2.071014935912 --- --- --- --- 7.66609001159668 15.8765869140625 5.47483491897583 7.87457847595215 0.149657994508743 0.0239257998764515 0.303710997104645 0.129638999700546 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP B. subtilis /GEN=trpE, trpD /DB_XREF=gb:K01391.1 /NOTE=SIF corresponding to nucleotides 1953-2483 of gb:K01391.1, not 100% identical /DEF=B.subtilis tryptophan (trp) operon, complete cds. --- --- --- --- --- --- AFFX-Scv2-TrpnX-5 // --- // affx // --- // --- --- AFFX_control No -1.70414943556322 2.071014935912 -1.38574916380321 -1.40024130865132 1.02719619311019 Max fold change below threshold 4 2.071014935912 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1769406_at YDR144C.S1 GPI-anchored aspartyl protease (yapsin) involved in protein processing; shares functions with Yap3p and Kex2p 2.07089021650674 147.322006225586 304.945083618164 MKC7 6508 // proteolysis and peptidolysis // inferred from mutant phenotype 9277 // cell wall (sensu Fungi) // inferred from direct assay 9049 // aspartic-type signal peptidase activity // inferred from direct assay 287.220458984375 155.949813842773 138.694198608398 322.669708251953 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR144C /GEN=MKC7 /DB_XREF=GI:6320348 /SEG=NC_001136:-744305,746095 /DEF=protease involved in protein processing that shares functions with Yap3 and Kex2 /NOTE=Mkc7p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: aspartic-type signal peptidase activity [goid GO:0009049] [evidence IDA] [pmid 10446224]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence IMP] [pmid 7479877] --- --- --- --- --- --- S0002551 // MKC7 SGDID:S0002551, Chr IV from 746096-744306, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023491 // cdna:GeneFinder chromosome:SGD1:IV:744306:745982:-1 // ensembl // 11 // --- /// GENSCAN00000025203 // cdna:Genscan chromosome:SGD1:IV:744306:746096:-1 // ensembl // 11 // --- /// YDR144C // cdna:known chromosome:SGD1:IV:744306:746096:-1 gene:YDR144C // ensembl // 11 // --- --- No cerevisiae_gene 1.315453736012 -1.8417492904092 -1.11723763468469 -2.07089021650674 1.12342174158808 Max fold change below threshold 4 2.07089021650674 Max fold change at or above threshold 0.660998218886605 -0.759431409329961 -0.946147846242205 1.04458103668556 226.133544921875 92.4161553194435 0.408679549738503 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775990_at YPL087W.S1 Alkaline dihydroceramidase, involved in sphingolipid metabolism; preferentially hydrolyzes dihydroceramide to a free fatty acid and dihydrosphingosine; has a minor reverse activity 2.07024035899164 5549.70703125 3014.25854492188 YDC1 6672 // ceramide metabolism // inferred from mutant phenotype /// 9408 // response to heat // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay 17040 // ceramidase activity // inferred from direct assay 3225.28833007813 6677.1220703125 4422.2919921875 2803.22875976563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL087W /GEN=YDC1 /DB_XREF=GI:6325170 /SEG=NC_001148:+383450,384403 /DEF=Yeast dihydro-ceramidase /NOTE=Ydc1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 10900202]; go_function: ceramidase activity [goid GO:0017040] [evidence IDA] [pmid 10900202]; go_process: ceramide metabolism [goid GO:0006672] [evidence IMP] [pmid 10900202]; go_process: response to heat [goid GO:0009408] [evidence IMP] [pmid 10900202] --- --- --- --- --- S0006008 // span:43-60,67-89,99-121,134-156,160-182,203-225,240-262 // numtm:7 S0006008 // YDC1 SGDID:S0006008, Chr XVI from 383452-384405, Verified ORF // sgd // 11 // --- /// YPL087W // cdna:known chromosome:SGD1:XVI:383452:384405:1 gene:YPL087W // ensembl // 11 // --- --- No cerevisiae_gene -1.34464447350713 2.07024035899164 -1.05874806795911 1.37113074541165 -1.15056194355961 Max fold change below threshold 4 2.07024035899164 Max fold change at or above threshold -0.608069550443743 1.37827094251959 0.0807402310238346 -0.850941623099682 4281.98278808594 1737.78551686511 0.405836642244399 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779750_at SPCC1442.07c.S1 --- 2.06864664923308 --- --- --- --- 11.8582181930542 8.5219898223877 15.4872045516968 9.86633682250977 0.014160200022161 0.0952147990465164 0.00805663969367743 0.0107421996071935 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1442.07c /DEF=ubiquitin family protein --- --- --- --- --- --- SPCC1442.07c // |||ubiquitin family protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -2.06864664923308 -1.39148466968384 -1.21443310991352 1.30603133620599 -1.20188661773638 Max fold change below threshold 4 2.06864664923308 Max fold change at or above threshold PAAPPP No 4 0 PAPP 1 3 0 No No 2 < x = 3
1779664_at YJL112W.S1 Peripheral protein of the cytosolic face of the mitochondrial outer membrane, required for mitochondrial fission; interacts with Fis1p and with the dynamin-related GTPase Dnm1p; contains WD repeats 2.06834393546974 689.689056396484 1405.49334716797 MDV1 2 // mitochondrial genome maintenance // inferred from mutant phenotype /// 2 // mitochondrial genome maintenance // inferred from genetic interaction /// 266 // mitochondrial fission // inferred from mutant phenotype /// 266 // mitochondrial fission // inferred from genetic interaction /// 266 // mitochondrial fission // inferred from physical interaction 5741 // mitochondrial outer membrane // inferred from direct assay --- 1352.89538574219 654.095947265625 725.282165527344 1458.09130859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL112W /GEN=MDV1 /DB_XREF=GI:6322349 /SEG=NC_001142:+205222,207366 /DEF=WD repeat protein that regulates steps in the Dnm1p-dependent process of mitochondrial fission. /NOTE=Mdv1p; go_component: mitochondrial outer membrane [goid GO:0005741] [evidence IDA] [pmid 11038182]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitochondrial fission [goid GO:0000266] [evidence IGI,IMP,IPI] [pmid 11179417]; go_process: mitochondrial genome maintenance [goid GO:0000002] [evidence IGI,IMP] [pmid 11038182] --- --- --- --- --- --- S0003648 // MDV1 SGDID:S0003648, Chr X from 205222-207366, Verified ORF // sgd // 11 // --- /// GENSCAN00000024050 // cdna:Genscan chromosome:SGD1:X:205222:207366:1 // ensembl // 11 // --- /// YJL112W // cdna:known chromosome:SGD1:X:205222:207366:1 gene:YJL112W // ensembl // 11 // --- --- No cerevisiae_gene -1.91597498824441 -2.06834393546974 1.09986268058081 -1.86533662351743 1.07775613987615 Max fold change below threshold 4 2.06834393546974 Max fold change at or above threshold 0.733005037332921 -0.944743042778265 -0.773831999576303 0.985570005021647 1047.59120178223 416.510349056846 0.3975886284156 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779699_at YGR255C.S1 Putative flavin-dependent monooxygenase, involved in ubiquinone (Coenzyme Q) biosynthesis; located on the matrix side of the mitochondrial inner membrane 2.06751677447875 525.066879272461 1044.96264648438 COQ6 6743 // ubiquinone metabolism // inferred from mutant phenotype 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay /// 5743 // mitochondrial inner membrane // inferred from direct assay 15997 // ubiquinone biosynthesis monooxygenase activity // inferred from sequence similarity 965.279907226563 466.878875732422 583.2548828125 1124.64538574219 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR255C /GEN=COQ6 /DB_XREF=GI:6321694 /SEG=NC_001139:-1002527,1003966 /DEF=Putative flavin-dependent monooxygenase, involved in ubiquinone (Coenzyme Q) biosynthesis; located on the matrix side of the mitochondrial inner membrane /NOTE=Coq6p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 12721307]; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 10760477]; go_function: ubiquinone biosynthesis monooxygenase activity [goid GO:0015997] [evidence ISS] [pmid 11583838]; go_process: ubiquinone metabolism [goid GO:0006743] [evidence IMP] [pmid 9266513] --- --- --- --- --- --- S0003487 // COQ6 SGDID:S0003487, Chr VII from 1003967-1002528, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019537 // cdna:Genscan chromosome:SGD1:VII:1002528:1003967:-1 // ensembl // 11 // --- /// GENEFINDER00000021569 // cdna:GeneFinder chromosome:SGD1:VII:1002528:1003205:-1 // ensembl // 11 // --- /// YGR255C // cdna:known chromosome:SGD1:VII:1002528:1003967:-1 gene:YGR255C // ensembl // 11 // --- --- No cerevisiae_gene -1.31774841161331 -2.06751677447875 1.04035264676026 -1.65498812898386 1.16509768547189 Max fold change below threshold 4 2.06751677447875 Max fold change at or above threshold 0.580031650255191 -1.02365259958582 -0.649194366515527 1.09281531584616 785.014762878418 310.785013660608 0.395897030676278 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771173_at YGL070C.S1 RNA polymerase II subunit B12.6; contacts DNA; mutations affect transcription start site 2.06741095736507 398.536285400391 474.737319946289 RPB9 6366 // transcription from RNA polymerase II promoter // traceable author statement 5665 // DNA-directed RNA polymerase II, core complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 431.619537353516 324.057556152344 473.015014648438 517.855102539063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL070C /GEN=RPB9 /DB_XREF=GI:6321368 /SEG=NC_001139:-374460,374828 /DEF=RNA polymerase II core subunit /NOTE=Rpb9p; go_component: DNA-directed RNA polymerase II, core complex [goid GO:0005665] [evidence TAS] [pmid 9774381]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 9774381]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence TAS] --- --- --- --- --- --- S0003038 // RPB9 SGDID:S0003038, Chr VII from 374830-374462, reverse complement, Verified ORF // sgd // 11 // --- /// YGL070C // cdna:known chromosome:SGD1:VII:374462:374830:-1 gene:YGL070C // ensembl // 11 // --- --- No cerevisiae_gene 2.06741095736507 -1.3319224599429 1.16496019425157 1.09590732974865 1.19979532371102 Max fold change below threshold 4 2.06741095736507 Max fold change at or above threshold -0.0605192320977547 -1.35795281199783 0.438801082558534 0.979670961537054 436.63680267334 82.9036513834148 0.189868675466271 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774218_at YKR082W.S1 Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), localizes to both sides of the NPC, required to establish a normal nucleocytoplasmic concentration gradient of the GTPase Gsp1p 2.06585006786132 479.70458984375 1028.35821533203 NUP133 6259 // DNA metabolism // inferred from genetic interaction /// 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6999 // nuclear pore organization and biogenesis // inferred from mutant phenotype 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement 980.630493164063 474.686187744141 484.722991943359 1076.0859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR082W /GEN=NUP133 /DB_XREF=GI:6322935 /SEG=NC_001143:+592467,595940 /DEF=Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), localizes to both sides of the NPC, required to establish a normal nucleocytoplasmic concentration gradient of the GTPase Gsp1p /NOTE=Nup133p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence IMP] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0001790 // NUP133 SGDID:S0001790, Chr XI from 592467-595940, Verified ORF // sgd // 11 // --- /// GENSCAN00000018484 // cdna:Genscan chromosome:SGD1:XI:592467:595940:1 // ensembl // 11 // --- /// GENEFINDER00000022965 // cdna:GeneFinder chromosome:SGD1:XI:592467:595940:1 // ensembl // 11 // --- /// YKR082W // cdna:known chromosome:SGD1:XI:592467:595940:1 gene:YKR082W // ensembl // 11 // --- --- No cerevisiae_gene -1.11811355582332 -2.06585006786132 -1.06895975182721 -2.02307402261342 1.09734088935777 Max fold change below threshold 4 2.06585006786132 Max fold change at or above threshold 0.709942052759851 -0.875197313239649 -0.843751691113699 1.0090069515935 754.031402587891 319.179698815253 0.423297620921099 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771302_at YOR246C.S1 Protein with similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, which is a model system for studying replication of positive-strand RNA viruses in their natural hosts 2.06538501684889 946.707275390625 849.226470947266 --- --- 5811 // lipid particle // inferred from direct assay 16491 // oxidoreductase activity // inferred from sequence similarity 806.350891113281 871.153381347656 1022.26116943359 892.10205078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR246C /GEN=DGA1 /DB_XREF=GI:6324820 /SEG=NC_001147:-795801,796793 /DEF=Hypothetical ORF /NOTE=Yor246cp; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 14562095]; go_function: oxidoreductase activity [goid GO:0016491] [evidence ISS] [pmid 8972580]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005772 // span:241-263 // numtm:1 S0005772 // YOR246C SGDID:S0005772, Chr XV from 796793-795801, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017671 // cdna:Genscan chromosome:SGD1:XV:795801:796793:-1 // ensembl // 11 // --- /// YOR246C // cdna:known chromosome:SGD1:XV:795801:796793:-1 gene:YOR246C // ensembl // 11 // --- --- No cerevisiae_gene 2.06538501684889 1.08036512509449 1.0635333378295 1.2677621872808 1.10634471991415 Max fold change below threshold 4 2.06538501684889 Max fold change at or above threshold -1.01181318646822 -0.296130041847438 1.37271472882262 -0.0647715005069605 897.966873168945 90.5463412425511 0.100834834722812 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772367_at YMR091C.S1 Nuclear protein that may have a role in nuclear protein import 2.0649289415548 323.307876586914 682.873657226563 NPL6 6606 // protein-nucleus import // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 16586 // RSC complex // inferred from physical interaction --- 665.316223144531 324.417633056641 322.198120117188 700.431091308594 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR091C /GEN=NPL6 /DB_XREF=GI:6323738 /SEG=NC_001145:-450057,451364 /DEF=Nuclear protein that may have a role in nuclear protein import /NOTE=Npl6p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-nucleus import [goid GO:0006606] [evidence IMP] [pmid 2556404] --- --- --- --- --- --- S0004697 // NPL6 SGDID:S0004697, Chr XIII from 451364-450057, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018787 // cdna:Genscan chromosome:SGD1:XIII:450057:451364:-1 // ensembl // 11 // --- /// GENEFINDER00000021910 // cdna:GeneFinder chromosome:SGD1:XIII:450057:451364:-1 // ensembl // 11 // --- /// YMR091C // cdna:known chromosome:SGD1:XIII:450057:451364:-1 gene:YMR091C // ensembl // 11 // --- --- No cerevisiae_gene -1.12543403203487 -2.0508016684419 -1.15919276121112 -2.0649289415548 1.05277921527014 Max fold change below threshold 4 2.0649289415548 Max fold change at or above threshold 0.779586163726001 -0.858626668153267 -0.86929269812129 0.948333202548557 503.090766906738 208.091759174435 0.413626671095339 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773218_at YJL099W.S1 Protein of unknown function, involved in chitin biosynthesis by regulating Chs3p localization 2.06479808247881 224.943458557129 347.205352783203 CHS6 6038 // cell wall chitin biosynthesis // inferred from mutant phenotype /// 6893 // Golgi to plasma membrane transport // inferred from mutant phenotype 30136 // clathrin-coated vesicle // inferred from direct assay --- 348.818328857422 168.935806274414 280.951110839844 345.592376708984 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL099W /GEN=CHS6 /DB_XREF=GI:6322362 /SEG=NC_001142:+239331,241571 /DEF=Involved in chitin biosynthesis and/or its regulation /NOTE=Chs6p; go_component: clathrin-coated vesicle [goid GO:0030136] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi to plasma membrane transport [goid GO:0006893] [evidence IMP] [pmid 11879634]; go_process: cell wall chitin biosynthesis [goid GO:0006038] [evidence IMP] [pmid 9614194] --- --- --- --- --- --- S0003635 // CHS6 SGDID:S0003635, Chr X from 239331-241571, Verified ORF // sgd // 11 // --- /// GENSCAN00000024063 // cdna:Genscan chromosome:SGD1:X:239331:241571:1 // ensembl // 11 // --- /// GENEFINDER00000024334 // cdna:GeneFinder chromosome:SGD1:X:239652:241571:1 // ensembl // 11 // --- /// YJL099W // cdna:known chromosome:SGD1:X:239331:241571:1 gene:YJL099W // ensembl // 11 // --- --- No cerevisiae_gene -1.62594180036318 -2.06479808247881 1.06842638620433 -1.24156237650993 -1.00933455818429 Max fold change below threshold 4 2.06479808247881 Max fold change at or above threshold 0.745914637196669 -1.39257144646886 -0.0609069438199811 0.707563753092177 286.074405670166 84.1167608978194 0.29403805174659 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776254_at YMR268C.S1 Splicing factor that reanneals U4 and U6 snRNPs during spliceosome recycling 2.06465700201505 162.164352416992 298.900680541992 PRP24 244 // assembly of spliceosomal tri-snRNP // inferred from direct assay /// 245 // spliceosome assembly // inferred from mutant phenotype 5681 // spliceosome complex // traceable author statement 31202 // RNA splicing factor activity, transesterification mechanism // traceable author statement 275.432067871094 133.403305053711 190.925399780273 322.369293212891 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR268C /GEN=PRP24 /DB_XREF=GI:6323924 /SEG=NC_001145:-802887,804221 /DEF=Splicing factor that reanneals U4 and U6 snRNPs during spliceosome recycling /NOTE=Prp24p; go_component: spliceosome complex [goid GO:0005681] [evidence TAS] [pmid 9476892]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence TAS] [pmid 9476892]; go_process: assembly of spliceosomal tri-snRNP [goid GO:0000244] [evidence IDA] [pmid 9452384]; go_process: spliceosome assembly [goid GO:0000245] [evidence IMP] [pmid 10022888] --- --- --- --- --- --- S0004881 // PRP24 SGDID:S0004881, Chr XIII from 804221-802887, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018939 // cdna:Genscan chromosome:SGD1:XIII:802887:804221:-1 // ensembl // 11 // --- /// YMR268C // cdna:known chromosome:SGD1:XIII:802887:804221:-1 gene:YMR268C // ensembl // 11 // --- --- No cerevisiae_gene -1.23139749407929 -2.06465700201505 1.20214788155772 -1.44261616415665 1.17041307391906 Max fold change below threshold 4 2.06465700201505 Max fold change at or above threshold 0.530958935555793 -1.14859995504661 -0.468373332722983 1.0860143522138 230.532516479492 84.5631335775561 0.366816511913098 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772361_at YHR126C.S1 Hypothetical protein 2.06464216463166 7.82826781272888 7.40865206718445 --- --- --- --- 6.23767709732056 6.87091207504272 8.78562355041504 8.57962703704834 0.149657994508743 0.432372987270355 0.111571997404099 0.014160200022161 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR126C /GEN=NDT80 /DB_XREF=GI:6321918 /SEG=NC_001140:-359704,360183 /DEF=Hypothetical ORF /NOTE=Yhr126cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001168 // YHR126C SGDID:S0001168, Chr VIII from 360183-359704, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000016661 // cdna:Genscan chromosome:SGD1:VIII:359704:360183:-1 // ensembl // 10 // --- /// GENEFINDER00000020157 // cdna:GeneFinder chromosome:SGD1:VIII:359704:360183:-1 // ensembl // 10 // --- /// YHR126C // cdna:known chromosome:SGD1:VIII:359704:360183:-1 gene:YHR126C // ensembl // 10 // --- --- No cerevisiae_gene -1.69686652526282 1.10151775538272 -2.06464216463166 1.40847681169469 1.3754522562147 Max fold change below threshold 4 2.06464216463166 Max fold change at or above threshold -1.09716146116802 -0.593996885271383 0.927420947545867 0.76373739889354 7.61845993995667 1.25850468823991 0.165191482026362 APAAAP No 4 0 AAAP 3 1 0 No No x = 1
1773853_at YKL008C.S1 Ceramide synthase component, involved in synthesis of ceramide from C26(acyl)-coenzyme A and dihydrosphingosine or phytosphingosine, functionally equivalent to Lag1p 2.0646015802189 1973.15222167969 1447.79949951172 LAC1 7568 // aging // traceable author statement /// 46513 // ceramide biosynthesis // inferred from mutant phenotype /// 46513 // ceramide biosynthesis // inferred from direct assay 5783 // endoplasmic reticulum // traceable author statement 50291 // sphingosine N-acyltransferase activity // inferred from mutant phenotype /// 50291 // sphingosine N-acyltransferase activity // inferred from direct assay 1434.52917480469 1907.46411132813 2038.84033203125 1461.06982421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL008C /GEN=LAC1 /DB_XREF=GI:6322844 /SEG=NC_001143:-426938,428194 /DEF=Ceramide synthase component, involved in synthesis of ceramide from C26(acyl)-coenzyme A and dihydrosphingosine or phytosphingosine, functionally equivalent to Lag1p /NOTE=Lac1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS] [pmid 11074293]; go_function: sphingosine N-acyltransferase activity [goid GO:0050291] [evidence IMP] [pmid 11694577]; go_process: aging [goid GO:0007568] [evidence TAS] [pmid 11074293]; go_process: ceramide biosynthesis [goid GO:0046513] [evidence IMP] [pmid 11694577] --- --- --- --- --- S0001491 // span:78-100,136-158,178-200,220-242,258-280,295-317,351-373 // numtm:7 S0001491 // LAC1 SGDID:S0001491, Chr XI from 428194-426938, reverse complement, Verified ORF // sgd // 11 // --- /// YKL008C // cdna:known chromosome:SGD1:XI:426938:428194:-1 gene:YKL008C // ensembl // 11 // --- GENEFINDER00000023117 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 2.0646015802189 1.32967955258758 1.00160292207154 1.42126097387238 1.01850129636971 Max fold change below threshold 4 2.0646015802189 Max fold change at or above threshold -0.895324547918802 0.639139462852224 1.06539700267782 -0.809211917611247 1710.4758605957 308.208555693529 0.180188778335749 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Sc-25SrRNA-3_at AFFX-r2-Sc-25SrRNA-3 Identified by fungal homology and RT-PCR 2.06449101966997 1884.60638427734 2418.95678710938 --- --- --- --- 2759.47607421875 2047.95031738281 1721.26245117188 2078.4375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=Z73326 SGD:YLR154C 25S ribosomal RNA corresponds to complement of 4212-7605 in Z73326 (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- L10643 // Saccharomyces cerevisiae 25S ribosomal RNA, partial. // gb // 0 // chr12:463694-463982(-) /// M19229 // Yeast (S.cerevisiae) 28S large subunit rRNA, 5' end. // gb // 0 // chr12:463950-464317(-) /// D83572 // Saccharomyces cerevisiae 26S ribosomal RNA, partial sequence. // gb // 0 // chr12:463696-463826(-) /// L11088 // Saccharomyces cerevisiae 25S ribosomal RNA sequence. // gb // 0 // chr12:463700-463969(-) /// D23716 // Saccharomyces cerevisiae 26S ribosomal RNA, partial sequence. // gb // 0 // chr12:463696-463826(-) /// L20827 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:463694-464013(-) /// L20827 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:454557-454876(-) /// L10643 // Saccharomyces cerevisiae 25S ribosomal RNA, partial. // gb // 0 // chr12:454557-454845(-) /// M19229 // Yeast (S.cerevisiae) 28S large subunit rRNA, 5' end. // gb // 0 // chr12:454813-455180(-) /// D83572 // Saccharomyces cerevisiae 26S ribosomal RNA, partial sequence. // gb // 0 // chr12:454559-454689(-) /// L11088 // Saccharomyces cerevisiae 25S ribosomal RNA sequence. // gb // 0 // chr12:454563-454832(-) /// D23716 // Saccharomyces cerevisiae 26S ribosomal RNA, partial sequence. // gb // 0 // chr12:454559-454689(-) S0004152 // sgd // 1 // Negative Strand Matching Probes /// YLR162W // ensembl // 1 // Negative Strand Matching Probes AFFX_control cerevisiae_gene 2.06449101966997 -1.34743311436639 1.74721321610707 -1.60316985497478 -1.32766853668621 Max fold change below threshold 4 2.06449101966997 Max fold change at or above threshold 1.39316993412806 -0.238038362966975 -0.986986595415049 -0.168144975746034 2151.78158569336 436.195523344916 0.202713661202916 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 No No 3 < x
1771857_at YDR129C.S1 Fimbrin, actin-bundling protein; cooperates with Scp1p (calponin/transgelin) in the organization and maintenance of the actin cytoskeleton 2.06419748914489 5562.10717773438 2974.39709472656 SAC6 6897 // endocytosis // inferred from mutant phenotype /// 6970 // response to osmotic stress // inferred from mutant phenotype /// 7015 // actin filament organization // inferred from mutant phenotype /// 7015 // actin filament organization // inferred from physical interaction /// 7121 // bipolar bud site selection // inferred from mutant phenotype 30479 // actin cortical patch // inferred from direct assay /// 30482 // actin cable // inferred from direct assay 30674 // protein binding, bridging // inferred from direct assay /// 51015 // actin filament binding // inferred from direct assay 3149.95556640625 6502.13037109375 4622.083984375 2798.83862304688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR129C /GEN=SAC6 /DB_XREF=GI:6320334 /SEG=NC_001136:-713334,715373 /DEF=fimbrin homolog (actin-filament bundling protein) /NOTE=Sac6p; go_component: actin cable (sensu Fungi) [goid GO:0030482] [evidence IDA] [pmid 10652251]; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10652251]; go_function: actin filament binding [goid GO:0051015] [evidence IDA] [pmid 2643162]; go_function: protein binding, bridging [goid GO:0030674] [evidence IDA] [pmid 12857851]; go_process: actin filament organization [goid GO:0007015] [evidence IMP,IPI] [pmid 8522605]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 10652251]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251]; go_process: response to osmotic stress [goid GO:0006970] [evidence IMP] [pmid 10652251] --- --- --- --- scop // a.4.5.Restriction endonuclease FokI, N-terminal (recognition) do // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Restriction endonuclease FokI, N-terminal (recognition) domain // 1.20000004768372 --- S0002536 // SAC6 SGDID:S0002536, Chr IV from 715374-715354,715242-713335, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023724 // cdna:GeneFinder chromosome:SGD1:IV:713335:716179:-1 // ensembl // 11 // --- /// GENSCAN00000025193 // cdna:Genscan chromosome:SGD1:IV:713335:714228:-1 // ensembl // 11 // --- /// YDR129C // cdna:known chromosome:SGD1:IV:713335:715374:-1 gene:YDR129C // ensembl // 11 // --- --- No cerevisiae_gene -1.2145902375782 2.06419748914489 -1.00363838046835 1.46734894728953 -1.12545094256887 Max fold change below threshold 4 2.06419748914489 Max fold change at or above threshold -0.66338559857206 1.32516068631491 0.209896872358389 -0.871671960101242 4268.25213623047 1685.74140323721 0.39494888057995 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771292_at YDR224C.S1 One of two nearly identical (see HTB2) histone H2B subtypes required for chromatin assembly and chromosome function; Rad6p-Bre1p-Lge1p mediated ubiquitination regulates transcriptional activation, meiotic DSB formation and H3 methylation 2.06383312382259 4973.62048339844 2886.09020996094 HTB1 6301 // postreplication repair // inferred from genetic interaction /// 6333 // chromatin assembly or disassembly // inferred from direct assay /// 6333 // chromatin assembly or disassembly // traceable author statement 788 // nuclear nucleosome // inferred from direct assay /// 788 // nuclear nucleosome // traceable author statement 3677 // DNA binding // inferred from direct assay /// 3677 // DNA binding // traceable author statement 3018.68188476563 6230.0556640625 3717.18530273438 2753.49853515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR224C /GEN=HTB1 /DB_XREF=GI:6320430 /SEG=NC_001136:-914309,914704 /DEF=Histone H2B (HTB1 and HTB2 code for nearly identical proteins) /NOTE=Htb1p; go_component: nuclear nucleosome [goid GO:0000788] [evidence TAS] [pmid 2275823]; go_component: nuclear nucleosome [goid GO:0000788] [evidence IDA] [pmid 9256430]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 2275823]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 8017102]; go_process: chromatin assembly/disassembly [goid GO:0006333] [evidence TAS] [pmid 2275823]; go_process: chromatin assembly/disassembly [goid GO:0006333] [evidence IDA] [pmid 9256430] --- --- --- --- --- --- S0002632 // HTB1 SGDID:S0002632, Chr IV from 914706-914311, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023906 // cdna:GeneFinder chromosome:SGD1:IV:914311:914706:-1 // ensembl // 11 // --- /// GENSCAN00000025272 // cdna:Genscan chromosome:SGD1:IV:914311:914706:-1 // ensembl // 11 // --- /// YDR224C // cdna:known chromosome:SGD1:IV:914311:914706:-1 gene:YDR224C // ensembl // 11 // --- M37743 // gb // 2 // Cross Hyb Matching Probes No cerevisiae_gene 1.17310682718724 2.06383312382259 -1.07999599604251 1.23139351698299 -1.09630778670246 Max fold change below threshold 4 2.06383312382259 Max fold change at or above threshold -0.574357624455364 1.44992983804446 -0.134056429800595 -0.741515783788501 3929.85534667969 1586.42180954433 0.403684530242237 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776711_at YGR229C.S1 Protein involved in the regulation of cell wall synthesis; proposed to be involved in coordinating cell cycle progression with cell wall integrity 2.06370086807088 632.276580810547 852.903045654297 SMI1 6075 // beta-1,3 glucan biosynthesis // traceable author statement /// 7047 // cell wall organization and biogenesis // traceable author statement 5634 // nucleus // inferred from direct assay /// 5934 // bud tip // traceable author statement --- 761.196716308594 578.857788085938 685.695373535156 944.609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR229C /GEN=SMI1 /DB_XREF=GI:6321668 /SEG=NC_001139:-949382,950899 /DEF=Protein involved in (1,3)-beta-glucan synthesis, possibly through regulation of cell wall glucan and chitin synthesis; chromatin binding protein /NOTE=Smi1p; go_component: bud tip [goid GO:0005934] [evidence TAS] [pmid 10206705]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10206705]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: beta-1,3 glucan biosynthesis [goid GO:0006075] [evidence TAS] [pmid 8289782]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence TAS] [pmid 8289782] --- --- --- --- --- --- S0003461 // SMI1 SGDID:S0003461, Chr VII from 950901-949384, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019517 // cdna:Genscan chromosome:SGD1:VII:949384:950901:-1 // ensembl // 11 // --- /// GENEFINDER00000021614 // cdna:GeneFinder chromosome:SGD1:VII:949384:950802:-1 // ensembl // 11 // --- /// YGR229C // cdna:known chromosome:SGD1:VII:949384:950901:-1 gene:YGR229C // ensembl // 11 // --- YGR228W // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene 2.06370086807088 -1.31499779734429 -1.06796111599692 -1.11010916171737 1.24095303455966 Max fold change below threshold 4 2.06370086807088 Max fold change at or above threshold 0.120777140344578 -1.06278222115012 -0.36930099006871 1.31130607087425 742.589813232422 154.059808197861 0.207462862340184 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773046_at YNL196C.S1 Sporulation-specific protein with a leucine zipper motif 2.06332976056973 187.370040893555 367.745971679688 --- --- --- --- 342.794647216797 208.603454589844 166.136627197266 392.697296142578 0.000732421991415322 0.018554700538516 0.014160200022161 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL196C /GEN=WHI3 /DB_XREF=GI:6324133 /SEG=NC_001146:-270274,271170 /DEF=Sporulation-specific protein with a leucine zipper motif /NOTE=Ynl196cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005140 // YNL196C SGDID:S0005140, Chr XIV from 271170-270274, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019882 // cdna:Genscan chromosome:SGD1:XIV:270274:270744:-1 // ensembl // 10 // --- /// GENEFINDER00000020419 // cdna:GeneFinder chromosome:SGD1:XIV:270274:271167:-1 // ensembl // 11 // --- /// YNL196C // cdna:known chromosome:SGD1:XIV:270274:271170:-1 gene:YNL196C // ensembl // 11 // --- --- No cerevisiae_gene -1.57771079226745 -1.64328365458185 1.24841447221704 -2.06332976056973 1.14557592812767 Max fold change below threshold 4 2.06332976056973 Max fold change at or above threshold 0.606733660492356 -0.641312105621352 -1.03627501704676 1.07085346217575 277.558006286621 107.521051126844 0.387382272143186 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1775279_at YLR203C.S1 Nuclear encoded protein required for translation of COX1 mRNA; binds to Cox1 protein 2.06315887653276 891.865478515625 1503.59307861328 MSS51 6412 // protein biosynthesis // traceable author statement /// 45946 // positive regulation of translation // inferred from genetic interaction /// 45946 // positive regulation of translation // inferred from mutant phenotype /// 45946 // positive regulation of translation // inferred from physical interaction 5739 // mitochondrion // inferred from direct assay /// 5743 // mitochondrial inner membrane // inferred from direct assay /// 5759 // mitochondrial matrix // inferred from direct assay /// 19898 // extrinsic to membrane // inferred from direct assay --- 1441.91333007813 698.88623046875 1084.8447265625 1565.27282714844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR203C /GEN=MSS51 /DB_XREF=GI:6323232 /SEG=NC_001144:-550652,551962 /DEF=Protein required for the maturation and translation of COX1 mRNA /NOTE=Mss51p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 8811190]; go_process: mRNA processing [goid GO:0006397] [evidence IMP] [pmid 6320175]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 8811190] --- --- --- --- --- --- S0004193 // MSS51 SGDID:S0004193, Chr XII from 551962-550652, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017977 // cdna:Genscan chromosome:SGD1:XII:550652:551854:-1 // ensembl // 10 // --- /// GENEFINDER00000024820 // cdna:GeneFinder chromosome:SGD1:XII:550652:551962:-1 // ensembl // 10 // --- /// YLR203C // cdna:known chromosome:SGD1:XII:550652:551962:-1 gene:YLR203C // ensembl // 10 // --- S0005776 // sgd // 1 // Negative Strand Matching Probes /// GENSCAN00000017675 // ensembl // 1 // Negative Strand Matching Probes /// YOR250C // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene 1.02382503648361 -2.06315887653276 1.05076686267382 -1.32914259043048 1.08555264348907 Max fold change below threshold 4 2.06315887653276 Max fold change at or above threshold 0.626111978487797 -1.27908274869703 -0.289447118911016 0.942417889120247 1197.72927856445 390.000606765952 0.325616659578858 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778517_at SPBC1734.02c.S1 --- 2.06248144724808 --- --- --- --- 0.316709667444229 0.203643545508385 0.360106408596039 0.644403159618378 0.780517995357513 0.84521484375 0.567627012729645 0.357177734375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1734.02c /GEN=cdc27 /DEF=DNA polymerase delta (subunit) --- --- --- --- --- --- M83307 // Schizosaccharomyces pombe cdc27+ mRNA, complete cds. // gb // 11 // --- /// SPBC1734.02c // |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc27|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.20386452841919 -1.55521583880099 -2.06248144724808 1.13702373376225 2.03468105289793 Max fold change below threshold 0 2.06248144724808 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778243_at YLR414C.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, and bud 2.06243267460045 4210.11328125 2334.96313476563 --- --- 5737 // cytoplasm // inferred from direct assay /// 5933 // bud // inferred from direct assay --- 2317.64501953125 4779.98681640625 3640.23974609375 2352.28125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR414C /GEN=CTR3 /DB_XREF=GI:6323446 /SEG=NC_001144:-953349,954140 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, and bud /NOTE=Ylr414cp; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 14562095]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004406 // span:5-27,139-161,176-198,219-241 // numtm:4 S0004406 // YLR414C SGDID:S0004406, Chr XII from 954140-953349, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YLR414C // cdna:known chromosome:SGD1:XII:953349:954140:-1 gene:YLR414C // ensembl // 11 // --- --- No cerevisiae_gene -1.20671059586099 2.06243267460045 1.3920314958042 1.57066320140347 1.01494457959561 Max fold change below threshold 4 2.06243267460045 Max fold change at or above threshold -0.810289431243456 1.2791689062906 0.312018845414888 -0.780898320462033 3272.53820800781 1178.45938951863 0.360105616684619 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775810_at YNL194C.S1 Hypothetical protein 2.06207162879952 7404.23046875 4197.0263671875 --- --- 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 5938 // cell cortex // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity --- 4464.60009765625 9206.3251953125 5602.1357421875 3929.45263671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL194C /GEN=WHI3 /DB_XREF=GI:6324135 /SEG=NC_001146:-272709,273614 /DEF=Hypothetical ORF /NOTE=Ynl194cp; go_component: cell cortex [goid GO:0005938] [evidence IDA] [pmid 11784867]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11914276]; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 11784867]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005138 // span:7-29,113-135,148-170,190-212 // numtm:4 S0005138 // YNL194C SGDID:S0005138, Chr XIV from 273614-272709, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020630 // cdna:GeneFinder chromosome:SGD1:XIV:272709:273380:-1 // ensembl // 11 // --- /// YNL194C // cdna:known chromosome:SGD1:XIV:272709:273614:-1 gene:YNL194C // ensembl // 11 // --- GENSCAN00000019884 // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene -1.11675072779322 2.06207162879952 1.15945019309343 1.25479004158254 -1.13618880551882 Max fold change below threshold 4 2.06207162879952 Max fold change at or above threshold -0.562495604542158 1.43386890721835 -0.083569529150886 -0.787803773525305 5800.62841796875 2375.1800183398 0.409469431102008 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773166_at YDR307W.S1 Hypothetical protein 2.06169637387869 268.634155273438 522.086761474609 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 506.479736328125 291.606658935547 245.661651611328 537.693786621094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR307W /GEN=HNT2 /DB_XREF=GI:6320513 /SEG=NC_001136:+1075857,1077845 /DEF=Hypothetical ORF /NOTE=Ydr307wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002715 // span:30-47,106-123,162-184,194-216,236-258 // numtm:5 S0002715 // YDR307W SGDID:S0002715, Chr IV from 1075859-1077847, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023635 // cdna:GeneFinder chromosome:SGD1:IV:1075859:1077847:1 // ensembl // 11 // --- /// GENSCAN00000025336 // cdna:Genscan chromosome:SGD1:IV:1076678:1077847:1 // ensembl // 11 // --- /// YDR307W // cdna:known chromosome:SGD1:IV:1075859:1077847:1 gene:YDR307W // ensembl // 11 // --- --- No cerevisiae_gene 1.14867192309046 -1.73685929593285 -1.1967042683195 -2.06169637387869 1.06162941585633 Max fold change below threshold 4 2.06169637387869 Max fold change at or above threshold 0.750412888754821 -0.700672194685024 -1.0109489198836 0.961208225813798 395.360458374023 148.077517882835 0.374538006384919 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778765_at YOR112W.S1 Hypothetical protein 2.06168922791335 148.276786804199 306.991958618164 --- --- 5737 // cytoplasm // inferred from direct assay --- 266.879089355469 129.446807861328 167.10676574707 347.104827880859 0.00195312988944352 0.00805663969367743 0.00585938012227416 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR112W /GEN=TFC7 /DB_XREF=GI:6324686 /SEG=NC_001147:+531508,533793 /DEF=Hypothetical ORF /NOTE=Yor112wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- hanks // 1.9.2 // AGC group; AGC Other; Sgk // 4.5 --- --- S0005638 // YOR112W SGDID:S0005638, Chr XV from 531508-533793, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017544 // cdna:Genscan chromosome:SGD1:XV:531508:533793:1 // ensembl // 11 // --- /// GENEFINDER00000022778 // cdna:GeneFinder chromosome:SGD1:XV:532417:533793:1 // ensembl // 11 // --- /// YOR112W // cdna:known chromosome:SGD1:XV:531508:533793:1 gene:YOR112W // ensembl // 11 // --- --- No cerevisiae_gene -1.14422593751102 -2.06168922791335 1.41715846622117 -1.59705735529232 1.30060706037008 Max fold change below threshold 4 2.06168922791335 Max fold change at or above threshold 0.398348415093714 -0.996640164187403 -0.614377637685884 1.21266938677957 227.634372711182 98.518571073151 0.432793035163233 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1779306_at YHR159W.S1 Protein of unknown function that localizes to the cytoplasm, potential Cdc28p substrate 2.06163617784594 84.2238922119141 167.974235534668 --- --- 5737 // cytoplasm // inferred from direct assay --- 166.795791625977 80.9045715332031 87.543212890625 169.152679443359 0.000244141003349796 0.014160200022161 0.00585938012227416 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR159W /GEN=KEL1 /DB_XREF=GI:6321953 /SEG=NC_001140:+417550,419064 /DEF=Protein of unknown function that localizes to the cytoplasm, potential Cdc28p substrate /NOTE=Yhr159wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001202 // YHR159W SGDID:S0001202, Chr VIII from 417551-419065, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016686 // cdna:Genscan chromosome:SGD1:VIII:417551:419065:1 // ensembl // 11 // --- /// GENEFINDER00000020181 // cdna:GeneFinder chromosome:SGD1:VIII:417551:419065:1 // ensembl // 11 // --- /// YHR159W // cdna:known chromosome:SGD1:VIII:417551:419065:1 gene:YHR159W // ensembl // 11 // --- --- No cerevisiae_gene -1.77389650650696 -2.06163617784594 1.98803398990168 -1.90529666570918 1.01413037939631 Max fold change below threshold 4 2.06163617784594 Max fold change at or above threshold 0.840169080806994 -0.933023787997419 -0.795971461801381 0.888826168991806 126.099063873291 48.4387353478847 0.384132394484369 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1775594_s_at YHR141C.S1 Protein component of the large (60S) ribosomal subunit, identical to Rpl42Bp and has similarity to rat L44 ribosomal protein /// Protein component of the large (60S) ribosomal subunit, identical to Rpl42Ap and has similarity to rat L44; required for propagation of the killer toxin-encoding M1 double-stranded RNA satellite of the L-A double-stranded RNA virus 2.06093623571841 2589.63269042969 3934.95068359375 RPL42A /// RPL42B 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 4591.689453125 2951.30249023438 2227.962890625 3278.2119140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR141C /GEN=RPL42B /DB_XREF=GI:6321934 /SEG=NC_001140:-381991,382752 /DEF=Protein component of the large (60S) ribosomal subunit, identical to Rpl42Ap and has similarity to rat L44; required for propagation of the killer toxin-encoding M1 double-stranded RNA satellite of the L-A double-stranded RNA virus /NOTE=Rpl42bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0001183 // RPL42B SGDID:S0001183, Chr VIII from 382753-382750,382308-381992, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0005106 // RPL42A SGDID:S0005106, Chr XIV from 331322-331325,331838-332154, intron sequence removed, Verified ORF // sgd // 11 // --- /// YHR141C // cdna:known chromosome:SGD1:VIII:381992:382753:-1 gene:YHR141C // ensembl // 11 // --- /// YNL162W // cdna:known chromosome:SGD1:XIV:331322:332154:1 gene:YNL162W // ensembl // 11 // --- --- No cerevisiae_gene -1.32547837935475 -1.55581797132572 -1.60680258625403 -2.06093623571841 -1.4006688931329 Max fold change below threshold 4 2.06093623571841 Max fold change at or above threshold 1.34424352272855 -0.314462100104714 -1.04587943530212 0.0160980126782889 3262.29168701172 988.95605121821 0.30314764775804 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777896_at YGL106W.S1 Essential light chain for myosin Myo2p; may stabilize Myo2p by binding to the neck region; may interact with Myo1p, Iqg1p, and Myo2p to coordinate formation and contraction of the actomyosin ring with targeted membrane deposition 2.06038125209503 873.668853759766 1581.36437988281 MLC1 1 // mitochondrion inheritance // traceable author statement /// 11 // vacuole inheritance // traceable author statement /// 910 // cytokinesis // inferred from mutant phenotype /// 6897 // endocytosis // inferred from physical interaction /// 7118 // budding cell apical bud growth // inferred from physical interaction /// 7119 // budding cell isotropic bud growth // inferred from physical interaction /// 16192 // vesicle-mediated transport // inferred from physical interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction 30478 // actin cap // inferred from physical interaction 146 // microfilament motor activity // inferred from physical interaction 1565.17395019531 759.652587890625 987.685119628906 1597.55480957031 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL106W /GEN=MLC1 /DB_XREF=GI:6321332 /SEG=NC_001139:+306561,307010 /DEF=may stabilize Myo2p by binding to the neck region /NOTE=Mlc1p; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IPI] [pmid 10652251]; go_function: microfilament motor activity [goid GO:0000146] [evidence IPI] [pmid 9700160]; go_process: apical bud growth [goid GO:0007118] [evidence IPI] [pmid 10652251]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251]; go_process: endocytosis [goid GO:0006897] [evidence IPI] [pmid 10652251]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IPI] [pmid 10652251]; go_process: isotropic bud growth [goid GO:0007119] [evidence IPI] [pmid 10652251]; go_process: mitochondrion inheritance [goid GO:0000001] [evidence TAS] [pmid 10652251]; go_process: vacuole inheritance [goid GO:0000011] [evidence TAS] [pmid 10652251]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IPI] [pmid 10652251] --- --- --- --- --- --- S0003074 // MLC1 SGDID:S0003074, Chr VII from 306563-307012, Verified ORF // sgd // 11 // --- /// GENSCAN00000019272 // cdna:Genscan chromosome:SGD1:VII:306563:307012:1 // ensembl // 11 // --- /// GENEFINDER00000021744 // cdna:GeneFinder chromosome:SGD1:VII:306563:307012:1 // ensembl // 11 // --- /// YGL106W // cdna:known chromosome:SGD1:VII:306563:307012:1 gene:YGL106W // ensembl // 11 // --- --- No cerevisiae_gene 1.14500263416396 -2.06038125209503 1.12152328378661 -1.5846892082199 1.02068834545257 Max fold change below threshold 4 2.06038125209503 Max fold change at or above threshold 0.80534989471206 -1.11590719109748 -0.572024511010903 0.882581807396319 1227.51661682129 419.267868029892 0.341557794236306 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777500_at SPAC10F6.04.S1 --- 2.0600976452043 --- --- --- --- 5.96218252182007 6.86597919464111 7.83259057998657 2.89412617683411 0.466064006090164 0.303710997104645 0.194580003619194 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC10F6.04 /DEF=involved in microtubule-based process (regulation) (predicted) --- --- --- --- --- --- SPAC10F6.04 // |||regulator of condensation |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.00024667932751 1.15158822620968 -1.31244484727807 1.31371197566014 -2.0600976452043 Max fold change below threshold 4 2.0600976452043 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779193_at YLR116W.S1 Component of the commitment complex, which defines the first step in the splicing pathway; essential protein that interacts with Mud2p and Prp40p, forming a bridge between the intron ends; also involved in nuclear retention of pre-mRNA 2.05985826948019 557.357437133789 716.150695800781 MSL5 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 243 // commitment complex // inferred from direct assay 3723 // RNA binding // inferred from direct assay 672.4462890625 420.925689697266 693.789184570313 759.855102539063 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR116W /GEN=MSL5 /DB_XREF=GI:6323145 /SEG=NC_001144:+380823,382253 /DEF=branchpoint bridging protein -- component of the splicing commitment complex /NOTE=Msl5p; go_component: commitment complex [goid GO:0000243] [evidence IDA] [pmid 10376880]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 9182766]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 9182766] --- --- --- --- --- --- S0004106 // MSL5 SGDID:S0004106, Chr XII from 380823-382253, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024672 // cdna:GeneFinder chromosome:SGD1:XII:380877:382253:1 // ensembl // 11 // --- /// GENSCAN00000017910 // cdna:Genscan chromosome:SGD1:XII:381027:382253:1 // ensembl // 11 // --- /// YLR116W // cdna:known chromosome:SGD1:XII:380823:382253:1 gene:YLR116W // ensembl // 11 // --- --- No cerevisiae_gene -2.05985826948019 -1.59754157449057 1.07440412222166 1.03173918252649 1.12998631251044 Max fold change below threshold 4 2.05985826948019 Max fold change at or above threshold 0.24015944977102 -1.45222741654114 0.383767711430909 0.828300255339213 636.754066467285 148.61885563631 0.233400716953169 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774341_at YDR326C.S1 Hypothetical protein 2.0594952439183 591.814025878906 1185.51794433594 --- --- --- --- 1127.03991699219 636.38720703125 547.240844726563 1243.99597167969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR326C /GEN=YCG1 /DB_XREF=GI:6320533 /SEG=NC_001136:-1120600,1124916 /DEF=Hypothetical ORF /NOTE=Ydr326cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002734 // span:1280-1302 // numtm:1 S0002734 // YDR326C SGDID:S0002734, Chr IV from 1124918-1120602, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023562 // cdna:GeneFinder chromosome:SGD1:IV:1120602:1123424:-1 // ensembl // 11 // --- /// GENSCAN00000025356 // cdna:Genscan chromosome:SGD1:IV:1120602:1124825:-1 // ensembl // 11 // --- /// YDR326C // cdna:known chromosome:SGD1:IV:1120602:1124918:-1 gene:YDR326C // ensembl // 11 // --- --- No cerevisiae_gene -1.3639970189978 -1.77099712964036 1.04179303348713 -2.0594952439183 1.10377277053295 Max fold change below threshold 4 2.0594952439183 Max fold change at or above threshold 0.68499647828153 -0.724953744568365 -0.981126656377532 1.02108392266437 888.665985107422 347.992930537075 0.391590244668822 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772452_at YOR054C.S1 Functionally redundant (see also SIS2) inhibitory subunit of Ppz1p, a PP1c-related ser/thr protein phosphatase Z isoform; synthetically lethal with sis2; putative phosphopantothenoylcysteine decarboxylase involved in coenzyme A biosynthesis 2.05931648279687 1520.26531982422 1393.48004150391 VHS3 82 // G1/S transition of mitotic cell cycle // inferred from genetic interaction /// 15937 // coenzyme A biosynthesis // inferred from sequence similarity /// 30004 // monovalent inorganic cation homeostasis // inferred from genetic interaction /// 30004 // monovalent inorganic cation homeostasis // inferred from physical interaction --- 4633 // phosphopantothenoylcysteine decarboxylase activity // inferred from sequence similarity /// 4864 // protein phosphatase inhibitor activity // inferred from direct assay 1396.54211425781 1534.34643554688 1506.18420410156 1390.41796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR054C /GEN=VHS3 /DB_XREF=GI:6324629 /SEG=NC_001147:-427834,429858 /DEF=Gene whose overexpression suppresses the synthetic lethality of the hal3 sit4 double mutation /NOTE=Vhs3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: phosphopantothenoylcysteine decarboxylase activity [goid GO:0004633] [evidence ISS] [pmid 10592175]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IGI] [pmid 12518319]; go_process: coenzyme A biosynthesis [goid GO:0015937] [evidence ISS] [pmid 10592175] --- --- --- --- --- --- S0005580 // VHS3 SGDID:S0005580, Chr XV from 429858-427834, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022893 // cdna:GeneFinder chromosome:SGD1:XV:427834:429858:-1 // ensembl // 10 // --- /// YOR054C // cdna:known chromosome:SGD1:XV:427834:429858:-1 gene:YOR054C // ensembl // 11 // --- YOR053W // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene -2.05931648279687 1.09867537819459 1.09949763440725 1.07850969098917 -1.00440453564716 Max fold change below threshold 4 2.05931648279687 Max fold change at or above threshold -0.813748382139102 1.0449784653041 0.66512175847769 -0.896351841642685 1456.87268066406 74.1390922924589 0.0508892048539652 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772529_at YCL005W.S1 Hypothetical protein 2.05899798627112 399.723754882813 765.320495605469 --- --- 5739 // mitochondrion // inferred from direct assay /// 5811 // lipid particle // inferred from direct assay --- 735.781372070313 357.349243164063 442.098266601563 794.859619140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL005W /GEN=VMA9 /DB_XREF=GI:10383777 /SEG=NC_001135:+108020,108790 /DEF=Hypothetical ORF /NOTE=Ycl005wp; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000511 // span:29-51,72-94 // numtm:2 S0000511 // YCL005W SGDID:S0000511, Chr III from 108020-108790, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022460 // cdna:Genscan chromosome:SGD1:III:108020:108790:1 // ensembl // 11 // --- /// YCL005W // cdna:known chromosome:SGD1:III:108020:108790:1 gene:YCL005W // ensembl // 11 // --- GENEFINDER00000023344 // ensembl // 3 // Cross Hyb Matching Probes No cerevisiae_gene 1.13211318550363 -2.05899798627112 1.3402919707787 -1.66429372756041 1.08029320843511 Max fold change below threshold 4 2.05899798627112 Max fold change at or above threshold 0.712006797857123 -1.04610081319229 -0.652376571106635 0.9864705864418 582.522125244141 215.249696052658 0.369513339879484 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774398_at SPCC830.05c.S1 --- 2.05851509821716 --- --- --- --- 1.0493985414505 0.686870396137238 1.1576292514801 0.509982526302338 0.82275390625 0.989257991313934 0.828612983226776 0.774169921875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC830.05c /DEF=histone acetyltransferase complex (predicted) --- --- --- --- --- --- SPCC830.05c // |||histone acetyltransferase complex |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.77486263856737 -1.52779701578641 2.05851509821716 1.10313594478605 -2.05771470065697 Max fold change below threshold 0 2.05851509821716 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774994_at SPCP1E11.06.S1 --- 2.05832653575269 --- --- --- --- 3.69154214859009 7.35573768615723 7.59839916229248 2.3211874961853 0.525390625 0.398925989866257 0.111571997404099 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP1E11.06 /GEN=apl4 /DEF=adaptin (predicted) --- --- --- --- --- --- SPCP1E11.06 // |apl4||adaptin |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.13188365642024 1.99259209026412 1.28253793566679 2.05832653575269 -1.59036792790624 Max fold change below threshold 3 2.05832653575269 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776066_at SPBC409.06.S1 --- 2.05817010460235 --- --- --- --- 11.125922203064 6.99398469924927 7.9765887260437 5.40573501586914 0.0375977009534836 0.111571997404099 0.111571997404099 0.030273400247097 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC409.06 /GEN=uch2 /DEF=ubiquitin C-terminal hydrolase activity --- --- --- --- --- --- SPBC409.06 // |uch2||ubiquitin C-terminal hydrolase activity|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.65036571486046 -1.59078446429233 -1.02215963138951 -1.39482209565821 -2.05817010460235 Max fold change below threshold 4 2.05817010460235 Max fold change at or above threshold PAAAAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1775794_at SPBC2D10.07c.S1 --- 2.05731879350339 --- --- --- --- 5.01386690139771 10.3151226043701 6.29156112670898 3.34551334381104 0.533936023712158 0.194580003619194 0.366210997104645 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2D10.07c /DEF=mitochondrial inner membrane peptidase complex --- --- --- --- --- --- SPBC2D10.07c // |||mitochondrial inner membrane peptidase complex|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 1.25669869853477 2.05731879350339 -1.98534429345551 1.254832098745 -1.49868387482985 Max fold change below threshold 4 2.05731879350339 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772329_at SPCC16A11.17.S1 --- 2.05696398314175 --- --- --- --- 0.768237173557281 0.716880440711975 0.428098797798157 1.58023619651794 0.805419981479645 0.919434010982513 0.969726979732513 0.557373046875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16A11.17 /GEN=cdc21 /DEF=MCM complex subunit --- --- --- --- --- --- SPCC16A11.17 // |cdc21|mcm4, SPCC24B10.01|MCM complex subunit|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.51145090893697 -1.07163918825056 -1.02662274240874 -1.79453242454443 2.05696398314175 Max fold change below threshold 0 2.05696398314175 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771629_at YOR213C.S1 Subunit of the SAS complex (Sas2p, Sas4p, Sas5p), which acetylates free histones and nucleosomes and regulates transcriptional silencing; stimulates Sas2p HAT activity 2.05650480353767 349.120941162109 281.097473144531 SAS5 6348 // chromatin silencing at telomere // inferred from direct assay 784 // nuclear chromosome, telomeric region // inferred from curator /// 790 // nuclear chromatin // inferred from direct assay 4406 // H3/H4 histone acetyltransferase activity // inferred from direct assay /// 16407 // acetyltransferase activity // inferred from direct assay 255.536254882813 277.864318847656 420.377563476563 306.65869140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR213C /GEN=SAS5 /DB_XREF=GI:6324787 /SEG=NC_001147:-744535,745281 /DEF=Involved in silencing at telomeres, HML and HMR /NOTE=Sas5p; go_component: nuclear chromatin [goid GO:0000790] [evidence IDA] [pmid 11731479]; go_component: nuclear chromosome, telomeric region [goid GO:0000784] [evidence IC] [pmid 11731479]; go_function: H3/H4 histone acetyltransferase activity [goid GO:0004406] [evidence IDA] [pmid 12626510]; go_function: acetyltransferase activity [goid GO:0016407] [evidence IDA] [pmid 11731479]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IDA] [pmid 11731479] --- --- --- --- --- --- S0005739 // SAS5 SGDID:S0005739, Chr XV from 745281-744535, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017628 // cdna:Genscan chromosome:SGD1:XV:744535:745281:-1 // ensembl // 11 // --- /// YOR213C // cdna:known chromosome:SGD1:XV:744535:745281:-1 gene:YOR213C // ensembl // 11 // --- --- No cerevisiae_gene -1.18973059959301 1.0873772841943 2.05650480353767 1.64507992679687 1.20005942619329 Max fold change below threshold 4 2.05650480353767 Max fold change at or above threshold -0.813478001380512 -0.508584787991635 1.43745590652616 -0.115393117154016 315.10920715332 73.2324072309388 0.232403260737813 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773475_at YOR086C.S1 Contains three calcium and lipid binding domains; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery; C-terminal portion of Tcb1p, Tcb2p and Tcb3p interact 2.05636586462244 2255.85321044922 2598.67272949219 TCB1 --- 5739 // mitochondrion // inferred from direct assay 8289 // lipid binding // inferred from direct assay 2542.48779296875 2001.93249511719 2509.77392578125 2654.85766601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR086C /GEN=TCB1 /DB_XREF=GI:6324660 /SEG=NC_001147:-483220,486780 /DEF=Contains three calcium and lipid binding domains; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery; C-terminal portion of Tcb1p,Tcb2p and Tcb3p interact /NOTE=Tcb1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.1.Centromere-binding // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding // 1.79999995231628 S0005612 // span:103-125,132-149 // numtm:2 S0005612 // TCB1 SGDID:S0005612, Chr XV from 486780-483220, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017526 // cdna:Genscan chromosome:SGD1:XV:483220:486780:-1 // ensembl // 11 // --- /// GENEFINDER00000022749 // cdna:GeneFinder chromosome:SGD1:XV:483220:486780:-1 // ensembl // 11 // --- /// YOR086C // cdna:known chromosome:SGD1:XV:483220:486780:-1 gene:YOR086C // ensembl // 11 // --- --- No cerevisiae_gene -2.05636586462244 -1.27001674590427 1.05118566011429 -1.01303458723969 1.04419681909885 Max fold change below threshold 4 2.05636586462244 Max fold change at or above threshold 0.396941567839881 -1.46523414960071 0.284244551748722 0.784048030012108 2427.2629699707 290.281573746709 0.119592140339954 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778423_at YNR046W.S1 Subunit of an adoMet-dependent tRNA methyltransferase (MTase) complex (Trm11p-Trm112p), required for the methylation of the guanosine nucleotide at position 10 (m2G10) in tRNAs; putative zinc binding subunit of other MTase-related proteins 2.05635933248863 497.38703918457 1048.42559814453 TRM112 30488 // tRNA methylation // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4809 // tRNA (guanine-N2-)-methyltransferase activity // inferred from direct assay /// 4809 // tRNA (guanine-N2-)-methyltransferase activity // inferred from mutant phenotype /// 8270 // zinc ion binding // inferred from sequence similarity 939.20654296875 456.732696533203 538.041381835938 1157.64465332031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR046W /GEN=PET494 /DB_XREF=GI:6324374 /SEG=NC_001146:+707787,708194 /DEF=Protein required for cell viability /NOTE=Ynr046wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14690591]; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14690591]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005329 // YNR046W SGDID:S0005329, Chr XIV from 707788-708195, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020073 // cdna:Genscan chromosome:SGD1:XIV:707788:708195:1 // ensembl // 11 // --- /// GENEFINDER00000020463 // cdna:GeneFinder chromosome:SGD1:XIV:707788:708195:1 // ensembl // 11 // --- /// YNR046W // cdna:known chromosome:SGD1:XIV:707788:708195:1 gene:YNR046W // ensembl // 11 // --- --- No cerevisiae_gene 1.10491280195685 -2.05635933248863 -1.20662475409507 -1.74560280059488 1.23257728769765 Max fold change below threshold 4 2.05635933248863 Max fold change at or above threshold 0.50080233785018 -0.952136353347901 -0.707280521929124 1.15861453742684 772.906318664551 332.067587819348 0.429634976193626 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775981_at YMR315W-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 2.05634674700224 24.3609848022461 12.3607349395752 --- --- --- --- 13.0117120742798 26.756591796875 21.9653778076172 11.7097578048706 0.030273400247097 0.014160200022161 0.0461426004767418 0.0952147990465164 P P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR315W-A /GEN=PRE5 /DB_XREF=GI:33438862 /SEG=NC_001145:+904285,904392 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ymr315w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028697 // YMR315W-A SGDID:S0028697, Chr XIII from 904285-904392, Uncharacterized ORF // sgd // 11 // --- /// YMR315W-A // cdna:known chromosome:SGD1:XIII:904285:904392:1 gene:YMR315W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.80924567104588 2.05634674700224 2.03953892798977 1.68812356761537 -1.11118541400298 Max fold change below threshold 4 2.05634674700224 Max fold change at or above threshold -0.741006656808738 1.16304381229468 0.499326600653724 -0.921363756139665 18.3608598709106 7.21875808736699 0.393160131830414 PPPPPA Called_P_>2EXP 4 0 PPPA 1 3 0 Yes Yes 2 < x = 3
1774163_at YKL096C-B.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 2.05572113479158 4.31114900112152 6.19672465324402 --- --- --- --- 6.96844100952148 5.23251867294312 3.38977932929993 5.42500829696655 0.0805663987994194 0.303710997104645 0.018554700538516 0.014160200022161 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL096C-B /GEN=UTP11 /DB_XREF=GI:33578047 /SEG=NC_001143:-258718,258867 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ykl096c-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028667 // span:31-48 // numtm:1 S0028667 // YKL096C-B SGDID:S0028667, Chr XI from 258867-258718, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YKL096C-B // cdna:known chromosome:SGD1:XI:258718:258867:-1 gene:YKL096C-B // ensembl // 11 // --- --- No cerevisiae_gene 1.24617418508979 -1.33175654882125 -1.70175254936014 -2.05572113479158 -1.28450329069874 Max fold change below threshold 4 2.05572113479158 Max fold change at or above threshold 1.16979624945411 -0.014613482287107 -1.27190383778504 0.116721070618034 5.25393682718277 1.46564342562971 0.278960991317364 AAAAPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1769502_at YPL050C.S1 Subunit of Golgi mannosyltransferase complex also containing Anp1p, Mnn10p, Mnn11p, and Hoc1p that mediates elongation of the polysaccharide mannan backbone; forms a separate complex with Van1p that is also involved in backbone elongation 2.05510220469545 413.613861083984 840.310363769531 MNN9 6487 // N-linked glycosylation // inferred from mutant phenotype /// 6487 // N-linked glycosylation // inferred from direct assay 136 // alpha-1,6-mannosyltransferase complex // inferred from physical interaction /// 5801 // Golgi cis-face // traceable author statement /// 16020 // membrane // traceable author statement 30 // mannosyltransferase activity // inferred from mutant phenotype /// 30 // mannosyltransferase activity // inferred from direct assay /// 30 // mannosyltransferase activity // inferred from sequence similarity 813.825866699219 396.002624511719 431.22509765625 866.794860839844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL050C /GEN=MNN9 /DB_XREF=GI:6325207 /SEG=NC_001148:-460774,461961 /DEF=Protein required for complex glycosylation /NOTE=Mnn9p; go_component: Golgi cis-face [goid GO:0005801] [evidence TAS] [pmid 10500155]; go_component: mannosyltransferase complex [goid GO:0000136] [evidence IPI] [pmid 9430634]; go_component: membrane [goid GO:0016020] [evidence TAS] [pmid 10500155]; go_function: mannosyltransferase activity [goid GO:0000030] [evidence IDA,IMP] [pmid 9430634]; go_function: mannosyltransferase activity [goid GO:0000030] [evidence ISS] [pmid 9434768]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IDA,IMP] [pmid 9430634] --- --- --- --- --- S0005971 // span:13-32 // numtm:1 S0005971 // MNN9 SGDID:S0005971, Chr XVI from 461963-460776, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017151 // cdna:Genscan chromosome:SGD1:XVI:460776:461756:-1 // ensembl // 11 // --- /// GENEFINDER00000020897 // cdna:GeneFinder chromosome:SGD1:XVI:460776:461756:-1 // ensembl // 11 // --- /// YPL050C // cdna:known chromosome:SGD1:XVI:460776:461963:-1 gene:YPL050C // ensembl // 11 // --- --- No cerevisiae_gene 1.36497330865505 -2.05510220469545 -1.31475108594444 -1.88724142245533 1.06508639785002 Max fold change below threshold 4 2.05510220469545 Max fold change at or above threshold 0.754339713793141 -0.932347285271882 -0.790159676902462 0.968167248381203 626.962112426758 247.718303644429 0.395108888933647 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770384_at YDR415C.S1 Hypothetical protein 2.05446950799722 411.207977294922 282.314041137695 --- --- --- --- 250.36181640625 308.055236816406 514.360717773438 314.266265869141 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR415C /GEN=ERD1 /DB_XREF=GI:6320623 /SEG=NC_001136:-1297025,1298149 /DEF=Hypothetical ORF /NOTE=Ydr415cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002823 // YDR415C SGDID:S0002823, Chr IV from 1298151-1297027, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023414 // cdna:GeneFinder chromosome:SGD1:IV:1297027:1298049:-1 // ensembl // 11 // --- /// GENSCAN00000025428 // cdna:Genscan chromosome:SGD1:IV:1297027:1298151:-1 // ensembl // 11 // --- /// YDR415C // cdna:known chromosome:SGD1:IV:1297027:1298151:-1 gene:YDR415C // ensembl // 11 // --- --- No cerevisiae_gene 1.74279095098695 1.2304401734989 1.65789319071422 2.05446950799722 1.25524838563719 Max fold change below threshold 4 2.05446950799722 Max fold change at or above threshold -0.835504820332186 -0.33546815561535 1.45260930412209 -0.281636328174557 346.761009216309 115.378380189035 0.332731700284857 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778283_at YFL034W.S1 Possible integral membrane protein that interacts with Rpp0p, which is a component of the ribosomal stalk 2.05424906864351 305.605682373047 312.156692504883 --- --- 16021 // integral to membrane // inferred from sequence similarity --- 299.450622558594 348.588104248047 262.623260498047 324.862762451172 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL034W /GEN=RPL22B /DB_XREF=GI:14318485 /SEG=NC_001138:+65475,68696 /DEF=Hypothetical ORF /NOTE=Yfl034wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001860 // span:294-316,543-565,585-607,818-840 // numtm:4 S0001860 // YFL034W SGDID:S0001860, Chr VI from 65475-68696, Uncharacterized ORF // sgd // 10 // --- /// GENEFINDER00000018511 // cdna:GeneFinder chromosome:SGD1:VI:65475:68696:1 // ensembl // 10 // --- /// GENSCAN00000023213 // cdna:Genscan chromosome:SGD1:VI:65475:68696:1 // ensembl // 10 // --- /// YFL034W // cdna:known chromosome:SGD1:VI:65475:68696:1 gene:YFL034W // ensembl // 10 // --- --- No cerevisiae_gene -2.05424906864351 1.16409210062617 -1.15537911841744 -1.14022886621203 1.08486253818893 Max fold change below threshold 4 2.05424906864351 Max fold change at or above threshold -0.25632651456878 1.07924983487776 -1.25730890295049 0.434385582641507 308.881187438965 36.7912187946542 0.119111232055608 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-YER148w5_at AFFX-YER148w5 TATA-binding protein, general transcription factor that interacts with other factors to form the preinitiation complex at promoters, essential for viability 2.05263459514432 307.932342529297 314.279876708984 SPT15 6360 // transcription from RNA polymerase I promoter // traceable author statement /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 6384 // transcription initiation from RNA polymerase III promoter // traceable author statement 120 // RNA polymerase I transcription factor complex // traceable author statement /// 126 // transcription factor TFIIIB complex // traceable author statement /// 5634 // nucleus // inferred from direct assay /// 5669 // transcription factor TFIID complex // traceable author statement /// 5669 // transcription factor TFIID complex // inferred from direct assay 3677 // DNA binding // inferred from physical interaction /// 3677 // DNA binding // traceable author statement /// 3701 // RNA polymerase I transcription factor activity // traceable author statement /// 3709 // RNA polymerase III transcription factor activity // traceable author statement /// 16251 // general RNA polymerase II transcription factor activity // traceable author statement 285.431274414063 230.309478759766 385.555206298828 343.128479003906 2.57263765846005E-10 2.57263765846005E-10 2.73076006251927E-10 2.57263765846005E-10 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /GEN=TFIID /DB_XREF=gb:X16860.1 /DB_XREF=spd:YER148W /NOTE=SIF corresponding to nucleotides 288-471 of gb:X16860.1 /DEF=Yeast gene for transcription initiation factor IID (TFIID). --- --- --- --- --- --- S0000950 // SPT15 SGDID:S0000950, Chr V from 465298-466020, Verified ORF // sgd // 50 // --- /// GENSCAN00000016927 // cdna:Genscan chromosome:SGD1:V:465298:466020:1 // ensembl // 50 // --- /// GENEFINDER00000019595 // cdna:GeneFinder chromosome:SGD1:V:465298:466020:1 // ensembl // 50 // --- /// YER148W // cdna:known chromosome:SGD1:V:465298:466020:1 gene:YER148W // ensembl // 50 // --- YER147C-A // ensembl // 50 // Negative Strand Matching Probes AFFX_control cerevisiae_gene 2.05263459514432 -1.2393379375922 -1.07583320316301 1.35078122427299 1.20214044416922 Max fold change below threshold 4 2.05263459514432 Max fold change at or above threshold -0.379168100454292 -1.19321136051524 1.09947044812937 0.472909012840159 311.106109619141 67.7135950369148 0.217654340250053 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 No No 3 < x
1776233_at YAL051W.S1 Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p; activates genes involved in beta-oxidation of fatty acids and peroxisome organization and biogenesis 2.05244792058823 649.064788818359 1283.15808105469 OAF1 6631 // fatty acid metabolism // inferred from genetic interaction /// 6631 // fatty acid metabolism // inferred from mutant phenotype /// 7031 // peroxisome organization and biogenesis // inferred from genetic interaction /// 7031 // peroxisome organization and biogenesis // inferred from mutant phenotype /// 45941 // positive regulation of transcription // inferred from mutant phenotype /// 45941 // positive regulation of transcription // inferred from genetic interaction /// 45941 // positive regulation of transcription // inferred from physical interaction 5634 // nucleus // inferred from physical interaction 3677 // DNA binding // inferred from direct assay /// 3677 // DNA binding // inferred from physical interaction /// 3677 // DNA binding // inferred from sequence similarity /// 16563 // transcriptional activator activity // inferred from mutant phenotype /// 16563 // transcriptional activator activity // inferred from sequence similarity /// 16563 // transcriptional activator activity // inferred from physical interaction 1219.54052734375 676.957702636719 621.171875 1346.77563476563 0.00122069998178631 0.00585938012227416 0.00195312988944352 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL051W /GEN=OAF1 /DB_XREF=GI:6319266 /SEG=NC_001133:+48565,51753 /DEF=Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p; activates genes involved in beta-oxidation of fatty acids and peroxisome organization and biogenesis /NOTE=Oaf1p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 8662598]; go_function: DNA binding [goid GO:0003677] [evidence IDA,IPI,ISS] [pmid 8662598]; go_function: transcriptional activator activity [goid GO:0016563] [evidence IMP,IPI,ISS] [pmid 8662598]; go_process: fatty acid metabolism [goid GO:0006631] [evidence IGI,IMP] [pmid 8662598]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence IGI,IMP] [pmid 9774671]; go_process: positive regulation of transcription [goid GO:0045941] [evidence IGI,IMP,IPI] [pmid 8662598] --- --- --- --- --- --- S0000048 // OAF1 SGDID:S0000048, Chr I from 48565-51708, Verified ORF // sgd // 10 // --- /// GENSCAN00000020333 // cdna:Genscan chromosome:SGD1:I:48565:51708:1 // ensembl // 10 // --- /// GENEFINDER00000018202 // cdna:GeneFinder chromosome:SGD1:I:50602:51708:1 // ensembl // 10 // --- /// YAL051W // cdna:known chromosome:SGD1:I:48565:51708:1 gene:YAL051W // ensembl // 10 // --- --- No cerevisiae_gene -2.05244792058823 -1.80150181110828 -1.01736785158746 -1.96328999496919 1.1043303642389 Max fold change below threshold 4 2.05244792058823 Max fold change at or above threshold 0.684090603044936 -0.780523456177705 -0.931108221750087 1.02754107488286 966.111434936523 370.461297493629 0.383456073592556 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1778224_at SPBC646.11.S1 --- 2.05244284520414 --- --- --- --- 5.78512048721313 9.18534278869629 10.3353910446167 5.61705827713013 0.274170011281967 0.24609400331974 0.00415039015933871 0.00292969006113708 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC646.11 /GEN=cct6 /DEF=chaperonin-containing T-complex --- --- --- --- --- --- SPBC646.11 // |cct6||chaperonin-containing T-complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.2252861081764 1.58775306564464 -2.05244284520414 1.78654724088479 -1.02991996909971 Max fold change below threshold 4 2.05244284520414 Max fold change at or above threshold AAAAPP No 2 0 AAPP 2 2 0 No No 1 < x = 2
1779568_at YBR050C.S1 Protein that binds type 1 protein phosphatase Glc7p; involved with Reg1p, Glc7p, and Snf1p in regulation of glucose-repressible genes 2.05129018376249 3274.68872070313 1704.15582275391 REG2 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction 164 // protein phosphatase type 1 complex // inferred from physical interaction 163 // protein phosphatase type 1 activity // inferred from genetic interaction /// 163 // protein phosphatase type 1 activity // inferred from physical interaction 1671.90747070313 3429.5673828125 3119.81005859375 1736.40417480469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR050C /GEN=REG2 /DB_XREF=GI:6319525 /SEG=NC_001134:-337143,338159 /DEF=Possible regulatory subunit for the PP1 family protein phosphatase Glc7p /NOTE=Reg2p; go_component: protein phosphatase type 1 complex [goid GO:0000164] [evidence IPI] [pmid 8649403]; go_function: protein phosphatase type 1 activity [goid GO:0000163] [evidence IGI,IPI] [pmid 8649403]; go_process: cell growth and/or maintenance [goid GO:0008151] [evidence IMP] [pmid 8649403]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IGI] [pmid 8649403] --- --- --- --- scop // a.1.2.Dihydropyrimidine dehydrogenase, N-terminal domain // All alpha proteins; Globin-like; alpha-helical ferredoxin; Dihydropyrimidine dehydrogenase, N-terminal domain // 2.29999995231628 --- S0000254 // REG2 SGDID:S0000254, Chr II from 338197-337181, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021181 // cdna:Genscan chromosome:SGD1:II:337181:337993:-1 // ensembl // 11 // --- /// GENEFINDER00000022374 // cdna:GeneFinder chromosome:SGD1:II:337181:338197:-1 // ensembl // 11 // --- /// YBR050C // cdna:known chromosome:SGD1:II:337181:338197:-1 gene:YBR050C // ensembl // 11 // --- --- No cerevisiae_gene 1.03538979164102 2.05129018376249 1.34003238546915 1.86601837318288 1.03857671864726 Max fold change below threshold 4 2.05129018376249 Max fold change at or above threshold -0.892579100967368 1.02646933973266 0.688270063557545 -0.822160302322836 2489.42227172852 915.901795302374 0.367917410277856 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779211_at YLL057C.S1 Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase, involved in sulfonate catabolism for use as a sulfur source, contains sequence that closely resembles a J domain (typified by the E. coli DnaJ protein) 2.05064520840713 131.991035461426 108.223987579346 JLP1 6790 // sulfur metabolism // inferred from direct assay /// 6790 // sulfur metabolism // inferred from mutant phenotype --- 907 // sulfonate dioxygenase activity // inferred from direct assay 113.608741760254 131.89875793457 132.083312988281 102.839233398438 0.000732421991415322 0.00805663969367743 0.00415039015933871 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL057C /GEN=JLP1 /DB_XREF=GI:6322971 /SEG=NC_001144:-25756,26994 /DEF=similar to Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; EC 1.14.11.17 /NOTE=Jlp1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: sulfonate dioxygenase activity [goid GO:0000907] [evidence IDA] [pmid 10482536]; go_process: sulfur metabolism [goid GO:0006790] [evidence IDA,IMP] [pmid 10482536] --- --- --- --- --- --- S0003980 // JLP1 SGDID:S0003980, Chr XII from 26994-25756, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017656 // cdna:Genscan chromosome:SGD1:XII:25756:26994:-1 // ensembl // 11 // --- /// GENEFINDER00000024638 // cdna:GeneFinder chromosome:SGD1:XII:25756:26994:-1 // ensembl // 11 // --- /// YLL057C // cdna:known chromosome:SGD1:XII:25756:26994:-1 gene:YLL057C // ensembl // 11 // --- --- No cerevisiae_gene -1.38740953282142 1.16099127488722 2.05064520840713 1.16261575422615 -1.10472178764783 Max fold change below threshold 4 2.05064520840713 Max fold change at or above threshold -0.451013273469444 0.818310055569402 0.831118138019119 -1.19841492011908 120.107511520386 14.4092649649526 0.119969723646359 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1776890_at SPCC622.01c.S1 --- 2.05046731363878 --- --- --- --- 0.46810856461525 0.959841310977936 0.837624132633209 0.690183222293854 0.981445014476776 0.932372987270355 0.962401986122131 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC622.01c /DEF=sequence orphan --- --- --- --- --- --- SPCC622.01c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.35211522267263 2.05046731363878 1.17740805012148 1.78938006255381 1.47440844809394 Max fold change below threshold 0 2.05046731363878 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779727_at YHR021C.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps27Ap and has similarity to rat S27 ribosomal protein 2.04985714424968 3558.27221679688 5003.76538085938 RPS27B 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 5852.8095703125 4261.31640625 2855.22802734375 4154.72119140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR021C /GEN=RPS27B /DB_XREF=GI:6321809 /SEG=NC_001140:-147863,148661 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps27Ap and has similarity to rat S27 ribosomal protein /NOTE=Rps27bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0001063 // RPS27B SGDID:S0001063, Chr VIII from 148661-148659,148108-147863, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020272 // cdna:GeneFinder chromosome:SGD1:VIII:147863:148201:-1 // ensembl // 11 // --- /// YHR021C // cdna:known chromosome:SGD1:VIII:147863:148661:-1 gene:YHR021C // ensembl // 11 // --- --- No cerevisiae_gene -1.29329344082587 -1.3734745351761 -1.51276912614487 -2.04985714424968 -1.40871295585818 Max fold change below threshold 4 2.04985714424968 Max fold change at or above threshold 1.28055549447753 -0.0160517592595638 -1.16160766402478 -0.102896071193185 4281.01879882813 1227.42886057092 0.286714195440326 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772470_at YGL065C.S1 Presumed early mannosyltransferase involved in the N-linked glycosylation pathway; alg2 mutants exhibit temperature-sensitive growth and abnormal accumulation of the lipid-linked oligosaccharide Man2GlcNAc2-PP-Dol 2.04942450374616 277.811515808105 548.672332763672 ALG2 6490 // oligosaccharide-lipid intermediate assembly // traceable author statement 5783 // endoplasmic reticulum // traceable author statement 4376 // glycolipid mannosyltransferase activity // traceable author statement 522.051208496094 254.73063659668 300.892395019531 575.29345703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL065C /GEN=ALG2 /DB_XREF=GI:6321373 /SEG=NC_001139:-379761,381272 /DEF=Mannosyltransferase, mannosylates Man2GlcNAc2-PP-Dol to form Man3GlcNAc2-PP-Dol, which is a precursor required for asparagine-linked protein glycosylation /NOTE=Alg2p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS] [pmid 11278778]; go_function: glycolipid mannosyltransferase activity [goid GO:0004376] [evidence TAS] [pmid 9878760]; go_process: oligosaccharide-lipid intermediate assembly [goid GO:0006490] [evidence TAS] [pmid 6369318] --- --- --- --- --- S0003033 // span:73-95,105-127,441-460,470-492 // numtm:4 S0003033 // ALG2 SGDID:S0003033, Chr VII from 381274-379763, reverse complement, Verified ORF // sgd // 11 // --- /// YGL065C // cdna:known chromosome:SGD1:VII:379763:381274:-1 gene:YGL065C // ensembl // 11 // --- --- No cerevisiae_gene -1.09932010367682 -2.04942450374616 1.09947380463207 -1.73500964842334 1.10198663975615 Max fold change below threshold 4 2.04942450374616 Max fold change at or above threshold 0.68431073892535 -0.996890818590993 -0.706575637807253 1.0191557174729 413.241924285889 159.005665147211 0.384776218971452 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774480_at YNL026W.S1 Essential component of the Sorting and Assembly Machinery (SAM complex) of the mitochondrial outer membrane; the authentic, non-tagged protein was localized to the mitochondria 2.04914978056585 449.230010986328 278.198867797852 SAM50 6461 // protein complex assembly // inferred from mutant phenotype /// 6461 // protein complex assembly // inferred from physical interaction /// 45040 // mitochondrial outer membrane protein import // inferred from mutant phenotype 1401 // mitochondrial sorting and assembly machinery complex // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5741 // mitochondrial outer membrane // inferred from direct assay --- 260.402099609375 364.857116699219 533.602905273438 295.995635986328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL026W /GEN=SAM50 /DB_XREF=GI:6324302 /SEG=NC_001146:+581918,583372 /DEF=Essential component of the Sorting and Assembly Machinery (SAM complex) of the mitochondrial outer membrane; the authentic, non-tagged protein was localized to the mitochondria /NOTE=Sam50p; go_component: mitochondrial outer membrane [goid GO:0005741] [evidence IDA] [pmid 14685243]; go_component: mitochondrial sorting and assembly machinery complex [goid GO:0001401] [evidence IDA] [pmid 14570913]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP,IPI] [pmid 14685243] --- --- --- --- --- --- S0004971 // SAM50 SGDID:S0004971, Chr XIV from 581919-583373, Verified ORF // sgd // 11 // --- /// YNL026W // cdna:known chromosome:SGD1:XIV:581919:583373:1 gene:YNL026W // ensembl // 11 // --- --- No cerevisiae_gene 1.12123584413003 1.40112970381781 1.1183288455823 2.04914978056585 1.13668682560681 Max fold change below threshold 4 2.04914978056585 Max fold change at or above threshold -0.851886861480992 0.00942222184593732 1.40085639630142 -0.558391756666366 363.71443939209 121.274719043217 0.333433886336529 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773258_at YDR060W.S1 Constituent of 66S pre-ribosomal particles, required for large (60S) ribosomal subunit biogenesis; involved in nuclear export of pre-ribosomes; required for maintenance of dsRNA virus; homolog of human CAATT-binding protein 2.04871419556377 162.957878112793 282.487197875977 MAK21 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype 30690 // Noc1p-Noc2p complex // inferred from physical interaction --- 256.403259277344 183.907318115234 142.008438110352 308.571136474609 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR060W /GEN=MAK21 /DB_XREF=GI:6320265 /SEG=NC_001136:+570644,573721 /DEF=essential for 60s ribosome biogenesis; involved in nuclear export of pre-ribosomes /NOTE=Mak21p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11371346]; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 12446671]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 9786894] --- --- --- --- --- --- S0002467 // MAK21 SGDID:S0002467, Chr IV from 570645-573722, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023765 // cdna:GeneFinder chromosome:SGD1:IV:570645:573722:1 // ensembl // 11 // --- /// GENSCAN00000025143 // cdna:Genscan chromosome:SGD1:IV:570645:573722:1 // ensembl // 11 // --- /// YDR060W // cdna:known chromosome:SGD1:IV:570645:573722:1 gene:YDR060W // ensembl // 11 // --- --- No cerevisiae_gene 2.04871419556377 -1.39419824020643 1.04106525941635 -1.80554946374453 1.20346027325978 Max fold change below threshold 4 2.04871419556377 Max fold change at or above threshold 0.453796654020722 -0.522976237897527 -1.08750012067588 1.15667970455269 222.722537994385 74.2198537264248 0.333239080313893 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772854_at YOL017W.S1 Protein involved in telomeric and mating-type locus silencing, interacts with Sir2p and also interacts with the Gal11p, which is a component of the RNA pol II mediator complex 2.04870404077729 89.7479286193848 182.038215637207 ESC8 6342 // chromatin silencing // inferred from mutant phenotype 5634 // nucleus // inferred from physical interaction --- 154.182907104492 104.237106323242 75.2587509155273 209.893524169922 0.000244141003349796 0.00415039015933871 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL017W /GEN=ESC8 /DB_XREF=GI:6324556 /SEG=NC_001147:+292529,294673 /DEF=Protein involved in telomeric and mating-type locus silencing, interacts with Sir2p and also interacts with the Gal11p, which is a component of the RNA pol II mediator complex /NOTE=Esc8p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 12399377]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin silencing [goid GO:0006342] [evidence IMP] [pmid 12399377] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 0.409999996423721 --- S0005377 // ESC8 SGDID:S0005377, Chr XV from 292529-294673, Verified ORF // sgd // 11 // --- /// GENSCAN00000017454 // cdna:Genscan chromosome:SGD1:XV:292529:294673:1 // ensembl // 11 // --- /// GENEFINDER00000022928 // cdna:GeneFinder chromosome:SGD1:XV:292796:294673:1 // ensembl // 11 // --- /// YOL017W // cdna:known chromosome:SGD1:XV:292529:294673:1 gene:YOL017W // ensembl // 11 // --- --- No cerevisiae_gene 1.20936973720007 -1.47915567251423 -1.23409265614226 -2.04870404077729 1.36132810122508 Max fold change below threshold 4 2.04870404077729 Max fold change at or above threshold 0.309313664397502 -0.535358727727544 -1.02543429762957 1.25147936095961 135.893072128296 59.1303814909769 0.435124326537796 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776187_at YML107C.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery 2.04866756938446 570.713714599609 1000.88473510742 --- --- --- --- 926.855895996094 452.418884277344 689.008544921875 1074.91357421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML107C /GEN=ZDS2 /DB_XREF=GI:37362681 /SEG=NC_001145:-55265,56269 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery /NOTE=Yml107cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004575 // YML107C SGDID:S0004575, Chr XIII from 56269-55265, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018627 // cdna:Genscan chromosome:SGD1:XIII:55265:56425:-1 // ensembl // 11 // --- /// YML107C // cdna:known chromosome:SGD1:XIII:55265:56269:-1 gene:YML107C // ensembl // 11 // --- GENEFINDER00000021941 // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene -1.13562814028639 -2.04866756938446 1.50773755701698 -1.34520232416158 1.15974185292692 Max fold change below threshold 4 2.04866756938446 Max fold change at or above threshold 0.516220344695865 -1.22006079494888 -0.354221588762395 1.05806203901541 785.799224853516 273.248957721112 0.347733809195408 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769961_at YDL236W.S1 Alkaline phosphatase specific for p-nitrophenyl phosphate, involved in dephosphorylation of histone II-A and casein 2.04862022855482 885.460205078125 1406.97253417969 PHO13 6470 // protein amino acid dephosphorylation // inferred from direct assay /// 16576 // histone dephosphorylation // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3869 // 4-nitrophenylphosphatase activity // inferred from direct assay /// 4035 // alkaline phosphatase activity // inferred from direct assay 1359.60412597656 663.668212890625 1107.25219726563 1454.34094238281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL236W /GEN=PHO13 /DB_XREF=GI:6319965 /SEG=NC_001136:+32296,33234 /DEF=Alkaline phosphatase specific for p-nitrophenyl phosphate, involved in dephosphorylation of histone II-A and casein /NOTE=Pho13p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: 4-nitrophenylphosphatase activity [goid GO:0003869] [evidence IDA] [pmid 9561742]; go_function: alkaline phosphatase activity [goid GO:0004035] [evidence IDA] [pmid 9561742]; go_process: histone dephosphorylation [goid GO:0016576] [evidence IDA] [pmid 9561742]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence IDA] [pmid 9561742] --- --- --- --- --- --- S0002395 // PHO13 SGDID:S0002395, Chr IV from 32296-33234, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023853 // cdna:GeneFinder chromosome:SGD1:IV:32296:33234:1 // ensembl // 11 // --- /// GENSCAN00000024926 // cdna:Genscan chromosome:SGD1:IV:32296:33234:1 // ensembl // 11 // --- /// YDL236W // cdna:known chromosome:SGD1:IV:32296:33234:1 gene:YDL236W // ensembl // 11 // --- --- No cerevisiae_gene 1.30128964433707 -2.04862022855482 1.18842046828134 -1.22790826636797 1.06967970646471 Max fold change below threshold 4 2.04862022855482 Max fold change at or above threshold 0.603675671767241 -1.36513260022486 -0.110229955686568 0.871686884144191 1146.21636962891 353.480794949001 0.308389239863536 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773183_at YIR019C.S1 GPI-anchored cell surface glycoprotein required for diploid pseudohyphal formation and haploid invasive growth, transcriptionally regulated by the MAPK pathway (via Ste12p and Tec1p) and the cAMP pathway (via Flo8p) 2.04859881921785 162.740272521973 282.686172485352 MUC1 1403 // invasive growth (sensu Saccharomyces) // inferred from mutant phenotype /// 7124 // pseudohyphal growth // inferred from mutant phenotype /// 16337 // cell-cell adhesion // traceable author statement /// 30447 // filamentous growth // inferred from direct assay 5886 // plasma membrane // inferred from direct assay --- 265.839050292969 129.76628112793 195.714263916016 299.533294677734 0.000732421991415322 0.00585938012227416 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR019C /GEN=MUC1 /DB_XREF=GI:6322209 /SEG=NC_001141:-389569,393672 /DEF=GPI-anchored cell surface glycoprotein required for diploid pseudohyphal formation and haploid invasive growth, transcriptionally regulated by the MAPK pathway (via Ste12p and Tec1p) and the cAMP pathway (via Flo8p) /NOTE=Muc1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 11027318]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell-cell adhesion [goid GO:0016337] [evidence TAS] [pmid 11967069]; go_process: filamentous growth [goid GO:0030447] [evidence IDA] [pmid 12072450]; go_process: invasive growth (sensu Saccharomyces) [goid GO:0001403] [evidence IMP] [pmid 8710886]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 8710886] --- --- --- --- --- S0001458 // span:5-27 // numtm:1 S0001458 // MUC1 SGDID:S0001458, Chr IX from 393672-389569, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019130 // cdna:GeneFinder chromosome:SGD1:IX:389569:390949:-1 // ensembl // 11 // --- /// YIR019C // cdna:known chromosome:SGD1:IX:389569:393672:-1 gene:YIR019C // ensembl // 11 // --- --- No cerevisiae_gene -1.23404598630765 -2.04859881921785 -1.1636519322422 -1.35830186811036 1.12674678286592 Max fold change below threshold 4 2.04859881921785 Max fold change at or above threshold 0.570727826358678 -1.23006116142802 -0.357304606973741 1.01663794204308 222.713222503662 75.5628616611447 0.33928323074712 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1777414_at YGL045W.S1 Protein of unknown function, involved in the proteolytic activation of Rim101p in response to alkaline pH; has similarity to A. nidulans PalF 2.04854771048084 4178.447265625 2163.09643554688 RIM8 1403 // invasive growth (sensu Saccharomyces) // inferred from mutant phenotype /// 7126 // meiosis // inferred from mutant phenotype /// 16485 // protein processing // inferred from mutant phenotype --- --- 2229.32275390625 4566.8740234375 3790.0205078125 2096.8701171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL045W /GEN=RIM8 /DB_XREF=GI:27808707 /SEG=NC_001139:+414104,415732 /DEF=Regulator of IME2 (RIM) Involved in proteolytic processing of Rim1p /NOTE=Rim8p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: invasive growth (sensu Saccharomyces) [goid GO:0001403] [evidence IMP] [pmid 9017390]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 9017390]; go_process: protein processing [goid GO:0016485] [evidence IMP] [pmid 9017390] --- --- --- --- --- --- S0003013 // RIM8 SGDID:S0003013, Chr VII from 414106-415734, Verified ORF // sgd // 11 // --- /// GENSCAN00000019310 // cdna:Genscan chromosome:SGD1:VII:414106:415734:1 // ensembl // 11 // --- /// GENEFINDER00000021591 // cdna:GeneFinder chromosome:SGD1:VII:414106:415734:1 // ensembl // 11 // --- /// YGL045W // cdna:known chromosome:SGD1:VII:414106:415734:1 gene:YGL045W // ensembl // 11 // --- --- No cerevisiae_gene 1.15879459082852 2.04854771048084 1.11638335195426 1.70007707550267 -1.06316682928192 Max fold change below threshold 4 2.04854771048084 Max fold change at or above threshold -0.779846939391008 1.15645764642531 0.512953033534464 -0.889563740568767 3170.77185058594 1207.22291660832 0.380734714919724 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777106_at YNL274C.S1 Putative hydroxyisocaproate dehydrogenase 2.04853058317834 3160.75109863281 4356.09594726563 --- 8152 // metabolism // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 16616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from sequence similarity 4703.3046875 3048.58569335938 3272.91650390625 4008.88720703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL274C /GEN=MET2 /DB_XREF=GI:6324055 /SEG=NC_001146:-121116,122168 /DEF=Putative hydroxyisocaproate dehydrogenase /NOTE=Ynl274cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [goid GO:0016616] [evidence ISS] [pmid 9341119]; go_process: metabolism [goid GO:0008152] [evidence ISS] [pmid 9341119] --- --- --- --- --- --- S0005218 // YNL274C SGDID:S0005218, Chr XIV from 122168-121116, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019822 // cdna:Genscan chromosome:SGD1:XIV:121116:122168:-1 // ensembl // 11 // --- /// GENEFINDER00000020489 // cdna:GeneFinder chromosome:SGD1:XIV:121116:122168:-1 // ensembl // 11 // --- /// YNL274C // cdna:known chromosome:SGD1:XIV:121116:122168:-1 gene:YNL274C // ensembl // 11 // --- --- No cerevisiae_gene -2.04853058317834 -1.54278250985204 -1.22627772537992 -1.43703778629445 -1.17321951070382 Max fold change below threshold 4 2.04853058317834 Max fold change at or above threshold 1.25700697375 -0.944320974426671 -0.64588620414688 0.333200204823546 3758.42352294922 751.691266860625 0.200001746016845 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772615_at YPR145W.S1 Asparagine synthetase, isozyme of Asn2p; catalyzes the synthesis of L-asparagine from L-aspartate in the asparagine biosynthetic pathway 2.04850131703143 2165.10778808594 1066.81500244141 ASN1 6529 // asparagine biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 4066 // asparagine synthase (glutamine-hydrolyzing) activity // inferred from mutant phenotype /// 4066 // asparagine synthase (glutamine-hydrolyzing) activity // inferred from sequence similarity 1083.63781738281 2110.38208007813 2219.83349609375 1049.9921875 0.00585938012227416 0.00415039015933871 0.00292969006113708 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR145W /GEN=ASN1 /DB_XREF=GI:6325403 /SEG=NC_001148:+822614,824332 /DEF=Asparagine synthetase, isozyme of Asn2p; catalyzes the synthesis of L-asparagine from L-aspartate in the asparagine biosynthetic pathway /NOTE=Asn1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: asparagine synthase (glutamine-hydrolyzing) activity [goid GO:0004066] [evidence IMP,ISS] [pmid 8951815]; go_process: asparagine biosynthesis [goid GO:0006529] [evidence TAS] [pmid 8951815] --- --- --- --- --- --- S0006349 // ASN1 SGDID:S0006349, Chr XVI from 822616-824334, Verified ORF // sgd // 10 // --- /// GENSCAN00000017295 // cdna:Genscan chromosome:SGD1:XVI:822616:824334:1 // ensembl // 10 // --- /// GENEFINDER00000020988 // cdna:GeneFinder chromosome:SGD1:XVI:822616:824334:1 // ensembl // 10 // --- /// YPR145W // cdna:known chromosome:SGD1:XVI:822616:824334:1 gene:YPR145W // ensembl // 10 // --- --- No cerevisiae_gene 1.28366591526277 1.94749762902802 1.06401652510301 2.04850131703143 -1.0320436954516 Max fold change below threshold 4 2.04850131703143 Max fold change at or above threshold -0.837223139563526 0.777610564712109 0.949752588762722 -0.890140013911304 1615.96139526367 635.82043152603 0.393462636786744 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1775588_at YGR035W-A.S1 Identified by expression profiling and mass spectrometry 2.04849807366081 160.341758728027 205.756187438965 --- --- --- --- 216.395614624023 215.047286987305 105.63623046875 195.116760253906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR035W-A /GEN=RPL26B /DB_XREF=GI:33438795 /SEG=NC_001139:+557567,557788 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Ygr035w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028827 // YGR035W-A SGDID:S0028827, Chr VII from 557569-557790, Uncharacterized ORF // sgd // 11 // --- /// YGR035W-A // cdna:known chromosome:SGD1:VII:557569:557790:1 gene:YGR035W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.186545768435 -1.00626991233234 -1.41918686355036 -2.04849807366081 -1.10905702996722 Max fold change below threshold 4 2.04849807366081 Max fold change at or above threshold 0.634962801083867 0.609288914496241 -1.47403785267265 0.229786137092546 183.048973083496 52.5174726513197 0.286903945794683 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769481_at YGR080W.S1 Twinfilin, highly conserved actin monomer-sequestering protein involved in regulation of the cortical actin cytoskeleton, composed of two cofilin-like regions, localizes actin monomers to sites of rapid filament assembly 2.0481298965489 544.656600952148 1054.14880371094 TWF1 7121 // bipolar bud site selection // inferred from mutant phenotype /// 8154 // actin polymerization and/or depolymerization // inferred from mutant phenotype /// 8154 // actin polymerization and/or depolymerization // inferred from physical interaction /// 42989 // sequestering of actin monomers // inferred from direct assay 30479 // actin cortical patch // inferred from direct assay 3785 // actin monomer binding // inferred from direct assay 985.123291015625 480.986724853516 608.326477050781 1123.17431640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR080W /GEN=TWF1 /DB_XREF=GI:6321517 /SEG=NC_001139:+642012,643010 /DEF=Twinfilin A is a member of a conserved family of actin monomer sequestering proteins. TWF1 is comprised almost entirely of two tandem repeats, each having sequence homology with cofilin (COF1). /NOTE=Twf1p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10652251]; go_function: actin monomer binding [goid GO:0003785] [evidence IDA] [pmid 9700161]; go_process: actin polymerization and/or depolymerization [goid GO:0008154] [evidence IMP,IPI] [pmid 10652251]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251]; go_process: sequestering of actin monomers [goid GO:0042989] [evidence IDA] [pmid 9700161] --- --- --- --- --- --- S0003312 // TWF1 SGDID:S0003312, Chr VII from 642014-643012, Verified ORF // sgd // 11 // --- /// GENSCAN00000019399 // cdna:Genscan chromosome:SGD1:VII:642014:643012:1 // ensembl // 11 // --- /// GENEFINDER00000021429 // cdna:GeneFinder chromosome:SGD1:VII:642014:643012:1 // ensembl // 11 // --- /// YGR080W // cdna:known chromosome:SGD1:VII:642014:643012:1 gene:YGR080W // ensembl // 11 // --- --- No cerevisiae_gene -1.2423280359749 -2.0481298965489 -1.04001365527531 -1.61939900395522 1.14013578467757 Max fold change below threshold 4 2.0481298965489 Max fold change at or above threshold 0.610954883517585 -1.04747566119954 -0.628573028906155 1.06509380658811 799.402702331543 303.984129916095 0.380264075952574 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777090_at SPBC30D10.08.S1 --- 2.04752775779252 --- --- --- --- 0.305036425590515 0.239120483398438 0.461754351854324 0.162491172552109 0.919434010982513 0.976073980331421 0.919434010982513 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30D10.08 /GEN=mgm101 /DEF=mitochondrial nucleoid protein --- --- --- --- --- --- SPBC30D10.08 // |mgm101||mitochondrial nucleoid protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.04752775779252 -1.27565995708634 -1.73645840711493 1.5137679080799 -1.87724921175453 Max fold change below threshold 0 2.04752775779252 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780223_at SPAC29A4.17c.S1 --- 2.04733653973646 --- --- --- --- 3.66461133956909 7.50269269943237 5.41342210769653 2.89537382125854 0.303710997104645 0.030273400247097 0.171387001872063 0.0676269978284836 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29A4.17c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC29A4.17c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.21230740351345 2.04733653973646 1.76247699000436 1.47721589169483 -1.26567813546652 Max fold change below threshold 4 2.04733653973646 Max fold change at or above threshold AMPAAA No 4 0 APAA 3 1 0 No No x = 1
1769484_at YNL292W.S1 Pseudouridine synthase, catalyzes only the formation of pseudouridine-55 (Psi55), a highly conserved tRNA modification, in mitochondrial and cytoplasmic tRNAs; PUS4 overexpression leads to translational derepression of GCN4 (Gcd- phenotype) 2.04733601409207 194.850616455078 300.8837890625 PUS4 6400 // tRNA modification // inferred from direct assay 5634 // nucleus // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from mutant phenotype 4730 // pseudouridylate synthase activity // inferred from direct assay 253.148315429688 134.911697387695 254.789535522461 348.619262695313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL292W /GEN=PUS4 /DB_XREF=GI:6324037 /SEG=NC_001146:+82804,84015 /DEF=catalyzes formation of Psi55 (modified uridine) in mitochondrial and cytoplasmic tRNAs /NOTE=Pus4p; go_component: mitochondrion [goid GO:0005739] [evidence IMP] [pmid 9358157]; go_component: nucleus [goid GO:0005634] [evidence IMP] [pmid 9358157]; go_function: pseudouridylate synthase activity [goid GO:0004730] [evidence IDA] [pmid 9358157]; go_process: tRNA modification [goid GO:0006400] [evidence IDA] [pmid 9358157] --- --- --- --- --- --- S0005236 // PUS4 SGDID:S0005236, Chr XIV from 82804-84015, Verified ORF // sgd // 11 // --- /// GENSCAN00000019806 // cdna:Genscan chromosome:SGD1:XIV:82804:84015:1 // ensembl // 11 // --- /// GENEFINDER00000020642 // cdna:GeneFinder chromosome:SGD1:XIV:82804:84015:1 // ensembl // 11 // --- /// YNL292W // cdna:known chromosome:SGD1:XIV:82804:84015:1 gene:YNL292W // ensembl // 11 // --- --- No cerevisiae_gene 2.04733601409207 -1.87640004781955 1.25866203489165 1.00648323529227 1.37713443640174 Max fold change below threshold 4 2.04733601409207 Max fold change at or above threshold 0.0603332729181807 -1.2904430861169 0.0790831436266305 1.15102666957209 247.867202758789 87.5323418648325 0.353142089355058 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771117_at YGR197C.S1 Protein involved in nitrosoguanidine (MNNG) resistance; expression is regulated by transcription factors involved in multidrug resistance 2.04711470410302 1456.75524902344 1711.55456542969 SNG1 42493 // response to drug // inferred from mutant phenotype 16020 // membrane // inferred from sequence similarity --- 1714.41845703125 1504.19750976563 1409.31298828125 1708.69067382813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR197C /GEN=SNG1 /DB_XREF=GI:6321636 /SEG=NC_001139:-892500,894143 /DEF=Involved in nitrosoguanidine resistance /NOTE=Sng1p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 7753113]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to drug [goid GO:0042493] [evidence IMP] [pmid 7753113] --- --- --- --- --- S0003429 // span:109-131,320-342,363-385,400-422,429-451,486-508 // numtm:6 S0003429 // SNG1 SGDID:S0003429, Chr VII from 894145-892502, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021481 // cdna:GeneFinder chromosome:SGD1:VII:892502:894145:-1 // ensembl // 11 // --- /// YGR197C // cdna:known chromosome:SGD1:VII:892502:894145:-1 gene:YGR197C // ensembl // 11 // --- --- No cerevisiae_gene -2.04711470410302 -1.1397562127984 1.84526629468755 -1.21649234150754 -1.00335214751907 Max fold change below threshold 4 2.04711470410302 Max fold change at or above threshold 0.856202921001137 -0.52554807054122 -1.14920990514135 0.818555054681434 1584.15490722656 152.140978043352 0.0960392050987679 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773314_at YBL088C.S1 Protein kinase, primarily involved in telomere length regulation; contributes to cell cycle checkpoint control in response to DNA damage; functionally redundant with Mec1p; homolog of human ataxia telangiectasia (ATM) gene 2.04654926657252 123.109191894531 265.292877197266 TEL1 6974 // response to DNA damage stimulus // traceable author statement /// 7004 // telomerase-dependent telomere maintenance // inferred from mutant phenotype /// 16310 // phosphorylation // traceable author statement 5634 // nucleus // traceable author statement /// 5634 // nucleus // inferred from curator /// 5739 // mitochondrion // inferred from direct assay 4672 // protein kinase activity // inferred from direct assay 237.595794677734 116.095809936523 130.122573852539 292.989959716797 0.000244141003349796 0.00122069998178631 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL088C /GEN=TEL1 /DB_XREF=GI:6319383 /SEG=NC_001134:-51016,59379 /DEF=Protein kinase, primarily involved in telomere length regulation; contributes to cell cycle checkpoint control in response to DNA damage; functionally redundant with Mec1p; homolog of human ataxia telangiectasia (ATM) gene /NOTE=Tel1p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 7569949]; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 8982452]; go_function: protein kinase activity [goid GO:0004672] [evidence IDA] [pmid 11095737]; go_process: phosphorylation [goid GO:0016310] [evidence TAS] [pmid 12923051]; go_process: response to DNA damage stimulus [goid GO:0006974] [evidence TAS] [pmid 7569949]; go_process: telomerase-dependent telomere maintenance [goid GO:0007004] [evidence IMP] [pmid 3513174] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 4.30000019073486 --- S0000184 // TEL1 SGDID:S0000184, Chr II from 59379-51016, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021070 // cdna:Genscan chromosome:SGD1:II:51016:59379:-1 // ensembl // 11 // --- /// GENEFINDER00000022340 // cdna:GeneFinder chromosome:SGD1:II:51016:57057:-1 // ensembl // 11 // --- /// YBL088C // cdna:known chromosome:SGD1:II:51016:59379:-1 gene:YBL088C // ensembl // 11 // --- --- No cerevisiae_gene -1.48873482458478 -2.04654926657252 1.32854603900899 -1.82593832602012 1.23314455171312 Max fold change below threshold 4 2.04654926657252 Max fold change at or above threshold 0.508491625781058 -0.915222310780301 -0.750859333166577 1.15759001816582 194.201034545898 85.3401667435139 0.4394423899083 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775412_at YDR078C.S1 Protein of unassigned function involved in mutation suppression, important for error-free repair of spontaneous and induced DNA lesions to protect the genome from mutation; associates with Shu1p, Psy3p, and Csm2p 2.04651708103888 253.491668701172 442.817932128906 SHU2 45021 // error-free DNA repair // inferred from mutant phenotype --- --- 421.896728515625 300.829803466797 206.153533935547 463.739135742188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR078C /GEN=SHU2 /DB_XREF=GI:6320283 /SEG=NC_001136:-602193,602864 /DEF=Suppressor of hydroxy-urea sensitivity /NOTE=Shu2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002485 // SHU2 SGDID:S0002485, Chr IV from 602865-602194, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDR078C // cdna:known chromosome:SGD1:IV:602194:602865:-1 gene:YDR078C // ensembl // 11 // --- --- No cerevisiae_gene -1.42414348990104 -1.40244325413785 -1.04251364967237 -2.04651708103888 1.09917689424561 Max fold change below threshold 4 2.04651708103888 Max fold change at or above threshold 0.629242344721617 -0.4038257855563 -1.21170156754126 0.986285008375942 348.154800415039 117.191617377896 0.3366077883694 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774660_at YLR023C.S1 Membrane protein involved in zinc metabolism, member of the four-protein IZH family, expression induced by zinc deficiency; deletion reduces sensitivity to elevated zinc and shortens lag phase, overexpression reduces Zap1p activity 2.04650371807322 1375.71038818359 1145.82415771484 IZH3 6629 // lipid metabolism // traceable author statement /// 6882 // zinc ion homeostasis // inferred from mutant phenotype /// 6882 // zinc ion homeostasis // inferred from sequence similarity 5783 // endoplasmic reticulum // inferred from direct assay /// 16020 // membrane // traceable author statement /// 16020 // membrane // inferred from sequence similarity 46872 // metal ion binding // inferred from sequence similarity 1072.39514160156 1113.37585449219 1638.044921875 1219.25317382813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR023C /GEN=IZH3 /DB_XREF=GI:6323051 /SEG=NC_001144:-185497,187128 /DEF=Membrane protein involved in zinc metabolism, member of the four-protein IZH family, expression induced by zinc deficiency; deletion reduces sensitivity to elevated zinc and shortens lag phase, overexpression reduces Zap1p activity /NOTE=Izh3p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_component: membrane [goid GO:0016020] [evidence ISS,TAS] [pmid 15060275]; go_function: metal ion binding [goid GO:0046872] [evidence ISS] [pmid 15060275]; go_process: lipid metabolism [goid GO:0006629] [evidence TAS] [pmid 15060275]; go_process: zinc ion homeostasis [goid GO:0006882] [evidence IMP,ISS] [pmid 15060275] --- --- --- --- --- S0004013 // span:259-281,296-318,331-353,358-380,392-414,424-446,510-532 // numtm:7 S0004013 // IZH3 SGDID:S0004013, Chr XII from 187128-185497, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017833 // cdna:Genscan chromosome:SGD1:XII:185497:187080:-1 // ensembl // 11 // --- /// YLR023C // cdna:known chromosome:SGD1:XII:185497:187128:-1 gene:YLR023C // ensembl // 11 // --- --- No cerevisiae_gene 2.04650371807322 1.03821419111376 1.17162032227209 1.52746395272611 1.13694395519849 Max fold change below threshold 4 2.04650371807322 Max fold change at or above threshold -0.727256497719788 -0.569040473312805 1.45657226290726 -0.160275291874667 1260.76727294922 259.017460742215 0.205444308636213 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770872_at SPCC777.15.S1 --- 2.04620729832605 --- --- --- --- 6.18931722640991 3.02477526664734 4.6416449546814 4.39918327331543 0.366210997104645 0.567627012729645 0.194580003619194 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC777.15 /DEF=dihydrouridine synthase (predicted) --- --- --- --- --- --- SPCC777.15 // |||dihydrouridine synthase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.92028075287491 -2.04620729832605 -1.28116616674959 -1.33343185160416 -1.406924158844 Max fold change below threshold 4 2.04620729832605 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769511_at YNR038W.S1 Essential protein involved in ribosome biogenesis; putative ATP-dependent RNA helicase of the DEAD-box protein family 2.04549751870337 810.917266845703 1053.97805786133 DBP6 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 6365 // 35S primary transcript processing // inferred from mutant phenotype 5730 // nucleolus // inferred from direct assay /// 30687 // nucleolar preribosome, large subunit precursor // inferred from direct assay 4004 // ATP-dependent RNA helicase activity // traceable author statement 989.888610839844 790.351501464844 831.483032226563 1118.06750488281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR038W /GEN=DBP6 /DB_XREF=GI:6324366 /SEG=NC_001146:+695594,697483 /DEF=Dead Box Protein 6 /NOTE=Dbp6p; go_component: nucleolar preribosome, large subunit precursor [goid GO:0030687] [evidence IDA] [pmid 15126390]; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 9528757]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence IMP] [pmid 9528757]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 9528757] --- --- --- --- --- --- S0005321 // DBP6 SGDID:S0005321, Chr XIV from 695595-697484, Verified ORF // sgd // 11 // --- /// GENSCAN00000020067 // cdna:Genscan chromosome:SGD1:XIV:695595:697484:1 // ensembl // 11 // --- /// GENEFINDER00000020457 // cdna:GeneFinder chromosome:SGD1:XIV:695595:697484:1 // ensembl // 11 // --- /// YNR038W // cdna:known chromosome:SGD1:XIV:695595:697484:1 gene:YNR038W // ensembl // 11 // --- --- No cerevisiae_gene 2.04549751870337 -1.25246628747485 -1.28708231101498 -1.19050969469467 1.12948819962098 Max fold change below threshold 4 2.04549751870337 Max fold change at or above threshold 0.381138826201541 -0.942852884501799 -0.669932193470289 1.23164625177055 932.447662353516 150.708730093937 0.161627012623471 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776805_at YHR106W.S1 Mitochondrial thioredoxin reductase involved in protection against oxidative stress, required with Glr1p to maintain the redox state of Trx3p, contains active-site motif (CAVC) present in prokaryotic thioredoxin reductases, binds NADPH and FAD 2.0450885668277 2014.90728759766 2388.2548828125 TRR2 6979 // response to oxidative stress // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 4791 // thioredoxin-disulfide reductase activity // inferred from direct assay 2402.79907226563 1836.37976074219 2193.43481445313 2373.71069335938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR106W /GEN=TRR2 /DB_XREF=GI:6321898 /SEG=NC_001140:+325600,326628 /DEF=mitochondrial thioredoxin reductase /NOTE=Trr2p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 10037727]; go_function: thioredoxin-disulfide reductase activity [goid GO:0004791] [evidence IDA] [pmid 10037727]; go_process: response to oxidative stress [goid GO:0006979] [evidence IMP] [pmid 10037727] --- --- --- --- --- --- S0001148 // TRR2 SGDID:S0001148, Chr VIII from 325600-326628, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020182 // cdna:GeneFinder chromosome:SGD1:VIII:325669:326628:1 // ensembl // 11 // --- /// GENSCAN00000016643 // cdna:Genscan chromosome:SGD1:VIII:325747:326628:1 // ensembl // 11 // --- /// YHR106W // cdna:known chromosome:SGD1:VIII:325600:326628:1 gene:YHR106W // ensembl // 11 // --- --- No cerevisiae_gene -2.0450885668277 -1.30844345142124 1.19503691627552 -1.09545041249138 -1.01225439097849 Max fold change below threshold 4 2.0450885668277 Max fold change at or above threshold 0.77247751566428 -1.40201090349597 -0.0312736007566949 0.660806988588389 2201.58108520508 260.483940283378 0.118316759729571 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775555_at YDR484W.S1 Component of the GARP (Golgi-associated retrograde protein) complex, Vps51p-Vps52p-Vps53p-Vps54p, which is required for the recycling of proteins from endosomes to the late Golgi; involved in localization of actin and chitin 2.04501340624397 223.617027282715 422.706207275391 VPS52 6896 // Golgi to vacuole transport // inferred from mutant phenotype /// 30029 // actin filament-based process // inferred from genetic interaction /// 42147 // retrograde transport, endosome to Golgi // inferred from direct assay 938 // GARP complex // inferred from physical interaction /// 5794 // Golgi apparatus // traceable author statement /// 5794 // Golgi apparatus // inferred from direct assay 5515 // protein binding // inferred from physical interaction 412.323425292969 245.610229492188 201.623825073242 433.088989257813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR484W /GEN=VPS52 /DB_XREF=GI:6320692 /SEG=NC_001136:+1422751,1424676 /DEF=May interact with actin as a component or controller of the assembly or stability of the actin cytoskeleton /NOTE=Vps52p; go_component: GARP complex [goid GO:0000938] [evidence IPI] [pmid 10637310]; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 10637310]; go_component: Golgi apparatus [goid GO:0005794] [evidence TAS] [pmid 11689439]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12377769]; go_process: Golgi to vacuole transport [goid GO:0006896] [evidence IMP] [pmid 10637310]; go_process: actin filament-based process [goid GO:0030029] [evidence IGI] [pmid 9153752]; go_process: retrograde transport, endosome to Golgi [goid GO:0042147] [evidence IDA] [pmid 12686613] --- --- --- --- --- --- S0002892 // VPS52 SGDID:S0002892, Chr IV from 1422753-1424678, Verified ORF // sgd // 11 // --- /// GENSCAN00000025479 // cdna:Genscan chromosome:SGD1:IV:1423116:1424678:1 // ensembl // 11 // --- /// YDR484W // cdna:known chromosome:SGD1:IV:1422753:1424678:1 gene:YDR484W // ensembl // 11 // --- --- No cerevisiae_gene -1.15806444783543 -1.67877138564412 1.21665805394029 -2.04501340624397 1.05036231921601 Max fold change below threshold 4 2.04501340624397 Max fold change at or above threshold 0.764373482144985 -0.664838742598965 -1.04192891003365 0.94239417048763 323.161617279053 116.646914233223 0.360955348643701 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771416_at YOR389W.S1 Hypothetical protein /// Hypothetical protein /// Hypothetical protein 2.04483520379604 167.723564147949 128.985778808594 --- --- 5624 // membrane fraction // inferred from direct assay --- 123.911315917969 147.442718505859 188.004409790039 134.060241699219 0.00805663969367743 0.000244141003349796 0.00415039015933871 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR389W /GEN=FDH1 /DB_XREF=GI:6324965 /SEG=NC_001147:+1074209,1076083 /DEF=Hypothetical ORF /NOTE=Yor389wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005916 // span:7-24 // numtm:1 /// S0006198 // span:7-24 // numtm:1 S0005916 // YOR389W SGDID:S0005916, Chr XV from 1074209-1076083, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022902 // cdna:GeneFinder chromosome:SGD1:XV:1074209:1076083:1 // ensembl // 11 // --- /// GENSCAN00000017834 // cdna:Genscan chromosome:SGD1:XV:1074734:1076083:1 // ensembl // 11 // --- /// YOR389W // cdna:known chromosome:SGD1:XV:1074209:1076083:1 gene:YOR389W // ensembl // 11 // --- --- No cerevisiae_gene -2.04483520379604 1.18990519480456 -1.15248509482403 1.51724972329808 1.08190475346068 Max fold change below threshold 4 2.04483520379604 Max fold change at or above threshold -0.868786888083711 -0.0324134214316847 1.40926529813926 -0.508064988623867 148.354671478271 28.1350419712452 0.189647159006826 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1778040_at YKR076W.S1 Non-essential protein of unknown function; similar to Ygr154cp 2.04478997169301 1474.67376708984 2316.9169921875 ECM4 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 2313.72802734375 1296.5712890625 1652.77624511719 2320.10595703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR076W /GEN=ECM4 /DB_XREF=GI:6322929 /SEG=NC_001143:+581925,583037 /DEF=Non-essential protein of unknown function; similar to Ygr154cp /NOTE=Ecm4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584] --- --- --- --- --- --- S0001784 // ECM4 SGDID:S0001784, Chr XI from 581925-583037, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023099 // cdna:GeneFinder chromosome:SGD1:XI:581925:583037:1 // ensembl // 10 // --- /// GENSCAN00000018478 // cdna:Genscan chromosome:SGD1:XI:582174:583037:1 // ensembl // 10 // --- /// YKR076W // cdna:known chromosome:SGD1:XI:581925:583037:1 gene:YKR076W // ensembl // 10 // --- --- No cerevisiae_gene -2.04478997169301 -1.78449734840011 1.37133374063393 -1.39990397017093 1.00275655980829 Max fold change below threshold 4 2.04478997169301 Max fold change at or above threshold 0.823424039286733 -1.18061013852246 -0.478803937597276 0.835990036833002 1895.79537963867 507.554586415889 0.2677264602853 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774367_at YJL039C.S1 Essential structural subunit of the nuclear pore complex (NPC), localizes to the nuclear periphery of nuclear pores, homologous to human p205 2.04402497767895 215.755584716797 438.68359375 NUP192 6999 // nuclear pore organization and biogenesis // inferred from mutant phenotype /// 6999 // nuclear pore organization and biogenesis // inferred from physical interaction 5643 // nuclear pore // traceable author statement 17056 // structural constituent of nuclear pore // inferred from mutant phenotype /// 17056 // structural constituent of nuclear pore // inferred from physical interaction 398.756256103516 195.083847045898 236.427322387695 478.610931396484 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL039C /GEN=NUP192 /DB_XREF=GI:6322421 /SEG=NC_001142:-368664,373715 /DEF=Essential structural subunit of the nuclear pore complex (NPC), localizes to the nuclear periphery of nuclear pores, homologous to human p205 /NOTE=Nup192p; go_component: nuclear pore [goid GO:0005643] [evidence TAS] [pmid 11343909]; go_function: structural constituent of nuclear pore [goid GO:0017056] [evidence IMP,IPI] [pmid 10428845]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence IMP,IPI] [pmid 10428845] --- --- --- hanks // 2.1.12 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; CMK2 // 0.053 --- --- S0003576 // NUP192 SGDID:S0003576, Chr X from 373715-368664, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024109 // cdna:Genscan chromosome:SGD1:X:368664:372818:-1 // ensembl // 11 // --- /// GENEFINDER00000024365 // cdna:GeneFinder chromosome:SGD1:X:368664:372818:-1 // ensembl // 11 // --- /// YJL039C // cdna:known chromosome:SGD1:X:368664:373715:-1 gene:YJL039C // ensembl // 11 // --- --- No cerevisiae_gene 1.18650933746708 -2.04402497767895 1.26620867420327 -1.68659126228073 1.20025936664487 Max fold change below threshold 4 2.04402497767895 Max fold change at or above threshold 0.534491505400526 -0.987261985343 -0.678361146923348 1.13113162686582 327.219589233398 133.8406057857 0.409023818223287 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769674_at YPL119C.S1 Putative ATP-dependent RNA helicase of the DEAD-box protein family; mutants show reduced stability of the 40S ribosomal subunit scanning through 5' untranslated regions of mRNAs 2.04396583978521 599.356826782227 738.147705078125 DBP1 6397 // mRNA processing // inferred from genetic interaction /// 6397 // mRNA processing // inferred from sequence similarity /// 6413 // translational initiation // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 3724 // RNA helicase activity // inferred from sequence similarity 705.373291015625 393.497833251953 805.2158203125 770.922119140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL119C /GEN=DBP1 /DB_XREF=GI:6325138 /SEG=NC_001148:-324410,326263 /DEF=putative ATP-dependent RNA helicase; Dead box protein /NOTE=Dbp1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: RNA helicase activity [goid GO:0003724] [evidence ISS] [pmid 8144024]; go_process: mRNA processing [goid GO:0006397] [evidence IGI,ISS] [pmid 1857205] --- --- --- --- --- --- S0006040 // DBP1 SGDID:S0006040, Chr XVI from 326263-324410, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017099 // cdna:Genscan chromosome:SGD1:XVI:324410:326263:-1 // ensembl // 11 // --- /// GENEFINDER00000020933 // cdna:GeneFinder chromosome:SGD1:XVI:324410:326263:-1 // ensembl // 11 // --- /// YPL119C // cdna:known chromosome:SGD1:XVI:324410:326263:-1 gene:YPL119C // ensembl // 11 // --- --- No cerevisiae_gene -1.1587290876611 -1.79257223651339 2.04396583978521 1.14154566180571 1.0929278567248 Max fold change below threshold 4 2.04396583978521 Max fold change at or above threshold 0.194668723953372 -1.46318758273289 0.725408039118597 0.543110819660922 668.752265930176 188.119716109203 0.281299556940634 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770395_at YLR105C.S1 Subunit of the tRNA splicing endonuclease, which is composed of Sen2p, Sen15p, Sen34p, and Sen54p; Sen2p contains the active site for tRNA 5' splice site cleavage and has similarity to Sen34p and to Archaeal tRNA splicing endonuclease 2.04362695213627 243.400886535645 497.431274414063 SEN2 6388 // tRNA splicing // traceable author statement 214 // tRNA-intron endonuclease complex // traceable author statement /// 5637 // nuclear inner membrane // traceable author statement /// 5741 // mitochondrial outer membrane // inferred from direct assay /// 5741 // mitochondrial outer membrane // inferred from mutant phenotype /// 5741 // mitochondrial outer membrane // inferred from physical interaction 213 // tRNA-intron endonuclease activity // traceable author statement 451.21337890625 220.790481567383 266.011291503906 543.649169921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR105C /GEN=SEN2 /DB_XREF=GI:6323134 /SEG=NC_001144:-347048,348181 /DEF=Subunit of the tRNA splicing endonuclease, which is composed of Sen2p, Sen15p, Sen34p, and Sen54p; Sen2p contains the active site for tRNA 5' splice site cleavage and has similarity to Sen34p and to Archaeal tRNA splicing endonuclease /NOTE=Sen2p; go_component: mitochondrial outer membrane [goid GO:0005741] [evidence IDA,IMP,IPI] [pmid 12925762]; go_component: nuclear inner membrane [goid GO:0005637] [evidence TAS] [pmid 9582290]; go_component: tRNA-intron endonuclease complex [goid GO:0000214] [evidence TAS] [pmid 9582290]; go_function: tRNA-intron endonuclease activity [goid GO:0000213] [evidence TAS] [pmid 9582290]; go_process: tRNA splicing [goid GO:0006388] [evidence TAS] [pmid 9582290] --- --- --- --- --- --- S0004095 // SEN2 SGDID:S0004095, Chr XII from 348181-347048, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017901 // cdna:Genscan chromosome:SGD1:XII:347048:348181:-1 // ensembl // 11 // --- /// GENEFINDER00000024601 // cdna:GeneFinder chromosome:SGD1:XII:347048:348181:-1 // ensembl // 11 // --- /// YLR105C // cdna:known chromosome:SGD1:XII:347048:348181:-1 gene:YLR105C // ensembl // 11 // --- --- No cerevisiae_gene -1.3627828592728 -2.04362695213627 1.5952362336798 -1.69621889490215 1.20486048361352 Max fold change below threshold 4 2.04362695213627 Max fold change at or above threshold 0.529600779963958 -0.980748557468833 -0.684340426529661 1.13548820403453 370.416080474854 152.562649996277 0.411868323320898 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777217_at YLR022C.S1 Essential protein involved in RNA metabolism, one of two yeast homologs (with Yhr087wp) of the human protein SBDS responsible for autosomal recessive Shwachman-Bodian-Diamond Syndrome, also conserved in Archaea 2.0435174217916 206.379859924316 415.225082397461 --- 6365 // 35S primary transcript processing // inferred from mutant phenotype /// 16070 // RNA metabolism // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 388.116424560547 222.834045410156 189.925674438477 442.333740234375 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR022C /GEN=PSR2 /DB_XREF=GI:6323050 /SEG=NC_001144:-184173,184925 /DEF=Protein required for cell viability /NOTE=Ylr022cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14690591]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence IMP] [pmid 12837249] --- --- --- --- --- --- S0004012 // YLR022C SGDID:S0004012, Chr XII from 184925-184173, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017822 // cdna:Genscan chromosome:SGD1:XII:184173:184925:-1 // ensembl // 11 // --- /// YLR022C // cdna:known chromosome:SGD1:XII:184173:184925:-1 gene:YLR022C // ensembl // 11 // --- --- No cerevisiae_gene 1.39001709336655 -1.74172857583843 1.18094011393009 -2.0435174217916 1.13969343280233 Max fold change below threshold 4 2.0435174217916 Max fold change at or above threshold 0.626909509078083 -0.713302582221947 -0.980144074387918 1.06653714753178 310.802471160889 123.32553946 0.396797165091263 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772611_at YLR404W.S1 Hypothetical protein 2.04323097482102 105.373115539551 244.889289855957 --- --- 16021 // integral to membrane // inferred from sequence similarity --- 212.353042602539 106.816207885742 103.930023193359 277.425537109375 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR404W /GEN=SFP1 /DB_XREF=GI:6323436 /SEG=NC_001144:+928741,929598 /DEF=Hypothetical ORF /NOTE=Ylr404wp; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 12524434]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004396 // span:13-35,252-274 // numtm:2 S0004396 // YLR404W SGDID:S0004396, Chr XII from 928741-929598, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000024873 // cdna:GeneFinder chromosome:SGD1:XII:929029:929598:1 // ensembl // 9 // --- /// YLR404W // cdna:known chromosome:SGD1:XII:928741:929598:1 gene:YLR404W // ensembl // 11 // --- --- No cerevisiae_gene 1.48055931660574 -1.9880226681487 1.83835817063573 -2.04323097482102 1.30643542333713 Max fold change below threshold 4 2.04323097482102 Max fold change at or above threshold 0.438804368331615 -0.805358311753111 -0.839383240506474 1.20593718392797 175.131202697754 84.8255910630674 0.484354528241673 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778651_at YMR246W.S1 Long chain fatty acyl-CoA synthetase 2.04297967953428 2560.79650878906 1342.11462402344 FAA4 6499 // N-terminal protein myristoylation // inferred from genetic interaction /// 6499 // N-terminal protein myristoylation // inferred from mutant phenotype /// 6629 // lipid metabolism // inferred from genetic interaction /// 6629 // lipid metabolism // inferred from mutant phenotype /// 6869 // lipid transport // inferred from genetic interaction /// 6869 // lipid transport // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay /// 5811 // lipid particle // inferred from direct assay 4467 // long-chain-fatty-acid-CoA ligase activity // inferred from direct assay 1301.21447753906 2463.23828125 2658.35473632813 1383.01477050781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR246W /GEN=FAA4 /DB_XREF=GI:6323903 /SEG=NC_001145:+759806,761890 /DEF=Long chain fatty acyl-CoA synthetase /NOTE=Faa4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 10515935]; go_function: long-chain-fatty-acid-CoA ligase activity [goid GO:0004467] [evidence IDA] [pmid 7650027]; go_process: N-terminal protein myristoylation [goid GO:0006499] [evidence IGI,IMP] [pmid 7962057]; go_process: lipid metabolism [goid GO:0006629] [evidence IGI,IMP] [pmid 7962057]; go_process: lipid transport [goid GO:0006869] [evidence IGI,IPI] [pmid 12601005] --- --- --- ec // AC2L_HUMAN // (Q9NUB1) Acetyl-coenzyme A synthetase 2-like, mitochondrial precursor (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acetyl-CoA synthetase 2) // 2.0E-89 --- --- S0004860 // FAA4 SGDID:S0004860, Chr XIII from 759806-761890, Verified ORF // sgd // 11 // --- /// GENSCAN00000018923 // cdna:Genscan chromosome:SGD1:XIII:759806:761890:1 // ensembl // 11 // --- /// GENEFINDER00000021881 // cdna:GeneFinder chromosome:SGD1:XIII:759806:761890:1 // ensembl // 11 // --- /// YMR246W // cdna:known chromosome:SGD1:XIII:759806:761890:1 gene:YMR246W // ensembl // 11 // --- --- No cerevisiae_gene 2.02297808284384 1.89303018354717 1.15025438693513 2.04297967953428 1.06286457335109 Max fold change below threshold 4 2.04297967953428 Max fold change at or above threshold -0.91726920286613 0.721951489874665 0.997194500935956 -0.801876787944491 1951.45556640625 708.887954414497 0.363261130111185 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778572_at SPAC1093.06c.S1 --- 2.0426964304467 --- --- --- --- 4.31816053390503 8.56960105895996 7.4298849105835 5.51582384109497 0.212646484375 0.14453125 0.194580003619194 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1093.06c /GEN=dhc1 /DEF=dynein heavy chain (PMID 10855500) --- --- --- --- --- --- SPAC1093.06c // |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.48053973630196 1.98454897442413 2.0426964304467 1.72061340754843 1.27735497506084 Max fold change below threshold 4 2.0426964304467 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770567_at YLR265C.S1 Protein involved in regulation of nonhomologous end joining; repressed by MAT heterozygosity; associates with Lif1p and regulates its cellular distribution 2.04218829725558 22.6519422531128 21.7516651153564 NEJ1 6281 // DNA repair // inferred from direct assay /// 6302 // double-strand break repair // inferred from direct assay 5634 // nucleus // inferred from direct assay --- 19.7260818481445 30.6229381561279 14.6809463500977 23.7772483825684 0.00415039015933871 0.00805663969367743 0.0805663987994194 0.00122069998178631 P P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR265C /GEN=NEJ1 /DB_XREF=GI:6323295 /SEG=NC_001144:-674429,675457 /DEF=Nonhomologous End-Joining regulator 1; Repressed by MAT heterozygosity; Interacts with Lif1p in a yeast two-hybrid assay /NOTE=Nej1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11676923]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA repair [goid GO:0006281] [evidence IDA] [pmid 11676923]; go_process: double-strand break repair [goid GO:0006302] [evidence IDA] [pmid 11676923] --- --- --- --- --- --- S0004255 // NEJ1 SGDID:S0004255, Chr XII from 675457-674429, reverse complement, Verified ORF // sgd // 11 // --- /// YLR265C // cdna:known chromosome:SGD1:XII:674429:675457:-1 gene:YLR265C // ensembl // 11 // --- --- No cerevisiae_gene 1.0390459506091 1.55240855187916 -2.04218829725558 -1.34365192663573 1.205371069917 Max fold change below threshold 4 2.04218829725558 Max fold change at or above threshold -0.367577844687942 1.25031108660191 -1.11664424039396 0.233910998479996 22.2018036842346 6.73523138531886 0.303364153701688 PPPPAP Called_P_>2EXP 2 0 PPAP 1 3 0 Yes Yes 2 < x = 3
1777623_at YLR138W.S1 Na+/H+ antiporter involved in sodium and potassium efflux through the plasma membrane; required for alkali cation tolerance at acidic pH 2.0418684370983 412.584121704102 612.882476806641 NHA1 30004 // monovalent inorganic cation homeostasis // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay 15385 // sodium:hydrogen antiporter activity // inferred from direct assay /// 15491 // cation:cation antiporter activity // inferred from sequence similarity /// 15491 // cation:cation antiporter activity // inferred from mutant phenotype 619.720031738281 458.722442626953 366.44580078125 606.044921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR138W /GEN=NHA1 /DB_XREF=GI:6323167 /SEG=NC_001144:+418438,421395 /DEF=Putative Na+/H+ antiporter /NOTE=Nha1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 9802016]; go_function: cation:cation antiporter activity [goid GO:0015491] [evidence ISS] [pmid 8654575]; go_function: cation:cation antiporter activity [goid GO:0015491] [evidence IMP] [pmid 9802016]; go_process: monovalent inorganic cation homeostasis [goid GO:0030004] [evidence IMP] [pmid 9802016] --- --- --- --- --- S0004128 // span:12-33,38-60,103-125,204-226,246-265,293-315,327-349,364-381,412-434 // numtm:9 S0004128 // NHA1 SGDID:S0004128, Chr XII from 418438-421395, Verified ORF // sgd // 11 // --- /// GENSCAN00000017927 // cdna:Genscan chromosome:SGD1:XII:418768:421395:1 // ensembl // 11 // --- /// GENEFINDER00000024863 // cdna:GeneFinder chromosome:SGD1:XII:418768:421395:1 // ensembl // 11 // --- /// YLR138W // cdna:known chromosome:SGD1:XII:418438:421395:1 gene:YLR138W // ensembl // 11 // --- --- No cerevisiae_gene -2.0418684370983 -1.35096950606852 -1.23667324862052 -1.69116423333835 -1.02256451521939 Max fold change below threshold 4 2.0418684370983 Max fold change at or above threshold 0.878728905655164 -0.44361482809253 -1.20152331473185 0.766409237169216 512.733299255371 121.751693604688 0.237456185860182 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772910_at YLL052C.S1 Water channel that mediates the transport of water across cell membranes and may be involved in freeze tolerance; disrupted by a stop codon in many S. cerevisiae strains /// Hypothetical protein; maybe continuous with YLL052C (AQY2) in some strain backgrounds including Sigma1278b; functions as an aquaporin in these strains. 2.04151482195187 572.920913696289 789.317199707031 AQY2 6833 // water transport // inferred from sequence similarity 5789 // endoplasmic reticulum membrane // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 15250 // water channel activity // inferred from sequence similarity 756.578552246094 370.596649169922 775.245178222656 822.055847167969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL052C /GEN=AQY2 /DB_XREF=GI:6322976 /SEG=NC_001144:-35911,36360 /DEF=Water channel that mediates the transport of water across cell membranes and may be involved in freeze tolerance; disrupted by a stop codon in many S. cerevisiae strains /NOTE=Aqy2p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 11168368]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 11168368]; go_function: water channel activity [goid GO:0015250] [evidence ISS] [pmid 10870101]; go_process: water transport [goid GO:0006833] [evidence ISS] [pmid 10870101] --- --- --- --- --- S0003975 // span:48-70,90-112 // numtm:2 /// S0003976 // span:10-32,39-58,68-90,111-133 // numtm:4 S0003975 // AQY2 SGDID:S0003975, Chr XII from 36360-35911, reverse complement, Verified ORF // sgd // 11 // --- /// YLL052C // cdna:known chromosome:SGD1:XII:35911:36360:-1 gene:YLL052C // ensembl // 11 // --- GENEFINDER00000024841 // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene 1.97583436237953 -2.04151482195187 1.42962457474449 1.02467242287155 1.08654394805072 Max fold change below threshold 4 2.04151482195187 Max fold change at or above threshold 0.361328530247388 -1.48689842560974 0.450711377033283 0.674858518329068 681.11905670166 208.839018310481 0.306611621354115 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772068_at YJR138W.S1 Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to the vacuolar membrane 2.04141104961847 372.436172485352 764.717071533203 IML1 --- 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay --- 701.557434082031 343.662994384766 401.209350585938 827.876708984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR138W /GEN=IML1 /DB_XREF=GI:6322598 /SEG=NC_001142:+684482,689236 /DEF=Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to the vacuolar membrane /NOTE=Iml1p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.1.Myb // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb // 2.79999995231628 --- S0003899 // IML1 SGDID:S0003899, Chr X from 684482-689236, Verified ORF // sgd // 11 // --- /// GENSCAN00000024242 // cdna:Genscan chromosome:SGD1:X:684482:689236:1 // ensembl // 11 // --- /// GENEFINDER00000024527 // cdna:GeneFinder chromosome:SGD1:X:685874:689236:1 // ensembl // 11 // --- /// YJR138W // cdna:known chromosome:SGD1:X:684482:689236:1 gene:YJR138W // ensembl // 11 // --- --- No cerevisiae_gene -1.79578991524758 -2.04141104961847 -1.14913878452382 -1.74860688829275 1.18005550047036 Max fold change below threshold 4 2.04141104961847 Max fold change at or above threshold 0.569595207966879 -0.963369996802847 -0.71688234029636 1.11065712913233 568.576622009277 233.465468481411 0.410613907508848 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771703_at YDL182W.S1 Homocitrate synthase isozyme, catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, which is the first step in the lysine biosynthesis pathway; highly similar to the other isozyme, Lys21p 2.04130754834219 1283.62963867188 1063.94360351563 LYS20 19878 // lysine biosynthesis, aminoadipic pathway // traceable author statement 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4410 // homocitrate synthase activity // inferred from genetic interaction /// 4410 // homocitrate synthase activity // inferred from sequence similarity /// 4410 // homocitrate synthase activity // inferred from expression pattern /// 4410 // homocitrate synthase activity // inferred from mutant phenotype 1046.716796875 1200.46606445313 1366.79321289063 1081.17041015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL182W /GEN=LYS20 /DB_XREF=GI:6320019 /SEG=NC_001136:+133438,134724 /DEF=homocitrate synthase, highly homologous to YDL131W /NOTE=Lys20p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: homocitrate synthase activity [goid GO:0004410] [evidence IEP,IGI,IMP] [pmid 8923736]; go_function: homocitrate synthase activity [goid GO:0004410] [evidence ISS] [pmid 9099739]; go_process: lysine biosynthesis, aminoadipic pathway [goid GO:0019878] [evidence TAS] [pmid 10103047] --- --- --- --- --- --- S0002341 // LYS20 SGDID:S0002341, Chr IV from 133438-134724, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023578 // cdna:GeneFinder chromosome:SGD1:IV:133438:134724:1 // ensembl // 11 // --- /// GENSCAN00000024967 // cdna:Genscan chromosome:SGD1:IV:133438:134724:1 // ensembl // 11 // --- /// YDL182W // cdna:known chromosome:SGD1:IV:133438:134724:1 gene:YDL182W // ensembl // 11 // --- --- No cerevisiae_gene 2.04130754834219 1.14688716951629 -1.39033870144206 1.30579084712429 1.03291588840851 Max fold change below threshold 4 2.04130754834219 Max fold change at or above threshold -0.879045598736742 0.18456346662943 1.33518399107998 -0.640701858972666 1173.78662109375 144.55430344155 0.123152113717954 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772982_at SPAPB2B4.01c.S1 --- 2.04125493248268 --- --- --- --- 8.47401237487793 9.22819232940674 7.93514204025269 4.15469169616699 0.0952147990465164 0.149657994508743 0.0805663987994194 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB2B4.01c /DEF=N-acetylglucosaminylphosphatidylinositol deacetylase activity (predicted) --- --- --- --- --- --- SPAPB2B4.01c // |gpi12||pigL|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.04125493248268 1.08899915661731 -1.31637357077001 -1.06790934956069 -2.03962483731244 Max fold change below threshold 4 2.04125493248268 Max fold change at or above threshold APAPAA No 4 0 AAAA 4 0 0 No No x = 1
1777973_at YPR105C.S1 Essential component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tethering complex that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments 2.04055039074067 323.741149902344 677.608032226563 COG4 301 // retrograde transport, vesicle recycling within Golgi // inferred from mutant phenotype /// 6891 // intra-Golgi transport // inferred from physical interaction /// 6891 // intra-Golgi transport // inferred from genetic interaction 17119 // Golgi transport complex // inferred from physical interaction --- 653.213134765625 327.366149902344 320.116149902344 702.0029296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR105C /GEN=COG4 /DB_XREF=GI:6325362 /SEG=NC_001148:-736980,739565 /DEF=Conserved Oligomeric Golgi complex 4 Complexed with Cog8p /NOTE=Cog4p; go_component: Golgi transport complex [goid GO:0017119] [evidence IPI] [pmid 11703943]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: intra-Golgi transport [goid GO:0006891] [evidence IGI,IPI] [pmid 11703943]; go_process: retrograde transport, vesicle recycling within Golgi [goid GO:0000301] [evidence IMP] [pmid 11703943] --- --- --- --- --- --- S0006309 // COG4 SGDID:S0006309, Chr XVI from 739567-736982, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017261 // cdna:Genscan chromosome:SGD1:XVI:736982:739567:-1 // ensembl // 10 // --- /// YPR105C // cdna:known chromosome:SGD1:XVI:736982:739567:-1 gene:YPR105C // ensembl // 10 // --- --- No cerevisiae_gene 1.05204235672444 -1.99535943151265 1.2994498163189 -2.04055039074067 1.07469199917326 Max fold change below threshold 4 2.04055039074067 Max fold change at or above threshold 0.74302075356669 -0.844191673968037 -0.879506685719504 0.980677606120851 500.674591064453 205.295132025516 0.410037049391803 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777739_at SPBC1604.03c.S1 --- 2.03950218340731 --- --- --- --- 7.09826898574829 12.6654300689697 10.047342300415 3.48039293289185 0.129638999700546 0.171387001872063 0.111571997404099 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1604.03c /DEF=sequence orphan --- --- --- --- --- --- SPBC1604.03c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.48020776396302 1.78429841055601 -1.00084451714005 1.41546373074729 -2.03950218340731 Max fold change below threshold 4 2.03950218340731 Max fold change at or above threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1779948_at SPAC24C9.12c.S1 --- 2.03913402026963 --- --- --- --- 14.9388265609741 18.9731845855713 8.54825401306152 9.50944423675537 0.0239257998764515 0.00415039015933871 0.111571997404099 0.0107421996071935 P P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24C9.12c /DEF=serine hydroxymethyltransferase (predicted) --- --- --- --- --- --- SPAC24C9.12c // |||glycine hydroxymethyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.03913402026963 1.27005856237306 -1.13075713073093 -1.74758804992785 -1.57094633388073 Max fold change below threshold 4 2.03913402026963 Max fold change at or above threshold PPPPAP No 3 0 PPAP 1 3 0 No No 2 < x = 3
AFFX-r2-Ec-bioD-3_at AFFX-r2-Ec-bioD-3 --- 2.03907801882987 --- --- --- --- 2888.0732421875 3621.42846679688 1416.3623046875 1714.7646484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5312-5559 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --- --- --- --- --- --- J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// AFFX-r2-Ec-bioD-3 // E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5312-5559 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// AFFX-r2-Ec-bioD-3 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioD-3 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioD-3 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioD-3 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioD-3 // --- // gb // --- // --- /// AFFX-r2-Ec-bioD-3 // E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5312-5559 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-3 // --- // unknown // --- // --- /// AFFX-r2-Ec-bioD-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-3 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-3 // --- // affx // --- // --- /// AFFX-r2-Ec-bioD-3 // --- // affx // --- // --- 957997 // gb // 3 // Cross Hyb Matching Probes /// 16445223 // gb // 3 // Cross Hyb Matching Probes /// 917592 // gb // 3 // Cross Hyb Matching Probes /// 15829254 // gb // 3 // Cross Hyb Matching Probes /// 1036660 // gb // 5 // Cross Hyb Matching Probes /// 26245917 // gb // 5 // Cross Hyb Matching Probes AFFX_control No -1.58367936643979 1.25392542470769 -1.6567198522536 -2.03907801882987 -1.68423885156434 Max fold change below threshold 4 2.03907801882987 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780056_at YBR014C.S1 Hypothetical protein 2.03889575949508 728.516540527344 1175.15893554688 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5624 // membrane fraction // inferred from direct assay --- 1182.24755859375 579.846984863281 877.186096191406 1168.0703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR014C /GEN=IPP1 /DB_XREF=GI:6319488 /SEG=NC_001134:-266687,267298 /DEF=Hypothetical ORF /NOTE=Ybr014cp; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 11935221]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000218 // span:10-27 // numtm:1 S0000218 // YBR014C SGDID:S0000218, Chr II from 267336-266725, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021150 // cdna:Genscan chromosome:SGD1:II:266725:267336:-1 // ensembl // 11 // --- /// GENEFINDER00000022329 // cdna:GeneFinder chromosome:SGD1:II:266725:267336:-1 // ensembl // 11 // --- /// YBR014C // cdna:known chromosome:SGD1:II:266725:267336:-1 gene:YBR014C // ensembl // 11 // --- --- No cerevisiae_gene -1.60044736640543 -2.03889575949508 1.32025885051604 -1.347772797274 -1.01213732250707 Max fold change below threshold 4 2.03889575949508 Max fold change at or above threshold 0.80825618742619 -1.30490891053042 -0.261871005660893 0.758523728765122 951.837738037109 285.070283582186 0.299494622024612 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776004_at YPR019W.S1 Essential helicase component of heterohexameric MCM2-7 complexes which bind pre-replication complexes on DNA and melt the DNA prior to replication; accumulates in the nucleus in G1; homolog of S. pombe Cdc21p 2.03854242761835 296.806335449219 455.478088378906 CDC54 6267 // pre-replicative complex formation and maintenance // inferred from physical interaction /// 6268 // DNA unwinding // traceable author statement /// 6270 // DNA replication initiation // traceable author statement 5634 // nucleus // inferred from direct assay /// 5656 // pre-replicative complex // inferred from direct assay /// 5737 // cytoplasm // traceable author statement /// 5737 // cytoplasm // inferred from direct assay /// 42555 // MCM complex // inferred from direct assay 3682 // chromatin binding // traceable author statement /// 4003 // ATP-dependent DNA helicase activity // traceable author statement 439.729583740234 248.536071777344 345.076599121094 471.226593017578 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR019W /GEN=CDC54 /DB_XREF=GI:6325276 /SEG=NC_001148:+596745,599546 /DEF=Essential helicase component of heterohexameric MCM2-7 complexes which bind pre-replication complexes on DNA and melt the DNA prior to replication; accumulates in the nucleus in G1; homolog of S. pombe Cdc21p /NOTE=Cdc54p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10704410]; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 9442876]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10704410]; go_component: pre-replicative complex [goid GO:0005656] [evidence IDA] [pmid 9335335]; go_function: ATP-dependent DNA helicase activity [goid GO:0004003] [evidence TAS] [pmid 9914182]; go_function: chromatin binding [goid GO:0003682] [evidence TAS] [pmid 9442876]; go_process: DNA replication initiation [goid GO:0006270] [evidence TAS] [pmid 9442876]; go_process: DNA unwinding [goid GO:0006268] [evidence TAS] [pmid 9914182]; go_process: pre-replicative complex formation and maintenance [goid GO:0006267] [evidence IPI] [pmid 9335335] --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 2.59999990463257 --- S0006223 // CDC54 SGDID:S0006223, Chr XVI from 596747-599548, Verified ORF // sgd // 11 // --- /// GENSCAN00000017200 // cdna:Genscan chromosome:SGD1:XVI:596747:599548:1 // ensembl // 11 // --- /// GENEFINDER00000021020 // cdna:GeneFinder chromosome:SGD1:XVI:596747:599548:1 // ensembl // 11 // --- /// YPR019W // cdna:known chromosome:SGD1:XVI:596747:599548:1 gene:YPR019W // ensembl // 11 // --- --- No cerevisiae_gene -2.03854242761835 -1.76927872318741 -1.070143302363 -1.27429557628718 1.0716281333847 Max fold change below threshold 4 2.03854242761835 Max fold change at or above threshold 0.632375890765769 -1.26904201602693 -0.308947264180721 0.94561338944188 376.142211914063 100.553124739103 0.26732741381889 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778515_at YNR045W.S1 Specific translational activator for the COX3 mRNA that acts together with Pet54p and Pet122p; located in the mitochondrial inner membrane 2.03834853547864 883.4423828125 1002.43695068359 PET494 6412 // protein biosynthesis // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay 45182 // translation regulator activity // inferred from mutant phenotype 957.024169921875 764.397644042969 1002.48712158203 1047.84973144531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR045W /GEN=PET494 /DB_XREF=GI:6324373 /SEG=NC_001146:+706138,707607 /DEF=Specific translational activator for the COX3 mRNA that acts together with Pet54p and Pet122p; located in the mitochondrial inner membrane /NOTE=Pet494p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 8389363]; go_function: translation regulator activity [goid GO:0045182] [evidence IMP] [pmid 2833749]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP] [pmid 2833749] --- --- --- --- --- S0005328 // span:74-96 // numtm:1 S0005328 // PET494 SGDID:S0005328, Chr XIV from 706139-707608, Verified ORF // sgd // 11 // --- /// GENSCAN00000020072 // cdna:Genscan chromosome:SGD1:XIV:706139:707608:1 // ensembl // 11 // --- /// GENEFINDER00000020703 // cdna:GeneFinder chromosome:SGD1:XIV:706139:707608:1 // ensembl // 11 // --- /// YNR045W // cdna:known chromosome:SGD1:XIV:706139:707608:1 gene:YNR045W // ensembl // 11 // --- --- No cerevisiae_gene -2.03834853547864 -1.25199780164168 1.26023968034457 1.04750449684449 1.09490414597455 Max fold change below threshold 4 2.03834853547864 Max fold change at or above threshold 0.112974493783702 -1.43211971237336 0.477641524372545 0.841503694217109 942.939666748047 124.669761307309 0.132213932347615 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779392_at SPAC227.01c.S1 --- 2.03819081390343 --- --- --- --- 0.938936531543732 1.91373181343079 1.80889058113098 0.581309735774994 0.524658203125 0.5 0.533936023712158 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC227.01c /DEF=involved in protein-ER retention (predicted) --- --- --- --- --- --- SPAC227.01c // ||SPAPB21F2.04c|EXS family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.23069260155881 2.03819081390343 -1.04237265200095 1.92653126208321 -1.61520868094864 Max fold change below threshold 0 2.03819081390343 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770938_at YDR038C.S1 P-type ATPase sodium pump, involved in Na+ and Li+ efflux to allow salt tolerance /// P-type ATPase sodium pump, involved in Na+ efflux to allow salt tolerance; likely not involved in Li+ efflux /// Protein with similarity to P-type ATPase sodium pumps 2.03809531323638 2787.74328613281 3417.13635253906 ENA1 /// ENA2 /// ENA5 6814 // sodium ion transport // inferred from mutant phenotype /// 6814 // sodium ion transport // inferred from genetic interaction /// 6814 // sodium ion transport // inferred from sequence similarity 5886 // plasma membrane // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from sequence similarity 15662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from genetic interaction /// 15662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from mutant phenotype /// 15662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from sequence similarity 3657.84643554688 3510.12524414063 2065.361328125 3176.42626953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR038C /GEN=ENA5 /DB_XREF=GI:6320243 /SEG=NC_001136:-527417,530692 /DEF=Protein with similarity to P-type ATPase sodium pumps /NOTE=Ena5p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 7664728]; go_function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [goid GO:0015662] [evidence ISS] [pmid 7664728]; go_process: sodium ion transport [goid GO:0006814] [evidence ISS] [pmid 7664728] --- --- --- ec // A1A1_HUMAN // (P05023) Sodium/potassium-transporting ATPase alpha-1 chain precursor (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) // 0.0 --- S0002445 // span:65-87,91-110,286-303,313-335,815-837,852-869,897-919,939-961,990-1012,1022-1044 // numtm:10 /// S0002446 // span:65-87,91-110,286-303,313-335,815-837,852-869,897-919,939-961,990-1012,1022-1044 // numtm:10 /// S0002447 // span:65-87,91-110,286-303,313-335,815-837,852-869,897-919,939-961,990-1012,1022-1044 // numtm:10 S0002445 // ENA5 SGDID:S0002445, Chr IV from 530693-527418, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023801 // cdna:GeneFinder chromosome:SGD1:IV:527418:530693:-1 // ensembl // 11 // --- /// GENSCAN00000025126 // cdna:Genscan chromosome:SGD1:IV:527418:530693:-1 // ensembl // 11 // --- /// YDR038C // cdna:known chromosome:SGD1:IV:527418:530693:-1 gene:YDR038C // ensembl // 11 // --- --- No cerevisiae_gene -2.03809531323638 -1.04208430786133 -1.02393727786274 -1.77104431352338 -1.15156031500982 Max fold change below threshold 4 2.03809531323638 Max fold change at or above threshold 0.771276656517891 0.56614062954377 -1.44016006994055 0.102742783878894 3102.43981933594 720.113349104135 0.232111947705168 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778087_at SPCC16A11.10c.S1 --- 2.03759230925961 --- --- --- --- 7.48198938369751 15.2452440261841 9.48917102813721 6.44408988952637 0.194580003619194 0.00805663969367743 0.0375977009534836 0.0461426004767418 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16A11.10c /GEN=oca8 /DEF=cytochrome b5 (predicted) --- --- --- --- --- --- SPCC16A11.10c // |oca8||cytochrome b5 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- AJ131354 // gb // 3 // Cross Hyb Matching Probes No No 1.1830221767832 2.03759230925961 -1.1971555663659 1.26826844325831 -1.16106223096888 Max fold change below threshold 4 2.03759230925961 Max fold change at or above threshold AAPAPP No 4 0 APPP 1 3 0 No No 2 < x = 3
1771695_at YPR001W.S1 Citrate synthase, catalyzes the condensation of acetyl coenzyme A and oxaloacetate to form citrate, mitochondrial isozyme involved in the TCA cycle 2.03692558356308 178.030334472656 108.302890777588 CIT3 6099 // tricarboxylic acid cycle // traceable author statement /// 6101 // citrate metabolism // traceable author statement /// 19541 // propionate metabolism // inferred from expression pattern 5759 // mitochondrial matrix // non-traceable author statement 4108 // citrate (Si)-synthase activity // traceable author statement 100.282028198242 151.793640136719 204.267028808594 116.323753356934 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR001W /GEN=CIT3 /DB_XREF=GI:6325257 /SEG=NC_001148:+556372,557832 /DEF=Mitochondrial isoform of citrate synthase /NOTE=Cit3p; go_component: mitochondrial matrix [goid GO:0005759] [evidence NAS]; go_function: citrate (Si)-synthase activity [goid GO:0004108] [evidence TAS] [pmid 9175438]; go_process: citrate metabolism [goid GO:0006101] [evidence TAS] [pmid 9175438]; go_process: propionate metabolism [goid GO:0019541] [evidence IEP] [pmid 11179416]; go_process: tricarboxylic acid cycle [goid GO:0006099] [evidence TAS] [pmid 9175438] --- --- --- --- --- --- S0006205 // CIT3 SGDID:S0006205, Chr XVI from 556374-557834, Verified ORF // sgd // 11 // --- /// GENSCAN00000017185 // cdna:Genscan chromosome:SGD1:XVI:556374:557834:1 // ensembl // 11 // --- /// GENEFINDER00000020934 // cdna:GeneFinder chromosome:SGD1:XVI:556575:557834:1 // ensembl // 11 // --- /// YPR001W // cdna:known chromosome:SGD1:XVI:556374:557834:1 gene:YPR001W // ensembl // 11 // --- --- No cerevisiae_gene 1.63121692163656 1.51366743238027 1.73023438687552 2.03692558356308 1.15996610207144 Max fold change below threshold 4 2.03692558356308 Max fold change at or above threshold -0.930858629100918 0.187259433896421 1.32625395363264 -0.582654758428138 143.166612625122 46.069921990518 0.32179235888713 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772847_at YKL172W.S1 Essential protein required for the maturation of 25S rRNA and 60S ribosomal subunit assembly, localizes to the nucleolus; constituent of 66S pre-ribosomal particles 2.03690009384486 286.829193115234 340.342483520508 EBP2 6364 // rRNA processing // inferred from mutant phenotype 5730 // nucleolus // inferred from direct assay --- 341.3212890625 272.550720214844 301.107666015625 339.363677978516 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL172W /GEN=EBP2 /DB_XREF=GI:6322676 /SEG=NC_001143:+125764,127047 /DEF=Essential protein required for the maturation of 25S rRNA and 60S ribosomal subunit assembly, localizes to the nucleolus /NOTE=Ebp2p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 10849420]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 10849420] --- --- --- --- --- --- S0001655 // EBP2 SGDID:S0001655, Chr XI from 125764-127047, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023144 // cdna:GeneFinder chromosome:SGD1:XI:125764:127047:1 // ensembl // 11 // --- /// GENSCAN00000018292 // cdna:Genscan chromosome:SGD1:XI:126070:127047:1 // ensembl // 11 // --- /// YKL172W // cdna:known chromosome:SGD1:XI:125764:127047:1 gene:YKL172W // ensembl // 11 // --- --- No cerevisiae_gene 2.03690009384486 -1.25232209547436 -1.26773703188052 -1.13355230565531 -1.00576847556475 Max fold change below threshold 4 2.03690009384486 Max fold change at or above threshold 0.839654138697316 -1.24228400195776 -0.377760185454643 0.780390048715092 313.585838317871 33.0319943252577 0.105336371382225 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771272_at YPR182W.S1 Sm or Sm-like snRNP protein 2.03652539971967 1151.15826416016 624.824920654297 SMX3 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 31202 // RNA splicing factor activity, transesterification mechanism // inferred from physical interaction 589.868041992188 1101.03527832031 1201.28125 659.781799316406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR182W /GEN=SMX3 /DB_XREF=GI:6325440 /SEG=NC_001148:+900188,900448 /DEF=Sm or Sm-like snRNP protein /NOTE=Smx3p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence IDA] [pmid 10377396]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10377396] --- --- --- --- --- --- S0006386 // SMX3 SGDID:S0006386, Chr XVI from 900190-900450, Verified ORF // sgd // 11 // --- /// GENSCAN00000017325 // cdna:Genscan chromosome:SGD1:XVI:900190:900450:1 // ensembl // 11 // --- /// YPR182W // cdna:known chromosome:SGD1:XVI:900190:900450:1 gene:YPR182W // ensembl // 11 // --- GENEFINDER00000020847 // ensembl // 11 // Negative Strand Matching Probes No cerevisiae_gene 1.13034852248428 1.86657896332498 1.26736936951479 2.03652539971967 1.11852440265809 Max fold change below threshold 4 2.03652539971967 Max fold change at or above threshold -0.968097951064135 0.69181772299598 1.01734691936585 -0.741066691297691 887.991592407227 307.947713438853 0.346791249007266 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770440_at YIL094C.S1 Homo-isocitrate dehydrogenase, an NAD-linked mitochondrial enzyme required for the fourth step in the biosynthesis of lysine, in which homo-isocitrate is oxidatively decarboxylated to alpha-ketoadipate 2.03641109163194 1326.03393554688 1174.94342041016 LYS12 9085 // lysine biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 47046 // homoisocitrate dehydrogenase activity // traceable author statement 1118.25927734375 1185.27368164063 1466.79418945313 1231.62756347656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL094C /GEN=LYS12 /DB_XREF=GI:6322097 /SEG=NC_001141:-186514,187629 /DEF=homo-isocitrate dehydrogenase, an NAD-linked mitochondrial enzyme required for the fourth step in the biosynthesis of lysine, in which homo-isocitrate is oxidatively decarboxylated to alpha-ketoadipate. /NOTE=Lys12p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10077615]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11914276]; go_function: homoisocitrate dehydrogenase activity [goid GO:0047984] [evidence TAS] [pmid 10714900]; go_process: lysine biosynthesis [goid GO:0009085] [evidence TAS] --- --- --- --- --- --- S0001356 // LYS12 SGDID:S0001356, Chr IX from 187629-186514, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019122 // cdna:GeneFinder chromosome:SGD1:IX:184194:187629:-1 // ensembl // 10 // --- /// GENSCAN00000016406 // cdna:Genscan chromosome:SGD1:IX:186514:187629:-1 // ensembl // 11 // --- /// YIL094C // cdna:known chromosome:SGD1:IX:186514:187629:-1 gene:YIL094C // ensembl // 11 // --- AJ223169 // gb // 8 // Negative Strand Matching Probes /// U24167 // gb // 3 // Negative Strand Matching Probes No cerevisiae_gene 2.03641109163194 1.05992742976035 1.02788474343888 1.31167629830648 1.10137924936523 Max fold change below threshold 4 2.03641109163194 Max fold change at or above threshold -0.872644974195062 -0.430384910793031 1.42750338860254 -0.124473503614442 1250.48867797852 151.527143964515 0.12117434298523 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773464_at YOR044W.S1 Hypothetical protein 2.03632234165601 2572.67932128906 1518.96978759766 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 1479.11315917969 3011.951171875 2133.40747070313 1558.82641601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR044W /GEN=WHI2 /DB_XREF=GI:6324618 /SEG=NC_001147:+413006,413479 /DEF=Hypothetical ORF /NOTE=Yor044wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005570 // span:7-29,34-56 // numtm:2 S0005570 // YOR044W SGDID:S0005570, Chr XV from 413006-413479, Uncharacterized ORF // sgd // 11 // --- /// YOR044W // cdna:known chromosome:SGD1:XV:413006:413479:1 gene:YOR044W // ensembl // 11 // --- --- No cerevisiae_gene 1.43415586253739 2.03632234165601 1.27933690933197 1.44235581805405 1.05389260202387 Max fold change below threshold 4 2.03632234165601 Max fold change at or above threshold -0.801611172370886 1.36658252671585 0.123885711085775 -0.688857065430744 2045.82455444336 706.965440099266 0.345565038098598 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772226_at YAL026C.S1 Integral membrane Ca(2+)-ATPase, potential aminophospholipid translocase required to form a specific class of secretory vesicles that accumulate upon actin cytoskeleton disruption; mutation affects maturation of the 18S rRNA 2.03624147243557 304.954261779785 531.694763183594 DRS2 6886 // intracellular protein transport // inferred from genetic interaction /// 6892 // post-Golgi transport // inferred from mutant phenotype /// 6892 // post-Golgi transport // inferred from genetic interaction /// 30490 // processing of 20S pre-rRNA // traceable author statement 139 // Golgi membrane // inferred from direct assay /// 5886 // plasma membrane // traceable author statement /// 30140 // trans-Golgi network transport vesicle // inferred from direct assay 4012 // phospholipid-translocating ATPase activity // traceable author statement /// 16887 // ATPase activity // traceable author statement 485.197448730469 238.280899047852 371.627624511719 578.192077636719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL026C /GEN=DRS2 /DB_XREF=GI:6319293 /SEG=NC_001133:-95633,99700 /DEF=Integral membrane Ca(2+)-ATPase, potential aminophospholipid translocase required to form a specific class of secretory vesicles that accumulate upon actin cytoskeleton disruption; mutation affects maturation of the 18S rRNA /NOTE=Drs2p; go_component: Golgi membrane [goid GO:0000139] [evidence IDA] [pmid 10601336]; go_component: plasma membrane [goid GO:0005886] [evidence TAS] [pmid 9852106]; go_component: trans-Golgi network transport vesicle [goid GO:0030140] [evidence IDA] [pmid 12221123]; go_function: ATPase activity [goid GO:0016887] [evidence TAS] [pmid 10601336]; go_function: phospholipid-translocating ATPase activity [goid GO:0004012] [evidence TAS] [pmid 8633245]; go_process: intracellular protein transport [goid GO:0006886] [evidence IGI] [pmid 12221123]; go_process: post-Golgi transport [goid GO:0006892] [evidence IGI,IMP] [pmid 10601336]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence TAS] [pmid 11560931] --- --- --- ec // A8A1_HUMAN // (Q9Y2Q0) Potential phospholipid-transporting ATPase IA (EC 3.6.3.1) (Chromaffin granule ATPase II) (ATPase class I type 8A member 1) // 0.0 --- S0000024 // span:410-427,448-470,495-517,1009-1031,1051-1073,1094-1116,1131-1153,1160-1182,1202-1219 // numtm:9 S0000024 // DRS2 SGDID:S0000024, Chr I from 99698-95631, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000020356 // cdna:Genscan chromosome:SGD1:I:95631:99698:-1 // ensembl // 10 // --- /// YAL026C // cdna:known chromosome:SGD1:I:95631:99698:-1 gene:YAL026C // ensembl // 10 // --- GENEFINDER00000018201 // ensembl // 8 // Cross Hyb Matching Probes /// YAL026C-A // ensembl // 2 // Cross Hyb Matching Probes No cerevisiae_gene -1.25126206770467 -2.03624147243557 1.28102774082565 -1.30560113599728 1.19166347463197 Max fold change below threshold 4 2.03624147243557 Max fold change at or above threshold 0.455625074570411 -1.22669033839853 -0.318159695939962 1.08922495976808 418.324512481689 146.77185251894 0.350856447900275 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773696_at YLR008C.S1 Constituent of the mitochondrial import motor associated with the presequence translocase, along with Ssc1p, Tim44p, Mge1p, and Pam16p; stimulates the ATPase activity of Ssc1p to drive mitochondrial import; contains a J domain 2.03594139251818 165.173629760742 324.877029418945 PAM18 30150 // mitochondrial matrix protein import // inferred from physical interaction /// 30150 // mitochondrial matrix protein import // inferred from mutant phenotype 1405 // presequence translocase-associated import motor // inferred from physical interaction /// 5744 // mitochondrial inner membrane presequence translocase complex // inferred from physical interaction 1671 // ATPase stimulator activity // inferred from direct assay /// 8565 // protein transporter activity // inferred from mutant phenotype /// 8565 // protein transporter activity // inferred from physical interaction /// 51082 // unfolded protein binding // inferred from sequence similarity 300.669891357422 147.681015014648 182.666244506836 349.084167480469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR008C /GEN=PAM18 /DB_XREF=GI:6323036 /SEG=NC_001144:-165576,166082 /DEF=Constituent of the mitochondrial import motor associated with the presequence translocase, along with Ssc1p, Tim44p, Mge1p, and Pam16p; stimulates the ATPase activity of Ssc1p to drive mitochondrial import; contains a J domain /NOTE=Pam18p; go_component: mitochondrial inner membrane presequence translocase complex [goid GO:0005744] [evidence IPI] [pmid 14638855]; go_component: presequence translocase-associated import motor [goid GO:0001405] [evidence IPI] [pmid 14638855]; go_function: ATPase stimulator activity [goid GO:0001671] [evidence IDA] [pmid 14605210]; go_function: chaperone activity [goid GO:0003754] [evidence ISS] [pmid 14690591]; go_function: protein transporter activity [goid GO:0008565] [evidence IMP,IPI] [pmid 14517234]; go_process: mitochondrial matrix protein import [goid GO:0030150] [evidence IMP,IPI] [pmid 14605210] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 0.0320000015199184 --- S0003998 // PAM18 SGDID:S0003998, Chr XII from 166082-165576, reverse complement, Verified ORF // sgd // 11 // --- /// YLR008C // cdna:known chromosome:SGD1:XII:165576:166082:-1 gene:YLR008C // ensembl // 11 // --- --- No cerevisiae_gene 1.10141325659226 -2.03594139251818 1.40514208233142 -1.64600685895291 1.16102136434238 Max fold change below threshold 4 2.03594139251818 Max fold change at or above threshold 0.583429665943424 -1.02064890314563 -0.653831012821728 1.09105025002393 245.025329589844 95.3749269461626 0.389245173573744 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770213_at YKL125W.S1 Required for transcription of rDNA by RNA Polymerase I; DNA-independent RNA Polymerase I transcription factor 2.03553613220894 784.122589111328 1496.74914550781 RRN3 6360 // transcription from RNA polymerase I promoter // traceable author statement 120 // RNA polymerase I transcription factor complex // traceable author statement 3701 // RNA polymerase I transcription factor activity // traceable author statement 1442.11547851563 859.775573730469 708.469604492188 1551.3828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL125W /GEN=RRN3 /DB_XREF=GI:6322724 /SEG=NC_001143:+207893,209776 /DEF=Required for transcription of rDNA by RNA Polymerase I /NOTE=Rrn3p; go_component: RNA polymerase I transcription factor complex [goid GO:0000120] [evidence TAS] [pmid 9932458]; go_function: RNA polymerase I transcription factor activity [goid GO:0003701] [evidence TAS] [pmid 9932458]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS] [pmid 9932458] --- --- --- --- --- --- S0001608 // RRN3 SGDID:S0001608, Chr XI from 207893-209776, Verified ORF // sgd // 11 // --- /// GENSCAN00000018324 // cdna:Genscan chromosome:SGD1:XI:208043:209776:1 // ensembl // 11 // --- /// GENEFINDER00000023025 // cdna:GeneFinder chromosome:SGD1:XI:208043:209776:1 // ensembl // 11 // --- /// YKL125W // cdna:known chromosome:SGD1:XI:207893:209776:1 gene:YKL125W // ensembl // 11 // --- --- No cerevisiae_gene 1.17584826571614 -1.67731617712568 -1.86213471628036 -2.03553613220894 1.0757687824673 Max fold change below threshold 4 2.03553613220894 Max fold change at or above threshold 0.720978481682107 -0.670744806134429 -1.03234812276144 0.982114447213759 1140.43586730957 418.430811557939 0.366904289449497 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775226_at YBR063C.S1 Hypothetical protein 2.03521199414323 583.197845458984 1236.43713378906 --- --- --- --- 1183.57775878906 584.845581054688 581.550109863281 1289.29650878906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR063C /GEN=TRM7 /DB_XREF=GI:6319538 /SEG=NC_001134:-366931,368145 /DEF=Hypothetical ORF /NOTE=Ybr063cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000267 // YBR063C SGDID:S0000267, Chr II from 368182-366968, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021190 // cdna:Genscan chromosome:SGD1:II:366968:367822:-1 // ensembl // 11 // --- /// YBR063C // cdna:known chromosome:SGD1:II:366968:368182:-1 gene:YBR063C // ensembl // 11 // --- --- No cerevisiae_gene -1.46355158624886 -2.02374403967393 -1.17950083546063 -2.03521199414323 1.08932133880934 Max fold change below threshold 4 2.03521199414323 Max fold change at or above threshold 0.721158590681995 -0.856063899666231 -0.864745062083539 0.999650371067775 909.817489624023 379.611742413199 0.417239442792061 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772917_at SPAPB1A10.08.S1 --- 2.03509680275241 --- --- --- --- 5.89266586303711 7.82220125198364 4.06341075897217 2.97617816925049 0.0107421996071935 0.171387001872063 0.129638999700546 0.0676269978284836 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1A10.08 /DEF=sequence orphan --- --- --- --- --- --- SPAPB1A10.08 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.03509680275241 1.3274469372258 -1.32748734635862 -1.45017725565299 -1.97994391730959 Max fold change below threshold 4 2.03509680275241 Max fold change at or above threshold PPAAAA No 4 0 PAAA 3 1 0 No No x = 1
1770372_at YLR181C.S1 Multivesicular body (MVB) protein involved in endosomal protein sorting; binds to Vps20p and Vps4p; may regulate Vps4p function; bindsVps60p and may act at a late step in MVB formation; mutants show class E vacuolar-protein sorting defects 2.0350553792839 352.320541381836 420.591827392578 VTA1 45324 // late endosome to vacuole transport // inferred from mutant phenotype /// 45324 // late endosome to vacuole transport // inferred from physical interaction 5768 // endosome // inferred from direct assay /// 5771 // multivesicular body // inferred from direct assay --- 452.669494628906 307.96728515625 396.673797607422 388.51416015625 0.000732421991415322 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR181C /GEN=VTA1 /DB_XREF=GI:6323210 /SEG=NC_001144:-516680,517672 /DEF=Has coiled-coil domains and is involved in class E vacuolar-protein sorting; binds to Vps20 and Vps4 and may regulate Vps4 function /NOTE=Vta1p; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: late endosome to vacuole transport [goid GO:0045324] [evidence IMP,IPI] [pmid 12953057] --- --- --- --- --- --- S0004171 // VTA1 SGDID:S0004171, Chr XII from 517672-516680, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017961 // cdna:Genscan chromosome:SGD1:XII:516680:517672:-1 // ensembl // 11 // --- /// GENEFINDER00000024784 // cdna:GeneFinder chromosome:SGD1:XII:516680:517540:-1 // ensembl // 11 // --- /// YLR181C // cdna:known chromosome:SGD1:XII:516680:517672:-1 gene:YLR181C // ensembl // 11 // --- --- No cerevisiae_gene -2.0350553792839 -1.46986227579089 -1.20003291114089 -1.14116308503165 -1.16512997736519 Max fold change below threshold 4 2.0350553792839 Max fold change at or above threshold 1.1111250514215 -1.31712161611716 0.171461689096558 0.0345348755991056 386.456184387207 59.5912315692913 0.154199192500396 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774005_at YNL155W.S1 Hypothetical protein 2.03423705695469 1899.13128662109 1029.04473876953 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1025.27197265625 2085.64624023438 1712.61633300781 1032.81750488281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL155W /GEN=ASI2 /DB_XREF=GI:6324174 /SEG=NC_001146:+342516,343340 /DEF=Hypothetical ORF /NOTE=Ynl155wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005099 // YNL155W SGDID:S0005099, Chr XIV from 342516-343340, Uncharacterized ORF // sgd // 9 // --- /// GENSCAN00000019913 // cdna:Genscan chromosome:SGD1:XIV:342516:343340:1 // ensembl // 9 // --- /// GENEFINDER00000020693 // cdna:GeneFinder chromosome:SGD1:XIV:342516:343340:1 // ensembl // 9 // --- /// YNL155W // cdna:known chromosome:SGD1:XIV:342516:343340:1 gene:YNL155W // ensembl // 9 // --- --- No cerevisiae_gene 1.65326202031949 2.03423705695469 -1.13351336688381 1.67040197984814 1.00735954208035 Max fold change below threshold 4 2.03423705695469 Max fold change at or above threshold -0.835951430580483 1.18407816052963 0.473450343534627 -0.821577073483772 1464.08801269531 524.930066492439 0.358537234060177 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773195_at YBL060W.S1 Hypothetical protein 2.03417440867825 155.996086120605 338.738052368164 --- --- 5737 // cytoplasm // inferred from direct assay /// 5935 // bud neck // inferred from direct assay --- 310.510192871094 152.646789550781 159.34538269043 366.965911865234 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL060W /GEN=SKT5 /DB_XREF=GI:6319411 /SEG=NC_001134:+107896,109959 /DEF=Hypothetical ORF /NOTE=Ybl060wp; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 14562095]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000156 // YBL060W SGDID:S0000156, Chr II from 107934-109997, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021091 // cdna:Genscan chromosome:SGD1:II:107934:109997:1 // ensembl // 11 // --- /// GENEFINDER00000022196 // cdna:GeneFinder chromosome:SGD1:II:109095:109997:1 // ensembl // 11 // --- /// YBL060W // cdna:known chromosome:SGD1:II:107934:109997:1 gene:YBL060W // ensembl // 11 // --- --- No cerevisiae_gene -1.85169949350691 -2.03417440867825 1.09716930006866 -1.94866137711904 1.1818159928089 Max fold change below threshold 4 2.03417440867825 Max fold change at or above threshold 0.584502509266481 -0.876805548718777 -0.814798092105978 1.10710113155827 247.367069244385 108.028832426999 0.436714687840169 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780082_at YMR098C.S1 Hypothetical protein 2.03378472422193 589.819839477539 1074.9602355957 --- --- 5739 // mitochondrion // inferred from direct assay --- 1016.26605224609 499.692047119141 679.947631835938 1133.65441894531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR098C /GEN=MTG1 /DB_XREF=GI:6323745 /SEG=NC_001145:-460770,462608 /DEF=Hypothetical ORF /NOTE=Ymr098cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004704 // YMR098C SGDID:S0004704, Chr XIII from 462608-460770, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018794 // cdna:Genscan chromosome:SGD1:XIII:460770:462608:-1 // ensembl // 11 // --- /// GENEFINDER00000022044 // cdna:GeneFinder chromosome:SGD1:XIII:460770:461339:-1 // ensembl // 10 // --- /// YMR098C // cdna:known chromosome:SGD1:XIII:460770:462608:-1 gene:YMR098C // ensembl // 11 // --- --- No cerevisiae_gene -1.56318048518718 -2.03378472422193 1.17242211841889 -1.49462400435466 1.1155094834072 Max fold change below threshold 4 2.03378472422193 Max fold change at or above threshold 0.626408642368192 -1.13339902882561 -0.519324070326324 1.02631445678374 832.390037536621 293.540034847402 0.35264722258823 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779569_at YJR090C.S1 F-box protein component of the SCF ubiquitin-ligase complex, required for Cln1p and Cln2p degradation; involved in carbon catabolite repression, glucose-dependent divalent cation transport, high-affinity glucose transport, and morphogenesis 2.03344705309858 593.838287353516 962.515197753906 GRR1 82 // G1/S transition of mitotic cell cycle // traceable author statement /// 751 // cell cycle arrest in response to pheromone // inferred from mutant phenotype /// 16567 // protein ubiquitination // inferred from genetic interaction /// 16567 // protein ubiquitination // inferred from physical interaction /// 31146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from direct assay 142 // contractile ring (sensu Saccharomyces) // inferred from direct assay /// 152 // nuclear ubiquitin ligase complex // traceable author statement /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 19005 // SCF ubiquitin ligase complex // inferred from mutant phenotype 4842 // ubiquitin-protein ligase activity // traceable author statement /// 5515 // protein binding // traceable author statement 922.381896972656 646.884948730469 540.791625976563 1002.64849853516 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR090C /GEN=GRR1 /DB_XREF=GI:6322549 /SEG=NC_001142:-590786,594241 /DEF=F-box protein component of the SCF ubiquitin-ligase complex, required for Cln1p and Cln2p degradation; involved in carbon catabolite repression, glucose-dependent divalent cation transport, high-affinity glucose transport, and morphogenesis /NOTE=Grr1p; go_component: contractile ring (sensu Saccharomyces) [goid GO:0000142] [evidence IDA] [pmid 11080155]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11080155]; go_component: nuclear ubiquitin ligase complex [goid GO:0000152] [evidence TAS] [pmid 10409741]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11080155]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 10409741]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 10409741]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence TAS] [pmid 9346231]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 9346231] --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 3.29999995231628 --- S0003850 // GRR1 SGDID:S0003850, Chr X from 594241-590786, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024202 // cdna:Genscan chromosome:SGD1:X:590786:594079:-1 // ensembl // 11 // --- /// GENEFINDER00000024368 // cdna:GeneFinder chromosome:SGD1:X:590786:592177:-1 // ensembl // 11 // --- /// YJR090C // cdna:known chromosome:SGD1:X:590786:594241:-1 gene:YJR090C // ensembl // 11 // --- --- No cerevisiae_gene -2.03344705309858 -1.42588245217772 -1.22560437977657 -1.70561423784441 1.08702100705352 Max fold change below threshold 4 2.03344705309858 Max fold change at or above threshold 0.65644634937742 -0.597662539218899 -1.08061735935515 1.02183354919663 778.176742553711 219.675460996486 0.28229507383578 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778357_at YPL156C.S1 Pheromone-regulated protein, predicted to have 1 transmembrane segment; transcriptionally regulated by Ste12p during mating and by Cat8p during the diauxic shift 2.03317216294998 1572.94610595703 746.7578125 PRM4 747 // conjugation with cellular fusion // inferred from expression pattern 16021 // integral to membrane // inferred from sequence similarity --- 788.742858886719 1603.65002441406 1542.2421875 704.772766113281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL156C /GEN=PRM4 /DB_XREF=GI:6325101 /SEG=NC_001148:-255912,256766 /DEF=Pheromone-regulated protein, predicted to have 1 transmembrane segment; transcriptionally regulated by Ste12p during mating and by Cat8p during the diauxic shift /NOTE=Prm4p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 11062271]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IEP] [pmid 11062271] --- --- --- --- --- S0006077 // span:20-38 // numtm:1 S0006077 // PRM4 SGDID:S0006077, Chr XVI from 256766-255912, reverse complement, Verified ORF // sgd // 11 // --- /// YPL156C // cdna:known chromosome:SGD1:XVI:255912:256766:-1 gene:YPL156C // ensembl // 11 // --- --- No cerevisiae_gene 1.70711573059105 2.03317216294998 1.22200917868725 1.95531683123803 -1.11914491707238 Max fold change below threshold 4 2.03317216294998 Max fold change at or above threshold -0.774940983021511 0.926728308686528 0.798497959553134 -0.950285285218151 1159.85195922852 478.886919743017 0.412886244604486 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776347_at YMR213W.S1 Essential splicing factor; associated with Prp19p and the spliceosome, contains an N-terminal c-Myb DNA binding motif necessary for cell viability but not for Prp19p association, evolutionarily conserved and homologous to S. pombe Cdc5p 2.03221744747327 821.173522949219 614.363464355469 CEF1 398 // nuclear mRNA splicing, via spliceosome // inferred from mutant phenotype /// 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 5681 // spliceosome complex // inferred from direct assay 31202 // RNA splicing factor activity, transesterification mechanism // inferred from direct assay 617.214294433594 788.940063476563 853.406982421875 611.512634277344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR213W /GEN=CEF1 /DB_XREF=GI:6323869 /SEG=NC_001145:+693380,695152 /DEF=homolog of S. pombe cdc5+. c-Myb DNA binding motif at amino terminus is required for cellular growth but not for interaction of Cef1p with Prp19p. /NOTE=Cef1p; go_component: spliceosome complex [goid GO:0005681] [evidence IDA] [pmid 10092627]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IDA] [pmid 10092627]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IMP,IPI] [pmid 10092627] --- --- --- --- scop // a.4.1.Myb // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb // 5.0 /// scop // a.4.1.Myb // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb // 5.00000005843049E-8 --- S0004826 // CEF1 SGDID:S0004826, Chr XIII from 693380-695152, Verified ORF // sgd // 11 // --- /// GENSCAN00000018894 // cdna:Genscan chromosome:SGD1:XIII:694484:695152:1 // ensembl // 11 // --- /// YMR213W // cdna:known chromosome:SGD1:XIII:693380:695152:1 gene:YMR213W // ensembl // 11 // --- GENEFINDER00000022026 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene -2.03221744747327 1.27822714183987 1.36834911933709 1.38267533678077 -1.00932386321501 Max fold change below threshold 4 2.03221744747327 Max fold change at or above threshold -0.822259147177234 0.581989362568707 1.10915296393954 -0.868883179331013 717.768493652344 122.290155803005 0.17037548580704 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778437_at YDR085C.S1 Alpha-factor pheromone receptor regulator, negatively regulates pheromone receptor signaling; required for normal mating projection (shmoo) formation; interacts with Cdc12p 2.03209937748645 1492.02264404297 1049.79571533203 AFR1 750 // signal transduction during conjugation with cellular fusion // inferred from genetic interaction /// 750 // signal transduction during conjugation with cellular fusion // inferred from mutant phenotype /// 750 // signal transduction during conjugation with cellular fusion // inferred from physical interaction /// 767 // cellular morphogenesis during conjugation // inferred from mutant phenotype /// 8277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 8277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from physical interaction 1400 // mating projection base // inferred from direct assay 5057 // receptor signaling protein activity // inferred from mutant phenotype /// 5057 // receptor signaling protein activity // inferred from physical interaction 1015.72473144531 1643.97229003906 1340.07299804688 1083.86669921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR085C /GEN=AFR1 /DB_XREF=GI:6320290 /SEG=NC_001136:-614282,616144 /DEF=coordinates regulation of alpha-factor receptor signalling and induction of morphogenesis during conjugation /NOTE=Afr1p; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 7823940]; go_function: receptor signaling protein activity [goid GO:0005057] [evidence IMP,IPI] [pmid 9504911]; go_process: regulation of G-protein coupled receptor protein signaling pathway [goid GO:0008277] [evidence IMP,IPI] [pmid 9504911]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence IGI,IMP,IPI] [pmid 9504911] --- --- --- --- --- --- S0002492 // AFR1 SGDID:S0002492, Chr IV from 616145-614283, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023763 // cdna:GeneFinder chromosome:SGD1:IV:614283:615908:-1 // ensembl // 11 // --- /// GENSCAN00000025159 // cdna:Genscan chromosome:SGD1:IV:614283:616145:-1 // ensembl // 11 // --- /// YDR085C // cdna:known chromosome:SGD1:IV:614283:616145:-1 gene:YDR085C // ensembl // 11 // --- --- No cerevisiae_gene -2.03209937748645 1.61852147451386 -1.04741181567186 1.31932693628522 1.06708704205368 Max fold change below threshold 4 2.03209937748645 Max fold change at or above threshold -0.894670724196876 1.3079505644192 0.242486734148767 -0.655766574371092 1270.9091796875 285.227225325005 0.22442770095904 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773968_at YOL001W.S1 Cyclin, negatively regulates phosphate metabolism; Pho80p-Pho85p (cyclin-CDK complex) phosphorylates Pho4p and Swi5p; deletion of PHO80 leads to aminoglycoside supersensitivity; truncated form of PHO80 affects vacuole inheritance 2.03196763440983 743.986877441406 1300.03326416016 PHO80 19220 // regulation of phosphate metabolism // traceable author statement 307 // cyclin-dependent protein kinase holoenzyme complex // traceable author statement 16538 // cyclin-dependent protein kinase regulator activity // traceable author statement 1342.57250976563 660.725341796875 827.248413085938 1257.49401855469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL001W /GEN=PHO80 /DB_XREF=GI:6324573 /SEG=NC_001147:+325249,326130 /DEF=Cyclin, negatively regulates phosphate metabolism; Pho80p-Pho85p (cyclin-CDK complex) phosphorylates Pho4p and Swi5p; deletion of PHO80 leds to aminoglycoside supersensitivity; truncated form of PHO80 affects vacuole inheritance /NOTE=Pho80p; go_component: cyclin-dependent protein kinase holoenzyme complex [goid GO:0000307] [evidence TAS] [pmid 11602261]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS] [pmid 11602261]; go_process: regulation of phosphate metabolism [goid GO:0019220] [evidence TAS] [pmid 11602261] --- --- --- --- --- --- S0005361 // PHO80 SGDID:S0005361, Chr XV from 325249-326130, Verified ORF // sgd // 11 // --- /// GENSCAN00000017467 // cdna:Genscan chromosome:SGD1:XV:325249:326130:1 // ensembl // 11 // --- /// GENEFINDER00000022908 // cdna:GeneFinder chromosome:SGD1:XV:325249:326130:1 // ensembl // 11 // --- /// YOL001W // cdna:known chromosome:SGD1:XV:325249:326130:1 gene:YOL001W // ensembl // 11 // --- --- No cerevisiae_gene -1.82169541580416 -2.03196763440983 -1.07580471965517 -1.62293754636209 -1.06765717367684 Max fold change below threshold 4 2.03196763440983 Max fold change at or above threshold 0.971443368032506 -1.09484958716812 -0.590212382165122 0.713618601300739 1022.01007080078 329.98571971734 0.322879127266119 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778096_at YHR172W.S1 Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex; interacts with Spc110p at the spindle pole body (SPB) inner plaque and with Spc72p at the SPB outer plaque 2.0316289639484 59.7108898162842 92.4442291259766 SPC97 7020 // microtubule nucleation // traceable author statement 928 // gamma-tubulin complex (sensu Saccharomyces) // inferred from physical interaction /// 5822 // inner plaque of spindle pole body // inferred from direct assay /// 5824 // outer plaque of spindle pole body // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from physical interaction 99.8968276977539 70.2509765625 49.1708030700684 84.9916305541992 0.00195312988944352 0.00805663969367743 0.00292969006113708 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR172W /GEN=SPC97 /DB_XREF=GI:6321966 /SEG=NC_001140:+448333,450804 /DEF=Spindle Pole Body component with an molecular weight of 97 kDa /NOTE=Spc97p; go_component: inner plaque of spindle pole body [goid GO:0005822] [evidence IDA] [pmid 9215630]; go_component: outer plaque of spindle pole body [goid GO:0005824] [evidence IDA] [pmid 9215630]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9215630]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752] --- --- --- --- --- --- S0001215 // SPC97 SGDID:S0001215, Chr VIII from 448334-450805, Verified ORF // sgd // 11 // --- /// GENSCAN00000016698 // cdna:Genscan chromosome:SGD1:VIII:448334:450805:1 // ensembl // 11 // --- /// YHR172W // cdna:known chromosome:SGD1:VIII:448334:450805:1 gene:YHR172W // ensembl // 11 // --- --- No cerevisiae_gene 1.18926432964552 -1.42199913205305 -1.18500412417673 -2.0316289639484 -1.17537252840501 Max fold change below threshold 4 2.0316289639484 Max fold change at or above threshold 1.10075569863813 -0.269262862286159 -1.24343725250267 0.411944416150703 76.0775594711304 21.6390142300358 0.284433601451783 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1779706_at YBL005W.S1 Transcriptional activator of the pleiotropic drug resistance network, regulates expression of ATP-binding cassette (ABC) transporters through binding to cis-acting sites known as PDREs (PDR responsive elements) 2.03153782942409 571.343414306641 558.699981689453 PDR3 6357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 42493 // response to drug // traceable author statement /// 45893 // positive regulation of transcription, DNA-dependent // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5634 // nucleus // inferred from physical interaction /// 5737 // cytoplasm // inferred from direct assay 3677 // DNA binding // traceable author statement /// 3677 // DNA binding // inferred from physical interaction /// 16563 // transcriptional activator activity // traceable author statement /// 16563 // transcriptional activator activity // inferred from direct assay 524.047607421875 587.176452636719 555.510375976563 593.352355957031 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL005W /GEN=PDR3 /DB_XREF=GI:6319466 /SEG=NC_001134:+217435,220365 /DEF=Zinc-finger transcription factor related to Pdr1p /NOTE=Pdr3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 8798494]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 11421285]; go_function: DNA binding [goid GO:0003677] [evidence IPI] [pmid 8798494]; go_function: transcriptional activator activity [goid GO:0016563] [evidence TAS] [pmid 11421285]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence TAS] [pmid 11421285]; go_process: response to drug [goid GO:0042493] [evidence TAS] [pmid 11421285] --- --- --- --- --- --- S0000101 // PDR3 SGDID:S0000101, Chr II from 217473-220403, Verified ORF // sgd // 11 // --- /// GENSCAN00000021133 // cdna:Genscan chromosome:SGD1:II:217473:220403:1 // ensembl // 11 // --- /// YBL005W // cdna:known chromosome:SGD1:II:217473:220403:1 gene:YBL005W // ensembl // 11 // --- --- No cerevisiae_gene -2.03153782942409 1.12046395083343 1.74837665892227 1.06003799675658 1.13224895515908 Max fold change below threshold 4 2.03153782942409 Max fold change at or above threshold -1.28236183172341 0.693375041162029 -0.297674851548137 0.886661642109514 565.021697998047 31.9520509442374 0.0565501308311665 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772252_at YOR019W.S1 Hypothetical protein 2.03078338093194 2072.94519042969 1603.63531494141 --- --- --- --- 1612.2978515625 2207.97094726563 1937.91943359375 1594.97277832031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR019W /GEN=ROD1 /DB_XREF=GI:6324593 /SEG=NC_001147:+368126,370318 /DEF=Hypothetical ORF /NOTE=Yor019wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005545 // YOR019W SGDID:S0005545, Chr XV from 368126-370318, Uncharacterized ORF // sgd // 11 // --- /// YOR019W // cdna:known chromosome:SGD1:XV:368126:370318:1 gene:YOR019W // ensembl // 11 // --- --- No cerevisiae_gene -2.03078338093194 1.36945598800237 -1.33147026170538 1.20196118336056 -1.010862300271 Max fold change below threshold 4 2.03078338093194 Max fold change at or above threshold -0.772327262225132 1.26338088061227 0.340481946057424 -0.831535564444564 1838.29025268555 292.612228230745 0.159176293190518 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-r2-Sp-RIP1-5_at AFFX-r2-Sp-RIP1-5 --- 2.03051182775849 --- --- --- --- 4.78342294692993 2.91058802604675 5.73580932617188 2.42768478393555 0.334473013877869 0.665526986122131 0.129638999700546 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=RIP1 ubiquinol-cytochrome c reductase iron-sulpher subunit precursor (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- U40480 // Schizosaccharomyces pombe Rieske iron-sulfur protein (Rip1) mRNA, complete cds. // gb // 11 // --- /// SPBC16H5.06 // |rip1||ubiquinol-cytochrome-c reductase complex subunit 5|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- AFFX_control No -1.77423930524341 -1.6434558598205 -2.03051182775849 1.19910143631627 -1.97036410104918 Max fold change below threshold 3 2.03051182775849 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770036_at YOL090W.S1 Protein that forms heterodimers, with Msh3p and Msh6p, that bind to DNA mismatches to initiate the mismatch repair process; contains a Walker ATP-binding motif required for repair activity; Msh2p-Msh6p binds to and hydrolyzes ATP 2.0304455935705 69.0028553009033 69.2111644744873 MSH2 735 // removal of nonhomologous ends // traceable author statement /// 6298 // mismatch repair // inferred from mutant phenotype /// 6310 // DNA recombination // inferred from mutant phenotype /// 6312 // mitotic recombination // inferred from mutant phenotype 228 // nuclear chromosome // inferred from direct assay 3684 // damaged DNA binding // inferred from direct assay /// 5524 // ATP binding // inferred from direct assay /// 16887 // ATPase activity // inferred from direct assay 56.6546363830566 75.1906433105469 62.8150672912598 81.767692565918 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL090W /GEN=MSH2 /DB_XREF=GI:6324482 /SEG=NC_001147:+147381,150275 /DEF=Functions with Pms1p and Pms2/Mlh1p in a complex that interacts with Pms3p/Msh6p to repair single-base and insertion-deletion mispairs, or Msh3p to repair insertion-deletion mispairs. /NOTE=Msh2p; go_component: nuclear chromosome [goid GO:0000228] [evidence IDA] [pmid 10882115]; go_function: ATP binding [goid GO:0005524] [evidence IDA] [pmid 9545323]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 9819445]; go_function: damaged DNA binding [goid GO:0003684] [evidence IDA] [pmid 8805366]; go_process: DNA recombination [goid GO:0006310] [evidence IMP] [pmid 9256462]; go_process: mismatch repair [goid GO:0006298] [evidence IMP] [pmid 8056309]; go_process: mitotic recombination [goid GO:0006312] [evidence IMP] [pmid 8849883]; go_process: removal of nonhomologous ends [goid GO:0000735] [evidence TAS] [pmid 10357855] --- --- --- --- --- --- S0005450 // MSH2 SGDID:S0005450, Chr XV from 147381-150275, Verified ORF // sgd // 11 // --- /// GENSCAN00000017394 // cdna:Genscan chromosome:SGD1:XV:147381:150275:1 // ensembl // 11 // --- /// GENEFINDER00000022892 // cdna:GeneFinder chromosome:SGD1:XV:147381:150275:1 // ensembl // 11 // --- /// YOL090W // cdna:known chromosome:SGD1:XV:147381:150275:1 gene:YOL090W // ensembl // 11 // --- --- No cerevisiae_gene 2.0304455935705 1.32717546366662 1.34204597690779 1.10873657129402 1.44326568461344 Max fold change below threshold 4 2.0304455935705 Max fold change at or above threshold -1.08942019361987 0.532238540625722 -0.550462875137863 1.10764452813202 69.1070098876953 11.4302760106388 0.165399661036035 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778031_at YPL157W.S1 Trimethyl guanosine synthase, conserved nucleolar methyl transferase responsible for conversion of the m(7)G cap structure of snRNAs and snoRNAs to m(2,2,7)G; also required for ribosome synthesis and nucleolar morphology 2.03032379223533 149.609817504883 260.733444213867 TGS1 6387 // snRNA capping // inferred from mutant phenotype /// 7000 // nucleolus organization and biogenesis // inferred from mutant phenotype /// 7046 // ribosome biogenesis // inferred from mutant phenotype 5730 // nucleolus // inferred from direct assay 8173 // RNA methyltransferase activity // inferred from mutant phenotype /// 8173 // RNA methyltransferase activity // inferred from direct assay /// 8173 // RNA methyltransferase activity // inferred from sequence similarity 231.828582763672 114.183059692383 185.036575317383 289.638305664063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL157W /GEN=TGS1 /DB_XREF=GI:6325100 /SEG=NC_001148:+254813,255760 /DEF=TrimethylGuanosine Synthase /NOTE=Tgs1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11983179]; go_function: RNA methyltransferase activity [goid GO:0008173] [evidence IMP,ISS] [pmid 11983179]; go_process: snRNA capping [goid GO:0006387] [evidence IMP] [pmid 11983179] --- --- --- --- --- --- S0006078 // TGS1 SGDID:S0006078, Chr XVI from 254813-255760, Verified ORF // sgd // 11 // --- /// GENSCAN00000017068 // cdna:Genscan chromosome:SGD1:XVI:254813:255760:1 // ensembl // 11 // --- /// YPL157W // cdna:known chromosome:SGD1:XVI:254813:255760:1 gene:YPL157W // ensembl // 11 // --- --- No cerevisiae_gene 1.30947511893214 -2.03032379223533 1.09898461922036 -1.25287977453122 1.24936408708206 Max fold change below threshold 4 2.03032379223533 Max fold change at or above threshold 0.359120803396525 -1.22579238971899 -0.271258219943306 1.13792980626577 205.171630859375 74.2283700976896 0.361786713819933 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776647_at YKR095W-A.S1 Protein of unknown function, conserved in Ashbya gossypii 2.02927094663355 124.579925537109 279.616050720215 --- --- --- --- 247.62956237793 122.028831481934 127.131019592285 311.6025390625 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR095W-A /GEN=MLP1 /DB_XREF=GI:41629697 /SEG=NC_001143:+625504,625845 /DEF=Identified based on homology to Ashbya gossypii /NOTE=Ykr095w-ap --- --- --- --- --- --- S0028512 // PCC1 SGDID:S0028512, Chr XI from 625506-625543,625619-625847, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YKR095W-A // cdna:known chromosome:SGD1:XI:625506:625847:1 gene:YKR095W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.14649730441235 -2.02927094663355 1.17567245731022 -1.94782959479196 1.25834143577307 Max fold change below threshold 4 2.02927094663355 Max fold change at or above threshold 0.488191922380827 -0.858505688662999 -0.803799760677625 1.1741135269598 202.097988128662 93.2657263709282 0.461487653759087 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776356_at YNL042W.S1 Protein of unknown function, potential Cdc28p substrate; overproduction suppresses a pam1 slv3 double null mutation and confers resistance to methylmercury 2.02924977984701 1209.18792724609 665.476226806641 BOP3 46689 // response to mercury ion // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 641.948608398438 1115.70178222656 1302.67407226563 689.003845214844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL042W /GEN=YIP3 /DB_XREF=GI:6324286 /SEG=NC_001146:+548098,549288 /DEF=Protein of unknown function, potential Cdc28p substrate; overproduction suppresses a pam1 slv3 double null mutation /NOTE=Ynl042wp --- --- --- --- --- --- S0004987 // BOP3 SGDID:S0004987, Chr XIV from 548099-549289, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020001 // cdna:Genscan chromosome:SGD1:XIV:548099:549289:1 // ensembl // 11 // --- /// GENEFINDER00000020477 // cdna:GeneFinder chromosome:SGD1:XIV:548516:549289:1 // ensembl // 11 // --- /// YNL042W // cdna:known chromosome:SGD1:XIV:548099:549289:1 gene:YNL042W // ensembl // 11 // --- --- No cerevisiae_gene 1.52024180984296 1.73799236828329 1.16680132873334 2.02924977984701 1.07330062905472 Max fold change below threshold 4 2.02924977984701 Max fold change at or above threshold -0.912720113148103 0.551153449002198 1.12888845398642 -0.767321789840513 937.332077026367 323.629844870088 0.345267011342218 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770851_at YKR101W.S1 Protein involved in repression of transcription at the silent mating-type loci HML and HMR; recruitment to silent chromatin requires interactions with Orc1p and with Sir4p, through a common Sir1p domain; binds to centromeric chromatin 2.02823833945631 573.086090087891 980.3701171875 SIR1 6343 // establishment of chromatin silencing // inferred from mutant phenotype /// 30466 // chromatin silencing at silent mating-type cassette // inferred from genetic interaction 5677 // chromatin silencing complex // inferred from direct assay 3677 // DNA binding // traceable author statement /// 3682 // chromatin binding // inferred from physical interaction 925.391479492188 587.28125 558.890930175781 1035.34875488281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR101W /GEN=SIR1 /DB_XREF=GI:6322954 /SEG=NC_001143:+640104,642140 /DEF=repressor of silent mating loci /NOTE=Sir1p; go_component: chromatin silencing complex [goid GO:0005677] [evidence IDA] [pmid 8622770]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 11408576]; go_function: chromatin binding [goid GO:0003682] [evidence IPI] [pmid 12198162]; go_process: chromatin silencing at silent mating-type cassette (sensu Fungi) [goid GO:0030466] [evidence IGI] [pmid 397913]; go_process: establishment of chromatin silencing [goid GO:0006343] [evidence IMP] [pmid 2684414] --- --- --- --- --- --- S0001809 // SIR1 SGDID:S0001809, Chr XI from 640106-642142, Verified ORF // sgd // 11 // --- /// GENSCAN00000018502 // cdna:Genscan chromosome:SGD1:XI:640118:642142:1 // ensembl // 11 // --- /// GENEFINDER00000022955 // cdna:GeneFinder chromosome:SGD1:XI:640895:642142:1 // ensembl // 11 // --- /// YKR101W // cdna:known chromosome:SGD1:XI:640106:642142:1 gene:YKR101W // ensembl // 11 // --- --- No cerevisiae_gene -2.02823833945631 -1.57572113785718 1.03052386111399 -1.65576399531325 1.11882244199067 Max fold change below threshold 4 2.02823833945631 Max fold change at or above threshold 0.620277398614479 -0.790440825621388 -0.90889551310027 1.07905894010718 776.728103637695 239.672404937796 0.308566670647457 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777537_at SPBC1604.07.S1 --- 2.02788815517384 --- --- --- --- 11.8470106124878 6.56637620925903 14.4807443618774 11.3663806915283 0.303710997104645 0.398925989866257 0.0805663987994194 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1604.07 /GEN=atp4 /DEF=F0-ATPase --- --- --- --- --- --- SPBC1604.07 // |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.20289389998481 -1.8041930944777 -2.02788815517384 1.22231209505404 -1.0422852211274 Max fold change below threshold 4 2.02788815517384 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775860_at YPL022W.S1 Single-stranded DNA endonuclease (with Rad10p), cleaves single-stranded DNA during nucleotide excision repair and double-strand break repair; subunit of Nucleotide Excision Repair Factor 1 (NEF1); homolog of human ERCC1 protein 2.02775588956866 600.896667480469 564.798385620117 RAD1 735 // removal of nonhomologous ends // traceable author statement /// 736 // double-strand break repair via single-strand annealing, removal of nonhomologous ends // traceable author statement /// 6296 // nucleotide-excision repair, DNA incision, 5'-to lesion // traceable author statement /// 6310 // DNA recombination // inferred from mutant phenotype 110 // nucleotide excision repair factor 1 complex // traceable author statement 14 // single-stranded DNA specific endodeoxyribonuclease activity // traceable author statement 510.565643310547 551.878601074219 649.914733886719 619.031127929688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL022W /GEN=RAD1 /DB_XREF=GI:6325235 /SEG=NC_001148:+506693,509995 /DEF=Single-stranded DNA endonuclease (with Rad10p), cleaves single-stranded DNA during nucleotide excision repair and double-strand break repair; subunit of Nucleotide Excision Repair Factor 1 (NEF1); homolog of human ERCC1 protein /NOTE=Rad1p; go_component: nucleotide excision repair factor 1 complex [goid GO:0000110] [evidence TAS] [pmid 10915862]; go_function: single-stranded DNA specific endodeoxyribonuclease activity [goid GO:0000014] [evidence TAS] [pmid 10915862]; go_process: double-strand break repair via single-strand annealing, removal of nonhomologous ends [goid GO:0000736] [evidence TAS] [pmid 10357855]; go_process: nucleotide-excision repair, DNA incision, 5'-to lesion [goid GO:0006296] [evidence TAS] [pmid 10915862]; go_process: removal of nonhomologous ends [goid GO:0000735] [evidence TAS] [pmid 10357855] --- --- --- --- --- --- S0005943 // RAD1 SGDID:S0005943, Chr XVI from 506695-509997, Verified ORF // sgd // 11 // --- /// GENSCAN00000017169 // cdna:Genscan chromosome:SGD1:XVI:506695:509997:1 // ensembl // 11 // --- /// GENEFINDER00000020862 // cdna:GeneFinder chromosome:SGD1:XVI:506695:509997:1 // ensembl // 11 // --- /// YPL022W // cdna:known chromosome:SGD1:XVI:506695:509997:1 gene:YPL022W // ensembl // 11 // --- --- No cerevisiae_gene -1.15274557661102 1.08091605517323 2.02775588956866 1.2729308021445 1.21244180065827 Max fold change below threshold 4 2.02775588956866 Max fold change at or above threshold -1.14330534747315 -0.489845262952746 1.06082317381657 0.572327436609327 582.847526550293 63.2218535490089 0.108470655993345 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770820_at YOL097C.S1 Cytoplasmic tryptophanyl-tRNA synthetase, aminoacylates tryptophanyl-tRNA 2.02775044284177 237.425987243652 420.525009155273 WRS1 6436 // tryptophanyl-tRNA aminoacylation // traceable author statement 5737 // cytoplasm // traceable author statement 4830 // tryptophan-tRNA ligase activity // inferred from direct assay 391.424926757813 193.034072875977 281.817901611328 449.625091552734 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL097C /GEN=WRS1 /DB_XREF=GI:6324475 /SEG=NC_001147:-136526,137824 /DEF=W = IUPAC for tryptophan, RS = convention for aminoacyl-tRNA synthetases /NOTE=Wrs1p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 10950302]; go_function: tryptophan-tRNA ligase activity [goid GO:0004830] [evidence IDA] [pmid 9046085]; go_process: tryptophanyl-tRNA aminoacylation [goid GO:0006436] [evidence TAS] [pmid 10950302] --- --- --- --- --- --- S0005457 // WRS1 SGDID:S0005457, Chr XV from 137824-136526, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017388 // cdna:Genscan chromosome:SGD1:XV:136526:137824:-1 // ensembl // 10 // --- /// GENEFINDER00000022888 // cdna:GeneFinder chromosome:SGD1:XV:136526:137824:-1 // ensembl // 10 // --- /// YOL097C // cdna:known chromosome:SGD1:XV:136526:137824:-1 gene:YOL097C // ensembl // 10 // --- --- No cerevisiae_gene 1.87092229568636 -2.02775044284177 1.09244787159295 -1.38892854045039 1.1486879368593 Max fold change below threshold 4 2.02775044284177 Max fold change at or above threshold 0.546596487576056 -1.18984444394833 -0.412752802590005 1.05600075896228 328.975498199463 114.251426743133 0.347294638562598 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779238_at YDR037W.S1 Lysyl-tRNA synthetase; also identified as a negative regulator of general control of amino acid biosynthesis 2.02757147274691 1574.62738037109 1884.74005126953 KRS1 6430 // lysyl-tRNA aminoacylation // inferred from direct assay 5737 // cytoplasm // traceable author statement 4824 // lysine-tRNA ligase activity // inferred from direct assay 1886.54748535156 1519.15356445313 1630.10119628906 1882.9326171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR037W /GEN=KRS1 /DB_XREF=GI:6320242 /SEG=NC_001136:+525435,527210 /DEF=lysyl-tRNA synthetase /NOTE=Krs1p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 2668951]; go_function: lysine-tRNA ligase activity [goid GO:0004824] [evidence IDA] [pmid 2903861]; go_process: lysyl-tRNA aminoacylation [goid GO:0006430] [evidence IDA] [pmid 7628447] --- --- --- --- --- --- S0002444 // KRS1 SGDID:S0002444, Chr IV from 525436-527211, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023702 // cdna:GeneFinder chromosome:SGD1:IV:525436:527211:1 // ensembl // 11 // --- /// GENSCAN00000025125 // cdna:Genscan chromosome:SGD1:IV:525436:527211:1 // ensembl // 11 // --- /// YDR037W // cdna:known chromosome:SGD1:IV:525436:527211:1 gene:YDR037W // ensembl // 11 // --- --- No cerevisiae_gene 2.02757147274691 -1.2418411999255 -1.34852678223957 -1.15731924474769 -1.00191980750191 Max fold change below threshold 4 2.02757147274691 Max fold change at or above threshold 0.849335883187628 -1.13991148232258 -0.539187649441727 0.829763248576682 1729.68371582031 184.689912008106 0.106776695831073 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773068_at SPAC16E8.15.S1 --- 2.02752700240677 --- --- --- --- 0.362391531467438 0.47604301571846 0.622255146503448 0.373437613248825 0.953857004642487 0.919434010982513 0.943848013877869 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16E8.15 /GEN=tif45 /DEF=translation initiation factor --- --- --- --- --- --- SPAC16E8.15 // |tif45|tif1|translation initiation factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.7216699032767 1.31361517690773 2.02752700240677 1.71707971205547 1.03048107039549 Max fold change below threshold 0 2.02752700240677 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770848_at YKL191W.S1 Protein required, along with Dph1p, Kti11p, Jjj3p, and Dph5p, for synthesis of diphthamide, which is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); may act in a complex with Dph1p and Kti11p 2.02681787239944 804.208251953125 1460.34558105469 DPH2 17183 // peptidyl-diphthamide biosynthesis from peptidyl-histidine // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 1507.44641113281 743.750305175781 864.666198730469 1413.24475097656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL191W /GEN=DPH2 /DB_XREF=GI:6322657 /SEG=NC_001143:+81040,82644 /DEF=Protein of unknown function, involved in diphtheria toxicity and diphthamide biosynthesis, not essential for viability /NOTE=Dph2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: peptidyl-diphthamide biosynthesis from peptidyl-histidine [goid GO:0017183] [evidence IMP] [pmid 8406038] --- --- --- --- --- --- S0001674 // DPH2 SGDID:S0001674, Chr XI from 81040-82644, Verified ORF // sgd // 11 // --- /// GENSCAN00000018274 // cdna:Genscan chromosome:SGD1:XI:81040:82644:1 // ensembl // 11 // --- /// GENEFINDER00000023035 // cdna:GeneFinder chromosome:SGD1:XI:81040:82644:1 // ensembl // 11 // --- /// YKL191W // cdna:known chromosome:SGD1:XI:81040:82644:1 gene:YKL191W // ensembl // 11 // --- --- No cerevisiae_gene -1.25481055552773 -2.02681787239944 -1.21987212927779 -1.74338538194981 -1.06665629579813 Max fold change below threshold 4 2.02681787239944 Max fold change at or above threshold 0.977119313428924 -1.01190758082641 -0.696985241499045 0.731773508896533 1132.27691650391 383.954640413723 0.33909959199667 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777345_at YKL197C.S1 AAA-family ATPase peroxin required for peroxisome biogenesis, contains two 230 amino acid ATP-binding AAA cassettes, upregulated in anaerobiosis; Pex1p and Pex6p interact via their N-terminal AAA-cassettes 2.02669540503292 165.532730102539 150.184768676758 PEX1 7031 // peroxisome organization and biogenesis // traceable author statement 5777 // peroxisome // inferred from direct assay 16887 // ATPase activity // inferred from sequence similarity 129.581420898438 118.325485229492 212.739974975586 170.788116455078 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL197C /GEN=PEX1 /DB_XREF=GI:6322651 /SEG=NC_001143:-70739,73870 /DEF=member of the AAA-protein family /NOTE=Pex1p; go_component: peroxisome [goid GO:0005777] [evidence IDA] [pmid 14562095]; go_function: ATPase activity [goid GO:0016887] [evidence ISS] [pmid 1825027]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence TAS] --- --- --- --- --- --- S0001680 // PEX1 SGDID:S0001680, Chr XI from 73870-70739, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023015 // cdna:GeneFinder chromosome:SGD1:XI:70283:73870:-1 // ensembl // 9 // --- /// GENSCAN00000018269 // cdna:Genscan chromosome:SGD1:XI:70739:73870:-1 // ensembl // 11 // --- /// YKL197C // cdna:known chromosome:SGD1:XI:70739:73870:-1 gene:YKL197C // ensembl // 11 // --- --- No cerevisiae_gene -1.13998038920495 -1.095126892124 2.02669540503292 1.64174750902235 1.31799848520674 Max fold change below threshold 4 2.02669540503292 Max fold change at or above threshold -0.657932395108935 -0.919825760182764 1.27692883744278 0.300829317848917 157.858749389648 42.9790791598413 0.272262888981557 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777109_at YGL227W.S1 Protein involved in proteasome-dependent catabolite degradation of fructose-1,6-bisphosphatase (FBPase); shifts the balance of nitrogen metabolism toward the production of glutamate; localized to the nucleus and the cytoplasm 2.02666761312557 745.665252685547 589.353210449219 VID30 6808 // regulation of nitrogen utilization // inferred from mutant phenotype /// 7039 // vacuolar protein catabolism // inferred from mutant phenotype /// 43161 // proteasomal ubiquitin-dependent protein catabolism // inferred from mutant phenotype /// 45721 // negative regulation of gluconeogenesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 582.030883789063 685.4267578125 805.903747558594 596.675537109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL227W /GEN=VID30 /DB_XREF=GI:6321210 /SEG=NC_001139:+69670,72546 /DEF=vacuole import and degradation (VID); TOR inhibitor (TIN) /NOTE=Vid30p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: negative regulation of gluconeogenesis [goid GO:0045721] [evidence IMP] [pmid 12686616]; go_process: regulation of nitrogen utilization [goid GO:0006808] [evidence IMP] [pmid 11356843] --- --- --- --- --- --- S0003196 // VID30 SGDID:S0003196, Chr VII from 69671-72547, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021425 // cdna:GeneFinder chromosome:SGD1:VII:69851:72547:1 // ensembl // 11 // --- /// GENSCAN00000019179 // cdna:Genscan chromosome:SGD1:VII:70739:72547:1 // ensembl // 11 // --- /// YGL227W // cdna:known chromosome:SGD1:VII:69671:72547:1 gene:YGL227W // ensembl // 11 // --- --- No cerevisiae_gene -2.02666761312557 1.17764671412335 1.1160269186411 1.38464086701397 1.0251612993884 Max fold change below threshold 4 2.02666761312557 Max fold change at or above threshold -0.830264694349895 0.174035762717228 1.34424779497536 -0.688018863342697 667.509231567383 102.953128514336 0.154234763574117 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778700_at YGR029W.S1 Flavin-linked sulfhydryl oxidase localized to the mitochondrial intermembrane space, has a role in the maturation of cytosolic iron-sulfur proteins; ortholog of human hepatopoietin (ALR) 2.0266597421305 403.262603759766 220.164222717285 ERV1 6879 // iron ion homeostasis // inferred from direct assay /// 7005 // mitochondrion organization and biogenesis // traceable author statement 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay /// 5758 // mitochondrial intermembrane space // inferred from direct assay 16972 // thiol oxidase activity // traceable author statement 219.653137207031 361.363037109375 445.162170410156 220.675308227539 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR029W /GEN=ERV1 /DB_XREF=GI:6681846 /SEG=NC_001139:+543555,544207 /DEF=Flavin-linked sulfhydryl oxidase localized to the mitochondrial intermembrane space, has a role in the maturation of cytosolic iron-sulfur proteins; ortholog of human hepatopoietin (ALR) /NOTE=Erv1p; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence IDA] [pmid 11493598]; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 11313344]; go_function: thiol oxidase activity [goid GO:0016972] [evidence TAS] [pmid 11313344]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IDA] [pmid 11493598]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence TAS] [pmid 11313344] --- --- --- --- --- --- S0003261 // ERV1 SGDID:S0003261, Chr VII from 543557-543642,543726-544209, intron sequence removed, Verified ORF // sgd // 11 // --- /// YGR029W // cdna:known chromosome:SGD1:VII:543557:544209:1 gene:YGR029W // ensembl // 11 // --- --- No cerevisiae_gene 1.59084924767915 1.64515308865713 1.35746778715221 2.0266597421305 1.00465356895652 Max fold change below threshold 4 2.0266597421305 Max fold change at or above threshold -0.828546400392319 0.446848726859692 1.20104449125872 -0.819346817726096 311.713413238525 111.110585946548 0.356451090096421 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775233_at YPL266W.S1 Essential 18S rRNA dimethylase, responsible for conserved m6(2)Am6(2)A dimethylation in 3'-terminal loop of 18 S rRNA, part of 90S and 40S pre-particles in nucleolus, involved in pre-ribosomal RNA processing 2.02595782457173 315.59538269043 593.136840820313 DIM1 154 // rRNA modification // traceable author statement /// 6365 // 35S primary transcript processing // traceable author statement 5730 // nucleolus // traceable author statement 179 // rRNA (adenine-N6,N6-)-dimethyltransferase activity // traceable author statement 609.39794921875 300.794982910156 330.395782470703 576.875732421875 0.000244141003349796 0.00292969006113708 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL266W /GEN=DIM1 /DB_XREF=GI:6324989 /SEG=NC_001148:+39121,40077 /DEF=Essential 18S rRNA dimethylase, responsible for conserved m6(2)Am6(2)A dimethylation in 3'-terminal loop of 18 S rRNA, part of 90S and 40S pre-particles in nucleolus, involved in pre-ribosomal RNA processing /NOTE=Dim1p; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 10690410]; go_function: rRNA (adenine-N6,N6-)-dimethyltransferase activity [goid GO:0000179] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: rRNA modification [goid GO:0000154] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0006187 // DIM1 SGDID:S0006187, Chr XVI from 39121-40077, Verified ORF // sgd // 11 // --- /// GENSCAN00000016979 // cdna:Genscan chromosome:SGD1:XVI:39121:40077:1 // ensembl // 11 // --- /// GENEFINDER00000020994 // cdna:GeneFinder chromosome:SGD1:XVI:39121:40077:1 // ensembl // 11 // --- /// YPL266W // cdna:known chromosome:SGD1:XVI:39121:40077:1 gene:YPL266W // ensembl // 11 // --- --- No cerevisiae_gene 1.25145767747529 -2.02595782457173 -1.39629495116578 -1.8444483300049 -1.0563764689153 Max fold change below threshold 4 2.02595782457173 Max fold change at or above threshold 0.961489988229522 -0.952430837960358 -0.768850014261629 0.759790863992465 454.366111755371 161.241239494186 0.354870742607226 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776776_at YBR073W.S1 DNA-dependent ATPase, stimulates strand exchange by modifying the topology of double-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during mitosis and meiosis; proposed to be involved in crossover interference 2.02581423164349 296.205093383789 352.174224853516 RDH54 727 // double-strand break repair via break-induced replication // traceable author statement /// 7131 // meiotic recombination // inferred from mutant phenotype /// 7131 // meiotic recombination // inferred from genetic interaction /// 30491 // heteroduplex formation // inferred from direct assay 5634 // nucleus // inferred from curator 3916 // DNA topoisomerase activity // inferred from direct assay /// 8094 // DNA-dependent ATPase activity // inferred from direct assay 336.208038330078 306.509460449219 285.900726318359 368.140411376953 0.000732421991415322 0.00415039015933871 0.00292969006113708 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR073W /GEN=RDH54 /DB_XREF=GI:37362617 /SEG=NC_001134:+383172,385946 /DEF=genetic interaction with DMC1 /NOTE=Rdh54p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 9409819]; go_function: DNA supercoiling activity [goid GO:0009387] [evidence IDA] [pmid 10970884]; go_function: DNA-dependent ATPase activity [goid GO:0008094] [evidence IDA] [pmid 10970884]; go_process: double-strand break repair via break-induced replication [goid GO:0000727] [evidence TAS] [pmid 11459961]; go_process: heteroduplex formation [goid GO:0030491] [evidence IDA] [pmid 10970884]; go_process: meiotic recombination [goid GO:0007131] [evidence IGI,IMP] [pmid 9409820] --- --- --- --- --- --- S0000277 // RDH54 SGDID:S0000277, Chr II from 383209-385983, Verified ORF // sgd // 11 // --- /// GENSCAN00000021197 // cdna:Genscan chromosome:SGD1:II:383107:385983:1 // ensembl // 11 // --- /// GENEFINDER00000022295 // cdna:GeneFinder chromosome:SGD1:II:383107:385983:1 // ensembl // 11 // --- /// YBR073W // cdna:known chromosome:SGD1:II:383209:385983:1 gene:YBR073W // ensembl // 11 // --- --- No cerevisiae_gene -2.02581423164349 -1.09689285882835 -1.01892587600305 -1.17596077022798 1.09497801779363 Max fold change below threshold 4 2.02581423164349 Max fold change at or above threshold 0.335280951416135 -0.493230719952523 -1.06815982356307 1.22610959209946 324.189659118652 35.8456964544614 0.110570141416331 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773886_at YDL127W.S1 G1 cyclin, associates with Pho85p cyclin-dependent kinase (Cdk) to contribute to entry into the mitotic cell cycle, essential for cell morphogenesis; localizes to sites of polarized cell growth 2.02572200033547 76.3358955383301 109.51256942749 PCL2 7049 // cell cycle // traceable author statement 307 // cyclin-dependent protein kinase holoenzyme complex // traceable author statement 16538 // cyclin-dependent protein kinase regulator activity // traceable author statement 117.532775878906 82.446174621582 70.2256164550781 101.492362976074 0.00122069998178631 0.00805663969367743 0.014160200022161 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL127W /GEN=PCL2 /DB_XREF=GI:42742057 /SEG=NC_001136:+234927,235853 /DEF=Interacts with cyclin-dependent kinase PHO85 to form kinase complex with G1-periodic activity involved in cell cycle progression /NOTE=Pcl2p; go_component: cyclin-dependent protein kinase holoenzyme complex [goid GO:0000307] [evidence TAS] [pmid 11602261]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS] [pmid 11602261]; go_process: cell cycle [goid GO:0007049] [evidence TAS] [pmid 11602261] --- --- --- --- --- --- S0002285 // PCL2 SGDID:S0002285, Chr IV from 234927-235853, Verified ORF // sgd // 11 // --- /// YDL127W // cdna:known chromosome:SGD1:IV:234927:235853:1 gene:YDL127W // ensembl // 11 // --- --- No cerevisiae_gene 2.02572200033547 -1.42556979045259 -1.42309769733594 -1.67364534213935 -1.15804551625834 Max fold change below threshold 4 2.02572200033547 Max fold change at or above threshold 1.18033708437039 -0.502575063744591 -1.08872832619152 0.410966305565723 92.9242324829102 20.848742043145 0.224362811357945 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1772731_at YMR224C.S1 Subunit of a complex with Rad50p and Xrs2p (RMX complex) that functions in repair of DNA double-strand breaks and in telomere stability, exhibits nuclease activity that appears to be required for RMX function; widely conserved 2.0253833773607 162.031089782715 326.624206542969 MRE11 706 // meiotic DNA double-strand break processing // traceable author statement /// 727 // double-strand break repair via break-induced replication // traceable author statement /// 6281 // DNA repair // inferred from mutant phenotype /// 6303 // double-strand break repair via nonhomologous end-joining // inferred from mutant phenotype /// 42138 // meiotic DNA double-strand break formation // traceable author statement 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 30870 // Mre11 complex // inferred from physical interaction 4519 // endonuclease activity // inferred from direct assay /// 5515 // protein binding // inferred from physical interaction /// 8408 // 3'-5' exonuclease activity // inferred from direct assay /// 42162 // telomeric DNA binding // inferred from direct assay 297.848022460938 147.057601928711 177.004577636719 355.400390625 0.00195312988944352 0.0239257998764515 0.0239257998764515 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR224C /GEN=MRE11 /DB_XREF=GI:6323880 /SEG=NC_001145:-718574,720652 /DEF=Subunit of a complex with Rad50p and Xrs2p (RMX complex) that functions in repair of DNA double-strand breaks and in telomere stability, exhibits nuclease activity that appears to be required for RMX function; widely conserved /NOTE=Mre11p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9845372]; go_function: 3'-5' exonuclease activity [goid GO:0008408] [evidence IDA] [pmid 11454871]; go_function: endonuclease activity [goid GO:0004519] [evidence IDA] [pmid 9858579]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 9845372]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 7789757]; go_process: double-strand break repair via break-induced replication [goid GO:0000727] [evidence TAS] [pmid 11459961]; go_process: double-strand break repair via nonhomologous end-joining [goid GO:0006303] [evidence IMP] [pmid 12399380]; go_process: meiotic DNA double-strand break formation [goid GO:0042138] [evidence TAS] [pmid 9334324]; go_process: meiotic DNA double-strand break processing [goid GO:0000706] [evidence TAS] [pmid 9334324] --- --- --- --- --- --- S0004837 // MRE11 SGDID:S0004837, Chr XIII from 720652-718574, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018905 // cdna:Genscan chromosome:SGD1:XIII:718574:720652:-1 // ensembl // 11 // --- /// GENEFINDER00000021772 // cdna:GeneFinder chromosome:SGD1:XIII:718574:720052:-1 // ensembl // 11 // --- /// YMR224C // cdna:known chromosome:SGD1:XIII:718574:720652:-1 gene:YMR224C // ensembl // 11 // --- --- No cerevisiae_gene -1.57135463730216 -2.0253833773607 1.18610907670624 -1.68271367010765 1.19322729655393 Max fold change below threshold 4 2.0253833773607 Max fold change at or above threshold 0.542528103332859 -0.986012044694914 -0.682443989641182 1.12592793100324 244.327648162842 98.6499574295034 0.403760925835762 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1777355_at YDR138W.S1 Subunit of THO/TREX, related complexes that couple transcription elongation with mitotic recombination and elongation with mRNA metabolism and export, subunit of an RNA Pol II complex; regulates lifespan; similar to Top1p 2.02535948759161 113.080352783203 253.892234802246 HPR1 6310 // DNA recombination // inferred from mutant phenotype /// 6368 // RNA elongation from RNA polymerase II promoter // inferred from mutant phenotype /// 6406 // mRNA-nucleus export // inferred from genetic interaction /// 6406 // mRNA-nucleus export // inferred from mutant phenotype 347 // THO complex // inferred from mutant phenotype /// 347 // THO complex // inferred from physical interaction 3676 // nucleic acid binding // inferred from direct assay 225.389511108398 114.876998901367 111.283706665039 282.394958496094 0.000244141003349796 0.00415039015933871 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR138W /GEN=HPR1 /DB_XREF=GI:6320342 /SEG=NC_001136:+730572,732830 /DEF=Subunit of THO/TREX, related complexes that couple transcription elongation with mitotic recombination and elongation with mRNA metabolism and export, subunit of an RNA Pol II complex; regulates lifespan; similar to Top1p /NOTE=Hpr1p; go_component: THO complex [goid GO:0000347] [evidence IMP,IPI] [pmid 11060033]; go_function: nucleic acid binding [goid GO:0003676] [evidence IDA] [pmid 12093753]; go_process: DNA recombination [goid GO:0006310] [evidence IMP] [pmid 11060033]; go_process: RNA elongation from Pol II promoter [goid GO:0006368] [evidence IMP] [pmid 12093753]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 11979277]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IGI] [pmid 12417727] --- --- --- --- --- --- S0002545 // HPR1 SGDID:S0002545, Chr IV from 730573-732831, Verified ORF // sgd // 11 // --- /// GENSCAN00000025198 // cdna:Genscan chromosome:SGD1:IV:730573:732831:1 // ensembl // 11 // --- /// GENEFINDER00000023488 // cdna:GeneFinder chromosome:SGD1:IV:731029:732831:1 // ensembl // 11 // --- /// YDR138W // cdna:known chromosome:SGD1:IV:730573:732831:1 gene:YDR138W // ensembl // 11 // --- --- No cerevisiae_gene -1.12620200692641 -1.96200730576115 1.26710534680258 -2.02535948759161 1.25291969935672 Max fold change below threshold 4 2.02535948759161 Max fold change at or above threshold 0.495450991154036 -0.811215589968261 -0.853701592572385 1.16946619138661 183.486293792725 84.5759077362428 0.460938558341497 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777332_at YLR015W.S1 Subunit of the COMPASS (Set1C) complex, which methylates Rad6p ubiquitinated histone H3 on lysine 4 and is required in transcriptional silencing near telomeres; has similarity to the trithorax-group protein ASH2L 2.02502451994507 162.20288848877 226.96817779541 BRE2 723 // telomere maintenance // inferred from mutant phenotype /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 6350 // transcription // inferred from sequence similarity /// 16571 // histone methylation // inferred from direct assay /// 16571 // histone methylation // inferred from mutant phenotype 48188 // COMPASS complex // inferred from physical interaction 30528 // transcription regulator activity // inferred from sequence similarity /// 42800 // histone lysine N-methyltransferase activity (H3-K4 specific) // inferred from mutant phenotype /// 42800 // histone lysine N-methyltransferase activity (H3-K4 specific) // inferred from direct assay 206.526931762695 187.320098876953 137.085678100586 247.409423828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR015W /GEN=BRE2 /DB_XREF=GI:6323043 /SEG=NC_001144:+175226,176743 /DEF=Subunit of the COMPASS complex, which methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres; has similarity to ASH2L member of trithorax proteins /NOTE=Bre2p; go_component: COMPASS complex [goid GO:0048188] [evidence IPI] [pmid 11805083]; go_component: nuclear chromatin [goid GO:0000790] [evidence IMP] [pmid 11687631]; go_function: chromatin binding [goid GO:0003682] [evidence IMP] [pmid 11687631]; go_function: histone lysine N-methyltransferase activity (H3-K4 specific) [goid GO:0042800] [evidence IDA] [pmid 11742990]; go_function: transcription regulator activity [goid GO:0030528] [evidence ISS] [pmid 11169758]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 11687631]; go_process: histone methylation [goid GO:0016571] [evidence IDA] [pmid 11742990]; go_process: transcription [goid GO:0006350] [evidence ISS] [pmid 11169758] --- --- --- --- --- --- S0004005 // BRE2 SGDID:S0004005, Chr XII from 175226-176743, Verified ORF // sgd // 11 // --- /// GENSCAN00000017764 // cdna:Genscan chromosome:SGD1:XII:175226:176743:1 // ensembl // 11 // --- /// GENEFINDER00000024828 // cdna:GeneFinder chromosome:SGD1:XII:175226:176743:1 // ensembl // 11 // --- /// YLR015W // cdna:known chromosome:SGD1:XII:175226:176743:1 gene:YLR015W // ensembl // 11 // --- --- No cerevisiae_gene -2.02502451994507 -1.10253482141475 1.2342551863328 -1.50655367230381 1.19795235283118 Max fold change below threshold 4 2.02502451994507 Max fold change at or above threshold 0.260748696745291 -0.158645781462652 -1.25554909784555 1.15344618256291 194.58553314209 45.7965802692784 0.235354496964771 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771596_at YOR298C-A.S1 Transcriptional coactivator that bridges the DNA-binding region of Gcn4p and TATA-binding protein Spt15p; suppressor of frameshift mutations 2.02477865596858 7850.93286132813 4330.27197265625 MBF1 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from curator /// 5739 // mitochondrion // inferred from direct assay 3713 // transcription coactivator activity // inferred from direct assay 4901.08837890625 9923.619140625 5778.24658203125 3759.45556640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR298C-A /GEN=MBF1 /DB_XREF=GI:42742310 /SEG=NC_001147:-877227,877682 /DEF=bridges the DNA-binding region of GCN4 and TBP; similar to multiprotein bridging factor 1 of Bombyx mori /NOTE=Mbf1p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 9710580]; go_function: transcription coactivator activity [goid GO:0003713] [evidence IDA] [pmid 9710580]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IDA] [pmid 9710580] --- --- --- --- --- --- S0007253 // MBF1 SGDID:S0007253, Chr XV from 877682-877227, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017751 // cdna:Genscan chromosome:SGD1:XV:877227:877682:-1 // ensembl // 11 // --- /// GENEFINDER00000022598 // cdna:GeneFinder chromosome:SGD1:XV:877227:877682:-1 // ensembl // 11 // --- /// YOR298C-A // cdna:known chromosome:SGD1:XV:877227:877682:-1 gene:YOR298C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.0828973932493 2.02477865596858 -1.06294511637994 1.17897212523247 -1.30366971821702 Max fold change below threshold 4 2.02477865596858 Max fold change at or above threshold -0.442908369455583 1.42720063219425 -0.116303809053905 -0.867988453684766 6090.60241699219 2685.68877925715 0.440956180584754 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774594_at YKL025C.S1 Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex, which acts to control poly(A) tail length and regulate the stoichiometry and activity of postreplication repair complexes 2.0247451237127 704.078796386719 1436.91052246094 PAN3 6281 // DNA repair // inferred from direct assay /// 6301 // postreplication repair // inferred from genetic interaction /// 6301 // postreplication repair // inferred from physical interaction /// 6397 // mRNA processing // inferred from mutant phenotype /// 6397 // mRNA processing // inferred from physical interaction /// 31124 // mRNA 3'-end processing // inferred from mutant phenotype /// 31124 // mRNA 3'-end processing // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay /// 31251 // PAN complex // inferred from direct assay 4535 // poly(A)-specific ribonuclease activity // inferred from direct assay 1339.48852539063 746.598510742188 661.55908203125 1534.33251953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL025C /GEN=PAN3 /DB_XREF=GI:6322827 /SEG=NC_001143:-389883,391922 /DEF=Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex, which acts to control poly(A) tail length and regulate the stoichiometry and activity of postreplication repair complexes /NOTE=Pan3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: poly(A)-specific ribonuclease activity [goid GO:0004535] [evidence IDA] [pmid 8816488]; go_process: DNA repair [goid GO:0006281] [evidence IDA] [pmid 11953437]; go_process: postreplication repair [goid GO:0006301] [evidence IGI,IPI] [pmid 11953437] --- --- --- hanks // 1.6.2 // AGC group; AGC VI phosphorylate ribosomal protein S6; RSK1N // 3.0E-7 --- --- S0001508 // PAN3 SGDID:S0001508, Chr XI from 391922-389883, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018398 // cdna:Genscan chromosome:SGD1:XI:389883:391922:-1 // ensembl // 11 // --- /// GENEFINDER00000023104 // cdna:GeneFinder chromosome:SGD1:XI:389883:391922:-1 // ensembl // 11 // --- /// YKL025C // cdna:known chromosome:SGD1:XI:389883:391922:-1 gene:YKL025C // ensembl // 11 // --- --- No cerevisiae_gene -1.34641189632824 -1.79412161438556 -1.19960219842545 -2.0247451237127 1.14546148805851 Max fold change below threshold 4 2.0247451237127 Max fold change at or above threshold 0.622799880573727 -0.749914805648823 -0.946806083652044 1.07392100872714 1070.49465942383 431.910593365879 0.403468237383217 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780199_at YGL030W.S1 Protein component of the large (60S) ribosomal subunit, has similarity to rat L30 ribosomal protein; involved in pre-rRNA processing in the nucleolus; autoregulates splicing of its transcript 2.02445455559623 3594.49267578125 6158.365234375 RPL30 6364 // rRNA processing // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement /// 16478 // negative regulation of translation // traceable author statement /// 48025 // negative regulation of nuclear mRNA splicing, via spliceosome // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement /// 3735 // structural constituent of ribosome // inferred from direct assay 6995.6416015625 3733.41674804688 3455.56860351563 5321.0888671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL030W /GEN=RPL30 /DB_XREF=GI:6321408 /SEG=NC_001139:+439094,439641 /DEF=Protein component of the large (60S) ribosomal subunit, has similarity to rat L30 ribosomal protein; involved in pre-rRNA processing in the nucleolus; autoregulates splicing of its transcript /NOTE=Rpl30p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11142377]; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 9121443]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: negative regulation of nuclear mRNA splicing, via spliceosome [goid GO:0048025] [evidence IMP] [pmid 9121443]; go_process: negative regulation of translation [goid GO:0016478] [evidence TAS] [pmid 9121443]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9559554]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 9121443] --- --- --- --- --- --- S0002998 // RPL30 SGDID:S0002998, Chr VII from 439096-439098,439329-439643, intron sequence removed, Verified ORF // sgd // 11 // --- /// YGL030W // cdna:known chromosome:SGD1:VII:439096:439643:1 gene:YGL030W // ensembl // 11 // --- --- No cerevisiae_gene -1.08128289133567 -1.87379070531632 -1.69278342987793 -2.02445455559623 -1.31470114034387 Max fold change below threshold 4 2.02445455559623 Max fold change at or above threshold 1.29660481678732 -0.699332903539443 -0.869329644136609 0.272057730888731 4876.42895507813 1634.43218708325 0.335169896278549 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769420_at YMR076C.S1 Protein required for establishment and maintenance of sister chromatid condensation and cohesion, colocalizes with cohesin on chromosomes in an interdependent manner, may function as a protein-protein interaction scaffold 2.02444123398422 330.321517944336 493.964859008789 PDS5 7064 // mitotic sister chromatid cohesion // inferred from mutant phenotype /// 7076 // mitotic chromosome condensation // inferred from mutant phenotype 794 // condensed nuclear chromosome // inferred from direct assay 5198 // structural molecule activity // inferred from sequence similarity 464.969879150391 379.337524414063 281.305511474609 522.959838867188 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR076C /GEN=PDS5 /DB_XREF=GI:6323722 /SEG=NC_001145:-416195,420028 /DEF=Precocious Dissociation of Sister chromatids /NOTE=Pds5p; go_component: condensed nuclear chromosome [goid GO:0000794] [evidence IDA] [pmid 11062262]; go_function: structural molecule activity [goid GO:0005198] [evidence ISS] [pmid 11137006]; go_process: mitotic chromosome condensation [goid GO:0007076] [evidence IMP] [pmid 11062262]; go_process: mitotic sister chromatid cohesion [goid GO:0007064] [evidence IMP] [pmid 11062262] --- --- --- --- --- --- S0004681 // PDS5 SGDID:S0004681, Chr XIII from 420028-416195, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018774 // cdna:Genscan chromosome:SGD1:XIII:416195:420028:-1 // ensembl // 10 // --- /// GENEFINDER00000021921 // cdna:GeneFinder chromosome:SGD1:XIII:416195:420028:-1 // ensembl // 10 // --- /// YMR076C // cdna:known chromosome:SGD1:XIII:416195:420028:-1 gene:YMR076C // ensembl // 10 // --- --- No cerevisiae_gene 1.19429017848558 -1.22574185052902 -2.02444123398422 -1.65289999727701 1.12471766950315 Max fold change below threshold 4 2.02444123398422 Max fold change at or above threshold 0.501667201912262 -0.311538078330951 -1.24249636857886 1.05236724499755 412.143188476563 105.302261085562 0.255499214908291 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778099_at YHR064C.S1 Hsp70 protein that interacts with Zuo1p (a DnaJ homolog) to form a ribosome-associated complex that is bound to the ribosome via the Zuo1p subunit; also involved in pleiotropic drug resistance via sequential activation of PDR1 and PDR5 2.02426363340893 793.900604248047 844.332122802734 SSZ1 6412 // protein biosynthesis // inferred from genetic interaction /// 6412 // protein biosynthesis // inferred from physical interaction /// 6412 // protein biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 51082 // unfolded protein binding // inferred from genetic interaction /// 51082 // unfolded protein binding // inferred from physical interaction /// 51082 // unfolded protein binding // inferred from sequence similarity 797.544128417969 613.906616210938 973.894592285156 891.1201171875 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR064C /GEN=SSZ1 /DB_XREF=GI:37362658 /SEG=NC_001140:-225526,227142 /DEF=DnaK homolog, interacts with Zuo1p (DnaJ homolog) to form a ribosome-associated complex (RAC) that is bound to the ribosome via the Zuo1p subunit /NOTE=Ssz1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10792726]; go_function: chaperone activity [goid GO:0003754] [evidence IGI,IPI] [pmid 11054575]; go_function: chaperone activity [goid GO:0003754] [evidence ISS] [pmid 9488429]; go_process: protein biosynthesis [goid GO:0006412] [evidence IPI] [pmid 11054575]; go_process: protein biosynthesis [goid GO:0006412] [evidence IGI,IMP] [pmid 11929994] --- --- --- --- --- --- S0001106 // SSZ1 SGDID:S0001106, Chr VIII from 227142-225526, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016609 // cdna:Genscan chromosome:SGD1:VIII:225526:227142:-1 // ensembl // 11 // --- /// GENEFINDER00000020238 // cdna:GeneFinder chromosome:SGD1:VIII:225526:227142:-1 // ensembl // 11 // --- /// YHR064C // cdna:known chromosome:SGD1:VIII:225526:227142:-1 gene:YHR064C // ensembl // 11 // --- AY389300 // gb // 1 // Cross Hyb Matching Probes /// YHR063W-A // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene 2.02426363340893 -1.29912939094948 -1.0461289157592 1.2211168731403 1.11733017075199 Max fold change below threshold 4 2.02426363340893 Max fold change at or above threshold -0.139522413836172 -1.32723193240986 1.00105677405769 0.465697572188348 819.116363525391 154.614835812345 0.18875808456188 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774823_s_at SPAC212.09c.S1 --- 2.02396827866011 --- --- --- --- 3.62320804595947 2.99897265434265 3.1476366519928 5.65880298614502 0.567627012729645 0.219482004642487 0.366210997104645 0.018554700538516 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC212.09c /DEF=pseudo-malic enzyme with 2 frameshifts --- --- --- --- --- --- SPAC212.09c // |||pseudo-malic enzyme with 2 frameshifts|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPAC750.08c // |||NAD-dependent malic enzyme|Schizosaccharomyces pombe|chr 1||Partial|Manual // sanger // 11 // --- /// SPBCPT2R1.07c // |||pseudo malic enzyme |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 2.02396827866011 -1.20814974445095 1.16153165040407 -1.15108840268002 1.56182115803579 Max fold change below threshold 4 2.02396827866011 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1780146_at YPR189W.S1 Protein involved in exosome mediated 3' to 5' mRNA degradation and translation inhibition of non-poly(A) mRNAs; forms complex with Ski2p and Ski8p; required for repressing propagation of dsRNA viruses 2.02365361829149 151.439434051514 286.989669799805 SKI3 6402 // mRNA catabolism // inferred from mutant phenotype /// 6402 // mRNA catabolism // traceable author statement /// 43330 // response to exogenous dsRNA // inferred from mutant phenotype 5634 // nucleus // traceable author statement /// 5737 // cytoplasm // inferred from direct assay 30371 // translation repressor activity // traceable author statement 254.362091064453 125.694480895996 177.184387207031 319.617248535156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR189W /GEN=SKI3 /DB_XREF=GI:6325447 /SEG=NC_001148:+912658,916956 /DEF=dsRNA virus protection family member, contains 8 copies of the tetratricopeptide (TPR) domain /NOTE=Ski3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10744028]; go_function: translation repressor activity [goid GO:0030371] [evidence TAS] [pmid 7739558]; go_process: mRNA catabolism [goid GO:0006402] [evidence IMP] [pmid 9482746]; go_process: mRNA catabolism [goid GO:0006402] [evidence TAS] [pmid 9841679] --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 4.19999980926514 --- S0006393 // SKI3 SGDID:S0006393, Chr XVI from 912660-916958, Verified ORF // sgd // 11 // --- /// GENSCAN00000017330 // cdna:Genscan chromosome:SGD1:XVI:912660:916958:1 // ensembl // 11 // --- /// GENEFINDER00000020965 // cdna:GeneFinder chromosome:SGD1:XVI:913122:916958:1 // ensembl // 11 // --- /// YPR189W // cdna:known chromosome:SGD1:XVI:912660:916958:1 gene:YPR189W // ensembl // 11 // --- --- No cerevisiae_gene -1.28381398680858 -2.02365361829149 1.52836176206251 -1.43557846757256 1.25654435060517 Max fold change below threshold 4 2.02365361829149 Max fold change at or above threshold 0.412043165000354 -1.09635857878847 -0.492729861620233 1.17704527540835 219.214551925659 85.3006241197175 0.389119350747504 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780248_at YPR192W.S1 Water channel that mediates the transport of water across cell membranes and may be involved in freeze tolerance 2.02361868744747 899.352081298828 638.111724853516 AQY1 6833 // water transport // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay 15250 // water channel activity // inferred from mutant phenotype /// 15250 // water channel activity // inferred from genetic interaction /// 15250 // water channel activity // inferred from sequence similarity 639.111328125 737.858825683594 1060.84533691406 637.112121582031 0.00122069998178631 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR192W /GEN=AQY1 /DB_XREF=GI:6325450 /SEG=NC_001148:+921854,922771 /DEF=Water channel that mediates the transport of water across cell membranes and may be involved in freeze tolerance /NOTE=Aqy1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 10092523]; go_function: water channel activity [goid GO:0015250] [evidence IGI,IMP,ISS] [pmid 9765289]; go_process: water transport [goid GO:0006833] [evidence IMP] [pmid 9765289] --- --- --- --- --- S0006396 // span:49-71,91-113,136-158,178-197,204-226,250-272 // numtm:6 S0006396 // AQY1 SGDID:S0006396, Chr XVI from 921856-922773, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020896 // cdna:GeneFinder chromosome:SGD1:XVI:921856:922773:1 // ensembl // 11 // --- /// YPR192W // cdna:known chromosome:SGD1:XVI:921856:922773:1 gene:YPR192W // ensembl // 11 // --- GENSCAN00000017333 // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene 2.02361868744747 1.154507506303 1.09708514783406 1.65987565895026 -1.00313791948897 Max fold change below threshold 4 2.02361868744747 Max fold change at or above threshold -0.647002113544108 -0.154103207242627 1.45808648942452 -0.656981168637786 768.731903076172 200.340265105386 0.260611357878737 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780093_at YML082W.S1 Hypothetical protein 2.02342890190951 225.827438354492 493.052688598633 --- 6790 // sulfur metabolism // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 16846 // carbon-sulfur lyase activity // inferred from sequence similarity 450.520477294922 222.651992797852 229.002883911133 535.584899902344 0.000244141003349796 0.030273400247097 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML082W /GEN=TUB1 /DB_XREF=GI:6323557 /SEG=NC_001145:+101862,103811 /DEF=Hypothetical ORF /NOTE=Yml082wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: carbon-sulfur lyase activity [goid GO:0016846] [evidence ISS] [pmid 10592175]; go_process: sulfur metabolism [goid GO:0006790] [evidence ISS] [pmid 10821189] --- --- --- --- --- --- S0004547 // YML082W SGDID:S0004547, Chr XIII from 101862-103811, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018648 // cdna:Genscan chromosome:SGD1:XIII:101862:103811:1 // ensembl // 11 // --- /// GENEFINDER00000022079 // cdna:GeneFinder chromosome:SGD1:XIII:101862:103811:1 // ensembl // 11 // --- /// YML082W // cdna:known chromosome:SGD1:XIII:101862:103811:1 gene:YML082W // ensembl // 11 // --- --- No cerevisiae_gene 1.04881906405047 -2.02342890190951 -1.44012470641763 -1.9673135534387 1.18881366529259 Max fold change below threshold 4 2.02342890190951 Max fold change at or above threshold 0.57586086825994 -0.864850013810174 -0.824696159458875 1.11368530500911 359.440063476563 158.163922639116 0.440028640962638 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1775758_at YDR162C.S1 Protein involved in the HOG (high osmolarity glycerol) pathway, negatively regulates Hog1p by recruitment of phosphatase Ptc1p the Pbs2p-Hog1p complex, found in the nucleus and cytoplasm, contains an SH3 domain that binds Pbs2p 2.02288394311978 282.166564941406 413.312683105469 NBP2 6469 // negative regulation of protein kinase activity // inferred from direct assay /// 6972 // hyperosmotic response // inferred from mutant phenotype /// 6972 // hyperosmotic response // inferred from physical interaction /// 9408 // response to heat // inferred from mutant phenotype 5634 // nucleus // traceable author statement /// 5737 // cytoplasm // traceable author statement /// 5737 // cytoplasm // inferred from direct assay --- 414.255493164063 204.784606933594 359.548522949219 412.369873046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR162C /GEN=NBP2 /DB_XREF=GI:6320366 /SEG=NC_001136:-780384,781094 /DEF=interacts with Nap1, which is involved in histone assembly /NOTE=Nbp2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002569 // NBP2 SGDID:S0002569, Chr IV from 781095-780385, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023477 // cdna:GeneFinder chromosome:SGD1:IV:780385:781086:-1 // ensembl // 11 // --- /// GENSCAN00000025217 // cdna:Genscan chromosome:SGD1:IV:780385:781086:-1 // ensembl // 11 // --- /// YDR162C // cdna:known chromosome:SGD1:IV:780385:781095:-1 gene:YDR162C // ensembl // 11 // --- --- No cerevisiae_gene -1.41513923057212 -2.02288394311978 1.24525110790047 -1.15215462371005 -1.00457264276669 Max fold change below threshold 4 2.02288394311978 Max fold change at or above threshold 0.674474374148381 -1.44957131176017 0.119742849567356 0.655354088044431 347.739624023438 98.618823323882 0.283599614512826 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774857_at YER173W.S1 Checkpoint protein, involved in the activation of the DNA damage and meiotic pachytene checkpoints; subunit of a clamp loader that loads Rad17p-Mec3p-Ddc1p onto DNA; homolog of human and S. pombe Rad17 protein 2.02285351160177 268.875778198242 587.239776611328 RAD24 77 // DNA damage checkpoint // inferred from mutant phenotype /// 6289 // nucleotide-excision repair // inferred from mutant phenotype /// 7131 // meiotic recombination // inferred from mutant phenotype 5634 // nucleus // inferred from physical interaction /// 5663 // DNA replication factor C complex // traceable author statement 3689 // DNA clamp loader activity // inferred from direct assay 527.690673828125 276.887054443359 260.864501953125 646.788879394531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER173W /GEN=RAD24 /DB_XREF=GI:6321021 /SEG=NC_001137:+536295,538274 /DEF=Checkpoint protein, involved in the activation of the DNA damage and meiotic pachytene checkpoints; subunit of a clamp loader that loads Rad17p-Mec3p-Ddc1p onto DNA; homolog of human and S. pombe Rad17 protein /NOTE=Rad24p; go_component: DNA replication factor C complex [goid GO:0005663] [evidence TAS] [pmid 12909721]; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 10660302]; go_function: DNA clamp loader activity [goid GO:0003689] [evidence IDA] [pmid 12604797]; go_process: DNA damage response, signal transduction resulting in cell cycle arrest [goid GO:0000077] [evidence IMP] [pmid 9564050]; go_process: meiotic recombination [goid GO:0007131] [evidence IMP] [pmid 10511543]; go_process: nucleotide-excision repair [goid GO:0006289] [evidence IMP] [pmid 11267834] --- --- --- --- --- --- S0000975 // RAD24 SGDID:S0000975, Chr V from 536295-538274, Verified ORF // sgd // 11 // --- /// GENSCAN00000016952 // cdna:Genscan chromosome:SGD1:V:536295:538274:1 // ensembl // 11 // --- /// GENEFINDER00000019573 // cdna:GeneFinder chromosome:SGD1:V:536781:538274:1 // ensembl // 11 // --- /// YER173W // cdna:known chromosome:SGD1:V:536295:538274:1 gene:YER173W // ensembl // 11 // --- --- No cerevisiae_gene -1.11753798649935 -1.90579756388022 -1.0000145739581 -2.02285351160177 1.2256970067377 Max fold change below threshold 4 2.02285351160177 Max fold change at or above threshold 0.523716297035432 -0.794622801219505 -0.878844701419885 1.14975120560396 428.057777404785 190.242115793084 0.44443092926959 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773545_at YMR107W.S1 Protein required for survival at high temperature during stationary phase; not required for growth on nonfermentable carbon sources 2.0228517680027 7942.39331054688 6236.01953125 SPG4 --- --- --- 7139.6083984375 10216.404296875 5668.38232421875 5332.4306640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR107W /GEN=YKU80 /DB_XREF=GI:6323754 /SEG=NC_001145:+483013,483360 /DEF=Protein required for survival at high temperature during stationary phase /NOTE=Ymr107wp --- --- --- --- --- --- S0004713 // SPG4 SGDID:S0004713, Chr XIII from 483013-483360, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018801 // cdna:Genscan chromosome:SGD1:XIII:483013:483360:1 // ensembl // 11 // --- /// GENEFINDER00000021987 // cdna:GeneFinder chromosome:SGD1:XIII:483013:483360:1 // ensembl // 11 // --- /// YMR107W // cdna:known chromosome:SGD1:XIII:483013:483360:1 gene:YMR107W // ensembl // 11 // --- --- No cerevisiae_gene -2.0228517680027 1.43094743110993 -1.1481145124624 -1.25954954871918 -1.33890318472481 Max fold change below threshold 4 2.0228517680027 Max fold change at or above threshold 0.022625903771271 1.40382742246039 -0.637820793092151 -0.788632533139512 7089.20642089844 2227.62273050325 0.314227375850757 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774677_at YOR066W.S1 Protein of unknown function; potential Cdc28p substrate 2.02265266152248 365.940582275391 603.516540527344 --- --- --- --- 573.380981445313 283.479705810547 448.401458740234 633.652099609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR066W /GEN=CYT1 /DB_XREF=GI:6324640 /SEG=NC_001147:+449437,451326 /DEF=Protein of unknown function; potential Cdc28p substrate /NOTE=Yor066wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005592 // YOR066W SGDID:S0005592, Chr XV from 449437-451326, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022773 // cdna:GeneFinder chromosome:SGD1:XV:449437:451326:1 // ensembl // 11 // --- /// GENSCAN00000017510 // cdna:Genscan chromosome:SGD1:XV:449512:451326:1 // ensembl // 11 // --- /// YOR066W // cdna:known chromosome:SGD1:XV:449437:451326:1 gene:YOR066W // ensembl // 11 // --- --- No cerevisiae_gene -1.43267737462895 -2.02265266152248 -1.23484336092897 -1.27872238207298 1.10511530747347 Max fold change below threshold 4 2.02265266152248 Max fold change at or above threshold 0.572813122804202 -1.30033658838197 -0.234721636560371 0.962245102138144 484.728561401367 154.766740695374 0.319285375402551 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775507_at YLR082C.S1 Protein of unknown function; overexpression suppresses the lethality caused by a rad53 null mutation 2.02254450570485 120.07300567627 148.547031402588 SRL2 6139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolism // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 115.28980255127 92.1613464355469 147.984664916992 181.804260253906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR082C /GEN=SRL2 /DB_XREF=GI:6323111 /SEG=NC_001144:-292395,293573 /DEF=Suppressor of Rad53 null Lethality /NOTE=Srl2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ISS] [pmid 9744871]; go_process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism [goid GO:0006139] [evidence IGI] [pmid 9744871] --- --- --- --- --- --- S0004072 // SRL2 SGDID:S0004072, Chr XII from 293573-292395, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017881 // cdna:Genscan chromosome:SGD1:XII:292395:293387:-1 // ensembl // 11 // --- /// GENEFINDER00000024660 // cdna:GeneFinder chromosome:SGD1:XII:292395:293501:-1 // ensembl // 11 // --- /// YLR082C // cdna:known chromosome:SGD1:XII:292395:293573:-1 gene:YLR082C // ensembl // 11 // --- --- No cerevisiae_gene 1.4306091515171 -1.25095614387424 2.02254450570485 1.28358850169063 1.57693270550149 Max fold change below threshold 4 2.02254450570485 Max fold change at or above threshold -0.486739915861184 -1.0786124156674 0.349943251506203 1.21540908002238 134.310018539429 39.0767540699984 0.290944446996162 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770210_at YOR045W.S1 involved in supporting the cooperativity between receptors and the general insertion pore and facilitating the release of preproteins from import components; outer mitochondrial membrane protein, component of the mitochondiral protein translocation complex, associates with TOM40 2.02228937201725 4780.12768554688 2750.8525390625 TOM6 30150 // mitochondrial matrix protein import // inferred from mutant phenotype /// 30150 // mitochondrial matrix protein import // inferred from physical interaction 5742 // mitochondrial outer membrane translocase complex // inferred from mutant phenotype /// 5742 // mitochondrial outer membrane translocase complex // inferred from physical interaction 8565 // protein transporter activity // inferred from mutant phenotype /// 8565 // protein transporter activity // inferred from physical interaction 2844.61962890625 5752.64404296875 3807.611328125 2657.08544921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR045W /GEN=TOM6 /DB_XREF=GI:6324619 /SEG=NC_001147:+413851,414036 /DEF=involved in supporting the cooperativity between receptors and the general insertion pore and facilitating the release of preproteins from import components /NOTE=Tom6p; go_component: mitochondrial outer membrane translocase complex [goid GO:0005742] [evidence IMP] [pmid 7565772]; go_component: mitochondrial outer membrane translocase complex [goid GO:0005742] [evidence IPI] [pmid 9774667]; go_function: protein transporter activity [goid GO:0008565] [evidence IMP] [pmid 7565772]; go_function: protein transporter activity [goid GO:0008565] [evidence IPI] [pmid 9710610]; go_process: mitochondrial matrix protein import [goid GO:0030150] [evidence IMP,IPI] [pmid 9774667] --- --- --- --- --- S0005571 // span:32-54 // numtm:1 S0005571 // TOM6 SGDID:S0005571, Chr XV from 413851-414036, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022881 // cdna:GeneFinder chromosome:SGD1:XV:413851:414036:1 // ensembl // 11 // --- /// YOR045W // cdna:known chromosome:SGD1:XV:413851:414036:1 gene:YOR045W // ensembl // 11 // --- --- No cerevisiae_gene 1.13934981421375 2.02228937201725 1.14332104141917 1.33853091971703 -1.07057890431888 Max fold change below threshold 4 2.02228937201725 Max fold change at or above threshold -0.649687218348818 1.40196535008872 0.0297171166120748 -0.781995248351972 3765.49011230469 1417.40587992301 0.376420024392383 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771187_at YGR141W.S1 Vacuolar protein sorting (VPS) protein required for cytoplasm to vacuole targeting of proteins 2.02190812503572 661.915252685547 461.679901123047 VPS62 6623 // protein-vacuolar targeting // inferred from mutant phenotype --- --- 436.752136230469 440.7578125 883.072692871094 486.607666015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR141W /GEN=VPS62 /DB_XREF=GI:6321580 /SEG=NC_001139:+770572,771975 /DEF=Vps62p /NOTE=go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 12134085] --- --- --- --- --- S0003373 // span:13-34 // numtm:1 S0003373 // VPS62 SGDID:S0003373, Chr VII from 770574-771977, Verified ORF // sgd // 11 // --- /// GENSCAN00000019449 // cdna:Genscan chromosome:SGD1:VII:770574:771977:1 // ensembl // 11 // --- /// GENEFINDER00000021530 // cdna:GeneFinder chromosome:SGD1:VII:770718:771977:1 // ensembl // 11 // --- /// YGR141W // cdna:known chromosome:SGD1:VII:770574:771977:1 gene:YGR141W // ensembl // 11 // --- --- No cerevisiae_gene -1.16000045390108 1.00917150927779 1.91336152605731 2.02190812503572 1.11415062606322 Max fold change below threshold 4 2.02190812503572 Max fold change at or above threshold -0.58059604410092 -0.561997366824032 1.49170621810146 -0.349112807176507 561.797576904297 215.37425537831 0.383366294609347 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779982_at YBL092W.S1 Protein component of the large (60S) ribosomal subunit, has similarity to rat L32 ribosomal protein; overexpression disrupts telomeric silencing 2.02173197771137 2807.22473144531 5118.9365234375 RPL32 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 5568.552734375 2860.10180664063 2754.34765625 4669.3203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL092W /GEN=RPL32 /DB_XREF=GI:6319378 /SEG=NC_001134:+45975,46367 /DEF=Protein component of the large (60S) ribosomal subunit, has similairty to rat L32 ribosomal protein; overexpression disrupts telomeric silencing /NOTE=Rpl32p; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- scop // a.4.1.DNA-binding domain of human telomeric protein, hTRF1 // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; DNA-binding domain of human telomeric protein, hTRF1 // 9.69999980926514 --- S0000188 // RPL32 SGDID:S0000188, Chr II from 45975-46367, Verified ORF // sgd // 11 // --- /// GENSCAN00000021066 // cdna:Genscan chromosome:SGD1:II:45975:46367:1 // ensembl // 11 // --- /// GENEFINDER00000022389 // cdna:GeneFinder chromosome:SGD1:II:45975:46367:1 // ensembl // 11 // --- /// YBL092W // cdna:known chromosome:SGD1:II:45975:46367:1 gene:YBL092W // ensembl // 11 // --- --- No cerevisiae_gene -1.11455974561868 -1.9469771046072 -1.47947516779246 -2.02173197771137 -1.19258315165651 Max fold change below threshold 4 2.02173197771137 Max fold change at or above threshold 1.1592624053884 -0.796427340825092 -0.872789184940714 0.509954120377402 3963.08062744141 1384.90828260379 0.34945246206053 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778586_at SPAC10F6.17c.S1 --- 2.02166032081601 --- --- --- --- 8.58091640472412 17.3476982116699 13.9906511306763 4.73560333251953 0.334473013877869 0.0461426004767418 0.0805663987994194 0.274170011281967 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC10F6.17c /DEF=serinethreonine protein phosphatase (predicted) --- --- --- --- --- --- SPAC10F6.17c // ||SPAC56E4.01c|protein phosphatase type 2C|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.38018133075798 2.02166032081601 -1.1859800448347 1.63043787758775 -1.81200066859458 Max fold change below threshold 4 2.02166032081601 Max fold change at or above threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1777766_at SPAC630.12.S1 --- 2.02119843306441 --- --- --- --- 3.67079281806946 7.41940069198608 5.69389200210571 5.27717876434326 0.334473013877869 0.0375977009534836 0.030273400247097 0.194580003619194 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC630.12 /DEF=serinethreonine protein phosphatase (predicted) --- --- --- --- --- --- SPAC630.12 // |||serine/threonine protein phosphatase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.76157303051144 2.02119843306441 1.56752221831294 1.55113412396297 1.43761280624893 Max fold change below threshold 4 2.02119843306441 Max fold change at or above threshold APPPPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1769366_at YDR020C.S1 Hypothetical protein 2.02094779511792 48.2163982391357 104.152488708496 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 94.2319641113281 46.6276092529297 49.8051872253418 114.073013305664 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR020C /GEN=GCV1 /DB_XREF=GI:6320223 /SEG=NC_001136:-485742,486440 /DEF=Hypothetical ORF /NOTE=Ydr020cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002427 // YDR020C SGDID:S0002427, Chr IV from 486440-485742, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025112 // cdna:Genscan chromosome:SGD1:IV:485742:486440:-1 // ensembl // 11 // --- /// YDR020C // cdna:known chromosome:SGD1:IV:485742:486440:-1 gene:YDR020C // ensembl // 11 // --- --- No cerevisiae_gene 1.07219905932814 -2.02094779511792 -1.00225368017379 -1.89201104063677 1.21055540316336 Max fold change below threshold 4 2.02094779511792 Max fold change at or above threshold 0.541637305178041 -0.887051709680257 -0.791687099519177 1.13710150402139 76.1844434738159 33.320305793154 0.437363643728735 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774546_at YLR135W.S1 Subunit of a complex, with Slx1p, that hydrolyzes 5' branches from duplex DNA in response to stalled or converging replication forks; function overlaps with that of Sgs1p-Top3p 2.02070748706924 191.904571533203 280.880889892578 SLX4 6260 // DNA replication // inferred from mutant phenotype /// 6261 // DNA-dependent DNA replication // inferred from genetic interaction 5634 // nucleus // inferred from mutant phenotype /// 5634 // nucleus // inferred from curator 17108 // 5'-flap endonuclease activity // inferred from direct assay 263.267974853516 130.285049438477 253.52409362793 298.493804931641 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR135W /GEN=SLX4 /DB_XREF=GI:6323164 /SEG=NC_001144:+413282,415528 /DEF=Subunit of a complex, with Slx1p, that hydrolyzes 5' branches from duplex DNA in response to stalled or converging replication forks; function overlaps with that of Sgs1p-Top3p /NOTE=Slx4p; go_component: nucleus [goid GO:0005634] [evidence IMP] [pmid 12228808]; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 12832395]; go_function: 5'-flap endonuclease activity [goid GO:0017108] [evidence IDA] [pmid 12832395]; go_process: DNA replication [goid GO:0006260] [evidence IMP] [pmid 12228808]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence IGI] [pmid 12832395] --- --- --- --- --- --- S0004125 // SLX4 SGDID:S0004125, Chr XII from 413282-415528, Verified ORF // sgd // 11 // --- /// GENSCAN00000017924 // cdna:Genscan chromosome:SGD1:XII:413282:415528:1 // ensembl // 11 // --- /// GENEFINDER00000024673 // cdna:GeneFinder chromosome:SGD1:XII:413282:415528:1 // ensembl // 11 // --- /// YLR135W // cdna:known chromosome:SGD1:XII:413282:415528:1 gene:YLR135W // ensembl // 11 // --- --- No cerevisiae_gene -1.32357656792939 -2.02070748706924 -1.05784005665184 -1.03843374839113 1.13380218424867 Max fold change below threshold 4 2.02070748706924 Max fold change at or above threshold 0.366505450305527 -1.44702103180411 0.233625333659119 0.846890247839461 236.392730712891 73.3283614697167 0.310197192817986 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776397_at YIL085C.S1 Putative mannosyltransferase involved in protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family 2.01953557422442 690.900482177734 1184.53869628906 KTR7 6487 // N-linked glycosylation // inferred from sequence similarity /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5794 // Golgi apparatus // inferred from sequence similarity 30 // mannosyltransferase activity // inferred from sequence similarity 1139.64929199219 564.312561035156 817.488403320313 1229.42810058594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL085C /GEN=KTR7 /DB_XREF=GI:6322106 /SEG=NC_001141:-200487,202040 /DEF=Putative mannosyltransferase of the KRE2 family /NOTE=Ktr7p; go_component: Golgi apparatus [goid GO:0005794] [evidence ISS] [pmid 9878809]; go_function: mannosyltransferase activity [goid GO:0000030] [evidence ISS] [pmid 9878809]; go_process: N-linked glycosylation [goid GO:0006487] [evidence ISS] [pmid 9878809]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9090056] --- --- --- --- --- S0001347 // span:21-43 // numtm:1 S0001347 // KTR7 SGDID:S0001347, Chr IX from 202040-200487, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016411 // cdna:Genscan chromosome:SGD1:IX:200487:202040:-1 // ensembl // 11 // --- /// GENEFINDER00000019016 // cdna:GeneFinder chromosome:SGD1:IX:200487:201344:-1 // ensembl // 11 // --- /// YIL085C // cdna:known chromosome:SGD1:IX:200487:202040:-1 gene:YIL085C // ensembl // 11 // --- --- No cerevisiae_gene -1.02564551296354 -2.01953557422442 1.02487980139689 -1.3940861880895 1.07877757589513 Max fold change below threshold 4 2.01953557422442 Max fold change at or above threshold 0.661256152302865 -1.22279036385334 -0.39371925129146 0.955253462841938 937.719589233398 305.372890755809 0.325654805831087 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775116_at YDR507C.S1 Protein kinase involved in bud growth and assembly of the septin ring, proposed to have kinase-dependent and kinase-independent activities; undergoes autophosphorylation; similar to Kcc4p and Hsl1p 2.01945675640197 141.40161895752 195.833671569824 GIN4 135 // septin checkpoint // inferred from mutant phenotype /// 135 // septin checkpoint // inferred from genetic interaction /// 921 // septin ring assembly // inferred from genetic interaction /// 921 // septin ring assembly // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from sequence similarity /// 7117 // budding cell bud growth // inferred from mutant phenotype /// 7117 // budding cell bud growth // inferred from genetic interaction /// 7120 // axial bud site selection // traceable author statement 5935 // bud neck // inferred from direct assay 4672 // protein kinase activity // inferred from sequence similarity 191.197143554688 140.128814697266 142.674423217773 200.470199584961 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR507C /GEN=GIN4 /DB_XREF=GI:6320715 /SEG=NC_001136:-1462346,1465774 /DEF=Growth inhibitory gene /NOTE=Gin4p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 9813093]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 9813093]; go_process: axial budding [goid GO:0007120] [evidence TAS] [pmid 10652251]; go_process: bud growth [goid GO:0007117] [evidence IGI] [pmid 15107529]; go_process: bud growth [goid GO:0007117] [evidence IMP] [pmid 9925642]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence ISS] [pmid 9813093]; go_process: septin checkpoint [goid GO:0000135] [evidence IGI,IMP] [pmid 9925642]; go_process: septin ring assembly [goid GO:0000921] [evidence IGI,IMP] [pmid 9813093] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 7.0E-71 /// hanks // 2.2.12 // CaMK Group; CaMK II KIN1/SNF1/Nim1; YCL24 // 1.0E-123 --- --- S0002915 // GIN4 SGDID:S0002915, Chr IV from 1465776-1462348, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023831 // cdna:GeneFinder chromosome:SGD1:IV:1462348:1465776:-1 // ensembl // 11 // --- /// YDR507C // cdna:known chromosome:SGD1:IV:1462348:1465776:-1 gene:YDR507C // ensembl // 11 // --- --- No cerevisiae_gene 1.66222410069164 -1.36443845591465 -2.01945675640197 -1.34009403537487 1.04849997158886 Max fold change below threshold 4 2.01945675640197 Max fold change at or above threshold 0.712947938198547 -0.899535177984394 -0.819157557420573 1.00574479720642 168.617645263672 31.6706130717886 0.18782502283355 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775166_at YDR351W.S1 Protein involved in the transport of cell wall components from the Golgi to the cell surface; required for bud growth 2.01936485365591 341.890991210938 594.576354980469 SBE2 7047 // cell wall organization and biogenesis // inferred from genetic interaction /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5794 // Golgi apparatus // inferred from direct assay --- 555.514465332031 343.881408691406 339.900573730469 633.638244628906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR351W /GEN=SBE2 /DB_XREF=GI:6320558 /SEG=NC_001136:+1178655,1181249 /DEF=Required for bud growth /NOTE=Sbe2p; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 10679005]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IGI,IMP] [pmid 10679005] --- --- --- --- --- --- S0002759 // SBE2 SGDID:S0002759, Chr IV from 1178657-1181251, Verified ORF // sgd // 10 // --- /// GENSCAN00000025377 // cdna:Genscan chromosome:SGD1:IV:1178657:1181251:1 // ensembl // 10 // --- /// GENEFINDER00000023667 // cdna:GeneFinder chromosome:SGD1:IV:1179602:1181251:1 // ensembl // 10 // --- /// YDR351W // cdna:known chromosome:SGD1:IV:1178657:1181251:1 gene:YDR351W // ensembl // 10 // --- --- No cerevisiae_gene -2.01936485365591 -1.61542453674936 1.07092528975013 -1.6343440060579 1.14063320430401 Max fold change below threshold 4 2.01936485365591 Max fold change at or above threshold 0.584434012512827 -0.832665366442562 -0.859321120701443 1.10755247463118 468.233673095703 149.342424238891 0.318948492643687 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775320_at YLL003W.S1 Centrin (Cdc31p)-binding protein required for spindle pole body (SPB) duplication, localizes to the half-bridge of the SPB, required for progression through G(2)-M transition, has similarity to Xenopus laevis XCAP-C 2.01933923167824 221.048133850098 412.943344116211 SFI1 86 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 7103 // spindle pole body duplication in nuclear envelope // inferred from mutant phenotype 5825 // half bridge of spindle pole body // inferred from direct assay --- 392.945678710938 237.511123657227 204.585144042969 432.941009521484 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL003W /GEN=SFI1 /DB_XREF=GI:6323026 /SEG=NC_001144:+143200,146040 /DEF=Sfi1p /NOTE=go_component: half bridge of spindle pole body [goid GO:0005825] [evidence IDA] [pmid 14504268]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence IMP] [pmid 10455233]; go_process: spindle pole body duplication (sensu Saccharomyces) [goid GO:0007103] [evidence IMP] [pmid 14504268] --- --- --- --- --- --- S0003926 // SFI1 SGDID:S0003926, Chr XII from 143200-146040, Verified ORF // sgd // 11 // --- /// GENSCAN00000017736 // cdna:Genscan chromosome:SGD1:XII:143200:146040:1 // ensembl // 11 // --- /// GENEFINDER00000024616 // cdna:GeneFinder chromosome:SGD1:XII:143947:146040:1 // ensembl // 11 // --- /// YLL003W // cdna:known chromosome:SGD1:XII:143200:146040:1 gene:YLL003W // ensembl // 11 // --- --- No cerevisiae_gene -2.01933923167824 -1.65443063322808 -1.00791542807492 -1.9206950756327 1.10178335830477 Max fold change below threshold 4 2.01933923167824 Max fold change at or above threshold 0.673366889347432 -0.704705077644956 -0.996624525521217 1.02796271381874 316.995738983154 112.791319159437 0.355813360524163 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1780152_at SPBC215.10.S1 --- 2.01918545798375 --- --- --- --- 7.48794174194336 15.1195430755615 8.6108570098877 8.35517883300781 0.00805663969367743 0.0676269978284836 0.0375977009534836 0.014160200022161 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC215.10 /DEF=conserved protein --- --- --- --- --- --- SPBC215.10 // |||conserved protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.19118440445072 2.01918545798375 -1.76903238699789 1.14996314162734 1.11581782029722 Max fold change below threshold 4 2.01918545798375 Max fold change at or above threshold PPAAPP No 4 0 PAPP 1 3 0 No No 2 < x = 3
1777263_at YGL123W.S1 Protein component of the small (40S) subunit, essential for control of translational accuracy; has similarity to E. coli S5 and rat S2 ribosomal proteins 2.01917281738343 4115.27001953125 6787.98193359375 RPS2 6412 // protein biosynthesis // traceable author statement /// 6450 // regulation of translational fidelity // inferred from mutant phenotype 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 7958.07275390625 4289.2861328125 3941.25390625 5617.89111328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL123W /GEN=RPS2 /DB_XREF=GI:6321315 /SEG=NC_001139:+277621,278385 /DEF=Protein component of the small (40S) subunit, essential for control of translational accuracy; has similarity to E. coli S5 and rat S2 ribosomal proteins /NOTE=Rps2p; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: regulation of translational fidelity [goid GO:0006450] [evidence IMP] [pmid 8950190] --- --- --- --- --- --- S0003091 // RPS2 SGDID:S0003091, Chr VII from 277623-278387, Verified ORF // sgd // 11 // --- /// GENSCAN00000019258 // cdna:Genscan chromosome:SGD1:VII:277623:278387:1 // ensembl // 11 // --- /// GENEFINDER00000021692 // cdna:GeneFinder chromosome:SGD1:VII:277623:278387:1 // ensembl // 11 // --- /// YGL123W // cdna:known chromosome:SGD1:VII:277623:278387:1 gene:YGL123W // ensembl // 11 // --- YGL123C-A // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene -1.32059547366313 -1.85533734693706 -1.51681159460754 -2.01917281738343 -1.41655873946944 Max fold change below threshold 4 2.01917281738343 Max fold change at or above threshold 1.37682379719898 -0.638488385938728 -0.829667012213496 0.0913316009532489 5451.6259765625 1820.45573474463 0.333928949376037 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
AFFX-BioDn-3_at AFFX-BioDn-3 --- 2.01898998238774 --- --- --- --- 3362.38037109375 3878.3896484375 1665.37744140625 1821.00390625 4.42872878920753E-5 4.42872878920753E-5 4.42872878920753E-5 4.42872878920753E-5 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --- --- --- --- --- --- J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// AFFX-BioDn-3 // E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioD gene dethiobiotin synthetase /LEN=676 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// AFFX-BioDn-3 // --- // unknown // --- // --- /// AFFX-BioDn-3 // --- // unknown // --- // --- /// AFFX-BioDn-3 // --- // unknown // --- // --- /// AFFX-BioDn-3 // --- // unknown // --- // --- /// AFFX-BioDn-3 // --- // gb // --- // --- /// AFFX-BioDn-3 // E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // --- // --- /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-BioDn-3 // --- // unknown // --- // --- /// AFFX-BioDn-3 // --- // affx // --- // --- /// AFFX-BioDn-3 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-BioDn-3 // --- // affx // --- // --- /// AFFX-BioDn-3 // --- // affx // --- // --- /// AFFX-BioDn-3 // --- // affx // --- // --- /// AFFX-BioDn-3 // --- // affx // --- // --- /// AFFX-BioDn-3 // --- // affx // --- // --- /// AFFX-BioDn-3 // --- // affx // --- // --- /// AFFX-BioDn-3 // --- // affx // --- // --- /// AFFX-BioDn-3 // --- // affx // --- // --- /// AFFX-BioDn-3 // --- // affx // --- // --- /// AFFX-BioDn-3 // --- // affx // --- // --- /// AFFX-BioDn-3 // --- // affx // --- // --- 1036660 // gb // 8 // Cross Hyb Matching Probes /// 26245917 // gb // 8 // Cross Hyb Matching Probes AFFX_control No -1.47387268453788 1.15346546802969 -1.78681709739964 -2.01898998238774 -1.84644325009599 Max fold change below threshold 4 2.01898998238774 Max fold change at or above threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774204_at YCL017C.S1 Cysteine desulfurase involved in iron-sulfur cluster (Fe/S)biogenesis; required for the post-transcriptional thio-modification of mitochondrial and cytoplasmic tRNAs; essential protein located predominantly in mitochondria 2.01857743609529 2878.58422851563 1703.56085205078 NFS1 6879 // iron ion homeostasis // inferred from mutant phenotype /// 16226 // iron-sulfur cluster assembly // traceable author statement /// 16226 // iron-sulfur cluster assembly // inferred from sequence similarity 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 4123 // cystathionine gamma-lyase activity // inferred from sequence similarity 1615.49304199219 2496.17065429688 3260.99780273438 1791.62866210938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL017C /GEN=NFS1 /DB_XREF=GI:10383773 /SEG=NC_001135:-92776,94269 /DEF=Required for the post-transcriptional thio-modification of both mitochondrial and cytoplasmic tRNAs, also functions in mitochondrial iron-sulfur cluster biogenesis /NOTE=Nfs1p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 10406803]; go_function: cystathionine gamma-lyase activity [goid GO:0004123] [evidence ISS] [pmid 12065597]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IMP] [pmid 10551871]; go_process: iron-sulfur cluster assembly [goid GO:0016226] [evidence ISS,TAS] [pmid 9813017] --- --- --- --- --- --- S0000522 // NFS1 SGDID:S0000522, Chr III from 94269-92776, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022452 // cdna:Genscan chromosome:SGD1:III:92776:94269:-1 // ensembl // 11 // --- /// GENEFINDER00000023379 // cdna:GeneFinder chromosome:SGD1:III:92776:95762:-1 // ensembl // 11 // --- /// YCL017C // cdna:known chromosome:SGD1:III:92776:94269:-1 gene:YCL017C // ensembl // 11 // --- --- No cerevisiae_gene 1.22584502980516 1.54514478825527 1.06005197625924 2.01857743609529 1.10902901810086 Max fold change below threshold 4 2.01857743609529 Max fold change at or above threshold -0.900459999700057 0.273369230638906 1.29278479253028 -0.665694023469127 2291.0725402832 750.260420802758 0.327471264052607 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775448_at YDR500C.S1 Protein component of the large (60S) ribosomal subunit, has similarity to Rpl37Ap and to rat L37 ribosomal protein 2.0184773273865 2381.1376953125 4055.76513671875 RPL37B 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 4461.96240234375 2551.716796875 2210.55859375 3649.56787109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR500C /GEN=RPL37B /DB_XREF=GI:6320708 /SEG=NC_001136:-1450186,1450841 /DEF=Protein component of the large (60S) ribosomal subunit, has similarity to Rpl37Ap and to rat L37 ribosomal protein /NOTE=Rpl37bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0002908 // RPL37B SGDID:S0002908, Chr IV from 1450843-1450837,1450447-1450188, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YDR500C // cdna:known chromosome:SGD1:IV:1450188:1450843:-1 gene:YDR500C // ensembl // 11 // --- --- No cerevisiae_gene -1.04036132411583 -1.7486119179872 -1.6086868500869 -2.0184773273865 -1.22260019814525 Max fold change below threshold 4 2.0184773273865 Max fold change at or above threshold 1.20542571049257 -0.646314395951392 -0.977023874125482 0.417912559584303 3218.45141601563 1031.59487598783 0.320525228640836 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776864_at YMR127C.S1 Histone acetyltransferase (HAT) catalytic subunit of the SAS complex (Sas2p-Sas4p-Sas5p), which acetylates free histones and nucleosomes and regulates transcriptional silencing; member of the MYSTacetyltransferase family 2.0184312813303 131.110771179199 261.917747497559 SAS2 6348 // chromatin silencing at telomere // inferred from direct assay 784 // nuclear chromosome, telomeric region // inferred from curator /// 790 // nuclear chromatin // inferred from direct assay 4406 // H3/H4 histone acetyltransferase activity // inferred from direct assay /// 16407 // acetyltransferase activity // inferred from direct assay 245.746780395508 121.751373291016 140.470169067383 278.088714599609 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR127C /GEN=SAS2 /DB_XREF=GI:6323775 /SEG=NC_001145:-522328,523344 /DEF=Protein involved in silencing HMR, homologous to acetyltransferases /NOTE=Sas2p; go_component: nuclear chromatin [goid GO:0000790] [evidence IDA] [pmid 11731479]; go_component: nuclear chromosome, telomeric region [goid GO:0000784] [evidence IC] [pmid 11731479]; go_function: H3/H4 histone acetyltransferase activity [goid GO:0004406] [evidence IDA] [pmid 12626510]; go_function: acetyltransferase activity [goid GO:0016407] [evidence IDA] [pmid 11731479]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IDA] [pmid 11731479] --- --- --- --- --- --- S0004734 // SAS2 SGDID:S0004734, Chr XIII from 523344-522328, reverse complement, Verified ORF // sgd // 11 // --- /// YMR127C // cdna:known chromosome:SGD1:XIII:522328:523344:-1 gene:YMR127C // ensembl // 11 // --- --- No cerevisiae_gene -1.13137824786526 -2.0184312813303 1.08761143330741 -1.74945884971224 1.13160674639175 Max fold change below threshold 4 2.0184312813303 Max fold change at or above threshold 0.638994406074648 -0.970355873322556 -0.727402525967609 1.05876399321552 196.514259338379 77.0468733201673 0.392067596415484 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777451_at YKL098W.S1 Hypothetical protein 2.01781291088251 625.238433837891 1250.54077148438 --- --- --- --- 1200.45483398438 594.9287109375 655.548156738281 1300.62670898438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL098W /GEN=UTP11 /DB_XREF=GI:6322751 /SEG=NC_001143:+256415,257488 /DEF=Hypothetical ORF /NOTE=Ykl098wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001581 // YKL098W SGDID:S0001581, Chr XI from 256415-257488, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018343 // cdna:Genscan chromosome:SGD1:XI:256415:257488:1 // ensembl // 11 // --- /// GENEFINDER00000023102 // cdna:GeneFinder chromosome:SGD1:XI:256415:257488:1 // ensembl // 11 // --- /// YKL098W // cdna:known chromosome:SGD1:XI:256415:257488:1 gene:YKL098W // ensembl // 11 // --- --- No cerevisiae_gene -1.81084065368043 -2.01781291088251 1.05416749795559 -1.83122295691793 1.08344493450664 Max fold change below threshold 4 2.01781291088251 Max fold change at or above threshold 0.720997948085179 -0.941762540150586 -0.775302968119065 0.996067560184471 937.889602661133 364.169179705103 0.388285762707917 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779725_at YOL013W-B.S1 Identified by SAGE 2.01685007670546 22.4540643692017 30.0422601699829 --- --- --- --- 27.7092914581299 24.4326610565186 20.4754676818848 32.3752288818359 0.0107421996071935 0.0561522990465164 0.0375977009534836 0.000244141003349796 P M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL013W-B /GEN=CMK2 /DB_XREF=GI:33438878 /SEG=NC_001147:+301047,301238 /DEF=Identified by SAGE /NOTE=Yol013w-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028811 // YOL013W-B SGDID:S0028811, Chr XV from 301047-301238, Uncharacterized ORF // sgd // 10 // --- /// YOL013W-B // cdna:known chromosome:SGD1:XV:301047:301238:1 gene:YOL013W-B // ensembl // 10 // --- M26096 // gb // 3 // Cross Hyb Matching Probes No cerevisiae_gene 2.01685007670546 -1.13410861772411 1.01076567860361 -1.35329223677001 1.16838891137857 Max fold change below threshold 4 2.01685007670546 Max fold change at or above threshold 0.289733470622776 -0.360003394299571 -1.14469196212268 1.21496188579947 26.2481622695923 5.04301137661772 0.192128169767523 PPMPPP Called_P_>2EXP 3 0 PMPP 0 3 1 Yes Yes 2 < x = 3
1778507_at YNL297C.S1 Peripheral membrane protein with a role in endocytosis and vacuole integrity, interacts with Arl1p and localizes to the endosome; member of the Sec7p family of proteins 2.01665137714982 529.470138549805 715.476776123047 MON2 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6810 // transport // inferred from mutant phenotype /// 6810 // transport // inferred from sequence similarity /// 6897 // endocytosis // inferred from mutant phenotype 5768 // endosome // inferred from direct assay /// 5829 // cytosol // traceable author statement /// 19898 // extrinsic to membrane // inferred from direct assay 5085 // guanyl-nucleotide exchange factor activity // inferred from genetic interaction /// 5085 // guanyl-nucleotide exchange factor activity // inferred from physical interaction /// 5085 // guanyl-nucleotide exchange factor activity // inferred from sequence similarity 672.677490234375 505.757171630859 553.18310546875 758.276062011719 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL297C /GEN=MON2 /DB_XREF=GI:6324033 /SEG=NC_001146:-71671,76581 /DEF=Peripheral membrane protein with a role in endocytosis and vacuole integrity, interacts with Arl1p and localizes to the endosome; member of the Sec7p family of proteins /NOTE=Mon2p; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 12052896]; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 12052896]; go_component: extrinsic to membrane [goid GO:0019898] [evidence IDA] [pmid 12052896]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 12134085]; go_process: transport [goid GO:0006810] [evidence IMP,ISS] [pmid 11169758] --- --- --- --- scop // a.2.7.Phenylalanyl-tRNA synthetase (PheRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Phenylalanyl-tRNA synthetase (PheRS) // 0.730000019073486 --- S0005241 // MON2 SGDID:S0005241, Chr XIV from 76581-71671, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000019802 // cdna:Genscan chromosome:SGD1:XIV:71671:76575:-1 // ensembl // 10 // --- /// YNL297C // cdna:known chromosome:SGD1:XIV:71671:76581:-1 gene:YNL297C // ensembl // 10 // --- --- No cerevisiae_gene -2.01665137714982 -1.33004043831008 1.22297404952733 -1.21601235392822 1.12725053687692 Max fold change below threshold 4 2.01665137714982 Max fold change at or above threshold 0.43815198646197 -1.01863275682073 -0.604726424571983 1.18520719493075 622.473457336426 114.581319836848 0.184074225955181 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776016_at YBR225W.S1 Hypothetical protein 2.01638219272431 463.920394897461 686.008392333984 --- --- --- --- 638.805114746094 376.987945556641 550.852844238281 733.211669921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR225W /GEN=TDP1 /DB_XREF=GI:6319702 /SEG=NC_001134:+670584,673286 /DEF=Hypothetical ORF /NOTE=Ybr225wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000429 // YBR225W SGDID:S0000429, Chr II from 670622-673324, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021319 // cdna:Genscan chromosome:SGD1:II:670622:673324:1 // ensembl // 11 // --- /// GENEFINDER00000022181 // cdna:GeneFinder chromosome:SGD1:II:671315:673324:1 // ensembl // 11 // --- /// YBR225W // cdna:known chromosome:SGD1:II:670622:673324:1 gene:YBR225W // ensembl // 11 // --- YBR226C // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene -2.01638219272431 -1.69449745615305 1.41155548302566 -1.15966563743432 1.1477861604369 Max fold change below threshold 4 2.01638219272431 Max fold change at or above threshold 0.421277333289349 -1.30642305750443 -0.159109249446912 1.044254973662 574.964393615723 151.540840405299 0.263565608736775 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778145_at YHR031C.S1 DNA helicase involved in rDNA replication and Ty1 transposition; structurally and functionally related to Pif1p 2.01615483999169 218.980995178223 482.315856933594 RRM3 2 // mitochondrial genome maintenance // inferred from genetic interaction /// 6260 // DNA replication // inferred from mutant phenotype /// 6260 // DNA replication // inferred from physical interaction /// 6260 // DNA replication // inferred from genetic interaction 5724 // nuclear telomeric heterochromatin // inferred from physical interaction 3678 // DNA helicase activity // inferred from mutant phenotype /// 3678 // DNA helicase activity // inferred from sequence similarity /// 4003 // ATP-dependent DNA helicase activity // inferred from direct assay 429.772094726563 213.16423034668 224.797760009766 534.859619140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR031C /GEN=RRM3 /DB_XREF=GI:6321820 /SEG=NC_001140:-170791,172962 /DEF=involved in rDNA replication and Ty1 transposition /NOTE=Rrm3p; go_component: nuclear telomeric heterochromatin [goid GO:0005724] [evidence IPI] [pmid 10693764]; go_function: ATP-dependent DNA helicase activity [goid GO:0004003] [evidence IDA] [pmid 12050116]; go_function: DNA helicase activity [goid GO:0003678] [evidence IMP,ISS] [pmid 10693764]; go_process: DNA replication [goid GO:0006260] [evidence IGI,IMP,IPI] [pmid 10693764] --- --- --- --- --- --- S0001073 // RRM3 SGDID:S0001073, Chr VIII from 172962-170791, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016579 // cdna:Genscan chromosome:SGD1:VIII:170791:172962:-1 // ensembl // 11 // --- /// GENEFINDER00000020103 // cdna:GeneFinder chromosome:SGD1:VIII:170791:172836:-1 // ensembl // 11 // --- /// YHR031C // cdna:known chromosome:SGD1:VIII:170791:172962:-1 gene:YHR031C // ensembl // 11 // --- --- No cerevisiae_gene -1.22561625571349 -2.01615483999169 1.03765274336615 -1.91181662445343 1.24451918982996 Max fold change below threshold 4 2.01615483999169 Max fold change at or above threshold 0.500640303641291 -0.869905688678903 -0.796296692523908 1.16556207756152 350.648426055908 158.044943835258 0.450721954217638 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777942_at YBR220C.S1 Hypothetical protein /// Hypothetical protein 2.0159956298803 224.870506286621 421.164947509766 --- --- --- --- 392.048980712891 194.469161987305 255.271850585938 450.280914306641 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR220C /GEN=PYC2 /DB_XREF=GI:6319697 /SEG=NC_001134:-662952,664634 /DEF=Hypothetical ORF /NOTE=Ybr220cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000423 // span:10-29,65-84,99-118 // numtm:3 /// S0000424 // span:21-43,53-75,95-117,137-159,171-193,213-235,331-350,385-407,420-442,523-542 // numtm:10 S0000424 // YBR220C SGDID:S0000424, Chr II from 664672-662990, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021315 // cdna:Genscan chromosome:SGD1:II:662990:664672:-1 // ensembl // 11 // --- /// YBR220C // cdna:known chromosome:SGD1:II:662990:664672:-1 gene:YBR220C // ensembl // 11 // --- --- No cerevisiae_gene -1.02692218654905 -2.0159956298803 1.58565311250916 -1.53580968607781 1.14853229177605 Max fold change below threshold 4 2.0159956298803 Max fold change at or above threshold 0.582897107282031 -1.0854588681375 -0.57204343178673 1.07460519264219 323.017726898193 118.427854508629 0.366629582982468 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773685_at YLR369W.S1 Mitochondrial hsp70-type molecular chaperone, required for assembly of iron/sulfur clusters into proteins at a step after cluster synthesis, and for maturation of Yfh1p, which is a homolog of human frataxin implicated in Friedreich's ataxia 2.01581451769275 305.209716796875 616.006072998047 SSQ1 6261 // DNA-dependent DNA replication // inferred from mutant phenotype /// 6880 // intracellular sequestering of iron ion // inferred from mutant phenotype 5759 // mitochondrial matrix // inferred from direct assay 51082 // unfolded protein binding // inferred from sequence similarity 585.033813476563 290.222045898438 320.197387695313 646.978332519531 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR369W /GEN=SSQ1 /DB_XREF=GI:6323401 /SEG=NC_001144:+859551,861524 /DEF=Stress seventy Q. involved in the synthesis and assembly of iron/sulfur clusters into proteins. /NOTE=Ssq1p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 8707841]; go_function: chaperone activity [goid GO:0003754] [evidence ISS] [pmid 8707841]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence IMP] [pmid 8707841]; go_process: intracellular iron ion storage [goid GO:0006880] [evidence IMP] [pmid 9660806] --- --- --- --- --- --- S0004361 // SSQ1 SGDID:S0004361, Chr XII from 859551-861524, Verified ORF // sgd // 10 // --- /// GENSCAN00000018098 // cdna:Genscan chromosome:SGD1:XII:859551:861524:1 // ensembl // 10 // --- /// GENEFINDER00000024861 // cdna:GeneFinder chromosome:SGD1:XII:859551:861524:1 // ensembl // 10 // --- /// YLR369W // cdna:known chromosome:SGD1:XII:859551:861524:1 gene:YLR369W // ensembl // 10 // --- --- No cerevisiae_gene -1.1188648111824 -2.01581451769275 1.3924327457535 -1.82710364281066 1.10588194667734 Max fold change below threshold 4 2.01581451769275 Max fold change at or above threshold 0.685072947455323 -0.938122355144452 -0.773082016360769 1.0261314240499 460.607894897461 181.624335103695 0.394314420390314 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769871_at YMR128W.S1 Essential DEAH-box ATP-dependent RNA helicase specific to the U3 snoRNP, predominantly nucleolar in distribution, required for 18S rRNA synthesis 2.01551258666623 195.614151000977 379.574325561523 ECM16 7046 // ribosome biogenesis // inferred from direct assay /// 7046 // ribosome biogenesis // traceable author statement /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5730 // nucleolus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 5739 // mitochondrion // inferred from direct assay 3724 // RNA helicase activity // inferred from direct assay 353.993927001953 175.634689331055 215.593612670898 405.154724121094 0.000244141003349796 0.00122069998178631 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR128W /GEN=ECM16 /DB_XREF=GI:6323776 /SEG=NC_001145:+523695,527498 /DEF=Essential DEAH-box ATP-dependent RNA helicase specific to the U3 snoRNP, predominantly nucleolar in distribution, required for 18S rRNA synthesis /NOTE=Ecm16p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 10982841]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: RNA helicase activity [goid GO:0003724] [evidence IDA] [pmid 10982841]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IPI] [pmid 12068309]; go_process: ribosome biogenesis [goid GO:0007046] [evidence IDA,TAS] [pmid 10982841] --- --- --- --- --- --- S0004735 // ECM16 SGDID:S0004735, Chr XIII from 523695-527498, Verified ORF // sgd // 11 // --- /// GENSCAN00000018821 // cdna:Genscan chromosome:SGD1:XIII:523695:527498:1 // ensembl // 11 // --- /// GENEFINDER00000022028 // cdna:GeneFinder chromosome:SGD1:XIII:523695:527498:1 // ensembl // 11 // --- /// YMR128W // cdna:known chromosome:SGD1:XIII:523695:527498:1 gene:YMR128W // ensembl // 11 // --- --- No cerevisiae_gene 1.55325757889899 -2.01551258666623 -1.04149897835947 -1.6419499753099 1.14452450513045 Max fold change below threshold 4 2.01551258666623 Max fold change at or above threshold 0.606578180780093 -1.02277918513787 -0.657744175299699 1.07394517965748 287.59423828125 109.466002610429 0.380626549629893 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778492_at YJL129C.S1 Component of the Trk1p-Trk2p potassium transport system; 180 kDa high affinity potassium transporter 2.01532806469027 468.957336425781 632.588592529297 TRK1 30007 // potassium ion homeostasis // inferred from direct assay 5886 // plasma membrane // traceable author statement 15079 // potassium ion transporter activity // inferred from direct assay 608.253723144531 425.821594238281 512.093078613281 656.923461914063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL129C /GEN=TRK1 /DB_XREF=GI:6322332 /SEG=NC_001142:-173517,177224 /DEF=180 kDa high affinity potassium transporter /NOTE=Trk1p; go_component: plasma membrane [goid GO:0005886] [evidence TAS] [pmid 3043197]; go_function: potassium ion transporter activity [goid GO:0015079] [evidence IDA] [pmid 3043197]; go_process: potassium ion homeostasis [goid GO:0030007] [evidence IDA] [pmid 3043197] --- --- --- --- --- S0003665 // span:50-72,106-128,778-800,845-867,906-928,972-991,1079-1096,1109-1131 // numtm:8 S0003665 // TRK1 SGDID:S0003665, Chr X from 177224-173517, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024038 // cdna:Genscan chromosome:SGD1:X:173517:177206:-1 // ensembl // 11 // --- /// GENEFINDER00000024386 // cdna:GeneFinder chromosome:SGD1:X:173517:180021:-1 // ensembl // 10 // --- /// YJL129C // cdna:known chromosome:SGD1:X:173517:177224:-1 gene:YJL129C // ensembl // 11 // --- --- No cerevisiae_gene -2.01532806469027 -1.4284238549071 1.00093782339278 -1.18777962161029 1.08001552134843 Max fold change below threshold 4 2.01532806469027 Max fold change at or above threshold 0.559350538526929 -1.21591325260537 -0.376397519623498 1.03296023370193 550.772964477539 102.763392019555 0.186580312846395 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777593_at YEL020W-A.S1 Mitochondrial intermembrane space protein mediating import and insertion of polytopic inner membrane proteins 2.01481582547988 1671.62145996094 1015.33099365234 TIM9 45039 // mitochondrial inner membrane protein import // inferred from genetic interaction /// 45039 // mitochondrial inner membrane protein import // inferred from physical interaction /// 45039 // mitochondrial inner membrane protein import // inferred from sequence similarity 5758 // mitochondrial intermembrane space // inferred from direct assay /// 42719 // mitochondrial intermembrane space protein transporter complex // inferred from direct assay 8565 // protein transporter activity // inferred from physical interaction /// 8565 // protein transporter activity // inferred from genetic interaction /// 8565 // protein transporter activity // inferred from sequence similarity /// 51082 // unfolded protein binding // inferred from direct assay 922.417846679688 1858.50207519531 1484.74084472656 1108.244140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL020W-A /GEN=TIM9 /DB_XREF=GI:6320815 /SEG=NC_001137:+117211,117474 /DEF=Translocase in inner membrane of mitochondria involved in mitochondrial protein import /NOTE=Tim9p; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence IDA] [pmid 9822593]; go_component: mitochondrial intermembrane space protein transporter complex [goid GO:0042719] [evidence IDA] [pmid 9822593]; go_function: chaperone activity [goid GO:0003754] [evidence IDA] [pmid 12138093]; go_function: protein transporter activity [goid GO:0008565] [evidence IGI,IPI,ISS] [pmid 9822593]; go_process: mitochondrial inner membrane protein import [goid GO:0045039] [evidence IPI] [pmid 10469659]; go_process: mitochondrial inner membrane protein import [goid GO:0045039] [evidence IGI,ISS] [pmid 9822593] --- --- --- --- --- --- S0007256 // TIM9 SGDID:S0007256, Chr V from 117211-117474, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019633 // cdna:GeneFinder chromosome:SGD1:V:117211:117474:1 // ensembl // 11 // --- /// YEL020W-A // cdna:known chromosome:SGD1:V:117211:117474:1 gene:YEL020W-A // ensembl // 11 // --- YEL020C-B // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene 1.2421651339578 2.01481582547988 1.24083620251687 1.60961851515666 1.20145565766557 Max fold change below threshold 4 2.01481582547988 Max fold change at or above threshold -1.01346478699447 1.23963940956713 0.340016308111246 -0.566190930683912 1343.47622680664 415.464242596573 0.309245697323656 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778743_at YMR054W.S1 Subunit of vacuolar-ATPase V0 domain, one of two isoforms (Stv1p and Vph1p); Stv1p is located in V-ATPase complexes of the Golgi and endosomes while Vph1p is located in V-ATPase complexes of the vacuole 2.01454626986156 672.462341308594 931.750030517578 STV1 7035 // vacuolar acidification // traceable author statement 220 // hydrogen-transporting ATPase V0 domain // traceable author statement /// 5768 // endosome // inferred from direct assay /// 5794 // Golgi apparatus // inferred from direct assay 46961 // hydrogen-transporting ATPase activity, rotational mechanism // traceable author statement 885.119934082031 583.438110351563 761.486572265625 978.380126953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR054W /GEN=STV1 /DB_XREF=GI:6323699 /SEG=NC_001145:+383302,385974 /DEF=Stv1p and Vph1p may be equivalent subunits for vacuolar-type H(+)-ATPases located on different organelles /NOTE=Stv1p; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 11278748]; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 11948198]; go_component: hydrogen-transporting ATPase V0 domain [goid GO:0000220] [evidence TAS] [pmid 9442887]; go_function: hydrogen-transporting ATPase activity, rotational mechanism [goid GO:0046961] [evidence TAS] [pmid 9442887]; go_process: vacuolar acidification [goid GO:0007035] [evidence TAS] [pmid 9442887] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 3.59999990463257 S0004658 // span:465-487,507-529,585-607,614-636,679-697,793-815,828-850 // numtm:7 S0004658 // STV1 SGDID:S0004658, Chr XIII from 383302-385974, Verified ORF // sgd // 11 // --- /// GENSCAN00000018760 // cdna:Genscan chromosome:SGD1:XIII:383302:385974:1 // ensembl // 11 // --- /// GENEFINDER00000021897 // cdna:GeneFinder chromosome:SGD1:XIII:383338:385974:1 // ensembl // 11 // --- /// YMR054W // cdna:known chromosome:SGD1:XIII:383302:385974:1 gene:YMR054W // ensembl // 11 // --- --- No cerevisiae_gene -2.01454626986156 -1.51707596466176 -1.00954703781815 -1.16235790139879 1.10536447014699 Max fold change below threshold 4 2.01454626986156 Max fold change at or above threshold 0.486274773516675 -1.28090552787237 -0.237940026350275 1.03257078070597 802.106185913086 170.713663735013 0.212831750624987 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778709_at YIL084C.S1 Component of the Rpd3p/Sin3p deacetylase complex required for its structural integrity and catalytic activity, involved in transcriptional silencing and required for sporulation; cells defective in SDS3 display pleiotropic phenotypes 2.01416821968038 186.409202575684 164.20108795166 SDS3 6342 // chromatin silencing // inferred from mutant phenotype /// 6342 // chromatin silencing // inferred from genetic interaction /// 16575 // histone deacetylation // inferred from mutant phenotype /// 16575 // histone deacetylation // inferred from physical interaction 118 // histone deacetylase complex // inferred from physical interaction 5515 // protein binding // inferred from physical interaction 155.984451293945 140.163589477539 232.654815673828 172.417724609375 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL084C /GEN=SDS3 /DB_XREF=GI:6322107 /SEG=NC_001141:-202273,203256 /DEF=Suppressor of Defective Silencing 3Functions are similar to those of SIN3 and RPD3 /NOTE=Sds3p; go_component: histone deacetylase complex [goid GO:0000118] [evidence IPI] [pmid 11024051]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 11024051]; go_process: chromatin silencing [goid GO:0006342] [evidence IGI,IMP] [pmid 11024051]; go_process: histone deacetylation [goid GO:0016575] [evidence IMP,IPI] [pmid 11024051] --- --- --- --- --- --- S0001346 // SDS3 SGDID:S0001346, Chr IX from 203256-202273, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016412 // cdna:Genscan chromosome:SGD1:IX:202273:203256:-1 // ensembl // 11 // --- /// GENEFINDER00000019034 // cdna:GeneFinder chromosome:SGD1:IX:202273:202854:-1 // ensembl // 11 // --- /// YIL084C // cdna:known chromosome:SGD1:IX:202273:203256:-1 gene:YIL084C // ensembl // 11 // --- --- No cerevisiae_gene 1.78721277968798 -1.11287426267677 2.01416821968038 1.49152568569415 1.10535199617084 Max fold change below threshold 4 2.01416821968038 Max fold change at or above threshold -0.477793168515011 -0.869036863371064 1.41823480986216 -0.071404777976084 175.305145263672 40.4373591815379 0.230668410335117 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775694_at YMR308C.S1 Karyopherin/importin that interacts with the nuclear pore complex; acts as the nuclear import receptor for specific proteins, including Pdr1p, Yap1p, Ste12p, and Aft1p 2.01356155215084 892.226989746094 938.849212646484 PSE1 6406 // mRNA-nucleus export // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8320 // protein carrier activity // traceable author statement 882.289123535156 646.620361328125 1137.83361816406 995.409301757813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR308C /GEN=PSE1 /DB_XREF=GI:6323968 /SEG=NC_001145:-888951,892220 /DEF=Functions in nuclear transport of proteins /NOTE=Pse1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9238021]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9238021]; go_function: protein carrier activity [goid GO:0008320] [evidence TAS] [pmid 9238021]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence TAS] [pmid 9238021] --- --- --- --- --- --- S0004925 // PSE1 SGDID:S0004925, Chr XIII from 892220-888951, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018974 // cdna:Genscan chromosome:SGD1:XIII:888951:892220:-1 // ensembl // 11 // --- /// GENEFINDER00000022095 // cdna:GeneFinder chromosome:SGD1:XIII:888951:892220:-1 // ensembl // 11 // --- /// YMR308C // cdna:known chromosome:SGD1:XIII:888951:892220:-1 gene:YMR308C // ensembl // 11 // --- --- No cerevisiae_gene 2.01356155215084 -1.36446232797708 1.2418709238919 1.28963804246503 1.12821214180835 Max fold change below threshold 4 2.01356155215084 Max fold change at or above threshold -0.160206148282528 -1.29574736848175 1.07110386721788 0.384849649546398 915.538101196289 207.538711950663 0.22668495355844 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772621_at YDR405W.S1 Mitochondrial ribosomal protein of the large subunit 2.01336447934163 1150.60974121094 589.430847167969 MRP20 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 573.026672363281 1153.71154785156 1147.50793457031 605.835021972656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR405W /GEN=MRP20 /DB_XREF=GI:6320613 /SEG=NC_001136:+1277634,1278425 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrp20p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0002813 // MRP20 SGDID:S0002813, Chr IV from 1277636-1278427, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023884 // cdna:GeneFinder chromosome:SGD1:IV:1277636:1278427:1 // ensembl // 11 // --- /// GENSCAN00000025421 // cdna:Genscan chromosome:SGD1:IV:1277636:1278427:1 // ensembl // 11 // --- /// YDR405W // cdna:known chromosome:SGD1:IV:1277636:1278427:1 gene:YDR405W // ensembl // 11 // --- --- No cerevisiae_gene 1.97726785911526 2.01336447934163 1.11512516044948 2.00253843305016 1.05725448952327 Max fold change below threshold 4 2.01336447934163 Max fold change at or above threshold -0.915845873945614 0.874825063728038 0.855694842707627 -0.81467403249005 870.020294189453 324.283408677352 0.372730855639945 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1778380_at YGR249W.S1 Protein similar to heat shock transcription factor; multicopy suppressor of pseudohyphal growth defects of ammonium permease mutants 2.01287083779347 2258.56079101563 1106.90124511719 MGA1 30447 // filamentous growth // inferred from genetic interaction --- --- 1132.40112304688 2279.37719726563 2237.74438476563 1081.4013671875 0.00122069998178631 0.00195312988944352 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR249W /GEN=MGA1 /DB_XREF=GI:6321688 /SEG=NC_001139:+988053,989423 /DEF=Mga1p shows similarity to heat shock transcription factor /NOTE=Mga1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: filamentous growth [goid GO:0030447] [evidence IGI] [pmid 9832522] --- --- --- --- --- --- S0003481 // MGA1 SGDID:S0003481, Chr VII from 988054-989424, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021670 // cdna:GeneFinder chromosome:SGD1:VII:988054:989424:1 // ensembl // 11 // --- /// YGR249W // cdna:known chromosome:SGD1:VII:988054:989424:1 gene:YGR249W // ensembl // 11 // --- --- No cerevisiae_gene 1.1371767549207 2.01287083779347 1.00221955602412 1.97610576254523 -1.04716080209147 Max fold change below threshold 4 2.01287083779347 Max fold change at or above threshold -0.826999227322895 0.896600264038717 0.834037237606077 -0.9036382743219 1682.73101806641 665.453940992208 0.395460673065187 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773210_at YNR052C.S1 RNase of the DEDD superfamily, subunit of the Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation 2.01272949553126 1086.99426269531 2156.84252929688 POP2 289 // poly(A) tail shortening // inferred from direct assay /// 289 // poly(A) tail shortening // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay /// 30015 // CCR4-NOT core complex // inferred from physical interaction 175 // 3'-5'-exoribonuclease activity // inferred from direct assay 2101.74609375 1044.22680664063 1129.76171875 2211.93896484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR052C /GEN=POP2 /DB_XREF=GI:6324380 /SEG=NC_001146:-719345,720646 /DEF=RNase of the DEDD superfamily, subunit of the Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation /NOTE=Pop2p; go_component: CCR4-NOT core complex [goid GO:0030015] [evidence IPI] [pmid 10490603]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11889048]; go_function: 3'-5'-exoribonuclease activity [goid GO:0000175] [evidence IDA] [pmid 11410650]; go_process: poly(A) tail shortening [goid GO:0000289] [evidence IDA,IMP] [pmid 11410650]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IPI] [pmid 10490603] --- --- --- --- --- --- S0005335 // POP2 SGDID:S0005335, Chr XIV from 720647-719346, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020079 // cdna:Genscan chromosome:SGD1:XIV:719346:720209:-1 // ensembl // 11 // --- /// GENEFINDER00000020480 // cdna:GeneFinder chromosome:SGD1:XIV:719346:720638:-1 // ensembl // 11 // --- /// YNR052C // cdna:known chromosome:SGD1:XIV:719346:720647:-1 gene:YNR052C // ensembl // 11 // --- --- No cerevisiae_gene -1.83541958689397 -2.01272949553126 -1.45656596180198 -1.86034458317054 1.05242920228159 Max fold change below threshold 4 2.01272949553126 Max fold change at or above threshold 0.773545237949932 -0.931314678251111 -0.793421171372716 0.951190611673895 1621.91839599609 620.296880148285 0.382446417575363 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771778_at YJR143C.S1 Protein O-mannosyltransferase, transfers mannose residues from dolichyl phosphate-D-mannose to protein serine/threonine residues; appears to form homodimers in vivo and does not complex with other Pmt proteins; target for new antifungals 2.01185591815827 476.399520874023 709.269714355469 PMT4 6493 // O-linked glycosylation // inferred from mutant phenotype /// 6493 // O-linked glycosylation // inferred from sequence similarity 5783 // endoplasmic reticulum // traceable author statement 4169 // dolichyl-phosphate-mannose-protein mannosyltransferase activity // inferred from mutant phenotype /// 4169 // dolichyl-phosphate-mannose-protein mannosyltransferase activity // inferred from sequence similarity 689.080139160156 377.719085693359 575.079956054688 729.459289550781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR143C /GEN=PMT4 /DB_XREF=GI:6322603 /SEG=NC_001142:-698241,700529 /DEF=Transfers mannose residues from dolichyl phosphate-D-mannose to specific serine/threonine residues of proteins in the secretory pathway /NOTE=Pmt4p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS] [pmid 8918452]; go_function: dolichyl-phosphate-mannose-protein mannosyltransferase activity [goid GO:0004169] [evidence IMP,ISS] [pmid 8585318]; go_process: O-linked glycosylation [goid GO:0006493] [evidence IMP,ISS] [pmid 8585318] --- --- --- --- --- S0003904 // span:96-118,138-160,167-184,189-211,218-240,245-262,282-304,597-616,636-658,663-685,716-738 // numtm:11 S0003904 // PMT4 SGDID:S0003904, Chr X from 700529-698241, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024247 // cdna:Genscan chromosome:SGD1:X:698241:700529:-1 // ensembl // 11 // --- /// GENEFINDER00000024488 // cdna:GeneFinder chromosome:SGD1:X:698241:700529:-1 // ensembl // 11 // --- /// YJR143C // cdna:known chromosome:SGD1:X:698241:700529:-1 gene:YJR143C // ensembl // 11 // --- --- No cerevisiae_gene 2.01185591815827 -1.8243190912507 -1.24382641785487 -1.19823362282971 1.05859862749758 Max fold change below threshold 4 2.01185591815827 Max fold change at or above threshold 0.610669768089529 -1.36489002170256 -0.112651839621166 0.866872093234196 592.834617614746 157.606494663249 0.265852381052535 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771140_at YDR337W.S1 Mitochondrial ribosomal protein of the small subunit 2.01144352027393 256.135131835938 294.423965454102 MRPS28 28 // ribosomal small subunit assembly and maintenance // inferred from sequence similarity /// 6412 // protein biosynthesis // traceable author statement /// 6412 // protein biosynthesis // inferred from direct assay 5763 // mitochondrial small ribosomal subunit // traceable author statement /// 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3723 // RNA binding // inferred from sequence similarity /// 3735 // structural constituent of ribosome // traceable author statement /// 3735 // structural constituent of ribosome // inferred from direct assay 275.469757080078 192.30517578125 319.965087890625 313.378173828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR337W /GEN=MRPS28 /DB_XREF=GI:6320544 /SEG=NC_001136:+1146309,1147169 /DEF=Mitochondrial ribosomal protein of the small subunit /NOTE=Mrps28p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 11278769]; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence TAS] [pmid 9445368]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 11278769]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 11278769]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368]; go_process: ribosomal small subunit assembly and maintenance [goid GO:0000028] [evidence ISS] [pmid 9445368] --- --- --- --- --- --- S0002745 // MRPS28 SGDID:S0002745, Chr IV from 1146311-1147171, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023772 // cdna:GeneFinder chromosome:SGD1:IV:1146311:1147171:1 // ensembl // 11 // --- /// GENSCAN00000025365 // cdna:Genscan chromosome:SGD1:IV:1146311:1147171:1 // ensembl // 11 // --- /// YDR337W // cdna:known chromosome:SGD1:IV:1146311:1147171:1 gene:YDR337W // ensembl // 11 // --- --- No cerevisiae_gene 1.46352582862659 -1.43246148191783 2.01144352027393 1.16152528423515 1.1376137153852 Max fold change below threshold 4 2.01144352027393 Max fold change at or above threshold 0.00324097283299099 -1.41380527211163 0.761399559793165 0.649164739485471 275.27954864502 58.6886854225978 0.213196678472757 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776284_at SPBC902.05c.S1 --- 2.01136707554111 --- --- --- --- 8.73380279541016 8.35853481292725 9.14015579223633 7.42581844329834 0.0805663987994194 0.274170011281967 0.0952147990465164 0.014160200022161 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC902.05c /GEN=idh2 /DEF=isocitrate dehydrogenase (NAD+) subunit 2 --- --- --- --- --- --- SPBC902.05c // |idh2|glu2|isocitrate dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.69980224467926 -1.04489638326355 -2.01136707554111 1.04652646806265 -1.17614009312229 Max fold change below threshold 4 2.01136707554111 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1779843_at YER147C.S1 Subunit of cohesin loading factor (Scc2p-Scc4p), a complex required for the loading of cohesin complexes onto chromosomes; involved in establishing sister chromatid cohesion during double-strand break repair via phosphorylated histone H2AX 2.01114412037817 550.415939331055 989.457885742188 SCC4 724 // double-strand break repair via homologous recombination // inferred from mutant phenotype /// 7062 // sister chromatid cohesion // inferred from mutant phenotype 790 // nuclear chromatin // inferred from direct assay --- 935.720092773438 465.267547607422 635.564331054688 1043.19567871094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER147C /GEN=SCC4 /DB_XREF=GI:6320995 /SEG=NC_001137:-462963,464837 /DEF=a major role for the Scc2p/Scc4p complex appears to be to facilitate the loading of cohesin complexes onto chromosomes. /NOTE=Scc4p; go_component: nuclear chromatin [goid GO:0000790] [evidence IDA] [pmid 10882066]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: sister chromatid cohesion [goid GO:0007062] [evidence IMP] [pmid 10882066] --- --- --- --- --- --- S0000949 // SCC4 SGDID:S0000949, Chr V from 464837-462963, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016926 // cdna:Genscan chromosome:SGD1:V:462963:464837:-1 // ensembl // 11 // --- /// GENEFINDER00000019737 // cdna:GeneFinder chromosome:SGD1:V:462963:464702:-1 // ensembl // 11 // --- /// YER147C // cdna:known chromosome:SGD1:V:462963:464837:-1 gene:YER147C // ensembl // 11 // --- --- No cerevisiae_gene -1.36224081963851 -2.01114412037817 -1.07584745022302 -1.47226653078636 1.11485869200366 Max fold change below threshold 4 2.01114412037817 Max fold change at or above threshold 0.622123787734705 -1.14331296483591 -0.504251271086825 1.02544044818803 769.936912536621 266.479410537364 0.346105513579581 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776173_at YPR030W.S1 Nuclear protein with a potential regulatory role in utilization of galactose and nonfermentable carbon sources; overproduction suppresses the lethality at high temperature of a chs5 spa2 double null mutation; potential Cdc28p substrate 2.01111605953321 4821.73400878906 3572.7021484375 CSR2 6357 // regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from genetic interaction 5634 // nucleus // inferred from direct assay --- 3883.4609375 5938.84716796875 3704.62084960938 3261.943359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR030W /GEN=CSR2 /DB_XREF=GI:6325287 /SEG=NC_001148:+627875,631240 /DEF=Nuclear protein with a potential regulatory role in utilization of galactose and nonfermentable carbon sources; overproduction suppresses the lethality at high temperature of a chs5 spa2 double null mutation; potential Cdc28p substrate /NOTE=Csr2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12444972]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IGI] [pmid 10679005]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IGI,IMP] [pmid 12444972] --- --- --- --- --- --- S0006234 // CSR2 SGDID:S0006234, Chr XVI from 627877-631242, Verified ORF // sgd // 11 // --- /// GENSCAN00000017209 // cdna:Genscan chromosome:SGD1:XVI:627877:631242:1 // ensembl // 11 // --- /// GENEFINDER00000020761 // cdna:GeneFinder chromosome:SGD1:XVI:628654:631242:1 // ensembl // 11 // --- /// YPR030W // cdna:known chromosome:SGD1:XVI:627877:631242:1 gene:YPR030W // ensembl // 11 // --- --- No cerevisiae_gene -2.01111605953321 1.52926661644031 -1.13783836079634 -1.04827486945377 -1.1905359810552 Max fold change below threshold 4 2.01111605953321 Max fold change at or above threshold -0.263636447330205 1.46341499688397 -0.413907976591376 -0.785870572962388 4197.21807861328 1190.11291606543 0.283548029617426 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777318_at YML119W.S1 Protein of unknown function, potential Cdc28p substrate 2.01041067828005 565.452972412109 1153.55377197266 --- --- --- --- 1134.24096679688 566.722229003906 564.183715820313 1172.86657714844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML119W /GEN=NDI1 /DB_XREF=GI:6323516 /SEG=NC_001145:+30611,31684 /DEF=Protein of unknown function, potential Cdc28p substrate /NOTE=Yml119wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004588 // YML119W SGDID:S0004588, Chr XIII from 30611-31684, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018616 // cdna:Genscan chromosome:SGD1:XIII:30611:31684:1 // ensembl // 11 // --- /// GENEFINDER00000021863 // cdna:GeneFinder chromosome:SGD1:XIII:30917:31684:1 // ensembl // 11 // --- /// YML119W // cdna:known chromosome:SGD1:XIII:30611:31684:1 gene:YML119W // ensembl // 11 // --- --- No cerevisiae_gene 1.45111250877396 -2.00140546593781 -1.6255131171412 -2.01041067828005 1.03405414852952 Max fold change below threshold 4 2.01041067828005 Max fold change at or above threshold 0.808271161594752 -0.861354832194196 -0.868823074764277 0.92190674536372 859.503372192383 339.907703823583 0.395469889730114 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773549_at SPBC1289.14.S1 --- 2.01040843684979 --- --- --- --- 0.951939225196838 0.565234959125519 1.00743770599365 0.492138355970383 0.567627012729645 0.822998046875 0.633789002895355 0.295166015625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1289.14 /DEF=adducin N-terminal domain protein --- --- --- --- --- --- SPBC1289.14 // ||SPBC8E4.10c|adducin N-terminal domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.93795386481279 -1.6841478217653 2.01040843684979 1.0583004453728 -1.9342918787946 Max fold change below threshold 0 2.01040843684979 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779789_at YOR153W.S1 Short-lived membrane ABC (ATP-binding cassette) transporter, actively exports various drugs, expression regulated by Pdr1p; also involved in steroid transport, cation resistance, and cellular detoxification during exponential growth 2.01023136361946 3870.63891601563 2310.81860351563 PDR5 15893 // drug transport // traceable author statement /// 42493 // response to drug // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 8559 // xenobiotic-transporting ATPase activity // traceable author statement 2376.17626953125 4776.6640625 2964.61376953125 2245.4609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR153W /GEN=PDR5 /DB_XREF=GI:6324727 /SEG=NC_001147:+619840,624375 /DEF=multidrug efflux transporter which mediates pleiotropic drug resistance to hundreds of unrelated compounds /NOTE=Pdr5p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 8810273]; go_function: xenobiotic-transporting ATPase activity [goid GO:0008559] [evidence TAS] [pmid 11421285]; go_process: drug transport [goid GO:0015893] [evidence TAS] [pmid 11421285]; go_process: response to drug [goid GO:0042493] [evidence TAS] [pmid 11421285] --- --- --- --- --- S0005679 // span:520-542,554-576,604-626,633-652,662-684,696-718,774-793,1206-1228,1238-1260,1281-1303,1326-1348,1355-1377,1382-1404,1477-1499 // numtm:14 S0005679 // PDR5 SGDID:S0005679, Chr XV from 619840-624375, Verified ORF // sgd // 11 // --- /// GENSCAN00000017577 // cdna:Genscan chromosome:SGD1:XV:619840:624375:1 // ensembl // 11 // --- /// GENEFINDER00000022748 // cdna:GeneFinder chromosome:SGD1:XV:619840:624375:1 // ensembl // 11 // --- /// YOR153W // cdna:known chromosome:SGD1:XV:619840:624375:1 gene:YOR153W // ensembl // 11 // --- --- No cerevisiae_gene -1.88075122469475 2.01023136361946 1.52241057009388 1.24764050863789 -1.05821314004989 Max fold change below threshold 4 2.01023136361946 Max fold change at or above threshold -0.612472628968566 1.4450851984267 -0.108098398195851 -0.724514171262287 3090.72875976563 1166.66844596422 0.377473578772628 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775219_at YHR112C.S1 Hypothetical protein 2.01019256562486 644.760650634766 418.353485107422 --- 6790 // sulfur metabolism // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay 4121 // cystathionine beta-lyase activity // inferred from sequence similarity 394.311218261719 513.679870605469 775.841430664063 442.395751953125 0.000244141003349796 0.000244140625 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR112C /GEN=UBA4 /DB_XREF=GI:6321904 /SEG=NC_001140:-334529,335665 /DEF=Hypothetical ORF /NOTE=Yhr112cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: cystathionine beta-lyase activity [goid GO:0004121] [evidence ISS] [pmid 10821189]; go_process: sulfur metabolism [goid GO:0006790] [evidence ISS] [pmid 10821189] --- --- --- --- --- --- S0001154 // YHR112C SGDID:S0001154, Chr VIII from 335665-334529, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016649 // cdna:Genscan chromosome:SGD1:VIII:334529:335665:-1 // ensembl // 11 // --- /// GENEFINDER00000020258 // cdna:GeneFinder chromosome:SGD1:VIII:334529:335665:-1 // ensembl // 11 // --- /// YHR112C // cdna:known chromosome:SGD1:VIII:334529:335665:-1 gene:YHR112C // ensembl // 11 // --- --- No cerevisiae_gene -1.02098816287179 1.30272700043883 2.01019256562486 1.96758650206373 1.12194563954681 Max fold change below threshold 4 2.01019256562486 Max fold change at or above threshold -0.806953489888807 -0.105111132788247 1.43629930990339 -0.524234687226335 531.557067871094 170.079008677794 0.319963779917305 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776373_at SPAC23A1.02c.S1 --- 2.01011192408651 --- --- --- --- 4.94379901885986 3.16288447380066 3.19473147392273 6.66415023803711 0.0375977009534836 0.366210997104645 0.466064006090164 0.043701171875 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23A1.02c /DEF=calcineurin-like phosphoesterase --- --- --- --- --- --- SPAC23A1.02c // |||calcineurin-like phosphoesterase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -2.01011192408651 -1.56306658046197 -1.59394130308751 -1.54748499497189 1.34798162559084 Max fold change below threshold 4 2.01011192408651 Max fold change at or above threshold PAAAAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1774568_at SPCC16C4.05.S1 --- 2.00975118918766 --- --- --- --- 0.450308233499527 0.762507557868958 0.657174825668335 0.38570562005043 0.99804699420929 0.969726979732513 0.932372987270355 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16C4.05 /DEF=RNase P and RNase MRP subunit (predicted) --- --- --- --- --- --- SPCC16C4.05 // |||RNase P and RNase MRP subunit |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.86102272314387 1.69330139034591 -2.00975118918766 1.45938887361922 -1.16749202005574 Max fold change below threshold 0 2.00975118918766 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779366_at SPBC12C2.06.S1 --- 2.00955517407411 --- --- --- --- 7.62519025802612 4.15216398239136 4.64485216140747 4.35845756530762 0.0676269978284836 0.2958984375 0.274170011281967 0.0239257998764515 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12C2.06 /DEF=DEADDEAH box helicase --- --- --- --- --- --- SPBC12C2.06 // |||ATP-dependent RNA helicase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -2.00955517407411 -1.8364376480224 -1.99760816922574 -1.64164326291831 -1.74951577336005 Max fold change below threshold 4 2.00955517407411 Max fold change at or above threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1771265_at YKR049C.S1 The authentic, non-tagged protein was localized to the mitochondria 2.00898467166329 2610.90344238281 2365.5498046875 --- --- 5739 // mitochondrion // inferred from direct assay --- 2345.30297851563 2603.79907226563 2618.0078125 2385.79663085938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR049C /GEN=NAP1 /DB_XREF=GI:6322902 /SEG=NC_001143:-526472,526873 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ykr049cp --- --- --- --- --- --- S0001757 // FMP46 SGDID:S0001757, Chr XI from 526873-526472, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YKR049C // cdna:known chromosome:SGD1:XI:526472:526873:-1 gene:YKR049C // ensembl // 11 // --- GENSCAN00000018458 // ensembl // 7 // Cross Hyb Matching Probes /// GENEFINDER00000022969 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -2.00898467166329 1.11021863533965 1.18900507694849 1.11627701686414 1.01726585124169 Max fold change below threshold 4 2.00898467166329 Max fold change at or above threshold -1.00132673253091 0.809703547947314 0.909250347431213 -0.717627162847613 2488.22662353516 142.734274813859 0.0573638564364644 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1775614_at YLR293C.S1 GTP binding protein (mammalian Ranp homolog) involved in the maintenance of nuclear organization, RNA processing and transport; regulated by Prp20p, Rna1p, Yrb1p, Yrb2p, Yrp4p, Yrb30p, Cse1p and Kap95p; yeast Gsp2p homolog 2.00860721145081 2379.97302246094 2337.47045898438 GSP1 6364 // rRNA processing // inferred from mutant phenotype /// 6913 // nucleocytoplasmic transport // traceable author statement /// 6997 // nuclear organization and biogenesis // inferred from genetic interaction /// 6997 // nuclear organization and biogenesis // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // traceable author statement 3924 // GTPase activity // inferred from genetic interaction /// 3924 // GTPase activity // inferred from sequence similarity 2346.041015625 2245.01220703125 2514.93383789063 2328.89990234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR293C /GEN=GSP1 /DB_XREF=GI:6323324 /SEG=NC_001144:-720773,721432 /DEF=GTP binding protein (mammalian Ranp homolog) involved in the maintenance of nuclear organization, RNA processing and transport; regulated by Prp20p, Rna1p, Yrb1p, Yrb2p, Yrp4p, Yrb30p, Cse1p and Kap95p; yeast Gsp2p homolog /NOTE=Gsp1p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 11591812]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8455603]; go_function: GTPase activity [goid GO:0003924] [evidence IGI,ISS] [pmid 8455603]; go_process: nuclear organization and biogenesis [goid GO:0006997] [evidence IGI,ISS] [pmid 8455603]; go_process: nucleocytoplasmic transport [goid GO:0006913] [evidence TAS] [pmid 11591812]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 11404326] --- --- --- --- --- --- S0004284 // GSP1 SGDID:S0004284, Chr XII from 721432-720773, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018047 // cdna:Genscan chromosome:SGD1:XII:720773:721432:-1 // ensembl // 11 // --- /// GENEFINDER00000024847 // cdna:GeneFinder chromosome:SGD1:XII:720773:721432:-1 // ensembl // 11 // --- /// YLR293C // cdna:known chromosome:SGD1:XII:720773:721432:-1 gene:YLR293C // ensembl // 11 // --- --- No cerevisiae_gene 2.00860721145081 -1.04500145178602 -1.24206303479751 1.07199056672103 -1.00736017604879 Max fold change below threshold 4 2.00860721145081 Max fold change at or above threshold -0.11210879092101 -1.00529253967437 1.38105267686728 -0.263651346271901 2358.72174072266 113.110889819433 0.0479543168940219 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774409_at YDR423C.S1 AP-1-like bZIP transcriptional activator involved in multiple stress responses, iron metabolism, and pleiotropic drug resistance; controls a set of genes involved in stabilizing proteins, binds consensus sequence TTACTAA; 5' UTR contains uORFs 2.00823218449558 1782.97320556641 978.681243896484 CAD1 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 46686 // response to cadmium ion // inferred from mutant phenotype 5634 // nucleus // inferred from curator /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3702 // RNA polymerase II transcription factor activity // inferred from direct assay 959.547241210938 1638.95275878906 1926.99365234375 997.815246582031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR423C /GEN=CAD1 /DB_XREF=GI:6320631 /SEG=NC_001136:-1318034,1319263 /DEF=Transcriptional activator involved in resistance to 1,10-phenanthroline; member of yeast Jun-family of transcription factors related to mammalian c-jun /NOTE=Cad1p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 9372930]; go_function: RNA polymerase II transcription factor activity [goid GO:0003702] [evidence IDA] [pmid 9372930]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IDA] [pmid 9372930]; go_process: response to cadmium ion [goid GO:0046686] [evidence IMP] [pmid 8360174] --- --- --- --- --- --- S0002831 // CAD1 SGDID:S0002831, Chr IV from 1319265-1318036, reverse complement, Verified ORF // sgd // 10 // --- /// X69106 // S.cerevisiae YAP2 mRNA. // gb // 10 // --- /// GENEFINDER00000023462 // cdna:GeneFinder chromosome:SGD1:IV:1318036:1319217:-1 // ensembl // 10 // --- /// GENSCAN00000025435 // cdna:Genscan chromosome:SGD1:IV:1318036:1319217:-1 // ensembl // 10 // --- /// YDR423C // cdna:known chromosome:SGD1:IV:1318036:1319265:-1 gene:YDR423C // ensembl // 10 // --- --- No cerevisiae_gene -1.08254381603254 1.70804801306158 1.20958103638509 2.00823218449558 1.03988131456957 Max fold change below threshold 4 2.00823218449558 Max fold change at or above threshold -0.879001945404426 0.538579698705664 1.13957788446037 -0.799155637761611 1380.82722473145 479.270820415168 0.347089637161796 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774776_at YPL148C.S1 Phosphopantetheine:protein transferase (PPTase), activates mitochondrial acyl carrier protein (Acp1p) by phosphopantetheinylation 2.00823040751221 344.326187133789 195.033569335938 PPT2 18065 // protein-cofactor linkage // inferred from direct assay 5739 // mitochondrion // inferred from mutant phenotype 8897 // phosphopantetheinyltransferase activity // inferred from direct assay 186.311157226563 374.155731201172 314.496643066406 203.755981445313 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL148C /GEN=PPT2 /DB_XREF=GI:37362701 /SEG=NC_001148:-272293,272814 /DEF=Phosphopantetheine:protein transferase (PPTase), activates mitochondrial acyl carrier protein (Acp1p) by phosphopantetheinylation /NOTE=Ppt2p; go_component: mitochondrion [goid GO:0005739] [evidence IMP] [pmid 9712852]; go_function: holo-[acyl-carrier protein] synthase activity [goid GO:0008897] [evidence IDA] [pmid 9712852]; go_process: protein-cofactor linkage [goid GO:0018065] [evidence IDA] [pmid 9712852] --- --- --- --- --- --- S0006069 // PPT2 SGDID:S0006069, Chr XVI from 272814-272293, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020784 // cdna:GeneFinder chromosome:SGD1:XVI:272293:272814:-1 // ensembl // 11 // --- /// YPL148C // cdna:known chromosome:SGD1:XVI:272293:272814:-1 gene:YPL148C // ensembl // 11 // --- --- No cerevisiae_gene 1.34389457307761 2.00823040751221 1.30284867725769 1.6880183009328 1.09363274040285 Max fold change below threshold 4 2.00823040751221 Max fold change at or above threshold -0.927846743629067 1.16275719226887 0.498785261498692 -0.733695710138496 269.679878234863 89.8518225997351 0.333179557881154 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779039_at YJR011C.S1 Hypothetical protein 2.00740321865366 127.190773010254 92.8583984375 --- --- --- --- 78.4146270751953 128.864318847656 125.517227172852 107.302169799805 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR011C /GEN=SPC1 /DB_XREF=GI:6322471 /SEG=NC_001142:-458555,459340 /DEF=Hypothetical ORF /NOTE=Yjr011cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003772 // YJR011C SGDID:S0003772, Chr X from 459340-458555, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024143 // cdna:Genscan chromosome:SGD1:X:458555:459340:-1 // ensembl // 11 // --- /// YJR011C // cdna:known chromosome:SGD1:X:458555:459340:-1 gene:YJR011C // ensembl // 11 // --- --- No cerevisiae_gene 1.3415406673035 1.6433709328756 2.00740321865366 1.6006864006697 1.36839482379873 Max fold change below threshold 4 2.00740321865366 Max fold change at or above threshold -1.36808521457196 0.815387347373167 0.670524562735891 -0.1178266955371 110.024585723877 23.1052556609726 0.210000842165938 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770357_at YDR318W.S1 Protein involved in minichromosome maintenance; component of the COMA complex that bridges kinetochore subunits that are in contact with centromeric DNA and the subunits bound to microtubules 2.00662502718318 197.894805908203 418.046615600586 MCM21 7059 // chromosome segregation // inferred from physical interaction 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 817 // COMA complex // inferred from direct assay 5515 // protein binding // inferred from direct assay 393.248382568359 195.975021362305 199.814590454102 442.844848632813 0.000732421991415322 0.000244141003349796 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR318W /GEN=MCM21 /DB_XREF=GI:37362633 /SEG=NC_001136:+1103751,1104940 /DEF=Involved in minichromosome maintenance /NOTE=Mcm21p; go_component: COMA complex [goid GO:0000817] [evidence IDA] [pmid 14633972]; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IDA] [pmid 10323865]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 10323865]; go_process: chromosome segregation [goid GO:0007059] [evidence IPI] [pmid 10323865] --- --- --- --- --- --- S0002726 // MCM21 SGDID:S0002726, Chr IV from 1103753-1103804,1103888-1104942, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000025348 // cdna:Genscan chromosome:SGD1:IV:1104187:1104942:1 // ensembl // 11 // --- /// YDR318W // cdna:known chromosome:SGD1:IV:1103753:1104942:1 gene:YDR318W // ensembl // 11 // --- --- No cerevisiae_gene -1.05115285353008 -2.00662502718318 1.52105574104163 -1.96806640433342 1.12611994928125 Max fold change below threshold 4 2.00662502718318 Max fold change at or above threshold 0.662521347204258 -0.870093348455677 -0.840263776033362 1.04783577728478 307.970710754395 128.716866518828 0.417951649374475 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1772098_at YMR005W.S1 TFIID subunit (48 kDa), involved in RNA polymerase II transcription initiation; potential Cdc28p substrate 2.00645171173211 542.599945068359 994.639495849609 TAF4 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 5669 // transcription factor TFIID complex // inferred from direct assay 3702 // RNA polymerase II transcription factor activity // inferred from direct assay 1023.30041503906 575.194885253906 510.005004882813 965.978576660156 0.00195312988944352 0.00415039015933871 0.00292969006113708 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR005W /GEN=TAF4 /DB_XREF=GI:6323647 /SEG=NC_001145:+276045,277211 /DEF=TFIID subunit (48 kDa), involved in RNA polymerase II transcription initiation; potential Cdc28p substrate /NOTE=Taf4p; go_component: transcription factor TFIID complex [goid GO:0005669] [evidence IDA] [pmid 10788514]; go_function: RNA polymerase II transcription factor activity [goid GO:0003702] [evidence IDA] [pmid 10751405]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IDA] [pmid 10751405] --- --- --- --- --- --- S0004607 // TAF4 SGDID:S0004607, Chr XIII from 276045-277211, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022050 // cdna:GeneFinder chromosome:SGD1:XIII:276045:277211:1 // ensembl // 11 // --- /// YMR005W // cdna:known chromosome:SGD1:XIII:276045:277211:1 gene:YMR005W // ensembl // 11 // --- --- No cerevisiae_gene -1.68479805691678 -1.77904992077138 -1.34504851463662 -2.00645171173211 -1.05934069322437 Max fold change below threshold 4 2.00645171173211 Max fold change at or above threshold 0.966969496151237 -0.734393770009849 -0.98190615362625 0.749330427484862 768.619720458984 263.380277861677 0.342666562997366 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777892_at YMR176W.S1 Non-essential protein of unknown function, contains ATP/GTP-binding site motif A; null mutant exhibits cellular volume up to four times greater than wild-type, also large drooping buds with elongated necks 2.00630438821836 414.310440063477 851.243957519531 ECM5 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 821.839904785156 418.992156982422 409.628723144531 880.648010253906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR176W /GEN=ECM5 /DB_XREF=GI:6323830 /SEG=NC_001145:+611739,615974 /DEF=Non-essential protein of unknown function, contains ATP/GTP-binding site motif A; null mutant exhibits cellular volume up to four times greater than wild-type, also large drooping buds with elongated necks /NOTE=Ecm5p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 9.10000038146973 /// scop // a.4.3.ARID domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; ARID-like; ARID domain // 7.00649232162409E-43 --- S0004788 // ECM5 SGDID:S0004788, Chr XIII from 611739-615974, Verified ORF // sgd // 11 // --- /// GENSCAN00000018861 // cdna:Genscan chromosome:SGD1:XIII:612504:615974:1 // ensembl // 11 // --- /// GENEFINDER00000021774 // cdna:GeneFinder chromosome:SGD1:XIII:612744:615974:1 // ensembl // 11 // --- /// YMR176W // cdna:known chromosome:SGD1:XIII:611739:615974:1 gene:YMR176W // ensembl // 11 // --- --- No cerevisiae_gene -1.6987276471543 -1.9614684692526 -1.01652812014291 -2.00630438821836 1.07155664397207 Max fold change below threshold 4 2.00630438821836 Max fold change at or above threshold 0.746008449622655 -0.843558473122999 -0.880504949287281 0.978054972787624 632.777198791504 253.432392205857 0.400508097778918 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777207_at YGR109C.S1 B-type cyclin involved in DNA replication during S phase; activates Cdc28p to promote initiation of DNA synthesis; functions in formation of mitotic spindles along with Clb3p and Clb4p; most abundant during late G1 2.00623349543548 17.2169146537781 32.0877895355225 CLB6 79 // regulation of cyclin dependent protein kinase activity // traceable author statement /// 82 // G1/S transition of mitotic cell cycle // inferred from genetic interaction /// 6279 // premeiotic DNA synthesis // inferred from genetic interaction /// 6279 // premeiotic DNA synthesis // inferred from mutant phenotype --- 16538 // cyclin-dependent protein kinase regulator activity // inferred from expression pattern /// 16538 // cyclin-dependent protein kinase regulator activity // inferred from mutant phenotype 30.5151100158691 19.2236804962158 15.2101488113403 33.6604690551758 0.00585938012227416 0.004150390625 0.0107421996071935 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR109C /GEN=CLB6 /DB_XREF=GI:6321546 /SEG=NC_001139:-705361,706503 /DEF=role in DNA replication during S phase /NOTE=Clb6p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence IEP,IMP] [pmid 8319908]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IGI] [pmid 8319908]; go_process: premeiotic DNA synthesis [goid GO:0006279] [evidence IGI,IMP] [pmid 9732268]; go_process: regulation of cyclin dependent protein kinase activity [goid GO:0000079] [evidence TAS] --- --- --- --- --- --- S0003341 // CLB6 SGDID:S0003341, Chr VII from 706505-705363, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019423 // cdna:Genscan chromosome:SGD1:VII:705363:706175:-1 // ensembl // 11 // --- /// YGR109C // cdna:known chromosome:SGD1:VII:705363:706505:-1 gene:YGR109C // ensembl // 11 // --- --- No cerevisiae_gene 1.10740593645511 -1.58737084825541 -2.00007675915353 -2.00623349543548 1.10307546122793 Max fold change below threshold 4 2.00623349543548 Max fold change at or above threshold 0.663622767047638 -0.614487262813166 -1.0687906876076 1.01965518337313 24.6523520946503 8.83447375879137 0.358362306560943 PPPPPP Called_P_>2EXP 2 0 PPPP 0 4 0 Yes Yes 3 < x
1775263_at YGL027C.S1 Processing alpha glucosidase I, ER type II integral membrane N-glycoprotein involved in assembly of cell wall beta 1,6 glucan and asparagine-linked protein glycosylation; also involved in ER protein quality control and sensing of ER stress 2.00601233157885 239.796325683594 200.564407348633 CWH41 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from sequence similarity 5789 // endoplasmic reticulum membrane // inferred from direct assay 4573 // mannosyl-oligosaccharide glucosidase activity // inferred from mutant phenotype /// 4573 // mannosyl-oligosaccharide glucosidase activity // inferred from direct assay /// 4573 // mannosyl-oligosaccharide glucosidase activity // inferred from sequence similarity 195.485473632813 184.251678466797 295.340972900391 205.643341064453 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL027C /GEN=CWH41 /DB_XREF=GI:6321411 /SEG=NC_001139:-443645,446146 /DEF=Processing alpha glucosidase I, involved in assembly of cell wall beta 1,6 glucan and asparagine-linked protein glycosylation; ER type II integral membrane N-glycoprotein; disruption leads to a K1 killer toxin-resistant phenotype /NOTE=Cwh41p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 8576053]; go_function: mannosyl-oligosaccharide glucosidase activity [goid GO:0004573] [evidence IMP,ISS] [pmid 9430631]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP,ISS] [pmid 9430631] --- --- --- --- --- --- S0002995 // CWH41 SGDID:S0002995, Chr VII from 446148-443647, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019319 // cdna:Genscan chromosome:SGD1:VII:443647:446148:-1 // ensembl // 11 // --- /// GENEFINDER00000021517 // cdna:GeneFinder chromosome:SGD1:VII:443647:446148:-1 // ensembl // 11 // --- /// YGL027C // cdna:known chromosome:SGD1:VII:443647:446148:-1 gene:YGL027C // ensembl // 11 // --- --- No cerevisiae_gene 2.00601233157885 -1.06096983896969 1.09753892958549 1.51080777211682 1.05196226217156 Max fold change below threshold 4 2.00601233157885 Max fold change at or above threshold -0.485517322337026 -0.706380890138722 1.47770539153049 -0.285807179054743 220.180366516113 50.863052144942 0.23100630155968 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1773020_at YIL108W.S1 Putative metalloprotease 2.00600976361451 1568.30157470703 2505.6640625 --- 6508 // proteolysis and peptidolysis // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay 4222 // metalloendopeptidase activity // inferred from sequence similarity 2583.21923828125 1287.74011230469 1848.86303710938 2428.10888671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL108W /GEN=SEC24 /DB_XREF=GI:6322083 /SEG=NC_001141:+160884,162974 /DEF=Hypothetical ORF /NOTE=Yil108wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001370 // YIL108W SGDID:S0001370, Chr IX from 160884-162974, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016396 // cdna:Genscan chromosome:SGD1:IX:160884:162974:1 // ensembl // 11 // --- /// GENEFINDER00000019120 // cdna:GeneFinder chromosome:SGD1:IX:160884:162974:1 // ensembl // 11 // --- /// YIL108W // cdna:known chromosome:SGD1:IX:160884:162974:1 gene:YIL108W // ensembl // 11 // --- --- No cerevisiae_gene -1.84996717800901 -2.00600976361451 -1.13145851672582 -1.39719340288181 -1.06388113498984 Max fold change below threshold 4 2.00600976361451 Max fold change at or above threshold 0.924141265776654 -1.26759417356577 -0.318267414483621 0.661720322272741 2036.98281860352 591.074589899061 0.290171612887869 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769765_at YBR084C-A.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl19Bp and has similarity to rat L19 ribosomal protein; rpl19a and rpl19b single null mutations result in slow growth, while the double null mutation is lethal /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl19Bp and has similarity to rat L19 ribosomal protein; rpl19a and rpl19b single null mutations result in slow growth, while the double null mutation is lethal 2.00523277629505 1938.91510009766 3339.12365722656 RPL19B /// RPL19A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3574.22192382813 1782.44738769531 2095.3828125 3104.025390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR084C-A /GEN=RPL19A /DB_XREF=GI:6319559 /SEG=NC_001134:-414143,415218 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl19Bp and has similarity to rat L19 ribosomal protein; rpl19a and rpl19b single null mutations result in slow growth, while the double null mutation is lethal /NOTE=Rpl19ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0002156 // RPL19A SGDID:S0002156, Chr II from 415255-415254,414747-414180, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// D17337 // Saccharomyces cerevisiae mRNA for ribosomal protein YL14, complete cds. // gb // 11 // --- /// YBR084C-A // cdna:known chromosome:SGD1:II:414180:415255:-1 gene:YBR084C-A // ensembl // 11 // --- GENEFINDER00000022225 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 1.07947356330899 -2.00523277629505 -1.31245783150244 -1.70576082924138 -1.15147960278394 Max fold change below threshold 4 2.00523277629505 Max fold change at or above threshold 1.11247199926564 -1.01893687119577 -0.646683930404518 0.55314880233465 2639.01937866211 840.652659827267 0.318547361426898 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779793_at SPBC3H7.12.S1 --- 2.00514684375479 --- --- --- --- 7.71130752563477 10.272346496582 3.84575700759888 4.24579048156738 0.171387001872063 0.111571997404099 0.24609400331974 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3H7.12 /DEF=sequence orphan --- --- --- --- --- --- SPBC3H7.12 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.23110400188377 1.33211474998677 1.32090411299087 -2.00514684375479 -1.81622422470269 Max fold change below threshold 4 2.00514684375479 Max fold change at or above threshold APAPAP No 4 0 AAAP 3 1 0 No No x = 1
1777795_at YAL043C.S1 Subunit of holo-CPF, a multiprotein complex and functional homolog of mammalian CPSF, required for the cleavage and polyadenylation of mRNA and snoRNA 3' ends; involved in pre-tRNA processing; binds to the phosphorylated CTD of RNAPII 2.00391553293219 824.763977050781 1574.54614257813 PTA1 6378 // mRNA polyadenylylation // inferred from mutant phenotype /// 6379 // mRNA cleavage // inferred from mutant phenotype /// 8033 // tRNA processing // inferred from mutant phenotype /// 30846 // transcription termination from Pol II promoter, RNA polymerase(A) coupled // inferred from physical interaction /// 30847 // transcription termination from Pol II promoter, RNA polymerase(A)-independent // inferred from physical interaction 5847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from physical interaction /// 5849 // mRNA cleavage factor complex // inferred from physical interaction 3723 // RNA binding // inferred from curator 1518.55297851563 757.792907714844 891.735046386719 1630.53930664063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL043C /GEN=PTA1 /DB_XREF=GI:6319273 /SEG=NC_001133:-58698,61055 /DEF=pre-tRNA processing /NOTE=Pta1p; go_component: mRNA cleavage and polyadenylation specificity factor complex [goid GO:0005847] [evidence TAS] [pmid 11344258]; go_component: mRNA cleavage factor complex [goid GO:0005849] [evidence IPI] [pmid 9099738]; go_function: cleavage/polyadenylation specificity factor activity [goid GO:0030364] [evidence IPI,TAS] [pmid 11344258]; go_process: mRNA cleavage [goid GO:0006379] [evidence IDA,TAS] [pmid 11344258]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IDA,TAS] [pmid 11344258]; go_process: tRNA processing [goid GO:0008033] [evidence IMP] [pmid 1508188]; go_process: transcription termination from Pol II promoter, poly(A) coupled [goid GO:0030846] [evidence IPI] [pmid 12819204]; go_process: transcription termination from Pol II promoter, poly(A)-independent [goid GO:0030847] [evidence IPI] [pmid 12819204] --- --- --- --- --- --- S0000041 // PTA1 SGDID:S0000041, Chr I from 61053-58696, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000018192 // cdna:GeneFinder chromosome:SGD1:I:58696:61053:-1 // ensembl // 10 // --- /// GENSCAN00000020339 // cdna:Genscan chromosome:SGD1:I:58696:61038:-1 // ensembl // 10 // --- /// YAL043C // cdna:known chromosome:SGD1:I:58696:61053:-1 gene:YAL043C // ensembl // 10 // --- --- No cerevisiae_gene -1.15292384225093 -2.00391553293219 -1.3175909284398 -1.70291947666378 1.07374542061382 Max fold change below threshold 4 2.00391553293219 Max fold change at or above threshold 0.726889930277665 -1.00717229588756 -0.701867099049088 0.982149464658984 1199.65505981445 438.715554333455 0.365701416206513 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779734_at YMR217W.S1 GMP synthase, an enzyme that catalyzes the second step in the biosynthesis of GMP from inosine 5'-phosphate (IMP); transcription is not subject to regulation by guanine but is negatively regulated by nutrient starvation 2.00384320682381 3121.4404296875 2514.77563476563 GUA1 46037 // GMP metabolism // traceable author statement --- 3922 // GMP synthase (glutamine-hydrolyzing) activity // inferred from mutant phenotype /// 3922 // GMP synthase (glutamine-hydrolyzing) activity // inferred from sequence similarity 2567.18188476563 3252.35498046875 2990.52587890625 2462.36938476563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR217W /GEN=GUA1 /DB_XREF=GI:6323873 /SEG=NC_001145:+701789,703366 /DEF=GMP synthase, an enzyme that catalyzes the second step in the biosynthesis of GMP from inosine 5'-phosphate (IMP); transcription is not subject to regulation by guanine but is negatively regulated by nutrient starvation /NOTE=Gua1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: GMP synthase (glutamine-hydrolyzing) activity [goid GO:0003922] [evidence IMP,ISS] [pmid 8112582]; go_process: GMP metabolism [goid GO:0046037] [evidence TAS] [pmid 11035032] --- --- --- --- scop // a.4.5.Transcription factor MotA, activation domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Transcription factor MotA, activation domain // 2.90000009536743 --- S0004830 // GUA1 SGDID:S0004830, Chr XIII from 701789-703366, Verified ORF // sgd // 11 // --- /// GENSCAN00000018898 // cdna:Genscan chromosome:SGD1:XIII:701789:703366:1 // ensembl // 11 // --- /// GENEFINDER00000021819 // cdna:GeneFinder chromosome:SGD1:XIII:701789:703366:1 // ensembl // 11 // --- /// YMR217W // cdna:known chromosome:SGD1:XIII:701789:703366:1 gene:YMR217W // ensembl // 11 // --- --- No cerevisiae_gene 2.00384320682381 1.26689698138224 -1.40482078549336 1.16490611617855 -1.04256570953508 Max fold change below threshold 4 2.00384320682381 Max fold change at or above threshold -0.68057566549644 1.17778840021338 0.467641144356065 -0.964853879073007 2818.10803222656 368.696913777988 0.130831362588567 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1776108_at YNL046W.S1 Hypothetical protein 2.00341156021807 260.629493713379 276.089263916016 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 247.034606933594 230.571182250977 290.687805175781 305.143920898438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL046W /GEN=ALG11 /DB_XREF=GI:6324282 /SEG=NC_001146:+542302,542820 /DEF=Hypothetical ORF /NOTE=Ynl046wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004991 // span:100-122,149-171 // numtm:2 S0004991 // YNL046W SGDID:S0004991, Chr XIV from 542303-542821, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019998 // cdna:Genscan chromosome:SGD1:XIV:542303:542821:1 // ensembl // 11 // --- /// YNL046W // cdna:known chromosome:SGD1:XIV:542303:542821:1 gene:YNL046W // ensembl // 11 // --- --- No cerevisiae_gene 2.00341156021807 -1.07140278556015 1.27964305612348 1.17670883761611 1.23522742293538 Max fold change below threshold 4 2.00341156021807 Max fold change at or above threshold -0.604417777117505 -1.07104816387567 0.632864815761861 1.04260112523131 268.359378814697 35.2815100555154 0.131471127304544 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777721_at YMR020W.S1 Polyamine oxidase, converts spermine to spermidine, which is required for the essential hypusination modification of translation factor eIF-5A; also involved in pantothenic acid biosynthesis 2.00334611565096 1316.33575439453 786.721740722656 FMS1 6598 // polyamine catabolism // inferred from genetic interaction /// 6598 // polyamine catabolism // inferred from mutant phenotype /// 15940 // pantothenate biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 8131 // amine oxidase activity // inferred from genetic interaction /// 8131 // amine oxidase activity // inferred from sequence similarity /// 8131 // amine oxidase activity // inferred from direct assay 736.300048828125 1157.60766601563 1475.06384277344 837.143432617188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR020W /GEN=FMS1 /DB_XREF=GI:6323662 /SEG=NC_001145:+315376,316902 /DEF=Polyamine oxidase, converts spermine to spermidine, which is required for the essential hypusination modification of translation factor eIF-5A; also involved in pantothenic acid biosynthesis /NOTE=Fms1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: amine oxidase activity [goid GO:0008131] [evidence IGI,ISS] [pmid 11154694]; go_function: amine oxidase activity [goid GO:0008131] [evidence IDA] [pmid 12670477]; go_process: pantothenate biosynthesis [goid GO:0015940] [evidence IMP] [pmid 11154694]; go_process: polyamine catabolism [goid GO:0006598] [evidence IGI,IMP] [pmid 12586697] --- --- --- --- --- --- S0004622 // FMS1 SGDID:S0004622, Chr XIII from 315376-316902, Verified ORF // sgd // 11 // --- /// GENSCAN00000018733 // cdna:Genscan chromosome:SGD1:XIII:315376:316902:1 // ensembl // 11 // --- /// GENEFINDER00000021945 // cdna:GeneFinder chromosome:SGD1:XIII:315376:316902:1 // ensembl // 11 // --- /// YMR020W // cdna:known chromosome:SGD1:XIII:315376:316902:1 gene:YMR020W // ensembl // 11 // --- --- No cerevisiae_gene -1.11089153550145 1.57219555785449 1.4823521122324 2.00334611565096 1.13695963208146 Max fold change below threshold 4 2.00334611565096 Max fold change at or above threshold -0.94197508723996 0.316987948338171 1.2656192468228 -0.640632107921011 1051.52874755859 334.646534712618 0.318247632781881 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1771905_at SPBC3D6.12.S1 --- 2.00332192096589 --- --- --- --- 3.33859515190125 5.42359638214111 4.99625396728516 1.66652953624725 0.398925989866257 0.5 0.274170011281967 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3D6.12 /DEF=WD repeat protein --- --- --- --- --- --- SPBC3D6.12 // |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.71867323788626 1.62451454440426 -1.32264571780048 1.49651387483742 -2.00332192096589 Max fold change below threshold 3 2.00332192096589 Max fold change at or above threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770760_at YGR168C.S1 Hypothetical protein 2.00323296269242 111.23360824585 154.842155456543 --- --- --- --- 128.594421386719 122.74055480957 99.7266616821289 181.089889526367 0.000244141003349796 0.000244141003349796 0.00585938012227416 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR168C /GEN=CLC1 /DB_XREF=GI:6321607 /SEG=NC_001139:-833355,834485 /DEF=Hypothetical ORF /NOTE=Ygr168cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003400 // span:35-54,75-93,108-130,151-173,191-208 // numtm:5 S0003400 // YGR168C SGDID:S0003400, Chr VII from 834487-833357, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YGR168C // cdna:known chromosome:SGD1:VII:833357:834487:-1 gene:YGR168C // ensembl // 11 // --- --- No cerevisiae_gene 2.00323296269242 -1.04769301056387 -1.36880688616299 -1.28946882626638 1.40822508141143 Max fold change below threshold 4 2.00323296269242 Max fold change at or above threshold -0.129273599515581 -0.299580145407378 -0.969123360033694 1.39797710495665 133.037881851196 34.3725283517149 0.258366473318937 PPPPPP Called_P_>2EXP 1 0 PPPP 0 4 0 Yes Yes 3 < x
1775975_at YPL224C.S1 Putative metal transporter involved in mitochondrial iron accumulation; closely related to Mmt1p 2.00321879942481 1161.04870605469 1047.15191650391 MMT2 6879 // iron ion homeostasis // inferred from genetic interaction /// 6879 // iron ion homeostasis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity --- 1064.11767578125 1109.22814941406 1212.86926269531 1030.18615722656 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL224C /GEN=MMT2 /DB_XREF=GI:6325032 /SEG=NC_001148:-126738,128087 /DEF=Protein involved in mitochondrial iron accumulation /NOTE=Mmt2p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 9353309]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 9353309]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IGI,IMP] [pmid 9353309] --- --- --- --- --- --- S0006145 // MMT2 SGDID:S0006145, Chr XVI from 128087-126738, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017014 // cdna:Genscan chromosome:SGD1:XVI:126738:127970:-1 // ensembl // 11 // --- /// GENEFINDER00000020769 // cdna:GeneFinder chromosome:SGD1:XVI:126738:129137:-1 // ensembl // 11 // --- /// YPL224C // cdna:known chromosome:SGD1:XVI:126738:128087:-1 gene:YPL224C // ensembl // 11 // --- --- No cerevisiae_gene -2.00321879942481 1.04239237319284 -1.13061434733681 1.13978866275748 -1.0329372689748 Max fold change below threshold 4 2.00321879942481 Max fold change at or above threshold -0.503482275780922 0.0645724220469187 1.36967557318515 -0.930765719451142 1104.1003112793 79.4122006301655 0.0719248059428154 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1774475_at YOR154W.S1 Hypothetical protein 2.00293287798715 345.905197143555 656.135681152344 --- --- --- --- 627.194702148438 318.272277832031 373.538116455078 685.07666015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR154W /GEN=PDR5 /DB_XREF=GI:6324728 /SEG=NC_001147:+624729,626492 /DEF=Hypothetical ORF /NOTE=Yor154wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005680 // span:5-22,542-559 // numtm:2 S0005680 // YOR154W SGDID:S0005680, Chr XV from 624729-626492, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017578 // cdna:Genscan chromosome:SGD1:XV:624729:626492:1 // ensembl // 11 // --- /// GENEFINDER00000022909 // cdna:GeneFinder chromosome:SGD1:XV:624729:626492:1 // ensembl // 11 // --- /// YOR154W // cdna:known chromosome:SGD1:XV:624729:626492:1 gene:YOR154W // ensembl // 11 // --- --- No cerevisiae_gene -2.00293287798715 -1.97062309799863 1.37481361835072 -1.67906479826099 1.0922870646221 Max fold change below threshold 4 2.00293287798715 Max fold change at or above threshold 0.693009739118676 -1.0037407993219 -0.700194232093811 1.01092529229704 501.020439147949 182.067084888227 0.363392529849393 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769390_s_at YDR447C.S1 Ribosomal protein 51 (rp51) of the small (40s) subunit; nearly identical to Rps17Bp and has similarity to rat S17 ribosomal protein /// Ribosomal protein 51 (rp51) of the small (40s) subunit; nearly identical to Rps17Ap and has similarity to rat S17 ribosomal protein 2.00235225596753 2258.18664550781 4024.7587890625 RPS17A /// RPS17B 28 // ribosomal small subunit assembly and maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement /// 42729 // DASH complex // inferred from direct assay /// 42729 // DASH complex // inferred from physical interaction 3735 // structural constituent of ribosome // traceable author statement 4163.1328125 2437.25219726563 2079.12109375 3886.384765625 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR447C /GEN=RPS17B /DB_XREF=GI:6320655 /SEG=NC_001136:-1354817,1355541 /DEF=Ribosomal protein 51 (rp51) of the small (40s) subunit; nearly identical to Rps17Ap and has similarity to rat S17 ribosomal protein /NOTE=Rps17bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: ribosomal small subunit assembly and maintenance [goid GO:0000028] [evidence IMP] [pmid 3915776] --- --- --- --- --- --- S0002855 // RPS17B SGDID:S0002855, Chr IV from 1355543-1355541,1355226-1354819, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0004486 // RPS17A SGDID:S0004486, Chr XIII from 225889-225891,226290-226697, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023568 // cdna:GeneFinder chromosome:SGD1:IV:1354819:1355717:-1 // ensembl // 11 // --- /// YDR447C // cdna:known chromosome:SGD1:IV:1354819:1355543:-1 gene:YDR447C // ensembl // 11 // --- /// YML024W // cdna:known chromosome:SGD1:XIII:225889:226697:1 gene:YML024W // ensembl // 11 // --- --- No cerevisiae_gene -1.05867792284664 -1.708125575667 -1.54408371860288 -2.00235225596753 -1.07120963660696 Max fold change below threshold 4 2.00235225596753 Max fold change at or above threshold 0.985651473385418 -0.679400121817943 -1.02490882035539 0.718657468787912 3141.47271728516 1036.53281388171 0.329951238531678 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1770200_at YOR272W.S1 Constituent of 66S pre-ribosomal particles, required for maturation of the large ribosomal subunit 2.00163635363533 485.232238769531 731.411773681641 YTM1 7001 // chromosome organization and biogenesis (sensu Eukaryota) // inferred from genetic interaction /// 42273 // ribosomal large subunit biogenesis // inferred from mutant phenotype /// 42273 // ribosomal large subunit biogenesis // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 697.948059082031 428.794555664063 541.669921875 764.87548828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR272W /GEN=YTM1 /DB_XREF=GI:6324846 /SEG=NC_001147:+832810,834192 /DEF=microtubule-associated protein /NOTE=Ytm1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11583614]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromosome organization and biogenesis (sensu Eukarya) [goid GO:0007001] [evidence IGI] [pmid 10454593]; go_process: ribosomal large subunit biogenesis [goid GO:0042273] [evidence IMP,IPI] [pmid 11583614] --- --- --- --- --- --- S0005798 // YTM1 SGDID:S0005798, Chr XV from 832810-834192, Verified ORF // sgd // 11 // --- /// GENSCAN00000017707 // cdna:Genscan chromosome:SGD1:XV:832810:834192:1 // ensembl // 11 // --- /// GENEFINDER00000022668 // cdna:GeneFinder chromosome:SGD1:XV:832810:834192:1 // ensembl // 11 // --- /// YOR272W // cdna:known chromosome:SGD1:XV:832810:834192:1 gene:YOR272W // ensembl // 11 // --- --- No cerevisiae_gene 2.00163635363533 -1.62769804295005 -1.40435197305259 -1.28851175022987 1.09589170473122 Max fold change below threshold 4 2.00163635363533 Max fold change at or above threshold 0.590060551565035 -1.18193385877507 -0.438809524702143 1.03068283191218 608.322006225586 151.892975422145 0.249691732121587 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779369_at YOR134W.S1 Rho GTPase activating protein (RhoGAP), stimulates the intrinsic GTPase activity of Rho1p, which plays a role in actin cytoskeleton organization and control of cell wall synthesis; structurally and functionally related to Sac7p 2.00133843588929 710.816589355469 1442.87219238281 BAG7 7264 // small GTPase mediated signal transduction // inferred from sequence similarity 5622 // intracellular // traceable author statement 4871 // signal transducer activity // inferred from sequence similarity /// 5100 // Rho GTPase activator activity // inferred from sequence similarity 1388.86682128906 727.664184570313 693.968994140625 1496.87756347656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR134W /GEN=BAG7 /DB_XREF=GI:6324708 /SEG=NC_001147:+578564,579793 /DEF=Structural homolog of SAC7 /NOTE=Bag7p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 9891811]; go_function: Rho GTPase activator activity [goid GO:0005100] [evidence ISS] [pmid 9891811]; go_function: signal transducer activity [goid GO:0004871] [evidence ISS] [pmid 9891811]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence ISS] [pmid 9891811] --- --- --- --- --- --- S0005660 // BAG7 SGDID:S0005660, Chr XV from 578564-579793, Verified ORF // sgd // 11 // --- /// GENSCAN00000017561 // cdna:Genscan chromosome:SGD1:XV:578573:579793:1 // ensembl // 11 // --- /// YOR134W // cdna:known chromosome:SGD1:XV:578564:579793:1 gene:YOR134W // ensembl // 11 // --- --- No cerevisiae_gene -1.54503911892986 -1.90866453336465 1.03958401760934 -2.00133843588929 1.07776897002065 Max fold change below threshold 4 2.00133843588929 Max fold change at or above threshold 0.733878455469399 -0.821273746679684 -0.900525018057857 0.987920309268141 1076.84439086914 425.169083646621 0.394828711791366 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1769621_at YKR035W-A.S1 Class E protein of the vacuolar protein-sorting (Vps) pathway, associates reversibly with the late endosome, has human ortholog that may be altered in breast tumors 2.00072969920487 640.940643310547 966.377288818359 DID2 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 45324 // late endosome to vacuole transport // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5770 // late endosome // inferred from direct assay --- 942.0107421875 602.959899902344 678.92138671875 990.743835449219 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR035W-A /GEN=DID2 /DB_XREF=GI:6322887 /SEG=NC_001143:+507581,508195 /DEF=Class E protein of the vacuolar protein-sorting (Vps) pathway, associates reversibly with the late endosome, has human ortholog that may be altered in breast tumors /NOTE=Did2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11029042]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 11029042] --- --- --- --- --- --- S0006435 // DID2 SGDID:S0006435, Chr XI from 507581-508195, Verified ORF // sgd // 11 // --- /// GENSCAN00000018446 // cdna:Genscan chromosome:SGD1:XI:507581:508195:1 // ensembl // 11 // --- /// GENEFINDER00000023165 // cdna:GeneFinder chromosome:SGD1:XI:507581:508195:1 // ensembl // 11 // --- /// YKR035W-A // cdna:known chromosome:SGD1:XI:507581:508195:1 gene:YKR035W-A // ensembl // 11 // --- YKR035C // ensembl // 11 // Negative Strand Matching Probes No cerevisiae_gene -2.00072969920487 -1.56231076451364 1.37823780684395 -1.38751077903183 1.05173305470865 Max fold change below threshold 4 2.00072969920487 Max fold change at or above threshold 0.722579216215172 -1.04820464172108 -0.651475426206556 0.977100851712468 803.658966064453 191.469354526588 0.238247020952458 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1779818_at YLR024C.S1 Cytoplasmic ubiquitin-protein ligase (E3) 2.00063665913121 131.671409606934 142.840347290039 UBR2 209 // protein polyubiquitination // traceable author statement /// 6513 // protein monoubiquitination // traceable author statement 5737 // cytoplasm // inferred from direct assay 4842 // ubiquitin-protein ligase activity // traceable author statement 128.846420288086 118.07958984375 145.263229370117 156.834274291992 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR024C /GEN=UBR2 /DB_XREF=GI:6323052 /SEG=NC_001144:-187664,193282 /DEF=Cytoplasmic ubiquitin-protein ligase (E3) /NOTE=Ubr2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 8982460]; go_process: protein monoubiquitination [goid GO:0006513] [evidence TAS] [pmid 8982460]; go_process: protein polyubiquitination [goid GO:0000209] [evidence TAS] [pmid 8982460] --- --- --- --- --- --- S0004014 // UBR2 SGDID:S0004014, Chr XII from 193282-187664, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017838 // cdna:Genscan chromosome:SGD1:XII:187664:193282:-1 // ensembl // 11 // --- /// GENEFINDER00000024832 // cdna:GeneFinder chromosome:SGD1:XII:187664:191461:-1 // ensembl // 11 // --- /// YLR024C // cdna:known chromosome:SGD1:XII:187664:193282:-1 gene:YLR024C // ensembl // 11 // --- --- No cerevisiae_gene 1.19486695943986 -1.09118282387823 2.00063665913121 1.12741377715675 1.21721871621523 Max fold change below threshold 4 2.00063665913121 Max fold change at or above threshold -0.48937426088079 -1.1159318333457 0.4659743070414 1.13933178718509 137.255878448486 17.1841039315488 0.125197580794313 PPPPPP Called_P_>2EXP 0 0 PPPP 0 4 0 Yes Yes 3 < x
1777268_at YJR019C.S1 Peroxisomal acyl-CoA thioesterase likely to be involved in fatty acid oxidation rather than fatty acid synthesis; conserved protein also found in human peroxisomes; TES1 mRNA levels increase during growth on fatty acids 1.99991778608301 1120.75830078125 1502.80462646484 TES1 19395 // fatty acid oxidation // inferred from mutant phenotype /// 19395 // fatty acid oxidation // inferred from expression pattern 5739 // mitochondrion // inferred from direct assay /// 5777 // peroxisome // inferred from direct assay 16291 // acyl-CoA thioesterase activity // inferred from direct assay 1481.75842285156 1146.16418457031 1095.35241699219 1523.85083007813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR019C /GEN=TES1 /DB_XREF=GI:6322480 /SEG=NC_001142:-467146,468195 /DEF=Thioesterase /NOTE=Tes1p; go_component: peroxisome [goid GO:0005777] [evidence IDA] [pmid 1448073]; go_function: acyl-CoA thioesterase activity [goid GO:0016291] [evidence IDA] [pmid 10092594]; go_process: fatty acid oxidation [goid GO:0019395] [evidence IEP,IMP] [pmid 1448073] --- --- --- --- --- --- S0003780 // TES1 SGDID:S0003780, Chr X from 468195-467146, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024149 // cdna:Genscan chromosome:SGD1:X:467146:468180:-1 // ensembl // 11 // --- /// GENEFINDER00000024472 // cdna:GeneFinder chromosome:SGD1:X:467146:468180:-1 // ensembl // 11 // --- /// YJR019C // cdna:known chromosome:SGD1:X:467146:468195:-1 gene:YJR019C // ensembl // 11 // --- --- No cerevisiae_gene -1.99991778608301 -1.29279770106153 1.06522121848835 -1.35276866135964 1.02840706459124 Max fold change below threshold 4 1.99991778608301 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771081_at YER170W.S1 Mitochondrial adenylate kinase, catalyzes the reversible synthesis of GTP and AMP from GDP and ADP; may serve as a back-up for synthesizing GTP or ADP depending on metabolic conditions; 3' sequence of ADK2 varies with strain background 1.99965875572812 133.368713378906 94.6334037780762 ADK2 9117 // nucleotide metabolism // inferred from direct assay 5743 // mitochondrial inner membrane // inferred from direct assay 4017 // adenylate kinase activity // inferred from direct assay 93.8571014404297 102.17756652832 164.559860229492 95.4097061157227 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER170W /GEN=ADK2 /DB_XREF=GI:6321018 /SEG=NC_001137:+525969,526646 /DEF=Adenylate kinase (mitochondrial GTP:AMP phosphotransferase) /NOTE=Adk2p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 8537371]; go_function: adenylate kinase activity [goid GO:0004017] [evidence IDA] [pmid 8537371]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000972 // ADK2 SGDID:S0000972, Chr V from 525969-526646, Verified ORF // sgd // 11 // --- /// GENSCAN00000016949 // cdna:Genscan chromosome:SGD1:V:525969:526646:1 // ensembl // 11 // --- /// GENEFINDER00000019730 // cdna:GeneFinder chromosome:SGD1:V:525969:526646:1 // ensembl // 11 // --- /// YER170W // cdna:known chromosome:SGD1:V:525969:526646:1 gene:YER170W // ensembl // 11 // --- --- No cerevisiae_gene -1.02885803216413 1.08865035207987 1.99965875572812 1.75330217643613 1.01654221845193 Max fold change below threshold 4 1.99965875572812 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-Scv2-r2-P1-cre-5_s_at AFFX-Scv2-r2-P1-cre-5 --- 1.99915956902282 --- --- --- --- 8969.025390625 10497.3173828125 4486.39794921875 4620.0205078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 581-1001 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. --- --- --- --- --- --- AFFX-Scv2-r2-P1-cre-5 // --- // affx // --- // --- --- AFFX_control No -1.58619698669822 1.17039666247182 -1.42335023948946 -1.99915956902282 -1.94133886969945 Max fold change below threshold 4 1.99915956902282 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776003_at YOR254C.S1 Essential subunit of Sec63 complex (Sec63p, Sec62p, Sec66p and Sec72p); with Sec61 complex, Kar2p/BiP and Lhs1p forms a channel competent for SRP-dependent and post-translational SRP-independent protein targeting and import into the ER 1.99903217472873 320.424224853516 618.245239257813 SEC63 6614 // SRP-dependent cotranslational protein-membrane targeting // inferred from mutant phenotype /// 6620 // posttranslational protein-membrane targeting // inferred from mutant phenotype /// 46967 // cytosol to ER transport // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // traceable author statement /// 31207 // Sec62/Sec63 complex // inferred from physical interaction 8565 // protein transporter activity // inferred from mutant phenotype 592.012634277344 296.149627685547 344.698822021484 644.477844238281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR254C /GEN=SEC63 /DB_XREF=GI:6324828 /SEG=NC_001147:-805031,807022 /DEF=Protein involved in protein import into ER /NOTE=Sec63p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence TAS] [pmid 10564637]; go_function: protein transporter activity [goid GO:0008565] [evidence TAS] [pmid 10564637]; go_process: SRP-dependent cotranslational membrane targeting, translocation [goid GO:0006616] [evidence TAS] [pmid 10564637] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 2.00000006274879E-22 S0005780 // span:13-35,88-107,222-244 // numtm:3 S0005780 // SEC63 SGDID:S0005780, Chr XV from 807022-805031, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017681 // cdna:Genscan chromosome:SGD1:XV:805031:806953:-1 // ensembl // 11 // --- /// GENEFINDER00000022913 // cdna:GeneFinder chromosome:SGD1:XV:805031:807022:-1 // ensembl // 11 // --- /// YOR254C // cdna:known chromosome:SGD1:XV:805031:807022:-1 gene:YOR254C // ensembl // 11 // --- --- No cerevisiae_gene 1.21734361492587 -1.99903217472873 -1.11507941298026 -1.7174779733957 1.0886217741366 Max fold change below threshold 4 1.99903217472873 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780131_at YFL041W-A.S1 Identified by fungal homology and RT-PCR 1.99902833304835 274.093307495117 527.318267822266 --- --- --- --- 494.48974609375 247.365051269531 300.821563720703 560.146789550781 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL041W-A /GEN=SEC53 /DB_XREF=GI:33438789 /SEG=NC_001138:+48734,48925 /DEF=Identified by fungal homology and RT-PCR /NOTE=Yfl041w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028547 // YFL041W-A SGDID:S0028547, Chr VI from 48734-48925, Uncharacterized ORF // sgd // 11 // --- /// YFL041W-A // cdna:known chromosome:SGD1:VI:48734:48925:1 gene:YFL041W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.83392657317211 -1.99902833304835 1.25156263114499 -1.64379753890535 1.13277736085671 Max fold change below threshold 4 1.99902833304835 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770947_at YPR006C.S1 2-methylisocitrate lyase of the mitochondrial matrix, functions in the methylcitrate cycle to catalyze the conversion of 2-methylisocitrate to succinate and pyruvate; ICL2 transcription is repressed by glucose and induced by ethanol 1.99868585466777 764.128082275391 510.640563964844 ICL2 6567 // threonine catabolism // inferred from expression pattern /// 19541 // propionate metabolism // inferred from expression pattern /// 19541 // propionate metabolism // inferred from direct assay 5759 // mitochondrial matrix // inferred from direct assay 46421 // methylisocitrate lyase activity // inferred from direct assay 511.299224853516 680.158569335938 848.097595214844 509.981903076172 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR006C /GEN=ICL2 /DB_XREF=GI:6325263 /SEG=NC_001148:-567264,568991 /DEF=2-methylisocitrate lyase of the mitochondrial matrix, functions in the methylcitrate cycle to catalyze the conversion of 2-methylisocitrate to succinate and pyruvate; ICL2 transcription is repressed by glucose and induced by ethanol /NOTE=Icl2p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 11092862]; go_function: methylisocitrate lyase activity [goid GO:0046421] [evidence IDA] [pmid 11092862]; go_process: propionate metabolism [goid GO:0019541] [evidence IDA] [pmid 11092862]; go_process: propionate metabolism [goid GO:0019541] [evidence IEP] [pmid 11179416]; go_process: threonine catabolism [goid GO:0006567] [evidence IEP] [pmid 11092862] --- --- --- --- --- --- S0006210 // ICL2 SGDID:S0006210, Chr XVI from 568993-567266, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017190 // cdna:Genscan chromosome:SGD1:XVI:567266:568984:-1 // ensembl // 11 // --- /// GENEFINDER00000020999 // cdna:GeneFinder chromosome:SGD1:XVI:567266:568984:-1 // ensembl // 11 // --- /// YPR006C // cdna:known chromosome:SGD1:XVI:567266:568993:-1 gene:YPR006C // ensembl // 11 // --- --- No cerevisiae_gene -1.99868585466777 1.33025542827842 1.5203953288756 1.65871089567527 -1.00258307553542 Max fold change below threshold 4 1.99868585466777 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772967_at YDR356W.S1 Inner plaque spindle pole body (SPB) component, ortholog of human kendrin; involved in connecting nuclear microtubules to SPB; interacts with Tub4p-complex and calmodulin; phosphorylated by Mps1p in cell cycle-dependent manner 1.99834916795162 140.128562927246 191.919502258301 SPC110 7020 // microtubule nucleation // inferred from physical interaction 5822 // inner plaque of spindle pole body // inferred from direct assay /// 5823 // central plaque of spindle pole body // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from physical interaction 179.648178100586 132.820236206055 147.436889648438 204.190826416016 0.00122069998178631 0.000732421991415322 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR356W /GEN=SPC110 /DB_XREF=GI:6320562 /SEG=NC_001136:+1186096,1188930 /DEF=may be involved in connecting nuclear microtubules to the spindle pole body /NOTE=Spc110p; go_component: central plaque of spindle pole body [goid GO:0005823] [evidence IDA] [pmid 9215630]; go_component: inner plaque of spindle pole body [goid GO:0005822] [evidence IDA] [pmid 9215630]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9215630]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752] --- --- --- --- scop // a.2.7.Seryl-tRNA synthetase (SerRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) // 3.0 --- S0002764 // SPC110 SGDID:S0002764, Chr IV from 1186098-1188932, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023431 // cdna:GeneFinder chromosome:SGD1:IV:1186098:1188932:1 // ensembl // 10 // --- /// GENSCAN00000025381 // cdna:Genscan chromosome:SGD1:IV:1187571:1188932:1 // ensembl // 10 // --- /// YDR356W // cdna:known chromosome:SGD1:IV:1186098:1188932:1 gene:YDR356W // ensembl // 10 // --- --- No cerevisiae_gene -1.99834916795162 -1.35256631995356 -1.01056362841538 -1.21847509486232 1.13661506938127 Max fold change below threshold 4 1.99834916795162 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776630_at YGR154C.S1 Omega-class glutathione transferase 1.99822397694095 150.95255279541 318.440383911133 --- --- 5777 // peroxisome // inferred from direct assay --- 300.231170654297 151.656097412109 150.249008178711 336.649597167969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR154C /GEN=RSR1 /DB_XREF=GI:6321593 /SEG=NC_001139:-796801,797871 /DEF=Hypothetical ORF /NOTE=Ygr154cp; go_component: peroxisome [goid GO:0005777] [evidence IDA] [pmid 10077615]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003386 // YGR154C SGDID:S0003386, Chr VII from 797873-796803, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019458 // cdna:Genscan chromosome:SGD1:VII:796803:797873:-1 // ensembl // 11 // --- /// YGR154C // cdna:known chromosome:SGD1:VII:796803:797873:-1 gene:YGR154C // ensembl // 11 // --- --- No cerevisiae_gene -1.91556201433599 -1.97968413916422 1.76121651051156 -1.99822397694095 1.1213012840549 Max fold change below threshold 4 1.99822397694095 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778931_at YJR096W.S1 Protein with similarity to aldo-keto reductases 1.99785373402715 2805.35656738281 3736.67797851563 --- 19568 // arabinose catabolism // inferred from direct assay /// 19568 // arabinose catabolism // inferred from mutant phenotype /// 42843 // D-xylose catabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4032 // aldehyde reductase activity // inferred from direct assay /// 4032 // aldehyde reductase activity // inferred from genetic interaction /// 4033 // aldo-keto reductase activity // inferred from sequence similarity 4014.74926757813 2958.20703125 2652.50610351563 3458.60668945313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR096W /GEN=SFC1 /DB_XREF=GI:6322556 /SEG=NC_001142:+611112,611960 /DEF=Protein with similarity to aldo-keto reductases /NOTE=Yjr096wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: aldehyde reductase activity [goid GO:0004032] [evidence IDA,IGI] [pmid 12271459]; go_function: aldo-keto reductase activity [goid GO:0004033] [evidence ISS] [pmid 11306085]; go_process: D-xylose metabolism [goid GO:0042732] [evidence IDA] [pmid 12271459]; go_process: arabinose metabolism [goid GO:0019566] [evidence IDA,IMP] [pmid 12271459] --- --- --- --- --- --- S0003857 // YJR096W SGDID:S0003857, Chr X from 611112-611960, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024208 // cdna:Genscan chromosome:SGD1:X:611112:611960:1 // ensembl // 11 // --- /// GENEFINDER00000024522 // cdna:GeneFinder chromosome:SGD1:X:611112:611960:1 // ensembl // 11 // --- /// YJR096W // cdna:known chromosome:SGD1:X:611112:611960:1 gene:YJR096W // ensembl // 11 // --- --- No cerevisiae_gene -1.99785373402715 -1.35715628594179 -1.07378992549937 -1.51356834288034 -1.16079960170693 Max fold change below threshold 4 1.99785373402715 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770400_at YLR248W.S1 Protein kinase involved in the response to oxidative and osmotic stress; identified as suppressor of S. pombe cell cycle checkpoint mutations 1.99770456332274 3940.71862792969 3142.3125 RCK2 6468 // protein amino acid phosphorylation // inferred from sequence similarity /// 6468 // protein amino acid phosphorylation // inferred from direct assay /// 7231 // osmosensory signaling pathway // inferred from genetic interaction /// 7231 // osmosensory signaling pathway // inferred from physical interaction /// 7231 // osmosensory signaling pathway // inferred from mutant phenotype /// 40020 // regulation of meiosis // inferred from genetic interaction /// 40020 // regulation of meiosis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4674 // protein serine/threonine kinase activity // inferred from sequence similarity /// 4674 // protein serine/threonine kinase activity // inferred from direct assay 3266.15185546875 4046.134765625 3835.30249023438 3018.47314453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR248W /GEN=RCK2 /DB_XREF=GI:6323277 /SEG=NC_001144:+634254,636086 /DEF=Serine/threonine protein kinase /NOTE=Rck2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence ISS] [pmid 10778743]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence ISS] [pmid 10778743]; go_process: regulation of meiosis [goid GO:0040020] [evidence IGI,IMP] [pmid 10778743] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 7.0E-50 /// hanks // 2.3.2 // CaMK Group; CaMK Other; PfCPK // 1.0E-69 --- --- S0004238 // RCK2 SGDID:S0004238, Chr XII from 634254-636086, Verified ORF // sgd // 11 // --- /// GENSCAN00000018012 // cdna:Genscan chromosome:SGD1:XII:634254:636086:1 // ensembl // 11 // --- /// GENEFINDER00000024815 // cdna:GeneFinder chromosome:SGD1:XII:634254:636086:1 // ensembl // 11 // --- /// YLR248W // cdna:known chromosome:SGD1:XII:634254:636086:1 gene:YLR248W // ensembl // 11 // --- --- No cerevisiae_gene -1.99770456332274 1.23880791361561 1.01500856844418 1.1742572482699 -1.08205430331101 Max fold change below threshold 4 1.99770456332274 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770527_at YFR048W.S1 Cytosolic protein required for sporulation 1.99768245889188 543.355224609375 1036.50946044922 RMD8 --- 5737 // cytoplasm // inferred from direct assay --- 988.882080078125 591.69580078125 495.0146484375 1084.13684082031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR048W /GEN=RMD8 /DB_XREF=GI:22532998 /SEG=NC_001138:+246133,248121 /DEF=Cytosolic protein required for sporulation /NOTE=Rmd8p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001944 // span:632-654 // numtm:1 S0001944 // RMD8 SGDID:S0001944, Chr VI from 246133-248121, Verified ORF // sgd // 11 // --- /// GENSCAN00000023284 // cdna:Genscan chromosome:SGD1:VI:246133:248121:1 // ensembl // 11 // --- /// GENEFINDER00000018591 // cdna:GeneFinder chromosome:SGD1:VI:246169:248121:1 // ensembl // 11 // --- /// YFR048W // cdna:known chromosome:SGD1:VI:246133:248121:1 gene:YFR048W // ensembl // 11 // --- --- No cerevisiae_gene -1.20181967427866 -1.67126770001147 -1.16924049513864 -1.99768245889188 1.0963257021855 Max fold change below threshold 4 1.99768245889188 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776615_at YJL156C.S1 Component of the SPS plasma membrane amino acid sensor system (Ssy1p-Ptr3p-Ssy5p), which senses external amino acid concentration and transmits intracellular signals that result in regulation of expression of amino acid permease genes 1.9974794524273 79.7284736633301 148.470443725586 SSY5 7606 // sensory perception of chemical stimulus // inferred from genetic interaction /// 7606 // sensory perception of chemical stimulus // inferred from mutant phenotype 19897 // extrinsic to plasma membrane // inferred from direct assay 16597 // amino acid binding // inferred from genetic interaction /// 16597 // amino acid binding // inferred from mutant phenotype 134.502212524414 67.3359680175781 92.120979309082 162.438674926758 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL156C /GEN=SSY5 /DB_XREF=GI:6322305 /SEG=NC_001142:-126807,128870 /DEF=Component of the SPS plasma membrane amino acid sensor system (Ssy1p-Ptr3p-Ssy5p), which senses external amino acid concentration and transmits intracellular signals that result in regulation of expression of amino acid permease genes /NOTE=Ssy5p; go_component: extrinsic to plasma membrane [goid GO:0019897] [evidence IDA] [pmid 11154269]; go_function: amino acid binding [goid GO:0016597] [evidence IGI,IMP] [pmid 11154269]; go_process: sensory perception of chemical stimulus [goid GO:0007606] [evidence IGI,IMP] [pmid 11154269] --- --- --- --- --- --- S0003692 // SSY5 SGDID:S0003692, Chr X from 128870-126807, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024020 // cdna:Genscan chromosome:SGD1:X:126807:128870:-1 // ensembl // 11 // --- /// GENEFINDER00000024308 // cdna:GeneFinder chromosome:SGD1:X:126807:128870:-1 // ensembl // 11 // --- /// YJL156C // cdna:known chromosome:SGD1:X:126807:128870:-1 gene:YJL156C // ensembl // 11 // --- --- No cerevisiae_gene -1.03935616243399 -1.9974794524273 1.12695693586774 -1.46006060219069 1.20770262345887 Max fold change below threshold 4 1.9974794524273 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775462_at YJR130C.S1 Cystathionine gamma-synthase, converts cysteine into cystathionine 1.99734964063007 1847.67272949219 1034.46618652344 STR2 6790 // sulfur metabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3962 // cystathionine gamma-synthase activity // inferred from mutant phenotype 989.2802734375 1719.40686035156 1975.93859863281 1079.65209960938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR130C /GEN=STR2 /DB_XREF=GI:6322590 /SEG=NC_001142:-665133,667052 /DEF=Sulfur TRansfer /NOTE=Str2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: cystathionine gamma-synthase activity [goid GO:0003962] [evidence IMP] [pmid 10821189]; go_process: sulfur metabolism [goid GO:0006790] [evidence IMP] [pmid 10821189] --- --- --- --- --- --- S0003891 // STR2 SGDID:S0003891, Chr X from 667052-665133, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024235 // cdna:Genscan chromosome:SGD1:X:665133:667052:-1 // ensembl // 11 // --- /// GENEFINDER00000024418 // cdna:GeneFinder chromosome:SGD1:X:665133:666602:-1 // ensembl // 11 // --- /// YJR130C // cdna:known chromosome:SGD1:X:665133:667052:-1 gene:YJR130C // ensembl // 11 // --- --- No cerevisiae_gene 1.38223601537181 1.73803815411891 1.07459776332818 1.99734964063007 1.09135108482236 Max fold change below threshold 4 1.99734964063007 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772048_at YLR337C.S1 Proline-rich, actin-associated protein involved in cytoskeletal organization and cytokinesis; related to mammalian Wiskott-Aldrich syndrome protein (WASP)-interacting protein (WIP) 1.99710916650197 627.821899414063 972.7880859375 VRP1 6897 // endocytosis // inferred from mutant phenotype /// 6970 // response to osmotic stress // inferred from mutant phenotype /// 7015 // actin filament organization // inferred from physical interaction /// 7121 // bipolar bud site selection // inferred from mutant phenotype 30479 // actin cortical patch // inferred from direct assay 3779 // actin binding // inferred from direct assay 943.329895019531 537.157287597656 718.486511230469 1002.24627685547 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR337C /GEN=VRP1 /DB_XREF=GI:6323370 /SEG=NC_001144:-802653,805106 /DEF=Involved in cytoskeletal organization and cellular growth /NOTE=Vrp1p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10652251]; go_function: actin binding [goid GO:0003779] [evidence IDA] [pmid 9412475]; go_process: actin filament organization [goid GO:0007015] [evidence IPI] [pmid 9412475]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 10652251]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251]; go_process: response to osmotic stress [goid GO:0006970] [evidence IMP] [pmid 10652251] --- --- --- --- --- --- S0004329 // VRP1 SGDID:S0004329, Chr XII from 805106-802653, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018077 // cdna:Genscan chromosome:SGD1:XII:802653:805106:-1 // ensembl // 11 // --- /// GENEFINDER00000024767 // cdna:GeneFinder chromosome:SGD1:XII:802653:805106:-1 // ensembl // 11 // --- /// YLR337C // cdna:known chromosome:SGD1:XII:802653:805106:-1 gene:YLR337C // ensembl // 11 // --- --- No cerevisiae_gene -1.99710916650197 -1.75615209325077 -1.16779765339081 -1.31294029919086 1.0624557560902 Max fold change below threshold 4 1.99710916650197 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772408_at YPR073C.S1 Protein phosphotyrosine phosphatase of unknown cellular role; activated by adenine 1.99709373585932 1101.21185302734 632.451934814453 LTP1 6470 // protein amino acid dephosphorylation // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4725 // protein tyrosine phosphatase activity // inferred from direct assay /// 4725 // protein tyrosine phosphatase activity // inferred from mutant phenotype 583.372497558594 1165.04956054688 1037.37414550781 681.531372070313 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR073C /GEN=LTP1 /DB_XREF=GI:6325330 /SEG=NC_001148:-691928,692413 /DEF=Homologous to mammalian phosphotyrosine phosphatase /NOTE=Ltp1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: protein tyrosine phosphatase activity [goid GO:0004725] [evidence IDA,IMP] [pmid 7629177]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence IDA] [pmid 7629177] --- --- --- --- --- --- S0006277 // LTP1 SGDID:S0006277, Chr XVI from 692415-691930, reverse complement, Verified ORF // sgd // 11 // --- /// U11057 // Saccharomyces cerevisiae Y133 low molecular weight protein tyrosine phosphatase (LTP1) mRNA, complete cds. // gb // 11 // --- /// YPR073C // cdna:known chromosome:SGD1:XVI:691930:692415:-1 gene:YPR073C // ensembl // 11 // --- --- No cerevisiae_gene 1.70350288633314 1.99709373585932 1.61062651869251 1.77823628959063 1.16826105948174 Max fold change below threshold 4 1.99709373585932 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774348_at YGR172C.S1 Integral membrane protein required for the biogenesis of ER-derived COPII transport vesicles; interacts with Yif1p and Yos1p; localizes to the Golgi, the ER, and COPII vesicles 1.99693494028771 1224.16235351563 2141.72430419922 YIP1 6888 // ER to Golgi transport // inferred from mutant phenotype /// 16192 // vesicle-mediated transport // inferred from mutant phenotype /// 48280 // vesicle fusion with Golgi apparatus // inferred from mutant phenotype 5789 // endoplasmic reticulum membrane // inferred from direct assay /// 30138 // COPII-coated vesicle // inferred from direct assay /// 30138 // COPII-coated vesicle // inferred from physical interaction /// 30173 // integral to Golgi membrane // inferred from direct assay --- 2239.90380859375 1121.6708984375 1326.65380859375 2043.54479980469 0.000244141003349796 0.00195312988944352 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR172C /GEN=YIP1 /DB_XREF=GI:6321611 /SEG=NC_001139:-842848,843594 /DEF=Golgi integral membrane protein; binds to the transport GTPases Ypt1p and Ypt31p /NOTE=Yip1p; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 9724632]; go_component: membrane [goid GO:0016020] [evidence IDA] [pmid 9724632]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IMP] [pmid 9724632] --- --- --- --- --- S0003404 // span:111-128,133-150,167-189,199-221,228-247 // numtm:5 S0003404 // YIP1 SGDID:S0003404, Chr VII from 843596-842850, reverse complement, Verified ORF // sgd // 11 // --- /// YGR172C // cdna:known chromosome:SGD1:VII:842850:843596:-1 gene:YGR172C // ensembl // 11 // --- --- No cerevisiae_gene -1.02600827235012 -1.99693494028771 -1.21340200329489 -1.68838606883287 -1.09608745000737 Max fold change below threshold 4 1.99693494028771 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772144_at SPBC36.01c.S1 --- 1.99692711923094 --- --- --- --- 13.9480953216553 13.9819774627686 11.8743724822998 16.365385055542 0.171387001872063 0.274170011281967 0.149657994508743 0.030273400247097 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC36.01c /DEF=unknown specificity --- --- --- --- --- --- SPBC36.01c // |||membrane transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.99692711923094 1.0024291589878 -1.64951542452389 -1.17463852026257 1.17330608073303 Max fold change below threshold 4 1.99692711923094 Max fold change below threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1775317_at YDL202W.S1 Mitochondrial ribosomal protein of the large subunit 1.99554137169817 565.156478881836 1057.01815795898 MRPL11 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 998.068908691406 500.149444580078 630.163513183594 1115.96740722656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL202W /GEN=MRPL11 /DB_XREF=GI:6319999 /SEG=NC_001136:+98476,99225 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl11p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0002361 // MRPL11 SGDID:S0002361, Chr IV from 98476-99225, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023656 // cdna:GeneFinder chromosome:SGD1:IV:98476:99225:1 // ensembl // 11 // --- /// YDL202W // cdna:known chromosome:SGD1:IV:98476:99225:1 gene:YDL202W // ensembl // 11 // --- --- No cerevisiae_gene 1.4188675262245 -1.99554137169817 1.09737315608431 -1.58382528948582 1.11812661180853 Max fold change below threshold 4 1.99554137169817 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774476_at YOR253W.S1 Subunit of the N-terminal acetyltransferase NatA (Nat1p, Ard1p, Nat5p); N-terminally acetylates many proteins, which influences multiple processes such as the cell cycle, heat-shock resistance, mating, sporulation, and telomeric silencing 1.99522341149731 263.176544189453 354.475341796875 NAT5 6473 // protein amino acid acetylation // inferred from sequence similarity 5737 // cytoplasm // inferred from curator /// 5830 // cytosolic ribosome (sensu Eukaryota) // inferred from direct assay 4596 // peptide alpha-N-acetyltransferase activity // inferred from sequence similarity 353.754852294922 177.300872802734 349.052215576172 355.195831298828 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR253W /GEN=NAT5 /DB_XREF=GI:6324827 /SEG=NC_001147:+804376,804906 /DEF=Nat5p /NOTE=go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 12507466]; go_function: peptide alpha-N-acetyltransferase activity [goid GO:0004596] [evidence ISS] [pmid 12507466]; go_process: protein amino acid acetylation [goid GO:0006473] [evidence ISS] [pmid 12507466] --- --- --- --- --- --- S0005779 // NAT5 SGDID:S0005779, Chr XV from 804376-804906, Verified ORF // sgd // 11 // --- /// GENSCAN00000017679 // cdna:Genscan chromosome:SGD1:XV:804376:804906:1 // ensembl // 11 // --- /// YOR253W // cdna:known chromosome:SGD1:XV:804376:804906:1 gene:YOR253W // ensembl // 11 // --- --- No cerevisiae_gene 1.57295990739692 -1.99522341149731 -1.01339151848058 -1.01347258807966 1.00407338300679 Max fold change below threshold 4 1.99522341149731 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779054_at SPBC1271.02.S1 --- 1.99462756429179 --- --- --- --- 3.162917137146 3.38692021369934 4.8392162322998 4.26699447631836 0.432372987270355 0.466064006090164 0.219482004642487 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1271.02 /GEN=stt3 /DEF=oligosaccharyltransferase subunit --- --- --- --- --- --- SPBC1271.02 // |stt3||oligosaccharyltransferase subunit Stt3|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.53238250849751 1.07082167089444 1.99462756429179 1.52998514424137 1.34906932154682 Max fold change below threshold 4 1.99462756429179 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778701_at SPCC338.10c.S1 --- 1.99365819654669 --- --- --- --- 11.3169250488281 16.2667274475098 22.5620803833008 12.4733219146729 0.00805663969367743 0.111571997404099 0.0805663987994194 0.0461426004767418 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC338.10c /GEN=cox5 /DEF=cytochrome c oxidase (subunit V) (predicted) --- --- --- --- --- --- SPCC338.10c // |cox5||cytochrome c oxidase subunit V|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -1.5864124188932 1.43738050551057 1.04040523294852 1.99365819654669 1.10218295701839 Max fold change below threshold 4 1.99365819654669 Max fold change below threshold PAAPAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1770102_at YHR118C.S1 Subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing; may be phosphorylated by Cdc28p 1.99287151696777 107.893161773682 125.110126495361 ORC6 6267 // pre-replicative complex formation and maintenance // traceable author statement /// 6270 // DNA replication initiation // traceable author statement /// 30466 // chromatin silencing at silent mating-type cassette // traceable author statement 5656 // pre-replicative complex // traceable author statement /// 5664 // nuclear origin of replication recognition complex // traceable author statement 3688 // DNA replication origin binding // traceable author statement 111.033988952637 95.8464584350586 119.939865112305 139.186264038086 0.000244141003349796 0.000244140625 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR118C /GEN=ORC6 /DB_XREF=GI:6321910 /SEG=NC_001140:-344323,345630 /DEF=Subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing; may be phosphorylated by Cdc28p /NOTE=Orc6p; go_component: nuclear origin of replication recognition complex [goid GO:0005664] [evidence TAS] [pmid 9442876]; go_function: DNA replication origin binding [goid GO:0003688] [evidence TAS] [pmid 9442876]; go_process: DNA replication initiation [goid GO:0006270] [evidence TAS] [pmid 9442876]; go_process: chromatin silencing at silent mating-type cassette (sensu Fungi) [goid GO:0030466] [evidence TAS] [pmid 9442876]; go_process: pre-replicative complex formation and maintenance [goid GO:0006267] [evidence TAS] [pmid 9442876] --- --- --- --- --- --- S0001160 // ORC6 SGDID:S0001160, Chr VIII from 345630-344323, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016655 // cdna:Genscan chromosome:SGD1:VIII:344323:345630:-1 // ensembl // 11 // --- /// GENEFINDER00000020239 // cdna:GeneFinder chromosome:SGD1:VIII:344323:345132:-1 // ensembl // 11 // --- /// YHR118C // cdna:known chromosome:SGD1:VIII:344323:345630:-1 gene:YHR118C // ensembl // 11 // --- --- No cerevisiae_gene -1.00725411085545 -1.15845687744288 1.99287151696777 1.08020855815121 1.253546462223 Max fold change below threshold 4 1.99287151696777 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774369_at YGL187C.S1 Subunit IV of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; N-terminal 25 residues of precursor are cleaved during mitochondrial import 1.9918478724337 5497.99829101563 3005.50524902344 COX4 6123 // mitochondrial electron transport, cytochrome c to oxygen // inferred from direct assay /// 9060 // aerobic respiration // inferred from physical interaction 5751 // respiratory chain complex IV (sensu Eukaryota) // inferred from physical interaction 4129 // cytochrome-c oxidase activity // inferred from direct assay 3249.36743164063 6472.24560546875 4523.7509765625 2761.64306640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL187C /GEN=COX4 /DB_XREF=GI:6321251 /SEG=NC_001139:-149708,150175 /DEF=Subunit IV of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; N-terminal 25 residues of precursor are cleaved during mitochondrial import /NOTE=Cox4p; go_component: respiratory chain complex IV (sensu Eukarya) [goid GO:0005751] [evidence IPI] [pmid 1331058]; go_function: cytochrome-c oxidase activity [goid GO:0004129] [evidence IDA] [pmid 1331058]; go_process: aerobic respiration [goid GO:0009060] [evidence IPI] [pmid 163235] --- --- --- --- --- --- S0003155 // COX4 SGDID:S0003155, Chr VII from 150177-149710, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019209 // cdna:Genscan chromosome:SGD1:VII:149710:150177:-1 // ensembl // 11 // --- /// GENEFINDER00000021511 // cdna:GeneFinder chromosome:SGD1:VII:149710:150177:-1 // ensembl // 11 // --- /// YGL187C // cdna:known chromosome:SGD1:VII:149710:150177:-1 gene:YGL187C // ensembl // 11 // --- --- No cerevisiae_gene -1.22157690645362 1.9918478724337 -1.0245722740433 1.39219434912549 -1.17660659017353 Max fold change below threshold 4 1.9918478724337 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779459_at YLR272C.S1 Non-SMC subunit of the condensin complex (Smc2p-Smc4p-Ycs4p-Brn1p-Ycg1p); required for establishment and maintenance of chromosome condensation, chromosome segregation, chromatin binding of condensin and silencing at the mating type locus 1.99135685286674 155.068954467773 290.484237670898 YCS4 70 // mitotic sister chromatid segregation // inferred from mutant phenotype /// 7076 // mitotic chromosome condensation // inferred from physical interaction /// 7076 // mitotic chromosome condensation // traceable author statement /// 7076 // mitotic chromosome condensation // inferred from mutant phenotype /// 10032 // meiotic chromosome condensation // inferred from mutant phenotype /// 30466 // chromatin silencing at silent mating-type cassette // inferred from mutant phenotype 799 // nuclear condensin complex // inferred from physical interaction /// 799 // nuclear condensin complex // traceable author statement /// 5730 // nucleolus // inferred from direct assay --- 273.195892333984 137.190826416016 172.947082519531 307.772583007813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR272C /GEN=YCS4 /DB_XREF=GI:6323302 /SEG=NC_001144:-683674,687204 /DEF=loss of cohesion /NOTE=Ycs4p; go_component: nuclear condensin complex [goid GO:0000799] [evidence IPI] [pmid 10811823]; go_component: nuclear condensin complex [goid GO:0000799] [evidence TAS] [pmid 9887095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitotic chromosome condensation [goid GO:0007076] [evidence IPI] [pmid 10811823]; go_process: mitotic chromosome condensation [goid GO:0007076] [evidence TAS] [pmid 9887095] --- --- --- --- --- --- S0004262 // YCS4 SGDID:S0004262, Chr XII from 687204-683674, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018032 // cdna:Genscan chromosome:SGD1:XII:683674:687204:-1 // ensembl // 11 // --- /// GENEFINDER00000024790 // cdna:GeneFinder chromosome:SGD1:XII:683674:687204:-1 // ensembl // 11 // --- /// YLR272C // cdna:known chromosome:SGD1:XII:683674:687204:-1 gene:YLR272C // ensembl // 11 // --- --- No cerevisiae_gene 1.28333416926541 -1.99135685286674 1.28165444846747 -1.57965019330772 1.12656372824068 Max fold change below threshold 4 1.99135685286674 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770234_at SPAC23H4.12.S1 --- 1.99111628193149 --- --- --- --- 2.8084876537323 4.06432247161865 5.58236312866211 3.19829154014587 0.888427972793579 0.919434010982513 0.533936023712158 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H4.12 /GEN=alp13 /DEF=chromodomain protein --- --- --- --- --- --- SPAC23H4.12 // |alp13||chromodomain protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.23909884936319 1.44715696585578 -1.99111628193149 1.98767586577905 1.13879494392491 Max fold change below threshold 4 1.99111628193149 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777920_at SPAP8A3.03.S1 --- 1.99080606973844 --- --- --- --- 19.8949794769287 17.3577404022217 12.975567817688 10.241081237793 0.014160200022161 0.0676269978284836 0.0461426004767418 0.00805663969367743 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP8A3.03 /DEF=ZIP zinc transporter domain --- --- --- --- --- --- SPAP8A3.03 // |||ZIP zinc transporter domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.99080606973844 -1.14617335067313 1.04364788975312 -1.53326465218796 -1.94266396437807 Max fold change below threshold 4 1.99080606973844 Max fold change below threshold PAAPPP No 4 0 PAPP 1 3 0 No No 2 < x = 3
1779010_at YLR079W.S1 Inhibitor of Cdc28-Clb kinase complexes that controls the G1/S phase transition, preventing premature S phase entry and ensuring genomic integrity; multisite phosphorylation by Cdc28-Cln kinase targets Sic1p for SCF(CDC4)-dependent turnover 1.99043482358339 474.551116943359 718.836151123047 SIC1 79 // regulation of cyclin dependent protein kinase activity // inferred from mutant phenotype /// 79 // regulation of cyclin dependent protein kinase activity // inferred from direct assay /// 79 // regulation of cyclin dependent protein kinase activity // inferred from physical interaction /// 79 // regulation of cyclin dependent protein kinase activity // inferred from expression pattern /// 82 // G1/S transition of mitotic cell cycle // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 5515 // protein binding // inferred from physical interaction /// 19210 // kinase inhibitor activity // inferred from direct assay 665.17236328125 334.184448242188 614.917785644531 772.499938964844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR079W /GEN=SIC1 /DB_XREF=GI:6323108 /SEG=NC_001144:+286821,287675 /DEF=P40 inhibitor of Cdc28p-Clb5 protein kinase complex /NOTE=Sic1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11792824]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11792824]; go_function: kinase inhibitor activity [goid GO:0019210] [evidence IDA] [pmid 7954792]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 8421781]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence TAS] [pmid 7954792]; go_process: regulation of cyclin dependent protein kinase activity [goid GO:0000079] [evidence IDA,IEP,IMP,IPI] [pmid 7954792] --- --- --- --- --- --- S0004069 // SIC1 SGDID:S0004069, Chr XII from 286821-287675, Verified ORF // sgd // 11 // --- /// GENSCAN00000017878 // cdna:Genscan chromosome:SGD1:XII:286821:287675:1 // ensembl // 11 // --- /// GENEFINDER00000024786 // cdna:GeneFinder chromosome:SGD1:XII:287013:287675:1 // ensembl // 11 // --- /// YLR079W // cdna:known chromosome:SGD1:XII:286821:287675:1 gene:YLR079W // ensembl // 11 // --- --- No cerevisiae_gene 1.1322173492391 -1.99043482358339 1.0233883920477 -1.08172568562811 1.16135302909182 Max fold change below threshold 4 1.99043482358339 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772433_x_at YLR388W.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps29Bp and has similarity to rat S29 and E. coli S14 ribosomal proteins /// Protein component of the small (40S) ribosomal subunit; nearly identical to Rps29Ap and has similarity to rat S29 and E. coli S14 ribosomal proteins 1.98980514479481 3126.26550292969 4665.4267578125 RPS29A /// RPS29B 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 5212.03662109375 3633.16064453125 2619.37036132813 4118.81689453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR388W /GEN=RPS29A /DB_XREF=GI:6323420 /SEG=NC_001144:+898651,898821 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps29Bp and has similarity to rat S29 and E. coli S14 ribosomal proteins /NOTE=Rps29ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004380 // RPS29A SGDID:S0004380, Chr XII from 898651-898821, Verified ORF // sgd // 11 // --- /// YLR388W // cdna:known chromosome:SGD1:XII:898651:898821:1 gene:YLR388W // ensembl // 11 // --- --- No cerevisiae_gene -1.05504019416869 -1.4345736759367 -1.5520431118765 -1.98980514479481 -1.26542081247021 Max fold change below threshold 4 1.98980514479481 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773695_at YER055C.S1 ATP phosphoribosyltransferase, a hexameric enzyme, catalyzes the first step in histidine biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts; transcription is regulated by general amino acid control 1.9896995148861 560.397415161133 936.281585693359 HIS1 105 // histidine biosynthesis // traceable author statement 5622 // intracellular // traceable author statement 3879 // ATP phosphoribosyltransferase activity // traceable author statement 937.496948242188 471.175140380859 649.619689941406 935.066223144531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER055C /GEN=HIS1 /DB_XREF=GI:6320896 /SEG=NC_001137:-264891,265784 /DEF=ATP phosphoribosyltransferase, a hexameric enzyme, catalyzes the first step in histidine biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts; transcription is regulated by general amino acid control /NOTE=His1p; go_component: cell [goid GO:0005623] [evidence TAS] [pmid 8852895]; go_function: ATP phosphoribosyltransferase activity [goid GO:0003879] [evidence TAS] [pmid 8852895]; go_process: histidine biosynthesis [goid GO:0000105] [evidence TAS] [pmid 8852895] --- --- --- --- --- --- S0000857 // HIS1 SGDID:S0000857, Chr V from 265784-264891, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016849 // cdna:Genscan chromosome:SGD1:V:264891:265784:-1 // ensembl // 11 // --- /// GENEFINDER00000019693 // cdna:GeneFinder chromosome:SGD1:V:264891:265784:-1 // ensembl // 11 // --- /// YER055C // cdna:known chromosome:SGD1:V:264891:265784:-1 gene:YER055C // ensembl // 11 // --- --- No cerevisiae_gene 1.70394552065599 -1.9896995148861 1.13457035992956 -1.4431473718519 -1.00259952187074 Max fold change below threshold 4 1.9896995148861 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769624_at YLR283W.S1 Hypothetical protein 1.98870729760679 345.750198364258 650.163269042969 --- --- 5739 // mitochondrion // inferred from direct assay --- 655.859802246094 361.708374023438 329.792022705078 644.466735839844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR283W /GEN=YSH1 /DB_XREF=GI:6323312 /SEG=NC_001144:+705188,706132 /DEF=Hypothetical ORF /NOTE=Ylr283wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004273 // YLR283W SGDID:S0004273, Chr XII from 705188-706132, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018039 // cdna:Genscan chromosome:SGD1:XII:705191:706132:1 // ensembl // 11 // --- /// YLR283W // cdna:known chromosome:SGD1:XII:705188:706132:1 gene:YLR283W // ensembl // 11 // --- --- No cerevisiae_gene 1.03160835865298 -1.81322813998107 -1.20197887455495 -1.98870729760679 -1.01767828465406 Max fold change below threshold 4 1.98870729760679 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775982_at YHR045W.S1 Hypothetical protein 1.9886186904177 318.161346435547 592.196929931641 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 555.704284667969 279.442352294922 356.880340576172 628.689575195313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR045W /GEN=DOG1 /DB_XREF=GI:6321835 /SEG=NC_001140:+195543,197225 /DEF=Hypothetical ORF /NOTE=Yhr045wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001087 // span:5-27 // numtm:1 S0001087 // YHR045W SGDID:S0001087, Chr VIII from 195543-197225, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016592 // cdna:Genscan chromosome:SGD1:VIII:195822:197225:1 // ensembl // 11 // --- /// GENEFINDER00000020207 // cdna:GeneFinder chromosome:SGD1:VIII:195900:197225:1 // ensembl // 11 // --- /// YHR045W // cdna:known chromosome:SGD1:VIII:195543:197225:1 gene:YHR045W // ensembl // 11 // --- --- No cerevisiae_gene -1.10233789744145 -1.9886186904177 1.22832947395394 -1.55711654996406 1.1313383620408 Max fold change below threshold 4 1.9886186904177 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771822_at YML025C.S1 Mitochondrial ribosomal protein of the large subunit, has similarity to E. coli L4 ribosomal protein and human mitoribosomal MRP-L4 protein; essential for viability, unlike most other mitoribosomal proteins 1.98854120724582 540.041366577148 848.077178955078 YML6 27 // ribosomal large subunit assembly and maintenance // inferred from sequence similarity /// 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 799.289489746094 401.947662353516 678.135070800781 896.864868164063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML025C /GEN=YML6 /DB_XREF=GI:6323616 /SEG=NC_001145:-224406,225365 /DEF=Mitochondrial ribosomal protein of the large subunit, has similarity to E. coli L4 ribosomal protein and human mitoribosomal MRP-L4 protein; essential for viability, unlike most other mitoribosomal proteins /NOTE=Yml6p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence ISS] [pmid 9445368] --- --- --- --- --- --- S0004487 // YML6 SGDID:S0004487, Chr XIII from 225365-225339,225239-224406, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000018696 // cdna:Genscan chromosome:SGD1:XIII:224406:224951:-1 // ensembl // 10 // --- /// GENEFINDER00000021995 // cdna:GeneFinder chromosome:SGD1:XIII:224406:224951:-1 // ensembl // 10 // --- /// YML025C // cdna:known chromosome:SGD1:XIII:224406:225365:-1 gene:YML025C // ensembl // 11 // --- --- No cerevisiae_gene 1.36107393353732 -1.98854120724582 1.06649727590857 -1.17865824105255 1.12207764479546 Max fold change below threshold 4 1.98854120724582 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770758_at YGL153W.S1 Peroxisomal membrane protein that is a central component of the peroxisomal protein import machinery, interacts with PTS1 (Pex5p) and PTS2 (Pex7p) peroxisomal matrix protein signal recognition factors and membrane receptor Pex13p 1.9885109229574 619.400299072266 668.799011230469 PEX14 6625 // protein-peroxisome targeting // inferred from mutant phenotype /// 6625 // protein-peroxisome targeting // traceable author statement /// 6625 // protein-peroxisome targeting // inferred from physical interaction /// 16558 // peroxisome matrix protein import // inferred from physical interaction 5778 // peroxisomal membrane // inferred from direct assay /// 5778 // peroxisomal membrane // traceable author statement 5515 // protein binding // traceable author statement 630.567749023438 555.439208984375 683.361389160156 707.0302734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL153W /GEN=PEX14 /DB_XREF=GI:6321285 /SEG=NC_001139:+216276,217301 /DEF=Peroxisomal peripheral membrane protein (peroxin) involved in import of peroxisomal matrix proteins /NOTE=Pex14p; go_component: peroxisomal membrane [goid GO:0005778] [evidence IDA,TAS] [pmid 10087260]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 10087260]; go_process: protein-peroxisome targeting [goid GO:0006625] [evidence IMP,IPI,TAS] [pmid 10087260] --- --- --- --- --- --- S0003121 // PEX14 SGDID:S0003121, Chr VII from 216278-217303, Verified ORF // sgd // 10 // --- /// GENSCAN00000019234 // cdna:Genscan chromosome:SGD1:VII:216278:217303:1 // ensembl // 10 // --- /// GENEFINDER00000021726 // cdna:GeneFinder chromosome:SGD1:VII:216278:217303:1 // ensembl // 10 // --- /// YGL153W // cdna:known chromosome:SGD1:VII:216278:217303:1 gene:YGL153W // ensembl // 10 // --- YGL152C // ensembl // 10 // Negative Strand Matching Probes No cerevisiae_gene -1.9885109229574 -1.1352596986742 1.4562454470536 1.08372397766692 1.12125980837504 Max fold change below threshold 4 1.9885109229574 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770981_at YIL121W.S1 Multidrug transporter required for resistance to quinidine, barban, cisplatin, and bleomycin; member of the major facilitator superfamily of transporters conferring multiple drug resistance (MFS-MDR) 1.98829081903677 397.972198486328 693.898284912109 QDR2 6855 // multidrug transport // inferred from mutant phenotype 5887 // integral to plasma membrane // inferred from direct assay 15559 // multidrug efflux pump activity // inferred from mutant phenotype 657.797546386719 341.337158203125 454.607238769531 729.9990234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL121W /GEN=POG1 /DB_XREF=GI:6322070 /SEG=NC_001141:+132241,133869 /DEF=Quinidine resistance 2 /NOTE=Yil121wp --- --- --- --- --- S0001383 // span:62-84,99-121,128-147,153-175,188-210,215-237,300-322,337-359,411-433,438-460,473-492,502-524 // numtm:12 S0001383 // QDR2 SGDID:S0001383, Chr IX from 132241-133869, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016385 // cdna:Genscan chromosome:SGD1:IX:132241:133869:1 // ensembl // 11 // --- /// GENEFINDER00000019030 // cdna:GeneFinder chromosome:SGD1:IX:132241:133869:1 // ensembl // 11 // --- /// YIL121W // cdna:known chromosome:SGD1:IX:132241:133869:1 gene:YIL121W // ensembl // 11 // --- --- No cerevisiae_gene 1.98829081903677 -1.92711965450674 -1.25587129916463 -1.44695792387107 1.1097624602697 Max fold change below threshold 4 1.98829081903677 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770889_at YLL040C.S1 Protein of unknown function; heterooligomeric or homooligomeric complex; peripherally associated with membranes; homologous to human COH1; involved in sporulation, vacuolar protein sorting and protein-Golgi retention 1.98817585627228 1326.44689941406 1459.25256347656 VPS13 7039 // vacuolar protein catabolism // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype /// 45053 // protein-Golgi retention // inferred from mutant phenotype /// 45324 // late endosome to vacuole transport // inferred from genetic interaction /// 45324 // late endosome to vacuole transport // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5768 // endosome // inferred from direct assay /// 19898 // extrinsic to membrane // inferred from direct assay --- 1440.34057617188 1199.15026855469 1453.74353027344 1478.16455078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL040C /GEN=VPS13 /DB_XREF=GI:6322988 /SEG=NC_001144:-54210,63644 /DEF=homologous to human COH1 /NOTE=Vps13p; go_component: extrinsic to membrane [goid GO:0019898] [evidence IDA] [pmid 9314526]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: late endosome to vacuole transport [goid GO:0045324] [evidence IGI,IMP] [pmid 9265642]; go_process: protein-Golgi retention [goid GO:0045053] [evidence IMP] [pmid 9314526] --- --- --- --- --- --- S0003963 // VPS13 SGDID:S0003963, Chr XII from 63644-54210, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017676 // cdna:Genscan chromosome:SGD1:XII:54210:63644:-1 // ensembl // 11 // --- /// GENEFINDER00000024787 // cdna:GeneFinder chromosome:SGD1:XII:54210:63314:-1 // ensembl // 11 // --- /// YLL040C // cdna:known chromosome:SGD1:XII:54210:63644:-1 gene:YLL040C // ensembl // 11 // --- --- No cerevisiae_gene -1.98817585627228 -1.20113434816463 1.08046709669327 1.00930540618191 1.02626043814575 Max fold change below threshold 4 1.98817585627228 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776046_at YBR001C.S1 Neutral trehalase, degrades trehalose; required for thermotolerance and may mediate resistance to other cellular stresses 1.98798116337638 1043.15545654297 1100.28839111328 NTH2 5993 // trehalose catabolism // traceable author statement /// 6950 // response to stress // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4555 // alpha,alpha-trehalase activity // traceable author statement 1144.06787109375 1056.35717773438 1029.95373535156 1056.50891113281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR001C /GEN=NTH2 /DB_XREF=GI:6319473 /SEG=NC_001134:-238905,241247 /DEF=Neutral trehalase, degrades trehalose; required for thermotolerance and may mediate resistance to other cellular stresses /NOTE=Nth2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: alpha,alpha-trehalase activity [goid GO:0004555] [evidence TAS] [pmid 9308367]; go_process: response to stress [goid GO:0006950] [evidence TAS] [pmid 9308367]; go_process: trehalose catabolism [goid GO:0005993] [evidence TAS] [pmid 9308367] --- --- --- --- --- --- S0000205 // NTH2 SGDID:S0000205, Chr II from 241285-238943, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021139 // cdna:Genscan chromosome:SGD1:II:238943:241285:-1 // ensembl // 11 // --- /// GENEFINDER00000022406 // cdna:GeneFinder chromosome:SGD1:II:238943:241285:-1 // ensembl // 11 // --- /// YBR001C // cdna:known chromosome:SGD1:II:238943:241285:-1 gene:YBR001C // ensembl // 11 // --- --- No cerevisiae_gene -1.98798116337638 -1.08303128450123 1.41107609266721 -1.11079539966253 -1.08287574202006 Max fold change below threshold 4 1.98798116337638 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774490_at YDR265W.S1 RING finger peroxisomal membrane peroxin required for peroxisomal matrix protein import, interacts with Pex12p, links ubiquitin-conjugating Pex4p to protein import machinery; mutations in human homolog cause a variety of peroxisomal disorders 1.98755412848737 818.859191894531 894.091705322266 PEX10 7031 // peroxisome organization and biogenesis // traceable author statement 5778 // peroxisomal membrane // traceable author statement 5515 // protein binding // traceable author statement 887.85009765625 806.430969238281 831.287414550781 900.333312988281 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR265W /GEN=PEX10 /DB_XREF=GI:6320471 /SEG=NC_001136:+998856,999869 /DEF=Pex2p, Pex10p, and Pex12p together make up the RING finger complex of the peroxisomal import machinery. /NOTE=Pex10p; go_component: peroxisomal membrane [goid GO:0005778] [evidence TAS] [pmid 12667447]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 12667447]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence TAS] --- --- --- --- --- S0002673 // span:102-124 // numtm:1 S0002673 // PEX10 SGDID:S0002673, Chr IV from 998858-999871, Verified ORF // sgd // 11 // --- /// YDR265W // cdna:known chromosome:SGD1:IV:998858:999871:1 gene:YDR265W // ensembl // 11 // --- --- No cerevisiae_gene -1.98755412848737 -1.10096230368592 1.33940712758006 -1.06804227047758 1.0140600483854 Max fold change below threshold 4 1.98755412848737 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773062_at YBR003W.S1 Hexaprenyl pyrophosphate synthetase, catalyzes the first step in ubiquinone (coenzyme Q) biosynthesis 1.98722698674793 1372.18579101563 2421.62438964844 COQ1 6743 // ubiquinone metabolism // inferred from mutant phenotype 5739 // mitochondrion // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from direct assay 10 // trans-hexaprenyltranstransferase activity // inferred from mutant phenotype 2454.90698242188 1235.34301757813 1509.02856445313 2388.341796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR003W /GEN=COQ1 /DB_XREF=GI:6319475 /SEG=NC_001134:+242773,244194 /DEF=Hexaprenyl pyrophosphate synthetase, catalyzes the first step in ubiquinone (coenzyme Q) biosynthesis /NOTE=Coq1p; go_component: mitochondrion [goid GO:0005739] [evidence IMP] [pmid 10760477]; go_function: trans-hexaprenyltranstransferase activity [goid GO:0000010] [evidence IMP] [pmid 9708911]; go_process: ubiquinone metabolism [goid GO:0006743] [evidence IMP] [pmid 9708911] --- --- --- --- --- --- S0000207 // COQ1 SGDID:S0000207, Chr II from 242811-244232, Verified ORF // sgd // 11 // --- /// GENSCAN00000021141 // cdna:Genscan chromosome:SGD1:II:242967:244232:1 // ensembl // 11 // --- /// GENEFINDER00000022145 // cdna:GeneFinder chromosome:SGD1:II:243360:244232:1 // ensembl // 11 // --- /// YBR003W // cdna:known chromosome:SGD1:II:242811:244232:1 gene:YBR003W // ensembl // 11 // --- --- No cerevisiae_gene -1.50147821398243 -1.98722698674793 -1.03087129357429 -1.62681279880977 -1.02787087913211 Max fold change below threshold 4 1.98722698674793 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777786_at YER049W.S1 Hypothetical protein 1.98716327078629 368.64453125 771.691558837891 --- --- 5634 // nucleus // inferred from direct assay --- 670.293029785156 348.380096435547 388.908966064453 873.090087890625 0.000732421991415322 0.00122069998178631 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER049W /GEN=CAJ1 /DB_XREF=GI:6320890 /SEG=NC_001137:+251727,253661 /DEF=Hypothetical ORF /NOTE=Yer049wp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000851 // YER049W SGDID:S0000851, Chr V from 251727-253661, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016844 // cdna:Genscan chromosome:SGD1:V:251727:253661:1 // ensembl // 11 // --- /// GENEFINDER00000019584 // cdna:GeneFinder chromosome:SGD1:V:251727:253661:1 // ensembl // 11 // --- /// YER049W // cdna:known chromosome:SGD1:V:251727:253661:1 gene:YER049W // ensembl // 11 // --- --- No cerevisiae_gene 1.98716327078629 -1.92402791274032 -1.08594205866476 -1.7235216677264 1.3025498537117 Max fold change below threshold 4 1.98716327078629 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774282_at YLR348C.S1 Mitochondrial dicarboxylate carrier, integral membrane protein, catalyzes a dicarboxylate-phosphate exchange across the inner mitochondrial membrane, transports cytoplasmic dicarboxylates into the mitochondrial matrix 1.98685677395767 649.842712402344 1238.71966552734 DIC1 6835 // dicarboxylic acid transport // inferred from direct assay /// 6835 // dicarboxylic acid transport // inferred from sequence similarity 5740 // mitochondrial membrane // inferred from sequence similarity /// 5740 // mitochondrial membrane // inferred from direct assay 5310 // dicarboxylic acid transporter activity // inferred from sequence similarity /// 5310 // dicarboxylic acid transporter activity // inferred from direct assay 1179.48120117188 593.641784667969 706.043640136719 1297.95812988281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR348C /GEN=DIC1 /DB_XREF=GI:6323381 /SEG=NC_001144:-826976,827872 /DEF=Mitochondrial dicarboxylate carrier, integral membrane protein, catalyzes a dicarboxylate-phosphate exchange across the inner mitochondrial membrane, transports cytoplasmic dicarboxylates into the mitochondrial matrix /NOTE=Dic1p; go_component: mitochondrial membrane [goid GO:0005740] [evidence ISS] [pmid 9559855]; go_function: dicarboxylic acid transporter activity [goid GO:0005310] [evidence ISS] [pmid 9020177]; go_function: dicarboxylic acid transporter activity [goid GO:0005310] [evidence IDA] [pmid 9559855]; go_process: dicarboxylic acid transport [goid GO:0006835] [evidence ISS] [pmid 9020177]; go_process: dicarboxylic acid transport [goid GO:0006835] [evidence IDA] [pmid 9559855] --- --- --- --- --- --- S0004340 // DIC1 SGDID:S0004340, Chr XII from 827872-826976, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018084 // cdna:Genscan chromosome:SGD1:XII:826976:827788:-1 // ensembl // 11 // --- /// GENEFINDER00000024733 // cdna:GeneFinder chromosome:SGD1:XII:826976:827872:-1 // ensembl // 11 // --- /// YLR348C // cdna:known chromosome:SGD1:XII:826976:827872:-1 gene:YLR348C // ensembl // 11 // --- YLR349W // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene -1.5093099111946 -1.98685677395767 1.04848333369557 -1.6705499973677 1.10044833999323 Max fold change below threshold 4 1.98685677395767 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778633_at YIL156W.S1 Ubiquitin-specific protease that cleaves ubiquitin-protein fusions 1.98643537309382 195.328346252441 293.92106628418 UBP7 16579 // protein deubiquitination // traceable author statement 5737 // cytoplasm // inferred from curator 4843 // ubiquitin-specific protease activity // traceable author statement 265.835327148438 181.742309570313 208.91438293457 322.006805419922 0.000732421991415322 0.00195312988944352 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL156W /GEN=UBP7 /DB_XREF=GI:6322035 /SEG=NC_001141:+48091,51306 /DEF=Ubiquitin-specific protease that cleaves ubiquitin-protein fusions /NOTE=Ubp7p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 8982460]; go_function: ubiquitin-specific protease activity [goid GO:0004843] [evidence TAS] [pmid 8982460]; go_process: protein deubiquitination [goid GO:0016579] [evidence TAS] [pmid 8982460] --- --- --- --- --- --- S0001418 // UBP7 SGDID:S0001418, Chr IX from 48091-51306, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019089 // cdna:GeneFinder chromosome:SGD1:IX:48091:51306:1 // ensembl // 11 // --- /// GENSCAN00000016357 // cdna:Genscan chromosome:SGD1:IX:48118:51306:1 // ensembl // 11 // --- /// YIL156W // cdna:known chromosome:SGD1:IX:48091:51306:1 gene:YIL156W // ensembl // 11 // --- --- No cerevisiae_gene -1.61361447362145 -1.46270468212352 1.98643537309382 -1.27246062915493 1.21130178172339 Max fold change below threshold 4 1.98643537309382 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770388_at YDR243C.S1 RNA helicase in the DEAD-box family, involved in RNA isomerization at the 5' splice site 1.98574795288966 153.528816223145 165.024841308594 PRP28 360 // cis assembly of U2-type pre-catalytic spliceosome // traceable author statement 5681 // spliceosome complex // traceable author statement 4004 // ATP-dependent RNA helicase activity // traceable author statement /// 31202 // RNA splicing factor activity, transesterification mechanism // traceable author statement 153.351806640625 157.048675537109 150.00895690918 176.697875976563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR243C /GEN=PRP28 /DB_XREF=GI:6320449 /SEG=NC_001136:-948510,950276 /DEF=RNA helicase in the DEAD-box family, involved in RNA isomerization at the 5' splice site /NOTE=Prp28p; go_component: spliceosome complex [goid GO:0005681] [evidence TAS] [pmid 9476892]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 9476892]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence TAS] [pmid 9476892]; go_process: cis assembly of U2-type pre-catalytic spliceosome [goid GO:0000360] [evidence TAS] --- --- --- --- --- --- S0002651 // PRP28 SGDID:S0002651, Chr IV from 950278-948512, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023936 // cdna:GeneFinder chromosome:SGD1:IV:948512:950278:-1 // ensembl // 11 // --- /// GENSCAN00000025286 // cdna:Genscan chromosome:SGD1:IV:948512:950278:-1 // ensembl // 11 // --- /// YDR243C // cdna:known chromosome:SGD1:IV:948512:950278:-1 gene:YDR243C // ensembl // 11 // --- --- No cerevisiae_gene -1.98574795288966 1.02410711016368 1.87824157139696 -1.02228433421792 1.1522386325102 Max fold change below threshold 4 1.98574795288966 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775817_at SPBC31E1.03.S1 --- 1.98548644781113 --- --- --- --- 0.198548644781113 0.152957901358604 0.308248043060303 0.0863658338785172 0.981445014476776 0.9912109375 0.953857004642487 0.999267995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31E1.03 /GEN=ubl4 /DEF=ubiquitin family protein --- --- --- --- --- --- SPBC31E1.03 // |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.1140756031015 -1.298060727936 -1.63739934359629 1.55250640667997 -1.98548644781113 Max fold change below threshold 0 1.98548644781113 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777838_at YBL047C.S1 Key endocytic protein involved in a network of interactions with other endocytic proteins, binds membranes in a ubiquitin-dependent manner, may also bind ubiquitinated membrane-associated proteins 1.98502793972343 3375.19140625 3407.50061035156 EDE1 6897 // endocytosis // inferred from mutant phenotype 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 30479 // actin cortical patch // inferred from direct assay --- 3386.99487304688 3549.11987304688 3201.26293945313 3428.00634765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL047C /GEN=EDE1 /DB_XREF=GI:6319424 /SEG=NC_001134:-127860,132005 /DEF=Key endocytic protein involved in a network of interactions with other endocytic proteins, binds membranes in a ubiquitin-dependent manner, may also bind ubiquitinated membrane-associated proteins /NOTE=Ede1p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10954428]; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 11452010]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 11452010]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 10954428] --- --- --- --- scop // a.2.6.Effector domain of the protein kinase pkn/prk1 // All alpha proteins; Long alpha-hairpin; Effector domain of the protein kinase pkn/prk1; Effector domain of the protein kinase pkn/prk1 // 7.69999980926514 --- S0000143 // EDE1 SGDID:S0000143, Chr II from 132043-127898, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021100 // cdna:Genscan chromosome:SGD1:II:127898:132043:-1 // ensembl // 11 // --- /// GENEFINDER00000022242 // cdna:GeneFinder chromosome:SGD1:II:127898:132043:-1 // ensembl // 11 // --- /// YBL047C // cdna:known chromosome:SGD1:II:127898:132043:-1 gene:YBL047C // ensembl // 11 // --- --- No cerevisiae_gene -1.98502793972343 1.04786691627146 -1.17839718430882 -1.0580183312357 1.01210851393244 Max fold change below threshold 4 1.98502793972343 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771112_at YNL265C.S1 Putative translation initiation factor, as suggested by computational analysis of large-scale protein-protein interaction data 1.98488510348558 955.802093505859 547.262756347656 IST1 6412 // protein biosynthesis // RCA 5768 // endosome // inferred from direct assay 3743 // translation initiation factor activity // RCA 524.934204101563 869.670104980469 1041.93408203125 569.59130859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL265C /GEN=IST1 /DB_XREF=GI:6324064 /SEG=NC_001146:-144279,145280 /DEF=Putative translation initiation factor, as suggested by computational analysis of large-scale protein-protein interaction data /NOTE=Ist1p; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 14562095]; go_function: translation initiation factor activity [goid GO:0003743] [evidence TAS] [pmid 14566057]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0005209 // IST1 SGDID:S0005209, Chr XIV from 145280-145254,145148-144279, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020492 // cdna:GeneFinder chromosome:SGD1:XIV:144279:145124:-1 // ensembl // 11 // --- /// YNL265C // cdna:known chromosome:SGD1:XIV:144279:145280:-1 gene:YNL265C // ensembl // 11 // --- YNL266W // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene -1.13682925444587 1.65672211523905 1.40353597142127 1.98488510348558 1.08507181308297 Max fold change below threshold 4 1.98488510348558 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775740_at YDL206W.S1 Hypothetical protein 1.98485802855071 617.24609375 1009.16314697266 --- --- --- --- 1037.81665039063 711.625244140625 522.866943359375 980.509643554688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL206W /GEN=GLE1 /DB_XREF=GI:6319995 /SEG=NC_001136:+90177,92465 /DEF=Hypothetical ORF /NOTE=Ydl206wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002365 // span:5-27,34-53,103-125,156-175,179-199,502-524,555-577,590-612,617-639,651-673,709-731,738-760 // numtm:12 S0002365 // YDL206W SGDID:S0002365, Chr IV from 90177-92465, Uncharacterized ORF // sgd // 11 // --- /// YDL206W // cdna:known chromosome:SGD1:IV:90177:92465:1 gene:YDL206W // ensembl // 11 // --- --- No cerevisiae_gene -1.27246630209968 -1.45837525992198 -1.12325357713803 -1.98485802855071 -1.05844614299578 Max fold change below threshold 4 1.98485802855071 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777448_at YDL224C.S1 Putative RNA binding protein and partially redundant Whi3p homolog that regulates the cell size requirement for passage through Start and commitment to cell division 1.98461727295471 511.947555541992 980.870208740234 WHI4 8361 // regulation of cell size // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay 3723 // RNA binding // inferred from sequence similarity 940.988098144531 474.140838623047 549.754272460938 1020.75231933594 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL224C /GEN=WHI4 /DB_XREF=GI:6319977 /SEG=NC_001136:-54398,56347 /DEF=Putative RNA binding protein and partially redundant Whi3p homolog that regulates the cell size requirement for passage through Start and commitment to cell division /NOTE=Whi4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 11290704]; go_process: regulation of cell size [goid GO:0008361] [evidence IGI] [pmid 11290704] --- --- --- --- --- --- S0002383 // WHI4 SGDID:S0002383, Chr IV from 56347-54398, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023798 // cdna:GeneFinder chromosome:SGD1:IV:54398:56116:-1 // ensembl // 10 // --- /// GENSCAN00000024935 // cdna:Genscan chromosome:SGD1:IV:54398:56116:-1 // ensembl // 10 // --- /// YDL224C // cdna:known chromosome:SGD1:IV:54398:56347:-1 gene:YDL224C // ensembl // 10 // --- --- No cerevisiae_gene 1.06480050234969 -1.98461727295471 1.12756463597777 -1.71165217858565 1.08476645065829 Max fold change below threshold 4 1.98461727295471 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777296_at SPAC4A8.04.S1 --- 1.98371535129934 --- --- --- --- 14.300178527832 15.8168888092041 14.2136764526367 7.20878553390503 0.0561522990465164 0.018554700538516 0.000732421991415322 0.0952147990465164 M P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4A8.04 /GEN=isp6 /DEF=serine protease --- --- --- --- --- --- D14063 // Schizosaccharomyces pombe mRNA fo serine protease. // gb // 11 // --- /// SPAC4A8.04 // |isp6|prb1|serine protease|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.59563912401949 1.10606233190866 -1.40256173729257 -1.00608583398416 -1.98371535129934 Max fold change below threshold 4 1.98371535129934 Max fold change below threshold MAPPPA No 3 0 MPPA 1 2 1 No No 1 < x = 2
1772727_at SPBC14C8.07c.S1 --- 1.98333922766271 --- --- --- --- 0.261400401592255 0.275531798601151 0.437578439712524 0.343327939510345 0.943848013877869 0.994140982627869 0.953857004642487 0.981445014476776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14C8.07c /GEN=cdc18 /DEF=involved in DNA replication (initiation) --- --- --- --- --- --- SPBC14C8.07c // |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.54065525332961 1.05406034926809 1.98333922766271 1.67397768728405 1.31341779667916 Max fold change below threshold 0 1.98333922766271 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772284_at YLR225C.S1 Hypothetical protein 1.98315441360444 937.892150878906 791.331268310547 --- --- 5737 // cytoplasm // inferred from direct assay --- 766.95458984375 802.837524414063 1072.94677734375 815.707946777344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR225C /GEN=IFH1 /DB_XREF=GI:6323254 /SEG=NC_001144:-587697,588920 /DEF=Hypothetical ORF /NOTE=Ylr225cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004215 // YLR225C SGDID:S0004215, Chr XII from 588920-587697, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017995 // cdna:Genscan chromosome:SGD1:XII:587697:588920:-1 // ensembl // 11 // --- /// YLR225C // cdna:known chromosome:SGD1:XII:587697:588920:-1 gene:YLR225C // ensembl // 11 // --- --- No cerevisiae_gene 1.98315441360444 1.04678625702941 -1.02419584043495 1.39897041044156 1.06356746224509 Max fold change below threshold 4 1.98315441360444 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772426_at YEL020C.S1 Hypothetical protein 1.98311055571218 1080.17999267578 1590.94781494141 --- --- 5737 // cytoplasm // inferred from direct assay --- 1588.48559570313 1024.51403808594 1135.84594726563 1593.41003417969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL020C /GEN=TIM9 /DB_XREF=GI:6320816 /SEG=NC_001137:-118617,120299 /DEF=Hypothetical ORF /NOTE=Yel020cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000746 // YEL020C SGDID:S0000746, Chr V from 120299-118617, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016787 // cdna:Genscan chromosome:SGD1:V:118617:120299:-1 // ensembl // 11 // --- /// GENEFINDER00000019760 // cdna:GeneFinder chromosome:SGD1:V:118617:120299:-1 // ensembl // 11 // --- /// YEL020C // cdna:known chromosome:SGD1:V:118617:120299:-1 gene:YEL020C // ensembl // 11 // --- --- No cerevisiae_gene -1.98311055571218 -1.55047714004079 -1.13333951698698 -1.39850443585872 1.00310008380931 Max fold change below threshold 4 1.98311055571218 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779929_at YER030W.S1 Hypothetical protein 1.9830595456134 904.694213867188 473.024703979492 --- --- 5634 // nucleus // inferred from direct assay --- 462.647766113281 891.930358886719 917.458068847656 483.401641845703 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER030W /GEN=SMB1 /DB_XREF=GI:6320868 /SEG=NC_001137:+213415,213897 /DEF=Hypothetical ORF /NOTE=Yer030wp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000832 // YER030W SGDID:S0000832, Chr V from 213415-213897, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000019624 // cdna:GeneFinder chromosome:SGD1:V:213211:213897:1 // ensembl // 11 // --- /// GENSCAN00000016830 // cdna:Genscan chromosome:SGD1:V:213436:213897:1 // ensembl // 11 // --- /// YER030W // cdna:known chromosome:SGD1:V:213415:213897:1 gene:YER030W // ensembl // 11 // --- --- No cerevisiae_gene 1.19666080080781 1.92788212592023 1.27458446355228 1.9830595456134 1.04485891266 Max fold change below threshold 4 1.9830595456134 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775378_at YDL020C.S1 Transcription factor that stimulates expression of proteasome genes; Rpn4p levels are in turn regulated by the 26S proteasome in a negative feedback control mechanism; RPN4 is transcriptionally regulated by various stress responses 1.98295650265827 5958.8701171875 3535.61596679688 RPN4 86 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 6511 // ubiquitin-dependent protein catabolism // traceable author statement /// 46685 // response to arsenic // inferred from mutant phenotype /// 46685 // response to arsenic // inferred from expression pattern 5838 // proteasome regulatory particle (sensu Eukaryota) // inferred from physical interaction /// 5839 // proteasome core complex (sensu Eukaryota) // inferred from direct assay /// 5839 // proteasome core complex (sensu Eukaryota) // inferred from physical interaction 16563 // transcriptional activator activity // inferred from direct assay 3680.52416992188 7298.3193359375 4619.4208984375 3390.70776367188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL020C /GEN=RPN4 /DB_XREF=GI:6320184 /SEG=NC_001136:-415110,416705 /DEF=Involved in ubiquitin degradation pathway. May act as common transcription factor on proteasomal and proteasome-related genes. /NOTE=Rpn4p; go_component: proteasome core complex (sensu Eukarya) [goid GO:0005839] [evidence IDA,IPI] [pmid 11248031]; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence IPI] [pmid 9512348]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 9697412]; go_function: transcriptional activator activity [goid GO:0016563] [evidence IDA] [pmid 10350051]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence IMP] [pmid 11248031]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 9697412] --- --- --- --- --- --- S0002178 // RPN4 SGDID:S0002178, Chr IV from 416705-415110, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023465 // cdna:GeneFinder chromosome:SGD1:IV:415110:416705:-1 // ensembl // 11 // --- /// GENSCAN00000025085 // cdna:Genscan chromosome:SGD1:IV:415110:416705:-1 // ensembl // 11 // --- /// YDL020C // cdna:known chromosome:SGD1:IV:415110:416705:-1 gene:YDL020C // ensembl // 11 // --- --- No cerevisiae_gene 1.11531991763815 1.98295650265827 1.02282436179088 1.25509864496707 -1.08547372007553 Max fold change below threshold 4 1.98295650265827 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778668_at YHR044C.S1 2-deoxyglucose-6-phosphate phosphatase, similar to Dog2p, member of a family of low molecular weight phosphatases; confers 2-deoxyglucose resistance when overexpressed, in vivo substrate has not yet been identified 1.98283854059217 28.8148202896118 32.4608383178711 DOG1 6006 // glucose metabolism // inferred from sequence similarity --- 3850 // 2-deoxyglucose-6-phosphatase activity // inferred from direct assay 32.3559646606445 16.3180027008057 41.311637878418 32.5657119750977 0.000732421991415322 0.014160200022161 0.000244141003349796 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR044C /GEN=DOG1 /DB_XREF=GI:6321834 /SEG=NC_001140:-194060,194800 /DEF=2-deoxyglucose-6-phosphate phosphatase, similar to Dog2p, member of a family of low molecular weight phosphatases; confers 2-deoxyglucose resistance when overexpressed, in vivo substrate has not yet been identified /NOTE=Dog1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: 2-deoxyglucose-6-phosphatase activity [goid GO:0003850] [evidence IDA] [pmid 8553694]; go_process: glucose metabolism [goid GO:0006006] [evidence ISS] [pmid 8553694] --- --- --- --- --- --- S0001086 // DOG1 SGDID:S0001086, Chr VIII from 194800-194060, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016591 // cdna:Genscan chromosome:SGD1:VIII:194060:194800:-1 // ensembl // 11 // --- /// YHR044C // cdna:known chromosome:SGD1:VIII:194060:194800:-1 gene:YHR044C // ensembl // 11 // --- --- No cerevisiae_gene -1.18491740775909 -1.98283854059217 1.15791491598249 1.27678585113138 1.006482493001 Max fold change below threshold 4 1.98283854059217 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1773737_at YFL055W.S1 Low-affinity amino acid permease, may act to supply the cell with amino acids as nitrogen source in nitrogen-poor conditions; transcription is induced under conditions of sulfur limitation 1.98261776339095 7.97907447814941 6.00617384910584 AGP3 6865 // amino acid transport // inferred from direct assay /// 6865 // amino acid transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from sequence similarity 15171 // amino acid transporter activity // inferred from direct assay /// 15171 // amino acid transporter activity // inferred from mutant phenotype 7.73414278030396 9.57733631134033 6.3808126449585 4.27820491790771 0.0805663987994194 0.0805663987994194 0.129638999700546 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL055W /GEN=AGP3 /DB_XREF=GI:14318464 /SEG=NC_001138:+17004,18680 /DEF=Low-affinity amino acid permease, may act to supply the cell with amino acids as nitrogen source in nitrogen-poor conditions; transcription is induced under conditions of sulfur limitation /NOTE=Agp3p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 10654085]; go_function: amino acid transporter activity [goid GO:0015171] [evidence IDA] [pmid 10654085]; go_function: amino acid transporter activity [goid GO:0015171] [evidence IMP] [pmid 14697254]; go_process: amino acid transport [goid GO:0006865] [evidence IDA] [pmid 10654085]; go_process: amino acid transport [goid GO:0006865] [evidence IMP] [pmid 14697254] --- --- --- --- --- S0001839 // span:57-79,83-105,125-147,167-189,194-216,241-263,284-301,330-352,377-399,404-426,447-469,484-506 // numtm:12 S0001839 // AGP3 SGDID:S0001839, Chr VI from 17004-18680, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018530 // cdna:GeneFinder chromosome:SGD1:VI:17004:18680:1 // ensembl // 11 // --- /// GENSCAN00000023194 // cdna:Genscan chromosome:SGD1:VI:17004:18680:1 // ensembl // 11 // --- /// YFL055W // cdna:known chromosome:SGD1:VI:17004:18680:1 gene:YFL055W // ensembl // 11 // --- --- No cerevisiae_gene -1.52943019655837 1.23831904625944 -1.98261776339095 -1.21209369568541 -1.80780091854188 Max fold change below threshold 4 1.98261776339095 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772756_at YGR146C.S1 Hypothetical protein 1.9822446479208 2288.70739746094 1323.07885742188 --- --- --- --- 1242.33557128906 2462.61303710938 2114.8017578125 1403.82214355469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR146C /GEN=THI4 /DB_XREF=GI:6321585 /SEG=NC_001139:-784226,784861 /DEF=Hypothetical ORF /NOTE=Ygr146cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003378 // YGR146C SGDID:S0003378, Chr VII from 784863-784228, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000019453 // cdna:Genscan chromosome:SGD1:VII:784228:784863:-1 // ensembl // 10 // --- /// GENEFINDER00000021536 // cdna:GeneFinder chromosome:SGD1:VII:784228:784863:-1 // ensembl // 10 // --- /// YGR146C // cdna:known chromosome:SGD1:VII:784228:784863:-1 gene:YGR146C // ensembl // 10 // --- --- No cerevisiae_gene 1.26415316256032 1.9822446479208 1.01735769900856 1.70227900310232 1.12998627423834 Max fold change below threshold 4 1.9822446479208 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777659_at YDR338C.S1 Hypothetical protein 1.98223363541807 389.432388305664 640.473175048828 --- --- --- --- 607.763793945313 306.605529785156 472.259246826172 673.182556152344 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR338C /GEN=MRPS28 /DB_XREF=GI:6320545 /SEG=NC_001136:-1147369,1149456 /DEF=Hypothetical ORF /NOTE=Ydr338cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002746 // span:236-258,265-287,307-329,350-364,379-401,408-430,486-508,529-551,603-625,630-652 // numtm:10 S0002746 // YDR338C SGDID:S0002746, Chr IV from 1149458-1147371, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023501 // cdna:GeneFinder chromosome:SGD1:IV:1147371:1149398:-1 // ensembl // 11 // --- /// GENSCAN00000025366 // cdna:Genscan chromosome:SGD1:IV:1147371:1149398:-1 // ensembl // 11 // --- /// YDR338C // cdna:known chromosome:SGD1:IV:1147371:1149458:-1 gene:YDR338C // ensembl // 11 // --- --- No cerevisiae_gene -1.47453151433613 -1.98223363541807 1.33950543514392 -1.28692830903747 1.10763846556631 Max fold change below threshold 4 1.98223363541807 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772014_at SPBC27B12.01c.S1 --- 1.98103849540206 --- --- --- --- 5.5409574508667 8.40545082092285 4.69054698944092 2.79699635505676 0.274170011281967 0.24609400331974 0.149657994508743 0.1884765625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC27B12.01c /GEN=mmm1 /DEF=Mdm10pMdm12pMmm1p complex (predicted) --- --- --- --- --- --- SPBC27B12.01c // |mmm1|SPBC30B4.09c|Mdm10p/Mdm12p/Mmm1p complex|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.09864279794806 1.51696722009805 -1.43695707484859 -1.18130304703059 -1.98103849540206 Max fold change below threshold 4 1.98103849540206 Max fold change below threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778350_at YJR034W.S1 Protein required for assembly of cytochrome c oxidase 1.98054179205196 215.599609375 171.585586547852 PET191 8535 // cytochrome c oxidase complex assembly // inferred from mutant phenotype 5743 // mitochondrial inner membrane // traceable author statement --- 162.625366210938 225.026748657227 206.172470092773 180.545806884766 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR034W /GEN=PET191 /DB_XREF=GI:6322494 /SEG=NC_001142:+496597,496923 /DEF=Protein required for assembly of cytochrome c oxidase /NOTE=Pet191p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence TAS] [pmid 8811190]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 8811190]; go_process: cytochrome c oxidase biogenesis [goid GO:0008535] [evidence IMP] [pmid 8381337] --- --- --- --- --- --- S0003795 // PET191 SGDID:S0003795, Chr X from 496597-496923, Verified ORF // sgd // 11 // --- /// GENSCAN00000024160 // cdna:Genscan chromosome:SGD1:X:496597:496923:1 // ensembl // 11 // --- /// GENEFINDER00000024497 // cdna:GeneFinder chromosome:SGD1:X:496597:496923:1 // ensembl // 11 // --- /// YJR034W // cdna:known chromosome:SGD1:X:496597:496923:1 gene:YJR034W // ensembl // 11 // --- --- No cerevisiae_gene -1.19776446405914 1.3837124791796 1.98054179205196 1.26777559304833 1.11019462148718 Max fold change below threshold 4 1.98054179205196 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771067_at YKL112W.S1 DNA binding protein with possible chromatin-reorganizing activity involved in transcriptional activation, gene silencing, and DNA replication and repair 1.9803687321049 291.194107055664 577.561462402344 ABF1 6260 // DNA replication // traceable author statement /// 30466 // chromatin silencing at silent mating-type cassette // traceable author statement /// 45941 // positive regulation of transcription // traceable author statement 790 // nuclear chromatin // traceable author statement 3677 // DNA binding // traceable author statement /// 3682 // chromatin binding // traceable author statement /// 3700 // transcription factor activity // traceable author statement 538.31103515625 271.823638916016 310.564575195313 616.811889648438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL112W /GEN=ABF1 /DB_XREF=GI:6322737 /SEG=NC_001143:+226216,228411 /DEF=DNA binding protein with possible chromatin-reorganizing activity involved in transcriptional activation, gene silencing, and DNA replication and repair /NOTE=Abf1p; go_component: nuclear chromatin [goid GO:0000790] [evidence TAS] [pmid 11756546]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 3046937]; go_function: chromatin binding [goid GO:0003682] [evidence TAS] [pmid 11756546]; go_function: transcription factor activity [goid GO:0003700] [evidence TAS] [pmid 11937506]; go_process: DNA replication [goid GO:0006260] [evidence TAS] [pmid 11756546]; go_process: chromatin silencing at silent mating-type cassette (sensu Fungi) [goid GO:0030466] [evidence TAS] [pmid 11756546]; go_process: positive regulation of transcription [goid GO:0045941] [evidence TAS] [pmid 11756546] --- --- --- --- --- --- S0001595 // ABF1 SGDID:S0001595, Chr XI from 226216-228411, Verified ORF // sgd // 11 // --- /// GENSCAN00000018332 // cdna:Genscan chromosome:SGD1:XI:226216:228411:1 // ensembl // 11 // --- /// GENEFINDER00000023178 // cdna:GeneFinder chromosome:SGD1:XI:226216:228411:1 // ensembl // 11 // --- /// YKL112W // cdna:known chromosome:SGD1:XI:226216:228411:1 gene:YKL112W // ensembl // 11 // --- YKL111C // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene 1.585715277003 -1.9803687321049 -1.2482337115837 -1.73333045089804 1.14582806103799 Max fold change below threshold 4 1.9803687321049 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778396_at SPAC25B8.19c.S1 --- 1.98028776419751 --- --- --- --- 4.67905378341675 8.57614421844482 9.26587295532227 6.31059741973877 0.303710997104645 0.149657994508743 0.0239257998764515 0.149657994508743 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC25B8.19c /DEF=transcription factor (predicted) --- --- --- --- --- --- SPAC25B8.19c // ||SPAC683.01c|transcription factor |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.41741370126246 1.83288002562397 1.44007151150342 1.98028776419751 1.34869093450143 Max fold change below threshold 4 1.98028776419751 Max fold change below threshold APAAPA No 4 0 AAPA 3 1 0 No No x = 1
AFFX-r2-P1-cre-3_at AFFX-r2-P1-cre-3 --- 1.98005935124862 --- --- --- --- 10438.5673828125 11974.9072265625 5500.83935546875 5271.845703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1032-1270 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. --- --- --- --- --- --- AFFX-r2-P1-cre-3 // Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1032-1270 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. // affx // --- // --- /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// AFFX-r2-P1-cre-3 // --- // unknown // --- // --- /// AFFX-r2-P1-cre-3 // --- // unknown // --- // --- /// AFFX-r2-P1-cre-3 // --- // unknown // --- // --- /// AFFX-r2-P1-cre-3 // --- // unknown // --- // --- /// AFFX-r2-P1-cre-3 // --- // gb // --- // --- /// AFFX-r2-P1-cre-3 // Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1032-1270 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. // affx // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-P1-cre-3 // --- // unknown // --- // --- /// AFFX-r2-P1-cre-3 // --- // affx // --- // --- /// AFFX-r2-P1-cre-3 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-P1-cre-3 // --- // affx // --- // --- /// AFFX-r2-P1-cre-3 // --- // affx // --- // --- /// AFFX-r2-P1-cre-3 // --- // affx // --- // --- /// AFFX-r2-P1-cre-3 // --- // affx // --- // --- /// AFFX-r2-P1-cre-3 // --- // affx // --- // --- /// AFFX-r2-P1-cre-3 // --- // affx // --- // --- /// AFFX-r2-P1-cre-3 // --- // affx // --- // --- /// AFFX-r2-P1-cre-3 // --- // affx // --- // --- /// AFFX-r2-P1-cre-3 // --- // affx // --- // --- /// AFFX-r2-P1-cre-3 // --- // affx // --- // --- /// AFFX-r2-P1-cre-3 // --- // affx // --- // --- --- AFFX_control No -1.61196839549992 1.14717918536213 -1.57428061127331 -1.89763174458727 -1.98005935124862 Max fold change below threshold 4 1.98005935124862 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773278_at YHL040C.S1 Transporter, member of the ARN family of transporters that specifically recognize siderophore-iron chelates; responsible for uptake of iron bound to ferrirubin, ferrirhodin, and related siderophores 1.97949959679029 508.01676940918 895.326477050781 ARN1 15892 // iron-siderophore transport // inferred from mutant phenotype 5768 // endosome // traceable author statement /// 16023 // cytoplasmic membrane-bound vesicle // inferred from direct assay 15343 // siderophore-iron transporter activity // inferred from mutant phenotype 827.989196777344 418.282073974609 597.75146484375 962.663757324219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL040C /GEN=ARN1 /DB_XREF=GI:6321747 /SEG=NC_001140:-19085,20968 /DEF=Transporter, member of the ARN family of transporters that specifically recognize siderophore-iron chelates; responsible for uptake of iron bound to ferrirubin, ferrirhodin, and related siderophores /NOTE=Arn1p; go_component: cytoplasmic vesicle [goid GO:0016023] [evidence IDA] [pmid 10748025]; go_component: endosome [goid GO:0005768] [evidence TAS] [pmid 12196168]; go_function: siderochrome-iron transporter activity [goid GO:0015343] [evidence IMP] [pmid 10802175]; go_process: iron-siderochrome transport [goid GO:0015892] [evidence IMP] [pmid 10802175] --- --- --- --- --- S0001032 // span:71-90,109-131,136-153,166-188,232-251,291-313,323-340,360-382,397-419,426-445,455-477,494-516,561-583 // numtm:13 S0001032 // ARN1 SGDID:S0001032, Chr VIII from 20968-19085, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016517 // cdna:Genscan chromosome:SGD1:VIII:19085:20968:-1 // ensembl // 11 // --- /// GENEFINDER00000020138 // cdna:GeneFinder chromosome:SGD1:VIII:19085:20968:-1 // ensembl // 11 // --- /// YHL040C // cdna:known chromosome:SGD1:VIII:19085:20968:-1 gene:YHL040C // ensembl // 11 // --- --- No cerevisiae_gene 1.30210017488864 -1.97949959679029 -1.02242005550222 -1.38517301165256 1.16265255763124 Max fold change below threshold 4 1.97949959679029 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778434_at YLR119W.S1 Component of the ESCRT-I complex, which is involved in ubiquitin-dependent sorting of proteins into the endosome; suppressor of rna1-1 mutation; may be involved in RNA export from nucleus 1.97940791436457 148.677871704102 343.471389770508 SRN2 6612 // protein-membrane targeting // inferred from mutant phenotype /// 6612 // protein-membrane targeting // inferred from physical interaction /// 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6623 // protein-vacuolar targeting // inferred from physical interaction /// 43162 // ubiquitin-dependent protein catabolism via the multivesicular body pathway // inferred from curator 813 // ESCRT I complex // traceable author statement /// 813 // ESCRT I complex // inferred from direct assay /// 5768 // endosome // inferred from physical interaction --- 259.370635986328 163.199981689453 134.15576171875 427.572143554688 0.00122069998178631 0.00415039015933871 0.00805663969367743 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR119W /GEN=SRN2 /DB_XREF=GI:6323148 /SEG=NC_001144:+385535,386176 /DEF=Suppressor of rna1-1 mutation /NOTE=Srn2p; go_component: ESCRT I complex [goid GO:0000813] [evidence TAS] [pmid 12900393]; go_component: endosome [goid GO:0005768] [evidence IPI] [pmid 11511343]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-membrane targeting [goid GO:0006612] [evidence IMP,IPI] [pmid 11511343]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP,IPI] [pmid 11511343] --- --- --- --- --- --- S0004109 // SRN2 SGDID:S0004109, Chr XII from 385535-386176, Verified ORF // sgd // 11 // --- /// YLR119W // cdna:known chromosome:SGD1:XII:385535:386176:1 gene:YLR119W // ensembl // 11 // --- --- No cerevisiae_gene -1.97940791436457 -1.58928103607189 1.91260795168217 -1.93335442819134 1.64849865108564 Max fold change below threshold 4 1.97940791436457 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1778334_at YIR021W-A.S1 Identified by expression profiling and mass spectrometry 1.97889048300154 6.88398265838623 7.40161776542664 --- --- --- --- 6.31716394424438 8.26761245727539 5.50035285949707 8.48607158660889 0.533936023712158 0.171387001872063 0.171387001872063 0.124755859375 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR021W-A /GEN=MRS1 /DB_XREF=GI:33438818 /SEG=NC_001141:+398511,398723 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Yir021w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028838 // span:15-37 // numtm:1 S0028838 // YIR021W-A SGDID:S0028838, Chr IX from 398511-398723, Uncharacterized ORF // sgd // 11 // --- /// YIR021W-A // cdna:known chromosome:SGD1:IX:398511:398723:1 gene:YIR021W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.97889048300154 1.30875382216542 1.43178020196628 -1.14850157900997 1.34333565845487 Max fold change below threshold 4 1.97889048300154 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777763_at YMR173W.S1 DNA damage-responsive protein, expression is increased in response to heat-shock stress or treatments that produce DNA lesions; contains multiple repeats of the amino acid sequence NNNDSYGS 1.97879840284469 5020.5556640625 5502.48583984375 DDR48 6281 // DNA repair // inferred from mutant phenotype /// 6281 // DNA repair // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 3924 // GTPase activity // inferred from direct assay /// 16887 // ATPase activity // inferred from direct assay 6262.39306640625 6085.771484375 3955.33984375 4742.57861328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR173W /GEN=DDR48 /DB_XREF=GI:6323826 /SEG=NC_001145:+608688,609980 /DEF=DNA damage-responsive protein, expression is increased in response to heat-shock stress or treatments that produce DNA lesions; contains multiple repeats of the amino acid sequence NNNDSYGS /NOTE=Ddr48p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 8444852]; go_function: GTPase activity [goid GO:0003924] [evidence IDA] [pmid 8444852]; go_process: DNA repair [goid GO:0006281] [evidence IDA,IMP] [pmid 2111448] --- --- --- --- --- --- S0004784 // DDR48 SGDID:S0004784, Chr XIII from 608688-609980, Verified ORF // sgd // 11 // --- /// GENSCAN00000018859 // cdna:Genscan chromosome:SGD1:XIII:608688:609980:1 // ensembl // 11 // --- /// GENEFINDER00000021917 // cdna:GeneFinder chromosome:SGD1:XIII:608896:610080:1 // ensembl // 11 // --- /// YMR173W // cdna:known chromosome:SGD1:XIII:608688:609980:1 gene:YMR173W // ensembl // 11 // --- /// YMR173W-A // cdna:known chromosome:SGD1:XIII:608896:610080:1 gene:YMR173W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.97879840284469 -1.02902205291223 -1.26573171429756 -1.58327560052816 -1.3204616258482 Max fold change below threshold 4 1.97879840284469 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779996_at SPCP31B10.02.S1 --- 1.97827399304807 --- --- --- --- 12.5180397033691 10.1211080551147 19.4626865386963 6.7345871925354 0.0107421996071935 0.303710997104645 0.0805663987994194 0.0561522990465164 P A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCP31B10.02 /DEF=hypothetical protein --- --- --- --- --- --- SPCP31B10.02 // |||hypothetical protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.04103133021223 -1.23682502303126 -1.97827399304807 1.55477111431897 -1.8587686736381 Max fold change below threshold 4 1.97827399304807 Max fold change below threshold PAAAAM No 4 0 PAAM 2 1 1 No No x = 1
1776856_at YNL246W.S1 Protein of unknown function involved in vacuolar protein sorting; detected in the nucleus 1.97803083659615 690.423797607422 462.781158447266 VPS75 6623 // protein-vacuolar targeting // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 440.275543212891 509.968994140625 870.878601074219 485.286773681641 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL246W /GEN=VPS75 /DB_XREF=GI:6324083 /SEG=NC_001146:+185459,186348 /DEF=Vps75p /NOTE=go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 12134085] --- --- --- --- --- --- S0005190 // VPS75 SGDID:S0005190, Chr XIV from 185459-185490,185586-186348, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000019844 // cdna:Genscan chromosome:SGD1:XIV:185578:186348:1 // ensembl // 11 // --- /// GENEFINDER00000020711 // cdna:GeneFinder chromosome:SGD1:XIV:185578:186348:1 // ensembl // 11 // --- /// YNL246W // cdna:known chromosome:SGD1:XIV:185459:186348:1 gene:YNL246W // ensembl // 11 // --- --- No cerevisiae_gene 1.38717617980073 1.15829507680383 1.42893968780232 1.97803083659615 1.10223422845676 Max fold change below threshold 4 1.97803083659615 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774356_at YHL026C.S1 Hypothetical protein 1.9778350329911 254.086624145508 410.035079956055 --- --- --- --- 394.038421630859 250.435516357422 257.737731933594 426.03173828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL026C /GEN=RIM101 /DB_XREF=GI:6321761 /SEG=NC_001140:-53217,54023 /DEF=Hypothetical ORF /NOTE=Yhl026cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001018 // span:155-177,197-217 // numtm:2 S0001018 // YHL026C SGDID:S0001018, Chr VIII from 54023-53217, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016531 // cdna:Genscan chromosome:SGD1:VIII:53217:54023:-1 // ensembl // 11 // --- /// GENEFINDER00000020183 // cdna:GeneFinder chromosome:SGD1:VIII:53217:54023:-1 // ensembl // 11 // --- /// YHL026C // cdna:known chromosome:SGD1:VIII:53217:54023:-1 gene:YHL026C // ensembl // 11 // --- --- No cerevisiae_gene -1.48943397510545 -1.57341269865448 -1.9778350329911 -1.52883483017684 1.08119339357308 Max fold change below threshold 4 1.9778350329911 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778565_at YDR169C-A.S1 Identified by fungal homology and RT-PCR 1.97771424484677 9.70309495925903 5.69795083999634 --- --- --- --- 7.56883811950684 5.84097671508789 13.5652132034302 3.82706356048584 0.274170011281967 0.219482004642487 0.111571997404099 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR169C-A /GEN=STB3 /DB_XREF=GI:33438780 /SEG=NC_001136:-794568,794717 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ydr169c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028538 // YDR169C-A SGDID:S0028538, Chr IV from 794718-794569, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDR169C-A // cdna:known chromosome:SGD1:IV:794569:794718:-1 gene:YDR169C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.01625163493034 -1.29581720467327 -1.08398257542668 1.79224512259935 -1.97771424484677 Max fold change below threshold 4 1.97771424484677 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772001_at YOR336W.S1 Protein required for beta-1,6 glucan biosynthesis; mutations result in aberrant morphology and severe growth defects 1.97741099910227 530.265014648438 1022.79647827148 KRE5 6078 // beta-1,6 glucan biosynthesis // traceable author statement 5783 // endoplasmic reticulum // traceable author statement 3980 // UDP-glucose:glycoprotein glucosyltransferase activity // inferred from direct assay 1020.40997314453 516.033325195313 544.496704101563 1025.18298339844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR336W /GEN=KRE5 /DB_XREF=GI:6324912 /SEG=NC_001147:+949768,953865 /DEF=appears to function early in (1,6)-beta-D-glucan synthesis pathway /NOTE=Kre5p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS] [pmid 10601196]; go_function: UDP-glucose:glycoprotein glucosyltransferase activity [goid GO:0003980] [evidence IDA] [pmid 9611196]; go_process: beta-1,6 glucan biosynthesis [goid GO:0006078] [evidence TAS] [pmid 8550469] --- --- --- --- --- --- S0005863 // KRE5 SGDID:S0005863, Chr XV from 949768-953865, Verified ORF // sgd // 11 // --- /// GENSCAN00000017787 // cdna:Genscan chromosome:SGD1:XV:949768:953865:1 // ensembl // 11 // --- /// GENEFINDER00000022717 // cdna:GeneFinder chromosome:SGD1:XV:949768:953865:1 // ensembl // 11 // --- /// YOR336W // cdna:known chromosome:SGD1:XV:949768:953865:1 gene:YOR336W // ensembl // 11 // --- --- No cerevisiae_gene -1.80030166558947 -1.97741099910227 1.12809990096539 -1.87404251569941 1.00467754175236 Max fold change below threshold 4 1.97741099910227 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772341_at YDR470C.S1 Protein of unknown function; outer membrane component of the mitochondrial fusion machinery; Ugo1p bind directly to Fzo1p and Mgm1p and thereby link these two GTPases during mitochondrial fusion 1.97736063957591 641.432495117188 781.626495361328 UGO1 2 // mitochondrial genome maintenance // inferred from mutant phenotype /// 6810 // transport // inferred from sequence similarity /// 8053 // mitochondrial fusion // inferred from mutant phenotype /// 8053 // mitochondrial fusion // inferred from physical interaction /// 8053 // mitochondrial fusion // inferred from genetic interaction /// 30447 // filamentous growth // inferred from mutant phenotype 5741 // mitochondrial outer membrane // inferred from direct assay 5215 // transporter activity // inferred from sequence similarity 753.444213867188 663.307678222656 619.557312011719 809.808776855469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR470C /GEN=UGO1 /DB_XREF=GI:7839165 /SEG=NC_001136:-1399694,1401202 /DEF=outer membrane protein required for for mitochondrial fusion /NOTE=Ugo1p; go_component: mitochondrial outer membrane [goid GO:0005741] [evidence IDA] [pmid 11257114]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 10930523]; go_process: mitochondrial fusion [goid GO:0008053] [evidence IGI] [pmid 11257114]; go_process: mitochondrial fusion [goid GO:0008053] [evidence IMP,IPI] [pmid 12808034]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 10930523] --- --- --- --- --- S0002878 // span:252-274,294-316,470-489 // numtm:3 S0002878 // UGO1 SGDID:S0002878, Chr IV from 1401204-1399696, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023871 // cdna:GeneFinder chromosome:SGD1:IV:1399696:1401204:-1 // ensembl // 11 // --- /// GENSCAN00000025468 // cdna:Genscan chromosome:SGD1:IV:1399696:1401204:-1 // ensembl // 11 // --- /// YDR470C // cdna:known chromosome:SGD1:IV:1399696:1401204:-1 gene:YDR470C // ensembl // 11 // --- --- No cerevisiae_gene 1.97736063957591 -1.13588948025757 -1.01487182674512 -1.21610091473335 1.07480920544732 Max fold change below threshold 4 1.97736063957591 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779411_at YNL325C.S1 Protein required for efficient mating, member of a family of eukaryotic proteins that contain a domain homologous to Sac1p 1.97731704790622 284.061676025391 352.777038574219 FIG4 753 // cellular morphogenesis during conjugation with cellular fusion // inferred from mutant phenotype 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 19898 // extrinsic to membrane // inferred from direct assay 17120 // polyphosphoinositide phosphatase activity // inferred from direct assay 308.459075927734 295.627990722656 272.495361328125 397.095001220703 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL325C /GEN=FIG4 /DB_XREF=GI:6324005 /SEG=NC_001146:-28738,31377 /DEF=Protein required for efficient mating, member of a family of eukaryotic proteins that contain a domain homologous to Sac1p /NOTE=Fig4p; go_component: extrinsic to membrane [goid GO:0019898] [evidence IDA] [pmid 11950935]; go_function: polyphosphoinositide phosphatase activity [goid GO:0017120] [evidence IDA] [pmid 11950935]; go_process: cellular morphogenesis during conjugation with cellular fusion [goid GO:0000753] [evidence IMP] [pmid 9456310] --- --- --- --- --- --- S0005269 // FIG4 SGDID:S0005269, Chr XIV from 31377-28738, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019783 // cdna:Genscan chromosome:SGD1:XIV:28738:31377:-1 // ensembl // 11 // --- /// GENEFINDER00000020550 // cdna:GeneFinder chromosome:SGD1:XIV:28738:31020:-1 // ensembl // 11 // --- /// YNL325C // cdna:known chromosome:SGD1:XIV:28738:31377:-1 gene:YNL325C // ensembl // 11 // --- --- No cerevisiae_gene -1.97731704790622 -1.04340280896174 1.35886112085901 -1.13197918094578 1.28735068023654 Max fold change below threshold 4 1.97731704790622 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775428_at YNL286W.S1 Protein that binds to U2 snRNA and Prp11p, may be involved in U2 snRNA folding; contains two RNA recognition motifs (RRMs) 1.97721535536901 556.772796630859 328.88069152832 CUS2 398 // nuclear mRNA splicing, via spliceosome // inferred from genetic interaction /// 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 5686 // snRNP U2 // inferred from direct assay 3723 // RNA binding // inferred from sequence similarity /// 3723 // RNA binding // inferred from mutant phenotype 301.577575683594 517.261779785156 596.283813476563 356.183807373047 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL286W /GEN=CUS2 /DB_XREF=GI:6324043 /SEG=NC_001146:+95221,96078 /DEF=Protein that binds to U2 snRNA and Prp11p, may be involved in U2 snRNA folding; contains two RNA recognition motifs (RRMs) /NOTE=Cus2p; go_component: snRNP U2 [goid GO:0005686] [evidence IDA] [pmid 11804584]; go_function: RNA binding [goid GO:0003723] [evidence IMP,ISS] [pmid 9710584]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IGI,IPI] [pmid 9710584] --- --- --- --- --- --- S0005230 // CUS2 SGDID:S0005230, Chr XIV from 95221-96078, Verified ORF // sgd // 10 // --- /// GENSCAN00000019812 // cdna:Genscan chromosome:SGD1:XIV:95221:96078:1 // ensembl // 10 // --- /// GENEFINDER00000020628 // cdna:GeneFinder chromosome:SGD1:XIV:95221:96078:1 // ensembl // 10 // --- /// YNL286W // cdna:known chromosome:SGD1:XIV:95221:96078:1 gene:YNL286W // ensembl // 10 // --- --- No cerevisiae_gene -1.41776547108224 1.71518647768378 1.61038065414071 1.97721535536901 1.18106860752387 Max fold change below threshold 4 1.97721535536901 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771102_at SPCC31H12.03c.S1 --- 1.97697495454094 --- --- --- --- 9.52487850189209 13.8636236190796 18.8304462432861 7.70825242996216 0.0676269978284836 0.0461426004767418 0.018554700538516 0.030273400247097 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC31H12.03c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC31H12.03c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.8873878992855 1.4555171088351 -1.36244210934122 1.97697495454094 -1.23567288285327 Max fold change below threshold 4 1.97697495454094 Max fold change below threshold AAPPPP No 4 0 APPP 1 3 0 No No 2 < x = 3
1778360_at YNL021W.S1 Putative catalytic subunit of a class II histone deacetylase complex that also contains Hda2p and Hda3p; Hda1p interacts with the Hda2p-Hda3p subcomplex to form an active tetramer; deletion increases histone H2B, H3 and H4 acetylation 1.9766956974783 203.204483032227 174.386665344238 HDA1 1308 // loss of chromatin silencing during replicative cell aging // inferred from mutant phenotype /// 6325 // establishment and/or maintenance of chromatin architecture // traceable author statement /// 6355 // regulation of transcription, DNA-dependent // traceable author statement /// 6476 // protein amino acid deacetylation // inferred from direct assay 118 // histone deacetylase complex // inferred from direct assay 4407 // histone deacetylase activity // inferred from direct assay /// 4407 // histone deacetylase activity // inferred from mutant phenotype /// 4407 // histone deacetylase activity // traceable author statement 151.591979980469 150.404907226563 256.004058837891 197.181350708008 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL021W /GEN=HDA1 /DB_XREF=GI:6324307 /SEG=NC_001146:+593225,595345 /DEF=Putative catalytic subunit of a class II histone deacetylase complex that also contains Hda2p and Hda3p; Hda1p interacts with the Hda2p-Hda3p subcomplex to form an active tetramer; deletion increases histone H2B, H3 and H4 acetylation /NOTE=Hda1p; go_component: histone deacetylase complex [goid GO:0000118] [evidence IDA] [pmid 8962081]; go_function: histone deacetylase activity [goid GO:0004407] [evidence TAS] [pmid 11095743]; go_function: histone deacetylase activity [goid GO:0004407] [evidence IDA,IMP] [pmid 8962081]; go_process: establishment and/or maintenance of chromatin architecture [goid GO:0006325] [evidence TAS] [pmid 10384311]; go_process: loss of chromatin silencing during replicative cell aging [goid GO:0001308] [evidence IMP] [pmid 10512855]; go_process: protein amino acid deacetylation [goid GO:0006476] [evidence IDA] [pmid 10384304]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence TAS] [pmid 10384311] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 2.79999995231628 --- S0004966 // HDA1 SGDID:S0004966, Chr XIV from 593226-595346, Verified ORF // sgd // 11 // --- /// GENSCAN00000020020 // cdna:Genscan chromosome:SGD1:XIV:593226:595346:1 // ensembl // 11 // --- /// GENEFINDER00000020451 // cdna:GeneFinder chromosome:SGD1:XIV:593226:595346:1 // ensembl // 11 // --- /// YNL021W // cdna:known chromosome:SGD1:XIV:593226:595346:1 gene:YNL021W // ensembl // 11 // --- --- No cerevisiae_gene 1.38834072222582 -1.00789251345449 1.9766956974783 1.68877046708457 1.30073735255264 Max fold change below threshold 4 1.9766956974783 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774690_at YJL090C.S1 Essential BRCT repeat protein, required on the prereplicative complex at replication origins for loading DNA polymerases to initiate DNA synthesis, also required for S/M checkpoint control 1.97629923832012 251.308258056641 426.685806274414 DPB11 76 // DNA replication checkpoint // inferred from mutant phenotype /// 6270 // DNA replication initiation // traceable author statement /// 6272 // leading strand elongation // traceable author statement /// 6273 // lagging strand elongation // traceable author statement /// 6289 // nucleotide-excision repair // traceable author statement /// 6298 // mismatch repair // non-traceable author statement 5657 // replication fork // traceable author statement /// 5657 // replication fork // inferred from direct assay 5515 // protein binding // inferred from physical interaction 454.556182861328 259.300231933594 243.316284179688 398.8154296875 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL090C /GEN=DPB11 /DB_XREF=GI:6322371 /SEG=NC_001142:-262673,264967 /DEF=Essential BRCT repeat protein, required on the prereplicative complex at replication origins for loading DNA polymerases to initiate DNA synthesis, also required for S/M checkpoint control /NOTE=Dpb11p; go_component: replication fork [goid GO:0005657] [evidence TAS] [pmid 9745046]; go_function: epsilon DNA polymerase activity [goid GO:0003893] [evidence TAS] [pmid 9745046]; go_process: DNA replication initiation [goid GO:0006270] [evidence TAS] [pmid 12730134]; go_process: lagging strand elongation [goid GO:0006273] [evidence TAS] [pmid 9745046]; go_process: leading strand elongation [goid GO:0006272] [evidence TAS] [pmid 9745046]; go_process: mismatch repair [goid GO:0006298] [evidence NAS] [pmid 10072354]; go_process: nucleotide-excision repair [goid GO:0006289] [evidence TAS] [pmid 9745046] --- --- --- --- --- --- S0003626 // DPB11 SGDID:S0003626, Chr X from 264967-262673, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024069 // cdna:Genscan chromosome:SGD1:X:262673:264967:-1 // ensembl // 11 // --- /// GENEFINDER00000024347 // cdna:GeneFinder chromosome:SGD1:X:262673:264682:-1 // ensembl // 11 // --- /// YJL090C // cdna:known chromosome:SGD1:X:262673:264967:-1 gene:YJL090C // ensembl // 11 // --- --- No cerevisiae_gene -1.55673651422597 -1.75301109247654 -1.97629923832012 -1.8681700010084 -1.13976578894529 Max fold change below threshold 4 1.97629923832012 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773171_at YPL173W.S1 Mitochondrial ribosomal protein of the large subunit 1.9762610793225 428.054824829102 659.456848144531 MRPL40 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement /// 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // traceable author statement 630.232299804688 318.901336669922 537.208312988281 688.681396484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL173W /GEN=MRPL40 /DB_XREF=GI:6325084 /SEG=NC_001148:+223142,224035 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl40p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- scop // a.2.7.Seryl-tRNA synthetase (SerRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) // 1.60000002384186 --- S0006094 // MRPL40 SGDID:S0006094, Chr XVI from 223142-224035, Verified ORF // sgd // 11 // --- /// GENSCAN00000017055 // cdna:Genscan chromosome:SGD1:XVI:223142:224035:1 // ensembl // 11 // --- /// GENEFINDER00000020873 // cdna:GeneFinder chromosome:SGD1:XVI:223142:224035:1 // ensembl // 11 // --- /// YPL173W // cdna:known chromosome:SGD1:XVI:223142:224035:1 gene:YPL173W // ensembl // 11 // --- --- No cerevisiae_gene -1.16610648553554 -1.9762610793225 1.52994278562108 -1.17316185279962 1.09274214713813 Max fold change below threshold 4 1.9762610793225 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779140_at YER099C.S1 5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, involved in nucleotide, histidine, and tryptophan biosynthesis; one of a five related enzymes, which are active as heteromultimeric complexes 1.976237981944 1572.09143066406 974.477478027344 PRS2 105 // histidine biosynthesis // traceable author statement /// 162 // tryptophan biosynthesis // traceable author statement /// 6166 // purine ribonucleoside salvage // traceable author statement /// 6189 // 'de novo' IMP biosynthesis // traceable author statement /// 6207 // 'de novo' pyrimidine base biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 4749 // ribose-phosphate diphosphokinase activity // traceable author statement 902.966186523438 1359.70678710938 1784.47607421875 1045.98876953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER099C /GEN=PRS2 /DB_XREF=GI:6320946 /SEG=NC_001137:-358101,359057 /DEF=5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, involved in nucleotide, histidine, and tryptophan biosynthesis; one of a five related enzymes, which are active as heteromultimeric complexes /NOTE=Prs2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: ribose-phosphate diphosphokinase activity [goid GO:0004749] [evidence TAS] [pmid 10212224]; go_process: 'de novo' IMP biosynthesis [goid GO:0006189] [evidence TAS] [pmid 10212224]; go_process: 'de novo' pyrimidine base biosynthesis [goid GO:0006207] [evidence TAS] [pmid 10212224]; go_process: histidine biosynthesis [goid GO:0000105] [evidence TAS] [pmid 10212224]; go_process: purine ribonucleoside salvage [goid GO:0006166] [evidence TAS] [pmid 10212224]; go_process: tryptophan biosynthesis [goid GO:0000162] [evidence TAS] [pmid 10212224] --- --- --- --- --- --- S0000901 // PRS2 SGDID:S0000901, Chr V from 359057-358101, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016885 // cdna:Genscan chromosome:SGD1:V:358101:359057:-1 // ensembl // 11 // --- /// GENEFINDER00000019707 // cdna:GeneFinder chromosome:SGD1:V:358101:359057:-1 // ensembl // 11 // --- /// YER099C // cdna:known chromosome:SGD1:V:358101:359057:-1 gene:YER099C // ensembl // 11 // --- --- No cerevisiae_gene 1.30371338818096 1.50582248527429 1.41847932547611 1.976237981944 1.15839195879358 Max fold change below threshold 4 1.976237981944 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772958_at YGR052W.S1 The authentic, non-tagged protein was localized to the mitochondria 1.9758265746914 6176.57055664063 3617.60266113281 --- --- 5739 // mitochondrion // inferred from sequence similarity /// 5739 // mitochondrion // inferred from direct assay 16301 // kinase activity // inferred from sequence similarity 3647.73388671875 7207.28955078125 5145.8515625 3587.47143554688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR052W /GEN=SCM4 /DB_XREF=GI:6321489 /SEG=NC_001139:+593598,594707 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ygr052wp --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 5.0E-47 /// hanks // 1.3.3 // AGC group; AGC III RAC(Akt); DmRAC // 1.0E-51 --- --- S0003284 // FMP48 SGDID:S0003284, Chr VII from 593600-594709, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019381 // cdna:Genscan chromosome:SGD1:VII:593600:594709:1 // ensembl // 11 // --- /// GENEFINDER00000021382 // cdna:GeneFinder chromosome:SGD1:VII:593726:594709:1 // ensembl // 11 // --- /// YGR052W // cdna:known chromosome:SGD1:VII:593600:594709:1 gene:YGR052W // ensembl // 11 // --- --- No cerevisiae_gene 1.11392942616476 1.9758265746914 -1.01245024101492 1.41069818202359 -1.01679802954659 Max fold change below threshold 4 1.9758265746914 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778658_at YKL064W.S1 Putative magnesium transporter; has similarity to Alr1p and Alr2p, which mediate influx of Mg2+ and other divalent cations 1.97573359258556 3241.33813476563 1758.33831787109 MNR2 15693 // magnesium ion transport // inferred from sequence similarity 16020 // membrane // inferred from sequence similarity 15095 // magnesium ion transporter activity // inferred from sequence similarity 1687.29467773438 3149.03149414063 3333.64477539063 1829.38195800781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL064W /GEN=MNR2 /DB_XREF=GI:6322786 /SEG=NC_001143:+317409,320318 /DEF=Product of gene unknown /NOTE=Mnr2p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 9430719]; go_function: magnesium ion transporter activity [goid GO:0015095] [evidence ISS] [pmid 9430719]; go_process: magnesium ion transport [goid GO:0015693] [evidence ISS] [pmid 9430719] --- --- --- --- --- S0001547 // span:912-934,941-963 // numtm:2 S0001547 // MNR2 SGDID:S0001547, Chr XI from 317409-320318, Verified ORF // sgd // 10 // --- /// GENSCAN00000018370 // cdna:Genscan chromosome:SGD1:XI:317409:320318:1 // ensembl // 10 // --- /// GENEFINDER00000023176 // cdna:GeneFinder chromosome:SGD1:XI:317409:320318:1 // ensembl // 10 // --- /// YKL064W // cdna:known chromosome:SGD1:XI:317409:320318:1 gene:YKL064W // ensembl // 10 // --- --- No cerevisiae_gene -1.19581603785827 1.86631981698005 1.21550032346239 1.97573359258556 1.08421011584309 Max fold change below threshold 4 1.97573359258556 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769491_at SPBC17G9.06c.S1 --- 1.97551296106048 --- --- --- --- 8.82713031768799 10.1974229812622 17.4381103515625 6.59114837646484 0.0439453125 0.0952147990465164 0.00415039015933871 0.0952147990465164 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17G9.06c /DEF=acetyltransferase (predicted) --- --- --- --- --- --- SPBC17G9.06c // |||acetyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.59848663958172 1.15523648278177 1.33490317599002 1.97551296106048 -1.33924011621514 Max fold change below threshold 4 1.97551296106048 Max fold change below threshold PAAPPA No 3 0 PAPA 2 2 0 No No 1 < x = 2
1773987_at YJL145W.S1 Putative phosphatidylinositol transfer protein (PITP), exhibits phosphatidylinositol- but not phosphatidylcholine-transfer activity, mainly localized to cytosol and microsomes, similar to Sec14p; may be PITP regulator rather than actual PITP 1.97500172753756 205.772895812988 384.005065917969 SFH5 15914 // phospholipid transport // inferred from direct assay 5792 // microsome // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 8526 // phosphatidylinositol transporter activity // inferred from direct assay 384.216461181641 194.539810180664 217.005981445313 383.793670654297 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL145W /GEN=SFH5 /DB_XREF=GI:6322316 /SEG=NC_001142:+145078,145962 /DEF=putative phosphatidylinositol transfer protein /NOTE=Sfh5p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 12869188]; go_component: microsome [goid GO:0005792] [evidence IDA] [pmid 12869188]; go_function: phosphatidylinositol transporter activity [goid GO:0008526] [evidence IDA] [pmid 10848624]; go_process: phospholipid transport [goid GO:0015914] [evidence IDA] [pmid 10848624] --- --- --- --- --- --- S0003681 // SFH5 SGDID:S0003681, Chr X from 145078-145962, Verified ORF // sgd // 10 // --- /// GENSCAN00000024028 // cdna:Genscan chromosome:SGD1:X:145078:145962:1 // ensembl // 10 // --- /// GENEFINDER00000024367 // cdna:GeneFinder chromosome:SGD1:X:145078:145962:1 // ensembl // 10 // --- /// YJL145W // cdna:known chromosome:SGD1:X:145078:145962:1 gene:YJL145W // ensembl // 10 // --- --- No cerevisiae_gene 1.28036422543121 -1.97500172753756 -1.58859184574489 -1.77053396695642 -1.00110160891039 Max fold change below threshold 4 1.97500172753756 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771502_at YPR043W.S1 Protein component of the large (60S) ribosomal subunit, identical to Rpl43Bp and has similarity to rat L37a ribosomal protein; null mutation confers a dominant lethal phenotype 1.97474533296026 2978.45141601563 4892.1005859375 RPL43A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 5574.05859375 3134.23071289063 2822.67211914063 4210.142578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR043W /GEN=RPL43A /DB_XREF=GI:6325300 /SEG=NC_001148:+654161,654842 /DEF=Protein component of the large (60S) ribosomal subunit, identical to Rpl43Bp and has similarity to rat L37a ribosomal protein; null mutation confers a dominant lethal phenotype /NOTE=Rpl43ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0006247 // RPL43A SGDID:S0006247, Chr XVI from 654163-654164,654568-654844, intron sequence removed, Verified ORF // sgd // 11 // --- /// YPR043W // cdna:known chromosome:SGD1:XVI:654163:654844:1 gene:YPR043W // ensembl // 11 // --- YPR044C // ensembl // 11 // Negative Strand Matching Probes No cerevisiae_gene -1.12443308859597 -1.77844552758185 -1.62327008024369 -1.97474533296026 -1.32395957864031 Max fold change below threshold 4 1.97474533296026 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771787_at YBR165W.S1 Ubiquitin-conjugating enzyme suppressor that functions as a general positive regulator of Cdc34p activity; nuclear protein that may represent a link between nucleocytoplasmic transport and ubiquitin ligase activity 1.97470389578538 881.778717041016 906.921325683594 UBS1 6611 // protein-nucleus export // inferred from genetic interaction /// 16567 // protein ubiquitination // inferred from genetic interaction 5634 // nucleus // inferred from direct assay --- 857.577087402344 821.626525878906 941.930908203125 956.265563964844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR165W /GEN=UBS1 /DB_XREF=GI:6319642 /SEG=NC_001134:+568809,569642 /DEF=Ubiquitin-conjugating enzyme suppressor that functions as a general positive regulator of Cdc34p activity; nuclear protein that may represent a link between nucleocytoplasmic transport and ubiquitin ligase activity /NOTE=Ubs1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10991951]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein ubiquitination [goid GO:0016567] [evidence IGI] [pmid 10991951]; go_process: protein-nucleus export [goid GO:0006611] [evidence IGI] [pmid 10991951] --- --- --- --- --- --- S0000369 // UBS1 SGDID:S0000369, Chr II from 568847-569680, Verified ORF // sgd // 11 // --- /// YBR165W // cdna:known chromosome:SGD1:II:568847:569680:1 gene:YBR165W // ensembl // 11 // --- --- No cerevisiae_gene 1.97470389578538 -1.04375535646805 1.19505431213584 1.09836296006496 1.11507825711789 Max fold change below threshold 4 1.97470389578538 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775988_at YLR254C.S1 homolog of nuclear distribution factor NudE, NUDEL 1.97446118462355 1945.01141357422 1174.53686523438 NDL1 30473 // nuclear migration, microtubule-mediated // inferred from mutant phenotype /// 30473 // nuclear migration, microtubule-mediated // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5881 // cytoplasmic microtubule // inferred from direct assay --- 1108.53015136719 2188.74975585938 1701.27307128906 1240.54357910156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR254C /GEN=SSP120 /DB_XREF=GI:6323283 /SEG=NC_001144:-644406,644975 /DEF=Hypothetical ORF /NOTE=Ylr254cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004244 // YLR254C SGDID:S0004244, Chr XII from 644975-644406, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000018016 // cdna:Genscan chromosome:SGD1:XII:644406:644975:-1 // ensembl // 10 // --- /// YLR254C // cdna:known chromosome:SGD1:XII:644406:644975:-1 gene:YLR254C // ensembl // 10 // --- --- No cerevisiae_gene 1.2364575839501 1.97446118462355 1.07059128105812 1.53471068801406 1.11908871181497 Max fold change below threshold 4 1.97446118462355 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778882_at YOL097W-A.S1 Identified by expression profiling and mass spectrometry 1.97346762295929 56.9134635925293 38.7921524047852 --- --- --- --- 31.3645553588867 51.9299926757813 61.8969345092773 46.2197494506836 0.00292969006113708 0.00805663969367743 0.00585938012227416 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL097W-A /GEN=PKH2 /DB_XREF=GI:33438875 /SEG=NC_001147:+136219,136404 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Yol097w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028854 // YOL097W-A SGDID:S0028854, Chr XV from 136219-136404, Uncharacterized ORF // sgd // 11 // --- /// YOL097W-A // cdna:known chromosome:SGD1:XV:136219:136404:1 gene:YOL097W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.68204105312192 1.65569038303193 -1.22300605521149 1.97346762295929 1.47362999162007 Max fold change below threshold 4 1.97346762295929 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1772737_s_at YBL111C.S1 Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// similar to other subtelomerically-encoded proteins /// Hypothetical protein /// subtelomerically-encoded DNA helicase /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Protein of unknown function, potential Cdc28p substrate /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein 1.97274363500803 308.441421508789 376.343780517578 YRF1-5 /// YRF1-4 /// YRF1-7 /// YRF1-6 /// YRF1-3 /// YRF1-2 /// YRF1-1 722 // telomerase-independent telomere maintenance // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay /// 5634 // nucleus // inferred from curator 4386 // helicase activity // inferred from sequence similarity /// 3678 // DNA helicase activity // inferred from direct assay 353.439788818359 228.694091796875 388.188751220703 399.247772216797 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL111C /DB_XREF=GI:6319357 /SEG=NC_001134:-2907,5009 /DEF=Hypothetical ORF /NOTE=Ybl111cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 0.239999994635582 /// scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 1.89999997615814 /// scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 2.40000009536743 /// scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 5.0 /// scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 6.19999980926514 /// scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 7.30000019073486 --- S0002151 // YBL111C SGDID:S0002151, Chr II from 5009-4216,4116-2907, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0002953 // YRF1-1 SGDID:S0002953, Chr IV from 1526304-1531694, Verified ORF // sgd // 11 // --- /// S0006409 // YEL077C SGDID:S0006409, Chr V from 4097-264, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0000992 // YRF1-2 SGDID:S0000992, Chr V from 571475-576520, Verified ORF // sgd // 11 // --- /// S0001828 // YFL066C SGDID:S0001828, Chr VI from 2615-1437, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0003528 // YRF1-3 SGDID:S0003528, Chr VII from 1084870-1084888,1085037-1090597, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0001042 // YHL050C SGDID:S0001042, Chr VIII from 3310-2670,1897-445, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0001261 // YHR218W SGDID:S0001261, Chr VIII from 558013-558614,558714-559923, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0001439 // YIL177C SGDID:S0001439, Chr IX from 6147-4987,4598-483, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0003760 // YJL225C SGDID:S0003760, Chr X from 6130-4970,4581-466, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0003989 // YLL066C SGDID:S0003989, Chr XII from 9836-9550,9450-6120, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0003990 // YLL067C SGDID:S0003990, Chr XII from 4301-4015,3915-585, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0004458 // YRF1-4 SGDID:S0004458, Chr XII from 1067084-1071232, Verified ORF // sgd // 11 // --- /// S0004459 // YRF1-5 SGDID:S0004459, Chr XII from 1072505-1077895, Verified ORF // sgd // 11 // --- /// S0004602 // YML133C SGDID:S0004602, Chr XIII from 4684-3891,3791-461, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0005283 // YRF1-6 SGDID:S0005283, Chr XIV from 6098-6080,5931-371, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0007526 // YOR396W SGDID:S0007526, Chr XV from 1087185-1090859, Uncharacterized ORF // sgd // 11 // --- /// S0006204 // YRF1-7 SGDID:S0006204, Chr XVI from 6007-5989,5840-280, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0006408 // YPR204W SGDID:S0006408, Chr XVI from 944599-947697, Uncharacterized ORF // sgd // 11 // --- /// AB016599 // Saccharomyces cerevisiae mRNA for Y'-helicase protein 1, complete cds. // gb // 11 // --- /// GENSCAN00000021052 // cdna:Genscan chromosome:SGD1:II:2907:3779:-1 // ensembl // 11 // --- /// GENSCAN00000025522 // cdna:Genscan chromosome:SGD1:IV:1526304:1531694:1 // ensembl // 11 // --- /// GENEFINDER00000023783 // cdna:GeneFinder chromosome:SGD1:IV:1526496:1531694:1 // ensembl // 11 // --- /// GENSCAN00000016341 // cdna:Genscan chromosome:SGD1:IX:483:4712:-1 // ensembl // 11 // --- /// GENEFINDER00000019113 // cdna:GeneFinder chromosome:SGD1:IX:483:4997:-1 // ensembl // 11 // --- /// GENSCAN00000016744 // cdna:Genscan chromosome:SGD1:V:264:4097:-1 // ensembl // 11 // --- /// GENEFINDER00000019735 // cdna:GeneFinder chromosome:SGD1:V:264:4407:-1 // ensembl // 11 // --- /// GENSCAN00000016965 // cdna:Genscan chromosome:SGD1:V:571475:576520:1 // ensembl // 11 // --- /// GENEFINDER00000019661 // cdna:GeneFinder chromosome:SGD1:V:571640:576520:1 // ensembl // 11 // --- /// GENEFINDER00000018544 // cdna:GeneFinder chromosome:SGD1:VI:84:2615:-1 // ensembl // 11 // --- /// GENSCAN00000023187 // cdna:Genscan chromosome:SGD1:VI:1437:2615:-1 // ensembl // 11 // --- /// GENSCAN00000019569 // cdna:Genscan chromosome:SGD1:VII:1085210:1090597:1 // ensembl // 11 // --- /// GENEFINDER00000021702 // cdna:GeneFinder chromosome:SGD1:VII:1085402:1090597:1 // ensembl // 11 // --- /// GENEFINDER00000020212 // cdna:GeneFinder chromosome:SGD1:VIII:445:4348:-1 // ensembl // 11 // --- /// GENSCAN00000016511 // cdna:Genscan chromosome:SGD1:VIII:2243:3310:-1 // ensembl // 11 // --- /// GENSCAN00000016742 // cdna:Genscan chromosome:SGD1:VIII:559051:559923:1 // ensembl // 11 // --- /// GENSCAN00000023968 // cdna:Genscan chromosome:SGD1:X:466:4695:-1 // ensembl // 11 // --- /// GENEFINDER00000024515 // cdna:GeneFinder chromosome:SGD1:X:466:4980:-1 // ensembl // 11 // --- /// GENEFINDER00000024818 // cdna:GeneFinder chromosome:SGD1:XII:455:4616:-1 // ensembl // 11 // --- /// GENSCAN00000017634 // cdna:Genscan chromosome:SGD1:XII:585:3578:-1 // ensembl // 11 // --- /// GENSCAN00000017638 // cdna:Genscan chromosome:SGD1:XII:6120:9113:-1 // ensembl // 11 // --- /// GENEFINDER00000024830 // cdna:GeneFinder chromosome:SGD1:XII:6120:9113:-1 // ensembl // 11 // --- /// GENSCAN00000018171 // cdna:Genscan chromosome:SGD1:XII:1067084:1071232:1 // ensembl // 11 // --- /// GENEFINDER00000024577 // cdna:GeneFinder chromosome:SGD1:XII:1067276:1071232:1 // ensembl // 11 // --- /// GENSCAN00000018172 // cdna:Genscan chromosome:SGD1:XII:1072505:1077895:1 // ensembl // 11 // --- /// GENEFINDER00000024799 // cdna:GeneFinder chromosome:SGD1:XII:1072697:1077895:1 // ensembl // 11 // --- /// GENSCAN00000018602 // cdna:Genscan chromosome:SGD1:XIII:461:3454:-1 // ensembl // 11 // --- /// GENEFINDER00000021916 // cdna:GeneFinder chromosome:SGD1:XIII:461:3454:-1 // ensembl // 11 // --- /// GENSCAN00000019774 // cdna:Genscan chromosome:SGD1:XIV:371:5758:-1 // ensembl // 11 // --- /// GENEFINDER00000020706 // cdna:GeneFinder chromosome:SGD1:XIV:371:5566:-1 // ensembl // 11 // --- /// GENSCAN00000017839 // cdna:Genscan chromosome:SGD1:XV:1085469:1090859:1 // ensembl // 11 // --- /// GENEFINDER00000022814 // cdna:GeneFinder chromosome:SGD1:XV:1085661:1090859:1 // ensembl // 11 // --- /// GENSCAN00000016966 // cdna:Genscan chromosome:SGD1:XVI:280:5667:-1 // ensembl // 11 // --- /// GENEFINDER00000020788 // cdna:GeneFinder chromosome:SGD1:XVI:280:5475:-1 // ensembl // 11 // --- /// GENSCAN00000017339 // cdna:Genscan chromosome:SGD1:XVI:944599:947697:1 // ensembl // 11 // --- /// GENEFINDER00000021044 // cdna:GeneFinder chromosome:SGD1:XVI:944599:947697:1 // ensembl // 11 // --- /// YBL111C // cdna:known chromosome:SGD1:II:2907:5009:-1 gene:YBL111C // ensembl // 11 // --- /// YDR545W // cdna:known chromosome:SGD1:IV:1526304:1531694:1 gene:YDR545W // ensembl // 11 // --- /// YIL177C // cdna:known chromosome:SGD1:IX:483:6147:-1 gene:YIL177C // ensembl // 11 // --- /// YEL077C // cdna:known chromosome:SGD1:V:264:4097:-1 gene:YEL077C // ensembl // 11 // --- /// YER190W // cdna:known chromosome:SGD1:V:571475:576520:1 gene:YER190W // ensembl // 11 // --- /// YFL066C // cdna:known chromosome:SGD1:VI:1437:2615:-1 gene:YFL066C // ensembl // 11 // --- /// YGR296W // cdna:known chromosome:SGD1:VII:1084870:1090597:1 gene:YGR296W // ensembl // 11 // --- /// YHL050C // cdna:known chromosome:SGD1:VIII:445:3310:-1 gene:YHL050C // ensembl // 11 // --- /// YHR218W // cdna:known chromosome:SGD1:VIII:558013:559923:1 gene:YHR218W // ensembl // 11 // --- /// YJL225C // cdna:known chromosome:SGD1:X:466:6130:-1 gene:YJL225C // ensembl // 11 // --- /// YLL067C // cdna:known chromosome:SGD1:XII:585:4301:-1 gene:YLL067C // ensembl // 11 // --- /// YLL066C // cdna:known chromosome:SGD1:XII:6120:9836:-1 gene:YLL066C // ensembl // 11 // --- /// YLR466W // cdna:known chromosome:SGD1:XII:1067084:1071232:1 gene:YLR466W // ensembl // 11 // --- /// YLR467W // cdna:known chromosome:SGD1:XII:1072505:1077895:1 gene:YLR467W // ensembl // 11 // --- /// YML133C // cdna:known chromosome:SGD1:XIII:461:4684:-1 gene:YML133C // ensembl // 11 // --- /// YNL339C // cdna:known chromosome:SGD1:XIV:371:6098:-1 gene:YNL339C // ensembl // 11 // --- /// YOR396W // cdna:known chromosome:SGD1:XV:1087185:1090859:1 gene:YOR396W // ensembl // 11 // --- /// YPL283C // cdna:known chromosome:SGD1:XVI:280:6007:-1 gene:YPL283C // ensembl // 11 // --- /// YPR204W // cdna:known chromosome:SGD1:XVI:944599:947697:1 gene:YPR204W // ensembl // 11 // --- --- No cerevisiae_gene 1.79146994154046 -1.54546969727702 1.97274363500803 1.0983164983165 1.12960618710074 Max fold change below threshold 4 1.97274363500803 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777616_at YML018C.S1 Hypothetical protein 1.97252059952945 446.411697387695 913.805328369141 --- --- 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay --- 871.028930664063 441.581665039063 451.241729736328 956.581726074219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML018C /GEN=OST6 /DB_XREF=GI:6323623 /SEG=NC_001145:-234771,235952 /DEF=Hypothetical ORF /NOTE=Yml018cp; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 0.129999995231628 S0004480 // span:13-35,50-72,133-155,222-244,257-279,294-313,320-342,347-366 // numtm:8 S0004480 // YML018C SGDID:S0004480, Chr XIII from 235952-234771, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018701 // cdna:Genscan chromosome:SGD1:XIII:234771:235952:-1 // ensembl // 11 // --- /// GENEFINDER00000021778 // cdna:GeneFinder chromosome:SGD1:XIII:234771:235952:-1 // ensembl // 11 // --- /// YML018C // cdna:known chromosome:SGD1:XIII:234771:235952:-1 gene:YML018C // ensembl // 11 // --- --- No cerevisiae_gene 1.03687059673302 -1.97252059952945 -1.35265579873956 -1.93029339545575 1.09822038327123 Max fold change below threshold 4 1.97252059952945 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772166_at YDR323C.S1 Multivalent adaptor protein that facilitates vesicle-mediated vacuolar protein sorting by ensuring high-fidelity vesicle docking and fusion, which are essential for targeting of vesicles to the endosome; required for vacuole inheritance 1.97221095935604 175.739883422852 342.326675415039 PEP7 6896 // Golgi to vacuole transport // inferred from genetic interaction /// 6896 // Golgi to vacuole transport // inferred from physical interaction /// 6904 // vesicle docking during exocytosis // inferred from mutant phenotype /// 6906 // vesicle fusion // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 10009 // external side of endosome membrane // inferred from direct assay --- 343.342559814453 174.090179443359 177.389587402344 341.310791015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR323C /GEN=PEP7 /DB_XREF=GI:6320530 /SEG=NC_001136:-1112473,1114020 /DEF=vacuolar segregation protein required for vacuole inheritance and vacuole protein sorting /NOTE=Pep7p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9168472]; go_component: external side of endosome membrane [goid GO:0010009] [evidence IDA] [pmid 9168472]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi to vacuole transport [goid GO:0006896] [evidence IGI,IPI] [pmid 10021387]; go_process: vesicle docking during exocytosis [goid GO:0006904] [evidence IMP] [pmid 9168472]; go_process: vesicle fusion [goid GO:0006906] [evidence IMP] [pmid 9168472] --- --- --- --- scop // a.2.9.C-terminal UvrC-binding domain of UvrB // All alpha proteins; Long alpha-hairpin; C-terminal UvrC-binding domain of UvrB; C-terminal UvrC-binding domain of UvrB // 5.90000009536743 --- S0002731 // PEP7 SGDID:S0002731, Chr IV from 1114022-1112475, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023557 // cdna:GeneFinder chromosome:SGD1:IV:1112475:1113431:-1 // ensembl // 11 // --- /// GENSCAN00000025353 // cdna:Genscan chromosome:SGD1:IV:1112475:1114022:-1 // ensembl // 11 // --- /// YDR323C // cdna:known chromosome:SGD1:IV:1112475:1114022:-1 gene:YDR323C // ensembl // 11 // --- --- No cerevisiae_gene -1.49936364014363 -1.97221095935604 1.07216277034329 -1.93552826207158 -1.00595284079001 Max fold change below threshold 4 1.97221095935604 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771287_at YGL012W.S1 C-24(28) sterol reductase, catalyzes the final step in ergosterol biosynthesis; mutants are viable, but lack ergosterol 1.97182570813769 542.207061767578 947.116241455078 ERG4 6696 // ergosterol biosynthesis // traceable author statement 5783 // endoplasmic reticulum // inferred from direct assay 246 // delta24(24-1) sterol reductase activity // traceable author statement 889.007080078125 450.854797363281 633.559326171875 1005.22540283203 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL012W /GEN=ERG4 /DB_XREF=GI:6321426 /SEG=NC_001139:+472858,474279 /DEF=C-24(28) sterol reductase, catalyzes the final step in ergosterol biosynthesis; mutants are viable, but lack ergosterol /NOTE=Erg4p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 10722850]; go_function: delta24(24-1) sterol reductase activity [goid GO:0000246] [evidence TAS] [pmid 10722850]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence TAS] [pmid 10722850] --- --- --- --- --- S0002980 // span:40-62,102-124,144-163,175-197,298-320,327-346,424-443 // numtm:7 S0002980 // ERG4 SGDID:S0002980, Chr VII from 472860-474281, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021381 // cdna:GeneFinder chromosome:SGD1:VII:472860:474368:1 // ensembl // 11 // --- /// YGL012W // cdna:known chromosome:SGD1:VII:472860:474281:1 gene:YGL012W // ensembl // 11 // --- --- No cerevisiae_gene 1.65550054883144 -1.97182570813769 -1.22013499020365 -1.40319468651772 1.13072823080745 Max fold change below threshold 4 1.97182570813769 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773306_at YNL293W.S1 GTPase-activating protein for Sec4p and several other Rab GTPases, regulates exocytosis via its action on Sec4p, also required for proper actin organization; similar to Msb4p; both Msb3p and Msb4p localize to sites of polarized growth 1.97181535503355 629.752334594727 884.598297119141 MSB3 6887 // exocytosis // traceable author statement /// 7015 // actin filament organization // traceable author statement 131 // incipient bud site // inferred from direct assay /// 5934 // bud tip // inferred from direct assay 5097 // Rab GTPase activator activity // inferred from sequence similarity /// 5097 // Rab GTPase activator activity // inferred from direct assay 859.741943359375 511.878570556641 747.626098632813 909.454650878906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL293W /GEN=MSB3 /DB_XREF=GI:6324036 /SEG=NC_001146:+80638,82539 /DEF=Multicopy Suppressor of Bud Emergence /NOTE=Msb3p; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 10679030]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 10679030]; go_function: Rab GTPase activator activity [goid GO:0005097] [evidence IDA,ISS] [pmid 10559187]; go_process: actin filament organization [goid GO:0007015] [evidence TAS] [pmid 10679030]; go_process: exocytosis [goid GO:0006887] [evidence TAS] [pmid 10559187] --- --- --- --- --- --- S0005237 // MSB3 SGDID:S0005237, Chr XIV from 80638-82539, Verified ORF // sgd // 11 // --- /// GENSCAN00000019805 // cdna:Genscan chromosome:SGD1:XIV:80758:82539:1 // ensembl // 11 // --- /// GENEFINDER00000020551 // cdna:GeneFinder chromosome:SGD1:XIV:80758:82539:1 // ensembl // 11 // --- /// YNL293W // cdna:known chromosome:SGD1:XIV:80638:82539:1 gene:YNL293W // ensembl // 11 // --- --- No cerevisiae_gene -1.97181535503355 -1.67958182430738 1.07367486269357 -1.14996245440279 1.05782282451555 Max fold change below threshold 4 1.97181535503355 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773570_at SPBC1734.08.S1 --- 1.97180493327321 --- --- --- --- 0.838707983493805 1.65376853942871 1.50757575035095 0.62102222442627 0.962401986122131 0.932372987270355 0.753906011581421 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1734.08 /DEF=STAM like protein --- --- --- --- --- --- SPBC1734.08 // |||STAM like protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.17147546564131 1.97180493327321 -1.57627397748258 1.79749779425116 -1.35052813008205 Max fold change below threshold 0 1.97180493327321 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771404_at YDL025C.S1 Protein of unknown function, potentially phosphorylated by Cdc28p 1.97167371452983 2700.31115722656 1530.38818359375 --- --- --- 4672 // protein kinase activity // inferred from sequence similarity 1457.00305175781 2872.73461914063 2527.8876953125 1603.77331542969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL025C /GEN=MPS1 /DB_XREF=GI:6320179 /SEG=NC_001136:-405341,407203 /DEF=Protein of unknown function, potentially phosphorylated by Cdc28p /NOTE=Ydl025cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 9020587]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-51 /// hanks // 2.2.12 // CaMK Group; CaMK II KIN1/SNF1/Nim1; YCL24 // 3.0E-60 --- --- S0002183 // YDL025C SGDID:S0002183, Chr IV from 407203-405341, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023481 // cdna:GeneFinder chromosome:SGD1:IV:405341:407203:-1 // ensembl // 11 // --- /// GENSCAN00000025081 // cdna:Genscan chromosome:SGD1:IV:405341:407203:-1 // ensembl // 11 // --- /// YDL025C // cdna:known chromosome:SGD1:IV:405341:407203:-1 gene:YDL025C // ensembl // 11 // --- YDL025W-A // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene 1.16643368349371 1.97167371452983 1.32747584173253 1.73499135246334 1.10073435570008 Max fold change below threshold 4 1.97167371452983 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776633_at YNL247W.S1 Protein required for cell viability 1.97036320929373 408.449066162109 608.752655029297 --- 6423 // cysteinyl-tRNA aminoacylation // inferred from direct assay /// 6534 // cysteine metabolism // non-traceable author statement 5737 // cytoplasm // inferred from direct assay 4817 // cysteine-tRNA ligase activity // inferred from direct assay 519.408996582031 366.366668701172 450.531463623047 698.096313476563 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL247W /GEN=RPA49 /DB_XREF=GI:6324082 /SEG=NC_001146:+182874,185177 /DEF=Protein required for cell viability /NOTE=Ynl247wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: cysteine-tRNA ligase activity [goid GO:0004817] [evidence IDA] [pmid 9523015]; go_process: cysteine metabolism [goid GO:0006534] [evidence NAS] [pmid 11752249]; go_process: cysteinyl-tRNA aminoacylation [goid GO:0006423] [evidence IDA] [pmid 9523015] --- --- --- --- --- --- S0005191 // YNL247W SGDID:S0005191, Chr XIV from 182874-185177, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019843 // cdna:Genscan chromosome:SGD1:XIV:182913:185177:1 // ensembl // 11 // --- /// GENEFINDER00000020488 // cdna:GeneFinder chromosome:SGD1:XIV:182913:185177:1 // ensembl // 11 // --- /// YNL247W // cdna:known chromosome:SGD1:XIV:182874:185177:1 gene:YNL247W // ensembl // 11 // --- --- No cerevisiae_gene 1.97036320929373 -1.41772994367479 1.26361736672763 -1.15288062770376 1.34402045030098 Max fold change below threshold 4 1.97036320929373 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776209_at SPBC336.15.S1 --- 1.97026583265044 --- --- --- --- 7.26514387130737 9.1968240737915 9.47913646697998 4.87165594100952 0.111571997404099 0.0952147990465164 0.171387001872063 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC336.15 /GEN=pic1 /DEF=localization centromere --- --- --- --- --- --- SPBC336.15 // |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.57544432097097 1.26588326903105 -1.97026583265044 1.30474174151133 -1.49130890179446 Max fold change below threshold 4 1.97026583265044 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776241_at YPR037C.S1 Flavin-linked sulfhydryl oxidase localized to the endoplasmic reticulum lumen, involved in disulfide bond formation within the ER 1.97021283323288 1061.98645019531 1643.06018066406 ERV2 6467 // protein thiol-disulfide exchange // inferred from genetic interaction 5792 // microsome // inferred from direct assay 16972 // thiol oxidase activity // inferred from direct assay 1612.51843261719 818.448852539063 1305.52404785156 1673.60192871094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR037C /GEN=ERV2 /DB_XREF=GI:6325296 /SEG=NC_001148:-646443,647033 /DEF=Flavin-linked sulfhydryl oxidase localized to the endoplasmic reticulum lumen, involved in disulfide bond formation within the ER /NOTE=Erv2p; go_component: microsome [goid GO:0005792] [evidence IDA] [pmid 11313344]; go_function: thiol oxidase activity [goid GO:0016972] [evidence IDA] [pmid 11313344]; go_process: protein thiol-disulfide exchange [goid GO:0006467] [evidence IGI] [pmid 11584268] --- --- --- --- --- S0006241 // span:13-35 // numtm:1 S0006241 // ERV2 SGDID:S0006241, Chr XVI from 647035-646445, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017216 // cdna:Genscan chromosome:SGD1:XVI:646445:647035:-1 // ensembl // 11 // --- /// GENEFINDER00000020915 // cdna:GeneFinder chromosome:SGD1:XVI:646445:647035:-1 // ensembl // 11 // --- /// YPR037C // cdna:known chromosome:SGD1:XVI:646445:647035:-1 gene:YPR037C // ensembl // 11 // --- YPR038W // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene -1.66535755245061 -1.97021283323288 1.01508506859819 -1.23515031015387 1.03788080486907 Max fold change below threshold 4 1.97021283323288 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770814_at SPAC2E1P3.02c.S1 --- 1.97008942879767 --- --- --- --- 3.51036953926086 4.88994932174683 6.91574192047119 4.83113193511963 0.24609400331974 0.423828125 0.0676269978284836 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2E1P3.02c /DEF=ammonium transporter (predicted) --- --- --- --- --- --- SPAC2E1P3.02c // |||ammonium transporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.29241840134147 1.39300129717296 1.66844859567562 1.97008942879767 1.37624597099736 Max fold change below threshold 4 1.97008942879767 Max fold change below threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1771617_at SPAC26A3.12c.S1 --- 1.97005582612561 --- --- --- --- 8.18255710601807 16.1200942993164 15.0193605422974 8.42033672332764 0.24609400331974 0.194580003619194 0.0952147990465164 0.0029296875 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26A3.12c /GEN=dhp1 /DEF=5-3 exoribonuclease (PMID 11238999) --- --- --- --- --- --- SPAC26A3.12c // |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.10692378162413 1.97005582612561 -1.85221936798762 1.83553384934533 1.02905932879279 Max fold change below threshold 4 1.97005582612561 Max fold change below threshold AAAAAP No 3 0 AAAP 3 1 0 No No x = 1
1771904_at YGL235W.S1 Protein of unknown function, potential Cdc28p substrate 1.96957353963435 8.89647662639618 7.59183478355408 --- --- --- --- 7.12646532058716 3.75685572624207 14.0360975265503 8.057204246521 0.0952147990465164 0.633789002895355 0.334473013877869 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL235W /GEN=MTO1 /DB_XREF=GI:6321201 /SEG=NC_001139:+55278,55814 /DEF=Protein of unknown function, potential Cdc28p substrate /NOTE=Ygl235wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003204 // YGL235W SGDID:S0003204, Chr VII from 55279-55815, Uncharacterized ORF // sgd // 11 // --- /// YGL235W // cdna:known chromosome:SGD1:VII:55279:55815:1 gene:YGL235W // ensembl // 11 // --- S0003205 // sgd // 10 // Negative Strand Matching Probes /// GENSCAN00000019173 // ensembl // 10 // Negative Strand Matching Probes /// GENEFINDER00000021724 // ensembl // 10 // Negative Strand Matching Probes /// YGL236C // ensembl // 10 // Negative Strand Matching Probes No cerevisiae_gene -1.77202027262159 -1.89692280989339 1.47519086459465 1.96957353963435 1.13060316497227 Max fold change below threshold 4 1.96957353963435 Max fold change below threshold APAAAP No 4 0 AAAP 3 1 0 No No x = 1
1775114_at YHR177W.S1 --- 1.96922261337687 29.4112710952759 41.337739944458 --- --- --- --- 39.4040374755859 25.7842922210693 33.0382499694824 43.2714424133301 0.000732421991415322 0.0107421996071935 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR177W /GEN=FMO1 /DB_XREF=GI:6321971 /SEG=NC_001140:+456589,457950 /DEF=Yhr177wp /NOTE=go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001220 // YHR177W SGDID:S0001220, Chr VIII from 456590-457951, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016701 // cdna:Genscan chromosome:SGD1:VIII:456590:457951:1 // ensembl // 11 // --- /// GENEFINDER00000020229 // cdna:GeneFinder chromosome:SGD1:VIII:456971:457951:1 // ensembl // 11 // --- /// YHR177W // cdna:known chromosome:SGD1:VIII:456590:457951:1 gene:YHR177W // ensembl // 11 // --- --- No cerevisiae_gene 1.32636793225482 -1.52821869755988 1.96922261337687 -1.19267931903123 1.09814742817003 Max fold change below threshold 4 1.96922261337687 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1775571_at YOL013C.S1 Ubiquitin-protein ligase required for endoplasmic reticulum-associated degradation (ERAD) of misfolded proteins; genetically linked to the unfolded protein response (UPR); regulated through association with Hrd3p; contains an H2 ring finger 1.96918524738939 1700.39501953125 1884.96923828125 HRD1 30433 // ER-associated protein catabolism // inferred from mutant phenotype /// 30433 // ER-associated protein catabolism // traceable author statement /// 30433 // ER-associated protein catabolism // inferred from physical interaction 5789 // endoplasmic reticulum membrane // inferred from direct assay 4842 // ubiquitin-protein ligase activity // inferred from mutant phenotype /// 4842 // ubiquitin-protein ligase activity // inferred from direct assay /// 4842 // ubiquitin-protein ligase activity // inferred from physical interaction 1848.02001953125 1724.57238769531 1676.21765136719 1921.91845703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL013C /GEN=HRD1 /DB_XREF=GI:6324561 /SEG=NC_001147:-301380,303035 /DEF=Ubiquitin-protein ligase required for endoplasmic reticulum-associated degradation (ERAD) of misfolded proteins; genetically linked to the unfolded protein response (UPR); regulated through association with Hrd3p; contains an H2 ring finger /NOTE=Hrd1p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 11139575]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence IDA,IMP,IPI] [pmid 11146622]; go_process: ER-associated protein catabolism [goid GO:0030433] [evidence IMP,IPI,TAS] [pmid 11146622] --- --- --- --- --- S0005373 // span:10-27,48-67,103-125,146-165 // numtm:4 S0005373 // HRD1 SGDID:S0005373, Chr XV from 303035-301380, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017457 // cdna:Genscan chromosome:SGD1:XV:301380:302465:-1 // ensembl // 11 // --- /// GENEFINDER00000022595 // cdna:GeneFinder chromosome:SGD1:XV:301380:302612:-1 // ensembl // 11 // --- /// YOL013C // cdna:known chromosome:SGD1:XV:301380:303035:-1 gene:YOL013C // ensembl // 11 // --- --- No cerevisiae_gene -1.96918524738939 -1.07158158898793 1.00231838604714 -1.10249406932562 1.03998789878843 Max fold change below threshold 4 1.96918524738939 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777121_at YDR156W.S1 RNA polymerase I subunit A14 1.96897255862933 3737.1787109375 1974.31372070313 RPA14 6360 // transcription from RNA polymerase I promoter // traceable author statement 5736 // DNA-directed RNA polymerase I complex // inferred from direct assay 3899 // DNA-directed RNA polymerase activity // inferred from direct assay 1940.38952636719 3820.57373046875 3653.78369140625 2008.23791503906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR156W /GEN=RPA14 /DB_XREF=GI:6320360 /SEG=NC_001136:+769519,769932 /DEF=RNA polymerase I subunit A14 /NOTE=Rpa14p; go_component: DNA-directed RNA polymerase I complex [goid GO:0005736] [evidence IDA] [pmid 7768955]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence IDA] [pmid 7768955]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS] --- --- --- --- --- --- S0002563 // RPA14 SGDID:S0002563, Chr IV from 769520-769933, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023814 // cdna:GeneFinder chromosome:SGD1:IV:769520:769933:1 // ensembl // 11 // --- /// GENSCAN00000025213 // cdna:Genscan chromosome:SGD1:IV:769520:769933:1 // ensembl // 11 // --- /// YDR156W // cdna:known chromosome:SGD1:IV:769520:769933:1 gene:YDR156W // ensembl // 11 // --- --- No cerevisiae_gene 1.2050641964092 1.96897255862933 -1.12790154526987 1.88301557071734 1.03496637543643 Max fold change below threshold 4 1.96897255862933 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772089_at YAL002W.S1 Membrane-associated hydrophilic protein that interacts with the small GTPase, Vps21p, to facilitate soluble vacuolar protein localization; required for localization and trafficking of the CPY sorting receptor; contains a RING finger motif 1.96870127471016 426.967010498047 803.804321289063 VPS8 45324 // late endosome to vacuole transport // inferred from genetic interaction /// 45324 // late endosome to vacuole transport // inferred from mutant phenotype 5624 // membrane fraction // inferred from direct assay --- 785.751647949219 399.431945800781 454.502075195313 821.856994628906 0.000244141003349796 0.0107421996071935 0.014160200022161 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL002W /GEN=VPS8 /DB_XREF=GI:41629668 /SEG=NC_001133:+143711,147535 /DEF=involved in vacuolar protein sorting; required for localization and trafficking of the CPY sorting receptor /NOTE=Vps8p; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 8969229]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: late endosome to vacuole transport [goid GO:0045324] [evidence IGI,IMP] [pmid 9265642] --- --- --- --- --- --- S0000002 // VPS8 SGDID:S0000002, Chr I from 143709-147533, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018204 // cdna:GeneFinder chromosome:SGD1:I:143709:147533:1 // ensembl // 11 // --- /// GENSCAN00000020377 // cdna:Genscan chromosome:SGD1:I:143709:147533:1 // ensembl // 11 // --- /// YAL002W // cdna:known chromosome:SGD1:I:143709:147533:1 gene:YAL002W // ensembl // 11 // --- --- No cerevisiae_gene -1.96870127471016 -1.96717277175701 -1.36532157201413 -1.72881861454991 1.04595007439554 Max fold change below threshold 4 1.96870127471016 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1778222_at YML085C.S1 Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules 1.96858808911877 2201.59661865234 3538.01794433594 TUB1 70 // mitotic sister chromatid segregation // traceable author statement /// 743 // nuclear migration during conjugation with cellular fusion // traceable author statement /// 30473 // nuclear migration, microtubule-mediated // traceable author statement /// 45143 // homologous chromosome segregation // traceable author statement 5816 // spindle pole body // inferred from direct assay /// 5827 // polar microtubule // traceable author statement /// 5828 // kinetochore microtubule // traceable author statement /// 5880 // nuclear microtubule // traceable author statement /// 5881 // cytoplasmic microtubule // traceable author statement /// 45298 // tubulin // traceable author statement 5200 // structural constituent of cytoskeleton // traceable author statement 3717.47314453125 1888.39562988281 2514.79760742188 3358.56274414063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML085C /GEN=TUB1 /DB_XREF=GI:6323554 /SEG=NC_001145:-97941,99400 /DEF=Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules /NOTE=Tub1p; go_component: cytoplasmic microtubule [goid GO:0005881] [evidence TAS]; go_component: kinetochore microtubule [goid GO:0005828] [evidence TAS]; go_component: nuclear microtubule [goid GO:0005880] [evidence TAS]; go_component: polar microtubule [goid GO:0005827] [evidence TAS]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 9585415]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence TAS]; go_process: homologous chromosome segregation [goid GO:0045143] [evidence TAS]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence TAS]; go_process: nuclear migration (sensu Saccharomyces) [goid GO:0000065] [evidence TAS]; go_process: nuclear migration during conjugation with cellular fusion [goid GO:0000743] [evidence TAS] --- --- --- --- --- --- S0004550 // TUB1 SGDID:S0004550, Chr XIII from 99400-99376,99259-97941, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// M28429 // S.cerevisiae alpha-tubulin (TUB1) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000018646 // cdna:Genscan chromosome:SGD1:XIII:97941:98675:-1 // ensembl // 11 // --- /// GENEFINDER00000021939 // cdna:GeneFinder chromosome:SGD1:XIII:97941:99400:-1 // ensembl // 11 // --- /// YML085C // cdna:known chromosome:SGD1:XIII:97941:99400:-1 gene:YML085C // ensembl // 11 // --- --- No cerevisiae_gene -1.06627645134868 -1.96858808911877 -1.17432182796245 -1.47823949472512 -1.10686428324639 Max fold change below threshold 4 1.96858808911877 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-P1-cre-5_at AFFX-r2-P1-cre-5 --- 1.9684783024324 --- --- --- --- 9652.4794921875 11516.3984375 4905.7587890625 4903.5234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 581-1001 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. --- --- --- --- --- --- X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// AFFX-r2-P1-cre-5 // Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 581-1001 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. // affx // --- // --- /// AFFX-r2-P1-cre-5 // --- // unknown // --- // --- /// AFFX-r2-P1-cre-5 // --- // unknown // --- // --- /// AFFX-r2-P1-cre-5 // --- // unknown // --- // --- /// AFFX-r2-P1-cre-5 // --- // unknown // --- // --- /// AFFX-r2-P1-cre-5 // --- // gb // --- // --- /// AFFX-r2-P1-cre-5 // Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 581-1001 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. // affx // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-P1-cre-5 // --- // unknown // --- // --- /// AFFX-r2-P1-cre-5 // --- // affx // --- // --- /// AFFX-r2-P1-cre-5 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-P1-cre-5 // --- // affx // --- // --- /// AFFX-r2-P1-cre-5 // --- // affx // --- // --- /// AFFX-r2-P1-cre-5 // --- // affx // --- // --- /// AFFX-r2-P1-cre-5 // --- // affx // --- // --- /// AFFX-r2-P1-cre-5 // --- // affx // --- // --- /// AFFX-r2-P1-cre-5 // --- // affx // --- // --- /// AFFX-r2-P1-cre-5 // --- // affx // --- // --- /// AFFX-r2-P1-cre-5 // --- // affx // --- // --- /// AFFX-r2-P1-cre-5 // --- // affx // --- // --- /// AFFX-r2-P1-cre-5 // --- // affx // --- // --- /// AFFX-r2-P1-cre-5 // --- // affx // --- // --- --- AFFX_control No -1.55053234482796 1.19310260610459 -1.61059795704291 -1.96758134821221 -1.9684783024324 Max fold change below threshold 4 1.9684783024324 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773404_at YPR056W.S1 Subunit of TFIIH complex, involved in transcription initiation, similar to 34 kDa subunit of human TFIIH; interacts with Ssl1p 1.96832524740649 312.598251342773 573.685119628906 TFB4 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 7070 // negative regulation of transcription from RNA polymerase II promoter, mitotic // traceable author statement 5675 // transcription factor TFIIH complex // traceable author statement /// 5675 // transcription factor TFIIH complex // inferred from direct assay 16251 // general RNA polymerase II transcription factor activity // traceable author statement 514.702575683594 261.492645263672 363.703857421875 632.667663574219 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR056W /GEN=TFB4 /DB_XREF=GI:6325313 /SEG=NC_001148:+671121,672137 /DEF=Subunit of TFIIH complex, involved in transcription initiation, similar to 34 kDa subunit of human TFIIH /NOTE=Tfb4p; go_component: transcription factor TFIIH complex [goid GO:0005675] [evidence TAS] [pmid 9774381]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9774381]; go_process: negative regulation of transcription from Pol II promoter, mitotic [goid GO:0007070] [evidence TAS] [pmid 10384273]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 10384286] --- --- --- --- --- --- S0006260 // TFB4 SGDID:S0006260, Chr XVI from 671123-672139, Verified ORF // sgd // 11 // --- /// GENSCAN00000017228 // cdna:Genscan chromosome:SGD1:XVI:671123:672139:1 // ensembl // 11 // --- /// GENEFINDER00000020886 // cdna:GeneFinder chromosome:SGD1:XVI:671123:672139:1 // ensembl // 11 // --- /// YPR056W // cdna:known chromosome:SGD1:XVI:671123:672139:1 gene:YPR056W // ensembl // 11 // --- --- No cerevisiae_gene 1.19837144740585 -1.96832524740649 -1.25150719370276 -1.41516941649197 1.22919078602619 Max fold change below threshold 4 1.96832524740649 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769909_at SPAC1783.04c.S1 --- 1.96831919445937 --- --- --- --- 0.774479448795319 1.52442276477814 1.20002496242523 0.607589900493622 0.969726979732513 0.870360970497131 0.962401986122131 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1783.04c /GEN=hst4 /DEF=Sir2p family --- --- --- --- --- --- AF173939 // Schizosaccharomyces pombe Hst4p (hst4+) mRNA, complete cds. // gb // 11 // --- /// SPAC1783.04c // |hst4||Sir2 family histone deacetylase Hst4|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.68005866547298 1.96831919445937 1.37938043233408 1.54946004608881 -1.27467465829519 Max fold change below threshold 0 1.96831919445937 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779988_at YAL009W.S1 Integral nuclear/ER membrane protein of unknown function, required for normal nuclear envelope morphology and sporulation 1.9676058469254 268.457458496094 343.059066772461 SPO7 6997 // nuclear organization and biogenesis // inferred from genetic interaction /// 6997 // nuclear organization and biogenesis // inferred from mutant phenotype /// 7126 // meiosis // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype 16021 // integral to membrane // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity /// 42175 // nuclear envelope-endoplasmic reticulum network // inferred from direct assay --- 277.712982177734 189.777618408203 347.137298583984 408.405151367188 0.00122069998178631 0.00415039015933871 0.00292969006113708 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL009W /GEN=SPO7 /DB_XREF=GI:6319310 /SEG=NC_001133:+135858,136637 /DEF=Integral nuclear/ER membrane protein of unknown function, required for normal nuclear envelope morphology and sporulation /NOTE=Spo7p; go_component: integral to membrane [goid GO:0016021] [evidence IDA,ISS] [pmid 9822591]; go_component: nuclear envelope-endoplasmic reticulum network [goid GO:0042175] [evidence IDA] [pmid 9822591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 4613605]; go_process: nuclear organization and biogenesis [goid GO:0006997] [evidence IGI,IMP] [pmid 9822591]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 9822591] --- --- --- --- --- S0000007 // span:73-95,105-127 // numtm:2 S0000007 // SPO7 SGDID:S0000007, Chr I from 135856-136635, Verified ORF // sgd // 11 // --- /// GENSCAN00000020373 // cdna:Genscan chromosome:SGD1:I:135856:136635:1 // ensembl // 11 // --- /// YAL009W // cdna:known chromosome:SGD1:I:135856:136635:1 gene:YAL009W // ensembl // 11 // --- --- No cerevisiae_gene -1.17018902590667 -1.4633600342712 1.9676058469254 1.24998585180227 1.47060158356519 Max fold change below threshold 4 1.9676058469254 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-TagQ-5_at AFFX-r2-TagQ-5 --- 1.96732103089765 --- --- --- --- 1.09564709663391 2.08289122581482 1.12302148342133 1.16266775131226 0.805419981479645 0.805419981479645 0.850341975688934 0.525634765625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Clone 76H1, synthetic insert (1000 bp)+ poly A tail (21 bp), 5 prime target sequence 1-400 --- --- --- --- --- --- AFFX-r2-TagQ-5 // --- // unknown // --- // --- /// AFFX-r2-TagQ-5 // --- // unknown // --- // --- /// AFFX-r2-TagQ-5 // --- // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-r2-TagQ-5 // --- // unknown // --- // --- /// AFFX-r2-TagQ-5 // --- // affx // --- // --- /// AFFX-r2-TagQ-5 // --- // affx // --- // --- /// AFFX-r2-TagQ-5 // --- // affx // --- // --- /// AFFX-r2-TagQ-5 // --- // affx // --- // --- /// AFFX-r2-TagQ-5 // --- // affx // --- // --- /// AFFX-r2-TagQ-5 // --- // affx // --- // --- /// AFFX-r2-TagQ-5 // --- // affx // --- // --- /// AFFX-r2-TagQ-5 // --- // affx // --- // --- /// AFFX-r2-TagQ-5 // --- // affx // --- // --- /// AFFX-r2-TagQ-5 // --- // affx // --- // --- /// AFFX-r2-TagQ-5 // --- // affx // --- // --- /// AFFX-r2-TagQ-5 // --- // affx // --- // --- --- AFFX_control No -1.65607086526847 1.90106032518496 -1.96732103089765 1.02498467514907 1.06116992860589 Max fold change below threshold 0 1.96732103089765 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774798_at SPBC530.10c.S1 --- 1.96729804721292 --- --- --- --- 25.8236217498779 28.9015865325928 33.386775970459 20.1479949951172 0.0375977009534836 0.018554700538516 0.0952147990465164 0.0461426004767418 P P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC530.10c /GEN=anc1 /DEF=adenine nucleotide carrier (PMID 8675018) --- --- --- --- --- --- D89102 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0141. // gb // 10 // --- /// SPBC530.10c // |anc1||adenine nucleotide carrier|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.96729804721292 1.1191918319021 -1.3228786722569 1.29287736220102 -1.2816968515297 Max fold change below threshold 4 1.96729804721292 Max fold change below threshold PPPAAP No 4 0 PPAP 1 3 0 No No 2 < x = 3
1778035_at YLR304C.S1 Aconitase, required for the tricarboxylic acid (TCA) cycle and also independently required for mitochondrial genome maintenance; component of the mitochondrial nucleoid; mutation leads to glutamate auxotrophy 1.96720775596832 6882.44311523438 5128.82592773438 ACO1 2 // mitochondrial genome maintenance // inferred from mutant phenotype /// 6099 // tricarboxylic acid cycle // traceable author statement /// 6101 // citrate metabolism // traceable author statement /// 6537 // glutamate biosynthesis // traceable author statement /// 19541 // propionate metabolism // inferred from expression pattern 5759 // mitochondrial matrix // traceable author statement /// 5829 // cytosol // traceable author statement /// 42645 // mitochondrial nucleoid // inferred from direct assay 3994 // aconitate hydratase activity // traceable author statement 5847.5927734375 8205.9951171875 5558.89111328125 4410.05908203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR304C /GEN=ACO1 /DB_XREF=GI:6323335 /SEG=NC_001144:-735214,737550 /DEF=Mitochondrial aconitase, required for the tricarboxylic acid (TCA) cycle; mutation leads to glutamate auxotrophy /NOTE=Aco1p; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 9175438]; go_component: mitochondrial matrix [goid GO:0005759] [evidence TAS] [pmid 9175438]; go_function: aconitate hydratase activity [goid GO:0003994] [evidence TAS] [pmid 9175438]; go_process: citrate metabolism [goid GO:0006101] [evidence TAS] [pmid 9175438]; go_process: glutamate biosynthesis [goid GO:0006537] [evidence TAS] [pmid 9175438]; go_process: propionate metabolism [goid GO:0019541] [evidence IEP] [pmid 11179416]; go_process: tricarboxylic acid cycle [goid GO:0006099] [evidence TAS] [pmid 9175438] --- --- --- --- --- --- S0004295 // ACO1 SGDID:S0004295, Chr XII from 737550-735214, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018055 // cdna:Genscan chromosome:SGD1:XII:735214:737550:-1 // ensembl // 11 // --- /// GENEFINDER00000024682 // cdna:GeneFinder chromosome:SGD1:XII:735214:737550:-1 // ensembl // 11 // --- /// YLR304C // cdna:known chromosome:SGD1:XII:735214:737550:-1 gene:YLR304C // ensembl // 11 // --- --- No cerevisiae_gene -1.96720775596832 1.4033116591947 -1.22963270382082 -1.05193511696361 -1.32596699152251 Max fold change below threshold 4 1.96720775596832 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777878_at YDR218C.S1 Septin-related protein expressed during sporulation 1.96671193938039 22.1090641021729 38.6040878295898 SPR28 902 // cellular morphogenesis // traceable author statement /// 7047 // cell wall organization and biogenesis // traceable author statement 144 // septin ring (sensu Saccharomyces) // traceable author statement 5200 // structural constituent of cytoskeleton // traceable author statement 35.0747985839844 23.7676906585693 20.4504375457764 42.1333770751953 0.00292969006113708 0.000244141003349796 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR218C /GEN=SPR28 /DB_XREF=GI:6320424 /SEG=NC_001136:-903773,905044 /DEF=Septin-related protein expressed during sporulation /NOTE=Spr28p; go_component: septin ring (sensu Saccharomyces) [goid GO:0000144] [evidence TAS] [pmid 8791410]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence TAS] [pmid 8791410]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence TAS] [pmid 8791410]; go_process: cellular morphogenesis [goid GO:0000902] [evidence TAS] [pmid 8791410] --- --- --- --- --- --- S0002626 // SPR28 SGDID:S0002626, Chr IV from 905046-903775, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023430 // cdna:GeneFinder chromosome:SGD1:IV:903775:905037:-1 // ensembl // 11 // --- /// GENSCAN00000025267 // cdna:Genscan chromosome:SGD1:IV:903775:905037:-1 // ensembl // 11 // --- /// YDR218C // cdna:known chromosome:SGD1:IV:903775:905046:-1 gene:YDR218C // ensembl // 11 // --- --- No cerevisiae_gene -1.19383942290488 -1.47573439455458 1.96671193938039 -1.71511237867027 1.20124359301193 Max fold change below threshold 4 1.96671193938039 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769625_at SPAC1142.05.S1 --- 1.96657817166813 --- --- --- --- 10.7925386428833 13.9348220825195 5.48797845840454 8.71796607971191 0.0461426004767418 0.129638999700546 0.334473013877869 0.0805663987994194 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1142.05 /GEN=ctr5 /DEF=copper transporter (subunit) (predicted) --- --- --- --- --- --- SPAC1142.05 // |ctr5||copper transporter complex |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.29217463864534 1.29115331838152 -1.61725536823159 -1.96657817166813 -1.23796520245694 Max fold change below threshold 4 1.96657817166813 Max fold change below threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1772498_at SPAC13F5.03c.S1 --- 1.96635986723793 --- --- --- --- 2.0895848274231 1.21110963821411 3.19236135482788 1.30168890953064 0.953857004642487 0.962401986122131 0.943848013877869 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13F5.03c /DEF=glycerol dehydrogenase (Phlippen, Stevens, Wolf, Zimmermann manuscript in preparation) --- --- --- --- --- --- SPAC13F5.03c // |||glycerol dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.17742005363332 -1.72534736863656 -1.96635986723793 1.52774910735007 -1.60528741708075 Max fold change below threshold 1 1.96635986723793 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769472_at YMR182C.S1 Putative transcriptional repressor with proline-rich zinc fingers; overproduction impairs cell growth 1.96615601590144 85.5929298400879 103.53112411499 RGM1 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from curator 3702 // RNA polymerase II transcription factor activity // inferred from direct assay /// 3702 // RNA polymerase II transcription factor activity // inferred from sequence similarity 101.019416809082 68.3845520019531 102.801307678223 106.042831420898 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR182C /GEN=RGM1 /DB_XREF=GI:6323836 /SEG=NC_001145:-624531,625166 /DEF=Putative transcriptional repressor with proline-rich zinc fingers /NOTE=Rgm1p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 1923755]; go_function: RNA polymerase II transcription factor activity [goid GO:0003702] [evidence IDA,ISS] [pmid 1923755]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IDA] [pmid 1923755] --- --- --- --- --- --- S0004794 // RGM1 SGDID:S0004794, Chr XIII from 625166-624531, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018867 // cdna:Genscan chromosome:SGD1:XIII:624531:625166:-1 // ensembl // 11 // --- /// GENEFINDER00000021836 // cdna:GeneFinder chromosome:SGD1:XIII:624531:625166:-1 // ensembl // 11 // --- /// YMR182C // cdna:known chromosome:SGD1:XIII:624531:625166:-1 gene:YMR182C // ensembl // 11 // --- --- No cerevisiae_gene 1.96615601590144 -1.47722568696797 1.32259270708144 1.01763909281429 1.04972721849415 Max fold change below threshold 4 1.96615601590144 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773706_at YOR145C.S1 Essential nucleolar protein required for pre-18S rRNA processing, interacts with Dim1p, an 18S rRNA dimethyltransferase, and also with Nob1p, which is involved in proteasome biogenesis; contains a KH domain 1.96594362733996 1282.19543457031 1365.69750976563 PNO1 6364 // rRNA processing // inferred from mutant phenotype /// 6365 // 35S primary transcript processing // inferred from mutant phenotype /// 6461 // protein complex assembly // inferred from mutant phenotype /// 6461 // protein complex assembly // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay 51082 // unfolded protein binding // inferred from physical interaction /// 51082 // unfolded protein binding // inferred from direct assay 1374.37280273438 1096.80236816406 1467.58850097656 1357.02221679688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR145C /GEN=PNO1 /DB_XREF=GI:6324720 /SEG=NC_001147:-605347,606171 /DEF=Partner of Nob1 /NOTE=Pno1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 10923024]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12502737]; go_function: chaperone activity [goid GO:0003754] [evidence IDA,IPI] [pmid 12502737]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence IMP] [pmid 12837249]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP,IPI] [pmid 12502737]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 12736301] --- --- --- --- --- --- S0005671 // PNO1 SGDID:S0005671, Chr XV from 606171-605347, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017571 // cdna:Genscan chromosome:SGD1:XV:605347:606171:-1 // ensembl // 10 // --- /// GENEFINDER00000022699 // cdna:GeneFinder chromosome:SGD1:XV:605347:606171:-1 // ensembl // 10 // --- /// YOR145C // cdna:known chromosome:SGD1:XV:605347:606171:-1 gene:YOR145C // ensembl // 10 // --- --- No cerevisiae_gene 1.96594362733996 -1.25307242455625 1.33235419352329 1.06782417263841 -1.01278577883452 Max fold change below threshold 4 1.96594362733996 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770799_at YDR322C-A.S1 Subunit e of mitochondrial F1F0-ATPase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis; essential for the dimeric state of ATP synthase 1.96562114589166 3655.98742675781 2082.08349609375 TIM11 15986 // ATP synthesis coupled proton transport // inferred from physical interaction /// 15986 // ATP synthesis coupled proton transport // inferred from sequence similarity /// 15986 // ATP synthesis coupled proton transport // inferred from mutant phenotype 276 // proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota) // inferred from physical interaction /// 276 // proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota) // inferred from sequence similarity /// 276 // proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota) // inferred from mutant phenotype 5198 // structural molecule activity // inferred from mutant phenotype /// 5198 // structural molecule activity // inferred from physical interaction 2204.22729492188 4332.67578125 2979.29907226563 1959.93969726563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR322C-A /GEN=TIM11 /DB_XREF=GI:6320529 /SEG=NC_001136:-1111996,1112286 /DEF=Protein associated with mitochondrial ATP synthase; essential for dimeric state of ATP synthase. /NOTE=Tim11p; go_component: proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukarya) [goid GO:0000276] [evidence ISS] [pmid 9271204]; go_component: proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukarya) [goid GO:0000276] [evidence IMP,IPI] [pmid 9857174]; go_function: structural molecule activity [goid GO:0005198] [evidence IMP,IPI] [pmid 9857174]; go_process: ATP synthesis coupled proton transport [goid GO:0015986] [evidence ISS] [pmid 9271204]; go_process: ATP synthesis coupled proton transport [goid GO:0015986] [evidence IMP,IPI] [pmid 9857174] --- --- --- --- --- --- S0007255 // TIM11 SGDID:S0007255, Chr IV from 1112288-1111998, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023630 // cdna:GeneFinder chromosome:SGD1:IV:1111998:1112288:-1 // ensembl // 11 // --- /// GENSCAN00000025352 // cdna:Genscan chromosome:SGD1:IV:1111998:1112219:-1 // ensembl // 9 // --- /// YDR322C-A // cdna:known chromosome:SGD1:IV:1111998:1112288:-1 gene:YDR322C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.14020530102077 1.96562114589166 1.01023125065418 1.35162969768561 -1.1246403641893 Max fold change below threshold 4 1.96562114589166 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772241_at YIL014W.S1 Alpha-1,3-mannosyltransferase, adds the fourth and fifth alpha-1,3-linked mannose residues to O-linked glycans during protein O-glycosylation 1.96511401935581 622.931060791016 376.366516113281 MNT3 6493 // O-linked glycosylation // inferred from direct assay --- 33 // alpha-1,3-mannosyltransferase activity // inferred from direct assay 351.759765625 554.614074707031 691.248046875 400.973266601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL014W /GEN=MNT3 /DB_XREF=GI:6322176 /SEG=NC_001141:+326101,327993 /DEF=MaNnosylTransferase; involved in adding the 4th and 5th mannose residues of O-linked glycans /NOTE=Mnt3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: alpha-1,3-mannosyltransferase activity [goid GO:0000033] [evidence IDA] [pmid 10521541]; go_process: O-linked glycosylation [goid GO:0006493] [evidence IDA] [pmid 10521541] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 6.40000009536743 S0001276 // span:12-31 // numtm:1 S0001276 // MNT3 SGDID:S0001276, Chr IX from 326101-327993, Verified ORF // sgd // 11 // --- /// GENSCAN00000016465 // cdna:Genscan chromosome:SGD1:IX:326101:327993:1 // ensembl // 11 // --- /// GENEFINDER00000019111 // cdna:GeneFinder chromosome:SGD1:IX:326704:327993:1 // ensembl // 11 // --- /// YIL014W // cdna:known chromosome:SGD1:IX:326101:327993:1 gene:YIL014W // ensembl // 11 // --- --- No cerevisiae_gene 1.05815903298705 1.57668422857175 1.44117571529309 1.96511401935581 1.13990656631557 Max fold change below threshold 4 1.96511401935581 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780176_at SPAC13G6.15c.S1 --- 1.96510323489449 --- --- --- --- 9.05642795562744 6.42934846878052 17.7968158721924 12.5674362182617 0.334473013877869 0.633789002895355 0.219482004642487 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G6.15c /DEF=calcipressin --- --- --- --- --- --- SPAC13G6.15c // ||SPAC24B11.04c|calcipressin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.63366620740149 -1.40860741949257 -1.24312686098834 1.96510323489449 1.3876813551476 Max fold change below threshold 4 1.96510323489449 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772145_at YLR371W.S1 GDP/GTP exchange protein (GEP) for Rho1p and Rho2p; mutations are synthetically lethal with mutations in rom1, which also encodes a GEP 1.96506638015316 447.416915893555 853.157501220703 ROM2 6897 // endocytosis // inferred from mutant phenotype /// 6950 // response to stress // inferred from mutant phenotype /// 7015 // actin filament organization // traceable author statement /// 7047 // cell wall organization and biogenesis // inferred from physical interaction /// 7117 // budding cell bud growth // inferred from physical interaction /// 7264 // small GTPase mediated signal transduction // inferred from physical interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction 5934 // bud tip // inferred from direct assay 4871 // signal transducer activity // inferred from physical interaction /// 5089 // Rho guanyl-nucleotide exchange factor activity // inferred from direct assay 796.982360839844 489.258544921875 405.575286865234 909.332641601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR371W /GEN=ROM2 /DB_XREF=GI:6323403 /SEG=NC_001144:+862713,866783 /DEF=GDP/GTP exchange protein (GEP) for Rho1p and Rho2p; mutations are synthetically lethal with mutations in rom1, which also encodes a GEP /NOTE=Rom2p; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 9891811]; go_function: Rho guanyl-nucleotide exchange factor activity [goid GO:0005089] [evidence IDA] [pmid 9891811]; go_function: signal transducer activity [goid GO:0004871] [evidence IPI] [pmid 9891811]; go_process: actin filament organization [goid GO:0007015] [evidence TAS] [pmid 9891811]; go_process: bud growth [goid GO:0007117] [evidence IPI] [pmid 9891811]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IPI] [pmid 9891811]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IPI] [pmid 9891811]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence IPI] [pmid 9891811] --- --- --- --- --- --- S0004363 // ROM2 SGDID:S0004363, Chr XII from 862713-866783, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024782 // cdna:GeneFinder chromosome:SGD1:XII:862713:866783:1 // ensembl // 11 // --- /// GENSCAN00000018100 // cdna:Genscan chromosome:SGD1:XII:863901:866783:1 // ensembl // 11 // --- /// YLR371W // cdna:known chromosome:SGD1:XII:862713:866783:1 gene:YLR371W // ensembl // 11 // --- --- No cerevisiae_gene -1.84599693449714 -1.62895951253566 1.18090424245079 -1.96506638015316 1.1409695951656 Max fold change below threshold 4 1.96506638015316 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771726_at YJR010C-A.S1 Subunit of the signal peptidase complex (SPC), which cleaves the signal sequence from proteins targeted to the endoplasmic reticulum (ER), homolog of the SPC12 subunit of mammalian signal peptidase complex 1.96500663699217 215.670829772949 363.297348022461 SPC1 6465 // signal peptide processing // inferred from physical interaction /// 6465 // signal peptide processing // inferred from mutant phenotype /// 6465 // signal peptide processing // inferred from sequence similarity /// 6465 // signal peptide processing // inferred from genetic interaction 5787 // signal peptidase complex // inferred from direct assay --- 349.078979492188 177.647735595703 253.693923950195 377.515716552734 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR010C-A /GEN=SPC1 /DB_XREF=GI:6322470 /SEG=NC_001142:-457991,458275 /DEF=Homolog of the SPC12 subunit of mammalian signal peptidase complex. Protein is important for efficient signal peptidase activity. /NOTE=Spc1p; go_component: signal peptidase complex [goid GO:0005787] [evidence IDA] [pmid 1846444]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 10921929]; go_process: signal peptide processing [goid GO:0006465] [evidence IPI] [pmid 1846444]; go_process: signal peptide processing [goid GO:0006465] [evidence IGI,IMP,ISS] [pmid 8663399] --- --- --- --- --- S0003770 // span:30-47,52-74 // numtm:2 S0003770 // SPC1 SGDID:S0003770, Chr X from 458275-457991, reverse complement, Verified ORF // sgd // 11 // --- /// YJR010C-A // cdna:known chromosome:SGD1:X:457991:458275:-1 gene:YJR010C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.2822827404005 -1.96500663699217 1.34552944323703 -1.37598478535386 1.08146218687219 Max fold change below threshold 4 1.96500663699217 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771980_at YKL084W.S1 Mitochondrial intermembrane space protein, first component of a pathway mediating assembly of small TIM (Translocase of the Inner Membrane) complexes which escort hydrophobic inner membrane proteins en route to the TIM22 complex 1.96480244804882 175.151420593262 374.945159912109 HOT13 45041 // mitochondrial intermembrane space protein import // inferred from mutant phenotype /// 45041 // mitochondrial intermembrane space protein import // inferred from physical interaction 5758 // mitochondrial intermembrane space // inferred from direct assay --- 341.379058837891 176.555572509766 173.747268676758 408.511260986328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL084W /GEN=MDH1 /DB_XREF=GI:6322766 /SEG=NC_001143:+280154,280504 /DEF=Hypothetical ORF /NOTE=Ykl084wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001567 // YKL084W SGDID:S0001567, Chr XI from 280154-280504, Uncharacterized ORF // sgd // 11 // --- /// YKL084W // cdna:known chromosome:SGD1:XI:280154:280504:1 gene:YKL084W // ensembl // 11 // --- GENEFINDER00000023029 // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene 1.34955077675755 -1.93355017904636 -1.33891590545308 -1.96480244804882 1.19665002996073 Max fold change below threshold 4 1.96480244804882 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779746_at YNR008W.S1 Acyltransferase that catalyzes diacylglycerol esterification; one of several acyltransferases that contribute to triglyceride synthesis; putative homolog of human lecithin cholesterol acyltransferase 1.9647477818929 307.671630859375 611.798553466797 LRO1 19432 // triacylglycerol biosynthesis // inferred from direct assay /// 19432 // triacylglycerol biosynthesis // inferred from mutant phenotype /// 19915 // lipid storage // inferred from mutant phenotype /// 19915 // lipid storage // inferred from direct assay 5783 // endoplasmic reticulum // traceable author statement 46027 // phospholipid:diacylglycerol acyltransferase activity // inferred from direct assay 555.928466796875 282.951568603516 332.391693115234 667.668640136719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR008W /GEN=LRO1 /DB_XREF=GI:6324335 /SEG=NC_001146:+640395,642380 /DEF=Lecithin cholesterol acyl transferase (LCAT) Related Orf /NOTE=Lro1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS] [pmid 11751830]; go_function: phospholipid:diacylglycerol acyltransferase activity [goid GO:0046027] [evidence IDA] [pmid 10747858]; go_process: lipid storage [goid GO:0019915] [evidence IDA,IMP] [pmid 10747858]; go_process: triacylglycerol biosynthesis [goid GO:0019432] [evidence IDA,IMP] [pmid 10747858] --- --- --- --- --- S0005291 // span:80-102 // numtm:1 S0005291 // LRO1 SGDID:S0005291, Chr XIV from 640396-642381, Verified ORF // sgd // 11 // --- /// GENSCAN00000020043 // cdna:Genscan chromosome:SGD1:XIV:640396:642381:1 // ensembl // 11 // --- /// GENEFINDER00000020668 // cdna:GeneFinder chromosome:SGD1:XIV:640396:642381:1 // ensembl // 11 // --- /// YNR008W // cdna:known chromosome:SGD1:XIV:640396:642381:1 gene:YNR008W // ensembl // 11 // --- --- No cerevisiae_gene -1.30188809773467 -1.9647477818929 1.0973491084866 -1.67251010874133 1.20099739447354 Max fold change below threshold 4 1.9647477818929 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772916_at YNR057C.S1 Dethiobiotin synthetase, catalyzes the third step in the biotin biosynthesis pathway; BIO4 is in a cluster of 3 genes (BIO3, BIO4, and BIO5) that mediate biotin synthesis; expression appears to be repressed at low iron levels 1.96441415702301 115.254112243652 76.5138549804688 BIO4 9102 // biotin biosynthesis // inferred from direct assay /// 9102 // biotin biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from sequence similarity 4141 // dethiobiotin synthase activity // inferred from direct assay /// 4141 // dethiobiotin synthase activity // inferred from sequence similarity 75.8654937744141 109.747299194336 120.760925292969 77.1622161865234 0.00122069998178631 0.00585938012227416 0.00805663969367743 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR057C /GEN=BIO4 /DB_XREF=GI:6324385 /SEG=NC_001146:-733353,734066 /DEF=Dethiobiotin synthetase, involved in the biosynthesis of biotin; BIO4 is in a cluster of 3 genes (BIO3, BIO4, and BIO5) that mediate biotin synthesis; expression of the gene appears to be repressed when iron levels are low /NOTE=Bio4p; go_component: cytoplasm [goid GO:0005737] [evidence ISS] [pmid 10333520]; go_function: dethiobiotin synthase activity [goid GO:0004141] [evidence IDA,ISS] [pmid 10333520]; go_process: biotin biosynthesis [goid GO:0009102] [evidence IDA,IMP] [pmid 10333520] --- --- --- --- --- --- S0005340 // BIO4 SGDID:S0005340, Chr XIV from 734067-733354, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020084 // cdna:Genscan chromosome:SGD1:XIV:733354:734067:-1 // ensembl // 11 // --- /// YNR057C // cdna:known chromosome:SGD1:XIV:733354:734067:-1 gene:YNR057C // ensembl // 11 // --- --- No cerevisiae_gene 1.63012857605742 1.446603636703 1.96441415702301 1.59177669958956 1.01709238742933 Max fold change below threshold 4 1.96441415702301 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1776470_at SPBC15C4.05.S1 --- 1.96422754502995 --- --- --- --- 4.81568479537964 6.33863830566406 9.4591007232666 5.43151712417603 0.303710997104645 0.219482004642487 0.0461426004767418 0.24609400331974 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC15C4.05 /DEF=ATP-dependent (predicted) --- --- --- --- --- --- SPBC15C4.05 // |||ATP-dependent |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.1494055532787 1.3162485866487 -1.03857844487753 1.96422754502995 1.12788053100719 Max fold change below threshold 4 1.96422754502995 Max fold change below threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1778593_at YKR015C.S1 Hypothetical protein 1.96411385676049 42.1400165557861 23.3490629196167 --- --- --- --- 26.5257568359375 34.6996154785156 49.5804176330566 20.1723690032959 0.0239257998764515 0.018554700538516 0.018554700538516 0.00805663969367743 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR015C /GEN=YPT52 /DB_XREF=GI:6322867 /SEG=NC_001143:-466604,468310 /DEF=Hypothetical ORF /NOTE=Ykr015cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001723 // YKR015C SGDID:S0001723, Chr XI from 468310-466604, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018429 // cdna:Genscan chromosome:SGD1:XI:466604:467557:-1 // ensembl // 11 // --- /// GENEFINDER00000023170 // cdna:GeneFinder chromosome:SGD1:XI:466604:468310:-1 // ensembl // 11 // --- /// YKR015C // cdna:known chromosome:SGD1:XI:466604:468310:-1 gene:YKR015C // ensembl // 11 // --- --- No cerevisiae_gene -1.96411385676049 1.3081479896364 -1.22492070506194 1.86914243162647 -1.31495496793676 Max fold change below threshold 4 1.96411385676049 Max fold change below threshold PPPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1771946_at SPAC6G9.06c.S1 --- 1.96374069788385 --- --- --- --- 0.903298556804657 0.459988713264465 1.25122559070587 0.871877670288086 0.753906011581421 0.870360970497131 0.567627012729645 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G9.06c /GEN=pcp1 /DEF=gamma tubulin complex (associated with) (PMID Venkatram et al in press) --- --- --- --- --- --- SPAC6G9.06c // |pcp1||pericentrin homolog Pcp1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.78307909521428 -1.96374069788385 -1.49198797181741 1.38517390654534 -1.03603818240487 Max fold change below threshold 0 1.96374069788385 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773056_at YOL019W.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and vacuole 1.96364200783178 293.856719970703 290.72265625 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay --- 277.619537353516 190.350219726563 397.363220214844 303.825775146484 0.00585938012227416 0.00805663969367743 0.000732421991415322 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL019W /GEN=TAT2 /DB_XREF=GI:6324554 /SEG=NC_001147:+288898,290553 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and vacuole /NOTE=Yol019wp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005379 // span:7-29,95-117,130-152,162-184 // numtm:4 S0005379 // YOL019W SGDID:S0005379, Chr XV from 288898-290553, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017452 // cdna:Genscan chromosome:SGD1:XV:288955:290607:1 // ensembl // 11 // --- /// GENEFINDER00000022680 // cdna:GeneFinder chromosome:SGD1:XV:288955:290607:1 // ensembl // 11 // --- /// YOL019W // cdna:known chromosome:SGD1:XV:288898:290553:1 gene:YOL019W // ensembl // 11 // --- --- No cerevisiae_gene 1.96364200783178 -1.45846712313921 -1.51275199681786 1.43132296812687 1.09439623033302 Max fold change below threshold 4 1.96364200783178 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1777538_at SPCC1281.04.S1 --- 1.96355800808788 --- --- --- --- 9.63377857208252 16.4179344177246 14.5594501495361 5.43739175796509 0.194580003619194 0.00415039015933871 0.0375977009534836 0.194580003619194 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1281.04 /DEF=pyridoxal reductase (predicted) --- --- --- --- --- --- SPCC1281.04 // |||pyridoxal reductase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.96355800808788 1.70420508369392 1.09124905004074 1.51129175749665 -1.7717646623439 Max fold change below threshold 4 1.96355800808788 Max fold change below threshold AAPPPA No 3 0 APPA 2 2 0 No No 1 < x = 2
1776996_at YNL255C.S1 Putative zinc finger protein with similarity to human CNBP, proposed to be involved in the RAS/cAMP signaling pathway 1.96334731057766 1990.76788330078 2009.06866455078 GIS2 7242 // intracellular signaling cascade // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay 3700 // transcription factor activity // inferred from sequence similarity 1984.04821777344 1918.52136230469 2063.01440429688 2034.08911132813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL255C /GEN=GIS2 /DB_XREF=GI:6324074 /SEG=NC_001146:-167328,167789 /DEF=GIG3 suppressor /NOTE=Gis2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: transcription factor activity [goid GO:0003700] [evidence ISS] [pmid 10628841]; go_process: intracellular signaling cascade [goid GO:0007242] [evidence IGI] [pmid 10628841] --- --- --- --- --- --- S0005199 // GIS2 SGDID:S0005199, Chr XIV from 167789-167328, reverse complement, Verified ORF // sgd // 11 // --- /// YNL255C // cdna:known chromosome:SGD1:XIV:167328:167789:-1 gene:YNL255C // ensembl // 11 // --- --- No cerevisiae_gene 1.96334731057766 -1.03415487403801 1.0243081368653 1.03980053801921 1.02522161160521 Max fold change below threshold 4 1.96334731057766 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-CreX-3_at AFFX-CreX-3 --- 1.96297013293968 --- --- --- --- 7493.4990234375 8950.1748046875 3947.51928710938 3817.42895507813 4.42872878920753E-5 4.42872878920753E-5 4.42872878920753E-5 4.42872878920753E-5 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. --- --- --- --- --- --- X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// X03453 // X03453 /description=Bacteriophage P1 ORF2, putatitve cre protein // gb // --- // --- /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// AFFX-CreX-3 // Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. // affx // --- // --- /// X03453 // Bacteriophage /REF=X03453 /DEF=Bacteriophage P1 cre recombinase protein /LEN=1058 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// AFFX-CreX-3 // --- // unknown // --- // --- /// AFFX-CreX-3 // --- // unknown // --- // --- /// AFFX-CreX-3 // --- // unknown // --- // --- /// AFFX-CreX-3 // --- // unknown // --- // --- /// AFFX-CreX-3 // --- // gb // --- // --- /// AFFX-CreX-3 // Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. // affx // --- // --- /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // --- // --- /// --- // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-CreX-3 // --- // unknown // --- // --- /// AFFX-CreX-3 // --- // affx // --- // --- /// AFFX-CreX-3 // --- // affx // --- // --- /// --- // --- // affx // --- // --- /// AFFX-CreX-3 // --- // affx // --- // --- /// AFFX-CreX-3 // --- // affx // --- // --- /// AFFX-CreX-3 // --- // affx // --- // --- /// AFFX-CreX-3 // --- // affx // --- // --- /// AFFX-CreX-3 // --- // affx // --- // --- /// AFFX-CreX-3 // --- // affx // --- // --- /// AFFX-CreX-3 // --- // affx // --- // --- /// AFFX-CreX-3 // --- // affx // --- // --- /// AFFX-CreX-3 // --- // affx // --- // --- /// AFFX-CreX-3 // --- // affx // --- // --- /// AFFX-CreX-3 // --- // affx // --- // --- --- AFFX_control No -1.51614270072556 1.1943919358225 -1.55174869791798 -1.89828053479245 -1.96297013293968 Max fold change below threshold 4 1.96297013293968 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773283_at YDL035C.S1 Plasma membrane G protein coupled receptor (GPCR) that interacts with the heterotrimeric G protein alpha subunit, Gpa2p, and with Plc1p; sensor that integrates nutritional signals with the modulation of cell fate via PKA and cAMP synthesis 1.96293582402946 707.924682617188 1401.49896240234 GPR1 1302 // replicative cell aging // inferred from mutant phenotype /// 7124 // pseudohyphal growth // inferred from mutant phenotype /// 7186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 7186 // G-protein coupled receptor protein signaling pathway // inferred from physical interaction 5886 // plasma membrane // inferred from direct assay 4930 // G-protein coupled receptor activity // inferred from mutant phenotype /// 4930 // G-protein coupled receptor activity // inferred from physical interaction /// 4930 // G-protein coupled receptor activity // inferred from sequence similarity 1347.44030761719 729.408020019531 686.441345214844 1455.5576171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL035C /GEN=GPR1 /DB_XREF=GI:6320170 /SEG=NC_001136:-389169,392054 /DEF=Plasma membrane G-protein coupled receptor that interacts with the heterotrimeric G protein alpha subunit, Gpa2p, and with Plc1p; sensor that integrates nutritional signals with the modulation of cell fate via PKA and cAMP synthesis /NOTE=Gpr1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 10655215]; go_function: G-protein coupled receptor activity [goid GO:0004930] [evidence IMP,IPI,ISS] [pmid 9524122]; go_process: G-protein coupled receptor protein signaling pathway [goid GO:0007186] [evidence IMP,IPI] [pmid 9524122]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 10655215] --- --- --- --- --- S0002193 // span:57-79,92-114,134-156,179-198,251-273,620-642 // numtm:6 S0002193 // GPR1 SGDID:S0002193, Chr IV from 392054-389169, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023687 // cdna:GeneFinder chromosome:SGD1:IV:389169:391817:-1 // ensembl // 11 // --- /// GENSCAN00000025074 // cdna:Genscan chromosome:SGD1:IV:389169:390092:-1 // ensembl // 11 // --- /// YDL035C // cdna:known chromosome:SGD1:IV:389169:392054:-1 gene:YDL035C // ensembl // 11 // --- --- No cerevisiae_gene -1.75924492709598 -1.84730667971146 -1.04921352930536 -1.96293582402946 1.08023903467865 Max fold change below threshold 4 1.96293582402946 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771552_at YDR217C.S1 DNA damage-dependent checkpoint protein, required for cell-cycle arrest in G1/S, intra-S, and G2/M; transmits checkpoint signal by activating Rad53p and Chk1p; hyperphosphorylated by Mec1p and Tel1p; potential Cdc28p substrate 1.9626162363563 105.177280426025 102.629070281982 RAD9 74 // regulation of cell cycle // inferred from mutant phenotype /// 74 // regulation of cell cycle // inferred from genetic interaction /// 77 // DNA damage checkpoint // inferred from mutant phenotype /// 6281 // DNA repair // inferred from mutant phenotype /// 6281 // DNA repair // inferred from genetic interaction /// 6289 // nucleotide-excision repair // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 5634 // nucleus // inferred from curator 5515 // protein binding // inferred from direct assay 91.4509658813477 104.691932678223 105.662628173828 113.807174682617 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR217C /GEN=RAD9 /DB_XREF=GI:6320423 /SEG=NC_001136:-899543,903472 /DEF=DNA damage-dependent checkpoint protein, required for cell-cycle arrest in G1/S, intra-S, and G2/M; transmits checkpoint signal by activating Rad53p and Chk1p; hyperphosphorylated by Mec1p and Tel1p; potential Cdc28p substrate /NOTE=Rad9p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 2664461]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 12049741]; go_process: DNA damage response, signal transduction resulting in cell cycle arrest [goid GO:0000077] [evidence IMP] [pmid 9564050]; go_process: DNA repair [goid GO:0006281] [evidence IGI,IMP] [pmid 2664461]; go_process: nucleotide-excision repair [goid GO:0006289] [evidence IMP] [pmid 11267834]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IMP] [pmid 8670896]; go_process: regulation of cell cycle [goid GO:0000074] [evidence IGI,IMP] [pmid 2664461] --- --- --- --- --- --- S0002625 // RAD9 SGDID:S0002625, Chr IV from 903474-899545, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023781 // cdna:GeneFinder chromosome:SGD1:IV:899545:903474:-1 // ensembl // 11 // --- /// GENSCAN00000025266 // cdna:Genscan chromosome:SGD1:IV:899545:903378:-1 // ensembl // 11 // --- /// YDR217C // cdna:known chromosome:SGD1:IV:899545:903474:-1 gene:YDR217C // ensembl // 11 // --- --- No cerevisiae_gene -1.9626162363563 1.14478761016099 1.63969182076643 1.15540199226457 1.24446115561289 Max fold change below threshold 4 1.9626162363563 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771064_at YBR275C.S1 Protein that binds to the Rap1p C-terminus and acts synergistically with Rif2p to help control telomere length and establish telomeric silencing; deletion results in telomere elongation 1.96253824987418 91.0159873962402 130.226715087891 RIF1 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 7004 // telomerase-dependent telomere maintenance // inferred from mutant phenotype 783 // nuclear telomere cap complex // inferred from direct assay 5515 // protein binding // inferred from genetic interaction /// 5515 // protein binding // inferred from physical interaction /// 42162 // telomeric DNA binding // inferred from physical interaction 131.591384887695 67.051628112793 114.980346679688 128.862045288086 0.0239257998764515 0.030273400247097 0.0239257998764515 0.018554700538516 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR275C /GEN=RIF1 /DB_XREF=GI:6319752 /SEG=NC_001134:-751313,757063 /DEF=RAP1-interacting factor, involved in establishment of repressed chromatin /NOTE=Rif1p; go_component: nuclear telomere cap complex [goid GO:0000783] [evidence IDA] [pmid 9710643]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 1577274]; go_process: telomerase-dependent telomere maintenance [goid GO:0007004] [evidence IMP] [pmid 1577274] --- --- --- --- --- --- S0000479 // RIF1 SGDID:S0000479, Chr II from 757101-751351, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000021359 // cdna:Genscan chromosome:SGD1:II:751351:757101:-1 // ensembl // 10 // --- /// GENEFINDER00000022324 // cdna:GeneFinder chromosome:SGD1:II:751351:753882:-1 // ensembl // 10 // --- /// YBR275C // cdna:known chromosome:SGD1:II:751351:757101:-1 gene:YBR275C // ensembl // 10 // --- --- No cerevisiae_gene 1.0300734939685 -1.96253824987418 1.16916089602785 -1.14446849994532 -1.02118032189779 Max fold change below threshold 4 1.96253824987418 Max fold change below threshold PPPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1776332_at YLR403W.S1 Transcription factor that controls expression of many ribosome biogenesis genes in response to nutrients and stress, regulates G2/M transitions during mitotic cell cycle and DNA-damage response, involved in cell size modulation 1.96253618226544 1314.71380615234 760.254241943359 SFP1 6383 // transcription from RNA polymerase III promoter // inferred from genetic interaction /// 6383 // transcription from RNA polymerase III promoter // inferred from physical interaction /// 6383 // transcription from RNA polymerase III promoter // traceable author statement /// 7046 // ribosome biogenesis // inferred from mutant phenotype /// 8361 // regulation of cell size // inferred from direct assay /// 8361 // regulation of cell size // inferred from genetic interaction /// 8361 // regulation of cell size // inferred from mutant phenotype 5634 // nucleus // traceable author statement /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3700 // transcription factor activity // traceable author statement /// 3700 // transcription factor activity // inferred from genetic interaction 736.892639160156 1446.17846679688 1183.24914550781 783.615844726563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR403W /GEN=SFP1 /DB_XREF=GI:6323435 /SEG=NC_001144:+925566,927617 /DEF=Inhibits nuclear protein localization when present in multiple copies /NOTE=Sfp1p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 9832520]; go_function: transcription factor activity [goid GO:0003700] [evidence TAS] [pmid 12089449]; go_process: regulation of cell size [goid GO:0008361] [evidence IDA] [pmid 12089449] --- --- --- --- --- --- S0004395 // SFP1 SGDID:S0004395, Chr XII from 925566-927617, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024909 // cdna:GeneFinder chromosome:SGD1:XII:925581:927617:1 // ensembl // 11 // --- /// YLR403W // cdna:known chromosome:SGD1:XII:925566:927617:1 gene:YLR403W // ensembl // 11 // --- GENSCAN00000018122 // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene 1.80160932653671 1.96253618226544 1.10462999644917 1.6057280024623 1.06340571622436 Max fold change below threshold 4 1.96253618226544 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779638_at YLR227C.S1 Structural component of the meiotic outer plaque, which is a membrane-organizing center that assembles on the cytoplasmic face of the spindle pole body during meiosis II and triggers the formation of the prospore membrane 1.96250510745859 177.186340332031 330.958938598633 ADY4 30435 // sporulation // inferred from mutant phenotype /// 30435 // sporulation // inferred from expression pattern 5816 // spindle pole body // inferred from direct assay /// 5816 // spindle pole body // inferred from mutant phenotype 5198 // structural molecule activity // inferred from direct assay /// 5198 // structural molecule activity // inferred from mutant phenotype 306.932373046875 197.974426269531 156.398254394531 354.985504150391 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR227C /GEN=ADY4 /DB_XREF=GI:6323256 /SEG=NC_001144:-590564,592045 /DEF=Component of the meiotic outer plaque, a membrane-organizing center that assembles on the cytoplasmic face of the spindle pole body during meiosis II and triggers the formation of the prospore membrane /NOTE=Ady4p; go_component: spindle pole body [goid GO:0005816] [evidence IDA,IMP] [pmid 12796288]; go_function: structural molecule activity [goid GO:0005198] [evidence IDA,IMP] [pmid 12796288]; go_process: sporulation [goid GO:0030435] [evidence IEP,IMP] [pmid 11470404] --- --- --- --- --- --- S0004217 // ADY4 SGDID:S0004217, Chr XII from 592045-590564, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017996 // cdna:Genscan chromosome:SGD1:XII:590564:591796:-1 // ensembl // 11 // --- /// GENEFINDER00000024816 // cdna:GeneFinder chromosome:SGD1:XII:590564:591796:-1 // ensembl // 11 // --- /// YLR227C // cdna:known chromosome:SGD1:XII:590564:592045:-1 gene:YLR227C // ensembl // 11 // --- --- No cerevisiae_gene 1.1359686643679 -1.5503637456133 1.07263352145053 -1.96250510745859 1.15655934441356 Max fold change below threshold 4 1.96250510745859 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770709_at YER007C-A.S1 Hypothetical protein 1.96216348702522 686.467407226563 1169.21276855469 --- --- 5737 // cytoplasm // inferred from direct assay 3723 // RNA binding // inferred from sequence similarity 1100.86413574219 561.046081542969 811.888732910156 1237.56140136719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER007C-A /GEN=PAC2 /DB_XREF=GI:6320844 /SEG=NC_001137:-166236,166884 /DEF=Hypothetical ORF /NOTE=Yer007c-ap; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 10093218]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002957 // YER007C-A SGDID:S0002957, Chr V from 166884-166874,166770-166236, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YER007C-A // cdna:known chromosome:SGD1:V:166236:166884:-1 gene:YER007C-A // ensembl // 11 // --- GENSCAN00000016810 // ensembl // 3 // Cross Hyb Matching Probes No cerevisiae_gene 1.21808983731818 -1.96216348702522 1.32063922617608 -1.35592981047565 1.12417269414708 Max fold change below threshold 4 1.96216348702522 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773792_at YIL097W.S1 Protein of unknown function, required for survival upon exposure to K1 killer toxin; involved in proteasome-dependent catabolite inactivation of fructose-1,6-bisphosphatase; contains CTLH domain 1.96212463608536 933.744934082031 618.135192871094 FYV10 45721 // negative regulation of gluconeogenesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 583.075622558594 963.565734863281 903.924133300781 653.194763183594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL097W /GEN=FYV10 /DB_XREF=GI:6322094 /SEG=NC_001141:+180424,181974 /DEF=Protein of unknown function, required for survival upon exposure to K1 killer toxin; involved in proteasome-dependent catabolite inactivation of fructose-1,6-bisphosphatase; contains CTLH domain /NOTE=Fyv10p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: negative regulation of gluconeogenesis [goid GO:0045721] [evidence IMP] [pmid 12686616] --- --- --- --- --- --- S0001359 // FYV10 SGDID:S0001359, Chr IX from 180424-181974, Verified ORF // sgd // 11 // --- /// GENSCAN00000016404 // cdna:Genscan chromosome:SGD1:IX:180424:181974:1 // ensembl // 11 // --- /// YIL097W // cdna:known chromosome:SGD1:IX:180424:181974:1 gene:YIL097W // ensembl // 11 // --- --- No cerevisiae_gene -1.96212463608536 1.65255705706759 1.66687218435963 1.55026912175521 1.12025736956265 Max fold change below threshold 4 1.96212463608536 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775161_at YLR320W.S1 Protein involved in resistance to ionizing radiation; acts with Mms1p in a repair pathway that may be involved in resolving replication intermediates or preventing the damage caused by blocked replication forks 1.96195281224847 87.5682563781738 160.053726196289 MMS22 6302 // double-strand break repair // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 154.631240844727 82.9271621704102 92.2093505859375 165.476211547852 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR320W /GEN=MMS22 /DB_XREF=GI:6323352 /SEG=NC_001144:+771940,776304 /DEF=Mms22p /NOTE=go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: double-strand break repair [goid GO:0006302] [evidence IMP] [pmid 11726929] --- --- --- --- --- --- S0004312 // MMS22 SGDID:S0004312, Chr XII from 771940-776304, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024783 // cdna:GeneFinder chromosome:SGD1:XII:771940:776304:1 // ensembl // 11 // --- /// GENSCAN00000018067 // cdna:Genscan chromosome:SGD1:XII:772210:776304:1 // ensembl // 11 // --- /// YLR320W // cdna:known chromosome:SGD1:XII:771940:776304:1 gene:YLR320W // ensembl // 11 // --- --- No cerevisiae_gene -1.96195281224847 -1.86466335996123 -1.02814476613615 -1.67695835468023 1.07013440908759 Max fold change below threshold 4 1.96195281224847 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770488_at YHR158C.S1 Protein required for proper cell fusion and cell morphology; functions in a complex with Kel2p to negatively regulate mitotic exit, interacts with Tem1p and Lte1p; localizes to regions of polarized growth; potential Cdc28p substrate 1.96171854003115 118.187084197998 224.548004150391 KEL1 755 // cytogamy // inferred from genetic interaction /// 755 // cytogamy // inferred from mutant phenotype /// 755 // cytogamy // inferred from physical interaction /// 902 // cellular morphogenesis // traceable author statement /// 1100 // negative regulation of exit from mitosis // inferred from mutant phenotype /// 1100 // negative regulation of exit from mitosis // inferred from physical interaction /// 8360 // regulation of cell shape // inferred from mutant phenotype /// 45026 // plasma membrane fusion // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay --- 217.517486572266 125.49308013916 110.881088256836 231.578521728516 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR158C /GEN=KEL1 /DB_XREF=GI:6321952 /SEG=NC_001140:-413686,417180 /DEF=Protein required for proper cell fusion and cell morphology; functions in a complex with Kel2p to negatively regulate mitotic exit, interacts with Tem1p and Lte1p; localizes to regions of polarized growth; potential Cdc28p substrate /NOTE=Kel1p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 9786949]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 9786949]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 9786949]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cellular morphogenesis [goid GO:0000902] [evidence TAS] [pmid 11079560]; go_process: cytogamy [goid GO:0000755] [evidence IGI,IMP,IPI] [pmid 9786949]; go_process: plasma membrane fusion [goid GO:0045026] [evidence TAS] [pmid 11079560]; go_process: regulation of cell shape [goid GO:0008360] [evidence IMP] [pmid 9786949] --- --- --- --- scop // a.2.5.Prefoldin // All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin // 0.529999971389771 --- S0001201 // KEL1 SGDID:S0001201, Chr VIII from 417181-413687, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016685 // cdna:Genscan chromosome:SGD1:VIII:413687:417181:-1 // ensembl // 11 // --- /// GENEFINDER00000020109 // cdna:GeneFinder chromosome:SGD1:VIII:413687:417181:-1 // ensembl // 11 // --- /// YHR158C // cdna:known chromosome:SGD1:VIII:413687:417181:-1 gene:YHR158C // ensembl // 11 // --- --- No cerevisiae_gene -1.39664500913316 -1.73330263573943 1.21544056895345 -1.96171854003115 1.06464324031061 Max fold change below threshold 4 1.96171854003115 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778146_at YNL056W.S1 Cytoplasmic protein required for replication of Brome mosaic virus in S. cerevisiae, which is a model system for studying replication of positive-strand RNA viruses in their natural hosts 1.96100957620721 329.545539855957 486.268127441406 --- --- 5737 // cytoplasm // inferred from direct assay --- 461.237884521484 235.204299926758 423.886779785156 511.298370361328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL056W /GEN=ARP5 /DB_XREF=GI:6324272 /SEG=NC_001146:+517247,517840 /DEF=Hypothetical ORF /NOTE=Ynl056wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005001 // YNL056W SGDID:S0005001, Chr XIV from 517248-517841, Uncharacterized ORF // sgd // 11 // --- /// YNL056W // cdna:known chromosome:SGD1:XIV:517248:517841:1 gene:YNL056W // ensembl // 11 // --- --- No cerevisiae_gene -1.0730864371087 -1.96100957620721 1.10970413018052 -1.08811575759749 1.1085350694724 Max fold change below threshold 4 1.96100957620721 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773692_at SPBC428.02c.S1 --- 1.96072983714226 --- --- --- --- 7.77718544006348 8.9621753692627 15.2489595413208 6.72560977935791 0.24609400331974 0.466064006090164 0.303710997104645 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC428.02c /GEN=eca39 /DEF=branched chain amino acid aminotransferase --- --- --- --- --- --- SPBC428.02c // |eca39|SPBC582.12c|branched chain amino acid aminotransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 1.09691133137216 1.15236745199553 -1.23308620612227 1.96072983714226 -1.15635395082436 Max fold change below threshold 4 1.96072983714226 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770647_at SPAC144.18.S1 --- 1.96068966381053 --- --- --- --- 5.89683246612549 4.98044729232788 4.40630388259888 3.797931432724 0.018554700538516 0.432372987270355 0.274170011281967 0.5 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC144.18 /DEF=nucleotide sugar transporter (predicted) --- --- --- --- --- --- SPAC144.18 // |||nucleotide sugar transporter |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.42032695607847 -1.18399656095332 -1.96068966381053 -1.33827185397106 -1.55264321396558 Max fold change below threshold 4 1.96068966381053 Max fold change below threshold PPAAAA No 4 0 PAAA 3 1 0 No No x = 1
1775047_at SPBC30B4.04c.S1 --- 1.96002578156499 --- --- --- --- 13.4186925888062 8.59048748016357 26.3009834289551 10.4516324996948 0.149657994508743 0.219482004642487 0.0952147990465164 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30B4.04c /DEF=transcriptional regulator (predicted) --- --- --- --- --- --- SPBC30B4.04c // |||transcriptional regulator |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.61233670536476 -1.56204087600284 -1.01901489879535 1.96002578156499 -1.28388484662066 Max fold change below threshold 4 1.96002578156499 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774627_at YER003C.S1 Mannose-6-phosphate isomerase, catalyzes the interconversion of fructose-6-P and mannose-6-P; required for early steps in protein mannosylation 1.96001346600994 924.949401855469 1237.25677490234 PMI40 32 // cell wall mannoprotein biosynthesis // inferred from mutant phenotype /// 6486 // protein amino acid glycosylation // inferred from mutant phenotype /// 9298 // GDP-mannose biosynthesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4476 // mannose-6-phosphate isomerase activity // inferred from direct assay 1182.44763183594 767.152465820313 1082.74633789063 1292.06591796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER003C /GEN=PMI40 /DB_XREF=GI:6320839 /SEG=NC_001137:-157735,159117 /DEF=catalyzes the interconversion of fructose-6-P and mannose-6-P /NOTE=Pmi40p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: mannose-6-phosphate isomerase activity [goid GO:0004476] [evidence IDA] [pmid 8011630]; go_process: GDP-mannose biosynthesis [goid GO:0009298] [evidence IMP] [pmid 1377774]; go_process: cell wall mannoprotein biosynthesis [goid GO:0000032] [evidence IMP] [pmid 1377774]; go_process: protein amino acid glycosylation [goid GO:0006486] [evidence IMP] [pmid 1377774] --- --- --- --- scop // a.4.1.DNA-binding domain of rap1 // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; DNA-binding domain of rap1 // 4.09999990463257 --- S0000805 // PMI40 SGDID:S0000805, Chr V from 159117-159087,158993-157735, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000016805 // cdna:Genscan chromosome:SGD1:V:157735:158859:-1 // ensembl // 11 // --- /// GENEFINDER00000019602 // cdna:GeneFinder chromosome:SGD1:V:157735:158859:-1 // ensembl // 11 // --- /// YER003C // cdna:known chromosome:SGD1:V:157735:159117:-1 gene:YER003C // ensembl // 11 // --- --- No cerevisiae_gene 1.96001346600994 -1.54134632230055 -1.28668412422799 -1.09208185745476 1.09270455890094 Max fold change below threshold 4 1.96001346600994 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776879_at YIL048W.S1 Protein involved in the retrograde transport from the Golgi complex to the ER and the endosomal membrane traffic; putative aminophospholipid translocase; member of the highly conserved Drs2 family of P-type ATPases 1.95918681963933 2220.73455810547 2947.63659667969 NEO1 6886 // intracellular protein transport // traceable author statement /// 6890 // retrograde transport, Golgi to ER // inferred from mutant phenotype /// 6895 // Golgi to endosome transport // inferred from mutant phenotype /// 6895 // Golgi to endosome transport // inferred from genetic interaction /// 6895 // Golgi to endosome transport // inferred from physical interaction 139 // Golgi membrane // inferred from direct assay /// 5768 // endosome // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // inferred from direct assay /// 5794 // Golgi apparatus // inferred from direct assay /// 30137 // COPI-coated vesicle // inferred from direct assay 4012 // phospholipid-translocating ATPase activity // inferred from sequence similarity /// 5388 // calcium-transporting ATPase activity // inferred from sequence similarity 3229.89477539063 2792.87963867188 1648.58947753906 2665.37841796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL048W /GEN=NEO1 /DB_XREF=GI:6322141 /SEG=NC_001141:+261436,264891 /DEF=ATPase that leads to neomycin-resistant protein when overexpressed /NOTE=Neo1p; go_component: COPI-coated vesicle [goid GO:0030137] [evidence IDA] [pmid 14562095]; go_function: calcium-transporting ATPase activity [goid GO:0005388] [evidence ISS] [pmid 8790914]; go_function: phospholipid-translocating ATPase activity [goid GO:0004012] [evidence ISS] [pmid 12221123]; go_process: intracellular protein transport [goid GO:0006886] [evidence TAS] [pmid 12221123] --- --- --- ec // A8A1_HUMAN // (Q9Y2Q0) Potential phospholipid-transporting ATPase IA (EC 3.6.3.1) (Chromaffin granule ATPase II) (ATPase class I type 8A member 1) // 0.0 --- S0001310 // span:947-969,1021-1043,1053-1075,1080-1102,1112-1134 // numtm:5 S0001310 // NEO1 SGDID:S0001310, Chr IX from 261436-264891, Verified ORF // sgd // 11 // --- /// GENSCAN00000016439 // cdna:Genscan chromosome:SGD1:IX:261436:264891:1 // ensembl // 11 // --- /// GENEFINDER00000019024 // cdna:GeneFinder chromosome:SGD1:IX:262135:264891:1 // ensembl // 11 // --- /// YIL048W // cdna:known chromosome:SGD1:IX:261436:264891:1 gene:YIL048W // ensembl // 11 // --- --- No cerevisiae_gene -1.5060000840104 -1.15647474766459 -1.32372723451436 -1.95918681963933 -1.2117959512301 Max fold change below threshold 4 1.95918681963933 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778451_s_at YBR191W.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl21Ap and has similarity to rat L21 ribosomal protein /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl21Bp and has similarity to rat L21 ribosomal protein 1.95860013890974 2365.85681152344 4146.8896484375 RPL21B /// RPL21A 6412 // protein biosynthesis // traceable author statement /// 30447 // filamentous growth // inferred from mutant phenotype 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 4581.0595703125 2392.76782226563 2338.94580078125 3712.7197265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR191W /GEN=RPL21A /DB_XREF=GI:6319668 /SEG=NC_001134:+606227,607097 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl21Bp and has similarity to rat L21 ribosomal protein /NOTE=Rpl21ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0000395 // RPL21A SGDID:S0000395, Chr II from 606265-606275,606664-607135, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0006000 // RPL21B SGDID:S0006000, Chr XVI from 406633-406643,407065-407536, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000021292 // cdna:Genscan chromosome:SGD1:II:606692:607135:1 // ensembl // 10 // --- /// GENEFINDER00000022147 // cdna:GeneFinder chromosome:SGD1:II:606692:607135:1 // ensembl // 10 // --- /// GENSCAN00000017127 // cdna:Genscan chromosome:SGD1:XVI:407093:407536:1 // ensembl // 10 // --- /// GENEFINDER00000020715 // cdna:GeneFinder chromosome:SGD1:XVI:407132:407536:1 // ensembl // 9 // --- /// YBR191W // cdna:known chromosome:SGD1:II:606265:607135:1 gene:YBR191W // ensembl // 11 // --- /// YPL079W // cdna:known chromosome:SGD1:XVI:406633:407536:1 gene:YPL079W // ensembl // 11 // --- --- No cerevisiae_gene 1.01368331519578 -1.91454412236907 -1.53133096218309 -1.95860013890974 -1.23388241173647 Max fold change below threshold 4 1.95860013890974 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773007_at SPBC28F2.08c.S1 --- 1.95829612314445 --- --- --- --- 8.05189895629883 7.14079236984253 15.7680025100708 6.71204328536987 0.24609400331974 0.665526986122131 0.194580003619194 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC28F2.08c /DEF=SEL1 repeat protein --- --- --- --- --- --- SPBC28F2.08c // |||SEL1 repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.09299692666025 -1.12759180484005 -1.31500811305762 1.95829612314445 -1.19961964098912 Max fold change below threshold 4 1.95829612314445 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774530_at SPAC1A6.02.S1 --- 1.95791862131711 --- --- --- --- 7.38114356994629 5.44136762619019 5.7885570526123 3.7698929309845 0.194580003619194 0.171387001872063 0.0805663987994194 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1A6.02 /DEF=WD repeat protein --- --- --- --- --- --- SPAC1A6.02 // ||SPAC23C4.21|WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.94574228641921 -1.35648683879024 -1.12935977327851 -1.27512668578005 -1.95791862131711 Max fold change below threshold 4 1.95791862131711 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778962_at SPAC4D7.01c.S1 --- 1.95763842257414 --- --- --- --- 2.27671432495117 1.16299021244049 3.58705019950867 1.35772454738617 0.753906011581421 0.870360970497131 0.533936023712158 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4D7.01c /GEN=sec71 /DEF=Sec7 domain --- --- --- --- --- --- SPAC4D7.01c // |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.86928460639732 -1.95763842257414 -1.16533838931546 1.57553811657314 -1.67686025072921 Max fold change below threshold 1 1.95763842257414 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779985_at YBR093C.S1 One of three repressible acid phosphatases, a glycoprotein that is transported to the cell surface by the secretory pathway; induced by phosphate starvation and coordinately regulated by PHO4 and PHO2 1.95752439043275 81.8668251037598 151.193309783936 PHO5 6796 // phosphate metabolism // traceable author statement /// 16036 // cellular response to phosphate starvation // traceable author statement 9277 // cell wall (sensu Fungi) // inferred from direct assay /// 30287 // periplasmic space (sensu Fungi) // non-traceable author statement 3993 // acid phosphatase activity // traceable author statement 111.876808166504 57.1521911621094 106.58145904541 190.509811401367 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR093C /GEN=PHO5 /DB_XREF=GI:6319569 /SEG=NC_001134:-429505,430908 /DEF=One of three repressible acid phosphatases, a glycoprotein that is transported to the cell surface by the secretory pathway; induced by phosphate starvation and coordinately regulated by PHO4 and PHO2 /NOTE=Pho5p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 3537693]; go_component: periplasmic space (sensu Fungi) [goid GO:0030287] [evidence NAS] [pmid 1965216]; go_function: acid phosphatase activity [goid GO:0003993] [evidence TAS] [pmid 8918192]; go_process: cellular response to phosphate starvation [goid GO:0016036] [evidence TAS] [pmid 8918192]; go_process: phosphate metabolism [goid GO:0006796] [evidence TAS] [pmid 8918192] --- --- --- --- --- --- S0000297 // PHO5 SGDID:S0000297, Chr II from 430945-429542, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021214 // cdna:Genscan chromosome:SGD1:II:429542:430945:-1 // ensembl // 11 // --- /// GENEFINDER00000022236 // cdna:GeneFinder chromosome:SGD1:II:429542:430945:-1 // ensembl // 11 // --- /// YBR093C // cdna:known chromosome:SGD1:II:429542:430945:-1 gene:YBR093C // ensembl // 11 // --- --- No cerevisiae_gene 1.48896260119312 -1.95752439043275 1.40094328138928 -1.04968358632469 1.70285347359781 Max fold change below threshold 4 1.95752439043275 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775407_at YLR325C.S1 Protein component of the large (60S) ribosomal subunit, has similarity to rat L38 ribosomal protein 1.95741071435864 1811.66687011719 2945.50756835938 RPL38 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3217.86254882813 1979.39538574219 1643.93835449219 2673.15258789063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR325C /GEN=RPL38 /DB_XREF=GI:6323357 /SEG=NC_001144:-781143,781379 /DEF=Protein component of the large (60S) ribosomal subunit, has similarity to rat L38 ribosomal protein /NOTE=Rpl38p; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004317 // RPL38 SGDID:S0004317, Chr XII from 781379-781143, reverse complement, Verified ORF // sgd // 11 // --- /// YLR325C // cdna:known chromosome:SGD1:XII:781143:781379:-1 gene:YLR325C // ensembl // 11 // --- --- No cerevisiae_gene 1.00841266535487 -1.62567952416519 -1.62336129571682 -1.95741071435864 -1.20377062027998 Max fold change below threshold 4 1.95741071435864 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779269_at SPAC630.09c.S1 --- 1.95737255495629 --- --- --- --- 0.82170969247818 0.543181419372559 0.898737609386444 1.60839200019836 0.780517995357513 0.919434010982513 0.725830018520355 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC630.09c /DEF=conserved eukaryotic protein --- --- --- --- --- --- D89234 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1483. // gb // 11 // --- /// SPAC630.09c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.39184945656104 -1.51277209265986 -1.28275328746214 1.09374103483672 1.95737255495629 Max fold change below threshold 0 1.95737255495629 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773415_at YFR017C.S1 Hypothetical protein 1.9570834768275 5000.87939453125 2664.64904785156 --- --- 5737 // cytoplasm // inferred from direct assay --- 2778.24047851563 5437.24853515625 4564.51025390625 2551.0576171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR017C /GEN=GSY1 /DB_XREF=GI:14318539 /SEG=NC_001138:-182262,182849 /DEF=Hypothetical ORF /NOTE=Yfr017cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001913 // YFR017C SGDID:S0001913, Chr VI from 182849-182262, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018535 // cdna:GeneFinder chromosome:SGD1:VI:182262:182849:-1 // ensembl // 11 // --- /// GENSCAN00000023258 // cdna:Genscan chromosome:SGD1:VI:182262:182849:-1 // ensembl // 11 // --- /// YFR017C // cdna:known chromosome:SGD1:VI:182262:182849:-1 gene:YFR017C // ensembl // 11 // --- --- No cerevisiae_gene 1.18373840794898 1.9570834768275 -1.04093736450503 1.64295002149886 -1.08905438269896 Max fold change below threshold 4 1.9570834768275 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780059_at YMR108W.S1 Acetolactate synthase, catalyses the first common step in isoleucine and valine biosynthesis and is the target of several classes of inhibitors, localizes to the mitochondria; expression of the gene is under general amino acid control 1.95629079311602 4605.32055664063 2507.26733398438 ILV2 9082 // branched chain family amino acid biosynthesis // inferred from direct assay /// 9082 // branched chain family amino acid biosynthesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5948 // acetolactate synthase complex // inferred from sequence similarity /// 5948 // acetolactate synthase complex // inferred from direct assay 3984 // acetolactate synthase activity // inferred from sequence similarity /// 3984 // acetolactate synthase activity // inferred from direct assay /// 50660 // FAD binding // inferred from direct assay 2533.94750976563 4474.9189453125 4735.72216796875 2480.58715820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR108W /GEN=ILV2 /DB_XREF=GI:6323755 /SEG=NC_001145:+484083,486146 /DEF=Acetolactate synthase, localizes in the mitochondria; expression of the gene is under general amino acid control /NOTE=Ilv2p; go_component: mitochondrion [goid GO:0005739] [evidence IPI] [pmid 10213630]; go_component: mitochondrion [goid GO:0005739] [evidence ISS] [pmid 2989783]; go_function: acetolactate synthase activity [goid GO:0003984] [evidence IDA] [pmid 10213630]; go_function: acetolactate synthase activity [goid GO:0003984] [evidence ISS] [pmid 2989783]; go_process: branched chain family amino acid biosynthesis [goid GO:0009082] [evidence IDA,IMP] [pmid 2406721] --- --- --- --- --- --- S0004714 // ILV2 SGDID:S0004714, Chr XIII from 484083-486146, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021947 // cdna:GeneFinder chromosome:SGD1:XIII:484083:486146:1 // ensembl // 11 // --- /// GENSCAN00000018802 // cdna:Genscan chromosome:SGD1:XIII:484161:486146:1 // ensembl // 11 // --- /// YMR108W // cdna:known chromosome:SGD1:XIII:484083:486146:1 gene:YMR108W // ensembl // 11 // --- --- No cerevisiae_gene 1.95629079311602 1.765987230622 -1.25755529206672 1.86891091852442 -1.02151117786208 Max fold change below threshold 4 1.95629079311602 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779850_at YPR160W.S1 Non-essential glycogen phosphorylase required for the mobilization of glycogen, activity is regulated by cyclic AMP-mediated phosphorylation, expression is regulated by stress-response elements and by the HOG MAP kinase pathway 1.95608115664526 6251.95532226563 3733.00830078125 GPH1 5980 // glycogen catabolism // inferred from mutant phenotype 5737 // cytoplasm // inferred from curator 8184 // glycogen phosphorylase activity // inferred from mutant phenotype 3831.24096679688 7494.21826171875 5009.6923828125 3634.77563476563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR160W /GEN=GPH1 /DB_XREF=GI:6325418 /SEG=NC_001148:+861300,864008 /DEF=Releases glucose-1-phosphate from glycogen /NOTE=Gph1p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 2657401]; go_function: glycogen phosphorylase activity [goid GO:0008184] [evidence IMP] [pmid 2657401]; go_process: glycogen catabolism [goid GO:0005980] [evidence IMP] [pmid 2657401] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 0.5 /// scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 0.529999971389771 --- S0006364 // GPH1 SGDID:S0006364, Chr XVI from 861302-864010, Verified ORF // sgd // 11 // --- /// GENSCAN00000017307 // cdna:Genscan chromosome:SGD1:XVI:861302:864010:1 // ensembl // 11 // --- /// GENEFINDER00000020730 // cdna:GeneFinder chromosome:SGD1:XVI:861302:864010:1 // ensembl // 11 // --- /// YPR160W // cdna:known chromosome:SGD1:XVI:861302:864010:1 gene:YPR160W // ensembl // 11 // --- --- No cerevisiae_gene -1.10797046864265 1.95608115664526 -1.22245371268375 1.30759000183715 -1.05405157065325 Max fold change below threshold 4 1.95608115664526 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776698_at YLR036C.S1 Hypothetical protein 1.95577682583615 109.183372497559 67.5302734375 --- --- --- --- 62.8056640625 114.642974853516 103.723770141602 72.2548828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR036C /GEN=MLH2 /DB_XREF=GI:6323065 /SEG=NC_001144:-221522,222133 /DEF=Hypothetical ORF /NOTE=Ylr036cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004026 // span:56-78,119-141,154-176 // numtm:3 S0004026 // YLR036C SGDID:S0004026, Chr XII from 222133-221522, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// YLR036C // cdna:known chromosome:SGD1:XII:221522:222133:-1 gene:YLR036C // ensembl // 10 // --- --- No cerevisiae_gene 1.95577682583615 1.82536044423367 1.42258077682584 1.65150343826287 1.15045169716854 Max fold change below threshold 4 1.95577682583615 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776578_at SPBPB2B2.06c.S1 --- 1.95572728756671 --- --- --- --- 3.23358726501465 3.53238654136658 2.92894411087036 1.74328911304474 0.725830018520355 0.932372987270355 0.904784977436066 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB2B2.06c /DEF=calcineurin-like phosphoesterase --- --- --- --- --- --- SPBPB2B2.06c // |||calcineurin-like phosphoesterase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.95572728756671 1.09240489025447 -1.77276017871842 -1.10401125546017 -1.85487722077667 Max fold change below threshold 3 1.95572728756671 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779619_at SPAC22F8.04.S1 --- 1.95563968738083 --- --- --- --- 8.86283111572266 17.3325042724609 14.3210515975952 12.1379661560059 0.24609400331974 0.0461426004767418 0.129638999700546 0.0375977009534836 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22F8.04 /DEF=phosphatephosphoenolpyruvate translocator (predicted) --- --- --- --- --- --- SPAC22F8.04 // |||phosphate/phosphoenolpyruvate translocator |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.83257508062443 1.95563968738083 1.94673977699327 1.61585518336118 1.36953598658482 Max fold change below threshold 4 1.95563968738083 Max fold change below threshold AAPMAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1772689_at YNL015W.S1 Cytosolic inhibitor of vacuolar proteinase B, required for efficient vacuole inheritance; with thioredoxin forms protein complex LMA1, which assists in priming SNARE molecules and promotes vacuole fusion 1.95553315240731 5288.6494140625 3059.78491210938 PBI2 30162 // regulation of proteolysis and peptidolysis // inferred from mutant phenotype /// 42144 // vacuole fusion, non-autophagic // inferred from direct assay 324 // vacuole (sensu Fungi) // inferred from physical interaction /// 5737 // cytoplasm // traceable author statement 4866 // endopeptidase inhibitor activity // inferred from direct assay 3173.86645507813 6206.60107421875 4370.69775390625 2945.70336914063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL015W /GEN=PBI2 /DB_XREF=GI:6324313 /SEG=NC_001146:+605382,605609 /DEF=Cytosolic inhibitor of vacuolar proteinase B, required for efficient vacuole inheritance; with thioredoxin forms protein complex LMA1, which assists in priming SNARE molecules and promotes vacuole fusion /NOTE=Pbi2p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 2015812]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IPI] [pmid 9657146]; go_function: endopeptidase inhibitor activity [goid GO:0004866] [evidence IDA] [pmid 2015812]; go_process: regulation of proteolysis and peptidolysis [goid GO:0030162] [evidence IMP] [pmid 2015812]; go_process: vacuole fusion, non-autophagic [goid GO:0042144] [evidence IDA] [pmid 9159115] --- --- --- --- --- --- S0004960 // PBI2 SGDID:S0004960, Chr XIV from 605383-605610, Verified ORF // sgd // 11 // --- /// GENSCAN00000020025 // cdna:Genscan chromosome:SGD1:XIV:605383:605610:1 // ensembl // 11 // --- /// GENEFINDER00000020604 // cdna:GeneFinder chromosome:SGD1:XIV:605383:605610:1 // ensembl // 11 // --- /// YNL015W // cdna:known chromosome:SGD1:XIV:605383:605610:1 gene:YNL015W // ensembl // 11 // --- --- No cerevisiae_gene -1.22646808815746 1.95553315240731 -1.00481602504528 1.37708936899762 -1.07745623280597 Max fold change below threshold 4 1.95553315240731 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769543_at SPBC1347.11.S1 --- 1.95465093425924 --- --- --- --- 8.07922840118408 15.7920713424683 13.0131177902222 5.342209815979 0.091796875 0.0107421996071935 0.0461426004767418 0.0375977009534836 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1347.11 /DEF=sequence orphan --- --- --- --- --- --- SPBC1347.11 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.35856691519594 1.95465093425924 1.39312509848985 1.61068819249063 -1.5123382793799 Max fold change below threshold 4 1.95465093425924 Max fold change below threshold AAPPPP No 4 0 APPP 1 3 0 No No 2 < x = 3
1775036_at YDR368W.S1 2-methylbutyraldehyde reductase, may be involved in isoleucine catabolism 1.95457350985208 1686.98254394531 2878.07348632813 YPR1 19568 // arabinose catabolism // inferred from direct assay /// 19568 // arabinose catabolism // inferred from mutant phenotype /// 42843 // D-xylose catabolism // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4032 // aldehyde reductase activity // inferred from direct assay /// 4033 // aldo-keto reductase activity // inferred from sequence similarity /// 16491 // oxidoreductase activity // inferred from direct assay 2881.85424804688 1474.41589355469 1899.54919433594 2874.29272460938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR368W /GEN=YPR1 /DB_XREF=GI:6320576 /SEG=NC_001136:+1213892,1214830 /DEF=2-methylbutyraldehyde reductase, may be involved in isoleucine catabolism /NOTE=Ypr1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: aldehyde reductase activity [goid GO:0004032] [evidence IDA] [pmid 11306085]; go_function: aldo-keto reductase activity [goid GO:0004033] [evidence ISS] [pmid 11306085]; go_function: oxidoreductase activity [goid GO:0016491] [evidence IDA] [pmid 11456752]; go_process: D-xylose metabolism [goid GO:0042732] [evidence IDA] [pmid 12271459]; go_process: arabinose metabolism [goid GO:0019566] [evidence IDA,IMP] [pmid 12271459] --- --- --- --- --- --- S0002776 // YPR1 SGDID:S0002776, Chr IV from 1213894-1214832, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023840 // cdna:GeneFinder chromosome:SGD1:IV:1213894:1214832:1 // ensembl // 10 // --- /// GENSCAN00000025391 // cdna:Genscan chromosome:SGD1:IV:1213894:1214832:1 // ensembl // 10 // --- /// YDR368W // cdna:known chromosome:SGD1:IV:1213894:1214832:1 gene:YDR368W // ensembl // 10 // --- --- No cerevisiae_gene -1.62204480093903 -1.95457350985208 1.06579177106211 -1.51712535618449 -1.00263074229453 Max fold change below threshold 4 1.95457350985208 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773929_at YNL128W.S1 Homolog of human tumor suppressor gene PTEN/MMAC1/TEP1 that has lipid phosphatase activity and is linked to the phosphatidylinositol signaling pathway; plays a role in normal sporulation 1.95430994881238 91.433479309082 127.376686096191 TEP1 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype /// 46856 // phosphoinositide dephosphorylation // inferred from direct assay /// 48017 // inositol lipid-mediated signaling // inferred from mutant phenotype --- 4437 // inositol or phosphatidylinositol phosphatase activity // inferred from direct assay 119.540588378906 91.3916625976563 91.4752960205078 135.212783813477 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL128W /GEN=TEP1 /DB_XREF=GI:6324201 /SEG=NC_001146:+382359,383663 /DEF=Similar to human tumor suppressor gene known as TEP1, MMAC1 and PTEN1 /NOTE=Tep1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: inositol/phosphatidylinositol phosphatase activity [goid GO:0004437] [evidence IDA] [pmid 11070083]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence IMP] [pmid 11070083] --- --- --- --- --- --- S0005072 // TEP1 SGDID:S0005072, Chr XIV from 382359-383663, Verified ORF // sgd // 11 // --- /// GENSCAN00000019930 // cdna:Genscan chromosome:SGD1:XIV:382425:383663:1 // ensembl // 11 // --- /// GENEFINDER00000020609 // cdna:GeneFinder chromosome:SGD1:XIV:382449:383663:1 // ensembl // 11 // --- /// YNL128W // cdna:known chromosome:SGD1:XIV:382359:383663:1 gene:YNL128W // ensembl // 11 // --- --- No cerevisiae_gene -1.95430994881238 -1.30800321365389 -1.04844012951913 -1.30680734120944 1.13110354940612 Max fold change below threshold 4 1.95430994881238 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772744_at YCL045C.S1 Hypothetical protein 1.95412809238642 1041.94158935547 1921.82836914063 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 1949.59008789063 1086.20544433594 997.677734375 1894.06665039063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL045C /GEN=APA1 /DB_XREF=GI:6319804 /SEG=NC_001135:-44623,46905 /DEF=Hypothetical ORF /NOTE=Ycl045cp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000550 // span:7-26,730-749 // numtm:2 S0000550 // YCL045C SGDID:S0000550, Chr III from 46905-44623, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022431 // cdna:Genscan chromosome:SGD1:III:44623:46905:-1 // ensembl // 11 // --- /// GENEFINDER00000023304 // cdna:GeneFinder chromosome:SGD1:III:44623:46905:-1 // ensembl // 11 // --- /// YCL045C // cdna:known chromosome:SGD1:III:44623:46905:-1 gene:YCL045C // ensembl // 11 // --- --- No cerevisiae_gene -1.03105174166976 -1.79486311549702 -1.04468527982068 -1.95412809238642 -1.02931440532388 Max fold change below threshold 4 1.95412809238642 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772195_at YPR169W.S1 Nucleolar protein of unknown function, exhibits a physical interaction with Bre1p 1.95403129997135 1006.15451049805 1848.07208251953 --- 6513 // protein monoubiquitination // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 1901.04907226563 1039.42333984375 972.885681152344 1795.09509277344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR169W /GEN=NUT2 /DB_XREF=GI:6325427 /SEG=NC_001148:+878618,880162 /DEF=Nucleolar protein of unknown function, exhibits a physical interaction with Bre1p /NOTE=Ypr169wp --- --- --- --- --- --- S0006373 // JIP5 SGDID:S0006373, Chr XVI from 878620-880164, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000021042 // cdna:GeneFinder chromosome:SGD1:XVI:878686:880164:1 // ensembl // 11 // --- /// YPR169W // cdna:known chromosome:SGD1:XVI:878620:880164:1 gene:YPR169W // ensembl // 11 // --- --- No cerevisiae_gene -1.3649692352851 -1.8289459158685 -1.17420915926323 -1.95403129997135 -1.05902415973322 Max fold change below threshold 4 1.95403129997135 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777632_at YLR129W.S1 Nucleolar protein, specifically associated with the U3 snoRNA, part of the large ribonucleoprotein complex known as the small subunit (SSU) processome, required for 18S rRNA biogenesis, part of the active pre-rRNA processing complex 1.9536866950509 197.752372741699 376.679702758789 DIP2 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction 30515 // snoRNA binding // inferred from physical interaction 319.307983398438 167.736358642578 227.76838684082 434.051422119141 0.000244141003349796 0.00195312988944352 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR129W /GEN=DIP2 /DB_XREF=GI:6323158 /SEG=NC_001144:+399658,402489 /DEF=Nucleolar protein, specifically associated with the U3 snoRNA, part of the large ribonucleoprotein complex known as the small subunit (SSU) processome, required for 18S rRNA biogenesis, part of the active pre-rRNA processing complex /NOTE=Dip2p; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: snoRNA binding [goid GO:0030515] [evidence IPI] [pmid 12068309]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP,IPI] [pmid 12068309] --- --- --- --- --- --- S0004119 // DIP2 SGDID:S0004119, Chr XII from 399658-402489, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024809 // cdna:GeneFinder chromosome:SGD1:XII:399658:402489:1 // ensembl // 11 // --- /// GENSCAN00000017918 // cdna:Genscan chromosome:SGD1:XII:401416:402489:1 // ensembl // 11 // --- /// YLR129W // cdna:known chromosome:SGD1:XII:399658:402489:1 gene:YLR129W // ensembl // 11 // --- --- No cerevisiae_gene 1.9536866950509 -1.90363011324716 -1.21927556292136 -1.40189772526067 1.35935035979832 Max fold change below threshold 4 1.9536866950509 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772828_at YMR014W.S1 Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern 1.95313963285905 126.07986831665 204.65535736084 BUD22 282 // bud site selection // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 208.171630859375 145.57666015625 106.583076477051 201.139083862305 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR014W /GEN=BUD22 /DB_XREF=GI:6323656 /SEG=NC_001145:+298867,300426 /DEF=Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern /NOTE=Bud22p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11452010]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: bud site selection [goid GO:0000282] [evidence IMP] [pmid 11452010] --- --- --- --- --- --- S0004616 // BUD22 SGDID:S0004616, Chr XIII from 298867-300426, Verified ORF // sgd // 11 // --- /// GENSCAN00000018728 // cdna:Genscan chromosome:SGD1:XIII:299227:300426:1 // ensembl // 11 // --- /// GENEFINDER00000021870 // cdna:GeneFinder chromosome:SGD1:XIII:299227:300426:1 // ensembl // 11 // --- /// YMR014W // cdna:known chromosome:SGD1:XIII:298867:300426:1 gene:YMR014W // ensembl // 11 // --- --- No cerevisiae_gene 1.55932109219148 -1.42997943925861 -1.37253226388502 -1.95313963285905 -1.03496360260786 Max fold change below threshold 4 1.95313963285905 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779421_at SPBC16C6.03c.S1 --- 1.95305078162422 --- --- --- --- 10.3626317977905 8.14522361755371 15.4791860580444 8.35092163085938 0.0952147990465164 0.149657994508743 0.00585938012227416 0.0561522990465164 A A P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16C6.03c /DEF=sequence orphan --- --- --- --- --- --- SPBC16C6.03c // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.95305078162422 -1.27223416867992 -1.09015733831626 1.49375046417695 -1.24089678431387 Max fold change below threshold 4 1.95305078162422 Max fold change below threshold APAAPM No 4 0 AAPM 2 1 1 No No x = 1
1777655_at YGR278W.S1 Essential protein, component of a complex containing Cef1p, has similarity to S. pombe Cwf22p; putative spliceosomal component, based on computational analysis of large-scale protein-protein interaction data 1.95294708242358 92.2091598510742 179.781089782715 CWC22 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction /// 398 // nuclear mRNA splicing, via spliceosome // RCA 5681 // spliceosome complex // inferred from physical interaction --- 158.612747192383 81.2171249389648 103.201194763184 200.949432373047 0.000732421991415322 0.000244141003349796 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR278W /GEN=CWC22 /DB_XREF=GI:6321717 /SEG=NC_001139:+1046736,1048469 /DEF=Essential protein, component of a complex containing Cef1p, has similarity to S. pombe Cwf22p; putative spliceosomal component, based on computational analysis of large-scale protein-protein interaction data /NOTE=Cwc22p; go_component: spliceosome complex [goid GO:0005681] [evidence IPI] [pmid 11884590]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 11884590]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0003510 // CWC22 SGDID:S0003510, Chr VII from 1046737-1048470, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021767 // cdna:GeneFinder chromosome:SGD1:VII:1046737:1048470:1 // ensembl // 11 // --- /// GENSCAN00000019555 // cdna:Genscan chromosome:SGD1:VII:1046836:1048470:1 // ensembl // 11 // --- /// YGR278W // cdna:known chromosome:SGD1:VII:1046737:1048470:1 gene:YGR278W // ensembl // 11 // --- --- No cerevisiae_gene -1.64265502205212 -1.95294708242358 1.18710177977642 -1.53692743147356 1.26691855434112 Max fold change below threshold 4 1.95294708242358 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773928_at SPBC660.16.S1 --- 1.95268027626815 --- --- --- --- 18.4571895599365 20.6297588348389 14.0960750579834 12.858118057251 0.00415039015933871 0.00195312988944352 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC660.16 /DEF=phosphogluconate dehydrogenase, decarboxylating (predicted) --- --- --- --- --- --- D89161 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0651. // gb // 11 // --- /// SPBC660.16 // |||phosphogluconate dehydrogenase, decarboxylating|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.49658469571245 1.11770856380097 -1.95268027626815 -1.30938502271121 -1.43545031067187 Max fold change below threshold 4 1.95268027626815 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776974_at SPBC354.07c.S1 --- 1.95257621430752 --- --- --- --- 4.37555170059204 4.93940114974976 8.54359817504883 5.92761087417603 0.5 0.398925989866257 0.171387001872063 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC354.07c /DEF=oxysterol binding protein (predicted) --- --- --- --- --- --- SPBC354.07c // |||oxysterol binding protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.21810298972439 1.12886362400458 1.13535247772035 1.95257621430752 1.35471165233266 Max fold change below threshold 4 1.95257621430752 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777442_at YGL087C.S1 Protein involved in error-free postreplication DNA repair; forms a heteromeric complex with Ubc13p that has a ubiquitin-conjugating activity; cooperates with chromatin-associated RING finger proteins, Rad18p and Rad5p 1.95200985548973 1950.60211181641 1062.6181640625 MMS2 6281 // DNA repair // inferred from mutant phenotype /// 6281 // DNA repair // inferred from genetic interaction /// 6511 // ubiquitin-dependent protein catabolism // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4840 // ubiquitin conjugating enzyme activity // inferred from physical interaction 1014.16748046875 1979.66491699219 1921.53930664063 1111.06884765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL087C /GEN=MMS2 /DB_XREF=GI:6321351 /SEG=NC_001139:-346407,346905 /DEF=Member of error-free postreplication DNA repair pathway /NOTE=Mms2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10880451]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10880451]; go_function: ubiquitin conjugating enzyme activity [goid GO:0004840] [evidence IPI] [pmid 10089880]; go_process: DNA repair [goid GO:0006281] [evidence IGI,IMP] [pmid 9576943]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence IPI] [pmid 10089880] --- --- --- --- --- --- S0003055 // MMS2 SGDID:S0003055, Chr VII from 346907-346897,346811-346409, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021482 // cdna:GeneFinder chromosome:SGD1:VII:346409:346711:-1 // ensembl // 9 // --- /// YGL087C // cdna:known chromosome:SGD1:VII:346409:346907:-1 gene:YGL087C // ensembl // 11 // --- --- No cerevisiae_gene -1.42667133176351 1.95200985548973 1.29812868467488 1.89469623474072 1.09554769705563 Max fold change below threshold 4 1.95200985548973 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775199_at YBR248C.S1 Imidazole glycerol phosphate synthase (glutamine amidotransferase:cyclase), catalyzes the fifth and sixth steps of histidine biosynthesis and also produces 5-aminoimidazole-4-carboxamide ribotide (AICAR), a purine precursor 1.95150864233008 323.542617797852 593.496490478516 HIS7 105 // histidine biosynthesis // traceable author statement /// 9127 // purine nucleoside monophosphate biosynthesis // traceable author statement 5622 // intracellular // traceable author statement 107 // imidazoleglycerol phosphate synthase activity // traceable author statement /// 107 // imidazoleglycerol phosphate synthase activity // inferred from direct assay 536.766418457031 275.052032470703 372.033203125 650.2265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR248C /GEN=HIS7 /DB_XREF=GI:6319725 /SEG=NC_001134:-714764,716422 /DEF=Imidazole glycerol phosphate synthase (glutamine amidotransferase:cyclase), catalyzes the fifth and sixth steps of histidine biosynthesis and also produces 5-aminoimidazole-4-carboxamide ribotide (AICAR), a purine precursor /NOTE=His7p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 8852895]; go_function: imidazoleglycerol phosphate synthase activity [goid GO:0000107] [evidence IDA] [pmid 10733892]; go_function: imidazoleglycerol phosphate synthase activity [goid GO:0000107] [evidence TAS] [pmid 8852895]; go_process: histidine biosynthesis [goid GO:0000105] [evidence TAS] [pmid 8852895]; go_process: purine nucleoside monophosphate biosynthesis [goid GO:0009127] [evidence TAS] [pmid 8939895] --- --- --- --- --- --- S0000452 // HIS7 SGDID:S0000452, Chr II from 716460-714802, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021337 // cdna:Genscan chromosome:SGD1:II:714802:716460:-1 // ensembl // 11 // --- /// GENEFINDER00000022349 // cdna:GeneFinder chromosome:SGD1:II:714802:716460:-1 // ensembl // 11 // --- /// YBR248C // cdna:known chromosome:SGD1:II:714802:716460:-1 gene:YBR248C // ensembl // 11 // --- --- No cerevisiae_gene 1.65491408661963 -1.95150864233008 1.17872980486063 -1.44279170232202 1.21137712819128 Max fold change below threshold 4 1.95150864233008 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770271_at YER140W.S1 Hypothetical protein 1.95127550429637 149.623458862305 249.378318786621 --- --- 5739 // mitochondrion // inferred from direct assay --- 286.706939697266 146.933090209961 152.313827514648 212.049697875977 0.000732421991415322 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER140W /GEN=GDI1 /DB_XREF=GI:6320988 /SEG=NC_001137:+451560,453230 /DEF=Hypothetical ORF /NOTE=Yer140wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000942 // span:89-111,223-245,329-351,392-411,426-448 // numtm:5 S0000942 // YER140W SGDID:S0000942, Chr V from 451560-453230, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016919 // cdna:Genscan chromosome:SGD1:V:451560:453230:1 // ensembl // 11 // --- /// YER140W // cdna:known chromosome:SGD1:V:451560:453230:1 gene:YER140W // ensembl // 11 // --- --- No cerevisiae_gene -1.27276137545501 -1.95127550429637 1.10563094763036 -1.88234347711925 -1.35207426640596 Max fold change below threshold 4 1.95127550429637 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775765_at YMR101C.S1 Cis-prenyltransferase involved in synthesis of long-chain dolichols (19-22 isoprene units; as opposed to Rer2p which synthesizes shorter-chain dolichols); localizes to lipid bodies; transcription is induced during stationary phase 1.95112259573979 28.4262056350708 35.5869007110596 SRT1 6486 // protein amino acid glycosylation // inferred from mutant phenotype /// 6486 // protein amino acid glycosylation // inferred from direct assay 5811 // lipid particle // inferred from direct assay 45547 // dehydrodolichyl diphosphate synthase activity // inferred from sequence similarity /// 45547 // dehydrodolichyl diphosphate synthase activity // inferred from direct assay 24.1175346374512 36.8913955688477 19.9610157012939 47.056266784668 0.00585938012227416 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR101C /GEN=SRT1 /DB_XREF=GI:6323748 /SEG=NC_001145:-468444,469475 /DEF=cis-prenyltransferase involved in dolichol synthesis /NOTE=Srt1p; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 11442630]; go_function: prenyltransferase activity [goid GO:0004659] [evidence IDA,ISS] [pmid 11442630]; go_process: protein amino acid glycosylation [goid GO:0006486] [evidence IDA,IMP] [pmid 11442630] --- --- --- --- --- S0004707 // span:36-58 // numtm:1 S0004707 // SRT1 SGDID:S0004707, Chr XIII from 469475-468444, reverse complement, Verified ORF // sgd // 11 // --- /// YMR101C // cdna:known chromosome:SGD1:XIII:468444:469475:-1 gene:YMR101C // ensembl // 11 // --- --- No cerevisiae_gene -1.1543056319593 1.52965036117583 1.14694286084406 -1.20823183541145 1.95112259573979 Max fold change below threshold 4 1.95112259573979 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1777745_at SPAC222.13c.S1 --- 1.95109884902424 --- --- --- --- 7.55370759963989 7.49472570419312 5.5120210647583 3.87151455879211 0.219482004642487 0.194580003619194 0.432372987270355 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC222.13c /DEF=6-phosphofructo-2-kinase (predicted) --- --- --- --- --- --- SPAC222.13c // |||6-phosphofructo-2-kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.33647624676085 -1.0078697870709 1.40032635003513 -1.37040615608952 -1.95109884902424 Max fold change below threshold 4 1.95109884902424 Max fold change below threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1770339_at YKL081W.S1 Translation elongation factor EF-1 gamma 1.95084244135206 1570.33648681641 1854.35083007813 TEF4 6414 // translational elongation // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5840 // ribosome // traceable author statement /// 5853 // eukaryotic translation elongation factor 1 complex // inferred from sequence similarity 3746 // translation elongation factor activity // traceable author statement 1877.82568359375 1561.890625 1578.78234863281 1830.8759765625 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL081W /GEN=TEF4 /DB_XREF=GI:6322769 /SEG=NC_001143:+282536,284100 /DEF=Translation elongation factor EF-1gamma /NOTE=Tef4p; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 9841679]; go_function: translation elongation factor activity [goid GO:0003746] [evidence TAS] [pmid 9841679]; go_process: translational elongation [goid GO:0006414] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0001564 // TEF4 SGDID:S0001564, Chr XI from 282536-282740,283067-284100, intron sequence removed, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023084 // cdna:GeneFinder chromosome:SGD1:XI:283174:284100:1 // ensembl // 10 // --- /// YKL081W // cdna:known chromosome:SGD1:XI:282536:284100:1 gene:YKL081W // ensembl // 10 // --- GENSCAN00000018356 // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene 1.95084244135206 -1.20227732565701 -1.41500191142539 -1.18941390826918 -1.02564330278635 Max fold change below threshold 4 1.95084244135206 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777146_at YAL056W.S1 Proposed beta subunit of the heterotrimeric G protein that interacts with the receptor Grp1p, has signaling role in response to nutrients; involved in regulation of pseudohyphal growth through cAMP levels; homolog of Gpb1p 1.95070508366802 744.982238769531 1238.90063476563 GPB2 7165 // signal transduction // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 4871 // signal transducer activity // inferred from physical interaction 1232.80822753906 631.980834960938 857.983642578125 1244.99304199219 0.000244141003349796 0.00292969006113708 0.00122069998178631 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL056W /GEN=GPB2 /DB_XREF=GI:41629666 /SEG=NC_001133:+39260,41902 /DEF=Proposed beta subunit of the heterotrimeric G protein that interacts with the receptor Grp1p, has signaling role in response to nutrients; involved in regulation of pseudohyphal growth through cAMP levels; homolog of Gpb1p /NOTE=Gpb2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: signal transducer activity [goid GO:0004871] [evidence IPI] [pmid 12150916]; go_process: signal transduction [goid GO:0007165] [evidence IPI] [pmid 12150916] --- --- --- --- --- --- S0000052 // GPB2 SGDID:S0000052, Chr I from 39260-41902, Verified ORF // sgd // 11 // --- /// GENSCAN00000020329 // cdna:Genscan chromosome:SGD1:I:39260:41902:1 // ensembl // 11 // --- /// GENEFINDER00000018245 // cdna:GeneFinder chromosome:SGD1:I:39575:41902:1 // ensembl // 11 // --- /// YAL056W // cdna:known chromosome:SGD1:I:39260:41902:1 gene:YAL056W // ensembl // 11 // --- --- No cerevisiae_gene -1.911777066092 -1.95070508366802 1.30342785764962 -1.43686681931912 1.00988378742203 Max fold change below threshold 4 1.95070508366802 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773369_at YML086C.S1 D-Arabinono-1,4-lactone oxidase, catalyzes the final step in biosynthesis of D-erythroascorbic acid, which is protective against oxidative stress 1.95046410816061 1227.60000610352 1658.55548095703 ALO1 6979 // response to oxidative stress // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 3885 // D-arabinono-1,4-lactone oxidase activity // inferred from direct assay 1634.80737304688 838.163269042969 1617.03674316406 1682.30358886719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML086C /GEN=ALO1 /DB_XREF=GI:6323553 /SEG=NC_001145:-95791,97371 /DEF=D-Arabinono-1,4-lactone oxidase, catalyzes the final step in biosynthesis of D-erythroascorbic acid, which is protective against oxidative stress /NOTE=Alo1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 10094636]; go_function: D-arabinono-1,4-lactone oxidase activity [goid GO:0003885] [evidence IDA] [pmid 10094636]; go_process: response to oxidative stress [goid GO:0006979] [evidence IMP] [pmid 10094636] --- --- --- --- --- --- S0004551 // ALO1 SGDID:S0004551, Chr XIII from 97371-95791, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018645 // cdna:Genscan chromosome:SGD1:XIII:95791:97191:-1 // ensembl // 11 // --- /// GENEFINDER00000021837 // cdna:GeneFinder chromosome:SGD1:XIII:95791:97371:-1 // ensembl // 11 // --- /// YML086C // cdna:known chromosome:SGD1:XIII:95791:97371:-1 gene:YML086C // ensembl // 11 // --- --- No cerevisiae_gene -1.32165304256656 -1.95046410816061 1.20074300671234 -1.01098962652391 1.02905309616496 Max fold change below threshold 4 1.95046410816061 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775257_at YBL045C.S1 Core subunit of the ubiquinol-cytochrome c reductase complex (bc1 complex), which is a component of the mitochondrial inner membrane electron transport chain 1.95006248609043 7576.0400390625 4454.09057617188 COR1 9060 // aerobic respiration // inferred from mutant phenotype 5750 // respiratory chain complex III (sensu Eukaryota) // inferred from direct assay 8121 // ubiquinol-cytochrome-c reductase activity // inferred from direct assay 4791.69140625 9344.09765625 5807.982421875 4116.48974609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL045C /GEN=COR1 /DB_XREF=GI:6319426 /SEG=NC_001134:-134108,135481 /DEF=Core subunit of the ubiquinol-cytochrome c reductase complex (bc1 complex), which is a component of the mitochondrial inner membrane electron transport chain /NOTE=Cor1p; go_component: respiratory chain complex III (sensu Eukarya) [goid GO:0005750] [evidence IDA] [pmid 3023384]; go_function: ubiquinol-cytochrome-c reductase activity [goid GO:0008121] [evidence IDA] [pmid 3023384]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 2174874] --- --- --- --- --- --- S0000141 // COR1 SGDID:S0000141, Chr II from 135519-134146, reverse complement, Verified ORF // sgd // 11 // --- /// YBL045C // cdna:known chromosome:SGD1:II:134146:135519:-1 gene:YBL045C // ensembl // 11 // --- GENSCAN00000021102 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.18197940379404 1.95006248609043 -1.20238320596265 1.21209442125163 -1.16402364679688 Max fold change below threshold 4 1.95006248609043 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772007_at YIL029C.S1 Hypothetical protein 1.94969950050245 102.96216583252 190.444229125977 --- --- --- --- 173.456466674805 88.9657440185547 116.958587646484 207.431991577148 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL029C /GEN=SSM4 /DB_XREF=GI:6322160 /SEG=NC_001141:-300827,301255 /DEF=Hypothetical ORF /NOTE=Yil029cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001291 // span:28-50,88-110 // numtm:2 S0001291 // YIL029C SGDID:S0001291, Chr IX from 301255-300827, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// YIL029C // cdna:known chromosome:SGD1:IX:300827:301255:-1 gene:YIL029C // ensembl // 10 // --- GENEFINDER00000019009 // ensembl // 2 // Cross Hyb Matching Probes No cerevisiae_gene -1.29872579664843 -1.94969950050245 1.8702592964962 -1.48305883445762 1.19587349813853 Max fold change below threshold 4 1.94969950050245 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773593_at YBL020W.S1 Flippase, essential integral membrane protein that is required for translocation of Man5GlcNac2-PP-Dol from the cytoplasmic side to the lumenal side of the ER membrane; mutation is suppressed by expression human p53 protein 1.94951408707286 650.023834228516 1159.11694335938 RFT1 6487 // N-linked glycosylation // inferred from mutant phenotype /// 15772 // oligosaccharide transport // inferred from mutant phenotype 5789 // endoplasmic reticulum membrane // inferred from direct assay 15157 // oligosaccharide transporter activity // inferred from mutant phenotype 1123.11608886719 576.100524902344 723.947143554688 1195.11779785156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL020W /GEN=RFT1 /DB_XREF=GI:6319451 /SEG=NC_001134:+182366,184090 /DEF=encodes a flippase that is required for translocation of Man5GlcNac2-PP-Dol from the cytoplasmic side to the lumenal side of the ER membrane /NOTE=Rft1p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 11807558]; go_function: oligosaccharide transporter activity [goid GO:0015157] [evidence IMP] [pmid 11807558]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IMP] [pmid 11807558]; go_process: oligosaccharide transport [goid GO:0015772] [evidence IMP] [pmid 11807558] --- --- --- --- --- S0000116 // span:21-43,48-70,111-133,148-170,182-204,219-241,375-397,412-434,439-461,471-490,510-529,534-553 // numtm:12 S0000116 // RFT1 SGDID:S0000116, Chr II from 182404-184128, Verified ORF // sgd // 11 // --- /// GENSCAN00000021122 // cdna:Genscan chromosome:SGD1:II:182485:184128:1 // ensembl // 11 // --- /// GENEFINDER00000022275 // cdna:GeneFinder chromosome:SGD1:II:182485:184128:1 // ensembl // 11 // --- /// YBL020W // cdna:known chromosome:SGD1:II:182404:184128:1 gene:YBL020W // ensembl // 11 // --- --- No cerevisiae_gene 1.08962871527374 -1.94951408707286 1.01998985497307 -1.55137857627633 1.06410887502912 Max fold change below threshold 4 1.94951408707286 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778369_at SPBC409.10.S1 --- 1.9493791178087 --- --- --- --- 1.05688393115997 1.29919445514679 0.808331787586212 0.542164385318756 0.919434010982513 0.969726979732513 0.995850026607513 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC409.10 /GEN=ade7 /DEF=phosphoribosylamidoimidazole-succinocarboxamide synthase (putative) --- --- --- --- --- --- SPBC409.10 // |ade7||phosphoribosylamidoimidazolesuccinocarboxamide synthase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.69807546652665 1.22926881263193 -1.93560306817774 -1.30748777592425 -1.9493791178087 Max fold change below threshold 0 1.9493791178087 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773528_at YOR205C.S1 The authentic, non-tagged protein was localized to the mitochondria 1.94908106676014 399.052795410156 785.894927978516 --- --- 5739 // mitochondrion // inferred from direct assay --- 772.765258789063 396.476715087891 401.628875732422 799.024597167969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR205C /GEN=DED1 /DB_XREF=GI:6324779 /SEG=NC_001147:-725564,727234 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Yor205cp --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 1.89999997615814 --- S0005731 // FMP38 SGDID:S0005731, Chr XV from 727234-725564, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017621 // cdna:Genscan chromosome:SGD1:XV:725564:727234:-1 // ensembl // 11 // --- /// YOR205C // cdna:known chromosome:SGD1:XV:725564:727234:-1 gene:YOR205C // ensembl // 11 // --- --- No cerevisiae_gene -1.85177288326373 -1.94908106676014 1.36805885418403 -1.92407793732417 1.03398100274339 Max fold change below threshold 4 1.94908106676014 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780187_at YLL023C.S1 Hypothetical protein 1.94893939575999 3718.80908203125 4170.28479003906 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 4751.85302734375 4214.86181640625 3222.75634765625 3588.71655273438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL023C /GEN=SSA2 /DB_XREF=GI:6323005 /SEG=NC_001144:-97996,98835 /DEF=Hypothetical ORF /NOTE=Yll023cp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003946 // span:33-52,57-79,121-143,177-199,204-221 // numtm:5 S0003946 // YLL023C SGDID:S0003946, Chr XII from 98835-97996, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017706 // cdna:Genscan chromosome:SGD1:XII:97996:98835:-1 // ensembl // 11 // --- /// GENEFINDER00000024559 // cdna:GeneFinder chromosome:SGD1:XII:97996:98835:-1 // ensembl // 11 // --- /// YLL023C // cdna:known chromosome:SGD1:XII:97996:98835:-1 gene:YLL023C // ensembl // 11 // --- --- No cerevisiae_gene -1.94893939575999 -1.12740422683545 -1.18516635393829 -1.47446859605118 -1.32410931805777 Max fold change below threshold 4 1.94893939575999 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774807_at YHR108W.S1 Golgi-localized protein with homology to gamma-adaptin, interacts with and regulates Arf1p and Arf2p in a GTP-dependent manner in order to facilitate traffic through the late Golgi 1.94878629817446 1720.65270996094 970.296783447266 GGA2 6896 // Golgi to vacuole transport // inferred from mutant phenotype /// 6896 // Golgi to vacuole transport // inferred from physical interaction 5802 // Golgi trans face // inferred from direct assay --- 959.754638671875 1570.94873046875 1870.35668945313 980.838928222656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR108W /GEN=GGA2 /DB_XREF=GI:6321900 /SEG=NC_001140:+328305,330062 /DEF=Golgi-localized protein with homology to gamma-adaptin, interacts with and regulates Arf1p and Arf2p in a GTP-dependent manner in order to facilitate traffic through the late Golgi /NOTE=Gga2p; go_component: Golgi trans face [goid GO:0005802] [evidence IDA] [pmid 10747088]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi to vacuole transport [goid GO:0006896] [evidence IMP,IPI] [pmid 10747088] --- --- --- --- --- --- S0001150 // GGA2 SGDID:S0001150, Chr VIII from 328305-330062, Verified ORF // sgd // 11 // --- /// GENSCAN00000016645 // cdna:Genscan chromosome:SGD1:VIII:328410:330062:1 // ensembl // 11 // --- /// GENEFINDER00000020126 // cdna:GeneFinder chromosome:SGD1:VIII:328410:330062:1 // ensembl // 11 // --- /// YHR108W // cdna:known chromosome:SGD1:VIII:328305:330062:1 gene:YHR108W // ensembl // 11 // --- --- No cerevisiae_gene 1.32864641562085 1.6368232745847 -1.02344317514175 1.94878629817446 1.02196841640688 Max fold change below threshold 4 1.94878629817446 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773132_at YOR126C.S1 Isoamyl acetate-hydrolyzing esterase, required in balance with alcohol acetyltransferase to maintain optimal amounts of isoamyl acetate, which is particularly important in sake brewing 1.94798107948993 525.622207641602 598.065551757813 IAH1 6083 // acetate metabolism // inferred from direct assay --- 16788 // hydrolase activity, acting on ester bonds // inferred from direct assay 576.27490234375 475.611846923828 575.632568359375 619.856201171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR126C /GEN=IAH1 /DB_XREF=GI:6324700 /SEG=NC_001147:-559961,560677 /DEF=Isoamyl acetate-hydrolyzing esterase, required in balance with alcohol acetyltransferase to maintain optimal amounts of isoamyl acetate, which is particularly important in sake brewing /NOTE=Iah1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: hydrolase activity, acting on ester bonds [goid GO:0016788] [evidence IDA] [pmid 10855721]; go_process: acetate metabolism [goid GO:0006083] [evidence IDA] [pmid 10855721] --- --- --- --- --- --- S0005652 // IAH1 SGDID:S0005652, Chr XV from 560677-559961, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017554 // cdna:Genscan chromosome:SGD1:XV:559961:560677:-1 // ensembl // 11 // --- /// GENEFINDER00000022864 // cdna:GeneFinder chromosome:SGD1:XV:559961:560677:-1 // ensembl // 11 // --- /// YOR126C // cdna:known chromosome:SGD1:XV:559961:560677:-1 gene:YOR126C // ensembl // 11 // --- --- No cerevisiae_gene -1.94798107948993 -1.21164959634835 -1.14068043437657 -1.00111587498637 1.07562588384619 Max fold change below threshold 4 1.94798107948993 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777575_at YJR115W.S1 Hypothetical protein 1.94754140625881 3288.11572265625 1855.78002929688 --- --- --- --- 1861.70361328125 3625.74487304688 2950.48657226563 1849.8564453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR115W /GEN=RSM7 /DB_XREF=GI:6322575 /SEG=NC_001142:+639857,640366 /DEF=Hypothetical ORF /NOTE=Yjr115wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003876 // YJR115W SGDID:S0003876, Chr X from 639857-640366, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024223 // cdna:Genscan chromosome:SGD1:X:640073:640366:1 // ensembl // 10 // --- /// GENEFINDER00000024541 // cdna:GeneFinder chromosome:SGD1:X:640073:640366:1 // ensembl // 10 // --- /// YJR115W // cdna:known chromosome:SGD1:X:639857:640366:1 gene:YJR115W // ensembl // 11 // --- --- No cerevisiae_gene 1.76458224980323 1.94754140625881 -1.01255788600797 1.58483152270699 -1.00640437153854 Max fold change below threshold 4 1.94754140625881 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-Scv2-r2-P1-cre-3_s_at AFFX-Scv2-r2-P1-cre-3 --- 1.94744333420339 --- --- --- --- 9005.609375 10200.1689453125 4624.32421875 4710.232421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1032-1270 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. --- --- --- --- --- --- AFFX-Scv2-r2-P1-cre-3 // --- // affx // --- // --- --- AFFX_control No -1.56866862316249 1.13264616757958 -1.501926157319 -1.94744333420339 -1.911924628852 Max fold change below threshold 4 1.94744333420339 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780037_at YGR165W.S1 Mitochondrial ribosomal protein of the small subunit 1.94732716680718 428.692993164063 752.370513916016 MRPS35 6412 // protein biosynthesis // inferred from curator /// 9060 // aerobic respiration // inferred from expression pattern /// 9060 // aerobic respiration // inferred from mutant phenotype 5763 // mitochondrial small ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // inferred from physical interaction 687.963684082031 353.2861328125 504.099853515625 816.77734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR165W /GEN=MRPS35 /DB_XREF=GI:6321604 /SEG=NC_001139:+829119,830156 /DEF=Mitochondrial ribosomal protein of the small subunit /NOTE=Mrps35p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IPI] [pmid 12392552]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IPI] [pmid 12392552]; go_process: aerobic respiration [goid GO:0009060] [evidence IEP,IMP] [pmid 10929718]; go_process: protein biosynthesis [goid GO:0006412] [evidence IC] [pmid 12392552] --- --- --- --- scop // a.4.5.Forkhead DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Forkhead DNA-binding domain // 0.310000002384186 --- S0003397 // MRPS35 SGDID:S0003397, Chr VII from 829121-830158, Verified ORF // sgd // 11 // --- /// GENSCAN00000019470 // cdna:Genscan chromosome:SGD1:VII:829121:830158:1 // ensembl // 11 // --- /// GENEFINDER00000021690 // cdna:GeneFinder chromosome:SGD1:VII:829121:830158:1 // ensembl // 11 // --- /// YGR165W // cdna:known chromosome:SGD1:VII:829121:830158:1 gene:YGR165W // ensembl // 11 // --- --- No cerevisiae_gene 1.1219868843785 -1.94732716680718 1.10565778744574 -1.36473692520267 1.18723903986276 Max fold change below threshold 4 1.94732716680718 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772963_at YOR172W.S1 Zn2-Cys6 zinc-finger transcription factor that activates genes involved in multidrug resistance; paralog of Yrr1p, acting on an overlapping set of target genes 1.94722929986769 1001.55725097656 900.922485351563 YRM1 6855 // multidrug transport // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3704 // specific RNA polymerase II transcription factor activity // inferred from direct assay 858.805908203125 958.548828125 1044.56567382813 943.0390625 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR172W /GEN=YRM1 /DB_XREF=GI:6324746 /SEG=NC_001147:+654210,656570 /DEF=Zn2-Cys6 zinc-finger transcription factor that activates genes involved in multidrug resistance; paralog of Yrr1p, acting on an overlapping set of target genes /NOTE=Yrm1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IDA] [pmid 14512416]; go_process: multidrug transport [goid GO:0006855] [evidence IMP] [pmid 14512416]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IDA] [pmid 14512416] --- --- --- --- --- --- S0005698 // YRM1 SGDID:S0005698, Chr XV from 654210-656570, Verified ORF // sgd // 11 // --- /// GENSCAN00000017592 // cdna:Genscan chromosome:SGD1:XV:654210:656570:1 // ensembl // 11 // --- /// YOR172W // cdna:known chromosome:SGD1:XV:654210:656570:1 gene:YOR172W // ensembl // 11 // --- --- No cerevisiae_gene -1.94722929986769 1.1161413993187 1.71293788585566 1.21630005551972 1.09808171263413 Max fold change below threshold 4 1.94722929986769 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779275_at YHR104W.S1 Aldose reductase involved in methylglyoxal, d-xylose and arabinose metabolism; stress induced (osmotic, ionic, oxidative, heat shock, starvation and heavy metals); regulated by the HOG pathway 1.94663345927082 5791.6240234375 3835.34765625 GRE3 6950 // response to stress // inferred from direct assay /// 19568 // arabinose catabolism // inferred from direct assay /// 19568 // arabinose catabolism // inferred from mutant phenotype /// 42843 // D-xylose catabolism // inferred from direct assay /// 42843 // D-xylose catabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4032 // aldehyde reductase activity // inferred from direct assay /// 4033 // aldo-keto reductase activity // inferred from sequence similarity 3983.59741210938 6453.64404296875 5129.60400390625 3687.09790039063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR104W /GEN=GRE3 /DB_XREF=GI:6321896 /SEG=NC_001140:+323411,324394 /DEF=Aldose reductase involved in methylglyoxal, d-xylose and arabinose metabolism; stress induced (osmotic, ionic, oxidative, heat shock, starvation and heavy metals); regulated by the HOG pathway /NOTE=Gre3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: aldehyde reductase activity [goid GO:0004032] [evidence IDA] [pmid 11525399]; go_function: aldo-keto reductase activity [goid GO:0004033] [evidence ISS] [pmid 11306085]; go_process: D-xylose metabolism [goid GO:0042732] [evidence IDA,IMP] [pmid 12271459]; go_process: arabinose metabolism [goid GO:0019566] [evidence IDA,IMP] [pmid 12271459]; go_process: response to stress [goid GO:0006950] [evidence IDA] [pmid 11525399] --- --- --- --- --- --- S0001146 // GRE3 SGDID:S0001146, Chr VIII from 323411-324394, Verified ORF // sgd // 11 // --- /// GENSCAN00000016641 // cdna:Genscan chromosome:SGD1:VIII:323411:324394:1 // ensembl // 11 // --- /// GENEFINDER00000020306 // cdna:GeneFinder chromosome:SGD1:VIII:323447:324394:1 // ensembl // 11 // --- /// YHR104W // cdna:known chromosome:SGD1:VIII:323411:324394:1 gene:YHR104W // ensembl // 11 // --- --- No cerevisiae_gene -1.94663345927082 1.62005428142686 -1.10547676893871 1.28768132751398 -1.08041541606133 Max fold change below threshold 4 1.94663345927082 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778626_at SPBC354.06.S1 --- 1.94661759325372 --- --- --- --- 0.739611387252808 1.43974053859711 0.704131305217743 0.564016163349152 0.969726979732513 0.919434010982513 0.997070014476776 0.962401986122131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC354.06 /GEN=mrps16 /DEF=mitochondrial ribosomal protein subunit s16 --- --- --- --- --- --- SPBC354.06 // |mrps16||mitochondrial ribosomal protein subunit S16|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.33817692861898 1.94661759325372 -1.07557159856209 -1.05038844569493 -1.31133012724487 Max fold change below threshold 0 1.94661759325372 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775732_at YOR243C.S1 Pseudouridine synthase, catalyzes pseudouridylation at position 35 in U2 snRNA, position 13 in cytoplasmic tRNAs, and position 35 in pre-tRNA(Tyr); Asp(256) mutation abolishes activity; conserved in archaea, some bacteria, and vertebrates 1.9464454125441 125.121810913086 188.65291595459 PUS7 1522 // pseudouridine synthesis // inferred from direct assay /// 6400 // tRNA modification // inferred from direct assay /// 40031 // snRNA modification // inferred from direct assay 5634 // nucleus // inferred from direct assay 9982 // pseudouridine synthase activity // inferred from direct assay 184.007797241211 98.8824005126953 151.361221313477 193.298034667969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR243C /GEN=PUS7 /DB_XREF=GI:6324817 /SEG=NC_001147:-790211,792241 /DEF=pseudouridylates U2 snRNA at position 35 /NOTE=Pus7p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: pseudouridine synthase activity [goid GO:0009982] [evidence IDA] [pmid 12682021]; go_process: pseudouridine synthesis [goid GO:0001522] [evidence IDA] [pmid 12682021]; go_process: snRNA modification [goid GO:0040031] [evidence IDA] [pmid 14561887]; go_process: tRNA modification [goid GO:0006400] [evidence IDA] [pmid 14561887] --- --- --- --- --- --- S0005769 // PUS7 SGDID:S0005769, Chr XV from 792241-790211, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017667 // cdna:Genscan chromosome:SGD1:XV:790211:792241:-1 // ensembl // 11 // --- /// GENEFINDER00000022687 // cdna:GeneFinder chromosome:SGD1:XV:790211:792241:-1 // ensembl // 11 // --- /// YOR243C // cdna:known chromosome:SGD1:XV:790211:792241:-1 gene:YOR243C // ensembl // 11 // --- --- No cerevisiae_gene 1.9464454125441 -1.86087510302287 -1.01485070399588 -1.21568652554753 1.05048828129049 Max fold change below threshold 4 1.9464454125441 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770300_at YNL225C.S1 Component of the spindle pole body outer plaque; required for spindle orientation and mitotic nuclear migration 1.9457731716417 256.45832824707 539.435592651367 CNM67 7020 // microtubule nucleation // inferred from physical interaction /// 7052 // mitotic spindle organization and biogenesis // inferred from mutant phenotype 5816 // spindle pole body // inferred from direct assay /// 5824 // outer plaque of spindle pole body // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from physical interaction 498.634124755859 256.6513671875 256.265289306641 580.237060546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL225C /GEN=CNM67 /DB_XREF=GI:6324104 /SEG=NC_001146:-222723,224468 /DEF=chaotic nuclear migration; predicted mass is 67kDa /NOTE=Cnm67p; go_component: outer plaque of spindle pole body [goid GO:0005824] [evidence IDA] [pmid 11514632]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 9585415]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9585415]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752] --- --- --- --- --- --- S0005169 // CNM67 SGDID:S0005169, Chr XIV from 224468-222723, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019859 // cdna:Genscan chromosome:SGD1:XIV:222723:224468:-1 // ensembl // 11 // --- /// GENEFINDER00000020450 // cdna:GeneFinder chromosome:SGD1:XIV:222723:224468:-1 // ensembl // 11 // --- /// YNL225C // cdna:known chromosome:SGD1:XIV:222723:224468:-1 gene:YNL225C // ensembl // 11 // --- --- No cerevisiae_gene -1.278653595206 -1.94284616606611 1.10474763120911 -1.9457731716417 1.16365293055498 Max fold change below threshold 4 1.9457731716417 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771282_at YDR002W.S1 Yeast Ran Binder #1; suppressor of FUS1; homolog of mouse HTF9a and human RanBP1; nuclear GTPase-activating protein for Ran 1.94562656186946 3390.03100585938 1850.08685302734 YRB1 82 // G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 6405 // RNA-nucleus export // inferred from mutant phenotype /// 6511 // ubiquitin-dependent protein catabolism // inferred from mutant phenotype /// 6606 // protein-nucleus import // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8536 // Ran GTPase binding // inferred from direct assay 1858.22058105469 3428.39331054688 3351.66870117188 1841.953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR002W /GEN=YRB1 /DB_XREF=GI:6320205 /SEG=NC_001136:+453042,453647 /DEF=Yeast Ran Binder #1; suppressor of FUS1; homolog of mouse HTF9a and human RanBP1 /NOTE=Yrb1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10825193]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10825193]; go_function: RAN protein binding [goid GO:0008536] [evidence IDA] [pmid 7836422]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IMP] [pmid 10991951]; go_process: RNA-nucleus export [goid GO:0006405] [evidence IMP] [pmid 7489726]; go_process: protein-nucleus import [goid GO:0006606] [evidence IMP] [pmid 7489726]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence IMP] [pmid 10991951] --- --- --- --- --- --- S0002409 // YRB1 SGDID:S0002409, Chr IV from 453042-453647, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023463 // cdna:GeneFinder chromosome:SGD1:IV:453042:453647:1 // ensembl // 11 // --- /// GENSCAN00000025100 // cdna:Genscan chromosome:SGD1:IV:453042:453647:1 // ensembl // 11 // --- /// YDR002W // cdna:known chromosome:SGD1:IV:453042:453647:1 gene:YDR002W // ensembl // 11 // --- --- No cerevisiae_gene 1.94562656186946 1.8449872665822 -1.04731209117276 1.80369797608718 -1.00883163411375 Max fold change below threshold 4 1.94562656186946 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778858_at SPAC26H5.05.S1 --- 1.94554845862714 --- --- --- --- 6.44456386566162 11.7069225311279 10.4637994766235 5.74465942382813 0.149657994508743 0.111571997404099 0.171387001872063 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26H5.05 /DEF=involved in transcriptional regulation (predicted) --- --- --- --- --- --- SPAC26H5.05 // |||ankyrin repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.17160734423631 1.81655776483271 -1.94554845862714 1.62366293433408 -1.12183567209056 Max fold change below threshold 4 1.94554845862714 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777562_at SPCC74.04.S1 --- 1.94529633493302 --- --- --- --- 8.1801643371582 12.4843559265137 15.9128437042236 7.3715353012085 0.0676269978284836 0.24609400331974 0.030273400247097 0.144775390625 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC74.04 /DEF=amino acid permease family --- --- --- --- --- --- SPCC74.04 // |||amino acid permease family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.00628676705222 1.52617421997304 -1.0598981326754 1.94529633493302 -1.10969614916137 Max fold change below threshold 4 1.94529633493302 Max fold change below threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1772751_at YBL008W-A.S1 Identified by fungal homology and RT-PCR 1.94354624413569 35.0412731170654 20.6384325027466 --- --- --- --- 21.5622482299805 41.9072265625 28.1753196716309 19.7146167755127 0.00585938012227416 0.000732421991415322 0.00195312988944352 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL008W-A /GEN=SCT1 /DB_XREF=GI:33438764 /SEG=NC_001134:+209374,209613 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ybl008w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028529 // YBL008W-A SGDID:S0028529, Chr II from 209412-209651, Uncharacterized ORF // sgd // 10 // --- /// YBL008W-A // cdna:known chromosome:SGD1:II:209412:209651:1 gene:YBL008W-A // ensembl // 10 // --- --- No cerevisiae_gene -1.83086931499748 1.94354624413569 -1.6519255819948 1.30669674938885 -1.09371886227901 Max fold change below threshold 4 1.94354624413569 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1775969_at YML013W.S1 UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p, has a ubiquitin-associated (UBA) domain, interacts with ubiquitylated proteins in vivo, and is required for degradation of a ubiquitylated model substrate 1.94336906993562 485.972579956055 625.483276367188 SEL1 9306 // protein secretion // inferred from mutant phenotype /// 43161 // proteasomal ubiquitin-dependent protein catabolism // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay --- 582.852905273438 299.918792724609 672.0263671875 668.113647460938 0.000732421991415322 0.00292969006113708 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML013W /GEN=SEL1 /DB_XREF=GI:6323628 /SEG=NC_001145:+244149,245903 /DEF=Endoplasmic reticulum protein whose absence causes highly increased efficiency of secretion; has a K. lactis ortholog /NOTE=Sel1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein secretion [goid GO:0009306] [evidence IMP] [pmid 12489121] --- --- --- --- --- --- S0004475 // SEL1 SGDID:S0004475, Chr XIII from 244149-245903, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022056 // cdna:GeneFinder chromosome:SGD1:XIII:243225:245903:1 // ensembl // 11 // --- /// GENSCAN00000018706 // cdna:Genscan chromosome:SGD1:XIII:244149:245903:1 // ensembl // 11 // --- /// YML013W // cdna:known chromosome:SGD1:XIII:244149:245903:1 gene:YML013W // ensembl // 11 // --- YML012C-A // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene -1.17278950496898 -1.94336906993562 1.42574565980785 1.15299479698437 1.1462817486472 Max fold change below threshold 4 1.94336906993562 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772703_at YML098W.S1 TFIID subunit (19 kDa), involved in RNA polymerase II transcription initiation, similar to histone H4 with atypical histone fold motif of Spt3-like transcription factors 1.94334647198203 220.427955627441 178.732574462891 TAF13 114 // G1-specific transcription in mitotic cell cycle // inferred from physical interaction /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement 5634 // nucleus // inferred from direct assay /// 5669 // transcription factor TFIID complex // traceable author statement /// 5669 // transcription factor TFIID complex // inferred from direct assay 16251 // general RNA polymerase II transcription factor activity // traceable author statement 162.668762207031 160.93049621582 279.925415039063 194.79638671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML098W /GEN=TAF13 /DB_XREF=GI:6323540 /SEG=NC_001145:+77267,77770 /DEF=TFIID subunit (19 kDa), involved in RNA polymerase II transcription initiation, similar to histone H4 with atypical histone fold motif of Spt3-like transcription factors /NOTE=Taf13p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_component: transcription factor TFIID complex [goid GO:0005669] [evidence TAS] [pmid 9118213]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9118213]; go_process: G1-specific transcription in mitotic cell cycle [goid GO:0000114] [evidence IPI] [pmid 9118213]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 9118213] --- --- --- --- --- --- S0004564 // TAF13 SGDID:S0004564, Chr XIII from 77267-77770, Verified ORF // sgd // 11 // --- /// GENSCAN00000018636 // cdna:Genscan chromosome:SGD1:XIII:77267:77770:1 // ensembl // 11 // --- /// GENEFINDER00000021816 // cdna:GeneFinder chromosome:SGD1:XIII:77267:77770:1 // ensembl // 11 // --- /// YML098W // cdna:known chromosome:SGD1:XIII:77267:77770:1 gene:YML098W // ensembl // 11 // --- --- No cerevisiae_gene 1.32422307812087 -1.01080134612199 1.94334647198203 1.72083079284022 1.19750334407063 Max fold change below threshold 4 1.94334647198203 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772131_s_at YNL033W.S1 Hypothetical protein /// Hypothetical protein 1.94312051798035 24.0170097351074 28.199782371521 --- --- --- --- 27.0406017303467 20.5483512878418 27.485668182373 29.3589630126953 0.00122069998178631 0.014160200022161 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL033W /GEN=NCE103 /DB_XREF=GI:6324295 /SEG=NC_001146:+572997,573851 /DEF=Hypothetical ORF /NOTE=Ynl033wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004964 // span:12-34,85-104 // numtm:2 /// S0004978 // span:12-34,85-104 // numtm:2 S0004964 // YNL019C SGDID:S0004964, Chr XIV from 599229-598375, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0004978 // YNL033W SGDID:S0004978, Chr XIV from 572998-573852, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020011 // cdna:Genscan chromosome:SGD1:XIV:572998:573852:1 // ensembl // 11 // --- /// GENEFINDER00000020662 // cdna:GeneFinder chromosome:SGD1:XIV:572998:573852:1 // ensembl // 11 // --- /// GENSCAN00000020022 // cdna:Genscan chromosome:SGD1:XIV:598375:599229:-1 // ensembl // 11 // --- /// GENEFINDER00000020676 // cdna:GeneFinder chromosome:SGD1:XIV:598375:599229:-1 // ensembl // 11 // --- /// YNL033W // cdna:known chromosome:SGD1:XIV:572998:573852:1 gene:YNL033W // ensembl // 11 // --- /// YNL019C // cdna:known chromosome:SGD1:XIV:598375:599229:-1 gene:YNL019C // ensembl // 11 // --- --- No cerevisiae_gene 1.26047334345626 -1.31594994418585 1.94312051798035 1.01645919186506 1.08573630518535 Max fold change below threshold 4 1.94312051798035 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1773242_at SPAC20G8.04c.S1 --- 1.94304590459457 --- --- --- --- 6.68905448913574 12.9971399307251 5.63382339477539 5.10536241531372 0.219482004642487 0.0375977009534836 0.0461426004767418 0.0676269978284836 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20G8.04c /DEF=electron transfer flavoprotein-ubiquinone oxidoreductase (predicted) --- --- --- --- --- --- SPAC20G8.04c // |||electron transfer flavoprotein-ubiquinone oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.25331630449009 1.94304590459457 1.1031149637966 -1.18730283511175 -1.3102016948046 Max fold change below threshold 4 1.94304590459457 Max fold change below threshold AMPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1778752_at YMR042W.S1 Transcription factor involved in regulation of arginine-responsive genes; acts with Arg81p and Arg82p 1.94291423104002 256.837303161621 219.830993652344 ARG80 6525 // arginine metabolism // traceable author statement /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from direct assay 3677 // DNA binding // traceable author statement /// 3704 // specific RNA polymerase II transcription factor activity // inferred from direct assay 211.307525634766 189.237075805664 324.437530517578 228.354461669922 0.000732421991415322 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR042W /GEN=ARG80 /DB_XREF=GI:6323685 /SEG=NC_001145:+352602,353135 /DEF=Regulator of arginine-responsive genes with ARG81 and ARG82 /NOTE=Arg80p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 3311884]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 12138185]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IDA] [pmid 12138185]; go_process: arginine metabolism [goid GO:0006525] [evidence TAS] [pmid 3298999]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IDA] [pmid 12138185] --- --- --- --- --- S0004645 // span:112-134 // numtm:1 S0004645 // ARG80 SGDID:S0004645, Chr XIII from 352602-353135, Verified ORF // sgd // 11 // --- /// GENSCAN00000018750 // cdna:Genscan chromosome:SGD1:XIII:352602:353135:1 // ensembl // 11 // --- /// GENEFINDER00000021911 // cdna:GeneFinder chromosome:SGD1:XIII:352602:353135:1 // ensembl // 11 // --- /// YMR042W // cdna:known chromosome:SGD1:XIII:352602:353135:1 gene:YMR042W // ensembl // 11 // --- --- No cerevisiae_gene 1.94291423104002 -1.11662857151612 1.04075814633618 1.53538086039752 1.08067358691531 Max fold change below threshold 4 1.94291423104002 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770089_at YFR038W.S1 Hypothetical protein 1.94256486620295 148.574005126953 307.911392211914 --- --- --- 4386 // helicase activity // inferred from sequence similarity 286.957611083984 147.720993041992 149.427017211914 328.865173339844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR038W /GEN=RSC8 /DB_XREF=GI:42742173 /SEG=NC_001138:+229367,231928 /DEF=Hypothetical ORF /NOTE=Yfr038wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: helicase activity [goid GO:0004386] [evidence ISS] [pmid 10077188]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001934 // YFR038W SGDID:S0001934, Chr VI from 229367-231928, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018531 // cdna:GeneFinder chromosome:SGD1:VI:229367:231928:1 // ensembl // 11 // --- /// GENSCAN00000023276 // cdna:Genscan chromosome:SGD1:VI:229394:231928:1 // ensembl // 11 // --- /// YFR038W // cdna:known chromosome:SGD1:VI:229367:231928:1 gene:YFR038W // ensembl // 11 // --- --- No cerevisiae_gene -1.45693260400661 -1.94256486620295 -1.17039876714533 -1.92038639623668 1.14604095043011 Max fold change below threshold 4 1.94256486620295 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780103_at YGL233W.S1 Essential 113kDa subunit of the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, and Exo84p), which mediates polarized targeting of vesicles to active sites of exocytosis; Sec15p associates with Sec4p and vesicles 1.94256090428979 526.023300170898 716.138793945313 SEC15 910 // cytokinesis // inferred from mutant phenotype /// 6893 // Golgi to plasma membrane transport // traceable author statement /// 6904 // vesicle docking during exocytosis // traceable author statement /// 6906 // vesicle fusion // traceable author statement /// 7121 // bipolar bud site selection // inferred from mutant phenotype 145 // exocyst // traceable author statement /// 145 // exocyst // inferred from physical interaction /// 5934 // bud tip // inferred from physical interaction 5515 // protein binding // inferred from direct assay 638.920837402344 460.705596923828 591.341003417969 793.356750488281 0.000732421991415322 0.014160200022161 0.00585938012227416 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL233W /GEN=SEC15 /DB_XREF=GI:6321204 /SEG=NC_001139:+59121,61853 /DEF=Protein involved in vesicle traffic between Golgi and plasma membrane. The Exocyst complex is required for exocytosis. /NOTE=Sec15p; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IDA] [pmid 10652251]; go_component: exocyst [goid GO:0000145] [evidence TAS] [pmid 9700152]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 10022848]; go_process: Golgi to plasma membrane transport [goid GO:0006893] [evidence TAS] [pmid 9700152]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence TAS] [pmid 9700152]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251]; go_process: vesicle docking during exocytosis [goid GO:0006904] [evidence TAS] [pmid 9700152]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 9700152] --- --- --- --- --- --- S0003202 // SEC15 SGDID:S0003202, Chr VII from 59122-61854, Verified ORF // sgd // 11 // --- /// GENSCAN00000019175 // cdna:Genscan chromosome:SGD1:VII:59122:61854:1 // ensembl // 11 // --- /// YGL233W // cdna:known chromosome:SGD1:VII:59122:61854:1 gene:YGL233W // ensembl // 11 // --- --- No cerevisiae_gene -1.94256090428979 -1.38683107318095 1.31102612045629 -1.08046090785074 1.24171368978014 Max fold change below threshold 4 1.94256090428979 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1770144_at YLR343W.S1 Putative 1,3-beta-glucanosyltransferase, has similarity to Gas1p 1.94178039875303 45.7455139160156 91.793155670166 GAS2 --- 5737 // cytoplasm // inferred from direct assay 42124 // 1,3-beta-glucanosyltransferase activity // inferred from sequence similarity 87.8823776245117 45.258659362793 46.2323684692383 95.7039337158203 0.000244141003349796 0.0952147990465164 0.171387001872063 0.000732421991415322 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR343W /GEN=FKS1 /DB_XREF=GI:6323375 /SEG=NC_001144:+816094,817761 /DEF=Hypothetical ORF /NOTE=Ylr343wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004335 // span:7-24 // numtm:1 S0004335 // GAS2 SGDID:S0004335, Chr XII from 816094-817761, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018081 // cdna:Genscan chromosome:SGD1:XII:816094:817761:1 // ensembl // 11 // --- /// GENEFINDER00000024886 // cdna:GeneFinder chromosome:SGD1:XII:816094:817761:1 // ensembl // 11 // --- /// YLR343W // cdna:known chromosome:SGD1:XII:816094:817761:1 gene:YLR343W // ensembl // 11 // --- --- No cerevisiae_gene -1.34887025613024 -1.94178039875303 -1.87931695101481 -1.90088417561792 1.08900027858517 Max fold change below threshold 4 1.94178039875303 Max fold change below threshold PPAPAP No 2 0 PAAP 2 2 0 No No 1 < x = 2
1775322_at YMR038C.S1 Copper chaperone for superoxide dismutase Sod1p, involved in oxidative stress protection; Met-X-Cys-X2-Cys motif within the N-terminal portion is involved in insertion of copper into Sod1p under conditions of copper deprivation 1.94161773634607 858.666870117188 509.704254150391 CCS1 15680 // intracellular copper ion transport // inferred from sequence similarity /// 15680 // intracellular copper ion transport // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 16532 // superoxide dismutase copper chaperone activity // inferred from genetic interaction /// 16532 // superoxide dismutase copper chaperone activity // inferred from sequence similarity /// 16532 // superoxide dismutase copper chaperone activity // inferred from mutant phenotype 506.554382324219 733.798767089844 983.534973144531 512.854125976563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR038C /GEN=LYS7 /DB_XREF=GI:6323681 /SEG=NC_001145:-347510,348259 /DEF=Involved in lysine biosynthesis, oxidative stress protection; copper chaperone for SOD1 /NOTE=Lys7p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 9295278]; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 11500508]; go_function: superoxide dismutase copper chaperone activity [goid GO:0016532] [evidence IGI,IMP,ISS] [pmid 9295278]; go_process: intracellular copper ion transport [goid GO:0015680] [evidence IMP,ISS] [pmid 9295278] --- --- --- --- --- --- S0004641 // LYS7 SGDID:S0004641, Chr XIII from 348259-347510, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018747 // cdna:Genscan chromosome:SGD1:XIII:347510:348259:-1 // ensembl // 11 // --- /// GENEFINDER00000021789 // cdna:GeneFinder chromosome:SGD1:XIII:347510:348259:-1 // ensembl // 11 // --- /// YMR038C // cdna:known chromosome:SGD1:XIII:347510:348259:-1 gene:YMR038C // ensembl // 11 // --- --- No cerevisiae_gene 1.79646617274264 1.44860807189736 1.10640593094406 1.94161773634607 1.01243646066872 Max fold change below threshold 4 1.94161773634607 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775298_at YDL018C.S1 Protein with similarity to Emp24p and Erv25p, member of the p24 family involved in ER to Golgi transport 1.94114415996609 150.864654541016 241.138381958008 ERP3 45045 // secretory pathway // inferred from mutant phenotype 16021 // integral to membrane // inferred from sequence similarity --- 225.514709472656 138.539779663086 163.189529418945 256.762054443359 0.00195312988944352 0.00805663969367743 0.00585938012227416 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL018C /GEN=ERP3 /DB_XREF=GI:6320186 /SEG=NC_001136:-422830,423507 /DEF=Protein with similarity to Emp24p and Erv25p, member of the p24 family involved in ER to Golgi transport /NOTE=Erp3p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 10359606]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: secretory pathway [goid GO:0045045] [evidence IMP] [pmid 10359606] --- --- --- --- --- S0002176 // span:195-217 // numtm:1 S0002176 // ERP3 SGDID:S0002176, Chr IV from 423507-422830, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023598 // cdna:GeneFinder chromosome:SGD1:IV:422830:423507:-1 // ensembl // 11 // --- /// GENSCAN00000025087 // cdna:Genscan chromosome:SGD1:IV:422830:423507:-1 // ensembl // 11 // --- /// YDL018C // cdna:known chromosome:SGD1:IV:422830:423507:-1 gene:YDL018C // ensembl // 11 // --- --- No cerevisiae_gene -1.4517163638421 -1.62779751794816 1.94114415996609 -1.38191898877107 1.13856011895531 Max fold change below threshold 4 1.94114415996609 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1772101_at YML060W.S1 Mitochondrial glycosylase/lyase that specifically excises 7,8-dihydro-8-oxoguanine residues located opposite cytosine or thymine residues in DNA, repairs oxidative damage to mitochondrial DNA 1.94105158192654 66.7035484313965 108.041351318359 OGG1 6281 // DNA repair // inferred from mutant phenotype /// 6285 // base-excision repair, AP site formation // inferred from direct assay 5739 // mitochondrion // inferred from direct assay 8534 // purine-specific oxidized base lesion DNA N-glycosylase activity // inferred from direct assay 99.7101516723633 51.369140625 82.037956237793 116.372550964355 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML060W /GEN=OGG1 /DB_XREF=GI:6323580 /SEG=NC_001145:+151871,153001 /DEF=Mitochondrial glycosylase/lyase that specifically excises 7,8-dihydro-8-oxoguanine residues located opposite cytosine or thymine residues in DNA, repairs oxidative damage to mitochondrial DNA /NOTE=Ogg1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11239005]; go_function: purine-specific oxidized base lesion DNA N-glycosylase activity [goid GO:0008534] [evidence IDA] [pmid 8643552]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 11239005]; go_process: base-excision repair, AP site formation [goid GO:0006285] [evidence IDA] [pmid 8643552] --- --- --- --- --- --- S0004525 // OGG1 SGDID:S0004525, Chr XIII from 151871-153001, Verified ORF // sgd // 11 // --- /// GENSCAN00000018667 // cdna:Genscan chromosome:SGD1:XIII:151871:153001:1 // ensembl // 11 // --- /// GENEFINDER00000021807 // cdna:GeneFinder chromosome:SGD1:XIII:152297:153001:1 // ensembl // 11 // --- /// YML060W // cdna:known chromosome:SGD1:XIII:151871:153001:1 gene:YML060W // ensembl // 11 // --- --- No cerevisiae_gene 1.56242370904008 -1.94105158192654 1.00340449066198 -1.21541486703235 1.16710835368843 Max fold change below threshold 4 1.94105158192654 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775340_at YDL169C.S1 Protein of unknown function 1.94051507546859 3074.7548828125 2518.33032226563 UGX2 --- --- --- 2433.88842773438 3052.25952148438 3097.25024414063 2602.77221679688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL169C /GEN=UGX2 /DB_XREF=GI:6320032 /SEG=NC_001136:-158065,158736 /DEF=Product of gene unknown /NOTE=Ugx2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002328 // UGX2 SGDID:S0002328, Chr IV from 158736-158065, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024975 // cdna:Genscan chromosome:SGD1:IV:158065:158736:-1 // ensembl // 11 // --- /// YDL169C // cdna:known chromosome:SGD1:IV:158065:158736:-1 gene:YDL169C // ensembl // 11 // --- --- No cerevisiae_gene -1.94051507546859 1.25406714897183 1.15617450816299 1.27255227020564 1.06938846790923 Max fold change below threshold 4 1.94051507546859 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778824_at YJL049W.S1 Hypothetical protein 1.93994991767694 154.90308380127 293.067352294922 --- --- --- --- 295.372619628906 157.548309326172 152.257858276367 290.762084960938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL049W /GEN=MTR4 /DB_XREF=GI:6322412 /SEG=NC_001142:+345889,347241 /DEF=Hypothetical ORF /NOTE=Yjl049wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003585 // YJL049W SGDID:S0003585, Chr X from 345889-347241, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024104 // cdna:Genscan chromosome:SGD1:X:345889:347241:1 // ensembl // 11 // --- /// YJL049W // cdna:known chromosome:SGD1:X:345889:347241:1 gene:YJL049W // ensembl // 11 // --- --- No cerevisiae_gene -1.16945658185055 -1.87480666020603 1.05441569538278 -1.93994991767694 -1.01585672584714 Max fold change below threshold 4 1.93994991767694 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774192_at YOL045W.S1 One of two (see also PSK1) PAS domain containing S/T protein kinases; regulates sugar flux and translation in response to an unknown metabolite by phosphorylating Ugp1p and Gsy2p (sugar flux) and Caf20p, Tif11p and Sro9p (translation) 1.93929709374212 587.944366455078 980.452728271484 PSK2 6468 // protein amino acid phosphorylation // inferred from direct assay /// 6468 // protein amino acid phosphorylation // inferred from mutant phenotype /// 19318 // hexose metabolism // inferred from genetic interaction /// 19318 // hexose metabolism // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4674 // protein serine/threonine kinase activity // inferred from direct assay /// 4674 // protein serine/threonine kinase activity // inferred from mutant phenotype 943.616821289063 594.614562988281 581.274169921875 1017.28863525391 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL045W /GEN=PSK2 /DB_XREF=GI:6324527 /SEG=NC_001147:+243495,246800 /DEF=PAS domain-containing Serine/threonine Kinase /NOTE=Psk2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence IDA,IMP] [pmid 12372297]; go_process: hexose metabolism [goid GO:0019318] [evidence IGI,IMP] [pmid 12372297]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA,IMP] [pmid 12372297] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-53 /// hanks // 2.2.11 // CaMK Group; CaMK II KIN1/SNF1/Nim1; YKL453 // 3.0E-63 --- --- S0005405 // PSK2 SGDID:S0005405, Chr XV from 243495-246800, Verified ORF // sgd // 10 // --- /// GENSCAN00000017432 // cdna:Genscan chromosome:SGD1:XV:243495:246800:1 // ensembl // 10 // --- /// GENEFINDER00000022820 // cdna:GeneFinder chromosome:SGD1:XV:245316:246800:1 // ensembl // 10 // --- /// YOL045W // cdna:known chromosome:SGD1:XV:243495:246800:1 gene:YOL045W // ensembl // 10 // --- --- No cerevisiae_gene -1.93929709374212 -1.58693863222395 -1.05827653676562 -1.62335928571519 1.07807386674625 Max fold change below threshold 4 1.93929709374212 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774364_at SPBC887.14c.S1 --- 1.93926614118995 --- --- --- --- 1.08009815216064 1.07574951648712 0.731380343437195 0.663862407207489 0.932372987270355 0.969726979732513 0.985840022563934 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC887.14c /GEN=pfh1 /DEF=DNA helicase (5-3) (PMID 12058079) --- --- --- --- --- --- SPBC887.14c // |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.93926614118995 -1.00404242400938 -1.58988177292878 -1.47679406734479 -1.62699098553273 Max fold change below threshold 0 1.93926614118995 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776265_at YJL204C.S1 F-box protein involved in recycling plasma membrane proteins internalized by endocytosis; localized to sites of polarized growth 1.93785156435811 278.600868225098 518.82421875 RCY1 6897 // endocytosis // inferred from mutant phenotype 5768 // endosome // inferred from direct assay /// 5794 // Golgi apparatus // inferred from direct assay /// 30427 // site of polarized growth // inferred from direct assay 5515 // protein binding // inferred from mutant phenotype /// 5515 // protein binding // inferred from physical interaction 492.949951171875 254.379623413086 302.822113037109 544.698486328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL204C /GEN=RCY1 /DB_XREF=GI:6322257 /SEG=NC_001142:-50629,53151 /DEF=ReCYcling 1 /NOTE=Rcy1p; go_component: site of polarized growth (sensu Saccharomyces) [goid GO:0000134] [evidence IDA] [pmid 11287615]; go_function: protein binding [goid GO:0005515] [evidence IMP,IPI] [pmid 11287615]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 11378903] --- --- --- --- --- --- S0003740 // RCY1 SGDID:S0003740, Chr X from 53151-50629, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000023985 // cdna:Genscan chromosome:SGD1:X:50629:53151:-1 // ensembl // 11 // --- /// YJL204C // cdna:known chromosome:SGD1:X:50629:53151:-1 gene:YJL204C // ensembl // 11 // --- --- No cerevisiae_gene -1.45233063648343 -1.93785156435811 1.17594445707369 -1.62785321794339 1.10497725992919 Max fold change below threshold 4 1.93785156435811 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774139_at YOL044W.S1 Phosphorylated tail-anchored type II integral peroxisomal membrane protein required for peroxisome biogenesis, cells lacking Pex15p mislocalize peroxisomal matrix proteins to cytosol, overexpression results in impaired peroxisome assembly 1.93710879900185 1073.21954345703 865.190826416016 PEX15 6625 // protein-peroxisome targeting // inferred from mutant phenotype /// 7031 // peroxisome organization and biogenesis // inferred from mutant phenotype 5778 // peroxisomal membrane // inferred from direct assay --- 810.111633300781 1038.00341796875 1108.43566894531 920.27001953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL044W /GEN=PEX15 /DB_XREF=GI:6324529 /SEG=NC_001147:+247148,248299 /DEF=44 kDa phosphorylated integral peroxisomal membrane protein /NOTE=Pex15p; go_component: peroxisomal membrane [goid GO:0005778] [evidence IDA] [pmid 9405362]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence IMP] [pmid 9405362]; go_process: protein-peroxisome targeting [goid GO:0006625] [evidence IMP] [pmid 9405362] --- --- --- --- --- --- S0005404 // PEX15 SGDID:S0005404, Chr XV from 247148-248299, Verified ORF // sgd // 11 // --- /// YOL044W // cdna:known chromosome:SGD1:XV:247148:248299:1 gene:YOL044W // ensembl // 11 // --- --- No cerevisiae_gene -1.93710879900185 1.28130911259653 1.26970634608087 1.36825052669472 1.13597926718029 Max fold change below threshold 4 1.93710879900185 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776393_at YOR249C.S1 Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition 1.93707643342955 85.9206848144531 174.142463684082 APC5 22 // mitotic spindle elongation // traceable author statement /// 70 // mitotic sister chromatid segregation // traceable author statement /// 6333 // chromatin assembly or disassembly // inferred from mutant phenotype /// 7091 // mitotic metaphase/anaphase transition // traceable author statement /// 8054 // cyclin catabolism // traceable author statement /// 16567 // protein ubiquitination // inferred from physical interaction /// 31145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from physical interaction 5680 // anaphase-promoting complex // traceable author statement 4842 // ubiquitin-protein ligase activity // traceable author statement /// 5515 // protein binding // traceable author statement 162.919815063477 87.7353363037109 84.1060333251953 185.365112304688 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR249C /GEN=APC5 /DB_XREF=GI:6324823 /SEG=NC_001147:-798674,800731 /DEF=subunit of the Anaphase Promoting Complex; all known APC subunits co-immunoprecipitate with epitope-tagged Apc5 /NOTE=Apc5p; go_component: anaphase-promoting complex [goid GO:0005680] [evidence TAS] [pmid 10465783]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 10465783]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 10465783]; go_process: chromatin assembly/disassembly [goid GO:0006333] [evidence IMP] [pmid 12399376]; go_process: cyclin catabolism [goid GO:0008054] [evidence TAS] [pmid 10465783]; go_process: mitotic metaphase/anaphase transition [goid GO:0007091] [evidence TAS] [pmid 10465783]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence TAS] [pmid 10465783]; go_process: mitotic spindle elongation [goid GO:0000022] [evidence TAS] [pmid 10465783]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10465783] --- --- --- --- --- --- S0005775 // APC5 SGDID:S0005775, Chr XV from 800731-798674, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017673 // cdna:Genscan chromosome:SGD1:XV:798674:800437:-1 // ensembl // 11 // --- /// YOR249C // cdna:known chromosome:SGD1:XV:798674:800731:-1 gene:YOR249C // ensembl // 11 // --- --- No cerevisiae_gene -1.52282357055489 -1.85694637904506 1.37377388438242 -1.93707643342955 1.1377689830575 Max fold change below threshold 4 1.93707643342955 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779675_at YIL020C.S1 Phosphoribosyl-5-amino-1-phosphoribosyl-4-imidazolecarboxiamide isomerase, catalyzes the fourth step in histidine biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts 1.93640999910306 103.898258209229 222.055511474609 HIS6 105 // histidine biosynthesis // traceable author statement 5622 // intracellular // traceable author statement 3949 // 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity // traceable author statement 198.807739257813 105.128311157227 102.66820526123 245.303283691406 0.000244141003349796 0.00585938012227416 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL020C /GEN=HIS6 /DB_XREF=GI:6322169 /SEG=NC_001141:-314033,314818 /DEF=Phosphoribosyl-5-amino-1-phosphoribosyl-4- imidazolecarboxiamide isomerase, catalyzes the fourth step in histidine biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts /NOTE=His6p; go_component: cell [goid GO:0005623] [evidence TAS] [pmid 8852895]; go_function: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase activity [goid GO:0003949] [evidence TAS] [pmid 8852895]; go_process: histidine biosynthesis [goid GO:0000105] [evidence TAS] [pmid 8852895] --- --- --- --- --- --- S0001282 // HIS6 SGDID:S0001282, Chr IX from 314818-314033, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016460 // cdna:Genscan chromosome:SGD1:IX:314033:314818:-1 // ensembl // 11 // --- /// GENEFINDER00000019077 // cdna:GeneFinder chromosome:SGD1:IX:314033:314818:-1 // ensembl // 11 // --- /// YIL020C // cdna:known chromosome:SGD1:IX:314033:314818:-1 gene:YIL020C // ensembl // 11 // --- --- No cerevisiae_gene 1.28061478552872 -1.8910961002739 1.35062319135127 -1.93640999910306 1.23387190361487 Max fold change below threshold 4 1.93640999910306 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1773343_at YPR066W.S1 Protein that acts together with Ula1p to activate Rub1p before its conjugation to proteins (neddylation), which may play a role in protein degradation; GFP-fusion protein localizes to the cytoplasm in a punctate pattern 1.93632115974198 117.598094940186 109.919616699219 UBA3 45116 // protein neddylation // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 19781 // NEDD8 activating enzyme activity // inferred from direct assay 110.266647338867 116.551216125488 118.644973754883 109.57258605957 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR066W /GEN=UBA3 /DB_XREF=GI:6325323 /SEG=NC_001148:+681208,682107 /DEF=Protein that acts together with Ula1p to activate Rub1p before its conjugation to proteins (neddlyation), which may play a role in protein degradation; GFP-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Uba3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: NEDD8 activating enzyme activity [goid GO:0019781] [evidence IDA] [pmid 9545234]; go_process: protein neddylation [goid GO:0045116] [evidence IDA] [pmid 9545234] --- --- --- --- --- --- S0006270 // UBA3 SGDID:S0006270, Chr XVI from 681210-682109, Verified ORF // sgd // 11 // --- /// GENSCAN00000017235 // cdna:Genscan chromosome:SGD1:XVI:681210:682109:1 // ensembl // 11 // --- /// GENEFINDER00000020844 // cdna:GeneFinder chromosome:SGD1:XVI:681210:682774:1 // ensembl // 9 // --- /// YPR066W // cdna:known chromosome:SGD1:XVI:681210:682109:1 gene:YPR066W // ensembl // 11 // --- --- No cerevisiae_gene 1.93632115974198 1.05699428556404 1.62352377071128 1.07598241733303 -1.00633426027674 Max fold change below threshold 4 1.93632115974198 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775577_at SPAC13G6.08.S1 --- 1.93579906843923 --- --- --- --- 7.54750967025757 14.6104621887207 5.75843095779419 9.72504901885986 0.149657994508743 0.111571997404099 0.0805663987994194 0.111571997404099 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13G6.08 /DEF=WD repeat protein --- --- --- --- --- --- SPAC13G6.08 // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.40416564660394 1.93579906843923 -1.06495779838266 -1.31068857568602 1.28851097166305 Max fold change below threshold 4 1.93579906843923 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772545_at YDR079C-A.S1 Component of the RNA polymerase II general transcription and DNA repair factor TFIIH; involved in transcription initiation; homolog of the Chlamydomonas reinhardtii REX1-S protein which is involved in DNA repair 1.93579344873363 210.111061096191 130.441703796387 TFB5 6281 // DNA repair // inferred from sequence similarity /// 6367 // transcription initiation from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5675 // transcription factor TFIIH complex // inferred from direct assay 16251 // general RNA polymerase II transcription factor activity // inferred from direct assay 120.424240112305 233.116455078125 187.105667114258 140.459167480469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR079C-A /GEN=PET100 /DB_XREF=GI:13129164 /SEG=NC_001136:-603588,603806 /DEF=Homolog of the Chlamydomonas reinhardtii REX1-S protein which is involved in DNA repair, also has homologs in other organisms including Arabidopsis, Drosophila, mouse, and human /NOTE=Ydr079c-ap --- --- --- --- --- --- S0007603 // TFB5 SGDID:S0007603, Chr IV from 603807-603589, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDR079C-A // cdna:known chromosome:SGD1:IV:603589:603807:-1 gene:YDR079C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.04962682411311 1.93579344873363 1.41098041680293 1.5537209696301 1.16636955607509 Max fold change below threshold 4 1.93579344873363 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776610_at YML106W.S1 One of two orotate phosphoribosyltransferase isozymes (see also URA10) that catalyze the fifth enzymatic step in de novo biosynthesis of pyrimidines, converting orotate into orotidine-5'-phosphate 1.93514847108895 1941.45361328125 1990.51629638672 URA5 6207 // 'de novo' pyrimidine base biosynthesis // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4588 // orotate phosphoribosyltransferase activity // traceable author statement 2121.033203125 1725.23608398438 2157.67114257813 1859.99938964844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML106W /GEN=URA5 /DB_XREF=GI:6323530 /SEG=NC_001145:+56773,57453 /DEF=Fifth step in pyrimidine biosynthesis pathway /NOTE=Ura5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: orotate phosphoribosyltransferase activity [goid GO:0004588] [evidence TAS] [pmid 2679804]; go_process: pyrimidine base biosynthesis [goid GO:0019856] [evidence TAS] [pmid 2679804] --- --- --- --- --- --- S0004574 // URA5 SGDID:S0004574, Chr XIII from 56773-57453, Verified ORF // sgd // 11 // --- /// GENSCAN00000018628 // cdna:Genscan chromosome:SGD1:XIII:56773:57453:1 // ensembl // 11 // --- /// GENEFINDER00000021880 // cdna:GeneFinder chromosome:SGD1:XIII:56773:57453:1 // ensembl // 11 // --- /// YML106W // cdna:known chromosome:SGD1:XIII:56773:57453:1 gene:YML106W // ensembl // 11 // --- --- No cerevisiae_gene 1.93514847108895 -1.22941620733236 -1.16108549892051 1.01727362843691 -1.14034080598591 Max fold change below threshold 4 1.93514847108895 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777390_at SPBC3E7.11c.S1 --- 1.93482478802246 --- --- --- --- 0.473903626203537 0.318020761013031 0.71922105550766 0.280337929725647 0.9521484375 0.985840022563934 0.850341975688934 0.991943001747131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3E7.11c /DEF=DNAJ domain protein --- --- --- --- --- --- SPBC3E7.11c // |||DNAJ domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 9 // --- --- No No 1.93482478802246 -1.49016568822096 1.01399610491218 1.51765256845442 -1.69047273291675 Max fold change below threshold 0 1.93482478802246 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775175_at YOR106W.S1 Syntaxin-related protein required for vacuolar assembly; functions with Vam7p in vacuolar protein trafficking; member of the syntaxin family of proteins 1.93481424297069 321.978942871094 559.134002685547 VAM3 6896 // Golgi to vacuole transport // traceable author statement /// 6906 // vesicle fusion // traceable author statement 5774 // vacuolar membrane // inferred from direct assay 5486 // t-SNARE activity // traceable author statement 598.4208984375 309.291137695313 334.666748046875 519.847106933594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR106W /GEN=VAM3 /DB_XREF=GI:6324680 /SEG=NC_001147:+519121,519972 /DEF=Syntaxin-related protein; required for vacuolar assembly; PEP12 homolog /NOTE=Vam3p; go_component: vacuolar membrane [goid GO:0005774] [evidence IDA] [pmid 9475723]; go_function: t-SNARE activity [goid GO:0005486] [evidence TAS] [pmid 10047442]; go_process: Golgi to vacuole transport [goid GO:0006896] [evidence TAS] [pmid 10047442]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 10047442] --- --- --- --- --- S0005632 // span:265-282 // numtm:1 S0005632 // VAM3 SGDID:S0005632, Chr XV from 519121-519972, Verified ORF // sgd // 11 // --- /// GENSCAN00000017538 // cdna:Genscan chromosome:SGD1:XV:519121:519972:1 // ensembl // 11 // --- /// YOR106W // cdna:known chromosome:SGD1:XV:519121:519972:1 gene:YOR106W // ensembl // 11 // --- --- No cerevisiae_gene -1.48908929490696 -1.93481424297069 -1.13550840276135 -1.78810981948431 -1.15114788647644 Max fold change below threshold 4 1.93481424297069 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777266_at YOR160W.S1 Nuclear import receptor, mediates the nuclear localization of proteins involved in mRNA-nucleus export 1.93459297765267 468.486999511719 814.249389648438 MTR10 6403 // RNA localization // inferred from mutant phenotype /// 6606 // protein-nucleus import // inferred from mutant phenotype /// 6606 // protein-nucleus import // inferred from physical interaction /// 6606 // protein-nucleus import // inferred from sequence similarity /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // inferred from mutant phenotype /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // inferred from physical interaction /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8139 // nuclear localization sequence binding // inferred from physical interaction /// 8139 // nuclear localization sequence binding // traceable author statement 748.927062988281 387.123840332031 549.850158691406 879.571716308594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR160W /GEN=MTR10 /DB_XREF=GI:6324734 /SEG=NC_001147:+633839,636757 /DEF=Protein involved in mRNA transport from nucleus to cytoplasm /NOTE=Mtr10p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9412460]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9545233]; go_function: nuclear localization sequence binding [goid GO:0008139] [evidence IPI,TAS] [pmid 9545233]; go_process: RNA localization [goid GO:0006403] [evidence IMP] [pmid 12167699]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence IMP,IPI,ISS] [pmid 9545233]; go_process: protein-nucleus import [goid GO:0006606] [evidence IMP,IPI,ISS] [pmid 9545233] --- --- --- --- --- --- S0005686 // MTR10 SGDID:S0005686, Chr XV from 633839-636757, Verified ORF // sgd // 11 // --- /// GENSCAN00000017584 // cdna:Genscan chromosome:SGD1:XV:633839:636757:1 // ensembl // 11 // --- /// YOR160W // cdna:known chromosome:SGD1:XV:633839:636757:1 gene:YOR160W // ensembl // 11 // --- --- No cerevisiae_gene -1.27231158225233 -1.93459297765267 1.15670415872446 -1.36205664607001 1.17444242540659 Max fold change below threshold 4 1.93459297765267 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774980_at YLL011W.S1 Essential subunit of the U3 (box C+D) snRNP complex required for 2' O-methylation of pre-RNA; has similarity to the beta subunit of trimeric G-proteins and the splicing factor Prp4p 1.93445528712127 274.773880004883 555 SOF1 154 // rRNA modification // traceable author statement /// 6365 // 35S primary transcript processing // traceable author statement /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5730 // nucleolus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // traceable author statement /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 30532 // small nuclear ribonucleoprotein complex // traceable author statement 30515 // snoRNA binding // inferred from physical interaction 529.960815429688 275.589080810547 273.958679199219 580.039184570313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL011W /GEN=SOF1 /DB_XREF=GI:6323018 /SEG=NC_001144:+127522,128991 /DEF=part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA); 56 kDa nucleolar snRNP protein that shows homology to beta subunits of G-proteins and the splicing factor Prp4 /NOTE=Sof1p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence TAS] [pmid 10690410]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence TAS] [pmid 10690410]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: snoRNA binding [goid GO:0030515] [evidence IPI] [pmid 8508778]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IPI] [pmid 12068309]; go_process: rRNA modification [goid GO:0000154] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0003934 // SOF1 SGDID:S0003934, Chr XII from 127522-128991, Verified ORF // sgd // 11 // --- /// GENSCAN00000017724 // cdna:Genscan chromosome:SGD1:XII:127522:128991:1 // ensembl // 11 // --- /// GENEFINDER00000024564 // cdna:GeneFinder chromosome:SGD1:XII:127591:128991:1 // ensembl // 11 // --- /// YLL011W // cdna:known chromosome:SGD1:XII:127522:128991:1 gene:YLL011W // ensembl // 11 // --- --- No cerevisiae_gene 1.84072976724998 -1.92301093305655 -1.00287897183999 -1.93445528712127 1.09449447521893 Max fold change below threshold 4 1.93445528712127 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777619_at SPCC24B10.10c.S1 --- 1.93443387704757 --- --- --- --- 2.93768548965454 5.68275833129883 3.67597770690918 2.3194522857666 0.567627012729645 0.274170011281967 0.398925989866257 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC24B10.10c /DEF=AAA family ATPase --- --- --- --- --- --- SPCC24B10.10c // |||AAA family ATPase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.50000219128667 1.93443387704757 1.83340223702448 1.25131765121033 -1.26654275566768 Max fold change below threshold 3 1.93443387704757 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776096_at YER134C.S1 Hypothetical protein 1.93442037370344 439.025039672852 428.833480834961 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 396.929016113281 300.604583740234 577.445495605469 460.737945556641 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER134C /GEN=GLC7 /DB_XREF=GI:6320981 /SEG=NC_001137:-437263,437799 /DEF=Hypothetical ORF /NOTE=Yer134cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000936 // YER134C SGDID:S0000936, Chr V from 437799-437263, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016914 // cdna:Genscan chromosome:SGD1:V:437263:437799:-1 // ensembl // 11 // --- /// GENEFINDER00000019732 // cdna:GeneFinder chromosome:SGD1:V:437263:437799:-1 // ensembl // 11 // --- /// YER134C // cdna:known chromosome:SGD1:V:437263:437799:-1 gene:YER134C // ensembl // 11 // --- YER133W-A // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene 1.26764758118397 -1.32043567391602 1.93442037370344 1.4547827751667 1.16075652535603 Max fold change below threshold 4 1.93442037370344 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770795_at YKL162C.S1 Hypothetical protein 1.9341430692588 327.404342651367 263.959091186523 --- --- 5739 // mitochondrion // inferred from direct assay --- 244.212707519531 256.633239746094 398.175445556641 283.705474853516 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL162C /GEN=PIR3 /DB_XREF=GI:6322687 /SEG=NC_001143:-147635,148843 /DEF=Hypothetical ORF /NOTE=Ykl162cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001645 // YKL162C SGDID:S0001645, Chr XI from 148843-147635, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018298 // cdna:Genscan chromosome:SGD1:XI:147635:148681:-1 // ensembl // 11 // --- /// YKL162C // cdna:known chromosome:SGD1:XI:147635:148843:-1 gene:YKL162C // ensembl // 11 // --- --- No cerevisiae_gene -1.617765831408 1.05085948373743 1.9341430692588 1.63044523604406 1.16171462875586 Max fold change below threshold 4 1.9341430692588 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778907_at YMR105C.S1 Phosphoglucomutase, catalyzes the conversion from glucose-1-phosphate to glucose-6-phosphate, which is a key step in hexose metabolism; functions as the acceptor for a Glc-phosphotransferase 1.93405127547237 5939.3251953125 3408.37292480469 PGM2 6008 // glucose 1-phosphate utilization // inferred from mutant phenotype /// 6008 // glucose 1-phosphate utilization // inferred from sequence similarity /// 6010 // glucose 6-phosphate utilization // inferred from sequence similarity /// 6010 // glucose 6-phosphate utilization // inferred from mutant phenotype 5829 // cytosol // traceable author statement 4614 // phosphoglucomutase activity // inferred from mutant phenotype /// 4614 // phosphoglucomutase activity // inferred from sequence similarity 3596.77368164063 6956.3447265625 4922.3056640625 3219.97216796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR105C /GEN=PGM2 /DB_XREF=GI:6323752 /SEG=NC_001145:-475896,477605 /DEF=Phosphoglucomutase /NOTE=Pgm2p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: phosphoglucomutase activity [goid GO:0004614] [evidence IMP,ISS] [pmid 8119301]; go_process: glucose 1-phosphate utilization [goid GO:0006008] [evidence IMP,ISS] [pmid 8119301]; go_process: glucose 6-phosphate utilization [goid GO:0006010] [evidence IMP,ISS] [pmid 8119301] --- --- --- --- --- --- S0004711 // PGM2 SGDID:S0004711, Chr XIII from 477605-475896, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018799 // cdna:Genscan chromosome:SGD1:XIII:475896:477605:-1 // ensembl // 11 // --- /// GENEFINDER00000021918 // cdna:GeneFinder chromosome:SGD1:XIII:475896:477605:-1 // ensembl // 11 // --- /// YMR105C // cdna:known chromosome:SGD1:XIII:475896:477605:-1 gene:YMR105C // ensembl // 11 // --- --- No cerevisiae_gene 1.20146344261299 1.93405127547237 -1.0356559459769 1.36853360810215 -1.11702011508676 Max fold change below threshold 4 1.93405127547237 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779735_at YBR278W.S1 Third-largest subunit of DNA polymerase II (DNA polymerase epsilon), required to maintain fidelity of chromosomal replication and also for inheritance of telomeric silencing; mRNA abundance peaks at the G1/S boundary of the cell cycle 1.93349732643489 223.678153991699 316.964752197266 DPB3 6272 // leading strand elongation // traceable author statement /// 6273 // lagging strand elongation // traceable author statement /// 6289 // nucleotide-excision repair // traceable author statement /// 6298 // mismatch repair // traceable author statement /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype 5657 // replication fork // traceable author statement /// 8622 // epsilon DNA polymerase complex // inferred from direct assay 3893 // epsilon DNA polymerase activity // traceable author statement 284.582183837891 199.218612670898 248.1376953125 349.347320556641 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR278W /GEN=DPB3 /DB_XREF=GI:6319754 /SEG=NC_001134:+760252,760857 /DEF=Third-largest subunit of DNA polymerase II (DNA polymerase epsilon), required to maintain fidelity of chromosomal replication and also for inheritance of telomeric silencing; mRNA abundance peaks at the G1/S boundary of the cell cycle /NOTE=Dpb3p; go_component: epsilon DNA polymerase complex [goid GO:0008622] [evidence IDA] [pmid 2406268]; go_component: replication fork [goid GO:0005657] [evidence TAS] [pmid 9745046]; go_function: epsilon DNA polymerase activity [goid GO:0003893] [evidence TAS] [pmid 9745046]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 14673157]; go_process: lagging strand elongation [goid GO:0006273] [evidence TAS] [pmid 9745046]; go_process: leading strand elongation [goid GO:0006272] [evidence TAS] [pmid 9745046]; go_process: mismatch repair [goid GO:0006298] [evidence TAS] [pmid 10072354]; go_process: nucleotide-excision repair [goid GO:0006289] [evidence TAS] [pmid 9745046] --- --- --- --- --- --- S0000482 // DPB3 SGDID:S0000482, Chr II from 760290-760895, Verified ORF // sgd // 11 // --- /// YBR278W // cdna:known chromosome:SGD1:II:760290:760895:1 gene:YBR278W // ensembl // 11 // --- GENEFINDER00000022105 // ensembl // 3 // Cross Hyb Matching Probes /// YBR277C // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene 1.02786313499919 -1.42849194672392 1.93349732643489 -1.14687203602618 1.2275797305556 Max fold change below threshold 4 1.93349732643489 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775970_at YMR013W-A.S1 Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 1.93272327161666 193.919975280762 310.830688476563 --- --- --- --- 305.080291748047 229.989990234375 157.849960327148 316.581085205078 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR013W-A /GEN=SEC59 /DB_XREF=GI:13129183 /SEG=NC_001145:+298310,298390 /DEF=Hypothetical ORF identified by homology. See FEBS Letters [2000] 487:31-36. /NOTE=Ymr013w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007622 // YMR013W-A SGDID:S0007622, Chr XIII from 298310-298390, Uncharacterized ORF // sgd // 11 // --- /// AJ010796 // Saccharomyces cerevisiae small nucleolar RNA SNR73. // gb // 11 // --- /// YMR013W-A // cdna:known chromosome:SGD1:XIII:298310:298390:1 gene:YMR013W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.05941579729406 -1.32649378104304 -1.26789637841406 -1.93272327161666 1.03769759557766 Max fold change below threshold 4 1.93272327161666 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773598_at SPBC1683.05.S1 --- 1.93246587588148 --- --- --- --- 5.89742279052734 8.06728553771973 11.3965682983398 7.23258781433105 0.171387001872063 0.111571997404099 0.0375977009534836 0.014160200022161 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1683.05 /DEF=thiamine transporter (predicted) --- --- --- --- --- --- SPBC1683.05 // |||thiamine transporter |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.74211036668885 1.36793406616153 -1.72637368397213 1.93246587588148 1.22639805067873 Max fold change below threshold 4 1.93246587588148 Max fold change below threshold AAAAPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1770241_at SPAC664.04c.S1 --- 1.93239052979652 --- --- --- --- 8.19867420196533 6.68099594116211 4.78041744232178 4.24276256561279 0.466064006090164 0.334473013877869 0.219482004642487 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC664.04c /GEN=rps1602 /DEF=40S ribosomal protein S16 --- --- --- --- --- --- SPAC664.04c // |rps1602|rps16-2, rps16|40S ribosomal protein S16|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.75238256173135 -1.22716347595015 1.10778844036588 -1.71505403050813 -1.93239052979652 Max fold change below threshold 4 1.93239052979652 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778682_at YOR058C.S1 Member of a family of microtubule-associated proteins (MAPs) that function at the mitotic spindle midzone; required for spindle elongation; undergoes cell cycle-regulated degradation by anaphase promoting complex; potential Cdc28p substrate 1.93211004111488 140.538887023926 269.726165771484 ASE1 92 // mitotic anaphase B // traceable author statement /// 30472 // mitotic spindle organization and biogenesis in nucleus // traceable author statement 5876 // spindle microtubule // traceable author statement /// 5880 // nuclear microtubule // traceable author statement 8017 // microtubule binding // traceable author statement /// 8017 // microtubule binding // inferred from direct assay 264.980743408203 143.931991577148 137.145782470703 274.471588134766 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR058C /GEN=ASE1 /DB_XREF=GI:14318440 /SEG=NC_001147:-433689,436346 /DEF=Member of a family of microtubule-associated proteins (MAPs) that function at the mitotic spindle midzone; required for spindle elongation; undergoes cell cycle-regulated degradation by anaphase promoting complex; potential Cdc28p substrate /NOTE=Ase1p; go_component: nuclear microtubule [goid GO:0005880] [evidence TAS] [pmid 9153752]; go_component: spindle microtubule [goid GO:0005876] [evidence TAS] [pmid 9153752]; go_function: microtubule binding [goid GO:0008017] [evidence IDA] [pmid 12591913]; go_function: microtubule binding [goid GO:0008017] [evidence TAS] [pmid 9036857]; go_process: mitotic anaphase B [goid GO:0000092] [evidence TAS] [pmid 9153752]; go_process: mitotic spindle assembly (sensu Fungi) [goid GO:0030472] [evidence TAS] [pmid 9153752] --- --- --- --- --- --- S0005584 // ASE1 SGDID:S0005584, Chr XV from 436346-433689, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017503 // cdna:Genscan chromosome:SGD1:XV:433689:436346:-1 // ensembl // 11 // --- /// YOR058C // cdna:known chromosome:SGD1:XV:433689:436346:-1 gene:YOR058C // ensembl // 11 // --- --- No cerevisiae_gene 1.75211395654142 -1.84101352662915 -1.20741626997188 -1.93211004111488 1.03581711110208 Max fold change below threshold 4 1.93211004111488 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774087_at YDL239C.S1 Protein required for spore wall formation, thought to mediate assembly of a Don1p-containing structure at the leading edge of the prospore membrane via interaction with spindle pole body components; potentially phosphorylated by Cdc28p 1.93203808071331 247.511177062988 260.442985534668 ADY3 6461 // protein complex assembly // inferred from mutant phenotype /// 30435 // sporulation // inferred from mutant phenotype /// 30435 // sporulation // inferred from expression pattern /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 5628 // prospore membrane // inferred from direct assay /// 5819 // spindle // inferred from direct assay 5515 // protein binding // inferred from mutant phenotype /// 5515 // protein binding // inferred from physical interaction 226.550155639648 252.696594238281 242.325759887695 294.335815429688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL239C /GEN=ADY3 /DB_XREF=GI:6319962 /SEG=NC_001136:-26403,28775 /DEF=Protein required for spore wall formation, thought to mediate assembly of a Don1p-containing structure at the leading edge of the prospore membrane via interaction with spindle pole body components; potentially phosphorylated by Cdc28p /NOTE=Ady3p; go_component: prospore membrane [goid GO:0005628] [evidence IDA] [pmid 11973299]; go_component: spindle [goid GO:0005819] [evidence IDA] [pmid 11973299]; go_function: protein binding [goid GO:0005515] [evidence IMP,IPI] [pmid 11973299]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP] [pmid 11973299]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence IMP] [pmid 11973299]; go_process: sporulation [goid GO:0030435] [evidence IEP,IMP] [pmid 11470404] --- --- --- --- --- --- S0002398 // ADY3 SGDID:S0002398, Chr IV from 28775-26403, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024923 // cdna:Genscan chromosome:SGD1:IV:26403:28775:-1 // ensembl // 11 // --- /// YDL239C // cdna:known chromosome:SGD1:IV:26403:28775:-1 gene:YDL239C // ensembl // 11 // --- --- No cerevisiae_gene -1.93203808071331 1.11541125860104 1.00634948388554 1.06963404727534 1.29920818018708 Max fold change below threshold 4 1.93203808071331 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770240_at YJL205C.S1 Protein of unknown function, involved in secretion of proteins that lack classical secretory signal sequences 1.93177492980761 807.784973144531 796.249725341797 NCE101 9306 // protein secretion // inferred from genetic interaction --- --- 787.512268066406 728.438537597656 887.131408691406 804.987182617188 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL205C /GEN=NCE101 /DB_XREF=GI:6322256 /SEG=NC_001142:-50139,50443 /DEF=involved in secretion of proteins that lack classical secretory signal sequences /NOTE=Nce101p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein secretion [goid GO:0009306] [evidence IGI] [pmid 8655575] --- --- --- --- --- AAC49349.1 // span:7-29 // numtm:1 /// S0003742 // span:7-29 // numtm:1 S0003742 // NCE101 SGDID:S0003742, Chr X from 50443-50412,50268-50139, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// U41658 // Saccharomyces cerevisiae non-classical export (NCE1) mRNA, complete cds. // gb // 11 // --- /// YJL205C // cdna:known chromosome:SGD1:X:50139:50443:-1 gene:YJL205C // ensembl // 11 // --- --- No cerevisiae_gene -1.93177492980761 -1.08109638276905 -1.07673818104982 1.12649852537485 1.02219002199634 Max fold change below threshold 4 1.93177492980761 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777392_at SPAC869.11.S1 --- 1.93114745294597 --- --- --- --- 7.47625303268433 10.8701620101929 14.4377470016479 11.9934406280518 0.24609400331974 0.0805663987994194 0.00415039015933871 0.0239257998764515 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC869.11 /DEF=amino acid permease family --- --- --- --- --- --- SPAC869.11 // ||SPAC922.08c|amino acid permease family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.14748764242046 1.45395854884408 1.29029081808927 1.93114745294597 1.60420475010937 Max fold change below threshold 4 1.93114745294597 Max fold change below threshold AAAAPP No 3 0 AAPP 2 2 0 No No 1 < x = 2
1778226_at YKR020W.S1 Component of the GARP (Golgi-associated retrograde protein) complex, Vps51p-Vps52p-Vps53p-Vps54p, which is required for the recycling of proteins from endosomes to the late Golgi; links the (VFT/GARP) complex to the SNARE Tlg1p 1.93072937522993 39.2403411865234 73.4574699401855 VPS51 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 7118 // budding cell apical bud growth // inferred from direct assay /// 16050 // vesicle organization and biogenesis // inferred from mutant phenotype /// 42147 // retrograde transport, endosome to Golgi // inferred from direct assay 938 // GARP complex // inferred from physical interaction /// 5794 // Golgi apparatus // inferred from direct assay 5515 // protein binding // inferred from physical interaction 67.8869781494141 35.6949081420898 42.785774230957 79.027961730957 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR020W /GEN=VPS51 /DB_XREF=GI:6322872 /SEG=NC_001143:+477981,478475 /DEF=whiskey (whi) mutant; forms a tetramer with VPS52, VPS53, and VPS54 /NOTE=Vps51p; go_component: GARP complex [goid GO:0000938] [evidence IPI] [pmid 12446664]; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 12377769]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12377769]; go_process: apical bud growth [goid GO:0007118] [evidence IDA] [pmid 11957109]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 12134085]; go_process: retrograde transport, endosome to Golgi [goid GO:0042147] [evidence IDA] [pmid 12686613]; go_process: vesicle organization and biogenesis [goid GO:0016050] [evidence IMP] [pmid 12446664] --- --- --- --- --- --- S0001728 // VPS51 SGDID:S0001728, Chr XI from 477981-478475, Verified ORF // sgd // 11 // --- /// GENSCAN00000018434 // cdna:Genscan chromosome:SGD1:XI:477981:478475:1 // ensembl // 11 // --- /// GENEFINDER00000023008 // cdna:GeneFinder chromosome:SGD1:XI:477981:478475:1 // ensembl // 11 // --- /// YKR020W // cdna:known chromosome:SGD1:XI:477981:478475:1 gene:YKR020W // ensembl // 11 // --- --- No cerevisiae_gene -1.93072937522993 -1.90186728816273 1.74347853840861 -1.58667172371268 1.16411076004919 Max fold change below threshold 4 1.93072937522993 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769818_at YOL011W.S1 Phospholipase B (lysophospholipase) involved in phospholipid metabolism; hydrolyzes phosphatidylinositol and phosphatidylserine and displays transacylase activity in vitro 1.93041092840043 1288.80648803711 839.789093017578 PLB3 6660 // phosphatidylserine catabolism // inferred from direct assay /// 6660 // phosphatidylserine catabolism // inferred from mutant phenotype /// 30384 // phosphoinositide metabolism // inferred from direct assay /// 30384 // phosphoinositide metabolism // inferred from mutant phenotype 5576 // extracellular region // inferred from direct assay /// 5886 // plasma membrane // inferred from sequence similarity 4622 // lysophospholipase activity // inferred from sequence similarity /// 4622 // lysophospholipase activity // inferred from mutant phenotype 810.232116699219 1564.08093261719 1013.53204345703 869.346069335938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL011W /GEN=PLB3 /DB_XREF=GI:6324563 /SEG=NC_001147:+305349,307409 /DEF=Phospholipase B /NOTE=Plb3p; go_component: extracellular [goid GO:0005576] [evidence IDA] [pmid 10497163]; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 10497163]; go_function: lysophospholipase activity [goid GO:0004622] [evidence IMP,ISS] [pmid 10497163]; go_process: phosphatidylserine catabolism [goid GO:0006660] [evidence IDA,IMP] [pmid 10497163]; go_process: phosphoinositide metabolism [goid GO:0030384] [evidence IDA,IMP] [pmid 10497163] --- --- --- --- --- --- S0005371 // PLB3 SGDID:S0005371, Chr XV from 305349-307409, Verified ORF // sgd // 10 // --- /// GENSCAN00000017459 // cdna:Genscan chromosome:SGD1:XV:305349:307409:1 // ensembl // 10 // --- /// GENEFINDER00000022727 // cdna:GeneFinder chromosome:SGD1:XV:305727:307409:1 // ensembl // 10 // --- /// YOL011W // cdna:known chromosome:SGD1:XV:305349:307409:1 gene:YOL011W // ensembl // 10 // --- --- No cerevisiae_gene 1.13792494570369 1.93041092840043 -1.25279846872714 1.2509156605468 1.07295928094969 Max fold change below threshold 4 1.93041092840043 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771798_at SPAC11H11.06.S1 --- 1.93005835233996 --- --- --- --- 1.75082516670227 1.44135522842407 3.37919473648071 1.63834035396576 0.753906011581421 0.805419981479645 0.567627012729645 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11H11.06 /GEN=arp2 /DEF=ARP23 actin-organizing complex --- --- --- --- --- --- SPAC11H11.06 // |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex Arp2p subunit|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.24631507104317 -1.21470761140303 1.91448211362086 1.93005835233996 -1.0686577807012 Max fold change below threshold 1 1.93005835233996 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779142_x_at YLL025W.S1 Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth /// Hypothetical protein 1.92995237463323 333.250671386719 582.076507568359 DAN2 --- 9277 // cell wall (sensu Fungi) // inferred from sequence similarity --- 559.227966308594 289.762573242188 376.73876953125 604.925048828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL025W /GEN=HSP104 /DB_XREF=GI:6323003 /SEG=NC_001144:+94746,95120 /DEF=Hypothetical ORF /NOTE=Yll025wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004027 // span:7-29 // numtm:1 S0003948 // YLL025W SGDID:S0003948, Chr XII from 94746-95120, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017702 // cdna:Genscan chromosome:SGD1:XII:94746:95120:1 // ensembl // 11 // --- /// GENEFINDER00000024703 // cdna:GeneFinder chromosome:SGD1:XII:94746:95120:1 // ensembl // 11 // --- /// YLL025W // cdna:known chromosome:SGD1:XII:94746:95120:1 gene:YLL025W // ensembl // 11 // --- --- No cerevisiae_gene -1.87579845219452 -1.92995237463323 1.53038884719065 -1.4843918692106 1.08171458738227 Max fold change below threshold 4 1.92995237463323 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769339_at YML035C.S1 AMP deaminase, tetrameric enzyme that catalyzes the deamination of AMP to form IMP and ammonia; may be involved in regulation of intracellular adenine nucleotide pools 1.92982793511526 2134.47937011719 1233.40075683594 AMD1 6163 // purine nucleotide metabolism // inferred from curator 5737 // cytoplasm // inferred from direct assay 3876 // AMP deaminase activity // inferred from direct assay 1138.80578613281 2197.69921875 2071.25952148438 1327.99572753906 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML035C /GEN=AMD1 /DB_XREF=GI:6323606 /SEG=NC_001145:-206428,208860 /DEF=AMP deaminase, tetrameric enzyme that catalyzes the deamination of AMP to form IMP and ammonia; may be involved in regulation of intracellular adenine nucleotide pools /NOTE=Amd1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: AMP deaminase activity [goid GO:0003876] [evidence IDA] [pmid 8241153]; go_process: purine nucleotide metabolism [goid GO:0006163] [evidence IC] [pmid 8241153] --- --- --- --- --- --- S0004498 // AMD1 SGDID:S0004498, Chr XIII from 208860-206428, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018688 // cdna:Genscan chromosome:SGD1:XIII:206428:208860:-1 // ensembl // 11 // --- /// GENEFINDER00000022061 // cdna:GeneFinder chromosome:SGD1:XIII:206428:208860:-1 // ensembl // 11 // --- /// YML035C // cdna:known chromosome:SGD1:XIII:206428:208860:-1 gene:YML035C // ensembl // 11 // --- --- No cerevisiae_gene 1.11560454350512 1.92982793511526 1.03001373016059 1.81879961158084 1.16613011956034 Max fold change below threshold 4 1.92982793511526 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771549_at YNR031C.S1 MAP kinase kinase kinase of the HOG1 mitogen-activated signaling pathway; interacts with Ssk1p, leading to autophosphorylation and activation of Ssk2p which phosphorylates Pbs2p; also mediates actin cytoskeleton recovery from osmotic stress 1.92922401525125 469.126174926758 727.22607421875 SSK2 168 // activation of MAPKK activity during osmolarity sensing // traceable author statement /// 6468 // protein amino acid phosphorylation // traceable author statement /// 6970 // response to osmotic stress // inferred from mutant phenotype /// 6970 // response to osmotic stress // inferred from genetic interaction /// 7231 // osmosensory signaling pathway // traceable author statement /// 30036 // actin cytoskeleton organization and biogenesis // inferred from direct assay 5829 // cytosol // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 4709 // MAP kinase kinase kinase activity // traceable author statement 711.880187988281 391.219085693359 547.033264160156 742.571960449219 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR031C /GEN=SSK2 /DB_XREF=GI:6324358 /SEG=NC_001146:-680693,685432 /DEF=Suppressor of Sensor Kinase (SLN1) /NOTE=Ssk2p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 12181352]; go_function: MAP kinase kinase kinase activity [goid GO:0004709] [evidence TAS] [pmid 7624781]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence IDA] [pmid 12181352]; go_process: activation of MAPKK during osmolarity sensing [goid GO:0000168] [evidence TAS] [pmid 7624781]; go_process: osmosensory signaling pathway [goid GO:0007231] [evidence TAS] [pmid 7624781]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 7624781] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 5.0E-68 /// hanks // 2.1.5 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DmCamKII // 9.0E-69 --- --- S0005314 // SSK2 SGDID:S0005314, Chr XIV from 685433-680694, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020635 // cdna:GeneFinder chromosome:SGD1:XIV:680600:682272:-1 // ensembl // 11 // --- /// GENSCAN00000020061 // cdna:Genscan chromosome:SGD1:XIV:680694:685433:-1 // ensembl // 11 // --- /// YNR031C // cdna:known chromosome:SGD1:XIV:680694:685433:-1 gene:YNR031C // ensembl // 11 // --- --- No cerevisiae_gene -1.92922401525125 -1.81964585579104 1.07308303850192 -1.30134716593736 1.04311367696251 Max fold change below threshold 4 1.92922401525125 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780013_at YLR284C.S1 Peroxisomal delta3,delta2-enoyl-CoA isomerase, hexameric protein that converts 3-hexenoyl-CoA to trans-2-hexenoyl-CoA, essential for the beta-oxidation of unsaturated fatty acids, oleate-induced 1.92911195529703 1783.79675292969 1075.89291381836 ECI1 6635 // fatty acid beta-oxidation // inferred from direct assay 5777 // peroxisome // inferred from direct assay 4165 // dodecenoyl-CoA delta-isomerase activity // inferred from mutant phenotype /// 4165 // dodecenoyl-CoA delta-isomerase activity // inferred from direct assay 1013.25286865234 1612.91528320313 1954.67822265625 1138.53295898438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR284C /GEN=ECI1 /DB_XREF=GI:6323314 /SEG=NC_001144:-706200,707042 /DEF=Peroxisomal delta3,delta2-enoyl-CoA isomerase, hexameric protein that converts 3-hexenoyl-CoA to trans-2-hexenoyl-CoA, essential for the beta-oxidation of unsaturated fatty acids, oleate-induced /NOTE=Eci1p; go_component: peroxisome [goid GO:0005777] [evidence IDA] [pmid 9837886]; go_function: dodecenoyl-CoA delta-isomerase activity [goid GO:0004165] [evidence IDA,IMP] [pmid 9837886]; go_process: fatty acid beta-oxidation [goid GO:0006635] [evidence IDA] [pmid 9837886] --- --- --- --- --- --- S0004274 // ECI1 SGDID:S0004274, Chr XII from 707042-706200, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018040 // cdna:Genscan chromosome:SGD1:XII:706200:707042:-1 // ensembl // 11 // --- /// YLR284C // cdna:known chromosome:SGD1:XII:706200:707042:-1 gene:YLR284C // ensembl // 11 // --- --- No cerevisiae_gene -1.83841045067101 1.59181911357266 1.49910111567673 1.92911195529703 1.12364148595864 Max fold change below threshold 4 1.92911195529703 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779272_at YGL056C.S1 One of two S. cerevisiae homologs (Sds23p and Sds24p) of the Schizosaccharomyces pombe Sds23 protein, which genetic studies have implicated in APC/cyclosome regulation 1.92902954013571 1528.00799560547 1298.26525878906 SDS23 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1249.45043945313 1145.84436035156 1910.17163085938 1347.080078125 0.000732421991415322 0.00415039015933871 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL056C /GEN=SDS23 /DB_XREF=GI:6321382 /SEG=NC_001139:-396039,397622 /DEF=homolog of pombe SDS23; localizes to spindle pole body /NOTE=Sds23p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003024 // SDS23 SGDID:S0003024, Chr VII from 397624-396041, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019302 // cdna:Genscan chromosome:SGD1:VII:396041:397624:-1 // ensembl // 11 // --- /// GENEFINDER00000021560 // cdna:GeneFinder chromosome:SGD1:VII:396041:397624:-1 // ensembl // 11 // --- /// YGL056C // cdna:known chromosome:SGD1:VII:396041:397624:-1 gene:YGL056C // ensembl // 11 // --- --- No cerevisiae_gene 1.92902954013571 -1.09041898069802 1.20489750474281 1.52880944337051 1.07813806421534 Max fold change below threshold 4 1.92902954013571 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771534_at YPL193W.S1 Protein involved in the assembly of 60S ribosomal subunits; functionally interacts with Dbp6p; functions in a late nucleoplasmic step of the assembly 1.92883844755789 128.690444946289 167.016052246094 RSA1 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype 5654 // nucleoplasm // inferred from direct assay --- 143.850189208984 158.85693359375 98.5239562988281 190.181915283203 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL193W /GEN=RSA1 /DB_XREF=GI:6325063 /SEG=NC_001148:+181402,182547 /DEF=RiboSome Assembly /NOTE=Rsa1p; go_component: nucleoplasm [goid GO:0005654] [evidence IDA] [pmid 10567587]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 10567587] --- --- --- --- --- --- S0006114 // RSA1 SGDID:S0006114, Chr XVI from 181402-182547, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021027 // cdna:GeneFinder chromosome:SGD1:XVI:181555:182547:1 // ensembl // 11 // --- /// YPL193W // cdna:known chromosome:SGD1:XVI:181402:182547:1 gene:YPL193W // ensembl // 11 // --- --- No cerevisiae_gene -1.03827194730493 1.10432203438373 1.92883844755789 -1.46005291111818 1.32208317784628 Max fold change below threshold 4 1.92883844755789 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779936_at YOL096C.S1 O-methyltransferase, catalyzes two different O-methylation steps in ubiquinone (Coenzyme Q) biosynthesis; component of a mitochondrial ubiquinone-synthesizing complex 1.92882254055879 904.099914550781 1311.44268798828 COQ3 6743 // ubiquinone metabolism // inferred from mutant phenotype /// 6744 // ubiquinone biosynthesis // inferred from direct assay 5739 // mitochondrion // inferred from direct assay /// 5743 // mitochondrial inner membrane // inferred from direct assay /// 19898 // extrinsic to membrane // inferred from direct assay 4395 // hexaprenyldihydroxybenzoate methyltransferase activity // inferred from mutant phenotype 1261.12219238281 653.830078125 1154.36975097656 1361.76318359375 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL096C /GEN=COQ3 /DB_XREF=GI:37362692 /SEG=NC_001147:-138106,139044 /DEF=O-methyltransferase, catalyzes two different O-methylation steps in ubiquinone (Coenzyme Q) biosynthesis /NOTE=Coq3p; go_component: extrinsic to membrane [goid GO:0019898] [evidence IDA] [pmid 10419476]; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 10419476]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 10760477]; go_function: hexaprenyldihydroxybenzoate methyltransferase activity [goid GO:0004395] [evidence IMP] [pmid 1885593]; go_process: ubiquinone biosynthesis [goid GO:0006744] [evidence IDA] [pmid 10419476]; go_process: ubiquinone metabolism [goid GO:0006743] [evidence IMP] [pmid 1885593] --- --- --- --- --- --- S0005456 // COQ3 SGDID:S0005456, Chr XV from 139044-138106, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017389 // cdna:Genscan chromosome:SGD1:XV:138106:139044:-1 // ensembl // 11 // --- /// GENEFINDER00000022620 // cdna:GeneFinder chromosome:SGD1:XV:138106:138855:-1 // ensembl // 11 // --- /// YOL096C // cdna:known chromosome:SGD1:XV:138106:139044:-1 gene:YOL096C // ensembl // 11 // --- --- No cerevisiae_gene -1.8551937539321 -1.92882254055879 1.22206406996032 -1.09247681803507 1.07980272793454 Max fold change below threshold 4 1.92882254055879 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776993_at YER001W.S1 Alpha-1,3-mannosyltransferase, integral membrane glycoprotein of the Golgi complex, required for addition of alpha1,3-mannose linkages to N-linked and O-linked oligosaccharides, one of five S. cerevisiae proteins of the MNN1 family 1.92861335145979 316.115646362305 189.952163696289 MNN1 6491 // N-glycan processing // inferred from mutant phenotype /// 6493 // O-linked glycosylation // inferred from direct assay 5794 // Golgi apparatus // inferred from direct assay 33 // alpha-1,3-mannosyltransferase activity // inferred from mutant phenotype 182.142364501953 280.949096679688 351.282196044922 197.761962890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER001W /GEN=MNN1 /DB_XREF=GI:6320837 /SEG=NC_001137:+153519,155807 /DEF=Alpha-1,3-mannosyltransferase, integral membrane glycoprotein of the Golgi complex, required for addition of alpha1,3-mannose linkages to N-linked and O-linked oligosaccharides, one of five S. cerevisiae proteins of the MNN1 family /NOTE=Mnn1p; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 7962051]; go_function: alpha-1,3-mannosyltransferase activity [goid GO:0000033] [evidence IMP] [pmid 8146181]; go_process: N-glycan processing [goid GO:0006491] [evidence IMP] [pmid 8146181]; go_process: O-linked glycosylation [goid GO:0006493] [evidence IDA] [pmid 7962051] --- --- --- --- --- S0000803 // span:13-35 // numtm:1 S0000803 // MNN1 SGDID:S0000803, Chr V from 153519-155807, Verified ORF // sgd // 11 // --- /// GENSCAN00000016803 // cdna:Genscan chromosome:SGD1:V:153519:155807:1 // ensembl // 11 // --- /// GENEFINDER00000019650 // cdna:GeneFinder chromosome:SGD1:V:153519:155807:1 // ensembl // 11 // --- /// YER001W // cdna:known chromosome:SGD1:V:153519:155807:1 gene:YER001W // ensembl // 11 // --- --- No cerevisiae_gene 1.63829867799648 1.54246980074026 1.43079876302706 1.92861335145979 1.08575488976099 Max fold change below threshold 4 1.92861335145979 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776863_at YAR042W.S1 Protein similar to mammalian oxysterol-binding protein; contains ankyrin repeats; localizes to the Golgi and the nucleus-vacuole junction 1.92855110382848 469.811614990234 358.189926147461 SWH1 6694 // steroid biosynthesis // inferred from genetic interaction /// 6694 // steroid biosynthesis // inferred from mutant phenotype 138 // Golgi trans cisterna // inferred from direct assay /// 5769 // early endosome // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay 5545 // phosphatidylinositol binding // inferred from sequence similarity /// 5545 // phosphatidylinositol binding // inferred from direct assay 333.225494384766 296.980834960938 642.642395019531 383.154357910156 0.000732421991415322 0.00585938012227416 0.00292969006113708 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR042W /GEN=SWH1 /DB_XREF=GI:37362612 /SEG=NC_001133:+192615,196181 /DEF=Similar to mammalian oxysterol-binding protein /NOTE=Swh1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.7.Seryl-tRNA synthetase (SerRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) // 0.0469999983906746 --- S0000081 // SWH1 SGDID:S0000081, Chr I from 192613-196179, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018208 // cdna:GeneFinder chromosome:SGD1:I:192613:196179:1 // ensembl // 11 // --- /// GENSCAN00000020396 // cdna:Genscan chromosome:SGD1:I:192613:196179:1 // ensembl // 11 // --- /// YAR042W // cdna:known chromosome:SGD1:I:192613:196179:1 gene:YAR042W // ensembl // 11 // --- --- No cerevisiae_gene -1.15508489278649 -1.12204376564769 1.39594224193441 1.92855110382848 1.14983506474369 Max fold change below threshold 4 1.92855110382848 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1778842_at YMR112C.S1 14 Kd mediator subunit of RNA polymerase II holoenzyme 1.92850409939685 366.314712524414 644.974822998047 MED11 6366 // transcription from RNA polymerase II promoter // inferred from physical interaction 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from physical interaction 622.680297851563 409.746887207031 322.882537841797 667.269348144531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR112C /GEN=MED11 /DB_XREF=GI:6323759 /SEG=NC_001145:-494099,494494 /DEF=14 Kd mediator subunit of RNA polymerase II holoenzyme /NOTE=Med11p; go_component: mediator complex [goid GO:0000119] [evidence IDA] [pmid 9812975]; go_function: RNA polymerase II transcription mediator activity [goid GO:0016455] [evidence IPI] [pmid 9812975]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IPI] [pmid 9812975] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 6.40000009536743 --- S0004718 // MED11 SGDID:S0004718, Chr XIII from 494494-494099, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018806 // cdna:Genscan chromosome:SGD1:XIII:494099:494494:-1 // ensembl // 10 // --- /// YMR112C // cdna:known chromosome:SGD1:XIII:494099:494494:-1 gene:YMR112C // ensembl // 10 // --- --- No cerevisiae_gene -1.27101280544286 -1.51967059980847 1.06873499435503 -1.92850409939685 1.07160825618992 Max fold change below threshold 4 1.92850409939685 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770189_at YHR007C-A.S1 Identified by expression profiling and mass spectrometry 1.92827903429767 179.987800598145 193.257865905762 --- --- --- --- 165.82861328125 173.500015258789 186.4755859375 220.687118530273 0.000732421991415322 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR007C-A /GEN=ERG11 /DB_XREF=GI:33438804 /SEG=NC_001140:-122544,122759 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Yhr007c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028830 // span:21-43 // numtm:1 S0028830 // YHR007C-A SGDID:S0028830, Chr VIII from 122759-122544, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YHR007C-A // cdna:known chromosome:SGD1:VIII:122544:122759:-1 gene:YHR007C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.57747403692984 1.04626102712762 -1.92827903429767 1.12450790154792 1.33081447262652 Max fold change below threshold 4 1.92827903429767 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777568_at SPAC13C5.03.S1 --- 1.92797663789041 --- --- --- --- 12.4337720870972 10.9827442169189 10.4119672775269 9.60257720947266 0.00415039015933871 0.00805663969367743 0.0461426004767418 0.018554700538516 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13C5.03 /GEN=tht1 /DEF=involved in nuclear fusion (karyogamy) (required) (PMID 9442101) --- --- --- --- --- --- SPAC13C5.03 // |tht1||nuclear membrane protein involved in karyogamy |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.92797663789041 -1.13211888044728 -1.34362499894367 -1.19418086473765 -1.29483698135034 Max fold change below threshold 4 1.92797663789041 Max fold change below threshold PPPPPP No 3 0 PPPP 0 4 0 No No 3 < x
1769325_at YDL216C.S1 Catalytic subunit of the COP9 signalosome (CSN) complex that acts as an isopeptidase in cleaving the ubiquitin-like protein Nedd8 from SCF ubiquitin ligases; metalloendopeptidase involved in the adaptation to pheromone signaling 1.92683182387479 142.663028717041 224.67798614502 RRI1 338 // protein deneddylation // inferred from mutant phenotype /// 754 // adaptation to pheromone during conjugation with cellular fusion // inferred from mutant phenotype 8180 // signalosome complex // traceable author statement /// 8180 // signalosome complex // inferred from direct assay 4222 // metalloendopeptidase activity // inferred from mutant phenotype 204.277984619141 118.441062927246 166.884994506836 245.077987670898 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL216C /GEN=RRI1 /DB_XREF=GI:6319985 /SEG=NC_001136:-68998,70365 /DEF=subunit of COP9 signalosome (CSN) /NOTE=Rri1p; go_component: signalosome complex [goid GO:0008180] [evidence TAS] [pmid 12186635]; go_component: signalosome complex [goid GO:0008180] [evidence IDA] [pmid 12446563]; go_function: metalloendopeptidase activity [goid GO:0004222] [evidence IMP] [pmid 12183637]; go_process: adaptation to pheromone during conjugation with cellular fusion [goid GO:0000754] [evidence IMP] [pmid 12446563]; go_process: protein deneddylation [goid GO:0000338] [evidence IMP] [pmid 12446563] --- --- --- --- --- --- S0002375 // RRI1 SGDID:S0002375, Chr IV from 70365-68998, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023603 // cdna:GeneFinder chromosome:SGD1:IV:68998:70365:-1 // ensembl // 11 // --- /// GENSCAN00000024941 // cdna:Genscan chromosome:SGD1:IV:68998:70365:-1 // ensembl // 11 // --- /// YDL216C // cdna:known chromosome:SGD1:IV:68998:70365:-1 gene:YDL216C // ensembl // 11 // --- --- No cerevisiae_gene -1.92683182387479 -1.72472265589698 1.81224796568636 -1.22406442366376 1.19972785186728 Max fold change below threshold 4 1.92683182387479 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777650_at YMR243C.S1 Vacuolar membrane zinc transporter, transports zinc from the cytosol into the vacuole for storage; also has a role in resistance to zinc shock resulting from a sudden influx of zinc into the cytoplasm 1.92670261991522 1699.48327636719 2308.59191894531 ZRC1 6749 // glutathione metabolism // non-traceable author statement /// 6824 // cobalt ion transport // non-traceable author statement /// 6829 // zinc ion transport // non-traceable author statement /// 6882 // zinc ion homeostasis // inferred from mutant phenotype 324 // vacuole (sensu Fungi) // inferred from direct assay 5385 // zinc ion transporter activity // inferred from mutant phenotype /// 15082 // di-, tri-valent inorganic cation transporter activity // inferred from sequence similarity 2343.900390625 1671.19714355469 1727.76940917969 2273.28344726563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR243C /GEN=ZRC1 /DB_XREF=GI:6323899 /SEG=NC_001145:-754837,756165 /DEF=Vacuolar membrane zinc transporter, transports zinc from the cytosol into the vacuole for storage; also has a role in resistance to zinc shock resulting from a sudden influx of zinc into the cytoplasm /NOTE=Zrc1p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 9712830]; go_function: di-, tri-valent inorganic cation transporter activity [goid GO:0015082] [evidence ISS] [pmid 9075641]; go_function: zinc ion transporter activity [goid GO:0005385] [evidence IMP] [pmid 2693940]; go_process: cobalt ion transport [goid GO:0006824] [evidence NAS] [pmid 8058041]; go_process: glutathione metabolism [goid GO:0006749] [evidence NAS] [pmid 8867889]; go_process: zinc ion homeostasis [goid GO:0006882] [evidence IMP] [pmid 10856230]; go_process: zinc ion transport [goid GO:0006829] [evidence NAS] [pmid 8058041] --- --- --- --- --- S0004856 // span:7-29,34-56,77-99,114-133,235-257,270-287 // numtm:6 S0004856 // ZRC1 SGDID:S0004856, Chr XIII from 756165-754837, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018920 // cdna:Genscan chromosome:SGD1:XIII:754837:756165:-1 // ensembl // 11 // --- /// GENEFINDER00000021909 // cdna:GeneFinder chromosome:SGD1:XIII:754837:756165:-1 // ensembl // 11 // --- /// YMR243C // cdna:known chromosome:SGD1:XIII:754837:756165:-1 gene:YMR243C // ensembl // 11 // --- --- No cerevisiae_gene 1.92670261991522 -1.40252776260702 -1.48663270032136 -1.356604867624 -1.03106385323146 Max fold change below threshold 4 1.92670261991522 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775905_at SPCC569.04.S1 --- 1.92668059977206 --- --- --- --- 3.49249005317688 5.82287311553955 6.72891283035278 4.1070294380188 0.696289002895355 0.219482004642487 0.0676269978284836 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC569.04 /DEF=hypothetical protein --- --- --- --- --- --- SPCC569.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.38605248591339 1.6672554615418 1.45964522804794 1.92668059977206 1.17596023910875 Max fold change below threshold 4 1.92668059977206 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777076_at SPBC1778.06c.S1 --- 1.92660443401358 --- --- --- --- 6.62793016433716 11.2137537002563 12.7693996429443 8.49582099914551 0.24609400331974 0.194580003619194 0.194580003619194 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1778.06c /GEN=fim1 /DEF=fimbrin --- --- --- --- --- --- SPBC1778.06c // |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.64027221443912 1.69189376203661 -1.34017750791248 1.92660443401358 1.28182114000822 Max fold change below threshold 4 1.92660443401358 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775590_at YBR107C.S1 Protein with a role in kinetochore function, localizes to the outer kinetochore in a Ctf19p-dependent manner, interacts with Chl4p and Ctf19p 1.92626064778804 195.22737121582 316.068313598633 IML3 7059 // chromosome segregation // traceable author statement 942 // outer kinetochore of condensed nuclear chromosome // inferred from direct assay --- 290.324096679688 150.719009399414 239.735733032227 341.812530517578 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR107C /GEN=IML3 /DB_XREF=GI:6319583 /SEG=NC_001134:-453750,454487 /DEF=Protein with a role in kinetochore function, localizes to the outer kinetochore in a Ctf19p-dependent manner, interacts with Chl4p and Ctf19p /NOTE=Iml3p; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IPI] [pmid 11361335]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromosome segregation [goid GO:0007059] [evidence TAS] [pmid 11361335] --- --- --- --- --- --- S0000311 // IML3 SGDID:S0000311, Chr II from 454524-453787, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021225 // cdna:Genscan chromosome:SGD1:II:453787:454524:-1 // ensembl // 11 // --- /// GENEFINDER00000022403 // cdna:GeneFinder chromosome:SGD1:II:453787:454524:-1 // ensembl // 11 // --- /// YBR107C // cdna:known chromosome:SGD1:II:453787:454524:-1 gene:YBR107C // ensembl // 11 // --- --- No cerevisiae_gene 1.44608024100894 -1.92626064778804 1.64872589437569 -1.21101720218179 1.17734812379249 Max fold change below threshold 4 1.92626064778804 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779153_at YBR237W.S1 RNA helicase in the DEAD-box family, necessary for prespliceosome formation, bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA 1.92505704061795 262.794761657715 471.267471313477 PRP5 370 // U2-type nuclear mRNA branch site recognition // traceable author statement 5681 // spliceosome complex // traceable author statement 4004 // ATP-dependent RNA helicase activity // traceable author statement /// 31202 // RNA splicing factor activity, transesterification mechanism // traceable author statement 448.330322265625 234.484451293945 291.105072021484 494.204620361328 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR237W /GEN=PRP5 /DB_XREF=GI:6319714 /SEG=NC_001134:+691926,694475 /DEF=RNA helicase in the DEAD-box family /NOTE=Prp5p; go_component: spliceosome complex [goid GO:0005681] [evidence TAS] [pmid 9476892]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 9476892]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence TAS] [pmid 9476892]; go_process: U2-type nuclear mRNA branch site recognition [goid GO:0000370] [evidence TAS] --- --- --- --- --- --- S0000441 // PRP5 SGDID:S0000441, Chr II from 691964-694513, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022148 // cdna:GeneFinder chromosome:SGD1:II:691964:694513:1 // ensembl // 11 // --- /// GENSCAN00000021328 // cdna:Genscan chromosome:SGD1:II:692411:694513:1 // ensembl // 11 // --- /// YBR237W // cdna:known chromosome:SGD1:II:691964:694513:1 gene:YBR237W // ensembl // 11 // --- --- No cerevisiae_gene -1.92505704061795 -1.9119831604681 -1.0091653326431 -1.54009794179243 1.10232254170068 Max fold change below threshold 4 1.92505704061795 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779098_at YBR020W.S1 Galactokinase, phosphorylates alpha-D-galactose to alpha-D-galactose-1-phosphate in the first step of galactose catabolism; expression regulated by Gal4p 1.92485850180157 115.819953918457 90.8535423278809 GAL1 6012 // galactose metabolism // traceable author statement --- 4335 // galactokinase activity // traceable author statement 93.2204132080078 113.387054443359 118.252853393555 88.4866714477539 0.0107421996071935 0.0375977009534836 0.0239257998764515 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR020W /GEN=GAL1 /DB_XREF=GI:6319494 /SEG=NC_001134:+278983,280569 /DEF=Galactokinase, phosphorylates alpha-D-galactose to alpha-D-galactose-1-phosphate in the first step of galactose catabolism; expression regulated by Gal4p /NOTE=Gal1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: galactokinase activity [goid GO:0004335] [evidence TAS] [pmid 7601342]; go_process: galactose metabolism [goid GO:0006012] [evidence TAS] [pmid 7601342] --- --- --- --- --- --- S0000224 // GAL1 SGDID:S0000224, Chr II from 279021-280607, Verified ORF // sgd // 11 // --- /// GENSCAN00000021155 // cdna:Genscan chromosome:SGD1:II:279021:280607:1 // ensembl // 11 // --- /// GENEFINDER00000022234 // cdna:GeneFinder chromosome:SGD1:II:279021:280607:1 // ensembl // 11 // --- /// YBR020W // cdna:known chromosome:SGD1:II:279021:280607:1 gene:YBR020W // ensembl // 11 // --- --- No cerevisiae_gene -1.92485850180157 1.21633288827365 1.10597511037693 1.26852959908782 -1.05349666433152 Max fold change below threshold 4 1.92485850180157 Max fold change below threshold PPPPPP No 3 0 PPPP 0 4 0 No No 3 < x
1775493_at YMR065W.S1 Protein required for nuclear membrane fusion during karyogamy, localizes to the membrane with a soluble portion in the endoplasmic reticulum lumen, may form a complex with Jem1p and Kar2p; expression of the gene is regulated by pheromone 1.92466418743818 215.10807800293 423.688003540039 KAR5 742 // karyogamy during conjugation with cellular fusion // inferred from genetic interaction /// 742 // karyogamy during conjugation with cellular fusion // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // inferred from direct assay --- 397.634399414063 223.616790771484 206.599365234375 449.741607666016 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR065W /GEN=KAR5 /DB_XREF=GI:6323710 /SEG=NC_001145:+399701,401215 /DEF=appears to be required for the completion of nuclear membrane fusion and may play a role in the organization of the membrane fusion complex /NOTE=Kar5p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 9382856]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: karyogamy during conjugation with cellular fusion [goid GO:0000742] [evidence IGI,IMP] [pmid 10069807] --- --- --- --- --- --- S0004669 // KAR5 SGDID:S0004669, Chr XIII from 399701-401215, Verified ORF // sgd // 11 // --- /// GENSCAN00000018767 // cdna:Genscan chromosome:SGD1:XIII:399710:401215:1 // ensembl // 11 // --- /// GENEFINDER00000021936 // cdna:GeneFinder chromosome:SGD1:XIII:399710:401215:1 // ensembl // 11 // --- /// YMR065W // cdna:known chromosome:SGD1:XIII:399701:401215:1 gene:YMR065W // ensembl // 11 // --- --- No cerevisiae_gene 1.00603775195162 -1.77819562673363 -1.01621102574368 -1.92466418743818 1.13104300917812 Max fold change below threshold 4 1.92466418743818 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771274_at YOR351C.S1 Meiosis-specific serine/threonine protein kinase, functions in meiotic checkpoint, phosphorylates Red1p, interacts with Hop1p; required for meiotic recombination and normal spore viability 1.92464252269312 42.331823348999 20.9658393859863 MEK1 6468 // protein amino acid phosphorylation // inferred from direct assay /// 7126 // meiosis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 4674 // protein serine/threonine kinase activity // inferred from direct assay /// 4674 // protein serine/threonine kinase activity // inferred from mutant phenotype 23.0663776397705 40.269115447998 44.39453125 18.8653011322021 0.00415039015933871 0.000732421991415322 0.000244141003349796 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR351C /GEN=MEK1 /DB_XREF=GI:6324927 /SEG=NC_001147:-995013,996506 /DEF=Disp. for chr. pairing & chr. condensation seen by in situ hybrid. Required for full double strand breaks, normal length synaptonemal complexes, meiotic recomb. & spore viability. mek1 is rescued by spo13 & in early recomb. function /NOTE=Mek1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 7926789]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence IMP] [pmid 10786836]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence IDA] [pmid 9832507]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 1752435]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 9832507] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-54 /// hanks // 2.1.18 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; MRE4 // 1.0E-156 --- --- S0005878 // MEK1 SGDID:S0005878, Chr XV from 996506-995013, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017803 // cdna:Genscan chromosome:SGD1:XV:995013:996506:-1 // ensembl // 11 // --- /// GENEFINDER00000022833 // cdna:GeneFinder chromosome:SGD1:XV:995013:996458:-1 // ensembl // 11 // --- /// YOR351C // cdna:known chromosome:SGD1:XV:995013:996506:-1 gene:YOR351C // ensembl // 11 // --- --- No cerevisiae_gene 1.12975381250556 1.74579277582653 1.03638390282323 1.92464252269312 -1.22268801744157 Max fold change below threshold 4 1.92464252269312 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777187_at SPBC18H10.15.S1 --- 1.92443977332771 --- --- --- --- 5.25003719329834 8.8432502746582 2.72808599472046 4.86583805084229 0.432372987270355 0.366210997104645 0.334473013877869 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18H10.15 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPBC18H10.15 // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.35301661186766 1.68441669059918 1.79109576039366 -1.92443977332771 -1.07895847301978 Max fold change below threshold 4 1.92443977332771 Max fold change below threshold AAAAAM No 4 0 AAAM 3 0 1 No No x = 1
1771176_at YBR023C.S1 Chitin synthase III, catalyzes the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for synthesis of the majority of cell wall chitin, the chitin ring during bud emergence, and spore wall chitosan 1.92439315061808 850.548828125 1404.60455322266 CHS3 910 // cytokinesis // traceable author statement /// 6038 // cell wall chitin biosynthesis // traceable author statement /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 131 // incipient bud site // inferred from direct assay /// 5628 // prospore membrane // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 45009 // chitosome // inferred from direct assay 4100 // chitin synthase activity // inferred from mutant phenotype 1391.03344726563 722.842651367188 978.255004882813 1418.17565917969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR023C /GEN=CHS3 /DB_XREF=GI:6319497 /SEG=NC_001134:-284390,287887 /DEF=Required for chitin synthesis. Enzyme responsible for the hyperaccumulation of chitin in response to cell wall stress. /NOTE=Chs3p; go_component: contractile ring (sensu Saccharomyces) [goid GO:0000142] [evidence IDA] [pmid 10652251]; go_function: chitin synthase activity [goid GO:0004100] [evidence TAS] [pmid 9760183]; go_process: cell wall chitin biosynthesis [goid GO:0006038] [evidence TAS] [pmid 9760183]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251]; go_process: response to osmotic stress [goid GO:0006970] [evidence IMP] [pmid 10652251] --- --- --- --- --- S0000227 // span:168-190,203-224,454-476,1029-1051,1055-1077,1084-1106 // numtm:6 S0000227 // CHS3 SGDID:S0000227, Chr II from 287925-284428, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021157 // cdna:Genscan chromosome:SGD1:II:284428:287925:-1 // ensembl // 11 // --- /// GENEFINDER00000022166 // cdna:GeneFinder chromosome:SGD1:II:284428:287925:-1 // ensembl // 11 // --- /// YBR023C // cdna:known chromosome:SGD1:II:284428:287925:-1 gene:YBR023C // ensembl // 11 // --- --- No cerevisiae_gene -1.35871284973647 -1.92439315061808 -1.2042502879228 -1.42195382627484 1.01951226404183 Max fold change below threshold 4 1.92439315061808 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777114_at YPR120C.S1 B-type cyclin involved in DNA replication during S phase; activates Cdc28p to promote initiation of DNA synthesis; functions in formation of mitotic spindles along with Clb3p and Clb4p; most abundant during late G1 phase 1.92424224555438 47.3597583770752 86.3722114562988 CLB5 79 // regulation of cyclin dependent protein kinase activity // traceable author statement /// 82 // G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 82 // G1/S transition of mitotic cell cycle // inferred from expression pattern /// 86 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 86 // G2/M transition of mitotic cell cycle // inferred from expression pattern /// 6279 // premeiotic DNA synthesis // inferred from genetic interaction /// 6279 // premeiotic DNA synthesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 16538 // cyclin-dependent protein kinase regulator activity // traceable author statement 68.5735321044922 55.5018653869629 39.2176513671875 104.170890808105 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR120C /GEN=CLB5 /DB_XREF=GI:6325377 /SEG=NC_001148:-773871,775178 /DEF=role in DNA replication during S phase; additional functional role in formation of mitotic spindles along with Clb3 and Clb4 /NOTE=Clb5p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10848575]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IEP,IMP] [pmid 8319908]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence IEP,IMP] [pmid 8319908]; go_process: premeiotic DNA synthesis [goid GO:0006279] [evidence IGI,IMP] [pmid 9732268]; go_process: regulation of cyclin dependent protein kinase activity [goid GO:0000079] [evidence TAS] --- --- --- --- --- --- S0006324 // CLB5 SGDID:S0006324, Chr XVI from 775180-773873, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017274 // cdna:Genscan chromosome:SGD1:XVI:773873:774709:-1 // ensembl // 11 // --- /// GENEFINDER00000020741 // cdna:GeneFinder chromosome:SGD1:XVI:773873:775180:-1 // ensembl // 11 // --- /// YPR120C // cdna:known chromosome:SGD1:XVI:773873:775180:-1 gene:YPR120C // ensembl // 11 // --- --- No cerevisiae_gene 1.92424224555438 -1.23551761055944 1.22537407919609 -1.748537449692 1.51911222320253 Max fold change below threshold 4 1.92424224555438 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777218_at YIL119C.S1 Putative transcriptional regulator; overexpression suppresses the heat shock sensitivity of wild-type RAS2 overexpression and also suppresses the cell lysis defect of an mpk1 mutation 1.92402405551491 183.402694702148 113.210563659668 RPI1 7265 // Ras protein signal transduction // inferred from mutant phenotype /// 9228 // thiamin biosynthesis // traceable author statement 5634 // nucleus // inferred from direct assay 5083 // small GTPase regulator activity // inferred from mutant phenotype 111.751190185547 191.042907714844 175.762481689453 114.669937133789 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL119C /GEN=RPI1 /DB_XREF=GI:6322072 /SEG=NC_001141:-136651,137874 /DEF=Putative transcriptional regulator; overexpression suppresses the heat shock sensitivity of wild-type RAS2 overexpression and also suppresses the cell lysis defect of an mpk1 mutation /NOTE=Rpi1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12455971]; go_function: small GTPase regulatory/interacting protein activity [goid GO:0005083] [evidence IMP] [pmid 1649384]; go_process: RAS protein signal transduction [goid GO:0007265] [evidence IMP] [pmid 1649384]; go_process: thiamin biosynthesis [goid GO:0009228] [evidence TAS] [pmid 9655908] --- --- --- --- --- --- S0001381 // RPI1 SGDID:S0001381, Chr IX from 137874-136651, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019115 // cdna:GeneFinder chromosome:SGD1:IX:136651:137544:-1 // ensembl // 11 // --- /// YIL119C // cdna:known chromosome:SGD1:IX:136651:137874:-1 gene:YIL119C // ensembl // 11 // --- --- No cerevisiae_gene 1.92402405551491 1.70953801384705 1.314567612169 1.57280187707732 1.02611826275314 Max fold change below threshold 4 1.92402405551491 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779553_at YDR257C.S1 Nuclear protein that contains a SET-domain, which have been shown to mediate methyltransferase activity in other proteins 1.92393761872148 283.077209472656 253.372573852539 SET7 --- 5634 // nucleus // inferred from direct assay --- 218.381622314453 272.354248046875 293.800170898438 288.363525390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR257C /GEN=SET7 /DB_XREF=GI:6320463 /SEG=NC_001136:-969982,971466 /DEF=Nuclear protein that contains a SET-domain, which have been shown to mediate methyltransferase activity in other proteins /NOTE=Set7p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002665 // SET7 SGDID:S0002665, Chr IV from 971468-969984, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025297 // cdna:Genscan chromosome:SGD1:IV:969984:971468:-1 // ensembl // 11 // --- /// YDR257C // cdna:known chromosome:SGD1:IV:969984:971468:-1 gene:YDR257C // ensembl // 11 // --- --- No cerevisiae_gene 1.92393761872148 1.24714820395787 1.32647109830184 1.34535208496339 1.32045692460057 Max fold change below threshold 4 1.92393761872148 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778278_at YOL067C.S1 Transcription factor (bHLH) involved in interorganelle communication between mitochondria, peroxisomes, and nucleus 1.92346973065867 37.3563556671143 43.431324005127 RTG1 6367 // transcription initiation from RNA polymerase II promoter // inferred from direct assay /// 8104 // protein localization // inferred from mutant phenotype /// 8104 // protein localization // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3713 // transcription coactivator activity // inferred from direct assay 42.140983581543 21.9088363647461 52.8038749694824 44.7216644287109 0.00195312988944352 0.00415039015933871 0.000244141003349796 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL067C /GEN=RTG1 /DB_XREF=GI:6324505 /SEG=NC_001147:-201984,202517 /DEF=Transcription factor (bHLH) involved in interorganelle communication between mitochondria, peroxisomes, and nucleus /NOTE=Rtg1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10848632]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10848632]; go_function: transcription coactivator activity [goid GO:0003713] [evidence IDA] [pmid 9032238]; go_process: protein localization [goid GO:0008104] [evidence IGI,IMP] [pmid 10848632]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence IDA] [pmid 10848632] --- --- --- --- --- --- S0005428 // RTG1 SGDID:S0005428, Chr XV from 202517-201984, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017413 // cdna:Genscan chromosome:SGD1:XV:201984:202517:-1 // ensembl // 11 // --- /// GENEFINDER00000022834 // cdna:GeneFinder chromosome:SGD1:XV:201984:202517:-1 // ensembl // 11 // --- /// YOL067C // cdna:known chromosome:SGD1:XV:201984:202517:-1 gene:YOL067C // ensembl // 11 // --- --- No cerevisiae_gene 1.22767046564472 -1.92346973065867 1.55019016012121 1.2530290107564 1.06123921721415 Max fold change below threshold 4 1.92346973065867 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769768_at SPAC1B2.02c.S1 --- 1.92320846655763 --- --- --- --- 7.98292016983032 10.8190202713013 6.64421224594116 12.0388956069946 0.0805663987994194 0.129638999700546 0.0805663987994194 0.03564453125 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B2.02c /DEF=mitochondrial carrier --- --- --- --- --- --- SPAC1B2.02c // |ugo1||mitochondrial fusion and transport protein Ugo1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.92320846655763 1.35527100874557 -1.41776557618766 -1.20148482232893 1.50808167323193 Max fold change below threshold 4 1.92320846655763 Max fold change below threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1771871_at YAL029C.S1 One of two type V myosins; required for mother-specific HO expression, for the bud tip localization of ASH1 and IST2 mRNA; facilitates growth and orientation of ER tubules along with She3p 1.92298684873797 871.572937011719 1623.26818847656 MYO4 8298 // intracellular mRNA localization // traceable author statement /// 48309 // endoplasmic reticulum inheritance // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 30478 // actin cap // inferred from direct assay 146 // microfilament motor activity // traceable author statement 1524.84887695313 950.187316894531 792.958557128906 1721.6875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL029C /GEN=MYO4 /DB_XREF=GI:6319290 /SEG=NC_001133:-87858,92273 /DEF=Required for mother-specific HO expression, for the bud tip localization of ASH1 and IST2 mRNA; facilitates growth and orientation of ER tubules along with She3p /NOTE=Myo4p; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IDA] [pmid 10652251]; go_function: microfilament motor activity [goid GO:0000146] [evidence TAS] [pmid 9153752]; go_process: endoplasmic reticulum inheritance [goid GO:0048309] [evidence IMP] [pmid 14691136]; go_process: mRNA localization, intracellular [goid GO:0008298] [evidence TAS] [pmid 10652251] --- --- --- --- --- --- S0000027 // MYO4 SGDID:S0000027, Chr I from 92271-87856, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018183 // cdna:GeneFinder chromosome:SGD1:I:87856:92271:-1 // ensembl // 11 // --- /// GENSCAN00000020353 // cdna:Genscan chromosome:SGD1:I:87856:91899:-1 // ensembl // 11 // --- /// YAL029C // cdna:known chromosome:SGD1:I:87856:92271:-1 gene:YAL029C // ensembl // 11 // --- --- No cerevisiae_gene -1.14011565296226 -1.60478765590846 -1.10107397260564 -1.92298684873797 1.12908729909038 Max fold change below threshold 4 1.92298684873797 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772075_at YJR055W.S1 Protein of unknown function, required for growth at high temperature 1.92280015398409 182.560424804688 365.555313110352 HIT1 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 347.614929199219 184.335067749023 180.785781860352 383.495697021484 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR055W /GEN=HIT1 /DB_XREF=GI:6322515 /SEG=NC_001142:+538686,539180 /DEF=Protein of unknown function, required for growth at high temperature /NOTE=Hit1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003816 // HIT1 SGDID:S0003816, Chr X from 538686-539180, Verified ORF // sgd // 11 // --- /// GENSCAN00000024176 // cdna:Genscan chromosome:SGD1:X:538686:539180:1 // ensembl // 11 // --- /// YJR055W // cdna:known chromosome:SGD1:X:538686:539180:1 gene:YJR055W // ensembl // 11 // --- --- No cerevisiae_gene 1.26819997742007 -1.88577753242538 1.21005612851106 -1.92280015398409 1.10321987005829 Max fold change below threshold 4 1.92280015398409 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777272_at YHR165C.S1 Component of the U4/U6-U5 snRNP complex, involved in the second catalytic step of splicing 1.92135746099779 550.551864624023 929.165679931641 PRP8 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 5682 // snRNP U5 // inferred from direct assay /// 5682 // snRNP U5 // inferred from physical interaction /// 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 31202 // RNA splicing factor activity, transesterification mechanism // inferred from physical interaction 916.592407226563 477.054595947266 624.049133300781 941.738952636719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR165C /GEN=PRP8 /DB_XREF=GI:6321959 /SEG=NC_001140:-429707,436948 /DEF=Component of the U4/U6-U5 snRNP complex, involved in the second catalytic step of splicing /NOTE=Prp8p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence IDA] [pmid 10377396]; go_component: snRNP U5 [goid GO:0005682] [evidence IDA,IPI] [pmid 11720285]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10377396] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 0.280000001192093 --- S0001208 // PRP8 SGDID:S0001208, Chr VIII from 436949-429708, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016691 // cdna:Genscan chromosome:SGD1:VIII:429708:436415:-1 // ensembl // 11 // --- /// GENEFINDER00000020168 // cdna:GeneFinder chromosome:SGD1:VIII:429708:436949:-1 // ensembl // 11 // --- /// YHR165C // cdna:known chromosome:SGD1:VIII:429708:436949:-1 gene:YHR165C // ensembl // 11 // --- --- No cerevisiae_gene -1.75315495980192 -1.92135746099779 1.00655710523424 -1.46878243765588 1.02743481749565 Max fold change below threshold 4 1.92135746099779 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-25srRnab_at AFFX-25srRnab Identified by fungal homology and RT-PCR 1.92134454297183 294.585586547852 255.697639465332 --- --- --- --- 336.340515136719 363.93359375 225.237579345703 175.054763793945 4.42872878920753E-5 4.42872878920753E-5 4.42245764133986E-5 4.42872878920753E-5 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /GEN=25S rRNA /DB_XREF=gb:J01355.1 /NOTE=SIF corresponding to nucleotides 858-1164 of gb:J01355.1 /DEF=S.cerevisiae 25S rRNA gene and flanks. --- --- --- --- --- --- L10643 // Saccharomyces cerevisiae 25S ribosomal RNA, partial. // gb // 0 // chr12:463694-463982(-) /// M19229 // Yeast (S.cerevisiae) 28S large subunit rRNA, 5' end. // gb // 0 // chr12:463950-464317(-) /// YLR154C-G // cdna:known chromosome:SGD1:XII:462523:462672:-1 gene:YLR154C-G // ensembl // 0 // chr12:462522-462672(-) /// D83562 // Saccharomyces cerevisiae 26S ribosomal rRNA, partial sequence. // gb // 0 // chr12:462482-462707(-) /// L11088 // Saccharomyces cerevisiae 25S ribosomal RNA sequence. // gb // 0 // chr12:463700-463969(-) /// D83572 // Saccharomyces cerevisiae 26S ribosomal RNA, partial sequence. // gb // 0 // chr12:463696-463826(-) /// L10682 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 25S ribosomal RNA, partial. // gb // 0 // chr12:462486-462734(-) /// L19652 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:462493-462760(-) /// D23716 // Saccharomyces cerevisiae 26S ribosomal RNA, partial sequence. // gb // 0 // chr12:463696-463826(-) /// D25212 // Yeast (strain IFO 2376) 26S rRNA, partial sequence. // gb // 0 // chr12:462482-462707(-) /// L21852 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:462492-462773(-) /// S0028561 // YLR154C-G SGDID:S0028561, Chr XII from 462672-462523, reverse complement, Uncharacterized ORF // sgd // 0 // chr12:462522-462672(-) /// L20827 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:463694-464013(-) /// L20827 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:454557-454876(-) /// L10643 // Saccharomyces cerevisiae 25S ribosomal RNA, partial. // gb // 0 // chr12:454557-454845(-) /// M19229 // Yeast (S.cerevisiae) 28S large subunit rRNA, 5' end. // gb // 0 // chr12:454813-455180(-) /// YLR154C-G // cdna:known chromosome:SGD1:XII:462523:462672:-1 gene:YLR154C-G // ensembl // 0 // chr12:453385-453535(-) /// D83562 // Saccharomyces cerevisiae 26S ribosomal rRNA, partial sequence. // gb // 0 // chr12:453345-453570(-) /// D83572 // Saccharomyces cerevisiae 26S ribosomal RNA, partial sequence. // gb // 0 // chr12:454559-454689(-) /// L11088 // Saccharomyces cerevisiae 25S ribosomal RNA sequence. // gb // 0 // chr12:454563-454832(-) /// L10682 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 25S ribosomal RNA, partial. // gb // 0 // chr12:453349-453597(-) /// L19652 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:453356-453623(-) /// D23716 // Saccharomyces cerevisiae 26S ribosomal RNA, partial sequence. // gb // 0 // chr12:454559-454689(-) /// D25212 // Yeast (strain IFO 2376) 26S rRNA, partial sequence. // gb // 0 // chr12:453345-453570(-) /// L21852 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:453355-453636(-) /// S0028561 // YLR154C-G SGDID:S0028561, Chr XII from 462672-462523, reverse complement, Uncharacterized ORF // sgd // 0 // chr12:453385-453535(-) S0028563 // sgd // 4 // Negative Strand Matching Probes /// GENSCAN00000017940 // ensembl // 10 // Negative Strand Matching Probes /// GENSCAN00000017941 // ensembl // 10 // Negative Strand Matching Probes /// YLR154W-B // ensembl // 4 // Negative Strand Matching Probes AFFX_control cerevisiae_gene -1.2366753276831 1.08203911622739 1.11565676206397 -1.4932699779218 -1.92134454297183 Max fold change below threshold 4 1.92134454297183 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779423_at YOR242C.S1 Sporulation specific protein that localizes to the spore wall; required for sporulation at a point after meiosis II and during spore wall formation; SSP2 expression is induced midway in meiosis 1.92109136070071 28.7356824874878 49.6992130279541 SSP2 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 5619 // spore wall (sensu Fungi) // inferred from direct assay --- 46.5957908630371 33.2165107727051 24.2548542022705 52.8026351928711 0.000244141003349796 0.00415039015933871 0.00292969006113708 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR242C /GEN=SSP2 /DB_XREF=GI:6324816 /SEG=NC_001147:-788742,789857 /DEF=Sporulation SPecific /NOTE=Ssp2p; go_component: spore wall (sensu Fungi) [goid GO:0005619] [evidence IDA] [pmid 12073037]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence IMP] [pmid 12073037] --- --- --- --- --- --- S0005768 // SSP2 SGDID:S0005768, Chr XV from 789857-788742, reverse complement, Verified ORF // sgd // 11 // --- /// YOR242C // cdna:known chromosome:SGD1:XV:788742:789857:-1 gene:YOR242C // ensembl // 11 // --- --- No cerevisiae_gene -1.07492036091494 -1.4027900516669 -1.87667521644138 -1.92109136070071 1.13320611615067 Max fold change below threshold 4 1.92109136070071 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773510_at YDR471W.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl27Ap and has similarity to rat L27 ribosomal protein 1.9208141449042 1336.78411865234 2509.86486816406 RPL27B 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 2557.86181640625 1331.65502929688 1341.91320800781 2461.86791992188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR471W /GEN=RPL27B /DB_XREF=GI:6320679 /SEG=NC_001136:+1401758,1402552 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl27Ap and has similarity to rat L27 ribosomal protein /NOTE=Rpl27bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0002879 // RPL27B SGDID:S0002879, Chr IV from 1401760-1401790,1402175-1402554, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023863 // cdna:GeneFinder chromosome:SGD1:IV:1401760:1402554:1 // ensembl // 11 // --- /// YDR471W // cdna:known chromosome:SGD1:IV:1401760:1402554:1 gene:YDR471W // ensembl // 11 // --- --- No cerevisiae_gene 1.39987727405225 -1.9208141449042 -1.64000073257631 -1.90613059111596 -1.03899230162089 Max fold change below threshold 4 1.9208141449042 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775002_at YKL183W.S1 Protein of unknown function; gene expression increases in cultures shifted to a lower temperature 1.92072709127112 189.68034362793 289.079406738281 LOT5 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 295.661346435547 153.931991577148 225.428695678711 282.497467041016 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL183W /GEN=LOT5 /DB_XREF=GI:6322665 /SEG=NC_001143:+98726,99646 /DEF=LOw Temperature responsive /NOTE=Lot5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001666 // LOT5 SGDID:S0001666, Chr XI from 98726-99646, Verified ORF // sgd // 11 // --- /// GENSCAN00000018282 // cdna:Genscan chromosome:SGD1:XI:99143:99646:1 // ensembl // 9 // --- /// GENEFINDER00000022973 // cdna:GeneFinder chromosome:SGD1:XI:99143:99646:1 // ensembl // 9 // --- /// YKL183W // cdna:known chromosome:SGD1:XI:98726:99646:1 gene:YKL183W // ensembl // 11 // --- --- No cerevisiae_gene 1.04877340352434 -1.92072709127112 1.01007376888516 -1.31155151097948 -1.04659822097669 Max fold change below threshold 4 1.92072709127112 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774540_at YGR248W.S1 6-phosphogluconolactonase with similarity to Sol3p 1.91967465784988 3155.10815429688 5298.20166015625 SOL4 9051 // pentose-phosphate shunt, oxidative branch // inferred from curator 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 17057 // 6-phosphogluconolactonase activity // inferred from sequence similarity /// 17057 // 6-phosphogluconolactonase activity // inferred from direct assay 5949.5732421875 3210.955078125 3099.26123046875 4646.830078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR248W /GEN=SOL4 /DB_XREF=GI:6321687 /SEG=NC_001139:+985976,986743 /DEF=Similar to SOL3 /NOTE=Sol4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: 6-phosphogluconolactonase activity [goid GO:0017057] [evidence ISS] [pmid 10518023]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- ec // 6PGL_HUMAN // (O95336) 6-phosphogluconolactonase (EC 3.1.1.31) (6PGL) // 2.0E-97 --- --- S0003480 // SOL4 SGDID:S0003480, Chr VII from 985977-986744, Verified ORF // sgd // 10 // --- /// GENSCAN00000019531 // cdna:Genscan chromosome:SGD1:VII:985977:986744:1 // ensembl // 10 // --- /// GENEFINDER00000021594 // cdna:GeneFinder chromosome:SGD1:VII:985977:986744:1 // ensembl // 10 // --- /// YGR248W // cdna:known chromosome:SGD1:VII:985977:986744:1 gene:YGR248W // ensembl // 10 // --- --- No cerevisiae_gene -1.66161445873004 -1.85289831138394 -1.19608582052302 -1.91967465784988 -1.2803509364793 Max fold change below threshold 4 1.91967465784988 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778813_at YEL018W.S1 Esa1p-associated factor, subunit of the NuA4 acetyltransferase complex 1.91943445778692 261.32056427002 528.638549804688 EAF5 --- 5634 // nucleus // inferred from direct assay /// 43189 // H4/H2A histone acetyltransferase complex // inferred from physical interaction --- 479.771423339844 249.954574584961 272.686553955078 577.505676269531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL018W /GEN=EAF5 /DB_XREF=GI:6320818 /SEG=NC_001137:+121471,122310 /DEF=Esa1p-associated factor, subunit of the NuA4 acetyltransferase complex /NOTE=Eaf5p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000744 // EAF5 SGDID:S0000744, Chr V from 121471-122310, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016789 // cdna:Genscan chromosome:SGD1:V:121570:122310:1 // ensembl // 11 // --- /// GENEFINDER00000019613 // cdna:GeneFinder chromosome:SGD1:V:121789:122310:1 // ensembl // 10 // --- /// YEL018W // cdna:known chromosome:SGD1:V:121471:122310:1 gene:YEL018W // ensembl // 11 // --- YEL018C-A // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene -1.14042923428825 -1.91943445778692 -1.06743821685675 -1.7594245714766 1.20371003393518 Max fold change below threshold 4 1.91943445778692 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776992_at YGL032C.S1 Adhesion subunit of a-agglutinin of a-cells, C-terminal sequence acts as a ligand for alpha-agglutinin (Sag1p) during agglutination, modified with O-linked oligomannosyl chains, linked to anchorage subunit Aga1p via two disulfide bonds 1.91914594258474 10.7761554718018 6.59737133979797 AGA2 752 // agglutination during conjugation with cellular fusion // traceable author statement 9277 // cell wall (sensu Fungi) // traceable author statement 50839 // cell adhesion molecule binding // traceable author statement 6.35247325897217 9.36098766326904 12.1913232803345 6.84226942062378 0.274170011281967 0.303710997104645 0.0805663987994194 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL032C /GEN=AGA2 /DB_XREF=GI:6321406 /SEG=NC_001139:-436573,436836 /DEF=Adhesion subunit of a-agglutinin of a-cells, C-terminal sequence acts as a ligand for alpha-agglutinin (Sag1p) during agglutination, modified with O-linked oligomannosyl chains, linked to anchorage subunit Aga1p via two disulfide bonds /NOTE=Aga2p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence TAS] [pmid 7957044]; go_function: cell adhesion molecule binding [goid GO:0050839] [evidence TAS] [pmid 11292808]; go_process: agglutination during conjugation with cellular fusion [goid GO:0000752] [evidence TAS] [pmid 7957044] --- --- --- --- --- --- S0003000 // AGA2 SGDID:S0003000, Chr VII from 436838-436575, reverse complement, Verified ORF // sgd // 11 // --- /// X62877 // S.cerevisiae AGA2 mRNA for a-agglutinin. // gb // 11 // --- /// YGL032C // cdna:known chromosome:SGD1:VII:436575:436838:-1 gene:YGL032C // ensembl // 11 // --- --- No cerevisiae_gene 1.56642743014578 1.4735973347149 1.21596974711648 1.91914594258474 1.07710322289981 Max fold change below threshold 4 1.91914594258474 Max fold change below threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772337_at SPCC126.09.S1 --- 1.91894557087863 --- --- --- --- 0.849532663822174 0.482456356287003 1.47680628299713 0.997139275074005 0.850341975688934 0.985840022563934 0.870360970497131 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC126.09 /DEF=localization vacuolar membrane (predicted) --- --- --- --- --- --- SPCC126.09 // |||vacuolar membrane zinc transporter |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.35229653230003 -1.76084873326201 1.91894557087863 1.73837492763699 1.1737503659809 Max fold change below threshold 0 1.91894557087863 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773279_at YKL212W.S1 Lipid phosphoinositide phosphatase of the ER and Golgi, involved in protein trafficking and secretion 1.91887769649542 658.68994140625 416.876068115234 SAC1 6887 // exocytosis // inferred from mutant phenotype /// 17157 // regulation of exocytosis // inferred from mutant phenotype /// 17157 // regulation of exocytosis // inferred from physical interaction /// 46856 // phosphoinositide dephosphorylation // inferred from direct assay /// 46856 // phosphoinositide dephosphorylation // inferred from mutant phenotype /// 48017 // inositol lipid-mediated signaling // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 30173 // integral to Golgi membrane // inferred from direct assay /// 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay 4437 // inositol or phosphatidylinositol phosphatase activity // inferred from direct assay 386.164306640625 576.377807617188 741.002075195313 447.587829589844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL212W /GEN=SAC1 /DB_XREF=GI:6322637 /SEG=NC_001143:+34544,36415 /DEF=Inactivation of Sac1p leads to specific increase in cellular levels of phosphatidylinositol 4-phosphate, accompanied by changes in vacuole morphology and accumulation of lipid droplets. /NOTE=Sac1p; go_component: integral to Golgi membrane [goid GO:0030173] [evidence IDA] [pmid 8314848]; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA] [pmid 8314848]; go_function: inositol/phosphatidylinositol phosphatase activity [goid GO:0004437] [evidence IDA] [pmid 10625610]; go_process: dephosphorylation [goid GO:0016311] [evidence IDA] [pmid 10625610]; go_process: phosphoinositide metabolism [goid GO:0030384] [evidence IMP] [pmid 10625610] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.39999961853027 S0001695 // span:522-544,556-573 // numtm:2 S0001695 // SAC1 SGDID:S0001695, Chr XI from 34544-36415, Verified ORF // sgd // 11 // --- /// GENSCAN00000018260 // cdna:Genscan chromosome:SGD1:XI:34544:36415:1 // ensembl // 11 // --- /// GENEFINDER00000023026 // cdna:GeneFinder chromosome:SGD1:XI:34544:36415:1 // ensembl // 11 // --- /// YKL212W // cdna:known chromosome:SGD1:XI:34544:36415:1 gene:YKL212W // ensembl // 11 // --- --- No cerevisiae_gene 1.52781560558098 1.49257142026226 1.16405718046517 1.91887769649542 1.15906059128966 Max fold change below threshold 4 1.91887769649542 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770716_at YBR197C.S1 Hypothetical protein 1.91873976689289 65.50537109375 101.865047454834 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 100.065956115723 52.1519165039063 78.8588256835938 103.664138793945 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR197C /GEN=PGI1 /DB_XREF=GI:6319674 /SEG=NC_001134:-615160,615813 /DEF=Hypothetical ORF /NOTE=Ybr197cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000401 // YBR197C SGDID:S0000401, Chr II from 615851-615198, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021297 // cdna:Genscan chromosome:SGD1:II:615198:615851:-1 // ensembl // 11 // --- /// GENEFINDER00000022263 // cdna:GeneFinder chromosome:SGD1:II:615198:615851:-1 // ensembl // 11 // --- /// YBR197C // cdna:known chromosome:SGD1:II:615198:615851:-1 gene:YBR197C // ensembl // 11 // --- --- No cerevisiae_gene 1.02948159268427 -1.91873976689289 1.12286330007712 -1.26892526294037 1.03595811020945 Max fold change below threshold 4 1.91873976689289 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778197_at YGL183C.S1 Protein required for recombination and meiotic nuclear division; forms a complex with Hop2p, which is involved in chromosome pairing and repair of meiotic double-strand breaks 1.91805033083092 27.353611946106 19.3330860137939 MND1 7131 // meiotic recombination // inferred from mutant phenotype 794 // condensed nuclear chromosome // inferred from direct assay 3690 // double-stranded DNA binding // inferred from direct assay /// 3690 // double-stranded DNA binding // inferred from physical interaction /// 5515 // protein binding // inferred from physical interaction 23.1345596313477 33.5691223144531 21.1381015777588 15.5316123962402 0.0561522990465164 0.000244141003349796 0.00292969006113708 0.00122069998178631 M P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL183C /GEN=MND1 /DB_XREF=GI:27808704 /SEG=NC_001139:-156547,157289 /DEF=needed for Meiotic Nuclear Divisions /NOTE=Mnd1p; go_component: condensed nuclear chromosome [goid GO:0000794] [evidence IDA] [pmid 11940665]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiotic recombination [goid GO:0007131] [evidence IMP] [pmid 11470404] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 4.69999980926514 --- S0003151 // MND1 SGDID:S0003151, Chr VII from 157291-157289,157205-156549, reverse complement, intron sequence removed, Verified ORF // sgd // 10 // --- /// YGL183C // cdna:known chromosome:SGD1:VII:156549:157291:-1 gene:YGL183C // ensembl // 10 // --- --- No cerevisiae_gene 1.0231369461988 1.45103787793594 -1.91805033083092 -1.09444831392472 -1.4895143556987 Max fold change below threshold 4 1.91805033083092 Max fold change below threshold MPPPPP No 1 0 MPPP 0 3 1 No No 2 < x = 3
1774860_at YPR183W.S1 Dolichol phosphate mannose (Dol-P-Man) synthase of the ER membrane, catalyzes the formation of Dol-P-Man from Dol-P and GDP-Man; required for glycosyl phosphatidylinositol membrane anchoring, O mannosylation, and protein glycosylation 1.91783195266379 1325.83331298828 1113.58758544922 DPM1 6487 // N-linked glycosylation // inferred from mutant phenotype /// 6493 // O-linked glycosylation // inferred from mutant phenotype /// 6506 // GPI anchor biosynthesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 42175 // nuclear envelope-endoplasmic reticulum network // inferred from direct assay 4582 // dolichyl-phosphate beta-D-mannosyltransferase activity // inferred from direct assay /// 16757 // transferase activity, transferring glycosyl groups // inferred from sequence similarity 1082.08239746094 1101.79833984375 1549.86828613281 1145.0927734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR183W /GEN=DPM1 /DB_XREF=GI:6325441 /SEG=NC_001148:+900749,901552 /DEF=Dolichol phosphate mannose (Dol-P-Man) synthase of the ER membrane, catalyzes the formation of Dol-P-Man from Dol-P and GDP-Man; required for glycosyl phosphatidylinositol membrane anchoring, O mannosylation, and protein glycosylation /NOTE=Dpm1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 1803815]; go_component: nuclear envelope-endoplasmic reticulum network [goid GO:0042175] [evidence IDA] [pmid 10419517]; go_function: dolichyl-phosphate beta-D-mannosyltransferase activity [goid GO:0004582] [evidence IDA] [pmid 3053713]; go_function: transferase activity, transferring glycosyl groups [goid GO:0016757] [evidence ISS] [pmid 9653120]; go_process: GPI anchor biosynthesis [goid GO:0006506] [evidence IMP] [pmid 1333231]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IMP] [pmid 1333231]; go_process: O-linked glycosylation [goid GO:0006493] [evidence IMP] [pmid 1333231] --- --- --- --- --- S0006387 // span:244-266 // numtm:1 S0006387 // DPM1 SGDID:S0006387, Chr XVI from 900751-901554, Verified ORF // sgd // 10 // --- /// GENSCAN00000017326 // cdna:Genscan chromosome:SGD1:XVI:900751:901554:1 // ensembl // 10 // --- /// GENEFINDER00000021025 // cdna:GeneFinder chromosome:SGD1:XVI:900751:901554:1 // ensembl // 10 // --- /// YPR183W // cdna:known chromosome:SGD1:XVI:900751:901554:1 gene:YPR183W // ensembl // 10 // --- --- No cerevisiae_gene 1.91783195266379 1.01822037067517 -1.08802790149051 1.43230154170285 1.05823066350993 Max fold change below threshold 4 1.91783195266379 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773159_s_at YDR261W-B.S1 TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// Identified by expression profiling and mass spectrometry /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// Ty ORF /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition 1.91726920514697 175.749702453613 261.132095336914 --- 6319 // Ty element transposition // inferred from sequence similarity 943 // retrotransposon nucleocapsid // inferred from sequence similarity 3723 // RNA binding // inferred from sequence similarity /// 3887 // DNA-directed DNA polymerase activity // inferred from sequence similarity /// 3964 // RNA-directed DNA polymerase activity // inferred from sequence similarity /// 4540 // ribonuclease activity // inferred from sequence similarity /// 5515 // protein binding // inferred from sequence similarity /// 8233 // peptidase activity // inferred from sequence similarity 179.025024414063 178.114471435547 173.38493347168 343.239166259766 0.000244141003349796 0.00122069998178631 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR261W-B /GEN=EXG2 /DB_XREF=GI:7839158 /SEG=NC_001136:+981454,986767 /DEF=TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /NOTE=Ydr261w-bp; go_component: retrotransposon nucleocapsid [goid GO:0000943] [evidence ISS] [pmid 9582191]; go_function: DNA-directed DNA polymerase activity [goid GO:0003887] [evidence ISS] [pmid 9582191]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 9582191]; go_function: RNA-directed DNA polymerase activity [goid GO:0003964] [evidence ISS] [pmid 9582191]; go_function: peptidase activity [goid GO:0008233] [evidence ISS] [pmid 9582191]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 9582191]; go_function: ribonuclease activity [goid GO:0004540] [evidence ISS] [pmid 9582191]; go_process: Ty element transposition [goid GO:0006319] [evidence ISS] [pmid 9582191] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.60000002384186 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.70000004768372 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.79999995231628 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.5 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.59999990463257 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.70000004768372 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.79999995231628 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.90000009536743 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 4.59999990463257 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.69999980926514 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.80000019073486 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.90000009536743 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 6.30000019073486 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 7.90000009536743 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 9.19999980926514 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 9.5 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 7.59999990463257 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 7.80000019073486 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.39999961853027 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.5 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.69999980926514 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.89999961853027 --- S0002147 // YBL005W-B SGDID:S0002147, Chr II from 221333-222637,222639-226601, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0002155 // YBR012W-B SGDID:S0002155, Chr II from 259867-261171,261173-265138, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007397 // YDR261W-B SGDID:S0007397, Chr IV from 981456-982748,982750-986769, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0000962 // YER160C SGDID:S0000962, Chr V from 498119-496818,496816-492851, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007406 // YGR027W-B SGDID:S0007406, Chr VII from 536061-537365,537367-541329, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007368 // YGR161C-D SGDID:S0007368, Chr VII from 823020-821716,821714-817752, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0003790 // YJR029W SGDID:S0003790, Chr X from 478258-479558,479560-483526, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007225 // YLR035C-A SGDID:S0007225, Chr XII from 218908-215441, reverse complement, Ty ORF // sgd // 11 // --- /// S0004648 // YMR045C SGDID:S0004648, Chr XIII from 362626-361322,361320-357358, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0004653 // YMR050C SGDID:S0004653, Chr XIII from 378324-377020,377018-373056, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007387 // YNL284C-B SGDID:S0007387, Chr XIV from 102230-100926,100924-96962, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007352 // YOR142W-B SGDID:S0007352, Chr XV from 595112-596416,596418-600380, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// GENSCAN00000021135 // cdna:Genscan chromosome:SGD1:II:223134:226601:1 // ensembl // 11 // --- /// GENEFINDER00000022184 // cdna:GeneFinder chromosome:SGD1:II:223134:226601:1 // ensembl // 11 // --- /// GENSCAN00000021149 // cdna:Genscan chromosome:SGD1:II:261668:265138:1 // ensembl // 11 // --- /// GENEFINDER00000022155 // cdna:GeneFinder chromosome:SGD1:II:261668:265138:1 // ensembl // 11 // --- /// GENSCAN00000025303 // cdna:Genscan chromosome:SGD1:IV:983245:986769:1 // ensembl // 11 // --- /// GENEFINDER00000023837 // cdna:GeneFinder chromosome:SGD1:IV:983647:986769:1 // ensembl // 11 // --- /// GENSCAN00000016938 // cdna:Genscan chromosome:SGD1:V:492851:496318:-1 // ensembl // 11 // --- /// GENEFINDER00000019765 // cdna:GeneFinder chromosome:SGD1:V:492851:496318:-1 // ensembl // 11 // --- /// GENSCAN00000019361 // cdna:Genscan chromosome:SGD1:VII:537862:541329:1 // ensembl // 11 // --- /// GENEFINDER00000021411 // cdna:GeneFinder chromosome:SGD1:VII:537862:541329:1 // ensembl // 11 // --- /// GENSCAN00000019466 // cdna:Genscan chromosome:SGD1:VII:817752:821219:-1 // ensembl // 11 // --- /// GENEFINDER00000021746 // cdna:GeneFinder chromosome:SGD1:VII:817752:820817:-1 // ensembl // 11 // --- /// GENSCAN00000024155 // cdna:Genscan chromosome:SGD1:X:480059:483526:1 // ensembl // 11 // --- /// GENEFINDER00000024293 // cdna:GeneFinder chromosome:SGD1:X:480059:483526:1 // ensembl // 11 // --- /// GENSCAN00000017848 // cdna:Genscan chromosome:SGD1:XII:215441:218908:-1 // ensembl // 11 // --- /// GENEFINDER00000024644 // cdna:GeneFinder chromosome:SGD1:XII:215441:218908:-1 // ensembl // 11 // --- /// GENSCAN00000018752 // cdna:Genscan chromosome:SGD1:XIII:357358:360825:-1 // ensembl // 11 // --- /// GENEFINDER00000021925 // cdna:GeneFinder chromosome:SGD1:XIII:357358:360423:-1 // ensembl // 11 // --- /// GENSCAN00000018757 // cdna:Genscan chromosome:SGD1:XIII:373056:376523:-1 // ensembl // 11 // --- /// GENEFINDER00000021935 // cdna:GeneFinder chromosome:SGD1:XIII:373056:376523:-1 // ensembl // 11 // --- /// GENSCAN00000019813 // cdna:Genscan chromosome:SGD1:XIV:96962:100429:-1 // ensembl // 11 // --- /// GENEFINDER00000020607 // cdna:GeneFinder chromosome:SGD1:XIV:96962:100429:-1 // ensembl // 11 // --- /// GENSCAN00000017569 // cdna:Genscan chromosome:SGD1:XV:596913:600380:1 // ensembl // 11 // --- /// GENEFINDER00000022561 // cdna:GeneFinder chromosome:SGD1:XV:597315:600380:1 // ensembl // 11 // --- /// YBL005W-B // cdna:known chromosome:SGD1:II:221333:226601:1 gene:YBL005W-B // ensembl // 11 // --- /// YBR012W-B // cdna:known chromosome:SGD1:II:259867:265138:1 gene:YBR012W-B // ensembl // 11 // --- /// YDR261W-B // cdna:known chromosome:SGD1:IV:981456:986769:1 gene:YDR261W-B // ensembl // 11 // --- /// YER160C // cdna:known chromosome:SGD1:V:492851:498119:-1 gene:YER160C // ensembl // 11 // --- /// YGR027W-B // cdna:known chromosome:SGD1:VII:536061:541329:1 gene:YGR027W-B // ensembl // 11 // --- /// YGR161C-D // cdna:known chromosome:SGD1:VII:817752:823020:-1 gene:YGR161C-D // ensembl // 11 // --- /// YJR029W // cdna:known chromosome:SGD1:X:478258:483526:1 gene:YJR029W // ensembl // 11 // --- /// YLR035C-A // cdna:known chromosome:SGD1:XII:215441:218908:-1 gene:YLR035C-A // ensembl // 11 // --- /// YMR045C // cdna:known chromosome:SGD1:XIII:357358:362626:-1 gene:YMR045C // ensembl // 11 // --- /// YMR050C // cdna:known chromosome:SGD1:XIII:373056:378324:-1 gene:YMR050C // ensembl // 11 // --- /// YNL284C-B // cdna:known chromosome:SGD1:XIV:96962:102230:-1 gene:YNL284C-B // ensembl // 11 // --- /// YOR142W-B // cdna:known chromosome:SGD1:XV:595112:600380:1 gene:YOR142W-B // ensembl // 11 // --- --- No cerevisiae_gene 1.63381161387807 -1.00511217853988 1.54402542526011 -1.03252930245698 1.91726920514697 Max fold change below threshold 4 1.91726920514697 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778504_at YPR036W.S1 Subunit H of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; serves as an activator or a structural stabilizer of the V-ATPase 1.91708534298524 4899.33154296875 2939.35900878906 VMA13 7035 // vacuolar acidification // traceable author statement 221 // hydrogen-transporting ATPase V1 domain // traceable author statement /// 329 // vacuolar membrane (sensu Fungi) // traceable author statement 46961 // hydrogen-transporting ATPase activity, rotational mechanism // traceable author statement 2915.8193359375 5589.87451171875 4208.78857421875 2962.89868164063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR036W /GEN=VMA13 /DB_XREF=GI:6325293 /SEG=NC_001148:+643831,645267 /DEF=vacuolar ATPase V1 domain subunit H (54 kDa) /NOTE=Vma13p; go_component: hydrogen-transporting ATPase V1 domain [goid GO:0000221] [evidence TAS] [pmid 9442887]; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence TAS] [pmid 11717306]; go_function: hydrogen-transporting ATPase activity, rotational mechanism [goid GO:0046961] [evidence TAS] [pmid 9442887]; go_process: vacuolar acidification [goid GO:0007035] [evidence TAS] [pmid 9442887] --- --- --- --- --- --- S0006240 // VMA13 SGDID:S0006240, Chr XVI from 643833-645269, Verified ORF // sgd // 11 // --- /// GENSCAN00000017215 // cdna:Genscan chromosome:SGD1:XVI:643833:645269:1 // ensembl // 11 // --- /// GENEFINDER00000020948 // cdna:GeneFinder chromosome:SGD1:XVI:643833:645269:1 // ensembl // 11 // --- /// YPR036W // cdna:known chromosome:SGD1:XVI:643833:645269:1 gene:YPR036W // ensembl // 11 // --- --- No cerevisiae_gene 1.29109519763387 1.91708534298524 -1.03660114971181 1.44343256193736 1.01614618063708 Max fold change below threshold 4 1.91708534298524 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778174_at YBR204C.S1 Hypothetical protein 1.91702138488404 514.132705688477 539.520599365234 --- --- 5811 // lipid particle // inferred from direct assay 17171 // serine hydrolase activity // inferred from direct assay 500.019470214844 371.561859130859 656.703552246094 579.021728515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR204C /GEN=COS111 /DB_XREF=GI:6319681 /SEG=NC_001134:-632211,633338 /DEF=Hypothetical ORF /NOTE=Ybr204cp; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 10077615]; go_function: serine hydrolase activity [goid GO:0017171] [evidence IDA] [pmid 14645503]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000408 // YBR204C SGDID:S0000408, Chr II from 633376-632249, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021304 // cdna:Genscan chromosome:SGD1:II:632249:633370:-1 // ensembl // 11 // --- /// YBR204C // cdna:known chromosome:SGD1:II:632249:633376:-1 gene:YBR204C // ensembl // 11 // --- --- No cerevisiae_gene -1.91702138488404 -1.34572335111162 1.5745364651938 1.3133559618467 1.15799836407738 Max fold change below threshold 4 1.91702138488404 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780184_at YNR021W.S1 Hypothetical protein 1.91678570894548 1137.06652832031 2031.61419677734 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 1987.32702636719 1036.80187988281 1237.33117675781 2075.9013671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR021W /GEN=ARE2 /DB_XREF=GI:6324348 /SEG=NC_001146:+668376,669590 /DEF=Hypothetical ORF /NOTE=Ynr021wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.7.Valyl-tRNA synthetase (ValRS) C-terminal domain // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Valyl-tRNA synthetase (ValRS) C-terminal domain // 1.29999995231628 S0005304 // span:40-62 // numtm:1 S0005304 // YNR021W SGDID:S0005304, Chr XIV from 668377-669591, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020495 // cdna:GeneFinder chromosome:SGD1:XIV:668377:669591:1 // ensembl // 11 // --- /// YNR021W // cdna:known chromosome:SGD1:XIV:668377:669591:1 gene:YNR021W // ensembl // 11 // --- --- No cerevisiae_gene 1.6065183051075 -1.91678570894548 -1.1466961470386 -1.6061399435312 1.04456958499791 Max fold change below threshold 4 1.91678570894548 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779464_at YHL023C.S1 Protein required for sporulation 1.91622420468351 381.252014160156 536.416137695313 RMD11 --- --- --- 529.678100585938 409.087860107422 353.416168212891 543.154174804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL023C /GEN=RMD11 /DB_XREF=GI:6321764 /SEG=NC_001140:-59120,62560 /DEF=Protein required for sporulation /NOTE=Rmd11p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001015 // RMD11 SGDID:S0001015, Chr VIII from 62560-59120, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000016534 // cdna:Genscan chromosome:SGD1:VIII:59120:62560:-1 // ensembl // 10 // --- /// GENEFINDER00000020318 // cdna:GeneFinder chromosome:SGD1:VIII:59120:60586:-1 // ensembl // 10 // --- /// YHL023C // cdna:known chromosome:SGD1:VIII:59120:62560:-1 gene:YHL023C // ensembl // 10 // --- --- No cerevisiae_gene -1.91622420468351 -1.29477834039575 -1.07762110274468 -1.49873760236931 1.02544200752087 Max fold change below threshold 4 1.91622420468351 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772399_at YOL110W.S1 Subunit of a palmitoyltransferase, composed of Shr5p and Erf2p, that adds a palmitoyl lipid moiety to Ras2p through a thioester linkage; palmitoylation is required for Ras2p localization to the plasma membrane 1.91617150410236 982.434875488281 659.434906005859 SHR5 7265 // Ras protein signal transduction // inferred from mutant phenotype /// 8104 // protein localization // inferred from mutant phenotype /// 18318 // protein amino acid palmitoylation // inferred from direct assay 31211 // palmitoyltransferase complex // inferred from physical interaction /// 42406 // extrinsic to endoplasmic reticulum membrane // inferred from direct assay 19706 // protein-cysteine S-palmitoleyltransferase activity // inferred from mutant phenotype 619.313720703125 778.158447265625 1186.71130371094 699.556091308594 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL110W /GEN=SHR5 /DB_XREF=GI:6324462 /SEG=NC_001147:+109175,109888 /DEF=Subunit of a palmitoyltransferase, composed of Shr5p and Erf2p, that adds a palmitoyl lipid moiety to Ras2p through a thioester linkage; palmitoylation is required for Ras2p localization to the plasma membrane /NOTE=Shr5p; go_component: extrinsic to endoplasmic reticulum membrane [goid GO:0042406] [evidence IDA] [pmid 12379641]; go_function: palmitoyltransferase activity [goid GO:0016409] [evidence IDA] [pmid 12193598]; go_process: RAS protein signal transduction [goid GO:0007265] [evidence IMP] [pmid 7532279]; go_process: protein amino acid palmitoylation [goid GO:0018318] [evidence IDA] [pmid 12193598]; go_process: protein localization [goid GO:0008104] [evidence IMP] [pmid 7532279] --- --- --- --- --- --- S0005470 // SHR5 SGDID:S0005470, Chr XV from 109175-109888, Verified ORF // sgd // 11 // --- /// GENSCAN00000017378 // cdna:Genscan chromosome:SGD1:XV:109175:109888:1 // ensembl // 11 // --- /// GENEFINDER00000022686 // cdna:GeneFinder chromosome:SGD1:XV:109175:109888:1 // ensembl // 11 // --- /// YOL110W // cdna:known chromosome:SGD1:XV:109175:109888:1 gene:YOL110W // ensembl // 11 // --- --- No cerevisiae_gene 1.3726664154225 1.25648507574184 1.17627721587301 1.91617150410236 1.12956659593197 Max fold change below threshold 4 1.91617150410236 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769414_at SPAC31F12.01.S1 --- 1.91566333572082 --- --- --- --- 7.30898284912109 10.4192590713501 3.81537961959839 6.93911838531494 0.398925989866257 0.030273400247097 0.194580003619194 0.0676269978284836 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC31F12.01 /DEF=zds family --- --- --- --- --- --- SPAC31F12.01 // ||SPAC637.14|zds family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.62670901813539 1.42554159538123 -1.71291814270548 -1.91566333572082 -1.05330136240201 Max fold change below threshold 4 1.91566333572082 Max fold change below threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1775600_at YLR453C.S1 Protein that binds to the Rap1p C-terminus and acts synergistically with Rif1p to help control telomere length and establish telomeric silencing; deletion results in telomere elongation 1.91484375793968 17.4243521690369 25.0572004318237 RIF2 7004 // telomerase-dependent telomere maintenance // inferred from mutant phenotype 783 // nuclear telomere cap complex // inferred from direct assay 42162 // telomeric DNA binding // inferred from direct assay 21.2078037261963 14.1594800949097 20.6892242431641 28.9065971374512 0.000244141003349796 0.0239257998764515 0.0107421996071935 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR453C /GEN=RIF2 /DB_XREF=GI:6323486 /SEG=NC_001144:-1041796,1042983 /DEF=interacts with the c-terminus of Rap1p and with Rif1p; has functional similarities with Rif1p; Rif2p and Rif1p have synergistic effects on telomere length and chromosome loss /NOTE=Rif2p; go_component: nuclear telomere cap complex [goid GO:0000783] [evidence IDA] [pmid 9710643]; go_function: telomeric DNA binding [goid GO:0042162] [evidence IDA] [pmid 9710643]; go_process: telomerase-dependent telomere maintenance [goid GO:0007004] [evidence IMP] [pmid 9087429] --- --- --- --- --- --- S0004445 // RIF2 SGDID:S0004445, Chr XII from 1042983-1041796, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018165 // cdna:Genscan chromosome:SGD1:XII:1041796:1042983:-1 // ensembl // 11 // --- /// YLR453C // cdna:known chromosome:SGD1:XII:1041796:1042983:-1 gene:YLR453C // ensembl // 11 // --- --- No cerevisiae_gene 1.57039668236263 -1.49778124507696 1.91484375793968 -1.02506519707734 1.36301700594037 Max fold change below threshold 4 1.91484375793968 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1771075_at YKR085C.S1 Mitochondrial ribosomal protein of the large subunit 1.9147791314298 158.264991760254 284.485290527344 MRPL20 2 // mitochondrial genome maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement /// 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // traceable author statement 269.430541992188 140.711029052734 175.818954467773 299.5400390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR085C /GEN=MRPL20 /DB_XREF=GI:6322938 /SEG=NC_001143:-598736,599323 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl20p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: mitochondrial genome maintenance [goid GO:0000002] [evidence IMP] [pmid 2183197]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0001793 // MRPL20 SGDID:S0001793, Chr XI from 599323-598736, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018487 // cdna:Genscan chromosome:SGD1:XI:598736:599323:-1 // ensembl // 11 // --- /// GENEFINDER00000023101 // cdna:GeneFinder chromosome:SGD1:XI:598736:599323:-1 // ensembl // 11 // --- /// YKR085C // cdna:known chromosome:SGD1:XI:598736:599323:-1 gene:YKR085C // ensembl // 11 // --- --- No cerevisiae_gene -1.18611365568983 -1.9147791314298 1.21557273437765 -1.53243171538466 1.11175235312107 Max fold change below threshold 4 1.9147791314298 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779300_at SPBC16H5.09c.S1 --- 1.91470034072154 --- --- --- --- 5.85963344573975 3.68195843696594 7.37257099151611 5.3847918510437 0.0676269978284836 0.24609400331974 0.014160200022161 0.00195312988944352 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16H5.09c /DEF=glycosyl transferase family 15 --- --- --- --- --- --- SPBC16H5.09c // |||glycosyl transferase family 15|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.91470034072154 -1.59144475584257 -1.16144662533732 1.25819661925719 -1.08818197765695 Max fold change below threshold 4 1.91470034072154 Max fold change below threshold AAAPPP No 3 0 AAPP 2 2 0 No No 1 < x = 2
1769979_at YCL032W.S1 Protein involved in mating response, invasive/filamentous growth, and osmotolerance, acts as an adaptor that links G protein-associated Cdc42p-Ste20p complex to the effector Ste11p to modulate signal transduction 1.91466332455609 199.226867675781 330.167999267578 STE50 161 // MAPKKK cascade during osmolarity sensing // inferred from mutant phenotype /// 161 // MAPKKK cascade during osmolarity sensing // inferred from physical interaction /// 750 // signal transduction during conjugation with cellular fusion // inferred from mutant phenotype /// 750 // signal transduction during conjugation with cellular fusion // inferred from physical interaction /// 1402 // signal transduction during filamentous growth // inferred from mutant phenotype /// 1402 // signal transduction during filamentous growth // inferred from physical interaction /// 19236 // response to pheromone // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 19887 // protein kinase regulator activity // inferred from direct assay /// 19887 // protein kinase regulator activity // inferred from physical interaction 314.791381835938 164.410827636719 234.042907714844 345.544616699219 0.000244141003349796 0.00585938012227416 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL032W /GEN=STE50 /DB_XREF=GI:6319817 /SEG=NC_001135:+63441,64481 /DEF=involved in pheromone signal transduction pathway; interacts with G protein and Ste11p /NOTE=Ste50p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9742096]; go_function: protein kinase regulator activity [goid GO:0019887] [evidence IDA,IPI] [pmid 10397774]; go_process: MAPKKK cascade during osmolarity sensing [goid GO:0000161] [evidence IMP,IPI] [pmid 9742096]; go_process: response to pheromone [goid GO:0019236] [evidence IDA] [pmid 10417390]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence IMP,IPI] [pmid 8793874]; go_process: signal transduction during filamentous growth [goid GO:0001402] [evidence IMP,IPI] [pmid 9738877] --- --- --- --- --- --- S0000537 // STE50 SGDID:S0000537, Chr III from 63441-64481, Verified ORF // sgd // 11 // --- /// GENSCAN00000022440 // cdna:Genscan chromosome:SGD1:III:63441:64481:1 // ensembl // 11 // --- /// GENEFINDER00000023311 // cdna:GeneFinder chromosome:SGD1:III:63441:64481:1 // ensembl // 11 // --- /// YCL032W // cdna:known chromosome:SGD1:III:63441:64481:1 gene:YCL032W // ensembl // 11 // --- --- No cerevisiae_gene -1.45607773401424 -1.91466332455609 1.43606809212606 -1.3450156849849 1.09769401780926 Max fold change below threshold 4 1.91466332455609 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1775615_at YLR389C.S1 Metalloprotease involved, with homolog Axl1p, in N-terminal processing of pro-a-factor to the mature form; member of the insulin-degrading enzyme family 1.91460003936915 852.381011962891 1562.81494140625 STE23 6508 // proteolysis and peptidolysis // traceable author statement /// 7323 // peptide pheromone maturation // traceable author statement /// 7323 // peptide pheromone maturation // inferred from mutant phenotype 16021 // integral to membrane // traceable author statement 8237 // metallopeptidase activity // traceable author statement /// 8237 // metallopeptidase activity // inferred from sequence similarity 1615.92126464844 843.999389648438 860.762634277344 1509.70861816406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR389C /GEN=STE23 /DB_XREF=GI:42742289 /SEG=NC_001144:-899577,902660 /DEF=involved in a-factor processing /NOTE=Ste23p; go_component: integral to membrane [goid GO:0016021] [evidence TAS] [pmid 9725832]; go_function: metallopeptidase activity [goid GO:0008237] [evidence TAS] [pmid 9725832]; go_process: peptide pheromone maturation [goid GO:0007323] [evidence TAS] [pmid 9725832]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence TAS] [pmid 9725832] --- --- --- --- scop // a.4.5.Restriction endonuclease FokI, N-terminal (recognition) do // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Restriction endonuclease FokI, N-terminal (recognition) domain // 4.80000019073486 --- S0004381 // STE23 SGDID:S0004381, Chr XII from 902660-899577, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018112 // cdna:Genscan chromosome:SGD1:XII:899577:902660:-1 // ensembl // 11 // --- /// GENEFINDER00000024864 // cdna:GeneFinder chromosome:SGD1:XII:899577:902504:-1 // ensembl // 11 // --- /// YLR389C // cdna:known chromosome:SGD1:XII:899577:902660:-1 gene:YLR389C // ensembl // 11 // --- --- No cerevisiae_gene -1.27171533370883 -1.91460003936915 -1.00391506053806 -1.87731344310164 -1.07035307688284 Max fold change below threshold 4 1.91460003936915 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772259_at YIR037W.S1 Thiol peroxidase that functions as a hydroperoxide receptor to sense intracellular hydroperoxide levels and transduce a redox signal to the Yap1p transcription factor 1.91455835828807 2364.4443359375 2852.41027832031 HYR1 6979 // response to oxidative stress // inferred from mutant phenotype 5622 // intracellular // inferred from physical interaction 4602 // glutathione peroxidase activity // inferred from sequence similarity /// 4602 // glutathione peroxidase activity // inferred from mutant phenotype /// 4602 // glutathione peroxidase activity // inferred from genetic interaction /// 9031 // thiol peroxidase activity // traceable author statement 2924.96606445313 2274.35473632813 2454.53393554688 2779.8544921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR037W /GEN=HYR1 /DB_XREF=GI:6322228 /SEG=NC_001141:+423125,423616 /DEF=Thiol peroxidase that functions as a hydroperoxide receptor to sense intracellular hydroperoxide levels and transduce a redox signal to the Yap1p transcription factor /NOTE=Hyr1p; go_component: intracellular [goid GO:0005622] [evidence IPI] [pmid 12437921]; go_function: glutathione peroxidase activity [goid GO:0004602] [evidence IMP,ISS] [pmid 10480913]; go_function: glutathione peroxidase activity [goid GO:0004602] [evidence IGI] [pmid 12437921]; go_function: thiol peroxidase activity [goid GO:0009031] [evidence TAS] [pmid 12743123]; go_process: response to oxidative stress [goid GO:0006979] [evidence IMP] [pmid 11445588] --- --- --- --- --- --- S0001476 // HYR1 SGDID:S0001476, Chr IX from 423125-423616, Verified ORF // sgd // 11 // --- /// GENSCAN00000016505 // cdna:Genscan chromosome:SGD1:IX:423125:423616:1 // ensembl // 11 // --- /// GENEFINDER00000019004 // cdna:GeneFinder chromosome:SGD1:IX:423125:423616:1 // ensembl // 11 // --- /// YIR037W // cdna:known chromosome:SGD1:IX:423125:423616:1 gene:YIR037W // ensembl // 11 // --- --- No cerevisiae_gene -1.91455835828807 -1.28606413842697 1.07864023529253 -1.19165843343756 -1.05220113954649 Max fold change below threshold 4 1.91455835828807 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775162_at YMR223W.S1 Ubiquitin-specific protease that is a component of the SAGA (Spt-Ada-Gcn5-Acetyltransferase) acetylation complex; required for SAGA-mediated deubiquitination of histone H2B 1.91374118396421 218.333930969238 390.404571533203 UBP8 16579 // protein deubiquitination // traceable author statement 124 // SAGA complex // inferred from direct assay 4843 // ubiquitin-specific protease activity // traceable author statement 361.442535400391 247.800872802734 188.866989135742 419.366607666016 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR223W /GEN=UBP8 /DB_XREF=GI:6323879 /SEG=NC_001145:+716714,718129 /DEF=Ubiquitin-specific protease that is a component of the SAGA (Spt-Ada-Gcn5-Acetyltransferase) acetylation complex; required for SAGA-mediated deubiquitination of histone H2B /NOTE=Ubp8p; go_component: SAGA complex [goid GO:0000124] [evidence IDA] [pmid 12052880]; go_function: ubiquitin-specific protease activity [goid GO:0004843] [evidence TAS] [pmid 8982460]; go_process: protein deubiquitination [goid GO:0016579] [evidence TAS] [pmid 8982460] --- --- --- --- --- --- S0004836 // UBP8 SGDID:S0004836, Chr XIII from 716714-718129, Verified ORF // sgd // 11 // --- /// GENSCAN00000018904 // cdna:Genscan chromosome:SGD1:XIII:717089:718129:1 // ensembl // 11 // --- /// YMR223W // cdna:known chromosome:SGD1:XIII:716714:718129:1 gene:YMR223W // ensembl // 11 // --- --- No cerevisiae_gene 1.31747531968129 -1.4586007357937 1.27886938502327 -1.91374118396421 1.16025803991625 Max fold change below threshold 4 1.91374118396421 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778563_at YDR111C.S1 Putative alanine transaminase (glutamic pyruvic transaminase) 1.91343466676808 315.125610351563 588.763153076172 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8483 // transaminase activity // inferred from sequence similarity 546.646118164063 285.688415527344 344.562805175781 630.880187988281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR111C /GEN=FOB1 /DB_XREF=GI:6320317 /SEG=NC_001136:-678235,679758 /DEF=putative alanine transaminase (glutamyc pyruvic transaminase) /NOTE=Ydr111cp --- --- --- ec // 1A11_CUCMA // (P23599) 1-aminocyclopropane-1-carboxylate synthase CMW33 (EC 4.4.1.14) (ACC synthase) (S-adenosyl-L-methionine methylthioadenosine-lyase) // 1.0E-122 --- --- S0002518 // ALT2 SGDID:S0002518, Chr IV from 679759-678236, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023813 // cdna:GeneFinder chromosome:SGD1:IV:678236:679759:-1 // ensembl // 11 // --- /// GENSCAN00000025179 // cdna:Genscan chromosome:SGD1:IV:678236:679753:-1 // ensembl // 11 // --- /// YDR111C // cdna:known chromosome:SGD1:IV:678236:679759:-1 gene:YDR111C // ensembl // 11 // --- --- No cerevisiae_gene -1.53762162018321 -1.91343466676808 1.50967637124913 -1.58649195430478 1.15409250523378 Max fold change below threshold 4 1.91343466676808 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771134_at SPCC1620.06c.S1 --- 1.91293008278942 --- --- --- --- 6.63772058486938 10.3307571411133 7.86942529678345 4.13506746292114 0.111571997404099 0.149657994508743 0.149657994508743 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1620.06c /DEF=ribose-phosphate pyrophosphokinase (predicted) --- --- --- --- --- --- SPCC1620.06c // |||ribose-phosphate pyrophosphokinase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.32838771188483 1.55637119836923 -1.91293008278942 1.18556139809827 -1.60522667269382 Max fold change below threshold 4 1.91293008278942 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769353_at SPBC2D10.12.S1 --- 1.91280492530908 --- --- --- --- 0.325824856758118 0.492965310811996 0.384643197059631 0.170338779687881 0.99804699420929 0.904784977436066 0.696289002895355 0.998778998851776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2D10.12 /GEN=rhp23 /DEF=involved in DNA repair (PMID 10652237) --- --- --- --- --- --- AF174293 // Schizosaccharomyces pombe Rhp23 (rhp23) mRNA, complete cds. // gb // 11 // --- /// SPBC2D10.12 // |rhp23||ubiquitin family protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.00515547183807 1.51297637545793 1.50402181751394 1.18052134170101 -1.91280492530908 Max fold change below threshold 0 1.91280492530908 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779354_at YBR180W.S1 Multidrug resistance dityrosine transporter of the major facilitator superfamily, essential for spore wall synthesis, facilitates the translocation of bisformyl dityrosine through the prospore membrane 1.91227441100916 37.1930961608887 80.8149261474609 DTR1 15837 // amine transport // inferred from mutant phenotype /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 5628 // prospore membrane // inferred from direct assay 5275 // amine transporter activity // inferred from mutant phenotype /// 15239 // multidrug transporter activity // inferred from mutant phenotype /// 15239 // multidrug transporter activity // inferred from sequence similarity 66.1785736083984 39.7789344787598 34.6072578430176 95.4512786865234 0.000244141003349796 0.00292969006113708 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR180W /GEN=DTR1 /DB_XREF=GI:6319657 /SEG=NC_001134:+589698,591416 /DEF=Multidrug resistance dityrosine transporter of the major facilitator superfamily, essential for spore wall synthesis, facilitates the translocation of bisformyl dityrosine through the prospore membrane /NOTE=Dtr1p; go_component: prospore membrane [goid GO:0005628] [evidence IDA] [pmid 12455697]; go_function: amine/polyamine transporter activity [goid GO:0005275] [evidence IMP] [pmid 12455697]; go_function: multidrug transporter activity [goid GO:0015239] [evidence IMP,ISS] [pmid 12455697]; go_process: amine/polyamine transport [goid GO:0015837] [evidence IMP] [pmid 12455697]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence IMP] [pmid 12455697] --- --- --- --- --- S0000384 // span:111-133,148-170,177-199,203-225,238-260,265-287,367-389,404-426,447-469,473-495,508-530,540-562 // numtm:12 S0000384 // DTR1 SGDID:S0000384, Chr II from 589736-591454, Verified ORF // sgd // 11 // --- /// GENSCAN00000021285 // cdna:Genscan chromosome:SGD1:II:589736:591454:1 // ensembl // 11 // --- /// GENEFINDER00000022314 // cdna:GeneFinder chromosome:SGD1:II:589736:591454:1 // ensembl // 11 // --- /// YBR180W // cdna:known chromosome:SGD1:II:589736:591454:1 gene:YBR180W // ensembl // 11 // --- --- No cerevisiae_gene 1.33373417915606 -1.66365878009465 1.20866267365662 -1.91227441100916 1.44232904219637 Max fold change below threshold 4 1.91227441100916 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774337_at YMR305C.S1 Cell wall protein with similarity to glucanases; may play a role in conjugation during mating based on mutant phenotype and its regulation by Ste12p 1.91198633132495 2412.45373535156 1886.87884521484 SCW10 747 // conjugation with cellular fusion // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay 15926 // glucosidase activity // inferred from sequence similarity 1867.29418945313 2335.31567382813 2489.591796875 1906.46350097656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR305C /GEN=SCW10 /DB_XREF=GI:6323964 /SEG=NC_001145:-879062,880231 /DEF=Soluble Cell Wall protein /NOTE=Scw10p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 9748433]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11914276]; go_function: glucosidase activity [goid GO:0015926] [evidence ISS] [pmid 9748433]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IGI] [pmid 9748433] --- --- --- --- --- --- S0004921 // SCW10 SGDID:S0004921, Chr XIII from 880231-879062, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018971 // cdna:Genscan chromosome:SGD1:XIII:879062:880231:-1 // ensembl // 11 // --- /// GENEFINDER00000021825 // cdna:GeneFinder chromosome:SGD1:XIII:879062:880231:-1 // ensembl // 11 // --- /// YMR305C // cdna:known chromosome:SGD1:XIII:879062:880231:-1 gene:YMR305C // ensembl // 11 // --- --- No cerevisiae_gene 1.91198633132495 1.25064153630343 -1.30936758060655 1.33326168470761 1.02097650801072 Max fold change below threshold 4 1.91198633132495 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772134_at YKL178C.S1 Receptor for a factor receptor, transcribed in alpha cells and required for mating by alpha cells, couples to MAP kinase cascade to mediate pheromone response; ligand bound receptors are endocytosed and recycled to the plasma membrane; GPCR 1.9117125691167 71.6982841491699 54.1175746917725 STE3 750 // signal transduction during conjugation with cellular fusion // inferred from mutant phenotype /// 750 // signal transduction during conjugation with cellular fusion // inferred from sequence similarity 5887 // integral to plasma membrane // inferred from direct assay /// 5887 // integral to plasma membrane // inferred from sequence similarity 4933 // mating-type a-factor pheromone receptor activity // inferred from mutant phenotype /// 4933 // mating-type a-factor pheromone receptor activity // inferred from sequence similarity 47.4252090454102 81.9219131469727 61.4746551513672 60.8099403381348 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL178C /GEN=STE3 /DB_XREF=GI:6322671 /SEG=NC_001143:-113220,114632 /DEF=The a factor receptor encoded by the STE3 gene allows yeast cells of the Alpha mating type to recognize cells of the a mating type /NOTE=Ste3p; go_component: integral to plasma membrane [goid GO:0005887] [evidence IDA,ISS] [pmid 3006051]; go_function: mating-type a-factor pheromone receptor activity [goid GO:0004933] [evidence IMP,ISS] [pmid 3006051]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence IMP,ISS] [pmid 3006051] --- --- --- --- --- S0001661 // span:5-24,31-53,75-97,117-139,161-183,206-228,265-287 // numtm:7 S0001661 // STE3 SGDID:S0001661, Chr XI from 114632-113220, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018287 // cdna:Genscan chromosome:SGD1:XI:113220:114506:-1 // ensembl // 11 // --- /// YKL178C // cdna:known chromosome:SGD1:XI:113220:114632:-1 gene:YKL178C // ensembl // 11 // --- --- No cerevisiae_gene 1.9117125691167 1.7273917141521 -1.10474367043643 1.29624426309865 1.28222819808572 Max fold change below threshold 4 1.9117125691167 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779688_at YLR164W.S1 YLR164Wp is homologous to TIM18p 1.91103415985531 527.501312255859 1031.72329711914 --- --- 5743 // mitochondrial inner membrane // traceable author statement --- 994.983947753906 520.652099609375 534.350524902344 1068.46264648438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR164W /GEN=MAS1 /DB_XREF=GI:6323193 /SEG=NC_001144:+493885,494391 /DEF=YLR164Wp is homologous to TIM18p /NOTE=Ylr164wp; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence TAS] [pmid 10637294]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004154 // YLR164W SGDID:S0004154, Chr XII from 493885-494391, Uncharacterized ORF // sgd // 10 // --- /// YLR164W // cdna:known chromosome:SGD1:XII:493885:494391:1 gene:YLR164W // ensembl // 10 // --- --- No cerevisiae_gene -1.90702488378388 -1.91103415985531 1.62772824648933 -1.86204354891529 1.07384912982399 Max fold change below threshold 4 1.91103415985531 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777917_at YDR277C.S1 Negative regulator of the glucose-sensing signal transduction pathway, required for repression of transcription by Rgt1p; interacts with Rgt1p and the Snf3p and Rgt2p glucose sensors; phosphorylated by Yck1p, triggering Mth1p degradation 1.91099823625673 1748.60150146484 1200.64276123047 MTH1 7165 // signal transduction // inferred from genetic interaction /// 7165 // signal transduction // inferred from mutant phenotype /// 15758 // glucose transport // inferred from mutant phenotype --- --- 1196.72619628906 1569.90234375 1927.30065917969 1204.55932617188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR277C /GEN=MTH1 /DB_XREF=GI:6320483 /SEG=NC_001136:-1014393,1015694 /DEF=Negative regulator of HXT gene expression /NOTE=Mth1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: glucose transport [goid GO:0015758] [evidence IMP] [pmid 10629208]; go_process: signal transduction [goid GO:0007165] [evidence IGI,IMP] [pmid 10629208] --- --- --- --- --- --- S0002685 // MTH1 SGDID:S0002685, Chr IV from 1015696-1014395, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025315 // cdna:Genscan chromosome:SGD1:IV:1014395:1015696:-1 // ensembl // 11 // --- /// YDR277C // cdna:known chromosome:SGD1:IV:1014395:1015696:-1 gene:YDR277C // ensembl // 11 // --- --- No cerevisiae_gene 1.91099823625673 1.31183085038008 1.43604158521259 1.61047753876874 1.00654546537638 Max fold change below threshold 4 1.91099823625673 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774503_at YKL099C.S1 Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA 1.91094078284296 124.364246368408 235.814659118652 UTP11 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction 30515 // snoRNA binding // inferred from physical interaction 231.476669311523 121.132308959961 127.596183776855 240.152648925781 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL099C /GEN=UTP11 /DB_XREF=GI:6322750 /SEG=NC_001143:-255347,256117 /DEF=Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA /NOTE=Utp11p; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: snoRNA binding [goid GO:0030515] [evidence IPI] [pmid 12068309]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP,IPI] [pmid 12068309] --- --- --- --- --- --- S0001582 // UTP11 SGDID:S0001582, Chr XI from 256117-255347, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018342 // cdna:Genscan chromosome:SGD1:XI:255347:256117:-1 // ensembl // 11 // --- /// GENEFINDER00000023100 // cdna:GeneFinder chromosome:SGD1:XI:255347:256117:-1 // ensembl // 11 // --- /// YKL099C // cdna:known chromosome:SGD1:XI:255347:256117:-1 gene:YKL099C // ensembl // 11 // --- --- No cerevisiae_gene 1.88447912680607 -1.91094078284296 -1.03073228949136 -1.81413473710419 1.03748101111037 Max fold change below threshold 4 1.91094078284296 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775028_at YBR159W.S1 microsomal beta-keto-reductase 1.91029034789108 831.154724121094 1561.93896484375 --- 30497 // fatty acid elongation // inferred from genetic interaction /// 30497 // fatty acid elongation // inferred from mutant phenotype /// 30497 // fatty acid elongation // inferred from sequence similarity /// 30497 // fatty acid elongation // inferred from physical interaction 5783 // endoplasmic reticulum // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity 45703 // ketoreductase activity // inferred from sequence similarity /// 45703 // ketoreductase activity // inferred from mutant phenotype /// 45703 // ketoreductase activity // inferred from physical interaction /// 45703 // ketoreductase activity // inferred from genetic interaction 1504.42407226563 787.536865234375 874.772583007813 1619.45385742188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR159W /GEN=AMN1 /DB_XREF=GI:6319635 /SEG=NC_001134:+558641,559684 /DEF=microsomal beta-keto-reductase /NOTE=Ybr159wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 12087109]; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 11792704]; go_function: ketoreductase activity [goid GO:0045703] [evidence ISS] [pmid 11792704]; go_function: ketoreductase activity [goid GO:0045703] [evidence IPI,IGI,IMP] [pmid 12087109]; go_process: fatty acid elongation [goid GO:0030497] [evidence ISS,IPI,IGI,IMP] [pmid 12087109] --- --- --- --- --- S0000363 // span:20-42 // numtm:1 S0000363 // YBR159W SGDID:S0000363, Chr II from 558679-559722, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021267 // cdna:Genscan chromosome:SGD1:II:558679:559722:1 // ensembl // 11 // --- /// GENEFINDER00000022221 // cdna:GeneFinder chromosome:SGD1:II:558679:559722:1 // ensembl // 11 // --- /// YBR159W // cdna:known chromosome:SGD1:II:558679:559722:1 gene:YBR159W // ensembl // 11 // --- --- No cerevisiae_gene -1.09043553567965 -1.91029034789108 -1.30391236916035 -1.71978877880788 1.07646101074614 Max fold change below threshold 4 1.91029034789108 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775633_at YBR201W.S1 Endoplasmic reticulum membrane protein, required for ER-associated protein degradation, involved in the retrograde transport of misfolded or unassembled proteins; N- and C- termini protrude into the cytoplasm, has similarity to Dfm1p 1.9102809296 206.638221740723 376.740341186523 DER1 30433 // ER-associated protein catabolism // inferred from mutant phenotype 5789 // endoplasmic reticulum membrane // inferred from direct assay --- 352.524658203125 184.540740966797 228.735702514648 400.956024169922 0.00122069998178631 0.00292969006113708 0.00292969006113708 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR201W /GEN=DER1 /DB_XREF=GI:6319678 /SEG=NC_001134:+623534,624169 /DEF=Endoplasmic reticulum membrane protein, required for the protein degradation process associated with the ER, involved in the retrograde transport of misfolded or unassembled proteins /NOTE=Der1p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 8631297]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER-associated protein catabolism [goid GO:0030433] [evidence IMP] [pmid 8631297] --- --- --- --- --- S0000405 // span:13-35,55-77,94-116,143-165 // numtm:4 S0000405 // DER1 SGDID:S0000405, Chr II from 623572-624207, Verified ORF // sgd // 11 // --- /// GENSCAN00000021301 // cdna:Genscan chromosome:SGD1:II:623572:624207:1 // ensembl // 11 // --- /// YBR201W // cdna:known chromosome:SGD1:II:623572:624207:1 gene:YBR201W // ensembl // 11 // --- --- No cerevisiae_gene -1.14586089938083 -1.9102809296 1.52483792620336 -1.54118773032622 1.13738433564806 Max fold change below threshold 4 1.9102809296 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779319_at YBR152W.S1 Suppressor of Pre-mRNA Processing mutant; U4/U6.U5-associated snRNP protein; contains a PEST proteolysis motif 1.9099002831247 26.7516965866089 47.2459392547607 SPP381 398 // nuclear mRNA splicing, via spliceosome // inferred from genetic interaction 5681 // spliceosome complex // inferred from direct assay --- 42.8459167480469 29.3570575714111 24.1463356018066 51.6459617614746 0.00805663969367743 0.022705078125 0.0107421996071935 0.0107421996071935 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR152W /GEN=SPP381 /DB_XREF=GI:6319628 /SEG=NC_001134:+546332,547207 /DEF=Suppressor of Pre-mRNA Processing mutant /NOTE=Spp381p; go_component: spliceosome complex [goid GO:0005681] [evidence IDA] [pmid 9858581]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IGI] [pmid 9858581] --- --- --- --- --- --- S0000356 // SPP381 SGDID:S0000356, Chr II from 546370-547245, Verified ORF // sgd // 11 // --- /// GENSCAN00000021261 // cdna:Genscan chromosome:SGD1:II:546370:547245:1 // ensembl // 11 // --- /// YBR152W // cdna:known chromosome:SGD1:II:546370:547245:1 gene:YBR152W // ensembl // 11 // --- --- No cerevisiae_gene 1.9099002831247 -1.45947585665982 1.0597750138001 -1.77442728597051 1.20538818355028 Max fold change below threshold 4 1.9099002831247 Max fold change below threshold PPPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1775209_at YDR092W.S1 Ubiquitin-conjugating enzyme involved in the error-free DNA postreplication repair pathway; interacts with Mms2p to assemble ubiquitin chains at the Ub Lys-63 residue; DNA damage triggers redistribution from the cytoplasm to the nucleus 1.90976893649966 1271.82159423828 2167.24597167969 UBC13 209 // protein polyubiquitination // traceable author statement /// 6301 // postreplication repair // inferred from mutant phenotype /// 6301 // postreplication repair // inferred from genetic interaction /// 6513 // protein monoubiquitination // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4840 // ubiquitin conjugating enzyme activity // traceable author statement 2213.82690429688 1159.2119140625 1384.43127441406 2120.6650390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR092W /GEN=UBC13 /DB_XREF=GI:6320297 /SEG=NC_001136:+629870,630599 /DEF=Ubiquitin-conjugating enzyme involved in the error-free DNA postreplication repair pathway; interacts with Mms2p to assemble ubiquitin chains at the Ub Lys-63 residue; DNA damage triggers redistribution from the cytoplasm to the nucleus /NOTE=Ubc13p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10880451]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10880451]; go_function: ubiquitin conjugating enzyme activity [goid GO:0004840] [evidence TAS] [pmid 8982460]; go_process: postreplication repair [goid GO:0006301] [evidence IGI,IMP] [pmid 10089880]; go_process: protein monoubiquitination [goid GO:0006513] [evidence TAS] [pmid 8982460]; go_process: protein polyubiquitination [goid GO:0000209] [evidence TAS] [pmid 8982460] --- --- --- --- --- --- S0002499 // UBC13 SGDID:S0002499, Chr IV from 629871-629900,630169-630600, intron sequence removed, Verified ORF // sgd // 11 // --- /// YDR092W // cdna:known chromosome:SGD1:IV:629871:630600:1 gene:YDR092W // ensembl // 11 // --- GENEFINDER00000023546 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.81815383850378 -1.90976893649966 -1.17824847215048 -1.59908761468412 -1.04393049515993 Max fold change below threshold 4 1.90976893649966 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778578_at YDL115C.S1 Protein of unknown function, deletion causes hypersensitivity to the K1 killer toxin 1.90932328740348 1084.12493896484 945.370666503906 IWR1 7126 // meiosis // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 911.598327636719 1041.01928710938 1127.23059082031 979.143005371094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL115C /GEN=IWR1 /DB_XREF=GI:44829553 /SEG=NC_001136:-253995,254717 /DEF=Interacts with RNA Polymerase II /NOTE=Iwr1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiosis [goid GO:0007126] [evidence TAS] [pmid 10734188] --- --- --- --- --- --- S0002273 // IWR1 SGDID:S0002273, Chr IV from 254717-253995, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023654 // cdna:GeneFinder chromosome:SGD1:IV:253995:254717:-1 // ensembl // 11 // --- /// GENSCAN00000025011 // cdna:Genscan chromosome:SGD1:IV:253995:254717:-1 // ensembl // 11 // --- /// YDL115C // cdna:known chromosome:SGD1:IV:253995:254717:-1 gene:YDL115C // ensembl // 11 // --- --- No cerevisiae_gene -1.90932328740348 1.14197147531871 1.15009687909319 1.23654306578492 1.07409478021914 Max fold change below threshold 4 1.90932328740348 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780008_at YOL087C.S1 Hypothetical protein 1.90913884471485 1193.63778686523 1141.98345947266 --- --- 5737 // cytoplasm // inferred from direct assay --- 1111.1220703125 1008.26519775391 1379.01037597656 1172.84484863281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL087C /GEN=MPD2 /DB_XREF=GI:6324485 /SEG=NC_001147:-155286,158636 /DEF=Hypothetical ORF /NOTE=Yol087cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005447 // YOL087C SGDID:S0005447, Chr XV from 158636-155286, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017397 // cdna:Genscan chromosome:SGD1:XV:155286:158369:-1 // ensembl // 11 // --- /// GENEFINDER00000022825 // cdna:GeneFinder chromosome:SGD1:XV:155286:158042:-1 // ensembl // 11 // --- /// YOL087C // cdna:known chromosome:SGD1:XV:155286:158636:-1 gene:YOL087C // ensembl // 11 // --- --- No cerevisiae_gene -1.90913884471485 -1.10201370907944 1.30360209581917 1.24109709708918 1.05554995258348 Max fold change below threshold 4 1.90913884471485 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780225_at SPBC16A3.12c.S1 --- 1.9085949805705 --- --- --- --- 6.14811754226685 7.36045551300049 4.33228540420532 5.56093263626099 0.030273400247097 0.129638999700546 0.030273400247097 0.0375977009534836 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16A3.12c /DEF=triglyceride lipase-cholesterol esterase (predicted) --- --- --- --- --- --- SPBC16A3.12c // |||triglyceride lipase-cholesterol esterase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- D89249 // gb // 6 // Cross Hyb Matching Probes No No -1.0799508066167 1.197188482881 1.9085949805705 -1.41913954613861 -1.10559108416042 Max fold change below threshold 4 1.9085949805705 Max fold change below threshold PPAPPP No 4 0 PAPP 1 3 0 No No 2 < x = 3
1778809_at YKL104C.S1 Glutamine-fructose-6-phosphate amidotransferase, catalyzes the formation of glucosamine-6-P and glutamate from fructose-6-P and glutamine in the first step of chitin biosynthesis 1.90842400556091 758.98388671875 1197.06494140625 GFA1 6038 // cell wall chitin biosynthesis // inferred from genetic interaction --- 4360 // glutamine-fructose-6-phosphate transaminase (isomerizing) activity // inferred from direct assay 1182.38049316406 669.94140625 848.0263671875 1211.74938964844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL104C /GEN=GFA1 /DB_XREF=GI:6322745 /SEG=NC_001143:-242866,245019 /DEF=Glutamine-fructose-6-phosphate amidotransferase, catalyzes the formation of glucosamine-6-P and glutamate from fructose-6-P and glutamine in the first step of chitin biosynthesis /NOTE=Gfa1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: glutamine-fructose-6-phosphate transaminase (isomerizing) activity [goid GO:0004360] [evidence IDA] [pmid 2656689]; go_process: cell wall chitin biosynthesis [goid GO:0006038] [evidence IGI] [pmid 11895440] --- --- --- --- --- --- S0001587 // GFA1 SGDID:S0001587, Chr XI from 245019-242866, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018339 // cdna:Genscan chromosome:SGD1:XI:242866:245019:-1 // ensembl // 11 // --- /// GENEFINDER00000023049 // cdna:GeneFinder chromosome:SGD1:XI:242866:245019:-1 // ensembl // 11 // --- /// YKL104C // cdna:known chromosome:SGD1:XI:242866:245019:-1 gene:YKL104C // ensembl // 11 // --- --- No cerevisiae_gene -1.33928921053505 -1.76490135127256 -1.90842400556091 -1.39427326662667 1.0248387863756 Max fold change below threshold 4 1.90842400556091 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773457_at YDL215C.S1 NAD(+)-dependent glutamate dehydrogenase, degrades glutamate to ammonia and alpha-ketoglutarate; expression sensitive to nitrogen catabolite repression and intracellular ammonia levels 1.90835343225829 3492.36926269531 1820.07934570313 GDH2 6807 // nitrogen compound metabolism // inferred from mutant phenotype 5625 // soluble fraction // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4352 // glutamate dehydrogenase activity // inferred from sequence similarity /// 4352 // glutamate dehydrogenase activity // inferred from mutant phenotype 1886.26940917969 3599.66870117188 3385.06982421875 1753.88928222656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL215C /GEN=GDH2 /DB_XREF=GI:6319986 /SEG=NC_001136:-70641,73919 /DEF=NAD(+)-dependent glutamate dehydrogenase, degrades glutamate to ammonia and alpha-ketoglutarate; expression sensitive to nitrogen catabolite repression and intracellular ammonia levels /NOTE=Gdh2p; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 11562373]; go_function: glutamate dehydrogenase activity [goid GO:0004352] [evidence IMP,ISS] [pmid 1975578]; go_process: nitrogen metabolism [goid GO:0006807] [evidence IMP] [pmid 1975578] --- --- --- --- --- --- S0002374 // GDH2 SGDID:S0002374, Chr IV from 73919-70641, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023521 // cdna:GeneFinder chromosome:SGD1:IV:70641:73841:-1 // ensembl // 10 // --- /// GENSCAN00000024942 // cdna:Genscan chromosome:SGD1:IV:70641:73406:-1 // ensembl // 10 // --- /// YDL215C // cdna:known chromosome:SGD1:IV:70641:73919:-1 gene:YDL215C // ensembl // 10 // --- --- No cerevisiae_gene 1.12651738551346 1.90835343225829 1.2434710932385 1.7945844892278 -1.07547804088584 Max fold change below threshold 4 1.90835343225829 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773305_at YLR205C.S1 ER localized, heme-binding peroxidase involved in the degradation of heme; does not exhibit heme oxygenase activity despite similarity to heme oxygenases; expression regulated by AFT1 1.90798743064139 2528.1123046875 3826.41625976563 HMX1 6879 // iron ion homeostasis // inferred from sequence similarity /// 6879 // iron ion homeostasis // inferred from expression pattern /// 42167 // heme catabolism // inferred from mutant phenotype /// 42167 // heme catabolism // inferred from genetic interaction 5783 // endoplasmic reticulum // inferred from direct assay /// 16020 // membrane // inferred from direct assay 4392 // heme oxygenase (decyclizing) activity // inferred from sequence similarity /// 4392 // heme oxygenase (decyclizing) activity // inferred from direct assay /// 4392 // heme oxygenase (decyclizing) activity // inferred from expression pattern /// 4601 // peroxidase activity // inferred from direct assay /// 20037 // heme binding // inferred from direct assay 4259.4990234375 2823.76806640625 2232.45654296875 3393.33349609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR205C /GEN=HMX1 /DB_XREF=GI:42742287 /SEG=NC_001144:-552726,553679 /DEF=ER localized, heme-binding peroxidase involved in the degradation of heme; does not exhibit heme oxygenase activity despite similarity to heme oxygenases; expression regulated by AFT1 /NOTE=Hmx1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 12840010]; go_component: membrane [goid GO:0016020] [evidence IDA] [pmid 11566881]; go_function: heme binding [goid GO:0020037] [evidence IDA] [pmid 12699699]; go_function: heme oxygenase (decyclizing) activity [goid GO:0004392] [evidence IEP,ISS] [pmid 11112771]; go_function: heme oxygenase (decyclizing) activity [goid GO:0004392] [evidence IDA] [pmid 12699699]; go_function: peroxidase activity [goid GO:0004601] [evidence IDA] [pmid 12699699]; go_process: heme catabolism [goid GO:0042167] [evidence IGI,IMP] [pmid 12840010]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IEP,ISS] [pmid 11112771] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 5.69999980926514 S0004195 // span:288-310 // numtm:1 S0004195 // HMX1 SGDID:S0004195, Chr XII from 553679-552726, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017978 // cdna:Genscan chromosome:SGD1:XII:552726:553679:-1 // ensembl // 11 // --- /// GENEFINDER00000024658 // cdna:GeneFinder chromosome:SGD1:XII:552726:553559:-1 // ensembl // 11 // --- /// YLR205C // cdna:known chromosome:SGD1:XII:552726:553679:-1 gene:YLR205C // ensembl // 11 // --- --- No cerevisiae_gene -1.28976491809096 -1.50844507171528 -1.27110966046979 -1.90798743064139 -1.25525505475393 Max fold change below threshold 4 1.90798743064139 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769461_at YMR317W.S1 Hypothetical protein 1.90798533328232 21.6788864135742 12.1195921897888 --- --- --- --- 13.2100772857666 21.5738353729248 21.7839374542236 11.029107093811 0.111571997404099 0.00585938012227416 0.00585938012227416 0.00122069998178631 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR317W /GEN=DIA1 /DB_XREF=GI:6323978 /SEG=NC_001145:+907362,910784 /DEF=Hypothetical ORF /NOTE=Ymr317wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004936 // YMR317W SGDID:S0004936, Chr XIII from 907362-910784, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018984 // cdna:Genscan chromosome:SGD1:XIII:908940:910784:1 // ensembl // 11 // --- /// GENEFINDER00000022019 // cdna:GeneFinder chromosome:SGD1:XIII:909537:910784:1 // ensembl // 11 // --- /// YMR317W // cdna:known chromosome:SGD1:XIII:907362:910784:1 gene:YMR317W // ensembl // 11 // --- --- No cerevisiae_gene 1.90798533328232 1.63313468242687 1.10876234589515 1.64903936464437 -1.1977467598605 Max fold change below threshold 4 1.90798533328232 Max fold change below threshold APPPPP No 3 0 APPP 1 3 0 No No 2 < x = 3
1775251_at YHR015W.S1 Putative RNA-binding protein, interacts with Mex67p, which is a component of the nuclear pore involved in nuclear mRNA export 1.90793187149287 242.667121887207 147.503471374512 MIP6 6406 // mRNA-nucleus export // inferred from physical interaction 5643 // nuclear pore // inferred from physical interaction 3723 // RNA binding // inferred from sequence similarity 137.555633544922 222.887466430664 262.44677734375 157.451309204102 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR015W /GEN=MIP6 /DB_XREF=GI:6321803 /SEG=NC_001140:+134546,136525 /DEF=RNA-binding protein, interacts with MEX67 /NOTE=Mip6p; go_component: nuclear pore [goid GO:0005643] [evidence IPI] [pmid 9214641]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 9214641]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IPI] [pmid 9214641] --- --- --- --- --- --- S0001057 // MIP6 SGDID:S0001057, Chr VIII from 134546-136525, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020119 // cdna:GeneFinder chromosome:SGD1:VIII:134546:136525:1 // ensembl // 11 // --- /// YHR015W // cdna:known chromosome:SGD1:VIII:134546:136525:1 gene:YHR015W // ensembl // 11 // --- --- No cerevisiae_gene -1.36796734789013 1.62034415230166 1.46746067542363 1.90793187149287 1.14463730162445 Max fold change below threshold 4 1.90793187149287 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777170_at YNL260C.S1 Protein required for cell viability 1.90747442065348 97.2276382446289 169.292755126953 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 154.383605957031 80.9361343383789 113.519142150879 184.201904296875 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL260C /GEN=ORC5 /DB_XREF=GI:6324069 /SEG=NC_001146:-156858,157454 /DEF=Protein required for cell viability /NOTE=Ynl260cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14690591]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005204 // YNL260C SGDID:S0005204, Chr XIV from 157454-156858, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019833 // cdna:Genscan chromosome:SGD1:XIV:156858:157346:-1 // ensembl // 11 // --- /// YNL260C // cdna:known chromosome:SGD1:XIV:156858:157454:-1 gene:YNL260C // ensembl // 11 // --- --- No cerevisiae_gene -1.18303744001317 -1.90747442065348 1.25795053492479 -1.35997861710265 1.19314420177582 Max fold change below threshold 4 1.90747442065348 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775426_at SPBC317.01.S1 --- 1.90743535924635 --- --- --- --- 13.7647686004639 7.21637487411499 17.9269199371338 13.7347841262817 0.0239257998764515 0.601073980331421 0.24609400331974 0.0805663987994194 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC317.01 /GEN=pvg4 /DEF=MADS-box transcription factor --- --- --- --- --- --- SPBC317.01 // |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.50164090723901 -1.90743535924635 -1.32048830984904 1.30237713814743 -1.00218310487493 Max fold change below threshold 4 1.90743535924635 Max fold change below threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1776381_at SPAC7D4.14c.S1 --- 1.90738535502083 --- --- --- --- 33.8194694519043 42.8199195861816 54.0812187194824 17.7308006286621 0.219482004642487 0.0952147990465164 0.000732421991415322 0.0952147990465164 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC7D4.14c /DEF=sequence orphan --- --- --- --- --- --- SPAC7D4.14c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.79063412238019 1.26613220964561 -1.80053838012147 1.59911493574413 -1.90738535502083 Max fold change below threshold 4 1.90738535502083 Max fold change below threshold APAAPA No 3 0 AAPA 3 1 0 No No x = 1
1777364_s_at YIL082W-A.S1 TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// Hypothetical protein /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition 1.90713123197865 59.3491668701172 118.901824951172 --- 6319 // Ty element transposition // inferred from sequence similarity 943 // retrotransposon nucleocapsid // inferred from sequence similarity 3723 // RNA binding // inferred from sequence similarity /// 3887 // DNA-directed DNA polymerase activity // inferred from sequence similarity /// 3964 // RNA-directed DNA polymerase activity // inferred from sequence similarity /// 4540 // ribonuclease activity // inferred from sequence similarity /// 5515 // protein binding // inferred from sequence similarity /// 8233 // peptidase activity // inferred from sequence similarity 98.5469818115234 67.0254440307617 51.6728897094727 139.25666809082 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL082W-A /GEN=SDS3 /DB_XREF=GI:6322110 /SEG=NC_001141:+205632,210129 /DEF=Hypothetical ORF /NOTE=Yil082w-ap; go_component: retrotransposon nucleocapsid [goid GO:0000943] [evidence ISS] [pmid 9582191]; go_function: DNA-directed DNA polymerase activity [goid GO:0003887] [evidence ISS] [pmid 9582191]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 9582191]; go_function: RNA-directed DNA polymerase activity [goid GO:0003964] [evidence ISS] [pmid 9582191]; go_function: peptidase activity [goid GO:0008233] [evidence ISS] [pmid 9582191]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 9582191]; go_function: ribonuclease activity [goid GO:0004540] [evidence ISS] [pmid 9582191]; go_process: Ty element transposition [goid GO:0006319] [evidence ISS] [pmid 9582191] --- --- --- --- --- --- S0007347 // YGR109W-B SGDID:S0007347, Chr VII from 707614-708463,708465-712258, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0001342 // YIL080W SGDID:S0001342, Chr IX from 205632-206481,206483-210354, one base removed to allow translational frameshift, Pseudogene Ty ORF // sgd // 11 // --- /// S0003537 // YIL082W-A SGDID:S0003537, Chr IX from 205632-206482,206484-210129, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// GENSCAN00000016415 // cdna:Genscan chromosome:SGD1:IX:206578:210129:1 // ensembl // 11 // --- /// GENEFINDER00000019075 // cdna:GeneFinder chromosome:SGD1:IX:206578:210129:1 // ensembl // 11 // --- /// GENSCAN00000019425 // cdna:Genscan chromosome:SGD1:VII:708560:712258:1 // ensembl // 11 // --- /// GENEFINDER00000021641 // cdna:GeneFinder chromosome:SGD1:VII:708560:712258:1 // ensembl // 11 // --- /// YIL082W-A // cdna:known chromosome:SGD1:IX:205632:210129:1 gene:YIL082W-A // ensembl // 11 // --- /// YIL080W // cdna:pseudogene chromosome:SGD1:IX:205632:210354:1 gene:YIL080W // ensembl // 11 // --- /// YGR109W-B // cdna:known chromosome:SGD1:VII:707614:712258:1 gene:YGR109W-B // ensembl // 11 // --- --- No cerevisiae_gene 1.23076687247179 -1.47029211423493 1.6485919445681 -1.90713123197865 1.41309927032729 Max fold change below threshold 4 1.90713123197865 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777990_at YOR293W.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Ap and has similarity to rat ribosomal protein S10 /// Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Bp and has similarity to rat ribosomal protein S10 1.90597788346335 683.167114257813 1327.56842041016 RPS10B /// RPS10A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 1267.9716796875 665.260437011719 701.073791503906 1387.16516113281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR293W /GEN=RPS10A /DB_XREF=GI:6324867 /SEG=NC_001147:+867095,867849 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Bp and has similarity to rat ribosomal protein S10 /NOTE=Rps10ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0005819 // RPS10A SGDID:S0005819, Chr XV from 867095-867146,867584-867849, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022906 // cdna:GeneFinder chromosome:SGD1:XV:867095:867849:1 // ensembl // 11 // --- /// YOR293W // cdna:known chromosome:SGD1:XV:867095:867849:1 gene:YOR293W // ensembl // 11 // --- GENSCAN00000017741 // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene 1.43736671125991 -1.90597788346335 -1.75238005261919 -1.80861372234086 1.09400326786059 Max fold change below threshold 4 1.90597788346335 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776156_at YAL061W.S1 putative polyol dehydrogenase 1.90587572061322 3223.22619628906 3158.94104003906 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 16616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from sequence similarity 3487.19653320313 3003.88427734375 3442.56811523438 2830.685546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL061W /GEN=GDH3 /DB_XREF=GI:6319257 /SEG=NC_001133:+33449,34702 /DEF=putative polyol dehydrogenase /NOTE=Yal061wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [goid GO:0016616] [evidence ISS] [pmid 10938079]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000057 // YAL061W SGDID:S0000057, Chr I from 33449-34702, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018239 // cdna:GeneFinder chromosome:SGD1:I:33449:34702:1 // ensembl // 11 // --- /// GENSCAN00000020325 // cdna:Genscan chromosome:SGD1:I:33449:34702:1 // ensembl // 11 // --- /// YAL061W // cdna:known chromosome:SGD1:I:33449:34702:1 gene:YAL061W // ensembl // 11 // --- --- No cerevisiae_gene -1.90587572061322 -1.16089576402948 1.14013456172017 -1.01296369932994 -1.23192649817741 Max fold change below threshold 4 1.90587572061322 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775350_at YMR039C.S1 Transcriptional coactivator, facilitates elongation by influencing enzymes that modify RNAP II, acts in a peroxide resistance pathway involving Rad2p; suppressor of TFIIB mutations 1.90585104635355 2034.93475341797 1121.27593994141 SUB1 6369 // transcription termination from RNA polymerase II promoter // inferred from genetic interaction /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence similarity /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from physical interaction 5634 // nucleus // inferred from curator 3713 // transcription coactivator activity // inferred from genetic interaction /// 3713 // transcription coactivator activity // inferred from sequence similarity /// 3713 // transcription coactivator activity // inferred from physical interaction 1099.7548828125 2095.96899414063 1973.90051269531 1142.79699707031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR039C /GEN=SUB1 /DB_XREF=GI:6323682 /SEG=NC_001145:-348643,349521 /DEF=Suppressor of TFIIB mutations /NOTE=Sub1p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 8617240]; go_function: transcription coactivator activity [goid GO:0003713] [evidence IGI,IPI,ISS] [pmid 8617240]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IGI,IPI,ISS] [pmid 8617240]; go_process: transcription termination from Pol II promoter [goid GO:0006369] [evidence IGI] [pmid 11389848] --- --- --- --- --- --- S0004642 // SUB1 SGDID:S0004642, Chr XIII from 349521-348643, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018748 // cdna:Genscan chromosome:SGD1:XIII:348643:349521:-1 // ensembl // 11 // --- /// GENEFINDER00000022069 // cdna:GeneFinder chromosome:SGD1:XIII:348643:349521:-1 // ensembl // 11 // --- /// YMR039C // cdna:known chromosome:SGD1:XIII:348643:349521:-1 gene:YMR039C // ensembl // 11 // --- --- No cerevisiae_gene 1.58396269054983 1.90585104635355 -1.01915815868551 1.79485496590593 1.03913791603065 Max fold change below threshold 4 1.90585104635355 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769591_at YAR002W.S1 Subunit of the nuclear pore complex (NPC), functions to anchor Nup2p to the NPC in a dynamic process that is controlled by the nucleoplasmic concentration of Gsp1p-GTP; potential Cdc28p substrate 1.90527234115299 482.949996948242 925.976013183594 NUP60 59 // protein-nucleus import, docking // inferred from mutant phenotype /// 59 // protein-nucleus import, docking // inferred from physical interaction /// 6913 // nucleocytoplasmic transport // inferred from mutant phenotype 5643 // nuclear pore // traceable author statement 17056 // structural constituent of nuclear pore // traceable author statement 889.416748046875 466.818695068359 499.081298828125 962.535278320313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR002W /GEN=NUP60 /DB_XREF=GI:6319318 /SEG=NC_001133:+152261,153880 /DEF=Subunit of the nuclear pore complex (NPC), functions to anchor Nup2p to the NPC in a dynamic process that is controlled by the nucleoplasmic concentration of Gsp1p-GTP; potential Cdc28p substrate /NOTE=Nup60p; go_component: nuclear pore [goid GO:0005643] [evidence TAS] [pmid 11343909]; go_function: structural constituent of nuclear pore [goid GO:0017056] [evidence TAS] [pmid 11535617]; go_process: nucleocytoplasmic transport [goid GO:0006913] [evidence IMP] [pmid 11535617]; go_process: protein-nucleus import, docking [goid GO:0000059] [evidence IMP,IPI] [pmid 11535617] --- --- --- --- --- --- S0000063 // NUP60 SGDID:S0000063, Chr I from 152259-153878, Verified ORF // sgd // 10 // --- /// GENEFINDER00000018211 // cdna:GeneFinder chromosome:SGD1:I:152469:153878:1 // ensembl // 10 // --- /// GENSCAN00000020379 // cdna:Genscan chromosome:SGD1:I:152469:153878:1 // ensembl // 10 // --- /// YAR002W // cdna:known chromosome:SGD1:I:152259:153878:1 gene:YAR002W // ensembl // 10 // --- --- No cerevisiae_gene 1.24290354430943 -1.90527234115299 -1.35195677509941 -1.78210794540946 1.08220952712438 Max fold change below threshold 4 1.90527234115299 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771290_at SPCC4G3.15c.S1 --- 1.90516757319358 --- --- --- --- 7.49239921569824 4.80195760726929 11.7997646331787 7.07635068893433 0.398925989866257 0.601073980331421 0.398925989866257 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4G3.15c /DEF=CCR4-Not complex (predicted) --- --- --- --- --- --- SPCC4G3.15c // |||CCR4-Not complex |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.90516757319358 -1.56028016664623 -1.14420131977801 1.5748980124358 -1.05879422106857 Max fold change below threshold 4 1.90516757319358 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771836_at YER146W.S1 Component of small nuclear ribonucleoprotein complexes involved in RNA processing, splicing, and decay 1.90512180731963 1038.07824707031 598.522674560547 LSM5 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction /// 398 // nuclear mRNA splicing, via spliceosome // traceable author statement /// 6364 // rRNA processing // inferred from mutant phenotype /// 6402 // mRNA catabolism // traceable author statement 5688 // snRNP U6 // traceable author statement /// 5730 // nucleolus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 3723 // RNA binding // traceable author statement 613.569396972656 1168.92443847656 907.232055664063 583.475952148438 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER146W /GEN=LSM5 /DB_XREF=GI:6320994 /SEG=NC_001137:+462580,462861 /DEF=Like Sm-E protein /NOTE=Lsm5p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence IDA] [pmid 10377396]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10377396]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 12438310] --- --- --- --- --- --- S0000948 // LSM5 SGDID:S0000948, Chr V from 462580-462861, Verified ORF // sgd // 11 // --- /// GENSCAN00000016925 // cdna:Genscan chromosome:SGD1:V:462580:462861:1 // ensembl // 11 // --- /// YER146W // cdna:known chromosome:SGD1:V:462580:462861:1 gene:YER146W // ensembl // 11 // --- YER145C-A // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene 1.13011084262659 1.90512180731963 -1.00932220722092 1.47861360123294 -1.05157615273331 Max fold change below threshold 4 1.90512180731963 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772095_at YIL110W.S1 Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family 1.90452888093138 236.391563415527 434.409362792969 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from sequence similarity 406.215789794922 213.28938293457 259.493743896484 462.602935791016 0.000244141003349796 0.000244140625 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL110W /GEN=COX5B /DB_XREF=GI:6322081 /SEG=NC_001141:+156042,157175 /DEF=Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family /NOTE=Yil110wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: S-adenosylmethionine-dependent methyltransferase activity [goid GO:0008757] [evidence ISS] [pmid 12872006]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001372 // YIL110W SGDID:S0001372, Chr IX from 156042-157175, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016394 // cdna:Genscan chromosome:SGD1:IX:156042:157175:1 // ensembl // 11 // --- /// GENEFINDER00000019072 // cdna:GeneFinder chromosome:SGD1:IX:156042:157175:1 // ensembl // 11 // --- /// YIL110W // cdna:known chromosome:SGD1:IX:156042:157175:1 gene:YIL110W // ensembl // 11 // --- --- No cerevisiae_gene 1.88043103689846 -1.90452888093138 1.07726777472772 -1.56541650559779 1.13881081782803 Max fold change below threshold 4 1.90452888093138 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771752_at YCL027W.S1 Membrane protein localized to the shmoo tip, required for cell fusion; expression regulated by mating pheromone; proposed to coordinate signaling, fusion, and polarization events required for fusion; potential Cdc28p substrate 1.90445629316425 91.2166404724121 123.39208984375 FUS1 747 // conjugation with cellular fusion // inferred from mutant phenotype /// 31385 // regulation of termination of mating projection growth // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay --- 110.52734375 111.401931762695 71.0313491821289 136.2568359375 0.000244141003349796 0.000732421991415322 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL027W /GEN=FUS1 /DB_XREF=GI:10383763 /SEG=NC_001135:+71803,73341 /DEF=Membrane protein localized to the shmoo tip, required for cell fusion; expression regulated by mating pheromone; proposed to coordinate signaling, fusion, and polarization events required for fusion; potential Cdc28p substrate /NOTE=Fus1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 2690078]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 12374868]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IMP] [pmid 3313002] --- --- --- --- --- S0000532 // span:72-94 // numtm:1 S0000532 // FUS1 SGDID:S0000532, Chr III from 71803-73341, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023378 // cdna:GeneFinder chromosome:SGD1:III:71857:73341:1 // ensembl // 11 // --- /// YCL027W // cdna:known chromosome:SGD1:III:71803:73341:1 gene:YCL027W // ensembl // 11 // --- --- No cerevisiae_gene -1.90445629316425 1.00791286556812 -1.23512495726481 -1.55603610268757 1.23278847852978 Max fold change below threshold 4 1.90445629316425 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777095_at YLL046C.S1 Ribonucleoprotein that contains two RNA recognition motifs (RRM) 1.90370598198606 68.3272342681885 81.4331741333008 RNP1 42254 // ribosome biogenesis and assembly // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 3723 // RNA binding // inferred from sequence similarity 66.0075531005859 92.2818984985352 44.3725700378418 96.8587951660156 0.000244141003349796 0.00195312988944352 0.00585938012227416 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL046C /GEN=RNP1 /DB_XREF=GI:6322982 /SEG=NC_001144:-46713,47462 /DEF=Ribonucleoprotein that contains two RNA recognition motifs (RRM) /NOTE=Rnp1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 8341595]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 8341595]; go_process: ribosome biogenesis and assembly [goid GO:0042254] [evidence IMP] [pmid 8341595] --- --- --- --- --- --- S0003969 // RNP1 SGDID:S0003969, Chr XII from 47462-46713, reverse complement, Verified ORF // sgd // 11 // --- /// YLL046C // cdna:known chromosome:SGD1:XII:46713:47462:-1 gene:YLL046C // ensembl // 11 // --- YLL047W // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene 1.90370598198606 1.39805058911835 -1.22232004307917 -1.48757561358951 1.46738957310562 Max fold change below threshold 4 1.90370598198606 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1778624_at YGL221C.S1 Protein of unknown function, similar to Listeria monocytogenes major sigma factor (rpoD gene product) 1.90356075133519 1491.84338378906 1080.83660888672 NIF3 --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 1008.90051269531 1323.03088378906 1660.65588378906 1152.77270507813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL221C /GEN=NIF3 /DB_XREF=GI:6321217 /SEG=NC_001139:-81424,82290 /DEF=similar to Listeria monocytogenes major sigma factor (rpoD gene product) /NOTE=Nif3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003189 // NIF3 SGDID:S0003189, Chr VII from 82291-81425, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019184 // cdna:Genscan chromosome:SGD1:VII:81425:82291:-1 // ensembl // 11 // --- /// GENEFINDER00000021582 // cdna:GeneFinder chromosome:SGD1:VII:81425:82291:-1 // ensembl // 11 // --- /// YGL221C // cdna:known chromosome:SGD1:VII:81425:82291:-1 gene:YGL221C // ensembl // 11 // --- U52042 // gb // 10 // Negative Strand Matching Probes No cerevisiae_gene 1.90356075133519 1.31135911533491 1.06455942125465 1.64600559013749 1.14260295298934 Max fold change below threshold 4 1.90356075133519 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773268_at YPL118W.S1 Mitochondrial ribosomal protein of the large subunit; MRP51 exhibits genetic interactions with mutations in the COX2 and COX3 mRNA 5'-untranslated leader sequences 1.90307463958512 1147.87237548828 1943.09515380859 MRP51 6412 // protein biosynthesis // inferred from direct assay /// 6413 // translational initiation // inferred from mutant phenotype 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // inferred from direct assay 1967.0673828125 1033.6259765625 1262.11877441406 1919.12292480469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL118W /GEN=MRP51 /DB_XREF=GI:6325139 /SEG=NC_001148:+326627,327661 /DEF=Mitochondrial ribosomal protein of the large subunit; MRP51 exhibits genetic interactions with mutations in the COX2 and COX3 mRNA 5'-untranslated leader sequences /NOTE=Mrp51p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 11278769]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 11278769]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 11278769]; go_process: translational initiation [goid GO:0006413] [evidence IMP] [pmid 9528754] --- --- --- --- --- --- S0006039 // MRP51 SGDID:S0006039, Chr XVI from 326627-327661, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020742 // cdna:GeneFinder chromosome:SGD1:XVI:326627:327661:1 // ensembl // 11 // --- /// YPL118W // cdna:known chromosome:SGD1:XVI:326627:327661:1 gene:YPL118W // ensembl // 11 // --- --- No cerevisiae_gene -1.18719380292258 -1.90307463958512 1.05976834367865 -1.55854379372948 -1.02498248412758 Max fold change below threshold 4 1.90307463958512 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769995_at SPCC330.05c.S1 --- 1.902616133763 --- --- --- --- 2.89719605445862 1.87863290309906 1.87386798858643 4.36634826660156 0.533936023712158 0.567627012729645 0.5 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC330.05c /GEN=ura4 /DEF=orotidine 5-phosphate decarboxylase activity (PMID 2834100) --- --- --- --- --- --- SPCC330.05c // |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.75563377493911 -1.54218317462624 -1.902616133763 -1.54610467338425 1.50709450949376 Max fold change below threshold 2 1.902616133763 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772371_at YJL048C.S1 UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p, transcription is repressed when cells are grown in media containing inositol and choline 1.90250494646894 5273.50317382813 4236.59545898438 UBX6 6511 // ubiquitin-dependent protein catabolism // inferred from mutant phenotype /// 30435 // sporulation // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 4542.69921875 6229.93212890625 4317.07421875 3930.49169921875 0.014160200022161 0.0107421996071935 0.014160200022161 0.014160200022161 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL048C /GEN=MTR4 /DB_XREF=GI:6322413 /SEG=NC_001142:-347363,348553 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery /NOTE=Yjl048cp --- --- --- --- --- --- S0003584 // UBX6 SGDID:S0003584, Chr X from 348553-347363, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000024105 // cdna:Genscan chromosome:SGD1:X:347363:348553:-1 // ensembl // 10 // --- /// GENEFINDER00000024321 // cdna:GeneFinder chromosome:SGD1:X:347363:348553:-1 // ensembl // 10 // --- /// YJL048C // cdna:known chromosome:SGD1:X:347363:348553:-1 gene:YJL048C // ensembl // 10 // --- --- No cerevisiae_gene -1.90250494646894 1.3714163823993 -1.1261985559617 -1.05226340539156 -1.15575850717429 Max fold change below threshold 4 1.90250494646894 Max fold change below threshold PPPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1776699_at YHR205W.S1 Protein kinase that regulates signal transduction activity and G1 progression, controls cAPK activity, required for nitrogen activation of the FGM pathway, involved in life span regulation, homologous to mammalian Akt/PKB 1.90238668345029 906.16552734375 1339.34844970703 SCH9 1302 // replicative cell aging // inferred from mutant phenotype /// 1324 // age-dependent response to oxidative stress during chronological cell aging // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from genetic interaction /// 6468 // protein amino acid phosphorylation // inferred from sequence similarity /// 8361 // regulation of cell size // inferred from direct assay 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4674 // protein serine/threonine kinase activity // inferred from genetic interaction /// 4674 // protein serine/threonine kinase activity // inferred from sequence similarity 1286.23168945313 710.691650390625 1101.63940429688 1392.46520996094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR205W /GEN=SCH9 /DB_XREF=GI:6321999 /SEG=NC_001140:+509361,511835 /DEF=protein kinase involved in growth control, may be redundant with cAMP pathway /NOTE=Sch9p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence IGI,ISS] [pmid 3290050]; go_process: age-dependent response to oxidative stress during chronological cell aging [goid GO:0001324] [evidence IMP] [pmid 11292860]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IGI,ISS] [pmid 3290050]; go_process: regulation of cell size [goid GO:0008361] [evidence IDA] [pmid 12089449] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 7.0E-80 /// hanks // 1.5.1 // AGC group; AGC V Budding yeast AGC-related; SCH9 // 1.0E-155 --- --- S0001248 // SCH9 SGDID:S0001248, Chr VIII from 509362-511836, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020154 // cdna:GeneFinder chromosome:SGD1:VIII:509362:511836:1 // ensembl // 11 // --- /// GENSCAN00000016727 // cdna:Genscan chromosome:SGD1:VIII:510424:511836:1 // ensembl // 11 // --- /// YHR205W // cdna:known chromosome:SGD1:VIII:509362:511836:1 gene:YHR205W // ensembl // 11 // --- --- No cerevisiae_gene -1.90238668345029 -1.80983087214569 1.03158489144248 -1.16756144019201 1.08259283407407 Max fold change below threshold 4 1.90238668345029 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778961_at YIL026C.S1 Subunit of the cohesin complex, which is required for sister chromatid cohesion during mitosis and meiosis and interacts with centromeres and chromosome arms, essential for viability 1.90206410301755 238.367713928223 143.584060668945 IRR1 755 // cytogamy // inferred from mutant phenotype /// 7064 // mitotic sister chromatid cohesion // inferred from mutant phenotype /// 9847 // spore germination // inferred from mutant phenotype 798 // nuclear cohesin complex // inferred from physical interaction /// 798 // nuclear cohesin complex // inferred from direct assay 5515 // protein binding // inferred from direct assay 133.308883666992 252.959503173828 223.775924682617 153.859237670898 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL026C /GEN=IRR1 /DB_XREF=GI:6322163 /SEG=NC_001141:-304475,307927 /DEF=Subunit of the cohesin complex, which is required for sister chromatid cohesion during mitosis and meiosis and interacts with centromeres and chromosome arms, essential for viability /NOTE=Irr1p; go_component: nuclear cohesin complex [goid GO:0000798] [evidence IDA,IPI] [pmid 9990856]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 11983169]; go_process: cytogamy [goid GO:0000755] [evidence IMP] [pmid 10028182]; go_process: germination (sensu Saccharomyces) [goid GO:0007153] [evidence IMP] [pmid 10028182]; go_process: mitotic sister chromatid cohesion [goid GO:0007064] [evidence IMP] [pmid 9990856] --- --- --- --- --- --- S0001288 // IRR1 SGDID:S0001288, Chr IX from 307927-304475, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016455 // cdna:Genscan chromosome:SGD1:IX:304475:307927:-1 // ensembl // 11 // --- /// GENEFINDER00000019087 // cdna:GeneFinder chromosome:SGD1:IX:304475:307927:-1 // ensembl // 11 // --- /// YIL026C // cdna:known chromosome:SGD1:IX:304475:307927:-1 gene:YIL026C // ensembl // 11 // --- --- No cerevisiae_gene 1.90206410301755 1.89754423122862 1.0426159994167 1.67862724919078 1.15415592298591 Max fold change below threshold 4 1.90206410301755 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774189_at SPCC24B10.09.S1 --- 1.90205233664653 --- --- --- --- 9.91841506958008 6.73610877990723 5.21458578109741 10.8219556808472 0.0461426004767418 0.219482004642487 0.129638999700546 0.00585938012227416 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC24B10.09 /GEN=rps1702 /DEF=40S ribosomal protein S17 --- --- --- --- --- --- SPCC24B10.09 // |rps1702|rps17-2, rps17|40S ribosomal protein S17|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.03358681201914 -1.47242501474519 -1.25216356510669 -1.90205233664653 1.09109727763242 Max fold change below threshold 4 1.90205233664653 Max fold change below threshold PPAPAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1779628_at YDR033W.S1 Protein that localizes primarily to the plasma membrane, also found at the nuclear envelope; has similarity to Hsp30p and Yro2p, which are induced during heat shock 1.90181836415218 3052.26159667969 5107.43481445313 MRH1 --- 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay --- 5722.650390625 3009.04150390625 3095.48168945313 4492.21923828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR033W /GEN=MRH1 /DB_XREF=GI:6320236 /SEG=NC_001136:+508142,509104 /DEF=Protein that localizes primarily to the plasma membrane, also found at the nuclear envelope; has similarity to Hsp30p and Yro2p, which are induced during heat shock /NOTE=Mrh1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 10675524]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002440 // span:35-54,69-91,112-134,139-161,168-190,203-225,238-260 // numtm:7 S0002440 // MRH1 SGDID:S0002440, Chr IV from 508143-509105, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023487 // cdna:GeneFinder chromosome:SGD1:IV:508143:509105:1 // ensembl // 11 // --- /// YDR033W // cdna:known chromosome:SGD1:IV:508143:509105:1 gene:YDR033W // ensembl // 11 // --- --- No cerevisiae_gene -1.26906844974576 -1.90181836415218 -1.17264774326112 -1.84871078712018 -1.27390273873065 Max fold change below threshold 4 1.90181836415218 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772377_at YPL121C.S1 Meiosis specific protein involved in DMC1-dependent meiotic recombination, forms heterodimer with Sae3p; proposed to be an assembly factor for Dmc1p 1.90145987923752 10.7756352424622 8.18050169944763 MEI5 707 // meiotic DNA recombinase assembly // inferred from mutant phenotype /// 7131 // meiotic recombination // inferred from mutant phenotype 794 // condensed nuclear chromosome // inferred from direct assay --- 8.83149337768555 16.7927303314209 4.75854015350342 7.52951002120972 0.053955078125 0.00195312988944352 0.0107421996071935 0.018554700538516 M P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL121C /GEN=MEI5 /DB_XREF=GI:6325136 /SEG=NC_001148:-320961,321629 /DEF=Meiotic protein required for synapsis and meiotic recombination /NOTE=Mei5p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 7.80000019073486 --- S0006042 // MEI5 SGDID:S0006042, Chr XVI from 321629-320961, reverse complement, Verified ORF // sgd // 11 // --- /// YPL121C // cdna:known chromosome:SGD1:XVI:320961:321629:-1 gene:YPL121C // ensembl // 11 // --- --- No cerevisiae_gene 1.24578640098172 1.90145987923752 -1.5898889806546 -1.85592494605377 -1.17291740801304 Max fold change below threshold 4 1.90145987923752 Max fold change below threshold MPPPPP No 3 0 MPPP 0 3 1 No No 2 < x = 3
1775832_at YHL015W.S1 Protein component of the small (40S) ribosomal subunit; overproduction suppresses mutations affecting RNA polymerase III-dependent transcription; has similarity to E. coli S10 and rat S20 ribosomal proteins 1.90128195537608 3193.20092773438 4771.17553710938 RPS20 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 5311.53564453125 3592.74169921875 2793.66015625 4230.8154296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL015W /GEN=RPS20 /DB_XREF=GI:6321772 /SEG=NC_001140:+75408,75773 /DEF=Protein component of the small (40S) ribosomal subunit; overproduction suppresses mutations affecting RNA polymerase III-dependent transcription; has similarity to E. coli S10 and rat S20 ribosomal proteins /NOTE=Rps20p; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0001007 // RPS20 SGDID:S0001007, Chr VIII from 75408-75773, Verified ORF // sgd // 11 // --- /// GENSCAN00000016541 // cdna:Genscan chromosome:SGD1:VIII:75408:75773:1 // ensembl // 11 // --- /// GENEFINDER00000020107 // cdna:GeneFinder chromosome:SGD1:VIII:75408:75773:1 // ensembl // 11 // --- /// YHL015W // cdna:known chromosome:SGD1:VIII:75408:75773:1 gene:YHL015W // ensembl // 11 // --- --- No cerevisiae_gene 1.1001420754227 -1.47840732488123 -1.45499364428189 -1.90128195537608 -1.25544017053081 Max fold change below threshold 4 1.90128195537608 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775877_at YOL042W.S1 Putative endonuclease, has a domain similar to a magnesium-dependent endonuclease motif in mRNA deadenylase Ccr4p 1.90103801198504 310.532867431641 213.94849395752 NGL1 --- 5739 // mitochondrion // inferred from direct assay 4519 // endonuclease activity // inferred from sequence similarity 182.857864379883 273.445983886719 347.619750976563 245.039123535156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL042W /GEN=NGL1 /DB_XREF=GI:6324531 /SEG=NC_001147:+249823,250914 /DEF=DNase/RNase (putative); CCR4 C-terminal homolog, homology to drosophila Angel gene /NOTE=Ngl1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: endonuclease activity [goid GO:0004519] [evidence ISS] [pmid 12358428]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005402 // NGL1 SGDID:S0005402, Chr XV from 249823-250914, Verified ORF // sgd // 11 // --- /// GENSCAN00000017434 // cdna:Genscan chromosome:SGD1:XV:249823:250914:1 // ensembl // 11 // --- /// GENEFINDER00000022897 // cdna:GeneFinder chromosome:SGD1:XV:249922:250914:1 // ensembl // 11 // --- /// YOL042W // cdna:known chromosome:SGD1:XV:249823:250914:1 gene:YOL042W // ensembl // 11 // --- --- No cerevisiae_gene 1.33696599560088 1.49540182378288 1.75877196605777 1.90103801198504 1.34005241921722 Max fold change below threshold 4 1.90103801198504 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776752_at YLR361C.S1 Protein involved in cell cycle regulation 1.90063404111346 302.172225952148 207.346885681152 --- --- --- --- 208.088470458984 208.844421386719 395.500030517578 206.60530090332 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR361C /GEN=VPS38 /DB_XREF=GI:6323393 /SEG=NC_001144:-847387,849123 /DEF=Protein involved in cell cycle regulation /NOTE=Ylr361cp --- --- --- --- --- S0004353 // span:7-29 // numtm:1 S0004353 // DCR2 SGDID:S0004353, Chr XII from 849123-847387, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018094 // cdna:Genscan chromosome:SGD1:XII:847387:849123:-1 // ensembl // 11 // --- /// GENEFINDER00000024604 // cdna:GeneFinder chromosome:SGD1:XII:847387:848628:-1 // ensembl // 11 // --- /// YLR361C // cdna:known chromosome:SGD1:XII:847387:849123:-1 gene:YLR361C // ensembl // 11 // --- S0004352 // sgd // 1 // Negative Strand Matching Probes /// YLR360W // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene 1.55476507569028 1.00363283427509 1.59798584557074 1.90063404111346 -1.00717875847899 Max fold change below threshold 4 1.90063404111346 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773441_at SPBC29A3.01.S1 --- 1.89993089571456 --- --- --- --- 8.67489147186279 6.2704815864563 11.6477108001709 4.56589841842651 0.111571997404099 0.303710997104645 0.171387001872063 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A3.01 /DEF=heavy metal ATPase (PMID 12707717) --- --- --- --- --- --- SPBC29A3.01 // |||heavy metal ATPase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.56054118694371 -1.38344899865424 1.01788752614667 1.34269239424499 -1.89993089571456 Max fold change below threshold 4 1.89993089571456 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777128_at YGR153W.S1 Hypothetical protein 1.89969761762168 73.5677661895752 49.3108291625977 --- --- --- --- 45.7588500976563 60.2075538635254 86.927978515625 52.8628082275391 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR153W /GEN=RSR1 /DB_XREF=GI:6321592 /SEG=NC_001139:+796095,796748 /DEF=Hypothetical ORF /NOTE=Ygr153wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003385 // YGR153W SGDID:S0003385, Chr VII from 796097-796750, Uncharacterized ORF // sgd // 11 // --- /// YGR153W // cdna:known chromosome:SGD1:VII:796097:796750:1 gene:YGR153W // ensembl // 11 // --- --- No cerevisiae_gene 1.23288511737158 1.31575757990058 1.56711484928233 1.89969761762168 1.15524774146907 Max fold change below threshold 4 1.89969761762168 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772468_at YKR094C.S1 Fusion protein, identical to Rpl40Ap, that is cleaved to yield ubiquitin and a ribosomal protein of the large (60S) ribosomal subunit with similarity to rat L40; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes /// Fusion protein, identical to Rpl40Bp, that is cleaved to yield ubiquitin and a ribosomal protein of the large (60S) ribosomal subunit with similarity to rat L40; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes 1.89966237142153 1436.63366699219 2408.03356933594 RPL40B /// RPL40A 6412 // protein biosynthesis // traceable author statement /// 16567 // protein ubiquitination // inferred from mutant phenotype /// 42254 // ribosome biogenesis and assembly // inferred from direct assay 5739 // mitochondrion // inferred from direct assay /// 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement /// 31386 // protein tag // inferred from sequence similarity 2527.79760742188 1404.94519042969 1468.32214355469 2288.26953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR094C /GEN=RPL40B /DB_XREF=GI:6322947 /SEG=NC_001143:-617636,618390 /DEF=Fusion protein, identical to Rpl40Ap, that is cleaved to yield ubiquitin and a ribosomal protein of the large (60S) ribosomal subunit with similarity to rat L40; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes /NOTE=Rpl40bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: ribosomal chaperone activity [goid GO:0000005] [evidence IDA] [pmid 2538753]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence NAS] [pmid 3038523] --- --- --- --- --- --- S0001802 // RPL40B SGDID:S0001802, Chr XI from 618392-618385,618016-617638, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YKR094C // cdna:known chromosome:SGD1:XI:617638:618392:-1 gene:YKR094C // ensembl // 11 // --- --- No cerevisiae_gene 1.35691986920046 -1.79921439259049 -1.89966237142153 -1.72155519040412 -1.10467651336555 Max fold change below threshold 4 1.89966237142153 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776159_at YLR097C.S1 Putative nuclear ubiquitin ligase, based on computational analysis of large-scale protein-protein interaction data; has similarity to F-box proteins; identified in association with Cdc53p, Skp1p and Ubi4 in large-scale studies 1.89827622096004 390.130126953125 558.592864990234 HRT3 6511 // ubiquitin-dependent protein catabolism // RCA 152 // nuclear ubiquitin ligase complex // RCA 4842 // ubiquitin-protein ligase activity // RCA 534.621215820313 389.800323486328 390.459930419922 582.564514160156 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR097C /GEN=HRT3 /DB_XREF=GI:6323126 /SEG=NC_001144:-336232,337266 /DEF=Hrt3p /NOTE=go_component: nuclear ubiquitin ligase complex [goid GO:0000152] [evidence TAS] [pmid 14566057]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 14566057]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0004087 // HRT3 SGDID:S0004087, Chr XII from 337266-336232, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000024741 // cdna:GeneFinder chromosome:SGD1:XII:336232:337266:-1 // ensembl // 11 // --- /// YLR097C // cdna:known chromosome:SGD1:XII:336232:337266:-1 gene:YLR097C // ensembl // 11 // --- --- No cerevisiae_gene -1.89827622096004 -1.37152583927772 1.10438755261019 -1.36920891023402 1.0896771338681 Max fold change below threshold 4 1.89827622096004 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770288_at YBR240C.S1 Zinc finger protein of the Zn(II)2Cys6 type, probable transcriptional activator of thiamine biosynthetic genes 1.89812950443163 119.494243621826 201.075775146484 THI2 9228 // thiamin biosynthesis // traceable author statement /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence similarity 5634 // nucleus // inferred from curator 16563 // transcriptional activator activity // inferred from mutant phenotype /// 16563 // transcriptional activator activity // inferred from sequence similarity 186.859649658203 98.4440994262695 140.544387817383 215.291900634766 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR240C /GEN=THI2 /DB_XREF=GI:6319717 /SEG=NC_001134:-700447,701799 /DEF=Transcriptional activator of thiamine biosynthetic genes /NOTE=Thi2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: transcriptional activator activity [goid GO:0016563] [evidence IMP] [pmid 8394343]; go_process: thiamin biosynthesis [goid GO:0009228] [evidence TAS] [pmid 9655908] --- --- --- --- --- --- S0000444 // THI2 SGDID:S0000444, Chr II from 701837-700485, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000021331 // cdna:Genscan chromosome:SGD1:II:700485:701837:-1 // ensembl // 10 // --- /// GENEFINDER00000022326 // cdna:GeneFinder chromosome:SGD1:II:700485:701528:-1 // ensembl // 10 // --- /// YBR240C // cdna:known chromosome:SGD1:II:700485:701837:-1 gene:YBR240C // ensembl // 10 // --- --- No cerevisiae_gene -1.37825808964685 -1.89812950443163 1.14681692048217 -1.32954188039867 1.15215832325796 Max fold change below threshold 4 1.89812950443163 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773501_at YOL081W.S1 GTPase-activating protein that negatively regulates RAS by converting it from the GTP- to the GDP-bound inactive form, required for reducing cAMP levels under nutrient limiting conditions, has similarity to Ira1p and human neurofibromin 1.8980305123168 3848.07836914063 2548.94763183594 IRA2 7265 // Ras protein signal transduction // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 5099 // Ras GTPase activator activity // inferred from direct assay 2572.74560546875 4255.1630859375 3440.99365234375 2525.14965820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL081W /GEN=IRA2 /DB_XREF=GI:6324491 /SEG=NC_001147:+171069,180308 /DEF=GTPase-activating protein that negatively regulates RAS by converting it from the GTP- to the GDP-bound inactive form, required for reducing cAMP levels under nutrient limiting conditions, has similarity to Ira1p and human neurofibromin /NOTE=Ira2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: Ras GTPase activator activity [goid GO:0005099] [evidence IDA] [pmid 7577970]; go_process: RAS protein signal transduction [goid GO:0007265] [evidence IMP] [pmid 2164637] --- --- --- --- --- --- S0005441 // IRA2 SGDID:S0005441, Chr XV from 171069-180308, Verified ORF // sgd // 11 // --- /// GENSCAN00000017402 // cdna:Genscan chromosome:SGD1:XV:171069:180308:1 // ensembl // 11 // --- /// GENEFINDER00000022654 // cdna:GeneFinder chromosome:SGD1:XV:171069:180308:1 // ensembl // 11 // --- /// YOL081W // cdna:known chromosome:SGD1:XV:171069:180308:1 gene:YOL081W // ensembl // 11 // --- --- No cerevisiae_gene -1.8980305123168 1.65393853045265 -1.00145267175282 1.33747916818103 -1.01884876292817 Max fold change below threshold 4 1.8980305123168 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773894_at YLL019C.S1 Nonessential putative protein kinase of unknown cellular role; member of the LAMMER family of protein kinases, which are serine/threonine kinases also capable of phosphorylating tyrosine residues 1.89785109019101 3016.96423339844 1699.44982910156 KNS1 6468 // protein amino acid phosphorylation // inferred from direct assay --- 4674 // protein serine/threonine kinase activity // inferred from direct assay /// 4674 // protein serine/threonine kinase activity // inferred from mutant phenotype /// 4713 // protein-tyrosine kinase activity // inferred from direct assay /// 4713 // protein-tyrosine kinase activity // inferred from mutant phenotype 1803.47863769531 3284.33422851563 2749.59423828125 1595.42102050781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL019C /GEN=KNS1 /DB_XREF=GI:6323009 /SEG=NC_001144:-105685,107898 /DEF=protein kinase homolog /NOTE=Kns1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence IDA,IMP] [pmid 8910305]; go_function: protein-tyrosine kinase activity [goid GO:0004713] [evidence IDA,IMP] [pmid 8910305]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 8910305] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-48 /// hanks // 1.1.15 // AGC group; AGC I Cyclic nucleotide regulated protein kinase (PKA & PKG); PKG-I // 4.0E-46 --- --- S0003942 // KNS1 SGDID:S0003942, Chr XII from 107898-105685, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017712 // cdna:Genscan chromosome:SGD1:XII:105685:107850:-1 // ensembl // 11 // --- /// GENEFINDER00000024868 // cdna:GeneFinder chromosome:SGD1:XII:105685:107850:-1 // ensembl // 11 // --- /// YLL019C // cdna:known chromosome:SGD1:XII:105685:107898:-1 gene:YLL019C // ensembl // 11 // --- YLL020C // ensembl // 2 // Cross Hyb Matching Probes No cerevisiae_gene -1.89785109019101 1.82111069123209 1.13706604200582 1.52460593699906 -1.13040922396853 Max fold change below threshold 4 1.89785109019101 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778413_s_at SPAC8C9.08.S1 --- 1.89779472296945 --- --- --- --- 5.55820655822754 7.01046419143677 8.64975643157959 10.5483350753784 0.432372987270355 0.5 0.398925989866257 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8C9.08 /GEN=rps5 /DEF=40S ribosomal protein S5 --- --- --- --- --- --- SPAC8C9.08 // |rps5||40S ribosomal protein S5|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPAC328.10c // |rps502|rps5-2|40S ribosomal protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.83373741227182 1.26128169545256 1.6654239163296 1.55621356294789 1.89779472296945 Max fold change below threshold 4 1.89779472296945 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778029_at YBR222C.S1 Peroxisomal AMP-binding protein, localizes to both the peroxisomal peripheral membrane and matrix, expression is highly inducible by oleic acid, similar to E. coli long chain acyl-CoA synthetase 1.89768396764008 1417.53430175781 2313.88952636719 PCS60 --- 5737 // cytoplasm // inferred from direct assay /// 5778 // peroxisomal membrane // inferred from direct assay /// 5782 // peroxisomal matrix // inferred from direct assay 16208 // AMP binding // inferred from sequence similarity 2364.076171875 1245.76916503906 1589.29943847656 2263.70288085938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR222C /GEN=PCS60 /DB_XREF=GI:6319699 /SEG=NC_001134:-666677,668308 /DEF=Probable AMP-binding protein /NOTE=Pcs60p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: peroxisomal matrix [goid GO:0005782] [evidence IDA] [pmid 8841414]; go_component: peroxisomal membrane [goid GO:0005778] [evidence IDA] [pmid 8841414]; go_function: AMP binding [goid GO:0016208] [evidence ISS] [pmid 8841414]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- ec // AC2L_HUMAN // (Q9NUB1) Acetyl-coenzyme A synthetase 2-like, mitochondrial precursor (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acetyl-CoA synthetase 2) // 0.0 --- --- S0000426 // PCS60 SGDID:S0000426, Chr II from 668346-666715, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021317 // cdna:Genscan chromosome:SGD1:II:666715:668346:-1 // ensembl // 11 // --- /// GENEFINDER00000022255 // cdna:GeneFinder chromosome:SGD1:II:666715:668346:-1 // ensembl // 11 // --- /// YBR222C // cdna:known chromosome:SGD1:II:666715:668346:-1 gene:YBR222C // ensembl // 11 // --- --- No cerevisiae_gene -1.41884083782805 -1.89768396764008 -1.10371978956132 -1.48749575733891 -1.04434031155958 Max fold change below threshold 4 1.89768396764008 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775395_at YFR013W.S1 Member of a complex (Isw1a) with Isw1p that has nucleosome-stimulated ATPase activity and represses transcription initiation by specific positioning of a promoter proximal dinucleosome; has homology to Esc8p, which is involved in silencing 1.89756831819996 188.670616149902 373.441116333008 IOC3 6338 // chromatin remodeling // inferred from physical interaction 16587 // ISW1 complex // inferred from physical interaction 5515 // protein binding // inferred from direct assay 345.285858154297 181.962280273438 195.378952026367 401.596374511719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR013W /GEN=IOC3 /DB_XREF=GI:14318535 /SEG=NC_001138:+169914,172277 /DEF=Member of a complex (Isw1a) with Isw1p that has nucleosome-stimulated ATPase activity and represses transcription initiation by specific positioning of a promoter proximal dinucleosome; has homology to Esc8p, which is involved in silencing /NOTE=Ioc3p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 12482963]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 12482963]; go_process: chromatin remodeling [goid GO:0006338] [evidence IPI] [pmid 11805826] --- --- --- --- --- --- S0001909 // IOC3 SGDID:S0001909, Chr VI from 169914-172277, Verified ORF // sgd // 11 // --- /// GENSCAN00000023254 // cdna:Genscan chromosome:SGD1:VI:169914:172277:1 // ensembl // 11 // --- /// GENEFINDER00000018533 // cdna:GeneFinder chromosome:SGD1:VI:171600:172277:1 // ensembl // 11 // --- /// YFR013W // cdna:known chromosome:SGD1:VI:169914:172277:1 gene:YFR013W // ensembl // 11 // --- --- No cerevisiae_gene -1.88696027057768 -1.89756831819996 1.01834125883051 -1.76726231036237 1.16308376096961 Max fold change below threshold 4 1.89756831819996 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777955_at YGR118W.S1 Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit, required for translational accuracy; nearly identical to Rps23Ap and similar to E. coli S12 and rat S23 ribosomal proteins; deletion of both RPS23A and RPS23B is lethal /// Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit, required for translational accuracy; nearly identical to Rps23Bp and similar to E. coli S12 and rat S23 ribosomal proteins; deletion of both RPS23A and RPS23B is lethal 1.8973241749187 1379.05114746094 2377.857421875 RPS23B /// RPS23A 6412 // protein biosynthesis // traceable author statement /// 6450 // regulation of translational fidelity // inferred from mutant phenotype 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 2415.90673828125 1273.32312011719 1484.77917480469 2339.80810546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR118W /GEN=RPS23A /DB_XREF=GI:6321556 /SEG=NC_001139:+726976,727733 /DEF=Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit, required for translational accuracy; nearly identical to Rps23Bp and similar to E. coli S12 and rat S23 ribosomal proteins; deletion of both RPS23A and RPS23B is lethal /NOTE=Rps23ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: regulation of translational fidelity [goid GO:0006450] [evidence IMP] [pmid 8950190] --- --- --- --- --- --- S0003350 // RPS23A SGDID:S0003350, Chr VII from 726978-727042,727363-727735, intron sequence removed, Verified ORF // sgd // 10 // --- /// GENEFINDER00000021739 // cdna:GeneFinder chromosome:SGD1:VII:726978:727735:1 // ensembl // 10 // --- /// YGR118W // cdna:known chromosome:SGD1:VII:726978:727735:1 gene:YGR118W // ensembl // 10 // --- --- No cerevisiae_gene 1.20629234098465 -1.8973241749187 -1.11179828894891 -1.62711518269984 -1.0325234503781 Max fold change below threshold 4 1.8973241749187 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779261_at SPCC18.15.S1 --- 1.89724785295446 --- --- --- --- 9.85560131072998 7.47549343109131 13.2954177856445 5.19468307495117 0.0375977009534836 0.303710997104645 0.366210997104645 0.398925989866257 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC18.15 /DEF=WD repeat protein --- --- --- --- --- --- SPCC18.15 // |||WD repeat protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.82241277557256 -1.31838806382192 1.34871608239979 1.34902147179691 -1.89724785295446 Max fold change below threshold 4 1.89724785295446 Max fold change below threshold PPAPAA No 4 0 PAAA 3 1 0 No No x = 1
1773820_x_at YDL061C.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps29Bp and has similarity to rat S29 and E. coli S14 ribosomal proteins /// Protein component of the small (40S) ribosomal subunit; nearly identical to Rps29Ap and has similarity to rat S29 and E. coli S14 ribosomal proteins 1.89715645087141 3972.89868164063 5249.81469726563 RPS29A /// RPS29B 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 6381.49609375 4582.0810546875 3363.71630859375 4118.13330078125 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL061C /GEN=RPS29B /DB_XREF=GI:6320142 /SEG=NC_001136:-340628,340798 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps29Ap and has similarity to rat S29 and E. coli S14 ribosomal proteins /NOTE=Rps29bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0002219 // RPS29B SGDID:S0002219, Chr IV from 340798-340628, reverse complement, Verified ORF // sgd // 11 // --- /// YDL061C // cdna:known chromosome:SGD1:IV:340628:340798:-1 gene:YDL061C // ensembl // 11 // --- --- No cerevisiae_gene -1.16171787312352 -1.39270694201747 -1.41503358907791 -1.89715645087141 -1.54960891929831 Max fold change below threshold 4 1.89715645087141 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772142_at YGR026W.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery 1.89709713879409 1437.60766601563 2308.52197265625 --- --- --- --- 2337.17944335938 1231.97668457031 1643.23864746094 2279.86450195313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR026W /GEN=THG1 /DB_XREF=GI:6321463 /SEG=NC_001139:+532987,533823 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery /NOTE=Ygr026wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003258 // span:31-53,136-158,182-204,219-241 // numtm:4 S0003258 // YGR026W SGDID:S0003258, Chr VII from 532989-533825, Uncharacterized ORF // sgd // 11 // --- /// YGR026W // cdna:known chromosome:SGD1:VII:532989:533825:1 gene:YGR026W // ensembl // 11 // --- --- No cerevisiae_gene -1.05970643752803 -1.89709713879409 1.08317818484257 -1.42230067858414 -1.02513962621776 Max fold change below threshold 4 1.89709713879409 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769734_s_at SPAC186.03.S1 --- 1.8968648669531 --- --- --- --- 10.6762886047363 11.7964124679565 13.6269617080688 6.77020311355591 0.149657994508743 0.296142578125 0.0952147990465164 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC186.03 /DEF=L-asparaginase --- --- --- --- --- --- SPAC186.03 // |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- /// SPBPB21E7.09 // ||SPAPB21E7.09|L-asparaginase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.8968648669531 1.10491697112078 1.71043367962197 1.27637629634923 -1.57695248217285 Max fold change below threshold 4 1.8968648669531 Max fold change below threshold APAPAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-r2-Sc-SPT15-5_at AFFX-r2-Sc-SPT15-5 TATA-binding protein, general transcription factor that interacts with other factors to form the preinitiation complex at promoters, essential for viability 1.89658741007558 533.96858215332 547.299133300781 SPT15 6360 // transcription from RNA polymerase I promoter // traceable author statement /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 6384 // transcription initiation from RNA polymerase III promoter // traceable author statement 120 // RNA polymerase I transcription factor complex // traceable author statement /// 126 // transcription factor TFIIIB complex // traceable author statement /// 5634 // nucleus // inferred from direct assay /// 5669 // transcription factor TFIID complex // traceable author statement /// 5669 // transcription factor TFIID complex // inferred from direct assay 3677 // DNA binding // inferred from physical interaction /// 3677 // DNA binding // traceable author statement /// 3701 // RNA polymerase I transcription factor activity // traceable author statement /// 3709 // RNA polymerase III transcription factor activity // traceable author statement /// 16251 // general RNA polymerase II transcription factor activity // traceable author statement 537.637145996094 418.245819091797 649.691345214844 556.961120605469 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=SPT15 SGD:YER148W TATA-binding protein tfIId general transcription factor (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- S0000950 // SPT15 SGDID:S0000950, Chr V from 465298-466020, Verified ORF // sgd // 10 // --- /// GENSCAN00000016927 // cdna:Genscan chromosome:SGD1:V:465298:466020:1 // ensembl // 10 // --- /// GENEFINDER00000019595 // cdna:GeneFinder chromosome:SGD1:V:465298:466020:1 // ensembl // 10 // --- /// YER148W // cdna:known chromosome:SGD1:V:465298:466020:1 gene:YER148W // ensembl // 10 // --- YER147C-A // ensembl // 10 // Negative Strand Matching Probes AFFX_control cerevisiae_gene 1.89658741007558 -1.28545731111802 -1.08946297798563 1.20841974936673 1.03594240977076 Max fold change below threshold 4 1.89658741007558 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778057_at YHR115C.S1 Protein involved in regulating spindle position and orientation, functionally redundant with Dma2p; homolog of S. pombe Dma1 and H. sapiens Chfr 1.89637268766845 465.07991027832 736.39990234375 DMA1 132 // establishment of mitotic spindle orientation // inferred from genetic interaction /// 921 // septin ring assembly // inferred from genetic interaction /// 7094 // mitotic spindle checkpoint // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay --- 696.615966796875 367.341278076172 562.818542480469 776.183837890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR115C /GEN=BZZ1 /DB_XREF=GI:6321907 /SEG=NC_001140:-340111,341361 /DEF=Homologue of S. pombe DMA1 /NOTE=Yhr115cp --- --- --- --- --- --- S0001157 // DMA1 SGDID:S0001157, Chr VIII from 341361-340111, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016652 // cdna:Genscan chromosome:SGD1:VIII:340111:341361:-1 // ensembl // 11 // --- /// GENEFINDER00000020143 // cdna:GeneFinder chromosome:SGD1:VIII:340111:341361:-1 // ensembl // 11 // --- /// YHR115C // cdna:known chromosome:SGD1:VIII:340111:341361:-1 gene:YHR115C // ensembl // 11 // --- --- No cerevisiae_gene -1.00577884007082 -1.89637268766845 -1.04352791951271 -1.23772746314777 1.11422056755261 Max fold change below threshold 4 1.89637268766845 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769740_at YDR118W.S1 Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition 1.89633364748563 86.6945304870605 175.383171081543 APC4 22 // mitotic spindle elongation // traceable author statement /// 70 // mitotic sister chromatid segregation // traceable author statement /// 7091 // mitotic metaphase/anaphase transition // traceable author statement /// 8054 // cyclin catabolism // traceable author statement /// 16567 // protein ubiquitination // inferred from physical interaction /// 31145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from physical interaction 5680 // anaphase-promoting complex // traceable author statement 4842 // ubiquitin-protein ligase activity // traceable author statement /// 5515 // protein binding // traceable author statement 163.030120849609 85.9712219238281 87.417839050293 187.736221313477 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR118W /GEN=APC4 /DB_XREF=GI:6320323 /SEG=NC_001136:+685876,687834 /DEF=subunit of the Anaphase Promoting Complex; all known APC subunits co-immunoprecipitate with epitope-tagged Apc4p /NOTE=Apc4p; go_component: anaphase-promoting complex [goid GO:0005680] [evidence TAS] [pmid 10465783]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 10465783]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 10465783]; go_process: cyclin catabolism [goid GO:0008054] [evidence TAS] [pmid 10465783]; go_process: mitotic metaphase/anaphase transition [goid GO:0007091] [evidence TAS] [pmid 10465783]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence TAS] [pmid 10465783]; go_process: mitotic spindle elongation [goid GO:0000022] [evidence TAS] [pmid 10465783]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10465783] --- --- --- --- --- --- S0002525 // APC4 SGDID:S0002525, Chr IV from 685877-687835, Verified ORF // sgd // 11 // --- /// GENSCAN00000025183 // cdna:Genscan chromosome:SGD1:IV:686585:687835:1 // ensembl // 11 // --- /// YDR118W // cdna:known chromosome:SGD1:IV:685877:687835:1 gene:YDR118W // ensembl // 11 // --- YDR118W-A // ensembl // 1 // Cross Hyb Matching Probes No cerevisiae_gene -1.12687174007095 -1.89633364748563 -1.17622783565704 -1.86495253852953 1.15154316475455 Max fold change below threshold 4 1.89633364748563 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773568_at YOR068C.S1 Protein involved in vacuole morphogenesis; acts at an early step of homotypic vacuole fusion that is required for vacuole tethering 1.89628308465948 20.9156351089478 29.8198404312134 VAM10 42144 // vacuole fusion, non-autophagic // inferred from mutant phenotype 5774 // vacuolar membrane // inferred from curator --- 29.4940185546875 19.110897064209 22.7203731536865 30.1456623077393 0.000244141003349796 0.00122069998178631 0.00415039015933871 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR068C /GEN=VAM10 /DB_XREF=GI:6324642 /SEG=NC_001147:-453870,454214 /DEF=[Abnormal]Vacuole Morphology /NOTE=Vam10p; go_component: vacuolar membrane [goid GO:0005774] [evidence IC] [pmid 12748377]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: vacuole fusion, non-autophagic [goid GO:0042144] [evidence IMP] [pmid 12748377] --- --- --- --- --- --- S0005594 // VAM10 SGDID:S0005594, Chr XV from 454214-453870, reverse complement, Verified ORF // sgd // 11 // --- /// YOR068C // cdna:known chromosome:SGD1:XV:453870:454214:-1 gene:YOR068C // ensembl // 11 // --- S0005595 // sgd // 11 // Negative Strand Matching Probes /// GENSCAN00000017511 // ensembl // 11 // Negative Strand Matching Probes /// GENEFINDER00000022866 // ensembl // 11 // Negative Strand Matching Probes /// YOR069W // ensembl // 11 // Negative Strand Matching Probes No cerevisiae_gene 1.37275792583242 -1.54330895381798 1.89628308465948 -1.29813090459308 1.0220940985659 Max fold change below threshold 4 1.89628308465948 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772578_at SPBC16C6.04.S1 --- 1.89560592847514 --- --- --- --- 10.6562671661377 17.1690902709961 18.8727931976318 5.62156248092651 0.0461426004767418 0.16552734375 0.0375977009534836 0.0676269978284836 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16C6.04 /DEF=sequence orphan --- --- --- --- --- --- SPBC16C6.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.36511026620057 1.61117303116744 -1.33447203505771 1.77105105412557 -1.89560592847514 Max fold change below threshold 4 1.89560592847514 Max fold change below threshold PMAAPA No 4 0 PAPA 2 2 0 No No 1 < x = 2
1779928_at YKR054C.S1 Cytoplasmic heavy chain dynein, microtubule motor protein, required for anaphase spindle elongation; involved in spindle assembly, chromosome movement, and spindle orientation during cell division, targeted to microtubule tips by Pac1p 1.89519265433739 286.581909179688 204.193130493164 DYN1 22 // mitotic spindle elongation // traceable author statement /// 70 // mitotic sister chromatid segregation // traceable author statement /// 132 // establishment of mitotic spindle orientation // inferred from mutant phenotype /// 132 // establishment of mitotic spindle orientation // inferred from genetic interaction /// 30473 // nuclear migration, microtubule-mediated // traceable author statement 5868 // cytoplasmic dynein complex // traceable author statement /// 5881 // cytoplasmic microtubule // traceable author statement /// 5881 // cytoplasmic microtubule // inferred from direct assay 3774 // motor activity // traceable author statement 186.739929199219 244.450256347656 328.713562011719 221.646331787109 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR054C /GEN=DYN1 /DB_XREF=GI:6322907 /SEG=NC_001143:-535289,547567 /DEF=Cytoplasmic heavy chain dynein, microtubule motor protein, required for anaphase spindle elongation; involved in spindle assembly, chromosome movement, and spindle orientation during cell division, targeted to microtubule tips by Pac1p /NOTE=Dyn1p; go_component: cytoplasmic microtubule [goid GO:0005881] [evidence IDA] [pmid 12566428]; go_component: cytoplasmic microtubule [goid GO:0005881] [evidence TAS] [pmid 9153752]; go_component: spindle pole body [goid GO:0005816] [evidence TAS] [pmid 9153752]; go_function: motor activity [goid GO:0003774] [evidence TAS] [pmid 9153752]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence TAS] [pmid 9153752]; go_process: mitotic spindle elongation [goid GO:0000022] [evidence TAS] [pmid 9153752]; go_process: mitotic spindle orientation (sensu Fungi) [goid GO:0030607] [evidence IGI,IMP] [pmid 9281582]; go_process: nuclear migration (sensu Saccharomyces) [goid GO:0000065] [evidence TAS] [pmid 9153752] --- --- --- --- scop // a.2.5.Prefoldin // All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin // 8.99999984540045E-4 /// scop // a.2.5.Prefoldin // All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin // 1.29999995231628 /// scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 1.0 --- S0001762 // DYN1 SGDID:S0001762, Chr XI from 547567-535289, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018463 // cdna:Genscan chromosome:SGD1:XI:535289:547567:-1 // ensembl // 11 // --- /// GENEFINDER00000023063 // cdna:GeneFinder chromosome:SGD1:XI:535289:545260:-1 // ensembl // 11 // --- /// YKR054C // cdna:known chromosome:SGD1:XI:535289:547567:-1 gene:YKR054C // ensembl // 11 // --- --- No cerevisiae_gene 1.89519265433739 1.30904117504977 1.45547347368744 1.76027464196497 1.18692522128276 Max fold change below threshold 4 1.89519265433739 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772155_at SPAC11D3.13.S1 --- 1.89513371105725 --- --- --- --- 11.6019086837769 6.12194728851318 12.1994781494141 8.49787616729736 0.219482004642487 0.398925989866257 0.296142578125 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11D3.13 /DEF=ThiJ domain --- --- --- --- --- --- SPAC11D3.13 // |||ThiJ domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.30044953253555 -1.89513371105725 -1.32743259414331 1.05150613419952 -1.36527156378494 Max fold change below threshold 4 1.89513371105725 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776324_at YER044C-A.S1 Functions in early recombination; mRNA is meiosis-specific and has 88 bp intron at 5' end spliced independently of MER1. 1.89366517456691 26.7359075546265 46.8824977874756 MEI4 7131 // meiotic recombination // traceable author statement /// 30437 // sporulation (sensu Fungi) // traceable author statement /// 42138 // meiotic DNA double-strand break formation // traceable author statement --- --- 42.8869934082031 30.8242034912109 22.647611618042 50.878002166748 0.000732421991415322 0.001220703125 0.014160200022161 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER044C-A /GEN=MEI4 /DB_XREF=GI:6320884 /SEG=NC_001137:-238459,239773 /DEF=Functions in early recombination /NOTE=Mei4p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiotic DNA double-strand break formation [goid GO:0042138] [evidence TAS] [pmid 9039264]; go_process: meiotic recombination [goid GO:0007131] [evidence TAS] [pmid 9039264]; go_process: sporulation (sensu Fungi) [goid GO:0030437] [evidence TAS] [pmid 8598049] --- --- --- --- --- --- S0001954 // MEI4 SGDID:S0001954, Chr V from 239773-239711,239622-238459, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// M84764 // S.cerevisiae meiosis-specific protein (MEI4) mRNA sequence. // gb // 10 // --- /// YER044C-A // cdna:known chromosome:SGD1:V:238459:239773:-1 gene:YER044C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.39077717831015 -1.39134149631577 1.33894329124805 -1.89366517456691 1.18632709181746 Max fold change below threshold 4 1.89366517456691 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1777049_at YMR080C.S1 ATP-dependent RNA helicase of the SFI superfamily, required for nonsense mediated mRNA decay and for efficient translation termination at nonsense codons 1.89356031385776 590.55143737793 933.109436035156 NAM7 184 // mRNA catabolism, nonsense-mediated decay // traceable author statement /// 6402 // mRNA catabolism // traceable author statement /// 6449 // regulation of translational termination // traceable author statement /// 6452 // translational frameshifting // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5844 // polysome // traceable author statement 3676 // nucleic acid binding // traceable author statement /// 4004 // ATP-dependent RNA helicase activity // traceable author statement /// 8186 // RNA-dependent ATPase activity // traceable author statement 893.303894042969 471.758880615234 709.343994140625 972.914978027344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR080C /GEN=NAM7 /DB_XREF=GI:6323726 /SEG=NC_001145:-426711,429626 /DEF=Component of the nonsense-mediated mRNA decay (NMD) pathway /NOTE=Nam7p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: polysome [goid GO:0005844] [evidence TAS] [pmid 10098411]; go_function: ATP-dependent helicase activity [goid GO:0008026] [evidence TAS] [pmid 10098411]; go_function: ATPase activity [goid GO:0016887] [evidence TAS] [pmid 10098411]; go_function: nucleic acid binding [goid GO:0003676] [evidence TAS] [pmid 10098411]; go_process: mRNA catabolism [goid GO:0006402] [evidence TAS] [pmid 9841679]; go_process: mRNA catabolism, nonsense-mediated [goid GO:0000184] [evidence TAS] [pmid 10098411]; go_process: regulation of translational termination [goid GO:0006449] [evidence TAS] [pmid 10098411] --- --- --- --- --- --- S0004685 // NAM7 SGDID:S0004685, Chr XIII from 429626-426711, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018778 // cdna:Genscan chromosome:SGD1:XIII:426711:429626:-1 // ensembl // 11 // --- /// GENEFINDER00000022037 // cdna:GeneFinder chromosome:SGD1:XIII:426711:429626:-1 // ensembl // 11 // --- /// YMR080C // cdna:known chromosome:SGD1:XIII:426711:429626:-1 gene:YMR080C // ensembl // 11 // --- --- No cerevisiae_gene -1.00230231295513 -1.89356031385776 1.13412787783128 -1.25933806646973 1.08911982195003 Max fold change below threshold 4 1.89356031385776 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779174_at SPAC56F8.07.S1 --- 1.89324699611223 --- --- --- --- 8.71360874176025 13.349946975708 7.50866508483887 4.60246801376343 0.194580003619194 0.014160200022161 0.129638999700546 0.219482004642487 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC56F8.07 /DEF=dubious --- --- --- --- --- --- SPAC56F8.07 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.19773180804259 1.53208014857587 -1.14643656162672 -1.16047375176639 -1.89324699611223 Max fold change below threshold 4 1.89324699611223 Max fold change below threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1770559_at YBR217W.S1 Protein that becomes conjugated to Atg5p by the E1 enzyme Atg7p, a step that is essential for autophagy 1.89320226885206 252.497718811035 397.264999389648 ATG12 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6914 // autophagy // inferred from mutant phenotype 5624 // membrane fraction // inferred from direct assay --- 348.618713378906 254.857620239258 250.137817382813 445.911285400391 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR217W /GEN=ATG12 /DB_XREF=GI:6319694 /SEG=NC_001134:+657789,658349 /DEF=Protein that becomes conjugated to Atg5p by the E1 enzyme Atg7p, a step that is essential for autophagy /NOTE=Atg12p; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 10233148]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: autophagy [goid GO:0006914] [evidence IMP] [pmid 9759731]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 9759731] --- --- --- --- --- --- S0000421 // ATG12 SGDID:S0000421, Chr II from 657827-658387, Verified ORF // sgd // 11 // --- /// YBR217W // cdna:known chromosome:SGD1:II:657827:658387:1 gene:YBR217W // ensembl // 11 // --- --- No cerevisiae_gene -1.89320226885206 -1.36789597678746 1.5415278524044 -1.39370654556155 1.27908017638669 Max fold change below threshold 4 1.89320226885206 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780001_at YEL042W.S1 Guanosine diphosphatase located in the Golgi, involved in the transport of GDP-mannose into the Golgi lumen by converting GDP to GMP after mannose is transferred its substrate 1.89300226852444 566.566009521484 1045.40167236328 GDA1 6486 // protein amino acid glycosylation // traceable author statement 5794 // Golgi apparatus // traceable author statement 4382 // guanosine-diphosphatase activity // inferred from direct assay /// 45134 // uridine-diphosphatase activity // inferred from direct assay 1035.03295898438 546.767944335938 586.364074707031 1055.77038574219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL042W /GEN=GDA1 /DB_XREF=GI:6320793 /SEG=NC_001137:+73771,75327 /DEF=Guanosine diphosphatase located in the Golgi, involved in the transport of GDP-mannose into the Golgi lumen by converting GDP to GMP after mannose is transferred its substrate /NOTE=Gda1p; go_component: Golgi apparatus [goid GO:0005794] [evidence TAS] [pmid 11425802]; go_function: guanosine-diphosphatase activity [goid GO:0004382] [evidence IDA] [pmid 7506254]; go_function: uridine diphosphatase activity [goid GO:0045134] [evidence IDA] [pmid 11425802]; go_process: protein amino acid glycosylation [goid GO:0006486] [evidence TAS] [pmid 11713596] --- --- --- --- --- S0000768 // span:7-24 // numtm:1 S0000768 // GDA1 SGDID:S0000768, Chr V from 73771-75327, Verified ORF // sgd // 11 // --- /// GENSCAN00000016768 // cdna:Genscan chromosome:SGD1:V:73771:75327:1 // ensembl // 11 // --- /// GENEFINDER00000019763 // cdna:GeneFinder chromosome:SGD1:V:73771:75327:1 // ensembl // 11 // --- /// YEL042W // cdna:known chromosome:SGD1:V:73771:75327:1 gene:YEL042W // ensembl // 11 // --- --- No cerevisiae_gene 1.1202105439445 -1.89300226852444 -1.24530385214838 -1.76517116861485 1.02003552309886 Max fold change below threshold 4 1.89300226852444 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769595_at SPAC12G12.05c.S1 --- 1.89297634246303 --- --- --- --- 7.46317768096924 10.5731916427612 14.1276187896729 4.51683759689331 0.0952147990465164 0.0952147990465164 0.0461426004767418 0.194580003619194 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12G12.05c /GEN=taf9 /DEF=transcription initiation factor activity --- --- --- --- --- --- SPAC12G12.05c // |taf9||transcription initiation factor activity|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.69997885265842 1.41671444721494 -1.07973079127715 1.89297634246303 -1.65230153196175 Max fold change below threshold 4 1.89297634246303 Max fold change below threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1779819_at YNL059C.S1 Nuclear actin-related protein involved in chromatin remodeling, component of chromatin-remodeling enzyme complexes 1.89281824809336 383.541656494141 678.871459960938 ARP5 6338 // chromatin remodeling // inferred from physical interaction /// 6338 // chromatin remodeling // inferred from mutant phenotype /// 6623 // protein-vacuolar targeting // inferred from mutant phenotype 5634 // nucleus // traceable author statement /// 5634 // nucleus // inferred from direct assay /// 31011 // INO80 complex // inferred from direct assay /// 31011 // INO80 complex // inferred from physical interaction /// 31011 // INO80 complex // inferred from mutant phenotype --- 656.538635253906 346.857727050781 420.2255859375 701.204284667969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL059C /GEN=ARP5 /DB_XREF=GI:6324269 /SEG=NC_001146:-512666,514933 /DEF=Actin-related protein. Part of the carboxypeptidase Y pathway. /NOTE=Arp5p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 10878579]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11011149]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 12134085] --- --- --- --- --- --- S0005004 // ARP5 SGDID:S0005004, Chr XIV from 514934-512667, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019986 // cdna:Genscan chromosome:SGD1:XIV:512667:513482:-1 // ensembl // 11 // --- /// GENEFINDER00000020416 // cdna:GeneFinder chromosome:SGD1:XIV:512667:514934:-1 // ensembl // 11 // --- /// YNL059C // cdna:known chromosome:SGD1:XIV:512667:514934:-1 gene:YNL059C // ensembl // 11 // --- --- No cerevisiae_gene -1.26109378989744 -1.89281824809336 -1.25947693332297 -1.56234807499692 1.06803201977107 Max fold change below threshold 4 1.89281824809336 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770275_at SPAC20G4.07c.S1 --- 1.89279570969376 --- --- --- --- 0.815344452857971 1.54328048229218 0.881361782550812 1.13492619991302 0.919434010982513 0.888427972793579 0.932372987270355 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC20G4.07c /GEN=sts1 /DEF=C-24(28) sterol reductase --- --- --- --- --- --- SPAC20G4.07c // |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.22523135473467 1.89279570969376 -1.76613099755045 1.08096863780876 1.39195918477748 Max fold change below threshold 0 1.89279570969376 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777046_at YLR439W.S1 Mitochondrial ribosomal protein of the large subunit 1.89230525086723 453.616516113281 732.063873291016 MRPL4 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 708.14892578125 374.225524902344 533.007507324219 755.978820800781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR439W /GEN=MRPL4 /DB_XREF=GI:6323472 /SEG=NC_001144:+1014487,1015446 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl4p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0004431 // MRPL4 SGDID:S0004431, Chr XII from 1014487-1015446, Verified ORF // sgd // 11 // --- /// YLR439W // cdna:known chromosome:SGD1:XII:1014487:1015446:1 gene:YLR439W // ensembl // 11 // --- GENSCAN00000018154 // ensembl // 8 // Cross Hyb Matching Probes /// GENEFINDER00000024607 // ensembl // 8 // Cross Hyb Matching Probes /// GENEFINDER00000024587 // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene 1.12157094206741 -1.89230525086723 1.07835576219636 -1.32859090359959 1.06754214160074 Max fold change below threshold 4 1.89230525086723 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775557_at YOL086W-A.S1 Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 1.89204247009002 656.865295410156 593.052856445313 --- --- --- --- 572.058532714844 644.096557617188 669.634033203125 614.047180175781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL086W-A /GEN=MPD2 /DB_XREF=GI:13129188 /SEG=NC_001147:+159172,159444 /DEF=Hypothetical ORF identified by homology. See FEBS Letters [2000] 487:31-36. /NOTE=Yol086w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007626 // YOL086W-A SGDID:S0007626, Chr XV from 159172-159444, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022548 // cdna:GeneFinder chromosome:SGD1:XV:159172:159444:1 // ensembl // 11 // --- /// YOL086W-A // cdna:known chromosome:SGD1:XV:159172:159444:1 gene:YOL086W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.89204247009002 1.12592771680281 1.24303142124704 1.17056908499418 1.07339921539439 Max fold change below threshold 4 1.89204247009002 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
RPTR-Sc-AY056050-1_at AFFX-Sc-AY056050-1 --- 1.8918850626002 --- --- --- --- 41.7280082702637 74.8379592895508 33.4407920837402 31.5599479675293 0.0461426004767418 0.0952147990465164 0.0676269978284836 0.219482004642487 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL AY056050 /FEA=CDS /DB_XREF=AAL31698.1 GI:17016300 /PROD=codon-optimized cre recombinase /NOTE=contains part of the large T nuclear localization signal sequence /GEN=iCre --- --- --- --- --- --- AFFX-Sc-AY056050-1 // --- // affx // --- // --- --- No No -1.8918850626002 1.7934706781316 1.0794313096372 -1.2478175805696 -1.32218241656152 Max fold change below threshold 4 1.8918850626002 Max fold change below threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1771829_at YGR253C.S1 Alpha subunit of the 20S proteasome involved in ubiquitin-dependent catabolism; human homolog is subunit zeta 1.89182773238577 3246.89184570313 1925.52490234375 PUP2 6511 // ubiquitin-dependent protein catabolism // traceable author statement /// 6950 // response to stress // traceable author statement /// 30437 // sporulation (sensu Fungi) // traceable author statement 19773 // proteasome core complex, alpha-subunit complex (sensu Eukaryota) // traceable author statement /// 19773 // proteasome core complex, alpha-subunit complex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement 1810.35607910156 3068.90185546875 3424.8818359375 2040.69372558594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR253C /GEN=PUP2 /DB_XREF=GI:6321692 /SEG=NC_001139:-998362,999144 /DEF=Proteasome subunit /NOTE=Pup2p; go_component: proteasome core complex (sensu Eukarya) [goid GO:0005839] [evidence TAS] [pmid 10872471]; go_component: proteasome core complex, alpha-subunit complex (sensu Eukarya) [goid GO:0019773] [evidence TAS] [pmid 10500111]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 10872471]; go_process: response to stress [goid GO:0006950] [evidence TAS] [pmid 8982460]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence TAS] [pmid 8982460]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10872471] --- --- --- --- --- --- S0003485 // PUP2 SGDID:S0003485, Chr VII from 999145-998363, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000019535 // cdna:Genscan chromosome:SGD1:VII:998363:999145:-1 // ensembl // 10 // --- /// GENEFINDER00000021474 // cdna:GeneFinder chromosome:SGD1:VII:998363:999145:-1 // ensembl // 10 // --- /// YGR253C // cdna:known chromosome:SGD1:VII:998363:999145:-1 gene:YGR253C // ensembl // 10 // --- --- No cerevisiae_gene 1.12682640437365 1.69519239385866 1.16359403300119 1.89182773238577 1.12723333776341 Max fold change below threshold 4 1.89182773238577 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777543_at YGL200C.S1 Integral membrane component of endoplasmic reticulum-derived COPII-coated vesicles, which function in ER to Golgi transport 1.89174743028299 1363.02545166016 2053.23120117188 EMP24 6621 // protein-ER retention // inferred from mutant phenotype /// 6888 // ER to Golgi transport // inferred from physical interaction /// 6888 // ER to Golgi transport // inferred from mutant phenotype /// 16050 // vesicle organization and biogenesis // inferred from mutant phenotype /// 16050 // vesicle organization and biogenesis // inferred from genetic interaction 5783 // endoplasmic reticulum // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity /// 30138 // COPII-coated vesicle // inferred from direct assay --- 2033.07080078125 1074.70520019531 1651.345703125 2073.3916015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL200C /GEN=EMP24 /DB_XREF=GI:6321238 /SEG=NC_001139:-122697,123308 /DEF=Integral membrane component of endoplasmic reticulum-derived COPII-coated vesicles, which function in ER to Golgi transport /NOTE=Emp24p; go_component: COPII-coated vesicle [goid GO:0030138] [evidence IDA] [pmid 11157978]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 8862519]; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 8862519]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IPI] [pmid 11157978]; go_process: vesicle organization and biogenesis [goid GO:0016050] [evidence IGI,IMP] [pmid 8862519] --- --- --- --- --- S0003168 // span:4-26,171-193 // numtm:2 S0003168 // EMP24 SGDID:S0003168, Chr VII from 123310-122699, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019199 // cdna:Genscan chromosome:SGD1:VII:122699:123310:-1 // ensembl // 11 // --- /// GENEFINDER00000021570 // cdna:GeneFinder chromosome:SGD1:VII:122699:123310:-1 // ensembl // 11 // --- /// YGL200C // cdna:known chromosome:SGD1:VII:122699:123310:-1 gene:YGL200C // ensembl // 11 // --- --- No cerevisiae_gene 1.19967065579916 -1.89174743028299 1.08370813758532 -1.23116001509186 1.01983246267949 Max fold change below threshold 4 1.89174743028299 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773206_at YBR259W.S1 Hypothetical protein 1.8916723618675 139.32487487793 158.141975402832 --- --- --- --- 142.713989257813 111.5732421875 167.076507568359 173.569961547852 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR259W /GEN=SHG1 /DB_XREF=GI:6319736 /SEG=NC_001134:+730344,732410 /DEF=Hypothetical ORF /NOTE=Ybr259wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000463 // YBR259W SGDID:S0000463, Chr II from 730382-732448, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021347 // cdna:Genscan chromosome:SGD1:II:730382:732448:1 // ensembl // 11 // --- /// YBR259W // cdna:known chromosome:SGD1:II:730382:732448:1 gene:YBR259W // ensembl // 11 // --- --- No cerevisiae_gene 1.8916723618675 -1.27910587215867 1.43787726250585 1.17070869111882 1.21620846316823 Max fold change below threshold 4 1.8916723618675 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777991_at YER184C.S1 Hypothetical protein 1.89159628061043 70.6070137023926 36.2597751617432 --- --- --- --- 40.4592475891113 64.6814651489258 76.5325622558594 32.060302734375 0.014160200022161 0.000732421991415322 0.000732421991415322 0.014160200022161 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER184C /GEN=FAU1 /DB_XREF=GI:6321032 /SEG=NC_001137:-556291,558675 /DEF=Hypothetical ORF /NOTE=Yer184cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000986 // span:436-458,580-602 // numtm:2 S0000986 // YER184C SGDID:S0000986, Chr V from 558675-556291, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000016961 // cdna:Genscan chromosome:SGD1:V:556291:558675:-1 // ensembl // 10 // --- /// GENEFINDER00000019631 // cdna:GeneFinder chromosome:SGD1:V:556291:557640:-1 // ensembl // 10 // --- /// YER184C // cdna:known chromosome:SGD1:V:556291:558675:-1 gene:YER184C // ensembl // 10 // --- --- No cerevisiae_gene 1.06403379775261 1.59868185898576 1.01774678066469 1.89159628061043 -1.2619733482969 Max fold change below threshold 4 1.89159628061043 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1776745_at YDL017W.S1 DDK (Dbf4-dependent kinase) catalytic subunit required for firing origins and replication fork progression in mitosis through phosphorylation of Mcm2-7p complexes and Cdc45p; kinase activity correlates with cyclical DBF4 expression 1.89152990569467 437.168579101563 728.632141113281 CDC7 6270 // DNA replication initiation // traceable author statement /// 6275 // regulation of DNA replication // traceable author statement /// 6468 // protein amino acid phosphorylation // traceable author statement 5654 // nucleoplasm // traceable author statement 4674 // protein serine/threonine kinase activity // traceable author statement 692.604675292969 422.095947265625 452.2412109375 764.659606933594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL017W /GEN=CDC7 /DB_XREF=GI:6320187 /SEG=NC_001136:+424206,425729 /DEF=DDK (Dbf4-dependent kinase) catalytic subunit required for firing origins and replication fork progression in mitosis through phosphorylation of Mcm2-7p complexes and Cdc45p; kinase activity correlates with cyclical DBF4 expression /NOTE=Cdc7p; go_component: nucleoplasm [goid GO:0005654] [evidence TAS] [pmid 9914182]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence TAS] [pmid 9442876]; go_process: DNA replication initiation [goid GO:0006270] [evidence TAS] [pmid 9442876]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 9442876]; go_process: regulation of DNA replication [goid GO:0006275] [evidence TAS] [pmid 9442876] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-43 /// hanks // 3.1.3 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk3 // 4.0E-13 --- --- S0002175 // CDC7 SGDID:S0002175, Chr IV from 424206-425729, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023474 // cdna:GeneFinder chromosome:SGD1:IV:424206:425729:1 // ensembl // 11 // --- /// GENSCAN00000025088 // cdna:Genscan chromosome:SGD1:IV:424206:425729:1 // ensembl // 11 // --- /// YDL017W // cdna:known chromosome:SGD1:IV:424206:425729:1 gene:YDL017W // ensembl // 11 // --- YDL016C // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene -1.89152990569467 -1.64087023289307 1.07637318260589 -1.53149394292748 1.10403471736622 Max fold change below threshold 4 1.89152990569467 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776838_at YJR102C.S1 Component of the ESCRT-II complex, which is involved in ubiquitin-dependent sorting of proteins into the endosome 1.8911787873877 320.997055053711 591.533843994141 VPS25 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6623 // protein-vacuolar targeting // inferred from physical interaction /// 43162 // ubiquitin-dependent protein catabolism via the multivesicular body pathway // inferred from curator /// 45014 // negative regulation of transcription by glucose // inferred from mutant phenotype 814 // ESCRT II complex // inferred from direct assay --- 572.297607421875 302.614227294922 339.3798828125 610.770080566406 0.00415039015933871 0.0375977009534836 0.00585938012227416 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR102C /GEN=VPS25 /DB_XREF=GI:6322562 /SEG=NC_001142:-619071,619679 /DEF=vacuolar protein sorting (putative) /NOTE=Vps25p; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 12194858]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: negative regulation of transcription by glucose [goid GO:0045014] [evidence IMP] [pmid 11278625]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP,IPI] [pmid 12194858] --- --- --- --- --- --- S0003863 // VPS25 SGDID:S0003863, Chr X from 619679-619071, reverse complement, Verified ORF // sgd // 11 // --- /// YJR102C // cdna:known chromosome:SGD1:X:619071:619679:-1 gene:YJR102C // ensembl // 11 // --- --- No cerevisiae_gene -1.36619258625503 -1.8911787873877 1.31485783004448 -1.68630386303144 1.06722459197033 Max fold change below threshold 4 1.8911787873877 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1774094_at YDR468C.S1 Essential t-SNARE that forms a complex with Tlg2p and Vti1p and mediates fusion of endosome-derived vesicles with the late Golgi; binds the docking complex VFT (Vps fifty-three) through interaction with Vps51p 1.89110473059191 330.747100830078 547.197036743164 TLG1 6906 // vesicle fusion // traceable author statement 138 // Golgi trans cisterna // traceable author statement /// 5769 // early endosome // traceable author statement /// 5802 // Golgi trans face // traceable author statement 5485 // v-SNARE activity // traceable author statement /// 5486 // t-SNARE activity // traceable author statement /// 5486 // t-SNARE activity // inferred from direct assay 507.003631591797 268.099182128906 393.39501953125 587.390441894531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR468C /GEN=TLG1 /DB_XREF=GI:6320676 /SEG=NC_001136:-1398014,1398688 /DEF=member of the syntaxin family of t-SNAREs /NOTE=Tlg1p; go_component: Golgi trans cisterna [goid GO:0000138] [evidence TAS] [pmid 10047442]; go_component: Golgi trans face [goid GO:0005802] [evidence TAS] [pmid 10047442]; go_component: early endosome [goid GO:0005769] [evidence TAS] [pmid 10047442]; go_function: t-SNARE activity [goid GO:0005486] [evidence TAS] [pmid 10047442]; go_function: v-SNARE activity [goid GO:0005485] [evidence TAS] [pmid 10047442]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 10047442] --- --- --- --- scop // a.2.6.Effector domain of the protein kinase pkn/prk1 // All alpha proteins; Long alpha-hairpin; Effector domain of the protein kinase pkn/prk1; Effector domain of the protein kinase pkn/prk1 // 0.490000009536743 /// scop // a.2.6.Effector domain of the protein kinase pkn/prk1 // All alpha proteins; Long alpha-hairpin; Effector domain of the protein kinase pkn/prk1; Effector domain of the protein kinase pkn/prk1 // 0.0529999993741512 S0002876 // span:206-223 // numtm:1 S0002876 // TLG1 SGDID:S0002876, Chr IV from 1398690-1398016, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023680 // cdna:GeneFinder chromosome:SGD1:IV:1398016:1398690:-1 // ensembl // 11 // --- /// YDR468C // cdna:known chromosome:SGD1:IV:1398016:1398690:-1 gene:YDR468C // ensembl // 11 // --- --- No cerevisiae_gene -1.05894312428058 -1.89110473059191 1.09029581072496 -1.28879016362718 1.158552730777 Max fold change below threshold 4 1.89110473059191 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777473_at YLR219W.S1 Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to the cell periphery; msc3 mutants are defective in directing meiotic recombination events to homologous chromatids; potential Cdc28p substrate 1.89088591992104 2030.10986328125 2293.60546875 MSC3 7131 // meiotic recombination // inferred from mutant phenotype --- --- 2353.48266601563 1994.02124023438 2066.19848632813 2233.72827148438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR219W /GEN=MSC3 /DB_XREF=GI:6323248 /SEG=NC_001144:+574153,576339 /DEF=Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to the cell periphery; msc3 mutants are defective in directing meiotic recombination events to homologous chromatids; potential Cdc28p substrate /NOTE=Msc3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiotic recombination [goid GO:0007131] [evidence IMP] [pmid 10511544] --- --- --- --- --- --- S0004209 // MSC3 SGDID:S0004209, Chr XII from 574153-576339, Verified ORF // sgd // 11 // --- /// GENSCAN00000017989 // cdna:Genscan chromosome:SGD1:XII:574153:576339:1 // ensembl // 11 // --- /// GENEFINDER00000024550 // cdna:GeneFinder chromosome:SGD1:XII:574153:576339:1 // ensembl // 11 // --- /// YLR219W // cdna:known chromosome:SGD1:XII:574153:576339:1 gene:YLR219W // ensembl // 11 // --- --- No cerevisiae_gene -1.89088591992104 -1.18026960722795 1.14376186803446 -1.13903997200097 -1.05361189006739 Max fold change below threshold 4 1.89088591992104 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770167_at YGL253W.S1 Hexokinase isoenzyme 2 that catalyzes phosphorylation of glucose in the cytosol; predominant hexokinase during growth on glucose; functions in the nucleus to repress expression of HXK1 and GLK1 and to induce expression of its own gene 1.89067657266422 1722.15386962891 2371.46813964844 HXK2 1302 // replicative cell aging // inferred from mutant phenotype /// 6000 // fructose metabolism // inferred from mutant phenotype /// 6006 // glucose metabolism // inferred from mutant phenotype /// 6096 // glycolysis // inferred from direct assay /// 6096 // glycolysis // inferred from mutant phenotype /// 46015 // regulation of transcription by glucose // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 4396 // hexokinase activity // inferred from mutant phenotype /// 4396 // hexokinase activity // inferred from direct assay 2433.75024414063 1493.69152832031 1950.6162109375 2309.18603515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL253W /GEN=HXK2 /DB_XREF=GI:6321184 /SEG=NC_001139:+23935,25395 /DEF=Hexokinase isoenzyme 2, catalyzes phosphorylation of glucose in the cytosol, predominate hexokinase during growth on glucose, functions in the nucleus to repress expression of HXK1 and GLK1 and to induce expression of its own gene /NOTE=Hxk2p; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 12007644]; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 12007644]; go_function: hexokinase activity [goid GO:0004396] [evidence IDA] [pmid 12611889]; go_function: hexokinase activity [goid GO:0004396] [evidence IMP] [pmid 6341351]; go_process: fructose metabolism [goid GO:0006000] [evidence IMP] [pmid 6300872] --- --- --- --- --- --- S0003222 // HXK2 SGDID:S0003222, Chr VII from 23935-25395, Verified ORF // sgd // 9 // --- /// GENEFINDER00000021440 // cdna:GeneFinder chromosome:SGD1:VII:23935:25395:1 // ensembl // 9 // --- /// GENSCAN00000019161 // cdna:Genscan chromosome:SGD1:VII:23980:25395:1 // ensembl // 9 // --- /// YGL253W // cdna:known chromosome:SGD1:VII:23935:25395:1 gene:YGL253W // ensembl // 9 // --- M14411 // gb // 7 // Cross Hyb Matching Probes No cerevisiae_gene 1.89067657266422 -1.62935264610989 -1.17995779744169 -1.24768277352259 -1.05394290762543 Max fold change below threshold 4 1.89067657266422 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779816_at YOR234C.S1 Ribosomal protein L37 of the large (60S) ribosomal subunit, nearly identical to Rpl33Ap and has similarity to rat L35a; rpl33b null mutant exhibits normal growth while rpl33a rpl33b double null mutant is inviable 1.89026392599169 890.029113769531 1596.90673828125 RPL33B 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 1568.97778320313 950.027160644531 830.031066894531 1624.83569335938 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR234C /GEN=RPL33B /DB_XREF=GI:6324808 /SEG=NC_001147:-778555,779405 /DEF=Ribosomal protein L37 of the large (60S) ribosomal subunit, nearly identical to Rpl33Ap and has similarity to rat L35a; rpl33b null mutant exhibits normal growth while rpl33a rpl33b double null mutant is inviable /NOTE=Rpl33bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0005760 // RPL33B SGDID:S0005760, Chr XV from 779405-779387,778859-778555, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YOR234C // cdna:known chromosome:SGD1:XV:778555:779405:-1 gene:YOR234C // ensembl // 11 // --- --- No cerevisiae_gene 1.40065288702322 -1.65150834439162 -1.27138946238891 -1.89026392599169 1.03560146660727 Max fold change below threshold 4 1.89026392599169 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771738_at YNL270C.S1 Basic amino acid transporter, involved in uptake of cationic amino acids 1.89012139342535 207.99201965332 134.065559387207 ALP1 15802 // basic amino acid transport // inferred from direct assay 5886 // plasma membrane // inferred from sequence similarity 15174 // basic amino acid transporter activity // inferred from direct assay 129.542068481445 171.133804321289 244.850234985352 138.589050292969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL270C /GEN=ALP1 /DB_XREF=GI:6324059 /SEG=NC_001146:-135939,137660 /DEF=Basic amino acid transporter, involved in uptake of cationic amino acids /NOTE=Alp1p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 10654085]; go_function: basic amino acid transporter activity [goid GO:0015174] [evidence IDA] [pmid 10654085]; go_process: basic amino acid transport [goid GO:0015802] [evidence IDA] [pmid 10654085] --- --- --- --- --- S0005214 // span:74-93,97-119,126-143,153-170,183-202,212-234,307-329,360-379,400-422,432-454,480-502,512-531 // numtm:12 S0005214 // ALP1 SGDID:S0005214, Chr XIV from 137660-135939, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019826 // cdna:Genscan chromosome:SGD1:XIV:135939:137660:-1 // ensembl // 11 // --- /// GENEFINDER00000020596 // cdna:GeneFinder chromosome:SGD1:XIV:135939:137660:-1 // ensembl // 11 // --- /// YNL270C // cdna:known chromosome:SGD1:XIV:135939:137660:-1 gene:YNL270C // ensembl // 11 // --- --- No cerevisiae_gene -1.02111836907207 1.32106740557258 -1.02085842991383 1.89012139342535 1.0698381762587 Max fold change below threshold 4 1.89012139342535 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769321_at YNR074C.S1 Mitochondrial cell death effector that translocates to the nucleus in response to apoptotic stimuli, homolog of mammalian Apoptosis-Inducing Factor, putative reductase 1.88976498475018 11.7527527809143 8.84042429924011 AIF1 304 // response to singlet oxygen // inferred from mutant phenotype /// 43065 // positive regulation of apoptosis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from sequence similarity 16654 // oxidoreductase activity, acting on NADH or NADPH, disulfide as acceptor // inferred from sequence similarity 11.5624103546143 12.6304969787598 10.8750085830688 6.11843824386597 0.0239257998764515 0.194580003619194 0.0952147990465164 0.018554700538516 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR074C /GEN=HXT17 /DB_XREF=GI:6324402 /SEG=NC_001146:-777599,778735 /DEF=putative reductase /NOTE=Ynr074cp; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 11409174]; go_function: oxidoreductase activity, acting on NADH or NADPH, disulfide as acceptor [goid GO:0016654] [evidence ISS] [pmid 11409174]; go_process: response to singlet oxygen [goid GO:0000304] [evidence IMP] [pmid 11409174] --- --- --- --- --- S0005357 // span:7-25 // numtm:1 S0005357 // YNR074C SGDID:S0005357, Chr XIV from 778736-777600, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020100 // cdna:Genscan chromosome:SGD1:XIV:777600:778736:-1 // ensembl // 11 // --- /// YNR074C // cdna:known chromosome:SGD1:XIV:777600:778736:-1 gene:YNR074C // ensembl // 11 // --- --- No cerevisiae_gene -1.45235217120317 1.09237577558552 -1.01337515865245 -1.06320930841522 -1.88976498475018 Max fold change below threshold 4 1.88976498475018 Max fold change below threshold PPAPAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1774162_at YGR111W.S1 Hypothetical protein 1.88975642278362 1074.73059082031 1232.275390625 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1206.8623046875 905.403198242188 1244.05798339844 1257.6884765625 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR111W /GEN=CLB6 /DB_XREF=GI:6321549 /SEG=NC_001139:+715830,717032 /DEF=Hypothetical ORF /NOTE=Ygr111wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003343 // YGR111W SGDID:S0003343, Chr VII from 715832-717034, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019427 // cdna:Genscan chromosome:SGD1:VII:715832:717034:1 // ensembl // 11 // --- /// GENEFINDER00000021766 // cdna:GeneFinder chromosome:SGD1:VII:715832:717034:1 // ensembl // 11 // --- /// YGR111W // cdna:known chromosome:SGD1:VII:715832:717034:1 gene:YGR111W // ensembl // 11 // --- --- No cerevisiae_gene -1.88975642278362 -1.33295564565112 1.06064420829129 1.03082015120239 1.0421143088798 Max fold change below threshold 4 1.88975642278362 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778486_at YIL123W.S1 Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p) that may participate in DNA replication, promoter contains SCB regulation box at -300 bp indicating that expression may be cell cycle-regulated 1.88961273981009 936.265411376953 1315.11151123047 SIM1 226 // microtubule cytoskeleton organization and biogenesis // inferred from genetic interaction 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 1210.5888671875 640.654479980469 1231.87634277344 1419.63415527344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL123W /GEN=SIM1 /DB_XREF=GI:6322068 /SEG=NC_001141:+128151,129578 /DEF=(putative) invovled in control of DNA replication /NOTE=Sim1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 11958935]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: microtubule cytoskeleton organization and biogenesis [goid GO:0000226] [evidence IGI] [pmid 10612745] --- --- --- --- --- --- S0001385 // SIM1 SGDID:S0001385, Chr IX from 128151-129578, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019121 // cdna:GeneFinder chromosome:SGD1:IX:128151:129578:1 // ensembl // 11 // --- /// GENSCAN00000016383 // cdna:Genscan chromosome:SGD1:IX:128967:129578:1 // ensembl // 11 // --- /// YIL123W // cdna:known chromosome:SGD1:IX:128151:129578:1 gene:YIL123W // ensembl // 11 // --- --- No cerevisiae_gene 1.6405616375037 -1.88961273981009 -1.19804268978363 1.01758439728212 1.17268066290053 Max fold change below threshold 4 1.88961273981009 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773919_at YLR395C.S1 Subunit VIII of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain 1.8895943397601 4715.57177734375 2808.19152832031 COX8 6123 // mitochondrial electron transport, cytochrome c to oxygen // inferred from direct assay /// 9060 // aerobic respiration // traceable author statement 5751 // respiratory chain complex IV (sensu Eukaryota) // inferred from physical interaction 4129 // cytochrome-c oxidase activity // inferred from direct assay 2865.17504882813 5414.0185546875 4017.125 2751.2080078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR395C /GEN=COX8 /DB_XREF=GI:6323427 /SEG=NC_001144:-909729,909965 /DEF=Subunit VIII of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain /NOTE=Cox8p; go_component: respiratory chain complex IV (sensu Eukarya) [goid GO:0005751] [evidence IPI] [pmid 1331058]; go_function: cytochrome-c oxidase activity [goid GO:0004129] [evidence IDA] [pmid 1331058]; go_process: aerobic respiration [goid GO:0009060] [evidence TAS] [pmid 10385027] --- --- --- --- --- S0004387 // span:50-72 // numtm:1 S0004387 // COX8 SGDID:S0004387, Chr XII from 909965-909729, reverse complement, Verified ORF // sgd // 11 // --- /// M34474 // S.cerevisiae vacuolar function expression protein (SLP1) gene, complete cds. // gb // 11 // --- /// YLR395C // cdna:known chromosome:SGD1:XII:909729:909965:-1 gene:YLR395C // ensembl // 11 // --- --- No cerevisiae_gene -1.33293001597709 1.8895943397601 1.13561170361656 1.40205220677286 -1.04142436365844 Max fold change below threshold 4 1.8895943397601 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775798_at SPBC8D2.12c.S1 --- 1.88946312809783 --- --- --- --- 6.62856531143188 6.09760856628418 8.34328460693359 8.09418487548828 0.171387001872063 0.0461426004767418 0.194580003619194 0.0375977009534836 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8D2.12c /DEF=conserved protein --- --- --- --- --- --- SPBC8D2.12c // |||conserved protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.88946312809783 -1.08707622658554 -1.06023047266566 1.2586863393417 1.22110660379686 Max fold change below threshold 4 1.88946312809783 Max fold change below threshold AAPAAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1777134_at YGL103W.S1 Ribosomal protein L29 of the large (60S) ribosomal subunit, has similarity to E. coli L15 and rat L27a ribosomal proteins; may have peptidyl transferase activity; can mutate to cycloheximide resistance 1.88936800649449 2761.14562988281 4522.86303710938 RPL28 6412 // protein biosynthesis // traceable author statement 5634 // nucleus // inferred from mutant phenotype /// 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3723 // RNA binding // inferred from direct assay /// 3735 // structural constituent of ribosome // traceable author statement 5057.55078125 2676.84790039063 2845.443359375 3988.17529296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL103W /GEN=RPL28 /DB_XREF=GI:6321335 /SEG=NC_001139:+310968,311928 /DEF=Ribosomal protein L29 of the large (60S) ribosomal subunit, has similarity to E. coli L15 and rat L27a ribosomal proteins; may have peptidyl transferase activity; can mutate to cycloheximide resistance /NOTE=Rpl28p; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_component: nucleus [goid GO:0005634] [evidence IMP] [pmid 2104804]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 6337137]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0003071 // RPL28 SGDID:S0003071, Chr VII from 310970-311018,311530-311930, intron sequence removed, Verified ORF // sgd // 11 // --- /// YGL103W // cdna:known chromosome:SGD1:VII:310970:311930:1 gene:YGL103W // ensembl // 11 // --- GENEFINDER00000021408 // ensembl // 7 // Cross Hyb Matching Probes /// GENSCAN00000019274 // ensembl // 7 // Cross Hyb Matching Probes /// YGL102C // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene 1.07431541870023 -1.88936800649449 -1.56163766650758 -1.7774209999952 -1.26813653105133 Max fold change below threshold 4 1.88936800649449 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774997_at SPBC19G7.09.S1 --- 1.88936654126808 --- --- --- --- 1.23330104351044 2.06186532974243 1.00712919235229 0.65275901556015 0.533936023712158 0.533936023712158 0.753906011581421 0.780517995357513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19G7.09 /GEN=ulp1 /DEF=peptidase family C48 --- --- --- --- --- --- SPBC19G7.09 // |ulp1||peptidase family C48|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.245497437026 1.67182646977545 -1.34493393258807 -1.22457084242577 -1.88936654126808 Max fold change below threshold 0 1.88936654126808 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778852_at YPL027W.S1 Protein of unknown function involved in the assembly of the prospore membrane during sporulation 1.88885349456863 52.9756317138672 69.3290596008301 SMA1 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype --- --- 63.7321929931641 71.5093841552734 34.4418792724609 74.9259262084961 0.000732421991415322 0.00292969006113708 0.00415039015933871 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL027W /GEN=SMA1 /DB_XREF=GI:6325230 /SEG=NC_001148:+499661,500398 /DEF=Spore Membrane Assembly /NOTE=Sma1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence IMP] [pmid 11470404] --- --- --- --- --- --- S0005948 // SMA1 SGDID:S0005948, Chr XVI from 499663-500400, Verified ORF // sgd // 11 // --- /// GENSCAN00000017167 // cdna:Genscan chromosome:SGD1:XVI:499663:500400:1 // ensembl // 11 // --- /// YPL027W // cdna:known chromosome:SGD1:XVI:499663:500400:1 gene:YPL027W // ensembl // 11 // --- --- No cerevisiae_gene 1.88885349456863 1.12202924137482 -1.01305602528691 -1.85042728037558 1.17563703192408 Max fold change below threshold 4 1.88885349456863 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772556_at YKL164C.S1 O-glycosylated protein required for cell wall stability; attached to the cell wall via beta-1,3-glucan; mediates mitochondrial translocation of Apn1p; expression regulated by the cell integrity pathway and by Swi5p during the cell cycle 1.8887260135768 2129.94665527344 3247.49194335938 PIR1 6886 // intracellular protein transport // inferred from mutant phenotype /// 6886 // intracellular protein transport // inferred from physical interaction /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 9277 // cell wall (sensu Fungi) // traceable author statement /// 9277 // cell wall (sensu Fungi) // inferred from direct assay 5199 // structural constituent of cell wall // inferred from physical interaction 3293.501953125 1743.76904296875 2516.12426757813 3201.48193359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL164C /GEN=PIR1 /DB_XREF=GI:6322684 /SEG=NC_001143:-141799,142824 /DEF=Protein containing tandem internal repeats /NOTE=Pir1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence TAS] [pmid 10407261]; go_function: structural constituent of cell wall [goid GO:0005199] [evidence IPI] [pmid 9301021]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 10407261]; go_process: intracellular protein transport [goid GO:0006886] [evidence IMP,IPI] [pmid 11238901] --- --- --- --- --- --- S0001647 // PIR1 SGDID:S0001647, Chr XI from 142824-141799, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018296 // cdna:Genscan chromosome:SGD1:XI:141799:142824:-1 // ensembl // 11 // --- /// GENEFINDER00000023077 // cdna:GeneFinder chromosome:SGD1:XI:141799:142824:-1 // ensembl // 11 // --- /// YKL164C // cdna:known chromosome:SGD1:XI:141799:142824:-1 gene:YKL164C // ensembl // 11 // --- --- No cerevisiae_gene 1.0519040362978 -1.8887260135768 -1.50370632358405 -1.3089583831625 -1.02874294512353 Max fold change below threshold 4 1.8887260135768 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780155_at YIL145C.S1 Pantothenate synthase, also known as pantoate-beta-alanine ligase, required for pantothenic acid biosynthesis, deletion causes pantothenic acid auxotrophy, homologous to E. coli panC 1.88816612157581 584.062561035156 829.536834716797 PAN6 15940 // pantothenate biosynthesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4592 // pantoate-beta-alanine ligase activity // inferred from direct assay /// 4592 // pantoate-beta-alanine ligase activity // inferred from sequence similarity 779.290893554688 522.207641601563 645.91748046875 879.782775878906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL145C /GEN=PAN6 /DB_XREF=GI:37362661 /SEG=NC_001141:-76354,77283 /DEF=Pan6p /NOTE=go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: pantoate-beta-alanine ligase activity [goid GO:0004592] [evidence IDA,ISS] [pmid 10417331]; go_process: pantothenate biosynthesis [goid GO:0015940] [evidence IMP] [pmid 11154694] --- --- --- --- --- --- S0001407 // PAN6 SGDID:S0001407, Chr IX from 77283-76354, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016365 // cdna:Genscan chromosome:SGD1:IX:76354:77187:-1 // ensembl // 11 // --- /// GENEFINDER00000019073 // cdna:GeneFinder chromosome:SGD1:IX:76354:77187:-1 // ensembl // 11 // --- /// YIL145C // cdna:known chromosome:SGD1:IX:76354:77283:-1 gene:YIL145C // ensembl // 11 // --- --- No cerevisiae_gene 1.88816612157581 -1.49230082341322 -1.37515000429738 -1.20648676823105 1.12895297911904 Max fold change below threshold 4 1.88816612157581 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773075_at YGR281W.S1 Plasma membrane transporter of the ATP-binding cassette (ABC) family, mediates export of many different organic anions including oligomycin 1.88770883373785 1786.91033935547 1254.93139648438 YOR1 6810 // transport // traceable author statement /// 42493 // response to drug // traceable author statement 5886 // plasma membrane // inferred from direct assay 8559 // xenobiotic-transporting ATPase activity // traceable author statement 1172.72436523438 1684.74377441406 1889.07690429688 1337.13842773438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR281W /GEN=YOR1 /DB_XREF=GI:6321720 /SEG=NC_001139:+1052829,1057262 /DEF=Plasma membrane transporter of the ATP-binding cassette (ABC) family, mediates export of many different organic anions including oligomycin /NOTE=Yor1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 9575223]; go_function: xenobiotic-transporting ATPase activity [goid GO:0008559] [evidence TAS] [pmid 11421285]; go_process: response to drug [goid GO:0042493] [evidence TAS] [pmid 11421285]; go_process: transport [goid GO:0006810] [evidence TAS] [pmid 11421285] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 4.90000009536743 S0003513 // span:206-228,249-271,329-351,358-380,433-455,467-489,899-921,934-956,1017-1048,1117-1139,1144-1166 // numtm:11 S0003513 // YOR1 SGDID:S0003513, Chr VII from 1052830-1057263, Verified ORF // sgd // 11 // --- /// GENSCAN00000019557 // cdna:Genscan chromosome:SGD1:VII:1052830:1057263:1 // ensembl // 11 // --- /// GENEFINDER00000021456 // cdna:GeneFinder chromosome:SGD1:VII:1054270:1057263:1 // ensembl // 11 // --- /// YGR281W // cdna:known chromosome:SGD1:VII:1052830:1057263:1 gene:YGR281W // ensembl // 11 // --- --- No cerevisiae_gene -1.88770883373785 1.43660678021076 1.5132061574538 1.61084476480484 1.1401983853786 Max fold change below threshold 4 1.88770883373785 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774687_at YML076C.S1 Homodimeric Zn2Cys6 zinc finger transcription factor; binds to a weak acid response element to induce transcription of PDR12 and FUN34, encoding an acid transporter and a putative ammonia transporter, respectively 1.88762790274559 533.826843261719 813.323120117188 WAR1 1101 // response to acid // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 3700 // transcription factor activity // inferred from mutant phenotype /// 3700 // transcription factor activity // inferred from sequence similarity 759.888610839844 558.077331542969 509.576354980469 866.757629394531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML076C /GEN=WAR1 /DB_XREF=GI:6323564 /SEG=NC_001145:-112513,115347 /DEF=ORF /NOTE=War1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12588995]; go_function: transcription factor activity [goid GO:0003700] [evidence IMP,ISS] [pmid 12588995]; go_process: response to acid [goid GO:0001101] [evidence IMP] [pmid 12588995] --- --- --- --- --- --- S0004541 // WAR1 SGDID:S0004541, Chr XIII from 115347-112513, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018653 // cdna:Genscan chromosome:SGD1:XIII:112513:115347:-1 // ensembl // 11 // --- /// GENEFINDER00000022078 // cdna:GeneFinder chromosome:SGD1:XIII:112513:115347:-1 // ensembl // 11 // --- /// YML076C // cdna:known chromosome:SGD1:XIII:112513:115347:-1 gene:YML076C // ensembl // 11 // --- --- No cerevisiae_gene -1.88762790274559 -1.36161884364468 -1.07929440757991 -1.49121638673554 1.14063774220352 Max fold change below threshold 4 1.88762790274559 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771396_at YOL077C.S1 Nucleolar protein, constituent of 66S pre-ribosomal particles; depletion leads to defects in rRNA processing and a block in the assembly of large ribosomal subunits; possesses a sigma(70)-like RNA-binding motif 1.88714156636185 1009.38760375977 1493.40155029297 BRX1 27 // ribosomal large subunit assembly and maintenance // inferred from physical interaction 5730 // nucleolus // inferred from physical interaction 8097 // 5S rRNA binding // inferred from physical interaction /// 42134 // rRNA primary transcript binding // inferred from physical interaction 1549.8818359375 938.945861816406 1079.82934570313 1436.92126464844 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL077C /GEN=BRX1 /DB_XREF=GI:6324496 /SEG=NC_001147:-185847,186722 /DEF=Essential nucleolar protein required for biogenesis of the 60S ribosomal subunit /NOTE=Brx1p; go_component: nucleolus [goid GO:0005730] [evidence IPI] [pmid 11864607]; go_function: 5S rRNA binding [goid GO:0008097] [evidence IPI] [pmid 11864606]; go_function: rRNA primary transcript binding [goid GO:0042134] [evidence IPI] [pmid 11864606]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IPI] [pmid 11864607] --- --- --- --- --- --- S0005437 // BRX1 SGDID:S0005437, Chr XV from 186722-185847, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017404 // cdna:Genscan chromosome:SGD1:XV:185847:186722:-1 // ensembl // 11 // --- /// GENEFINDER00000022844 // cdna:GeneFinder chromosome:SGD1:XV:185847:186722:-1 // ensembl // 11 // --- /// YOL077C // cdna:known chromosome:SGD1:XV:185847:186722:-1 gene:YOL077C // ensembl // 11 // --- --- No cerevisiae_gene 1.88714156636185 -1.65066155458551 -1.15768200853301 -1.43530257082271 -1.07861291642636 Max fold change below threshold 4 1.88714156636185 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771364_at YHR140W.S1 Hypothetical protein 1.88593013649519 444.280380249023 287.505035400391 --- --- 16021 // integral to membrane // inferred from sequence similarity --- 260.307250976563 433.672760009766 454.888000488281 314.702819824219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR140W /GEN=SPS100 /DB_XREF=GI:6321933 /SEG=NC_001140:+380573,381292 /DEF=Hypothetical ORF /NOTE=Yhr140wp; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 12524434]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001182 // span:12-31,46-68,88-110,130-152,165-187,202-221 // numtm:6 S0001182 // YHR140W SGDID:S0001182, Chr VIII from 380574-381293, Uncharacterized ORF // sgd // 11 // --- /// YHR140W // cdna:known chromosome:SGD1:VIII:380574:381293:1 gene:YHR140W // ensembl // 11 // --- GENSCAN00000016671 // ensembl // 8 // Cross Hyb Matching Probes /// GENEFINDER00000020156 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.88593013649519 1.6660033801702 1.71421031430237 1.74750414666412 1.20896678307495 Max fold change below threshold 4 1.88593013649519 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774477_at YER007W.S1 Microtubule effector required for tubulin heterodimer formation, binds alpha-tubulin, required for normal microtubule function, null mutant exhibits cold-sensitive microtubules and sensitivity to benomyl 1.8858503842981 404.98600769043 366.254470825195 PAC2 7023 // post-chaperonin tubulin folding pathway // traceable author statement /// 7024 // alpha-tubulin folding // traceable author statement --- 43014 // alpha-tubulin binding // inferred from physical interaction 337.943145751953 374.965393066406 435.006622314453 394.565795898438 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER007W /GEN=PAC2 /DB_XREF=GI:6320843 /SEG=NC_001137:+164526,166082 /DEF=Microtubule effector required for tubulin heterodimer formation, binds alpha-tubulin, required for normal microtubule function, null mutant exhibits cold-sensitive microtubules and sensitivity to benomyl /NOTE=Pac2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: co-chaperone activity [goid GO:0003767] [evidence TAS] [pmid 9885248]; go_process: alpha-tubulin folding [goid GO:0007024] [evidence TAS] [pmid 9885248]; go_process: post-chaperonin tubulin folding pathway [goid GO:0007023] [evidence TAS] [pmid 9885248] --- --- --- --- scop // a.4.5.Restriction endonuclease FokI, N-terminal (recognition) do // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Restriction endonuclease FokI, N-terminal (recognition) domain // 3.90000009536743 --- S0000809 // PAC2 SGDID:S0000809, Chr V from 164526-166082, Verified ORF // sgd // 11 // --- /// GENSCAN00000016809 // cdna:Genscan chromosome:SGD1:V:164526:166082:1 // ensembl // 11 // --- /// YER007W // cdna:known chromosome:SGD1:V:164526:166082:1 gene:YER007W // ensembl // 11 // --- --- No cerevisiae_gene -1.8858503842981 1.10955170353308 1.44991254520499 1.28721836138006 1.16755081692956 Max fold change below threshold 4 1.8858503842981 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777603_at YFR047C.S1 Quinolinate phosphoribosyl transferase, required for biosynthesis of nicotinic acid from tryptophan via kynurenine pathway 1.88580333825632 1859.98156738281 1144.7666015625 BNA6 9435 // NAD biosynthesis // inferred from direct assay /// 9435 // NAD biosynthesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4514 // nicotinate-nucleotide diphosphorylase (carboxylating) activity // inferred from direct assay 1094.57727050781 1655.8056640625 2064.15747070313 1194.95593261719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR047C /GEN=BNA6 /DB_XREF=GI:19705600 /SEG=NC_001138:-244266,245153 /DEF=Quinolinate phosphoribosyl transferase, required for biosynthesis of nicotinic acid from tryptophan via kynurenine pathway /NOTE=Bna6p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: nicotinate-nucleotide diphosphorylase (carboxylating) activity [goid GO:0004514] [evidence IDA] [pmid 12062417]; go_process: NAD biosynthesis [goid GO:0009435] [evidence IDA,IMP] [pmid 12062417] --- --- --- --- --- --- S0001943 // BNA6 SGDID:S0001943, Chr VI from 245153-244266, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018574 // cdna:GeneFinder chromosome:SGD1:VI:244266:245482:-1 // ensembl // 11 // --- /// GENSCAN00000023283 // cdna:Genscan chromosome:SGD1:VI:244266:245000:-1 // ensembl // 11 // --- /// YFR047C // cdna:known chromosome:SGD1:VI:244266:245153:-1 gene:YFR047C // ensembl // 11 // --- --- No cerevisiae_gene -1.09590072581549 1.51273528939105 1.39616096173686 1.88580333825632 1.09170541433115 Max fold change below threshold 4 1.88580333825632 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776921_at YER171W.S1 5' to 3' DNA helicase, involved in nucleotide excision repair and transcription; subunit of RNA polymerase II transcription initiation factor TFIIH; subunit of Nucleotide Excision Repair Factor 3 (NEF3); homolog of human XPD protein 1.88430222620137 191.974456787109 297.308151245117 RAD3 717 // nucleotide-excision repair, DNA duplex unwinding // traceable author statement /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 7070 // negative regulation of transcription from RNA polymerase II promoter, mitotic // traceable author statement 112 // nucleotide excision repair factor 3 complex // traceable author statement /// 5675 // transcription factor TFIIH complex // traceable author statement /// 5675 // transcription factor TFIIH complex // inferred from direct assay 3678 // DNA helicase activity // traceable author statement /// 16251 // general RNA polymerase II transcription factor activity // traceable author statement 281.577880859375 149.433502197266 234.515411376953 313.038421630859 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER171W /GEN=RAD3 /DB_XREF=GI:6321019 /SEG=NC_001137:+527077,529413 /DEF=5' to 3' DNA helicase, involved in nucleotide excision repair and transcription; subunit of RNA polymerase II transcription initiation factor TFIIH; subunit of Nucleotide Excision Repair Factor 3 (NEF3); homolog of human XPD protein /NOTE=Rad3p; go_component: nucleotide excision repair factor 3 complex [goid GO:0000112] [evidence TAS] [pmid 10915862]; go_component: transcription factor TFIIH complex [goid GO:0005675] [evidence TAS] [pmid 9774381]; go_function: DNA helicase activity [goid GO:0003678] [evidence TAS] [pmid 9774381]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9774381]; go_process: negative regulation of transcription from Pol II promoter, mitotic [goid GO:0007070] [evidence TAS] [pmid 10384273]; go_process: nucleotide-excision repair, DNA duplex unwinding [goid GO:0000717] [evidence TAS] [pmid 10915862]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 10384286] --- --- --- --- --- --- S0000973 // RAD3 SGDID:S0000973, Chr V from 527077-529413, Verified ORF // sgd // 11 // --- /// GENSCAN00000016950 // cdna:Genscan chromosome:SGD1:V:527077:529413:1 // ensembl // 11 // --- /// GENEFINDER00000019619 // cdna:GeneFinder chromosome:SGD1:V:527077:529413:1 // ensembl // 11 // --- /// YER171W // cdna:known chromosome:SGD1:V:527077:529413:1 gene:YER171W // ensembl // 11 // --- --- No cerevisiae_gene 1.34807511728948 -1.88430222620137 -1.01470343542785 -1.20067964491585 1.1117294464873 Max fold change below threshold 4 1.88430222620137 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779346_at SPAC3H8.06.S1 --- 1.8842740405123 --- --- --- --- 1.12038600444794 1.40971374511719 2.00744819641113 2.11111426353455 0.919434010982513 0.780517995357513 0.5 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H8.06 /GEN=aur1 /DEF=inositol phosphorylceramide synthase (predicted) --- --- --- --- --- --- SPAC3H8.06 // |aur1||inositol phosphorylceramide synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.14272447701378 1.25823933851424 1.35308628130147 1.79174694118059 1.8842740405123 Max fold change below threshold 0 1.8842740405123 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777316_at YLR078C.S1 v-SNARE (vesicle specific SNAP receptor), localized to the endoplasmic reticulum membrane and necessary for vesicular transport from the ER to the Golgi 1.88293694189159 548.935836791992 892.989593505859 BOS1 6888 // ER to Golgi transport // traceable author statement 5789 // endoplasmic reticulum membrane // inferred from direct assay 5485 // v-SNARE activity // traceable author statement 839.424011230469 445.805694580078 652.065979003906 946.55517578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR078C /GEN=BOS1 /DB_XREF=GI:6323107 /SEG=NC_001144:-285737,286560 /DEF=v-SNARE (vesicle specific SNAP receptor), localized to the endoplasmic reticulum membrane and necessary for vesicular transport from the ER to the Golgi /NOTE=Bos1p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 8500167]; go_function: v-SNARE activity [goid GO:0005485] [evidence TAS] [pmid 10547372]; go_process: ER to Golgi transport [goid GO:0006888] [evidence TAS] [pmid 10547372] --- --- --- --- --- S0004068 // span:223-240 // numtm:1 S0004068 // BOS1 SGDID:S0004068, Chr XII from 286560-286558,286468-285737, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YLR078C // cdna:known chromosome:SGD1:XII:285737:286560:-1 gene:YLR078C // ensembl // 11 // --- --- No cerevisiae_gene -1.15020325957981 -1.88293694189159 1.1749825112449 -1.28732986884666 1.12762461296972 Max fold change below threshold 4 1.88293694189159 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772484_at YLR242C.S1 Protein required for normal intracellular sterol distribution and for sphingolipid metabolism; similar to Nup120p and C. elegans R05H5.5 protein 1.88287525800005 69.4020729064941 93.5149879455566 ARV1 6665 // sphingolipid metabolism // inferred from mutant phenotype /// 15918 // sterol transport // inferred from mutant phenotype /// 16125 // sterol metabolism // inferred from sequence similarity 5783 // endoplasmic reticulum // inferred from direct assay /// 5794 // Golgi apparatus // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity --- 86.4294891357422 65.3771209716797 73.4270248413086 100.600486755371 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR242C /GEN=ARV1 /DB_XREF=GI:6323271 /SEG=NC_001144:-622920,623885 /DEF=ARE2 Required for Viability 1. similar to Nup120p and C.elegans R05H5.5 protein. /NOTE=Arv1p; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 12145310]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 12145310]; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 11063737]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: sterol metabolism [goid GO:0016125] [evidence ISS] [pmid 11111085]; go_process: sterol transport [goid GO:0015918] [evidence IMP] [pmid 11063737] --- --- --- --- --- S0004232 // span:177-199,214-236,248-270 // numtm:3 S0004232 // ARV1 SGDID:S0004232, Chr XII from 623885-622920, reverse complement, Verified ORF // sgd // 11 // --- /// YLR242C // cdna:known chromosome:SGD1:XII:622920:623885:-1 gene:YLR242C // ensembl // 11 // --- --- No cerevisiae_gene 1.88287525800005 -1.32201430486947 1.30929923027667 -1.177080091731 1.16396021498371 Max fold change below threshold 4 1.88287525800005 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771469_at YDR292C.S1 Signal recognition particle (SRP) receptor - alpha subunit; contain GTPase domains; involved in SRP-dependent protein targeting; interacts with SRP102p 1.88268436803043 1199.36471557617 830.484710693359 SRP101 6614 // SRP-dependent cotranslational protein-membrane targeting // inferred from curator /// 6614 // SRP-dependent cotranslational protein-membrane targeting // traceable author statement /// 45047 // protein-ER targeting // inferred from mutant phenotype 5785 // signal recognition particle receptor complex // traceable author statement /// 5789 // endoplasmic reticulum membrane // inferred from direct assay 3924 // GTPase activity // traceable author statement /// 5047 // signal recognition particle binding // inferred from sequence similarity /// 5047 // signal recognition particle binding // inferred from mutant phenotype /// 5525 // GTP binding // inferred from physical interaction 780.638122558594 929.034240722656 1469.69519042969 880.331298828125 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR292C /GEN=SRP101 /DB_XREF=GI:6320498 /SEG=NC_001136:-1043138,1045003 /DEF=signal recognition particle receptor - alpha subunit /NOTE=Srp101p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 9679135]; go_function: signal recognition particle binding [goid GO:0005047] [evidence IMP,ISS] [pmid 1327299]; go_process: protein-ER targeting [goid GO:0045047] [evidence IMP] [pmid 1327299] --- --- --- --- --- --- S0002700 // SRP101 SGDID:S0002700, Chr IV from 1045005-1043140, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023944 // cdna:GeneFinder chromosome:SGD1:IV:1043140:1045005:-1 // ensembl // 11 // --- /// GENSCAN00000025323 // cdna:Genscan chromosome:SGD1:IV:1043140:1045005:-1 // ensembl // 11 // --- /// YDR292C // cdna:known chromosome:SGD1:IV:1043140:1045005:-1 gene:YDR292C // ensembl // 11 // --- --- No cerevisiae_gene 1.01638853867971 1.19009591496465 1.59016245145123 1.88268436803043 1.12770728637077 Max fold change below threshold 4 1.88268436803043 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775084_at SPBC9B6.03.S1 --- 1.88256607216314 --- --- --- --- 9.36611175537109 17.63232421875 13.4166812896729 8.31307315826416 0.111571997404099 0.171387001872063 0.219482004642487 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC9B6.03 /DEF=zinc finger protein --- --- --- --- --- --- SPBC9B6.03 // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.10744887527645 1.88256607216314 -1.17021447720221 1.43247076696249 -1.12667260074093 Max fold change below threshold 4 1.88256607216314 Max fold change below threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1775510_at YGR221C.S1 Protein involved in localization of Cdc24p to the site of bud growth; may act as a membrane anchor; localizes to the bud neck and bud tip; potentially phosphorylated by Cdc28p 1.88222930398991 23.6087226867676 36.4273986816406 TOS2 7117 // budding cell bud growth // inferred from mutant phenotype /// 7117 // budding cell bud growth // inferred from physical interaction 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay --- 33.5564079284668 22.4558391571045 24.7616062164307 39.2983894348145 0.00805663969367743 0.0375977009534836 0.0375977009534836 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR221C /GEN=TOS2 /DB_XREF=GI:6321660 /SEG=NC_001139:-937125,938993 /DEF=Protein of unknown function that localizes to the bud neck and bud tip; potentially phosphorylated by Cdc28p /NOTE=Tos2p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 11489916]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 11489916]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003453 // span:40-62 // numtm:1 S0003453 // TOS2 SGDID:S0003453, Chr VII from 938995-937127, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019512 // cdna:Genscan chromosome:SGD1:VII:937127:938995:-1 // ensembl // 11 // --- /// GENEFINDER00000021656 // cdna:GeneFinder chromosome:SGD1:VII:937127:938164:-1 // ensembl // 11 // --- /// YGR221C // cdna:known chromosome:SGD1:VII:937127:938995:-1 gene:YGR221C // ensembl // 11 // --- --- No cerevisiae_gene 1.88222930398991 -1.4943288333026 1.2911785004475 -1.35517896679095 1.17111430754412 Max fold change below threshold 4 1.88222930398991 Max fold change below threshold PPPPPP No 3 0 PPPP 0 4 0 No No 3 < x
1769397_s_at YLR287C-A.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps30Ap and has similarity to rat S30 ribosomal protein /// Protein component of the small (40S) ribosomal subunit; nearly identical to Rps30Bp and has similarity to rat S30 ribosomal protein 1.88127113363207 2522.13690185547 3274.33227539063 RPS30B /// RPS30A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3665.04663085938 3096.09814453125 1948.17565917969 2883.61791992188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR287C-A /GEN=RPS30A /DB_XREF=GI:6323318 /SEG=NC_001144:-712539,713160 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps30Bp and has similarity to rat S30 ribosomal protein /NOTE=Rps30ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004278 // RPS30A SGDID:S0004278, Chr XII from 713160-713158,712727-712539, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0005708 // RPS30B SGDID:S0005708, Chr XV from 678793-678791,678379-678191, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// U48699 // Saccharomyces cerevisiae ribosomal protein S30 homolog (RPS30A) mRNA, complete cds. // gb // 11 // --- /// U83406 // Saccharomyces cerevisiae ribosomal protein S30 homolog (RPS30B) mRNA, complete cds. // gb // 11 // --- /// YLR287C-A // cdna:known chromosome:SGD1:XII:712539:713160:-1 gene:YLR287C-A // ensembl // 11 // --- /// YOR182C // cdna:known chromosome:SGD1:XV:678191:678793:-1 gene:YOR182C // ensembl // 11 // --- --- No cerevisiae_gene -1.33353897790827 -1.18376306556466 -1.80821069537795 -1.88127113363207 -1.27098899113468 Max fold change below threshold 4 1.88127113363207 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778420_at YIL039W.S1 Hypothetical protein 1.88103971327251 921.928466796875 1514.46484375 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 1478.51879882813 786.011474609375 1057.84545898438 1550.41088867188 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL039W /GEN=CBR1 /DB_XREF=GI:6322150 /SEG=NC_001141:+278425,279846 /DEF=Hypothetical ORF /NOTE=Yil039wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001301 // span:9-27 // numtm:1 S0001301 // YIL039W SGDID:S0001301, Chr IX from 278425-279846, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016447 // cdna:Genscan chromosome:SGD1:IX:278425:279846:1 // ensembl // 11 // --- /// GENEFINDER00000019033 // cdna:GeneFinder chromosome:SGD1:IX:278425:279846:1 // ensembl // 11 // --- /// YIL039W // cdna:known chromosome:SGD1:IX:278425:279846:1 gene:YIL039W // ensembl // 11 // --- --- No cerevisiae_gene -1.05854357406787 -1.88103971327251 1.13784423844533 -1.39766993965984 1.04862440024485 Max fold change below threshold 4 1.88103971327251 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778204_at YLR035C.S1 Protein required for DNA mismatch repair in mitosis and meiosis; involved in the repair of mutational intermediates; forms a complex with Pms1p and Msh1p to repair mismatched DNA 1.8810352714487 248.527366638184 480.449829101563 MLH2 6281 // DNA repair // inferred from direct assay 5634 // nucleus // inferred from physical interaction --- 455.218658447266 255.050415039063 242.004318237305 505.680999755859 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR035C /GEN=MLH2 /DB_XREF=GI:6323063 /SEG=NC_001144:-212370,214457 /DEF=Mutl Homolog /NOTE=Mlh2p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 12200140]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 10679328]; go_process: DNA repair [goid GO:0006281] [evidence IDA] [pmid 10679328] --- --- --- --- --- --- S0004025 // MLH2 SGDID:S0004025, Chr XII from 214457-212370, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017847 // cdna:Genscan chromosome:SGD1:XII:212370:214457:-1 // ensembl // 11 // --- /// GENEFINDER00000024549 // cdna:GeneFinder chromosome:SGD1:XII:212370:214214:-1 // ensembl // 11 // --- /// YLR035C // cdna:known chromosome:SGD1:XII:212370:214457:-1 gene:YLR035C // ensembl // 11 // --- --- No cerevisiae_gene -1.87506084807111 -1.78481834023891 1.22871591759653 -1.8810352714487 1.11085297224134 Max fold change below threshold 4 1.8810352714487 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771902_at YGL066W.S1 Probable 73 kDa subunit of SAGA histone acetyltransferase complex 1.88095030766795 535.490310668945 983.057769775391 SGF73 16573 // histone acetylation // inferred from physical interaction 124 // SAGA complex // inferred from direct assay --- 897.175354003906 476.979827880859 594.000793457031 1068.94018554688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL066W /GEN=SGF73 /DB_XREF=GI:6321372 /SEG=NC_001139:+377610,379583 /DEF=SaGa associated Factor 73kDa /NOTE=Sgf73p; go_component: SAGA complex [goid GO:0000124] [evidence IDA] [pmid 12052880]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: histone acetylation [goid GO:0016573] [evidence IPI] [pmid 12052880] --- --- --- --- --- --- S0003034 // SGF73 SGDID:S0003034, Chr VII from 377612-379585, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021701 // cdna:GeneFinder chromosome:SGD1:VII:377612:379585:1 // ensembl // 11 // --- /// YGL066W // cdna:known chromosome:SGD1:VII:377612:379585:1 gene:YGL066W // ensembl // 11 // --- --- No cerevisiae_gene -1.17299723415224 -1.88095030766795 -1.05541917442017 -1.51039420129799 1.19145067993277 Max fold change below threshold 4 1.88095030766795 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778892_at YJL011C.S1 RNA polymerase III subunit C17; physically interacts with C31, C11, and TFIIIB70; may be involved in the recruitment of pol III by the preinitiation complex 1.88076524415709 135.59073638916 216.819892883301 RPC17 6384 // transcription initiation from RNA polymerase III promoter // inferred from direct assay /// 6384 // transcription initiation from RNA polymerase III promoter // inferred from physical interaction 5666 // DNA-directed RNA polymerase III complex // inferred from direct assay 3899 // DNA-directed RNA polymerase activity // inferred from physical interaction /// 3899 // DNA-directed RNA polymerase activity // inferred from direct assay 209.591278076172 159.742111206055 111.439361572266 224.04850769043 0.000244141003349796 0.000244141003349796 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL011C /GEN=RPC17 /DB_XREF=GI:6322449 /SEG=NC_001142:-414200,414685 /DEF=RNA polymerase III subunit C17; physically interacts with C31, C11, and TFIIIB70; may be involved in the recruitment of pol III by the preinitiation complex /NOTE=Rpc17p; go_component: DNA-directed RNA polymerase III complex [goid GO:0005666] [evidence IDA] [pmid 10611227]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence IDA,IPI] [pmid 10611227]; go_process: transcription initiation from Pol III promoter [goid GO:0006384] [evidence IDA,IPI] [pmid 10611227] --- --- --- --- --- --- S0003548 // RPC17 SGDID:S0003548, Chr X from 414685-414200, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000024127 // cdna:Genscan chromosome:SGD1:X:414200:414685:-1 // ensembl // 10 // --- /// YJL011C // cdna:known chromosome:SGD1:X:414200:414685:-1 gene:YJL011C // ensembl // 10 // --- --- No cerevisiae_gene 1.1902930988818 -1.31206027323513 -1.09233195954584 -1.88076524415709 1.06897820246606 Max fold change below threshold 4 1.88076524415709 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775079_at YER010C.S1 Hypothetical protein 1.88075988766505 385.0966796875 641.849456787109 --- --- --- --- 610.039978027344 324.358245849609 445.835113525391 673.658935546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER010C /GEN=NTF2 /DB_XREF=GI:6320847 /SEG=NC_001137:-172633,173337 /DEF=Hypothetical ORF /NOTE=Yer010cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000812 // YER010C SGDID:S0000812, Chr V from 173337-172633, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016812 // cdna:Genscan chromosome:SGD1:V:172633:173337:-1 // ensembl // 11 // --- /// GENEFINDER00000019733 // cdna:GeneFinder chromosome:SGD1:V:172633:173337:-1 // ensembl // 11 // --- /// YER010C // cdna:known chromosome:SGD1:V:172633:173337:-1 gene:YER010C // ensembl // 11 // --- --- No cerevisiae_gene -1.33944229968376 -1.88075988766505 1.17575402242845 -1.368308505814 1.10428653827779 Max fold change below threshold 4 1.88075988766505 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779236_at YGL237C.S1 Subunit of the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex, a transcriptional activator and global regulator of respiratory gene expression; contains sequences sufficient for both complex assembly and DNA binding 1.88071897132229 648.467559814453 1046.62341308594 HAP2 6109 // regulation of carbohydrate metabolism // traceable author statement /// 6350 // transcription // traceable author statement 5634 // nucleus // inferred from direct assay /// 16602 // CCAAT-binding factor complex // traceable author statement 16563 // transcriptional activator activity // traceable author statement 1010.66467285156 537.382080078125 759.553039550781 1082.58215332031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL237C /GEN=HAP2 /DB_XREF=GI:6321200 /SEG=NC_001139:-52731,53528 /DEF=Subunit of the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex, a transcriptional activator and global regulator of respiratory gene expression; contains sequences sufficient for both complex assembly and DNA binding /NOTE=Hap2p; go_component: CCAAT-binding factor complex [goid GO:0016602] [evidence TAS] [pmid 9618445]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: transcriptional activator activity [goid GO:0016563] [evidence TAS] [pmid 9618445]; go_process: regulation of carbohydrate metabolism [goid GO:0006109] [evidence TAS] [pmid 9618445]; go_process: transcription [goid GO:0006350] [evidence TAS] [pmid 9618445] --- --- --- --- --- --- S0003206 // HAP2 SGDID:S0003206, Chr VII from 53528-52731, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021488 // cdna:GeneFinder chromosome:SGD1:VII:52731:53528:-1 // ensembl // 11 // --- /// YGL237C // cdna:known chromosome:SGD1:VII:52731:53528:-1 gene:YGL237C // ensembl // 11 // --- --- No cerevisiae_gene -1.39036033582128 -1.88071897132229 1.19252044087922 -1.33060447424356 1.07115859730789 Max fold change below threshold 4 1.88071897132229 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774324_at YHR135C.S1 Palmitoylated, plasma membrane-bound casein kinase I isoform; shares redundant functions with Yck2p in morphogenesis, proper septin assembly, endocytic trafficking; provides an essential function overlapping with that of Yck2p 1.87993875018009 1065.57717895508 1855.13555908203 YCK1 902 // cellular morphogenesis // inferred from genetic interaction /// 910 // cytokinesis // inferred from genetic interaction /// 6468 // protein amino acid phosphorylation // inferred from sequence similarity /// 6468 // protein amino acid phosphorylation // inferred from mutant phenotype /// 6897 // endocytosis // inferred from genetic interaction /// 9749 // response to glucose stimulus // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 4681 // casein kinase I activity // inferred from mutant phenotype /// 4681 // casein kinase I activity // inferred from sequence similarity 1910.59228515625 1114.84875488281 1016.30560302734 1799.67883300781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR135C /GEN=YCK1 /DB_XREF=GI:6321927 /SEG=NC_001140:-372695,374311 /DEF=membrane-bound casein kinase I homolog /NOTE=Yck1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11914276]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 8034689]; go_function: casein kinase I activity [goid GO:0004681] [evidence IMP,ISS] [pmid 1729698]; go_process: cellular morphogenesis [goid GO:0000902] [evidence IGI] [pmid 10198058]; go_process: cytokinesis [goid GO:0000910] [evidence IGI] [pmid 10198058]; go_process: endocytosis [goid GO:0006897] [evidence IGI] [pmid 10198058]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IMP,ISS] [pmid 1729698] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-43 /// hanks // 2.1.22 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; RSK2C // 1.0E-49 --- --- S0001177 // YCK1 SGDID:S0001177, Chr VIII from 374312-372696, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016666 // cdna:Genscan chromosome:SGD1:VIII:372696:374306:-1 // ensembl // 11 // --- /// GENEFINDER00000020203 // cdna:GeneFinder chromosome:SGD1:VIII:372696:374312:-1 // ensembl // 11 // --- /// YHR135C // cdna:known chromosome:SGD1:VIII:372696:374312:-1 gene:YHR135C // ensembl // 11 // --- --- No cerevisiae_gene -1.60145170061693 -1.71376814728298 -1.31171541735179 -1.87993875018009 -1.06162958085308 Max fold change below threshold 4 1.87993875018009 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770615_at YBR291C.S1 Mitochondrial inner membrane citrate transporter, member of the mitochondrial carrier family 1.87964955367619 221.967742919922 264.775955200195 CTP1 6843 // mitochondrial citrate transport // inferred from direct assay /// 6843 // mitochondrial citrate transport // inferred from sequence similarity 5743 // mitochondrial inner membrane // inferred from sequence similarity 5371 // tricarboxylate carrier activity // inferred from direct assay 217.826995849609 211.771530151367 232.163955688477 311.724914550781 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR291C /GEN=CTP1 /DB_XREF=GI:6319768 /SEG=NC_001134:-783631,784530 /DEF=Mitochondrial inner membrane citrate transporter, member of the mitochondrial carrier family /NOTE=Ctp1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence ISS] [pmid 7876161]; go_function: tricarboxylate carrier activity [goid GO:0005371] [evidence IDA] [pmid 7876161]; go_process: mitochondrial citrate transport [goid GO:0006843] [evidence IDA,ISS] [pmid 7876161] --- --- --- --- --- --- S0000495 // CTP1 SGDID:S0000495, Chr II from 784568-783669, reverse complement, Verified ORF // sgd // 10 // --- /// U17503 // Saccharomyces cerevisiae mitochondrial citrate transport protein mRNA, complete cds. // gb // 10 // --- /// GENSCAN00000021371 // cdna:Genscan chromosome:SGD1:II:783669:784568:-1 // ensembl // 10 // --- /// GENEFINDER00000022265 // cdna:GeneFinder chromosome:SGD1:II:783669:784568:-1 // ensembl // 10 // --- /// YBR291C // cdna:known chromosome:SGD1:II:783669:784568:-1 gene:YBR291C // ensembl // 10 // --- --- No cerevisiae_gene 1.85388795216423 -1.02859433321332 1.87964955367619 1.0658181038716 1.43106649079437 Max fold change below threshold 4 1.87964955367619 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770489_at YER040W.S1 Transcriptional activator of genes regulated by nitrogen catabolite repression (NCR), localization and activity regulated by quality of nitrogen source 1.87954615507429 347.533920288086 436.091461181641 GLN3 6807 // nitrogen compound metabolism // inferred from physical interaction /// 6808 // regulation of nitrogen utilization // inferred from genetic interaction /// 6808 // regulation of nitrogen utilization // inferred from mutant phenotype /// 45941 // positive regulation of transcription // inferred from direct assay /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // traceable author statement /// 5829 // cytosol // inferred from direct assay 3700 // transcription factor activity // inferred from direct assay /// 16563 // transcriptional activator activity // traceable author statement /// 16563 // transcriptional activator activity // inferred from direct assay 426.824554443359 357.675384521484 337.392456054688 445.358367919922 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER040W /GEN=GLN3 /DB_XREF=GI:6320879 /SEG=NC_001137:+229794,231986 /DEF=Responsible for nitrogen catabolite repression (NCR)-sensitive transcription; during nitrogen starvation, Gln3 is nuclear; under excess nitrogen, Gln3 is cytoplasmic; also regulates glutamine-repressible gene products /NOTE=Gln3p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 12140287]; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 12062797]; go_function: transcription factor activity [goid GO:0003700] [evidence IDA] [pmid 8655543]; go_function: transcriptional activator activity [goid GO:0016563] [evidence TAS] [pmid 12140287]; go_process: nitrogen metabolism [goid GO:0006807] [evidence IPI] [pmid 8655543]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IDA] [pmid 8655543]; go_process: regulation of nitrogen utilization [goid GO:0006808] [evidence IGI,IMP] [pmid 12489124] --- --- --- --- --- --- S0000842 // GLN3 SGDID:S0000842, Chr V from 229794-231986, Verified ORF // sgd // 11 // --- /// GENSCAN00000016838 // cdna:Genscan chromosome:SGD1:V:229794:231986:1 // ensembl // 11 // --- /// GENEFINDER00000019644 // cdna:GeneFinder chromosome:SGD1:V:229794:231986:1 // ensembl // 11 // --- /// YER040W // cdna:known chromosome:SGD1:V:229794:231986:1 gene:YER040W // ensembl // 11 // --- --- No cerevisiae_gene 1.87954615507429 -1.19332940681503 1.20412275339948 -1.26506845895267 1.04342255684126 Max fold change below threshold 4 1.87954615507429 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777243_at SPAC14C4.04.S1 --- 1.87945352583125 --- --- --- --- 11.5131120681763 16.0831909179688 21.6383590698242 6.5631251335144 0.0561522990465164 0.0375977009534836 0.0239257998764515 0.171387001872063 M P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC14C4.04 /GEN=B22918-2 /DEF=hypothetical protein --- --- --- --- --- --- SPAC14C4.04 // |B22918-2||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.38424658641602 1.39694557151274 1.17787795324084 1.87945352583125 -1.75421187832987 Max fold change below threshold 4 1.87945352583125 Max fold change below threshold MAPAPA No 4 0 MPPA 1 2 1 No No 1 < x = 2
1776443_at SPAP8A3.08.S1 --- 1.87864411207926 --- --- --- --- 11.0129718780518 15.399395942688 16.7701473236084 6.06455326080322 0.0952147990465164 0.030273400247097 0.0239257998764515 0.0375977009534836 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP8A3.08 /GEN=cdc4 /DEF=EF hand --- --- --- --- --- --- SPAP8A3.08 // |cdc4||myosin II light chain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.20716256421187 1.39829612871146 -1.87864411207926 1.52276311147497 -1.81595764839456 Max fold change below threshold 4 1.87864411207926 Max fold change below threshold APPPPP No 4 0 APPP 1 3 0 No No 2 < x = 3
1771579_at YOL127W.S1 Primary rRNA-binding ribosomal protein component of the large (60S) ribosomal subunit, has similarity to E. coli L23 and rat L23a ribosomal proteins; binds to 26S rRNA via a conserved C-terminal motif 1.87751458467317 3031.75732421875 4828.01953125 RPL25 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3723 // RNA binding // inferred from direct assay /// 3735 // structural constituent of ribosome // traceable author statement 5446.046875 3162.84643554688 2900.66821289063 4209.9921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL127W /GEN=RPL25 /DB_XREF=GI:6324445 /SEG=NC_001147:+80347,81189 /DEF=Protein compoent of the large (60S) ribosomal subunit, has similarity to E. coli L23 and rat L23a ribosomal proteins; binds to 26S rRNA via a conserved C-terminal motif /NOTE=Rpl25p; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 8028007]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 8028007] --- --- --- --- --- --- S0005487 // RPL25 SGDID:S0005487, Chr XV from 80347-80359,80774-81189, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022577 // cdna:GeneFinder chromosome:SGD1:XV:80409:81189:1 // ensembl // 10 // --- /// YOL127W // cdna:known chromosome:SGD1:XV:80347:81189:1 gene:YOL127W // ensembl // 11 // --- GENSCAN00000017365 // ensembl // 3 // Cross Hyb Matching Probes No cerevisiae_gene -1.05177511682116 -1.72188153487077 -1.66745525728115 -1.87751458467317 -1.29360023307644 Max fold change below threshold 4 1.87751458467317 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769320_at YPR003C.S1 Hypothetical protein 1.87725141220708 422.577896118164 737.637420654297 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 717.074462890625 463.174743652344 381.981048583984 758.200378417969 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR003C /GEN=PDH1 /DB_XREF=GI:6325260 /SEG=NC_001148:-561499,563763 /DEF=Hypothetical ORF /NOTE=Ypr003cp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0006207 // span:152-174,204-226,233-255,282-304,317-336,371-390,411-433,443-465,470-492,507-538 // numtm:10 S0006207 // YPR003C SGDID:S0006207, Chr XVI from 563765-561501, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017187 // cdna:Genscan chromosome:SGD1:XVI:561501:563729:-1 // ensembl // 11 // --- /// GENEFINDER00000020867 // cdna:GeneFinder chromosome:SGD1:XVI:561501:563729:-1 // ensembl // 11 // --- /// YPR003C // cdna:known chromosome:SGD1:XVI:561501:563765:-1 gene:YPR003C // ensembl // 11 // --- --- No cerevisiae_gene -1.24656864773558 -1.54817263401749 -1.11810940591836 -1.87725141220708 1.05735236388361 Max fold change below threshold 4 1.87725141220708 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778888_at YIL144W.S1 Component of the evolutionarily conserved kinetochore-associated Ndc80 complex (Ndc80p-Nuf2p-Spc24p-Spc25p); conserved coiled-coil protein involved in chromosome segregation, spindle checkpoint activity, kinetochore assembly and clustering 1.87721759661505 97.2733879089355 150.362281799316 TID3 7020 // microtubule nucleation // inferred from physical interaction /// 7059 // chromosome segregation // inferred from mutant phenotype /// 7059 // chromosome segregation // inferred from genetic interaction 778 // condensed nuclear chromosome kinetochore // inferred from mutant phenotype /// 778 // condensed nuclear chromosome kinetochore // inferred from physical interaction /// 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 780 // condensed nuclear chromosome, pericentric region // inferred from direct assay /// 780 // condensed nuclear chromosome, pericentric region // inferred from genetic interaction /// 780 // condensed nuclear chromosome, pericentric region // inferred from physical interaction /// 31262 // Ndc80 complex // inferred from direct assay /// 31262 // Ndc80 complex // inferred from physical interaction 5200 // structural constituent of cytoskeleton // inferred from physical interaction 161.798904418945 94.6159439086914 99.9308319091797 138.925659179688 0.0107421996071935 0.00805663969367743 0.00122069998178631 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL144W /GEN=TID3 /DB_XREF=GI:6322047 /SEG=NC_001141:+78074,80149 /DEF=Product of gene unknown /NOTE=Tid3p; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IMP,IPI] [pmid 11179222]; go_component: condensed nuclear chromosome, pericentric region [goid GO:0000780] [evidence IDA,IGI,IPI] [pmid 11266451]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9585415]; go_process: chromosome segregation [goid GO:0007059] [evidence IGI,IMP] [pmid 11266451]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752] --- --- --- --- scop // a.2.7.Seryl-tRNA synthetase (SerRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) // 2.09999990463257 --- S0001406 // TID3 SGDID:S0001406, Chr IX from 78074-80149, Verified ORF // sgd // 11 // --- /// GENSCAN00000016366 // cdna:Genscan chromosome:SGD1:IX:78074:80149:1 // ensembl // 11 // --- /// YIL144W // cdna:known chromosome:SGD1:IX:78074:80149:1 gene:YIL144W // ensembl // 11 // --- --- No cerevisiae_gene 1.87721759661505 -1.71005961294524 1.23350971594412 -1.61910895093912 -1.16464377692585 Max fold change below threshold 4 1.87721759661505 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1769963_at SPAC664.09.S1 --- 1.8771637850508 --- --- --- --- 12.7839202880859 11.3209285736084 9.16475582122803 6.81023168563843 0.0375977009534836 0.149657994508743 0.030273400247097 0.0375977009534836 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC664.09 /DEF=gamma-glutamyltranspeptidase (PMID 15052323) --- --- --- --- --- --- SPAC664.09 // |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.10776559939231 -1.12922895016652 -1.34810299393465 -1.39490026111497 -1.8771637850508 Max fold change below threshold 4 1.8771637850508 Max fold change below threshold PPAAPP No 4 0 PAPP 1 3 0 No No 2 < x = 3
1780181_at SPAC3F10.02c.S1 --- 1.8771326989379 --- --- --- --- 5.03814363479614 8.5827522277832 4.21406841278076 2.80357098579407 0.0375977009534836 0.0461426004767418 0.194580003619194 0.0805663987994194 P P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3F10.02c /GEN=trk1 /DEF=potassium ion transporter activity (PMID 7642145) --- --- --- --- --- --- SPAC3F10.02c // |trk1|sptrk|potassium ion transporter Trk1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.8771326989379 1.70355449346582 -1.29957112289395 -1.1955533563518 -1.79704514718009 Max fold change below threshold 4 1.8771326989379 Max fold change below threshold PAPAAA No 4 0 PPAA 2 2 0 No No 1 < x = 2
1770668_at YJR079W.S1 Tryptophan 2,3-dioxygenase, required for biosynthesis of nicotinic acid from tryptophan via kynurenine pathway /// Hypothetical protein 1.87697867570971 52.3599834442139 75.9616165161133 BNA2 9435 // NAD biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4833 // tryptophan 2,3-dioxygenase activity // traceable author statement 74.4041137695313 39.6403617858887 65.0796051025391 77.5191192626953 0.00292969006113708 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR079W /GEN=BNA2 /DB_XREF=GI:6322539 /SEG=NC_001142:+580119,581153 /DEF=Hypothetical ORF /NOTE=Yjr079wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.Plant O-methyltransferase, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Plant O-methyltransferase, N-terminal domain // 0.430000007152557 --- S0003840 // YJR079W SGDID:S0003840, Chr X from 580119-580261,580967-581153, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YJR079W // cdna:known chromosome:SGD1:X:580119:581153:1 gene:YJR079W // ensembl // 11 // --- S0003841 // sgd // 8 // Negative Strand Matching Probes /// GENSCAN00000024197 // ensembl // 8 // Negative Strand Matching Probes /// YJR080C // ensembl // 8 // Negative Strand Matching Probes No cerevisiae_gene 1.68904666142209 -1.87697867570971 1.53577106355262 -1.14327850718056 1.04186603852057 Max fold change below threshold 4 1.87697867570971 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772855_at YNL249C.S1 Mitochondrial protein of unknown function 1.87695604593071 138.526840209961 123.744564056396 MPA43 --- 5739 // mitochondrion // inferred from direct assay --- 115.442100524902 132.121185302734 144.932495117188 132.047027587891 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL249C /GEN=MPA43 /DB_XREF=GI:6324080 /SEG=NC_001146:-179393,181021 /DEF=Overexpression leads to increased levels of the lyase PDC1 /NOTE=Mpa43p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005193 // MPA43 SGDID:S0005193, Chr XIV from 181021-179393, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019841 // cdna:Genscan chromosome:SGD1:XIV:179393:181021:-1 // ensembl // 11 // --- /// GENEFINDER00000020512 // cdna:GeneFinder chromosome:SGD1:XIV:179393:180925:-1 // ensembl // 11 // --- /// YNL249C // cdna:known chromosome:SGD1:XIV:179393:181021:-1 gene:YNL249C // ensembl // 11 // --- --- No cerevisiae_gene -1.03443238843922 1.14448008743772 1.87695604593071 1.25545615038357 1.14383770727913 Max fold change below threshold 4 1.87695604593071 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780129_at YFR031C.S1 Component of the condensin complex, essential SMC chromosomal ATPase family member that forms a complex with Smc4p to form the active ATPase; Smc2p/Smc4p complex binds DNA, possibly in the cleft formed by the coiled-coil of the folded dimer 1.87637130529234 564.041870117188 945.187652587891 SMC2 70 // mitotic sister chromatid segregation // traceable author statement /// 7076 // mitotic chromosome condensation // inferred from mutant phenotype /// 7076 // mitotic chromosome condensation // traceable author statement 799 // nuclear condensin complex // inferred from physical interaction /// 799 // nuclear condensin complex // inferred from sequence similarity /// 799 // nuclear condensin complex // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 217 // DNA secondary structure binding // inferred from direct assay /// 3680 // AT DNA binding // inferred from direct assay /// 3690 // double-stranded DNA binding // inferred from direct assay /// 16887 // ATPase activity // inferred from direct assay 904.540954589844 573.679016113281 554.404724121094 985.834350585938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR031C /GEN=SMC2 /DB_XREF=GI:14318554 /SEG=NC_001138:-216582,220094 /DEF=Chromosome segregation and condensation /NOTE=Smc2p; go_component: nuclear condensin complex [goid GO:0000799] [evidence IPI,ISS] [pmid 7698648]; go_component: nuclear condensin complex [goid GO:0000799] [evidence TAS] [pmid 9887095]; go_function: AT DNA binding [goid GO:0003680] [evidence IDA] [pmid 9727028]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 9727028]; go_function: DNA secondary structure binding [goid GO:0000217] [evidence IDA] [pmid 9727028]; go_function: double-stranded DNA binding [goid GO:0003690] [evidence IDA] [pmid 9727028]; go_process: mitotic chromosome condensation [goid GO:0007076] [evidence IMP] [pmid 7698648]; go_process: mitotic chromosome condensation [goid GO:0007076] [evidence TAS] [pmid 9887095]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence TAS] [pmid 9887095] --- --- --- --- scop // a.2.7.Seryl-tRNA synthetase (SerRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) // 0.300000011920929 /// scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 9.30000019073486 /// scop // a.4.5.DNA-binding protein Mj223 // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; DNA-binding protein Mj223 // 9.5 --- S0001927 // SMC2 SGDID:S0001927, Chr VI from 220094-216582, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018597 // cdna:GeneFinder chromosome:SGD1:VI:216582:219629:-1 // ensembl // 11 // --- /// GENSCAN00000023272 // cdna:Genscan chromosome:SGD1:VI:216582:220094:-1 // ensembl // 11 // --- /// YFR031C // cdna:known chromosome:SGD1:VI:216582:220094:-1 gene:YFR031C // ensembl // 11 // --- --- No cerevisiae_gene -1.87637130529234 -1.57673704141765 -1.06265696957459 -1.63155347571005 1.08987254317629 Max fold change below threshold 4 1.87637130529234 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773339_at YKR018C.S1 Hypothetical protein 1.87632317218939 3139.98266601563 1735.77960205078 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1676.39172363281 3134.5126953125 3145.45263671875 1795.16748046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR018C /GEN=YPT52 /DB_XREF=GI:6322870 /SEG=NC_001143:-473366,475543 /DEF=Hypothetical ORF /NOTE=Ykr018cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.C-terminal fragment of elongation factor SelB // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; C-terminal fragment of elongation factor SelB // 7.80000019073486 --- S0001726 // YKR018C SGDID:S0001726, Chr XI from 475543-473366, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018432 // cdna:Genscan chromosome:SGD1:XI:473366:475543:-1 // ensembl // 11 // --- /// GENEFINDER00000023132 // cdna:GeneFinder chromosome:SGD1:XI:473366:475543:-1 // ensembl // 11 // --- /// YKR018C // cdna:known chromosome:SGD1:XI:473366:475543:-1 gene:YKR018C // ensembl // 11 // --- --- No cerevisiae_gene -1.29728442200802 1.86979728611394 1.51349919802671 1.87632317218939 1.07085203008432 Max fold change below threshold 4 1.87632317218939 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772573_at YBR096W.S1 Hypothetical protein 1.87610082690985 642.368682861328 1264.314453125 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 1174.23071289063 625.888916015625 658.848449707031 1354.39819335938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR096W /GEN=PHO5 /DB_XREF=GI:6319572 /SEG=NC_001134:+435978,436670 /DEF=Hypothetical ORF /NOTE=Ybr096wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000300 // YBR096W SGDID:S0000300, Chr II from 436015-436707, Uncharacterized ORF // sgd // 11 // --- /// YBR096W // cdna:known chromosome:SGD1:II:436015:436707:1 gene:YBR096W // ensembl // 11 // --- GENEFINDER00000022337 // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene 1.27874113058978 -1.87610082690985 -1.32656359581788 -1.78224706062945 1.15343448139355 Max fold change below threshold 4 1.87610082690985 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775471_at YBR253W.S1 Protein involved in transcription as part of the Srb/Mediator complex 1.87594632130191 502.0341796875 868.781555175781 SRB6 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from direct assay 879.093017578125 535.455261230469 468.613098144531 858.470092773438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR253W /GEN=SRB6 /DB_XREF=GI:6319730 /SEG=NC_001134:+723227,723592 /DEF=involved in transcription as part of Srb/Mediator complex /NOTE=Srb6p; go_component: mediator complex [goid GO:0000119] [evidence IDA] [pmid 9420330]; go_function: RNA polymerase II transcription mediator activity [goid GO:0016455] [evidence IDA] [pmid 9420330]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IDA] [pmid 9420330] --- --- --- --- --- --- S0000457 // SRB6 SGDID:S0000457, Chr II from 723265-723630, Verified ORF // sgd // 11 // --- /// GENSCAN00000021342 // cdna:Genscan chromosome:SGD1:II:723265:723630:1 // ensembl // 11 // --- /// YBR253W // cdna:known chromosome:SGD1:II:723265:723630:1 gene:YBR253W // ensembl // 11 // --- GENEFINDER00000022347 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 1.13847647652652 -1.64176744768178 -1.03295731873711 -1.87594632130191 -1.02402288091139 Max fold change below threshold 4 1.87594632130191 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773337_at YFR044C.S1 Hypothetical protein 1.87591248282956 3691.37670898438 5953.34252929688 --- --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 6679.57568359375 3560.70751953125 3822.0458984375 5227.109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR044C /GEN=ERJ5 /DB_XREF=GI:14318569 /SEG=NC_001138:-239979,241424 /DEF=Hypothetical ORF /NOTE=Yfr044cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001940 // YFR044C SGDID:S0001940, Chr VI from 241424-239979, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENEFINDER00000018546 // cdna:GeneFinder chromosome:SGD1:VI:239979:241424:-1 // ensembl // 10 // --- /// GENSCAN00000023280 // cdna:Genscan chromosome:SGD1:VI:239979:241424:-1 // ensembl // 10 // --- /// YFR044C // cdna:known chromosome:SGD1:VI:239979:241424:-1 gene:YFR044C // ensembl // 10 // --- --- No cerevisiae_gene -1.48466332307943 -1.87591248282956 -1.28514983566623 -1.74764402654726 -1.27787180339875 Max fold change below threshold 4 1.87591248282956 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777725_at YDR357C.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.87571143949276 250.230056762695 170.491706848145 --- --- 5737 // cytoplasm // inferred from direct assay --- 159.882385253906 299.893218994141 200.56689453125 181.101028442383 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR357C /GEN=SPC110 /DB_XREF=GI:6320564 /SEG=NC_001136:-1189188,1189556 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ydr357cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002765 // YDR357C SGDID:S0002765, Chr IV from 1189558-1189190, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDR357C // cdna:known chromosome:SGD1:IV:1189190:1189558:-1 gene:YDR357C // ensembl // 11 // --- --- No cerevisiae_gene -1.71003315110805 1.87571143949276 1.29192506393364 1.25446523838591 1.13271407700592 Max fold change below threshold 4 1.87571143949276 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777692_at YMR270C.S1 Upstream activation factor subunit 1.87568858583692 178.993293762207 357.074508666992 RRN9 6360 // transcription from RNA polymerase I promoter // traceable author statement 500 // RNA polymerase I upstream activating factor complex // traceable author statement 182 // ribosomal DNA (rDNA) binding // traceable author statement /// 3701 // RNA polymerase I transcription factor activity // traceable author statement 331.087341308594 176.515090942383 181.471496582031 383.061676025391 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR270C /GEN=RRN9 /DB_XREF=GI:6323926 /SEG=NC_001145:-805325,806422 /DEF=Upstream activation factor subunit /NOTE=Rrn9p; go_component: RNA polymerase I upstream activating factor complex [goid GO:0000500] [evidence TAS] [pmid 11500378]; go_function: RNA polymerase I transcription factor activity [goid GO:0003701] [evidence TAS] [pmid 9932458]; go_function: ribosomal DNA (rDNA) binding [goid GO:0000182] [evidence TAS] [pmid 11500378]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS] [pmid 9932458] --- --- --- --- --- --- S0004883 // RRN9 SGDID:S0004883, Chr XIII from 806422-805325, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018940 // cdna:Genscan chromosome:SGD1:XIII:805325:806422:-1 // ensembl // 11 // --- /// GENEFINDER00000021793 // cdna:GeneFinder chromosome:SGD1:XIII:805325:806023:-1 // ensembl // 11 // --- /// YMR270C // cdna:known chromosome:SGD1:XIII:805325:806422:-1 gene:YMR270C // ensembl // 11 // --- --- No cerevisiae_gene 1.04873661982087 -1.87568858583692 1.06963205141086 -1.82445919907279 1.1569807365977 Max fold change below threshold 4 1.87568858583692 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779061_at YLR257W.S1 Hypothetical protein 1.87517918998139 3533.30554199219 1984.25177001953 --- --- 5737 // cytoplasm // inferred from direct assay --- 1948.07385253906 3652.98754882813 3413.62353515625 2020.4296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR257W /GEN=HAP1 /DB_XREF=GI:6323286 /SEG=NC_001144:+658828,659793 /DEF=Hypothetical ORF /NOTE=Ylr257wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004247 // YLR257W SGDID:S0004247, Chr XII from 658828-659793, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018020 // cdna:Genscan chromosome:SGD1:XII:658828:659793:1 // ensembl // 11 // --- /// GENEFINDER00000024694 // cdna:GeneFinder chromosome:SGD1:XII:658828:659793:1 // ensembl // 11 // --- /// YLR257W // cdna:known chromosome:SGD1:XII:658828:659793:1 gene:YLR257W // ensembl // 11 // --- --- No cerevisiae_gene 1.18283265201924 1.87517918998139 -1.04012091733557 1.75230704457484 1.03714224430795 Max fold change below threshold 4 1.87517918998139 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780188_at YBR008C.S1 Plasma membrane multidrug transporter, member of the major facilitator superfamily; involved in efflux of fluconazole, diazaborine, benomyl, methotrexate, and other drugs 1.87515890961871 429.468124389648 620.717468261719 FLR1 9636 // response to toxin // inferred from genetic interaction /// 9636 // response to toxin // inferred from mutant phenotype 5887 // integral to plasma membrane // inferred from direct assay 15239 // multidrug transporter activity // inferred from genetic interaction /// 15239 // multidrug transporter activity // inferred from sequence similarity /// 15239 // multidrug transporter activity // inferred from mutant phenotype 614.846740722656 327.890472412109 531.045776367188 626.588195800781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR008C /GEN=FLR1 /DB_XREF=GI:6319480 /SEG=NC_001134:-252526,254172 /DEF=Plasma membrane multidrug transporter, member of the major facilitator superfamily; involved in efflux of fluconazole, diazaborine, benomyl, methotrexate, and other drugs /NOTE=Flr1p; go_component: integral to plasma membrane [goid GO:0005887] [evidence IDA] [pmid 10903515]; go_function: multidrug transporter activity [goid GO:0015239] [evidence ISS] [pmid 9046086]; go_function: multidrug transporter activity [goid GO:0015239] [evidence IGI,IMP] [pmid 9235926]; go_process: response to toxin [goid GO:0009636] [evidence IGI,IMP] [pmid 9235926] --- --- --- --- --- S0000212 // span:104-126,136-158,171-193,198-220,227-249,259-281,339-361,376-398,415-437,447-469,474-496,511-533 // numtm:12 S0000212 // FLR1 SGDID:S0000212, Chr II from 254210-252564, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022385 // cdna:GeneFinder chromosome:SGD1:II:252564:254210:-1 // ensembl // 11 // --- /// YBR008C // cdna:known chromosome:SGD1:II:252564:254210:-1 gene:YBR008C // ensembl // 11 // --- --- No cerevisiae_gene -1.23460719396387 -1.87515890961871 1.357321463156 -1.15780365475975 1.01909655577636 Max fold change below threshold 4 1.87515890961871 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773163_at SPBC1271.07c.S1 --- 1.87462348361873 --- --- --- --- 3.39571475982666 2.10198569297791 1.8114116191864 2.86444187164307 0.303710997104645 0.5 0.303710997104645 0.432372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1271.07c /DEF=N-acetyltransferase (predicted) --- --- --- --- --- --- SPBC1271.07c // |||N-acetyltransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.08073125435124 -1.61547948264858 1.49599260250543 -1.87462348361873 -1.18547169465822 Max fold change below threshold 2 1.87462348361873 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769341_at YER087C-B.S1 Beta subunit of the Sec61p ER translocation complex (Sec61p-Sss1p-Sbh1p); involved in protein translocation into the endoplasmic reticulum; homologous to Sbh2p 1.87438691262798 823.080230712891 1482.10717773438 SBH1 6613 // cotranslational protein-membrane targeting // traceable author statement /// 6613 // cotranslational protein-membrane targeting // inferred from direct assay /// 6616 // SRP-dependent cotranslational protein-membrane targeting, translocation // traceable author statement /// 31204 // posttranslational protein membrane targeting, translocation // traceable author statement 5784 // translocon complex // traceable author statement /// 5784 // translocon complex // inferred from direct assay /// 31206 // Sec complex-associated translocon complex // traceable author statement 5086 // ARF guanyl-nucleotide exchange factor activity // inferred from direct assay /// 8565 // protein transporter activity // traceable author statement 1515.16381835938 837.808776855469 808.351684570313 1449.05053710938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER087C-B /GEN=SBH1 /DB_XREF=GI:6320932 /SEG=NC_001137:-332578,332826 /DEF=Beta subunit of the Sec61p ER translocation complex (Sec61p-Sss1p-Sbh1p); involved in protein translocation into the endoplasmic reticulum /NOTE=Sbh1p; go_component: translocon [goid GO:0005784] [evidence TAS] [pmid 10921929]; go_function: protein transporter activity [goid GO:0008565] [evidence TAS] [pmid 10921929]; go_process: cotranslational membrane targeting [goid GO:0006613] [evidence TAS] [pmid 10921929] --- --- --- --- --- CAA87710.1 // span:55-74 // numtm:1 /// S0002128 // span:55-74 // numtm:1 S0002128 // SBH1 SGDID:S0002128, Chr V from 332826-332578, reverse complement, Verified ORF // sgd // 11 // --- /// Z47789 // S.cerevisiae mRNA for Sec61 beta 1. // gb // 11 // --- /// YER087C-B // cdna:known chromosome:SGD1:V:332578:332826:-1 gene:YER087C-B // ensembl // 11 // --- --- No cerevisiae_gene 1.15065376690813 -1.80848406010523 -1.02294210755601 -1.87438691262798 -1.04562524187865 Max fold change below threshold 4 1.87438691262798 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773850_at YNL177C.S1 Mitochondrial ribosomal protein of the large subunit 1.87428309640408 207.037696838379 364.049957275391 MRPL22 6412 // protein biosynthesis // inferred from curator /// 9060 // aerobic respiration // inferred from expression pattern /// 9060 // aerobic respiration // inferred from mutant phenotype 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction /// 5762 // mitochondrial large ribosomal subunit // inferred from sequence similarity 3735 // structural constituent of ribosome // inferred from physical interaction /// 3735 // structural constituent of ribosome // inferred from sequence similarity 345.341979980469 184.252838134766 229.822555541992 382.757934570313 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL177C /GEN=MRPL22 /DB_XREF=GI:6324152 /SEG=NC_001146:-303686,304615 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl22p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence ISS] [pmid 10929718]; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence ISS] [pmid 10929718]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IPI] [pmid 12392552]; go_process: aerobic respiration [goid GO:0009060] [evidence IEP,IMP] [pmid 10929718]; go_process: protein biosynthesis [goid GO:0006412] [evidence IC] [pmid 12392552] --- --- --- --- --- --- S0005121 // MRPL22 SGDID:S0005121, Chr XIV from 304615-303686, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019898 // cdna:Genscan chromosome:SGD1:XIV:303686:304615:-1 // ensembl // 11 // --- /// YNL177C // cdna:known chromosome:SGD1:XIV:303686:304615:-1 gene:YNL177C // ensembl // 11 // --- --- No cerevisiae_gene -1.31379946369068 -1.87428309640408 1.00646720806323 -1.5026461574498 1.10834464605768 Max fold change below threshold 4 1.87428309640408 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777231_at SPBP23A10.08.S1 --- 1.8742763531107 --- --- --- --- 0.498716920614243 0.587159991264343 0.537290930747986 0.449143946170807 0.932372987270355 0.953857004642487 0.981445014476776 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP23A10.08 /GEN=alp5 /DEF=actin-like protein --- --- --- --- --- --- SPBP23A10.08 // |alp5||actin-like protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.8742763531107 1.17734122704554 1.016161130975 1.07734650367634 -1.11037213095283 Max fold change below threshold 0 1.8742763531107 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774720_at YNL124W.S1 Protein required for the assembly of box H/ACA snoRNPs and for pre-rRNA processing, forms a complex with Shq1p and interacts with H/ACA snoRNP components Nhp2p and Cbf5p; has similarity to Gar1p and other RNA-binding proteins 1.87415821209826 255.193115234375 328.717636108398 NAF1 6810 // transport // inferred from mutant phenotype /// 16074 // snoRNA metabolism // inferred from mutant phenotype 5654 // nucleoplasm // traceable author statement 3723 // RNA binding // inferred from direct assay /// 5215 // transporter activity // inferred from mutant phenotype 228.740112304688 198.764862060547 311.621368408203 428.695159912109 0.00415039015933871 0.0375977009534836 0.0107421996071935 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL124W /GEN=NAF1 /DB_XREF=GI:6324205 /SEG=NC_001146:+392892,394370 /DEF=Nuclear Assembly Factor /NOTE=Naf1p; go_component: nucleoplasm [goid GO:0005654] [evidence TAS] [pmid 12242285]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 12515383]; go_function: transporter activity [goid GO:0005215] [evidence IMP] [pmid 12242285]; go_process: snoRNA metabolism [goid GO:0016074] [evidence IMP] [pmid 12515383]; go_process: transport [goid GO:0006810] [evidence IMP] [pmid 12242285] --- --- --- --- --- --- S0005068 // NAF1 SGDID:S0005068, Chr XIV from 392892-394370, Verified ORF // sgd // 11 // --- /// GENSCAN00000019934 // cdna:Genscan chromosome:SGD1:XIV:392892:394370:1 // ensembl // 11 // --- /// GENEFINDER00000020438 // cdna:GeneFinder chromosome:SGD1:XIV:392892:394370:1 // ensembl // 11 // --- /// YNL124W // cdna:known chromosome:SGD1:XIV:392892:394370:1 gene:YNL124W // ensembl // 11 // --- --- No cerevisiae_gene 1.21137848555826 -1.15080759211359 1.32065494954476 1.36233809308057 1.87415821209826 Max fold change below threshold 4 1.87415821209826 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1772478_at SPBC21B10.07.S1 --- 1.87404064179221 --- --- --- --- 4.06003952026367 7.52880430221558 3.53624320030212 3.19808435440063 0.432372987270355 0.366210997104645 0.601073980331421 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21B10.07 /DEF=glycosyl hydrolase family 16 --- --- --- --- --- --- SPBC21B10.07 // |||glycosyl hydrolase family 16|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.87404064179221 1.85436724559928 1.50816487600006 -1.14812225582132 -1.26952233598122 Max fold change below threshold 4 1.87404064179221 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775645_at YLR059C.S1 RNA exonuclease, required for U4 snRNA maturation; functions redundantly with Rnh70p in 5.8S rRNA maturation, and with Rnh70p and Rex3p in processing of U5 snRNA and RNase P RNA; member of RNase D family of exonucleases 1.87377279047236 440.580551147461 351.206924438477 REX2 6396 // RNA processing // inferred from mutant phenotype 5739 // mitochondrion // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from direct assay 8408 // 3'-5' exonuclease activity // inferred from mutant phenotype /// 8408 // 3'-5' exonuclease activity // inferred from sequence similarity 310.4453125 350.892608642578 530.268493652344 391.968536376953 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR059C /GEN=REX2 /DB_XREF=GI:6323088 /SEG=NC_001144:-259739,260548 /DEF=RNA exonuclease /NOTE=Rex2p; go_component: mitochondrion [goid GO:0005739] [evidence IDA,IMP] [pmid 9933355]; go_function: 3'-5' exonuclease activity [goid GO:0008408] [evidence IMP,ISS] [pmid 10716935]; go_process: RNA processing [goid GO:0006396] [evidence IMP] [pmid 10716935] --- --- --- --- --- --- S0004049 // REX2 SGDID:S0004049, Chr XII from 260548-259739, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017866 // cdna:Genscan chromosome:SGD1:XII:259739:260548:-1 // ensembl // 11 // --- /// GENEFINDER00000024912 // cdna:GeneFinder chromosome:SGD1:XII:259739:260548:-1 // ensembl // 11 // --- /// YLR059C // cdna:known chromosome:SGD1:XII:259739:260548:-1 gene:YLR059C // ensembl // 11 // --- --- No cerevisiae_gene 1.87377279047236 1.13028799119838 1.30962484586154 1.70808987058661 1.26260091743841 Max fold change below threshold 4 1.87377279047236 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772346_at YBR223C.S1 Tyrosyl-DNA Phosphodiesterase I, hydrolyzes 3'-phosphotyrosyl bonds to generate 3'-phosphate DNA and tyrosine, involved in the repair of DNA lesions created by topoisomerase I 1.87314631848569 171.839721679688 153.864532470703 TDP1 6281 // DNA repair // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5634 // nucleus // inferred from mutant phenotype 17005 // tyrosyl-DNA phosophodiesterase activity // inferred from direct assay 143.681777954102 120.772201538086 222.907241821289 164.047286987305 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR223C /GEN=TDP1 /DB_XREF=GI:6319701 /SEG=NC_001134:-668620,670254 /DEF=Tyrosine-DNA Phosphodiesterase /NOTE=Tdp1p; go_component: nucleus [goid GO:0005634] [evidence IMP] [pmid 10521354]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12206772]; go_function: tyrosyl-DNA phosophodiesterase activity [goid GO:0017005] [evidence IDA] [pmid 10521354]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 10521354] --- --- --- --- --- --- S0000427 // TDP1 SGDID:S0000427, Chr II from 670292-668658, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021318 // cdna:Genscan chromosome:SGD1:II:668658:670292:-1 // ensembl // 11 // --- /// GENEFINDER00000022187 // cdna:GeneFinder chromosome:SGD1:II:668658:670292:-1 // ensembl // 11 // --- /// YBR223C // cdna:known chromosome:SGD1:II:668658:670292:-1 gene:YBR223C // ensembl // 11 // --- YBR223W-A // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene 1.1261491606761 -1.189692463367 1.87314631848569 1.55139534738007 1.14174037461945 Max fold change below threshold 4 1.87314631848569 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774100_at YGL112C.S1 Subunit (60 kDa) of TFIID and SAGA complexes, involved in transcription initiation of RNA polymerase II and in chromatin modification, similar to histone H4 1.87311699409489 663.313171386719 1155.24383544922 TAF6 114 // G1-specific transcription in mitotic cell cycle // inferred from physical interaction /// 6325 // establishment and/or maintenance of chromatin architecture // inferred from physical interaction /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 6473 // protein amino acid acetylation // inferred from physical interaction /// 16568 // chromatin modification // traceable author statement /// 16573 // histone acetylation // traceable author statement 124 // SAGA complex // inferred from direct assay /// 5669 // transcription factor TFIID complex // traceable author statement /// 5669 // transcription factor TFIID complex // inferred from direct assay /// 46695 // SLIK (SAGA-like) complex // inferred from physical interaction 16251 // general RNA polymerase II transcription factor activity // traceable author statement 1101.47705078125 588.044982910156 738.581359863281 1209.01062011719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL112C /GEN=TAF6 /DB_XREF=GI:6321326 /SEG=NC_001139:-298179,299729 /DEF=Subunit (60 kDa) of TFIID and SAGA complexes, involved in transcription initiation of RNA polymerase II and in chromatin modification, similar to histone H4 /NOTE=Taf6p; go_component: SAGA complex [goid GO:0000124] [evidence IDA] [pmid 9674426]; go_component: transcription factor TFIID complex [goid GO:0005669] [evidence TAS] [pmid 9118213]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9118213]; go_process: G1-specific transcription in mitotic cell cycle [goid GO:0000114] [evidence IPI] [pmid 9118213]; go_process: chromatin modification [goid GO:0016568] [evidence TAS] [pmid 10839822]; go_process: establishment and/or maintenance of chromatin architecture [goid GO:0006325] [evidence IPI] [pmid 9674426]; go_process: histone acetylation [goid GO:0016573] [evidence TAS] [pmid 10839822]; go_process: protein amino acid acetylation [goid GO:0006473] [evidence IPI] [pmid 9674426]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 9118213] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 2.40000009536743 --- S0003080 // TAF6 SGDID:S0003080, Chr VII from 299731-298181, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019267 // cdna:Genscan chromosome:SGD1:VII:298181:299731:-1 // ensembl // 11 // --- /// GENEFINDER00000021699 // cdna:GeneFinder chromosome:SGD1:VII:298181:299731:-1 // ensembl // 11 // --- /// YGL112C // cdna:known chromosome:SGD1:VII:298181:299731:-1 gene:YGL112C // ensembl // 11 // --- --- No cerevisiae_gene -1.13781024016606 -1.87311699409489 1.35090266310552 -1.49134152395228 1.09762669976616 Max fold change below threshold 4 1.87311699409489 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779042_at YKL010C.S1 Ubiquitin-protein ligase (E3) that interacts with Rpt4p and Rpt6p, two subunits of the 19S particle of the 26S proteasome; cytoplasmic E3 involved in the degradation of ubiquitin fusion proteins 1.87283355737411 1110.70611572266 1381.71826171875 UFD4 209 // protein polyubiquitination // traceable author statement /// 6513 // protein monoubiquitination // traceable author statement 5737 // cytoplasm // inferred from physical interaction /// 5739 // mitochondrion // inferred from direct assay 4842 // ubiquitin-protein ligase activity // traceable author statement 1298.74914550781 1151.64819335938 1069.76403808594 1464.68737792969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL010C /GEN=UFD4 /DB_XREF=GI:6322842 /SEG=NC_001143:-421067,425518 /DEF=Ubiquitin-protein ligase (E3) that interacts with Rpt4p and Rpt6p, two subunits of the 19S particle of the 26S proteasome; cytoplasmic E3 involved in the degradation of ubiquitin fusion proteins /NOTE=Ufd4p; go_component: cytoplasm [goid GO:0005737] [evidence IPI] [pmid 10688918]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 8982460]; go_process: protein monoubiquitination [goid GO:0006513] [evidence TAS] [pmid 8982460]; go_process: protein polyubiquitination [goid GO:0000209] [evidence TAS] [pmid 8982460] --- --- --- --- --- --- S0001493 // UFD4 SGDID:S0001493, Chr XI from 425518-421067, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018410 // cdna:Genscan chromosome:SGD1:XI:421067:425518:-1 // ensembl // 11 // --- /// GENEFINDER00000022999 // cdna:GeneFinder chromosome:SGD1:XI:421067:425518:-1 // ensembl // 11 // --- /// YKL010C // cdna:known chromosome:SGD1:XI:421067:425518:-1 gene:YKL010C // ensembl // 11 // --- --- No cerevisiae_gene -1.87283355737411 -1.12773080615821 -1.10924438348326 -1.21405197713655 1.12776773174083 Max fold change below threshold 4 1.87283355737411 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772635_at YNL314W.S1 Positive regulator of allophanate inducible genes; binds a dodecanucleotide sequence upstream of all genes that are induced by allophanate; contains an UISALL DNA-binding, a transcriptional activation, and a coiled-coil domain 1.87185766918818 307.374229431152 392.623733520508 DAL82 256 // allantoin catabolism // inferred from mutant phenotype /// 6367 // transcription initiation from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from direct assay 16563 // transcriptional activator activity // inferred from direct assay 416.264831542969 222.380599975586 392.367858886719 368.982635498047 0.00195312988944352 0.00195312988944352 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL314W /GEN=DAL82 /DB_XREF=GI:6324015 /SEG=NC_001146:+44446,45213 /DEF=Positive regulator of allophanate inducible genes; binds a dodecanucleotide sequence upstream of all genes that are induced by allophanate /NOTE=Dal82p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10702289]; go_function: transcriptional activator activity [goid GO:0016563] [evidence IDA] [pmid 10702289]; go_process: allantoin catabolism [goid GO:0000256] [evidence IMP] [pmid 1898922]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence IDA] [pmid 10702289] --- --- --- --- --- --- S0005258 // DAL82 SGDID:S0005258, Chr XIV from 44446-45213, Verified ORF // sgd // 11 // --- /// GENSCAN00000019791 // cdna:Genscan chromosome:SGD1:XIV:44446:45213:1 // ensembl // 11 // --- /// GENEFINDER00000020653 // cdna:GeneFinder chromosome:SGD1:XIV:44446:45213:1 // ensembl // 11 // --- /// YNL314W // cdna:known chromosome:SGD1:XIV:44446:45213:1 gene:YNL314W // ensembl // 11 // --- --- No cerevisiae_gene -1.67645685892345 -1.87185766918818 1.05313256451571 -1.06090451120042 -1.12814206278597 Max fold change below threshold 4 1.87185766918818 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780047_at YPL203W.S1 Subunit of cytoplasmic cAMP-dependent protein kinase, which contains redundant catalytic subunits Tpk1p, Tpk2p, and Tpk3p and regulatory subunit Bcy1p; promotes vegetative growth in response to nutrients; activates filamentous growth 1.87165788086781 2472.79541015625 3223.41931152344 TPK2 6468 // protein amino acid phosphorylation // traceable author statement /// 7124 // pseudohyphal growth // inferred from mutant phenotype /// 7265 // Ras protein signal transduction // traceable author statement 5737 // cytoplasm // traceable author statement /// 5952 // cAMP-dependent protein kinase complex // traceable author statement /// 5952 // cAMP-dependent protein kinase complex // inferred from sequence similarity /// 5952 // cAMP-dependent protein kinase complex // inferred from mutant phenotype 4674 // protein serine/threonine kinase activity // traceable author statement /// 4691 // cAMP-dependent protein kinase activity // traceable author statement 3293.86791992188 2384.46875 2561.1220703125 3152.970703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL203W /GEN=TPK2 /DB_XREF=GI:6325053 /SEG=NC_001148:+166255,167397 /DEF=Involved in nutrient control of cell growth and division /NOTE=Tpk2p; go_component: cAMP-dependent protein kinase complex [goid GO:0005952] [evidence TAS] [pmid 7826397]; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 7826397]; go_function: cAMP-dependent protein kinase activity [goid GO:0004691] [evidence TAS] [pmid 2558053]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence TAS] [pmid 2558053]; go_process: RAS protein signal transduction [goid GO:0007265] [evidence TAS] [pmid 8090204]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 2558053]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 10373537] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-73 /// hanks // 1.1.13 // AGC group; AGC I Cyclic nucleotide regulated protein kinase (PKA & PKG); TPK2 // 1.0E-147 --- --- S0006124 // TPK2 SGDID:S0006124, Chr XVI from 166255-167397, Verified ORF // sgd // 11 // --- /// GENSCAN00000017032 // cdna:Genscan chromosome:SGD1:XVI:166255:167397:1 // ensembl // 11 // --- /// GENEFINDER00000020851 // cdna:GeneFinder chromosome:SGD1:XVI:166255:167397:1 // ensembl // 11 // --- /// YPL203W // cdna:known chromosome:SGD1:XVI:166255:167397:1 gene:YPL203W // ensembl // 11 // --- --- No cerevisiae_gene -1.87165788086781 -1.38138439428987 1.02841483897895 -1.28610344586971 -1.04468713161757 Max fold change below threshold 4 1.87165788086781 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779373_at YPL144W.S1 Hypothetical protein 1.87153951725259 374.374725341797 620.618255615234 --- --- 5737 // cytoplasm // inferred from direct assay --- 575.606018066406 360.369964599609 388.379486083984 665.630493164063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL144W /GEN=KES1 /DB_XREF=GI:6325113 /SEG=NC_001148:+280479,280925 /DEF=Hypothetical ORF /NOTE=Ypl144wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006065 // YPL144W SGDID:S0006065, Chr XVI from 280479-280925, Uncharacterized ORF // sgd // 11 // --- /// YPL144W // cdna:known chromosome:SGD1:XVI:280479:280925:1 gene:YPL144W // ensembl // 11 // --- --- No cerevisiae_gene 1.87153951725259 -1.59726413022777 -1.2343806957259 -1.48207111521316 1.15639946816413 Max fold change below threshold 4 1.87153951725259 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771700_at YNR047W.S1 Putative protein kinase that, when overexpressed, interferes with pheromone-induced growth arrest; localizes to the cytoplasm; potential Cdc28p substrate 1.87096991328044 2124.416015625 1333.47393798828 --- 19236 // response to pheromone // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4672 // protein kinase activity // inferred from sequence similarity 1215.05053710938 1975.50903320313 2273.32299804688 1451.89733886719 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR047W /GEN=PET494 /DB_XREF=GI:6324375 /SEG=NC_001146:+708522,711203 /DEF=Putative protein kinase that, when overexpressed, interferes with pheromone-induced growth arrest; localizes to the cytoplasm; potential Cdc28p substrate /NOTE=Ynr047wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 9020587]; go_process: response to pheromone [goid GO:0019236] [evidence IMP] [pmid 11337509] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 5.0E-65 /// hanks // 1.8.7 // AGC group; AGC VIII Flowering plant PVPK1 homologs; PsPK5 // 7.0E-95 --- --- S0005330 // YNR047W SGDID:S0005330, Chr XIV from 708523-711204, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020074 // cdna:Genscan chromosome:SGD1:XIV:708523:711204:1 // ensembl // 11 // --- /// GENEFINDER00000020586 // cdna:GeneFinder chromosome:SGD1:XIV:708523:711204:1 // ensembl // 11 // --- /// YNR047W // cdna:known chromosome:SGD1:XIV:708523:711204:1 gene:YNR047W // ensembl // 11 // --- --- No cerevisiae_gene 1.02499102343311 1.62586573386725 1.41693174413439 1.87096991328044 1.19492753142703 Max fold change below threshold 4 1.87096991328044 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776781_at YDR016C.S1 Essential protein, component of the DASH complex, involved in spindle integrity and kinetochore function; interacts with Duo1p and Dam1p; localizes to intranuclear spindles and kinetochore 1.87076052186652 128.823650360107 263.09806060791 DAD1 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from physical interaction /// 31110 // regulation of microtubule polymerization or depolymerization // inferred from physical interaction /// 31110 // regulation of microtubule polymerization or depolymerization // inferred from direct assay 778 // condensed nuclear chromosome kinetochore // inferred from physical interaction /// 5819 // spindle // inferred from physical interaction /// 42729 // DASH complex // inferred from direct assay /// 42729 // DASH complex // inferred from physical interaction 5200 // structural constituent of cytoskeleton // inferred from physical interaction 236.733688354492 126.544090270996 131.103210449219 289.462432861328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR016C /GEN=DAD1 /DB_XREF=GI:6320219 /SEG=NC_001136:-478470,478754 /DEF=Essential protein, component of the DASH complex, involved in spindle integrity and kinetochore function; interacts with Duo1p and Dam1p; localizes to intranuclear spindles and kintechore /NOTE=Dad1p; go_component: DASH complex [goid GO:0042729] [evidence IDA,IPI] [pmid 11782438]; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IPI] [pmid 11756468]; go_component: spindle [goid GO:0005819] [evidence IPI] [pmid 11756468]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 11756468]; go_process: mitotic spindle assembly (sensu Fungi) [goid GO:0030472] [evidence IPI] [pmid 11756468] --- --- --- --- --- --- S0002423 // DAD1 SGDID:S0002423, Chr IV from 478754-478470, reverse complement, Verified ORF // sgd // 11 // --- /// YDR016C // cdna:known chromosome:SGD1:IV:478470:478754:-1 gene:YDR016C // ensembl // 11 // --- --- No cerevisiae_gene -1.55181093698816 -1.87076052186652 1.3123016744444 -1.80570473860507 1.22273443578456 Max fold change below threshold 4 1.87076052186652 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775460_at SPAC2F7.10.S1 --- 1.8703453822792 --- --- --- --- 11.0529766082764 7.43975830078125 11.8125514984131 10.8061027526855 0.303710997104645 0.432372987270355 0.303710997104645 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F7.10 /DEF=palmitoyltransferase activity (predicted) --- --- --- --- --- --- SPAC2F7.10 // |||palmitoyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.8703453822792 -1.4856633994569 1.1338328953365 1.06872129717238 -1.0228457808741 Max fold change below threshold 4 1.8703453822792 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776293_at SPCC4G3.08.S1 --- 1.87001981630676 --- --- --- --- 5.25779581069946 6.6535120010376 2.81162571907043 4.15249109268188 0.398925989866257 0.466064006090164 0.601073980331421 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4G3.08 /GEN=psk1 /DEF=serinethreonine protein kinase --- --- --- --- --- --- SPCC4G3.08 // |psk1||serine/threonine protein kinase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.15707306747617 1.2654565221985 -1.00199018655648 -1.87001981630676 -1.26617870895991 Max fold change below threshold 4 1.87001981630676 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779751_s_at YBR219C.S1 Hypothetical protein /// Hypothetical protein 1.8697413324348 342.248245239258 459.385848999023 --- --- --- --- 409.646331787109 319.842681884766 364.65380859375 509.125366210938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR219C /GEN=PYC2 /DB_XREF=GI:6319696 /SEG=NC_001134:-662456,663260 /DEF=Hypothetical ORF /NOTE=Ybr219cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000423 // span:10-29,65-84,99-118 // numtm:3 /// S0000424 // span:21-43,53-75,95-117,137-159,171-193,213-235,331-350,385-407,420-442,523-542 // numtm:10 S0000423 // YBR219C SGDID:S0000423, Chr II from 663298-662998,662576-662494, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0000424 // YBR220C SGDID:S0000424, Chr II from 664672-662990, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021315 // cdna:Genscan chromosome:SGD1:II:662990:664672:-1 // ensembl // 11 // --- /// YBR219C // cdna:known chromosome:SGD1:II:662494:663298:-1 gene:YBR219C // ensembl // 11 // --- /// YBR220C // cdna:known chromosome:SGD1:II:662990:664672:-1 gene:YBR220C // ensembl // 11 // --- --- No cerevisiae_gene 1.05792342578284 -1.28077444002517 1.8697413324348 -1.12338421300704 1.24284126746563 Max fold change below threshold 4 1.8697413324348 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779656_at YCR028C.S1 Plasma membrane H+-pantothenate symporter; confers sensitivity to the antifungal agent fenpropimorph 1.86960208218207 533.432388305664 499.868347167969 FEN2 6897 // endocytosis // inferred from mutant phenotype /// 15887 // pantothenate transport // inferred from genetic interaction /// 15887 // pantothenate transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from genetic interaction /// 5886 // plasma membrane // inferred from sequence similarity 15233 // pantothenate transporter activity // inferred from genetic interaction /// 15233 // pantothenate transporter activity // inferred from mutant phenotype 448.536926269531 401.888946533203 664.975830078125 551.199768066406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR028C /GEN=FEN2 /DB_XREF=GI:6319876 /SEG=NC_001135:-170881,172419 /DEF=Plasma membrane H+-pantothenate symporter; confers sensitivity to the antifungal agent fenpropimorph /NOTE=Fen2p; go_component: plasma membrane [goid GO:0005886] [evidence IGI,ISS] [pmid 10373490]; go_function: pantothenate transporter activity [goid GO:0015233] [evidence IGI,IMP] [pmid 10373490]; go_process: pantothenate transport [goid GO:0015887] [evidence IGI,IMP] [pmid 10373490] --- --- --- --- --- S0000623 // span:28-50,74-96,103-125,129-151,163-185,200-222,277-299,314-333,340-358,368-390,402-421,436-455 // numtm:12 S0000623 // FEN2 SGDID:S0000623, Chr III from 172419-170881, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023303 // cdna:GeneFinder chromosome:SGD1:III:170881:172155:-1 // ensembl // 11 // --- /// YCR028C // cdna:known chromosome:SGD1:III:170881:172419:-1 gene:YCR028C // ensembl // 11 // --- GENSCAN00000022479 // ensembl // 3 // Cross Hyb Matching Probes No cerevisiae_gene 1.86960208218207 -1.11607181570612 1.71693993696139 1.48254422575352 1.22888381264552 Max fold change below threshold 4 1.86960208218207 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770927_at YJL030W.S1 Component of the spindle-assembly checkpoint complex, which delays the onset of anaphase in cells with defects in mitotic spindle assembly; forms a complex with Mad1p 1.86887381352836 222.88005065918 397.373718261719 MAD2 7094 // mitotic spindle checkpoint // inferred from mutant phenotype /// 7094 // mitotic spindle checkpoint // inferred from genetic interaction 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 5643 // nuclear pore // inferred from direct assay --- 367.956604003906 196.886810302734 248.873291015625 426.790832519531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL030W /GEN=MAD2 /DB_XREF=GI:6322430 /SEG=NC_001142:+387573,388163 /DEF=spindle checkpoint complex subunit /NOTE=Mad2p; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IDA] [pmid 12473689]; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 12473689]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitotic spindle checkpoint [goid GO:0007094] [evidence IGI,IMP] [pmid 10704439] --- --- --- --- --- --- S0003567 // MAD2 SGDID:S0003567, Chr X from 387573-388163, Verified ORF // sgd // 11 // --- /// YJL030W // cdna:known chromosome:SGD1:X:387573:388163:1 gene:YJL030W // ensembl // 11 // --- --- No cerevisiae_gene -1.49780051114676 -1.86887381352836 1.27256481230057 -1.47848972664891 1.159894476347 Max fold change below threshold 4 1.86887381352836 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769927_at YBR258C.S1 Subunit of the COMPASS (Set1C) complex, which methylates Rad6p ubiquitinated histone H3 on lysine 4 and is required in transcriptional silencing near telomeres 1.86866479234091 39.4417152404785 59.1387882232666 SHG1 16571 // histone methylation // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 48188 // COMPASS complex // inferred from physical interaction 42800 // histone lysine N-methyltransferase activity (H3-K4 specific) // inferred from direct assay 56.5076789855957 41.6294631958008 37.2539672851563 61.7698974609375 0.00122069998178631 0.000732421991415322 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR258C /GEN=SHG1 /DB_XREF=GI:6319735 /SEG=NC_001134:-729691,730119 /DEF=Subunit of the COMPASS complex, which methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres /NOTE=Shg1p; go_component: COMPASS complex [goid GO:0048188] [evidence IPI] [pmid 11805083]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: histone lysine N-methyltransferase activity (H3-K4 specific) [goid GO:0042800] [evidence IDA] [pmid 11742990]; go_process: histone methylation [goid GO:0016571] [evidence IDA] [pmid 11742990] --- --- --- --- --- --- S0000462 // SHG1 SGDID:S0000462, Chr II from 730157-729729, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021346 // cdna:Genscan chromosome:SGD1:II:729729:730157:-1 // ensembl // 11 // --- /// GENEFINDER00000022180 // cdna:GeneFinder chromosome:SGD1:II:729729:730157:-1 // ensembl // 11 // --- /// YBR258C // cdna:known chromosome:SGD1:II:729729:730157:-1 gene:YBR258C // ensembl // 11 // --- --- No cerevisiae_gene 1.86866479234091 -1.35739629213609 -1.14143627038506 -1.51682312257012 1.09312395359015 Max fold change below threshold 4 1.86866479234091 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773203_at YOR278W.S1 Uroporphyrinogen III synthase, catalyzes the conversion of hydroxymethylbilane to uroporphyrinogen III, the fourth step in the heme biosynthetic pathway 1.86824023512802 733.94580078125 488.57080078125 HEM4 6783 // heme biosynthesis // inferred from mutant phenotype --- 4852 // uroporphyrinogen-III synthase activity // inferred from mutant phenotype /// 4852 // uroporphyrinogen-III synthase activity // inferred from sequence similarity 441.99658203125 710.712768554688 757.178833007813 535.14501953125 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR278W /GEN=HEM4 /DB_XREF=GI:6324852 /SEG=NC_001147:+842814,843641 /DEF=Uroporphyrinogen III synthase, catalyzes the conversion of hydroxymethylbilane to uroporphyrinogen III, the fourth step in the heme biosynthetic pathway /NOTE=Hem4p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: uroporphyrinogen-III synthase activity [goid GO:0004852] [evidence IMP,ISS] [pmid 7597845]; go_process: heme biosynthesis [goid GO:0006783] [evidence IMP] [pmid 323256] --- --- --- --- --- --- S0005804 // HEM4 SGDID:S0005804, Chr XV from 842814-843641, Verified ORF // sgd // 11 // --- /// GENSCAN00000017717 // cdna:Genscan chromosome:SGD1:XV:842814:843641:1 // ensembl // 11 // --- /// GENEFINDER00000022566 // cdna:GeneFinder chromosome:SGD1:XV:842814:843641:1 // ensembl // 11 // --- /// YOR278W // cdna:known chromosome:SGD1:XV:842814:843641:1 gene:YOR278W // ensembl // 11 // --- --- No cerevisiae_gene 1.35205267512806 1.60795987445993 1.86824023512802 1.71308753006212 1.21074470094752 Max fold change below threshold 4 1.86824023512802 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771719_at YMR180C.S1 RNA 5'-triphosphatase, localizes to both the nucleus and cytoplasm 1.86796599265005 931.248992919922 523.731689453125 CTL1 6396 // RNA processing // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4651 // polynucleotide 5'-phosphatase activity // inferred from direct assay 506.503845214844 916.366027832031 946.131958007813 540.959533691406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR180C /GEN=CTL1 /DB_XREF=GI:6323834 /SEG=NC_001145:-622250,623212 /DEF=RNA 5'-triphosphatase, localizes to both the nucleus and cytoplasm /NOTE=Ctl1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10219091]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10219091]; go_function: polynucleotide 5'-phosphatase activity [goid GO:0004651] [evidence IDA] [pmid 10219091]; go_process: RNA processing [goid GO:0006396] [evidence ISS] [pmid 10219091] --- --- --- --- --- --- S0004792 // CTL1 SGDID:S0004792, Chr XIII from 623212-622250, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018865 // cdna:Genscan chromosome:SGD1:XIII:622250:623212:-1 // ensembl // 11 // --- /// YMR180C // cdna:known chromosome:SGD1:XIII:622250:623212:-1 gene:YMR180C // ensembl // 11 // --- --- No cerevisiae_gene 1.81595865017047 1.80919856085858 -1.85479195510803 1.86796599265005 1.06802650918069 Max fold change below threshold 4 1.86796599265005 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771088_at YJR099W.S1 Ubiquitin C-terminal hydrolase that cleaves ubiquitin-protein fusions to generate monomeric ubiquitin; hydrolyzes the peptide bond at the C-terminus of ubiquitin; also the major processing enzyme for the ubiquitin-like protein Rub1p 1.86788546816885 485.992721557617 829.650665283203 YUH1 16579 // protein deubiquitination // traceable author statement 5737 // cytoplasm // inferred from curator 4843 // ubiquitin-specific protease activity // traceable author statement 785.941711425781 420.765472412109 551.219970703125 873.359619140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR099W /GEN=YUH1 /DB_XREF=GI:6322559 /SEG=NC_001142:+615490,616200 /DEF=ubiquitin hydrolase /NOTE=Yuh1p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 1429680]; go_function: ubiquitin-specific protease activity [goid GO:0004843] [evidence TAS] [pmid 1429680]; go_process: protein deubiquitination [goid GO:0016579] [evidence TAS] [pmid 8982460] --- --- --- --- --- --- S0003860 // YUH1 SGDID:S0003860, Chr X from 615490-616200, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024511 // cdna:GeneFinder chromosome:SGD1:X:615490:616200:1 // ensembl // 11 // --- /// YJR099W // cdna:known chromosome:SGD1:X:615490:616200:1 gene:YJR099W // ensembl // 11 // --- --- No cerevisiae_gene -1.37921904796179 -1.86788546816885 1.36637066044549 -1.42582227277297 1.11122696052899 Max fold change below threshold 4 1.86788546816885 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769313_at YGL059W.S1 Hypothetical protein 1.8671946612379 687.598785400391 1039.59976196289 --- --- 5739 // mitochondrion // inferred from direct assay 4672 // protein kinase activity // inferred from sequence similarity 1066.98937988281 803.757751464844 571.439819335938 1012.21014404297 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL059W /GEN=YBP2 /DB_XREF=GI:27808706 /SEG=NC_001139:+392226,393701 /DEF=Hypothetical ORF /NOTE=Ygl059wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 10592175]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003027 // YGL059W SGDID:S0003027, Chr VII from 392228-393703, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019301 // cdna:Genscan chromosome:SGD1:VII:392228:393703:1 // ensembl // 11 // --- /// YGL059W // cdna:known chromosome:SGD1:VII:392228:393703:1 gene:YGL059W // ensembl // 11 // --- --- No cerevisiae_gene -1.79385713957349 -1.32750120037814 1.17519300629681 -1.8671946612379 -1.05411844186924 Max fold change below threshold 4 1.8671946612379 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771473_at YOR238W.S1 Hypothetical protein 1.86714381361276 868.371276855469 1679.73559570313 --- --- 5737 // cytoplasm // inferred from direct assay --- 1611.05029296875 862.842102050781 873.900451660156 1748.4208984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR238W /GEN=HES1 /DB_XREF=GI:37362697 /SEG=NC_001147:+783677,784588 /DEF=Hypothetical ORF /NOTE=Yor238wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005764 // YOR238W SGDID:S0005764, Chr XV from 783677-784588, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017661 // cdna:Genscan chromosome:SGD1:XV:783677:784588:1 // ensembl // 11 // --- /// YOR238W // cdna:known chromosome:SGD1:XV:783677:784588:1 gene:YOR238W // ensembl // 11 // --- GENEFINDER00000022539 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.32788912225981 -1.86714381361276 -1.11798229708574 -1.84351694739169 1.08526773252721 Max fold change below threshold 4 1.86714381361276 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770968_at YLR038C.S1 Subunit VIb of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; required for assembly of fully active cytochrome c oxidase but not required for activity after assembly 1.86710584762805 6460.0654296875 4040.00927734375 COX12 8535 // cytochrome c oxidase complex assembly // inferred from mutant phenotype 5751 // respiratory chain complex IV (sensu Eukaryota) // inferred from physical interaction 4129 // cytochrome-c oxidase activity // inferred from direct assay 4497.00732421875 8396.388671875 4523.7421875 3583.01123046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR038C /GEN=COX12 /DB_XREF=GI:6323067 /SEG=NC_001144:-224922,225173 /DEF=Subunit VIb of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; required for assembly of fully active cytochrome c oxidase but not required for activity after assembly /NOTE=Cox12p; go_component: respiratory chain complex IV (sensu Eukarya) [goid GO:0005751] [evidence IPI] [pmid 1331058]; go_function: cytochrome-c oxidase activity [goid GO:0004129] [evidence IDA] [pmid 1331058]; go_process: cytochrome c oxidase biogenesis [goid GO:0008535] [evidence IMP] [pmid 1331058] --- --- --- --- --- --- S0004028 // COX12 SGDID:S0004028, Chr XII from 225173-224922, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024674 // cdna:GeneFinder chromosome:SGD1:XII:224922:225173:-1 // ensembl // 11 // --- /// YLR038C // cdna:known chromosome:SGD1:XII:224922:225173:-1 gene:YLR038C // ensembl // 11 // --- --- No cerevisiae_gene -1.39408495545564 1.86710584762805 1.01998790211068 1.00594503440928 -1.25509160729882 Max fold change below threshold 4 1.86710584762805 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770867_at YDL237W.S1 Hypothetical protein 1.86710541174508 1419.97760009766 895.971130371094 --- --- --- --- 923.691955566406 1115.32495117188 1724.63024902344 868.250305175781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL237W /GEN=ADY3 /DB_XREF=GI:6319964 /SEG=NC_001136:+30657,31829 /DEF=Hypothetical ORF /NOTE=Ydl237wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002396 // span:2-24 // numtm:1 S0002396 // YDL237W SGDID:S0002396, Chr IV from 30657-31829, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024925 // cdna:Genscan chromosome:SGD1:IV:30657:31829:1 // ensembl // 11 // --- /// YDL237W // cdna:known chromosome:SGD1:IV:30657:31829:1 gene:YDL237W // ensembl // 11 // --- --- No cerevisiae_gene -1.03415624061043 1.20746418159283 1.2723434591872 1.86710541174508 -1.06385445540316 Max fold change below threshold 4 1.86710541174508 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780005_at YDR075W.S1 Catalytic subunit of protein phosphatase; involved in activation of Gln3p, which is a transcription factor with a role in nitrogen utilization 1.86670991725697 124.226516723633 235.22917175293 PPH3 6470 // protein amino acid dephosphorylation // inferred from direct assay /// 6807 // nitrogen compound metabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 158 // protein phosphatase type 2A activity // inferred from direct assay 222.246917724609 119.058090209961 129.394943237305 248.21142578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR075W /GEN=PPH3 /DB_XREF=GI:6320280 /SEG=NC_001136:+597151,598077 /DEF=Catalytic subunit of protein phosphatase; involved in activation of Gln3p, which is a transcription factor with a role in nitrogen utilization /NOTE=Pph3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: protein phosphatase type 2A activity [goid GO:0000158] [evidence IDA] [pmid 7941742]; go_process: nitrogen metabolism [goid GO:0006807] [evidence IMP] [pmid 10940301]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence IDA] [pmid 7941742] --- --- --- --- --- --- S0002482 // PPH3 SGDID:S0002482, Chr IV from 597152-598078, Verified ORF // sgd // 11 // --- /// YDR075W // cdna:known chromosome:SGD1:IV:597152:598078:1 gene:YDR075W // ensembl // 11 // --- GENEFINDER00000023493 // ensembl // 8 // Cross Hyb Matching Probes /// GENSCAN00000025152 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.11252508784757 -1.86670991725697 1.22289565507422 -1.71758580485652 1.11682730326462 Max fold change below threshold 4 1.86670991725697 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777097_at YJR109C.S1 Large subunit of carbamoyl phosphate synthetase, which catalyzes a step in the synthesis of citrulline, an arginine precursor 1.86670857376719 1540.31896972656 1610.93823242188 CPA2 6526 // arginine biosynthesis // traceable author statement 5951 // carbamoyl-phosphate synthase complex // inferred from sequence similarity 4088 // carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity // inferred from sequence similarity /// 4088 // carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity // inferred from mutant phenotype 1600.52990722656 1657.07800292969 1423.55993652344 1621.34655761719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR109C /GEN=CPA2 /DB_XREF=GI:6322569 /SEG=NC_001142:-629500,632856 /DEF=Large subunit of carbamoyl phosphate synthetase, which catalyzes a step in the synthesis of citrulline, an arginine precursor /NOTE=Cpa2p; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 205532]; go_function: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [goid GO:0004088] [evidence IMP,ISS] [pmid 6358221]; go_process: arginine biosynthesis [goid GO:0006526] [evidence TAS] [pmid 205532] --- --- --- --- --- --- S0003870 // CPA2 SGDID:S0003870, Chr X from 632856-629500, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024218 // cdna:Genscan chromosome:SGD1:X:629500:632856:-1 // ensembl // 11 // --- /// GENEFINDER00000024397 // cdna:GeneFinder chromosome:SGD1:X:629500:632856:-1 // ensembl // 11 // --- /// YJR109C // cdna:known chromosome:SGD1:X:629500:632856:-1 gene:YJR109C // ensembl // 11 // --- --- No cerevisiae_gene 1.86670857376719 1.03533085851617 -1.20879948696134 -1.12431508232475 1.01300609897799 Max fold change below threshold 4 1.86670857376719 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770132_at YJR100C.S1 Hypothetical protein 1.86648594195059 544.1630859375 940.099304199219 --- --- --- --- 891.452209472656 477.609924316406 610.716247558594 988.746398925781 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR100C /GEN=YUH1 /DB_XREF=GI:6322560 /SEG=NC_001142:-616265,617248 /DEF=Hypothetical ORF /NOTE=Yjr100cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003861 // YJR100C SGDID:S0003861, Chr X from 617248-616265, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024211 // cdna:Genscan chromosome:SGD1:X:616265:617248:-1 // ensembl // 11 // --- /// YJR100C // cdna:known chromosome:SGD1:X:616265:617248:-1 gene:YJR100C // ensembl // 11 // --- --- No cerevisiae_gene -1.21560555380451 -1.86648594195059 1.41331820849235 -1.45968313932425 1.109141228682 Max fold change below threshold 4 1.86648594195059 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770220_at SPAC3A12.08.S1 --- 1.86628316264968 --- --- --- --- 4.8934268951416 2.62201738357544 3.16618990898132 5.47888660430908 0.432372987270355 0.432372987270355 0.303710997104645 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A12.08 /DEF=conserved fungal protein --- --- --- --- --- --- SPAC3A12.08 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.41273666814133 -1.86628316264968 1.46823409268524 -1.54552539039454 1.119642067147 Max fold change below threshold 4 1.86628316264968 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779889_s_at YAR075W.S1 Inosine monophosphate dehydrogenase, catalyzes the first step of GMP biosynthesis, member of a four-gene family in S. cerevisiae, constitutively expressed /// Inosine monophosphate dehydrogenase, catalyzes the first step of GMP biosynthesis, expression is induced by mycophenolic acid resulting in resistance to the drug, expression is repressed by nutrient limitation /// Nonfunctional protein with homology to IMP dehydrogenase; IMD1 is a probable pseudogene that is located close to the telomere and is not expressed at detectable levels /// Hypothetical protein 1.86625948596465 2502.99890136719 2241.54260253906 IMD3 /// IMD2 /// IMD1 6183 // GTP biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 3938 // IMP dehydrogenase activity // traceable author statement /// 3938 // IMP dehydrogenase activity // inferred from mutant phenotype 2270.19970703125 2316.90405273438 2689.09375 2212.88549804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR075W /GEN=IMD1 /DB_XREF=GI:6319353 /SEG=NC_001133:+228837,229310 /DEF=Hypothetical ORF /NOTE=Yar075wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002145 // YAR075W SGDID:S0002145, Chr I from 228835-229308, Uncharacterized ORF // sgd // 11 // --- /// S0001259 // IMD2 SGDID:S0001259, Chr VIII from 554395-555966, Verified ORF // sgd // 11 // --- /// S0004424 // IMD3 SGDID:S0004424, Chr XII from 1002553-1004124, Verified ORF // sgd // 11 // --- /// GENSCAN00000016740 // cdna:Genscan chromosome:SGD1:VIII:554395:555966:1 // ensembl // 11 // --- /// GENEFINDER00000020317 // cdna:GeneFinder chromosome:SGD1:VIII:554395:555966:1 // ensembl // 11 // --- /// GENSCAN00000018148 // cdna:Genscan chromosome:SGD1:XII:1002553:1004124:1 // ensembl // 11 // --- /// GENEFINDER00000024752 // cdna:GeneFinder chromosome:SGD1:XII:1002553:1004124:1 // ensembl // 11 // --- /// YAR075W // cdna:known chromosome:SGD1:I:228835:229308:1 gene:YAR075W // ensembl // 11 // --- /// YHR216W // cdna:known chromosome:SGD1:VIII:554395:555966:1 gene:YHR216W // ensembl // 11 // --- /// YLR432W // cdna:known chromosome:SGD1:XII:1002553:1004124:1 gene:YLR432W // ensembl // 11 // --- --- No cerevisiae_gene 1.86625948596465 1.02057279170571 -1.42013609346497 1.18451858736099 -1.02590021446431 Max fold change below threshold 4 1.86625948596465 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778156_at YNL220W.S1 Adenylosuccinate synthase, catalyzes the first committed step in the 'de novo' biosynthesis of adenosine 1.8661347092544 2631.95324707031 1926.55126953125 ADE12 6164 // purine nucleotide biosynthesis // traceable author statement /// 46086 // adenosine biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 4019 // adenylosuccinate synthase activity // inferred from direct assay 1944.53076171875 2431.04125976563 2832.865234375 1908.57177734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL220W /GEN=ADE12 /DB_XREF=GI:6324109 /SEG=NC_001146:+234412,235713 /DEF=Adenylosuccinate synthase, catalyzes the first committed step in the 'de novo' biosynthesis of adenosine /NOTE=Ade12p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: adenylosuccinate synthase activity [goid GO:0004019] [evidence IDA] [pmid 10417315]; go_process: adenosine biosynthesis [goid GO:0046086] [evidence TAS] [pmid 10417315]; go_process: purine nucleotide biosynthesis [goid GO:0006164] [evidence TAS] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.29999995231628 --- S0005164 // ADE12 SGDID:S0005164, Chr XIV from 234412-235713, Verified ORF // sgd // 11 // --- /// GENSCAN00000019864 // cdna:Genscan chromosome:SGD1:XIV:234412:235713:1 // ensembl // 11 // --- /// GENEFINDER00000020696 // cdna:GeneFinder chromosome:SGD1:XIV:234412:235713:1 // ensembl // 11 // --- /// YNL220W // cdna:known chromosome:SGD1:XIV:234412:235713:1 gene:YNL220W // ensembl // 11 // --- --- No cerevisiae_gene 1.8661347092544 1.25019429243529 1.10093036885556 1.4568374489849 -1.01884078178346 Max fold change below threshold 4 1.8661347092544 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776621_at YKL144C.S1 RNA polymerase III subunit C25 1.86592125597494 195.866149902344 407.036697387695 RPC25 6383 // transcription from RNA polymerase III promoter // traceable author statement 5666 // DNA-directed RNA polymerase III complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 357.764007568359 199.996444702148 191.735855102539 456.309387207031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL144C /GEN=RPC25 /DB_XREF=GI:6322705 /SEG=NC_001143:-175848,176486 /DEF=RNA polymerase III subunit C25 /NOTE=Rpc25p; go_component: DNA-directed RNA polymerase III complex [goid GO:0005666] [evidence TAS] [pmid 8246845]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 8246845]; go_process: transcription from Pol III promoter [goid GO:0006383] [evidence TAS] --- --- --- --- --- --- S0001627 // RPC25 SGDID:S0001627, Chr XI from 176486-175848, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018311 // cdna:Genscan chromosome:SGD1:XI:175848:176486:-1 // ensembl // 11 // --- /// YKL144C // cdna:known chromosome:SGD1:XI:175848:176486:-1 gene:YKL144C // ensembl // 11 // --- GENEFINDER00000023010 // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene 1.57377923164566 -1.78885183734727 1.02672825730084 -1.86592125597494 1.27544799799304 Max fold change below threshold 4 1.86592125597494 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779552_at YOR251C.S1 catalyzes transfer of the sulfane atom of thiosulfate to cyanide to form sulfite and thiocyanate 1.86591491173943 636.546966552734 451.920501708984 --- --- 5737 // cytoplasm // inferred from direct assay 4792 // thiosulfate sulfurtransferase activity // inferred from sequence similarity 444.424499511719 443.835632324219 829.25830078125 459.41650390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR251C /GEN=CLP1 /DB_XREF=GI:6324825 /SEG=NC_001147:-802550,803464 /DEF=catalyzes transfer of the sulfane atom of thiosulfate to cyanide to form sulfite and thiocyanate /NOTE=Yor251cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: thiosulfate sulfurtransferase activity [goid GO:0004792] [evidence ISS] [pmid 9153759]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005777 // YOR251C SGDID:S0005777, Chr XV from 803464-802550, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017677 // cdna:Genscan chromosome:SGD1:XV:802550:803464:-1 // ensembl // 11 // --- /// GENEFINDER00000022769 // cdna:GeneFinder chromosome:SGD1:XV:802550:803464:-1 // ensembl // 11 // --- /// YOR251C // cdna:known chromosome:SGD1:XV:802550:803464:-1 gene:YOR251C // ensembl // 11 // --- --- No cerevisiae_gene 1.07112016547251 -1.00132676861571 1.07111501540009 1.86591491173943 1.03373352371663 Max fold change below threshold 4 1.86591491173943 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776225_at YHR162W.S1 Hypothetical protein 1.8659016803692 5611.96752929688 3441.23278808594 --- --- 5739 // mitochondrion // inferred from direct assay --- 3648.66455078125 6808.04931640625 4415.8857421875 3233.80102539063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR162W /GEN=YAP1801 /DB_XREF=GI:6321956 /SEG=NC_001140:+423073,423462 /DEF=Hypothetical ORF /NOTE=Yhr162wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001205 // YHR162W SGDID:S0001205, Chr VIII from 423074-423463, Uncharacterized ORF // sgd // 11 // --- /// YHR162W // cdna:known chromosome:SGD1:VIII:423074:423463:1 gene:YHR162W // ensembl // 11 // --- --- No cerevisiae_gene 1.21168918154853 1.8659016803692 1.16151377089086 1.21027452119214 -1.12828975009077 Max fold change below threshold 4 1.8659016803692 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772177_at SPBC1861.03.S1 --- 1.865685515435 --- --- --- --- 4.47117805480957 8.34181213378906 8.25789451599121 4.41068649291992 0.219482004642487 0.24609400331974 0.129638999700546 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1861.03 /DEF=N-acetyltransferase complex (predicted) --- --- --- --- --- --- SPBC1861.03 // |mak10||NatC N-acetyltransferase complex Mak10 subunit |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.59768640273699 1.865685515435 1.74334800794306 1.84691694554824 -1.01371477251597 Max fold change below threshold 4 1.865685515435 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776033_at YHR100C.S1 Hypothetical protein 1.86567673027417 268.143295288086 371.509948730469 --- --- --- --- 385.943084716797 227.878295898438 308.408294677734 357.076812744141 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR100C /GEN=TRA1 /DB_XREF=GI:6321892 /SEG=NC_001140:-314118,314675 /DEF=Hypothetical ORF /NOTE=Yhr100cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001142 // YHR100C SGDID:S0001142, Chr VIII from 314675-314118, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// YHR100C // cdna:known chromosome:SGD1:VIII:314118:314675:-1 gene:YHR100C // ensembl // 10 // --- --- No cerevisiae_gene -1.86567673027417 -1.69363687399526 -1.08189238088076 -1.25140306333227 -1.08084051089965 Max fold change below threshold 4 1.86567673027417 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770038_at SPAC11D3.02c.S1 --- 1.86452616598079 --- --- --- --- 4.78933382034302 5.09509944915771 6.79844570159912 3.05182003974915 0.0771484375 0.266845703125 0.171387001872063 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11D3.02c /DEF=ELLA family protein --- --- --- --- --- --- SPAC11D3.02c // |||ELLA family protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.58580428093033 1.06384303961355 -1.86452616598079 1.41949714858511 -1.56933690648964 Max fold change below threshold 4 1.86452616598079 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773924_at YJR021C.S1 Protein involved in early stages of meiotic recombination; involved in altering chromatin structure at DNA double-stranded break sites and in coordination between the initiation of recombination and the first division of meiosis 1.86359965768693 372.740509033203 595.168182373047 REC107 7131 // meiotic recombination // inferred from mutant phenotype --- --- 579.901733398438 311.172912597656 434.30810546875 610.434631347656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR021C /GEN=REC107 /DB_XREF=GI:6322481 /SEG=NC_001142:-468469,469493 /DEF=meiotic recombination protein /NOTE=Rec107p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiotic recombination [goid GO:0007131] [evidence IMP] [pmid 8536989] --- --- --- --- --- --- S0003782 // REC107 SGDID:S0003782, Chr X from 469493-469178,469097-468469, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000024150 // cdna:Genscan chromosome:SGD1:X:468469:469026:-1 // ensembl // 11 // --- /// GENEFINDER00000024355 // cdna:GeneFinder chromosome:SGD1:X:468469:469026:-1 // ensembl // 11 // --- /// YJR021C // cdna:known chromosome:SGD1:X:468469:469493:-1 gene:YJR021C // ensembl // 11 // --- M60755 // gb // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.6411999466586 -1.86359965768693 1.49758891329539 -1.33523120129786 1.05265184804723 Max fold change below threshold 4 1.86359965768693 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776122_at YML126C.S1 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) synthase, catalyzes the formation of HMG-CoA from acetyl-CoA and acetoacetyl-CoA; involved in the second step in mevalonate biosynthesis 1.86358898020975 3562.01538085938 5682.82373046875 ERG13 6696 // ergosterol biosynthesis // traceable author statement 5739 // mitochondrion // traceable author statement /// 5783 // endoplasmic reticulum // traceable author statement 4421 // hydroxymethylglutaryl-CoA synthase activity // traceable author statement 6473.52392578125 3650.34423828125 3473.6865234375 4892.12353515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML126C /GEN=ERG13 /DB_XREF=GI:6323509 /SEG=NC_001145:-19061,20536 /DEF=3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) synthase, catalyzes the formation of HMG-CoA from acetyl-CoA and acetoacetyl-CoA; involved in the second step in mevalonate biosynthesis /NOTE=Erg13p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS]; go_component: mitochondrion [goid GO:0005739] [evidence TAS]; go_function: hydroxymethylglutaryl-CoA synthase activity [goid GO:0004421] [evidence TAS]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence TAS] --- --- --- --- --- --- S0004595 // ERG13 SGDID:S0004595, Chr XIII from 20536-19061, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018610 // cdna:Genscan chromosome:SGD1:XIII:19061:20275:-1 // ensembl // 11 // --- /// GENEFINDER00000021982 // cdna:GeneFinder chromosome:SGD1:XIII:19061:20446:-1 // ensembl // 11 // --- /// YML126C // cdna:known chromosome:SGD1:XIII:19061:20536:-1 gene:YML126C // ensembl // 11 // --- --- No cerevisiae_gene -1.79068440804006 -1.77340094610619 -1.33321839184489 -1.86358898020975 -1.32325438621093 Max fold change below threshold 4 1.86358898020975 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775687_at SPBC32H8.07.S1 --- 1.86311160635031 --- --- --- --- 12.2653713226318 18.0554962158203 10.8148212432861 6.5832724571228 0.0239257998764515 0.0461426004767418 0.0561522990465164 0.129638999700546 P P M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC32H8.07 /GEN=git5 /DEF=heterotrimeric G protein (beta subunit) (PMID 11238401) --- --- --- --- --- --- SPBC32H8.07 // |git5|gpb1|heterotrimeric G protein beta subunit Git5|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.57954087239625 1.4720709011479 1.01327328282784 -1.13412612624052 -1.86311160635031 Max fold change below threshold 4 1.86311160635031 Max fold change below threshold PPPPMA No 4 0 PPMA 1 2 1 No No 1 < x = 2
1775919_at YJR125C.S1 Protein containing an N-terminal epsin-like domain involved in clathrin recruitment and traffic between the Golgi and endosomes; associates with the clathrin adaptor Gga2p 1.86258488677019 1304.45587158203 1338.19537353516 ENT3 147 // actin cortical patch assembly // inferred from sequence similarity /// 6605 // protein targeting // inferred from mutant phenotype /// 6895 // Golgi to endosome transport // inferred from mutant phenotype /// 6897 // endocytosis // inferred from sequence similarity /// 7015 // actin filament organization // inferred from sequence similarity 30125 // clathrin vesicle coat // inferred from direct assay /// 30479 // actin cortical patch // inferred from physical interaction 5515 // protein binding // inferred from physical interaction 1305.70190429688 1253.56640625 1355.34533691406 1370.68884277344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR125C /GEN=ENT3 /DB_XREF=GI:6322585 /SEG=NC_001142:-654652,655878 /DEF=Protein containing an N-terminal epsin-like domain involved in clathrin recruitment and traffic between the Golgi and endosomes; associates with the clathrin adaptor Gga2p /NOTE=Ent3p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IPI] [pmid 10652251]; go_component: clathrin vesicle coat [goid GO:0030125] [evidence IDA] [pmid 12483220]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12483220]; go_process: Golgi to endosome transport [goid GO:0006895] [evidence IMP] [pmid 12483220]; go_process: actin cortical patch assembly [goid GO:0000147] [evidence ISS] [pmid 10449404]; go_process: actin filament organization [goid GO:0007015] [evidence ISS] [pmid 10449404]; go_process: endocytosis [goid GO:0006897] [evidence ISS] [pmid 10449404] --- --- --- --- --- --- S0003886 // ENT3 SGDID:S0003886, Chr X from 655878-654652, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024231 // cdna:Genscan chromosome:SGD1:X:654652:655851:-1 // ensembl // 11 // --- /// GENEFINDER00000024374 // cdna:GeneFinder chromosome:SGD1:X:654652:655851:-1 // ensembl // 11 // --- /// YJR125C // cdna:known chromosome:SGD1:X:654652:655878:-1 gene:YJR125C // ensembl // 11 // --- --- No cerevisiae_gene -1.86258488677019 -1.04158973771708 1.00041584434258 1.03802049491834 1.0497716502233 Max fold change below threshold 4 1.86258488677019 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774673_at YHR012W.S1 Endosomal protein that is a subunit of the membrane-associated retromer complex essential for endosome-to-Golgi retrograde transport; forms a subcomplex with Vps35p and Vps26p that selects cargo proteins for endosome-to-Golgi retrieval 1.86228459908334 550.35009765625 701.581634521484 VPS29 42147 // retrograde transport, endosome to Golgi // inferred from physical interaction 5768 // endosome // inferred from physical interaction /// 30904 // retromer complex // traceable author statement --- 659.354797363281 354.056945800781 746.643249511719 743.808471679688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR012W /GEN=VPS29 /DB_XREF=GI:6321800 /SEG=NC_001140:+129474,130441 /DEF=vacuolar protein sorting /NOTE=Vps29p; go_component: endosome [goid GO:0005768] [evidence IPI] [pmid 9700157]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: retrograde transport, endosome to Golgi [goid GO:0042147] [evidence IPI] [pmid 9700157] --- --- --- --- --- --- S0001054 // VPS29 SGDID:S0001054, Chr VIII from 129474-129521,129641-130441, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000016564 // cdna:Genscan chromosome:SGD1:VIII:129845:130441:1 // ensembl // 11 // --- /// GENEFINDER00000020266 // cdna:GeneFinder chromosome:SGD1:VIII:129845:130441:1 // ensembl // 11 // --- /// YHR012W // cdna:known chromosome:SGD1:VIII:129474:130441:1 gene:YHR012W // ensembl // 11 // --- --- No cerevisiae_gene -1.0666092364563 -1.86228459908334 1.23096706995151 1.13238464707848 1.12808532622214 Max fold change below threshold 4 1.86228459908334 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777817_at YER074W.S1 Protein component of the small (40S) ribosomal subunit; identical to Rps24Ap and has similarity to rat S24 ribosomal protein /// Protein component of the small (40S) ribosomal subunit; identical to Rps24Bp and has similarity to rat S24 ribosomal protein 1.86212733116977 2915.626953125 3801.06677246094 RPS24B /// RPS24A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 3735 // structural constituent of ribosome // traceable author statement 4573.59521484375 3375.14086914063 2456.11303710938 3028.53833007813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER074W /GEN=RPS24A /DB_XREF=GI:6320918 /SEG=NC_001137:+306319,307192 /DEF=Protein component of the small (40S) ribosomal subunit; identical to Rps24Bp and has similarity to rat S24 ribosomal protein /NOTE=Rps24ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0000876 // RPS24A SGDID:S0000876, Chr V from 306319-306321,306788-307192, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019665 // cdna:GeneFinder chromosome:SGD1:V:304027:307192:1 // ensembl // 11 // --- /// YER074W // cdna:known chromosome:SGD1:V:306319:307192:1 gene:YER074W // ensembl // 11 // --- --- No cerevisiae_gene -1.26655410629133 -1.35508276311094 -1.85836690608373 -1.86212733116977 -1.51016586761369 Max fold change below threshold 4 1.86212733116977 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772827_at YDL201W.S1 Subunit of a tRNA methyltransferase complex composed of Trm8p and Trm82p that catalyzes 7-methylguanosine modification of tRNA 1.86193126903437 305.400100708008 554.202270507813 TRM8 30488 // tRNA methylation // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 5515 // protein binding // inferred from physical interaction /// 8176 // tRNA (guanine-N7-)-methyltransferase activity // inferred from mutant phenotype 568.216613769531 305.175933837891 305.624267578125 540.187927246094 0.000732421991415322 0.00195312988944352 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL201W /GEN=TRM8 /DB_XREF=GI:6320000 /SEG=NC_001136:+99562,100422 /DEF=Transfer RNA methyltransferase /NOTE=Trm8p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12403464]; go_function: tRNA (guanine-N7-)-methyltransferase activity [goid GO:0008176] [evidence IMP] [pmid 12403464]; go_process: tRNA methylation [goid GO:0030488] [evidence IMP] [pmid 12403464] --- --- --- --- --- --- S0002360 // TRM8 SGDID:S0002360, Chr IV from 99562-100422, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023585 // cdna:GeneFinder chromosome:SGD1:IV:99562:100422:1 // ensembl // 11 // --- /// GENSCAN00000024953 // cdna:Genscan chromosome:SGD1:IV:99562:100422:1 // ensembl // 11 // --- /// YDL201W // cdna:known chromosome:SGD1:IV:99562:100422:1 gene:YDL201W // ensembl // 11 // --- --- No cerevisiae_gene 1.16608295404097 -1.86193126903437 -1.46757707050388 -1.85919991979787 -1.05188691769979 Max fold change below threshold 4 1.86193126903437 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776501_at YMR138W.S1 GTP-binding protein involved in beta-tubulin (Tub2p) folding; isolated as mutant with increased chromosome loss and sensitivity to benomyl 1.86153314804117 271.461387634277 430.480438232422 CIN4 7017 // microtubule-based process // traceable author statement 5737 // cytoplasm // inferred from direct assay 5525 // GTP binding // traceable author statement 425.276672363281 228.455062866211 314.467712402344 435.684204101563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR138W /GEN=CIN4 /DB_XREF=GI:6323787 /SEG=NC_001145:+545154,545729 /DEF=GTP-binding protein involved in beta-tubulin (Tub2p) folding; isolated as mutant with increased chromosome loss and sensitivity to benomyl /NOTE=Cin4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: GTP binding [goid GO:0005525] [evidence TAS] [pmid 9215891]; go_process: microtubule-based process [goid GO:0007017] [evidence TAS] [pmid 9215891] --- --- --- --- --- --- S0004746 // CIN4 SGDID:S0004746, Chr XIII from 545154-545729, Verified ORF // sgd // 11 // --- /// GENSCAN00000018829 // cdna:Genscan chromosome:SGD1:XIII:545154:545729:1 // ensembl // 11 // --- /// YMR138W // cdna:known chromosome:SGD1:XIII:545154:545729:1 gene:YMR138W // ensembl // 11 // --- GENEFINDER00000021775 // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene 1.06031918846489 -1.86153314804117 1.40406126354153 -1.35236991141133 1.02447237860578 Max fold change below threshold 4 1.86153314804117 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773126_at YNL146C-A.S1 Identified by expression profiling and mass spectrometry 1.86144123458223 80.6430549621582 75.0965423583984 --- --- --- --- 66.0560836791992 119.592460632324 41.6936492919922 84.1370010375977 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL146C-A /GEN=LSM7 /DB_XREF=GI:33438864 /SEG=NC_001146:-351386,351580 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Ynl146c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028851 // YNL146C-A SGDID:S0028851, Chr XIV from 351580-351386, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// YNL146C-A // cdna:known chromosome:SGD1:XIV:351386:351580:-1 gene:YNL146C-A // ensembl // 10 // --- --- No cerevisiae_gene -1.36961634509619 1.81046852872968 -1.86144123458223 -1.58432002957069 1.27372069840241 Max fold change below threshold 4 1.86144123458223 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779431_at YHR035W.S1 Hypothetical protein 1.86123883002231 204.012275695801 125.136306762695 --- --- --- --- 113.245849609375 210.777572631836 197.246978759766 137.026763916016 0.000732421991415322 0.00195312988944352 0.000732421875 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR035W /GEN=RRM3 /DB_XREF=GI:6321824 /SEG=NC_001140:+178211,180103 /DEF=Hypothetical ORF /NOTE=Yhr035wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001077 // YHR035W SGDID:S0001077, Chr VIII from 178211-180103, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016583 // cdna:Genscan chromosome:SGD1:VIII:178316:180103:1 // ensembl // 11 // --- /// YHR035W // cdna:known chromosome:SGD1:VIII:178211:180103:1 gene:YHR035W // ensembl // 11 // --- --- No cerevisiae_gene 1.37059493268371 1.86123883002231 -1.04221401527944 1.74175900874196 1.20999369415011 Max fold change below threshold 4 1.86123883002231 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776009_at YOR361C.S1 Subunit of the core complex of translation initiation factor 3(eIF3), essential for translation; part of a subcomplex (Prt1p-Rpg1p-Nip1p) that stimulates binding of mRNA and tRNA(i)Met to ribosomes 1.86116021142497 1708.72534179688 1667.36737060547 PRT1 6413 // translational initiation // inferred from mutant phenotype /// 6413 // translational initiation // inferred from direct assay 5737 // cytoplasm // inferred from physical interaction /// 5852 // eukaryotic translation initiation factor 3 complex // inferred from physical interaction /// 5852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay 3743 // translation initiation factor activity // inferred from physical interaction /// 3743 // translation initiation factor activity // inferred from sequence similarity /// 3743 // translation initiation factor activity // inferred from direct assay 1645.61828613281 1668.03955078125 1749.4111328125 1689.11645507813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR361C /GEN=PRT1 /DB_XREF=GI:6324937 /SEG=NC_001147:-1015357,1017648 /DEF=Subunit of the core complex of translation initiation factor 3(eIF3), essential for translation; part of a subcomplex (Prt1p-Rpg1p-Nip1p) that stimulates binding of mRNA and tRNA(i)Met to ribosomes /NOTE=Prt1p; go_component: cytoplasm [goid GO:0005737] [evidence IPI] [pmid 9722586]; go_component: eukaryotic translation initiation factor 3 complex [goid GO:0005852] [evidence IDA,IPI] [pmid 9671501]; go_function: translation initiation factor activity [goid GO:0003743] [evidence IDA,IPI,ISS] [pmid 7876188]; go_process: translational initiation [goid GO:0006413] [evidence IMP] [pmid 3029094]; go_process: translational initiation [goid GO:0006413] [evidence IDA] [pmid 9671501] --- --- --- --- --- --- S0005888 // PRT1 SGDID:S0005888, Chr XV from 1017648-1015357, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017812 // cdna:Genscan chromosome:SGD1:XV:1015357:1017531:-1 // ensembl // 11 // --- /// GENEFINDER00000022689 // cdna:GeneFinder chromosome:SGD1:XV:1015357:1017531:-1 // ensembl // 11 // --- /// YOR361C // cdna:known chromosome:SGD1:XV:1015357:1017648:-1 gene:YOR361C // ensembl // 11 // --- --- No cerevisiae_gene 1.86116021142497 1.01362482711658 -1.20587599668174 1.06307224922956 1.02643272094863 Max fold change below threshold 4 1.86116021142497 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770593_at YMR265C.S1 Hypothetical protein 1.86092175467789 534.578689575195 550.116500854492 --- --- --- --- 511.881561279297 485.502960205078 583.654418945313 588.351440429688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR265C /GEN=CUE1 /DB_XREF=GI:6323921 /SEG=NC_001145:-796539,797924 /DEF=Hypothetical ORF /NOTE=Ymr265cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004878 // YMR265C SGDID:S0004878, Chr XIII from 797924-796539, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018936 // cdna:Genscan chromosome:SGD1:XIII:796539:797924:-1 // ensembl // 11 // --- /// GENEFINDER00000021814 // cdna:GeneFinder chromosome:SGD1:XIII:796539:797888:-1 // ensembl // 11 // --- /// YMR265C // cdna:known chromosome:SGD1:XIII:796539:797924:-1 gene:YMR265C // ensembl // 11 // --- --- No cerevisiae_gene 1.86092175467789 -1.05433252366386 1.11784770291656 1.14021379767351 1.14938979040245 Max fold change below threshold 4 1.86092175467789 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778427_at SPBC13G1.13.S1 --- 1.86037876919951 --- --- --- --- 2.03253889083862 3.06865286827087 3.7812922000885 3.77747082710266 0.533936023712158 0.5 0.274170011281967 0.000244141003349796 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13G1.13 /GEN=tfb2 /DEF=transcription factor TFIIH complex (PMID 14534314) --- --- --- --- --- --- SPBC13G1.13 // |tfb2|SPBC31F10.01|transcription factor TFIIH complex subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.16626823471341 1.50976342056843 1.82970693785376 1.86037876919951 1.85849867086385 Max fold change below threshold 3 1.86037876919951 Max fold change below threshold AAAAAP No 3 0 AAAP 3 1 0 No No x = 1
1771153_at YKL103C.S1 Vacuolar aminopeptidase, often used as a marker protein in studies of autophagy and cytosol to vacuole targeting (CVT) pathway 1.8600023823974 3372.99768066406 2866.48413085938 LAP4 7039 // vacuolar protein catabolism // inferred from sequence similarity 324 // vacuole (sensu Fungi) // inferred from direct assay 4250 // aminopeptidase I activity // inferred from direct assay 3051.62158203125 3666.61010742188 3079.38525390625 2681.3466796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL103C /GEN=LAP4 /DB_XREF=GI:6322746 /SEG=NC_001143:-245784,247328 /DEF=vacuolar aminopeptidase ysc1 /NOTE=Lap4p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 1400574]; go_function: aminopeptidase I activity [goid GO:0004250] [evidence IDA] [pmid 1400574]; go_process: vacuolar protein catabolism [goid GO:0007039] [evidence ISS] [pmid 2689224] --- --- --- --- --- --- S0001586 // LAP4 SGDID:S0001586, Chr XI from 247328-245784, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018340 // cdna:Genscan chromosome:SGD1:XI:245784:247280:-1 // ensembl // 11 // --- /// GENEFINDER00000023014 // cdna:GeneFinder chromosome:SGD1:XI:245784:247328:-1 // ensembl // 11 // --- /// YKL103C // cdna:known chromosome:SGD1:XI:245784:247328:-1 gene:YKL103C // ensembl // 11 // --- --- No cerevisiae_gene -1.8600023823974 1.20152843622939 1.02227955455932 1.00909800613499 -1.13809288636518 Max fold change below threshold 4 1.8600023823974 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778009_at SPCC1795.08c.S1 --- 1.85960797695916 --- --- --- --- 5.86604166030884 10.9085378646851 5.93469142913818 4.44059896469116 0.24609400331974 0.108154296875 0.334473013877869 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1795.08c /DEF=Myb family --- --- --- --- --- --- SPCC1795.08c // |||Myb family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.34306791597723 1.85960797695916 1.08409751242503 1.01170291191313 -1.321002348321 Max fold change below threshold 4 1.85960797695916 Max fold change below threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1778822_at YCR067C.S1 Integral endoplasmic reticulum membrane protein, functions as a positive regulator of Sar1p probably through inhibition of GTPase activation by Sec23p; binds Sec16p, participates in vesicle formation, similar to Sec12p 1.85919469998393 1110.55264282227 1754.24438476563 SED4 6888 // ER to Golgi transport // inferred from genetic interaction /// 6888 // ER to Golgi transport // inferred from mutant phenotype 5783 // endoplasmic reticulum // traceable author statement /// 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay --- 1762.92724609375 948.220886230469 1272.88439941406 1745.5615234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR067C /GEN=SED4 /DB_XREF=GI:6319912 /SEG=NC_001135:-233120,236317 /DEF=Sed4p is an integral ER membrane protein, which, along along with its close homolog, Sec12p, is involved in vesicle formation at the ER /NOTE=Sed4p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS] [pmid 7593162]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IGI,IMP] [pmid 11168590] --- --- --- --- --- --- S0000663 // SED4 SGDID:S0000663, Chr III from 236317-233120, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022505 // cdna:Genscan chromosome:SGD1:III:233120:236317:-1 // ensembl // 11 // --- /// GENEFINDER00000023315 // cdna:GeneFinder chromosome:SGD1:III:233120:236317:-1 // ensembl // 11 // --- /// YCR067C // cdna:known chromosome:SGD1:III:233120:236317:-1 gene:YCR067C // ensembl // 11 // --- --- No cerevisiae_gene -1.48462784793366 -1.85919469998393 -1.22027842684557 -1.38498613613716 -1.00994850220006 Max fold change below threshold 4 1.85919469998393 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772603_at YMR067C.S1 UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p 1.85902401961386 749.840423583984 1276.61712646484 UBX4 6511 // ubiquitin-dependent protein catabolism // inferred from mutant phenotype /// 30435 // sporulation // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1265.93896484375 680.969665527344 818.711181640625 1287.29528808594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR067C /GEN=KAR5 /DB_XREF=GI:6323712 /SEG=NC_001145:-404322,405572 /DEF=Hypothetical ORF /NOTE=Ymr067cp --- --- --- --- --- --- S0004671 // UBX4 SGDID:S0004671, Chr XIII from 405572-404322, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000018769 // cdna:Genscan chromosome:SGD1:XIII:404322:405572:-1 // ensembl // 10 // --- /// GENEFINDER00000022025 // cdna:GeneFinder chromosome:SGD1:XIII:404322:405572:-1 // ensembl // 10 // --- /// YMR067C // cdna:known chromosome:SGD1:XIII:404322:405572:-1 gene:YMR067C // ensembl // 10 // --- --- No cerevisiae_gene -1.74218671515626 -1.85902401961386 -1.28491793364626 -1.54625830602059 1.01686994700003 Max fold change below threshold 4 1.85902401961386 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771249_at YDL008W.S1 Catalytic core subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition 1.85833790752403 331.219161987305 206.399269104004 APC11 22 // mitotic spindle elongation // traceable author statement /// 70 // mitotic sister chromatid segregation // traceable author statement /// 7091 // mitotic metaphase/anaphase transition // traceable author statement /// 8054 // cyclin catabolism // traceable author statement /// 16567 // protein ubiquitination // inferred from physical interaction /// 31145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from physical interaction 5680 // anaphase-promoting complex // traceable author statement 4842 // ubiquitin-protein ligase activity // traceable author statement /// 4842 // ubiquitin-protein ligase activity // inferred from direct assay /// 5515 // protein binding // traceable author statement 201.429412841797 288.114410400391 374.323913574219 211.369125366211 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL008W /GEN=APC11 /DB_XREF=GI:6320196 /SEG=NC_001136:+433494,433991 /DEF=subunit of the Anaphase Promoting Complex; all known APC subunits co-immunoprecipitate with epitope-tagged Apc11p /NOTE=Apc11p; go_component: anaphase-promoting complex [goid GO:0005680] [evidence TAS] [pmid 10465783]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 10465783]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence IDA] [pmid 10230407]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 10465783]; go_process: cyclin catabolism [goid GO:0008054] [evidence TAS] [pmid 10465783]; go_process: mitotic metaphase/anaphase transition [goid GO:0007091] [evidence TAS] [pmid 10465783]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence TAS] [pmid 10465783]; go_process: mitotic spindle elongation [goid GO:0000022] [evidence TAS] [pmid 10465783]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10465783] --- --- --- --- --- --- S0002166 // APC11 SGDID:S0002166, Chr IV from 433494-433991, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023594 // cdna:GeneFinder chromosome:SGD1:IV:433494:433991:1 // ensembl // 11 // --- /// GENSCAN00000025092 // cdna:Genscan chromosome:SGD1:IV:433494:433991:1 // ensembl // 11 // --- /// YDL008W // cdna:known chromosome:SGD1:IV:433494:433991:1 gene:YDL008W // ensembl // 11 // --- --- No cerevisiae_gene 1.57943570117079 1.43034925404204 1.67318279890171 1.85833790752403 1.04934588441769 Max fold change below threshold 4 1.85833790752403 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771929_at YKR022C.S1 Protein required for cell viability 1.85833467543519 165.344085693359 253.498413085938 --- 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay --- 254.416412353516 148.888641357422 181.799530029297 252.580413818359 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR022C /GEN=VPS51 /DB_XREF=GI:6322874 /SEG=NC_001143:-481814,482782 /DEF=Protein required for cell viability /NOTE=Ykr022cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 14690591] --- --- --- --- --- --- S0001730 // YKR022C SGDID:S0001730, Chr XI from 482782-481814, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018436 // cdna:Genscan chromosome:SGD1:XI:481814:482782:-1 // ensembl // 11 // --- /// GENEFINDER00000023182 // cdna:GeneFinder chromosome:SGD1:XI:481814:482782:-1 // ensembl // 11 // --- /// YKR022C // cdna:known chromosome:SGD1:XI:481814:482782:-1 gene:YKR022C // ensembl // 11 // --- --- No cerevisiae_gene -1.85833467543519 -1.70876978951513 1.3621212043062 -1.39943382863815 -1.0072689663755 Max fold change below threshold 4 1.85833467543519 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772322_at SPBC354.02c.S1 --- 1.85810312551683 --- --- --- --- 8.39486408233643 6.0064377784729 8.87118625640869 4.51797533035278 0.0461426004767418 0.030273400247097 0.111571997404099 0.129638999700546 P P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC354.02c /GEN=sec61 /DEF=translocon (alpha subunit) (predicted) (PMID 9427389) --- --- --- --- --- --- Y11376 // S.pombe mRNA for SEC61 protein. // gb // 11 // --- /// SPBC354.02c // |sec61||translocon |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.36589446028284 -1.39764439289185 1.09929177033333 1.05673971244805 -1.85810312551683 Max fold change below threshold 4 1.85810312551683 Max fold change below threshold PAPPAA No 4 0 PPAA 2 2 0 No No 1 < x = 2
1780230_at YDR254W.S1 Outer kinetochore protein required for chromosome stability, interacts with kinetochore proteins Ctf19p, Ctf3p, and Iml3p; exhibits a two-hybrid interaction with Mif2p; association with CEN DNA requires Ctf19p 1.85770258657239 249.211196899414 387.542037963867 CHL4 7059 // chromosome segregation // inferred from mutant phenotype 942 // outer kinetochore of condensed nuclear chromosome // inferred from direct assay 3677 // DNA binding // inferred from direct assay 377.086639404297 295.436920166016 202.985473632813 397.997436523438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR254W /GEN=CHL4 /DB_XREF=GI:6320460 /SEG=NC_001136:+965105,966481 /DEF=Protein necessary for stability of ARS-CEN plasmids; suggested to be required for kinetochore function /NOTE=Chl4p; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IMP] [pmid 8243998]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 10563386]; go_process: chromosome segregation [goid GO:0007059] [evidence IMP] [pmid 9339342] --- --- --- --- --- --- S0002662 // CHL4 SGDID:S0002662, Chr IV from 965107-966483, Verified ORF // sgd // 11 // --- /// GENSCAN00000025294 // cdna:Genscan chromosome:SGD1:IV:965869:966483:1 // ensembl // 11 // --- /// YDR254W // cdna:known chromosome:SGD1:IV:965107:966483:1 gene:YDR254W // ensembl // 11 // --- --- No cerevisiae_gene -1.31880278626523 -1.27636938264994 1.35796299481037 -1.85770258657239 1.05545356142072 Max fold change below threshold 4 1.85770258657239 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779952_at YPL085W.S1 COPII vesicle coat protein required for ER transport vesicle budding and autophagosome formation; Sec16p is bound to the periphery of ER membranes and may act to stabilize initial COPII complexes; interacts with Sec23p, Sec24p and Sec31p 1.85740850144027 658.632141113281 503.78239440918 SEC16 6901 // vesicle coating // inferred from direct assay /// 6914 // autophagy // inferred from mutant phenotype /// 16192 // vesicle-mediated transport // inferred from direct assay 5789 // endoplasmic reticulum membrane // inferred from direct assay /// 19898 // extrinsic to membrane // traceable author statement /// 30127 // COPII vesicle coat // inferred from direct assay /// 30127 // COPII vesicle coat // inferred from physical interaction 5198 // structural molecule activity // inferred from physical interaction 467.503875732422 592.078063964844 725.186218261719 540.060913085938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL085W /GEN=SEC16 /DB_XREF=GI:6325172 /SEG=NC_001148:+387062,393649 /DEF=multidomain vesicle coat protein that interacts with Sec23p /NOTE=Sec16p; go_component: COPII vesicle coat [goid GO:0030127] [evidence IDA,IPI] [pmid 7593161]; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 7593161]; go_function: structural molecule activity [goid GO:0005198] [evidence IPI] [pmid 7593161]; go_process: autophagy [goid GO:0006914] [evidence IMP] [pmid 11694599]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IDA] [pmid 7593161] --- --- --- --- --- --- S0006006 // SEC16 SGDID:S0006006, Chr XVI from 387064-393651, Verified ORF // sgd // 10 // --- /// GENSCAN00000017124 // cdna:Genscan chromosome:SGD1:XVI:387064:393651:1 // ensembl // 10 // --- /// GENEFINDER00000020729 // cdna:GeneFinder chromosome:SGD1:XVI:387064:393651:1 // ensembl // 10 // --- /// YPL085W // cdna:known chromosome:SGD1:XVI:387064:393651:1 gene:YPL085W // ensembl // 10 // --- --- No cerevisiae_gene -1.85740850144027 1.26646664273586 1.00205396285581 1.55118760700239 1.15520093227001 Max fold change below threshold 4 1.85740850144027 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775018_at YLL018C-A.S1 Protein required for cytochrome c oxidase assembly, located in the cytosol and mitochondrial intermembrane space; putative copper metallochaperone that delivers copper to cytochrome c oxidase 1.85735727553803 766.229034423828 512.006774902344 COX19 8535 // cytochrome c oxidase complex assembly // inferred from direct assay /// 8535 // cytochrome c oxidase complex assembly // inferred from sequence similarity /// 30001 // metal ion transport // inferred from direct assay /// 30001 // metal ion transport // inferred from sequence similarity 5758 // mitochondrial intermembrane space // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 46873 // metal ion transporter activity // inferred from sequence similarity 481.635375976563 637.889099121094 894.568969726563 542.378173828125 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL018C-A /GEN=COX19 /DB_XREF=GI:6323010 /SEG=NC_001144:-108675,108971 /DEF=Protein required for cytochrome c oxidase assembly, located in the cytosol and mitochondrial intermembrane space; putative copper metallochaperone that delivers copper to cytochrome c oxidase /NOTE=Cox19p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 12171940]; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence IDA] [pmid 12171940]; go_function: metal ion transporter activity [goid GO:0046873] [evidence ISS] [pmid 12171940]; go_process: cytochrome c oxidase biogenesis [goid GO:0008535] [evidence IDA,ISS] [pmid 12171940]; go_process: metal ion transport [goid GO:0030001] [evidence IDA,ISS] [pmid 12171940] --- --- --- --- --- --- S0007245 // COX19 SGDID:S0007245, Chr XII from 108971-108675, reverse complement, Verified ORF // sgd // 11 // --- /// YLL018C-A // cdna:known chromosome:SGD1:XII:108675:108971:-1 gene:YLL018C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.15558183546708 1.32442326900866 1.3752427097112 1.85735727553803 1.12611780795462 Max fold change below threshold 4 1.85735727553803 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779517_at YKL221W.S1 Protein with similarity to mammalian monocarboxylate permeases, which are involved in transport of monocarboxylic acids across the plasma membrane; mutant is not deficient in monocarboxylate transport 1.85712329119891 35.7960033416748 26.0584392547607 MCH2 6810 // transport // inferred from sequence similarity 16020 // membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity /// 8028 // monocarboxylic acid transporter activity // inferred from genetic interaction /// 8028 // monocarboxylic acid transporter activity // inferred from mutant phenotype 23.2566795349121 28.4014854431152 43.1905212402344 28.8601989746094 0.000244141003349796 0.00292969006113708 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL221W /GEN=MCH2 /DB_XREF=GI:6322628 /SEG=NC_001143:+6108,7529 /DEF=monocarboxylate permease homologue /NOTE=Mch2p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 11536335]; go_function: monocarboxylic acid transporter activity [goid GO:0008028] [evidence IGI,IMP] [pmid 11536335]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 11536335]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 11536335] --- --- --- --- --- S0001704 // span:44-66,86-108,113-135,142-164,169-188,201-223,249-271,310-332,347-368,375-394,409-431 // numtm:11 S0001704 // MCH2 SGDID:S0001704, Chr XI from 6108-7529, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023127 // cdna:GeneFinder chromosome:SGD1:XI:6108:7529:1 // ensembl // 11 // --- /// GENSCAN00000018251 // cdna:Genscan chromosome:SGD1:XI:6675:7529:1 // ensembl // 11 // --- /// YKL221W // cdna:known chromosome:SGD1:XI:6108:7529:1 gene:YKL221W // ensembl // 11 // --- --- No cerevisiae_gene -1.73288901149049 1.22121842030286 1.72436665098033 1.85712329119891 1.24094236803175 Max fold change below threshold 4 1.85712329119891 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775722_at YHR069C.S1 Protein involved in rRNA processing; component of the exosome 3->5 exonuclease complex with Rrp41p, Rrp42p, Rrp43p and Dis3p 1.85691518778192 503.935638427734 795.824249267578 RRP4 6365 // 35S primary transcript processing // traceable author statement /// 6402 // mRNA catabolism // inferred from mutant phenotype 176 // nuclear exosome (RNase complex) // inferred from direct assay /// 177 // cytoplasmic exosome (RNase complex) // inferred from direct assay 175 // 3'-5'-exoribonuclease activity // traceable author statement 798.850036621094 430.202758789063 577.668518066406 792.798461914063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR069C /GEN=RRP4 /DB_XREF=GI:6321860 /SEG=NC_001140:-233580,234659 /DEF=Ribosomal RNA Processing /NOTE=Rrp4p; go_component: cytoplasmic exosome (RNase complex) [goid GO:0000177] [evidence IDA] [pmid 10465791]; go_component: nuclear exosome (RNase complex) [goid GO:0000176] [evidence IDA] [pmid 10465791]; go_function: 3'-5'-exoribonuclease activity [goid GO:0000175] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: mRNA catabolism [goid GO:0006402] [evidence IMP] [pmid 9482746] --- --- --- --- --- --- S0001111 // RRP4 SGDID:S0001111, Chr VIII from 234659-233580, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000016613 // cdna:Genscan chromosome:SGD1:VIII:233580:234659:-1 // ensembl // 10 // --- /// GENEFINDER00000020250 // cdna:GeneFinder chromosome:SGD1:VIII:233580:234659:-1 // ensembl // 10 // --- /// YHR069C // cdna:known chromosome:SGD1:VIII:233580:234659:-1 gene:YHR069C // ensembl // 10 // --- --- No cerevisiae_gene 1.22351197732275 -1.85691518778192 -1.17994368916477 -1.38288657186138 -1.00763318169465 Max fold change below threshold 4 1.85691518778192 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772672_at YBR106W.S1 Probable membrane protein, involved in phosphate transport; pho88 pho86 double null mutant exhibits enhanced synthesis of repressible acid phosphatase at high inorganic phosphate concentrations 1.85660648996266 1463.06176757813 1493.75408935547 PHO88 6817 // phosphate transport // inferred from genetic interaction /// 6817 // phosphate transport // inferred from sequence similarity /// 6817 // phosphate transport // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 16020 // membrane // inferred from direct assay 15114 // phosphate transporter activity // inferred from genetic interaction /// 15114 // phosphate transporter activity // inferred from sequence similarity /// 15114 // phosphate transporter activity // inferred from mutant phenotype 1434.64477539063 1330.89819335938 1595.22534179688 1552.86340332031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR106W /GEN=PHO88 /DB_XREF=GI:6319582 /SEG=NC_001134:+452615,453181 /DEF=Probable membrane protein, involved in phosphate transport; pho88 pho86 double null mutant exhibits enhanced synthesis of repressible acid phosphatase at high inorganic phosphate concentrations /NOTE=Pho88p; go_component: membrane [goid GO:0016020] [evidence IDA] [pmid 8709965]; go_function: phosphate transporter activity [goid GO:0015114] [evidence IGI,IMP,ISS] [pmid 8709965]; go_process: phosphate transport [goid GO:0006817] [evidence IGI,IMP,ISS] [pmid 8709965] --- --- --- --- --- S0000310 // span:28-47 // numtm:1 S0000310 // PHO88 SGDID:S0000310, Chr II from 452652-453218, Verified ORF // sgd // 11 // --- /// GENSCAN00000021224 // cdna:Genscan chromosome:SGD1:II:452652:453218:1 // ensembl // 11 // --- /// GENEFINDER00000022405 // cdna:GeneFinder chromosome:SGD1:II:452652:453218:1 // ensembl // 11 // --- /// YBR106W // cdna:known chromosome:SGD1:II:452652:453218:1 gene:YBR106W // ensembl // 11 // --- --- No cerevisiae_gene 1.85660648996266 -1.0779523051041 -1.01967032139465 1.11193054138613 1.08240271735385 Max fold change below threshold 4 1.85660648996266 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778092_at YGR200C.S1 Elongator protein, part of the six-subunit RNA polymerase II Elongator histone acetyltransferase complex; target of Kluyveromyces lactis zymocin 1.85645119846857 564.600952148438 896.035919189453 ELP2 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 8023 // transcription elongation factor complex // inferred from direct assay 16944 // RNA polymerase II transcription elongation factor activity // inferred from mutant phenotype /// 16944 // RNA polymerase II transcription elongation factor activity // inferred from physical interaction 843.588806152344 454.409362792969 674.792541503906 948.483032226563 0.00195312988944352 0.0107421996071935 0.00195312988944352 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR200C /GEN=ELP2 /DB_XREF=GI:6321639 /SEG=NC_001139:-899907,902273 /DEF=Elongator protein, part of the six-subunit RNA polymerase II Elongator histone acetyltransferase complex; target of Kluyveromyces lactis zymocin /NOTE=Elp2p; go_component: transcription elongation factor complex [goid GO:0008023] [evidence IDA] [pmid 11689709]; go_function: Pol II transcription elongation factor activity [goid GO:0016944] [evidence IMP,IPI] [pmid 11689709]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP] [pmid 11689709] --- --- --- --- --- --- S0003432 // ELP2 SGDID:S0003432, Chr VII from 902275-899909, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019496 // cdna:Genscan chromosome:SGD1:VII:899909:902275:-1 // ensembl // 11 // --- /// GENEFINDER00000021416 // cdna:GeneFinder chromosome:SGD1:VII:899909:902275:-1 // ensembl // 11 // --- /// YGR200C // cdna:known chromosome:SGD1:VII:899909:902275:-1 gene:YGR200C // ensembl // 11 // --- --- No cerevisiae_gene 1.3297340731834 -1.85645119846857 1.36983331378629 -1.25014542139461 1.12434283777739 Max fold change below threshold 4 1.85645119846857 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1779961_at YMR015C.S1 C-22 sterol desaturase, a cytochrome P450 enzyme that catalyzes the formation of the C-22(23) double bond in the sterol side chain in ergosterol biosynthesis; may be a target of azole antifungal drugs 1.8563300687149 3915.88500976563 5426.73217773438 ERG5 6696 // ergosterol biosynthesis // traceable author statement 5783 // endoplasmic reticulum // traceable author statement 249 // C-22 sterol desaturase activity // traceable author statement 6388.74755859375 4390.1689453125 3441.60107421875 4464.716796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR015C /GEN=ERG5 /DB_XREF=GI:6323657 /SEG=NC_001145:-300868,302484 /DEF=C-22 sterol desaturase, a cytochrome P450 enzyme that catalyzes the formation of the C-22(23) double bond in the sterol side chain in ergosterol biosynthesis; may be a target of azole antifungal drugs /NOTE=Erg5p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS]; go_function: C-22 sterol desaturase activity [goid GO:0000249] [evidence TAS]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence TAS] --- --- --- p450 // CP14_CHICK // Animalia; CYP1A4; chi; CP14_CHICK; Gallus gallus; P79760 // 1.0E-173 --- --- S0004617 // ERG5 SGDID:S0004617, Chr XIII from 302484-300868, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018729 // cdna:Genscan chromosome:SGD1:XIII:300868:302484:-1 // ensembl // 11 // --- /// GENEFINDER00000021849 // cdna:GeneFinder chromosome:SGD1:XIII:300868:302484:-1 // ensembl // 11 // --- /// YMR015C // cdna:known chromosome:SGD1:XIII:300868:302484:-1 gene:YMR015C // ensembl // 11 // --- --- No cerevisiae_gene -1.54004777104737 -1.45523956781098 -1.22488989087431 -1.8563300687149 -1.43094127785786 Max fold change below threshold 4 1.8563300687149 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779680_at YMR310C.S1 Hypothetical protein 1.85624768992569 283.524353027344 521.638229370117 --- --- 5634 // nucleus // inferred from direct assay --- 489.831634521484 263.882690429688 303.166015625 553.44482421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR310C /GEN=NIP1 /DB_XREF=GI:6323970 /SEG=NC_001145:-895715,896668 /DEF=Hypothetical ORF /NOTE=Ymr310cp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004927 // YMR310C SGDID:S0004927, Chr XIII from 896668-895715, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018976 // cdna:Genscan chromosome:SGD1:XIII:895715:896257:-1 // ensembl // 10 // --- /// YMR310C // cdna:known chromosome:SGD1:XIII:895715:896668:-1 gene:YMR310C // ensembl // 11 // --- --- No cerevisiae_gene 1.4805631842843 -1.85624768992569 -1.23636679172475 -1.61572079084016 1.12986745896763 Max fold change below threshold 4 1.85624768992569 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773635_at YMR165C.S1 Protein of unknown function involved in respiration and plasmid maintenance; proposed to be involved in cell wall integrity 1.856235066981 1064.61239624023 1184.79534912109 SMP2 6276 // plasmid maintenance // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 1140.31384277344 990.579284667969 1138.6455078125 1229.27685546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR165C /GEN=SMP2 /DB_XREF=GI:6323817 /SEG=NC_001145:-590039,592627 /DEF=involved in plasmid maintenance /NOTE=Smp2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 8437575]; go_process: plasmid maintenance [goid GO:0006276] [evidence IMP] [pmid 8437575] --- --- --- --- --- --- S0004775 // SMP2 SGDID:S0004775, Chr XIII from 592627-590039, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018851 // cdna:Genscan chromosome:SGD1:XIII:590039:592627:-1 // ensembl // 11 // --- /// GENEFINDER00000021944 // cdna:GeneFinder chromosome:SGD1:XIII:590039:592414:-1 // ensembl // 11 // --- /// YMR165C // cdna:known chromosome:SGD1:XIII:590039:592627:-1 gene:YMR165C // ensembl // 11 // --- --- No cerevisiae_gene -1.856235066981 -1.15115858005819 1.53563113482049 -1.00146519259022 1.07801625250724 Max fold change below threshold 4 1.856235066981 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771884_at YGL063W.S1 Putative pseudouridine synthase 1.85621894144526 118.092845916748 85.4822158813477 PUS2 6400 // tRNA modification // inferred from sequence similarity --- 16439 // tRNA-pseudouridine synthase activity // inferred from sequence similarity 77.5548934936523 92.2268295288086 143.958862304688 93.409538269043 0.000244141003349796 0.014160200022161 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL063W /GEN=PUS2 /DB_XREF=GI:6321375 /SEG=NC_001139:+383655,384767 /DEF=pseudouridine synthase 2 /NOTE=Pus2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: pseudouridylate synthase activity [goid GO:0004730] [evidence ISS] [pmid 10356324]; go_process: tRNA modification [goid GO:0006400] [evidence ISS] [pmid 10356324] --- --- --- --- --- --- S0003031 // PUS2 SGDID:S0003031, Chr VII from 383657-384769, Verified ORF // sgd // 11 // --- /// GENSCAN00000019298 // cdna:Genscan chromosome:SGD1:VII:383657:384769:1 // ensembl // 11 // --- /// GENEFINDER00000021764 // cdna:GeneFinder chromosome:SGD1:VII:383657:384769:1 // ensembl // 11 // --- /// YGL063W // cdna:known chromosome:SGD1:VII:383657:384769:1 gene:YGL063W // ensembl // 11 // --- YGL063C-A // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene 1.76235389598412 1.18918130596565 1.48067110825826 1.85621894144526 1.20443126231214 Max fold change below threshold 4 1.85621894144526 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1776419_at YMR256C.S1 Subunit VII of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain 1.85567260405069 6841.3076171875 4320.92065429688 COX7 6123 // mitochondrial electron transport, cytochrome c to oxygen // inferred from direct assay /// 9060 // aerobic respiration // traceable author statement 5751 // respiratory chain complex IV (sensu Eukaryota) // inferred from physical interaction 4129 // cytochrome-c oxidase activity // inferred from direct assay 4822.572265625 8949.115234375 4733.5 3819.26904296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR256C /GEN=COX7 /DB_XREF=GI:6323912 /SEG=NC_001145:-778944,779126 /DEF=Subunit VII of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain /NOTE=Cox7p; go_component: respiratory chain complex IV (sensu Eukarya) [goid GO:0005751] [evidence IPI] [pmid 1331058]; go_function: cytochrome-c oxidase activity [goid GO:0004129] [evidence IDA] [pmid 1331058]; go_process: aerobic respiration [goid GO:0009060] [evidence TAS] [pmid 10385027] --- --- --- --- --- S0004869 // span:27-49 // numtm:1 S0004869 // COX7 SGDID:S0004869, Chr XIII from 779126-778944, reverse complement, Verified ORF // sgd // 11 // --- /// YMR256C // cdna:known chromosome:SGD1:XIII:778944:779126:-1 gene:YMR256C // ensembl // 11 // --- --- No cerevisiae_gene -1.31263804931742 1.85567260405069 -1.07890693009431 -1.0188174217017 -1.26269508939239 Max fold change below threshold 4 1.85567260405069 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775010_at SPAC17A5.05c.S1 --- 1.85553092081822 --- --- --- --- 0.756609618663788 0.407759100198746 0.619421482086182 0.449079960584641 0.919434010982513 0.985840022563934 0.919434010982513 0.919434010982513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A5.05c /DEF=sequence orphan --- --- --- --- --- --- SPAC17A5.05c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.78498775842753 -1.85553092081822 -1.66871047653966 -1.22147784754827 -1.68479933435192 Max fold change below threshold 0 1.85553092081822 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776731_at YBR123C.S1 One of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part of the TauA globular domain of TFIIIC that binds DNA at the BoxA promoter sites of tRNA and similar genes; human homolog is TFIIIC-63 1.85540707284099 525.879104614258 900.002807617188 TFC1 6384 // transcription initiation from RNA polymerase III promoter // traceable author statement 127 // transcription factor TFIIIC complex // traceable author statement 3709 // RNA polymerase III transcription factor activity // traceable author statement 889.28271484375 542.708374023438 509.049835205078 910.722900390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR123C /GEN=TFC1 /DB_XREF=GI:6319600 /SEG=NC_001134:-484698,486647 /DEF=transcription factor tau (TFIIIC) subunit 95 /NOTE=Tfc1p; go_component: transcription factor TFIIIC complex [goid GO:0000127] [evidence TAS] [pmid 10384303]; go_function: RNA polymerase III transcription factor activity [goid GO:0003709] [evidence TAS] [pmid 10384303]; go_process: transcription initiation from Pol III promoter [goid GO:0006384] [evidence TAS] [pmid 10384303] --- --- --- --- --- --- S0000327 // TFC1 SGDID:S0000327, Chr II from 486685-484736, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021239 // cdna:Genscan chromosome:SGD1:II:484736:486685:-1 // ensembl // 11 // --- /// GENEFINDER00000022179 // cdna:GeneFinder chromosome:SGD1:II:484736:486514:-1 // ensembl // 11 // --- /// YBR123C // cdna:known chromosome:SGD1:II:484736:486685:-1 gene:YBR123C // ensembl // 11 // --- --- No cerevisiae_gene -1.85540707284099 -1.63860142464901 1.02315166882544 -1.74694627783445 1.02410952691309 Max fold change below threshold 4 1.85540707284099 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772673_at SPBC14F5.10c.S1 --- 1.85535851755446 --- --- --- --- 4.46839046478271 8.29046630859375 3.62819504737854 4.04147529602051 0.39111328125 0.2392578125 0.533936023712158 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14F5.10c /DEF=zinc finger protein --- --- --- --- --- --- SPBC14F5.10c // |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.70954905504433 1.85535851755446 -1.13252642782912 -1.23157393867544 -1.10563349705059 Max fold change below threshold 4 1.85535851755446 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769338_at YKL055C.S1 Mitochondrial 3-oxoacyl-[acyl-carrier-protein] reductase, may comprise a type II mitochondrial fatty acid synthase along with Mct1p 1.85483663369156 75.5213775634766 89.4746780395508 OAR1 6631 // fatty acid metabolism // inferred from mutant phenotype /// 6631 // fatty acid metabolism // inferred from sequence similarity /// 9060 // aerobic respiration // inferred from mutant phenotype 5739 // mitochondrion // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from sequence similarity 4316 // 3-oxoacyl-[acyl-carrier protein] reductase activity // inferred from mutant phenotype /// 4316 // 3-oxoacyl-[acyl-carrier protein] reductase activity // inferred from sequence similarity 87.0754623413086 52.956428527832 98.0863265991211 91.873893737793 0.0239257998764515 0.0239257998764515 0.0239257998764515 0.0239257998764515 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL055C /GEN=OAR1 /DB_XREF=GI:6322795 /SEG=NC_001143:-334966,335802 /DEF=Mitochondrial 3-oxoacyl-[acyl-carrier-protein] reductase, may comprise a type II mitochondrial fatty acid synthase along with Mct1p /NOTE=Oar1p; go_component: mitochondrion [goid GO:0005739] [evidence IMP,ISS] [pmid 9388293]; go_function: 3-oxoacyl-[acyl-carrier protein] reductase activity [goid GO:0004316] [evidence IMP,ISS] [pmid 9388293]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 9388293]; go_process: fatty acid metabolism [goid GO:0006631] [evidence IMP,ISS] [pmid 9388293] --- --- --- --- --- --- S0001538 // OAR1 SGDID:S0001538, Chr XI from 335802-334966, reverse complement, Verified ORF // sgd // 11 // --- /// YKL055C // cdna:known chromosome:SGD1:XI:334966:335802:-1 gene:YKL055C // ensembl // 11 // --- --- No cerevisiae_gene 1.75758061640274 -1.64428502378224 1.85483663369156 1.12645197581212 1.05510658533946 Max fold change below threshold 4 1.85483663369156 Max fold change below threshold PPPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1780148_at YPL113C.S1 Putative dehydrogenase 1.85448167973848 283.096405029297 346.101135253906 --- 8152 // metabolism // inferred from sequence similarity --- 16491 // oxidoreductase activity // inferred from sequence similarity 334.12939453125 244.131805419922 322.061004638672 358.072875976563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL113C /GEN=BEM3 /DB_XREF=GI:6325144 /SEG=NC_001148:-335952,337142 /DEF=Putative dehydrogenase /NOTE=Ypl113cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: oxidoreductase activity [goid GO:0016491] [evidence ISS] [pmid 12525494]; go_process: metabolism [goid GO:0008152] [evidence ISS] [pmid 12525494] --- --- --- --- --- --- S0006034 // YPL113C SGDID:S0006034, Chr XVI from 337142-335952, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017103 // cdna:Genscan chromosome:SGD1:XVI:335952:337142:-1 // ensembl // 11 // --- /// GENEFINDER00000020739 // cdna:GeneFinder chromosome:SGD1:XVI:335952:336419:-1 // ensembl // 10 // --- /// YPL113C // cdna:known chromosome:SGD1:XVI:335952:337142:-1 gene:YPL113C // ensembl // 11 // --- YPL114W // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene -1.59158199914728 -1.36864344224435 1.85448167973848 -1.0374723723728 1.07165930875044 Max fold change below threshold 4 1.85448167973848 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775924_at YPL116W.S1 Trichostatin A-insensitive homodimeric histone deacetylase (HDAC) with specificity in vitro for histones H3, H4, H2A, and H2B; similar to Hda1p, Rpd3p, Hos1p, and Hos2p; deletion results in increased histone acetylation at rDNA repeats 1.85433468507214 379.678588867188 699.316162109375 HOS3 16575 // histone deacetylation // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 4407 // histone deacetylase activity // inferred from direct assay 685.795532226563 389.5234375 369.833740234375 712.836791992188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL116W /GEN=HOS3 /DB_XREF=GI:6325141 /SEG=NC_001148:+329605,331698 /DEF=Trichostatin A-insensitive homodimeric histone deacetylase (HDAC) with specificity in vitro for histones H3, H4, H2A, and H2B; similar to Hda1p, Rpd3p, Hos1p, and Hos2p; deletion results in increased histone acetylation at rDNA repeats /NOTE=Hos3p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 14562095]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: histone deacetylase activity [goid GO:0004407] [evidence IDA] [pmid 10535926]; go_process: histone deacetylation [goid GO:0016575] [evidence IDA] [pmid 10535926] --- --- --- --- --- --- S0006037 // HOS3 SGDID:S0006037, Chr XVI from 329605-331698, Verified ORF // sgd // 11 // --- /// GENSCAN00000017101 // cdna:Genscan chromosome:SGD1:XVI:329605:331698:1 // ensembl // 11 // --- /// GENEFINDER00000020966 // cdna:GeneFinder chromosome:SGD1:XVI:329986:331698:1 // ensembl // 11 // --- /// YPL116W // cdna:known chromosome:SGD1:XVI:329605:331698:1 gene:YPL116W // ensembl // 11 // --- --- No cerevisiae_gene 1.26579800026237 -1.76060145861329 1.02253367145855 -1.85433468507214 1.03943049858874 Max fold change below threshold 4 1.85433468507214 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777119_at YDR386W.S1 Helix-hairpin-helix protein, involved in DNA repair and replication fork stability; functions as an endonuclease in complex with Mms4p; interacts with Rad54p 1.85414866055857 127.86865234375 225.775413513184 MUS81 6281 // DNA repair // inferred from genetic interaction /// 7131 // meiotic recombination // inferred from genetic interaction 5634 // nucleus // inferred from mutant phenotype /// 5634 // nucleus // inferred from physical interaction 4519 // endonuclease activity // inferred from direct assay 212.511306762695 114.613952636719 141.123352050781 239.039520263672 0.000244141003349796 0.014160200022161 0.014160200022161 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR386W /GEN=MUS81 /DB_XREF=GI:6320594 /SEG=NC_001136:+1246072,1247970 /DEF=Mms and UV Sensitive; Mus81p and Rad54p are found together in a complex from whole-cell extracts /NOTE=Mus81p; go_component: nucleus [goid GO:0005634] [evidence IMP,IPI] [pmid 10905349]; go_function: endonuclease activity [goid GO:0004519] [evidence IDA] [pmid 11641278]; go_process: DNA repair [goid GO:0006281] [evidence IGI] [pmid 12032096]; go_process: meiotic recombination [goid GO:0007131] [evidence IGI] [pmid 11641278] --- --- --- --- --- --- S0002794 // MUS81 SGDID:S0002794, Chr IV from 1246074-1247972, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023645 // cdna:GeneFinder chromosome:SGD1:IV:1246074:1247972:1 // ensembl // 11 // --- /// GENSCAN00000025406 // cdna:Genscan chromosome:SGD1:IV:1246074:1247972:1 // ensembl // 11 // --- /// YDR386W // cdna:known chromosome:SGD1:IV:1246074:1247972:1 gene:YDR386W // ensembl // 11 // --- --- No cerevisiae_gene -1.52148481518467 -1.85414866055857 1.04876348993666 -1.50585501034744 1.1248320096709 Max fold change below threshold 4 1.85414866055857 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1771236_at YGR036C.S1 Dolichyl pyrophosphate (Dol-P-P) phosphatase with a luminally oriented active site in the ER, cleaves the anhydride linkage in Dol-P-P, required for Dol-P-P-linked oligosaccharide intermediate synthesis and protein N-glycosylation 1.85403881015104 317.302917480469 232.129486083984 CAX4 6487 // N-linked glycosylation // inferred from mutant phenotype /// 8610 // lipid biosynthesis // inferred from genetic interaction /// 8610 // lipid biosynthesis // inferred from mutant phenotype 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay 16462 // pyrophosphatase activity // inferred from direct assay 217.671813964844 257.428741455078 377.177093505859 246.587158203125 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR036C /GEN=CAX4 /DB_XREF=GI:6321473 /SEG=NC_001139:-558151,558870 /DEF=CAX4p contains 3 short stretches of amino acids that are characteristic for a wide variety of phosphatases, including lipid phosphatases and a protein phosphatase. /NOTE=Cax4p; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA] [pmid 11504728]; go_function: pyrophosphatase activity [goid GO:0016462] [evidence IDA] [pmid 11504728]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IMP] [pmid 10024662]; go_process: lipid biosynthesis [goid GO:0008610] [evidence IGI,IMP] [pmid 11504728] --- --- --- --- --- S0003268 // span:32-54,136-158,173-195 // numtm:3 S0003268 // CAX4 SGDID:S0003268, Chr VII from 558872-558153, reverse complement, Verified ORF // sgd // 11 // --- /// YGR036C // cdna:known chromosome:SGD1:VII:558153:558872:-1 gene:YGR036C // ensembl // 11 // --- --- No cerevisiae_gene 1.85403881015104 1.18264618999617 1.55068284387193 1.7327787490519 1.13283917523172 Max fold change below threshold 4 1.85403881015104 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769852_at YBR142W.S1 Essential nucleolar protein, putative DEAD-box RNA helicase required for maintenance of M1 dsRNA virus; involved in biogenesis of large (60S) ribosomal subunits 1.85344640820637 441.688995361328 615.092834472656 MAK5 27 // ribosomal large subunit assembly and maintenance // traceable author statement /// 6364 // rRNA processing // traceable author statement 5730 // nucleolus // inferred from direct assay 4004 // ATP-dependent RNA helicase activity // traceable author statement 556.970153808594 451.630340576172 431.747650146484 673.215515136719 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR142W /GEN=MAK5 /DB_XREF=GI:6319618 /SEG=NC_001134:+528273,530594 /DEF=Necessary for maintenance of dsRNA killer plasmids. Is predicted to encode an DEAD-box RNA helicase /NOTE=Mak5p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 13680366]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 10690410]; go_process: rRNA processing [goid GO:0006364] [evidence TAS] [pmid 10690410]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0000346 // MAK5 SGDID:S0000346, Chr II from 528311-530632, Verified ORF // sgd // 11 // --- /// GENSCAN00000021254 // cdna:Genscan chromosome:SGD1:II:528311:530632:1 // ensembl // 11 // --- /// GENEFINDER00000022279 // cdna:GeneFinder chromosome:SGD1:II:528311:530632:1 // ensembl // 11 // --- /// YBR142W // cdna:known chromosome:SGD1:II:528311:530632:1 gene:YBR142W // ensembl // 11 // --- --- No cerevisiae_gene 1.85344640820637 -1.23324343775937 -1.02556575881749 -1.29003632936884 1.20871021639711 Max fold change below threshold 4 1.85344640820637 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777580_at YLR154C.S1 Ribonuclease H2 subunit, required for RNase H2 activity 1.85336812453832 807.156463623047 593.963317871094 RNH203 6260 // DNA replication // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4523 // ribonuclease H activity // inferred from physical interaction 576.986511230469 888.375122070313 725.937805175781 610.940124511719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR154C /GEN=RNH203 /DB_XREF=GI:6323183 /SEG=NC_001144:-447983,448315 /DEF=Ribonuclease H2 subunit, required for RNase H2 activity /NOTE=Rnh203p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: ribonuclease H activity [goid GO:0004523] [evidence IPI] [pmid 14734815]; go_process: DNA replication [goid GO:0006260] [evidence IPI] [pmid 14734815] --- --- --- --- --- --- S0004144 // RNH203 SGDID:S0004144, Chr XII from 448315-447983, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017939 // cdna:Genscan chromosome:SGD1:XII:447983:448315:-1 // ensembl // 11 // --- /// GENEFINDER00000024876 // cdna:GeneFinder chromosome:SGD1:XII:447983:448315:-1 // ensembl // 11 // --- /// YLR154C // cdna:known chromosome:SGD1:XII:447983:448315:-1 gene:YLR154C // ensembl // 11 // --- --- No cerevisiae_gene 1.85336812453832 1.53968091936115 -1.39747399549064 1.25815385809915 1.05884645935455 Max fold change below threshold 4 1.85336812453832 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769648_at YBR260C.S1 GTPase-activating protein (RhoGAP) for Rho3p and Rho4p, possibly involved in control of actin cytoskeleton organization 1.85276601764443 447.955917358398 739.828948974609 RGD1 7231 // osmosensory signaling pathway // inferred from genetic interaction 5933 // bud // inferred from direct assay /// 30479 // actin cortical patch // inferred from direct assay 5100 // Rho GTPase activator activity // inferred from direct assay 720.24169921875 388.738616943359 507.173217773438 759.416198730469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR260C /GEN=RGD1 /DB_XREF=GI:6319737 /SEG=NC_001134:-732596,734596 /DEF=Related GAP Domain /NOTE=Rgd1p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10931290]; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 10931290]; go_function: Rho GTPase activator activity [goid GO:0005100] [evidence IDA] [pmid 10526184]; go_process: osmosensory signaling pathway [goid GO:0007231] [evidence IGI] [pmid 10590461] --- --- --- --- --- --- S0000464 // RGD1 SGDID:S0000464, Chr II from 734634-732634, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000021348 // cdna:Genscan chromosome:SGD1:II:732634:734634:-1 // ensembl // 10 // --- /// GENEFINDER00000022383 // cdna:GeneFinder chromosome:SGD1:II:732634:734634:-1 // ensembl // 10 // --- /// YBR260C // cdna:known chromosome:SGD1:II:732634:734634:-1 gene:YBR260C // ensembl // 10 // --- --- No cerevisiae_gene -1.12073099327729 -1.85276601764443 1.30301870099759 -1.42010988352404 1.05439076847982 Max fold change below threshold 4 1.85276601764443 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772343_at YGL229C.S1 Protein required for function of the Sit4p protein phosphatase, member of a family of similar proteins that form complexes with Sit4p, including Sap155p, Sap185p, and Sap190p 1.85147478801465 296.292930603027 274.009918212891 SAP4 82 // G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 82 // G1/S transition of mitotic cell cycle // inferred from genetic interaction 5737 // cytoplasm // inferred from sequence similarity /// 5739 // mitochondrion // inferred from direct assay 4722 // protein serine/threonine phosphatase activity // inferred from sequence similarity 276.948150634766 341.719604492188 250.866256713867 271.071685791016 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL229C /GEN=SAP4 /DB_XREF=GI:6321208 /SEG=NC_001139:-64502,66958 /DEF=Protein required for function of the Sit4p protein phosphatase, member of a family of similar proteins that form complexes with Sit4p, including Sap155p, Sap185p, and Sap190p /NOTE=Sap4p; go_component: cytoplasm [goid GO:0005737] [evidence ISS] [pmid 8649382]; go_function: protein serine/threonine phosphatase activity [goid GO:0004722] [evidence ISS] [pmid 8649382]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IGI,IMP] [pmid 8649382] --- --- --- --- --- --- S0003198 // SAP4 SGDID:S0003198, Chr VII from 66959-64503, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019177 // cdna:Genscan chromosome:SGD1:VII:64503:66959:-1 // ensembl // 11 // --- /// GENEFINDER00000021510 // cdna:GeneFinder chromosome:SGD1:VII:64503:66959:-1 // ensembl // 11 // --- /// YGL229C // cdna:known chromosome:SGD1:VII:64503:66959:-1 gene:YGL229C // ensembl // 11 // --- --- No cerevisiae_gene 1.6376620833612 1.23387574067191 -1.85147478801465 -1.10396732610654 -1.02167863761426 Max fold change below threshold 4 1.85147478801465 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779747_at YOR071C.S1 Hypothetical protein 1.85141613511306 27.5545272827148 28.4573936462402 --- 6810 // transport // inferred from sequence similarity 16020 // membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity 24.0627632141113 29.6619548797607 25.4470996856689 32.8520240783691 0.00805663969367743 0.000244140625 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR071C /GEN=GYP1 /DB_XREF=GI:6324645 /SEG=NC_001147:-459481,461277 /DEF=Hypothetical ORF /NOTE=Yor071cp; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 9235906]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 9235906]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 9235906] --- --- --- --- --- S0005597 // span:43-62,77-99,112-134,167-189,196-218,274-296,372-389,399-421,442-464,484-506 // numtm:10 S0005597 // YOR071C SGDID:S0005597, Chr XV from 461277-459481, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENEFINDER00000022850 // cdna:GeneFinder chromosome:SGD1:XV:459481:461277:-1 // ensembl // 10 // --- /// YOR071C // cdna:known chromosome:SGD1:XV:459481:461277:-1 gene:YOR071C // ensembl // 10 // --- GENSCAN00000017513 // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene -1.85141613511306 1.23269113425701 1.70272732216016 1.05753023704052 1.36526398843103 Max fold change below threshold 4 1.85141613511306 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1774612_at YPL150W.S1 Hypothetical protein 1.85131648583197 342.536819458008 457.780258178711 --- --- --- 4672 // protein kinase activity // inferred from sequence similarity 430.699249267578 288.187408447266 396.88623046875 484.861267089844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL150W /GEN=PRP46 /DB_XREF=GI:6325107 /SEG=NC_001148:+268187,270892 /DEF=Hypothetical ORF /NOTE=Ypl150wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 9020587]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 4.0E-67 /// hanks // 2.2.10 // CaMK Group; CaMK II KIN1/SNF1/Nim1; nim1+ // 3.0E-75 --- --- S0006071 // YPL150W SGDID:S0006071, Chr XVI from 268187-270892, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017074 // cdna:Genscan chromosome:SGD1:XVI:268187:270892:1 // ensembl // 11 // --- /// GENEFINDER00000020760 // cdna:GeneFinder chromosome:SGD1:XVI:270227:270892:1 // ensembl // 11 // --- /// YPL150W // cdna:known chromosome:SGD1:XVI:268187:270892:1 gene:YPL150W // ensembl // 11 // --- --- No cerevisiae_gene -1.85131648583197 -1.49451099056741 1.44619760021024 -1.0851957467985 1.12575368523249 Max fold change below threshold 4 1.85131648583197 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775704_at YFL048C.S1 Integral membrane component of endoplasmic reticulum-derived COPII-coated vesicles, which function in ER to Golgi transport 1.85107217800604 363.753402709961 650.965454101563 EMP47 6888 // ER to Golgi transport // inferred from physical interaction 5794 // Golgi apparatus // traceable author statement /// 30138 // COPII-coated vesicle // inferred from direct assay --- 623.692016601563 390.571258544922 336.935546875 678.238891601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL048C /GEN=EMP47 /DB_XREF=GI:14318471 /SEG=NC_001138:-38843,40180 /DEF=Integral membrane component of endoplasmic reticulum-derived COPII-coated vesicles, which function in ER to Golgi transport /NOTE=Emp47p; go_component: COPII-coated vesicle [goid GO:0030138] [evidence IDA] [pmid 11157978]; go_component: Golgi apparatus [goid GO:0005794] [evidence TAS] [pmid 11713678]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IPI] [pmid 11157978] --- --- --- --- scop // a.2.7.Seryl-tRNA synthetase (SerRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) // 0.620000004768372 S0001846 // span:414-433 // numtm:1 S0001846 // EMP47 SGDID:S0001846, Chr VI from 40180-38843, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000018538 // cdna:GeneFinder chromosome:SGD1:VI:38843:40162:-1 // ensembl // 10 // --- /// GENSCAN00000023201 // cdna:Genscan chromosome:SGD1:VI:38843:40162:-1 // ensembl // 10 // --- /// YFL048C // cdna:known chromosome:SGD1:VI:38843:40180:-1 gene:YFL048C // ensembl // 10 // --- --- No cerevisiae_gene -1.15448048564561 -1.59687125705341 -1.53281784245648 -1.85107217800604 1.08745802984175 Max fold change below threshold 4 1.85107217800604 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771609_at YFR025C.S1 Histidinolphosphatase, catalyzes the eighth step in histidine biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts; transcription is regulated by general amino acid control 1.85091895492628 411.054916381836 294.88069152832 HIS2 105 // histidine biosynthesis // traceable author statement 5622 // intracellular // traceable author statement 4401 // histidinol-phosphatase activity // traceable author statement 273.04443359375 316.726715087891 505.383117675781 316.716949462891 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR025C /GEN=HIS2 /DB_XREF=GI:14318548 /SEG=NC_001138:-203731,204738 /DEF=Histidinolphosphatase, catalyzes the eighth step in histidine biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts; transcription is regulated by general amino acid control /NOTE=His2p; go_component: cell [goid GO:0005623] [evidence TAS] [pmid 8852895]; go_function: histidinol-phosphatase activity [goid GO:0004401] [evidence TAS] [pmid 8852895]; go_process: histidine biosynthesis [goid GO:0000105] [evidence TAS] [pmid 8852895] --- --- --- --- --- --- S0001921 // HIS2 SGDID:S0001921, Chr VI from 204738-203731, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018588 // cdna:GeneFinder chromosome:SGD1:VI:203731:204738:-1 // ensembl // 11 // --- /// GENSCAN00000023266 // cdna:Genscan chromosome:SGD1:VI:203731:204738:-1 // ensembl // 11 // --- /// YFR025C // cdna:known chromosome:SGD1:VI:203731:204738:-1 gene:YFR025C // ensembl // 11 // --- --- No cerevisiae_gene 1.3026382791334 1.1599823183326 1.60084954711684 1.85091895492628 1.1599465526337 Max fold change below threshold 4 1.85091895492628 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779769_at YLR450W.S1 One of two isozymes of HMG-CoA reductase that convert HMG-CoA to mevalonate, a rate-limiting step in sterol biosynthesis; overproduction induces assembly of peripheral ER membrane arrays and short nuclear-associated membrane stacks 1.85090420608278 1507.66192626953 1967.90368652344 HMG2 6696 // ergosterol biosynthesis // traceable author statement 5635 // nuclear membrane // traceable author statement /// 5759 // mitochondrial matrix // traceable author statement /// 5789 // endoplasmic reticulum membrane // traceable author statement 4420 // hydroxymethylglutaryl-CoA reductase (NADPH) activity // traceable author statement 1837.02197265625 1310.79309082031 1704.53076171875 2098.78540039063 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR450W /GEN=HMG2 /DB_XREF=GI:6323483 /SEG=NC_001144:+1032623,1035760 /DEF=One of two isozymes of HMG-CoA reductase that convert HMG-CoA to mevalonate, a rate-limiting step in sterol biosynthesis; overproduction induces assembly of peripheral ER membrane arrays and short nuclear-associated membrane stacks /NOTE=Hmg2p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence TAS] [pmid 8744950]; go_component: mitochondrial matrix [goid GO:0005759] [evidence TAS]; go_component: nuclear membrane [goid GO:0005635] [evidence TAS] [pmid 8744950]; go_function: hydroxymethylglutaryl-CoA reductase (NADPH) activity [goid GO:0004420] [evidence TAS]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence TAS] --- --- --- --- --- S0004442 // span:21-43,189-208,217-236,246-264,328-350,401-423,498-520 // numtm:7 S0004442 // HMG2 SGDID:S0004442, Chr XII from 1032623-1035760, Verified ORF // sgd // 11 // --- /// GENSCAN00000018162 // cdna:Genscan chromosome:SGD1:XII:1032623:1035760:1 // ensembl // 11 // --- /// GENEFINDER00000024761 // cdna:GeneFinder chromosome:SGD1:XII:1032623:1035760:1 // ensembl // 11 // --- /// YLR450W // cdna:known chromosome:SGD1:XII:1032623:1035760:1 gene:YLR450W // ensembl // 11 // --- --- No cerevisiae_gene -1.85090420608278 -1.40145838845291 1.05683697209707 -1.0777288470898 1.14249335698248 Max fold change below threshold 4 1.85090420608278 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773848_at YDR057W.S1 Glycoprotein of the ER membrane involved in ER-to-Golgi transport of glycosylphosphatidylinositol (GPI)-anchored proteins; mutants are defective in ER-associated glycoprotein degradation 1.85027793684562 138.679439544678 142.598037719727 YOS9 6888 // ER to Golgi transport // inferred from genetic interaction 5783 // endoplasmic reticulum // traceable author statement 8565 // protein transporter activity // inferred from direct assay 124.662292480469 105.581001281738 171.777877807617 160.533782958984 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR057W /GEN=YOS9 /DB_XREF=GI:6320262 /SEG=NC_001136:+565923,567551 /DEF=Glycoprotein of the ER membrane, involved in ER-to-Golgi transport of glycosylphosphatidylinositol (GPI)-anchored proteins /NOTE=Yos9p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS] [pmid 12077121]; go_function: protein transporter activity [goid GO:0008565] [evidence IDA] [pmid 12077121]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IGI] [pmid 12077121] --- --- --- --- --- --- S0002464 // YOS9 SGDID:S0002464, Chr IV from 565924-567552, Verified ORF // sgd // 11 // --- /// GENSCAN00000025141 // cdna:Genscan chromosome:SGD1:IV:565924:567552:1 // ensembl // 11 // --- /// GENEFINDER00000023918 // cdna:GeneFinder chromosome:SGD1:IV:566701:567552:1 // ensembl // 11 // --- /// YDR057W // cdna:known chromosome:SGD1:IV:565924:567552:1 gene:YDR057W // ensembl // 11 // --- --- No cerevisiae_gene -1.85027793684562 -1.18072656033838 1.66834531475906 1.377945763628 1.28774932471369 Max fold change below threshold 4 1.85027793684562 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779356_at YHR147C.S1 Mitochondrial ribosomal protein of the large subunit 1.85024117903017 632.650024414063 583.801239013672 MRPL6 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement /// 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // traceable author statement 568.230529785156 515.3525390625 749.947509765625 599.371948242188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR147C /GEN=MRPL6 /DB_XREF=GI:6321941 /SEG=NC_001140:-392640,393284 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl6p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0001190 // MRPL6 SGDID:S0001190, Chr VIII from 393285-392641, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016675 // cdna:Genscan chromosome:SGD1:VIII:392641:393171:-1 // ensembl // 9 // --- /// GENEFINDER00000020206 // cdna:GeneFinder chromosome:SGD1:VIII:392641:393171:-1 // ensembl // 9 // --- /// YHR147C // cdna:known chromosome:SGD1:VIII:392641:393285:-1 gene:YHR147C // ensembl // 11 // --- --- No cerevisiae_gene -1.28466634464532 -1.10260547239924 1.85024117903017 1.31979446801138 1.05480419798775 Max fold change below threshold 4 1.85024117903017 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770863_at YDR137W.S1 Subunit of a Golgi membrane exchange factor (Ric1p-Rgp1p) that catalyzes nucleotide exchange on Ypt6p 1.84976537978488 504.472412109375 940.104431152344 RGP1 6886 // intracellular protein transport // inferred from genetic interaction /// 6886 // intracellular protein transport // inferred from physical interaction 5794 // Golgi apparatus // traceable author statement 5085 // guanyl-nucleotide exchange factor activity // inferred from genetic interaction /// 5085 // guanyl-nucleotide exchange factor activity // inferred from physical interaction 893.816589355469 483.205383300781 525.739440917969 986.392272949219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR137W /GEN=RGP1 /DB_XREF=GI:6320340 /SEG=NC_001136:+728253,730244 /DEF=Ric1p-Rgp1p is an exchange factor, and peripheral membrane protein complex restricted to the Golgi. /NOTE=Rgp1p; go_component: Golgi apparatus [goid GO:0005794] [evidence TAS] [pmid 11689439]; go_function: guanyl-nucleotide exchange factor activity [goid GO:0005085] [evidence IGI,IPI] [pmid 10990452]; go_process: intracellular protein transport [goid GO:0006886] [evidence IGI,IPI] [pmid 10990452] --- --- --- --- --- --- S0002544 // RGP1 SGDID:S0002544, Chr IV from 728254-730245, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023583 // cdna:GeneFinder chromosome:SGD1:IV:728254:730245:1 // ensembl // 10 // --- /// GENSCAN00000025197 // cdna:Genscan chromosome:SGD1:IV:728254:730245:1 // ensembl // 10 // --- /// YDR137W // cdna:known chromosome:SGD1:IV:728254:730245:1 gene:YDR137W // ensembl // 10 // --- --- No cerevisiae_gene -1.44458170306525 -1.84976537978488 1.28556869021518 -1.70011324962574 1.10357346764005 Max fold change below threshold 4 1.84976537978488 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774949_at YCL044C.S1 Hypothetical protein 1.84796613513237 686.107482910156 1154.00225830078 --- --- 5739 // mitochondrion // inferred from direct assay --- 1130.30480957031 611.648010253906 760.566955566406 1177.69970703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL044C /GEN=APA1 /DB_XREF=GI:6319805 /SEG=NC_001135:-47111,48364 /DEF=Hypothetical ORF /NOTE=Ycl044cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000549 // YCL044C SGDID:S0000549, Chr III from 48364-47111, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022432 // cdna:Genscan chromosome:SGD1:III:47111:48364:-1 // ensembl // 11 // --- /// GENEFINDER00000023334 // cdna:GeneFinder chromosome:SGD1:III:47111:48364:-1 // ensembl // 11 // --- /// YCL044C // cdna:known chromosome:SGD1:III:47111:48364:-1 gene:YCL044C // ensembl // 11 // --- --- No cerevisiae_gene -1.82743177393541 -1.84796613513237 -1.38754283596671 -1.48613452280287 1.04193107651993 Max fold change below threshold 4 1.84796613513237 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780177_at YOL030W.S1 Putative 1,3-beta-glucanosyltransferase, has similarity to Gas1p; localizes to the cell wall 1.84748615169277 1294.77813720703 1963.69757080078 GAS5 --- 9277 // cell wall (sensu Fungi) // inferred from direct assay 42124 // 1,3-beta-glucanosyltransferase activity // inferred from sequence similarity 1990.50598144531 1077.41320800781 1512.14306640625 1936.88916015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL030W /GEN=GAS5 /DB_XREF=GI:6324543 /SEG=NC_001147:+268187,269641 /DEF=Protein of unknown function, localizes to the cell wall /NOTE=Gas5p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005390 // GAS5 SGDID:S0005390, Chr XV from 268187-269641, Verified ORF // sgd // 11 // --- /// GENSCAN00000017443 // cdna:Genscan chromosome:SGD1:XV:268187:269641:1 // ensembl // 11 // --- /// GENEFINDER00000022867 // cdna:GeneFinder chromosome:SGD1:XV:268187:269641:1 // ensembl // 11 // --- /// YOL030W // cdna:known chromosome:SGD1:XV:268187:269641:1 gene:YOL030W // ensembl // 11 // --- --- No cerevisiae_gene -1.67009023955007 -1.84748615169277 -1.49327590964166 -1.31634765629415 -1.02768192542558 Max fold change below threshold 4 1.84748615169277 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777646_at YLL005C.S1 Meiosis-specific protein of unknown function, required for spore wall formation during sporulation; dispensable for both nuclear divisions during meiosis 1.84738821793582 223.496673583984 184.368309020996 SPO75 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype --- --- 170.266540527344 221.879455566406 225.113891601563 198.470077514648 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL005C /GEN=SPO75 /DB_XREF=GI:6323024 /SEG=NC_001144:-137939,140545 /DEF=Meiosis-specific protein of unknown function, required for spore wall formation during sporulation; dispensible for both nuclear divisions during meiosis /NOTE=Spo75p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 11470404] --- --- --- --- --- S0003928 // span:34-56,128-150,188-207,479-501,528-547,568-590,612-634,661-683,687-709,729-751,756-775 // numtm:11 S0003928 // SPO75 SGDID:S0003928, Chr XII from 140545-137939, reverse complement, Verified ORF // sgd // 11 // --- /// YLL005C // cdna:known chromosome:SGD1:XII:137939:140545:-1 gene:YLL005C // ensembl // 11 // --- --- No cerevisiae_gene -1.32308704358392 1.3031301092934 1.84738821793582 1.32212641957925 1.16564344879478 Max fold change below threshold 4 1.84738821793582 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775302_at YOR373W.S1 Component of the spindle pole body outer plaque, required for exit from mitosis 1.84714341138091 60.2490234375 101.812595367432 NUD1 7020 // microtubule nucleation // inferred from physical interaction 5816 // spindle pole body // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from physical interaction 93.2261123657227 52.8781967163086 67.6198501586914 110.399078369141 0.0461426004767418 0.149657994508743 0.129638999700546 0.0107421996071935 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR373W /GEN=NUD1 /DB_XREF=GI:6324949 /SEG=NC_001147:+1036830,1039385 /DEF=Component of the spindle pole body outer plaque, required for exit from mitosis /NOTE=Nud1p; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 9585415]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9585415]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752] --- --- --- --- --- --- S0005900 // NUD1 SGDID:S0005900, Chr XV from 1036830-1039385, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022838 // cdna:GeneFinder chromosome:SGD1:XV:1036830:1039385:1 // ensembl // 11 // --- /// GENSCAN00000017820 // cdna:Genscan chromosome:SGD1:XV:1037841:1039385:1 // ensembl // 11 // --- /// YOR373W // cdna:known chromosome:SGD1:XV:1036830:1039385:1 gene:YOR373W // ensembl // 11 // --- --- No cerevisiae_gene 1.18294983858775 -1.76303501546924 -1.84714341138091 -1.37867966502348 1.1842076813849 Max fold change below threshold 4 1.84714341138091 Max fold change below threshold PPAAAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1777724_at YLR278C.S1 Protein of unknown function, localizes to the nucleus; potential Cdc28p substrate 1.84706869616446 211.98991394043 275.896514892578 --- --- 5634 // nucleus // inferred from direct assay --- 274.796112060547 148.774169921875 275.205657958984 276.996917724609 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR278C /GEN=YSH1 /DB_XREF=GI:6323308 /SEG=NC_001144:-700001,704026 /DEF=Protein of unknown function, localizes to the nucleus; potential Cdc28p substrate /NOTE=Ylr278cp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004268 // YLR278C SGDID:S0004268, Chr XII from 704026-700001, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000024825 // cdna:GeneFinder chromosome:SGD1:XII:699916:704959:-1 // ensembl // 11 // --- /// GENSCAN00000018037 // cdna:Genscan chromosome:SGD1:XII:700001:704026:-1 // ensembl // 11 // --- /// YLR278C // cdna:known chromosome:SGD1:XII:700001:704026:-1 gene:YLR278C // ensembl // 11 // --- --- No cerevisiae_gene 1.19208399693532 -1.84706869616446 1.07456800302159 1.0014903627834 1.00800886754751 Max fold change below threshold 4 1.84706869616446 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770072_at YMR008C.S1 Phospholipase B (lysophospholipase) involved in lipid metabolism, required for deacylation of phosphatidylcholine and phosphatidylethanolamine but not phosphatidylinositol 1.84652947703528 4748.0322265625 2616.5107421875 PLB1 6650 // glycerophospholipid metabolism // inferred from mutant phenotype 9277 // cell wall (sensu Fungi) // inferred from direct assay 4622 // lysophospholipase activity // inferred from sequence similarity /// 4622 // lysophospholipase activity // inferred from mutant phenotype 2839.87377929688 5243.91064453125 4252.15380859375 2393.14770507813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR008C /GEN=PLB1 /DB_XREF=GI:6323650 /SEG=NC_001145:-280590,282584 /DEF=Responsible for the production of the deacylation products of phosphatidylcholine and phosphatidylethanolamine but not phosphatidylinositol /NOTE=Plb1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: lysophospholipase activity [goid GO:0004622] [evidence IMP,ISS] [pmid 8051052]; go_process: glycerophospholipid metabolism [goid GO:0006650] [evidence IMP] [pmid 8051052] --- --- --- --- --- --- S0004610 // PLB1 SGDID:S0004610, Chr XIII from 282584-280590, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018723 // cdna:Genscan chromosome:SGD1:XIII:280590:282584:-1 // ensembl // 11 // --- /// GENEFINDER00000021903 // cdna:GeneFinder chromosome:SGD1:XIII:280590:282584:-1 // ensembl // 11 // --- /// YMR008C // cdna:known chromosome:SGD1:XIII:280590:282584:-1 gene:YMR008C // ensembl // 11 // --- --- No cerevisiae_gene -1.2939681719678 1.84652947703528 -1.27764425189184 1.49730380258187 -1.18666882669667 Max fold change below threshold 4 1.84652947703528 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776597_at YCR008W.S1 Ser/Thr protein kinase involved in salt tolerance; funtions in regulation of Trk1p-Trk2p potassium transporter; partially redundant with Hal5p; has similarity to Npr1p 1.84646692073654 1431.33245849609 865.569793701172 SAT4 82 // G1/S transition of mitotic cell cycle // inferred from genetic interaction /// 30003 // cation homeostasis // inferred from genetic interaction /// 30003 // cation homeostasis // inferred from mutant phenotype --- 4672 // protein kinase activity // inferred from sequence similarity 825.285461425781 1338.80261230469 1523.8623046875 905.854125976563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR008W /GEN=SAT4 /DB_XREF=GI:6319853 /SEG=NC_001135:+128467,130278 /DEF=Protein with similarity to Npr1p protein kinase /NOTE=Sat4p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 10207057]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IGI] [pmid 12518319]; go_process: cation homeostasis [goid GO:0030003] [evidence IGI,IMP] [pmid 10207057] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-56 /// hanks // 2.2.12 // CaMK Group; CaMK II KIN1/SNF1/Nim1; YCL24 // 2.0E-64 --- --- S0000601 // SAT4 SGDID:S0000601, Chr III from 128467-130278, Verified ORF // sgd // 10 // --- /// GENSCAN00000022466 // cdna:Genscan chromosome:SGD1:III:128476:130278:1 // ensembl // 10 // --- /// GENEFINDER00000023299 // cdna:GeneFinder chromosome:SGD1:III:129124:130278:1 // ensembl // 10 // --- /// YCR008W // cdna:known chromosome:SGD1:III:128467:130278:1 gene:YCR008W // ensembl // 10 // --- --- No cerevisiae_gene 1.55441095673202 1.62222973126383 1.27402679455802 1.84646692073654 1.09762520766038 Max fold change below threshold 4 1.84646692073654 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775605_at YGR169C.S1 Pseudouridine synthase responsible for modification of cytoplasmic and mitochondrial tRNAs at position 31; mutation of Asp168 to Ala abolishes enzyme activity; not essential for viability 1.84596309204766 144.511940002441 261.553443908691 PUS6 1522 // pseudouridine synthesis // inferred from direct assay /// 6400 // tRNA modification // inferred from direct assay 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4730 // pseudouridylate synthase activity // inferred from direct assay 241.33674621582 130.737579345703 158.28630065918 281.770141601563 0.000732421991415322 0.00195312988944352 0.00292969006113708 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR169C /GEN=PUS6 /DB_XREF=GI:6321608 /SEG=NC_001139:-834692,835906 /DEF=RNA:Psi-synthase /NOTE=Pus6p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11406626]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11406626]; go_function: pseudouridylate synthase activity [goid GO:0004730] [evidence IDA] [pmid 11406626]; go_process: pseudouridine synthesis [goid GO:0001522] [evidence IDA] [pmid 11406626]; go_process: tRNA modification [goid GO:0006400] [evidence IDA] [pmid 11406626] --- --- --- --- --- --- S0003401 // PUS6 SGDID:S0003401, Chr VII from 835908-834694, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019473 // cdna:Genscan chromosome:SGD1:VII:834694:835908:-1 // ensembl // 11 // --- /// GENEFINDER00000021478 // cdna:GeneFinder chromosome:SGD1:VII:834694:835908:-1 // ensembl // 11 // --- /// YGR169C // cdna:known chromosome:SGD1:VII:834694:835908:-1 gene:YGR169C // ensembl // 11 // --- --- No cerevisiae_gene 1.43704273675579 -1.84596309204766 -1.04822433243838 -1.52468498670308 1.16753932428336 Max fold change below threshold 4 1.84596309204766 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779615_at YBR092C.S1 Constitutively expressed acid phosphatase similar to Pho5p; brought to the cell surface by transport vesicles; hydrolyzes thiamin phosphates in the periplasmic space, increasing cellular thiamin uptake; expression is repressed by thiamin 1.84568791039172 65.5774269104004 127.576068878174 PHO3 6796 // phosphate metabolism // inferred from direct assay /// 6796 // phosphate metabolism // traceable author statement /// 42723 // thiamin and derivative metabolism // inferred from direct assay 30287 // periplasmic space (sensu Fungi) // inferred from mutant phenotype /// 30287 // periplasmic space (sensu Fungi) // non-traceable author statement 3993 // acid phosphatase activity // inferred from mutant phenotype 108.452583312988 72.3948745727539 58.7599792480469 146.699554443359 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR092C /GEN=PHO3 /DB_XREF=GI:6319568 /SEG=NC_001134:-427655,429058 /DEF=Acid phosphatase, nearly identical to Pho5p; glycosylated; transported to cell surface by secretory pathway; expression is repressed by thiamine /NOTE=Pho3p; go_component: periplasmic space (sensu Fungi) [goid GO:0030287] [evidence NAS] [pmid 1965216]; go_component: periplasmic space (sensu Fungi) [goid GO:0030287] [evidence IMP] [pmid 2676709]; go_function: acid phosphatase activity [goid GO:0003993] [evidence IMP] [pmid 2676709]; go_process: thiamin transport [goid GO:0015888] [evidence IMP] [pmid 2676709] --- --- --- --- --- --- S0000296 // PHO3 SGDID:S0000296, Chr II from 429095-427692, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021213 // cdna:Genscan chromosome:SGD1:II:427692:429095:-1 // ensembl // 11 // --- /// GENEFINDER00000022169 // cdna:GeneFinder chromosome:SGD1:II:427692:429095:-1 // ensembl // 11 // --- /// YBR092C // cdna:known chromosome:SGD1:II:427692:429095:-1 gene:YBR092C // ensembl // 11 // --- --- No cerevisiae_gene 1.4923692747225 -1.49806991106805 1.48477537648881 -1.84568791039172 1.35266076622622 Max fold change below threshold 4 1.84568791039172 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773123_at YBR243C.S1 UDP-N-acetyl-glucosamine-1-P transferase, transfers Glc-Nac-P from UDP-GlcNac to Dol-P in the ER in the first step of the dolichol pathway of protein asparagine-linked glycosylation; inhibited by tunicamycin 1.84559976767032 309.492874145508 448.168334960938 ALG7 6487 // N-linked glycosylation // traceable author statement 5783 // endoplasmic reticulum // inferred from curator 3975 // UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity // traceable author statement 411.823028564453 260.710083007813 358.275665283203 484.513641357422 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR243C /GEN=ALG7 /DB_XREF=GI:6319720 /SEG=NC_001134:-705404,706750 /DEF=UDP-N-acetyl-glucosamine-1-P transferase, transfers Glc-Nac-P from UDP-GlcNac to Dol-P in the ER in the first step of the dolichol pathway of protein asparagine-linked glycosylation; inhibited by tunicamycin /NOTE=Alg7p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IC] [pmid 9878760]; go_function: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity [goid GO:0003975] [evidence TAS] [pmid 3031666]; go_process: N-linked glycosylation [goid GO:0006487] [evidence TAS] [pmid 9878760] --- --- --- --- --- S0000447 // span:21-43,71-93,161-183,198-220,225-247,257-274,281-303 // numtm:7 S0000447 // ALG7 SGDID:S0000447, Chr II from 706788-705442, reverse complement, Verified ORF // sgd // 11 // --- /// YBR243C // cdna:known chromosome:SGD1:II:705442:706788:-1 gene:YBR243C // ensembl // 11 // --- --- No cerevisiae_gene 1.84559976767032 -1.57962064149284 1.16424808499567 -1.14945855515731 1.17650934442971 Max fold change below threshold 4 1.84559976767032 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773300_at YEL026W.S1 RNA binding protein, part of U3 snoRNP involved in rRNA processing, part of U4/U6-U5 tri-snRNP involved in mRNA splicing, similar to human 15.5K protein 1.84537509400753 2064.85345458984 3145.91662597656 SNU13 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction /// 398 // nuclear mRNA splicing, via spliceosome // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from physical interaction /// 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype 5730 // nucleolus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 3723 // RNA binding // inferred from mutant phenotype /// 3723 // RNA binding // inferred from sequence similarity 3324.4970703125 2328.177734375 1801.52917480469 2967.33618164063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL026W /GEN=SNU13 /DB_XREF=GI:6320809 /SEG=NC_001137:+101943,102323 /DEF=part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA); RNA binding protein (putative), similar to Nhp2p /NOTE=Snu13p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 10684247]; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence IDA] [pmid 10377396]; go_component: small nucleolar ribonucleoprotein complex [goid GO:0005732] [evidence IPI] [pmid 12068309]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10377396]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IPI] [pmid 12068309] --- --- --- --- --- --- S0000752 // SNU13 SGDID:S0000752, Chr V from 101943-102323, Verified ORF // sgd // 11 // --- /// GENSCAN00000016781 // cdna:Genscan chromosome:SGD1:V:101943:102323:1 // ensembl // 11 // --- /// GENEFINDER00000019641 // cdna:GeneFinder chromosome:SGD1:V:101943:102323:1 // ensembl // 11 // --- /// YEL026W // cdna:known chromosome:SGD1:V:101943:102323:1 gene:YEL026W // ensembl // 11 // --- --- No cerevisiae_gene 1.32315346688071 -1.42793955170479 -1.78793018386264 -1.84537509400753 -1.12036414710328 Max fold change below threshold 4 1.84537509400753 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771446_at YDL076C.S1 Protein of unknown function, may be involved in chromatin silencing 1.84521495749566 436.482727050781 770.880035400391 RXT3 6342 // chromatin silencing // RCA 5634 // nucleus // inferred from direct assay 4407 // histone deacetylase activity // RCA 747.190368652344 404.934051513672 468.031402587891 794.569702148438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL076C /GEN=RXT3 /DB_XREF=GI:6320127 /SEG=NC_001136:-320668,321552 /DEF=Hypothetical ORF /NOTE=Rxt3p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: histone deacetylase activity [goid GO:0004407] [evidence TAS] [pmid 14566057]; go_process: chromatin silencing [goid GO:0006342] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0002234 // RXT3 SGDID:S0002234, Chr IV from 321552-320668, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023742 // cdna:GeneFinder chromosome:SGD1:IV:320668:321552:-1 // ensembl // 11 // --- /// GENSCAN00000025045 // cdna:Genscan chromosome:SGD1:IV:320668:321552:-1 // ensembl // 11 // --- /// YDL076C // cdna:known chromosome:SGD1:IV:320668:321552:-1 gene:YDL076C // ensembl // 11 // --- --- No cerevisiae_gene 1.39536759084549 -1.84521495749566 1.10034106447109 -1.59645349547252 1.06340998958746 Max fold change below threshold 4 1.84521495749566 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769455_at YLR286C.S1 Endochitinase, required for cell separation after mitosis; transcriptional activation during late G and early M cell cycle phases is mediated by transcription factor Ace2p 1.84461658610807 761.861785888672 603.914276123047 CTS1 6032 // chitin catabolism // inferred from curator /// 7109 // cytokinesis, completion of separation // inferred from mutant phenotype 5576 // extracellular region // inferred from direct assay /// 5635 // nuclear membrane // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // traceable author statement 8843 // endochitinase activity // inferred from direct assay 580.207763671875 656.789184570313 866.934387207031 627.620788574219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR286C /GEN=CTS1 /DB_XREF=GI:6323316 /SEG=NC_001144:-708450,710138 /DEF=Endochitinase, required for cell separation after mitosis; transcriptional activation during late G and early M cell cycle phases is mediated by transcription factor Ace2p /NOTE=Cts1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence TAS] [pmid 9748433]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11914276]; go_component: extracellular [goid GO:0005576] [evidence IDA] [pmid 1918080]; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 11914276]; go_function: chitinase activity [goid GO:0004568] [evidence IDA] [pmid 1918080]; go_process: cytokinesis, completion of separation [goid GO:0007109] [evidence IMP] [pmid 1918080] --- --- --- --- --- --- S0004276 // CTS1 SGDID:S0004276, Chr XII from 710138-708450, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018042 // cdna:Genscan chromosome:SGD1:XII:708450:710138:-1 // ensembl // 11 // --- /// GENEFINDER00000024671 // cdna:GeneFinder chromosome:SGD1:XII:708450:710138:-1 // ensembl // 11 // --- /// YLR286C // cdna:known chromosome:SGD1:XII:708450:710138:-1 gene:YLR286C // ensembl // 11 // --- YLR286W-A // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene 1.84461658610807 1.13198965214424 -1.0015924543331 1.49417922593898 1.08171732243341 Max fold change below threshold 4 1.84461658610807 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776646_at YER076C.S1 Hypothetical protein 1.84440775675605 83.6492118835449 125.399044036865 --- --- 5624 // membrane fraction // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 123.372871398926 73.1021194458008 94.1963043212891 127.425216674805 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER076C /GEN=PTP3 /DB_XREF=GI:6320920 /SEG=NC_001137:-312586,313494 /DEF=Hypothetical ORF /NOTE=Yer076cp; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 11935221]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000878 // YER076C SGDID:S0000878, Chr V from 313494-312586, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016866 // cdna:Genscan chromosome:SGD1:V:312586:313494:-1 // ensembl // 11 // --- /// GENEFINDER00000019657 // cdna:GeneFinder chromosome:SGD1:V:312586:313494:-1 // ensembl // 11 // --- /// YER076C // cdna:known chromosome:SGD1:V:312586:313494:-1 gene:YER076C // ensembl // 11 // --- --- No cerevisiae_gene -1.38599069139647 -1.68767844672953 1.84440775675605 -1.30974216332437 1.03284632374954 Max fold change below threshold 4 1.84440775675605 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770858_at YFR033C.S1 Subunit 6 of the ubiquinol cytochrome-c reductase complex, which is a component of the mitochondrial inner membrane electron transport chain; highly acidic protein; required for maturation of cytochrome c1 1.84426785013058 5777.50634765625 3440.72985839844 QCR6 6122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5750 // respiratory chain complex III (sensu Eukaryota) // inferred from direct assay 8121 // ubiquinol-cytochrome-c reductase activity // inferred from mutant phenotype 3628.3408203125 6691.63232421875 4863.38037109375 3253.11889648438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR033C /GEN=QCR6 /DB_XREF=GI:14318558 /SEG=NC_001138:-224314,224757 /DEF=ubiquinol-cytochrome c oxidoreductase subunit 6 (17 kDa) /NOTE=Qcr6p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11914276]; go_component: respiratory chain complex III (sensu Eukarya) [goid GO:0005750] [evidence IDA] [pmid 10873857]; go_function: ubiquinol-cytochrome-c reductase activity [goid GO:0008121] [evidence IMP] [pmid 8288589]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 8288589]; go_process: mitochondrial electron transport, ubiquinol to cytochrome c [goid GO:0006122] [evidence IMP] [pmid 8288589] --- --- --- --- --- --- S0001929 // QCR6 SGDID:S0001929, Chr VI from 224757-224314, reverse complement, Verified ORF // sgd // 11 // --- /// YFR033C // cdna:known chromosome:SGD1:VI:224314:224757:-1 gene:YFR033C // ensembl // 11 // --- GENEFINDER00000018508 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 1.0167830240503 1.84426785013058 -1.18343854736081 1.34038686329221 -1.11534221028122 Max fold change below threshold 4 1.84426785013058 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779200_at YBL061C.S1 Activator of Chs3p (chitin synthase III), recruits Chs3p to the bud neck via interaction with Bni4p; has similarity to Shc1p, which activates Chs3p during sporulation 1.84407849355659 182.625457763672 329.772491455078 SKT5 910 // cytokinesis // inferred from mutant phenotype /// 6038 // cell wall chitin biosynthesis // inferred from mutant phenotype /// 6970 // response to osmotic stress // inferred from mutant phenotype 131 // incipient bud site // inferred from direct assay /// 144 // septin ring (sensu Saccharomyces) // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 8047 // enzyme activator activity // inferred from mutant phenotype 320.832824707031 173.980026245117 191.270889282227 338.712158203125 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL061C /GEN=SKT5 /DB_XREF=GI:6319410 /SEG=NC_001134:-105280,107370 /DEF=Activator of Chs3p (chitin synthase III), recruits Chs3p to the bud neck via interaction with Bni4p; has similarity to Shc1p, which activates Chs3p during sporulation /NOTE=Skt5p; go_component: contractile ring (sensu Saccharomyces) [goid GO:0000142] [evidence IDA] [pmid 10652251]; go_function: enzyme activator activity [goid GO:0008047] [evidence IMP] [pmid 9234668]; go_process: cell wall chitin biosynthesis [goid GO:0006038] [evidence IMP] [pmid 9234668]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251]; go_process: response to osmotic stress [goid GO:0006970] [evidence IMP] [pmid 10652251] --- --- --- --- scop // a.139.1.Type I dockerin domain // All alpha proteins; Type I dockerin domain; Type I dockerin domain; Type I dockerin domain // 6.69999980926514 /// scop // a.139.1.Type I dockerin domain // All alpha proteins; Type I dockerin domain; Type I dockerin domain; Type I dockerin domain // 1.70000004768372 --- S0000157 // SKT5 SGDID:S0000157, Chr II from 107408-105318, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021090 // cdna:Genscan chromosome:SGD1:II:105318:107408:-1 // ensembl // 11 // --- /// GENEFINDER00000022150 // cdna:GeneFinder chromosome:SGD1:II:105318:107408:-1 // ensembl // 11 // --- /// YBL061C // cdna:known chromosome:SGD1:II:105318:107408:-1 gene:YBL061C // ensembl // 11 // --- YBL062W // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene -1.67170284696971 -1.84407849355659 -1.09636025352676 -1.67737404218178 1.05572788106211 Max fold change below threshold 4 1.84407849355659 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775872_at YER047C.S1 Putative ATPase of the AAA family, interacts with the Sin1p transcriptional repressor in the two-hybrid system 1.8437610725541 160.093803405762 202.706825256348 SAP1 --- 5737 // cytoplasm // inferred from direct assay 16887 // ATPase activity // inferred from sequence similarity 208.778076171875 138.446350097656 181.741256713867 196.63557434082 0.00195312988944352 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER047C /GEN=SAP1 /DB_XREF=GI:6320887 /SEG=NC_001137:-243809,246502 /DEF=Putative ATPase of the AAA family, interacts with the Sin1p transcriptional repressor in the two-hybrid system /NOTE=Sap1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: ATPase activity [goid GO:0016887] [evidence ISS] [pmid 8654588]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000849 // SAP1 SGDID:S0000849, Chr V from 246502-243809, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000016842 // cdna:Genscan chromosome:SGD1:V:243809:246502:-1 // ensembl // 10 // --- /// GENEFINDER00000019697 // cdna:GeneFinder chromosome:SGD1:V:243809:246502:-1 // ensembl // 10 // --- /// YER047C // cdna:known chromosome:SGD1:V:243809:246502:-1 gene:YER047C // ensembl // 10 // --- YER046W-A // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene -1.60278665645505 -1.50800708017661 1.8437610725541 -1.14876544790584 -1.06175129740262 Max fold change below threshold 4 1.8437610725541 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769669_at SPBC18H10.14.S1 --- 1.8436821400539 --- --- --- --- 16.545352935791 14.6793041229248 16.9652118682861 21.3157005310059 0.398925989866257 0.129638999700546 0.219482004642487 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18H10.14 /GEN=rps1601 /DEF=40S ribosomal protein S16 --- --- --- --- --- --- AB017604 // Schizosaccharomyces pombe mRNA for ribosomal protein S16 homolog, partial cds. // gb // 11 // --- /// SPBC18H10.14 // |rps1601|rps16-1|40S ribosomal protein S16|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.8436821400539 -1.12712106767731 -1.81781033039524 1.02537624516833 1.28831948243882 Max fold change below threshold 4 1.8436821400539 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774117_at YOL092W.S1 Hypothetical protein 1.8431388918312 713.415222167969 1224.943359375 --- --- 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1183.13024902344 641.910522460938 784.919921875 1266.75646972656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL092W /GEN=TRM10 /DB_XREF=GI:6324480 /SEG=NC_001147:+144203,145129 /DEF=Hypothetical ORF /NOTE=Yol092wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005452 // span:15-37,44-66,71-93,168-186,206-225,245-267,277-299 // numtm:7 S0005452 // YOL092W SGDID:S0005452, Chr XV from 144203-145129, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022829 // cdna:GeneFinder chromosome:SGD1:XV:144386:145129:1 // ensembl // 11 // --- /// YOL092W // cdna:known chromosome:SGD1:XV:144203:145129:1 gene:YOL092W // ensembl // 11 // --- --- No cerevisiae_gene 1.46596681889556 -1.8431388918312 1.07015752765393 -1.50732605460848 1.07068217617811 Max fold change below threshold 4 1.8431388918312 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771015_at YPR179C.S1 Subunit of a possibly tetrameric trichostatin A-sensitive class II histone deacetylase complex that contains an Hda1p homodimer and an Hda2p-Hda3p heterodimer; required for the activity of the complex; has similarity to Hda2p 1.84275343886907 105.545616149902 107.904964447021 HDA3 6355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 16575 // histone deacetylation // inferred from direct assay 118 // histone deacetylase complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay 4407 // histone deacetylase activity // inferred from mutant phenotype /// 4407 // histone deacetylase activity // inferred from direct assay 75.9158096313477 103.487754821777 107.603477478027 139.894119262695 0.00195312988944352 0.000244141003349796 0.000732421991415322 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR179C /GEN=HDA3 /DB_XREF=GI:6325437 /SEG=NC_001148:-893791,895758 /DEF=Subunit of a possibly tetrameric trichostatin A-sensitive class II histone deacetylase complex that contains an Hda1p homodimer and an Hda2p-Hda3p heterodimer; required for the activity of the complex; has similarity to Hda2p /NOTE=Hda3p; go_component: histone deacetylase complex [goid GO:0000118] [evidence IPI] [pmid 11287668]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: histone deacetylase activity [goid GO:0004407] [evidence IMP] [pmid 11287668]; go_function: histone deacetylase activity [goid GO:0004407] [evidence IDA] [pmid 8663039]; go_process: histone deacetylation [goid GO:0016575] [evidence IDA] [pmid 11287668]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence IDA] [pmid 11287668] --- --- --- --- --- --- S0006383 // HDA3 SGDID:S0006383, Chr XVI from 895760-893793, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017322 // cdna:Genscan chromosome:SGD1:XVI:893793:895760:-1 // ensembl // 11 // --- /// GENEFINDER00000021014 // cdna:GeneFinder chromosome:SGD1:XVI:893793:895760:-1 // ensembl // 11 // --- /// YPR179C // cdna:known chromosome:SGD1:XVI:893793:895760:-1 gene:YPR179C // ensembl // 11 // --- --- No cerevisiae_gene -1.26444029054164 1.36319108396948 1.52965553171182 1.4174053863162 1.84275343886907 Max fold change below threshold 4 1.84275343886907 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775778_at YDL147W.S1 Essential, non-ATPase regulatory subunit of the 26S proteasome lid, similar to mammalian p55 subunit and to another S. cerevisiae regulatory subunit, Rpn7p 1.84255953940792 4108.42492675781 2438.48461914063 RPN5 6511 // ubiquitin-dependent protein catabolism // traceable author statement 8541 // proteasome regulatory particle, lid subcomplex (sensu Eukaryota) // inferred from direct assay /// 8541 // proteasome regulatory particle, lid subcomplex (sensu Eukaryota) // inferred from physical interaction --- 2515.4443359375 4634.85595703125 3581.99389648438 2361.52490234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL147W /GEN=RPN5 /DB_XREF=GI:6320054 /SEG=NC_001136:+190925,192262 /DEF=Regulatory Particle Non-ATPase, homolog of mammalian proteasomal subunit p55 /NOTE=Rpn5p; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence TAS] [pmid 9697412]; go_component: proteasome regulatory particle, lid subcomplex (sensu Eukarya) [goid GO:0008541] [evidence IDA] [pmid 11742986]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 9697412]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 9697412] --- --- --- --- --- --- S0002306 // RPN5 SGDID:S0002306, Chr IV from 190925-192262, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023910 // cdna:GeneFinder chromosome:SGD1:IV:190925:192262:1 // ensembl // 11 // --- /// YDL147W // cdna:known chromosome:SGD1:IV:190925:192262:1 gene:YDL147W // ensembl // 11 // --- --- No cerevisiae_gene -1.19695785439189 1.84255953940792 -1.03514397411311 1.4240004619897 -1.06517798454761 Max fold change below threshold 4 1.84255953940792 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770056_at YOL145C.S1 Component of the Paf1p complex, which is a large complex that binds to and modulates the activity of RNA polymerase II and is required for expression of a subset of genes, including cyclin genes; contains TPR repeats 1.84246750740036 245.415451049805 327.815307617188 CTR9 6366 // transcription from RNA polymerase II promoter // inferred from physical interaction /// 6368 // RNA elongation from RNA polymerase II promoter // inferred from physical interaction /// 7059 // chromosome segregation // inferred from mutant phenotype /// 16571 // histone methylation // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 8023 // transcription elongation factor complex // inferred from physical interaction /// 16593 // Cdc73/Paf1 complex // inferred from physical interaction /// 16593 // Cdc73/Paf1 complex // traceable author statement 16944 // RNA polymerase II transcription elongation factor activity // inferred from physical interaction /// 45142 // triplex DNA binding // inferred from direct assay 308.496185302734 259.239898681641 231.591003417969 347.134429931641 0.00195312988944352 0.00292969006113708 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL145C /GEN=CTR9 /DB_XREF=GI:6324427 /SEG=NC_001147:-49553,52786 /DEF=Component of the Paf1p complex, which is a large complex that binds to and modulates the activity of RNA polymerase II and is required for expression of a subset of genes, including cyclin genes; contains TPR repeats /NOTE=Ctr9p; go_component: Cdc73/Paf1 complex [goid GO:0016593] [evidence IPI] [pmid 11884586]; go_component: Cdc73/Paf1 complex [goid GO:0016593] [evidence TAS] [pmid 12773564]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10684247]; go_component: transcription elongation factor complex [goid GO:0008023] [evidence IPI] [pmid 12242279]; go_function: Pol II transcription elongation factor activity [goid GO:0016944] [evidence IPI] [pmid 12242279]; go_function: triplex DNA binding [goid GO:0045142] [evidence IDA] [pmid 11058104]; go_process: RNA elongation from Pol II promoter [goid GO:0006368] [evidence IPI] [pmid 12242279]; go_process: chromosome segregation [goid GO:0007059] [evidence IMP] [pmid 11058104]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IPI] [pmid 11884586] --- --- --- --- --- --- S0005505 // CTR9 SGDID:S0005505, Chr XV from 52786-49553, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017354 // cdna:Genscan chromosome:SGD1:XV:49553:52774:-1 // ensembl // 10 // --- /// GENEFINDER00000022923 // cdna:GeneFinder chromosome:SGD1:XV:49553:52786:-1 // ensembl // 10 // --- /// YOL145C // cdna:known chromosome:SGD1:XV:49553:52786:-1 gene:YOL145C // ensembl // 10 // --- --- No cerevisiae_gene -1.84246750740036 -1.19000272285086 1.12335970935431 -1.33207327033326 1.12524707425795 Max fold change below threshold 4 1.84246750740036 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769751_at YOR285W.S1 Hypothetical protein 1.84175579442991 4851.07177734375 3004.96850585938 --- --- 5739 // mitochondrion // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay --- 3245.31469726563 5977.0771484375 3725.06640625 2764.62231445313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR285W /GEN=HUA2 /DB_XREF=GI:6324859 /SEG=NC_001147:+849632,850051 /DEF=Hypothetical ORF /NOTE=Yor285wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005811 // YOR285W SGDID:S0005811, Chr XV from 849632-850051, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022875 // cdna:GeneFinder chromosome:SGD1:XV:849632:850051:1 // ensembl // 11 // --- /// GENSCAN00000017727 // cdna:Genscan chromosome:SGD1:XV:849647:850051:1 // ensembl // 11 // --- /// YOR285W // cdna:known chromosome:SGD1:XV:849632:850051:1 gene:YOR285W // ensembl // 11 // --- --- No cerevisiae_gene -1.30816566714997 1.84175579442991 -1.18942093614938 1.14782902545278 -1.17387271320914 Max fold change below threshold 4 1.84175579442991 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779155_at YKR029C.S1 Defining member of the SET3 histone deacetylase complex which is a meiosis-specific repressor of sporulation genes; necessary for efficient transcription by RNAPII; one of two yeast proteins that contains both SET and PHD domains 1.8416373679492 426.440200805664 706.583923339844 SET3 16575 // histone deacetylation // inferred from direct assay /// 16575 // histone deacetylation // inferred from physical interaction /// 45835 // negative regulation of meiosis // inferred from mutant phenotype 118 // histone deacetylase complex // inferred from physical interaction 17136 // NAD-dependent histone deacetylase activity // inferred from direct assay /// 17136 // NAD-dependent histone deacetylase activity // inferred from physical interaction /// 45129 // NAD-independent histone deacetylase activity // inferred from direct assay /// 45129 // NAD-independent histone deacetylase activity // inferred from physical interaction 680.180053710938 483.545989990234 369.334411621094 732.98779296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR029C /GEN=SET3 /DB_XREF=GI:6322881 /SEG=NC_001143:-497220,499475 /DEF=Set3p /NOTE=go_component: histone deacetylase complex [goid GO:0000118] [evidence IPI] [pmid 11711434]; go_function: NAD-dependent histone deacetylase activity [goid GO:0017136] [evidence IDA,IPI] [pmid 11711434]; go_function: NAD-independent histone deacetylase activity [goid GO:0045129] [evidence IDA,IPI] [pmid 11711434]; go_process: histone deacetylation [goid GO:0016575] [evidence IDA,IPI] [pmid 11711434]; go_process: negative regulation of meiosis [goid GO:0045835] [evidence IMP] [pmid 11711434] --- --- --- --- --- --- S0001737 // SET3 SGDID:S0001737, Chr XI from 499475-497220, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018443 // cdna:Genscan chromosome:SGD1:XI:497220:499307:-1 // ensembl // 10 // --- /// YKR029C // cdna:known chromosome:SGD1:XI:497220:499475:-1 gene:YKR029C // ensembl // 10 // --- --- No cerevisiae_gene -1.55637838443659 -1.40665017969578 -1.1924889079646 -1.8416373679492 1.0776378827484 Max fold change below threshold 4 1.8416373679492 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772981_at YHR154W.S1 Protein that interacts with Mms22p and is implicated in Mms22-dependent DNA repair during S phase, damage induces phosphorylation by Mec1p at one or more SQ/TQ motifs; has four BRCT domains; has a role in regulation of Ty1 transposition 1.84130934853918 19.8330688476563 25.9371452331543 RTT107 335 // negative regulation of DNA transposition // inferred from mutant phenotype /// 6302 // double-strand break repair // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 24.2134437561035 21.6389865875244 18.0271511077881 27.6608467102051 0.00585938012227416 0.00292969006113708 0.00415039015933871 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR154W /GEN=RTT107 /DB_XREF=GI:6321948 /SEG=NC_001140:+402967,406179 /DEF=Regulator of Ty1 Transposition; Establishes Silent Chromatin /NOTE=Rtt107p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: negative regulation of DNA transposition [goid GO:0000335] [evidence IMP] [pmid 11779788] --- --- --- --- --- --- S0001197 // RTT107 SGDID:S0001197, Chr VIII from 402968-406180, Verified ORF // sgd // 11 // --- /// GENSCAN00000016681 // cdna:Genscan chromosome:SGD1:VIII:403304:406180:1 // ensembl // 11 // --- /// GENEFINDER00000020220 // cdna:GeneFinder chromosome:SGD1:VIII:403610:406180:1 // ensembl // 11 // --- /// YHR154W // cdna:known chromosome:SGD1:VIII:402968:406180:1 gene:YHR154W // ensembl // 11 // --- --- No cerevisiae_gene 1.15232199469106 -1.11897309322533 -1.84130934853918 -1.34316529613172 1.14237557403344 Max fold change below threshold 4 1.84130934853918 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1777457_s_at YCR107W.S1 Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role /// Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role 1.84111195532044 124.257030487061 146.288803100586 AAD15 /// AAD3 6081 // aldehyde metabolism // inferred from sequence similarity --- 18456 // aryl-alcohol dehydrogenase activity // inferred from sequence similarity 144.775421142578 78.6347732543945 169.879287719727 147.802185058594 0.000732421991415322 0.00195312988944352 0.00415039015933871 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR107W /GEN=AAD3 /DB_XREF=GI:6319951 /SEG=NC_001135:+313886,314977 /DEF=Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role /NOTE=Aad3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: aryl-alcohol dehydrogenase activity [goid GO:0018456] [evidence ISS] [pmid 10572264]; go_process: aldehyde metabolism [goid GO:0006081] [evidence ISS] [pmid 10572264] --- --- --- --- scop // a.2.10.Epsilon subunit of F1F0-ATP synthase C-terminal domain // All alpha proteins; Long alpha-hairpin; Epsilon subunit of F1F0-ATP synthase C-terminal domain; Epsilon subunit of F1F0-ATP synthase C-terminal domain // 0.920000016689301 /// scop // a.2.10.Epsilon subunit of F1F0-ATP synthase C-terminal domain // All alpha proteins; Long alpha-hairpin; Epsilon subunit of F1F0-ATP synthase C-terminal domain; Epsilon subunit of F1F0-ATP synthase C-terminal domain // 1.5 --- S0000704 // AAD3 SGDID:S0000704, Chr III from 313886-314977, Verified ORF // sgd // 11 // --- /// S0005525 // AAD15 SGDID:S0005525, Chr XV from 2078-1647, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022534 // cdna:Genscan chromosome:SGD1:III:313886:314977:1 // ensembl // 11 // --- /// GENEFINDER00000023332 // cdna:GeneFinder chromosome:SGD1:III:313886:314977:1 // ensembl // 11 // --- /// GENSCAN00000017340 // cdna:Genscan chromosome:SGD1:XV:1647:2060:-1 // ensembl // 11 // --- /// GENEFINDER00000022682 // cdna:GeneFinder chromosome:SGD1:XV:1647:2060:-1 // ensembl // 11 // --- /// YCR107W // cdna:known chromosome:SGD1:III:313886:314977:1 gene:YCR107W // ensembl // 11 // --- /// YOL165C // cdna:known chromosome:SGD1:XV:1647:2078:-1 gene:YOL165C // ensembl // 11 // --- --- No cerevisiae_gene 1.08602727950521 -1.84111195532044 1.49920879021737 1.17339867761411 1.02090661448006 Max fold change below threshold 4 1.84111195532044 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772642_at YLR312C.S1 Hypothetical protein 1.84060929472362 1636.92028808594 1058.13388061523 --- --- --- --- 1019.06854248047 1875.70703125 1398.13354492188 1097.19921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR312C /GEN=CDC25 /DB_XREF=GI:6323343 /SEG=NC_001144:-757639,758835 /DEF=Hypothetical ORF /NOTE=Ylr312cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004303 // YLR312C SGDID:S0004303, Chr XII from 758835-757639, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018061 // cdna:Genscan chromosome:SGD1:XII:757639:758835:-1 // ensembl // 11 // --- /// GENEFINDER00000024897 // cdna:GeneFinder chromosome:SGD1:XII:757639:758835:-1 // ensembl // 11 // --- /// YLR312C // cdna:known chromosome:SGD1:XII:757639:758835:-1 gene:YLR312C // ensembl // 11 // --- --- No cerevisiae_gene 1.0827194741579 1.84060929472362 1.13485388693228 1.37197203783638 1.07666871560902 Max fold change below threshold 4 1.84060929472362 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778996_at YER062C.S1 One of two redundant DL-glycerol-3-phosphatases (RHR2/GPP1 encodes the other) involved in glycerol biosynthesis; induced in response to hyperosmotic stress and oxidative stress, and during the diauxic transition 1.84002376845656 4204.77075195313 5468.96215820313 HOR2 5975 // carbohydrate metabolism // inferred from direct assay /// 6114 // glycerol biosynthesis // inferred from mutant phenotype /// 6970 // response to osmotic stress // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 121 // glycerol-1-phosphatase activity // inferred from mutant phenotype /// 121 // glycerol-1-phosphatase activity // inferred from direct assay 6076.73779296875 4228.98583984375 4180.5556640625 4861.1865234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER062C /GEN=HOR2 /DB_XREF=GI:6320905 /SEG=NC_001137:-279928,280680 /DEF=One of two redundant DL-glycerol-3-phosphatases (RHR2/GPP1 encodes the other) involved in glycerol biosynthesis; induced in response to hyperosmotic stress and oxidative stress, and during the diauxic transition /NOTE=Hor2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: glycerol-1-phosphatase activity [goid GO:0000121] [evidence IDA,IMP] [pmid 8662716]; go_process: carbohydrate metabolism [goid GO:0005975] [evidence IDA] [pmid 8662716]; go_process: glycerol biosynthesis [goid GO:0006114] [evidence IMP] [pmid 11058591]; go_process: response to osmotic stress [goid GO:0006970] [evidence IDA] [pmid 8662716] --- --- --- --- --- --- S0000864 // HOR2 SGDID:S0000864, Chr V from 280680-279928, reverse complement, Verified ORF // sgd // 10 // --- /// D50469 // Yeast Hor2 mRNA, complete cds. // gb // 10 // --- /// GENSCAN00000016856 // cdna:Genscan chromosome:SGD1:V:279928:280680:-1 // ensembl // 10 // --- /// GENEFINDER00000019705 // cdna:GeneFinder chromosome:SGD1:V:279928:280680:-1 // ensembl // 10 // --- /// YER062C // cdna:known chromosome:SGD1:V:279928:280680:-1 gene:YER062C // ensembl // 10 // --- --- No cerevisiae_gene 1.0720899588346 -1.43692554742469 -1.84002376845656 -1.45357179314857 -1.25005238199988 Max fold change below threshold 4 1.84002376845656 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778726_at YGR181W.S1 Translocase of the inner membrane; mitochondrial intermembrane space protein mediating import and insertion of polytopic inner membrane proteins; Subunit of mitochondrial protein import machinery 1.83905209274355 1088.55068969727 1682.73596191406 TIM13 45039 // mitochondrial inner membrane protein import // inferred from physical interaction /// 45039 // mitochondrial inner membrane protein import // inferred from mutant phenotype 5758 // mitochondrial intermembrane space // inferred from direct assay /// 42719 // mitochondrial intermembrane space protein transporter complex // inferred from direct assay 8565 // protein transporter activity // inferred from physical interaction /// 8565 // protein transporter activity // inferred from mutant phenotype 1685.47766113281 916.492614746094 1260.60876464844 1679.99426269531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR181W /GEN=TIM13 /DB_XREF=GI:6321620 /SEG=NC_001139:+858290,858607 /DEF=Translocase of the inner membrane; mitochondrial intermembrane space protein mediating import and insertion of polytopic inner membrane proteins /NOTE=Tim13p; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence IDA] [pmid 10397776]; go_component: mitochondrial intermembrane space protein transporter complex [goid GO:0042719] [evidence IDA] [pmid 12221072]; go_function: protein transporter activity [goid GO:0008565] [evidence IMP,IPI] [pmid 10469659]; go_process: mitochondrial inner membrane protein import [goid GO:0045039] [evidence IMP,IPI] [pmid 10469659] --- --- --- --- --- --- S0003413 // TIM13 SGDID:S0003413, Chr VII from 858292-858609, Verified ORF // sgd // 11 // --- /// GENSCAN00000019483 // cdna:Genscan chromosome:SGD1:VII:858292:858609:1 // ensembl // 11 // --- /// GENEFINDER00000021719 // cdna:GeneFinder chromosome:SGD1:VII:858292:858609:1 // ensembl // 11 // --- /// YGR181W // cdna:known chromosome:SGD1:VII:858292:858609:1 gene:YGR181W // ensembl // 11 // --- YGR182C // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene -1.13670669507233 -1.83905209274355 1.17605872141476 -1.33703469974117 -1.00326393878792 Max fold change below threshold 4 1.83905209274355 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780133_at SPBC119.18.S1 --- 1.83903845855447 --- --- --- --- 0.493608087301254 0.430957198143005 0.771735370159149 0.501534223556519 0.991943001747131 0.99804699420929 0.969726979732513 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC119.18 /DEF=conserved protein --- --- --- --- --- --- SPBC119.18 // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.1721989943813 -1.14537612883185 1.83903845855447 1.56345771070836 1.01605754941861 Max fold change below threshold 0 1.83903845855447 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779927_at YDR049W.S1 Hypothetical protein 1.83833750306477 195.910987854004 370.143981933594 --- --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 351.577026367188 191.247268676758 200.57470703125 388.7109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR049W /GEN=HEM12 /DB_XREF=GI:6320253 /SEG=NC_001136:+553250,555148 /DEF=Hypothetical ORF /NOTE=Ydr049wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002456 // YDR049W SGDID:S0002456, Chr IV from 553251-555149, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023705 // cdna:GeneFinder chromosome:SGD1:IV:553275:555149:1 // ensembl // 11 // --- /// GENSCAN00000025134 // cdna:Genscan chromosome:SGD1:IV:553275:555149:1 // ensembl // 11 // --- /// YDR049W // cdna:known chromosome:SGD1:IV:553251:555149:1 gene:YDR049W // ensembl // 11 // --- --- No cerevisiae_gene -1.2968641387191 -1.83833750306477 1.0908573569356 -1.75284826073514 1.10562098302188 Max fold change below threshold 4 1.83833750306477 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775271_at YPL230W.S1 Up in StarVation 1.83812404584573 3225.13342285156 1994.58361816406 --- --- --- --- 1928.78930664063 3545.35400390625 2904.91284179688 2060.3779296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL230W /GEN=FAS2 /DB_XREF=GI:6325026 /SEG=NC_001148:+115312,116487 /DEF=Up in StarVation /NOTE=Ypl230wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006151 // YPL230W SGDID:S0006151, Chr XVI from 115312-116487, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017009 // cdna:Genscan chromosome:SGD1:XVI:115312:116487:1 // ensembl // 11 // --- /// YPL230W // cdna:known chromosome:SGD1:XVI:115312:116487:1 gene:YPL230W // ensembl // 11 // --- --- No cerevisiae_gene 1.2495317595323 1.83812404584573 1.08706317123064 1.50608095544472 1.06822343041504 Max fold change below threshold 4 1.83812404584573 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773220_at SPAC6G10.03c.S1 --- 1.83808409265989 --- --- --- --- 3.40411496162415 6.14378833770752 6.25704956054688 5.08694887161255 0.303710997104645 0.111571997404099 0.0654296875 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G10.03c /DEF=abhydrolase family --- --- --- --- --- --- SPAC6G10.03c // |||abhydrolase family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.83745977711464 1.80481223665144 -1.10100607323758 1.83808409265989 1.49435284323814 Max fold change below threshold 4 1.83808409265989 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780118_at SPAC824.04.S1 --- 1.83800515650968 --- --- --- --- 7.10635375976563 13.0615148544312 5.72178268432617 4.80829906463623 0.0375977009534836 0.00805663969367743 0.00585938012227416 0.028564453125 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC824.04 /DEF=WD repeat protein --- --- --- --- --- --- SPAC824.04 // |||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.61177889268978 1.83800515650968 -1.77893314054829 -1.2419824645267 -1.47793505858048 Max fold change below threshold 4 1.83800515650968 Max fold change below threshold PAPPPP No 4 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sc-18SrRNA-5_at AFFX-r2-Sc-18SrRNA-5 --- 1.83766446435356 1643.14758300781 1528.57611083984 --- --- --- --- 1882.208984375 2262.05541992188 1024.23974609375 1174.94323730469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=Z75578 SGD:YLR154C 18S ribosomal RNA corresponds to 1-1799 in Z75578 (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- D83552 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:465250-465418(-) /// L10741 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 18S ribosomal RNA, partial. // gb // 0 // chr12:465251-465539(-) /// D23705 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:465250-465418(-) /// L22158 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA (18S rRNA) fragment. // gb // 0 // chr12:465277-465545(-) /// L19742 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA fragment. // gb // 0 // chr12:465277-465547(-) /// D83552 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:456113-456281(-) /// L10741 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 18S ribosomal RNA, partial. // gb // 0 // chr12:456114-456402(-) /// D23705 // Saccharomyces cerevisiae 18S ribosomal RNA, partial sequence. // gb // 0 // chr12:456113-456281(-) /// L22158 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA (18S rRNA) fragment. // gb // 0 // chr12:456140-456408(-) /// L19742 // Saccharomyces cerevisiae (NRRL Y-12632) 18S ribosomal RNA fragment. // gb // 0 // chr12:456140-456410(-) --- AFFX_control cerevisiae_gene -1.2304609276009 1.20180885263015 1.00751829424577 -1.83766446435356 -1.60195737514331 Max fold change below threshold 4 1.83766446435356 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770248_at YNL011C.S1 Hypothetical protein 1.83763312615591 792.855133056641 428.910125732422 --- --- --- --- 449.137481689453 825.349914550781 760.3603515625 408.682769775391 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL011C /GEN=SPO1 /DB_XREF=GI:6324317 /SEG=NC_001146:-611834,613168 /DEF=Hypothetical ORF /NOTE=Ynl011cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004956 // YNL011C SGDID:S0004956, Chr XIV from 613169-611835, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020028 // cdna:Genscan chromosome:SGD1:XIV:611835:612587:-1 // ensembl // 11 // --- /// GENEFINDER00000020445 // cdna:GeneFinder chromosome:SGD1:XIV:611835:612815:-1 // ensembl // 11 // --- /// YNL011C // cdna:known chromosome:SGD1:XIV:611835:613169:-1 gene:YNL011C // ensembl // 11 // --- --- No cerevisiae_gene 1.49766618784363 1.83763312615591 1.43027491998043 1.69293453020747 -1.09898805358566 Max fold change below threshold 4 1.83763312615591 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770159_at YIL005W.S1 Pdi1p (protein disulfide isomerase)-related protein involved in endoplasmic reticulum retention of resident ER proteins 1.83728622557897 855.456237792969 999.215545654297 EPS1 6621 // protein-ER retention // inferred from mutant phenotype 5789 // endoplasmic reticulum membrane // inferred from direct assay 3756 // protein disulfide isomerase activity // inferred from mutant phenotype /// 3756 // protein disulfide isomerase activity // traceable author statement 967.439636230469 806.383483886719 904.528991699219 1030.99145507813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL005W /GEN=EPS1 /DB_XREF=GI:6322186 /SEG=NC_001141:+345689,347794 /DEF=Pdi1p (protein disulfide isomerase)-related protein involved in endoplasmic reticulum retention of resident ER proteins /NOTE=Eps1p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 10545109]; go_function: protein disulfide isomerase activity [goid GO:0003756] [evidence IMP,TAS] [pmid 11157982]; go_process: protein-ER retention [goid GO:0006621] [evidence IMP] [pmid 10545109] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 0.660000026226044 S0001267 // span:650-672 // numtm:1 S0001267 // EPS1 SGDID:S0001267, Chr IX from 345689-347794, Verified ORF // sgd // 11 // --- /// GENSCAN00000016472 // cdna:Genscan chromosome:SGD1:IX:345689:347794:1 // ensembl // 11 // --- /// GENEFINDER00000018993 // cdna:GeneFinder chromosome:SGD1:IX:345689:347794:1 // ensembl // 11 // --- /// YIL005W // cdna:known chromosome:SGD1:IX:345689:347794:1 gene:YIL005W // ensembl // 11 // --- --- No cerevisiae_gene -1.83728622557897 -1.19972650179722 1.00249133609467 -1.06955072209799 1.06569073301077 Max fold change below threshold 4 1.83728622557897 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775154_at YGL044C.S1 Cleavage and polyadenylation factor I (CF I) component involved in cleavage and polyadenylation of mRNA 3' ends; interacts with the A-rich polyadenylation signal in complex with Rna14p and Hrp1p 1.83719123039665 406.88557434082 415.867919921875 RNA15 6378 // mRNA polyadenylylation // inferred from direct assay /// 6379 // mRNA cleavage // inferred from direct assay 5849 // mRNA cleavage factor complex // inferred from physical interaction 3723 // RNA binding // traceable author statement /// 46982 // protein heterodimerization activity // inferred from physical interaction 397.230865478516 308.325592041016 505.445556640625 434.504974365234 0.000244141003349796 0.00292969006113708 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL044C /GEN=RNA15 /DB_XREF=GI:6321394 /SEG=NC_001139:-416148,417038 /DEF=Cleavage and polyadenylation factor I (CF I) component involved in cleavage and polyadenylation of mRNA 3' ends; interacts with the A-rich polyadenylation signal in complex with Rna14p and Hrp1p /NOTE=Rna15p; go_component: mRNA cleavage factor complex [goid GO:0005849] [evidence IPI] [pmid 11344258]; go_function: cleavage/polyadenylation specificity factor activity [goid GO:0030364] [evidence IDA] [pmid 11344258]; go_process: mRNA cleavage [goid GO:0006379] [evidence IDA] [pmid 11344258]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IDA] [pmid 11344258] --- --- --- --- --- --- S0003012 // RNA15 SGDID:S0003012, Chr VII from 417040-416150, reverse complement, Verified ORF // sgd // 11 // --- /// YGL044C // cdna:known chromosome:SGD1:VII:416150:417040:-1 gene:YGL044C // ensembl // 11 // --- GENSCAN00000019311 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 1.83719123039665 -1.28834866690428 1.09455934297349 1.27242266542342 1.09383487570085 Max fold change below threshold 4 1.83719123039665 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771630_at YDR272W.S1 Cytoplasmic glyoxalase II, catalyzes the hydrolysis of S-D-lactoylglutathione into glutathione and D-lactate 1.83661247821446 1582.05200195313 1103.35888671875 GLO2 5975 // carbohydrate metabolism // inferred from mutant phenotype /// 19243 // methylglyoxal catabolism // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 4416 // hydroxyacylglutathione hydrolase activity // inferred from mutant phenotype 1158.38525390625 1438.80102539063 1725.30297851563 1048.33251953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR272W /GEN=GLO2 /DB_XREF=GI:6320478 /SEG=NC_001136:+1009002,1009826 /DEF=Cytoplasmic glyoxylase-II /NOTE=Glo2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9261170]; go_function: hydroxyacylglutathione hydrolase activity [goid GO:0004416] [evidence IMP] [pmid 9261170]; go_process: carbohydrate metabolism [goid GO:0005975] [evidence IMP] [pmid 9261170] --- --- --- --- --- --- S0002680 // GLO2 SGDID:S0002680, Chr IV from 1009004-1009828, Verified ORF // sgd // 11 // --- /// GENSCAN00000025313 // cdna:Genscan chromosome:SGD1:IV:1009004:1009828:1 // ensembl // 11 // --- /// GENEFINDER00000023547 // cdna:GeneFinder chromosome:SGD1:IV:1009025:1009828:1 // ensembl // 11 // --- /// YDR272W // cdna:known chromosome:SGD1:IV:1009004:1009828:1 gene:YDR272W // ensembl // 11 // --- --- No cerevisiae_gene -1.83661247821446 1.24207470747644 1.45852085654322 1.48940343698061 -1.10497884242321 Max fold change below threshold 4 1.83661247821446 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772137_at YGR033C.S1 Constituent of the mitochondrial inner membrane presequence translocase (TIM23 complex); may regulate protein import by binding to both the translocase of the outer membrane (TOM) and presequence-associated motor (PAM) complexes 1.83604719390215 753.959838867188 480.936950683594 TIM21 30150 // mitochondrial matrix protein import // inferred from physical interaction 5739 // mitochondrion // inferred from direct assay /// 5744 // mitochondrial inner membrane presequence translocase complex // inferred from physical interaction --- 443.131103515625 694.31005859375 813.609619140625 518.742797851563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR033C /GEN=GSC2 /DB_XREF=GI:6321470 /SEG=NC_001139:-554250,554969 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ygr033cp --- --- --- --- --- S0003265 // span:74-96 // numtm:1 S0003265 // FMP17 SGDID:S0003265, Chr VII from 554971-554252, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019365 // cdna:Genscan chromosome:SGD1:VII:554252:554971:-1 // ensembl // 11 // --- /// YGR033C // cdna:known chromosome:SGD1:VII:554252:554971:-1 gene:YGR033C // ensembl // 11 // --- GENEFINDER00000021537 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 1.27180734574244 1.56682763427205 1.44187453341891 1.83604719390215 1.17063052838328 Max fold change below threshold 4 1.83604719390215 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771598_at YOR061W.S1 may have a role in regulation and/or execution of the eukaryotic cell cycle; alpha' subunit of casein kinase II 1.8359645809025 1439.94055175781 917.522735595703 CKA2 82 // G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 86 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 501 // flocculation (sensu Saccharomyces) // inferred from mutant phenotype /// 6356 // regulation of transcription from RNA polymerase I promoter // inferred from direct assay /// 6359 // regulation of transcription from RNA polymerase III promoter // inferred from direct assay /// 6468 // protein amino acid phosphorylation // inferred from direct assay /// 6873 // cell ion homeostasis // inferred from physical interaction /// 6974 // response to DNA damage stimulus // inferred from direct assay /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction 5956 // protein kinase CK2 complex // inferred from direct assay 4682 // protein kinase CK2 activity // inferred from direct assay 874.882507324219 1273.62780761719 1606.25329589844 960.162963867188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR061W /GEN=CKA2 /DB_XREF=GI:6324635 /SEG=NC_001147:+441535,442554 /DEF=may have a role in regulation and/or execution of the eukaryotic cell cycle /NOTE=Cka2p; go_component: protein kinase CK2 complex [goid GO:0005956] [evidence IDA] [pmid 9427841]; go_function: protein kinase CK2 activity [goid GO:0004682] [evidence IDA] [pmid 9427841]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IMP] [pmid 9427841]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence IMP] [pmid 9427841]; go_process: cell ion homeostasis [goid GO:0006873] [evidence IPI] [pmid 9427841]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IPI] [pmid 9427841]; go_process: flocculation (sensu Saccharomyces) [goid GO:0000501] [evidence IMP] [pmid 9427841]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 9427841]; go_process: regulation of transcription from Pol I promoter [goid GO:0006356] [evidence IDA] [pmid 11551505]; go_process: regulation of transcription from Pol III promoter [goid GO:0006359] [evidence IDA] [pmid 11551505]; go_process: response to DNA damage stimulus [goid GO:0006974] [evidence IDA] [pmid 11551505] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 3.0E-66 /// hanks // 3.1.7 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; PCTAIRE1 // 3.0E-60 --- --- S0005587 // CKA2 SGDID:S0005587, Chr XV from 441535-442554, Verified ORF // sgd // 10 // --- /// GENSCAN00000017506 // cdna:Genscan chromosome:SGD1:XV:441535:442554:1 // ensembl // 10 // --- /// GENEFINDER00000022674 // cdna:GeneFinder chromosome:SGD1:XV:441535:442554:1 // ensembl // 10 // --- /// YOR061W // cdna:known chromosome:SGD1:XV:441535:442554:1 gene:YOR061W // ensembl // 10 // --- --- No cerevisiae_gene 1.19828687934171 1.45577011422083 1.22594223903531 1.8359645809025 1.09747646778742 Max fold change below threshold 4 1.8359645809025 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772375_at YOL140W.S1 Acetylornithine aminotransferase, catalyzes the fourth step in the biosynthesis of the arginine precursor ornithine 1.83560571832866 512.602081298828 627.532836914063 ARG8 6526 // arginine biosynthesis // traceable author statement /// 6592 // ornithine biosynthesis // traceable author statement 5759 // mitochondrial matrix // non-traceable author statement 3992 // acetylornithine transaminase activity // inferred from direct assay 601.021911621094 420.07177734375 605.132385253906 654.043762207031 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL140W /GEN=ARG8 /DB_XREF=GI:6324432 /SEG=NC_001147:+58758,60029 /DEF=Acetylornithine aminotransferase, catalyzes the fourth step in the biosynthesis of the arginine precursor ornithine /NOTE=Arg8p; go_component: mitochondrial matrix [goid GO:0005759] [evidence NAS] [pmid 205532]; go_function: acetylornithine transaminase activity [goid GO:0003992] [evidence IDA] [pmid 2199330]; go_process: arginine biosynthesis [goid GO:0006526] [evidence TAS] [pmid 12603335]; go_process: ornithine biosynthesis [goid GO:0006592] [evidence TAS] [pmid 205532] --- --- --- --- --- --- S0005500 // ARG8 SGDID:S0005500, Chr XV from 58758-60029, Verified ORF // sgd // 10 // --- /// GENSCAN00000017358 // cdna:Genscan chromosome:SGD1:XV:58758:60029:1 // ensembl // 10 // --- /// GENEFINDER00000022885 // cdna:GeneFinder chromosome:SGD1:XV:59331:60029:1 // ensembl // 10 // --- /// YOL140W // cdna:known chromosome:SGD1:XV:58758:60029:1 gene:YOL140W // ensembl // 10 // --- --- No cerevisiae_gene 1.83560571832866 -1.43076003682406 1.08014710459673 1.00683914105848 1.08821949676165 Max fold change below threshold 4 1.83560571832866 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771923_at SPAC2G11.02.S1 --- 1.83511738956668 --- --- --- --- 0.472317397594452 0.866757869720459 0.527157545089722 0.467444390058517 0.985840022563934 0.985840022563934 0.99804699420929 0.953857004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2G11.02 /DEF=hypothetical protein --- --- --- --- --- --- SPAC2G11.02 // |||ribosome biogenesis protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.23834102015214 1.83511738956668 1.08528702876301 1.11610867559521 -1.01042478557786 Max fold change below threshold 0 1.83511738956668 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778404_at YMR244W.S1 Hypothetical protein 1.83484728809703 48.5660018920898 78.4686279296875 --- --- --- --- 81.8014221191406 52.549861907959 44.5821418762207 75.1358337402344 0.00122069998178631 0.00292969006113708 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR244W /GEN=ZRC1 /DB_XREF=GI:6323900 /SEG=NC_001145:+757249,758316 /DEF=Hypothetical ORF /NOTE=Ymr244wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004858 // span:7-26 // numtm:1 S0004858 // YMR244W SGDID:S0004858, Chr XIII from 757249-758316, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018921 // cdna:Genscan chromosome:SGD1:XIII:757249:758316:1 // ensembl // 11 // --- /// GENEFINDER00000021877 // cdna:GeneFinder chromosome:SGD1:XIII:757249:758316:1 // ensembl // 11 // --- /// YMR244W // cdna:known chromosome:SGD1:XIII:757249:758316:1 gene:YMR244W // ensembl // 11 // --- --- No cerevisiae_gene 1.18401816995459 -1.55664390255517 1.24215668974347 -1.83484728809703 -1.088713840615 Max fold change below threshold 4 1.83484728809703 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772079_at YLR016C.S1 Hypothetical protein 1.83467533843651 189.816184997559 258.642768859863 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 248.612197875977 135.507461547852 244.124908447266 268.67333984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR016C /GEN=BRE2 /DB_XREF=GI:6323044 /SEG=NC_001144:-176801,177415 /DEF=Hypothetical ORF /NOTE=Ylr016cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004006 // YLR016C SGDID:S0004006, Chr XII from 177415-176801, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017771 // cdna:Genscan chromosome:SGD1:XII:176801:177415:-1 // ensembl // 11 // --- /// GENEFINDER00000024602 // cdna:GeneFinder chromosome:SGD1:XII:176801:177415:-1 // ensembl // 11 // --- /// YLR016C // cdna:known chromosome:SGD1:XII:176801:177415:-1 gene:YLR016C // ensembl // 11 // --- --- No cerevisiae_gene 1.04817311971504 -1.83467533843651 1.59157797905107 -1.01838112078465 1.08069250881158 Max fold change below threshold 4 1.83467533843651 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774859_at YER091C.S1 Cobalamin-independent methionine synthase, involved in amino acid biosynthesis; also called N5-methyltetrahydrofolate homocysteine methyltransferase or 5-methyltetrahydropteroyltriglutamate homocysteine methyltransferase 1.83460094007165 4712.27856445313 4492.00512695313 MET6 9086 // methionine biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 3871 // 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity // inferred from mutant phenotype 4797.6982421875 5259.880859375 4164.67626953125 4186.31201171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER091C /GEN=MET6 /DB_XREF=GI:6320936 /SEG=NC_001137:-339860,342163 /DEF=Cobalamin-independent methionine synthase, involved in amino acid biosynthesis; also called N5-methyltetrahydrofolate homocysteine methyltransferase or 5-methyltetrahydropteroyltriglutamate homocysteine methyltransferase /NOTE=Met6p; go_component: cytoplasm [goid GO:0005737] [evidence ND] [pmid 14562095]; go_function: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity [goid GO:0003871] [evidence IMP] [pmid 3542720]; go_process: methionine biosynthesis [goid GO:0009086] [evidence IMP] [pmid 1101032] --- --- --- --- --- --- S0000893 // MET6 SGDID:S0000893, Chr V from 342163-339860, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016878 // cdna:Genscan chromosome:SGD1:V:339860:342163:-1 // ensembl // 11 // --- /// GENEFINDER00000019708 // cdna:GeneFinder chromosome:SGD1:V:339860:342163:-1 // ensembl // 11 // --- /// YER091C // cdna:known chromosome:SGD1:V:339860:342163:-1 gene:YER091C // ensembl // 11 // --- --- No cerevisiae_gene -1.83460094007165 1.09633424068304 -1.13851933528554 -1.1519978821133 -1.14604411442752 Max fold change below threshold 4 1.83460094007165 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772610_at YBR094W.S1 Hypothetical protein 1.83391593496526 481.227600097656 861.736145019531 --- --- 5737 // cytoplasm // inferred from direct assay --- 834.246276855469 507.556335449219 454.898864746094 889.226013183594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR094W /GEN=PHO5 /DB_XREF=GI:6319570 /SEG=NC_001134:+431993,434254 /DEF=Hypothetical ORF /NOTE=Ybr094wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000298 // YBR094W SGDID:S0000298, Chr II from 432030-434291, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021215 // cdna:Genscan chromosome:SGD1:II:432030:434291:1 // ensembl // 11 // --- /// GENEFINDER00000022316 // cdna:GeneFinder chromosome:SGD1:II:432030:434291:1 // ensembl // 11 // --- /// YBR094W // cdna:known chromosome:SGD1:II:432030:434291:1 gene:YBR094W // ensembl // 11 // --- --- No cerevisiae_gene -1.36417468889036 -1.6436525732993 1.21824586555847 -1.83391593496526 1.06590348420296 Max fold change below threshold 4 1.83391593496526 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776951_at YOL086C.S1 Alcohol dehydrogenase, fermentative isozyme active as homo- or heterotetramers; required for the reduction of acetaldehyde to ethanol, the last step in the glycolytic pathway 1.83346140136915 6167.80053710938 7691.5400390625 ADH1 6113 // fermentation // traceable author statement 5829 // cytosol // traceable author statement 4022 // alcohol dehydrogenase activity // traceable author statement 9270.4150390625 7279.3642578125 5056.23681640625 6112.6650390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL086C /GEN=ADH1 /DB_XREF=GI:6324486 /SEG=NC_001147:-159547,160593 /DEF=Adh protein catalyzes activities for the production of certain carboxylate esters. /NOTE=Adh1p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: alcohol dehydrogenase activity [goid GO:0004022] [evidence TAS]; go_process: fermentation [goid GO:0006113] [evidence TAS] --- --- --- --- --- --- S0005446 // ADH1 SGDID:S0005446, Chr XV from 160593-159547, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017398 // cdna:Genscan chromosome:SGD1:XV:159547:160593:-1 // ensembl // 11 // --- /// GENEFINDER00000022919 // cdna:GeneFinder chromosome:SGD1:XV:159547:160593:-1 // ensembl // 11 // --- /// YOL086C // cdna:known chromosome:SGD1:XV:159547:160593:-1 gene:YOL086C // ensembl // 11 // --- --- No cerevisiae_gene -1.47394485655173 -1.27351987216646 -1.35765451358498 -1.83346140136915 -1.5165913688744 Max fold change below threshold 4 1.83346140136915 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773294_at SPBC660.07.S1 --- 1.83334711904951 --- --- --- --- 6.61807060241699 12.1332206726074 11.0259466171265 3.78977274894714 0.129638999700546 0.0461426004767418 0.0952147990465164 0.171387001872063 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC660.07 /GEN=ntp1 /DEF=O-glycosyl hydrolase --- --- --- --- --- --- D89273 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1788. // gb // 9 // --- /// SPBC660.07 // |ntp1||alpha,alpha trehalase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.06296882703051 1.83334711904951 1.02705377149815 1.66603641446491 -1.74629748030554 Max fold change below threshold 4 1.83334711904951 Max fold change below threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1779201_at YER044C.S1 Endoplasmic reticulum membrane protein, may facilitate protein-protein interactions between the Erg26p dehydrogenase and the Erg27p 3-ketoreductase and/or tether these enzymes to the ER, also interacts with Erg6p 1.83326042665286 4575.93591308594 2706.29479980469 ERG28 6696 // ergosterol biosynthesis // inferred from mutant phenotype /// 6696 // ergosterol biosynthesis // inferred from direct assay /// 6696 // ergosterol biosynthesis // inferred from physical interaction 5789 // endoplasmic reticulum membrane // inferred from direct assay 30674 // protein binding, bridging // inferred from physical interaction 2855.3017578125 5234.51171875 3917.36010742188 2557.28784179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER044C /GEN=ERG28 /DB_XREF=GI:6320883 /SEG=NC_001137:-237569,238015 /DEF=Endoplasmic reticulum membrane protein, may facilitate protein-protein interactions between the Erg26p dehydrogenase and the Erg27p 3-ketoreductase and/or tether these enzymes to the ER /NOTE=Erg28p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 12119386]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence IMP] [pmid 10929718]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence IDA] [pmid 11160377] --- --- --- --- --- S0000846 // span:21-43,91-113 // numtm:2 S0000846 // ERG28 SGDID:S0000846, Chr V from 238015-237569, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019703 // cdna:GeneFinder chromosome:SGD1:V:237569:237964:-1 // ensembl // 11 // --- /// YER044C // cdna:known chromosome:SGD1:V:237569:238015:-1 gene:YER044C // ensembl // 11 // --- --- No cerevisiae_gene 1.40131775832308 1.83326042665286 1.00495933585719 1.37196010779016 -1.11653514756721 Max fold change below threshold 4 1.83326042665286 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770575_at YDR400W.S1 Uridine nucleosidase (uridine-cytidine N-ribohydrolase), cleaves N-glycosidic bonds in nucleosides; involved in recycling pyrimidine deoxy- and ribonucleosides via the pyrimidine salvage pathway 1.83306116306842 301.424179077148 484.807144165039 URH1 6218 // uridine catabolism // inferred from direct assay /// 8655 // pyrimidine salvage // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 45437 // uridine nucleosidase activity // inferred from direct assay 456.870635986328 249.239166259766 353.609191894531 512.74365234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR400W /GEN=URH1 /DB_XREF=GI:37362635 /SEG=NC_001136:+1271051,1272073 /DEF=uridine nucleosidase (uridine ribohydrolase); EC 3.2.2.3 /NOTE=Urh1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: hydrolase activity, acting on glycosyl bonds [goid GO:0016798] [evidence IDA] [pmid 11872485]; go_process: pyrimidine salvage [goid GO:0008655] [evidence IMP] [pmid 11872485]; go_process: uridine catabolism [goid GO:0006218] [evidence IDA] [pmid 12111094] --- --- --- --- --- --- S0002808 // URH1 SGDID:S0002808, Chr IV from 1271053-1272075, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023417 // cdna:GeneFinder chromosome:SGD1:IV:1271053:1272075:1 // ensembl // 11 // --- /// GENSCAN00000025418 // cdna:Genscan chromosome:SGD1:IV:1271053:1272075:1 // ensembl // 11 // --- /// YDR400W // cdna:known chromosome:SGD1:IV:1271053:1272075:1 gene:YDR400W // ensembl // 11 // --- --- No cerevisiae_gene 1.37538746422437 -1.83306116306842 1.05842751762989 -1.29202137970044 1.12229504799931 Max fold change below threshold 4 1.83306116306842 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779483_at YGR007W.S1 Choline phosphate cytidylyltransferase, catalyzes the second step of phosphatidylethanolamine biosynthesis; involved in the maintenance of plasma membrane; similar to mammalian CTP: phosphocholine cytidylyl-transferases 1.83272944188915 1730.04479980469 1148.69213867188 MUQ1 6646 // phosphatidylethanolamine biosynthesis // inferred from mutant phenotype /// 6646 // phosphatidylethanolamine biosynthesis // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4306 // ethanolamine-phosphate cytidylyltransferase activity // inferred from direct assay /// 4306 // ethanolamine-phosphate cytidylyltransferase activity // inferred from sequence similarity /// 4306 // ethanolamine-phosphate cytidylyltransferase activity // inferred from mutant phenotype 1106.68005371094 1431.84448242188 2028.2451171875 1190.70422363281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR007W /GEN=MUQ1 /DB_XREF=GI:6321444 /SEG=NC_001139:+506971,507942 /DEF=choline phosphate cytidylyltransferase (also called phosphoethanolamine cytidylyltransferase or phosphocholine cytidylyltransferase) /NOTE=Muq1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: ethanolamine-phosphate cytidylyltransferase activity [goid GO:0004306] [evidence IDA,IMP,ISS] [pmid 8982874]; go_process: phosphatidylethanolamine biosynthesis [goid GO:0006646] [evidence IMP,TAS] [pmid 8982874] --- --- --- --- --- --- S0003239 // MUQ1 SGDID:S0003239, Chr VII from 506973-507944, Verified ORF // sgd // 10 // --- /// GENSCAN00000019346 // cdna:Genscan chromosome:SGD1:VII:506973:507944:1 // ensembl // 10 // --- /// GENEFINDER00000021595 // cdna:GeneFinder chromosome:SGD1:VII:506973:507944:1 // ensembl // 10 // --- /// YGR007W // cdna:known chromosome:SGD1:VII:506973:507944:1 gene:YGR007W // ensembl // 10 // --- --- No cerevisiae_gene 1.09938458555185 1.29381972469874 1.10868567932907 1.83272944188915 1.07592453631031 Max fold change below threshold 4 1.83272944188915 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778033_at YKL040C.S1 Protein involved in iron metabolism in mitochondria; similar to NifU, which is a protein required for the maturation of the Fe/S clusters of nitrogenase in nitrogen-fixing bacteria 1.832707992378 506.663604736328 371.471878051758 NFU1 6879 // iron ion homeostasis // inferred from mutant phenotype /// 6879 // iron ion homeostasis // inferred from sequence similarity 5759 // mitochondrial matrix // inferred from direct assay --- 354.071166992188 460.328735351563 552.998474121094 388.872589111328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL040C /GEN=NFU1 /DB_XREF=GI:6322811 /SEG=NC_001143:-360702,361472 /DEF=Nifu-like protein /NOTE=Nfu1p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 10468587]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IMP,ISS] [pmid 10468587] --- --- --- --- --- --- S0001523 // NFU1 SGDID:S0001523, Chr XI from 361472-360702, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018388 // cdna:Genscan chromosome:SGD1:XI:360702:361343:-1 // ensembl // 11 // --- /// GENEFINDER00000023114 // cdna:GeneFinder chromosome:SGD1:XI:360702:361472:-1 // ensembl // 11 // --- /// YKL040C // cdna:known chromosome:SGD1:XI:360702:361472:-1 gene:YKL040C // ensembl // 11 // --- --- No cerevisiae_gene 1.832707992378 1.30010229090955 1.4786459538205 1.56182859739408 1.09828934226635 Max fold change below threshold 4 1.832707992378 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778051_at YLR086W.S1 Subunit of the condensin complex, which reorganizes chromosomes during cell division, forms a stable complex with Smc2p that has ATP-hydrolyzing and DNA-binding activity and promotes knotting of circular DNA; potential Cdc28p substrate 1.83244101997921 295.782608032227 189.916000366211 SMC4 70 // mitotic sister chromatid segregation // traceable author statement /// 7076 // mitotic chromosome condensation // inferred from mutant phenotype /// 7076 // mitotic chromosome condensation // traceable author statement 799 // nuclear condensin complex // inferred from physical interaction /// 799 // nuclear condensin complex // traceable author statement 3682 // chromatin binding // inferred from genetic interaction /// 3682 // chromatin binding // inferred from direct assay /// 16887 // ATPase activity // inferred from sequence similarity 176.628570556641 267.903778076172 323.661437988281 203.203430175781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR086W /GEN=SMC4 /DB_XREF=GI:6323115 /SEG=NC_001144:+302244,306500 /DEF=Subunit of the condensin complex, which reorganizes chromosomes during cell division, forms a stable complex with Smc2p that has ATP-hydrolyzing and DNA-binding activity and promotes knotting of circular DNA; potential Cdc28p substrate /NOTE=Smc4p; go_component: nuclear condensin complex [goid GO:0000799] [evidence IPI] [pmid 10811823]; go_component: nuclear condensin complex [goid GO:0000799] [evidence TAS] [pmid 9887095]; go_function: ATPase activity [goid GO:0016887] [evidence ISS] [pmid 9887095]; go_process: mitotic chromosome condensation [goid GO:0007076] [evidence IMP] [pmid 10811823]; go_process: mitotic chromosome condensation [goid GO:0007076] [evidence TAS] [pmid 9887095]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence TAS] [pmid 9887095] --- --- --- --- --- --- S0004076 // SMC4 SGDID:S0004076, Chr XII from 302244-306500, Verified ORF // sgd // 11 // --- /// GENSCAN00000017885 // cdna:Genscan chromosome:SGD1:XII:302244:306500:1 // ensembl // 11 // --- /// GENEFINDER00000024736 // cdna:GeneFinder chromosome:SGD1:XII:302244:306500:1 // ensembl // 11 // --- /// YLR086W // cdna:known chromosome:SGD1:XII:302244:306500:1 gene:YLR086W // ensembl // 11 // --- --- No cerevisiae_gene 1.36836663202462 1.51676355207926 1.00808187616463 1.83244101997921 1.15045617781648 Max fold change below threshold 4 1.83244101997921 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774261_at SPBC21C3.20c.S1 --- 1.83163583378385 --- --- --- --- 8.10038089752197 5.83505821228027 4.93357419967651 7.67151880264282 0.5 0.334473013877869 0.567627012729645 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21C3.20c /GEN=git1 /DEF=C2 domain --- --- --- --- --- --- SPBC21C3.20c // |git1||C2 domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.83163583378385 -1.38822623576817 -1.7836078083534 -1.64188893683875 -1.05590315371858 Max fold change below threshold 4 1.83163583378385 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778287_at YJR114W.S1 Protein that may be involved in survival during stationary phase, substrate for the N-myristoyltransferase Nmt1p 1.8313145776746 80.9257202148438 67.2611122131348 --- --- --- --- 72.2606353759766 67.0418319702148 94.8096084594727 62.261589050293 0.0107421996071935 0.00585938012227416 0.00292969006113708 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR114W /GEN=RSM7 /DB_XREF=GI:6322573 /SEG=NC_001142:+638574,638966 /DEF=Hypothetical ORF /NOTE=Yjr114wp --- --- --- --- --- --- S0003875 // SRF2 SGDID:S0003875, Chr X from 638574-638966, Uncharacterized ORF // sgd // 11 // --- /// YJR114W // cdna:known chromosome:SGD1:X:638574:638966:1 gene:YJR114W // ensembl // 11 // --- S0003874 // sgd // 9 // Negative Strand Matching Probes /// GENSCAN00000024222 // ensembl // 9 // Negative Strand Matching Probes /// GENEFINDER00000024408 // ensembl // 10 // Negative Strand Matching Probes /// YJR113C // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene 1.8313145776746 -1.07784398564885 1.55877147767593 1.31205057866115 -1.16059735188587 Max fold change below threshold 4 1.8313145776746 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1771970_at SPAC8C9.04.S1 --- 1.83118761745471 --- --- --- --- 8.90354633331299 11.6234579086304 16.3040637969971 10.0507736206055 0.24609400331974 0.0461426004767418 0.0805663987994194 0.219482004642487 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8C9.04 /DEF=sequence orphan --- --- --- --- --- --- SPAC8C9.04 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.61397808172518 1.30548631674333 1.06543541724574 1.83118761745471 1.12885060001317 Max fold change below threshold 4 1.83118761745471 Max fold change below threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1769694_at YBL036C.S1 Single-domain racemase, possibly non-specific due to the lack of the second domain, which presumably determines specificity 1.83100000124741 437.105239868164 672.478668212891 --- 6520 // amino acid metabolism // inferred from direct assay 5622 // intracellular // inferred from curator 8784 // alanine racemase activity // inferred from direct assay /// 30170 // pyridoxal phosphate binding // inferred from direct assay 671.925537109375 366.971893310547 507.238586425781 673.031799316406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL036C /GEN=APL3 /DB_XREF=GI:6319435 /SEG=NC_001134:-150412,151185 /DEF=Single-domain racemase, possibly non-specific due to the lack of the second domain, which presumably determines specificity /NOTE=Ybl036cp; go_component: intracellular [goid GO:0005622] [evidence IC] [pmid 12499548]; go_function: alanine racemase activity [goid GO:0008784] [evidence IDA] [pmid 12499548]; go_function: pyridoxal phosphate binding [goid GO:0030170] [evidence IDA] [pmid 12499548]; go_process: amino acid metabolism [goid GO:0006520] [evidence IDA] [pmid 12499548] --- --- --- --- --- --- S0000132 // YBL036C SGDID:S0000132, Chr II from 151223-150450, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021109 // cdna:Genscan chromosome:SGD1:II:150450:151223:-1 // ensembl // 11 // --- /// YBL036C // cdna:known chromosome:SGD1:II:150450:151223:-1 gene:YBL036C // ensembl // 11 // --- --- No cerevisiae_gene 1.32640168417565 -1.83100000124741 -1.03115554637626 -1.32467354631683 1.00164640595711 Max fold change below threshold 4 1.83100000124741 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771330_at YDR235W.S1 U1 snRNP protein involved in splicing, required for U1 snRNP biogenesis; contains multiple tetriatricopeptide repeats 1.83080560605603 177.066215515137 372.219177246094 PRP42 398 // nuclear mRNA splicing, via spliceosome // inferred from mutant phenotype 243 // commitment complex // inferred from physical interaction /// 243 // commitment complex // traceable author statement /// 5685 // snRNP U1 // inferred from physical interaction /// 5685 // snRNP U1 // traceable author statement /// 5685 // snRNP U1 // inferred from direct assay 3723 // RNA binding // inferred from direct assay 313.4228515625 182.9384765625 171.193954467773 431.015502929688 0.000732421991415322 0.00195312988944352 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR235W /GEN=PRP42 /DB_XREF=GI:6320441 /SEG=NC_001136:+933496,935130 /DEF=U1 snRNP protein involved in splicing, required for U1 snRNP biogenesis; contains multiple tetriatricopeptide repeats /NOTE=Prp42p; go_component: commitment complex [goid GO:0000243] [evidence IPI,TAS] [pmid 10072386]; go_component: snRNP U1 [goid GO:0005685] [evidence IPI,TAS] [pmid 10072386]; go_component: snRNP U1 [goid GO:0005685] [evidence IDA] [pmid 11804584]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 9418882]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IMP] [pmid 9418882] --- --- --- --- --- --- S0002643 // PRP42 SGDID:S0002643, Chr IV from 933498-935132, Verified ORF // sgd // 11 // --- /// YDR235W // cdna:known chromosome:SGD1:IV:933498:935132:1 gene:YDR235W // ensembl // 11 // --- --- No cerevisiae_gene 1.04204799498356 -1.71326916814802 1.08869763510882 -1.83080560605603 1.37518850581875 Max fold change below threshold 4 1.83080560605603 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775311_at YHR187W.S1 Subunit of the Elp4p-Iki1p-Elp6p-subcomplex of RNA polymerase II elongator complex, which is a histone acetyltransferase; iki1 mutations confer resistance to the K. lactis toxin zymocin 1.83055967349049 353.967712402344 624.28662109375 IKI1 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 8023 // transcription elongation factor complex // inferred from direct assay /// 16591 // DNA-directed RNA polymerase II, holoenzyme // traceable author statement 16944 // RNA polymerase II transcription elongation factor activity // inferred from mutant phenotype /// 16944 // RNA polymerase II transcription elongation factor activity // inferred from physical interaction 602.447143554688 329.105438232422 378.829986572266 646.126098632813 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR187W /GEN=IKI1 /DB_XREF=GI:6321981 /SEG=NC_001140:+480988,481917 /DEF=Subunit of the Elp4p-Iki1p-Elp6p-subcomplex of RNA polymerase II elongator complex, which is a histone acetyltransferase; iki1 mutations confer resistance to the K. lactis toxin zymocin /NOTE=Iki1p; go_component: DNA-directed RNA polymerase II, holoenzyme [goid GO:0016591] [evidence TAS] [pmid 11929532]; go_component: transcription elongation factor complex [goid GO:0008023] [evidence IDA] [pmid 11689709]; go_function: Pol II transcription elongation factor activity [goid GO:0016944] [evidence IMP,IPI] [pmid 11689709]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP] [pmid 11689709] --- --- --- --- scop // a.4.5.ArsR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; ArsR-like transcriptional regulators // 3.79999995231628 --- S0001230 // IKI1 SGDID:S0001230, Chr VIII from 480989-481918, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020270 // cdna:GeneFinder chromosome:SGD1:VIII:480989:481918:1 // ensembl // 11 // --- /// GENSCAN00000016710 // cdna:Genscan chromosome:SGD1:VIII:481379:481918:1 // ensembl // 9 // --- /// YHR187W // cdna:known chromosome:SGD1:VIII:480989:481918:1 gene:YHR187W // ensembl // 11 // --- --- No cerevisiae_gene -1.29293457750991 -1.83055967349049 1.09085441924183 -1.59028367581394 1.07250255154403 Max fold change below threshold 4 1.83055967349049 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777564_at YGR077C.S1 Intraperoxisomal organizer of the peroxisomal import machinery, tightly associated with the lumenal face of the peroxisomal membrane, essential for peroxisome biogenesis, binds PTS1-signal receptor Pex5p 1.83020989017279 794.140228271484 1484.01892089844 PEX8 6625 // protein-peroxisome targeting // inferred from mutant phenotype /// 7031 // peroxisome organization and biogenesis // traceable author statement 5778 // peroxisomal membrane // inferred from direct assay /// 5782 // peroxisomal matrix // traceable author statement 268 // peroxisome targeting sequence binding // non-traceable author statement 1450.07348632813 792.299011230469 795.9814453125 1517.96435546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR077C /GEN=PEX8 /DB_XREF=GI:6321514 /SEG=NC_001139:-637746,639515 /DEF=Required for peroxisome assembly /NOTE=Pex8p; go_component: peroxisomal matrix [goid GO:0005782] [evidence TAS]; go_component: peroxisomal membrane [goid GO:0005778] [evidence IDA] [pmid 10652355]; go_function: peroxisome targeting sequence binding [goid GO:0000268] [evidence NAS] [pmid 10652355]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence TAS]; go_process: protein-peroxisome targeting [goid GO:0006625] [evidence IMP] [pmid 10652355] --- --- --- --- --- --- S0003309 // PEX8 SGDID:S0003309, Chr VII from 639517-637748, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019396 // cdna:Genscan chromosome:SGD1:VII:637748:639517:-1 // ensembl // 11 // --- /// YGR077C // cdna:known chromosome:SGD1:VII:637748:639517:-1 gene:YGR077C // ensembl // 11 // --- --- No cerevisiae_gene 1.41253112003854 -1.83020989017279 -1.09188195690877 -1.82174282436801 1.04681891626923 Max fold change below threshold 4 1.83020989017279 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771739_at SPBC16G5.14c.S1 --- 1.82946407368928 --- --- --- --- 10.128381729126 10.8122587203979 18.5295104980469 10.1248197555542 0.0676269978284836 0.24609400331974 0.0239257998764515 0.111571997404099 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16G5.14c /GEN=rps3 /DEF=40S ribosomal protein S3 --- --- --- --- --- --- SPBC16G5.14c // |rps3||40S ribosomal protein S3|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.31576230149247 1.06752085471911 1.17995414099197 1.82946407368928 -1.00035180612177 Max fold change below threshold 4 1.82946407368928 Max fold change below threshold APAAPA No 4 0 AAPA 3 1 0 No No x = 1
1770258_at YKL180W.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl17Bp and has similarity to E. coli L22 and rat L17 ribosomal proteins; copurifies with the components of the outer kinetochore DASH complex /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl17Ap and has similarity to E. coli L22 and rat L17 ribosomal proteins 1.82914924465583 2333.46643066406 3524.14318847656 RPL17A /// RPL17B 6412 // protein biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement /// 42729 // DASH complex // inferred from direct assay /// 42729 // DASH complex // inferred from physical interaction 3735 // structural constituent of ribosome // traceable author statement 3899.02319335938 2131.60473632813 2535.328125 3149.26318359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL180W /GEN=RPL17A /DB_XREF=GI:6322668 /SEG=NC_001143:+109274,110134 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl17Bp and has similarity to E. coli L22 and rat L17 ribosomal proteins; copurifies with the components of the outer kinetochore DASH complex /NOTE=Rpl17ap; go_component: DASH complex [goid GO:0042729] [evidence IDA,IPI] [pmid 11799062]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0001663 // RPL17A SGDID:S0001663, Chr XI from 109274-109582,109889-110134, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022995 // cdna:GeneFinder chromosome:SGD1:XI:109274:110134:1 // ensembl // 11 // --- /// YKL180W // cdna:known chromosome:SGD1:XI:109274:110134:1 gene:YKL180W // ensembl // 11 // --- GENSCAN00000018285 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 1.0430555930381 -1.82914924465583 -1.72423499105515 -1.53787715085572 -1.23807473877431 Max fold change below threshold 4 1.82914924465583 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774517_at YPL277C.S1 Hypothetical protein /// Hypothetical protein 1.82909744886989 36.9007987976074 26.8399076461792 --- --- 5624 // membrane fraction // inferred from direct assay --- 23.6048336029053 30.6260566711426 43.1755409240723 30.0749816894531 0.00585938012227416 0.014160200022161 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL277C /GEN=HSP32 /DB_XREF=GI:6324978 /SEG=NC_001148:-15405,16868 /DEF=Hypothetical ORF /NOTE=Ypl277cp; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 11935221]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005916 // span:7-24 // numtm:1 /// S0006198 // span:7-24 // numtm:1 S0006198 // YPL277C SGDID:S0006198, Chr XVI from 16868-15405, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016970 // cdna:Genscan chromosome:SGD1:XVI:15405:16340:-1 // ensembl // 11 // --- /// GENEFINDER00000020967 // cdna:GeneFinder chromosome:SGD1:XVI:15405:16868:-1 // ensembl // 11 // --- /// YPL277C // cdna:known chromosome:SGD1:XVI:15405:16868:-1 gene:YPL277C // ensembl // 11 // --- S0005916 // sgd // 3 // Cross Hyb Matching Probes /// GENEFINDER00000022902 // ensembl // 3 // Cross Hyb Matching Probes /// GENSCAN00000017834 // ensembl // 3 // Cross Hyb Matching Probes /// YOR389W // ensembl // 3 // Cross Hyb Matching Probes No cerevisiae_gene 1.34606085087014 1.29744853051509 1.35084949729434 1.82909744886989 1.27410267724791 Max fold change below threshold 4 1.82909744886989 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1772651_at YDR222W.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.82885566677948 1009.62091064453 636.252624511719 --- --- 5737 // cytoplasm // inferred from direct assay --- 612.152282714844 942.038208007813 1077.20361328125 660.352966308594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR222W /GEN=SPR28 /DB_XREF=GI:6320428 /SEG=NC_001136:+910046,911293 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ydr222wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002630 // YDR222W SGDID:S0002630, Chr IV from 910048-911295, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025270 // cdna:Genscan chromosome:SGD1:IV:910351:911295:1 // ensembl // 11 // --- /// YDR222W // cdna:known chromosome:SGD1:IV:910048:911295:1 gene:YDR222W // ensembl // 11 // --- GENEFINDER00000023554 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 1.33733177007874 1.53889519749882 -1.82885566677948 1.75969876074617 1.07873969427997 Max fold change below threshold 4 1.82885566677948 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776150_at YGL191W.S1 Subunit VIa of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; not essential for cytochrome c oxidase activity but may modulate activity in response to ATP 1.8283483429308 7930.88452148438 5122.1943359375 COX13 9060 // aerobic respiration // inferred from mutant phenotype 5751 // respiratory chain complex IV (sensu Eukaryota) // inferred from physical interaction 4129 // cytochrome-c oxidase activity // inferred from direct assay /// 30234 // enzyme regulator activity // inferred from direct assay 5673.01953125 10372.255859375 5489.51318359375 4571.369140625 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL191W /GEN=COX13 /DB_XREF=GI:6321247 /SEG=NC_001139:+144812,145201 /DEF=Subunit VIa of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; not essential for cytochrome c oxidase activity but may modulate activity in response to ATP /NOTE=Cox13p; go_component: respiratory chain complex IV (sensu Eukarya) [goid GO:0005751] [evidence IPI] [pmid 1331058]; go_function: cytochrome-c oxidase activity [goid GO:0004129] [evidence IDA] [pmid 1331058]; go_function: enzyme regulator activity [goid GO:0030234] [evidence IDA] [pmid 10429195]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 8395517] --- --- --- --- --- S0003159 // span:51-73 // numtm:1 S0003159 // COX13 SGDID:S0003159, Chr VII from 144814-145203, Verified ORF // sgd // 11 // --- /// GENSCAN00000019206 // cdna:Genscan chromosome:SGD1:VII:144814:145203:1 // ensembl // 11 // --- /// GENEFINDER00000021535 // cdna:GeneFinder chromosome:SGD1:VII:144814:145203:1 // ensembl // 11 // --- /// YGL191W // cdna:known chromosome:SGD1:VII:144814:145203:1 gene:YGL191W // ensembl // 11 // --- --- No cerevisiae_gene -1.31560806458133 1.8283483429308 -1.22284958037756 -1.03342852845398 -1.24098915592592 Max fold change below threshold 4 1.8283483429308 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773145_s_at YGR109W-A.S1 TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// Hypothetical protein /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition 1.82829564850037 11.9272689819336 15.4956994056702 --- 6319 // Ty element transposition // inferred from sequence similarity 943 // retrotransposon nucleocapsid // inferred from sequence similarity 3723 // RNA binding // inferred from sequence similarity /// 3887 // DNA-directed DNA polymerase activity // inferred from sequence similarity /// 3964 // RNA-directed DNA polymerase activity // inferred from sequence similarity /// 4540 // ribonuclease activity // inferred from sequence similarity /// 5515 // protein binding // inferred from sequence similarity /// 8233 // peptidase activity // inferred from sequence similarity 10.9576234817505 11.498724937439 12.3558130264282 20.0337753295898 0.018554700538516 0.274170011281967 0.0375977009534836 0.00805663969367743 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR109W-A /GEN=CLB6 /DB_XREF=GI:7839174 /SEG=NC_001139:+707612,708484 /DEF=TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /NOTE=Ygr109w-ap; go_component: retrotransposon nucleocapsid [goid GO:0000943] [evidence ISS] [pmid 9582191]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 9582191]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 9582191]; go_process: Ty element transposition [goid GO:0006319] [evidence ISS] [pmid 9582191] --- --- --- --- --- --- S0007346 // YGR109W-A SGDID:S0007346, Chr VII from 707614-708486, Ty ORF // sgd // 11 // --- /// S0007347 // YGR109W-B SGDID:S0007347, Chr VII from 707614-708463,708465-712258, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0001342 // YIL080W SGDID:S0001342, Chr IX from 205632-206481,206483-210354, one base removed to allow translational frameshift, Pseudogene Ty ORF // sgd // 11 // --- /// S0003537 // YIL082W-A SGDID:S0003537, Chr IX from 205632-206482,206484-210129, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// GENSCAN00000016414 // cdna:Genscan chromosome:SGD1:IX:205632:206504:1 // ensembl // 11 // --- /// GENEFINDER00000019055 // cdna:GeneFinder chromosome:SGD1:IX:205632:206504:1 // ensembl // 11 // --- /// GENSCAN00000019424 // cdna:Genscan chromosome:SGD1:VII:707614:708486:1 // ensembl // 11 // --- /// GENEFINDER00000021563 // cdna:GeneFinder chromosome:SGD1:VII:707614:708486:1 // ensembl // 11 // --- /// YIL082W-A // cdna:known chromosome:SGD1:IX:205632:210129:1 gene:YIL082W-A // ensembl // 11 // --- /// YIL082W // cdna:known chromosome:SGD1:IX:205632:206504:1 gene:YIL082W // ensembl // 11 // --- /// YIL080W // cdna:pseudogene chromosome:SGD1:IX:205632:210354:1 gene:YIL080W // ensembl // 11 // --- /// YGR109W-A // cdna:known chromosome:SGD1:VII:707614:708486:1 gene:YGR109W-A // ensembl // 11 // --- /// YGR109W-B // cdna:known chromosome:SGD1:VII:707614:712258:1 gene:YGR109W-B // ensembl // 11 // --- --- No cerevisiae_gene 1.15291907214866 1.04938127839396 1.28612518071305 1.12759970690783 1.82829564850037 Max fold change below threshold 4 1.82829564850037 Max fold change below threshold PPAPPP No 4 0 PAPP 1 3 0 No No 2 < x = 3
1777867_at YJR127C.S1 Zinc-finger protein that localizes to the nucleus, putative transcriptional regulator of ALD6 1.82810875977179 1618.70935058594 981.381866455078 ZMS1 --- 5634 // nucleus // inferred from direct assay 3700 // transcription factor activity // inferred from sequence similarity 933.871276855469 1707.21826171875 1530.20043945313 1028.89245605469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR127C /GEN=ZMS1 /DB_XREF=GI:6322588 /SEG=NC_001142:-658832,662974 /DEF=Product of gene unknown /NOTE=Zms1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: transcription factor activity [goid GO:0003700] [evidence ISS] [pmid 12584194]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003888 // ZMS1 SGDID:S0003888, Chr X from 662974-658832, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024233 // cdna:Genscan chromosome:SGD1:X:658832:662629:-1 // ensembl // 11 // --- /// GENEFINDER00000024509 // cdna:GeneFinder chromosome:SGD1:X:658832:662974:-1 // ensembl // 11 // --- /// YJR127C // cdna:known chromosome:SGD1:X:658832:662974:-1 gene:YJR127C // ensembl // 11 // --- --- No cerevisiae_gene 1.301556343051 1.82810875977179 -1.1556436179899 1.63855605946637 1.1017497609726 Max fold change below threshold 4 1.82810875977179 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771323_at YFL020C.S1 Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Part of 23-member seripauperin multigene family, active during alcoholic fermentation, regulated by anaerobiosis, inhibited by oxygen, repressed by heme /// Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 1.8273725429703 366.722549438477 464.908294677734 PAU5 /// PAU7 --- --- --- 447.922119140625 352.775299072266 380.669799804688 481.894470214844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL020C /GEN=PAU5 /DB_XREF=GI:14318499 /SEG=NC_001138:-99225,99593 /DEF=Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /NOTE=Pau5p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000073 // span:7-26 // numtm:1 S0001874 // PAU5 SGDID:S0001874, Chr VI from 99593-99225, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018568 // cdna:GeneFinder chromosome:SGD1:VI:99225:99593:-1 // ensembl // 11 // --- /// GENSCAN00000023226 // cdna:Genscan chromosome:SGD1:VI:99225:99593:-1 // ensembl // 11 // --- /// YFL020C // cdna:known chromosome:SGD1:VI:99225:99593:-1 gene:YFL020C // ensembl // 11 // --- --- No cerevisiae_gene -1.8273725429703 -1.2697094164999 1.43221834872286 -1.17666838653984 1.07584432565955 Max fold change below threshold 4 1.8273725429703 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774230_at YMR272W-B.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 1.82731598115418 17.5116853713989 32.4914360046387 --- --- --- --- 22.983943939209 17.7575931549072 17.2657775878906 41.9989280700684 0.00195312988944352 0.129638999700546 0.00805663969367743 0.00122069998178631 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR272W-B /GEN=SCS7 /DB_XREF=GI:33438861 /SEG=NC_001145:+811088,811195 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ymr272w-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028696 // YMR272W-B SGDID:S0028696, Chr XIII from 811088-811195, Uncharacterized ORF // sgd // 11 // --- /// YMR272W-B // cdna:known chromosome:SGD1:XIII:811088:811195:1 gene:YMR272W-B // ensembl // 11 // --- --- No cerevisiae_gene -1.25393497318862 -1.29431639404676 1.45612597826128 -1.33118498846694 1.82731598115418 Max fold change below threshold 4 1.82731598115418 Max fold change below threshold PPAPPP No 2 0 PAPP 1 3 0 No No 2 < x = 3
1775489_at YNL181W.S1 Protein required for cell viability 1.82643839978529 752.269287109375 629.43115234375 --- --- 5635 // nuclear membrane // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay 16491 // oxidoreductase activity // inferred from sequence similarity /// 16726 // oxidoreductase activity, acting on CH2 groups, NAD or NADP as acceptor // inferred from sequence similarity 547.611755371094 633.2470703125 871.29150390625 711.250549316406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL181W /GEN=IPI3 /DB_XREF=GI:6324148 /SEG=NC_001146:+298335,299558 /DEF=Protein required for cell viability /NOTE=Ynl181wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14690591]; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 14690591]; go_function: oxidoreductase activity [goid GO:0016491] [evidence ISS] [pmid 14690591]; go_function: oxidoreductase activity, acting on CH2 groups, NAD or NADP as acceptor [goid GO:0016726] [evidence ISS] [pmid 9811845]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005125 // span:289-311 // numtm:1 S0005125 // YNL181W SGDID:S0005125, Chr XIV from 298335-299558, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019896 // cdna:Genscan chromosome:SGD1:XIV:298335:299558:1 // ensembl // 11 // --- /// GENEFINDER00000020494 // cdna:GeneFinder chromosome:SGD1:XIV:298335:299558:1 // ensembl // 11 // --- /// YNL181W // cdna:known chromosome:SGD1:XIV:298335:299558:1 gene:YNL181W // ensembl // 11 // --- --- No cerevisiae_gene 1.82643839978529 1.15637961402668 1.09938586085643 1.59107523781299 1.29882264641018 Max fold change below threshold 4 1.82643839978529 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780052_at YJR142W.S1 Hypothetical protein 1.82621949445723 667.899230957031 495.492111206055 --- --- --- --- 445.854583740234 521.570129394531 814.228332519531 545.129638671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR142W /GEN=HIR3 /DB_XREF=GI:6322602 /SEG=NC_001142:+697056,698084 /DEF=Hypothetical ORF /NOTE=Yjr142wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003903 // YJR142W SGDID:S0003903, Chr X from 697056-698084, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024246 // cdna:Genscan chromosome:SGD1:X:697056:698084:1 // ensembl // 11 // --- /// GENEFINDER00000024528 // cdna:GeneFinder chromosome:SGD1:X:697056:698084:1 // ensembl // 11 // --- /// YJR142W // cdna:known chromosome:SGD1:X:697056:698084:1 gene:YJR142W // ensembl // 11 // --- --- No cerevisiae_gene 1.09135596518575 1.16982116684576 1.36695140092279 1.82621949445723 1.2226624073231 Max fold change below threshold 4 1.82621949445723 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771611_at YIR004W.S1 Cytosolic J-domain-containing protein, required for peroxisomal protein import and involved in peroxisome assembly, homologous to E. coli DnaJ 1.82526331172449 467.426116943359 640.280151367188 DJP1 16558 // peroxisome matrix protein import // inferred from mutant phenotype 5829 // cytosol // inferred from direct assay 51087 // chaperone binding // inferred from sequence similarity 635.781188964844 348.322998046875 586.529235839844 644.779113769531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR004W /GEN=DJP1 /DB_XREF=GI:6322194 /SEG=NC_001141:+363218,364516 /DEF=Cytosolic J-domain-containing protein, required for peroxisomal protein import and involved in peroxisome assembly, homologous to E. coli DnaJ /NOTE=Djp1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 9679141]; go_function: co-chaperone activity [goid GO:0003767] [evidence IMP] [pmid 9679141]; go_process: peroxisome matrix protein import [goid GO:0016558] [evidence IMP] [pmid 9679141] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.00000009770741E-25 --- S0001443 // DJP1 SGDID:S0001443, Chr IX from 363218-364516, Verified ORF // sgd // 11 // --- /// GENSCAN00000016479 // cdna:Genscan chromosome:SGD1:IX:363218:364516:1 // ensembl // 11 // --- /// GENEFINDER00000019125 // cdna:GeneFinder chromosome:SGD1:IX:363218:364516:1 // ensembl // 11 // --- /// YIR004W // cdna:known chromosome:SGD1:IX:363218:364516:1 gene:YIR004W // ensembl // 11 // --- --- No cerevisiae_gene -1.21184019488769 -1.82526331172449 1.44621686515199 -1.08397186383127 1.01415254958917 Max fold change below threshold 4 1.82526331172449 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772336_at YLR056W.S1 C-5 sterol desaturase, catalyzes the introduction of a C-5(6) double bond into episterol, a precursor in ergosterol biosynthesis; mutants are viable, but cannot grow on non-fermentable carbon sources 1.82509972530271 1769.44549560547 2923.05236816406 ERG3 6696 // ergosterol biosynthesis // traceable author statement 5783 // endoplasmic reticulum // traceable author statement 248 // C-5 sterol desaturase activity // traceable author statement 3088.11596679688 1846.86511230469 1692.02587890625 2757.98876953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR056W /GEN=ERG3 /DB_XREF=GI:6323085 /SEG=NC_001144:+253862,254959 /DEF=C-5 sterol desaturase, catalyzes the introduction of a C-5(6) double bond into episterol, a precursor in ergosterol biosynthesis; mutants are viable, but cannot grow on non-fermentable carbon sources /NOTE=Erg3p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS]; go_function: C-5 sterol desaturase activity [goid GO:0000248] [evidence TAS]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence TAS] --- --- --- --- --- S0004046 // span:96-118,139-161,181-203 // numtm:3 S0004046 // ERG3 SGDID:S0004046, Chr XII from 253862-254959, Verified ORF // sgd // 11 // --- /// GENSCAN00000017863 // cdna:Genscan chromosome:SGD1:XII:253862:254959:1 // ensembl // 11 // --- /// GENEFINDER00000024803 // cdna:GeneFinder chromosome:SGD1:XII:254264:254959:1 // ensembl // 11 // --- /// YLR056W // cdna:known chromosome:SGD1:XII:253862:254959:1 gene:YLR056W // ensembl // 11 // --- --- No cerevisiae_gene -1.0529784846108 -1.67208527911561 -1.56834337468533 -1.82509972530271 -1.11969852847578 Max fold change below threshold 4 1.82509972530271 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771289_at YDR531W.S1 Pantothenate kinase (ATP:D-pantothenate 4'-phosphotransferase, EC 2.7.1.33) catalyzes the first committed step in the universal biosynthetic pathway leading to CoA. 1.82497432364094 1718.06085205078 2566.89404296875 --- 15937 // coenzyme A biosynthesis // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4594 // pantothenate kinase activity // inferred from sequence similarity 2591.169921875 2016.28259277344 1419.83911132813 2542.6181640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR531W /GEN=APA2 /DB_XREF=GI:6320740 /SEG=NC_001136:+1498220,1499323 /DEF=Pantothenate kinase (ATP:D-pantothenate 4'-phosphotransferase, EC 2.7.1.33) catalyzes the first committed step in the universal biosynthetic pathway leading to CoA. /NOTE=Ydr531wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14690591]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_function: pantothenate kinase activity [goid GO:0004594] [evidence ISS] [pmid 9890959]; go_process: coenzyme A biosynthesis [goid GO:0015937] [evidence ISS] [pmid 9890959] --- --- --- --- --- --- S0002939 // YDR531W SGDID:S0002939, Chr IV from 1498222-1499325, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025513 // cdna:Genscan chromosome:SGD1:IV:1498222:1499325:1 // ensembl // 11 // --- /// GENEFINDER00000023548 // cdna:GeneFinder chromosome:SGD1:IV:1498537:1499325:1 // ensembl // 11 // --- /// YDR531W // cdna:known chromosome:SGD1:IV:1498222:1499325:1 gene:YDR531W // ensembl // 11 // --- --- No cerevisiae_gene 1.0774824769217 -1.28512239859731 -1.16240870895962 -1.82497432364094 -1.01909518247715 Max fold change below threshold 4 1.82497432364094 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779462_at YGL151W.S1 Component of the RNA polymerase II mediator complex, which is required for transcriptional activation and also has a role in basal transcription 1.82459558941374 225.070892333984 399.434463500977 NUT1 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 375.225677490234 205.648681640625 244.493103027344 423.643249511719 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL151W /GEN=NUT1 /DB_XREF=GI:6321287 /SEG=NC_001139:+217527,220925 /DEF=Component of the RNA polymerase II mediator complex, which is required for transcriptional activation and also has a role in basal transcription /NOTE=Nut1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9671481]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP] [pmid 9671481] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 4.90000009536743 --- S0003119 // NUT1 SGDID:S0003119, Chr VII from 217529-220927, Verified ORF // sgd // 11 // --- /// GENSCAN00000019235 // cdna:Genscan chromosome:SGD1:VII:217589:220927:1 // ensembl // 11 // --- /// GENEFINDER00000021479 // cdna:GeneFinder chromosome:SGD1:VII:219578:220927:1 // ensembl // 11 // --- /// YGL151W // cdna:known chromosome:SGD1:VII:217529:220927:1 gene:YGL151W // ensembl // 11 // --- --- No cerevisiae_gene 1.04968957890332 -1.82459558941374 1.11431385490259 -1.53470863940186 1.12903587074673 Max fold change below threshold 4 1.82459558941374 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772723_at YNL062C.S1 Subunit of tRNA (1-methyladenosine) methyltransferase with Gcd14p, required for the modification of the adenine at position 58 in tRNAs, especially tRNAi-Met; first identified as a negative regulator of GCN4 expression 1.8244328801866 502.789093017578 895.888458251953 GCD10 6413 // translational initiation // traceable author statement /// 30488 // tRNA methylation // inferred from direct assay 5634 // nucleus // inferred from direct assay 49 // tRNA binding // inferred from direct assay /// 16429 // tRNA (adenine-N1-)-methyltransferase activity // inferred from direct assay /// 16429 // tRNA (adenine-N1-)-methyltransferase activity // inferred from physical interaction 816.587097167969 485.458679199219 520.119506835938 975.189819335938 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL062C /GEN=GCD10 /DB_XREF=GI:6324267 /SEG=NC_001146:-508774,510210 /DEF=Subunit of tRNA (1-methyladenosine) methyltransferase with Gcd14p, required for the modification of the adenine at position 58 in tRNAs, especially tRNAi-Met; first identified as a negative regulator of GCN4 expression /NOTE=Gcd10p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9851972]; go_function: tRNA methyltransferase activity [goid GO:0008175] [evidence IDA] [pmid 10779558]; go_process: tRNA methylation [goid GO:0030488] [evidence IDA] [pmid 10779558]; go_process: translational initiation [goid GO:0006413] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0005006 // GCD10 SGDID:S0005006, Chr XIV from 510211-508775, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000019984 // cdna:Genscan chromosome:SGD1:XIV:508775:510211:-1 // ensembl // 10 // --- /// YNL062C // cdna:known chromosome:SGD1:XIV:508775:510211:-1 gene:YNL062C // ensembl // 10 // --- GENEFINDER00000020655 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 1.8244328801866 -1.6820939292196 -1.06052516869642 -1.56999898376345 1.19422633876781 Max fold change below threshold 4 1.8244328801866 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773341_at YMR105W-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching 1.82417899029697 59.1639423370361 92.8278617858887 --- --- --- --- 96.9473571777344 53.1457481384277 65.1821365356445 88.708366394043 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR105W-A /GEN=PGM2 /DB_XREF=GI:33438854 /SEG=NC_001145:+478063,478257 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Ymr105w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028692 // YMR105W-A SGDID:S0028692, Chr XIII from 478063-478257, Uncharacterized ORF // sgd // 11 // --- /// YMR105W-A // cdna:known chromosome:SGD1:XIII:478063:478257:1 gene:YMR105W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.34938381873627 -1.82417899029697 1.45999585742882 -1.48733015409397 -1.09287726872451 Max fold change below threshold 4 1.82417899029697 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770332_at YCR076C.S1 Hypothetical protein 1.82401296620282 911.816986083984 672.631103515625 --- --- --- --- 660.370666503906 731.438293457031 1092.19567871094 684.891540527344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR076C /GEN=ERS1 /DB_XREF=GI:6319920 /SEG=NC_001135:-249289,250041 /DEF=Hypothetical ORF /NOTE=Ycr076cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000672 // YCR076C SGDID:S0000672, Chr III from 250041-249289, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022512 // cdna:Genscan chromosome:SGD1:III:249289:250041:-1 // ensembl // 11 // --- /// GENEFINDER00000023366 // cdna:GeneFinder chromosome:SGD1:III:249289:250041:-1 // ensembl // 11 // --- /// YCR076C // cdna:known chromosome:SGD1:III:249289:250041:-1 gene:YCR076C // ensembl // 11 // --- --- No cerevisiae_gene -1.18166065306837 1.10761778279669 1.82401296620282 1.65391307353667 1.03713198551543 Max fold change below threshold 4 1.82401296620282 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779609_at YER143W.S1 DNA damage-inducible v-SNARE binding protein, contains a ubiquitin-associated (UBA) domain, may act as a negative regulator of constitutive exocytosis, may play a role in S-phase checkpoint control 1.82369555929051 679.927032470703 727.813629150391 DDI1 6511 // ubiquitin-dependent protein catabolism // inferred from mutant phenotype /// 16192 // vesicle-mediated transport // inferred from genetic interaction /// 16192 // vesicle-mediated transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay 149 // SNARE binding // inferred from direct assay 740.78076171875 606.270385742188 753.583679199219 714.846496582031 0.000732421991415322 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER143W /GEN=DDI1 /DB_XREF=GI:6320991 /SEG=NC_001137:+456314,457600 /DEF=DNA damage-inducible v-SNARE binding protein, contains a ubiquitin-associated (UBA) domain, may act as a negative regulator of constitutive exocytosis, may play a role in S-phase checkpoint control /NOTE=Ddi1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 10330187]; go_function: SNARE binding [goid GO:0000149] [evidence IDA] [pmid 10330187]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence IMP] [pmid 12051757]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IGI,IMP] [pmid 10330187] --- --- --- --- --- --- S0000945 // DDI1 SGDID:S0000945, Chr V from 456314-457600, Verified ORF // sgd // 11 // --- /// GENSCAN00000016922 // cdna:Genscan chromosome:SGD1:V:456314:457600:1 // ensembl // 11 // --- /// GENEFINDER00000019766 // cdna:GeneFinder chromosome:SGD1:V:456797:457600:1 // ensembl // 11 // --- /// YER143W // cdna:known chromosome:SGD1:V:456314:457600:1 gene:YER143W // ensembl // 11 // --- --- No cerevisiae_gene -1.82369555929051 -1.22186532468001 -1.01100758962576 1.01728300482691 -1.03627948833871 Max fold change below threshold 4 1.82369555929051 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770501_at YER102W.S1 Protein component of the small (40S) ribosomal subunit; identical to Rps8Bp and has similarity to rat S8 ribosomal protein /// Protein component of the small (40S) ribosomal subunit; identical to Rps8Ap and has similarity to rat S8 ribosomal protein 1.82309233723504 2380.35723876953 3167.22583007813 RPS8B /// RPS8A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3202.10302734375 1900.73767089844 2859.97680664063 3132.3486328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER102W /GEN=RPS8B /DB_XREF=GI:6320949 /SEG=NC_001137:+363096,363698 /DEF=Protein component of the small (40S) ribosomal subunit; identical to Rps8Bp and has similarity to rat S8 ribosomal protein /NOTE=Rps8bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0000904 // RPS8B SGDID:S0000904, Chr V from 363096-363698, Verified ORF // sgd // 11 // --- /// GENSCAN00000016887 // cdna:Genscan chromosome:SGD1:V:363096:363698:1 // ensembl // 11 // --- /// GENEFINDER00000019593 // cdna:GeneFinder chromosome:SGD1:V:363096:363698:1 // ensembl // 11 // --- /// YER102W // cdna:known chromosome:SGD1:V:363096:363698:1 gene:YER102W // ensembl // 11 // --- --- No cerevisiae_gene 1.82309233723504 -1.68466331591681 -1.33568843922654 -1.1196255228045 -1.02226903921248 Max fold change below threshold 4 1.82309233723504 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770979_at YIL134W.S1 Protein required for transport of flavin adenine dinucleotide (FAD) from mitochondria, where it is synthesized from riboflavin, to the cytosol 1.8227866967551 57.006368637085 83.2961769104004 FLX1 15883 // FAD transport // inferred from mutant phenotype 5739 // mitochondrion // inferred from sequence similarity /// 5739 // mitochondrion // inferred from direct assay 15230 // FAD transporter activity // inferred from mutant phenotype /// 15230 // FAD transporter activity // inferred from sequence similarity 76.3739776611328 53.7025604248047 60.3101768493652 90.218376159668 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL134W /GEN=FLX1 /DB_XREF=GI:6322057 /SEG=NC_001141:+97395,98330 /DEF=Protein required for transport of flavin adenine dinucleotide (FAD) from mitochondria, where it is synthesized from riboflavin, to the cytosol /NOTE=Flx1p; go_component: mitochondrion [goid GO:0005739] [evidence ISS] [pmid 8631763]; go_function: flavin-adenine dinucleotide transporter activity [goid GO:0015230] [evidence IMP] [pmid 14555654]; go_function: flavin-adenine dinucleotide transporter activity [goid GO:0015230] [evidence ISS] [pmid 8631763]; go_process: flavin-adenine dinucleotide transport [goid GO:0015883] [evidence IMP] [pmid 14555654] --- --- --- --- --- S0001396 // span:76-98,126-148,182-204 // numtm:3 S0001396 // FLX1 SGDID:S0001396, Chr IX from 97395-98330, Verified ORF // sgd // 11 // --- /// GENSCAN00000016375 // cdna:Genscan chromosome:SGD1:IX:97395:98330:1 // ensembl // 11 // --- /// YIL134W // cdna:known chromosome:SGD1:IX:97395:98330:1 gene:YIL134W // ensembl // 11 // --- --- No cerevisiae_gene 1.8227866967551 -1.42216641175001 1.14298740621088 -1.2663530709235 1.18127114656725 Max fold change below threshold 4 1.8227866967551 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772212_at YKL119C.S1 Integral membrane protein required for vacuolar H+-ATPase (V-ATPase) function, although not an actual component of the V-ATPase complex; functions in the assembly of the V-ATPase; localized to the endoplasmic reticulum (ER) 1.82272649484705 190.137252807617 335.627212524414 VPH2 6461 // protein complex assembly // inferred from mutant phenotype /// 7035 // vacuolar acidification // inferred from mutant phenotype 5789 // endoplasmic reticulum membrane // inferred from direct assay --- 310.575256347656 170.390487670898 209.884017944336 360.679168701172 0.00415039015933871 0.00415039015933871 0.0107421996071935 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL119C /GEN=VPH2 /DB_XREF=GI:6322731 /SEG=NC_001143:-218216,218863 /DEF=Required for the biogenesis of a functional vacuolar ATPase (V-ATPase), but not part of the final enzyme complex. /NOTE=Vph2p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 9325326]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP] [pmid 9325326]; go_process: vacuolar acidification [goid GO:0007035] [evidence IMP] [pmid 1628805] --- --- --- --- --- S0001602 // span:136-158,168-190 // numtm:2 S0001602 // VPH2 SGDID:S0001602, Chr XI from 218863-218216, reverse complement, Verified ORF // sgd // 11 // --- /// YKL119C // cdna:known chromosome:SGD1:XI:218216:218863:-1 gene:YKL119C // ensembl // 11 // --- --- No cerevisiae_gene 1.65260741697152 -1.82272649484705 1.12735294435552 -1.4797470497731 1.1613261563163 Max fold change below threshold 4 1.82272649484705 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1776563_at YMR019W.S1 Protein that binds Sin3p in a two-hybrid assay; contains a Zn(II)2Cys6 zinc finger domain characteristic of DNA-binding proteins 1.82270753379058 645.183502197266 1208.36572265625 STB4 --- 5634 // nucleus // inferred from sequence similarity /// 5634 // nucleus // inferred from curator 3677 // DNA binding // inferred from sequence similarity /// 3677 // DNA binding // inferred from physical interaction 1138.14501953125 665.941528320313 624.425476074219 1278.58642578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR019W /GEN=STB4 /DB_XREF=GI:6323661 /SEG=NC_001145:+312155,315004 /DEF=binds Sin3p in two-hybrid assay /NOTE=Stb4p; go_component: nucleus [goid GO:0005634] [evidence ISS] [pmid 9393435]; go_function: DNA binding [goid GO:0003677] [evidence ISS] [pmid 9393435]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004621 // span:12-34 // numtm:1 S0004621 // STB4 SGDID:S0004621, Chr XIII from 312155-315004, Verified ORF // sgd // 11 // --- /// GENSCAN00000018732 // cdna:Genscan chromosome:SGD1:XIII:312320:315004:1 // ensembl // 11 // --- /// GENEFINDER00000022039 // cdna:GeneFinder chromosome:SGD1:XIII:312320:315004:1 // ensembl // 11 // --- /// YMR019W // cdna:known chromosome:SGD1:XIII:312155:315004:1 gene:YMR019W // ensembl // 11 // --- --- No cerevisiae_gene -1.47456953493657 -1.70907650466245 -1.020644783873 -1.82270753379058 1.12339500137499 Max fold change below threshold 4 1.82270753379058 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779973_at YKR091W.S1 Cytoplasmic protein that, when overexpressed, suppresses the lethality of a rad53 null mutation; potential Cdc28p substrate 1.82264606180574 771.065368652344 529.736755371094 SRL3 6139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolism // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay --- 483.169860839844 661.483093261719 880.647644042969 576.303649902344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR091W /GEN=SRL3 /DB_XREF=GI:6322944 /SEG=NC_001143:+611447,611905 /DEF=Cytoplasmic protein that, when overexpressed, suppresses the lethality of a rad53 null mutation; potential Cdc28p substrate /NOTE=Srl3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ISS] [pmid 9744871]; go_process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism [goid GO:0006139] [evidence IGI] [pmid 9744871] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 5.19999980926514 --- S0001799 // SRL3 SGDID:S0001799, Chr XI from 611167-611907, Verified ORF // sgd // 10 // --- /// GENSCAN00000018493 // cdna:Genscan chromosome:SGD1:XI:611167:611907:1 // ensembl // 10 // --- /// GENEFINDER00000023060 // cdna:GeneFinder chromosome:SGD1:XI:611449:611907:1 // ensembl // 10 // --- /// YKR091W // cdna:known chromosome:SGD1:XI:611167:611907:1 gene:YKR091W // ensembl // 10 // --- --- No cerevisiae_gene 1.3950606694706 1.36904874842966 -1.23676382329252 1.82264606180574 1.19275579172222 Max fold change below threshold 4 1.82264606180574 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770063_at YOL021C.S1 Nucleolar exosome component, involved in rRNA processing and RNA degradation, binds Gsp1p/Ran and enhances the GEF activity of Srm1p, implicated in mitotic control, homologous to the E. coli RNase R of the RNase II family 1.82254644102516 677.525665283203 867.186859130859 DIS3 6365 // 35S primary transcript processing // traceable author statement /// 6402 // mRNA catabolism // inferred from physical interaction 176 // nuclear exosome (RNase complex) // inferred from direct assay /// 177 // cytoplasmic exosome (RNase complex) // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 175 // 3'-5'-exoribonuclease activity // traceable author statement 795.197326660156 603.546508789063 751.504821777344 939.176391601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL021C /GEN=DIS3 /DB_XREF=GI:6324552 /SEG=NC_001147:-282421,285426 /DEF=Nucleolar exosome component, involved in rRNA processing and RNA degradation, binds Gsp1p/Ran and enhances the GEF activity of Srm1p, implicated in mitotic control, homologous to the E. coli RNase R of the RNase II family /NOTE=Dis3p; go_component: cytoplasmic exosome (RNase complex) [goid GO:0000177] [evidence IDA] [pmid 10465791]; go_component: nuclear exosome (RNase complex) [goid GO:0000176] [evidence IDA] [pmid 10465791]; go_function: 3'-5'-exoribonuclease activity [goid GO:0000175] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: mRNA catabolism [goid GO:0006402] [evidence IPI] [pmid 10465791] --- --- --- --- --- --- S0005381 // DIS3 SGDID:S0005381, Chr XV from 285426-282421, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017450 // cdna:Genscan chromosome:SGD1:XV:282421:285426:-1 // ensembl // 11 // --- /// GENEFINDER00000022916 // cdna:GeneFinder chromosome:SGD1:XV:282421:285426:-1 // ensembl // 11 // --- /// YOL021C // cdna:known chromosome:SGD1:XV:282421:285426:-1 gene:YOL021C // ensembl // 11 // --- --- No cerevisiae_gene 1.82254644102516 -1.31754109265849 -1.11106872706027 -1.05814001935407 1.18106080102925 Max fold change below threshold 4 1.82254644102516 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778782_at YOL115W.S1 Catalytic subunit of TRAMP (Trf4/Pap2p-Mtr4p-Air1p/2p), a nuclear poly (A) polymerase complex involved in RNA quality control; catalyzes polyadenylation of unmodified tRNAs, and snoRNA and rRNA precursors; disputed role as a DNA polymerase 1.82241146802743 225.272232055664 302.319427490234 PAP2 6265 // DNA topological change // inferred from genetic interaction /// 6265 // DNA topological change // inferred from mutant phenotype /// 7062 // sister chromatid cohesion // traceable author statement /// 7064 // mitotic sister chromatid cohesion // inferred from mutant phenotype /// 7076 // mitotic chromosome condensation // inferred from mutant phenotype /// 7076 // mitotic chromosome condensation // inferred from physical interaction /// 16075 // rRNA catabolism // inferred from mutant phenotype /// 16077 // snoRNA catabolism // inferred from mutant phenotype /// 16078 // tRNA catabolism // inferred from direct assay /// 16078 // tRNA catabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 31499 // TRAMP complex // inferred from direct assay /// 31499 // TRAMP complex // inferred from physical interaction 3887 // DNA-directed DNA polymerase activity // inferred from direct assay /// 3887 // DNA-directed DNA polymerase activity // non-traceable author statement /// 4652 // polynucleotide adenylyltransferase activity // inferred from direct assay /// 4652 // polynucleotide adenylyltransferase activity // inferred from mutant phenotype 288.080139160156 250.02131652832 200.523147583008 316.558715820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL115W /GEN=TRF4 /DB_XREF=GI:6324457 /SEG=NC_001147:+101474,103228 /DEF=TRF5 homolog; Involved in mitotic chromsome condensation; associates with Smc1p and Smc2p /NOTE=Trf4p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10066793]; go_function: DNA-directed DNA polymerase activity [goid GO:0003887] [evidence IDA] [pmid 10926539]; go_process: DNA topological change [goid GO:0006265] [evidence IGI,IMP] [pmid 8647385]; go_process: mitotic chromosome condensation [goid GO:0007076] [evidence IMP,IPI] [pmid 8895658]; go_process: mitotic sister chromatid cohesion [goid GO:0007064] [evidence IMP] [pmid 10926539]; go_process: sister chromatid cohesion [goid GO:0007062] [evidence TAS] [pmid 10066793] --- --- --- --- --- --- S0005475 // TRF4 SGDID:S0005475, Chr XV from 101474-103228, Verified ORF // sgd // 11 // --- /// GENSCAN00000017374 // cdna:Genscan chromosome:SGD1:XV:101474:103228:1 // ensembl // 11 // --- /// GENEFINDER00000022602 // cdna:GeneFinder chromosome:SGD1:XV:101474:103228:1 // ensembl // 11 // --- /// YOL115W // cdna:known chromosome:SGD1:XV:101474:103228:1 gene:YOL115W // ensembl // 11 // --- --- No cerevisiae_gene 1.82241146802743 -1.15222231112252 -1.12215523761046 -1.43664281471995 1.09885643884782 Max fold change below threshold 4 1.82241146802743 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769585_at YBR285W.S1 Hypothetical protein 1.82220263779641 1455.26446533203 1479.36889648438 --- --- --- --- 1523.97021484375 1671.14306640625 1239.38586425781 1434.767578125 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR285W /GEN=SSH1 /DB_XREF=GI:6319762 /SEG=NC_001134:+773880,774314 /DEF=Hypothetical ORF /NOTE=Ybr285wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000489 // YBR285W SGDID:S0000489, Chr II from 773918-774352, Uncharacterized ORF // sgd // 11 // --- /// YBR285W // cdna:known chromosome:SGD1:II:773918:774352:1 gene:YBR285W // ensembl // 11 // --- --- No cerevisiae_gene -1.82220263779641 1.09657199998334 1.12969607422533 -1.22961723123763 -1.0621721859894 Max fold change below threshold 4 1.82220263779641 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776829_at YCL026C-B.S1 Hypothetical protein 1.82210980933204 687.024536132813 1154.81652832031 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1074.66955566406 589.794067382813 784.255004882813 1234.96350097656 0.000732421991415322 0.0107421996071935 0.00415039015933871 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL026C-B /GEN=FUS1 /DB_XREF=GI:10383764 /SEG=NC_001135:-73405,73986 /DEF=Hypothetical ORF /NOTE=Ycl026c-bp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007548 // YCL026C-B SGDID:S0007548, Chr III from 73986-73405, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022445 // cdna:Genscan chromosome:SGD1:III:73405:73986:-1 // ensembl // 11 // --- /// GENEFINDER00000023316 // cdna:GeneFinder chromosome:SGD1:III:73405:73986:-1 // ensembl // 11 // --- /// YCL026C-B // cdna:known chromosome:SGD1:III:73405:73986:-1 gene:YCL026C-B // ensembl // 11 // --- --- No cerevisiae_gene -1.37952916676134 -1.82210980933204 1.42054919452552 -1.37030627662318 1.14915649602956 Max fold change below threshold 4 1.82210980933204 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1779578_at YDR059C.S1 Ubiquitin-conjugating enzyme that mediates selective degradation of short-lived and abnormal proteins, central component of the cellular stress response; expression is heat inducible 1.82195687298319 1340.38537597656 1365.3203125 UBC5 209 // protein polyubiquitination // traceable author statement /// 209 // protein polyubiquitination // inferred from direct assay /// 6897 // endocytosis // traceable author statement /// 6950 // response to stress // traceable author statement /// 6950 // response to stress // inferred from direct assay /// 6986 // response to unfolded protein // traceable author statement /// 30437 // sporulation (sensu Fungi) // traceable author statement 502 // proteasome complex (sensu Eukaryota) // inferred from physical interaction 4840 // ubiquitin conjugating enzyme activity // traceable author statement /// 4840 // ubiquitin conjugating enzyme activity // inferred from direct assay 1344.51220703125 1286.28955078125 1394.48120117188 1386.12841796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR059C /GEN=UBC5 /DB_XREF=GI:6320264 /SEG=NC_001136:-569230,569766 /DEF=Ubiquitin-conjugating enzyme that mediates selective degradation of short-lived and abnormal proteins, central component of the cellular stress response; expression is heat inducible /NOTE=Ubc5p; go_component: proteasome complex (sensu Eukarya) [goid GO:0000502] [evidence IPI] [pmid 10848595]; go_function: ubiquitin conjugating enzyme activity [goid GO:0004840] [evidence TAS] [pmid 8982460]; go_process: endocytosis [goid GO:0006897] [evidence TAS] [pmid 8982460]; go_process: protein monoubiquitination [goid GO:0006513] [evidence TAS] [pmid 8982460]; go_process: protein polyubiquitination [goid GO:0000209] [evidence TAS] [pmid 8982460]; go_process: response to stress [goid GO:0006950] [evidence TAS] [pmid 8982460]; go_process: response to unfolded protein [goid GO:0006986] [evidence TAS] [pmid 8982460]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence TAS] [pmid 8982460] --- --- --- --- --- --- S0002466 // UBC5 SGDID:S0002466, Chr IV from 569767-569721,569630-569231, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YDR059C // cdna:known chromosome:SGD1:IV:569231:569767:-1 gene:YDR059C // ensembl // 11 // --- --- No cerevisiae_gene -1.82195687298319 -1.04526403578 1.20755596117173 1.03716514724025 1.0309526464095 Max fold change below threshold 4 1.82195687298319 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775724_at YPL070W.S1 Protein of unknown function, localized to the cytoplasm; computational analysis of large-scale protein-protein interaction data suggests a possible role in transcriptional regulation 1.82166053741919 437.646118164063 656.363250732422 MUK1 45449 // regulation of transcription // RCA 5737 // cytoplasm // inferred from direct assay --- 615.298034667969 399.8046875 475.487548828125 697.428466796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL070W /GEN=MUK1 /DB_XREF=GI:6325187 /SEG=NC_001148:+420943,422781 /DEF=Hypothetical ORF /NOTE=Muk1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: regulation of transcription [goid GO:0045449] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0005991 // MUK1 SGDID:S0005991, Chr XVI from 420945-422783, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000017134 // cdna:Genscan chromosome:SGD1:XVI:421038:422783:1 // ensembl // 10 // --- /// YPL070W // cdna:known chromosome:SGD1:XVI:420945:422783:1 gene:YPL070W // ensembl // 10 // --- --- No cerevisiae_gene -1.82166053741919 -1.53899654982902 -1.07485012829696 -1.29403606084832 1.13348073210282 Max fold change below threshold 4 1.82166053741919 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771658_at YMR309C.S1 Subunit of the eukaryotic translation initiation factor 3 (eIF3), involved in the assembly of preinitiation complex and start codon selection 1.82153435683304 617.4619140625 1006.00244140625 NIP1 6413 // translational initiation // inferred from mutant phenotype /// 6413 // translational initiation // inferred from genetic interaction /// 6413 // translational initiation // inferred from direct assay 5737 // cytoplasm // inferred from direct assay /// 5852 // eukaryotic translation initiation factor 3 complex // inferred from physical interaction /// 5852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay 3743 // translation initiation factor activity // inferred from direct assay 966.407470703125 530.545837402344 704.377990722656 1045.59741210938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR309C /GEN=NIP1 /DB_XREF=GI:6323969 /SEG=NC_001145:-892987,895425 /DEF=Protein required for nuclear import with some similarity to Nsr1p, another protein involved in nuclear transport /NOTE=Nip1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: eukaryotic translation initiation factor 3 complex [goid GO:0005852] [evidence IDA,IPI] [pmid 9671501]; go_function: translation initiation factor activity [goid GO:0003743] [evidence IDA] [pmid 9671501]; go_process: translational initiation [goid GO:0006413] [evidence IDA] [pmid 9671501]; go_process: translational initiation [goid GO:0006413] [evidence IGI,IMP] [pmid 9722586] --- --- --- --- --- --- S0004926 // NIP1 SGDID:S0004926, Chr XIII from 895425-892987, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018975 // cdna:Genscan chromosome:SGD1:XIII:892987:895425:-1 // ensembl // 11 // --- /// GENEFINDER00000021990 // cdna:GeneFinder chromosome:SGD1:XIII:892987:895425:-1 // ensembl // 11 // --- /// YMR309C // cdna:known chromosome:SGD1:XIII:892987:895425:-1 gene:YMR309C // ensembl // 11 // --- --- No cerevisiae_gene 1.57628943981225 -1.82153435683304 -1.07143657080641 -1.37200123148601 1.08194260061818 Max fold change below threshold 4 1.82153435683304 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771125_at YDR538W.S1 Phenylacrylic acid decarboxylase, confers resistance to cinnamic acid, decarboxylates aromatic carboxylic acids to the corresponding vinyl derivatives 1.82131792363835 417.47216796875 309.064849853516 PAD1 19439 // aromatic compound catabolism // inferred from direct assay 5739 // mitochondrion // inferred from direct assay 16831 // carboxy-lyase activity // inferred from direct assay 279.571105957031 442.294189453125 392.650146484375 338.55859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR538W /GEN=PAD1 /DB_XREF=GI:6320746 /SEG=NC_001136:+1510888,1511616 /DEF=Phenylacrylic acid decarboxylase /NOTE=Pad1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: carboxy-lyase activity [goid GO:0016831] [evidence IDA] [pmid 11693915]; go_process: aromatic compound catabolism [goid GO:0019439] [evidence IDA] [pmid 11693915] --- --- --- --- --- --- S0002946 // PAD1 SGDID:S0002946, Chr IV from 1510890-1511618, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023637 // cdna:GeneFinder chromosome:SGD1:IV:1510890:1511618:1 // ensembl // 11 // --- /// YDR538W // cdna:known chromosome:SGD1:IV:1510890:1511618:1 gene:YDR538W // ensembl // 11 // --- GENSCAN00000025518 // ensembl // 6 // Negative Strand Matching Probes /// YDR537C // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene 1.82131792363835 1.58204542611461 1.64468628158585 1.40447327394671 1.21099279051403 Max fold change below threshold 4 1.82131792363835 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777204_at YLR068W.S1 Protein of unknown function, required for survival upon exposure to K1 killer toxin; involved in processing the 35S rRNA primary transcript to generate the 20S and 27SA2 pre-rRNA transcripts 1.82105072572162 128.244857788086 146.611198425293 FYV7 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 137.202011108398 130.147445678711 126.342269897461 156.020385742188 0.000244141003349796 0.000244140625 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR068W /GEN=FYV7 /DB_XREF=GI:6323097 /SEG=NC_001144:+271009,271464 /DEF=Protein of unknown function, required for survival upon exposure to K1 killer toxin; involved in processing the 35S rRNA primary transcript to generate the 20S and 27SA2 pre-rRNA transcripts /NOTE=Fyv7p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP] [pmid 12837249] --- --- --- --- --- --- S0004058 // FYV7 SGDID:S0004058, Chr XII from 271009-271464, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024624 // cdna:GeneFinder chromosome:SGD1:XII:271009:271464:1 // ensembl // 11 // --- /// YLR068W // cdna:known chromosome:SGD1:XII:271009:271464:1 gene:YLR068W // ensembl // 11 // --- --- No cerevisiae_gene 1.82105072572162 -1.05420440941348 -1.38786388094866 -1.08595493194598 1.13715815447429 Max fold change below threshold 4 1.82105072572162 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771619_at YGL047W.S1 Essential protein required for the second step of dolichyl-linked oligosaccharide synthesis; involved in N-linked glycosylation; similar to bacterial glycosyltransferases 1.82099150278543 733.851623535156 705.081146240234 ALG13 6488 // dolichol-linked oligosaccharide biosynthesis // inferred from direct assay /// 6488 // dolichol-linked oligosaccharide biosynthesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay 16757 // transferase activity, transferring glycosyl groups // inferred from sequence similarity /// 16757 // transferase activity, transferring glycosyl groups // inferred from mutant phenotype /// 16758 // transferase activity, transferring hexosyl groups // inferred from sequence similarity 637.810974121094 651.472412109375 816.230834960938 772.351318359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL047W /GEN=RPT6 /DB_XREF=GI:6321391 /SEG=NC_001139:+411553,412161 /DEF=Protein required for cell viability /NOTE=Ygl047wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14690591]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_function: transferase activity, transferring hexosyl groups [goid GO:0016758] [evidence ISS] [pmid 14690591]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003015 // YGL047W SGDID:S0003015, Chr VII from 411555-412163, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019309 // cdna:Genscan chromosome:SGD1:VII:411555:412163:1 // ensembl // 11 // --- /// YGL047W // cdna:known chromosome:SGD1:VII:411555:412163:1 gene:YGL047W // ensembl // 11 // --- --- No cerevisiae_gene -1.15146221744541 1.02141925827963 1.82099150278543 1.27973783468638 1.21094077978774 Max fold change below threshold 4 1.82099150278543 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770279_at YIR034C.S1 Saccharopine dehydrogenase (NAD+, L-lysine-forming), catalyzes the conversion of saccharopine to L-lysine, which is the final step in the lysine biosynthesis pathway 1.82096362721501 648.259124755859 1012.08438110352 LYS1 19878 // lysine biosynthesis, aminoadipic pathway // traceable author statement /// 19878 // lysine biosynthesis, aminoadipic pathway // non-traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5777 // peroxisome // inferred from direct assay 4754 // saccharopine dehydrogenase (NAD+, L-lysine-forming) activity // traceable author statement 971.002624511719 533.235595703125 763.282653808594 1053.16613769531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR034C /GEN=LYS1 /DB_XREF=GI:6322225 /SEG=NC_001141:-419612,420733 /DEF=saccharopine dehydrogenase /NOTE=Lys1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: peroxisome [goid GO:0005777] [evidence IDA] [pmid 10077615]; go_function: saccharopine dehydrogenase (NAD+, L-lysine-forming) activity [goid GO:0004754] [evidence TAS] [pmid 3928261]; go_process: lysine biosynthesis, aminoadipic pathway [goid GO:0019878] [evidence NAS] [pmid 11752249]; go_process: lysine biosynthesis, aminoadipic pathway [goid GO:0019878] [evidence TAS] [pmid 3928261] --- --- --- --- --- --- S0001473 // LYS1 SGDID:S0001473, Chr IX from 420733-419612, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016502 // cdna:Genscan chromosome:SGD1:IX:419612:420733:-1 // ensembl // 11 // --- /// GENEFINDER00000019061 // cdna:GeneFinder chromosome:SGD1:IX:419612:420733:-1 // ensembl // 11 // --- /// YIR034C // cdna:known chromosome:SGD1:IX:419612:420733:-1 gene:YIR034C // ensembl // 11 // --- --- No cerevisiae_gene 1.23203297372975 -1.82096362721501 -1.14374974387879 -1.27214030040726 1.08461718960328 Max fold change below threshold 4 1.82096362721501 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773140_s_at YDR038C.S1 P-type ATPase sodium pump, involved in Na+ and Li+ efflux to allow salt tolerance /// P-type ATPase sodium pump, involved in Na+ efflux to allow salt tolerance; likely not involved in Li+ efflux /// Protein with similarity to P-type ATPase sodium pumps 1.82083268007399 3625.271484375 4818.36572265625 ENA1 /// ENA2 /// ENA5 6814 // sodium ion transport // inferred from mutant phenotype /// 6814 // sodium ion transport // inferred from genetic interaction /// 6814 // sodium ion transport // inferred from sequence similarity 5886 // plasma membrane // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from sequence similarity 15662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from genetic interaction /// 15662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from mutant phenotype /// 15662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from sequence similarity 5290.8427734375 4344.81591796875 2905.72705078125 4345.888671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR038C /GEN=ENA5 /DB_XREF=GI:6320243 /SEG=NC_001136:-527417,530692 /DEF=Protein with similarity to P-type ATPase sodium pumps /NOTE=Ena5p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 7664728]; go_function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [goid GO:0015662] [evidence ISS] [pmid 7664728]; go_process: sodium ion transport [goid GO:0006814] [evidence ISS] [pmid 7664728] --- --- --- ec // A1A1_HUMAN // (P05023) Sodium/potassium-transporting ATPase alpha-1 chain precursor (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) // 0.0 --- S0002445 // span:65-87,91-110,286-303,313-335,815-837,852-869,897-919,939-961,990-1012,1022-1044 // numtm:10 /// S0002446 // span:65-87,91-110,286-303,313-335,815-837,852-869,897-919,939-961,990-1012,1022-1044 // numtm:10 /// S0002447 // span:65-87,91-110,286-303,313-335,815-837,852-869,897-919,939-961,990-1012,1022-1044 // numtm:10 S0002445 // ENA5 SGDID:S0002445, Chr IV from 530693-527418, reverse complement, Verified ORF // sgd // 11 // --- /// S0002446 // ENA2 SGDID:S0002446, Chr IV from 534578-531303, reverse complement, Verified ORF // sgd // 11 // --- /// S0002447 // ENA1 SGDID:S0002447, Chr IV from 538463-535188, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023801 // cdna:GeneFinder chromosome:SGD1:IV:527418:530693:-1 // ensembl // 11 // --- /// GENSCAN00000025126 // cdna:Genscan chromosome:SGD1:IV:527418:530693:-1 // ensembl // 11 // --- /// GENEFINDER00000023816 // cdna:GeneFinder chromosome:SGD1:IV:531303:534578:-1 // ensembl // 11 // --- /// GENSCAN00000025127 // cdna:Genscan chromosome:SGD1:IV:531303:534578:-1 // ensembl // 11 // --- /// GENEFINDER00000023735 // cdna:GeneFinder chromosome:SGD1:IV:535188:538463:-1 // ensembl // 11 // --- /// GENSCAN00000025128 // cdna:Genscan chromosome:SGD1:IV:535188:538463:-1 // ensembl // 11 // --- /// YDR038C // cdna:known chromosome:SGD1:IV:527418:530693:-1 gene:YDR038C // ensembl // 11 // --- /// YDR039C // cdna:known chromosome:SGD1:IV:531303:534578:-1 gene:YDR039C // ensembl // 11 // --- /// YDR040C // cdna:known chromosome:SGD1:IV:535188:538463:-1 gene:YDR040C // ensembl // 11 // --- --- No cerevisiae_gene -1.64383403287563 -1.21773692449346 1.00319787117446 -1.82083268007399 -1.21743633417899 Max fold change below threshold 4 1.82083268007399 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777379_s_at YOR312C.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl20Bp and has similarity to rat L18a ribosomal protein /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl20Ap and has similarity to rat L18a ribosomal protein 1.82048575542367 1629.70916748047 2614.28051757813 RPL20A /// RPL20B 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 2824.3203125 1551.41027832031 1708.00805664063 2404.24072265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR312C /GEN=RPL20B /DB_XREF=GI:6324888 /SEG=NC_001147:-900245,901176 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl20Ap and has similarity to rat L18a ribosomal protein /NOTE=Rpl20bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004855 // RPL20A SGDID:S0004855, Chr XIII from 754196-754178,753741-753224, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0005839 // RPL20B SGDID:S0005839, Chr XV from 901176-901170,900762-900245, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000018919 // cdna:Genscan chromosome:SGD1:XIII:753224:753766:-1 // ensembl // 11 // --- /// GENEFINDER00000022043 // cdna:GeneFinder chromosome:SGD1:XIII:753224:753664:-1 // ensembl // 10 // --- /// GENSCAN00000017767 // cdna:Genscan chromosome:SGD1:XV:900245:900685:-1 // ensembl // 10 // --- /// GENEFINDER00000022768 // cdna:GeneFinder chromosome:SGD1:XV:900245:900685:-1 // ensembl // 10 // --- /// YMR242C // cdna:known chromosome:SGD1:XIII:753224:754196:-1 gene:YMR242C // ensembl // 11 // --- /// YOR312C // cdna:known chromosome:SGD1:XV:900245:901176:-1 gene:YOR312C // ensembl // 11 // --- --- No cerevisiae_gene 1.15388943481977 -1.82048575542367 -1.56660170766717 -1.65357552121562 -1.17472442999786 Max fold change below threshold 4 1.82048575542367 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771716_s_at YDL243C.S1 Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role /// Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase, involved in the oxidative stress response 1.82045597240402 360.104965209961 245.956611633301 AAD16 /// AAD4 6081 // aldehyde metabolism // inferred from sequence similarity --- 18456 // aryl-alcohol dehydrogenase activity // inferred from sequence similarity 235.811416625977 290.925628662109 429.284301757813 256.101806640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL243C /GEN=AAD4 /DB_XREF=GI:6319958 /SEG=NC_001136:-17577,18566 /DEF=Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase, involved in the oxidative stress response /NOTE=Aad4p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: aryl-alcohol dehydrogenase activity [goid GO:0018456] [evidence ISS] [pmid 10572264]; go_process: aldehyde metabolism [goid GO:0006081] [evidence ISS] [pmid 10572264] --- --- --- --- scop // a.2.10.Epsilon subunit of F1F0-ATP synthase C-terminal domain // All alpha proteins; Long alpha-hairpin; Epsilon subunit of F1F0-ATP synthase C-terminal domain; Epsilon subunit of F1F0-ATP synthase C-terminal domain // 2.40000009536743 --- S0002402 // AAD4 SGDID:S0002402, Chr IV from 18566-17577, reverse complement, Verified ORF // sgd // 11 // --- /// S0001837 // AAD16 SGDID:S0001837, Chr VI from 14763-14305, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023737 // cdna:GeneFinder chromosome:SGD1:IV:17577:18557:-1 // ensembl // 11 // --- /// GENSCAN00000024921 // cdna:Genscan chromosome:SGD1:IV:17577:18566:-1 // ensembl // 11 // --- /// GENEFINDER00000018563 // cdna:GeneFinder chromosome:SGD1:VI:14305:15431:-1 // ensembl // 11 // --- /// GENSCAN00000023193 // cdna:Genscan chromosome:SGD1:VI:14305:14745:-1 // ensembl // 11 // --- /// YDL243C // cdna:known chromosome:SGD1:IV:17577:18566:-1 gene:YDL243C // ensembl // 11 // --- /// YFL057C // cdna:known chromosome:SGD1:VI:14305:14763:-1 gene:YFL057C // ensembl // 11 // --- --- No cerevisiae_gene -1.36867541221306 1.23372155947627 1.30310065194841 1.82045597240402 1.08604498588307 Max fold change below threshold 4 1.82045597240402 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776199_at YPR132W.S1 Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit, required for translational accuracy; nearly identical to Rps23Ap and similar to E. coli S12 and rat S23 ribosomal proteins; deletion of both RPS23A and RPS23B is lethal /// Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit, required for translational accuracy; nearly identical to Rps23Bp and similar to E. coli S12 and rat S23 ribosomal proteins; deletion of both RPS23A and RPS23B is lethal 1.82030291156586 1496.03228759766 2446.69543457031 RPS23B /// RPS23A 6412 // protein biosynthesis // traceable author statement /// 6450 // regulation of translational fidelity // inferred from mutant phenotype 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 2452.67041015625 1347.39685058594 1644.66772460938 2440.72045898438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR132W /GEN=RPS23B /DB_XREF=GI:6325389 /SEG=NC_001148:+794959,795761 /DEF=Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit, required for translational accuracy; nearly identical to Rps23Ap and similar to E. coli S12 and rat S23 ribosomal proteins; deletion of both RPS23A and RPS23B is lethal /NOTE=Rps23bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: regulation of translational fidelity [goid GO:0006450] [evidence IMP] [pmid 8950190] --- --- --- --- --- --- S0006336 // RPS23B SGDID:S0006336, Chr XVI from 794961-795025,795391-795763, intron sequence removed, Verified ORF // sgd // 11 // --- /// YPR132W // cdna:known chromosome:SGD1:XVI:794961:795763:1 gene:YPR132W // ensembl // 11 // --- --- No cerevisiae_gene 1.40210267866119 -1.82030291156586 -1.35066696836436 -1.49128627835071 -1.00489607530755 Max fold change below threshold 4 1.82030291156586 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773134_at YMR089C.S1 Component, with Afg3p, of the mitochondrial inner membrane m-AAA protease that mediates degradation of misfolded or unassembled proteins and is also required for correct assembly of mitochondrial enzyme complexes 1.82026901436019 1156.76916503906 1294.00958251953 YTA12 6461 // protein complex assembly // inferred from mutant phenotype /// 6465 // signal peptide processing // inferred from mutant phenotype /// 6508 // proteolysis and peptidolysis // inferred from mutant phenotype /// 45041 // mitochondrial intermembrane space protein import // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5743 // mitochondrial inner membrane // inferred from direct assay /// 5745 // m-AAA complex // inferred from direct assay 8237 // metallopeptidase activity // inferred from mutant phenotype /// 16887 // ATPase activity // inferred from sequence similarity 1311.7490234375 1003.4990234375 1310.03930664063 1276.27014160156 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR089C /GEN=YTA12 /DB_XREF=GI:6323736 /SEG=NC_001145:-445608,448085 /DEF=Component, with Afg3p, of the mitochondrial inner membrane m-AAA protease that mediates degradation of misfolded or unassembled proteins and is also required for correct assembly of mitochondrial enzyme complexes /NOTE=Yta12p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: m-AAA complex [goid GO:0005745] [evidence IDA] [pmid 8681382]; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 7929327]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11914276]; go_function: ATPase activity [goid GO:0016887] [evidence ISS] [pmid 7929327]; go_function: metallopeptidase activity [goid GO:0008237] [evidence IMP] [pmid 8681382]; go_process: mitochondrial intermembrane space protein import [goid GO:0045041] [evidence TAS] [pmid 12417197]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP] [pmid 8681382]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence IMP] [pmid 8681382] --- --- --- --- scop // a.4.5.SCF ubiquitin ligase complex WHB domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; SCF ubiquitin ligase complex WHB domain // 6.69999980926514 --- S0004695 // YTA12 SGDID:S0004695, Chr XIII from 448085-445608, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018785 // cdna:Genscan chromosome:SGD1:XIII:445608:448085:-1 // ensembl // 11 // --- /// GENEFINDER00000021963 // cdna:GeneFinder chromosome:SGD1:XIII:445608:448085:-1 // ensembl // 11 // --- /// YMR089C // cdna:known chromosome:SGD1:XIII:445608:448085:-1 gene:YMR089C // ensembl // 11 // --- --- No cerevisiae_gene -1.82026901436019 -1.30717518682189 1.14980958226843 -1.0013050881666 -1.02779888103581 Max fold change below threshold 4 1.82026901436019 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775465_at YPL233W.S1 Essential component of the MIND kinetochore complex (Mtw1p Including Nnf1p-Nsl1p-Dsn1p) which joins kinetochore subunits contacting DNA to those contacting microtubules; required for accurate chromosome segregation 1.81911210205662 166.104110717773 160.949157714844 NSL1 7059 // chromosome segregation // inferred from direct assay 776 // kinetochore // inferred from direct assay /// 818 // MIND complex // inferred from direct assay /// 922 // spindle pole // inferred from direct assay --- 156.254211425781 132.884124755859 199.324096679688 165.644104003906 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL233W /GEN=NSL1 /DB_XREF=GI:6325023 /SEG=NC_001148:+106172,106822 /DEF=Essential component of the MIND kinetochore complex (Mtw1p Including Nnf1p-Nsl1p-Dsn1p) which joins kinetochore subunits contacting DNA to those contacting microtubules; required for accurate chromosome segregation /NOTE=Nsl1p; go_component: MIND complex [goid GO:0000818] [evidence IDA] [pmid 14633972]; go_component: kinetochore [goid GO:0000776] [evidence IDA] [pmid 14657030]; go_component: spindle pole [goid GO:0000922] [evidence IDA] [pmid 12455957]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromosome segregation [goid GO:0007059] [evidence IDA] [pmid 12455957] --- --- --- --- --- --- S0006154 // NSL1 SGDID:S0006154, Chr XVI from 106172-106822, Verified ORF // sgd // 11 // --- /// GENSCAN00000017006 // cdna:Genscan chromosome:SGD1:XVI:106172:106822:1 // ensembl // 11 // --- /// GENEFINDER00000020932 // cdna:GeneFinder chromosome:SGD1:XVI:106172:106822:1 // ensembl // 11 // --- /// YPL233W // cdna:known chromosome:SGD1:XVI:106172:106822:1 gene:YPL233W // ensembl // 11 // --- --- No cerevisiae_gene 1.60272936002897 -1.17586816117319 1.81911210205662 1.27563983627004 1.06009369278719 Max fold change below threshold 4 1.81911210205662 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775241_at YFR041C.S1 Endoplasmic reticulum protein that may function as a cochaperone, as suggested by the presence of a DnaJ-like domain 1.81894600707555 277.434448242188 496.865921020508 ERJ5 --- 5783 // endoplasmic reticulum // inferred from direct assay --- 481.325042724609 264.617553710938 290.251342773438 512.406799316406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR041C /GEN=ERJ5 /DB_XREF=GI:14318566 /SEG=NC_001138:-237355,238242 /DEF=Endoplasmic reticulum protein that may function as a cochaperone, as suggested by the presence of a DnaJ-like domain /NOTE=Erj5p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.00000001686238E-16 S0001937 // span:7-29,132-154 // numtm:2 S0001937 // ERJ5 SGDID:S0001937, Chr VI from 238242-237355, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YFR041C // cdna:known chromosome:SGD1:VI:237355:238242:-1 gene:YFR041C // ensembl // 11 // --- --- No cerevisiae_gene 1.0059692903761 -1.81894600707555 1.43451314758587 -1.65830427561646 1.06457539881128 Max fold change below threshold 4 1.81894600707555 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769851_at YKL211C.S1 Bifunctional enzyme exhibiting both indole-3-glycerol-phosphate synthase and anthranilate synthase activities, forms multifunctional hetero-oligomeric anthranilate synthase:indole-3-glycerol phosphate synthase enzyme complex with Trp2p 1.81854369757843 546.435195922852 780.591918945313 TRP3 162 // tryptophan biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5950 // anthranilate synthase complex // inferred from physical interaction 4049 // anthranilate synthase activity // inferred from direct assay /// 4425 // indole-3-glycerol-phosphate synthase activity // inferred from genetic interaction /// 4425 // indole-3-glycerol-phosphate synthase activity // inferred from sequence similarity /// 4425 // indole-3-glycerol-phosphate synthase activity // inferred from direct assay 748.428161621094 481.684478759766 611.185913085938 812.755676269531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL211C /GEN=TRP3 /DB_XREF=GI:6322638 /SEG=NC_001143:-36700,38154 /DEF=anthranilate synthase Component II and indole-3-phosphate (multifunctional enzyme) /NOTE=Trp3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: anthranilate synthase activity [goid GO:0004049] [evidence IDA] [pmid 8001582]; go_function: indole-3-glycerol-phosphate synthase activity [goid GO:0004425] [evidence IDA] [pmid 3881257]; go_function: indole-3-glycerol-phosphate synthase activity [goid GO:0004425] [evidence IGI,ISS] [pmid 6323449]; go_process: tryptophan biosynthesis [goid GO:0000162] [evidence TAS] [pmid 3881257] --- --- --- --- --- --- S0001694 // TRP3 SGDID:S0001694, Chr XI from 38154-36700, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018261 // cdna:Genscan chromosome:SGD1:XI:36700:38154:-1 // ensembl // 11 // --- /// GENEFINDER00000022971 // cdna:GeneFinder chromosome:SGD1:XI:36700:38154:-1 // ensembl // 11 // --- /// YKL211C // cdna:known chromosome:SGD1:XI:36700:38154:-1 gene:YKL211C // ensembl // 11 // --- --- No cerevisiae_gene 1.81854369757843 -1.55377263462617 1.00374246253562 -1.2245507391396 1.08595015252914 Max fold change below threshold 4 1.81854369757843 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777358_at YPR041W.S1 Translation initiation factor eIF-5; N-terminal domain functions as a GTPase-activating protein to mediate hydrolysis of ribosome-bound GTP; C-terminal domain is the core of ribosomal preinitiation complex formation 1.81852403625022 1089.93206787109 1665.65972900391 TIF5 6446 // regulation of translational initiation // inferred from mutant phenotype /// 6446 // regulation of translational initiation // inferred from physical interaction /// 42256 // mature ribosome assembly // inferred from mutant phenotype 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // inferred from physical interaction 3743 // translation initiation factor activity // inferred from sequence similarity /// 5096 // GTPase activator activity // inferred from sequence similarity /// 5096 // GTPase activator activity // inferred from physical interaction 1676.17236328125 921.721313476563 1258.14282226563 1655.14709472656 0.00122069998178631 0.00415039015933871 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR041W /GEN=TIF5 /DB_XREF=GI:6325298 /SEG=NC_001148:+648699,649916 /DEF=eIF5 mediates hydrolysis of eIF2-GTP (SUI2,SUI3,GCD11) at start codons /NOTE=Tif5p; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence IPI] [pmid 9671501]; go_function: GTPase activator activity [goid GO:0005096] [evidence ISS] [pmid 11092890]; go_function: GTPase activator activity [goid GO:0005096] [evidence IPI] [pmid 9395514]; go_function: translation initiation factor activity [goid GO:0003743] [evidence ISS] [pmid 9395514]; go_process: mature ribosome assembly [goid GO:0042256] [evidence IMP] [pmid 11331597]; go_process: regulation of translational initiation [goid GO:0006446] [evidence IMP,IPI] [pmid 11331597] --- --- --- --- --- --- S0006245 // TIF5 SGDID:S0006245, Chr XVI from 648701-649918, Verified ORF // sgd // 10 // --- /// GENSCAN00000017218 // cdna:Genscan chromosome:SGD1:XVI:648752:649918:1 // ensembl // 10 // --- /// GENEFINDER00000020731 // cdna:GeneFinder chromosome:SGD1:XVI:648752:649918:1 // ensembl // 10 // --- /// YPR041W // cdna:known chromosome:SGD1:XVI:648701:649918:1 gene:YPR041W // ensembl // 10 // --- --- No cerevisiae_gene 1.38714580309199 -1.81852403625022 -1.03080260577262 -1.33225921065372 -1.01270296073483 Max fold change below threshold 4 1.81852403625022 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774961_at SPAPB1E7.12.S1 --- 1.81848884030023 --- --- --- --- 19.3151416778564 16.934642791748 12.6455907821655 10.6215343475342 0.0461426004767418 0.0239257998764515 0.0561522990465164 0.0561522990465164 P P M M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1E7.12 /GEN=rps602 /DEF=40S ribosomal protein S6 --- --- --- --- --- --- SPAPB1E7.12 // |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.4001529194691 -1.14056977258879 -1.40606006834459 -1.52742106008184 -1.81848884030023 Max fold change below threshold 4 1.81848884030023 Max fold change below threshold PAPMMM No 4 0 PPMM 0 2 2 No No 1 < x = 2
1774149_at YPL003W.S1 Protein that acts together with Uba3p to activate Rub1p before its conjugation to proteins (neddylation), which may play a role in protein degradation 1.81835698401721 753.346435546875 454.890960693359 ULA1 45116 // protein neddylation // inferred from direct assay --- 19781 // NEDD8 activating enzyme activity // inferred from direct assay 436.281219482422 713.377868652344 793.315002441406 473.500701904297 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL003W /GEN=ULA1 /DB_XREF=GI:6325254 /SEG=NC_001148:+552015,553403 /DEF=Protein that acts together with Uba3p to activate Rub1p before its conjugation to proteins (neddlyation), which may play a role in protein degradation /NOTE=Ula1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: NEDD8 activating enzyme activity [goid GO:0019781] [evidence IDA] [pmid 9545234]; go_process: protein neddylation [goid GO:0045116] [evidence IDA] [pmid 9545234] --- --- --- --- --- --- S0005924 // ULA1 SGDID:S0005924, Chr XVI from 552017-553405, Verified ORF // sgd // 11 // --- /// GENSCAN00000017182 // cdna:Genscan chromosome:SGD1:XVI:552017:553405:1 // ensembl // 11 // --- /// GENEFINDER00000020792 // cdna:GeneFinder chromosome:SGD1:XVI:552017:553405:1 // ensembl // 11 // --- /// YPL003W // cdna:known chromosome:SGD1:XVI:552017:553405:1 gene:YPL003W // ensembl // 11 // --- --- No cerevisiae_gene 1.59783039568306 1.63513311322145 -1.3228105158161 1.81835698401721 1.08531076003233 Max fold change below threshold 4 1.81835698401721 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776574_at YPR100W.S1 Mitochondrial ribosomal protein of the large subunit 1.81819523558234 1799.4873046875 1123.80261230469 MRPL51 6412 // protein biosynthesis // inferred from curator /// 9060 // aerobic respiration // inferred from mutant phenotype 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // inferred from physical interaction 1139.72009277344 2072.23364257813 1526.74096679688 1107.88513183594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR100W /GEN=MRPL51 /DB_XREF=GI:6325356 /SEG=NC_001148:+729787,730209 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl51p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IPI] [pmid 12392552]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 12392552]; go_process: protein biosynthesis [goid GO:0006412] [evidence IC] [pmid 12392552] --- --- --- --- --- --- S0006304 // MRPL51 SGDID:S0006304, Chr XVI from 729789-730211, Verified ORF // sgd // 11 // --- /// GENSCAN00000017257 // cdna:Genscan chromosome:SGD1:XVI:729789:730211:1 // ensembl // 11 // --- /// YPR100W // cdna:known chromosome:SGD1:XVI:729789:730211:1 gene:YPR100W // ensembl // 11 // --- YPR099C // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene -1.16803510590532 1.81819523558234 1.23178437688204 1.33957537159992 -1.02873489319668 Max fold change below threshold 4 1.81819523558234 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779422_at YJR062C.S1 Amidase, removes the amide group from N-terminal asparagine and glutamine residues to generate proteins with N-terminal aspartate and glutamate residues that are targets of ubiquitin-mediated degradation 1.81806017746375 382.042831420898 315.978866577148 NTA1 6464 // protein modification // inferred from mutant phenotype /// 30163 // protein catabolism // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 8418 // protein N-terminal asparagine amidohydrolase activity // inferred from direct assay /// 8418 // protein N-terminal asparagine amidohydrolase activity // inferred from mutant phenotype /// 8418 // protein N-terminal asparagine amidohydrolase activity // inferred from sequence similarity 290.294342041016 356.915802001953 407.169860839844 341.663391113281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR062C /GEN=NTA1 /DB_XREF=GI:6322522 /SEG=NC_001142:-553390,554763 /DEF=Amidase, removes the amide group from N-terminal asparagine and glutamine residues to generate proteins with N-terminal aspartate and glutamate residues that are targets of ubiquitin-mediated degradation /NOTE=Nta1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: protein N-terminal asparagine amidohydrolase activity [goid GO:0008418] [evidence IDA,IMP,ISS] [pmid 7744855]; go_process: protein catabolism [goid GO:0030163] [evidence IMP] [pmid 7744855]; go_process: protein modification [goid GO:0006464] [evidence IMP] [pmid 7744855] --- --- --- --- --- --- S0003823 // NTA1 SGDID:S0003823, Chr X from 554763-553390, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024182 // cdna:Genscan chromosome:SGD1:X:553390:554733:-1 // ensembl // 11 // --- /// GENEFINDER00000024538 // cdna:GeneFinder chromosome:SGD1:X:553390:554733:-1 // ensembl // 11 // --- /// YJR062C // cdna:known chromosome:SGD1:X:553390:554763:-1 gene:YJR062C // ensembl // 11 // --- --- No cerevisiae_gene 1.15464408693317 1.22949623989407 1.81806017746375 1.40261039184262 1.17695504745665 Max fold change below threshold 4 1.81806017746375 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775744_at YBR006W.S1 Succinate semialdehyde dehydrogenase involved in the utilization of gamma-aminobutyrate (GABA) as a nitrogen source; part of the 4-aminobutyrate and glutamate degradation pathways; localized to the cytoplasm 1.81770898760763 1861.28369140625 1207.15710449219 UGA2 6538 // glutamate catabolism // inferred from mutant phenotype /// 6538 // glutamate catabolism // inferred from sequence similarity /// 6538 // glutamate catabolism // inferred from expression pattern /// 6979 // response to oxidative stress // inferred from mutant phenotype /// 6979 // response to oxidative stress // inferred from genetic interaction /// 6979 // response to oxidative stress // inferred from expression pattern 5737 // cytoplasm // inferred from direct assay 9013 // succinate-semialdehyde dehydrogenase [NAD(P)+] activity // inferred from mutant phenotype /// 9013 // succinate-semialdehyde dehydrogenase [NAD(P)+] activity // inferred from sequence similarity 1157.83325195313 1724.74792480469 1997.81945800781 1256.48095703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR006W /GEN=UGA2 /DB_XREF=GI:6319478 /SEG=NC_001134:+246974,248467 /DEF=involved in utilization of GABA as a nitrogen source /NOTE=Uga2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: succinate-semialdehyde dehydrogenase [NAD(P)+] activity [goid GO:0009013] [evidence IMP,ISS] [pmid 11031268]; go_process: glutamate catabolism [goid GO:0006538] [evidence IEP,IMP,ISS] [pmid 11031268]; go_process: response to oxidative stress [goid GO:0006979] [evidence IEP,IGI,IMP] [pmid 11031268] --- --- --- --- --- --- S0000210 // UGA2 SGDID:S0000210, Chr II from 247012-248505, Verified ORF // sgd // 11 // --- /// GENSCAN00000021143 // cdna:Genscan chromosome:SGD1:II:247012:248505:1 // ensembl // 11 // --- /// GENEFINDER00000022333 // cdna:GeneFinder chromosome:SGD1:II:247012:248505:1 // ensembl // 11 // --- /// YBR006W // cdna:known chromosome:SGD1:II:247012:248505:1 gene:YBR006W // ensembl // 11 // --- --- No cerevisiae_gene -1.81770898760763 1.48963412641263 1.19300999370583 1.72548115597624 1.08520026947898 Max fold change below threshold 4 1.81770898760763 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775278_at YGR163W.S1 Cytoplasmic GTP binding protein, negative regulator of the Ran/Tc4 GTPase cycle downstream of Gtr1p; homolog of human RagC and RagD proteins; component of the EGO complex, which is involved in the regulation of microautophagy 1.81744844619187 667.095703125 920.272094726563 GTR2 16237 // microautophagy // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5774 // vacuolar membrane // inferred from direct assay 3924 // GTPase activity // inferred from sequence similarity 848.473876953125 466.848937988281 867.342468261719 992.0703125 0.00415039015933871 0.0239257998764515 0.00585938012227416 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR163W /GEN=GTR2 /DB_XREF=GI:6321602 /SEG=NC_001139:+827555,828580 /DEF=Cytoplasmic GTP binding protein, functions as a negative regulator of the Ran/Tc4 GTPase cycle downstream of its binding partner and homolog Gtr1p; homolog of human RagC and RagD proteins /NOTE=Gtr2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11073942]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11073942]; go_function: GTPase activity [goid GO:0003924] [evidence ISS] [pmid 10388807]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003395 // GTR2 SGDID:S0003395, Chr VII from 827557-828582, Verified ORF // sgd // 11 // --- /// GENSCAN00000019469 // cdna:Genscan chromosome:SGD1:VII:827557:828582:1 // ensembl // 11 // --- /// YGR163W // cdna:known chromosome:SGD1:VII:827557:828582:1 gene:YGR163W // ensembl // 11 // --- --- No cerevisiae_gene -1.33449323388677 -1.81744844619187 1.21091464483135 1.02223827017085 1.16924084458856 Max fold change below threshold 4 1.81744844619187 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1778185_at YDR536W.S1 Glycerol proton symporter of the plasma membrane, subject to glucose-induced inactivation, strongly but transiently induced when cells are subjected to osmotic shock 1.8174405334703 5794.7783203125 6469.65478515625 STL1 6810 // transport // inferred from sequence similarity /// 15793 // glycerol transport // inferred from mutant phenotype 5886 // plasma membrane // traceable author statement /// 16020 // membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity 7678.13427734375 7364.8603515625 4224.6962890625 5261.17529296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR536W /GEN=STL1 /DB_XREF=GI:6320745 /SEG=NC_001136:+1507992,1509701 /DEF=sugar transporter-like protein /NOTE=Stl1p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 8076821]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 8076821]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 8076821] --- --- --- --- --- S0002944 // span:27-49,75-97,110-132,137-158,170-189,199-221,328-350,360-379,388-410,425-447,452-474 // numtm:11 S0002944 // STL1 SGDID:S0002944, Chr IV from 1507994-1509703, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023479 // cdna:GeneFinder chromosome:SGD1:IV:1507994:1509703:1 // ensembl // 10 // --- /// GENSCAN00000025517 // cdna:Genscan chromosome:SGD1:IV:1507994:1509703:1 // ensembl // 11 // --- /// YDR536W // cdna:known chromosome:SGD1:IV:1507994:1509703:1 gene:YDR536W // ensembl // 11 // --- --- No cerevisiae_gene -1.62203758116084 -1.04253630222802 -1.3949958770633 -1.8174405334703 -1.45939525862313 Max fold change below threshold 4 1.8174405334703 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773395_at YIL164C.S1 Nitrilase, member of the widely found nitrilase branch (EC:3.5.5.1) of the nitrilase superfamily 1.81743094711694 908.065795898438 1038.9423828125 NIT1 --- --- 257 // nitrilase activity // inferred from sequence similarity 990.637451171875 565.807006835938 1250.32458496094 1087.24731445313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL164C /GEN=NIT1 /DB_XREF=GI:6322027 /SEG=NC_001141:-34087,34686 /DEF=Nitrilase, member of the widely found nitrilase branch (EC:3.5.5.1) of the nitrilase superfamily /NOTE=Nit1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_function: nitrilase activity [goid GO:0000257] [evidence ISS] [pmid 11380987] --- --- --- --- --- --- S0001426 // NIT1 SGDID:S0001426, Chr IX from 34686-34087, reverse complement, Verified ORF // sgd // 11 // --- /// X66132 // S.cerevisiae orf-1 and orf-2 mRNA. // gb // 9 // --- /// GENSCAN00000016351 // cdna:Genscan chromosome:SGD1:IX:34087:34686:-1 // ensembl // 11 // --- /// GENEFINDER00000019036 // cdna:GeneFinder chromosome:SGD1:IX:34087:34686:-1 // ensembl // 11 // --- /// YIL164C // cdna:known chromosome:SGD1:IX:34087:34686:-1 gene:YIL164C // ensembl // 11 // --- --- No cerevisiae_gene 1.81743094711694 -1.75083984327384 1.35455538191924 1.26214144587595 1.09752292644192 Max fold change below threshold 4 1.81743094711694 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771712_at YER066W.S1 Hypothetical protein 1.81731880700176 1605.75823974609 918.694854736328 --- --- --- --- 923.610107421875 1533.0224609375 1678.49401855469 913.779602050781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER066W /GEN=ICL1 /DB_XREF=GI:6320909 /SEG=NC_001137:+290240,290797 /DEF=Hypothetical ORF /NOTE=Yer066wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000868 // YER066W SGDID:S0000868, Chr V from 290240-290797, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016860 // cdna:Genscan chromosome:SGD1:V:290240:290797:1 // ensembl // 11 // --- /// YER066W // cdna:known chromosome:SGD1:V:290240:290797:1 gene:YER066W // ensembl // 11 // --- --- No cerevisiae_gene -1.30665603779421 1.65981559601671 1.22773926299203 1.81731880700176 -1.0107580704899 Max fold change below threshold 4 1.81731880700176 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778152_at SPAC22A12.13.S1 --- 1.81715266206727 --- --- --- --- 4.22740745544434 7.55635929107666 5.76865768432617 7.00948667526245 0.129638999700546 0.24609400331974 0.111571997404099 0.030273400247097 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22A12.13 /DEF=phosphatidylinositol N-acetylglucosaminyltransferase complex (predicted) --- --- --- --- --- --- SPAC22A12.13 // |||pig-P |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.81715266206727 1.78746888505982 1.01207566485696 1.36458520857669 1.65810529246126 Max fold change below threshold 4 1.81715266206727 Max fold change below threshold APAPAP No 4 0 AAAP 3 1 0 No No x = 1
1778548_at YOL054W.S1 Nuclear protein, putative RNA polymerase II elongation factor; isolated as Pob3p/Spt16p-binding protein 1.81687173705319 517.900482177734 899.940551757813 --- 6368 // RNA elongation from RNA polymerase II promoter // inferred from physical interaction 5634 // nucleus // inferred from direct assay --- 838.4873046875 461.500549316406 574.300415039063 961.393798828125 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL054W /GEN=THI20 /DB_XREF=GI:6324518 /SEG=NC_001147:+228612,229832 /DEF=Pob3/Spt16 Histone associated /NOTE=Yol054wp --- --- --- --- --- --- S0005415 // PSH1 SGDID:S0005415, Chr XV from 228612-229832, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017426 // cdna:Genscan chromosome:SGD1:XV:228612:229832:1 // ensembl // 11 // --- /// GENEFINDER00000022859 // cdna:GeneFinder chromosome:SGD1:XV:228732:229832:1 // ensembl // 11 // --- /// YOL054W // cdna:known chromosome:SGD1:XV:228612:229832:1 gene:YOL054W // ensembl // 11 // --- --- No cerevisiae_gene -1.08916608539335 -1.81687173705319 -1.17099938388983 -1.46001514665538 1.14658122246279 Max fold change below threshold 4 1.81687173705319 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770236_at YMR088C.S1 Permease of basic amino acids in the vacuolar membrane 1.81673737135003 1641.83062744141 1632.35040283203 VBA1 15802 // basic amino acid transport // inferred from mutant phenotype 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay 5286 // basic amino acid permease activity // inferred from direct assay /// 5286 // basic amino acid permease activity // inferred from mutant phenotype 1621.890625 1662.51025390625 1621.15100097656 1642.81018066406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR088C /GEN=ADH3 /DB_XREF=GI:6323735 /SEG=NC_001145:-443413,445101 /DEF=Hypothetical ORF /NOTE=Ymr088cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004694 // span:102-124,128-150,163-182,186-208,229-251,261-280,293-315,330-352,364-386,415-437,449-471,530-552 // numtm:12 S0004694 // YMR088C SGDID:S0004694, Chr XIII from 445101-443413, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018784 // cdna:Genscan chromosome:SGD1:XIII:443413:444501:-1 // ensembl // 11 // --- /// YMR088C // cdna:known chromosome:SGD1:XIII:443413:445101:-1 gene:YMR088C // ensembl // 11 // --- --- No cerevisiae_gene -1.81673737135003 1.02504461662219 -1.01822829034033 -1.00045623388752 1.01289825302743 Max fold change below threshold 4 1.81673737135003 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778988_at YDL100C.S1 ATPase, involved in resistance to heat and metal stress, active as a dimer; normally localized to the cytosol, but appears to localize to late endosomes under stress conditions 1.81643731934574 1540.04162597656 1037.07122802734 ARR4 9408 // response to heat // inferred from mutant phenotype /// 10038 // response to metal ion // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay 16887 // ATPase activity // inferred from direct assay 989.622924804688 1282.49523925781 1797.58801269531 1084.51953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL100C /GEN=ARR4 /DB_XREF=GI:6320103 /SEG=NC_001136:-282112,283176 /DEF=ATPase, involved in resistance to heat and metal stress, active as a dimer; normally localized to the cytosol, but appears to localize to late endosomes under stress conditions /NOTE=Arr4p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 12680698]; go_process: response to heat [goid GO:0009408] [evidence IMP] [pmid 12680698]; go_process: response to metal ion [goid GO:0010038] [evidence IMP] [pmid 12680698] --- --- --- --- --- --- S0002258 // ARR4 SGDID:S0002258, Chr IV from 283176-282112, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023924 // cdna:GeneFinder chromosome:SGD1:IV:282112:283176:-1 // ensembl // 11 // --- /// GENSCAN00000025025 // cdna:Genscan chromosome:SGD1:IV:282112:283176:-1 // ensembl // 11 // --- /// YDL100C // cdna:known chromosome:SGD1:IV:282112:283176:-1 gene:YDL100C // ensembl // 11 // --- --- No cerevisiae_gene 1.40277397618919 1.29594334075368 1.06491779749108 1.81643731934574 1.09589168163626 Max fold change below threshold 4 1.81643731934574 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770082_at YDR454C.S1 Guanylate kinase, converts GMP to GDP; required for growth and mannose outer chain elongation of cell wall N-linked glycoproteins 1.81638895509099 1283.37213134766 1976.35302734375 GUK1 46037 // GMP metabolism // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4385 // guanylate kinase activity // inferred from direct assay 1972.33410644531 1085.8544921875 1480.88977050781 1980.37194824219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR454C /GEN=GUK1 /DB_XREF=GI:6320662 /SEG=NC_001136:-1366252,1366815 /DEF=Guanylate kinase, converts GMP to GDP; required for growth and mannose outer chain elongation of cell wall N-linked glycoproteins /NOTE=Guk1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: guanylate kinase activity [goid GO:0004385] [evidence IDA] [pmid 1334480]; go_process: GMP metabolism [goid GO:0046037] [evidence TAS] [pmid 11035032] --- --- --- --- --- --- S0002862 // GUK1 SGDID:S0002862, Chr IV from 1366817-1366254, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023683 // cdna:GeneFinder chromosome:SGD1:IV:1366254:1366817:-1 // ensembl // 11 // --- /// GENSCAN00000025455 // cdna:Genscan chromosome:SGD1:IV:1366254:1366817:-1 // ensembl // 11 // --- /// YDR454C // cdna:known chromosome:SGD1:IV:1366254:1366817:-1 gene:YDR454C // ensembl // 11 // --- --- No cerevisiae_gene 1.09262286087437 -1.81638895509099 1.1136687482566 -1.33185747226073 1.00407529422658 Max fold change below threshold 4 1.81638895509099 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778405_at YNL258C.S1 Endoplasmic reticulum (ER)-localized peripheral membrane protein required for Golgi-to-ER retrograde traffic; component of the ER target site that interacts with coatomer, the major component of the COPI vesicle protein coat 1.81637019770353 611.698364257813 355.246383666992 DSL1 6890 // retrograde transport, Golgi to ER // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay --- 353.485107421875 581.3369140625 642.059814453125 357.007659912109 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL258C /GEN=DSL1 /DB_XREF=GI:6324071 /SEG=NC_001146:-158108,160372 /DEF=Endoplasmic reticulum (ER)-localized peripheral membrane protein required for Golgi-to-ER retrograde traffic; component of the ER target site that interacts with coatomer, the major component of the COPI vesicle protein coat /NOTE=Dsl1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11739780]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: retrograde transport, Golgi to ER [goid GO:0006890] [evidence IMP] [pmid 11739780] --- --- --- --- --- --- S0005202 // DSL1 SGDID:S0005202, Chr XIV from 160372-158108, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000019834 // cdna:Genscan chromosome:SGD1:XIV:158108:158773:-1 // ensembl // 10 // --- /// GENEFINDER00000020585 // cdna:GeneFinder chromosome:SGD1:XIV:158108:159826:-1 // ensembl // 10 // --- /// YNL258C // cdna:known chromosome:SGD1:XIV:158108:160372:-1 gene:YNL258C // ensembl // 10 // --- --- No cerevisiae_gene 1.18132452732453 1.64458672192006 1.1497624967625 1.81637019770353 1.00996520763187 Max fold change below threshold 4 1.81637019770353 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774124_at SPCC794.08.S1 --- 1.81635240690604 --- --- --- --- 5.90321493148804 9.25293254852295 9.88067245483398 6.74351406097412 0.303710997104645 0.398925989866257 0.366210997104645 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC794.08 /DEF=hypothetical protein --- --- --- --- --- --- SPCC794.08 // |||hypothetical protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.31989693665125 1.56743954877322 1.81635240690604 1.67377819874557 1.14234601640606 Max fold change below threshold 4 1.81635240690604 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779031_at YER081W.S1 3-phosphoglycerate dehydrogenase, catalyzes the first step in serine and glycine biosynthesis; isozyme of Ser33p 1.81621790520301 1480.98413085938 1223.64416503906 SER3 9070 // serine family amino acid biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4617 // phosphoglycerate dehydrogenase activity // inferred from mutant phenotype 1200.14379882813 1537.71655273438 1424.25170898438 1247.14453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER081W /GEN=SER3 /DB_XREF=GI:6320925 /SEG=NC_001137:+322682,324091 /DEF=3-phosphoglycerate dehydrogenase, catalyzes the first step in serine and glycine biosynthesis; isozyme of Ser33p /NOTE=Ser3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: phosphoglycerate dehydrogenase activity [goid GO:0004617] [evidence IMP] [pmid 12525494]; go_process: serine family amino acid biosynthesis [goid GO:0009070] [evidence IMP] [pmid 12525494] --- --- --- --- --- --- S0000883 // SER3 SGDID:S0000883, Chr V from 322682-324091, Verified ORF // sgd // 11 // --- /// GENSCAN00000016870 // cdna:Genscan chromosome:SGD1:V:322682:324091:1 // ensembl // 11 // --- /// GENEFINDER00000019586 // cdna:GeneFinder chromosome:SGD1:V:322682:324091:1 // ensembl // 11 // --- /// YER081W // cdna:known chromosome:SGD1:V:322682:324091:1 gene:YER081W // ensembl // 11 // --- --- No cerevisiae_gene 1.81621790520301 1.28127692217872 1.24356975045105 1.1867342149958 1.03916258407348 Max fold change below threshold 4 1.81621790520301 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774080_at YMR278W.S1 Hypothetical protein 1.8161972673639 677.965911865234 686.016479492188 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 648.318542480469 570.073791503906 785.858032226563 723.714416503906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR278W /GEN=FCP1 /DB_XREF=GI:6323934 /SEG=NC_001145:+822762,824630 /DEF=Hypothetical ORF /NOTE=Ymr278wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004891 // YMR278W SGDID:S0004891, Chr XIII from 822762-824630, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018947 // cdna:Genscan chromosome:SGD1:XIII:822762:824630:1 // ensembl // 11 // --- /// GENEFINDER00000021871 // cdna:GeneFinder chromosome:SGD1:XIII:822951:824630:1 // ensembl // 11 // --- /// YMR278W // cdna:known chromosome:SGD1:XIII:822762:824630:1 gene:YMR278W // ensembl // 11 // --- --- No cerevisiae_gene -1.78827239355542 -1.13725372424181 1.8161972673639 1.21214801171638 1.11629448964235 Max fold change below threshold 4 1.8161972673639 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770816_at YML065W.S1 Largest subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing; may be phosphorylated by Cdc28p 1.81577086485951 230.467178344727 258.12287902832 ORC1 6267 // pre-replicative complex formation and maintenance // traceable author statement /// 6270 // DNA replication initiation // traceable author statement /// 30466 // chromatin silencing at silent mating-type cassette // traceable author statement 5656 // pre-replicative complex // traceable author statement /// 5664 // nuclear origin of replication recognition complex // traceable author statement 3688 // DNA replication origin binding // traceable author statement /// 16887 // ATPase activity // traceable author statement 256.950805664063 191.476043701172 269.458312988281 259.294952392578 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML065W /GEN=ORC1 /DB_XREF=GI:6323575 /SEG=NC_001145:+142210,144954 /DEF=Largest subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing; may be phosphorylated by Cdc28p /NOTE=Orc1p; go_component: nuclear origin of replication recognition complex [goid GO:0005664] [evidence TAS] [pmid 9442876]; go_function: ATPase activity [goid GO:0016887] [evidence TAS] [pmid 9442876]; go_function: DNA replication origin binding [goid GO:0003688] [evidence TAS] [pmid 9442876]; go_process: DNA replication initiation [goid GO:0006270] [evidence TAS] [pmid 9442876]; go_process: chromatin silencing at silent mating-type cassette (sensu Fungi) [goid GO:0030466] [evidence TAS] [pmid 9442876]; go_process: pre-replicative complex formation and maintenance [goid GO:0006267] [evidence TAS] [pmid 9442876] --- --- --- --- --- --- S0004530 // ORC1 SGDID:S0004530, Chr XIII from 142210-144954, Verified ORF // sgd // 10 // --- /// GENSCAN00000018662 // cdna:Genscan chromosome:SGD1:XIII:142210:144954:1 // ensembl // 10 // --- /// GENEFINDER00000021984 // cdna:GeneFinder chromosome:SGD1:XIII:142210:144954:1 // ensembl // 10 // --- /// YML065W // cdna:known chromosome:SGD1:XIII:142210:144954:1 gene:YML065W // ensembl // 10 // --- --- No cerevisiae_gene -1.81577086485951 -1.3419475392184 -1.08915198151339 1.04867666124609 1.00912293978786 Max fold change below threshold 4 1.81577086485951 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sp-GPD3-M_at AFFX-r2-Sp-GPD3-M --- 1.81557545251446 --- --- --- --- 13.4332590103149 10.012110710144 7.51067781448364 24.3890953063965 0.567627012729645 0.567627012729645 0.533936023712158 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=GPD3 glyceraldehyde 3-phosphate dehydrogenase (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPBC354.12 // |gpd3||glyceraldehyde 3-phosphate dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- AFFX_control No 1.27402454373708 -1.34170100583333 1.42324581938695 -1.78855482049971 1.81557545251446 Max fold change below threshold 4 1.81557545251446 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775160_at YPL001W.S1 Catalytic subunit of the Hat1p-Hat2p histone acetyltransferase complex that uses the cofactor acetyl coenzyme A, to acetylate free nuclear and cytoplasmic histone H4; involved in telomeric silencing and DNA double-strand break repair 1.81540148397503 448.56706237793 762.279846191406 HAT1 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 16573 // histone acetylation // inferred from direct assay 123 // histone acetyltransferase complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4406 // H3/H4 histone acetyltransferase activity // inferred from mutant phenotype 743.365356445313 487.657012939453 409.477111816406 781.1943359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL001W /GEN=HAT1 /DB_XREF=GI:6325256 /SEG=NC_001148:+554600,555724 /DEF=Catalytic subunit of the Hat1p-Hat2p histone acetyltransferase complex that uses the cofactor acetyl coenzyme A, to acetylate free nuclear and cytoplasmic histone H4; involved in telomeric silencing and DNA double-strand break repair /NOTE=Hat1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9575221]; go_component: histone acetyltransferase complex [goid GO:0000123] [evidence IPI] [pmid 14761951]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9575221]; go_function: H3/H4 histone acetyltransferase activity [goid GO:0004406] [evidence IMP] [pmid 9575221]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 10982821]; go_process: histone acetylation [goid GO:0016573] [evidence IDA] [pmid 9575221] --- --- --- --- scop // a.2.4.Theta subunit of DNA polymerase III // All alpha proteins; Long alpha-hairpin; Theta subunit of DNA polymerase III; Theta subunit of DNA polymerase III // 9.5 --- S0005922 // HAT1 SGDID:S0005922, Chr XVI from 554602-555726, Verified ORF // sgd // 11 // --- /// GENSCAN00000017184 // cdna:Genscan chromosome:SGD1:XVI:554602:555726:1 // ensembl // 11 // --- /// GENEFINDER00000020841 // cdna:GeneFinder chromosome:SGD1:XVI:554602:555726:1 // ensembl // 11 // --- /// YPL001W // cdna:known chromosome:SGD1:XVI:554602:555726:1 gene:YPL001W // ensembl // 11 // --- --- No cerevisiae_gene 1.34661981339154 -1.52436105033028 1.06720888182554 -1.81540148397503 1.05088881148979 Max fold change below threshold 4 1.81540148397503 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780031_at YMR238W.S1 Mannosidase, essential glycosylphosphatidylinositol (GPI)-anchored membrane protein required for cell wall biogenesis, involved in filamentous growth, homologous to Dcw1p 1.81507119176475 1222.85485839844 2007.71649169922 DFG5 7124 // pseudohyphal growth // inferred from mutant phenotype /// 9272 // cell wall biosynthesis (sensu Fungi) // inferred from direct assay 46658 // anchored to plasma membrane // inferred from direct assay --- 2055.4052734375 1132.41027832031 1313.29943847656 1960.02770996094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR238W /GEN=DFG5 /DB_XREF=GI:6323894 /SEG=NC_001145:+746352,747728 /DEF=Mannosidase, essential glycosylphosphatidylinositol (GPI)-anchored membrane protein required for cell wall biogenesis, involved in filamentous growth, homologous to Dcw1p /NOTE=Dfg5p; go_component: extrinsic to plasma membrane, GPI-anchored [goid GO:0046658] [evidence IDA] [pmid 12421307]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall biosynthesis (sensu Fungi) [goid GO:0009272] [evidence IDA] [pmid 12421307]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 9055077] --- --- --- --- --- S0004851 // span:435-457 // numtm:1 S0004851 // DFG5 SGDID:S0004851, Chr XIII from 746352-747728, Verified ORF // sgd // 11 // --- /// GENSCAN00000018915 // cdna:Genscan chromosome:SGD1:XIII:746352:747728:1 // ensembl // 11 // --- /// GENEFINDER00000021920 // cdna:GeneFinder chromosome:SGD1:XIII:746352:747728:1 // ensembl // 11 // --- /// YMR238W // cdna:known chromosome:SGD1:XIII:746352:747728:1 gene:YMR238W // ensembl // 11 // --- --- No cerevisiae_gene -1.23713164157547 -1.81507119176475 -1.18151880349563 -1.56506978775669 -1.04866133422086 Max fold change below threshold 4 1.81507119176475 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779365_at YML104C.S1 Intermediate filament protein, required for nuclear and mitochondrial transmission to daughter buds 1.813460675788 202.400382995605 168.709671020508 MDM1 1 // mitochondrion inheritance // inferred from direct assay /// 7005 // mitochondrion organization and biogenesis // traceable author statement /// 7097 // nuclear migration // traceable author statement 5737 // cytoplasm // traceable author statement /// 5882 // intermediate filament // traceable author statement 5200 // structural constituent of cytoskeleton // traceable author statement 148.033203125 162.376770019531 242.42399597168 189.386138916016 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML104C /GEN=MDM1 /DB_XREF=GI:6323532 /SEG=NC_001145:-58939,62322 /DEF=Required for nuclear and mitochondrial transmission to daughter buds. /NOTE=Mdm1p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 9245780]; go_component: intermediate filament [goid GO:0005882] [evidence TAS] [pmid 9891785]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence TAS] [pmid 9891785]; go_process: mitochondrion inheritance [goid GO:0000001] [evidence IDA] [pmid 9245780]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence TAS] [pmid 9891785]; go_process: nuclear migration [goid GO:0007097] [evidence TAS] [pmid 9891785] --- --- --- --- --- S0004572 // span:9-43 // numtm:1 S0004572 // MDM1 SGDID:S0004572, Chr XIII from 62322-58939, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018630 // cdna:Genscan chromosome:SGD1:XIII:58939:62268:-1 // ensembl // 11 // --- /// YML104C // cdna:known chromosome:SGD1:XIII:58939:62322:-1 gene:YML104C // ensembl // 11 // --- --- No cerevisiae_gene 1.57978917495679 1.09689425474648 1.813460675788 1.63763257738182 1.27934905763065 Max fold change below threshold 4 1.813460675788 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776937_at YOR311C.S1 Endoplasmic reticulum (ER)-resident membrane protein, overproduction induces enlargement of ER-like membrane structures and suppresses a temperature-sensitive sly1 mutation 1.81339703853783 755.511505126953 1326.99102783203 HSD1 --- 16021 // integral to membrane // inferred from sequence similarity /// 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay --- 1291.09143066406 711.973937988281 799.049072265625 1362.890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR311C /GEN=HSD1 /DB_XREF=GI:6324887 /SEG=NC_001147:-899051,899923 /DEF=ER membrane protein /NOTE=Hsd1p; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA] [pmid 11481671]; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 11481671]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005838 // span:78-95,100-122,143-162,200-222 // numtm:4 S0005838 // HSD1 SGDID:S0005838, Chr XV from 899923-899051, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017766 // cdna:Genscan chromosome:SGD1:XV:899051:899923:-1 // ensembl // 11 // --- /// GENEFINDER00000022877 // cdna:GeneFinder chromosome:SGD1:XV:899051:899923:-1 // ensembl // 11 // --- /// YOR311C // cdna:known chromosome:SGD1:XV:899051:899923:-1 gene:YOR311C // ensembl // 11 // --- --- No cerevisiae_gene 1.26354910514426 -1.81339703853783 -1.21555755659234 -1.61578490668076 1.05561123916608 Max fold change below threshold 4 1.81339703853783 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769772_at SPAC10F6.11c.S1 --- 1.81321462806583 --- --- --- --- 8.0238676071167 11.6286725997925 9.27624797821045 7.76714754104614 0.149657994508743 0.274170011281967 0.111571997404099 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC10F6.11c /DEF=kinase activator (predicted) --- --- --- --- --- --- SPAC10F6.11c // |||kinase activator |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.81321462806583 1.44926027810809 1.09757090722381 1.15608188375179 -1.03305203933798 Max fold change below threshold 4 1.81321462806583 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769746_at YGR083C.S1 Delta subunit of the translation initiation factor eIF2B, the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression 1.81305425770312 497.103759765625 876.196746826172 GCD2 6413 // translational initiation // traceable author statement 5840 // ribosome // traceable author statement /// 5851 // eukaryotic translation initiation factor 2B complex // inferred from direct assay 3743 // translation initiation factor activity // traceable author statement /// 30234 // enzyme regulator activity // inferred from genetic interaction /// 30234 // enzyme regulator activity // inferred from mutant phenotype 831.086853027344 458.390502929688 535.817016601563 921.306640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR083C /GEN=GCD2 /DB_XREF=GI:6321520 /SEG=NC_001139:-644862,646817 /DEF=Delta subunit of the translation initiation factor eIF2B, the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression /NOTE=Gcd2p; go_component: eukaryotic translation initiation factor 2B complex [goid GO:0005851] [evidence IDA] [pmid 8336705]; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 9841679]; go_function: translation initiation factor activity [goid GO:0003743] [evidence TAS] [pmid 9841679]; go_process: translational initiation [goid GO:0006413] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0003315 // GCD2 SGDID:S0003315, Chr VII from 646819-644864, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019402 // cdna:Genscan chromosome:SGD1:VII:644864:646393:-1 // ensembl // 11 // --- /// GENEFINDER00000021556 // cdna:GeneFinder chromosome:SGD1:VII:644864:646819:-1 // ensembl // 11 // --- /// YGR083C // cdna:known chromosome:SGD1:VII:644864:646819:-1 gene:YGR083C // ensembl // 11 // --- --- No cerevisiae_gene -1.13621986205009 -1.81305425770312 -1.18193283850202 -1.55106468678158 1.1085563888648 Max fold change below threshold 4 1.81305425770312 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773344_at YER144C.S1 Putative ubiquitin-specific protease that does not associate with the proteasome 1.81265040712695 1556.83831787109 1523.59509277344 UBP5 16579 // protein deubiquitination // traceable author statement 5737 // cytoplasm // inferred from curator 4843 // ubiquitin-specific protease activity // traceable author statement 1530.68115234375 1662.146484375 1451.53015136719 1516.50903320313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER144C /GEN=UBP5 /DB_XREF=GI:6320992 /SEG=NC_001137:-457801,460218 /DEF=Putative ubiquitin-specific protease that does not associate with the proteasome /NOTE=Ubp5p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 8982460]; go_function: ubiquitin-specific protease activity [goid GO:0004843] [evidence TAS] [pmid 8982460]; go_process: protein deubiquitination [goid GO:0016579] [evidence TAS] [pmid 8982460] --- --- --- --- --- --- S0000946 // UBP5 SGDID:S0000946, Chr V from 460218-457801, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016923 // cdna:Genscan chromosome:SGD1:V:457801:460218:-1 // ensembl // 11 // --- /// YER144C // cdna:known chromosome:SGD1:V:457801:460218:-1 gene:YER144C // ensembl // 11 // --- --- No cerevisiae_gene -1.81265040712695 1.08588681700951 -1.11166234183023 -1.05452935366311 -1.00934522566654 Max fold change below threshold 4 1.81265040712695 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771392_at YLR214W.S1 Ferric reductase and cupric reductase, reduces siderophore-bound iron and oxidized copper prior to uptake by transporters; expression induced by low copper and iron levels 1.81236091603455 972.423797607422 769.333251953125 FRE1 6826 // iron ion transport // inferred from direct assay /// 15677 // copper ion import // inferred from direct assay 5886 // plasma membrane // inferred from direct assay 293 // ferric-chelate reductase activity // inferred from direct assay 705.539794921875 1033.93420410156 910.913391113281 833.126708984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR214W /GEN=FRE1 /DB_XREF=GI:6323243 /SEG=NC_001144:+568569,570629 /DEF=Ferric reductase and cupric reductase, reduces siderophore-bound iron and oxdized copper prior to uptake by transporters; expression induced by low copper and iron levels /NOTE=Fre1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 8164662]; go_function: ferric-chelate reductase activity [goid GO:0000293] [evidence IDA] [pmid 8164662]; go_process: copper ion import [goid GO:0015677] [evidence IDA] [pmid 7814363]; go_process: iron ion transport [goid GO:0006826] [evidence IDA] [pmid 8164662] --- --- --- --- --- S0004204 // span:7-29,147-169,214-236,260-279,292-314,329-346,367-389 // numtm:7 S0004204 // FRE1 SGDID:S0004204, Chr XII from 568569-570629, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024635 // cdna:GeneFinder chromosome:SGD1:XII:569100:570629:1 // ensembl // 11 // --- /// GENSCAN00000017985 // cdna:Genscan chromosome:SGD1:XII:569790:570629:1 // ensembl // 11 // --- /// YLR214W // cdna:known chromosome:SGD1:XII:568569:570629:1 gene:YLR214W // ensembl // 11 // --- --- No cerevisiae_gene 1.81236091603455 1.46545129210756 1.54428160093235 1.29108718979366 1.18083588619778 Max fold change below threshold 4 1.81236091603455 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779248_at SPAC26A3.05.S1 --- 1.81193105042281 --- --- --- --- 5.60531997680664 8.20346164703369 7.80446720123291 3.11793971061707 0.129638999700546 0.030273400247097 0.129638999700546 0.0561522990465164 A P A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC26A3.05 /GEN=chc1 /DEF=clathrin heavy chain (predicted) --- --- --- --- --- --- SPAC26A3.05 // |chc1||clathrin heavy chain |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.81193105042281 1.46351353374606 1.27685311906008 1.39233214758939 -1.79776406763725 Max fold change below threshold 4 1.81193105042281 Max fold change below threshold AAPAAM No 4 0 APAM 2 1 1 No No x = 1
1770571_at YNR043W.S1 Mevalonate pyrophosphate decarboxylase, essential enzyme involved in the biosynthesis of isoprenoids and sterols, including ergosterol; acts as a homodimer 1.81188381397883 2493.82165527344 1617.38897705078 MVD1 6696 // ergosterol biosynthesis // traceable author statement /// 8299 // isoprenoid biosynthesis // traceable author statement 5829 // cytosol // traceable author statement 4163 // diphosphomevalonate decarboxylase activity // traceable author statement 1555.728515625 2168.84399414063 2818.79931640625 1679.04943847656 0.000732421991415322 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR043W /GEN=MVD1 /DB_XREF=GI:6324371 /SEG=NC_001146:+701894,703084 /DEF=involved in the polyisoprene biosynthesis pathway /NOTE=Mvd1p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: diphosphomevalonate decarboxylase activity [goid GO:0004163] [evidence TAS]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence TAS]; go_process: isoprenoid biosynthesis [goid GO:0008299] [evidence TAS] [pmid 9244250] --- --- --- --- --- --- S0005326 // MVD1 SGDID:S0005326, Chr XIV from 701895-703085, Verified ORF // sgd // 11 // --- /// U49261 // Saccharomyces cerevisiae mevalonate pyrophosphate decarboxylase (MVD1) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000020070 // cdna:Genscan chromosome:SGD1:XIV:701895:703085:1 // ensembl // 11 // --- /// GENEFINDER00000020633 // cdna:GeneFinder chromosome:SGD1:XIV:701895:703085:1 // ensembl // 11 // --- /// YNR043W // cdna:known chromosome:SGD1:XIV:701895:703085:1 gene:YNR043W // ensembl // 11 // --- --- No cerevisiae_gene 1.58802507240755 1.39410184512129 1.17676095968403 1.81188381397883 1.07926892231709 Max fold change below threshold 4 1.81188381397883 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771827_at YKL206C.S1 Hypothetical protein 1.81158326793135 645.090362548828 442.689956665039 --- --- 5737 // cytoplasm // inferred from direct assay --- 420.848297119141 527.778991699219 762.401733398438 464.531616210938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL206C /GEN=CBT1 /DB_XREF=GI:6322643 /SEG=NC_001143:-49007,49810 /DEF=Hypothetical ORF /NOTE=Ykl206cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001689 // YKL206C SGDID:S0001689, Chr XI from 49810-49007, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018264 // cdna:Genscan chromosome:SGD1:XI:49007:49810:-1 // ensembl // 11 // --- /// GENEFINDER00000022951 // cdna:GeneFinder chromosome:SGD1:XI:49007:49810:-1 // ensembl // 11 // --- /// YKL206C // cdna:known chromosome:SGD1:XI:49007:49810:-1 gene:YKL206C // ensembl // 11 // --- --- No cerevisiae_gene 1.25553776454083 1.25408370501213 1.0722463530132 1.81158326793135 1.10379825554915 Max fold change below threshold 4 1.81158326793135 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777634_at SPBC1604.08c.S1 --- 1.81142114081303 --- --- --- --- 4.13414096832275 7.48867034912109 7.28577184677124 5.12393617630005 0.366210997104645 0.567627012729645 0.5 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1604.08c /GEN=imp1 /DEF=karyopherin (predicted) --- --- --- --- --- --- SPBC1604.08c // |imp1||importin alpha|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.02982602554134 1.81142114081303 1.10024646127151 1.76234238324174 1.23941980100859 Max fold change below threshold 4 1.81142114081303 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780099_at YNL197C.S1 RNA binding protein that binds to and sequesters the G1 cyclin CLN3 mRNA; regulates cell fate and dose-dependently inhibits passage through Start by regulating the critical cell size requirement necessary for cell cycle progression 1.81133660919981 606.276641845703 424.768280029297 WHI3 8361 // regulation of cell size // inferred from mutant phenotype /// 8361 // regulation of cell size // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay 3723 // RNA binding // inferred from sequence similarity /// 3723 // RNA binding // inferred from mutant phenotype /// 3723 // RNA binding // inferred from direct assay 379.305358886719 525.503601074219 687.049682617188 470.231201171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL197C /GEN=WHI3 /DB_XREF=GI:6324132 /SEG=NC_001146:-267607,269592 /DEF=RNA binding protein that binds to and sequesters the G1 cyclin CLN3 mRNA; regulates cell fate and dose-dependently inhibits passage through Start by regulating the critical cell size requirement necessary for cell cycle progression /NOTE=Whi3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11691832]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 11290704]; go_function: RNA binding [goid GO:0003723] [evidence IDA,IMP] [pmid 11691832]; go_process: regulation of cell size [goid GO:0008361] [evidence IGI,IMP] [pmid 11290704] --- --- --- --- --- --- S0005141 // WHI3 SGDID:S0005141, Chr XIV from 269592-267607, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020471 // cdna:GeneFinder chromosome:SGD1:XIV:267583:269592:-1 // ensembl // 11 // --- /// YNL197C // cdna:known chromosome:SGD1:XIV:267607:269592:-1 gene:YNL197C // ensembl // 11 // --- --- No cerevisiae_gene 1.52563770216906 1.38543679587496 1.11402068600744 1.81133660919981 1.23971673522364 Max fold change below threshold 4 1.81133660919981 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775468_at YDL208W.S1 Nuclear protein related to mammalian high mobility group (HMG) proteins, essential for function of H/ACA-type snoRNPs, which are involved in 18S rRNA processing 1.81125185346829 1833.58850097656 2934.4677734375 NHP2 154 // rRNA modification // traceable author statement /// 6365 // 35S primary transcript processing // traceable author statement /// 31118 // rRNA pseudouridine synthesis // inferred from mutant phenotype 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction 3723 // RNA binding // inferred from direct assay 2963.60888671875 2030.95568847656 1636.22131347656 2905.32666015625 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL208W /GEN=NHP2 /DB_XREF=GI:6319993 /SEG=NC_001136:+87462,87983 /DEF=HMG-like nuclear protein /NOTE=Nhp2p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence TAS] [pmid 10690410]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 11433018]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: rRNA modification [goid GO:0000154] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0002367 // NHP2 SGDID:S0002367, Chr IV from 87462-87983, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023898 // cdna:GeneFinder chromosome:SGD1:IV:87513:87983:1 // ensembl // 10 // --- /// GENSCAN00000024949 // cdna:Genscan chromosome:SGD1:IV:87513:87983:1 // ensembl // 10 // --- /// YDL208W // cdna:known chromosome:SGD1:IV:87462:87983:1 gene:YDL208W // ensembl // 10 // --- --- No cerevisiae_gene 1.3324379505232 -1.4592188808126 -1.35711882040667 -1.81125185346829 -1.02006047284176 Max fold change below threshold 4 1.81125185346829 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772167_at YKL018C-A.S1 Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 1.81097868232474 552.237335205078 328.445556640625 --- --- 5737 // cytoplasm // inferred from direct assay --- 327.946563720703 510.570434570313 593.904235839844 328.944549560547 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL018C-A /GEN=RAM2 /DB_XREF=GI:13129177 /SEG=NC_001143:-403223,403522 /DEF=Hypothetical ORF identified by homology. See FEBS Letters [2000] 487:31-36. /NOTE=Ykl018c-ap; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007615 // YKL018C-A SGDID:S0007615, Chr XI from 403522-403223, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YKL018C-A // cdna:known chromosome:SGD1:XI:403223:403522:-1 gene:YKL018C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.41508383356897 1.55687081693328 -1.17731418207355 1.81097868232474 1.00304313552952 Max fold change below threshold 4 1.81097868232474 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769573_at YOR187W.S1 Mitochondrial translation elongation factor Tu; comprises both GTPase and guanine nucleotide exchange factor activities, while these activities are found in separate proteins in S. pombe and humans 1.81058156238243 3724.90893554688 2112.45153808594 TUF1 6414 // translational elongation // inferred from genetic interaction /// 6414 // translational elongation // inferred from sequence similarity 5759 // mitochondrial matrix // inferred from sequence similarity 3746 // translation elongation factor activity // inferred from sequence similarity /// 3746 // translation elongation factor activity // inferred from genetic interaction /// 3924 // GTPase activity // inferred from genetic interaction /// 3924 // GTPase activity // inferred from sequence similarity 2088.93530273438 3782.18774414063 3667.63012695313 2135.9677734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR187W /GEN=TUF1 /DB_XREF=GI:6324761 /SEG=NC_001147:+684030,685343 /DEF=Translation elongation factor Tu, mitochondrial /NOTE=Tuf1p; go_component: mitochondrial matrix [goid GO:0005759] [evidence ISS] [pmid 6353412]; go_function: translation elongation factor activity [goid GO:0003746] [evidence ISS] [pmid 6353412]; go_process: translational elongation [goid GO:0006414] [evidence IGI] [pmid 9506898] --- --- --- --- --- --- S0005713 // TUF1 SGDID:S0005713, Chr XV from 684030-685343, Verified ORF // sgd // 11 // --- /// GENSCAN00000017604 // cdna:Genscan chromosome:SGD1:XV:684030:685343:1 // ensembl // 11 // --- /// GENEFINDER00000022659 // cdna:GeneFinder chromosome:SGD1:XV:684030:685343:1 // ensembl // 11 // --- /// YOR187W // cdna:known chromosome:SGD1:XV:684030:685343:1 gene:YOR187W // ensembl // 11 // --- --- No cerevisiae_gene 1.21552873626491 1.81058156238243 1.10143486438439 1.75574136841494 1.0225150442149 Max fold change below threshold 4 1.81058156238243 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772463_at YBL079W.S1 Abundant subunit of the nuclear pore complex (NPC), required for proper localization of specific nucleoporins within the NPC, involved in nuclear envelope permeability and in chromosome segregation, has similarity to Nup157p 1.8102302879487 733.420288085938 1237.73162841797 NUP170 59 // protein-nucleus import, docking // inferred from physical interaction /// 6406 // mRNA-nucleus export // traceable author statement /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6999 // nuclear pore organization and biogenesis // traceable author statement /// 7059 // chromosome segregation // inferred from mutant phenotype 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement 1210.52001953125 668.710510253906 798.130065917969 1264.94323730469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL079W /GEN=NUP170 /DB_XREF=GI:6319392 /SEG=NC_001134:+75256,79764 /DEF=Abundant subunit of the nuclear pore complex (NPC), required for proper localization of specific nucleoporins within the NPC, involved in nuclear envelope permeability and in chromosome segregation, has similarity to Nup157p /NOTE=Nup170p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: chromosome segregation [goid GO:0007059] [evidence IMP] [pmid 11290711]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence TAS] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus import, docking [goid GO:0000059] [evidence IPI] [pmid 9864357]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0000175 // NUP170 SGDID:S0000175, Chr II from 75256-79764, Verified ORF // sgd // 11 // --- /// GENSCAN00000021078 // cdna:Genscan chromosome:SGD1:II:75469:79764:1 // ensembl // 11 // --- /// GENEFINDER00000022107 // cdna:GeneFinder chromosome:SGD1:II:75469:79764:1 // ensembl // 11 // --- /// YBL079W // cdna:known chromosome:SGD1:II:75256:79764:1 gene:YBL079W // ensembl // 11 // --- --- No cerevisiae_gene -1.41954071897479 -1.8102302879487 -1.14215404149269 -1.51669517441242 1.04495854417551 Max fold change below threshold 4 1.8102302879487 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776901_at YJL077C.S1 Protein of unknown function 1.80980503099 149.957202911377 121.395477294922 ICS3 --- --- --- 107.414688110352 194.399642944336 105.514762878418 135.376266479492 0.030273400247097 0.0805663987994194 0.0375977009534836 0.0239257998764515 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL077C /GEN=ICS3 /DB_XREF=GI:6322384 /SEG=NC_001142:-294582,294977 /DEF=Protein of unknown function /NOTE=Ics3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003613 // span:35-57,72-94 // numtm:2 S0003613 // ICS3 SGDID:S0003613, Chr X from 294977-294582, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YJL077C // cdna:known chromosome:SGD1:X:294582:294977:-1 gene:YJL077C // ensembl // 11 // --- YJL077W-A // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene 1.11671384548597 1.80980503099 1.08433980455226 -1.01800625031137 1.2603142909135 Max fold change below threshold 4 1.80980503099 Max fold change below threshold PPAPPP No 4 0 PAPP 1 3 0 No No 2 < x = 3
1779228_at SPAC8C9.14.S1 --- 1.80961732479897 --- --- --- --- 1.06685054302216 0.840697407722473 0.673747003078461 1.6167323589325 0.725830018520355 0.943848013877869 0.943848013877869 0.55908203125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8C9.14 /GEN=prr1 /DEF=transcription factor --- --- --- --- --- --- AB041768 // Schizosaccharomyces pombe mRNA for Prr1, complete cds. // gb // 11 // --- /// SPAC8C9.14 // |prr1||transcription factor|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.42114832171262 -1.26900658099131 1.80961732479897 -1.58345868426507 1.51542535128927 Max fold change below threshold 0 1.80961732479897 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770736_at YLR396C.S1 ATP-binding protein that is a subunit of the homotypic vacuole fusion and vacuole protein sorting (HOPS) complex; essential for membrane docking and fusion at both the Golgi-to-endosome and endosome-to-vacuole stages of protein transport 1.80955480065187 242.475486755371 414.097045898438 VPS33 6895 // Golgi to endosome transport // inferred from genetic interaction /// 42145 // homotypic vacuole fusion, non-autophagic // inferred from direct assay /// 45324 // late endosome to vacuole transport // inferred from genetic interaction 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 5829 // cytosol // inferred from direct assay /// 30897 // HOPS complex // inferred from physical interaction 5524 // ATP binding // inferred from sequence similarity /// 5524 // ATP binding // inferred from mutant phenotype 409.159210205078 258.840545654297 226.110427856445 419.034881591797 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR396C /GEN=VPS33 /DB_XREF=GI:6323428 /SEG=NC_001144:-910235,912310 /DEF=vacuolar sorting protein essential for vacuolar morphogenesis and function /NOTE=Vps33p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 9624182]; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 9624182]; go_function: ATP binding [goid GO:0005524] [evidence IMP,ISS] [pmid 10944212]; go_process: Golgi to endosome transport [goid GO:0006895] [evidence IGI] [pmid 11422941]; go_process: homotypic vacuole fusion, non-autophagic [goid GO:0042145] [evidence IDA] [pmid 10944212]; go_process: late endosome to vacuole transport [goid GO:0045324] [evidence IGI] [pmid 11422941] --- --- --- --- --- --- S0004388 // VPS33 SGDID:S0004388, Chr XII from 912310-910235, reverse complement, Verified ORF // sgd // 11 // --- /// M34474 // S.cerevisiae vacuolar function expression protein (SLP1) gene, complete cds. // gb // 11 // --- /// GENSCAN00000018117 // cdna:Genscan chromosome:SGD1:XII:910235:911737:-1 // ensembl // 11 // --- /// GENEFINDER00000024651 // cdna:GeneFinder chromosome:SGD1:XII:910235:912310:-1 // ensembl // 11 // --- /// YLR396C // cdna:known chromosome:SGD1:XII:910235:912310:-1 gene:YLR396C // ensembl // 11 // --- --- No cerevisiae_gene 1.01575116117461 -1.58073847808814 -1.19643537578143 -1.80955480065187 1.02413650026788 Max fold change below threshold 4 1.80955480065187 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776218_at YDR461W.S1 Mating pheromone a-factor, made by a cells; interacts with alpha cells to induce cell cycle arrest and other responses leading to mating; biogenesis involves C-terminal modification, N-terminal proteolysis, and export; also encoded by MFA2 1.8088217987591 119.259780883789 205.094802856445 MFA1 750 // signal transduction during conjugation with cellular fusion // inferred from genetic interaction /// 750 // signal transduction during conjugation with cellular fusion // inferred from mutant phenotype 5576 // extracellular region // inferred from direct assay /// 5625 // soluble fraction // inferred from direct assay 772 // mating pheromone activity // inferred from mutant phenotype 180.352996826172 138.812118530273 99.7074432373047 229.836608886719 0.0239257998764515 0.0375977009534836 0.129638999700546 0.030273400247097 P P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR461W /GEN=MFA1 /DB_XREF=GI:6320669 /SEG=NC_001136:+1385164,1385274 /DEF=a-factor mating pheromone precursor /NOTE=Mfa1p; go_component: extracellular [goid GO:0005576] [evidence IDA] [pmid 10022942]; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 11746603]; go_function: pheromone activity [goid GO:0005186] [evidence TAS] [pmid 3285180]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence IGI,IMP] [pmid 3285180] --- --- --- --- --- --- S0002869 // MFA1 SGDID:S0002869, Chr IV from 1385166-1385276, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023693 // cdna:GeneFinder chromosome:SGD1:IV:1385166:1385276:1 // ensembl // 11 // --- /// YDR461W // cdna:known chromosome:SGD1:IV:1385166:1385276:1 gene:YDR461W // ensembl // 11 // --- --- No cerevisiae_gene -1.80547771109275 -1.29925973852808 1.05326612188858 -1.8088217987591 1.27437088893089 Max fold change below threshold 4 1.8088217987591 Max fold change below threshold PAPMAP No 4 0 PPAP 1 3 0 No No 2 < x = 3
1778493_at YPR022C.S1 Hypothetical protein 1.80869093216942 931.716796875 807.844879150391 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 793.174560546875 890.046813964844 973.386779785156 822.515197753906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR022C /GEN=AGC1 /DB_XREF=GI:6325279 /SEG=NC_001148:-603906,607307 /DEF=Hypothetical ORF /NOTE=Ypr022cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006226 // YPR022C SGDID:S0006226, Chr XVI from 607309-603908, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017202 // cdna:Genscan chromosome:SGD1:XVI:603908:607309:-1 // ensembl // 11 // --- /// GENEFINDER00000021012 // cdna:GeneFinder chromosome:SGD1:XVI:603908:607309:-1 // ensembl // 11 // --- /// YPR022C // cdna:known chromosome:SGD1:XVI:603908:607309:-1 gene:YPR022C // ensembl // 11 // --- --- No cerevisiae_gene -1.80869093216942 1.12213232526164 1.26904831966334 1.22720373068197 1.03699139970753 Max fold change below threshold 4 1.80869093216942 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775558_at YDR182W.S1 Putative membrane protein of unknown function involved in Mn2+ homeostasis; mutants display actin and general growth defects, heterogeneous cell cycle arrests, and pleiotropic defects in cell cycle progression and organelle distribution 1.80863950323048 667.667083740234 1079.25952148438 CDC1 747 // conjugation with cellular fusion // traceable author statement /// 6281 // DNA repair // inferred from mutant phenotype /// 30026 // manganese ion homeostasis // inferred from genetic interaction /// 30026 // manganese ion homeostasis // inferred from mutant phenotype /// 30036 // actin cytoskeleton organization and biogenesis // inferred from mutant phenotype 16021 // integral to membrane // inferred from sequence similarity --- 1039.19299316406 574.571655273438 760.762512207031 1119.32604980469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR182W /GEN=CDC1 /DB_XREF=GI:6320388 /SEG=NC_001136:+827575,829050 /DEF=Putative membrane protein of unknown function involved in Mn2+ homeostasis; mutants display actin and general growth defects, heterogeneous cell cycle arrests, and pleiotropic defects in cell cycle progression and organelle distribution /NOTE=Cdc1p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 12524434]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 7969142]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence IMP] [pmid 11285273]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence TAS] [pmid 9560392]; go_process: manganese ion homeostasis [goid GO:0030026] [evidence IGI,IMP] [pmid 9560393] --- --- --- --- --- S0002590 // span:42-64,394-416,468-490 // numtm:3 S0002590 // CDC1 SGDID:S0002590, Chr IV from 827577-829052, Verified ORF // sgd // 10 // --- /// YDR182W // cdna:known chromosome:SGD1:IV:827577:829052:1 gene:YDR182W // ensembl // 10 // --- --- No cerevisiae_gene -1.40267514493135 -1.80863950323048 1.06374422667078 -1.36598869750993 1.07711085156246 Max fold change below threshold 4 1.80863950323048 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771171_at YHR072W.S1 Lanosterol synthase, an essential enzyme that catalyzes the cyclization of squalene 2,3-epoxide, a step in ergosterol biosynthesis 1.80853240844018 1634.70294189453 2734.31567382813 ERG7 6696 // ergosterol biosynthesis // traceable author statement 5783 // endoplasmic reticulum // traceable author statement /// 5811 // lipid particle // inferred from direct assay /// 5886 // plasma membrane // traceable author statement 250 // lanosterol synthase activity // traceable author statement 2887.77368164063 1672.65612792969 1596.74975585938 2580.85766601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR072W /GEN=ERG7 /DB_XREF=GI:6321863 /SEG=NC_001140:+239099,241294 /DEF=Lanosterol synthase, an essential enzyme that catalyzes the cyclization of squalene 2,3-epoxide, a step in ergosterol biosynthesis /NOTE=Erg7p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS]; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 10515935]; go_component: plasma membrane [goid GO:0005886] [evidence TAS] [pmid 10515935]; go_function: lanosterol synthase activity [goid GO:0000250] [evidence TAS]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence TAS] --- --- --- --- --- --- S0001114 // ERG7 SGDID:S0001114, Chr VIII from 239099-241294, Verified ORF // sgd // 11 // --- /// GENSCAN00000016616 // cdna:Genscan chromosome:SGD1:VIII:239099:241294:1 // ensembl // 11 // --- /// GENEFINDER00000020197 // cdna:GeneFinder chromosome:SGD1:VIII:239099:241294:1 // ensembl // 11 // --- /// YHR072W // cdna:known chromosome:SGD1:VIII:239099:241294:1 gene:YHR072W // ensembl // 11 // --- --- No cerevisiae_gene -1.08469566941413 -1.72645987027527 -1.09802045132911 -1.80853240844018 -1.11892016350472 Max fold change below threshold 4 1.80853240844018 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775245_at YOR150W.S1 Mitochondrial ribosomal protein of the large subunit 1.80798096232036 978.013641357422 1593.33892822266 MRPL23 27 // ribosomal large subunit assembly and maintenance // inferred from sequence similarity /// 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement /// 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // traceable author statement 1590.90881347656 879.936706542969 1076.09057617188 1595.76904296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR150W /GEN=MRPL23 /DB_XREF=GI:6324724 /SEG=NC_001147:+611999,612490 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl23p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence ISS] [pmid 9445368] --- --- --- --- --- --- S0005676 // MRPL23 SGDID:S0005676, Chr XV from 611999-612490, Verified ORF // sgd // 11 // --- /// GENSCAN00000017574 // cdna:Genscan chromosome:SGD1:XV:611999:612490:1 // ensembl // 11 // --- /// GENEFINDER00000022661 // cdna:GeneFinder chromosome:SGD1:XV:611999:612490:1 // ensembl // 11 // --- /// YOR150W // cdna:known chromosome:SGD1:XV:611999:612490:1 gene:YOR150W // ensembl // 11 // --- --- No cerevisiae_gene -1.30079734281609 -1.80798096232036 1.07291782800604 -1.47841533854531 1.00305500192784 Max fold change below threshold 4 1.80798096232036 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779624_at SPCC330.14c.S1 --- 1.80756751323638 --- --- --- --- 5.52242183685303 6.22333002090454 4.18694877624512 4.13129663467407 0.432372987270355 0.696289002895355 0.665526986122131 0.533936023712158 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC330.14c /GEN=rpl2402 /DEF=60S ribosomal protein L24 --- --- --- --- --- --- AB032714 // Schizosaccharomyces pombe rpl24 mRNA, complete cds. // gb // 11 // --- /// SPCC330.14c // |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.77434908755951 1.12692043541008 -1.80756751323638 -1.31896092643521 -1.3367284717595 Max fold change below threshold 4 1.80756751323638 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773444_at YFR015C.S1 Glycogen synthase with similarity to Gsy2p, the more highly expressed yeast homolog; expression induced by glucose limitation, nitrogen starvation, environmental stress, and entry into stationary phase 1.80661357554824 4750.93798828125 2772.32202148438 GSY1 5977 // glycogen metabolism // inferred from genetic interaction /// 5977 // glycogen metabolism // inferred from mutant phenotype /// 5977 // glycogen metabolism // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4373 // glycogen (starch) synthase activity // inferred from direct assay 2862.57934570313 5171.57470703125 4330.30126953125 2682.06469726563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR015C /GEN=GSY1 /DB_XREF=GI:14318537 /SEG=NC_001138:-174257,176383 /DEF=Glycogen synthase with similarity to Gsy2p, the more highly expressed yeast homolog; expression induced by glucose limitation, nitrogen starvation, enviromental stress, and entry into stationary phase /NOTE=Gsy1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: glycogen (starch) synthase activity [goid GO:0004373] [evidence IDA] [pmid 2123485]; go_process: glycogen metabolism [goid GO:0005977] [evidence IGI,IMP,ISS] [pmid 1908457] --- --- --- --- --- --- S0001911 // GSY1 SGDID:S0001911, Chr VI from 176383-174257, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018527 // cdna:GeneFinder chromosome:SGD1:VI:174257:176383:-1 // ensembl // 11 // --- /// GENSCAN00000023256 // cdna:Genscan chromosome:SGD1:VI:174257:176383:-1 // ensembl // 11 // --- /// YFR015C // cdna:known chromosome:SGD1:VI:174257:176383:-1 gene:YFR015C // ensembl // 11 // --- --- No cerevisiae_gene -1.00231414558353 1.80661357554824 1.07650263856462 1.51272707113997 -1.06730436018994 Max fold change below threshold 4 1.80661357554824 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770880_at SPAC2C4.08.S1 --- 1.80631624904341 --- --- --- --- 0.867192625999451 1.042604804039 1.1367974281311 0.624640643596649 0.904784977436066 0.870360970497131 0.850341975688934 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2C4.08 /DEF=conserved yeast protein --- --- --- --- --- --- SPAC2C4.08 // |||conserved yeast protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.80631624904341 1.20227591054224 -1.20001570429343 1.31089378997075 -1.38830643649155 Max fold change below threshold 0 1.80631624904341 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777962_at YJL184W.S1 Protein of unknown function, proposed to be involved in the transfer of mannosylphosphate groups onto N-linked oligosaccharides; also proposed to be involved in responding to osmotic stress 1.80614973510777 195.904335021973 333.775314331055 GON7 32 // cell wall mannoprotein biosynthesis // inferred from mutant phenotype /// 9269 // response to dessication // inferred from expression pattern /// 9269 // response to dessication // inferred from sequence similarity --- --- 325.866882324219 180.420745849609 211.387924194336 341.683746337891 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL184W /GEN=GON7 /DB_XREF=GI:6322277 /SEG=NC_001142:+83446,83817 /DEF=Protein of unknown function, proposed to be involved in the transfer of mannosylphosphate groups onto N-linked oligosaccharides; also proposed to be involved in responding to osmotic stress /NOTE=Gon7p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall mannoprotein biosynthesis [goid GO:0000032] [evidence IMP] [pmid 14734024]; go_process: response to dessication [goid GO:0009269] [evidence IEP,ISS] [pmid 10681550] --- --- --- --- --- --- S0003720 // GON7 SGDID:S0003720, Chr X from 83446-83817, Verified ORF // sgd // 11 // --- /// GENSCAN00000023999 // cdna:Genscan chromosome:SGD1:X:83446:83817:1 // ensembl // 11 // --- /// GENEFINDER00000024500 // cdna:GeneFinder chromosome:SGD1:X:83446:83817:1 // ensembl // 11 // --- /// YJL184W // cdna:known chromosome:SGD1:X:83446:83817:1 gene:YJL184W // ensembl // 11 // --- --- No cerevisiae_gene -1.49366368302455 -1.80614973510777 -1.0768714109559 -1.54155864657926 1.04853780752699 Max fold change below threshold 4 1.80614973510777 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776054_at YIL056W.S1 Hypothetical protein 1.80585408988738 2982.17517089844 1862.01501464844 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1882.12683105469 3398.84643554688 2565.50390625 1841.90319824219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL056W /GEN=SNP1 /DB_XREF=GI:6322133 /SEG=NC_001141:+249989,251911 /DEF=Hypothetical ORF /NOTE=Yil056wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001318 // YIL056W SGDID:S0001318, Chr IX from 249989-251911, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016435 // cdna:Genscan chromosome:SGD1:IX:249989:251911:1 // ensembl // 11 // --- /// GENEFINDER00000019007 // cdna:GeneFinder chromosome:SGD1:IX:249989:251911:1 // ensembl // 11 // --- /// YIL056W // cdna:known chromosome:SGD1:IX:249989:251911:1 gene:YIL056W // ensembl // 11 // --- --- No cerevisiae_gene 1.322462803006 1.80585408988738 1.10480236481348 1.3630876856542 -1.02183808185516 Max fold change below threshold 4 1.80585408988738 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778716_at YGL210W.S1 GTPase of the Ypt/Rab family, very similar to Ypt31p; involved in the exocytic pathway; mediates intra-Golgi traffic or the budding of post-Golgi vesicles from the trans-Golgi 1.80568914215988 316.160461425781 519.814544677734 YPT32 6887 // exocytosis // inferred from mutant phenotype /// 16192 // vesicle-mediated transport // inferred from genetic interaction /// 16192 // vesicle-mediated transport // inferred from mutant phenotype 5768 // endosome // inferred from direct assay /// 5794 // Golgi apparatus // traceable author statement /// 5794 // Golgi apparatus // inferred from direct assay 3924 // GTPase activity // inferred from sequence similarity /// 3924 // GTPase activity // inferred from physical interaction 528.018981933594 339.901275634766 292.419647216797 511.610107421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL210W /GEN=YPT32 /DB_XREF=GI:6321228 /SEG=NC_001139:+93795,94463 /DEF=probably involved in intra-Golgi transport or in the formation of transport vesicles at the most distal Golgi compartment /NOTE=Ypt32p; go_component: Golgi apparatus [goid GO:0005794] [evidence TAS] [pmid 12221137]; go_function: GTPase activity [goid GO:0003924] [evidence IPI] [pmid 10071213]; go_function: GTPase activity [goid GO:0003924] [evidence ISS] [pmid 9151665]; go_process: exocytosis [goid GO:0006887] [evidence IMP] [pmid 9151665]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IGI,IMP] [pmid 9151665] --- --- --- --- --- --- S0003178 // YPT32 SGDID:S0003178, Chr VII from 93797-94465, Verified ORF // sgd // 11 // --- /// GENSCAN00000019190 // cdna:Genscan chromosome:SGD1:VII:93797:94465:1 // ensembl // 11 // --- /// GENEFINDER00000021438 // cdna:GeneFinder chromosome:SGD1:VII:93797:94465:1 // ensembl // 11 // --- /// YGL210W // cdna:known chromosome:SGD1:VII:93797:94465:1 gene:YGL210W // ensembl // 11 // --- --- No cerevisiae_gene 1.14206901510254 -1.55344807384885 -1.09259805257277 -1.80568914215988 -1.03207300691225 Max fold change below threshold 4 1.80568914215988 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770883_at YOR228C.S1 Hypothetical protein 1.8054276901754 3492.14404296875 2202.25085449219 --- --- 5739 // mitochondrion // inferred from direct assay --- 2210.90356445313 3506.50268554688 3477.78540039063 2193.59814453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR228C /GEN=ISU2 /DB_XREF=GI:6324802 /SEG=NC_001147:-766869,767777 /DEF=Hypothetical ORF /NOTE=Yor228cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005754 // span:60-82,102-124,174-191,224-246,259-276 // numtm:5 S0005754 // YOR228C SGDID:S0005754, Chr XV from 767777-766869, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017647 // cdna:Genscan chromosome:SGD1:XV:766869:767777:-1 // ensembl // 11 // --- /// YOR228C // cdna:known chromosome:SGD1:XV:766869:767777:-1 gene:YOR228C // ensembl // 11 // --- --- No cerevisiae_gene -1.8054276901754 1.58600435673648 1.23657573807725 1.57301542062097 -1.00788905660092 Max fold change below threshold 4 1.8054276901754 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773253_at YDR130C.S1 Basic protein with putative coiled-coil regions that comprises a filament between spindle pole bodies; self-assembles into filaments with a diameter of approximately 10 nm; potential Cdc28p substrate 1.8053179521466 326.713241577148 352.79035949707 FIN1 --- 5634 // nucleus // inferred from direct assay /// 5816 // spindle pole body // inferred from direct assay 5515 // protein binding // inferred from physical interaction 297.422241210938 248.501068115234 404.925415039063 408.158477783203 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR130C /GEN=FIN1 /DB_XREF=GI:6320335 /SEG=NC_001136:-715741,716616 /DEF=Basic protein with putative coiled-coil regions that comprises a filament between spindle pole bodies; self-assembles into filaments with a diameter of approximately 10 nm; potential Cdc28p substrate /NOTE=Fin1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11929974]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 11929974]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12551942]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002537 // FIN1 SGDID:S0002537, Chr IV from 716617-715742, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025194 // cdna:Genscan chromosome:SGD1:IV:715742:716617:-1 // ensembl // 11 // --- /// YDR130C // cdna:known chromosome:SGD1:IV:715742:716617:-1 gene:YDR130C // ensembl // 11 // --- GENEFINDER00000023724 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.25058900060419 -1.19686504153382 1.8053179521466 1.36144967972278 1.3723199587274 Max fold change below threshold 4 1.8053179521466 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776600_at YNL317W.S1 Integral subunit of the pre-mRNA cleavage and polyadenylation factor (CPF) complex; plays an essential role in mRNA 3'-end formation by bridging different processing factors and thereby promoting the assembly of the processing complex 1.8052044911773 414.832778930664 646.564056396484 PFS2 6378 // mRNA polyadenylylation // inferred from direct assay /// 6378 // mRNA polyadenylylation // traceable author statement /// 6378 // mRNA polyadenylylation // inferred from mutant phenotype /// 6379 // mRNA cleavage // inferred from direct assay /// 6379 // mRNA cleavage // inferred from mutant phenotype /// 6379 // mRNA cleavage // traceable author statement 5847 // mRNA cleavage and polyadenylation specificity factor complex // traceable author statement /// 5847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from physical interaction 3723 // RNA binding // inferred from curator 588.413146972656 325.953735351563 503.711822509766 704.714965820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL317W /GEN=PFS2 /DB_XREF=GI:6324012 /SEG=NC_001146:+40618,42015 /DEF=Polyadenylation Factor I subunit 2 /NOTE=Pfs2p; go_component: mRNA cleavage and polyadenylation specificity factor complex [goid GO:0005847] [evidence TAS] [pmid 11344258]; go_component: mRNA cleavage and polyadenylation specificity factor complex [goid GO:0005847] [evidence IPI] [pmid 12819204]; go_function: cleavage/polyadenylation specificity factor activity [goid GO:0030364] [evidence TAS] [pmid 11344258]; go_process: mRNA cleavage [goid GO:0006379] [evidence IMP] [pmid 10619842]; go_process: mRNA cleavage [goid GO:0006379] [evidence IDA,TAS] [pmid 11344258]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IMP] [pmid 10619842]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IDA,TAS] [pmid 11344258] --- --- --- hanks // 1.5.1 // AGC group; AGC V Budding yeast AGC-related; SCH9 // 0.047 --- --- S0005261 // PFS2 SGDID:S0005261, Chr XIV from 40618-42015, Verified ORF // sgd // 11 // --- /// GENSCAN00000019788 // cdna:Genscan chromosome:SGD1:XIV:40618:42015:1 // ensembl // 11 // --- /// GENEFINDER00000020626 // cdna:GeneFinder chromosome:SGD1:XIV:40618:42015:1 // ensembl // 11 // --- /// YNL317W // cdna:known chromosome:SGD1:XIV:40618:42015:1 gene:YNL317W // ensembl // 11 // --- --- No cerevisiae_gene -1.69232124953449 -1.8052044911773 1.41363215273468 -1.16815433086494 1.19765333158516 Max fold change below threshold 4 1.8052044911773 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773976_at YBR203W.S1 Protein required for wild-type resistance to the antifungal drug ciclopirox olamine; not related to the COS family of subtelomerically-encoded proteins 1.80518193181849 756.699157714844 475.503219604492 COS111 7165 // signal transduction // inferred from mutant phenotype --- --- 478.367858886719 649.857299804688 863.541015625 472.638580322266 0.00195312988944352 0.00195312988944352 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR203W /GEN=COS111 /DB_XREF=GI:6319680 /SEG=NC_001134:+629125,631899 /DEF=Protein required for wild-type resistance to the antifungal drug ciclopirox olamine; not related to the COS family of subtelomerically-encoded proteins /NOTE=Cos111p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: signal transduction [goid GO:0007165] [evidence IMP] [pmid 12661761] --- --- --- --- scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 8.19999980926514 --- S0000407 // COS111 SGDID:S0000407, Chr II from 629163-631937, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022229 // cdna:GeneFinder chromosome:SGD1:II:629508:631937:1 // ensembl // 11 // --- /// GENSCAN00000021303 // cdna:Genscan chromosome:SGD1:II:629577:631937:1 // ensembl // 11 // --- /// YBR203W // cdna:known chromosome:SGD1:II:629163:631937:1 gene:YBR203W // ensembl // 11 // --- --- No cerevisiae_gene 1.31049192614199 1.35848863532986 1.09136584141608 1.80518193181849 -1.01212190202617 Max fold change below threshold 4 1.80518193181849 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778100_at YJL051W.S1 Protein of unknown function, localized to the bud tip; mRNA is targeted to the bud via the mRNA transport system involving She2p 1.80512315451765 69.5898704528809 103.045318603516 --- --- 5934 // bud tip // inferred from direct assay --- 99.0457077026367 54.8692245483398 84.3105163574219 107.044929504395 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL051W /GEN=TDH1 /DB_XREF=GI:6322410 /SEG=NC_001142:+339703,342171 /DEF=Protein of unknown function, localized to the bud tip; mRNA is targeted to the bud via the mRNA transport system involving She2p /NOTE=Yjl051wp; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 13679573]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003587 // span:15-37,44-65,75-97,118-140 // numtm:4 S0003587 // YJL051W SGDID:S0003587, Chr X from 339703-342171, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024102 // cdna:Genscan chromosome:SGD1:X:339979:342171:1 // ensembl // 11 // --- /// GENEFINDER00000024343 // cdna:GeneFinder chromosome:SGD1:X:339979:342171:1 // ensembl // 11 // --- /// YJL051W // cdna:known chromosome:SGD1:X:339703:342171:1 gene:YJL051W // ensembl // 11 // --- --- No cerevisiae_gene 1.72464741695866 -1.80512315451765 -1.17011380789236 -1.17477287510312 1.08076293246118 Max fold change below threshold 4 1.80512315451765 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779825_at YNR065C.S1 Sortilin homolog, interacts with proteins of the endocytic machinery 1.80455541831394 431.291564941406 381.310638427734 --- --- --- --- 358.04248046875 422.913146972656 439.669982910156 404.578796386719 0.00195312988944352 0.00195312988944352 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR065C /GEN=FRE4 /DB_XREF=GI:6324393 /SEG=NC_001146:-750347,753697 /DEF=Sortilin homolog, interacts with proteins of the endocytic machinery /NOTE=Ynr065cp --- --- --- --- --- S0005348 // span:936-958 // numtm:1 S0005348 // YSN1 SGDID:S0005348, Chr XIV from 753698-750348, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000020091 // cdna:Genscan chromosome:SGD1:XIV:750348:752951:-1 // ensembl // 10 // --- /// YNR065C // cdna:known chromosome:SGD1:XIV:750348:753698:-1 gene:YNR065C // ensembl // 10 // --- GENEFINDER00000020554 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.80455541831394 1.18118147997125 1.32082084931765 1.22798273080485 1.12997428645071 Max fold change below threshold 4 1.80455541831394 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772820_at YFL013C.S1 Subunit of the INO80 chromatin remodeling complex 1.80435392162703 843.726043701172 512.758911132813 IES1 6338 // chromatin remodeling // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 31011 // INO80 complex // inferred from physical interaction --- 503.048645019531 779.774291992188 907.677795410156 522.469177246094 0.00122069998178631 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL013C /GEN=IES1 /DB_XREF=GI:14318508 /SEG=NC_001138:-107846,109924 /DEF=Subunit of the INO80 chromatin remodeling complex /NOTE=Ies1p; go_component: chromatin remodeling complex [goid GO:0016585] [evidence IPI] [pmid 12887900]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin remodeling [goid GO:0006338] [evidence IPI] [pmid 12887900] --- --- --- --- --- --- S0001881 // IES1 SGDID:S0001881, Chr VI from 109924-107846, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000018519 // cdna:GeneFinder chromosome:SGD1:VI:107846:109924:-1 // ensembl // 10 // --- /// GENSCAN00000023230 // cdna:Genscan chromosome:SGD1:VI:107846:109924:-1 // ensembl // 10 // --- /// YFL013C // cdna:known chromosome:SGD1:VI:107846:109924:-1 gene:YFL013C // ensembl // 10 // --- X55785 // gb // 1 // Negative Strand Matching Probes /// YFL013W-A // ensembl // 10 // Negative Strand Matching Probes No cerevisiae_gene -1.11038489112752 1.55009719181713 1.15281045781768 1.80435392162703 1.0386056744588 Max fold change below threshold 4 1.80435392162703 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769568_at YGR010W.S1 Nicotinic acid mononucleotide adenylyltransferase, involved in NAD(+) salvage pathway 1.80435013478697 271.967979431152 277.158966064453 NMA2 19674 // NAD metabolism // traceable author statement 5634 // nucleus // inferred from direct assay 4515 // nicotinate-nucleotide adenylyltransferase activity // inferred from genetic interaction /// 4515 // nicotinate-nucleotide adenylyltransferase activity // inferred from sequence similarity 251.726440429688 244.684585571289 299.251373291016 302.591491699219 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR010W /GEN=NMA2 /DB_XREF=GI:6321447 /SEG=NC_001139:+511547,512734 /DEF=NAD(+) salvage pathway /NOTE=Nma2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11884393]; go_function: nicotinate-nucleotide adenylyltransferase activity [goid GO:0004515] [evidence IGI,ISS] [pmid 11884393]; go_process: NAD metabolism [goid GO:0019674] [evidence TAS] [pmid 11884393] --- --- --- --- --- --- S0003242 // NMA2 SGDID:S0003242, Chr VII from 511549-512736, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021682 // cdna:GeneFinder chromosome:SGD1:VII:511549:512736:1 // ensembl // 11 // --- /// GENSCAN00000019349 // cdna:Genscan chromosome:SGD1:VII:511759:512736:1 // ensembl // 11 // --- /// YGR010W // cdna:known chromosome:SGD1:VII:511549:512736:1 gene:YGR010W // ensembl // 11 // --- YGR011W // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene 1.02695993924767 -1.02877931538661 1.80435013478697 1.18879595159017 1.20206479376067 Max fold change below threshold 4 1.80435013478697 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776988_at YER008C.S1 Non-essential subunit of the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, Exo84p) which mediates targeting of post-Golgi vesicles to sites of active exocytosis; Sec3p specifically is a spatial landmark for secretion 1.80418900476738 1001.78244018555 1806.30377197266 SEC3 910 // cytokinesis // inferred from mutant phenotype /// 6893 // Golgi to plasma membrane transport // traceable author statement /// 6904 // vesicle docking during exocytosis // traceable author statement /// 6906 // vesicle fusion // traceable author statement /// 7121 // bipolar bud site selection // inferred from mutant phenotype 131 // incipient bud site // inferred from direct assay /// 145 // exocyst // traceable author statement /// 145 // exocyst // inferred from physical interaction /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 30427 // site of polarized growth // inferred from direct assay 5515 // protein binding // inferred from physical interaction /// 5515 // protein binding // inferred from genetic interaction 1685.44641113281 970.624084472656 1032.94079589844 1927.1611328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER008C /GEN=SEC3 /DB_XREF=GI:6320845 /SEG=NC_001137:-167807,171817 /DEF=Profilin synthetic lethal protein, has region of coiled-coil structure; subunit of the Exocyst complex, which contains Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, and Exo70p and is required for exocytosis; potential Cdc28p substrate /NOTE=Sec3p; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IDA] [pmid 10652251]; go_component: exocyst [goid GO:0000145] [evidence TAS] [pmid 9700152]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi to plasma membrane transport [goid GO:0006893] [evidence TAS] [pmid 9700152]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence TAS] [pmid 9700152]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251]; go_process: vesicle docking during exocytosis [goid GO:0006904] [evidence TAS] [pmid 9700152]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 9700152] --- --- --- --- --- --- S0000810 // SEC3 SGDID:S0000810, Chr V from 171817-167807, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016811 // cdna:Genscan chromosome:SGD1:V:167807:170338:-1 // ensembl // 11 // --- /// GENEFINDER00000019645 // cdna:GeneFinder chromosome:SGD1:V:167807:171244:-1 // ensembl // 11 // --- /// YER008C // cdna:known chromosome:SGD1:V:167807:171817:-1 gene:YER008C // ensembl // 11 // --- --- No cerevisiae_gene -1.80418900476738 -1.73645640788784 -1.0427879716059 -1.63169701286397 1.14341287867897 Max fold change below threshold 4 1.80418900476738 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769819_at YPL002C.S1 Component of the ESCRT-II complex, which is involved in ubiquitin-dependent sorting of proteins into the endosome; appears to be functionally related to SNF7; involved in glucose derepression 1.80376819325098 483.745178222656 418.979598999023 SNF8 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6623 // protein-vacuolar targeting // inferred from physical interaction /// 43162 // ubiquitin-dependent protein catabolism via the multivesicular body pathway // inferred from curator /// 45014 // negative regulation of transcription by glucose // inferred from mutant phenotype 814 // ESCRT II complex // inferred from direct assay --- 374.381591796875 406.136108398438 561.354248046875 463.577606201172 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL002C /GEN=SNF8 /DB_XREF=GI:6325255 /SEG=NC_001148:-553622,554323 /DEF=appears to be functionally related to SNF7 /NOTE=Snf8p; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 12194858]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: negative regulation of transcription by glucose [goid GO:0045014] [evidence IMP] [pmid 7785322]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP,IPI] [pmid 12194858] --- --- --- --- --- --- S0005923 // SNF8 SGDID:S0005923, Chr XVI from 554325-553624, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017183 // cdna:Genscan chromosome:SGD1:XVI:553624:554325:-1 // ensembl // 11 // --- /// YPL002C // cdna:known chromosome:SGD1:XVI:553624:554325:-1 gene:YPL002C // ensembl // 11 // --- --- No cerevisiae_gene 1.59806487521414 1.08481858429298 1.80376819325098 1.49941733340202 1.23824893199528 Max fold change below threshold 4 1.80376819325098 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770971_at YDR064W.S1 Protein component of the small (40S) ribosomal subunit; has similarity to E. coli S15 and rat S13 ribosomal proteins 1.8037446870905 3480.67553710938 5341.02026367188 RPS13 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 5946.5732421875 3664.55786132813 3296.79321289063 4735.46728515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR064W /GEN=RPS13 /DB_XREF=GI:6320269 /SEG=NC_001136:+579454,580448 /DEF=Protein component of the small (40S) ribosomal subunit; has similarity to E. coli S15 and rat S13 ribosomal proteins /NOTE=Rps13p; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0002471 // RPS13 SGDID:S0002471, Chr IV from 579455-579475,580015-580449, intron sequence removed, Verified ORF // sgd // 11 // --- /// YDR064W // cdna:known chromosome:SGD1:IV:579455:580449:1 gene:YDR064W // ensembl // 11 // --- GENEFINDER00000023641 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.04769692328365 -1.62272597874395 -1.51717554232572 -1.8037446870905 -1.25575215371619 Max fold change below threshold 4 1.8037446870905 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778825_s_at YDR316W-B.S1 TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// Ty ORF /// Ty ORF /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition 1.80362744591385 2166.61102294922 2546.08898925781 --- 6319 // Ty element transposition // inferred from sequence similarity 943 // retrotransposon nucleocapsid // inferred from sequence similarity 3723 // RNA binding // inferred from sequence similarity /// 3887 // DNA-directed DNA polymerase activity // inferred from sequence similarity /// 3964 // RNA-directed DNA polymerase activity // inferred from sequence similarity /// 4540 // ribonuclease activity // inferred from sequence similarity /// 5515 // protein binding // inferred from sequence similarity /// 8233 // peptidase activity // inferred from sequence similarity 2654.19873046875 2536.71142578125 1796.51062011719 2437.97924804688 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR316W-B /GEN=IPK1 /DB_XREF=GI:7839162 /SEG=NC_001136:+1096057,1101325 /DEF=TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /NOTE=Ydr316w-bp; go_component: retrotransposon nucleocapsid [goid GO:0000943] [evidence ISS] [pmid 9582191]; go_function: DNA-directed DNA polymerase activity [goid GO:0003887] [evidence ISS] [pmid 9582191]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 9582191]; go_function: RNA-directed DNA polymerase activity [goid GO:0003964] [evidence ISS] [pmid 9582191]; go_function: peptidase activity [goid GO:0008233] [evidence ISS] [pmid 9582191]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 9582191]; go_function: ribonuclease activity [goid GO:0004540] [evidence ISS] [pmid 9582191]; go_process: Ty element transposition [goid GO:0006319] [evidence ISS] [pmid 9582191] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.60000002384186 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.70000004768372 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.79999995231628 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.5 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.59999990463257 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.70000004768372 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.79999995231628 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.90000009536743 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 4.59999990463257 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.69999980926514 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.80000019073486 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.90000009536743 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 6.30000019073486 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 7.90000009536743 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 9.19999980926514 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 9.5 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 7.59999990463257 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 7.80000019073486 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.39999961853027 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.5 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.69999980926514 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.89999961853027 --- S0002147 // YBL005W-B SGDID:S0002147, Chr II from 221333-222637,222639-226601, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0002155 // YBR012W-B SGDID:S0002155, Chr II from 259867-261171,261173-265138, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007399 // YDR316W-B SGDID:S0007399, Chr IV from 1096059-1097363,1097365-1101327, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0000962 // YER160C SGDID:S0000962, Chr V from 498119-496818,496816-492851, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007406 // YGR027W-B SGDID:S0007406, Chr VII from 536061-537365,537367-541329, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007368 // YGR161C-D SGDID:S0007368, Chr VII from 823020-821716,821714-817752, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0003534 // YHR214C-B SGDID:S0003534, Chr VIII from 549345-547930,547928-543963, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0003790 // YJR029W SGDID:S0003790, Chr X from 478258-479558,479560-483526, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007225 // YLR035C-A SGDID:S0007225, Chr XII from 218908-215441, reverse complement, Ty ORF // sgd // 11 // --- /// S0004508 // YML045W SGDID:S0004508, Chr XIII from 184461-185765,185767-189729, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0004648 // YMR045C SGDID:S0004648, Chr XIII from 362626-361322,361320-357358, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0004653 // YMR050C SGDID:S0004653, Chr XIII from 378324-377020,377018-373056, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007387 // YNL284C-B SGDID:S0007387, Chr XIV from 102230-100926,100924-96962, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007352 // YOR142W-B SGDID:S0007352, Chr XV from 595112-596416,596418-600380, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007362 // YPR158C-D SGDID:S0007362, Chr XVI from 856253-854949,854947-850985, reverse complement, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// S0007364 // YPR158W-B SGDID:S0007364, Chr XVI from 844705-846009,846011-849976, one base removed to allow translational frameshift, Ty ORF // sgd // 11 // --- /// GENSCAN00000021135 // cdna:Genscan chromosome:SGD1:II:223134:226601:1 // ensembl // 11 // --- /// GENEFINDER00000022184 // cdna:GeneFinder chromosome:SGD1:II:223134:226601:1 // ensembl // 11 // --- /// GENSCAN00000021149 // cdna:Genscan chromosome:SGD1:II:261668:265138:1 // ensembl // 11 // --- /// GENEFINDER00000022155 // cdna:GeneFinder chromosome:SGD1:II:261668:265138:1 // ensembl // 11 // --- /// GENEFINDER00000023497 // cdna:GeneFinder chromosome:SGD1:IV:1097860:1101327:1 // ensembl // 11 // --- /// GENSCAN00000025346 // cdna:Genscan chromosome:SGD1:IV:1097860:1101327:1 // ensembl // 11 // --- /// GENSCAN00000016938 // cdna:Genscan chromosome:SGD1:V:492851:496318:-1 // ensembl // 11 // --- /// GENEFINDER00000019765 // cdna:GeneFinder chromosome:SGD1:V:492851:496318:-1 // ensembl // 11 // --- /// GENSCAN00000019361 // cdna:Genscan chromosome:SGD1:VII:537862:541329:1 // ensembl // 11 // --- /// GENEFINDER00000021411 // cdna:GeneFinder chromosome:SGD1:VII:537862:541329:1 // ensembl // 11 // --- /// GENSCAN00000019466 // cdna:Genscan chromosome:SGD1:VII:817752:821219:-1 // ensembl // 11 // --- /// GENEFINDER00000021746 // cdna:GeneFinder chromosome:SGD1:VII:817752:820817:-1 // ensembl // 11 // --- /// GENSCAN00000016737 // cdna:Genscan chromosome:SGD1:VIII:543963:547430:-1 // ensembl // 11 // --- /// GENEFINDER00000020223 // cdna:GeneFinder chromosome:SGD1:VIII:543963:547430:-1 // ensembl // 11 // --- /// GENSCAN00000024155 // cdna:Genscan chromosome:SGD1:X:480059:483526:1 // ensembl // 11 // --- /// GENEFINDER00000024293 // cdna:GeneFinder chromosome:SGD1:X:480059:483526:1 // ensembl // 11 // --- /// GENSCAN00000017848 // cdna:Genscan chromosome:SGD1:XII:215441:218908:-1 // ensembl // 11 // --- /// GENEFINDER00000024644 // cdna:GeneFinder chromosome:SGD1:XII:215441:218908:-1 // ensembl // 11 // --- /// GENSCAN00000018680 // cdna:Genscan chromosome:SGD1:XIII:186262:189729:1 // ensembl // 11 // --- /// GENEFINDER00000021795 // cdna:GeneFinder chromosome:SGD1:XIII:186262:189729:1 // ensembl // 11 // --- /// GENSCAN00000018752 // cdna:Genscan chromosome:SGD1:XIII:357358:360825:-1 // ensembl // 11 // --- /// GENEFINDER00000021925 // cdna:GeneFinder chromosome:SGD1:XIII:357358:360423:-1 // ensembl // 11 // --- /// GENSCAN00000018757 // cdna:Genscan chromosome:SGD1:XIII:373056:376523:-1 // ensembl // 11 // --- /// GENEFINDER00000021935 // cdna:GeneFinder chromosome:SGD1:XIII:373056:376523:-1 // ensembl // 11 // --- /// GENSCAN00000019813 // cdna:Genscan chromosome:SGD1:XIV:96962:100429:-1 // ensembl // 11 // --- /// GENEFINDER00000020607 // cdna:GeneFinder chromosome:SGD1:XIV:96962:100429:-1 // ensembl // 11 // --- /// GENSCAN00000017569 // cdna:Genscan chromosome:SGD1:XV:596913:600380:1 // ensembl // 11 // --- /// GENEFINDER00000022561 // cdna:GeneFinder chromosome:SGD1:XV:597315:600380:1 // ensembl // 11 // --- /// GENSCAN00000017303 // cdna:Genscan chromosome:SGD1:XVI:846506:849976:1 // ensembl // 11 // --- /// GENEFINDER00000020794 // cdna:GeneFinder chromosome:SGD1:XVI:846506:849976:1 // ensembl // 11 // --- /// GENSCAN00000017304 // cdna:Genscan chromosome:SGD1:XVI:850985:854452:-1 // ensembl // 11 // --- /// GENEFINDER00000020865 // cdna:GeneFinder chromosome:SGD1:XVI:850985:854452:-1 // ensembl // 11 // --- /// YBL005W-B // cdna:known chromosome:SGD1:II:221333:226601:1 gene:YBL005W-B // ensembl // 11 // --- /// YBR012W-B // cdna:known chromosome:SGD1:II:259867:265138:1 gene:YBR012W-B // ensembl // 11 // --- /// YDR316W-B // cdna:known chromosome:SGD1:IV:1096059:1101327:1 gene:YDR316W-B // ensembl // 11 // --- /// YER160C // cdna:known chromosome:SGD1:V:492851:498119:-1 gene:YER160C // ensembl // 11 // --- /// YGR027W-B // cdna:known chromosome:SGD1:VII:536061:541329:1 gene:YGR027W-B // ensembl // 11 // --- /// YGR161C-D // cdna:known chromosome:SGD1:VII:817752:823020:-1 gene:YGR161C-D // ensembl // 11 // --- /// YHR214C-B // cdna:known chromosome:SGD1:VIII:543963:549345:-1 gene:YHR214C-B // ensembl // 11 // --- /// YJR029W // cdna:known chromosome:SGD1:X:478258:483526:1 gene:YJR029W // ensembl // 11 // --- /// YLR035C-A // cdna:known chromosome:SGD1:XII:215441:218908:-1 gene:YLR035C-A // ensembl // 11 // --- /// YML045W // cdna:known chromosome:SGD1:XIII:184461:189729:1 gene:YML045W // ensembl // 11 // --- /// YMR045C // cdna:known chromosome:SGD1:XIII:357358:362626:-1 gene:YMR045C // ensembl // 11 // --- /// YMR050C // cdna:known chromosome:SGD1:XIII:373056:378324:-1 gene:YMR050C // ensembl // 11 // --- /// YNL284C-B // cdna:known chromosome:SGD1:XIV:96962:102230:-1 gene:YNL284C-B // ensembl // 11 // --- /// YOR142W-B // cdna:known chromosome:SGD1:XV:595112:600380:1 gene:YOR142W-B // ensembl // 11 // --- /// YPR158W-B // cdna:known chromosome:SGD1:XVI:844705:849976:1 gene:YPR158W-B // ensembl // 11 // --- /// YPR158C-D // cdna:known chromosome:SGD1:XVI:850985:856253:-1 gene:YPR158C-D // ensembl // 11 // --- --- No cerevisiae_gene -1.80362744591385 -1.04631480880854 -1.27104997146111 -1.47741889235011 -1.08868799133343 Max fold change below threshold 4 1.80362744591385 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778955_at YOR244W.S1 Histone acetyltransferase catalytic subunit of the native multisubunit complex (NuA4) that acetylates four conserved internal lysines of histone H4 N-terminal tail; required for cell cycle progression 1.80348930150245 1314.83294677734 887.241119384766 ESA1 74 // regulation of cell cycle // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 16573 // histone acetylation // inferred from direct assay 123 // histone acetyltransferase complex // traceable author statement /// 123 // histone acetyltransferase complex // inferred from direct assay /// 43189 // H4/H2A histone acetyltransferase complex // inferred from physical interaction 4402 // histone acetyltransferase activity // inferred from direct assay 804.544921875 1178.677734375 1450.98815917969 969.937316894531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR244W /GEN=ESA1 /DB_XREF=GI:6324818 /SEG=NC_001147:+792531,793868 /DEF=Histone acetyltransferase catalytic subunit of the native multisubunit complex (NuA4) that acetylates four, conserved internal lysines of histone H4 N-terminal tail; required for cell cycle progression /NOTE=Esa1p; go_component: histone acetyltransferase complex [goid GO:0000123] [evidence TAS] [pmid 10082517]; go_component: histone acetyltransferase complex [goid GO:0000123] [evidence IDA] [pmid 11036083]; go_function: histone acetyltransferase activity [goid GO:0004402] [evidence IDA] [pmid 10082517]; go_process: histone acetylation [goid GO:0016573] [evidence IDA] [pmid 10082517]; go_process: regulation of cell cycle [goid GO:0000074] [evidence IMP] [pmid 10082517]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP] [pmid 11036083] --- --- --- --- --- --- S0005770 // ESA1 SGDID:S0005770, Chr XV from 792531-793868, Verified ORF // sgd // 11 // --- /// GENSCAN00000017669 // cdna:Genscan chromosome:SGD1:XV:792531:793868:1 // ensembl // 11 // --- /// GENEFINDER00000022751 // cdna:GeneFinder chromosome:SGD1:XV:792531:793868:1 // ensembl // 11 // --- /// YOR244W // cdna:known chromosome:SGD1:XV:792531:793868:1 gene:YOR244W // ensembl // 11 // --- --- No cerevisiae_gene -1.00614917690518 1.46502414262721 1.42341604216281 1.80348930150245 1.2055726044906 Max fold change below threshold 4 1.80348930150245 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779824_at YPL099C.S1 The authentic, non-tagged protein was localized to the mitochondria 1.80348091565235 436.488739013672 315.876800537109 --- --- 5739 // mitochondrion // inferred from direct assay --- 285.823638916016 397.926605224609 475.050872802734 345.929962158203 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL099C /GEN=ATG21 /DB_XREF=GI:6325158 /SEG=NC_001148:-363515,364063 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ypl099cp --- --- --- --- --- S0006020 // span:108-127 // numtm:1 S0006020 // FMP14 SGDID:S0006020, Chr XVI from 364065-363517, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YPL099C // cdna:known chromosome:SGD1:XVI:363517:364065:-1 gene:YPL099C // ensembl // 11 // --- --- No cerevisiae_gene 1.33965348009886 1.39221026900974 1.80348091565235 1.66204193118652 1.21029164512124 Max fold change below threshold 4 1.80348091565235 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776069_at YDR359C.S1 Component of the NuA4 histone acetyltransferase complex 1.80306254050528 214.915267944336 351.647567749023 VID21 16568 // chromatin modification // inferred from physical interaction 123 // histone acetyltransferase complex // inferred from physical interaction /// 43189 // H4/H2A histone acetyltransferase complex // inferred from physical interaction --- 305.994812011719 169.708374023438 260.122161865234 397.300323486328 0.00122069998178631 0.00415039015933871 0.00415039015933871 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR359C /GEN=VID21 /DB_XREF=GI:42742058 /SEG=NC_001136:-1191925,1194873 /DEF=Component of the NuA4 histone acetyltransferase complex /NOTE=Vid21p; go_component: histone acetyltransferase complex [goid GO:0000123] [evidence IPI] [pmid 12672825]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin modification [goid GO:0016568] [evidence IPI] [pmid 12672825] --- --- --- --- scop // a.4.1.Myb // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb // 0.034000001847744 --- S0002767 // VID21 SGDID:S0002767, Chr IV from 1194875-1191927, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023509 // cdna:GeneFinder chromosome:SGD1:IV:1191927:1194875:-1 // ensembl // 11 // --- /// GENSCAN00000025383 // cdna:Genscan chromosome:SGD1:IV:1191927:1194875:-1 // ensembl // 11 // --- /// YDR359C // cdna:known chromosome:SGD1:IV:1191927:1194875:-1 gene:YDR359C // ensembl // 11 // --- --- No cerevisiae_gene -1.43301732697004 -1.80306254050528 1.00131167971398 -1.17635041096671 1.29838908337803 Max fold change below threshold 4 1.80306254050528 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778409_at YHR111W.S1 Protein that activates Urm1p before its conjugation to proteins (urmylation); one target is the thioredoxin peroxidase Ahp1p, suggesting a role of urmylation in the oxidative stress response 1.80303754276862 476.094848632813 610.741790771484 UBA4 6464 // protein modification // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 42292 // URM1 activating enzyme activity // inferred from direct assay 599.504150390625 332.496765136719 619.692932128906 621.979431152344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR111W /GEN=UBA4 /DB_XREF=GI:6321903 /SEG=NC_001140:+333074,334396 /DEF=Protein that activates Urm1p before its conjugation to proteins (urmylation); one target is the thioredoxin peroxidase Ahp1p, suggesting a role of urmylation in the oxidative stress response /NOTE=Uba4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: URM1 activating enzyme activity [goid GO:0042292] [evidence IDA] [pmid 10713047]; go_process: protein modification [goid GO:0006464] [evidence IDA] [pmid 10713047] --- --- --- --- scop // a.4.5.C-terminal fragment of elongation factor SelB // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; C-terminal fragment of elongation factor SelB // 1.5 --- S0001153 // UBA4 SGDID:S0001153, Chr VIII from 333074-334396, Verified ORF // sgd // 11 // --- /// GENSCAN00000016648 // cdna:Genscan chromosome:SGD1:VIII:333074:334396:1 // ensembl // 11 // --- /// GENEFINDER00000020190 // cdna:GeneFinder chromosome:SGD1:VIII:333074:334396:1 // ensembl // 11 // --- /// YHR111W // cdna:known chromosome:SGD1:VIII:333074:334396:1 gene:YHR111W // ensembl // 11 // --- --- No cerevisiae_gene -1.20686381744062 -1.80303754276862 1.68664584460872 1.03367579978408 1.03748978342698 Max fold change below threshold 4 1.80303754276862 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773565_at YOL143C.S1 Lumazine synthase (6,7-dimethyl-8-ribityllumazine synthase, also known as DMRL synthase); catalyzes synthesis of immediate precursor to riboflavin 1.80267985978656 1431.3349609375 1994.49176025391 RIB4 9231 // riboflavin biosynthesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 906 // 6,7-dimethyl-8-ribityllumazine synthase activity // inferred from genetic interaction /// 906 // 6,7-dimethyl-8-ribityllumazine synthase activity // inferred from sequence similarity 2007.224609375 1113.46704101563 1749.20288085938 1981.75891113281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL143C /GEN=RIB4 /DB_XREF=GI:6324429 /SEG=NC_001147:-54593,55102 /DEF=catalyzes synthesis of immediate precursor to riboflavin, also known as Lumazine Synthase /NOTE=Rib4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: 6,7-dimethyl-8-ribityllumazine synthase activity [goid GO:0000906] [evidence IGI,ISS] [pmid 7559556]; go_process: vitamin B2 biosynthesis [goid GO:0009231] [evidence IMP] [pmid 5366000] --- --- --- --- --- --- S0005503 // RIB4 SGDID:S0005503, Chr XV from 55102-54593, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017355 // cdna:Genscan chromosome:SGD1:XV:54593:55102:-1 // ensembl // 11 // --- /// GENEFINDER00000022738 // cdna:GeneFinder chromosome:SGD1:XV:54593:55102:-1 // ensembl // 11 // --- /// YOL143C // cdna:known chromosome:SGD1:XV:54593:55102:-1 gene:YOL143C // ensembl // 11 // --- --- No cerevisiae_gene -1.23288468469644 -1.80267985978656 -1.15202810516372 -1.14750817720404 -1.01285004855996 Max fold change below threshold 4 1.80267985978656 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771468_at YMR123W.S1 Protein of unknown function; overproduction confers resistance to Pichia farinosa killer toxin 1.8026061274052 809.069030761719 1256.39996337891 PKR1 --- 5783 // endoplasmic reticulum // inferred from direct assay --- 1247.07568359375 691.818176269531 926.319885253906 1265.72424316406 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR123W /GEN=PKR1 /DB_XREF=GI:6323771 /SEG=NC_001145:+513592,513960 /DEF=Pichia farinosa Killer toxin Resistance /NOTE=Pkr1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004730 // span:20-42,49-67 // numtm:2 S0004730 // PKR1 SGDID:S0004730, Chr XIII from 513592-513960, Verified ORF // sgd // 11 // --- /// GENSCAN00000018817 // cdna:Genscan chromosome:SGD1:XIII:513592:513960:1 // ensembl // 11 // --- /// GENEFINDER00000021781 // cdna:GeneFinder chromosome:SGD1:XIII:513592:513960:1 // ensembl // 11 // --- /// YMR123W // cdna:known chromosome:SGD1:XIII:513592:513960:1 gene:YMR123W // ensembl // 11 // --- --- No cerevisiae_gene -1.00606670579569 -1.8026061274052 -1.37622773507245 -1.34626893306077 1.01495383144395 Max fold change below threshold 4 1.8026061274052 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776913_at YOL057W.S1 Putative metalloprotease 1.80239624740349 484.614028930664 613.385467529297 --- 6508 // proteolysis and peptidolysis // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4222 // metalloendopeptidase activity // inferred from sequence similarity 657.900207519531 365.014190673828 604.2138671875 568.870727539063 0.00195312988944352 0.00122069998178631 0.00292969006113708 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL057W /GEN=ARG1 /DB_XREF=GI:6324515 /SEG=NC_001147:+220765,222900 /DEF=Hypothetical ORF /NOTE=Yol057wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005418 // YOL057W SGDID:S0005418, Chr XV from 220765-222900, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017423 // cdna:Genscan chromosome:SGD1:XV:220765:222900:1 // ensembl // 11 // --- /// GENEFINDER00000022543 // cdna:GeneFinder chromosome:SGD1:XV:220765:222900:1 // ensembl // 11 // --- /// YOL057W // cdna:known chromosome:SGD1:XV:220765:222900:1 gene:YOL057W // ensembl // 11 // --- --- No cerevisiae_gene -1.10281541804122 -1.80239624740349 -1.14472702564959 -1.08885320785822 -1.15650212899091 Max fold change below threshold 4 1.80239624740349 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773227_at YDR437W.S1 Subunit of GPI-GlcNAc transferase involved in synthesis of N-acetylglucosaminyl phosphatidylinositol (GlcNAc-PI), which is the first intermediate in glycosylphosphatidylinositol (GPI) anchor synthesis, shares similarity with mammalian PIG-P 1.80232352714996 25.2582778930664 40.4020004272461 --- 6506 // GPI anchor biosynthesis // inferred from curator 506 // glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex // inferred from sequence similarity /// 506 // glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex // traceable author statement /// 5635 // nuclear membrane // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay 8194 // UDP-glycosyltransferase activity // inferred from curator 38.5431785583496 22.8740139007568 27.642541885376 42.2608222961426 0.000244141003349796 0.014160200022161 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR437W /GEN=PPZ2 /DB_XREF=GI:6320645 /SEG=NC_001136:+1337340,1337762 /DEF=Protein required for cell viability /NOTE=Ydr437wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14690591]; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002845 // span:7-29,53-75 // numtm:2 S0002845 // YDR437W SGDID:S0002845, Chr IV from 1337342-1337764, Uncharacterized ORF // sgd // 11 // --- /// YDR437W // cdna:known chromosome:SGD1:IV:1337342:1337764:1 gene:YDR437W // ensembl // 11 // --- --- No cerevisiae_gene 1.80232352714996 -1.68502033467219 1.57651583359751 -1.39434277492189 1.09645399982165 Max fold change below threshold 4 1.80232352714996 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1770423_at YOR094W.S1 Glucose-repressible ADP-ribosylation factor, GTPase of the Ras superfamily involved in development of polarity 1.80220800962797 386.537750244141 713.198181152344 ARF3 6886 // intracellular protein transport // inferred from sequence similarity /// 30036 // actin cytoskeleton organization and biogenesis // inferred from genetic interaction --- 3924 // GTPase activity // inferred from sequence similarity 682.931457519531 378.941528320313 394.133972167969 743.464904785156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244140625 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR094W /GEN=ARF3 /DB_XREF=GI:6324668 /SEG=NC_001147:+502795,503346 /DEF=GTP-binding ADP-ribosylation factor /NOTE=Arf3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: GTPase activity [goid GO:0003924] [evidence ISS] [pmid 8063710]; go_process: intracellular protein transport [goid GO:0006886] [evidence ISS] [pmid 8063710] --- --- --- --- --- --- S0005620 // ARF3 SGDID:S0005620, Chr XV from 502795-503346, Verified ORF // sgd // 11 // --- /// L28996 // Saccharomyces cerevisiae (yARF3) mRNA, complete cds. // gb // 11 // --- /// GENEFINDER00000022702 // cdna:GeneFinder chromosome:SGD1:XV:502795:503346:1 // ensembl // 11 // --- /// YOR094W // cdna:known chromosome:SGD1:XV:502795:503346:1 gene:YOR094W // ensembl // 11 // --- --- No cerevisiae_gene -1.00077017760684 -1.80220800962797 -1.13415717856996 -1.73273938748037 1.08863766136281 Max fold change below threshold 4 1.80220800962797 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778915_at YCR038C.S1 Silenced copy of A2, encoding a protein of with similarity to Alpha2p that is required along with A1p for inhibiting expression of the HO endonuclease in a/alpha HO/HO diploid cells with an active mating-type interconversion system /// GTP/GDP exchange factor for Rsr1p (Bud1p) required for both axial and bipolar budding patterns; mutants exhibit random budding in all cell types /// Homeobox-domain containing protein which acts with Mcm1p in haploid cells to repress a-specific genes; in diploid cells Alpha2p acts together with A1p to repress transcription of haploid-specific genes /// Silenced copy of ALPHA2, encoding a homeobox-domain containing protein that associates with Mcm1p in haploid cells to repress a-specific gene expression and interacts with A1p in diploid cells to repress haploid-specific gene expression /// Hypothetical protein 1.80209028036957 166.836158752441 120.223491668701 HMRA2 /// BUD5 /// MATALPHA2 /// HMLALPHA2 282 // bud site selection // traceable author statement /// 7120 // axial bud site selection // traceable author statement /// 7121 // bipolar bud site selection // traceable author statement /// 7124 // pseudohyphal growth // traceable author statement /// 7264 // small GTPase mediated signal transduction // traceable author statement /// 6357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 7532 // regulation of transcription, mating-type specific // traceable author statement /// 7535 // donor selection // traceable author statement 131 // incipient bud site // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 5634 // nucleus // traceable author statement 4871 // signal transducer activity // traceable author statement /// 5085 // guanyl-nucleotide exchange factor activity // traceable author statement /// 5088 // Ras guanyl-nucleotide exchange factor activity // traceable author statement /// 3714 // transcription corepressor activity // traceable author statement 111.389549255371 132.938293457031 200.734024047852 129.057434082031 0.000732421991415322 0.00805663969367743 0.00415039015933871 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR038C /GEN=BUD5 /DB_XREF=GI:10383799 /SEG=NC_001135:-197616,199544 /DEF=GTP/GDP exchange factor for Rsr1p (Bud1p) required for both axial and bipolar budding patterns; mutants exhibit random budding in all cell types /NOTE=Bud5p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 11313501]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 11313501]; go_function: Ras guanyl-nucleotide exchange factor activity [goid GO:0005088] [evidence TAS] [pmid 9891811]; go_function: guanyl-nucleotide exchange factor activity [goid GO:0005085] [evidence TAS] [pmid 8234337]; go_function: signal transducer activity [goid GO:0004871] [evidence TAS] [pmid 9891811]; go_process: axial budding [goid GO:0007120] [evidence TAS] [pmid 8371782]; go_process: bud site selection [goid GO:0000282] [evidence TAS] [pmid 8234337]; go_process: polar budding [goid GO:0007121] [evidence TAS] [pmid 8371782]; go_process: pseudohyphal growth [goid GO:0007124] [evidence TAS] [pmid 9339344]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence TAS] [pmid 9891811] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 2.99999988914261E-28 /// scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 8.00000021796161E-27 --- S0000634 // BUD5 SGDID:S0000634, Chr III from 199544-197616, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022487 // cdna:Genscan chromosome:SGD1:III:197616:199232:-1 // ensembl // 11 // --- /// GENEFINDER00000023294 // cdna:GeneFinder chromosome:SGD1:III:197616:199544:-1 // ensembl // 11 // --- /// YCR038C // cdna:known chromosome:SGD1:III:197616:199544:-1 gene:YCR038C // ensembl // 11 // --- --- No cerevisiae_gene 1.40108894140164 1.19345391327743 1.77854789685324 1.80209028036957 1.15861348703508 Max fold change below threshold 4 1.80209028036957 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sc-25SrRNA-M_at AFFX-r2-Sc-25SrRNA-M Identified by fungal homology and RT-PCR 1.80162695672244 585.477081298828 473.028091430664 --- --- --- --- 602.681274414063 836.43359375 334.520568847656 343.374908447266 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=Z73326 SGD:YLR154C 25S ribosomal RNA corresponds to complement of 4212-7605 in Z73326 (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- YLR154C-G // cdna:known chromosome:SGD1:XII:462523:462672:-1 gene:YLR154C-G // ensembl // 0 // chr12:462522-462672(-) /// D83562 // Saccharomyces cerevisiae 26S ribosomal rRNA, partial sequence. // gb // 0 // chr12:462482-462707(-) /// L10682 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 25S ribosomal RNA, partial. // gb // 0 // chr12:462486-462734(-) /// L19652 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:462493-462760(-) /// D25212 // Yeast (strain IFO 2376) 26S rRNA, partial sequence. // gb // 0 // chr12:462482-462707(-) /// L21852 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:462492-462773(-) /// S0028561 // YLR154C-G SGDID:S0028561, Chr XII from 462672-462523, reverse complement, Uncharacterized ORF // sgd // 0 // chr12:462522-462672(-) /// YLR154C-G // cdna:known chromosome:SGD1:XII:462523:462672:-1 gene:YLR154C-G // ensembl // 0 // chr12:453385-453535(-) /// D83562 // Saccharomyces cerevisiae 26S ribosomal rRNA, partial sequence. // gb // 0 // chr12:453345-453570(-) /// L10682 // Saccharomyces cerevisiae (NRRL Y-12632 = CBS 1171) 25S ribosomal RNA, partial. // gb // 0 // chr12:453349-453597(-) /// L19652 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:453356-453623(-) /// D25212 // Yeast (strain IFO 2376) 26S rRNA, partial sequence. // gb // 0 // chr12:453345-453570(-) /// L21852 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:453355-453636(-) /// S0028561 // YLR154C-G SGDID:S0028561, Chr XII from 462672-462523, reverse complement, Uncharacterized ORF // sgd // 0 // chr12:453385-453535(-) --- AFFX_control cerevisiae_gene -1.80112531000838 1.38785396072442 -1.13097382250764 -1.80162695672244 -1.75516981464771 Max fold change below threshold 4 1.80162695672244 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776231_at SPAC1B3.10c.S1 --- 1.80100318459217 --- --- --- --- 1.15640735626221 0.642090678215027 1.00417637825012 1.62315762042999 0.962401986122131 0.989257991313934 0.888427972793579 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1B3.10c /DEF=SEL1 repeat protein --- --- --- --- --- --- SPAC1B3.10c // |||SEL1 repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.49789382402498 -1.80100318459217 1.27353883987956 -1.1515978480567 1.40362097459881 Max fold change below threshold 0 1.80100318459217 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773091_at YIL018W.S1 Protein component of the large (60S) ribosomal subunit, identical to Rpl2Ap and has similarity to E. coli L2 and rat L8 ribosomal proteins; expression is upregulated at low temperatures /// Protein component of the large (60S) ribosomal subunit, identical to Rpl2Bp and has similarity to E. coli L2 and rat L8 ribosomal proteins 1.80095315616924 2770.71716308594 3979.78515625 RPL2B /// RPL2A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 4389.95654296875 2972.89794921875 2568.53637695313 3569.61376953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL018W /GEN=RPL2B /DB_XREF=GI:6322171 /SEG=NC_001141:+316766,317930 /DEF=Protein component of the large (60S) ribosomal subunit, identical to Rpl2Ap and has similarity to E. coli L2 and rat L8 ribosomal proteins; expression is upregulated at low temperatures /NOTE=Rpl2bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0001280 // RPL2B SGDID:S0001280, Chr IX from 316766-316769,317170-317930, intron sequence removed, Verified ORF // sgd // 11 // --- /// U17360 // Saccharomyces cerevisiae ribosomal protein YL6b mRNA, partial cds. // gb // 11 // --- /// GENEFINDER00000019042 // cdna:GeneFinder chromosome:SGD1:IX:315091:317930:1 // ensembl // 11 // --- /// YIL018W // cdna:known chromosome:SGD1:IX:316766:317930:1 gene:YIL018W // ensembl // 11 // --- --- No cerevisiae_gene 1.03407380416347 -1.47665901014947 -1.80095315616924 -1.70912765042333 -1.22981275465699 Max fold change below threshold 4 1.80095315616924 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775619_at YML053C.S1 Hypothetical protein 1.80039624373293 4258.01440429688 2817.18762207031 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 2972.740234375 5352.1103515625 3163.91845703125 2661.63500976563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML053C /GEN=CYB2 /DB_XREF=GI:6323588 /SEG=NC_001145:-169116,169754 /DEF=Hypothetical ORF /NOTE=Yml053cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004517 // YML053C SGDID:S0004517, Chr XIII from 169754-169116, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YML053C // cdna:known chromosome:SGD1:XIII:169116:169754:-1 gene:YML053C // ensembl // 11 // --- GENSCAN00000018672 // ensembl // 6 // Cross Hyb Matching Probes /// GENEFINDER00000021854 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 1.06355109546839 1.80039624373293 -1.09975506393726 1.06431043669594 -1.11688500619654 Max fold change below threshold 4 1.80039624373293 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769806_at YMR226C.S1 NADP(+)-dependent dehydrogenase; acts on serine, L-allo-threonine, and other 3-hydroxy acids 1.80031479242863 5281.98608398438 5644.78662109375 --- 8152 // metabolism // inferred from curator 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 16620 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor // inferred from direct assay 6291.23828125 5608.8173828125 4955.15478515625 4998.3349609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR226C /GEN=MRPL44 /DB_XREF=GI:6323882 /SEG=NC_001145:-721592,722395 /DEF=NADP(+)-dependent dehydrogenase; acts on serine, L-allo-threonine, and other 3-hydroxy acids /NOTE=Ymr226cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [goid GO:0016620] [evidence IDA] [pmid 12535615]; go_process: L-serine metabolism [goid GO:0006563] [evidence IC] [pmid 12535615] --- --- --- --- --- --- S0004839 // YMR226C SGDID:S0004839, Chr XIII from 722395-721592, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018906 // cdna:Genscan chromosome:SGD1:XIII:721592:722395:-1 // ensembl // 11 // --- /// GENEFINDER00000022085 // cdna:GeneFinder chromosome:SGD1:XIII:721592:722395:-1 // ensembl // 11 // --- /// YMR226C // cdna:known chromosome:SGD1:XIII:721592:722395:-1 gene:YMR226C // ensembl // 11 // --- --- No cerevisiae_gene -1.80031479242863 -1.1216693024324 -1.0864991905935 -1.26963506772708 -1.25866680212844 Max fold change below threshold 4 1.80031479242863 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771139_at YIL004C.S1 Type II membrane protein required for vesicular transport between the endoplasmic reticulum and Golgi complex; v-SNARE with similarity to synaptobrevins 1.79953265738403 194.935005187988 294.981338500977 BET1 6888 // ER to Golgi transport // inferred from physical interaction /// 6888 // ER to Golgi transport // inferred from mutant phenotype /// 6890 // retrograde transport, Golgi to ER // inferred from direct assay 5789 // endoplasmic reticulum membrane // inferred from direct assay /// 30138 // COPII-coated vesicle // inferred from direct assay 5485 // v-SNARE activity // inferred from mutant phenotype 286.477355957031 159.195419311523 230.674591064453 303.485321044922 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL004C /GEN=BET1 /DB_XREF=GI:6322187 /SEG=NC_001141:-347943,348502 /DEF=Type II membrane protein required for vesicular transport between the endoplasmic reticulum and Golgi complex; v-SNARE with similarity to synaptobrevins /NOTE=Bet1p; go_component: COPII-coated vesicle [goid GO:0030138] [evidence IDA] [pmid 11157978]; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 1396561]; go_function: v-SNARE activity [goid GO:0005485] [evidence IMP] [pmid 3312234]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IPI] [pmid 11157978]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 3312234]; go_process: retrograde transport, Golgi to ER [goid GO:0006890] [evidence IDA] [pmid 9813082] --- --- --- --- --- S0001266 // span:119-141 // numtm:1 S0001266 // BET1 SGDID:S0001266, Chr IX from 348502-348492,348360-347943, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YIL004C // cdna:known chromosome:SGD1:IX:347943:348502:-1 gene:YIL004C // ensembl // 11 // --- --- No cerevisiae_gene -1.07956245662966 -1.79953265738403 1.36060034365616 -1.24191119028357 1.05936931744945 Max fold change below threshold 4 1.79953265738403 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771036_at SPCC757.03c.S1 --- 1.79933358616551 --- --- --- --- 10.782320022583 11.4768390655518 17.3996906280518 5.99239635467529 0.0561522990465164 0.111571997404099 0.06494140625 0.0676269978284836 M A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC757.03c /DEF=conserved fungal protein --- --- --- --- --- --- SPCC757.03c // |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.66852040901033 1.06441276474025 -1.34491599034751 1.61372418845007 -1.79933358616551 Max fold change below threshold 4 1.79933358616551 Max fold change below threshold MAAAMA No 4 0 MAMA 2 0 2 No No x = 1
1771489_at YOL132W.S1 Putative 1,3-beta-glucanosyltransferase, has similarity to Gas1p; localizes to the cell wall 1.79891235249129 71.6785545349121 74.8689613342285 GAS4 --- 9277 // cell wall (sensu Fungi) // inferred from direct assay 42124 // 1,3-beta-glucanosyltransferase activity // inferred from sequence similarity 62.4073486328125 87.1770782470703 56.1800308227539 87.3305740356445 0.000732421991415322 0.000732421991415322 0.00292969006113708 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL132W /GEN=GAS4 /DB_XREF=GI:6324440 /SEG=NC_001147:+71299,72714 /DEF=Protein of unknown function, localizes to the cell wall /NOTE=Gas4p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005492 // span:448-470 // numtm:1 S0005492 // GAS4 SGDID:S0005492, Chr XV from 71299-72714, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022633 // cdna:GeneFinder chromosome:SGD1:XV:71299:72747:1 // ensembl // 11 // --- /// YOL132W // cdna:known chromosome:SGD1:XV:71299:72714:1 gene:YOL132W // ensembl // 11 // --- --- No cerevisiae_gene 1.79891235249129 1.39690405307868 -1.24560600179474 -1.11084575282106 1.39936363182922 Max fold change below threshold 4 1.79891235249129 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772624_at YNL005C.S1 Mitochondrial ribosomal protein of the large subunit 1.79890413577095 1022.45617675781 600.975372314453 MRP7 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction 48 // peptidyltransferase activity // inferred from sequence similarity /// 3735 // structural constituent of ribosome // traceable author statement 570.983337402344 1017.76806640625 1027.14428710938 630.967407226563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL005C /GEN=MRP7 /DB_XREF=GI:6324323 /SEG=NC_001146:-621312,622427 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrp7p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_function: peptidyltransferase activity [goid GO:0000048] [evidence ISS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0004950 // MRP7 SGDID:S0004950, Chr XIV from 622428-621313, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020034 // cdna:Genscan chromosome:SGD1:XIV:621313:622428:-1 // ensembl // 11 // --- /// YNL005C // cdna:known chromosome:SGD1:XIV:621313:622428:-1 gene:YNL005C // ensembl // 11 // --- --- No cerevisiae_gene 1.20262349798092 1.78248295482059 1.05376477647066 1.79890413577095 1.10505397600062 Max fold change below threshold 4 1.79890413577095 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769311_at YDL157C.S1 Hypothetical protein 1.79883204917497 455.356643676758 604.873870849609 --- --- 5739 // mitochondrion // inferred from direct assay --- 567.190979003906 459.981964111328 450.731323242188 642.556762695313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL157C /GEN=STE7 /DB_XREF=GI:6320044 /SEG=NC_001136:-174233,174589 /DEF=Hypothetical ORF /NOTE=Ydl157cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002316 // YDL157C SGDID:S0002316, Chr IV from 174589-174233, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDL157C // cdna:known chromosome:SGD1:IV:174233:174589:-1 gene:YDL157C // ensembl // 11 // --- --- No cerevisiae_gene 1.79883204917497 -1.23307221425454 1.35392613918411 -1.25837932656644 1.13287549781515 Max fold change below threshold 4 1.79883204917497 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776411_at SPBP4H10.13.S1 --- 1.79729323221914 --- --- --- --- 10.1480436325073 11.0081872940063 13.9829502105713 12.2618932723999 0.0375977009534836 0.111571997404099 0.014160200022161 0.0375977009534836 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP4H10.13 /GEN=rps2302 /DEF=40S ribosomal protein S23 --- --- --- --- --- --- SPBP4H10.13 // |rps2302|rps23-2|40S ribosomal protein S23|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.0545628769908 1.08475955491004 -1.79729323221914 1.37789614599011 1.20830119739742 Max fold change below threshold 4 1.79729323221914 Max fold change below threshold PAAAPP No 4 0 PAPP 1 3 0 No No 2 < x = 3
1770713_at YKL190W.S1 Calcineurin B; the regulatory subunit of calcineurin, a Ca++/calmodulin-regulated protein phosphatase which regulates Crz1p (a stress-response transcription factor), the other calcineurin subunit is encoded by CNA1 and/or CMP1 1.79700485561074 1092.45159912109 1812.32403564453 CNB1 754 // adaptation to pheromone during conjugation with cellular fusion // inferred from mutant phenotype /// 6873 // cell ion homeostasis // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from genetic interaction 5737 // cytoplasm // inferred from sequence similarity /// 5955 // calcineurin complex // inferred from physical interaction 4723 // calcium-dependent protein serine/threonine phosphatase activity // inferred from physical interaction /// 4723 // calcium-dependent protein serine/threonine phosphatase activity // inferred from sequence similarity /// 5509 // calcium ion binding // inferred from sequence similarity 1821.34777832031 1013.54638671875 1171.35681152344 1803.30029296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL190W /GEN=CNB1 /DB_XREF=GI:6322658 /SEG=NC_001143:+82952,83555 /DEF=Type 2B protein phosphatase; regulatory B subunit of calcineurin /NOTE=Cnb1p; go_component: calcineurin complex [goid GO:0005955] [evidence IPI] [pmid 10887154]; go_component: cytoplasm [goid GO:0005737] [evidence ISS] [pmid 1321337]; go_function: calcium-dependent protein serine/threonine phosphatase activity [goid GO:0004723] [evidence IPI,ISS] [pmid 1321337]; go_process: adaptation to pheromone during conjugation with cellular fusion [goid GO:0000754] [evidence IMP] [pmid 1321337]; go_process: cell ion homeostasis [goid GO:0006873] [evidence IMP] [pmid 8798496]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IGI,IMP] [pmid 7530227] --- --- --- --- --- --- S0001673 // CNB1 SGDID:S0001673, Chr XI from 82952-83003,83080-83555, intron sequence removed, Verified ORF // sgd // 11 // --- /// D10293 // Saccharomyces cerevisiae mRNA for calcineurin B homolog, complete cds. // gb // 11 // --- /// GENSCAN00000018275 // cdna:Genscan chromosome:SGD1:XI:83118:83555:1 // ensembl // 10 // --- /// YKL190W // cdna:known chromosome:SGD1:XI:82952:83555:1 gene:YKL190W // ensembl // 11 // --- --- No cerevisiae_gene -1.12130379980473 -1.79700485561074 -1.20088200813193 -1.5549043300918 -1.010008031065 Max fold change below threshold 4 1.79700485561074 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771209_at YKL122C.S1 Subunit of the signal recognition particle (SRP), which functions in protein targeting to the endoplasmic reticulum membrane; not found in mammalian SRP; forms a pre-SRP structure in the nucleolus that is translocated to the cytoplasm 1.79695775733896 846.531860351563 1162.88635253906 SRP21 6617 // SRP-dependent cotranslational protein-membrane targeting, signal sequence recognition // inferred from curator /// 45047 // protein-ER targeting // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5786 // signal recognition particle (sensu Eukaryota) // inferred from direct assay 5048 // signal sequence binding // inferred from physical interaction 1111.9951171875 993.580932617188 699.482788085938 1213.77758789063 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL122C /GEN=SRP21 /DB_XREF=GI:6322727 /SEG=NC_001143:-212141,212644 /DEF=part of the signal recognition particle (SRP) ribonucleoprotein (RNP) complex that functions in protein targeting to the endoplasmic reticulum (ER) membrane /NOTE=Srp21p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_component: signal recognition particle [goid GO:0005786] [evidence IDA] [pmid 7925282]; go_function: signal sequence binding [goid GO:0005048] [evidence IPI] [pmid 7925282]; go_process: protein-ER targeting [goid GO:0045047] [evidence IPI] [pmid 7925282] --- --- --- --- --- --- S0001605 // SRP21 SGDID:S0001605, Chr XI from 212644-212141, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023112 // cdna:GeneFinder chromosome:SGD1:XI:212141:212644:-1 // ensembl // 11 // --- /// YKL122C // cdna:known chromosome:SGD1:XI:212141:212644:-1 gene:YKL122C // ensembl // 11 // --- --- No cerevisiae_gene 1.79695775733896 -1.11917920391085 -1.02595630723196 -1.58973907024983 1.09153140074981 Max fold change below threshold 4 1.79695775733896 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773276_at YBR198C.S1 Subunit (90 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiation and in chromatin modification 1.79674117910226 1199.29440307617 1856.60412597656 TAF5 114 // G1-specific transcription in mitotic cell cycle // inferred from mutant phenotype /// 6325 // establishment and/or maintenance of chromatin architecture // inferred from physical interaction /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 6473 // protein amino acid acetylation // inferred from physical interaction /// 16568 // chromatin modification // traceable author statement /// 16573 // histone acetylation // traceable author statement 124 // SAGA complex // inferred from direct assay /// 5669 // transcription factor TFIID complex // traceable author statement /// 5669 // transcription factor TFIID complex // inferred from direct assay /// 46695 // SLIK (SAGA-like) complex // inferred from physical interaction 16251 // general RNA polymerase II transcription factor activity // traceable author statement 1832.05102539063 1019.65216064453 1378.93664550781 1881.1572265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR198C /GEN=TAF5 /DB_XREF=GI:6319675 /SEG=NC_001134:-616084,618480 /DEF=Subunit (90 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiation and in chromatin modification /NOTE=Taf5p; go_component: SAGA complex [goid GO:0000124] [evidence IDA] [pmid 9674426]; go_component: transcription factor TFIID complex [goid GO:0005669] [evidence TAS] [pmid 9118213]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9118213]; go_process: G1-specific transcription in mitotic cell cycle [goid GO:0000114] [evidence IMP] [pmid 9288741]; go_process: chromatin modification [goid GO:0016568] [evidence TAS] [pmid 10839822]; go_process: establishment and/or maintenance of chromatin architecture [goid GO:0006325] [evidence IPI] [pmid 9674426]; go_process: histone acetylation [goid GO:0016573] [evidence TAS] [pmid 10839822]; go_process: protein amino acid acetylation [goid GO:0006473] [evidence IPI] [pmid 9674426]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 9118213] --- --- --- --- scop // a.4.5.Replication terminator protein (RTP) // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Replication terminator protein (RTP) // 2.59999990463257 --- S0000402 // TAF5 SGDID:S0000402, Chr II from 618518-616122, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021298 // cdna:Genscan chromosome:SGD1:II:616122:618518:-1 // ensembl // 11 // --- /// GENEFINDER00000022199 // cdna:GeneFinder chromosome:SGD1:II:616122:618518:-1 // ensembl // 11 // --- /// YBR198C // cdna:known chromosome:SGD1:II:616122:618518:-1 gene:YBR198C // ensembl // 11 // --- --- No cerevisiae_gene -1.04602917796083 -1.79674117910226 -1.13254197615726 -1.32859695284691 1.02680394841154 Max fold change below threshold 4 1.79674117910226 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772947_at YOR312C.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl20Ap and has similarity to rat L18a ribosomal protein 1.79637536044531 2483.39868164063 3892.51867675781 RPL20B 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 4151.82080078125 2311.22119140625 2655.576171875 3633.21655273438 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR312C /GEN=RPL20B /DB_XREF=GI:6324888 /SEG=NC_001147:-900245,901176 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl20Ap and has similarity to rat L18a ribosomal protein /NOTE=Rpl20bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0005839 // RPL20B SGDID:S0005839, Chr XV from 901176-901170,900762-900245, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YOR312C // cdna:known chromosome:SGD1:XV:900245:901176:-1 gene:YOR312C // ensembl // 11 // --- GENSCAN00000017767 // ensembl // 4 // Cross Hyb Matching Probes /// GENEFINDER00000022768 // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene 1.09744665632278 -1.79637536044531 -1.56184091205071 -1.56343502579699 -1.14273970200223 Max fold change below threshold 4 1.79637536044531 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773749_at YDR456W.S1 Endosomal Na+/H+ exchanger, required for intracellular sequestration of Na+; required for osmotolerance to acute hypertonic shock 1.79632907041083 932.537445068359 1545.23846435547 NHX1 7035 // vacuolar acidification // inferred from mutant phenotype /// 15672 // monovalent inorganic cation transport // inferred from mutant phenotype /// 15672 // monovalent inorganic cation transport // inferred from sequence similarity /// 16197 // endosome transport // inferred from mutant phenotype /// 30004 // monovalent inorganic cation homeostasis // inferred from mutant phenotype 5770 // late endosome // inferred from direct assay 15077 // monovalent inorganic cation transporter activity // inferred from mutant phenotype /// 15077 // monovalent inorganic cation transporter activity // inferred from direct assay /// 15077 // monovalent inorganic cation transporter activity // inferred from sequence similarity 1572.72436523438 875.521301269531 989.553588867188 1517.75256347656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR456W /GEN=NHX1 /DB_XREF=GI:6320663 /SEG=NC_001136:+1367473,1369374 /DEF=Required for intracellular sequestration of Na+ /NOTE=Nhx1p; go_component: late endosome [goid GO:0005770] [evidence IDA] [pmid 9694857]; go_function: monovalent inorganic cation transporter activity [goid GO:0015077] [evidence IDA] [pmid 10998367]; go_function: monovalent inorganic cation transporter activity [goid GO:0015077] [evidence IMP,ISS] [pmid 9334180]; go_process: endosome transport [goid GO:0016197] [evidence IMP] [pmid 20757]; go_process: monovalent inorganic cation homeostasis [goid GO:0030004] [evidence IMP] [pmid 10589731]; go_process: monovalent inorganic cation transport [goid GO:0015672] [evidence IMP,ISS] [pmid 9334180]; go_process: vacuolar acidification [goid GO:0007035] [evidence IMP] [pmid 10589731] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 3.40000009536743 S0002864 // span:59-81,88-107,117-139,152-174,260-282,345-364,379-401,458-480 // numtm:8 S0002864 // NHX1 SGDID:S0002864, Chr IV from 1367475-1369376, Verified ORF // sgd // 11 // --- /// GENSCAN00000025456 // cdna:Genscan chromosome:SGD1:IV:1367475:1369376:1 // ensembl // 11 // --- /// GENEFINDER00000023624 // cdna:GeneFinder chromosome:SGD1:IV:1367796:1369376:1 // ensembl // 11 // --- /// YDR456W // cdna:known chromosome:SGD1:IV:1367475:1369376:1 gene:YDR456W // ensembl // 11 // --- --- No cerevisiae_gene -1.49022274529309 -1.79632907041083 -1.29255359171915 -1.5893271298574 -1.03621921193261 Max fold change below threshold 4 1.79632907041083 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775444_at YOR177C.S1 Component of the meiotic outer plaque, a membrane-organizing center which is assembled on the cytoplasmic face of the spindle pole body during meiosis II and triggers the formation of the prospore membrane; potential Cdc28p substrate 1.79623506513845 36.9922752380371 60.8942337036133 MPC54 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 5816 // spindle pole body // inferred from direct assay 5198 // structural molecule activity // inferred from direct assay /// 5198 // structural molecule activity // inferred from mutant phenotype 59.2435111999512 41.0025024414063 32.982048034668 62.5449562072754 0.00195312988944352 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR177C /GEN=MPC54 /DB_XREF=GI:6324751 /SEG=NC_001147:-665785,667179 /DEF=Component of the meiotic outer plaque, a membrane-organizing center which is assembled on the cytoplasmic face of the spindle pole body during meiosis II and triggers the formation of the prospore membrane; potential Cdc28p substrate /NOTE=Mpc54p; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 10899120]; go_function: structural molecule activity [goid GO:0005198] [evidence IDA,IMP] [pmid 12796288]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence IMP] [pmid 10899120] --- --- --- --- --- --- S0005703 // MPC54 SGDID:S0005703, Chr XV from 667179-665785, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017597 // cdna:Genscan chromosome:SGD1:XV:665785:667179:-1 // ensembl // 11 // --- /// GENEFINDER00000022777 // cdna:GeneFinder chromosome:SGD1:XV:665785:667179:-1 // ensembl // 11 // --- /// YOR177C // cdna:known chromosome:SGD1:XV:665785:667179:-1 gene:YOR177C // ensembl // 11 // --- --- No cerevisiae_gene -1.33632409427897 -1.44487549960181 1.17388586244556 -1.79623506513845 1.05572669378393 Max fold change below threshold 4 1.79623506513845 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777417_at YDR289C.S1 Protein that interacts with exonuclease Rat1p and Rai1p and plays a role in transcription termination by RNA polymerase II, has an RPR domain (carboxy-terminal domain interacting domain); also involved in regulation of Ty1 transposition 1.79600739577086 329.999374389648 231.684425354004 RTT103 335 // negative regulation of DNA transposition // inferred from mutant phenotype /// 30846 // transcription termination from Pol II promoter, RNA polymerase(A) coupled // inferred from physical interaction --- --- 202.529769897461 296.253784179688 363.744964599609 260.839080810547 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR289C /GEN=RTT103 /DB_XREF=GI:6320496 /SEG=NC_001136:-1038272,1039501 /DEF=Regulator of Ty1 Transposition /NOTE=Rtt103p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: negative regulation of DNA transposition [goid GO:0000335] [evidence IMP] [pmid 11779788] --- --- --- --- --- --- S0002697 // RTT103 SGDID:S0002697, Chr IV from 1039503-1038274, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023432 // cdna:GeneFinder chromosome:SGD1:IV:1038274:1038912:-1 // ensembl // 11 // --- /// YDR289C // cdna:known chromosome:SGD1:IV:1038274:1039503:-1 gene:YDR289C // ensembl // 11 // --- --- No cerevisiae_gene 1.28477974557506 1.46276660626079 1.5226934155233 1.79600739577086 1.28790488895834 Max fold change below threshold 4 1.79600739577086 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778750_at SPAPB24D3.02c.S1 --- 1.79587200804013 --- --- --- --- 4.94384527206421 8.87851333618164 4.62771368026733 3.31439757347107 0.24609400331974 0.129638999700546 0.194580003619194 0.14453125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB24D3.02c /DEF=amino acid permease family --- --- --- --- --- --- SPAPB24D3.02c // |||amino acid permease family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.56071332822428 1.79587200804013 -1.02361301011973 -1.06831269469952 -1.4916271094438 Max fold change below threshold 4 1.79587200804013 Max fold change below threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772771_at SPBC21H7.06c.S1 --- 1.79545884184074 --- --- --- --- 0.246115610003471 0.346289247274399 0.20240606367588 0.401973068714142 0.989257991313934 0.780517995357513 0.780517995357513 0.696289002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21H7.06c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPBC21H7.06c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.79545884184074 1.40701862539119 -1.65552368661747 -1.21594978694702 1.63326929449324 Max fold change below threshold 0 1.79545884184074 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772036_at SPBC36.11.S1 --- 1.79505457707204 --- --- --- --- 7.84892654418945 14.0892515182495 9.96152210235596 5.86050844192505 0.0561522990465164 0.0676269978284836 0.0561522990465164 0.194580003619194 M A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC36.11 /DEF=hypothetical protein --- --- --- --- --- --- SPBC36.11 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.15463361990407 1.79505457707204 -1.0543081296494 1.26915725943829 -1.33929105673487 Max fold change below threshold 4 1.79505457707204 Max fold change below threshold MAAAMA No 4 0 MAMA 2 0 2 No No x = 1
1773559_at YMR284W.S1 Subunit of the telomeric Ku complex (Yku70p-Yku80p), involved in telomere length maintenance, structure and telomere position effect; relocates to sites of double-strand cleavage to promote nonhomologous end joining during DSB repair 1.79495913975884 499.187103271484 623.538879394531 YKU70 723 // telomere maintenance // inferred from mutant phenotype /// 724 // double-strand break repair via homologous recombination // inferred from mutant phenotype /// 6303 // double-strand break repair via nonhomologous end-joining // inferred from direct assay /// 6333 // chromatin assembly or disassembly // inferred from direct assay /// 6342 // chromatin silencing // inferred from mutant phenotype /// 6342 // chromatin silencing // inferred from direct assay 790 // nuclear chromatin // traceable author statement /// 5635 // nuclear membrane // inferred from direct assay /// 5724 // nuclear telomeric heterochromatin // traceable author statement 3684 // damaged DNA binding // traceable author statement /// 3723 // RNA binding // inferred from direct assay 577.583374023438 512.786254882813 485.587951660156 669.494384765625 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR284W /GEN=YKU70 /DB_XREF=GI:6323940 /SEG=NC_001145:+838186,839994 /DEF=Forms heterodimer with Yku80p known as Ku, binds chromosome ends and is involved in maintaining normal telomere length and structure, in addition to participating in the formation of silent chromatin at telomere-proximal genes /NOTE=Yku70p; go_component: nuclear chromatin [goid GO:0000790] [evidence TAS] [pmid 10367891]; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 10638763]; go_component: nuclear telomeric heterochromatin [goid GO:0005724] [evidence TAS] [pmid 12080091]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 12975323]; go_function: damaged DNA binding [goid GO:0003684] [evidence TAS] [pmid 10367891]; go_process: chromatin assembly/disassembly [goid GO:0006333] [evidence IDA] [pmid 11553718]; go_process: chromatin silencing [goid GO:0006342] [evidence IDA,IMP] [pmid 9501103]; go_process: double-strand break repair via homologous recombination [goid GO:0000724] [evidence IMP] [pmid 11016833]; go_process: double-strand break repair via nonhomologous end-joining [goid GO:0006303] [evidence IDA] [pmid 10908335]; go_process: telomere maintenance [goid GO:0000723] [evidence IMP] [pmid 10818099] --- --- --- --- --- --- S0004897 // YKU70 SGDID:S0004897, Chr XIII from 838186-839994, Verified ORF // sgd // 11 // --- /// GENSCAN00000018953 // cdna:Genscan chromosome:SGD1:XIII:838186:839994:1 // ensembl // 11 // --- /// YMR284W // cdna:known chromosome:SGD1:XIII:838186:839994:1 gene:YMR284W // ensembl // 11 // --- --- No cerevisiae_gene -1.79495913975884 -1.12636282373722 1.38324587456618 -1.1894516164348 1.15913029161822 Max fold change below threshold 4 1.79495913975884 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776372_at YLR170C.S1 Small subunit of the clathrin-associated adaptor complex AP-1, which is involved in protein sorting at the trans-Golgi network; homolog of the sigma subunit of the mammalian clathrin AP-1 complex 1.79464159648871 194.675048828125 291.163131713867 APS1 16192 // vesicle-mediated transport // inferred from sequence similarity /// 16192 // vesicle-mediated transport // traceable author statement /// 16192 // vesicle-mediated transport // inferred from physical interaction 30121 // AP-1 adaptor complex // inferred from sequence similarity /// 30121 // AP-1 adaptor complex // inferred from physical interaction 30276 // clathrin binding // inferred from sequence similarity /// 30276 // clathrin binding // inferred from physical interaction 264.350219726563 242.050369262695 147.299728393555 317.976043701172 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR170C /GEN=APS1 /DB_XREF=GI:6323200 /SEG=NC_001144:-500581,501051 /DEF=Involved in a subset of clathrin functions at the Golgi /NOTE=Aps1p; go_component: AP-1 adaptor complex [goid GO:0030121] [evidence IPI,ISS] [pmid 10564262]; go_function: clathrin binding [goid GO:0030276] [evidence IPI,ISS] [pmid 10564262]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IPI,ISS] [pmid 10564262] --- --- --- --- --- --- S0004160 // APS1 SGDID:S0004160, Chr XII from 501051-500581, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017952 // cdna:Genscan chromosome:SGD1:XII:500581:501051:-1 // ensembl // 11 // --- /// YLR170C // cdna:known chromosome:SGD1:XII:500581:501051:-1 gene:YLR170C // ensembl // 11 // --- YLR169W // ensembl // 3 // Negative Strand Matching Probes /// YLR171W // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene 1.13604144337923 -1.09212896692451 -1.03262278508869 -1.79464159648871 1.20285901040702 Max fold change below threshold 4 1.79464159648871 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780062_at YIL149C.S1 Myosin-like protein associated with the nuclear envelope, connects the nuclear pore complex with the nuclear interior; involved in the Tel1p pathway that controls telomere length 1.79426983132976 766.750854492188 1251.85247802734 MLP2 6406 // mRNA-nucleus export // inferred from genetic interaction /// 6406 // mRNA-nucleus export // inferred from physical interaction /// 6606 // protein-nucleus import // inferred from genetic interaction /// 45449 // regulation of transcription // inferred from genetic interaction /// 45449 // regulation of transcription // inferred from expression pattern 5635 // nuclear membrane // inferred from direct assay /// 5654 // nucleoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 30530 // heterogeneous nuclear ribonucleoprotein complex // inferred from physical interaction 43021 // ribonucleoprotein binding // inferred from genetic interaction /// 43021 // ribonucleoprotein binding // inferred from physical interaction 1221.87902832031 752.742370605469 780.759338378906 1281.82592773438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL149C /GEN=MLP2 /DB_XREF=GI:6322042 /SEG=NC_001141:-63028,68067 /DEF=Mlp proteins restrict telomere length by influencing the Rif1-Tel1 pathway of telomerase regulation; also involved in the translocation of macromolecules between the nucleoplasm and the NPC /NOTE=Mlp2p; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 10085285]; go_component: nucleoplasm [goid GO:0005654] [evidence IDA] [pmid 10085285]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-nucleus import [goid GO:0006606] [evidence IDA] [pmid 10085285] --- --- --- --- scop // a.2.7.Phenylalanyl-tRNA synthetase (PheRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Phenylalanyl-tRNA synthetase (PheRS) // 0.920000016689301 --- S0001411 // MLP2 SGDID:S0001411, Chr IX from 68067-63028, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016363 // cdna:Genscan chromosome:SGD1:IX:63028:68067:-1 // ensembl // 11 // --- /// GENEFINDER00000019099 // cdna:GeneFinder chromosome:SGD1:IX:63028:67401:-1 // ensembl // 11 // --- /// YIL149C // cdna:known chromosome:SGD1:IX:63028:68067:-1 gene:YIL149C // ensembl // 11 // --- --- No cerevisiae_gene -1.79426983132976 -1.62323668234258 -1.14804009410374 -1.56498804209925 1.04906123930817 Max fold change below threshold 4 1.79426983132976 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772871_at YDR291W.S1 Hypothetical protein 1.7940508046682 306.403091430664 414.500335693359 --- --- 5634 // nucleus // inferred from direct assay 4386 // helicase activity // inferred from sequence similarity 396.831420898438 261.335388183594 351.470794677734 432.169250488281 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR291W /GEN=RTT103 /DB_XREF=GI:6320497 /SEG=NC_001136:+1039720,1042953 /DEF=Hypothetical ORF /NOTE=Ydr291wp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: helicase activity [goid GO:0004386] [evidence ISS] [pmid 10077188]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002699 // YDR291W SGDID:S0002699, Chr IV from 1039722-1042955, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023504 // cdna:GeneFinder chromosome:SGD1:IV:1039722:1042955:1 // ensembl // 11 // --- /// GENSCAN00000025322 // cdna:Genscan chromosome:SGD1:IV:1039935:1042955:1 // ensembl // 11 // --- /// YDR291W // cdna:known chromosome:SGD1:IV:1039722:1042955:1 gene:YDR291W // ensembl // 11 // --- --- No cerevisiae_gene -1.42379690796467 -1.51847564027439 1.7940508046682 -1.12905944649624 1.08904997872859 Max fold change below threshold 4 1.7940508046682 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770690_at YDL033C.S1 tRNA-specific 2-thiouridylase, responsible for 2-thiolation of the wobble base of mitochondrial tRNAs; human ortholog is implicated in myoclonus epilepsy associated with ragged red fibers (MERRF) 1.79356689442519 304.852951049805 210.659324645996 SLM3 6400 // tRNA modification // inferred from mutant phenotype /// 6412 // protein biosynthesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 4808 // tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity // inferred from sequence similarity /// 4808 // tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity // inferred from mutant phenotype 193.192596435547 263.202056884766 346.503845214844 228.126052856445 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL033C /GEN=GPR1 /DB_XREF=GI:6320172 /SEG=NC_001136:-392656,393909 /DEF=Mitochondrial protein with a potential role in protein synthesis; the bacterial homolog is responsible for the 2-thiolation of mnm5s2U34 in tRNALys, tRNAGlu, and tRNAGln /NOTE=Ydl033cp --- --- --- --- --- --- S0002191 // MTO2 SGDID:S0002191, Chr IV from 393909-392656, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023901 // cdna:GeneFinder chromosome:SGD1:IV:392656:393909:-1 // ensembl // 11 // --- /// GENSCAN00000025075 // cdna:Genscan chromosome:SGD1:IV:392656:393909:-1 // ensembl // 11 // --- /// YDL033C // cdna:known chromosome:SGD1:IV:392656:393909:-1 gene:YDL033C // ensembl // 11 // --- --- No cerevisiae_gene 1.2204642261673 1.36238169443815 1.55679227742995 1.79356689442519 1.18082192105407 Max fold change below threshold 4 1.79356689442519 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774736_at YPR098C.S1 Hypothetical protein 1.79344015493696 3650.90222167969 2219.17980957031 --- --- 5739 // mitochondrion // inferred from direct assay --- 2316.71850585938 4154.89599609375 3146.90844726563 2121.64111328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR098C /GEN=SYT1 /DB_XREF=GI:37362707 /SEG=NC_001148:-728943,729524 /DEF=Hypothetical ORF /NOTE=Ypr098cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0006302 // span:10-32,60-82,134-156 // numtm:3 S0006302 // YPR098C SGDID:S0006302, Chr XVI from 729526-729480,729383-728945, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 10 // --- /// YPR098C // cdna:known chromosome:SGD1:XVI:728945:729526:-1 gene:YPR098C // ensembl // 10 // --- --- No cerevisiae_gene -1.20857786128509 1.79344015493696 -1.00998492251475 1.3583473517851 -1.09194646132985 Max fold change below threshold 4 1.79344015493696 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771203_at SPBP22H7.02c.S1 --- 1.7933213078187 --- --- --- --- 1.60398185253143 1.54747605323792 0.89441967010498 1.94377446174622 0.805419981479645 0.828612983226776 0.919434010982513 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP22H7.02c /DEF=RNA-binding protein --- --- --- --- --- --- SPBP22H7.02c // |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.5561642501618 -1.03651481337969 -1.52912400687784 -1.7933213078187 1.21184317558114 Max fold change below threshold 0 1.7933213078187 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776695_at YER074W-A.S1 Integral membrane protein required for ER to Golgi transport; localized to the Golgi, the ER, and COPII vesicles; interacts with Yip1p and Yif1p 1.79312146134723 899.655334472656 599.65673828125 YOS1 6888 // ER to Golgi transport // inferred from mutant phenotype 5789 // endoplasmic reticulum membrane // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // inferred from physical interaction /// 30138 // COPII-coated vesicle // inferred from direct assay /// 30138 // COPII-coated vesicle // inferred from physical interaction /// 30173 // integral to Golgi membrane // inferred from physical interaction /// 30173 // integral to Golgi membrane // inferred from direct assay --- 557.330322265625 999.360961914063 799.94970703125 641.983154296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER074W-A /GEN=RPS24A /DB_XREF=GI:41629682 /SEG=NC_001137:+307649,308119 /DEF=Hypothetical ORF identified by homology. See FEBS Letters [2000]487:31-36. /NOTE=Yer074w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0007651 // span:4-23,58-80 // numtm:2 S0007651 // YER074W-A SGDID:S0007651, Chr V from 307649-307742,307845-307952,308064-308119, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YER074W-A // cdna:known chromosome:SGD1:V:307649:308119:1 gene:YER074W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.13919244795374 1.79312146134723 -1.13072194800237 1.43532421451491 1.15188987329296 Max fold change below threshold 4 1.79312146134723 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777409_at YCR015C.S1 Hypothetical protein 1.79290731510806 202.397804260254 144.012702941895 --- --- --- --- 124.616470336914 181.369827270508 223.42578125 163.408935546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR015C /GEN=POL4 /DB_XREF=GI:10383783 /SEG=NC_001135:-141214,142167 /DEF=Hypothetical ORF /NOTE=Ycr015cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000608 // YCR015C SGDID:S0000608, Chr III from 142167-141214, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YCR015C // cdna:known chromosome:SGD1:III:141214:142167:-1 gene:YCR015C // ensembl // 11 // --- --- No cerevisiae_gene 1.73265310495521 1.455424205004 1.72610910061572 1.79290731510806 1.31129484814552 Max fold change below threshold 4 1.79290731510806 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776679_at YHL047C.S1 Transporter, member of the ARN family of transporters that specifically recognize siderophore-iron chelates; responsible for uptake of iron bound to the siderophore triacetylfusarinine C 1.79288954849528 195.206764221191 124.892486572266 ARN2 6879 // iron ion homeostasis // inferred from mutant phenotype /// 9237 // siderophore metabolism // inferred from mutant phenotype /// 15892 // iron-siderophore transport // inferred from mutant phenotype /// 15892 // iron-siderophore transport // inferred from direct assay 5768 // endosome // traceable author statement /// 5886 // plasma membrane // inferred from sequence similarity /// 16023 // cytoplasmic membrane-bound vesicle // traceable author statement 15343 // siderophore-iron transporter activity // inferred from mutant phenotype /// 15343 // siderophore-iron transporter activity // inferred from genetic interaction /// 15343 // siderophore-iron transporter activity // inferred from direct assay /// 15343 // siderophore-iron transporter activity // inferred from sequence similarity 111.306549072266 190.853179931641 199.560348510742 138.478424072266 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL047C /GEN=ARN2 /DB_XREF=GI:6321740 /SEG=NC_001140:-8298,10211 /DEF=Transporter, member of the ARN family of transporters that specifically recognize siderophore-iron chelates; responsible for uptake of iron bound to the siderophore triacetylfusarinine C /NOTE=Arn2p; go_component: cytoplasmic vesicle [goid GO:0016023] [evidence TAS] [pmid 12196168]; go_component: endosome [goid GO:0005768] [evidence TAS] [pmid 12196168]; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 10816729]; go_function: siderochrome-iron transporter activity [goid GO:0015343] [evidence IGI,IMP] [pmid 10748025]; go_function: siderochrome-iron transporter activity [goid GO:0015343] [evidence IDA,ISS] [pmid 10816729]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IMP] [pmid 10816729]; go_process: iron-siderochrome transport [goid GO:0015892] [evidence IDA,IMP] [pmid 10816729]; go_process: siderochrome metabolism [goid GO:0009237] [evidence IMP] [pmid 10816729] --- --- --- --- --- S0001039 // span:71-93,106-128,135-152,162-184,191-213,223-245,286-308,318-335,355-377,392-414,421-438,448-470,491-513,561-578 // numtm:14 S0001039 // ARN2 SGDID:S0001039, Chr VIII from 10211-8298, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016514 // cdna:Genscan chromosome:SGD1:VIII:8298:10211:-1 // ensembl // 11 // --- /// GENEFINDER00000020114 // cdna:GeneFinder chromosome:SGD1:VIII:8298:10211:-1 // ensembl // 11 // --- /// YHL047C // cdna:known chromosome:SGD1:VIII:8298:10211:-1 gene:YHL047C // ensembl // 11 // --- --- No cerevisiae_gene 1.41226287550795 1.71466262787223 1.62498749072257 1.79288954849528 1.24411748658526 Max fold change below threshold 4 1.79288954849528 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780250_at YNL084C.S1 EH domain-containing protein involved in endocytosis, actin cytoskeletal organization and cell wall morphogenesis; forms a complex with Sla1p and Pan1p 1.7926267573748 1214.70220947266 974.198272705078 END3 147 // actin cortical patch assembly // traceable author statement /// 910 // cytokinesis // inferred from mutant phenotype /// 6897 // endocytosis // inferred from mutant phenotype /// 7015 // actin filament organization // inferred from physical interaction /// 7121 // bipolar bud site selection // inferred from mutant phenotype 30479 // actin cortical patch // traceable author statement 30674 // protein binding, bridging // inferred from physical interaction 1033.77209472656 1394.48706054688 1034.91735839844 914.624450683594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL084C /GEN=END3 /DB_XREF=GI:6324245 /SEG=NC_001146:-470053,471102 /DEF=EH domain-containing protein involved in endocytosis, actin cytoskeletal organization and cell wall morphogenesis; forms a complex with Sla1p and Pan1p /NOTE=End3p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence TAS] [pmid 10652251]; go_function: protein binding, bridging [goid GO:0030674] [evidence IPI] [pmid 10594004]; go_process: actin cortical patch assembly [goid GO:0000147] [evidence TAS] [pmid 10652251]; go_process: actin filament organization [goid GO:0007015] [evidence IPI] [pmid 10652251]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 10652251]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251] --- --- --- --- --- --- S0005028 // END3 SGDID:S0005028, Chr XIV from 471102-470053, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019965 // cdna:Genscan chromosome:SGD1:XIV:470053:471102:-1 // ensembl // 11 // --- /// GENEFINDER00000020483 // cdna:GeneFinder chromosome:SGD1:XIV:470053:471102:-1 // ensembl // 11 // --- /// YNL084C // cdna:known chromosome:SGD1:XIV:470053:471102:-1 gene:YNL084C // ensembl // 11 // --- --- No cerevisiae_gene -1.7926267573748 1.34893084042448 1.4371346308466 1.00110784928101 -1.13026947175304 Max fold change below threshold 4 1.7926267573748 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771101_at YKL168C.S1 Putative serine/threonine protein kinase with unknown cellular role 1.79220998324218 423.749038696289 584.130523681641 KKQ8 --- 5737 // cytoplasm // inferred from direct assay 4672 // protein kinase activity // inferred from sequence similarity 544.835144042969 368.604705810547 478.893371582031 623.425903320313 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL168C /GEN=KKQ8 /DB_XREF=GI:6322680 /SEG=NC_001143:-131293,133497 /DEF=Serine/threonine protein kinase of unknown function /NOTE=Kkq8p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 9020587]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 5.0E-52 /// hanks // 2.2.12 // CaMK Group; CaMK II KIN1/SNF1/Nim1; YCL24 // 1.0E-57 --- --- S0001651 // KKQ8 SGDID:S0001651, Chr XI from 133497-131293, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018294 // cdna:Genscan chromosome:SGD1:XI:131293:133494:-1 // ensembl // 11 // --- /// YKL168C // cdna:known chromosome:SGD1:XI:131293:133497:-1 gene:YKL168C // ensembl // 11 // --- --- No cerevisiae_gene -1.50434544110181 -1.47810143347166 1.79220998324218 -1.13769614777314 1.14424686097552 Max fold change below threshold 4 1.79220998324218 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773275_at YGR116W.S1 Essential protein that interacts with histones and is involved in nucleosome disassembly and reassembly during transcription elongation 1.79174314921261 348.531127929688 611.138153076172 SPT6 6325 // establishment and/or maintenance of chromatin architecture // traceable author statement /// 6334 // nucleosome assembly // inferred from direct assay /// 6355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 6368 // RNA elongation from RNA polymerase II promoter // inferred from physical interaction 5634 // nucleus // inferred from physical interaction /// 5739 // mitochondrion // inferred from direct assay /// 8023 // transcription elongation factor complex // inferred from physical interaction 16944 // RNA polymerase II transcription elongation factor activity // inferred from mutant phenotype 608.077697753906 339.377716064453 357.684539794922 614.198608398438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR116W /GEN=SPT6 /DB_XREF=GI:6321552 /SEG=NC_001139:+720411,724766 /DEF=Essential protein that interacts with histones and is involved in nucleosome disassembly and reassembly during transcription elongation /NOTE=Spt6p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 8633238]; go_component: transcription elongation factor complex [goid GO:0008023] [evidence IPI] [pmid 12242279]; go_function: Pol II transcription elongation factor activity [goid GO:0016944] [evidence IMP] [pmid 9450930]; go_process: RNA elongation from Pol II promoter [goid GO:0006368] [evidence IPI] [pmid 12242279]; go_process: establishment and/or maintenance of chromatin architecture [goid GO:0006325] [evidence TAS] [pmid 8805244]; go_process: nucleosome assembly [goid GO:0006334] [evidence IDA] [pmid 8633238]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence IMP] [pmid 9450930] --- --- --- --- --- --- S0003348 // SPT6 SGDID:S0003348, Chr VII from 720413-724768, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021714 // cdna:GeneFinder chromosome:SGD1:VII:720413:724768:1 // ensembl // 11 // --- /// GENSCAN00000019430 // cdna:Genscan chromosome:SGD1:VII:720716:724768:1 // ensembl // 11 // --- /// YGR116W // cdna:known chromosome:SGD1:VII:720413:724768:1 gene:YGR116W // ensembl // 11 // --- --- No cerevisiae_gene -1.18205683628503 -1.79174314921261 1.24056372013938 -1.70003908500643 1.0100660008863 Max fold change below threshold 4 1.79174314921261 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771072_at YMR159C.S1 Protein that interacts with the Atg12p-Atg5p conjugate during formation of the pre-autophagosomal structure; essential for autophagy 1.79155100224135 29.8565244674683 23.3914365768433 ATG16 6914 // autophagy // inferred from mutant phenotype 5624 // membrane fraction // inferred from direct assay --- 24.9093360900879 35.2364311218262 24.4766178131104 21.8735370635986 0.014160200022161 0.00195312988944352 0.00805663969367743 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR159C /GEN=ATG16 /DB_XREF=GI:6323811 /SEG=NC_001145:-574475,574927 /DEF=Protein that interacts with the Atg12p-Atg5p conjugate during formation of the pre-autophagosomal structure; essential for autophagy /NOTE=Atg16p; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 10406794]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: autophagy [goid GO:0006914] [evidence IMP] [pmid 10406794] --- --- --- --- --- --- S0004769 // ATG16 SGDID:S0004769, Chr XIII from 574927-574475, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018845 // cdna:Genscan chromosome:SGD1:XIII:574475:574858:-1 // ensembl // 10 // --- /// YMR159C // cdna:known chromosome:SGD1:XIII:574475:574927:-1 gene:YMR159C // ensembl // 11 // --- YMR158W-B // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene -1.79155100224135 1.41458732558704 1.26934042570461 -1.01767884273397 -1.13878866585054 Max fold change below threshold 4 1.79155100224135 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1772291_at SPAPB1A10.05.S1 --- 1.79125343452285 --- --- --- --- 10.2840099334717 13.2254114151001 5.74123668670654 5.94023084640503 0.014160200022161 0.111571997404099 0.0461426004767418 0.0805663987994194 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1A10.05 /DEF=sequence orphan --- --- --- --- --- --- SPAPB1A10.05 // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.2833554335462 1.28601698176651 -1.22040323818241 -1.79125343452285 -1.73124752208838 Max fold change below threshold 4 1.79125343452285 Max fold change below threshold PPAPPA No 4 0 PAPA 2 2 0 No No 1 < x = 2
1773712_at YMR153W.S1 Subunit of the nuclear pore complex (NPC), interacts with karyopherin Kap121p or with Nup170p via overlapping regions of Nup53p, involved in activation of the spindle checkpoint mediated by the Mad1p-Mad2p complex 1.79118700652059 798.052886962891 673.081817626953 NUP53 59 // protein-nucleus import, docking // inferred from physical interaction /// 6406 // mRNA-nucleus export // traceable author statement /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6999 // nuclear pore organization and biogenesis // traceable author statement 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement 645.294372558594 736.653076171875 859.452697753906 700.869262695313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR153W /GEN=NUP53 /DB_XREF=GI:6323802 /SEG=NC_001145:+564434,565861 /DEF=Subunit of the nuclear pore complex (NPC), interacts with karyopherin Kap121p or with Nup170p via overlapping regions of Nup53p, involved in activation of the spindle checkpoint mediated by the Mad1p-Mad2p complex /NOTE=Nup53p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence TAS] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus import, docking [goid GO:0000059] [evidence IPI] [pmid 9864357]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0004762 // NUP53 SGDID:S0004762, Chr XIII from 564434-565861, Verified ORF // sgd // 11 // --- /// GENSCAN00000018841 // cdna:Genscan chromosome:SGD1:XIII:564434:565861:1 // ensembl // 11 // --- /// GENEFINDER00000022053 // cdna:GeneFinder chromosome:SGD1:XIII:564434:565861:1 // ensembl // 11 // --- /// YMR153W // cdna:known chromosome:SGD1:XIII:564434:565861:1 gene:YMR153W // ensembl // 11 // --- YMR153C-A // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene 1.79118700652059 1.14157678649985 1.12840724660944 1.33187694531749 1.08612331441287 Max fold change below threshold 4 1.79118700652059 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771859_at YHR186C.S1 Subunit of TORC1, a rapamycin-sensitive complex involved in growth control that contains Tor1p or Tor2p, Lst8p and Tco89p; contains four HEAT repeats and seven WD-40 repeats; may act as a scaffold protein to couple TOR and its effectors 1.79115675275556 330.073760986328 498.805068969727 KOG1 --- 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 479.402984619141 267.649932861328 392.497589111328 518.207153320313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR186C /GEN=KOG1 /DB_XREF=GI:6321980 /SEG=NC_001140:-475997,480670 /DEF=Subunit of TORC1, a rapamycin-sensitive complex involved in growth control that contains Tor1p or Tor2p, Lst8p and Tco89p; contains four HEAT repeats and seven WD-40 repeats; may act as a scaffold protein to couple TOR and its effectors /NOTE=Kog1p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001229 // KOG1 SGDID:S0001229, Chr VIII from 480671-475998, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016709 // cdna:Genscan chromosome:SGD1:VIII:475998:480671:-1 // ensembl // 11 // --- /// GENEFINDER00000020219 // cdna:GeneFinder chromosome:SGD1:VIII:475998:478664:-1 // ensembl // 11 // --- /// YHR186C // cdna:known chromosome:SGD1:VIII:475998:480671:-1 gene:YHR186C // ensembl // 11 // --- --- No cerevisiae_gene -1.61156771459603 -1.79115675275556 1.1598258764662 -1.22141638042817 1.08094269319579 Max fold change below threshold 4 1.79115675275556 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776539_at YOR026W.S1 Kinetochore checkpoint WD40 repeat protein that localizes to kinetochores during prophase and metaphase, delays anaphase in the presence of unattached kinetochores; forms complexes with Mad1p-Bub1p and with Cdc20p, binds Mad2p and Mad3p 1.79107175796989 789.119445800781 1001.70123291016 BUB3 7094 // mitotic spindle checkpoint // traceable author statement 778 // condensed nuclear chromosome kinetochore // inferred from physical interaction --- 967.171752929688 835.487060546875 742.751831054688 1036.23071289063 0.000732421991415322 0.00122069998178631 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR026W /GEN=BUB3 /DB_XREF=GI:6324600 /SEG=NC_001147:+379780,380805 /DEF=Protein required for cell cycle arrest in response to loss of microtubule function /NOTE=Bub3p; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IPI] [pmid 12221113]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitotic spindle checkpoint [goid GO:0007094] [evidence TAS] [pmid 9448456] --- --- --- --- --- --- S0005552 // BUB3 SGDID:S0005552, Chr XV from 379780-380805, Verified ORF // sgd // 11 // --- /// GENSCAN00000017484 // cdna:Genscan chromosome:SGD1:XV:379780:380805:1 // ensembl // 11 // --- /// GENEFINDER00000022581 // cdna:GeneFinder chromosome:SGD1:XV:379780:380805:1 // ensembl // 11 // --- /// YOR026W // cdna:known chromosome:SGD1:XV:379780:380805:1 gene:YOR026W // ensembl // 11 // --- --- No cerevisiae_gene 1.45539021422375 -1.15761428105974 -1.79107175796989 -1.30214657506307 1.07140299512651 Max fold change below threshold 4 1.79107175796989 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770770_at SPAC27E2.05.S1 --- 1.79073861189309 --- --- --- --- 10.174880027771 18.2205505371094 11.8395023345947 11.2594718933105 0.0375977009534836 0.0107421996071935 0.00805663969367743 0.018554700538516 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27E2.05 /GEN=cdc1 /DEF=DNA polymerase delta (small subunit) --- --- --- --- --- --- Y12562 // S.pombe mRNA for Cdc1 protein. // gb // 11 // --- /// SPAC27E2.05 // |cdc1|mis1|DNA polymerase delta |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.51471293081957 1.79073861189309 1.48132036945826 1.16360117291608 1.10659505198875 Max fold change below threshold 4 1.79073861189309 Max fold change below threshold PAPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1776129_at YJR077C.S1 Mitochondrial phosphate carrier, imports inorganic phosphate into mitochondria; functionally redundant with Pic2p but more abundant than Pic2 under normal conditions 1.79050967004746 5554.5439453125 3328.7412109375 MIR1 6817 // phosphate transport // inferred from direct assay 5739 // mitochondrion // inferred from direct assay /// 5740 // mitochondrial membrane // inferred from direct assay 5315 // inorganic phosphate transporter activity // inferred from direct assay 3504.71362304688 6275.2236328125 4833.8642578125 3152.76879882813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR077C /GEN=MIR1 /DB_XREF=GI:6322537 /SEG=NC_001142:-577169,578104 /DEF=Mitochondrial phosphate carrier, imports inorganic phosphate into mitochondria; functionally redundant with Pic2p but more abundant than Pic2 under normal conditions /NOTE=Mir1p; go_component: mitochondrial membrane [goid GO:0005740] [evidence IDA] [pmid 2170848]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11914276]; go_function: inorganic phosphate transporter activity [goid GO:0005315] [evidence IDA] [pmid 9099701]; go_process: phosphate transport [goid GO:0006817] [evidence IDA] [pmid 9099701] --- --- --- --- --- --- S0003838 // MIR1 SGDID:S0003838, Chr X from 578104-577169, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024195 // cdna:Genscan chromosome:SGD1:X:577169:578104:-1 // ensembl // 11 // --- /// GENEFINDER00000024442 // cdna:GeneFinder chromosome:SGD1:X:577169:578104:-1 // ensembl // 11 // --- /// YJR077C // cdna:known chromosome:SGD1:X:577169:578104:-1 gene:YJR077C // ensembl // 11 // --- --- No cerevisiae_gene -1.10310630551434 1.79050967004746 -1.12684714988733 1.37924657410671 -1.11163039432183 Max fold change below threshold 4 1.79050967004746 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778662_at SPAC17G8.03c.S1 --- 1.79043958792896 --- --- --- --- 6.49474287033081 8.79568195343018 8.65857791900635 5.3544750213623 0.24609400331974 0.366210997104645 0.194580003619194 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G8.03c /DEF=histone fold --- --- --- --- --- --- SPAC17G8.03c // |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.79043958792896 1.35427716370582 1.04427294431915 1.33316716179178 -1.2129560497377 Max fold change below threshold 4 1.79043958792896 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774682_at YIL093C.S1 Mitochondrial ribosomal protein of the small subunit 1.79017978192908 332.65168762207 354.834442138672 RSM25 6412 // protein biosynthesis // inferred from direct assay 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // inferred from direct assay 358.434387207031 200.222564697266 465.080810546875 351.234497070313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL093C /GEN=RSM25 /DB_XREF=GI:6322098 /SEG=NC_001141:-187987,188781 /DEF=Mitochondrial ribosomal protein of the small subunit /NOTE=Rsm25p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 11278769]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 11278769]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 11278769] --- --- --- --- --- --- S0001355 // RSM25 SGDID:S0001355, Chr IX from 188781-187987, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016407 // cdna:Genscan chromosome:SGD1:IX:187987:188781:-1 // ensembl // 11 // --- /// GENEFINDER00000019065 // cdna:GeneFinder chromosome:SGD1:IX:187987:188781:-1 // ensembl // 11 // --- /// YIL093C // cdna:known chromosome:SGD1:IX:187987:188781:-1 gene:YIL093C // ensembl // 11 // --- --- No cerevisiae_gene -1.41671534729988 -1.79017978192908 1.23337568830374 1.29753401779011 -1.02049881260746 Max fold change below threshold 4 1.79017978192908 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771837_at YKL186C.S1 mRNA transport regulator, essential nuclear protein; Mex67p and Mtr2p form a mRNA export complex which binds to RNA 1.78973417084933 624.402069091797 1031.49780273438 MTR2 16973 // poly(A)+ mRNA-nucleus export // inferred from mutant phenotype /// 16973 // poly(A)+ mRNA-nucleus export // inferred from physical interaction 5643 // nuclear pore // inferred from direct assay 5515 // protein binding // inferred from direct assay 988.533081054688 552.335144042969 696.468994140625 1074.46252441406 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL186C /GEN=MTR2 /DB_XREF=GI:6322662 /SEG=NC_001143:-92749,93303 /DEF=mRNA transport regulator /NOTE=Mtr2p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9774696]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 10952996]; go_process: poly(A)+ mRNA-nucleus export [goid GO:0016973] [evidence IMP,IPI] [pmid 9774696] --- --- --- --- --- --- S0001669 // MTR2 SGDID:S0001669, Chr XI from 93303-92749, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018279 // cdna:Genscan chromosome:SGD1:XI:92749:93303:-1 // ensembl // 11 // --- /// YKL186C // cdna:known chromosome:SGD1:XI:92749:93303:-1 gene:YKL186C // ensembl // 11 // --- --- No cerevisiae_gene 1.66731871559903 -1.78973417084933 -1.03527263266964 -1.41934973325617 1.08692621926997 Max fold change below threshold 4 1.78973417084933 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775616_at SPAC30D11.01c.S1 --- 1.7895295434023 --- --- --- --- 6.37820053100586 9.8702335357666 11.2052059173584 5.02722501754761 0.212890625 0.533936023712158 0.0676269978284836 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC30D11.01c /DEF=alpha-glucosidase --- --- --- --- --- --- SPAC30D11.01c // ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.13574604770351 1.54749501646823 -1.7895295434023 1.75679736986747 -1.26873185678832 Max fold change below threshold 4 1.7895295434023 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769756_at YBR017C.S1 Transportin, cytosolic karyopherin beta 2 involved in delivery of heterogeneous nuclear ribonucleoproteins to the nucleoplasm, binds rg-nuclear localization signals on Nab2p and Hrp1p, plays a role in cell-cycle progression 1.78947037266039 889.832061767578 1596.42590332031 KAP104 6606 // protein-nucleus import // inferred from mutant phenotype /// 6606 // protein-nucleus import // inferred from physical interaction /// 6606 // protein-nucleus import // inferred from direct assay /// 6606 // protein-nucleus import // inferred from sequence similarity /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // inferred from direct assay /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // inferred from sequence similarity /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // inferred from physical interaction /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // inferred from mutant phenotype /// 7049 // cell cycle // inferred from mutant phenotype 5829 // cytosol // inferred from direct assay 8139 // nuclear localization sequence binding // inferred from physical interaction 1534.51770019531 857.526184082031 922.137939453125 1658.33410644531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR017C /GEN=KAP104 /DB_XREF=GI:6319491 /SEG=NC_001134:-270909,273665 /DEF=Transportin, cytosolic karyopherin beta 2 involved in delivery of heterogeneous nuclear ribonucleoproteins to the nucleoplasm, binds rg-nuclear localization signals on Nab2p and Hrp1p, plays a role in cell-cycle progression /NOTE=Kap104p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 8849456]; go_function: nuclear localization sequence binding [goid GO:0008139] [evidence IPI] [pmid 9488461]; go_process: cell cycle [goid GO:0007049] [evidence IMP] [pmid 12524331]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence IMP,IPI,ISS] [pmid 8849456]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence IDA] [pmid 9488461]; go_process: protein-nucleus import [goid GO:0006606] [evidence IMP,IPI,ISS] [pmid 8849456]; go_process: protein-nucleus import [goid GO:0006606] [evidence IDA] [pmid 9488461] --- --- --- --- scop // a.4.1.Centromere-binding // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding // 1.70000004768372 --- S0000221 // KAP104 SGDID:S0000221, Chr II from 273703-270947, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021152 // cdna:Genscan chromosome:SGD1:II:270947:272362:-1 // ensembl // 11 // --- /// GENEFINDER00000022143 // cdna:GeneFinder chromosome:SGD1:II:270947:273703:-1 // ensembl // 11 // --- /// YBR017C // cdna:known chromosome:SGD1:II:270947:273703:-1 gene:YBR017C // ensembl // 11 // --- --- No cerevisiae_gene -1.34185374347354 -1.78947037266039 -1.18669967573079 -1.66408693812702 1.08068750607063 Max fold change below threshold 4 1.78947037266039 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776589_at YLR332W.S1 O-glycosylated plasma membrane protein that acts as a sensor for cell wall integrity signaling and activates the pathway; interacts with Rom2p, a guanine nucleotide exchange factor for Rho1p, and with cell integrity pathway protein Zeo1p 1.78928622185211 2475.849609375 1582.34991455078 MID2 767 // cellular morphogenesis during conjugation // inferred from genetic interaction /// 767 // cellular morphogenesis during conjugation // inferred from mutant phenotype /// 6970 // response to osmotic stress // inferred from genetic interaction /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from genetic interaction 5887 // integral to plasma membrane // inferred from direct assay 4888 // transmembrane receptor activity // inferred from genetic interaction /// 4888 // transmembrane receptor activity // inferred from mutant phenotype /// 4888 // transmembrane receptor activity // inferred from sequence similarity 1467.05712890625 2624.98510742188 2326.71411132813 1697.64270019531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR332W /GEN=MID2 /DB_XREF=GI:6323363 /SEG=NC_001144:+790676,791806 /DEF=Protein required for mating /NOTE=Mid2p; go_component: integral to plasma membrane [goid GO:0005887] [evidence IDA] [pmid 10348843]; go_function: transmembrane receptor activity [goid GO:0004888] [evidence IGI,IMP,ISS] [pmid 10330137]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IGI] [pmid 10348843]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 11014808]; go_process: cellular morphogenesis during conjugation [goid GO:0000767] [evidence IGI,IMP] [pmid 10330137] --- --- --- --- --- S0004324 // span:225-247 // numtm:1 S0004324 // MID2 SGDID:S0004324, Chr XII from 790676-791806, Verified ORF // sgd // 11 // --- /// YLR332W // cdna:known chromosome:SGD1:XII:790676:791806:1 gene:YLR332W // ensembl // 11 // --- GENSCAN00000018073 // ensembl // 7 // Cross Hyb Matching Probes /// GENEFINDER00000024585 // ensembl // 2 // Cross Hyb Matching Probes No cerevisiae_gene 1.09360689331753 1.78928622185211 -1.0593375907342 1.58597376031483 1.15717559101531 Max fold change below threshold 4 1.78928622185211 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771997_at YGL185C.S1 Putative hydroxyacid dehydrogenase 1.78927774479376 284.891075134277 286.232452392578 --- 8152 // metabolism // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay 16616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from sequence similarity 257.520446777344 243.801528930664 325.980621337891 314.944458007813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL185C /GEN=TPN1 /DB_XREF=GI:6321253 /SEG=NC_001139:-153171,154310 /DEF=Putative hydroxyacid dehydrogenase /NOTE=Ygl185cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [goid GO:0016616] [evidence ISS] [pmid 12525494]; go_process: metabolism [goid GO:0008152] [evidence ISS] [pmid 12525494] --- --- --- --- --- --- S0003153 // YGL185C SGDID:S0003153, Chr VII from 154312-153173, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019211 // cdna:Genscan chromosome:SGD1:VII:153173:154312:-1 // ensembl // 11 // --- /// YGL185C // cdna:known chromosome:SGD1:VII:153173:154312:-1 gene:YGL185C // ensembl // 11 // --- --- No cerevisiae_gene -1.03736123403554 -1.05627084418565 1.78927774479376 1.26584364627069 1.22298816248994 Max fold change below threshold 4 1.78927774479376 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779344_at YBR145W.S1 Alcohol dehydrogenase isoenzyme V; involved in ethanol production 1.78904996789008 2724.41003417969 1741.87603759766 ADH5 6066 // alcohol metabolism // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4022 // alcohol dehydrogenase activity // inferred from sequence similarity 1717.77062988281 2580.23974609375 2868.58032226563 1765.9814453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR145W /GEN=ADH5 /DB_XREF=GI:6319621 /SEG=NC_001134:+533718,534773 /DEF=alcohol dehydrogenase isoenzyme V /NOTE=Adh5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: alcohol dehydrogenase activity [goid GO:0004022] [evidence ISS] [pmid 10974568]; go_process: alcohol metabolism [goid GO:0006066] [evidence ISS] [pmid 10974568] --- --- --- --- --- --- S0000349 // ADH5 SGDID:S0000349, Chr II from 533756-534811, Verified ORF // sgd // 11 // --- /// GENSCAN00000021256 // cdna:Genscan chromosome:SGD1:II:533756:534811:1 // ensembl // 11 // --- /// GENEFINDER00000022188 // cdna:GeneFinder chromosome:SGD1:II:533756:534811:1 // ensembl // 11 // --- /// YBR145W // cdna:known chromosome:SGD1:II:533756:534811:1 gene:YBR145W // ensembl // 11 // --- --- No cerevisiae_gene 1.78904996789008 1.50208630954982 1.11010187125803 1.66994374706553 1.02806592136983 Max fold change below threshold 4 1.78904996789008 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775041_at YPR061C.S1 Probable Hsp40p co-chaperone, has a DnaJ-like domain and appears to be involved in ER-associated degradation of misfolded proteins containing a tightly folded cytoplasmic domain; inhibits replication of Brome mosaic virus in S. cerevisiae 1.78903420350412 699.647735595703 1189.45257568359 JID1 --- 5739 // mitochondrion // inferred from direct assay --- 1208.38537597656 723.855407714844 675.440063476563 1170.51977539063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR061C /GEN=JID1 /DB_XREF=GI:6325318 /SEG=NC_001148:-675972,676877 /DEF=Probable Hsp40p co-chaperone, has a DnaJ-like domain and appears to be involved in ER-associated degradation of misfolded proteins containing a tightly folded cytoplasmic domain /NOTE=Jid1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.99999994947575E-5 --- S0006265 // JID1 SGDID:S0006265, Chr XVI from 676879-675974, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000021040 // cdna:GeneFinder chromosome:SGD1:XVI:675974:676879:-1 // ensembl // 10 // --- /// YPR061C // cdna:known chromosome:SGD1:XVI:675974:676879:-1 gene:YPR061C // ensembl // 10 // --- --- No cerevisiae_gene -1.06090006434573 -1.6693739704057 -1.12354752570464 -1.78903420350412 -1.03234938988818 Max fold change below threshold 4 1.78903420350412 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770203_at YHR006W.S1 Transcription factor, activated by proteolytic processing in response to signals from the SPS sensor system for external amino acids; activates transcription of amino acid permease genes 1.78893367135222 2782.78466796875 1614.20831298828 STP2 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence similarity 5634 // nucleus // inferred from physical interaction 3704 // specific RNA polymerase II transcription factor activity // inferred from genetic interaction /// 3704 // specific RNA polymerase II transcription factor activity // inferred from mutant phenotype /// 3704 // specific RNA polymerase II transcription factor activity // inferred from sequence similarity 1593.2294921875 2850.18188476563 2715.38745117188 1635.18713378906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR006W /GEN=STP2 /DB_XREF=GI:6321794 /SEG=NC_001140:+117808,119433 /DEF=Transcription factor, activated by proteolytic processing in response to signals from the SPS sensor system for external amino acids; activates transcription of amino acid permease genes /NOTE=Stp2p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 10648791]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IGI,IMP,ISS] [pmid 10648791]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IGI,IMP,ISS] [pmid 10648791] --- --- --- --- scop // a.4.5.Lrp/AsnC-like transcriptional regulator N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Lrp/AsnC-like transcriptional regulator N-terminal domain // 1.29999995231628 --- S0001048 // STP2 SGDID:S0001048, Chr VIII from 117808-119433, Verified ORF // sgd // 11 // --- /// GENSCAN00000016558 // cdna:Genscan chromosome:SGD1:VIII:117808:119433:1 // ensembl // 11 // --- /// GENEFINDER00000020140 // cdna:GeneFinder chromosome:SGD1:VIII:117808:119433:1 // ensembl // 11 // --- /// YHR006W // cdna:known chromosome:SGD1:VIII:117808:119433:1 gene:YHR006W // ensembl // 11 // --- --- No cerevisiae_gene 1.20035350086762 1.78893367135222 -1.06049786555456 1.70432914058329 1.02633496417641 Max fold change below threshold 4 1.78893367135222 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777638_at YLR380W.S1 Phosphatidylinositol transfer protein with a potential role in lipid turnover; interacts specifically with thioredoxin peroxidase (Tsa2p) and may have a role in oxidative stress resistance 1.78825170863238 417.969284057617 563.418792724609 CSR1 7047 // cell wall organization and biogenesis // inferred from genetic interaction /// 15914 // phospholipid transport // inferred from direct assay 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5792 // microsome // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 8526 // phosphatidylinositol transporter activity // inferred from direct assay 594.238464355469 350.790557861328 485.148010253906 532.59912109375 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR380W /GEN=CSR1 /DB_XREF=GI:6323412 /SEG=NC_001144:+878282,879508 /DEF=Phosphatidylinositol transfer protein with a potential role in lipid turnover; interacts specifically with thioredoxin peroxidase (Tsa2p) and may have a role in oxidative stress resistance /NOTE=Csr1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10848624]; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 12869188]; go_component: microsome [goid GO:0005792] [evidence IDA] [pmid 12869188]; go_function: phosphatidylinositol transporter activity [goid GO:0008526] [evidence IDA] [pmid 10848624]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IGI] [pmid 10679005]; go_process: phospholipid transport [goid GO:0015914] [evidence IDA] [pmid 10848624] --- --- --- --- --- --- S0004372 // CSR1 SGDID:S0004372, Chr XII from 878282-879508, Verified ORF // sgd // 11 // --- /// GENSCAN00000018105 // cdna:Genscan chromosome:SGD1:XII:878282:879508:1 // ensembl // 11 // --- /// GENEFINDER00000024557 // cdna:GeneFinder chromosome:SGD1:XII:878282:879508:1 // ensembl // 11 // --- /// YLR380W // cdna:known chromosome:SGD1:XII:878282:879508:1 gene:YLR380W // ensembl // 11 // --- --- No cerevisiae_gene 1.78825170863238 -1.69399788859305 1.07451620546953 -1.22486014947164 -1.11573309233995 Max fold change below threshold 4 1.78825170863238 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777526_at YJL104W.S1 Constituent of the mitochondrial import motor associated with the presequence translocase, along with Ssc1p, Tim44p, Mge1p, and Pam18p; has similarity to J-domain containing proteins 1.78818647761641 202.036079406738 369.213531494141 PAM16 30150 // mitochondrial matrix protein import // inferred from mutant phenotype /// 30150 // mitochondrial matrix protein import // inferred from physical interaction 1405 // presequence translocase-associated import motor // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5744 // mitochondrial inner membrane presequence translocase complex // inferred from direct assay 5515 // protein binding // inferred from direct assay /// 8565 // protein transporter activity // inferred from mutant phenotype /// 8565 // protein transporter activity // inferred from physical interaction 348.542663574219 209.158111572266 194.914047241211 389.884399414063 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL104W /GEN=PAM16 /DB_XREF=GI:6322357 /SEG=NC_001142:+227244,227693 /DEF=Constituent of the mitochondrial import motor associated with the presequence translocase, along with Ssc1p, Tim44p, Mge1p, and Pam18p; has similarity to J-domain containing proteins /NOTE=Pam16p; go_component: mitochondrial inner membrane presequence translocase complex [goid GO:0005744] [evidence IDA] [pmid 42209]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_component: presequence translocase-associated import motor [goid GO:0001405] [evidence IDA] [pmid 14981507]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 42209]; go_function: protein transporter activity [goid GO:0008565] [evidence IMP,IPI] [pmid 42209]; go_process: mitochondrial matrix protein import [goid GO:0030150] [evidence IPI] [pmid 42208]; go_process: mitochondrial matrix protein import [goid GO:0030150] [evidence IMP] [pmid 42209] --- --- --- --- --- --- S0003640 // PAM16 SGDID:S0003640, Chr X from 227244-227693, Verified ORF // sgd // 11 // --- /// GENSCAN00000024058 // cdna:Genscan chromosome:SGD1:X:227244:227693:1 // ensembl // 11 // --- /// YJL104W // cdna:known chromosome:SGD1:X:227244:227693:1 gene:YJL104W // ensembl // 11 // --- --- No cerevisiae_gene 1.06881655147873 -1.66640758493268 1.0593038501027 -1.78818647761641 1.11861312877997 Max fold change below threshold 4 1.78818647761641 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779058_at YGL155W.S1 Beta subunit of geranylgeranyltransferase type I, catalyzes geranylgeranylation to the cysteine residue in proteins containing a C-terminal CaaX sequence ending in Leu or Phe; has substrates important for morphogenesis 1.78778620705221 119.479114532471 123.330848693848 CDC43 6874 // calcium ion homeostasis // inferred from mutant phenotype /// 7264 // small GTPase mediated signal transduction // traceable author statement /// 18348 // protein amino acid geranylgeranylation // inferred from direct assay /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype 5622 // intracellular // traceable author statement /// 5953 // CAAX-protein geranylgeranyltransferase complex // inferred from direct assay 4661 // protein geranylgeranyltransferase activity // inferred from direct assay /// 4871 // signal transducer activity // traceable author statement 116.280090332031 82.9137649536133 156.044464111328 130.381607055664 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL155W /GEN=CDC43 /DB_XREF=GI:6321283 /SEG=NC_001139:+214084,215214 /DEF=Beta subunit of geranylgeranyltransferase type I, catalyzes geranylgeranylation to the cysteine residue in proteins containing a C-terminal CaaX sequence ending in Leu or Phe; has substrates important for morphogenesis /NOTE=Cdc43p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 9891811]; go_function: protein geranylgeranyltransferase activity [goid GO:0004661] [evidence IDA] [pmid 10066831]; go_function: signal transducer activity [goid GO:0004871] [evidence TAS] [pmid 9891811]; go_process: calcium ion homeostasis [goid GO:0006874] [evidence IMP] [pmid 9891811]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IMP] [pmid 9891811]; go_process: protein amino acid geranylgeranylation [goid GO:0018348] [evidence IDA] [pmid 2034682]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence TAS] [pmid 9891811] --- --- --- --- --- --- S0003123 // CDC43 SGDID:S0003123, Chr VII from 214086-215216, Verified ORF // sgd // 11 // --- /// GENSCAN00000019233 // cdna:Genscan chromosome:SGD1:VII:214086:215216:1 // ensembl // 11 // --- /// YGL155W // cdna:known chromosome:SGD1:VII:214086:215216:1 gene:YGL155W // ensembl // 11 // --- --- No cerevisiae_gene 1.55701124278462 -1.40242202723619 1.78778620705221 1.34197061307531 1.12127197943661 Max fold change below threshold 4 1.78778620705221 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770376_at YFL028C.S1 Part of the evolutionarily-conserved CCR4-NOT transcriptional regulatory complex involved in controlling mRNA initiation, elongation, and degradation; putative ABC ATPase; interacts with Ssn2p, Ssn3p, and Ssn8p 1.78770546816107 316.508827209473 237.33162689209 CAF16 6355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 6355 // regulation of transcription, DNA-dependent // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay /// 30014 // CCR4-NOT complex // inferred from physical interaction 16887 // ATPase activity // inferred from sequence similarity 229.601455688477 222.557876586914 410.459777832031 245.061798095703 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL028C /GEN=CAF16 /DB_XREF=GI:14318491 /SEG=NC_001138:-79342,80211 /DEF=CCR4 associated factor /NOTE=Caf16p; go_component: CCR4-NOT complex [goid GO:0030014] [evidence IPI] [pmid 11113136]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence ISS] [pmid 10581358]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence IMP,IPI] [pmid 11113136] --- --- --- --- --- --- S0001866 // CAF16 SGDID:S0001866, Chr VI from 80211-79342, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018561 // cdna:GeneFinder chromosome:SGD1:VI:79342:80211:-1 // ensembl // 11 // --- /// GENSCAN00000023218 // cdna:Genscan chromosome:SGD1:VI:79342:80211:-1 // ensembl // 11 // --- /// YFL028C // cdna:known chromosome:SGD1:VI:79342:80211:-1 gene:YFL028C // ensembl // 11 // --- --- No cerevisiae_gene 1.68935322749587 -1.03164830294744 1.37367095361045 1.78770546816107 1.06733555917957 Max fold change below threshold 4 1.78770546816107 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775068_at YPL176C.S1 Plasma membrane localized protein of unknown function; contains sequence similarity to the transferrin receptor 1.78755506660973 576.645370483398 593.48095703125 --- --- 5886 // plasma membrane // inferred from direct assay 4872 // receptor activity // inferred from sequence similarity 543.669860839844 503.760833740234 649.529907226563 643.292053222656 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL176C /GEN=CUP9 /DB_XREF=GI:6325081 /SEG=NC_001148:-216011,218362 /DEF=Hypothetical ORF /NOTE=Ypl176cp; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12374868]; go_function: receptor activity [goid GO:0004872] [evidence ISS] [pmid 12374868]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0006097 // span:110-127 // numtm:1 S0006097 // YPL176C SGDID:S0006097, Chr XVI from 218362-216011, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017052 // cdna:Genscan chromosome:SGD1:XVI:216011:218362:-1 // ensembl // 11 // --- /// GENEFINDER00000021041 // cdna:GeneFinder chromosome:SGD1:XVI:216011:218362:-1 // ensembl // 11 // --- /// YPL176C // cdna:known chromosome:SGD1:XVI:216011:218362:-1 gene:YPL176C // ensembl // 11 // --- --- No cerevisiae_gene -1.78755506660973 -1.0792221713691 1.37596204181943 1.19471384016614 1.18324023374943 Max fold change below threshold 4 1.78755506660973 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772022_at YLR150W.S1 Protein that binds G4 quadruplex and purine motif triplex nucleic acid; acts with Cdc13p to maintain telomere structure; interacts with ribosomes and subtelomeric Y' DNA; multicopy suppressor of tom1 and pop2 mutations 1.7873826855152 2828.21166992188 4406.21801757813 STM1 723 // telomere maintenance // inferred from mutant phenotype /// 6916 // anti-apoptosis // inferred from direct assay 783 // nuclear telomere cap complex // inferred from genetic interaction /// 5737 // cytoplasm // inferred from direct assay /// 5830 // cytosolic ribosome (sensu Eukaryota) // inferred from direct assay 3677 // DNA binding // inferred from direct assay /// 42162 // telomeric DNA binding // traceable author statement 4790.580078125 2680.220703125 2976.20263671875 4021.85595703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR150W /GEN=STM1 /DB_XREF=GI:6323179 /SEG=NC_001144:+440468,441289 /DEF=Multicopy suppressor of tom1 and pop2 mutations. Genetically interacts with CDC13 to maintain telomere structure. /NOTE=Stm1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nuclear telomere cap complex [goid GO:0000783] [evidence IGI] [pmid 12207228]; go_function: telomeric DNA binding [goid GO:0042162] [evidence TAS] [pmid 12207228]; go_process: anti-apoptosis [goid GO:0006916] [evidence IDA] [pmid 11514626]; go_process: telomere maintenance [goid GO:0000723] [evidence IMP] [pmid 12207228] --- --- --- --- --- --- S0004140 // STM1 SGDID:S0004140, Chr XII from 440468-441289, Verified ORF // sgd // 11 // --- /// GENSCAN00000017936 // cdna:Genscan chromosome:SGD1:XII:440468:441289:1 // ensembl // 11 // --- /// GENEFINDER00000024896 // cdna:GeneFinder chromosome:SGD1:XII:440468:441289:1 // ensembl // 11 // --- /// YLR150W // cdna:known chromosome:SGD1:XII:440468:441289:1 gene:YLR150W // ensembl // 11 // --- --- No cerevisiae_gene -1.05632903269707 -1.7873826855152 -1.35673213001143 -1.60962832940925 -1.19113666160764 Max fold change below threshold 4 1.7873826855152 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778271_at YPR065W.S1 Heme-dependent repressor of hypoxic genes; contains an HMG domain that is responsible for DNA bending activity 1.78709701532461 4902.16284179688 3872.38549804688 ROX1 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 228 // nuclear chromosome // inferred from physical interaction 8301 // DNA bending activity // inferred from direct assay /// 16566 // specific transcriptional repressor activity // inferred from mutant phenotype 4167.4609375 5770.44189453125 4033.8837890625 3577.31005859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR065W /GEN=ROX1 /DB_XREF=GI:6325322 /SEG=NC_001148:+679688,680794 /DEF=Heme-dependent repressor of hypoxic genes; contains an HMG domain that is responsible for DNA bending activity /NOTE=Rox1p; go_component: nuclear chromosome [goid GO:0000228] [evidence IPI] [pmid 7565763]; go_function: DNA bending activity [goid GO:0008301] [evidence IDA] [pmid 7565763]; go_function: specific transcriptional repressor activity [goid GO:0016566] [evidence IMP] [pmid 3062365]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IMP] [pmid 3062365] --- --- --- --- --- --- S0006269 // ROX1 SGDID:S0006269, Chr XVI from 679690-680796, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020759 // cdna:GeneFinder chromosome:SGD1:XVI:679690:680796:1 // ensembl // 11 // --- /// GENSCAN00000017234 // cdna:Genscan chromosome:SGD1:XVI:680203:680796:1 // ensembl // 11 // --- /// YPR065W // cdna:known chromosome:SGD1:XVI:679690:680796:1 gene:YPR065W // ensembl // 11 // --- --- No cerevisiae_gene 1.04922061731982 1.3846421072858 -1.78709701532461 -1.03311378200822 -1.16497056985277 Max fold change below threshold 4 1.78709701532461 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774999_at SPAC16E8.10c.S1 --- 1.78697645447548 --- --- --- --- 2.68196415901184 3.33765912055969 2.89575624465942 1.85540533065796 0.870360970497131 0.904784977436066 0.888427972793579 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16E8.10c /DEF=mitochondrial ribosomal protein S7 --- --- --- --- --- --- SPAC16E8.10c // |||mitochondrial ribosomal protein S7|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.68445143077265 1.24448311859225 -1.78697645447548 1.07971474373705 -1.44548693199063 Max fold change below threshold 3 1.78697645447548 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-YER148wM_at AFFX-YER148wM TATA-binding protein, general transcription factor that interacts with other factors to form the preinitiation complex at promoters, essential for viability 1.78648533547952 1349.32989501953 1095.23754882813 SPT15 6360 // transcription from RNA polymerase I promoter // traceable author statement /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 6384 // transcription initiation from RNA polymerase III promoter // traceable author statement 120 // RNA polymerase I transcription factor complex // traceable author statement /// 126 // transcription factor TFIIIB complex // traceable author statement /// 5634 // nucleus // inferred from direct assay /// 5669 // transcription factor TFIID complex // traceable author statement /// 5669 // transcription factor TFIID complex // inferred from direct assay 3677 // DNA binding // inferred from physical interaction /// 3677 // DNA binding // traceable author statement /// 3701 // RNA polymerase I transcription factor activity // traceable author statement /// 3709 // RNA polymerase III transcription factor activity // traceable author statement /// 16251 // general RNA polymerase II transcription factor activity // traceable author statement 1030.1689453125 1279.55346679688 1419.10632324219 1160.30615234375 6.91405710462334E-10 6.51260601003401E-10 5.77288994385583E-10 4.81612527636344E-10 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /GEN=TFIID /DB_XREF=gb:X16860.1 /DB_XREF=spd:YER148W /NOTE=SIF corresponding to nucleotides 484-724 of gb:X16860.1 /DEF=Yeast gene for transcription initiation factor IID (TFIID). --- --- --- --- --- --- S0000950 // SPT15 SGDID:S0000950, Chr V from 465298-466020, Verified ORF // sgd // 48 // --- /// GENSCAN00000016927 // cdna:Genscan chromosome:SGD1:V:465298:466020:1 // ensembl // 48 // --- /// GENEFINDER00000019595 // cdna:GeneFinder chromosome:SGD1:V:465298:466020:1 // ensembl // 48 // --- /// YER148W // cdna:known chromosome:SGD1:V:465298:466020:1 gene:YER148W // ensembl // 48 // --- YER147C-A // ensembl // 18 // Negative Strand Matching Probes AFFX_control cerevisiae_gene 1.78648533547952 1.24208118738109 -1.21503306729713 1.37754717777064 1.12632608236096 Max fold change below threshold 4 1.78648533547952 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770725_at YEL061C.S1 Kinesin motor protein involved in mitotic spindle assembly and chromosome segregation 1.78567144882509 137.277648925781 260.901473999023 CIN8 70 // mitotic sister chromatid segregation // traceable author statement /// 92 // mitotic anaphase B // inferred from mutant phenotype /// 30472 // mitotic spindle organization and biogenesis in nucleus // traceable author statement 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5871 // kinesin complex // traceable author statement /// 5876 // spindle microtubule // traceable author statement /// 5876 // spindle microtubule // inferred from direct assay 3777 // microtubule motor activity // traceable author statement 242.614593505859 138.687866210938 135.867431640625 279.188354492188 0.00122069998178631 0.00122069998178631 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL061C /GEN=CIN8 /DB_XREF=GI:37362641 /SEG=NC_001137:-36535,39537 /DEF=Kinesin motor protein involved in mitotic spindle assembly and chromosome segregation /NOTE=Cin8p; go_component: kinesin complex [goid GO:0005871] [evidence TAS] [pmid 9153752]; go_component: spindle microtubule [goid GO:0005876] [evidence TAS] [pmid 9153752]; go_function: microtubule motor activity [goid GO:0003777] [evidence TAS] [pmid 9153752]; go_process: mitotic anaphase B [goid GO:0000092] [evidence IMP] [pmid 9813090]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence TAS] [pmid 9153752]; go_process: mitotic spindle assembly (sensu Fungi) [goid GO:0030472] [evidence TAS] [pmid 9153752] --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 2.40000009536743 --- S0000787 // CIN8 SGDID:S0000787, Chr V from 39537-36535, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016754 // cdna:Genscan chromosome:SGD1:V:36535:39537:-1 // ensembl // 11 // --- /// YEL061C // cdna:known chromosome:SGD1:V:36535:39537:-1 gene:YEL061C // ensembl // 11 // --- --- No cerevisiae_gene -1.23357271900235 -1.74935702837085 1.13737505495286 -1.78567144882509 1.1507483966971 Max fold change below threshold 4 1.78567144882509 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777877_at YLR309C.S1 Protein involved in vesicular transport, mediates transport between an endosomal compartment and the Golgi, contains a Golgi-localization (GRIP) domain that interacts with activated Arl1p-GTP to localize Imh1p to the Golgi 1.78534209171324 1619.47619628906 1323.34997558594 IMH1 16192 // vesicle-mediated transport // inferred from mutant phenotype 5794 // Golgi apparatus // inferred from direct assay /// 5829 // cytosol // inferred from direct assay --- 1260.05639648438 1605.02233886719 1633.93005371094 1386.6435546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR309C /GEN=IMH1 /DB_XREF=GI:6323340 /SEG=NC_001144:-749036,751771 /DEF=Protein involved in vesicular transport, mediates transport between an endosomal compartment and the Golgi, contains a Golgi-localization (GRIP) domain that interacts with activated Arl1p-GTP to localize Imh1p to the Golgi /NOTE=Imh1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 9880327]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IMP] [pmid 9880327] --- --- --- --- --- --- S0004300 // IMH1 SGDID:S0004300, Chr XII from 751771-749036, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018059 // cdna:Genscan chromosome:SGD1:XII:749036:751048:-1 // ensembl // 11 // --- /// GENEFINDER00000024814 // cdna:GeneFinder chromosome:SGD1:XII:749036:751702:-1 // ensembl // 11 // --- /// YLR309C // cdna:known chromosome:SGD1:XII:749036:751771:-1 gene:YLR309C // ensembl // 11 // --- --- No cerevisiae_gene -1.78534209171324 1.27377024024106 1.12679050242473 1.29671184422355 1.10046150200603 Max fold change below threshold 4 1.78534209171324 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772950_at YDL213C.S1 Protein with similarity to hydrophilins, which are involved in the adaptive response to hyperosmotic conditions; computational analysis of large-scale protein-protein interaction data suggests a possible role in rRNA processing 1.78525760386683 643.721313476563 607.373657226563 NOP6 6364 // rRNA processing // RCA /// 9269 // response to dessication // inferred from sequence similarity 5730 // nucleolus // inferred from direct assay --- 590.509826660156 709.828735351563 577.613891601563 624.237487792969 0.000732421991415322 0.00195312988944352 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL213C /GEN=NOP6 /DB_XREF=GI:6319988 /SEG=NC_001136:-77290,77967 /DEF=Protein with similarity to hydrophilins, which are involved in the adaptive response to hyperosmotic conditions; computational analysis of large-scale protein-protein interaction data suggests a possible role in rRNA processing /NOTE=Nop6p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: rRNA processing [goid GO:0006364] [evidence TAS] [pmid 14566057]; go_process: response to dessication [goid GO:0009269] [evidence ISS] [pmid 10681550] --- --- --- --- --- --- S0002372 // NOP6 SGDID:S0002372, Chr IV from 77967-77290, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023875 // cdna:GeneFinder chromosome:SGD1:IV:77290:77967:-1 // ensembl // 11 // --- /// YDL213C // cdna:known chromosome:SGD1:IV:77290:77967:-1 gene:YDL213C // ensembl // 11 // --- GENSCAN00000024944 // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene 1.78525760386683 1.20206083506901 -1.29260221402372 -1.02232622041488 1.05711617251752 Max fold change below threshold 4 1.78525760386683 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777859_at YCR086W.S1 Protein that forms a complex with Lrs4p, located in the nucleolus; Lrs4p-Csm1p heterodimer binds to Mam1p at kinetochores during meiosis I to mediate accurate chromosome segregation, may be involved in premeiotic DNA replication 1.78477015703238 222.546875 409.73225402832 CSM1 6260 // DNA replication // inferred from mutant phenotype /// 6260 // DNA replication // inferred from physical interaction /// 45132 // meiotic chromosome segregation // inferred from mutant phenotype /// 45143 // homologous chromosome segregation // inferred from mutant phenotype /// 45143 // homologous chromosome segregation // inferred from physical interaction 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 5635 // nuclear membrane // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 390.821472167969 226.117950439453 218.975799560547 428.643035888672 0.000732421991415322 0.018554700538516 0.00415039015933871 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR086W /GEN=CSM1 /DB_XREF=GI:6319928 /SEG=NC_001135:+263388,263960 /DEF=Protein that forms a complex with Lrs4p, located in the nucleolus; Lrs4p-Csm1p heterodimer binds to Mam1p at kinetochores during meiosis I to mediate accurate chromosome segregation, may be involved in premeiotic DNA replication /NOTE=Csm1p; go_component: nuclear chromosome [goid GO:0000228] [evidence IDA] [pmid 12689592]; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 11489916]; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 12689592]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA replication [goid GO:0006260] [evidence IMP,IPI] [pmid 15023545]; go_process: homologous chromosome segregation [goid GO:0045143] [evidence IMP,IPI] [pmid 12689592]; go_process: meiotic chromosome segregation [goid GO:0045132] [evidence IMP] [pmid 11470404] --- --- --- --- --- --- S0000682 // CSM1 SGDID:S0000682, Chr III from 263388-263960, Verified ORF // sgd // 11 // --- /// GENSCAN00000022519 // cdna:Genscan chromosome:SGD1:III:263388:263960:1 // ensembl // 11 // --- /// GENEFINDER00000023370 // cdna:GeneFinder chromosome:SGD1:III:263388:263960:1 // ensembl // 11 // --- /// YCR086W // cdna:known chromosome:SGD1:III:263388:263960:1 gene:YCR086W // ensembl // 11 // --- --- No cerevisiae_gene 1.08908948764676 -1.72839649133746 1.20350201984346 -1.78477015703238 1.09677452856134 Max fold change below threshold 4 1.78477015703238 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1778539_at SPBC29A3.09c.S1 --- 1.78473283191384 --- --- --- --- 8.55737590789795 11.4203262329102 15.272629737854 8.41918659210205 0.303710997104645 0.303710997104645 0.219482004642487 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC29A3.09c /DEF=ATPase --- --- --- --- --- --- SPBC29A3.09c // |||ATPase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.34230415846774 1.33455937378769 -1.75271250644835 1.78473283191384 -1.01641361838037 Max fold change below threshold 4 1.78473283191384 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775800_at SPAC2F3.14c.S1 --- 1.78436366229999 --- --- --- --- 10.0281238555908 17.89381980896 16.0852661132813 7.66198205947876 0.06494140625 0.0561522990465164 0.030273400247097 0.0461426004767418 M M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F3.14c /DEF=sequence orphan --- --- --- --- --- --- SPAC2F3.14c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.76590960235651 1.78436366229999 -1.16577244862381 1.60401550129574 -1.30881588833595 Max fold change below threshold 4 1.78436366229999 Max fold change below threshold MAMPPP No 4 0 MMPP 0 2 2 No No 1 < x = 2
1777033_at YOR383C.S1 Mannoprotein that is incorporated into the cell wall via a glycosylphosphatidylinositol (GPI) anchor, involved in the retention of siderophore-iron in the cell wall 1.78422468970985 39.8381996154785 39.9421281814575 FIT3 15891 // siderophore transport // inferred from direct assay 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 50.217903137207 43.502815246582 36.173583984375 29.666353225708 0.0107421996071935 0.00292969006113708 0.00195312988944352 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR383C /GEN=FIT3 /DB_XREF=GI:6324959 /SEG=NC_001147:-1060437,1061051 /DEF=Mannoprotein that is incorporated into the cell wall via a glycosylphosphatidylinositol (GPI) anchor, involved in the retention of siderophore-iron in the cell wall /NOTE=Fit3p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: siderochrome transport [goid GO:0015891] [evidence IDA] [pmid 12196168] --- --- --- --- --- --- S0005910 // FIT3 SGDID:S0005910, Chr XV from 1061051-1060437, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017828 // cdna:Genscan chromosome:SGD1:XV:1060437:1061051:-1 // ensembl // 11 // --- /// GENEFINDER00000022713 // cdna:GeneFinder chromosome:SGD1:XV:1060437:1061051:-1 // ensembl // 11 // --- /// YOR383C // cdna:known chromosome:SGD1:XV:1060437:1061051:-1 gene:YOR383C // ensembl // 11 // --- --- No cerevisiae_gene -1.78422468970985 -1.15435984665734 -1.28848824014077 -1.38824793138823 -1.69275619268531 Max fold change below threshold 4 1.78422468970985 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1775005_at YPL013C.S1 Mitochondrial ribosomal protein of the small subunit 1.78384057346709 935.341949462891 1709.13177490234 MRPS16 6412 // protein biosynthesis // inferred from curator 5763 // mitochondrial small ribosomal subunit // inferred from physical interaction /// 5763 // mitochondrial small ribosomal subunit // inferred from sequence similarity 3735 // structural constituent of ribosome // inferred from sequence similarity /// 3735 // structural constituent of ribosome // inferred from physical interaction 1663.09033203125 938.375061035156 932.308837890625 1755.17321777344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL013C /GEN=MRPS16 /DB_XREF=GI:6325244 /SEG=NC_001148:-528980,529345 /DEF=Mitochondrial ribosomal protein of the small subunit /NOTE=Mrps16p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IPI,ISS] [pmid 12392552]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IPI,ISS] [pmid 12392552]; go_process: protein biosynthesis [goid GO:0006412] [evidence IC] [pmid 12392552] --- --- --- --- --- --- S0005934 // MRPS16 SGDID:S0005934, Chr XVI from 529347-528982, reverse complement, Verified ORF // sgd // 11 // --- /// YPL013C // cdna:known chromosome:SGD1:XVI:528982:529347:-1 gene:YPL013C // ensembl // 11 // --- --- No cerevisiae_gene -1.44065280094881 -1.77230875061474 1.05485973466306 -1.78384057346709 1.0553685413045 Max fold change below threshold 4 1.78384057346709 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778021_at YKR023W.S1 Hypothetical protein 1.78357560308927 200.61954498291 238.422592163086 --- --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 213.886383056641 214.046081542969 187.193008422852 262.958801269531 0.000732421991415322 0.00415039015933871 0.00195312988944352 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR023W /GEN=VPS51 /DB_XREF=GI:6322875 /SEG=NC_001143:+483062,484654 /DEF=Hypothetical ORF /NOTE=Ykr023wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001731 // YKR023W SGDID:S0001731, Chr XI from 483062-484654, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022945 // cdna:GeneFinder chromosome:SGD1:XI:483062:484654:1 // ensembl // 11 // --- /// GENSCAN00000018437 // cdna:Genscan chromosome:SGD1:XI:483551:484654:1 // ensembl // 11 // --- /// YKR023W // cdna:known chromosome:SGD1:XI:483062:484654:1 gene:YKR023W // ensembl // 11 // --- --- No cerevisiae_gene -1.78357560308927 1.00074665102119 1.25976835127098 -1.14259813899401 1.22943217567944 Max fold change below threshold 4 1.78357560308927 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769925_at YBR215W.S1 Highly charged, basic protein required for normal cell-cycle regulation of histone gene transcription; mutants display strong synthetic defects with subunits of FACT, a complex that allows RNA Pol II to elongate through nucleosomes 1.78290557343055 267.166290283203 339.26936340332 HPC2 83 // G1/S-specific transcription in mitotic cell cycle // inferred from mutant phenotype 5634 // nucleus // inferred from curator 30528 // transcription regulator activity // traceable author statement 302.700256347656 245.35205078125 288.980529785156 375.838470458984 0.000244141003349796 0.00195312988944352 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR215W /GEN=HPC2 /DB_XREF=GI:6319692 /SEG=NC_001134:+653403,655274 /DEF=Highly charged, basic protein required for normal cell-cycle regulation of histone gene transcription; mutants display strong synthetic defects with subunits of FACT, a complex that allows RNA Pol II to elongate through nucleosomes /NOTE=Hpc2p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 12524332]; go_function: transcription regulator activity [goid GO:0030528] [evidence TAS] [pmid 12524332]; go_process: G1/S-specific transcription in mitotic cell cycle [goid GO:0000083] [evidence IMP] [pmid 1406694] --- --- --- --- --- --- S0000419 // HPC2 SGDID:S0000419, Chr II from 653441-655312, Verified ORF // sgd // 11 // --- /// GENSCAN00000021312 // cdna:Genscan chromosome:SGD1:II:653504:655312:1 // ensembl // 11 // --- /// GENEFINDER00000022113 // cdna:GeneFinder chromosome:SGD1:II:653504:655312:1 // ensembl // 11 // --- /// YBR215W // cdna:known chromosome:SGD1:II:653441:655312:1 gene:YBR215W // ensembl // 11 // --- --- No cerevisiae_gene -1.296428023176 -1.23373843986141 1.78290557343055 -1.04747630081757 1.24161926717144 Max fold change below threshold 4 1.78290557343055 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773992_at YFL037W.S1 Beta-tubulin; associates with alpha-tubulin (Tub1p and Tub3p) to form tubulin dimer, which polymerizes to form microtubules 1.78266929604103 2066.986328125 1962.75817871094 TUB2 70 // mitotic sister chromatid segregation // traceable author statement /// 743 // nuclear migration during conjugation with cellular fusion // traceable author statement /// 30473 // nuclear migration, microtubule-mediated // traceable author statement /// 45143 // homologous chromosome segregation // traceable author statement 5816 // spindle pole body // inferred from direct assay /// 5827 // polar microtubule // traceable author statement /// 5828 // kinetochore microtubule // traceable author statement /// 5880 // nuclear microtubule // traceable author statement /// 5881 // cytoplasmic microtubule // traceable author statement /// 45298 // tubulin // traceable author statement 5200 // structural constituent of cytoskeleton // traceable author statement 1799.95190429688 1633.90869140625 2500.06396484375 2125.564453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL037W /GEN=TUB2 /DB_XREF=GI:14318481 /SEG=NC_001138:+56335,57708 /DEF=Beta-tubulin; associates with alpha-tubulin (Tub1p and Tub3p) to form tubulin dimer, which polymerizes to form microtubules /NOTE=Tub2p; go_component: cytoplasmic microtubule [goid GO:0005881] [evidence TAS]; go_component: kinetochore microtubule [goid GO:0005828] [evidence TAS]; go_component: nuclear microtubule [goid GO:0005880] [evidence TAS] [pmid 9153752]; go_component: polar microtubule [goid GO:0005827] [evidence TAS]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 9585415]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence TAS]; go_process: homologous chromosome segregation [goid GO:0045143] [evidence TAS]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence TAS]; go_process: nuclear migration (sensu Saccharomyces) [goid GO:0000065] [evidence TAS]; go_process: nuclear migration during conjugation with cellular fusion [goid GO:0000743] [evidence TAS] --- --- --- --- --- --- S0001857 // TUB2 SGDID:S0001857, Chr VI from 56335-57708, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018596 // cdna:GeneFinder chromosome:SGD1:VI:56335:57708:1 // ensembl // 11 // --- /// GENSCAN00000023210 // cdna:Genscan chromosome:SGD1:VI:56335:57708:1 // ensembl // 11 // --- /// YFL037W // cdna:known chromosome:SGD1:VI:56335:57708:1 gene:YFL037W // ensembl // 11 // --- --- No cerevisiae_gene 1.78266929604103 -1.10162331210058 -1.30321852031039 1.3889615377364 1.18090069409678 Max fold change below threshold 4 1.78266929604103 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769609_at YGR110W.S1 Hypothetical protein 1.78149337322114 3937.52966308594 2575.70544433594 --- --- --- --- 2669.92358398438 4756.451171875 3118.60815429688 2481.4873046875 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR110W /GEN=CLB6 /DB_XREF=GI:6321548 /SEG=NC_001139:+713711,715048 /DEF=Hypothetical ORF /NOTE=Ygr110wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003342 // YGR110W SGDID:S0003342, Chr VII from 713713-715050, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019426 // cdna:Genscan chromosome:SGD1:VII:713713:715050:1 // ensembl // 11 // --- /// YGR110W // cdna:known chromosome:SGD1:VII:713713:715050:1 gene:YGR110W // ensembl // 11 // --- --- No cerevisiae_gene -1.61401663929659 1.78149337322114 1.19305574694676 1.16805146521944 -1.07593682987655 Max fold change below threshold 4 1.78149337322114 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773233_at YGL212W.S1 Component of the vacuole SNARE complex involved in vacuolar morphogenesis; SNAP-25 homolog; functions with a syntaxin homolog Vam3p in vacuolar protein trafficking 1.78115734204813 139.058616638184 253.621452331543 VAM7 6896 // Golgi to vacuole transport // traceable author statement /// 6906 // vesicle fusion // traceable author statement 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay 5485 // v-SNARE activity // traceable author statement 212.766006469727 119.453796386719 158.663436889648 294.476898193359 0.000244141003349796 0.0107421996071935 0.00292969006113708 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL212W /GEN=VAM7 /DB_XREF=GI:6321226 /SEG=NC_001139:+91435,92385 /DEF=Regulator of vacuolar morphogenesis /NOTE=Vam7p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 11433291]; go_function: v-SNARE activity [goid GO:0005485] [evidence TAS] [pmid 10047442]; go_process: Golgi to vacuole transport [goid GO:0006896] [evidence TAS] [pmid 10047442]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 10047442] --- --- --- --- --- --- S0003180 // VAM7 SGDID:S0003180, Chr VII from 91436-92386, Verified ORF // sgd // 11 // --- /// GENSCAN00000019188 // cdna:Genscan chromosome:SGD1:VII:91460:92386:1 // ensembl // 11 // --- /// GENEFINDER00000021638 // cdna:GeneFinder chromosome:SGD1:VII:91460:92386:1 // ensembl // 11 // --- /// YGL212W // cdna:known chromosome:SGD1:VII:91436:92386:1 gene:YGL212W // ensembl // 11 // --- --- No cerevisiae_gene -1.23002024564885 -1.78115734204813 1.2226240804806 -1.34098952248026 1.38404110261504 Max fold change below threshold 4 1.78115734204813 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1776550_at YDR171W.S1 Small cytosolic stress-induced chaperone that forms barrel-shaped oligomers and suppresses the aggregation of non-native proteins; oligomer dissociation is not required for function; involved in cytoskeleton reorganization after heat shock 1.78083875245799 7904.45483398438 4993.52490234375 HSP42 6950 // response to stress // inferred from expression pattern /// 7010 // cytoskeleton organization and biogenesis // inferred from genetic interaction /// 7010 // cytoskeleton organization and biogenesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5832 // chaperonin-containing T-complex // inferred from physical interaction /// 5856 // cytoskeleton // inferred from physical interaction 51082 // unfolded protein binding // traceable author statement 5712.7021484375 10173.4013671875 5635.50830078125 4274.34765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR171W /GEN=HSP42 /DB_XREF=GI:6320376 /SEG=NC_001136:+806615,807742 /DEF=Similar to HSP26; expression is regulated by stress conditions /NOTE=Hsp42p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytoskeleton [goid GO:0005856] [evidence IPI] [pmid 8576246]; go_function: chaperone activity [goid GO:0003754] [evidence TAS] [pmid 9199338]; go_function: heat shock protein activity [goid GO:0003773] [evidence IEP,ISS] [pmid 8576246]; go_process: cytoskeleton organization and biogenesis [goid GO:0007010] [evidence IGI,IMP] [pmid 9199338]; go_process: response to stress [goid GO:0006950] [evidence IEP] [pmid 8576246] --- --- --- --- --- --- S0002578 // HSP42 SGDID:S0002578, Chr IV from 806616-807743, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023545 // cdna:GeneFinder chromosome:SGD1:IV:806616:807743:1 // ensembl // 11 // --- /// GENSCAN00000025228 // cdna:Genscan chromosome:SGD1:IV:806616:807743:1 // ensembl // 11 // --- /// YDR171W // cdna:known chromosome:SGD1:IV:806616:807743:1 gene:YDR171W // ensembl // 11 // --- --- No cerevisiae_gene -1.12869125571141 1.78083875245799 -1.25717286450055 -1.01369776132626 -1.33650854068558 Max fold change below threshold 4 1.78083875245799 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770717_at YMR044W.S1 Member of a complex (Isw1b) with Isw1p and Ioc2p that exhibits nucleosome-stimulated ATPase activity and acts within coding regions to coordinate transcription elongation with termination and processing, contains a PWWP motif 1.78076901642085 716.411376953125 466.451110839844 IOC4 6338 // chromatin remodeling // inferred from physical interaction 16587 // ISW1 complex // inferred from physical interaction 5515 // protein binding // inferred from direct assay 428.216369628906 670.268310546875 762.554443359375 504.685852050781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR044W /GEN=IOC4 /DB_XREF=GI:6323687 /SEG=NC_001145:+355383,356810 /DEF=Member of a complex (Isw1b) with Isw1p and Ioc2p that exhibits nucleosome-stimulated ATPase activity and acts within coding regions to coordinate transcription elongation with termination and processing, contains a PWWP motif /NOTE=Ioc4p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 12482963]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 12482963]; go_process: chromatin remodeling [goid GO:0006338] [evidence IPI] [pmid 12482963] --- --- --- --- --- --- S0004647 // IOC4 SGDID:S0004647, Chr XIII from 355383-356810, Verified ORF // sgd // 10 // --- /// GENSCAN00000018751 // cdna:Genscan chromosome:SGD1:XIII:355383:356810:1 // ensembl // 10 // --- /// GENEFINDER00000022080 // cdna:GeneFinder chromosome:SGD1:XIII:355383:356810:1 // ensembl // 10 // --- /// YMR044W // cdna:known chromosome:SGD1:XIII:355383:356810:1 gene:YMR044W // ensembl // 10 // --- --- No cerevisiae_gene 1.69365114681701 1.56525616040258 1.20608968461196 1.78076901642085 1.17857673794242 Max fold change below threshold 4 1.78076901642085 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771019_at YOR137C.S1 Protein of unassigned function involved in activation of the Pma1p plasma membrane H+-ATPase by glucose 1.78068517279212 429.006042480469 636.529479980469 SIA1 15992 // proton transport // inferred from mutant phenotype --- --- 564.838684082031 421.680145263672 436.331939697266 708.220275878906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR137C /GEN=SIA1 /DB_XREF=GI:6324711 /SEG=NC_001147:-581813,583681 /DEF=Suppressor of eIF5A /NOTE=Sia1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: proton transport [goid GO:0015992] [evidence IMP] [pmid 9450541] --- --- --- --- --- --- S0005663 // SIA1 SGDID:S0005663, Chr XV from 583681-581813, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017563 // cdna:Genscan chromosome:SGD1:XV:581813:583531:-1 // ensembl // 11 // --- /// YOR137C // cdna:known chromosome:SGD1:XV:581813:583681:-1 gene:YOR137C // ensembl // 11 // --- --- No cerevisiae_gene -1.78068517279212 -1.3394955641766 -1.15247145850392 -1.29451601565983 1.25384520543223 Max fold change below threshold 4 1.78068517279212 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769868_at YML091C.S1 Protein component of mitochondrial RNase P, along with the mitochondrially-encoded RNA subunit RPM1; Rnase P removes 5' extensions from tRNA precursors; Rpm2p is also involved in maturation of RPM1 and in translation of mitochondrial mRNAs 1.78062391847538 2286.88403320313 1698.43194580078 RPM2 1682 // tRNA 5'-leader removal // inferred from direct assay /// 6412 // protein biosynthesis // inferred from mutant phenotype /// 7005 // mitochondrion organization and biogenesis // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay 4526 // ribonuclease P activity // inferred from direct assay 1706.66955566406 2389.9541015625 2183.81396484375 1690.1943359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML091C /GEN=RPM2 /DB_XREF=GI:6323548 /SEG=NC_001145:-87123,90731 /DEF=Protein component of mitochondrial RNase P, along with the mitochondrially-encoded RNA subunit RPM1; Rnase P removes 5' extensions from tRNA precursors; Rpm2p is also involved in maturation of RPM1 and in translation of mitochondrial mRNAs /NOTE=Rpm2p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 8366116]; go_function: ribonuclease P activity [goid GO:0004526] [evidence IDA] [pmid 8366116]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence IGI] [pmid 11404323]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP] [pmid 11404323]; go_process: tRNA 5'-leader removal [goid GO:0001682] [evidence IDA] [pmid 8366116] --- --- --- --- --- --- S0004556 // RPM2 SGDID:S0004556, Chr XIII from 90731-87123, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018642 // cdna:Genscan chromosome:SGD1:XIII:87123:90731:-1 // ensembl // 11 // --- /// GENEFINDER00000022007 // cdna:GeneFinder chromosome:SGD1:XIII:87123:90731:-1 // ensembl // 11 // --- /// YML091C // cdna:known chromosome:SGD1:XIII:87123:90731:-1 gene:YML091C // ensembl // 11 // --- --- No cerevisiae_gene -1.78062391847538 1.4003613608919 1.16413038603646 1.27957632899477 -1.00974752984095 Max fold change below threshold 4 1.78062391847538 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776262_at YDR399W.S1 Dimeric hypoxanthine-guanine phosphoribosyltransferase, catalyzes the formation of both inosine monophosphate and guanosine monophosphate; mutations in the human homolog HPRT1 can cause Lesch-Nyhan syndrome and Kelley-Seegmiller syndrome 1.77999390290225 388.601348876953 643.872222900391 HPT1 6164 // purine nucleotide biosynthesis // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4422 // hypoxanthine phosphoribosyltransferase activity // inferred from mutant phenotype /// 4422 // hypoxanthine phosphoribosyltransferase activity // inferred from genetic interaction /// 4422 // hypoxanthine phosphoribosyltransferase activity // inferred from sequence similarity 621.853881835938 355.423095703125 421.779602050781 665.890563964844 0.0107421996071935 0.0239257998764515 0.014160200022161 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR399W /GEN=HPT1 /DB_XREF=GI:6320607 /SEG=NC_001136:+1270056,1270721 /DEF=enzyme involved in de novo purine biosynthesis /NOTE=Hpt1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: hypoxanthine phosphoribosyltransferase activity [goid GO:0004422] [evidence IGI,IMP,ISS] [pmid 9335580]; go_process: purine nucleotide biosynthesis [goid GO:0006164] [evidence TAS] [pmid 9335580] --- --- --- --- --- --- S0002807 // HPT1 SGDID:S0002807, Chr IV from 1270058-1270723, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023966 // cdna:GeneFinder chromosome:SGD1:IV:1270058:1270723:1 // ensembl // 11 // --- /// GENSCAN00000025417 // cdna:Genscan chromosome:SGD1:IV:1270058:1270723:1 // ensembl // 11 // --- /// YDR399W // cdna:known chromosome:SGD1:IV:1270058:1270723:1 gene:YDR399W // ensembl // 11 // --- --- No cerevisiae_gene 1.77999390290225 -1.74961585038738 1.40150380028216 -1.47435741039243 1.07081515998404 Max fold change below threshold 4 1.77999390290225 Max fold change below threshold PPPPPP No 3 0 PPPP 0 4 0 No No 3 < x
1780217_at YGR161C.S1 Putative component of the protein phosphatase type 2A complex 1.77983130923188 4761.98779296875 2660.43212890625 RTS3 6470 // protein amino acid dephosphorylation // RCA 159 // protein phosphatase type 2A complex // RCA /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 158 // protein phosphatase type 2A activity // RCA 2713.13403320313 4828.9208984375 4695.0546875 2607.73022460938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR161C /GEN=RTS3 /DB_XREF=GI:6321600 /SEG=NC_001139:-808632,809423 /DEF=Hypothetical ORF /NOTE=Rts3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_component: protein phosphatase type 2A complex [goid GO:0000159] [evidence TAS] [pmid 14566057]; go_function: protein phosphatase type 2A activity [goid GO:0000158] [evidence TAS] [pmid 14566057]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0003393 // RTS3 SGDID:S0003393, Chr VII from 809425-808634, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019463 // cdna:Genscan chromosome:SGD1:VII:808634:809398:-1 // ensembl // 11 // --- /// GENEFINDER00000021599 // cdna:GeneFinder chromosome:SGD1:VII:808634:809398:-1 // ensembl // 11 // --- /// YGR161C // cdna:known chromosome:SGD1:VII:808634:809425:-1 gene:YGR161C // ensembl // 11 // --- --- No cerevisiae_gene 1.61658425715403 1.77983130923188 1.25437953416167 1.7304912437212 -1.04041975185893 Max fold change below threshold 4 1.77983130923188 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778869_at YOR256C.S1 Protein of unknown function with similarity to TRE1/YPL176C; required for cell viability 1.77969919312478 1128.37475585938 1098.38500976563 --- --- --- --- 1081.13293457031 1091.251953125 1165.49755859375 1115.63708496094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR256C /GEN=SEC63 /DB_XREF=GI:6324830 /SEG=NC_001147:-808252,810681 /DEF=Protein required for cell viability /NOTE=Yor256cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005782 // span:126-148 // numtm:1 S0005782 // YOR256C SGDID:S0005782, Chr XV from 810681-808252, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000017685 // cdna:Genscan chromosome:SGD1:XV:808252:810681:-1 // ensembl // 10 // --- /// GENEFINDER00000022927 // cdna:GeneFinder chromosome:SGD1:XV:808252:809472:-1 // ensembl // 10 // --- /// YOR256C // cdna:known chromosome:SGD1:XV:808252:810681:-1 gene:YOR256C // ensembl // 10 // --- --- No cerevisiae_gene -1.77969919312478 1.00935964323269 1.13878557344709 1.07803353438397 1.03191480833422 Max fold change below threshold 4 1.77969919312478 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778806_at YGR014W.S1 Mucin family member at the head of the Cdc42p- and MAP kinase-dependent filamentous growth signaling pathway; also functions as an osmosensor in parallel to the Sho1p-mediated pathway; potential Cdc28p substrate 1.77968290869754 260.891075134277 364.917541503906 MSB2 1402 // signal transduction during filamentous growth // inferred from genetic interaction /// 1402 // signal transduction during filamentous growth // inferred from mutant phenotype /// 1402 // signal transduction during filamentous growth // inferred from expression pattern /// 6970 // response to osmotic stress // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from genetic interaction 5887 // integral to plasma membrane // inferred from mutant phenotype /// 5887 // integral to plasma membrane // inferred from sequence similarity /// 30427 // site of polarized growth // inferred from direct assay 5034 // osmosensor activity // inferred from mutant phenotype 348.232452392578 254.195236206055 267.5869140625 381.602630615234 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR014W /GEN=MSB2 /DB_XREF=GI:6321451 /SEG=NC_001139:+516945,520865 /DEF=Protein that functions as an osmosensor in parallel to the Sho1p-mediated pathway, multicopy suppressor of a temperature-sensitive mutation in CDC24, potential Cdc28p substrate /NOTE=Msb2p; go_component: integral to plasma membrane [goid GO:0005887] [evidence IMP,ISS] [pmid 12052881]; go_function: osmosensor activity [goid GO:0005034] [evidence IMP] [pmid 12052881]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IGI] [pmid 1514328]; go_process: response to osmotic stress [goid GO:0006970] [evidence IMP] [pmid 12052881] --- --- --- --- --- S0003246 // span:1186-1208 // numtm:1 S0003246 // MSB2 SGDID:S0003246, Chr VII from 516947-520867, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021419 // cdna:GeneFinder chromosome:SGD1:VII:513163:520867:1 // ensembl // 11 // --- /// GENSCAN00000019352 // cdna:Genscan chromosome:SGD1:VII:516947:520867:1 // ensembl // 11 // --- /// YGR014W // cdna:known chromosome:SGD1:VII:516947:520867:1 gene:YGR014W // ensembl // 11 // --- --- No cerevisiae_gene -1.13033018248817 -1.36994090680085 -1.77968290869754 -1.3013807256331 1.09582730728679 Max fold change below threshold 4 1.77968290869754 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771399_at YPL019C.S1 Vacuolar membrane protein involved in vacuolar polyphosphate accumulation; functions as a regulator of vacuolar H+-ATPase activity and vacuolar transporter chaperones; involved in non-autophagic vacuolar fusion 1.77939321345193 847.044677734375 1209.74542236328 VTC3 42144 // vacuole fusion, non-autophagic // inferred from mutant phenotype 5774 // vacuolar membrane // inferred from direct assay --- 1226.22814941406 839.185546875 854.90380859375 1193.2626953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL019C /GEN=VTC3 /DB_XREF=GI:6325238 /SEG=NC_001148:-514507,517014 /DEF=Phosphate metabolism; transcription is regulated by PHO system /NOTE=Vtc3p; go_component: vacuolar membrane [goid GO:0005774] [evidence IDA] [pmid 11823419]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: vacuole fusion, non-autophagic [goid GO:0042144] [evidence IMP] [pmid 11823419] --- --- --- --- scop // a.4.5.Arginine repressor (ArgR), N-terminal DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Arginine repressor (ArgR), N-terminal DNA-binding domain // 1.39999997615814 S0005940 // span:710-727,739-756,776-798 // numtm:3 S0005940 // VTC3 SGDID:S0005940, Chr XVI from 517016-514509, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017170 // cdna:Genscan chromosome:SGD1:XVI:514509:516365:-1 // ensembl // 11 // --- /// GENEFINDER00000020837 // cdna:GeneFinder chromosome:SGD1:XVI:514509:515936:-1 // ensembl // 11 // --- /// YPL019C // cdna:known chromosome:SGD1:XVI:514509:517016:-1 gene:YPL019C // ensembl // 11 // --- --- No cerevisiae_gene -1.77939321345193 -1.46121218838951 -1.15571074824488 -1.43434634059136 -1.02762631751672 Max fold change below threshold 4 1.77939321345193 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773431_at YML129C.S1 Mitochondrial membrane protein, required for assembly of cytochrome c oxidase 1.77887597690254 1383.47015380859 954.510101318359 COX14 9060 // aerobic respiration // inferred from mutant phenotype /// 16478 // negative regulation of translation // inferred from physical interaction /// 16478 // negative regulation of translation // inferred from genetic interaction 5740 // mitochondrial membrane // inferred from direct assay /// 5743 // mitochondrial inner membrane // inferred from direct assay /// 5759 // mitochondrial matrix // inferred from direct assay /// 16021 // integral to membrane // inferred from direct assay /// 19898 // extrinsic to membrane // inferred from direct assay --- 847.853210449219 1258.71459960938 1508.22570800781 1061.1669921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML129C /GEN=COX14 /DB_XREF=GI:6323506 /SEG=NC_001145:-14542,14754 /DEF=Mitochondrial membrane protein, required for assembly of cytochrome c oxidase /NOTE=Cox14p; go_component: integral to membrane [goid GO:0016021] [evidence IDA] [pmid 7797555]; go_component: mitochondrial membrane [goid GO:0005740] [evidence IDA] [pmid 7797555]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 7797555]; go_process: cytochrome c oxidase biogenesis [goid GO:0008535] [evidence IMP] [pmid 7797555] --- --- --- --- --- S0004598 // span:15-37 // numtm:1 S0004598 // COX14 SGDID:S0004598, Chr XIII from 14754-14542, reverse complement, Verified ORF // sgd // 11 // --- /// YML129C // cdna:known chromosome:SGD1:XIII:14542:14754:-1 gene:YML129C // ensembl // 11 // --- GENSCAN00000018607 // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene -1.0035193761825 1.48459023814095 1.049017268237 1.77887597690254 1.251592821858 Max fold change below threshold 4 1.77887597690254 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776457_at YCL052C.S1 Essential component of glycosylphosphatidylinositol-mannosyltransferase I, required for the autocatalytic post-translational processing of the protease B precursor Prb1p, localizes to ER in lumenal orientation; homolog of mammalian PIG-X 1.77871493964977 1047.12576293945 691.562408447266 PBN1 6506 // GPI anchor biosynthesis // inferred from mutant phenotype /// 16485 // protein processing // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay 30 // mannosyltransferase activity // inferred from mutant phenotype 678.4130859375 887.548034667969 1206.70349121094 704.711730957031 0.00122069998178631 0.00122069998178631 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL052C /GEN=PBN1 /DB_XREF=GI:6319797 /SEG=NC_001135:-34143,35393 /DEF=Protease B Non-derepressible /NOTE=Pbn1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 9649520]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein processing [goid GO:0016485] [evidence IMP] [pmid 9649520] --- --- --- --- --- S0000557 // span:386-405 // numtm:1 S0000557 // PBN1 SGDID:S0000557, Chr III from 35393-34143, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000022425 // cdna:Genscan chromosome:SGD1:III:34143:35393:-1 // ensembl // 10 // --- /// GENEFINDER00000023325 // cdna:GeneFinder chromosome:SGD1:III:34143:35393:-1 // ensembl // 10 // --- /// YCL052C // cdna:known chromosome:SGD1:III:34143:35393:-1 gene:YCL052C // ensembl // 10 // --- --- No cerevisiae_gene -1.51135646687697 1.30827080589323 1.29477864386529 1.77871493964977 1.03876494360835 Max fold change below threshold 4 1.77871493964977 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776918_at SPAC5H10.06c.S1 --- 1.778706973673 --- --- --- --- 8.95462036132813 13.8510446548462 15.9276456832886 6.6453332901001 0.0805663987994194 0.0561522990465164 0.0461426004767418 0.0561522990465164 A M P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC5H10.06c /GEN=adh4 /DEF=alcohol dehydrogenase (PMID 15040954) --- --- --- --- --- --- SPAC5H10.06c // |adh4||alcohol dehydrogenase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.36654474453111 1.54680423021215 -1.42621318344951 1.778706973673 -1.34750507919118 Max fold change below threshold 4 1.778706973673 Max fold change below threshold APMAPM No 4 0 AMPM 1 1 2 No No x = 1
1775363_at YJL132W.S1 Hypothetical protein 1.77866646118219 326.598587036133 450.580932617188 --- --- 5624 // membrane fraction // inferred from direct assay --- 424.063385009766 343.223480224609 309.973693847656 477.098480224609 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL132W /GEN=MRS3 /DB_XREF=GI:6322329 /SEG=NC_001142:+161832,164084 /DEF=Hypothetical ORF /NOTE=Yjl132wp; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 11935221]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003668 // span:7-29 // numtm:1 S0003668 // YJL132W SGDID:S0003668, Chr X from 161832-164084, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000024285 // cdna:GeneFinder chromosome:SGD1:X:161832:164084:1 // ensembl // 11 // --- /// GENSCAN00000024036 // cdna:Genscan chromosome:SGD1:X:162084:164084:1 // ensembl // 11 // --- /// YJL132W // cdna:known chromosome:SGD1:X:161832:164084:1 gene:YJL132W // ensembl // 11 // --- --- No cerevisiae_gene -1.77866646118219 -1.2355313941 1.27385684314489 -1.36806249506509 1.12506407553584 Max fold change below threshold 4 1.77866646118219 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770500_at YBL027W.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl19Bp and has similarity to rat L19 ribosomal protein; rpl19a and rpl19b single null mutations result in slow growth, while the double null mutation is lethal /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl19Bp and has similarity to rat L19 ribosomal protein; rpl19a and rpl19b single null mutations result in slow growth, while the double null mutation is lethal 1.77835757870161 1928.14410400391 2719.583984375 RPL19B /// RPL19A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 2933.396484375 1937.50085449219 1918.78735351563 2505.771484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL027W /GEN=RPL19B /DB_XREF=GI:6319444 /SEG=NC_001134:+168388,169341 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl19Bp and has similarity to rat L19 ribosomal protein; rpl19a and rpl19b single null mutations result in slow growth, while the double null mutation is lethal /NOTE=Rpl19bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0000123 // RPL19B SGDID:S0000123, Chr II from 168426-168427,168812-169379, intron sequence removed, Verified ORF // sgd // 11 // --- /// D17338 // Saccharomyces cerevisiae mRNA for ribosomal protein YL14, complete cds. // gb // 11 // --- /// GENEFINDER00000022168 // cdna:GeneFinder chromosome:SGD1:II:168240:169379:1 // ensembl // 11 // --- /// YBL027W // cdna:known chromosome:SGD1:II:168426:169379:1 gene:YBL027W // ensembl // 11 // --- --- No cerevisiae_gene 1.21452324690275 -1.51401042098835 -1.77835757870161 -1.5287762236917 -1.17065602456828 Max fold change below threshold 4 1.77835757870161 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780130_at YDR435C.S1 Carboxyl methyl transferase, methylates the C terminus of the protein phosphatase 2A catalytic subunit (Pph21p or Pph22p), which is important for complex formation with regulatory subunits 1.77820684661349 680.694458007813 955.552612304688 PPM1 6481 // C-terminal protein amino acid methylation // inferred from direct assay --- 3880 // C-terminal protein carboxyl methyltransferase activity // inferred from direct assay 935.888366699219 634.540649414063 726.848266601563 975.216857910156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR435C /GEN=PPM1 /DB_XREF=GI:6320643 /SEG=NC_001136:-1332971,1333957 /DEF=Carboxyl methyl transferase, methylates the C terminus of the protein phosphatase 2A catalytic subunit (Pph21p or Pph22p), which is important for complex formation with regulatory subunits /NOTE=Ppm1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: C-terminal protein carboxyl methyltransferase activity [goid GO:0003880] [evidence IDA] [pmid 11060018]; go_process: C-terminal protein amino acid methylation [goid GO:0006481] [evidence IDA] [pmid 11060018] --- --- --- --- --- --- S0002843 // PPM1 SGDID:S0002843, Chr IV from 1333959-1332973, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025442 // cdna:Genscan chromosome:SGD1:IV:1332973:1333959:-1 // ensembl // 11 // --- /// YDR435C // cdna:known chromosome:SGD1:IV:1332973:1333959:-1 gene:YDR435C // ensembl // 11 // --- --- No cerevisiae_gene -1.77820684661349 -1.47490687564843 1.42779993863148 -1.28759798943326 1.04202263070076 Max fold change below threshold 4 1.77820684661349 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775349_at YJL020C.S1 Protein possibly involved in assembly of actin patches; interacts with an actin assembly factor Las17p and with the SH3 domains of Type I myosins Myo3p and Myo5p; localized predominantly to cortical actin patches 1.77735125072105 2431.75646972656 1617.84210205078 BBC1 30036 // actin cytoskeleton organization and biogenesis // inferred from genetic interaction /// 30036 // actin cytoskeleton organization and biogenesis // inferred from physical interaction 30479 // actin cortical patch // inferred from direct assay 17024 // myosin I binding // inferred from direct assay 1601.521484375 2624.91040039063 2238.6025390625 1634.16271972656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL020C /GEN=BBC1 /DB_XREF=GI:14627173 /SEG=NC_001142:-398853,402326 /DEF=Shows synthetic fitness defect with bni1 mutants and associates with the Bee1p-Vrp1p-Myo3/5p complex /NOTE=Bbc1p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 11901111]; go_function: myosin I binding [goid GO:0017024] [evidence IDA] [pmid 11901111]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence IGI,IPI] [pmid 11901111] --- --- --- --- scop // a.2.7.Phenylalanyl-tRNA synthetase (PheRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Phenylalanyl-tRNA synthetase (PheRS) // 2.29999995231628 --- S0003557 // BBC1 SGDID:S0003557, Chr X from 402326-398853, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024121 // cdna:Genscan chromosome:SGD1:X:398853:402326:-1 // ensembl // 11 // --- /// GENEFINDER00000024496 // cdna:GeneFinder chromosome:SGD1:X:398853:402326:-1 // ensembl // 11 // --- /// YJL020C // cdna:known chromosome:SGD1:X:398853:402326:-1 gene:YJL020C // ensembl // 11 // --- --- No cerevisiae_gene -1.77735125072105 1.63901041977904 1.00451116735916 1.3977973826159 1.02038139086489 Max fold change below threshold 4 1.77735125072105 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772946_at YEL052W.S1 Putative ATPase of the CDC48/PAS1/SEC18 (AAA) family, localized to mitochondria 1.77728316431678 1216.66235351563 1866.63842773438 AFG1 --- 5739 // mitochondrion // inferred from direct assay 16887 // ATPase activity // inferred from sequence similarity 1836.99267578125 1033.59594726563 1399.72875976563 1896.2841796875 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL052W /GEN=AFG1 /DB_XREF=GI:6320783 /SEG=NC_001137:+56571,58100 /DEF=Putative ATPase of the CDC48/PAS1/SEC18 (AAA) family, localized to mitochondria /NOTE=Afg1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: ATPase activity [goid GO:0016887] [evidence ISS] [pmid 1441755]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000778 // AFG1 SGDID:S0000778, Chr V from 56571-58100, Verified ORF // sgd // 11 // --- /// GENSCAN00000016761 // cdna:Genscan chromosome:SGD1:V:56571:58100:1 // ensembl // 11 // --- /// GENEFINDER00000019628 // cdna:GeneFinder chromosome:SGD1:V:56970:58100:1 // ensembl // 11 // --- /// YEL052W // cdna:known chromosome:SGD1:V:56571:58100:1 gene:YEL052W // ensembl // 11 // --- M94535 // gb // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.4282717559863 -1.77728316431678 1.07552600752599 -1.31239189233266 1.03227639646469 Max fold change below threshold 4 1.77728316431678 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772328_at YBL039W-A.S1 Identified by homology to Ashbya gossypii 1.77646360697349 1776.72662353516 2210.89697265625 --- --- --- --- 2360.36303710938 2224.76684570313 1328.68640136719 2061.43090820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL039W-A /GEN=ERD2 /DB_XREF=GI:33438763 /SEG=NC_001134:+143358,143537 /DEF=Identified by homology to Ashbya gossypii /NOTE=Ybl039w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028517 // span:20-42 // numtm:1 S0028517 // YBL039W-A SGDID:S0028517, Chr II from 143396-143575, Uncharacterized ORF // sgd // 11 // --- /// YBL039W-A // cdna:known chromosome:SGD1:II:143396:143575:1 gene:YBL039W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.67623536151105 -1.06094849519541 1.0983877095343 -1.77646360697349 -1.14501195636327 Max fold change below threshold 4 1.77646360697349 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773513_at YNL098C.S1 GTP-binding protein that regulates the nitrogen starvation response, sporulation, and filamentous growth; farnesylation and palmitoylation required for activity and localization to plasma membrane; homolog of mammalian Ras proto-oncogenes 1.77634885697891 3836.78283691406 2127.63891601563 RAS2 1302 // replicative cell aging // inferred from mutant phenotype /// 7124 // pseudohyphal growth // inferred from mutant phenotype /// 7190 // adenylate cyclase activation // traceable author statement /// 7265 // Ras protein signal transduction // traceable author statement /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype 5886 // plasma membrane // traceable author statement /// 5886 // plasma membrane // inferred from direct assay 3924 // GTPase activity // traceable author statement 2195.01440429688 3899.111328125 3774.45434570313 2060.26342773438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL098C /GEN=RAS2 /DB_XREF=GI:6324231 /SEG=NC_001146:-439602,440570 /DEF=Ras proto-oncogene homolog. Ras2 is involved in growth on non-fermentable carbon sources, the starvation response, sporulation, pseudohyphal growth and aging. /NOTE=Ras2p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 11914276]; go_component: plasma membrane [goid GO:0005886] [evidence TAS] [pmid 7708760]; go_function: GTPase activity [goid GO:0003924] [evidence TAS] [pmid 7708760]; go_process: RAS protein signal transduction [goid GO:0007265] [evidence TAS] [pmid 3891097]; go_process: adenylate cyclase activation [goid GO:0007190] [evidence TAS] [pmid 3891097]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 1547504]; go_process: replicative cell aging [goid GO:0001302] [evidence IMP] [pmid 12839995]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 2558958] --- --- --- --- --- --- S0005042 // RAS2 SGDID:S0005042, Chr XIV from 440570-439602, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020479 // cdna:GeneFinder chromosome:SGD1:XIV:439511:440351:-1 // ensembl // 10 // --- /// GENSCAN00000019955 // cdna:Genscan chromosome:SGD1:XIV:439602:440351:-1 // ensembl // 11 // --- /// YNL098C // cdna:known chromosome:SGD1:XIV:439602:440570:-1 gene:YNL098C // ensembl // 11 // --- --- No cerevisiae_gene 1.67011190020353 1.77634885697891 -1.05769241628484 1.71955789370421 -1.06540473162244 Max fold change below threshold 4 1.77634885697891 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770157_at YDR361C.S1 Essential protein involved in nuclear export of Mss4p, which is a lipid kinase that generates phosphatidylinositol 4,5-biphosphate and plays a role in actin cytoskeleton organization and vesicular transport 1.77627835819506 461.845947265625 741.404388427734 BCP1 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 717.997009277344 433.560699462891 490.131195068359 764.811767578125 0.000244141003349796 0.00122069998178631 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR361C /GEN=BCP1 /DB_XREF=GI:6320568 /SEG=NC_001136:-1195400,1196251 /DEF=Hypothetical ORF /NOTE=Bcp1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002769 // BCP1 SGDID:S0002769, Chr IV from 1196253-1195402, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023437 // cdna:GeneFinder chromosome:SGD1:IV:1195402:1196253:-1 // ensembl // 11 // --- /// GENSCAN00000025384 // cdna:Genscan chromosome:SGD1:IV:1195402:1196253:-1 // ensembl // 11 // --- /// YDR361C // cdna:known chromosome:SGD1:IV:1195402:1196253:-1 gene:YDR361C // ensembl // 11 // --- --- No cerevisiae_gene 1.77627835819506 -1.65604726204848 -1.24930855417491 -1.46490779714032 1.06520188482108 Max fold change below threshold 4 1.77627835819506 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774224_at YDR221W.S1 Hypothetical protein 1.77599036192261 335.848220825195 240.427604675293 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 230.713317871094 261.951812744141 409.74462890625 250.141891479492 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR221W /GEN=SPR28 /DB_XREF=GI:6320427 /SEG=NC_001136:+907322,909430 /DEF=Hypothetical ORF /NOTE=Ydr221wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 3.79999995231628 --- S0002629 // YDR221W SGDID:S0002629, Chr IV from 907324-909432, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025269 // cdna:Genscan chromosome:SGD1:IV:907324:909432:1 // ensembl // 11 // --- /// YDR221W // cdna:known chromosome:SGD1:IV:907324:909432:1 gene:YDR221W // ensembl // 11 // --- GENEFINDER00000023554 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene -1.14811655700225 1.13539961698484 1.36690725705005 1.77599036192261 1.08421088902745 Max fold change below threshold 4 1.77599036192261 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778168_at YLR085C.S1 Nuclear actin-related protein involved in chromatin remodeling, component of chromatin-remodeling enzyme complexes 1.77594333265823 399.94596862793 595.88720703125 ARP6 6338 // chromatin remodeling // inferred from direct assay /// 6338 // chromatin remodeling // inferred from genetic interaction /// 6338 // chromatin remodeling // inferred from physical interaction /// 6623 // protein-vacuolar targeting // inferred from mutant phenotype 812 // SWR1 complex // inferred from physical interaction /// 5737 // cytoplasm // inferred from direct assay --- 563.029968261719 317.031494140625 482.860443115234 628.744445800781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR085C /GEN=ARP6 /DB_XREF=GI:6323114 /SEG=NC_001144:-300674,301990 /DEF=Actin-related protein. Part of the carboxypeptidase Y pathway. /NOTE=Arp6p; go_component: SWR1 complex [goid GO:0000812] [evidence IPI] [pmid 14690608]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11011149]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 14645854]; go_process: chromatin remodeling [goid GO:0006338] [evidence IGI,IPI] [pmid 14690608]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 12134085] --- --- --- --- --- --- S0004075 // ARP6 SGDID:S0004075, Chr XII from 301990-300674, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017884 // cdna:Genscan chromosome:SGD1:XII:300674:301990:-1 // ensembl // 11 // --- /// GENEFINDER00000024710 // cdna:GeneFinder chromosome:SGD1:XII:300674:301990:-1 // ensembl // 11 // --- /// YLR085C // cdna:known chromosome:SGD1:XII:300674:301990:-1 gene:YLR085C // ensembl // 11 // --- --- No cerevisiae_gene -1.46904640721805 -1.77594333265823 1.33380984473938 -1.16603042616053 1.11671577223846 Max fold change below threshold 4 1.77594333265823 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769692_at SPAC23C11.14.S1 --- 1.77588334146975 --- --- --- --- 10.9800319671631 9.83250141143799 10.2338666915894 7.16130638122559 0.0461426004767418 0.194580003619194 0.194580003619194 0.274170011281967 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23C11.14 /GEN=zhf1 /DEF=CDF metal cation transporter --- --- --- --- --- --- D89236 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1495. // gb // 10 // --- /// SPAC23C11.14 // |zhf1||CDF metal cation transporter|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.77588334146975 -1.11670789636401 -1.23629569091808 -1.07291137338998 -1.53324426894356 Max fold change below threshold 4 1.77588334146975 Max fold change below threshold PAAAAA No 4 0 PAAA 3 1 0 No No x = 1
1776017_at YDR392W.S1 Subunit of the SAGA and SAGA-like transcriptional regulatory complexes, interacts with Spt15p to activate transcription of some RNA polymerase II-dependent genes, also functions to inhibit transcription at some promoters 1.77559969416624 650.963256835938 1180.47766113281 SPT3 747 // conjugation with cellular fusion // traceable author statement /// 1403 // invasive growth (sensu Saccharomyces) // inferred from direct assay /// 7124 // pseudohyphal growth // inferred from direct assay /// 16568 // chromatin modification // traceable author statement /// 16573 // histone acetylation // traceable author statement /// 30437 // sporulation (sensu Fungi) // traceable author statement 124 // SAGA complex // inferred from direct assay /// 46695 // SLIK (SAGA-like) complex // inferred from physical interaction 3712 // transcription cofactor activity // inferred from mutant phenotype /// 3712 // transcription cofactor activity // inferred from direct assay 1153.35766601563 652.367004394531 649.559509277344 1207.59765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR392W /GEN=SPT3 /DB_XREF=GI:6320600 /SEG=NC_001136:+1258684,1259697 /DEF=Subunit of the SAGA and SAGA-like transcriptional regulatory complexes, interacts with Spt15p to activate transcription of some RNA polymerase II-dependent genes, also functions to inhibit trancription at some promoters /NOTE=Spt3p; go_component: SAGA complex [goid GO:0000124] [evidence IDA] [pmid 9674426]; go_function: transcription cofactor activity [goid GO:0003712] [evidence IDA] [pmid 11485989]; go_function: transcription cofactor activity [goid GO:0003712] [evidence IMP] [pmid 9858534]; go_process: chromatin modification [goid GO:0016568] [evidence TAS] [pmid 10839822]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence TAS] [pmid 12072450]; go_process: histone acetylation [goid GO:0016573] [evidence TAS] [pmid 10839822]; go_process: invasive growth (sensu Saccharomyces) [goid GO:0001403] [evidence IDA] [pmid 12072450]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IDA] [pmid 12072450]; go_process: sporulation (sensu Fungi) [goid GO:0030437] [evidence TAS] [pmid 12072450] --- --- --- --- --- --- S0002800 // SPT3 SGDID:S0002800, Chr IV from 1258686-1259699, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023524 // cdna:GeneFinder chromosome:SGD1:IV:1258686:1259699:1 // ensembl // 11 // --- /// GENSCAN00000025411 // cdna:Genscan chromosome:SGD1:IV:1258689:1259699:1 // ensembl // 11 // --- /// YDR392W // cdna:known chromosome:SGD1:IV:1258686:1259699:1 gene:YDR392W // ensembl // 11 // --- --- No cerevisiae_gene -1.18947579656292 -1.7679583091209 1.00900595302481 -1.77559969416624 1.04702790108618 Max fold change below threshold 4 1.77559969416624 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770136_at YJR123W.S1 Protein component of the small (40S) ribosomal subunit, the least basic of the non-acidic ribosomal proteins; phosphorylated in vivo; essential for viability; has similarity to E. coli S7 and rat S5 ribosomal proteins 1.77558563687139 3785.53137207031 5572.13354492188 RPS5 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 6453.58837890625 3936.4375 3634.62524414063 4690.6787109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR123W /GEN=RPS5 /DB_XREF=GI:6322583 /SEG=NC_001142:+651816,652493 /DEF=Protein component of the small (40S) ribosomal subunit, the least basic of the non-acidic ribosomal proteins; phosphorylated in vivo; essential for viability; has similarity to E. coli S7 and rat S5 ribosomal proteins /NOTE=Rps5p; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0003884 // RPS5 SGDID:S0003884, Chr X from 651816-652493, Verified ORF // sgd // 11 // --- /// GENSCAN00000024229 // cdna:Genscan chromosome:SGD1:X:651816:652493:1 // ensembl // 11 // --- /// GENEFINDER00000024360 // cdna:GeneFinder chromosome:SGD1:X:651816:652493:1 // ensembl // 11 // --- /// YJR123W // cdna:known chromosome:SGD1:X:651816:652493:1 gene:YJR123W // ensembl // 11 // --- --- No cerevisiae_gene -1.13246469291855 -1.63944896341076 -1.49984873223313 -1.77558563687139 -1.37583253439595 Max fold change below threshold 4 1.77558563687139 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776295_at YDR409W.S1 SUMO ligase that promotes the attachment of sumo (Smt3p; small ubiquitin-related modifier) to proteins; binds Ubc9p and may bind septins; specifically required for sumoylation of septins in vivo; localized to the septin ring 1.77366967578553 258.800186157227 467.507568359375 SIZ1 16925 // protein sumoylation // inferred from mutant phenotype /// 16925 // protein sumoylation // inferred from sequence similarity 5940 // septin ring // inferred from direct assay 19789 // SUMO ligase activity // inferred from mutant phenotype /// 19789 // SUMO ligase activity // inferred from physical interaction /// 19789 // SUMO ligase activity // inferred from direct assay 447.572021484375 252.342376708984 265.257995605469 487.443115234375 0.00195312988944352 0.018554700538516 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR409W /GEN=SIZ1 /DB_XREF=GI:6320617 /SEG=NC_001136:+1289394,1292108 /DEF=Sap and mIZ. Contains two known protein motifs: SAP (DNA binding) and MIZ-finger; ubiquitin-like protein ligase 1 /NOTE=Siz1p; go_component: septin ring [goid GO:0005940] [evidence IDA] [pmid 11587849]; go_function: SUMO ligase activity [goid GO:0019789] [evidence IDA] [pmid 11577116]; go_function: SUMO ligase activity [goid GO:0019789] [evidence IMP,IPI] [pmid 11587849]; go_process: protein sumoylation [goid GO:0016925] [evidence IMP,ISS] [pmid 11587849] --- --- --- --- --- --- S0002817 // SIZ1 SGDID:S0002817, Chr IV from 1289396-1292110, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023789 // cdna:GeneFinder chromosome:SGD1:IV:1290095:1292110:1 // ensembl // 11 // --- /// GENSCAN00000025425 // cdna:Genscan chromosome:SGD1:IV:1291115:1292110:1 // ensembl // 11 // --- /// YDR409W // cdna:known chromosome:SGD1:IV:1289396:1292110:1 gene:YDR409W // ensembl // 11 // --- --- No cerevisiae_gene -1.1531396038922 -1.77366967578553 -1.05322029881615 -1.68730831454397 1.08908307900428 Max fold change below threshold 4 1.77366967578553 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1772047_at YNL101W.S1 Vacuolar transporter, exports large neutral amino acids from the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters 1.77334045332262 2738.81921386719 1691.30572509766 AVT4 15804 // neutral amino acid transport // inferred from genetic interaction /// 15804 // neutral amino acid transport // inferred from mutant phenotype 5773 // vacuole // inferred from mutant phenotype 15175 // neutral amino acid transporter activity // inferred from genetic interaction /// 15175 // neutral amino acid transporter activity // inferred from sequence similarity /// 15175 // neutral amino acid transporter activity // inferred from mutant phenotype 1663.72485351563 2950.3505859375 2527.28784179688 1718.88659667969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL101W /GEN=AVT4 /DB_XREF=GI:6324228 /SEG=NC_001146:+434999,437140 /DEF=Vacuolar transporter, exports large neutral amino acids from the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters /NOTE=Avt4p; go_component: vacuole [goid GO:0005773] [evidence IMP] [pmid 11274162]; go_function: neutral amino acid transporter activity [goid GO:0015175] [evidence IGI,IMP,ISS] [pmid 11274162]; go_process: neutral amino acid transport [goid GO:0015804] [evidence IGI,IMP] [pmid 11274162] --- --- --- --- --- S0005045 // span:303-322,327-349,374-396,409-431,438-460,480-502,515-537,557-579,625-642,652-671,692-711 // numtm:11 S0005045 // AVT4 SGDID:S0005045, Chr XIV from 434999-437140, Verified ORF // sgd // 11 // --- /// GENSCAN00000019952 // cdna:Genscan chromosome:SGD1:XIV:434999:437140:1 // ensembl // 11 // --- /// YNL101W // cdna:known chromosome:SGD1:XIV:434999:437140:1 gene:YNL101W // ensembl // 11 // --- --- No cerevisiae_gene -1.45001692668077 1.77334045332262 -1.15641311230658 1.51905396884374 1.03315556839071 Max fold change below threshold 4 1.77334045332262 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776533_at SPAPB1A10.12c.S1 --- 1.77272170334686 --- --- --- --- 8.95479774475098 14.0804834365845 7.84526538848877 8.02204322814941 0.334473013877869 0.432372987270355 0.24609400331974 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB1A10.12c /DEF=D-arabinono-1,4-lactone oxidase activity (predicted) --- --- --- --- --- --- SPAPB1A10.12c // |alo1||D-arabinono-1,4-lactone oxidase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.77272170334686 1.57239547312367 -1.14963846780431 -1.14142700104068 -1.11627393297116 Max fold change below threshold 4 1.77272170334686 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770569_at YKR057W.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps21Bp and has similarity to rat S21 ribosomal protein 1.77238180845983 3839.11157226563 5989.14697265625 RPS21A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 6368.74853515625 4084.8955078125 3593.32763671875 5609.54541015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR057W /GEN=RPS21A /DB_XREF=GI:6322910 /SEG=NC_001143:+551299,551884 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps21Bp and has similarity to rat S21 ribosomal protein /NOTE=Rps21ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0001765 // RPS21A SGDID:S0001765, Chr XI from 551299-551322,551645-551884, intron sequence removed, Verified ORF // sgd // 11 // --- /// YKR057W // cdna:known chromosome:SGD1:XI:551299:551884:1 gene:YKR057W // ensembl // 11 // --- --- No cerevisiae_gene 1.1172310745594 -1.55909704984517 -1.3375722819584 -1.77238180845983 -1.13534129229535 Max fold change below threshold 4 1.77238180845983 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771550_at YAL064W-B.S1 Hypothetical protein 1.7722285906292 47.9138660430908 31.991641998291 --- --- --- --- 32.0832862854004 38.9688148498535 56.8589172363281 31.8999977111816 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL064W-B /GEN=SEO1 /DB_XREF=GI:6319253 /SEG=NC_001133:+12047,12427 /DEF=Hypothetical ORF /NOTE=Yal064w-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002141 // span:35-54,69-91,96-118 // numtm:3 S0002141 // YAL064W-B SGDID:S0002141, Chr I from 12047-12427, Uncharacterized ORF // sgd // 11 // --- /// YAL064W-B // cdna:known chromosome:SGD1:I:12047:12427:1 gene:YAL064W-B // ensembl // 11 // --- S0000059 // sgd // 7 // Negative Strand Matching Probes /// S0000084 // sgd // 5 // Negative Strand Matching Probes /// S0001254 // sgd // 4 // Negative Strand Matching Probes /// GENEFINDER00000018235 // ensembl // 11 // Negative Strand Matching Probes /// GENEFINDER00000018194 // ensembl // 7 // Negative Strand Matching Probes /// GENSCAN00000020323 // ensembl // 7 // Negative Strand Matching Probes /// GENEFINDER00000018241 // ensembl // 5 // Negative Strand Matching Probes /// GENSCAN00000020397 // ensembl // 5 // Negative Strand Matching Probes /// GENSCAN00000016733 // ensembl // 5 // Negative Strand Matching Probes /// GENEFINDER00000020199 // ensembl // 5 // Negative Strand Matching Probes /// YAL063C // ensembl // 7 // Negative Strand Matching Probes /// YAR050W // ensembl // 5 // Negative Strand Matching Probes /// YHR211W // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene -1.15136185207035 1.2146141920501 1.55737267522595 1.7722285906292 -1.005745723742 Max fold change below threshold 4 1.7722285906292 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778482_at SPAPJ760.03c.S1 --- 1.77220693633576 --- --- --- --- 8.36896896362305 14.7000045776367 10.3559799194336 7.17367267608643 0.014160200022161 0.0461426004767418 0.00805663969367743 0.018554700538516 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPJ760.03c /GEN=adg1 /DEF=glycoprotein (predicted) --- --- --- --- --- --- SPAPJ760.03c // |adg1||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.77220693633576 1.75648931684804 -1.31482278210088 1.23742601561165 -1.16662264108051 Max fold change below threshold 4 1.77220693633576 Max fold change below threshold PAPAPP No 4 0 PPPP 0 4 0 No No 3 < x
1770639_at YFR045W.S1 Hypothetical protein 1.772060382119 336.24072265625 507.550369262695 --- 6810 // transport // inferred from sequence similarity 5743 // mitochondrial inner membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity 484.232696533203 273.259704589844 399.221740722656 530.868041992188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR045W /GEN=ERJ5 /DB_XREF=GI:42742174 /SEG=NC_001138:+242129,242986 /DEF=Hypothetical ORF /NOTE=Yfr045wp; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence ISS] [pmid 10930523]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 10930523]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 10930523] --- --- --- --- --- --- S0001941 // YFR045W SGDID:S0001941, Chr VI from 242129-242986, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000023281 // cdna:Genscan chromosome:SGD1:VI:242129:242986:1 // ensembl // 10 // --- /// YFR045W // cdna:known chromosome:SGD1:VI:242129:242986:1 gene:YFR045W // ensembl // 10 // --- GENEFINDER00000018509 // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene -1.30654789989258 -1.772060382119 1.54392838571463 -1.21294169915863 1.09630771691557 Max fold change below threshold 4 1.772060382119 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773317_at SPAC6G9.15c.S1 --- 1.7713346918231 --- --- --- --- 21.4859504699707 14.0447454452515 18.4822368621826 17.0039558410645 0.111571997404099 0.0805663987994194 0.129638999700546 0.0239257998764515 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6G9.15c /DEF=sequence orphan --- --- --- --- --- --- SPAC6G9.15c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.53189480772111 -1.52982128111372 -1.7713346918231 -1.16251894346913 -1.26358540746632 Max fold change below threshold 4 1.7713346918231 Max fold change below threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1776757_at YPL241C.S1 Tubulin folding factor C (putative) involved in beta-tubulin (Tub2p) folding; isolated as mutant with increased chromosome loss and sensitivity to benomyl 1.77131427585944 105.907066345215 88.0315742492676 CIN2 7017 // microtubule-based process // traceable author statement --- --- 88.5658187866211 107.825080871582 103.989051818848 87.4973297119141 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL241C /GEN=CIN2 /DB_XREF=GI:6325015 /SEG=NC_001148:-95372,96258 /DEF=Tubulin folding factor C (putative) involved in beta-tubulin (Tub2p) folding; isolated as mutant with increased chromosome loss and sensitivity to benomyl /NOTE=Cin2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 9215891]; go_process: microtubule-based process [goid GO:0007017] [evidence TAS] [pmid 9215891] --- --- --- --- --- --- S0006162 // CIN2 SGDID:S0006162, Chr XVI from 96258-96234,96153-95372, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YPL241C // cdna:known chromosome:SGD1:XVI:95372:96258:-1 gene:YPL241C // ensembl // 11 // --- --- No cerevisiae_gene 1.77131427585944 1.21745705452531 1.30320431607911 1.17414430582283 -1.01221167638173 Max fold change below threshold 4 1.77131427585944 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772674_at YFL018C.S1 Dihydrolipoamide dehydrogenase, the lipoamide dehydrogenase component (E3) of the pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase multi-enzyme complexes 1.77123753375865 6337.564453125 3966.14282226563 LPD1 6086 // acetyl-CoA biosynthesis from pyruvate // traceable author statement /// 6546 // glycine catabolism // inferred from mutant phenotype /// 6550 // isoleucine catabolism // inferred from mutant phenotype /// 6552 // leucine catabolism // inferred from mutant phenotype /// 6564 // L-serine biosynthesis // inferred from mutant phenotype /// 6574 // valine catabolism // inferred from mutant phenotype 5960 // glycine cleavage complex // traceable author statement /// 5967 // pyruvate dehydrogenase complex (sensu Eukaryota) // traceable author statement /// 9353 // oxoglutarate dehydrogenase complex (sensu Eukaryota) // inferred from direct assay /// 42645 // mitochondrial nucleoid // inferred from direct assay 4148 // dihydrolipoyl dehydrogenase activity // inferred from direct assay /// 4375 // glycine dehydrogenase (decarboxylating) activity // traceable author statement /// 4591 // oxoglutarate dehydrogenase (succinyl-transferring) activity // inferred from curator /// 4739 // pyruvate dehydrogenase (acetyl-transferring) activity // inferred from curator 4088.85034179688 7242.3251953125 5432.8037109375 3843.43530273438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL018C /GEN=LPD1 /DB_XREF=GI:14318501 /SEG=NC_001138:-101622,103121 /DEF=an FAD flavoprotein which contains a pair of redox-active cysteines involved in the transfer of reducing equivalents from the FAD cofactor to the substrate /NOTE=Lpd1p; go_component: mitochondrial matrix [goid GO:0005759] [evidence NAS] [pmid 9847139]; go_component: mitochondrial nucleoid [goid GO:0042645] [evidence IDA] [pmid 11926067]; go_component: pyruvate dehydrogenase complex (sensu Eukarya) [goid GO:0005967] [evidence TAS]; go_function: dihydrolipoyl dehydrogenase activity [goid GO:0004148] [evidence IDA] [pmid 2821168]; go_process: L-serine biosynthesis [goid GO:0006564] [evidence IMP] [pmid 7498764]; go_process: acetyl-CoA biosynthesis from pyruvate [goid GO:0006086] [evidence TAS]; go_process: glycine catabolism [goid GO:0006546] [evidence IMP] [pmid 7498764]; go_process: isoleucine catabolism [goid GO:0006550] [evidence IMP] [pmid 1479341]; go_process: leucine catabolism [goid GO:0006552] [evidence IMP] [pmid 1479341]; go_process: valine catabolism [goid GO:0006574] [evidence IMP] [pmid 1479341] --- --- --- ec // 2AMD_PSEPS // (P81593) 2-aminomuconate deaminase (EC 3.5.99.5) (Fragment) // 7.7 --- --- S0001876 // LPD1 SGDID:S0001876, Chr VI from 103121-101622, reverse complement, Verified ORF // sgd // 11 // --- /// J03645 // S.cerevisiae dihydrolipoamide dehydrogenase mRNA, complete cds. // gb // 11 // --- /// GENEFINDER00000018565 // cdna:GeneFinder chromosome:SGD1:VI:101622:102866:-1 // ensembl // 11 // --- /// GENSCAN00000023227 // cdna:Genscan chromosome:SGD1:VI:101622:103121:-1 // ensembl // 11 // --- /// YFL018C // cdna:known chromosome:SGD1:VI:101622:103121:-1 gene:YFL018C // ensembl // 11 // --- --- No cerevisiae_gene -1.13838279917439 1.77123753375865 -1.08815310977677 1.32868734651462 -1.06385304284631 Max fold change below threshold 4 1.77123753375865 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776152_at YDR475C.S1 Protein of unknown function; previously annotated as two separate ORFs, YDR474C and YDR475C, which were merged as a result of corrections to the systematic reference sequence 1.77100557866371 2207.72155761719 1427.68395996094 --- --- --- --- 1309.98815917969 2095.44677734375 2319.99633789063 1545.37976074219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR475C /GEN=PRP3 /DB_XREF=GI:37362637 /SEG=NC_001136:-1407452,1410082 /DEF=Jumonji Interacting Protein /NOTE=Ydr475cp --- --- --- --- --- --- S0002883 // JIP4 SGDID:S0002883, Chr IV from 1410084-1407454, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023827 // cdna:GeneFinder chromosome:SGD1:IV:1407454:1410084:-1 // ensembl // 11 // --- /// GENSCAN00000025471 // cdna:Genscan chromosome:SGD1:IV:1407454:1410084:-1 // ensembl // 11 // --- /// YDR475C // cdna:known chromosome:SGD1:IV:1407454:1410084:-1 gene:YDR475C // ensembl // 11 // --- --- No cerevisiae_gene -1.0252373663893 1.59959215101296 1.11993507291624 1.77100557866371 1.1796898696473 Max fold change below threshold 4 1.77100557866371 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779266_at YDL204W.S1 Protein of unknown function; has similarity to mammalian reticulon proteins; member of the RTNLA (reticulon-like A) subfamily 1.77067295517175 5851.94360351563 6536.4130859375 RTN2 --- 5783 // endoplasmic reticulum // inferred from direct assay --- 7671.396484375 6366.01318359375 5337.8740234375 5401.4296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL204W /GEN=RTN2 /DB_XREF=GI:6319997 /SEG=NC_001136:+94606,95787 /DEF=reticulon gene member of the RTNLA (reticulon-like A) subfamily /NOTE=Rtn2p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- AAP47372.1 // span:59-81,152-174 // numtm:2 /// S0002363 // span:59-81,152-174 // numtm:2 S0002363 // RTN2 SGDID:S0002363, Chr IV from 94606-95787, Verified ORF // sgd // 11 // --- /// AY164797 // Saccharomyces cerevisiae Rtn2p (Rtn2) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000024951 // cdna:Genscan chromosome:SGD1:IV:94606:95787:1 // ensembl // 11 // --- /// GENEFINDER00000023780 // cdna:GeneFinder chromosome:SGD1:IV:95089:95787:1 // ensembl // 11 // --- /// YDL204W // cdna:known chromosome:SGD1:IV:94606:95787:1 gene:YDL204W // ensembl // 11 // --- --- No cerevisiae_gene -1.77067295517175 -1.2050550734242 -1.20285944998363 -1.43716326962598 -1.42025295675479 Max fold change below threshold 4 1.77067295517175 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776555_at YBR120C.S1 Translational activator of COB mRNA 1.77039108318606 806.810363769531 510.279251098633 CBP6 6412 // protein biosynthesis // traceable author statement 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay --- 465.180145263672 816.873901367188 796.746826171875 555.378356933594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR120C /GEN=CBP6 /DB_XREF=GI:6319596 /SEG=NC_001134:-480391,480879 /DEF=Translational activator of COB mRNA /NOTE=Cbp6p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 8811190]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 8811190]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 8811190] --- --- --- --- --- --- S0000324 // CBP6 SGDID:S0000324, Chr II from 480917-480429, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000021236 // cdna:Genscan chromosome:SGD1:II:480429:480917:-1 // ensembl // 10 // --- /// YBR120C // cdna:known chromosome:SGD1:II:480429:480917:-1 gene:YBR120C // ensembl // 10 // --- --- No cerevisiae_gene -1.32421523230069 1.75603776232575 1.77039108318606 1.712770491785 1.19389953029658 Max fold change below threshold 4 1.77039108318606 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772202_at YKL148C.S1 Flavoprotein subunit of succinate dehydrogenase (Sdh1p, Sdh2p, Sdh3p, Sdh4p), which couples the oxidation of succinate to the transfer of electrons to ubiquinone 1.77035741564356 5124.05737304688 3024.44702148438 SDH1 6099 // tricarboxylic acid cycle // traceable author statement /// 6121 // mitochondrial electron transport, succinate to ubiquinone // traceable author statement 5749 // respiratory chain complex II (sensu Eukaryota) // traceable author statement 8177 // succinate dehydrogenase (ubiquinone) activity // traceable author statement 3253.60180664063 5760.0380859375 4488.07666015625 2795.29223632813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL148C /GEN=SDH1 /DB_XREF=GI:6322701 /SEG=NC_001143:-169212,171134 /DEF=Yeast succinate dehydrogenase (SDH) is a tetramer of non-equivalent subunits--Sdh1p, Sdh2p, Sdh3p, Sdh4p--that couples the oxidation of succinate to the transfer of electrons to ubiquinone. /NOTE=Sdh1p; go_component: respiratory chain complex II (sensu Eukarya) [goid GO:0005749] [evidence TAS] [pmid 9929002]; go_function: succinate dehydrogenase (ubiquinone) activity [goid GO:0008177] [evidence TAS] [pmid 9929002]; go_process: mitochondrial electron transport, succinate to ubiquinone [goid GO:0006121] [evidence TAS] [pmid 9929002]; go_process: tricarboxylic acid cycle [goid GO:0006099] [evidence TAS] [pmid 9175438] --- --- --- --- --- --- S0001631 // SDH1 SGDID:S0001631, Chr XI from 171134-169212, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018308 // cdna:Genscan chromosome:SGD1:XI:169212:171134:-1 // ensembl // 11 // --- /// GENEFINDER00000023072 // cdna:GeneFinder chromosome:SGD1:XI:169212:171134:-1 // ensembl // 11 // --- /// YKL148C // cdna:known chromosome:SGD1:XI:169212:171134:-1 gene:YKL148C // ensembl // 11 // --- --- No cerevisiae_gene -1.28938559690797 1.77035741564356 1.01803380013121 1.37941792723254 -1.16395765865058 Max fold change below threshold 4 1.77035741564356 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778391_at YGR224W.S1 Plasma membrane transporter of the major facilitator superfamily, involved in resistance to azole drugs such as ketoconazole and fluconazole 1.77034591624627 16.1532421112061 11.4619541168213 AZR1 45117 // azole transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay 45118 // azole transporter activity // inferred from mutant phenotype 12.6126947402954 19.6593761444092 12.6471080780029 10.3112134933472 0.219482004642487 0.129638999700546 0.274170011281967 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR224W /GEN=AZR1 /DB_XREF=GI:6321663 /SEG=NC_001139:+942807,944648 /DEF=Plasma membrane transporter of the major facilitator superfamily, involved in resistance to azole drugs such as ketoconazole and fluconazole /NOTE=Azr1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 11113970]; go_function: azole transporter activity [goid GO:0045118] [evidence IMP] [pmid 11113970]; go_process: azole transport [goid GO:0045117] [evidence IMP] [pmid 11113970] --- --- --- --- --- S0003456 // span:69-91,104-126,136-153,158-180,190-212,224-246,294-316,329-351,378-400,413-435,445-467,474-496,585-604 // numtm:13 S0003456 // AZR1 SGDID:S0003456, Chr VII from 942809-944650, Verified ORF // sgd // 11 // --- /// GENSCAN00000019515 // cdna:Genscan chromosome:SGD1:VII:942809:944650:1 // ensembl // 11 // --- /// GENEFINDER00000021755 // cdna:GeneFinder chromosome:SGD1:VII:942809:944650:1 // ensembl // 11 // --- /// YGR224W // cdna:known chromosome:SGD1:VII:942809:944650:1 gene:YGR224W // ensembl // 11 // --- --- No cerevisiae_gene 1.16813935399458 1.558697530481 1.77034591624627 1.00272846829453 -1.22320178400274 Max fold change below threshold 4 1.77034591624627 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776689_at YER087W.S1 Hypothetical protein 1.77029009275389 264.408378601074 361.898574829102 --- --- --- 4827 // proline-tRNA ligase activity // inferred from sequence similarity 336.996826171875 211.102188110352 317.714569091797 386.800323486328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER087W /GEN=ILV1 /DB_XREF=GI:6320931 /SEG=NC_001137:+330572,332302 /DEF=Hypothetical ORF /NOTE=Yer087wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: proline-tRNA ligase activity [goid GO:0004827] [evidence ISS] [pmid 10592175]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 1.89999997615814 --- S0000889 // YER087W SGDID:S0000889, Chr V from 330572-332302, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016874 // cdna:Genscan chromosome:SGD1:V:330572:332302:1 // ensembl // 11 // --- /// YER087W // cdna:known chromosome:SGD1:V:330572:332302:1 gene:YER087W // ensembl // 11 // --- YER087C-A // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene -1.77029009275389 -1.59636822900061 1.54631851306092 -1.06069050322495 1.14778625033416 Max fold change below threshold 4 1.77029009275389 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772552_at YDL064W.S1 SUMO-conjugating enzyme involved in the Smt3p conjugation pathway; nuclear protein required for S- and M-phase cyclin degradation and mitotic control; involved in proteolysis mediated by the anaphase-promoting complex cyclosome (APCC) 1.76987824934857 632.984466552734 1077.40762329102 UBC9 22 // mitotic spindle elongation // inferred from mutant phenotype /// 86 // G2/M transition of mitotic cell cycle // traceable author statement /// 6464 // protein modification // inferred from direct assay 5634 // nucleus // traceable author statement 8640 // ubiquitin-like conjugating enzyme activity // inferred from direct assay 1006.44854736328 568.654113769531 697.314819335938 1148.36669921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL064W /GEN=UBC9 /DB_XREF=GI:6320139 /SEG=NC_001136:+337487,338070 /DEF=SUMO-conjugating enzyme involved in the Smt3p conjugation pathway; nuclear protein required for S- and M-phase cyclin degradation and mitotic control; involved in proteolysis mediated by the anaphase-promoting complex cyclosome (APCC) /NOTE=Ubc9p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 7800043]; go_function: ubiquitin-like conjugating enzyme activity [goid GO:0008640] [evidence IDA] [pmid 9341106]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence TAS] [pmid 8982460]; go_process: mitotic spindle elongation [goid GO:0000022] [evidence IMP] [pmid 7800043]; go_process: protein modification [goid GO:0006464] [evidence IDA] [pmid 9341106] --- --- --- --- --- --- S0002222 // UBC9 SGDID:S0002222, Chr IV from 337487-337524,337635-338070, intron sequence removed, Verified ORF // sgd // 11 // --- /// YDL064W // cdna:known chromosome:SGD1:IV:337487:338070:1 gene:YDL064W // ensembl // 11 // --- --- No cerevisiae_gene -1.33229233516656 -1.76987824934857 -1.06930333843009 -1.44332017541479 1.14100884961012 Max fold change below threshold 4 1.76987824934857 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771507_at YNL152W.S1 Protein required for cell viability 1.76985026408682 307.251937866211 543.307723999023 --- --- 5737 // cytoplasm // inferred from direct assay 5543 // phospholipid binding // inferred from sequence similarity 502.428558349609 283.881958007813 330.621917724609 584.186889648438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL152W /GEN=GIM3 /DB_XREF=GI:6324177 /SEG=NC_001146:+346313,347542 /DEF=Protein required for cell viability /NOTE=Ynl152wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: phospholipid binding [goid GO:0005543] [evidence ISS] [pmid 14690591]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005096 // YNL152W SGDID:S0005096, Chr XIV from 346313-347542, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019916 // cdna:Genscan chromosome:SGD1:XIV:346313:347542:1 // ensembl // 11 // --- /// GENEFINDER00000020462 // cdna:GeneFinder chromosome:SGD1:XIV:346439:347542:1 // ensembl // 11 // --- /// YNL152W // cdna:known chromosome:SGD1:XIV:346313:347542:1 gene:YNL152W // ensembl // 11 // --- --- No cerevisiae_gene 1.14237687929216 -1.76985026408682 -1.09815915563916 -1.5196468576778 1.16272628205568 Max fold change below threshold 4 1.76985026408682 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771896_at YPL092W.S1 Plasma membrane sulfite pump involved in sulfite metabolism and required for efficient sulfite efflux; major facilitator superfamily protein 1.7698455370141 644.012268066406 1081.18218994141 SSU1 316 // sulfite transport // inferred from direct assay 5886 // plasma membrane // inferred from direct assay 319 // sulfite transporter activity // inferred from direct assay 1018.42004394531 575.428771972656 712.595764160156 1143.9443359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL092W /GEN=SSU1 /DB_XREF=GI:6325165 /SEG=NC_001148:+373788,375164 /DEF=putative sulfite pump /NOTE=Ssu1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 9294463]; go_function: sulfite transporter activity [goid GO:0000319] [evidence IDA] [pmid 10870099]; go_process: sulfite transport [goid GO:0000316] [evidence IDA] [pmid 10870099] --- --- --- --- --- S0006013 // span:15-37,49-71,91-110,130-152,184-206,213-235,250-272,306-328,384-406 // numtm:9 S0006013 // SSU1 SGDID:S0006013, Chr XVI from 373790-375166, Verified ORF // sgd // 11 // --- /// GENSCAN00000017119 // cdna:Genscan chromosome:SGD1:XVI:373790:375166:1 // ensembl // 11 // --- /// YPL092W // cdna:known chromosome:SGD1:XVI:373790:375166:1 gene:YPL092W // ensembl // 11 // --- --- No cerevisiae_gene 1.41103144387375 -1.7698455370141 -1.06042346664884 -1.42916937647755 1.12325394883816 Max fold change below threshold 4 1.7698455370141 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779400_at YIL165C.S1 Nitrilase, member of the widely found nitrilase branch (EC:3.5.5.1) of the nitrilase superfamily /// Hypothetical protein 1.76943666799854 1758.96276855469 1557.34698486328 NIT1 --- --- 257 // nitrilase activity // inferred from sequence similarity 1419.09240722656 1451.52368164063 2066.40185546875 1695.6015625 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL165C /GEN=VTH1 /DB_XREF=GI:6322026 /SEG=NC_001141:-33718,34077 /DEF=Hypothetical ORF /NOTE=Yil165cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001427 // YIL165C SGDID:S0001427, Chr IX from 34077-33718, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// X66132 // S.cerevisiae orf-1 and orf-2 mRNA. // gb // 10 // --- /// GENSCAN00000016350 // cdna:Genscan chromosome:SGD1:IX:33718:34005:-1 // ensembl // 9 // --- /// GENEFINDER00000019126 // cdna:GeneFinder chromosome:SGD1:IX:33718:34005:-1 // ensembl // 9 // --- /// YIL165C // cdna:known chromosome:SGD1:IX:33718:34077:-1 gene:YIL165C // ensembl // 11 // --- --- No cerevisiae_gene 1.76943666799854 1.02285353247534 1.04362503714988 1.45614326801119 1.19484929513071 Max fold change below threshold 4 1.76943666799854 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sp-GPD3-3_s_at AFFX-r2-Sp-GPD3-3 --- 1.76934975034569 --- --- --- --- 140.108871459961 164.965423583984 158.016906738281 138.953964233398 0.00195312988944352 0.00122069998178631 0.00292969006113708 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=GPD3 glyceraldehyde 3-phosphate dehydrogenase (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- X85332 // S.pombe mRNA for glyceraldehyde-3-phosphate dehydrogenase. // gb // 11 // --- /// SPBC354.12 // |gpd3||glyceraldehyde 3-phosphate dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPBC32F12.11 // |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- AFFX_control No -1.15582923282132 1.1774088383199 -1.76934975034569 1.12781514183731 -1.00831143776958 Max fold change below threshold 4 1.76934975034569 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770975_at SPAC56E4.06c.S1 --- 1.76866158431619 --- --- --- --- 8.17416286468506 14.4573278427124 11.3098278045654 6.10844755172729 0.274170011281967 0.194580003619194 0.219482004642487 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC56E4.06c /DEF=gamma-glutamyltranspeptidase (predicted) --- --- --- --- --- --- SPAC56E4.06c // |||protein-glutamine gamma-glutamyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.10067398720207 1.76866158431619 1.34040827974418 1.38360685880476 -1.33817353680538 Max fold change below threshold 4 1.76866158431619 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778934_at YGL020C.S1 Protein required for normal mitochondrial morphology and inheritance 1.7686127501479 531.430847167969 893.775268554688 MDM39 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay --- 906.29345703125 512.431823730469 550.429870605469 881.257080078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL020C /GEN=MDM39 /DB_XREF=GI:6321418 /SEG=NC_001139:-457166,457873 /DEF=Spore Wall Formation. Mitochondrial Distribution and Morphology /NOTE=Mdm39p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence IMP] [pmid 11907266] --- --- --- --- --- --- S0002988 // MDM39 SGDID:S0002988, Chr VII from 457875-457168, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019325 // cdna:Genscan chromosome:SGD1:VII:457168:457875:-1 // ensembl // 11 // --- /// YGL020C // cdna:known chromosome:SGD1:VII:457168:457875:-1 gene:YGL020C // ensembl // 11 // --- --- No cerevisiae_gene -1.15919021705358 -1.7686127501479 -1.07839719862575 -1.64651939407709 -1.02840984488988 Max fold change below threshold 4 1.7686127501479 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776814_at YDL135C.S1 Rho GDP dissociation inhibitor involved in the localization and regulation of Cdc42p 1.76805430783177 1406.97052001953 892.040374755859 RDI1 7015 // actin filament organization // inferred from direct assay /// 7015 // actin filament organization // inferred from mutant phenotype /// 7264 // small GTPase mediated signal transduction // inferred from physical interaction 5829 // cytosol // inferred from direct assay 4871 // signal transducer activity // inferred from physical interaction /// 5094 // Rho GDP-dissociation inhibitor activity // inferred from direct assay 826.496887207031 1352.64965820313 1461.29138183594 957.583862304688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL135C /GEN=RDI1 /DB_XREF=GI:6320066 /SEG=NC_001136:-218680,219288 /DEF=Rho GDP dissociation inhibitor with activity toward Rho1p /NOTE=Rdi1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 10066831]; go_function: Rho GDP-dissociation inhibitor activity [goid GO:0005094] [evidence IDA] [pmid 10066831]; go_function: signal transducer activity [goid GO:0004871] [evidence IPI] [pmid 10066831]; go_process: actin filament organization [goid GO:0007015] [evidence IDA,IMP] [pmid 9242378]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence IPI] [pmid 10066831] --- --- --- --- --- --- S0002294 // RDI1 SGDID:S0002294, Chr IV from 219288-218680, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024998 // cdna:Genscan chromosome:SGD1:IV:218680:219288:-1 // ensembl // 11 // --- /// YDL135C // cdna:known chromosome:SGD1:IV:218680:219288:-1 gene:YDL135C // ensembl // 11 // --- --- No cerevisiae_gene 1.51942693938739 1.6366058712866 1.26565133027972 1.76805430783177 1.15860552789332 Max fold change below threshold 4 1.76805430783177 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773815_at YGR076C.S1 Mitochondrial ribosomal protein of the large subunit 1.7679982537282 564.139343261719 635.713256835938 MRPL25 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement /// 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // traceable author statement 593.899169921875 594.0849609375 534.193725585938 677.52734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR076C /GEN=MRPL25 /DB_XREF=GI:6321513 /SEG=NC_001139:-637106,637579 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl25p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0003308 // MRPL25 SGDID:S0003308, Chr VII from 637581-637108, reverse complement, Verified ORF // sgd // 11 // --- /// YGR076C // cdna:known chromosome:SGD1:VII:637108:637581:-1 gene:YGR076C // ensembl // 11 // --- GENEFINDER00000021583 // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene 1.18834525947634 1.00031283259017 1.7679982537282 -1.1117674009938 1.14081207394031 Max fold change below threshold 4 1.7679982537282 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770859_at YGR287C.S1 Hypothetical protein 1.76767017775175 3173.455078125 2060.67559814453 --- --- 5739 // mitochondrion // inferred from direct assay 4553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from sequence similarity 2139.77709960938 3782.42016601563 2564.48999023438 1981.57409667969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR287C /GEN=BIO2 /DB_XREF=GI:6321726 /SEG=NC_001139:-1067227,1068996 /DEF=Hypothetical ORF /NOTE=Ygr287cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND] [pmid 10559272]; go_function: hydrolase activity, hydrolyzing O-glycosyl compounds [goid GO:0004553] [evidence ISS] [pmid 10592175]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003519 // YGR287C SGDID:S0003519, Chr VII from 1068997-1067228, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// AB109221 // Saccharomyces cerevisiae im mRNA for oligo-1,6-glucosidase, complete cds. // gb // 11 // --- /// GENSCAN00000019563 // cdna:Genscan chromosome:SGD1:VII:1067228:1068997:-1 // ensembl // 11 // --- /// GENEFINDER00000021678 // cdna:GeneFinder chromosome:SGD1:VII:1067228:1068997:-1 // ensembl // 11 // --- /// YGR287C // cdna:known chromosome:SGD1:VII:1067228:1068997:-1 gene:YGR287C // ensembl // 11 // --- --- No cerevisiae_gene -1.32694744209697 1.76767017775175 -1.11747088856735 1.19848464155567 -1.07983703622023 Max fold change below threshold 4 1.76767017775175 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778645_at YDR128W.S1 Hypothetical protein 1.76697552537983 541.713439941406 688.468231201172 --- --- 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay --- 673.442321777344 485.488830566406 597.938049316406 703.494140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR128W /GEN=ARO1 /DB_XREF=GI:6320333 /SEG=NC_001136:+709543,712989 /DEF=Hypothetical ORF /NOTE=Ydr128wp; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002535 // YDR128W SGDID:S0002535, Chr IV from 709544-712990, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025192 // cdna:Genscan chromosome:SGD1:IV:709544:712990:1 // ensembl // 11 // --- /// GENEFINDER00000023673 // cdna:GeneFinder chromosome:SGD1:IV:709973:712990:1 // ensembl // 11 // --- /// YDR128W // cdna:known chromosome:SGD1:IV:709544:712990:1 gene:YDR128W // ensembl // 11 // --- --- No cerevisiae_gene -1.76697552537983 -1.38714277111516 1.36026850155782 -1.12627440676715 1.04462419107897 Max fold change below threshold 4 1.76697552537983 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778389_at YGR196C.S1 Protein of unknown function, required for survival upon exposure to K1 killer toxin 1.76684706678869 205.034461975098 331.780532836914 FYV8 --- 5737 // cytoplasm // inferred from direct assay --- 300.723754882813 198.938385009766 211.13053894043 362.837310791016 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR196C /GEN=FYV8 /DB_XREF=GI:6321635 /SEG=NC_001139:-889736,892189 /DEF=Protein of unknown function, required for survival upon exposure to K1 killer toxin /NOTE=Fyv8p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003428 // FYV8 SGDID:S0003428, Chr VII from 892191-889738, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019494 // cdna:Genscan chromosome:SGD1:VII:889738:892191:-1 // ensembl // 11 // --- /// GENEFINDER00000021391 // cdna:GeneFinder chromosome:SGD1:VII:889738:892191:-1 // ensembl // 11 // --- /// YGR196C // cdna:known chromosome:SGD1:VII:889738:892191:-1 gene:YGR196C // ensembl // 11 // --- --- No cerevisiae_gene -1.76684706678869 -1.51164268709656 1.25367156221827 -1.42434986616342 1.20654688863009 Max fold change below threshold 4 1.76684706678869 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775252_at YBR179C.S1 Mitochondrial integral membrane protein involved in mitochondrial fusion and maintenance of the mitochondrial genome; contains N-terminal GTPase domain 1.76663116214579 418.138656616211 646.670745849609 FZO1 7005 // mitochondrion organization and biogenesis // traceable author statement /// 8053 // mitochondrial fusion // inferred from mutant phenotype /// 8053 // mitochondrial fusion // inferred from physical interaction 5741 // mitochondrial outer membrane // traceable author statement /// 5741 // mitochondrial outer membrane // inferred from direct assay /// 5743 // mitochondrial inner membrane // inferred from direct assay 3924 // GTPase activity // traceable author statement 657.506713867188 372.181091308594 464.096221923828 635.834777832031 0.00415039015933871 0.00415039015933871 0.00585938012227416 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR179C /GEN=FZO1 /DB_XREF=GI:6319656 /SEG=NC_001134:-586504,589071 /DEF=Mitochondrial integral membrane protein involved in mitochondrial fusion and maintenance of the mitochondrial genome; contains N-terminal GTPase domain /NOTE=Fzo1p; go_component: mitochondrial outer membrane [goid GO:0005741] [evidence TAS] [pmid 9891785]; go_function: GTPase activity [goid GO:0003924] [evidence TAS] [pmid 9891785]; go_process: mitochondrial fusion [goid GO:0008053] [evidence IMP,IPI] [pmid 12808034]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence TAS] [pmid 9891785] --- --- --- --- --- --- S0000383 // FZO1 SGDID:S0000383, Chr II from 589109-586542, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021284 // cdna:Genscan chromosome:SGD1:II:586542:589109:-1 // ensembl // 11 // --- /// GENEFINDER00000022167 // cdna:GeneFinder chromosome:SGD1:II:586542:589109:-1 // ensembl // 11 // --- /// YBR179C // cdna:known chromosome:SGD1:II:586542:589109:-1 gene:YBR179C // ensembl // 11 // --- --- No cerevisiae_gene -1.55110128711174 -1.76663116214579 -1.24674197708421 -1.4167465340304 -1.03408422563649 Max fold change below threshold 4 1.76663116214579 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1769726_at YDR515W.S1 RNA binding protein that associates with polysomes; proposed to be involved in regulating mRNA translation; involved in the copper-dependent mineralization of copper sulfide complexes on cell surface in cells cultured in copper salts 1.76649811253463 24.8865222930908 36.7185659408569 SLF1 6445 // regulation of translation // inferred from genetic interaction /// 6445 // regulation of translation // inferred from mutant phenotype /// 6445 // regulation of translation // inferred from physical interaction /// 6878 // copper ion homeostasis // inferred from mutant phenotype /// 6878 // copper ion homeostasis // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay /// 5844 // polysome // inferred from direct assay 3723 // RNA binding // inferred from direct assay 30.8359394073486 17.4559707641602 32.3170738220215 42.6011924743652 0.000732421991415322 0.0805663987994194 0.00805663969367743 0.000732421991415322 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR515W /GEN=SLF1 /DB_XREF=GI:6320723 /SEG=NC_001136:+1473417,1474760 /DEF=Associates with translating ribosomes; may function in cytoplasm to modulate mRNA translation; regulates the copper-dependent mineralization of copper sulfide complexes on cell surface in cells cultured in medium containing copper salts /NOTE=Slf1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: polysome [goid GO:0005844] [evidence IDA] [pmid 10564276]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 10564276]; go_process: copper ion homeostasis [goid GO:0006878] [evidence IMP,IPI] [pmid 8628314]; go_process: regulation of translation [goid GO:0006445] [evidence IGI,IMP,IPI] [pmid 10564276] --- --- --- --- --- --- S0002923 // SLF1 SGDID:S0002923, Chr IV from 1473419-1474762, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023486 // cdna:GeneFinder chromosome:SGD1:IV:1473419:1474839:1 // ensembl // 11 // --- /// GENSCAN00000025501 // cdna:Genscan chromosome:SGD1:IV:1473419:1474762:1 // ensembl // 11 // --- /// YDR515W // cdna:known chromosome:SGD1:IV:1473419:1474762:1 gene:YDR515W // ensembl // 11 // --- --- No cerevisiae_gene -1.0912283117459 -1.76649811253463 -1.01267780211091 1.04803273203734 1.3815435265842 Max fold change below threshold 4 1.76649811253463 Max fold change below threshold PPAPPP No 2 0 PAPP 1 3 0 No No 2 < x = 3
1776132_at YPR188C.S1 Regulatory light chain for the type II myosin, Myo1p; binds to an IQ motif of Myo1p, localization to the bud neck depends on Myo1p; involved in the disassembly of the Myo1p ring 1.76648514323675 346.94677734375 542.466735839844 MLC2 916 // cytokinesis, contractile ring contraction // inferred from mutant phenotype 142 // contractile ring (sensu Saccharomyces) // inferred from direct assay 45159 // myosin II binding // inferred from physical interaction 525.852783203125 297.68310546875 396.21044921875 559.080688476563 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR188C /GEN=RPO26 /DB_XREF=GI:6325446 /SEG=NC_001148:-911982,912473 /DEF=Mlc2p is likely the regulatory light chain for the type II myosin, Myo1p. Mlc2p binds to an IQ motif of Myo1p. Mlc2p localization to the bud neck depends on Myo1p. /NOTE=Ypr188cp --- --- --- --- --- --- S0006392 // MLC2 SGDID:S0006392, Chr XVI from 912475-911984, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017329 // cdna:Genscan chromosome:SGD1:XVI:911984:912475:-1 // ensembl // 11 // --- /// GENEFINDER00000020876 // cdna:GeneFinder chromosome:SGD1:XVI:911984:912475:-1 // ensembl // 11 // --- /// YPR188C // cdna:known chromosome:SGD1:XVI:911984:912475:-1 gene:YPR188C // ensembl // 11 // --- --- No cerevisiae_gene -1.06195671547193 -1.76648514323675 1.06675308383471 -1.32720574189804 1.06318860779064 Max fold change below threshold 4 1.76648514323675 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774685_at YER045C.S1 Basic leucine zipper (bZIP) transcription factor of the ATF/CREB family, may regulate transcription of genes involved in utilization of non-optimal carbon sources 1.76604547748358 440.630249023438 362.7998046875 ACA1 6367 // transcription initiation from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from physical interaction 3704 // specific RNA polymerase II transcription factor activity // inferred from direct assay 327.588226318359 406.749450683594 474.511047363281 398.011383056641 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER045C /GEN=ACA1 /DB_XREF=GI:6320885 /SEG=NC_001137:-240031,241500 /DEF=Basic leucine zipper (bZIP) transcription factor of the ATF/CREB family, may regulate transcription of genes involved in utilization of non-optimal carbon sources /NOTE=Aca1p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 10825197]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IDA] [pmid 10825197]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence IDA] [pmid 10825197] --- --- --- --- --- --- S0000847 // ACA1 SGDID:S0000847, Chr V from 241500-240031, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000019594 // cdna:GeneFinder chromosome:SGD1:V:240031:241296:-1 // ensembl // 10 // --- /// YER045C // cdna:known chromosome:SGD1:V:240031:241500:-1 gene:YER045C // ensembl // 10 // --- --- No cerevisiae_gene 1.76604547748358 1.24164856367061 1.2649562234947 1.44849847839812 1.21497462692643 Max fold change below threshold 4 1.76604547748358 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779425_at YAL039C.S1 Cytochrome c heme lyase (holocytochrome c synthase), attaches heme to apo-Cyc1p in the mitochondrial intermembrane space; human ortholog may have a role in microphthalmia with linear skin defects (MLS) 1.76548389414017 2992.54772949219 1786.10174560547 CYC3 18063 // cytochrome c-heme linkage // inferred from direct assay 5758 // mitochondrial intermembrane space // inferred from direct assay 4408 // holocytochrome-c synthase activity // inferred from direct assay 1779.19445800781 2843.95629882813 3141.13916015625 1793.00903320313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL039C /GEN=CYC3 /DB_XREF=GI:6319278 /SEG=NC_001133:-68719,69528 /DEF=Cytochrome c heme lyase (holocytochrome c synthase), attaches heme to apo-Cyc1p in the mitochondrial intermembrane space; human ortholog may have a role in microphthalmia with linear skin defects (MLS) /NOTE=Cyc3p; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence IDA] [pmid 1656231]; go_function: holocytochrome-c synthase activity [goid GO:0004408] [evidence IDA] [pmid 3034577]; go_process: cytochrome c-heme linkage [goid GO:0018063] [evidence IDA] [pmid 3034577] --- --- --- --- --- --- S0000037 // CYC3 SGDID:S0000037, Chr I from 69526-68717, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018203 // cdna:GeneFinder chromosome:SGD1:I:68717:69526:-1 // ensembl // 11 // --- /// GENSCAN00000020343 // cdna:Genscan chromosome:SGD1:I:68717:69526:-1 // ensembl // 11 // --- /// YAL039C // cdna:known chromosome:SGD1:I:68717:69526:-1 gene:YAL039C // ensembl // 11 // --- --- No cerevisiae_gene -1.09398466697035 1.59845163974518 1.20157602375713 1.76548389414017 1.00776451114331 Max fold change below threshold 4 1.76548389414017 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770287_at SPAC4F8.14c.S1 --- 1.76548182685008 --- --- --- --- 11.7380752563477 13.9679861068726 17.4642028808594 6.64865255355835 0.358154296875 0.45751953125 0.24609400331974 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4F8.14c /GEN=hcs1 /DEF=3-hydroxy-3-methylglutaryl CoA synthase (PMID 8750242) --- --- --- --- --- --- SPAC4F8.14c // |hcs1|hcs|3-hydroxy-3-methylglutaryl CoA synthase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.27637128417017 1.18997244452995 -1.73126487158455 1.48782509052455 -1.76548182685008 Max fold change below threshold 4 1.76548182685008 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775953_s_at YNL034W.S1 Hypothetical protein /// Hypothetical protein 1.76529640839065 34.7479133605957 52.3506965637207 --- --- --- --- 57.9412498474121 36.4433364868164 33.052490234375 46.7601432800293 0.00415039015933871 0.030273400247097 0.00292969006113708 0.00585938012227416 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL034W /GEN=NCE103 /DB_XREF=GI:6324294 /SEG=NC_001146:+570475,572313 /DEF=Hypothetical ORF /NOTE=Ynl034wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 5.80000019073486 --- S0004963 // YNL018C SGDID:S0004963, Chr XIV from 601773-599935, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0004979 // YNL034W SGDID:S0004979, Chr XIV from 570476-572314, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020010 // cdna:Genscan chromosome:SGD1:XIV:570476:572314:1 // ensembl // 11 // --- /// GENEFINDER00000020679 // cdna:GeneFinder chromosome:SGD1:XIV:570476:572314:1 // ensembl // 11 // --- /// GENSCAN00000020023 // cdna:Genscan chromosome:SGD1:XIV:599935:601773:-1 // ensembl // 11 // --- /// GENEFINDER00000020433 // cdna:GeneFinder chromosome:SGD1:XIV:599935:601773:-1 // ensembl // 11 // --- /// YNL034W // cdna:known chromosome:SGD1:XIV:570476:572314:1 gene:YNL034W // ensembl // 11 // --- /// YNL018C // cdna:known chromosome:SGD1:XIV:599935:601773:-1 gene:YNL018C // ensembl // 11 // --- --- No cerevisiae_gene -1.76529640839065 -1.58989970274463 1.14271762414666 -1.75300709376362 -1.23911617422606 Max fold change below threshold 4 1.76529640839065 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1777366_at YIL045W.S1 Protein that interacts with glycogen synthase, Gsy2p 1.76524252982906 3460.07556152344 2063.57165527344 PIG2 --- 5737 // cytoplasm // inferred from direct assay 19888 // protein phosphatase regulator activity // inferred from sequence similarity 2040.57836914063 3602.11572265625 3318.03540039063 2086.56494140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL045W /GEN=PIG2 /DB_XREF=GI:6322144 /SEG=NC_001141:+271160,272776 /DEF=Interacts with Gsy2p /NOTE=Pig2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein phosphatase regulator activity [goid GO:0019888] [evidence ISS] [pmid 9046081]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001307 // PIG2 SGDID:S0001307, Chr IX from 271160-272776, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019095 // cdna:GeneFinder chromosome:SGD1:IX:271160:272776:1 // ensembl // 11 // --- /// GENSCAN00000016442 // cdna:Genscan chromosome:SGD1:IX:271193:272776:1 // ensembl // 11 // --- /// YIL045W // cdna:known chromosome:SGD1:IX:271160:272776:1 gene:YIL045W // ensembl // 11 // --- --- No cerevisiae_gene -1.32062507075588 1.76524252982906 1.00340814641031 1.62602693950343 1.02253604809356 Max fold change below threshold 4 1.76524252982906 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775914_at SPBC17A3.08.S1 --- 1.76517033834018 --- --- --- --- 1.0879213809967 1.17985939979553 1.00839877128601 0.616326570510864 0.633789002895355 0.753906011581421 0.633789002895355 0.725830018520355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC17A3.08 /DEF=hypothetical protein --- --- --- --- --- --- SPBC17A3.08 // |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.06946064636704 1.08450796206854 -1.26717901942796 -1.0788602802533 -1.76517033834018 Max fold change below threshold 0 1.76517033834018 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771612_at YPL138C.S1 Subunit of COMPASS (Set1C), a complex which methylates Rad6p ubiquitinated histone H3 on lysine 4 and is required in telomeric transcriptional silencing; PHD finger domain protein similar to human CGBP, an unmethylated CpG binding protein 1.76513939343843 514.424652099609 936.630615234375 SPP1 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 6355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 16571 // histone methylation // inferred from direct assay /// 16571 // histone methylation // inferred from mutant phenotype 48188 // COMPASS complex // inferred from physical interaction 42800 // histone lysine N-methyltransferase activity (H3-K4 specific) // inferred from mutant phenotype /// 42800 // histone lysine N-methyltransferase activity (H3-K4 specific) // inferred from direct assay 886.290344238281 512.868286132813 515.981018066406 986.970886230469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL138C /GEN=SPP1 /DB_XREF=GI:6325119 /SEG=NC_001148:-291365,292426 /DEF=Subunit of the COMPASS complex, which methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres; similar to S. pombe SPCC594.05c and to human CGBP; contains PHD finger domain /NOTE=Spp1p; go_component: COMPASS complex [goid GO:0048188] [evidence IPI] [pmid 11805083]; go_component: nuclear chromatin [goid GO:0000790] [evidence IMP] [pmid 11687631]; go_function: chromatin binding [goid GO:0003682] [evidence IMP] [pmid 11687631]; go_function: histone lysine N-methyltransferase activity (H3-K4 specific) [goid GO:0042800] [evidence IDA] [pmid 11742990]; go_function: transcriptional activator activity [goid GO:0016563] [evidence IMP] [pmid 11687631]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 11687631]; go_process: histone methylation [goid GO:0016571] [evidence IDA] [pmid 11742990]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence IMP] [pmid 11687631] --- --- --- --- --- --- S0006059 // SPP1 SGDID:S0006059, Chr XVI from 292426-291365, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017083 // cdna:Genscan chromosome:SGD1:XVI:291365:292321:-1 // ensembl // 11 // --- /// YPL138C // cdna:known chromosome:SGD1:XVI:291365:292426:-1 gene:YPL138C // ensembl // 11 // --- --- No cerevisiae_gene -1.76513939343843 -1.72810518451275 1.11399932277303 -1.71768013397 1.1135976970151 Max fold change below threshold 4 1.76513939343843 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779093_at YKL175W.S1 Vacuolar membrane zinc transporter, transports zinc from storage in the vacuole to the cytoplasm when needed; transcription is induced under conditions of zinc deficiency 1.76484283541961 1694.37408447266 2743.91162109375 ZRT3 6829 // zinc ion transport // inferred from mutant phenotype /// 6829 // zinc ion transport // inferred from sequence similarity /// 6882 // zinc ion homeostasis // inferred from mutant phenotype 5774 // vacuolar membrane // inferred from direct assay 5385 // zinc ion transporter activity // inferred from mutant phenotype /// 5385 // zinc ion transporter activity // inferred from sequence similarity 2757.845703125 1562.65795898438 1826.09020996094 2729.9775390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL175W /GEN=ZRT3 /DB_XREF=GI:6322673 /SEG=NC_001143:+118798,120309 /DEF=Vacuolar membrane zinc transporter, transports zinc from storage in the vacuole to the cytoplasm when needed; transcription is induced under conditions of zinc deficiency /NOTE=Zrt3p; go_component: vacuolar membrane [goid GO:0005774] [evidence IDA] [pmid 10856230]; go_function: zinc ion transporter activity [goid GO:0005385] [evidence IMP,ISS] [pmid 10856230]; go_process: zinc ion homeostasis [goid GO:0006882] [evidence IMP] [pmid 10856230]; go_process: zinc ion transport [goid GO:0006829] [evidence IMP,ISS] [pmid 10856230] --- --- --- --- --- S0001658 // span:7-29,44-63,75-97,335-357,369-391,401-423,436-458,480-502 // numtm:8 S0001658 // ZRT3 SGDID:S0001658, Chr XI from 118798-120309, Verified ORF // sgd // 11 // --- /// GENSCAN00000018289 // cdna:Genscan chromosome:SGD1:XI:118798:120309:1 // ensembl // 11 // --- /// GENEFINDER00000022948 // cdna:GeneFinder chromosome:SGD1:XI:119314:120309:1 // ensembl // 11 // --- /// YKL175W // cdna:known chromosome:SGD1:XI:118798:120309:1 gene:YKL175W // ensembl // 11 // --- --- No cerevisiae_gene -1.42903565354222 -1.76484283541961 -1.09868250140616 -1.51024614670268 -1.01020820269169 Max fold change below threshold 4 1.76484283541961 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777306_at YDR229W.S1 Phospholipid-binding protein that interacts with both Ypt7p and Vps33p, may partially counteract the action of Vps33p and vice versa, localizes to the rim of the vacuole as cells approach stationary phase 1.76479257921513 639.291168212891 995.377716064453 IVY1 45045 // secretory pathway // inferred from genetic interaction /// 45045 // secretory pathway // inferred from physical interaction 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay 5543 // phospholipid binding // inferred from direct assay 977.861938476563 622.29931640625 656.283020019531 1012.89349365234 0.000244141003349796 0.000244140625 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR229W /GEN=IVY1 /DB_XREF=GI:6320435 /SEG=NC_001136:+924777,926138 /DEF=Phospholipid-binding protein that interacts with both Ypt7p and Vps33p, may partially counteract the action of Vps33p and vice versa, localizes to the rim of the vacuole as cells approach stationary phase /NOTE=Ivy1p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 12553664]; go_function: phospholipid binding [goid GO:0005543] [evidence IDA] [pmid 12553664]; go_process: secretory pathway [goid GO:0045045] [evidence IGI,IPI] [pmid 12553664] --- --- --- --- --- --- S0002637 // IVY1 SGDID:S0002637, Chr IV from 924779-926140, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023438 // cdna:GeneFinder chromosome:SGD1:IV:924779:926140:1 // ensembl // 11 // --- /// GENSCAN00000025277 // cdna:Genscan chromosome:SGD1:IV:924779:926140:1 // ensembl // 11 // --- /// YDR229W // cdna:known chromosome:SGD1:IV:924779:926140:1 gene:YDR229W // ensembl // 11 // --- --- No cerevisiae_gene -1.76479257921513 -1.5713691349103 1.10831487352142 -1.49000036363498 1.03582464333396 Max fold change below threshold 4 1.76479257921513 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775000_at YJL146W.S1 Protein involved in modulation of Ime2p activity during meiosis, appears to act indirectly to promote Ime2p-mediated late meiotic functions; found in growing cells and degraded during sporulation 1.76345196100903 832.265869140625 575.175933837891 IDS2 7126 // meiosis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 535.756103515625 719.751586914063 944.780151367188 614.595764160156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL146W /GEN=IDS2 /DB_XREF=GI:6322315 /SEG=NC_001142:+143210,144619 /DEF=Protein involved in modulation of Ime2p activity during meiosis, appears to act indirectly to promote Ime2p-mediated late meiotic functions; found in growing cells and degraded during sporulation /NOTE=Ids2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 7565676] --- --- --- --- --- --- S0003682 // IDS2 SGDID:S0003682, Chr X from 143210-144619, Verified ORF // sgd // 11 // --- /// GENSCAN00000024027 // cdna:Genscan chromosome:SGD1:X:143210:144619:1 // ensembl // 11 // --- /// GENEFINDER00000024375 // cdna:GeneFinder chromosome:SGD1:X:143210:144619:1 // ensembl // 11 // --- /// YJL146W // cdna:known chromosome:SGD1:X:143210:144619:1 gene:YJL146W // ensembl // 11 // --- --- No cerevisiae_gene -1.01966962428539 1.34343142745563 1.51543445599526 1.76345196100903 1.14715587956383 Max fold change below threshold 4 1.76345196100903 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770281_at YEL036C.S1 Subunit of the alpha-1,6 mannosyltransferase complex; type II membrane protein; has a role in retention of glycosyltransferases in the Golgi; involved in osmotic sensitivity and resistance to aminonitrophenyl propanediol 1.76333557004123 1601.16491699219 1261.90539550781 ANP1 6487 // N-linked glycosylation // inferred from mutant phenotype /// 6487 // N-linked glycosylation // inferred from direct assay 136 // alpha-1,6-mannosyltransferase complex // inferred from physical interaction /// 137 // Golgi cis cisterna // inferred from direct assay 9 // alpha-1,6-mannosyltransferase activity // inferred from direct assay /// 30 // mannosyltransferase activity // inferred from sequence similarity 1181.38598632813 1387.62084960938 1814.708984375 1342.4248046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL036C /GEN=ANP1 /DB_XREF=GI:6320799 /SEG=NC_001137:-83050,84552 /DEF=Mannan 8; Protein of the endoplasmic reticulum with a role in retention of glycosyltransferases in the Golgi, also involved in osmotic sensitivity and resistance to aminonitrophenyl propanediol /NOTE=Anp1p; go_component: Golgi cis cisterna [goid GO:0000137] [evidence IDA] [pmid 9430634]; go_component: mannosyltransferase complex [goid GO:0000136] [evidence IPI] [pmid 9430634]; go_function: mannosyltransferase activity [goid GO:0000030] [evidence ISS] [pmid 9434768]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IDA,IMP] [pmid 9430634] --- --- --- --- --- AAB28440.1 // span:21-43 // numtm:1 /// S0000762 // span:21-43 // numtm:1 S0000762 // ANP1 SGDID:S0000762, Chr V from 84552-83050, reverse complement, Verified ORF // sgd // 10 // --- /// S66114 // ANP1 [Saccharomyces cerevisiae, mRNA, 2001 nt]. // gb // 9 // --- /// GENSCAN00000016774 // cdna:Genscan chromosome:SGD1:V:83050:84552:-1 // ensembl // 10 // --- /// GENEFINDER00000019639 // cdna:GeneFinder chromosome:SGD1:V:83050:84552:-1 // ensembl // 10 // --- /// YEL036C // cdna:known chromosome:SGD1:V:83050:84552:-1 gene:YEL036C // ensembl // 10 // --- --- No cerevisiae_gene 1.76333557004123 1.17457026379858 -1.38957151625883 1.53608473892204 1.13631346589771 Max fold change below threshold 4 1.76333557004123 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773280_at YOR363C.S1 Autoregulatory oleate-specific transcriptional activator of peroxisome proliferation, contains Zn(2)-Cys(6) cluster domain, forms heterodimer with Oaf1p, binds oleate response elements (OREs), activates beta-oxidation genes 1.76295991905904 647.717956542969 796.275024414063 PIP2 6631 // fatty acid metabolism // inferred from mutant phenotype /// 7031 // peroxisome organization and biogenesis // inferred from mutant phenotype /// 45941 // positive regulation of transcription // inferred from mutant phenotype /// 45941 // positive regulation of transcription // inferred from physical interaction 5634 // nucleus // inferred from physical interaction 3677 // DNA binding // inferred from physical interaction /// 3677 // DNA binding // inferred from sequence similarity /// 16563 // transcriptional activator activity // inferred from mutant phenotype /// 16563 // transcriptional activator activity // inferred from physical interaction 830.074462890625 726.242248535156 569.193664550781 762.4755859375 0.000732421991415322 0.00122069998178631 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR363C /GEN=PIP2 /DB_XREF=GI:6324939 /SEG=NC_001147:-1020218,1023208 /DEF=peroxisome induction pathway 2 (PIP2); transcriptional activator of peroxisome proliferation; may form heterodimer with Oaf1 to activate oleate-inducible gene expression /NOTE=Pip2p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 8670793]; go_function: DNA binding [goid GO:0003677] [evidence IPI,ISS] [pmid 8670793]; go_function: transcriptional activator activity [goid GO:0016563] [evidence IMP,IPI] [pmid 8670793]; go_process: fatty acid metabolism [goid GO:0006631] [evidence IMP] [pmid 8670793]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence IMP] [pmid 8670793]; go_process: positive regulation of transcription [goid GO:0045941] [evidence IMP,IPI] [pmid 8670793] --- --- --- --- --- --- S0005890 // PIP2 SGDID:S0005890, Chr XV from 1023208-1020218, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017814 // cdna:Genscan chromosome:SGD1:XV:1020218:1023208:-1 // ensembl // 11 // --- /// YOR363C // cdna:known chromosome:SGD1:XV:1020218:1023208:-1 gene:YOR363C // ensembl // 11 // --- --- No cerevisiae_gene -1.76295991905904 -1.14297187276684 1.04167452209348 -1.45833398118677 -1.08865710351894 Max fold change below threshold 4 1.76295991905904 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772234_at YGR232W.S1 Regulatory, non-ATPase subunit of the 26S proteasome; homolog of the human oncoprotein gankyrin, which interacts with the retinoblastoma tumor suppressor (Rb) and cyclin-dependent kinase 4/6 1.76276637762518 1217.59936523438 1648.63165283203 NAS6 6508 // proteolysis and peptidolysis // inferred from physical interaction /// 6508 // proteolysis and peptidolysis // inferred from sequence similarity 5838 // proteasome regulatory particle (sensu Eukaryota) // inferred from direct assay --- 1609.90686035156 913.284301757813 1521.91442871094 1687.3564453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR232W /GEN=NAS6 /DB_XREF=GI:6321671 /SEG=NC_001139:+953961,954647 /DEF=Interaction with the 19S regulatory particle of the 26S proteasome detected by coimmunoprecipitation. /NOTE=Nas6p; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence IDA] [pmid 11029046]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence IPI,ISS] [pmid 11029046] --- --- --- --- --- --- S0003464 // NAS6 SGDID:S0003464, Chr VII from 953962-954648, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021469 // cdna:GeneFinder chromosome:SGD1:VII:954136:954648:1 // ensembl // 9 // --- /// YGR232W // cdna:known chromosome:SGD1:VII:953962:954648:1 gene:YGR232W // ensembl // 11 // --- --- No cerevisiae_gene -1.14810442104867 -1.76276637762518 1.05667074374769 -1.05781693765474 1.04810811536266 Max fold change below threshold 4 1.76276637762518 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779890_at YMR033W.S1 Actin-related protein involved in transcriptional regulation; subunit of the chromatin remodeling Snf/Swi complex 1.76271455969501 796.198883056641 1189.00811767578 ARP9 6338 // chromatin remodeling // traceable author statement 5634 // nucleus // inferred from direct assay /// 16514 // SWI/SNF complex // inferred from physical interaction /// 16585 // chromatin remodeling complex // traceable author statement 16251 // general RNA polymerase II transcription factor activity // traceable author statement 1154.20739746094 937.608032226563 654.789733886719 1223.80883789063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR033W /GEN=ARP9 /DB_XREF=GI:6323676 /SEG=NC_001145:+337787,339276 /DEF=involved in transcriptional regulation /NOTE=Arp9p; go_component: SWI/SNF complex [goid GO:0016514] [evidence IPI] [pmid 9726966]; go_component: nucleosome remodeling complex [goid GO:0005679] [evidence TAS] [pmid 9048886]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11011149]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9048886]; go_process: chromatin remodeling [goid GO:0006338] [evidence TAS] [pmid 9048886] --- --- --- --- --- --- S0004636 // ARP9 SGDID:S0004636, Chr XIII from 337787-337816,337903-339276, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000018744 // cdna:Genscan chromosome:SGD1:XIII:338437:339276:1 // ensembl // 11 // --- /// GENEFINDER00000021839 // cdna:GeneFinder chromosome:SGD1:XIII:338437:339276:1 // ensembl // 11 // --- /// YMR033W // cdna:known chromosome:SGD1:XIII:337787:339276:1 gene:YMR033W // ensembl // 11 // --- --- No cerevisiae_gene 1.02724566106912 -1.2310127023123 -1.05556372991192 -1.76271455969501 1.06030236903939 Max fold change below threshold 4 1.76271455969501 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773322_at SPBC800.02.S1 --- 1.76245762830714 --- --- --- --- 9.24826812744141 16.2996807098389 7.85219430923462 7.4907546043396 0.24609400331974 0.0461426004767418 0.030273400247097 0.0676269978284836 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC800.02 /DEF=serine-rich protein --- --- --- --- --- --- SPBC800.02 // |||serine-rich protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.24542111652395 1.76245762830714 1.09150656374542 -1.17779409974164 -1.23462436242186 Max fold change below threshold 4 1.76245762830714 Max fold change below threshold AAPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1778821_at YML059C.S1 Serine esterase that deacylates exogenous lysophospholipids, homolog of human neuropathy target esterase (NTE); mammalian NTE1 deacylates phosphatidylcholine to glycerophosphocholine 1.76216065117124 365.99462890625 613.723571777344 NTE1 46470 // phosphatidylcholine metabolism // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay 4622 // lysophospholipase activity // inferred from direct assay /// 4759 // serine esterase activity // inferred from direct assay /// 16787 // hydrolase activity // inferred from sequence similarity 593.302734375 336.690490722656 395.298767089844 634.144409179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML059C /GEN=OGG1 /DB_XREF=GI:6323581 /SEG=NC_001145:-153219,158258 /DEF=Hypothetical ORF /NOTE=Yml059cp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: hydrolase activity [goid GO:0016787] [evidence ISS] [pmid 10816586]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004524 // span:51-68,73-95,102-124 // numtm:3 S0004524 // YML059C SGDID:S0004524, Chr XIII from 158258-153219, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018668 // cdna:Genscan chromosome:SGD1:XIII:153219:158249:-1 // ensembl // 11 // --- /// GENEFINDER00000022081 // cdna:GeneFinder chromosome:SGD1:XIII:153219:158057:-1 // ensembl // 11 // --- /// YML059C // cdna:known chromosome:SGD1:XIII:153219:158258:-1 gene:YML059C // ensembl // 11 // --- --- No cerevisiae_gene -1.11177825903215 -1.76216065117124 -1.38588832650869 -1.50089700188757 1.06883783343374 Max fold change below threshold 4 1.76216065117124 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778205_at YOL065C.S1 Phosphatidylinositol 4,5-bisphosphate 5-phosphatase with a role in secretion, localizes to the endoplasmic reticulum via the C-terminal tail; lacks the Sac1 domain and proline-rich region found in the other 3 INP proteins 1.76208606689935 524.744766235352 671.189300537109 INP54 6887 // exocytosis // traceable author statement /// 46856 // phosphoinositide dephosphorylation // traceable author statement /// 48017 // inositol lipid-mediated signaling // traceable author statement 5783 // endoplasmic reticulum // inferred from direct assay 4445 // inositol-polyphosphate 5-phosphatase activity // traceable author statement 626.625671386719 433.556671142578 615.932861328125 715.7529296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL065C /GEN=INP54 /DB_XREF=GI:6324507 /SEG=NC_001147:-204730,205884 /DEF=Phosphatidylinositol 4,5-bisphosphate 5-phosphatase with a role in secretion, localizes to the endoplasmic reticulum via the C-terminal tail; lacks the Sac1 domain and proline-rich region found in the other 3 INP proteins /NOTE=Inp54p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11116155]; go_function: inositol-polyphosphate 5-phosphatase activity [goid GO:0004445] [evidence TAS] [pmid 11116155]; go_process: exocytosis [goid GO:0006887] [evidence TAS] [pmid 11116155] --- --- --- --- --- --- S0005426 // INP54 SGDID:S0005426, Chr XV from 205884-204730, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017415 // cdna:Genscan chromosome:SGD1:XV:204730:205884:-1 // ensembl // 11 // --- /// YOL065C // cdna:known chromosome:SGD1:XV:204730:205884:-1 gene:YOL065C // ensembl // 11 // --- --- No cerevisiae_gene -1.76208606689935 -1.44531433396085 1.74446525078568 -1.01736035001532 1.14223365299341 Max fold change below threshold 4 1.76208606689935 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778444_at YPL056C.S1 Hypothetical protein 1.76104632252282 527.290939331055 489.530654907227 --- --- --- --- 472.392883300781 468.263885498047 586.317993164063 506.668426513672 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL056C /GEN=SUR1 /DB_XREF=GI:6325201 /SEG=NC_001148:-453425,453730 /DEF=Hypothetical ORF /NOTE=Ypl056cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005977 // YPL056C SGDID:S0005977, Chr XVI from 453732-453427, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YPL056C // cdna:known chromosome:SGD1:XVI:453427:453732:-1 gene:YPL056C // ensembl // 11 // --- --- No cerevisiae_gene -1.20698018499206 -1.00881767296306 -1.76104632252282 1.24116601644641 1.07255728107798 Max fold change below threshold 4 1.76104632252282 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776771_at SPBC30B4.05.S1 --- 1.760976979944 --- --- --- --- 6.1826696395874 8.30639171600342 4.20566177368164 6.30144453048706 0.107421875 0.111571997404099 0.129638999700546 0.030273400247097 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30B4.05 /GEN=kap109 /DEF=karyopherin (predicted) --- --- --- --- --- --- SPBC30B4.05 // |kap109||karyopherin |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.0597090482788 1.34349596537035 1.760976979944 -1.47008246794299 1.0192109392582 Max fold change below threshold 4 1.760976979944 Max fold change below threshold AAAPAP No 4 0 AAAP 3 1 0 No No x = 1
1779548_at YLR005W.S1 Component of the core form of RNA polymerase transcription factor TFIIH, which has both protein kinase and DNA-dependent ATPase/helicase activities and is essential for transcription and nucleotide excision repair; interacts with Tfb4p 1.76036895934152 1374.47149658203 2235.63098144531 SSL1 717 // nucleotide-excision repair, DNA duplex unwinding // traceable author statement /// 6289 // nucleotide-excision repair // traceable author statement /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 7070 // negative regulation of transcription from RNA polymerase II promoter, mitotic // traceable author statement 112 // nucleotide excision repair factor 3 complex // traceable author statement /// 5675 // transcription factor TFIIH complex // traceable author statement /// 5675 // transcription factor TFIIH complex // inferred from direct assay 16251 // general RNA polymerase II transcription factor activity // traceable author statement 2256.80224609375 1282.00524902344 1466.93774414063 2214.45971679688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR005W /GEN=SSL1 /DB_XREF=GI:6323033 /SEG=NC_001144:+160048,161433 /DEF=Component of RNA polymerase transcription factor TFIIH /NOTE=Ssl1p; go_component: nucleotide excision repair factor 3 complex [goid GO:0000112] [evidence TAS] [pmid 10915862]; go_component: transcription factor TFIIH complex [goid GO:0005675] [evidence TAS] [pmid 9774381]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9774381]; go_process: negative regulation of transcription from Pol II promoter, mitotic [goid GO:0007070] [evidence TAS] [pmid 10384273]; go_process: nucleotide-excision repair [goid GO:0006289] [evidence TAS] [pmid 9774381]; go_process: nucleotide-excision repair, DNA duplex unwinding [goid GO:0000717] [evidence TAS] [pmid 10915862]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 10384286] --- --- --- --- --- --- S0003995 // SSL1 SGDID:S0003995, Chr XII from 160048-161433, Verified ORF // sgd // 11 // --- /// GENSCAN00000017750 // cdna:Genscan chromosome:SGD1:XII:160048:161433:1 // ensembl // 11 // --- /// GENEFINDER00000024900 // cdna:GeneFinder chromosome:SGD1:XII:160048:161433:1 // ensembl // 11 // --- /// YLR005W // cdna:known chromosome:SGD1:XII:160048:161433:1 gene:YLR005W // ensembl // 11 // --- --- No cerevisiae_gene -1.55479175335831 -1.76036895934152 1.09155275143657 -1.53844446031065 -1.01912093002898 Max fold change below threshold 4 1.76036895934152 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776671_at YOL125W.S1 Hypothetical protein 1.76024142341372 332.443908691406 321.716003417969 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 290.90771484375 281.738403320313 383.1494140625 352.524291992188 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL125W /GEN=MDH2 /DB_XREF=GI:6324447 /SEG=NC_001147:+83833,85263 /DEF=Hypothetical ORF /NOTE=Yol125wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005485 // YOL125W SGDID:S0005485, Chr XV from 83833-85263, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017367 // cdna:Genscan chromosome:SGD1:XV:83833:85263:1 // ensembl // 11 // --- /// YOL125W // cdna:known chromosome:SGD1:XV:83833:85263:1 gene:YOL125W // ensembl // 11 // --- --- No cerevisiae_gene 1.76024142341372 -1.03254547983298 -1.10341921765922 1.31708234093515 1.2118079858471 Max fold change below threshold 4 1.76024142341372 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779960_at SPBC12C2.05c.S1 --- 1.76007580277533 --- --- --- --- 7.79870700836182 6.92248296737671 8.42855548858643 13.7263154983521 0.149657994508743 0.24609400331974 0.171387001872063 0.014160200022161 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC12C2.05c /DEF=DAG domain --- --- --- --- --- --- SPBC12C2.05c // |||diacylglycerol binding domain|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.40303724703416 -1.12657655426737 1.15053151089381 1.08076319312282 1.76007580277533 Max fold change below threshold 4 1.76007580277533 Max fold change below threshold APAAAP No 4 0 AAAP 3 1 0 No No x = 1
1777610_at YLR066W.S1 Subunit of signal peptidase complex (Spc1p, Spc2p, Spc3p, Sec11p), which catalyzes cleavage of N-terminal signal sequences of proteins targeted to the secretory pathway; homologous to mammalian SPC22/23 1.75993305052187 365.615127563477 477.471939086914 SPC3 6465 // signal peptide processing // inferred from mutant phenotype /// 6465 // signal peptide processing // inferred from physical interaction /// 6465 // signal peptide processing // inferred from sequence similarity /// 6465 // signal peptide processing // inferred from genetic interaction /// 6465 // signal peptide processing // inferred from direct assay 5787 // signal peptidase complex // inferred from direct assay 9003 // signal peptidase activity // inferred from mutant phenotype 450.141204833984 320.362182617188 410.868072509766 504.802673339844 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR066W /GEN=SPC3 /DB_XREF=GI:6323095 /SEG=NC_001144:+267170,267724 /DEF=signal peptidase subunit /NOTE=Spc3p; go_component: signal peptidase complex [goid GO:0005787] [evidence IDA] [pmid 1846444]; go_function: signal peptidase activity [goid GO:0009003] [evidence IMP] [pmid 9148931]; go_process: signal peptide processing [goid GO:0006465] [evidence IGI] [pmid 9148930]; go_process: signal peptide processing [goid GO:0006465] [evidence IDA,IMP,IPI,ISS] [pmid 9148931] --- --- --- --- --- S0004056 // span:15-32 // numtm:1 S0004056 // SPC3 SGDID:S0004056, Chr XII from 267170-267724, Verified ORF // sgd // 11 // --- /// YLR066W // cdna:known chromosome:SGD1:XII:267170:267724:1 gene:YLR066W // ensembl // 11 // --- GENEFINDER00000024819 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 1.75993305052187 -1.40510094280346 1.33426136424884 -1.09558574869135 1.12143182610003 Max fold change below threshold 4 1.75993305052187 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773465_at YLR087C.S1 Protein required for fermentation at low temperature 1.75990799448195 301.667877197266 247.090866088867 CSF1 6113 // fermentation // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay --- 235.090667724609 291.089172363281 312.24658203125 259.091064453125 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR087C /GEN=CSF1 /DB_XREF=GI:6323116 /SEG=NC_001144:-306856,315732 /DEF=Protein required for fermentation at low temperature /NOTE=Csf1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: fermentation [goid GO:0006113] [evidence IMP] [pmid 10781556] --- --- --- --- --- S0004077 // span:20-42 // numtm:1 S0004077 // CSF1 SGDID:S0004077, Chr XII from 315732-306856, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017886 // cdna:Genscan chromosome:SGD1:XII:306856:315627:-1 // ensembl // 11 // --- /// GENEFINDER00000024843 // cdna:GeneFinder chromosome:SGD1:XII:306856:315732:-1 // ensembl // 11 // --- /// YLR087C // cdna:known chromosome:SGD1:XII:306856:315732:-1 gene:YLR087C // ensembl // 11 // --- --- No cerevisiae_gene 1.37234779581255 1.23819960690345 1.75990799448195 1.32819641482759 1.10208995942208 Max fold change below threshold 4 1.75990799448195 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774387_at YOR339C.S1 Ubiquitin-conjugating enzyme most similar in sequence to Xenopus ubiquitin-conjugating enzyme E2-C, but not a true functional homolog of this E2; unlike E2-C, not required for the degradation of mitotic cyclin Clb2 1.75981380938915 37.5063858032227 22.8543252944946 UBC11 209 // protein polyubiquitination // traceable author statement /// 6513 // protein monoubiquitination // traceable author statement 5737 // cytoplasm // inferred from curator 4840 // ubiquitin conjugating enzyme activity // traceable author statement 22.6901931762695 35.0822563171387 39.9305152893066 23.0184574127197 0.018554700538516 0.00805663969367743 0.018554700538516 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR339C /GEN=UBC11 /DB_XREF=GI:6324915 /SEG=NC_001147:-958357,958827 /DEF=Ubiquitin-conjugating enzyme most similar in sequence to Xenopus ubiquitin-conjugating enzyme E2-C, but not a true functional homolog of this E2; unlike E2-C, not required for the degradation of mitotic cyclin Clb2 /NOTE=Ubc11p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 8982460]; go_function: ubiquitin conjugating enzyme activity [goid GO:0004840] [evidence TAS] [pmid 8982460]; go_process: protein monoubiquitination [goid GO:0006513] [evidence TAS] [pmid 8982460]; go_process: protein polyubiquitination [goid GO:0000209] [evidence TAS] [pmid 8982460] --- --- --- --- --- --- S0005866 // UBC11 SGDID:S0005866, Chr XV from 958827-958357, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017790 // cdna:Genscan chromosome:SGD1:XV:958357:958827:-1 // ensembl // 11 // --- /// YOR339C // cdna:known chromosome:SGD1:XV:958357:958827:-1 gene:YOR339C // ensembl // 11 // --- --- No cerevisiae_gene 1.47231417505226 1.54614180869246 -1.25064428776372 1.75981380938915 1.01446722969258 Max fold change below threshold 4 1.75981380938915 Max fold change below threshold PPPPPP No 3 0 PPPP 0 4 0 No No 3 < x
1771004_at YDR175C.S1 Mitochondrial ribosomal protein of the small subunit 1.75910384884812 1152.41320800781 1030.24108886719 RSM24 6412 // protein biosynthesis // inferred from direct assay /// 9060 // aerobic respiration // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from expression pattern 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // inferred from direct assay 961.21240234375 965.190063476563 1339.63635253906 1099.26977539063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR175C /GEN=RSM24 /DB_XREF=GI:6320380 /SEG=NC_001136:-813187,814146 /DEF=Mitochondrial ribosomal protein of the small subunit /NOTE=Rsm24p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 11278769]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 11278769]; go_process: aerobic respiration [goid GO:0009060] [evidence IEP,IMP] [pmid 10929718]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 11278769] --- --- --- --- --- --- S0002582 // RSM24 SGDID:S0002582, Chr IV from 814147-813188, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023499 // cdna:GeneFinder chromosome:SGD1:IV:813188:814147:-1 // ensembl // 11 // --- /// GENSCAN00000025231 // cdna:Genscan chromosome:SGD1:IV:813188:814147:-1 // ensembl // 11 // --- /// YDR175C // cdna:known chromosome:SGD1:IV:813188:814147:-1 gene:YDR175C // ensembl // 11 // --- --- No cerevisiae_gene 1.75910384884812 1.00413817083832 1.26375279836104 1.3936944105929 1.14362837257431 Max fold change below threshold 4 1.75910384884812 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776117_at YNL145W.S1 Mating pheromone a-factor, made by a cells; interacts with alpha cells to induce cell cycle arrest and other responses leading to mating; biogenesis involves C-terminal modification, N-terminal proteolysis, and export; also encoded by MFA1 1.75889158275743 76.8719310760498 87.2110252380371 MFA2 750 // signal transduction during conjugation with cellular fusion // inferred from genetic interaction /// 750 // signal transduction during conjugation with cellular fusion // inferred from mutant phenotype 5576 // extracellular region // inferred from direct assay 772 // mating pheromone activity // inferred from mutant phenotype 88.9542388916016 98.0715637207031 55.6722984313965 85.4678115844727 0.014160200022161 0.030273400247097 0.0676269978284836 0.00415039015933871 P P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL145W /GEN=MFA2 /DB_XREF=GI:6324184 /SEG=NC_001146:+352414,352530 /DEF=lipopeptide mating pheromone /NOTE=Mfa2p; go_component: extracellular [goid GO:0005576] [evidence IDA] [pmid 2046670]; go_function: pheromone activity [goid GO:0005186] [evidence TAS] [pmid 1944269]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence IGI,IMP] [pmid 3285180] --- --- --- --- --- --- S0005089 // MFA2 SGDID:S0005089, Chr XIV from 352414-352530, Verified ORF // sgd // 11 // --- /// S48033 // MFA2=a-mating factor [Saccharomyces cerevisiae, mRNA, 328 nt]. // gb // 11 // --- /// YNL145W // cdna:known chromosome:SGD1:XIV:352414:352530:1 gene:YNL145W // ensembl // 11 // --- --- No cerevisiae_gene -1.75889158275743 1.1024945516111 -1.30280394132661 -1.59781868897002 -1.04079228475018 Max fold change below threshold 4 1.75889158275743 Max fold change below threshold PPPPAP No 3 0 PPAP 1 3 0 No No 2 < x = 3
1778702_at YPR033C.S1 Cytoplasmic and mitochondrial histidine tRNA synthetase; encoded by a single nuclear gene that specifies two messages; efficient mitochondrial localization requires both a presequence and an amino-terminal sequence 1.75799465860043 1378.65112304688 1431.6474609375 HTS1 6427 // histidyl-tRNA aminoacylation // inferred from mutant phenotype /// 6427 // histidyl-tRNA aminoacylation // traceable author statement 5737 // cytoplasm // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from mutant phenotype 4821 // histidine-tRNA ligase activity // traceable author statement 1375.33081054688 1059.37951660156 1697.92272949219 1487.96411132813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR033C /GEN=HTS1 /DB_XREF=GI:6325290 /SEG=NC_001148:-637374,639014 /DEF=Nuclear gene that specifies two messages for cytoplasmic and mitochondrial forms /NOTE=Hts1p; go_component: cytoplasm [goid GO:0005737] [evidence IMP] [pmid 3521891]; go_component: mitochondrion [goid GO:0005739] [evidence IMP] [pmid 3521891]; go_function: histidine-tRNA ligase activity [goid GO:0004821] [evidence TAS] [pmid 1459448]; go_process: histidyl-tRNA aminoacylation [goid GO:0006427] [evidence IMP,TAS] [pmid 1459448] --- --- --- --- --- --- S0006237 // HTS1 SGDID:S0006237, Chr XVI from 639016-637376, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017212 // cdna:Genscan chromosome:SGD1:XVI:637376:638956:-1 // ensembl // 11 // --- /// GENEFINDER00000020922 // cdna:GeneFinder chromosome:SGD1:XVI:637376:638956:-1 // ensembl // 11 // --- /// YPR033C // cdna:known chromosome:SGD1:XVI:637376:639016:-1 gene:YPR033C // ensembl // 11 // --- --- No cerevisiae_gene 1.75799465860043 -1.29824183778715 -1.09655157915473 1.23455587300996 1.08189542466257 Max fold change below threshold 4 1.75799465860043 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778856_at YHR116W.S1 Mitochondrial intermembrane space protein that functions in mitochondrial copper homeostasis, essential for functional cytochrome oxidase expression; homologous to Cox17p 1.75785121869284 115.155265808105 198.367713928223 COX23 9060 // aerobic respiration // inferred from expression pattern /// 9060 // aerobic respiration // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 179.651611328125 102.199554443359 128.110977172852 217.08381652832 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR116W /GEN=COX23 /DB_XREF=GI:6321908 /SEG=NC_001140:+341667,342122 /DEF=Protein that functions in mitochondrial copper homeostasis and is essential for functional cytochrome oxidase expression; homologous to COX17, localized to the mitochondrial intermembrane space /NOTE=Cox23p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: aerobic respiration [goid GO:0009060] [evidence IEP,IMP] [pmid 10929718] --- --- --- --- --- --- S0001158 // COX23 SGDID:S0001158, Chr VIII from 341667-342122, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020139 // cdna:GeneFinder chromosome:SGD1:VIII:341667:342122:1 // ensembl // 11 // --- /// GENSCAN00000016653 // cdna:Genscan chromosome:SGD1:VIII:341733:342122:1 // ensembl // 9 // --- /// YHR116W // cdna:known chromosome:SGD1:VIII:341667:342122:1 gene:YHR116W // ensembl // 11 // --- --- No cerevisiae_gene -1.07859692459682 -1.75785121869284 1.16590355002969 -1.40231239580456 1.20835997475039 Max fold change below threshold 4 1.75785121869284 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772780_at YNL306W.S1 Mitochondrial ribosomal protein of the small subunit; essential for viability, unlike most other mitoribosomal proteins 1.7576259498175 945.043212890625 1230.62023925781 MRPS18 6412 // protein biosynthesis // inferred from physical interaction 5763 // mitochondrial small ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // inferred from sequence similarity /// 3735 // structural constituent of ribosome // inferred from physical interaction 1168.27307128906 664.688110351563 1225.39831542969 1292.96740722656 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL306W /GEN=MRPS18 /DB_XREF=GI:6324023 /SEG=NC_001146:+58155,58808 /DEF=Mitochondrial ribosomal protein of the small subunit; essential for viability, unlike most other mitoribosomal proteins /NOTE=Mrps18p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IPI] [pmid 9151978]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IPI,ISS] [pmid 9151978]; go_process: protein biosynthesis [goid GO:0006412] [evidence IPI] [pmid 9151978] --- --- --- --- --- --- S0005250 // MRPS18 SGDID:S0005250, Chr XIV from 58155-58808, Verified ORF // sgd // 11 // --- /// YNL306W // cdna:known chromosome:SGD1:XIV:58155:58808:1 gene:YNL306W // ensembl // 11 // --- --- No cerevisiae_gene 1.03662862508755 -1.7576259498175 1.41076431485818 1.04889716757538 1.10673389552659 Max fold change below threshold 4 1.7576259498175 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777611_at YGL002W.S1 Protein with similarity to Emp24p and Erv25p, member of the p24 family involved in ER to Golgi transport 1.75735748878062 477.297805786133 713.940704345703 ERP6 45045 // secretory pathway // inferred from mutant phenotype /// 45045 // secretory pathway // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity --- 660.759765625 383.568878173828 571.026733398438 767.121643066406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL002W /GEN=ERP6 /DB_XREF=GI:6321436 /SEG=NC_001139:+494519,495169 /DEF=Protein with similarity to Emp24p and Erv25p, member of the p24 family involved in ER to Golgi transport /NOTE=Erp6p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 10359606]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: secretory pathway [goid GO:0045045] [evidence IGI,IMP] [pmid 10359606] --- --- --- --- --- S0002970 // span:5-27,184-203 // numtm:2 S0002970 // ERP6 SGDID:S0002970, Chr VII from 494521-495171, Verified ORF // sgd // 11 // --- /// YGL002W // cdna:known chromosome:SGD1:VII:494521:495171:1 gene:YGL002W // ensembl // 11 // --- --- No cerevisiae_gene -1.75735748878062 -1.72266261217771 1.19656807829529 -1.15714331217476 1.1609690586121 Max fold change below threshold 4 1.75735748878062 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779626_at YHR132W-A.S1 Hypothetical protein 1.75730417302574 1283.3291015625 893.789978027344 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 836.036071777344 1097.48852539063 1469.16967773438 951.543884277344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR132W-A /GEN=ECM14 /DB_XREF=GI:6862571 /SEG=NC_001140:+370055,370450 /DEF=Hypothetical ORF /NOTE=Yhr132w-ap; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007496 // YHR132W-A SGDID:S0007496, Chr VIII from 370056-370451, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020116 // cdna:GeneFinder chromosome:SGD1:VIII:370056:370451:1 // ensembl // 11 // --- /// YHR132W-A // cdna:known chromosome:SGD1:VIII:370056:370451:1 gene:YHR132W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.24229112565822 1.31272867575852 1.6505022224672 1.75730417302574 1.13816127844154 Max fold change below threshold 4 1.75730417302574 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775718_at YOR163W.S1 Diadenosine polyphosphate hydrolase, member of the MutT family of nucleotide hydrolases with high specificity for diadenosine hexa- and pentaphosphates, required for efficient hydrolysis of diphosphorylated inositol polyphosphates 1.7571216647183 576.45280456543 905.395080566406 DDP1 15959 // diadenosine polyphosphate metabolism // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from direct assay 867.999816894531 493.989593505859 658.916015625 942.790344238281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR163W /GEN=DDP1 /DB_XREF=GI:6324737 /SEG=NC_001147:+642741,643307 /DEF=Diadenosine polyphosphate hydrolase, member of the MutT family of nucleotide hydrolases with high specificity for diadenosine hexa- and pentaphosphates, required for efficient hydrolysis of diphosphorylated inositol polyphosphates /NOTE=Ddp1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: diphosphoinositol-polyphosphate diphosphatase activity [goid GO:0008486] [evidence IDA] [pmid 10419486]; go_process: diadenosine polyphosphate metabolism [goid GO:0015959] [evidence IDA] [pmid 10085096] --- --- --- --- --- --- S0005689 // DDP1 SGDID:S0005689, Chr XV from 642741-643307, Verified ORF // sgd // 11 // --- /// GENSCAN00000017587 // cdna:Genscan chromosome:SGD1:XV:642741:643307:1 // ensembl // 11 // --- /// GENEFINDER00000022631 // cdna:GeneFinder chromosome:SGD1:XV:642741:643307:1 // ensembl // 11 // --- /// YOR163W // cdna:known chromosome:SGD1:XV:642741:643307:1 gene:YOR163W // ensembl // 11 // --- --- No cerevisiae_gene -1.50367329857369 -1.7571216647183 1.46962927252337 -1.31731479628889 1.08616422018536 Max fold change below threshold 4 1.7571216647183 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775055_at YCR018C.S1 Protein involved in the processing of pre-rRNA to mature rRNA; contains a C2/C2 zinc finger motif; srd1 mutation suppresses defects caused by the rrp1-1 mutation 1.75711807828135 81.8200187683105 51.4057674407959 SRD1 6364 // rRNA processing // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 54.4080085754395 95.6012954711914 68.0387420654297 48.4035263061523 0.00292969006113708 0.00805663969367743 0.0107421996071935 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR018C /GEN=SRD1 /DB_XREF=GI:10383786 /SEG=NC_001135:-148235,148900 /DEF=involved in the processing of pre-rRNA to mature rRNA /NOTE=Srd1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: rRNA processing [goid GO:0006364] [evidence IGI] [pmid 2179050] --- --- --- --- --- --- S0000611 // SRD1 SGDID:S0000611, Chr III from 148900-148235, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023360 // cdna:GeneFinder chromosome:SGD1:III:148235:148834:-1 // ensembl // 10 // --- /// YCR018C // cdna:known chromosome:SGD1:III:148235:148900:-1 gene:YCR018C // ensembl // 10 // --- --- No cerevisiae_gene 1.13080473426797 1.75711807828135 1.26549238494474 1.25052807200415 -1.124050513 Max fold change below threshold 4 1.75711807828135 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1776269_at YER151C.S1 Ubiquitin-specific protease that interacts with Bre5p to co-regulate anterograde and retrograde transport between endoplasmic reticulum and Golgi compartments; inhibitor of gene silencing; cleaves ubiquitin fusions but not polyubiquitin 1.75702176245454 655.492431640625 841.384185791016 UBP3 16579 // protein deubiquitination // traceable author statement 5737 // cytoplasm // inferred from curator 4843 // ubiquitin-specific protease activity // inferred from direct assay 767.786499023438 581.771301269531 729.213562011719 914.981872558594 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER151C /GEN=UBP3 /DB_XREF=GI:6320999 /SEG=NC_001137:-469681,472419 /DEF=Ubiquitin-specific protease that interacts with Bre5p to co-regulate anterograde and retrograde transport between endoplasmic reticulum and Golgi compartments; inhibitor of gene sillencing; cleaves ubiquitin fusions but not polyubiquitin /NOTE=Ubp3p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 1429680]; go_function: ubiquitin-specific protease activity [goid GO:0004843] [evidence IDA] [pmid 1429680]; go_process: protein deubiquitination [goid GO:0016579] [evidence TAS] [pmid 8982460] --- --- --- --- --- --- S0000953 // UBP3 SGDID:S0000953, Chr V from 472419-469681, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016930 // cdna:Genscan chromosome:SGD1:V:469681:472413:-1 // ensembl // 11 // --- /// GENEFINDER00000019724 // cdna:GeneFinder chromosome:SGD1:V:469681:474725:-1 // ensembl // 11 // --- /// YER151C // cdna:known chromosome:SGD1:V:469681:472419:-1 gene:YER151C // ensembl // 11 // --- --- No cerevisiae_gene -1.75702176245454 -1.31973938444194 1.08797389131163 -1.05289662592849 1.19171393834403 Max fold change below threshold 4 1.75702176245454 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775777_at SPAC23H4.16c.S1 --- 1.75660808018156 --- --- --- --- 11.5596704483032 6.5806770324707 12.9904327392578 7.55044841766357 0.129638999700546 0.0952147990465164 0.014160200022161 0.129638999700546 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23H4.16c /DEF=sequence orphan --- --- --- --- --- --- SPAC23H4.16c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.41723468370891 -1.75660808018156 -1.26097475822773 1.12377189275016 -1.53099124831585 Max fold change below threshold 4 1.75660808018156 Max fold change below threshold APAAPA No 4 0 AAPA 3 1 0 No No x = 1
1775791_at YFL029C.S1 Cyclin-dependent kinase-activating kinase required for passage through the cell cycle, phosphorylates and activates Cdc28p; nucleotide-binding pocket differs significantly from those of most other protein kinases 1.75645223833831 124.306690216064 183.111221313477 CAK1 6468 // protein amino acid phosphorylation // inferred from direct assay /// 7049 // cell cycle // inferred from mutant phenotype /// 7126 // meiosis // inferred from genetic interaction /// 7126 // meiosis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4672 // protein kinase activity // inferred from direct assay 181.465682983398 103.313758850098 145.299621582031 184.756759643555 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL029C /GEN=CAK1 /DB_XREF=GI:14318490 /SEG=NC_001138:-78053,79159 /DEF=binds and phosphorylates Cdc28p /NOTE=Cak1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9819350]; go_function: protein kinase activity [goid GO:0004672] [evidence IDA] [pmid 8752210]; go_process: cell cycle [goid GO:0007049] [evidence IMP] [pmid 8752210]; go_process: meiosis [goid GO:0007126] [evidence IGI,IMP] [pmid 11739722]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 8752210] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-34 /// hanks // 2.1.17 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH // 3.0E-27 --- --- S0001865 // CAK1 SGDID:S0001865, Chr VI from 79159-78053, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018549 // cdna:GeneFinder chromosome:SGD1:VI:78053:78604:-1 // ensembl // 9 // --- /// GENSCAN00000023217 // cdna:Genscan chromosome:SGD1:VI:78053:78910:-1 // ensembl // 11 // --- /// YFL029C // cdna:known chromosome:SGD1:VI:78053:79159:-1 gene:YFL029C // ensembl // 11 // --- --- No cerevisiae_gene -1.17234014867506 -1.75645223833831 -1.19816412679456 -1.24890678315324 1.01813608284525 Max fold change below threshold 4 1.75645223833831 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777642_at YOL116W.S1 Transcriptional activator involved in regulation of invertase and glucoamylase expression, invasive growth and pseudohyphal differentiation, iron uptake, chromium accumulation, and response to osmotic stress; localizes to the nucleus 1.75637041178388 690.017913818359 477.254806518555 MSN1 1403 // invasive growth (sensu Saccharomyces) // inferred from mutant phenotype /// 6972 // hyperosmotic response // inferred from genetic interaction /// 6972 // hyperosmotic response // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 16563 // transcriptional activator activity // traceable author statement /// 16563 // transcriptional activator activity // inferred from direct assay 443.012817382813 601.941223144531 778.094604492188 511.496795654297 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL116W /GEN=MSN1 /DB_XREF=GI:6324456 /SEG=NC_001147:+99808,100956 /DEF=Multifunctional protein involved in invertase activity, iron uptake, starch degradation, pseudohyphal growth, and osmotic gene expression; multicopy supressor of snf1 and sta10 mutations /NOTE=Msn1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 2263457]; go_function: transcriptional activator activity [goid GO:0016563] [evidence TAS] [pmid 14523573]; go_process: hyperosmotic response [goid GO:0006972] [evidence IGI,IMP] [pmid 10409737] --- --- --- --- --- --- S0005476 // MSN1 SGDID:S0005476, Chr XV from 99808-100956, Verified ORF // sgd // 11 // --- /// GENSCAN00000017373 // cdna:Genscan chromosome:SGD1:XV:99808:100956:1 // ensembl // 11 // --- /// GENEFINDER00000022799 // cdna:GeneFinder chromosome:SGD1:XV:99808:100956:1 // ensembl // 11 // --- /// YOL116W // cdna:known chromosome:SGD1:XV:99808:100956:1 gene:YOL116W // ensembl // 11 // --- --- No cerevisiae_gene 1.66068589957844 1.35874448667337 1.08871843933074 1.75637041178388 1.15458690038827 Max fold change below threshold 4 1.75637041178388 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770776_at YER019C-A.S1 Ssh1p-Sss1p-Sbh2p complex component, involved in protein translocation into the endoplasmic reticulum; homologous to Sbh1p 1.75624209364216 4042.97326660156 2503.63842773438 SBH2 6613 // cotranslational protein-membrane targeting // traceable author statement 5783 // endoplasmic reticulum // traceable author statement /// 5784 // translocon complex // traceable author statement 5086 // ARF guanyl-nucleotide exchange factor activity // inferred from direct assay /// 8565 // protein transporter activity // traceable author statement 2656.3681640625 4665.2255859375 3420.72094726563 2350.90869140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER019C-A /GEN=SBH2 /DB_XREF=GI:6320857 /SEG=NC_001137:-194272,194538 /DEF=Ssh1p-Sss1p-Sbh2p complex component, involved in protein translocation into the endoplasmic reticulum /NOTE=Sbh2p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS] [pmid 8939984]; go_component: translocon [goid GO:0005784] [evidence TAS] [pmid 10921929]; go_function: protein transporter activity [goid GO:0008565] [evidence TAS] [pmid 10921929]; go_process: cotranslational membrane targeting [goid GO:0006613] [evidence TAS] [pmid 10921929] --- --- --- --- --- CAA90305.1 // span:59-81 // numtm:1 /// AAT01101.1 // span:59-81 // numtm:1 /// S0002127 // span:59-81 // numtm:1 S0002127 // SBH2 SGDID:S0002127, Chr V from 194538-194272, reverse complement, Verified ORF // sgd // 11 // --- /// Z50012 // S.cerevisiae mRNA for Sec61 beta 2. // gb // 11 // --- /// L38891 // Saccharomyces cerevisiae Sec61 beta-subunit homolog, second form (SBHV2) mRNA, complete cds. // gb // 11 // --- /// YER019C-A // cdna:known chromosome:SGD1:V:194272:194538:-1 gene:YER019C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.07133503774368 1.75624209364216 -1.06066117389498 1.28774354155569 -1.12993251238249 Max fold change below threshold 4 1.75624209364216 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778276_at SPAC18G6.03.S1 --- 1.75584926563262 --- --- --- --- 14.4258089065552 12.8555574417114 25.3295459747314 20.1412239074707 0.0952147990465164 0.129638999700546 0.149657994508743 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC18G6.03 /GEN=ypt3 /DEF=GTPase --- --- --- --- --- --- X52732 // Schizosaccharomyces pombe mRNA for a ras-related GTP-binding protein. // gb // 11 // --- /// SPAC18G6.03 // |ypt3||GTPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.03633549204632 -1.12214573128886 1.4849388396844 1.75584926563262 1.39619372736307 Max fold change below threshold 4 1.75584926563262 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777140_at YDL126C.S1 ATPase in ER, nuclear membrane and cytosol with homology to mammalian p97; in a complex with Npl4p and Ufd1p participates in retrotranslocation of ubiquitinated proteins from the ER into the cytosol for degradation by the proteasome 1.75577020003025 5124.94140625 4525.42309570313 CDC48 6511 // ubiquitin-dependent protein catabolism // inferred from physical interaction /// 6511 // ubiquitin-dependent protein catabolism // inferred from direct assay /// 6906 // vesicle fusion // inferred from direct assay /// 6915 // apoptosis // traceable author statement /// 7049 // cell cycle // inferred from mutant phenotype /// 15031 // protein transport // inferred from direct assay /// 30433 // ER-associated protein catabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // inferred from direct assay /// 5792 // microsome // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 16887 // ATPase activity // inferred from direct assay 5110.52880859375 5995.29150390625 4254.59130859375 3940.3173828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL126C /GEN=CDC48 /DB_XREF=GI:6320077 /SEG=NC_001136:-236157,238664 /DEF=ATPase in ER, nuclear membrane and cytosol with homology to mammalian p97; in a complex with Npl4p and Ufd1p participates in retrotranslocation of ubiquitinated proteins from the ER into the cytosol for degradation by the proteasome /NOTE=Cdc48p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 11740563]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11740563]; go_component: microsome [goid GO:0005792] [evidence IDA] [pmid 1860879]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9436996]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 7492595]; go_process: ER-associated protein catabolism [goid GO:0030433] [evidence IMP] [pmid 11756557]; go_process: apoptosis [goid GO:0006915] [evidence TAS] [pmid 11738144]; go_process: cell cycle [goid GO:0007049] [evidence IMP] [pmid 1860879]; go_process: protein transport [goid GO:0015031] [evidence IDA] [pmid 11740563]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence IDA,IPI] [pmid 8890162]; go_process: vesicle fusion [goid GO:0006906] [evidence IDA] [pmid 7553849] --- --- --- --- scop // a.4.5.CAP C-terminal domain-like // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; CAP C-terminal domain-like // 5.90000009536743 --- S0002284 // CDC48 SGDID:S0002284, Chr IV from 238664-236157, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023577 // cdna:GeneFinder chromosome:SGD1:IV:236157:238664:-1 // ensembl // 11 // --- /// GENSCAN00000025005 // cdna:Genscan chromosome:SGD1:IV:236157:238664:-1 // ensembl // 11 // --- /// YDL126C // cdna:known chromosome:SGD1:IV:236157:238664:-1 gene:YDL126C // ensembl // 11 // --- --- No cerevisiae_gene -1.75577020003025 1.17312546870389 -1.27667500758099 -1.2011797227788 -1.29698405282926 Max fold change below threshold 4 1.75577020003025 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772064_at YLR368W.S1 F box protein, component of protein ubiquitin ligases; promotes ubiquitin-mediated degradation of Gal4p; required for normal mitochondrial fusion 1.75565184820649 402.613891601563 642.157012939453 MDM30 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype /// 8053 // mitochondrial fusion // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay --- 609.788818359375 354.995544433594 450.232238769531 674.525207519531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR368W /GEN=MDM30 /DB_XREF=GI:6323400 /SEG=NC_001144:+857539,859335 /DEF=F-box protein, loss of mitochondrial function. Mitochondrial Distribution and Morphology /NOTE=Mdm30p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence IMP] [pmid 11907266] --- --- --- --- --- --- S0004360 // MDM30 SGDID:S0004360, Chr XII from 857539-859335, Verified ORF // sgd // 11 // --- /// GENSCAN00000018097 // cdna:Genscan chromosome:SGD1:XII:858094:859335:1 // ensembl // 11 // --- /// GENEFINDER00000024544 // cdna:GeneFinder chromosome:SGD1:XII:858094:859335:1 // ensembl // 11 // --- /// YLR368W // cdna:known chromosome:SGD1:XII:857539:859335:1 gene:YLR368W // ensembl // 11 // --- --- No cerevisiae_gene -1.75565184820649 -1.71773654041859 1.28990138908073 -1.35438728249649 1.1061619813468 Max fold change below threshold 4 1.75565184820649 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769392_at YOR192C-C.S1 TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// Hypothetical protein /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// Identified by expression profiling and mass spectrometry /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// Ty ORF /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// Integral membrane protein involved in glycosylphosphatidylinositol (GPI) anchor synthesis; putative alpha 1,2 mannosyltransferase required for addition of the third mannose onto the GPI core structure; human PIG-Bp is a functional homolog /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// Similar to TyB and TyA /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition /// TyA Gag protein; the main structural constituent of virus-like particles (VLPs) /// TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition 1.75528460469173 440.028411865234 271.146621704102 GPI10 6319 // Ty element transposition // inferred from sequence similarity /// 6506 // GPI anchor biosynthesis // inferred from mutant phenotype 943 // retrotransposon nucleocapsid // inferred from sequence similarity /// 5783 // endoplasmic reticulum // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity 3723 // RNA binding // inferred from sequence similarity /// 5515 // protein binding // inferred from sequence similarity /// 3887 // DNA-directed DNA polymerase activity // inferred from sequence similarity /// 3964 // RNA-directed DNA polymerase activity // inferred from sequence similarity /// 4540 // ribonuclease activity // inferred from sequence similarity /// 8233 // peptidase activity // inferred from sequence similarity /// 30 // mannosyltransferase activity // inferred from mutant phenotype 284.259155273438 498.955718994141 381.101104736328 258.034088134766 0.000244141003349796 0.000244141003349796 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR192C-C /GEN=RIS1 /DB_XREF=GI:33438885 /SEG=NC_001147:-703988,704224 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Yor192c-cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.70000004768372 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.59999990463257 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.70000004768372 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.79999995231628 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.90000009536743 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.69999980926514 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.80000019073486 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.90000009536743 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 6.30000019073486 /// scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 9.19999980926514 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 7.59999990463257 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 7.80000019073486 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.39999961853027 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.5 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.69999980926514 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.89999961853027 S0003110 // span:87-109,135-157,202-224,255-272,285-304,334-356,368-390,394-413,426-448 // numtm:9 /// S0006128 // span:7-29 // numtm:1 S0028857 // YOR192C-C SGDID:S0028857, Chr XV from 704224-703988, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YOR192C-C // cdna:known chromosome:SGD1:XV:703988:704224:-1 gene:YOR192C-C // ensembl // 11 // --- --- No cerevisiae_gene 1.40821091267004 1.75528460469173 -1.26220406052658 1.3406819012381 -1.10163411868658 Max fold change below threshold 4 1.75528460469173 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775027_at SPBC9B6.08.S1 --- 1.75452059806876 --- --- --- --- 4.74358558654785 8.32271862030029 3.70803070068359 4.79330539703369 0.398925989866257 0.274170011281967 0.424072265625 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC9B6.08 /GEN=clc1 /DEF=clathrin light chain --- --- --- --- --- --- AB011822 // Schizosaccharomyces pombe mRNA for clathrin light chain, partial cds. // gb // 11 // --- /// SPBC9B6.08 // |clc1||clathrin light chain |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.22114048825796 1.75452059806876 1.16028285025563 -1.27927354691895 1.01048148274732 Max fold change below threshold 4 1.75452059806876 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769474_at YPL264C.S1 Hypothetical protein 1.7543178046598 390.086151123047 269.257110595703 --- --- 16021 // integral to membrane // inferred from sequence similarity --- 256.370208740234 330.41748046875 449.754821777344 282.144012451172 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL264C /GEN=DIP5 /DB_XREF=GI:6324991 /SEG=NC_001148:-43283,44344 /DEF=Hypothetical ORF /NOTE=Ypl264cp; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 12524434]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0006185 // span:13-32,52-69,90-112,117-136,143-165,187-209,222-244,254-271,284-301,305-327 // numtm:10 S0006185 // YPL264C SGDID:S0006185, Chr XVI from 44344-43283, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016981 // cdna:Genscan chromosome:SGD1:XVI:43283:43687:-1 // ensembl // 9 // --- /// YPL264C // cdna:known chromosome:SGD1:XVI:43283:44344:-1 gene:YPL264C // ensembl // 11 // --- --- No cerevisiae_gene 1.20667038935503 1.28882947083584 1.11598348669087 1.7543178046598 1.10053353639483 Max fold change below threshold 4 1.7543178046598 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774988_at YDR402C.S1 N-formyltyrosine oxidase, sporulation-specific microsomal enzyme required for spore wall maturation, involved in the production of a soluble LL-dityrosine-containing precursor of the spore wall, homologous to cytochrome P-450s 1.75422751923486 35.8088531494141 63.1509952545166 DIT2 30476 // spore wall assembly (sensu Fungi) // inferred from direct assay /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype --- 16491 // oxidoreductase activity // inferred from sequence similarity 60.966365814209 36.8637390136719 34.7539672851563 65.3356246948242 0.000244141003349796 0.00292969006113708 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR402C /GEN=DIT2 /DB_XREF=GI:6320610 /SEG=NC_001136:-1272222,1273691 /DEF=Sporulation-specific enzyme required for spore wall maturation, involved in the production of a soluble LL-dityrosine-containing precursor of the spore wall, homologous to cytochrome P-450s /NOTE=Dit2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: catalytic activity [goid GO:0003824] [evidence IDA] [pmid 8183942]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence IDA,IMP] [pmid 8183942] --- --- --- p450 // CP11_OPSTA // Animalia; CYP1A; Ota; CP11_OPSTA; Opsanus tau; Q92095 // 1.0E-170 --- S0002810 // span:7-29 // numtm:1 S0002810 // DIT2 SGDID:S0002810, Chr IV from 1273693-1272224, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025419 // cdna:Genscan chromosome:SGD1:IV:1272224:1273507:-1 // ensembl // 11 // --- /// YDR402C // cdna:known chromosome:SGD1:IV:1272224:1273693:-1 gene:YDR402C // ensembl // 11 // --- YDR401W // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene 1.37934185447886 -1.65383022572935 1.20104477752957 -1.75422751923486 1.07166671036175 Max fold change below threshold 4 1.75422751923486 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775537_at YNL146W.S1 Hypothetical protein 1.75394690635123 49.7830429077148 99.8044319152832 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 74.1338500976563 57.2992134094238 42.2668724060059 125.47501373291 0.000732421991415322 0.00195312988944352 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL146W /GEN=LSM7 /DB_XREF=GI:6324183 /SEG=NC_001146:+351715,352017 /DEF=Hypothetical ORF /NOTE=Ynl146wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005090 // span:12-31,82-99 // numtm:2 S0005090 // YNL146W SGDID:S0005090, Chr XIV from 351715-352017, Uncharacterized ORF // sgd // 9 // --- /// YNL146W // cdna:known chromosome:SGD1:XIV:351715:352017:1 gene:YNL146W // ensembl // 9 // --- --- No cerevisiae_gene 1.0923212737597 -1.29380223019717 -1.45451998000439 -1.75394690635123 1.69254684017655 Max fold change below threshold 4 1.75394690635123 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771538_at SPBC428.20c.S1 --- 1.75363790603174 --- --- --- --- 4.54612016677856 5.17501735687256 7.5770320892334 2.59239387512207 0.633789002895355 0.42333984375 0.432372987270355 0.49169921875 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC428.20c /GEN=alp6 /DEF=gamma tubulin complex (predicted) --- --- --- --- --- --- SPBC428.20c // |alp6|SPBC902.01c|gamma tubulin complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.56583434969598 1.13833712418993 -1.07226031329793 1.66670299315968 -1.75363790603174 Max fold change below threshold 4 1.75363790603174 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774527_at YBR207W.S1 Putative high affinity iron transporter involved in transport of intravacuolar stores of iron; forms complex with Fet5p; expression is regulated by iron; proposed to play indirect role in endocytosis 1.75350160584039 862.282104492188 1236.95758056641 FTH1 6827 // high affinity iron ion transport // inferred from physical interaction /// 6897 // endocytosis // inferred from mutant phenotype 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay 5381 // iron ion transporter activity // traceable author statement 1215.05053710938 692.928100585938 1031.63610839844 1258.86462402344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR207W /GEN=FTH1 /DB_XREF=GI:6319684 /SEG=NC_001134:+635103,636500 /DEF=Putative high affinity iron transporter involved in transport of intravacuolar stores of iron; forms complex with Fet5p; expression is regulated by iron; proposed to play indirect role in endocytosis /NOTE=Fth1p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14562095]; go_function: iron ion transporter activity [goid GO:0005381] [evidence TAS] [pmid 10608875]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 11378903]; go_process: high affinity iron ion transport [goid GO:0006827] [evidence IPI] [pmid 10608875] --- --- --- --- --- S0000411 // span:10-32,134-156,169-191,231-253,263-285,292-314,366-388 // numtm:7 S0000411 // FTH1 SGDID:S0000411, Chr II from 635141-636538, Verified ORF // sgd // 11 // --- /// GENSCAN00000021306 // cdna:Genscan chromosome:SGD1:II:635141:636538:1 // ensembl // 11 // --- /// GENEFINDER00000022382 // cdna:GeneFinder chromosome:SGD1:II:635141:636538:1 // ensembl // 11 // --- /// YBR207W // cdna:known chromosome:SGD1:II:635141:636538:1 gene:YBR207W // ensembl // 11 // --- --- No cerevisiae_gene -1.74120131890346 -1.75350160584039 1.22083027667919 -1.17778984975204 1.03605947701426 Max fold change below threshold 4 1.75350160584039 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772977_at YGL004C.S1 Putative non-ATPase subunit of the 19S regulatory particle of the 26S proteasome; localized to the cytoplasm 1.75294185805006 902.226959228516 607.877288818359 RPN14 6508 // proteolysis and peptidolysis // RCA 5737 // cytoplasm // inferred from direct assay /// 5838 // proteasome regulatory particle (sensu Eukaryota) // RCA 4175 // endopeptidase activity // RCA 576.277893066406 794.272277832031 1010.181640625 639.476684570313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL004C /GEN=RPN14 /DB_XREF=GI:6321434 /SEG=NC_001139:-490705,491958 /DEF=Hypothetical ORF /NOTE=Rpn14p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence TAS] [pmid 14566057]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 14566057]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence TAS] [pmid 14566057] --- --- --- --- scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 2.40000009536743 --- S0002972 // RPN14 SGDID:S0002972, Chr VII from 491960-490707, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019338 // cdna:Genscan chromosome:SGD1:VII:490707:491960:-1 // ensembl // 11 // --- /// GENEFINDER00000021527 // cdna:GeneFinder chromosome:SGD1:VII:490707:491960:-1 // ensembl // 11 // --- /// YGL004C // cdna:known chromosome:SGD1:VII:490707:491960:-1 gene:YGL004C // ensembl // 11 // --- --- No cerevisiae_gene -1.68726324693567 1.37827997115361 1.33360990673644 1.75294185805006 1.10966721483558 Max fold change below threshold 4 1.75294185805006 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775508_at SPAC22H10.11c.S1 --- 1.75236392284673 --- --- --- --- 7.9052357673645 10.5274057388306 13.8528499603271 5.79123067855835 0.219482004642487 0.0561522990465164 0.0107421996071935 0.0375977009534836 A M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22H10.11c /DEF=sequence orphan --- --- --- --- --- --- SPAC22H10.11c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.51086785347796 1.33170041332496 1.26398757521874 1.75236392284673 -1.36503555222435 Max fold change below threshold 4 1.75236392284673 Max fold change below threshold AAMPPP No 4 0 AMPP 1 2 1 No No 1 < x = 2
1775480_at YLR438W.S1 L-ornithine transaminase (OTAse), catalyzes the second step of arginine degradation, expression is dually-regulated by allophanate induction and a specific arginine induction process; not nitrogen catabolite repression sensitive 1.75181970453361 3690.48718261719 2869.48181152344 CAR2 6527 // arginine catabolism // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4587 // ornithine-oxo-acid transaminase activity // traceable author statement 2979.267578125 3746.35131835938 3634.623046875 2759.69604492188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR438W /GEN=CAR2 /DB_XREF=GI:6323470 /SEG=NC_001144:+1012497,1013771 /DEF=ornithine aminotransferase /NOTE=Car2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: ornithine-oxo-acid transaminase activity [goid GO:0004587] [evidence TAS] [pmid 10809695]; go_process: arginine catabolism [goid GO:0006527] [evidence TAS] [pmid 10809695] --- --- --- --- --- --- S0004430 // CAR2 SGDID:S0004430, Chr XII from 1012497-1013771, Verified ORF // sgd // 11 // --- /// GENSCAN00000018152 // cdna:Genscan chromosome:SGD1:XII:1012497:1013771:1 // ensembl // 11 // --- /// GENEFINDER00000024700 // cdna:GeneFinder chromosome:SGD1:XII:1012497:1013771:1 // ensembl // 11 // --- /// YLR438W // cdna:known chromosome:SGD1:XII:1012497:1013771:1 gene:YLR438W // ensembl // 11 // --- --- No cerevisiae_gene 1.75181970453361 1.25747393281041 -1.02944811381 1.21997200706707 -1.07956366557366 Max fold change below threshold 4 1.75181970453361 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776139_at YOR131C.S1 Hypothetical protein 1.75113138189535 688.173950195313 1141.0703125 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1102.05236816406 629.337341308594 747.010559082031 1180.08825683594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR131C /GEN=ORT1 /DB_XREF=GI:6324705 /SEG=NC_001147:-572182,572838 /DEF=Hypothetical ORF /NOTE=Yor131cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005657 // YOR131C SGDID:S0005657, Chr XV from 572838-572182, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022573 // cdna:GeneFinder chromosome:SGD1:XV:572161:572736:-1 // ensembl // 11 // --- /// YOR131C // cdna:known chromosome:SGD1:XV:572182:572838:-1 gene:YOR131C // ensembl // 11 // --- --- No cerevisiae_gene -1.2651742032921 -1.75113138189535 1.22849103119369 -1.47528352145159 1.07080960118245 Max fold change below threshold 4 1.75113138189535 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778414_at YGR246C.S1 TFIIIB B-related factor, one of three subunits of RNA polymerase III transcription initiation factor TFIIIB, binds TFIIIC and TBP and recruits RNA pol III to promoters, amino-terminal half is homologous to TFIIB 1.75112019510187 658.968597412109 587.699569702148 BRF1 6384 // transcription initiation from RNA polymerase III promoter // traceable author statement 126 // transcription factor TFIIIB complex // traceable author statement 3709 // RNA polymerase III transcription factor activity // traceable author statement 484.184661865234 470.071655273438 847.865539550781 691.214477539063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR246C /GEN=BRF1 /DB_XREF=GI:6321685 /SEG=NC_001139:-982486,984276 /DEF=RNA polymerase III transcription factor with homology to TFIIB /NOTE=Brf1p; go_component: transcription factor TFIIIB complex [goid GO:0000126] [evidence TAS] [pmid 9585500]; go_function: RNA polymerase III transcription factor activity [goid GO:0003709] [evidence TAS] [pmid 9585500]; go_process: transcription initiation from Pol III promoter [goid GO:0006384] [evidence TAS] [pmid 9585500] --- --- --- --- --- --- S0003478 // BRF1 SGDID:S0003478, Chr VII from 984277-982487, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021607 // cdna:GeneFinder chromosome:SGD1:VII:979770:984277:-1 // ensembl // 10 // --- /// GENSCAN00000019529 // cdna:Genscan chromosome:SGD1:VII:982487:984277:-1 // ensembl // 11 // --- /// YGR246C // cdna:known chromosome:SGD1:VII:982487:984277:-1 gene:YGR246C // ensembl // 11 // --- --- No cerevisiae_gene 1.11808300678637 -1.03002309633749 1.38775374370587 1.75112019510187 1.42758441557459 Max fold change below threshold 4 1.75112019510187 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771648_at YML032C.S1 Protein that stimulates strand exchange by facilitating Rad51p binding to single-stranded DNA; anneals complementary single-stranded DNA; involved in the repair of double-strand breaks in DNA during vegetative growth and meiosis 1.75046249988685 643.949661254883 804.147979736328 RAD52 707 // meiotic DNA recombinase assembly // traceable author statement /// 722 // telomerase-independent telomere maintenance // inferred from mutant phenotype /// 727 // double-strand break repair via break-induced replication // traceable author statement /// 730 // DNA recombinase assembly // inferred from direct assay /// 730 // DNA recombinase assembly // traceable author statement /// 45002 // double-strand break repair via single-strand annealing // inferred from genetic interaction /// 45003 // double-strand break repair via synthesis-dependent strand annealing // traceable author statement 228 // nuclear chromosome // inferred from direct assay /// 5634 // nucleus // inferred from direct assay 150 // recombinase activity // inferred from direct assay /// 739 // DNA strand annealing activity // inferred from direct assay 755.386108398438 487.019500732422 800.879821777344 852.909851074219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML032C /GEN=RAD52 /DB_XREF=GI:27808713 /SEG=NC_001145:-212515,213930 /DEF=Protein that stimulates strand exchange by facilitating Rad51p binding to single-stranded DNA; anneals complementary single-stranded DNA; involved in the repair of double-strand breaks in DNA during vegetative growth and meiosis /NOTE=Rad52p; go_component: nuclear chromosome [goid GO:0000228] [evidence IDA] [pmid 12766777]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11459964]; go_function: DNA strand annealing activity [goid GO:0000739] [evidence IDA] [pmid 9619627]; go_process: DNA recombinase assembly [goid GO:0000730] [evidence IDA,TAS] [pmid 11459983]; go_process: double-strand break repair via break-induced replication [goid GO:0000727] [evidence TAS] [pmid 11459961]; go_process: double-strand break repair via single-strand annealing [goid GO:0045002] [evidence IGI] [pmid 11606529]; go_process: double-strand break repair via synthesis-dependent strand annealing [goid GO:0045003] [evidence TAS] [pmid 10357855]; go_process: meiotic DNA recombinase assembly [goid GO:0000707] [evidence TAS] [pmid 11459983]; go_process: telomerase-independent telomere maintenance [goid GO:0000722] [evidence IMP] [pmid 11238918] --- --- --- --- --- --- S0004494 // RAD52 SGDID:S0004494, Chr XIII from 213930-212515, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018690 // cdna:Genscan chromosome:SGD1:XIII:212515:214029:-1 // ensembl // 11 // --- /// GENEFINDER00000021976 // cdna:GeneFinder chromosome:SGD1:XIII:212515:213990:-1 // ensembl // 11 // --- /// YML032C // cdna:known chromosome:SGD1:XIII:212515:213930:-1 gene:YML032C // ensembl // 11 // --- --- No cerevisiae_gene -1.75046249988685 -1.55103873102088 1.08087080686664 1.0602257744392 1.12910449582208 Max fold change below threshold 4 1.75046249988685 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774473_at YOL039W.S1 Ribosomal protein P2 alpha, a component of the ribosomal stalk, which is involved in the interaction between translational elongation factors and the ribosome; regulates the accumulation of P1 (Rpp1Ap and Rpp1Bp) in the cytoplasm 1.74992039111915 3466.52038574219 5308.630859375 RPP2A 6412 // protein biosynthesis // traceable author statement /// 6414 // translational elongation // inferred from sequence similarity 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 5956.89306640625 3528.94702148438 3404.09375 4660.36865234375 0.000732421991415322 0.00195312988944352 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL039W /GEN=RPP2A /DB_XREF=GI:6324534 /SEG=NC_001147:+254295,254615 /DEF=Homology to rat P2, human P2, and E.coli L12eIB /NOTE=Rpp2ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9559554]; go_process: translational elongation [goid GO:0006414] [evidence ISS] [pmid 9175862] --- --- --- --- --- --- S0005399 // RPP2A SGDID:S0005399, Chr XV from 254295-254615, Verified ORF // sgd // 11 // --- /// X06958 // Yeast mRNA for ribosomal protein A2. // gb // 11 // --- /// GENEFINDER00000022600 // cdna:GeneFinder chromosome:SGD1:XV:254295:254615:1 // ensembl // 11 // --- /// YOL039W // cdna:known chromosome:SGD1:XV:254295:254615:1 gene:YOL039W // ensembl // 11 // --- --- No cerevisiae_gene -1.04701156657075 -1.68800864114435 -1.40820880111671 -1.74992039111915 -1.27820211463539 Max fold change below threshold 4 1.74992039111915 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770553_at SPBC16H5.11c.S1 --- 1.74966278476694 --- --- --- --- 1.40838146209717 1.32204532623291 1.03365504741669 0.804944515228271 0.753906011581421 0.994140982627869 0.981445014476776 0.943848013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16H5.11c /GEN=skb1 /DEF=methyltransferase (PMID 11278267) --- --- --- --- --- --- SPBC16H5.11c // |skb1|rmt5|arginine N-methyltransferase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.41894445711535 -1.06530497415718 1.02848161051466 -1.36252559847407 -1.74966278476694 Max fold change below threshold 0 1.74966278476694 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770020_at YGL211W.S1 Protein with a role in urmylation and in invasive and pseudohyphal growth; inhibits replication of Brome mosaic virus in S. cerevisiae, which is a model system for studying replication of positive-strand RNA viruses in their natural hosts 1.74956646835885 389.787353515625 383.923370361328 NCS6 --- 5739 // mitochondrion // inferred from direct assay --- 361.133514404297 368.12255859375 411.4521484375 406.713226318359 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL211W /GEN=NCS6 /DB_XREF=GI:6321227 /SEG=NC_001139:+92515,93096 /DEF=has a role in invasive growth /NOTE=Ncs6p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 6.30000019073486 /// scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 7.80000019073486 --- S0003179 // NCS6 SGDID:S0003179, Chr VII from 92516-93595, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000019189 // cdna:Genscan chromosome:SGD1:VII:92516:93595:1 // ensembl // 10 // --- /// GENEFINDER00000021555 // cdna:GeneFinder chromosome:SGD1:VII:92516:93595:1 // ensembl // 10 // --- /// YGL211W // cdna:known chromosome:SGD1:VII:92516:93595:1 gene:YGL211W // ensembl // 10 // --- --- No cerevisiae_gene 1.74956646835885 1.01935307555429 1.2077666324168 1.13933526528604 1.12621291045016 Max fold change below threshold 4 1.74956646835885 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778316_at YOL049W.S1 Glutathione synthetase, catalyzes the ATP-dependent synthesis of glutathione (GSH) from gamma-glutamylcysteine and glycine; induced by oxidative stress and heat shock 1.74946661159673 515.041854858398 736.887298583984 GSH2 6750 // glutathione biosynthesis // traceable author statement 5622 // intracellular // traceable author statement 4363 // glutathione synthase activity // inferred from direct assay 678.768859863281 387.986175537109 642.097534179688 795.005737304688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL049W /GEN=GSH2 /DB_XREF=GI:6324524 /SEG=NC_001147:+238617,240092 /DEF=Glutathione synthetase, catalyzes the ATP-dependent synthesis of glutathione (GSH) from gamma-glutamylcysteine and glycine; induced by oxidative stress and heat shock /NOTE=Gsh2p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 12406228]; go_function: glutathione synthase activity [goid GO:0004363] [evidence IDA] [pmid 9512666]; go_process: glutathione biosynthesis [goid GO:0006750] [evidence TAS] [pmid 9512666] --- --- --- --- --- --- S0005409 // GSH2 SGDID:S0005409, Chr XV from 238617-240092, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022732 // cdna:GeneFinder chromosome:SGD1:XV:238617:240092:1 // ensembl // 11 // --- /// GENSCAN00000017430 // cdna:Genscan chromosome:SGD1:XV:238701:240092:1 // ensembl // 11 // --- /// YOL049W // cdna:known chromosome:SGD1:XV:238617:240092:1 gene:YOL049W // ensembl // 11 // --- --- No cerevisiae_gene -1.24023000734707 -1.74946661159673 1.06092897287812 -1.05711176843319 1.17124662652441 Max fold change below threshold 4 1.74946661159673 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775910_at YDR116C.S1 Mitochondrial ribosomal protein of the large subunit 1.74935455202426 542.633193969727 820.997283935547 MRPL1 6412 // protein biosynthesis // inferred from curator /// 9060 // aerobic respiration // inferred from expression pattern /// 9060 // aerobic respiration // inferred from mutant phenotype 5762 // mitochondrial large ribosomal subunit // inferred from sequence similarity /// 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // inferred from sequence similarity /// 3735 // structural constituent of ribosome // inferred from physical interaction 788.304016113281 450.625640869141 634.640747070313 853.690551757813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR116C /GEN=MRPL1 /DB_XREF=GI:6320321 /SEG=NC_001136:-682718,683575 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl1p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence ISS] [pmid 10929718]; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence ISS] [pmid 10929718]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IPI] [pmid 12392552]; go_process: aerobic respiration [goid GO:0009060] [evidence IEP,IMP] [pmid 10929718]; go_process: protein biosynthesis [goid GO:0006412] [evidence IC] [pmid 12392552] --- --- --- --- --- --- S0002523 // MRPL1 SGDID:S0002523, Chr IV from 683576-682719, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023939 // cdna:GeneFinder chromosome:SGD1:IV:682719:683576:-1 // ensembl // 10 // --- /// GENSCAN00000025181 // cdna:Genscan chromosome:SGD1:IV:682719:683468:-1 // ensembl // 10 // --- /// YDR116C // cdna:known chromosome:SGD1:IV:682719:683576:-1 gene:YDR116C // ensembl // 10 // --- --- No cerevisiae_gene -1.22751676819011 -1.74935455202426 1.4676031795105 -1.24212638370972 1.08294583600743 Max fold change below threshold 4 1.74935455202426 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771007_at YER176W.S1 DNA dependent ATPase/DNA helicase belonging to the Dna2p- and Nam7p-like family of helicases that is involved in modulating translation termination; interacts with the translation termination factors, localized to polysomes 1.74900500889866 338.882049560547 599.563659667969 ECM32 6449 // regulation of translational termination // inferred from mutant phenotype 5844 // polysome // inferred from direct assay 3678 // DNA helicase activity // inferred from direct assay /// 3724 // RNA helicase activity // inferred from sequence similarity 566.883972167969 324.117980957031 353.646118164063 632.243347167969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER176W /GEN=ECM32 /DB_XREF=GI:6321024 /SEG=NC_001137:+541685,545050 /DEF=DNA dependent ATPase/DNA helicase belonging to the Dna2p- and Nam7p-like family of helicases that is involved in modulating translation termination; interacts with the translation termination factors, localized to polysomes /NOTE=Ecm32p; go_component: polysome [goid GO:0005844] [evidence IDA] [pmid 10836794]; go_function: DNA helicase activity [goid GO:0003678] [evidence IDA] [pmid 9434351]; go_function: RNA helicase activity [goid GO:0003724] [evidence ISS] [pmid 10836794]; go_process: regulation of translational termination [goid GO:0006449] [evidence IMP] [pmid 10836794] --- --- --- --- --- --- S0000978 // ECM32 SGDID:S0000978, Chr V from 541685-545050, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019696 // cdna:GeneFinder chromosome:SGD1:V:541685:545499:1 // ensembl // 9 // --- /// GENSCAN00000016955 // cdna:Genscan chromosome:SGD1:V:543527:545050:1 // ensembl // 11 // --- /// YER176W // cdna:known chromosome:SGD1:V:541685:545050:1 gene:YER176W // ensembl // 11 // --- --- No cerevisiae_gene 1.0066763732787 -1.74900500889866 -1.30029025376642 -1.6029695875383 1.11529585983891 Max fold change below threshold 4 1.74900500889866 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774234_at YDR183W.S1 Protein with a possible role in folding of beta-tubulin; has similarity to phosducins, which are GTPase inhibitors 1.74881851706414 164.392169952393 223.242309570313 PLP1 7025 // beta-tubulin folding // inferred from genetic interaction /// 7329 // positive regulation of transcription from RNA polymerase II promoter by pheromones // inferred from mutant phenotype /// 7329 // positive regulation of transcription from RNA polymerase II promoter by pheromones // inferred from physical interaction 5737 // cytoplasm // inferred from physical interaction 5095 // GTPase inhibitor activity // inferred from sequence similarity 197.239822387695 112.784614562988 215.999725341797 249.24479675293 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR183W /GEN=PLP1 /DB_XREF=GI:6320389 /SEG=NC_001136:+829578,830270 /DEF=Protein with a possible role in folding of beta-tubulin; has similarity to phosducins, which are GTPase inhibitors /NOTE=Plp1p; go_component: cytoplasm [goid GO:0005737] [evidence IPI] [pmid 10749875]; go_function: GTPase inhibitor activity [goid GO:0005095] [evidence ISS] [pmid 10749875]; go_process: beta-tubulin folding [goid GO:0007025] [evidence IGI] [pmid 14573467]; go_process: positive regulation of transcription from Pol II promoter by pheromones [goid GO:0007329] [evidence IMP,IPI] [pmid 10749875] --- --- --- --- --- --- S0002591 // PLP1 SGDID:S0002591, Chr IV from 829580-830272, Verified ORF // sgd // 11 // --- /// GENSCAN00000025237 // cdna:Genscan chromosome:SGD1:IV:829580:830272:1 // ensembl // 11 // --- /// YDR183W // cdna:known chromosome:SGD1:IV:829580:830272:1 gene:YDR183W // ensembl // 11 // --- --- No cerevisiae_gene -1.02197195075835 -1.74881851706414 1.23991620500485 1.09511214686265 1.26366366454647 Max fold change below threshold 4 1.74881851706414 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778439_at YER117W.S1 Protein component of the large (60S) ribosomal subunit, identical to Rpl23Ap and has similarity to E. coli L14 and rat L23 ribosomal proteins 1.74877298830383 2438.07653808594 2824.8466796875 RPL23B 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3095.81127929688 2713.71728515625 2162.43579101563 2553.88208007813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER117W /GEN=RPL23B /DB_XREF=GI:6320963 /SEG=NC_001137:+396765,397649 /DEF=Protein component of the large (60S) ribosomal subunit, identical to Rpl23Ap and has similarity to E. coli L14 and rat L23 ribosomal proteins /NOTE=Rpl23bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0000919 // RPL23B SGDID:S0000919, Chr V from 396765-396806,397278-397649, intron sequence removed, Verified ORF // sgd // 11 // --- /// YER117W // cdna:known chromosome:SGD1:V:396765:397649:1 gene:YER117W // ensembl // 11 // --- GENSCAN00000016898 // ensembl // 7 // Cross Hyb Matching Probes /// GENEFINDER00000019659 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 1.14527512958341 -1.14080095823933 -1.74877298830383 -1.43163153891514 -1.21219820736679 Max fold change below threshold 4 1.74877298830383 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776442_at SPAC24H6.05.S1 --- 1.74852606195376 --- --- --- --- 3.13802933692932 2.4477117061615 4.32578325271606 5.48692607879639 0.194580003619194 0.780517995357513 0.567627012729645 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24H6.05 /GEN=cdc25 /DEF=serinethreonine protein phosphatase --- --- --- --- --- --- SPAC24H6.05 // |cdc25|sal2|serine/threonine protein phosphatase Cdc25p|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.10024029684259 -1.28202570957606 -1.34548718910169 1.37850312672634 1.74852606195376 Max fold change below threshold 3 1.74852606195376 Max fold change below threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1775926_at YJL179W.S1 Subunit of heterohexameric prefoldin, which binds cytosolic chaperonin and transfers target proteins to it; involved in the biogenesis of actin and of alpha- and gamma-tubulin 1.74852007946902 178.402519226074 244.27229309082 PFD1 6457 // protein folding // inferred from mutant phenotype /// 6457 // protein folding // inferred from sequence similarity /// 7010 // cytoskeleton organization and biogenesis // inferred from mutant phenotype 16272 // prefoldin complex // inferred from mutant phenotype /// 16272 // prefoldin complex // inferred from sequence similarity 51082 // unfolded protein binding // inferred from mutant phenotype /// 51082 // unfolded protein binding // inferred from sequence similarity 238.897933959961 211.796447753906 145.008590698242 249.64665222168 0.000244141003349796 0.00195312988944352 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL179W /GEN=PFD1 /DB_XREF=GI:6322282 /SEG=NC_001142:+88785,89114 /DEF=Prefoldin subunit 1; putative homolog of subunit 1 of bovine prefoldin, a chaperone comprised of six subunits /NOTE=Pfd1p; go_component: prefoldin complex [goid GO:0016272] [evidence IMP,ISS] [pmid 9630229]; go_function: chaperone activity [goid GO:0003754] [evidence IMP,ISS] [pmid 9630229]; go_process: cytoskeleton organization and biogenesis [goid GO:0007010] [evidence IMP] [pmid 9630229]; go_process: protein folding [goid GO:0006457] [evidence IMP,ISS] [pmid 9630229] --- --- --- --- scop // a.2.5.Prefoldin // All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin // 0.430000007152557 --- S0003715 // PFD1 SGDID:S0003715, Chr X from 88785-89114, Verified ORF // sgd // 11 // --- /// YJL179W // cdna:known chromosome:SGD1:X:88785:89114:1 gene:YJL179W // ensembl // 11 // --- --- No cerevisiae_gene 1.74852007946902 -1.12796006020623 -1.00232103896503 -1.64747435175823 1.04499293101262 Max fold change below threshold 4 1.74852007946902 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778512_at YBR162W-A.S1 Protein that participates in secretory pathway 1.74834313554603 2834.8447265625 1876.73626708984 YSY6 9306 // protein secretion // inferred from sequence similarity 5783 // endoplasmic reticulum // inferred from direct assay --- 1956.71069335938 3421.00170898438 2248.68774414063 1796.76184082031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR162W-A /GEN=YSY6 /DB_XREF=GI:6319639 /SEG=NC_001134:+565188,565385 /DEF=Protein that participates in secretory pathway /NOTE=Ysy6p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein secretion [goid GO:0009306] [evidence ISS] [pmid 10469658] --- --- --- --- --- S0002158 // span:44-63 // numtm:1 S0002158 // YSY6 SGDID:S0002158, Chr II from 565226-565423, Verified ORF // sgd // 11 // --- /// YBR162W-A // cdna:known chromosome:SGD1:II:565226:565423:1 gene:YBR162W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.12404614178944 1.74834313554603 -1.09409644683251 1.14921830384643 -1.08902061970886 Max fold change below threshold 4 1.74834313554603 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770164_at SPAC1805.06c.S1 --- 1.74831788814117 --- --- --- --- 9.72153854370117 6.0646014213562 5.56050968170166 7.46014785766602 0.0676269978284836 0.194580003619194 0.0561522990465164 0.111571997404099 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1805.06c /GEN=hem2 /DEF=delta-aminolevulinic acid dehydratase --- --- --- --- --- --- U83568 // Schizosaccharomyces pombe delta-aminolevulinic acid dehydratase homolog mRNA, partial cds. // gb // 11 // --- /// SPAC1805.06c // |hem2||porphobilinogen synthase Hem2 |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.74161784950489 -1.60299710867515 -1.26402210562967 -1.74831788814117 -1.30312947265668 Max fold change below threshold 4 1.74831788814117 Max fold change below threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1774891_at YLR102C.S1 Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition 1.74810234977507 290.72737121582 296.95442199707 APC9 22 // mitotic spindle elongation // traceable author statement /// 70 // mitotic sister chromatid segregation // traceable author statement /// 7091 // mitotic metaphase/anaphase transition // traceable author statement /// 8054 // cyclin catabolism // traceable author statement /// 16567 // protein ubiquitination // inferred from physical interaction /// 31145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from physical interaction 5680 // anaphase-promoting complex // traceable author statement 4842 // ubiquitin-protein ligase activity // traceable author statement /// 5515 // protein binding // traceable author statement 288.069641113281 164.789916992188 416.664825439453 305.839202880859 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR102C /GEN=APC9 /DB_XREF=GI:6323131 /SEG=NC_001144:-342971,343768 /DEF=required for structural stability and the incorporation of Cdc27p into the APC. /NOTE=Apc9p; go_component: anaphase-promoting complex [goid GO:0005680] [evidence TAS] [pmid 10465783]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 10465783]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 10465783]; go_process: cyclin catabolism [goid GO:0008054] [evidence TAS] [pmid 10465783]; go_process: mitotic metaphase/anaphase transition [goid GO:0007091] [evidence TAS] [pmid 10465783]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence TAS] [pmid 10465783]; go_process: mitotic spindle elongation [goid GO:0000022] [evidence TAS] [pmid 10465783]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10465783] --- --- --- --- --- --- S0004092 // APC9 SGDID:S0004092, Chr XII from 343768-342971, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017899 // cdna:Genscan chromosome:SGD1:XII:342971:343768:-1 // ensembl // 11 // --- /// YLR102C // cdna:known chromosome:SGD1:XII:342971:343768:-1 gene:YLR102C // ensembl // 11 // --- --- No cerevisiae_gene -1.40352933252309 -1.74810234977507 1.56380382110598 1.44640311220995 1.06168495124618 Max fold change below threshold 4 1.74810234977507 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770949_at YMR043W.S1 Transcription factor involved in cell-type-specific transcription and pheromone response; plays a central role in the formation of both repressor and activator complexes 1.74804364620706 1058.80526733398 694.639923095703 MCM1 6270 // DNA replication initiation // traceable author statement /// 6357 // regulation of transcription from RNA polymerase II promoter // traceable author statement 790 // nuclear chromatin // inferred from direct assay /// 5634 // nucleus // traceable author statement /// 5634 // nucleus // inferred from physical interaction 3677 // DNA binding // traceable author statement /// 3688 // DNA replication origin binding // inferred from direct assay /// 3702 // RNA polymerase II transcription factor activity // traceable author statement 659.292907714844 965.137756347656 1152.47277832031 729.986938476563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR043W /GEN=MCM1 /DB_XREF=GI:6323686 /SEG=NC_001145:+353870,354730 /DEF=Involved in cell-type-specific transcription and pheromone response /NOTE=Mcm1p; go_component: nuclear chromatin [goid GO:0000790] [evidence IDA] [pmid 12473677]; go_component: nucleus [goid GO:0005634] [evidence IPI,TAS] [pmid 7744019]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 12138185]; go_function: DNA replication origin binding [goid GO:0003688] [evidence IDA] [pmid 12473677]; go_function: RNA polymerase II transcription factor activity [goid GO:0003702] [evidence TAS] [pmid 7744019]; go_process: DNA replication initiation [goid GO:0006270] [evidence TAS] [pmid 12473677]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence TAS] [pmid 7744019] --- --- --- --- --- --- S0004646 // MCM1 SGDID:S0004646, Chr XIII from 353870-354730, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021997 // cdna:GeneFinder chromosome:SGD1:XIII:353870:354730:1 // ensembl // 11 // --- /// YMR043W // cdna:known chromosome:SGD1:XIII:353870:354730:1 gene:YMR043W // ensembl // 11 // --- --- No cerevisiae_gene 1.43394833572567 1.46389828413731 1.01757559234039 1.74804364620706 1.10722704572502 Max fold change below threshold 4 1.74804364620706 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773529_at YCR037C.S1 Low-affinity inorganic phosphate (Pi) transporter, involved in activation of PHO pathway; expression is independent of Pi concentration and Pho4p activity; contains 12 membrane-spanning segments 1.74764860438427 1088.05340576172 723.385467529297 PHO87 6817 // phosphate transport // inferred from genetic interaction /// 6817 // phosphate transport // inferred from mutant phenotype /// 6817 // phosphate transport // inferred from sequence similarity 16020 // membrane // inferred from sequence similarity 5315 // inorganic phosphate transporter activity // inferred from genetic interaction /// 5315 // inorganic phosphate transporter activity // inferred from mutant phenotype /// 5315 // inorganic phosphate transporter activity // inferred from sequence similarity 692.084777832031 966.585815429688 1209.52099609375 754.686157226563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR037C /GEN=PHO87 /DB_XREF=GI:10383798 /SEG=NC_001135:-194409,197180 /DEF=Low-affinity inorganic phosphate (Pi) transporter, involved in activation of PHO pathway; expression is independent of Pi concentration and Pho4p activity; contains 12 membrane-spanning segments /NOTE=Pho87p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 8598055]; go_function: inorganic phosphate transporter activity [goid GO:0005315] [evidence IGI,IMP,ISS] [pmid 8598055]; go_process: phosphate transport [goid GO:0006817] [evidence IGI,IMP,ISS] [pmid 8598055] --- --- --- --- --- S0000633 // span:458-475,496-518,538-560,591-613,628-647,668-690,710-729,736-758,768-790,803-834,849-871,892-914 // numtm:12 S0000633 // PHO87 SGDID:S0000633, Chr III from 197180-194409, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022486 // cdna:Genscan chromosome:SGD1:III:194409:197180:-1 // ensembl // 11 // --- /// GENEFINDER00000023314 // cdna:GeneFinder chromosome:SGD1:III:194409:197180:-1 // ensembl // 11 // --- /// YCR037C // cdna:known chromosome:SGD1:III:194409:197180:-1 gene:YCR037C // ensembl // 11 // --- --- No cerevisiae_gene 1.49324554989599 1.39662920842955 1.19311265595019 1.74764860438427 1.09045333953252 Max fold change below threshold 4 1.74764860438427 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779951_at SPAC3A11.09.S1 --- 1.74757790818157 --- --- --- --- 3.80161809921265 4.61647510528564 2.71472525596619 2.17536401748657 0.24609400331974 0.303710997104645 0.5 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3A11.09 /DEF=sodiumhydrogen exchanger family --- --- --- --- --- --- SPAC3A11.09 // |||sodium/hydrogen exchanger family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.70318734069599 1.21434478288121 1.73390478429104 -1.40036937102853 -1.74757790818157 Max fold change below threshold 3 1.74757790818157 Max fold change below threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1772150_at SPBC2F12.05c.S1 --- 1.74748613889107 --- --- --- --- 3.81237101554871 6.66206550598145 5.9060754776001 4.20450305938721 0.665526986122131 0.466064006090164 0.567627012729645 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2F12.05c /DEF=involved in ergosterol biosynthesis (predicted) --- --- --- --- --- --- SPBC2F12.05c // |||ankyrin repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No 1.63376704156403 1.74748613889107 -1.29725849393255 1.54918696357523 1.10285778646391 Max fold change below threshold 4 1.74748613889107 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774923_at YDL207W.S1 Cytoplasmic nucleoporin required for polyadenylated RNA export but not for protein import; component of Nup82p nuclear pore subcomplex; contains a nuclear export signal 1.74733896672163 517.232345581055 850.311553955078 GLE1 16973 // poly(A)+ mRNA-nucleus export // inferred from mutant phenotype 5643 // nuclear pore // traceable author statement /// 5643 // nuclear pore // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 835.382507324219 556.376281738281 478.088409423828 865.240600585938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL207W /GEN=GLE1 /DB_XREF=GI:6319994 /SEG=NC_001136:+88249,89865 /DEF=Polyadenylated-RNA-export factor; the HIV Rev protein may mimic function of Gle1 /NOTE=Gle1p; go_component: nuclear pore [goid GO:0005643] [evidence TAS] [pmid 11343909]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: poly(A)+ mRNA-nucleus export [goid GO:0016973] [evidence IMP] [pmid 8898365] --- --- --- --- --- --- S0002366 // GLE1 SGDID:S0002366, Chr IV from 88249-89865, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023413 // cdna:GeneFinder chromosome:SGD1:IV:88249:89865:1 // ensembl // 11 // --- /// YDL207W // cdna:known chromosome:SGD1:IV:88249:89865:1 gene:YDL207W // ensembl // 11 // --- --- No cerevisiae_gene -1.05350757211307 -1.50147038028695 -1.22099259781032 -1.74733896672163 1.0357418224585 Max fold change below threshold 4 1.74733896672163 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772146_at YDR352W.S1 Hypothetical protein 1.74702261569315 287.084197998047 206.84497833252 --- --- 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay --- 188.715377807617 244.478363037109 329.690032958984 224.974578857422 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR352W /GEN=SBE2 /DB_XREF=GI:6320559 /SEG=NC_001136:+1181790,1182743 /DEF=Hypothetical ORF /NOTE=Ydr352wp; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002760 // span:6-28,40-62,72-94,215-237,257-279 // numtm:5 S0002760 // YDR352W SGDID:S0002760, Chr IV from 1181792-1182745, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025378 // cdna:Genscan chromosome:SGD1:IV:1182170:1182745:1 // ensembl // 11 // --- /// YDR352W // cdna:known chromosome:SGD1:IV:1181792:1182745:1 gene:YDR352W // ensembl // 11 // --- --- No cerevisiae_gene 1.45583571205235 1.2954872352074 1.24218535920847 1.74702261569315 1.19213697087668 Max fold change below threshold 4 1.74702261569315 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780009_at YKL173W.S1 involved in splicing; U5 snRNP-specific protein related to EF-2 1.74661929822393 360.92431640625 549.879287719727 SNU114 398 // nuclear mRNA splicing, via spliceosome // traceable author statement 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 3924 // GTPase activity // inferred from mutant phenotype /// 3924 // GTPase activity // inferred from sequence similarity /// 4004 // ATP-dependent RNA helicase activity // traceable author statement /// 5525 // GTP binding // inferred from direct assay /// 5525 // GTP binding // inferred from sequence similarity /// 31202 // RNA splicing factor activity, transesterification mechanism // traceable author statement 504.483917236328 288.834503173828 433.014129638672 595.274658203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL173W /GEN=SNU114 /DB_XREF=GI:6322675 /SEG=NC_001143:+122522,125548 /DEF=involved in splicing /NOTE=Snu114p; go_component: snRNP U4 [goid GO:0005687] [evidence IDA] [pmid 10377396]; go_component: snRNP U5 [goid GO:0005682] [evidence IDA] [pmid 10377396]; go_component: snRNP U6 [goid GO:0005688] [evidence IDA] [pmid 10377396]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 9476892]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence TAS] [pmid 9476892]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence TAS] [pmid 9476892] --- --- --- --- --- --- S0001656 // SNU114 SGDID:S0001656, Chr XI from 122522-125548, Verified ORF // sgd // 11 // --- /// GENSCAN00000018291 // cdna:Genscan chromosome:SGD1:XI:122522:125548:1 // ensembl // 11 // --- /// GENEFINDER00000022962 // cdna:GeneFinder chromosome:SGD1:XI:122522:125548:1 // ensembl // 11 // --- /// YKL173W // cdna:known chromosome:SGD1:XI:122522:125548:1 gene:YKL173W // ensembl // 11 // --- --- No cerevisiae_gene -1.43410903890772 -1.74661929822393 1.49851070075977 -1.16505186021827 1.17996756262156 Max fold change below threshold 4 1.74661929822393 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770084_at YIL009W.S1 Long chain fatty acyl-CoA synthetase, has a preference for C16 and C18 fatty acids; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery 1.74661516012864 237.005249023438 365.460998535156 FAA3 6499 // N-terminal protein myristoylation // inferred from genetic interaction /// 6499 // N-terminal protein myristoylation // inferred from mutant phenotype /// 6629 // lipid metabolism // inferred from genetic interaction /// 6629 // lipid metabolism // inferred from mutant phenotype --- 4467 // long-chain-fatty-acid-CoA ligase activity // inferred from direct assay 352.655395507813 201.907897949219 272.102600097656 378.2666015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL009W /GEN=FAA3 /DB_XREF=GI:6322182 /SEG=NC_001141:+339341,341425 /DEF=Long chain fatty acyl-CoA synthetase, has a preference for C16 and C18 fatty acids; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery /NOTE=Faa3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: long-chain-fatty-acid-CoA ligase activity [goid GO:0004467] [evidence IDA] [pmid 8206942]; go_process: N-terminal protein myristoylation [goid GO:0006499] [evidence IGI,IMP] [pmid 7962057]; go_process: lipid metabolism [goid GO:0006629] [evidence IGI,IMP] [pmid 7962057] --- --- --- ec // AC2L_HUMAN // (Q9NUB1) Acetyl-coenzyme A synthetase 2-like, mitochondrial precursor (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acetyl-CoA synthetase 2) // 5.0E-66 --- --- S0001271 // FAA3 SGDID:S0001271, Chr IX from 339341-341425, Verified ORF // sgd // 11 // --- /// GENSCAN00000016468 // cdna:Genscan chromosome:SGD1:IX:339341:341425:1 // ensembl // 11 // --- /// GENEFINDER00000019050 // cdna:GeneFinder chromosome:SGD1:IX:339341:341425:1 // ensembl // 11 // --- /// YIL009W // cdna:known chromosome:SGD1:IX:339341:341425:1 gene:YIL009W // ensembl // 11 // --- --- No cerevisiae_gene 1.10401925888029 -1.74661516012864 1.02101661051599 -1.29603831562523 1.07262388830832 Max fold change below threshold 4 1.74661516012864 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779520_at YDL198C.S1 Mitochondrial GTP/GDP transporter, essential for mitochondrial genome maintenance; has a role in mitochondrial iron transport; member of the mitochondrial carrier family; (putative) mitochondrial carrier protein 1.74660373133969 847.019683837891 1086.76043701172 GGC1 2 // mitochondrial genome maintenance // inferred from genetic interaction /// 2 // mitochondrial genome maintenance // inferred from mutant phenotype /// 1408 // guanine nucleotide transport // inferred from direct assay /// 6879 // iron ion homeostasis // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from sequence similarity 1409 // guanine nucleotide transporter activity // inferred from direct assay 1089.85681152344 705.128662109375 988.910705566406 1083.6640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL198C /GEN=GGC1 /DB_XREF=GI:6320003 /SEG=NC_001136:-103650,104552 /DEF=Mitochondrial GTP/GDP transporter, essential for mitochondrial genome maintenance; has a role in mitochondrial iron transport; member of the mitochondrial carrier family /NOTE=Ggc1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence ISS] [pmid 10930523]; go_function: purine nucleotide transporter activity [goid GO:0015216] [evidence IDA] [pmid 14998997]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IMP] [pmid 14629196]; go_process: mitochondrial genome maintenance [goid GO:0000002] [evidence IMP] [pmid 14998997]; go_process: mitochondrial genome maintenance [goid GO:0000002] [evidence IGI] [pmid 8905928]; go_process: purine nucleotide transport [goid GO:0015865] [evidence IDA] [pmid 14998997] --- --- --- --- --- --- S0002357 // GGC1 SGDID:S0002357, Chr IV from 104552-103650, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023852 // cdna:GeneFinder chromosome:SGD1:IV:103650:104552:-1 // ensembl // 11 // --- /// GENSCAN00000024955 // cdna:Genscan chromosome:SGD1:IV:103650:104552:-1 // ensembl // 11 // --- /// YDL198C // cdna:known chromosome:SGD1:IV:103650:104552:-1 gene:YDL198C // ensembl // 11 // --- --- No cerevisiae_gene 1.74660373133969 -1.54561411283887 -1.12763983504171 -1.10207807983959 -1.00571463910056 Max fold change below threshold 4 1.74660373133969 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776885_at YHR084W.S1 Transcription factor that is activated by a MAP kinase signaling cascade, activates genes involved in mating or pseudohyphal/invasive growth pathways; cooperates with Tec1p transcription factor to regulate genes specific for invasive growth 1.74635737654773 356.914169311523 625.269500732422 STE12 747 // conjugation with cellular fusion // traceable author statement /// 1403 // invasive growth (sensu Saccharomyces) // inferred from mutant phenotype /// 7124 // pseudohyphal growth // inferred from mutant phenotype /// 7329 // positive regulation of transcription from RNA polymerase II promoter by pheromones // inferred from mutant phenotype 5634 // nucleus // traceable author statement 3700 // transcription factor activity // inferred from physical interaction 601.791564941406 344.598175048828 369.230163574219 648.747436523438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR084W /GEN=STE12 /DB_XREF=GI:6321876 /SEG=NC_001140:+274175,276241 /DEF=Involved in pheromone and pseudohyphal growth signal transduction pathways /NOTE=Ste12p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 7834739]; go_function: transcription factor activity [goid GO:0003700] [evidence IPI] [pmid 2558054]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence TAS] [pmid 10704467]; go_process: invasive growth (sensu Saccharomyces) [goid GO:0001403] [evidence IMP] [pmid 8001818]; go_process: positive regulation of transcription from Pol II promoter by pheromones [goid GO:0007329] [evidence IMP] [pmid 7834739]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 8259520] --- --- --- --- --- --- S0001126 // STE12 SGDID:S0001126, Chr VIII from 274175-276241, Verified ORF // sgd // 11 // --- /// GENSCAN00000016627 // cdna:Genscan chromosome:SGD1:VIII:274175:276241:1 // ensembl // 11 // --- /// GENEFINDER00000020291 // cdna:GeneFinder chromosome:SGD1:VIII:274460:276241:1 // ensembl // 11 // --- /// YHR084W // cdna:known chromosome:SGD1:VIII:274175:276241:1 gene:YHR084W // ensembl // 11 // --- --- No cerevisiae_gene 1.28306530599702 -1.74635737654773 -1.20024947798187 -1.62985482853283 1.07802680249698 Max fold change below threshold 4 1.74635737654773 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777299_at YGL075C.S1 Essential membrane protein localized at the nuclear envelope and spindle pole body (SPB), required for insertion of the newly duplicated SPB into the nuclear envelope; potentially phosphorylated by Cdc28p 1.74631061670909 142.999095916748 145.06485748291 MPS2 90 // mitotic anaphase // traceable author statement /// 7103 // spindle pole body duplication in nuclear envelope // traceable author statement 5635 // nuclear membrane // inferred from direct assay /// 5816 // spindle pole body // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from mutant phenotype 126.870742797852 99.1568984985352 186.841293334961 163.258972167969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL075C /GEN=MPS2 /DB_XREF=GI:6321363 /SEG=NC_001139:-366926,368089 /DEF=Essential membrane protein localized at the nuclear envelope and spindle pole body (SPB), required for insertion of the newly duplicated SPB into the nuclear envelope; potentially phosphorylated by Cdc28p /NOTE=Mps2p; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 10397772]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 10397772]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IMP] [pmid 10397772]; go_process: mitotic anaphase [goid GO:0000090] [evidence TAS] [pmid 10397772]; go_process: spindle pole body duplication (sensu Saccharomyces) [goid GO:0007103] [evidence TAS] [pmid 9153752] --- --- --- --- --- --- S0003043 // MPS2 SGDID:S0003043, Chr VII from 368091-366928, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019293 // cdna:Genscan chromosome:SGD1:VII:366928:368091:-1 // ensembl // 11 // --- /// YGL075C // cdna:known chromosome:SGD1:VII:366928:368091:-1 gene:YGL075C // ensembl // 11 // --- --- No cerevisiae_gene 1.52604063622536 -1.27949486842538 1.74631061670909 1.47269015073604 1.28681340211034 Max fold change below threshold 4 1.74631061670909 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779563_at YDR070C.S1 The authentic, non-tagged protein was localized to the mitochondria 1.74588860661796 5771.45458984375 4645.64575195313 --- --- 5739 // mitochondrion // inferred from direct assay --- 5211.171875 7140.416015625 4402.4931640625 4080.11962890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR070C /GEN=DOA4 /DB_XREF=GI:6320275 /SEG=NC_001136:-588094,588375 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ydr070cp --- --- --- --- --- --- S0002477 // FMP16 SGDID:S0002477, Chr IV from 588376-588095, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023512 // cdna:GeneFinder chromosome:SGD1:IV:588095:588376:-1 // ensembl // 11 // --- /// YDR070C // cdna:known chromosome:SGD1:IV:588095:588376:-1 gene:YDR070C // ensembl // 11 // --- --- No cerevisiae_gene -1.74588860661796 1.37021310885567 -1.22794060541699 -1.18368653415268 -1.27721055972983 Max fold change below threshold 4 1.74588860661796 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775688_at YDL183C.S1 Hypothetical protein 1.74557958073804 315.561904907227 515.415924072266 --- --- --- --- 512.8671875 337.314697265625 293.809112548828 517.964660644531 0.00122069998178631 0.00195312988944352 0.00195312988944352 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL183C /GEN=RPL41A /DB_XREF=GI:6320018 /SEG=NC_001136:-130872,131834 /DEF=Hypothetical ORF /NOTE=Ydl183cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002342 // YDL183C SGDID:S0002342, Chr IV from 131834-130872, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024966 // cdna:Genscan chromosome:SGD1:IV:130872:131834:-1 // ensembl // 11 // --- /// YDL183C // cdna:known chromosome:SGD1:IV:130872:131834:-1 gene:YDL183C // ensembl // 11 // --- --- No cerevisiae_gene -1.35059522804953 -1.52044127237104 1.36535668518744 -1.74557958073804 1.00993916801225 Max fold change below threshold 4 1.74557958073804 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777847_at YKR045C.S1 Hypothetical protein 1.74552125812407 191.828498840332 280.818450927734 --- --- 5737 // cytoplasm // inferred from direct assay --- 275.666137695313 157.927688598633 225.729309082031 285.970764160156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR045C /GEN=UIP5 /DB_XREF=GI:37362675 /SEG=NC_001143:-523060,523611 /DEF=Hypothetical ORF /NOTE=Ykr045cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001753 // YKR045C SGDID:S0001753, Chr XI from 523611-523060, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018455 // cdna:Genscan chromosome:SGD1:XI:523060:523611:-1 // ensembl // 11 // --- /// GENEFINDER00000023177 // cdna:GeneFinder chromosome:SGD1:XI:523060:523611:-1 // ensembl // 11 // --- /// YKR045C // cdna:known chromosome:SGD1:XI:523060:523611:-1 gene:YKR045C // ensembl // 11 // --- --- No cerevisiae_gene -1.12351038631324 -1.74552125812407 1.41965728435692 -1.22122438958573 1.0373808206949 Max fold change below threshold 4 1.74552125812407 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777178_at YJL128C.S1 MAP kinase kinase that plays a pivotal role in the osmosensing signal-transduction pathway, activated under severe osmotic stress 1.74501404048681 279.174774169922 405.82292175293 PBS2 169 // activation of MAPK activity during osmolarity sensing // traceable author statement /// 6468 // protein amino acid phosphorylation // traceable author statement /// 7015 // actin filament organization // inferred from mutant phenotype /// 7231 // osmosensory signaling pathway // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4708 // MAP kinase kinase activity // traceable author statement /// 5078 // MAP-kinase scaffold activity // inferred from physical interaction 377.579223632813 216.376037597656 341.973510742188 434.066619873047 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL128C /GEN=PBS2 /DB_XREF=GI:6322333 /SEG=NC_001142:-178015,180021 /DEF=Involved in osmoregulation, member of the HOG1 mitogen-activated protein kinase (MAPK) cascade /NOTE=Pbs2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9755161]; go_function: MAP kinase kinase activity [goid GO:0004708] [evidence TAS] [pmid 7624781]; go_function: MAP-kinase scaffold activity [goid GO:0005078] [evidence IPI] [pmid 9180081]; go_process: actin filament organization [goid GO:0007015] [evidence IMP] [pmid 7941729]; go_process: activation of MAPK during osmolarity sensing [goid GO:0000169] [evidence TAS] [pmid 7624781]; go_process: osmosensory signaling pathway [goid GO:0007231] [evidence IMP] [pmid 7624781]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 7624781] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-58 /// hanks // 2.1.8 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DdMLCK // 6.0E-70 --- --- S0003664 // PBS2 SGDID:S0003664, Chr X from 180021-178015, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024386 // cdna:GeneFinder chromosome:SGD1:X:173517:180021:-1 // ensembl // 11 // --- /// GENSCAN00000024039 // cdna:Genscan chromosome:SGD1:X:178015:180021:-1 // ensembl // 11 // --- /// YJL128C // cdna:known chromosome:SGD1:X:178015:180021:-1 gene:YJL128C // ensembl // 11 // --- --- No cerevisiae_gene -1.20693472727895 -1.74501404048681 1.06069759780468 -1.10411833598851 1.14960409022708 Max fold change below threshold 4 1.74501404048681 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772485_at YOR195W.S1 Kinetochore-associated protein required for normal segregation of chromosomes in meiosis and mitosis; component of the FEAR regulatory network, which promotes Cdc14p release from the nucleolus during anaphase; potential Cdc28p substrate 1.74484188918403 113.137264251709 167.901428222656 SLK19 7126 // meiosis // inferred from mutant phenotype /// 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from mutant phenotype /// 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from genetic interaction 776 // kinetochore // inferred from direct assay /// 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 5819 // spindle // inferred from direct assay --- 164.044464111328 132.257720947266 94.0168075561523 171.758392333984 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR195W /GEN=SLK19 /DB_XREF=GI:6324769 /SEG=NC_001147:+712866,715331 /DEF=Kinetochore-associated protein required for normal segregation of chromosomes in meiosis and mitosis; component of the FEAR regulatory network, which promotes Cdc14p release from the nucleolus during anaphase; potential Cdc28p substrate /NOTE=Slk19p; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IDA] [pmid 10427094]; go_component: spindle [goid GO:0005819] [evidence IDA] [pmid 11533655]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 10835382]; go_process: mitotic spindle assembly (sensu Fungi) [goid GO:0030472] [evidence IGI,IMP] [pmid 11533655] --- --- --- --- --- --- S0005721 // SLK19 SGDID:S0005721, Chr XV from 712866-715331, Verified ORF // sgd // 11 // --- /// GENSCAN00000017614 // cdna:Genscan chromosome:SGD1:XV:712866:715379:1 // ensembl // 11 // --- /// GENEFINDER00000022563 // cdna:GeneFinder chromosome:SGD1:XV:712866:715379:1 // ensembl // 11 // --- /// YOR195W // cdna:known chromosome:SGD1:XV:712866:715331:1 gene:YOR195W // ensembl // 11 // --- --- No cerevisiae_gene -1.21487243284498 -1.24033941411055 -1.33718986862829 -1.74484188918403 1.04702339859162 Max fold change below threshold 4 1.74484188918403 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772783_at YLR285W.S1 Putative nicotinamide N-methyltransferase, has a role in rDNA silencing and in lifespan determination 1.7445632670922 242.960250854492 175.404121398926 NNT1 183 // chromatin silencing at ribosomal DNA // inferred from mutant phenotype /// 6769 // nicotinamide metabolism // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay 8112 // nicotinamide N-methyltransferase activity // inferred from sequence similarity 154.265319824219 216.794891357422 269.125610351563 196.542922973633 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244140625 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR285W /GEN=NNT1 /DB_XREF=GI:6323315 /SEG=NC_001144:+707362,708147 /DEF=Putative nicotinamide N-methyltransferase, has a role in rDNA silencing and in lifespan determination /NOTE=Nnt1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: nicotinamide N-methyltransferase activity [goid GO:0008112] [evidence ISS] [pmid 12736687]; go_process: chromatin silencing at ribosomal DNA [goid GO:0000183] [evidence IMP] [pmid 12736687]; go_process: nicotinamide metabolism [goid GO:0006769] [evidence ISS] [pmid 12736687] --- --- --- --- --- --- S0004275 // NNT1 SGDID:S0004275, Chr XII from 707362-708147, Verified ORF // sgd // 11 // --- /// GENSCAN00000018041 // cdna:Genscan chromosome:SGD1:XII:707362:708147:1 // ensembl // 11 // --- /// GENEFINDER00000024846 // cdna:GeneFinder chromosome:SGD1:XII:707362:708147:1 // ensembl // 11 // --- /// YLR285W // cdna:known chromosome:SGD1:XII:707362:708147:1 gene:YLR285W // ensembl // 11 // --- --- No cerevisiae_gene 1.42196713093619 1.40533784005669 1.41510941913358 1.7445632670922 1.27405772857819 Max fold change below threshold 4 1.7445632670922 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772577_at SPBC106.02c.S1 --- 1.74366091265055 --- --- --- --- 13.0396203994751 21.4475250244141 11.5608386993408 7.47830057144165 0.303710997104645 0.149657994508743 0.334473013877869 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC106.02c /DEF=ParBc-like nuclease domain (SMART) --- --- --- --- --- --- SPBC106.02c // |srx1||sulphiredoxin |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.08156873838036 1.64479673237094 1.27283551498779 -1.12791301207399 -1.74366091265055 Max fold change below threshold 4 1.74366091265055 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771219_at YFR019W.S1 1-phosphatidylinositol-3-phosphate 5-kinase; vacuolar membrane kinase that generates phosphatidylinositol (3,5)P2, which is involved in vacuolar sorting and homeostasis 1.74359355962756 508.886291503906 847.599243164063 FAB1 6644 // phospholipid metabolism // inferred from mutant phenotype /// 6644 // phospholipid metabolism // inferred from genetic interaction /// 6950 // response to stress // traceable author statement /// 7033 // vacuole organization and biogenesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5774 // vacuolar membrane // traceable author statement 285 // 1-phosphatidylinositol-3-phosphate 5-kinase activity // inferred from direct assay 745.10205078125 428.722839355469 589.049743652344 950.096435546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR019W /GEN=FAB1 /DB_XREF=GI:14318541 /SEG=NC_001138:+184490,191326 /DEF=1-phosphatidylinositol-3-phosphate 5-kinase; vacuolar membrane kinase that generates phosphatidylinositol (3,5)P2, which is involved in vacuolar sorting and homeostasis /NOTE=Fab1p; go_component: vacuolar membrane [goid GO:0005774] [evidence TAS] [pmid 9624177]; go_function: 1-phosphatidylinositol-3-phosphate 5-kinase activity [goid GO:0000285] [evidence IDA] [pmid 9811604]; go_process: phospholipid metabolism [goid GO:0006644] [evidence IGI,IMP] [pmid 9372916]; go_process: response to stress [goid GO:0006950] [evidence TAS] [pmid 12176349]; go_process: vacuole organization and biogenesis [goid GO:0007033] [evidence IMP] [pmid 9811604] --- --- --- --- --- --- S0001915 // FAB1 SGDID:S0001915, Chr VI from 184490-191326, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018537 // cdna:GeneFinder chromosome:SGD1:VI:184490:191326:1 // ensembl // 11 // --- /// GENSCAN00000023260 // cdna:Genscan chromosome:SGD1:VI:184490:191326:1 // ensembl // 11 // --- /// YFR019W // cdna:known chromosome:SGD1:VI:184490:191326:1 gene:YFR019W // ensembl // 11 // --- --- No cerevisiae_gene -1.74359355962756 -1.73795744565747 1.03065527543482 -1.26492212043302 1.2751225614675 Max fold change below threshold 4 1.74359355962756 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772565_at YLR199C.S1 Hypothetical protein 1.74359105382766 379.882125854492 507.705932617188 --- --- 5737 // cytoplasm // inferred from direct assay --- 470.671997070313 269.944030761719 489.820220947266 544.739868164063 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR199C /GEN=SIK1 /DB_XREF=GI:37362679 /SEG=NC_001144:-547855,548771 /DEF=Hypothetical ORF /NOTE=Ylr199cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004189 // YLR199C SGDID:S0004189, Chr XII from 548771-548766,548679-547855, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017974 // cdna:Genscan chromosome:SGD1:XII:547855:548517:-1 // ensembl // 11 // --- /// YLR199C // cdna:known chromosome:SGD1:XII:547855:548771:-1 gene:YLR199C // ensembl // 11 // --- --- No cerevisiae_gene 1.21922974678045 -1.74359105382766 -1.19274278143368 1.04068273446506 1.15736621586749 Max fold change below threshold 4 1.74359105382766 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775024_at YJL031C.S1 Alpha subunit of Type II geranylgeranyltransferase required for vesicular transport between the endoplasmic reticulum and the Golgi; provides a membrane attachment moiety to Rab-like proteins Ypt1p and Sec4p 1.74348173177914 514.831420898438 648.765045166016 BET4 18348 // protein amino acid geranylgeranylation // inferred from direct assay 5968 // Rab-protein geranylgeranyltransferase complex // inferred from direct assay 4663 // Rab-protein geranylgeranyltransferase activity // inferred from direct assay 578.516906738281 462.358276367188 567.304565429688 719.01318359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL031C /GEN=BET4 /DB_XREF=GI:41629687 /SEG=NC_001142:-386284,387354 /DEF=catalyzes prenylation of Ypt1p (as a subunit of PGGTase-II) /NOTE=Bet4p; go_component: Rab-protein geranylgeranyltransferase complex [goid GO:0005968] [evidence IDA] [pmid 8756702]; go_function: RAB-protein geranylgeranyltransferase activity [goid GO:0004663] [evidence IDA] [pmid 8756702]; go_process: protein amino acid geranylgeranylation [goid GO:0018348] [evidence IDA] [pmid 8756702] --- --- --- --- --- --- S0003568 // BET4 SGDID:S0003568, Chr X from 387354-387352,387264-386284, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000024115 // cdna:Genscan chromosome:SGD1:X:386284:387156:-1 // ensembl // 11 // --- /// YJL031C // cdna:known chromosome:SGD1:X:386284:387354:-1 gene:YJL031C // ensembl // 11 // --- YJL032W // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene -1.74348173177914 -1.25123077991329 1.29115376917738 -1.01976423598866 1.24285595670418 Max fold change below threshold 4 1.74348173177914 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771432_at YGR149W.S1 Hypothetical protein 1.74329164034326 2624.57849121094 1746.89788818359 --- --- 16021 // integral to membrane // inferred from sequence similarity --- 1770.61218261719 3011.5029296875 2237.65405273438 1723.18359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR149W /GEN=RPL24B /DB_XREF=GI:6321588 /SEG=NC_001139:+789034,790332 /DEF=Hypothetical ORF /NOTE=Ygr149wp; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 12524434]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003381 // span:114-131,136-155,162-184,194-213,220-242,320-342,347-369 // numtm:7 S0003381 // YGR149W SGDID:S0003381, Chr VII from 789036-790334, Uncharacterized ORF // sgd // 11 // --- /// YGR149W // cdna:known chromosome:SGD1:VII:789036:790334:1 gene:YGR149W // ensembl // 11 // --- --- No cerevisiae_gene -1.74329164034326 1.70082582693864 1.00256341755916 1.26377423283445 -1.02752381640541 Max fold change below threshold 4 1.74329164034326 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777075_at SPBC947.13.S1 --- 1.74269693546931 --- --- --- --- 8.06835556030273 6.10008382797241 11.2061948776245 7.67739248275757 0.00805663969367743 0.194580003619194 0.0375977009534836 0.219482004642487 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC947.13 /DEF=conserved fungal protein --- --- --- --- --- --- SPBC947.13 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.28034206685976 -1.32266306297377 1.74269693546931 1.38890692085514 -1.05092394044244 Max fold change below threshold 4 1.74269693546931 Max fold change below threshold PAAAPA No 4 0 PAPA 2 2 0 No No 1 < x = 2
1771782_at YDL130W-A.S1 Protein involved in regulation of the mitochondrial F1F0-ATP synthase; Stf1p and Stf2p act as stabilizing factors that enhance inhibitory action of the Inh1p protein 1.74221141310392 6476.45947265625 4186.17785644531 STF1 15986 // ATP synthesis coupled proton transport // traceable author statement 5753 // proton-transporting ATP synthase complex (sensu Eukaryota) // traceable author statement --- 4451.6572265625 7755.72802734375 5197.19091796875 3920.69848632813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL130W-A /GEN=STF1 /DB_XREF=GI:6320072 /SEG=NC_001136:+229171,229431 /DEF=ATPase stabilizing factor /NOTE=Stf1p; go_component: proton-transporting ATP synthase complex (sensu Eukarya) [goid GO:0005753] [evidence TAS] [pmid 10838056]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 10838056]; go_process: ATP synthesis coupled proton transport [goid GO:0015986] [evidence TAS] [pmid 10838056] --- --- --- --- --- --- S0007232 // STF1 SGDID:S0007232, Chr IV from 229171-229431, Verified ORF // sgd // 11 // --- /// YDL130W-A // cdna:known chromosome:SGD1:IV:229171:229431:1 gene:YDL130W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.03252565545377 1.74221141310392 1.02943711490871 1.16747329218381 -1.13542452756464 Max fold change below threshold 4 1.74221141310392 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772313_at YHR103W.S1 Protein involved in the transport of cell wall components from the Golgi to the cell surface; similar in structure and functionally redundant with Sbe2p; involved in bud growth 1.74197825451032 597.903564453125 793.898620605469 SBE22 7047 // cell wall organization and biogenesis // inferred from genetic interaction /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 758.90966796875 633.183837890625 562.623291015625 828.887573242188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR103W /GEN=SBE22 /DB_XREF=GI:6321895 /SEG=NC_001140:+320416,322974 /DEF=functionally redundant and similar in structure to SBE2 /NOTE=Sbe22p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IGI,IMP] [pmid 10679005] --- --- --- hanks // 1.1.1 // AGC group; AGC I Cyclic nucleotide regulated protein kinase (PKA & PKG); cAPKa // 0.47 --- --- S0001145 // SBE22 SGDID:S0001145, Chr VIII from 320416-322974, Verified ORF // sgd // 11 // --- /// GENSCAN00000016640 // cdna:Genscan chromosome:SGD1:VIII:320416:322974:1 // ensembl // 11 // --- /// GENEFINDER00000020105 // cdna:GeneFinder chromosome:SGD1:VIII:320416:322974:1 // ensembl // 11 // --- /// YHR103W // cdna:known chromosome:SGD1:VIII:320416:322974:1 gene:YHR103W // ensembl // 11 // --- --- No cerevisiae_gene -1.74197825451032 -1.19856133804199 1.09316014443007 -1.34887709074183 1.09220847780308 Max fold change below threshold 4 1.74197825451032 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777301_at YHR102W.S1 Protein kinase of the PAK/Ste20 kinase family, required for cell integrity possibly through regulating 1,6-beta-glucan levels in the wall; physically interacts with Cdc31p (centrin), which is a component of the spindle pole body 1.74155823126435 605.777084350586 663.842071533203 KIC1 902 // cellular morphogenesis // inferred from genetic interaction /// 902 // cellular morphogenesis // inferred from mutant phenotype /// 903 // cellular morphogenesis during vegetative growth // inferred from genetic interaction /// 7047 // cell wall organization and biogenesis // inferred from genetic interaction /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 131 // incipient bud site // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5933 // bud // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay 16301 // kinase activity // inferred from direct assay /// 16301 // kinase activity // inferred from sequence similarity 579.643493652344 488.377044677734 723.177124023438 748.040649414063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR102W /GEN=KIC1 /DB_XREF=GI:6321894 /SEG=NC_001140:+316574,319816 /DEF=Kinase that interacts with Cdc31p; N-rich kinase 1 /NOTE=Kic1p; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 12972564]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 12972564]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 12972564]; go_function: kinase activity [goid GO:0016301] [evidence IDA,ISS] [pmid 9813095]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IGI,IMP] [pmid 12480907]; go_process: cellular morphogenesis [goid GO:0000902] [evidence IGI,IMP] [pmid 9813095] --- --- --- ec // ABL2_HUMAN // (P42684) Tyrosine-protein kinase ABL2 (EC 2.7.1.112) (Tyrosine kinase ARG) // 2.0E-77 /// hanks // 1.2.6 // AGC group; AGC I Diacylglycerol-activated/phospholipid-dependent protein kinase C (PKC) family; PKCe // 5.0E-73 --- --- S0001144 // KIC1 SGDID:S0001144, Chr VIII from 316574-319816, Verified ORF // sgd // 11 // --- /// GENSCAN00000016639 // cdna:Genscan chromosome:SGD1:VIII:316574:319816:1 // ensembl // 11 // --- /// GENEFINDER00000020315 // cdna:GeneFinder chromosome:SGD1:VIII:316574:319816:1 // ensembl // 11 // --- /// YHR102W // cdna:known chromosome:SGD1:VIII:316574:319816:1 gene:YHR102W // ensembl // 11 // --- --- No cerevisiae_gene -1.74155823126435 -1.18687702456374 1.14241657706706 1.24762398257364 1.29051849560261 Max fold change below threshold 4 1.74155823126435 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sc-5.8SrRNA_at AFFX-r2-Sc-5.8SrRNA --- 1.74141786474645 297.464477539063 243.361404418945 --- --- --- --- 308.502899169922 417.772796630859 177.156158447266 178.219909667969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=Z73326 SGD:YLR154C 25S ribosomal RNA corresponds to complement of 7839-7996 in Z73326 --- --- --- --- --- --- K01048 // Yeast (S.cerevisiae) 5.8S ribosomal RNA. // gb // 11 // --- S0028676 // sgd // 10 // Negative Strand Matching Probes /// YLR154W-E // ensembl // 10 // Negative Strand Matching Probes AFFX_control cerevisiae_gene -1.47090516480932 1.35419406999074 -1.13604057776224 -1.74141786474645 -1.73102376577721 Max fold change below threshold 4 1.74141786474645 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778483_at YDR066C.S1 Hypothetical protein 1.74125485474279 249.394943237305 185.330993652344 --- --- 5737 // cytoplasm // inferred from direct assay --- 157.015914916992 225.385162353516 273.404724121094 213.646072387695 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR066C /GEN=RPS13 /DB_XREF=GI:6320271 /SEG=NC_001136:-581904,582494 /DEF=Hypothetical ORF /NOTE=Ydr066cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002473 // YDR066C SGDID:S0002473, Chr IV from 582495-581905, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDR066C // cdna:known chromosome:SGD1:IV:581905:582495:-1 gene:YDR066C // ensembl // 11 // --- --- No cerevisiae_gene 1.30991540976629 1.43542877467337 1.6246703779666 1.74125485474279 1.36066507971909 Max fold change below threshold 4 1.74125485474279 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779154_s_at YHR203C.S1 Protein component of the small (40S) ribosomal subunit; mutation affects 20S pre-rRNA processing; identical to Rps4Bp and has similarity to rat S4 ribosomal protein /// Protein component of the small (40S) ribosomal subunit; identical to Rps4Bp and has similarity to rat S4 ribosomal protein 1.74045207601276 4415.19262695313 6506.05053710938 RPS4A /// RPS4B 6412 // protein biosynthesis // traceable author statement /// 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 7603.27197265625 4368.5615234375 4461.82373046875 5408.8291015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR203C /GEN=RPS4B /DB_XREF=GI:6321997 /SEG=NC_001140:-504474,505528 /DEF=Protein component of the small (40S) ribosomal subunit; identical to Rps4Bp and has similarity to rat S4 ribosomal protein /NOTE=Rps4bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0001246 // RPS4B SGDID:S0001246, Chr VIII from 505529-505516,505246-504475, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0003906 // RPS4A SGDID:S0003906, Chr X from 702983-702970,702713-701942, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000016725 // cdna:Genscan chromosome:SGD1:VIII:504475:505065:-1 // ensembl // 11 // --- /// GENEFINDER00000020210 // cdna:GeneFinder chromosome:SGD1:VIII:504475:505065:-1 // ensembl // 11 // --- /// GENSCAN00000024249 // cdna:Genscan chromosome:SGD1:X:701942:702532:-1 // ensembl // 11 // --- /// GENEFINDER00000024455 // cdna:GeneFinder chromosome:SGD1:X:701942:702787:-1 // ensembl // 11 // --- /// YHR203C // cdna:known chromosome:SGD1:VIII:504475:505529:-1 gene:YHR203C // ensembl // 11 // --- /// YJR145C // cdna:known chromosome:SGD1:X:701942:702983:-1 gene:YJR145C // ensembl // 11 // --- --- No cerevisiae_gene -1.23147574780226 -1.74045207601276 -1.50640168677508 -1.70407269133814 -1.40571495787505 Max fold change below threshold 4 1.74045207601276 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771998_at SPAPB2B4.03.S1 --- 1.74016271808372 --- --- --- --- 5.84149980545044 9.54256343841553 10.1308345794678 6.7277717590332 0.149657994508743 0.111571997404099 0.0952147990465164 0.0239257998764515 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB2B4.03 /GEN=cig2 /DEF=cyclin --- --- --- --- --- --- X70046 // S.pombe mRNA for mitotic B-type cyclin. // gb // 9 // --- /// D28751 // Schizosaccharomyces pombe mRNA for CYC17, complete cds. // gb // 11 // --- /// SPAPB2B4.03 // |cig2|cyc17|cyclin|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- S67490 // gb // 8 // Cross Hyb Matching Probes No No -1.66431505400952 1.63358105901361 1.74016271808372 1.73428655599974 1.15171993205509 Max fold change below threshold 4 1.74016271808372 Max fold change below threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1780083_at YDR381W.S1 Nuclear protein that binds to RNA and to Mex67p, required for export of poly(A)+ mRNA from the nucleus; member of the REF (RNA and export factor binding proteins) family; another family member, Yra2p, can substitute for Yra1p function 1.73990234958751 1491.8447265625 2380.55627441406 YRA1 6406 // mRNA-nucleus export // inferred from genetic interaction 346 // transcription export complex // inferred from physical interaction 3723 // RNA binding // inferred from direct assay 2463.71850585938 1416.00964355469 1567.67980957031 2297.39404296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR381W /GEN=YRA1 /DB_XREF=GI:6320589 /SEG=NC_001136:+1236546,1237992 /DEF=Nuclear protein that binds to RNA and to Mex67p, required for export of poly(A)+ mRNA from the nucleus; member of the REF (RNA and export factor binding proteins) family; another family member, Yra2p, can substitute for Yra1p function /NOTE=Yra1p; go_component: transcription export complex [goid GO:0000346] [evidence IPI] [pmid 11979277]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 11390651]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IGI] [pmid 11979277] --- --- --- --- --- --- S0002789 // YRA1 SGDID:S0002789, Chr IV from 1236548-1236832,1237599-1237994, intron sequence removed, Verified ORF // sgd // 11 // --- /// YDR381W // cdna:known chromosome:SGD1:IV:1236548:1237994:1 gene:YDR381W // ensembl // 11 // --- GENSCAN00000025402 // ensembl // 5 // Cross Hyb Matching Probes /// GENEFINDER00000023423 // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene -1.03213601943544 -1.73990234958751 1.14997526109136 -1.57156996653204 -1.07239701147466 Max fold change below threshold 4 1.73990234958751 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773047_at YMR158C-A.S1 Similar to probable membrane protein YDR340W and to yeast CYC1/CYP3 transcription activator 1.73986356395174 65.5851078033447 95.6896858215332 --- --- --- --- 90.161262512207 74.7602081298828 56.4100074768066 101.218109130859 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR158C-A /GEN=MRPS8 /DB_XREF=GI:6323809 /SEG=NC_001145:-573193,573330 /DEF=Similar to probable membrane protein YDR340W and to yeast CYC1/CYP3 transcription activator /NOTE=Ymr158c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007249 // YMR158C-A SGDID:S0007249, Chr XIII from 573330-573193, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YMR158C-A // cdna:known chromosome:SGD1:XIII:573193:573330:-1 gene:YMR158C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.73986356395174 -1.20600603941026 1.01527643009585 -1.5983203432348 1.1226341148135 Max fold change below threshold 4 1.73986356395174 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777972_at YGL081W.S1 Hypothetical protein 1.73956012248287 88.7121734619141 139.503890991211 --- --- --- --- 131.917297363281 75.8337097167969 101.590637207031 147.090484619141 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL081W /GEN=SCY1 /DB_XREF=GI:6321357 /SEG=NC_001139:+357378,358340 /DEF=Hypothetical ORF /NOTE=Ygl081wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003049 // YGL081W SGDID:S0003049, Chr VII from 357380-358342, Uncharacterized ORF // sgd // 10 // --- /// YGL081W // cdna:known chromosome:SGD1:VII:357380:358342:1 gene:YGL081W // ensembl // 10 // --- --- No cerevisiae_gene -1.06007240709288 -1.73956012248287 -1.00998285022687 -1.29851825906405 1.11502045265584 Max fold change below threshold 4 1.73956012248287 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769885_at YJL196C.S1 Elongase I, medium-chain acyl elongase, catalyzes carboxy-terminal elongation of unsaturated C12-C16 fatty acyl-CoAs to C16-C18 fatty acids 1.73933009348791 698.960021972656 1244.44372558594 ELO1 19368 // fatty acid elongation, unsaturated fatty acid // inferred from mutant phenotype 16020 // membrane // inferred from sequence similarity 9922 // fatty acid elongase activity // inferred from mutant phenotype /// 9922 // fatty acid elongase activity // traceable author statement 1202.35534667969 706.645080566406 691.274963378906 1286.53210449219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL196C /GEN=ELO1 /DB_XREF=GI:6322265 /SEG=NC_001142:-67849,68781 /DEF=Elongase I, medium-chain acyl elongase, catalyzes carboxy-terminal elongation of unsaturated C12-C16 fatty acyl-CoAs to C16-C18 fatty acids /NOTE=Elo1p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 8702485]; go_function: fatty acid elongase activity [goid GO:0009922] [evidence IMP,TAS] [pmid 12684876]; go_process: fatty acid elongation, unsaturated fatty acid [goid GO:0019368] [evidence IMP] [pmid 10850979] --- --- --- --- --- S0003732 // span:64-83,96-118,191-213,233-255,270-292 // numtm:5 S0003732 // ELO1 SGDID:S0003732, Chr X from 68781-67849, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024349 // cdna:GeneFinder chromosome:SGD1:X:67849:68781:-1 // ensembl // 11 // --- /// YJL196C // cdna:known chromosome:SGD1:X:67849:68781:-1 gene:YJL196C // ensembl // 11 // --- --- No cerevisiae_gene 1.09063407547137 -1.70149821989272 1.10326604021749 -1.73933009348791 1.07000988355477 Max fold change below threshold 4 1.73933009348791 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776434_at YBL043W.S1 Non-essential protein of unknown function 1.73910011039066 4223.03845214844 2827.98986816406 ECM13 7047 // cell wall organization and biogenesis // inferred from mutant phenotype --- --- 2901.84790039063 5046.60400390625 3399.47290039063 2754.1318359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL043W /GEN=ECM13 /DB_XREF=GI:6319428 /SEG=NC_001134:+136653,137426 /DEF=Non-essential protein of unknown function /NOTE=Ecm13p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584] --- --- --- --- --- --- S0000139 // ECM13 SGDID:S0000139, Chr II from 136691-137464, Verified ORF // sgd // 11 // --- /// GENSCAN00000021103 // cdna:Genscan chromosome:SGD1:II:136691:137464:1 // ensembl // 11 // --- /// GENEFINDER00000022293 // cdna:GeneFinder chromosome:SGD1:II:136691:137464:1 // ensembl // 11 // --- /// YBL043W // cdna:known chromosome:SGD1:II:136691:137464:1 gene:YBL043W // ensembl // 11 // --- --- No cerevisiae_gene 1.02890879153395 1.73910011039066 -1.24670991388701 1.1714855557843 -1.05363434768287 Max fold change below threshold 4 1.73910011039066 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774679_at SPCC330.03c.S1 --- 1.73816451996408 --- --- --- --- 6.16268396377563 10.7117586135864 8.27010917663574 6.84726333618164 0.567627012729645 0.398925989866257 0.366210997104645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC330.03c /DEF=cytochrome b5 family --- --- --- --- --- --- SPCC330.03c // |||cytochrome b5 family|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -1.08195096811958 1.73816451996408 1.38836691340238 1.34196548537092 1.11108461450076 Max fold change below threshold 4 1.73816451996408 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769790_at SPCC290.04.S1 --- 1.73798658321302 --- --- --- --- 5.34823703765869 8.8139533996582 7.95243072509766 3.21688461303711 0.398925989866257 0.0676269978284836 0.366210997104645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC290.04 /GEN=ams2 /DEF=expressed during cell cycle (PMID 12535531) --- --- --- --- --- --- SPCC290.04 // |ams2|SPCC4F11.01|cell cycle regulated GATA-type transcription factor Ams2|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.73798658321302 1.64801098709655 -1.01025925931931 1.48692562971723 -1.66255171726826 Max fold change below threshold 4 1.73798658321302 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778559_at SPBC1711.07.S1 --- 1.73753745623206 --- --- --- --- 29.9158535003662 43.6181221008301 40.7648735046387 32.145092010498 0.0461426004767418 0.111571997404099 0.0805663987994194 0.0239257998764515 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1711.07 /DEF=WD repeat protein --- --- --- --- --- --- SPBC1711.07 // |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.73753745623206 1.45802699897217 1.04883106741595 1.36265119442906 1.0745169617208 Max fold change below threshold 4 1.73753745623206 Max fold change below threshold PPAAAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1770081_at SPAC732.02c.S1 --- 1.73739763451474 --- --- --- --- 4.24590158462524 4.96281433105469 3.09855651855469 3.66753172874451 0.303710997104645 0.432372987270355 0.466064006090164 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC732.02c /DEF=6-phosphofructo-2-kinase (predicted) --- --- --- --- --- --- SPAC732.02c // |||6-phosphofructo-2-kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.52283330455885 1.16884817797601 -1.73739763451474 -1.37028373024667 -1.15770002788189 Max fold change below threshold 4 1.73739763451474 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774573_at SPAC105.02c.S1 --- 1.73717634152506 --- --- --- --- 1.08903849124908 1.89185190200806 1.14616870880127 1.39998507499695 0.969726979732513 0.962401986122131 0.962401986122131 0.870360970497131 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC105.02c /DEF=hypothetical protein --- --- --- --- --- --- SPAC105.02c // |||ankyrin repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.31261777521732 1.73717634152506 1.08998943354821 1.05245931894166 1.28552396104129 Max fold change below threshold 0 1.73717634152506 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779981_at YPR168W.S1 Component of the RNA polymerase II mediator complex, which is required for transcriptional activation and also has a role in basal transcription 1.73683534928776 31.257152557373 53.9774703979492 NUT2 6366 // transcription from RNA polymerase II promoter // inferred from physical interaction 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from physical interaction 51.8874893188477 30.5637550354004 31.9505500793457 56.0674514770508 0.000244141003349796 0.000732421991415322 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR168W /GEN=NUT2 /DB_XREF=GI:6325426 /SEG=NC_001148:+878070,878543 /DEF=Component of the RNA polymerase II mediator complex, which is required for transcriptional activation and also has a role in basal transcription /NOTE=Nut2p; go_component: mediator complex [goid GO:0000119] [evidence IDA] [pmid 9812975]; go_function: RNA polymerase II transcription mediator activity [goid GO:0016455] [evidence IPI] [pmid 9812975]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IPI] [pmid 9812975] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 9.69999980926514 /// scop // a.4.5.Biotin repressor-like // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Biotin repressor-like // 0.759999990463257 --- S0006372 // NUT2 SGDID:S0006372, Chr XVI from 878072-878545, Verified ORF // sgd // 11 // --- /// GENSCAN00000017314 // cdna:Genscan chromosome:SGD1:XVI:878072:878545:1 // ensembl // 11 // --- /// GENEFINDER00000020781 // cdna:GeneFinder chromosome:SGD1:XVI:878072:878545:1 // ensembl // 11 // --- /// YPR168W // cdna:known chromosome:SGD1:XVI:878072:878545:1 gene:YPR168W // ensembl // 11 // --- --- No cerevisiae_gene 1.23496437360581 -1.69768044727322 1.73683534928776 -1.62399361482011 1.08055818874791 Max fold change below threshold 4 1.73683534928776 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773520_at YDR514C.S1 Hypothetical protein 1.73679784910262 146.420959472656 180.745918273926 --- --- 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 157.348251342773 110.518264770508 182.323654174805 204.143585205078 0.00415039015933871 0.00585938012227416 0.00585938012227416 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR514C /GEN=TTR1 /DB_XREF=GI:6320722 /SEG=NC_001136:-1471536,1472987 /DEF=Hypothetical ORF /NOTE=Ydr514cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002922 // YDR514C SGDID:S0002922, Chr IV from 1472989-1471538, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025500 // cdna:Genscan chromosome:SGD1:IV:1471538:1472941:-1 // ensembl // 11 // --- /// YDR514C // cdna:known chromosome:SGD1:IV:1471538:1472989:-1 gene:YDR514C // ensembl // 11 // --- --- No cerevisiae_gene 1.73679784910262 -1.42373074413997 -1.1965143891879 1.15872691700668 1.29739977065499 Max fold change below threshold 4 1.73679784910262 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1770503_at YCL058C.S1 Protein of unknown function, required for survival upon exposure to K1 killer toxin; involved in ion homeostasis 1.73644059911682 42.8025798797607 68.9546966552734 FYV5 --- --- --- 70.9799041748047 44.7284927368164 40.8766670227051 66.9294891357422 0.000244141003349796 0.014160200022161 0.0107421996071935 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL058C /GEN=FYV5 /DB_XREF=GI:6319792 /SEG=NC_001135:-23523,23981 /DEF=Protein of unknown function, required for survival upon exposure to K1 killer toxin; involved in ion homeostasis /NOTE=Fyv5p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell ion homeostasis [goid GO:0006873] [evidence IMP] [pmid 10234789] --- --- --- --- --- S0000563 // span:89-111,126-148 // numtm:2 S0000563 // FYV5 SGDID:S0000563, Chr III from 23981-23523, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YCL058C // cdna:known chromosome:SGD1:III:23523:23981:-1 gene:YCL058C // ensembl // 11 // --- GENEFINDER00000023327 // ensembl // 10 // Negative Strand Matching Probes /// GENSCAN00000022421 // ensembl // 8 // Negative Strand Matching Probes /// YCL058W-A // ensembl // 10 // Negative Strand Matching Probes No cerevisiae_gene -1.4984797726899 -1.5869057916271 -1.15938695346073 -1.73644059911682 -1.06051764463416 Max fold change below threshold 4 1.73644059911682 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1773699_at YOL084W.S1 Protein of unknown function, expression is regulated by phosphate levels; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and vacuole 1.73643002202362 4833.86145019531 5136.43798828125 PHM7 --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 6069.9853515625 5872.91650390625 3794.80639648438 4202.890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL084W /GEN=PHM7 /DB_XREF=GI:6324488 /SEG=NC_001147:+162355,165330 /DEF=Protein of unknown function, expression is regulated by phosphate levels; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and vacuole /NOTE=Phm7p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005444 // span:10-32,88-110,139-158,392-414,434-456,477-499,526-548,585-616,636-658,665-682 // numtm:10 S0005444 // PHM7 SGDID:S0005444, Chr XV from 162355-165330, Verified ORF // sgd // 11 // --- /// GENSCAN00000017399 // cdna:Genscan chromosome:SGD1:XV:162355:165330:1 // ensembl // 11 // --- /// GENEFINDER00000022568 // cdna:GeneFinder chromosome:SGD1:XV:162355:165330:1 // ensembl // 11 // --- /// YOL084W // cdna:known chromosome:SGD1:XV:162355:165330:1 gene:YOL084W // ensembl // 11 // --- --- No cerevisiae_gene -1.73643002202362 -1.03355553369866 -1.18253606777195 -1.59955073259756 -1.44424061750655 Max fold change below threshold 4 1.73643002202362 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779947_at YDR298C.S1 Subunit 5 of the stator stalk of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis; homologous to bovine subunit OSCP (oligomycin sensitivity-conferring protein) 1.73640754933031 3668.06567382813 2173.52795410156 ATP5 15986 // ATP synthesis coupled proton transport // inferred from mutant phenotype /// 15986 // ATP synthesis coupled proton transport // inferred from sequence similarity 274 // proton-transporting ATP synthase, stator stalk (sensu Eukaryota) // inferred from mutant phenotype /// 274 // proton-transporting ATP synthase, stator stalk (sensu Eukaryota) // traceable author statement /// 274 // proton-transporting ATP synthase, stator stalk (sensu Eukaryota) // inferred from sequence similarity 5198 // structural molecule activity // inferred from mutant phenotype /// 5198 // structural molecule activity // inferred from sequence similarity /// 46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // traceable author statement 2212.28491210938 3841.42822265625 3494.703125 2134.77099609375 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR298C /GEN=ATP5 /DB_XREF=GI:6320504 /SEG=NC_001136:-1058168,1058806 /DEF=Subunit 5 of the stator stalk of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis; homologous to bovine subunit OSCP (oligomycin sensitivity-conferring protein) /NOTE=Atp5p; go_component: proton-transporting ATP synthase, stator stalk (sensu Eukarya) [goid GO:0000274] [evidence TAS] [pmid 10838056]; go_component: proton-transporting ATP synthase, stator stalk (sensu Eukarya) [goid GO:0000274] [evidence IMP,ISS] [pmid 2146269]; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism [goid GO:0046933] [evidence TAS] [pmid 10838056]; go_function: structural molecule activity [goid GO:0005198] [evidence IMP,ISS] [pmid 2146269]; go_process: ATP synthesis coupled proton transport [goid GO:0015986] [evidence IMP,ISS] [pmid 2146269] --- --- --- --- --- --- S0002706 // ATP5 SGDID:S0002706, Chr IV from 1058808-1058170, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023544 // cdna:GeneFinder chromosome:SGD1:IV:1058170:1058808:-1 // ensembl // 11 // --- /// GENSCAN00000025329 // cdna:Genscan chromosome:SGD1:IV:1058170:1058808:-1 // ensembl // 11 // --- /// YDR298C // cdna:known chromosome:SGD1:IV:1058170:1058808:-1 gene:YDR298C // ensembl // 11 // --- --- No cerevisiae_gene 1.12555488765184 1.73640754933031 1.09389308790281 1.57968040457676 -1.03631017854255 Max fold change below threshold 4 1.73640754933031 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769556_at YDR140W.S1 Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family; methylates release factor eRF1 (Sup45p) in vitro 1.73631408010263 313.293609619141 273.878555297852 --- 18364 // peptidyl-glutamine methylation // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8276 // protein methyltransferase activity // inferred from direct assay /// 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from sequence similarity 258.973358154297 280.051300048828 346.535919189453 288.783752441406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR140W /GEN=RUB1 /DB_XREF=GI:6320344 /SEG=NC_001136:+734132,734797 /DEF=Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family /NOTE=Ydr140wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: S-adenosylmethionine-dependent methyltransferase activity [goid GO:0008757] [evidence ISS] [pmid 9873020]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002547 // YDR140W SGDID:S0002547, Chr IV from 734133-734798, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025199 // cdna:Genscan chromosome:SGD1:IV:734133:734798:1 // ensembl // 11 // --- /// YDR140W // cdna:known chromosome:SGD1:IV:734133:734798:1 gene:YDR140W // ensembl // 11 // --- --- No cerevisiae_gene 1.09102562455817 1.08139038719949 1.73631408010263 1.3381141661027 1.11510988813509 Max fold change below threshold 4 1.73631408010263 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775376_at YPR115W.S1 Hypothetical protein 1.73630633784707 1887.00506591797 1338.48370361328 --- --- 5737 // cytoplasm // inferred from direct assay --- 1229.41137695313 1639.37536621094 2134.634765625 1447.55603027344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR115W /GEN=PIS1 /DB_XREF=GI:6325372 /SEG=NC_001148:+754873,758124 /DEF=Hypothetical ORF /NOTE=Ypr115wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 2.0 --- S0006319 // YPR115W SGDID:S0006319, Chr XVI from 754875-758126, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017269 // cdna:Genscan chromosome:SGD1:XVI:754875:758126:1 // ensembl // 11 // --- /// GENEFINDER00000020796 // cdna:GeneFinder chromosome:SGD1:XVI:754875:758126:1 // ensembl // 11 // --- /// YPR115W // cdna:known chromosome:SGD1:XVI:754875:758126:1 gene:YPR115W // ensembl // 11 // --- --- No cerevisiae_gene -1.49055852184655 1.33346363710562 1.46218248260559 1.73630633784707 1.17743829072165 Max fold change below threshold 4 1.73630633784707 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779689_at YML006C.S1 CAAX box containing protein of unknown function, proposed to be involved in the RAS/cAMP signaling pathway 1.73595823532363 753.304656982422 1108.16619873047 GIS4 7242 // intracellular signaling cascade // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay --- 1034.66564941406 770.782287597656 735.827026367188 1181.66674804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML006C /GEN=GIS4 /DB_XREF=GI:6323637 /SEG=NC_001145:-256092,258416 /DEF=GIG3 suppressor /NOTE=Gis4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ISS] [pmid 10628841]; go_process: intracellular signaling cascade [goid GO:0007242] [evidence IGI] [pmid 10628841] --- --- --- --- --- --- S0004465 // GIS4 SGDID:S0004465, Chr XIII from 258416-256092, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018713 // cdna:Genscan chromosome:SGD1:XIII:256092:258416:-1 // ensembl // 11 // --- /// GENEFINDER00000021783 // cdna:GeneFinder chromosome:SGD1:XIII:256092:258416:-1 // ensembl // 11 // --- /// YML006C // cdna:known chromosome:SGD1:XIII:256092:258416:-1 gene:YML006C // ensembl // 11 // --- --- No cerevisiae_gene -1.73595823532363 -1.34235784353435 -1.11598053876201 -1.40612618501152 1.14207594377571 Max fold change below threshold 4 1.73595823532363 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770765_at YKL045W.S1 Subunit of DNA primase, which is required for DNA synthesis and double-strand break repair 1.73581085993218 293.416748046875 261.89575958252 PRI2 731 // DNA synthesis during DNA repair // inferred from mutant phenotype /// 6269 // DNA replication, synthesis of RNA primer // traceable author statement /// 6270 // DNA replication initiation // traceable author statement /// 6273 // lagging strand elongation // traceable author statement 5634 // nucleus // inferred from direct assay /// 5635 // nuclear membrane // inferred from direct assay /// 5658 // alpha DNA polymerase:primase complex // traceable author statement 3889 // alpha DNA polymerase activity // traceable author statement 254.174514770508 287.727691650391 299.105804443359 269.617004394531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL045W /GEN=PRI2 /DB_XREF=GI:6322806 /SEG=NC_001143:+353138,354724 /DEF=Subunit of DNA primase, which is required for DNA synthesis and double-strand break repair /NOTE=Pri2p; go_component: alpha DNA polymerase:primase complex [goid GO:0005658] [evidence TAS] [pmid 9745046]; go_function: alpha DNA polymerase activity [goid GO:0003889] [evidence TAS] [pmid 9745046]; go_process: DNA replication initiation [goid GO:0006270] [evidence TAS] [pmid 9745046]; go_process: DNA replication, synthesis of RNA primer [goid GO:0006269] [evidence TAS] [pmid 9745046]; go_process: DNA synthesis during DNA repair [goid GO:0000731] [evidence IMP] [pmid 10025407]; go_process: lagging strand elongation [goid GO:0006273] [evidence TAS] [pmid 9745046] --- --- --- --- --- --- S0001528 // PRI2 SGDID:S0001528, Chr XI from 353138-354724, Verified ORF // sgd // 11 // --- /// GENSCAN00000018384 // cdna:Genscan chromosome:SGD1:XI:353138:354724:1 // ensembl // 11 // --- /// YKL045W // cdna:known chromosome:SGD1:XI:353138:354724:1 gene:YKL045W // ensembl // 11 // --- --- No cerevisiae_gene 1.73581085993218 1.13200842307175 1.39994816774416 1.17677338624378 1.06075546023159 Max fold change below threshold 4 1.73581085993218 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775319_at YJR093C.S1 Subunit of cleavage polyadenylation factor (CPF), interacts directly with poly(A) polymerase (Pap1p) to regulate its activity 1.73546611437431 398.606262207031 523.593139648438 FIP1 6378 // mRNA polyadenylylation // inferred from direct assay /// 6378 // mRNA polyadenylylation // traceable author statement /// 6379 // mRNA cleavage // inferred from direct assay /// 6379 // mRNA cleavage // traceable author statement 5847 // mRNA cleavage and polyadenylation specificity factor complex // traceable author statement /// 5847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from physical interaction 3723 // RNA binding // inferred from mutant phenotype /// 5515 // protein binding // inferred from physical interaction 499.473693847656 339.333282470703 457.879241943359 547.712585449219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR093C /GEN=FIP1 /DB_XREF=GI:6322552 /SEG=NC_001142:-603137,604120 /DEF=Subunit of cleavage polyadenylation factor (CPF), interacts directly with poly(A) polymerase (Pap1p) to regulate its activity /NOTE=Fip1p; go_component: mRNA cleavage and polyadenylation specificity factor complex [goid GO:0005847] [evidence TAS] [pmid 11344258]; go_component: mRNA cleavage and polyadenylation specificity factor complex [goid GO:0005847] [evidence IPI] [pmid 12819204]; go_function: cleavage/polyadenylation specificity factor activity [goid GO:0030364] [evidence TAS] [pmid 11344258]; go_process: mRNA cleavage [goid GO:0006379] [evidence IDA,TAS] [pmid 11344258]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IDA,TAS] [pmid 11344258] --- --- --- --- --- --- S0003853 // FIP1 SGDID:S0003853, Chr X from 604120-603137, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024205 // cdna:Genscan chromosome:SGD1:X:603137:604120:-1 // ensembl // 11 // --- /// GENEFINDER00000024521 // cdna:GeneFinder chromosome:SGD1:X:603137:604120:-1 // ensembl // 11 // --- /// YJR093C // cdna:known chromosome:SGD1:X:603137:604120:-1 gene:YJR093C // ensembl // 11 // --- --- No cerevisiae_gene -1.73546611437431 -1.47192662685771 1.01924584435008 -1.09084153220784 1.09657944391417 Max fold change below threshold 4 1.73546611437431 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779134_at YML052W.S1 Integral membrane protein localized to cortical patch structures; multicopy suppressor of rvs167 mutation; mutants show defects in sporulation and altered sphingolipid content in plasma membrane 1.73534011970514 2858.17456054688 3470.7236328125 SUR7 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5938 // cell cortex // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity /// 30479 // actin cortical patch // inferred from direct assay /// 45121 // lipid raft // inferred from direct assay --- 3686.06323242188 2875.82763671875 2840.521484375 3255.38403320313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML052W /GEN=SUR7 /DB_XREF=GI:6323589 /SEG=NC_001145:+170402,171310 /DEF=Multicopy suppressor of rvs167 mutation /NOTE=Sur7p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 11784867]; go_component: cell cortex [goid GO:0005938] [evidence IDA] [pmid 11784867]; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 11784867]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 11784867] --- --- --- --- --- S0004516 // span:7-29,117-139,146-168,188-210 // numtm:4 S0004516 // SUR7 SGDID:S0004516, Chr XIII from 170402-171310, Verified ORF // sgd // 11 // --- /// GENSCAN00000018673 // cdna:Genscan chromosome:SGD1:XIII:170402:171310:1 // ensembl // 11 // --- /// YML052W // cdna:known chromosome:SGD1:XIII:170402:171310:1 gene:YML052W // ensembl // 11 // --- GENEFINDER00000022004 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.08074409716573 -1.28173997125488 -1.73534011970514 -1.2976713088417 -1.13229750924194 Max fold change below threshold 4 1.73534011970514 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770612_at YGR148C.S1 Ribosomal protein L30 of the large (60S) ribosomal subunit, nearly identical to Rpl24Ap and has similarity to rat L24 ribosomal protein; not essential for translation but may be required for normal translation rate 1.73517525646097 1684.09643554688 1693.62194824219 RPL24B 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3723 // RNA binding // inferred from direct assay /// 3735 // structural constituent of ribosome // traceable author statement 1726.80810546875 1549.55102539063 1818.64184570313 1660.43579101563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR148C /GEN=RPL24B /DB_XREF=GI:6321587 /SEG=NC_001139:-787315,787782 /DEF=Ribosomal protein L30 of the large (60S) ribosomal subunit, nearly identical to Rpl24Ap and has similarity to rat L24 ribosomal protein; not essential for translation but may be required for normal translation rate /NOTE=Rpl24bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 6337137]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0003380 // RPL24B SGDID:S0003380, Chr VII from 787784-787317, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019455 // cdna:Genscan chromosome:SGD1:VII:787317:787784:-1 // ensembl // 11 // --- /// GENEFINDER00000021458 // cdna:GeneFinder chromosome:SGD1:VII:787317:787784:-1 // ensembl // 11 // --- /// YGR148C // cdna:known chromosome:SGD1:VII:787317:787784:-1 gene:YGR148C // ensembl // 11 // --- --- No cerevisiae_gene 1.73517525646097 -1.11439254156438 -1.25335017932833 1.0531812075375 -1.03997282810468 Max fold change below threshold 4 1.73517525646097 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775891_at YHL039W.S1 Hypothetical protein 1.73446199891269 446.454803466797 481.479263305664 --- --- 5737 // cytoplasm // inferred from direct assay --- 424.319122314453 436.219543457031 456.690063476563 538.639404296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL039W /GEN=ARN1 /DB_XREF=GI:6321748 /SEG=NC_001140:+21780,23537 /DEF=Hypothetical ORF /NOTE=Yhl039wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001031 // YHL039W SGDID:S0001031, Chr VIII from 21780-23537, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016518 // cdna:Genscan chromosome:SGD1:VIII:21780:23537:1 // ensembl // 11 // --- /// YHL039W // cdna:known chromosome:SGD1:VIII:21780:23537:1 gene:YHL039W // ensembl // 11 // --- --- No cerevisiae_gene 1.73446199891269 1.02804592231825 1.15912836864033 1.07628914055426 1.26942052801877 Max fold change below threshold 4 1.73446199891269 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772104_at YJR110W.S1 Phosphatidylinositol 3-phosphate [PI(3)P] phosphatase, regulates the localization and levels of PI(3)P; involved in cytoplasm to vacuole (CVT) transport; has similarity to the conserved myotubularin dual specificity phosphatase family 1.73439628675992 815.351257324219 1188.18914794922 YMR1 16192 // vesicle-mediated transport // inferred from mutant phenotype /// 46856 // phosphoinositide dephosphorylation // inferred from direct assay /// 46856 // phosphoinositide dephosphorylation // inferred from mutant phenotype /// 48017 // inositol lipid-mediated signaling // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4438 // phosphatidylinositol-3-phosphatase activity // inferred from direct assay /// 4438 // phosphatidylinositol-3-phosphatase activity // inferred from mutant phenotype /// 16791 // phosphoric monoester hydrolase activity // inferred from sequence similarity 1247.99096679688 911.148986816406 719.553527832031 1128.38732910156 0.000732421991415322 0.000732421991415322 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR110W /GEN=YMR1 /DB_XREF=GI:6322570 /SEG=NC_001142:+633530,635596 /DEF=Myotubularin-like protein; active site identical to human myotubularin; has phosphatidylinositol 3-phosphate [PI(3)P] phosphatase activity; is not essential /NOTE=Ymr1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: phosphoric monoester hydrolase activity [goid GO:0016791] [evidence ISS] [pmid 9736772]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003871 // YMR1 SGDID:S0003871, Chr X from 633530-635596, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024219 // cdna:Genscan chromosome:SGD1:X:634457:635596:1 // ensembl // 11 // --- /// YJR110W // cdna:known chromosome:SGD1:X:633530:635596:1 gene:YJR110W // ensembl // 11 // --- --- No cerevisiae_gene 1.320382114144 -1.36968924386056 -1.08186728669413 -1.73439628675992 -1.10599519740313 Max fold change below threshold 4 1.73439628675992 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769501_at YLR266C.S1 Transcription factor; targets include ATP-binding cassette (ABC) transporters, major facilitator superfamily transporters, and other genes involved in the pleiotropic drug resistance (PDR) phenomenon 1.73434285873174 100.920207977295 138.632785797119 PDR8 6950 // response to stress // inferred from genetic interaction /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from physical interaction 5634 // nucleus // inferred from physical interaction /// 5634 // nucleus // inferred from sequence similarity 3677 // DNA binding // inferred from direct assay /// 3704 // specific RNA polymerase II transcription factor activity // inferred from sequence similarity 121.55233001709 100.220901489258 101.619514465332 155.713241577148 0.000244141003349796 0.00195312988944352 0.00195312988944352 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR266C /GEN=PDR8 /DB_XREF=GI:6323296 /SEG=NC_001144:-675621,677726 /DEF=Pleiotropic Drug Resistance /NOTE=Pdr8p; go_component: nucleus [goid GO:0005634] [evidence IPI,ISS] [pmid 12529331]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 12529331]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence ISS] [pmid 12529331]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IGI,IPI] [pmid 12529331]; go_process: response to stress [goid GO:0006950] [evidence IGI] [pmid 12529331] --- --- --- --- --- --- S0004256 // PDR8 SGDID:S0004256, Chr XII from 677726-675621, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018028 // cdna:Genscan chromosome:SGD1:XII:675621:677726:-1 // ensembl // 11 // --- /// YLR266C // cdna:known chromosome:SGD1:XII:675621:677726:-1 gene:YLR266C // ensembl // 11 // --- --- No cerevisiae_gene -1.33189435871456 -1.2128441094707 1.73434285873174 -1.19615145434057 1.2810387226247 Max fold change below threshold 4 1.73434285873174 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774268_at SPBC18E5.01.S1 --- 1.73429205945228 --- --- --- --- 6.9689507484436 7.88585615158081 12.0861959457397 4.70445871353149 0.0375977009534836 0.129638999700546 0.030273400247097 0.0461426004767418 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC18E5.01 /DEF=cycloisomerase 2 family --- --- --- --- --- --- SPBC18E5.01 // ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.30775810439024 1.13157007937558 -1.26047161035448 1.73429205945228 -1.48135017709874 Max fold change below threshold 4 1.73429205945228 Max fold change below threshold PPAAPP No 4 0 PAPP 1 3 0 No No 2 < x = 3
1769503_at YDR447C.S1 Ribosomal protein 51 (rp51) of the small (40s) subunit; nearly identical to Rps17Bp and has similarity to rat S17 ribosomal protein /// Ribosomal protein 51 (rp51) of the small (40s) subunit; nearly identical to Rps17Ap and has similarity to rat S17 ribosomal protein 1.73418347183441 1345.72772216797 1841.45599365234 RPS17A /// RPS17B 28 // ribosomal small subunit assembly and maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement /// 42729 // DASH complex // inferred from direct assay /// 42729 // DASH complex // inferred from physical interaction 3735 // structural constituent of ribosome // traceable author statement 1813.736328125 1448.34448242188 1243.11096191406 1869.17565917969 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR447C /GEN=RPS17B /DB_XREF=GI:6320655 /SEG=NC_001136:-1354817,1355541 /DEF=Ribosomal protein 51 (rp51) of the small (40s) subunit; nearly identical to Rps17Ap and has similarity to rat S17 ribosomal protein /NOTE=Rps17bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: ribosomal small subunit assembly and maintenance [goid GO:0000028] [evidence IMP] [pmid 3915776] --- --- --- --- --- --- S0002855 // RPS17B SGDID:S0002855, Chr IV from 1355543-1355541,1355226-1354819, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023568 // cdna:GeneFinder chromosome:SGD1:IV:1354819:1355717:-1 // ensembl // 11 // --- /// YDR447C // cdna:known chromosome:SGD1:IV:1354819:1355543:-1 gene:YDR447C // ensembl // 11 // --- --- No cerevisiae_gene 1.73418347183441 -1.25228241632966 -1.16266304667209 -1.45903011371754 1.03056636744548 Max fold change below threshold 4 1.73418347183441 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779111_at YAL041W.S1 Guanine nucleotide exchange factor (GEF or GDP-release factor) for Cdc42p; required for polarity establishment and maintenance, and mutants have morphological defects in bud formation and shmooing 1.73381837406606 614.868560791016 1027.86441040039 CDC24 750 // signal transduction during conjugation with cellular fusion // inferred from genetic interaction /// 750 // signal transduction during conjugation with cellular fusion // inferred from physical interaction /// 750 // signal transduction during conjugation with cellular fusion // traceable author statement /// 753 // cellular morphogenesis during conjugation with cellular fusion // inferred from mutant phenotype /// 753 // cellular morphogenesis during conjugation with cellular fusion // inferred from physical interaction /// 1403 // invasive growth (sensu Saccharomyces) // inferred from physical interaction /// 6033 // chitin localization // inferred from mutant phenotype /// 7096 // regulation of exit from mitosis // inferred from mutant phenotype /// 7118 // budding cell apical bud growth // inferred from physical interaction /// 7119 // budding cell isotropic bud growth // inferred from physical interaction /// 7124 // pseudohyphal growth // inferred from physical interaction /// 7264 // small GTPase mediated signal transduction // traceable author statement /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype 131 // incipient bud site // inferred from direct assay /// 5634 // nucleus // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay 4871 // signal transducer activity // traceable author statement /// 5089 // Rho guanyl-nucleotide exchange factor activity // inferred from direct assay 992.420959472656 572.390380859375 657.346740722656 1063.30786132813 0.00415039015933871 0.0107421996071935 0.00805663969367743 0.0107421996071935 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL041W /GEN=CDC24 /DB_XREF=GI:6319276 /SEG=NC_001133:+62843,65407 /DEF=Guanine nucleotide exchange factor (GEF or GDP-release factor) for Cdc42p; required for polarity establishment and maintenance, and mutants have morphological defects in bud formation and shmooing /NOTE=Cdc24p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 10087263]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 10655592]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10655592]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 10087263]; go_function: Rho guanyl-nucleotide exchange factor activity [goid GO:0005089] [evidence IDA] [pmid 9891811]; go_function: signal transducer activity [goid GO:0004871] [evidence TAS] [pmid 9891811]; go_process: apical bud growth [goid GO:0007118] [evidence IPI] [pmid 10066831]; go_process: cellular morphogenesis during conjugation with cellular fusion [goid GO:0000753] [evidence IMP,IPI] [pmid 10655592]; go_process: chitin localization [goid GO:0006033] [evidence IMP] [pmid 10066831]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IMP] [pmid 9891811]; go_process: invasive growth (sensu Saccharomyces) [goid GO:0001403] [evidence IPI] [pmid 10066831]; go_process: isotropic bud growth [goid GO:0007119] [evidence IPI] [pmid 10066831]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IPI] [pmid 10066831]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence IGI,IPI,TAS] [pmid 10087263]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence TAS] [pmid 9891811] --- --- --- --- --- --- S0000039 // CDC24 SGDID:S0000039, Chr I from 62841-65405, Verified ORF // sgd // 11 // --- /// GENSCAN00000020341 // cdna:Genscan chromosome:SGD1:I:62841:65405:1 // ensembl // 11 // --- /// YAL041W // cdna:known chromosome:SGD1:I:62841:65405:1 gene:YAL041W // ensembl // 11 // --- --- No cerevisiae_gene -1.19254481314067 -1.73381837406606 -1.04122788087354 -1.50973740035835 1.07142825952924 Max fold change below threshold 4 1.73381837406606 Max fold change below threshold PPPPPP No 3 0 PPPP 0 4 0 No No 3 < x
1779493_at YOR346W.S1 Deoxycytidyl transferase, forms a complex with the subunits of DNA polymerase zeta, Rev3p and Rev7p; involved in repair of abasic sites in damaged DNA 1.73378158812144 217.366432189941 150.926666259766 REV1 6261 // DNA-dependent DNA replication // inferred from direct assay /// 6281 // DNA repair // inferred from mutant phenotype 5634 // nucleus // inferred from curator 3887 // DNA-directed DNA polymerase activity // inferred from direct assay /// 17125 // deoxycytidyl transferase activity // inferred from direct assay 141.000030517578 244.463256835938 190.269607543945 160.853302001953 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR346W /GEN=REV1 /DB_XREF=GI:6324921 /SEG=NC_001147:+981823,984780 /DEF=Protein required for mutagenesis by physical and chemical agents /NOTE=Rev1p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 11850424]; go_function: DNA-directed DNA polymerase activity [goid GO:0003887] [evidence IDA] [pmid 11850424]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 2492497]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence IDA] [pmid 11850424] --- --- --- --- scop // a.4.3.ARID domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; ARID-like; ARID domain // 2.79999995231628 --- S0005873 // REV1 SGDID:S0005873, Chr XV from 981823-984780, Verified ORF // sgd // 11 // --- /// GENSCAN00000017798 // cdna:Genscan chromosome:SGD1:XV:981823:984780:1 // ensembl // 11 // --- /// GENEFINDER00000022733 // cdna:GeneFinder chromosome:SGD1:XV:981823:984780:1 // ensembl // 11 // --- /// YOR346W // cdna:known chromosome:SGD1:XV:981823:984780:1 gene:YOR346W // ensembl // 11 // --- --- No cerevisiae_gene 1.43575759005551 1.73378158812144 1.02662171132585 1.34942954867109 1.14080331338581 Max fold change below threshold 4 1.73378158812144 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776302_at YPL247C.S1 Hypothetical protein 1.73322812408503 2574.39660644531 3742.42248535156 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 3783.62768554688 2378.61254882813 2770.1806640625 3701.21728515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL247C /GEN=GAL4 /DB_XREF=GI:6325009 /SEG=NC_001148:-82625,84196 /DEF=Hypothetical ORF /NOTE=Ypl247cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006168 // YPL247C SGDID:S0006168, Chr XVI from 84196-82625, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016997 // cdna:Genscan chromosome:SGD1:XVI:82625:84196:-1 // ensembl // 11 // --- /// GENEFINDER00000020884 // cdna:GeneFinder chromosome:SGD1:XVI:82625:84046:-1 // ensembl // 11 // --- /// YPL247C // cdna:known chromosome:SGD1:XVI:82625:84196:-1 gene:YPL247C // ensembl // 11 // --- --- No cerevisiae_gene -1.73322812408503 -1.59068684280294 1.0892987680332 -1.36584148991862 -1.02226575584231 Max fold change below threshold 4 1.73322812408503 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780166_at YNL331C.S1 Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role 1.73297552657522 217.750396728516 175.818099975586 AAD14 6081 // aldehyde metabolism // inferred from sequence similarity --- 18456 // aryl-alcohol dehydrogenase activity // inferred from sequence similarity 172.657867431641 230.214736938477 205.286056518555 178.978332519531 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL331C /GEN=AAD14 /DB_XREF=GI:6323998 /SEG=NC_001146:-16118,17248 /DEF=Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role /NOTE=Aad14p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: aryl-alcohol dehydrogenase activity [goid GO:0018456] [evidence ISS] [pmid 10572264]; go_process: aldehyde metabolism [goid GO:0006081] [evidence ISS] [pmid 10572264] --- --- --- --- --- --- S0005275 // AAD14 SGDID:S0005275, Chr XIV from 17248-16118, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019779 // cdna:Genscan chromosome:SGD1:XIV:16118:17248:-1 // ensembl // 11 // --- /// GENEFINDER00000020501 // cdna:GeneFinder chromosome:SGD1:XIV:16118:17248:-1 // ensembl // 11 // --- /// YNL331C // cdna:known chromosome:SGD1:XIV:16118:17248:-1 gene:YNL331C // ensembl // 11 // --- --- No cerevisiae_gene -1.73297552657522 1.33335793128352 1.72129450144786 1.18897597643404 1.03660687567795 Max fold change below threshold 4 1.73297552657522 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772995_at YOR189W.S1 Protein that associates with the INO80 chromatin remodeling complex under low-salt conditions 1.73267146607064 200.334129333496 296.384521484375 IES4 --- 5634 // nucleus // inferred from direct assay --- 279.750061035156 186.235153198242 214.43310546875 313.018981933594 0.00122069998178631 0.00195312988944352 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR189W /GEN=IES4 /DB_XREF=GI:6324763 /SEG=NC_001147:+689624,689974 /DEF=Protein that associates with the INO80 chromatin remodeling complex under low-salt conditions /NOTE=Ies4p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005715 // IES4 SGDID:S0005715, Chr XV from 689624-689974, Verified ORF // sgd // 11 // --- /// GENSCAN00000017606 // cdna:Genscan chromosome:SGD1:XV:689624:689974:1 // ensembl // 11 // --- /// GENEFINDER00000022739 // cdna:GeneFinder chromosome:SGD1:XV:689624:689974:1 // ensembl // 11 // --- /// YOR189W // cdna:known chromosome:SGD1:XV:689624:689974:1 gene:YOR189W // ensembl // 11 // --- --- No cerevisiae_gene -1.73267146607064 -1.5021334921521 1.62149942455696 -1.30460294563017 1.1189237306163 Max fold change below threshold 4 1.73267146607064 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779214_at YKL073W.S1 Molecular chaperone of the endoplasmic reticulum lumen, involved in polypeptide translocation and folding; member of the Hsp70 family; localizes to the lumen of the ER; regulated by the unfolded protein response pathway 1.73224439787068 236.253700256348 363.711227416992 LHS1 6986 // response to unfolded protein // inferred from genetic interaction /// 6986 // response to unfolded protein // inferred from mutant phenotype /// 15031 // protein transport // inferred from genetic interaction /// 15031 // protein transport // inferred from mutant phenotype 5788 // endoplasmic reticulum lumen // inferred from direct assay /// 5788 // endoplasmic reticulum lumen // traceable author statement /// 5788 // endoplasmic reticulum lumen // inferred from sequence similarity 51082 // unfolded protein binding // inferred from mutant phenotype /// 51082 // unfolded protein binding // inferred from genetic interaction /// 51082 // unfolded protein binding // inferred from physical interaction /// 51082 // unfolded protein binding // inferred from sequence similarity 337.578765869141 194.879409790039 277.627990722656 389.843688964844 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL073W /GEN=LHS1 /DB_XREF=GI:6322777 /SEG=NC_001143:+296075,298720 /DEF=Lumen HSP Seventy Required for efficient translocation of protein precursors across the ER membrane /NOTE=Lhs1p; go_component: endoplasmic reticulum lumen [goid GO:0005788] [evidence TAS] [pmid 11101517]; go_component: endoplasmic reticulum lumen [goid GO:0005788] [evidence IDA,ISS] [pmid 8654361]; go_function: chaperone activity [goid GO:0003754] [evidence IPI] [pmid 10409721]; go_function: chaperone activity [goid GO:0003754] [evidence IGI,IMP,ISS] [pmid 8654361]; go_process: protein transport [goid GO:0015031] [evidence IGI,IMP] [pmid 8940034]; go_process: response to unfolded protein [goid GO:0006986] [evidence IGI,IMP] [pmid 8654361] --- --- --- --- --- S0001556 // span:7-29 // numtm:1 S0001556 // LHS1 SGDID:S0001556, Chr XI from 296075-298720, Verified ORF // sgd // 11 // --- /// GENSCAN00000018362 // cdna:Genscan chromosome:SGD1:XI:296075:298720:1 // ensembl // 11 // --- /// GENEFINDER00000023125 // cdna:GeneFinder chromosome:SGD1:XI:296075:298720:1 // ensembl // 11 // --- /// YKL073W // cdna:known chromosome:SGD1:XI:296075:298720:1 gene:YKL073W // ensembl // 11 // --- --- No cerevisiae_gene -1.42450018846477 -1.73224439787068 1.10316177837909 -1.21593923217336 1.15482289877191 Max fold change below threshold 4 1.73224439787068 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776153_at YMR206W.S1 Hypothetical protein 1.73100349883412 1042.08129882813 752.894683837891 --- --- --- --- 711.662841796875 852.271728515625 1231.89086914063 794.126525878906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR206W /GEN=PFK2 /DB_XREF=GI:6323862 /SEG=NC_001145:+675895,676836 /DEF=Hypothetical ORF /NOTE=Ymr206wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004819 // YMR206W SGDID:S0004819, Chr XIII from 675895-676836, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018887 // cdna:Genscan chromosome:SGD1:XIII:675895:676836:1 // ensembl // 11 // --- /// GENEFINDER00000021906 // cdna:GeneFinder chromosome:SGD1:XIII:675895:676836:1 // ensembl // 11 // --- /// YMR206W // cdna:known chromosome:SGD1:XIII:675895:676836:1 gene:YMR206W // ensembl // 11 // --- --- No cerevisiae_gene 1.40182646757035 1.19757795189043 1.02484244268639 1.73100349883412 1.11587465192621 Max fold change below threshold 4 1.73100349883412 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769478_at YPL199C.S1 Hypothetical protein 1.7309822562528 1236.36614990234 1089.64361572266 --- --- 5737 // cytoplasm // inferred from direct assay --- 1031.32446289063 1140.89611816406 1331.83618164063 1147.96276855469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL199C /GEN=CSM4 /DB_XREF=GI:6325057 /SEG=NC_001148:-172032,172754 /DEF=Hypothetical ORF /NOTE=Ypl199cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006120 // YPL199C SGDID:S0006120, Chr XVI from 172754-172032, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020981 // cdna:GeneFinder chromosome:SGD1:XVI:169769:172754:-1 // ensembl // 11 // --- /// GENSCAN00000017035 // cdna:Genscan chromosome:SGD1:XVI:172032:172754:-1 // ensembl // 11 // --- /// YPL199C // cdna:known chromosome:SGD1:XVI:172032:172754:-1 gene:YPL199C // ensembl // 11 // --- --- No cerevisiae_gene 1.7309822562528 1.10624363060906 -1.00690840893738 1.29138426321016 1.11309564531917 Max fold change below threshold 4 1.7309822562528 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774523_at YGR226C.S1 --- 1.73083131513544 24.8200654983521 33.8361873626709 --- --- --- --- 30.1662445068359 29.0206146240234 20.6195163726807 37.5061302185059 0.00805663969367743 0.00585938012227416 0.00292969006113708 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR226C /GEN=AMA1 /DB_XREF=GI:6321665 /SEG=NC_001139:-946402,947001 /DEF=Ygr226cp /NOTE=go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003458 // span:21-43 // numtm:1 S0003458 // YGR226C SGDID:S0003458, Chr VII from 947003-946404, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// YGR226C // cdna:known chromosome:SGD1:VII:946404:947003:-1 gene:YGR226C // ensembl // 10 // --- S0003457 // sgd // 7 // Negative Strand Matching Probes /// YGR225W // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene -1.73083131513544 -1.03947641694205 1.66605154339332 -1.46299476484347 1.2433145335677 Max fold change below threshold 4 1.73083131513544 Max fold change below threshold PMPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1773241_at YER180C.S1 Protein required for sporulation, transcript is induced 7.5 hours after induction of meiosis, expected to play significant role in the formation of reproductive cells 1.73075281356712 311.275604248047 544.850692749023 ISC10 30435 // sporulation // inferred from mutant phenotype --- --- 507.089447021484 292.98779296875 329.563415527344 582.611938476563 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER180C /GEN=ISC10 /DB_XREF=GI:6321028 /SEG=NC_001137:-549719,550522 /DEF=Protein required for sporulation, transcript is induced 7.5 hours after induction of meiosis /NOTE=Isc10p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: sporulation [goid GO:0030435] [evidence TAS] [pmid 8455558] --- --- --- --- --- --- S0000982 // ISC10 SGDID:S0000982, Chr V from 550522-549719, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016959 // cdna:Genscan chromosome:SGD1:V:549719:550522:-1 // ensembl // 11 // --- /// GENEFINDER00000019685 // cdna:GeneFinder chromosome:SGD1:V:549719:550522:-1 // ensembl // 11 // --- /// YER180C // cdna:known chromosome:SGD1:V:549719:550522:-1 gene:YER180C // ensembl // 11 // --- --- No cerevisiae_gene 1.12412499359816 -1.73075281356712 -1.42235599981579 -1.53867032300923 1.14893327380145 Max fold change below threshold 4 1.73075281356712 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769460_at YJL185C.S1 Hypothetical protein 1.73071858646439 1017.36932373047 756.982055664063 --- --- --- --- 720.488830566406 855.6083984375 1179.13024902344 793.475280761719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL185C /GEN=MNN5 /DB_XREF=GI:6322276 /SEG=NC_001142:-82093,82974 /DEF=Hypothetical ORF /NOTE=Yjl185cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003721 // YJL185C SGDID:S0003721, Chr X from 82974-82093, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000023998 // cdna:Genscan chromosome:SGD1:X:82093:82974:-1 // ensembl // 11 // --- /// YJL185C // cdna:known chromosome:SGD1:X:82093:82974:-1 gene:YJL185C // ensembl // 11 // --- --- No cerevisiae_gene -1.73071858646439 1.18753874055878 1.69012008906103 1.63656978290208 1.10130129309282 Max fold change below threshold 4 1.73071858646439 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779963_at YLR287C.S1 Hypothetical protein 1.73053309330198 77.2474746704102 136.834636688232 --- --- 5737 // cytoplasm // inferred from direct assay --- 115.896553039551 73.750358581543 80.7445907592773 157.772720336914 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR287C /GEN=CTS1 /DB_XREF=GI:6323317 /SEG=NC_001144:-710993,712060 /DEF=Hypothetical ORF /NOTE=Ylr287cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004277 // YLR287C SGDID:S0004277, Chr XII from 712060-710993, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018043 // cdna:Genscan chromosome:SGD1:XII:710993:712060:-1 // ensembl // 11 // --- /// YLR287C // cdna:known chromosome:SGD1:XII:710993:712060:-1 gene:YLR287C // ensembl // 11 // --- --- No cerevisiae_gene 1.73053309330198 -1.57147104459714 1.09531595881795 -1.43534758117818 1.36132366493309 Max fold change below threshold 4 1.73053309330198 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771141_at YPR125W.S1 Hypothetical protein 1.73031602384985 323.576766967773 556.858596801758 --- --- 5739 // mitochondrion // inferred from direct assay --- 498.412017822266 288.046813964844 359.106719970703 615.30517578125 0.000244141003349796 0.00292969006113708 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR125W /GEN=CTR1 /DB_XREF=GI:6325382 /SEG=NC_001148:+787955,789319 /DEF=Hypothetical ORF /NOTE=Ypr125wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0006329 // span:134-156 // numtm:1 S0006329 // YPR125W SGDID:S0006329, Chr XVI from 787957-789321, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000017278 // cdna:Genscan chromosome:SGD1:XVI:787957:789321:1 // ensembl // 10 // --- /// GENEFINDER00000020879 // cdna:GeneFinder chromosome:SGD1:XVI:788209:789321:1 // ensembl // 10 // --- /// YPR125W // cdna:known chromosome:SGD1:XVI:787957:789321:1 gene:YPR125W // ensembl // 10 // --- YPR126C // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene 1.05401658649158 -1.73031602384985 1.18096432364385 -1.38792172383443 1.23453117858139 Max fold change below threshold 4 1.73031602384985 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769485_s_at YAR033W.S1 Putative integral membrane protein, involved in vesicle formation; forms complex with Mst28p; member of DUP240 gene family; binds COPI and COPII vesicles /// Putative integral membrane protein, involved in vesicle formation; forms complex with Mst27p; member of DUP240 gene family; binds COPI and COPII vesicles 1.73018550887621 46.0209941864014 75.2144088745117 MST27 /// MST28 16050 // vesicle organization and biogenesis // inferred from genetic interaction /// 16050 // vesicle organization and biogenesis // inferred from physical interaction 5783 // endoplasmic reticulum // inferred from direct assay /// 5794 // Golgi apparatus // inferred from direct assay /// 16021 // integral to membrane // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from physical interaction /// 5794 // Golgi apparatus // inferred from physical interaction 5515 // protein binding // inferred from direct assay 72.2116165161133 41.7363433837891 50.3056449890137 78.2172012329102 0.00292969006113708 0.00805663969367743 0.00585938012227416 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR033W /GEN=MST28 /DB_XREF=GI:6319336 /SEG=NC_001133:+188103,188807 /DEF=Putative integral membrane protein, involved in vesicle formation; forms complex with Mst27p; member of DUP240 gene family; binds COPI and COPII vesicles /NOTE=Mst28p; go_component: Golgi apparatus [goid GO:0005794] [evidence IPI] [pmid 12925749]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IPI] [pmid 12925749]; go_component: integral to membrane [goid GO:0016021] [evidence IDA] [pmid 12925749]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 12925749]; go_process: vesicle organization and biogenesis [goid GO:0016050] [evidence IGI,IPI] [pmid 12925749] --- --- --- --- --- S0000079 // span:45-67,74-96 // numtm:2 /// S0003019 // span:45-67,74-96 // numtm:2 S0000079 // MST28 SGDID:S0000079, Chr I from 188101-188805, Verified ORF // sgd // 11 // --- /// S0003019 // MST27 SGDID:S0003019, Chr VII from 403690-404394, Verified ORF // sgd // 11 // --- /// GENSCAN00000020394 // cdna:Genscan chromosome:SGD1:I:188101:188805:1 // ensembl // 11 // --- /// GENSCAN00000019305 // cdna:Genscan chromosome:SGD1:VII:403690:404394:1 // ensembl // 11 // --- /// YAR033W // cdna:known chromosome:SGD1:I:188101:188805:1 gene:YAR033W // ensembl // 11 // --- /// YGL051W // cdna:known chromosome:SGD1:VII:403690:404394:1 gene:YGL051W // ensembl // 11 // --- --- No cerevisiae_gene -1.56305166048583 -1.73018550887621 1.64696799899334 -1.4354575223493 1.08316646277343 Max fold change below threshold 4 1.73018550887621 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1769519_at YKL096W.S1 Cell wall mannoprotein, linked to a beta-1,3- and beta-1,6-glucan heteropolymer through a phosphodiester bond; involved in cell wall organization 1.72996474493273 5178.64721679688 5900.296875 CWP1 7047 // cell wall organization and biogenesis // inferred from direct assay /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 9277 // cell wall (sensu Fungi) // inferred from direct assay 5199 // structural constituent of cell wall // inferred from direct assay 6758.50048828125 6062.03076171875 4295.263671875 5042.09326171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL096W /GEN=CWP1 /DB_XREF=GI:6322754 /SEG=NC_001143:+260777,261496 /DEF=cell wall protein, involved in O and N glycosylation, acceptor of B1-6 glucan. /NOTE=Cwp1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 9335273]; go_function: structural constituent of cell wall [goid GO:0005199] [evidence IDA] [pmid 7768807]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IDA,IMP] [pmid 7768807] --- --- --- --- --- --- S0001579 // CWP1 SGDID:S0001579, Chr XI from 260777-261496, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023120 // cdna:GeneFinder chromosome:SGD1:XI:260777:261496:1 // ensembl // 11 // --- /// GENSCAN00000018344 // cdna:Genscan chromosome:SGD1:XI:260825:261496:1 // ensembl // 11 // --- /// YKL096W // cdna:known chromosome:SGD1:XI:260777:261496:1 gene:YKL096W // ensembl // 11 // --- --- No cerevisiae_gene -1.72996474493273 -1.11489049692071 -1.56169553083499 -1.57347744040379 -1.34041560468428 Max fold change below threshold 4 1.72996474493273 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770374_at YOR321W.S1 Protein O-mannosyltransferase, transfers mannose residues from dolichyl phosphate-D-mannose to protein serine/threonine residues; acts in a complex with Pmt5p, can instead interact with Pmt1p in some conditions; target for new antifungals 1.729455023325 261.697174072266 360.466949462891 PMT3 6493 // O-linked glycosylation // inferred from mutant phenotype /// 6493 // O-linked glycosylation // inferred from sequence similarity 5783 // endoplasmic reticulum // traceable author statement 4169 // dolichyl-phosphate-mannose-protein mannosyltransferase activity // inferred from sequence similarity /// 4169 // dolichyl-phosphate-mannose-protein mannosyltransferase activity // inferred from mutant phenotype 350.534851074219 202.685150146484 320.709197998047 370.399047851563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR321W /GEN=PMT3 /DB_XREF=GI:6324897 /SEG=NC_001147:+916025,918286 /DEF=Transfers mannose residues from dolichyl phosphate-D-mannose to specific serine/threonine residues of proteins in the secretory pathway /NOTE=Pmt3p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS] [pmid 8918452]; go_function: dolichyl-phosphate-mannose-protein mannosyltransferase activity [goid GO:0004169] [evidence IMP,ISS] [pmid 8585318]; go_process: O-linked glycosylation [goid GO:0006493] [evidence IMP,ISS] [pmid 8585318] --- --- --- --- --- S0005848 // span:51-70,160-182,192-211,223-240,244-266,279-298,601-623,640-662,667-686,706-728 // numtm:10 S0005848 // PMT3 SGDID:S0005848, Chr XV from 916025-918286, Verified ORF // sgd // 11 // --- /// GENSCAN00000017775 // cdna:Genscan chromosome:SGD1:XV:916025:918286:1 // ensembl // 11 // --- /// GENEFINDER00000022925 // cdna:GeneFinder chromosome:SGD1:XV:916025:918286:1 // ensembl // 11 // --- /// YOR321W // cdna:known chromosome:SGD1:XV:916025:918286:1 gene:YOR321W // ensembl // 11 // --- --- No cerevisiae_gene -1.03909137900682 -1.729455023325 -1.44628280863524 -1.09299905728414 1.05666825057899 Max fold change below threshold 4 1.729455023325 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779942_at YCR073W-A.S1 Protein with a possible role in tRNA export; shows similarity to glucose-6-phosphate dehydrogenase non-catalytic domains but does not exhibit this enzymatic activity; homologous to Sol1p, Sol3p, and Sol4p 1.72941822730992 2856.18664550781 3198.4755859375 SOL2 6409 // tRNA-nucleus export // inferred from genetic interaction /// 6409 // tRNA-nucleus export // inferred from mutant phenotype /// 8033 // tRNA processing // inferred from genetic interaction /// 8033 // tRNA processing // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 17057 // 6-phosphogluconolactonase activity // inferred from direct assay 3366.57055664063 2642.64624023438 3069.72705078125 3030.38061523438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR073W-A /GEN=SOL2 /DB_XREF=GI:10383806 /SEG=NC_001135:+246959,247906 /DEF=multicopy suppressor of los1-1 /NOTE=Sol2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: 6-phosphogluconolactonase activity [goid GO:0017057] [evidence ISS] [pmid 10518023]; go_process: tRNA processing [goid GO:0008033] [evidence IGI,IMP] [pmid 8725220] --- --- --- ec // 6PGL_DROME // (Q9VZ64) Potential 6-phosphogluconolactonase (EC 3.1.1.31) (6PGL) // 4.0E-94 --- --- S0000718 // SOL2 SGDID:S0000718, Chr III from 246959-247906, Verified ORF // sgd // 11 // --- /// GENSCAN00000022510 // cdna:Genscan chromosome:SGD1:III:246959:247906:1 // ensembl // 11 // --- /// GENEFINDER00000023374 // cdna:GeneFinder chromosome:SGD1:III:246959:247906:1 // ensembl // 11 // --- /// YCR073W-A // cdna:known chromosome:SGD1:III:246959:247906:1 gene:YCR073W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.72941822730992 -1.27393916952806 -1.06672219403823 -1.09670029320158 -1.1109398402683 Max fold change below threshold 4 1.72941822730992 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778219_at YOR224C.S1 RNA polymerase subunit ABC14.5, common to RNA polymerases I, II, and III 1.72935710297985 1111.69213867188 1294.88366699219 RPB8 6360 // transcription from RNA polymerase I promoter // traceable author statement /// 6366 // transcription from RNA polymerase II promoter // traceable author statement /// 6383 // transcription from RNA polymerase III promoter // traceable author statement 5665 // DNA-directed RNA polymerase II, core complex // traceable author statement /// 5666 // DNA-directed RNA polymerase III complex // traceable author statement /// 5736 // DNA-directed RNA polymerase I complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 1253.32177734375 1077.83923339844 1145.54504394531 1336.44555664063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR224C /GEN=RPB8 /DB_XREF=GI:6324798 /SEG=NC_001147:-760825,761265 /DEF=RNA polymerase subunit, found in RNA polymerase complexes I, II, and III /NOTE=Rpb8p; go_component: DNA-directed RNA polymerase I complex [goid GO:0005736] [evidence TAS] [pmid 9774381]; go_component: DNA-directed RNA polymerase II, core complex [goid GO:0005665] [evidence TAS] [pmid 9774381]; go_component: DNA-directed RNA polymerase III complex [goid GO:0005666] [evidence TAS] [pmid 9774381]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 9774381]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence TAS]; go_process: transcription from Pol III promoter [goid GO:0006383] [evidence TAS] --- --- --- --- --- --- S0005750 // RPB8 SGDID:S0005750, Chr XV from 761265-760825, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022932 // cdna:GeneFinder chromosome:SGD1:XV:760775:761265:-1 // ensembl // 10 // --- /// GENSCAN00000017641 // cdna:Genscan chromosome:SGD1:XV:760825:761265:-1 // ensembl // 11 // --- /// YOR224C // cdna:known chromosome:SGD1:XV:760825:761265:-1 gene:YOR224C // ensembl // 11 // --- --- No cerevisiae_gene 1.72935710297985 -1.16280957169467 -1.01401007668373 -1.09408336579001 1.06632277584217 Max fold change below threshold 4 1.72935710297985 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773684_at YJL103C.S1 Hypothetical protein 1.72932229626684 2009.2119140625 1786.53186035156 --- 6119 // oxidative phosphorylation // inferred from sequence similarity --- --- 1844.41870117188 2153.2158203125 1865.2080078125 1728.64501953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL103C /GEN=PAM16 /DB_XREF=GI:6322358 /SEG=NC_001142:-228942,230798 /DEF=Hypothetical ORF /NOTE=Yjl103cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003639 // YJL103C SGDID:S0003639, Chr X from 230798-228942, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000024059 // cdna:Genscan chromosome:SGD1:X:228942:230798:-1 // ensembl // 10 // --- /// GENEFINDER00000024323 // cdna:GeneFinder chromosome:SGD1:X:228942:230798:-1 // ensembl // 10 // --- /// YJL103C // cdna:known chromosome:SGD1:X:228942:230798:-1 gene:YJL103C // ensembl // 10 // --- --- No cerevisiae_gene -1.72932229626684 1.16742246158339 -1.1411797653605 1.01127146814734 -1.06697365875153 Max fold change below threshold 4 1.72932229626684 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777533_at YJR044C.S1 Late endosomal protein involved in late endosome to vacuole trafficking; functional homolog of human obesity receptor gene-related protein (OB-RGRP) 1.72893133290828 1311.59893798828 2179.26525878906 VPS55 45324 // late endosome to vacuole transport // inferred from mutant phenotype 5770 // late endosome // inferred from direct assay --- 2250.57958984375 1317.31567382813 1305.88220214844 2107.95092773438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR044C /GEN=VPS55 /DB_XREF=GI:6322504 /SEG=NC_001142:-518677,519099 /DEF=Vacuolar Protein Sorting /NOTE=Vps55p; go_component: late endosome [goid GO:0005770] [evidence IDA] [pmid 12006663]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: late endosome to vacuole transport [goid GO:0045324] [evidence IMP] [pmid 12006663] --- --- --- --- --- S0003805 // span:12-34,39-56,77-96,101-123 // numtm:4 S0003805 // VPS55 SGDID:S0003805, Chr X from 519099-518677, reverse complement, Verified ORF // sgd // 11 // --- /// YJR044C // cdna:known chromosome:SGD1:X:518677:519099:-1 gene:YJR044C // ensembl // 11 // --- --- No cerevisiae_gene -1.72893133290828 -1.70845882620037 1.13136633423638 -1.72341700203977 -1.06766223076297 Max fold change below threshold 4 1.72893133290828 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779604_at YGL148W.S1 Bifunctional chorismate synthase and flavin reductase, catalyzes the conversion of 5-enolpyruvylshikimate 3-phosphate (EPSP) to form chorismate, which is a precursor to aromatic amino acids 1.72891141504091 1472.88275146484 1156.53564453125 ARO2 9073 // aromatic amino acid family biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 4107 // chorismate synthase activity // traceable author statement /// 42602 // flavin reductase activity // inferred from direct assay 1106.955078125 1277.48034667969 1668.28515625 1206.1162109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL148W /GEN=ARO2 /DB_XREF=GI:6321290 /SEG=NC_001139:+226402,227532 /DEF=Bifunctional chorismate synthase and flavin reductase, catalyzes the conversion of 5-enolpyruvylshikimate 3-phosphate (EPSP) to form chorismate, which is a precursor to aromatic amino acids /NOTE=Aro2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: chorismate synthase activity [goid GO:0004107] [evidence TAS]; go_function: flavin reductase activity [goid GO:0042602] [evidence IDA] [pmid 8971708]; go_process: aromatic amino acid family biosynthesis [goid GO:0009073] [evidence TAS] --- --- --- --- --- --- S0003116 // ARO2 SGDID:S0003116, Chr VII from 226404-227534, Verified ORF // sgd // 10 // --- /// GENSCAN00000019237 // cdna:Genscan chromosome:SGD1:VII:226497:227534:1 // ensembl // 10 // --- /// GENEFINDER00000021612 // cdna:GeneFinder chromosome:SGD1:VII:226497:227534:1 // ensembl // 10 // --- /// YGL148W // cdna:known chromosome:SGD1:VII:226404:227534:1 gene:YGL148W // ensembl // 10 // --- --- No cerevisiae_gene 1.72891141504091 1.15404895096875 -1.26730133920742 1.50709381908776 1.08958008755013 Max fold change below threshold 4 1.72891141504091 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770750_at YBL068W.S1 5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, involved in nucleotide, histidine, and tryptophan biosynthesis; one of a five related enzymes, which are active as heteromultimeric complexes 1.72881705479981 1428.81799316406 1037.21221923828 PRS4 105 // histidine biosynthesis // traceable author statement /// 162 // tryptophan biosynthesis // traceable author statement /// 6166 // purine ribonucleoside salvage // traceable author statement /// 6189 // 'de novo' IMP biosynthesis // traceable author statement /// 6207 // 'de novo' pyrimidine base biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 4749 // ribose-phosphate diphosphokinase activity // traceable author statement 962.436401367188 1193.75952148438 1663.87646484375 1111.98803710938 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL068W /GEN=PRS4 /DB_XREF=GI:37362615 /SEG=NC_001134:+92412,93395 /DEF=5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, involved in nucleotide, histidine, and tryptophan biosynthesis; one of a five related enzymes, which are active as heteromultimeric complexes /NOTE=Prs4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: ribose-phosphate diphosphokinase activity [goid GO:0004749] [evidence TAS] [pmid 10212224]; go_process: 'de novo' IMP biosynthesis [goid GO:0006189] [evidence TAS] [pmid 10212224]; go_process: 'de novo' pyrimidine base biosynthesis [goid GO:0006207] [evidence TAS] [pmid 10212224]; go_process: histidine biosynthesis [goid GO:0000105] [evidence TAS] [pmid 10212224]; go_process: purine ribonucleoside salvage [goid GO:0006166] [evidence TAS] [pmid 10212224]; go_process: tryptophan biosynthesis [goid GO:0000162] [evidence TAS] [pmid 10212224] --- --- --- --- --- --- S0000164 // PRS4 SGDID:S0000164, Chr II from 92412-93395, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022111 // cdna:GeneFinder chromosome:SGD1:II:92328:93395:1 // ensembl // 11 // --- /// GENSCAN00000021085 // cdna:Genscan chromosome:SGD1:II:92412:93395:1 // ensembl // 11 // --- /// YBL068W // cdna:known chromosome:SGD1:II:92412:93395:1 gene:YBL068W // ensembl // 11 // --- --- No cerevisiae_gene 1.72229407406816 1.24035159080494 1.00834908302966 1.72881705479981 1.15538859038347 Max fold change below threshold 4 1.72881705479981 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773870_at YPL023C.S1 Isozyme of methylenetetrahydrofolate reductase, catalyzes the reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate in the methionine biosynthesis pathway 1.72876578943475 1529.51184082031 1203.189453125 MET12 6555 // methionine metabolism // traceable author statement 5737 // cytoplasm // inferred from direct assay 4489 // methylenetetrahydrofolate reductase (NADPH) activity // inferred from direct assay 1146.84680175781 1278.380859375 1780.64282226563 1259.53210449219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL023C /GEN=MET12 /DB_XREF=GI:6325234 /SEG=NC_001148:-504335,506308 /DEF=Isozyme of methylenetetrahydrofolate reductase, catalyzes the reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate in the methionine biosynthesis pathway /NOTE=Met12p; go_component: cell [goid GO:0005623] [evidence TAS]; go_function: methylenetetrahydrofolate reductase (NADPH) activity [goid GO:0004489] [evidence IDA] [pmid 10600168]; go_process: methionine metabolism [goid GO:0006555] [evidence TAS] --- --- --- --- --- --- S0005944 // MET12 SGDID:S0005944, Chr XVI from 506310-504337, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017168 // cdna:Genscan chromosome:SGD1:XVI:504337:506199:-1 // ensembl // 11 // --- /// GENEFINDER00000020762 // cdna:GeneFinder chromosome:SGD1:XVI:504337:506310:-1 // ensembl // 11 // --- /// YPL023C // cdna:known chromosome:SGD1:XVI:504337:506310:-1 gene:YPL023C // ensembl // 11 // --- --- No cerevisiae_gene 1.04472074362353 1.11469191649275 1.72876578943475 1.55264227055991 1.09825663075631 Max fold change below threshold 4 1.72876578943475 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780186_at YLR167W.S1 Fusion protein that is cleaved to yield a ribosomal protein of the small (40S) subunit and ubiquitin; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes; interacts genetically with translation factor eIF2B 1.72873624245529 6269.13818359375 6893.1328125 RPS31 28 // ribosomal small subunit assembly and maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement /// 16567 // protein ubiquitination // inferred from mutant phenotype /// 42254 // ribosome biogenesis and assembly // inferred from direct assay 5737 // cytoplasm // inferred from direct assay /// 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement /// 31386 // protein tag // inferred from sequence similarity 8140.0390625 7829.61181640625 4708.66455078125 5646.2265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR167W /GEN=RPS31 /DB_XREF=GI:6323196 /SEG=NC_001144:+498949,499407 /DEF=Fusion protein that is cleaved to yield a ribosomal protein of the small (40S) subunit and ubiquitin; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes; interacts genetically with translation factor eIF2B /NOTE=Rps31p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: ribosomal chaperone activity [goid GO:0000005] [evidence IDA] [pmid 2538753]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: ribosomal small subunit assembly and maintenance [goid GO:0000028] [evidence IMP] [pmid 9830035] --- --- --- --- --- --- S0004157 // RPS31 SGDID:S0004157, Chr XII from 498949-499407, Verified ORF // sgd // 11 // --- /// GENSCAN00000017950 // cdna:Genscan chromosome:SGD1:XII:498949:499407:1 // ensembl // 11 // --- /// GENEFINDER00000024603 // cdna:GeneFinder chromosome:SGD1:XII:498949:499407:1 // ensembl // 11 // --- /// YLR167W // cdna:known chromosome:SGD1:XII:498949:499407:1 gene:YLR167W // ensembl // 11 // --- --- No cerevisiae_gene -1.27525185397958 -1.03964784632659 -1.38624378309477 -1.72873624245529 -1.44167772447583 Max fold change below threshold 4 1.72873624245529 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774804_at YNR007C.S1 Protein involved in autophagy; E2-like enzyme that plays a role in formation of Atg8p-phosphatidylethanolamine conjugates, which are involved in membrane dynamics during autophagy 1.7287348488231 982.796539306641 1307.10772705078 ATG3 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6914 // autophagy // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 1245.37292480469 720.395568847656 1245.19750976563 1368.84252929688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR007C /GEN=ATG3 /DB_XREF=GI:6324334 /SEG=NC_001146:-639181,640113 /DEF=Protein involved in autophagocytosis during starvation /NOTE=Atg3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: autophagy [goid GO:0006914] [evidence IMP] [pmid 8224160]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 9023185] --- --- --- --- --- --- S0005290 // ATG3 SGDID:S0005290, Chr XIV from 640114-639182, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020042 // cdna:Genscan chromosome:SGD1:XIV:639182:640114:-1 // ensembl // 11 // --- /// GENEFINDER00000020536 // cdna:GeneFinder chromosome:SGD1:XIV:639182:639988:-1 // ensembl // 11 // --- /// YNR007C // cdna:known chromosome:SGD1:XIV:639182:640114:-1 gene:YNR007C // ensembl // 11 // --- --- No cerevisiae_gene -1.65078583518557 -1.7287348488231 1.39406004354988 -1.00014087326523 1.09914267608761 Max fold change below threshold 4 1.7287348488231 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772359_at SPCC364.03.S1 --- 1.72840700958632 --- --- --- --- 12.6174621582031 13.57297706604 14.3632297515869 8.0231761932373 0.0461426004767418 0.219482004642487 0.0805663987994194 0.219482004642487 P A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC364.03 /GEN=rpl1702 /DEF=60S ribosomal protein L17 --- --- --- --- --- --- SPCC364.03 // |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.72840700958632 1.07572956398492 1.47484605114536 1.13836123076849 -1.57262683185723 Max fold change below threshold 4 1.72840700958632 Max fold change below threshold PPAAAA No 4 0 PAAA 3 1 0 No No x = 1
1775305_at YPL119C-A.S1 Identified by expression profiling and mass spectrometry 1.72825375129137 754.37890625 972.789215087891 --- --- --- --- 942.120971679688 773.605590820313 735.152221679688 1003.45745849609 0.00195312988944352 0.00195312988944352 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL119C-A /GEN=VPS30 /DB_XREF=GI:33438893 /SEG=NC_001148:-324023,324286 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Ypl119c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028859 // span:20-42 // numtm:1 S0028859 // YPL119C-A SGDID:S0028859, Chr XVI from 324286-324023, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YPL119C-A // cdna:known chromosome:SGD1:XVI:324023:324286:-1 gene:YPL119C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.72825375129137 -1.21783113108152 1.18514263354261 -1.28153182959458 1.06510468258344 Max fold change below threshold 4 1.72825375129137 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770936_at YDR363W-A.S1 Component of the lid subcomplex of the regulatory subunit of the 26S proteasome; ortholog of human DSS1 1.72774258055386 1984.96673583984 1199.09832763672 SEM1 74 // regulation of cell cycle // inferred from mutant phenotype /// 6511 // ubiquitin-dependent protein catabolism // inferred from mutant phenotype /// 6887 // exocytosis // inferred from genetic interaction /// 6887 // exocytosis // inferred from physical interaction /// 30447 // filamentous growth // inferred from mutant phenotype /// 43161 // proteasomal ubiquitin-dependent protein catabolism // inferred from direct assay /// 43161 // proteasomal ubiquitin-dependent protein catabolism // inferred from mutant phenotype 5634 // nucleus // inferred from physical interaction /// 5792 // microsome // inferred from direct assay /// 5829 // cytosol // inferred from direct assay /// 8541 // proteasome regulatory particle, lid subcomplex (sensu Eukaryota) // inferred from direct assay --- 1195.48168945313 2065.48461914063 1904.44885253906 1202.71496582031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR363W-A /GEN=SEM1 /DB_XREF=GI:6320571 /SEG=NC_001136:+1202116,1202385 /DEF=Suppressor of Exocyst Mutations; Homolog of DSS1; similar to hypothetical protein from S. pombe /NOTE=Sem1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 9927667]; go_component: microsome [goid GO:0005792] [evidence IDA] [pmid 9927667]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: exocytosis [goid GO:0006887] [evidence IGI,IPI] [pmid 9927667]; go_process: filamentous growth [goid GO:0030447] [evidence IMP] [pmid 9927667]; go_process: regulation of cell cycle [goid GO:0000074] [evidence IMP] [pmid 10373512] --- --- --- --- --- --- S0007235 // SEM1 SGDID:S0007235, Chr IV from 1202118-1202387, Verified ORF // sgd // 11 // --- /// AF059310 // Saccharomyces cerevisiae Sem1p (SEM1) mRNA, complete cds. // gb // 11 // --- /// GENEFINDER00000023542 // cdna:GeneFinder chromosome:SGD1:IV:1202118:1202387:1 // ensembl // 11 // --- /// YDR363W-A // cdna:known chromosome:SGD1:IV:1202118:1202387:1 gene:YDR363W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.22244608648556 1.72774258055386 1.43802980909769 1.59303891422231 1.00605051204966 Max fold change below threshold 4 1.72774258055386 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774358_at YDR388W.S1 Actin-associated protein, subunit of a complex (Rvs161p-Rvs167p) involved in regulation of actin cytoskeleton, endocytosis, and viability following starvation or osmotic stress; homolog of mammalian amphiphysin 1.72755921103962 2191.69677734375 2166.23937988281 RVS167 6897 // endocytosis // inferred from mutant phenotype /// 6970 // response to osmotic stress // inferred from mutant phenotype /// 7121 // bipolar bud site selection // inferred from mutant phenotype /// 16192 // vesicle-mediated transport // inferred from genetic interaction /// 16192 // vesicle-mediated transport // inferred from physical interaction 30479 // actin cortical patch // traceable author statement /// 30479 // actin cortical patch // inferred from direct assay 8092 // cytoskeletal protein binding // inferred from sequence similarity /// 8092 // cytoskeletal protein binding // inferred from physical interaction 2170.38818359375 1924.94799804688 2458.44555664063 2162.09057617188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR388W /GEN=RVS167 /DB_XREF=GI:6320596 /SEG=NC_001136:+1250174,1251622 /DEF=The BAR adaptor proteins encoded by RVS167 and RVS161 form a complex that regulates actin, endocytosis, and viability following starvation or osmotic stress. /NOTE=Rvs167p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10652251]; go_function: cytoskeletal protein binding [goid GO:0008092] [evidence IPI,ISS] [pmid 10388809]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 10652251]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251]; go_process: response to osmotic stress [goid GO:0006970] [evidence IMP] [pmid 10652251] --- --- --- --- scop // a.140.4.Recombination endonuclease VII, C-terminal and dimerizat // All alpha proteins; LEM/SAP HeH motif; Recombination endonuclease VII, C-terminal and dimerization domains; Recombination endonuclease VII, C-terminal and dimerization domains // 6.09999990463257 /// scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 4.59999990463257 --- S0002796 // RVS167 SGDID:S0002796, Chr IV from 1250176-1251624, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023664 // cdna:GeneFinder chromosome:SGD1:IV:1250242:1251624:1 // ensembl // 11 // --- /// GENSCAN00000025407 // cdna:Genscan chromosome:SGD1:IV:1250242:1251624:1 // ensembl // 11 // --- /// YDR388W // cdna:known chromosome:SGD1:IV:1250176:1251624:1 gene:YDR388W // ensembl // 11 // --- --- No cerevisiae_gene -1.72755921103962 -1.12750483950523 -1.0878754018847 1.13272159110722 -1.00383777049552 Max fold change below threshold 4 1.72755921103962 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774768_at YGR185C.S1 Cytoplasmic tyrosyl-tRNA synthetase, class I aminoacyl-tRNA synthetase that aminoacylates tRNA(Tyr), required for cytoplasmic protein synthesis, interacts with positions 34 and 35 of the anticodon of tRNATyr 1.72749125359541 1805.26556396484 1713.18743896484 TYS1 6437 // tyrosyl-tRNA aminoacylation // inferred from direct assay 5634 // nucleus // inferred from mutant phenotype /// 5634 // nucleus // inferred from direct assay /// 5634 // nucleus // inferred from sequence similarity /// 5737 // cytoplasm // inferred from direct assay 4831 // tyrosine-tRNA ligase activity // inferred from direct assay /// 4831 // tyrosine-tRNA ligase activity // inferred from sequence similarity 1684.80920410156 1528.13659667969 2082.39453125 1741.56567382813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR185C /GEN=TYS1 /DB_XREF=GI:6321624 /SEG=NC_001139:-866339,867523 /DEF=tyrosyl-tRNA synthetase, cytoplasmic /NOTE=Tys1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11359929]; go_component: nucleus [goid GO:0005634] [evidence IDA,IMP,ISS] [pmid 11359929]; go_function: tyrosine-tRNA ligase activity [goid GO:0004831] [evidence IDA,ISS] [pmid 8509419]; go_process: tyrosyl-tRNA aminoacylation [goid GO:0006437] [evidence IDA] [pmid 8509419] --- --- --- --- --- --- S0003417 // TYS1 SGDID:S0003417, Chr VII from 867525-866341, reverse complement, Verified ORF // sgd // 11 // --- /// L12221 // Saccharomyces cerevisiae tyrosyl-tRNA synthetase (TyrRS) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000019485 // cdna:Genscan chromosome:SGD1:VII:866341:867525:-1 // ensembl // 11 // --- /// GENEFINDER00000021395 // cdna:GeneFinder chromosome:SGD1:VII:866341:867525:-1 // ensembl // 11 // --- /// YGR185C // cdna:known chromosome:SGD1:VII:866341:867525:-1 gene:YGR185C // ensembl // 11 // --- --- No cerevisiae_gene 1.72749125359541 -1.10252526361995 -1.24199003021387 1.23598240452423 1.03368717928914 Max fold change below threshold 4 1.72749125359541 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779079_at YJL059W.S1 Vacuolar membrane protein involved in the ATP-dependent transport of arginine into the vacuole and possibly in balancing ion homeostasis; homolog of human CLN3 involved in Batten disease (juvenile onset neuronal ceroid lipofuscinosis) 1.72730131982819 135.438980102539 96.0260391235352 YHC3 6886 // intracellular protein transport // inferred from mutant phenotype /// 15802 // basic amino acid transport // inferred from genetic interaction /// 15802 // basic amino acid transport // inferred from mutant phenotype 324 // vacuole (sensu Fungi) // inferred from direct assay 15174 // basic amino acid transporter activity // inferred from genetic interaction /// 15174 // basic amino acid transporter activity // inferred from mutant phenotype 89.728157043457 115.890396118164 154.987564086914 102.323921203613 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL059W /GEN=YHC3 /DB_XREF=GI:6322402 /SEG=NC_001142:+324880,326106 /DEF=Homolog of human CLN3. vacuolar/lysosomal membrane protein. /NOTE=Yhc3p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 9753630]; go_function: basic amino acid transporter activity [goid GO:0015174] [evidence IGI,IMP] [pmid 14660799]; go_process: basic amino acid transport [goid GO:0015802] [evidence IGI,IMP] [pmid 14660799]; go_process: intracellular protein transport [goid GO:0006886] [evidence IMP] [pmid 12615067]; go_process: regulation of pH [goid GO:0006885] [evidence IMP] [pmid 11053386] --- --- --- --- --- S0003595 // span:9-31,41-62,69-86,90-112,125-147,151-170,228-250,277-296,303-325,331-353,366-388 // numtm:11 S0003595 // YHC3 SGDID:S0003595, Chr X from 324880-326106, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024512 // cdna:GeneFinder chromosome:SGD1:X:325108:326106:1 // ensembl // 11 // --- /// YJL059W // cdna:known chromosome:SGD1:X:324880:326106:1 gene:YJL059W // ensembl // 11 // --- --- No cerevisiae_gene -1.121309705789 1.29157223258287 1.02340426273647 1.72730131982819 1.14037694047428 Max fold change below threshold 4 1.72730131982819 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769932_at YDR252W.S1 Beta3 subunit of the heterotrimeric nascent polypeptide-associated complex (alpha, beta1, beta3) which binds ribosomes via its beta-subunits in close proximity to nascent polypeptides 1.72709575514391 55.0988311767578 38.1308612823486 BTT1 6444 // nascent polypeptide association // inferred from physical interaction 5830 // cytosolic ribosome (sensu Eukaryota) // inferred from curator /// 5854 // nascent polypeptide-associated complex // inferred from direct assay 51082 // unfolded protein binding // inferred from mutant phenotype 35.4076118469238 49.0453262329102 61.1523361206055 40.8541107177734 0.000732421991415322 0.000732421875 0.000732421991415322 0.00585938012227416 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR252W /GEN=BTT1 /DB_XREF=GI:6320458 /SEG=NC_001136:+963404,963853 /DEF=beta subunit of the nascent-polypeptide-associated complex (NAC); homologous to human BTF3b; Negative effect on expression of several genes transcribed by RNA polymerase II /NOTE=Btt1p; go_component: cytosolic ribosome (sensu Eukarya) [goid GO:0005830] [evidence IC] [pmid 9482879]; go_component: nascent polypeptide-associated complex [goid GO:0005854] [evidence IDA] [pmid 10219998]; go_function: chaperone activity [goid GO:0003754] [evidence IMP] [pmid 10219998]; go_process: nascent polypeptide association [goid GO:0006444] [evidence IPI] [pmid 10219998] --- --- --- --- --- --- S0002660 // BTT1 SGDID:S0002660, Chr IV from 963406-963855, Verified ORF // sgd // 11 // --- /// YDR252W // cdna:known chromosome:SGD1:IV:963406:963855:1 gene:YDR252W // ensembl // 11 // --- --- No cerevisiae_gene 1.66373949796663 1.38516334976066 -1.29685421902335 1.72709575514391 1.15382282471905 Max fold change below threshold 4 1.72709575514391 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1778798_s_at YNL301C.S1 Protein component of the large (60S) ribosomal subunit, identical to Rpl18Ap and has similarity to rat L18 ribosomal protein /// Protein component of the large (60S) ribosomal subunit, identical to Rpl18Bp and has similarity to rat L18 ribosomal protein; intron of RPL18A pre-mRNA forms stem-loop structures that are a target for Rnt1p cleavage leading to degradation 1.72702173846244 3174.06530761719 4532.89855957031 RPL18B /// RPL18A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 5035.8828125 3018.32690429688 3329.8037109375 4029.91430664063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL301C /GEN=RPL18B /DB_XREF=GI:6324028 /SEG=NC_001146:-63569,64561 /DEF=Protein component of the large (60S) ribosomal subunit, identical to Rpl18Ap and has similarity to rat L18 ribosomal protein /NOTE=Rpl18bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0005245 // RPL18B SGDID:S0005245, Chr XIV from 64561-64450,64017-63569, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0005480 // RPL18A SGDID:S0005480, Chr XV from 94401-94290,93842-93394, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020505 // cdna:GeneFinder chromosome:SGD1:XIV:63569:64364:-1 // ensembl // 10 // --- /// GENEFINDER00000022831 // cdna:GeneFinder chromosome:SGD1:XV:93394:94401:-1 // ensembl // 11 // --- /// YNL301C // cdna:known chromosome:SGD1:XIV:63569:64561:-1 gene:YNL301C // ensembl // 11 // --- /// YOL120C // cdna:known chromosome:SGD1:XV:93394:94401:-1 gene:YOL120C // ensembl // 11 // --- --- No cerevisiae_gene 1.06087591317312 -1.66843518683511 -1.72702173846244 -1.51236626830539 -1.24962528463737 Max fold change below threshold 4 1.72702173846244 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770343_s_at YFL059W.S1 Member of a stationary phase-induced gene family; transcription of SNZ2 is induced prior to diauxic shift, and also in the absence of thiamin in a Thi2p-dependent manner; forms a coregulated gene pair with SNO2; interacts with Thi11p /// Member of a stationary phase-induced gene family; transcription of SNZ2 is induced prior to diauxic shift, and also in the absence of thiamin in a Thi2p-dependent manner; forms a coregulated gene pair with SNO3 1.72684971210501 157.432971954346 118.795227050781 SNZ2 /// SNZ3 8614 // pyridoxine metabolism // inferred from sequence similarity /// 8614 // pyridoxine metabolism // inferred from direct assay /// 9228 // thiamin biosynthesis // inferred from mutant phenotype --- 5515 // protein binding // inferred from physical interaction 117.385597229004 122.719505310059 192.146438598633 120.204856872559 0.00122069998178631 0.00122069998178631 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL059W /GEN=SNZ3 /DB_XREF=GI:14318460 /SEG=NC_001138:+11363,12259 /DEF=Snooze: stationary phase-induced gene family /NOTE=Snz3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 10655498]; go_process: pyridoxine metabolism [goid GO:0008614] [evidence ISS] [pmid 10438537]; go_process: pyridoxine metabolism [goid GO:0008614] [evidence IDA] [pmid 9791124]; go_process: thiamin biosynthesis [goid GO:0009228] [evidence IMP] [pmid 12271461] --- --- --- --- --- --- S0001835 // SNZ3 SGDID:S0001835, Chr VI from 11363-12259, Verified ORF // sgd // 11 // --- /// S0005277 // SNZ2 SGDID:S0005277, Chr XIV from 13267-14163, Verified ORF // sgd // 11 // --- /// GENSCAN00000023191 // cdna:Genscan chromosome:SGD1:VI:11363:12259:1 // ensembl // 11 // --- /// GENEFINDER00000018585 // cdna:GeneFinder chromosome:SGD1:VI:11420:12259:1 // ensembl // 11 // --- /// GENSCAN00000019777 // cdna:Genscan chromosome:SGD1:XIV:13267:14163:1 // ensembl // 11 // --- /// GENEFINDER00000020678 // cdna:GeneFinder chromosome:SGD1:XIV:13324:14163:1 // ensembl // 11 // --- /// YFL059W // cdna:known chromosome:SGD1:VI:11363:12259:1 gene:YFL059W // ensembl // 11 // --- /// YNL333W // cdna:known chromosome:SGD1:XIV:13267:14163:1 gene:YNL333W // ensembl // 11 // --- --- No cerevisiae_gene -1.72684971210501 1.04543920384584 1.02389385391167 1.63688257447615 1.02401708310138 Max fold change below threshold 4 1.72684971210501 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775992_at YBL098W.S1 Kynurenine 3-mono oxygenase, required for biosynthesis of nicotinic acid from tryptophan via kynurenine pathway 1.72675105534324 849.058502197266 636.780303955078 BNA4 9435 // NAD biosynthesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 4502 // kynurenine 3-monooxygenase activity // traceable author statement 634.084350585938 827.899597167969 870.217407226563 639.476257324219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL098W /GEN=BNA4 /DB_XREF=GI:6319372 /SEG=NC_001134:+39142,40524 /DEF=Kynurenine 3-mono oxygenase, required for biosynthesis of nicotinic acid from tryptophan via kynurenine pathway /NOTE=Bna4p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: kynurenine 3-monooxygenase activity [goid GO:0004502] [evidence TAS] [pmid 12062417]; go_process: NAD biosynthesis [goid GO:0009435] [evidence IMP] [pmid 12062417] --- --- --- --- --- --- S0000194 // BNA4 SGDID:S0000194, Chr II from 39142-40524, Verified ORF // sgd // 11 // --- /// GENSCAN00000021062 // cdna:Genscan chromosome:SGD1:II:39142:40524:1 // ensembl // 11 // --- /// GENEFINDER00000022207 // cdna:GeneFinder chromosome:SGD1:II:39142:40524:1 // ensembl // 11 // --- /// YBL098W // cdna:known chromosome:SGD1:II:39142:40524:1 gene:YBL098W // ensembl // 11 // --- --- No cerevisiae_gene -1.72675105534324 1.30566161489861 -1.1004699500496 1.37240007015222 1.00850345341799 Max fold change below threshold 4 1.72675105534324 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776368_at YCR027C.S1 Putative Rheb-related GTPase involved in regulating canavanine resistance and arginine uptake; member of the Ras superfamily of G-proteins 1.72673960962089 244.626518249512 198.194244384766 RHB1 15809 // L-arginine transport // inferred from mutant phenotype /// 15809 // L-arginine transport // inferred from genetic interaction /// 15819 // L-lysine transport // inferred from mutant phenotype 19897 // extrinsic to plasma membrane // inferred from genetic interaction 3924 // GTPase activity // inferred from sequence similarity 183.478775024414 172.432968139648 316.820068359375 212.909713745117 0.00195312988944352 0.00292969006113708 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR027C /GEN=RHB1 /DB_XREF=GI:10383790 /SEG=NC_001135:-167365,167994 /DEF=rheb homologue /NOTE=Rhb1p; go_component: extrinsic to plasma membrane [goid GO:0019897] [evidence IGI] [pmid 10753927]; go_function: GTPase activity [goid GO:0003924] [evidence ISS] [pmid 10753927]; go_process: L-arginine transport [goid GO:0015809] [evidence IGI,IMP] [pmid 10753927]; go_process: L-lysine transport [goid GO:0015819] [evidence IMP] [pmid 10753927] --- --- --- --- --- --- S0000622 // RHB1 SGDID:S0000622, Chr III from 167994-167365, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022478 // cdna:Genscan chromosome:SGD1:III:167365:167979:-1 // ensembl // 11 // --- /// YCR027C // cdna:known chromosome:SGD1:III:167365:167994:-1 gene:YCR027C // ensembl // 11 // --- --- No cerevisiae_gene 1.62027599564721 -1.06405855564592 1.34564240488038 1.72673960962089 1.16040514068609 Max fold change below threshold 4 1.72673960962089 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777171_at YAL044W-A.S1 Similar to pombe uvi31, putative DNA repair protein 1.72668349671882 749.914245605469 897.072235107422 --- --- --- --- 868.402709960938 631.160034179688 868.66845703125 925.741760253906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL044W-A /GEN=SPC72 /DB_XREF=GI:12621476 /SEG=NC_001133:+57521,57853 /DEF=Similar to pombe uvi31, putative DNA repair protein /NOTE=Yal044w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007586 // YAL044W-A SGDID:S0007586, Chr I from 57519-57851, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018190 // cdna:GeneFinder chromosome:SGD1:I:57534:57851:1 // ensembl // 10 // --- /// YAL044W-A // cdna:known chromosome:SGD1:I:57519:57851:1 gene:YAL044W-A // ensembl // 11 // --- YAL045C // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene -1.72668349671882 -1.3758835524014 1.02627026738291 1.00030601824161 1.06602817982402 Max fold change below threshold 4 1.72668349671882 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777904_at SPBC15D4.03.S1 --- 1.72634513200691 --- --- --- --- 13.5110158920288 11.8897047042847 23.3246765136719 9.37758636474609 0.149657994508743 0.0561522990465164 0.0239257998764515 0.149657994508743 A M P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC15D4.03 /GEN=slm9 /DEF=WD repeat protein --- --- --- --- --- --- SPBC15D4.03 // |slm9||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.27557616590481 -1.136362611862 1.45034599681365 1.72634513200691 -1.44077754834888 Max fold change below threshold 4 1.72634513200691 Max fold change below threshold APMPPA No 4 0 AMPA 2 1 1 No No x = 1
1778804_at YER011W.S1 Cell wall mannoprotein of the Srp1p/Tip1p family of serine-alanine-rich proteins; expression is downregulated at acidic pH and induced by cold shock and anaerobiosis; abundance is increased in cells cultured without shaking 1.72613863098102 227.625549316406 198.394088745117 TIR1 6950 // response to stress // inferred from sequence similarity 9277 // cell wall (sensu Fungi) // inferred from direct assay 5199 // structural constituent of cell wall // inferred from direct assay 161.140609741211 228.699310302734 226.551788330078 235.647567749023 0.00585938012227416 0.00415039015933871 0.00415039015933871 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER011W /GEN=TIR1 /DB_XREF=GI:6320848 /SEG=NC_001137:+175247,176011 /DEF=Cold-shock induced protein of the Srp1p/Tip1p family of serine-alanine-rich proteins. Encodes a stress-response cell wall mannoprotein and this gene is downregulated at acidic pH. /NOTE=Tir1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 8733242]; go_function: structural constituent of cell wall [goid GO:0005199] [evidence IDA] [pmid 9363789]; go_process: response to stress [goid GO:0006950] [evidence ISS] [pmid 8733242] --- --- --- --- --- --- S0000813 // TIR1 SGDID:S0000813, Chr V from 175247-176011, Verified ORF // sgd // 11 // --- /// GENSCAN00000016813 // cdna:Genscan chromosome:SGD1:V:175247:176011:1 // ensembl // 11 // --- /// GENEFINDER00000019713 // cdna:GeneFinder chromosome:SGD1:V:175247:176011:1 // ensembl // 11 // --- /// YER011W // cdna:known chromosome:SGD1:V:175247:176011:1 gene:YER011W // ensembl // 11 // --- --- No cerevisiae_gene 1.72613863098102 1.41925310243037 1.48149497690027 1.40592609581108 1.46237232270295 Max fold change below threshold 4 1.72613863098102 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1774858_at YFR023W.S1 Poly(A) binding protein, suppressor of DNA polymerase epsilon mutation, similar to Mip6p 1.72608600815119 30.4149913787842 31.5458612442017 PES4 --- --- --- 25.032377243042 34.3707313537598 26.4592514038086 38.0593452453613 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR023W /GEN=PES4 /DB_XREF=GI:14318545 /SEG=NC_001138:+199862,201697 /DEF=Suppressor of DNA polymerase epsilon mutation; similar to YHR015W /NOTE=Pes4p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001919 // PES4 SGDID:S0001919, Chr VI from 199862-201697, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018547 // cdna:GeneFinder chromosome:SGD1:VI:199901:201697:1 // ensembl // 11 // --- /// GENSCAN00000023264 // cdna:Genscan chromosome:SGD1:VI:199901:201697:1 // ensembl // 11 // --- /// YFR023W // cdna:known chromosome:SGD1:VI:199862:201697:1 gene:YFR023W // ensembl // 11 // --- --- No cerevisiae_gene -1.72608600815119 1.37305102987426 1.60862682797204 1.05700114483387 1.52040474925091 Max fold change below threshold 4 1.72608600815119 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771816_at YPR118W.S1 Methylthioribose-1-phosphate isomerase, catalyzes the isomerization of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate in the methionine salvage pathway 1.72599768798513 167.391510009766 283.741317749023 --- 19509 // methionine salvage // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 50261 // ribose isomerase activity // inferred from sequence similarity 268.445129394531 155.530410766602 179.25260925293 299.037506103516 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR118W /GEN=PIS1 /DB_XREF=GI:6325375 /SEG=NC_001148:+767748,768983 /DEF=Hypothetical ORF /NOTE=Ypr118wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006322 // YPR118W SGDID:S0006322, Chr XVI from 767750-768985, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017272 // cdna:Genscan chromosome:SGD1:XVI:767750:768985:1 // ensembl // 11 // --- /// GENEFINDER00000020751 // cdna:GeneFinder chromosome:SGD1:XVI:767750:768985:1 // ensembl // 11 // --- /// YPR118W // cdna:known chromosome:SGD1:XVI:767750:768985:1 gene:YPR118W // ensembl // 11 // --- --- No cerevisiae_gene 1.53902046403021 -1.72599768798513 1.17071919112456 -1.49758003810002 1.11396137742556 Max fold change below threshold 4 1.72599768798513 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770088_at YIL166C.S1 Hypothetical protein, member of the Dal5p subfamily of the major facilitator family 1.72593189514801 234.946571350098 321.767120361328 --- 6810 // transport // inferred from sequence similarity 16020 // membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity 323.2607421875 239.45280456543 230.440338134766 320.273498535156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL166C /GEN=VTH1 /DB_XREF=GI:6322025 /SEG=NC_001141:-30938,32566 /DEF=Hypothetical ORF, member of the Dal5p subfamily of the major facilitator family /NOTE=Yil166cp; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 10869563]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 10869563]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 10869563] --- --- --- --- --- S0001428 // span:81-103,118-140,147-166,172-194,207-229,239-261,326-348,358-380,387-409,414-436,449-468,483-503 // numtm:12 S0001428 // YIL166C SGDID:S0001428, Chr IX from 32566-30938, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016349 // cdna:Genscan chromosome:SGD1:IX:30938:31876:-1 // ensembl // 11 // --- /// GENEFINDER00000019151 // cdna:GeneFinder chromosome:SGD1:IX:30938:32026:-1 // ensembl // 11 // --- /// YIL166C // cdna:known chromosome:SGD1:IX:30938:32566:-1 gene:YIL166C // ensembl // 11 // --- --- No cerevisiae_gene -1.0917076617566 -1.3499977282545 1.72593189514801 -1.4027958160626 -1.00932716464524 Max fold change below threshold 4 1.72593189514801 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779051_at YJR076C.S1 Component of the septin ring of the mother-bud neck that is required for cytokinesis; septins recruit proteins to the neck and can act as a barrier to diffusion at the membrane, and they comprise the 10nm filaments seen with EM 1.72582423655467 688.551513671875 872.449127197266 CDC11 747 // conjugation with cellular fusion // traceable author statement /// 902 // cellular morphogenesis // traceable author statement /// 910 // cytokinesis // traceable author statement /// 7047 // cell wall organization and biogenesis // traceable author statement /// 7120 // axial bud site selection // traceable author statement /// 30468 // establishment of cell polarity (sensu Fungi) // traceable author statement 144 // septin ring (sensu Saccharomyces) // traceable author statement /// 1400 // mating projection base // inferred from direct assay /// 5619 // spore wall (sensu Fungi) // traceable author statement /// 5628 // prospore membrane // traceable author statement 5200 // structural constituent of cytoskeleton // traceable author statement /// 5545 // phosphatidylinositol binding // inferred from direct assay 841.509643554688 487.598693847656 889.504333496094 903.388610839844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR076C /GEN=CDC11 /DB_XREF=GI:6322536 /SEG=NC_001142:-575268,576515 /DEF=Component of the septin ring of the mother-bud neck that is required for cytokinesis; septins recruit proteins to the neck and can act as a barrier to diffusion at the membrane, and they comprise the 10nm filaments seen with EM /NOTE=Cdc11p; go_component: prospore membrane [goid GO:0005628] [evidence TAS] [pmid 8791410]; go_component: septin ring (sensu Saccharomyces) [goid GO:0000144] [evidence TAS] [pmid 8791410]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 9813093]; go_component: spore wall (sensu Fungi) [goid GO:0005619] [evidence TAS] [pmid 8791410]; go_function: phosphatidylinositol binding [goid GO:0005545] [evidence IDA] [pmid 12665577]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence TAS] [pmid 8791410]; go_process: axial budding [goid GO:0007120] [evidence TAS] [pmid 9891811]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence TAS] [pmid 8791410]; go_process: cellular morphogenesis [goid GO:0000902] [evidence TAS] [pmid 8791410]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence TAS] [pmid 8791410]; go_process: cytokinesis [goid GO:0000910] [evidence TAS] [pmid 8791410]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence TAS] [pmid 8791410] --- --- --- --- --- --- S0003837 // CDC11 SGDID:S0003837, Chr X from 576515-575268, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024194 // cdna:Genscan chromosome:SGD1:X:575268:576515:-1 // ensembl // 11 // --- /// GENEFINDER00000024401 // cdna:GeneFinder chromosome:SGD1:X:575268:576515:-1 // ensembl // 11 // --- /// YJR076C // cdna:known chromosome:SGD1:X:575268:576515:-1 gene:YJR076C // ensembl // 11 // --- --- No cerevisiae_gene 1.20517731760852 -1.72582423655467 -1.06078318860303 1.05703403437977 1.07353328361606 Max fold change below threshold 4 1.72582423655467 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769640_at YPL101W.S1 Elongator protein, part of the HAP subcomplex of Elongator, which is a six-subunit component of the RNA polymerase II holoenzyme; required for Elongator structural integrity and histone acetyltransferase activity 1.72579008217199 562.918228149414 804.342834472656 ELP4 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 8023 // transcription elongation factor complex // inferred from direct assay 16944 // RNA polymerase II transcription elongation factor activity // inferred from mutant phenotype /// 16944 // RNA polymerase II transcription elongation factor activity // inferred from physical interaction 797.3427734375 462.016082763672 663.820373535156 811.342895507813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL101W /GEN=ELP4 /DB_XREF=GI:6325155 /SEG=NC_001148:+360204,361574 /DEF=Elongator protein, part of the HAP subcomplex of Elongator, which is a six-subunit component of the RNA polymerase II holoenzyme; required for Elongator structural integrity and histone acetyltransferase activity /NOTE=Elp4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: transcription elongation factor complex [goid GO:0008023] [evidence IDA] [pmid 11689709]; go_function: Pol II transcription elongation factor activity [goid GO:0016944] [evidence IMP,IPI] [pmid 11689709]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP] [pmid 11689709] --- --- --- --- --- --- S0006022 // ELP4 SGDID:S0006022, Chr XVI from 360206-361576, Verified ORF // sgd // 11 // --- /// GENSCAN00000017113 // cdna:Genscan chromosome:SGD1:XVI:360206:361576:1 // ensembl // 11 // --- /// GENEFINDER00000020936 // cdna:GeneFinder chromosome:SGD1:XVI:360401:361576:1 // ensembl // 11 // --- /// YPL101W // cdna:known chromosome:SGD1:XVI:360206:361576:1 gene:YPL101W // ensembl // 11 // --- --- No cerevisiae_gene -1.11004146872868 -1.72579008217199 1.28404167467871 -1.20114236505167 1.01755847364109 Max fold change below threshold 4 1.72579008217199 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770917_at YHL030W.S1 Major component of the proteasome; tethers the proteasome core particle to the regulatory particle, and enhances the stability of the proteasome 1.72558042794112 310.722427368164 559.793060302734 ECM29 30163 // protein catabolism // inferred from curator 502 // proteasome complex (sensu Eukaryota) // inferred from direct assay /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 5515 // protein binding // inferred from direct assay /// 5515 // protein binding // inferred from mutant phenotype 522.826171875 318.459167480469 302.985687255859 596.759948730469 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL030W /GEN=ECM29 /DB_XREF=GI:6321757 /SEG=NC_001140:+40082,45688 /DEF=Major component of the proteasome; tethers the proteasome core particle to the regulatory particle, and enhances the stability of the proteasome /NOTE=Ecm29p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_component: proteasome complex (sensu Eukarya) [goid GO:0000502] [evidence IDA] [pmid 12408819]; go_function: protein binding [goid GO:0005515] [evidence IDA,IMP] [pmid 35488]; go_process: protein catabolism [goid GO:0030163] [evidence IC] [pmid 35488] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 2.5 --- S0001022 // ECM29 SGDID:S0001022, Chr VIII from 40082-45688, Verified ORF // sgd // 10 // --- /// GENSCAN00000016526 // cdna:Genscan chromosome:SGD1:VIII:40082:45688:1 // ensembl // 10 // --- /// GENEFINDER00000020198 // cdna:GeneFinder chromosome:SGD1:VIII:42416:45688:1 // ensembl // 10 // --- /// YHL030W // cdna:known chromosome:SGD1:VIII:40082:45688:1 gene:YHL030W // ensembl // 10 // --- --- No cerevisiae_gene -1.57607322811255 -1.64173691720483 -1.17672899362764 -1.72558042794112 1.14141177475933 Max fold change below threshold 4 1.72558042794112 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778027_at SPAC23G3.03.S1 --- 1.72553023382308 --- --- --- --- 13.2119770050049 9.43514251708984 12.4311637878418 8.68001270294189 0.366210997104645 0.0805663987994194 0.274170011281967 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23G3.03 /DEF=peptide monooxygenase (predicted) --- --- --- --- --- --- SPAC23G3.03 // |sib2||ornithine N5 monooxygenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.3971730912789 -1.40029437616592 -1.72553023382308 -1.0628109508079 -1.52211493890176 Max fold change below threshold 4 1.72553023382308 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769968_at YPR184W.S1 Glycogen debranching enzyme containing glucanotranferase and alpha-1,6-amyloglucosidase activities, required for glycogen degradation 1.72552199876736 7236.59350585938 5941.0625 GDB1 5980 // glycogen catabolism // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4134 // 4-alpha-glucanotransferase activity // inferred from direct assay /// 4134 // 4-alpha-glucanotransferase activity // inferred from sequence similarity /// 4134 // 4-alpha-glucanotransferase activity // inferred from mutant phenotype /// 4135 // amylo-alpha-1,6-glucosidase activity // inferred from direct assay /// 4135 // amylo-alpha-1,6-glucosidase activity // inferred from mutant phenotype /// 4135 // amylo-alpha-1,6-glucosidase activity // inferred from sequence similarity 6767.59375 9013.5546875 5459.63232421875 5114.53125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR184W /GEN=GDB1 /DB_XREF=GI:6325442 /SEG=NC_001148:+902038,906648 /DEF=Glycogen debranching enzyme containing glucanotranferase and alpha-1,6-amyloglucosidase activities, required for glycogen degradation /NOTE=Gdb1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: 4-alpha-glucanotransferase activity [goid GO:0004134] [evidence IDA,IMP,ISS] [pmid 11094287]; go_function: amylo-alpha-1,6-glucosidase activity [goid GO:0004135] [evidence IDA,IMP,ISS] [pmid 11094287]; go_process: glycogen catabolism [goid GO:0005980] [evidence IMP] [pmid 11094287] --- --- --- --- --- --- S0006388 // GDB1 SGDID:S0006388, Chr XVI from 902040-906650, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020763 // cdna:GeneFinder chromosome:SGD1:XVI:901857:906650:1 // ensembl // 11 // --- /// GENSCAN00000017327 // cdna:Genscan chromosome:SGD1:XVI:902040:906650:1 // ensembl // 11 // --- /// YPR184W // cdna:known chromosome:SGD1:XVI:902040:906650:1 gene:YPR184W // ensembl // 11 // --- --- No cerevisiae_gene -1.72552199876736 1.33186994084862 -1.22373907047255 -1.23956950726868 -1.32320899398161 Max fold change below threshold 4 1.72552199876736 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773399_at YOR221C.S1 Predicted malonyl-CoA:ACP transferase, putative component of a type-II mitochondrial fatty acid synthase that produces intermediates for phospholipid remodeling 1.72517456801758 539.749694824219 952.749481201172 MCT1 6631 // fatty acid metabolism // inferred from sequence similarity /// 6631 // fatty acid metabolism // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from mutant phenotype 5739 // mitochondrion // inferred from sequence similarity /// 5739 // mitochondrion // inferred from mutant phenotype 4314 // [acyl-carrier protein] S-malonyltransferase activity // inferred from sequence similarity /// 4314 // [acyl-carrier protein] S-malonyltransferase activity // inferred from mutant phenotype 893.659484863281 561.488342285156 518.011047363281 1011.83947753906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR221C /GEN=MCT1 /DB_XREF=GI:6324795 /SEG=NC_001147:-756476,757831 /DEF=malonyl-CoA:ACP transferase /NOTE=Mct1p; go_component: mitochondrion [goid GO:0005739] [evidence IMP,ISS] [pmid 9388293]; go_function: [acyl-carrier protein] S-malonyltransferase activity [goid GO:0004314] [evidence IMP,ISS] [pmid 9388293]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 9388293]; go_process: fatty acid metabolism [goid GO:0006631] [evidence IMP,ISS] [pmid 9388293] --- --- --- --- --- --- S0005747 // MCT1 SGDID:S0005747, Chr XV from 757831-757738,757536-756476, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000017635 // cdna:Genscan chromosome:SGD1:XV:756476:757306:-1 // ensembl // 11 // --- /// YOR221C // cdna:known chromosome:SGD1:XV:756476:757831:-1 gene:YOR221C // ensembl // 11 // --- --- No cerevisiae_gene -1.37104099812066 -1.59159045266416 1.16726337491703 -1.72517456801758 1.13224275540908 Max fold change below threshold 4 1.72517456801758 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776145_at YCR100C.S1 Hypothetical protein /// Hypothetical protein 1.72438773318073 97.7103996276855 124.097351074219 --- --- --- --- 120.711524963379 87.2649078369141 108.155891418457 127.483177185059 0.00292969006113708 0.00195312988944352 0.00122069998178631 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR100C /GEN=GIT1 /DB_XREF=GI:6319943 /SEG=NC_001135:-301267,302217 /DEF=Hypothetical ORF /NOTE=Ycr100cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000697 // YCR100C SGDID:S0000697, Chr III from 302217-301267, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022529 // cdna:Genscan chromosome:SGD1:III:301267:302217:-1 // ensembl // 11 // --- /// YCR100C // cdna:known chromosome:SGD1:III:301267:302217:-1 gene:YCR100C // ensembl // 11 // --- --- No cerevisiae_gene -1.45856988457479 -1.38327682863049 1.72438773318073 -1.11608829977041 1.05609781024417 Max fold change below threshold 4 1.72438773318073 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779559_at YJR094W-A.S1 Protein component of the large (60S) ribosomal subunit, identical to Rpl43Ap and has similarity to rat L37a ribosomal protein 1.72427948353479 2373.74670410156 3311.13012695313 RPL43B 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3463.70092773438 2585.70361328125 2161.78979492188 3158.55932617188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR094W-A /GEN=RPL43B /DB_XREF=GI:6322554 /SEG=NC_001142:+608222,608775 /DEF=Protein component of the large (60S) ribosomal subunit, identical to Rpl43Ap and has similarity to rat L37a ribosomal protein /NOTE=Rpl43bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0003855 // RPL43B SGDID:S0003855, Chr X from 608222-608223,608499-608775, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024411 // cdna:GeneFinder chromosome:SGD1:X:608370:608775:1 // ensembl // 11 // --- /// YJR094W-A // cdna:known chromosome:SGD1:X:608222:608775:1 gene:YJR094W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.34575306299943 -1.33955837395414 -1.72427948353479 -1.60223761619688 -1.09660784239007 Max fold change below threshold 4 1.72427948353479 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773671_at YLR407W.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery 1.72384891650431 771.1318359375 1000.9670715332 --- --- --- --- 973.600524902344 799.026550292969 743.237121582031 1028.33361816406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR407W /GEN=RPL31B /DB_XREF=GI:6323439 /SEG=NC_001144:+932965,933654 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery /NOTE=Ylr407wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004399 // YLR407W SGDID:S0004399, Chr XII from 932965-933654, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018125 // cdna:Genscan chromosome:SGD1:XII:932965:933654:1 // ensembl // 11 // --- /// GENEFINDER00000024620 // cdna:GeneFinder chromosome:SGD1:XII:932965:933654:1 // ensembl // 11 // --- /// YLR407W // cdna:known chromosome:SGD1:XII:932965:933654:1 gene:YLR407W // ensembl // 11 // --- --- No cerevisiae_gene 1.72384891650431 -1.21848332141825 1.12731709821621 -1.3099460409485 1.05621719777442 Max fold change below threshold 4 1.72384891650431 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772460_at YJR111C.S1 Hypothetical protein 1.72366196446299 391.0458984375 450.210357666016 --- --- 5739 // mitochondrion // inferred from direct assay --- 477.194549560547 465.148559570313 316.943237304688 423.226165771484 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR111C /GEN=YMR1 /DB_XREF=GI:6322571 /SEG=NC_001142:-635770,636621 /DEF=Hypothetical ORF /NOTE=Yjr111cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003872 // YJR111C SGDID:S0003872, Chr X from 636621-635770, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024220 // cdna:Genscan chromosome:SGD1:X:635770:636450:-1 // ensembl // 11 // --- /// GENEFINDER00000024294 // cdna:GeneFinder chromosome:SGD1:X:635770:636621:-1 // ensembl // 11 // --- /// YJR111C // cdna:known chromosome:SGD1:X:635770:636621:-1 gene:YJR111C // ensembl // 11 // --- --- No cerevisiae_gene 1.72366196446299 -1.02589708114191 -1.42356665891916 -1.50561518087166 -1.12751665221522 Max fold change below threshold 4 1.72366196446299 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775529_at YER060W-A.S1 Putative purine-cytosine permease, very similar to Fcy2p but cannot substitute for its function 1.72361934817935 23.6773881912231 18.2210636138916 FCY22 --- 16021 // integral to membrane // inferred from sequence similarity 15392 // cytosine-purine permease activity // inferred from sequence similarity 20.963550567627 21.8065814971924 25.5481948852539 15.4785766601563 0.0805663987994194 0.129638999700546 0.00805663969367743 0.018554700538516 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER060W-A /GEN=FCY22 /DB_XREF=GI:6320903 /SEG=NC_001137:+276570,278162 /DEF=Putative purine-cytosine permease, very similar to Fcy2p but cannot substitute for its function /NOTE=Fcy22p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 11418581]; go_function: cytosine-purine permease activity [goid GO:0015392] [evidence ISS] [pmid 11418581]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002958 // span:87-109,119-141,162-184,199-221,228-246,256-278,299-321,341-363,368-387,397-419,426-445,460-482 // numtm:12 S0002958 // FCY22 SGDID:S0002958, Chr V from 276570-278162, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019771 // cdna:GeneFinder chromosome:SGD1:V:276588:278162:1 // ensembl // 11 // --- /// GENSCAN00000016854 // cdna:Genscan chromosome:SGD1:V:277509:278162:1 // ensembl // 11 // --- /// YER060W-A // cdna:known chromosome:SGD1:V:276570:278162:1 gene:YER060W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.72361934817935 1.04021412913074 1.0371191248645 1.21869598390965 -1.35435906206994 Max fold change below threshold 4 1.72361934817935 Max fold change below threshold APAAPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1769541_at YPR042C.S1 Member of the PUF protein family, which is defined by the presence of Pumilio homology domains that confer RNA binding activity; preferentially binds mRNAs encoding membrane-associated proteins 1.72355546488606 932.004730224609 629.645172119141 PUF2 288 // mRNA catabolism, deadenylylation-dependent decay // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay 3729 // mRNA binding // inferred from sequence similarity 583.406066894531 858.476745605469 1005.53271484375 675.88427734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR042C /GEN=PUF2 /DB_XREF=GI:6325299 /SEG=NC_001148:-650430,653657 /DEF=mRNA binding protein /NOTE=Puf2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: mRNA binding [goid GO:0003729] [evidence ISS] [pmid 11101532]; go_process: mRNA catabolism, deadenylation-dependent [goid GO:0000288] [evidence IGI] [pmid 11101532] --- --- --- --- --- --- S0006246 // PUF2 SGDID:S0006246, Chr XVI from 653659-650432, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020826 // cdna:GeneFinder chromosome:SGD1:XVI:650432:653659:-1 // ensembl // 11 // --- /// YPR042C // cdna:known chromosome:SGD1:XVI:650432:653659:-1 gene:YPR042C // ensembl // 11 // --- --- No cerevisiae_gene 1.52403796610879 1.47149094656341 1.02165250391666 1.72355546488606 1.15851431052385 Max fold change below threshold 4 1.72355546488606 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775450_at YLR301W.S1 Hypothetical protein 1.72301237167663 781.955413818359 565.637573242188 --- 6613 // cotranslational protein-membrane targeting // inferred from physical interaction 5789 // endoplasmic reticulum membrane // inferred from physical interaction --- 503.049987792969 697.149475097656 866.761352539063 628.225158691406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR301W /GEN=EXG1 /DB_XREF=GI:6323332 /SEG=NC_001144:+730827,731561 /DEF=Hypothetical ORF /NOTE=Ylr301wp; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IPI] [pmid 12518317]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cotranslational membrane targeting [goid GO:0006613] [evidence IPI] [pmid 12518317] --- --- --- --- --- --- S0004292 // YLR301W SGDID:S0004292, Chr XII from 730827-731561, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018053 // cdna:Genscan chromosome:SGD1:XII:730827:731561:1 // ensembl // 11 // --- /// GENEFINDER00000024774 // cdna:GeneFinder chromosome:SGD1:XII:730827:731561:1 // ensembl // 11 // --- /// YLR301W // cdna:known chromosome:SGD1:XII:730827:731561:1 gene:YLR301W // ensembl // 11 // --- --- No cerevisiae_gene 1.48335428503692 1.38584532753148 1.1913070308061 1.72301237167663 1.24883246980607 Max fold change below threshold 4 1.72301237167663 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776998_at YDL171C.S1 NAD(+)-dependent glutamate synthase (GOGAT), synthesizes glutamate from glutamine and alpha-ketoglutarate; with Gln1p, forms the secondary pathway for glutamate biosynthesis from ammonia; expression regulated by nitrogen source 1.72292342574819 2530.01879882813 1477.46032714844 GLT1 6537 // glutamate biosynthesis // inferred from expression pattern 5739 // mitochondrion // inferred from direct assay /// 31026 // glutamate synthase complex // inferred from physical interaction 16040 // glutamate synthase (NADH) activity // inferred from sequence similarity 1525.82287597656 2431.16162109375 2628.8759765625 1429.09777832031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL171C /GEN=GLT1 /DB_XREF=GI:6320030 /SEG=NC_001136:-149204,155641 /DEF=NAD(+)-dependent glutamate synthase (GOGAT), synthesizes glutamate from glutamine and alpha-ketoglutarate; with Gln1p, forms the secondary pathway for glutamate biosynthesis from ammonia; expression regulated by nitrogen source /NOTE=Glt1p; go_component: cell [goid GO:0005623] [evidence IDA] [pmid 7047525]; go_function: glutamate synthase (NADH) activity [goid GO:0016040] [evidence ISS] [pmid 8923741]; go_process: glutamate biosynthesis [goid GO:0006537] [evidence IEP] [pmid 9657994] --- --- --- --- --- --- S0002330 // GLT1 SGDID:S0002330, Chr IV from 155641-149204, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023480 // cdna:GeneFinder chromosome:SGD1:IV:149204:155641:-1 // ensembl // 11 // --- /// GENSCAN00000024973 // cdna:Genscan chromosome:SGD1:IV:149204:155641:-1 // ensembl // 11 // --- /// YDL171C // cdna:known chromosome:SGD1:IV:149204:155641:-1 gene:YDL171C // ensembl // 11 // --- --- No cerevisiae_gene 1.1051736219754 1.59334458761326 -1.05283470149313 1.72292342574819 -1.06768263104428 Max fold change below threshold 4 1.72292342574819 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774081_at YOL126C.S1 Cytoplasmic malate dehydrogenase, one of the three isozymes that catalyze interconversion of malate and oxaloacetate; involved in gluconeogenesis during growth on ethanol or acetate as carbon source; interacts with Pck1p and Fbp1p 1.72280412004007 6426.99291992188 4048.86083984375 MDH2 6094 // gluconeogenesis // traceable author statement /// 6094 // gluconeogenesis // inferred from expression pattern /// 6108 // malate metabolism // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5829 // cytosol // traceable author statement 30060 // L-malate dehydrogenase activity // inferred from mutant phenotype /// 30060 // L-malate dehydrogenase activity // traceable author statement 4398.61279296875 7577.9482421875 5276.03759765625 3699.10888671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL126C /GEN=MDH2 /DB_XREF=GI:6324446 /SEG=NC_001147:-81786,83057 /DEF=cytosolic malate dehydrogenase /NOTE=Mdh2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 9175438]; go_component: peroxisomal matrix [goid GO:0005782] [evidence TAS]; go_function: malic enzyme activity [goid GO:0004470] [evidence TAS] [pmid 9175438]; go_process: gluconeogenesis [goid GO:0006094] [evidence TAS] [pmid 9175438]; go_process: glyoxylate cycle [goid GO:0006097] [evidence TAS] [pmid 9175438]; go_process: malate metabolism [goid GO:0006108] [evidence TAS] [pmid 9175438] --- --- --- --- --- --- S0005486 // MDH2 SGDID:S0005486, Chr XV from 83057-81786, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017366 // cdna:Genscan chromosome:SGD1:XV:81786:82919:-1 // ensembl // 11 // --- /// YOL126C // cdna:known chromosome:SGD1:XV:81786:83057:-1 gene:YOL126C // ensembl // 11 // --- --- No cerevisiae_gene -1.52082333229535 1.72280412004007 -1.67353756378273 1.19947761850965 -1.1891006530685 Max fold change below threshold 4 1.72280412004007 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775014_at YML128C.S1 Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum; msc1 mutants are defective in directing meiotic recombination events to homologous chromatids 1.72280039319916 6858.71313476563 6728.84594726563 MSC1 7131 // meiotic recombination // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay --- 7974.83544921875 8362.517578125 5354.90869140625 5482.8564453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML128C /GEN=MSC1 /DB_XREF=GI:6323507 /SEG=NC_001145:-15136,16677 /DEF=Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum; msc1 mutants are defective in directing meiotic recombination events to homologous chromatids /NOTE=Msc1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiotic recombination [goid GO:0007131] [evidence IMP] [pmid 10511544] --- --- --- --- scop // a.2.9.C-terminal UvrC-binding domain of UvrB // All alpha proteins; Long alpha-hairpin; C-terminal UvrC-binding domain of UvrB; C-terminal UvrC-binding domain of UvrB // 2.20000004768372 --- S0004597 // MSC1 SGDID:S0004597, Chr XIII from 16677-15136, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018608 // cdna:Genscan chromosome:SGD1:XIII:15136:16677:-1 // ensembl // 11 // --- /// GENEFINDER00000021801 // cdna:GeneFinder chromosome:SGD1:XIII:15136:16677:-1 // ensembl // 11 // --- /// YML128C // cdna:known chromosome:SGD1:XIII:15136:16677:-1 gene:YML128C // ensembl // 11 // --- --- No cerevisiae_gene -1.72280039319916 1.04861318222487 -1.33524444246418 -1.48925703663576 -1.45450378443461 Max fold change below threshold 4 1.72280039319916 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775173_at SPAC7D4.15c.S1 --- 1.72266477064827 --- --- --- --- 3.51444101333618 4.52796363830566 5.20150852203369 3.06086540222168 0.567627012729645 0.274170011281967 0.567627012729645 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC7D4.15c /DEF=oligosaccharyltransferase subunit (predicted) --- --- --- --- --- --- SPAC7D4.15c // |||oligosaccharyltransferase subunit |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.72266477064827 1.28838800284981 -1.34490467280442 1.48003864691302 -1.14818541540091 Max fold change below threshold 4 1.72266477064827 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776958_at YNL058C.S1 Protein of unknown function, localizes to the vacuole; potential Cdc28p substrate 1.72264625097773 165.45112991333 118.096195220947 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 120.812545776367 122.784980773926 208.117279052734 115.379844665527 0.00195312988944352 0.00195312988944352 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL058C /GEN=ARP5 /DB_XREF=GI:6324271 /SEG=NC_001146:-515761,516711 /DEF=Protein of unknown function, localizes to the vacuole; potential Cdc28p substrate /NOTE=Ynl058cp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005003 // span:93-115 // numtm:1 S0005003 // YNL058C SGDID:S0005003, Chr XIV from 516712-515762, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020453 // cdna:GeneFinder chromosome:SGD1:XIV:515762:516343:-1 // ensembl // 10 // --- /// YNL058C // cdna:known chromosome:SGD1:XIV:515762:516712:-1 gene:YNL058C // ensembl // 11 // --- --- No cerevisiae_gene 1.49013011692601 1.01632640869277 -1.3111203035446 1.72264625097773 -1.04708535642935 Max fold change below threshold 4 1.72264625097773 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778896_at YGR020C.S1 Subunit F of the eight-subunit V1 peripheral membrane domain of vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; required for the V1 domain to assemble onto the vacuolar membrane 1.72246816665503 2053.57904052734 3405.42736816406 VMA7 7035 // vacuolar acidification // traceable author statement 221 // hydrogen-transporting ATPase V1 domain // traceable author statement /// 329 // vacuolar membrane (sensu Fungi) // traceable author statement 46961 // hydrogen-transporting ATPase activity, rotational mechanism // traceable author statement 3491.43603515625 2080.162109375 2026.99597167969 3319.41870117188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR020C /GEN=VMA7 /DB_XREF=GI:6321457 /SEG=NC_001139:-526975,527331 /DEF=vacuolar H-ATPase 14 kDa subunit (subunit F) of the catalytic (V1) sector /NOTE=Vma7p; go_component: hydrogen-transporting ATPase V1 domain [goid GO:0000221] [evidence TAS] [pmid 9442887]; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence TAS] [pmid 11780757]; go_function: hydrogen-transporting ATPase activity, rotational mechanism [goid GO:0046961] [evidence TAS] [pmid 9442887]; go_process: vacuolar acidification [goid GO:0007035] [evidence TAS] [pmid 9442887] --- --- --- --- --- --- S0003252 // VMA7 SGDID:S0003252, Chr VII from 527333-526977, reverse complement, Verified ORF // sgd // 11 // --- /// YGR020C // cdna:known chromosome:SGD1:VII:526977:527333:-1 gene:YGR020C // ensembl // 11 // --- --- No cerevisiae_gene -1.12929659781455 -1.67844420366126 -1.43422031633651 -1.72246816665503 -1.05182152342627 Max fold change below threshold 4 1.72246816665503 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770727_at YLR260W.S1 Minor sphingoid long-chain base kinase, paralog of Lcb4p responsible for few percent of the total activity, possibly involved in synthesis of long-chain base phosphates, which function as signaling molecules 1.72223828477102 1163.92889404297 718.1298828125 LCB5 6665 // sphingolipid metabolism // inferred from direct assay /// 9408 // response to heat // inferred from direct assay /// 19722 // calcium-mediated signaling // inferred from mutant phenotype 5624 // membrane fraction // inferred from direct assay /// 5625 // soluble fraction // inferred from direct assay 17050 // D-erythro-sphingosine kinase activity // inferred from direct assay 696.426696777344 1199.41271972656 1128.44506835938 739.833068847656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR260W /GEN=LCB5 /DB_XREF=GI:6323289 /SEG=NC_001144:+665846,667909 /DEF=involved in sphingolipid biosynthesis /NOTE=Lcb5p; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 9677363]; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 9677363]; go_function: D-erythro-sphingosine kinase activity [goid GO:0017050] [evidence IDA] [pmid 9677363]; go_process: calcium-mediated signaling [goid GO:0019722] [evidence IMP] [pmid 11278643]; go_process: response to heat [goid GO:0009408] [evidence IDA] [pmid 11967828]; go_process: sphingolipid metabolism [goid GO:0006665] [evidence IDA] [pmid 9677363] --- --- --- --- --- --- S0004250 // LCB5 SGDID:S0004250, Chr XII from 665846-667909, Verified ORF // sgd // 11 // --- /// GENSCAN00000018023 // cdna:Genscan chromosome:SGD1:XII:665846:667909:1 // ensembl // 11 // --- /// GENEFINDER00000024838 // cdna:GeneFinder chromosome:SGD1:XII:665846:667909:1 // ensembl // 11 // --- /// YLR260W // cdna:known chromosome:SGD1:XII:665846:667909:1 gene:YLR260W // ensembl // 11 // --- --- No cerevisiae_gene -1.09276621215567 1.72223828477102 -1.15219045595631 1.62033574183925 1.06232726613034 Max fold change below threshold 4 1.72223828477102 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780041_at YPL037C.S1 Subunit beta1 of the nascent polypeptide-associated complex (NAC) involved in protein targeting, associated with cytoplasmic ribosomes; enhances DNA binding of the Gal4p activator; homolog of human BTF3b 1.72209021355296 3800.12902832031 5835.0390625 EGD1 6444 // nascent polypeptide association // inferred from physical interaction 5830 // cytosolic ribosome (sensu Eukaryota) // traceable author statement /// 5854 // nascent polypeptide-associated complex // inferred from direct assay 51082 // unfolded protein binding // inferred from mutant phenotype 6423.37841796875 3870.2685546875 3729.98950195313 5246.69970703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL037C /GEN=EGD1 /DB_XREF=GI:6325220 /SEG=NC_001148:-481423,481896 /DEF=Subunit beta1 of the nascent polypeptide-associated complex (NAC) involved in protein targeting, associated with cytoplasmic ribosomes; enhances DNA binding of the Gal4p activator; homolog of human BTF3b /NOTE=Egd1p; go_component: cytosolic ribosome (sensu Eukarya) [goid GO:0005830] [evidence TAS] [pmid 9482879]; go_component: nascent polypeptide-associated complex [goid GO:0005854] [evidence IDA] [pmid 10219998]; go_function: chaperone activity [goid GO:0003754] [evidence IMP] [pmid 9482879]; go_process: nascent polypeptide association [goid GO:0006444] [evidence IPI] [pmid 10219998] --- --- --- --- --- --- S0005958 // EGD1 SGDID:S0005958, Chr XVI from 481898-481425, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017160 // cdna:Genscan chromosome:SGD1:XVI:481425:481898:-1 // ensembl // 11 // --- /// GENEFINDER00000020720 // cdna:GeneFinder chromosome:SGD1:XVI:481425:481898:-1 // ensembl // 11 // --- /// YPL037C // cdna:known chromosome:SGD1:XVI:481425:481898:-1 gene:YPL037C // ensembl // 11 // --- --- No cerevisiae_gene -1.20332448522399 -1.65967253362536 -1.31481985477 -1.72209021355296 -1.22427026066702 Max fold change below threshold 4 1.72209021355296 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778999_at YHR086W.S1 RNA binding protein, component of the U1 snRNP protein; mutants are defective in meiotic recombination and in formation of viable spores, involved in the formation of DSBs through meiosis-specific splicing of MER2 pre-mRNA 1.72204570107578 967.296051025391 733.821441650391 NAM8 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction /// 6376 // mRNA splice site selection // inferred from mutant phenotype 243 // commitment complex // inferred from physical interaction /// 243 // commitment complex // traceable author statement /// 5685 // snRNP U1 // inferred from physical interaction /// 5685 // snRNP U1 // traceable author statement /// 5685 // snRNP U1 // inferred from direct assay 3723 // RNA binding // inferred from physical interaction /// 3729 // mRNA binding // inferred from physical interaction 665.812438964844 788.032653808594 1146.55944824219 801.830444335938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR086W /GEN=NAM8 /DB_XREF=GI:6321878 /SEG=NC_001140:+278154,279725 /DEF=May be non-essent. part of mito. splicing. Assoc. with spliceosomal snRNPs. Disp. for mitosis & premeiotic DNA synth. Required in meiosis-specific splicing of MER2 & MER3, double strand breaks, synaptonemal complexes /NOTE=Nam8p; go_component: commitment complex [goid GO:0000243] [evidence IPI,TAS] [pmid 10072386]; go_component: snRNP U1 [goid GO:0005685] [evidence IPI,TAS] [pmid 10072386]; go_component: snRNP U1 [goid GO:0005685] [evidence IDA] [pmid 11804584]; go_function: RNA binding [goid GO:0003723] [evidence IPI] [pmid 10072385]; go_function: mRNA binding [goid GO:0003729] [evidence IPI] [pmid 10072386]; go_process: mRNA splice site selection [goid GO:0006376] [evidence IMP] [pmid 10072385]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10072386] --- --- --- --- --- --- S0001128 // NAM8 SGDID:S0001128, Chr VIII from 278154-279725, Verified ORF // sgd // 11 // --- /// GENSCAN00000016629 // cdna:Genscan chromosome:SGD1:VIII:278154:279725:1 // ensembl // 11 // --- /// GENEFINDER00000020283 // cdna:GeneFinder chromosome:SGD1:VIII:278760:279725:1 // ensembl // 11 // --- /// YHR086W // cdna:known chromosome:SGD1:VIII:278154:279725:1 gene:YHR086W // ensembl // 11 // --- --- No cerevisiae_gene 1.50788340761216 1.18356553240995 1.39567019667199 1.72204570107578 1.20428877174864 Max fold change below threshold 4 1.72204570107578 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770145_at YGR183C.S1 Subunit 9 of the ubiquinol cytochrome-c reductase complex, which is a component of the mitochondrial inner membrane electron transport chain; required for electron transfer at the ubiquinol oxidase site of the complex 1.72197069706906 4994.71655273438 2962.72912597656 QCR9 6122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from mutant phenotype /// 16226 // iron-sulfur cluster assembly // inferred from mutant phenotype 5750 // respiratory chain complex III (sensu Eukaryota) // inferred from direct assay 8121 // ubiquinol-cytochrome-c reductase activity // inferred from direct assay 3409.86181640625 5871.68212890625 4117.7509765625 2515.59643554688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR183C /GEN=QCR9 /DB_XREF=GI:6321622 /SEG=NC_001139:-859066,859479 /DEF=7.3 kDa subunit 9 of the ubiquinol cytochrome c oxidoreductase complex /NOTE=Qcr9p; go_component: respiratory chain complex III (sensu Eukarya) [goid GO:0005750] [evidence IDA] [pmid 10873857]; go_function: ubiquinol-cytochrome-c reductase activity [goid GO:0008121] [evidence IDA] [pmid 1332881]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 1332881]; go_process: iron-sulfur cluster assembly [goid GO:0016226] [evidence IMP] [pmid 8389362]; go_process: mitochondrial electron transport, ubiquinol to cytochrome c [goid GO:0006122] [evidence IMP] [pmid 1332881] --- --- --- --- --- S0003415 // span:15-37 // numtm:1 S0003415 // QCR9 SGDID:S0003415, Chr VII from 859481-859479,859265-859068, reverse complement, intron sequence removed, Verified ORF // sgd // 10 // --- /// YGR183C // cdna:known chromosome:SGD1:VII:859068:859481:-1 gene:YGR183C // ensembl // 10 // --- --- No cerevisiae_gene -1.28899448087743 1.72197069706906 -1.06483408104843 1.2076005416848 -1.35548841150467 Max fold change below threshold 4 1.72197069706906 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778808_at YDL078C.S1 Cytoplasmic malate dehydrogenase, catalyzes interconversion of malate and oxaloacetate; involved in the glyoxylate cycle 1.72183056874667 3566.54614257813 2137.89721679688 MDH3 6097 // glyoxylate cycle // traceable author statement /// 6108 // malate metabolism // traceable author statement /// 6635 // fatty acid beta-oxidation // traceable author statement /// 6735 // NADH regeneration // traceable author statement 5777 // peroxisome // inferred from direct assay /// 5782 // peroxisomal matrix // traceable author statement 30060 // L-malate dehydrogenase activity // traceable author statement /// 30060 // L-malate dehydrogenase activity // inferred from mutant phenotype 2200.802734375 3343.68286132813 3789.40942382813 2074.99169921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL078C /GEN=MDH3 /DB_XREF=GI:6320125 /SEG=NC_001136:-315357,316388 /DEF=malate dehydrogenase /NOTE=Mdh3p; go_component: peroxisomal matrix [goid GO:0005782] [evidence TAS]; go_function: malic enzyme activity [goid GO:0004470] [evidence TAS] [pmid 9175438]; go_process: NADH regeneration [goid GO:0006735] [evidence TAS] [pmid 9175438]; go_process: fatty acid beta-oxidation [goid GO:0006635] [evidence TAS] [pmid 9175438]; go_process: glyoxylate cycle [goid GO:0006097] [evidence TAS] [pmid 9175438]; go_process: malate metabolism [goid GO:0006108] [evidence TAS] [pmid 9175438] --- --- --- --- --- --- S0002236 // MDH3 SGDID:S0002236, Chr IV from 316388-315357, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023689 // cdna:GeneFinder chromosome:SGD1:IV:315357:316388:-1 // ensembl // 11 // --- /// GENSCAN00000025043 // cdna:Genscan chromosome:SGD1:IV:315357:316388:-1 // ensembl // 11 // --- /// YDL078C // cdna:known chromosome:SGD1:IV:315357:316388:-1 gene:YDL078C // ensembl // 11 // --- --- No cerevisiae_gene -1.38261658524001 1.5193014844548 1.13580405232111 1.72183056874667 -1.06063206672278 Max fold change below threshold 4 1.72183056874667 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775258_at YLR188W.S1 Half-type ATP-binding cassette (ABC) transporter of the inner mitochondrial membrane, mediates export of peptides generated upon proteolysis of mitochondrial proteins, plays a role in the regulation of cellular resistance to oxidative stress 1.72168141511522 403.46125793457 375.852981567383 MDL1 6857 // oligopeptide transport // inferred from sequence similarity /// 6857 // oligopeptide transport // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay 15440 // peptide-transporting ATPase activity // inferred from mutant phenotype /// 16887 // ATPase activity // inferred from direct assay /// 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from mutant phenotype /// 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from sequence similarity 348.374969482422 259.908050537109 547.014465332031 403.330993652344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR188W /GEN=MDL1 /DB_XREF=GI:6323217 /SEG=NC_001144:+528302,530389 /DEF=ATP-binding cassette (ABC) transporter family member /NOTE=Mdl1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 11251115]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence IMP,ISS] [pmid 11251115]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 12746444]; go_function: peptide-transporting ATPase activity [goid GO:0015440] [evidence IMP] [pmid 11251115]; go_process: oligopeptide transport [goid GO:0006857] [evidence IMP,ISS] [pmid 11251115] --- --- --- --- --- S0004178 // span:102-124,155-177,241-263,337-359,372-394 // numtm:5 S0004178 // MDL1 SGDID:S0004178, Chr XII from 528302-530389, Verified ORF // sgd // 10 // --- /// GENSCAN00000017966 // cdna:Genscan chromosome:SGD1:XII:528407:530389:1 // ensembl // 10 // --- /// GENEFINDER00000024754 // cdna:GeneFinder chromosome:SGD1:XII:528653:530389:1 // ensembl // 10 // --- /// YLR188W // cdna:known chromosome:SGD1:XII:528302:530389:1 gene:YLR188W // ensembl // 10 // --- --- No cerevisiae_gene 1.3484092007473 -1.34037775575821 1.72168141511522 1.57018877143994 1.15774963468693 Max fold change below threshold 4 1.72168141511522 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771580_at YKL161C.S1 Mpk1-like protein kinase; associates with Rlm1p 1.72166433358499 86.6457328796387 119.97155380249 --- --- --- 4672 // protein kinase activity // inferred from sequence similarity 108.62621307373 89.9527435302734 83.3387222290039 131.31689453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL161C /GEN=PIR3 /DB_XREF=GI:6322688 /SEG=NC_001143:-149391,150692 /DEF=Mpk1-like protein kinase; associates with Rlm1p /NOTE=Ykl161cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 9020587]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-68 /// hanks // 3.1.3 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk3 // 3.0E-73 --- --- S0001644 // YKL161C SGDID:S0001644, Chr XI from 150692-149391, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018299 // cdna:Genscan chromosome:SGD1:XI:149391:150692:-1 // ensembl // 10 // --- /// YKL161C // cdna:known chromosome:SGD1:XI:149391:150692:-1 gene:YKL161C // ensembl // 10 // --- --- No cerevisiae_gene 1.56597127867927 -1.20759199564794 -1.72166433358499 -1.30343026828801 1.20888771517901 Max fold change below threshold 4 1.72166433358499 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776865_at YKL071W.S1 Hypothetical protein 1.72162561714195 67.1876106262207 111.000305175781 --- --- 5737 // cytoplasm // inferred from direct assay --- 97.8844375610352 70.0510177612305 64.3242034912109 124.116172790527 0.0107421996071935 0.0461426004767418 0.030273400247097 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL071W /GEN=STB6 /DB_XREF=GI:6322779 /SEG=NC_001143:+304759,305529 /DEF=Hypothetical ORF /NOTE=Ykl071wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001554 // YKL071W SGDID:S0001554, Chr XI from 304759-305529, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018364 // cdna:Genscan chromosome:SGD1:XI:304759:305529:1 // ensembl // 11 // --- /// GENEFINDER00000023019 // cdna:GeneFinder chromosome:SGD1:XI:304759:305529:1 // ensembl // 11 // --- /// YKL071W // cdna:known chromosome:SGD1:XI:304759:305529:1 gene:YKL071W // ensembl // 11 // --- --- No cerevisiae_gene 1.05584318641699 -1.39733069824446 1.72162561714195 -1.52173571141708 1.267986779953 Max fold change below threshold 4 1.72162561714195 Max fold change below threshold PPPPPP No 3 0 PPPP 0 4 0 No No 3 < x
1776388_at YMR267W.S1 Mitochondrial inorganic pyrophosphatase, required for mitochondrial function and possibly involved in energy generation from inorganic pyrophosphate 1.7216038936986 470.237106323242 623.403106689453 PPA2 9060 // aerobic respiration // inferred from mutant phenotype 5739 // mitochondrion // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from direct assay 4427 // inorganic diphosphatase activity // inferred from sequence similarity /// 4427 // inorganic diphosphatase activity // inferred from mutant phenotype 584.126892089844 403.902923583984 536.5712890625 662.679321289063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR267W /GEN=PPA2 /DB_XREF=GI:6323923 /SEG=NC_001145:+801771,802703 /DEF=Mitochondrial inorganic pyrophosphatase, required for mitochondrial function and possibly involved in energy generation from inorganic pyrophosphate /NOTE=Ppa2p; go_component: mitochondrion [goid GO:0005739] [evidence IMP] [pmid 1648084]; go_function: inorganic diphosphatase activity [goid GO:0004427] [evidence IMP,ISS] [pmid 1648084]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 1648084] --- --- --- --- --- --- S0004880 // PPA2 SGDID:S0004880, Chr XIII from 801771-802703, Verified ORF // sgd // 11 // --- /// GENSCAN00000018938 // cdna:Genscan chromosome:SGD1:XIII:801771:802703:1 // ensembl // 11 // --- /// GENEFINDER00000021833 // cdna:GeneFinder chromosome:SGD1:XIII:801786:802703:1 // ensembl // 11 // --- /// YMR267W // cdna:known chromosome:SGD1:XIII:801771:802703:1 gene:YMR267W // ensembl // 11 // --- --- No cerevisiae_gene -1.10617676964461 -1.44620614999927 1.7216038936986 -1.08862867618287 1.13447836465495 Max fold change below threshold 4 1.7216038936986 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-25srRnae_at AFFX-25srRnae Identified by fungal homology and RT-PCR 1.7214778746071 2174.03405761719 2768.84228515625 --- --- --- --- 3178.22094726563 2501.8515625 1846.21655273438 2359.46362304688 2.97848891932517E-5 2.97848891932517E-5 2.97848891932517E-5 2.97848891932517E-5 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /GEN=25S rRNA /DB_XREF=gb:J01355.1 /NOTE=SIF corresponding to nucleotides 3157-3392 of gb:J01355.1, not 100% identical /DEF=S.cerevisiae 25S rRNA gene and flanks. --- --- --- --- --- --- L10643 // Saccharomyces cerevisiae 25S ribosomal RNA, partial. // gb // 0 // chr12:463694-463982(-) /// M19229 // Yeast (S.cerevisiae) 28S large subunit rRNA, 5' end. // gb // 0 // chr12:463950-464317(-) /// L20827 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:463694-464013(-) /// L20827 // Saccharomyces cerevisiae (NRRL Y-12632) 25S ribosomal RNA fragment. // gb // 0 // chr12:454557-454876(-) /// L10643 // Saccharomyces cerevisiae 25S ribosomal RNA, partial. // gb // 0 // chr12:454557-454845(-) /// M19229 // Yeast (S.cerevisiae) 28S large subunit rRNA, 5' end. // gb // 0 // chr12:454813-455180(-) --- AFFX_control cerevisiae_gene 1.65572711553924 -1.2703475277685 1.58175134984325 -1.7214778746071 -1.34700993743716 Max fold change below threshold 4 1.7214778746071 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774290_at YBR218C.S1 Pyruvate carboxylase isoform, cytoplasmic enzyme that converts pyruvate to oxaloacetate; highly similar to isoform Pyc1p but differentially regulated; mutations in the human homolog are associated with lactic acidosis 1.72141525003206 2769.0087890625 1843.619140625 PYC2 6094 // gluconeogenesis // inferred from mutant phenotype /// 6740 // NADPH regeneration // traceable author statement 5829 // cytosol // inferred from direct assay 4736 // pyruvate carboxylase activity // inferred from mutant phenotype /// 4736 // pyruvate carboxylase activity // inferred from direct assay 1751.533203125 2522.90161132813 3015.11596679688 1935.705078125 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR218C /GEN=PYC2 /DB_XREF=GI:6319695 /SEG=NC_001134:-658664,662206 /DEF=converts pyruvate to oxaloacetate /NOTE=Pyc2p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 2039506]; go_function: pyruvate carboxylase activity [goid GO:0004736] [evidence IDA,IMP] [pmid 2039506]; go_process: NADPH regeneration [goid GO:0006740] [evidence TAS]; go_process: gluconeogenesis [goid GO:0006094] [evidence TAS] --- --- --- --- --- --- S0000422 // PYC2 SGDID:S0000422, Chr II from 662244-658702, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021314 // cdna:Genscan chromosome:SGD1:II:658702:662244:-1 // ensembl // 11 // --- /// GENEFINDER00000022339 // cdna:GeneFinder chromosome:SGD1:II:658702:662244:-1 // ensembl // 11 // --- /// YBR218C // cdna:known chromosome:SGD1:II:658702:662244:-1 gene:YBR218C // ensembl // 11 // --- --- No cerevisiae_gene 1.582285051601 1.44039610943537 1.00467447604498 1.72141525003206 1.10514894874468 Max fold change below threshold 4 1.72141525003206 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779796_at SPCC1281.06c.S1 --- 1.72088375044374 --- --- --- --- 12.704327583313 16.6411552429199 15.6536197662354 16.426420211792 0.194580003619194 0.194580003619194 0.129638999700546 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1281.06c /DEF=acyl-coA desaturase (predicted) --- --- --- --- --- --- SPCC1281.06c // |||acyl-coA desaturase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.72088375044374 1.30988083657241 1.4334502400001 1.23214862522879 1.29297832601294 Max fold change below threshold 4 1.72088375044374 Max fold change below threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778112_at YOR371C.S1 Proposed beta subunit of the heterotrimeric G protein that interacts with the receptor Grp1p, has signaling role in response to nutrients; involved in regulation of pseudohyphal growth through cAMP levels; homolog of Gpb2p 1.72052190028534 690.005493164063 849.165222167969 GPB1 7165 // signal transduction // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay /// 5886 // plasma membrane // inferred from genetic interaction 4871 // signal transducer activity // inferred from physical interaction 843.200805664063 619.897888183594 760.113098144531 855.129638671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR371C /GEN=GPB1 /DB_XREF=GI:6324947 /SEG=NC_001147:-1031485,1034178 /DEF=Proposed beta subunit of the heterotrimeric G protein that interacts with the receptor Grp1p, has signaling role in response to nutrients; involved in regulation of pseudohyphal growth through cAMP levels; homolog of Gpb2p /NOTE=Gpb1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: signal transducer activity [goid GO:0004871] [evidence IPI] [pmid 12150916]; go_process: signal transduction [goid GO:0007165] [evidence IPI] [pmid 12150916] --- --- --- --- --- --- S0005898 // GPB1 SGDID:S0005898, Chr XV from 1034178-1031485, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017819 // cdna:Genscan chromosome:SGD1:XV:1031485:1034178:-1 // ensembl // 11 // --- /// YOR371C // cdna:known chromosome:SGD1:XV:1031485:1034178:-1 gene:YOR371C // ensembl // 11 // --- GENEFINDER00000022645 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.72052190028534 -1.36022532377838 1.30107009756495 -1.10930966420964 1.01414708445211 Max fold change below threshold 4 1.72052190028534 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772400_at YMR079W.S1 Phosphatidylinositol/phosphatidylcholine transfer protein involved in coordinate regulation of PtdIns and PtdCho metabolism, products of which are regulators in Golgi to plasma membrane transport; functionally homologous to mammalian PITPs 1.72032921022376 2173.84240722656 2068.0576171875 SEC14 6893 // Golgi to plasma membrane transport // inferred from mutant phenotype /// 15914 // phospholipid transport // inferred from direct assay /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from genetic interaction /// 46470 // phosphatidylcholine metabolism // traceable author statement /// 46470 // phosphatidylcholine metabolism // inferred from direct assay /// 46488 // phosphatidylinositol metabolism // traceable author statement 5829 // cytosol // inferred from direct assay 8526 // phosphatidylinositol transporter activity // inferred from direct assay 2110.51977539063 1954.4873046875 2393.19750976563 2025.59545898438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR079W /GEN=SEC14 /DB_XREF=GI:6323725 /SEG=NC_001145:+424988,426058 /DEF=Required for vesicle budding from the Golgi /NOTE=Sec14p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 2466847]; go_function: phosphatidylinositol transporter activity [goid GO:0008526] [evidence IDA] [pmid 2215682]; go_process: Golgi to plasma membrane transport [goid GO:0006893] [evidence IMP] [pmid 6094514]; go_process: phospholipid transport [goid GO:0015914] [evidence IDA] [pmid 2215682] --- --- --- --- --- --- S0004684 // SEC14 SGDID:S0004684, Chr XIII from 424988-424996,425153-426058, intron sequence removed, Verified ORF // sgd // 10 // --- /// GENSCAN00000018777 // cdna:Genscan chromosome:SGD1:XIII:425366:426058:1 // ensembl // 10 // --- /// YMR079W // cdna:known chromosome:SGD1:XIII:424988:426058:1 gene:YMR079W // ensembl // 10 // --- --- No cerevisiae_gene 1.72032921022376 -1.07983294152329 -1.28232397801444 1.13393749618986 -1.04192560564331 Max fold change below threshold 4 1.72032921022376 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777357_at YPL179W.S1 Putative protein serine/threonine phosphatase; null mutation enhances efficiency of translational suppressors 1.72022299189195 1640.10162353516 1110.43444824219 PPQ1 6445 // regulation of translation // inferred from mutant phenotype /// 6470 // protein amino acid dephosphorylation // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay 4722 // protein serine/threonine phosphatase activity // inferred from sequence similarity 1098.71655273438 1390.16577148438 1890.03747558594 1122.15234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL179W /GEN=PPQ1 /DB_XREF=GI:6325078 /SEG=NC_001148:+208156,209805 /DEF=Putative protein serine/threonine phosphatase; null mutation enhances efficiency of translational suppressors /NOTE=Ppq1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein serine/threonine phosphatase activity [goid GO:0004722] [evidence ISS] [pmid 8269960]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence ISS] [pmid 8269960]; go_process: regulation of translation [goid GO:0006445] [evidence IMP] [pmid 8269960] --- --- --- --- --- --- S0006100 // PPQ1 SGDID:S0006100, Chr XVI from 208156-209805, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021015 // cdna:GeneFinder chromosome:SGD1:XVI:205508:209805:1 // ensembl // 11 // --- /// GENSCAN00000017049 // cdna:Genscan chromosome:SGD1:XVI:208156:209805:1 // ensembl // 11 // --- /// YPL179W // cdna:known chromosome:SGD1:XVI:208156:209805:1 gene:YPL179W // ensembl // 11 // --- --- No cerevisiae_gene 1.35048328538514 1.26526333659457 -1.08358492157219 1.72022299189195 1.0213301519462 Max fold change below threshold 4 1.72022299189195 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776362_at YDR174W.S1 Chromatin associated high mobility group (HMG) family member involved in genome maintenance; rDNA-binding component of the Pol I transcription system; associates with a 5'-3' DNA helicase and Fpr1p, a prolyl isomerase 1.72017671841851 2312.84057617188 1766.74432373047 HMO1 6276 // plasmid maintenance // inferred from mutant phenotype 790 // nuclear chromatin // inferred from sequence similarity /// 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3697 // single-stranded DNA binding // inferred from direct assay /// 3701 // RNA polymerase I transcription factor activity // inferred from direct assay 1728.14758300781 2217.6015625 2408.07958984375 1805.34106445313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR174W /GEN=HMO1 /DB_XREF=GI:6320379 /SEG=NC_001136:+812104,812844 /DEF=Chromatin associated high mobility group (HMG) family member involved in genome maintenance; rDNA-binding component of the Pol I transcription system; associates with a 5'-3' DNA helicase and Fpr1p, a prolyl isomerase /NOTE=Hmo1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 8969238]; go_component: nuclear chromatin [goid GO:0000790] [evidence ISS] [pmid 8969238]; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 12374750]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8969238]; go_function: RNA polymerase I transcription factor activity [goid GO:0003701] [evidence IDA] [pmid 12374750]; go_function: single-stranded DNA binding [goid GO:0003697] [evidence IDA] [pmid 8969238]; go_process: plasmid maintenance [goid GO:0006276] [evidence IMP] [pmid 8969238] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 9.0 --- S0002581 // HMO1 SGDID:S0002581, Chr IV from 812105-812845, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023728 // cdna:GeneFinder chromosome:SGD1:IV:812105:812845:1 // ensembl // 11 // --- /// GENSCAN00000025230 // cdna:Genscan chromosome:SGD1:IV:812105:812845:1 // ensembl // 11 // --- /// YDR174W // cdna:known chromosome:SGD1:IV:812105:812845:1 gene:YDR174W // ensembl // 11 // --- --- No cerevisiae_gene 1.72017671841851 1.28322464140493 1.07793029377371 1.39344556768267 1.04466833863284 Max fold change below threshold 4 1.72017671841851 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775989_at YDR139C.S1 Ubiquitin-like protein with similarity to mammalian NEDD8; conjugation (neddylation) substrates include the cullins Cdc53p, Rtt101p, and Cul3p; activated by Ula1p and Uba3p (E1 enzyme pair); conjugation mediated by Ubc12p (E2 enzyme) 1.71848756905425 243.568328857422 487.13883972168 RUB1 338 // protein deneddylation // inferred from genetic interaction /// 338 // protein deneddylation // inferred from direct assay /// 45116 // protein neddylation // inferred from genetic interaction /// 45116 // protein neddylation // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 31386 // protein tag // inferred from direct assay 388.569244384766 261.025482177734 226.111175537109 585.708435058594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR139C /GEN=RUB1 /DB_XREF=GI:9755329 /SEG=NC_001136:-733612,733918 /DEF=Related to ubiquitin (53% identical). Homolog of mammalian ubiquitin-like protein NEDD8. Matures by proteolytic removal of C-terminal asparagine (ASN) residue. Requires the proteins ULA1 & UBA3 for activation /NOTE=Rub1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 9545234]; go_process: NEDD8 class-dependent protein catabolism [goid GO:0019942] [evidence IDA] [pmid 9545234] --- --- --- --- --- --- S0002546 // RUB1 SGDID:S0002546, Chr IV from 733919-733771,733697-733613, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YDR139C // cdna:known chromosome:SGD1:IV:733613:733919:-1 gene:YDR139C // ensembl // 11 // --- --- No cerevisiae_gene -1.02432151145349 -1.48862571248958 1.66586544484069 -1.71848756905425 1.50734635723927 Max fold change below threshold 4 1.71848756905425 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775137_s_at YPL277C.S1 Hypothetical protein /// Hypothetical protein 1.71848628690774 1901.84283447266 1307.28802490234 --- --- 5624 // membrane fraction // inferred from direct assay --- 1331.72180175781 1515.14001464844 2288.54565429688 1282.85424804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL277C /GEN=HSP32 /DB_XREF=GI:6324978 /SEG=NC_001148:-15405,16868 /DEF=Hypothetical ORF /NOTE=Ypl277cp; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 11935221]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005916 // span:7-24 // numtm:1 /// S0006198 // span:7-24 // numtm:1 S0005916 // YOR389W SGDID:S0005916, Chr XV from 1074209-1076083, Uncharacterized ORF // sgd // 11 // --- /// S0006198 // YPL277C SGDID:S0006198, Chr XVI from 16868-15405, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022902 // cdna:GeneFinder chromosome:SGD1:XV:1074209:1076083:1 // ensembl // 11 // --- /// GENSCAN00000017834 // cdna:Genscan chromosome:SGD1:XV:1074734:1076083:1 // ensembl // 11 // --- /// GENSCAN00000016970 // cdna:Genscan chromosome:SGD1:XVI:15405:16340:-1 // ensembl // 11 // --- /// GENEFINDER00000020967 // cdna:GeneFinder chromosome:SGD1:XVI:15405:16868:-1 // ensembl // 11 // --- /// YOR389W // cdna:known chromosome:SGD1:XV:1074209:1076083:1 gene:YOR389W // ensembl // 11 // --- /// YPL277C // cdna:known chromosome:SGD1:XVI:15405:16868:-1 gene:YPL277C // ensembl // 11 // --- --- No cerevisiae_gene 1.04894117172565 1.13773012700439 1.27693402013756 1.71848628690774 -1.03809283383934 Max fold change below threshold 4 1.71848628690774 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773977_at YNR028W.S1 Peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; similarity to Cpr4p suggests a potential role in the secretory pathway 1.71801881442159 163.572975158691 212.848976135254 CPR8 --- 324 // vacuole (sensu Fungi) // inferred from direct assay 3755 // peptidyl-prolyl cis-trans isomerase activity // inferred from sequence similarity 234.122924804688 136.274948120117 190.871002197266 191.57502746582 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR028W /GEN=CPR8 /DB_XREF=GI:6324355 /SEG=NC_001146:+676176,677102 /DEF=Peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; similarity to Cpr4p suggests a potential role in the secretory pathway /NOTE=Cpr8p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: peptidyl-prolyl cis-trans isomerase activity [goid GO:0003755] [evidence ISS] [pmid 9371805]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005311 // span:5-24,267-289 // numtm:2 S0005311 // CPR8 SGDID:S0005311, Chr XIV from 676177-677103, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020620 // cdna:GeneFinder chromosome:SGD1:XIV:676177:677103:1 // ensembl // 11 // --- /// GENSCAN00000020058 // cdna:Genscan chromosome:SGD1:XIV:676213:677103:1 // ensembl // 11 // --- /// YNR028W // cdna:known chromosome:SGD1:XIV:676177:677103:1 gene:YNR028W // ensembl // 11 // --- --- No cerevisiae_gene 1.2581350515007 -1.71801881442159 -1.42547731278386 -1.22660289991416 -1.22209521721957 Max fold change below threshold 4 1.71801881442159 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779445_at YDR135C.S1 Vacuolar glutathione S-conjugate transporter of the ATP-binding cassette family, has a role in detoxifying metals such as cadmium, mercury, and arsenite; also transports unconjugated bilirubin; similar to human cystic fibrosis protein CFTR 1.71799544578992 458.725433349609 676.488220214844 YCF1 10038 // response to metal ion // inferred from direct assay /// 10038 // response to metal ion // traceable author statement /// 15723 // bilirubin transport // inferred from mutant phenotype /// 15723 // bilirubin transport // inferred from genetic interaction 5774 // vacuolar membrane // inferred from direct assay 15127 // bilirubin transporter activity // inferred from mutant phenotype /// 15127 // bilirubin transporter activity // inferred from genetic interaction /// 15431 // glutathione S-conjugate-exporting ATPase activity // inferred from direct assay 657.439758300781 382.678405761719 534.7724609375 695.536682128906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR135C /GEN=YCF1 /DB_XREF=GI:6320339 /SEG=NC_001136:-722998,727545 /DEF=Vacuolar glutathione S-conjugate transporter of the ATP-binding cassette family, has a role in detoxifying metals such as cadmium, mercury, and arsenite; also transports unconjugated bilirubin; similar to human cystic fibrosis protein CFTR /NOTE=Ycf1p; go_component: vacuolar membrane [goid GO:0005774] [evidence IDA] [pmid 8692889]; go_function: bilirubin transporter activity [goid GO:0015127] [evidence IGI,IMP] [pmid 10790694]; go_function: conjugate transporter activity [goid GO:0015431] [evidence IDA] [pmid 12755704]; go_process: bilirubin transport [goid GO:0015723] [evidence IGI,IMP] [pmid 10790694]; go_process: response to metal ion [goid GO:0010038] [evidence IDA] [pmid 12755704]; go_process: response to metal ion [goid GO:0010038] [evidence TAS] [pmid 9217966] --- --- --- --- --- S0002542 // span:28-50,71-93,103-122,129-148,163-185,346-368,447-466,530-552,567-589,950-972,992-1014,1062-1084,1089-1106,1175-1197 // numtm:14 S0002542 // YCF1 SGDID:S0002542, Chr IV from 727546-722999, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023580 // cdna:GeneFinder chromosome:SGD1:IV:722999:727321:-1 // ensembl // 11 // --- /// GENSCAN00000025196 // cdna:Genscan chromosome:SGD1:IV:722999:727546:-1 // ensembl // 11 // --- /// YDR135C // cdna:known chromosome:SGD1:IV:722999:727546:-1 gene:YDR135C // ensembl // 11 // --- --- No cerevisiae_gene -1.05085829662018 -1.71799544578992 -1.03487914392674 -1.22938222575679 1.05794739874964 Max fold change below threshold 4 1.71799544578992 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772920_at YDR236C.S1 Riboflavin kinase, phosphorylates riboflavin to form riboflavin monophosphate (FMN), which is a necessary cofactor for many enzymes; localizes to microsomes and to the mitochondrial inner membrane 1.71794212328452 449.210678100586 650.112854003906 FMN1 9398 // FMN biosynthesis // inferred from direct assay /// 9398 // FMN biosynthesis // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay /// 5792 // microsome // inferred from direct assay 3919 // FMN adenylyltransferase activity // inferred from direct assay /// 8531 // riboflavin kinase activity // inferred from direct assay /// 8531 // riboflavin kinase activity // inferred from mutant phenotype 632.532836914063 368.192169189453 530.229187011719 667.69287109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR236C /GEN=FMN1 /DB_XREF=GI:6320442 /SEG=NC_001136:-935228,935884 /DEF=Riboflavin kinase, phosphorylates riboflavin to form riboflavin monophosphate (FMN), which is a necessary cofactor for many enzymes; localizes to microsomes and to the mitochondrial inner membrane /NOTE=Fmn1p; go_component: microsome [goid GO:0005792] [evidence IDA] [pmid 10887197]; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 10887197]; go_function: FMN adenylyltransferase activity [goid GO:0003919] [evidence IDA] [pmid 10887197]; go_function: riboflavin kinase activity [goid GO:0008531] [evidence IDA,IMP] [pmid 10887197]; go_process: FMN biosynthesis [goid GO:0009398] [evidence IDA,IMP] [pmid 10887197] --- --- --- --- --- S0002644 // span:4-21 // numtm:1 S0002644 // FMN1 SGDID:S0002644, Chr IV from 935886-935230, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025281 // cdna:Genscan chromosome:SGD1:IV:935230:935829:-1 // ensembl // 11 // --- /// YDR236C // cdna:known chromosome:SGD1:IV:935230:935886:-1 gene:YDR236C // ensembl // 11 // --- --- No cerevisiae_gene -1.56430816307093 -1.71794212328452 1.07715890645345 -1.19294232080831 1.05558610103346 Max fold change below threshold 4 1.71794212328452 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776672_at YOL016C.S1 Calmodulin-dependent protein kinase; may play a role in stress response, many CA++/calmodulan dependent phosphorylation substrates demonstrated in vitro, amino acid sequence similar to Cmk1p and mammalian Cam Kinase II 1.71769787324339 2297.36810302734 1709.30474853516 CMK2 6468 // protein amino acid phosphorylation // inferred from direct assay /// 7165 // signal transduction // non-traceable author statement 5737 // cytoplasm // inferred from direct assay 4685 // calcium- and calmodulin-dependent protein kinase activity // inferred from direct assay 1684.77917480469 2044.00646972656 2550.72973632813 1733.83032226563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL016C /GEN=CMK2 /DB_XREF=GI:6324557 /SEG=NC_001147:-294777,296120 /DEF=Calmodulin-dependent protein kinase /NOTE=Cmk2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: calcium/calmodulin-dependent protein kinase activity [goid GO:0004685] [evidence IDA] [pmid 2061341]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 2061341]; go_process: signal transduction [goid GO:0007165] [evidence NAS] [pmid 2061341] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-65 /// hanks // 2.1.12 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; CMK2 // 1.0E-155 --- --- S0005376 // CMK2 SGDID:S0005376, Chr XV from 296120-294777, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017455 // cdna:Genscan chromosome:SGD1:XV:294777:296120:-1 // ensembl // 11 // --- /// GENEFINDER00000022655 // cdna:GeneFinder chromosome:SGD1:XV:294777:296120:-1 // ensembl // 11 // --- /// YOL016C // cdna:known chromosome:SGD1:XV:294777:296120:-1 gene:YOL016C // ensembl // 11 // --- --- No cerevisiae_gene -1.71769787324339 1.21321921608125 1.48051411886541 1.51398460669116 1.02911428880086 Max fold change below threshold 4 1.71769787324339 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778751_at YHR059W.S1 Protein of unknown function, required for survival upon exposure to K1 killer toxin 1.71767142428713 189.250640869141 306.577255249023 FYV4 --- 5739 // mitochondrion // inferred from direct assay --- 292.333465576172 170.19172668457 208.309555053711 320.821044921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR059W /GEN=FYV4 /DB_XREF=GI:6321850 /SEG=NC_001140:+220109,220501 /DEF=Protein of unknown function, required for survival upon exposure to K1 killer toxin /NOTE=Fyv4p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001101 // FYV4 SGDID:S0001101, Chr VIII from 220109-220501, Verified ORF // sgd // 11 // --- /// YHR059W // cdna:known chromosome:SGD1:VIII:220109:220501:1 gene:YHR059W // ensembl // 11 // --- --- No cerevisiae_gene 1.37528659803242 -1.71767142428713 1.16183624428096 -1.40336080839305 1.09744891605057 Max fold change below threshold 4 1.71767142428713 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769378_at YFL045C.S1 Phosphomannomutase, involved in synthesis of GDP-mannose and dolichol-phosphate-mannose; required for folding and glycosylation of secretory proteins in the ER lumen 1.71758483682537 1799.79638671875 1537.13519287109 SEC53 45047 // protein-ER targeting // inferred from mutant phenotype 5829 // cytosol // inferred from direct assay 4615 // phosphomannomutase activity // inferred from direct assay 1508.640625 1726.06079101563 1873.53198242188 1565.62976074219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL045C /GEN=SEC53 /DB_XREF=GI:14318474 /SEG=NC_001138:-43628,44392 /DEF=involved in synthesis of GDP-mannose and dolichol-phosphate-mannose; required for protein assembly in endoplasmic reticulum /NOTE=Sec53p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 3905826]; go_function: phosphomannomutase activity [goid GO:0004615] [evidence IDA] [pmid 3288631]; go_process: protein-ER targeting [goid GO:0045047] [evidence IMP] [pmid 6368572] --- --- --- --- --- --- S0001849 // SEC53 SGDID:S0001849, Chr VI from 44392-43628, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018526 // cdna:GeneFinder chromosome:SGD1:VI:43628:44392:-1 // ensembl // 11 // --- /// GENSCAN00000023203 // cdna:Genscan chromosome:SGD1:VI:43628:44392:-1 // ensembl // 11 // --- /// YFL045C // cdna:known chromosome:SGD1:VI:43628:44392:-1 gene:YFL045C // ensembl // 11 // --- --- No cerevisiae_gene 1.71758483682537 1.14411660564664 -1.12067705710266 1.24186764652574 1.03777515652025 Max fold change below threshold 4 1.71758483682537 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771804_at YOL022C.S1 Protein required for cell viability 1.7174993588321 351.518676757813 606.048278808594 --- --- 5737 // cytoplasm // inferred from direct assay --- 558.3359375 325.086547851563 377.950805664063 653.760620117188 0.014160200022161 0.0239257998764515 0.0239257998764515 0.00585938012227416 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL022C /GEN=IFM1 /DB_XREF=GI:6324551 /SEG=NC_001147:-280272,281498 /DEF=Protein required for cell viability /NOTE=Yol022cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005382 // YOL022C SGDID:S0005382, Chr XV from 281498-280272, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017449 // cdna:Genscan chromosome:SGD1:XV:280272:281498:-1 // ensembl // 11 // --- /// GENEFINDER00000022606 // cdna:GeneFinder chromosome:SGD1:XV:280272:281060:-1 // ensembl // 11 // --- /// YOL022C // cdna:known chromosome:SGD1:XV:280272:281498:-1 gene:YOL022C // ensembl // 11 // --- --- No cerevisiae_gene 1.08629474530203 -1.7174993588321 1.00386257818294 -1.47727145737657 1.1709090821638 Max fold change below threshold 4 1.7174993588321 Max fold change below threshold PPPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1772282_at YER177W.S1 14-3-3 protein, major isoform; binds proteins and DNA, involved in regulation of many processes including exocytosis and vesicle transport, Ras/MAPK signaling during pseudohyphal development, rapamycin-sensitive signaling, and others 1.7173239749268 3896.28466796875 2892.44873046875 BMH1 77 // DNA damage checkpoint // inferred from mutant phenotype /// 1402 // signal transduction during filamentous growth // inferred from genetic interaction /// 5977 // glycogen metabolism // inferred from genetic interaction /// 7124 // pseudohyphal growth // inferred from genetic interaction /// 7265 // Ras protein signal transduction // inferred from genetic interaction /// 30437 // sporulation (sensu Fungi) // inferred from genetic interaction 5634 // nucleus // inferred from direct assay 3677 // DNA binding // inferred from direct assay /// 5515 // protein binding // traceable author statement 2794.66870117188 4799.3515625 2993.2177734375 2990.22875976563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER177W /GEN=BMH1 /DB_XREF=GI:6321025 /SEG=NC_001137:+545606,546409 /DEF=14-3-3 protein, major isoform; binds proteins and DNA, involved in regulation of many processes including exocytosis and vesicle transport, Ras/MAPK signaling during pseudohyphal development, rapamycin-sentitive signaling, and others /NOTE=Bmh1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12167636]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 12167636]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 11447594]; go_process: RAS protein signal transduction [goid GO:0007265] [evidence IGI] [pmid 9215628]; go_process: glycogen metabolism [goid GO:0005977] [evidence IGI] [pmid 9215628]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IGI] [pmid 9215628]; go_process: signal transduction during filamentous growth [goid GO:0001402] [evidence IGI] [pmid 9215628]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IGI] [pmid 9215628] --- --- --- --- --- --- S0000979 // BMH1 SGDID:S0000979, Chr V from 545606-546409, Verified ORF // sgd // 11 // --- /// GENSCAN00000016956 // cdna:Genscan chromosome:SGD1:V:545606:546409:1 // ensembl // 11 // --- /// GENEFINDER00000019739 // cdna:GeneFinder chromosome:SGD1:V:545606:546409:1 // ensembl // 11 // --- /// YER177W // cdna:known chromosome:SGD1:V:545606:546409:1 gene:YER177W // ensembl // 11 // --- --- No cerevisiae_gene 1.20908969479503 1.7173239749268 -1.16683072887759 1.07104565638938 1.06997611506213 Max fold change below threshold 4 1.7173239749268 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778627_at YIL021W.S1 RNA polymerase II third largest subunit B44, part of central core; similar to prokaryotic alpha subunit 1.71730395069403 427.478363037109 673.251434326172 RPB3 6366 // transcription from RNA polymerase II promoter // traceable author statement 5665 // DNA-directed RNA polymerase II, core complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 624.406066894531 363.596710205078 491.360015869141 722.096801757813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL021W /GEN=RPB3 /DB_XREF=GI:6322168 /SEG=NC_001141:+312903,313859 /DEF=RNA polymerase II core subunit /NOTE=Rpb3p; go_component: DNA-directed RNA polymerase II, core complex [goid GO:0005665] [evidence TAS] [pmid 9774381]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 9774381]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence TAS] --- --- --- --- --- --- S0001283 // RPB3 SGDID:S0001283, Chr IX from 312903-313859, Verified ORF // sgd // 11 // --- /// GENSCAN00000016459 // cdna:Genscan chromosome:SGD1:IX:312903:313859:1 // ensembl // 11 // --- /// GENEFINDER00000019123 // cdna:GeneFinder chromosome:SGD1:IX:312903:313859:1 // ensembl // 11 // --- /// YIL021W // cdna:known chromosome:SGD1:IX:312903:313859:1 gene:YIL021W // ensembl // 11 // --- YIL021C-A // ensembl // 4 // Negative Strand Matching Probes /// YIL020C-A // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene 1.31247360162279 -1.71730395069403 1.08289469221191 -1.27077101662424 1.15645385277748 Max fold change below threshold 4 1.71730395069403 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772220_at YDR178W.S1 Membrane anchor subunit of succinate dehydrogenase (Sdh1p, Sdh2p, Sdh3p, Sdh4p), which couples the oxidation of succinate to the transfer of electrons to ubiquinone 1.71706612866483 4139.56970214844 2569.50366210938 SDH4 6099 // tricarboxylic acid cycle // traceable author statement /// 6121 // mitochondrial electron transport, succinate to ubiquinone // traceable author statement 5749 // respiratory chain complex II (sensu Eukaryota) // traceable author statement 8177 // succinate dehydrogenase (ubiquinone) activity // traceable author statement /// 8177 // succinate dehydrogenase (ubiquinone) activity // inferred from mutant phenotype 2683.541015625 4607.8173828125 3671.32202148438 2455.46630859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR178W /GEN=SDH4 /DB_XREF=GI:6320383 /SEG=NC_001136:+817944,818489 /DEF=Yeast succinate dehydrogenase (SDH) is a tetramer of non-equivalent subunits--Sdh1p, Sdh2p, Sdh3p, Sdh4p--that couples the oxidation of succinate to the transfer of electrons to ubiquinone. /NOTE=Sdh4p; go_component: respiratory chain complex II (sensu Eukarya) [goid GO:0005749] [evidence TAS] [pmid 9929002]; go_function: succinate dehydrogenase (ubiquinone) activity [goid GO:0008177] [evidence IMP,TAS] [pmid 9929002]; go_process: mitochondrial electron transport, succinate to ubiquinone [goid GO:0006121] [evidence TAS] [pmid 9929002]; go_process: tricarboxylic acid cycle [goid GO:0006099] [evidence TAS] [pmid 9175438] --- --- --- --- --- S0002585 // span:74-96,132-149 // numtm:2 S0002585 // SDH4 SGDID:S0002585, Chr IV from 817945-818490, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023720 // cdna:GeneFinder chromosome:SGD1:IV:817945:818490:1 // ensembl // 11 // --- /// YDR178W // cdna:known chromosome:SGD1:IV:817945:818490:1 gene:YDR178W // ensembl // 11 // --- --- No cerevisiae_gene -1.18381310549509 1.71706612866483 1.00413872761692 1.36808865603618 -1.09288447828953 Max fold change below threshold 4 1.71706612866483 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770789_at SPAC19A8.13.S1 --- 1.71643799089434 --- --- --- --- 4.47246408462524 2.74565720558167 6.42072248458862 2.64636611938477 0.274170011281967 0.466064006090164 0.219482004642487 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19A8.13 /DEF=U1 snRNP associated (predicted) --- --- --- --- --- --- SPAC19A8.13 // |||U1 snRNP associated |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.71643799089434 -1.62892296807232 -1.33060910940306 1.43561186028543 -1.69003980661036 Max fold change below threshold 4 1.71643799089434 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774085_at YJL178C.S1 Type II membrane protein that binds phosphatidylinositol 3-phosphate, required for the cytoplasm-to-vacuole targeting (Cvt) pathway 1.71639740847864 1270.97637939453 2088.48986816406 ATG27 16050 // vesicle organization and biogenesis // inferred from mutant phenotype 16020 // membrane // inferred from direct assay /// 16020 // membrane // inferred from sequence similarity 19887 // protein kinase regulator activity // inferred from mutant phenotype 2175.08911132813 1274.71179199219 1267.24096679688 2001.890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL178C /GEN=ATG27 /DB_XREF=GI:42742253 /SEG=NC_001142:-89280,90095 /DEF=Type II membrane protein that binds phosphatidylinositol 3-phosphate, required for the cytoplasm-to-vacuole targeting (Cvt) pathway /NOTE=Atg27p; go_component: membrane [goid GO:0016020] [evidence IDA,ISS] [pmid 12186856]; go_function: protein kinase regulator activity [goid GO:0019887] [evidence IMP] [pmid 12186856]; go_process: vesicle organization and biogenesis [goid GO:0016050] [evidence IMP] [pmid 12186856] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 2.79999995231628 S0003714 // span:199-221 // numtm:1 S0003714 // ATG27 SGDID:S0003714, Chr X from 90095-89280, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024302 // cdna:GeneFinder chromosome:SGD1:X:89280:90095:-1 // ensembl // 11 // --- /// YJL178C // cdna:known chromosome:SGD1:X:89280:90095:-1 gene:YJL178C // ensembl // 11 // --- --- No cerevisiae_gene -1.21819891757462 -1.70633795418867 -1.13925165889501 -1.71639740847864 -1.08651745713037 Max fold change below threshold 4 1.71639740847864 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772128_at SPAC1556.06.S1 --- 1.7162741489013 --- --- --- --- 8.05398654937744 7.80407285690308 4.92650270462036 6.99308252334595 0.0676269978284836 0.0676269978284836 0.018554700538516 0.0461426004767418 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1556.06 /GEN=meu1 /DEF=meiotic expression upregulated (PMID 11376151) --- --- --- --- --- --- AB017034 // Schizosaccharomyces pombe mRNA for Meu1, complete cds. // gb // 11 // --- /// SPAC1556.06 // |meu1||meiotic expression upregulated |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- AB017033 // gb // 3 // Cross Hyb Matching Probes No No -1.7162741489013 -1.0320234955589 -1.23378617259999 -1.63482840308277 -1.15170763715282 Max fold change below threshold 4 1.7162741489013 Max fold change below threshold APAAPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1772133_at YDR244W.S1 Peroxisomal membrane signal receptor for C-terminal tripeptide signal sequence (PTS1) of peroxisomal matrix proteins, required for peroxisomal matrix protein import, tetratricopeptide repeat protein, also involved in PTS1-independent import 1.71612154240961 1074.95529174805 923.152740478516 PEX5 6625 // protein-peroxisome targeting // inferred from physical interaction /// 7031 // peroxisome organization and biogenesis // traceable author statement 5777 // peroxisome // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 268 // peroxisome targeting sequence binding // inferred from direct assay /// 5051 // peroxisome targeting signal receptor activity // traceable author statement /// 5052 // peroxisome targeting signal-1 receptor activity // inferred from physical interaction 894.032287597656 1284.59362792969 865.316955566406 952.273193359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR244W /GEN=PEX5 /DB_XREF=GI:6320450 /SEG=NC_001136:+950555,952393 /DEF=Essential for import of proteins with SKL-like import signal into peroxisomal matrix /NOTE=Pex5p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 8858166]; go_component: peroxisome [goid GO:0005777] [evidence IDA] [pmid 8858166]; go_function: peroxisome targeting sequence binding [goid GO:0000268] [evidence IDA] [pmid 7980572]; go_function: peroxisome targeting signal receptor activity [goid GO:0005051] [evidence TAS]; go_function: peroxisome targeting signal-1 receptor activity [goid GO:0005052] [evidence IPI] [pmid 7980572]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence TAS]; go_process: protein-peroxisome targeting [goid GO:0006625] [evidence IPI] [pmid 7980572] --- --- --- --- --- --- S0002652 // PEX5 SGDID:S0002652, Chr IV from 950557-952395, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023741 // cdna:GeneFinder chromosome:SGD1:IV:950557:952395:1 // ensembl // 11 // --- /// GENSCAN00000025287 // cdna:Genscan chromosome:SGD1:IV:950557:952395:1 // ensembl // 11 // --- /// YDR244W // cdna:known chromosome:SGD1:IV:950557:952395:1 gene:YDR244W // ensembl // 11 // --- --- No cerevisiae_gene -1.71612154240961 1.436853730844 1.21416415065035 -1.03318475599782 1.06514407429089 Max fold change below threshold 4 1.71612154240961 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771365_at SPAC8F11.08c.S1 --- 1.71542531287185 --- --- --- --- 15.2615337371826 22.6614513397217 9.35270881652832 20.3579292297363 0.303710997104645 0.219482004642487 0.274170011281967 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC8F11.08c /DEF=esteraselipase --- --- --- --- --- --- SPAC8F11.08c // |||esterase/lipase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.17596722289578 1.48487378332822 1.71542531287185 -1.6317768505967 1.33393730802672 Max fold change below threshold 4 1.71542531287185 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770134_at YBL095W.S1 Hypothetical protein 1.71514952201625 1557.57641601563 2343.86474609375 --- --- 5739 // mitochondrion // inferred from direct assay --- 2379.74609375 1562.4306640625 1552.72216796875 2307.9833984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL095W /GEN=BRN1 /DB_XREF=GI:6319374 /SEG=NC_001134:+43274,44086 /DEF=Hypothetical ORF /NOTE=Ybl095wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000191 // YBL095W SGDID:S0000191, Chr II from 43274-44086, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021064 // cdna:Genscan chromosome:SGD1:II:43274:44086:1 // ensembl // 11 // --- /// GENEFINDER00000022358 // cdna:GeneFinder chromosome:SGD1:II:43274:44086:1 // ensembl // 11 // --- /// YBL095W // cdna:known chromosome:SGD1:II:43274:44086:1 gene:YBL095W // ensembl // 11 // --- YBL094C // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene -1.71514952201625 -1.52310508778827 1.11646596439681 -1.53262840116668 -1.03109324588777 Max fold change below threshold 4 1.71514952201625 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772338_at YML070W.S1 Dihydroxyacetone kinase, required for detoxification of dihydroxyacetone (DHA); involved in stress adaptation 1.71385177942555 4040.2783203125 5295.9423828125 DAK1 6950 // response to stress // inferred from mutant phenotype /// 19563 // glycerol catabolism // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay 4371 // glycerone kinase activity // inferred from direct assay /// 4371 // glycerone kinase activity // inferred from sequence similarity 5842.2412109375 4615.6123046875 3464.9443359375 4749.6435546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML070W /GEN=DAK1 /DB_XREF=GI:6323570 /SEG=NC_001145:+133475,135229 /DEF=putative dihydroxyacetone kinase /NOTE=Dak1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: glycerone kinase activity [goid GO:0004371] [evidence IDA] [pmid 12401799]; go_function: glycerone kinase activity [goid GO:0004371] [evidence ISS] [pmid 9038161]; go_process: glycerol catabolism [goid GO:0019563] [evidence ISS] [pmid 9038161]; go_process: response to stress [goid GO:0006950] [evidence IMP] [pmid 12401799] --- --- --- --- --- --- S0004535 // DAK1 SGDID:S0004535, Chr XIII from 133475-135229, Verified ORF // sgd // 11 // --- /// GENSCAN00000018657 // cdna:Genscan chromosome:SGD1:XIII:133475:135229:1 // ensembl // 11 // --- /// GENEFINDER00000021844 // cdna:GeneFinder chromosome:SGD1:XIII:133475:135229:1 // ensembl // 11 // --- /// YML070W // cdna:known chromosome:SGD1:XIII:133475:135229:1 gene:YML070W // ensembl // 11 // --- --- No cerevisiae_gene -1.71385177942555 -1.26575648587388 -1.17270582857313 -1.68609958617323 -1.23003782150593 Max fold change below threshold 4 1.71385177942555 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769721_at YDR331W.S1 ER membrane glycoprotein subunit of the glycosylphosphatidylinositol transamidase complex that adds glycosylphosphatidylinositol (GPI) anchors to newly synthesized proteins; human PIG-K protein is a functional homolog 1.71376857315866 229.328262329102 346.374923706055 GPI8 16255 // attachment of GPI anchor to protein // inferred from mutant phenotype 42765 // GPI-anchor transamidase complex // inferred from physical interaction 3923 // GPI-anchor transamidase activity // inferred from mutant phenotype /// 3923 // GPI-anchor transamidase activity // inferred from physical interaction 329.072540283203 192.016906738281 266.639617919922 363.677307128906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR331W /GEN=GPI8 /DB_XREF=GI:6320538 /SEG=NC_001136:+1129579,1130814 /DEF=ER membrane glycoprotein subunit of the glycosylphosphatidylinositol transamidase complex that adds glycosylphosphatidylinositol (GPI) anchors to newly synthesized proteins; human PIG-K protein is a functional homolog /NOTE=Gpi8p; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA] [pmid 11598210]; go_function: GPI-anchor transamidase activity [goid GO:0003923] [evidence IMP,IPI] [pmid 11598210]; go_process: attachment of GPI anchor to protein [goid GO:0016255] [evidence IMP] [pmid 11598210] --- --- --- --- --- S0002739 // span:380-397 // numtm:1 S0002739 // GPI8 SGDID:S0002739, Chr IV from 1129581-1130816, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023860 // cdna:GeneFinder chromosome:SGD1:IV:1129581:1130816:1 // ensembl // 11 // --- /// GENSCAN00000025360 // cdna:Genscan chromosome:SGD1:IV:1129743:1130816:1 // ensembl // 11 // --- /// YDR331W // cdna:known chromosome:SGD1:IV:1129581:1130816:1 gene:YDR331W // ensembl // 11 // --- --- No cerevisiae_gene -1.11561300705948 -1.71376857315866 1.19820414430093 -1.2341472090694 1.10515847604884 Max fold change below threshold 4 1.71376857315866 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776761_at YOR211C.S1 Mitochondrial GTPase related to dynamin, present in a complex containing Ugo1p and Fzo1p; required for normal morphology of cristae and for stability of Tim11p; homolog of human OPA1 involved in autosomal dominant optic atrophy 1.71347926743878 687.757598876953 1099.39916992188 MGM1 2 // mitochondrial genome maintenance // inferred from mutant phenotype /// 7005 // mitochondrion organization and biogenesis // traceable author statement /// 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype /// 8053 // mitochondrial fusion // inferred from mutant phenotype /// 8053 // mitochondrial fusion // inferred from physical interaction 5758 // mitochondrial intermembrane space // inferred from direct assay 3924 // GTPase activity // traceable author statement 1023.86608886719 597.536315917969 777.978881835938 1174.93225097656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR211C /GEN=MGM1 /DB_XREF=GI:6324785 /SEG=NC_001147:-738924,741632 /DEF=involved in the propagation of functional mitochondria yeast /NOTE=Mgm1p; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence IDA] [pmid 11038181]; go_function: GTPase activity [goid GO:0003924] [evidence TAS] [pmid 9891785]; go_process: mitochondrial fusion [goid GO:0008053] [evidence IMP,IPI] [pmid 12808034]; go_process: mitochondrial genome maintenance [goid GO:0000002] [evidence IMP] [pmid 1532158]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence TAS] [pmid 9891785] --- --- --- --- --- --- S0005737 // MGM1 SGDID:S0005737, Chr XV from 741632-738924, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017626 // cdna:Genscan chromosome:SGD1:XV:738924:741329:-1 // ensembl // 11 // --- /// GENEFINDER00000022815 // cdna:GeneFinder chromosome:SGD1:XV:738924:741329:-1 // ensembl // 11 // --- /// YOR211C // cdna:known chromosome:SGD1:XV:738924:741632:-1 gene:YOR211C // ensembl // 11 // --- --- No cerevisiae_gene -1.48865737745681 -1.71347926743878 1.05362472848024 -1.31605897380014 1.14754484375639 Max fold change below threshold 4 1.71347926743878 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779977_at YOR216C.S1 Golgi matrix protein involved in the structural organization of the cis-Golgi; interacts genetically with COG3 and USO1 1.71313167557 307.699127197266 462.645736694336 RUD3 6888 // ER to Golgi transport // inferred from genetic interaction 5794 // Golgi apparatus // non-traceable author statement --- 422.541198730469 308.471374511719 306.926879882813 502.750274658203 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR216C /GEN=RUD3 /DB_XREF=GI:6324790 /SEG=NC_001147:-747525,748979 /DEF=Novel matrix protein that is involved in the structural organization of the cis-Golgi. Relieves uso1-1 transport defect; golgin-160 related protein. /NOTE=Rud3p; go_component: Golgi apparatus [goid GO:0005794] [evidence NAS] [pmid 10512869]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IGI] [pmid 10512869] --- --- --- --- scop // a.2.7.Seryl-tRNA synthetase (SerRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) // 2.20000004768372 --- S0005742 // RUD3 SGDID:S0005742, Chr XV from 748979-747525, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017630 // cdna:Genscan chromosome:SGD1:XV:747525:748979:-1 // ensembl // 11 // --- /// GENEFINDER00000022664 // cdna:GeneFinder chromosome:SGD1:XV:747525:748979:-1 // ensembl // 11 // --- /// YOR216C // cdna:known chromosome:SGD1:XV:747525:748979:-1 gene:YOR216C // ensembl // 11 // --- --- No cerevisiae_gene -1.71313167557 -1.36979063097609 1.20777295402298 -1.37668358956309 1.18982545647318 Max fold change below threshold 4 1.71313167557 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777168_at YOR196C.S1 Protein involved in biosynthesis of the coenzyme lipoic acid, has similarity to E. coli lipoic acid synthase 1.71306363826371 1014.81039428711 713.712066650391 LIP5 9105 // lipoic acid biosynthesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 17140 // lipoic acid synthase activity // inferred from sequence similarity 663.767761230469 892.544372558594 1137.07641601563 763.656372070313 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR196C /GEN=LIP5 /DB_XREF=GI:6324770 /SEG=NC_001147:-715593,716837 /DEF=Involved in lipoic acid metabolism /NOTE=Lip5p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: catalytic activity [goid GO:0003824] [evidence IMP,ISS] [pmid 8349643]; go_process: fatty acid metabolism [goid GO:0006631] [evidence IMP] [pmid 8349643] --- --- --- --- --- --- S0005722 // LIP5 SGDID:S0005722, Chr XV from 716837-715593, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017615 // cdna:Genscan chromosome:SGD1:XV:715593:716837:-1 // ensembl // 11 // --- /// GENEFINDER00000022858 // cdna:GeneFinder chromosome:SGD1:XV:715593:716837:-1 // ensembl // 11 // --- /// YOR196C // cdna:known chromosome:SGD1:XV:715593:716837:-1 gene:YOR196C // ensembl // 11 // --- --- No cerevisiae_gene -1.06153434836872 1.34466363793268 1.22589585028134 1.71306363826371 1.15048728888953 Max fold change below threshold 4 1.71306363826371 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779296_at YGR212W.S1 N-acetyltransferase, confers resistance to the sphingolipid biosynthesis inhibitor myriocin (ISP-1) by converting it into N-acetyl-myriocin, co-operates with Ypk1p in mediating resistance to myriocin 1.71265007930605 112.133773803711 83.8349075317383 SLI1 42493 // response to drug // inferred from direct assay 5635 // nuclear membrane // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 8080 // N-acetyltransferase activity // inferred from direct assay /// 8080 // N-acetyltransferase activity // inferred from mutant phenotype 80.1025314331055 87.4446716308594 136.822875976563 87.5672836303711 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR212W /GEN=ZPR1 /DB_XREF=GI:6321651 /SEG=NC_001139:+917043,918449 /DEF=Hypothetical ORF /NOTE=Ygr212wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003444 // SLI1 SGDID:S0003444, Chr VII from 917045-918451, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019506 // cdna:Genscan chromosome:SGD1:VII:917045:918451:1 // ensembl // 11 // --- /// YGR212W // cdna:known chromosome:SGD1:VII:917045:918451:1 gene:YGR212W // ensembl // 11 // --- --- No cerevisiae_gene 1.71265007930605 1.09165927800778 1.63587965139055 1.70809677957338 1.09318996620599 Max fold change below threshold 4 1.71265007930605 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776720_at SPCC1672.12c.S1 --- 1.71263947465332 --- --- --- --- 0.299302965402603 0.463299721479416 0.487144440412521 0.27232900261879 0.989257991313934 0.985840022563934 0.991943001747131 0.995850026607513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1672.12c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC1672.12c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.62796256594557 1.54792893834585 -1.71263947465332 1.627596438135 -1.09904917406675 Max fold change below threshold 0 1.71263947465332 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777311_at YIL130W.S1 Proposed transcriptional activator, member of the Gal4p family of zinc cluster proteins 1.71183342123869 500.324279785156 723.700653076172 --- --- 5634 // nucleus // inferred from direct assay --- 660.847106933594 614.602172851563 386.04638671875 786.55419921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL130W /GEN=FKH1 /DB_XREF=GI:6322061 /SEG=NC_001141:+102782,105676 /DEF=Hypothetical ORF /NOTE=Yil130wp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001392 // YIL130W SGDID:S0001392, Chr IX from 102782-105676, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000019141 // cdna:GeneFinder chromosome:SGD1:IX:102782:105676:1 // ensembl // 11 // --- /// YIL130W // cdna:known chromosome:SGD1:IX:102782:105676:1 gene:YIL130W // ensembl // 11 // --- --- No cerevisiae_gene -1.23995539178035 -1.07524368790867 1.1331747037286 -1.71183342123869 1.19022114338739 Max fold change below threshold 4 1.71183342123869 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775417_at YLR192C.S1 Dual function protein involved in translation initiation as a substoichiometric component of eukaryotic translation initiation factor 3 (eIF3) and required for processing of 20S pre-rRNA; binds to eIF3 subunits Rpg1p and Prt1p and 18S rRNA 1.71153761824996 1005.74435424805 1499.72210693359 HCR1 6412 // protein biosynthesis // inferred from physical interaction /// 6412 // protein biosynthesis // inferred from sequence similarity /// 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype 5852 // eukaryotic translation initiation factor 3 complex // inferred from physical interaction 3743 // translation initiation factor activity // inferred from physical interaction /// 3743 // translation initiation factor activity // inferred from sequence similarity /// 19843 // rRNA binding // inferred from direct assay 1493.66955566406 872.706237792969 1138.78247070313 1505.77465820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR192C /GEN=HCR1 /DB_XREF=GI:6323221 /SEG=NC_001144:-538794,539591 /DEF=Dual function protein involved in translation initiation as a substoichiometric component of eukaryotic translation initiation factor 3 (eIF3) and required for processing of 20S pre-rRNA; binds to eIF3 subunits Rpg1p and Prt1p and 18S rRNA /NOTE=Hcr1p; go_component: eukaryotic translation initiation factor 3 complex [goid GO:0005852] [evidence IPI] [pmid 11179233]; go_function: rRNA binding [goid GO:0019843] [evidence IDA] [pmid 11560931]; go_function: translation initiation factor activity [goid GO:0003743] [evidence IPI,ISS] [pmid 11179233]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP] [pmid 11560931]; go_process: protein biosynthesis [goid GO:0006412] [evidence IPI,ISS] [pmid 11179233] --- --- --- --- --- --- S0004182 // HCR1 SGDID:S0004182, Chr XII from 539591-538794, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017970 // cdna:Genscan chromosome:SGD1:XII:538794:539324:-1 // ensembl // 9 // --- /// GENEFINDER00000024661 // cdna:GeneFinder chromosome:SGD1:XII:538794:539591:-1 // ensembl // 10 // --- /// YLR192C // cdna:known chromosome:SGD1:XII:538794:539591:-1 gene:YLR192C // ensembl // 10 // --- --- No cerevisiae_gene 1.26452678176886 -1.71153761824996 -1.08740527970237 -1.31163729166099 1.00810427078276 Max fold change below threshold 4 1.71153761824996 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771894_at YJL131C.S1 Hypothetical protein 1.71140101165733 239.035766601563 212.626960754395 --- --- 5739 // mitochondrion // inferred from direct assay --- 188.135818481445 210.711822509766 267.359710693359 237.118103027344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL131C /GEN=MRS3 /DB_XREF=GI:6322330 /SEG=NC_001142:-164196,165266 /DEF=Hypothetical ORF /NOTE=Yjl131cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003667 // YJL131C SGDID:S0003667, Chr X from 165266-164196, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000024495 // cdna:GeneFinder chromosome:SGD1:X:164127:165266:-1 // ensembl // 11 // --- /// YJL131C // cdna:known chromosome:SGD1:X:164196:165266:-1 gene:YJL131C // ensembl // 11 // --- --- No cerevisiae_gene -1.64117178285423 1.11999843629217 1.71140101165733 1.42109946341625 1.26035597549294 Max fold change below threshold 4 1.71140101165733 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774046_at SPAPB24D3.04c.S1 --- 1.71112701956405 --- --- --- --- 2.75226306915283 2.36694073677063 4.70947170257568 2.53254222869873 0.432372987270355 0.5341796875 0.171387001872063 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPB24D3.04c /GEN=mag1 /DEF=DNA-3-methyladenine glycosylase (PMID 8921872) --- --- --- --- --- --- U76637 // Schizosaccharomyces pombe 3-methyladenine DNA glycosylase (mag1) mRNA, complete cds. // gb // 11 // --- /// SPAPB24D3.04c // |mag1||DNA-3-methyladenine glycosylase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.17211838222122 -1.1627934009484 1.48074884691629 1.71112701956405 -1.08675900364631 Max fold change below threshold 3 1.71112701956405 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779268_at YHR041C.S1 RNA polymerase II holoenzyme/mediator subunit 1.7111118039109 300.838569641113 384.977981567383 SRB2 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from direct assay 340.650512695313 223.616409301758 378.060729980469 429.305450439453 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR041C /GEN=SRB2 /DB_XREF=GI:6321831 /SEG=NC_001140:-189123,189856 /DEF=RNA polymerase II holoenzyme/mediator subunit /NOTE=Srb2p; go_component: mediator complex [goid GO:0000119] [evidence IDA] [pmid 9420330]; go_function: RNA polymerase II transcription mediator activity [goid GO:0016455] [evidence IDA] [pmid 9420330]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IDA] [pmid 9420330] --- --- --- --- --- --- S0001083 // SRB2 SGDID:S0001083, Chr VIII from 189856-189843,189741-189123, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YHR041C // cdna:known chromosome:SGD1:VIII:189123:189856:-1 gene:YHR041C // ensembl // 11 // --- GENSCAN00000016588 // ensembl // 6 // Cross Hyb Matching Probes /// GENEFINDER00000020256 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 1.7111118039109 -1.52336992512756 1.48484219752749 1.10981993536178 1.26025188408695 Max fold change below threshold 4 1.7111118039109 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778281_at YMR200W.S1 Protein that may be involved in cell wall function; mutations in rot1 cause cell wall defects, suppress tor2 mutations, and are synthetically lethal with rot2 mutations 1.71104708222954 753.499664306641 1088.12231445313 ROT1 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay --- 1074.09790039063 627.743041992188 879.256286621094 1102.14672851563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR200W /GEN=ROT1 /DB_XREF=GI:6323856 /SEG=NC_001145:+664751,665521 /DEF=Protein that may be involved in cell wall function; mutations in rot1 cause cell wall defects, suppress tor2 mutations, and are synthetically lethal with rot2 mutations /NOTE=Rot1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9545237] --- --- --- --- --- S0004813 // span:232-254 // numtm:1 S0004813 // ROT1 SGDID:S0004813, Chr XIII from 664751-665521, Verified ORF // sgd // 11 // --- /// GENSCAN00000018882 // cdna:Genscan chromosome:SGD1:XIII:664751:665521:1 // ensembl // 11 // --- /// YMR200W // cdna:known chromosome:SGD1:XIII:664751:665521:1 gene:YMR200W // ensembl // 11 // --- --- No cerevisiae_gene 1.3283318236938 -1.71104708222954 -1.06572993000213 -1.22159820377093 1.02611384689869 Max fold change below threshold 4 1.71104708222954 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770622_at YAR014C.S1 Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern 1.71038302070014 874.833190917969 1406.99499511719 BUD14 903 // cellular morphogenesis during vegetative growth // inferred from genetic interaction 131 // incipient bud site // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay --- 1418.71813964844 829.473937988281 920.192443847656 1395.27185058594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR014C /GEN=BUD14 /DB_XREF=GI:41629669 /SEG=NC_001133:-166745,168868 /DEF=Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern /NOTE=Bud14p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 11452010]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 11452010]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 11452010]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cellular morphogenesis during vegetative growth [goid GO:0000903] [evidence IGI] [pmid 12477789] --- --- --- --- --- --- S0000069 // BUD14 SGDID:S0000069, Chr I from 168866-166743, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018231 // cdna:GeneFinder chromosome:SGD1:I:166743:168866:-1 // ensembl // 11 // --- /// GENSCAN00000020386 // cdna:Genscan chromosome:SGD1:I:166743:168866:-1 // ensembl // 11 // --- /// YAR014C // cdna:known chromosome:SGD1:I:166743:168866:-1 gene:YAR014C // ensembl // 11 // --- --- No cerevisiae_gene -1.32834298223948 -1.71038302070014 1.0801193308736 -1.54176243147169 -1.01680410097334 Max fold change below threshold 4 1.71038302070014 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772620_at YPL084W.S1 Cytoplasmic class E vacuolar protein sorting (VPS) factor that coordinates deubiquitination in the multivesicular body (MVB) pathway by recruiting Doa4p to endosomes 1.71025750096181 787.846435546875 561.26416015625 BRO1 6511 // ubiquitin-dependent protein catabolism // inferred from mutant phenotype /// 7034 // vacuolar transport // inferred from mutant phenotype /// 7034 // vacuolar transport // traceable author statement /// 7165 // signal transduction // inferred from mutant phenotype 5624 // membrane fraction // inferred from direct assay /// 5737 // cytoplasm // traceable author statement /// 5768 // endosome // inferred from direct assay 5478 // intracellular transporter activity // inferred from direct assay /// 5478 // intracellular transporter activity // inferred from mutant phenotype 534.106872558594 671.348022460938 904.344848632813 588.421447753906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL084W /GEN=BRO1 /DB_XREF=GI:6325173 /SEG=NC_001148:+394033,396567 /DEF=BCK1-like resistance to osmotic shock /NOTE=Bro1p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 12668726]; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 12668726]; go_function: intracellular transporter activity [goid GO:0005478] [evidence IDA,IMP] [pmid 12668726]; go_process: signal transduction [goid GO:0007165] [evidence IMP] [pmid 8649366]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence IMP] [pmid 12062418]; go_process: vacuolar transport [goid GO:0007034] [evidence IMP,TAS] [pmid 12668726] --- --- --- --- --- --- S0006005 // BRO1 SGDID:S0006005, Chr XVI from 394035-396569, Verified ORF // sgd // 11 // --- /// GENSCAN00000017125 // cdna:Genscan chromosome:SGD1:XVI:394035:396569:1 // ensembl // 11 // --- /// GENEFINDER00000020866 // cdna:GeneFinder chromosome:SGD1:XVI:394302:396569:1 // ensembl // 11 // --- /// YPL084W // cdna:known chromosome:SGD1:XVI:394035:396569:1 gene:YPL084W // ensembl // 11 // --- --- No cerevisiae_gene -1.71025750096181 1.25695447288462 1.526204268932 1.69319081085893 1.1016923353469 Max fold change below threshold 4 1.71025750096181 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778838_at YKR021W.S1 Hypothetical protein 1.70980417631191 474.359390258789 482.960662841797 --- --- 5737 // cytoplasm // inferred from direct assay --- 445.003356933594 432.739776611328 515.97900390625 520.91796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR021W /GEN=VPS51 /DB_XREF=GI:6322873 /SEG=NC_001143:+478877,481624 /DEF=Hypothetical ORF /NOTE=Ykr021wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001729 // YKR021W SGDID:S0001729, Chr XI from 478877-481624, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018435 // cdna:Genscan chromosome:SGD1:XI:478877:481624:1 // ensembl // 11 // --- /// GENEFINDER00000023138 // cdna:GeneFinder chromosome:SGD1:XI:478925:481624:1 // ensembl // 11 // --- /// YKR021W // cdna:known chromosome:SGD1:XI:478877:481624:1 gene:YKR021W // ensembl // 11 // --- --- No cerevisiae_gene -1.70980417631191 -1.02833938774545 1.24842917952224 1.15949463271857 1.17059334639522 Max fold change below threshold 4 1.70980417631191 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772884_at YPR013C.S1 Hypothetical protein 1.70965636891194 610.067123413086 460.294998168945 --- --- --- --- 438.100769042969 471.132476806641 749.001770019531 482.489227294922 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR013C /GEN=RPA135 /DB_XREF=GI:6325270 /SEG=NC_001148:-584627,585580 /DEF=Hypothetical ORF /NOTE=Ypr013cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006217 // YPR013C SGDID:S0006217, Chr XVI from 585582-584629, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017196 // cdna:Genscan chromosome:SGD1:XVI:584629:585582:-1 // ensembl // 11 // --- /// YPR013C // cdna:known chromosome:SGD1:XVI:584629:585582:-1 gene:YPR013C // ensembl // 11 // --- --- No cerevisiae_gene 1.25149156926391 1.07539751148082 1.24879744513777 1.70965636891194 1.10132020162603 Max fold change below threshold 4 1.70965636891194 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773262_at YMR140W.S1 Protein of unknown function; interacts with both the Reg1p/Glc7p phosphatase and the Snf1p kinase 1.70872517385989 1182.54180908203 1706.82244873047 SIP5 42149 // cellular response to glucose starvation // inferred from mutant phenotype /// 42149 // cellular response to glucose starvation // inferred from physical interaction 5737 // cytoplasm // inferred from physical interaction --- 1634.08984375 956.321044921875 1408.76257324219 1779.55505371094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR140W /GEN=SIP5 /DB_XREF=GI:6323789 /SEG=NC_001145:+547713,549182 /DEF=Sip5 facilitates the interaction between the Reg1Glc7 phosphatase and the Snf1 kinase. /NOTE=Sip5p; go_component: cytoplasm [goid GO:0005737] [evidence IPI] [pmid 10628972]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cellular response to glucose starvation [goid GO:0042149] [evidence IMP,IPI] [pmid 10628972] --- --- --- --- --- --- S0004748 // SIP5 SGDID:S0004748, Chr XIII from 547713-549182, Verified ORF // sgd // 11 // --- /// GENSCAN00000018831 // cdna:Genscan chromosome:SGD1:XIII:547713:549182:1 // ensembl // 11 // --- /// GENEFINDER00000021949 // cdna:GeneFinder chromosome:SGD1:XIII:547713:549182:1 // ensembl // 11 // --- /// YMR140W // cdna:known chromosome:SGD1:XIII:547713:549182:1 gene:YMR140W // ensembl // 11 // --- --- No cerevisiae_gene 1.40317368350597 -1.70872517385989 1.36984972282449 -1.15994694548794 1.08901910168361 Max fold change below threshold 4 1.70872517385989 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779897_at YNR034W-A.S1 Hypothetical protein 1.70825588355914 9660.51318359375 6281.9892578125 --- --- 5737 // cytoplasm // inferred from direct assay --- 7242.54443359375 12372.119140625 6948.9072265625 5321.43408203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR034W-A /GEN=SOL1 /DB_XREF=GI:9755343 /SEG=NC_001146:+692560,692856 /DEF=Hypothetical ORF /NOTE=Ynr034w-ap; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007525 // YNR034W-A SGDID:S0007525, Chr XIV from 692561-692857, Uncharacterized ORF // sgd // 11 // --- /// YNR034W-A // cdna:known chromosome:SGD1:XIV:692561:692857:1 gene:YNR034W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.46934444929293 1.70825588355914 -1.16518504099314 -1.04225660200338 -1.36101365194947 Max fold change below threshold 4 1.70825588355914 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778952_at YDL081C.S1 Ribosomal protein P1 alpha, a component of the ribosomal stalk, which is involved in the interaction between translational elongation factors and the ribosome; accumulation of P1 in the cytoplasm is regulated by phosphorylation and interaction with the P2 stalk component 1.70817790450361 3024.38745117188 4567.81958007813 RPP1A 6412 // protein biosynthesis // traceable author statement /// 6414 // translational elongation // inferred from sequence similarity 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 4906.43701171875 3176.45288085938 2872.32202148438 4229.2021484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL081C /GEN=RPP1A /DB_XREF=GI:6320122 /SEG=NC_001136:-309802,310122 /DEF=Homology to rat P1, human P1, and E.coli L12eIIA /NOTE=Rpp1ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9559554]; go_process: translational elongation [goid GO:0006414] [evidence ISS] [pmid 9175862] --- --- --- --- --- --- S0002239 // RPP1A SGDID:S0002239, Chr IV from 310122-309802, reverse complement, Verified ORF // sgd // 11 // --- /// X06957 // Yeast mRNA for acidic ribosomal protein A1. // gb // 10 // --- /// GENEFINDER00000023490 // cdna:GeneFinder chromosome:SGD1:IV:309802:310122:-1 // ensembl // 11 // --- /// YDL081C // cdna:known chromosome:SGD1:IV:309802:310122:-1 gene:YDL081C // ensembl // 11 // --- GENSCAN00000025040 // ensembl // 10 // Negative Strand Matching Probes No cerevisiae_gene -1.01547088949555 -1.54462766984012 -1.44887889554303 -1.70817790450361 -1.16013300842842 Max fold change below threshold 4 1.70817790450361 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
RPTR-Sc-U46493-1_s_at AFFX-Sc-U46493-1 --- 1.7080233493323 --- --- --- --- 724.674011230469 1096.33410644531 995.753723144531 715.935119628906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL U46493 /FEA=CDS /DB_XREF=AAC53669.1 GI:1245115 /PROD=Flp recombinase --- --- --- --- --- --- AFFX-Sc-U46493-1 // --- // affx // --- // --- --- No No 1.7080233493323 1.51286521864332 1.24973547255177 1.37407124819307 -1.01220626193906 Max fold change below threshold 4 1.7080233493323 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771751_at YBR175W.S1 Essential subunit of the COMPASS (Set1C) complex, which methylates Rad6p ubiquitinated histone H3 on lysine 4 and is required in transcriptional silencing near telomeres; WD40 beta propeller superfamily member and ortholog of mammalian WDR5 1.7080035967549 362.636291503906 577.76953125 SWD3 723 // telomere maintenance // inferred from mutant phenotype /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 16571 // histone methylation // inferred from direct assay /// 16571 // histone methylation // inferred from mutant phenotype 48188 // COMPASS complex // inferred from physical interaction 42800 // histone lysine N-methyltransferase activity (H3-K4 specific) // inferred from mutant phenotype /// 42800 // histone lysine N-methyltransferase activity (H3-K4 specific) // inferred from direct assay 561.361694335938 328.665405273438 396.607177734375 594.177368164063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR175W /GEN=SWD3 /DB_XREF=GI:6319651 /SEG=NC_001134:+582365,583312 /DEF=Subunit of the COMPASS complex, which methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres /NOTE=Swd3p; go_component: COMPASS complex [goid GO:0048188] [evidence IPI] [pmid 11805083]; go_component: nuclear chromatin [goid GO:0000790] [evidence IMP] [pmid 11687631]; go_function: chromatin binding [goid GO:0003682] [evidence IMP] [pmid 11687631]; go_function: histone lysine N-methyltransferase activity (H3-K4 specific) [goid GO:0042800] [evidence IDA] [pmid 11742990]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 11687631]; go_process: histone methylation [goid GO:0016571] [evidence IDA] [pmid 11742990] --- --- --- --- --- --- S0000379 // SWD3 SGDID:S0000379, Chr II from 582403-583350, Verified ORF // sgd // 11 // --- /// GENSCAN00000021281 // cdna:Genscan chromosome:SGD1:II:582403:583350:1 // ensembl // 11 // --- /// YBR175W // cdna:known chromosome:SGD1:II:582403:583350:1 gene:YBR175W // ensembl // 11 // --- --- No cerevisiae_gene 1.0424772352906 -1.7080035967549 -1.10071295887898 -1.41540982072671 1.05845727301886 Max fold change below threshold 4 1.7080035967549 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778644_at YMR017W.S1 Meiosis-specific subunit of the t-SNARE complex, required for prospore membrane formation during sporulation; similar to but not functionally redundant with Sec9p; SNAP-25 homolog 1.70725109622111 35.1830520629883 19.7893018722534 SPO20 6906 // vesicle fusion // traceable author statement /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 5628 // prospore membrane // inferred from mutant phenotype /// 5628 // prospore membrane // inferred from sequence similarity 5486 // t-SNARE activity // inferred from physical interaction /// 5486 // t-SNARE activity // inferred from sequence similarity 21.7948055267334 37.2092056274414 33.1568984985352 17.7837982177734 0.00585938012227416 0.000244141003349796 0.00122069998178631 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR017W /GEN=SPO20 /DB_XREF=GI:6323659 /SEG=NC_001145:+307488,308681 /DEF=Meiosis-specific subunit of the t-SNARE complex, required for prospore membrane formation during sporulation; similar to but not functionally redundant with Sec9p; SNAP-25 homolog /NOTE=Spo20p; go_component: prospore membrane [goid GO:0005628] [evidence IMP,ISS] [pmid 9425151]; go_function: t-SNARE activity [goid GO:0005486] [evidence IPI] [pmid 10924463]; go_function: t-SNARE activity [goid GO:0005486] [evidence ISS] [pmid 9425151]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence IMP] [pmid 9425151]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 10047442] --- --- --- --- --- --- S0004619 // SPO20 SGDID:S0004619, Chr XIII from 307488-308681, Verified ORF // sgd // 10 // --- /// GENSCAN00000018731 // cdna:Genscan chromosome:SGD1:XIII:307638:308681:1 // ensembl // 10 // --- /// GENEFINDER00000021908 // cdna:GeneFinder chromosome:SGD1:XIII:307638:308681:1 // ensembl // 10 // --- /// YMR017W // cdna:known chromosome:SGD1:XIII:307488:308681:1 gene:YMR017W // ensembl // 10 // --- --- No cerevisiae_gene 1.37086810734981 1.70725109622111 -1.03241390177338 1.52132114497948 -1.22554278112261 Max fold change below threshold 4 1.70725109622111 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1770897_x_at YFL020C.S1 Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Part of 23-member seripauperin multigene family, active during alcoholic fermentation, regulated by anaerobiosis, inhibited by oxygen, repressed by heme /// Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 1.70700570933608 408.656692504883 491.301452636719 PAU5 /// PAU7 --- --- --- 446.369750976563 350.27685546875 467.036529541016 536.233154296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL020C /GEN=PAU5 /DB_XREF=GI:14318499 /SEG=NC_001138:-99225,99593 /DEF=Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /NOTE=Pau5p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000073 // span:7-26 // numtm:1 S0001874 // PAU5 SGDID:S0001874, Chr VI from 99593-99225, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018568 // cdna:GeneFinder chromosome:SGD1:VI:99225:99593:-1 // ensembl // 11 // --- /// GENSCAN00000023226 // cdna:Genscan chromosome:SGD1:VI:99225:99593:-1 // ensembl // 11 // --- /// YFL020C // cdna:known chromosome:SGD1:VI:99225:99593:-1 gene:YFL020C // ensembl // 11 // --- --- No cerevisiae_gene -1.70700570933608 -1.27433412744104 1.44569485659185 1.0462996843295 1.20132054899265 Max fold change below threshold 4 1.70700570933608 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778937_at YLR310C.S1 Membrane bound guanine nucleotide exchange factor (GEF or GDP-release factor); indirectly regulates adenylate cyclase through activation of Ras1p and Ras2p by stimulating the exchange of GDP for GTP; required for progression through G1 1.70639026914257 587.491424560547 998.096710205078 CDC25 74 // regulation of cell cycle // inferred from mutant phenotype /// 1302 // replicative cell aging // inferred from mutant phenotype /// 7089 // traversing start control point of mitotic cell cycle // inferred from mutant phenotype /// 7265 // Ras protein signal transduction // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 5088 // Ras guanyl-nucleotide exchange factor activity // traceable author statement 993.747680664063 592.614501953125 582.368347167969 1002.44573974609 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR310C /GEN=CDC25 /DB_XREF=GI:6323341 /SEG=NC_001144:-752226,756995 /DEF=Membrane bound guanine nucleotide exchange factor (GEF or GDP-release factor); indirectly regulates adenylate cyclase through activation of Ras1p and Ras2p by stimulating the exchange of GDP for GTP; required for progression through G1 /NOTE=Cdc25p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 1334534]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 8893498]; go_function: Ras guanyl-nucleotide exchange factor activity [goid GO:0005088] [evidence TAS] [pmid 1334534]; go_process: RAS protein signal transduction [goid GO:0007265] [evidence TAS] [pmid 1334534]; go_process: regulation of cell cycle [goid GO:0000074] [evidence IMP] [pmid 3021894]; go_process: traversing start control point of mitotic cell cycle [goid GO:0007089] [evidence IMP] [pmid 3021894] --- --- --- --- --- --- S0004301 // CDC25 SGDID:S0004301, Chr XII from 756995-752226, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018060 // cdna:Genscan chromosome:SGD1:XII:752226:756995:-1 // ensembl // 11 // --- /// GENEFINDER00000024648 // cdna:GeneFinder chromosome:SGD1:XII:752226:754736:-1 // ensembl // 11 // --- /// YLR310C // cdna:known chromosome:SGD1:XII:752226:756995:-1 gene:YLR310C // ensembl // 11 // --- --- No cerevisiae_gene -1.52962308178959 -1.67688721316959 1.05040425482518 -1.70639026914257 1.00875278428446 Max fold change below threshold 4 1.70639026914257 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771433_at YPL151C.S1 Splicing factor that is found in the Cef1p subcomplex of the spliceosome 1.70636860704295 1299.12957763672 882.163482666016 PRP46 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 5681 // spliceosome complex // inferred from direct assay --- 858.940979003906 1132.58923339844 1465.669921875 905.385986328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL151C /GEN=PRP46 /DB_XREF=GI:6325106 /SEG=NC_001148:-266179,267534 /DEF=Splicing factor that is found in the Cef1p subcomplex of the spliceosome /NOTE=Prp46p; go_component: spliceosome complex [goid GO:0005681] [evidence IDA] [pmid 12088152]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 12088152] --- --- --- --- --- --- S0006072 // PRP46 SGDID:S0006072, Chr XVI from 267534-266179, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017073 // cdna:Genscan chromosome:SGD1:XVI:266179:267534:-1 // ensembl // 11 // --- /// GENEFINDER00000020926 // cdna:GeneFinder chromosome:SGD1:XVI:266179:267534:-1 // ensembl // 11 // --- /// YPL151C // cdna:known chromosome:SGD1:XVI:266179:267534:-1 gene:YPL151C // ensembl // 11 // --- --- No cerevisiae_gene -1.15213302660848 1.31858796015516 1.08960192892874 1.70636860704295 1.05407240830223 Max fold change below threshold 4 1.70636860704295 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779087_at YPL049C.S1 Regulatory protein of unknown function, constitutively-expressed, involved in the regulation of mating-specific genes and the invasive growth pathway, required for MAP-kinase imposed repression, inhibits pheromone-responsive transcription 1.70635088178614 334.886184692383 289.069244384766 DIG1 1403 // invasive growth (sensu Saccharomyces) // inferred from genetic interaction 5634 // nucleus // traceable author statement /// 5634 // nucleus // inferred from curator 3677 // DNA binding // inferred from physical interaction /// 8134 // transcription factor binding // inferred from direct assay 276.256256103516 240.141174316406 429.631195068359 301.882232666016 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL049C /GEN=DIG1 /DB_XREF=GI:6325208 /SEG=NC_001148:-462476,463834 /DEF=Regulatory protein of unknown function, constitutively-expressed, involved in the regulation of mating-specific genes and the invasive growth pathway, required for MAP-kinase imposed repression, inhibits pheromone-responsive transcription /NOTE=Dig1p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 9860980]; go_function: transcription factor binding [goid GO:0008134] [evidence IDA] [pmid 10825185]; go_process: invasive growth (sensu Saccharomyces) [goid GO:0001403] [evidence IGI] [pmid 8918885] --- --- --- --- --- --- S0005970 // DIG1 SGDID:S0005970, Chr XVI from 463836-462478, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017152 // cdna:Genscan chromosome:SGD1:XVI:462478:463836:-1 // ensembl // 10 // --- /// GENEFINDER00000020815 // cdna:GeneFinder chromosome:SGD1:XVI:462478:463836:-1 // ensembl // 10 // --- /// YPL049C // cdna:known chromosome:SGD1:XVI:462478:463836:-1 gene:YPL049C // ensembl // 10 // --- --- No cerevisiae_gene 1.70635088178614 -1.15039104347647 1.61000821332326 1.55519082582287 1.09276161533478 Max fold change below threshold 4 1.70635088178614 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773900_at YJR016C.S1 Dihydroxyacid dehydratase, catalyzes third step in the common pathway leading to biosynthesis of branched-chain amino acids 1.70608663064622 3298.41833496094 4843.47998046875 ILV3 9082 // branched chain family amino acid biosynthesis // traceable author statement 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 4160 // dihydroxy-acid dehydratase activity // traceable author statement 5390.552734375 3159.60083007813 3437.23583984375 4296.4072265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR016C /GEN=ILV3 /DB_XREF=GI:6322476 /SEG=NC_001142:-464365,466122 /DEF=Dihydroxyacid dehydratase, catalyzes third step in the common pathway leading to biosynthesis of branched-chain amino acids /NOTE=Ilv3p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 12626680]; go_function: dihydroxy-acid dehydratase activity [goid GO:0004160] [evidence TAS] [pmid 8299945]; go_process: branched chain family amino acid biosynthesis [goid GO:0009082] [evidence TAS] [pmid 8299945] --- --- --- --- --- --- S0003777 // ILV3 SGDID:S0003777, Chr X from 466122-464365, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024147 // cdna:Genscan chromosome:SGD1:X:464365:466122:-1 // ensembl // 11 // --- /// GENEFINDER00000024269 // cdna:GeneFinder chromosome:SGD1:X:464365:466122:-1 // ensembl // 11 // --- /// YJR016C // cdna:known chromosome:SGD1:X:464365:466122:-1 gene:YJR016C // ensembl // 11 // --- --- No cerevisiae_gene -1.16577894507418 -1.70608663064622 -1.61523266758227 -1.568281312527 -1.25466522378232 Max fold change below threshold 4 1.70608663064622 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779049_at YOR232W.S1 Protein of the mitochondrial matrix involved in protein import into mitochondria; acts as a cochaperone and a nucleotide release factor for Ssc1p; homolog of E. coli GrpE 1.70607635375582 811.492584228516 1273.60803222656 MGE1 30150 // mitochondrial matrix protein import // inferred from mutant phenotype 1405 // presequence translocase-associated import motor // inferred from physical interaction /// 5739 // mitochondrion // inferred from direct assay /// 5759 // mitochondrial matrix // inferred from direct assay 51082 // unfolded protein binding // inferred from direct assay 1301.84851074219 859.919372558594 763.065795898438 1245.36755371094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR232W /GEN=MGE1 /DB_XREF=GI:6324806 /SEG=NC_001147:+774573,775259 /DEF=involved in protein import into mitochondria /NOTE=Mge1p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 8022808]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11914276]; go_component: presequence translocase-associated import motor [goid GO:0001405] [evidence IPI] [pmid 14638855]; go_function: chaperone activity [goid GO:0003754] [evidence IDA] [pmid 8798629]; go_process: mitochondrial matrix protein import [goid GO:0030150] [evidence IMP] [pmid 8022808] --- --- --- --- --- --- S0005758 // MGE1 SGDID:S0005758, Chr XV from 774573-775259, Verified ORF // sgd // 11 // --- /// GENSCAN00000017655 // cdna:Genscan chromosome:SGD1:XV:774573:775259:1 // ensembl // 11 // --- /// GENEFINDER00000022812 // cdna:GeneFinder chromosome:SGD1:XV:774573:775259:1 // ensembl // 11 // --- /// YOR232W // cdna:known chromosome:SGD1:XV:774573:775259:1 gene:YOR232W // ensembl // 11 // --- --- No cerevisiae_gene -1.17821074030427 -1.51391927230187 -1.05235724328846 -1.70607635375582 -1.04535284130613 Max fold change below threshold 4 1.70607635375582 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779810_at YBR044C.S1 Protein involved in the assembly of the mitochondrial succinate dehydrogenase complex; putative chaperone 1.70601537280774 616.839202880859 1063.06246948242 TCM62 6461 // protein complex assembly // inferred from physical interaction /// 6461 // protein complex assembly // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay 51082 // unfolded protein binding // inferred from mutant phenotype 1019.70196533203 597.709716796875 635.968688964844 1106.42297363281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR044C /GEN=TCM62 /DB_XREF=GI:6319518 /SEG=NC_001134:-324299,326020 /DEF=mitochondrial protein; (putative) chaperone /NOTE=Tcm62p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 9822678]; go_function: chaperone activity [goid GO:0003754] [evidence IMP] [pmid 9822678]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP,IPI] [pmid 9822678] --- --- --- --- --- --- S0000248 // TCM62 SGDID:S0000248, Chr II from 326058-324337, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021175 // cdna:Genscan chromosome:SGD1:II:324337:326058:-1 // ensembl // 11 // --- /// GENEFINDER00000022331 // cdna:GeneFinder chromosome:SGD1:II:324337:325833:-1 // ensembl // 11 // --- /// YBR044C // cdna:known chromosome:SGD1:II:324337:326058:-1 gene:YBR044C // ensembl // 11 // --- --- No cerevisiae_gene -1.45011364439244 -1.70601537280774 -1.07479332316662 -1.603383913431 1.08504544587451 Max fold change below threshold 4 1.70601537280774 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778560_s_at YGR085C.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl11Bp; involved in ribosomal assembly; depletion causes degradation of proteins and RNA of the 60S subunit; has similarity to E. coli L5 and rat L11 /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl11Ap; involved in ribosomal assembly; depletion causes degradation of proteins and RNA of the 60S subunit; has similarity to E. coli L5 and rat L11 1.70558500425242 3645.66845703125 5001.67065429688 RPL11A /// RPL11B 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 5650.552734375 3978.36645507813 3312.97045898438 4352.78857421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR085C /GEN=RPL11B /DB_XREF=GI:6321522 /SEG=NC_001139:-648385,648909 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl11Ap; involved in ribosomal assembly; depletion causes degradation of proteins and RNA of the 60S subunit; has similarity to E. coli L5 and rat L11 /NOTE=Rpl11bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 2277060] --- --- --- --- --- --- S0003317 // RPL11B SGDID:S0003317, Chr VII from 648911-648387, reverse complement, Verified ORF // sgd // 11 // --- /// S0006306 // RPL11A SGDID:S0006306, Chr XVI from 731746-731222, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019404 // cdna:Genscan chromosome:SGD1:VII:648387:648911:-1 // ensembl // 11 // --- /// GENEFINDER00000021616 // cdna:GeneFinder chromosome:SGD1:VII:648387:648911:-1 // ensembl // 11 // --- /// GENSCAN00000017259 // cdna:Genscan chromosome:SGD1:XVI:731222:731746:-1 // ensembl // 11 // --- /// GENEFINDER00000020716 // cdna:GeneFinder chromosome:SGD1:XVI:731222:731746:-1 // ensembl // 11 // --- /// YGR085C // cdna:known chromosome:SGD1:VII:648387:648911:-1 gene:YGR085C // ensembl // 11 // --- /// YPR102C // cdna:known chromosome:SGD1:XVI:731222:731746:-1 gene:YPR102C // ensembl // 11 // --- --- No cerevisiae_gene -1.06778230045676 -1.42031982176062 -1.47186755708792 -1.70558500425242 -1.2981454619328 Max fold change below threshold 4 1.70558500425242 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771070_at YIR007W.S1 Hypothetical protein 1.70532996843096 534.983825683594 919.393615722656 --- --- 5737 // cytoplasm // inferred from direct assay --- 890.5693359375 522.226989746094 547.740661621094 948.217895507813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR007W /GEN=PAN1 /DB_XREF=GI:6322197 /SEG=NC_001141:+370701,372995 /DEF=Hypothetical ORF /NOTE=Yir007wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001446 // YIR007W SGDID:S0001446, Chr IX from 370701-372995, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016482 // cdna:Genscan chromosome:SGD1:IX:370701:372995:1 // ensembl // 11 // --- /// GENEFINDER00000019097 // cdna:GeneFinder chromosome:SGD1:IX:370701:372995:1 // ensembl // 11 // --- /// YIR007W // cdna:known chromosome:SGD1:IX:370701:372995:1 gene:YIR007W // ensembl // 11 // --- --- No cerevisiae_gene -1.29295583019785 -1.70532996843096 -1.28136321962632 -1.62589597292589 1.06473225300265 Max fold change below threshold 4 1.70532996843096 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775839_at YGR016W.S1 Hypothetical protein 1.70528604587823 129.334701538086 106.898326873779 --- --- --- --- 97.453483581543 105.177352905273 153.492050170898 116.343170166016 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR016W /GEN=MSB2 /DB_XREF=GI:6321453 /SEG=NC_001139:+522263,522835 /DEF=Hypothetical ORF /NOTE=Ygr016wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003248 // span:56-75,79-101,122-144,149-166 // numtm:4 S0003248 // YGR016W SGDID:S0003248, Chr VII from 522265-522837, Uncharacterized ORF // sgd // 10 // --- /// YGR016W // cdna:known chromosome:SGD1:VII:522265:522837:1 gene:YGR016W // ensembl // 10 // --- --- No cerevisiae_gene 1.56484428645321 1.07925698538285 1.70528604587823 1.57502887049149 1.19383285122555 Max fold change below threshold 4 1.70528604587823 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773602_at YOR046C.S1 Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family involved in mRNA export from the nucleus 1.70523844716949 1272.29730224609 2047.22833251953 DBP5 6406 // mRNA-nucleus export // inferred from genetic interaction /// 6406 // mRNA-nucleus export // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5643 // nuclear pore // inferred from physical interaction /// 5737 // cytoplasm // inferred from direct assay 3724 // RNA helicase activity // inferred from direct assay /// 3724 // RNA helicase activity // inferred from sequence similarity 2083.96728515625 1222.09729003906 1322.49731445313 2010.48937988281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR046C /GEN=DBP5 /DB_XREF=GI:6324620 /SEG=NC_001147:-414459,415907 /DEF=Cytoplasmic DExD/H-box protein essential for poly(A)+ RNA export /NOTE=Dbp5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9564048]; go_component: nuclear pore [goid GO:0005643] [evidence IPI] [pmid 10428971]; go_function: RNA helicase activity [goid GO:0003724] [evidence IDA,ISS] [pmid 9564047]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IGI,IMP] [pmid 9564048] --- --- --- --- --- --- S0005572 // DBP5 SGDID:S0005572, Chr XV from 415907-414459, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017498 // cdna:Genscan chromosome:SGD1:XV:414459:415508:-1 // ensembl // 11 // --- /// GENEFINDER00000022776 // cdna:GeneFinder chromosome:SGD1:XV:414459:415907:-1 // ensembl // 11 // --- /// YOR046C // cdna:known chromosome:SGD1:XV:414459:415907:-1 gene:YOR046C // ensembl // 11 // --- --- No cerevisiae_gene 1.06123644406643 -1.70523844716949 -1.13884428104629 -1.57578186540062 -1.03654727351891 Max fold change below threshold 4 1.70523844716949 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779860_at YLR411W.S1 High-affinity copper transporter of the plasma membrane, acts as a trimer; gene is disrupted by a Ty2 transposon insertion in many laboratory strains of S. cerevisiae 1.70504112710412 3535.36608886719 3517.08923339844 CTR3 15677 // copper ion import // inferred from direct assay 5887 // integral to plasma membrane // inferred from direct assay 15088 // copper uptake transporter activity // inferred from direct assay 3751.65161132813 3508.13720703125 3562.59497070313 3282.52685546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR411W /GEN=CTR3 /DB_XREF=GI:6323443 /SEG=NC_001144:+947250,947975 /DEF=High-affinity copper transporter of the plasma membrane, acts as a trimer; gene is disrupted by a Ty2 transposon insertion in many laboratory strains of S. cerevisiae /NOTE=Ctr3p; go_component: integral to plasma membrane [goid GO:0005887] [evidence IDA] [pmid 10924521]; go_function: copper uptake transporter activity [goid GO:0015088] [evidence IDA] [pmid 10924521]; go_process: copper ion import [goid GO:0015677] [evidence IDA] [pmid 10924521] --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 1.10000002384186 S0004403 // span:44-61,169-191,193-210 // numtm:3 S0004403 // CTR3 SGDID:S0004403, Chr XII from 947250-947975, Verified ORF // sgd // 11 // --- /// GENSCAN00000018130 // cdna:Genscan chromosome:SGD1:XII:947250:947975:1 // ensembl // 11 // --- /// YLR411W // cdna:known chromosome:SGD1:XII:947250:947975:1 gene:YLR411W // ensembl // 11 // --- --- No cerevisiae_gene -1.70504112710412 -1.06941416196858 1.10107820351258 -1.05306711601507 -1.14291574037781 Max fold change below threshold 4 1.70504112710412 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779030_at YDL174C.S1 D-lactate dehydrogenase, oxidizes D-lactate to pyruvate, transcription is heme-dependent, repressed by glucose, and derepressed in ethanol or lactate; located in the mitochondrial inner membrane 1.70502923453575 6962.517578125 4571.43896484375 DLD1 5975 // carbohydrate metabolism // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay 4458 // D-lactate dehydrogenase (cytochrome) activity // inferred from sequence similarity /// 4458 // D-lactate dehydrogenase (cytochrome) activity // inferred from mutant phenotype 4869.77880859375 8303.115234375 5621.919921875 4273.09912109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL174C /GEN=DLD1 /DB_XREF=GI:6320027 /SEG=NC_001136:-145827,147590 /DEF=D-lactate dehydrogenase, oxidizes D-lactate to pyruvate, transcription is heme-dependent, repressed by glucose, and derepressed in ethanol or lactate; located in the mitochondrial inner membrane /NOTE=Dld1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 9525904]; go_function: D-lactate dehydrogenase (cytochrome) activity [goid GO:0004458] [evidence IMP,ISS] [pmid 8492799]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 8492799]; go_process: carbohydrate metabolism [goid GO:0005975] [evidence IMP] [pmid 8492799] --- --- --- --- --- --- S0002333 // DLD1 SGDID:S0002333, Chr IV from 147590-145827, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023416 // cdna:GeneFinder chromosome:SGD1:IV:145827:147590:-1 // ensembl // 11 // --- /// GENSCAN00000024972 // cdna:Genscan chromosome:SGD1:IV:145827:147590:-1 // ensembl // 11 // --- /// YDL174C // cdna:known chromosome:SGD1:IV:145827:147590:-1 gene:YDL174C // ensembl // 11 // --- --- No cerevisiae_gene -1.1654376175276 1.70502923453575 -1.03393553325815 1.15445077545492 -1.13963628518574 Max fold change below threshold 4 1.70502923453575 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769874_at YPR155C.S1 Protein involved in regulation of mitochondrial expression of subunits 6 (Atp6p) and 8 (Atp8p) of the Fo-F1 ATP synthase; functions with Nca3p 1.70402161734629 1287.16339111328 1708.77239990234 NCA2 9060 // aerobic respiration // inferred from mutant phenotype /// 16071 // mRNA metabolism // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay --- 1774.67590332031 1348.33947753906 1225.9873046875 1642.86889648438 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR155C /GEN=NCA2 /DB_XREF=GI:6325413 /SEG=NC_001148:-835557,837407 /DEF=Regulates proper expression of subunits 6 (Atp6p) and 8 (Atp8p) of the Fo-F1 ATP synthase /NOTE=Nca2p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 7723016]; go_process: mRNA metabolism [goid GO:0016071] [evidence IMP] [pmid 7723016] --- --- --- --- --- S0006359 // span:487-509 // numtm:1 S0006359 // NCA2 SGDID:S0006359, Chr XVI from 837409-835559, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017298 // cdna:Genscan chromosome:SGD1:XVI:835559:837409:-1 // ensembl // 11 // --- /// YPR155C // cdna:known chromosome:SGD1:XVI:835559:837409:-1 gene:YPR155C // ensembl // 11 // --- --- No cerevisiae_gene -1.70402161734629 -1.3161936833292 1.11284954167124 -1.44754835269087 -1.08022977799263 Max fold change below threshold 4 1.70402161734629 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780126_at YJL053W.S1 Vacuolar protein sorting protein that forms part of the multimeric membrane-associated retromer complex along with Vps35p, Vps29p, Vps17p, and Vps5p; essential for endosome-to-Golgi retrograde protein transport 1.70399573504098 953.139251708984 609.397064208984 PEP8 42147 // retrograde transport, endosome to Golgi // inferred from physical interaction /// 45053 // protein-Golgi retention // inferred from mutant phenotype 5768 // endosome // inferred from physical interaction /// 30904 // retromer complex // traceable author statement --- 588.805297851563 902.956787109375 1003.32171630859 629.988830566406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL053W /GEN=PEP8 /DB_XREF=GI:6322408 /SEG=NC_001142:+335814,336953 /DEF=Plays a role in delivery of proteins to the vacuole /NOTE=Pep8p; go_component: endosome [goid GO:0005768] [evidence IPI] [pmid 9700157]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-Golgi retention [goid GO:0045053] [evidence IMP] [pmid 8649377]; go_process: retrograde transport, endosome to Golgi [goid GO:0042147] [evidence IPI] [pmid 9700157] --- --- --- --- --- --- S0003589 // PEP8 SGDID:S0003589, Chr X from 335814-336953, Verified ORF // sgd // 11 // --- /// GENSCAN00000024100 // cdna:Genscan chromosome:SGD1:X:335814:336953:1 // ensembl // 11 // --- /// GENEFINDER00000024476 // cdna:GeneFinder chromosome:SGD1:X:336309:336953:1 // ensembl // 11 // --- /// YJL053W // cdna:known chromosome:SGD1:X:335814:336953:1 gene:YJL053W // ensembl // 11 // --- --- No cerevisiae_gene 1.5944277311069 1.53354052758032 1.10762936734852 1.70399573504098 1.06994422921314 Max fold change below threshold 4 1.70399573504098 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779914_at YHL044W.S1 Putative integral membrane protein, member of DUP240 gene family; green fluorescent protein (GFP)-fusion protein localizes to the plasma membrane in a punctate pattern 1.70380748103183 71.0475997924805 67.6727752685547 --- --- 5886 // plasma membrane // inferred from direct assay /// 5886 // plasma membrane // inferred from sequence similarity --- 64.5824890136719 66.6099243164063 75.4852752685547 70.7630615234375 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL044W /GEN=ARN2 /DB_XREF=GI:6321743 /SEG=NC_001140:+13563,14270 /DEF=Putative integral membrane protein, member of DUP240 gene family; green fluorescent protein (GFP)-fusion protein localizes to the plasma membrane in a punctate pattern /NOTE=Yhl044wp; go_component: plasma membrane [goid GO:0005886] [evidence IDA,ISS] [pmid 12101299]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001036 // span:44-66,73-95 // numtm:2 S0001036 // YHL044W SGDID:S0001036, Chr VIII from 13563-14270, Uncharacterized ORF // sgd // 11 // --- /// YHL044W // cdna:known chromosome:SGD1:VIII:13563:14270:1 gene:YHL044W // ensembl // 11 // --- --- No cerevisiae_gene -1.70380748103183 1.03139295703368 1.40961500567753 1.1688195425942 1.09570043837204 Max fold change below threshold 4 1.70380748103183 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769538_at YNR055C.S1 Putative ion transporter similar to the major facilitator superfamily of transporters; mutations in membrane-spanning domains permit nonselective cation uptake 1.7037580335102 1066.89181518555 898.009002685547 HOL1 6810 // transport // inferred from sequence similarity /// 6810 // transport // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from mutant phenotype 5215 // transporter activity // inferred from sequence similarity /// 5215 // transporter activity // inferred from mutant phenotype 836.739379882813 708.182189941406 1425.60144042969 959.278625488281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR055C /GEN=HOL1 /DB_XREF=GI:6324383 /SEG=NC_001146:-728424,730184 /DEF=Putative ion transporter similar to the major facilitator superfamily of transporters; mutations in membrane-spanning domains permit nonselective cation uptake /NOTE=Hol1p; go_component: plasma membrane [goid GO:0005886] [evidence IMP,ISS] [pmid 8955402]; go_function: transporter activity [goid GO:0005215] [evidence IMP,ISS] [pmid 8955402]; go_process: transport [goid GO:0006810] [evidence IMP,ISS] [pmid 8955402] --- --- --- --- --- S0005338 // span:105-127,131-150,187-209,219-241,359-378,412-434,447-469,479-501,508-530,543-565 // numtm:10 S0005338 // HOL1 SGDID:S0005338, Chr XIV from 730185-728425, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000020082 // cdna:Genscan chromosome:SGD1:XIV:728425:730185:-1 // ensembl // 10 // --- /// GENEFINDER00000020625 // cdna:GeneFinder chromosome:SGD1:XIV:728425:730185:-1 // ensembl // 10 // --- /// YNR055C // cdna:known chromosome:SGD1:XIV:728425:730185:-1 gene:YNR055C // ensembl // 10 // --- --- No cerevisiae_gene 1.38441600048085 -1.18153123838379 1.19436874878639 1.7037580335102 1.14644852214632 Max fold change below threshold 4 1.7037580335102 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779561_at YGR207C.S1 Hypothetical protein 1.70359026717851 769.522857666016 614.355377197266 --- --- 5739 // mitochondrion // inferred from direct assay --- 586.560302734375 624.463928222656 914.581787109375 642.150451660156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR207C /GEN=ADE3 /DB_XREF=GI:6321646 /SEG=NC_001139:-910846,911631 /DEF=Hypothetical ORF /NOTE=Ygr207cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003439 // YGR207C SGDID:S0003439, Chr VII from 911633-910848, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019501 // cdna:Genscan chromosome:SGD1:VII:910848:911633:-1 // ensembl // 11 // --- /// GENEFINDER00000021471 // cdna:GeneFinder chromosome:SGD1:VII:910848:911633:-1 // ensembl // 11 // --- /// YGR207C // cdna:known chromosome:SGD1:VII:910848:911633:-1 gene:YGR207C // ensembl // 11 // --- --- No cerevisiae_gene -1.03524921830109 1.06462016831276 1.70359026717851 1.55922891959421 1.09477311823974 Max fold change below threshold 4 1.70359026717851 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772992_s_at YPL278C.S1 Hypothetical protein /// Hypothetical protein 1.70348696710855 3190.96728515625 1892.23675537109 --- --- --- --- 1911.4423828125 3256.1171875 3125.8173828125 1873.03112792969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL278C /GEN=HSP32 /DB_XREF=GI:6324977 /SEG=NC_001148:-15053,15355 /DEF=Hypothetical ORF /NOTE=Ypl278cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005916 // span:7-24 // numtm:1 S0005916 // YOR389W SGDID:S0005916, Chr XV from 1074209-1076083, Uncharacterized ORF // sgd // 11 // --- /// S0006199 // YPL278C SGDID:S0006199, Chr XVI from 15355-15053, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022902 // cdna:GeneFinder chromosome:SGD1:XV:1074209:1076083:1 // ensembl // 11 // --- /// GENSCAN00000017834 // cdna:Genscan chromosome:SGD1:XV:1074734:1076083:1 // ensembl // 11 // --- /// YOR389W // cdna:known chromosome:SGD1:XV:1074209:1076083:1 gene:YOR389W // ensembl // 11 // --- /// YPL278C // cdna:known chromosome:SGD1:XVI:15053:15355:-1 gene:YPL278C // ensembl // 11 // --- --- No cerevisiae_gene -1.07005402091256 1.70348696710855 1.02553310220061 1.63531865303372 -1.02050753685299 Max fold change below threshold 4 1.70348696710855 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779510_at YHR175W-A.S1 Identified by fungal homology and RT-PCR 1.70335591219766 316.104721069336 461.446731567383 --- --- --- --- 451.940277099609 265.323455810547 366.885986328125 470.953186035156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR175W-A /GEN=CTR2 /DB_XREF=GI:33438808 /SEG=NC_001140:+453556,453705 /DEF=Identified by fungal homology and RT-PCR /NOTE=Yhr175w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028553 // span:17-39 // numtm:1 S0028553 // YHR175W-A SGDID:S0028553, Chr VIII from 453557-453706, Uncharacterized ORF // sgd // 11 // --- /// YHR175W-A // cdna:known chromosome:SGD1:VIII:453557:453706:1 gene:YHR175W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.2249797052375 -1.70335591219766 -1.09569304392412 -1.23182758115873 1.04206951648029 Max fold change below threshold 4 1.70335591219766 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777976_at SPBC14C8.03.S1 --- 1.7032986150239 --- --- --- --- 11.0274085998535 8.37244892120361 8.97632694244385 8.23890399932861 0.111571997404099 0.0952147990465164 0.219482004642487 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14C8.03 /DEF=methionine metallopeptidase (predicted) --- --- --- --- --- --- SPBC14C8.03 // |||methionine metallopeptidase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.40866148739568 -1.31710670362241 -1.7032986150239 -1.22849899191074 -1.33845577042191 Max fold change below threshold 4 1.7032986150239 Max fold change below threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1779934_at SPBC13E7.01.S1 --- 1.70318575345541 --- --- --- --- 5.39778614044189 5.41147327423096 7.95923900604248 3.35648036003113 0.334473013877869 0.129638999700546 0.0561522990465164 0.219482004642487 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13E7.01 /GEN=cwf22 /DEF=conserved eukaryotic protein --- --- --- --- --- --- D89100 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0139. // gb // 11 // --- /// SPBC13E7.01 // |cwf22|SPBC15D4.16|conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.70318575345541 1.00253569397396 1.59081174892743 1.47453767136297 -1.60816854605157 Max fold change below threshold 4 1.70318575345541 Max fold change below threshold AAAAMA No 4 0 AAMA 3 0 1 No No x = 1
1776171_at YOR335C.S1 Cytoplasmic alanyl-tRNA synthetase, required for protein synthesis; point mutation (cdc64-1 allele) causes cell cycle arrest at G1; lethality of null mutation is functionally complemented by human homolog 1.70315256867655 2999.97399902344 1966.05718994141 ALA1 6419 // alanyl-tRNA aminoacylation // inferred from genetic interaction /// 6419 // alanyl-tRNA aminoacylation // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4813 // alanine-tRNA ligase activity // inferred from genetic interaction /// 4813 // alanine-tRNA ligase activity // inferred from sequence similarity 1922.86853027344 3274.9384765625 2725.00952148438 2009.24584960938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR335C /GEN=ALA1 /DB_XREF=GI:6324911 /SEG=NC_001147:-946228,949104 /DEF=Cytoplasmic alanyl-tRNA synthetase, required for protein synthesis; point mutation (cdc64-1 allele) causes cell cycle arrest at G1; lethality of null mutation is functionally complemented by human homolog /NOTE=Ala1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: alanine-tRNA ligase activity [goid GO:0004813] [evidence IGI,ISS] [pmid 7761427]; go_process: alanyl-tRNA aminoacylation [goid GO:0006419] [evidence IGI,IMP] [pmid 7761427] --- --- --- --- --- --- S0005862 // ALA1 SGDID:S0005862, Chr XV from 949104-946228, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017786 // cdna:Genscan chromosome:SGD1:XV:946228:949104:-1 // ensembl // 11 // --- /// GENEFINDER00000022656 // cdna:GeneFinder chromosome:SGD1:XV:946228:949104:-1 // ensembl // 11 // --- /// YOR335C // cdna:known chromosome:SGD1:XV:946228:949104:-1 gene:YOR335C // ensembl // 11 // --- --- No cerevisiae_gene 1.52418715959782 1.70315256867655 -1.15232299814359 1.41715852050315 1.04492107389352 Max fold change below threshold 4 1.70315256867655 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773579_at SPAC11E3.08c.S1 --- 1.70293385468825 --- --- --- --- 3.14391160011292 1.84617364406586 4.34996032714844 1.86735117435455 0.274170011281967 0.398925989866257 0.0805663987994194 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11E3.08c /GEN=cor1 /DEF=involved in cell polarity --- --- --- --- --- --- AJ002494 // Schizosaccharomyces pombe mRNA for cor1+ gene. // gb // 11 // --- /// SPAC11E3.08c // |cor1||core protein Cor1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.00606353254578 -1.70293385468825 1.6356852576961 1.38361407076211 -1.68362097247166 Max fold change below threshold 2 1.70293385468825 Max fold change below threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1770430_at YHR001W.S1 Member of an oxysterol-binding protein family with seven members in S. cerevisiae; family members have overlapping, redundant functions in sterol metabolism and collectively perform a function essential for viability 1.70287747195661 1580.884765625 1574.24267578125 OSH7 6694 // steroid biosynthesis // inferred from mutant phenotype /// 6694 // steroid biosynthesis // inferred from genetic interaction --- 8142 // oxysterol binding // inferred from sequence similarity 1546.88073730469 1542.17919921875 1619.59033203125 1601.60461425781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR001W /GEN=OSH7 /DB_XREF=GI:6321787 /SEG=NC_001140:+106049,107362 /DEF=Member of an oxysterol-binding protein family with seven members in S. cerevisiae; family members have overlapping, redundant functions in sterol metabolism and collectively perform a function essential for viability /NOTE=Osh7p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: oxysterol binding [goid GO:0008142] [evidence ISS] [pmid 11238399]; go_process: steroid biosynthesis [goid GO:0006694] [evidence IGI,IMP] [pmid 11238399] --- --- --- --- --- --- S0001043 // OSH7 SGDID:S0001043, Chr VIII from 106049-107362, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020299 // cdna:GeneFinder chromosome:SGD1:VIII:106049:107362:1 // ensembl // 11 // --- /// GENSCAN00000016554 // cdna:Genscan chromosome:SGD1:VIII:106283:107362:1 // ensembl // 11 // --- /// YHR001W // cdna:known chromosome:SGD1:VIII:106049:107362:1 gene:YHR001W // ensembl // 11 // --- --- No cerevisiae_gene -1.70287747195661 -1.00304863279723 1.11235911609229 1.04700400811329 1.03537692055593 Max fold change below threshold 4 1.70287747195661 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770604_at YBR112C.S1 General transcriptional co-repressor, acts together with Tup1p; also acts as part of a transcriptional co-activator complex that recruits the SWI/SNF and SAGA complexes to promoters 1.70263251337031 527.583511352539 448.352203369141 CYC8 6338 // chromatin remodeling // inferred from mutant phenotype /// 16481 // negative regulation of transcription // inferred from mutant phenotype /// 16481 // negative regulation of transcription // inferred from direct assay /// 16481 // negative regulation of transcription // inferred from physical interaction /// 16584 // nucleosome spacing // inferred from direct assay 5634 // nucleus // inferred from physical interaction 3713 // transcription coactivator activity // inferred from direct assay /// 3713 // transcription coactivator activity // inferred from physical interaction /// 3713 // transcription coactivator activity // inferred from mutant phenotype /// 3713 // transcription coactivator activity // inferred from genetic interaction /// 16565 // general transcriptional repressor activity // inferred from mutant phenotype /// 16565 // general transcriptional repressor activity // inferred from physical interaction /// 16565 // general transcriptional repressor activity // inferred from direct assay 423.367370605469 446.873504638672 608.293518066406 473.337036132813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR112C /GEN=CYC8 /DB_XREF=GI:6319589 /SEG=NC_001134:-462826,465726 /DEF=General transcriptional co-repressor, acts together with Tup1p; also acts as part of a transcriptional co-activator complex that recruits the SWI/SNF and SAGA complexes to promoters /NOTE=Cyc8p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 1739976]; go_function: general transcriptional repressor activity [goid GO:0016565] [evidence IDA,IMP,IPI] [pmid 1739976]; go_function: transcription coactivator activity [goid GO:0003713] [evidence IDA,IGI,IMP,IPI] [pmid 9867831]; go_process: negative regulation of transcription [goid GO:0016481] [evidence IDA,IMP,IPI] [pmid 1739976] --- --- --- --- --- --- S0000316 // CYC8 SGDID:S0000316, Chr II from 465764-462864, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021230 // cdna:Genscan chromosome:SGD1:II:462864:463952:-1 // ensembl // 11 // --- /// GENEFINDER00000022390 // cdna:GeneFinder chromosome:SGD1:II:462864:465764:-1 // ensembl // 11 // --- /// YBR112C // cdna:known chromosome:SGD1:II:462864:465764:-1 gene:YBR112C // ensembl // 11 // --- --- No cerevisiae_gene 1.70263251337031 1.05552183674331 -1.40441678177033 1.4367982993032 1.11802909009233 Max fold change below threshold 4 1.70263251337031 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777126_at YER155C.S1 Rho GTPase activating protein (RhoGAP) involved in the control of cytoskeleton organization and cellular morphogenesis; required for bud emergence 1.70262097005576 510.103897094727 746.487426757813 BEM2 226 // microtubule cytoskeleton organization and biogenesis // inferred from genetic interaction /// 7047 // cell wall organization and biogenesis // inferred from physical interaction /// 7117 // budding cell bud growth // inferred from physical interaction /// 7264 // small GTPase mediated signal transduction // inferred from physical interaction /// 30036 // actin cytoskeleton organization and biogenesis // inferred from genetic interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction 5622 // intracellular // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 4871 // signal transducer activity // inferred from physical interaction /// 5100 // Rho GTPase activator activity // inferred from direct assay 701.759643554688 412.164337158203 608.04345703125 791.215209960938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER155C /GEN=BEM2 /DB_XREF=GI:6321003 /SEG=NC_001137:-476340,482843 /DEF=Protein with role in bud emergence /NOTE=Bem2p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 9891811]; go_function: Rho GTPase activator activity [goid GO:0005100] [evidence IDA] [pmid 9891811]; go_function: signal transducer activity [goid GO:0004871] [evidence IPI] [pmid 9891811]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence IGI] [pmid 9891811]; go_process: bud growth [goid GO:0007117] [evidence IPI] [pmid 9891811]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IPI] [pmid 9891811]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IPI] [pmid 9891811]; go_process: microtubule cytoskeleton organization and biogenesis [goid GO:0000226] [evidence IGI] [pmid 7579704]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence IPI] [pmid 9891811] --- --- --- --- --- --- S0000957 // BEM2 SGDID:S0000957, Chr V from 482843-476340, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016934 // cdna:Genscan chromosome:SGD1:V:476340:482843:-1 // ensembl // 11 // --- /// GENEFINDER00000019738 // cdna:GeneFinder chromosome:SGD1:V:476340:481688:-1 // ensembl // 11 // --- /// YER155C // cdna:known chromosome:SGD1:V:476340:482843:-1 gene:YER155C // ensembl // 11 // --- --- No cerevisiae_gene -1.64107302053648 -1.70262097005576 1.26776796609388 -1.15412744835871 1.12747322709115 Max fold change below threshold 4 1.70262097005576 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778304_at YDL091C.S1 UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p, green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.70257935364477 955.201324462891 1099.83862304688 UBX3 --- 5737 // cytoplasm // inferred from direct assay --- 1065.67199707031 1012.30291748047 898.099731445313 1134.00524902344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL091C /GEN=SRP14 /DB_XREF=GI:6320112 /SEG=NC_001136:-293392,294759 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ydl091cp --- --- --- --- --- S0002249 // span:55-77 // numtm:1 S0002249 // UBX3 SGDID:S0002249, Chr IV from 294759-293392, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025032 // cdna:Genscan chromosome:SGD1:IV:293392:294759:-1 // ensembl // 11 // --- /// YDL091C // cdna:known chromosome:SGD1:IV:293392:294759:-1 gene:YDL091C // ensembl // 11 // --- --- No cerevisiae_gene -1.70257935364477 -1.05272046407085 -1.22848718930514 -1.18658536436185 1.06412221785032 Max fold change below threshold 4 1.70257935364477 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776359_at YDL036C.S1 Hypothetical protein 1.70217605160013 156.549285888672 117.80778503418 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 106.778137207031 131.343383789063 181.755187988281 128.837432861328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL036C /GEN=BSC1 /DB_XREF=GI:6320168 /SEG=NC_001136:-387510,388898 /DEF=Hypothetical ORF /NOTE=Ydl036cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002194 // YDL036C SGDID:S0002194, Chr IV from 388898-387510, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023662 // cdna:GeneFinder chromosome:SGD1:IV:387510:388850:-1 // ensembl // 11 // --- /// GENSCAN00000025073 // cdna:Genscan chromosome:SGD1:IV:387510:388307:-1 // ensembl // 11 // --- /// YDL036C // cdna:known chromosome:SGD1:IV:387510:388898:-1 gene:YDL036C // ensembl // 11 // --- --- No cerevisiae_gene 1.42221297171173 1.2300587669403 -1.06063660822399 1.70217605160013 1.2065900027037 Max fold change below threshold 4 1.70217605160013 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772233_at YGL136C.S1 Mitochondrial 21S rRNA methyltransferase, required for methylation of U(2791) in 21S rRNA; MRM2 deletion confers thermosensitive respiration and loss of mitochondrial DNA; has similarity to Spb1p and Trm7p, and to E. coli FtsJ/RrmJ 1.70197176782962 702.620422363281 786.921783447266 MRM2 154 // rRNA modification // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 8650 // rRNA (uridine-2'-O-)-methyltransferase activity // inferred from mutant phenotype /// 8650 // rRNA (uridine-2'-O-)-methyltransferase activity // inferred from direct assay 761.153442382813 660.730163574219 744.510681152344 812.690124511719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL136C /GEN=MRM2 /DB_XREF=GI:6321302 /SEG=NC_001139:-252900,253862 /DEF=Mitochondrial rRNA Methyltransferase; methylates the 21S (mitochondrial) rRNA at position U2791 /NOTE=Mrm2p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11867542]; go_function: rRNA (uridine-2'-O-)-methyltransferase activity [goid GO:0008650] [evidence IDA,IMP] [pmid 11867542]; go_process: rRNA modification [goid GO:0000154] [evidence IMP] [pmid 11867542] --- --- --- --- --- --- S0003104 // MRM2 SGDID:S0003104, Chr VII from 253864-252902, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019247 // cdna:Genscan chromosome:SGD1:VII:252902:253864:-1 // ensembl // 11 // --- /// YGL136C // cdna:known chromosome:SGD1:VII:252902:253864:-1 gene:YGL136C // ensembl // 11 // --- --- No cerevisiae_gene -1.29335589398843 -1.15198833706237 1.70197176782962 -1.02235395898513 1.06770866327237 Max fold change below threshold 4 1.70197176782962 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778013_at SPAC2F3.13c.S1 --- 1.70175393672322 --- --- --- --- 4.1153564453125 3.15473985671997 6.85394048690796 5.44039869308472 0.423828125 0.432372987270355 0.149657994508743 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2F3.13c /DEF=tRNA-ribosyltransferase (predicted) --- --- --- --- --- --- SPAC2F3.13c // |||tRNA-ribosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.55951327659212 -1.30449946183242 1.70175393672322 1.66545488294575 1.32197508657639 Max fold change below threshold 4 1.70175393672322 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771830_at YLR291C.S1 Beta subunit of the translation initiation factor eIF2B, the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression 1.70102675510693 786.377349853516 1126.74377441406 GCD7 6413 // translational initiation // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5840 // ribosome // traceable author statement /// 5851 // eukaryotic translation initiation factor 2B complex // inferred from direct assay 3743 // translation initiation factor activity // traceable author statement /// 30234 // enzyme regulator activity // inferred from genetic interaction /// 30234 // enzyme regulator activity // inferred from mutant phenotype 1118.62744140625 657.618957519531 915.1357421875 1134.86010742188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR291C /GEN=GCD7 /DB_XREF=GI:6323322 /SEG=NC_001144:-718319,719464 /DEF=Beta subunit of the translation initiation factor eIF2B, the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression /NOTE=Gcd7p; go_component: eukaryotic translation initiation factor 2B complex [goid GO:0005851] [evidence IDA] [pmid 8336705]; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 9841679]; go_function: translation initiation factor activity [goid GO:0003743] [evidence TAS] [pmid 9841679]; go_process: translational initiation [goid GO:0006413] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0004282 // GCD7 SGDID:S0004282, Chr XII from 719464-718319, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018046 // cdna:Genscan chromosome:SGD1:XII:718319:719464:-1 // ensembl // 11 // --- /// GENEFINDER00000024687 // cdna:GeneFinder chromosome:SGD1:XII:718319:719464:-1 // ensembl // 11 // --- /// YLR291C // cdna:known chromosome:SGD1:XII:718319:719464:-1 gene:YLR291C // ensembl // 11 // --- --- No cerevisiae_gene 1.31293090767189 -1.70102675510693 1.08031147790719 -1.22236231177282 1.01451123530031 Max fold change below threshold 4 1.70102675510693 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771145_at YIL038C.S1 Subunit of the CCR4-NOT complex, which is a global transcriptional regulator with roles in transcription initiation and elongation and in mRNA degradation 1.70094844930748 719.021057128906 1095.94506835938 NOT3 289 // poly(A) tail shortening // inferred from direct assay /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay /// 30015 // CCR4-NOT core complex // inferred from physical interaction 175 // 3'-5'-exoribonuclease activity // inferred from direct assay 1083.0341796875 801.318420410156 636.723693847656 1108.85595703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL038C /GEN=NOT3 /DB_XREF=GI:6322151 /SEG=NC_001141:-280141,282651 /DEF=Subunit of the CCR4-NOT complex, which is a global transcriptional regulator with roles in transcription initiation and elongation and in mRNA degradation /NOTE=Not3p; go_component: CCR4-NOT core complex [goid GO:0030015] [evidence IPI] [pmid 10490603]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11889048]; go_function: 3'-5'-exoribonuclease activity [goid GO:0000175] [evidence IDA] [pmid 11889048]; go_process: poly(A) tail shortening [goid GO:0000289] [evidence IDA] [pmid 11889048]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IPI] [pmid 10490603] --- --- --- --- --- --- S0001300 // NOT3 SGDID:S0001300, Chr IX from 282651-280141, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016448 // cdna:Genscan chromosome:SGD1:IX:280141:282651:-1 // ensembl // 11 // --- /// GENEFINDER00000019112 // cdna:GeneFinder chromosome:SGD1:IX:280141:282651:-1 // ensembl // 11 // --- /// YIL038C // cdna:known chromosome:SGD1:IX:280141:282651:-1 gene:YIL038C // ensembl // 11 // --- --- No cerevisiae_gene -1.25084040556018 -1.3515653104956 -1.07335271378202 -1.70094844930748 1.02384207057177 Max fold change below threshold 4 1.70094844930748 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774744_at YDR282C.S1 Hypothetical protein 1.70069409495225 380.11408996582 241.897346496582 --- --- --- --- 239.189468383789 353.440063476563 406.788116455078 244.605224609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR282C /GEN=PHM6 /DB_XREF=GI:6320488 /SEG=NC_001136:-1023503,1024747 /DEF=Hypothetical ORF /NOTE=Ydr282cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002690 // YDR282C SGDID:S0002690, Chr IV from 1024749-1023505, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023551 // cdna:GeneFinder chromosome:SGD1:IV:1023505:1024749:-1 // ensembl // 11 // --- /// GENSCAN00000025317 // cdna:Genscan chromosome:SGD1:IV:1023505:1024749:-1 // ensembl // 11 // --- /// YDR282C // cdna:known chromosome:SGD1:IV:1023505:1024749:-1 gene:YDR282C // ensembl // 11 // --- --- No cerevisiae_gene -1.39075377768961 1.47765729764261 1.52319875045939 1.70069409495225 1.02264211824283 Max fold change below threshold 4 1.70069409495225 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770828_at YKL002W.S1 Class E Vps protein of the ESCRT-III complex, required for sorting of integral membrane proteins into lumenal vesicles of multivesicular bodies, and for delivery of newly synthesized vacuolar enzymes to the vacuole, involved in endocytosis 1.70054450182189 2068.35784912109 1995.22674560547 DID4 43162 // ubiquitin-dependent protein catabolism via the multivesicular body pathway // inferred from curator /// 45053 // protein-Golgi retention // inferred from mutant phenotype /// 45324 // late endosome to vacuole transport // inferred from physical interaction 815 // ESCRT III complex // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 5515 // protein binding // traceable author statement 2004.59924316406 1956.97473144531 2179.74096679688 1985.85424804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL002W /GEN=DID4 /DB_XREF=GI:9755336 /SEG=NC_001143:+437421,438187 /DEF=Class E Vps protein of the ESCRT-III complex, required for sorting of integral membrane proteins into lumenal vesicles of multivesicular bodies, and for delivery of newly synthesized vacuolar enzymes to the vacuole, involved in endocytosis /NOTE=Did4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12194857]; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 12194857]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 12194857]; go_process: late endosome to vacuole transport [goid GO:0045324] [evidence IPI] [pmid 12194857]; go_process: protein-Golgi retention [goid GO:0045053] [evidence IMP] [pmid 8649377] --- --- --- --- --- --- S0001485 // DID4 SGDID:S0001485, Chr XI from 437421-437480,437549-438187, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000018416 // cdna:Genscan chromosome:SGD1:XI:437732:438187:1 // ensembl // 11 // --- /// GENEFINDER00000023085 // cdna:GeneFinder chromosome:SGD1:XI:437732:438187:1 // ensembl // 11 // --- /// YKL002W // cdna:known chromosome:SGD1:XI:437421:438187:1 gene:YKL002W // ensembl // 11 // --- --- No cerevisiae_gene -1.70054450182189 -1.02433578265141 1.0638518830933 1.08736994400755 -1.00943926027584 Max fold change below threshold 4 1.70054450182189 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771644_at YOL133W.S1 RING finger containing subunit of Skp1-Cullin-F-box ubiquitin protein ligases (SCF); required for Gic2p, Far1p, Sic1p and Cln2p degradation; may tether Cdc34p (a ubiquitin conjugating enzyme or E2) and Cdc53p (a cullin) subunits of SCF 1.70021399518819 1067.29077148438 1702.00024414063 HRT1 82 // G1/S transition of mitotic cell cycle // traceable author statement /// 86 // G2/M transition of mitotic cell cycle // traceable author statement /// 16567 // protein ubiquitination // inferred from physical interaction /// 31146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from direct assay 152 // nuclear ubiquitin ligase complex // traceable author statement /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 19005 // SCF ubiquitin ligase complex // inferred from direct assay /// 19005 // SCF ubiquitin ligase complex // inferred from physical interaction 4842 // ubiquitin-protein ligase activity // traceable author statement /// 4842 // ubiquitin-protein ligase activity // inferred from direct assay /// 5515 // protein binding // traceable author statement /// 5515 // protein binding // inferred from physical interaction 1666.90063476563 980.406372070313 1154.17517089844 1737.09985351563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL133W /GEN=HRT1 /DB_XREF=GI:6324438 /SEG=NC_001147:+70324,70689 /DEF=High level expression Reduces Ty3 Transposition /NOTE=Hrt1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11080155]; go_component: nuclear ubiquitin ligase complex [goid GO:0000152] [evidence TAS] [pmid 10465783]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11080155]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 10230407]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 10465783]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence IDA] [pmid 10230407]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 10465783]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence TAS] [pmid 10465783]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence TAS] [pmid 10465783]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10465783] --- --- --- --- --- --- S0005493 // HRT1 SGDID:S0005493, Chr XV from 70324-70689, Verified ORF // sgd // 11 // --- /// YOL133W // cdna:known chromosome:SGD1:XV:70324:70689:1 gene:YOL133W // ensembl // 11 // --- YOL134C // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene 1.08786994013292 -1.70021399518819 -1.04061398987876 -1.44423539580051 1.04211361930393 Max fold change below threshold 4 1.70021399518819 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778883_at YIL040W.S1 Protein involved in nucleocytoplasmic transport of mRNA 1.70004475679388 522.503952026367 832.345153808594 APQ12 6406 // mRNA-nucleus export // inferred from mutant phenotype 5635 // nuclear membrane // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay --- 769.116943359375 592.598083496094 452.409820556641 895.573364257813 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL040W /GEN=CBR1 /DB_XREF=GI:6322149 /SEG=NC_001141:+277722,278138 /DEF=Protein of unknown function, localizes to the endoplasmic reticulum /NOTE=Yil040wp --- --- --- --- --- S0001302 // span:40-62,69-91 // numtm:2 S0001302 // APQ12 SGDID:S0001302, Chr IX from 277722-278138, Uncharacterized ORF // sgd // 11 // --- /// YIL040W // cdna:known chromosome:SGD1:IX:277722:278138:1 gene:YIL040W // ensembl // 11 // --- --- No cerevisiae_gene 1.29802752306683 -1.29787281595966 1.22812480259835 -1.70004475679388 1.16441767664888 Max fold change below threshold 4 1.70004475679388 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776817_at YPR172W.S1 Protein of unknown function, transcriptionally activated by Yrm1p along with genes involved in multidrug resistance 1.69989055515805 1032.9514465332 983.986022949219 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 957.703186035156 751.378723144531 1314.52416992188 1010.26885986328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR172W /GEN=BSP1 /DB_XREF=GI:6325430 /SEG=NC_001148:+885790,886392 /DEF=Protein of unknown function, transcriptionally activated by Yrm1p along with genes involved in multidrug resistance /NOTE=Ypr172wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006376 // YPR172W SGDID:S0006376, Chr XVI from 885792-886394, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017316 // cdna:Genscan chromosome:SGD1:XVI:885792:886394:1 // ensembl // 11 // --- /// GENEFINDER00000020832 // cdna:GeneFinder chromosome:SGD1:XVI:885792:886394:1 // ensembl // 11 // --- /// YPR172W // cdna:known chromosome:SGD1:XVI:885792:886394:1 gene:YPR172W // ensembl // 11 // --- --- No cerevisiae_gene -1.46189515764626 -1.27459449746881 1.69989055515805 1.37257992777902 1.0548872287308 Max fold change below threshold 4 1.69989055515805 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780178_s_at YFR031C-A.S1 Protein component of the large (60S) ribosomal subunit, identical to Rpl2Ap and has similarity to E. coli L2 and rat L8 ribosomal proteins; expression is upregulated at low temperatures /// Protein component of the large (60S) ribosomal subunit, identical to Rpl2Bp and has similarity to E. coli L2 and rat L8 ribosomal proteins 1.6995904217375 3658.38305664063 5486.18090820313 RPL2B /// RPL2A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 6053.50830078125 3561.74536132813 3755.02075195313 4918.853515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR031C-A /GEN=RPL2A /DB_XREF=GI:14318555 /SEG=NC_001138:-220495,221406 /DEF=Protein component of the large (60S) ribosomal subunit, identical to Rpl2Bp and has similarity to E. coli L2 and rat L8 ribosomal proteins /NOTE=Rpl2ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0002104 // RPL2A SGDID:S0002104, Chr VI from 221406-221403,221255-220495, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0001280 // RPL2B SGDID:S0001280, Chr IX from 316766-316769,317170-317930, intron sequence removed, Verified ORF // sgd // 11 // --- /// U17360 // Saccharomyces cerevisiae ribosomal protein YL6b mRNA, partial cds. // gb // 11 // --- /// GENEFINDER00000019042 // cdna:GeneFinder chromosome:SGD1:IX:315091:317930:1 // ensembl // 11 // --- /// GENEFINDER00000018581 // cdna:GeneFinder chromosome:SGD1:VI:220495:221611:-1 // ensembl // 11 // --- /// YIL018W // cdna:known chromosome:SGD1:IX:316766:317930:1 gene:YIL018W // ensembl // 11 // --- /// YFR031C-A // cdna:known chromosome:SGD1:VI:220495:221406:-1 gene:YFR031C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.05090356318924 -1.6995904217375 -1.46664703658294 -1.6121104783862 -1.23067464431538 Max fold change below threshold 4 1.6995904217375 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773539_at YGL005C.S1 Component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tethering complex that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments 1.69957278798925 236.265602111816 192.670890808105 COG7 6891 // intra-Golgi transport // inferred from physical interaction /// 6891 // intra-Golgi transport // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay /// 17119 // Golgi transport complex // inferred from physical interaction --- 167.020629882813 217.451812744141 255.079391479492 218.321151733398 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL005C /GEN=COG7 /DB_XREF=GI:6321433 /SEG=NC_001139:-489710,490549 /DEF=Conserved Oligomeric Golgi complex 7 Complexed with Cog8p /NOTE=Cog7p; go_component: Golgi transport complex [goid GO:0017119] [evidence IPI] [pmid 11703943]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: intra-Golgi transport [goid GO:0006891] [evidence IGI,IPI] [pmid 11703943] --- --- --- --- --- --- S0002973 // COG7 SGDID:S0002973, Chr VII from 490551-489712, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019337 // cdna:Genscan chromosome:SGD1:VII:489712:490551:-1 // ensembl // 11 // --- /// YGL005C // cdna:known chromosome:SGD1:VII:489712:490551:-1 gene:YGL005C // ensembl // 11 // --- --- No cerevisiae_gene -1.69957278798925 1.3019458308636 1.2401515312085 1.52723284338267 1.30715081057101 Max fold change below threshold 4 1.69957278798925 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774727_at YLR421C.S1 Subunit of the 19S regulatory particle of the 26S proteasome lid 1.69950281964175 509.899948120117 512.1513671875 RPN13 6508 // proteolysis and peptidolysis // inferred from mutant phenotype /// 6508 // proteolysis and peptidolysis // inferred from physical interaction 8541 // proteasome regulatory particle, lid subcomplex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // inferred from physical interaction 450.256408691406 314.464874267578 705.335021972656 574.046325683594 0.00122069998178631 0.00292969006113708 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR421C /GEN=RPN13 /DB_XREF=GI:6323453 /SEG=NC_001144:-965086,965556 /DEF=Subunit of the 19S regulatory particle of the 26S proteasome lid /NOTE=Rpn13p; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence IDA] [pmid 11029046]; go_function: endopeptidase activity [goid GO:0004175] [evidence IPI] [pmid 11029046]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence IMP,IPI] [pmid 11029046] --- --- --- --- --- --- S0004413 // RPN13 SGDID:S0004413, Chr XII from 965556-965086, reverse complement, Verified ORF // sgd // 11 // --- /// YLR421C // cdna:known chromosome:SGD1:XII:965086:965556:-1 gene:YLR421C // ensembl // 11 // --- --- No cerevisiae_gene 1.6838487618478 -1.43181781348426 1.69950281964175 1.5665185622179 1.27493204894509 Max fold change below threshold 4 1.69950281964175 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771002_at YLR007W.S1 Essential nuclear protein required for DNA repair; forms a complex with Smc5p and Smc6p 1.699246997733 671.417205810547 1090.81335449219 NSE1 6281 // DNA repair // inferred from direct assay /// 8283 // cell proliferation // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 30915 // Smc5-Smc6 complex // inferred from physical interaction --- 1079.50183105469 707.551940917969 635.282470703125 1102.12487792969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR007W /GEN=NSE1 /DB_XREF=GI:6323035 /SEG=NC_001144:+164391,165401 /DEF=Essential nuclear protein required for DNA repair; forms a complex with Smc5p and Rhc18p /NOTE=Nse1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11927594]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA repair [goid GO:0006281] [evidence IDA] [pmid 11927594]; go_process: cell proliferation [goid GO:0008283] [evidence IDA] [pmid 11927594] --- --- --- --- --- --- S0003997 // NSE1 SGDID:S0003997, Chr XII from 164391-165401, Verified ORF // sgd // 11 // --- /// GENSCAN00000017754 // cdna:Genscan chromosome:SGD1:XII:164391:165401:1 // ensembl // 11 // --- /// GENEFINDER00000024649 // cdna:GeneFinder chromosome:SGD1:XII:164391:165401:1 // ensembl // 11 // --- /// YLR007W // cdna:known chromosome:SGD1:XII:164391:165401:1 gene:YLR007W // ensembl // 11 // --- --- No cerevisiae_gene -1.45819187603501 -1.52568563327543 -1.25541885381447 -1.699246997733 1.02095693237768 Max fold change below threshold 4 1.699246997733 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774801_at YOR184W.S1 3-phosphoserine aminotransferase, catalyzes the formation of phosphoserine from 3-phosphohydroxypyruvate, required for serine and glycine biosynthesis; regulated by the general control of amino acid biosynthesis mediated by Gcn4p 1.69919209445518 1683.08233642578 1418.30688476563 SER1 6564 // L-serine biosynthesis // inferred from sequence similarity /// 6564 // L-serine biosynthesis // inferred from mutant phenotype /// 9070 // serine family amino acid biosynthesis // inferred from mutant phenotype /// 9113 // purine base biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4648 // phosphoserine transaminase activity // inferred from mutant phenotype /// 4648 // phosphoserine transaminase activity // inferred from sequence similarity 1379.76733398438 1490.73327636719 1875.43139648438 1456.84643554688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR184W /GEN=SER1 /DB_XREF=GI:6324758 /SEG=NC_001147:+679357,680544 /DEF=phosphoserine transaminase /NOTE=Ser1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: phosphoserine transaminase activity [goid GO:0004648] [evidence IMP,ISS] [pmid 8017107]; go_process: L-serine biosynthesis [goid GO:0006564] [evidence IMP,ISS] [pmid 8017107]; go_process: purine base biosynthesis [goid GO:0009113] [evidence IMP] [pmid 10509016]; go_process: serine family amino acid biosynthesis [goid GO:0009070] [evidence IMP] [pmid 1326413] --- --- --- --- --- --- S0005710 // SER1 SGDID:S0005710, Chr XV from 679357-680544, Verified ORF // sgd // 11 // --- /// GENSCAN00000017601 // cdna:Genscan chromosome:SGD1:XV:679357:680544:1 // ensembl // 11 // --- /// GENEFINDER00000022560 // cdna:GeneFinder chromosome:SGD1:XV:679357:680544:1 // ensembl // 11 // --- /// YOR184W // cdna:known chromosome:SGD1:XV:679357:680544:1 gene:YOR184W // ensembl // 11 // --- --- No cerevisiae_gene 1.69919209445518 1.0804236624898 1.10383432654573 1.35923742379714 1.05586383998519 Max fold change below threshold 4 1.69919209445518 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770653_at YGR214W.S1 Protein component of the small (40S) ribosomal subunit, nearly identical to Rps0Bp; required for maturation of 18S rRNA along with Rps0Bp; deletion of either RPS0 gene reduces growth rate, deletion of both genes is lethal 1.69878766956542 1338.05395507813 1828.82922363281 RPS0A 28 // ribosomal small subunit assembly and maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 1847.22998046875 1150.66125488281 1525.44665527344 1810.42846679688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR214W /GEN=RPS0A /DB_XREF=GI:6321653 /SEG=NC_001139:+920578,921791 /DEF=Protein component of the small (40S) ribosomal subunit, nearly identical to Rps0Bp; required for maturation of 18S rRNA along with Rps0Bp; deletion of either RPS0 gene reduces growth rate, deletion of both genes is lethal /NOTE=Rps0ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: ribosomal small subunit assembly and maintenance [goid GO:0000028] [evidence IMP] [pmid 8626693] --- --- --- --- --- --- S0003446 // RPS0A SGDID:S0003446, Chr VII from 920580-920669,921125-921793, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021706 // cdna:GeneFinder chromosome:SGD1:VII:920580:921793:1 // ensembl // 11 // --- /// YGR214W // cdna:known chromosome:SGD1:VII:920580:921793:1 gene:YGR214W // ensembl // 11 // --- GENSCAN00000019507 // ensembl // 2 // Cross Hyb Matching Probes No cerevisiae_gene 1.69878766956542 -1.6053638485089 -1.53578740511894 -1.21094367612457 -1.02032751602552 Max fold change below threshold 4 1.69878766956542 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769697_at YBR002C.S1 Cis-prenyltransferase involved in dolichol synthesis; participates in endoplasmic reticulum (ER) protein sorting 1.6985593639231 394.816528320313 615.771484375 RER2 6486 // protein amino acid glycosylation // inferred from direct assay /// 6486 // protein amino acid glycosylation // inferred from mutant phenotype /// 6888 // ER to Golgi transport // inferred from mutant phenotype /// 19408 // dolichol biosynthesis // inferred from direct assay 5783 // endoplasmic reticulum // inferred from direct assay 4659 // prenyltransferase activity // inferred from direct assay /// 45547 // dehydrodolichyl diphosphate synthase activity // inferred from direct assay 539.445617675781 317.590087890625 472.04296875 692.097351074219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR002C /GEN=RER2 /DB_XREF=GI:6319474 /SEG=NC_001134:-241672,242532 /DEF=cis-prenyltransferase involved in dolichol synthesis /NOTE=Rer2p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11442630]; go_function: prenyltransferase activity [goid GO:0004659] [evidence IDA] [pmid 9858571]; go_process: dolichol biosynthesis [goid GO:0019408] [evidence IDA] [pmid 10217761]; go_process: protein amino acid glycosylation [goid GO:0006486] [evidence IDA,IMP] [pmid 9858571] --- --- --- --- --- --- S0000206 // RER2 SGDID:S0000206, Chr II from 242570-241710, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021140 // cdna:Genscan chromosome:SGD1:II:241710:242456:-1 // ensembl // 11 // --- /// YBR002C // cdna:known chromosome:SGD1:II:241710:242570:-1 gene:YBR002C // ensembl // 11 // --- --- No cerevisiae_gene 1.41482055835091 -1.6985593639231 1.28160703720872 -1.14278922341385 1.28297891093479 Max fold change below threshold 4 1.6985593639231 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772518_at SPAC1F7.06.S1 --- 1.69852201368989 --- --- --- --- 8.9866247177124 9.69422340393066 15.2639799118042 6.05531215667725 0.5 0.398925989866257 0.194580003619194 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F7.06 /DEF=conserved fungal protein --- --- --- --- --- --- SPAC1F7.06 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.31299174724739 1.07873909375826 1.11848680469044 1.69852201368989 -1.48408942184802 Max fold change below threshold 4 1.69852201368989 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778793_at YMR235C.S1 GTPase activating protein (GAP) for Gsp1p, involved in nuclear transport 1.69810341805848 507.803955078125 726.619659423828 RNA1 54 // ribosome-nucleus export // inferred from mutant phenotype /// 6407 // rRNA-nucleus export // inferred from mutant phenotype /// 6606 // protein-nucleus import // inferred from direct assay /// 16072 // rRNA metabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 5098 // Ran GTPase activator activity // inferred from direct assay 701.956298828125 413.376647949219 602.231262207031 751.283020019531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR235C /GEN=RNA1 /DB_XREF=GI:6323891 /SEG=NC_001145:-741511,742734 /DEF=GTPase activating protein (GAP) for Gsp1p, involved in nuclear transport /NOTE=Rna1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 8755533]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8755533]; go_function: Ran GTPase activator activity [goid GO:0005098] [evidence IDA] [pmid 9305944]; go_process: protein-nucleus import [goid GO:0006606] [evidence IDA] [pmid 7657689]; go_process: rRNA metabolism [goid GO:0016072] [evidence IMP] [pmid 12837249]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence IMP] [pmid 11739405]; go_process: ribosome-nucleus export [goid GO:0000054] [evidence IMP] [pmid 11739405] --- --- --- --- --- --- S0004848 // RNA1 SGDID:S0004848, Chr XIII from 742734-741511, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018912 // cdna:Genscan chromosome:SGD1:XIII:741511:742734:-1 // ensembl // 11 // --- /// GENEFINDER00000021991 // cdna:GeneFinder chromosome:SGD1:XIII:741511:742734:-1 // ensembl // 11 // --- /// YMR235C // cdna:known chromosome:SGD1:XIII:741511:742734:-1 gene:YMR235C // ensembl // 11 // --- --- No cerevisiae_gene 1.67234236211369 -1.69810341805848 1.0515367904917 -1.16559259354226 1.07027035910035 Max fold change below threshold 4 1.69810341805848 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772901_at YHR003C.S1 Hypothetical protein 1.69783459884257 453.22998046875 496.753524780273 --- --- 5739 // mitochondrion // inferred from direct assay --- 465.051055908203 368.952575683594 537.507385253906 528.455993652344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR003C /GEN=LEU5 /DB_XREF=GI:6321790 /SEG=NC_001140:-110022,111311 /DEF=Hypothetical ORF /NOTE=Yhr003cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001045 // YHR003C SGDID:S0001045, Chr VIII from 111311-110022, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016555 // cdna:Genscan chromosome:SGD1:VIII:110022:111311:-1 // ensembl // 11 // --- /// GENEFINDER00000020192 // cdna:GeneFinder chromosome:SGD1:VIII:110022:111311:-1 // ensembl // 11 // --- /// YHR003C // cdna:known chromosome:SGD1:VIII:110022:111311:-1 gene:YHR003C // ensembl // 11 // --- --- No cerevisiae_gene 1.69783459884257 -1.2604629607113 1.32386009836868 1.15580295631025 1.13633973504332 Max fold change below threshold 4 1.69783459884257 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770768_at YER139C.S1 Hypothetical protein 1.69774445912441 362.530136108398 500.513168334961 --- --- 5737 // cytoplasm // inferred from direct assay --- 466.750152587891 322.171539306641 402.888732910156 534.276184082031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER139C /GEN=GDI1 /DB_XREF=GI:6320987 /SEG=NC_001137:-450558,451238 /DEF=Hypothetical ORF /NOTE=Yer139cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000941 // YER139C SGDID:S0000941, Chr V from 451238-450558, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000016918 // cdna:Genscan chromosome:SGD1:V:450558:451238:-1 // ensembl // 10 // --- /// YER139C // cdna:known chromosome:SGD1:V:450558:451238:-1 gene:YER139C // ensembl // 10 // --- --- No cerevisiae_gene -1.29042159229125 -1.44876283483142 1.69774445912441 -1.15850882504569 1.14467275719085 Max fold change below threshold 4 1.69774445912441 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776858_at YML088W.S1 F-box receptor protein, subunit of the Skp1-Cdc53-F-box receptor (SCF) E3 ubiquitin ligase complex; binds to phosphorylated Ho endonuclease, allowing its ubiquitylation by SCF and subsequent degradation 1.69768926814568 589.367370605469 605.60888671875 UFO1 6511 // ubiquitin-dependent protein catabolism // inferred from mutant phenotype /// 6511 // ubiquitin-dependent protein catabolism // inferred from physical interaction /// 6974 // response to DNA damage stimulus // inferred from mutant phenotype /// 6974 // response to DNA damage stimulus // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 19005 // SCF ubiquitin ligase complex // inferred from physical interaction 4842 // ubiquitin-protein ligase activity // inferred from mutant phenotype /// 5515 // protein binding // inferred from direct assay 590.363464355469 419.784484863281 758.950256347656 620.854309082031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML088W /GEN=UFO1 /DB_XREF=GI:6323551 /SEG=NC_001145:+92235,94241 /DEF=F-box receptor protein, subunit of the Skp1-Cdc53-F-box receptor (SCF) E3 ubiquitin ligase complex; binds to phosphorylated Ho endonuclease, allowing its ubiquitylation by SCF and subsequent degradation /NOTE=Ufo1p; go_component: SCF ubiquitin ligase complex [goid GO:0019005] [evidence IPI] [pmid 14506225]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14506225]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14506225]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 14506225]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence IMP] [pmid 10963670]; go_process: response to DNA damage stimulus [goid GO:0006974] [evidence IMP] [pmid 10963670]; go_process: response to DNA damage stimulus [goid GO:0006974] [evidence IPI] [pmid 14506225]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence IMP] [pmid 10963670]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence IPI] [pmid 14506225] --- --- --- --- --- --- S0004553 // UFO1 SGDID:S0004553, Chr XIII from 92235-94241, Verified ORF // sgd // 11 // --- /// GENSCAN00000018643 // cdna:Genscan chromosome:SGD1:XIII:92235:94241:1 // ensembl // 11 // --- /// GENEFINDER00000022022 // cdna:GeneFinder chromosome:SGD1:XIII:93102:94241:1 // ensembl // 11 // --- /// YML088W // cdna:known chromosome:SGD1:XIII:92235:94241:1 gene:YML088W // ensembl // 11 // --- --- No cerevisiae_gene -1.69768926814568 -1.40634893771203 -1.01257125281957 1.28556440594819 1.05164758079982 Max fold change below threshold 4 1.69768926814568 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770590_at YGL108C.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery 1.69754418955353 169.755584716797 127.945274353027 --- --- --- --- 113.569320678711 146.722229003906 192.788940429688 142.321228027344 0.000244140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL108C /GEN=CUE3 /DB_XREF=GI:6321330 /SEG=NC_001139:-303650,304072 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery /NOTE=Ygl108cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003076 // YGL108C SGDID:S0003076, Chr VII from 304074-303652, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019270 // cdna:Genscan chromosome:SGD1:VII:303652:304074:-1 // ensembl // 11 // --- /// GENEFINDER00000021549 // cdna:GeneFinder chromosome:SGD1:VII:303652:304044:-1 // ensembl // 9 // --- /// YGL108C // cdna:known chromosome:SGD1:VII:303652:304074:-1 gene:YGL108C // ensembl // 11 // --- YGL109W // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene 1.40518836864068 1.29191781836034 1.46909952452539 1.69754418955353 1.25316614713204 Max fold change below threshold 4 1.69754418955353 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778546_at YOR269W.S1 Protein involved in nuclear migration, part of the dynein/dynactin pathway; targets dynein to microtubule tips, which is necessary for sliding of microtubules along bud cortex; synthetic lethal with bni1; homolog of human LIS1 1.69731128844457 281.684707641602 327.921646118164 PAC1 30473 // nuclear migration, microtubule-mediated // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5881 // cytoplasmic microtubule // inferred from direct assay --- 305.240234375 254.112884521484 309.256530761719 350.603057861328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR269W /GEN=PAC1 /DB_XREF=GI:6324843 /SEG=NC_001147:+826382,827866 /DEF=Protein involved in nuclear migration, part of the dynein/dynactin pathway; targets dynein to microtubule tips, which is necessary for sliding of microtubules along bud cortex; synthetic lethal with bni1; homolog of human LIS1 /NOTE=Pac1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytoplasmic microtubule [goid GO:0005881] [evidence IDA] [pmid 12566428]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: nuclear migration (sensu Saccharomyces) [goid GO:0000065] [evidence IMP] [pmid 12566428] --- --- --- --- --- --- S0005795 // PAC1 SGDID:S0005795, Chr XV from 826382-827866, Verified ORF // sgd // 11 // --- /// GENSCAN00000017701 // cdna:Genscan chromosome:SGD1:XV:826382:827866:1 // ensembl // 11 // --- /// YOR269W // cdna:known chromosome:SGD1:XV:826382:827866:1 gene:YOR269W // ensembl // 11 // --- --- No cerevisiae_gene 1.39909561100696 -1.20119936047238 -1.69731128844457 1.01315782106819 1.14861351282609 Max fold change below threshold 4 1.69731128844457 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777397_at SPAC16C9.02c.S1 --- 1.6968136654491 --- --- --- --- 5.48611783981323 3.62720584869385 6.33288431167603 3.76349949836731 0.0952147990465164 0.111571997404099 0.194580003619194 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16C9.02c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPAC16C9.02c // |||S-methyl-5-thioadenosine phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.62779691260803 -1.51249145172965 -1.6968136654491 1.15434711695723 -1.4577171704668 Max fold change below threshold 4 1.6968136654491 Max fold change below threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1770558_at YDL105W.S1 Nuclear protein that plays a role in the function of the Smc5p-Rhc18p complex 1.69665357768399 39.6835260391235 36.7386341094971 NSE4 6281 // DNA repair // inferred from mutant phenotype /// 6281 // DNA repair // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 30915 // Smc5-Smc6 complex // inferred from physical interaction --- 38.3578338623047 31.56614112854 47.800910949707 35.1194343566895 0.00585938012227416 0.00415039015933871 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL105W /GEN=QRI2 /DB_XREF=GI:6320098 /SEG=NC_001136:+272389,273597 /DEF=Product of gene unknown /NOTE=Qri2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002263 // QRI2 SGDID:S0002263, Chr IV from 272389-273597, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023485 // cdna:GeneFinder chromosome:SGD1:IV:272389:273597:1 // ensembl // 11 // --- /// GENSCAN00000025021 // cdna:Genscan chromosome:SGD1:IV:272389:273597:1 // ensembl // 11 // --- /// YDL105W // cdna:known chromosome:SGD1:IV:272389:273597:1 gene:YDL105W // ensembl // 11 // --- --- No cerevisiae_gene 1.05220453421666 -1.21515752293283 1.69665357768399 1.24618379445776 -1.0922110382737 Max fold change below threshold 4 1.69665357768399 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1772810_at YKR090W.S1 LIM domain-containing protein that localizes to sites of polarized growth, required for selection and/or maintenance of polarized growth sites, may modulate signaling by the GTPases Cdc42p and Rho1p; has similarity to metazoan paxillin 1.69656747001631 412.433517456055 651.806457519531 PXL1 30469 // maintenance of cell polarity (sensu Fungi) // inferred from mutant phenotype 131 // incipient bud site // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5933 // bud // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay 5515 // protein binding // inferred from sequence similarity 609.241271972656 359.102294921875 465.764739990234 694.371643066406 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR090W /GEN=PXL1 /DB_XREF=GI:6322943 /SEG=NC_001143:+608587,610707 /DEF=LIM domain-containing protein that localizes to sites of polarized growth, required for selection and/or maintenance of polarized growth sites, may modulate signaling by the GTPases Cdc42p and Rho1p; has similarity to metazoan paxillin /NOTE=Pxl1p; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 14562095]; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 14767053]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 14767053]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 14767053]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 14767053]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 14767053]; go_process: maintenance of cell polarity (sensu Fungi) [goid GO:0030469] [evidence IMP] [pmid 14767053] --- --- --- --- --- --- S0001798 // PXL1 SGDID:S0001798, Chr XI from 608588-610708, Verified ORF // sgd // 11 // --- /// GENSCAN00000018492 // cdna:Genscan chromosome:SGD1:XI:608588:610708:1 // ensembl // 11 // --- /// GENEFINDER00000023065 // cdna:GeneFinder chromosome:SGD1:XI:608588:610708:1 // ensembl // 11 // --- /// YKR090W // cdna:known chromosome:SGD1:XI:608588:610708:1 gene:YKR090W // ensembl // 11 // --- --- No cerevisiae_gene 1.05765487999219 -1.69656747001631 -1.40176798596689 -1.30804507010434 1.13973178609208 Max fold change below threshold 4 1.69656747001631 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778984_at YGL251C.S1 Meiosis specific DNA helicase involved in the conversion of double-stranded breaks to later recombination intermediates and in crossover control; catalyzes the unwinding of Holliday junctions; has ssDNA and dsDNA stimulated ATPase activity 1.6965301165618 54.2879638671875 47.1212348937988 HFM1 6268 // DNA unwinding // inferred from direct assay /// 7126 // meiosis // inferred from direct assay /// 7129 // synapsis // inferred from genetic interaction /// 7129 // synapsis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 3678 // DNA helicase activity // inferred from direct assay 46.0525283813477 60.5260925292969 48.0498352050781 48.18994140625 0.00122069998178631 0.0107421996071935 0.00585938012227416 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL251C /GEN=HFM1 /DB_XREF=GI:9755332 /SEG=NC_001139:-27921,31636 /DEF=Meoisis specific DNA helicase involved in the conversion of double-standed breaks to later recombination intermediates and in crossover control; catalyzes the unwinding of Holliday junctions; has ssDNA and dsDNA stimulated ATPase activity /NOTE=Hfm1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11971962]; go_function: DNA helicase activity [goid GO:0003678] [evidence IDA] [pmid 11971962]; go_process: DNA unwinding [goid GO:0006268] [evidence IDA] [pmid 12039965]; go_process: meiosis [goid GO:0007126] [evidence IDA] [pmid 11971962] --- --- --- --- --- --- S0003220 // HFM1 SGDID:S0003220, Chr VII from 31636-31579,31426-27921, reverse complement, intron sequence removed, Verified ORF // sgd // 10 // --- /// GENSCAN00000019163 // cdna:Genscan chromosome:SGD1:VII:27921:31061:-1 // ensembl // 10 // --- /// YGL251C // cdna:known chromosome:SGD1:VII:27921:31636:-1 gene:YGL251C // ensembl // 10 // --- --- No cerevisiae_gene 1.12615252616838 1.31428381147931 1.6965301165618 1.04337018821619 1.04641250111618 Max fold change below threshold 4 1.6965301165618 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1773936_at YIL055C.S1 Hypothetical protein 1.69593552259091 3343.66979980469 2328.169921875 --- --- --- --- 2287.8046875 3879.96923828125 2807.37036132813 2368.53515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL055C /GEN=SNP1 /DB_XREF=GI:6322134 /SEG=NC_001141:-252040,253923 /DEF=Hypothetical ORF /NOTE=Yil055cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001317 // YIL055C SGDID:S0001317, Chr IX from 253923-252040, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016436 // cdna:Genscan chromosome:SGD1:IX:252040:253923:-1 // ensembl // 11 // --- /// GENEFINDER00000019054 // cdna:GeneFinder chromosome:SGD1:IX:252040:253923:-1 // ensembl // 11 // --- /// YIL055C // cdna:known chromosome:SGD1:IX:252040:253923:-1 gene:YIL055C // ensembl // 11 // --- --- No cerevisiae_gene 1.04732261157155 1.69593552259091 -1.28519407314451 1.22710228572697 1.03528730804299 Max fold change below threshold 4 1.69593552259091 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775136_at YMR097C.S1 Peripheral GTPase of the mitochondrial inner membrane, essential for respiratory competence, likely functions in assembly of the large ribosomal subunit, has homologs in plants and animals 1.6953679942413 512.121871948242 679.282897949219 MTG1 6412 // protein biosynthesis // inferred from direct assay /// 42255 // ribosome assembly // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay 3924 // GTPase activity // inferred from sequence similarity 677.28125 399.489227294922 624.754516601563 681.284545898438 0.000244140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR097C /GEN=MTG1 /DB_XREF=GI:6323744 /SEG=NC_001145:-459423,460526 /DEF=Peripheral GTPase of the mitochondrial inner membrane, essential for respiratory competence, likely functions in assembly of the large ribosomal subunit, has homologues in plants and animals /NOTE=Mtg1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 12808030]; go_function: GTPase activity [goid GO:0003924] [evidence ISS] [pmid 12808030]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 12808030]; go_process: ribosome assembly [goid GO:0042255] [evidence IMP] [pmid 12808030] --- --- --- --- --- --- S0004703 // MTG1 SGDID:S0004703, Chr XIII from 460526-459423, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018793 // cdna:Genscan chromosome:SGD1:XIII:459423:460442:-1 // ensembl // 11 // --- /// GENEFINDER00000021791 // cdna:GeneFinder chromosome:SGD1:XIII:459423:460526:-1 // ensembl // 11 // --- /// YMR097C // cdna:known chromosome:SGD1:XIII:459423:460526:-1 gene:YMR097C // ensembl // 11 // --- --- No cerevisiae_gene -1.67558286373595 -1.6953679942413 1.25937955996516 -1.08407579617697 1.0059108323144 Max fold change below threshold 4 1.6953679942413 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777467_at YNL157W.S1 Hypothetical protein 1.69527528799477 5115.82495117188 3475.66284179688 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 3593.6796875 6092.2763671875 4139.37353515625 3357.64599609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL157W /GEN=ASI2 /DB_XREF=GI:6324172 /SEG=NC_001146:+340352,340858 /DEF=Hypothetical ORF /NOTE=Ynl157wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005101 // YNL157W SGDID:S0005101, Chr XIV from 340352-340858, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019912 // cdna:Genscan chromosome:SGD1:XIV:340352:340858:1 // ensembl // 11 // --- /// YNL157W // cdna:known chromosome:SGD1:XIV:340352:340858:1 gene:YNL157W // ensembl // 11 // --- --- No cerevisiae_gene -1.00876650319806 1.69527528799477 -1.08743985350007 1.15184821550856 -1.07029737252851 Max fold change below threshold 4 1.69527528799477 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779737_at YDL165W.S1 Component of the CCR4-NOT complex, which has multiple roles in regulating mRNA levels including regulation of transcription and destabilizing mRNAs by deadenylation; basal transcription factor 1.69511251242668 656.614227294922 460.704010009766 CDC36 74 // regulation of cell cycle // inferred from mutant phenotype /// 122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 288 // mRNA catabolism, deadenylylation-dependent decay // inferred from genetic interaction /// 288 // mRNA catabolism, deadenylylation-dependent decay // inferred from mutant phenotype /// 288 // mRNA catabolism, deadenylylation-dependent decay // inferred from direct assay /// 289 // poly(A) tail shortening // inferred from direct assay /// 749 // response to pheromone during conjugation with cellular fusion // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 30015 // CCR4-NOT core complex // inferred from physical interaction 175 // 3'-5'-exoribonuclease activity // traceable author statement 443.0283203125 562.24560546875 750.982849121094 478.379699707031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL165W /GEN=CDC36 /DB_XREF=GI:6320036 /SEG=NC_001136:+164291,164866 /DEF=Component of the CCR4-NOT complex, which has multiple roles in regulating mRNA levels including regulation of transcription and destabilizing mRNAs by deadenylation; basal transcription factor /NOTE=Cdc36p; go_component: CCR4-NOT core complex [goid GO:0030015] [evidence IPI] [pmid 10490603]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11889048]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 7926748]; go_function: 3'-5'-exoribonuclease activity [goid GO:0000175] [evidence TAS] [pmid 11889048]; go_process: mRNA catabolism, deadenylation-dependent [goid GO:0000288] [evidence IDA,IGI,IMP] [pmid 11889048]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence TAS] [pmid 7926748]; go_process: poly(A) tail shortening [goid GO:0000289] [evidence IDA] [pmid 11889048]; go_process: regulation of cell cycle [goid GO:0000074] [evidence IMP] [pmid 2111445]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IPI] [pmid 10490603]; go_process: response to pheromone during conjugation with cellular fusion [goid GO:0000749] [evidence IMP] [pmid 2111445] --- --- --- --- --- --- S0002324 // CDC36 SGDID:S0002324, Chr IV from 164291-164866, Verified ORF // sgd // 11 // --- /// YDL165W // cdna:known chromosome:SGD1:IV:164291:164866:1 gene:YDL165W // ensembl // 11 // --- --- No cerevisiae_gene -1.25751926625468 1.26909630759532 1.40307492819528 1.69511251242668 1.07979485232365 Max fold change below threshold 4 1.69511251242668 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778295_at YAL055W.S1 Putative peroxisomal membrane protein required for import of peroxisomal proteins, functionally complements a Pichia pastoris pex22 mutation 1.69464205128547 246.133842468262 354.218414306641 PEX22 6625 // protein-peroxisome targeting // inferred from sequence similarity 5777 // peroxisome // inferred from sequence similarity --- 329.398773193359 247.791702270508 244.475982666016 379.038055419922 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL055W /GEN=PEX22 /DB_XREF=GI:6319263 /SEG=NC_001133:+42178,42720 /DEF=Product of gene unknown /NOTE=Pex22p; go_component: peroxisome [goid GO:0005777] [evidence ISS] [pmid 10402463]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-peroxisome targeting [goid GO:0006625] [evidence ISS] [pmid 10402463] --- --- --- --- --- S0000051 // span:15-32 // numtm:1 S0000051 // PEX22 SGDID:S0000051, Chr I from 42178-42720, Verified ORF // sgd // 11 // --- /// GENSCAN00000020330 // cdna:Genscan chromosome:SGD1:I:42178:42720:1 // ensembl // 11 // --- /// YAL055W // cdna:known chromosome:SGD1:I:42178:42720:1 gene:YAL055W // ensembl // 11 // --- --- No cerevisiae_gene -1.15444911102916 -1.32933738367786 1.69464205128547 -1.34736659855606 1.15069662143952 Max fold change below threshold 4 1.69464205128547 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777061_at SPBC8D2.04.S1 --- 1.69423654734683 --- --- --- --- 5.2572979927063 8.90710639953613 6.7768726348877 5.14556074142456 0.194580003619194 0.171387001872063 0.171387001872063 0.0239257998764515 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC8D2.04 /GEN=hht2 /DEF=histone H3 --- --- --- --- --- --- SPBC8D2.04 // |hht2|h3.2|histone H3|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.34434081158218 1.69423654734683 1.40177870041893 1.2890409948779 -1.02171527203677 Max fold change below threshold 4 1.69423654734683 Max fold change below threshold APAPAP No 4 0 AAAP 3 1 0 No No x = 1
1776229_at YKR019C.S1 Protein involved in regulation of phosphatidylinositol 4,5-bisphosphate concentrations; Irs4p and Tax4p bind and activate the phosphatase Inp51p; mutation confers an increase in rDNA silencing 1.69410191451662 175.13939666748 187.65869140625 IRS4 183 // chromatin silencing at ribosomal DNA // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from genetic interaction /// 48017 // inositol lipid-mediated signaling // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay --- 194.038970947266 172.654525756836 177.624267578125 181.278411865234 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR019C /GEN=IRS4 /DB_XREF=GI:6322871 /SEG=NC_001143:-475859,477706 /DEF=Protein involved in rDNA silencing, contains a C-terminal Eps15 homology (EH) domain and a DNA polymerase B signature motif; mutation in IRS4 confers an increase in rDNA silencing /NOTE=Irs4p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin silencing at ribosomal DNA [goid GO:0000183] [evidence IMP] [pmid 10082585] --- --- --- --- --- --- S0001727 // IRS4 SGDID:S0001727, Chr XI from 477706-475859, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018433 // cdna:Genscan chromosome:SGD1:XI:475859:477706:-1 // ensembl // 11 // --- /// GENEFINDER00000023053 // cdna:GeneFinder chromosome:SGD1:XI:475859:477364:-1 // ensembl // 11 // --- /// YKR019C // cdna:known chromosome:SGD1:XI:475859:477706:-1 gene:YKR019C // ensembl // 11 // --- --- No cerevisiae_gene -1.69410191451662 -1.12385684705738 1.41747620303576 -1.09241250417498 -1.07039205027633 Max fold change below threshold 4 1.69410191451662 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775492_at YDL040C.S1 Subunit of the N-terminal acetyltransferase NatA (Nat1p, Ard1p, Nat5p); N-terminally acetylates many proteins, which influences multiple processes such as the cell cycle, heat-shock resistance, mating, sporulation, and telomeric silencing 1.69392902568761 652.677947998047 675.783752441406 NAT1 6473 // protein amino acid acetylation // traceable author statement 5622 // intracellular // traceable author statement /// 5737 // cytoplasm // inferred from curator /// 5739 // mitochondrion // inferred from direct assay /// 5830 // cytosolic ribosome (sensu Eukaryota) // inferred from direct assay 4596 // peptide alpha-N-acetyltransferase activity // traceable author statement 610.579345703125 534.085388183594 771.2705078125 740.988159179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL040C /GEN=NAT1 /DB_XREF=GI:6320164 /SEG=NC_001136:-378871,381435 /DEF=Required for entry into stationary phase, heat shock-resistance, a mating-type functions, and sporulation; forms a complex with Ard1p /NOTE=Nat1p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 1600941]; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 11274203]; go_function: peptide alpha-N-acetyltransferase activity [goid GO:0004596] [evidence TAS] [pmid 1600941]; go_process: protein amino acid acetylation [goid GO:0006473] [evidence TAS] [pmid 1600941] --- --- --- --- --- --- S0002198 // NAT1 SGDID:S0002198, Chr IV from 381435-378871, reverse complement, Verified ORF // sgd // 11 // --- /// M23166 // S.cerevisiae N-acetyltransferase (AAA1) mRNA, complete cds. // gb // 11 // --- /// GENEFINDER00000023522 // cdna:GeneFinder chromosome:SGD1:IV:378871:381435:-1 // ensembl // 11 // --- /// GENSCAN00000025071 // cdna:Genscan chromosome:SGD1:IV:378871:381435:-1 // ensembl // 11 // --- /// YDL040C // cdna:known chromosome:SGD1:IV:378871:381435:-1 gene:YDL040C // ensembl // 11 // --- --- No cerevisiae_gene 1.69392902568761 -1.14322420948396 1.27358319875023 1.26317818190251 1.21358209116358 Max fold change below threshold 4 1.69392902568761 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776887_at YPR083W.S1 Protein required for normal mitochondrial morphology and inheritance 1.69391278576044 269.473564147949 335.377288818359 MDM36 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype --- --- 314.655517578125 254.267135620117 284.679992675781 356.099060058594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR083W /GEN=MDM36 /DB_XREF=GI:6325340 /SEG=NC_001148:+704850,706589 /DEF=Mitochondrial Distribution and Morphology /NOTE=Mdm36p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence IMP] [pmid 11907266] --- --- --- --- scop // a.3.1.Two-domain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; Two-domain cytochrome c // 1.89999997615814 --- S0006287 // MDM36 SGDID:S0006287, Chr XVI from 704852-706591, Verified ORF // sgd // 11 // --- /// GENSCAN00000017247 // cdna:Genscan chromosome:SGD1:XVI:704852:706591:1 // ensembl // 11 // --- /// YPR083W // cdna:known chromosome:SGD1:XVI:704852:706591:1 gene:YPR083W // ensembl // 11 // --- GENEFINDER00000020782 // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene -1.69391278576044 -1.23749975320534 1.09172948855124 -1.10529550960219 1.13171083983989 Max fold change below threshold 4 1.69391278576044 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778187_at YKL222C.S1 Hypothetical protein 1.69372840421243 132.406406402588 121.901321411133 --- --- --- --- 126.639808654785 119.299522399902 145.513290405273 117.16283416748 0.00122069998178631 0.00195312988944352 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL222C /DB_XREF=GI:6322627 /SEG=NC_001143:-3504,5621 /DEF=Hypothetical ORF /NOTE=Ykl222cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001705 // YKL222C SGDID:S0001705, Chr XI from 5621-3504, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018250 // cdna:Genscan chromosome:SGD1:XI:3504:4628:-1 // ensembl // 11 // --- /// YKL222C // cdna:known chromosome:SGD1:XI:3504:5621:-1 gene:YKL222C // ensembl // 11 // --- --- No cerevisiae_gene -1.69372840421243 -1.06152821157387 1.57888642601305 1.14903277216674 -1.08088720757435 Max fold change below threshold 4 1.69372840421243 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769331_at YHL007C.S1 Signal transducing kinase of the PAK (p21-activated kinase) family, involved in pheromone response and pseudohyphal/invasive growth pathways, activated by Cdc42p; binds Ste4p at a GBB motif present in noncatalytic domains of PAK kinases 1.69368045977449 314.921478271484 424.705902099609 STE20 282 // bud site selection // inferred from mutant phenotype /// 750 // signal transduction during conjugation with cellular fusion // traceable author statement /// 1403 // invasive growth (sensu Saccharomyces) // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from direct assay /// 7096 // regulation of exit from mitosis // inferred from mutant phenotype /// 7124 // pseudohyphal growth // traceable author statement 131 // incipient bud site // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay 4674 // protein serine/threonine kinase activity // inferred from direct assay 401.038360595703 277.886932373047 351.956024169922 448.373443603516 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL007C /GEN=STE20 /DB_XREF=GI:6321780 /SEG=NC_001140:-95113,97932 /DEF=Involved in pheromone response and pseudohyphal growth pathways /NOTE=Ste20p; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 9003780]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 9003780]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence IDA] [pmid 7608157]; go_process: bud site selection [goid GO:0000282] [evidence IMP] [pmid 11452010]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 7608157]; go_process: pseudohyphal growth [goid GO:0007124] [evidence TAS] [pmid 9024634]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence TAS] [pmid 9024634] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 4.0E-67 /// hanks // 2.1.17 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH // 4.0E-75 --- --- S0000999 // STE20 SGDID:S0000999, Chr VIII from 97932-95113, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016550 // cdna:Genscan chromosome:SGD1:VIII:95113:97041:-1 // ensembl // 11 // --- /// GENEFINDER00000020151 // cdna:GeneFinder chromosome:SGD1:VIII:95113:97932:-1 // ensembl // 11 // --- /// YHL007C // cdna:known chromosome:SGD1:VIII:95113:97932:-1 gene:YHL007C // ensembl // 11 // --- --- No cerevisiae_gene 1.69368045977449 -1.44317099465956 1.20393403202517 -1.13945587816416 1.11803130986647 Max fold change below threshold 4 1.69368045977449 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772348_at YBR235W.S1 Hypothetical protein 1.69351102296783 188.391136169434 220.167297363281 --- --- --- 15075 // ion transporter activity // inferred from sequence similarity 196.964645385742 169.145812988281 207.636459350586 243.36994934082 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR235W /GEN=ARC40 /DB_XREF=GI:6319712 /SEG=NC_001134:+686858,690220 /DEF=Hypothetical ORF /NOTE=Ybr235wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: ion transporter activity [goid GO:0015075] [evidence ISS] [pmid 8526903]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000439 // span:88-110,144-166,197-214,221-243,287-306,319-341,364-386,393-415,430-452,473-495 // numtm:10 S0000439 // YBR235W SGDID:S0000439, Chr II from 686896-690258, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022407 // cdna:GeneFinder chromosome:SGD1:II:688192:690258:1 // ensembl // 11 // --- /// GENSCAN00000021326 // cdna:Genscan chromosome:SGD1:II:688690:690258:1 // ensembl // 11 // --- /// YBR235W // cdna:known chromosome:SGD1:II:686896:690258:1 gene:YBR235W // ensembl // 11 // --- --- No cerevisiae_gene -1.33165222870588 -1.16446657417047 1.69351102296783 1.05418136815337 1.23560220091375 Max fold change below threshold 4 1.69351102296783 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774707_at YOR261C.S1 Essential, non-ATPase regulatory subunit of the 26S proteasome; has similarity to the human p40 proteasomal subunit and to another S. cerevisiae regulatory subunit, Rpn11p 1.69280052558851 2792.03381347656 1853.44812011719 RPN8 6511 // ubiquitin-dependent protein catabolism // traceable author statement 8541 // proteasome regulatory particle, lid subcomplex (sensu Eukaryota) // inferred from direct assay /// 8541 // proteasome regulatory particle, lid subcomplex (sensu Eukaryota) // inferred from physical interaction --- 1797.09265136719 3042.11938476563 2541.9482421875 1909.80358886719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR261C /GEN=RPN8 /DB_XREF=GI:6324835 /SEG=NC_001147:-815913,816929 /DEF=Regulatory Particle Non-ATPase, homolog of mammalian proteasomal subunit S12/p40 /NOTE=Rpn8p; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence TAS] [pmid 9697412]; go_component: proteasome regulatory particle, lid subcomplex (sensu Eukarya) [goid GO:0008541] [evidence IDA] [pmid 11742986]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 9697412]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 9697412] --- --- --- --- --- --- S0005787 // RPN8 SGDID:S0005787, Chr XV from 816929-815913, reverse complement, Verified ORF // sgd // 11 // --- /// YOR261C // cdna:known chromosome:SGD1:XV:815913:816929:-1 gene:YOR261C // ensembl // 11 // --- --- No cerevisiae_gene -1.13624006276966 1.69280052558851 1.2338421236069 1.41447812401528 1.06271849000899 Max fold change below threshold 4 1.69280052558851 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770589_at YOR252W.S1 Hypothetical protein 1.69223894963017 149.704429626465 235.813621520996 --- --- 5634 // nucleus // inferred from direct assay --- 225.999267578125 134.731903076172 164.676956176758 245.627975463867 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR252W /GEN=CLP1 /DB_XREF=GI:6324826 /SEG=NC_001147:+803777,804202 /DEF=Hypothetical ORF /NOTE=Yor252wp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005778 // YOR252W SGDID:S0005778, Chr XV from 803777-804202, Uncharacterized ORF // sgd // 11 // --- /// YOR252W // cdna:known chromosome:SGD1:XV:803777:804202:1 gene:YOR252W // ensembl // 11 // --- --- No cerevisiae_gene 1.69223894963017 -1.6773998022603 1.12933776370784 -1.37237943198043 1.08685297123344 Max fold change below threshold 4 1.69223894963017 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774511_at YDL243C.S1 Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role /// Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase, involved in the oxidative stress response 1.69185660076147 30.0891933441162 22.5198097229004 AAD16 /// AAD4 6081 // aldehyde metabolism // inferred from sequence similarity --- 18456 // aryl-alcohol dehydrogenase activity // inferred from sequence similarity 22.5810527801514 21.9744834899902 38.2039031982422 22.4585666656494 0.00292969006113708 0.00292969006113708 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL243C /GEN=AAD4 /DB_XREF=GI:6319958 /SEG=NC_001136:-17577,18566 /DEF=Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase, involved in the oxidative stress response /NOTE=Aad4p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: aryl-alcohol dehydrogenase activity [goid GO:0018456] [evidence ISS] [pmid 10572264]; go_process: aldehyde metabolism [goid GO:0006081] [evidence ISS] [pmid 10572264] --- --- --- --- scop // a.2.10.Epsilon subunit of F1F0-ATP synthase C-terminal domain // All alpha proteins; Long alpha-hairpin; Epsilon subunit of F1F0-ATP synthase C-terminal domain; Epsilon subunit of F1F0-ATP synthase C-terminal domain // 2.40000009536743 --- S0002402 // AAD4 SGDID:S0002402, Chr IV from 18566-17577, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023737 // cdna:GeneFinder chromosome:SGD1:IV:17577:18557:-1 // ensembl // 11 // --- /// GENSCAN00000024921 // cdna:Genscan chromosome:SGD1:IV:17577:18566:-1 // ensembl // 11 // --- /// YDL243C // cdna:known chromosome:SGD1:IV:17577:18566:-1 gene:YDL243C // ensembl // 11 // --- --- No cerevisiae_gene -1.5097659003495 -1.02760334687445 1.22961709100661 1.69185660076147 -1.005453870513 Max fold change below threshold 4 1.69185660076147 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777145_at YJR080C.S1 The authentic, non-tagged protein was localized to the mitochondria 1.69185282808892 1153.53100585938 856.257202148438 --- --- 5739 // mitochondrion // inferred from direct assay --- 799.525695800781 1045.98986816406 1261.07214355469 912.988708496094 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR080C /GEN=BNA2 /DB_XREF=GI:6322540 /SEG=NC_001142:-580346,581530 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Yjr080cp --- --- --- --- --- --- S0003841 // FMP26 SGDID:S0003841, Chr X from 581530-580346, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024197 // cdna:Genscan chromosome:SGD1:X:580346:581530:-1 // ensembl // 11 // --- /// YJR080C // cdna:known chromosome:SGD1:X:580346:581530:-1 gene:YJR080C // ensembl // 11 // --- --- No cerevisiae_gene 1.00454653405122 1.30826297848555 1.69185282808892 1.57727531482479 1.14191290322655 Max fold change below threshold 4 1.69185282808892 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774936_at YPL112C.S1 Peripheral peroxisomal membrane peroxin required for the regulation of peroxisome size and maintenance, recruits GTPase Rho1p to peroxisomes, induced by oleate, interacts with homologous protein Pex27p 1.69183129962057 598.438049316406 1075.94906616211 PEX25 7031 // peroxisome organization and biogenesis // inferred from mutant phenotype /// 7031 // peroxisome organization and biogenesis // inferred from sequence similarity /// 7031 // peroxisome organization and biogenesis // inferred from expression pattern /// 16558 // peroxisome matrix protein import // inferred from mutant phenotype 5778 // peroxisomal membrane // inferred from direct assay --- 1006.60028076172 594.976745605469 601.899353027344 1145.2978515625 0.000244141003349796 0.000732421991415322 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL112C /GEN=PEX25 /DB_XREF=GI:6325145 /SEG=NC_001148:-337435,338619 /DEF=required for regulation of peroxisome size and maintenance /NOTE=Pex25p; go_component: peroxisomal membrane [goid GO:0005778] [evidence IDA] [pmid 12135984]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence IEP,IMP,ISS] [pmid 12135984] --- --- --- --- --- --- S0006033 // PEX25 SGDID:S0006033, Chr XVI from 338619-337435, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020919 // cdna:GeneFinder chromosome:SGD1:XVI:337351:338619:-1 // ensembl // 11 // --- /// YPL112C // cdna:known chromosome:SGD1:XVI:337435:338619:-1 gene:YPL112C // ensembl // 11 // --- --- No cerevisiae_gene 1.48127783788385 -1.69183129962057 -1.00850859273633 -1.67237308978465 1.13778813045415 Max fold change below threshold 4 1.69183129962057 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778261_at YNL099C.S1 Putative protein tyrosine phosphatase, required for cell cycle arrest in response to oxidative damage of DNA 1.69181112847541 724.815704345703 1134.60772705078 OCA1 6979 // response to oxidative stress // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4725 // protein tyrosine phosphatase activity // inferred from sequence similarity 1091.34838867188 645.076965332031 804.554443359375 1177.86706542969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL099C /GEN=OCA1 /DB_XREF=GI:6324230 /SEG=NC_001146:-438567,439283 /DEF=Putative protein tyrosine phosphatase, required for cell cycle arrest in response to oxidative damage of DNA /NOTE=Oca1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein tyrosine phosphatase activity [goid GO:0004725] [evidence ISS] [pmid 11408586]; go_process: response to oxidative stress [goid GO:0006979] [evidence IMP] [pmid 11408586] --- --- --- --- --- --- S0005043 // OCA1 SGDID:S0005043, Chr XIV from 439283-438567, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019954 // cdna:Genscan chromosome:SGD1:XIV:438567:439283:-1 // ensembl // 11 // --- /// GENEFINDER00000020530 // cdna:GeneFinder chromosome:SGD1:XIV:438567:439283:-1 // ensembl // 11 // --- /// YNL099C // cdna:known chromosome:SGD1:XIV:438567:439283:-1 gene:YNL099C // ensembl // 11 // --- --- No cerevisiae_gene 1.22907140075205 -1.69181112847541 1.1612512787565 -1.35646306807406 1.07927686305846 Max fold change below threshold 4 1.69181112847541 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779775_at YBR196C.S1 Glycolytic enzyme phosphoglucose isomerase, catalyzes the interconversion of glucose-6-phosphate and fructose-6-phosphate; required for cell cycle progression and completion of the gluconeogenic events of sporulation 1.6916869883277 3496.54370117188 5102.03955078125 PGI1 6094 // gluconeogenesis // inferred from mutant phenotype /// 6096 // glycolysis // inferred from mutant phenotype /// 6098 // pentose-phosphate shunt // inferred from mutant phenotype 5829 // cytosol // traceable author statement 4347 // glucose-6-phosphate isomerase activity // inferred from mutant phenotype 5815.60107421875 3437.75244140625 3555.3349609375 4388.47802734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR196C /GEN=PGI1 /DB_XREF=GI:6319673 /SEG=NC_001134:-612193,613857 /DEF=Phosphoglucoisomerase /NOTE=Pgi1p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: glucose-6-phosphate isomerase activity [goid GO:0004347] [evidence IMP] [pmid 3007940]; go_process: gluconeogenesis [goid GO:0006094] [evidence TAS]; go_process: glycolysis [goid GO:0006096] [evidence IMP] [pmid 3007940]; go_process: pentose-phosphate shunt [goid GO:0006098] [evidence TAS] --- --- --- --- --- --- S0000400 // PGI1 SGDID:S0000400, Chr II from 613895-612231, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021296 // cdna:Genscan chromosome:SGD1:II:612231:613895:-1 // ensembl // 11 // --- /// GENEFINDER00000022393 // cdna:GeneFinder chromosome:SGD1:II:612231:613895:-1 // ensembl // 11 // --- /// YBR196C // cdna:known chromosome:SGD1:II:612231:613895:-1 gene:YBR196C // ensembl // 11 // --- --- No cerevisiae_gene -1.18887681303362 -1.6916869883277 -1.48740631083778 -1.63573928704744 -1.32519771956995 Max fold change below threshold 4 1.6916869883277 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776333_at YPR114W.S1 Hypothetical protein 1.69167168132696 1046.69653320313 1433.86022949219 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 1417.27270507813 1015.74633789063 1077.64672851563 1450.44775390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR114W /GEN=PIS1 /DB_XREF=GI:6325371 /SEG=NC_001148:+753297,754244 /DEF=Hypothetical ORF /NOTE=Ypr114wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0006318 // span:39-61,147-166,171-190,225-247,267-289 // numtm:5 S0006318 // YPR114W SGDID:S0006318, Chr XVI from 753299-754246, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017268 // cdna:Genscan chromosome:SGD1:XVI:753299:754246:1 // ensembl // 11 // --- /// GENEFINDER00000020911 // cdna:GeneFinder chromosome:SGD1:XVI:753299:754246:1 // ensembl // 11 // --- /// YPR114W // cdna:known chromosome:SGD1:XVI:753299:754246:1 gene:YPR114W // ensembl // 11 // --- --- No cerevisiae_gene 1.19071681019729 -1.39530181129803 -1.69167168132696 -1.31515520585332 1.02340766791688 Max fold change below threshold 4 1.69167168132696 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777443_at YGL127C.S1 Protein with sequence similarity to RNA polymerases; interacts with a DNA repair protein, Rad5p, in the two-hybrid system; may provide a link between recombination in direct repeats and transcription 1.69143685213435 873.160400390625 1408.0849609375 SOH1 6281 // DNA repair // inferred from physical interaction /// 6366 // transcription from RNA polymerase II promoter // inferred from genetic interaction 5634 // nucleus // inferred from direct assay --- 1453.31787109375 887.099914550781 859.220886230469 1362.85205078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL127C /GEN=SOH1 /DB_XREF=GI:6321311 /SEG=NC_001139:-270396,270779 /DEF=Soh1p has limited sequence similarity to RNA polymerases and interacts with a DNA repair protein, Rad5p, in a two-hybrid system assay; may provide a link between recombination in direct repeats and transcription /NOTE=Soh1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA repair [goid GO:0006281] [evidence IPI] [pmid 8849885]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IGI] [pmid 8849885] --- --- --- --- --- --- S0003095 // SOH1 SGDID:S0003095, Chr VII from 270781-270398, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021464 // cdna:GeneFinder chromosome:SGD1:VII:270398:270781:-1 // ensembl // 11 // --- /// YGL127C // cdna:known chromosome:SGD1:VII:270398:270781:-1 gene:YGL127C // ensembl // 11 // --- --- No cerevisiae_gene 1.16224442656301 -1.63827980056756 -1.26423818042672 -1.69143685213435 -1.06637978074043 Max fold change below threshold 4 1.69143685213435 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772473_at YPR109W.S1 Hypothetical protein 1.69097841536861 1369.83026123047 863.057678222656 --- --- --- --- 833.04443359375 1331.00036621094 1408.66015625 893.070922851563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR109W /GEN=RPN7 /DB_XREF=GI:6325366 /SEG=NC_001148:+744685,745569 /DEF=Hypothetical ORF /NOTE=Ypr109wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0006313 // span:139-158,218-240 // numtm:2 S0006313 // YPR109W SGDID:S0006313, Chr XVI from 744687-745571, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017264 // cdna:Genscan chromosome:SGD1:XVI:744687:745571:1 // ensembl // 11 // --- /// YPR109W // cdna:known chromosome:SGD1:XVI:744687:745571:1 gene:YPR109W // ensembl // 11 // --- --- No cerevisiae_gene 1.11265411837111 1.59775434843134 1.23635186026406 1.69097841536861 1.07205676772709 Max fold change below threshold 4 1.69097841536861 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778348_at YLR021W.S1 Hypothetical protein 1.69093695635058 442.938858032227 338.691635131836 --- --- --- --- 311.249176025391 359.574981689453 526.302734375 366.134094238281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR021W /GEN=PSR2 /DB_XREF=GI:6323049 /SEG=NC_001144:+183622,184161 /DEF=Hypothetical ORF /NOTE=Ylr021wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004011 // YLR021W SGDID:S0004011, Chr XII from 183622-184161, Uncharacterized ORF // sgd // 11 // --- /// YLR021W // cdna:known chromosome:SGD1:XII:183622:184161:1 gene:YLR021W // ensembl // 11 // --- GENEFINDER00000024915 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 1.15025836323574 1.15526404368736 1.43326957226155 1.69093695635058 1.17633755344757 Max fold change below threshold 4 1.69093695635058 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773141_at YOR002W.S1 Glucosyltransferase, involved in transfer of oligosaccharides from dolichyl pyrophosphate to asparagine residues of proteins during N-linked protein glycosylation; mutations in human ortholog are associated with disease 1.69044750791616 1627.81695556641 1136.77172851563 ALG6 6486 // protein amino acid glycosylation // inferred from mutant phenotype /// 6488 // dolichol-linked oligosaccharide biosynthesis // traceable author statement 5783 // endoplasmic reticulum // inferred from mutant phenotype 16758 // transferase activity, transferring hexosyl groups // inferred from mutant phenotype 1058.30224609375 1466.62951660156 1789.00439453125 1215.2412109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR002W /GEN=ALG6 /DB_XREF=GI:6324575 /SEG=NC_001147:+329417,331051 /DEF=Glucosyltransferase, involved in transfer of oligosaccharides from dolichyl pyrophosphate to asparagine residues of proteins during N-linked protein glycosylation; mutations in human ortholog are associated with disease /NOTE=Alg6p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IMP] [pmid 8877369]; go_function: transferase activity, transferring hexosyl groups [goid GO:0016758] [evidence IMP] [pmid 8877369]; go_process: dolichol-linked oligosaccharide biosynthesis [goid GO:0006488] [evidence TAS] [pmid 10336995]; go_process: protein amino acid glycosylation [goid GO:0006486] [evidence IMP] [pmid 8877369] --- --- --- --- --- S0005528 // span:103-125,140-162,226-248,263-285,331-353,358-375,382-404,424-446,472-494,509-531 // numtm:10 S0005528 // ALG6 SGDID:S0005528, Chr XV from 329417-331051, Verified ORF // sgd // 11 // --- /// YOR002W // cdna:known chromosome:SGD1:XV:329417:331051:1 gene:YOR002W // ensembl // 11 // --- --- No cerevisiae_gene 1.37446762323389 1.38583237635087 1.02158781730947 1.69044750791616 1.14829314160772 Max fold change below threshold 4 1.69044750791616 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776552_at YLR182W.S1 Transcription cofactor, forms complexes with DNA-binding proteins Swi4p and Mbp1p to regulate transcription at the G1/S transition; involved in meiotic gene expression; localization regulated by phosphorylation; potential Cdc28p substrate 1.69036568140104 448.361053466797 554.689544677734 SWI6 83 // G1/S-specific transcription in mitotic cell cycle // traceable author statement /// 6350 // transcription // traceable author statement /// 7126 // meiosis // inferred from genetic interaction /// 7126 // meiosis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3713 // transcription coactivator activity // traceable author statement /// 5515 // protein binding // inferred from physical interaction 541.6015625 385.315765380859 511.406341552734 567.777526855469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR182W /GEN=SWI6 /DB_XREF=GI:6323211 /SEG=NC_001144:+517942,520353 /DEF=Transcription cofactor, forms complexes with DNA-binding proteins Swi4p and Mbp1p to regulate transcription at the G1/S transition; involved in meiotic gene expression; localization regulated by phosphorylation; potential Cdc28p substrate /NOTE=Swi6p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12697814]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12697814]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12697814]; go_function: transcription coactivator activity [goid GO:0003713] [evidence TAS] [pmid 8423776]; go_process: G1/S-specific transcription in mitotic cell cycle [goid GO:0000083] [evidence TAS] [pmid 9628912]; go_process: meiosis [goid GO:0007126] [evidence IGI,IMP] [pmid 9628912]; go_process: transcription [goid GO:0006350] [evidence TAS] [pmid 9628912] --- --- --- --- --- --- S0004172 // SWI6 SGDID:S0004172, Chr XII from 517942-520353, Verified ORF // sgd // 11 // --- /// GENSCAN00000017962 // cdna:Genscan chromosome:SGD1:XII:517942:520353:1 // ensembl // 11 // --- /// GENEFINDER00000024756 // cdna:GeneFinder chromosome:SGD1:XII:517942:520353:1 // ensembl // 11 // --- /// YLR182W // cdna:known chromosome:SGD1:XII:517942:520353:1 gene:YLR182W // ensembl // 11 // --- --- No cerevisiae_gene -1.69036568140104 -1.40560447082839 -1.12933031282613 -1.05904350121195 1.04833066624594 Max fold change below threshold 4 1.69036568140104 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770155_at YGR027C.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps25Ap and has similarity to rat S25 ribosomal protein /// Protein component of the small (40S) ribosomal subunit; nearly identical to Rps25Bp and has similarity to rat S25 ribosomal protein 1.6901694760303 2890.72644042969 4243.27526855469 RPS25B /// RPS25A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 4676.0927734375 3014.8115234375 2766.64135742188 3810.45776367188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR027C /GEN=RPS25A /DB_XREF=GI:6321464 /SEG=NC_001139:-534134,534460 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps25Bp and has similarity to rat S25 ribosomal protein /NOTE=Rps25ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0003259 // RPS25A SGDID:S0003259, Chr VII from 534462-534136, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019359 // cdna:Genscan chromosome:SGD1:VII:534136:534462:-1 // ensembl // 11 // --- /// GENEFINDER00000021759 // cdna:GeneFinder chromosome:SGD1:VII:534136:534462:-1 // ensembl // 11 // --- /// YGR027C // cdna:known chromosome:SGD1:VII:534136:534462:-1 gene:YGR027C // ensembl // 11 // --- --- No cerevisiae_gene -1.05149073688055 -1.55103983684718 -1.51888844946904 -1.6901694760303 -1.227173495536 Max fold change below threshold 4 1.6901694760303 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776021_at YOL012C.S1 Histone variant H2AZ, exchanged for histone H2A in nucleosomes by the SWR1 complex; involved in transcriptional regulation through prevention of the spread of silent heterochromatin 1.69011716496302 1314.06530761719 1225.31011962891 HTZ1 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 30466 // chromatin silencing at silent mating-type cassette // inferred from genetic interaction /// 30466 // chromatin silencing at silent mating-type cassette // inferred from physical interaction 790 // nuclear chromatin // inferred from physical interaction /// 790 // nuclear chromatin // inferred from direct assay /// 5678 // chromatin assembly complex // inferred from physical interaction 3682 // chromatin binding // inferred from direct assay /// 3682 // chromatin binding // inferred from sequence similarity /// 3682 // chromatin binding // inferred from genetic interaction 1152.89880371094 1297.3857421875 1330.74487304688 1297.72143554688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL012C /GEN=HTZ1 /DB_XREF=GI:6324562 /SEG=NC_001147:-303579,303983 /DEF=Histone variant H2AZ, exchanged for histone H2A in nucleosomes by the SWR1 complex; involved in transcriptional regulation through prevention of the spread of silent heterochromatin /NOTE=Htz1p; go_component: chromatin assembly complex [goid GO:0005678] [evidence IPI] [pmid 11090616]; go_component: nuclear chromatin [goid GO:0000790] [evidence IDA,IPI] [pmid 11090616]; go_function: chromatin binding [goid GO:0003682] [evidence IGI,ISS] [pmid 11000274]; go_function: chromatin binding [goid GO:0003682] [evidence IDA] [pmid 11081628]; go_process: chromatin silencing at silent mating-type cassette (sensu Fungi) [goid GO:0030466] [evidence IGI,IPI] [pmid 11090616]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IGI,IMP] [pmid 11081628] --- --- --- --- --- --- S0005372 // HTZ1 SGDID:S0005372, Chr XV from 303983-303579, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017458 // cdna:Genscan chromosome:SGD1:XV:303579:303983:-1 // ensembl // 11 // --- /// GENEFINDER00000022901 // cdna:GeneFinder chromosome:SGD1:XV:303579:303983:-1 // ensembl // 11 // --- /// YOL012C // cdna:known chromosome:SGD1:XV:303579:303983:-1 gene:YOL012C // ensembl // 11 // --- --- No cerevisiae_gene 1.69011716496302 1.12532490970716 -1.12421994201151 1.15425991315412 1.12561608301595 Max fold change below threshold 4 1.69011716496302 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780116_at YJL136C.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps21Bp and has similarity to rat S21 ribosomal protein 1.69001418045259 5081.63159179688 6777.53662109375 RPS21B 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 7329.40087890625 5826.3759765625 4336.88720703125 6225.67236328125 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL136C /GEN=RPS21B /DB_XREF=GI:6322325 /SEG=NC_001142:-156468,157191 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps21Bp and has similarity to rat S21 ribosomal protein /NOTE=Rps21bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0003672 // RPS21B SGDID:S0003672, Chr X from 157191-157168,156707-156468, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YJL136C // cdna:known chromosome:SGD1:X:156468:157191:-1 gene:YJL136C // ensembl // 11 // --- --- No cerevisiae_gene -1.10573381705678 -1.25796908891392 -1.29478206024622 -1.69001418045259 -1.17728663688355 Max fold change below threshold 4 1.69001418045259 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776272_at YMR062C.S1 Mitochondrial ornithine acetyltransferase, catalyzes the fifth step in arginine biosynthesis; also possesses acetylglutamate synthase activity, regenerates acetylglutamate while forming ornithine 1.68964126598165 2066.12756347656 1291.77355957031 ECM40 6526 // arginine biosynthesis // traceable author statement /// 6592 // ornithine biosynthesis // traceable author statement /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5759 // mitochondrial matrix // non-traceable author statement 4042 // amino-acid N-acetyltransferase activity // inferred from genetic interaction /// 4042 // amino-acid N-acetyltransferase activity // inferred from direct assay /// 4358 // glutamate N-acetyltransferase activity // inferred from direct assay 1278.25476074219 2051.3876953125 2080.86743164063 1305.29235839844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR062C /GEN=ECM40 /DB_XREF=GI:6323707 /SEG=NC_001145:-395053,396378 /DEF=Mitochondrial ornithine acetyltransferase, catalyzes the fifth step in arginine biosynthesis; also possesses acetylglutamate synthase activity, regenerates acetylglutamate while forming ornithine /NOTE=Ecm40p; go_component: mitochondrial matrix [goid GO:0005759] [evidence NAS] [pmid 9847139]; go_function: amino-acid N-acetyltransferase activity [goid GO:0004042] [evidence IDA,IGI] [pmid 9428669]; go_function: glutamate N-acetyltransferase activity [goid GO:0004358] [evidence IDA] [pmid 9428669]; go_process: arginine biosynthesis [goid GO:0006526] [evidence TAS] [pmid 12603335]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584]; go_process: ornithine biosynthesis [goid GO:0006592] [evidence TAS] --- --- --- --- --- --- S0004666 // ECM40 SGDID:S0004666, Chr XIII from 396378-395053, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018765 // cdna:Genscan chromosome:SGD1:XIII:395053:396378:-1 // ensembl // 11 // --- /// GENEFINDER00000021929 // cdna:GeneFinder chromosome:SGD1:XIII:395053:396378:-1 // ensembl // 11 // --- /// YMR062C // cdna:known chromosome:SGD1:XIII:395053:396378:-1 gene:YMR062C // ensembl // 11 // --- --- No cerevisiae_gene 1.68964126598165 1.60483477810121 -1.32705127189661 1.6278972670772 1.0211519631975 Max fold change below threshold 4 1.68964126598165 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776608_at YDR350C.S1 Mitochondrial inner membrane protein required for assembly of the F0 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis 1.68939070227867 486.97412109375 823.084503173828 TCM10 6461 // protein complex assembly // inferred from direct assay /// 6461 // protein complex assembly // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay --- 772.679504394531 457.371704101563 516.576538085938 873.489501953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR350C /GEN=TCM10 /DB_XREF=GI:6320557 /SEG=NC_001136:-1176328,1178163 /DEF=functions at a post-translational stage in assembly of F0 ATPase. /NOTE=Tcm10p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 12646576]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein complex assembly [goid GO:0006461] [evidence IDA,IMP] [pmid 12646576] --- --- --- --- --- --- S0002758 // TCM10 SGDID:S0002758, Chr IV from 1178165-1176330, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025376 // cdna:Genscan chromosome:SGD1:IV:1176330:1178120:-1 // ensembl // 11 // --- /// YDR350C // cdna:known chromosome:SGD1:IV:1176330:1178165:-1 gene:YDR350C // ensembl // 11 // --- --- No cerevisiae_gene -1.18855779041859 -1.68939070227867 1.12080439313118 -1.4957696438509 1.13046806209463 Max fold change below threshold 4 1.68939070227867 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778731_at YLL045C.S1 Ribosomal protein L4 of the large (60S) ribosomal subunit, nearly identical to Rpl8Ap and has similarity to rat L7a ribosomal protein; mutation results in decreased amounts of free 60S subunits /// Ribosomal protein L4 of the large (60S) ribosomal subunit, nearly identical to Rpl8Bp and has similarity to rat L7a ribosomal protein; mutation results in decreased amounts of free 60S subunits 1.68905334900254 2661.09423828125 3932.26196289063 RPL8B /// RPL8A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 4270.373046875 2528.26416015625 2793.92431640625 3594.15087890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL045C /GEN=RPL8B /DB_XREF=GI:6322984 /SEG=NC_001144:-47858,48628 /DEF=Ribosomal protein L4 of the large (60S) ribosomal subunit, nearly identical to Rpl8Ap and has similarity to rat L7a ribosomal protein; mutation results in decreased amounts of free 60S subunits /NOTE=Rpl8bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0003968 // RPL8B SGDID:S0003968, Chr XII from 48628-47858, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017672 // cdna:Genscan chromosome:SGD1:XII:47858:48628:-1 // ensembl // 11 // --- /// GENEFINDER00000024715 // cdna:GeneFinder chromosome:SGD1:XII:47858:48628:-1 // ensembl // 11 // --- /// YLL045C // cdna:known chromosome:SGD1:XII:47858:48628:-1 gene:YLL045C // ensembl // 11 // --- YLL044W // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene 1.1161894658464 -1.68905334900254 -1.46364368239001 -1.52844979436231 -1.18814518108782 Max fold change below threshold 4 1.68905334900254 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777549_at YPR036W-A.S1 --- 1.68884279586961 8689.8974609375 6097.38916015625 --- 42493 // response to drug // inferred from expression pattern /// 42493 // response to drug // inferred from sequence similarity --- --- 6993.51953125 11810.955078125 5568.83984375 5201.2587890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR036W-A /GEN=VMA13 /DB_XREF=GI:23270401 /SEG=NC_001148:+645945,646148 /DEF=Ypr036w-ap /NOTE=go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to drug [goid GO:0042493] [evidence IEP,ISS] [pmid 11557050] --- --- --- --- --- --- S0028425 // YPR036W-A SGDID:S0028425, Chr XVI from 645947-646150, Uncharacterized ORF // sgd // 11 // --- /// YPR036W-A // cdna:known chromosome:SGD1:XVI:645947:646150:1 gene:YPR036W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.20282189407526 1.68884279586961 1.05219724901569 -1.25583060879349 -1.34458211269094 Max fold change below threshold 4 1.68884279586961 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778481_at YOR063W.S1 Protein component of the large (60S) ribosomal subunit, has similarity to E. coli L3 and rat L3 ribosomal proteins; involved in the replication and maintenance of killer double stranded RNA virus 1.68858035624308 9744.53930664063 6467.04711914063 RPL3 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 7243.69873046875 12231.5673828125 7257.51123046875 5690.3955078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR063W /GEN=RPL3 /DB_XREF=GI:6324637 /SEG=NC_001147:+444687,445850 /DEF=Protein component of the large (60S) ribosomal subunit, has similarity to E. coli L3 and rat L3 ribosomal proteins; involved in the replication and maintenance of killer double stranded RNA virus /NOTE=Rpl3p; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 3537704] --- --- --- --- --- --- S0005589 // RPL3 SGDID:S0005589, Chr XV from 444687-445850, Verified ORF // sgd // 10 // --- /// GENSCAN00000017508 // cdna:Genscan chromosome:SGD1:XV:444687:445850:1 // ensembl // 10 // --- /// GENEFINDER00000022553 // cdna:GeneFinder chromosome:SGD1:XV:444687:445850:1 // ensembl // 10 // --- /// YOR063W // cdna:known chromosome:SGD1:XV:444687:445850:1 gene:YOR063W // ensembl // 10 // --- --- No cerevisiae_gene 1.11340540791953 1.68858035624308 -1.20573572165279 1.00190682971697 -1.27296929018795 Max fold change below threshold 4 1.68858035624308 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776809_at YGR206W.S1 Hypothetical protein 1.68831597653927 341.03816986084 257.768058776855 --- --- 5768 // endosome // inferred from direct assay --- 255.088333129883 430.669708251953 251.406631469727 260.447784423828 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR206W /GEN=ADE3 /DB_XREF=GI:6321645 /SEG=NC_001139:+910435,910740 /DEF=Hypothetical ORF /NOTE=Ygr206wp; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003438 // YGR206W SGDID:S0003438, Chr VII from 910437-910742, Uncharacterized ORF // sgd // 11 // --- /// YGR206W // cdna:known chromosome:SGD1:VII:910437:910742:1 gene:YGR206W // ensembl // 11 // --- GENEFINDER00000021522 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.31172033215402 1.68831597653927 -1.01207279309604 -1.01464440949164 1.02101017803592 Max fold change below threshold 4 1.68831597653927 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772070_at YCL063W.S1 Protein involved in vacuole inheritance; acts as a vacuole-specific receptor for myosin Myo2p 1.68818401870053 49.7275199890137 71.4684524536133 VAC17 11 // vacuole inheritance // inferred from mutant phenotype 5774 // vacuolar membrane // inferred from direct assay 4872 // receptor activity // inferred from physical interaction 66.1026077270508 39.1560440063477 60.2989959716797 76.8342971801758 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL063W /GEN=VAC17 /DB_XREF=GI:6319789 /SEG=NC_001135:+17290,18561 /DEF=vacuole inheritance /NOTE=Vac17p; go_component: vacuolar membrane [goid GO:0005774] [evidence IDA] [pmid 12594460]; go_function: receptor activity [goid GO:0004872] [evidence IPI] [pmid 12642614]; go_process: vacuole inheritance [goid GO:0000011] [evidence IMP] [pmid 12594460] --- --- --- --- --- --- S0000568 // VAC17 SGDID:S0000568, Chr III from 17290-18561, Verified ORF // sgd // 11 // --- /// GENSCAN00000022419 // cdna:Genscan chromosome:SGD1:III:17290:18561:1 // ensembl // 11 // --- /// YCL063W // cdna:known chromosome:SGD1:III:17290:18561:1 gene:YCL063W // ensembl // 11 // --- --- No cerevisiae_gene 1.22799147896038 -1.68818401870053 -1.06753953001997 -1.09624723698711 1.16234895750918 Max fold change below threshold 4 1.68818401870053 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771812_at YMR263W.S1 Subunit of a histone deacetylase complex, along with Rpd3p and Sin3p, that is involved in silencing at telomeres, rDNA, and silent mating-type loci 1.68793416081067 260.681594848633 407.433288574219 SAP30 183 // chromatin silencing at ribosomal DNA // inferred from mutant phenotype /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 30466 // chromatin silencing at silent mating-type cassette // inferred from mutant phenotype 118 // histone deacetylase complex // inferred from physical interaction 4407 // histone deacetylase activity // inferred from physical interaction 421.662261962891 271.553527832031 249.809661865234 393.204315185547 0.000244141003349796 0.0107421996071935 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR263W /GEN=SAP30 /DB_XREF=GI:6323919 /SEG=NC_001145:+794918,795523 /DEF=Sap30p /NOTE=go_component: histone deacetylase complex [goid GO:0000118] [evidence IPI] [pmid 10388812]; go_function: histone deacetylase activity [goid GO:0004407] [evidence IPI] [pmid 10388812]; go_process: chromatin silencing at ribosomal DNA [goid GO:0000183] [evidence IMP] [pmid 10388812]; go_process: chromatin silencing at silent mating-type cassette (sensu Fungi) [goid GO:0030466] [evidence IMP] [pmid 10388812]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 10388812] --- --- --- --- --- --- S0004876 // SAP30 SGDID:S0004876, Chr XIII from 794918-795523, Verified ORF // sgd // 11 // --- /// YMR263W // cdna:known chromosome:SGD1:XIII:794918:795523:1 gene:YMR263W // ensembl // 11 // --- --- No cerevisiae_gene 1.06152965301006 -1.55277769848642 1.07862167764141 -1.68793416081067 -1.07237445185187 Max fold change below threshold 4 1.68793416081067 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1771479_at YNL259C.S1 Cytosolic copper metallochaperone that transports copper to the secretory vesicle copper transporter Ccc2p for eventual insertion into Fet3p, which is a multicopper oxidase required for high-affinity iron uptake 1.68764645242738 655.030426025391 479.905303955078 ATX1 6825 // copper ion transport // inferred from mutant phenotype /// 6879 // iron ion homeostasis // inferred from mutant phenotype /// 6979 // response to oxidative stress // inferred from mutant phenotype 5829 // cytosol // inferred from direct assay 16531 // copper chaperone activity // inferred from direct assay 466.937774658203 788.02587890625 522.034973144531 492.872833251953 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL259C /GEN=ATX1 /DB_XREF=GI:6324070 /SEG=NC_001146:-157643,157864 /DEF=Cytosolic copper metallochaperone that transports copper to the secretory vesicle copper transporter Ccc2p for eventual insertion into Fet3p, which is a multicopper oxidase required for high-affinity iron uptake /NOTE=Atx1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 9083054]; go_function: copper chaperone activity [goid GO:0016531] [evidence IDA] [pmid 9346482]; go_process: copper ion transport [goid GO:0006825] [evidence IMP] [pmid 9083054]; go_process: high affinity iron ion transport [goid GO:0006827] [evidence TAS] [pmid 9083055]; go_process: response to oxidative stress [goid GO:0006979] [evidence IMP] [pmid 7731983] --- --- --- --- --- --- S0005203 // ATX1 SGDID:S0005203, Chr XIV from 157864-157643, reverse complement, Verified ORF // sgd // 11 // --- /// YNL259C // cdna:known chromosome:SGD1:XIV:157643:157864:-1 gene:YNL259C // ensembl // 11 // --- --- No cerevisiae_gene 1.53187181928676 1.68764645242738 1.11083873284326 1.11799687555084 1.05554285817363 Max fold change below threshold 4 1.68764645242738 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775745_at YLR361C-A.S1 Identified by expression profiling and mass spectrometry 1.68649541280993 559.561721801758 388.764923095703 --- --- --- --- 361.176239013672 510.001373291016 609.1220703125 416.353607177734 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR361C-A /GEN=VPS38 /DB_XREF=GI:33438846 /SEG=NC_001144:-849382,849678 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Ylr361c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028845 // YLR361C-A SGDID:S0028845, Chr XII from 849678-849382, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YLR361C-A // cdna:known chromosome:SGD1:XII:849382:849678:-1 gene:YLR361C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.18822788228786 1.41205682490013 1.43647646481126 1.68649541280993 1.15277131273847 Max fold change below threshold 4 1.68649541280993 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773586_at YGL082W.S1 Hypothetical protein 1.68647507116389 692.840301513672 918.673645019531 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 897.479675292969 532.163024902344 853.517578125 939.867614746094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL082W /GEN=SCY1 /DB_XREF=GI:6321356 /SEG=NC_001139:+355828,356973 /DEF=Hypothetical ORF /NOTE=Ygl082wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003050 // YGL082W SGDID:S0003050, Chr VII from 355830-356975, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019289 // cdna:Genscan chromosome:SGD1:VII:355830:356975:1 // ensembl // 11 // --- /// GENEFINDER00000021516 // cdna:GeneFinder chromosome:SGD1:VII:355830:356975:1 // ensembl // 11 // --- /// YGL082W // cdna:known chromosome:SGD1:VII:355830:356975:1 gene:YGL082W // ensembl // 11 // --- --- No cerevisiae_gene -1.09059629540243 -1.68647507116389 1.32287866405401 -1.05150696165455 1.04722997146346 Max fold change below threshold 4 1.68647507116389 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780207_at YJL126W.S1 Nit protein, one of two proteins in S. cerevisiae with similarity to the Nit domain of NitFhit from fly and worm and to the mouse and human Nit protein which interacts with the Fhit tumor suppressor; nitrilase superfamily member 1.68619322353873 148.021148681641 254.172454833984 NIT2 --- --- 16810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from sequence similarity 232.908569335938 155.832809448242 140.209487915039 275.436340332031 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL126W /GEN=NIT2 /DB_XREF=GI:6322335 /SEG=NC_001142:+184420,185343 /DEF=Nit protein, one of two proteins in S. cerevisiae with similarity to the Nit domain of NitFhit from fly and worm and to the mouse and human Nit protein which interacts with the Fhit tumor suppressor; nitrilase superfamily member /NOTE=Nit2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [goid GO:0016810] [evidence ISS] [pmid 11380987]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003662 // NIT2 SGDID:S0003662, Chr X from 184420-185343, Verified ORF // sgd // 11 // --- /// GENSCAN00000024041 // cdna:Genscan chromosome:SGD1:X:184420:185343:1 // ensembl // 11 // --- /// GENEFINDER00000024329 // cdna:GeneFinder chromosome:SGD1:X:184420:185343:1 // ensembl // 11 // --- /// YJL126W // cdna:known chromosome:SGD1:X:184420:185343:1 gene:YJL126W // ensembl // 11 // --- --- No cerevisiae_gene -1.04501667286716 -1.4946054695452 1.68619322353873 -1.66114699368327 1.18259427344107 Max fold change below threshold 4 1.68619322353873 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778144_at YGL125W.S1 Isozyme of methylenetetrahydrofolate reductase, catalyzes the reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate in the methionine biosynthesis pathway 1.68608612409176 2048.92553710938 1431.16979980469 MET13 97 // sulfur amino acid biosynthesis // traceable author statement /// 6555 // methionine metabolism // inferred from mutant phenotype /// 6555 // methionine metabolism // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 3735 // structural constituent of ribosome // traceable author statement /// 4489 // methylenetetrahydrofolate reductase (NADPH) activity // inferred from sequence similarity /// 4489 // methylenetetrahydrofolate reductase (NADPH) activity // inferred from direct assay 1370.92395019531 1786.35522460938 2311.49584960938 1491.41564941406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL125W /GEN=MET13 /DB_XREF=GI:27808705 /SEG=NC_001139:+272524,274326 /DEF=Isozyme of methylenetetrahydrofolate reductase, catalyzes the reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate in the methionine biosynthesis pathway /NOTE=Met13p; go_component: cell [goid GO:0005623] [evidence TAS]; go_function: methylenetetrahydrofolate reductase (NADPH) activity [goid GO:0004489] [evidence IDA] [pmid 10600168]; go_function: methylenetetrahydrofolate reductase (NADPH) activity [goid GO:0004489] [evidence ISS] [pmid 8896269]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: methionine metabolism [goid GO:0006555] [evidence TAS]; go_process: methionine metabolism [goid GO:0006555] [evidence IMP] [pmid 10029993]; go_process: sulfur amino acid biosynthesis [goid GO:0000097] [evidence TAS] --- --- --- --- --- --- S0003093 // MET13 SGDID:S0003093, Chr VII from 272526-274328, Verified ORF // sgd // 11 // --- /// GENSCAN00000019256 // cdna:Genscan chromosome:SGD1:VII:272526:274328:1 // ensembl // 11 // --- /// GENEFINDER00000021659 // cdna:GeneFinder chromosome:SGD1:VII:272526:274328:1 // ensembl // 11 // --- /// YGL125W // cdna:known chromosome:SGD1:VII:272526:274328:1 gene:YGL125W // ensembl // 11 // --- --- No cerevisiae_gene -1.21302711838081 1.30303013843684 -1.11417678854121 1.68608612409176 1.08789087038824 Max fold change below threshold 4 1.68608612409176 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777528_at YPR102C.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl11Bp; involved in ribosomal assembly; depletion causes degradation of proteins and RNA of the 60S subunit; has similarity to E. coli L5 and rat L11 /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl11Ap; involved in ribosomal assembly; depletion causes degradation of proteins and RNA of the 60S subunit; has similarity to E. coli L5 and rat L11 1.68523236529111 1608.5322265625 2487.67724609375 RPL11A /// RPL11B 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 2697.45776367188 1600.64440917969 1616.42004394531 2277.89672851563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR102C /GEN=RPL11A /DB_XREF=GI:6325359 /SEG=NC_001148:-731220,731744 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl11Bp; involved in ribosomal assembly; depletion causes degradation of proteins and RNA of the 60S subunit; has similarity to E. coli L5 and rat L11 /NOTE=Rpl11ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 2277060] --- --- --- --- --- --- S0006306 // RPL11A SGDID:S0006306, Chr XVI from 731746-731222, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017259 // cdna:Genscan chromosome:SGD1:XVI:731222:731746:-1 // ensembl // 11 // --- /// GENEFINDER00000020716 // cdna:GeneFinder chromosome:SGD1:XVI:731222:731746:-1 // ensembl // 11 // --- /// YPR102C // cdna:known chromosome:SGD1:XVI:731222:731746:-1 gene:YPR102C // ensembl // 11 // --- --- No cerevisiae_gene 1.19416384803146 -1.68523236529111 -1.49780662467874 -1.66878514887009 -1.18418790891791 Max fold change below threshold 4 1.68523236529111 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775885_at SPBC1347.03.S1 --- 1.68479196107317 --- --- --- --- 4.323805809021 3.11378765106201 7.28471326828003 2.73044490814209 0.219482004642487 0.334473013877869 0.149657994508743 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1347.03 /GEN=meu14 /DEF=involved in meiosis (PMID 12759375) --- --- --- --- --- --- SPBC1347.03 // |meu14||meiotic expression upregulated |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.10420650137775 -1.38860008888091 1.66118106531793 1.68479196107317 -1.58355357990471 Max fold change below threshold 4 1.68479196107317 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778697_at YLR206W.S1 Epsin-like protein required for endocytosis and actin patch assembly and functionally redundant with Ent1p; contains clathrin-binding motif at C-terminus 1.68439819344577 1707.8037109375 2483.39392089844 ENT2 147 // actin cortical patch assembly // inferred from mutant phenotype /// 6897 // endocytosis // inferred from mutant phenotype /// 7015 // actin filament organization // inferred from mutant phenotype 30479 // actin cortical patch // inferred from physical interaction 30276 // clathrin binding // traceable author statement 2507.2783203125 1747.25598144531 1668.35144042969 2459.50952148438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR206W /GEN=ENT2 /DB_XREF=GI:6323235 /SEG=NC_001144:+554580,556421 /DEF=Epsin-like protein required for endocytosis and actin patch assembly and functionally redundant with Ent1p; contains clathrin-binding motif at C-terminus /NOTE=Ent2p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IPI] [pmid 10652251]; go_function: clathrin binding [goid GO:0030276] [evidence TAS] [pmid 12461563]; go_process: actin cortical patch assembly [goid GO:0000147] [evidence IMP] [pmid 10449404]; go_process: actin filament organization [goid GO:0007015] [evidence IMP] [pmid 10449404]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 10449404] --- --- --- --- --- --- S0004196 // ENT2 SGDID:S0004196, Chr XII from 554580-556421, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024573 // cdna:GeneFinder chromosome:SGD1:XII:554580:556421:1 // ensembl // 11 // --- /// YLR206W // cdna:known chromosome:SGD1:XII:554580:556421:1 gene:YLR206W // ensembl // 11 // --- --- No cerevisiae_gene -1.68439819344577 -1.43498053344107 -1.37181622108205 -1.50284781704432 -1.01942208331005 Max fold change below threshold 4 1.68439819344577 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777680_at SPBC16A3.05c.S1 --- 1.68437499434249 --- --- --- --- 5.98917484283447 9.38934993743896 9.97186946868896 3.55572533607483 0.0676269978284836 0.219482004642487 0.0952147990465164 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16A3.05c /GEN=rae1 /DEF=WD repeat protein --- --- --- --- --- --- SPBC16A3.05c // |rae1||RNA export factor Rae1|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.04799337238712 1.56772012569854 1.13716076403181 1.66498219376905 -1.68437499434249 Max fold change below threshold 4 1.68437499434249 Max fold change below threshold AAAMAA No 4 0 AAAA 4 0 0 No No x = 1
1779612_at SPAC19A8.05c.S1 --- 1.68432163973131 --- --- --- --- 5.81487607955933 4.84906435012817 5.23601913452148 4.37842464447021 0.171387001872063 0.018554700538516 0.018554700538516 0.022705078125 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19A8.05c /GEN=vps27 /DEF=zinc finger protein --- --- --- --- --- --- SPAC19A8.05c // |vps27||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.16542348370543 -1.19917486337454 -1.68432163973131 -1.11055287044721 -1.32807494743647 Max fold change below threshold 4 1.68432163973131 Max fold change below threshold APPMPP No 4 0 APPP 1 3 0 No No 2 < x = 3
1774777_at YGR043C.S1 Hypothetical protein 1.68431583942804 4798.01550292969 5036.880859375 --- --- 5634 // nucleus // inferred from direct assay 4801 // transaldolase activity // inferred from sequence similarity 5958.8935546875 5563.2666015625 4032.76440429688 4114.8681640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR043C /GEN=BUD9 /DB_XREF=GI:6321480 /SEG=NC_001139:-580437,581438 /DEF=Hypothetical ORF /NOTE=Ygr043cp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: transaldolase activity [goid GO:0004801] [evidence ISS] [pmid 10592175]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003275 // YGR043C SGDID:S0003275, Chr VII from 581440-580439, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019376 // cdna:Genscan chromosome:SGD1:VII:580439:581440:-1 // ensembl // 11 // --- /// GENEFINDER00000021736 // cdna:GeneFinder chromosome:SGD1:VII:580439:581440:-1 // ensembl // 11 // --- /// YGR043C // cdna:known chromosome:SGD1:VII:580439:581440:-1 gene:YGR043C // ensembl // 11 // --- --- No cerevisiae_gene -1.68431583942804 -1.07111414596127 -1.1660711688809 -1.47762005346465 -1.44813717404847 Max fold change below threshold 4 1.68431583942804 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771137_at YLR360W.S1 Part of a Vps34p phosphatidylinositol 3-kinase complex that functions in carboxypeptidase Y (CPY) sorting; binds Vps30p and Vps34p to promote production of phosphatidylinositol 3-phosphate (PtdIns3P) which stimulates kinase activity 1.68413482014272 218.518013000488 357.215042114258 VPS38 45324 // late endosome to vacuole transport // inferred from genetic interaction /// 45324 // late endosome to vacuole transport // inferred from mutant phenotype --- --- 354.306030273438 226.657363891602 210.378662109375 360.124053955078 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR360W /GEN=VPS38 /DB_XREF=GI:6323392 /SEG=NC_001144:+846102,847421 /DEF=involved in vacuolar protein targeting /NOTE=Vps38p; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 8754838]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: late endosome to vacuole transport [goid GO:0045324] [evidence IGI,IMP] [pmid 9265642] --- --- --- --- --- --- S0004352 // VPS38 SGDID:S0004352, Chr XII from 846102-847421, Verified ORF // sgd // 11 // --- /// YLR360W // cdna:known chromosome:SGD1:XII:846102:847421:1 gene:YLR360W // ensembl // 11 // --- --- No cerevisiae_gene -1.26761962785599 -1.56317899489418 1.28833168244343 -1.68413482014272 1.01642089940482 Max fold change below threshold 4 1.68413482014272 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773250_at YBR129C.S1 Protein of unknown function, overproduction blocks cell cycle arrest in the presence of mating pheromone 1.68385719837091 618.196380615234 866.196380615234 OPY1 747 // conjugation with cellular fusion // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 865.630554199219 666.369567871094 570.023193359375 866.76220703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR129C /GEN=OPY1 /DB_XREF=GI:6319605 /SEG=NC_001134:-494309,495295 /DEF=Protein of unknown function, overproduction blocks cell cycle arrest in the presence of mating pheromone /NOTE=Opy1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IGI] [pmid 9383053] --- --- --- --- --- --- S0000333 // OPY1 SGDID:S0000333, Chr II from 495333-494347, reverse complement, Verified ORF // sgd // 11 // --- /// AF016262 // Saccharomyces cerevisiae overproduction induced pheromone resistant yeast 1 (OPY1) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000021244 // cdna:Genscan chromosome:SGD1:II:494347:495333:-1 // ensembl // 11 // --- /// GENEFINDER00000022130 // cdna:GeneFinder chromosome:SGD1:II:494347:495333:-1 // ensembl // 11 // --- /// YBR129C // cdna:known chromosome:SGD1:II:494347:495333:-1 gene:YBR129C // ensembl // 11 // --- --- No cerevisiae_gene -1.68385719837091 -1.29902473932704 1.2658176902774 -1.51858830357009 1.00130731618303 Max fold change below threshold 4 1.68385719837091 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770759_at YKR088C.S1 Integral membrane protein localized to vesicles along with the v-SNARE Tlg2p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.68332313808557 1637.91931152344 1132.564453125 --- --- 5737 // cytoplasm // inferred from direct assay --- 1044.46704101563 1517.6630859375 1758.17553710938 1220.66186523438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR088C /GEN=OMA1 /DB_XREF=GI:6322941 /SEG=NC_001143:-604046,605059 /DEF=Integral membrane protein localized to vesicles along with the v-SNARE Tlg2p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ykr088cp --- --- --- --- --- S0001796 // span:93-115,136-158,173-195,253-272,287-309 // numtm:5 S0001796 // TVP38 SGDID:S0001796, Chr XI from 605060-604047, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018490 // cdna:Genscan chromosome:SGD1:XI:604047:605027:-1 // ensembl // 11 // --- /// GENEFINDER00000023088 // cdna:GeneFinder chromosome:SGD1:XI:604047:605060:-1 // ensembl // 11 // --- /// YKR088C // cdna:known chromosome:SGD1:XI:604047:605060:-1 gene:YKR088C // ensembl // 11 // --- --- No cerevisiae_gene 1.38547433146718 1.45305024126156 1.41616958503199 1.68332313808557 1.16869352243745 Max fold change below threshold 4 1.68332313808557 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779072_at YIL002W-A.S1 Identified by expression profiling and mass spectrometry 1.68316751618896 868.732818603516 579.344543457031 --- --- --- --- 554.007934570313 804.977478027344 932.488159179688 604.68115234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL002W-A /GEN=CFD1 /DB_XREF=GI:33438816 /SEG=NC_001141:+350298,350507 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Yil002w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028835 // YIL002W-A SGDID:S0028835, Chr IX from 350298-350507, Uncharacterized ORF // sgd // 11 // --- /// YIL002W-A // cdna:known chromosome:SGD1:IX:350298:350507:1 gene:YIL002W-A // ensembl // 11 // --- GENEFINDER00000019003 // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene 1.27661783263078 1.45300712823126 -1.20062316396982 1.68316751618896 1.09146659210349 Max fold change below threshold 4 1.68316751618896 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779905_at YER065C.S1 Isocitrate lyase, catalyzes the formation of succinate and glyoxylate from isocitrate, a key reaction of the glyoxylate cycle; expression of ICL1 is induced by growth on ethanol and repressed by growth on glucose 1.68191654145972 6052.212890625 3930.6083984375 ICL1 6097 // glyoxylate cycle // traceable author statement --- 4451 // isocitrate lyase activity // inferred from mutant phenotype /// 4451 // isocitrate lyase activity // inferred from sequence similarity 4243.30029296875 7136.876953125 4967.548828125 3617.91650390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER065C /GEN=ICL1 /DB_XREF=GI:6320908 /SEG=NC_001137:-285239,286912 /DEF=Isocitrate lyase, catalyzes the formation of succinate and glyoxylate from isocitrate, a key reaction of the glyoxylate cycle; expression of ICL1 is induced by growth on ethanol and repressed by growth on glucose /NOTE=Icl1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: isocitrate lyase activity [goid GO:0004451] [evidence IMP,ISS] [pmid 1551398]; go_process: glyoxylate cycle [goid GO:0006097] [evidence TAS] [pmid 11092862] --- --- --- --- --- --- S0000867 // ICL1 SGDID:S0000867, Chr V from 286912-285239, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000016859 // cdna:Genscan chromosome:SGD1:V:285239:286912:-1 // ensembl // 10 // --- /// GENEFINDER00000019746 // cdna:GeneFinder chromosome:SGD1:V:285239:286912:-1 // ensembl // 10 // --- /// YER065C // cdna:known chromosome:SGD1:V:285239:286912:-1 gene:YER065C // ensembl // 10 // --- --- No cerevisiae_gene -1.43631383953865 1.68191654145972 -1.61829350376576 1.17068048102944 -1.17285744112316 Max fold change below threshold 4 1.68191654145972 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777966_at YPL096W.S1 Conserved peptide N-glycanase required for deglycosylation of misfolded glycoproteins during proteasome-dependent degradation, localizes to the cytoplasm and nucleus, interacts with the DNA repair protein Rad23p 1.68189153856416 535.431121826172 716.634796142578 PNG1 6515 // misfolded or incompletely synthesized protein catabolism // inferred from mutant phenotype /// 6517 // protein deglycosylation // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 224 // peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity // inferred from direct assay 656.376342773438 390.260803222656 680.601440429688 776.893249511719 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL096W /GEN=PNG1 /DB_XREF=GI:6325161 /SEG=NC_001148:+366922,368013 /DEF=de-N-glycosylation enzyme /NOTE=Png1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 10831608]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10831608]; go_function: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity [goid GO:0000224] [evidence IDA] [pmid 10831608]; go_process: misfolded or incompletely synthesized protein catabolism [goid GO:0006515] [evidence IMP] [pmid 10831608]; go_process: protein deglycosylation [goid GO:0006517] [evidence IDA] [pmid 10831608] --- --- --- --- --- --- S0006017 // PNG1 SGDID:S0006017, Chr XVI from 366924-368015, Verified ORF // sgd // 11 // --- /// GENSCAN00000017116 // cdna:Genscan chromosome:SGD1:XVI:366924:368015:1 // ensembl // 11 // --- /// YPL096W // cdna:known chromosome:SGD1:XVI:366924:368015:1 gene:YPL096W // ensembl // 11 // --- --- No cerevisiae_gene -1.37435093683439 -1.68189153856416 1.60280433361509 1.03690732903915 1.18360946134812 Max fold change below threshold 4 1.68189153856416 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772748_at YLR262C-A.S1 Similar to C. elegans protein 1.68177608768656 353.556503295898 259.798126220703 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 222.009918212891 333.742034912109 373.370971679688 297.586334228516 0.000244141003349796 0.000732421991415322 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR262C-A /GEN=YPT6 /DB_XREF=GI:6323292 /SEG=NC_001144:-669470,669664 /DEF=Similar to C. elegans protein /NOTE=Ylr262c-ap; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007246 // YLR262C-A SGDID:S0007246, Chr XII from 669664-669470, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018025 // cdna:Genscan chromosome:SGD1:XII:669470:669664:-1 // ensembl // 11 // --- /// GENEFINDER00000024865 // cdna:GeneFinder chromosome:SGD1:XII:669470:669664:-1 // ensembl // 11 // --- /// YLR262C-A // cdna:known chromosome:SGD1:XII:669470:669664:-1 gene:YLR262C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.66391338013678 1.50327533832104 -1.14005402970435 1.68177608768656 1.34041909759704 Max fold change below threshold 4 1.68177608768656 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777255_at YDL193W.S1 Protein required for cell viability 1.68170499015463 915.370361328125 1395.97924804688 --- --- 5635 // nuclear membrane // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 5811 // lipid particle // inferred from direct assay 4659 // prenyltransferase activity // inferred from sequence similarity 1437.00244140625 976.249328613281 854.491394042969 1354.9560546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL193W /GEN=SNF3 /DB_XREF=GI:6320008 /SEG=NC_001136:+114673,115800 /DEF=Protein required for cell viability /NOTE=Ydl193wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11086160]; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 14690591]; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 14690591]; go_function: prenyltransferase activity [goid GO:0004659] [evidence ISS] [pmid 14690591]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002352 // span:97-119 // numtm:1 S0002352 // YDL193W SGDID:S0002352, Chr IV from 114673-115800, Uncharacterized ORF // sgd // 10 // --- /// GENEFINDER00000023847 // cdna:GeneFinder chromosome:SGD1:IV:114673:115800:1 // ensembl // 10 // --- /// GENSCAN00000024959 // cdna:Genscan chromosome:SGD1:IV:114682:115800:1 // ensembl // 10 // --- /// YDL193W // cdna:known chromosome:SGD1:IV:114673:115800:1 gene:YDL193W // ensembl // 10 // --- --- No cerevisiae_gene -1.46263561258667 -1.47196253998704 1.04491729644194 -1.68170499015463 -1.0605528027532 Max fold change below threshold 4 1.68170499015463 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778692_at YBR163W.S1 Protein of unknown function, shows similarity to RNA-processing protein Pta1p 1.68120844381689 424.034362792969 477.993515014648 DEM1 --- 5739 // mitochondrion // inferred from direct assay --- 423.937530517578 452.723724365234 395.345001220703 532.049499511719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR163W /GEN=DEM1 /DB_XREF=GI:6319640 /SEG=NC_001134:+565680,567437 /DEF=Protein of unknown function, shows similarity to RNA-processing protein Pta1p /NOTE=Dem1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 0.270000010728836 --- S0000367 // DEM1 SGDID:S0000367, Chr II from 565718-567475, Verified ORF // sgd // 11 // --- /// GENSCAN00000021271 // cdna:Genscan chromosome:SGD1:II:565835:567475:1 // ensembl // 11 // --- /// YBR163W // cdna:known chromosome:SGD1:II:565718:567475:1 gene:YBR163W // ensembl // 11 // --- --- No cerevisiae_gene 1.68120844381689 1.06790197086941 1.41837234556028 -1.07232298172126 1.2550186317832 Max fold change below threshold 4 1.68120844381689 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776355_at YOR089C.S1 GTPase required for transport during endocytosis and for correct sorting of vacuolar hydrolases; localized in endocytic intermediates; detected in mitochondria; geranylgeranylation required for membrane association; mammalian Rab5 homolog 1.68106024725594 2218.19604492188 1329.86206054688 VPS21 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6897 // endocytosis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5770 // late endosome // inferred from mutant phenotype 3924 // GTPase activity // traceable author statement /// 3924 // GTPase activity // inferred from mutant phenotype /// 3924 // GTPase activity // inferred from sequence similarity 1348.22619628906 2169.94262695313 2266.44946289063 1311.49792480469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR089C /GEN=VPS21 /DB_XREF=GI:6324663 /SEG=NC_001147:-490197,490829 /DEF=Rab5-like GTPase involved in vacuolar protein sorting and endocytosis post vesicle internalization; geranylgeranylated; geranylgeranylation required for membrane association /NOTE=Vps21p; go_component: late endosome [goid GO:0005770] [evidence IMP] [pmid 11872141]; go_function: GTPase activity [goid GO:0003924] [evidence TAS] [pmid 12204334]; go_function: GTPase activity [goid GO:0003924] [evidence IMP,ISS] [pmid 8163546]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 8163546]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 8163546] --- --- --- --- --- --- S0005615 // VPS21 SGDID:S0005615, Chr XV from 490829-490197, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017528 // cdna:Genscan chromosome:SGD1:XV:490197:490829:-1 // ensembl // 11 // --- /// GENEFINDER00000022786 // cdna:GeneFinder chromosome:SGD1:XV:490197:490829:-1 // ensembl // 11 // --- /// YOR089C // cdna:known chromosome:SGD1:XV:490197:490829:-1 gene:YOR089C // ensembl // 11 // --- --- No cerevisiae_gene 1.42621358774989 1.60947965031818 1.11754105080016 1.68106024725594 -1.0280048262294 Max fold change below threshold 4 1.68106024725594 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770064_at SPCC550.14.S1 --- 1.68104769721139 --- --- --- --- 5.53866243362427 8.2955379486084 5.70864582061768 5.85236549377441 0.0805663987994194 0.018554700538516 0.219482004642487 0.0676269978284836 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC550.14 /DEF=RNA-binding protein --- --- --- --- --- --- SPCC550.14 // |||KH domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.62525111606948 1.49775113540909 1.68104769721139 1.03069033165146 1.05663877586143 Max fold change below threshold 4 1.68104769721139 Max fold change below threshold AAPPAA No 4 0 APAA 3 1 0 No No x = 1
1777452_at YDR031W.S1 Hypothetical protein 1.68085728742182 418.674728393555 289.189300537109 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 272.198150634766 457.526245117188 379.823211669922 306.180450439453 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR031W /GEN=RAD28 /DB_XREF=GI:6320234 /SEG=NC_001136:+503494,503847 /DEF=Hypothetical ORF /NOTE=Ydr031wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002438 // YDR031W SGDID:S0002438, Chr IV from 503494-503859, Uncharacterized ORF // sgd // 11 // --- /// YDR031W // cdna:known chromosome:SGD1:IV:503494:503859:1 gene:YDR031W // ensembl // 11 // --- --- No cerevisiae_gene -1.39010119367532 1.68085728742182 1.18599783012043 1.39539233012486 1.12484397754151 Max fold change below threshold 4 1.68085728742182 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770556_at YLL038C.S1 Protein of unknown function, contains an N-terminal epsin-like domain 1.68061914373872 58.0098819732666 104.501075744629 ENT4 147 // actin cortical patch assembly // inferred from sequence similarity /// 6897 // endocytosis // inferred from sequence similarity /// 7015 // actin filament organization // inferred from sequence similarity 30479 // actin cortical patch // inferred from physical interaction 30276 // clathrin binding // inferred from sequence similarity 77.9678649902344 47.4030723571777 68.6166915893555 131.034286499023 0.00415039015933871 0.018554700538516 0.0805663987994194 0.00195312988944352 P P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL038C /GEN=ENT4 /DB_XREF=GI:6322990 /SEG=NC_001144:-65774,66517 /DEF=Protein of unknown function, contains an N-terminal epsin-like domain /NOTE=Ent4p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IPI] [pmid 10652251]; go_function: clathrin binding [goid GO:0030276] [evidence ISS] [pmid 10449404]; go_process: actin cortical patch assembly [goid GO:0000147] [evidence ISS] [pmid 10449404]; go_process: actin filament organization [goid GO:0007015] [evidence ISS] [pmid 10449404]; go_process: endocytosis [goid GO:0006897] [evidence ISS] [pmid 10449404] --- --- --- --- --- --- S0003961 // ENT4 SGDID:S0003961, Chr XII from 66517-65774, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017680 // cdna:Genscan chromosome:SGD1:XII:65774:66517:-1 // ensembl // 11 // --- /// YLL038C // cdna:known chromosome:SGD1:XII:65774:66517:-1 gene:YLL038C // ensembl // 11 // --- --- No cerevisiae_gene 1.03291336755059 -1.6447850553389 1.54152443723724 -1.13628132141436 1.68061914373872 Max fold change below threshold 4 1.68061914373872 Max fold change below threshold PPPPAP No 2 0 PPAP 1 3 0 No No 2 < x = 3
1771218_at YDR349C.S1 Putative GPI-anchored aspartic protease, located in the cytoplasm and endoplasmic reticulum 1.68029602343572 1667.21246337891 1145.91119384766 YPS7 --- 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay 4190 // aspartic-type endopeptidase activity // inferred from sequence similarity 1116.37658691406 1458.58178710938 1875.84313964844 1175.44580078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR349C /GEN=YPS7 /DB_XREF=GI:6320556 /SEG=NC_001136:-1172376,1174166 /DEF=Putative GPI-anchored aspartic protease, located in the cytoplasm and endoplasmic reticulum /NOTE=Yps7p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: aspartic-type endopeptidase activity [goid GO:0004190] [evidence ISS] [pmid 10191273]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002757 // YPS7 SGDID:S0002757, Chr IV from 1174168-1172378, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023699 // cdna:GeneFinder chromosome:SGD1:IV:1172378:1174168:-1 // ensembl // 11 // --- /// GENSCAN00000025375 // cdna:Genscan chromosome:SGD1:IV:1172378:1174168:-1 // ensembl // 11 // --- /// YDR349C // cdna:known chromosome:SGD1:IV:1172378:1174168:-1 gene:YDR349C // ensembl // 11 // --- --- No cerevisiae_gene 1.2143104965722 1.30653204680801 -1.1074866139522 1.68029602343572 1.05291154845021 Max fold change below threshold 4 1.68029602343572 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778748_at YOR316C.S1 Vacuolar transporter that mediates zinc transport into the vacuole; overexpression confers resistance to cobalt and rhodium 1.68007482120537 1228.880859375 2032.21319580078 COT1 6824 // cobalt ion transport // inferred from mutant phenotype /// 6829 // zinc ion transport // inferred from genetic interaction /// 6882 // zinc ion homeostasis // inferred from mutant phenotype 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 5385 // zinc ion transporter activity // inferred from genetic interaction /// 15082 // di-, tri-valent inorganic cation transporter activity // inferred from sequence similarity /// 15087 // cobalt ion transporter activity // inferred from mutant phenotype 1996.01892089844 1269.70812988281 1188.05358886719 2068.40747070313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR316C /GEN=COT1 /DB_XREF=GI:6324892 /SEG=NC_001147:-906231,907550 /DEF=Vacuolar transporter that mediates zinc transport into the vacuole; overexpression confers resistance to cobalt and rhodium /NOTE=Cot1p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 9712830]; go_function: cobalt ion transporter activity [goid GO:0015087] [evidence IMP] [pmid 1508175]; go_function: di-, tri-valent inorganic cation transporter activity [goid GO:0015082] [evidence ISS] [pmid 9075641]; go_function: zinc ion transporter activity [goid GO:0005385] [evidence IGI] [pmid 8058041]; go_process: cobalt ion transport [goid GO:0006824] [evidence IMP] [pmid 1508175]; go_process: zinc ion homeostasis [goid GO:0006882] [evidence IMP] [pmid 10856230]; go_process: zinc ion transport [goid GO:0006829] [evidence IGI] [pmid 8058041] --- --- --- --- --- S0005843 // span:13-30,35-57,78-100,115-134,243-265,275-297 // numtm:6 S0005843 // COT1 SGDID:S0005843, Chr XV from 907550-906231, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017770 // cdna:Genscan chromosome:SGD1:XV:906231:907550:-1 // ensembl // 11 // --- /// GENEFINDER00000022895 // cdna:GeneFinder chromosome:SGD1:XV:906231:907424:-1 // ensembl // 11 // --- /// YOR316C // cdna:known chromosome:SGD1:XV:906231:907550:-1 gene:YOR316C // ensembl // 11 // --- --- No cerevisiae_gene -1.41400769293298 -1.57202972393558 -1.40037482327655 -1.68007482120537 1.03626646473477 Max fold change below threshold 4 1.68007482120537 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773842_at YMR016C.S1 Nuclear protein that plays a regulatory role in the cyclic AMP (cAMP)-dependent protein kinase (PKA) signal transduction pathway; negatively regulates pseudohyphal differentiation; homologous to several transcription factors 1.67999575214271 305.917617797852 273.985206604004 SOK2 7124 // pseudohyphal growth // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 3700 // transcription factor activity // inferred from sequence similarity 247.424209594727 275.875793457031 335.959442138672 300.546203613281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR016C /GEN=SOK2 /DB_XREF=GI:6323658 /SEG=NC_001145:-303235,305592 /DEF=Protein that can when overexpressed suppress mutants of cAMP-dependent protein kinase /NOTE=Sok2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: transcription factor activity [goid GO:0003700] [evidence ISS] [pmid 8524252]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 11046133] --- --- --- --- --- --- S0004618 // SOK2 SGDID:S0004618, Chr XIII from 305592-303235, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018730 // cdna:Genscan chromosome:SGD1:XIII:303235:305592:-1 // ensembl // 11 // --- /// GENEFINDER00000022100 // cdna:GeneFinder chromosome:SGD1:XIII:303235:305592:-1 // ensembl // 11 // --- /// YMR016C // cdna:known chromosome:SGD1:XIII:303235:305592:-1 gene:YMR016C // ensembl // 11 // --- --- No cerevisiae_gene -1.67999575214271 1.11499110741389 -1.11052233239651 1.35782768666398 1.21470006554964 Max fold change below threshold 4 1.67999575214271 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773010_at YPL005W.S1 Peripheral mitochondrial inner membrane protein, located on the matrix face of the membrane; stabilizes the bicistronic AAP1-ATP6 mRNA encoding subunits 6 and 8 of the ATP synthase complex 1.67992372729725 521.488052368164 384.92594909668 AEP3 16071 // mRNA metabolism // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5743 // mitochondrial inner membrane // inferred from direct assay /// 19898 // extrinsic to membrane // inferred from direct assay --- 370.196990966797 488.018829345703 554.957275390625 399.654907226563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL005W /GEN=AEP3 /DB_XREF=GI:6325252 /SEG=NC_001148:+548481,550301 /DEF=Peripheral mitochondrial inner membrane protein, located on the matrix face of the membrane; stabilizes the bicistronic AAP1-ATP6 mRNA encoding subunits 6 and 8 of the ATP synthase complex /NOTE=Aep3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: extrinsic to membrane [goid GO:0019898] [evidence IDA] [pmid 14742425]; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 14742425]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mRNA metabolism [goid GO:0016071] [evidence IMP] [pmid 14742425] --- --- --- --- --- --- S0005926 // AEP3 SGDID:S0005926, Chr XVI from 548483-550303, Verified ORF // sgd // 10 // --- /// GENSCAN00000017180 // cdna:Genscan chromosome:SGD1:XVI:548798:550303:1 // ensembl // 10 // --- /// YPL005W // cdna:known chromosome:SGD1:XVI:548483:550303:1 gene:YPL005W // ensembl // 10 // --- --- No cerevisiae_gene -1.67992372729725 1.31826795261411 -1.00872783915257 1.49908640246187 1.07957362425565 Max fold change below threshold 4 1.67992372729725 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774276_at YNL209W.S1 Cytoplasmic ATPase that is a ribosome-associated molecular chaperone; may be involved in the folding of newly-synthesized polypeptide chains; member of the heat shock protein 70 (HSP70) family; homolog of SSB1 /// Cytoplasmic ATPase that is a ribosome-associated molecular chaperone; may be involved in the folding of newly-synthesized polypeptide chains; member of the heat shock protein 70 (HSP70) family; interacts with the phosphatase subunit Reg1p 1.67968863093433 2841.25903320313 3825.70593261719 SSB2 /// SSB1 6412 // protein biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5844 // polysome // traceable author statement /// 5625 // soluble fraction // inferred from direct assay 16887 // ATPase activity // inferred from direct assay /// 51082 // unfolded protein binding // inferred from sequence similarity /// 51082 // unfolded protein binding // traceable author statement 3951.806640625 2829.41845703125 2853.099609375 3699.60522460938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL209W /GEN=SSB2 /DB_XREF=GI:6324120 /SEG=NC_001146:+252058,253899 /DEF=stress-seventy subfamily B /NOTE=Ssb2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: polysome [goid GO:0005844] [evidence TAS] [pmid 8336673]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 9860955]; go_function: chaperone activity [goid GO:0003754] [evidence TAS] [pmid 8336673]; go_function: chaperone activity [goid GO:0003754] [evidence ISS] [pmid 9860955]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 8336673] --- --- --- --- --- --- S0005153 // SSB2 SGDID:S0005153, Chr XIV from 252058-253899, Verified ORF // sgd // 11 // --- /// GENSCAN00000019873 // cdna:Genscan chromosome:SGD1:XIV:252058:253899:1 // ensembl // 11 // --- /// GENEFINDER00000020539 // cdna:GeneFinder chromosome:SGD1:XIV:252058:253899:1 // ensembl // 11 // --- /// YNL209W // cdna:known chromosome:SGD1:XIV:252058:253899:1 gene:YNL209W // ensembl // 11 // --- --- No cerevisiae_gene 1.28006128526065 -1.39668511414583 -1.67968863093433 -1.38509241936025 -1.06816981831954 Max fold change below threshold 4 1.67968863093433 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778332_at YOR320C.S1 N-acetylglucosaminyltransferase capable of modification of N-linked glycans in the Golgi apparatus 1.67884637696481 456.386413574219 361.449676513672 GNT1 6487 // N-linked glycosylation // inferred from mutant phenotype 5797 // Golgi medial cisterna // inferred from direct assay 8375 // acetylglucosaminyltransferase activity // inferred from direct assay 340.628204345703 474.974334716797 437.798492431641 382.271148681641 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR320C /GEN=GNT1 /DB_XREF=GI:6324896 /SEG=NC_001147:-913614,915089 /DEF=N-acetylglucosaminyltransferase transferase capable of modification of N-linked glycans in the Golgi apparatus /NOTE=Gnt1p; go_component: Golgi medial cisterna [goid GO:0005797] [evidence IDA] [pmid 12651885]; go_function: acetylglucosaminyltransferase activity [goid GO:0008375] [evidence IDA] [pmid 12651885]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IMP] [pmid 12651885] --- --- --- --- --- S0005847 // span:12-34 // numtm:1 S0005847 // GNT1 SGDID:S0005847, Chr XV from 915089-913614, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017774 // cdna:Genscan chromosome:SGD1:XV:913614:915089:-1 // ensembl // 11 // --- /// GENEFINDER00000022554 // cdna:GeneFinder chromosome:SGD1:XV:913614:915089:-1 // ensembl // 11 // --- /// YOR320C // cdna:known chromosome:SGD1:XV:913614:915089:-1 gene:YOR320C // ensembl // 11 // --- --- No cerevisiae_gene 1.67884637696481 1.39440694768407 1.40807376650789 1.28526788694021 1.12225336541326 Max fold change below threshold 4 1.67884637696481 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772870_at YNR012W.S1 Uridine/cytidine kinase, component of the pyrimidine ribonucleotide salvage pathway that converts uridine into UMP and cytidine into CMP; involved in the pyrimidine deoxyribonucleotide salvage pathway, converting deoxycytidine into dCMP 1.67864493447706 543.236389160156 820.277404785156 URK1 8655 // pyrimidine salvage // inferred from genetic interaction /// 8655 // pyrimidine salvage // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4849 // uridine kinase activity // inferred from mutant phenotype 770.053466796875 458.735168457031 627.737609863281 870.501342773438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR012W /GEN=URK1 /DB_XREF=GI:6324339 /SEG=NC_001146:+647431,648936 /DEF=converts ATP and uridine to ADP and UMP /NOTE=Urk1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: uridine kinase activity [goid GO:0004849] [evidence IMP] [pmid 10501935]; go_process: pyrimidine salvage [goid GO:0008655] [evidence IGI,IMP] [pmid 11872485] --- --- --- --- --- --- S0005295 // URK1 SGDID:S0005295, Chr XIV from 647432-648937, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020513 // cdna:GeneFinder chromosome:SGD1:XIV:647432:648937:1 // ensembl // 11 // --- /// GENSCAN00000020047 // cdna:Genscan chromosome:SGD1:XIV:647528:648937:1 // ensembl // 11 // --- /// YNR012W // cdna:known chromosome:SGD1:XIV:647432:648937:1 gene:YNR012W // ensembl // 11 // --- --- No cerevisiae_gene 1.06634441284928 -1.67864493447706 1.14698940027691 -1.22671233123118 1.13044272937876 Max fold change below threshold 4 1.67864493447706 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769959_at YDL085W.S1 Mitochondrial external NADH dehydrogenase, catalyzes the oxidation of cytosolic NADH; Nde1p and Nde2p are involved in providing the cytosolic NADH to the mitochondrial respiratory chain 1.67864265359649 2567.63500976563 2057.25659179688 NDE2 6116 // NADH oxidation // inferred from direct assay /// 19655 // ethanol fermentation // inferred from genetic interaction /// 19655 // ethanol fermentation // inferred from sequence similarity /// 19655 // ethanol fermentation // inferred from mutant phenotype 5739 // mitochondrion // inferred from sequence similarity /// 5739 // mitochondrion // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from direct assay 3954 // NADH dehydrogenase activity // inferred from sequence similarity 2032.47827148438 2635.00756835938 2500.26245117188 2082.03491210938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL085W /GEN=NDE2 /DB_XREF=GI:6320118 /SEG=NC_001136:+303211,304848 /DEF=Nde2p /NOTE=go_component: mitochondrion [goid GO:0005739] [evidence IMP,ISS] [pmid 9733747]; go_function: NADH dehydrogenase activity [goid GO:0003954] [evidence ISS] [pmid 9696750]; go_process: NADH oxidation [goid GO:0006116] [evidence IDA] [pmid 12032156]; go_process: ethanol fermentation [goid GO:0019655] [evidence IGI,IMP,ISS] [pmid 9733747] --- --- --- --- --- --- S0002243 // NDE2 SGDID:S0002243, Chr IV from 303211-304848, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023919 // cdna:GeneFinder chromosome:SGD1:IV:303265:304848:1 // ensembl // 11 // --- /// GENSCAN00000025038 // cdna:Genscan chromosome:SGD1:IV:303265:304848:1 // ensembl // 11 // --- /// YDL085W // cdna:known chromosome:SGD1:IV:303211:304848:1 gene:YDL085W // ensembl // 11 // --- --- No cerevisiae_gene -1.67864265359649 1.29645054775171 1.34916242353932 1.23015457840337 1.02438237166925 Max fold change below threshold 4 1.67864265359649 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774288_at YDR054C.S1 Ubiquitin-conjugating enzyme or E2; together with Skp1p, Rbx1p, Cdc53p, and an F-box protein, forms a ubiquitin-protein ligase called the SCF complex which regulates cell cycle progression by targeting key substrates for degradation 1.67856976903163 849.818145751953 593.359527587891 CDC34 82 // G1/S transition of mitotic cell cycle // traceable author statement /// 86 // G2/M transition of mitotic cell cycle // inferred from physical interaction /// 16567 // protein ubiquitination // inferred from genetic interaction /// 16567 // protein ubiquitination // inferred from physical interaction /// 31146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from direct assay 152 // nuclear ubiquitin ligase complex // traceable author statement /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 19005 // SCF ubiquitin ligase complex // inferred from mutant phenotype 4840 // ubiquitin conjugating enzyme activity // traceable author statement /// 4842 // ubiquitin-protein ligase activity // traceable author statement 546.42138671875 782.429870605469 917.206420898438 640.297668457031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR054C /GEN=CDC34 /DB_XREF=GI:6320259 /SEG=NC_001136:-561436,562323 /DEF=Ubiquitin-conjugating enzyme or E2; together with Skp1p, Rbx1p, Cdc53p, and an F-box protein, forms a ubiquitin-protein ligase called the SCF complex which regulates cell cycle progression by targeting key substrates for degradation /NOTE=Cdc34p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11080155]; go_component: nuclear ubiquitin ligase complex [goid GO:0000152] [evidence TAS] [pmid 9346231]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11080155]; go_function: ubiquitin conjugating enzyme activity [goid GO:0004840] [evidence TAS] [pmid 9346231]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 10581972]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence TAS] [pmid 9346231]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence IPI] [pmid 10409741]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 9346231] --- --- --- --- --- --- S0002461 // CDC34 SGDID:S0002461, Chr IV from 562324-561437, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023888 // cdna:GeneFinder chromosome:SGD1:IV:561437:562324:-1 // ensembl // 11 // --- /// GENSCAN00000025138 // cdna:Genscan chromosome:SGD1:IV:561437:562324:-1 // ensembl // 11 // --- /// YDR054C // cdna:known chromosome:SGD1:IV:561437:562324:-1 gene:YDR054C // ensembl // 11 // --- --- No cerevisiae_gene 1.08229672201317 1.43191662995467 1.1926300922819 1.67856976903163 1.17180199022225 Max fold change below threshold 4 1.67856976903163 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778968_at YNL176C.S1 Hypothetical protein 1.67823100338713 747.160583496094 789.049224853516 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 765.785339355469 653.434326171875 840.886840820313 812.313110351563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL176C /GEN=MRPL22 /DB_XREF=GI:6324153 /SEG=NC_001146:-305070,306980 /DEF=Hypothetical ORF /NOTE=Ynl176cp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005120 // span:458-480 // numtm:1 S0005120 // YNL176C SGDID:S0005120, Chr XIV from 306980-305070, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019899 // cdna:Genscan chromosome:SGD1:XIV:305070:306980:-1 // ensembl // 11 // --- /// GENEFINDER00000020605 // cdna:GeneFinder chromosome:SGD1:XIV:305070:306593:-1 // ensembl // 11 // --- /// YNL176C // cdna:known chromosome:SGD1:XIV:305070:306980:-1 gene:YNL176C // ensembl // 11 // --- --- No cerevisiae_gene -1.67823100338713 -1.1719392579845 -1.29586512025814 1.09807121866299 1.06075824203589 Max fold change below threshold 4 1.67823100338713 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770890_at YML008C.S1 Delta(24)-sterol C-methyltransferase, converts zymosterol to fecosterol in the ergosterol biosynthetic pathway by methylating position C-24 1.67814562498036 3678.67834472656 5365.650390625 ERG6 6696 // ergosterol biosynthesis // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5783 // endoplasmic reticulum // traceable author statement /// 5811 // lipid particle // inferred from direct assay 3838 // sterol 24-C-methyltransferase activity // traceable author statement 5959.76416015625 3551.39868164063 3805.9580078125 4771.53662109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML008C /GEN=ERG6 /DB_XREF=GI:6323635 /SEG=NC_001145:-251839,252990 /DEF=Delta(24)-sterol C-methyltransferase, converts zymosterol to fecosterol in the ergosterol biosynthetic pathway by methylating position C-24 /NOTE=Erg6p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS]; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 10515935]; go_function: sterol 24-C-methyltransferase activity [goid GO:0003838] [evidence TAS]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence TAS] --- --- --- --- --- --- S0004467 // ERG6 SGDID:S0004467, Chr XIII from 252990-251839, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018711 // cdna:Genscan chromosome:SGD1:XIII:251839:252990:-1 // ensembl // 11 // --- /// GENEFINDER00000022066 // cdna:GeneFinder chromosome:SGD1:XIII:251839:252990:-1 // ensembl // 11 // --- /// YML008C // cdna:known chromosome:SGD1:XIII:251839:252990:-1 gene:YML008C // ensembl // 11 // --- --- No cerevisiae_gene -1.35928234738862 -1.67814562498036 -1.21160821732955 -1.56590381394714 -1.2490240845705 Max fold change below threshold 4 1.67814562498036 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779732_at YPL071C.S1 Hypothetical protein 1.67806339420462 456.663040161133 681.886840820313 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 681.879943847656 444.136169433594 469.189910888672 681.893737792969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL071C /GEN=UBP16 /DB_XREF=GI:6325186 /SEG=NC_001148:-420043,420513 /DEF=Hypothetical ORF /NOTE=Ypl071cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005992 // YPL071C SGDID:S0005992, Chr XVI from 420515-420045, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YPL071C // cdna:known chromosome:SGD1:XVI:420045:420515:-1 gene:YPL071C // ensembl // 11 // --- --- No cerevisiae_gene -1.67806339420462 -1.53529478294294 -1.15590856379932 -1.45331331305939 1.00002022928734 Max fold change below threshold 4 1.67806339420462 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778930_at YOR289W.S1 Hypothetical protein 1.67806019439934 1233.57159423828 812.962371826172 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 784.574462890625 1212.54162597656 1254.6015625 841.350280761719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR289W /GEN=MPD1 /DB_XREF=GI:6324863 /SEG=NC_001147:+853354,854109 /DEF=Hypothetical ORF /NOTE=Yor289wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005815 // YOR289W SGDID:S0005815, Chr XV from 853354-854109, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000017735 // cdna:Genscan chromosome:SGD1:XV:853354:854109:1 // ensembl // 10 // --- /// YOR289W // cdna:known chromosome:SGD1:XV:853354:854109:1 gene:YOR289W // ensembl // 10 // --- --- No cerevisiae_gene -1.67806019439934 1.54547679452779 1.3364910939916 1.5990853919431 1.07236511071481 Max fold change below threshold 4 1.67806019439934 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777022_at YOR212W.S1 G protein beta subunit, forms a dimer with Ste18p to activate the mating signaling pathway, forms a heterotrimer with Gpa1p and Ste18p to dampen signaling; may recruit Rho1p to the polarized growth site during mating; contains WD40 repeats 1.677871667247 81.6111106872559 126.894832611084 STE4 750 // signal transduction during conjugation with cellular fusion // inferred from genetic interaction /// 750 // signal transduction during conjugation with cellular fusion // inferred from physical interaction /// 750 // signal transduction during conjugation with cellular fusion // traceable author statement 5834 // heterotrimeric G-protein complex // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay /// 5937 // mating projection // inferred from direct assay 3924 // GTPase activity // traceable author statement 126.209419250488 75.2199478149414 88.0022735595703 127.58024597168 0.000244141003349796 0.0239257998764515 0.00805663969367743 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR212W /GEN=STE4 /DB_XREF=GI:6324786 /SEG=NC_001147:+742910,744181 /DEF=beta subunit of G protein coupled to mating factor receptor /NOTE=Ste4p; go_component: heterotrimeric G-protein complex [goid GO:0005834] [evidence IDA] [pmid 8995254]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 8995254]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 11073983]; go_function: GTPase activity [goid GO:0003924] [evidence TAS]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence IGI,IPI,TAS] [pmid 10087263] --- --- --- --- --- --- S0005738 // STE4 SGDID:S0005738, Chr XV from 742910-744181, Verified ORF // sgd // 10 // --- /// GENSCAN00000017627 // cdna:Genscan chromosome:SGD1:XV:742910:744181:1 // ensembl // 10 // --- /// GENEFINDER00000022627 // cdna:GeneFinder chromosome:SGD1:XV:743111:744181:1 // ensembl // 10 // --- /// YOR212W // cdna:known chromosome:SGD1:XV:742910:744181:1 gene:YOR212W // ensembl // 10 // --- --- No cerevisiae_gene -1.16856643976103 -1.677871667247 1.53761932658269 -1.43416089318482 1.0108615246733 Max fold change below threshold 4 1.677871667247 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1772373_at YLL039C.S1 Ubiquitin, becomes conjugated to proteins, marking them for selective degradation via the ubiquitin-26S proteasome system; essential for the cellular stress response 1.6776369743764 6293.96435546875 4044.81823730469 UBI4 209 // protein polyubiquitination // traceable author statement /// 6513 // protein monoubiquitination // traceable author statement /// 6950 // response to stress // traceable author statement /// 16567 // protein ubiquitination // inferred from mutant phenotype /// 16579 // protein deubiquitination // traceable author statement /// 30437 // sporulation (sensu Fungi) // traceable author statement 5737 // cytoplasm // inferred from curator 31386 // protein tag // inferred from sequence similarity /// 43008 // ATP-dependent protein binding // traceable author statement 4401.70751953125 7384.46728515625 5203.46142578125 3687.92895507813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL039C /GEN=UBI4 /DB_XREF=GI:6322989 /SEG=NC_001144:-64061,65206 /DEF=Ubiquitin, becomes conjugated to proteins, marking them for selective degradation via the ubiquitin-26S proteasome system; essential for the cellular stress response /NOTE=Ubi4p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 8982460]; go_function: ATP-dependent protein binding [goid GO:0043008] [evidence TAS] [pmid 8982460]; go_process: protein deubiquitination [goid GO:0016579] [evidence TAS] [pmid 8982460]; go_process: protein monoubiquitination [goid GO:0006513] [evidence TAS] [pmid 8982460]; go_process: protein polyubiquitination [goid GO:0000209] [evidence TAS] [pmid 8982460]; go_process: response to stress [goid GO:0006950] [evidence TAS] [pmid 8982460]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence TAS] [pmid 8982460] --- --- --- --- --- --- S0003962 // UBI4 SGDID:S0003962, Chr XII from 65206-64061, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017678 // cdna:Genscan chromosome:SGD1:XII:64061:65206:-1 // ensembl // 11 // --- /// GENEFINDER00000024692 // cdna:GeneFinder chromosome:SGD1:XII:64061:65206:-1 // ensembl // 11 // --- /// YLL039C // cdna:known chromosome:SGD1:XII:64061:65206:-1 gene:YLL039C // ensembl // 11 // --- --- No cerevisiae_gene -1.08005708500227 1.6776369743764 -1.22135669854359 1.18214611095636 -1.19354455390749 Max fold change below threshold 4 1.6776369743764 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771065_at YER093C-A.S1 Hypothetical protein 1.67699705348694 352.157684326172 495.255249023438 --- --- --- --- 430.237426757813 368.490936279297 335.824432373047 560.273071289063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER093C-A /GEN=TSC11 /DB_XREF=GI:6320940 /SEG=NC_001137:-347908,348396 /DEF=Hypothetical ORF /NOTE=Yer093c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002960 // span:20-37,66-88 // numtm:2 S0002960 // YER093C-A SGDID:S0002960, Chr V from 348396-348273,348197-347908, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YER093C-A // cdna:known chromosome:SGD1:V:347908:348396:-1 gene:YER093C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.06398558095392 -1.16756583242448 1.67699705348694 -1.28113795568003 1.30224159137241 Max fold change below threshold 4 1.67699705348694 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773272_at YDR341C.S1 Cytoplasmic arginyl-tRNA synthetase 1.67681215739815 2565.96850585938 2659.10327148438 --- 6412 // protein biosynthesis // inferred from direct assay 5737 // cytoplasm // inferred from curator /// 5739 // mitochondrion // inferred from direct assay 4814 // arginine-tRNA ligase activity // inferred from direct assay 2692.67626953125 2539.94482421875 2591.9921875 2625.5302734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR341C /GEN=MRPS28 /DB_XREF=GI:6320548 /SEG=NC_001136:-1151793,1153616 /DEF=Cytoplasmic arginyl-tRNA synthetase /NOTE=Ydr341cp; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 9622124]; go_function: arginine-tRNA ligase activity [goid GO:0004814] [evidence IDA] [pmid 9622124]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 9622124] --- --- --- --- scop // a.4.5.LysR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; LysR-like transcriptional regulators // 3.59999990463257 --- S0002749 // YDR341C SGDID:S0002749, Chr IV from 1153618-1151795, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023952 // cdna:GeneFinder chromosome:SGD1:IV:1151795:1153618:-1 // ensembl // 11 // --- /// GENSCAN00000025368 // cdna:Genscan chromosome:SGD1:IV:1151795:1153618:-1 // ensembl // 11 // --- /// YDR341C // cdna:known chromosome:SGD1:IV:1151795:1153618:-1 gene:YDR341C // ensembl // 11 // --- --- No cerevisiae_gene 1.67681215739815 -1.06013179650841 -1.18853129792051 -1.03884428453018 -1.0255742608543 Max fold change below threshold 4 1.67681215739815 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770710_at YLL033W.S1 --- 1.67681069263811 83.5892143249512 131.324459075928 --- 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype --- --- 125.549140930176 92.3046569824219 74.8737716674805 137.09977722168 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL033W /GEN=RIX7 /DB_XREF=GI:6322995 /SEG=NC_001144:+73408,74100 /DEF=Yll033wp /NOTE=go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 12432101] --- --- --- --- --- --- S0003956 // YLL033W SGDID:S0003956, Chr XII from 73408-74100, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017688 // cdna:Genscan chromosome:SGD1:XII:73408:74100:1 // ensembl // 11 // --- /// YLL033W // cdna:known chromosome:SGD1:XII:73408:74100:1 gene:YLL033W // ensembl // 11 // --- --- No cerevisiae_gene -1.02453514827888 -1.36016041914424 1.66143414031267 -1.67681069263811 1.09200091857202 Max fold change below threshold 4 1.67681069263811 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771076_at YGL068W.S1 Protein associated with the mitochondrial nucleoid; putative mitochondrial ribosomal protein with similarity to E. coli L7/L12 ribosomal protein; required for normal respiratory growth 1.67643519082706 584.936294555664 739.887115478516 MNP1 9060 // aerobic respiration // inferred from mutant phenotype /// 43037 // translation // inferred from sequence similarity 5739 // mitochondrion // inferred from direct assay /// 5761 // mitochondrial ribosome // inferred from sequence similarity 3735 // structural constituent of ribosome // inferred from sequence similarity 681.649719238281 481.996307373047 687.876281738281 798.12451171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL068W /GEN=RPB9 /DB_XREF=GI:6321369 /SEG=NC_001139:+375088,375672 /DEF=Protein required for cell viability /NOTE=Ygl068wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003036 // MNP1 SGDID:S0003036, Chr VII from 375090-375674, Verified ORF // sgd // 11 // --- /// GENSCAN00000019296 // cdna:Genscan chromosome:SGD1:VII:375090:375674:1 // ensembl // 11 // --- /// GENEFINDER00000021436 // cdna:GeneFinder chromosome:SGD1:VII:375132:375674:1 // ensembl // 9 // --- /// YGL068W // cdna:known chromosome:SGD1:VII:375090:375674:1 gene:YGL068W // ensembl // 11 // --- YGL069C // ensembl // 10 // Negative Strand Matching Probes No cerevisiae_gene 1.67643519082706 -1.41422187019103 1.26679291259456 1.00913454861679 1.17087191440587 Max fold change below threshold 4 1.67643519082706 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769742_at YDL125C.S1 Adenosine 5'-monophosphoramidase; interacts physically and genetically with Kin28p, a CDK and TFIIK subunit, and genetically with CAK1; member of the histidine triad (HIT) superfamily of nucleotide-binding proteins and similar to Hint 1.67632331768412 4624.62963867188 3116.201171875 HNT1 9117 // nucleotide metabolism // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 166 // nucleotide binding // inferred from sequence similarity /// 16787 // hydrolase activity // inferred from direct assay 3250.69091796875 5449.208984375 3800.05029296875 2981.71142578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL125C /GEN=HNT1 /DB_XREF=GI:6320078 /SEG=NC_001136:-239019,239606 /DEF=Adenosine 5'-monophosphoramidase; interacts physically and genetically with Kin28p, a CDK and TFIIK subunit, and genetically with CAK1; member of the histidine triad (HIT) superfamily of nucleotide-binding proteins and similar to Hint /NOTE=Hnt1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: hydrolase activity [goid GO:0016787] [evidence IDA] [pmid 11805111]; go_function: nucleotide binding [goid GO:0000166] [evidence ISS] [pmid 9164465]; go_process: nucleotide metabolism [goid GO:0009117] [evidence IDA] [pmid 11805111] --- --- --- --- --- --- S0002283 // HNT1 SGDID:S0002283, Chr IV from 239606-239510,239398-239019, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YDL125C // cdna:known chromosome:SGD1:IV:239019:239606:-1 gene:YDL125C // ensembl // 11 // --- GENEFINDER00000023812 // ensembl // 3 // Cross Hyb Matching Probes No cerevisiae_gene -1.07156314368047 1.67632331768412 1.00634210125101 1.16899772659508 -1.09020976673389 Max fold change below threshold 4 1.67632331768412 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771040_at YLR189C.S1 UDP-glucose:sterol glucosyltransferase, conserved enzyme involved in synthesis of sterol glucoside membrane lipids, involved in autophagy 1.67587745049867 1579.09417724609 1619.26129150391 ATG26 16125 // sterol metabolism // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 16906 // sterol 3-beta-glucosyltransferase activity // inferred from direct assay 1640.3984375 1517.42333984375 1640.76501464844 1598.12414550781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR189C /GEN=ATG26 /DB_XREF=GI:6323218 /SEG=NC_001144:-530799,534395 /DEF=Udp-glycosyltransferase /NOTE=Atg26p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: sterol 3-beta-glucosyltransferase activity [goid GO:0016906] [evidence IDA] [pmid 10224056]; go_process: sterol metabolism [goid GO:0016125] [evidence IMP] [pmid 10224056] --- --- --- --- --- --- S0004179 // ATG26 SGDID:S0004179, Chr XII from 534395-530799, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017967 // cdna:Genscan chromosome:SGD1:XII:530799:534395:-1 // ensembl // 11 // --- /// GENEFINDER00000024579 // cdna:GeneFinder chromosome:SGD1:XII:530799:533675:-1 // ensembl // 11 // --- /// YLR189C // cdna:known chromosome:SGD1:XII:530799:534395:-1 gene:YLR189C // ensembl // 11 // --- --- No cerevisiae_gene -1.67587745049867 -1.08104204965564 1.05474468795691 1.00022346835992 -1.02645244558191 Max fold change below threshold 4 1.67587745049867 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779175_at YOR091W.S1 Hypothetical protein 1.67581774034805 549.715270996094 847.666687011719 --- --- 5737 // cytoplasm // inferred from direct assay --- 810.406188964844 483.588500976563 615.842041015625 884.927185058594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR091W /GEN=PTC5 /DB_XREF=GI:6324665 /SEG=NC_001147:+493265,494470 /DEF=Hypothetical ORF /NOTE=Yor091wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10684247]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005617 // YOR091W SGDID:S0005617, Chr XV from 493265-494470, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017530 // cdna:Genscan chromosome:SGD1:XV:493433:494470:1 // ensembl // 11 // --- /// GENEFINDER00000022861 // cdna:GeneFinder chromosome:SGD1:XV:493433:494470:1 // ensembl // 11 // --- /// YOR091W // cdna:known chromosome:SGD1:XV:493265:494470:1 gene:YOR091W // ensembl // 11 // --- --- No cerevisiae_gene 1.09619666666541 -1.67581774034805 -1.15831102892189 -1.31593190297361 1.09195511720973 Max fold change below threshold 4 1.67581774034805 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778495_at YML001W.S1 Gtp-binding protein of the rab family; required for homotypic fusion event in vacuole inheritance, for endosome-endosome fusion, and for fusion of endosomes to vacuoles when expressed from high copy plasmid; GTP-binding protein, rab family 1.67558120450229 1888.74951171875 1232.22198486328 YPT7 11 // vacuole inheritance // inferred from direct assay /// 6896 // Golgi to vacuole transport // traceable author statement /// 16192 // vesicle-mediated transport // inferred from direct assay 5773 // vacuole // inferred from direct assay 3924 // GTPase activity // traceable author statement 1187.02587890625 1988.95825195313 1788.54077148438 1277.41809082031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML001W /GEN=YPT7 /DB_XREF=GI:6323642 /SEG=NC_001145:+267174,267800 /DEF=Gtp-binding protein of the rab family; required for homotypic fusion event in vacuole inheritance, for endosome-endosome fusion, and for fusion of endosomes to vacuoles when expressed from high copy plasmid /NOTE=Ypt7p; go_component: vacuole [goid GO:0005773] [evidence IDA] [pmid 11590240]; go_function: GTPase activity [goid GO:0003924] [evidence TAS] [pmid 9714809]; go_process: Golgi to vacuole transport [goid GO:0006896] [evidence TAS] [pmid 9714809]; go_process: vacuole inheritance [goid GO:0000011] [evidence IDA] [pmid 7489715]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IDA] [pmid 9015302] --- --- --- --- --- --- S0004460 // YPT7 SGDID:S0004460, Chr XIII from 267174-267800, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021823 // cdna:GeneFinder chromosome:SGD1:XIII:267174:267800:1 // ensembl // 11 // --- /// YML001W // cdna:known chromosome:SGD1:XIII:267174:267800:1 gene:YML001W // ensembl // 11 // --- GENSCAN00000018718 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 1.24362348207282 1.67558120450229 1.3190873082962 1.50674117832408 1.07615016110462 Max fold change below threshold 4 1.67558120450229 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774255_at YMR121C.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl15Ap and has similarity to rat L15 ribosomal protein; binds to 5.8 S rRNA 1.67531309160921 1479.89270019531 1046.86395263672 RPL15B 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3723 // RNA binding // inferred from direct assay /// 3735 // structural constituent of ribosome // traceable author statement 948.565551757813 1589.14428710938 1370.64111328125 1145.16235351563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR121C /GEN=RPL15B /DB_XREF=GI:6323769 /SEG=NC_001145:-509733,510347 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl15Ap and has similarity to rat L15 ribosomal protein; binds to 5.8 S rRNA /NOTE=Rpl15bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 6337137]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004728 // RPL15B SGDID:S0004728, Chr XIII from 510347-509733, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018815 // cdna:Genscan chromosome:SGD1:XIII:509733:510347:-1 // ensembl // 11 // --- /// GENEFINDER00000022058 // cdna:GeneFinder chromosome:SGD1:XIII:509733:510347:-1 // ensembl // 11 // --- /// YMR121C // cdna:known chromosome:SGD1:XIII:509733:510347:-1 gene:YMR121C // ensembl // 11 // --- --- No cerevisiae_gene 1.23412703366218 1.67531309160921 -1.37254995125823 1.44496193303803 1.20725694855089 Max fold change below threshold 4 1.67531309160921 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770766_at YIL009C-A.S1 Component of the telomerase holoenzyme, involved in telomere replication 1.67505901020967 453.412612915039 738.153747558594 EST3 7004 // telomerase-dependent telomere maintenance // traceable author statement 5634 // nucleus // inferred from direct assay /// 5697 // telomerase holoenzyme complex // traceable author statement /// 5697 // telomerase holoenzyme complex // inferred from direct assay /// 5697 // telomerase holoenzyme complex // inferred from physical interaction 3720 // telomerase activity // inferred from direct assay /// 3720 // telomerase activity // inferred from physical interaction 750.037780761719 447.767974853516 459.057250976563 726.269714355469 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL009C-A /GEN=EST3 /DB_XREF=GI:6322181 /SEG=NC_001141:-335663,336209 /DEF=Component of the telomerase holoenzyme, involved in telomere replication /NOTE=Est3p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12101098]; go_component: telomerase holoenzyme complex [goid GO:0005697] [evidence IDA,IPI] [pmid 10898986]; go_component: telomerase holoenzyme complex [goid GO:0005697] [evidence TAS] [pmid 11884619]; go_function: telomerase activity [goid GO:0003720] [evidence IDA,IPI] [pmid 10898986]; go_process: telomerase-dependent telomere maintenance [goid GO:0007004] [evidence TAS] [pmid 11884619] --- --- --- --- --- --- S0006432 // EST3 SGDID:S0006432, Chr IX from 336209-335934,335932-335663, reverse complement, one base removed to allow translational frameshift, Verified ORF // sgd // 11 // --- /// YIL009C-A // cdna:known chromosome:SGD1:IX:335663:336209:-1 gene:YIL009C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.03598570701746 -1.67505901020967 1.02562802215611 -1.63386544742763 -1.03272622544552 Max fold change below threshold 4 1.67505901020967 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776255_at YOR123C.S1 Component of the Paf1 complex, which associates with RNA polymerase II and is involved in histone methylation 1.67490311665131 734.595947265625 527.967742919922 LEO1 6366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 6368 // RNA elongation from RNA polymerase II promoter // inferred from physical interaction /// 16571 // histone methylation // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 8023 // transcription elongation factor complex // inferred from physical interaction /// 16593 // Cdc73/Paf1 complex // inferred from physical interaction /// 16593 // Cdc73/Paf1 complex // traceable author statement 16944 // RNA polymerase II transcription elongation factor activity // inferred from physical interaction 506.634765625 620.627746582031 848.564147949219 549.300720214844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR123C /GEN=LEO1 /DB_XREF=GI:6324697 /SEG=NC_001147:-553176,554570 /DEF=member of the RNA polymerase II-associated Paf1 complex /NOTE=Leo1p; go_component: Cdc73/Paf1 complex [goid GO:0016593] [evidence IPI] [pmid 11884586]; go_component: Cdc73/Paf1 complex [goid GO:0016593] [evidence TAS] [pmid 12773564]; go_component: transcription elongation factor complex [goid GO:0008023] [evidence IPI] [pmid 12242279]; go_function: Pol II transcription elongation factor activity [goid GO:0016944] [evidence IPI] [pmid 12242279]; go_process: RNA elongation from Pol II promoter [goid GO:0006368] [evidence IPI] [pmid 12242279]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IMP] [pmid 11884586] --- --- --- --- --- --- S0005649 // LEO1 SGDID:S0005649, Chr XV from 554570-553176, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017551 // cdna:Genscan chromosome:SGD1:XV:553176:554570:-1 // ensembl // 11 // --- /// GENEFINDER00000022816 // cdna:GeneFinder chromosome:SGD1:XV:553176:554570:-1 // ensembl // 11 // --- /// YOR123C // cdna:known chromosome:SGD1:XV:553176:554570:-1 gene:YOR123C // ensembl // 11 // --- --- No cerevisiae_gene 1.4223055056535 1.22500031322644 1.20761901641114 1.67490311665131 1.08421442325856 Max fold change below threshold 4 1.67490311665131 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770662_at YJR014W.S1 Hypothetical protein 1.67453878270575 1173.42614746094 897.389221191406 --- --- 5737 // cytoplasm // inferred from direct assay 3723 // RNA binding // inferred from sequence similarity 838.887634277344 942.102416992188 1404.74987792969 955.890808105469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR014W /GEN=SPC1 /DB_XREF=GI:6322474 /SEG=NC_001142:+461743,462339 /DEF=Hypothetical ORF /NOTE=Yjr014wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 10093218]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003775 // YJR014W SGDID:S0003775, Chr X from 461743-462339, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024145 // cdna:Genscan chromosome:SGD1:X:461743:462339:1 // ensembl // 11 // --- /// GENEFINDER00000024265 // cdna:GeneFinder chromosome:SGD1:X:461743:462339:1 // ensembl // 11 // --- /// YJR014W // cdna:known chromosome:SGD1:X:461743:462339:1 gene:YJR014W // ensembl // 11 // --- --- No cerevisiae_gene 1.50976937043516 1.1230376733396 -1.03746490036232 1.67453878270575 1.13947419063927 Max fold change below threshold 4 1.67453878270575 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779310_at YDR164C.S1 Sm-like protein involved in docking and fusion of exocytic vesicles through binding to assembled SNARE complexes at the membrane; localization to sites of secretion (bud neck and bud tip) is dependent on SNARE function 1.67446012236472 228.324508666992 348.449691772461 SEC1 6887 // exocytosis // inferred from mutant phenotype /// 6887 // exocytosis // inferred from physical interaction /// 6904 // vesicle docking during exocytosis // inferred from physical interaction /// 6906 // vesicle fusion // inferred from mutant phenotype /// 6906 // vesicle fusion // inferred from direct assay 5886 // plasma membrane // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 31201 // SNARE complex // inferred from physical interaction 149 // SNARE binding // inferred from direct assay 344.255035400391 205.591659545898 251.057357788086 352.644348144531 0.000732421991415322 0.000244141003349796 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR164C /GEN=SEC1 /DB_XREF=GI:6320368 /SEG=NC_001136:-782035,784209 /DEF=SEC1 encodes a hydrophilic protein involved in SNARE complex function /NOTE=Sec1p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 11038189]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 11038189]; go_function: SNARE binding [goid GO:0000149] [evidence IDA] [pmid 10427089]; go_process: exocytosis [goid GO:0006887] [evidence IMP,IPI] [pmid 10427089]; go_process: vesicle docking during exocytosis [goid GO:0006904] [evidence IPI] [pmid 10427089]; go_process: vesicle fusion [goid GO:0006906] [evidence IMP] [pmid 10427089] --- --- --- --- --- --- S0002571 // SEC1 SGDID:S0002571, Chr IV from 784210-782036, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023766 // cdna:GeneFinder chromosome:SGD1:IV:782036:783769:-1 // ensembl // 11 // --- /// GENSCAN00000025219 // cdna:Genscan chromosome:SGD1:IV:782036:784210:-1 // ensembl // 11 // --- /// YDR164C // cdna:known chromosome:SGD1:IV:782036:784210:-1 gene:YDR164C // ensembl // 11 // --- --- No cerevisiae_gene -1.46248775080266 -1.67446012236472 1.17864724491689 -1.3712206582329 1.02436946996108 Max fold change below threshold 4 1.67446012236472 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778049_at SPAC6F12.13c.S1 --- 1.67396534215257 --- --- --- --- 0.955399751663208 0.607857942581177 1.09544861316681 0.570740461349487 0.932372987270355 0.985840022563934 0.976073980331421 0.985840022563934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F12.13c /DEF=farnesyl pyrophosphate synthetase --- --- --- --- --- --- D89104 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0144. // gb // 10 // --- /// SPAC6F12.13c // |||farnesyl pyrophosphate synthetase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.46529268102717 -1.57174840490896 1.16172577264584 1.14658666307982 -1.67396534215257 Max fold change below threshold 0 1.67396534215257 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770502_x_at YGL189C.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps26Bp and has similarity to rat S26 ribosomal protein 1.6739290997775 3342.51525878906 4661.40600585938 RPS26A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 5021.349609375 3508.35766601563 3176.6728515625 4301.46240234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL189C /GEN=RPS26A /DB_XREF=GI:6321249 /SEG=NC_001139:-148233,148592 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps26Bp and has similarity to rat S26 ribosomal protein /NOTE=Rps26ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0003157 // RPS26A SGDID:S0003157, Chr VII from 148594-148235, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019208 // cdna:Genscan chromosome:SGD1:VII:148235:148594:-1 // ensembl // 11 // --- /// GENEFINDER00000021646 // cdna:GeneFinder chromosome:SGD1:VII:148235:148594:-1 // ensembl // 11 // --- /// YGL189C // cdna:known chromosome:SGD1:VII:148235:148594:-1 gene:YGL189C // ensembl // 11 // --- --- No cerevisiae_gene -1.09402308425129 -1.43125361989607 -1.6739290997775 -1.5806945958899 -1.16735871192063 Max fold change below threshold 4 1.6739290997775 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779695_at SPAC22A12.08c.S1 --- 1.67385758125076 --- --- --- --- 1.25131177902222 1.02624714374542 1.06501150131226 0.870723366737366 0.932372987270355 0.884033203125 0.870360970497131 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22A12.08c /DEF=cardiolipin synthase activity (predicted) --- --- --- --- --- --- SPAC22A12.08c // |||cardiolipin synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.12602542812885 -1.21930841576366 1.67385758125076 -1.17492794911643 -1.43709452028482 Max fold change below threshold 0 1.67385758125076 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770259_at YDL106C.S1 Homeobox transcription factor; regulatory targets include genes involved in phosphate metabolism; binds cooperatively with Pho4p to the PHO5 promoter; phosphorylation of Pho2p facilitates interaction with Pho4p 1.67376410630574 558.670623779297 420.013290405273 PHO2 105 // histidine biosynthesis // traceable author statement /// 6350 // transcription // inferred from genetic interaction /// 6350 // transcription // traceable author statement /// 9113 // purine base biosynthesis // inferred from direct assay /// 16036 // cellular response to phosphate starvation // traceable author statement 5634 // nucleus // inferred from direct assay 3700 // transcription factor activity // inferred from sequence similarity /// 3700 // transcription factor activity // inferred from genetic interaction /// 3700 // transcription factor activity // inferred from physical interaction /// 3700 // transcription factor activity // inferred from mutant phenotype /// 3700 // transcription factor activity // traceable author statement 390.828979492188 463.185729980469 654.155517578125 449.197601318359 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL106C /GEN=PHO2 /DB_XREF=GI:6320097 /SEG=NC_001136:-270222,271901 /DEF=Homeobox transcription factor; regulatory targets include genes involved in phosphate metabolism; binds cooperatively with Pho4p to the PHO5 promoter; phosphorylation of Pho2p facilitates interaction with Pho4p /NOTE=Pho2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 1493793]; go_function: transcription factor activity [goid GO:0003700] [evidence IGI,IMP,TAS] [pmid 3049251]; go_function: transcription factor activity [goid GO:0003700] [evidence IPI,ISS] [pmid 7902583]; go_process: cellular response to phosphate starvation [goid GO:0016036] [evidence TAS] [pmid 8918192]; go_process: histidine biosynthesis [goid GO:0000105] [evidence TAS] [pmid 1495962]; go_process: purine base biosynthesis [goid GO:0009113] [evidence IDA] [pmid 1495962]; go_process: transcription [goid GO:0006350] [evidence IGI,TAS] [pmid 12145299] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 9.00000005261382E-26 --- S0002264 // PHO2 SGDID:S0002264, Chr IV from 271901-270222, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023881 // cdna:GeneFinder chromosome:SGD1:IV:270222:271118:-1 // ensembl // 11 // --- /// GENSCAN00000025020 // cdna:Genscan chromosome:SGD1:IV:270222:271709:-1 // ensembl // 11 // --- /// YDL106C // cdna:known chromosome:SGD1:IV:270222:271901:-1 gene:YDL106C // ensembl // 11 // --- --- No cerevisiae_gene -1.13637532491802 1.18513660522896 1.18742790873891 1.67376410630574 1.14934568542489 Max fold change below threshold 4 1.67376410630574 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775807_at YOR260W.S1 Gamma subunit of the translation initiation factor eIF2B, the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression 1.67355620313878 440.984786987305 612.377685546875 GCD1 6413 // translational initiation // traceable author statement 5840 // ribosome // traceable author statement /// 5851 // eukaryotic translation initiation factor 2B complex // inferred from direct assay 3743 // translation initiation factor activity // traceable author statement /// 5085 // guanyl-nucleotide exchange factor activity // inferred from direct assay /// 5085 // guanyl-nucleotide exchange factor activity // inferred from physical interaction 599.458557128906 402.486083984375 479.483489990234 625.296813964844 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR260W /GEN=GCD1 /DB_XREF=GI:6324834 /SEG=NC_001147:+813982,815718 /DEF=Gamma subunit of the translation initiation factor eIF2B, the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression /NOTE=Gcd1p; go_component: eukaryotic translation initiation factor 2B complex [goid GO:0005851] [evidence IDA] [pmid 8336705]; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 9841679]; go_function: translation initiation factor activity [goid GO:0003743] [evidence TAS] [pmid 9841679]; go_process: translational initiation [goid GO:0006413] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0005786 // GCD1 SGDID:S0005786, Chr XV from 813982-815718, Verified ORF // sgd // 10 // --- /// GENSCAN00000017691 // cdna:Genscan chromosome:SGD1:XV:813982:815718:1 // ensembl // 10 // --- /// GENEFINDER00000022662 // cdna:GeneFinder chromosome:SGD1:XV:814570:815718:1 // ensembl // 10 // --- /// YOR260W // cdna:known chromosome:SGD1:XV:813982:815718:1 gene:YOR260W // ensembl // 10 // --- --- No cerevisiae_gene 1.42935555146251 -1.48938952421564 -1.67355620313878 -1.25021730600383 1.04310265743755 Max fold change below threshold 4 1.67355620313878 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773187_at YMR106C.S1 Subunit of the telomeric Ku complex (Yku70p-Yku80p), involved in telomere length maintenance, structure and telomere position effect; relocates to sites of double-strand cleavage to promote nonhomologous end joining during DSB repair 1.67329621094491 306.225616455078 374.442977905273 YKU80 723 // telomere maintenance // inferred from mutant phenotype /// 724 // double-strand break repair via homologous recombination // inferred from mutant phenotype /// 6303 // double-strand break repair via nonhomologous end-joining // inferred from direct assay /// 6333 // chromatin assembly or disassembly // inferred from direct assay /// 6342 // chromatin silencing // inferred from mutant phenotype /// 6342 // chromatin silencing // inferred from direct assay 790 // nuclear chromatin // traceable author statement /// 5724 // nuclear telomeric heterochromatin // traceable author statement 3684 // damaged DNA binding // traceable author statement /// 3723 // RNA binding // inferred from direct assay 335.145629882813 280.464263916016 331.986968994141 413.740325927734 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR106C /GEN=YKU80 /DB_XREF=GI:6323753 /SEG=NC_001145:-478300,480189 /DEF=Forms heterodimer with Yku70p known as Ku, binds chromosome ends and is involved in maintaining normal telomere length and structure, in addition to participating in the formation of silent chromatin at telomere-proximal genes /NOTE=Yku80p; go_component: nuclear chromatin [goid GO:0000790] [evidence TAS] [pmid 10367891]; go_component: nuclear telomeric heterochromatin [goid GO:0005724] [evidence TAS] [pmid 12080091]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 12975323]; go_function: damaged DNA binding [goid GO:0003684] [evidence TAS] [pmid 10367891]; go_process: chromatin assembly/disassembly [goid GO:0006333] [evidence IDA] [pmid 11553718]; go_process: chromatin silencing [goid GO:0006342] [evidence IDA,IMP] [pmid 9501103]; go_process: double-strand break repair via homologous recombination [goid GO:0000724] [evidence IMP] [pmid 11016833]; go_process: double-strand break repair via nonhomologous end-joining [goid GO:0006303] [evidence IDA] [pmid 10908335]; go_process: telomere maintenance [goid GO:0000723] [evidence IMP] [pmid 10818099] --- --- --- --- --- --- S0004712 // YKU80 SGDID:S0004712, Chr XIII from 480189-478300, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018800 // cdna:Genscan chromosome:SGD1:XIII:478300:480189:-1 // ensembl // 10 // --- /// GENEFINDER00000022032 // cdna:GeneFinder chromosome:SGD1:XIII:478300:480189:-1 // ensembl // 10 // --- /// YMR106C // cdna:known chromosome:SGD1:XIII:478300:480189:-1 gene:YMR106C // ensembl // 10 // --- --- No cerevisiae_gene 1.02484135023218 -1.19496732026855 1.67329621094491 -1.00951441226215 1.2345090881012 Max fold change below threshold 4 1.67329621094491 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777206_at YJL010C.S1 Essential nucleolar protein required for 18S rRNA synthesis 1.67282165127941 133.743453979492 234.173736572266 --- 6364 // rRNA processing // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay 3723 // RNA binding // inferred from sequence similarity 210.503173828125 125.837188720703 141.649719238281 257.844299316406 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL010C /GEN=RPC17 /DB_XREF=GI:6322450 /SEG=NC_001142:-417477,419477 /DEF=Protein required for cell viability /NOTE=Yjl010cp; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14690591]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_function: RNA binding [goid GO:0003723] [evidence ISS] [pmid 14690591]; go_process: rRNA processing [goid GO:0006364] [evidence IPI] [pmid 14690591] --- --- --- --- --- --- S0003547 // YJL010C SGDID:S0003547, Chr X from 419477-417477, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024128 // cdna:Genscan chromosome:SGD1:X:417477:419477:-1 // ensembl // 11 // --- /// GENEFINDER00000024304 // cdna:GeneFinder chromosome:SGD1:X:417477:419477:-1 // ensembl // 11 // --- /// YJL010C // cdna:known chromosome:SGD1:X:417477:419477:-1 gene:YJL010C // ensembl // 11 // --- --- No cerevisiae_gene 1.09564101025143 -1.67282165127941 1.13956420395699 -1.48608253486207 1.22489506750589 Max fold change below threshold 4 1.67282165127941 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774565_at YFR007W.S1 Hypothetical protein 1.67280293031005 732.749420166016 541.234115600586 --- --- --- --- 500.685272216797 627.951049804688 837.547790527344 581.782958984375 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR007W /GEN=SAD1 /DB_XREF=GI:14318529 /SEG=NC_001138:+159293,160354 /DEF=Hypothetical ORF /NOTE=Yfr007wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001903 // YFR007W SGDID:S0001903, Chr VI from 159293-160354, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000023249 // cdna:Genscan chromosome:SGD1:VI:159293:160354:1 // ensembl // 11 // --- /// YFR007W // cdna:known chromosome:SGD1:VI:159293:160354:1 gene:YFR007W // ensembl // 11 // --- --- No cerevisiae_gene 1.45036718779285 1.25418318582534 1.20992255792004 1.67280293031005 1.16197338181831 Max fold change below threshold 4 1.67280293031005 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774797_at YDR121W.S1 Shared subunit of DNA polymerase epsilon and of ISW2/yCHRAC chromatin accessibility complex; involved in both chromosomal DNA replication and in inheritance of telomeric silencing 1.67278010271624 320.475158691406 438.105117797852 DPB4 6272 // leading strand elongation // inferred from mutant phenotype /// 6272 // leading strand elongation // inferred from physical interaction /// 6272 // leading strand elongation // inferred from genetic interaction /// 6273 // lagging strand elongation // inferred from mutant phenotype /// 6273 // lagging strand elongation // inferred from physical interaction /// 6273 // lagging strand elongation // inferred from genetic interaction /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype 8622 // epsilon DNA polymerase complex // inferred from direct assay /// 8623 // chromatin accessibility complex // inferred from physical interaction 3893 // epsilon DNA polymerase activity // inferred from mutant phenotype /// 3893 // epsilon DNA polymerase activity // inferred from physical interaction 390.117584228516 284.603668212891 356.346649169922 486.092651367188 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR121W /GEN=DPB4 /DB_XREF=GI:6320326 /SEG=NC_001136:+693579,694169 /DEF=Shared subunit of DNA polymerase epsilon and of ISW2/yCHRAC chromatin accessibility complex; involved in both chromosomal DNA replication and in inheritance of telomeric silencing /NOTE=Dpb4p; go_component: chromatin accessibility complex [goid GO:0008623] [evidence IPI,ISS] [pmid 14673157]; go_component: epsilon DNA polymerase complex [goid GO:0008622] [evidence IDA] [pmid 11024162]; go_function: epsilon DNA polymerase activity [goid GO:0003893] [evidence IMP,IPI] [pmid 11024162]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 14673157]; go_process: lagging strand elongation [goid GO:0006273] [evidence IGI,IMP,IPI] [pmid 11024162]; go_process: leading strand elongation [goid GO:0006272] [evidence IGI,IMP,IPI] [pmid 11024162] --- --- --- --- --- --- S0002528 // DPB4 SGDID:S0002528, Chr IV from 693580-694170, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023880 // cdna:GeneFinder chromosome:SGD1:IV:693580:694170:1 // ensembl // 11 // --- /// GENSCAN00000025186 // cdna:Genscan chromosome:SGD1:IV:693580:694170:1 // ensembl // 11 // --- /// YDR121W // cdna:known chromosome:SGD1:IV:693580:694170:1 gene:YDR121W // ensembl // 11 // --- --- No cerevisiae_gene 1.67278010271624 -1.37073983156358 1.17117587040603 -1.09476989649618 1.24601574248049 Max fold change below threshold 4 1.67278010271624 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772009_at YLR270W.S1 Non-essential hydrolase involved in mRNA decapping, may function in a feedback mechanism to regulate deadenylation, contains pyrophosphatase activity and a HIT (histidine triad) motif; interacts with neutral trehalase Nth1p 1.67251664856202 2543.29870605469 3700.26745605469 DCS1 290 // deadenylylation-dependent decapping // inferred from direct assay /// 290 // deadenylylation-dependent decapping // inferred from mutant phenotype /// 290 // deadenylylation-dependent decapping // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 16818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from direct assay /// 16818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from sequence similarity /// 16818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from mutant phenotype 3960.82934570313 2368.18530273438 2718.412109375 3439.70556640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR270W /GEN=DCS1 /DB_XREF=GI:6323299 /SEG=NC_001144:+681188,682240 /DEF=Non-essential hydrolase involved in mRNA decapping, may function in a feedback mechanism to regulate deadenylation, contains pyrophosphatase activity and a HIT (histidine triad) motif; interacts with neutral trehalase Nth1p /NOTE=Dcs1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [goid GO:0016818] [evidence IDA,IMP,ISS] [pmid 12198172]; go_process: deadenylation-dependent decapping [goid GO:0000290] [evidence IDA,IMP,ISS] [pmid 12198172] --- --- --- --- --- --- S0004260 // DCS1 SGDID:S0004260, Chr XII from 681188-682240, Verified ORF // sgd // 11 // --- /// AY165035 // Saccharomyces cerevisiae scavenger mRNA decapping enzyme (DCS1) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000018031 // cdna:Genscan chromosome:SGD1:XII:681188:682240:1 // ensembl // 11 // --- /// GENEFINDER00000024763 // cdna:GeneFinder chromosome:SGD1:XII:681188:682240:1 // ensembl // 11 // --- /// YLR270W // cdna:known chromosome:SGD1:XII:681188:682240:1 gene:YLR270W // ensembl // 11 // --- --- No cerevisiae_gene -1.49679785932871 -1.67251664856202 -1.10798172244641 -1.45703785384247 -1.15150243799539 Max fold change below threshold 4 1.67251664856202 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774550_at YER019W.S1 Inositol phosphosphingolipid phospholipase C, hydrolyzes inositolphosphosphingolipids, activated by phosphatidylserine, cardiolipin, and phosphatidylglycerol, mediates Na+ and Li+ halotolerance, contains a P loop-like domain 1.67238866044427 651.266296386719 636.085296630859 ISC1 9651 // response to salt stress // inferred from mutant phenotype /// 30149 // sphingolipid catabolism // inferred from direct assay 5739 // mitochondrion // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay 4629 // phospholipase C activity // inferred from direct assay 648.037902832031 623.325256347656 679.207336425781 624.132690429688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER019W /GEN=ISC1 /DB_XREF=GI:6320856 /SEG=NC_001137:+192796,194229 /DEF=Inositol phosphosphingolipid phospholipase C, hydrolyzes inositolphosphosphingolipids, activated by phosphatidylserine, cardiolipin, and phosphatidylglycerol, mediates Na+ and Li+ halotolerance, contains a P loop-like domain /NOTE=Isc1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: phospholipase C activity [goid GO:0004629] [evidence IDA] [pmid 11006294]; go_process: response to salt stress [goid GO:0009651] [evidence IMP] [pmid 12180980]; go_process: sphingolipid catabolism [goid GO:0030149] [evidence IDA] [pmid 11006294] --- --- --- --- --- S0000821 // span:393-415,425-447 // numtm:2 S0000821 // ISC1 SGDID:S0000821, Chr V from 192796-194229, Verified ORF // sgd // 11 // --- /// GENSCAN00000016821 // cdna:Genscan chromosome:SGD1:V:192796:194229:1 // ensembl // 11 // --- /// GENEFINDER00000019762 // cdna:GeneFinder chromosome:SGD1:V:192883:194229:1 // ensembl // 11 // --- /// YER019W // cdna:known chromosome:SGD1:V:192796:194229:1 gene:YER019W // ensembl // 11 // --- L38891 // gb // 5 // Negative Strand Matching Probes No cerevisiae_gene 1.67238866044427 -1.03964647065511 -1.32823607841675 1.04809816440911 -1.03830149064278 Max fold change below threshold 4 1.67238866044427 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779482_at YCL009C.S1 Regulatory subunit of acetolactate synthase, which catalyzes the first step of branched-chain amino acid biosynthesis; enhances activity of the Ilv2p catalytic subunit, localizes to mitochondria 1.67187775058103 3165.16333007813 2731.33972167969 ILV6 9082 // branched chain family amino acid biosynthesis // inferred from direct assay /// 9082 // branched chain family amino acid biosynthesis // inferred from sequence similarity 5739 // mitochondrion // inferred from direct assay /// 5948 // acetolactate synthase complex // inferred from direct assay /// 42645 // mitochondrial nucleoid // inferred from direct assay 3984 // acetolactate synthase activity // inferred from direct assay /// 30234 // enzyme regulator activity // inferred from direct assay 2840.37866210938 3122.658203125 3207.66845703125 2622.30078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL009C /GEN=ILV6 /DB_XREF=GI:6319837 /SEG=NC_001135:-104618,105547 /DEF=Regulatory subunit of acetolactate synthase, which catalyzes the first step of branched-chain amino acid biosynthesis; enhances activity of the Ilv2p catalytic subunit, localizes to mitochondria /NOTE=Ilv6p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 10213630]; go_function: acetolactate synthase activity [goid GO:0003984] [evidence IDA] [pmid 8972574]; go_function: enzyme regulator activity [goid GO:0030234] [evidence IDA] [pmid 8972574]; go_process: branched chain family amino acid biosynthesis [goid GO:0009082] [evidence IDA,ISS] [pmid 8972574] --- --- --- --- --- --- S0000515 // ILV6 SGDID:S0000515, Chr III from 105547-104618, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022458 // cdna:Genscan chromosome:SGD1:III:104618:105487:-1 // ensembl // 11 // --- /// GENEFINDER00000023293 // cdna:GeneFinder chromosome:SGD1:III:104618:105487:-1 // ensembl // 11 // --- /// YCL009C // cdna:known chromosome:SGD1:III:104618:105547:-1 gene:YCL009C // ensembl // 11 // --- --- No cerevisiae_gene -1.1693260675629 1.09938095394858 -1.67187775058103 1.1293101514321 -1.08316280207773 Max fold change below threshold 4 1.67187775058103 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778330_at YJR051W.S1 Fumarate reductase, catalyzes the reduction of fumarate to succinate, required for the reoxidation of intracellular NADH under anaerobic conditions; mutations cause osmotic sensitivity 1.67162033097571 768.812103271484 694.345336914063 OSM1 8152 // metabolism // traceable author statement 5739 // mitochondrion // inferred from direct assay 16156 // fumarate reductase (NADH) activity // inferred from direct assay 720.795104980469 650.855102539063 886.769104003906 667.895568847656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR051W /GEN=OSM1 /DB_XREF=GI:6322511 /SEG=NC_001142:+529775,531280 /DEF=osmotic growth protein /NOTE=Osm1p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 9587404]; go_function: fumarate reductase (NADH) activity [goid GO:0016156] [evidence IDA] [pmid 9587404]; go_process: metabolism [goid GO:0008152] [evidence TAS] [pmid 9587404] --- --- --- --- --- S0003812 // span:7-26 // numtm:1 S0003812 // OSM1 SGDID:S0003812, Chr X from 529775-531280, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024279 // cdna:GeneFinder chromosome:SGD1:X:529775:531280:1 // ensembl // 11 // --- /// GENSCAN00000024172 // cdna:Genscan chromosome:SGD1:X:529871:531280:1 // ensembl // 11 // --- /// YJR051W // cdna:known chromosome:SGD1:X:529775:531280:1 gene:YJR051W // ensembl // 11 // --- --- No cerevisiae_gene -1.10594930982043 -1.10745863736577 1.67162033097571 1.23026515840162 -1.0792033045287 Max fold change below threshold 4 1.67162033097571 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775668_at YHL014C.S1 Protein with weak similarity to B. subtilis GTP-binding protein and to human glycogen phosphorylases 1.6714193187018 197.040573120117 329.969543457031 YLF2 --- 5739 // mitochondrion // inferred from direct assay 5525 // GTP binding // inferred from sequence similarity 320.367645263672 202.407135009766 191.674011230469 339.571441650391 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL014C /GEN=YLF2 /DB_XREF=GI:6321773 /SEG=NC_001140:-76093,77310 /DEF=Protein with weak similarity to B. subtilis GTP-binding protein and to human glycogen phosphorylases /NOTE=Ylf2p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 4.59999990463257 --- S0001006 // YLF2 SGDID:S0001006, Chr VIII from 77310-76093, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016542 // cdna:Genscan chromosome:SGD1:VIII:76093:77310:-1 // ensembl // 11 // --- /// YHL014C // cdna:known chromosome:SGD1:VIII:76093:77310:-1 gene:YHL014C // ensembl // 11 // --- GENEFINDER00000020201 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 1.13745566097757 -1.58278830066052 1.05303564830255 -1.6714193187018 1.0599429957133 Max fold change below threshold 4 1.6714193187018 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775669_at YNL207W.S1 Essential serine kinase involved in the processing of the 20S pre-rRNA into mature 18S rRNA; has similarity to Rio1p 1.67131727575517 267.799034118652 440.617736816406 RIO2 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 4672 // protein kinase activity // inferred from direct assay /// 5487 // nucleocytoplasmic transporter activity // inferred from genetic interaction 381.743774414063 228.408920288086 307.189147949219 499.49169921875 0.000732421991415322 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL207W /GEN=RIO2 /DB_XREF=GI:6324122 /SEG=NC_001146:+255352,256629 /DEF=Protein required for cell viability /NOTE=Rio2p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 12612080]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12612080]; go_function: nucleocytoplasmic transporter activity [goid GO:0005487] [evidence IGI] [pmid 12612080]; go_function: protein kinase activity [goid GO:0004672] [evidence IDA] [pmid 12690111]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP,ISS] [pmid 12612080] --- --- --- hanks // 2.1.8 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DdMLCK // 1.0E-4 --- --- S0005151 // RIO2 SGDID:S0005151, Chr XIV from 255352-256629, Verified ORF // sgd // 10 // --- /// GENSCAN00000019875 // cdna:Genscan chromosome:SGD1:XIV:255352:256629:1 // ensembl // 10 // --- /// GENEFINDER00000020584 // cdna:GeneFinder chromosome:SGD1:XIV:255352:256629:1 // ensembl // 10 // --- /// YNL207W // cdna:known chromosome:SGD1:XIV:255352:256629:1 gene:YNL207W // ensembl // 10 // --- --- No cerevisiae_gene 1.40059381340445 -1.67131727575517 1.2863151112241 -1.24269941488027 1.30844753129352 Max fold change below threshold 4 1.67131727575517 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775418_at YBR122C.S1 Mitochondrial ribosomal protein of the large subunit; overproduction suppresses mutations in the COX2 leader peptide-encoding region 1.67128863589868 1184.30352783203 1971.43603515625 MRPL36 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement /// 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // traceable author statement 1972.52331542969 1180.24096679688 1188.36608886719 1970.34875488281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR122C /GEN=MRPL36 /DB_XREF=GI:37362620 /SEG=NC_001134:-483926,484459 /DEF=Mitochondrial ribosomal protein of the large subunit; overproduction suppresses mutations in the COX2 leader peptide-encoding region /NOTE=Mrpl36p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0000326 // MRPL36 SGDID:S0000326, Chr II from 484497-483964, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022271 // cdna:GeneFinder chromosome:SGD1:II:483964:484554:-1 // ensembl // 11 // --- /// YBR122C // cdna:known chromosome:SGD1:II:483964:484497:-1 gene:YBR122C // ensembl // 11 // --- GENSCAN00000021238 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.16334785408331 -1.67128863589868 1.13932009403356 -1.65986166544857 -1.00110364245999 Max fold change below threshold 4 1.67128863589868 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772344_at YLR246W.S1 Subunit of a palmitoyltransferase, composed of Erf2p and Shr5p, that adds a palmitoyl lipid moiety to Ras2p through a thioester linkage; mutants partially mislocalize Ras2p to the vacuole 1.67075618514271 600.860534667969 913.374481201172 ERF2 6612 // protein-membrane targeting // inferred from mutant phenotype /// 18318 // protein amino acid palmitoylation // inferred from direct assay 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay /// 31211 // palmitoyltransferase complex // inferred from physical interaction 19706 // protein-cysteine S-palmitoleyltransferase activity // inferred from mutant phenotype 866.580871582031 518.675842285156 683.045227050781 960.168090820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR246W /GEN=ERF2 /DB_XREF=GI:6323275 /SEG=NC_001144:+627120,628199 /DEF=Subunit of a palmitoyltransferase, composed of Erf2p and Shr5p, that adds a palmitoyl lipid moiety to Ras2p through a thioester linkage; mutants partially mislocalize Ras2p to the vacuole /NOTE=Erf2p; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA] [pmid 10490616]; go_function: palmitoyltransferase activity [goid GO:0016409] [evidence IDA] [pmid 12193598]; go_process: protein amino acid palmitoylation [goid GO:0018318] [evidence IDA] [pmid 12193598]; go_process: protein-membrane targeting [goid GO:0006612] [evidence IMP] [pmid 10490616] --- --- --- --- --- S0004236 // span:76-93,108-125,219-241,251-273 // numtm:4 S0004236 // ERF2 SGDID:S0004236, Chr XII from 627120-628199, Verified ORF // sgd // 11 // --- /// YLR246W // cdna:known chromosome:SGD1:XII:627120:628199:1 gene:YLR246W // ensembl // 11 // --- --- No cerevisiae_gene -1.12689454263303 -1.67075618514271 1.17387472838721 -1.26870203796564 1.10799594395319 Max fold change below threshold 4 1.67075618514271 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778262_at YMR059W.S1 Subunit of the tRNA splicing endonuclease, which is composed of Sen2p, Sen15p, Sen34p, and Sen54p 1.67074754256243 458.609146118164 455.193008422852 SEN15 6388 // tRNA splicing // traceable author statement 214 // tRNA-intron endonuclease complex // traceable author statement /// 5637 // nuclear inner membrane // traceable author statement /// 5741 // mitochondrial outer membrane // inferred from direct assay /// 5741 // mitochondrial outer membrane // inferred from mutant phenotype /// 5741 // mitochondrial outer membrane // inferred from physical interaction 213 // tRNA-intron endonuclease activity // traceable author statement 437.284851074219 447.791656494141 469.426635742188 473.101165771484 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR059W /GEN=SEN15 /DB_XREF=GI:6323704 /SEG=NC_001145:+391038,391484 /DEF=Subunit of the tRNA splicing endonuclease, which is composed of Sen2p, Sen15p, Sen34p, and Sen54p /NOTE=Sen15p; go_component: mitochondrial outer membrane [goid GO:0005741] [evidence IDA,IMP,IPI] [pmid 12925762]; go_component: nuclear inner membrane [goid GO:0005637] [evidence TAS] [pmid 9582290]; go_component: tRNA-intron endonuclease complex [goid GO:0000214] [evidence TAS] [pmid 9582290]; go_function: tRNA-intron endonuclease activity [goid GO:0000213] [evidence TAS] [pmid 9582290]; go_process: tRNA splicing [goid GO:0006388] [evidence TAS] [pmid 9582290] --- --- --- --- --- --- S0004663 // SEN15 SGDID:S0004663, Chr XIII from 391038-391484, Verified ORF // sgd // 11 // --- /// YMR059W // cdna:known chromosome:SGD1:XIII:391038:391484:1 gene:YMR059W // ensembl // 11 // --- --- No cerevisiae_gene -1.13514858979735 1.02402737116118 1.67074754256243 1.07350308291954 1.08190614106407 Max fold change below threshold 4 1.67074754256243 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774621_at YMR194W.S1 N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl36Bp and has similarity to rat L36 ribosomal protein; binds to 5.8 S rRNA 1.67050162283361 1690.37713623047 1669.03466796875 RPL36A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3723 // RNA binding // inferred from direct assay /// 3735 // structural constituent of ribosome // traceable author statement 1626.52990722656 1945.03356933594 1435.720703125 1711.53942871094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR194W /GEN=RPL36A /DB_XREF=GI:6323848 /SEG=NC_001145:+651144,651909 /DEF=N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl36Ap and has similarity to rat L36 ribosomal protein; binds to 5.8 S rRNA /NOTE=Rpl36ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 6337137]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004807 // RPL36A SGDID:S0004807, Chr XIII from 651144-651159,651623-651909, intron sequence removed, Verified ORF // sgd // 11 // --- /// YMR194W // cdna:known chromosome:SGD1:XIII:651144:651909:1 gene:YMR194W // ensembl // 11 // --- GENEFINDER00000021824 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 1.67050162283361 1.19581789470595 -1.15546936420335 -1.13290133915757 1.05226434577482 Max fold change below threshold 4 1.67050162283361 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777112_at YDR294C.S1 Dihydrosphingosine phosphate lyase, regulates intracellular levels of sphingolipid long-chain base phosphates (LCBPs), degrades phosphorylated long chain bases, prefers C16 dihydrosphingosine-l-phosphate as a substrate 1.67043247935313 1530.46026611328 1598.81549072266 DPL1 6665 // sphingolipid metabolism // inferred from genetic interaction /// 6665 // sphingolipid metabolism // inferred from mutant phenotype /// 9267 // cellular response to starvation // inferred from mutant phenotype /// 19722 // calcium-mediated signaling // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay 8117 // sphinganine-1-phosphate aldolase activity // inferred from direct assay 1598.5673828125 1293.91101074219 1767.00952148438 1599.06359863281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR294C /GEN=DPL1 /DB_XREF=GI:6320500 /SEG=NC_001136:-1050451,1052220 /DEF=Dihydrosphingosine phosphate lyase, regulates intracellular levels of sphingolipid long-chain base phosphates (LCBPs), degrades phosphorylated long chain bases, prefers C16 dihydrosphingosine-l-phosphate as a substrate /NOTE=Dpl1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: sphinganine-1-phosphate aldolase activity [goid GO:0008117] [evidence IDA] [pmid 9334171]; go_process: calcium-mediated signaling [goid GO:0019722] [evidence IMP] [pmid 11278643]; go_process: cellular response to starvation [goid GO:0009267] [evidence IMP] [pmid 10329480]; go_process: sphingolipid metabolism [goid GO:0006665] [evidence IGI,IMP] [pmid 9334171] --- --- --- --- --- --- S0002702 // DPL1 SGDID:S0002702, Chr IV from 1052222-1050453, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023967 // cdna:GeneFinder chromosome:SGD1:IV:1050453:1052222:-1 // ensembl // 11 // --- /// GENSCAN00000025325 // cdna:Genscan chromosome:SGD1:IV:1050453:1052060:-1 // ensembl // 11 // --- /// YDR294C // cdna:known chromosome:SGD1:IV:1050453:1052222:-1 gene:YDR294C // ensembl // 11 // --- --- No cerevisiae_gene -1.67043247935313 -1.2354538832586 1.06563257323299 1.10537068407809 1.00031041282691 Max fold change below threshold 4 1.67043247935313 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779404_at YJL061W.S1 Subunit of the nuclear pore complex (NPC), forms a subcomplex with Nup159p and Nsp1p, interacts with Nup116p and is required for proper localization of Nup116p in the NPC 1.67028957350894 284.570343017578 215.273170471191 NUP82 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6999 // nuclear pore organization and biogenesis // traceable author statement 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement 210.096282958984 285.978637695313 283.162048339844 220.450057983398 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL061W /GEN=NUP82 /DB_XREF=GI:6322400 /SEG=NC_001142:+319932,322073 /DEF=Subunit of the nuclear pore complex (NPC), forms a subcomplex with Nup159p and Nsp1p, interacts with Nup116p and is required for proper localization of Nup116p in the NPC /NOTE=Nup82p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0003597 // NUP82 SGDID:S0003597, Chr X from 319932-322073, Verified ORF // sgd // 11 // --- /// GENSCAN00000024093 // cdna:Genscan chromosome:SGD1:X:319932:322073:1 // ensembl // 11 // --- /// YJL061W // cdna:known chromosome:SGD1:X:319932:322073:1 gene:YJL061W // ensembl // 11 // --- --- No cerevisiae_gene 1.67028957350894 1.36117894932554 1.3373925383855 1.34777276566632 1.04928109568904 Max fold change below threshold 4 1.67028957350894 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770424_at YGL013C.S1 Zinc cluster protein that is a master regulator involved in recruiting other zinc cluster proteins to pleiotropic drug response elements (PDREs) to fine tune the regulation of multidrug resistance genes 1.67026789199385 958.675170898438 1047.01470947266 PDR1 6357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 42493 // response to drug // traceable author statement 5634 // nucleus // inferred from physical interaction 3677 // DNA binding // traceable author statement /// 3677 // DNA binding // inferred from physical interaction /// 16563 // transcriptional activator activity // traceable author statement 1038.95739746094 1027.73132324219 889.619018554688 1055.07202148438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL013C /GEN=PDR1 /DB_XREF=GI:6321425 /SEG=NC_001139:-469095,472301 /DEF=general positive regulator of permeability genes /NOTE=Pdr1p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 8798494]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 11421285]; go_function: DNA binding [goid GO:0003677] [evidence IPI] [pmid 8798494]; go_function: transcriptional activator activity [goid GO:0016563] [evidence TAS] [pmid 11421285]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence TAS] [pmid 11421285]; go_process: response to drug [goid GO:0042493] [evidence TAS] [pmid 11421285] --- --- --- --- --- --- S0002981 // PDR1 SGDID:S0002981, Chr VII from 472303-469097, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019331 // cdna:Genscan chromosome:SGD1:VII:469097:472303:-1 // ensembl // 11 // --- /// GENEFINDER00000021608 // cdna:GeneFinder chromosome:SGD1:VII:469097:470545:-1 // ensembl // 11 // --- /// YGL013C // cdna:known chromosome:SGD1:VII:469097:472303:-1 gene:YGL013C // ensembl // 11 // --- --- No cerevisiae_gene -1.67026789199385 -1.01092316052345 -1.11914976513163 -1.16786779035915 1.01551037998557 Max fold change below threshold 4 1.67026789199385 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779410_at YER185W.S1 Hypothetical protein 1.66992756504115 95.3301696777344 93.744571685791 --- --- 16021 // integral to membrane // inferred from sequence similarity --- 84.5327072143555 88.7552719116211 101.905067443848 102.956436157227 0.000732421991415322 0.00195312988944352 0.00415039015933871 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER185W /GEN=FAU1 /DB_XREF=GI:6321033 /SEG=NC_001137:+559449,560360 /DEF=Hypothetical ORF /NOTE=Yer185wp; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 12524434]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000987 // span:20-42,78-97,112-134,147-169,184-206,227-246,266-288 // numtm:7 S0000987 // YER185W SGDID:S0000987, Chr V from 559449-560360, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000019756 // cdna:GeneFinder chromosome:SGD1:V:559449:560360:1 // ensembl // 11 // --- /// YER185W // cdna:known chromosome:SGD1:V:559449:560360:1 gene:YER185W // ensembl // 11 // --- --- No cerevisiae_gene 1.66992756504115 1.04995184510722 -1.22388064152859 1.20551051542026 1.21794793459238 Max fold change below threshold 4 1.66992756504115 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772574_at YDR504C.S1 Protein required for survival at high temperature during stationary phase; not required for growth on nonfermentable carbon sources 1.66959908819507 2490.73602294922 2005.79528808594 SPG3 --- --- --- 2036.91149902344 3098.85620117188 1882.61584472656 1974.67907714844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR504C /GEN=LPP1 /DB_XREF=GI:6320712 /SEG=NC_001136:-1456299,1456682 /DEF=Protein required for survival at high temperature during stationary phase /NOTE=Ydr504cp --- --- --- --- --- S0002912 // span:21-50,65-84 // numtm:2 S0002912 // SPG3 SGDID:S0002912, Chr IV from 1456684-1456301, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDR504C // cdna:known chromosome:SGD1:IV:1456301:1456684:-1 gene:YDR504C // ensembl // 11 // --- --- No cerevisiae_gene -1.66959908819507 1.52135043798298 -1.18561931712692 -1.08195811945866 -1.03151520801287 Max fold change below threshold 4 1.66959908819507 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777664_at YCR020C-A.S1 Non-catalytic subunit of N-terminal acetyltransferase of the NatC type; required for replication of dsRNA virus; member of the Sm protein family 1.66946718450898 435.824417114258 280.829574584961 MAK31 6474 // N-terminal protein amino acid acetylation // inferred from direct assay --- 4042 // amino-acid N-acetyltransferase activity // inferred from direct assay 268.675750732422 426.698486328125 444.950347900391 292.9833984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR020C-A /GEN=MAK31 /DB_XREF=GI:6319867 /SEG=NC_001135:-154827,155093 /DEF=Like Sm protein; member of the Sm protein family, though slightly divergent because Mak31/Lsm9p does not contain a glycine or cysteine at amino acid 107. /NOTE=Mak31p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: amino-acid N-acetyltransferase activity [goid GO:0004042] [evidence IDA] [pmid 11274203]; go_process: N-terminal protein amino acid acetylation [goid GO:0006474] [evidence IDA] [pmid 11274203]; go_process: host-pathogen interaction [goid GO:0030383] [evidence TAS] [pmid 11274203] --- --- --- --- --- --- S0000614 // MAK31 SGDID:S0000614, Chr III from 155093-154827, reverse complement, Verified ORF // sgd // 11 // --- /// YCR020C-A // cdna:known chromosome:SGD1:III:154827:155093:-1 gene:YCR020C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.66946718450898 1.58815406736531 1.30166707803425 1.65608673908024 1.09047205651725 Max fold change below threshold 4 1.66946718450898 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770778_at YCL039W.S1 Protein of unknown function, involved in proteasome-dependent catabolite inactivation of fructose-1,6-bisphosphatase; contains six WD40 repeats; computational analysis suggests that Gid7p and Moh1p have similar functions 1.66892960486672 1164.72387695313 736.355590820313 GID7 45721 // negative regulation of gluconeogenesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 712.26708984375 1140.72412109375 1188.7236328125 760.444091796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL039W /GEN=GID7 /DB_XREF=GI:6319810 /SEG=NC_001135:+52645,54882 /DEF=Protein of unknown function, involved in proteasome-dependent catabolite inactivation of fructose-1,6-bisphosphatase; contains six WD40 repeats; computational analysis suggests that Gid7p and Moh1p have similar functions /NOTE=Gid7p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: negative regulation of gluconeogenesis [goid GO:0045721] [evidence IMP] [pmid 12686616] --- --- --- --- --- --- S0000544 // GID7 SGDID:S0000544, Chr III from 52645-54882, Verified ORF // sgd // 11 // --- /// GENSCAN00000022435 // cdna:Genscan chromosome:SGD1:III:52645:54882:1 // ensembl // 11 // --- /// GENEFINDER00000023330 // cdna:GeneFinder chromosome:SGD1:III:52645:54882:1 // ensembl // 11 // --- /// YCL039W // cdna:known chromosome:SGD1:III:52645:54882:1 gene:YCL039W // ensembl // 11 // --- --- No cerevisiae_gene -1.02096659767651 1.60153983998333 -1.15406932673197 1.66892960486672 1.06763895544253 Max fold change below threshold 4 1.66892960486672 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772718_at YKL080W.S1 Subunit C of the eight-subunit V1 peripheral membrane domain of vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; required for the V1 domain to assemble onto the vacuolar membrane 1.66890972046773 2664.67700195313 3782.54333496094 VMA5 7035 // vacuolar acidification // traceable author statement 221 // hydrogen-transporting ATPase V1 domain // traceable author statement /// 329 // vacuolar membrane (sensu Fungi) // traceable author statement 46961 // hydrogen-transporting ATPase activity, rotational mechanism // traceable author statement 4185.01318359375 2821.72094726563 2507.63305664063 3380.07348632813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL080W /GEN=VMA5 /DB_XREF=GI:6322770 /SEG=NC_001143:+284675,285853 /DEF=42 kDa subunit of V1 sector /NOTE=Vma5p; go_component: hydrogen-transporting ATPase V1 domain [goid GO:0000221] [evidence TAS] [pmid 9442887]; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence TAS] [pmid 11717306]; go_function: hydrogen-transporting ATPase activity, rotational mechanism [goid GO:0046961] [evidence TAS] [pmid 9442887]; go_process: vacuolar acidification [goid GO:0007035] [evidence TAS] [pmid 9442887] --- --- --- --- --- --- S0001563 // VMA5 SGDID:S0001563, Chr XI from 284675-285853, Verified ORF // sgd // 11 // --- /// GENSCAN00000018357 // cdna:Genscan chromosome:SGD1:XI:284987:285853:1 // ensembl // 11 // --- /// GENEFINDER00000023126 // cdna:GeneFinder chromosome:SGD1:XI:284987:285853:1 // ensembl // 11 // --- /// YKL080W // cdna:known chromosome:SGD1:XI:284675:285853:1 gene:YKL080W // ensembl // 11 // --- --- No cerevisiae_gene -1.21636520700785 -1.48314211851786 -1.38577189229278 -1.66890972046773 -1.23814266184492 Max fold change below threshold 4 1.66890972046773 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775505_at YLR241W.S1 Hypothetical protein 1.66865232942913 1464.64837646484 1567.41790771484 --- --- --- --- 1567.50158691406 1325.27697753906 1604.01977539063 1567.33422851563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR241W /GEN=VPS34 /DB_XREF=GI:6323270 /SEG=NC_001144:+620475,622823 /DEF=Hypothetical ORF /NOTE=Ylr241wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004231 // span:33-55,117-139,180-202,439-461,481-503,533-555,579-601,622-644,649-671,684-706,710-732 // numtm:11 S0004231 // YLR241W SGDID:S0004231, Chr XII from 620475-622823, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018007 // cdna:Genscan chromosome:SGD1:XII:620475:622823:1 // ensembl // 11 // --- /// GENEFINDER00000024771 // cdna:GeneFinder chromosome:SGD1:XII:620817:622823:1 // ensembl // 11 // --- /// YLR241W // cdna:known chromosome:SGD1:XII:620475:622823:1 gene:YLR241W // ensembl // 11 // --- --- No cerevisiae_gene -1.66865232942913 -1.18277281917686 1.23942204379684 1.02329706635159 -1.00010677901075 Max fold change below threshold 4 1.66865232942913 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779191_at YBR283C.S1 Subunit of the Ssh1 translocon complex; Sec61p homolog involved in co-translational pathway of protein translocation; not essential 1.6685125488226 1324.95599365234 2233.39758300781 SSH1 6613 // cotranslational protein-membrane targeting // traceable author statement 5784 // translocon complex // traceable author statement /// 5789 // endoplasmic reticulum membrane // inferred from direct assay /// 42175 // nuclear envelope-endoplasmic reticulum network // inferred from direct assay 8565 // protein transporter activity // traceable author statement 2197.47094726563 1332.88806152344 1317.02392578125 2269.32421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR283C /GEN=SSH1 /DB_XREF=GI:6319760 /SEG=NC_001134:-768901,770373 /DEF=SEC61 homolog involved in co-translational pathway of protein transport /NOTE=Ssh1p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 11702951]; go_component: nuclear envelope-endoplasmic reticulum network [goid GO:0042175] [evidence IDA] [pmid 12206772]; go_component: translocon [goid GO:0005784] [evidence TAS] [pmid 10921929]; go_function: protein transporter activity [goid GO:0008565] [evidence TAS] [pmid 10921929]; go_process: cotranslational membrane targeting [goid GO:0006613] [evidence TAS] [pmid 10921929] --- --- --- --- scop // a.4.5.Plant O-methyltransferase, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Plant O-methyltransferase, N-terminal domain // 9.5 S0000487 // span:33-52,122-141,145-167,174-196,246-268,288-310,360-382,418-440,450-469 // numtm:9 S0000487 // SSH1 SGDID:S0000487, Chr II from 770411-768939, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000022375 // cdna:GeneFinder chromosome:SGD1:II:768819:770411:-1 // ensembl // 10 // --- /// YBR283C // cdna:known chromosome:SGD1:II:768939:770411:-1 gene:YBR283C // ensembl // 10 // --- --- No cerevisiae_gene 1.08339320736807 -1.64865378474019 -1.06940439503149 -1.6685125488226 1.03269816676019 Max fold change below threshold 4 1.6685125488226 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776148_at SPBC14C8.04.S1 --- 1.66841365157247 --- --- --- --- 0.954046487808228 0.892802178859711 1.26281785964966 0.773241102695465 0.805419981479645 0.805419981479645 0.753906011581421 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14C8.04 /DEF=acetolactate synthase (small subunit) (predicted) --- --- --- --- --- --- SPBC14C8.04 // |||acetolactate synthase regulatory unit|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.59478986129246 -1.06859784888377 1.66841365157247 1.32364394794931 -1.2338279541562 Max fold change below threshold 0 1.66841365157247 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775932_at YJL003W.S1 Mitochondrial inner membrane protein, required for assembly of cytochrome c oxidase 1.66823906084325 406.519195556641 410.230361938477 COX16 6461 // protein complex assembly // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay --- 361.668151855469 306.174530029297 506.863861083984 458.792572021484 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL003W /GEN=COX16 /DB_XREF=GI:6322457 /SEG=NC_001142:+432559,432915 /DEF=Mitochondrial inner membrane protein, required for assembly of cytochrome c oxidase /NOTE=Cox16p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 12446688]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 12446688]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP] [pmid 12446688] --- --- --- --- --- S0003540 // span:33-55 // numtm:1 S0003540 // COX16 SGDID:S0003540, Chr X from 432559-432915, Verified ORF // sgd // 11 // --- /// YJL003W // cdna:known chromosome:SGD1:X:432559:432915:1 gene:YJL003W // ensembl // 11 // --- --- No cerevisiae_gene -1.31410693692895 -1.18124832859501 1.66823906084325 1.40146114188827 1.26854568108289 Max fold change below threshold 4 1.66823906084325 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776744_at YDR335W.S1 Karyopherin involved in nuclear import and export; shown to be responsible for nuclear import of replication protein A and for export of several proteins including Swi6p, Far1p, and Pho4p; cargo dissociation involves binding to RanGTP 1.66805356671588 1674.78442382813 1080.63549804688 MSN5 6611 // protein-nucleus export // inferred from direct assay 5634 // nucleus // inferred from direct assay 5515 // protein binding // inferred from physical interaction /// 8262 // importin-alpha export receptor activity // inferred from sequence similarity /// 8262 // importin-alpha export receptor activity // inferred from direct assay 1055.52514648438 1588.89636230469 1760.67248535156 1105.74584960938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR335W /GEN=MSN5 /DB_XREF=GI:6320542 /SEG=NC_001136:+1141158,1144832 /DEF=Multicopy suppressor of snf1 mutation /NOTE=Msn5p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10545454]; go_function: importin-alpha export receptor activity [goid GO:0008262] [evidence IDA,ISS] [pmid 9214382]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12697814]; go_process: protein-nucleus export [goid GO:0006611] [evidence IDA] [pmid 12697814] --- --- --- --- --- --- S0002743 // MSN5 SGDID:S0002743, Chr IV from 1141160-1144834, Verified ORF // sgd // 11 // --- /// X93302 // S.cerevisiae mRNA for Msn5 protein. // gb // 11 // --- /// GENSCAN00000025364 // cdna:Genscan chromosome:SGD1:IV:1141160:1144834:1 // ensembl // 11 // --- /// GENEFINDER00000023738 // cdna:GeneFinder chromosome:SGD1:IV:1142066:1144834:1 // ensembl // 11 // --- /// YDR335W // cdna:known chromosome:SGD1:IV:1141160:1144834:1 gene:YDR335W // ensembl // 11 // --- --- No cerevisiae_gene -1.30756678458193 1.50531360394094 1.42274700347941 1.66805356671588 1.04757887890428 Max fold change below threshold 4 1.66805356671588 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774645_at YDR003W-A.S1 Identified by expression profiling and mass spectrometry 1.66795043149276 1552.4658203125 1008.55191040039 --- --- --- --- 1000.30731201172 1668.46301269531 1436.46862792969 1016.79650878906 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR003W-A /GEN=YRB1 /DB_XREF=GI:33438779 /SEG=NC_001136:+454779,454901 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Ydr003w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028819 // YDR003W-A SGDID:S0028819, Chr IV from 454779-454901, Uncharacterized ORF // sgd // 11 // --- /// YDR003W-A // cdna:known chromosome:SGD1:IV:454779:454901:1 gene:YDR003W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.35604151237235 1.66795043149276 -1.05213396437697 1.43602731948525 1.01648413100588 Max fold change below threshold 4 1.66795043149276 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770751_at YPL272C.S1 Hypothetical protein 1.66757215404476 460.097763061523 636.855194091797 --- --- --- --- 558.524963378906 521.513610839844 398.681915283203 715.185424804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL272C /GEN=SAM4 /DB_XREF=GI:6324983 /SEG=NC_001148:-26611,28164 /DEF=Hypothetical ORF /NOTE=Ypl272cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006193 // YPL272C SGDID:S0006193, Chr XVI from 28164-26611, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000016974 // cdna:Genscan chromosome:SGD1:XVI:26611:28164:-1 // ensembl // 10 // --- /// GENEFINDER00000020909 // cdna:GeneFinder chromosome:SGD1:XVI:26611:28164:-1 // ensembl // 10 // --- /// YPL272C // cdna:known chromosome:SGD1:XVI:26611:28164:-1 gene:YPL272C // ensembl // 10 // --- --- No cerevisiae_gene 1.66757215404476 -1.07096910180246 1.14676872906006 -1.40092876543487 1.28048963197282 Max fold change below threshold 4 1.66757215404476 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777356_at YOL102C.S1 tRNA 2'-phosphotransferase, catalyzes the final step in yeast tRNA splicing: the transfer of the 2'-PO(4) from the splice junction to NAD(+) to form ADP-ribose 1''-2''cyclic phosphate and nicotinamide 1.66657982823311 379.879028320313 595.207366943359 TPT1 6388 // tRNA splicing // traceable author statement 5634 // nucleus // traceable author statement 215 // tRNA 2'-phosphotransferase activity // traceable author statement 575.533264160156 391.830657958984 367.927398681641 614.881469726563 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL102C /GEN=TPT1 /DB_XREF=GI:6324470 /SEG=NC_001147:-125996,126688 /DEF=Gene encodes a protein implicated in the last step of tRNA splicing in yeast: transfer of the splice junction 2'-phosphate from ligated tRNA to NAD /NOTE=Tpt1p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 9582290]; go_function: tRNA 2'-phosphotransferase activity [goid GO:0000215] [evidence TAS] [pmid 9582290]; go_process: tRNA splicing [goid GO:0006388] [evidence TAS] [pmid 9582290] --- --- --- --- --- --- S0005462 // TPT1 SGDID:S0005462, Chr XV from 126688-125996, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017385 // cdna:Genscan chromosome:SGD1:XV:125996:126688:-1 // ensembl // 11 // --- /// GENEFINDER00000022649 // cdna:GeneFinder chromosome:SGD1:XV:125996:126688:-1 // ensembl // 11 // --- /// YOL102C // cdna:known chromosome:SGD1:XV:125996:126688:-1 gene:YOL102C // ensembl // 11 // --- --- No cerevisiae_gene -1.66657982823311 -1.46883163037335 1.09204502829778 -1.56425769383419 1.06836825604481 Max fold change below threshold 4 1.66657982823311 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776198_at YGL231C.S1 Hypothetical protein 1.66616034472837 1754.65014648438 2725.68469238281 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 2841.61450195313 1705.48681640625 1803.8134765625 2609.7548828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL231C /GEN=TAN1 /DB_XREF=GI:6321206 /SEG=NC_001139:-63047,63619 /DEF=Hypothetical ORF /NOTE=Ygl231cp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003200 // span:88-110,137-156 // numtm:2 S0003200 // YGL231C SGDID:S0003200, Chr VII from 63620-63048, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019176 // cdna:Genscan chromosome:SGD1:VII:63048:63620:-1 // ensembl // 11 // --- /// GENEFINDER00000021404 // cdna:GeneFinder chromosome:SGD1:VII:63048:63620:-1 // ensembl // 11 // --- /// YGL231C // cdna:known chromosome:SGD1:VII:63048:63620:-1 gene:YGL231C // ensembl // 11 // --- --- No cerevisiae_gene 1.08622073942374 -1.66616034472837 -1.08697558117002 -1.57533721688805 -1.08884344681856 Max fold change below threshold 4 1.66616034472837 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775935_at YPL271W.S1 Epsilon subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis 1.66598237546308 4677.66577148438 3117.138671875 ATP15 15986 // ATP synthesis coupled proton transport // inferred from mutant phenotype /// 15986 // ATP synthesis coupled proton transport // inferred from physical interaction /// 15986 // ATP synthesis coupled proton transport // inferred from sequence similarity 5756 // proton-transporting ATP synthase, central stalk (sensu Eukaryota) // inferred from mutant phenotype /// 5756 // proton-transporting ATP synthase, central stalk (sensu Eukaryota) // inferred from sequence similarity /// 5756 // proton-transporting ATP synthase, central stalk (sensu Eukaryota) // inferred from physical interaction 46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // inferred from physical interaction /// 46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // inferred from mutant phenotype /// 46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // inferred from sequence similarity 3375.36572265625 5623.2998046875 3732.03173828125 2858.91162109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL271W /GEN=ATP15 /DB_XREF=GI:6324984 /SEG=NC_001148:+30079,30267 /DEF=Epsilon subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis /NOTE=Atp15p; go_component: proton-transporting ATP synthase, central stalk (sensu Eukarya) [goid GO:0005756] [evidence IPI,ISS] [pmid 1985960]; go_component: proton-transporting ATP synthase, central stalk (sensu Eukarya) [goid GO:0005756] [evidence IMP] [pmid 8416924]; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism [goid GO:0046933] [evidence IPI,ISS] [pmid 1985960]; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism [goid GO:0046933] [evidence IMP] [pmid 8416924]; go_process: ATP synthesis coupled proton transport [goid GO:0015986] [evidence IPI,ISS] [pmid 1985960]; go_process: ATP synthesis coupled proton transport [goid GO:0015986] [evidence IMP] [pmid 8416924] --- --- --- --- --- --- S0006192 // ATP15 SGDID:S0006192, Chr XVI from 30079-30267, Verified ORF // sgd // 10 // --- /// GENEFINDER00000020952 // cdna:GeneFinder chromosome:SGD1:XVI:30079:30267:1 // ensembl // 10 // --- /// YPL271W // cdna:known chromosome:SGD1:XVI:30079:30267:1 gene:YPL271W // ensembl // 10 // --- --- No cerevisiae_gene -1.29697828547242 1.66598237546308 -1.06774940665777 1.10566736908862 -1.18064710281772 Max fold change below threshold 4 1.66598237546308 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769962_at YLR300W.S1 Major exo-1,3-beta-glucanase of the cell wall, involved in cell wall beta-glucan assembly; exists as three differentially glycosylated isoenzymes 1.66595778510538 1687.66748046875 1207.04748535156 EXG1 6073 // glucan metabolism // inferred from mutant phenotype /// 6073 // glucan metabolism // inferred from genetic interaction /// 7047 // cell wall organization and biogenesis // inferred from sequence similarity 9277 // cell wall (sensu Fungi) // inferred from direct assay 4338 // glucan 1,3-beta-glucosidase activity // inferred from sequence similarity 1174.64233398438 1418.43041992188 1956.90454101563 1239.45263671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR300W /GEN=EXG1 /DB_XREF=GI:6323331 /SEG=NC_001144:+728957,730303 /DEF=Major exo-1,3-beta-glucanase of the cell wall, involved in cell wall beta-glucan assembly; exists as three differentially glycosylated isoenzymes /NOTE=Exg1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 9748433]; go_function: glucan 1,3-beta-glucosidase activity [goid GO:0004338] [evidence ISS] [pmid 9748433]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence ISS] [pmid 9748433]; go_process: glucan metabolism [goid GO:0006073] [evidence IGI,IMP] [pmid 7565587] --- --- --- --- --- --- S0004291 // EXG1 SGDID:S0004291, Chr XII from 728957-730303, Verified ORF // sgd // 11 // --- /// GENSCAN00000018052 // cdna:Genscan chromosome:SGD1:XII:728957:730303:1 // ensembl // 11 // --- /// GENEFINDER00000024772 // cdna:GeneFinder chromosome:SGD1:XII:728957:730303:1 // ensembl // 11 // --- /// YLR300W // cdna:known chromosome:SGD1:XII:728957:730303:1 gene:YLR300W // ensembl // 11 // --- --- No cerevisiae_gene 1.34758855910054 1.20754239727643 -1.00318804348166 1.66595778510538 1.05517449938531 Max fold change below threshold 4 1.66595778510538 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779358_at YOL100W.S1 Serine/threonine protein kinase involved in sphingolipid-mediated signaling pathway that controls endocytosis; activates Ypk1p and Ykr2p, components of signaling cascade required for maintenance of cell wall integrity; redundant with Pkh1p 1.66522787039464 882.878692626953 1003.16519165039 PKH2 196 // MAPKKK cascade during cell wall biogenesis // inferred from genetic interaction /// 196 // MAPKKK cascade during cell wall biogenesis // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from direct assay 5634 // nucleus // inferred from direct assay 4672 // protein kinase activity // inferred from direct assay 1035.14392089844 1010.38226318359 755.375122070313 971.186462402344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL100W /GEN=PKH2 /DB_XREF=GI:6324472 /SEG=NC_001147:+129236,132481 /DEF=Pkb-activating Kinase Homologue /NOTE=Pkh2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12221112]; go_function: protein kinase activity [goid GO:0004672] [evidence IDA] [pmid 10567559]; go_process: MAPKKK cascade during cell wall biogenesis [goid GO:0000196] [evidence IGI,IMP] [pmid 10567559]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 10567559] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-68 /// hanks // 1.7.2 // AGC group; AGC VII Budding yeast DBF2/20; DBF20 // 3.0E-79 --- --- S0005460 // PKH2 SGDID:S0005460, Chr XV from 129236-132481, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022904 // cdna:GeneFinder chromosome:SGD1:XV:129236:132481:1 // ensembl // 11 // --- /// GENSCAN00000017386 // cdna:Genscan chromosome:SGD1:XV:129260:132481:1 // ensembl // 11 // --- /// YOL100W // cdna:known chromosome:SGD1:XV:129236:132481:1 gene:YOL100W // ensembl // 11 // --- YOL099C // ensembl // 8 // Negative Strand Matching Probes No cerevisiae_gene -1.66522787039464 -1.02450721733458 -1.1363095215363 -1.37037068160432 -1.06585497324364 Max fold change below threshold 4 1.66522787039464 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778254_at YEL057C.S1 Hypothetical protein 1.66511552281159 125.115673065186 226.56192779541 --- --- --- --- 205.641983032227 123.500129699707 126.731216430664 247.481872558594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL057C /GEN=PCM1 /DB_XREF=GI:6320778 /SEG=NC_001137:-45020,45721 /DEF=Hypothetical ORF /NOTE=Yel057cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000783 // YEL057C SGDID:S0000783, Chr V from 45721-45020, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// YEL057C // cdna:known chromosome:SGD1:V:45020:45721:-1 gene:YEL057C // ensembl // 10 // --- --- No cerevisiae_gene -1.09039977203227 -1.66511552281159 -1.341386624566 -1.62266242543908 1.20345986218101 Max fold change below threshold 4 1.66511552281159 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770635_at YCR017C.S1 Putative sensor/transporter protein involved in cell wall biogenesis; contains 14-16 transmembrane segments and several putative glycosylation and phosphorylation sites; null mutation is synthetically lethal with pkc1 deletion 1.66476106190311 861.099914550781 1214.17358398438 CWH43 7047 // cell wall organization and biogenesis // inferred from genetic interaction /// 7165 // signal transduction // inferred from genetic interaction 5887 // integral to plasma membrane // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay --- 1149.95849609375 690.764892578125 1031.43493652344 1278.388671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR017C /GEN=CWH43 /DB_XREF=GI:10383785 /SEG=NC_001135:-144770,147631 /DEF=Putative sensor/transporter protein involved in cell wall biogenesis; contains 14-16 transmembrane segments and several putative glycosylation and phosphorylation sites; null mutation is synthetically lethal with pkc1 deletion /NOTE=Cwh43p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 11427965]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 11427965]; go_component: integral to plasma membrane [goid GO:0005887] [evidence IDA] [pmid 11427965]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IGI] [pmid 11427965]; go_process: signal transduction [goid GO:0007165] [evidence IGI] [pmid 11427965] --- --- --- --- --- S0000610 // span:9-31,65-87,92-111,121-143,150-169,179-201,261-283,298-320,327-346,351-373,380-402,422-441,454-476,496-516,523-542,547-569,576-598,613-632,644-663 // numtm:19 S0000610 // CWH43 SGDID:S0000610, Chr III from 147631-144770, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022472 // cdna:Genscan chromosome:SGD1:III:144770:146731:-1 // ensembl // 11 // --- /// GENEFINDER00000023369 // cdna:GeneFinder chromosome:SGD1:III:144770:146590:-1 // ensembl // 11 // --- /// YCR017C // cdna:known chromosome:SGD1:III:144770:147631:-1 gene:YCR017C // ensembl // 11 // --- --- No cerevisiae_gene -1.00960222007332 -1.66476106190311 1.26738853516707 -1.11491132923014 1.1116824443817 Max fold change below threshold 4 1.66476106190311 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770637_at YKR044W.S1 Protein of unknown function that interacts with Ulp1p, a Ubl (ubiquitin-like protein)-specific protease for Smt3p protein conjugates 1.6646520027458 133.41134262085 218.347297668457 UIP5 --- 5635 // nuclear membrane // inferred from direct assay --- 188.918075561523 113.48802947998 153.334655761719 247.776519775391 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR044W /GEN=UIP5 /DB_XREF=GI:6322897 /SEG=NC_001143:+521657,522988 /DEF=Ulp1 Interacting Protein 5 /NOTE=Uip5p; go_component: nuclear membrane [goid GO:0005635] [evidence IPI] [pmid 11056382]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001752 // span:12-31,397-419 // numtm:2 S0001752 // UIP5 SGDID:S0001752, Chr XI from 521657-522988, Verified ORF // sgd // 11 // --- /// GENSCAN00000018454 // cdna:Genscan chromosome:SGD1:XI:521657:522988:1 // ensembl // 11 // --- /// GENEFINDER00000023130 // cdna:GeneFinder chromosome:SGD1:XI:521657:522988:1 // ensembl // 11 // --- /// YKR044W // cdna:known chromosome:SGD1:XI:521657:522988:1 gene:YKR044W // ensembl // 11 // --- --- No cerevisiae_gene 1.14440411810578 -1.6646520027458 1.35988469368428 -1.23206377986136 1.31155538737583 Max fold change below threshold 4 1.6646520027458 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776211_at YHR119W.S1 Histone methyltransferase, subunit of the COMPASS (Set1C) complex which methylates Rad6p ubiquitinated histone H3 on lysine 4; required in transcriptional silencing near telomeres and at the silent mating type loci; contains a SET domain 1.66399871601159 333.632888793945 520.303558349609 SET1 183 // chromatin silencing at ribosomal DNA // traceable author statement /// 723 // telomere maintenance // inferred from mutant phenotype /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 16571 // histone methylation // inferred from mutant phenotype /// 16571 // histone methylation // inferred from direct assay /// 30466 // chromatin silencing at silent mating-type cassette // inferred from mutant phenotype 48188 // COMPASS complex // inferred from physical interaction 42054 // histone methyltransferase activity // inferred from sequence similarity /// 42800 // histone lysine N-methyltransferase activity (H3-K4 specific) // inferred from mutant phenotype /// 42800 // histone lysine N-methyltransferase activity (H3-K4 specific) // inferred from direct assay 501.17236328125 301.185546875 366.080230712891 539.434753417969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR119W /GEN=SET1 /DB_XREF=GI:6321911 /SEG=NC_001140:+346045,349287 /DEF=Histone methyltransferase, subunit of the COMPASS complex, which methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres; contains a SET domain /NOTE=Set1p; go_component: COMPASS complex [goid GO:0048188] [evidence IPI] [pmid 11805083]; go_component: nucleus [goid GO:0005634] [evidence ISS] [pmid 11742990]; go_function: histone lysine N-methyltransferase activity (H3-K4 specific) [goid GO:0042800] [evidence IDA] [pmid 11742990]; go_function: histone lysine N-methyltransferase activity (H3-K4 specific) [goid GO:0042800] [evidence IMP,ISS] [pmid 12845608]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 9988274]; go_process: histone methylation [goid GO:0016571] [evidence IDA] [pmid 11742990]; go_process: histone methylation [goid GO:0016571] [evidence IMP] [pmid 11752412] --- --- --- --- --- --- S0001161 // SET1 SGDID:S0001161, Chr VIII from 346045-349287, Verified ORF // sgd // 11 // --- /// GENSCAN00000016656 // cdna:Genscan chromosome:SGD1:VIII:346045:349287:1 // ensembl // 11 // --- /// GENEFINDER00000020133 // cdna:GeneFinder chromosome:SGD1:VIII:346045:349287:1 // ensembl // 11 // --- /// YHR119W // cdna:known chromosome:SGD1:VIII:346045:349287:1 gene:YHR119W // ensembl // 11 // --- --- No cerevisiae_gene -1.28863661901453 -1.66399871601159 1.35349658661673 -1.36902329389731 1.07634577031784 Max fold change below threshold 4 1.66399871601159 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773524_at YMR281W.S1 ER membrane protein involved in the second step of glycosylphosphatidylinositol (GPI) anchor assembly, the de-N-acetylation of the N-acetylglucosaminylphosphatidylinositol intermediate; functional homolog of human PIG-Lp 1.66384919500564 1039.39465332031 791.975311279297 GPI12 6506 // GPI anchor biosynthesis // inferred from sequence similarity 5789 // endoplasmic reticulum membrane // inferred from sequence similarity 225 // N-acetylglucosaminylphosphatidylinositol deacetylase activity // inferred from sequence similarity 709.726318359375 897.911743164063 1180.87756347656 874.224304199219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR281W /GEN=GPI12 /DB_XREF=GI:6323937 /SEG=NC_001145:+832338,833252 /DEF=ER membrane protein involved in the second step of glycosylphosphatidylinositol (GPI) anchor assembly, the de-N-acetylation of the N-acetylglucosaminylphosphatidylinositol intermediate; functional homolog of human PIG-Lp /NOTE=Gpi12p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence ISS] [pmid 10085243]; go_function: N-acetylglucosaminylphosphatidylinositol deacetylase activity [goid GO:0000225] [evidence ISS] [pmid 10085243]; go_process: GPI anchor biosynthesis [goid GO:0006506] [evidence ISS] [pmid 10085243] --- --- --- --- --- S0004894 // span:21-38 // numtm:1 S0004894 // GPI12 SGDID:S0004894, Chr XIII from 832338-833252, Verified ORF // sgd // 11 // --- /// GENSCAN00000018950 // cdna:Genscan chromosome:SGD1:XIII:832344:833252:1 // ensembl // 11 // --- /// YMR281W // cdna:known chromosome:SGD1:XIII:832338:833252:1 gene:YMR281W // ensembl // 11 // --- --- No cerevisiae_gene 1.03110656582179 1.26515210150259 1.37339841329958 1.66384919500564 1.23177664627134 Max fold change below threshold 4 1.66384919500564 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774145_at YDR310C.S1 Transcriptional repressor required for repression of middle sporulation-specific genes during mitosis; regulated by the pachytene checkpoint; a dominant mutation acts as a suppressor of silencing defects of SIR2 mutations 1.66379547101716 423.019973754883 659.985717773438 SUM1 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 7088 // regulation of mitosis // inferred from physical interaction /// 7088 // regulation of mitosis // inferred from mutant phenotype /// 16481 // negative regulation of transcription // inferred from direct assay /// 30466 // chromatin silencing at silent mating-type cassette // inferred from mutant phenotype 118 // histone deacetylase complex // inferred from direct assay /// 118 // histone deacetylase complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay 16564 // transcriptional repressor activity // traceable author statement /// 16564 // transcriptional repressor activity // inferred from direct assay 624.708740234375 470.56787109375 375.472076416016 695.2626953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR310C /GEN=SUM1 /DB_XREF=GI:6320516 /SEG=NC_001136:-1081120,1084308 /DEF=Suppresor of mar1-1 (sir2) mutation /NOTE=Sum1p; go_component: histone deacetylase complex [goid GO:0000118] [evidence IDA,IPI] [pmid 11711434]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8754829]; go_function: transcriptional repressor activity [goid GO:0016564] [evidence TAS] [pmid 12192041]; go_process: chromatin silencing at silent mating-type cassette (sensu Fungi) [goid GO:0030466] [evidence IMP] [pmid 8754829]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 8754829]; go_process: regulation of mitosis [goid GO:0007088] [evidence IMP,IPI] [pmid 10562556] --- --- --- --- --- --- S0002718 // SUM1 SGDID:S0002718, Chr IV from 1084310-1081122, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023799 // cdna:GeneFinder chromosome:SGD1:IV:1081122:1084310:-1 // ensembl // 11 // --- /// GENSCAN00000025339 // cdna:Genscan chromosome:SGD1:IV:1081122:1084310:-1 // ensembl // 11 // --- /// YDR310C // cdna:known chromosome:SGD1:IV:1081122:1084310:-1 gene:YDR310C // ensembl // 11 // --- --- No cerevisiae_gene -1.09108880135025 -1.32756352188336 1.19678643211465 -1.66379547101716 1.11293895944477 Max fold change below threshold 4 1.66379547101716 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776166_at YKL218C.S1 3-hydroxyaspartate dehydratase, deaminates L-threo-3-hydroxyaspartate to form oxaloacetate and ammonia; required for survival in the presence of hydroxyaspartate 1.66376104219697 318.449035644531 339.843170166016 SRY1 42219 // amino acid derivative catabolism // inferred from mutant phenotype --- 30378 // serine racemase activity // inferred from direct assay /// 30848 // threo-3-hydroxyaspartate ammonia-lyase activity // inferred from direct assay 327.099822998047 228.700073242188 408.197998046875 352.586517333984 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL218C /GEN=SRY1 /DB_XREF=GI:6322631 /SEG=NC_001143:-17359,18339 /DEF=3-hydroxyaspartate dehydratase, deaminates L-threo-3-hydroxyaspartate to form oxaloacetate and ammonia; required for survival in the presence of hydroxyaspartate /NOTE=Sry1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: serine racemase activity [goid GO:0030378] [evidence IDA] [pmid 12951240]; go_function: threo-3-hydroxyaspartate ammonia-lyase activity [goid GO:0030848] [evidence IDA] [pmid 12951240]; go_process: amino acid derivative catabolism [goid GO:0042219] [evidence IMP] [pmid 12951240] --- --- --- --- --- --- S0001701 // SRY1 SGDID:S0001701, Chr XI from 18339-17359, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018254 // cdna:Genscan chromosome:SGD1:XI:17359:18339:-1 // ensembl // 11 // --- /// GENEFINDER00000023094 // cdna:GeneFinder chromosome:SGD1:XI:17359:18339:-1 // ensembl // 11 // --- /// YKL218C // cdna:known chromosome:SGD1:XI:17359:18339:-1 gene:YKL218C // ensembl // 11 // --- --- No cerevisiae_gene -1.66376104219697 -1.43025674789206 1.6615069758034 1.24793096586088 1.07791717556536 Max fold change below threshold 4 1.66376104219697 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771408_at YLL015W.S1 ABC type transmembrane transporter of MRP/CFTR family, found in vacuolar membrane, involved in the transport of unconjugated bilirubin and in heavy metal detoxification via glutathione conjugates, along with Ycf1p 1.66359060552488 2228.94702148438 2139.88610839844 BPT1 15691 // cadmium ion transport // inferred from direct assay /// 15723 // bilirubin transport // inferred from mutant phenotype /// 15723 // bilirubin transport // inferred from genetic interaction 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay 15086 // cadmium ion transporter activity // inferred from direct assay /// 15127 // bilirubin transporter activity // inferred from mutant phenotype /// 15127 // bilirubin transporter activity // inferred from genetic interaction 2160.787109375 2095.46752929688 2362.42651367188 2118.98510742188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL015W /GEN=BPT1 /DB_XREF=GI:6323014 /SEG=NC_001144:+116431,121110 /DEF=ABC type transmembrane transporter of MRP/CFTR family, found in vacuolar membrane, involved in the transport of unconjugated bilirubin and in heavy metal detoxification via glutathione conjugates, along with Ycf1p /NOTE=Bpt1p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 12455987]; go_function: bilirubin transporter activity [goid GO:0015127] [evidence IGI,IMP] [pmid 10790694]; go_function: cadmium ion transporter activity [goid GO:0015086] [evidence IDA] [pmid 12455987]; go_process: bilirubin transport [goid GO:0015723] [evidence IGI,IMP] [pmid 10790694]; go_process: cadmium ion transport [goid GO:0015691] [evidence IDA] [pmid 12455987] --- --- --- --- --- S0003938 // span:23-45,113-132,142-164,177-199,214-235,334-356,435-454,519-541,551-573,967-989,1017-1039,1093-1115,1120-1142,1204-1226 // numtm:14 S0003938 // BPT1 SGDID:S0003938, Chr XII from 116431-121110, Verified ORF // sgd // 11 // --- /// GENSCAN00000017718 // cdna:Genscan chromosome:SGD1:XII:117118:121110:1 // ensembl // 11 // --- /// GENEFINDER00000024751 // cdna:GeneFinder chromosome:SGD1:XII:117910:121647:1 // ensembl // 11 // --- /// YLL015W // cdna:known chromosome:SGD1:XII:116431:121110:1 gene:YLL015W // ensembl // 11 // --- --- No cerevisiae_gene -1.66359060552488 -1.03117184073 1.16640020590732 1.09331757090832 -1.01972736939335 Max fold change below threshold 4 1.66359060552488 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778601_at YIL098C.S1 Mitochondrial matrix protein, required for assembly or stability at high temperature of the F1 sector of mitochondrial F1F0 ATP synthase 1.66318047867335 307.582229614258 479.128707885742 FMC1 6461 // protein complex assembly // inferred from genetic interaction /// 6461 // protein complex assembly // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay --- 454.120727539063 304.498443603516 310.666015625 504.136688232422 0.00415039015933871 0.0107421996071935 0.00415039015933871 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL098C /GEN=FMC1 /DB_XREF=GI:6322093 /SEG=NC_001141:-179769,180236 /DEF=Mitochondrial matrix protein, required for assembly or stability at high temperature of the F1 sector of mitochondrial F1F0 ATP synthase /NOTE=Fmc1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11096112]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein complex assembly [goid GO:0006461] [evidence IGI,IMP] [pmid 11096112] --- --- --- --- --- --- S0001360 // FMC1 SGDID:S0001360, Chr IX from 180236-179769, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019110 // cdna:GeneFinder chromosome:SGD1:IX:179769:180236:-1 // ensembl // 11 // --- /// YIL098C // cdna:known chromosome:SGD1:IX:179769:180236:-1 gene:YIL098C // ensembl // 11 // --- GENSCAN00000016403 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.60781598976833 -1.49137290215634 1.66318047867335 -1.46176506183162 1.11013802643276 Max fold change below threshold 4 1.66318047867335 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1771422_at YDL047W.S1 Type 2A-related serine-threonine phosphatase that functions in the G1/S transition of the mitotic cycle; cytoplasmic and nuclear protein that modulates functions mediated by Pkc1p including cell wall and actin cytoskeleton organization 1.66300064835713 2060.45263671875 1590.23266601563 SIT4 82 // G1/S transition of mitotic cell cycle // inferred from genetic interaction /// 1302 // replicative cell aging // inferred from mutant phenotype /// 6281 // DNA repair // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // traceable author statement /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 7243 // protein kinase cascade // inferred from mutant phenotype /// 30036 // actin cytoskeleton organization and biogenesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4722 // protein serine/threonine phosphatase activity // traceable author statement 1514.68322753906 1826.6748046875 2294.23046875 1665.78210449219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL047W /GEN=SIT4 /DB_XREF=GI:6320156 /SEG=NC_001136:+369769,370704 /DEF=SIT4 suppress mutations in DBF2 /NOTE=Sit4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: protein serine/threonine phosphatase activity [goid GO:0004722] [evidence TAS] [pmid 9123967]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IGI] [pmid 1848673]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence IMP] [pmid 12080055]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 12080055]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 12080055]; go_process: protein kinase cascade [goid GO:0007243] [evidence IMP] [pmid 12080055] --- --- --- --- --- --- S0002205 // SIT4 SGDID:S0002205, Chr IV from 369769-370704, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023734 // cdna:GeneFinder chromosome:SGD1:IV:369769:370704:1 // ensembl // 10 // --- /// GENSCAN00000025065 // cdna:Genscan chromosome:SGD1:IV:369769:370704:1 // ensembl // 10 // --- /// YDL047W // cdna:known chromosome:SGD1:IV:369769:370704:1 gene:YDL047W // ensembl // 10 // --- --- No cerevisiae_gene 1.66300064835713 1.20597810253391 -1.13680087504538 1.51466024515072 1.09975609038638 Max fold change below threshold 4 1.66300064835713 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776093_at YDR304C.S1 Peptidyl-prolyl cis-trans isomerase (cyclophilin) of the endoplasmic reticulum, catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; transcriptionally induced in response to unfolded proteins in the ER 1.66292111267123 1784.17858886719 2300.32397460938 CPR5 --- 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay 3755 // peptidyl-prolyl cis-trans isomerase activity // inferred from sequence similarity 2361.70849609375 1420.216796875 2148.14038085938 2238.939453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR304C /GEN=CPR5 /DB_XREF=GI:6320510 /SEG=NC_001136:-1071872,1072549 /DEF=Peptidyl-prolyl cis-trans isomerase (cyclophilin) of the endoplasmic reticulum, catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; transcriptionally induced in response to unfolded proteins in the ER /NOTE=Cpr5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11914276]; go_function: peptidyl-prolyl cis-trans isomerase activity [goid GO:0003755] [evidence ISS] [pmid 8377189]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002712 // CPR5 SGDID:S0002712, Chr IV from 1072551-1071874, reverse complement, Verified ORF // sgd // 11 // --- /// X73142 // S.cerevisiae CYPD mRNA. // gb // 11 // --- /// GENEFINDER00000023582 // cdna:GeneFinder chromosome:SGD1:IV:1071874:1072551:-1 // ensembl // 11 // --- /// GENSCAN00000025334 // cdna:Genscan chromosome:SGD1:IV:1071874:1072551:-1 // ensembl // 11 // --- /// YDR304C // cdna:known chromosome:SGD1:IV:1071874:1072551:-1 gene:YDR304C // ensembl // 11 // --- --- No cerevisiae_gene -1.30410348966753 -1.66292111267123 1.12415659264151 -1.099419999334 -1.0548335698839 Max fold change below threshold 4 1.66292111267123 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775767_at YLR093C.S1 v-SNARE component of the vacuolar SNARE complex involved in vesicle fusion; inhibits ATP-dependent Ca(2+) transport activity of Pmc1p in the vacuolar membrane 1.66279170240059 2689.52014160156 1797.84387207031 NYV1 6906 // vesicle fusion // traceable author statement 5774 // vacuolar membrane // traceable author statement 5485 // v-SNARE activity // traceable author statement 1722.13659667969 2863.55444335938 2515.48583984375 1873.55114746094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR093C /GEN=NYV1 /DB_XREF=GI:9755337 /SEG=NC_001144:-326514,327416 /DEF=v-SNARE component of the vacuolar SNARE complex involved in vesicle fusion; inhibits ATP-dependent Ca(2+) transport activity of Pmc1p in the vacuolar membrane /NOTE=Nyv1p; go_component: vacuolar membrane [goid GO:0005774] [evidence TAS] [pmid 10047442]; go_function: v-SNARE activity [goid GO:0005485] [evidence TAS] [pmid 10047442]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 10047442] --- --- --- --- --- S0004083 // span:229-251 // numtm:1 S0004083 // NYV1 SGDID:S0004083, Chr XII from 327416-327401,327259-326514, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000017892 // cdna:Genscan chromosome:SGD1:XII:326514:327125:-1 // ensembl // 11 // --- /// YLR093C // cdna:known chromosome:SGD1:XII:326514:327416:-1 gene:YLR093C // ensembl // 11 // --- --- No cerevisiae_gene 1.0697141987914 1.66279170240059 1.18019480507974 1.46067730323695 1.08792249759582 Max fold change below threshold 4 1.66279170240059 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775188_at YKL170W.S1 Mitochondrial ribosomal protein of the large subunit; appears as two protein spots (YmL34 and YmL38) on two-dimensional SDS gels 1.66271015550597 652.530883789063 689.384033203125 MRPL38 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement /// 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // traceable author statement 668.374084472656 665.396362304688 639.665405273438 710.393981933594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL170W /GEN=MRPL38 /DB_XREF=GI:6322678 /SEG=NC_001143:+130639,131055 /DEF=Mitochondrial ribosomal protein of the large subunit; appears as two protein spots (YmL34 and YmL38) on two-dimensional SDS gels /NOTE=Mrpl38p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0001653 // MRPL38 SGDID:S0001653, Chr XI from 130639-131055, Verified ORF // sgd // 11 // --- /// YKL170W // cdna:known chromosome:SGD1:XI:130639:131055:1 gene:YKL170W // ensembl // 11 // --- YKL169C // ensembl // 10 // Negative Strand Matching Probes No cerevisiae_gene -1.36999804833621 -1.00447511038031 1.66271015550597 -1.04488077510921 1.06286883114879 Max fold change below threshold 4 1.66271015550597 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772497_at YBR102C.S1 Essential protein with dual roles in spliceosome assembly and exocytosis; the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, and Exo84p) mediates polarized targeting of secretory vesicles to active sites of exocytosis 1.66252542752051 199.888938903809 255.470092773438 EXO84 245 // spliceosome assembly // inferred from genetic interaction /// 245 // spliceosome assembly // inferred from physical interaction /// 245 // spliceosome assembly // inferred from mutant phenotype /// 6887 // exocytosis // inferred from genetic interaction /// 6887 // exocytosis // inferred from mutant phenotype /// 6887 // exocytosis // inferred from physical interaction 131 // incipient bud site // inferred from direct assay /// 145 // exocyst // inferred from physical interaction /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 5515 // protein binding // inferred from physical interaction 228.769134521484 191.197280883789 208.580596923828 282.171051025391 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR102C /GEN=EXO84 /DB_XREF=GI:6319578 /SEG=NC_001134:-445019,447280 /DEF=Component of the exocyst complex, which is required for exocytosis; also involved in pre-mRNA splicing; potential Cdc28p substrate /NOTE=Exo84p; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IDA] [pmid 10652251]; go_component: exocyst [goid GO:0000145] [evidence IPI] [pmid 10438536]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi to plasma membrane transport [goid GO:0006893] [evidence IMP,IPI] [pmid 10438536]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence TAS] [pmid 9700152]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IMP,IPI] [pmid 11425851]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251]; go_process: vesicle docking during exocytosis [goid GO:0006904] [evidence IMP,IPI] [pmid 10438536]; go_process: vesicle fusion [goid GO:0006906] [evidence IMP,IPI] [pmid 10438536] --- --- --- --- --- --- S0000306 // EXO84 SGDID:S0000306, Chr II from 447317-445056, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021220 // cdna:Genscan chromosome:SGD1:II:445056:447023:-1 // ensembl // 11 // --- /// GENEFINDER00000022262 // cdna:GeneFinder chromosome:SGD1:II:445056:447317:-1 // ensembl // 11 // --- /// YBR102C // cdna:known chromosome:SGD1:II:445056:447317:-1 gene:YBR102C // ensembl // 11 // --- --- No cerevisiae_gene -1.18481363775917 -1.19650830526472 1.66252542752051 -1.09679010365968 1.23343147499162 Max fold change below threshold 4 1.66252542752051 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775531_at YJL065C.S1 Subunit of ISW2/yCHRAC chromatin accessibility complex along with Itc1p, Isw2p, and Dpb4p; involved in inheritance of telomeric silencing 1.6616267166641 744.801971435547 1245.06134033203 DLS1 6348 // chromatin silencing at telomere // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 8623 // chromatin accessibility complex // inferred from physical interaction --- 1205.71484375 725.623168945313 763.980773925781 1284.40783691406 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL065C /GEN=DLS1 /DB_XREF=GI:6322397 /SEG=NC_001142:-314970,315473 /DEF=Subunit of ISW2/yCHRAC chromatin accessibility complex along with Itc1p, Isw2p, and Dpb4p; involved in inheritance of telomeric silencing /NOTE=Dls1p; go_component: chromatin accessibility complex [goid GO:0008623] [evidence IPI,ISS] [pmid 14673157]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 14673157] --- --- --- --- --- --- S0003601 // DLS1 SGDID:S0003601, Chr X from 315473-314970, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024089 // cdna:Genscan chromosome:SGD1:X:314970:315473:-1 // ensembl // 11 // --- /// GENEFINDER00000024457 // cdna:GeneFinder chromosome:SGD1:X:314970:315473:-1 // ensembl // 11 // --- /// YJL065C // cdna:known chromosome:SGD1:X:314970:315473:-1 gene:YJL065C // ensembl // 11 // --- YJL064W // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene -1.04551760404827 -1.6616267166641 1.08080779037332 -1.57820050569379 1.06526667028442 Max fold change below threshold 4 1.6616267166641 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779473_at YDR063W.S1 Hypothetical protein 1.66160802057652 1139.85150146484 1278.09826660156 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1266.25463867188 1047.87158203125 1231.83142089844 1289.94189453125 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR063W /GEN=LCB2 /DB_XREF=GI:6320268 /SEG=NC_001136:+578659,579108 /DEF=Hypothetical ORF /NOTE=Ydr063wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002470 // YDR063W SGDID:S0002470, Chr IV from 578660-579109, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023641 // cdna:GeneFinder chromosome:SGD1:IV:578660:580449:1 // ensembl // 11 // --- /// GENSCAN00000025146 // cdna:Genscan chromosome:SGD1:IV:578660:579109:1 // ensembl // 11 // --- /// YDR063W // cdna:known chromosome:SGD1:IV:578660:579109:1 gene:YDR063W // ensembl // 11 // --- --- No cerevisiae_gene -1.66160802057652 -1.20840631656152 -1.15698804895168 -1.02794474730019 1.01870655011714 Max fold change below threshold 4 1.66160802057652 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780247_at YOR229W.S1 Transcriptional repressor involved in regulation of meiosis and silencing; contains WD repeats 1.66140372625827 1057.30081176758 847.480285644531 WTM2 40020 // regulation of meiosis // inferred from genetic interaction 5634 // nucleus // inferred from direct assay 3714 // transcription corepressor activity // inferred from direct assay 827.638977050781 739.559143066406 1375.04248046875 867.321594238281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR229W /GEN=WTM2 /DB_XREF=GI:6324803 /SEG=NC_001147:+768409,769812 /DEF=WD repeat containing transcriptional modulator 2 /NOTE=Wtm2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9234739]; go_function: transcription corepressor activity [goid GO:0003714] [evidence IDA] [pmid 9234739]; go_process: regulation of meiosis [goid GO:0040020] [evidence IGI] [pmid 9234739] --- --- --- --- --- --- S0005755 // WTM2 SGDID:S0005755, Chr XV from 768409-769812, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022794 // cdna:GeneFinder chromosome:SGD1:XV:768409:769836:1 // ensembl // 11 // --- /// GENSCAN00000017649 // cdna:Genscan chromosome:SGD1:XV:768829:769836:1 // ensembl // 11 // --- /// YOR229W // cdna:known chromosome:SGD1:XV:768409:769812:1 gene:YOR229W // ensembl // 11 // --- --- No cerevisiae_gene 1.14361760222336 -1.11909775548061 -1.34612823404937 1.66140372625827 1.04794677182666 Max fold change below threshold 4 1.66140372625827 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771281_at SPAC186.09.S1 --- 1.66039092401347 --- --- --- --- 0.736505925655365 0.956718862056732 1.22288775444031 0.880602896213531 0.904784977436066 0.919434010982513 0.805419981479645 0.805419981479645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC186.09 /DEF=pyruvate decarboxylase (predicted) --- --- --- --- --- --- SPAC186.09 // |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.29334588487259 1.29899682912315 1.13603256710082 1.66039092401347 1.19564943816296 Max fold change below threshold 0 1.66039092401347 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771544_at YDR395W.S1 Nuclear transport factor (karyopherin) involved in protein transport between the cytoplasm and nucleoplasm; similar to Nmd5p, Cse1p, Lph2p, and the human cellular apoptosis susceptibility protein, CAS1 1.66025197173764 381.452438354492 594.808959960938 SXM1 6406 // mRNA-nucleus export // inferred from genetic interaction /// 6913 // nucleocytoplasmic transport // inferred from genetic interaction 5634 // nucleus // inferred from direct assay 8320 // protein carrier activity // inferred from genetic interaction /// 8320 // protein carrier activity // inferred from sequence similarity 597.618408203125 359.956451416016 402.948425292969 591.99951171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR395W /GEN=SXM1 /DB_XREF=GI:6320603 /SEG=NC_001136:+1263312,1266146 /DEF=Suppressor of mRNA export mutant; Importin-beta like gene /NOTE=Sxm1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9238021]; go_function: protein carrier activity [goid GO:0008320] [evidence IGI,ISS] [pmid 9238021]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IGI] [pmid 9238021]; go_process: nucleocytoplasmic transport [goid GO:0006913] [evidence IGI] [pmid 9238021] --- --- --- --- --- --- S0002803 // SXM1 SGDID:S0002803, Chr IV from 1263314-1266148, Verified ORF // sgd // 11 // --- /// GENSCAN00000025414 // cdna:Genscan chromosome:SGD1:IV:1263314:1266148:1 // ensembl // 11 // --- /// GENEFINDER00000023751 // cdna:GeneFinder chromosome:SGD1:IV:1263785:1266148:1 // ensembl // 11 // --- /// YDR395W // cdna:known chromosome:SGD1:IV:1263314:1266148:1 gene:YDR395W // ensembl // 11 // --- --- No cerevisiae_gene 1.05669742160962 -1.66025197173764 -1.0738864659473 -1.48311389421269 -1.00949138702507 Max fold change below threshold 4 1.66025197173764 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772183_at YML030W.S1 Hypothetical protein 1.66022585441391 1324.36520385742 1171.20611572266 --- --- 5739 // mitochondrion // inferred from direct assay --- 1092.271484375 835.313049316406 1813.41735839844 1250.14074707031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML030W /GEN=NDC1 /DB_XREF=GI:6323611 /SEG=NC_001145:+216435,216914 /DEF=Hypothetical ORF /NOTE=Yml030wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004492 // span:32-54,64-86 // numtm:2 S0004492 // YML030W SGDID:S0004492, Chr XIII from 216435-216914, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018692 // cdna:Genscan chromosome:SGD1:XIII:216435:216914:1 // ensembl // 11 // --- /// GENEFINDER00000021970 // cdna:GeneFinder chromosome:SGD1:XIII:216435:216914:1 // ensembl // 11 // --- /// YML030W // cdna:known chromosome:SGD1:XIII:216435:216914:1 gene:YML030W // ensembl // 11 // --- --- No cerevisiae_gene -1.06520269699175 -1.30761932340083 1.42551795462795 1.66022585441391 1.14453298923724 Max fold change below threshold 4 1.66022585441391 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773092_at YPL105C.S1 Hypothetical protein 1.65990429610022 1713.3740234375 1112.19177246094 --- --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 1080.42492675781 1633.34606933594 1793.40197753906 1143.95861816406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL105C /GEN=SSE1 /DB_XREF=GI:6325152 /SEG=NC_001148:-352858,355407 /DEF=Hypothetical ORF /NOTE=Ypl105cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006026 // YPL105C SGDID:S0006026, Chr XVI from 355409-352860, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017110 // cdna:Genscan chromosome:SGD1:XVI:352860:353645:-1 // ensembl // 11 // --- /// GENEFINDER00000020810 // cdna:GeneFinder chromosome:SGD1:XVI:352860:355310:-1 // ensembl // 11 // --- /// YPL105C // cdna:known chromosome:SGD1:XVI:352860:355409:-1 gene:YPL105C // ensembl // 11 // --- --- No cerevisiae_gene 1.11044769643924 1.51176266752504 1.05341029174516 1.65990429610022 1.05880435542792 Max fold change below threshold 4 1.65990429610022 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778354_at YER071C.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.65963292175713 175.480995178223 97.2046928405762 --- --- 5737 // cytoplasm // inferred from direct assay --- 107.143333435059 177.818603515625 173.14338684082 87.2660522460938 0.014160200022161 0.00585938012227416 0.00292969006113708 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER071C /GEN=RNR1 /DB_XREF=GI:6320915 /SEG=NC_001137:-301945,302325 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Yer071cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000873 // YER071C SGDID:S0000873, Chr V from 302325-301945, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// YER071C // cdna:known chromosome:SGD1:V:301945:302325:-1 gene:YER071C // ensembl // 10 // --- --- No cerevisiae_gene 1.15943236621151 1.65963292175713 -1.0684818683985 1.6159977601011 -1.22777793514608 Max fold change below threshold 4 1.65963292175713 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1778052_at YKR064W.S1 Hypothetical protein 1.65961669740964 389.724685668945 694.954864501953 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 640.500671386719 385.932891845703 393.516479492188 749.409057617188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR064W /GEN=LAS1 /DB_XREF=GI:6322917 /SEG=NC_001143:+562189,564780 /DEF=Hypothetical ORF /NOTE=Ykr064wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001772 // YKR064W SGDID:S0001772, Chr XI from 562189-564780, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022983 // cdna:GeneFinder chromosome:SGD1:XI:562189:564780:1 // ensembl // 11 // --- /// GENSCAN00000018471 // cdna:Genscan chromosome:SGD1:XI:563806:564780:1 // ensembl // 11 // --- /// YKR064W // cdna:known chromosome:SGD1:XI:562189:564780:1 gene:YKR064W // ensembl // 11 // --- --- No cerevisiae_gene -1.25191980503195 -1.65961669740964 1.00302878902851 -1.62763366914964 1.17003633422378 Max fold change below threshold 4 1.65961669740964 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769626_at YMR291W.S1 Hypothetical protein 1.6595720527439 3826.048828125 2370.37219238281 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4672 // protein kinase activity // inferred from sequence similarity 2436.65258789063 4043.80053710938 3608.29711914063 2304.091796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR291W /GEN=HAS1 /DB_XREF=GI:6323948 /SEG=NC_001145:+852629,854389 /DEF=Hypothetical ORF /NOTE=Ymr291wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 9020587]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 7.0E-48 /// hanks // 2.1.14 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; MLCK-K // 2.0E-63 --- --- S0004905 // YMR291W SGDID:S0004905, Chr XIII from 852629-854389, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018959 // cdna:Genscan chromosome:SGD1:XIII:852629:854389:1 // ensembl // 11 // --- /// GENEFINDER00000022015 // cdna:GeneFinder chromosome:SGD1:XIII:852629:854389:1 // ensembl // 11 // --- /// YMR291W // cdna:known chromosome:SGD1:XIII:852629:854389:1 gene:YMR291W // ensembl // 11 // --- --- No cerevisiae_gene 1.21950289408507 1.6595720527439 1.09809139375278 1.48084184716061 -1.05753277330157 Max fold change below threshold 4 1.6595720527439 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777386_at YCR077C.S1 Topoisomerase II-associated deadenylation-dependent mRNA-decapping factor; also required for faithful chromosome transmission, maintenance of rDNA locus stability, and protection of mRNA 3'-UTRs from trimming; functionally linked to Pab1p 1.6591597162007 1589.39770507813 1236.36810302734 PAT1 6446 // regulation of translational initiation // inferred from mutant phenotype /// 6446 // regulation of translational initiation // inferred from genetic interaction /// 7059 // chromosome segregation // inferred from mutant phenotype 932 // cytoplasmic mRNA processing body // inferred from direct assay /// 932 // cytoplasmic mRNA processing body // inferred from mutant phenotype /// 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // inferred from direct assay --- 1173.68444824219 1288.171875 1890.62353515625 1299.0517578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR077C /GEN=PAT1 /DB_XREF=GI:10383807 /SEG=NC_001135:-250234,252624 /DEF=Topoisomerase II-associated deadenylation-dependent mRNA-decapping factor; also required for faithful chromosome transmission, maintenance of rDNA locus stability, and protection of mRNA 3'-UTRs from trimming; functionally linked to Pab1p /NOTE=Pat1p; go_component: cytoplasmic mRNA processing body [goid GO:0000932] [evidence IDA,IMP] [pmid 12730603]; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence IDA] [pmid 10779343]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromosome segregation [goid GO:0007059] [evidence IMP] [pmid 8972867]; go_process: regulation of translational initiation [goid GO:0006446] [evidence IGI,IMP] [pmid 10779343] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 1.20000004768372 --- S0000673 // PAT1 SGDID:S0000673, Chr III from 252624-250234, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022513 // cdna:Genscan chromosome:SGD1:III:250234:252624:-1 // ensembl // 11 // --- /// GENEFINDER00000023375 // cdna:GeneFinder chromosome:SGD1:III:250234:252624:-1 // ensembl // 11 // --- /// YCR077C // cdna:known chromosome:SGD1:III:250234:252624:-1 gene:YCR077C // ensembl // 11 // --- --- No cerevisiae_gene 1.6591597162007 1.09754532142713 1.37256723290694 1.61084483822531 1.10681517486073 Max fold change below threshold 4 1.6591597162007 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769637_at YBL018C.S1 Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends 1.65900857719315 198.229881286621 166.607490539551 POP8 6364 // rRNA processing // traceable author statement /// 8033 // tRNA processing // traceable author statement 172 // ribonuclease MRP complex // inferred from direct assay /// 5655 // nucleolar ribonuclease P complex // inferred from direct assay 171 // ribonuclease MRP activity // inferred from direct assay /// 4526 // ribonuclease P activity // inferred from direct assay 143.860260009766 202.981674194336 193.478088378906 189.354721069336 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL018C /GEN=POP8 /DB_XREF=GI:6319453 /SEG=NC_001134:-185963,186439 /DEF=Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends /NOTE=Pop8p; go_component: nucleolar ribonuclease P complex [goid GO:0005655] [evidence IDA] [pmid 9620854]; go_component: ribonuclease MRP complex [goid GO:0000172] [evidence IDA] [pmid 9620854]; go_function: ribonuclease MRP activity [goid GO:0000171] [evidence IDA] [pmid 9620854]; go_function: ribonuclease P activity [goid GO:0004526] [evidence IDA] [pmid 9620854]; go_process: rRNA processing [goid GO:0006364] [evidence TAS] [pmid 9620854]; go_process: tRNA processing [goid GO:0008033] [evidence TAS] [pmid 9620854] --- --- --- --- --- --- S0000114 // POP8 SGDID:S0000114, Chr II from 186477-186431,186355-186001, reverse complement, intron sequence removed, Verified ORF // sgd // 10 // --- /// YBL018C // cdna:known chromosome:SGD1:II:186001:186477:-1 gene:YBL018C // ensembl // 10 // --- --- No cerevisiae_gene 1.11333443501323 1.41096418274621 1.65900857719315 1.3449029521132 1.31624064252687 Max fold change below threshold 4 1.65900857719315 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769994_at YGR104C.S1 subunit of RNA polymerase II holoenzyme/mediator complex 1.65884062666656 103.90047454834 181.334022521973 SRB5 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from direct assay 160.543441772461 96.7805099487305 111.020439147949 202.124603271484 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR104C /GEN=SRB5 /DB_XREF=GI:6321541 /SEG=NC_001139:-697447,698370 /DEF=subunit of RNA polymerase II holoenzyme/mediator complex /NOTE=Srb5p; go_component: mediator complex [goid GO:0000119] [evidence IDA] [pmid 9420330]; go_function: RNA polymerase II transcription mediator activity [goid GO:0016455] [evidence IDA] [pmid 9420330]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IDA] [pmid 9420330] --- --- --- --- --- --- S0003336 // SRB5 SGDID:S0003336, Chr VII from 698372-697449, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019420 // cdna:Genscan chromosome:SGD1:VII:697449:698372:-1 // ensembl // 11 // --- /// GENEFINDER00000021593 // cdna:GeneFinder chromosome:SGD1:VII:697449:698372:-1 // ensembl // 11 // --- /// YGR104C // cdna:known chromosome:SGD1:VII:697449:698372:-1 gene:YGR104C // ensembl // 11 // --- --- No cerevisiae_gene 1.2045819106343 -1.65884062666656 1.18728692780174 -1.44607103885183 1.25900255432394 Max fold change below threshold 4 1.65884062666656 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779233_s_at YGL135W.S1 N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl1Bp and has similarity to E. coli L1 and rat L10a ribosomal proteins; rpl1a rpl1b double null mutation is lethal /// N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl1Bp and has similarity to E. coli L1 and rat L10a ribosomal proteins; rpl1a rpl1b double null mutation is lethal 1.65777709205423 5399.26586914063 6595.6064453125 RPL1A /// RPL1B 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 7790.96142578125 6098.88818359375 4699.6435546875 5400.25146484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL135W /GEN=RPL1B /DB_XREF=GI:6321303 /SEG=NC_001139:+254644,255297 /DEF=N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl1Bp and has similarity to E. coli L1 and rat L10a ribosomal proteins; rpl1a rpl1b double null mutation is lethal /NOTE=Rpl1bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0003103 // RPL1B SGDID:S0003103, Chr VII from 254646-255299, Verified ORF // sgd // 11 // --- /// S0006141 // RPL1A SGDID:S0006141, Chr XVI from 135789-136442, Verified ORF // sgd // 11 // --- /// GENSCAN00000019248 // cdna:Genscan chromosome:SGD1:VII:254646:255299:1 // ensembl // 11 // --- /// GENEFINDER00000021728 // cdna:GeneFinder chromosome:SGD1:VII:254646:255299:1 // ensembl // 11 // --- /// GENSCAN00000017018 // cdna:Genscan chromosome:SGD1:XVI:135789:136442:1 // ensembl // 11 // --- /// GENEFINDER00000020908 // cdna:GeneFinder chromosome:SGD1:XVI:135789:136442:1 // ensembl // 11 // --- /// YGL135W // cdna:known chromosome:SGD1:VII:254646:255299:1 gene:YGL135W // ensembl // 11 // --- /// YPL220W // cdna:known chromosome:SGD1:XVI:135789:136442:1 gene:YPL220W // ensembl // 11 // --- --- No cerevisiae_gene -1.32028132878684 -1.27743962362505 -1.44410267391643 -1.65777709205423 -1.44270345121913 Max fold change below threshold 4 1.65777709205423 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775657_at YOR191W.S1 Member of the SWI/SNF family of DNA-dependent ATPases, plays a role in antagonizing silencing during mating-type switching, contains an N-terminal domain that interacts with Sir4p and a C-terminal SNF2 domain 1.65740434524209 365.222351074219 276.556503295898 RIS1 6333 // chromatin assembly or disassembly // inferred from genetic interaction /// 6333 // chromatin assembly or disassembly // inferred from mutant phenotype /// 6333 // chromatin assembly or disassembly // inferred from physical interaction /// 7533 // mating type switching // inferred from mutant phenotype 5634 // nucleus // inferred from physical interaction /// 5739 // mitochondrion // inferred from direct assay 8094 // DNA-dependent ATPase activity // inferred from sequence similarity 252.841430664063 311.384216308594 419.060485839844 300.271575927734 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR191W /GEN=RIS1 /DB_XREF=GI:6324765 /SEG=NC_001147:+692475,697334 /DEF=contains motifs that are present in a family of DNA-dependent ATPases, the SWI2/SNF2-like proteins /NOTE=Ris1p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 9271422]; go_function: DNA-dependent ATPase activity [goid GO:0008094] [evidence ISS] [pmid 9271422]; go_process: chromatin assembly/disassembly [goid GO:0006333] [evidence IGI,IMP,IPI] [pmid 9271422]; go_process: mating-type switching/recombination [goid GO:0007533] [evidence IMP] [pmid 9271422] --- --- --- --- --- --- S0005717 // RIS1 SGDID:S0005717, Chr XV from 692475-697334, Verified ORF // sgd // 10 // --- /// GENSCAN00000017608 // cdna:Genscan chromosome:SGD1:XV:692475:697334:1 // ensembl // 10 // --- /// GENEFINDER00000022698 // cdna:GeneFinder chromosome:SGD1:XV:692601:697334:1 // ensembl // 10 // --- /// YOR191W // cdna:known chromosome:SGD1:XV:692475:697334:1 gene:YOR191W // ensembl // 10 // --- --- No cerevisiae_gene -1.16970017664572 1.23153952851309 1.56402620219314 1.65740434524209 1.18758850216557 Max fold change below threshold 4 1.65740434524209 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769799_at YJL134W.S1 Long-chain base-1-phosphate phosphatase, regulates ceramide and long-chain base phosphates levels, involved in incorporation of exogenous long chain bases in sphingolipids 1.65730670732418 581.690399169922 914.209259033203 LCB3 19722 // calcium-mediated signaling // inferred from mutant phenotype /// 30148 // sphingolipid biosynthesis // traceable author statement 5783 // endoplasmic reticulum // inferred from direct assay 42392 // sphingosine-1-phosphate phosphatase activity // traceable author statement /// 42392 // sphingosine-1-phosphate phosphatase activity // inferred from direct assay 875.958312988281 528.543273925781 634.837524414063 952.460205078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL134W /GEN=LCB3 /DB_XREF=GI:6322327 /SEG=NC_001142:+158106,159335 /DEF=Protein involved in incorporation of exogenous long chain bases in sphingolipids /NOTE=Lcb3p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 10477278]; go_function: sphingosine-1-phosphate phosphatase activity [goid GO:0042392] [evidence TAS] [pmid 11278643]; go_function: sphingosine-1-phosphate phosphatase activity [goid GO:0042392] [evidence IDA] [pmid 9353337]; go_process: calcium-mediated signaling [goid GO:0019722] [evidence IMP] [pmid 11278643]; go_process: sphingolipid biosynthesis [goid GO:0030148] [evidence TAS] [pmid 10563329] --- --- --- --- --- S0003670 // span:81-103,113-127,183-205,210-232,316-338,385-407 // numtm:6 S0003670 // LCB3 SGDID:S0003670, Chr X from 158106-159335, Verified ORF // sgd // 11 // --- /// GENSCAN00000024035 // cdna:Genscan chromosome:SGD1:X:158106:159335:1 // ensembl // 11 // --- /// YJL134W // cdna:known chromosome:SGD1:X:158106:159335:1 gene:YJL134W // ensembl // 11 // --- --- No cerevisiae_gene 1.30349357194663 -1.65730670732418 -1.2984573440819 -1.37981495942094 1.08733508313753 Max fold change below threshold 4 1.65730670732418 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770616_at SPAC17G6.14c.S1 --- 1.65706151440142 --- --- --- --- 5.82422161102295 7.14255666732788 6.92787551879883 5.68439626693726 0.194580003619194 0.00585938012227416 0.00585938012227416 0.0952147990465164 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17G6.14c /GEN=uap56 /DEF=DEADDEAH box helicase --- --- --- --- --- --- D89270 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1777. // gb // 10 // --- /// SPAC17G6.14c // |uap56||ATP-dependent RNA helicase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.34412075550764 1.22635386225858 1.65706151440142 1.18949380389082 -1.02459809934416 Max fold change below threshold 4 1.65706151440142 Max fold change below threshold APPAPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1771484_at SPBC2G5.07c.S1 --- 1.65581391488276 --- --- --- --- 9.1319580078125 9.14174842834473 8.64401721954346 5.51508712768555 0.194580003619194 0.111571997404099 0.0805663987994194 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC2G5.07c /GEN=rpc25 /DEF=localization DNA-directed RNA polymerase III complex (subunit) --- --- --- --- --- --- SPBC2G5.07c // |rpc25||DNA-directed RNA polymerase III complex |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.19181606241445 1.00107210529482 1.1808877441217 -1.0564483822598 -1.65581391488276 Max fold change below threshold 4 1.65581391488276 Max fold change below threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779714_at YNL159C.S1 Predicted membrane protein; genetic interactions suggest a role in negative regulation of amino acid uptake 1.65554671440528 1107.84387207031 857.516021728516 ASI2 6511 // ubiquitin-dependent protein catabolism // inferred from genetic interaction 16021 // integral to membrane // inferred from sequence similarity --- 792.448669433594 1059.69677734375 1155.99096679688 922.583374023438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL159C /GEN=ASI2 /DB_XREF=GI:6324170 /SEG=NC_001146:-338478,339347 /DEF=Predicted membrane protein; genetic interactions suggest a role in negative regulation of amino acid uptake /NOTE=Asi2p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 11454748]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence IGI] [pmid 11454748] --- --- --- --- --- S0005103 // span:117-139,237-268 // numtm:2 S0005103 // ASI2 SGDID:S0005103, Chr XIV from 339347-338478, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020414 // cdna:GeneFinder chromosome:SGD1:XIV:338478:339347:-1 // ensembl // 11 // --- /// YNL159C // cdna:known chromosome:SGD1:XIV:338478:339347:-1 gene:YNL159C // ensembl // 11 // --- --- No cerevisiae_gene 1.65554671440528 1.33724343067062 1.35085534470383 1.45875816489556 1.16421846563621 Max fold change below threshold 4 1.65554671440528 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774629_at YKL126W.S1 Serine/threonine protein kinase required for receptor-mediated endocytosis; involved in sphingolipid-mediated and cell integrity signaling pathways; localized to the bud neck, cytosol and plasma membrane; homolog of mammalian kinase SGK 1.6555153999136 834.172454833984 1193.85772705078 YPK1 6468 // protein amino acid phosphorylation // inferred from sequence similarity /// 6468 // protein amino acid phosphorylation // inferred from mutant phenotype /// 6665 // sphingolipid metabolism // inferred from mutant phenotype /// 6897 // endocytosis // inferred from mutant phenotype 5829 // cytosol // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 4674 // protein serine/threonine kinase activity // inferred from sequence similarity /// 4674 // protein serine/threonine kinase activity // inferred from mutant phenotype 1210.49206542969 847.718872070313 820.626037597656 1177.22338867188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL126W /GEN=YPK1 /DB_XREF=GI:6322723 /SEG=NC_001143:+205353,207395 /DEF=76.5 kDa Serine/threonine protein kinase with similarity to protein kinase C, is 90% identical to Ypk2p /NOTE=Ypk1p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 10825204]; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 10825204]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 10825204]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence IMP,ISS] [pmid 10825204]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 11807089]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IMP,ISS] [pmid 10825204]; go_process: sphingolipid metabolism [goid GO:0006665] [evidence IMP] [pmid 10825204] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 3.0E-70 /// hanks // 1.5.2 // AGC group; AGC V Budding yeast AGC-related; YPK1 // 1.0E-149 --- --- S0001609 // YPK1 SGDID:S0001609, Chr XI from 205353-207395, Verified ORF // sgd // 11 // --- /// GENSCAN00000018323 // cdna:Genscan chromosome:SGD1:XI:205353:207395:1 // ensembl // 11 // --- /// GENEFINDER00000022959 // cdna:GeneFinder chromosome:SGD1:XI:205353:207395:1 // ensembl // 11 // --- /// YKL126W // cdna:known chromosome:SGD1:XI:205353:207395:1 gene:YKL126W // ensembl // 11 // --- --- No cerevisiae_gene -1.6555153999136 -1.4279404473719 -1.16600030077886 -1.47508366779751 -1.02826029203798 Max fold change below threshold 4 1.6555153999136 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775951_at YGR058W.S1 Hypothetical protein 1.65550817868523 203.084449768066 306.782470703125 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 276.810485839844 167.205749511719 238.963150024414 336.754455566406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR058W /GEN=LST7 /DB_XREF=GI:6321495 /SEG=NC_001139:+606138,607145 /DEF=Hypothetical ORF /NOTE=Ygr058wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003290 // YGR058W SGDID:S0003290, Chr VII from 606140-607147, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019386 // cdna:Genscan chromosome:SGD1:VII:606140:607147:1 // ensembl // 11 // --- /// GENEFINDER00000021423 // cdna:GeneFinder chromosome:SGD1:VII:606140:607147:1 // ensembl // 11 // --- /// YGR058W // cdna:known chromosome:SGD1:VII:606140:607147:1 gene:YGR058W // ensembl // 11 // --- --- No cerevisiae_gene 1.31720365500303 -1.65550817868523 1.16081228365367 -1.15838147350988 1.21655238075499 Max fold change below threshold 4 1.65550817868523 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779836_at YGR060W.S1 C-4 methyl sterol oxidase, catalyzes the first of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis; mutants accumulate the sterol intermediate 4,4-dimethylzymosterol 1.65534284895403 4012.32250976563 5520.26440429688 ERG25 6696 // ergosterol biosynthesis // inferred from direct assay 5789 // endoplasmic reticulum membrane // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 254 // C-4 methylsterol oxidase activity // inferred from direct assay 6280.41845703125 4230.6162109375 3794.02880859375 4760.1103515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR060W /GEN=ERG25 /DB_XREF=GI:6321497 /SEG=NC_001139:+610566,611495 /DEF=C-4 methyl sterol oxidase, catalyzes the first of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis; mutants accumulate the sterol intermediate 4,4-dimethylzymosterol /NOTE=Erg25p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 8663358]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 8663358]; go_function: C-4 methyl sterol oxidase activity [goid GO:0000254] [evidence IDA] [pmid 8663358]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence IDA] [pmid 8663358] --- --- --- --- --- S0003292 // span:39-61 // numtm:1 S0003292 // ERG25 SGDID:S0003292, Chr VII from 610568-611497, Verified ORF // sgd // 10 // --- /// GENEFINDER00000021448 // cdna:GeneFinder chromosome:SGD1:VII:610568:611557:1 // ensembl // 10 // --- /// YGR060W // cdna:known chromosome:SGD1:VII:610568:611497:1 gene:YGR060W // ensembl // 10 // --- --- No cerevisiae_gene -1.33002736823318 -1.48451623685324 -1.22945870654984 -1.65534284895403 -1.31938505479599 Max fold change below threshold 4 1.65534284895403 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773885_at YDL085C-A.S1 Hypothetical protein 1.6549900906197 174.566497802734 146.166641235352 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 133.103149414063 206.361968994141 142.771026611328 159.230133056641 0.00292969006113708 0.00122069998178631 0.000732421991415322 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL085C-A /GEN=LUC7 /DB_XREF=GI:12621478 /SEG=NC_001136:-302464,302670 /DEF=Hypothetical ORF /NOTE=Ydl085c-ap; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007588 // YDL085C-A SGDID:S0007588, Chr IV from 302670-302464, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023428 // cdna:GeneFinder chromosome:SGD1:IV:302464:302670:-1 // ensembl // 11 // --- /// YDL085C-A // cdna:known chromosome:SGD1:IV:302464:302670:-1 gene:YDL085C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.6549900906197 1.55039133110353 -1.53912502026895 1.07263447363811 1.19629125048951 Max fold change below threshold 4 1.6549900906197 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774770_at YDR153C.S1 Protein containing an N-terminal epsin-like domain involved in clathrin recruitment and traffic between the Golgi and endosomes; associates with the clathrin adaptor Gga2p, clathrin adaptor complex AP-1, and clathrin 1.65492393107425 3133.88330078125 2065.15399169922 ENT5 6605 // protein targeting // inferred from mutant phenotype /// 6895 // Golgi to endosome transport // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5768 // endosome // inferred from direct assay /// 30125 // clathrin vesicle coat // inferred from direct assay 30276 // clathrin binding // inferred from physical interaction 2129.64111328125 3524.39404296875 2743.37255859375 2000.66687011719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR153C /GEN=ENT5 /DB_XREF=GI:6320357 /SEG=NC_001136:-766730,767965 /DEF=Protein containing an N-terminal epsin-like domain involved in clathrin recruitment and traffic between the Golgi and endosomes; associates with the clathrin adaptor Gga2p, clathrin adaptor complex AP-1, and clathrin /NOTE=Ent5p; go_component: clathrin vesicle coat [goid GO:0030125] [evidence IDA] [pmid 12483220]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: clathrin binding [goid GO:0030276] [evidence IPI] [pmid 12483220]; go_process: Golgi to endosome transport [goid GO:0006895] [evidence IMP] [pmid 12483220] --- --- --- --- --- --- S0002560 // ENT5 SGDID:S0002560, Chr IV from 767966-766731, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023470 // cdna:GeneFinder chromosome:SGD1:IV:766731:767966:-1 // ensembl // 10 // --- /// GENSCAN00000025211 // cdna:Genscan chromosome:SGD1:IV:766731:767966:-1 // ensembl // 10 // --- /// YDR153C // cdna:known chromosome:SGD1:IV:766731:767966:-1 gene:YDR153C // ensembl // 10 // --- --- No cerevisiae_gene 1.04868663454473 1.65492393107425 -1.20309248064614 1.28818538554925 -1.06446562648209 Max fold change below threshold 4 1.65492393107425 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sc-RIP1-3_at AFFX-r2-Sc-RIP1-3 Ubiquinol-cytochrome-c reductase, a Rieske iron-sulfur protein of the mitochondrial cytochrome bc1 complex; transfers electrons from ubiquinol to cytochrome c1 during respiration 1.65477951322932 3568.97912597656 2323.01293945313 RIP1 6122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from direct assay /// 9060 // aerobic respiration // inferred from mutant phenotype 5750 // respiratory chain complex III (sensu Eukaryota) // inferred from direct assay 8121 // ubiquinol-cytochrome-c reductase activity // inferred from direct assay 2476.05004882813 4097.31689453125 3040.64135742188 2169.97583007813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=RIP1 SGD:YEL024W Rieske iron-sulfur protein of the mitochondrial cytochrome bc1 complex (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- S0000750 // RIP1 SGDID:S0000750, Chr V from 107260-107907, Verified ORF // sgd // 11 // --- /// GENSCAN00000016783 // cdna:Genscan chromosome:SGD1:V:107260:107907:1 // ensembl // 11 // --- /// GENEFINDER00000019616 // cdna:GeneFinder chromosome:SGD1:V:107302:107907:1 // ensembl // 11 // --- /// YEL024W // cdna:known chromosome:SGD1:V:107260:107907:1 gene:YEL024W // ensembl // 11 // --- --- AFFX_control cerevisiae_gene -1.09315125752425 1.65477951322932 -1.03445581350565 1.22802095977865 -1.14104959811418 Max fold change below threshold 4 1.65477951322932 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775925_at YIL136W.S1 Protein of unknown function, major constituent of the mitochondrial outer membrane; located on the outer (cytosolic) face of the outer membrane 1.65402450320684 4652.66967773438 4302.40881347656 OM45 --- 5741 // mitochondrial outer membrane // traceable author statement /// 5741 // mitochondrial outer membrane // inferred from direct assay --- 4612.73876953125 4572.65576171875 4732.68359375 3992.07885742188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL136W /GEN=OM45 /DB_XREF=GI:6322055 /SEG=NC_001141:+93619,94800 /DEF=Protein of unknown function, major constituent of the mitochondrial outer membrane; located on the outer (cytosolic) face of the outer membrane /NOTE=Om45p; go_component: mitochondrial outer membrane [goid GO:0005741] [evidence TAS] [pmid 1039]; go_component: mitochondrial outer membrane [goid GO:0005741] [evidence IDA] [pmid 11179417]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001398 // span:5-22 // numtm:1 S0001398 // OM45 SGDID:S0001398, Chr IX from 93619-94800, Verified ORF // sgd // 11 // --- /// GENSCAN00000016373 // cdna:Genscan chromosome:SGD1:IX:93619:94800:1 // ensembl // 11 // --- /// GENEFINDER00000019128 // cdna:GeneFinder chromosome:SGD1:IX:93619:94800:1 // ensembl // 11 // --- /// YIL136W // cdna:known chromosome:SGD1:IX:93619:94800:1 gene:YIL136W // ensembl // 11 // --- --- No cerevisiae_gene -1.65402450320684 -1.00876580479731 1.03199010806626 1.02600295187125 -1.15547285869754 Max fold change below threshold 4 1.65402450320684 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774458_at SPAC16E8.18.S1 --- 1.65398216896119 --- --- --- --- 3.66898465156555 5.44112730026245 4.52940607070923 2.21827340126038 0.274170011281967 0.398925989866257 0.129638999700546 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16E8.18 /DEF=dubious --- --- --- --- --- --- SPAC16E8.18 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.28605472856386 1.48300628566018 -1.0474478695349 1.23451213369795 -1.65398216896119 Max fold change below threshold 3 1.65398216896119 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776235_at YNL262W.S1 Catalytic subunit of DNA polymerase epsilon, one of the major chromosomal DNA replication polymerases characterized by processivity and proofreading exonuclease activity; also involved in DNA synthesis during DNA repair 1.65387794689976 177.64429473877 216.281967163086 POL2 731 // DNA synthesis during DNA repair // inferred from mutant phenotype /// 6272 // leading strand elongation // traceable author statement /// 6273 // lagging strand elongation // traceable author statement /// 6289 // nucleotide-excision repair // traceable author statement /// 6298 // mismatch repair // traceable author statement /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype 5657 // replication fork // inferred from direct assay /// 8622 // epsilon DNA polymerase complex // inferred from direct assay 3893 // epsilon DNA polymerase activity // traceable author statement 188.598342895508 180.882888793945 174.405700683594 243.965591430664 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL262W /GEN=POL2 /DB_XREF=GI:6324067 /SEG=NC_001146:+148211,154879 /DEF=DNA polymerase II /NOTE=Pol2p; go_component: epsilon DNA polymerase complex [goid GO:0008622] [evidence IDA] [pmid 2406268]; go_component: replication fork [goid GO:0005657] [evidence TAS] [pmid 9745046]; go_function: epsilon DNA polymerase activity [goid GO:0003893] [evidence TAS] [pmid 9745046]; go_process: DNA synthesis during DNA repair [goid GO:0000731] [evidence IMP] [pmid 10025407]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 14673157]; go_process: lagging strand elongation [goid GO:0006273] [evidence TAS] [pmid 9745046]; go_process: leading strand elongation [goid GO:0006272] [evidence TAS] [pmid 9745046]; go_process: mismatch repair [goid GO:0006298] [evidence TAS] [pmid 10072354]; go_process: nucleotide-excision repair [goid GO:0006289] [evidence TAS] [pmid 9745046] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 4.69999980926514 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 7.30000019073486 --- S0005206 // POL2 SGDID:S0005206, Chr XIV from 148211-154879, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020674 // cdna:GeneFinder chromosome:SGD1:XIV:148214:155019:1 // ensembl // 11 // --- /// GENSCAN00000019831 // cdna:Genscan chromosome:SGD1:XIV:148358:154879:1 // ensembl // 11 // --- /// YNL262W // cdna:known chromosome:SGD1:XIV:148211:154879:1 gene:YNL262W // ensembl // 11 // --- --- No cerevisiae_gene 1.65387794689976 -1.04265441663944 -1.00690012773639 -1.08137716918819 1.29357229594447 Max fold change below threshold 4 1.65387794689976 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780144_at YMR228W.S1 Mitochondrial RNA polymerase sigma-like specificity factor required for promoter recognition, interacts with mitochondrial core polymerase Rpo41p, imported into mitochondria via a novel process requiring most of the Mtf1p sequence 1.6538639915696 315.262054443359 445.457763671875 MTF1 6390 // transcription from mitochondrial promoter // traceable author statement 5759 // mitochondrial matrix // traceable author statement 3712 // transcription cofactor activity // inferred from genetic interaction /// 3712 // transcription cofactor activity // inferred from mutant phenotype /// 3712 // transcription cofactor activity // traceable author statement /// 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from sequence similarity 426.197784423828 282.025939941406 348.498168945313 464.717742919922 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR228W /GEN=MTF1 /DB_XREF=GI:6323884 /SEG=NC_001145:+724625,725650 /DEF=Mitochondrial RNA polymerase specificity factor /NOTE=Mtf1p; go_component: mitochondrial matrix [goid GO:0005759] [evidence TAS] [pmid 10447593]; go_function: S-adenosylmethionine-dependent methyltransferase activity [goid GO:0008757] [evidence ISS] [pmid 12872006]; go_function: transcription cofactor activity [goid GO:0003712] [evidence IGI,IMP,TAS] [pmid 12021282]; go_process: transcription from mitochondrial promoter [goid GO:0006390] [evidence TAS] [pmid 10447593] --- --- --- --- --- --- S0004841 // MTF1 SGDID:S0004841, Chr XIII from 724625-725650, Verified ORF // sgd // 11 // --- /// YMR228W // cdna:known chromosome:SGD1:XIII:724625:725650:1 gene:YMR228W // ensembl // 11 // --- --- No cerevisiae_gene -1.33810958287223 -1.51120065236685 1.6538639915696 -1.22295559174289 1.09038047569433 Max fold change below threshold 4 1.6538639915696 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778133_s_at YGL076C.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl7Ap and has similarity to E. coli L30 and rat L7 ribosomal proteins; contains a conserved C-terminal Nucleic acid Binding Domain (NDB2) /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl7Bp and has similarity to E. coli L30 and rat L7 ribosomal proteins; contains a conserved C-terminal Nucleic acid Binding Domain (NDB2) 1.65369665265117 4924.79833984375 6117.43237304688 RPL7B /// RPL7A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 6930.21875 5359.42138671875 4490.17529296875 5304.64599609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL076C /GEN=RPL7A /DB_XREF=GI:6321362 /SEG=NC_001139:-364336,365997 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl7Bp and has similarity to E. coli L30 and rat L7 ribosomal proteins; contains a conserved C-terminal Nucleic acid Binding Domain (NDB2) /NOTE=Rpl7ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0003044 // RPL7A SGDID:S0003044, Chr VII from 365999-365989,365529-365436,364967-364338, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0006119 // RPL7B SGDID:S0006119, Chr XVI from 173151-173161,173571-173664,174072-174701, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021743 // cdna:GeneFinder chromosome:SGD1:VII:364338:365567:-1 // ensembl // 11 // --- /// GENEFINDER00000020918 // cdna:GeneFinder chromosome:SGD1:XVI:173533:174701:1 // ensembl // 11 // --- /// YGL076C // cdna:known chromosome:SGD1:VII:364338:365999:-1 gene:YGL076C // ensembl // 11 // --- /// YPL198W // cdna:known chromosome:SGD1:XVI:173151:174701:1 gene:YPL198W // ensembl // 11 // --- GENSCAN00000017036 // ensembl // 7 // Negative Strand Matching Probes /// YPL197C // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene -1.11788665047777 -1.29309084879458 -1.65369665265117 -1.54341830726568 -1.3064432113101 Max fold change below threshold 4 1.65369665265117 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776472_at YML055W.S1 Subunit of signal peptidase complex (Spc1p, Spc2p, Spc3p, Sec11p), which catalyzes cleavage of N-terminal signal sequences of proteins targeted to the secretory pathway; homologous to mammalian SPC25 1.65368264083703 466.210037231445 430.643447875977 SPC2 6465 // signal peptide processing // inferred from mutant phenotype /// 6465 // signal peptide processing // inferred from sequence similarity /// 6465 // signal peptide processing // inferred from genetic interaction /// 6465 // signal peptide processing // inferred from physical interaction 5787 // signal peptidase complex // inferred from direct assay 5515 // protein binding // inferred from mutant phenotype 399.80517578125 406.755645751953 525.664428710938 461.481719970703 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML055W /GEN=SPC2 /DB_XREF=GI:6323586 /SEG=NC_001145:+164790,165326 /DEF=subunit of signal peptidase complex, homologous to mammalian protein SPC25 /NOTE=Spc2p; go_component: signal peptidase complex [goid GO:0005787] [evidence IDA] [pmid 1846444]; go_function: protein binding [goid GO:0005515] [evidence IMP] [pmid 10921929]; go_process: signal peptide processing [goid GO:0006465] [evidence IMP,IPI] [pmid 10921929]; go_process: signal peptide processing [goid GO:0006465] [evidence IGI,ISS] [pmid 8910564] --- --- --- --- --- S0004519 // span:36-58,68-90 // numtm:2 S0004519 // SPC2 SGDID:S0004519, Chr XIII from 164790-165326, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022103 // cdna:GeneFinder chromosome:SGD1:XIII:164790:165326:1 // ensembl // 11 // --- /// YML055W // cdna:known chromosome:SGD1:XIII:164790:165326:1 gene:YML055W // ensembl // 11 // --- --- No cerevisiae_gene 1.65368264083703 1.01738464230014 1.0432904332066 1.31480145969534 1.15426649759832 Max fold change below threshold 4 1.65368264083703 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777352_at YGL181W.S1 Protein containing a zinc-finger in the N-terminus and a long Gln-rich region in the C-terminus; regulates ultradian rhythm, cell size, cell cycle, lifespan, sporulation, heat tolerance, and multidrug transport 1.65344180669303 1113.9582824707 1572.27227783203 GTS1 74 // regulation of cell cycle // inferred from mutant phenotype /// 902 // cellular morphogenesis // inferred from mutant phenotype /// 1300 // chronological cell aging // inferred from mutant phenotype /// 6855 // multidrug transport // inferred from physical interaction /// 6855 // multidrug transport // inferred from mutant phenotype /// 7624 // ultradian rhythm // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype /// 45449 // regulation of transcription // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from physical interaction --- 1487.71484375 899.768493652344 1328.14807128906 1656.82971191406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL181W /GEN=GTS1 /DB_XREF=GI:6321257 /SEG=NC_001139:+157910,159100 /DEF=Putative zinc-finger transcription factor with gly-thr-ser repeats that homodimerizes, and regulates ultradian rhythm, cell size, cell cycle, lifespan, sporulation, heat tolerance, and multidrug transport; similar to Drosophila per protein /NOTE=Gts1p; go_component: cytoplasm [goid GO:0005737] [evidence IPI] [pmid 9914482]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11549884]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cellular morphogenesis [goid GO:0000902] [evidence IMP] [pmid 8035831]; go_process: chronological cell aging [goid GO:0001300] [evidence IMP] [pmid 8573138]; go_process: multidrug transport [goid GO:0006855] [evidence IMP,IPI] [pmid 9914482]; go_process: regulation of cell cycle [goid GO:0000074] [evidence IMP] [pmid 8035831]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 8573138]; go_process: ultradian rhythm [goid GO:0007624] [evidence IMP] [pmid 12070147] --- --- --- --- --- --- S0003149 // GTS1 SGDID:S0003149, Chr VII from 157912-159102, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021514 // cdna:GeneFinder chromosome:SGD1:VII:158347:159102:1 // ensembl // 11 // --- /// YGL181W // cdna:known chromosome:SGD1:VII:157912:159102:1 gene:YGL181W // ensembl // 11 // --- --- No cerevisiae_gene -1.50963215214641 -1.65344180669303 -1.22380057630498 -1.12014230635148 1.11367424938625 Max fold change below threshold 4 1.65344180669303 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772279_at YMR251W-A.S1 Protein of unknown function; overexpression suppresses Ca2+ sensitivity of mutants lacking inositol phosphorylceramide mannosyltransferases Csg1p and Csh1p; transcription is induced under hyperosmotic stress and repressed by alpha factor 1.653256220662 7761.01171875 7270.77172851563 HOR7 6950 // response to stress // inferred from direct assay 5624 // membrane fraction // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // traceable author statement --- 8825.6435546875 10183.68359375 5338.33984375 5715.89990234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR251W-A /GEN=HOR7 /DB_XREF=GI:6323907 /SEG=NC_001145:+774751,774930 /DEF=Protein of unknown function; transcription is induced in response to hyperosmotic stress and repressed by alpha factor /NOTE=Hor7p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence TAS] [pmid 11136466]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 9234669]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to stress [goid GO:0006950] [evidence IDA] [pmid 7500933] --- --- --- --- --- --- S0004864 // HOR7 SGDID:S0004864, Chr XIII from 774751-774930, Verified ORF // sgd // 11 // --- /// D50470 // Yeast Hor7 mRNA, complete cds. // gb // 11 // --- /// YMR251W-A // cdna:known chromosome:SGD1:XIII:774751:774930:1 gene:YMR251W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.51037669007322 1.15387433569546 -1.23278218341686 -1.653256220662 -1.54405145392218 Max fold change below threshold 4 1.653256220662 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775092_at YGR125W.S1 Hypothetical protein 1.65311503934469 821.51123046875 1300.59887695313 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 1244.17651367188 828.843078613281 814.179382324219 1357.02124023438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR125W /GEN=ASN2 /DB_XREF=GI:6321564 /SEG=NC_001139:+742328,745438 /DEF=Hypothetical ORF /NOTE=Ygr125wp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.Restriction endonuclease FokI, N-terminal (recognition) do // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Restriction endonuclease FokI, N-terminal (recognition) domain // 4.40000009536743 S0003357 // span:209-231,238-260,301-323,339-361,381-398,405-427,474-496,508-530,545-579,600-622 // numtm:10 S0003357 // YGR125W SGDID:S0003357, Chr VII from 742330-745440, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019438 // cdna:Genscan chromosome:SGD1:VII:742330:745440:1 // ensembl // 11 // --- /// GENEFINDER00000021483 // cdna:GeneFinder chromosome:SGD1:VII:742450:745440:1 // ensembl // 11 // --- /// YGR125W // cdna:known chromosome:SGD1:VII:742330:745440:1 gene:YGR125W // ensembl // 11 // --- --- No cerevisiae_gene -1.65311503934469 -1.50110020313312 1.00268938474498 -1.52813561812405 1.09069832561737 Max fold change below threshold 4 1.65311503934469 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770879_at YDR381C-A.S1 Hypothetical protein identified by homology. See FEBS Letters [2000]487:31-36. 1.65304724779946 1057.78485107422 764.935241699219 --- --- --- --- 737.194702148438 1176.29992675781 939.269775390625 792.67578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR381C-A /GEN=YRA1 /DB_XREF=GI:41629695 /SEG=NC_001136:-1238300,1238838 /DEF=Hypothetical ORF identified by homology. See FEBS Letters [2000]487:31-36. /NOTE=Ydr381c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0007650 // span:13-30 // numtm:1 S0007650 // YDR381C-A SGDID:S0007650, Chr IV from 1238840-1238815,1238620-1238302, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YDR381C-A // cdna:known chromosome:SGD1:IV:1238302:1238840:-1 gene:YDR381C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.65304724779946 1.59564348920261 1.15128432237988 1.27411357223983 1.07525973659316 Max fold change below threshold 4 1.65304724779946 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774525_at YPL249C-A.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl36Ap and has similarity to rat L36 ribosomal protein; binds to 5.8 S rRNA 1.65301460713544 2618.70056152344 3989.31164550781 RPL36B 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3723 // RNA binding // inferred from direct assay /// 3735 // structural constituent of ribosome // traceable author statement 4294.2421875 2597.82470703125 2639.57641601563 3684.38110351563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL249C-A /GEN=RPL36B /DB_XREF=GI:6325006 /SEG=NC_001148:-75699,76239 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl36Bp and has similarity to rat L36 ribosomal protein; binds to 5.8 S rRNA /NOTE=Rpl36bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 6337137]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0006438 // RPL36B SGDID:S0006438, Chr XVI from 76239-76224,75985-75699, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YPL249C-A // cdna:known chromosome:SGD1:XVI:75699:76239:-1 gene:YPL249C-A // ensembl // 11 // --- GENEFINDER00000020872 // ensembl // 7 // Cross Hyb Matching Probes /// YPL250W-A // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene 1.04735503845083 -1.65301460713544 -1.56316003464167 -1.62686791768736 -1.16552605901774 Max fold change below threshold 4 1.65301460713544 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773204_at YAL027W.S1 Hypothetical protein 1.65273720912007 280.116714477539 280.222549438477 --- --- 5634 // nucleus // inferred from direct assay --- 272.970977783203 243.558044433594 316.675384521484 287.47412109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL027W /GEN=MYO4 /DB_XREF=GI:6319292 /SEG=NC_001133:+94690,95475 /DEF=Hypothetical ORF /NOTE=Yal027wp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000025 // YAL027W SGDID:S0000025, Chr I from 94688-95473, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020355 // cdna:Genscan chromosome:SGD1:I:94727:95473:1 // ensembl // 11 // --- /// YAL027W // cdna:known chromosome:SGD1:I:94688:95473:1 gene:YAL027W // ensembl // 11 // --- GENEFINDER00000018201 // ensembl // 2 // Negative Strand Matching Probes /// YAL026C-A // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene -1.29947901495604 -1.12076354701406 1.65273720912007 1.16010642264319 1.05313071531753 Max fold change below threshold 4 1.65273720912007 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769483_at SPAC4D7.07c.S1 --- 1.65236035259426 --- --- --- --- 5.24639177322388 5.03120994567871 7.40760850906372 7.63379764556885 0.219482004642487 0.149657994508743 0.0805663987994194 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4D7.07c /DEF=sequence orphan --- --- --- --- --- --- SPAC4D7.07c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- U97383 // gb // 2 // Negative Strand Matching Probes No No -1.65236035259426 -1.04276939938274 1.20512228105643 1.41194345166331 1.45505672765988 Max fold change below threshold 4 1.65236035259426 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778306_at YKL054C.S1 RNAPII degradation factor, forms a complex with Rad26p in chromatin, enables ubiquitination and proteolysis of RNAPII 1.65223999230627 1384.06060791016 1980.35375976563 DEF1 723 // telomere maintenance // inferred from mutant phenotype /// 6511 // ubiquitin-dependent protein catabolism // inferred from direct assay /// 6511 // ubiquitin-dependent protein catabolism // inferred from mutant phenotype /// 6974 // response to DNA damage stimulus // inferred from mutant phenotype 5634 // nucleus // inferred from mutant phenotype --- 1939.89453125 1174.09973144531 1594.021484375 2020.81298828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL054C /GEN=DEF1 /DB_XREF=GI:6322796 /SEG=NC_001143:-336182,338398 /DEF=RNAPII degradation factor, forms a complex with Rad26p in chromatin, enables ubiquitination and proteolysis of RNAPII /NOTE=Def1p; go_component: nucleus [goid GO:0005634] [evidence IMP] [pmid 11859374]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to DNA damage stimulus [goid GO:0006974] [evidence IMP] [pmid 11859374]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence IDA,IMP] [pmid 11859374] --- --- --- --- --- --- S0001537 // DEF1 SGDID:S0001537, Chr XI from 338398-336182, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018376 // cdna:Genscan chromosome:SGD1:XI:336182:336829:-1 // ensembl // 11 // --- /// GENEFINDER00000023024 // cdna:GeneFinder chromosome:SGD1:XI:336182:338398:-1 // ensembl // 11 // --- /// YKL054C // cdna:known chromosome:SGD1:XI:336182:338398:-1 gene:YKL054C // ensembl // 11 // --- --- No cerevisiae_gene -1.06370403788249 -1.65223999230627 -1.22731008554771 -1.21698142105695 1.0417128125925 Max fold change below threshold 4 1.65223999230627 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771817_at YNL169C.S1 Phosphatidylserine decarboxylase of the mitochondrial inner membrane, converts phosphatidylserine to phosphatidylethanolamine 1.65107718783435 1658.58422851563 1160.62518310547 PSD1 6656 // phosphatidylcholine biosynthesis // inferred from direct assay 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay /// 5743 // mitochondrial inner membrane // traceable author statement 4609 // phosphatidylserine decarboxylase activity // traceable author statement 1129.23168945313 1499.78125 1817.38720703125 1192.01867675781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL169C /GEN=PSD1 /DB_XREF=GI:6324160 /SEG=NC_001146:-316169,317671 /DEF=Phosphatidylserine decarboxylase of the mitochondrial inner membrane, converts phosphatidylserine to phosphatidylethanolamine /NOTE=Psd1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence TAS] [pmid 12589040]; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 11602607]; go_function: phosphatidylserine decarboxylase activity [goid GO:0004609] [evidence TAS] [pmid 11602607]; go_process: phosphatidylcholine biosynthesis [goid GO:0006656] [evidence IDA] [pmid 6427211] --- --- --- --- --- --- S0005113 // PSD1 SGDID:S0005113, Chr XIV from 317671-316169, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019903 // cdna:Genscan chromosome:SGD1:XIV:316169:317671:-1 // ensembl // 11 // --- /// GENEFINDER00000020576 // cdna:GeneFinder chromosome:SGD1:XIV:316169:317611:-1 // ensembl // 11 // --- /// YNL169C // cdna:known chromosome:SGD1:XIV:316169:317671:-1 gene:YNL169C // ensembl // 11 // --- YNL170W // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene -1.65107718783435 1.3281430764012 -1.01695767518006 1.60940152849535 1.05560151020478 Max fold change below threshold 4 1.65107718783435 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772203_at YFL023W.S1 Protein involved in bud-site selection, nutrient signaling, and gene expression controlled by the TOR kinase; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern 1.65091248292094 423.513092041016 676.205047607422 BUD27 282 // bud site selection // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 646.622436523438 391.67578125 455.350402832031 705.787658691406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL023W /GEN=BUD27 /DB_XREF=GI:22532997 /SEG=NC_001138:+90984,93374 /DEF=Protein involved in bud-site selection, nutrient signaling, and gene expression controlled by the TOR kinase; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern /NOTE=Bud27p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: bud site selection [goid GO:0000282] [evidence IMP] [pmid 11452010] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 5.30000019073486 --- S0001871 // BUD27 SGDID:S0001871, Chr VI from 90984-93374, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018598 // cdna:GeneFinder chromosome:SGD1:VI:90984:93374:1 // ensembl // 11 // --- /// GENSCAN00000023223 // cdna:Genscan chromosome:SGD1:VI:90984:93374:1 // ensembl // 11 // --- /// YFL023W // cdna:known chromosome:SGD1:VI:90984:93374:1 gene:YFL023W // ensembl // 11 // --- --- No cerevisiae_gene 1.63150411043261 -1.65091248292094 -1.39684058664272 -1.42005460520469 1.09149886985993 Max fold change below threshold 4 1.65091248292094 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772342_at YDL200C.S1 DNA repair methyltransferase (6-O-methylguanine-DNA methylase) involved in protection against DNA alkylation damage 1.65025981695654 276.146743774414 199.715576171875 MGT1 6307 // DNA dealkylation // inferred from mutant phenotype 5634 // nucleus // inferred from curator 3908 // methylated-DNA-[protein]-cysteine S-methyltransferase activity // inferred from direct assay 194.027618408203 307.27099609375 245.022491455078 205.403533935547 0.00122069998178631 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL200C /GEN=MGT1 /DB_XREF=GI:6320001 /SEG=NC_001136:-100502,101122 /DEF=6-O-methylguanine-DNA methylase /NOTE=Mgt1p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 1641326]; go_function: methylated-DNA-[protein]-cysteine S-methyltransferase activity [goid GO:0003908] [evidence IDA] [pmid 2403555]; go_process: DNA dealkylation [goid GO:0006307] [evidence IMP] [pmid 1641326] --- --- --- --- scop // a.4.2.Methylated DNA-protein cysteine methyltransferase, C-termi // All alpha proteins; DNA/RNA-binding 3-helical bundle; Methylated DNA-protein cysteine methyltransferase, C-terminal domain; Methylated DNA-protein cysteine methyltransferase, C-terminal domain // 8.99633614096533E-43 --- S0002359 // MGT1 SGDID:S0002359, Chr IV from 101122-100502, reverse complement, Verified ORF // sgd // 11 // --- /// YDL200C // cdna:known chromosome:SGD1:IV:100502:101122:-1 gene:YDL200C // ensembl // 11 // --- --- No cerevisiae_gene -1.65025981695654 1.58364566145063 1.43736600325548 1.26282275412766 1.05863039303719 Max fold change below threshold 4 1.65025981695654 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776843_at YBL023C.S1 Protein involved in DNA replication; component of the Mcm2-7 hexameric complex that binds chromatin as a part of the pre-replicative complex 1.64932198272099 330.653045654297 499.24235534668 MCM2 6267 // pre-replicative complex formation and maintenance // inferred from physical interaction /// 6268 // DNA unwinding // traceable author statement /// 6270 // DNA replication initiation // traceable author statement 5634 // nucleus // inferred from direct assay /// 5656 // pre-replicative complex // inferred from direct assay /// 5737 // cytoplasm // traceable author statement /// 5737 // cytoplasm // inferred from direct assay /// 42555 // MCM complex // inferred from direct assay 3682 // chromatin binding // traceable author statement /// 4003 // ATP-dependent DNA helicase activity // traceable author statement 439.911590576172 266.722686767578 394.583404541016 558.573120117188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL023C /GEN=MCM2 /DB_XREF=GI:6319448 /SEG=NC_001134:-174885,177491 /DEF=Member of complex that acts at ARS's to initiate replication /NOTE=Mcm2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10704410]; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 9442876]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10704410]; go_component: pre-replicative complex [goid GO:0005656] [evidence IDA] [pmid 9335335]; go_function: ATP-dependent DNA helicase activity [goid GO:0004003] [evidence TAS] [pmid 9914182]; go_function: chromatin binding [goid GO:0003682] [evidence TAS] [pmid 9442876]; go_process: DNA replication initiation [goid GO:0006270] [evidence TAS] [pmid 9442876]; go_process: DNA unwinding [goid GO:0006268] [evidence TAS] [pmid 9914182]; go_process: pre-replicative complex formation and maintenance [goid GO:0006267] [evidence IPI] [pmid 9335335] --- --- --- --- --- --- S0000119 // MCM2 SGDID:S0000119, Chr II from 177529-174923, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021119 // cdna:Genscan chromosome:SGD1:II:174923:177529:-1 // ensembl // 11 // --- /// GENEFINDER00000022270 // cdna:GeneFinder chromosome:SGD1:II:174923:177529:-1 // ensembl // 11 // --- /// YBL023C // cdna:known chromosome:SGD1:II:174923:177529:-1 gene:YBL023C // ensembl // 11 // --- --- No cerevisiae_gene -1.15415609626039 -1.64932198272099 1.51666313678445 -1.11487605792211 1.26973949330501 Max fold change below threshold 4 1.64932198272099 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770249_at YLL049W.S1 Hypothetical protein 1.64928938998412 595.691375732422 703.821807861328 --- --- --- --- 694.786560058594 593.507202148438 597.875549316406 712.857055664063 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL049W /GEN=COF1 /DB_XREF=GI:6322979 /SEG=NC_001144:+40665,41204 /DEF=Hypothetical ORF /NOTE=Yll049wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003972 // YLL049W SGDID:S0003972, Chr XII from 40665-41204, Uncharacterized ORF // sgd // 11 // --- /// YLL049W // cdna:known chromosome:SGD1:XII:40665:41204:1 gene:YLL049W // ensembl // 11 // --- --- No cerevisiae_gene -1.64928938998412 -1.17064554152592 1.10734453896526 -1.16209227966086 1.02600870057697 Max fold change below threshold 4 1.64928938998412 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769368_at YOR290C.S1 Catalytic subunit of the 11-subunit SWI/SNF chromatin remodeling complex involved in transcriptional regulation; contains DNA-stimulated ATPase activity; functions interdependently in transcriptional activation with Snf5p and Snf6p 1.64840546667463 1447.02709960938 2070.47827148438 SNF2 6338 // chromatin remodeling // traceable author statement 16514 // SWI/SNF complex // traceable author statement /// 16585 // chromatin remodeling complex // traceable author statement 16251 // general RNA polymerase II transcription factor activity // traceable author statement 2092.22314453125 1269.24060058594 1624.81359863281 2048.7333984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR290C /GEN=SNF2 /DB_XREF=GI:6324864 /SEG=NC_001147:-855144,860255 /DEF=involved in the coordinate regulation of phospholipid synthesis /NOTE=Snf2p; go_component: SWI/SNF complex [goid GO:0016514] [evidence TAS] [pmid 9726966]; go_component: nucleosome remodeling complex [goid GO:0005679] [evidence TAS] [pmid 9048886]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9048886]; go_process: chromatin remodeling [goid GO:0006338] [evidence TAS] [pmid 9048886] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 1.29999995231628 --- S0005816 // SNF2 SGDID:S0005816, Chr XV from 860255-855144, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017737 // cdna:Genscan chromosome:SGD1:XV:855144:859523:-1 // ensembl // 11 // --- /// GENEFINDER00000022646 // cdna:GeneFinder chromosome:SGD1:XV:855144:860255:-1 // ensembl // 11 // --- /// YOR290C // cdna:known chromosome:SGD1:XV:855144:860255:-1 gene:YOR290C // ensembl // 11 // --- --- No cerevisiae_gene -1.54561726063775 -1.64840546667463 -1.10196450604713 -1.28766964179259 -1.02122762587212 Max fold change below threshold 4 1.64840546667463 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770874_at SPBC725.05c.S1 --- 1.64816327384831 --- --- --- --- 6.56186294555664 5.98711919784546 10.8150215148926 5.45576095581055 0.334473013877869 0.129638999700546 0.018554700538516 0.010009765625 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC725.05c /DEF=nucleotide pyrophosphatase (predicted) --- --- --- --- --- --- SPBC725.05c // |||nucleotide pyrophosphatase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.20154699385886 -1.09599671039087 1.20503190704548 1.64816327384831 -1.20274018577886 Max fold change below threshold 4 1.64816327384831 Max fold change below threshold APAMPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1773610_at YJR060W.S1 Helix-loop-helix protein that binds the motif CACRTG, which is present at several sites including MET gene promoters and centromere DNA element I (CDEI); required for nucleosome positioning at this motif; targets Isw1p to DNA 1.64814940911963 205.557991027832 295.945838928223 CBF1 67 // DNA replication and chromosome cycle // inferred from mutant phenotype /// 6333 // chromatin assembly or disassembly // inferred from direct assay /// 9086 // methionine biosynthesis // inferred from mutant phenotype 776 // kinetochore // traceable author statement /// 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 3677 // DNA binding // inferred from direct assay /// 19237 // centromeric DNA binding // inferred from direct assay 241.79231262207 194.96142578125 216.154556274414 350.099365234375 0.00805663969367743 0.018554700538516 0.00415039015933871 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR060W /GEN=CBF1 /DB_XREF=GI:6322520 /SEG=NC_001142:+548673,549728 /DEF=centromere binding factor; binds in vivo to CDE I sites in centromeres (and some promoters), and induces DNA bending, required for mitotic segregation and normal growth rate /NOTE=Cbf1p; go_component: kinetochore [goid GO:0000776] [evidence TAS] [pmid 12756538]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 11222754]; go_function: centromeric DNA binding [goid GO:0019237] [evidence IDA] [pmid 11222754]; go_process: DNA replication and chromosome cycle [goid GO:0000067] [evidence IMP] [pmid 2185892]; go_process: methionine biosynthesis [goid GO:0009086] [evidence IMP] [pmid 2185892] --- --- --- --- --- --- S0003821 // CBF1 SGDID:S0003821, Chr X from 548673-549728, Verified ORF // sgd // 11 // --- /// GENSCAN00000024180 // cdna:Genscan chromosome:SGD1:X:548673:549728:1 // ensembl // 11 // --- /// GENEFINDER00000024354 // cdna:GeneFinder chromosome:SGD1:X:548673:549728:1 // ensembl // 11 // --- /// YJR060W // cdna:known chromosome:SGD1:X:548673:549728:1 gene:YJR060W // ensembl // 11 // --- --- No cerevisiae_gene 1.00507317225859 -1.24020591074957 1.64814940911963 -1.11860844753653 1.44793422684861 Max fold change below threshold 4 1.64814940911963 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1771260_at YPR005C.S1 Cytoplasmic protein involved in halotolerance; decreases intracellular Na+ (via Ena1p) and increases intracellular K+ by decreasing efflux; expression repressed by Ssn6p-Tup1p and Sko1p and induced by NaCl, KCl, and sorbitol through Gcn4p 1.64786725097297 1173.34918212891 835.82080078125 HAL1 9651 // response to salt stress // inferred from genetic interaction /// 9651 // response to salt stress // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 774.127319335938 1071.03930664063 1275.65905761719 897.514282226563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR005C /GEN=HAL1 /DB_XREF=GI:6325262 /SEG=NC_001148:-565782,566666 /DEF=Cytoplasmic protein involved in halotolerance; decreases intracellular Na+ (via Ena1p) and increases intracellular K+ by decreasing efflux; expression repressed by Ssn6p-Tup1p and Sko1p and induced by NaCl, KCl, and sorbitol through Gcn4p /NOTE=Hal1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 1505513]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IMP] [pmid 1505513]; go_process: response to salt stress [goid GO:0009651] [evidence IGI,IMP] [pmid 1505513] --- --- --- --- scop // a.140.2.SAP domain // All alpha proteins; LEM/SAP HeH motif; SAP domain; SAP domain // 9.89999961853027 --- S0006209 // HAL1 SGDID:S0006209, Chr XVI from 566668-565784, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017189 // cdna:Genscan chromosome:SGD1:XVI:565784:566668:-1 // ensembl // 11 // --- /// YPR005C // cdna:known chromosome:SGD1:XVI:565784:566668:-1 gene:YPR005C // ensembl // 11 // --- --- No cerevisiae_gene 1.24321489782393 1.3835441275466 1.0582819836664 1.64786725097297 1.15938846208976 Max fold change below threshold 4 1.64786725097297 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773154_at YOL010W.S1 RNA terminal phosphate cyclase-like protein involved in rRNA processing at sites A0, A1, and A2; does not possess detectable RNA cyclase activity 1.64765300532703 317.265762329102 463.837997436523 RCL1 6364 // rRNA processing // inferred from mutant phenotype 5730 // nucleolus // inferred from direct assay 3963 // RNA-3'-phosphate cyclase activity // inferred from sequence similarity /// 3963 // RNA-3'-phosphate cyclase activity // inferred from direct assay 436.76513671875 288.534881591797 345.996643066406 490.910858154297 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL010W /GEN=RCL1 /DB_XREF=GI:6324564 /SEG=NC_001147:+307938,309041 /DEF=RNA terminal phosphate cyclase-like protein involved in rRNA processing at sites A0, A1, and A2; does not possess detectable RNA cyclase activity /NOTE=Rcl1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 10790377]; go_function: RNA-3'-phosphate cyclase activity [goid GO:0003963] [evidence IDA,ISS] [pmid 10790377]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 10790377] --- --- --- --- --- --- S0005370 // RCL1 SGDID:S0005370, Chr XV from 307938-309041, Verified ORF // sgd // 11 // --- /// GENSCAN00000017460 // cdna:Genscan chromosome:SGD1:XV:307938:309041:1 // ensembl // 11 // --- /// GENEFINDER00000022574 // cdna:GeneFinder chromosome:SGD1:XV:307938:309041:1 // ensembl // 11 // --- /// YOL010W // cdna:known chromosome:SGD1:XV:307938:309041:1 gene:YOL010W // ensembl // 11 // --- --- No cerevisiae_gene 1.64765300532703 -1.51373426432601 -1.07112289811912 -1.26233923210325 1.12396987965277 Max fold change below threshold 4 1.64765300532703 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770868_at YLR275W.S1 U1 snRNP protein of the Sm class 1.64764447279219 194.042663574219 328.019088745117 SMD2 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 31202 // RNA splicing factor activity, transesterification mechanism // inferred from physical interaction 302.721862792969 183.730087280273 204.355239868164 353.316314697266 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR275W /GEN=SMD2 /DB_XREF=GI:6323305 /SEG=NC_001144:+694380,694802 /DEF=U1 snRNP protein of the Sm class /NOTE=Smd2p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence IDA] [pmid 10377396]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10377396] --- --- --- --- --- --- S0004265 // SMD2 SGDID:S0004265, Chr XII from 694380-694384,694475-694802, intron sequence removed, Verified ORF // sgd // 11 // --- /// YLR275W // cdna:known chromosome:SGD1:XII:694380:694802:1 gene:YLR275W // ensembl // 11 // --- --- No cerevisiae_gene -1.62438093503853 -1.64764447279219 1.4079741198981 -1.48135111675269 1.16713180685895 Max fold change below threshold 4 1.64764447279219 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771828_at YBL001C.S1 Non-essential protein of unknown function, likely exists as tetramer, may be regulated by the binding of small-molecule ligands (possibly sulfate ions), may have a role in yeast cell-wall biogenesis 1.64747303459102 2660.5771484375 2186.64318847656 ECM15 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 2283.541015625 2742.98315429688 2578.17114257813 2089.74536132813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL001C /GEN=ECM15 /DB_XREF=GI:6319472 /SEG=NC_001134:-237117,237431 /DEF=Non-essential protein of unknown function, likely exists as tetramer, may be regulated by the binding of small-molecule ligands (possibly sulfate ions), may have a role in yeast cell-wall biogenesis /NOTE=Ecm15p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584] --- --- --- --- --- --- S0000097 // ECM15 SGDID:S0000097, Chr II from 237469-237155, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022138 // cdna:GeneFinder chromosome:SGD1:II:237155:237469:-1 // ensembl // 11 // --- /// YBL001C // cdna:known chromosome:SGD1:II:237155:237469:-1 gene:YBL001C // ensembl // 11 // --- --- No cerevisiae_gene -1.64747303459102 1.20119723513971 1.0318590576416 1.12902335668032 -1.09273649215027 Max fold change below threshold 4 1.64747303459102 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773946_at YNR029C.S1 Hypothetical protein 1.64739730787707 163.804878234863 242.333213806152 --- --- 5737 // cytoplasm // inferred from direct assay --- 233.648452758789 141.828842163086 185.780914306641 251.017974853516 0.000244141003349796 0.000732421875 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR029C /GEN=CPR8 /DB_XREF=GI:6324356 /SEG=NC_001146:-677198,678487 /DEF=Hypothetical ORF /NOTE=Ynr029cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005312 // YNR029C SGDID:S0005312, Chr XIV from 678488-677199, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020059 // cdna:Genscan chromosome:SGD1:XIV:677199:678488:-1 // ensembl // 11 // --- /// GENEFINDER00000020498 // cdna:GeneFinder chromosome:SGD1:XIV:677199:678488:-1 // ensembl // 11 // --- /// YNR029C // cdna:known chromosome:SGD1:XIV:677199:678488:-1 gene:YNR029C // ensembl // 11 // --- --- No cerevisiae_gene 1.06771694938444 -1.64739730787707 1.09197704995009 -1.25765584495478 1.07434041137289 Max fold change below threshold 4 1.64739730787707 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776326_at YBR125C.S1 Cytoplasmic type 2C protein phosphatase; identified as a high-copy number suppressor of the synthetic lethality of a cnb1 mpk1 double deletion; overexpression decreases high-osmolarity induced Hog1p phosphorylation and kinase activity 1.64724100244056 697.410339355469 1002.79119873047 PTC4 --- 5737 // cytoplasm // inferred from direct assay 15071 // protein phosphatase type 2C activity // inferred from direct assay /// 15071 // protein phosphatase type 2C activity // inferred from sequence similarity 939.417602539063 570.297607421875 824.523071289063 1066.16479492188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR125C /GEN=PTC4 /DB_XREF=GI:6319601 /SEG=NC_001134:-487155,488336 /DEF=Phosphatase type Two C /NOTE=Ptc4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein phosphatase type 2C activity [goid GO:0015071] [evidence IDA,ISS] [pmid 10580002]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000329 // PTC4 SGDID:S0000329, Chr II from 488374-487193, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021240 // cdna:Genscan chromosome:SGD1:II:487193:488374:-1 // ensembl // 11 // --- /// GENEFINDER00000022132 // cdna:GeneFinder chromosome:SGD1:II:487193:488374:-1 // ensembl // 11 // --- /// YBR125C // cdna:known chromosome:SGD1:II:487193:488374:-1 gene:YBR125C // ensembl // 11 // --- --- No cerevisiae_gene -1.07532611727199 -1.64724100244056 1.35674568775924 -1.13934665414562 1.1349210319673 Max fold change below threshold 4 1.64724100244056 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771443_at YML099C.S1 Zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type, involved in the regulation of arginine-responsive genes; acts with Arg80p and Arg82p 1.64621113313972 74.7145118713379 113.774433135986 ARG81 6525 // arginine metabolism // traceable author statement /// 45955 // negative regulation of calcium ion-dependent exocytosis // inferred from direct assay 5634 // nucleus // inferred from direct assay 3712 // transcription cofactor activity // inferred from direct assay 113.168273925781 68.7446899414063 80.6843338012695 114.380592346191 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML099C /GEN=ARG81 /DB_XREF=GI:6323539 /SEG=NC_001145:-74398,77040 /DEF=Regulator of arginine-responsive genes with ARG80 and ARG82 /NOTE=Arg81p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 3311884]; go_function: transcription cofactor activity [goid GO:0003712] [evidence IDA] [pmid 10688655]; go_process: arginine metabolism [goid GO:0006525] [evidence TAS] [pmid 3298999]; go_process: negative regulation of calcium ion-dependent exocytosis [goid GO:0045955] [evidence IDA] [pmid 10688655] --- --- --- --- --- --- S0004565 // ARG81 SGDID:S0004565, Chr XIII from 77040-74398, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018635 // cdna:Genscan chromosome:SGD1:XIII:74398:77007:-1 // ensembl // 11 // --- /// GENEFINDER00000021820 // cdna:GeneFinder chromosome:SGD1:XIII:74398:77007:-1 // ensembl // 10 // --- /// YML099C // cdna:known chromosome:SGD1:XIII:74398:77040:-1 gene:YML099C // ensembl // 11 // --- YML099W-A // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene -1.54506880170127 -1.64621113313972 1.61386423097604 -1.40260529639523 1.01071252903623 Max fold change below threshold 4 1.64621113313972 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780209_at YNL029C.S1 Putative mannosyltransferase involved in protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family 1.64581283081184 375.005386352539 628.618103027344 KTR5 6487 // N-linked glycosylation // inferred from sequence similarity /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5794 // Golgi apparatus // inferred from sequence similarity 30 // mannosyltransferase activity // inferred from sequence similarity 577.275329589844 350.753936767578 399.2568359375 679.960876464844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL029C /GEN=KTR5 /DB_XREF=GI:6324300 /SEG=NC_001146:-577203,578771 /DEF=Putative mannosyltransferase of the KRE2 family /NOTE=Ktr5p; go_component: Golgi apparatus [goid GO:0005794] [evidence ISS] [pmid 9878809]; go_function: mannosyltransferase activity [goid GO:0000030] [evidence ISS] [pmid 9878809]; go_process: N-linked glycosylation [goid GO:0006487] [evidence ISS] [pmid 9878809]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9090056] --- --- --- --- --- S0004974 // span:12-34 // numtm:1 S0004974 // KTR5 SGDID:S0004974, Chr XIV from 578772-577204, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020014 // cdna:Genscan chromosome:SGD1:XIV:577204:578607:-1 // ensembl // 11 // --- /// GENEFINDER00000020581 // cdna:GeneFinder chromosome:SGD1:XIV:577204:578607:-1 // ensembl // 11 // --- /// YNL029C // cdna:known chromosome:SGD1:XIV:577204:578772:-1 gene:YNL029C // ensembl // 11 // --- --- No cerevisiae_gene 1.14962668423472 -1.64581283081184 -1.32089517063783 -1.44587462913274 1.17787967302874 Max fold change below threshold 4 1.64581283081184 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779113_at YNL080C.S1 Deletion causes slight growth defect, similar to U. maydis myp1 protein 1.64537512263388 930.44189453125 923.882873535156 --- --- 16020 // membrane // inferred from sequence similarity --- 872.9697265625 953.7314453125 907.15234375 974.796020507813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL080C /GEN=PMS1 /DB_XREF=GI:6324249 /SEG=NC_001146:-476931,478031 /DEF=Deletion causes slight growth defect, similar to U. maydis myp1 protein /NOTE=Ynl080cp; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 10649453]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005024 // span:132-154,161-183,198-220,319-341 // numtm:4 S0005024 // YNL080C SGDID:S0005024, Chr XIV from 478031-476931, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020700 // cdna:GeneFinder chromosome:SGD1:XIV:476784:478031:-1 // ensembl // 11 // --- /// YNL080C // cdna:known chromosome:SGD1:XIV:476931:478031:-1 gene:YNL080C // ensembl // 11 // --- --- No cerevisiae_gene 1.64537512263388 1.09251376799516 -1.10650460016717 1.03915670400405 1.11664355686912 Max fold change below threshold 4 1.64537512263388 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771518_at YOL144W.S1 Nucleolar protein required for 60S ribosomal subunit biogenesis 1.64531584966299 271.845031738281 404.724197387695 NOP8 27 // ribosomal large subunit assembly and maintenance // traceable author statement /// 6364 // rRNA processing // traceable author statement 5730 // nucleolus // traceable author statement --- 395.990539550781 240.677520751953 303.012542724609 413.457855224609 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL144W /GEN=NOP8 /DB_XREF=GI:6324428 /SEG=NC_001147:+53096,54550 /DEF=Nucleolar protein required for 60S ribosomal subunit biogenesis /NOTE=Nop8p; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 10690410]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: rRNA processing [goid GO:0006364] [evidence TAS] [pmid 10690410]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0005504 // NOP8 SGDID:S0005504, Chr XV from 53096-54550, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022894 // cdna:GeneFinder chromosome:SGD1:XV:53501:54550:1 // ensembl // 11 // --- /// YOL144W // cdna:known chromosome:SGD1:XV:53096:54550:1 gene:YOL144W // ensembl // 11 // --- --- No cerevisiae_gene 1.2788221135654 -1.64531584966299 -1.12303906804452 -1.30684537342956 1.04411043681408 Max fold change below threshold 4 1.64531584966299 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sc-URA3-3_at AFFX-r2-Sc-URA3-3 Orotidine-5'-phosphate (OMP) decarboxylase, catalyzes the sixth enzymatic step in the de novo biosynthesis of pyrimidines, converting OMP into uridine monophosphate (UMP); converts 5-FOA into 5-fluorouracil, a toxic compound 1.64452891376264 433.10791015625 518.465545654297 URA3 6207 // 'de novo' pyrimidine base biosynthesis // traceable author statement /// 19856 // pyrimidine base biosynthesis // traceable author statement --- 4590 // orotidine-5'-phosphate decarboxylase activity // inferred from direct assay 484.267944335938 460.793304443359 405.422515869141 552.663146972656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=URA3 SGD:YEL021W orotidine-5-phosphate decarboxylase (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 7.40000009536743 --- S0000747 // URA3 SGDID:S0000747, Chr V from 116167-116970, Verified ORF // sgd // 11 // --- /// GENSCAN00000016786 // cdna:Genscan chromosome:SGD1:V:116167:116970:1 // ensembl // 11 // --- /// GENEFINDER00000019662 // cdna:GeneFinder chromosome:SGD1:V:116167:116970:1 // ensembl // 11 // --- /// YEL021W // cdna:known chromosome:SGD1:V:116167:116970:1 gene:YEL021W // ensembl // 11 // --- --- AFFX_control cerevisiae_gene -1.21514767706315 -1.05094396916408 -1.64452891376264 -1.19447718215099 1.14123421431602 Max fold change below threshold 4 1.64452891376264 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771177_at YLR224W.S1 Hypothetical protein 1.64445942972186 1044.69580078125 1643.18646240234 --- 6511 // ubiquitin-dependent protein catabolism // inferred from sequence similarity 151 // ubiquitin ligase complex // inferred from sequence similarity 5515 // protein binding // inferred from sequence similarity 1686.67919921875 1063.71765136719 1025.67395019531 1599.69372558594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR224W /GEN=IFH1 /DB_XREF=GI:6323253 /SEG=NC_001144:+586466,587575 /DEF=Hypothetical ORF /NOTE=Ylr224wp; go_component: ubiquitin ligase complex [goid GO:0000151] [evidence ISS] [pmid 9635407]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 9635407]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence ISS] [pmid 9635407] --- --- --- --- --- --- S0004214 // YLR224W SGDID:S0004214, Chr XII from 586466-587575, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017994 // cdna:Genscan chromosome:SGD1:XII:586466:587602:1 // ensembl // 11 // --- /// GENEFINDER00000024837 // cdna:GeneFinder chromosome:SGD1:XII:586466:587602:1 // ensembl // 11 // --- /// YLR224W // cdna:known chromosome:SGD1:XII:586466:587575:1 gene:YLR224W // ensembl // 11 // --- --- No cerevisiae_gene -1.23850135813836 -1.58564558654345 -1.12478278336052 -1.64445942972186 -1.0543763298196 Max fold change below threshold 4 1.64445942972186 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772275_at YJR097W.S1 Protein of unknown function, contains a J-domain, which is a region with homology to the E. coli DnaJ protein 1.64411593711886 103.558036804199 127.40336227417 JJJ3 17183 // peptidyl-diphthamide biosynthesis from peptidyl-histidine // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 121.872505187988 96.7527847290039 110.363288879395 132.934219360352 0.00122069998178631 0.014160200022161 0.00805663969367743 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR097W /GEN=JJJ3 /DB_XREF=GI:6322557 /SEG=NC_001142:+612330,612848 /DEF=Protein that may function as a cochaperone, as suggested by the presence of a DnaJ-like domain /NOTE=Jjj3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 6.99999977785866E-21 --- S0003858 // JJJ3 SGDID:S0003858, Chr X from 612330-612848, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024209 // cdna:Genscan chromosome:SGD1:X:612330:612848:1 // ensembl // 11 // --- /// YJR097W // cdna:known chromosome:SGD1:X:612330:612848:1 gene:YJR097W // ensembl // 11 // --- --- No cerevisiae_gene 1.64411593711886 -1.25962788078237 -1.40084395771074 -1.10428482537496 1.09076464092783 Max fold change below threshold 4 1.64411593711886 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1773354_at YOL027C.S1 Mitochondrial inner membrane protein, required for mitochondrial potassium homeostasis and for normal mitochondrial morphology and inheritance; human ortholog is implicated in Wolf-Hirschhorn syndrome 1.64395149114796 1527.76776123047 1118.59503173828 MDM38 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype /// 30007 // potassium ion homeostasis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5743 // mitochondrial inner membrane // inferred from direct assay --- 1054.333984375 1322.26159667969 1733.27392578125 1182.85607910156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL027C /GEN=MDM38 /DB_XREF=GI:6324546 /SEG=NC_001147:-272003,273724 /DEF=Mitochondrial Distribution and Morphology /NOTE=Mdm38p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence IMP] [pmid 11907266] --- --- --- --- --- S0005387 // span:136-158 // numtm:1 S0005387 // MDM38 SGDID:S0005387, Chr XV from 273724-272003, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017446 // cdna:Genscan chromosome:SGD1:XV:272003:273724:-1 // ensembl // 11 // --- /// GENEFINDER00000022721 // cdna:GeneFinder chromosome:SGD1:XV:272003:273328:-1 // ensembl // 11 // --- /// YOL027C // cdna:known chromosome:SGD1:XV:272003:273724:-1 gene:YOL027C // ensembl // 11 // --- --- No cerevisiae_gene 1.05573256962056 1.25412024678642 -1.04903942145996 1.64395149114796 1.12189884479798 Max fold change below threshold 4 1.64395149114796 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780110_at SPCC1682.13.S1 --- 1.64357401789282 --- --- --- --- 26.5841846466064 17.4203300476074 23.6725559234619 16.1746196746826 0.0805663987994194 0.171387001872063 0.111571997404099 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1682.13 /DEF=SWIRM domain --- --- --- --- --- --- SPCC1682.13 // |||SWIRM domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.62454175693991 -1.52604368424453 -1.1897936751917 -1.1229959592263 -1.64357401789282 Max fold change below threshold 4 1.64357401789282 Max fold change below threshold APAPAA No 4 0 AAAA 4 0 0 No No x = 1
1770451_at YER183C.S1 5,10-methenyltetrahydrofolate synthetase, involved in folic acid biosynthesis 1.64337990644377 544.843933105469 861.623291015625 FAU1 9396 // folic acid and derivative biosynthesis // inferred from direct assay 5739 // mitochondrion // inferred from direct assay 30272 // 5-formyltetrahydrofolate cyclo-ligase activity // inferred from direct assay 815.458068847656 496.207885742188 593.47998046875 907.788513183594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER183C /GEN=FAU1 /DB_XREF=GI:6321031 /SEG=NC_001137:-553329,553964 /DEF=5,10-methenyltetrahydrofolate synthetase, involved in folic acid biosynthesis /NOTE=Fau1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: 5-formyltetrahydrofolate cyclo-ligase activity [goid GO:0030272] [evidence IDA] [pmid 11923304]; go_process: folic acid and derivative biosynthesis [goid GO:0009396] [evidence IDA] [pmid 11923304] --- --- --- --- --- --- S0000985 // FAU1 SGDID:S0000985, Chr V from 553964-553329, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000019709 // cdna:GeneFinder chromosome:SGD1:V:553329:553964:-1 // ensembl // 10 // --- /// YER183C // cdna:known chromosome:SGD1:V:553329:553964:-1 gene:YER183C // ensembl // 10 // --- --- No cerevisiae_gene 1.11341865720991 -1.64337990644377 -1.12482580961066 -1.37402792964235 1.11322525076784 Max fold change below threshold 4 1.64337990644377 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774813_at YHR091C.S1 Mitochondrial arginyl-tRNA synthetase 1.64319401325095 419.407562255859 607.286346435547 MSR1 6412 // protein biosynthesis // inferred from mutant phenotype /// 6412 // protein biosynthesis // inferred from sequence similarity /// 6420 // arginyl-tRNA aminoacylation // inferred from mutant phenotype 5739 // mitochondrion // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from direct assay 4814 // arginine-tRNA ligase activity // inferred from mutant phenotype 576.76611328125 426.399047851563 412.416076660156 637.806579589844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR091C /GEN=MSR1 /DB_XREF=GI:6321883 /SEG=NC_001140:-284840,286771 /DEF=Nuclear-encoded mitochondrial protein /NOTE=Msr1p; go_component: mitochondrion [goid GO:0005739] [evidence IMP] [pmid 7607232]; go_function: arginine-tRNA ligase activity [goid GO:0004814] [evidence IMP] [pmid 7607232]; go_process: arginyl-tRNA aminoacylation [goid GO:0006420] [evidence IMP] [pmid 7607232]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP,ISS] [pmid 7607232] --- --- --- --- --- --- S0001133 // MSR1 SGDID:S0001133, Chr VIII from 286771-284840, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000016632 // cdna:Genscan chromosome:SGD1:VIII:284840:286693:-1 // ensembl // 10 // --- /// YHR091C // cdna:known chromosome:SGD1:VIII:284840:286771:-1 gene:YHR091C // ensembl // 10 // --- --- No cerevisiae_gene -1.64319401325095 -1.35264399905985 -1.07775359765912 -1.39850540733533 1.10583226875333 Max fold change below threshold 4 1.64319401325095 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771389_at YOR353C.S1 Protein required for cell morphogenesis and cell separation after mitosis 1.64316709520462 632.849243164063 1032.35797119141 SOG2 903 // cellular morphogenesis during vegetative growth // inferred from genetic interaction 131 // incipient bud site // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5933 // bud // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay --- 974.035034179688 592.779052734375 672.91943359375 1090.68090820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR353C /GEN=SOG2 /DB_XREF=GI:6324929 /SEG=NC_001147:-998448,1000823 /DEF=Protein required for cell viability /NOTE=Sog2p; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 12972564]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 12972564]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 12972564]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005880 // SOG2 SGDID:S0005880, Chr XV from 1000823-998448, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017805 // cdna:Genscan chromosome:SGD1:XV:998448:1000823:-1 // ensembl // 11 // --- /// GENEFINDER00000022765 // cdna:GeneFinder chromosome:SGD1:XV:998448:1000112:-1 // ensembl // 11 // --- /// YOR353C // cdna:known chromosome:SGD1:XV:998448:1000823:-1 gene:YOR353C // ensembl // 11 // --- --- No cerevisiae_gene -1.01840248690845 -1.64316709520462 -1.23010015796159 -1.4474764519399 1.11975531672911 Max fold change below threshold 4 1.64316709520462 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776315_at YDR411C.S1 Protein of unknown function, localizes to the ER, contains four transmembrane domains; member of the Der1p-like family 1.64303685999622 677.603332519531 957.93994140625 DFM1 30433 // ER-associated protein catabolism // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay --- 912.178283691406 555.17822265625 800.028442382813 1003.70159912109 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR411C /GEN=DFM1 /DB_XREF=GI:6320619 /SEG=NC_001136:-1293357,1294382 /DEF=Hypothetical ORF /NOTE=Dfm1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002819 // span:36-58,123-145,171-193,200-222 // numtm:4 S0002819 // DFM1 SGDID:S0002819, Chr IV from 1294384-1293359, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025426 // cdna:Genscan chromosome:SGD1:IV:1293359:1294384:-1 // ensembl // 11 // --- /// YDR411C // cdna:known chromosome:SGD1:IV:1293359:1294384:-1 gene:YDR411C // ensembl // 11 // --- --- No cerevisiae_gene -1.13695101506521 -1.64303685999622 -1.32965673888596 -1.14018231773681 1.10033489841406 Max fold change below threshold 4 1.64303685999622 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778131_at YMR157C.S1 The authentic, non-tagged protein was localized to the mitochondria 1.64235159852639 560.346160888672 828.356597900391 --- --- 5739 // mitochondrion // inferred from direct assay --- 810.711120605469 493.628234863281 627.064086914063 846.002075195313 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR157C /GEN=TPP1 /DB_XREF=GI:6323807 /SEG=NC_001145:-571276,572043 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ymr157cp --- --- --- --- --- --- S0004766 // FMP39 SGDID:S0004766, Chr XIII from 572043-571276, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018844 // cdna:Genscan chromosome:SGD1:XIII:571276:572043:-1 // ensembl // 11 // --- /// GENEFINDER00000021815 // cdna:GeneFinder chromosome:SGD1:XIII:571276:572043:-1 // ensembl // 11 // --- /// YMR157C // cdna:known chromosome:SGD1:XIII:571276:572043:-1 gene:YMR157C // ensembl // 11 // --- --- No cerevisiae_gene 1.01399814239449 -1.64235159852639 1.45453372362573 -1.29286804574502 1.04353086283495 Max fold change below threshold 4 1.64235159852639 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770039_at YLL051C.S1 Putative ferric reductase with similarity to Fre2p; expression induced by low iron levels 1.64095177104394 320.137878417969 512.634506225586 FRE6 --- 324 // vacuole (sensu Fungi) // inferred from direct assay 293 // ferric-chelate reductase activity // inferred from sequence similarity 463.908233642578 295.823852539063 344.451904296875 561.360778808594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL051C /GEN=FRE6 /DB_XREF=GI:6322977 /SEG=NC_001144:-37332,39470 /DEF=Putative ferric reductase with similarity to Fre2p; expression induced by low iron levels /NOTE=Fre6p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: ferric-chelate reductase activity [goid GO:0000293] [evidence ISS] [pmid 11120744]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003974 // span:166-188,243-265,288-310,325-347,359-381,386-405,417-436 // numtm:7 S0003974 // FRE6 SGDID:S0003974, Chr XII from 39470-37332, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017666 // cdna:Genscan chromosome:SGD1:XII:37332:39212:-1 // ensembl // 11 // --- /// YLL051C // cdna:known chromosome:SGD1:XII:37332:39470:-1 gene:YLL051C // ensembl // 11 // --- --- No cerevisiae_gene -1.00912252345405 -1.56819076508146 1.64095177104394 -1.34680118720652 1.21006858274712 Max fold change below threshold 4 1.64095177104394 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779092_at SPAC926.03.S1 --- 1.64088532112119 --- --- --- --- 10.5714101791382 17.346471786499 11.0609645843506 6.48570013046265 0.303710997104645 0.129638999700546 0.219482004642487 0.466064006090164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC926.03 /GEN=rlc1 /DEF=myosin regulatory light chain (type II) (PMID 11056543) --- --- --- --- --- --- SPAC926.03 // |rlc1||myosin II regulatory light chain |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.34590298847069 1.64088532112119 1.21175421362721 1.04630928106247 -1.62995666874658 Max fold change below threshold 4 1.64088532112119 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777536_at YGR067C.S1 Hypothetical protein; has similarity to Adr1p DNA-binding domain 1.64068198810397 1165.32342529297 1196.43518066406 --- --- --- --- 1153.01538085938 1095.43225097656 1235.21459960938 1239.85498046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR067C /GEN=VHT1 /DB_XREF=GI:6321504 /SEG=NC_001139:-622404,624788 /DEF=Hypothetical ORF; has similarity to Adr1p DNA-binding domain /NOTE=Ygr067cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003299 // YGR067C SGDID:S0003299, Chr VII from 624790-622406, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019391 // cdna:Genscan chromosome:SGD1:VII:622406:624583:-1 // ensembl // 11 // --- /// GENEFINDER00000021609 // cdna:GeneFinder chromosome:SGD1:VII:622406:624253:-1 // ensembl // 11 // --- /// YGR067C // cdna:known chromosome:SGD1:VII:622406:624790:-1 gene:YGR067C // ensembl // 11 // --- --- No cerevisiae_gene 1.64068198810397 -1.05256658258097 -1.23557484173677 1.07129065241847 1.07531521352703 Max fold change below threshold 4 1.64068198810397 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771724_at YAL053W.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.64049946155815 3303.23474121094 3600.22399902344 --- --- 5737 // cytoplasm // inferred from direct assay --- 3785.0107421875 3660.16162109375 2946.30786132813 3415.43725585938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL053W /GEN=ACS1 /DB_XREF=GI:6319265 /SEG=NC_001133:+45900,48251 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Yal053wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000049 // span:183-205,212-234,348-370,402-421,436-455,493-515,519-541,548-570,580-602 // numtm:9 S0000049 // YAL053W SGDID:S0000049, Chr I from 45900-48251, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018182 // cdna:GeneFinder chromosome:SGD1:I:45900:48251:1 // ensembl // 11 // --- /// GENSCAN00000020332 // cdna:Genscan chromosome:SGD1:I:45900:48251:1 // ensembl // 11 // --- /// YAL053W // cdna:known chromosome:SGD1:I:45900:48251:1 gene:YAL053W // ensembl // 11 // --- --- No cerevisiae_gene -1.3324463767264 -1.03411027545184 -1.64049946155815 -1.28466233684124 -1.10820678543987 Max fold change below threshold 4 1.64049946155815 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772323_at SPBC1A4.03c.S1 --- 1.64047398467625 --- --- --- --- 3.56148076057434 2.17100715637207 5.54577493667603 3.90808916091919 0.219482004642487 0.567627012729645 0.194580003619194 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1A4.03c /GEN=top2 /DEF=DNA topoisomerase II --- --- --- --- --- --- SPBC1A4.03c // |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.07250387319317 -1.64047398467625 -1.15180660110433 1.55715425956188 1.09732142994616 Max fold change below threshold 3 1.64047398467625 Max fold change below threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775142_at YCR031C.S1 Ribosomal protein 59 of the small subunit, required for ribosome assembly and 20S pre-rRNA processing; mutations confer cryptopleurine resistance; nearly identical to Rps14Ap and similar to E. coli S11 and rat S14 ribosomal proteins /// Ribosomal protein 59 of the small subunit, required for ribosome assembly and 20S pre-rRNA processing; mutations confer cryptopleurine resistance; nearly identical to Rps14Bp and similar to E. coli S11 and rat S14 ribosomal proteins 1.64037056658204 3812.85778808594 5225.9521484375 RPS14B /// RPS14A 28 // ribosomal small subunit assembly and maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement /// 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3723 // RNA binding // inferred from direct assay /// 3735 // structural constituent of ribosome // traceable author statement 5916.0693359375 4019.17114257813 3606.54443359375 4535.8349609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR031C /GEN=RPS14A /DB_XREF=GI:10383793 /SEG=NC_001135:-177495,178215 /DEF=Ribosomal protein 59 (rp59) of the small (40S) ribosomal subunit, required for ribosome assembly; mutations confer resistance to cryptopleurine; nearly identical to Rps14Bp and similar to E. coli S11 and rat S14 ribosomal proteins /NOTE=Rps14ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 9858605]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: ribosomal small subunit assembly and maintenance [goid GO:0000028] [evidence IMP] [pmid 2277060] --- --- --- --- --- --- S0000627 // RPS14A SGDID:S0000627, Chr III from 178215-178209,177901-177495, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YCR031C // cdna:known chromosome:SGD1:III:177495:178215:-1 gene:YCR031C // ensembl // 11 // --- GENSCAN00000022481 // ensembl // 6 // Cross Hyb Matching Probes /// GENEFINDER00000023367 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene -1.11172822253742 -1.47196253308651 -1.44613557911201 -1.64037056658204 -1.30429554577857 Max fold change below threshold 4 1.64037056658204 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778673_at YHR019C.S1 Cytosolic asparaginyl-tRNA synthetase, required for protein synthesis, catalyzes the specific attachment of asparagine to its cognate tRNA 1.64012858458163 3405.53063964844 3620.41223144531 DED81 6421 // asparaginyl-tRNA aminoacylation // inferred from direct assay /// 6421 // asparaginyl-tRNA aminoacylation // inferred from genetic interaction /// 6421 // asparaginyl-tRNA aminoacylation // inferred from sequence similarity 5737 // cytoplasm // traceable author statement 4816 // asparagine-tRNA ligase activity // inferred from direct assay /// 4816 // asparagine-tRNA ligase activity // inferred from sequence similarity /// 5524 // ATP binding // traceable author statement 3732.779296875 3322.92211914063 3488.13916015625 3508.04516601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR019C /GEN=DED81 /DB_XREF=GI:6321807 /SEG=NC_001140:-141886,143550 /DEF=Cytosolic asparaginyl-tRNA synthetase, required for protein synthesis, catalyzes the specific attachment of asparagine to its cognate tRNA /NOTE=Ded81p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 9605503]; go_function: ATP binding [goid GO:0005524] [evidence TAS] [pmid 9605503]; go_function: asparagine-tRNA ligase activity [goid GO:0004816] [evidence IDA,ISS] [pmid 9605503]; go_process: asparaginyl-tRNA aminoacylation [goid GO:0006421] [evidence IDA,IGI,ISS] [pmid 9605503] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 1.70000004768372 --- S0001061 // DED81 SGDID:S0001061, Chr VIII from 143550-141886, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016568 // cdna:Genscan chromosome:SGD1:VIII:141886:143550:-1 // ensembl // 11 // --- /// GENEFINDER00000020309 // cdna:GeneFinder chromosome:SGD1:VIII:141886:143550:-1 // ensembl // 11 // --- /// YHR019C // cdna:known chromosome:SGD1:VIII:141886:143550:-1 gene:YHR019C // ensembl // 11 // --- --- No cerevisiae_gene 1.05547382171147 -1.12334239655318 -1.64012858458163 -1.07013485571711 -1.06406249641153 Max fold change below threshold 4 1.64012858458163 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769954_at YGL195W.S1 Positive regulator of the Gcn2p kinase activity, forms a complex with Gcn20p; proposed to stimulate Gcn2p activation by an uncharged tRNA 1.63974190031688 295.039031982422 404.424621582031 GCN1 6448 // regulation of translational elongation // inferred from mutant phenotype /// 6448 // regulation of translational elongation // inferred from physical interaction 5739 // mitochondrion // inferred from direct assay /// 5829 // cytosol // inferred from direct assay /// 5830 // cytosolic ribosome (sensu Eukaryota) // inferred from direct assay --- 356.969787597656 262.454986572266 327.623077392578 451.879455566406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL195W /GEN=GCN1 /DB_XREF=GI:6321243 /SEG=NC_001139:+131529,139547 /DEF=Positive regulator of the Gcn2p kinase activity, forms a complex with Gcn20p; proposed to stimulate Gcn2p activation by an uncharged tRNA /NOTE=Gcn1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 9234705]; go_component: cytosolic ribosome (sensu Eukarya) [goid GO:0005830] [evidence IDA] [pmid 9234705]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: regulation of translational elongation [goid GO:0006448] [evidence IMP,IPI] [pmid 9234705] --- --- --- --- scop // a.4.5.Biotin repressor-like // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Biotin repressor-like // 3.09999990463257 --- S0003163 // GCN1 SGDID:S0003163, Chr VII from 131531-139549, Verified ORF // sgd // 11 // --- /// GENSCAN00000019203 // cdna:Genscan chromosome:SGD1:VII:131531:139549:1 // ensembl // 11 // --- /// GENEFINDER00000021710 // cdna:GeneFinder chromosome:SGD1:VII:131531:139549:1 // ensembl // 11 // --- /// YGL195W // cdna:known chromosome:SGD1:VII:131531:139549:1 gene:YGL195W // ensembl // 11 // --- --- No cerevisiae_gene 1.63974190031688 -1.36011813781776 -1.36337338225097 -1.08957461250482 1.26587591237756 Max fold change below threshold 4 1.63974190031688 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774661_at YHR161C.S1 Protein involved in clathrin cage assembly; binds Pan1p and clathrin; homologous to Yap1802p, member of the AP180 protein family 1.63971973001994 1184.54669189453 1295.61938476563 YAP1801 6897 // endocytosis // inferred from physical interaction /// 6897 // endocytosis // inferred from sequence similarity 30479 // actin cortical patch // inferred from direct assay 30276 // clathrin binding // traceable author statement 1229.37646484375 1011.66345214844 1357.42993164063 1361.8623046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR161C /GEN=YAP1801 /DB_XREF=GI:6321955 /SEG=NC_001140:-420374,422287 /DEF=Yeast Assembly Polypeptide, member of AP180 protein family, binds Pan1p and clathrin /NOTE=Yap1801p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10652251]; go_function: clathrin binding [goid GO:0030276] [evidence TAS] [pmid 12461563]; go_process: endocytosis [goid GO:0006897] [evidence IPI,ISS] [pmid 9531549] --- --- --- --- scop // a.2.6.Effector domain of the protein kinase pkn/prk1 // All alpha proteins; Long alpha-hairpin; Effector domain of the protein kinase pkn/prk1; Effector domain of the protein kinase pkn/prk1 // 4.09999990463257 /// scop // a.2.6.Effector domain of the protein kinase pkn/prk1 // All alpha proteins; Long alpha-hairpin; Effector domain of the protein kinase pkn/prk1; Effector domain of the protein kinase pkn/prk1 // 4.19999980926514 --- S0001204 // YAP1801 SGDID:S0001204, Chr VIII from 422288-420375, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016688 // cdna:Genscan chromosome:SGD1:VIII:420375:422288:-1 // ensembl // 11 // --- /// GENEFINDER00000020218 // cdna:GeneFinder chromosome:SGD1:VIII:420375:422288:-1 // ensembl // 11 // --- /// YHR161C // cdna:known chromosome:SGD1:VIII:420375:422288:-1 gene:YHR161C // ensembl // 11 // --- --- No cerevisiae_gene -1.63971973001994 -1.2152030027703 1.04167935981266 1.1041613130386 1.10776669607108 Max fold change below threshold 4 1.63971973001994 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775702_at YMR018W.S1 Hypothetical protein 1.63920774126168 23.4002909660339 17.7973518371582 --- --- --- --- 19.1612453460693 31.4092617034912 15.3913202285767 16.4334583282471 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR018W /GEN=SPO20 /DB_XREF=GI:6323660 /SEG=NC_001145:+310207,311751 /DEF=Hypothetical ORF /NOTE=Ymr018wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004620 // YMR018W SGDID:S0004620, Chr XIII from 310207-311751, Uncharacterized ORF // sgd // 10 // --- /// YMR018W // cdna:known chromosome:SGD1:XIII:310207:311751:1 gene:YMR018W // ensembl // 10 // --- --- No cerevisiae_gene -1.20919116682366 1.63920774126168 -1.4975754613749 -1.24493838484974 -1.16598983387042 Max fold change below threshold 4 1.63920774126168 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776102_at YMR183C.S1 Plasma membrane t-SNARE involved in fusion of secretory vesicles at the plasma membrane; syntaxin homolog that is functionally redundant with Sso1p 1.63919082321915 857.459655761719 1251.90130615234 SSO2 6893 // Golgi to plasma membrane transport // traceable author statement /// 6906 // vesicle fusion // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 5887 // integral to plasma membrane // traceable author statement 5486 // t-SNARE activity // traceable author statement 1261.79174804688 769.765014648438 945.154296875 1242.01086425781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR183C /GEN=SSO2 /DB_XREF=GI:6323837 /SEG=NC_001145:-626920,627807 /DEF=SSO1 and SSO2 encode syntaxin homologs (post-Golgi t-SNAREs); act in late stages of secretion /NOTE=Sso2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11914276]; go_component: integral to plasma membrane [goid GO:0005887] [evidence TAS] [pmid 10047442]; go_function: t-SNARE activity [goid GO:0005486] [evidence TAS] [pmid 10047442]; go_process: Golgi to plasma membrane transport [goid GO:0006893] [evidence TAS] [pmid 10047442]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 10047442] --- --- --- --- --- CAA47960.1 // span:268-290 // numtm:1 /// S0004795 // span:268-290 // numtm:1 S0004795 // SSO2 SGDID:S0004795, Chr XIII from 627807-626920, reverse complement, Verified ORF // sgd // 11 // --- /// X67730 // S.cerevisiae SSO2 mRNA. // gb // 11 // --- /// GENSCAN00000018868 // cdna:Genscan chromosome:SGD1:XIII:626920:627807:-1 // ensembl // 11 // --- /// GENEFINDER00000022046 // cdna:GeneFinder chromosome:SGD1:XIII:626920:627807:-1 // ensembl // 11 // --- /// YMR183C // cdna:known chromosome:SGD1:XIII:626920:627807:-1 gene:YMR183C // ensembl // 11 // --- --- No cerevisiae_gene -1.10225112383442 -1.63919082321915 -1.27045603488242 -1.33501138620306 -1.01592649819604 Max fold change below threshold 4 1.63919082321915 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771536_at YER101C.S1 Protein that may have a role in targeting of plasma membrane [H+]ATPase (Pma1p) to the plasma membrane, as suggested by analysis of genetic interactions 1.6390771242618 637.689880371094 877.285461425781 AST2 --- 5737 // cytoplasm // inferred from direct assay --- 859.725463867188 524.518005371094 750.861755371094 894.845458984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER101C /GEN=AST2 /DB_XREF=GI:6320948 /SEG=NC_001137:-360498,361790 /DEF=Protein that may have a role in targeting of plasma membrane [H+]ATPase (Pma1p) to the plasma membrane, as suggested by analysis of genetic interactions /NOTE=Ast2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 8.89999961853027 --- S0000903 // AST2 SGDID:S0000903, Chr V from 361790-360498, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016886 // cdna:Genscan chromosome:SGD1:V:360498:361790:-1 // ensembl // 11 // --- /// GENEFINDER00000019583 // cdna:GeneFinder chromosome:SGD1:V:360498:361745:-1 // ensembl // 11 // --- /// YER101C // cdna:known chromosome:SGD1:V:360498:361790:-1 gene:YER101C // ensembl // 11 // --- --- No cerevisiae_gene -1.13755685364715 -1.6390771242618 1.24772056736521 -1.14498502249897 1.04085024416889 Max fold change below threshold 4 1.6390771242618 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777951_at SPCC4G3.17.S1 --- 1.63839238476786 --- --- --- --- 0.767224192619324 0.902573466300964 0.670707643032074 1.25701427459717 0.932372987270355 0.828612983226776 0.919434010982513 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4G3.17 /DEF=HD domain --- --- --- --- --- --- SPCC4G3.17 // |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.61628266010437 1.17641424108324 -1.19658954086698 -1.14390256409026 1.63839238476786 Max fold change below threshold 0 1.63839238476786 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776020_at YDR051C.S1 Hypothetical protein 1.63831767550274 737.327606201172 901.716735839844 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 822.092590332031 664.577880859375 810.077331542969 981.340881347656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR051C /GEN=TPI1 /DB_XREF=GI:6320256 /SEG=NC_001136:-557052,558056 /DEF=Hypothetical ORF /NOTE=Ydr051cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002458 // YDR051C SGDID:S0002458, Chr IV from 558057-557053, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025136 // cdna:Genscan chromosome:SGD1:IV:557053:558057:-1 // ensembl // 11 // --- /// YDR051C // cdna:known chromosome:SGD1:IV:557053:558057:-1 gene:YDR051C // ensembl // 11 // --- --- No cerevisiae_gene -1.63831767550274 -1.23701467353829 1.06072210118445 -1.01483223677692 1.19371089447638 Max fold change below threshold 4 1.63831767550274 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773321_at YFL041W.S1 Multicopper oxidase, integral membrane protein with similarity to Fet3p; may have a role in iron transport 1.63819008370601 578.071655273438 766.292297363281 FET5 6826 // iron ion transport // inferred from mutant phenotype 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay 4322 // ferroxidase activity // inferred from genetic interaction /// 4322 // ferroxidase activity // inferred from sequence similarity 743.519226074219 453.866271972656 702.277038574219 789.065368652344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL041W /GEN=FET5 /DB_XREF=GI:14318477 /SEG=NC_001138:+49139,51007 /DEF=Multicopper oxidase, integral membrane protein with similarity to Fet3p; may have a role in iron transport /NOTE=Fet5p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 10608875]; go_function: ferroxidase activity [goid GO:0004322] [evidence IGI,ISS] [pmid 9413439]; go_process: iron ion transport [goid GO:0006826] [evidence IMP] [pmid 9413439] --- --- --- --- --- --- S0001853 // FET5 SGDID:S0001853, Chr VI from 49139-51007, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018512 // cdna:GeneFinder chromosome:SGD1:VI:49139:51007:1 // ensembl // 11 // --- /// GENSCAN00000023206 // cdna:Genscan chromosome:SGD1:VI:49139:51007:1 // ensembl // 11 // --- /// YFL041W // cdna:known chromosome:SGD1:VI:49139:51007:1 gene:YFL041W // ensembl // 11 // --- --- No cerevisiae_gene -1.2068207686023 -1.63819008370601 1.14763099008449 -1.05872637895684 1.06125751827375 Max fold change below threshold 4 1.63819008370601 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779623_at YCR068W.S1 Lipase, required for intravacuolar lysis of autophagic bodies; located in the endoplasmic reticulum membrane and targeted to intravacuolar vesicles during autophagy via the multivesicular body (MVB) pathway 1.63787276661651 319.170715332031 428.936111450195 ATG15 6624 // vacuolar protein processing or maturation // inferred from mutant phenotype /// 6624 // vacuolar protein processing or maturation // inferred from direct assay /// 6914 // autophagy // inferred from mutant phenotype /// 6914 // autophagy // inferred from direct assay /// 30397 // membrane disassembly // inferred from mutant phenotype /// 30397 // membrane disassembly // inferred from direct assay 5775 // vacuolar lumen // inferred from direct assay /// 16021 // integral to membrane // inferred from physical interaction /// 16021 // integral to membrane // inferred from sequence similarity 16298 // lipase activity // inferred from mutant phenotype /// 16298 // lipase activity // inferred from sequence similarity 397.855529785156 242.909912109375 395.431518554688 460.016693115234 0.00585938012227416 0.0239257998764515 0.0107421996071935 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR068W /GEN=ATG15 /DB_XREF=GI:10383802 /SEG=NC_001135:+237209,238771 /DEF=Lipase, required for intravacuolar lysis of autophagic bodies; located in the endoplasmic reticulum membrane and targeted to intravacuolar vesicles during autophagy via the multivesicular body (MVB) pathway /NOTE=Atg15p; go_component: integral to membrane [goid GO:0016021] [evidence IPI,ISS] [pmid 11085977]; go_component: vacuolar lumen [goid GO:0005775] [evidence IDA] [pmid 11566994]; go_function: lipase activity [goid GO:0016298] [evidence IMP,ISS] [pmid 11085977]; go_process: autophagy [goid GO:0006914] [evidence IDA,IMP] [pmid 11566994]; go_process: membrane disassembly [goid GO:0030397] [evidence IDA,IMP] [pmid 11085977]; go_process: vacuolar protein processing/maturation [goid GO:0006624] [evidence IDA,IMP] [pmid 11085977] --- --- --- --- --- S0000664 // span:13-35 // numtm:1 S0000664 // ATG15 SGDID:S0000664, Chr III from 237209-238771, Verified ORF // sgd // 11 // --- /// GENSCAN00000022506 // cdna:Genscan chromosome:SGD1:III:237356:238771:1 // ensembl // 11 // --- /// GENEFINDER00000023335 // cdna:GeneFinder chromosome:SGD1:III:237356:238771:1 // ensembl // 11 // --- /// YCR068W // cdna:known chromosome:SGD1:III:237209:238771:1 gene:YCR068W // ensembl // 11 // --- --- No cerevisiae_gene 1.27579269045703 -1.63787276661651 1.44968639089111 -1.00613004051708 1.15624054129308 Max fold change below threshold 4 1.63787276661651 Max fold change below threshold PPPPPP No 3 0 PPPP 0 4 0 No No 3 < x
1770809_at YPR174C.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery; potential Cdc28p substrate 1.63738868001494 410.7783203125 566.728881835938 --- --- 5635 // nuclear membrane // inferred from direct assay /// 5816 // spindle pole body // inferred from direct assay --- 551.733276367188 336.959259033203 484.597381591797 581.724487304688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR174C /GEN=VPS4 /DB_XREF=GI:6325432 /SEG=NC_001148:-888037,888702 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery; potential Cdc28p substrate /NOTE=Ypr174cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006378 // YPR174C SGDID:S0006378, Chr XVI from 888704-888039, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017318 // cdna:Genscan chromosome:SGD1:XVI:888039:888704:-1 // ensembl // 11 // --- /// GENEFINDER00000021019 // cdna:GeneFinder chromosome:SGD1:XVI:888039:888704:-1 // ensembl // 11 // --- /// YPR174C // cdna:known chromosome:SGD1:XVI:888039:888704:-1 gene:YPR174C // ensembl // 11 // --- --- No cerevisiae_gene 1.41821229218379 -1.63738868001494 -1.38833173542657 -1.1385395326629 1.05435816946727 Max fold change below threshold 4 1.63738868001494 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772256_at SPBC26H8.07c.S1 --- 1.63716388623512 --- --- --- --- 4.66751337051392 3.56667828559875 3.12139821052551 4.10655212402344 0.696289002895355 0.725830018520355 0.533936023712158 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC26H8.07c /GEN=nda3 /DEF=tubulin (beta) (PMID 6094012) --- --- --- --- --- --- SPBC26H8.07c // |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.10029956610688 -1.30864434545724 -1.63716388623512 -1.4953277524075 -1.13660151619867 Max fold change below threshold 4 1.63716388623512 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771862_at YGL092W.S1 Essential nucleoporin, catalyzes its own cleavage in vivo to generate a C-terminal fragment that assembles into the Nup84p subcomplex of the nuclear pore complex, and an N-terminal fragment of unknown function that is homologous to Nup100p 1.63675832116442 881.593688964844 847.567047119141 NUP145 6388 // tRNA splicing // inferred from mutant phenotype /// 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6606 // protein-nucleus import // inferred from mutant phenotype /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6999 // nuclear pore organization and biogenesis // inferred from mutant phenotype 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement 809.653381347656 763.50537109375 999.682006835938 885.480712890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL092W /GEN=NUP145 /DB_XREF=GI:6321346 /SEG=NC_001139:+337907,341860 /DEF=Essential nucleoporin, catalyzes its own cleavage in vivo to generate a C-terminal fragment that assembles into the Nup84p subcomplex of the nuclear pore complex, and an N-terminal fragment of unknown function that is homologous to Nup100p /NOTE=Nup145p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence IMP] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus import [goid GO:0006606] [evidence IMP] [pmid 9442897]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA splicing [goid GO:0006388] [evidence IMP] [pmid 8524308]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0003060 // NUP145 SGDID:S0003060, Chr VII from 337909-341862, Verified ORF // sgd // 11 // --- /// GENSCAN00000019283 // cdna:Genscan chromosome:SGD1:VII:337909:341862:1 // ensembl // 11 // --- /// GENEFINDER00000021509 // cdna:GeneFinder chromosome:SGD1:VII:338581:341862:1 // ensembl // 11 // --- /// YGL092W // cdna:known chromosome:SGD1:VII:337909:341862:1 gene:YGL092W // ensembl // 11 // --- --- No cerevisiae_gene 1.63675832116442 -1.06044228632969 1.26710701653728 1.23470367674125 1.09365406640649 Max fold change below threshold 4 1.63675832116442 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769312_at YER059W.S1 Pho85p cyclin of the Pho80p subfamily; forms the major Glc8p kinase together with Pcl7p and Pho85p; involved in the control of glycogen storage by Pho85p; stabilized by Elongin C binding 1.63654305925445 449.953582763672 410.03337097168 PCL6 5979 // regulation of glycogen biosynthesis // inferred from genetic interaction /// 5981 // regulation of glycogen catabolism // inferred from genetic interaction 307 // cyclin-dependent protein kinase holoenzyme complex // traceable author statement 16538 // cyclin-dependent protein kinase regulator activity // traceable author statement 362.997497558594 425.849761962891 474.057403564453 457.069244384766 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER059W /GEN=PCL6 /DB_XREF=GI:6320901 /SEG=NC_001137:+272622,273884 /DEF=PHO85 cyclin /NOTE=Pcl6p; go_component: cyclin-dependent protein kinase holoenzyme complex [goid GO:0000307] [evidence TAS] [pmid 11602261]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS] [pmid 11602261]; go_process: regulation of glycogen biosynthesis [goid GO:0005979] [evidence IGI] [pmid 11602261]; go_process: regulation of glycogen catabolism [goid GO:0005981] [evidence IGI] [pmid 11602261] --- --- --- --- --- --- S0000861 // PCL6 SGDID:S0000861, Chr V from 272622-273884, Verified ORF // sgd // 11 // --- /// GENSCAN00000016852 // cdna:Genscan chromosome:SGD1:V:272622:273884:1 // ensembl // 11 // --- /// YER059W // cdna:known chromosome:SGD1:V:272622:273884:1 gene:YER059W // ensembl // 11 // --- --- No cerevisiae_gene 1.63654305925445 1.1731479275395 1.15069381309427 1.30595226345309 1.25915260424347 Max fold change below threshold 4 1.63654305925445 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777700_at YMR129W.S1 Nuclear pore membrane glycoprotein; may be involved in duplication of nuclear pores and nuclear pore complexes during S-phase; 1.63613054607443 890.854675292969 1333.08062744141 POM152 6406 // mRNA-nucleus export // traceable author statement /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6999 // nuclear pore organization and biogenesis // traceable author statement 5643 // nuclear pore // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 5198 // structural molecule activity // traceable author statement 1306.22595214844 798.362915039063 983.346435546875 1359.93530273438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR129W /GEN=POM152 /DB_XREF=GI:6323777 /SEG=NC_001145:+527803,531816 /DEF=May be involved in duplication of nuclear pores and nuclear pore complexes during S-phase /NOTE=Pom152p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence TAS] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- S0004736 // span:111-130,145-164,177-194 // numtm:3 S0004736 // POM152 SGDID:S0004736, Chr XIII from 527803-531816, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021804 // cdna:GeneFinder chromosome:SGD1:XIII:528589:531816:1 // ensembl // 11 // --- /// GENSCAN00000018822 // cdna:Genscan chromosome:SGD1:XIII:529027:531816:1 // ensembl // 11 // --- /// YMR129W // cdna:known chromosome:SGD1:XIII:527803:531816:1 gene:YMR129W // ensembl // 11 // --- --- No cerevisiae_gene -1.40870669910898 -1.63613054607443 1.04134477281327 -1.32834767578325 1.04111796316525 Max fold change below threshold 4 1.63613054607443 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776064_at YKL217W.S1 Lactate transporter, required for uptake of lactate and pyruvate; expression is derepressed by transcriptional activator Cat8p under nonfermentative growth conditions, and repressed in the presence of glucose, fructose, and mannose 1.63592383907309 5573.37817382813 4519.70666503906 JEN1 15727 // lactate transport // inferred from mutant phenotype /// 15727 // lactate transport // inferred from direct assay 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from mutant phenotype 15129 // lactate transporter activity // inferred from mutant phenotype /// 15129 // lactate transporter activity // inferred from direct assay 5081.59521484375 6795.99462890625 4350.76171875 3957.81811523438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL217W /GEN=JEN1 /DB_XREF=GI:6322632 /SEG=NC_001143:+22234,24084 /DEF=Repressed by glucose, induced by lactic acid; in high copy, weakly suppresses cpr3 null mutant phenotype on lactate medium at 37C /NOTE=Jen1p; go_component: plasma membrane [goid GO:0005886] [evidence IMP,ISS] [pmid 10198029]; go_function: lactate transporter activity [goid GO:0015129] [evidence IMP] [pmid 10198029]; go_function: lactate transporter activity [goid GO:0015129] [evidence IDA] [pmid 12962538]; go_process: lactate transport [goid GO:0015727] [evidence IMP] [pmid 10198029]; go_process: lactate transport [goid GO:0015727] [evidence IDA] [pmid 12962538] --- --- --- --- --- S0001700 // span:142-164,177-199,206-228,232-254,265-287,297-316,364-384,404-426,433-452,457-476,488-510,536-555 // numtm:12 S0001700 // JEN1 SGDID:S0001700, Chr XI from 22234-24084, Verified ORF // sgd // 11 // --- /// GENSCAN00000018255 // cdna:Genscan chromosome:SGD1:XI:22234:24084:1 // ensembl // 11 // --- /// GENEFINDER00000022940 // cdna:GeneFinder chromosome:SGD1:XI:22234:24084:1 // ensembl // 11 // --- /// YKL217W // cdna:known chromosome:SGD1:XI:22234:24084:1 gene:YKL217W // ensembl // 11 // --- --- No cerevisiae_gene -1.63592383907309 1.33737425780286 -1.12203053633953 -1.16797828595029 -1.2839385406024 Max fold change below threshold 4 1.63592383907309 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778610_s_at SPBC354.12.S1 --- 1.63581808837046 --- --- --- --- 59.8817596435547 70.5524749755859 97.9556655883789 59.9084243774414 0.0375977009534836 0.0461426004767418 0.018554700538516 0.0239257998764515 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC354.12 /GEN=gpd3 /DEF=glyceraldehyde 3-phosphate dehydrogenase --- --- --- --- --- --- X85332 // S.pombe mRNA for glyceraldehyde-3-phosphate dehydrogenase. // gb // 11 // --- /// SPBC354.12 // |gpd3||glyceraldehyde 3-phosphate dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- /// SPBC32F12.11 // |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.13954246892081 1.1781964223421 -1.26818177081065 1.63581808837046 1.00044528975176 Max fold change below threshold 4 1.63581808837046 Max fold change below threshold PPPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1775141_at YNL138W-A.S1 Component of the U2 snRNP, associated with the SF3b complex; conserved in Ashbya gossypii 1.63513941490011 623.599365234375 447.908264160156 --- --- --- --- 420.034820556641 686.815490722656 560.383239746094 475.781707763672 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL138W-A /GEN=RLR1 /DB_XREF=GI:33438865 /SEG=NC_001146:+366033,366412 /DEF=Identified based on homology to Ashbya gossypii, 10kDa U2 snRNP subunit, associated with SF3b /NOTE=Ynl138w-ap --- --- --- --- --- --- S0028509 // RCP10 SGDID:S0028509, Chr XIV from 366033-366035,366158-366412, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YNL138W-A // cdna:known chromosome:SGD1:XIV:366033:366412:1 gene:YNL138W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.43162659155422 1.63513941490011 1.28907043243674 1.33413520098991 1.13271968055685 Max fold change below threshold 4 1.63513941490011 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773094_at YBR081C.S1 Subunit of the SAGA transcriptional regulatory complex, involved in proper assembly of the complex; also present as a C-terminally truncated form in the SLIK/SALSA transcriptional regulatory complex 1.63502240161318 525.291427612305 906.521606445313 SPT7 747 // conjugation with cellular fusion // inferred from mutant phenotype /// 6461 // protein complex assembly // inferred from mutant phenotype /// 16568 // chromatin modification // traceable author statement /// 16573 // histone acetylation // traceable author statement 124 // SAGA complex // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 46695 // SLIK (SAGA-like) complex // inferred from physical interaction 5198 // structural molecule activity // inferred from direct assay /// 5198 // structural molecule activity // inferred from mutant phenotype 835.724426269531 511.139434814453 539.443420410156 977.318786621094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR081C /GEN=SPT7 /DB_XREF=GI:6319555 /SEG=NC_001134:-401210,405208 /DEF=Subunit of the SAGA transcriptional regulatory complex, involved in proper assembly of the complex; also present as a C-terminally truncated form in the SLIK/SALSA transcriptional regulatory complex /NOTE=Spt7p; go_component: SAGA complex [goid GO:0000124] [evidence IDA] [pmid 9674426]; go_function: structural molecule activity [goid GO:0005198] [evidence IDA] [pmid 12101232]; go_function: structural molecule activity [goid GO:0005198] [evidence IMP] [pmid 9858534]; go_process: chromatin modification [goid GO:0016568] [evidence TAS] [pmid 10839822]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IMP] [pmid 7713415]; go_process: histone acetylation [goid GO:0016573] [evidence TAS] [pmid 10839822]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP] [pmid 12101232] --- --- --- --- --- --- S0000285 // SPT7 SGDID:S0000285, Chr II from 405245-401247, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021204 // cdna:Genscan chromosome:SGD1:II:401247:405245:-1 // ensembl // 11 // --- /// GENEFINDER00000022165 // cdna:GeneFinder chromosome:SGD1:II:401247:405245:-1 // ensembl // 11 // --- /// YBR081C // cdna:known chromosome:SGD1:II:401247:405245:-1 gene:YBR081C // ensembl // 11 // --- --- No cerevisiae_gene -1.38799578305009 -1.63502240161318 -1.24593305606317 -1.54923462711641 1.16942709331066 Max fold change below threshold 4 1.63502240161318 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769760_at YGR075C.S1 Unique component of the U4/U6.U5 tri-snRNP particle, dispensable for spliceosome assembly, but required for conformational changes which lead to catalytic activation of the spliceosome 1.63494297760002 199.392997741699 299.098205566406 PRP38 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 46540 // U4/U6 x U5 tri-snRNP complex // inferred from mutant phenotype /// 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 31202 // RNA splicing factor activity, transesterification mechanism // inferred from physical interaction 270.640777587891 217.391723632813 181.394271850586 327.555633544922 0.000244141003349796 0.000244141003349796 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR075C /GEN=PRP38 /DB_XREF=GI:6321512 /SEG=NC_001139:-636149,636877 /DEF=Unique component of the U4/U6.U5 tri-snRNP particle, dispensable for spliceosome assembly, but required for conformational changes which lead to catalytic activation of the spliceosome /NOTE=Prp38p; go_component: U4/U6 x U5 tri-snRNP complex [goid GO:0046540] [evidence IMP] [pmid 9582287]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10377396] --- --- --- --- --- --- S0003307 // PRP38 SGDID:S0003307, Chr VII from 636879-636151, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019395 // cdna:Genscan chromosome:SGD1:VII:636151:636879:-1 // ensembl // 11 // --- /// YGR075C // cdna:known chromosome:SGD1:VII:636151:636879:-1 gene:YGR075C // ensembl // 11 // --- --- No cerevisiae_gene 1.63494297760002 -1.24494517576492 1.52303183103702 -1.49200288866242 1.21029667614869 Max fold change below threshold 4 1.63494297760002 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778613_at YLR390W.S1 Non-essential protein of unknown function 1.63489600824579 621.863739013672 423.677612304688 ECM19 7047 // cell wall organization and biogenesis // inferred from mutant phenotype --- --- 407.286437988281 577.856506347656 665.870971679688 440.068786621094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR390W /GEN=ECM19 /DB_XREF=GI:6323422 /SEG=NC_001144:+903066,903404 /DEF=Non-essential protein of unknown function /NOTE=Ecm19p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584] --- --- --- --- --- S0004382 // span:35-57 // numtm:1 S0004382 // ECM19 SGDID:S0004382, Chr XII from 903066-903404, Verified ORF // sgd // 11 // --- /// GENSCAN00000018113 // cdna:Genscan chromosome:SGD1:XII:903066:903404:1 // ensembl // 11 // --- /// GENEFINDER00000024656 // cdna:GeneFinder chromosome:SGD1:XII:903066:903404:1 // ensembl // 11 // --- /// YLR390W // cdna:known chromosome:SGD1:XII:903066:903404:1 gene:YLR390W // ensembl // 11 // --- --- No cerevisiae_gene -1.44762345456048 1.41879633704936 1.24483472978568 1.63489600824579 1.08048966421454 Max fold change below threshold 4 1.63489600824579 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777678_at YJL107C.S1 Pheromone-regulated protein, predicted to have 5 transmembrane segments /// Hypothetical protein 1.63478435143613 1290.70861816406 1991.32653808594 PRM10 747 // conjugation with cellular fusion // inferred from expression pattern 16021 // integral to membrane // inferred from sequence similarity --- 1933.70043945313 1182.84741210938 1398.56982421875 2048.95263671875 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL107C /GEN=PRM10 /DB_XREF=GI:6322354 /SEG=NC_001142:-218770,219933 /DEF=Hypothetical ORF /NOTE=Yjl107cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003644 // span:62-84,88-107,114-136,146-168,181-203,218-238,245-262,272-289,294-313,351-373 // numtm:10 S0003643 // YJL107C SGDID:S0003643, Chr X from 219933-218770, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024054 // cdna:Genscan chromosome:SGD1:X:218770:219933:-1 // ensembl // 11 // --- /// GENEFINDER00000024508 // cdna:GeneFinder chromosome:SGD1:X:218770:219933:-1 // ensembl // 11 // --- /// YJL107C // cdna:known chromosome:SGD1:X:218770:219933:-1 gene:YJL107C // ensembl // 11 // --- --- No cerevisiae_gene 1.38708091485356 -1.63478435143613 1.00092785284448 -1.3826270279593 1.05960188812814 Max fold change below threshold 4 1.63478435143613 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778500_at YPL089C.S1 MADS-box transcription factor, component of the protein kinase C-mediated MAP kinase pathway involved in the maintenance of cell integrity; phosphorylated and activated by the MAP-kinase Slt2p 1.63462688516944 1260.41259765625 889.232330322266 RLM1 7047 // cell wall organization and biogenesis // traceable author statement /// 7165 // signal transduction // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // traceable author statement 3677 // DNA binding // inferred from direct assay /// 8301 // DNA bending activity // inferred from direct assay /// 16563 // transcriptional activator activity // inferred from mutant phenotype /// 16563 // transcriptional activator activity // inferred from direct assay 852.205688476563 1127.78686523438 1393.03833007813 926.258972167969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL089C /GEN=RLM1 /DB_XREF=GI:6325168 /SEG=NC_001148:-379115,381145 /DEF=serum response factor-like protein that may function downstream of MPK1 (SLT2) MAP-kinase pathway /NOTE=Rlm1p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 9111331]; go_function: DNA bending activity [goid GO:0008301] [evidence IDA] [pmid 10064699]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 9121433]; go_function: transcriptional activator activity [goid GO:0016563] [evidence IDA,IMP] [pmid 12410835]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence TAS] [pmid 10594829]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IDA] [pmid 12410835]; go_process: signal transduction [goid GO:0007165] [evidence IMP] [pmid 7565726] --- --- --- --- --- --- S0006010 // RLM1 SGDID:S0006010, Chr XVI from 381147-379117, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020905 // cdna:GeneFinder chromosome:SGD1:XVI:379060:381147:-1 // ensembl // 11 // --- /// YPL089C // cdna:known chromosome:SGD1:XVI:379117:381147:-1 gene:YPL089C // ensembl // 11 // --- --- No cerevisiae_gene -1.01500177629371 1.32337401695881 -1.0012058178128 1.63462688516944 1.08689602133939 Max fold change below threshold 4 1.63462688516944 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775451_at YDL232W.S1 Subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes asparagine-linked glycosylation of newly synthesized proteins; type I membrane protein of 36 residues that binds Stt3p and Ost3p together in a subcomplex 1.63445862393394 580.602691650391 827.754455566406 OST4 6487 // N-linked glycosylation // traceable author statement /// 6487 // N-linked glycosylation // inferred from physical interaction 5789 // endoplasmic reticulum membrane // inferred from mutant phenotype /// 8250 // oligosaccharyl transferase complex // inferred from physical interaction 4579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from physical interaction /// 30674 // protein binding, bridging // inferred from direct assay 825.777099609375 655.975646972656 505.229736328125 829.731811523438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL232W /GEN=OST4 /DB_XREF=GI:6319969 /SEG=NC_001136:+38488,38598 /DEF=Subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes aspargine-linked glycosylation of newly synthesized proteins; type I membrane protein of 36 residues that binds Stt3p and Ost3p together in a subcomplex /NOTE=Ost4p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IMP] [pmid 10677492]; go_function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity [goid GO:0004579] [evidence IPI] [pmid 9405463]; go_function: protein binding, bridging [goid GO:0030674] [evidence IDA] [pmid 12810948]; go_process: N-linked glycosylation [goid GO:0006487] [evidence TAS] [pmid 9135133]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IPI] [pmid 9405463] --- --- --- --- --- S0002391 // span:7-29 // numtm:1 S0002391 // OST4 SGDID:S0002391, Chr IV from 38488-38598, Verified ORF // sgd // 11 // --- /// YDL232W // cdna:known chromosome:SGD1:IV:38488:38598:1 gene:YDL232W // ensembl // 11 // --- --- No cerevisiae_gene -1.37669681462243 -1.25885328734437 1.24431310706091 -1.63445862393394 1.00478907917879 Max fold change below threshold 4 1.63445862393394 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778355_at YCL055W.S1 Transcription factor required for induction of KAR3 and CIK1 during mating, also required during meiosis; exists in two forms, a slower-migrating form more abundant during vegetative growth and a faster-migrating form induced by pheromone 1.63422895306393 122.493648529053 101.759380340576 KAR4 742 // karyogamy during conjugation with cellular fusion // inferred from mutant phenotype /// 7067 // mitosis // traceable author statement /// 7126 // meiosis // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement 5634 // nucleus // inferred from curator 30528 // transcription regulator activity // inferred from genetic interaction /// 30528 // transcription regulator activity // inferred from mutant phenotype 91.6813354492188 95.1590042114258 149.82829284668 111.837425231934 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL055W /GEN=KAR4 /DB_XREF=GI:6319795 /SEG=NC_001135:+27929,28936 /DEF=Transcription factor required for induction of KAR3 and CIK1 during mating, also required during meiosis; exists in two forms, a slower-migrating form more abundant during vegetative growth and a faster-migrating form induced by pheromone /NOTE=Kar4p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 8754797]; go_function: transcription regulator activity [goid GO:0030528] [evidence IGI,IMP] [pmid 8754797]; go_process: karyogamy during conjugation with cellular fusion [goid GO:0000742] [evidence IMP] [pmid 8754797]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 8754797]; go_process: mitosis [goid GO:0007067] [evidence TAS] [pmid 9858604]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence TAS] [pmid 9858604] --- --- --- --- --- --- S0000560 // KAR4 SGDID:S0000560, Chr III from 27929-28936, Verified ORF // sgd // 11 // --- /// GENSCAN00000022423 // cdna:Genscan chromosome:SGD1:III:27929:28936:1 // ensembl // 11 // --- /// YCL055W // cdna:known chromosome:SGD1:III:27929:28936:1 gene:YCL055W // ensembl // 11 // --- GENEFINDER00000023292 // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene 1.12767557504226 1.03793213466151 1.48390943521334 1.63422895306393 1.21984943482721 Max fold change below threshold 4 1.63422895306393 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770142_at YEL021W.S1 Orotidine-5'-phosphate (OMP) decarboxylase, catalyzes the sixth enzymatic step in the de novo biosynthesis of pyrimidines, converting OMP into uridine monophosphate (UMP); converts 5-FOA into 5-fluorouracil, a toxic compound 1.63413946149954 830.688873291016 1091.7744140625 URA3 6207 // 'de novo' pyrimidine base biosynthesis // traceable author statement /// 19856 // pyrimidine base biosynthesis // traceable author statement --- 4590 // orotidine-5'-phosphate decarboxylase activity // inferred from direct assay 1039.90625 636.363220214844 1025.01452636719 1143.642578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL021W /GEN=URA3 /DB_XREF=GI:6320814 /SEG=NC_001137:+116167,116970 /DEF=orotidine-5'-phosphate decarboxylase /NOTE=Ura3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: orotidine-5'-phosphate decarboxylase activity [goid GO:0004590] [evidence IDA] [pmid 3311876]; go_process: pyrimidine base biosynthesis [goid GO:0019856] [evidence TAS] [pmid 1499340] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 7.40000009536743 --- S0000747 // URA3 SGDID:S0000747, Chr V from 116167-116970, Verified ORF // sgd // 11 // --- /// GENSCAN00000016786 // cdna:Genscan chromosome:SGD1:V:116167:116970:1 // ensembl // 11 // --- /// GENEFINDER00000019662 // cdna:GeneFinder chromosome:SGD1:V:116167:116970:1 // ensembl // 11 // --- /// YEL021W // cdna:known chromosome:SGD1:V:116167:116970:1 gene:YEL021W // ensembl // 11 // --- --- No cerevisiae_gene -1.05041236108541 -1.63413946149954 1.15169084972353 -1.01452830496519 1.09975546173032 Max fold change below threshold 4 1.63413946149954 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777782_at YOR304C-A.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck 1.63407330038913 115.746685028076 158.879318237305 --- --- 5737 // cytoplasm // inferred from direct assay /// 5933 // bud // inferred from direct assay /// 5935 // bud neck // inferred from direct assay --- 173.000442504883 113.046607971191 118.446762084961 144.758193969727 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR304C-A /GEN=ISW2 /DB_XREF=GI:6324880 /SEG=NC_001147:-888516,888746 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck /NOTE=Yor304c-ap; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 14562095]; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 14562095]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005830 // YOR304C-A SGDID:S0005830, Chr XV from 888746-888516, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017761 // cdna:Genscan chromosome:SGD1:XV:888516:888746:-1 // ensembl // 11 // --- /// YOR304C-A // cdna:known chromosome:SGD1:XV:888516:888746:-1 gene:YOR304C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.19231728644727 -1.53034616084164 1.63407330038913 -1.46057553165355 -1.19509948114621 Max fold change below threshold 4 1.63407330038913 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780032_at YDR320C.S1 Auxilin-like protein involved in vesicular transport; clathrin-binding protein required for uncoating of clathrin-coated vesicles 1.63393112234247 469.764755249023 731.239654541016 SWA2 7029 // ER organization and biogenesis // inferred from mutant phenotype 5789 // endoplasmic reticulum membrane // inferred from direct assay 5515 // protein binding // inferred from sequence similarity 684.331970214844 418.825469970703 520.704040527344 778.147338867188 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR320C /GEN=SWA2 /DB_XREF=GI:6320526 /SEG=NC_001136:-1106088,1108094 /DEF=auxilin-like protein /NOTE=Swa2p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 11553703]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER organization and biogenesis [goid GO:0007029] [evidence IMP] [pmid 11553703] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.0000000467011E-34 /// scop // a.4.2.Methylated DNA-protein cysteine methyltransferase, C-termi // All alpha proteins; DNA/RNA-binding 3-helical bundle; Methylated DNA-protein cysteine methyltransferase, C-terminal domain; Methylated DNA-protein cysteine methyltransferase, C-terminal domain // 3.09999990463257 --- S0002728 // SWA2 SGDID:S0002728, Chr IV from 1108096-1106090, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023520 // cdna:GeneFinder chromosome:SGD1:IV:1106090:1108096:-1 // ensembl // 11 // --- /// GENSCAN00000025349 // cdna:Genscan chromosome:SGD1:IV:1106090:1108096:-1 // ensembl // 11 // --- /// YDR320C // cdna:known chromosome:SGD1:IV:1106090:1108096:-1 gene:YDR320C // ensembl // 11 // --- --- No cerevisiae_gene -1.54560719123081 -1.63393112234247 1.07781346840176 -1.31424363352699 1.13709043671143 Max fold change below threshold 4 1.63393112234247 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774184_at YCR061W.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.63350875886125 1757.02185058594 2067.12963867188 --- --- 5737 // cytoplasm // inferred from direct assay --- 2063.87231445313 1609.48034667969 1904.56335449219 2070.38696289063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR061W /GEN=YIH1 /DB_XREF=GI:10383800 /SEG=NC_001135:+225558,227453 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ycr061wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000657 // span:2-21,101-123,130-152,172-194,320-342,357-379,404-426,451-473,529-551,597-619 // numtm:10 S0000657 // YCR061W SGDID:S0000657, Chr III from 225558-227453, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022501 // cdna:Genscan chromosome:SGD1:III:225996:227453:1 // ensembl // 11 // --- /// GENEFINDER00000023405 // cdna:GeneFinder chromosome:SGD1:III:225996:227453:1 // ensembl // 11 // --- /// YCR061W // cdna:known chromosome:SGD1:III:225558:227453:1 gene:YCR061W // ensembl // 11 // --- --- No cerevisiae_gene -1.63350875886125 -1.28232215988896 -1.10613749994521 -1.08364592313781 1.0031565171895 Max fold change below threshold 4 1.63350875886125 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778325_at YPL061W.S1 Cytosolic aldehyde dehydrogenase that is activated by Mg2+ and utilizes NADP+ as the preferred coenzyme; required for the conversion of acetaldehyde to acetate; constitutively expressed 1.63350800400019 7477.3427734375 7374.68359375 ALD6 19413 // acetate biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from sequence similarity /// 5737 // cytoplasm // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from direct assay 4028 // aldehyde dehydrogenase activity // inferred from mutant phenotype /// 4028 // aldehyde dehydrogenase activity // inferred from sequence similarity 8817.9697265625 9556.505859375 5398.1796875 5931.3974609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL061W /GEN=ALD6 /DB_XREF=GI:6325196 /SEG=NC_001148:+432583,434085 /DEF=Utilizes NADP+ as the preferred coenzyme. Activated by Mg2+. /NOTE=Ald6p; go_component: cytoplasm [goid GO:0005737] [evidence IMP,ISS] [pmid 9392076]; go_function: aldehyde dehydrogenase activity [goid GO:0004028] [evidence IMP,ISS] [pmid 9392076]; go_process: acetate biosynthesis [goid GO:0019413] [evidence IMP] [pmid 11870853] --- --- --- --- --- --- S0005982 // ALD6 SGDID:S0005982, Chr XVI from 432585-434087, Verified ORF // sgd // 11 // --- /// GENSCAN00000017141 // cdna:Genscan chromosome:SGD1:XVI:432585:434087:1 // ensembl // 11 // --- /// GENEFINDER00000020820 // cdna:GeneFinder chromosome:SGD1:XVI:432585:434087:1 // ensembl // 11 // --- /// YPL061W // cdna:known chromosome:SGD1:XVI:432585:434087:1 gene:YPL061W // ensembl // 11 // --- --- No cerevisiae_gene -1.41450224943993 1.08375353462462 -1.26399675797802 -1.63350800400019 -1.48665972641947 Max fold change below threshold 4 1.63350800400019 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774166_at YPL021W.S1 Non-essential protein of unconfirmed function; affects pre-rRNA processing, may act as a negative regulator of the transcription of genes involved in pseudohyphal growth; homologous to Srd1p 1.63328796362737 20.3598136901855 42.3140563964844 ECM23 7124 // pseudohyphal growth // inferred from mutant phenotype --- --- 32.5305480957031 19.91721534729 20.8024120330811 52.0975646972656 0.000244141003349796 0.000244141003349796 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL021W /GEN=ECM23 /DB_XREF=GI:6325236 /SEG=NC_001148:+511097,511660 /DEF=Non-essential protein of unconfirmed function; affects pre-rRNA processing, may act as a negative regulator of the transcription of genes involved in pseudohyphal growth; homologous to Srd1p /NOTE=Ecm23p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 11889490] --- --- --- --- --- --- S0005942 // ECM23 SGDID:S0005942, Chr XVI from 511099-511662, Verified ORF // sgd // 11 // --- /// YPL021W // cdna:known chromosome:SGD1:XVI:511099:511662:1 gene:YPL021W // ensembl // 11 // --- --- No cerevisiae_gene -1.50073209121857 -1.63328796362737 -1.35090770996845 -1.56378731677708 1.60149667764581 Max fold change below threshold 4 1.63328796362737 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773901_at YDR228C.S1 mRNA 3' end processing factor, essential component of cleavage and polyadenylation factor IA (CF IA), involved in pre-mRNA 3' end processing and in transcription termination; binds C-terminal domain of largest subunit of RNA pol II (Rpo21p) 1.63324976785215 406.953186035156 694.059967041016 PCF11 6369 // transcription termination from RNA polymerase II promoter // inferred from direct assay /// 6378 // mRNA polyadenylylation // inferred from direct assay /// 6379 // mRNA cleavage // inferred from direct assay 5849 // mRNA cleavage factor complex // inferred from physical interaction 5515 // protein binding // inferred from direct assay 643.572082519531 419.862487792969 394.043884277344 744.5478515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR228C /GEN=PCF11 /DB_XREF=GI:6320434 /SEG=NC_001136:-921918,923798 /DEF=pre-mRNA cleavage and polyadenylation factor I component, interacts with Rna14p and Rna15p /NOTE=Pcf11p; go_component: mRNA cleavage factor complex [goid GO:0005849] [evidence IPI] [pmid 11344258]; go_function: cleavage/polyadenylation specificity factor activity [goid GO:0030364] [evidence IDA] [pmid 11344258]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 12727883]; go_process: mRNA cleavage [goid GO:0006379] [evidence IDA] [pmid 11344258]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IDA] [pmid 11344258]; go_process: transcription termination from Pol II promoter [goid GO:0006369] [evidence IDA] [pmid 12727883] --- --- --- --- --- --- S0002636 // PCF11 SGDID:S0002636, Chr IV from 923800-921920, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023843 // cdna:GeneFinder chromosome:SGD1:IV:921920:923800:-1 // ensembl // 11 // --- /// GENSCAN00000025276 // cdna:Genscan chromosome:SGD1:IV:921920:922729:-1 // ensembl // 11 // --- /// YDR228C // cdna:known chromosome:SGD1:IV:921920:923800:-1 gene:YDR228C // ensembl // 11 // --- --- No cerevisiae_gene 1.14791965505485 -1.53281634161343 -1.35146261689999 -1.63324976785215 1.15689892676459 Max fold change below threshold 4 1.63324976785215 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778914_at YJL160C.S1 Hypothetical protein 1.63312159443615 129.583110809326 118.606666564941 --- --- --- --- 120.243881225586 115.147590637207 144.018630981445 116.969451904297 0.00122069998178631 0.00195312988944352 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL160C /GEN=JJJ2 /DB_XREF=GI:42742254 /SEG=NC_001142:-117957,118820 /DEF=Hypothetical ORF /NOTE=Yjl160cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003696 // YJL160C SGDID:S0003696, Chr X from 118820-117957, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024016 // cdna:Genscan chromosome:SGD1:X:117957:118820:-1 // ensembl // 11 // --- /// GENEFINDER00000024395 // cdna:GeneFinder chromosome:SGD1:X:117957:118820:-1 // ensembl // 11 // --- /// YJL160C // cdna:known chromosome:SGD1:X:117957:118820:-1 gene:YJL160C // ensembl // 11 // --- --- No cerevisiae_gene 1.63312159443615 -1.04425876876951 -1.04209953294445 1.19772107747634 -1.02799388445428 Max fold change below threshold 4 1.63312159443615 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776162_at YPR011C.S1 Hypothetical protein 1.63311262209521 445.23828125 413.872619628906 --- 6810 // transport // inferred from sequence similarity 5743 // mitochondrial inner membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity 348.544525146484 321.264099121094 569.212463378906 479.200714111328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR011C /GEN=RPA135 /DB_XREF=GI:6325268 /SEG=NC_001148:-583057,584037 /DEF=Hypothetical ORF /NOTE=Ypr011cp; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence ISS] [pmid 10930523]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 10930523]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 10930523] --- --- --- --- --- --- S0006215 // YPR011C SGDID:S0006215, Chr XVI from 584039-583059, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017195 // cdna:Genscan chromosome:SGD1:XVI:583059:584039:-1 // ensembl // 11 // --- /// YPR011C // cdna:known chromosome:SGD1:XVI:583059:584039:-1 gene:YPR011C // ensembl // 11 // --- --- No cerevisiae_gene -1.1775140736409 -1.08491588727164 1.18501428977069 1.63311262209521 1.37486226160039 Max fold change below threshold 4 1.63311262209521 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sc-RIP1-M_at AFFX-r2-Sc-RIP1-M Ubiquinol-cytochrome-c reductase, a Rieske iron-sulfur protein of the mitochondrial cytochrome bc1 complex; transfers electrons from ubiquinol to cytochrome c1 during respiration 1.63284519753095 2953.23168945313 1875.52478027344 RIP1 6122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from direct assay /// 9060 // aerobic respiration // inferred from mutant phenotype 5750 // respiratory chain complex III (sensu Eukaryota) // inferred from direct assay 8121 // ubiquinol-cytochrome-c reductase activity // inferred from direct assay 1878.0927734375 3066.634765625 2839.82861328125 1872.95678710938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=RIP1 SGD:YEL024W Rieske iron-sulfur protein of the mitochondrial cytochrome bc1 complex (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- S0000750 // RIP1 SGDID:S0000750, Chr V from 107260-107907, Verified ORF // sgd // 11 // --- /// GENSCAN00000016783 // cdna:Genscan chromosome:SGD1:V:107260:107907:1 // ensembl // 11 // --- /// GENEFINDER00000019616 // cdna:GeneFinder chromosome:SGD1:V:107302:107907:1 // ensembl // 11 // --- /// YEL024W // cdna:known chromosome:SGD1:V:107260:107907:1 gene:YEL024W // ensembl // 11 // --- --- AFFX_control cerevisiae_gene -1.0257649048853 1.63284519753095 1.13126759142602 1.51208111412061 -1.00274218089999 Max fold change below threshold 4 1.63284519753095 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774209_at YPR171W.S1 Adapter that links synaptojanins Inp2p and Inp53p to the cortical actin cytoskeleton 1.63283834965296 320.273941040039 547.625518798828 BSP1 147 // actin cortical patch assembly // RCA /// 30036 // actin cytoskeleton organization and biogenesis // inferred from mutant phenotype 5624 // membrane fraction // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 30479 // actin cortical patch // inferred from direct assay 30674 // protein binding, bridging // inferred from direct assay 500.929870605469 306.784729003906 333.763153076172 594.321166992188 0.000732421991415322 0.00415039015933871 0.00415039015933871 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR171W /GEN=BSP1 /DB_XREF=GI:6325429 /SEG=NC_001148:+883822,885552 /DEF=Binding protein of Synaptojanin Polyphosphoinositide phosphatase domain; may function to link synaptojanins Inp52p and Inp53p to the cortical actin cytoskeleton /NOTE=Bsp1p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 12606027]; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 12606027]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 12606027]; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 12606027]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: actin cortical patch assembly [goid GO:0000147] [evidence TAS] [pmid 14566057]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence IMP] [pmid 12606027] --- --- --- --- --- --- S0006375 // BSP1 SGDID:S0006375, Chr XVI from 883824-885554, Verified ORF // sgd // 10 // --- /// GENEFINDER00000020900 // cdna:GeneFinder chromosome:SGD1:XVI:883824:885554:1 // ensembl // 10 // --- /// GENSCAN00000017315 // cdna:Genscan chromosome:SGD1:XVI:884268:885554:1 // ensembl // 10 // --- /// YPR171W // cdna:known chromosome:SGD1:XVI:883824:885554:1 gene:YPR171W // ensembl // 10 // --- --- No cerevisiae_gene 1.09235777944704 -1.63283834965296 -1.04008654002188 -1.50085432136107 1.18643587030224 Max fold change below threshold 4 1.63283834965296 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779682_at YJL130C.S1 Bifunctional carbamoylphosphate synthetase (CPSase)-aspartate transcarbamylase (ATCase), catalyzes the first two enzymatic steps in the de novo biosynthesis of pyrimidines; both activities are subject to feedback inhibition by UTP 1.63278066390584 3356.38647460938 2158.71838378906 URA2 6207 // 'de novo' pyrimidine base biosynthesis // traceable author statement /// 6541 // glutamine metabolism // inferred from direct assay /// 19856 // pyrimidine base biosynthesis // inferred from direct assay 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4070 // aspartate carbamoyltransferase activity // inferred from direct assay 2175.44702148438 3552.02783203125 3160.7451171875 2141.98974609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL130C /GEN=URA2 /DB_XREF=GI:6322331 /SEG=NC_001142:-165641,172285 /DEF=Multifunctional carbamoylphosphate synthetase (CPSase)-aspartate transcarbamylase (ATCase) that catalyzes the two first reactions of the pyrimidine pathway /NOTE=Ura2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11015727]; go_function: aspartate carbamoyltransferase activity [goid GO:0004070] [evidence IDA] [pmid 10446140]; go_process: pyrimidine base biosynthesis [goid GO:0019856] [evidence IDA] [pmid 181668] --- --- --- --- --- --- S0003666 // URA2 SGDID:S0003666, Chr X from 172285-165641, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024037 // cdna:Genscan chromosome:SGD1:X:165641:172285:-1 // ensembl // 11 // --- /// GENEFINDER00000024499 // cdna:GeneFinder chromosome:SGD1:X:165641:172285:-1 // ensembl // 11 // --- /// YJL130C // cdna:known chromosome:SGD1:X:165641:172285:-1 gene:YJL130C // ensembl // 11 // --- --- No cerevisiae_gene 1.16256099034962 1.63278066390584 -1.25094389738438 1.45291753187849 -1.01561971781221 Max fold change below threshold 4 1.63278066390584 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778203_at YOR161C.S1 Protein of unknown function; has similarity to Torpedo californica tCTL1p, which is postulated to be a choline transporter, neither null mutation nor overexpression affects choline transport 1.63266696750253 6616.9931640625 6621.916015625 PNS1 --- 5887 // integral to plasma membrane // inferred from sequence similarity 15220 // choline transporter activity // inferred from mutant phenotype 7748.46044921875 8488.0947265625 4745.8916015625 5495.37158203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR161C /GEN=PNS1 /DB_XREF=GI:6324735 /SEG=NC_001147:-636939,638558 /DEF=Protein of unknown function; has similarity to Torpedo californica tCTL1p, which is postulated to be a choline transporter, neither null mutation nor overexpression affects choline transport /NOTE=Pns1p; go_component: integral to plasma membrane [goid GO:0005887] [evidence ISS] [pmid 10923024]; go_function: choline transporter activity [goid GO:0015220] [evidence IMP] [pmid 15002745]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005687 // span:83-105,129-151,158-180,185-202,228-250,277-299,335-357,372-391,434-456,471-490 // numtm:10 S0005687 // PNS1 SGDID:S0005687, Chr XV from 638558-636939, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017585 // cdna:Genscan chromosome:SGD1:XV:636939:638558:-1 // ensembl // 11 // --- /// GENEFINDER00000022809 // cdna:GeneFinder chromosome:SGD1:XV:636939:638033:-1 // ensembl // 11 // --- /// YOR161C // cdna:known chromosome:SGD1:XV:636939:638558:-1 gene:YOR161C // ensembl // 11 // --- --- No cerevisiae_gene -1.60800080578144 1.09545564337472 -1.31309647003763 -1.63266696750253 -1.40999754676365 Max fold change below threshold 4 1.63266696750253 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sp-ACT1-3_at AFFX-r2-Sp-ACT1-3 --- 1.63244971941528 --- --- --- --- 17.6045703887939 15.3966302871704 21.1649188995361 15.765814781189 0.149657994508743 0.194580003619194 0.0375977009534836 0.0676269978284836 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=ACT1 actin (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPBC32H8.12c // |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- AFFX_control No 1.07046961141902 -1.14340411248709 -1.63244971941528 1.20224001109442 -1.11662927879877 Max fold change below threshold 4 1.63244971941528 Max fold change below threshold APAAPA No 4 0 AAPA 3 1 0 No No x = 1
1777225_at YER133W.S1 Catalytic subunit of type 1 serine/threonine protein phosphatase, involved in many processes including glycogen metabolism, sporulation, and mitosis; interacts with multiple regulatory subunits; predominantly isolated with Sds22p 1.63231628771597 2165.30285644531 1418.81140136719 GLC7 903 // cellular morphogenesis during vegetative growth // inferred from genetic interaction /// 5977 // glycogen metabolism // inferred from mutant phenotype /// 6109 // regulation of carbohydrate metabolism // inferred from genetic interaction /// 6109 // regulation of carbohydrate metabolism // inferred from physical interaction /// 6109 // regulation of carbohydrate metabolism // traceable author statement /// 6365 // 35S primary transcript processing // inferred from mutant phenotype /// 7094 // mitotic spindle checkpoint // inferred from mutant phenotype /// 7126 // meiosis // inferred from physical interaction /// 9408 // response to heat // inferred from physical interaction /// 9408 // response to heat // inferred from mutant phenotype /// 30846 // transcription termination from Pol II promoter, RNA polymerase(A) coupled // inferred from physical interaction /// 30847 // transcription termination from Pol II promoter, RNA polymerase(A)-independent // inferred from physical interaction 164 // protein phosphatase type 1 complex // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay /// 5847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from physical interaction /// 5935 // bud neck // inferred from direct assay 163 // protein phosphatase type 1 activity // inferred from direct assay /// 163 // protein phosphatase type 1 activity // traceable author statement /// 3723 // RNA binding // inferred from curator 1385.833984375 2068.486328125 2262.11938476563 1451.78881835938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER133W /GEN=GLC7 /DB_XREF=GI:6320980 /SEG=NC_001137:+432491,433954 /DEF=Glycogen accumulation. Gip1p-Glc7p phosphatase complex is required for proper septin organization and initiation of spore wall formation during sporulation. /NOTE=Glc7p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 11412094]; go_component: mRNA cleavage and polyadenylation specificity factor complex [goid GO:0005847] [evidence IPI] [pmid 12819204]; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11412094]; go_component: protein phosphatase type 1 complex [goid GO:0000164] [evidence IDA] [pmid 8289829]; go_function: protein phosphatase type 1 activity [goid GO:0000163] [evidence TAS] [pmid 11412094]; go_function: protein phosphatase type 1 activity [goid GO:0000163] [evidence IDA] [pmid 1660885]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence IMP] [pmid 12837249]; go_process: cellular morphogenesis during vegetative growth [goid GO:0000903] [evidence IGI] [pmid 12477789]; go_process: glycogen metabolism [goid GO:0005977] [evidence IMP] [pmid 1660885]; go_process: meiosis [goid GO:0007126] [evidence IPI] [pmid 8754819]; go_process: mitotic spindle checkpoint [goid GO:0007094] [evidence IMP] [pmid 10072380]; go_process: regulation of carbohydrate metabolism [goid GO:0006109] [evidence IGI,IPI,TAS] [pmid 12167649]; go_process: response to heat [goid GO:0009408] [evidence IMP,IPI] [pmid 10207049]; go_process: transcription termination from Pol II promoter, poly(A) coupled [goid GO:0030846] [evidence IPI] [pmid 12819204]; go_process: transcription termination from Pol II promoter, poly(A)-independent [goid GO:0030847] [evidence IPI] [pmid 12819204] --- --- --- --- --- --- S0000935 // GLC7 SGDID:S0000935, Chr V from 432491-432667,433193-433954, intron sequence removed, Verified ORF // sgd // 11 // --- /// YER133W // cdna:known chromosome:SGD1:V:432491:433954:1 gene:YER133W // ensembl // 11 // --- --- No cerevisiae_gene 1.2142141394439 1.49259316155237 1.34379435047995 1.63231628771597 1.04759216091394 Max fold change below threshold 4 1.63231628771597 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772697_at YKL193C.S1 Conserved nuclear regulatory subunit of Glc7p type 1 protein serine-threonine phosphatase (PP1), functions positively with Glc7p to promote dephosphorylation of nuclear substrates required for chromosome transmission during mitosis 1.63175971116183 1516.03979492188 2209.74011230469 SDS22 6605 // protein targeting // inferred from genetic interaction /// 6605 // protein targeting // inferred from mutant phenotype /// 6605 // protein targeting // inferred from physical interaction /// 7059 // chromosome segregation // inferred from genetic interaction /// 7059 // chromosome segregation // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8599 // protein phosphatase type 1 regulator activity // traceable author statement /// 30234 // enzyme regulator activity // traceable author statement 2245.853515625 1655.7412109375 1376.33837890625 2173.62670898438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL193C /GEN=SDS22 /DB_XREF=GI:6322655 /SEG=NC_001143:-78871,79887 /DEF=Interacts with and may be a positive regulator of GLC7 which encodes type1 protein phosphatase /NOTE=Sds22p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: enzyme regulator activity [goid GO:0030234] [evidence TAS] [pmid 12127071]; go_function: protein phosphatase type 1 regulator activity [goid GO:0008599] [evidence TAS] [pmid 11412094]; go_process: chromosome segregation [goid GO:0007059] [evidence IGI,IMP] [pmid 11801737]; go_process: protein targeting [goid GO:0006605] [evidence IGI,IMP,IPI] [pmid 11801737] --- --- --- --- --- --- S0001676 // SDS22 SGDID:S0001676, Chr XI from 79887-78871, reverse complement, Verified ORF // sgd // 11 // --- /// YKL193C // cdna:known chromosome:SGD1:XI:78871:79887:-1 gene:YKL193C // ensembl // 11 // --- --- No cerevisiae_gene -1.24333944797392 -1.35640370656316 -1.10840211684073 -1.63175971116183 -1.03322870773629 Max fold change below threshold 4 1.63175971116183 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772247_at YPR122W.S1 Haploid specific endoprotease that performs one of two N-terminal cleavages during maturation of a-factor mating pheromone; required for axial budding pattern of haploid cells 1.63161739701244 43.5126113891602 55.3542976379395 AXL1 282 // bud site selection // traceable author statement /// 747 // conjugation with cellular fusion // non-traceable author statement /// 7120 // axial bud site selection // traceable author statement /// 7323 // peptide pheromone maturation // inferred from mutant phenotype /// 7323 // peptide pheromone maturation // inferred from sequence similarity 5935 // bud neck // inferred from direct assay /// 16021 // integral to membrane // traceable author statement /// 43332 // mating projection tip // inferred from direct assay 4222 // metalloendopeptidase activity // inferred from mutant phenotype /// 4222 // metalloendopeptidase activity // inferred from sequence similarity 49.3811111450195 43.5127944946289 43.5124282836914 61.3274841308594 0.000244141003349796 0.00415039015933871 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR122W /GEN=AXL1 /DB_XREF=GI:6325379 /SEG=NC_001148:+782039,785665 /DEF=Haploid specific endoprotease that performs one of two N-terminal cleavages during maturation of a-factor mating pheromone; required for axial budding pattern of haploid cells /NOTE=Axl1p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 12176366]; go_component: integral to membrane [goid GO:0016021] [evidence TAS] [pmid 9725832]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 12176366]; go_function: metalloendopeptidase activity [goid GO:0004222] [evidence IMP,ISS] [pmid 7569998]; go_process: axial budding [goid GO:0007120] [evidence TAS] [pmid 9891811]; go_process: bud site selection [goid GO:0000282] [evidence TAS] [pmid 9891811]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence NAS] [pmid 9135999]; go_process: peptide pheromone maturation [goid GO:0007323] [evidence IMP,ISS] [pmid 7569998] --- --- --- --- --- --- S0006326 // AXL1 SGDID:S0006326, Chr XVI from 782041-785667, Verified ORF // sgd // 11 // --- /// GENSCAN00000017276 // cdna:Genscan chromosome:SGD1:XVI:783004:785667:1 // ensembl // 11 // --- /// YPR122W // cdna:known chromosome:SGD1:XVI:782041:785667:1 gene:YPR122W // ensembl // 11 // --- --- No cerevisiae_gene -1.63161739701244 -1.13486416394412 1.52846690473097 -1.13487371523064 1.24192191525939 Max fold change below threshold 4 1.63161739701244 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769955_at YGR088W.S1 Cytosolic catalase T, has a role in protection from oxidative damage by hydrogen peroxide 1.63116079914844 8650.98803710938 7852.77685546875 CTT1 6950 // response to stress // inferred from direct assay 5737 // cytoplasm // traceable author statement 4096 // catalase activity // inferred from sequence similarity 9222.76953125 10945.5849609375 6356.39111328125 6482.7841796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR088W /GEN=CTT1 /DB_XREF=GI:6321525 /SEG=NC_001139:+654603,656324 /DEF=Cytosolic catalase T, has a role in protection from oxidative damage by hydrogen peroxide /NOTE=Ctt1p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 2542766]; go_function: catalase activity [goid GO:0004096] [evidence ISS] [pmid 3536508]; go_process: response to stress [goid GO:0006950] [evidence IDA] [pmid 2061315] --- --- --- --- --- --- S0003320 // CTT1 SGDID:S0003320, Chr VII from 654605-656326, Verified ORF // sgd // 11 // --- /// GENSCAN00000019407 // cdna:Genscan chromosome:SGD1:VII:654638:656326:1 // ensembl // 11 // --- /// GENEFINDER00000021417 // cdna:GeneFinder chromosome:SGD1:VII:654638:656326:1 // ensembl // 11 // --- /// YGR088W // cdna:known chromosome:SGD1:VII:654605:656326:1 gene:YGR088W // ensembl // 11 // --- --- No cerevisiae_gene -1.63116079914844 1.18680022566432 -1.28324839933917 -1.45094431209238 -1.42265564850172 Max fold change below threshold 4 1.63116079914844 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775822_at YGL243W.S1 tRNA-specific adenosine deaminase, deaminates adenosine-37 to inosine in tRNA-Ala 1.63069731859361 367.181762695313 588.024658203125 TAD1 6400 // tRNA modification // inferred from direct assay 5634 // nucleus // inferred from direct assay 8251 // tRNA specific adenosine deaminase activity // inferred from direct assay 544.079711914063 333.648498535156 400.715026855469 631.969604492188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL243W /GEN=TAD1 /DB_XREF=GI:6321194 /SEG=NC_001139:+43307,44509 /DEF=Deaminates adenosine-37 to inosine in eukaryotic tRNA-Ala. /NOTE=Tad1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: tRNA specific adenosine deaminase activity [goid GO:0008251] [evidence IDA] [pmid 9707437]; go_process: tRNA modification [goid GO:0006400] [evidence IDA] [pmid 9707437] --- --- --- --- --- --- S0003212 // TAD1 SGDID:S0003212, Chr VII from 43307-44509, Verified ORF // sgd // 11 // --- /// YGL243W // cdna:known chromosome:SGD1:VII:43307:44509:1 gene:YGL243W // ensembl // 11 // --- --- No cerevisiae_gene -1.25395987517797 -1.63069731859361 1.60109082114137 -1.3577721708707 1.16153863239805 Max fold change below threshold 4 1.63069731859361 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778260_at YGR192C.S1 Glyceraldehyde-3-phosphate dehydrogenase, isozyme 2, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall /// Glyceraldehyde-3-phosphate dehydrogenase, isozyme 3, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall 1.630401807546 TDH2 /// TDH3 6094 // gluconeogenesis // inferred from expression pattern /// 6096 // glycolysis // inferred from expression pattern 5737 // cytoplasm // inferred from direct assay /// 5811 // lipid particle // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay 4365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // inferred from direct assay 10750.681640625 13577.541015625 6937.39599609375 6593.884765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR192C /GEN=TDH3 /DB_XREF=GI:6321631 /SEG=NC_001139:-882815,883813 /DEF=Glyceraldehyde-3-phosphate dehydrogenase 3 /NOTE=Tdh3p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 11158358]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 10515935]; go_function: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity [goid GO:0004365] [evidence IDA] [pmid 3905788]; go_process: gluconeogenesis [goid GO:0006094] [evidence TAS]; go_process: glycolysis [goid GO:0006096] [evidence TAS] --- --- --- --- --- --- S0003424 // TDH3 SGDID:S0003424, Chr VII from 883815-882817, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000019490 // cdna:Genscan chromosome:SGD1:VII:882817:883815:-1 // ensembl // 10 // --- /// GENEFINDER00000021506 // cdna:GeneFinder chromosome:SGD1:VII:882817:883815:-1 // ensembl // 10 // --- /// YGR192C // cdna:known chromosome:SGD1:VII:882817:883815:-1 gene:YGR192C // ensembl // 10 // --- --- No cerevisiae_gene -1.57577959321613 1.26294698973484 -1.26178701175331 -1.54967103603116 -1.630401807546 Max fold change below threshold 4 1.630401807546 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778160_at YDR028C.S1 Regulatory subunit of type 1 protein phosphatase Glc7p, involved in negative regulation of glucose-repressible genes; involved in RNA processing 1.63003137526961 1056.93823242188 999.015319824219 REG1 122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 5977 // glycogen metabolism // traceable author statement /// 6109 // regulation of carbohydrate metabolism // inferred from genetic interaction /// 6109 // regulation of carbohydrate metabolism // traceable author statement /// 6109 // regulation of carbohydrate metabolism // inferred from physical interaction 164 // protein phosphatase type 1 complex // traceable author statement /// 5737 // cytoplasm // inferred from direct assay 163 // protein phosphatase type 1 activity // traceable author statement /// 8599 // protein phosphatase type 1 regulator activity // traceable author statement 953.661376953125 910.65771484375 1203.21875 1044.36926269531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR028C /GEN=REG1 /DB_XREF=GI:6320231 /SEG=NC_001136:-497831,500875 /DEF=The reg1 locus encodes a gene which is involved in RNA processing and is a negative regulator of glucose-repressible genes. /NOTE=Reg1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10454550]; go_component: protein phosphatase type 1 complex [goid GO:0000164] [evidence TAS] [pmid 10454550]; go_function: protein phosphatase type 1 activity [goid GO:0000163] [evidence TAS] [pmid 10454550]; go_function: protein phosphatase type 1 regulator activity [goid GO:0008599] [evidence TAS] [pmid 11412094]; go_process: cell growth and/or maintenance [goid GO:0008151] [evidence TAS] [pmid 10454550]; go_process: glycogen metabolism [goid GO:0005977] [evidence TAS] [pmid 10454550]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence TAS] [pmid 10454550]; go_process: regulation of carbohydrate metabolism [goid GO:0006109] [evidence IGI,IPI,TAS] [pmid 12167649] --- --- --- --- --- --- S0002435 // REG1 SGDID:S0002435, Chr IV from 500875-497831, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023456 // cdna:GeneFinder chromosome:SGD1:IV:497831:500875:-1 // ensembl // 11 // --- /// GENSCAN00000025118 // cdna:Genscan chromosome:SGD1:IV:497831:500875:-1 // ensembl // 11 // --- /// YDR028C // cdna:known chromosome:SGD1:IV:497831:500875:-1 gene:YDR028C // ensembl // 11 // --- --- No cerevisiae_gene -1.63003137526961 -1.04722264074461 1.14469431521247 1.26168342252068 1.09511540252578 Max fold change below threshold 4 1.63003137526961 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773286_at YPR134W.S1 Nuclear encoded protein needed for efficient splicing of mitochondrial COX1 aI5beta intron; mss18 mutations block cleavage of 5' exon - intron junction; phenotype of intronless strain suggests additional functions 1.62956997012535 420.994384765625 561.419097900391 MSS18 372 // Group I intron splicing // inferred from direct assay /// 372 // Group I intron splicing // inferred from mutant phenotype 5739 // mitochondrion // inferred from curator /// 5739 // mitochondrion // inferred from direct assay --- 514.406921386719 315.670349121094 526.318420410156 608.431274414063 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR134W /GEN=MSS18 /DB_XREF=GI:6325392 /SEG=NC_001148:+798045,798851 /DEF=Protein involved in splicing intron a15beta of COX1 /NOTE=Mss18p; go_component: mitochondrion [goid GO:0005739] [evidence IC] [pmid 2842150]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Group I intron splicing [goid GO:0000372] [evidence IDA,IMP] [pmid 2842150] --- --- --- --- --- --- S0006338 // MSS18 SGDID:S0006338, Chr XVI from 798047-798853, Verified ORF // sgd // 11 // --- /// GENSCAN00000017284 // cdna:Genscan chromosome:SGD1:XVI:798047:798853:1 // ensembl // 11 // --- /// GENEFINDER00000020874 // cdna:GeneFinder chromosome:SGD1:XVI:798320:798853:1 // ensembl // 9 // --- /// YPR134W // cdna:known chromosome:SGD1:XVI:798047:798853:1 gene:YPR134W // ensembl // 11 // --- --- No cerevisiae_gene -1.01036790666876 -1.62956997012535 1.42865645085105 1.02315579073339 1.18278205272564 Max fold change below threshold 4 1.62956997012535 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769743_s_at YDL191W.S1 Protein component of the large (60S) ribosomal subunit, identical to Rpl35Bp and has similarity to rat L35 ribosomal protein /// Protein component of the large (60S) ribosomal subunit, identical to Rpl35Ap and has similarity to rat L35 ribosomal protein 1.62886605714786 3620.98010253906 4234.68383789063 RPL35A /// RPL35B 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 4744.6494140625 4329.10595703125 2912.85424804688 3724.71826171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL191W /GEN=RPL35A /DB_XREF=GI:6320010 /SEG=NC_001136:+117665,118518 /DEF=Protein component of the large (60S) ribosomal subunit, identical to Rpl35Bp and has similarity to rat L35 ribosomal protein /NOTE=Rpl35ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0002295 // RPL35B SGDID:S0002295, Chr IV from 217600-217602,218008-218367, intron sequence removed, Verified ORF // sgd // 10 // --- /// S0002350 // RPL35A SGDID:S0002350, Chr IV from 117665-117667,118159-118518, intron sequence removed, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023922 // cdna:GeneFinder chromosome:SGD1:IV:116322:118518:1 // ensembl // 10 // --- /// GENEFINDER00000023655 // cdna:GeneFinder chromosome:SGD1:IV:216529:218367:1 // ensembl // 10 // --- /// YDL191W // cdna:known chromosome:SGD1:IV:117665:118518:1 gene:YDL191W // ensembl // 10 // --- /// YDL136W // cdna:known chromosome:SGD1:IV:217600:218367:1 gene:YDL136W // ensembl // 10 // --- --- No cerevisiae_gene -1.02263833867926 -1.09598828514611 -1.48562381941424 -1.62886605714786 -1.27382773156999 Max fold change below threshold 4 1.62886605714786 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769875_at YLR240W.S1 Phosphatidylinositol 3-kinase responsible for the synthesis of phosphatidylinositol 3-phosphate; forms membrane-associated signal transduction complex with Vps15p to regulate protein sorting; similar to p110 subunit of mammalian PI 3-kinase 1.62876272515119 1052.06161499023 765.516387939453 VPS34 11 // vacuole inheritance // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from direct assay /// 6623 // protein-vacuolar targeting // inferred from direct assay /// 7034 // vacuolar transport // inferred from mutant phenotype /// 46854 // phosphoinositide phosphorylation // inferred from direct assay /// 48017 // inositol lipid-mediated signaling // traceable author statement 5624 // membrane fraction // inferred from direct assay 4672 // protein kinase activity // inferred from direct assay /// 16303 // phosphatidylinositol 3-kinase activity // inferred from direct assay 709.216491699219 951.316711425781 1152.80651855469 821.816284179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR240W /GEN=VPS34 /DB_XREF=GI:6323269 /SEG=NC_001144:+617535,620162 /DEF=phosphatidylinositol 3-kinase /NOTE=Vps34p; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 7721937]; go_function: phosphatidylinositol 3-kinase activity [goid GO:0016303] [evidence IDA] [pmid 7989323]; go_function: protein kinase activity [goid GO:0004672] [evidence IDA] [pmid 7989323]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 7989323]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IDA] [pmid 7989323]; go_process: vacuolar transport [goid GO:0007034] [evidence IMP] [pmid 2247081]; go_process: vacuole inheritance [goid GO:0000011] [evidence IMP] [pmid 2247081] --- --- --- --- --- --- S0004230 // VPS34 SGDID:S0004230, Chr XII from 617535-620162, Verified ORF // sgd // 11 // --- /// GENSCAN00000018006 // cdna:Genscan chromosome:SGD1:XII:617535:620162:1 // ensembl // 11 // --- /// GENEFINDER00000024676 // cdna:GeneFinder chromosome:SGD1:XII:617535:620162:1 // ensembl // 11 // --- /// YLR240W // cdna:known chromosome:SGD1:XII:617535:620162:1 gene:YLR240W // ensembl // 11 // --- --- No cerevisiae_gene -1.36167896221898 1.34136293016327 1.62876272515119 1.62546490676305 1.15876646101487 Max fold change below threshold 4 1.62876272515119 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777174_at YDL190C.S1 Ubiquitin chain assembly factor (E4) that cooperates with a ubiquitin-activating enzyme (E1), a ubiquitin-conjugating enzyme (E2), and a ubiquitin protein ligase (E3) to conjugate ubiquitin to substrates; also functions as an E3 1.62875263278321 729.113952636719 1266.64520263672 UFD2 6511 // ubiquitin-dependent protein catabolism // inferred from mutant phenotype /// 6511 // ubiquitin-dependent protein catabolism // inferred from physical interaction /// 6950 // response to stress // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4840 // ubiquitin conjugating enzyme activity // inferred from mutant phenotype /// 4840 // ubiquitin conjugating enzyme activity // inferred from physical interaction 1186.103515625 728.228149414063 729.999755859375 1347.18688964844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL190C /GEN=UFD2 /DB_XREF=GI:6320011 /SEG=NC_001136:-118708,121593 /DEF=Ubiquitin chain assembly factor (E4) that cooperates with a ubiquitin-activating enzyme (E1), a ubiquitin-conjugating enzyme (E2), and a ubiquitin protein ligase (E3) to conjugate ubiquitin to substrates; also functions as an E3 /NOTE=Ufd2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: ubiquitin conjugating enzyme activity [goid GO:0004840] [evidence IMP,IPI] [pmid 10089879]; go_process: response to stress [goid GO:0006950] [evidence IMP] [pmid 10089879]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence IMP,IPI] [pmid 10089879] --- --- --- --- --- --- S0002349 // UFD2 SGDID:S0002349, Chr IV from 121593-118708, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023722 // cdna:GeneFinder chromosome:SGD1:IV:118708:121593:-1 // ensembl // 11 // --- /// GENSCAN00000024961 // cdna:Genscan chromosome:SGD1:IV:118708:121593:-1 // ensembl // 11 // --- /// YDL190C // cdna:known chromosome:SGD1:IV:118708:121593:-1 gene:YDL190C // ensembl // 11 // --- --- No cerevisiae_gene -1.27681647918174 -1.62875263278321 -1.04693073889914 -1.62479987986939 1.13580886651243 Max fold change below threshold 4 1.62875263278321 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774156_at YMR029C.S1 Protein involved in G1 cell cycle arrest in response to pheromone, in a pathway different from the Far1p-dependent pathway; interacts with Far3p, Far7p, Far9p, Far10p, and Far11p 1.6285857759224 1196.94171142578 995.740203857422 FAR8 751 // cell cycle arrest in response to pheromone // inferred from mutant phenotype /// 751 // cell cycle arrest in response to pheromone // inferred from physical interaction --- --- 972.914001464844 1201.56652832031 1192.31689453125 1018.56640625 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR029C /GEN=FAR8 /DB_XREF=GI:6323671 /SEG=NC_001145:-328659,330230 /DEF=Protein involved in G1 cell cycle arrest in response to pheromone, in a pathway different from the Far1p-dependent pathway; interacts with Far3p, Far7p, Far9p, Far10p, and Far11p /NOTE=Far8p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell cycle arrest in response to pheromone [goid GO:0000751] [evidence IMP,IPI] [pmid 12588993] --- --- --- --- --- --- S0004631 // FAR8 SGDID:S0004631, Chr XIII from 330230-328659, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018740 // cdna:Genscan chromosome:SGD1:XIII:328659:330230:-1 // ensembl // 11 // --- /// YMR029C // cdna:known chromosome:SGD1:XIII:328659:330230:-1 gene:YMR029C // ensembl // 11 // --- --- No cerevisiae_gene -1.6285857759224 1.23501823029703 1.24213695128355 1.22551108601178 1.04692337114732 Max fold change below threshold 4 1.6285857759224 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770207_at YBL090W.S1 Mitochondrial ribosomal protein of the large subunit; MRP21 exhibits genetic interactions with mutations in the COX2 and COX3 mRNA 5'-untranslated leader sequences 1.62834276254856 309.035705566406 350.165283203125 MRP21 6412 // protein biosynthesis // inferred from direct assay /// 6413 // translational initiation // inferred from mutant phenotype 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // inferred from direct assay 322.246704101563 281.629486083984 336.441925048828 378.083862304688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL090W /GEN=MRP21 /DB_XREF=GI:6319381 /SEG=NC_001134:+48822,49355 /DEF=Mitochondrial ribosomal protein of the large subunit; MRP21 exhibits genetic interactions with mutations in the COX2 and COX3 mRNA 5'-untranslated leader sequences /NOTE=Mrp21p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 9528754]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 9528754]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 9528754]; go_process: translational initiation [goid GO:0006413] [evidence IMP] [pmid 9528754] --- --- --- --- --- --- S0000186 // MRP21 SGDID:S0000186, Chr II from 48822-49355, Verified ORF // sgd // 11 // --- /// GENSCAN00000021069 // cdna:Genscan chromosome:SGD1:II:48822:49355:1 // ensembl // 11 // --- /// YBL090W // cdna:known chromosome:SGD1:II:48822:49355:1 gene:YBL090W // ensembl // 11 // --- --- No cerevisiae_gene 1.22735245819357 -1.14422217851673 1.62834276254856 1.04405078707273 1.17327456725679 Max fold change below threshold 4 1.62834276254856 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780150_at YPL270W.S1 Half-type ATP-binding cassette (ABC) transporter of the inner mitochondrial membrane 1.62833073799778 1671.61883544922 1813.45812988281 MDL2 9060 // aerobic respiration // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from sequence similarity 1828.65954589844 1681.65502929688 1661.58264160156 1798.25671386719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL270W /GEN=MDL2 /DB_XREF=GI:37362699 /SEG=NC_001148:+30482,32803 /DEF=ATP-binding cassette (ABC) transporter family member /NOTE=Mdl2p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 11251115]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence ISS] [pmid 11251115]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 11251115] --- --- --- --- --- S0006191 // span:122-144,170-192,252-274 // numtm:3 S0006191 // MDL2 SGDID:S0006191, Chr XVI from 30482-32803, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020868 // cdna:GeneFinder chromosome:SGD1:XVI:30881:32803:1 // ensembl // 11 // --- /// GENSCAN00000016976 // cdna:Genscan chromosome:SGD1:XVI:31205:32803:1 // ensembl // 11 // --- /// YPL270W // cdna:known chromosome:SGD1:XVI:30482:32803:1 gene:YPL270W // ensembl // 11 // --- --- No cerevisiae_gene -1.62833073799778 -1.08741657119952 1.07943203573154 -1.10055287056672 -1.01690683638037 Max fold change below threshold 4 1.62833073799778 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778571_at YDL087C.S1 Essential protein associated with the U1 snRNP complex; splicing factor involved in recognition of 5' splice site 1.62826880096741 213.658103942871 352.303863525391 LUC7 6376 // mRNA splice site selection // inferred from mutant phenotype /// 6376 // mRNA splice site selection // inferred from genetic interaction 5685 // snRNP U1 // inferred from direct assay /// 5685 // snRNP U1 // inferred from genetic interaction /// 5685 // snRNP U1 // inferred from sequence similarity /// 5685 // snRNP U1 // inferred from mutant phenotype 3729 // mRNA binding // inferred from sequence similarity 335.801147460938 206.232009887695 221.084197998047 368.806579589844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL087C /GEN=LUC7 /DB_XREF=GI:6320116 /SEG=NC_001136:-300214,300999 /DEF=Living Under Cap-binding complex expression /NOTE=Luc7p; go_component: snRNP U1 [goid GO:0005685] [evidence IGI,IMP,ISS] [pmid 10500099]; go_component: snRNP U1 [goid GO:0005685] [evidence IDA] [pmid 11804584]; go_function: mRNA binding [goid GO:0003729] [evidence ISS] [pmid 10500099]; go_process: mRNA splice site selection [goid GO:0006376] [evidence IGI,IMP] [pmid 10500099] --- --- --- --- --- --- S0002245 // LUC7 SGDID:S0002245, Chr IV from 300999-300214, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025036 // cdna:Genscan chromosome:SGD1:IV:300214:300999:-1 // ensembl // 11 // --- /// YDL087C // cdna:known chromosome:SGD1:IV:300214:300999:-1 gene:YDL087C // ensembl // 11 // --- --- No cerevisiae_gene 1.58724107859186 -1.62826880096741 1.55726870244936 -1.51888353171177 1.09828862223512 Max fold change below threshold 4 1.62826880096741 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772243_at YFL005W.S1 Secretory vesicle-associated Rab GTPase essential for exocytosis; associates with the exocyst component Sec15p and may regulate polarized delivery of transport vesicles to the exocyst at the plasma membrane 1.62778188687737 2015.66009521484 1376.58221435547 SEC4 910 // cytokinesis // inferred from mutant phenotype /// 6887 // exocytosis // traceable author statement /// 6893 // Golgi to plasma membrane transport // traceable author statement /// 6906 // vesicle fusion // traceable author statement /// 7121 // bipolar bud site selection // inferred from mutant phenotype /// 7264 // small GTPase mediated signal transduction // traceable author statement 131 // incipient bud site // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 30133 // transport vesicle // traceable author statement /// 30478 // actin cap // inferred from direct assay 3924 // GTPase activity // traceable author statement 1384.36083984375 1777.88269042969 2253.4375 1368.80358886719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL005W /GEN=SEC4 /DB_XREF=GI:14318517 /SEG=NC_001138:+130329,130976 /DEF=Secretory vesicle associated Rab GTPase that binds to Sec15p and is essential for exocytosis /NOTE=Sec4p; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IDA] [pmid 10652251]; go_component: transport vesicle [goid GO:0030133] [evidence TAS] [pmid 12665530]; go_function: GTPase activity [goid GO:0003924] [evidence TAS] [pmid 10652251]; go_process: Golgi to plasma membrane transport [goid GO:0006893] [evidence TAS] [pmid 10652251]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251]; go_process: exocytosis [goid GO:0006887] [evidence TAS] [pmid 12665530]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence TAS] [pmid 10652251]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 10652251] --- --- --- --- --- --- S0001889 // SEC4 SGDID:S0001889, Chr VI from 130329-130976, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018524 // cdna:GeneFinder chromosome:SGD1:VI:130329:130976:1 // ensembl // 11 // --- /// GENSCAN00000023237 // cdna:Genscan chromosome:SGD1:VI:130329:130976:1 // ensembl // 11 // --- /// YFL005W // cdna:known chromosome:SGD1:VI:130329:130976:1 gene:YFL005W // ensembl // 11 // --- --- No cerevisiae_gene -1.08685394311554 1.28426248363855 1.15119140961868 1.62778188687737 -1.01136558312901 Max fold change below threshold 4 1.62778188687737 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772263_at YGR216C.S1 Membrane protein involved in the synthesis of N-acetylglucosaminyl phosphatidylinositol (GlcNAc-PI), the first intermediate in the synthesis of glycosylphosphatidylinositol (GPI) anchors; human and mouse GPI1p are functional homologs 1.62737964016422 441.096618652344 738.612731933594 GPI1 6506 // GPI anchor biosynthesis // inferred from direct assay /// 6506 // GPI anchor biosynthesis // inferred from mutant phenotype 506 // glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex // traceable author statement /// 506 // glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex // inferred from sequence similarity /// 16020 // membrane // inferred from sequence similarity /// 16020 // membrane // traceable author statement 8194 // UDP-glycosyltransferase activity // inferred from curator 694.405395507813 455.49169921875 426.701538085938 782.820068359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR216C /GEN=GPI1 /DB_XREF=GI:6321655 /SEG=NC_001139:-922636,924465 /DEF=Membrane protein involved in the synthesis of N-acetylglucosaminyl phosphatidylinositol (GlcNAc-PI), the first intermediate in the synthesis of glycosylphosphatidylinositol (GPI) anchors; human and mouse GPI1p are functional homologs /NOTE=Gpi1p; go_component: membrane [goid GO:0016020] [evidence ISS,TAS] [pmid 8910381]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: GPI anchor biosynthesis [goid GO:0006506] [evidence IDA,IMP] [pmid 8910381] --- --- --- --- --- S0003448 // span:187-209,276-298,373-395,415-432,452-474,484-506 // numtm:6 S0003448 // GPI1 SGDID:S0003448, Chr VII from 924467-922638, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021465 // cdna:GeneFinder chromosome:SGD1:VII:922638:924467:-1 // ensembl // 11 // --- /// YGR216C // cdna:known chromosome:SGD1:VII:922638:924467:-1 gene:YGR216C // ensembl // 11 // --- --- No cerevisiae_gene -1.30260003920232 -1.52451822217363 1.08987937036538 -1.62737964016422 1.12732428841067 Max fold change below threshold 4 1.62737964016422 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770898_at YAL010C.S1 Subunit of the mitochondrial sorting and assembly machinery (SAM complex); has a role in assembly of the TOM complex, which mediates protein import through the outer membrane; required for normal mitochondrial morphology and inheritance 1.62713627996226 508.094421386719 579.385009765625 MDM10 1 // mitochondrion inheritance // traceable author statement /// 2 // mitochondrial genome maintenance // traceable author statement /// 6461 // protein complex assembly // inferred from mutant phenotype /// 7005 // mitochondrion organization and biogenesis // traceable author statement 1401 // mitochondrial sorting and assembly machinery complex // inferred from physical interaction /// 5741 // mitochondrial outer membrane // traceable author statement --- 534.589050292969 452.622314453125 563.566528320313 624.180969238281 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL010C /GEN=MDM10 /DB_XREF=GI:6319309 /SEG=NC_001133:-134188,135669 /DEF=Mitochondrial outer membrane protein involved in mitochondrial morphology and inheritance /NOTE=Mdm10p; go_component: mitochondrial outer membrane [goid GO:0005741] [evidence TAS] [pmid 9891785]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitochondrial genome maintenance [goid GO:0000002] [evidence TAS] [pmid 9891785]; go_process: mitochondrion inheritance [goid GO:0000001] [evidence TAS] [pmid 9891785]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence TAS] [pmid 9891785] --- --- --- --- --- --- S0000008 // MDM10 SGDID:S0000008, Chr I from 135667-134186, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020372 // cdna:Genscan chromosome:SGD1:I:134186:135655:-1 // ensembl // 11 // --- /// YAL010C // cdna:known chromosome:SGD1:I:134186:135667:-1 gene:YAL010C // ensembl // 11 // --- --- No cerevisiae_gene -1.62713627996226 -1.18109300673538 1.46904069287853 1.05420514694692 1.16759026189596 Max fold change below threshold 4 1.62713627996226 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773001_at YIL092W.S1 Hypothetical protein 1.62698598228027 100.898784637451 155.49462890625 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 146.734619140625 96.9300384521484 104.867530822754 164.254638671875 0.00122069998178631 0.014160200022161 0.0107421996071935 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL092W /GEN=RSM25 /DB_XREF=GI:6322099 /SEG=NC_001141:+189063,190964 /DEF=Hypothetical ORF /NOTE=Yil092wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001354 // YIL092W SGDID:S0001354, Chr IX from 189063-190964, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016408 // cdna:Genscan chromosome:SGD1:IX:189087:190964:1 // ensembl // 11 // --- /// GENEFINDER00000019001 // cdna:GeneFinder chromosome:SGD1:IX:189087:190964:1 // ensembl // 11 // --- /// YIL092W // cdna:known chromosome:SGD1:IX:189063:190964:1 gene:YIL092W // ensembl // 11 // --- --- No cerevisiae_gene -1.31963781181425 -1.51381987961414 1.62698598228027 -1.39923785741303 1.11939935942764 Max fold change below threshold 4 1.62698598228027 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1773720_at YEL056W.S1 Subunit of the Hat1p-Hat2p histone acetyltransferase complex; required for high affinity binding of the complex to free histone H4, thereby enhancing Hat1p activity; similar to human RbAp46 and 48; has a role in telomeric silencing 1.62645143055709 595.986999511719 798.260314941406 HAT2 6333 // chromatin assembly or disassembly // inferred from direct assay /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype 123 // histone acetyltransferase complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4406 // H3/H4 histone acetyltransferase activity // inferred from direct assay 765.332458496094 470.553527832031 721.420471191406 831.188171386719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL056W /GEN=HAT2 /DB_XREF=GI:6320779 /SEG=NC_001137:+47168,48373 /DEF=Subunit of the Hat1p-Hat2p histone acetyltransferase complex; required for high affinity binding of the complex to free histone H4, thereby enhancing Hat1p activity; similar to human RbAp46 and 48; has a role in telomeric silencing /NOTE=Hat2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 8858151]; go_component: histone acetyltransferase complex [goid GO:0000123] [evidence IPI] [pmid 14761951]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9575221]; go_function: H3/H4 histone acetyltransferase activity [goid GO:0004406] [evidence IDA] [pmid 8858151]; go_process: chromatin assembly/disassembly [goid GO:0006333] [evidence IDA] [pmid 8858151]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 10982821] --- --- --- --- --- --- S0000782 // HAT2 SGDID:S0000782, Chr V from 47168-48373, Verified ORF // sgd // 11 // --- /// GENSCAN00000016757 // cdna:Genscan chromosome:SGD1:V:47168:48373:1 // ensembl // 11 // --- /// GENEFINDER00000019758 // cdna:GeneFinder chromosome:SGD1:V:47168:48373:1 // ensembl // 11 // --- /// YEL056W // cdna:known chromosome:SGD1:V:47168:48373:1 gene:YEL056W // ensembl // 11 // --- --- No cerevisiae_gene 1.09838859825825 -1.62645143055709 1.09165444034858 -1.06086878465227 1.08604850370522 Max fold change below threshold 4 1.62645143055709 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773728_at YFR014C.S1 Calmodulin-dependent protein kinase; may play a role in stress response, many CA++/calmodulan dependent phosphorylation substrates demonstrated in vitro, amino acid sequence similar to Cmk2p and mammalian Cam Kinase II 1.6260427816338 676.715942382813 739.384063720703 CMK1 6468 // protein amino acid phosphorylation // inferred from direct assay /// 7165 // signal transduction // inferred from mutant phenotype 5737 // cytoplasm // inferred from physical interaction 4684 // calmodulin-dependent protein kinase I activity // inferred from direct assay 719.515991210938 686.453796386719 666.978088378906 759.252136230469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR014C /GEN=CMK1 /DB_XREF=GI:14318536 /SEG=NC_001138:-172529,173869 /DEF=Calmodulin-dependent protein kinase /NOTE=Cmk1p; go_component: cytoplasm [goid GO:0005737] [evidence IPI] [pmid 9756868]; go_function: calmodulin-dependent protein kinase I activity [goid GO:0004684] [evidence IDA] [pmid 2061341]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 2061341]; go_process: signal transduction [goid GO:0007165] [evidence IMP] [pmid 11743609] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 8.0E-65 /// hanks // 2.1.11 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; CMKI // 1.0E-141 --- --- S0001910 // CMK1 SGDID:S0001910, Chr VI from 173869-172529, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018521 // cdna:GeneFinder chromosome:SGD1:VI:172529:173869:-1 // ensembl // 11 // --- /// GENSCAN00000023255 // cdna:Genscan chromosome:SGD1:VI:172529:173803:-1 // ensembl // 11 // --- /// YFR014C // cdna:known chromosome:SGD1:VI:172529:173869:-1 gene:YFR014C // ensembl // 11 // --- --- No cerevisiae_gene -1.6260427816338 -1.04816375843247 1.25317023722171 -1.07877005818846 1.05522621526821 Max fold change below threshold 4 1.6260427816338 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777024_at YBL059W.S1 Hypothetical protein 1.62566140627091 211.021705627441 160.253913879395 --- --- 5739 // mitochondrion // inferred from direct assay --- 145.065551757813 186.215942382813 235.82746887207 175.442276000977 0.00122069998178631 0.000732421991415322 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL059W /GEN=SKT5 /DB_XREF=GI:6319412 /SEG=NC_001134:+110558,111208 /DEF=Hypothetical ORF /NOTE=Ybl059wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000155 // span:71-88,123-145 // numtm:2 S0000155 // YBL059W SGDID:S0000155, Chr II from 110596-110881,110951-111246, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YBL059W // cdna:known chromosome:SGD1:II:110596:111246:1 gene:YBL059W // ensembl // 11 // --- --- No cerevisiae_gene 1.15948032484641 1.28366755667604 1.4141751733667 1.62566140627091 1.2093999841801 Max fold change below threshold 4 1.62566140627091 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772372_at YNL016W.S1 Poly(A)+ RNA-binding protein, abundant mRNP-component protein hypothesized to bind a pool of non-translatable mRNAs; not reported to associate with polyribosomes 1.62554040810209 1644.43713378906 1770.19006347656 PUB1 184 // mRNA catabolism, nonsense-mediated decay // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 30530 // heterogeneous nuclear ribonucleoprotein complex // inferred from direct assay 3676 // nucleic acid binding // traceable author statement 1806.43395996094 1641.30444335938 1647.56982421875 1733.94616699219 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL016W /GEN=PUB1 /DB_XREF=GI:6324312 /SEG=NC_001146:+602905,604266 /DEF=abundant mRNP-component protein hypothesized to bind a pool of non-translatable mRNAs. not reported to associate with polyribosomes. /NOTE=Pub1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 8413212]; go_component: heterogeneous nuclear ribonucleoprotein complex [goid GO:0030530] [evidence IDA] [pmid 8413212]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8413212]; go_function: nucleic acid binding [goid GO:0003676] [evidence TAS] [pmid 8413212]; go_process: mRNA catabolism, nonsense-mediated [goid GO:0000184] [evidence IDA] [pmid 10892745] --- --- --- --- --- --- S0004961 // PUB1 SGDID:S0004961, Chr XIV from 602906-604267, Verified ORF // sgd // 11 // --- /// GENSCAN00000020024 // cdna:Genscan chromosome:SGD1:XIV:602906:604267:1 // ensembl // 11 // --- /// GENEFINDER00000020511 // cdna:GeneFinder chromosome:SGD1:XIV:602906:604458:1 // ensembl // 11 // --- /// YNL016W // cdna:known chromosome:SGD1:XIV:602906:604267:1 gene:YNL016W // ensembl // 11 // --- --- No cerevisiae_gene 1.62554040810209 -1.10060870624561 -1.15844666468925 -1.09642330989979 -1.04180510003635 Max fold change below threshold 4 1.62554040810209 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770080_at YDR079W.S1 Chaperone that specifically facilitates the assembly of cytochrome c oxidase, located in the mitochondrial inner membrane 1.62532071427964 1072.8161315918 1057.71984863281 PET100 8535 // cytochrome c oxidase complex assembly // inferred from direct assay /// 9060 // aerobic respiration // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay 51082 // unfolded protein binding // inferred from direct assay 991.934204101563 1225.09484863281 920.537414550781 1123.50549316406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR079W /GEN=PET100 /DB_XREF=GI:6320284 /SEG=NC_001136:+603059,603394 /DEF=Chaperone that specifically facilitates the assembly of cytochrome c oxidase, located in the mitochondrial inner membrane /NOTE=Pet100p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 11498004]; go_function: chaperone activity [goid GO:0003754] [evidence IDA] [pmid 11498004]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 8702496]; go_process: cytochrome c oxidase biogenesis [goid GO:0008535] [evidence IDA] [pmid 11498004] --- --- --- --- --- --- S0002486 // PET100 SGDID:S0002486, Chr IV from 603060-603395, Verified ORF // sgd // 11 // --- /// YDR079W // cdna:known chromosome:SGD1:IV:603060:603395:1 gene:YDR079W // ensembl // 11 // --- --- No cerevisiae_gene -1.62532071427964 1.23505656279131 1.23850970812554 -1.07755989970883 1.13264114546959 Max fold change below threshold 4 1.62532071427964 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777524_at YLR447C.S1 Subunit D of the five-subunit V0 integral membrane domain of vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found in the endomembrane system; stabilizes VO subunits; required for V1 domain assembly on the vacuolar membrane 1.62500314283414 1128.77157592773 1049.68792724609 VMA6 7034 // vacuolar transport // inferred from mutant phenotype /// 7034 // vacuolar transport // inferred from direct assay /// 7035 // vacuolar acidification // traceable author statement 220 // hydrogen-transporting ATPase V0 domain // traceable author statement /// 5774 // vacuolar membrane // inferred from direct assay 46961 // hydrogen-transporting ATPase activity, rotational mechanism // inferred from direct assay /// 46961 // hydrogen-transporting ATPase activity, rotational mechanism // inferred from mutant phenotype 1058.41284179688 951.683410644531 1305.85974121094 1040.96301269531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR447C /GEN=VMA6 /DB_XREF=GI:6323480 /SEG=NC_001144:-1026852,1027889 /DEF=vacuolar ATPase V0 domain subunit d (36 kDa) /NOTE=Vma6p; go_component: hydrogen-transporting ATPase V0 domain [goid GO:0000220] [evidence TAS] [pmid 9442887]; go_component: vacuolar membrane [goid GO:0005774] [evidence IDA] [pmid 8509410]; go_function: hydrogen-transporting ATPase activity, rotational mechanism [goid GO:0046961] [evidence IDA,IMP] [pmid 8509410]; go_process: vacuolar acidification [goid GO:0007035] [evidence TAS] [pmid 9442887]; go_process: vacuolar transport [goid GO:0007034] [evidence IDA,IMP] [pmid 8509410] --- --- --- --- --- --- S0004439 // VMA6 SGDID:S0004439, Chr XII from 1027889-1026852, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018160 // cdna:Genscan chromosome:SGD1:XII:1026852:1027889:-1 // ensembl // 11 // --- /// GENEFINDER00000024732 // cdna:GeneFinder chromosome:SGD1:XII:1026852:1027889:-1 // ensembl // 11 // --- /// YLR447C // cdna:known chromosome:SGD1:XII:1026852:1027889:-1 gene:YLR447C // ensembl // 11 // --- --- No cerevisiae_gene 1.62500314283414 -1.11214804204695 1.09660656952676 1.2337905301621 -1.01676315958276 Max fold change below threshold 4 1.62500314283414 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774028_at YLR362W.S1 Signal transducing MEK kinase involved in pheromone response and pseudohyphal/invasive growth pathways, where it phosphorylates Ste7p, and the high osmolarity response pathway, via phosphorylation of Pbs2p; regulated by Ste20p and Ste50p 1.62481455144311 945.276733398438 1041.01281738281 STE11 750 // signal transduction during conjugation with cellular fusion // traceable author statement /// 1403 // invasive growth (sensu Saccharomyces) // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // traceable author statement /// 7124 // pseudohyphal growth // traceable author statement 5737 // cytoplasm // inferred from direct assay 4709 // MAP kinase kinase kinase activity // traceable author statement 950.00439453125 859.593139648438 1030.96032714844 1132.02124023438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR362W /GEN=STE11 /DB_XREF=GI:6323394 /SEG=NC_001144:+849865,852018 /DEF=involved in the mating signalling pathway /NOTE=Ste11p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9755161]; go_function: MAP kinase kinase kinase activity [goid GO:0004709] [evidence TAS] [pmid 8159759]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 8159759]; go_process: pseudohyphal growth [goid GO:0007124] [evidence TAS] [pmid 8001818]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence TAS] [pmid 8001818] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-59 /// hanks // 2.2.11 // CaMK Group; CaMK II KIN1/SNF1/Nim1; YKL453 // 4.0E-65 --- --- S0004354 // STE11 SGDID:S0004354, Chr XII from 849865-852018, Verified ORF // sgd // 11 // --- /// GENSCAN00000018095 // cdna:Genscan chromosome:SGD1:XII:849802:852018:1 // ensembl // 11 // --- /// GENEFINDER00000024561 // cdna:GeneFinder chromosome:SGD1:XII:850888:852018:1 // ensembl // 11 // --- /// YLR362W // cdna:known chromosome:SGD1:XII:849865:852018:1 gene:YLR362W // ensembl // 11 // --- --- No cerevisiae_gene -1.62481455144311 -1.10517912569636 1.21757763250478 1.08521637698016 1.19159579339939 Max fold change below threshold 4 1.62481455144311 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779172_at YLR006C.S1 Cytoplasmic response regulator, part of a two-component signal transducer that mediates osmosensing via a phosphorelay mechanism; dephosphorylated form is degraded by the ubiquitin-proteasome system; potential Cdc28p substrate 1.624593401204 792.889617919922 1030.09118652344 SSK1 7234 // osmosensory signaling pathway via two-component system // traceable author statement /// 7234 // osmosensory signaling pathway via two-component system // inferred from direct assay /// 42542 // response to hydrogen peroxide // inferred from mutant phenotype 5737 // cytoplasm // traceable author statement 156 // two-component response regulator activity // traceable author statement /// 8047 // enzyme activator activity // traceable author statement 976.94384765625 601.3466796875 984.432556152344 1083.23852539063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR006C /GEN=SSK1 /DB_XREF=GI:6323034 /SEG=NC_001144:-161754,163892 /DEF=Cytoplasmic response regulator, part of a two-component signal transducer that mediates osmosensing via a phosphorelay mechanism; dephosphorylated form is degraded by the ubiquitin-proteasome system; potential Cdc28p substrate /NOTE=Ssk1p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 8808622]; go_function: enzyme activator activity [goid GO:0008047] [evidence TAS] [pmid 9482735]; go_function: two-component response regulator activity [goid GO:0000156] [evidence TAS] [pmid 9482735]; go_process: osmosensory signaling pathway via two-component system [goid GO:0007234] [evidence TAS] [pmid 8183345]; go_process: osmosensory signaling pathway via two-component system [goid GO:0007234] [evidence IDA] [pmid 8808622]; go_process: response to hydrogen peroxide [goid GO:0042542] [evidence IMP] [pmid 11084293] --- --- --- --- --- --- S0003996 // SSK1 SGDID:S0003996, Chr XII from 163892-161754, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017752 // cdna:Genscan chromosome:SGD1:XII:161754:163892:-1 // ensembl // 11 // --- /// GENEFINDER00000024677 // cdna:GeneFinder chromosome:SGD1:XII:161754:163892:-1 // ensembl // 11 // --- /// YLR006C // cdna:known chromosome:SGD1:XII:161754:163892:-1 gene:YLR006C // ensembl // 11 // --- --- No cerevisiae_gene -1.32275432751967 -1.624593401204 -1.29522038230662 1.00766544414406 1.10880326232606 Max fold change below threshold 4 1.624593401204 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780074_at SPBC25D12.04.S1 --- 1.62442919780227 --- --- --- --- 10.3277463912964 10.2325010299683 8.60961627960205 7.17069911956787 0.0107421996071935 0.018554700538516 0.00122069998178631 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25D12.04 /GEN=suc22 /DEF=ribonucleotide reductase --- --- --- --- --- --- SPBC25D12.04 // |suc22||ribonucleotide reductase small subunit Suc22 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.62442919780227 -1.00930812135266 -1.26537630403168 -1.19955942935168 -1.4402704979091 Max fold change below threshold 4 1.62442919780227 Max fold change below threshold PAPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1779336_at YFL022C.S1 Alpha subunit of cytoplasmic phenylalanyl-tRNA synthetase, forms a tetramer with Frs1p to form active enzyme; evolutionarily distant from mitochondrial phenylalanyl-tRNA synthetase based on protein sequence, but substrate binding is similar 1.62430888412255 919.858520507813 1307.22998046875 FRS2 6432 // phenylalanyl-tRNA aminoacylation // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5737 // cytoplasm // traceable author statement /// 9328 // phenylalanine-tRNA ligase complex // traceable author statement 4826 // phenylalanine-tRNA ligase activity // inferred from sequence similarity /// 4826 // phenylalanine-tRNA ligase activity // inferred from mutant phenotype 1265.47204589844 779.083374023438 1060.63366699219 1348.98791503906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL022C /GEN=FRS2 /DB_XREF=GI:14318497 /SEG=NC_001138:-93497,95008 /DEF=Beta (small) subunit of cytoplasmic phenylalanyl-tRNA synthetase /NOTE=Frs2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: phenylalanine-tRNA ligase complex [goid GO:0009328] [evidence TAS] [pmid 3049607]; go_function: phenylalanine-tRNA ligase activity [goid GO:0004826] [evidence IMP,ISS] [pmid 3049607]; go_process: phenylalanyl-tRNA aminoacylation [goid GO:0006432] [evidence TAS] [pmid 3049607] --- --- --- --- --- --- S0001872 // FRS2 SGDID:S0001872, Chr VI from 95008-93497, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018582 // cdna:GeneFinder chromosome:SGD1:VI:93497:95008:-1 // ensembl // 11 // --- /// GENSCAN00000023224 // cdna:Genscan chromosome:SGD1:VI:93497:95008:-1 // ensembl // 11 // --- /// YFL022C // cdna:known chromosome:SGD1:VI:93497:95008:-1 gene:YFL022C // ensembl // 11 // --- --- No cerevisiae_gene 1.24335560615109 -1.62430888412255 1.09231362547962 -1.19312830176996 1.06599582299057 Max fold change below threshold 4 1.62430888412255 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772421_at YCL035C.S1 Hydroperoxide and superoxide-radical responsive heat-stable glutathione-dependent disulfide oxidoreductase with active site cysteine pair; protects cells from oxidative damage 1.62407150250181 5945.75073242188 4346.76525878906 GRX1 6979 // response to oxidative stress // inferred from mutant phenotype /// 30503 // regulation of cell redox homeostasis // inferred from mutant phenotype /// 30503 // regulation of cell redox homeostasis // inferred from direct assay /// 30503 // regulation of cell redox homeostasis // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4364 // glutathione transferase activity // inferred from direct assay /// 4602 // glutathione peroxidase activity // inferred from direct assay /// 30508 // thiol-disulfide exchange intermediate activity // inferred from sequence similarity 4633.02001953125 6945.17919921875 4946.322265625 4060.51049804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL035C /GEN=GRX1 /DB_XREF=GI:6319814 /SEG=NC_001135:-60841,61173 /DEF=Hydroperoxide and superoxide-radical responsive heat-stable glutathione-dependent disulfide oxidoreductase with active site cysteine pair; protects cells from oxidative damage /NOTE=Grx1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: glutathione peroxidase activity [goid GO:0004602] [evidence IDA] [pmid 12684511]; go_function: glutathione transferase activity [goid GO:0004364] [evidence IDA] [pmid 12684511]; go_function: thiol-disulfide exchange intermediate activity [goid GO:0030508] [evidence ISS] [pmid 9571241]; go_process: regulation of cell redox homeostasis [goid GO:0030503] [evidence TAS] [pmid 11169096]; go_process: regulation of cell redox homeostasis [goid GO:0030503] [evidence IDA,IMP] [pmid 9571241]; go_process: response to oxidative stress [goid GO:0006979] [evidence IMP] [pmid 9571241] --- --- --- --- --- --- S0000540 // GRX1 SGDID:S0000540, Chr III from 61173-60841, reverse complement, Verified ORF // sgd // 11 // --- /// YCL035C // cdna:known chromosome:SGD1:III:60841:61173:-1 gene:YCL035C // ensembl // 11 // --- --- No cerevisiae_gene -1.62407150250181 1.49906090842263 -1.18199835352314 1.06762376263711 -1.14099446898604 Max fold change below threshold 4 1.62407150250181 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776773_at YDR011W.S1 ABC transporter protein involved in multidrug resistance and resistance to singlet oxygen species 1.6239540857428 4744.7158203125 3429.47094726563 SNQ2 304 // response to singlet oxygen // inferred from mutant phenotype /// 42493 // response to drug // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // traceable author statement 8559 // xenobiotic-transporting ATPase activity // traceable author statement 3612.45703125 5866.46435546875 3622.96728515625 3246.48486328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR011W /GEN=SNQ2 /DB_XREF=GI:6320214 /SEG=NC_001136:+465916,470421 /DEF=ABC transporter /NOTE=Snq2p; go_component: plasma membrane [goid GO:0005886] [evidence TAS] [pmid 11409174]; go_function: xenobiotic-transporting ATPase activity [goid GO:0008559] [evidence TAS] [pmid 10581358]; go_process: response to drug [goid GO:0042493] [evidence TAS] [pmid 11421285]; go_process: response to singlet oxygen [goid GO:0000304] [evidence IMP] [pmid 11409174] --- --- --- --- --- S0002418 // span:520-542,555-574,601-623,630-652,667-689,767-789,1187-1209,1214-1236,1274-1296,1303-1325,1335-1357,1455-1477 // numtm:12 S0002418 // SNQ2 SGDID:S0002418, Chr IV from 465916-470421, Verified ORF // sgd // 11 // --- /// GENSCAN00000025107 // cdna:Genscan chromosome:SGD1:IV:465916:470421:1 // ensembl // 11 // --- /// GENEFINDER00000023625 // cdna:GeneFinder chromosome:SGD1:IV:466066:470421:1 // ensembl // 11 // --- /// YDR011W // cdna:known chromosome:SGD1:IV:465916:470421:1 gene:YDR011W // ensembl // 11 // --- --- No cerevisiae_gene -1.51034475155897 1.6239540857428 1.1742293377192 1.00290944745234 -1.11272874613032 Max fold change below threshold 4 1.6239540857428 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769793_at YFR036W.S1 Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition 1.62389380982628 227.972160339355 161.757339477539 CDC26 22 // mitotic spindle elongation // traceable author statement /// 70 // mitotic sister chromatid segregation // traceable author statement /// 7091 // mitotic metaphase/anaphase transition // traceable author statement /// 8054 // cyclin catabolism // traceable author statement /// 16567 // protein ubiquitination // inferred from physical interaction /// 31145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from direct assay /// 31145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from physical interaction 5680 // anaphase-promoting complex // traceable author statement 4842 // ubiquitin-protein ligase activity // traceable author statement /// 5515 // protein binding // traceable author statement 164.436569213867 220.164855957031 235.77946472168 159.078109741211 0.000244141003349796 0.00292969006113708 0.00292969006113708 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR036W /GEN=CDC26 /DB_XREF=GI:14318561 /SEG=NC_001138:+226950,227324 /DEF=Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition /NOTE=Cdc26p; go_component: anaphase-promoting complex [goid GO:0005680] [evidence TAS] [pmid 10465783]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 10465783]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 10465783]; go_process: cyclin catabolism [goid GO:0008054] [evidence TAS] [pmid 10465783]; go_process: mitotic metaphase/anaphase transition [goid GO:0007091] [evidence TAS] [pmid 10465783]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence TAS] [pmid 10465783]; go_process: mitotic spindle elongation [goid GO:0000022] [evidence TAS] [pmid 10465783]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10465783] --- --- --- --- --- --- S0001932 // CDC26 SGDID:S0001932, Chr VI from 226950-227324, Verified ORF // sgd // 11 // --- /// YFR036W // cdna:known chromosome:SGD1:VI:226950:227324:1 gene:YFR036W // ensembl // 11 // --- GENEFINDER00000018553 // ensembl // 2 // Negative Strand Matching Probes /// GENSCAN00000023275 // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene 1.62389380982628 1.33890446030094 1.14081008563529 1.43386270979069 -1.03368445527404 Max fold change below threshold 4 1.62389380982628 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775901_at YDL212W.S1 Endoplasmic reticulum packaging chaperone, required for incorporation of amino acid permeases into COPII coated vesicles for transport to the cell surface 1.62387848409624 1667.376953125 2428.07482910156 SHR3 6457 // protein folding // inferred from mutant phenotype /// 6865 // amino acid transport // inferred from mutant phenotype /// 6888 // ER to Golgi transport // inferred from genetic interaction /// 6888 // ER to Golgi transport // inferred from physical interaction 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay /// 30176 // integral to endoplasmic reticulum membrane // inferred from sequence similarity 51082 // unfolded protein binding // inferred from mutant phenotype /// 51082 // unfolded protein binding // inferred from physical interaction 2366.98486328125 1457.61206054688 1877.14184570313 2489.16479492188 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL212W /GEN=SHR3 /DB_XREF=GI:6319989 /SEG=NC_001136:+78427,79059 /DEF=Endoplasmic reticulum packaging chaperone, required for incorporation of amino acid permeases into COPII coated vesicles for transport to the cell surface /NOTE=Shr3p; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA,ISS] [pmid 1423607]; go_function: chaperone activity [goid GO:0003754] [evidence IMP,IPI] [pmid 10564255]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IGI,IPI] [pmid 10564255]; go_process: amino acid transport [goid GO:0006865] [evidence IMP] [pmid 1423607] --- --- --- --- --- S0002371 // span:7-29,62-84,97-116,136-158 // numtm:4 S0002371 // SHR3 SGDID:S0002371, Chr IV from 78427-79059, Verified ORF // sgd // 11 // --- /// GENSCAN00000024945 // cdna:Genscan chromosome:SGD1:IV:78466:79059:1 // ensembl // 11 // --- /// GENEFINDER00000023589 // cdna:GeneFinder chromosome:SGD1:IV:78493:79059:1 // ensembl // 9 // --- /// YDL212W // cdna:known chromosome:SGD1:IV:78427:79059:1 gene:YDL212W // ensembl // 11 // --- --- No cerevisiae_gene 1.12076301911158 -1.62387848409624 1.00691705251171 -1.26095151983288 1.0516183831743 Max fold change below threshold 4 1.62387848409624 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775818_at SPAC227.12.S1 --- 1.62367358555556 --- --- --- --- 4.60002899169922 2.83309960365295 6.25722932815552 6.57476234436035 0.303710997104645 0.219482004642487 0.0561522990465164 0.0461426004767418 A A M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC227.12 /DEF=WD repeat protein --- --- --- --- --- --- SPAC227.12 // |||U4/U6 x U5 tri-snRNP complex subunit|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.39396411181381 -1.62367358555556 -1.36702740875104 1.36025867216201 1.42928715367328 Max fold change below threshold 4 1.62367358555556 Max fold change below threshold AAAAMP No 4 0 AAMP 2 1 1 No No x = 1
1775844_at YLR195C.S1 N-myristoyl transferase, catalyzes the cotranslational, covalent attachment of myristic acid to the N-terminal glycine residue of several proteins involved in cellular growth and signal transduction 1.62363274917048 612.704803466797 962.236968994141 NMT1 18008 // N-terminal peptidyl-glycine N-myristoylation // traceable author statement 5829 // cytosol // inferred from direct assay 4379 // glycylpeptide N-tetradecanoyltransferase activity // inferred from mutant phenotype /// 4379 // glycylpeptide N-tetradecanoyltransferase activity // traceable author statement 956.612426757813 589.180297851563 636.229309082031 967.861511230469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR195C /GEN=NMT1 /DB_XREF=GI:6323224 /SEG=NC_001144:-541939,543306 /DEF=N-myristoyl transferase /NOTE=Nmt1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 1544917]; go_function: glycylpeptide N-tetradecanoyltransferase activity [goid GO:0004379] [evidence IMP,TAS] [pmid 8955162]; go_process: N-terminal peptidyl-glycine N-myristoylation [goid GO:0018008] [evidence TAS] [pmid 10570244] --- --- --- --- --- --- S0004185 // NMT1 SGDID:S0004185, Chr XII from 543306-541939, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017972 // cdna:Genscan chromosome:SGD1:XII:541939:543306:-1 // ensembl // 10 // --- /// YLR195C // cdna:known chromosome:SGD1:XII:541939:543306:-1 gene:YLR195C // ensembl // 10 // --- --- No cerevisiae_gene 1.26792082096132 -1.62363274917048 -1.1116851027351 -1.50356548040523 1.01175929159815 Max fold change below threshold 4 1.62363274917048 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779308_at SPAC57A7.12.S1 --- 1.62341826224246 --- --- --- --- 11.0995225906372 10.6889352798462 6.83713054656982 8.88658428192139 0.219482004642487 0.432372987270355 0.171387001872063 0.219482004642487 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC57A7.12 /DEF=heat shock protein 70 family --- --- --- --- --- --- D89262 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1747. // gb // 11 // --- /// SPAC57A7.12 // |||heat shock protein 70 family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.1744316135841 -1.03841236755967 -1.27540415894197 -1.62341826224246 -1.2490201227504 Max fold change below threshold 4 1.62341826224246 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776019_at YCR024C.S1 Mitochondrial asparaginyl-tRNA synthetase 1.62311255817834 367.498458862305 609.862091064453 SLM5 6412 // protein biosynthesis // inferred from direct assay 5739 // mitochondrion // inferred from sequence similarity /// 5739 // mitochondrion // inferred from direct assay 4816 // asparagine-tRNA ligase activity // inferred from direct assay /// 4816 // asparagine-tRNA ligase activity // inferred from sequence similarity 584.257019042969 375.036041259766 359.960876464844 635.467163085938 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR024C /GEN=HSP30 /DB_XREF=GI:6319872 /SEG=NC_001135:-160739,162217 /DEF=Hypothetical ORF /NOTE=Ycr024cp; go_component: mitochondrion [goid GO:0005739] [evidence ISS] [pmid 9030748]; go_function: asparagine-tRNA ligase activity [goid GO:0004816] [evidence IDA,ISS] [pmid 9030748]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 9030748] --- --- --- --- --- --- S0000618 // YCR024C SGDID:S0000618, Chr III from 162217-160739, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022476 // cdna:Genscan chromosome:SGD1:III:160739:162217:-1 // ensembl // 11 // --- /// GENEFINDER00000023359 // cdna:GeneFinder chromosome:SGD1:III:160739:161443:-1 // ensembl // 11 // --- /// YCR024C // cdna:known chromosome:SGD1:III:160739:162217:-1 gene:YCR024C // ensembl // 11 // --- --- No cerevisiae_gene -1.23581241148532 -1.55786899061866 -1.0188242328698 -1.62311255817834 1.08765002793951 Max fold change below threshold 4 1.62311255817834 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772933_at YOR147W.S1 Mitochondrial inner membrane protein with similarity to Mdm31p, required for normal mitochondrial morphology and inheritance; interacts genetically with MMM1, MDM10, MDM12, and MDM34 1.62263630067956 1158.59753417969 828.870819091797 MDM32 1 // mitochondrion inheritance // inferred from mutant phenotype /// 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5743 // mitochondrial inner membrane // inferred from direct assay --- 774.259338378906 1256.34130859375 1060.85375976563 883.482299804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR147W /GEN=MDM32 /DB_XREF=GI:6324721 /SEG=NC_001147:+606514,608475 /DEF=Mitochondrial Distribution and Morphology /NOTE=Mdm32p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence IMP] [pmid 11907266] --- --- --- --- --- S0005673 // span:167-189 // numtm:1 S0005673 // MDM32 SGDID:S0005673, Chr XV from 606514-608475, Verified ORF // sgd // 11 // --- /// GENSCAN00000017572 // cdna:Genscan chromosome:SGD1:XV:607702:608475:1 // ensembl // 11 // --- /// YOR147W // cdna:known chromosome:SGD1:XV:606514:608475:1 gene:YOR147W // ensembl // 11 // --- --- No cerevisiae_gene 1.35420656633399 1.62263630067956 1.22522028163729 1.37015300582202 1.14106767075547 Max fold change below threshold 4 1.62263630067956 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772057_s_at YDL248W.S1 Protein of unknown function, member of a family of conserved, often subtelomerically-encoded proteins /// Hypothetical protein /// Protein of unknown function, member of a family of conserved, often subtelomerically-encoded proteins 1.62244622343643 2139.08325195313 1418.89117431641 COS5 /// COS7 --- 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4872 // receptor activity // inferred from mutant phenotype 1381.57897949219 2036.62890625 2241.53759765625 1456.20336914063 0.000732421991415322 0.00122069998178631 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL248W /GEN=COS7 /DB_XREF=GI:6319953 /SEG=NC_001136:+1802,2953 /DEF=Protein of unknown function, member of a family of conserved, often subtelomerically-encoded proteins /NOTE=Cos7p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: receptor activity [goid GO:0004872] [evidence IMP] [pmid 9560393]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002407 // span:46-63,73-95,228-246,256-275 // numtm:4 /// S0003922 // span:34-56,71-93,228-246,256-275 // numtm:4 S0002407 // COS7 SGDID:S0002407, Chr IV from 1802-2953, Verified ORF // sgd // 11 // --- /// S0003922 // COS5 SGDID:S0003922, Chr X from 743914-742763, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024916 // cdna:Genscan chromosome:SGD1:IV:1802:2953:1 // ensembl // 11 // --- /// GENSCAN00000024263 // cdna:Genscan chromosome:SGD1:X:742763:743914:-1 // ensembl // 11 // --- /// YDL248W // cdna:known chromosome:SGD1:IV:1802:2953:1 gene:YDL248W // ensembl // 11 // --- /// YJR161C // cdna:known chromosome:SGD1:X:742763:743914:-1 gene:YJR161C // ensembl // 11 // --- --- No cerevisiae_gene 1.20787381399103 1.47413136453378 1.04769146559497 1.62244622343643 1.05401384268011 Max fold change below threshold 4 1.62244622343643 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773922_at YPR067W.S1 Protein required for maturation of mitochondrial and cytosolic Fe/S proteins, localizes to the mitochondrial intermembrane space, overexpression of ISA2 suppresses grx5 mutations 1.62234970375349 933.455108642578 935.970306396484 ISA2 6826 // iron ion transport // inferred from genetic interaction /// 6826 // iron ion transport // inferred from sequence similarity 5758 // mitochondrial intermembrane space // inferred from direct assay --- 898.046325683594 945.537536621094 921.372680664063 973.894287109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR067W /GEN=ISA2 /DB_XREF=GI:6325324 /SEG=NC_001148:+682215,682772 /DEF=Protein required for maturation of mitochondrial and cytosolic Fe/S proteins, localizes to the mitochondrial intermembrane space, overexpression of ISA2 suppresses grx5 mutations /NOTE=Isa2p; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence IDA] [pmid 10805735]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: iron ion transport [goid GO:0006826] [evidence IGI,ISS] [pmid 10805735] --- --- --- --- --- --- S0006271 // ISA2 SGDID:S0006271, Chr XVI from 682217-682774, Verified ORF // sgd // 10 // --- /// GENEFINDER00000020844 // cdna:GeneFinder chromosome:SGD1:XVI:681210:682774:1 // ensembl // 10 // --- /// YPR067W // cdna:known chromosome:SGD1:XVI:682217:682774:1 gene:YPR067W // ensembl // 10 // --- --- No cerevisiae_gene 1.39786691093969 1.05288280746692 1.62234970375349 1.0259745564492 1.08445885168345 Max fold change below threshold 4 1.62234970375349 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773754_at SPBC21B10.02.S1 --- 1.62232425587629 --- --- --- --- 5.39797353744507 7.37470388412476 8.54655265808105 4.12440299987793 0.194580003619194 0.0952147990465164 0.0375977009534836 0.194580003619194 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21B10.02 /DEF=hypothetical protein --- --- --- --- --- --- SPBC21B10.02 // |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.62232425587629 1.36619859896818 1.13142661137166 1.58328909891734 -1.30878906295162 Max fold change below threshold 4 1.62232425587629 Max fold change below threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1773243_at SPBC902.03.S1 --- 1.62216716352915 --- --- --- --- 6.00025033950806 4.61221647262573 3.69890999794006 4.06969738006592 0.108154296875 0.219482004642487 0.466064006090164 0.366210997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC902.03 /DEF=involved in meiosis (predicted) --- --- --- --- --- --- SPBC902.03 // |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 9 // --- --- No No -1.41775221463277 -1.30094725065932 1.0644196017352 -1.62216716352915 -1.47437260787456 Max fold change below threshold 4 1.62216716352915 Max fold change below threshold APAPAA No 4 0 AAAA 4 0 0 No No x = 1
1776155_at YGR180C.S1 Ribonucleotide-diphosphate reductase (RNR), small subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits 1.62195400584674 4714.70300292969 4792.66845703125 RNR4 6260 // DNA replication // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5971 // ribonucleoside-diphosphate reductase complex // inferred from mutant phenotype /// 5971 // ribonucleoside-diphosphate reductase complex // inferred from physical interaction /// 5971 // ribonucleoside-diphosphate reductase complex // inferred from direct assay 4748 // ribonucleoside-diphosphate reductase activity // inferred from genetic interaction /// 4748 // ribonucleoside-diphosphate reductase activity // inferred from physical interaction /// 4748 // ribonucleoside-diphosphate reductase activity // inferred from expression pattern 5509.62451171875 5681.17529296875 3748.23071289063 4075.71240234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR180C /GEN=RNR4 /DB_XREF=GI:6321619 /SEG=NC_001139:-855267,856304 /DEF=Ribonucleotide-diphosphate reductase (RNR), small subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits /NOTE=Rnr4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12732713]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12732713]; go_function: ribonucleoside-diphosphate reductase activity [goid GO:0004748] [evidence IEP,IGI,IPI] [pmid 9315670]; go_process: DNA replication [goid GO:0006260] [evidence TAS] [pmid 9759483] --- --- --- --- --- --- S0003412 // RNR4 SGDID:S0003412, Chr VII from 856306-855269, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019482 // cdna:Genscan chromosome:SGD1:VII:855269:856306:-1 // ensembl // 11 // --- /// GENEFINDER00000021685 // cdna:GeneFinder chromosome:SGD1:VII:855269:856306:-1 // ensembl // 11 // --- /// YGR180C // cdna:known chromosome:SGD1:VII:855269:856306:-1 gene:YGR180C // ensembl // 11 // --- --- No cerevisiae_gene -1.23729690414552 1.03113656491202 -1.62195400584674 -1.46992672910194 -1.35181876634633 Max fold change below threshold 4 1.62195400584674 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774969_at YDR166C.S1 Essential 107kDa subunit of the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, and Exo84p), which has the essential function of mediating polarized targeting of secretory vesicles to active sites of exocytosis 1.62177902092487 330.990386962891 377.715835571289 SEC5 910 // cytokinesis // inferred from mutant phenotype /// 6893 // Golgi to plasma membrane transport // traceable author statement /// 6904 // vesicle docking during exocytosis // traceable author statement /// 6906 // vesicle fusion // traceable author statement /// 7121 // bipolar bud site selection // inferred from mutant phenotype 131 // incipient bud site // inferred from direct assay /// 145 // exocyst // traceable author statement /// 145 // exocyst // inferred from physical interaction /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 5515 // protein binding // inferred from physical interaction /// 5515 // protein binding // inferred from genetic interaction 311.899810791016 325.823394775391 336.157379150391 443.531860351563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR166C /GEN=SEC5 /DB_XREF=GI:6320370 /SEG=NC_001136:-786300,789215 /DEF=107 kDa component of the Exocyst complex; required for exocytosis. /NOTE=Sec5p; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IDA] [pmid 10652251]; go_component: exocyst [goid GO:0000145] [evidence TAS] [pmid 9700152]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi to plasma membrane transport [goid GO:0006893] [evidence TAS] [pmid 9700152]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence TAS] [pmid 9700152]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251]; go_process: vesicle docking during exocytosis [goid GO:0006904] [evidence TAS] [pmid 9700152]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 9700152] --- --- --- --- --- --- S0002573 // SEC5 SGDID:S0002573, Chr IV from 789216-786301, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025221 // cdna:Genscan chromosome:SGD1:IV:786301:789216:-1 // ensembl // 11 // --- /// YDR166C // cdna:known chromosome:SGD1:IV:786301:789216:-1 gene:YDR166C // ensembl // 11 // --- --- No cerevisiae_gene -1.62177902092487 1.0446412068961 1.56817121320802 1.07777359113446 1.42203311770761 Max fold change below threshold 4 1.62177902092487 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773110_at YMR264W.S1 Endoplasmic reticulum membrane protein that recruits the ubiquitin-conjugating enzyme Ubc7p to the ER where it functions in protein degradation; contains a CUE domain that binds ubiquitin to facilitate intramolecular monoubiquitination 1.62170528129617 911.321563720703 783.514038085938 CUE1 30433 // ER-associated protein catabolism // inferred from mutant phenotype /// 45184 // establishment of protein localization // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay 5515 // protein binding // inferred from direct assay 688.866943359375 705.503967285156 1117.13916015625 878.1611328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR264W /GEN=CUE1 /DB_XREF=GI:6323920 /SEG=NC_001145:+795804,796415 /DEF=Endoplasmic reticulum membrane protein that recruits the ubiquitin-conjugating enzyme Ubc7p to the ER where it functions in protein degradation; contains a CUE domain that binds ubiquitin to facilitate intramolecular monoubiquitination /NOTE=Cue1p; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA] [pmid 9388185]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 9388185]; go_process: ER-associated protein catabolism [goid GO:0030433] [evidence IMP] [pmid 9388185]; go_process: establishment of protein localization [goid GO:0045184] [evidence IMP] [pmid 9388185] --- --- --- --- --- --- S0004877 // CUE1 SGDID:S0004877, Chr XIII from 795804-796415, Verified ORF // sgd // 11 // --- /// GENSCAN00000018935 // cdna:Genscan chromosome:SGD1:XIII:795804:796415:1 // ensembl // 11 // --- /// GENEFINDER00000021952 // cdna:GeneFinder chromosome:SGD1:XIII:795804:796415:1 // ensembl // 11 // --- /// YMR264W // cdna:known chromosome:SGD1:XIII:795804:796415:1 gene:YMR264W // ensembl // 11 // --- --- No cerevisiae_gene 1.03691240321534 1.02415128797536 1.33690302909804 1.62170528129617 1.27479064176022 Max fold change below threshold 4 1.62170528129617 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779529_at YOR020W-A.S1 Identified by homology to Ashbya gossypii 1.62168297445711 3794.63317871094 2496.32312011719 --- --- --- --- 2608.26220703125 4229.7744140625 3359.49194335938 2384.38403320313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR020W-A /GEN=HSP10 /DB_XREF=GI:33438880 /SEG=NC_001147:+371684,371956 /DEF=Identified by homology to Ashbya gossypii /NOTE=Yor020w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028526 // span:15-34 // numtm:1 S0028526 // YOR020W-A SGDID:S0028526, Chr XV from 371684-371956, Uncharacterized ORF // sgd // 11 // --- /// YOR020W-A // cdna:known chromosome:SGD1:XV:371684:371956:1 gene:YOR020W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.33426651942009 1.62168297445711 1.02604581931554 1.28801925446874 -1.09389350486774 Max fold change below threshold 4 1.62168297445711 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777633_at YGR048W.S1 Protein that interacts with Cdc48p and Npl4p, involved in recognition of polyubiquitinated proteins and their presentation to the 26S proteasome for degradation; involved in transporting proteins from the ER to the cytosol 1.62168170314849 905.826385498047 602.12646484375 UFD1 6397 // mRNA processing // traceable author statement /// 6511 // ubiquitin-dependent protein catabolism // traceable author statement /// 15031 // protein transport // inferred from direct assay 5783 // endoplasmic reticulum // inferred from direct assay 5515 // protein binding // traceable author statement 559.937805175781 903.611877441406 908.040893554688 644.315124511719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR048W /GEN=UFD1 /DB_XREF=GI:6321485 /SEG=NC_001139:+589828,590913 /DEF=Protein that interacts with Cdc48p and Npl4p, involved in recognition of polyubiquitinated proteins and their presentation to the 26S proteasome for degradation; involved in transporting proteins from the ER to the cytosol /NOTE=Ufd1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11740563]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 12015140]; go_process: mRNA processing [goid GO:0006397] [evidence TAS] [pmid 11574150]; go_process: protein transport [goid GO:0015031] [evidence IDA] [pmid 11740563]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 12015140] --- --- --- --- --- --- S0003280 // UFD1 SGDID:S0003280, Chr VII from 589830-590915, Verified ORF // sgd // 11 // --- /// GENSCAN00000019380 // cdna:Genscan chromosome:SGD1:VII:589830:590915:1 // ensembl // 11 // --- /// GENEFINDER00000021601 // cdna:GeneFinder chromosome:SGD1:VII:589878:590915:1 // ensembl // 11 // --- /// YGR048W // cdna:known chromosome:SGD1:VII:589830:590915:1 gene:YGR048W // ensembl // 11 // --- --- No cerevisiae_gene -1.33415533828519 1.61377186731968 -1.07245056848868 1.62168170314849 1.1506905205471 Max fold change below threshold 4 1.62168170314849 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772398_at YKL060C.S1 Fructose 1,6-bisphosphate aldolase, a cytosolic enzyme required for glycolysis and gluconeogenesis; catalyzes the conversion of fructose 1,6 bisphosphate into two 3-carbon products: glyceraldehyde-3-phosphate and dihydroxyacetone phosphate 1.62146720898098 7194.6943359375 7296.40771484375 FBA1 6094 // gluconeogenesis // inferred from mutant phenotype /// 6096 // glycolysis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4332 // fructose-bisphosphate aldolase activity // inferred from direct assay /// 4332 // fructose-bisphosphate aldolase activity // inferred from mutant phenotype 8932.724609375 8880.3505859375 5509.0380859375 5660.0908203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL060C /GEN=FBA1 /DB_XREF=GI:6322790 /SEG=NC_001143:-326053,327132 /DEF=Fructose 1,6-bisphosphate adolase, required for glycolysis and gluconeogenesis /NOTE=Fba1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: fructose-bisphosphate aldolase activity [goid GO:0004332] [evidence IDA,IMP] [pmid 2647491]; go_process: gluconeogenesis [goid GO:0006094] [evidence TAS]; go_process: glycolysis [goid GO:0006096] [evidence TAS] --- --- --- --- --- --- S0001543 // FBA1 SGDID:S0001543, Chr XI from 327132-326053, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018372 // cdna:Genscan chromosome:SGD1:XI:326053:327132:-1 // ensembl // 11 // --- /// GENEFINDER00000023086 // cdna:GeneFinder chromosome:SGD1:XI:326053:327132:-1 // ensembl // 11 // --- /// YKL060C // cdna:known chromosome:SGD1:XI:326053:327132:-1 gene:YKL060C // ensembl // 11 // --- --- No cerevisiae_gene -1.49272381367663 -1.0058977427671 -1.31866866091219 -1.62146720898098 -1.57819457195244 Max fold change below threshold 4 1.62146720898098 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778290_at YGR244C.S1 Beta subunit of succinyl-CoA ligase, which is a mitochondrial enzyme of the TCA cycle that catalyzes the nucleotide-dependent conversion of succinyl-CoA to succinate 1.62079933987387 2883.41625976563 1845.02642822266 LSC2 6099 // tricarboxylic acid cycle // traceable author statement /// 6104 // succinyl-CoA metabolism // traceable author statement /// 6104 // succinyl-CoA metabolism // inferred from direct assay 5739 // mitochondrion // inferred from direct assay 4775 // succinate-CoA ligase (ADP-forming) activity // inferred from direct assay /// 4775 // succinate-CoA ligase (ADP-forming) activity // inferred from sequence similarity /// 4775 // succinate-CoA ligase (ADP-forming) activity // inferred from mutant phenotype 1924.42736816406 2836.86450195313 2929.96801757813 1765.62548828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR244C /GEN=LSC2 /DB_XREF=GI:6321683 /SEG=NC_001139:-978040,979323 /DEF=beta subunit of succinyl-CoA ligase (synthetase; ATP-forming), a mitochondrial enzyme of the TCA cycle /NOTE=Lsc2p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 9874242]; go_function: succinate-CoA ligase (ADP-forming) activity [goid GO:0004775] [evidence IDA,IMP,ISS] [pmid 9874242]; go_process: succinyl-CoA metabolism [goid GO:0006104] [evidence TAS] [pmid 9175438]; go_process: succinyl-CoA metabolism [goid GO:0006104] [evidence IDA] [pmid 9874242]; go_process: tricarboxylic acid cycle [goid GO:0006099] [evidence TAS] [pmid 9175438] --- --- --- --- --- --- S0003476 // LSC2 SGDID:S0003476, Chr VII from 979324-978041, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019527 // cdna:Genscan chromosome:SGD1:VII:978041:979324:-1 // ensembl // 11 // --- /// GENEFINDER00000021745 // cdna:GeneFinder chromosome:SGD1:VII:978041:979324:-1 // ensembl // 11 // --- /// YGR244C // cdna:known chromosome:SGD1:VII:978041:979324:-1 gene:YGR244C // ensembl // 11 // --- --- No cerevisiae_gene -1.62079933987387 1.47413435751516 -1.03324207674401 1.52251421178517 -1.08994086284821 Max fold change below threshold 4 1.62079933987387 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779866_at YLR121C.S1 Aspartic protease, attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor 1.62058633831863 523.674041748047 827.523406982422 YPS3 19538 // protein metabolism // inferred from direct assay /// 19538 // protein metabolism // inferred from sequence similarity 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from direct assay 4190 // aspartic-type endopeptidase activity // inferred from sequence similarity /// 4190 // aspartic-type endopeptidase activity // inferred from direct assay 817.101135253906 504.200927734375 543.147155761719 837.945678710938 0.00195312988944352 0.00292969006113708 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR121C /GEN=YPS3 /DB_XREF=GI:6323150 /SEG=NC_001144:-388745,390271 /DEF=Aspartic protease, attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor /NOTE=Yps3p; go_component: plasma membrane [goid GO:0005886] [evidence IDA,ISS] [pmid 10191273]; go_function: aspartic-type endopeptidase activity [goid GO:0004190] [evidence IDA,ISS] [pmid 10191273]; go_process: protein metabolism [goid GO:0019538] [evidence IDA,ISS] [pmid 10191273] --- --- --- --- --- --- S0004111 // YPS3 SGDID:S0004111, Chr XII from 390271-388745, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017914 // cdna:Genscan chromosome:SGD1:XII:388667:389971:-1 // ensembl // 11 // --- /// GENEFINDER00000024693 // cdna:GeneFinder chromosome:SGD1:XII:388667:390271:-1 // ensembl // 11 // --- /// YLR121C // cdna:known chromosome:SGD1:XII:388745:390271:-1 gene:YLR121C // ensembl // 11 // --- --- No cerevisiae_gene -1.3242844647807 -1.62058633831863 -1.07851564680841 -1.50438260899662 1.02551035919263 Max fold change below threshold 4 1.62058633831863 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775392_at YFR003C.S1 Inhibitor of the type I protein phosphatase Glc7p, which is involved in regulation of a variety of metabolic processes; overproduction causes decreased cellular content of glycogen 1.62052837611723 802.087646484375 676.031555175781 YPI1 5977 // glycogen metabolism // inferred from mutant phenotype /// 6470 // protein amino acid dephosphorylation // inferred from direct assay --- 4864 // protein phosphatase inhibitor activity // inferred from direct assay 663.917785644531 798.633178710938 805.542114257813 688.145324707031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR003C /GEN=YPI1 /DB_XREF=GI:14318525 /SEG=NC_001138:-152652,153119 /DEF=Inhibitor of the type I protein phosphatase Glc7p, which is involved in regulation of a variety of metabolic processes; overproduction causes decreased cellular content of glycogen /NOTE=Ypi1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein phosphatase inhibitor activity [goid GO:0004864] [evidence IDA] [pmid 14506263]; go_process: glycogen metabolism [goid GO:0005977] [evidence IMP] [pmid 14506263]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence IDA] [pmid 14506263] --- --- --- --- --- --- S0001899 // YPI1 SGDID:S0001899, Chr VI from 153119-152652, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018579 // cdna:GeneFinder chromosome:SGD1:VI:152652:153119:-1 // ensembl // 11 // --- /// GENSCAN00000023245 // cdna:Genscan chromosome:SGD1:VI:152652:153119:-1 // ensembl // 11 // --- /// YFR003C // cdna:known chromosome:SGD1:VI:152652:153119:-1 gene:YFR003C // ensembl // 11 // --- --- No cerevisiae_gene -1.62052837611723 1.20290975174829 1.27932171615708 1.2133160636385 1.03649177591918 Max fold change below threshold 4 1.62052837611723 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777948_at YPR016C.S1 Constituent of 66S pre-ribosomal particles, has similarity to human translation initiation factor 6 (eIF6); may be involved in the biogenesis and or stability of 60S ribosomal subunits 1.62045927005838 1679.81182861328 1732.54577636719 TIF6 30489 // processing of 27S pre-rRNA // inferred from mutant phenotype /// 42273 // ribosomal large subunit biogenesis // inferred from mutant phenotype /// 42273 // ribosomal large subunit biogenesis // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1729.38635253906 1297.39611816406 2062.2275390625 1735.70520019531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR016C /GEN=TIF6 /DB_XREF=GI:6325273 /SEG=NC_001148:-592327,593064 /DEF=similar to human translation initiation factor 6 (eIF6); however, TIF6 does not act as a true translation initiation factor.The protein may be involved in the biogenesis and or stability of the 60S ribosomal subunits /NOTE=Tif6p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11238882]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11238882]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: processing of 27S pre-rRNA [goid GO:0030489] [evidence IMP] [pmid 11238882]; go_process: ribosomal large subunit biogenesis [goid GO:0042273] [evidence IMP] [pmid 11238882] --- --- --- --- --- --- S0006220 // TIF6 SGDID:S0006220, Chr XVI from 593066-592329, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017197 // cdna:Genscan chromosome:SGD1:XVI:592329:593066:-1 // ensembl // 11 // --- /// GENEFINDER00000020969 // cdna:GeneFinder chromosome:SGD1:XVI:592329:593066:-1 // ensembl // 11 // --- /// YPR016C // cdna:known chromosome:SGD1:XVI:592329:593066:-1 gene:YPR016C // ensembl // 11 // --- --- No cerevisiae_gene 1.62045927005838 -1.33296710875496 1.02760410310258 1.19246201754441 1.00365380913697 Max fold change below threshold 4 1.62045927005838 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777479_at YER057C.S1 Member of the p14.5 protein family with similarity to Mmf1p, functionally complements Mmf1p function when targeted to mitochondria; heat shock inducible; high-dosage growth inhibitor; forms a homotrimer in vitro 1.61959048123991 1655.33654785156 2569.58325195313 HMF1 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5829 // cytosol // inferred from direct assay --- 2672.51586914063 1650.11828613281 1660.55480957031 2466.65063476563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER057C /GEN=HMF1 /DB_XREF=GI:6320899 /SEG=NC_001137:-270735,271124 /DEF=Member of the p14.5 protein family with similarity to Mmf1p, functionally complements Mmf1p function when targeted to mitochondria; heat shock inducible; high-dosage growth inhibitor; forms a homotrimer in vitro /NOTE=Hmf1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11442631]; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 11003673]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11442631]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000859 // HMF1 SGDID:S0000859, Chr V from 271124-270735, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019596 // cdna:GeneFinder chromosome:SGD1:V:270735:271124:-1 // ensembl // 11 // --- /// YER057C // cdna:known chromosome:SGD1:V:270735:271124:-1 gene:YER057C // ensembl // 11 // --- --- No cerevisiae_gene -1.55138649554487 -1.61959048123991 -1.31860088365066 -1.60941141703848 -1.08345942123845 Max fold change below threshold 4 1.61959048123991 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777855_at YGR091W.S1 Splicing factor, component of the U4/U6-U5 snRNP complex 1.61953601148437 121.44441986084 143.304862976074 PRP31 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 5739 // mitochondrion // inferred from direct assay /// 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 31202 // RNA splicing factor activity, transesterification mechanism // inferred from physical interaction 130.505996704102 97.0460205078125 145.842819213867 156.103729248047 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR091W /GEN=PRP31 /DB_XREF=GI:6321528 /SEG=NC_001139:+666343,667827 /DEF=Splicing factor, component of the U4/U6-U5 snRNP complex /NOTE=Prp31p; go_component: U4/U6 x U5 tri-snRNP complex [goid GO:0046540] [evidence TAS] [pmid 10377396]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10377396] --- --- --- --- --- --- S0003323 // PRP31 SGDID:S0003323, Chr VII from 666345-667829, Verified ORF // sgd // 11 // --- /// GENSCAN00000019410 // cdna:Genscan chromosome:SGD1:VII:666345:667829:1 // ensembl // 11 // --- /// GENEFINDER00000021689 // cdna:GeneFinder chromosome:SGD1:VII:667257:667829:1 // ensembl // 11 // --- /// YGR091W // cdna:known chromosome:SGD1:VII:666345:667829:1 gene:YGR091W // ensembl // 11 // --- --- No cerevisiae_gene -1.19605199014277 -1.34478462920172 1.61953601148437 1.11751814397111 1.19614219415514 Max fold change below threshold 4 1.61953601148437 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775517_at YOR202W.S1 Imidazoleglycerol-phosphate dehydratase, catalyzes the sixth step in histidine biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts; transcription is regulated by general amino acid control via Gcn4p 1.61942866227331 1137.98583984375 1550.40014648438 HIS3 105 // histidine biosynthesis // traceable author statement 5622 // intracellular // traceable author statement 4424 // imidazoleglycerol-phosphate dehydratase activity // traceable author statement 1514.5419921875 935.232299804688 1340.73937988281 1586.25830078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR202W /GEN=HIS3 /DB_XREF=GI:6324776 /SEG=NC_001147:+721946,722608 /DEF=Imidazoleglycerol-phosphate dehydratase, catalyzes the sixth step in histidine biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts; transcription is regulated by general amino acid control via Gcn4p /NOTE=His3p; go_component: cell [goid GO:0005623] [evidence TAS] [pmid 8852895]; go_function: imidazoleglycerol-phosphate dehydratase activity [goid GO:0004424] [evidence TAS] [pmid 8852895]; go_process: histidine biosynthesis [goid GO:0000105] [evidence TAS] [pmid 8852895] --- --- --- --- --- --- S0005728 // HIS3 SGDID:S0005728, Chr XV from 721946-722608, Verified ORF // sgd // 11 // --- /// GENSCAN00000017619 // cdna:Genscan chromosome:SGD1:XV:721946:722608:1 // ensembl // 11 // --- /// GENEFINDER00000022703 // cdna:GeneFinder chromosome:SGD1:XV:721946:722608:1 // ensembl // 11 // --- /// YOR202W // cdna:known chromosome:SGD1:XV:721946:722608:1 gene:YOR202W // ensembl // 11 // --- --- No cerevisiae_gene 1.21419082643461 -1.61942866227331 -1.2324946489304 -1.12963191423517 1.04735181260321 Max fold change below threshold 4 1.61942866227331 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779911_at YHR109W.S1 Cytochrome c lysine methyltransferase, trimethylates residue 72 of apo-cytochrome c (Cyc1p) in the cytosol; not required for normal respiratory growth 1.6193554544937 85.0007286071777 121.563014984131 CTM1 6464 // protein modification // inferred from direct assay 5829 // cytosol // inferred from direct assay 277 // [cytochrome c]-lysine N-methyltransferase activity // inferred from mutant phenotype /// 277 // [cytochrome c]-lysine N-methyltransferase activity // inferred from direct assay 116.755859375 72.1002044677734 97.901252746582 126.370170593262 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR109W /GEN=CTM1 /DB_XREF=GI:6321901 /SEG=NC_001140:+330312,332069 /DEF=Cytochrome c lysine methyltransferase, trimethylates residue 72 of apo-cytochrome c (Cyc1p) in the cytosol; not required for normal respiratory growth /NOTE=Ctm1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 10791961]; go_function: [cytochrome c]-lysine N-methyltransferase activity [goid GO:0000277] [evidence IDA,IMP] [pmid 10791961]; go_process: protein modification [goid GO:0006464] [evidence IDA] [pmid 10791961] --- --- --- --- --- --- S0001151 // CTM1 SGDID:S0001151, Chr VIII from 330312-332069, Verified ORF // sgd // 11 // --- /// GENSCAN00000016646 // cdna:Genscan chromosome:SGD1:VIII:330312:332069:1 // ensembl // 11 // --- /// GENEFINDER00000020242 // cdna:GeneFinder chromosome:SGD1:VIII:330609:332069:1 // ensembl // 11 // --- /// YHR109W // cdna:known chromosome:SGD1:VIII:330312:332069:1 gene:YHR109W // ensembl // 11 // --- --- No cerevisiae_gene -1.57256369076422 -1.6193554544937 1.32652666488232 -1.19258800167985 1.08234542805584 Max fold change below threshold 4 1.6193554544937 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769663_at YDL061C.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps29Bp and has similarity to rat S29 and E. coli S14 ribosomal proteins /// Protein component of the small (40S) ribosomal subunit; nearly identical to Rps29Ap and has similarity to rat S29 and E. coli S14 ribosomal proteins 1.61925881320085 4283.4228515625 5551.76391601563 RPS29A /// RPS29B 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 6333.85498046875 4655.26904296875 3911.57666015625 4769.6728515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL061C /GEN=RPS29B /DB_XREF=GI:6320142 /SEG=NC_001136:-340628,340798 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps29Ap and has similarity to rat S29 and E. coli S14 ribosomal proteins /NOTE=Rps29bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0002219 // RPS29B SGDID:S0002219, Chr IV from 340798-340628, reverse complement, Verified ORF // sgd // 11 // --- /// YDL061C // cdna:known chromosome:SGD1:IV:340628:340798:-1 gene:YDL061C // ensembl // 11 // --- --- No cerevisiae_gene -1.12695936121679 -1.36057764266822 -1.29686264202471 -1.61925881320085 -1.32794327359241 Max fold change below threshold 4 1.61925881320085 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769452_at YPL020C.S1 Ubl (ubiquitin-like protein)-specific protease that cleaves Smt3p protein conjugates; specifically required for cell cycle progression; associates with nucleoporins and may interact with septin rings during telophase 1.61925309417471 721.418090820313 688.910339355469 ULP1 86 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 16926 // protein desumoylation // inferred from mutant phenotype /// 16926 // protein desumoylation // inferred from direct assay 5635 // nuclear membrane // inferred from direct assay /// 5643 // nuclear pore // inferred from direct assay 8234 // cysteine-type peptidase activity // inferred from direct assay /// 8234 // cysteine-type peptidase activity // inferred from sequence similarity /// 16929 // SUMO-specific protease activity // inferred from mutant phenotype /// 16929 // SUMO-specific protease activity // inferred from direct assay 642.052185058594 794.102233886719 648.733947753906 735.768493652344 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL020C /GEN=ULP1 /DB_XREF=GI:6325237 /SEG=NC_001148:-512309,514174 /DEF=Ubl (ubiquitin-like protein)-specific protease 1; initially processes Smt3; also acts as a deconjugating enzyme for Smt3 /NOTE=Ulp1p; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 10713161]; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 12471376]; go_function: SUMO-specific protease activity [goid GO:0016929] [evidence IDA,IMP] [pmid 10094048]; go_function: cysteine-type peptidase activity [goid GO:0008234] [evidence IDA,ISS] [pmid 10094048]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence IMP] [pmid 10094048]; go_process: protein desumoylation [goid GO:0016926] [evidence IDA,IMP] [pmid 10094048] --- --- --- --- --- --- S0005941 // ULP1 SGDID:S0005941, Chr XVI from 514176-512311, reverse complement, Verified ORF // sgd // 11 // --- /// YPL020C // cdna:known chromosome:SGD1:XVI:512311:514176:-1 gene:YPL020C // ensembl // 11 // --- --- No cerevisiae_gene -1.61925309417471 1.23681883243532 1.11936869301175 1.01040688412999 1.14596369387824 Max fold change below threshold 4 1.61925309417471 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777581_at YLR285C-A.S1 Identified by fungal homology and RT-PCR 1.61912446383223 129.188018798828 198.439338684082 --- --- --- --- 195.183334350586 137.827346801758 120.548690795898 201.695343017578 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR285C-A /GEN=NNT1 /DB_XREF=GI:33438842 /SEG=NC_001144:-708170,708340 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ylr285c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028569 // YLR285C-A SGDID:S0028569, Chr XII from 708340-708170, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YLR285C-A // cdna:known chromosome:SGD1:XII:708170:708340:-1 gene:YLR285C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.14325858237039 -1.41614373982926 -1.57274640743113 -1.61912446383223 1.03336354862806 Max fold change below threshold 4 1.61912446383223 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775023_at YJR003C.S1 Hypothetical protein 1.61884617428779 245.397331237793 246.992935180664 --- --- 5739 // mitochondrion // inferred from direct assay --- 227.271789550781 280.487060546875 210.307601928711 266.714080810547 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR003C /GEN=MPP10 /DB_XREF=GI:6322462 /SEG=NC_001142:-440908,442527 /DEF=Hypothetical ORF /NOTE=Yjr003cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003763 // YJR003C SGDID:S0003763, Chr X from 442527-440908, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000024135 // cdna:Genscan chromosome:SGD1:X:440908:442527:-1 // ensembl // 10 // --- /// GENEFINDER00000024432 // cdna:GeneFinder chromosome:SGD1:X:440908:442527:-1 // ensembl // 10 // --- /// YJR003C // cdna:known chromosome:SGD1:X:440908:442527:-1 gene:YJR003C // ensembl // 10 // --- --- No cerevisiae_gene 1.46278300074041 1.23414815847263 -1.61884617428779 -1.08066369197544 1.17354679759299 Max fold change below threshold 4 1.61884617428779 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776227_at YPL053C.S1 Probable mannosylphosphate transferase involved in the synthesis of core oligosaccharides in protein glycosylation pathway; member of the KRE2/MNT1 mannosyltransferase family 1.61865149672133 2446.2509765625 1724.89971923828 KTR6 6487 // N-linked glycosylation // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5624 // membrane fraction // inferred from sequence similarity 31 // mannosylphosphate transferase activity // inferred from sequence similarity /// 31 // mannosylphosphate transferase activity // inferred from mutant phenotype 1803.88256835938 2611.17626953125 2281.32568359375 1645.91687011719 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL053C /GEN=KTR6 /DB_XREF=GI:6325204 /SEG=NC_001148:-457113,458453 /DEF=Similar to KRE2, mannosylphosphate transferase which may recognize any oligosaccharides with at least one alpha-1,2-linked mannobiose unit. Required for the transfer of mannosylphosphate to cell wall mannans. /NOTE=Ktr6p; go_component: membrane fraction [goid GO:0005624] [evidence ISS] [pmid 9218445]; go_function: mannosylphosphate transferase activity [goid GO:0000031] [evidence IMP,ISS] [pmid 9218445]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IMP] [pmid 9218445]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9090056] --- --- --- --- --- S0005974 // span:12-29 // numtm:1 S0005974 // KTR6 SGDID:S0005974, Chr XVI from 458455-457115, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017149 // cdna:Genscan chromosome:SGD1:XVI:457115:458455:-1 // ensembl // 11 // --- /// GENEFINDER00000020721 // cdna:GeneFinder chromosome:SGD1:XVI:457115:458353:-1 // ensembl // 11 // --- /// YPL053C // cdna:known chromosome:SGD1:XVI:457115:458455:-1 gene:YPL053C // ensembl // 11 // --- --- No cerevisiae_gene -1.61865149672133 1.44753118375444 -1.1414792042447 1.26467527521407 -1.09597428710415 Max fold change below threshold 4 1.61865149672133 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771233_at YDL104C.S1 Putative metalloprotease, similar to O-sialoglycoprotein metallopeptidase from P. haemolytica 1.61858438121438 116.727897644043 190.851417541504 QRI7 6508 // proteolysis and peptidolysis // inferred from sequence similarity 5739 // mitochondrion // inferred from direct assay 4222 // metalloendopeptidase activity // inferred from sequence similarity 159.386047363281 99.2268524169922 134.228942871094 222.316787719727 0.000732421991415322 0.000732421991415322 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL104C /GEN=QRI7 /DB_XREF=GI:6320099 /SEG=NC_001136:-273653,274876 /DEF=similar to H.influenzae sialoglycoprotease /NOTE=Qri7p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002262 // QRI7 SGDID:S0002262, Chr IV from 274876-273653, reverse complement, Verified ORF // sgd // 11 // --- /// YDL104C // cdna:known chromosome:SGD1:IV:273653:274876:-1 gene:YDL104C // ensembl // 11 // --- --- No cerevisiae_gene 1.20339171112909 -1.60627938386552 1.61858438121438 -1.18741937434721 1.39483217883564 Max fold change below threshold 4 1.61858438121438 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771758_at YCR095C.S1 Cytoplasmic protein required for replication of Brome mosaic virus in S. cerevisiae, which is a model system for studying replication of positive-strand RNA viruses in their natural hosts 1.61818085633609 107.587566375732 141.613670349121 --- --- 5737 // cytoplasm // inferred from direct assay --- 120.420028686523 115.304756164551 99.8703765869141 162.807312011719 0.00122069998178631 0.00195312988944352 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR095C /GEN=CDC50 /DB_XREF=GI:6319938 /SEG=NC_001135:-288166,289254 /DEF=Hypothetical ORF /NOTE=Ycr095cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000691 // YCR095C SGDID:S0000691, Chr III from 289254-288166, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022526 // cdna:Genscan chromosome:SGD1:III:288166:289254:-1 // ensembl // 11 // --- /// YCR095C // cdna:known chromosome:SGD1:III:288166:289254:-1 gene:YCR095C // ensembl // 11 // --- --- No cerevisiae_gene -1.61818085633609 -1.04436306612255 1.10731784333883 -1.20576323832849 1.35199529337049 Max fold change below threshold 4 1.61818085633609 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774246_at YLR011W.S1 Putative NADPH-dependent FMN reductase with strong ferricyanide reductase activity in vitro; gene expression increases in cultures shifted to a lower temperature 1.61816487737481 345.830703735352 343.680297851563 LOT6 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8752 // FMN reductase activity // inferred from direct assay /// 8752 // FMN reductase activity // inferred from sequence similarity 323.01171875 336.99267578125 354.668731689453 364.348876953125 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR011W /GEN=LOT6 /DB_XREF=GI:6323039 /SEG=NC_001144:+169102,169677 /DEF=LOw Temperature responsive /NOTE=Lot6p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004001 // LOT6 SGDID:S0004001, Chr XII from 169102-169677, Verified ORF // sgd // 11 // --- /// GENSCAN00000017758 // cdna:Genscan chromosome:SGD1:XII:169102:169677:1 // ensembl // 11 // --- /// GENEFINDER00000024833 // cdna:GeneFinder chromosome:SGD1:XII:169102:169677:1 // ensembl // 11 // --- /// YLR011W // cdna:known chromosome:SGD1:XII:169102:169677:1 gene:YLR011W // ensembl // 11 // --- --- No cerevisiae_gene -1.51149351916034 1.04328312633781 1.61816487737481 1.09800577224244 1.12797417494044 Max fold change below threshold 4 1.61816487737481 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775250_at YER048W-A.S1 Similar to D. melanogaster protein; weaker homology to C. elegans protein with similarity to human cdk7/cyclin H assembly factor 1.61815904383585 546.57666015625 544.280792236328 --- --- 5739 // mitochondrion // inferred from direct assay --- 499.161437988281 560.558959960938 532.594360351563 589.400146484375 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER048W-A /GEN=CAJ1 /DB_XREF=GI:6320889 /SEG=NC_001137:+250717,251001 /DEF=Similar to D. melanogaster protein; weaker homology to C. elegans protein with similarity to human cdk7/cyclin H assembly factor /NOTE=Yer048w-ap; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007237 // YER048W-A SGDID:S0007237, Chr V from 250717-251001, Uncharacterized ORF // sgd // 10 // --- /// YER048W-A // cdna:known chromosome:SGD1:V:250717:251001:1 gene:YER048W-A // ensembl // 10 // --- --- No cerevisiae_gene 1.61815904383585 1.12300133243485 -1.01179042156527 1.06697817543363 1.18078060849366 Max fold change below threshold 4 1.61815904383585 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778418_at YKL017C.S1 Hexameric DNA polymerase alpha-associated DNA helicase A involved in lagging strand DNA synthesis; contains single-stranded DNA stimulated ATPase and dATPase activities; replication protein A stimulates helicase and ATPase activities 1.61807212936922 286.756011962891 281.997268676758 HCS1 6273 // lagging strand elongation // inferred from physical interaction 5658 // alpha DNA polymerase:primase complex // inferred from physical interaction 3678 // DNA helicase activity // inferred from direct assay 256.569061279297 256.131225585938 317.380798339844 307.425476074219 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL017C /GEN=HCS1 /DB_XREF=GI:6322835 /SEG=NC_001143:-404833,406884 /DEF=Hexameric DNA polymerase alpha-associated DNA helicase A involved in lagging strand DNA synthesis; contains single-stranded DNA stimulated ATPase and dATPase activities; replication protein A stimulates helicase and ATPase activities /NOTE=Hcs1p; go_component: alpha DNA polymerase:primase complex [goid GO:0005658] [evidence IPI] [pmid 8257676]; go_function: DNA helicase activity [goid GO:0003678] [evidence IDA] [pmid 9341217]; go_process: lagging strand elongation [goid GO:0006273] [evidence IPI] [pmid 8257676] --- --- --- --- --- --- S0001500 // HCS1 SGDID:S0001500, Chr XI from 406884-404833, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018405 // cdna:Genscan chromosome:SGD1:XI:404833:406884:-1 // ensembl // 11 // --- /// GENEFINDER00000023110 // cdna:GeneFinder chromosome:SGD1:XI:404833:406521:-1 // ensembl // 11 // --- /// YKL017C // cdna:known chromosome:SGD1:XI:404833:406884:-1 gene:YKL017C // ensembl // 11 // --- --- No cerevisiae_gene 1.24466463786337 -1.00170941942888 1.61807212936922 1.23701897944097 1.19821725402643 Max fold change below threshold 4 1.61807212936922 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775128_at YDR382W.S1 Ribosomal protein P2 beta, a component of the ribosomal stalk, which is involved in the interaction between translational elongation factors and the ribosome; regulates the accumulation of P1 (Rpp1Ap and Rpp1Bp) in the cytoplasm 1.61798976691933 3565.50939941406 4854.1298828125 RPP2B 6412 // protein biosynthesis // traceable author statement /// 6414 // translational elongation // inferred from sequence similarity 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 5547.79736328125 3702.19775390625 3428.82104492188 4160.46240234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR382W /GEN=RPP2B /DB_XREF=GI:6320590 /SEG=NC_001136:+1239480,1239812 /DEF=Homology to rat P2, human P2, and E.coli L12eIA /NOTE=Rpp2bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9559554]; go_process: translational elongation [goid GO:0006414] [evidence ISS] [pmid 9175862] --- --- --- --- --- --- S0002790 // RPP2B SGDID:S0002790, Chr IV from 1239482-1239814, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023759 // cdna:GeneFinder chromosome:SGD1:IV:1239482:1239814:1 // ensembl // 11 // --- /// YDR382W // cdna:known chromosome:SGD1:IV:1239482:1239814:1 gene:YDR382W // ensembl // 11 // --- --- No cerevisiae_gene -1.11319093194155 -1.49851459377816 -1.4080505039264 -1.61798976691933 -1.333456915788 Max fold change below threshold 4 1.61798976691933 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770891_at YLR165C.S1 Pseudouridine synthase, catalyzes only the formation of pseudouridine (Psi)-2819 in mitochondrial 21S rRNA; not essential for viability 1.61781697042976 276.830024719238 253.321807861328 PUS5 154 // rRNA modification // inferred from mutant phenotype /// 1522 // pseudouridine synthesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from mutant phenotype 4730 // pseudouridylate synthase activity // inferred from sequence similarity /// 4730 // pseudouridylate synthase activity // inferred from mutant phenotype 213.22705078125 255.21467590332 298.445373535156 293.416564941406 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR165C /GEN=PUS5 /DB_XREF=GI:6323194 /SEG=NC_001144:-494496,495260 /DEF=Pus5p /NOTE=go_component: mitochondrion [goid GO:0005739] [evidence IMP] [pmid 10756195]; go_function: pseudouridylate synthase activity [goid GO:0004730] [evidence IMP,ISS] [pmid 10756195]; go_process: pseudouridine synthesis [goid GO:0001522] [evidence IMP] [pmid 10756195]; go_process: rRNA modification [goid GO:0000154] [evidence IMP] [pmid 10756195] --- --- --- --- --- --- S0004155 // PUS5 SGDID:S0004155, Chr XII from 495260-494496, reverse complement, Verified ORF // sgd // 11 // --- /// YLR165C // cdna:known chromosome:SGD1:XII:494496:495260:-1 gene:YLR165C // ensembl // 11 // --- --- No cerevisiae_gene -1.04756014679285 1.19691509575464 1.61781697042976 1.39965999830543 1.37607570834163 Max fold change below threshold 4 1.61781697042976 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770035_at YGL084C.S1 Plasma membrane protein with a possible role in proton symport of glycerol; member of the MBOAT family of putative membrane-bound O-acyltransferases 1.61772745760351 893.431823730469 1374.10894775391 GUP1 15793 // glycerol transport // inferred from genetic interaction /// 15793 // glycerol transport // inferred from mutant phenotype /// 19563 // glycerol catabolism // inferred from genetic interaction /// 19563 // glycerol catabolism // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay /// 16020 // membrane // inferred from direct assay /// 16020 // membrane // inferred from sequence similarity 8374 // O-acyltransferase activity // inferred from sequence similarity 1372.33654785156 848.311340332031 938.552307128906 1375.88134765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL084C /GEN=GUP1 /DB_XREF=GI:6321354 /SEG=NC_001139:-350617,352299 /DEF=Multimembrane-spanning protein and putative glycerol transporter that is essential for proton symport of glycerol; Gup2p homolog /NOTE=Gup1p; go_component: membrane [goid GO:0016020] [evidence IDA,ISS] [pmid 10931309]; go_function: glycerol transporter activity [goid GO:0015168] [evidence IMP,ISS] [pmid 10931309]; go_process: glycerol catabolism [goid GO:0019563] [evidence IGI,IMP] [pmid 10747858]; go_process: glycerol transport [goid GO:0015793] [evidence IGI,IMP] [pmid 10931309] --- --- --- --- --- S0003052 // span:44-61,102-121,131-153,166-185,280-302,315-337,352-374,454-476,486-508,521-543 // numtm:10 S0003052 // GUP1 SGDID:S0003052, Chr VII from 352301-350619, reverse complement, Verified ORF // sgd // 10 // --- /// YGL084C // cdna:known chromosome:SGD1:VII:350619:352301:-1 gene:YGL084C // ensembl // 10 // --- --- No cerevisiae_gene -1.41742339849463 -1.61772745760351 -1.07681147482101 -1.46218440616233 1.00258303971445 Max fold change below threshold 4 1.61772745760351 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772029_at YMR075W.S1 Nuclear protein of unknown function 1.61749055329837 232.360038757324 224.907791137695 --- --- 5634 // nucleus // inferred from direct assay --- 224.592498779297 274.807586669922 189.912490844727 225.223083496094 0.00195312988944352 0.00195312988944352 0.000244141003349796 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR075W /GEN=ABF2 /DB_XREF=GI:6323720 /SEG=NC_001145:+413981,416035 /DEF=Hypothetical ORF /NOTE=Ymr075wp --- --- --- --- --- --- S0004680 // RCO1 SGDID:S0004680, Chr XIII from 413981-416035, Uncharacterized ORF // sgd // 11 // --- /// YMR075W // cdna:known chromosome:SGD1:XIII:413981:416035:1 gene:YMR075W // ensembl // 11 // --- YMR075C-A // ensembl // 8 // Negative Strand Matching Probes No cerevisiae_gene 1.61749055329837 1.22358310345872 -1.38504943219528 -1.18261046327345 1.00280768378385 Max fold change below threshold 4 1.61749055329837 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777315_at YCL012C.S1 Nonessential protein of unknown function; orthologs are present in S. bayanus, S. paradoxus and Ashbya gossypii. 1.61742588939691 1605.09460449219 1829.17510986328 --- --- --- --- 1799.56774902344 1507.19348144531 1702.99572753906 1858.78247070313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL012C /GEN=BUD3 /DB_XREF=GI:42759851 /SEG=NC_001135:-101316,101787 /DEF=Nonessential protein of unknown function; orthologs are present in S. bayanus, S. paradoxus and Ashbya gossypii. /NOTE=Ycl012cp; go_component: cellular_component unknown [goid GO:0008372] [evidence TAS] [pmid 12794934]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 12794934]; go_process: biological_process unknown [goid GO:0000004] [evidence TAS] [pmid 12794934] --- --- --- --- --- S0029705 // span:4-23 // numtm:1 S0029705 // YCL012C SGDID:S0029705, Chr III from 101787-101700,101632-101316, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YCL012C // cdna:known chromosome:SGD1:III:101316:101787:-1 gene:YCL012C // ensembl // 11 // --- GENSCAN00000022455 // ensembl // 6 // Cross Hyb Matching Probes /// GENEFINDER00000023365 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene -1.61742588939691 -1.19398588912271 1.16617671927646 -1.05670714255046 1.03290496938046 Max fold change below threshold 4 1.61742588939691 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777502_at SPAC513.06c.S1 --- 1.61732163838447 --- --- --- --- 14.2234477996826 14.8947629928589 11.8244028091431 9.85942649841309 0.274170011281967 0.149657994508743 0.366210997104645 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC513.06c /DEF=dihydrodiol dehydrogenase (predicted) --- --- --- --- --- --- SPAC513.06c // |||dihydrodiol dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.61732163838447 1.04719778232611 -1.52301541073229 -1.20288931536437 -1.44262425425778 Max fold change below threshold 4 1.61732163838447 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772499_at YDL077C.S1 Vacuolar protein that plays a critical role in the tethering steps of vacuolar membrane fusion by facilitating guanine nucleotide exchange on small guanosine triphosphatase Ypt7p 1.61729565321043 318.955047607422 550.653076171875 VAM6 7033 // vacuole organization and biogenesis // inferred from mutant phenotype /// 42145 // homotypic vacuole fusion, non-autophagic // inferred from mutant phenotype /// 42145 // homotypic vacuole fusion, non-autophagic // inferred from direct assay 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5774 // vacuolar membrane // inferred from direct assay /// 30897 // HOPS complex // inferred from physical interaction 17112 // Rab guanyl-nucleotide exchange factor activity // inferred from direct assay 512.194641113281 321.211883544922 316.698211669922 589.111511230469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL077C /GEN=VAM6 /DB_XREF=GI:6320126 /SEG=NC_001136:-316971,320120 /DEF=Required for the vacuolar morphogenesis in yeast /NOTE=Vam6p; go_component: vacuolar membrane [goid GO:0005774] [evidence IDA] [pmid 9111041]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 9111041]; go_function: Rab guanyl-nucleotide exchange factor activity [goid GO:0017112] [evidence IDA] [pmid 11062257]; go_process: homotypic vacuole fusion, non-autophagic [goid GO:0042145] [evidence IDA,IMP] [pmid 10944212]; go_process: vacuole organization and biogenesis [goid GO:0007033] [evidence IMP] [pmid 9111041] --- --- --- --- --- --- S0002235 // VAM6 SGDID:S0002235, Chr IV from 320120-316971, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025044 // cdna:Genscan chromosome:SGD1:IV:316971:320120:-1 // ensembl // 11 // --- /// YDL077C // cdna:known chromosome:SGD1:IV:316971:320120:-1 gene:YDL077C // ensembl // 11 // --- GENEFINDER00000023552 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene -1.40527639459515 -1.59456940216737 1.02037978278073 -1.61729565321043 1.15017117311108 Max fold change below threshold 4 1.61729565321043 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773148_at YNR010W.S1 Component of the Med9/10 module, which is a subcomplex within the RNA polymerase II Mediator complex; required for regulation of RNA polymerase II activity 1.61679333947263 602.199737548828 448.220581054688 CSE2 70 // mitotic sister chromatid segregation // inferred from mutant phenotype /// 6366 // transcription from RNA polymerase II promoter // inferred from physical interaction 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from physical interaction 422.025604248047 522.0712890625 682.328186035156 474.415557861328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR010W /GEN=CSE2 /DB_XREF=GI:6324337 /SEG=NC_001146:+643743,644192 /DEF=Component of the Med9/10 module, which is a subcomplex within the RNA polymerase II Mediator complex; required for regulation of RNA polymerase II activity /NOTE=Cse2p; go_component: mediator complex [goid GO:0000119] [evidence IDA] [pmid 9812975]; go_function: RNA polymerase II transcription mediator activity [goid GO:0016455] [evidence IPI] [pmid 9812975]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence IMP] [pmid 8336709]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IPI] [pmid 9812975] --- --- --- --- --- --- S0005293 // CSE2 SGDID:S0005293, Chr XIV from 643744-644193, Verified ORF // sgd // 11 // --- /// GENSCAN00000020045 // cdna:Genscan chromosome:SGD1:XIV:643744:644193:1 // ensembl // 11 // --- /// YNR010W // cdna:known chromosome:SGD1:XIV:643744:644193:1 gene:YNR010W // ensembl // 11 // --- --- No cerevisiae_gene -1.04134330830804 1.23706069917893 1.24433530130845 1.61679333947263 1.12413927753656 Max fold change below threshold 4 1.61679333947263 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771954_at YBL105C.S1 Protein serine/threonine kinase essential for cell wall remodeling during growth; localized to sites of polarized growth and the mother-daughter bud neck; homolog of the alpha, beta, and gamma isoforms of mammalian protein kinase C (PKC) 1.61653681760652 785.255432128906 596.772644042969 PKC1 6468 // protein amino acid phosphorylation // inferred from direct assay /// 7015 // actin filament organization // inferred from genetic interaction /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 7165 // signal transduction // inferred from mutant phenotype /// 7243 // protein kinase cascade // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5856 // cytoskeleton // inferred from direct assay /// 30427 // site of polarized growth // inferred from direct assay 4697 // protein kinase C activity // inferred from direct assay 529.453063964844 714.630493164063 855.88037109375 664.092224121094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL105C /GEN=PKC1 /DB_XREF=GI:6319363 /SEG=NC_001134:-14241,17696 /DEF=Protein Kinase C /NOTE=Pkc1p; go_component: site of polarized growth (sensu Saccharomyces) [goid GO:0000134] [evidence IDA] [pmid 10893184]; go_function: protein kinase C activity [goid GO:0004697] [evidence IDA] [pmid 8207005]; go_process: actin filament organization [goid GO:0007015] [evidence IGI] [pmid 12810699]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 7874200]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 8207005]; go_process: protein kinase cascade [goid GO:0007243] [evidence IMP] [pmid 7874200]; go_process: signal transduction [goid GO:0007165] [evidence IMP] [pmid 7874200] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 3.0E-76 /// ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 3.0E-77 /// hanks // 1.2.13 // AGC group; AGC I Diacylglycerol-activated/phospholipid-dependent protein kinase C (PKC) family; PKC1 // 1.0E-157 --- --- S0000201 // PKC1 SGDID:S0000201, Chr II from 17696-14241, reverse complement, Verified ORF // sgd // 11 // --- /// M32491 // S.cerevisiae protein kinase C-like protein (PKC1) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000021055 // cdna:Genscan chromosome:SGD1:II:14241:17594:-1 // ensembl // 11 // --- /// GENEFINDER00000022318 // cdna:GeneFinder chromosome:SGD1:II:14241:17696:-1 // ensembl // 11 // --- /// YBL105C // cdna:known chromosome:SGD1:II:14241:17696:-1 gene:YBL105C // ensembl // 11 // --- --- No cerevisiae_gene -1.29054703230504 1.34975230441109 1.5984344564375 1.61653681760652 1.25429857586997 Max fold change below threshold 4 1.61653681760652 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779350_at YER018C.S1 Component of the evolutionarily conserved kinetochore-associated Ndc80 complex (Ndc80p-Nuf2p-Spc24p-Spc25p); involved in chromosome segregation, spindle checkpoint activity and kinetochore clustering 1.61643134477545 1531.72821044922 1071.96075439453 SPC25 7020 // microtubule nucleation // inferred from physical interaction /// 7059 // chromosome segregation // inferred from mutant phenotype /// 7059 // chromosome segregation // inferred from genetic interaction 778 // condensed nuclear chromosome kinetochore // inferred from mutant phenotype /// 778 // condensed nuclear chromosome kinetochore // inferred from physical interaction /// 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 780 // condensed nuclear chromosome, pericentric region // inferred from genetic interaction /// 780 // condensed nuclear chromosome, pericentric region // inferred from physical interaction /// 31262 // Ndc80 complex // inferred from direct assay /// 31262 // Ndc80 complex // inferred from physical interaction 5200 // structural constituent of cytoskeleton // inferred from physical interaction 972.1142578125 1571.35595703125 1492.10046386719 1171.80725097656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER018C /GEN=SPC25 /DB_XREF=GI:6320855 /SEG=NC_001137:-191958,192623 /DEF=Spindle Pole Component of molecular weight 25kDa /NOTE=Spc25p; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IMP,IPI] [pmid 11179222]; go_component: condensed nuclear chromosome, pericentric region [goid GO:0000780] [evidence IGI,IPI] [pmid 11266451]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9585415]; go_process: chromosome segregation [goid GO:0007059] [evidence IGI,IMP] [pmid 11266451]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752] --- --- --- --- --- --- S0000820 // SPC25 SGDID:S0000820, Chr V from 192623-191958, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016820 // cdna:Genscan chromosome:SGD1:V:191958:192623:-1 // ensembl // 11 // --- /// GENEFINDER00000019671 // cdna:GeneFinder chromosome:SGD1:V:191958:192623:-1 // ensembl // 11 // --- /// YER018C // cdna:known chromosome:SGD1:V:191958:192623:-1 gene:YER018C // ensembl // 11 // --- --- No cerevisiae_gene -1.32036056589297 1.61643134477545 1.0984269598019 1.53490235522806 1.20542131910854 Max fold change below threshold 4 1.61643134477545 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779151_at SPAC29A4.18.S1 --- 1.61617633846893 --- --- --- --- 6.18330717086792 8.40930080413818 8.41747283935547 9.99331474304199 0.0461426004767418 0.0952147990465164 0.0107421996071935 0.000732421991415322 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29A4.18 /GEN=prw1 /DEF=WD repeat protein --- --- --- --- --- --- SPAC29A4.18 // |prw1||WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.2265317430297 1.36000049354783 1.16826394937742 1.361322122086 1.61617633846893 Max fold change below threshold 4 1.61617633846893 Max fold change below threshold PAAPPP No 3 0 PAPP 1 3 0 No No 2 < x = 3
1773874_at SPAC32A11.03c.S1 --- 1.61583903526298 --- --- --- --- 9.8687219619751 6.81421566009521 10.4496049880981 15.9462661743164 0.035400390625 0.1884765625 0.149657994508743 0.030273400247097 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC32A11.03c /DEF=homeobox domain --- --- --- --- --- --- SPAC32A11.03c // |||homeobox domain|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.61136536592932 -1.44825500897593 1.00001430213551 1.05886101851498 1.61583903526298 Max fold change below threshold 4 1.61583903526298 Max fold change below threshold PPAMAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1772114_at YBR172C.S1 Protein of unknown function that interacts with Myo2p; has similarity to S. pombe Mpd2 1.61582647797411 588.9248046875 856.139251708984 SMY2 7010 // cytoskeleton organization and biogenesis // traceable author statement 5737 // cytoplasm // inferred from direct assay --- 877.986694335938 634.482666015625 543.366943359375 834.291809082031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR172C /GEN=SMY2 /DB_XREF=GI:37362621 /SEG=NC_001134:-579107,581329 /DEF=partial suppressor of myo2-66 /NOTE=Smy2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cytoskeleton organization and biogenesis [goid GO:0007010] [evidence TAS] [pmid 10924454] --- --- --- --- scop // a.2.7.Phenylalanyl-tRNA synthetase (PheRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Phenylalanyl-tRNA synthetase (PheRS) // 9.30000019073486 --- S0000376 // SMY2 SGDID:S0000376, Chr II from 581367-579145, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021279 // cdna:Genscan chromosome:SGD1:II:579145:579747:-1 // ensembl // 11 // --- /// GENEFINDER00000022247 // cdna:GeneFinder chromosome:SGD1:II:579145:581367:-1 // ensembl // 11 // --- /// YBR172C // cdna:known chromosome:SGD1:II:579145:581367:-1 gene:YBR172C // ensembl // 11 // --- --- No cerevisiae_gene -1.39839878958478 -1.38378357891075 -1.3208523462109 -1.61582647797411 -1.05237362368688 Max fold change below threshold 4 1.61582647797411 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775734_at YPR124W.S1 High-affinity copper transporter of the plasma membrane, mediates nearly all copper uptake under low copper conditions; transcriptionally induced at low copper levels and degraded at high copper levels 1.61577388390168 2964.31091308594 1900.51348876953 CTR1 15677 // copper ion import // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay 15088 // copper uptake transporter activity // inferred from mutant phenotype 1871.28186035156 2905.05346679688 3023.568359375 1929.7451171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR124W /GEN=CTR1 /DB_XREF=GI:6325380 /SEG=NC_001148:+786202,787422 /DEF=High-affinity copper transporter of the plasma membrane, mediates nearly all copper uptake under low copper conditions; transcriptionally induced at low copper levels and degraded at high copper levels /NOTE=Ctr1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 7929270]; go_function: copper uptake transporter activity [goid GO:0015088] [evidence IMP] [pmid 7929270]; go_process: copper ion import [goid GO:0015677] [evidence IMP] [pmid 7929270] --- --- --- --- --- S0006328 // span:155-177,239-258,262-281 // numtm:3 S0006328 // CTR1 SGDID:S0006328, Chr XVI from 786204-787424, Verified ORF // sgd // 10 // --- /// GENSCAN00000017277 // cdna:Genscan chromosome:SGD1:XVI:786204:787424:1 // ensembl // 10 // --- /// GENEFINDER00000020786 // cdna:GeneFinder chromosome:SGD1:XVI:786558:787424:1 // ensembl // 10 // --- /// YPR124W // cdna:known chromosome:SGD1:XVI:786204:787424:1 gene:YPR124W // ensembl // 10 // --- --- No cerevisiae_gene -1.34332450258701 1.55244035030142 1.3003632659321 1.61577388390168 1.03124235748481 Max fold change below threshold 4 1.61577388390168 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771344_at YDR534C.S1 Mannoprotein that is incorporated into the cell wall via a glycosylphosphatidylinositol (GPI) anchor, involved in the retention of siderophore-iron in the cell wall 1.61575661121375 1220.64306640625 1528.49224853516 FIT1 15891 // siderophore transport // inferred from direct assay 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 1502.04418945313 1299.30139160156 1141.98474121094 1554.94030761719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR534C /GEN=FIT1 /DB_XREF=GI:6320743 /SEG=NC_001136:-1503301,1504887 /DEF=Mannoprotein that is incorporated into the cell wall via a glycosylphosphatidylinositol (GPI) anchor, involved in the retention of siderophore-iron in the cell wall /NOTE=Fit1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: siderochrome transport [goid GO:0015891] [evidence IDA] [pmid 12196168] --- --- --- --- --- --- S0002942 // FIT1 SGDID:S0002942, Chr IV from 1504889-1503303, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023694 // cdna:GeneFinder chromosome:SGD1:IV:1503303:1504889:-1 // ensembl // 11 // --- /// GENSCAN00000025516 // cdna:Genscan chromosome:SGD1:IV:1503303:1504889:-1 // ensembl // 11 // --- /// YDR534C // cdna:known chromosome:SGD1:IV:1503303:1504889:-1 gene:YDR534C // ensembl // 11 // --- --- No cerevisiae_gene -1.61575661121375 -1.15603985277169 -1.29283895328001 -1.31529269634583 1.03521608654092 Max fold change below threshold 4 1.61575661121375 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778344_at YGL010W.S1 Hypothetical protein 1.61559654288981 1067.08654785156 1474.17816162109 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 1490.07995605469 1053.08666992188 1081.08642578125 1458.2763671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL010W /GEN=SCL1 /DB_XREF=GI:6321428 /SEG=NC_001139:+475548,476072 /DEF=Hypothetical ORF /NOTE=Ygl010wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002978 // span:24-46,66-88,101-118,128-150 // numtm:4 S0002978 // YGL010W SGDID:S0002978, Chr VII from 475550-476074, Uncharacterized ORF // sgd // 11 // --- /// YGL010W // cdna:known chromosome:SGD1:VII:475550:476074:1 gene:YGL010W // ensembl // 11 // --- --- No cerevisiae_gene -1.61559654288981 -1.41496421767947 1.07306679468343 -1.3783171451606 -1.02180902713834 Max fold change below threshold 4 1.61559654288981 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772647_at YDR018C.S1 Hypothetical protein 1.61516116492478 811.509124755859 544.727813720703 --- 8654 // phospholipid biosynthesis // inferred from sequence similarity --- 8415 // acyltransferase activity // inferred from sequence similarity 513.267028808594 794.00927734375 829.008972167969 576.188598632813 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR018C /GEN=KCS1 /DB_XREF=GI:6320221 /SEG=NC_001136:-482666,483856 /DEF=Hypothetical ORF /NOTE=Ydr018cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: acyltransferase activity [goid GO:0008415] [evidence ISS] [pmid 9259571]; go_process: phospholipid biosynthesis [goid GO:0008654] [evidence ISS] [pmid 9259571] --- --- --- --- --- S0002425 // span:31-53,68-87,124-143,372-391 // numtm:4 S0002425 // YDR018C SGDID:S0002425, Chr IV from 483856-482666, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDR018C // cdna:known chromosome:SGD1:IV:482666:483856:-1 gene:YDR018C // ensembl // 11 // --- --- No cerevisiae_gene -1.20471806544103 1.54697113349911 1.05496787094677 1.61516116492478 1.12259032100751 Max fold change below threshold 4 1.61516116492478 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775869_at YAL049C.S1 Hypothetical protein 1.61493237279383 3684.46276855469 3415.30493164063 --- --- 5737 // cytoplasm // inferred from direct assay --- 3444.865234375 3633.73950195313 3735.18603515625 3385.74462890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL049C /GEN=OAF1 /DB_XREF=GI:6319267 /SEG=NC_001133:-51858,52598 /DEF=Hypothetical ORF /NOTE=Yal049cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000047 // YAL049C SGDID:S0000047, Chr I from 52596-51856, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018238 // cdna:GeneFinder chromosome:SGD1:I:51856:52596:-1 // ensembl // 11 // --- /// GENSCAN00000020334 // cdna:Genscan chromosome:SGD1:I:51856:52596:-1 // ensembl // 11 // --- /// YAL049C // cdna:known chromosome:SGD1:I:51856:52596:-1 gene:YAL049C // ensembl // 11 // --- --- No cerevisiae_gene -1.61493237279383 1.05482776675657 1.07916794470484 1.08427638848807 -1.0174616257127 Max fold change below threshold 4 1.61493237279383 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778351_at YGR047C.S1 One of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part of the TauA domain of TFIIIC that binds BoxA DNA promoter sites of tRNA and similar genes; has TPR motifs; human homolog is TFIIIC-102 1.61479390384809 1074.12420654297 1513.76593017578 TFC4 6384 // transcription initiation from RNA polymerase III promoter // traceable author statement 127 // transcription factor TFIIIC complex // traceable author statement 3709 // RNA polymerase III transcription factor activity // traceable author statement 1506.92224121094 1215.05053710938 933.197875976563 1520.60961914063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR047C /GEN=TFC4 /DB_XREF=GI:6321484 /SEG=NC_001139:-586394,589471 /DEF=transcription factor tau (TFIIIC) subunit 131 /NOTE=Tfc4p; go_component: transcription factor TFIIIC complex [goid GO:0000127] [evidence TAS] [pmid 10384303]; go_function: RNA polymerase III transcription factor activity [goid GO:0003709] [evidence TAS] [pmid 10384303]; go_process: transcription initiation from Pol III promoter [goid GO:0006384] [evidence TAS] [pmid 10384303] --- --- --- --- --- --- S0003279 // TFC4 SGDID:S0003279, Chr VII from 589473-586396, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019379 // cdna:Genscan chromosome:SGD1:VII:586396:589473:-1 // ensembl // 11 // --- /// GENEFINDER00000021504 // cdna:GeneFinder chromosome:SGD1:VII:586396:589473:-1 // ensembl // 11 // --- /// YGR047C // cdna:known chromosome:SGD1:VII:586396:589473:-1 gene:YGR047C // ensembl // 11 // --- --- No cerevisiae_gene -1.39998044857368 -1.24021363325013 -1.0879149564317 -1.61479390384809 1.00908300213201 Max fold change below threshold 4 1.61479390384809 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774424_at YNL052W.S1 Subunit Va of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; predominantly expressed during aerobic growth while its isoform Vb (Cox5Bp) is expressed during anaerobic growth 1.61477052648354 5455.24877929688 3761.94226074219 COX5A 6123 // mitochondrial electron transport, cytochrome c to oxygen // inferred from direct assay /// 9060 // aerobic respiration // traceable author statement 5751 // respiratory chain complex IV (sensu Eukaryota) // inferred from physical interaction 4129 // cytochrome-c oxidase activity // inferred from direct assay 4019.81640625 6491.0810546875 4419.41650390625 3504.06811523438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL052W /GEN=COX5A /DB_XREF=GI:6324276 /SEG=NC_001146:+531723,532184 /DEF=Subunit Va of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; predominantly expressed during aerobic growth while its isoform Vb (Cox5Bp) is expressed during anaerobic growth /NOTE=Cox5ap; go_component: respiratory chain complex IV (sensu Eukarya) [goid GO:0005751] [evidence IPI] [pmid 1331058]; go_function: cytochrome-c oxidase activity [goid GO:0004129] [evidence IDA] [pmid 1847916]; go_process: aerobic respiration [goid GO:0009060] [evidence TAS] [pmid 7814361] --- --- --- --- --- S0004997 // span:93-115 // numtm:1 S0004997 // COX5A SGDID:S0004997, Chr XIV from 531724-532185, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020615 // cdna:GeneFinder chromosome:SGD1:XIV:531724:532185:1 // ensembl // 11 // --- /// YNL052W // cdna:known chromosome:SGD1:XIV:531724:532185:1 gene:YNL052W // ensembl // 11 // --- GENSCAN00000019993 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.43423621494421 1.61477052648354 -1.22532741173454 1.09940754931866 -1.14718557803524 Max fold change below threshold 4 1.61477052648354 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780107_at YML094W.S1 Subunit of the heterohexameric cochaperone prefoldin complex which binds specifically to cytosolic chaperonin and transfers target proteins to it 1.61431249459929 584.907455444336 637.621551513672 GIM5 7021 // tubulin folding // inferred from mutant phenotype /// 7021 // tubulin folding // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay /// 16272 // prefoldin complex // inferred from sequence similarity /// 16272 // prefoldin complex // inferred from physical interaction 15631 // tubulin binding // inferred from direct assay 616.628234863281 480.233123779297 689.581787109375 658.614868164063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML094W /GEN=GIM5 /DB_XREF=GI:6323544 /SEG=NC_001145:+82275,82849 /DEF=Prefoldin subunit 5; putative homolog of subunit 5 of bovine prefoldin, a chaperone comprised of six subunits /NOTE=Gim5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9463374]; go_component: prefoldin complex [goid GO:0016272] [evidence IPI] [pmid 9463374]; go_component: prefoldin complex [goid GO:0016272] [evidence ISS] [pmid 9630229]; go_function: tubulin binding [goid GO:0015631] [evidence IDA] [pmid 9463374]; go_process: tubulin folding [goid GO:0007021] [evidence IMP,ISS] [pmid 9463374] --- --- --- --- scop // a.2.5.Prefoldin // All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin // 0.0350000001490116 --- S0004559 // GIM5 SGDID:S0004559, Chr XIII from 82275-82290,82374-82849, intron sequence removed, Verified ORF // sgd // 11 // --- /// YML094W // cdna:known chromosome:SGD1:XIII:82275:82849:1 gene:YML094W // ensembl // 11 // --- GENSCAN00000018639 // ensembl // 7 // Cross Hyb Matching Probes /// GENEFINDER00000021972 // ensembl // 7 // Cross Hyb Matching Probes /// YML094C-A // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene 1.33198100691915 -1.28401854085073 1.61431249459929 1.11831043102051 1.06809067591608 Max fold change below threshold 4 1.61431249459929 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775331_at YPL171C.S1 Widely conserved NADPH oxidoreductase containing flavin mononucleotide (FMN), homologous to Oye2p with slight differences in ligand binding and catalytic properties; may be involved in sterol metabolism 1.61418728291105 549.713775634766 737.358673095703 OYE3 --- --- 3959 // NADPH dehydrogenase activity // inferred from direct assay /// 3959 // NADPH dehydrogenase activity // inferred from sequence similarity 715.652404785156 455.185913085938 644.241638183594 759.06494140625 0.000732421991415322 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL171C /GEN=OYE3 /DB_XREF=GI:6325086 /SEG=NC_001148:-226168,227370 /DEF=Widely conserved NADPH oxidoreductase containing flavin mononucleotide (FMN), homologous to Oye2p with slight differences in ligand binding and catalytic properties; may be involved in sterol metabolism /NOTE=Oye3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: NADPH dehydrogenase activity [goid GO:0003959] [evidence IDA,ISS] [pmid 7836424]; go_process: biological_process unknown [goid GO:0000004] [evidence NAS] [pmid 7836424] --- --- --- --- --- --- S0006092 // OYE3 SGDID:S0006092, Chr XVI from 227370-226168, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017057 // cdna:Genscan chromosome:SGD1:XVI:226168:227370:-1 // ensembl // 11 // --- /// GENEFINDER00000020743 // cdna:GeneFinder chromosome:SGD1:XVI:226168:227370:-1 // ensembl // 11 // --- /// YPL171C // cdna:known chromosome:SGD1:XVI:226168:227370:-1 gene:YPL171C // ensembl // 11 // --- --- No cerevisiae_gene -1.61418728291105 -1.57222001870265 1.2683943001978 -1.11084469299889 1.06066148360687 Max fold change below threshold 4 1.61418728291105 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777880_at SPCC576.03c.S1 --- 1.61415877162034 --- --- --- --- 9.21950054168701 6.20271778106689 7.28796482086182 6.54441833496094 0.432372987270355 0.633789002895355 0.725830018520355 0.398925989866257 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC576.03c /DEF=thioredoxin peroxidase --- --- --- --- --- --- AF083335 // Schizosaccharomyces pombe thioredoxin peroxidase mRNA, complete cds. // gb // 11 // --- /// SPCC576.03c // |tpx1||thioredoxin peroxidase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.23687315661681 -1.48636466579674 -1.61415877162034 -1.26503087875729 -1.40875782534187 Max fold change below threshold 4 1.61415877162034 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770534_at YJL100W.S1 Phosphatidylinositol 4-kinase that binds Las17p, which is a homolog of human Wiskott-Aldrich Syndrome protein involved in actin patch assembly and actin polymerization 1.61398357659543 1117.03375244141 1568.61956787109 LSB6 7015 // actin filament organization // inferred from physical interaction /// 46854 // phosphoinositide phosphorylation // inferred from direct assay /// 48017 // inositol lipid-mediated signaling // traceable author statement 5624 // membrane fraction // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5774 // vacuolar membrane // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 4430 // 1-phosphatidylinositol 4-kinase activity // inferred from mutant phenotype /// 4430 // 1-phosphatidylinositol 4-kinase activity // inferred from direct assay 1509.92163085938 1075.43798828125 1158.62951660156 1627.31750488281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL100W /GEN=LSB6 /DB_XREF=GI:6322361 /SEG=NC_001142:+237180,239003 /DEF=LAs17 Binding protein /NOTE=Lsb6p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 12361950]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12523934]; go_component: vacuolar membrane [goid GO:0005774] [evidence IDA] [pmid 12523934]; go_function: 1-phosphatidylinositol 4-kinase activity [goid GO:0004430] [evidence IMP] [pmid 12361950]; go_function: 1-phosphatidylinositol 4-kinase activity [goid GO:0004430] [evidence IDA] [pmid 12523934]; go_process: actin filament organization [goid GO:0007015] [evidence IPI] [pmid 10512884] --- --- --- --- --- --- S0003636 // LSB6 SGDID:S0003636, Chr X from 237180-239003, Verified ORF // sgd // 11 // --- /// GENSCAN00000024062 // cdna:Genscan chromosome:SGD1:X:237180:239003:1 // ensembl // 11 // --- /// GENEFINDER00000024270 // cdna:GeneFinder chromosome:SGD1:X:237180:239003:1 // ensembl // 11 // --- /// YJL100W // cdna:known chromosome:SGD1:X:237180:239003:1 gene:YJL100W // ensembl // 11 // --- --- No cerevisiae_gene -1.61398357659543 -1.40400622566115 1.03832859120799 -1.30319624109716 1.07774964714998 Max fold change below threshold 4 1.61398357659543 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777821_at YER107C.S1 Component of the nuclear pore complex required for polyadenylated RNA export but not for protein import, homologous to S. pombe Rae1p 1.61377553550754 568.232925415039 847.961822509766 GLE2 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6606 // protein-nucleus import // inferred from mutant phenotype /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6998 // nuclear membrane organization and biogenesis // inferred from mutant phenotype /// 6999 // nuclear pore organization and biogenesis // inferred from mutant phenotype 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement 795.407592773438 492.886138916016 643.579711914063 900.516052246094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER107C /GEN=GLE2 /DB_XREF=GI:6320954 /SEG=NC_001137:-373444,374541 /DEF=Nuclear pore protein required for poly(A)+ RNA export, has beta-transducin (WD-40) repeats /NOTE=Gle2p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 9442897]; go_process: nuclear membrane organization and biogenesis [goid GO:0006998] [evidence IMP] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence IMP] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus import [goid GO:0006606] [evidence IMP] [pmid 9442897]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0000909 // GLE2 SGDID:S0000909, Chr V from 374541-373444, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016891 // cdna:Genscan chromosome:SGD1:V:373444:374487:-1 // ensembl // 11 // --- /// GENEFINDER00000019726 // cdna:GeneFinder chromosome:SGD1:V:373444:374487:-1 // ensembl // 11 // --- /// YER107C // cdna:known chromosome:SGD1:V:373444:374541:-1 gene:YER107C // ensembl // 11 // --- --- No cerevisiae_gene 1.08958055266906 -1.61377553550754 1.15681511557972 -1.23591153985856 1.13214414902197 Max fold change below threshold 4 1.61377553550754 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769571_at YDR473C.S1 Splicing factor, component of the U4/U6-U5 snRNP complex 1.61374918443412 462.947341918945 394.266098022461 PRP3 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 31202 // RNA splicing factor activity, transesterification mechanism // inferred from physical interaction 360.110137939453 440.095184326172 485.799499511719 428.422058105469 0.000732421991415322 0.000732421991415322 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR473C /GEN=PRP3 /DB_XREF=GI:6320681 /SEG=NC_001136:-1404433,1405842 /DEF=Splicing factor, component of the U4/U6-U5 snRNP complex /NOTE=Prp3p; go_component: U4/U6 x U5 tri-snRNP complex [goid GO:0046540] [evidence TAS] [pmid 10377396]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10377396] --- --- --- --- --- --- S0002881 // PRP3 SGDID:S0002881, Chr IV from 1405844-1404435, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023505 // cdna:GeneFinder chromosome:SGD1:IV:1404435:1405844:-1 // ensembl // 11 // --- /// GENSCAN00000025470 // cdna:Genscan chromosome:SGD1:IV:1404435:1405304:-1 // ensembl // 11 // --- /// YDR473C // cdna:known chromosome:SGD1:IV:1404435:1405844:-1 gene:YDR473C // ensembl // 11 // --- --- No cerevisiae_gene -1.11853425722302 1.22211273152262 1.61374918443412 1.34903033358477 1.1896972980458 Max fold change below threshold 4 1.61374918443412 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777618_at YDL180W.S1 Hypothetical protein 1.61362535202832 747.163269042969 548.856231689453 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 491.167785644531 701.765747070313 792.560791015625 606.544677734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL180W /GEN=INH1 /DB_XREF=GI:6320021 /SEG=NC_001136:+135897,137540 /DEF=Hypothetical ORF /NOTE=Ydl180wp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002339 // span:21-41,61-83,90-112,140-162,338-360,391-410,524-546 // numtm:7 S0002339 // YDL180W SGDID:S0002339, Chr IV from 135897-137540, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024968 // cdna:Genscan chromosome:SGD1:IV:136209:137540:1 // ensembl // 11 // --- /// YDL180W // cdna:known chromosome:SGD1:IV:135897:137540:1 gene:YDL180W // ensembl // 11 // --- --- No cerevisiae_gene 1.46321626415243 1.42876989815084 1.10804316432868 1.61362535202832 1.23490321527997 Max fold change below threshold 4 1.61362535202832 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777200_at SPCC11E10.06c.S1 --- 1.6134945506053 --- --- --- --- 8.34468364715576 10.2571983337402 5.17180776596069 7.08460187911987 0.194580003619194 0.219482004642487 0.398925989866257 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC11E10.06c /DEF=RNA polymerase II (elongator subunit) (predicted) (PMID 11390369) --- --- --- --- --- --- SPCC11E10.06c // |||RNA polymerase II |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.43451933179209 1.22918959752732 1.00285141716576 -1.6134945506053 -1.17786204356093 Max fold change below threshold 4 1.6134945506053 Max fold change below threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1777007_at YKL101W.S1 Nim1p-related protein kinase that regulates the morphogenesis and septin checkpoints; associates with the assembled septin filament; required along with Hsl7p for bud neck recruitment, phosphorylation, and degradation of Swe1p 1.61325823257694 188.943420410156 210.981391906738 HSL1 74 // regulation of cell cycle // inferred from mutant phenotype /// 78 // cell morphogenesis checkpoint // traceable author statement /// 86 // G2/M transition of mitotic cell cycle // inferred from genetic interaction /// 86 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 135 // septin checkpoint // inferred from genetic interaction /// 135 // septin checkpoint // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from direct assay 5935 // bud neck // inferred from direct assay /// 5940 // septin ring // inferred from direct assay /// 5940 // septin ring // inferred from physical interaction 4672 // protein kinase activity // inferred from direct assay 185.991455078125 214.358871459961 163.527969360352 235.971328735352 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL101W /GEN=HSL1 /DB_XREF=GI:6322748 /SEG=NC_001143:+248566,253122 /DEF=Negative regulator of Swe1 kinase /NOTE=Hsl1p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 10805747]; go_component: septin ring [goid GO:0005940] [evidence IDA,IPI] [pmid 9925642]; go_function: protein kinase activity [goid GO:0004672] [evidence IDA] [pmid 9925642]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence IGI,IMP] [pmid 10490630]; go_process: cell morphogenesis checkpoint [goid GO:0000078] [evidence TAS] [pmid 10679396]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 9925642]; go_process: regulation of cell cycle [goid GO:0000074] [evidence IMP] [pmid 8647431]; go_process: septin checkpoint [goid GO:0000135] [evidence IGI,IMP] [pmid 9925642] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 5.0E-67 /// hanks // 2.2.11 // CaMK Group; CaMK II KIN1/SNF1/Nim1; YKL453 // 1.0E-148 --- --- S0001584 // HSL1 SGDID:S0001584, Chr XI from 248566-253122, Verified ORF // sgd // 10 // --- /// GENSCAN00000018341 // cdna:Genscan chromosome:SGD1:XI:248566:253122:1 // ensembl // 10 // --- /// GENEFINDER00000022958 // cdna:GeneFinder chromosome:SGD1:XI:248566:253122:1 // ensembl // 10 // --- /// YKL101W // cdna:known chromosome:SGD1:XI:248566:253122:1 gene:YKL101W // ensembl // 10 // --- --- No cerevisiae_gene 1.61325823257694 1.15251999813605 -1.48774403813582 -1.13736785092875 1.26872134333393 Max fold change below threshold 4 1.61325823257694 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772868_at YPL042C.S1 Component of RNA polymerase II holoenzyme, involved in RNA pol II carboxy-terminal domain phosphorylation 1.61314626706665 645.596801757813 654.38330078125 SSN3 122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 6468 // protein amino acid phosphorylation // traceable author statement /// 7126 // meiosis // traceable author statement /// 45449 // regulation of transcription // inferred from mutant phenotype /// 45449 // regulation of transcription // inferred from physical interaction 5667 // transcription factor complex // traceable author statement 4693 // cyclin-dependent protein kinase activity // traceable author statement /// 16251 // general RNA polymerase II transcription factor activity // traceable author statement 656.919799804688 618.1767578125 673.016845703125 651.846801757813 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL042C /GEN=SSN3 /DB_XREF=GI:6325215 /SEG=NC_001148:-473035,474702 /DEF=Component of RNA polymerase II holoenzyme, involved in RNA pol II carboxy-terminal domain phosphorylation. Activity of the kinase (SSN3)/cyclin (SSN8) pair required, along with SSN6 & TUP1, for transcriptional repression of a-specific genes /NOTE=Ssn3p; go_component: transcription factor complex [goid GO:0005667] [evidence TAS] [pmid 9774381]; go_function: cyclin-dependent protein kinase activity [goid GO:0004693] [evidence TAS] [pmid 9774381]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9774381]; go_process: meiosis [goid GO:0007126] [evidence TAS] [pmid 12455972]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence TAS] [pmid 9774381]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 9774381]; go_process: regulation of transcription [goid GO:0045449] [evidence IMP,IPI] [pmid 11486018] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 5.0E-70 /// hanks // 3.1.1 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; CDC2Hs // 5.0E-66 --- --- S0005963 // SSN3 SGDID:S0005963, Chr XVI from 474704-473037, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017156 // cdna:Genscan chromosome:SGD1:XVI:473037:474704:-1 // ensembl // 11 // --- /// GENEFINDER00000020753 // cdna:GeneFinder chromosome:SGD1:XVI:473037:474704:-1 // ensembl // 11 // --- /// YPL042C // cdna:known chromosome:SGD1:XVI:473037:474704:-1 gene:YPL042C // ensembl // 11 // --- --- No cerevisiae_gene -1.61314626706665 -1.06267308096358 1.08778187144185 1.02450382208486 -1.00778250047894 Max fold change below threshold 4 1.61314626706665 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769916_at YLL050C.S1 Cofilin, promotes actin filament depolarization in a pH-dependent manner; binds both actin monomers and filaments and severs filaments , thought to be regulated by phosphorylation at SER4, ubiquitous and essential in eukaryotes 1.61295904330997 4823.87585449219 5735.88745117188 COF1 7015 // actin filament organization // inferred from physical interaction /// 7015 // actin filament organization // inferred from mutant phenotype /// 30042 // actin filament depolymerization // inferred from direct assay /// 51014 // actin filament severing // inferred from direct assay 30479 // actin cortical patch // inferred from direct assay 5515 // protein binding // inferred from direct assay 6427.72802734375 5662.6982421875 3985.05346679688 5044.046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL050C /GEN=COF1 /DB_XREF=GI:6322978 /SEG=NC_001144:-39803,40413 /DEF=yeast cortical cytoskeleton component; mammalian cofilin homolog /NOTE=Cof1p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10652251]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 14680631]; go_process: actin filament depolymerization [goid GO:0030042] [evidence IDA] [pmid 8440472]; go_process: actin filament organization [goid GO:0007015] [evidence IPI] [pmid 10652251]; go_process: actin filament organization [goid GO:0007015] [evidence IMP] [pmid 9153752]; go_process: actin filament severing [goid GO:0051014] [evidence IDA] [pmid 14680631] --- --- --- --- --- --- S0003973 // COF1 SGDID:S0003973, Chr XII from 40413-40400,40220-39803, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000017668 // cdna:Genscan chromosome:SGD1:XII:39803:40273:-1 // ensembl // 10 // --- /// GENEFINDER00000024631 // cdna:GeneFinder chromosome:SGD1:XII:39803:40273:-1 // ensembl // 10 // --- /// YLL050C // cdna:known chromosome:SGD1:XII:39803:40413:-1 gene:YLL050C // ensembl // 11 // --- --- No cerevisiae_gene -1.38293574941818 -1.13509986801994 -1.21084754536843 -1.61295904330997 -1.27431964583869 Max fold change below threshold 4 1.61295904330997 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774150_at YLR386W.S1 Protein involved in regulated synthesis of PtdIns(3,5)P(2), in control of trafficking of some proteins to the vacuole lumen via the MVB, and in maintenance of vacuole size and acidity; activator of Fab1p 1.612613819287 156.735137939453 235.19172668457 VAC14 11 // vacuole inheritance // inferred from mutant phenotype /// 6644 // phospholipid metabolism // inferred from mutant phenotype /// 6644 // phospholipid metabolism // inferred from genetic interaction 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 5773 // vacuole // inferred from direct assay 8047 // enzyme activator activity // inferred from mutant phenotype 222.291442871094 137.845428466797 175.624847412109 248.092010498047 0.000244141003349796 0.000732421991415322 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR386W /GEN=VAC14 /DB_XREF=GI:6323418 /SEG=NC_001144:+893628,896270 /DEF=VACuole morphology and inheritance mutant. Vac14 is essential for the regulated synthesis of PtdIns(3,5)P(2), for control of trafficking of some proteins to the vacuole lumen via the MVB, and for maintenance of vacuole size and acidity. /NOTE=Vac14p; go_component: vacuole [goid GO:0005773] [evidence IDA] [pmid 11889142]; go_function: enzyme activator activity [goid GO:0008047] [evidence IMP] [pmid 11889142]; go_process: phospholipid metabolism [goid GO:0006644] [evidence IGI,IMP] [pmid 9372916]; go_process: vacuole inheritance [goid GO:0000011] [evidence IMP] [pmid 9372916] --- --- --- --- --- --- S0004378 // VAC14 SGDID:S0004378, Chr XII from 893628-896270, Verified ORF // sgd // 11 // --- /// GENSCAN00000018110 // cdna:Genscan chromosome:SGD1:XII:893628:896270:1 // ensembl // 11 // --- /// GENEFINDER00000024770 // cdna:GeneFinder chromosome:SGD1:XII:893628:896270:1 // ensembl // 11 // --- /// YLR386W // cdna:known chromosome:SGD1:XII:893628:896270:1 gene:YLR386W // ensembl // 11 // --- --- No cerevisiae_gene -1.36892619187116 -1.612613819287 1.29136979640162 -1.26571750038011 1.11606640045931 Max fold change below threshold 4 1.612613819287 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779795_at YMR119W.S1 Putative integral membrane E3 ubiquitin ligase; genetic interactions suggest a role in negative regulation of amino acid uptake 1.61259501020654 385.648620605469 528.778167724609 ASI1 6511 // ubiquitin-dependent protein catabolism // inferred from genetic interaction 5789 // endoplasmic reticulum membrane // inferred from genetic interaction /// 5789 // endoplasmic reticulum membrane // inferred from sequence similarity 4842 // ubiquitin-protein ligase activity // inferred from genetic interaction /// 4842 // ubiquitin-protein ligase activity // inferred from sequence similarity 523.415771484375 324.579803466797 446.717437744141 534.140563964844 0.000244141003349796 0.000244141003349796 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR119W /GEN=ASI1 /DB_XREF=GI:6323766 /SEG=NC_001145:+505332,507206 /DEF=Putative integral membrane E3 ubiquitin ligase; genetic interactions suggest a role in negative regulation of amino acid uptake /NOTE=Asi1p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IGI,ISS] [pmid 11454748]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence IGI,ISS] [pmid 11454748]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence IGI] [pmid 11454748] --- --- --- --- --- S0004725 // span:76-98,110-132,147-166,237-255,275-294 // numtm:5 S0004725 // ASI1 SGDID:S0004725, Chr XIII from 505332-507206, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021974 // cdna:GeneFinder chromosome:SGD1:XIII:506328:507206:1 // ensembl // 11 // --- /// GENSCAN00000018813 // cdna:Genscan chromosome:SGD1:XIII:506571:507206:1 // ensembl // 11 // --- /// YMR119W // cdna:known chromosome:SGD1:XIII:505332:507206:1 gene:YMR119W // ensembl // 11 // --- YMR119W-A // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene 1.03672400580061 -1.61259501020654 1.2635423065603 -1.17169317170055 1.02049000634821 Max fold change below threshold 4 1.61259501020654 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779654_s_at YMR321C.S1 Hypothetical protein /// S-adenosylmethionine-homocysteine methyltransferase, functions along with Mht1p in the conversion of S-adenosylmethionine (AdoMet) to methionine to control the methionine/AdoMet ratio 1.61243356331977 314.056396484375 417.827880859375 SAM4 96 // sulfur amino acid metabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8898 // homocysteine S-methyltransferase activity // inferred from direct assay 401.763275146484 355.789581298828 272.323211669922 433.892486572266 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR321C /GEN=FET4 /DB_XREF=GI:6323983 /SEG=NC_001145:-917577,917894 /DEF=Hypothetical ORF /NOTE=Ymr321cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004940 // YMR321C SGDID:S0004940, Chr XIII from 917894-917577, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0006194 // SAM4 SGDID:S0006194, Chr XVI from 25087-26064, Verified ORF // sgd // 11 // --- /// GENSCAN00000018987 // cdna:Genscan chromosome:SGD1:XIII:917577:917891:-1 // ensembl // 11 // --- /// GENEFINDER00000021955 // cdna:GeneFinder chromosome:SGD1:XIII:917577:919077:-1 // ensembl // 9 // --- /// GENSCAN00000016973 // cdna:Genscan chromosome:SGD1:XVI:25087:26064:1 // ensembl // 11 // --- /// GENEFINDER00000020818 // cdna:GeneFinder chromosome:SGD1:XVI:25087:26064:1 // ensembl // 11 // --- /// YMR321C // cdna:known chromosome:SGD1:XIII:917577:917894:-1 gene:YMR321C // ensembl // 11 // --- /// YPL273W // cdna:known chromosome:SGD1:XVI:25087:26064:1 gene:YPL273W // ensembl // 11 // --- --- No cerevisiae_gene 1.61243356331977 -1.12921596433439 -1.5262851886684 -1.47531777655977 1.079970503561 Max fold change below threshold 4 1.61243356331977 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779167_at YGL014W.S1 Member of the PUF protein family, which is defined by the presence of Pumilio homology domains that confer RNA binding activity; preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors 1.61239146991384 770.882781982422 1005.42123413086 PUF4 288 // mRNA catabolism, deadenylylation-dependent decay // inferred from genetic interaction /// 1308 // loss of chromatin silencing during replicative cell aging // inferred from genetic interaction /// 1308 // loss of chromatin silencing during replicative cell aging // inferred from mutant phenotype /// 8104 // protein localization // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 3729 // mRNA binding // inferred from sequence similarity 944.192687988281 710.186340332031 831.579223632813 1066.64978027344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL014W /GEN=PUF4 /DB_XREF=GI:6321424 /SEG=NC_001139:+466144,468810 /DEF=member of the PUF protein family /NOTE=Puf4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: mRNA binding [goid GO:0003729] [evidence ISS] [pmid 11101532]; go_process: loss of chromatin silencing during replicative cell aging [goid GO:0001308] [evidence IGI,IMP] [pmid 9150138]; go_process: mRNA catabolism, deadenylation-dependent [goid GO:0000288] [evidence IGI] [pmid 11101532]; go_process: protein targeting [goid GO:0006605] [evidence IMP] [pmid 9150138] --- --- --- --- --- --- S0002982 // PUF4 SGDID:S0002982, Chr VII from 466146-468812, Verified ORF // sgd // 11 // --- /// GENSCAN00000019330 // cdna:Genscan chromosome:SGD1:VII:466146:468812:1 // ensembl // 11 // --- /// GENEFINDER00000021760 // cdna:GeneFinder chromosome:SGD1:VII:466146:468812:1 // ensembl // 11 // --- /// YGL014W // cdna:known chromosome:SGD1:VII:466146:468812:1 gene:YGL014W // ensembl // 11 // --- --- No cerevisiae_gene -1.61239146991384 -1.32949992750754 -1.07013490850764 -1.13542120961549 1.12969502289418 Max fold change below threshold 4 1.61239146991384 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777571_at YGR102C.S1 Hypothetical protein 1.61227216168134 1330.134765625 1203.29479980469 --- --- 5739 // mitochondrion // inferred from direct assay --- 1181.44763183594 1157.93835449219 1502.33117675781 1225.14196777344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR102C /GEN=PCP1 /DB_XREF=GI:6321539 /SEG=NC_001139:-694586,695137 /DEF=Hypothetical ORF /NOTE=Ygr102cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003334 // YGR102C SGDID:S0003334, Chr VII from 695139-694588, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000019419 // cdna:Genscan chromosome:SGD1:VII:694588:695139:-1 // ensembl // 10 // --- /// GENEFINDER00000021603 // cdna:GeneFinder chromosome:SGD1:VII:694588:695139:-1 // ensembl // 10 // --- /// YGR102C // cdna:known chromosome:SGD1:VII:694588:695139:-1 gene:YGR102C // ensembl // 10 // --- --- No cerevisiae_gene -1.61227216168134 -1.02030270199838 1.20866496893759 1.27160200441828 1.03698372637101 Max fold change below threshold 4 1.61227216168134 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776490_s_at YER138W-A.S1 Identified by expression profiling and mass spectrometry /// Similar to TyB and TyA 1.61209785367515 2007.33709716797 1400.08880615234 --- --- --- --- 1528.07080078125 2463.39965820313 1551.27453613281 1272.10681152344 0.00195312988944352 0.00195312988944352 0.00195312988944352 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER138W-A /GEN=GDI1 /DB_XREF=GI:6320986 /SEG=NC_001137:+449470,449574 /DEF=Similar to TyB and TyA /NOTE=Yer138w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- K00950 // Saccharomyces cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#5. // gb // 0 // chr14:726656-726767(-) /// S0007239 // YER138W-A SGDID:S0007239, Chr V from 449470-449574, Uncharacterized ORF // sgd // 0 // chr14:726662-726766(-) /// YBL107W-A // cdna:known chromosome:SGD1:II:9268:9372:1 gene:YBL107W-A // ensembl // 0 // chr14:726661-726766(-) /// YER138W-A // cdna:known chromosome:SGD1:V:449470:449574:1 gene:YER138W-A // ensembl // 0 // chr14:726662-726766(-) /// K00951 // S.cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#9. // gb // 0 // chr14:726651-726768(-) /// S0007239 // YER138W-A SGDID:S0007239, Chr V from 449470-449574, Uncharacterized ORF // sgd // 0 // chr12:976305-976409(-) /// YER138W-A // cdna:known chromosome:SGD1:V:449470:449574:1 gene:YER138W-A // ensembl // 0 // chr12:976305-976409(-) /// K00951 // S.cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#9. // gb // 0 // chr12:976294-976411(-) /// YBL107W-A // cdna:known chromosome:SGD1:II:9268:9372:1 gene:YBL107W-A // ensembl // 0 // chr12:976304-976409(-) /// K00950 // Saccharomyces cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#5. // gb // 0 // chr12:976299-976410(-) /// S0007239 // YER138W-A SGDID:S0007239, Chr V from 449470-449574, Uncharacterized ORF // sgd // 0 // chr5:135660-135764(-) /// YER138W-A // cdna:known chromosome:SGD1:V:449470:449574:1 gene:YER138W-A // ensembl // 0 // chr5:135660-135764(-) /// YBL107W-A // cdna:known chromosome:SGD1:II:9268:9372:1 gene:YBL107W-A // ensembl // 0 // chr5:135659-135764(-) /// K00950 // Saccharomyces cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#5. // gb // 0 // chr5:135654-135766(-) /// K00951 // S.cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#9. // gb // 0 // chr5:135649-135765(-) /// YER138W-A // cdna:known chromosome:SGD1:V:449470:449574:1 gene:YER138W-A // ensembl // 0 // chr7:568794-568898(-) /// K00951 // S.cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#9. // gb // 0 // chr7:568783-568900(-) /// YBL107W-A // cdna:known chromosome:SGD1:II:9268:9372:1 gene:YBL107W-A // ensembl // 0 // chr7:568793-568898(-) /// S0007239 // YER138W-A SGDID:S0007239, Chr V from 449470-449574, Uncharacterized ORF // sgd // 0 // chr7:568794-568898(-) /// K00950 // Saccharomyces cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#5. // gb // 0 // chr7:568788-568899(-) /// S0028857 // YOR192C-C SGDID:S0028857, Chr XV from 704224-703988, reverse complement, Uncharacterized ORF // sgd // 0 // chr7:111071-574529(-) /// YOR192C-C // cdna:known chromosome:SGD1:XV:703988:704224:-1 gene:YOR192C-C // ensembl // 0 // chr7:111071-574529(-) /// S0007239 // YER138W-A SGDID:S0007239, Chr V from 449470-449574, Uncharacterized ORF // sgd // 0 // chr7:574423-574526(-) /// GENEFINDER00000020499 // cdna:GeneFinder chromosome:SGD1:XIV:566383:567819:-1 // ensembl // 0 // chr7:573093-574529(-) /// GENSCAN00000020008 // cdna:Genscan chromosome:SGD1:XIV:566383:567816:-1 // ensembl // 0 // chr7:573093-574526(-) /// GENEFINDER00000020499 // cdna:GeneFinder chromosome:SGD1:XIV:566383:567819:-1 // ensembl // 0 // chr3:84981-86417(+) /// K00949 // S.cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#3. // gb // 0 // chr3:84982-85095(+) /// GENSCAN00000020008 // cdna:Genscan chromosome:SGD1:XIV:566383:567816:-1 // ensembl // 0 // chr3:84984-86417(+) /// YER138W-A // cdna:known chromosome:SGD1:V:449470:449574:1 gene:YER138W-A // ensembl // 0 // chr3:84984-85087(+) /// S0028857 // YOR192C-C SGDID:S0028857, Chr XV from 704224-703988, reverse complement, Uncharacterized ORF // sgd // 0 // chr16:62560-437040(+) /// YBL107W-A // cdna:known chromosome:SGD1:II:9268:9372:1 gene:YBL107W-A // ensembl // 0 // chr16:62563-62668(+) /// K00950 // Saccharomyces cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#5. // gb // 0 // chr16:62562-62673(+) /// YOR192C-C // cdna:known chromosome:SGD1:XV:703988:704224:-1 gene:YOR192C-C // ensembl // 0 // chr16:62560-437040(+) /// YER138W-A // cdna:known chromosome:SGD1:V:449470:449574:1 gene:YER138W-A // ensembl // 0 // chr16:62563-62667(+) /// K00951 // S.cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#9. // gb // 0 // chr16:62561-62678(+) /// S0007239 // YER138W-A SGDID:S0007239, Chr V from 449470-449574, Uncharacterized ORF // sgd // 0 // chr16:62563-62667(+) /// K00950 // Saccharomyces cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#5. // gb // 0 // chr15:970452-970564(+) /// GENEFINDER00000020499 // cdna:GeneFinder chromosome:SGD1:XIV:566383:567819:-1 // ensembl // 0 // chr15:970451-971887(+) /// S0007239 // YER138W-A SGDID:S0007239, Chr V from 449470-449574, Uncharacterized ORF // sgd // 0 // chr15:970454-970558(+) /// YBL107W-A // cdna:known chromosome:SGD1:II:9268:9372:1 gene:YBL107W-A // ensembl // 0 // chr15:970454-970559(+) /// YER138W-A // cdna:known chromosome:SGD1:V:449470:449574:1 gene:YER138W-A // ensembl // 0 // chr15:970454-970558(+) /// K00951 // S.cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#9. // gb // 0 // chr15:970453-970569(+) /// GENSCAN00000020008 // cdna:Genscan chromosome:SGD1:XIV:566383:567816:-1 // ensembl // 0 // chr15:970454-971887(+) /// K00950 // Saccharomyces cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#5. // gb // 0 // chr15:976079-976191(+) /// S0007239 // YER138W-A SGDID:S0007239, Chr V from 449470-449574, Uncharacterized ORF // sgd // 0 // chr15:976081-976185(+) /// YBL107W-A // cdna:known chromosome:SGD1:II:9268:9372:1 gene:YBL107W-A // ensembl // 0 // chr15:976081-976186(+) /// YER138W-A // cdna:known chromosome:SGD1:V:449470:449574:1 gene:YER138W-A // ensembl // 0 // chr15:976081-976185(+) /// K00951 // S.cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#9. // gb // 0 // chr15:976080-976196(+) /// K00950 // Saccharomyces cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#5. // gb // 0 // chr4:1352804-1352916(+) /// S0007239 // YER138W-A SGDID:S0007239, Chr V from 449470-449574, Uncharacterized ORF // sgd // 0 // chr4:1352806-1352910(+) /// K00951 // S.cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#9. // gb // 0 // chr4:1352805-1352921(+) /// YER138W-A // cdna:known chromosome:SGD1:V:449470:449574:1 gene:YER138W-A // ensembl // 0 // chr4:1352806-1352910(+) /// YBL107W-A // cdna:known chromosome:SGD1:II:9268:9372:1 gene:YBL107W-A // ensembl // 0 // chr4:1352806-1352911(+) /// S0007239 // YER138W-A SGDID:S0007239, Chr V from 449470-449574, Uncharacterized ORF // sgd // 0 // chr13:768721-768825(+) /// YBL107W-A // cdna:known chromosome:SGD1:II:9268:9372:1 gene:YBL107W-A // ensembl // 0 // chr13:768721-768826(+) /// K00950 // Saccharomyces cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#5. // gb // 0 // chr13:768719-768831(+) /// K00951 // S.cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#9. // gb // 0 // chr13:768720-768836(+) /// YER138W-A // cdna:known chromosome:SGD1:V:449470:449574:1 gene:YER138W-A // ensembl // 0 // chr13:768721-768825(+) /// YBL107W-A // cdna:known chromosome:SGD1:II:9268:9372:1 gene:YBL107W-A // ensembl // 0 // chr12:941362-941467(+) /// K00950 // Saccharomyces cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#5. // gb // 0 // chr12:941361-941473(+) /// GENEFINDER00000020499 // cdna:GeneFinder chromosome:SGD1:XIV:566383:567819:-1 // ensembl // 0 // chr12:941359-942795(+) /// K00949 // S.cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#3. // gb // 0 // chr12:941360-941474(+) /// S0007239 // YER138W-A SGDID:S0007239, Chr V from 449470-449574, Uncharacterized ORF // sgd // 0 // chr12:941362-941465(+) /// GENSCAN00000020008 // cdna:Genscan chromosome:SGD1:XIV:566383:567816:-1 // ensembl // 0 // chr12:941362-942795(+) /// YER138W-A // cdna:known chromosome:SGD1:V:449470:449574:1 gene:YER138W-A // ensembl // 0 // chr12:941362-941465(+) /// K00950 // Saccharomyces cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#5. // gb // 0 // chr12:946988-947100(+) /// K00949 // S.cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#3. // gb // 0 // chr12:946987-947101(+) /// S0007239 // YER138W-A SGDID:S0007239, Chr V from 449470-449574, Uncharacterized ORF // sgd // 0 // chr12:946989-947092(+) /// YER138W-A // cdna:known chromosome:SGD1:V:449470:449574:1 gene:YER138W-A // ensembl // 0 // chr12:946989-947092(+) /// YBL107W-A // cdna:known chromosome:SGD1:II:9268:9372:1 gene:YBL107W-A // ensembl // 0 // chr5:449469-449573(+) /// S0007239 // YER138W-A SGDID:S0007239, Chr V from 449470-449574, Uncharacterized ORF // sgd // 0 // chr5:449469-449574(+) /// K00951 // S.cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#9. // gb // 0 // chr5:449468-449584(+) /// YER138W-A // cdna:known chromosome:SGD1:V:449470:449574:1 gene:YER138W-A // ensembl // 0 // chr5:449469-449574(+) /// S0028857 // YOR192C-C SGDID:S0028857, Chr XV from 704224-703988, reverse complement, Uncharacterized ORF // sgd // 0 // chr7:811620-931325(+) /// S0007239 // YER138W-A SGDID:S0007239, Chr V from 449470-449574, Uncharacterized ORF // sgd // 0 // chr7:811623-811726(+) /// K00950 // Saccharomyces cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#5. // gb // 0 // chr7:811622-811735(+) /// K00949 // S.cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#3. // gb // 0 // chr7:811621-811734(+) /// YOR192C-C // cdna:known chromosome:SGD1:XV:703988:704224:-1 gene:YOR192C-C // ensembl // 0 // chr7:811620-931325(+) /// GENEFINDER00000020499 // cdna:GeneFinder chromosome:SGD1:XIV:566383:567819:-1 // ensembl // 0 // chr7:811620-813056(+) /// YER138W-A // cdna:known chromosome:SGD1:V:449470:449574:1 gene:YER138W-A // ensembl // 0 // chr7:811623-811726(+) /// GENSCAN00000020008 // cdna:Genscan chromosome:SGD1:XIV:566383:567816:-1 // ensembl // 0 // chr7:811623-813056(+) /// S0007239 // YER138W-A SGDID:S0007239, Chr V from 449470-449574, Uncharacterized ORF // sgd // 0 // chr7:817250-817353(+) /// K00949 // S.cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#3. // gb // 0 // chr7:817248-817362(+) /// YER138W-A // cdna:known chromosome:SGD1:V:449470:449574:1 gene:YER138W-A // ensembl // 0 // chr7:817250-817353(+) /// K00949 // S.cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#3. // gb // 0 // chr10:537969-538083(+) /// S0007239 // YER138W-A SGDID:S0007239, Chr V from 449470-449574, Uncharacterized ORF // sgd // 0 // chr10:537971-538074(+) /// K00950 // Saccharomyces cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#5. // gb // 0 // chr10:537970-538082(+) /// YER138W-A // cdna:known chromosome:SGD1:V:449470:449574:1 gene:YER138W-A // ensembl // 0 // chr6:143709-143812(+) /// K00951 // S.cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#9. // gb // 0 // chr6:143707-143893(+) /// K00949 // S.cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#3. // gb // 0 // chr6:143707-143820(+) /// K00950 // Saccharomyces cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#5. // gb // 0 // chr6:143708-143821(+) /// YER138W-A // cdna:known chromosome:SGD1:V:449470:449574:1 gene:YER138W-A // ensembl // 0 // chr6:138082-138185(+) /// GENEFINDER00000020499 // cdna:GeneFinder chromosome:SGD1:XIV:566383:567819:-1 // ensembl // 0 // chr6:138079-139515(+) /// K00949 // S.cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#3. // gb // 0 // chr6:138080-138193(+) /// GENSCAN00000020008 // cdna:Genscan chromosome:SGD1:XIV:566383:567816:-1 // ensembl // 0 // chr6:138082-139515(+) /// K00950 // Saccharomyces cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#5. // gb // 0 // chr6:138081-138194(+) /// K00949 // S.cerevisiae transposable element Ty1 mRNA, 3' end, clone cty#3. // gb // 0 // chr3:90609-90723(+) /// S0007239 // YER138W-A SGDID:S0007239, Chr V from 449470-449574, Uncharacterized ORF // sgd // 0 // chr3:90611-90714(+) /// YER138W-A // cdna:known chromosome:SGD1:V:449470:449574:1 gene:YER138W-A // ensembl // 0 // chr3:90611-90714(+) S0001322 // sgd // 8 // Cross Hyb Matching Probes /// AY169693 // gb // 8 // Cross Hyb Matching Probes /// YIL060W // ensembl // 8 // Cross Hyb Matching Probes /// YHR145C // ensembl // 8 // Cross Hyb Matching Probes /// S0002774 // sgd // 8 // Negative Strand Matching Probes /// YDR366C // ensembl // 8 // Negative Strand Matching Probes No cerevisiae_gene -1.27034659841126 1.61209785367515 -1.52503562246233 1.01518498706977 -1.20121265521036 Max fold change below threshold 4 1.61209785367515 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770517_at YPL034W.S1 Hypothetical protein 1.61209162809961 69.1140422821045 48.4064617156982 --- --- --- --- 52.1795463562012 54.1098747253418 84.1182098388672 44.6333770751953 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL034W /GEN=PMA2 /DB_XREF=GI:6325222 /SEG=NC_001148:+486708,487205 /DEF=Hypothetical ORF /NOTE=Ypl034wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005955 // YPL034W SGDID:S0005955, Chr XVI from 486710-487207, Uncharacterized ORF // sgd // 11 // --- /// YPL034W // cdna:known chromosome:SGD1:XVI:486710:487207:1 gene:YPL034W // ensembl // 11 // --- YPL035C // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene -1.00936342508467 1.03699396610241 -1.49919601504922 1.61209162809961 -1.16907009452349 Max fold change below threshold 4 1.61209162809961 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773917_at YDR511W.S1 Protein of the mitochondrial intermembrane space, required for acetate utilization and gluconeogenesis; has orthologs in higher eukaryotes 1.61209101864948 539.320434570313 429.524047851563 ACN9 6094 // gluconeogenesis // inferred from mutant phenotype /// 15978 // carbon utilization by utilization of organic compounds // inferred from mutant phenotype 5758 // mitochondrial intermembrane space // inferred from direct assay --- 400.985870361328 521.28955078125 557.351318359375 458.062225341797 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR511W /GEN=ACN9 /DB_XREF=GI:6320719 /SEG=NC_001136:+1470005,1470406 /DEF=Protein of the mitochondrial intermembrane space, required for acetate utilization and gluconeogenesis; has orthologs in higher eukaryotes /NOTE=Acn9p; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence IDA] [pmid 10103055]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: carbon utilization by utilization of organic compounds [goid GO:0015978] [evidence IMP] [pmid 10103055]; go_process: gluconeogenesis [goid GO:0006094] [evidence IMP] [pmid 10103055] --- --- --- --- --- --- S0002919 // ACN9 SGDID:S0002919, Chr IV from 1470007-1470408, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023841 // cdna:GeneFinder chromosome:SGD1:IV:1470007:1470408:1 // ensembl // 11 // --- /// GENSCAN00000025498 // cdna:Genscan chromosome:SGD1:IV:1470007:1470408:1 // ensembl // 11 // --- /// YDR511W // cdna:known chromosome:SGD1:IV:1470007:1470408:1 gene:YDR511W // ensembl // 11 // --- --- No cerevisiae_gene 1.20654111399174 1.30001974960244 1.61209101864948 1.38995251343182 1.1423400653221 Max fold change below threshold 4 1.61209101864948 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777589_at YML004C.S1 Monomeric glyoxalase I, catalyzes the detoxification of methylglyoxal (a by-product of glycolysis) via condensation with glutathione to produce S-D-lactoylglutathione; expression regulated by methylglyoxal levels and osmotic stress 1.61208461043714 6253.40063476563 5116.90625 GLO1 6749 // glutathione metabolism // inferred from genetic interaction /// 19243 // methylglyoxal catabolism // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4462 // lactoylglutathione lyase activity // inferred from genetic interaction 5668.29296875 7741.40673828125 4765.39453125 4565.51953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML004C /GEN=GLO1 /DB_XREF=GI:6323639 /SEG=NC_001145:-261705,262685 /DEF=Regulated by HOG (high osmolarity glycerol)-MAP (mitogen-activated protein) kinase pathway in osmotic stress response /NOTE=Glo1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: lactoylglutathione lyase activity [goid GO:0004462] [evidence IGI] [pmid 8824231]; go_process: glutathione metabolism [goid GO:0006749] [evidence IGI] [pmid 8824231] --- --- --- --- --- --- S0004463 // GLO1 SGDID:S0004463, Chr XIII from 262685-261705, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018715 // cdna:Genscan chromosome:SGD1:XIII:261705:262685:-1 // ensembl // 11 // --- /// GENEFINDER00000022102 // cdna:GeneFinder chromosome:SGD1:XIII:261705:262685:-1 // ensembl // 11 // --- /// YML004C // cdna:known chromosome:SGD1:XIII:261705:262685:-1 gene:YML004C // ensembl // 11 // --- --- No cerevisiae_gene -1.61208461043714 1.36573864141472 -1.02002779610066 -1.18946981862238 -1.24154390972413 Max fold change below threshold 4 1.61208461043714 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775090_at SPCC320.04c.S1 --- 1.61192439719287 --- --- --- --- 8.31544589996338 10.1872873306274 6.2536940574646 6.5770435333252 0.398925989866257 0.334473013877869 0.129638999700546 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC320.04c /DEF=conserved eukaryotic protein --- --- --- --- --- --- SPCC320.04c // |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.37896325077123 1.22510415595059 -1.61192439719287 -1.32968543448937 -1.26431364758799 Max fold change below threshold 4 1.61192439719287 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1770250_at YJR121W.S1 Beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis 1.61187290795309 6570.34008789063 4356.62670898438 ATP2 1321 // age-dependent general metabolic decline during replicative cell aging // inferred from mutant phenotype /// 15986 // ATP synthesis coupled proton transport // inferred from mutant phenotype /// 15986 // ATP synthesis coupled proton transport // inferred from sequence similarity 5625 // soluble fraction // inferred from direct assay /// 5754 // proton-transporting ATP synthase, catalytic core (sensu Eukaryota) // inferred from mutant phenotype 46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // inferred from mutant phenotype /// 46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // inferred from sequence similarity 4723.55419921875 7613.76904296875 5526.9111328125 3989.69921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR121W /GEN=ATP2 /DB_XREF=GI:6322581 /SEG=NC_001142:+647522,649057 /DEF=Beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis /NOTE=Atp2p; go_component: proton-transporting ATP synthase, catalytic core (sensu Eukarya) [goid GO:0005754] [evidence IMP] [pmid 6225776]; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 11746603]; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism [goid GO:0046933] [evidence IMP,ISS] [pmid 6225776]; go_process: ATP synthesis coupled proton transport [goid GO:0015986] [evidence IMP,ISS] [pmid 6225776]; go_process: age-dependent general metabolic decline during replicative cell aging [goid GO:0001321] [evidence IMP] [pmid 12242224] --- --- --- --- --- --- S0003882 // ATP2 SGDID:S0003882, Chr X from 647522-649057, Verified ORF // sgd // 11 // --- /// GENSCAN00000024227 // cdna:Genscan chromosome:SGD1:X:647522:649057:1 // ensembl // 11 // --- /// GENEFINDER00000024437 // cdna:GeneFinder chromosome:SGD1:X:647522:649057:1 // ensembl // 11 // --- /// YJR121W // cdna:known chromosome:SGD1:X:647522:649057:1 gene:YJR121W // ensembl // 11 // --- --- No cerevisiae_gene -1.03502739059303 1.61187290795309 -1.05537805014951 1.17007467252659 -1.1839374198987 Max fold change below threshold 4 1.61187290795309 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773193_at SPCC24B10.02c.S1 --- 1.61147981031597 --- --- --- --- 4.95893239974976 3.10463333129883 4.15670871734619 7.02365684509277 0.24609400331974 0.665526986122131 0.665526986122131 0.0805663987994194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC24B10.02c /DEF=NADNADH kinase --- --- --- --- --- --- SPCC24B10.02c // |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No 1.37800817047906 -1.59726829888642 -1.61147981031597 -1.19299492385787 1.41636470895373 Max fold change below threshold 4 1.61147981031597 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778125_at YEL025C.S1 SWI/SNF and RSC interacting protein 1 1.61085696858798 226.505729675293 365.099365234375 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 348.017517089844 216.044952392578 236.966506958008 382.181213378906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL025C /GEN=SNU13 /DB_XREF=GI:6320810 /SEG=NC_001137:-102581,106147 /DEF=SWI/SNF and RSC interacting protein 1 /NOTE=Yel025cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.Thanscriptional regulator IclR, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Thanscriptional regulator IclR, N-terminal domain // 6.30000019073486 S0000751 // span:72-94 // numtm:1 S0000751 // YEL025C SGDID:S0000751, Chr V from 106147-102581, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016782 // cdna:Genscan chromosome:SGD1:V:102581:106147:-1 // ensembl // 11 // --- /// YEL025C // cdna:known chromosome:SGD1:V:102581:106147:-1 gene:YEL025C // ensembl // 11 // --- --- No cerevisiae_gene 1.03540553627647 -1.61085696858798 1.12220859328237 -1.46863589102706 1.09816659970091 Max fold change below threshold 4 1.61085696858798 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769456_at YKL061W.S1 Hypothetical protein 1.61057171558505 154.495620727539 123.007682800293 --- --- 5768 // endosome // inferred from direct assay --- 107.922897338867 157.402313232422 151.588928222656 138.092468261719 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL061W /GEN=MSN4 /DB_XREF=GI:6322789 /SEG=NC_001143:+325416,325757 /DEF=Hypothetical ORF /NOTE=Ykl061wp; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001544 // YKL061W SGDID:S0001544, Chr XI from 325416-325757, Uncharacterized ORF // sgd // 11 // --- /// YKL061W // cdna:known chromosome:SGD1:XI:325416:325757:1 gene:YKL061W // ensembl // 11 // --- --- No cerevisiae_gene -1.12530266184916 1.45847004772485 1.61057171558505 1.40460395301177 1.27954745162301 Max fold change below threshold 4 1.61057171558505 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772255_at YKL067W.S1 Nucleoside diphosphate kinase, catalyzes the phosphorylation of nucleoside diphosphates into the corresponding triphosphates for nucleic acid biosynthesis 1.61000149540885 3360.92687988281 2783.79736328125 YNK1 6164 // purine nucleotide biosynthesis // traceable author statement /// 6259 // DNA metabolism // inferred from direct assay /// 9117 // nucleotide metabolism // traceable author statement /// 16070 // RNA metabolism // inferred from direct assay 5758 // mitochondrial intermembrane space // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 4550 // nucleoside-diphosphate kinase activity // inferred from sequence similarity 3050.36303710938 3502.34448242188 3219.50927734375 2517.23168945313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL067W /GEN=YNK1 /DB_XREF=GI:6322783 /SEG=NC_001143:+314457,314918 /DEF=catalyzes the phosphorylation of nucleoside diphosphates into the corresponding triphosphates for nucleic acid biosynthesis. /NOTE=Ynk1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 12472466]; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence IDA] [pmid 12472466]; go_function: nucleoside-diphosphate kinase activity [goid GO:0004550] [evidence ISS] [pmid 7499258]; go_process: DNA metabolism [goid GO:0006259] [evidence IDA] [pmid 1659321]; go_process: RNA metabolism [goid GO:0016070] [evidence IDA] [pmid 1659321]; go_process: nucleotide metabolism [goid GO:0009117] [evidence TAS] [pmid 12472466]; go_process: purine nucleotide biosynthesis [goid GO:0006164] [evidence TAS] [pmid 11035032] --- --- --- --- --- --- S0001550 // YNK1 SGDID:S0001550, Chr XI from 314457-314918, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023040 // cdna:GeneFinder chromosome:SGD1:XI:314457:314918:1 // ensembl // 11 // --- /// YKL067W // cdna:known chromosome:SGD1:XI:314457:314918:1 gene:YKL067W // ensembl // 11 // --- GENSCAN00000018368 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.61000149540885 1.14817300098837 -1.09930952031736 1.05545118340887 -1.21179272050721 Max fold change below threshold 4 1.61000149540885 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773653_at YDR463W.S1 Transcription factor, activated by proteolytic processing in response to signals from the SPS sensor system for external amino acids; activates transcription of amino acid permease genes and may have a role in tRNA processing 1.60974090128259 909.399780273438 1074.20159912109 STP1 6388 // tRNA splicing // inferred from mutant phenotype /// 45941 // positive regulation of transcription // inferred from direct assay /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence similarity /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 3700 // transcription factor activity // inferred from direct assay /// 3704 // specific RNA polymerase II transcription factor activity // inferred from genetic interaction /// 3704 // specific RNA polymerase II transcription factor activity // inferred from sequence similarity /// 3704 // specific RNA polymerase II transcription factor activity // inferred from mutant phenotype 1015.548828125 630.877197265625 1187.92236328125 1132.85437011719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR463W /GEN=STP1 /DB_XREF=GI:37362636 /SEG=NC_001136:+1386804,1388363 /DEF=Transcription factor, activated by proteolytic processing in response to signals from the SPS sensor system for external amino acids; activates transcription of amino acid permease genes and may have a role in tRNA processing /NOTE=Stp1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 1588961]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IGI,IMP,ISS] [pmid 10648791]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IGI,IMP,ISS] [pmid 10648791]; go_process: tRNA splicing [goid GO:0006388] [evidence IMP] [pmid 1588961] --- --- --- --- --- --- S0002871 // STP1 SGDID:S0002871, Chr IV from 1386806-1388365, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023675 // cdna:GeneFinder chromosome:SGD1:IV:1386806:1388617:1 // ensembl // 10 // --- /// GENSCAN00000025463 // cdna:Genscan chromosome:SGD1:IV:1386806:1388365:1 // ensembl // 11 // --- /// YDR463W // cdna:known chromosome:SGD1:IV:1386806:1388365:1 gene:YDR463W // ensembl // 11 // --- --- No cerevisiae_gene 1.19195009337239 -1.60974090128259 1.16350324832055 1.16973436469274 1.115509504559 Max fold change below threshold 4 1.60974090128259 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773429_at YDL137W.S1 ADP-ribosylation factor, GTPase of the Ras superfamily involved in regulation of coated formation vesicles in intracellular trafficking within the Golgi; functionally interchangeable with Arf1p 1.60959436287297 5080.71264648438 3499.21215820313 ARF2 6888 // ER to Golgi transport // traceable author statement /// 6891 // intra-Golgi transport // traceable author statement 5798 // Golgi vesicle // traceable author statement /// 5829 // cytosol // traceable author statement 3924 // GTPase activity // inferred from sequence similarity 3771.8681640625 6071.177734375 4090.24755859375 3226.55615234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL137W /GEN=ARF2 /DB_XREF=GI:6320064 /SEG=NC_001136:+216529,217074 /DEF=ADP-ribosylation factor 2 /NOTE=Arf2p; go_component: Golgi vesicle [goid GO:0005798] [evidence TAS] [pmid 9705267]; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 9705267]; go_function: GTPase activity [goid GO:0003924] [evidence ISS] [pmid 2123295]; go_process: ER to Golgi transport [goid GO:0006888] [evidence TAS] [pmid 9705267]; go_process: intra-Golgi transport [goid GO:0006891] [evidence TAS] [pmid 9705267] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 3.5 --- S0002296 // ARF2 SGDID:S0002296, Chr IV from 216529-217074, Verified ORF // sgd // 11 // --- /// GENSCAN00000024997 // cdna:Genscan chromosome:SGD1:IV:216529:217074:1 // ensembl // 11 // --- /// YDL137W // cdna:known chromosome:SGD1:IV:216529:217074:1 gene:YDL137W // ensembl // 11 // --- GENEFINDER00000023655 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.43238465739099 1.60959436287297 -1.16217508032018 1.08440894026061 -1.16900744508123 Max fold change below threshold 4 1.60959436287297 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778928_s_at YBR181C.S1 Protein component of the small (40S) ribosomal subunit; identical to Rps6Bp and has similarity to rat S6 ribosomal protein /// Protein component of the small (40S) ribosomal subunit; identical to Rps6Ap and has similarity to rat S6 ribosomal protein 1.60910696587846 4157.11499023438 5675.91259765625 RPS6A /// RPS6B 6412 // protein biosynthesis // traceable author statement 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement /// 5737 // cytoplasm // inferred from direct assay 3735 // structural constituent of ribosome // traceable author statement 6428.1572265625 4238.271484375 4075.95849609375 4923.66796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR181C /GEN=RPS6B /DB_XREF=GI:6319658 /SEG=NC_001134:-591669,592731 /DEF=Protein component of the small (40S) ribosomal subunit; identical to Rps6Ap and has similarity to rat S6 ribosomal protein /NOTE=Rps6bp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0000385 // RPS6B SGDID:S0000385, Chr II from 592769-592764,592411-591707, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0006011 // RPS6A SGDID:S0006011, Chr XVI from 378392-378387,377992-377288, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000021286 // cdna:Genscan chromosome:SGD1:II:591707:592231:-1 // ensembl // 10 // --- /// GENEFINDER00000022241 // cdna:GeneFinder chromosome:SGD1:II:591707:592231:-1 // ensembl // 10 // --- /// GENSCAN00000017121 // cdna:Genscan chromosome:SGD1:XVI:377288:377812:-1 // ensembl // 10 // --- /// GENEFINDER00000020809 // cdna:GeneFinder chromosome:SGD1:XVI:377288:377812:-1 // ensembl // 10 // --- /// YBR181C // cdna:known chromosome:SGD1:II:591707:592769:-1 gene:YBR181C // ensembl // 11 // --- /// YPL090C // cdna:known chromosome:SGD1:XVI:377288:378392:-1 gene:YPL090C // ensembl // 11 // --- --- No cerevisiae_gene -1.04850264095535 -1.51669312602103 -1.60910696587846 -1.57709094259007 -1.30556269581161 Max fold change below threshold 4 1.60910696587846 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774495_at YMR250W.S1 Glutamate decarboxylase, converts glutamate into gamma-aminobutyric acid (GABA) during glutamate catabolism; involved in response to oxidative stress 1.60904612993538 4269.88305664063 3548.15295410156 GAD1 6538 // glutamate catabolism // inferred from physical interaction /// 6538 // glutamate catabolism // inferred from sequence similarity /// 6979 // response to oxidative stress // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4351 // glutamate decarboxylase activity // inferred from physical interaction /// 4351 // glutamate decarboxylase activity // inferred from sequence similarity 3858.068359375 4378.13330078125 4161.6328125 3238.23754882813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR250W /GEN=GAD1 /DB_XREF=GI:6323905 /SEG=NC_001145:+770800,772557 /DEF=Glutamate decarboxylase, converts glutamate into gamma-aminobutyric acid (GABA) during glutamate catabolism; involved in response to oxidative stress /NOTE=Gad1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: glutamate decarboxylase activity [goid GO:0004351] [evidence IPI,ISS] [pmid 11031268]; go_process: glutamate catabolism [goid GO:0006538] [evidence IPI,ISS] [pmid 11031268]; go_process: response to oxidative stress [goid GO:0006979] [evidence IMP] [pmid 11031268] --- --- --- --- --- --- S0004862 // GAD1 SGDID:S0004862, Chr XIII from 770800-772557, Verified ORF // sgd // 11 // --- /// GENSCAN00000018925 // cdna:Genscan chromosome:SGD1:XIII:770800:772557:1 // ensembl // 11 // --- /// GENEFINDER00000021803 // cdna:GeneFinder chromosome:SGD1:XIII:770800:772557:1 // ensembl // 11 // --- /// YMR250W // cdna:known chromosome:SGD1:XIII:770800:772557:1 gene:YMR250W // ensembl // 11 // --- --- No cerevisiae_gene -1.60904612993538 1.13479930705284 1.0428423767966 1.07868301565662 -1.19140992629499 Max fold change below threshold 4 1.60904612993538 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777362_at YOR023C.S1 Subunit of the Ada histone acetyltransferase complex, required for structural integrity of the complex 1.608460533015 5099.70288085938 3611.24987792969 AHC1 16573 // histone acetylation // inferred from physical interaction 5671 // Ada2/Gcn5/Ada3 transcription activator complex // inferred from physical interaction 4402 // histone acetyltransferase activity // inferred from physical interaction 3722.9619140625 5988.2373046875 4211.16845703125 3499.53784179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR023C /GEN=AHC1 /DB_XREF=GI:6324597 /SEG=NC_001147:-376011,377711 /DEF=Ada Histone acetyltransferase complex component /NOTE=Ahc1p; go_component: Ada2/Gcn5/Ada3 transcription activator complex [goid GO:0005671] [evidence IPI] [pmid 10490601]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 10490601]; go_process: nucleosome disassembly [goid GO:0006337] [evidence IPI] [pmid 10490601] --- --- --- --- --- --- S0005549 // AHC1 SGDID:S0005549, Chr XV from 377711-376011, reverse complement, Verified ORF // sgd // 9 // --- /// GENSCAN00000017482 // cdna:Genscan chromosome:SGD1:XV:376011:377708:-1 // ensembl // 9 // --- /// GENEFINDER00000022694 // cdna:GeneFinder chromosome:SGD1:XV:376011:377561:-1 // ensembl // 9 // --- /// YOR023C // cdna:known chromosome:SGD1:XV:376011:377711:-1 gene:YOR023C // ensembl // 9 // --- --- No cerevisiae_gene -1.08633092858922 1.608460533015 -1.12148853907517 1.13113390742051 -1.06384387949664 Max fold change below threshold 4 1.608460533015 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770323_at YFR004W.S1 Metalloprotease subunit of the 19S regulatory particle of the 26S proteasome lid; couples the deubiquitination and degradation of proteasome substrates 1.60837810822053 3044.84350585938 2393.21484375 RPN11 6511 // ubiquitin-dependent protein catabolism // traceable author statement 5634 // nucleus // inferred from direct assay /// 8541 // proteasome regulatory particle, lid subcomplex (sensu Eukaryota) // inferred from direct assay /// 8541 // proteasome regulatory particle, lid subcomplex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement 2539.8671875 3375.5537109375 2714.13330078125 2246.5625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR004W /GEN=RPN11 /DB_XREF=GI:14318526 /SEG=NC_001138:+153388,154308 /DEF=Metalloprotease subunit of the 19S regulatory particle of the 26S proteasome lid; couples the deubiquitination and degradation of proteasome substrates /NOTE=Rpn11p; go_component: proteasome regulatory particle, lid subcomplex (sensu Eukarya) [goid GO:0008541] [evidence IDA] [pmid 11742986]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 9697412]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 9697412] --- --- --- --- --- --- S0001900 // RPN11 SGDID:S0001900, Chr VI from 153388-154308, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018562 // cdna:GeneFinder chromosome:SGD1:VI:153388:154308:1 // ensembl // 11 // --- /// GENSCAN00000023246 // cdna:Genscan chromosome:SGD1:VI:153388:154308:1 // ensembl // 11 // --- /// YFR004W // cdna:known chromosome:SGD1:VI:153388:154308:1 gene:YFR004W // ensembl // 11 // --- --- No cerevisiae_gene -1.60837810822053 1.32902764662276 -1.15013264898537 1.06861229364232 -1.13055710112672 Max fold change below threshold 4 1.60837810822053 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770696_at YHR011W.S1 Probable mitochondrial seryl-tRNA synthetase, mutant displays increased invasive and pseudohyphal growth 1.60810116879882 140.035598754883 217.500053405762 DIA4 1403 // invasive growth (sensu Saccharomyces) // inferred from genetic interaction /// 6434 // seryl-tRNA aminoacylation // inferred from genetic interaction /// 7124 // pseudohyphal growth // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from expression pattern 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from genetic interaction /// 5739 // mitochondrion // inferred from mutant phenotype 4828 // serine-tRNA ligase activity // inferred from sequence similarity /// 4828 // serine-tRNA ligase activity // inferred from genetic interaction /// 4828 // serine-tRNA ligase activity // inferred from mutant phenotype 201.554290771484 154.734375 125.336822509766 233.445816040039 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR011W /GEN=DIA4 /DB_XREF=GI:6321799 /SEG=NC_001140:+127773,129113 /DEF=Probable mitochondrial seryl-tRNA synthetase, mutant displays increased invasive and pseudohyphal growth /NOTE=Dia4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: mitochondrion [goid GO:0005739] [evidence IGI,IMP] [pmid 11747308]; go_function: serine-tRNA ligase activity [goid GO:0004828] [evidence ISS] [pmid 11063681]; go_function: serine-tRNA ligase activity [goid GO:0004828] [evidence IGI,IMP] [pmid 11747308]; go_process: aerobic respiration [goid GO:0009060] [evidence IEP,IMP] [pmid 10929718]; go_process: invasive growth (sensu Saccharomyces) [goid GO:0001403] [evidence IGI] [pmid 11063681]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 11063681]; go_process: seryl-tRNA aminoacylation [goid GO:0006434] [evidence IGI] [pmid 11747308] --- --- --- --- --- --- S0001053 // DIA4 SGDID:S0001053, Chr VIII from 127773-129113, Verified ORF // sgd // 11 // --- /// GENSCAN00000016563 // cdna:Genscan chromosome:SGD1:VIII:127857:129113:1 // ensembl // 11 // --- /// GENEFINDER00000020240 // cdna:GeneFinder chromosome:SGD1:VIII:127857:129113:1 // ensembl // 11 // --- /// YHR011W // cdna:known chromosome:SGD1:VIII:127773:129113:1 gene:YHR011W // ensembl // 11 // --- --- No cerevisiae_gene 1.14968587474266 -1.30258251129708 1.40321863884052 -1.60810116879882 1.15822796501372 Max fold change below threshold 4 1.60810116879882 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771940_at YGR239C.S1 Part of a two-member peroxin family (Pex18p and Pex21p) specifically required for peroxisomal targeting of the Pex7p peroxisomal signal recognition factor and PTS2-type peroxisomal matrix proteins 1.60806477443044 196.169288635254 328.533767700195 PEX21 6625 // protein-peroxisome targeting // inferred from mutant phenotype /// 6625 // protein-peroxisome targeting // inferred from physical interaction 5777 // peroxisome // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 5515 // protein binding // inferred from direct assay /// 8047 // enzyme activator activity // inferred from direct assay 300.610504150391 186.939300537109 205.399276733398 356.45703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR239C /GEN=PEX21 /DB_XREF=GI:6321678 /SEG=NC_001139:-969191,970057 /DEF=Peroxin; Pex18p and Pex21p are partially functionally redundant. /NOTE=Pex21p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 9864360]; go_component: peroxisome [goid GO:0005777] [evidence IDA] [pmid 9864360]; go_function: enzyme activator activity [goid GO:0008047] [evidence IDA] [pmid 12204379]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 9864360]; go_process: protein-peroxisome targeting [goid GO:0006625] [evidence IMP,IPI] [pmid 9864360] --- --- --- --- --- --- S0003471 // PEX21 SGDID:S0003471, Chr VII from 970058-969192, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019524 // cdna:Genscan chromosome:SGD1:VII:969192:970058:-1 // ensembl // 11 // --- /// YGR239C // cdna:known chromosome:SGD1:VII:969192:970058:-1 gene:YGR239C // ensembl // 11 // --- --- No cerevisiae_gene -1.490966627333 -1.60806477443044 -1.13372789278345 -1.46354217469117 1.18577703150277 Max fold change below threshold 4 1.60806477443044 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776886_at YGL232W.S1 Putative tRNA acetyltransferase, RNA-binding protein required for the formation of the modified nucleoside N(4)-acetylcytidine in serine and leucine tRNAs but not required for the same modification in 18S rRNA 1.60772551320422 225.067489624023 378.065444946289 TAN1 6400 // tRNA modification // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3723 // RNA binding // inferred from direct assay 349.681304931641 217.500625610352 232.634353637695 406.449584960938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL232W /GEN=TAN1 /DB_XREF=GI:6321205 /SEG=NC_001139:+62074,63001 /DEF=Putative tRNA acetyltransferase, RNA-binding protein required for the formation of the modified nucleoside N(4)-acetylcytidine in serine and leucine tRNAs but not required for the same modification in 18S rRNA /NOTE=Tan1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 15037780]; go_process: tRNA modification [goid GO:0006400] [evidence IMP] [pmid 15037780] --- --- --- --- --- --- S0003201 // TAN1 SGDID:S0003201, Chr VII from 62075-62131,62190-63002, intron sequence removed, Verified ORF // sgd // 10 // --- /// YGL232W // cdna:known chromosome:SGD1:VII:62075:63002:1 gene:YGL232W // ensembl // 10 // --- --- No cerevisiae_gene 1.13002649507255 -1.60772551320422 1.49744435436948 -1.50313700218255 1.16234290832447 Max fold change below threshold 4 1.60772551320422 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771080_at SPAC19B12.06c.S1 --- 1.60736243637766 --- --- --- --- 7.02558469772339 7.41171884536743 5.4809775352478 5.93882608413696 0.0239257998764515 0.303710997104645 0.129638999700546 0.030273400247097 P A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC19B12.06c /DEF=rhomboid family protease --- --- --- --- --- --- SPAC19B12.06c // |||rhomboid family protease|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.60736243637766 1.05496114049684 -1.43941509042628 -1.28181235054191 -1.18299216009865 Max fold change below threshold 4 1.60736243637766 Max fold change below threshold PAAAAP No 4 0 PAAP 2 2 0 No No 1 < x = 2
1773208_at YHR077C.S1 Protein involved in the nonsense-mediated mRNA decay (NMD) pathway; interacts with Nam7p and Upf3p 1.60714366706518 896.57421875 1332.40350341797 NMD2 184 // mRNA catabolism, nonsense-mediated decay // traceable author statement /// 6402 // mRNA catabolism // traceable author statement /// 6452 // translational frameshifting // inferred from mutant phenotype 5737 // cytoplasm // traceable author statement /// 5844 // polysome // inferred from direct assay 5515 // protein binding // traceable author statement 1288.990234375 991.110473632813 802.037963867188 1375.81677246094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR077C /GEN=NMD2 /DB_XREF=GI:6579193 /SEG=NC_001140:-252375,255757 /DEF=Component of the nonsense-mediated mRNA decay (NMD) pathway /NOTE=Nmd2p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 11238889]; go_component: polysome [goid GO:0005844] [evidence IDA] [pmid 9268361]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 11238889]; go_process: mRNA catabolism [goid GO:0006402] [evidence TAS] [pmid 9841679]; go_process: mRNA catabolism, nonsense-mediated [goid GO:0000184] [evidence TAS] [pmid 10098411] --- --- --- --- --- --- S0001119 // NMD2 SGDID:S0001119, Chr VIII from 255757-255752,255638-252375, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000016621 // cdna:Genscan chromosome:SGD1:VIII:252375:255650:-1 // ensembl // 11 // --- /// GENEFINDER00000020304 // cdna:GeneFinder chromosome:SGD1:VIII:252375:254492:-1 // ensembl // 11 // --- /// YHR077C // cdna:known chromosome:SGD1:VIII:252375:255757:-1 gene:YHR077C // ensembl // 11 // --- --- No cerevisiae_gene -1.07830219969642 -1.30055152141652 -1.02860801077294 -1.60714366706518 1.06736012094617 Max fold change below threshold 4 1.60714366706518 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776258_at YDR077W.S1 Major stress-induced structural GPI-cell wall glycoprotein in stationary-phase cells, associates with translating ribosomes, possible role in mitochondrial genome maintenance; ORF contains two distinct variable minisatellites 1.60710641134476 7948.802734375 7605.96997070313 SED1 2 // mitochondrial genome maintenance // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from expression pattern 5739 // mitochondrion // inferred from direct assay /// 5840 // ribosome // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from sequence similarity 5199 // structural constituent of cell wall // inferred from mutant phenotype /// 5199 // structural constituent of cell wall // inferred from expression pattern 9056.1552734375 9602.1611328125 6295.4443359375 6155.78466796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR077W /GEN=SED1 /DB_XREF=GI:6320282 /SEG=NC_001136:+600788,601804 /DEF=Isolated as a suppressor of an erd2 deletion mutant (ERD2 is the HDEL receptor that sorts ER proteins), SED1 encodes a cell wall protein. /NOTE=Sed1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA,ISS] [pmid 9613572]; go_component: ribosome [goid GO:0005840] [evidence IDA] [pmid 12627396]; go_function: structural constituent of cell wall [goid GO:0005199] [evidence IEP,IMP] [pmid 9642191]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IEP,IMP] [pmid 9642191] --- --- --- --- --- --- S0002484 // SED1 SGDID:S0002484, Chr IV from 600789-601805, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023452 // cdna:GeneFinder chromosome:SGD1:IV:600789:601805:1 // ensembl // 11 // --- /// GENSCAN00000025154 // cdna:Genscan chromosome:SGD1:IV:600789:601805:1 // ensembl // 11 // --- /// YDR077W // cdna:known chromosome:SGD1:IV:600789:601805:1 gene:YDR077W // ensembl // 11 // --- --- No cerevisiae_gene -1.42656865775754 1.06029113270357 -1.60710641134476 -1.43852519221566 -1.47116180339456 Max fold change below threshold 4 1.60710641134476 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773628_at YIL135C.S1 Cytoplasmic protein of unknown function; identified as a high-copy suppressor of the synthetic lethality of a sis2 sit4 double mutant, suggesting a role in G1/S phase progression; similar to Mlf3p 1.60698405375796 720.191009521484 890.965515136719 VHS2 82 // G1/S transition of mitotic cell cycle // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay --- 864.049255371094 537.683776855469 902.6982421875 917.881774902344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL135C /GEN=VHS2 /DB_XREF=GI:6322056 /SEG=NC_001141:-95065,96375 /DEF=Gene whose overexpression suppresses the synthetic lethality of the hal3 sit4 double mutation /NOTE=Vhs2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IGI] [pmid 12518319] --- --- --- --- --- --- S0001397 // VHS2 SGDID:S0001397, Chr IX from 96375-95065, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016374 // cdna:Genscan chromosome:SGD1:IX:95065:96375:-1 // ensembl // 11 // --- /// GENEFINDER00000019145 // cdna:GeneFinder chromosome:SGD1:IX:95065:96375:-1 // ensembl // 11 // --- /// YIL135C // cdna:known chromosome:SGD1:IX:95065:96375:-1 gene:YIL135C // ensembl // 11 // --- --- No cerevisiae_gene 1.03713035836402 -1.60698405375796 -1.06634227273405 1.04473007363429 1.06230260508486 Max fold change below threshold 4 1.60698405375796 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779865_at YBR242W.S1 Hypothetical protein 1.60679420290094 605.50830078125 998.418304443359 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 953.834777832031 617.390625 593.6259765625 1043.00183105469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR242W /GEN=THI2 /DB_XREF=GI:6319719 /SEG=NC_001134:+704627,705343 /DEF=Hypothetical ORF /NOTE=Ybr242wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000446 // YBR242W SGDID:S0000446, Chr II from 704665-705381, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000021333 // cdna:Genscan chromosome:SGD1:II:704665:705381:1 // ensembl // 10 // --- /// GENEFINDER00000022254 // cdna:GeneFinder chromosome:SGD1:II:704665:705381:1 // ensembl // 10 // --- /// YBR242W // cdna:known chromosome:SGD1:II:704665:705381:1 gene:YBR242W // ensembl // 10 // --- --- No cerevisiae_gene 1.04148466795571 -1.54494535421886 1.2557334193178 -1.60679420290094 1.09348270297433 Max fold change below threshold 4 1.60679420290094 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778462_at YNL277W-A.S1 Identified by expression profiling and mass spectrometry 1.60668734309251 53.7707786560059 77.6445693969727 --- --- --- --- 67.9131240844727 65.2725219726563 42.2690353393555 87.3760147094727 0.00585938012227416 0.0239257998764515 0.0239257998764515 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL277W-A /GEN=CAF120 /DB_XREF=GI:33438863 /SEG=NC_001146:+116677,116865 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Ynl277w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028852 // YNL277W-A SGDID:S0028852, Chr XIV from 116677-116865, Uncharacterized ORF // sgd // 11 // --- /// YNL277W-A // cdna:known chromosome:SGD1:XIV:116677:116865:1 gene:YNL277W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.38082509381275 -1.04045503424738 -1.06240480631616 -1.60668734309251 1.28658511719754 Max fold change below threshold 4 1.60668734309251 Max fold change below threshold PPPPPP No 3 0 PPPP 0 4 0 No No 3 < x
1772392_at YDR211W.S1 Catalytic epsilon subunit of the translation initiation factor eIF2B, the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression 1.60666573949993 334.213439941406 564.185272216797 GCD6 6413 // translational initiation // traceable author statement 5840 // ribosome // traceable author statement /// 5851 // eukaryotic translation initiation factor 2B complex // inferred from direct assay 3743 // translation initiation factor activity // traceable author statement /// 5085 // guanyl-nucleotide exchange factor activity // inferred from direct assay 490.212219238281 310.247833251953 358.179046630859 638.158325195313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR211W /GEN=GCD6 /DB_XREF=GI:6320417 /SEG=NC_001136:+884720,886858 /DEF=Catalytic epsilon subunit of the translation initiation factor eIF2B, the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression /NOTE=Gcd6p; go_component: eukaryotic translation initiation factor 2B complex [goid GO:0005851] [evidence IDA] [pmid 8336705]; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 9841679]; go_function: translation initiation factor activity [goid GO:0003743] [evidence TAS] [pmid 9841679]; go_process: translational initiation [goid GO:0006413] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0002619 // GCD6 SGDID:S0002619, Chr IV from 884722-886860, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023615 // cdna:GeneFinder chromosome:SGD1:IV:884722:886860:1 // ensembl // 11 // --- /// GENSCAN00000025261 // cdna:Genscan chromosome:SGD1:IV:884722:886860:1 // ensembl // 11 // --- /// YDR211W // cdna:known chromosome:SGD1:IV:884722:886860:1 gene:YDR211W // ensembl // 11 // --- --- No cerevisiae_gene 1.60666573949993 -1.58006653616233 -1.19200115049932 -1.36862338500637 1.30180011870556 Max fold change below threshold 4 1.60666573949993 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775086_at SPBC557.05.S1 --- 1.60603685118682 --- --- --- --- 8.92709350585938 11.0073575973511 7.16801404953003 5.98848485946655 0.194580003619194 0.171387001872063 0.24609400331974 0.303710997104645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC557.05 /DEF=arrestin family --- --- --- --- --- --- SPBC557.05 // |||arrestin family|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.60603685118682 1.23302815077789 -1.26095584792344 -1.24540680921861 -1.49070987325742 Max fold change below threshold 4 1.60603685118682 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771842_at YML057W.S1 Calcineurin A; one isoform (the other is CNA1) of the catalytic subunit of calcineurin, a Ca++/calmodulin-regulated protein phosphatase which regulates Crz1p (a stress-response transcription factor), the other calcineurin subunit is CNB1 1.60597502989942 2608.27990722656 2453.3154296875 CMP2 754 // adaptation to pheromone during conjugation with cellular fusion // inferred from mutant phenotype /// 6873 // cell ion homeostasis // inferred from mutant phenotype 5737 // cytoplasm // traceable author statement /// 5955 // calcineurin complex // inferred from sequence similarity /// 5955 // calcineurin complex // inferred from physical interaction 4723 // calcium-dependent protein serine/threonine phosphatase activity // inferred from sequence similarity 2527.77587890625 2987.83520507813 2228.724609375 2378.85498046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML057W /GEN=CMP2 /DB_XREF=GI:6323583 /SEG=NC_001145:+160180,161994 /DEF=calmodulin binding protein homologous to mammalian calcineurin /NOTE=Cmp2p; go_component: calcineurin complex [goid GO:0005955] [evidence IPI] [pmid 10887154]; go_component: calcineurin complex [goid GO:0005955] [evidence ISS] [pmid 1651503]; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 9123967]; go_function: calcium-dependent protein serine/threonine phosphatase activity [goid GO:0004723] [evidence ISS] [pmid 1651503]; go_process: adaptation to pheromone during conjugation with cellular fusion [goid GO:0000754] [evidence IMP] [pmid 1651503]; go_process: cell ion homeostasis [goid GO:0006873] [evidence IMP] [pmid 8798496] --- --- --- --- --- --- S0004521 // CMP2 SGDID:S0004521, Chr XIII from 160180-161994, Verified ORF // sgd // 11 // --- /// X16804 // Saccharomyces cerevisiae partial mRNA for protein phosphatase 2Bw catalytic subunit. // gb // 11 // --- /// GENSCAN00000018669 // cdna:Genscan chromosome:SGD1:XIII:160180:161994:1 // ensembl // 11 // --- /// GENEFINDER00000021864 // cdna:GeneFinder chromosome:SGD1:XIII:160180:161994:1 // ensembl // 11 // --- /// YML057W // cdna:known chromosome:SGD1:XIII:160180:161994:1 gene:YML057W // ensembl // 11 // --- --- No cerevisiae_gene -1.60597502989942 1.18200162839236 1.03544844051973 -1.1341804493356 -1.06260192389204 Max fold change below threshold 4 1.60597502989942 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777871_at YCR046C.S1 Mitochondrial ribosomal protein of the small subunit, required for respiration and for maintenance of the mitochondrial genome 1.60596360552529 813.19921875 940.852905273438 IMG1 6412 // protein biosynthesis // inferred from physical interaction /// 6412 // protein biosynthesis // inferred from mutant phenotype 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // inferred from physical interaction /// 3735 // structural constituent of ribosome // inferred from sequence similarity 879.770874023438 567.253662109375 1059.14477539063 1001.93493652344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR046C /GEN=IMG1 /DB_XREF=GI:6319894 /SEG=NC_001135:-209909,210418 /DEF=Mitochondrial ribosomal protein of the small subunit, required for respiration and for maintenance of the mitochondrial genome /NOTE=Img1p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IPI,ISS] [pmid 12392552]; go_process: protein biosynthesis [goid GO:0006412] [evidence IPI] [pmid 12392552]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP] [pmid 8771712] --- --- --- --- --- --- S0000642 // IMG1 SGDID:S0000642, Chr III from 210418-209909, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022491 // cdna:Genscan chromosome:SGD1:III:209909:210370:-1 // ensembl // 10 // --- /// GENEFINDER00000023382 // cdna:GeneFinder chromosome:SGD1:III:209909:210370:-1 // ensembl // 10 // --- /// YCR046C // cdna:known chromosome:SGD1:III:209909:210418:-1 gene:YCR046C // ensembl // 11 // --- --- No cerevisiae_gene -1.14749969907736 -1.55093026769002 1.60596360552529 1.20388706498871 1.13885895306048 Max fold change below threshold 4 1.60596360552529 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774904_at SPAC57A7.08.S1 --- 1.60552161955561 --- --- --- --- 11.7084455490112 15.3335552215576 18.7981624603271 9.69368553161621 0.0805663987994194 0.000244141003349796 0.00292969006113708 0.00195312988944352 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC57A7.08 /GEN=pzh1 /DEF=serinethreonine protein phosphatase --- --- --- --- --- --- SPAC57A7.08 // |pzh1||serine/threonine protein phosphatase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.23789924061528 1.30961494054627 1.13211144728091 1.60552161955561 -1.20784251880503 Max fold change below threshold 4 1.60552161955561 Max fold change below threshold APPPPP No 1 0 APPP 1 3 0 No No 2 < x = 3
1772750_at YPR086W.S1 Transcription factor TFIIB, a general transcription factor required for transcription initiation and start site selection by RNA polymerase II 1.60543815731364 1473.59313964844 1405.46374511719 SUA7 6367 // transcription initiation from RNA polymerase II promoter // inferred from direct assay /// 6367 // transcription initiation from RNA polymerase II promoter // inferred from sequence similarity /// 6367 // transcription initiation from RNA polymerase II promoter // inferred from physical interaction 5654 // nucleoplasm // inferred from physical interaction 16251 // general RNA polymerase II transcription factor activity // inferred from physical interaction /// 16251 // general RNA polymerase II transcription factor activity // inferred from direct assay /// 16251 // general RNA polymerase II transcription factor activity // inferred from sequence similarity 1320.1259765625 1184.09594726563 1763.09033203125 1490.80151367188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR086W /GEN=SUA7 /DB_XREF=GI:6325343 /SEG=NC_001148:+710097,711134 /DEF=transcription factor TFIIB homolog /NOTE=Sua7p; go_component: nucleoplasm [goid GO:0005654] [evidence IPI] [pmid 10438492]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence IDA,IPI,ISS] [pmid 10438492]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence IDA,IPI,ISS] [pmid 10438492] --- --- --- --- --- --- S0006290 // SUA7 SGDID:S0006290, Chr XVI from 710099-711136, Verified ORF // sgd // 11 // --- /// GENSCAN00000017250 // cdna:Genscan chromosome:SGD1:XVI:710099:711136:1 // ensembl // 11 // --- /// GENEFINDER00000020857 // cdna:GeneFinder chromosome:SGD1:XVI:710102:711136:1 // ensembl // 11 // --- /// YPR086W // cdna:known chromosome:SGD1:XVI:710099:711136:1 gene:YPR086W // ensembl // 11 // --- --- No cerevisiae_gene 1.16226746899895 -1.11488091789437 1.60543815731364 1.33554703364159 1.12928731055941 Max fold change below threshold 4 1.60543815731364 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770052_at SPAC17A2.03c.S1 --- 1.60534023732045 --- --- --- --- 0.349370002746582 0.447213262319565 0.288297235965729 0.377820074558258 0.870360970497131 0.850341975688934 0.870360970497131 0.753906011581421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A2.03c /GEN=vma6 /DEF=vacuolar ATP synthase (subunit D) (predicted) --- --- --- --- --- --- SPAC17A2.03c // |vma6||vacuolar ATP synthase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.18201458818423 1.28005626929555 -1.60534023732045 -1.21183958485163 1.08143249731807 Max fold change below threshold 0 1.60534023732045 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775819_at SPBC3B8.06.S1 --- 1.60518178184255 --- --- --- --- 0.706341326236725 0.974119186401367 0.754905641078949 1.1338062286377 0.962401986122131 0.953857004642487 0.962401986122131 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC3B8.06 /DEF=conserved fungal protein --- --- --- --- --- --- SPBC3B8.06 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.25702513002036 1.37910546957704 1.03582035470241 1.06875474085732 1.60518178184255 Max fold change below threshold 0 1.60518178184255 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777723_at YKL087C.S1 Cytochrome c1 heme lyase, involved in maturation of cytochrome c1, which is a subunit of the mitochondrial ubiquinol-cytochrome-c reductase; links heme covalently to apocytochrome c1 1.60501295750384 503.755477905273 574.587188720703 CYT2 18063 // cytochrome c-heme linkage // inferred from sequence similarity /// 18063 // cytochrome c-heme linkage // inferred from mutant phenotype 5758 // mitochondrial intermembrane space // inferred from direct assay 4408 // holocytochrome-c synthase activity // inferred from sequence similarity /// 4408 // holocytochrome-c synthase activity // inferred from mutant phenotype 575.376586914063 434.662322998047 572.8486328125 573.797790527344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL087C /GEN=CYT2 /DB_XREF=GI:6322763 /SEG=NC_001143:-276834,277508 /DEF=links heme covalently to apocytochrome c1 /NOTE=Cyt2p; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence IDA] [pmid 7559417]; go_function: holocytochrome-c synthase activity [goid GO:0004408] [evidence IMP,ISS] [pmid 1499554]; go_process: cytochrome c-heme linkage [goid GO:0018063] [evidence IMP,ISS] [pmid 1499554] --- --- --- --- --- --- S0001570 // CYT2 SGDID:S0001570, Chr XI from 277508-276834, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022963 // cdna:GeneFinder chromosome:SGD1:XI:276834:277505:-1 // ensembl // 11 // --- /// YKL087C // cdna:known chromosome:SGD1:XI:276834:277508:-1 gene:YKL087C // ensembl // 11 // --- GENSCAN00000018353 // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene 1.60501295750384 -1.32373236986691 1.06243713515583 -1.00441295301544 -1.00275148565014 Max fold change below threshold 4 1.60501295750384 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775735_x_at SPBC1105.12.S1 --- 1.60477587780061 --- --- --- --- 7.56548929214478 7.62328958511353 6.35441732406616 5.24806356430054 0.030273400247097 0.24609400331974 0.0375977009534836 0.194580003619194 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1105.12 /GEN=h4.3 /DEF=histone H4 --- --- --- --- --- --- SPBC1105.12 // |h4.3|hhf3|histone H4|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.38358797248483 1.00763999402243 -1.60477587780061 -1.1905874144419 -1.44157729788342 Max fold change below threshold 4 1.60477587780061 Max fold change below threshold PPAAPA No 4 0 PAPA 2 2 0 No No 1 < x = 2
1770394_at YCR073C.S1 MAP kinase kinase kinase of the HOG1 mitogen-activated signaling pathway; functionally redundant with, and homologous to, Ssk2p; interacts with and is activated by Ssk1p; phosphorylates Pbs2p 1.60475172208388 221.697341918945 158.870658874512 SSK22 168 // activation of MAPKK activity during osmolarity sensing // traceable author statement /// 6468 // protein amino acid phosphorylation // traceable author statement /// 7231 // osmosensory signaling pathway // traceable author statement --- 4709 // MAP kinase kinase kinase activity // traceable author statement 148.316268920898 205.383895874023 238.010787963867 169.425048828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR073C /GEN=SSK22 /DB_XREF=GI:10383805 /SEG=NC_001135:-242584,246579 /DEF=functionally redundant with, and homologous to, SSK2 /NOTE=Ssk22p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: MAP kinase kinase kinase activity [goid GO:0004709] [evidence TAS] [pmid 9305639]; go_process: activation of MAPKK during osmolarity sensing [goid GO:0000168] [evidence TAS] [pmid 9305639]; go_process: osmosensory signaling pathway [goid GO:0007231] [evidence TAS] [pmid 7624781]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 9305639] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 3.0E-67 /// hanks // 1.9.3 // AGC group; AGC Other; Mast205 // 3.0E-68 --- --- S0000669 // SSK22 SGDID:S0000669, Chr III from 246579-242584, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023396 // cdna:GeneFinder chromosome:SGD1:III:240098:246174:-1 // ensembl // 10 // --- /// GENSCAN00000022509 // cdna:Genscan chromosome:SGD1:III:242584:246579:-1 // ensembl // 11 // --- /// YCR073C // cdna:known chromosome:SGD1:III:242584:246579:-1 gene:YCR073C // ensembl // 11 // --- --- No cerevisiae_gene 1.48733767452962 1.38476983926531 -1.13726633374904 1.60475172208388 1.14232275434655 Max fold change below threshold 4 1.60475172208388 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771533_at YAR031W.S1 Pheromone-regulated protein with 3 predicted transmembrane segments and an FF sequence, a motif involved in COPII binding 1.60463180464969 83.0811996459961 125.192272186279 PRM9 16050 // vesicle organization and biogenesis // inferred from physical interaction 5783 // endoplasmic reticulum // inferred from physical interaction /// 5886 // plasma membrane // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity --- 123.350242614746 76.8713684082031 89.2910308837891 127.034301757813 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR031W /GEN=PRM9 /DB_XREF=GI:6319334 /SEG=NC_001133:+186832,187728 /DEF=Pheromone-regulated protein with 3 predicted transmembrane segments and an FF sequence, a motif involved in COPII binding; forms a complex with Prp9p in the ER /NOTE=Prm9p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IPI] [pmid 12925749]; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 11062271]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12101299]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IEP] [pmid 11062271] --- --- --- --- --- S0000078 // span:112-131,141-163 // numtm:2 S0000078 // PRM9 SGDID:S0000078, Chr I from 186830-187726, Verified ORF // sgd // 11 // --- /// GENSCAN00000020393 // cdna:Genscan chromosome:SGD1:I:187016:187726:1 // ensembl // 11 // --- /// YAR031W // cdna:known chromosome:SGD1:I:186830:187726:1 gene:YAR031W // ensembl // 11 // --- GENEFINDER00000018212 // ensembl // 3 // Cross Hyb Matching Probes No cerevisiae_gene -1.01698774357066 -1.60463180464969 1.34831145162135 -1.38144045817194 1.0298666550221 Max fold change below threshold 4 1.60463180464969 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771402_at YDR502C.S1 S-adenosylmethionine synthetase, catalyzes transfer of the adenosyl group of ATP to the sulfur atom of methionine; one of two differentially regulated isozymes (Sam1p and Sam2p) 1.60454845263497 6497.73071289063 4492.00708007813 SAM2 6555 // methionine metabolism // traceable author statement --- 4478 // methionine adenosyltransferase activity // traceable author statement 4814.11572265625 7724.48193359375 5270.9794921875 4169.8984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR502C /GEN=SAM2 /DB_XREF=GI:6320710 /SEG=NC_001136:-1453298,1454452 /DEF=methionine biosynthesis regulation /NOTE=Sam2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: methionine adenosyltransferase activity [goid GO:0004478] [evidence TAS] [pmid 1903502]; go_process: methionine metabolism [goid GO:0006555] [evidence TAS] [pmid 1903502] --- --- --- --- --- --- S0002910 // SAM2 SGDID:S0002910, Chr IV from 1454454-1453300, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023900 // cdna:GeneFinder chromosome:SGD1:IV:1453300:1454454:-1 // ensembl // 11 // --- /// GENSCAN00000025493 // cdna:Genscan chromosome:SGD1:IV:1453300:1454454:-1 // ensembl // 11 // --- /// YDR502C // cdna:known chromosome:SGD1:IV:1453300:1454454:-1 gene:YDR502C // ensembl // 11 // --- --- No cerevisiae_gene -1.5989635200746 1.60454845263497 -1.02018071294935 1.09490086982769 -1.15449232033154 Max fold change below threshold 4 1.60454845263497 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779533_at YJR042W.S1 Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), required for assembly of the subcomplex and also for formation of the nucleocytoplasmic Gsp1p concentration gradient that plays a role in nuclear trafficking 1.60452135023045 431.433898925781 584.680236816406 NUP85 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6998 // nuclear membrane organization and biogenesis // inferred from mutant phenotype /// 6999 // nuclear pore organization and biogenesis // traceable author statement 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement 553.21240234375 344.783447265625 518.084350585938 616.148071289063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR042W /GEN=NUP85 /DB_XREF=GI:6322502 /SEG=NC_001142:+513969,516203 /DEF=Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), required for assembly of the subcomplex and also for formation of the nucleocytoplasmic Gsp1p concentration gradient that plays a role in nuclear trafficking /NOTE=Nup85p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 9442897]; go_process: nuclear membrane organization and biogenesis [goid GO:0006998] [evidence IMP] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0003803 // NUP85 SGDID:S0003803, Chr X from 513969-516203, Verified ORF // sgd // 11 // --- /// GENSCAN00000024166 // cdna:Genscan chromosome:SGD1:X:513969:516203:1 // ensembl // 11 // --- /// GENEFINDER00000024412 // cdna:GeneFinder chromosome:SGD1:X:513969:516203:1 // ensembl // 11 // --- /// YJR042W // cdna:known chromosome:SGD1:X:513969:516203:1 gene:YJR042W // ensembl // 11 // --- --- No cerevisiae_gene -1.10942527731097 -1.60452135023045 1.06639211759441 -1.06780373064364 1.11376402386982 Max fold change below threshold 4 1.60452135023045 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774638_at SPAC323.04.S1 --- 1.60448480511035 --- --- --- --- 2.02680015563965 3.25197005271912 1.98769962787628 2.82794165611267 0.753906011581421 0.780517995357513 0.798583984375 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC323.04 /DEF=ATPase --- --- --- --- --- --- SPAC323.04 // |||ATPase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.2460668230715 1.60448480511035 -1.59860798570978 -1.01967124570282 1.39527404724329 Max fold change below threshold 2 1.60448480511035 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773967_at YDL053C.S1 Pbp1p binding protein, interacts strongly with Pab1p-binding protein 1 (Pbp1p) in the yeast two-hybrid system 1.6042800574118 1426.80053710938 1281.67895507813 PBP4 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1237.37707519531 1397.86401367188 1455.73706054688 1325.98083496094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL053C /GEN=PBP4 /DB_XREF=GI:6320150 /SEG=NC_001136:-361699,362256 /DEF=Pbp1p binding protein, interacts strongly with Pab1p-binding protein 1 (Pbp1p) in the yeast two-hybrid system /NOTE=Pbp4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002211 // PBP4 SGDID:S0002211, Chr IV from 362256-361699, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023870 // cdna:GeneFinder chromosome:SGD1:IV:361699:362256:-1 // ensembl // 11 // --- /// GENSCAN00000025060 // cdna:Genscan chromosome:SGD1:IV:361699:362256:-1 // ensembl // 11 // --- /// YDL053C // cdna:known chromosome:SGD1:IV:361699:362256:-1 gene:YDL053C // ensembl // 11 // --- --- No cerevisiae_gene 1.6042800574118 1.12969929837372 1.17583087335163 1.17647004274513 1.07160611065276 Max fold change below threshold 4 1.6042800574118 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773427_at YLR367W.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps22Ap and has similarity to E. coli S8 and rat S15a ribosomal proteins 1.60422577326891 1397.87902832031 2152.79443359375 RPS22B 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 2214.21166992188 1415.52111816406 1380.23693847656 2091.37719726563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR367W /GEN=RPS22B /DB_XREF=GI:6323399 /SEG=NC_001144:+856441,857316 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps22Ap and has similarity to E. coli S8 and rat S15a ribosomal proteins /NOTE=Rps22bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004359 // RPS22B SGDID:S0004359, Chr XII from 856441-856573,857057-857316, intron sequence removed, Verified ORF // sgd // 11 // --- /// YLR367W // cdna:known chromosome:SGD1:XII:856441:857316:1 gene:YLR367W // ensembl // 11 // --- --- No cerevisiae_gene 1.28274989412212 -1.56423782132881 -1.51851787049115 -1.60422577326891 -1.05873377256712 Max fold change below threshold 4 1.60422577326891 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772108_at SPAC29A4.08c.S1 --- 1.60356222361294 --- --- --- --- 7.34277772903442 9.66580009460449 11.774600982666 7.05826568603516 0.111571997404099 0.219482004642487 0.149657994508743 0.030273400247097 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29A4.08c /GEN=prp19 /DEF=ubiquitin-protein ligase (E4) (predicted) (PMID 12627222) --- --- --- --- --- --- SPAC29A4.08c // |prp19|cwf8|ubiquitin-protein ligase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.01943125784653 1.31636833515803 -1.24833001867681 1.60356222361294 -1.0403090582949 Max fold change below threshold 4 1.60356222361294 Max fold change below threshold APAAAP No 4 0 AAAP 3 1 0 No No x = 1
1774095_at YOL025W.S1 Protein involved in determination of longevity; LAG2 gene is preferentially expressed in young cells; overexpression extends the mean and maximum life span of cells 1.60348858393003 706.141357421875 880.364410400391 LAG2 1302 // replicative cell aging // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay --- 918.632385253906 579.34130859375 832.94140625 842.096435546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL025W /GEN=LAG2 /DB_XREF=GI:6324548 /SEG=NC_001147:+274957,276939 /DEF=affects longevity /NOTE=Lag2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: replicative cell aging [goid GO:0001302] [evidence IMP] [pmid 8760941] --- --- --- --- scop // a.2.5.Prefoldin // All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin // 4.90000009536743 --- S0005385 // LAG2 SGDID:S0005385, Chr XV from 274957-276939, Verified ORF // sgd // 11 // --- /// GENSCAN00000017447 // cdna:Genscan chromosome:SGD1:XV:274957:276939:1 // ensembl // 11 // --- /// GENEFINDER00000022590 // cdna:GeneFinder chromosome:SGD1:XV:275527:276939:1 // ensembl // 11 // --- /// YOL025W // cdna:known chromosome:SGD1:XV:274957:276939:1 gene:YOL025W // ensembl // 11 // --- --- No cerevisiae_gene -1.60348858393003 -1.58564972258534 1.03171324347764 -1.10287755940685 -1.09088739303038 Max fold change below threshold 4 1.60348858393003 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773658_at YKR065C.S1 The authentic, non-tagged protein was localized to the mitochondria 1.6033571938119 933.101135253906 1188.21954345703 --- --- 5739 // mitochondrion // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity --- 1119.40637207031 698.1640625 1168.03820800781 1257.03271484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR065C /GEN=LAS1 /DB_XREF=GI:6322918 /SEG=NC_001143:-564941,565534 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ykr065cp --- --- --- --- --- S0001773 // span:64-86,101-123 // numtm:2 S0001773 // FMP18 SGDID:S0001773, Chr XI from 565534-564941, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YKR065C // cdna:known chromosome:SGD1:XI:564941:565534:-1 gene:YKR065C // ensembl // 11 // --- --- No cerevisiae_gene 1.08537806849312 -1.6033571938119 1.42084967389397 1.04344430865402 1.1229458275451 Max fold change below threshold 4 1.6033571938119 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778760_at YML081W.S1 Hypothetical protein 1.60324069068592 832.262023925781 1294.89868164063 --- --- 5634 // nucleus // inferred from direct assay --- 1230.88647460938 767.7490234375 896.775024414063 1358.91088867188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML081W /GEN=ATP18 /DB_XREF=GI:6323559 /SEG=NC_001145:+104777,108532 /DEF=Hypothetical ORF /NOTE=Yml081wp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004546 // span:1094-1111 // numtm:1 S0004546 // YML081W SGDID:S0004546, Chr XIII from 104777-108532, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018649 // cdna:Genscan chromosome:SGD1:XIII:104777:108532:1 // ensembl // 11 // --- /// GENEFINDER00000021986 // cdna:GeneFinder chromosome:SGD1:XIII:105887:108532:1 // ensembl // 11 // --- /// YML081W // cdna:known chromosome:SGD1:XIII:104777:108532:1 gene:YML081W // ensembl // 11 // --- --- No cerevisiae_gene -1.56064153411004 -1.60324069068592 -1.25740643809297 -1.37256997697234 1.10400992837551 Max fold change below threshold 4 1.60324069068592 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770065_at YBR011C.S1 Cytoplasmic inorganic pyrophosphatase (PPase), catalyzes the rapid exchange of oxygens from Pi with water, highly expressed and essential for viability, active-site residues show identity to those from E. coli PPase 1.60280633312318 4352.75964355469 5837.05712890625 IPP1 6796 // phosphate metabolism // inferred from curator 5829 // cytosol // traceable author statement 4427 // inorganic diphosphatase activity // inferred from direct assay 6485.328125 4659.2861328125 4046.23315429688 5188.7861328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR011C /GEN=IPP1 /DB_XREF=GI:6319483 /SEG=NC_001134:-257072,257935 /DEF=Cytoplasmic inorganic pyrophosphatase (PPase), catalyzes the rapid exchange of oxygens from Pi with water, highly expressed and essential for viability, active-site residues show identity to those from E. coli PPase /NOTE=Ipp1p; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 12451180]; go_function: inorganic diphosphatase activity [goid GO:0004427] [evidence IDA] [pmid 8224193]; go_process: phosphate metabolism [goid GO:0006796] [evidence IC] [pmid 8224193] --- --- --- --- --- --- S0000215 // IPP1 SGDID:S0000215, Chr II from 257973-257110, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021147 // cdna:Genscan chromosome:SGD1:II:257110:257973:-1 // ensembl // 11 // --- /// GENEFINDER00000022261 // cdna:GeneFinder chromosome:SGD1:II:257110:257973:-1 // ensembl // 11 // --- /// YBR011C // cdna:known chromosome:SGD1:II:257110:257973:-1 gene:YBR011C // ensembl // 11 // --- --- No cerevisiae_gene -1.26139308368132 -1.39191454230033 -1.37146066974856 -1.60280633312318 -1.24987385469378 Max fold change below threshold 4 1.60280633312318 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773708_at YNL267W.S1 Phosphatidylinositol 4-kinase; catalyzes first step in the biosynthesis of phosphatidylinositol-4,5-biphosphate; may control cytokineses through the actin cytoskeleton 1.60255722870894 411.237762451172 339.574295043945 PIK1 910 // cytokinesis // inferred from mutant phenotype /// 6892 // post-Golgi transport // inferred from genetic interaction /// 30437 // sporulation (sensu Fungi) // inferred from genetic interaction /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype /// 46854 // phosphoinositide phosphorylation // inferred from direct assay /// 48017 // inositol lipid-mediated signaling // traceable author statement 5634 // nucleus // inferred from direct assay /// 5794 // Golgi apparatus // traceable author statement 4430 // 1-phosphatidylinositol 4-kinase activity // traceable author statement /// 4430 // 1-phosphatidylinositol 4-kinase activity // inferred from direct assay 321.932250976563 342.191345214844 480.2841796875 357.216339111328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL267W /GEN=PIK1 /DB_XREF=GI:6324062 /SEG=NC_001146:+140877,144077 /DEF=catalyzes first step in the biosynthesis of phosphatidylinositol-4,5-biphosphate; may control cytokineses through the actin cytoskeleton /NOTE=Pik1p; go_component: Golgi apparatus [goid GO:0005794] [evidence TAS] [pmid 12015967]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8194527]; go_function: 1-phosphatidylinositol 4-kinase activity [goid GO:0004430] [evidence TAS] [pmid 8194527]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 8194527]; go_process: post-Golgi transport [goid GO:0006892] [evidence IGI] [pmid 10567405]; go_process: signal transduction [goid GO:0007165] [evidence TAS] [pmid 8194527] --- --- --- --- --- --- S0005211 // PIK1 SGDID:S0005211, Chr XIV from 140877-144077, Verified ORF // sgd // 11 // --- /// GENSCAN00000019828 // cdna:Genscan chromosome:SGD1:XIV:141114:144077:1 // ensembl // 11 // --- /// GENEFINDER00000020579 // cdna:GeneFinder chromosome:SGD1:XIV:141114:144222:1 // ensembl // 11 // --- /// YNL267W // cdna:known chromosome:SGD1:XIV:140877:144077:1 gene:YNL267W // ensembl // 11 // --- --- No cerevisiae_gene 1.11878661221134 1.06292968218259 1.60255722870894 1.49187966794438 1.1096009735829 Max fold change below threshold 4 1.60255722870894 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774265_at YDR172W.S1 Translation termination factor eRF3; altered protein conformation creates the [PSI(+)] prion, a dominant cytoplasmically inherited protein aggregate that alters translational fidelity and creates a nonsense suppressor phenotype 1.60235854626478 2134.82275390625 1673.802734375 SUP35 288 // mRNA catabolism, deadenylylation-dependent decay // inferred from mutant phenotype /// 288 // mRNA catabolism, deadenylylation-dependent decay // inferred from physical interaction /// 6415 // translational termination // traceable author statement 5829 // cytosol // traceable author statement /// 18444 // translation release factor complex // inferred from direct assay 3747 // translation release factor activity // traceable author statement 1759.49633789063 2098.947265625 2170.6982421875 1588.10913085938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR172W /GEN=SUP35 /DB_XREF=GI:6320377 /SEG=NC_001136:+808318,810375 /DEF=altered form creates [PSI] prion /NOTE=Sup35p; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 8082183]; go_function: translation release factor activity [goid GO:0003747] [evidence TAS] [pmid 8082183]; go_process: mRNA catabolism, deadenylation-dependent [goid GO:0000288] [evidence IMP,IPI] [pmid 12923185]; go_process: translational termination [goid GO:0006415] [evidence TAS] [pmid 8082183] --- --- --- --- --- --- S0002579 // SUP35 SGDID:S0002579, Chr IV from 808319-810376, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023634 // cdna:GeneFinder chromosome:SGD1:IV:808319:810376:1 // ensembl // 11 // --- /// GENSCAN00000025229 // cdna:Genscan chromosome:SGD1:IV:808319:810376:1 // ensembl // 11 // --- /// YDR172W // cdna:known chromosome:SGD1:IV:808319:810376:1 gene:YDR172W // ensembl // 11 // --- --- No cerevisiae_gene 1.60235854626478 1.19292505498552 -1.15469126667933 1.23370432517629 -1.10791903635647 Max fold change below threshold 4 1.60235854626478 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769752_at SPBP4H10.09.S1 --- 1.60175737506986 --- --- --- --- 8.01616954803467 5.23851585388184 9.82679557800293 10.2486047744751 0.129638999700546 0.149657994508743 0.0676269978284836 0.0375977009534836 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBP4H10.09 /GEN=rsv1 /DEF=transcription factor (predicted) --- --- --- --- --- --- SPBP4H10.09 // |rsv1||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.44395745996293 -1.53023676392896 -1.60175737506986 1.22587172328611 1.27849151805774 Max fold change below threshold 4 1.60175737506986 Max fold change below threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1774644_at YMR302C.S1 Integral inner mitochondrial membrane protein with similarity to exonucleases; prp12 mutants exhibit an increased rate of mt DNA escape 1.60158712472609 1501.65148925781 1324.70678710938 PRP12 2 // mitochondrial genome maintenance // inferred from mutant phenotype /// 6364 // rRNA processing // inferred from mutant phenotype 5743 // mitochondrial inner membrane // traceable author statement 4527 // exonuclease activity // inferred from sequence similarity 1171.220703125 1421.18786621094 1582.11511230469 1478.19287109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR302C /GEN=PRP12 /DB_XREF=GI:6323960 /SEG=NC_001145:-870072,872624 /DEF=Integral inner mitochondrial membrane protein with similarity to exonucleases; prp12 mutants exhibit an increased rate of mt DNA escape /NOTE=Prp12p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence TAS] [pmid 8649384]; go_function: exonuclease activity [goid GO:0004527] [evidence ISS] [pmid 9933355]; go_process: mitochondrial genome maintenance [goid GO:0000002] [evidence IMP] [pmid 8514129]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 1557037] --- --- --- --- scop // a.4.1.DNA-binding domain of rap1 // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; DNA-binding domain of rap1 // 4.19999980926514 --- S0004917 // PRP12 SGDID:S0004917, Chr XIII from 872624-870072, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018968 // cdna:Genscan chromosome:SGD1:XIII:870072:872624:-1 // ensembl // 11 // --- /// GENEFINDER00000022073 // cdna:GeneFinder chromosome:SGD1:XIII:870072:872585:-1 // ensembl // 11 // --- /// YMR302C // cdna:known chromosome:SGD1:XIII:870072:872624:-1 gene:YMR302C // ensembl // 11 // --- --- No cerevisiae_gene -1.60158712472609 1.21342447449826 1.44027675869027 1.3508257735569 1.26209592022212 Max fold change below threshold 4 1.60158712472609 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775369_s_at YGR138C.S1 Polyamine transport protein specific for spermine; localizes to the plasma membrane; member of the major facilitator superfamily /// Polyamine transport protein specific for spermine; localizes to the plasma membrane; transcription of TPO2 is regulated by Haa1p; member of the major facilitator superfamily 1.60087294555972 2839.83898925781 1842.69244384766 TPO3 /// TPO2 15846 // polyamine transport // inferred from mutant phenotype 5774 // vacuolar membrane // inferred from mutant phenotype /// 5886 // plasma membrane // inferred from direct assay 297 // spermine transporter activity // inferred from mutant phenotype 1776.32470703125 2836.0078125 2843.67016601563 1909.06018066406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR138C /GEN=TPO2 /DB_XREF=GI:6321577 /SEG=NC_001139:-763765,765609 /DEF=Polyamine transport protein /NOTE=Tpo2p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12562762]; go_component: vacuolar membrane [goid GO:0005774] [evidence IMP] [pmid 11171066]; go_function: spermine transporter activity [goid GO:0000297] [evidence IMP] [pmid 11171066]; go_process: polyamine transport [goid GO:0015846] [evidence IMP] [pmid 11171066] --- --- --- --- --- S0003370 // span:175-197,207-229,236-258,262-284,296-318,333-355,402-424,439-458,479-501,505-527,540-562,572-594 // numtm:12 /// S0006360 // span:184-206,216-238,245-267,271-293,305-327,342-364,411-433,448-467,488-510,514-536,549-571,581-603 // numtm:12 S0003370 // TPO2 SGDID:S0003370, Chr VII from 765611-763767, reverse complement, Verified ORF // sgd // 11 // --- /// S0006360 // TPO3 SGDID:S0006360, Chr XVI from 839773-837905, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019447 // cdna:Genscan chromosome:SGD1:VII:763767:765611:-1 // ensembl // 11 // --- /// GENEFINDER00000021619 // cdna:GeneFinder chromosome:SGD1:VII:763767:765611:-1 // ensembl // 11 // --- /// GENSCAN00000017299 // cdna:Genscan chromosome:SGD1:XVI:837905:839773:-1 // ensembl // 11 // --- /// GENEFINDER00000020924 // cdna:GeneFinder chromosome:SGD1:XVI:837905:839773:-1 // ensembl // 11 // --- /// YGR138C // cdna:known chromosome:SGD1:VII:763767:765611:-1 gene:YGR138C // ensembl // 11 // --- /// YPR156C // cdna:known chromosome:SGD1:XVI:837905:839773:-1 gene:YPR156C // ensembl // 11 // --- --- No cerevisiae_gene 1.25278380763916 1.59655934597666 1.03019011174814 1.60087294555972 1.0747247803892 Max fold change below threshold 4 1.60087294555972 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770431_at YKR062W.S1 TFIIE small subunit, involved in RNA polymerase II transcription initiation 1.60082721505885 659.221649169922 467.254684448242 TFA2 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement 5673 // transcription factor TFIIE complex // traceable author statement 16251 // general RNA polymerase II transcription factor activity // traceable author statement 470.416656494141 565.387512207031 753.055786132813 464.092712402344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR062W /GEN=TFA2 /DB_XREF=GI:6322915 /SEG=NC_001143:+559308,560294 /DEF=TFIIE small subunit, involved in RNA polymerase II transcription initiation /NOTE=Tfa2p; go_component: transcription factor TFIIE complex [goid GO:0005673] [evidence TAS] [pmid 9774381]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9774381]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 10384286] --- --- --- --- --- --- S0001770 // TFA2 SGDID:S0001770, Chr XI from 559308-560294, Verified ORF // sgd // 10 // --- /// GENSCAN00000018470 // cdna:Genscan chromosome:SGD1:XI:559308:560294:1 // ensembl // 10 // --- /// GENEFINDER00000022978 // cdna:GeneFinder chromosome:SGD1:XI:559308:560294:1 // ensembl // 10 // --- /// YKR062W // cdna:known chromosome:SGD1:XI:559308:560294:1 gene:YKR062W // ensembl // 10 // --- --- No cerevisiae_gene 1.04567957690537 1.20188667727176 1.48768730035584 1.60082721505885 -1.0136264671321 Max fold change below threshold 4 1.60082721505885 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772720_at YOL023W.S1 Mitochondrial translation initiation factor 2 1.60071651728634 137.177959442139 204.616104125977 IFM1 6413 // translational initiation // inferred from mutant phenotype /// 6413 // translational initiation // inferred from sequence similarity 5739 // mitochondrion // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from direct assay 3723 // RNA binding // inferred from direct assay /// 3743 // translation initiation factor activity // inferred from sequence similarity /// 3743 // translation initiation factor activity // inferred from mutant phenotype /// 3924 // GTPase activity // inferred from direct assay 192.225021362305 120.515251159668 153.840667724609 217.007186889648 0.000244141003349796 0.00195312988944352 0.00292969006113708 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL023W /GEN=IFM1 /DB_XREF=GI:6324550 /SEG=NC_001147:+278056,280086 /DEF=Mitochondrial translation initiation factor 2 /NOTE=Ifm1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11914276]; go_component: mitochondrion [goid GO:0005739] [evidence IMP] [pmid 1935960]; go_function: GTPase activity [goid GO:0003924] [evidence IDA] [pmid 12729623]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 12729623]; go_function: translation initiation factor activity [goid GO:0003743] [evidence IMP,ISS] [pmid 1935960]; go_process: translational initiation [goid GO:0006413] [evidence IMP,ISS] [pmid 1935960] --- --- --- --- --- --- S0005383 // IFM1 SGDID:S0005383, Chr XV from 278056-280086, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022802 // cdna:GeneFinder chromosome:SGD1:XV:278683:280086:1 // ensembl // 11 // --- /// GENSCAN00000017448 // cdna:Genscan chromosome:SGD1:XV:278962:280086:1 // ensembl // 11 // --- /// YOL023W // cdna:known chromosome:SGD1:XV:278056:280086:1 gene:YOL023W // ensembl // 11 // --- --- No cerevisiae_gene -1.60071651728634 -1.59502651749553 1.21115208786013 -1.24950719601924 1.12892268317471 Max fold change below threshold 4 1.60071651728634 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772418_at YIL034C.S1 Beta subunit of the capping protein (CP) heterodimer (Cap1p and Cap2p) which binds to the barbed ends of actin filaments preventing further polymerization; localized predominantly to cortical actin patches 1.60067909931948 998.40625 1446.94995117188 CAP2 30447 // filamentous growth // inferred from mutant phenotype /// 51016 // barbed-end actin filament capping // inferred from direct assay 5884 // actin filament // inferred from physical interaction /// 8290 // F-actin capping protein complex // inferred from genetic interaction /// 8290 // F-actin capping protein complex // inferred from direct assay /// 8290 // F-actin capping protein complex // inferred from mutant phenotype /// 8290 // F-actin capping protein complex // inferred from sequence similarity /// 8290 // F-actin capping protein complex // inferred from physical interaction /// 30479 // actin cortical patch // inferred from direct assay 51015 // actin filament binding // inferred from genetic interaction /// 51015 // actin filament binding // inferred from sequence similarity /// 51015 // actin filament binding // inferred from physical interaction /// 51015 // actin filament binding // inferred from mutant phenotype 1425.34338378906 890.461669921875 1106.35083007813 1468.55651855469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL034C /GEN=CAP2 /DB_XREF=GI:6322155 /SEG=NC_001141:-289225,290088 /DEF=capping - addition of actin subunits /NOTE=Cap2p; go_component: F-actin capping protein complex [goid GO:0008290] [evidence IDA] [pmid 9153752]; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10652251]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 1315784]; go_process: actin filament organization [goid GO:0007015] [evidence IMP] [pmid 9153752]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IPI] [pmid 10652251]; go_process: endocytosis [goid GO:0006897] [evidence IPI] [pmid 10652251]; go_process: response to osmotic stress [goid GO:0006970] [evidence IMP] [pmid 10652251] --- --- --- --- --- --- S0001296 // CAP2 SGDID:S0001296, Chr IX from 290088-289225, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016451 // cdna:Genscan chromosome:SGD1:IX:289225:290088:-1 // ensembl // 11 // --- /// YIL034C // cdna:known chromosome:SGD1:IX:289225:290088:-1 gene:YIL034C // ensembl // 11 // --- --- No cerevisiae_gene -1.25926029378681 -1.60067909931948 1.05498032657803 -1.28832857086428 1.03031770116388 Max fold change below threshold 4 1.60067909931948 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772500_at YDR276C.S1 Small plasma membrane protein related to a family of plant polypeptides that are overexpressed under high salt concentration or low temperature, not essential for viability, deletion causes hyperpolarization of the plasma membrane potential 1.60036101531313 7831.36450195313 5496.30444335938 PMP3 6812 // cation transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay --- 6212.9462890625 9942.95703125 5719.77197265625 4779.66259765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR276C /GEN=PMP3 /DB_XREF=GI:6320482 /SEG=NC_001136:-1013468,1013635 /DEF=plasma membrane protein involved in salt tolerance /NOTE=Pmp3p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 10835350]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cation transport [goid GO:0006812] [evidence IMP] [pmid 10835350] --- --- --- --- --- S0002684 // span:7-26,31-53 // numtm:2 S0002684 // PMP3 SGDID:S0002684, Chr IV from 1013637-1013470, reverse complement, Verified ORF // sgd // 11 // --- /// YDR276C // cdna:known chromosome:SGD1:IV:1013470:1013637:-1 gene:YDR276C // ensembl // 11 // --- --- No cerevisiae_gene -1.46327011029627 1.60036101531313 -1.1867860891337 -1.086222723347 -1.29987131144133 Max fold change below threshold 4 1.60036101531313 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778728_at YDR003W.S1 Endoplasmic reticulum membrane protein with similarity to Rcr1p; C-terminal region can functionally replace the corresponding region of Rcr1p in conferring Congo Red resistance when overexpressed 1.60032711053077 2072.25201416016 1297.25250244141 RCR2 --- 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity --- 1313.28649902344 2101.68798828125 2042.81604003906 1281.21850585938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR003W /GEN=YRB1 /DB_XREF=GI:6320206 /SEG=NC_001136:+454119,454751 /DEF=Endoplasmic reticulum membrane protein with similarity to Rcr1p; C-terminal region can functionally replace the corresponding region of Rcr1p in conferring Congo Red resistance when overexpressed /NOTE=Ydr003wp --- --- --- --- --- S0002410 // span:37-59 // numtm:1 S0002410 // RCR2 SGDID:S0002410, Chr IV from 454119-454751, Uncharacterized ORF // sgd // 11 // --- /// YDR003W // cdna:known chromosome:SGD1:IV:454119:454751:1 gene:YDR003W // ensembl // 11 // --- GENEFINDER00000023933 // ensembl // 8 // Cross Hyb Matching Probes /// GENSCAN00000025101 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.02232808291254 1.60032711053077 1.3168376687965 1.55549915540753 -1.02502929283132 Max fold change below threshold 4 1.60032711053077 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777486_at YBR256C.S1 Riboflavin synthase; catalyzes the last step of the riboflavin biosynthesis pathway 1.60021817089983 2029.37097167969 1541.46856689453 RIB5 9231 // riboflavin biosynthesis // inferred from mutant phenotype 5625 // soluble fraction // inferred from direct assay 4746 // riboflavin synthase activity // inferred from direct assay /// 4746 // riboflavin synthase activity // inferred from sequence similarity 1493.68640136719 1889.42944335938 2169.3125 1589.25073242188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR256C /GEN=RIB5 /DB_XREF=GI:6319733 /SEG=NC_001134:-727343,728059 /DEF=Riboflavin biosynthesis /NOTE=Rib5p; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 7814407]; go_function: riboflavin synthase activity [goid GO:0004746] [evidence IDA,ISS] [pmid 7814407]; go_process: vitamin B2 biosynthesis [goid GO:0009231] [evidence IMP] [pmid 7814407] --- --- --- --- --- --- S0000460 // RIB5 SGDID:S0000460, Chr II from 728097-727381, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021345 // cdna:Genscan chromosome:SGD1:II:727381:728097:-1 // ensembl // 11 // --- /// GENEFINDER00000022245 // cdna:GeneFinder chromosome:SGD1:II:727381:728097:-1 // ensembl // 11 // --- /// YBR256C // cdna:known chromosome:SGD1:II:727381:728097:-1 gene:YBR256C // ensembl // 11 // --- --- No cerevisiae_gene 1.60021817089983 1.26494386079297 1.20193181276759 1.45232124896793 1.06397884520286 Max fold change below threshold 4 1.60021817089983 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770899_at YNL167C.S1 Basic leucine zipper (bZIP) transcription factor of the ATF/CREB family that forms a complex with Tup1p and Ssn6p to both activate and repress transcription; cytosolic and nuclear protein involved in the osmotic and oxidative stress responses 1.59983602481176 629.803283691406 935.1708984375 SKO1 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 3702 // RNA polymerase II transcription factor activity // inferred from mutant phenotype /// 3702 // RNA polymerase II transcription factor activity // inferred from sequence similarity /// 3702 // RNA polymerase II transcription factor activity // inferred from physical interaction 912.654113769531 570.46728515625 689.139282226563 957.687683105469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL167C /GEN=SKO1 /DB_XREF=GI:6324162 /SEG=NC_001146:-319416,321359 /DEF=Basic leucine zipper (bZIP) transcriptional factor of the ATF/CREB family, involved in both positive and negative transcriptional regulation of genes involved in the osmotic and oxidative stress responses /NOTE=Sko1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 11500510]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11500510]; go_function: RNA polymerase II transcription factor activity [goid GO:0003702] [evidence IMP,IPI,ISS] [pmid 1437546]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IMP] [pmid 1437546] --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 0.00800000037997961 --- S0005111 // SKO1 SGDID:S0005111, Chr XIV from 321359-319416, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019905 // cdna:Genscan chromosome:SGD1:XIV:319416:321359:-1 // ensembl // 11 // --- /// GENEFINDER00000020402 // cdna:GeneFinder chromosome:SGD1:XIV:319416:320756:-1 // ensembl // 11 // --- /// YNL167C // cdna:known chromosome:SGD1:XIV:319416:321359:-1 gene:YNL167C // ensembl // 11 // --- --- No cerevisiae_gene -1.58464811320165 -1.59983602481176 1.0380595769724 -1.32433912462631 1.04934352308996 Max fold change below threshold 4 1.59983602481176 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773721_at YBL006C.S1 Protein of unknown function; null mutant shows a reduced affinity for the alcian blue dye suggesting a decreased net negative charge of the cell surface 1.59975689533137 808.170135498047 563.450653076172 LDB7 32 // cell wall mannoprotein biosynthesis // inferred from mutant phenotype --- --- 526.182739257813 774.575805664063 841.764465332031 600.718566894531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL006C /GEN=LDB7 /DB_XREF=GI:41629675 /SEG=NC_001134:-216552,217094 /DEF=The deletion strain shows a reduced affinity by the alcian blue dye, which suggests a reduction in the net negative charge of the cell surface /NOTE=Ldb7p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall mannoprotein biosynthesis [goid GO:0000032] [evidence IMP] [pmid 14587103] --- --- --- --- --- --- S0000102 // LDB7 SGDID:S0000102, Chr II from 217132-216590, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000022222 // cdna:GeneFinder chromosome:SGD1:II:216590:217132:-1 // ensembl // 10 // --- /// YBL006C // cdna:known chromosome:SGD1:II:216590:217132:-1 gene:YBL006C // ensembl // 10 // --- YBL006W-A // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene -1.47800757350089 1.472066162331 1.59036329752842 1.59975689533137 1.14165388196096 Max fold change below threshold 4 1.59975689533137 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775675_at SPAC664.11.S1 --- 1.59970918866318 --- --- --- --- 5.09283447265625 7.45170402526855 7.17036724090576 5.15066957473755 0.366210997104645 0.00195312988944352 0.0461426004767418 0.12548828125 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC664.11 /GEN=ssc1 /DEF=heat shock protein 70 family (PMID 2123810) --- --- --- --- --- --- M60208 // S.pombe mitochondrial heat shock protein (HSP70) mRNA, complete cds. // gb // 11 // --- /// SPAC664.11 // |ssc1|ssp1|heat shock protein 70 family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.59970918866318 1.46317420392852 -1.17061489667729 1.40793251369231 1.01135617157632 Max fold change below threshold 4 1.59970918866318 Max fold change below threshold AAPAPA No 3 0 APPA 2 2 0 No No 1 < x = 2
1770747_at YOL061W.S1 5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, involved in nucleotide, histidine, and tryptophan biosynthesis; one of a five related enzymes, which are active as heteromultimeric complexes 1.59951762945825 1036.93658447266 1277.58850097656 PRS5 105 // histidine biosynthesis // traceable author statement /// 162 // tryptophan biosynthesis // traceable author statement /// 6166 // purine ribonucleoside salvage // traceable author statement /// 6189 // 'de novo' IMP biosynthesis // traceable author statement /// 6207 // 'de novo' pyrimidine base biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 4749 // ribose-phosphate diphosphokinase activity // traceable author statement 1271.978515625 795.226318359375 1278.64685058594 1283.19848632813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL061W /GEN=PRS5 /DB_XREF=GI:6324511 /SEG=NC_001147:+212243,213733 /DEF=5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, involved in nucleotide, histidine, and tryptophan biosynthesis; one of a five related enzymes, which are active as heteromultimeric complexes /NOTE=Prs5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: ribose-phosphate diphosphokinase activity [goid GO:0004749] [evidence TAS] [pmid 10212224]; go_process: 'de novo' IMP biosynthesis [goid GO:0006189] [evidence TAS] [pmid 10212224]; go_process: 'de novo' pyrimidine base biosynthesis [goid GO:0006207] [evidence TAS] [pmid 10212224]; go_process: histidine biosynthesis [goid GO:0000105] [evidence TAS] [pmid 10212224]; go_process: purine ribonucleoside salvage [goid GO:0006166] [evidence TAS] [pmid 10212224]; go_process: tryptophan biosynthesis [goid GO:0000162] [evidence TAS] [pmid 10212224] --- --- --- --- --- --- S0005422 // PRS5 SGDID:S0005422, Chr XV from 212243-213733, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022863 // cdna:GeneFinder chromosome:SGD1:XV:212243:213733:1 // ensembl // 11 // --- /// GENSCAN00000017419 // cdna:Genscan chromosome:SGD1:XV:212249:213733:1 // ensembl // 11 // --- /// YOL061W // cdna:known chromosome:SGD1:XV:212243:213733:1 gene:YOL061W // ensembl // 11 // --- --- No cerevisiae_gene 1.28441970708772 -1.59951762945825 1.08468713387885 1.00524249024573 1.00882088067157 Max fold change below threshold 4 1.59951762945825 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778082_at SPBC56F2.09c.S1 --- 1.59930700500614 --- --- --- --- 7.10320949554443 4.44142961502075 9.93960857391357 6.91596412658691 0.0805663987994194 0.334473013877869 0.000244141003349796 0.0561522990465164 A A P M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC56F2.09c /GEN=arg5 /DEF=carbamoyl-phosphate synthase (predicted) --- --- --- --- --- --- SPBC56F2.09c // |arg5||carbamoyl-phosphate synthase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.22569793109668 -1.59930700500614 1.18379056570969 1.39931232214794 -1.0270743696078 Max fold change below threshold 4 1.59930700500614 Max fold change below threshold AAAPPM No 3 0 AAPM 2 1 1 No No x = 1
1771766_at YLR244C.S1 Methionine aminopeptidase, catalyzes the cotranslational removal of N-terminal methionine from nascent polypeptides; function is partially redundant with that of Map2p 1.59928086373179 795.724212646484 1171.2646484375 MAP1 6508 // proteolysis and peptidolysis // inferred from direct assay 5830 // cytosolic ribosome (sensu Eukaryota) // inferred from direct assay 4239 // methionyl aminopeptidase activity // inferred from direct assay 1168.90026855469 730.891174316406 860.557250976563 1173.62902832031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR244C /GEN=MAP1 /DB_XREF=GI:6323273 /SEG=NC_001144:-625170,626333 /DEF=methionine aminopeptidase /NOTE=Map1p; go_component: cytosolic ribosome (sensu Eukarya) [goid GO:0005830] [evidence IDA] [pmid 11968008]; go_function: methionyl aminopeptidase activity [goid GO:0004239] [evidence IDA] [pmid 11811952]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence IDA] [pmid 11811952] --- --- --- --- --- --- S0004234 // MAP1 SGDID:S0004234, Chr XII from 626333-625170, reverse complement, Verified ORF // sgd // 11 // --- /// M77092 // Saccharomyces cerevisiae methionine aminopeptidase I (MAP1) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000018009 // cdna:Genscan chromosome:SGD1:XII:625170:626333:-1 // ensembl // 11 // --- /// GENEFINDER00000024623 // cdna:GeneFinder chromosome:SGD1:XII:625170:626231:-1 // ensembl // 11 // --- /// YLR244C // cdna:known chromosome:SGD1:XII:625170:626333:-1 gene:YLR244C // ensembl // 11 // --- --- No cerevisiae_gene 1.17617167996553 -1.59928086373179 1.07359608990781 -1.35830622219291 1.00404547752519 Max fold change below threshold 4 1.59928086373179 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773409_at YPL077C.S1 Hypothetical protein 1.59901446863998 62.0625152587891 85.8738784790039 --- --- --- --- 79.1991882324219 49.6042633056641 74.5207672119141 92.5485687255859 0.000732421991415322 0.00195312988944352 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL077C /GEN=ATP4 /DB_XREF=GI:6325180 /SEG=NC_001148:-409363,410085 /DEF=Hypothetical ORF /NOTE=Ypl077cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005998 // YPL077C SGDID:S0005998, Chr XVI from 410087-409365, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000017129 // cdna:Genscan chromosome:SGD1:XVI:409365:410087:-1 // ensembl // 10 // --- /// GENEFINDER00000020996 // cdna:GeneFinder chromosome:SGD1:XVI:409365:410087:-1 // ensembl // 10 // --- /// YPL077C // cdna:known chromosome:SGD1:XVI:409365:410087:-1 gene:YPL077C // ensembl // 10 // --- --- No cerevisiae_gene 1.39099544967457 -1.5966205917502 1.59901446863998 -1.06278009735466 1.16855451161934 Max fold change below threshold 4 1.59901446863998 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780163_at YIR017C.S1 Transcriptional activator in the Cbf1p-Met4p-Met28p complex, participates in the regulation of sulfur metabolism 1.59884468485033 690.56689453125 466.191497802734 MET28 97 // sulfur amino acid biosynthesis // traceable author statement /// 6357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 42762 // regulation of sulfur metabolism // inferred from direct assay 5634 // nucleus // traceable author statement /// 5634 // nucleus // inferred from direct assay 3677 // DNA binding // inferred from direct assay /// 3704 // specific RNA polymerase II transcription factor activity // traceable author statement /// 16563 // transcriptional activator activity // traceable author statement 473.905120849609 757.70068359375 623.43310546875 458.477874755859 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR017C /GEN=MET28 /DB_XREF=GI:6322207 /SEG=NC_001141:-383553,384116 /DEF=Transcriptional activator in the Cbf1p-Met4p-Met28p complex, participates in the regulation of sulfur metabolism /NOTE=Met28p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 8665859]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 8665859]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence TAS] [pmid 8665859]; go_function: transcriptional activator activity [goid GO:0016563] [evidence TAS] [pmid 10637232]; go_process: regulation of sulfur metabolism [goid GO:0042762] [evidence IDA] [pmid 8665859]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence TAS] [pmid 8665859]; go_process: sulfur amino acid biosynthesis [goid GO:0000097] [evidence TAS] [pmid 9409150] --- --- --- --- --- --- S0001456 // MET28 SGDID:S0001456, Chr IX from 384116-383553, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016488 // cdna:Genscan chromosome:SGD1:IX:383553:384116:-1 // ensembl // 11 // --- /// GENEFINDER00000019108 // cdna:GeneFinder chromosome:SGD1:IX:383553:384116:-1 // ensembl // 11 // --- /// YIR017C // cdna:known chromosome:SGD1:IX:383553:384116:-1 gene:YIR017C // ensembl // 11 // --- YIR017W-A // ensembl // 11 // Negative Strand Matching Probes No cerevisiae_gene 1.34737315652863 1.59884468485033 -1.00018639666331 1.31552304045812 -1.03364883442187 Max fold change below threshold 4 1.59884468485033 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770855_at YMR156C.S1 DNA 3'-phosphatase that functions in repair of endogenous damage of double-stranded DNA, activity is specific for removal of 3' phosphates at strand breaks; has similarity to the l-2-haloacid dehalogenase superfamily 1.59869126196134 410.446472167969 464.595794677734 TPP1 6281 // DNA repair // inferred from direct assay /// 6281 // DNA repair // inferred from mutant phenotype --- 46403 // polynucleotide 3'-phosphatase activity // inferred from direct assay /// 46403 // polynucleotide 3'-phosphatase activity // traceable author statement 464.333129882813 374.566558837891 446.326385498047 464.858459472656 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR156C /GEN=TPP1 /DB_XREF=GI:6323806 /SEG=NC_001145:-570299,571015 /DEF=DNA 3'-phosphatase that functions in the repair of endogenous DNA damage; functionally redundant with Apn1p and Apn2p /NOTE=Tpp1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: polynucleotide 3'-phosphatase activity [goid GO:0046403] [evidence IDA,TAS] [pmid 12783866]; go_process: DNA repair [goid GO:0006281] [evidence IDA,IMP] [pmid 12783866] --- --- --- --- --- --- S0004765 // TPP1 SGDID:S0004765, Chr XIII from 571015-570299, reverse complement, Verified ORF // sgd // 11 // --- /// YMR156C // cdna:known chromosome:SGD1:XIII:570299:571015:-1 gene:YMR156C // ensembl // 11 // --- --- No cerevisiae_gene 1.18354353009096 -1.23965452581626 1.59869126196134 -1.04034434209995 1.00113136357506 Max fold change below threshold 4 1.59869126196134 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774529_at YGR062C.S1 Mitochondrial inner membrane protein, required for export of the Cox2p C terminus from the mitochondrial matrix to the intermembrane space during its assembly into cytochrome c oxidase; similar to Oxa2p of N. crassa 1.59815641590122 493.921661376953 816.252563476563 COX18 8535 // cytochrome c oxidase complex assembly // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay /// 16021 // integral to membrane // inferred from direct assay 8565 // protein transporter activity // inferred from mutant phenotype 776.303649902344 485.749481201172 502.093841552734 856.201477050781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR062C /GEN=COX18 /DB_XREF=GI:6321499 /SEG=NC_001139:-616330,617280 /DEF=Mitochondrial inner membrane protein, required for export of the Cox2p C terminus from the mitochondrial matrix to the intermembrane space during its assembly into cytochrome c oxidase; similar to Oxa2p of N.crassa /NOTE=Cox18p; go_component: integral to membrane [goid GO:0016021] [evidence IDA] [pmid 10809734]; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 11950926]; go_function: molecular_function unknown [goid GO:0005554] [evidence IMP] [pmid 10809734]; go_process: cytochrome c oxidase biogenesis [goid GO:0008535] [evidence IMP] [pmid 10809734] --- --- --- --- --- S0003294 // span:159-181,215-234,274-296 // numtm:3 S0003294 // COX18 SGDID:S0003294, Chr VII from 617282-616332, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019389 // cdna:Genscan chromosome:SGD1:VII:616332:617282:-1 // ensembl // 11 // --- /// YGR062C // cdna:known chromosome:SGD1:VII:616332:617282:-1 gene:YGR062C // ensembl // 11 // --- --- No cerevisiae_gene 1.07796479255889 -1.59815641590122 1.18396827916499 -1.54613258649341 1.10292084438671 Max fold change below threshold 4 1.59815641590122 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777234_at YGR119C.S1 Essential subunit of the nuclear pore complex (NPC), functions as the organizing center of an NPC subcomplex containing Nsp1p, Nup49p, Nup57p, and Nic96p 1.59814632226289 668.437072753906 736.641723632813 NUP57 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6606 // protein-nucleus import // inferred from mutant phenotype /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6999 // nuclear pore organization and biogenesis // traceable author statement 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement 688.177429199219 650.8818359375 685.992309570313 785.106018066406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR119C /GEN=NUP57 /DB_XREF=GI:6321557 /SEG=NC_001139:-728049,729674 /DEF=Essential subunit of the nuclear pore complex (NPC), functions as the organizing center of an NPC subcomplex containing Nsp1p, Nup49p, Nup57p, and Nic96p /NOTE=Nup57p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus import [goid GO:0006606] [evidence IMP] [pmid 9442897]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0003351 // NUP57 SGDID:S0003351, Chr VII from 729676-728051, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019432 // cdna:Genscan chromosome:SGD1:VII:728051:729676:-1 // ensembl // 11 // --- /// GENEFINDER00000021553 // cdna:GeneFinder chromosome:SGD1:VII:728051:729676:-1 // ensembl // 11 // --- /// YGR119C // cdna:known chromosome:SGD1:VII:728051:729676:-1 gene:YGR119C // ensembl // 11 // --- --- No cerevisiae_gene 1.59814632226289 -1.05730009842416 1.02441982992788 -1.00318534129089 1.1408482533058 Max fold change below threshold 4 1.59814632226289 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772928_at YLR098C.S1 Zinc-finger protein with Zn[2]-Cys[6] fungal-type binuclear cluster domain; DNA-binding transcriptional activator or CHA1 1.59803829515394 269.632675170898 308.388336181641 CHA4 6355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 9063 // amino acid catabolism // inferred from genetic interaction /// 9063 // amino acid catabolism // inferred from mutant phenotype 5634 // nucleus // inferred from physical interaction 3700 // transcription factor activity // inferred from physical interaction /// 3700 // transcription factor activity // inferred from direct assay /// 3700 // transcription factor activity // inferred from sequence similarity 284.718017578125 273.490112304688 265.775238037109 332.058654785156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR098C /GEN=CHA4 /DB_XREF=GI:6323127 /SEG=NC_001144:-337528,339474 /DEF=Zinc-finger protein with Zn[2]-Cys[6] fungal-type binuclear cluster domain /NOTE=Cha4p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 8889513]; go_function: transcription factor activity [goid GO:0003700] [evidence IDA,IPI,ISS] [pmid 8889513]; go_process: amino acid catabolism [goid GO:0009063] [evidence IGI,IMP] [pmid 8889513]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence IMP] [pmid 8889513] --- --- --- --- scop // a.4.5.CAP C-terminal domain-like // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; CAP C-terminal domain-like // 7.40000009536743 --- S0004088 // CHA4 SGDID:S0004088, Chr XII from 339474-337528, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017895 // cdna:Genscan chromosome:SGD1:XII:337528:339474:-1 // ensembl // 11 // --- /// GENEFINDER00000024599 // cdna:GeneFinder chromosome:SGD1:XII:337528:340929:-1 // ensembl // 11 // --- /// YLR098C // cdna:known chromosome:SGD1:XII:337528:339474:-1 gene:YLR098C // ensembl // 11 // --- --- No cerevisiae_gene -1.32767935462901 -1.04105415431227 1.59803829515394 -1.07127368102807 1.16627201049558 Max fold change below threshold 4 1.59803829515394 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778484_at SPAC27F1.05c.S1 --- 1.59794083559701 --- --- --- --- 8.37675094604492 10.2293519973755 13.385552406311 9.77269458770752 0.24609400331974 0.125244140625 0.0805663987994194 0.0239257998764515 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27F1.05c /DEF=aminotransferase (predicted) --- --- --- --- --- --- SPAC27F1.05c // |||aminotransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.10658505957857 1.22115985819123 -1.05949089516032 1.59794083559701 1.16664499764335 Max fold change below threshold 4 1.59794083559701 Max fold change below threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1772876_at YGL022W.S1 Subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes asparagine-linked glycosylation of newly synthesized proteins; forms a subcomplex with Ost3p and Ost4p and is directly involved in catalysis 1.59791553490379 1104.67272949219 1583.03491210938 STT3 6487 // N-linked glycosylation // inferred from physical interaction 8250 // oligosaccharyl transferase complex // inferred from physical interaction 4579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from physical interaction 1540.72705078125 964.210571289063 1245.13488769531 1625.3427734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL022W /GEN=STT3 /DB_XREF=GI:6321416 /SEG=NC_001139:+452407,454563 /DEF=Required for protein glycosylation /NOTE=Stt3p; go_component: oligosaccharyl transferase complex [goid GO:0008250] [evidence IPI] [pmid 10358084]; go_function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity [goid GO:0004579] [evidence IPI] [pmid 9405463]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IPI] [pmid 9405463] --- --- --- --- --- S0002990 // span:7-29,79-101,114-131,141-163,170-192,207-229,236-258,268-287,300-322,357-379,386-403,407-429,442-464 // numtm:13 S0002990 // STT3 SGDID:S0002990, Chr VII from 452409-454565, Verified ORF // sgd // 11 // --- /// GENSCAN00000019323 // cdna:Genscan chromosome:SGD1:VII:452409:454565:1 // ensembl // 11 // --- /// GENEFINDER00000021453 // cdna:GeneFinder chromosome:SGD1:VII:452409:454565:1 // ensembl // 11 // --- /// YGL022W // cdna:known chromosome:SGD1:VII:452409:454565:1 gene:YGL022W // ensembl // 11 // --- --- No cerevisiae_gene -1.05972328351069 -1.59791553490379 -1.08663499418571 -1.23739770366009 1.05491934643021 Max fold change below threshold 4 1.59791553490379 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773449_at YEL064C.S1 Putative transporter, member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters 1.59779761920602 83.2922859191895 124.874168395996 AVT2 6810 // transport // inferred from sequence similarity 5783 // endoplasmic reticulum // non-traceable author statement 5215 // transporter activity // inferred from sequence similarity 123.683410644531 89.1758880615234 77.4086837768555 126.064926147461 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL064C /GEN=AVT2 /DB_XREF=GI:6320771 /SEG=NC_001137:-29797,31239 /DEF=Putative transporter, member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters /NOTE=Avt2p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence NAS] [pmid 11274162]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 11274162]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 11274162] --- --- --- --- --- S0000790 // span:73-92,102-124,144-166,186-205,217-239,259-281,294-316,336-358,388-410,414-433,445-467 // numtm:11 S0000790 // AVT2 SGDID:S0000790, Chr V from 31239-29797, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019663 // cdna:GeneFinder chromosome:SGD1:V:29797:31239:-1 // ensembl // 11 // --- /// YEL064C // cdna:known chromosome:SGD1:V:29797:31239:-1 gene:YEL064C // ensembl // 11 // --- --- No cerevisiae_gene 1.02901551201646 -1.38696023480249 1.47745874639575 -1.59779761920602 1.01925493071803 Max fold change below threshold 4 1.59779761920602 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778458_at YKL016C.S1 Subunit d of the stator stalk of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis 1.59773850395651 3414.69226074219 2034.80139160156 ATP7 6461 // protein complex assembly // inferred from mutant phenotype /// 6461 // protein complex assembly // inferred from physical interaction /// 15986 // ATP synthesis coupled proton transport // inferred from mutant phenotype /// 15986 // ATP synthesis coupled proton transport // inferred from sequence similarity 274 // proton-transporting ATP synthase, stator stalk (sensu Eukaryota) // inferred from mutant phenotype /// 274 // proton-transporting ATP synthase, stator stalk (sensu Eukaryota) // traceable author statement /// 274 // proton-transporting ATP synthase, stator stalk (sensu Eukaryota) // inferred from sequence similarity 5198 // structural molecule activity // inferred from mutant phenotype /// 5198 // structural molecule activity // inferred from physical interaction /// 46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // inferred from mutant phenotype 2241.84423828125 3581.880859375 3247.50366210938 1827.75854492188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL016C /GEN=ATP7 /DB_XREF=GI:6322836 /SEG=NC_001143:-407108,407632 /DEF=Subunit d of the stator stalk of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis /NOTE=Atp7p; go_component: proton-transporting ATP synthase, stator stalk (sensu Eukarya) [goid GO:0000274] [evidence TAS] [pmid 10838056]; go_component: proton-transporting ATP synthase, stator stalk (sensu Eukarya) [goid GO:0000274] [evidence IMP,ISS] [pmid 1832157]; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism [goid GO:0046933] [evidence IMP] [pmid 1832157]; go_function: structural molecule activity [goid GO:0005198] [evidence IMP,IPI] [pmid 1832157]; go_process: ATP synthesis coupled proton transport [goid GO:0015986] [evidence IMP,ISS] [pmid 1832157]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP,IPI] [pmid 1832157] --- --- --- --- --- --- S0001499 // ATP7 SGDID:S0001499, Chr XI from 407632-407108, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018406 // cdna:Genscan chromosome:SGD1:XI:407108:407632:-1 // ensembl // 11 // --- /// GENEFINDER00000023089 // cdna:GeneFinder chromosome:SGD1:XI:407108:407632:-1 // ensembl // 11 // --- /// YKL016C // cdna:known chromosome:SGD1:XI:407108:407632:-1 gene:YKL016C // ensembl // 11 // --- --- No cerevisiae_gene -1.07474482606225 1.59773850395651 1.10351987684526 1.44858576999048 -1.22655382709595 Max fold change below threshold 4 1.59773850395651 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777367_at YBR156C.S1 Subunit of the Ipl1p-Sli15p-Bir1p complex that regulates kinetochore-microtubule attachments, activation of the spindle tension checkpoint, and mitotic spindle disassembly; regulates the activity and localization of the Ipl1p aurora kinase 1.59748964531126 117.190296173096 165.776908874512 SLI15 6468 // protein amino acid phosphorylation // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from physical interaction /// 7059 // chromosome segregation // traceable author statement 5828 // kinetochore microtubule // inferred from direct assay /// 5876 // spindle microtubule // inferred from direct assay /// 51233 // spindle midzone // inferred from direct assay 30295 // protein kinase activator activity // inferred from mutant phenotype /// 30295 // protein kinase activator activity // inferred from physical interaction 161.54280090332 129.194320678711 105.18627166748 170.011016845703 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR156C /GEN=SLI15 /DB_XREF=GI:6319632 /SEG=NC_001134:-551060,553156 /DEF=Mitotic spindle protein involved in chromosome segregation. /NOTE=Sli15p; go_component: kinetochore microtubule [goid GO:0005828] [evidence IDA] [pmid 11724818]; go_component: spindle microtubule [goid GO:0005876] [evidence IDA] [pmid 11724818]; go_function: protein kinase activator activity [goid GO:0030295] [evidence IMP,IPI] [pmid 10385519]; go_process: chromosome segregation [goid GO:0007059] [evidence TAS] [pmid 11724818]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IMP,IPI] [pmid 10385519] --- --- --- --- --- --- S0000360 // SLI15 SGDID:S0000360, Chr II from 553194-551098, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021264 // cdna:Genscan chromosome:SGD1:II:551098:551589:-1 // ensembl // 9 // --- /// GENEFINDER00000022108 // cdna:GeneFinder chromosome:SGD1:II:551098:553194:-1 // ensembl // 11 // --- /// YBR156C // cdna:known chromosome:SGD1:II:551098:553194:-1 gene:YBR156C // ensembl // 11 // --- --- No cerevisiae_gene -1.28544108555853 -1.25038624031358 -1.59748964531126 -1.53577837052726 1.05242088099891 Max fold change below threshold 4 1.59748964531126 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777882_at YPL213W.S1 Component of U2 snRNP; disruption causes reduced U2 snRNP levels; physically interacts with Msl1p; putative homolog of human U2A' snRNP protein 1.59726728542232 316.511917114258 243.843200683594 LEA1 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 5686 // snRNP U2 // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 31202 // RNA splicing factor activity, transesterification mechanism // inferred from physical interaction 234.524108886719 258.426147460938 374.597686767578 253.162292480469 0.000732421991415322 0.00292969006113708 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL213W /GEN=LEA1 /DB_XREF=GI:6325043 /SEG=NC_001148:+150613,151329 /DEF=Looks Exceptionally like U2A /NOTE=Lea1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: snRNP U2 [goid GO:0005686] [evidence IDA] [pmid 11804584]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 11804584]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 11804584] --- --- --- --- --- --- S0006134 // LEA1 SGDID:S0006134, Chr XVI from 150613-151329, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020733 // cdna:GeneFinder chromosome:SGD1:XVI:150613:151329:1 // ensembl // 11 // --- /// YPL213W // cdna:known chromosome:SGD1:XVI:150613:151329:1 gene:YPL213W // ensembl // 11 // --- --- No cerevisiae_gene 1.12408720181405 1.10191719174494 1.14063591834674 1.59726728542232 1.07947235651902 Max fold change below threshold 4 1.59726728542232 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770014_at YEL051W.S1 Subunit D of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; plays a role in the coupling of proton transport and ATP hydrolysis 1.59719751782726 1364.31536865234 1863.56573486328 VMA8 7035 // vacuolar acidification // traceable author statement 221 // hydrogen-transporting ATPase V1 domain // traceable author statement /// 329 // vacuolar membrane (sensu Fungi) // traceable author statement 46961 // hydrogen-transporting ATPase activity, rotational mechanism // traceable author statement 1859.80334472656 1164.41662597656 1564.21411132813 1867.328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL051W /GEN=VMA8 /DB_XREF=GI:6320784 /SEG=NC_001137:+58378,59148 /DEF=vacuolar ATPase V1 domain subunit D /NOTE=Vma8p; go_component: hydrogen-transporting ATPase V1 domain [goid GO:0000221] [evidence TAS] [pmid 9442887]; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence TAS] [pmid 11717306]; go_function: hydrogen-transporting ATPase activity, rotational mechanism [goid GO:0046961] [evidence TAS] [pmid 9442887]; go_process: vacuolar acidification [goid GO:0007035] [evidence TAS] [pmid 9442887] --- --- --- --- --- --- S0000777 // VMA8 SGDID:S0000777, Chr V from 58378-59148, Verified ORF // sgd // 11 // --- /// GENSCAN00000016762 // cdna:Genscan chromosome:SGD1:V:58378:59148:1 // ensembl // 11 // --- /// GENEFINDER00000019699 // cdna:GeneFinder chromosome:SGD1:V:58378:59148:1 // ensembl // 11 // --- /// YEL051W // cdna:known chromosome:SGD1:V:58378:59148:1 gene:YEL051W // ensembl // 11 // --- --- No cerevisiae_gene -1.04097783191001 -1.59719751782726 -1.06065977586888 -1.18896980359515 1.00404600857116 Max fold change below threshold 4 1.59719751782726 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772677_at YBR286W.S1 Vacuolar aminopeptidase Y, processed to mature form by Prb1p 1.59697283065888 6680.955078125 6954.3310546875 APE3 7039 // vacuolar protein catabolism // inferred from direct assay 324 // vacuole (sensu Fungi) // inferred from direct assay 4177 // aminopeptidase activity // inferred from mutant phenotype /// 4177 // aminopeptidase activity // inferred from direct assay 8311.8466796875 8157.15869140625 5204.75146484375 5596.8154296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR286W /GEN=APE3 /DB_XREF=GI:6319763 /SEG=NC_001134:+774580,776271 /DEF=Vacuolar aminopeptidase Y, processed to mature form by Prb1p /NOTE=Ape3p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 8175799]; go_function: aminopeptidase activity [goid GO:0004177] [evidence IDA] [pmid 8175799]; go_function: aminopeptidase activity [goid GO:0004177] [evidence IMP] [pmid 8175800]; go_process: vacuolar protein catabolism [goid GO:0007039] [evidence IDA] [pmid 8175799] --- --- --- --- --- --- S0000490 // APE3 SGDID:S0000490, Chr II from 774618-776309, Verified ORF // sgd // 10 // --- /// GENEFINDER00000022410 // cdna:GeneFinder chromosome:SGD1:II:774618:776309:1 // ensembl // 10 // --- /// GENSCAN00000021366 // cdna:Genscan chromosome:SGD1:II:774696:776309:1 // ensembl // 10 // --- /// YBR286W // cdna:known chromosome:SGD1:II:774618:776309:1 gene:YBR286W // ensembl // 10 // --- --- No cerevisiae_gene -1.53552229812438 -1.01896346437936 -1.26770540690852 -1.59697283065888 -1.48510287396624 Max fold change below threshold 4 1.59697283065888 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779835_at YBL040C.S1 Integral membrane protein that binds to the HDEL motif in proteins destined for retention in the endoplasmic reticulum; has a role in maintenance of normal levels of ER-resident proteins 1.59685243396945 865.879974365234 1354.72332763672 ERD2 6621 // protein-ER retention // inferred from genetic interaction 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay 45015 // HDEL sequence binding // inferred from genetic interaction /// 45015 // HDEL sequence binding // inferred from physical interaction /// 45015 // HDEL sequence binding // inferred from mutant phenotype 1302.35986328125 916.180603027344 815.579345703125 1407.08679199219 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL040C /GEN=ERD2 /DB_XREF=GI:6319431 /SEG=NC_001134:-142077,142833 /DEF=Integral membrane protein that binds to the HDEL motif in proteins destined for retention in the endoplasmic reticulum; has a role in maintenance of normal levels of ER-resident proteins /NOTE=Erd2p; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA] [pmid 2194670]; go_function: HDEL sequence binding [goid GO:0045015] [evidence IGI,IMP,IPI] [pmid 2194670]; go_process: protein-ER retention [goid GO:0006621] [evidence IGI] [pmid 2194671] --- --- --- --- --- S0000136 // span:56-78,99-116,152-174,186-205 // numtm:4 S0000136 // ERD2 SGDID:S0000136, Chr II from 142871-142850,142752-142115, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YBL040C // cdna:known chromosome:SGD1:II:142115:142871:-1 gene:YBL040C // ensembl // 11 // --- --- No cerevisiae_gene 1.01033364914126 -1.42150997191804 1.00037088998224 -1.59685243396945 1.08041320349591 Max fold change below threshold 4 1.59685243396945 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774355_at YKL129C.S1 One of two type I myosins; localizes to actin cortical patches; deletion of MYO3 has little effect on growth, but myo3 myo5 double deletion causes severe defects in growth and actin cytoskeleton organization 1.59674553639262 1428.34735107422 1628.99182128906 MYO3 6887 // exocytosis // inferred from mutant phenotype /// 6897 // endocytosis // inferred from mutant phenotype /// 6970 // response to osmotic stress // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 7121 // bipolar bud site selection // inferred from mutant phenotype 30479 // actin cortical patch // inferred from physical interaction 146 // microfilament motor activity // traceable author statement 1680.44018554688 1332.98852539063 1523.70617675781 1577.54345703125 0.000732421991415322 0.00122069998178631 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL129C /GEN=MYO3 /DB_XREF=GI:6322720 /SEG=NC_001143:-196350,200165 /DEF=One of two class-I myosins; localizes to actin cortical patches; deletion of MYO3 has little affect on growth, but myo3 myo5 double deletion causes severe defects in growth and actin cytoskeletion organization /NOTE=Myo3p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IPI] [pmid 10652251]; go_function: microfilament motor activity [goid GO:0000146] [evidence TAS] [pmid 9153752]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 10652251]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 10652251]; go_process: exocytosis [goid GO:0006887] [evidence IMP] [pmid 10652251]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251]; go_process: response to osmotic stress [goid GO:0006970] [evidence IMP] [pmid 10652251] --- --- --- --- --- --- S0001612 // MYO3 SGDID:S0001612, Chr XI from 200165-196350, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018320 // cdna:Genscan chromosome:SGD1:XI:196350:200165:-1 // ensembl // 11 // --- /// GENEFINDER00000023037 // cdna:GeneFinder chromosome:SGD1:XI:196350:200165:-1 // ensembl // 11 // --- /// YKL129C // cdna:known chromosome:SGD1:XI:196350:200165:-1 gene:YKL129C // ensembl // 11 // --- --- No cerevisiae_gene -1.59674553639262 -1.26065615235092 -1.068407442502 -1.10286366963647 -1.06522592329042 Max fold change below threshold 4 1.59674553639262 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778519_at YGR179C.S1 Outer kinetochore protein, required for accurate mitotic chromosome segregation; forms a complex with Mcm21p and Okp1p that binds to centromeres via the CBF3 complex 1.59664656322608 598.931854248047 1002.66961669922 OKP1 7059 // chromosome segregation // inferred from physical interaction 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 817 // COMA complex // inferred from direct assay 5515 // protein binding // inferred from direct assay 937.8310546875 610.488220214844 587.37548828125 1067.50817871094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR179C /GEN=OKP1 /DB_XREF=GI:6321618 /SEG=NC_001139:-853678,854898 /DEF=Outer kinetochore protein, required for accurate mitotic chromosome segregation; forms a complex with Mcm21p and Okp1p that binds to centromeres via the CBF3 complex /NOTE=Okp1p; go_component: COMA complex [goid GO:0000817] [evidence IDA] [pmid 14633972]; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IDA] [pmid 10323865]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 10323865]; go_process: chromosome segregation [goid GO:0007059] [evidence IPI] [pmid 10323865] --- --- --- --- --- --- S0003411 // OKP1 SGDID:S0003411, Chr VII from 854900-853680, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019481 // cdna:Genscan chromosome:SGD1:VII:853680:854834:-1 // ensembl // 11 // --- /// GENEFINDER00000021640 // cdna:GeneFinder chromosome:SGD1:VII:853680:854900:-1 // ensembl // 11 // --- /// YGR179C // cdna:known chromosome:SGD1:VII:853680:854900:-1 gene:YGR179C // ensembl // 11 // --- --- No cerevisiae_gene 1.16106187502538 -1.53619844516813 -1.12529064323764 -1.59664656322608 1.13827343781727 Max fold change below threshold 4 1.59664656322608 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775799_at YDL122W.S1 Ubiquitin-specific protease that removes ubiquitin from ubiquitinated proteins; cleaves at the C terminus of ubiquitin fusions irrespective of their size; capable of cleaving polyubiquitin chains 1.59661685280157 1394.77667236328 2030.57489013672 UBP1 16579 // protein deubiquitination // traceable author statement 5737 // cytoplasm // inferred from curator /// 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay 4843 // ubiquitin-specific protease activity // inferred from direct assay 2008.62780761719 1258.05249023438 1531.50085449219 2052.52197265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL122W /GEN=UBP1 /DB_XREF=GI:6320081 /SEG=NC_001136:+242552,244981 /DEF=Ubiquitin-specific protease that removes ubiquitin from ubiquitinated proteins; cleaves at the C terminus of ubiquitin fusions irrespective of their size; capable of cleaving polyubiquitin chains /NOTE=Ubp1p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 1429680]; go_function: ubiquitin-specific protease activity [goid GO:0004843] [evidence IDA] [pmid 1429680]; go_process: protein deubiquitination [goid GO:0016579] [evidence TAS] [pmid 8982460] --- --- --- --- --- S0002280 // span:34-51 // numtm:1 S0002280 // UBP1 SGDID:S0002280, Chr IV from 242552-244981, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023894 // cdna:GeneFinder chromosome:SGD1:IV:242750:244981:1 // ensembl // 11 // --- /// GENSCAN00000025007 // cdna:Genscan chromosome:SGD1:IV:242750:244981:1 // ensembl // 11 // --- /// YDL122W // cdna:known chromosome:SGD1:IV:242552:244981:1 gene:YDL122W // ensembl // 11 // --- --- No cerevisiae_gene 1.27849677286321 -1.59661685280157 -1.12536872702413 -1.31154207438115 1.02185281159237 Max fold change below threshold 4 1.59661685280157 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772437_at SPAC22A12.12c.S1 --- 1.59613125980238 --- --- --- --- 3.02161765098572 2.90360474586487 4.28236484527588 2.26587796211243 0.35888671875 0.366210997104645 0.303710997104645 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC22A12.12c /DEF=exosome (RNase complex) (predicted) --- --- --- --- --- --- SPAC22A12.12c // |||exosome |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.59613125980238 -1.04064358459564 -1.16283202680933 1.41724246410822 -1.33353062323301 Max fold change below threshold 3 1.59613125980238 Max fold change below threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777368_at YMR292W.S1 Evolutionarily conserved non-essential protein present in early Golgi cisternae that may be involved in ER-Golgi transport at a step after vesicle tethering to Golgi membranes, exhibits membrane topology similar to that of Sft2p 1.59609056861962 1400.97467041016 2194.16845703125 GOT1 6888 // ER to Golgi transport // inferred from mutant phenotype /// 6895 // Golgi to endosome transport // inferred from mutant phenotype 139 // Golgi membrane // inferred from direct assay --- 2165.34838867188 1445.29174804688 1356.65759277344 2222.98852539063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR292W /GEN=GOT1 /DB_XREF=GI:6323949 /SEG=NC_001145:+854794,855292 /DEF=Golgi Transport /NOTE=Got1p; go_component: Golgi membrane [goid GO:0000139] [evidence IDA] [pmid 10406798]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 10406798]; go_process: Golgi to endosome transport [goid GO:0006895] [evidence IMP] [pmid 10406798] --- --- --- --- --- S0004906 // span:9-28,32-49,66-88 // numtm:3 S0004906 // GOT1 SGDID:S0004906, Chr XIII from 854794-854815,854898-855292, intron sequence removed, Verified ORF // sgd // 11 // --- /// YMR292W // cdna:known chromosome:SGD1:XIII:854794:855292:1 gene:YMR292W // ensembl // 11 // --- --- No cerevisiae_gene -1.03841638599593 -1.49820850468292 -1.2224059198555 -1.59609056861962 1.02661933618641 Max fold change below threshold 4 1.59609056861962 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776857_at YMR296C.S1 Component of serine palmitoyltransferase, responsible along with Lcb2p for the first committed step in sphingolipid synthesis, which is the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine 1.59595877237935 1467.70440673828 1821.70330810547 LCB1 30148 // sphingolipid biosynthesis // traceable author statement 5624 // membrane fraction // inferred from direct assay /// 5792 // microsome // inferred from physical interaction /// 17059 // serine C-palmitoyltransferase complex // inferred from mutant phenotype 4758 // serine C-palmitoyltransferase activity // inferred from direct assay 1847.49853515625 1310.78100585938 1624.62780761719 1795.90808105469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR296C /GEN=LCB1 /DB_XREF=GI:6323954 /SEG=NC_001145:-859214,860890 /DEF=Serine palmitoyltransferase catalyses the committed step in sphingolipid synthesis, the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine. /NOTE=Lcb1p; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 10713067]; go_component: microsome [goid GO:0005792] [evidence IPI] [pmid 10713067]; go_component: serine C-palmitoyltransferase complex [goid GO:0017059] [evidence IMP] [pmid 1556076]; go_function: serine C-palmitoyltransferase activity [goid GO:0004758] [evidence IDA] [pmid 1556076]; go_process: sphingolipid biosynthesis [goid GO:0030148] [evidence TAS] [pmid 12185836] --- --- --- --- --- --- S0004911 // LCB1 SGDID:S0004911, Chr XIII from 860890-859214, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018963 // cdna:Genscan chromosome:SGD1:XIII:859214:860890:-1 // ensembl // 11 // --- /// GENEFINDER00000021811 // cdna:GeneFinder chromosome:SGD1:XIII:859214:860890:-1 // ensembl // 11 // --- /// YMR296C // cdna:known chromosome:SGD1:XIII:859214:860890:-1 gene:YMR296C // ensembl // 11 // --- --- No cerevisiae_gene 1.59595877237935 -1.40946392028697 -1.30978586859604 -1.13718263745956 -1.02872666738671 Max fold change below threshold 4 1.59595877237935 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779763_at YJR141W.S1 Protein required for cell viability 1.59594001730689 202.053352355957 159.936828613281 --- 6397 // mRNA processing // inferred from physical interaction --- --- 135.757949829102 187.445159912109 216.661544799805 184.115707397461 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR141W /GEN=HIR3 /DB_XREF=GI:6322601 /SEG=NC_001142:+695821,696864 /DEF=Protein required for cell viability /NOTE=Yjr141wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mRNA processing [goid GO:0006397] [evidence IPI] [pmid 14690591] --- --- --- --- --- --- S0003902 // YJR141W SGDID:S0003902, Chr X from 695821-696864, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024245 // cdna:Genscan chromosome:SGD1:X:695821:696864:1 // ensembl // 11 // --- /// YJR141W // cdna:known chromosome:SGD1:X:695821:696864:1 gene:YJR141W // ensembl // 11 // --- --- No cerevisiae_gene 1.41621897996782 1.38073063233552 1.54090380467286 1.59594001730689 1.35620571487146 Max fold change below threshold 4 1.59594001730689 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779105_at YLR258W.S1 Glycogen synthase, similar to Gsy1p; expression induced by glucose limitation, nitrogen starvation, heat shock, and stationary phase; activity regulated by cAMP-dependent, Snf1p and Pho85p kinases as well as by the Gac1p-Glc7p phosphatase 1.59545831040541 2383.05725097656 2033.45281982422 GSY2 5977 // glycogen metabolism // inferred from mutant phenotype /// 5977 // glycogen metabolism // inferred from sequence similarity /// 5977 // glycogen metabolism // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay 4373 // glycogen (starch) synthase activity // inferred from mutant phenotype /// 4373 // glycogen (starch) synthase activity // inferred from genetic interaction /// 4373 // glycogen (starch) synthase activity // inferred from sequence similarity 2025.90563964844 1935.86987304688 2830.24462890625 2041 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR258W /GEN=GSY2 /DB_XREF=GI:6323287 /SEG=NC_001144:+660718,662835 /DEF=Glycogen synthase, similar to Gsy1p; expression induced by glucose limitation, nitrogen starvation, heat shock, and stationary phase; activity regulated by cAMP-dependent, Snf1p and Pho85p kinases as well as by the Gac1p-Glc7p phosphatase /NOTE=Gsy2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: glycogen (starch) synthase activity [goid GO:0004373] [evidence IGI,IMP,ISS] [pmid 1908457]; go_process: glycogen metabolism [goid GO:0005977] [evidence IGI,IMP,ISS] [pmid 1908457] --- --- --- --- --- --- S0004248 // GSY2 SGDID:S0004248, Chr XII from 660718-662835, Verified ORF // sgd // 11 // --- /// GENSCAN00000018021 // cdna:Genscan chromosome:SGD1:XII:660718:662835:1 // ensembl // 11 // --- /// GENEFINDER00000024560 // cdna:GeneFinder chromosome:SGD1:XII:660718:662835:1 // ensembl // 11 // --- /// YLR258W // cdna:known chromosome:SGD1:XII:660718:662835:1 gene:YLR258W // ensembl // 11 // --- --- No cerevisiae_gene -1.59545831040541 -1.04650920387529 1.04079621991009 1.39702687702542 1.00745067295147 Max fold change below threshold 4 1.59545831040541 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777606_at YHR107C.S1 Component of the septin ring of the mother-bud neck that is required for cytokinesis; septins recruit proteins to the neck and can act as a barrier to diffusion at the membrane, and they comprise the 10nm filaments seen with EM 1.59514629484838 632.562927246094 456.192535400391 CDC12 747 // conjugation with cellular fusion // traceable author statement /// 902 // cellular morphogenesis // traceable author statement /// 910 // cytokinesis // traceable author statement /// 7047 // cell wall organization and biogenesis // traceable author statement /// 7120 // axial bud site selection // traceable author statement /// 7121 // bipolar bud site selection // traceable author statement /// 30468 // establishment of cell polarity (sensu Fungi) // traceable author statement 144 // septin ring (sensu Saccharomyces) // traceable author statement /// 5737 // cytoplasm // inferred from direct assay 3924 // GTPase activity // inferred from direct assay /// 5200 // structural constituent of cytoskeleton // traceable author statement /// 5545 // phosphatidylinositol binding // inferred from direct assay 445.113403320313 555.104858398438 710.02099609375 467.271667480469 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR107C /GEN=CDC12 /DB_XREF=GI:6321899 /SEG=NC_001140:-326815,328038 /DEF=Component of the septin ring of the mother-bud neck that is required for cytokinesis; septins recruit proteins to the neck and can act as a barrier to diffusion at the membrane, and they comprise the 10nm filaments seen with EM /NOTE=Cdc12p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: septin ring (sensu Saccharomyces) [goid GO:0000144] [evidence TAS] [pmid 8791410]; go_function: phosphatidylinositol binding [goid GO:0005545] [evidence IDA] [pmid 12665577]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence TAS] [pmid 8791410]; go_process: axial budding [goid GO:0007120] [evidence TAS] [pmid 9891811]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence TAS] [pmid 8791410]; go_process: cellular morphogenesis [goid GO:0000902] [evidence TAS] [pmid 8791410]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence TAS] [pmid 8791410]; go_process: cytokinesis [goid GO:0000910] [evidence TAS] [pmid 8791410]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence TAS] [pmid 8791410]; go_process: polar budding [goid GO:0007121] [evidence TAS] [pmid 8791410] --- --- --- --- --- --- S0001149 // CDC12 SGDID:S0001149, Chr VIII from 328038-326815, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016644 // cdna:Genscan chromosome:SGD1:VIII:326815:328038:-1 // ensembl // 11 // --- /// GENEFINDER00000020188 // cdna:GeneFinder chromosome:SGD1:VIII:326815:328038:-1 // ensembl // 11 // --- /// YHR107C // cdna:known chromosome:SGD1:VIII:326815:328038:-1 gene:YHR107C // ensembl // 11 // --- --- No cerevisiae_gene 1.02197288590376 1.24710883621488 -1.03625458306555 1.59514629484838 1.04978116586665 Max fold change below threshold 4 1.59514629484838 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769528_at YHR198C.S1 The authentic, non-tagged protein was localized to the mitochondria 1.59510529429369 1109.17211914063 797.832611083984 --- --- 5739 // mitochondrion // inferred from direct assay --- 753.369995117188 1016.63977050781 1201.70446777344 842.295227050781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR198C /GEN=RIX1 /DB_XREF=GI:6321992 /SEG=NC_001140:-496313,497278 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Yhr198cp --- --- --- --- --- --- S0001241 // FMP22 SGDID:S0001241, Chr VIII from 497279-496314, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016720 // cdna:Genscan chromosome:SGD1:VIII:496314:497279:-1 // ensembl // 11 // --- /// GENEFINDER00000020200 // cdna:GeneFinder chromosome:SGD1:VIII:496314:497255:-1 // ensembl // 11 // --- /// YHR198C // cdna:known chromosome:SGD1:VIII:496314:497279:-1 gene:YHR198C // ensembl // 11 // --- --- No cerevisiae_gene 1.07031685588535 1.34945614651095 1.5310728631943 1.59510529429369 1.11803659889556 Max fold change below threshold 4 1.59510529429369 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769575_at YDR486C.S1 Cytoplasmic and vacuolar membrane protein involved in late endosome to vacuole transport; required for normal filament maturation during pseudohyphal growth; may function in targeting specific cargo proteins for degradation 1.59492612444122 1006.86016845703 878.766754150391 VPS60 30447 // filamentous growth // inferred from mutant phenotype /// 45324 // late endosome to vacuole transport // inferred from mutant phenotype 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 816.654541015625 922.177124023438 1091.54321289063 940.878967285156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR486C /GEN=VPS60 /DB_XREF=GI:37362639 /SEG=NC_001136:-1427419,1428108 /DEF=vacuolar protein sorting (putative) /NOTE=Vps60p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002894 // VPS60 SGDID:S0002894, Chr IV from 1428110-1427421, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023670 // cdna:GeneFinder chromosome:SGD1:IV:1427421:1428209:-1 // ensembl // 11 // --- /// GENSCAN00000025481 // cdna:Genscan chromosome:SGD1:IV:1427421:1428110:-1 // ensembl // 11 // --- /// YDR486C // cdna:known chromosome:SGD1:IV:1427421:1428110:-1 gene:YDR486C // ensembl // 11 // --- --- No cerevisiae_gene 1.30541832821776 1.12921324465616 1.59492612444122 1.33660337152248 1.15211380091641 Max fold change below threshold 4 1.59492612444122 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770012_at YCL043C.S1 Protein disulfide isomerase, multifunctional protein resident in the endoplasmic reticulum lumen, essential for the formation of disulfide bonds in secretory and cell-surface proteins, unscrambles non-native disulfide bonds 1.59482206312223 4490.49267578125 2925.9375 PDI1 6457 // protein folding // inferred from mutant phenotype 5788 // endoplasmic reticulum lumen // traceable author statement 3756 // protein disulfide isomerase activity // inferred from mutant phenotype /// 3756 // protein disulfide isomerase activity // traceable author statement 3006.99291992188 4795.61865234375 4185.36669921875 2844.88208007813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL043C /GEN=PDI1 /DB_XREF=GI:6319806 /SEG=NC_001135:-48653,50221 /DEF=Catalyzes the formation and isomerization of disulfide bonds during the folding of secretory proteins. /NOTE=Pdi1p; go_component: endoplasmic reticulum lumen [goid GO:0005788] [evidence TAS] [pmid 1740407]; go_function: protein disulfide isomerase activity [goid GO:0003756] [evidence IMP,TAS] [pmid 11157982]; go_process: protein folding [goid GO:0006457] [evidence IMP] [pmid 11157982] --- --- --- --- --- --- S0000548 // PDI1 SGDID:S0000548, Chr III from 50221-48653, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022433 // cdna:Genscan chromosome:SGD1:III:48653:50221:-1 // ensembl // 11 // --- /// GENEFINDER00000023337 // cdna:GeneFinder chromosome:SGD1:III:48653:50221:-1 // ensembl // 11 // --- /// YCL043C // cdna:known chromosome:SGD1:III:48653:50221:-1 gene:YCL043C // ensembl // 11 // --- --- No cerevisiae_gene 1.00852943452205 1.59482206312223 -1.20375594076688 1.39187780306696 -1.05698332489032 Max fold change below threshold 4 1.59482206312223 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772643_at YHR039C-A.S1 Vacuolar H+ ATPase subunit G of the catalytic (V1) sector 1.59465407545547 3585.30493164063 4917.81909179688 VMA10 5977 // glycogen metabolism // inferred from direct assay /// 7035 // vacuolar acidification // traceable author statement 221 // hydrogen-transporting ATPase V1 domain // traceable author statement 46961 // hydrogen-transporting ATPase activity, rotational mechanism // traceable author statement 5326.8095703125 3830.19287109375 3340.4169921875 4508.82861328125 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR039C-A /GEN=VMA10 /DB_XREF=GI:6321829 /SEG=NC_001140:-187165,187671 /DEF=vacuolar H-ATPase 13 kDa subunit of VO membrane sector /NOTE=Vma10p; go_component: hydrogen-transporting ATPase V1 domain [goid GO:0000221] [evidence TAS] [pmid 9442887]; go_function: hydrogen-transporting ATPase activity, rotational mechanism [goid GO:0046961] [evidence TAS] [pmid 9442887]; go_process: glycogen metabolism [goid GO:0005977] [evidence IDA] [pmid 12096123]; go_process: vacuolar acidification [goid GO:0007035] [evidence TAS] [pmid 9442887] --- --- --- --- --- --- S0002100 // VMA10 SGDID:S0002100, Chr VIII from 187671-187669,187506-187165, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// U21240 // Saccharomyces cerevisiae 13-kDa vacuolar H-ATPase subunit (VMA10) mRNA, complete cds. // gb // 11 // --- /// YHR039C-A // cdna:known chromosome:SGD1:VIII:187165:187671:-1 gene:YHR039C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.32103101950304 -1.39074186329196 -1.10937631085827 -1.59465407545547 -1.18141762022664 Max fold change below threshold 4 1.59465407545547 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774548_at YMR188C.S1 Mitochondrial ribosomal protein of the small subunit 1.59427079954166 1291.53289794922 967.996826171875 MRPS17 6412 // protein biosynthesis // inferred from curator /// 9060 // aerobic respiration // inferred from expression pattern /// 9060 // aerobic respiration // inferred from mutant phenotype 5763 // mitochondrial small ribosomal subunit // inferred from physical interaction /// 5763 // mitochondrial small ribosomal subunit // inferred from sequence similarity 3735 // structural constituent of ribosome // inferred from physical interaction /// 3735 // structural constituent of ribosome // inferred from sequence similarity 910.63525390625 1331.93591308594 1251.1298828125 1025.3583984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR188C /GEN=MRPS17 /DB_XREF=GI:6323842 /SEG=NC_001145:-636290,637003 /DEF=Mitochondrial ribosomal protein of the small subunit /NOTE=Mrps17p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence ISS] [pmid 10929718]; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IPI] [pmid 12392552]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence ISS] [pmid 10929718]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IPI] [pmid 12392552]; go_process: aerobic respiration [goid GO:0009060] [evidence IEP,IMP] [pmid 10929718]; go_process: protein biosynthesis [goid GO:0006412] [evidence IC] [pmid 12392552] --- --- --- --- --- --- S0004800 // MRPS17 SGDID:S0004800, Chr XIII from 637003-636290, reverse complement, Verified ORF // sgd // 11 // --- /// YMR188C // cdna:known chromosome:SGD1:XIII:636290:637003:-1 gene:YMR188C // ensembl // 11 // --- --- No cerevisiae_gene 1.59427079954166 1.46264479370031 1.23296725274949 1.37390890309338 1.12598144431498 Max fold change below threshold 4 1.59427079954166 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773122_at YLL043W.S1 Plasma membrane glycerol channel, member of the major intrinsic protein (MIP) family of channel proteins; involved in efflux of glycerol and in uptake of the trivalent metalloids arsenite and antimonite 1.59409437742855 1470.36865234375 1015.30233764648 FPS1 747 // conjugation with cellular fusion // inferred from mutant phenotype /// 6810 // transport // inferred from sequence similarity /// 15793 // glycerol transport // inferred from direct assay 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 5215 // transporter activity // inferred from mutant phenotype /// 5215 // transporter activity // inferred from direct assay /// 5215 // transporter activity // inferred from sequence similarity /// 15168 // glycerol transporter activity // inferred from direct assay 976.062683105469 1384.80126953125 1555.93603515625 1054.5419921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL043W /GEN=FPS1 /DB_XREF=GI:6322985 /SEG=NC_001144:+49937,51946 /DEF=Plasma membrane glycerol channel, member of the major intrinsic protein (MIP) family of channel proteins; involved in efflux of glycerol and in uptake of the trivalent metalloids arsenite and antimonite /NOTE=Fps1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 11914276]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: glycerol transporter activity [goid GO:0015168] [evidence IDA] [pmid 12486125]; go_function: transporter activity [goid GO:0005215] [evidence IDA,IMP] [pmid 8550015]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 9678606]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IMP] [pmid 9281576]; go_process: glycerol transport [goid GO:0015793] [evidence IDA] [pmid 12486125]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 9678606] --- --- --- --- --- S0003966 // span:257-279,328-350,370-392,455-477,508-527 // numtm:5 S0003966 // FPS1 SGDID:S0003966, Chr XII from 49937-51946, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024758 // cdna:GeneFinder chromosome:SGD1:XII:49937:52066:1 // ensembl // 11 // --- /// YLL043W // cdna:known chromosome:SGD1:XII:49937:51946:1 gene:YLL043W // ensembl // 11 // --- --- No cerevisiae_gene 1.11476642639161 1.41876264045392 1.31352803006489 1.59409437742855 1.08040396425395 Max fold change below threshold 4 1.59409437742855 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776477_at YDL131W.S1 Homocitrate synthase isozyme, catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, which is the first step in the lysine biosynthesis pathway; highly similar to the other isozyme, Lys20p 1.59405876766002 876.015197753906 1019.94226074219 LYS21 19878 // lysine biosynthesis, aminoadipic pathway // traceable author statement 5634 // nucleus // inferred from direct assay 4410 // homocitrate synthase activity // inferred from sequence similarity 999.795043945313 973.630249023438 778.400146484375 1040.08947753906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL131W /GEN=LYS21 /DB_XREF=GI:6320071 /SEG=NC_001136:+227393,228715 /DEF=homocitrate synthase, highly homologous to YDL182W /NOTE=Lys21p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: homocitrate synthase activity [goid GO:0004410] [evidence ISS] [pmid 9099739]; go_process: lysine biosynthesis, aminoadipic pathway [goid GO:0019878] [evidence TAS] [pmid 10103047] --- --- --- --- --- --- S0002289 // LYS21 SGDID:S0002289, Chr IV from 227393-228715, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023441 // cdna:GeneFinder chromosome:SGD1:IV:227393:228715:1 // ensembl // 11 // --- /// GENSCAN00000025002 // cdna:Genscan chromosome:SGD1:IV:227393:228715:1 // ensembl // 11 // --- /// YDL131W // cdna:known chromosome:SGD1:IV:227393:228715:1 gene:YDL131W // ensembl // 11 // --- --- No cerevisiae_gene 1.59405876766002 -1.02687344086538 -1.54153831212499 -1.28442299049 1.04030269387488 Max fold change below threshold 4 1.59405876766002 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771492_at YGL189C.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps26Bp and has similarity to rat S26 ribosomal protein 1.59381614691657 3695.85327148438 4451.34252929688 RPS26A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 4893.58056640625 4001.51538085938 3390.19116210938 4009.1044921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL189C /GEN=RPS26A /DB_XREF=GI:6321249 /SEG=NC_001139:-148233,148592 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps26Bp and has similarity to rat S26 ribosomal protein /NOTE=Rps26ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0003157 // RPS26A SGDID:S0003157, Chr VII from 148594-148235, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019208 // cdna:Genscan chromosome:SGD1:VII:148235:148594:-1 // ensembl // 11 // --- /// GENEFINDER00000021646 // cdna:GeneFinder chromosome:SGD1:VII:148235:148594:-1 // ensembl // 11 // --- /// YGL189C // cdna:known chromosome:SGD1:VII:148235:148594:-1 gene:YGL189C // ensembl // 11 // --- --- No cerevisiae_gene -1.19744456501401 -1.222931839726 -1.59381614691657 -1.44345269408391 -1.22061686741823 Max fold change below threshold 4 1.59381614691657 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769889_at SPAC3H8.05c.S1 --- 1.59378086676807 --- --- --- --- 5.67095136642456 8.97059059143066 9.03825378417969 4.73907041549683 0.111571997404099 0.398925989866257 0.0561522990465164 0.24609400331974 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H8.05c /DEF=hypothetical protein --- --- --- --- --- --- SPAC3H8.05c // |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.46736242559992 1.58184932506069 1.50768205459971 1.59378086676807 -1.1966379203568 Max fold change below threshold 4 1.59378086676807 Max fold change below threshold AAAPMA No 4 0 AAMA 3 0 1 No No x = 1
1773355_at YFR011C.S1 Hypothetical protein 1.59336090313217 635.418029785156 471.121810913086 --- --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 480.920501708984 537.399169921875 733.436889648438 461.323120117188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR011C /GEN=UBP6 /DB_XREF=GI:14318533 /SEG=NC_001138:-166739,167251 /DEF=Hypothetical ORF /NOTE=Yfr011cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001907 // YFR011C SGDID:S0001907, Chr VI from 167251-166739, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000023253 // cdna:Genscan chromosome:SGD1:VI:166739:167251:-1 // ensembl // 11 // --- /// YFR011C // cdna:known chromosome:SGD1:VI:166739:167251:-1 gene:YFR011C // ensembl // 11 // --- YFR010W-A // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene -1.59336090313217 1.11743867855953 1.41918735832918 1.52506887737603 -1.04248081385303 Max fold change below threshold 4 1.59336090313217 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776875_at YLR399C.S1 Protein involved in transcription initiation at TATA-containing promoters; associates with the basal transcription factor TFIID; contains two bromodomains; corresponds to the C-terminal region of mammalian TAF1; redundant with Bdf2p 1.59335411686666 3431.28210449219 2441.15344238281 BDF1 6281 // DNA repair // inferred from mutant phenotype /// 6338 // chromatin remodeling // inferred from physical interaction /// 7126 // meiosis // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype 790 // nuclear chromatin // inferred from direct assay /// 5634 // nucleus // inferred from direct assay 30528 // transcription regulator activity // inferred from mutant phenotype /// 30528 // transcription regulator activity // inferred from sequence similarity 2380.5341796875 3793.03393554688 3069.5302734375 2501.77270507813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR399C /GEN=BDF1 /DB_XREF=GI:6323431 /SEG=NC_001144:-919536,921596 /DEF=Required for sporulation, possible component of chromatin; affects synthesis of snRNA /NOTE=Bdf1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 7791775]; go_function: transcription regulator activity [goid GO:0030528] [evidence IMP,ISS] [pmid 7816623]; go_process: chromatin remodeling [goid GO:0006338] [evidence IPI] [pmid 14690608]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 7791775] --- --- --- --- scop // a.3.1.Two-domain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; Two-domain cytochrome c // 2.40000009536743 /// scop // a.4.5.SCF ubiquitin ligase complex WHB domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; SCF ubiquitin ligase complex WHB domain // 0.0810000002384186 --- S0004391 // BDF1 SGDID:S0004391, Chr XII from 921596-919536, reverse complement, Verified ORF // sgd // 11 // --- /// L13469 // Saccharomyces cerevisiae antiviral protein Ski2p (SKI) mRNA, complete cds. // gb // 10 // --- /// GENSCAN00000018120 // cdna:Genscan chromosome:SGD1:XII:919536:921596:-1 // ensembl // 11 // --- /// GENEFINDER00000024759 // cdna:GeneFinder chromosome:SGD1:XII:919536:921596:-1 // ensembl // 11 // --- /// YLR399C // cdna:known chromosome:SGD1:XII:919536:921596:-1 gene:YLR399C // ensembl // 11 // --- --- No cerevisiae_gene 1.3442096479954 1.59335411686666 -1.01577245922187 1.28942919603047 1.05092912608654 Max fold change below threshold 4 1.59335411686666 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773135_at YPL054W.S1 Zinc-finger protein of unknown function 1.59334021221273 743.847045898438 827.079315185547 LEE1 --- --- --- 786.136108398438 797.813171386719 689.880920410156 868.022521972656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL054W /GEN=LEE1 /DB_XREF=GI:6325203 /SEG=NC_001148:+455754,456659 /DEF=Product of gene unknown /NOTE=Lee1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005975 // LEE1 SGDID:S0005975, Chr XVI from 455756-456661, Verified ORF // sgd // 11 // --- /// GENSCAN00000017148 // cdna:Genscan chromosome:SGD1:XVI:455756:456661:1 // ensembl // 11 // --- /// YPL054W // cdna:known chromosome:SGD1:XVI:455756:456661:1 gene:YPL054W // ensembl // 11 // --- --- No cerevisiae_gene -1.48657854878456 1.01485374207282 -1.59334021221273 -1.13952435143598 1.10416315024766 Max fold change below threshold 4 1.59334021221273 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769667_at YOL122C.S1 Divalent metal ion transporter with a broad specificity for di-valent and tri-valent metals; post-translationally regulated by levels of metal ions; member of the Nramp family of metal transport proteins 1.59315962761043 316.441696166992 253.189270019531 SMF1 6828 // manganese ion transport // inferred from mutant phenotype 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 5384 // manganese ion transporter activity // inferred from mutant phenotype /// 15082 // di-, tri-valent inorganic cation transporter activity // inferred from direct assay 209.134857177734 333.185211181641 299.698181152344 297.243682861328 0.000732421991415322 0.00415039015933871 0.00805663969367743 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL122C /GEN=SMF1 /DB_XREF=GI:6324450 /SEG=NC_001147:-89691,91418 /DEF=Isolated as high copy suppressor of a cdc1 mutation & involved in high affinity Mn2+ uptake. SMF1 was isolated as a high copy suppressor of a ts mutation in the PEP (mito. matrix protease) gene & may influence PEP-dependent protein import /NOTE=Smf1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 8643535]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 9988727]; go_function: manganese ion transporter activity [goid GO:0005384] [evidence IMP] [pmid 8643535]; go_process: manganese ion transport [goid GO:0006828] [evidence IMP] [pmid 8643535] --- --- --- --- --- S0005482 // span:72-94,107-129,150-172,182-204,217-239,265-287,345-367,393-415,436-458,462-484,543-565 // numtm:11 S0005482 // SMF1 SGDID:S0005482, Chr XV from 91418-89691, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017370 // cdna:Genscan chromosome:SGD1:XV:89691:91418:-1 // ensembl // 11 // --- /// GENEFINDER00000022837 // cdna:GeneFinder chromosome:SGD1:XV:89691:91418:-1 // ensembl // 9 // --- /// YOL122C // cdna:known chromosome:SGD1:XV:89691:91418:-1 gene:YOL122C // ensembl // 11 // --- --- No cerevisiae_gene 1.1712376062155 1.59315962761043 -1.15803589186982 1.43303792202198 1.42130148399276 Max fold change below threshold 4 1.59315962761043 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1777359_at YCL029C.S1 Microtubule-associated protein, component of the interface between microtubules and kinetochore, involved in sister chromatid separation; essential in polyploid cells but not in haploid or diploid cells; ortholog of mammalian CLIP-170 1.59221967950286 138.705490112305 201.841117858887 BIK1 92 // mitotic anaphase B // traceable author statement /// 30472 // mitotic spindle organization and biogenesis in nucleus // traceable author statement 776 // kinetochore // inferred from direct assay /// 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 5816 // spindle pole body // traceable author statement /// 5876 // spindle microtubule // traceable author statement /// 5876 // spindle microtubule // inferred from direct assay /// 5938 // cell cortex // inferred from direct assay 8017 // microtubule binding // inferred from genetic interaction 169.747512817383 106.610610961914 170.800369262695 233.934722900391 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL029C /GEN=BIK1 /DB_XREF=GI:6319820 /SEG=NC_001135:-68599,69921 /DEF=Microtubule-associated protein required for microtubule function during mating and mitosis /NOTE=Bik1p; go_component: spindle microtubule [goid GO:0005876] [evidence TAS] [pmid 9153752]; go_component: spindle pole body [goid GO:0005816] [evidence TAS] [pmid 9153752]; go_function: microtubule binding [goid GO:0008017] [evidence IGI] [pmid 2277073]; go_process: mitotic anaphase B [goid GO:0000092] [evidence TAS] [pmid 9153752]; go_process: mitotic spindle assembly (sensu Fungi) [goid GO:0030472] [evidence TAS] [pmid 9153752] --- --- --- --- --- --- S0000534 // BIK1 SGDID:S0000534, Chr III from 69921-68599, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000022443 // cdna:Genscan chromosome:SGD1:III:68599:69921:-1 // ensembl // 10 // --- /// GENEFINDER00000023300 // cdna:GeneFinder chromosome:SGD1:III:68599:69921:-1 // ensembl // 10 // --- /// YCL029C // cdna:known chromosome:SGD1:III:68599:69921:-1 gene:YCL029C // ensembl // 10 // --- --- No cerevisiae_gene -1.27580074908721 -1.59221967950286 1.46182968101337 1.00620248525494 1.37813343487431 Max fold change below threshold 4 1.59221967950286 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770495_at YJR032W.S1 Peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds to Hsp82p and contributes to chaperone activity 1.59221764515794 73.5886764526367 119.776962280273 CPR7 6950 // response to stress // inferred from genetic interaction /// 6950 // response to stress // inferred from mutant phenotype 5829 // cytosol // inferred from physical interaction 3755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay /// 51082 // unfolded protein binding // inferred from direct assay 111.946899414063 70.3087921142578 76.8685607910156 127.607025146484 0.000244141003349796 0.00415039015933871 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR032W /GEN=CPR7 /DB_XREF=GI:6322492 /SEG=NC_001142:+490995,492176 /DEF=Peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds to Hsp82p and contributes to chaperone activity /NOTE=Cpr7p; go_component: cytosol [goid GO:0005829] [evidence IPI] [pmid 10942767]; go_function: chaperone activity [goid GO:0003754] [evidence IDA] [pmid 10942767]; go_function: peptidyl-prolyl cis-trans isomerase activity [goid GO:0003755] [evidence IDA] [pmid 10942767]; go_process: response to stress [goid GO:0006950] [evidence IGI,IMP] [pmid 9668076] --- --- --- --- --- --- S0003793 // CPR7 SGDID:S0003793, Chr X from 490995-492176, Verified ORF // sgd // 11 // --- /// GENSCAN00000024158 // cdna:Genscan chromosome:SGD1:X:490995:492176:1 // ensembl // 11 // --- /// GENEFINDER00000024426 // cdna:GeneFinder chromosome:SGD1:X:490995:492176:1 // ensembl // 11 // --- /// YJR032W // cdna:known chromosome:SGD1:X:490995:492176:1 gene:YJR032W // ensembl // 11 // --- --- No cerevisiae_gene 1.05821644827161 -1.59221764515794 1.39205992133634 -1.45634181597877 1.13988887422866 Max fold change below threshold 4 1.59221764515794 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777328_at YJL127C-B.S1 Identified by homology to Ashbya gossypii 1.59134412520032 815.821441650391 728.119171142578 --- --- --- --- 714.605346679688 866.646301269531 764.99658203125 741.632995605469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL127C-B /GEN=PBS2 /DB_XREF=GI:33438821 /SEG=NC_001142:-181470,181628 /DEF=Identified by homology to Ashbya gossypii /NOTE=Yjl127c-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028522 // YJL127C-B SGDID:S0028522, Chr X from 181628-181470, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YJL127C-B // cdna:known chromosome:SGD1:X:181470:181628:-1 gene:YJL127C-B // ensembl // 11 // --- --- No cerevisiae_gene -1.59134412520032 1.21276212848991 -1.06455886673218 1.07051617453703 1.03782178380187 Max fold change below threshold 4 1.59134412520032 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777293_at YBL071W-A.S1 Protein required, along with Dph1p, Dph2p, Jjj3p, and Dph5p, for synthesis of diphthamide, which is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); may act in a complex with Dph1p and Dph2p 1.59111681605614 799.611633300781 503.236312866211 KTI11 80 // G1 phase of mitotic cell cycle // inferred from direct assay /// 17183 // peptidyl-diphthamide biosynthesis from peptidyl-histidine // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 618.040649414063 672.634521484375 926.588745117188 388.431976318359 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL071W-A /GEN=KTI11 /DB_XREF=GI:21648335 /SEG=NC_001134:+89976,90224 /DEF=Similar to Hemiascomycetous yeast protein (FEBS Lett. 487(1): 31-36 (2000)). /NOTE=Kti11p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: G1 phase of mitotic cell cycle [goid GO:0000080] [evidence IDA] [pmid 11994165] --- --- --- --- --- --- S0007587 // KTI11 SGDID:S0007587, Chr II from 89976-90224, Verified ORF // sgd // 11 // --- /// YBL071W-A // cdna:known chromosome:SGD1:II:89976:90224:1 gene:YBL071W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.4690477305007 1.088333788598 -1.15368874148418 1.49923592565577 -1.59111681605614 Max fold change below threshold 4 1.59111681605614 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771803_at YMR023C.S1 Mitochondrial protein, forms a heterodimer complex with Mto1p that performs the 5-carboxymethylaminomethyl modification of the wobble uridine base in mitochondrial tRNAs; similar to human GTPBP3 1.59106252254793 409.015670776367 642.571350097656 MSS1 6400 // tRNA modification // inferred from mutant phenotype /// 6412 // protein biosynthesis // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay 5525 // GTP binding // inferred from sequence similarity 623.01416015625 426.460205078125 391.571136474609 662.128540039063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR023C /GEN=MSS1 /DB_XREF=GI:6323665 /SEG=NC_001145:-319436,321016 /DEF=May play a part in mitochondrial translation /NOTE=Mss1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 11604502]; go_function: GTP binding [goid GO:0005525] [evidence ISS] [pmid 8392589]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP] [pmid 8392589] --- --- --- --- --- --- S0004625 // MSS1 SGDID:S0004625, Chr XIII from 321016-319436, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018735 // cdna:Genscan chromosome:SGD1:XIII:319436:321016:-1 // ensembl // 10 // --- /// YMR023C // cdna:known chromosome:SGD1:XIII:319436:321016:-1 gene:YMR023C // ensembl // 10 // --- --- No cerevisiae_gene -1.42161504534317 -1.46089635735676 -1.08810708354613 -1.59106252254793 1.06278248936269 Max fold change below threshold 4 1.59106252254793 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sc-URA3-M_at AFFX-r2-Sc-URA3-M Orotidine-5'-phosphate (OMP) decarboxylase, catalyzes the sixth enzymatic step in the de novo biosynthesis of pyrimidines, converting OMP into uridine monophosphate (UMP); converts 5-FOA into 5-fluorouracil, a toxic compound 1.59082457086305 453.865676879883 659.842681884766 URA3 6207 // 'de novo' pyrimidine base biosynthesis // traceable author statement /// 19856 // pyrimidine base biosynthesis // traceable author statement --- 4590 // orotidine-5'-phosphate decarboxylase activity // inferred from direct assay 642.333190917969 403.773742675781 503.957611083984 677.352172851563 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=URA3 SGD:YEL021W orotidine-5-phosphate decarboxylase (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 7.40000009536743 --- S0000747 // URA3 SGDID:S0000747, Chr V from 116167-116970, Verified ORF // sgd // 11 // --- /// GENSCAN00000016786 // cdna:Genscan chromosome:SGD1:V:116167:116970:1 // ensembl // 11 // --- /// GENEFINDER00000019662 // cdna:GeneFinder chromosome:SGD1:V:116167:116970:1 // ensembl // 11 // --- /// YEL021W // cdna:known chromosome:SGD1:V:116167:116970:1 gene:YEL021W // ensembl // 11 // --- --- AFFX_control cerevisiae_gene -1.04773637789202 -1.59082457086305 1.24934409364056 -1.27457781525781 1.05451840637964 Max fold change below threshold 4 1.59082457086305 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772648_at YIL046W.S1 F-box protein containing five copies of the WD40 motif, controls cell cycle function, sulfur metabolism, and methionine biosynthesis as part of the ubiquitin ligase complex; interacts with and regulates Met4p, localizes within the nucleus 1.59036516945239 1978.50561523438 1819.28839111328 MET30 7049 // cell cycle // traceable author statement /// 16567 // protein ubiquitination // inferred from genetic interaction /// 16567 // protein ubiquitination // inferred from physical interaction /// 31146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from direct assay /// 46685 // response to arsenic // inferred from direct assay /// 46686 // response to cadmium ion // inferred from direct assay 19005 // SCF ubiquitin ligase complex // inferred from physical interaction /// 43224 // nuclear SCF ubiquitin ligase complex // inferred from direct assay 5515 // protein binding // traceable author statement 1833.54602050781 2020.54541015625 1936.4658203125 1805.03076171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL046W /GEN=MET30 /DB_XREF=GI:6322143 /SEG=NC_001141:+268650,270572 /DEF=F-box protein containing five copies of the WD40 motif, controls cell cycle function, sulfur metabolism, and methionine biosynthesis as part of the ubiquitin ligase complex; interacts with and regulates Met4p, localizes within the nucleus /NOTE=Met30p; go_component: SCF ubiquitin ligase complex [goid GO:0019005] [evidence IPI] [pmid 9716410]; go_component: nuclear ubiquitin ligase complex [goid GO:0000152] [evidence TAS] [pmid 10409741]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 10409741]; go_process: cell cycle [goid GO:0007049] [evidence TAS] [pmid 10409741]; go_process: protein ubiquitination [goid GO:0016567] [evidence IDA] [pmid 10975521]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10409741] --- --- --- --- --- --- S0001308 // MET30 SGDID:S0001308, Chr IX from 268650-270572, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019107 // cdna:GeneFinder chromosome:SGD1:IX:268671:270572:1 // ensembl // 11 // --- /// GENSCAN00000016441 // cdna:Genscan chromosome:SGD1:IX:268674:270572:1 // ensembl // 11 // --- /// YIL046W // cdna:known chromosome:SGD1:IX:268650:270572:1 gene:YIL046W // ensembl // 11 // --- --- No cerevisiae_gene -1.59036516945239 1.10198783535122 1.08300706059336 1.0561315607318 -1.01579765807532 Max fold change below threshold 4 1.59036516945239 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775344_at YDR126W.S1 Protein essential for spore wall formation 1.59007712538216 242.820236206055 369.552444458008 SWF1 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 16021 // integral to membrane // inferred from sequence similarity --- 337.061218261719 211.977905273438 273.662567138672 402.043670654297 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR126W /GEN=SWF1 /DB_XREF=GI:6320331 /SEG=NC_001136:+703228,704238 /DEF=Spore Wall Formation /NOTE=Swf1p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 10490616]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002533 // span:5-27,47-69,82-104,176-198,211-233 // numtm:5 S0002533 // SWF1 SGDID:S0002533, Chr IV from 703229-704239, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023771 // cdna:GeneFinder chromosome:SGD1:IV:703439:704239:1 // ensembl // 11 // --- /// YDR126W // cdna:known chromosome:SGD1:IV:703229:704239:1 gene:YDR126W // ensembl // 11 // --- --- No cerevisiae_gene 1.33815782635519 -1.59007712538216 -1.09797908944901 -1.23166723818286 1.19279124643204 Max fold change below threshold 4 1.59007712538216 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777690_at YIL101C.S1 Transcriptional repressor that binds to promoter sequences of the cyclin genes, CYS3, and SMF2; expression is induced by stress or starvation during mitosis, and late in meiosis; member of the Swi4p/Mbp1p family; potential Cdc28p substrate 1.58999849998478 669.562683105469 1088.46209716797 XBP1 6950 // response to stress // inferred from mutant phenotype /// 6950 // response to stress // inferred from direct assay 5634 // nucleus // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay 3700 // transcription factor activity // inferred from direct assay 1045.49621582031 681.579956054688 657.54541015625 1131.42797851563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL101C /GEN=XBP1 /DB_XREF=GI:6322090 /SEG=NC_001141:-175304,177247 /DEF=Transcriptional repressor that binds to promoter sequences of the cyclin genes, CYS3, and SMF2; expression is induced by stress or starvation during mitosis, and late in meiosis; member of the Swi4p/Mbp1p family; potential Cdc28p substrate /NOTE=Xbp1p; go_component: nucleus [goid GO:0005634] [evidence IDA,IPI] [pmid 9343412]; go_function: transcription factor activity [goid GO:0003700] [evidence IDA] [pmid 9343412]; go_process: response to stress [goid GO:0006950] [evidence IDA,IMP] [pmid 9343412] --- --- --- --- --- --- S0001363 // XBP1 SGDID:S0001363, Chr IX from 177247-175304, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016401 // cdna:Genscan chromosome:SGD1:IX:175304:177247:-1 // ensembl // 11 // --- /// GENEFINDER00000019118 // cdna:GeneFinder chromosome:SGD1:IX:175304:177247:-1 // ensembl // 11 // --- /// YIL101C // cdna:known chromosome:SGD1:IX:175304:177247:-1 gene:YIL101C // ensembl // 11 // --- --- No cerevisiae_gene 1.07690352440627 -1.53393040175675 -1.15766962606862 -1.58999849998478 1.08219232302806 Max fold change below threshold 4 1.58999849998478 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773970_s_at YJL219W.S1 Putative hexose transporter that is nearly identical to Hxt9p, has similarity to major facilitator superfamily (MFS) transporters and is involved in pleiotropic drug resistance /// Putative hexose transporter that is nearly identical to Hxt11p, has similarity to major facilitator superfamily (MFS) transporters, expression of HXT9 is regulated by transcription factors Pdr1p and Pdr3p /// Protein of unknown function with similarity to hexose transporter family members, possible pseudogene /// Protein of unknown function with similarity to hexose transporter family members, possible pseudogene 1.58988276513731 55.5926322937012 68.5874176025391 HXT11 /// HXT9 /// HXT12 8645 // hexose transport // inferred from genetic interaction 5886 // plasma membrane // inferred from sequence similarity 5353 // fructose transporter activity // inferred from genetic interaction /// 5354 // galactose transporter activity // inferred from genetic interaction /// 5355 // glucose transporter activity // inferred from genetic interaction /// 15578 // mannose transporter activity // inferred from genetic interaction /// 15149 // hexose transporter activity // inferred from genetic interaction 63.5561676025391 39.9753799438477 71.2098846435547 73.6186676025391 0.00292969006113708 0.0561522990465164 0.00122069998178631 0.00122069998178631 P M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL219W /GEN=HXT9 /DB_XREF=GI:6322242 /SEG=NC_001142:+19497,21200 /DEF=Putative hexose transporter that is nearly identical to Hxt11p, has similarity to major facilitator superfamily (MFS) transporters, expression of HXT9 is regulated by transcription factors Pdr1p and Pdr3p /NOTE=Hxt9p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 8929273]; go_function: fructose transporter activity [goid GO:0005353] [evidence IGI] [pmid 10618490]; go_function: galactose transporter activity [goid GO:0005354] [evidence IGI] [pmid 10618490]; go_function: glucose transporter activity [goid GO:0005355] [evidence IGI] [pmid 10618490]; go_function: mannose transporter activity [goid GO:0015578] [evidence IGI] [pmid 10618490]; go_process: hexose transport [goid GO:0008645] [evidence IGI] [pmid 10618490] --- --- --- --- --- S0001432 // span:2-19,29-51,56-78,88-110,123-142,245-267,274-296,318-340,352-374,378-400 // numtm:10 /// S0001433 // span:55-77 // numtm:1 /// S0003755 // span:55-77,111-130,140-159,166-188,198-220,233-252,355-377,384-406,428-450,462-484,488-510 // numtm:11 /// S0005516 // span:55-77,111-130,140-159,166-188,198-220,233-252,355-377,384-406,428-450,462-484,488-510 // numtm:11 S0003755 // HXT9 SGDID:S0003755, Chr X from 19497-21200, Verified ORF // sgd // 11 // --- /// S0005516 // HXT11 SGDID:S0005516, Chr XV from 25272-26975, Verified ORF // sgd // 11 // --- /// GENSCAN00000023973 // cdna:Genscan chromosome:SGD1:X:19497:21200:1 // ensembl // 11 // --- /// GENEFINDER00000024530 // cdna:GeneFinder chromosome:SGD1:X:19497:21200:1 // ensembl // 11 // --- /// GENSCAN00000017345 // cdna:Genscan chromosome:SGD1:XV:25317:26975:1 // ensembl // 11 // --- /// GENEFINDER00000022570 // cdna:GeneFinder chromosome:SGD1:XV:25317:26975:1 // ensembl // 11 // --- /// YJL219W // cdna:known chromosome:SGD1:X:19497:21200:1 gene:YJL219W // ensembl // 11 // --- /// YOL156W // cdna:known chromosome:SGD1:XV:25272:26975:1 gene:YOL156W // ensembl // 11 // --- S0001432 // sgd // 3 // Cross Hyb Matching Probes /// GENSCAN00000016346 // ensembl // 3 // Cross Hyb Matching Probes /// GENEFINDER00000019019 // ensembl // 3 // Cross Hyb Matching Probes /// YIL170W // ensembl // 3 // Cross Hyb Matching Probes No cerevisiae_gene -1.16462346245907 -1.58988276513731 1.33935194732951 1.12042445807745 1.15832452426848 Max fold change below threshold 4 1.58988276513731 Max fold change below threshold PPMPPP No 1 0 PMPP 0 3 1 No No 2 < x = 3
1776418_at YDL192W.S1 ADP-ribosylation factor, GTPase of the Ras superfamily involved in regulation of coated formation vesicles in intracellular trafficking within the Golgi; functionally interchangeable with Arf2p 1.58970774287551 1577.42150878906 1530.65930175781 ARF1 6888 // ER to Golgi transport // traceable author statement /// 6891 // intra-Golgi transport // traceable author statement 5798 // Golgi vesicle // traceable author statement /// 5829 // cytosol // traceable author statement 3924 // GTPase activity // inferred from sequence similarity 1447.87524414063 1412.20703125 1742.63598632813 1613.443359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL192W /GEN=ARF1 /DB_XREF=GI:6320009 /SEG=NC_001136:+116322,116867 /DEF=implicated in signal transduction and intracellular protein transport to or within the Golgi apparatus /NOTE=Arf1p; go_component: Golgi vesicle [goid GO:0005798] [evidence TAS] [pmid 9705267]; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 9705267]; go_function: GTPase activity [goid GO:0003924] [evidence ISS] [pmid 3133654]; go_process: ER to Golgi transport [goid GO:0006888] [evidence TAS] [pmid 9705267]; go_process: intra-Golgi transport [goid GO:0006891] [evidence TAS] [pmid 9705267] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 3.0 --- S0002351 // ARF1 SGDID:S0002351, Chr IV from 116322-116867, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023922 // cdna:GeneFinder chromosome:SGD1:IV:116322:118518:1 // ensembl // 10 // --- /// GENSCAN00000024960 // cdna:Genscan chromosome:SGD1:IV:116322:116867:1 // ensembl // 11 // --- /// YDL192W // cdna:known chromosome:SGD1:IV:116322:116867:1 gene:YDL192W // ensembl // 11 // --- --- No cerevisiae_gene 1.58970774287551 -1.025257070742 1.12057100779243 1.20358158852454 1.11435247332559 Max fold change below threshold 4 1.58970774287551 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771212_at YLR306W.S1 Enzyme that mediates the conjugation of Rub1p, a ubiquitin-like protein, to other proteins; related to E2 ubiquitin-conjugating enzymes 1.58964212095485 154.284957885742 108.11332321167 UBC12 209 // protein polyubiquitination // traceable author statement /// 6513 // protein monoubiquitination // traceable author statement /// 45116 // protein neddylation // inferred from direct assay --- 4840 // ubiquitin conjugating enzyme activity // traceable author statement 102.604843139648 145.464935302734 163.10498046875 113.621803283691 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR306W /GEN=UBC12 /DB_XREF=GI:6323337 /SEG=NC_001144:+744153,744853 /DEF=Enzyme that mediates the conjugation of Rub1p, a ubiquitin-like protein, to other proteins; related to E2 ubiquitin-conjugating enzymes /NOTE=Ubc12p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: ubiquitin conjugating enzyme activity [goid GO:0004840] [evidence TAS] [pmid 8982460]; go_process: protein monoubiquitination [goid GO:0006513] [evidence TAS] [pmid 8982460]; go_process: protein neddylation [goid GO:0045116] [evidence IDA] [pmid 9545234]; go_process: protein polyubiquitination [goid GO:0000209] [evidence TAS] [pmid 8982460] --- --- --- --- --- --- S0004297 // UBC12 SGDID:S0004297, Chr XII from 744153-744155,744290-744853, intron sequence removed, Verified ORF // sgd // 11 // --- /// YLR306W // cdna:known chromosome:SGD1:XII:744153:744853:1 gene:YLR306W // ensembl // 11 // --- --- No cerevisiae_gene -1.21735486851085 1.4177199716075 1.1928270420568 1.58964212095485 1.10737271075059 Max fold change below threshold 4 1.58964212095485 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776807_at YOL004W.S1 DNA binding subunit of Sin3p-Rpd3p histone deacetylase complex, involved in transcriptional repression of meiosis-specific genes during vegetative growth and silencing 1.58959676173525 1835.0400390625 2334.56201171875 SIN3 183 // chromatin silencing at ribosomal DNA // inferred from mutant phenotype /// 6303 // double-strand break repair via nonhomologous end-joining // inferred from mutant phenotype /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 30466 // chromatin silencing at silent mating-type cassette // inferred from mutant phenotype 118 // histone deacetylase complex // inferred from physical interaction /// 16580 // Sin3 complex // inferred from physical interaction 4407 // histone deacetylase activity // inferred from physical interaction 2252.14794921875 1821.517578125 1848.5625 2416.97607421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL004W /GEN=SIN3 /DB_XREF=GI:6324570 /SEG=NC_001147:+316938,321548 /DEF=DNA binding protein involved in transcriptional regulation /NOTE=Sin3p; go_component: Sin3 complex [goid GO:0016580] [evidence IPI] [pmid 9393435]; go_component: histone deacetylase complex [goid GO:0000118] [evidence IPI] [pmid 10388812]; go_function: histone deacetylase activity [goid GO:0004407] [evidence IPI] [pmid 10388812]; go_process: chromatin silencing at ribosomal DNA [goid GO:0000183] [evidence IMP] [pmid 10388812]; go_process: chromatin silencing at silent mating-type cassette (sensu Fungi) [goid GO:0030466] [evidence IMP] [pmid 10388812]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 10388812]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IGI,IMP] [pmid 10713159] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 2.09999990463257 --- S0005364 // SIN3 SGDID:S0005364, Chr XV from 316938-321548, Verified ORF // sgd // 11 // --- /// GENSCAN00000017466 // cdna:Genscan chromosome:SGD1:XV:316938:321548:1 // ensembl // 11 // --- /// GENEFINDER00000022824 // cdna:GeneFinder chromosome:SGD1:XV:316938:321548:1 // ensembl // 11 // --- /// YOL004W // cdna:known chromosome:SGD1:XV:316938:321548:1 gene:YOL004W // ensembl // 11 // --- --- No cerevisiae_gene -1.58959676173525 -1.23641296480763 1.00064738544952 -1.2183239404774 1.07318707683355 Max fold change below threshold 4 1.58959676173525 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775815_at YML071C.S1 Component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tethering complex that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments 1.58892872856521 449.898986816406 700.421691894531 COG8 6891 // intra-Golgi transport // inferred from physical interaction /// 6891 // intra-Golgi transport // inferred from genetic interaction 17119 // Golgi transport complex // inferred from physical interaction --- 650.125793457031 447.104248046875 452.693725585938 750.717590332031 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML071C /GEN=COG8 /DB_XREF=GI:6323569 /SEG=NC_001145:-129749,131572 /DEF=Conserved Oligomeric Golgi complex 8 dependent on RIC1 /NOTE=Cog8p; go_component: Golgi transport complex [goid GO:0017119] [evidence IPI] [pmid 11703943]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: intra-Golgi transport [goid GO:0006891] [evidence IGI,IPI] [pmid 11703943] --- --- --- --- --- --- S0004536 // COG8 SGDID:S0004536, Chr XIII from 131572-129749, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022048 // cdna:GeneFinder chromosome:SGD1:XIII:129749:131572:-1 // ensembl // 11 // --- /// YML071C // cdna:known chromosome:SGD1:XIII:129749:131572:-1 gene:YML071C // ensembl // 11 // --- --- No cerevisiae_gene -1.58892872856521 -1.45408100302566 -1.52485520071338 -1.43612724611005 1.15472666657341 Max fold change below threshold 4 1.58892872856521 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774846_at YIL076W.S1 Epsilon-COP subunit of the coatomer; regulates retrograde Golgi-to-ER protein traffic; stabilizes Cop1p, the alpha-COP and the coatomer complex; non-essential for cell growth 1.588834640302 1167.61993408203 1401.43371582031 SEC28 6888 // ER to Golgi transport // inferred from mutant phenotype /// 6901 // vesicle coating // inferred from mutant phenotype /// 6901 // vesicle coating // inferred from genetic interaction 30126 // COPI vesicle coat // inferred from sequence similarity /// 30126 // COPI vesicle coat // inferred from mutant phenotype --- 1356.72216796875 1183.1875 1152.05236816406 1446.14526367188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL076W /GEN=SEC28 /DB_XREF=GI:6322114 /SEG=NC_001141:+216466,217545 /DEF=Part of a heptameric protein complex that regulates retrograde Golgi-to-ER protein traffic in eukaryotic cells; coatomer forms the COP I vesicle coat whose functions are essential /NOTE=Sec28p; go_component: COPI vesicle coat [goid GO:0030126] [evidence IMP,ISS] [pmid 9463377]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 10532354]; go_process: vesicle coating [goid GO:0006901] [evidence IGI,IMP] [pmid 9463377] --- --- --- --- --- S0001338 // span:12-29 // numtm:1 S0001338 // SEC28 SGDID:S0001338, Chr IX from 216466-217545, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019090 // cdna:GeneFinder chromosome:SGD1:IX:216466:217545:1 // ensembl // 11 // --- /// GENSCAN00000016419 // cdna:Genscan chromosome:SGD1:IX:216655:217545:1 // ensembl // 11 // --- /// YIL076W // cdna:known chromosome:SGD1:IX:216466:217545:1 gene:YIL076W // ensembl // 11 // --- --- No cerevisiae_gene 1.588834640302 -1.14666709035445 1.04255970793578 -1.17765668077299 1.0659111333288 Max fold change below threshold 4 1.588834640302 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770296_at SPBC14F5.05c.S1 --- 1.5887876042196 --- --- --- --- 22.3179130554199 31.2164211273193 35.458423614502 29.3796100616455 0.0676269978284836 0.0375977009534836 0.0461426004767418 0.0375977009534836 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC14F5.05c /GEN=sam1 /DEF=S-adenosylmethionine synthetase (PMID 10620770) --- --- --- --- --- --- SPBC14F5.05c // |sam1||S-adenosylmethionine synthetase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.03835547974344 1.39871595743754 1.4915987622953 1.5887876042196 1.31641385951679 Max fold change below threshold 4 1.5887876042196 Max fold change below threshold APPMPP No 4 0 APPP 1 3 0 No No 2 < x = 3
1779317_at YDR305C.S1 Dinucleoside triphosphate hydrolase; has similarity to the tumor suppressor FHIT and belongs to the histidine triad (HIT) superfamily of nucleotide-binding proteins 1.58863250088518 806.213531494141 1293.00708007813 HNT2 9164 // nucleoside catabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 16787 // hydrolase activity // inferred from direct assay /// 17111 // nucleoside-triphosphatase activity // inferred from direct assay 1249.84692382813 786.743896484375 825.683166503906 1336.16723632813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR305C /GEN=HNT2 /DB_XREF=GI:6320511 /SEG=NC_001136:-1072738,1073480 /DEF=Dinucleoside triphosphate hydrolase; has similarity to the tumor suppressor FLIT and belongs to the histidine triad (HIT) superfamily of nucleotide-binding proteins /NOTE=Hnt2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: hydrolase activity [goid GO:0016787] [evidence IDA] [pmid 12028594]; go_function: nucleoside-triphosphatase activity [goid GO:0017111] [evidence IDA] [pmid 1653209]; go_process: nucleoside catabolism [goid GO:0009164] [evidence IMP] [pmid 9573184] --- --- --- --- --- --- S0002713 // HNT2 SGDID:S0002713, Chr IV from 1073482-1073396,1073306-1072740, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YDR305C // cdna:known chromosome:SGD1:IV:1072740:1073482:-1 gene:YDR305C // ensembl // 11 // --- AY389296 // gb // 3 // Cross Hyb Matching Probes /// AY389295 // gb // 2 // Cross Hyb Matching Probes /// GENEFINDER00000023804 // ensembl // 8 // Cross Hyb Matching Probes /// GENSCAN00000025335 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.05785523751036 -1.58863250088518 -1.28862231165372 -1.51371249231131 1.06906470772886 Max fold change below threshold 4 1.58863250088518 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773377_at YIL117C.S1 Pheromone-regulated protein, predicted to have 1 transmembrane segment; induced during cell integrity signaling 1.58839623880643 615.044784545898 839.637176513672 PRM5 747 // conjugation with cellular fusion // inferred from expression pattern 16021 // integral to membrane // inferred from sequence similarity --- 784.230651855469 493.724822998047 736.36474609375 895.043701171875 0.000244141003349796 0.00292969006113708 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL117C /GEN=PRM5 /DB_XREF=GI:6322074 /SEG=NC_001141:-140610,141566 /DEF=Pheromone-regulated protein, predicted to have 1 transmembrane segment; induced during cell integrity signalling /NOTE=Prm5p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 11062271]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IEP] [pmid 11062271] --- --- --- --- --- S0001379 // span:77-99 // numtm:1 S0001379 // PRM5 SGDID:S0001379, Chr IX from 141566-140610, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016388 // cdna:Genscan chromosome:SGD1:IX:140610:141566:-1 // ensembl // 11 // --- /// YIL117C // cdna:known chromosome:SGD1:IX:140610:141566:-1 gene:YIL117C // ensembl // 11 // --- --- No cerevisiae_gene 1.29348964322446 -1.58839623880643 -1.33120518042211 -1.06500298393648 1.1413016043867 Max fold change below threshold 4 1.58839623880643 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770228_at YER172C.S1 RNA-dependent ATPase RNA helicase involved in the facilitation and disruption of snRNA interactions, required for disruption of U4/U6 base-pairing in native snRNPs to activate the spliceosome for catalysis 1.58752934782527 440.45426940918 646.963592529297 BRR2 396 // U2-type spliceosome conformational change to release U4 and U1 // traceable author statement 5682 // snRNP U5 // traceable author statement /// 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 4004 // ATP-dependent RNA helicase activity // traceable author statement /// 31202 // RNA splicing factor activity, transesterification mechanism // traceable author statement 579.247009277344 364.873260498047 516.035278320313 714.68017578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER172C /GEN=BRR2 /DB_XREF=GI:6321020 /SEG=NC_001137:-529525,536016 /DEF=RNA helicase-related protein required for pre-mRNA splicing; Snurp 246 kDa protein (Snurp = Small nuclear ribonucleoprotein particle) /NOTE=Brr2p; go_component: U4/U6 x U5 tri-snRNP complex [goid GO:0046540] [evidence IDA] [pmid 10377396]; go_component: snRNP U5 [goid GO:0005682] [evidence TAS]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 9476892]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence TAS] [pmid 9476892]; go_process: U2-type spliceosome conformational change to release U4 and U1 [goid GO:0000396] [evidence TAS] --- --- --- --- --- --- S0000974 // BRR2 SGDID:S0000974, Chr V from 536016-529525, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016951 // cdna:Genscan chromosome:SGD1:V:529525:536016:-1 // ensembl // 11 // --- /// GENEFINDER00000019700 // cdna:GeneFinder chromosome:SGD1:V:529525:536016:-1 // ensembl // 11 // --- /// YER172C // cdna:known chromosome:SGD1:V:529525:536016:-1 gene:YER172C // ensembl // 11 // --- --- No cerevisiae_gene 1.00368562575399 -1.58752934782527 1.20260025333013 -1.12249497972849 1.23380900433628 Max fold change below threshold 4 1.58752934782527 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775129_at SPAPJ691.02.S1 --- 1.58741657312338 --- --- --- --- 5.42799091339111 8.60759353637695 8.61648273468018 4.25344657897949 0.194580003619194 0.091064453125 0.0561522990465164 0.149657994508743 A A M A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAPJ691.02 /DEF=zinc-binding protein (predicted) --- --- --- --- --- --- SPAPJ691.02 // |||zinc-binding protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.18064937458503 1.58577891409907 -1.09682695194602 1.58741657312338 -1.27613943483297 Max fold change below threshold 4 1.58741657312338 Max fold change below threshold APAAMA No 4 0 AAMA 3 0 1 No No x = 1
1778030_at YLR163C.S1 Smaller subunit of the mitochondrial processing protease, essential processing enzyme that cleaves the N-terminal targeting sequences from mitochondrially imported proteins 1.58740674591323 822.248931884766 817.393188476563 MAS1 6627 // mitochondrial protein processing // inferred from direct assay 17087 // mitochondrial processing peptidase complex // inferred from direct assay 4240 // mitochondrial processing peptidase activity // inferred from direct assay 744.915344238281 645.912902832031 998.5849609375 889.871032714844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR163C /GEN=MAS1 /DB_XREF=GI:6323192 /SEG=NC_001144:-491868,493256 /DEF=mitochondrial processing protease subunit /NOTE=Mas1p; go_component: mitochondrial processing peptidase complex [goid GO:0017087] [evidence IDA] [pmid 2905264]; go_function: mitochondrial processing peptidase activity [goid GO:0004240] [evidence IDA] [pmid 2905264]; go_process: mitochondrial processing [goid GO:0006627] [evidence IDA] [pmid 2007593] --- --- --- --- --- --- S0004153 // MAS1 SGDID:S0004153, Chr XII from 493256-491868, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017948 // cdna:Genscan chromosome:SGD1:XII:491868:493256:-1 // ensembl // 11 // --- /// GENEFINDER00000024547 // cdna:GeneFinder chromosome:SGD1:XII:491868:493256:-1 // ensembl // 11 // --- /// YLR163C // cdna:known chromosome:SGD1:XII:491868:493256:-1 gene:YLR163C // ensembl // 11 // --- --- No cerevisiae_gene 1.22602182619424 -1.15327521864352 1.58740674591323 1.34053482541511 1.19459350595709 Max fold change below threshold 4 1.58740674591323 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773893_at YNL180C.S1 Non-essential small GTPase of the Rho/Rac subfamily of Ras-like proteins, likely involved in protein kinase C (Pkc1p)-dependent signal transduction pathway that controls cell integrity 1.58715048536907 1435.29852294922 2147.52270507813 RHO5 7266 // Rho protein signal transduction // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3924 // GTPase activity // inferred from direct assay 2204.826171875 1389.17272949219 1481.42431640625 2090.21923828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL180C /GEN=RHO5 /DB_XREF=GI:6324149 /SEG=NC_001146:-299654,300649 /DEF=Rho family of small GTPases /NOTE=Rho5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: GTPase activity [goid GO:0003924] [evidence IDA] [pmid 11591390]; go_process: Rho protein signal transduction [goid GO:0007266] [evidence ISS] [pmid 11591390] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 9.60000038146973 --- S0005124 // RHO5 SGDID:S0005124, Chr XIV from 300649-299654, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000020502 // cdna:GeneFinder chromosome:SGD1:XIV:299654:300649:-1 // ensembl // 10 // --- /// YNL180C // cdna:known chromosome:SGD1:XIV:299654:300649:-1 gene:YNL180C // ensembl // 10 // --- --- No cerevisiae_gene 1.02811869115249 -1.58715048536907 -1.06388065834313 -1.48831509477557 -1.05483010178779 Max fold change below threshold 4 1.58715048536907 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771279_at YBR143C.S1 Polypeptide release factor involved in translation termination; mutant form acts as a recessive omnipotent suppressor 1.58715022362741 1194.40893554688 1880.83703613281 SUP45 910 // cytokinesis // inferred from genetic interaction /// 910 // cytokinesis // inferred from mutant phenotype /// 6415 // translational termination // inferred from mutant phenotype /// 6415 // translational termination // inferred from sequence similarity 5829 // cytosol // inferred from physical interaction /// 18444 // translation release factor complex // inferred from direct assay 16149 // translation release factor activity, codon specific // inferred from mutant phenotype /// 16149 // translation release factor activity, codon specific // inferred from sequence similarity 1842.291015625 1160.75402832031 1228.06384277344 1919.38305664063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR143C /GEN=SUP45 /DB_XREF=GI:6319619 /SEG=NC_001134:-530825,532138 /DEF=Recessive omnipotent suppressor. The wild-type gene functions in termination of translation. /NOTE=Sup45p; go_component: cytosol [goid GO:0005829] [evidence IPI] [pmid 1474892]; go_function: translation release factor activity, codon specific [goid GO:0016149] [evidence IMP,ISS] [pmid 9182990]; go_process: translational termination [goid GO:0006415] [evidence IMP,ISS] [pmid 9182990] --- --- --- --- --- --- S0000347 // SUP45 SGDID:S0000347, Chr II from 532176-530863, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021255 // cdna:Genscan chromosome:SGD1:II:530812:532176:-1 // ensembl // 11 // --- /// GENEFINDER00000022243 // cdna:GeneFinder chromosome:SGD1:II:530812:531735:-1 // ensembl // 11 // --- /// YBR143C // cdna:known chromosome:SGD1:II:530863:532176:-1 gene:YBR143C // ensembl // 11 // --- --- No cerevisiae_gene 1.33266803816155 -1.58715022362741 -1.0745510495565 -1.50015899129837 1.04184574552109 Max fold change below threshold 4 1.58715022362741 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769487_at YKL063C.S1 Hypothetical protein 1.58701232375998 452.187194824219 425.317672729492 --- --- 5794 // Golgi apparatus // inferred from direct assay --- 454.263641357422 518.68408203125 385.690307617188 396.371704101563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL063C /GEN=MNR2 /DB_XREF=GI:6322787 /SEG=NC_001143:-320660,321163 /DEF=Hypothetical ORF /NOTE=Ykl063cp; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001546 // span:37-56 // numtm:1 S0001546 // YKL063C SGDID:S0001546, Chr XI from 321163-320660, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023128 // cdna:GeneFinder chromosome:SGD1:XI:320660:321163:-1 // ensembl // 11 // --- /// YKL063C // cdna:known chromosome:SGD1:XI:320660:321163:-1 gene:YKL063C // ensembl // 11 // --- --- No cerevisiae_gene 1.58701232375998 1.14181289191741 -1.41730284477254 -1.17779376973169 -1.14605466701282 Max fold change below threshold 4 1.58701232375998 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779644_at SPMIT.03.S1 --- 1.58698673660813 --- --- --- --- 2.69016981124878 1.82144272327423 3.96096038818359 1.69514322280884 0.274170011281967 0.334473013877869 0.030273400247097 0.00805663969367743 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPMIT.03 /DEF=hypothetical protein --- --- --- --- --- --- SPMIT.03 // |||hypothetical protein|Schizosaccharomyces pombe|chr mitochondrial||Partial|Manual // sanger // 9 // --- --- No No 1.26553145818765 -1.47694449947508 1.06264128067894 1.47238303382228 -1.58698673660813 Max fold change below threshold 2 1.58698673660813 Max fold change below threshold APAPPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1771790_at SPAC27F1.10.S1 --- 1.58673751819056 --- --- --- --- 0.885689079761505 1.09883141517639 1.04102718830109 0.55818247795105 0.601073980331421 0.805419981479645 0.805419981479645 0.850341975688934 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27F1.10 /DEF=dubious --- --- --- --- --- --- SPAC27F1.10 // |||dubious|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.14667891795419 1.24065142078107 1.29175766688244 1.17538672666192 -1.58673751819056 Max fold change below threshold 0 1.58673751819056 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779674_at YPL063W.S1 Constituent of the mitochondrial inner membrane presequence translocase (TIM23 complex); may promote binding of incoming precursor proteins to the intermembrane space domain of Tom22p during translocation 1.58618969961119 664.507934570313 958.760528564453 TIM50 30150 // mitochondrial matrix protein import // inferred from direct assay 5744 // mitochondrial inner membrane presequence translocase complex // inferred from direct assay --- 979.759094238281 617.680908203125 711.3349609375 937.761962890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL063W /GEN=TIM50 /DB_XREF=GI:6325194 /SEG=NC_001148:+429934,431364 /DEF=Protein of the inner mitochondrial membrane, required for import of mitochondrial matrix proteins /NOTE=Tim50p; go_component: mitochondrial inner membrane presequence translocase complex [goid GO:0005744] [evidence IDA] [pmid 12437925]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitochondrial matrix protein import [goid GO:0030150] [evidence IDA] [pmid 12437925] --- --- --- --- --- --- S0005984 // TIM50 SGDID:S0005984, Chr XVI from 429936-431366, Verified ORF // sgd // 11 // --- /// GENSCAN00000017140 // cdna:Genscan chromosome:SGD1:XVI:429936:431366:1 // ensembl // 11 // --- /// GENEFINDER00000020830 // cdna:GeneFinder chromosome:SGD1:XVI:429936:431366:1 // ensembl // 11 // --- /// YPL063W // cdna:known chromosome:SGD1:XVI:429936:431366:1 gene:YPL063W // ensembl // 11 // --- --- No cerevisiae_gene -1.05445317442019 -1.58618969961119 1.02865140250603 -1.37735265105909 -1.0447844261226 Max fold change below threshold 4 1.58618969961119 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779141_at YGL130W.S1 mRNA guanylyltransferase (mRNA capping enzyme), alpha subunit; involved in the synthesis of the cap structure found at the 5'-end of mRNAs 1.58605238843798 351.275741577148 538.573913574219 CEG1 6370 // mRNA capping // traceable author statement /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 5634 // nucleus // inferred from physical interaction 4484 // mRNA guanylyltransferase activity // traceable author statement 535.083679199219 337.368225097656 365.183258056641 542.064147949219 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL130W /GEN=CEG1 /DB_XREF=GI:6321308 /SEG=NC_001139:+266148,267527 /DEF=mRNA guanylyltransferase (mRNA capping enzyme), alpha subunit /NOTE=Ceg1p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 9832501]; go_function: mRNA guanylyltransferase activity [goid GO:0004484] [evidence TAS] [pmid 9832501]; go_process: mRNA capping [goid GO:0006370] [evidence TAS] [pmid 9832501] --- --- --- --- --- --- S0003098 // CEG1 SGDID:S0003098, Chr VII from 266150-267529, Verified ORF // sgd // 10 // --- /// GENSCAN00000019252 // cdna:Genscan chromosome:SGD1:VII:266150:267529:1 // ensembl // 10 // --- /// GENEFINDER00000021684 // cdna:GeneFinder chromosome:SGD1:VII:266162:267529:1 // ensembl // 10 // --- /// YGL130W // cdna:known chromosome:SGD1:VII:266150:267529:1 gene:YGL130W // ensembl // 10 // --- --- No cerevisiae_gene -1.48073416406219 -1.58605238843798 1.20159736533615 -1.46524701610561 1.01304556468709 Max fold change below threshold 4 1.58605238843798 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771805_at YKL174C.S1 Protein involved in excretion of putrescine and spermidine; putative polyamine transporter in the Golgi or post-Golgi vesicles 1.58573165447819 676.356506347656 538.384643554688 TPO5 15846 // polyamine transport // inferred from mutant phenotype 5794 // Golgi apparatus // inferred from direct assay 15203 // polyamine transporter activity // inferred from mutant phenotype /// 15203 // polyamine transporter activity // inferred from sequence similarity 518.350891113281 671.625 681.088012695313 558.418395996094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL174C /GEN=ZRT3 /DB_XREF=GI:6322674 /SEG=NC_001143:-120385,122241 /DEF=Hypothetical ORF /NOTE=Ykl174cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001657 // span:62-84,88-110,141-163,178-200,212-231,255-277,298-317,343-365,403-422,426-448,468-490,500-519 // numtm:12 S0001657 // YKL174C SGDID:S0001657, Chr XI from 122241-120385, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023097 // cdna:GeneFinder chromosome:SGD1:XI:120385:121416:-1 // ensembl // 11 // --- /// YKL174C // cdna:known chromosome:SGD1:XI:120385:122241:-1 gene:YKL174C // ensembl // 11 // --- GENSCAN00000018290 // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene -1.58573165447819 1.29569566005284 1.1970118670697 1.31395165779018 1.07729803414972 Max fold change below threshold 4 1.58573165447819 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772003_at YNR050C.S1 Saccharopine dehydrogenase (NADP+, L-glutamate-forming); catalyzes the formation of saccharopine from alpha-aminoadipate 6-semialdehyde, which is the seventh step in lysine biosynthesis pathway 1.58553397534472 638.80712890625 873.402496337891 LYS9 19878 // lysine biosynthesis, aminoadipic pathway // traceable author statement 5737 // cytoplasm // inferred from direct assay 4755 // saccharopine dehydrogenase (NADP+, L-glutamate-forming) activity // traceable author statement 857.557250976563 643.907531738281 633.706726074219 889.247741699219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR050C /GEN=LYS9 /DB_XREF=GI:6324378 /SEG=NC_001146:-714047,715387 /DEF=Seventh step in lysine biosynthesis pathway /NOTE=Lys9p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: saccharopine dehydrogenase (NADP+, L-glutamate-forming) activity [goid GO:0004755] [evidence TAS] [pmid 3123231]; go_process: lysine biosynthesis, aminoadipic pathway [goid GO:0019878] [evidence TAS] [pmid 3928261] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 1.70000004768372 --- S0005333 // LYS9 SGDID:S0005333, Chr XIV from 715388-714048, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020077 // cdna:Genscan chromosome:SGD1:XIV:714048:715388:-1 // ensembl // 11 // --- /// GENEFINDER00000020616 // cdna:GeneFinder chromosome:SGD1:XIV:714048:715388:-1 // ensembl // 11 // --- /// YNR050C // cdna:known chromosome:SGD1:XIV:714048:715388:-1 gene:YNR050C // ensembl // 11 // --- --- No cerevisiae_gene 1.58553397534472 -1.33180186394391 -1.12344960363234 -1.35323993843191 1.03695437323464 Max fold change below threshold 4 1.58553397534472 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778524_at YBR007C.S1 --- 1.58549471923035 245.389137268066 402.932281494141 --- --- --- --- 378.178497314453 238.523971557617 252.254302978516 427.686065673828 0.000732421991415322 0.018554700538516 0.0107421996071935 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR007C /GEN=UGA2 /DB_XREF=GI:6319479 /SEG=NC_001134:-248769,250979 /DEF=Hypothetical ORF /NOTE=Ybr007cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000211 // YBR007C SGDID:S0000211, Chr II from 251017-248807, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021144 // cdna:Genscan chromosome:SGD1:II:248807:251017:-1 // ensembl // 11 // --- /// GENEFINDER00000022321 // cdna:GeneFinder chromosome:SGD1:II:248807:249976:-1 // ensembl // 11 // --- /// YBR007C // cdna:known chromosome:SGD1:II:248807:251017:-1 gene:YBR007C // ensembl // 11 // --- --- No cerevisiae_gene -1.19918738445674 -1.58549471923035 -1.35910463835892 -1.49919542639739 1.13091058510979 Max fold change below threshold 4 1.58549471923035 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1771639_at YLR410W.S1 Protein of unknown function probably involved in the function of the cortical actin cytoskeleton; putative ortholog of S. pombe asp1+ 1.58527593452236 1656.84527587891 2346.04772949219 VIP1 30036 // actin cytoskeleton organization and biogenesis // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay --- 2475.17944335938 1752.3349609375 1561.35559082031 2216.916015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR410W /GEN=VIP1 /DB_XREF=GI:6323442 /SEG=NC_001144:+937538,940978 /DEF=Homologous to S. pombe asp1+ /NOTE=Vip1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence IGI] [pmid 10388810] --- --- --- --- --- --- S0004402 // VIP1 SGDID:S0004402, Chr XII from 937538-940978, Verified ORF // sgd // 11 // --- /// GENSCAN00000018127 // cdna:Genscan chromosome:SGD1:XII:937538:940978:1 // ensembl // 11 // --- /// GENEFINDER00000024640 // cdna:GeneFinder chromosome:SGD1:XII:937538:940978:1 // ensembl // 11 // --- /// YLR410W // cdna:known chromosome:SGD1:XII:937538:940978:1 gene:YLR410W // ensembl // 11 // --- --- No cerevisiae_gene -1.57979706090791 -1.41250360150045 -1.0796847697274 -1.58527593452236 -1.11649671251149 Max fold change below threshold 4 1.58527593452236 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774313_at YPL217C.S1 Essential conserved nucleolar GTP-binding protein required for synthesis of 40S ribosomal subunits and for processing of the 35S pre-rRNA at sites A0, A1, and A2; interacts with Rcl1p, has similarity to Tsr1p 1.58452679935168 402.456970214844 611.637115478516 BMS1 6364 // rRNA processing // inferred from direct assay /// 6365 // 35S primary transcript processing // inferred from direct assay /// 42255 // ribosome assembly // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 5525 // GTP binding // traceable author statement 579.838500976563 438.975982666016 365.937957763672 643.435729980469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL217C /GEN=BMS1 /DB_XREF=GI:6325039 /SEG=NC_001148:-139619,143170 /DEF=GTP-binding protein required for processing of 35S pre-rRNA at sites A0, /NOTE=Bms1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10684247]; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 10684247]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10684247]; go_function: GTP binding [goid GO:0005525] [evidence TAS] [pmid 11565749]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence IDA] [pmid 11565748]; go_process: rRNA processing [goid GO:0006364] [evidence IDA] [pmid 11565749]; go_process: ribosome assembly [goid GO:0042255] [evidence IDA] [pmid 11565749] --- --- --- --- --- --- S0006138 // BMS1 SGDID:S0006138, Chr XVI from 143170-139619, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017021 // cdna:Genscan chromosome:SGD1:XVI:139619:143170:-1 // ensembl // 11 // --- /// GENEFINDER00000021046 // cdna:GeneFinder chromosome:SGD1:XVI:139619:143170:-1 // ensembl // 11 // --- /// YPL217C // cdna:known chromosome:SGD1:XVI:139619:143170:-1 gene:YPL217C // ensembl // 11 // --- --- No cerevisiae_gene 1.5322718538824 -1.32088889568639 -1.15930467155873 -1.58452679935168 1.10968093511693 Max fold change below threshold 4 1.58452679935168 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778977_at YJR101W.S1 Mitochondrial ribosomal protein of the small subunit 1.58433536855077 1395.31091308594 1108.07586669922 RSM26 6412 // protein biosynthesis // inferred from direct assay 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // inferred from direct assay 1064.70727539063 1335.65832519531 1454.96350097656 1151.44445800781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR101W /GEN=RSM26 /DB_XREF=GI:6322561 /SEG=NC_001142:+618148,618948 /DEF=Mitochondrial ribosomal protein of the small subunit /NOTE=Rsm26p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 11278769]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 11278769]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 11278769] --- --- --- --- --- --- S0003862 // RSM26 SGDID:S0003862, Chr X from 618148-618948, Verified ORF // sgd // 11 // --- /// GENSCAN00000024212 // cdna:Genscan chromosome:SGD1:X:618148:618948:1 // ensembl // 11 // --- /// YJR101W // cdna:known chromosome:SGD1:X:618148:618948:1 gene:YJR101W // ensembl // 11 // --- --- No cerevisiae_gene 1.58433536855077 1.25448407845741 1.18550238349055 1.36653851683577 1.08146575553864 Max fold change below threshold 4 1.58433536855077 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776070_at SPBC609.01.S1 --- 1.58429354077084 --- --- --- --- 9.36345863342285 14.0322179794312 11.2485809326172 5.91017913818359 0.149657994508743 0.0375977009534836 0.0375977009534836 0.018554700538516 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC609.01 /DEF=ribonuclease II (RNB) family --- --- --- --- --- --- SPBC609.01 // |||ribonuclease II |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.55009808201314 1.49861483120598 1.08865650645356 1.20132756206829 -1.58429354077084 Max fold change below threshold 4 1.58429354077084 Max fold change below threshold AAPAPP No 4 0 APPP 1 3 0 No No 2 < x = 3
1777237_at YLR044C.S1 Major of three pyruvate decarboxylase isozymes, key enzyme in alcoholic fermentation, decarboxylates pyruvate to acetaldehyde; subject to glucose-, ethanol-, and autoregulation; involved in amino acid catabolism 1.58426238320307 7742.798828125 7220.76538085938 PDC1 6090 // pyruvate metabolism // traceable author statement /// 19655 // ethanol fermentation // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4737 // pyruvate decarboxylase activity // traceable author statement 8853.2705078125 9753.236328125 5732.361328125 5588.26025390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR044C /GEN=PDC1 /DB_XREF=GI:6323073 /SEG=NC_001144:-232391,234082 /DEF=pyruvate decarboxylase /NOTE=Pdc1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: pyruvate decarboxylase activity [goid GO:0004737] [evidence TAS] [pmid 10231381]; go_process: ethanol fermentation [goid GO:0019655] [evidence TAS] [pmid 10231381]; go_process: pyruvate metabolism [goid GO:0006090] [evidence TAS] [pmid 10231381] --- --- --- --- --- --- S0004034 // PDC1 SGDID:S0004034, Chr XII from 234082-232391, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017855 // cdna:Genscan chromosome:SGD1:XII:232391:234082:-1 // ensembl // 11 // --- /// GENEFINDER00000024667 // cdna:GeneFinder chromosome:SGD1:XII:232391:234082:-1 // ensembl // 11 // --- /// YLR044C // cdna:known chromosome:SGD1:XII:232391:234082:-1 gene:YLR044C // ensembl // 11 // --- --- No cerevisiae_gene -1.34129328457436 1.10165348720773 -1.26494872497354 -1.54443692590961 -1.58426238320307 Max fold change below threshold 4 1.58426238320307 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778679_at YJL203W.S1 Subunit of the SF3a splicing factor complex, required for spliceosome assembly 1.58414125939447 128.638607025146 197.981666564941 PRP21 398 // nuclear mRNA splicing, via spliceosome // inferred from direct assay 5686 // snRNP U2 // inferred from direct assay 3723 // RNA binding // inferred from direct assay 175.835235595703 115.084312438965 142.192901611328 220.12809753418 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL203W /GEN=PRP21 /DB_XREF=GI:6322258 /SEG=NC_001142:+53341,54183 /DEF=Subunit of the SF3a splicing factor complex, required for spliceosome assembly /NOTE=Prp21p; go_component: snRNP U2 [goid GO:0005686] [evidence IDA] [pmid 11804584]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 8065365]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IDA] [pmid 8969185] --- --- --- --- --- --- S0003739 // PRP21 SGDID:S0003739, Chr X from 53341-54183, Verified ORF // sgd // 11 // --- /// GENSCAN00000023986 // cdna:Genscan chromosome:SGD1:X:53341:54183:1 // ensembl // 11 // --- /// GENEFINDER00000024324 // cdna:GeneFinder chromosome:SGD1:X:53341:54183:1 // ensembl // 11 // --- /// YJL203W // cdna:known chromosome:SGD1:X:53341:54183:1 gene:YJL203W // ensembl // 11 // --- YJL202C // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene 1.12645621509644 -1.52788187954772 1.58414125939447 -1.23659643767826 1.25189980715992 Max fold change below threshold 4 1.58414125939447 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772816_at YDR499W.S1 Essential protein required for the DNA integrity checkpoint pathways; interacts physically with Mec1p; putative homolog of S. pombe Rad26 and human ATRIP 1.58405293298922 103.618911743164 168.055656433105 LCD1 77 // DNA damage checkpoint // inferred from mutant phenotype /// 77 // DNA damage checkpoint // inferred from physical interaction /// 7004 // telomerase-dependent telomere maintenance // inferred from mutant phenotype /// 45184 // establishment of protein localization // inferred from direct assay /// 45184 // establishment of protein localization // inferred from mutant phenotype 228 // nuclear chromosome // inferred from direct assay 3684 // damaged DNA binding // inferred from direct assay /// 5515 // protein binding // inferred from direct assay 149.982482910156 112.555076599121 94.682746887207 186.128829956055 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR499W /GEN=LCD1 /DB_XREF=GI:6320707 /SEG=NC_001136:+1447818,1450061 /DEF=required for the DNA integrity checkpoint pathways; S. pombe Rad26 functional homolog (putative), homolog of human ATRIP /NOTE=Lcd1p; go_component: nuclear chromosome [goid GO:0000228] [evidence IDA] [pmid 11983176]; go_function: damaged DNA binding [goid GO:0003684] [evidence IDA] [pmid 11983176]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 11983176]; go_process: DNA damage response, signal transduction resulting in cell cycle arrest [goid GO:0000077] [evidence IMP,IPI] [pmid 11060031]; go_process: establishment of protein localization [goid GO:0045184] [evidence IDA,IMP] [pmid 11983176]; go_process: telomerase-dependent telomere maintenance [goid GO:0007004] [evidence IMP] [pmid 12181334] --- --- --- --- --- --- S0002907 // LCD1 SGDID:S0002907, Chr IV from 1447820-1450063, Verified ORF // sgd // 11 // --- /// GENSCAN00000025491 // cdna:Genscan chromosome:SGD1:IV:1447820:1450063:1 // ensembl // 11 // --- /// GENEFINDER00000023953 // cdna:GeneFinder chromosome:SGD1:IV:1448207:1450063:1 // ensembl // 11 // --- /// YDR499W // cdna:known chromosome:SGD1:IV:1447820:1450063:1 gene:YDR499W // ensembl // 11 // --- --- No cerevisiae_gene -1.13168118333813 -1.33252526178217 1.55692091320886 -1.58405293298922 1.24100379153978 Max fold change below threshold 4 1.58405293298922 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773538_at YCR028C-A.S1 Single-stranded DNA-binding protein that is essential for mitochondrial genome maintenance; Single-stranded zinc finger DNA-binding protein 1.58395527197503 2512.50183105469 2073.08874511719 RIM1 2 // mitochondrial genome maintenance // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 42645 // mitochondrial nucleoid // inferred from direct assay 3697 // single-stranded DNA binding // inferred from sequence similarity 2064.60498046875 2569.52856445313 2455.47509765625 2081.57250976563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR028C-A /GEN=RIM1 /DB_XREF=GI:10383791 /SEG=NC_001135:-172945,173435 /DEF=Single-stranded DNA-binding protein that is essential for mitochondrial genome maintenance /NOTE=Rim1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 1324172]; go_function: single-stranded DNA binding [goid GO:0003697] [evidence ISS] [pmid 1324172]; go_process: mitochondrial genome maintenance [goid GO:0000002] [evidence IMP] [pmid 1324172] --- --- --- --- --- --- S0007222 // RIM1 SGDID:S0007222, Chr III from 173435-173194,173110-172945, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YCR028C-A // cdna:known chromosome:SGD1:III:172945:173435:-1 gene:YCR028C-A // ensembl // 11 // --- S43129 // gb // 3 // Cross Hyb Matching Probes /// GENEFINDER00000023404 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 1.58395527197503 1.24456183568333 1.27097853019799 1.18931956518809 1.00821829330908 Max fold change below threshold 4 1.58395527197503 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777464_at YGL230C.S1 Hypothetical protein 1.58386751098985 100.441284179688 94.9440803527832 --- --- --- --- 101.077995300293 118.977890014648 81.9046783447266 88.8101654052734 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL230C /GEN=TAN1 /DB_XREF=GI:6321207 /SEG=NC_001139:-63771,64214 /DEF=Hypothetical ORF /NOTE=Ygl230cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003199 // span:85-107 // numtm:1 S0003199 // YGL230C SGDID:S0003199, Chr VII from 64215-63772, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000021686 // cdna:GeneFinder chromosome:SGD1:VII:63772:64215:-1 // ensembl // 11 // --- /// YGL230C // cdna:known chromosome:SGD1:VII:63772:64215:-1 gene:YGL230C // ensembl // 11 // --- --- No cerevisiae_gene 1.27169689840242 1.1770899260633 -1.58386751098985 -1.23409306211873 -1.1381354244645 Max fold change below threshold 4 1.58386751098985 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769544_at YLR149C.S1 Hypothetical protein 1.5838344039664 4083.29614257813 3236.94262695313 --- --- --- --- 3519.09985351563 4601.0146484375 3565.57763671875 2954.78540039063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR149C /GEN=PEP3 /DB_XREF=GI:6323178 /SEG=NC_001144:-437632,439824 /DEF=Hypothetical ORF /NOTE=Ylr149cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004139 // YLR149C SGDID:S0004139, Chr XII from 439824-437632, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017935 // cdna:Genscan chromosome:SGD1:XII:437632:439824:-1 // ensembl // 11 // --- /// GENEFINDER00000024653 // cdna:GeneFinder chromosome:SGD1:XII:437632:438702:-1 // ensembl // 11 // --- /// YLR149C // cdna:known chromosome:SGD1:XII:437632:439824:-1 gene:YLR149C // ensembl // 11 // --- --- No cerevisiae_gene -1.5838344039664 1.30744077745933 1.03057006224334 1.01320729309704 -1.19098322776686 Max fold change below threshold 4 1.5838344039664 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772039_at SPCC16C4.19.S1 --- 1.58368126844385 --- --- --- --- 3.04828405380249 3.06139254570007 2.08962678909302 1.96901619434357 0.533936023712158 0.533936023712158 0.633789002895355 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC16C4.19 /DEF=RNA-binding protein (predicted) --- --- --- --- --- --- SPCC16C4.19 // ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.40547032204909 1.00430028555942 1.58368126844385 -1.45876960886665 -1.54812543571727 Max fold change below threshold 2 1.58368126844385 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1780224_at YFR037C.S1 One of 15 subunits of the 'Remodel the Structure of Chromatin' (RSC) complex; essential for viability and mitotic growth; homolog of SWI/SNF subunit Swi3p, but unlike Swi3p, does not activate transcription of reporters 1.58367672282726 499.52294921875 737.684722900391 RSC8 6338 // chromatin remodeling // inferred from sequence similarity /// 6338 // chromatin remodeling // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 16586 // RSC complex // inferred from physical interaction --- 723.607482910156 471.000427246094 528.045471191406 751.761962890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR037C /GEN=RSC8 /DB_XREF=GI:14318562 /SEG=NC_001138:-227500,229173 /DEF=8th largest subunit of RSC. Rsc8p mediates multiple RSC complex interactions, undergoes dimerization via the C-term coiled-coil segment, associates with SWI2/SNF2 ATPase Sth1p, forms a complex with RSC6p. /NOTE=Rsc8p; go_component: nucleosome remodeling complex [goid GO:0005679] [evidence IPI] [pmid 10025404]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 10025404]; go_process: chromatin remodeling [goid GO:0006338] [evidence ISS] [pmid 8980231] --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 0.660000026226044 --- S0001933 // RSC8 SGDID:S0001933, Chr VI from 229173-227500, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018553 // cdna:GeneFinder chromosome:SGD1:VI:227230:229173:-1 // ensembl // 11 // --- /// GENSCAN00000023275 // cdna:Genscan chromosome:SGD1:VI:227230:229173:-1 // ensembl // 11 // --- /// YFR037C // cdna:known chromosome:SGD1:VI:227500:229173:-1 gene:YFR037C // ensembl // 11 // --- YFR036W-A // ensembl // 10 // Negative Strand Matching Probes No cerevisiae_gene 1.58367672282726 -1.53632022616421 1.21510680409275 -1.37035070346785 1.03890849755622 Max fold change below threshold 4 1.58367672282726 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773212_at YBR167C.S1 Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends 1.58351107823608 327.807418823242 512.388748168945 POP7 6364 // rRNA processing // traceable author statement /// 8033 // tRNA processing // traceable author statement 172 // ribonuclease MRP complex // inferred from direct assay /// 5655 // nucleolar ribonuclease P complex // inferred from direct assay 171 // ribonuclease MRP activity // inferred from direct assay /// 4526 // ribonuclease P activity // inferred from direct assay 456.732330322266 367.184692382813 288.430145263672 568.045166015625 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR167C /GEN=POP7 /DB_XREF=GI:6319644 /SEG=NC_001134:-571425,571847 /DEF=Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends /NOTE=Pop7p; go_component: nucleolar ribonuclease P complex [goid GO:0005655] [evidence IDA] [pmid 9620854]; go_component: ribonuclease MRP complex [goid GO:0000172] [evidence IDA] [pmid 9620854]; go_function: ribonuclease MRP activity [goid GO:0000171] [evidence IDA] [pmid 9620854]; go_function: ribonuclease P activity [goid GO:0004526] [evidence IDA] [pmid 9620854]; go_process: rRNA processing [goid GO:0006364] [evidence TAS] [pmid 9620854]; go_process: tRNA processing [goid GO:0008033] [evidence TAS] [pmid 9620854] --- --- --- --- --- --- S0000371 // POP7 SGDID:S0000371, Chr II from 571885-571463, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021274 // cdna:Genscan chromosome:SGD1:II:571463:571885:-1 // ensembl // 11 // --- /// GENEFINDER00000022175 // cdna:GeneFinder chromosome:SGD1:II:571463:571885:-1 // ensembl // 11 // --- /// YBR167C // cdna:known chromosome:SGD1:II:571463:571885:-1 gene:YBR167C // ensembl // 11 // --- --- No cerevisiae_gene -1.10733270467451 -1.2438762829636 1.20206144443431 -1.58351107823608 1.24371569145284 Max fold change below threshold 4 1.58351107823608 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771881_at YFR001W.S1 Nuclear protein involved in asymmetric localization of ASH1 mRNA; binds double-stranded RNA in vitro; constituent of 66S pre-ribosomal particles 1.58336058558862 355.877685546875 314.174301147461 LOC1 8298 // intracellular mRNA localization // inferred from mutant phenotype /// 42273 // ribosomal large subunit biogenesis // inferred from mutant phenotype /// 42273 // ribosomal large subunit biogenesis // inferred from physical interaction 5634 // nucleus // inferred from direct assay 3729 // mRNA binding // inferred from direct assay /// 3729 // mRNA binding // inferred from physical interaction 290.40625 373.091003417969 338.664367675781 337.942352294922 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR001W /GEN=LOC1 /DB_XREF=GI:14318523 /SEG=NC_001138:+149105,149719 /DEF=Localization of mRNA /NOTE=Loc1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11309412]; go_function: mRNA binding [goid GO:0003729] [evidence IDA,IPI] [pmid 11309412]; go_process: ribosomal large subunit biogenesis [goid GO:0042273] [evidence IMP,IPI] [pmid 11583614] --- --- --- --- --- --- S0001897 // LOC1 SGDID:S0001897, Chr VI from 149105-149719, Verified ORF // sgd // 9 // --- /// GENEFINDER00000018522 // cdna:GeneFinder chromosome:SGD1:VI:149105:149719:1 // ensembl // 9 // --- /// YFR001W // cdna:known chromosome:SGD1:VI:149105:149719:1 gene:YFR001W // ensembl // 9 // --- --- No cerevisiae_gene 1.58336058558862 1.28472098454482 1.46685740443075 1.16617451475573 1.16368828940466 Max fold change below threshold 4 1.58336058558862 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772955_at YBR062C.S1 Hypothetical protein 1.58332133688683 1689.42407226563 1654.29187011719 --- --- --- --- 1594.33239746094 1565.52185058594 1813.32629394531 1714.25134277344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR062C /GEN=TRM7 /DB_XREF=GI:6319536 /SEG=NC_001134:-365936,366283 /DEF=Hypothetical ORF /NOTE=Ybr062cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000266 // YBR062C SGDID:S0000266, Chr II from 366598-366583,366500-365974, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YBR062C // cdna:known chromosome:SGD1:II:365974:366598:-1 gene:YBR062C // ensembl // 11 // --- --- No cerevisiae_gene -1.58332133688683 -1.01840315857886 1.02430951434643 1.13735774097869 1.07521577401518 Max fold change below threshold 4 1.58332133688683 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777604_at YBR188C.S1 Member of a complex, including Prp19p, that binds to the spliceosome; required for pre-mRNA splicing 1.5828896095602 194.718399047852 306.968460083008 NTC20 398 // nuclear mRNA splicing, via spliceosome // inferred from genetic interaction /// 398 // nuclear mRNA splicing, via spliceosome // inferred from direct assay 5681 // spliceosome complex // inferred from direct assay /// 5681 // spliceosome complex // inferred from genetic interaction 31202 // RNA splicing factor activity, transesterification mechanism // inferred from mutant phenotype 294.987670898438 203.076568603516 186.360229492188 318.949249267578 0.018554700538516 0.018554700538516 0.018554700538516 0.0239257998764515 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR188C /GEN=NTC20 /DB_XREF=GI:6319665 /SEG=NC_001134:-603642,604064 /DEF=Member of a complex, including Prp19p, that binds to the spliceosome; required for pre-mRNA splicing /NOTE=Ntc20p; go_component: spliceosome complex [goid GO:0005681] [evidence IDA,IGI] [pmid 11018040]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IMP] [pmid 12384582]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IDA,IGI] [pmid 11018040] --- --- --- --- --- --- S0000392 // NTC20 SGDID:S0000392, Chr II from 604102-603680, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021291 // cdna:Genscan chromosome:SGD1:II:603680:604102:-1 // ensembl // 11 // --- /// YBR188C // cdna:known chromosome:SGD1:II:603680:604102:-1 gene:YBR188C // ensembl // 11 // --- --- No cerevisiae_gene -1.03491812651365 -1.45259333918709 1.19347691057334 -1.5828896095602 1.0812290842399 Max fold change below threshold 4 1.5828896095602 Max fold change below threshold PPPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1777123_at YLR228C.S1 Sterol regulatory element binding protein, regulates transcription of the sterol biosynthetic genes ERG2 and ERG3; member of the fungus-specific Zn[2]-Cys[6] binuclear cluster family of transcription factors; homologous to Upc2p 1.58283177596682 613.509216308594 472.881851196289 ECM22 16126 // sterol biosynthesis // inferred from mutant phenotype 5634 // nucleus // inferred from physical interaction 3702 // RNA polymerase II transcription factor activity // inferred from direct assay 440.872283935547 529.191772460938 697.82666015625 504.891418457031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR228C /GEN=ECM22 /DB_XREF=GI:6323257 /SEG=NC_001144:-600021,602465 /DEF=Sterol regulatory element binding protein, regulates transcription of the sterol biosynthetic genes ERG2 and ERG3; member of the fungus-specific Zn[2]-Cys[6] binuclear cluster family of transcription factors; homologous to Upc2p /NOTE=Ecm22p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 11533229]; go_function: RNA polymerase II transcription factor activity [goid GO:0003702] [evidence IDA] [pmid 11533229]; go_process: sterol biosynthesis [goid GO:0016126] [evidence IMP] [pmid 11533229] --- --- --- --- --- --- S0004218 // ECM22 SGDID:S0004218, Chr XII from 602465-600021, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017999 // cdna:Genscan chromosome:SGD1:XII:600021:601841:-1 // ensembl // 11 // --- /// GENEFINDER00000024562 // cdna:GeneFinder chromosome:SGD1:XII:600021:601841:-1 // ensembl // 11 // --- /// YLR228C // cdna:known chromosome:SGD1:XII:600021:602465:-1 gene:YLR228C // ensembl // 11 // --- --- No cerevisiae_gene 1.31306545258738 1.20032896542506 -1.0017857599788 1.58283177596682 1.14521015916447 Max fold change below threshold 4 1.58283177596682 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779774_at YLR247C.S1 Hypothetical protein 1.58276885468079 1001.71142578125 770.186401367188 --- --- 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4386 // helicase activity // inferred from sequence similarity 721.281311035156 1006.37017822266 997.052673339844 819.091491699219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR247C /GEN=ERF2 /DB_XREF=GI:6323276 /SEG=NC_001144:-628686,633356 /DEF=Hypothetical ORF /NOTE=Ylr247cp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: helicase activity [goid GO:0004386] [evidence ISS] [pmid 10077188]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.1.Myb // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb // 2.40000009536743 --- S0004237 // YLR247C SGDID:S0004237, Chr XII from 633356-628686, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018011 // cdna:Genscan chromosome:SGD1:XII:628686:633356:-1 // ensembl // 11 // --- /// GENEFINDER00000024914 // cdna:GeneFinder chromosome:SGD1:XII:628686:632180:-1 // ensembl // 11 // --- /// YLR247C // cdna:known chromosome:SGD1:XII:628686:633356:-1 gene:YLR247C // ensembl // 11 // --- --- No cerevisiae_gene -1.58276885468079 1.39525336761929 1.01179380735628 1.38233537745337 1.13560614862416 Max fold change below threshold 4 1.58276885468079 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773751_at YDL233W.S1 Hypothetical protein 1.58275949196945 510.223785400391 481.833145141602 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 448.474090576172 443.241333007813 577.206237792969 515.192199707031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL233W /GEN=GYP7 /DB_XREF=GI:6319968 /SEG=NC_001136:+36798,38174 /DEF=Hypothetical ORF /NOTE=Ydl233wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002392 // YDL233W SGDID:S0002392, Chr IV from 36798-38174, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024928 // cdna:Genscan chromosome:SGD1:IV:36798:38174:1 // ensembl // 11 // --- /// YDL233W // cdna:known chromosome:SGD1:IV:36798:38174:1 gene:YDL233W // ensembl // 11 // --- --- No cerevisiae_gene -1.58275949196945 -1.01180566246575 1.35372651363173 1.28704478123008 1.14876691994658 Max fold change below threshold 4 1.58275949196945 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-YFL039C5_at AFFX-YFL039C5 Actin, structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions 1.58253658312232 2793.66748046875 3489.99304199219 ACT1 1 // mitochondrion inheritance // traceable author statement /// 11 // vacuole inheritance // traceable author statement /// 132 // establishment of mitotic spindle orientation // traceable author statement /// 910 // cytokinesis // traceable author statement /// 1300 // chronological cell aging // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 6887 // exocytosis // traceable author statement /// 6897 // endocytosis // traceable author statement /// 6970 // response to osmotic stress // traceable author statement /// 7047 // cell wall organization and biogenesis // traceable author statement /// 7119 // budding cell isotropic bud growth // traceable author statement /// 9306 // protein secretion // traceable author statement /// 16573 // histone acetylation // inferred from direct assay /// 30037 // actin filament reorganization during cell cycle // traceable author statement /// 30050 // vesicle transport along actin filament // traceable author statement /// 30437 // sporulation (sensu Fungi) // traceable author statement /// 30468 // establishment of cell polarity (sensu Fungi) // traceable author statement 123 // histone acetyltransferase complex // inferred from direct assay /// 142 // contractile ring (sensu Saccharomyces) // traceable author statement /// 812 // SWR1 complex // inferred from physical interaction /// 5884 // actin filament // traceable author statement /// 30479 // actin cortical patch // traceable author statement /// 30482 // actin cable // traceable author statement /// 31011 // INO80 complex // inferred from physical interaction /// 43189 // H4/H2A histone acetyltransferase complex // inferred from physical interaction 5200 // structural constituent of cytoskeleton // traceable author statement 3780.24755859375 2388.72680664063 3198.60815429688 3199.73852539063 2.57263765846005E-10 2.57207921627867E-10 2.57263765846005E-10 2.57263765846005E-10 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /GEN=ACT1 /DB_XREF=gb:V01288.1 /DB_XREF=spd:YFL039C /NOTE=SIF corresponding to nucleotides 425-723 of gb:V01288.1 /DEF=Yeast gene for actin. --- --- --- --- --- --- S0001855 // ACT1 SGDID:S0001855, Chr VI from 54695-54686,54377-53260, reverse complement, intron sequence removed, Verified ORF // sgd // 51 // --- /// GENEFINDER00000018587 // cdna:GeneFinder chromosome:SGD1:VI:53260:54342:-1 // ensembl // 47 // --- /// GENSCAN00000023208 // cdna:Genscan chromosome:SGD1:VI:53260:54342:-1 // ensembl // 47 // --- /// YFL039C // cdna:known chromosome:SGD1:VI:53260:54695:-1 gene:YFL039C // ensembl // 51 // --- --- AFFX_control cerevisiae_gene -1.10264110844248 -1.58253658312232 -1.19891567230601 -1.18184140608643 -1.18142389717055 Max fold change below threshold 4 1.58253658312232 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775421_at YHR138C.S1 Homologous to PBI2 1.58207121821041 5185.73156738281 4433.28210449219 --- 42144 // vacuole fusion, non-autophagic // inferred from genetic interaction --- 4866 // endopeptidase inhibitor activity // inferred from sequence similarity /// 4866 // endopeptidase inhibitor activity // inferred from genetic interaction 5052.99951171875 6523.1044921875 3848.35864257813 3813.56469726563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR138C /GEN=ARO9 /DB_XREF=GI:6321930 /SEG=NC_001140:-377356,377700 /DEF=Homologous to PBI2 /NOTE=Yhr138cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: endopeptidase inhibitor activity [goid GO:0004866] [evidence ISS,IGI] [pmid 9657146]; go_process: vacuole fusion, non-autophagic [goid GO:0042144] [evidence IGI] [pmid 9657146] --- --- --- --- --- S0001180 // span:5-27 // numtm:1 S0001180 // YHR138C SGDID:S0001180, Chr VIII from 377701-377357, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016669 // cdna:Genscan chromosome:SGD1:VIII:377357:377656:-1 // ensembl // 9 // --- /// YHR138C // cdna:known chromosome:SGD1:VIII:377357:377701:-1 gene:YHR138C // ensembl // 11 // --- --- No cerevisiae_gene -1.58207121821041 1.2909370913374 -1.21303550896583 -1.31302718406037 -1.32500689324658 Max fold change below threshold 4 1.58207121821041 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772541_at YEL050C.S1 Mitochondrial ribosomal protein of the large subunit, has similarity to E. coli L2 ribosomal protein; fat21 mutant allele causes inability to utilize oleate and may interfere with activity of the Adr1p transcription factor 1.58198544329854 523.249389648438 756.209167480469 RML2 6412 // protein biosynthesis // traceable author statement /// 6631 // fatty acid metabolism // inferred from mutant phenotype 5762 // mitochondrial large ribosomal subunit // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 718.157470703125 453.959594726563 592.539184570313 794.260864257813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL050C /GEN=RML2 /DB_XREF=GI:6320785 /SEG=NC_001137:-59670,60851 /DEF=Mitochondrial ribosomal protein of the large subunit, has similarity to E. coli L2 ribosomal protein; fat21 mutant allele causes inability to utilize oleate and may interfere with activity of the Adr1p transcription factor /NOTE=Rml2p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: fatty acid metabolism [goid GO:0006631] [evidence IMP] [pmid 10320805]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0000776 // RML2 SGDID:S0000776, Chr V from 60851-59670, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016763 // cdna:Genscan chromosome:SGD1:V:59670:60851:-1 // ensembl // 11 // --- /// YEL050C // cdna:known chromosome:SGD1:V:59670:60851:-1 gene:YEL050C // ensembl // 11 // --- --- No cerevisiae_gene 1.01143418844271 -1.58198544329854 1.22407076078003 -1.2119999645659 1.10597034307835 Max fold change below threshold 4 1.58198544329854 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774257_at YER014C-A.S1 Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern 1.58150237342976 60.2436904907227 91.1816864013672 BUD25 282 // bud site selection // inferred from mutant phenotype --- --- 91.6179351806641 57.9309501647949 62.5564308166504 90.7454376220703 0.00292969006113708 0.018554700538516 0.00805663969367743 0.00585938012227416 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER014C-A /GEN=BUD25 /DB_XREF=GI:13112038 /SEG=NC_001137:-183730,184699 /DEF=Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern /NOTE=Bud25p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: bud site selection [goid GO:0000282] [evidence IMP] [pmid 11452010] --- --- --- --- --- --- S0007590 // BUD25 SGDID:S0007590, Chr V from 184699-184677,184168-183730, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YER014C-A // cdna:known chromosome:SGD1:V:183730:184699:-1 gene:YER014C-A // ensembl // 11 // --- S0000816 // sgd // 10 // Negative Strand Matching Probes /// GENSCAN00000016816 // ensembl // 10 // Negative Strand Matching Probes /// GENEFINDER00000019734 // ensembl // 10 // Negative Strand Matching Probes /// YER014W // ensembl // 10 // Negative Strand Matching Probes No cerevisiae_gene -1.44074186674128 -1.58150237342976 -1.05049595798767 -1.46456461765204 -1.00961478154117 Max fold change below threshold 4 1.58150237342976 Max fold change below threshold PPPPPP No 3 0 PPPP 0 4 0 No No 3 < x
1773328_at YKL004W.S1 Phosphatidylinositol:ceramide phosphoinositol transferase (IPC synthase), required for sphingolipid synthesis; can mutate to confer aureobasidin A resistance 1.58148474357385 3141.2529296875 2672.98181152344 AUR1 6665 // sphingolipid metabolism // inferred from mutant phenotype 5794 // Golgi apparatus // inferred from direct assay 45140 // inositol phosphoceramide synthase activity // inferred from direct assay 2981.38330078125 3630.02783203125 2652.47802734375 2364.58032226563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL004W /GEN=AUR1 /DB_XREF=GI:6322849 /SEG=NC_001143:+435223,436428 /DEF=Phosphatidylinositol:ceramide phosphoinositol transferase (IPC synthase), required for sphingolipid synthesis; can mutate to confer aureobasidin A resistance /NOTE=Aur1p; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 10888667]; go_function: inositol phosphoceramide synthase activity [goid GO:0045140] [evidence IDA] [pmid 9092515]; go_process: sphingolipid metabolism [goid GO:0006665] [evidence IMP] [pmid 9092515] --- --- --- --- --- S0001487 // span:45-67,79-101,150-172,179-201,246-268,275-297 // numtm:6 S0001487 // AUR1 SGDID:S0001487, Chr XI from 435223-436428, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023092 // cdna:GeneFinder chromosome:SGD1:XI:435223:436428:1 // ensembl // 11 // --- /// GENSCAN00000018414 // cdna:Genscan chromosome:SGD1:XI:435385:436428:1 // ensembl // 11 // --- /// YKL004W // cdna:known chromosome:SGD1:XI:435223:436428:1 gene:YKL004W // ensembl // 11 // --- --- No cerevisiae_gene 1.00203369772021 1.2175649575417 -1.58148474357385 -1.12399924525176 -1.26085093101199 Max fold change below threshold 4 1.58148474357385 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777449_at YIR014W.S1 Hypothetical protein 1.58123899865785 1043.35797119141 977.390045166016 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 964.50048828125 1258.68298339844 828.032958984375 990.279602050781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR014W /GEN=GAT4 /DB_XREF=GI:37362663 /SEG=NC_001141:+381083,381811 /DEF=Hypothetical ORF /NOTE=Yir014wp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001453 // YIR014W SGDID:S0001453, Chr IX from 381083-381811, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016487 // cdna:Genscan chromosome:SGD1:IX:380981:381811:1 // ensembl // 11 // --- /// GENEFINDER00000019006 // cdna:GeneFinder chromosome:SGD1:IX:380981:381811:1 // ensembl // 11 // --- /// YIR014W // cdna:known chromosome:SGD1:IX:381083:381811:1 gene:YIR014W // ensembl // 11 // --- --- No cerevisiae_gene -1.58123899865785 1.30501020859142 1.01677880592134 -1.16480929631625 1.02672794268406 Max fold change below threshold 4 1.58123899865785 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779526_at YOR114W.S1 Hypothetical protein 1.58107426781101 147.409767150879 173.270660400391 --- --- --- --- 166.447402954102 129.888626098633 164.930908203125 180.09391784668 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR114W /GEN=AZF1 /DB_XREF=GI:6324688 /SEG=NC_001147:+537570,538454 /DEF=Hypothetical ORF /NOTE=Yor114wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005640 // YOR114W SGDID:S0005640, Chr XV from 537570-538454, Uncharacterized ORF // sgd // 10 // --- /// YOR114W // cdna:known chromosome:SGD1:XV:537570:538454:1 gene:YOR114W // ensembl // 10 // --- --- No cerevisiae_gene -1.58107426781101 -1.28146249562843 -1.12047857143077 -1.00919472746193 1.08198694993361 Max fold change below threshold 4 1.58107426781101 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770312_at YOR266W.S1 Mitochondrial inner membrane protein involved in export of proteins from the mitochondrial matrix; overexpression of PNT1 confers resistance to the anti-Pneumocystis carinii drug pentamidine, and deletion confers increased sensitivity 1.58106120478866 76.1265258789063 113.502010345459 PNT1 7007 // inner mitochondrial membrane organization and biogenesis // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay --- 113.158660888672 71.5713348388672 80.6817169189453 113.845359802246 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR266W /GEN=PNT1 /DB_XREF=GI:6324840 /SEG=NC_001147:+821020,822291 /DEF=Involved in targeting of proteins to the mitochondrial inner membrane; Pentamidine resistance protein /NOTE=Pnt1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 10490599]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 10490599]; go_process: inner mitochondrial membrane organization and biogenesis [goid GO:0007007] [evidence IMP] [pmid 10490599] --- --- --- --- --- S0005792 // span:198-220 // numtm:1 S0005792 // PNT1 SGDID:S0005792, Chr XV from 821020-822291, Verified ORF // sgd // 11 // --- /// GENSCAN00000017697 // cdna:Genscan chromosome:SGD1:XV:821020:822291:1 // ensembl // 11 // --- /// GENEFINDER00000022572 // cdna:GeneFinder chromosome:SGD1:XV:821020:822291:1 // ensembl // 11 // --- /// YOR266W // cdna:known chromosome:SGD1:XV:821020:822291:1 gene:YOR266W // ensembl // 11 // --- --- No cerevisiae_gene -1.51754479934133 -1.58106120478866 1.30972903597454 -1.40253164173928 1.00606846093955 Max fold change below threshold 4 1.58106120478866 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777150_at YNL315C.S1 Molecular chaperone, required for the assembly of alpha and beta subunits into the F1 sector of mitochondrial F1F0 ATP synthase 1.58099417663567 703.023956298828 920.400756835938 ATP11 6461 // protein complex assembly // inferred from mutant phenotype /// 6461 // protein complex assembly // inferred from physical interaction 5759 // mitochondrial matrix // traceable author statement 51082 // unfolded protein binding // inferred from direct assay /// 51082 // unfolded protein binding // inferred from physical interaction 831.923400878906 526.202697753906 879.84521484375 1008.87811279297 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL315C /GEN=ATP11 /DB_XREF=GI:6324014 /SEG=NC_001146:-43323,44279 /DEF=Molecular chaperone, required for the assembly of alpha and beta subunits into the F1 sector of mitochondrial F1F0 ATP synthase /NOTE=Atp11p; go_component: mitochondrial matrix [goid GO:0005759] [evidence TAS] [pmid 10681564]; go_function: chaperone activity [goid GO:0003754] [evidence IPI] [pmid 10681564]; go_function: chaperone activity [goid GO:0003754] [evidence IDA] [pmid 12829692]; go_process: protein complex assembly [goid GO:0006461] [evidence IPI] [pmid 10681564]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP] [pmid 2142305] --- --- --- --- --- --- S0005259 // ATP11 SGDID:S0005259, Chr XIV from 44279-43323, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019790 // cdna:Genscan chromosome:SGD1:XIV:43323:44279:-1 // ensembl // 11 // --- /// GENEFINDER00000020608 // cdna:GeneFinder chromosome:SGD1:XIV:43323:44279:-1 // ensembl // 11 // --- /// YNL315C // cdna:known chromosome:SGD1:XIV:43323:44279:-1 gene:YNL315C // ensembl // 11 // --- --- No cerevisiae_gene -1.43013765810201 -1.58099417663567 1.54471167147326 1.05760363744332 1.21270553482101 Max fold change below threshold 4 1.58099417663567 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776530_at YOR324C.S1 Tail-anchored endoplasmic reticulum membrane protein that is a substrate of the phosphatase calcineurin, interacts with homolog Frt2p, promotes cell growth in conditions of high Na+, alkaline pH, and cell wall stress 1.58083020341102 239.797080993652 307.633148193359 FRT1 6950 // response to stress // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay --- 298.559814453125 247.890914916992 231.703247070313 316.706481933594 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR324C /GEN=PRO2 /DB_XREF=GI:6324901 /SEG=NC_001147:-923227,925035 /DEF=Exhibits physical and genetic interactions with TCP1 and FRT2; contains a C-terminal transmembrane domain and shows localization to the plasma membrane, the ER, and cytoplasmic vesicular or granule-like structures /NOTE=Yor324cp --- --- --- --- --- S0005851 // span:570-592 // numtm:1 S0005851 // FRT1 SGDID:S0005851, Chr XV from 925035-923227, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017778 // cdna:Genscan chromosome:SGD1:XV:923227:925035:-1 // ensembl // 11 // --- /// YOR324C // cdna:known chromosome:SGD1:XV:923227:925035:-1 gene:YOR324C // ensembl // 11 // --- --- No cerevisiae_gene -1.58083020341102 -1.20439998599021 1.03811725151913 -1.28854393811117 1.06078067644069 Max fold change below threshold 4 1.58083020341102 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770402_at YDR530C.S1 Diadenosine 5',5''-P1,P4-tetraphosphate phosphorylase II (AP4A phosphorylase), involved in catabolism of bis(5'-nucleosidyl) tetraphosphates; has similarity to Apa1p 1.58004259710754 2365.69592285156 1532.04327392578 APA2 9117 // nucleotide metabolism // inferred from mutant phenotype /// 9117 // nucleotide metabolism // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4081 // bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity // inferred from direct assay /// 4081 // bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity // inferred from mutant phenotype /// 4081 // bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity // inferred from genetic interaction /// 8796 // bis(5'-nucleosyl)-tetraphosphatase activity // traceable author statement 1562.03295898438 2263.31323242188 2468.07861328125 1502.05358886719 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR530C /GEN=APA2 /DB_XREF=GI:6320739 /SEG=NC_001136:-1496779,1497756 /DEF=Diadenosine 5',5''-P1,P4-tetraphosphate phosphorylase II (AP4A phosphorylase), involved in catabolism of bis(5'-nucleosidyl) tetraphosphates; has similarity to Apa1p /NOTE=Apa2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity [goid GO:0004081] [evidence IDA,IGI,IMP] [pmid 2174863]; go_function: bis(5'-nucleosyl)-tetraphosphatase activity [goid GO:0008796] [evidence TAS] [pmid 7642617]; go_process: nucleotide metabolism [goid GO:0009117] [evidence IGI,IMP] [pmid 2174863] --- --- --- --- --- --- S0002938 // APA2 SGDID:S0002938, Chr IV from 1497758-1496781, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023802 // cdna:GeneFinder chromosome:SGD1:IV:1496781:1497758:-1 // ensembl // 11 // --- /// GENSCAN00000025512 // cdna:Genscan chromosome:SGD1:IV:1496781:1497758:-1 // ensembl // 11 // --- /// YDR530C // cdna:known chromosome:SGD1:IV:1496781:1497758:-1 gene:YDR530C // ensembl // 11 // --- --- No cerevisiae_gene 1.00611886021556 1.44895357002804 1.07848838254309 1.58004259710754 -1.03993157804871 Max fold change below threshold 4 1.58004259710754 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769682_at YOR104W.S1 Protein that induces appearance of [PIN+] prion when overproduced 1.5797052168961 391.185272216797 426.146743774414 PIN2 --- --- --- 407.181457519531 378.285552978516 404.084991455078 445.112030029297 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR104W /GEN=PIN2 /DB_XREF=GI:6324678 /SEG=NC_001147:+517642,518490 /DEF=[PSI+] induction /NOTE=Pin2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005630 // span:43-65 // numtm:1 S0005630 // PIN2 SGDID:S0005630, Chr XV from 517642-518490, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022594 // cdna:GeneFinder chromosome:SGD1:XV:517954:518490:1 // ensembl // 10 // --- /// YOR104W // cdna:known chromosome:SGD1:XV:517642:518490:1 gene:YOR104W // ensembl // 11 // --- YOR105W // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.5797052168961 -1.07638648717483 1.07224353836554 -1.00766290787812 1.09315397793611 Max fold change below threshold 4 1.5797052168961 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772362_at YJR075W.S1 Alpha-1,6-mannosyltransferase involved in cell wall mannan biosynthesis; subunit of a Golgi-localized complex that also contains Anp1p, Mnn9p, Mnn11p, and Mnn10p; identified as a suppressor of a cell lysis sensitive pkc1-371 allele 1.57945041685691 568.325134277344 893.258117675781 HOC1 32 // cell wall mannoprotein biosynthesis // traceable author statement /// 6080 // mannan metabolism // traceable author statement 136 // alpha-1,6-mannosyltransferase complex // inferred from direct assay /// 136 // alpha-1,6-mannosyltransferase complex // inferred from physical interaction 9 // alpha-1,6-mannosyltransferase activity // inferred from direct assay /// 16757 // transferase activity, transferring glycosyl groups // inferred from sequence similarity 883.803344726563 559.563842773438 577.08642578125 902.712890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR075W /GEN=HOC1 /DB_XREF=GI:6322535 /SEG=NC_001142:+573895,575085 /DEF=Alpha-1,6-mannosyltransferase involved in cell wall mannan biosynthesis; subunit of a Golgi-localized complex that also contains Anp1p, Mnn9p, Mnn11p, and Mnn10p; identified as a suppressor of a cell lysis sensitive pkc1-371 allele /NOTE=Hoc1p; go_component: mannosyltransferase complex [goid GO:0000136] [evidence IDA] [pmid 10037752]; go_component: mannosyltransferase complex [goid GO:0000136] [evidence IPI] [pmid 9430634]; go_function: alpha-1,6-mannosyltransferase activity [goid GO:0000009] [evidence IDA] [pmid 10037752]; go_function: transferase activity, transferring glycosyl groups [goid GO:0016757] [evidence ISS] [pmid 9653120]; go_process: N-glycan processing [goid GO:0006491] [evidence TAS] [pmid 10037752]; go_process: cell wall mannoprotein biosynthesis [goid GO:0000032] [evidence TAS] [pmid 10037752]; go_process: mannan metabolism [goid GO:0006080] [evidence TAS] [pmid 10037752] --- --- --- --- --- S0003836 // span:13-32 // numtm:1 S0003836 // HOC1 SGDID:S0003836, Chr X from 573895-575085, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024306 // cdna:GeneFinder chromosome:SGD1:X:573895:575085:1 // ensembl // 11 // --- /// GENSCAN00000024193 // cdna:Genscan chromosome:SGD1:X:574252:575085:1 // ensembl // 11 // --- /// YJR075W // cdna:known chromosome:SGD1:X:573895:575085:1 gene:YJR075W // ensembl // 11 // --- --- No cerevisiae_gene -1.2996250624335 -1.57945041685691 -1.1049572633398 -1.53149217386301 1.02139564871673 Max fold change below threshold 4 1.57945041685691 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774499_at YLR033W.S1 Remodels the structure of chromatin complex 58KDa subunit; Chromatin Remodeling Complex subunit 1.57914403741699 318.518463134766 264.345375061035 RSC58 6338 // chromatin remodeling // inferred from direct assay 16586 // RSC complex // inferred from direct assay --- 233.73030090332 293.663513183594 343.373413085938 294.96044921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR033W /GEN=RSC58 /DB_XREF=GI:6323061 /SEG=NC_001144:+208762,210270 /DEF=Remodels the structure of chromatin complex 58KDa subunit /NOTE=Rsc58p; go_component: RSC complex [goid GO:0016586] [evidence IDA] [pmid 12052880]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 12052880] --- --- --- --- --- --- S0004023 // RSC58 SGDID:S0004023, Chr XII from 208762-210270, Verified ORF // sgd // 11 // --- /// GENSCAN00000017846 // cdna:Genscan chromosome:SGD1:XII:208762:210270:1 // ensembl // 11 // --- /// GENEFINDER00000024858 // cdna:GeneFinder chromosome:SGD1:XII:209554:210270:1 // ensembl // 11 // --- /// YLR033W // cdna:known chromosome:SGD1:XII:208762:210270:1 gene:YLR033W // ensembl // 11 // --- --- No cerevisiae_gene 1.57914403741699 1.25642037873842 1.35480624470345 1.46910097560679 1.26196923581918 Max fold change below threshold 4 1.57914403741699 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780091_at YPL058C.S1 Plasma membrane weak-acid-inducible ATP-binding cassette (ABC) transporter, required for weak organic acid resistance, strongly induced by sorbate and benzoate, regulated by War1p, mutants exhibit sorbate hypersensitivity 1.57815662531236 745.920349121094 521.144790649414 PDR12 6810 // transport // traceable author statement /// 15849 // organic acid transport // inferred from direct assay /// 19541 // propionate metabolism // inferred from expression pattern 5886 // plasma membrane // inferred from direct assay 5342 // organic acid transporter activity // inferred from direct assay /// 8559 // xenobiotic-transporting ATPase activity // traceable author statement 477.134002685547 752.9921875 738.848510742188 565.155578613281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL058C /GEN=PDR12 /DB_XREF=GI:6325199 /SEG=NC_001148:-445837,450372 /DEF=similar to Pdr5p /NOTE=Pdr12p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 9687494]; go_function: organic acid transporter activity [goid GO:0005342] [evidence IDA] [pmid 10419965]; go_function: xenobiotic-transporting ATPase activity [goid GO:0008559] [evidence TAS] [pmid 11421285]; go_process: organic acid transport [goid GO:0015849] [evidence IDA] [pmid 10419965]; go_process: propionate metabolism [goid GO:0019541] [evidence IEP] [pmid 11179416]; go_process: transport [goid GO:0006810] [evidence TAS] [pmid 11421285] --- --- --- --- --- S0005979 // span:595-617,624-646,656-678,764-786,1177-1199,1211-1233,1248-1269,1290-1312,1322-1340,1353-1372,1447-1466 // numtm:11 S0005979 // PDR12 SGDID:S0005979, Chr XVI from 450374-445839, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017145 // cdna:Genscan chromosome:SGD1:XVI:445839:450374:-1 // ensembl // 11 // --- /// GENEFINDER00000021049 // cdna:GeneFinder chromosome:SGD1:XVI:445839:450374:-1 // ensembl // 11 // --- /// YPL058C // cdna:known chromosome:SGD1:XVI:445839:450374:-1 gene:YPL058C // ensembl // 11 // --- --- No cerevisiae_gene 1.16284831836207 1.57815662531236 -1.47696382702699 1.5485136389014 1.18447978017141 Max fold change below threshold 4 1.57815662531236 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774289_at YAL022C.S1 Nucleoside transporter with broad nucleoside selectivity; localized to intracellular membranes 1.57804462342011 258.795204162598 356.867721557617 FUN26 15858 // nucleoside transport // inferred from direct assay 5622 // intracellular // inferred from direct assay /// 16020 // membrane // inferred from direct assay 5337 // nucleoside transporter activity // inferred from direct assay 339.669891357422 215.247329711914 302.343078613281 374.065551757813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL022C /GEN=FUN26 /DB_XREF=GI:6319297 /SEG=NC_001133:-108880,110433 /DEF=Nucleoside transporter with broad nucleoside selectivity; localized to intracellular membranes /NOTE=Fun26p; go_component: intracellular [goid GO:0005622] [evidence IDA] [pmid 10827169]; go_component: membrane [goid GO:0016020] [evidence IDA] [pmid 10827169]; go_function: nucleoside transporter activity [goid GO:0005337] [evidence IDA] [pmid 10827169]; go_process: nucleoside transport [goid GO:0015858] [evidence IDA] [pmid 10827169] --- --- --- --- --- S0000020 // span:79-101,116-137,150-172,177-199,212-234,244-266,343-365,375-392,412-434,444-466,493-515 // numtm:11 S0000020 // FUN26 SGDID:S0000020, Chr I from 110431-108878, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018195 // cdna:GeneFinder chromosome:SGD1:I:108878:110431:-1 // ensembl // 11 // --- /// GENSCAN00000020360 // cdna:Genscan chromosome:SGD1:I:108878:110431:-1 // ensembl // 11 // --- /// YAL022C // cdna:known chromosome:SGD1:I:108878:110431:-1 gene:YAL022C // ensembl // 11 // --- --- No cerevisiae_gene 1.33980862874982 -1.57804462342011 1.07443310393257 -1.12345846617473 1.10126202314528 Max fold change below threshold 4 1.57804462342011 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775144_at YDR308C.S1 RNA polymerase II holoenzyme component 1.57752421339964 106.626361846924 134.241249084473 SRB7 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from direct assay 126.065841674805 90.1975173950195 123.055206298828 142.416656494141 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR308C /GEN=SRB7 /DB_XREF=GI:6320514 /SEG=NC_001136:-1078019,1078441 /DEF=Suppressor of RNA polymerase II, possible component of the holoenzyme /NOTE=Srb7p; go_component: mediator complex [goid GO:0000119] [evidence IDA] [pmid 9420330]; go_function: RNA polymerase II transcription mediator activity [goid GO:0016455] [evidence IDA] [pmid 9420330]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IDA] [pmid 9420330] --- --- --- --- --- --- S0002716 // SRB7 SGDID:S0002716, Chr IV from 1078443-1078021, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025337 // cdna:Genscan chromosome:SGD1:IV:1078021:1078401:-1 // ensembl // 10 // --- /// YDR308C // cdna:known chromosome:SGD1:IV:1078021:1078443:-1 gene:YDR308C // ensembl // 11 // --- --- No cerevisiae_gene 1.57752421339964 -1.39766420757126 1.40086428573936 -1.02446572937894 1.1297005961497 Max fold change below threshold 4 1.57752421339964 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771111_at SPAC105.03c.S1 --- 1.57746679261342 --- --- --- --- 5.10713291168213 6.0696496963501 4.45284986495972 4.9571681022644 0.398925989866257 0.171387001872063 0.0676269978284836 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC105.03c /DEF=involved in transcriptional regulation --- --- --- --- --- --- SPAC105.03c // |||involved in transcriptional regulation|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.57746679261342 1.18846519198008 1.06335616278481 -1.14693579764974 -1.03025211296531 Max fold change below threshold 4 1.57746679261342 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771154_at YIR023W.S1 Positive regulator of genes in multiple nitrogen degradation pathways; contains DNA binding domain but does not appear to bind the dodecanucleotide sequence present in the promoter region of many genes involved in allantoin catabolism 1.57713040792962 174.623970031738 270.10627746582 DAL81 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence similarity /// 19740 // nitrogen utilization // inferred from mutant phenotype 5634 // nucleus // inferred from curator 3704 // specific RNA polymerase II transcription factor activity // inferred from mutant phenotype /// 3704 // specific RNA polymerase II transcription factor activity // inferred from sequence similarity 255.606018066406 187.177627563477 162.0703125 284.606536865234 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR023W /GEN=DAL81 /DB_XREF=GI:6322214 /SEG=NC_001141:+399774,402686 /DEF=Positive regulator of genes in multiple nitrogen degradation pathways; contains DNA binding domain but does not appear to bind the dodecanucleotide sequence present in the promoter region of many genes involved in allantoin catabolism /NOTE=Dal81p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 7899074]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IMP,ISS] [pmid 7899074]; go_process: nitrogen utilization [goid GO:0019740] [evidence IMP] [pmid 7899074]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP,ISS] [pmid 7899074] --- --- --- --- --- --- S0001462 // DAL81 SGDID:S0001462, Chr IX from 399774-402686, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019100 // cdna:GeneFinder chromosome:SGD1:IX:400368:402686:1 // ensembl // 11 // --- /// GENSCAN00000016492 // cdna:Genscan chromosome:SGD1:IX:400437:402686:1 // ensembl // 11 // --- /// YIR023W // cdna:known chromosome:SGD1:IX:399774:402686:1 gene:YIR023W // ensembl // 11 // --- YIR023C-A // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene -1.35636966940536 -1.365579964837 -1.1478958732094 -1.57713040792962 1.1134578873307 Max fold change below threshold 4 1.57713040792962 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774485_at YJL066C.S1 Mitochondrial membrane protein of unknown function, contains no hydrophobic stretches 1.57696959930164 1188.69290161133 1298.72894287109 MPM1 --- 5624 // membrane fraction // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 1229.1708984375 998.386413574219 1378.99938964844 1368.28698730469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL066C /GEN=MPM1 /DB_XREF=GI:6322395 /SEG=NC_001142:-314030,314788 /DEF=mitochondrial membrane protein /NOTE=Mpm1p; go_component: membrane fraction [goid GO:0005624] [evidence IDA]; go_component: mitochondrion [goid GO:0005739] [evidence IDA]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003602 // MPM1 SGDID:S0003602, Chr X from 314788-314030, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024088 // cdna:Genscan chromosome:SGD1:X:314030:314788:-1 // ensembl // 11 // --- /// GENEFINDER00000024292 // cdna:GeneFinder chromosome:SGD1:X:314030:314788:-1 // ensembl // 11 // --- /// YJL066C // cdna:known chromosome:SGD1:X:314030:314788:-1 gene:YJL066C // ensembl // 11 // --- YJL067W // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene -1.57696959930164 -1.23115747743108 1.34841431954816 1.12189394607487 1.1131788012912 Max fold change below threshold 4 1.57696959930164 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774748_at YOL139C.S1 Cytoplasmic mRNA cap binding protein; the eIF4E-cap complex is responsible for mediating cap-dependent mRNA translation via interactions with the translation initiation factor eIF4G (Tif4631p or Tif4632p) 1.57645362390576 1696.22131347656 2511.74560546875 CDC33 74 // regulation of cell cycle // inferred from mutant phenotype /// 184 // mRNA catabolism, nonsense-mediated decay // inferred from direct assay /// 184 // mRNA catabolism, nonsense-mediated decay // inferred from physical interaction /// 6413 // translational initiation // inferred from sequence similarity /// 6413 // translational initiation // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5840 // ribosome // traceable author statement /// 16281 // eukaryotic translation initiation factor 4F complex // traceable author statement 3743 // translation initiation factor activity // inferred from sequence similarity /// 3743 // translation initiation factor activity // traceable author statement 2477.72998046875 1571.71130371094 1820.73132324219 2545.76123046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL139C /GEN=CDC33 /DB_XREF=GI:6324433 /SEG=NC_001147:-60382,61023 /DEF=Cytoplasmic mRNA cap binding protein; the eIF4E-cap complex is responsible for mediating cap-dependent mRNA translation via interactions with the translation initiation factor eIF4G (Tif4631p or Tif4632p) /NOTE=Cdc33p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 8119957]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8119957]; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 9841679]; go_function: translation initiation factor activity [goid GO:0003743] [evidence ISS] [pmid 3062383]; go_function: translation initiation factor activity [goid GO:0003743] [evidence TAS] [pmid 9841679]; go_process: regulation of cell cycle [goid GO:0000074] [evidence IMP] [pmid 2540596]; go_process: translational initiation [goid GO:0006413] [evidence ISS] [pmid 3062383]; go_process: translational initiation [goid GO:0006413] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0005499 // CDC33 SGDID:S0005499, Chr XV from 61023-60382, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017359 // cdna:Genscan chromosome:SGD1:XV:60382:61023:-1 // ensembl // 11 // --- /// GENEFINDER00000022841 // cdna:GeneFinder chromosome:SGD1:XV:60382:61023:-1 // ensembl // 11 // --- /// YOL139C // cdna:known chromosome:SGD1:XV:60382:61023:-1 gene:YOL139C // ensembl // 11 // --- --- No cerevisiae_gene 1.34765354108503 -1.57645362390576 1.04041588438889 -1.36084327700621 1.027457087954 Max fold change below threshold 4 1.57645362390576 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773899_at YBL063W.S1 Kinesin-related motor protein required for mitotic spindle assembly and chromosome segregation; functionally redundant with Cin8p 1.57610906711416 132.979595184326 218.179779052734 KIP1 92 // mitotic anaphase B // inferred from mutant phenotype /// 7020 // microtubule nucleation // inferred from physical interaction 5816 // spindle pole body // inferred from direct assay /// 5871 // kinesin complex // traceable author statement /// 5876 // spindle microtubule // traceable author statement 3777 // microtubule motor activity // traceable author statement /// 5200 // structural constituent of cytoskeleton // inferred from physical interaction 194.513626098633 142.545379638672 123.41381072998 241.845932006836 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL063W /GEN=KIP1 /DB_XREF=GI:6319408 /SEG=NC_001134:+101850,105185 /DEF=Mitotic spindle assembly /NOTE=Kip1p; go_component: kinesin complex [goid GO:0005871] [evidence TAS] [pmid 9153752]; go_component: spindle microtubule [goid GO:0005876] [evidence TAS] [pmid 9153752]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 9585415]; go_function: microtubule motor activity [goid GO:0003777] [evidence TAS] [pmid 9153752]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9585415]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752]; go_process: mitotic anaphase B [goid GO:0000092] [evidence IMP] [pmid 9813090] --- --- --- --- --- --- S0000159 // KIP1 SGDID:S0000159, Chr II from 101888-105223, Verified ORF // sgd // 11 // --- /// GENSCAN00000021089 // cdna:Genscan chromosome:SGD1:II:101888:105223:1 // ensembl // 11 // --- /// YBL063W // cdna:known chromosome:SGD1:II:101888:105223:1 gene:YBL063W // ensembl // 11 // --- --- No cerevisiae_gene -1.41423666092399 -1.36457334914461 1.13534829374367 -1.57610906711416 1.24333671042769 Max fold change below threshold 4 1.57610906711416 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777329_at YOL051W.S1 Component of the Mediator complex; interacts with RNA polymerase II and the general transcription factors to form the RNA polymerase II holoenzyme; affects transcription by acting as target of activators and repressors 1.57567755880231 2184.7392578125 2660.29309082031 GAL11 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from direct assay 2789.26318359375 2190.78759765625 2178.69091796875 2531.32299804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL051W /GEN=GAL11 /DB_XREF=GI:6324522 /SEG=NC_001147:+234938,238183 /DEF=Component of the Mediator complex; interacts with RNA polymerase II and the general transcription factors to form the RNA polymerase II holoenzyme; affects transcription by acting as target of activators and repressors /NOTE=Gal11p; go_component: mediator complex [goid GO:0000119] [evidence IDA] [pmid 9420330]; go_function: RNA polymerase II transcription mediator activity [goid GO:0016455] [evidence IDA] [pmid 9420330]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IDA] [pmid 9420330] --- --- --- --- --- --- S0005411 // GAL11 SGDID:S0005411, Chr XV from 234938-238183, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022637 // cdna:GeneFinder chromosome:SGD1:XV:234938:238183:1 // ensembl // 11 // --- /// GENSCAN00000017429 // cdna:Genscan chromosome:SGD1:XV:237128:238183:1 // ensembl // 11 // --- /// YOL051W // cdna:known chromosome:SGD1:XV:234938:238183:1 gene:YOL051W // ensembl // 11 // --- YOL050C // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene -1.57567755880231 -1.27317827916214 -1.07806073997355 -1.28024730841319 -1.10189935687619 Max fold change below threshold 4 1.57567755880231 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779322_at YDR208W.S1 Phosphatidylinositol-4-phosphate 5-kinase, involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation 1.57547458025444 2710.74645996094 2122.35583496094 MSS4 30036 // actin cytoskeleton organization and biogenesis // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from genetic interaction /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype /// 45011 // actin cable formation // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay 16308 // 1-phosphatidylinositol-4-phosphate 5-kinase activity // inferred from direct assay 2297.06982421875 3068.21240234375 2353.28051757813 1947.64184570313 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR208W /GEN=MSS4 /DB_XREF=GI:6320414 /SEG=NC_001136:+868217,870556 /DEF=Involved in actin cytoskeleton organization; multicopy suppressor of stt4 mutation /NOTE=Mss4p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 9624177]; go_function: 1-phosphatidylinositol-4-phosphate 5-kinase activity [goid GO:0016308] [evidence IDA] [pmid 9624177]; go_process: actin cable formation [goid GO:0045011] [evidence IMP] [pmid 9624178]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence IMP] [pmid 9624178] --- --- --- --- --- --- S0002616 // MSS4 SGDID:S0002616, Chr IV from 868219-870558, Verified ORF // sgd // 11 // --- /// GENSCAN00000025256 // cdna:Genscan chromosome:SGD1:IV:868219:870558:1 // ensembl // 11 // --- /// GENEFINDER00000023718 // cdna:GeneFinder chromosome:SGD1:IV:868945:870558:1 // ensembl // 11 // --- /// YDR208W // cdna:known chromosome:SGD1:IV:868219:870558:1 gene:YDR208W // ensembl // 11 // --- --- No cerevisiae_gene -1.57547458025444 1.33570706906451 -1.17868091386625 1.02447060719127 -1.17941079839013 Max fold change below threshold 4 1.57547458025444 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778567_at YDR420W.S1 Serine/threonine rich cell surface protein that contains an EF hand motif; involved in the regulation of cell wall beta-1,3 glucan synthesis and bud site selection; overexpression confers resistance to Hansenula mrakii killer toxin, HM-1 1.57514564920113 442.243865966797 479.7265625 HKR1 282 // bud site selection // inferred from mutant phenotype /// 6075 // beta-1,3 glucan biosynthesis // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay /// 5886 // plasma membrane // inferred from sequence similarity --- 456.061676025391 351.569396972656 532.918334960938 503.391448974609 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR420W /GEN=HKR1 /DB_XREF=GI:6320628 /SEG=NC_001136:+1306255,1311663 /DEF=Serine/threonine rich cell surface protein that contains an EF hand motif; involved in the regulation of cell wall beta-1,3 glucan synthesis and bud site selection; overexpression confers resistance to Hansenula mrakii killer toxin, HM-1 /NOTE=Hkr1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA,ISS] [pmid 8550469]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: beta-1,3 glucan biosynthesis [goid GO:0006075] [evidence IMP] [pmid 8550469]; go_process: bud site selection [goid GO:0000282] [evidence IMP] [pmid 8550469]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 8550469] --- --- --- --- --- S0002828 // span:1486-1508 // numtm:1 S0002828 // HKR1 SGDID:S0002828, Chr IV from 1306257-1311665, Verified ORF // sgd // 11 // --- /// GENSCAN00000025432 // cdna:Genscan chromosome:SGD1:IV:1306257:1311665:1 // ensembl // 11 // --- /// YDR420W // cdna:known chromosome:SGD1:IV:1306257:1311665:1 gene:YDR420W // ensembl // 11 // --- --- No cerevisiae_gene -1.37164188543166 -1.2972166518261 -1.57514564920113 1.16852251126505 1.10377932511607 Max fold change below threshold 4 1.57514564920113 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776085_at YKL157W.S1 Zinc-dependent metallopeptidase yscII, may have a role in obtaining leucine from dipeptide substrates; sequence coordinates have changed since RT-PCR analysis showed that the adjacent ORF YKL158W comprises the 5' exon of APE2/YKL157W 1.57451855544705 5449.4345703125 4318.9248046875 APE2 6518 // peptide metabolism // inferred from mutant phenotype 5737 // cytoplasm // non-traceable author statement /// 5739 // mitochondrion // inferred from direct assay /// 30287 // periplasmic space (sensu Fungi) // non-traceable author statement 4178 // leucyl aminopeptidase activity // inferred from mutant phenotype 4540.0419921875 5766.0224609375 5132.8466796875 4097.8076171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL157W /GEN=APE2 /DB_XREF=GI:9755335 /SEG=NC_001143:+154996,158186 /DEF=Zinc-dependent metallopeptidase yscII, may have a role in obtaining leucine from dipeptide substrates; sequence coordinates have changed since RT-PCR analysis showed that the adjacent ORF YKL158W comprises the 5' exon of APE2/YKL157W /NOTE=Ape2p; go_component: cytoplasm [goid GO:0005737] [evidence NAS] [pmid 1765107]; go_component: periplasmic space (sensu Fungi) [goid GO:0030287] [evidence NAS] [pmid 1765107]; go_function: leucyl aminopeptidase activity [goid GO:0004178] [evidence IMP] [pmid 6352682]; go_process: peptide metabolism [goid GO:0006518] [evidence IMP] [pmid 3286257] --- --- --- --- --- --- S0001640 // APE2 SGDID:S0001640, Chr XI from 154996-155276,155660-158186, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000018301 // cdna:Genscan chromosome:SGD1:XI:155652:158186:1 // ensembl // 11 // --- /// GENEFINDER00000023161 // cdna:GeneFinder chromosome:SGD1:XI:155652:158186:1 // ensembl // 11 // --- /// YKL157W // cdna:known chromosome:SGD1:XI:154996:158186:1 gene:YKL157W // ensembl // 11 // --- --- No cerevisiae_gene -1.57451855544705 1.27003725314869 -1.06359098650117 1.13057251199881 -1.10791975034287 Max fold change below threshold 4 1.57451855544705 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778382_at SPBC25H2.02.S1 --- 1.57423316816586 --- --- --- --- 6.4857234954834 5.4077262878418 10.2100410461426 4.50628137588501 0.303710997104645 0.665526986122131 0.24609400331974 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25H2.02 /GEN=ths1 /DEF=threonine-tRNA ligase (predicted) --- --- --- --- --- --- SPBC25H2.02 // |ths1||threonine-tRNA ligase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.20621028273012 -1.19934389247201 -1.25535395983564 1.57423316816586 -1.43926287652414 Max fold change below threshold 4 1.57423316816586 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777856_at YLL025W.S1 Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth /// Hypothetical protein 1.57416157832662 795.187347412109 943.216918945313 DAN2 --- 9277 // cell wall (sensu Fungi) // inferred from sequence similarity --- 951.900329589844 723.621948242188 866.752746582031 934.533508300781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL025W /GEN=HSP104 /DB_XREF=GI:6323003 /SEG=NC_001144:+94746,95120 /DEF=Hypothetical ORF /NOTE=Yll025wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004027 // span:7-29 // numtm:1 S0003948 // YLL025W SGDID:S0003948, Chr XII from 94746-95120, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017702 // cdna:Genscan chromosome:SGD1:XII:94746:95120:1 // ensembl // 11 // --- /// GENEFINDER00000024703 // cdna:GeneFinder chromosome:SGD1:XII:94746:95120:1 // ensembl // 11 // --- /// YLL025W // cdna:known chromosome:SGD1:XII:94746:95120:1 gene:YLL025W // ensembl // 11 // --- --- No cerevisiae_gene -1.57416157832662 -1.31546635905971 1.17065260915745 -1.09823745392626 -1.01858341208186 Max fold change below threshold 4 1.57416157832662 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773425_at YER014W.S1 Protoporphyrinogen oxidase, a mitochondrial enzyme that catalyzes the seventh step in the heme biosynthetic pathway, converting protoporphyrinogen IX to protoporphyrin IX 1.57414800190844 729.68994140625 827.250061035156 HEM14 6783 // heme biosynthesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from sequence similarity /// 5739 // mitochondrion // inferred from direct assay 4729 // protoporphyrinogen oxidase activity // inferred from sequence similarity /// 4729 // protoporphyrinogen oxidase activity // inferred from mutant phenotype 814.767822265625 662.035583496094 797.344299316406 839.732299804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER014W /GEN=HEM14 /DB_XREF=GI:6320851 /SEG=NC_001137:+182599,184218 /DEF=Protoporphyrinogen oxidase, a mitochondrial enzyme that catalyzes the seventh step in the heme biosynthetic pathway, converting protoporphyrinogen IX to protoporphyrin IX /NOTE=Hem14p; go_component: mitochondrion [goid GO:0005739] [evidence ISS] [pmid 8948097]; go_function: protoporphyrinogen oxidase activity [goid GO:0004729] [evidence IMP,ISS] [pmid 8948097]; go_process: heme biosynthesis [goid GO:0006783] [evidence IMP] [pmid 8948097] --- --- --- --- scop // a.4.2.Methylated DNA-protein cysteine methyltransferase, C-termi // All alpha proteins; DNA/RNA-binding 3-helical bundle; Methylated DNA-protein cysteine methyltransferase, C-terminal domain; Methylated DNA-protein cysteine methyltransferase, C-terminal domain // 5.80000019073486 --- S0000816 // HEM14 SGDID:S0000816, Chr V from 182599-184218, Verified ORF // sgd // 11 // --- /// GENSCAN00000016816 // cdna:Genscan chromosome:SGD1:V:182776:184218:1 // ensembl // 11 // --- /// GENEFINDER00000019734 // cdna:GeneFinder chromosome:SGD1:V:183133:184218:1 // ensembl // 11 // --- /// YER014W // cdna:known chromosome:SGD1:V:182599:184218:1 gene:YER014W // ensembl // 11 // --- S0007590 // sgd // 8 // Negative Strand Matching Probes /// YER014C-A // ensembl // 8 // Negative Strand Matching Probes No cerevisiae_gene -1.57414800190844 -1.23070095109236 -1.1316685986785 -1.02185194396468 1.03063998952443 Max fold change below threshold 4 1.57414800190844 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771100_at YGL254W.S1 Transcription factor involved in sulfite metabolism, sole identified regulatory target is SSU1, overexpression suppresses sulfite-sensitivity of many unrelated mutants due to hyperactivation of SSU1, contains five zinc fingers 1.57379866803865 92.7204895019531 118.731430053711 FZF1 316 // sulfite transport // traceable author statement /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from curator 3700 // transcription factor activity // inferred from direct assay 115.498970031738 73.3886566162109 112.052322387695 121.963890075684 0.00415039015933871 0.0239257998764515 0.0107421996071935 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL254W /GEN=FZF1 /DB_XREF=GI:6321183 /SEG=NC_001139:+22304,23203 /DEF=Transcription factor involved in sulfite resistance; contains five zinc-fingers; activates SSU1 transcription /NOTE=Fzf1p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 10234785]; go_function: transcription factor activity [goid GO:0003700] [evidence IDA] [pmid 10234785]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IDA] [pmid 10234785]; go_process: sulfite transport [goid GO:0000316] [evidence TAS] [pmid 10234785] --- --- --- --- --- --- S0003223 // FZF1 SGDID:S0003223, Chr VII from 22304-23203, Verified ORF // sgd // 11 // --- /// GENSCAN00000019160 // cdna:Genscan chromosome:SGD1:VII:22304:23203:1 // ensembl // 11 // --- /// GENEFINDER00000021520 // cdna:GeneFinder chromosome:SGD1:VII:22304:23203:1 // ensembl // 11 // --- /// YGL254W // cdna:known chromosome:SGD1:VII:22304:23203:1 gene:YGL254W // ensembl // 11 // --- --- No cerevisiae_gene -1.18219602908393 -1.57379866803865 1.46803014080289 -1.03075927004991 1.05597383285902 Max fold change below threshold 4 1.57379866803865 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1770836_at YLR433C.S1 Calcineurin A; one isoform (the other is CMP2) of the catalytic subunit of calcineurin, a Ca++/calmodulin-regulated protein phosphatase which regulates Crz1p (a stress-response transcription factor), the other calcineurin subunit is CNB1 1.57373832593549 173.591911315918 222.747978210449 CNA1 754 // adaptation to pheromone during conjugation with cellular fusion // inferred from mutant phenotype /// 6873 // cell ion homeostasis // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from genetic interaction 5737 // cytoplasm // traceable author statement /// 5955 // calcineurin complex // inferred from sequence similarity /// 5955 // calcineurin complex // inferred from physical interaction 4723 // calcium-dependent protein serine/threonine phosphatase activity // inferred from sequence similarity 195.988220214844 132.733428955078 214.450393676758 249.507736206055 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR433C /GEN=CNA1 /DB_XREF=GI:6323465 /SEG=NC_001144:-1004343,1006004 /DEF=calmodulin binding protein homologous to mammalian calcineurin /NOTE=Cna1p; go_component: calcineurin complex [goid GO:0005955] [evidence IPI] [pmid 10887154]; go_component: calcineurin complex [goid GO:0005955] [evidence ISS] [pmid 1651503]; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 9123967]; go_function: calcium-dependent protein serine/threonine phosphatase activity [goid GO:0004723] [evidence ISS] [pmid 1651503]; go_process: adaptation to pheromone during conjugation with cellular fusion [goid GO:0000754] [evidence IMP] [pmid 1651503]; go_process: cell ion homeostasis [goid GO:0006873] [evidence IMP] [pmid 8798496]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IGI,IMP] [pmid 7530227] --- --- --- --- --- --- S0004425 // CNA1 SGDID:S0004425, Chr XII from 1006004-1004343, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018149 // cdna:Genscan chromosome:SGD1:XII:1004343:1006004:-1 // ensembl // 11 // --- /// GENEFINDER00000024884 // cdna:GeneFinder chromosome:SGD1:XII:1004343:1006004:-1 // ensembl // 11 // --- /// YLR433C // cdna:known chromosome:SGD1:XII:1004343:1006004:-1 gene:YLR433C // ensembl // 11 // --- --- No cerevisiae_gene 1.38138023108178 -1.47655509058817 1.57373832593549 1.09420042409526 1.27307516713271 Max fold change below threshold 4 1.57373832593549 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772171_at YLR152C.S1 Hypothetical protein 1.57372680195788 2251.64874267578 2533.12756347656 --- --- --- --- 2816.40234375 2492.58422851563 2010.71325683594 2249.85278320313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR152C /GEN=PCD1 /DB_XREF=GI:6323181 /SEG=NC_001144:-442959,444689 /DEF=Hypothetical ORF /NOTE=Ylr152cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004142 // span:7-29,74-96,103-125,140-162,401-423,438-460,473-495,515-534,547-569 // numtm:9 S0004142 // YLR152C SGDID:S0004142, Chr XII from 444689-442959, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017937 // cdna:Genscan chromosome:SGD1:XII:442959:444311:-1 // ensembl // 11 // --- /// GENEFINDER00000024800 // cdna:GeneFinder chromosome:SGD1:XII:442959:444311:-1 // ensembl // 11 // --- /// YLR152C // cdna:known chromosome:SGD1:XII:442959:444689:-1 gene:YLR152C // ensembl // 11 // --- --- No cerevisiae_gene -1.57372680195788 -1.12991260697626 1.04047500412622 -1.40069815234714 -1.25181628094807 Max fold change below threshold 4 1.57372680195788 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779853_at YHR071W.S1 Cyclin, interacts with Pho85p cyclin-dependent kinase (Cdk), induced by Gcn4p at level of transcription, specifically required for Gcn4p degradation, may be sensor of cellular protein biosynthetic capacity 1.57328076399165 2195.27215576172 1721.6484375 PCL5 7049 // cell cycle // traceable author statement 307 // cyclin-dependent protein kinase holoenzyme complex // traceable author statement 16538 // cyclin-dependent protein kinase regulator activity // traceable author statement 1643.35278320313 1805.08898925781 2585.45532226563 1799.94409179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR071W /GEN=PCL5 /DB_XREF=GI:6321862 /SEG=NC_001140:+237005,237694 /DEF=PHO85 cyclin /NOTE=Pcl5p; go_component: cyclin-dependent protein kinase holoenzyme complex [goid GO:0000307] [evidence TAS] [pmid 11602261]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS] [pmid 11602261]; go_process: cell cycle [goid GO:0007049] [evidence TAS] [pmid 11602261] --- --- --- --- --- --- S0001113 // PCL5 SGDID:S0001113, Chr VIII from 237005-237694, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020276 // cdna:GeneFinder chromosome:SGD1:VIII:234939:237694:1 // ensembl // 11 // --- /// GENSCAN00000016615 // cdna:Genscan chromosome:SGD1:VIII:237005:237694:1 // ensembl // 11 // --- /// YHR071W // cdna:known chromosome:SGD1:VIII:237005:237694:1 gene:YHR071W // ensembl // 11 // --- --- No cerevisiae_gene 1.56888687900311 1.09841843316165 -1.20131868598638 1.57328076399165 1.0952877009698 Max fold change below threshold 4 1.57328076399165 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774101_at YNL139C.S1 Subunit of the THO complex, which is required for efficient transcription elongation and involved in transcriptional elongation-associated recombination; required for LacZ RNA expression from certain plasmids 1.57324731531198 331.296859741211 437.075225830078 RLR1 6310 // DNA recombination // inferred from mutant phenotype /// 6368 // RNA elongation from RNA polymerase II promoter // inferred from mutant phenotype /// 6406 // mRNA-nucleus export // inferred from mutant phenotype 347 // THO complex // inferred from mutant phenotype /// 347 // THO complex // inferred from physical interaction /// 5634 // nucleus // inferred from curator 3676 // nucleic acid binding // inferred from direct assay /// 3677 // DNA binding // inferred from physical interaction 414.897888183594 292.069671630859 370.524047851563 459.252563476563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL139C /GEN=RLR1 /DB_XREF=GI:6324190 /SEG=NC_001146:-360924,365717 /DEF=Required for LacZ RNA expression from certain plasmids; suppressor of the Transcriptional (T) defect of Hpr1 (H) by Overexpression (O); plays a role in transcription elongation by RNA polymerase II /NOTE=Rlr1p; go_component: THO complex [goid GO:0000347] [evidence IMP,IPI] [pmid 11060033]; go_function: nucleic acid binding [goid GO:0003676] [evidence IDA] [pmid 12093753]; go_process: DNA recombination [goid GO:0006310] [evidence IMP] [pmid 11060033]; go_process: RNA elongation from Pol II promoter [goid GO:0006368] [evidence IMP] [pmid 12093753]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 11979277] --- --- --- --- --- --- S0005083 // RLR1 SGDID:S0005083, Chr XIV from 365717-360924, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019923 // cdna:Genscan chromosome:SGD1:XIV:360924:365717:-1 // ensembl // 11 // --- /// GENEFINDER00000020509 // cdna:GeneFinder chromosome:SGD1:XIV:360924:363485:-1 // ensembl // 11 // --- /// YNL140C // cdna:known chromosome:SGD1:XIV:360917:361486:-1 gene:YNL140C // ensembl // 11 // --- /// YNL139C // cdna:known chromosome:SGD1:XIV:360924:365717:-1 gene:YNL139C // ensembl // 11 // --- --- No cerevisiae_gene -1.57324731531198 -1.42054423476045 1.15576026080636 -1.11975967710956 1.10690503990549 Max fold change below threshold 4 1.57324731531198 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774222_at YKR074W.S1 Hypothetical protein 1.57309175350563 1808.00317382813 1287.96276855469 --- --- 5737 // cytoplasm // inferred from direct assay --- 1306.8408203125 2055.78051757813 1560.22583007813 1269.08471679688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR074W /GEN=SIS2 /DB_XREF=GI:6322927 /SEG=NC_001143:+578851,579318 /DEF=Hypothetical ORF /NOTE=Ykr074wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001782 // YKR074W SGDID:S0001782, Chr XI from 578851-579318, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023136 // cdna:GeneFinder chromosome:SGD1:XI:578875:579318:1 // ensembl // 11 // --- /// YKR074W // cdna:known chromosome:SGD1:XI:578851:579318:1 gene:YKR074W // ensembl // 11 // --- --- No cerevisiae_gene -1.05716308360332 1.57309175350563 1.33955587895726 1.19389125731857 -1.029750656529 Max fold change below threshold 4 1.57309175350563 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769821_at SPCC962.03c.S1 --- 1.57305061768065 --- --- --- --- 0.399753361940384 0.546579539775848 0.534263253211975 0.277766674757004 0.985840022563934 0.953857004642487 0.943848013877869 0.976073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC962.03c /GEN=cut15 /DEF=karyopherin --- --- --- --- --- --- SPCC962.03c // |cut15||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.57305061768065 1.36729191500173 -1.48155764888064 1.33648220147214 -1.43916962785437 Max fold change below threshold 0 1.57305061768065 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779446_at YIL102C.S1 Hypothetical protein 1.57288320416328 10.303328037262 10.5689644813538 --- --- --- --- 8.21565818786621 12.3439970016479 8.26265907287598 12.9222707748413 0.018554700538516 0.0676269978284836 0.00585938012227416 0.018554700538516 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL102C /GEN=SHQ1 /DB_XREF=GI:6322089 /SEG=NC_001141:-174579,174884 /DEF=Hypothetical ORF /NOTE=Yil102cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001364 // YIL102C SGDID:S0001364, Chr IX from 174884-174579, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YIL102C // cdna:known chromosome:SGD1:IX:174579:174884:-1 gene:YIL102C // ensembl // 11 // --- --- No cerevisiae_gene 1.21655912620482 1.50249641834892 1.33940215505003 1.00572089100289 1.57288320416328 Max fold change below threshold 4 1.57288320416328 Max fold change below threshold PPAPPP No 4 0 PAPP 1 3 0 No No 2 < x = 3
1775750_at YNL253W.S1 transcription export complex component 1.57287404809965 305.455307006836 503.971817016602 TEX1 6406 // mRNA-nucleus export // inferred from curator 346 // transcription export complex // inferred from physical interaction --- 466.841766357422 296.80810546875 314.102508544922 541.101867675781 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL253W /GEN=TEX1 /DB_XREF=GI:6324076 /SEG=NC_001146:+170017,171285 /DEF=transcription export complex component /NOTE=Tex1p; go_component: transcription export complex [goid GO:0000346] [evidence IPI] [pmid 11979277]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IC] [pmid 11979277] --- --- --- --- --- --- S0005197 // TEX1 SGDID:S0005197, Chr XIV from 170017-171285, Verified ORF // sgd // 11 // --- /// YNL253W // cdna:known chromosome:SGD1:XIV:170017:171285:1 gene:YNL253W // ensembl // 11 // --- --- No cerevisiae_gene 1.09397939044957 -1.57287404809965 1.08862144598934 -1.48627200884216 1.15906910364465 Max fold change below threshold 4 1.57287404809965 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771713_at YBR257W.S1 Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends; binds to the RPR1 RNA subunit in Rnase P 1.57286705247583 213.508544921875 237.93953704834 POP4 6364 // rRNA processing // traceable author statement /// 8033 // tRNA processing // traceable author statement 172 // ribonuclease MRP complex // inferred from direct assay /// 5655 // nucleolar ribonuclease P complex // inferred from direct assay 171 // ribonuclease MRP activity // inferred from direct assay /// 4526 // ribonuclease P activity // inferred from direct assay 222.883239746094 212.51252746582 214.50456237793 252.995834350586 0.000244141003349796 0.00415039015933871 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR257W /GEN=POP4 /DB_XREF=GI:6319734 /SEG=NC_001134:+728842,729681 /DEF=Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends; binds to the RPR1 RNA subunit in Rnase P /NOTE=Pop4p; go_component: nucleolar ribonuclease P complex [goid GO:0005655] [evidence IDA] [pmid 9620854]; go_component: ribonuclease MRP complex [goid GO:0000172] [evidence IDA] [pmid 9620854]; go_function: ribonuclease MRP activity [goid GO:0000171] [evidence IDA] [pmid 9620854]; go_function: ribonuclease P activity [goid GO:0004526] [evidence IDA] [pmid 9620854]; go_process: rRNA processing [goid GO:0006364] [evidence TAS] [pmid 9620854]; go_process: tRNA processing [goid GO:0008033] [evidence TAS] [pmid 9620854] --- --- --- --- --- --- S0000461 // POP4 SGDID:S0000461, Chr II from 728880-729719, Verified ORF // sgd // 11 // --- /// YBR257W // cdna:known chromosome:SGD1:II:728880:729719:1 gene:YBR257W // ensembl // 11 // --- --- No cerevisiae_gene 1.57286705247583 -1.04880047498349 1.12106668119864 -1.03906060213956 1.13510479585094 Max fold change below threshold 4 1.57286705247583 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770962_at YAL038W.S1 Pyruvate kinase, functions as a homotetramer in glycolysis to convert phosphoenolpyruvate to pyruvate, the input for aerobic (TCA cycle) or anaerobic (glucose fermentation) respiration 1.57245633888582 7897.8837890625 7912.13647460938 CDC19 6090 // pyruvate metabolism // inferred from mutant phenotype /// 6096 // glycolysis // inferred from mutant phenotype 5829 // cytosol // traceable author statement 4743 // pyruvate kinase activity // inferred from mutant phenotype /// 4743 // pyruvate kinase activity // inferred from direct assay 9350.806640625 9849.1435546875 5946.6240234375 6473.46630859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL038W /GEN=CDC19 /DB_XREF=GI:6319279 /SEG=NC_001133:+71789,73291 /DEF=Pyruvate kinase, functions as a homotetramer in glycolysis to convert phosphoenolpyruvate to pyruvate, the input for aerobic (TCA cycle) or anaerobic (glucose fermentation) respiration /NOTE=Cdc19p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: pyruvate kinase activity [goid GO:0004743] [evidence IDA] [pmid 12063246]; go_function: pyruvate kinase activity [goid GO:0004743] [evidence IMP] [pmid 323230]; go_process: glycolysis [goid GO:0006096] [evidence TAS]; go_process: pyruvate metabolism [goid GO:0006090] [evidence TAS] --- --- --- --- --- --- S0000036 // CDC19 SGDID:S0000036, Chr I from 71787-73289, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018189 // cdna:GeneFinder chromosome:SGD1:I:71787:73289:1 // ensembl // 11 // --- /// GENSCAN00000020344 // cdna:Genscan chromosome:SGD1:I:71787:73289:1 // ensembl // 11 // --- /// YAL038W // cdna:known chromosome:SGD1:I:71787:73289:1 gene:YAL038W // ensembl // 11 // --- YAL037C-B // ensembl // 11 // Negative Strand Matching Probes No cerevisiae_gene -1.34598297874255 1.05329346795574 -1.37181074959916 -1.57245633888582 -1.44448216687426 Max fold change below threshold 4 1.57245633888582 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770684_at YLR026C.S1 cis-Golgi t-SNARE syntaxin required for vesicular transport between the ER and the Golgi complex, binds at least 9 SNARE proteins 1.57184122917868 169.370491027832 245.892623901367 SED5 6888 // ER to Golgi transport // traceable author statement /// 6890 // retrograde transport, Golgi to ER // traceable author statement /// 6891 // intra-Golgi transport // traceable author statement /// 6906 // vesicle fusion // traceable author statement 5801 // Golgi cis-face // inferred from direct assay 5486 // t-SNARE activity // traceable author statement 234.662445068359 189.44953918457 149.291442871094 257.122802734375 0.000732421991415322 0.00292969006113708 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR026C /GEN=SED5 /DB_XREF=GI:6323054 /SEG=NC_001144:-195451,196473 /DEF=Sed5p is a t-SNARE (soluble NSF attachment protein receptor) required in ER to Golgi transport /NOTE=Sed5p; go_component: Golgi cis-face [goid GO:0005801] [evidence IDA] [pmid 7929581]; go_function: t-SNARE activity [goid GO:0005486] [evidence TAS] [pmid 10047442]; go_process: ER to Golgi transport [goid GO:0006888] [evidence TAS] [pmid 10047442]; go_process: intra-Golgi transport [goid GO:0006891] [evidence TAS] [pmid 10047442]; go_process: retrograde transport, Golgi to ER [goid GO:0006890] [evidence TAS] [pmid 10047442]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 10047442] --- --- --- --- --- S0004016 // span:320-339 // numtm:1 S0004016 // SED5 SGDID:S0004016, Chr XII from 196473-195451, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024571 // cdna:GeneFinder chromosome:SGD1:XII:195370:195969:-1 // ensembl // 11 // --- /// YLR026C // cdna:known chromosome:SGD1:XII:195451:196473:-1 gene:YLR026C // ensembl // 11 // --- --- No cerevisiae_gene 1.17860387111172 -1.23865408212865 -1.06582781020012 -1.57184122917868 1.09571347328062 Max fold change below threshold 4 1.57184122917868 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770449_s_at YBL072C.S1 Protein component of the small (40S) ribosomal subunit; identical to Rps8Bp and has similarity to rat S8 ribosomal protein /// Protein component of the small (40S) ribosomal subunit; identical to Rps8Ap and has similarity to rat S8 ribosomal protein 1.57092802232784 6401.94653320313 7768.93432617188 RPS8B /// RPS8A 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 8980.45703125 7087.23583984375 5716.6572265625 6557.41162109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL072C /GEN=RPS8A /DB_XREF=GI:6319399 /SEG=NC_001134:-88521,89123 /DEF=Protein component of the small (40S) ribosomal subunit; identical to Rps8Ap and has similarity to rat S8 ribosomal protein /NOTE=Rps8ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0000168 // RPS8A SGDID:S0000168, Chr II from 89123-88521, reverse complement, Verified ORF // sgd // 11 // --- /// S0000904 // RPS8B SGDID:S0000904, Chr V from 363096-363698, Verified ORF // sgd // 11 // --- /// GENSCAN00000021083 // cdna:Genscan chromosome:SGD1:II:88521:89123:-1 // ensembl // 11 // --- /// GENEFINDER00000022250 // cdna:GeneFinder chromosome:SGD1:II:88521:89123:-1 // ensembl // 11 // --- /// GENSCAN00000016887 // cdna:Genscan chromosome:SGD1:V:363096:363698:1 // ensembl // 11 // --- /// GENEFINDER00000019593 // cdna:GeneFinder chromosome:SGD1:V:363096:363698:1 // ensembl // 11 // --- /// YBL072C // cdna:known chromosome:SGD1:II:88521:89123:-1 gene:YBL072C // ensembl // 11 // --- /// YER102W // cdna:known chromosome:SGD1:V:363096:363698:1 gene:YER102W // ensembl // 11 // --- --- No cerevisiae_gene -1.30484327209884 -1.26713111207091 -1.44197829142441 -1.57092802232784 -1.36951247689894 Max fold change below threshold 4 1.57092802232784 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777312_at YHR025W.S1 Homoserine kinase, conserved protein required for threonine biosynthesis; expression is regulated by the GCN4-mediated general amino acid control pathway 1.57072992106701 869.175903320313 862.842437744141 THR1 6549 // isoleucine metabolism // traceable author statement /// 6555 // methionine metabolism // traceable author statement /// 6566 // threonine metabolism // traceable author statement /// 9092 // homoserine metabolism // inferred from direct assay --- 4413 // homoserine kinase activity // inferred from sequence similarity /// 4413 // homoserine kinase activity // inferred from direct assay 807.732116699219 615.256591796875 1123.09521484375 917.952758789063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR025W /GEN=THR1 /DB_XREF=GI:6321814 /SEG=NC_001140:+159430,160503 /DEF=homoserine kinase /NOTE=Thr1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: homoserine kinase activity [goid GO:0004413] [evidence IDA] [pmid 2165904]; go_function: homoserine kinase activity [goid GO:0004413] [evidence ISS] [pmid 8973190]; go_process: homoserine metabolism [goid GO:0009092] [evidence IDA] [pmid 2165904]; go_process: isoleucine metabolism [goid GO:0006549] [evidence TAS] [pmid 8973190]; go_process: methionine metabolism [goid GO:0006555] [evidence TAS] [pmid 8973190]; go_process: threonine metabolism [goid GO:0006566] [evidence TAS] [pmid 8973190] --- --- --- --- --- --- S0001067 // THR1 SGDID:S0001067, Chr VIII from 159430-160503, Verified ORF // sgd // 11 // --- /// GENSCAN00000016573 // cdna:Genscan chromosome:SGD1:VIII:159430:160503:1 // ensembl // 11 // --- /// GENEFINDER00000020145 // cdna:GeneFinder chromosome:SGD1:VIII:159430:160503:1 // ensembl // 11 // --- /// YHR025W // cdna:known chromosome:SGD1:VIII:159430:160503:1 gene:YHR025W // ensembl // 11 // --- --- No cerevisiae_gene 1.57072992106701 -1.31283781022193 -1.22861217400734 1.39043030681169 1.13645692651204 Max fold change below threshold 4 1.57072992106701 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773995_at YIL061C.S1 U1snRNP 70K protein homolog 1.57042260344361 156.379623413086 215.744972229004 SNP1 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 243 // commitment complex // inferred from physical interaction /// 5685 // snRNP U1 // inferred from direct assay 3729 // mRNA binding // inferred from physical interaction 215.755569458008 152.08708190918 160.672164916992 215.734375 0.018554700538516 0.014160200022161 0.00585938012227416 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL061C /GEN=SNP1 /DB_XREF=GI:6322128 /SEG=NC_001141:-244654,245556 /DEF=U1snRNP 70K protein homolog /NOTE=Snp1p; go_component: commitment complex [goid GO:0000243] [evidence IPI] [pmid 10072386]; go_component: snRNP U1 [goid GO:0005685] [evidence IDA] [pmid 11804584]; go_function: mRNA binding [goid GO:0003729] [evidence IPI] [pmid 10072386]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10072386] --- --- --- --- --- --- S0001323 // SNP1 SGDID:S0001323, Chr IX from 245556-244654, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016432 // cdna:Genscan chromosome:SGD1:IX:244654:245556:-1 // ensembl // 11 // --- /// GENEFINDER00000019148 // cdna:GeneFinder chromosome:SGD1:IX:244654:245556:-1 // ensembl // 11 // --- /// YIL061C // cdna:known chromosome:SGD1:IX:244654:245556:-1 gene:YIL061C // ensembl // 11 // --- --- No cerevisiae_gene 1.57042260344361 -1.41863179140256 1.03480802392856 -1.34283103466909 -1.00009824330503 Max fold change below threshold 4 1.57042260344361 Max fold change below threshold PPPPPP No 3 0 PPPP 0 4 0 No No 3 < x
1773675_at YER042W.S1 Peptide methionine sulfoxide reductase, reverses the oxidation of methionine residues; involved in oxidative damage repair, providing resistance to oxidative stress and regulation of lifespan 1.57039434793205 836.058715820313 1037.54223632813 MXR1 6979 // response to oxidative stress // inferred from mutant phenotype /// 6979 // response to oxidative stress // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8113 // protein-methionine-S-oxide reductase activity // inferred from sequence similarity 959.186401367188 835.439514160156 836.677917480469 1115.89807128906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER042W /GEN=MXR1 /DB_XREF=GI:6320881 /SEG=NC_001137:+234936,235490 /DEF=peptide Methionine sulfoXide Reductase 1 /NOTE=Mxr1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: protein-methionine-S-oxide reductase activity [goid GO:0008113] [evidence ISS] [pmid 9275166]; go_process: response to oxidative stress [goid GO:0006979] [evidence IGI,IMP] [pmid 11929995] --- --- --- --- --- --- S0000844 // MXR1 SGDID:S0000844, Chr V from 234936-235490, Verified ORF // sgd // 11 // --- /// GENSCAN00000016840 // cdna:Genscan chromosome:SGD1:V:234936:235490:1 // ensembl // 11 // --- /// YER042W // cdna:known chromosome:SGD1:V:234936:235490:1 gene:YER042W // ensembl // 11 // --- GENEFINDER00000019759 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene -1.25595578227759 -1.14812189884438 1.57039434793205 -1.14642251376209 1.16337978697207 Max fold change below threshold 4 1.57039434793205 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776520_at YNL211C.S1 Hypothetical protein 1.5703895785366 149.242980957031 209.48316192627 --- --- 5739 // mitochondrion // inferred from direct assay --- 162.997207641602 174.303146362305 124.182815551758 255.969116210938 0.000244141003349796 0.000244141003349796 0.00195312988944352 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL211C /GEN=VID27 /DB_XREF=GI:6324118 /SEG=NC_001146:-250054,250314 /DEF=Hypothetical ORF /NOTE=Ynl211cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005155 // YNL211C SGDID:S0005155, Chr XIV from 250314-250054, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020594 // cdna:GeneFinder chromosome:SGD1:XIV:250054:250314:-1 // ensembl // 11 // --- /// YNL211C // cdna:known chromosome:SGD1:XIV:250054:250314:-1 gene:YNL211C // ensembl // 11 // --- --- No cerevisiae_gene -1.37262817120831 1.06936277549958 1.15663162545865 -1.31255848015192 1.5703895785366 Max fold change below threshold 4 1.5703895785366 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779004_at YCL004W.S1 Phosphatidylglycerolphosphate synthase, catalyzes the synthesis of phosphatidylglycerolphosphate from CDP-diacylglycerol and sn-glycerol 3-phosphate in the first committed and rate-limiting step of cardiolipin biosynthesis 1.57035595378496 418.870468139648 671.113891601563 PGS1 8654 // phospholipid biosynthesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 8444 // CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity // inferred from mutant phenotype 644.794250488281 427.137054443359 410.603881835938 697.433532714844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL004W /GEN=PGS1 /DB_XREF=GI:10383778 /SEG=NC_001135:+109104,110669 /DEF=17 kDa phosphatidylglycerolphosphate synthase /NOTE=Pgs1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 9799363]; go_function: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity [goid GO:0008444] [evidence IMP] [pmid 9545322]; go_process: phospholipid biosynthesis [goid GO:0008654] [evidence IMP] [pmid 9545322] --- --- --- --- --- --- S0000510 // PGS1 SGDID:S0000510, Chr III from 109104-110669, Verified ORF // sgd // 10 // --- /// YCL004W // cdna:known chromosome:SGD1:III:109104:110669:1 gene:YCL004W // ensembl // 10 // --- --- No cerevisiae_gene -1.38985311916136 -1.50957226440719 1.02054019813317 -1.57035595378496 1.08163733188796 Max fold change below threshold 4 1.57035595378496 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777663_at YOR057W.S1 Probable cochaperone, regulates activity of Cyr1p (adenylyl cyclase); involved in assembly of the kinetochore complex, associates with the SCF (Skp1p/Cdc53p/F box protein) ubiquitin ligase complex 1.56941543823834 1433.51934814453 1273.45001220703 SGT1 74 // regulation of cell cycle // traceable author statement /// 6461 // protein complex assembly // inferred from genetic interaction /// 6461 // protein complex assembly // inferred from direct assay /// 6461 // protein complex assembly // inferred from sequence similarity /// 16567 // protein ubiquitination // traceable author statement /// 19933 // cAMP-mediated signaling // inferred from genetic interaction /// 19933 // cAMP-mediated signaling // inferred from physical interaction /// 51382 // kinetochore assembly // inferred from direct assay 151 // ubiquitin ligase complex // inferred from direct assay 51087 // chaperone binding // inferred from sequence similarity 1257.70227050781 1553.75842285156 1313.2802734375 1289.19775390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR057W /GEN=SGT1 /DB_XREF=GI:6324631 /SEG=NC_001147:+432187,433374 /DEF=Probable cochaperone, regulates activity of Cyr1p (adenylyl cyclase); involved in assembly of the kinetochore complex, associates with the SCF (Skp1p/Cdc53p/F box protein) ubiquitin ligase complex /NOTE=Sgt1p; go_component: ubiquitin ligase complex [goid GO:0000151] [evidence IDA] [pmid 10445024]; go_function: co-chaperone activity [goid GO:0003767] [evidence ISS] [pmid 12456005]; go_process: cAMP-mediated signaling [goid GO:0019933] [evidence IGI,IPI] [pmid 12456005]; go_process: centromere/kinetochore complex maturation [goid GO:0000069] [evidence IDA] [pmid 10445024]; go_process: protein complex assembly [goid GO:0006461] [evidence IGI,ISS] [pmid 12456005]; go_process: protein ubiquitination [goid GO:0016567] [evidence TAS] [pmid 12456005]; go_process: regulation of cell cycle [goid GO:0000074] [evidence TAS] [pmid 11847307] --- --- --- --- --- --- S0005583 // SGT1 SGDID:S0005583, Chr XV from 432187-433374, Verified ORF // sgd // 10 // --- /// GENEFINDER00000022754 // cdna:GeneFinder chromosome:SGD1:XV:432187:433374:1 // ensembl // 10 // --- /// YOR057W // cdna:known chromosome:SGD1:XV:432187:433374:1 gene:YOR057W // ensembl // 10 // --- --- No cerevisiae_gene -1.56941543823834 1.23539446440231 -1.22919953115958 1.04419011099284 1.02504208200699 Max fold change below threshold 4 1.56941543823834 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771638_at YDR237W.S1 Mitochondrial ribosomal protein of the large subunit 1.56929295218123 585.078186035156 861.841125488281 MRPL7 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 830.188537597656 529.020751953125 641.135620117188 893.493713378906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR237W /GEN=MRPL7 /DB_XREF=GI:6320443 /SEG=NC_001136:+936607,937485 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl7p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0002645 // MRPL7 SGDID:S0002645, Chr IV from 936609-937487, Verified ORF // sgd // 11 // --- /// YDR237W // cdna:known chromosome:SGD1:IV:936609:937487:1 gene:YDR237W // ensembl // 11 // --- --- No cerevisiae_gene -1.42680423985627 -1.56929295218123 1.1073167547052 -1.29487196085894 1.07625397474704 Max fold change below threshold 4 1.56929295218123 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770884_s_at YDL229W.S1 Cytoplasmic ATPase that is a ribosome-associated molecular chaperone; may be involved in the folding of newly-synthesized polypeptide chains; member of the heat shock protein 70 (HSP70) family; homolog of SSB1 /// Cytoplasmic ATPase that is a ribosome-associated molecular chaperone; may be involved in the folding of newly-synthesized polypeptide chains; member of the heat shock protein 70 (HSP70) family; interacts with the phosphatase subunit Reg1p 1.56925080955483 6691.57397460938 6375.97387695313 SSB2 /// SSB1 6412 // protein biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5844 // polysome // traceable author statement /// 5625 // soluble fraction // inferred from direct assay 16887 // ATPase activity // inferred from direct assay /// 51082 // unfolded protein binding // inferred from sequence similarity /// 51082 // unfolded protein binding // traceable author statement 7230.4755859375 7544.60498046875 5838.54296875 5521.47216796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL229W /GEN=SSB1 /DB_XREF=GI:6319972 /SEG=NC_001136:+44066,45907 /DEF=Stress-Seventy Subfamily B; involved in translation, perhaps by guiding the nascent chain through the ribosome /NOTE=Ssb1p; go_component: polysome [goid GO:0005844] [evidence TAS] [pmid 8336673]; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 11746603]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 9860955]; go_function: chaperone activity [goid GO:0003754] [evidence TAS] [pmid 8336673]; go_function: chaperone activity [goid GO:0003754] [evidence ISS] [pmid 9860955]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 8336673] --- --- --- --- --- --- S0002388 // SSB1 SGDID:S0002388, Chr IV from 44066-45907, Verified ORF // sgd // 11 // --- /// S0005153 // SSB2 SGDID:S0005153, Chr XIV from 252058-253899, Verified ORF // sgd // 11 // --- /// M25395 // Yeast (S.cerevisiae) heat shock protein 70 (YG101, SSB1) mRNA, complete cds. // gb // 11 // --- /// GENEFINDER00000023818 // cdna:GeneFinder chromosome:SGD1:IV:44066:45907:1 // ensembl // 11 // --- /// GENSCAN00000024931 // cdna:Genscan chromosome:SGD1:IV:44066:45907:1 // ensembl // 11 // --- /// GENSCAN00000019873 // cdna:Genscan chromosome:SGD1:XIV:252058:253899:1 // ensembl // 11 // --- /// GENEFINDER00000020539 // cdna:GeneFinder chromosome:SGD1:XIV:252058:253899:1 // ensembl // 11 // --- /// YDL229W // cdna:known chromosome:SGD1:IV:44066:45907:1 gene:YDL229W // ensembl // 11 // --- /// YNL209W // cdna:known chromosome:SGD1:XIV:252058:253899:1 gene:YNL209W // ensembl // 11 // --- YDL228C // ensembl // 11 // Negative Strand Matching Probes No cerevisiae_gene -1.12489625979184 1.04344519123226 -1.56925080955483 -1.2384041060651 -1.30951952051539 Max fold change below threshold 4 1.56925080955483 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773198_at YMR122W-A.S1 Hypothetical protein 1.56924882340629 5899.94506835938 5129.07397460938 --- --- 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay --- 5767.38671875 6909.73095703125 4890.1591796875 4490.76123046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR122W-A /GEN=RPL15B /DB_XREF=GI:9755340 /SEG=NC_001145:+511314,511568 /DEF=Hypothetical ORF /NOTE=Ymr122w-ap; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0007524 // span:66-83 // numtm:1 S0007524 // YMR122W-A SGDID:S0007524, Chr XIII from 511314-511568, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022002 // cdna:GeneFinder chromosome:SGD1:XIII:511314:511568:1 // ensembl // 11 // --- /// YMR122W-A // cdna:known chromosome:SGD1:XIII:511314:511568:1 gene:YMR122W-A // ensembl // 11 // --- GENSCAN00000018816 // ensembl // 8 // Negative Strand Matching Probes No cerevisiae_gene -1.13122718758988 1.19806964470883 -1.56924882340629 -1.17938629537997 -1.28427819310892 Max fold change below threshold 4 1.56924882340629 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774274_at YCR060W.S1 HSP90 cofactor; interacts with Hsp82p, Pih1p, Rvb1 and Rvb2, contains a single TPR domain with at least two TPR motifs 1.56849564983991 356.537063598633 302.297653198242 TAH1 6457 // protein folding // inferred from mutant phenotype /// 6457 // protein folding // inferred from physical interaction /// 6457 // protein folding // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 51087 // chaperone binding // inferred from mutant phenotype /// 51087 // chaperone binding // inferred from physical interaction 273.329223632813 284.358428955078 428.715698242188 331.266082763672 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR060W /GEN=YIH1 /DB_XREF=GI:6319905 /SEG=NC_001135:+224394,224729 /DEF=Hypothetical ORF /NOTE=Ycr060wp --- --- --- --- --- --- S0000656 // TAH1 SGDID:S0000656, Chr III from 224394-224729, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022500 // cdna:Genscan chromosome:SGD1:III:224394:224729:1 // ensembl // 11 // --- /// GENEFINDER00000023384 // cdna:GeneFinder chromosome:SGD1:III:224394:224729:1 // ensembl // 11 // --- /// YCR060W // cdna:known chromosome:SGD1:III:224394:224729:1 gene:YCR060W // ensembl // 11 // --- --- No cerevisiae_gene 1.34442902167063 1.04035135788145 1.33187672975861 1.56849564983991 1.21196730580368 Max fold change below threshold 4 1.56849564983991 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773228_at YPR047W.S1 Mitochondrial phenylalanyl-tRNA synthetase alpha subunit, active as a monomer, unlike the cytoplasmic subunit which is active as a dimer complexed to a beta subunit dimer; similar to the alpha subunit of E. coli phenylalanyl-tRNA synthetase 1.56839198140129 388.631866455078 491.797012329102 MSF1 6412 // protein biosynthesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from direct assay 4826 // phenylalanine-tRNA ligase activity // inferred from mutant phenotype /// 4826 // phenylalanine-tRNA ligase activity // inferred from sequence similarity 448.589447021484 286.018707275391 491.245025634766 535.004577636719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR047W /GEN=MSF1 /DB_XREF=GI:37362703 /SEG=NC_001148:+657524,658933 /DEF=alpha subunit of yeast mitochondrial phenylalanyl-tRNA synthetase /NOTE=Msf1p; go_component: mitochondrion [goid GO:0005739] [evidence IMP] [pmid 3029120]; go_function: phenylalanine-tRNA ligase activity [goid GO:0004826] [evidence IMP,ISS] [pmid 3029120]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP] [pmid 3029120] --- --- --- --- --- --- S0006251 // MSF1 SGDID:S0006251, Chr XVI from 657526-658935, Verified ORF // sgd // 11 // --- /// GENSCAN00000017221 // cdna:Genscan chromosome:SGD1:XVI:657544:658935:1 // ensembl // 11 // --- /// GENEFINDER00000020770 // cdna:GeneFinder chromosome:SGD1:XVI:657799:658935:1 // ensembl // 11 // --- /// YPR047W // cdna:known chromosome:SGD1:XVI:657526:658935:1 gene:YPR047W // ensembl // 11 // --- --- No cerevisiae_gene 1.30144273441756 -1.56839198140129 1.50514725826173 1.09508823467985 1.19263745767763 Max fold change below threshold 4 1.56839198140129 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778780_at YML009C.S1 Mitochondrial ribosomal protein of the large subunit 1.56832488718493 2157.79626464844 1622.74353027344 MRPL39 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 1593.92468261719 2499.79174804688 1815.80078125 1651.56237792969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML009C /GEN=MRPL39 /DB_XREF=GI:6323634 /SEG=NC_001145:-251304,251516 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl39p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0004468 // MRPL39 SGDID:S0004468, Chr XIII from 251516-251304, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018710 // cdna:Genscan chromosome:SGD1:XIII:251304:251516:-1 // ensembl // 11 // --- /// YML009C // cdna:known chromosome:SGD1:XIII:251304:251516:-1 gene:YML009C // ensembl // 11 // --- --- No cerevisiae_gene -1.39020322892975 1.56832488718493 1.2193551702475 1.13920111850486 1.03616086502774 Max fold change below threshold 4 1.56832488718493 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773785_at YPR108W.S1 Essential, non-ATPase regulatory subunit of the 26S proteasome, similar to another S. cerevisiae regulatory subunit, Rpn5p, as well as to mammalian proteasome subunits 1.56815034709095 1863.443359375 2626.34558105469 RPN7 6511 // ubiquitin-dependent protein catabolism // traceable author statement 8541 // proteasome regulatory particle, lid subcomplex (sensu Eukaryota) // inferred from physical interaction 5198 // structural molecule activity // inferred from mutant phenotype 2695.67724609375 1719.01708984375 2007.86962890625 2557.01391601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR108W /GEN=RPN7 /DB_XREF=GI:6325365 /SEG=NC_001148:+742450,743739 /DEF=Regulatory Particle Non-ATPase, homolog of mammalian proteasomal subunit S10/p44 /NOTE=Rpn7p; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence TAS] [pmid 9697412]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 9697412]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 9697412] --- --- --- --- --- --- S0006312 // RPN7 SGDID:S0006312, Chr XVI from 742452-743741, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020894 // cdna:GeneFinder chromosome:SGD1:XVI:742452:743741:1 // ensembl // 11 // --- /// GENSCAN00000017263 // cdna:Genscan chromosome:SGD1:XVI:742962:743741:1 // ensembl // 11 // --- /// YPR108W // cdna:known chromosome:SGD1:XVI:742452:743741:1 gene:YPR108W // ensembl // 11 // --- --- No cerevisiae_gene -1.22768727341866 -1.56815034709095 -1.08953288059368 -1.34255591462986 -1.05422861768941 Max fold change below threshold 4 1.56815034709095 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779940_at YGR191W.S1 High-affinity histidine permease, also involved in the transport of manganese ions 1.56804204712338 717.144378662109 809.825897216797 HIP1 6828 // manganese ion transport // inferred from mutant phenotype /// 15817 // L-histidine transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from mutant phenotype 5290 // L-histidine transporter activity // inferred from sequence similarity /// 5290 // L-histidine transporter activity // inferred from mutant phenotype 801.207641601563 644.822937011719 789.4658203125 818.444152832031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR191W /GEN=HIP1 /DB_XREF=GI:6321629 /SEG=NC_001139:+880423,882234 /DEF=High-affinity histidine permease, also involved in the transport of manganese ions /NOTE=Hip1p; go_component: plasma membrane [goid GO:0005886] [evidence IMP,ISS] [pmid 3905514]; go_function: L-histidine transporter activity [goid GO:0005290] [evidence IMP,ISS] [pmid 3905514]; go_process: L-histidine transport [goid GO:0015817] [evidence IMP] [pmid 3905514]; go_process: manganese ion transport [goid GO:0006828] [evidence IMP] [pmid 9790586] --- --- --- --- --- S0003423 // span:94-116,136-158,170-192,207-226,239-261,276-298,322-344,380-402,423-440,450-472,499-521,531-548 // numtm:12 S0003423 // HIP1 SGDID:S0003423, Chr VII from 880425-882236, Verified ORF // sgd // 11 // --- /// GENSCAN00000019489 // cdna:Genscan chromosome:SGD1:VII:880425:882236:1 // ensembl // 11 // --- /// GENEFINDER00000021547 // cdna:GeneFinder chromosome:SGD1:VII:880425:882236:1 // ensembl // 11 // --- /// YGR191W // cdna:known chromosome:SGD1:VII:880425:882236:1 gene:YGR191W // ensembl // 11 // --- --- No cerevisiae_gene 1.56804204712338 -1.24252348298057 1.0054072579951 -1.01487312178305 1.02151316379861 Max fold change below threshold 4 1.56804204712338 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771937_at YLR323C.S1 Essential protein, component of a complex containing Cef1p; has similarity to S. pombe Cwf24p 1.56793417925985 213.826965332031 317.757690429688 CWC24 --- 5681 // spliceosome complex // inferred from physical interaction --- 312.700805664063 199.434906005859 228.219024658203 322.814575195313 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR323C /GEN=CWC24 /DB_XREF=GI:6323355 /SEG=NC_001144:-778173,778952 /DEF=Essential protein, component of a complex containing Cef1p; has similarity to S. pombe Cwf24p /NOTE=Cwc24p; go_component: spliceosome complex [goid GO:0005681] [evidence IPI] [pmid 11884590]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004315 // CWC24 SGDID:S0004315, Chr XII from 778952-778173, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018068 // cdna:Genscan chromosome:SGD1:XII:778173:778952:-1 // ensembl // 11 // --- /// YLR323C // cdna:known chromosome:SGD1:XII:778173:778952:-1 gene:YLR323C // ensembl // 11 // --- --- No cerevisiae_gene -1.32952620241935 -1.56793417925985 1.13822709626041 -1.37017852097293 1.03234327941616 Max fold change below threshold 4 1.56793417925985 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779412_at YNR001C.S1 Citrate synthase, catalyzes the condensation of acetyl coenzyme A and oxaloacetate to form citrate; the rate-limiting enzyme of the TCA cycle; nuclear encoded mitochondrial protein 1.56693108053283 8420.11987304688 5869.68920898438 CIT1 6099 // tricarboxylic acid cycle // traceable author statement /// 6101 // citrate metabolism // traceable author statement /// 6537 // glutamate biosynthesis // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5759 // mitochondrial matrix // traceable author statement 4108 // citrate (Si)-synthase activity // traceable author statement 6470.1875 10138.337890625 6701.90185546875 5269.19091796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR001C /GEN=CIT1 /DB_XREF=GI:6324328 /SEG=NC_001146:-629621,631060 /DEF=citrate synthase. Nuclear encoded mitochondrial protein. /NOTE=Cit1p; go_component: mitochondrial matrix [goid GO:0005759] [evidence TAS] [pmid 9175438]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11914276]; go_function: citrate (Si)-synthase activity [goid GO:0004108] [evidence TAS] [pmid 9175438]; go_process: citrate metabolism [goid GO:0006101] [evidence TAS] [pmid 9175438]; go_process: glutamate biosynthesis [goid GO:0006537] [evidence TAS] [pmid 9175438]; go_process: tricarboxylic acid cycle [goid GO:0006099] [evidence TAS] [pmid 9175438] --- --- --- --- --- --- S0005284 // CIT1 SGDID:S0005284, Chr XIV from 631061-629622, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020038 // cdna:Genscan chromosome:SGD1:XIV:629622:631061:-1 // ensembl // 11 // --- /// GENEFINDER00000020710 // cdna:GeneFinder chromosome:SGD1:XIV:629622:631061:-1 // ensembl // 11 // --- /// YNR001C // cdna:known chromosome:SGD1:XIV:629622:631061:-1 gene:YNR001C // ensembl // 11 // --- --- No cerevisiae_gene -1.20012469539382 1.56693108053283 -1.18354427948948 1.03581261833119 -1.22792808245677 Max fold change below threshold 4 1.56693108053283 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776878_at YOL137W.S1 Protein of unknown function containing 8 putative transmembrane seqments; ORF exhibits genomic organization compatible with a translational readthrough-dependent mode of expression 1.56662303792828 61.7999534606934 76.5511665344238 BSC6 --- 30136 // clathrin-coated vesicle // inferred from direct assay /// 30137 // COPI-coated vesicle // inferred from direct assay --- 76.5118255615234 56.3508529663086 67.2490539550781 76.5905075073242 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL137W /GEN=BSC6 /DB_XREF=GI:6324435 /SEG=NC_001147:+65620,67113 /DEF=Bypass of Stop Codon transcript encoded by this ORF shows a high level of stop codon bypass /NOTE=Bsc6p; go_component: COPI-coated vesicle [goid GO:0030137] [evidence IDA] [pmid 14562095]; go_component: clathrin-coated vesicle [goid GO:0030136] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005497 // span:74-93,140-162,167-189,204-226,231-253,303-325,337-359,374-392,397-419,434-456,463-485 // numtm:11 S0005497 // BSC6 SGDID:S0005497, Chr XV from 65620-67113, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022688 // cdna:GeneFinder chromosome:SGD1:XV:65620:67113:1 // ensembl // 11 // --- /// YOL137W // cdna:known chromosome:SGD1:XV:65620:67113:1 gene:YOL137W // ensembl // 11 // --- --- No cerevisiae_gene 1.56662303792828 -1.35777581942316 1.18026270576488 -1.13773831841014 1.00102836320037 Max fold change below threshold 4 1.56662303792828 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778759_at YHR193C.S1 Alpha subunit of the heteromeric nascent polypeptide-associated complex (NAC) involved in protein sorting and translocation, associated with cytoplasmic ribosomes 1.56659960507407 2989.48229980469 4345.40405273438 EGD2 6444 // nascent polypeptide association // inferred from physical interaction 5854 // nascent polypeptide-associated complex // inferred from direct assay 51082 // unfolded protein binding // inferred from mutant phenotype 4624.404296875 3027.0908203125 2951.87377929688 4066.40380859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR193C /GEN=EGD2 /DB_XREF=GI:6321987 /SEG=NC_001140:-487710,488234 /DEF=GAL4 enhancer protein, homolog of human alpha NAC subunit of the nascent-polypeptide-associated complex /NOTE=Egd2p; go_component: nascent polypeptide-associated complex [goid GO:0005854] [evidence IDA] [pmid 10219998]; go_function: chaperone activity [goid GO:0003754] [evidence IMP] [pmid 9482879]; go_process: nascent polypeptide association [goid GO:0006444] [evidence IPI] [pmid 10219998] --- --- --- --- --- --- S0001236 // EGD2 SGDID:S0001236, Chr VIII from 488235-487711, reverse complement, Verified ORF // sgd // 11 // --- /// L12222 // Saccharomyces cerevisiae Egd2p (EGD2) mRNA, partial cds. // gb // 10 // --- /// GENSCAN00000016715 // cdna:Genscan chromosome:SGD1:VIII:487711:488235:-1 // ensembl // 11 // --- /// GENEFINDER00000020209 // cdna:GeneFinder chromosome:SGD1:VIII:487711:488235:-1 // ensembl // 11 // --- /// YHR193C // cdna:known chromosome:SGD1:VIII:487711:488235:-1 gene:YHR193C // ensembl // 11 // --- --- No cerevisiae_gene 1.08214423732787 -1.52767279588843 -1.30242033577674 -1.56659960507407 -1.13722210448013 Max fold change below threshold 4 1.56659960507407 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775534_at YOR356W.S1 Hypothetical protein 1.56645335520279 1522.09259033203 2141.28698730469 --- 19677 // NAD catabolism // inferred from physical interaction 5739 // mitochondrion // inferred from physical interaction /// 5739 // mitochondrion // inferred from direct assay 16649 // oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor // inferred from sequence similarity 2163.27954101563 1381.00476074219 1663.18041992188 2119.29443359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR356W /GEN=GDS1 /DB_XREF=GI:6324932 /SEG=NC_001147:+1007217,1009112 /DEF=Hypothetical ORF /NOTE=Yor356wp; go_component: mitochondrion [goid GO:0005739] [evidence IPI] [pmid 11502169]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14576278]; go_function: oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor [goid GO:0016649] [evidence ISS] [pmid 10592175]; go_process: NADH catabolism [goid GO:0006737] [evidence IPI] [pmid 11502169] --- --- --- --- --- --- S0005883 // YOR356W SGDID:S0005883, Chr XV from 1007217-1009112, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017808 // cdna:Genscan chromosome:SGD1:XV:1007217:1009112:1 // ensembl // 11 // --- /// GENEFINDER00000022912 // cdna:GeneFinder chromosome:SGD1:XV:1007259:1009112:1 // ensembl // 11 // --- /// YOR356W // cdna:known chromosome:SGD1:XV:1007217:1009112:1 gene:YOR356W // ensembl // 11 // --- --- No cerevisiae_gene -1.43475582471282 -1.56645335520279 -1.00300830282978 -1.30068843710729 -1.02075459960855 Max fold change below threshold 4 1.56645335520279 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777851_at SPCC1620.11.S1 --- 1.56632240125878 --- --- --- --- 4.81384754180908 6.86702394485474 6.82144117355347 5.14781427383423 0.194580003619194 0.432372987270355 0.0952147990465164 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1620.11 /DEF=nucleoporin --- --- --- --- --- --- SPCC1620.11 // |||nucleoporin|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.56632240125878 1.42651462997394 -1.03980670912878 1.41704553671634 1.06937625862153 Max fold change below threshold 4 1.56632240125878 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774739_at YIL116W.S1 Histidinol-phosphate aminotransferase, catalyzes the seventh step in histidine biosynthesis; responsive to general control of amino acid biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts 1.56555525256341 959.791168212891 1280.35882568359 HIS5 105 // histidine biosynthesis // traceable author statement 5622 // intracellular // traceable author statement 4400 // histidinol-phosphate transaminase activity // traceable author statement 1234.16418457031 824.972473144531 1094.60986328125 1326.55346679688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL116W /GEN=HIS5 /DB_XREF=GI:6322075 /SEG=NC_001141:+142925,144082 /DEF=Histidinol-phosphate aminotransferase, catalyzes the seventh step in histidine biosynthesis; responsive to general control of amino acid biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts /NOTE=His5p; go_component: cell [goid GO:0005623] [evidence TAS] [pmid 8852895]; go_function: histidinol-phosphate transaminase activity [goid GO:0004400] [evidence TAS] [pmid 8852895]; go_process: histidine biosynthesis [goid GO:0000105] [evidence TAS] [pmid 8852895] --- --- --- ec // 1A11_CUCMA // (P23599) 1-aminocyclopropane-1-carboxylate synthase CMW33 (EC 4.4.1.14) (ACC synthase) (S-adenosyl-L-methionine methylthioadenosine-lyase) // 1.0E-8 --- --- S0001378 // HIS5 SGDID:S0001378, Chr IX from 142925-144082, Verified ORF // sgd // 11 // --- /// GENSCAN00000016389 // cdna:Genscan chromosome:SGD1:IX:142925:144082:1 // ensembl // 11 // --- /// GENEFINDER00000019137 // cdna:GeneFinder chromosome:SGD1:IX:142925:144082:1 // ensembl // 11 // --- /// YIL116W // cdna:known chromosome:SGD1:IX:142925:144082:1 gene:YIL116W // ensembl // 11 // --- --- No cerevisiae_gene 1.56555525256341 -1.49600650293951 -1.0602355903612 -1.12749229288938 1.07485979854352 Max fold change below threshold 4 1.56555525256341 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773342_at YGR202C.S1 Cholinephosphate cytidylyltransferase, also known as CTP:phosphocholine cytidylyltransferase, rate-determining enzyme of the CDP-choline pathway for phosphatidylcholine synthesis, inhibited by Sec14p, activated upon lipid-binding 1.56534377358307 707.259429931641 772.42724609375 PCT1 6656 // phosphatidylcholine biosynthesis // inferred from direct assay /// 6657 // CDP-choline pathway // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5635 // nuclear membrane // inferred from direct assay /// 5794 // Golgi apparatus // traceable author statement 4105 // choline-phosphate cytidylyltransferase activity // inferred from direct assay 822.657897949219 888.974304199219 525.544555664063 722.196594238281 0.00122069998178631 0.00195312988944352 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR202C /GEN=PCT1 /DB_XREF=GI:6321641 /SEG=NC_001139:-903477,904751 /DEF=phosphorylcholine transferase; or cholinephosphate cytidylyltransferase /NOTE=Pct1p; go_component: Golgi apparatus [goid GO:0005794] [evidence TAS] [pmid 10397762]; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 12200438]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12200438]; go_function: choline-phosphate cytidylyltransferase activity [goid GO:0004105] [evidence IDA] [pmid 2826147]; go_process: CDP-choline pathway [goid GO:0006657] [evidence IDA] [pmid 10397762]; go_process: phosphatidylcholine biosynthesis [goid GO:0006656] [evidence IDA] [pmid 10397762] --- --- --- --- --- --- S0003434 // PCT1 SGDID:S0003434, Chr VII from 904753-903479, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019498 // cdna:Genscan chromosome:SGD1:VII:903479:904396:-1 // ensembl // 11 // --- /// GENEFINDER00000021748 // cdna:GeneFinder chromosome:SGD1:VII:903479:904753:-1 // ensembl // 11 // --- /// YGR202C // cdna:known chromosome:SGD1:VII:903479:904753:-1 gene:YGR202C // ensembl // 11 // --- --- No cerevisiae_gene -1.30968337235797 1.08061237412941 -1.22507376977287 -1.56534377358307 -1.13910520281101 Max fold change below threshold 4 1.56534377358307 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775833_at YDR181C.S1 Subunit of the SAS complex (Sas2p, Sas4p, Sas5p), which acetylates free histones and nucleosomes and regulates transcriptional silencing; required for the HAT activity of Sas2p 1.56508396371954 425.421432495117 334.23291015625 SAS4 6348 // chromatin silencing at telomere // inferred from direct assay 784 // nuclear chromosome, telomeric region // inferred from curator /// 790 // nuclear chromatin // inferred from direct assay 4406 // H3/H4 histone acetyltransferase activity // inferred from direct assay /// 16407 // acetyltransferase activity // inferred from direct assay 316.389587402344 355.666595458984 495.17626953125 352.076232910156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR181C /GEN=SAS4 /DB_XREF=GI:6320387 /SEG=NC_001136:-825903,827348 /DEF=Involved in silencing at telomeres, HML and HMR /NOTE=Sas4p; go_component: nuclear chromatin [goid GO:0000790] [evidence IDA] [pmid 11731479]; go_component: nuclear chromosome, telomeric region [goid GO:0000784] [evidence IC] [pmid 11731479]; go_function: H3/H4 histone acetyltransferase activity [goid GO:0004406] [evidence IDA] [pmid 12626510]; go_function: acetyltransferase activity [goid GO:0016407] [evidence IDA] [pmid 11731479]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IDA] [pmid 11731479] --- --- --- --- --- --- S0002589 // SAS4 SGDID:S0002589, Chr IV from 827350-825905, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023925 // cdna:GeneFinder chromosome:SGD1:IV:825905:827350:-1 // ensembl // 11 // --- /// GENSCAN00000025236 // cdna:Genscan chromosome:SGD1:IV:825905:827350:-1 // ensembl // 11 // --- /// YDR181C // cdna:known chromosome:SGD1:IV:825905:827350:-1 gene:YDR181C // ensembl // 11 // --- --- No cerevisiae_gene -1.46754395538363 1.12414127904498 1.54090637875027 1.56508396371954 1.11279336276775 Max fold change below threshold 4 1.56508396371954 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776556_at YOR372C.S1 Transcriptional activator essential for nuclear division; localized to the nucleus; essential component of the mechanism that activates the expression of a set of late-S-phase-specific genes 1.56502214987426 441.823425292969 664.080718994141 NDD1 117 // G2/M-specific transcription in mitotic cell cycle // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 16563 // transcriptional activator activity // inferred from direct assay /// 16563 // transcriptional activator activity // inferred from mutant phenotype 638.616821289063 475.590759277344 408.056091308594 689.544616699219 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR372C /GEN=NDD1 /DB_XREF=GI:6324948 /SEG=NC_001147:-1034803,1036467 /DEF=Nuclear Division Defective 1 /NOTE=Ndd1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10207056]; go_function: transcriptional activator activity [goid GO:0016563] [evidence IDA,IMP] [pmid 10207056]; go_process: G2/M-specific transcription in mitotic cell cycle [goid GO:0000117] [evidence IMP] [pmid 10207056] --- --- --- --- --- --- S0005899 // NDD1 SGDID:S0005899, Chr XV from 1036467-1034803, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022781 // cdna:GeneFinder chromosome:SGD1:XV:1034803:1036467:-1 // ensembl // 11 // --- /// YOR372C // cdna:known chromosome:SGD1:XV:1034803:1036467:-1 gene:YOR372C // ensembl // 11 // --- --- No cerevisiae_gene 1.10745889984018 -1.34278643735517 1.07227897511808 -1.56502214987426 1.07974703094628 Max fold change below threshold 4 1.56502214987426 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778103_at YGR234W.S1 Nitric oxide oxidoreductase, flavohemoglobin involved in nitric oxide detoxification; plays a role in the oxidative and nitrosative stress responses 1.56480728587994 7206.08544921875 4960.25537109375 YHB1 6950 // response to stress // inferred from direct assay 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5759 // mitochondrial matrix // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 16966 // nitric oxide reductase activity // inferred from mutant phenotype 5575.63916015625 8724.80078125 5687.3701171875 4344.87158203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR234W /GEN=YHB1 /DB_XREF=GI:6321673 /SEG=NC_001139:+959906,961105 /DEF=may play a role in the oxidative stress response /NOTE=Yhb1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ISS] [pmid 1594608]; go_process: response to stress [goid GO:0006950] [evidence IDA] [pmid 9545281] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 0.0 --- S0003466 // YHB1 SGDID:S0003466, Chr VII from 959907-961106, Verified ORF // sgd // 11 // --- /// L07070 // Saccharomyces cerevisiae (clone TA35) flavohemoglobin mRNA sequence. // gb // 9 // --- /// GENSCAN00000019520 // cdna:Genscan chromosome:SGD1:VII:959907:961106:1 // ensembl // 11 // --- /// GENEFINDER00000021428 // cdna:GeneFinder chromosome:SGD1:VII:959907:961106:1 // ensembl // 11 // --- /// YGR234W // cdna:known chromosome:SGD1:VII:959907:961106:1 gene:YGR234W // ensembl // 11 // --- --- No cerevisiae_gene -1.04600622863704 1.56480728587994 -1.2518273821635 1.02003912983281 -1.28326903451301 Max fold change below threshold 4 1.56480728587994 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772476_at SPBC16A3.09c.S1 --- 1.56471463778693 --- --- --- --- 12.2071437835693 16.6140232086182 19.1006965637207 8.94797992706299 0.334473013877869 0.030273400247097 0.00585938012227416 0.149657994508743 A P P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16A3.09c /GEN=ufd1 /DEF=Cdc48-Ufd1-Npl4 complex component (putative) --- --- --- --- --- --- AJ005825 // Schizosaccharomyces pombe mRNA for Ufd1 protein. // gb // 11 // --- /// SPBC16A3.09c // |ufd1||Cdc48-Ufd1-Npl4 complex component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- AF034137 // gb // 4 // Cross Hyb Matching Probes No No -1.46665476548406 1.36100823445534 -1.00975779920268 1.56471463778693 -1.36423459630805 Max fold change below threshold 4 1.56471463778693 Max fold change below threshold APPPPA No 4 0 APPA 2 2 0 No No 1 < x = 2
1774227_at YFR042W.S1 Protein required for cell viability 1.56469903614977 322.814407348633 472.937637329102 --- --- --- --- 458.612915039063 293.099761962891 352.529052734375 487.262359619141 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR042W /GEN=ERJ5 /DB_XREF=GI:14318567 /SEG=NC_001138:+238445,239047 /DEF=Protein required for cell viability /NOTE=Yfr042wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001938 // span:13-35,45-67,140-162,177-194 // numtm:4 S0001938 // YFR042W SGDID:S0001938, Chr VI from 238445-239047, Uncharacterized ORF // sgd // 11 // --- /// YFR042W // cdna:known chromosome:SGD1:VI:238445:239047:1 gene:YFR042W // ensembl // 11 // --- --- No cerevisiae_gene -1.34527226901814 -1.56469903614977 1.41654402752014 -1.30092232535688 1.06246977274427 Max fold change below threshold 4 1.56469903614977 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777956_at YJR006W.S1 DNA polymerase III (delta) 55 kDa subunit, essential for cell viability; involved in DNA replication and DNA repair 1.56433149387167 503.059326171875 636.863555908203 HYS2 6272 // leading strand elongation // traceable author statement /// 6273 // lagging strand elongation // traceable author statement /// 6280 // mutagenesis // traceable author statement /// 6284 // base-excision repair // traceable author statement /// 6289 // nucleotide-excision repair // traceable author statement /// 6298 // mismatch repair // traceable author statement /// 6301 // postreplication repair // traceable author statement 5659 // delta DNA polymerase complex // traceable author statement 3891 // delta DNA polymerase activity // traceable author statement 572.283569335938 481.503662109375 524.614990234375 701.443542480469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR006W /GEN=HYS2 /DB_XREF=GI:6322465 /SEG=NC_001142:+449116,450579 /DEF=DNA polymerase III (delta) 55 kDa subunit, essential for cell viability; involved in DNA replication and DNA repair /NOTE=Hys2p; go_component: delta DNA polymerase complex [goid GO:0005659] [evidence TAS] [pmid 9745046]; go_function: delta DNA polymerase activity [goid GO:0003891] [evidence TAS] [pmid 9745046]; go_process: base-excision repair [goid GO:0006284] [evidence TAS] [pmid 9745046]; go_process: lagging strand elongation [goid GO:0006273] [evidence TAS] [pmid 9745046]; go_process: leading strand elongation [goid GO:0006272] [evidence TAS] [pmid 9745046]; go_process: mismatch repair [goid GO:0006298] [evidence TAS] [pmid 10072354]; go_process: mutagenesis [goid GO:0006280] [evidence TAS] [pmid 9745046]; go_process: nucleotide-excision repair [goid GO:0006289] [evidence TAS] [pmid 9745046]; go_process: postreplication repair [goid GO:0006301] [evidence TAS] [pmid 9745046] --- --- --- --- --- --- S0003766 // HYS2 SGDID:S0003766, Chr X from 449116-450579, Verified ORF // sgd // 11 // --- /// GENSCAN00000024138 // cdna:Genscan chromosome:SGD1:X:449116:450579:1 // ensembl // 11 // --- /// GENEFINDER00000024373 // cdna:GeneFinder chromosome:SGD1:X:449116:450579:1 // ensembl // 11 // --- /// YJR006W // cdna:known chromosome:SGD1:X:449116:450579:1 gene:YJR006W // ensembl // 11 // --- --- No cerevisiae_gene 1.56433149387167 -1.1885341989485 -1.17676639478434 -1.09086392876472 1.22569226178275 Max fold change below threshold 4 1.56433149387167 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779754_at YFL014W.S1 Plasma membrane localized protein that protects membranes from desiccation; induced by heat shock, oxidative stress, osmostress, stationary phase entry, glucose depletion, oleate and alcohol; regulated by the HOG and Ras-Pka pathways 1.56429189039864 HSP12 6972 // hyperosmotic response // traceable author statement /// 6979 // response to oxidative stress // traceable author statement /// 7155 // cell adhesion // inferred from direct assay /// 9269 // response to dessication // inferred from expression pattern /// 9269 // response to dessication // inferred from direct assay /// 9269 // response to dessication // inferred from sequence similarity /// 9408 // response to heat // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay --- 11551.880859375 13754.36328125 7384.73486328125 7496.28564453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL014W /GEN=HSP12 /DB_XREF=GI:14318506 /SEG=NC_001138:+107250,107579 /DEF=induced by heat shock, entry into stationary phase, depletion of glucose, and addition of lipids (fatty acids) /NOTE=Hsp12p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: heat shock protein activity [goid GO:0003773] [evidence TAS] [pmid 7565776]; go_process: cell adhesion [goid GO:0007155] [evidence IDA] [pmid 11816034]; go_process: hyperosmotic response [goid GO:0006972] [evidence TAS] [pmid 7565776]; go_process: response to dessication [goid GO:0009269] [evidence IEP,ISS] [pmid 10681550]; go_process: response to heat [goid GO:0009408] [evidence TAS] [pmid 7565776]; go_process: response to oxidative stress [goid GO:0006979] [evidence TAS] [pmid 7565776] --- --- --- --- --- --- S0001880 // HSP12 SGDID:S0001880, Chr VI from 107250-107579, Verified ORF // sgd // 11 // --- /// X55785 // Yeast hsp12 mRNA for a 12 kDa heat shock protein. // gb // 11 // --- /// GENEFINDER00000018592 // cdna:GeneFinder chromosome:SGD1:VI:106586:107579:1 // ensembl // 11 // --- /// YFL014W // cdna:known chromosome:SGD1:VI:107250:107579:1 gene:YFL014W // ensembl // 11 // --- --- No cerevisiae_gene -1.54504736873556 1.19066007074403 -1.29382383708034 -1.56429189039864 -1.54101396440281 Max fold change below threshold 4 1.56429189039864 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773060_at YER046W.S1 Meiosis-specific protein of unknown function, required for spore wall formation during sporulation; dispensible for both nuclear divisions during meiosis 1.56386102118441 542.204238891602 528.257614135742 SPO73 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 5829 // cytosol // inferred from direct assay --- 496.795623779297 505.496429443359 578.912048339844 559.719604492188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER046W /GEN=SPO73 /DB_XREF=GI:6320886 /SEG=NC_001137:+243179,243610 /DEF=Meiosis-specific protein of unknown function, required for spore wall formation during sporulation; dispensible for both nuclear divisions during meiosis /NOTE=Spo73p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 11470404] --- --- --- --- --- --- S0000848 // SPO73 SGDID:S0000848, Chr V from 243179-243610, Verified ORF // sgd // 11 // --- /// YER046W // cdna:known chromosome:SGD1:V:243179:243610:1 gene:YER046W // ensembl // 11 // --- --- No cerevisiae_gene 1.56386102118441 1.01751385327808 1.405083568099 1.16529216569151 1.12665969203635 Max fold change below threshold 4 1.56386102118441 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774498_at SPBC11G11.03.S1 --- 1.56328274986335 --- --- --- --- 13.5756978988647 9.95268440246582 21.2226543426514 12.7644367218018 0.24609400331974 0.398925989866257 0.149657994508743 0.274170011281967 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC11G11.03 /DEF=60S acidic ribosomal protein (predicted) --- --- --- --- --- --- SPBC11G11.03 // |||60S acidic ribosomal protein |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.47152005737575 -1.36402374976356 1.16741957988363 1.56328274986335 -1.06355636325709 Max fold change below threshold 4 1.56328274986335 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772864_at YKR100C.S1 Transmembrane protein of unknown function; localizes on the inner surface of the plasma membrane at the bud and in the daughter cell; affects the cell wall polymer composition 1.56292934633431 596.116271972656 773.678314208984 SKG1 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 131 // incipient bud site // inferred from direct assay /// 5933 // bud // inferred from direct assay /// 5934 // bud tip // inferred from direct assay --- 724.956726074219 595.32958984375 596.902954101563 822.39990234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR100C /GEN=BAS1 /DB_XREF=GI:42759863 /SEG=NC_001143:-638537,639604 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and bud /NOTE=Ykr100cp --- --- --- --- --- S0001808 // span:7-29 // numtm:1 S0001808 // SKG1 SGDID:S0001808, Chr XI from 639606-638539, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018501 // cdna:Genscan chromosome:SGD1:XI:638539:639606:-1 // ensembl // 11 // --- /// GENEFINDER00000023081 // cdna:GeneFinder chromosome:SGD1:XI:638539:639606:-1 // ensembl // 11 // --- /// YKR100C // cdna:known chromosome:SGD1:XI:638539:639606:-1 gene:YKR100C // ensembl // 11 // --- --- No cerevisiae_gene -1.56292934633431 -1.21774011982924 -1.03639835309766 -1.21453030361593 1.13441240389231 Max fold change below threshold 4 1.56292934633431 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774354_at YOL052C-A.S1 Multistress response protein, expression is activated by a variety of xenobiotic agents and environmental or physiological stresses 1.56291170669924 8770.39184570313 7906.16455078125 DDR2 6950 // response to stress // inferred from direct assay 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 9581.501953125 11283.68359375 6257.10009765625 6230.8271484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL052C-A /GEN=DDR2 /DB_XREF=GI:6324520 /SEG=NC_001147:-231568,231753 /DEF=Multistress response protein, expression is activated by a variety of xenobiotic agents and environmental or physiological stresses /NOTE=Ddr2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to stress [goid GO:0006950] [evidence IDA] [pmid 9473471] --- --- --- --- --- --- S0005413 // DDR2 SGDID:S0005413, Chr XV from 231753-231568, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022596 // cdna:GeneFinder chromosome:SGD1:XV:231568:231753:-1 // ensembl // 11 // --- /// YOL052C-A // cdna:known chromosome:SGD1:XV:231568:231753:-1 gene:YOL052C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.56291170669924 1.17765290337073 -1.31685244143193 -1.53130073094307 -1.53775762428713 Max fold change below threshold 4 1.56291170669924 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769549_at YOR271C.S1 Hypothetical protein 1.56275836290467 555.594604492188 668.972839355469 --- --- 5739 // mitochondrion // inferred from direct assay --- 628.659057617188 500.281677246094 610.907531738281 709.28662109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR271C /GEN=VPH1 /DB_XREF=GI:6324845 /SEG=NC_001147:-831056,832039 /DEF=Hypothetical ORF /NOTE=Yor271cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005797 // span:99-121,145-167,179-201,270-292 // numtm:4 S0005797 // YOR271C SGDID:S0005797, Chr XV from 832039-831056, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017705 // cdna:Genscan chromosome:SGD1:XV:831056:832039:-1 // ensembl // 11 // --- /// GENEFINDER00000022874 // cdna:GeneFinder chromosome:SGD1:XV:831056:832039:-1 // ensembl // 11 // --- /// YOR271C // cdna:known chromosome:SGD1:XV:831056:832039:-1 gene:YOR271C // ensembl // 11 // --- --- No cerevisiae_gene 1.56275836290467 -1.25661019823427 1.07031034131234 -1.02905763140355 1.12825324394779 Max fold change below threshold 4 1.56275836290467 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778589_at SPBC28E12.03.S1 --- 1.56254285372455 --- --- --- --- 8.59289360046387 7.08009719848633 8.96960163116455 8.27760601043701 0.14404296875 0.398925989866257 0.149657994508743 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC28E12.03 /GEN=rga4 /DEF=GTPase activating protein --- --- --- --- --- --- SPBC28E12.03 // |rga4||GTPase activating protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.06528261024035 -1.21366887481445 1.56254285372455 1.04383948506942 -1.0380892240618 Max fold change below threshold 4 1.56254285372455 Max fold change below threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778371_at YFR024C-A.S1 Protein containing a C-terminal SH3 domain; binds Las17p, which is a homolog of human Wiskott-Aldrich Syndrome protein involved in actin patch assembly and actin polymerization 1.56232214466331 938.558959960938 957.518218994141 LSB3 7015 // actin filament organization // RCA 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5935 // bud neck // inferred from direct assay --- 1003.33178710938 642.205444335938 1234.91247558594 911.704650878906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR024C-A /GEN=LSB3 /DB_XREF=GI:15530184 /SEG=NC_001138:-201948,203421 /DEF=LAs17 Binding protein /NOTE=Lsb3p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 14562095]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: actin filament organization [goid GO:0007015] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0002968 // LSB3 SGDID:S0002968, Chr VI from 203421-203375,203256-201948, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018600 // cdna:GeneFinder chromosome:SGD1:VI:201948:202754:-1 // ensembl // 11 // --- /// GENSCAN00000023265 // cdna:Genscan chromosome:SGD1:VI:201948:203069:-1 // ensembl // 11 // --- /// YFR024C-A // cdna:known chromosome:SGD1:VI:201948:203421:-1 gene:YFR024C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.34600080193821 -1.56232214466331 1.39380401771734 1.23081167311937 -1.10050089811666 Max fold change below threshold 4 1.56232214466331 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778241_at SPCC553.06.S1 --- 1.56211277115115 --- --- --- --- 7.78000020980835 9.41889476776123 7.97576856613159 5.35802888870239 0.0952147990465164 0.194580003619194 0.0239257998764515 0.129638999700546 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC553.06 /DEF=sequence orphan --- --- --- --- --- --- SPCC553.06 // |||oligosaccharyltransferase subunit|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.56211277115115 1.2106548218195 -1.28366681900981 1.02516302712646 -1.45202655144558 Max fold change below threshold 4 1.56211277115115 Max fold change below threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1775473_at YDR047W.S1 Uroporphyrinogen decarboxylase, catalyzes the fifth step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus; activity inhibited by Cu2+, Zn2+, Fe2+, Fe3+ and sulfhydryl-specific reagents 1.56197409655442 1061.92294311523 887.428131103516 HEM12 6783 // heme biosynthesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4853 // uroporphyrinogen decarboxylase activity // inferred from sequence similarity /// 4853 // uroporphyrinogen decarboxylase activity // inferred from mutant phenotype 817.771728515625 846.507629394531 1277.33825683594 957.084533691406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR047W /GEN=HEM12 /DB_XREF=GI:6320252 /SEG=NC_001136:+551856,552944 /DEF=Uroporphyrinogen decarboxylase, catalyzes the fifth step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus; activity inhibited by Cu2+, Zn2+, Fe2+, Fe3+ and sulfhydryl-specific reagents /NOTE=Hem12p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: uroporphyrinogen decarboxylase activity [goid GO:0004853] [evidence IMP,ISS] [pmid 8346678]; go_process: heme biosynthesis [goid GO:0006783] [evidence IMP] [pmid 7035824] --- --- --- --- --- --- S0002454 // HEM12 SGDID:S0002454, Chr IV from 551857-552945, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023460 // cdna:GeneFinder chromosome:SGD1:IV:551857:552945:1 // ensembl // 11 // --- /// GENSCAN00000025133 // cdna:Genscan chromosome:SGD1:IV:551857:552945:1 // ensembl // 11 // --- /// YDR047W // cdna:known chromosome:SGD1:IV:551857:552945:1 gene:YDR047W // ensembl // 11 // --- --- No cerevisiae_gene 1.40431300160945 1.03513926915897 1.01365083757937 1.56197409655442 1.17035659257707 Max fold change below threshold 4 1.56197409655442 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776141_at SPBC365.12c.S1 --- 1.5607631175231 --- --- --- --- 8.68506336212158 11.9209623336792 12.7810277938843 5.56462621688843 0.129638999700546 0.129638999700546 0.171387001872063 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC365.12c /GEN=ish1 /DEF=involved in response to stress (PMID 11751918) --- --- --- --- --- --- SPBC365.12c // |ish1||LEA domain protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.16690891757492 1.37258207990404 -1.07006981401573 1.47161019568683 -1.5607631175231 Max fold change below threshold 4 1.5607631175231 Max fold change below threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776854_at YMR124W.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck 1.56066529498785 601.021545410156 855.560302734375 --- --- 5737 // cytoplasm // inferred from direct assay --- 825.740539550781 600.801513671875 601.241577148438 885.380065917969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR124W /GEN=PKR1 /DB_XREF=GI:6323772 /SEG=NC_001145:+514455,517286 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck /NOTE=Ymr124wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004731 // YMR124W SGDID:S0004731, Chr XIII from 514455-517286, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022027 // cdna:GeneFinder chromosome:SGD1:XIII:514455:517286:1 // ensembl // 11 // --- /// GENSCAN00000018818 // cdna:Genscan chromosome:SGD1:XIII:514668:517286:1 // ensembl // 11 // --- /// YMR124W // cdna:known chromosome:SGD1:XIII:514455:517286:1 gene:YMR124W // ensembl // 11 // --- --- No cerevisiae_gene -1.56066529498785 -1.37439823429233 -1.07231653222419 -1.37339227846999 1.07222550366684 Max fold change below threshold 4 1.56066529498785 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772962_at YFR008W.S1 Protein involved in G1 cell cycle arrest in response to pheromone, in a pathway different from the Far1p-dependent pathway; interacts with Far3p, Far8p, Far9p, Far10p, and Far11p 1.56057141186799 102.757591247559 146.530433654785 FAR7 751 // cell cycle arrest in response to pheromone // inferred from mutant phenotype /// 751 // cell cycle arrest in response to pheromone // inferred from physical interaction --- --- 140.116195678711 89.7851867675781 115.729995727539 152.944671630859 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR008W /GEN=FAR7 /DB_XREF=GI:14318530 /SEG=NC_001138:+160529,161194 /DEF=Protein involved in G1 cell cycle arrest in response to pheromone, in a pathway different from the Far1p-dependent pathway; interacts with Far3p, Far8p, Far9p, Far10p, and Far11p /NOTE=Far7p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell cycle arrest in response to pheromone [goid GO:0000751] [evidence IMP,IPI] [pmid 12588993] --- --- --- --- --- --- S0001904 // FAR7 SGDID:S0001904, Chr VI from 160529-161194, Verified ORF // sgd // 11 // --- /// GENSCAN00000023250 // cdna:Genscan chromosome:SGD1:VI:160631:161194:1 // ensembl // 10 // --- /// YFR008W // cdna:known chromosome:SGD1:VI:160529:161194:1 gene:YFR008W // ensembl // 11 // --- --- No cerevisiae_gene -1.22522546203029 -1.56057141186799 1.23180224020177 -1.21071632983193 1.09155598244734 Max fold change below threshold 4 1.56057141186799 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770610_at YBR022W.S1 Phosphatase that is highly specific for ADP-ribose 1''-phosphate, a tRNA splicing metabolite; may have a role in regulation of tRNA splicing 1.5597857007817 129.871139526367 111.303234100342 POA1 6388 // tRNA splicing // traceable author statement --- 16791 // phosphoric monoester hydrolase activity // inferred from direct assay 103.147796630859 129.527725219727 130.214553833008 119.458671569824 0.000732421875 0.00585938012227416 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR022W /GEN=FUR4 /DB_XREF=GI:6319496 /SEG=NC_001134:+283700,284233 /DEF=Hypothetical ORF /NOTE=Ybr022wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: hydrolase activity [goid GO:0016787] [evidence IDA] [pmid 10550052]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000226 // YBR022W SGDID:S0000226, Chr II from 283738-284271, Uncharacterized ORF // sgd // 10 // --- /// YBR022W // cdna:known chromosome:SGD1:II:283738:284271:1 gene:YBR022W // ensembl // 10 // --- --- No cerevisiae_gene -1.51918962098546 1.25574883274797 1.5597857007817 1.26240751704095 1.15813110383092 Max fold change below threshold 4 1.5597857007817 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1774360_at YLR392C.S1 Hypothetical protein 1.55949287835786 504.165328979492 678.712951660156 --- --- 5737 // cytoplasm // inferred from direct assay --- 640.087158203125 470.350799560547 537.979858398438 717.338745117188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR392C /GEN=CCW14 /DB_XREF=GI:6323424 /SEG=NC_001144:-904749,906305 /DEF=Hypothetical ORF /NOTE=Ylr392cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004384 // YLR392C SGDID:S0004384, Chr XII from 906305-904749, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018115 // cdna:Genscan chromosome:SGD1:XII:904749:906305:-1 // ensembl // 11 // --- /// YLR392C // cdna:known chromosome:SGD1:XII:904749:906305:-1 gene:YLR392C // ensembl // 11 // --- --- No cerevisiae_gene -1.52442854033169 -1.36087184033952 1.55949287835786 -1.1897976257116 1.12068916853593 Max fold change below threshold 4 1.55949287835786 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776999_at YPL052W.S1 Regulator of ornithine decarboxylase (Spe1p), antizyme that binds to Spe1p to regulate ubiquitin-independent degradation; ribosomal frameshifting during synthesis of Oaz1p and its ubiquitin-mediated degradation are both polyamine-regulated 1.55946635219812 1159.77471923828 992.754058837891 OAZ1 30163 // protein catabolism // inferred from direct assay 5623 // cell // inferred from curator 4857 // enzyme inhibitor activity // inferred from direct assay 862.069519042969 1259.31884765625 1060.23059082031 1123.43859863281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL052W /GEN=KTR6 /DB_XREF=GI:6325205 /SEG=NC_001148:+459068,459673 /DEF=Hypothetical ORF /NOTE=Ypl052wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005973 // YPL052W SGDID:S0005973, Chr XVI from 459070-459675, Uncharacterized ORF // sgd // 11 // --- /// YPL052W // cdna:known chromosome:SGD1:XVI:459070:459675:1 gene:YPL052W // ensembl // 11 // --- --- No cerevisiae_gene 1.55946635219812 1.46080892531068 -1.21954552629007 1.22986669566665 1.30318793765032 Max fold change below threshold 4 1.55946635219812 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779702_at YGL192W.S1 Probable mRNA N6-adenosine methyltransferase that is required for IME1 transcript accumulation and for sporulation; expression is induced in starved MATa/MAT alpha diploid cells 1.5593133514096 671.664825439453 557.865081787109 IME4 7126 // meiosis // inferred from mutant phenotype /// 16556 // mRNA modification // inferred from mutant phenotype /// 16556 // mRNA modification // inferred from sequence similarity --- 8174 // mRNA methyltransferase activity // inferred from direct assay /// 8174 // mRNA methyltransferase activity // inferred from sequence similarity /// 8174 // mRNA methyltransferase activity // inferred from mutant phenotype 559.221313476563 619.568115234375 723.761535644531 556.508850097656 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL192W /GEN=IME4 /DB_XREF=GI:6321246 /SEG=NC_001139:+142250,144052 /DEF=Probable mRNA N6-adenosine methyltransferase that is required for IME1 transcript accumulation and for sporulation; expression is induced in starved MATa/MAT alpha diploid cells /NOTE=Ime4p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: mRNA methyltransferase activity [goid GO:0008174] [evidence IDA,IMP,ISS] [pmid 12384598]; go_process: mRNA modification [goid GO:0016556] [evidence IMP,ISS] [pmid 12384598]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 1545790] --- --- --- --- --- --- S0003160 // IME4 SGDID:S0003160, Chr VII from 142252-144054, Verified ORF // sgd // 11 // --- /// GENSCAN00000019205 // cdna:Genscan chromosome:SGD1:VII:142252:144054:1 // ensembl // 11 // --- /// GENEFINDER00000021627 // cdna:GeneFinder chromosome:SGD1:VII:142252:144054:1 // ensembl // 11 // --- /// YGL192W // cdna:known chromosome:SGD1:VII:142252:144054:1 gene:YGL192W // ensembl // 11 // --- --- No cerevisiae_gene -1.5593133514096 1.1079121991661 -1.09964457081606 1.29423095687297 -1.00487407051735 Max fold change below threshold 4 1.5593133514096 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775999_at YHR083W.S1 Essential component of the sorting and assembly machinery (SAM complex, aka TOB complex) of the mitochondrial outer membrane, which binds precursors of beta-barrel proteins and facilitates their insertion into the outer membrane 1.55930110381244 1627.35565185547 1101.89910888672 SAM35 45040 // mitochondrial outer membrane protein import // inferred from curator /// 45040 // mitochondrial outer membrane protein import // inferred from mutant phenotype 1401 // mitochondrial sorting and assembly machinery complex // inferred from direct assay /// 1401 // mitochondrial sorting and assembly machinery complex // inferred from mutant phenotype /// 5741 // mitochondrial outer membrane // inferred from direct assay /// 19898 // extrinsic to membrane // inferred from direct assay 5515 // protein binding // inferred from direct assay 1121.57885742188 1505.83215332031 1748.87915039063 1082.21936035156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR083W /GEN=SAM35 /DB_XREF=GI:6321875 /SEG=NC_001140:+272628,273617 /DEF=Essential component of the sorting and assembly machinery (SAM complex) of the mitochondrial outer membrane /NOTE=Sam35p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001125 // SAM35 SGDID:S0001125, Chr VIII from 272628-273617, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020311 // cdna:GeneFinder chromosome:SGD1:VIII:272628:273617:1 // ensembl // 11 // --- /// GENSCAN00000016626 // cdna:Genscan chromosome:SGD1:VIII:272652:273617:1 // ensembl // 11 // --- /// YHR083W // cdna:known chromosome:SGD1:VIII:272628:273617:1 gene:YHR083W // ensembl // 11 // --- --- No cerevisiae_gene -1.09630502518508 1.34260033822473 1.09534822366715 1.55930110381244 -1.03636924131308 Max fold change below threshold 4 1.55930110381244 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774303_at YDR303C.S1 One of 15 subunits of the 'Remodel the Structure of Chromatin' (RSC) complex; essential gene required for regulation of ribosomal protein genes and the cell wall/stress response; highly similar to Rsc30p 1.55902202156079 253.152938842773 432.912414550781 RSC3 74 // regulation of cell cycle // inferred from mutant phenotype /// 74 // regulation of cell cycle // inferred from genetic interaction /// 6355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 16586 // RSC complex // inferred from physical interaction 3677 // DNA binding // inferred from sequence similarity 375.129730224609 265.687255859375 240.618621826172 490.695098876953 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR303C /GEN=RSC3 /DB_XREF=GI:6320509 /SEG=NC_001136:-1068721,1071378 /DEF=Zinc cluster protein /NOTE=Rsc3p; go_component: RSC complex [goid GO:0016586] [evidence IPI] [pmid 11336698]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: DNA binding [goid GO:0003677] [evidence ISS] [pmid 11336698]; go_process: regulation of cell cycle [goid GO:0000074] [evidence IGI,IMP] [pmid 11336698]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence IMP] [pmid 11336698] --- --- --- --- --- --- S0002711 // RSC3 SGDID:S0002711, Chr IV from 1071380-1068723, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023644 // cdna:GeneFinder chromosome:SGD1:IV:1068723:1071380:-1 // ensembl // 11 // --- /// GENSCAN00000025333 // cdna:Genscan chromosome:SGD1:IV:1068723:1071380:-1 // ensembl // 11 // --- /// YDR303C // cdna:known chromosome:SGD1:IV:1068723:1071380:-1 gene:YDR303C // ensembl // 11 // --- --- No cerevisiae_gene 1.358423042289 -1.41192218276047 -1.17191784844395 -1.55902202156079 1.30806774121355 Max fold change below threshold 4 1.55902202156079 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778672_at YOL129W.S1 Vacuolar membrane protein of unknown function involved in vacuolar protein sorting; also detected in the mitochondria 1.55879275355464 3801.23791503906 3130.96936035156 VPS68 6623 // protein-vacuolar targeting // inferred from mutant phenotype 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 3314.73168945313 3896.58374023438 3705.89208984375 2947.20703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL129W /GEN=VPS68 /DB_XREF=GI:6324443 /SEG=NC_001147:+77559,78113 /DEF=Vps68p /NOTE=go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 12134085] --- --- --- --- --- S0005489 // span:25-47,57-79,113-135,148-170 // numtm:4 S0005489 // VPS68 SGDID:S0005489, Chr XV from 77559-78113, Verified ORF // sgd // 11 // --- /// YOL129W // cdna:known chromosome:SGD1:XV:77559:78113:1 gene:YOL129W // ensembl // 11 // --- --- No cerevisiae_gene -1.55879275355464 1.17553518815191 -1.02505527064477 1.11800665545125 -1.12470269455324 Max fold change below threshold 4 1.55879275355464 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771731_at YLR436C.S1 Non-essential protein of unknown function 1.55849947258293 430.284225463867 617.612243652344 ECM30 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 565.463684082031 497.742736816406 362.825714111328 669.760803222656 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR436C /GEN=ECM30 /DB_XREF=GI:6323468 /SEG=NC_001144:-1007417,1011241 /DEF=Non-essential protein of unknown function /NOTE=Ecm30p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584] --- --- --- --- --- --- S0004428 // ECM30 SGDID:S0004428, Chr XII from 1011241-1007417, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018151 // cdna:Genscan chromosome:SGD1:XII:1007417:1011241:-1 // ensembl // 11 // --- /// GENEFINDER00000024750 // cdna:GeneFinder chromosome:SGD1:XII:1007417:1011241:-1 // ensembl // 11 // --- /// YLR436C // cdna:known chromosome:SGD1:XII:1007417:1011241:-1 gene:YLR436C // ensembl // 11 // --- --- No cerevisiae_gene -1.43640027854939 -1.13605612348815 -1.11864608975859 -1.55849947258293 1.18444530051464 Max fold change below threshold 4 1.55849947258293 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771908_at YNL160W.S1 Cell wall-related secretory glycoprotein; induced by nutrient deprivation-associated growth arrest and upon entry into stationary phase; may be involved in adaptation prior to stationary phase entry; has similarity to Sps100p 1.55818095925519 8287.64575195313 7283.93774414063 YGP1 6950 // response to stress // inferred from expression pattern /// 7584 // response to nutrients // inferred from expression pattern 9277 // cell wall (sensu Fungi) // traceable author statement --- 8774.1748046875 10561.0234375 6014.26806640625 5793.70068359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL160W /GEN=YGP1 /DB_XREF=GI:6324169 /SEG=NC_001146:+336545,337609 /DEF=may be involved in cellular adaptations prior to stationary phase /NOTE=Ygp1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence TAS] [pmid 11136466]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to nutrients [goid GO:0007584] [evidence IEP] [pmid 8139573]; go_process: response to stress [goid GO:0006950] [evidence IEP] [pmid 8139573] --- --- --- --- --- --- S0005104 // YGP1 SGDID:S0005104, Chr XIV from 336545-337609, Verified ORF // sgd // 11 // --- /// GENSCAN00000019911 // cdna:Genscan chromosome:SGD1:XIV:336545:337609:1 // ensembl // 11 // --- /// GENEFINDER00000020412 // cdna:GeneFinder chromosome:SGD1:XIV:336545:337609:1 // ensembl // 11 // --- /// YNL160W // cdna:known chromosome:SGD1:XIV:336545:337609:1 gene:YNL160W // ensembl // 11 // --- --- No cerevisiae_gene -1.55818095925519 1.20364862480947 -1.3475884633083 -1.45889320326395 -1.51443356912339 Max fold change below threshold 4 1.55818095925519 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779403_at YER158C.S1 Protein of unknown function, has similarity to Afr1p; potentially phosphorylated by Cdc28p 1.55814187421167 1410.29650878906 1031.59030151367 --- --- --- --- 982.352478027344 1289.94848632813 1530.64453125 1080.828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER158C /GEN=COG3 /DB_XREF=GI:6321006 /SEG=NC_001137:-488852,490573 /DEF=Protein of unknown function, has similarity to Afr1p; potentially phosphorylated by Cdc28p /NOTE=Yer158cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000960 // YER158C SGDID:S0000960, Chr V from 490573-488852, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016937 // cdna:Genscan chromosome:SGD1:V:488852:490132:-1 // ensembl // 11 // --- /// GENEFINDER00000019753 // cdna:GeneFinder chromosome:SGD1:V:488852:490573:-1 // ensembl // 11 // --- /// YER158C // cdna:known chromosome:SGD1:V:488852:490573:-1 gene:YER158C // ensembl // 11 // --- --- No cerevisiae_gene -1.21492193484551 1.31312183272389 -1.24313176405181 1.55814187421167 1.10024471783326 Max fold change below threshold 4 1.55814187421167 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776370_at YFR031C-A.S1 Protein component of the large (60S) ribosomal subunit, identical to Rpl2Ap and has similarity to E. coli L2 and rat L8 ribosomal proteins; expression is upregulated at low temperatures /// Protein component of the large (60S) ribosomal subunit, identical to Rpl2Bp and has similarity to E. coli L2 and rat L8 ribosomal proteins 1.55813887740102 1764.69165039063 2620.10998535156 RPL2B /// RPL2A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 2677.60498046875 1718.46362304688 1810.91967773438 2562.61499023438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR031C-A /GEN=RPL2A /DB_XREF=GI:14318555 /SEG=NC_001138:-220495,221406 /DEF=Protein component of the large (60S) ribosomal subunit, identical to Rpl2Bp and has similarity to E. coli L2 and rat L8 ribosomal proteins /NOTE=Rpl2ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0002104 // RPL2A SGDID:S0002104, Chr VI from 221406-221403,221255-220495, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018581 // cdna:GeneFinder chromosome:SGD1:VI:220495:221611:-1 // ensembl // 11 // --- /// YFR031C-A // cdna:known chromosome:SGD1:VI:220495:221406:-1 gene:YFR031C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.2819606527303 -1.55813887740102 -1.55621837404072 -1.47858848373589 -1.0448721289279 Max fold change below threshold 4 1.55813887740102 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777232_at YDR317W.S1 Protein of unknown function involved in DNA repair 1.55779177770902 72.2446212768555 111.865703582764 HIM1 6281 // DNA repair // inferred from genetic interaction --- --- 96.6794357299805 77.1151351928711 67.3741073608398 127.051971435547 0.000732421991415322 0.00585938012227416 0.00585938012227416 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR317W /GEN=IPK1 /DB_XREF=GI:6320523 /SEG=NC_001136:+1102177,1103421 /DEF=Hypothetical ORF /NOTE=Ydr317wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002725 // YDR317W SGDID:S0002725, Chr IV from 1102179-1103423, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025347 // cdna:Genscan chromosome:SGD1:IV:1102179:1103423:1 // ensembl // 11 // --- /// YDR317W // cdna:known chromosome:SGD1:IV:1102179:1103423:1 gene:YDR317W // ensembl // 11 // --- --- No cerevisiae_gene 1.55779177770902 -1.25370247342727 1.08723018297002 -1.43496425432679 1.31415714703171 Max fold change below threshold 4 1.55779177770902 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1769906_at YOR042W.S1 Protein containing a CUE domain that binds ubiquitin, which may facilitate intramolecular monoubiquitination; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.55763520251077 2131.20489501953 1586.31726074219 CUE5 --- 5737 // cytoplasm // inferred from direct assay --- 1552.99536132813 1843.40954589844 2419.00024414063 1619.63916015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR042W /GEN=CUE5 /DB_XREF=GI:6324615 /SEG=NC_001147:+408424,409659 /DEF=Protein containing a CUE domain that binds ubiquitin, which may facilitate intramolecular monoubiquitination; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Cue5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005568 // CUE5 SGDID:S0005568, Chr XV from 408424-409659, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017496 // cdna:Genscan chromosome:SGD1:XV:408424:409659:1 // ensembl // 11 // --- /// GENEFINDER00000022593 // cdna:GeneFinder chromosome:SGD1:XV:408424:409659:1 // ensembl // 11 // --- /// YOR042W // cdna:known chromosome:SGD1:XV:408424:409659:1 gene:YOR042W // ensembl // 11 // --- --- No cerevisiae_gene -1.32822186096668 1.18700260915264 1.19562246534348 1.55763520251077 1.04291307011447 Max fold change below threshold 4 1.55763520251077 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775887_at YPL098C.S1 Hypothetical protein 1.55759382085155 1470.69708251953 1726.15759277344 --- --- --- --- 1751.28894042969 1124.35534667969 1817.03881835938 1701.02624511719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL098C /GEN=ATG21 /DB_XREF=GI:6325159 /SEG=NC_001148:-364381,364722 /DEF=Hypothetical ORF /NOTE=Ypl098cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0006019 // span:21-43,58-77 // numtm:2 S0006019 // YPL098C SGDID:S0006019, Chr XVI from 364724-364383, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017115 // cdna:Genscan chromosome:SGD1:XVI:364383:364664:-1 // ensembl // 9 // --- /// YPL098C // cdna:known chromosome:SGD1:XVI:364383:364724:-1 gene:YPL098C // ensembl // 11 // --- --- No cerevisiae_gene -1.09736279101431 -1.55759382085155 1.26929000884463 1.03754370647345 -1.0295484537389 Max fold change below threshold 4 1.55759382085155 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772020_at YKR010C.S1 Nonessential mitochondrial protein of unknown function with sequence similarity to Net1p; identified as a topoisomerase I (Top1p) binding protein; displays synthetic genetic interactions with TOP1 and HPR1 1.55757793060393 344.33610534668 246.47078704834 TOF2 6265 // DNA topological change // inferred from physical interaction 5739 // mitochondrion // inferred from direct assay --- 230.531143188477 359.070220947266 329.601989746094 262.410430908203 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR010C /GEN=TOF2 /DB_XREF=GI:6322862 /SEG=NC_001143:-458567,460882 /DEF=topoisomerase I interacting factor 2 /NOTE=Tof2p; go_component: cell [goid GO:0005623] [evidence TAS] [pmid 10028183]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 10028183]; go_process: DNA topological change [goid GO:0006265] [evidence IPI] [pmid 10028183] --- --- --- --- --- --- S0001718 // TOF2 SGDID:S0001718, Chr XI from 460882-458567, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018426 // cdna:Genscan chromosome:SGD1:XI:458567:460873:-1 // ensembl // 11 // --- /// GENEFINDER00000023113 // cdna:GeneFinder chromosome:SGD1:XI:458567:460873:-1 // ensembl // 11 // --- /// YKR010C // cdna:known chromosome:SGD1:XI:458567:460882:-1 gene:YKR010C // ensembl // 11 // --- --- No cerevisiae_gene -1.22199363674099 1.55757793060393 1.03124888925396 1.42975038073975 1.13828625182179 Max fold change below threshold 4 1.55757793060393 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772512_at YGR133W.S1 Peroxisomal ubiquitin conjugating enzyme required for peroxisomal matrix protein import and peroxisome biogenesis 1.5571126841253 251.596817016602 360.137405395508 PEX4 209 // protein polyubiquitination // traceable author statement /// 6513 // protein monoubiquitination // traceable author statement /// 6625 // protein-peroxisome targeting // inferred from physical interaction /// 7031 // peroxisome organization and biogenesis // traceable author statement /// 16558 // peroxisome matrix protein import // inferred from mutant phenotype 5777 // peroxisome // traceable author statement 4840 // ubiquitin conjugating enzyme activity // traceable author statement 328.050445556641 210.678680419922 292.514953613281 392.224365234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR133W /GEN=PEX4 /DB_XREF=GI:6321572 /SEG=NC_001139:+756899,757450 /DEF=Involved in peroxisome biogenesis /NOTE=Pex4p; go_component: peroxisome [goid GO:0005777] [evidence TAS] [pmid 1326082]; go_function: ubiquitin conjugating enzyme activity [goid GO:0004840] [evidence TAS] [pmid 8982460]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence TAS]; go_process: protein monoubiquitination [goid GO:0006513] [evidence TAS] [pmid 8982460]; go_process: protein polyubiquitination [goid GO:0000209] [evidence TAS] [pmid 8982460] --- --- --- --- --- --- S0003365 // PEX4 SGDID:S0003365, Chr VII from 756901-757452, Verified ORF // sgd // 11 // --- /// GENSCAN00000019443 // cdna:Genscan chromosome:SGD1:VII:756901:757452:1 // ensembl // 11 // --- /// YGR133W // cdna:known chromosome:SGD1:VII:756901:757452:1 gene:YGR133W // ensembl // 11 // --- --- No cerevisiae_gene -1.06254380702698 -1.5571126841253 1.40124527922406 -1.12148265073087 1.19562210796222 Max fold change below threshold 4 1.5571126841253 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774666_at YBR171W.S1 Non-essential subunit of Sec63 complex (Sec63p, Sec62p, Sec66p and Sec72p); with Sec61 complex, Kar2p/BiP and Lhs1p forms a channel competent for SRP-dependent and post-translational SRP-independent protein targeting and import into the ER 1.55693046642616 816.789978027344 1042.86575317383 SEC66 6620 // posttranslational protein-membrane targeting // traceable author statement /// 30447 // filamentous growth // inferred from mutant phenotype 5789 // endoplasmic reticulum membrane // traceable author statement /// 31207 // Sec62/Sec63 complex // inferred from physical interaction 8565 // protein transporter activity // traceable author statement 1003.21173095703 742.83935546875 890.740600585938 1082.51977539063 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR171W /GEN=SEC66 /DB_XREF=GI:6319648 /SEG=NC_001134:+578321,578941 /DEF=glycoprotein complexed with Sec62p and Sec63p in the Sec63 complex, an integral endoplasmic reticulum membrane protein complex required for translocation of presecretory proteins /NOTE=Sec66p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence TAS] [pmid 10564637]; go_function: protein transporter activity [goid GO:0008565] [evidence TAS] [pmid 10564637]; go_process: SRP-dependent cotranslational membrane targeting, translocation [goid GO:0006616] [evidence TAS] [pmid 10564637] --- --- --- --- --- S0000375 // span:28-50 // numtm:1 S0000375 // SEC66 SGDID:S0000375, Chr II from 578359-578979, Verified ORF // sgd // 11 // --- /// GENSCAN00000021278 // cdna:Genscan chromosome:SGD1:II:578359:578979:1 // ensembl // 11 // --- /// YBR171W // cdna:known chromosome:SGD1:II:578359:578979:1 gene:YBR171W // ensembl // 11 // --- --- No cerevisiae_gene 1.55693046642616 -1.35050966749598 1.12371770329194 -1.12626698535703 1.07905414379269 Max fold change below threshold 4 1.55693046642616 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777149_at YER188C-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /// Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /// --- /// Identified by fungal homology and RT-PCR 1.55669185431432 40.6545810699463 35.5248489379883 --- --- --- --- 35.5314407348633 55.3115043640137 25.9976577758789 35.5182571411133 0.000732421991415322 0.00415039015933871 0.00292969006113708 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER188C-A /GEN=FAU1 /DB_XREF=GI:33438788 /SEG=NC_001137:-569603,569902 /DEF=Yer188c-ap /NOTE=go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028709 // span:26-48 // numtm:1 S0028764 // YER188C-A SGDID:S0028764, Chr V from 569902-569603, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YER188C-A // cdna:known chromosome:SGD1:V:569603:569902:-1 gene:YER188C-A // ensembl // 11 // --- YAL069W // ensembl // 1 // Cross Hyb Matching Probes /// YDR543C // ensembl // 1 // Cross Hyb Matching Probes /// YFL063W // ensembl // 1 // Cross Hyb Matching Probes /// YJR162C // ensembl // 1 // Cross Hyb Matching Probes /// YNL337W // ensembl // 1 // Cross Hyb Matching Probes No cerevisiae_gene 1.16368016504419 1.55669185431432 -1.45945725734311 -1.36671699586068 -1.00037117794653 Max fold change below threshold 4 1.55669185431432 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773348_at YBR137W.S1 Hypothetical protein 1.55667090960663 1090.51330566406 792.02099609375 --- --- 5737 // cytoplasm // inferred from direct assay --- 781.111450195313 965.093139648438 1215.93347167969 802.930541992188 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR137W /GEN=MEC1 /DB_XREF=GI:6319613 /SEG=NC_001134:+513000,513539 /DEF=Hypothetical ORF /NOTE=Ybr137wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11266464]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000341 // YBR137W SGDID:S0000341, Chr II from 513038-513577, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021250 // cdna:Genscan chromosome:SGD1:II:513038:513577:1 // ensembl // 11 // --- /// YBR137W // cdna:known chromosome:SGD1:II:513038:513577:1 gene:YBR137W // ensembl // 11 // --- --- No cerevisiae_gene -1.34939418324818 1.23553833375138 1.44780269625941 1.55667090960663 1.02793339131237 Max fold change below threshold 4 1.55667090960663 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773660_at YEL060C.S1 Vacuolar proteinase B (yscB), a serine protease of the subtilisin family; involved in protein degradation in the vacuole and required for full protein degradation during sporulation 1.55635059180338 7141.94165039063 5712.28149414063 PRB1 7039 // vacuolar protein catabolism // inferred from mutant phenotype /// 7039 // vacuolar protein catabolism // traceable author statement /// 9267 // cellular response to starvation // inferred from mutant phenotype /// 30435 // sporulation // inferred from mutant phenotype 324 // vacuole (sensu Fungi) // traceable author statement /// 328 // vacuolar lumen (sensu Fungi) // traceable author statement 4252 // serine-type endopeptidase activity // traceable author statement 6418.013671875 8521.443359375 5762.43994140625 5006.54931640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL060C /GEN=PRB1 /DB_XREF=GI:6320775 /SEG=NC_001137:-40046,41953 /DEF=Vacuolar proteinase B (yscB), a serine protease of the subtilisin family; involved in protein degradation in the vacuole and required for full protein degradation during sporulation /NOTE=Prb1p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence TAS] [pmid 2674123]; go_function: serine-type endopeptidase activity [goid GO:0004252] [evidence TAS] [pmid 1744078]; go_process: cellular response to starvation [goid GO:0009267] [evidence IMP] [pmid 2674123]; go_process: sporulation [goid GO:0030435] [evidence IMP] [pmid 2674123]; go_process: vacuolar protein catabolism [goid GO:0007039] [evidence IMP,TAS] [pmid 2674123] --- --- --- --- --- --- S0000786 // PRB1 SGDID:S0000786, Chr V from 41953-40046, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016755 // cdna:Genscan chromosome:SGD1:V:40046:41953:-1 // ensembl // 11 // --- /// GENEFINDER00000019711 // cdna:GeneFinder chromosome:SGD1:V:40046:41953:-1 // ensembl // 11 // --- /// YEL060C // cdna:known chromosome:SGD1:V:40046:41953:-1 gene:YEL060C // ensembl // 11 // --- --- No cerevisiae_gene -1.55635059180338 1.32773842422892 -1.1294124561533 -1.11376669208439 -1.28192358973544 Max fold change below threshold 4 1.55635059180338 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775293_at YMR146C.S1 Subunit of the core complex of translation initiation factor 3(eIF3), which is essential for translation 1.5562905048762 1672.67846679688 1772.19891357422 TIF34 6413 // translational initiation // inferred from direct assay 5852 // eukaryotic translation initiation factor 3 complex // inferred from physical interaction /// 5852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay 3743 // translation initiation factor activity // inferred from direct assay 1896.34497070313 1511.13696289063 1834.21997070313 1648.05285644531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR146C /GEN=TIF34 /DB_XREF=GI:6323795 /SEG=NC_001145:-557480,558523 /DEF=Subunit of the core complex of translation initiation factor 3(eIF3), which is essential for translation /NOTE=Tif34p; go_component: eukaryotic translation initiation factor 3 complex [goid GO:0005852] [evidence IDA,IPI] [pmid 9671501]; go_function: translation initiation factor activity [goid GO:0003743] [evidence IDA] [pmid 9671501]; go_process: translational initiation [goid GO:0006413] [evidence IDA] [pmid 9671501] --- --- --- --- --- --- S0004754 // TIF34 SGDID:S0004754, Chr XIII from 558523-557480, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018835 // cdna:Genscan chromosome:SGD1:XIII:557480:558523:-1 // ensembl // 11 // --- /// GENEFINDER00000021879 // cdna:GeneFinder chromosome:SGD1:XIII:557480:558523:-1 // ensembl // 11 // --- /// YMR146C // cdna:known chromosome:SGD1:XIII:557480:558523:-1 gene:YMR146C // ensembl // 11 // --- --- No cerevisiae_gene 1.5562905048762 -1.25491270299923 -1.06240843183184 -1.03386998342199 -1.150657858628 Max fold change below threshold 4 1.5562905048762 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770109_at YHL001W.S1 N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl14Bp and has similarity to rat L14 ribosomal protein; rpl14a csh5 double null mutant exhibits synthetic slow growth /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl14Ap and has similarity to rat L14 ribosomal protein 1.55610814463679 1911.17401123047 2744.18054199219 RPL14A /// RPL14B 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3723 // RNA binding // inferred from direct assay /// 3735 // structural constituent of ribosome // traceable author statement 2809.76733398438 2016.71044921875 1805.63757324219 2678.59375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL001W /GEN=RPL14B /DB_XREF=GI:6321786 /SEG=NC_001140:+104271,105085 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl14Ap and has similarity to rat L14 ribosomal protein /NOTE=Rpl14bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 6337137]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0000993 // RPL14B SGDID:S0000993, Chr VIII from 104271-104399,104798-105085, intron sequence removed, Verified ORF // sgd // 10 // --- /// GENEFINDER00000020245 // cdna:GeneFinder chromosome:SGD1:VIII:104271:105085:1 // ensembl // 10 // --- /// YHL001W // cdna:known chromosome:SGD1:VIII:104271:105085:1 gene:YHL001W // ensembl // 10 // --- --- No cerevisiae_gene 1.01962818561472 -1.3932428103761 -1.36430201072256 -1.55610814463679 -1.04897106326197 Max fold change below threshold 4 1.55610814463679 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779840_at YLR398C.S1 Putative RNA helicase, involved in exosome mediated 3' to 5' mRNA degradation and translation inhibition of non-poly(A) mRNAs; forms complex with Ski3p and Ski8p; required for repressing propagation of dsRNA viruses 1.55600311941542 1062.79547119141 1543.18103027344 SKI2 6402 // mRNA catabolism // inferred from mutant phenotype /// 6402 // mRNA catabolism // traceable author statement /// 6445 // regulation of translation // inferred from mutant phenotype /// 6445 // regulation of translation // inferred from genetic interaction /// 43330 // response to exogenous dsRNA // inferred from mutant phenotype 5730 // nucleolus // traceable author statement /// 5737 // cytoplasm // inferred from direct assay 3724 // RNA helicase activity // inferred from sequence similarity /// 30371 // translation repressor activity // traceable author statement 1487.91259765625 956.240112304688 1169.35083007813 1598.44946289063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR398C /GEN=SKI2 /DB_XREF=GI:6323430 /SEG=NC_001144:-915156,919019 /DEF=blocks translation of non-poly(A) mRNAs /NOTE=Ski2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10744028]; go_function: RNA helicase activity [goid GO:0003724] [evidence ISS] [pmid 8321235]; go_function: translation repressor activity [goid GO:0030371] [evidence TAS] [pmid 7739558]; go_process: mRNA catabolism [goid GO:0006402] [evidence IMP] [pmid 9482746]; go_process: mRNA catabolism [goid GO:0006402] [evidence TAS] [pmid 9841679]; go_process: regulation of translation [goid GO:0006445] [evidence IGI,IMP] [pmid 11438647] --- --- --- --- scop // a.3.1.Two-domain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; Two-domain cytochrome c // 2.40000009536743 /// scop // a.4.5.SCF ubiquitin ligase complex WHB domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; SCF ubiquitin ligase complex WHB domain // 0.0810000002384186 --- S0004390 // SKI2 SGDID:S0004390, Chr XII from 919019-915156, reverse complement, Verified ORF // sgd // 11 // --- /// L13469 // Saccharomyces cerevisiae antiviral protein Ski2p (SKI) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000018119 // cdna:Genscan chromosome:SGD1:XII:915156:919019:-1 // ensembl // 11 // --- /// GENEFINDER00000024645 // cdna:GeneFinder chromosome:SGD1:XII:915156:919019:-1 // ensembl // 11 // --- /// YLR398C // cdna:known chromosome:SGD1:XII:915156:919019:-1 gene:YLR398C // ensembl // 11 // --- --- No cerevisiae_gene -1.50711162121718 -1.55600311941542 1.01291469835868 -1.27242616961827 1.07428989136088 Max fold change below threshold 4 1.55600311941542 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774014_at YKR078W.S1 Cytoplasmic protein of unknown function, has similarity to Vps5p; potential Cdc28p substrate 1.55474252794143 154.363307952881 180.24723815918 --- 15031 // protein transport // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay 8565 // protein transporter activity // inferred from sequence similarity 169.999282836914 125.354194641113 183.372421264648 190.495193481445 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR078W /GEN=ECM4 /DB_XREF=GI:6322931 /SEG=NC_001143:+584594,586351 /DEF=Cytoplasmic protein of unknown function, has similarity to Vps5p; potential Cdc28p substrate /NOTE=Ykr078wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein transporter activity [goid GO:0008565] [evidence ISS] [pmid 9175702]; go_process: protein transport [goid GO:0015031] [evidence ISS] [pmid 9175702] --- --- --- --- scop // a.3.1.Two-domain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; Two-domain cytochrome c // 0.519999980926514 --- S0001786 // YKR078W SGDID:S0001786, Chr XI from 584594-586351, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018480 // cdna:Genscan chromosome:SGD1:XI:584594:586351:1 // ensembl // 11 // --- /// GENEFINDER00000022993 // cdna:GeneFinder chromosome:SGD1:XI:584594:586351:1 // ensembl // 11 // --- /// YKR078W // cdna:known chromosome:SGD1:XI:584594:586351:1 gene:YKR078W // ensembl // 11 // --- --- No cerevisiae_gene -1.14957229504553 -1.35615152986 1.55474252794143 1.07866585202341 1.12056468887692 Max fold change below threshold 4 1.55474252794143 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776708_at YGL115W.S1 Protein kinase activator found in a complex containing Snf1p and members of the Sip1p/Sip2p/Gal83p family; activates the Snf1p protein kinase; involved in expression of glucose-repressed genes, sporulation, and peroxisome biogenesis 1.55470442469189 723.543548583984 868.490112304688 SNF4 6357 // regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 7031 // peroxisome organization and biogenesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 30295 // protein kinase activator activity // inferred from genetic interaction 850.684936523438 547.168273925781 899.918823242188 886.295288085938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL115W /GEN=SNF4 /DB_XREF=GI:6321323 /SEG=NC_001139:+292034,293002 /DEF=involved in release from glucose repression, invertase expression, and sporulation /NOTE=Snf4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 2481228]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 2481228]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12562756]; go_function: protein kinase activator activity [goid GO:0030295] [evidence IGI] [pmid 2557546]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence IMP] [pmid 1355328]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IGI] [pmid 2557546] --- --- --- --- --- --- S0003083 // SNF4 SGDID:S0003083, Chr VII from 292036-293004, Verified ORF // sgd // 11 // --- /// GENSCAN00000019264 // cdna:Genscan chromosome:SGD1:VII:292036:293004:1 // ensembl // 11 // --- /// GENEFINDER00000021450 // cdna:GeneFinder chromosome:SGD1:VII:292036:293004:1 // ensembl // 11 // --- /// YGL115W // cdna:known chromosome:SGD1:VII:292036:293004:1 gene:YGL115W // ensembl // 11 // --- --- No cerevisiae_gene -1.28905497166694 -1.55470442469189 1.07002449915775 1.0578755830801 1.0418607994965 Max fold change below threshold 4 1.55470442469189 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773594_at YBR298C.S1 Maltose permease, high-affinity maltose transporter (alpha-glucoside transporter); encoded in the MAL3 complex locus; member of the 12 transmembrane domain superfamily of sugar transporters; functional in genomic reference strain S288C 1.55453284404687 8245.6416015625 6908.66040039063 MAL31 17 // alpha-glucoside transport // inferred from sequence similarity 5624 // membrane fraction // inferred from sequence similarity 5352 // alpha-glucoside:hydrogen symporter activity // inferred from sequence similarity 8321.796875 10487.294921875 6003.98828125 5495.52392578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR298C /GEN=MAL31 /DB_XREF=GI:6319775 /SEG=NC_001134:-802587,804431 /DEF=Part of the complex locus MAL3; functional in S288C; highly homologous to MAL61 from S. cerevisiae, MAL61 from S. carlsbergenesis strains JM1901 and CB11, and MAL1T from strain 4059 /NOTE=Mal31p; go_component: membrane fraction [goid GO:0005624] [evidence ISS] [pmid 2549370]; go_function: alpha-glucoside:hydrogen symporter activity [goid GO:0005352] [evidence ISS] [pmid 2549370]; go_process: alpha-glucoside transport [goid GO:0000017] [evidence ISS] [pmid 2549370] --- --- --- --- --- S0000502 // span:184-206,278-300,365-387,397-419,426-445,460-482,495-517,527-544 // numtm:8 S0000502 // MAL31 SGDID:S0000502, Chr II from 804469-802625, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021377 // cdna:Genscan chromosome:SGD1:II:802625:803485:-1 // ensembl // 11 // --- /// GENEFINDER00000022112 // cdna:GeneFinder chromosome:SGD1:II:802625:804469:-1 // ensembl // 11 // --- /// YBR298C // cdna:known chromosome:SGD1:II:802625:804469:-1 gene:YBR298C // ensembl // 11 // --- --- No cerevisiae_gene -1.55453284404687 1.26022000769816 -1.21581149037965 -1.38604482307008 -1.5142863514723 Max fold change below threshold 4 1.55453284404687 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771646_at SPCC24B10.07.S1 --- 1.55425824788573 --- --- --- --- 11.7960777282715 9.22186183929443 15.5276746749878 7.58952236175537 0.144775390625 0.0952147990465164 0.0676269978284836 0.091064453125 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC24B10.07 /GEN=gad8 /DEF=serinethreonine protein kinase (PMID 12805221) --- --- --- --- --- --- SPCC24B10.07 // |gad8||serine/threonine protein kinase Gad8 |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.42544092256482 -1.27914275163051 -1.44170421358477 1.31634218022935 -1.55425824788573 Max fold change below threshold 4 1.55425824788573 Max fold change below threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771562_at YDR067C.S1 Cytoplasmic protein required for replication of Brome mosaic virus in S. cerevisiae, which is a model system for studying replication of positive-strand RNA viruses in their natural hosts 1.55421788989292 865.099609375 593.323608398438 --- --- 5737 // cytoplasm // inferred from direct assay --- 584.01953125 907.693603515625 822.505615234375 602.627685546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR067C /GEN=RPS13 /DB_XREF=GI:6320272 /SEG=NC_001136:-582787,583461 /DEF=Hypothetical ORF /NOTE=Ydr067cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002474 // YDR067C SGDID:S0002474, Chr IV from 583462-582788, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDR067C // cdna:known chromosome:SGD1:IV:582788:583462:-1 gene:YDR067C // ensembl // 11 // --- --- No cerevisiae_gene -1.16466513054863 1.55421788989292 1.36782192041951 1.40835292524196 1.03186221230829 Max fold change below threshold 4 1.55421788989292 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771450_at YDL089W.S1 Protein of unknown function; interacts with meiotic division protein Csm1p; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery, potential Cdc28p substrate 1.553617438371 200.921577453613 313.694747924805 --- --- --- --- 265.222381591797 170.712799072266 231.130355834961 362.167114257813 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL089W /GEN=RAM1 /DB_XREF=GI:6320114 /SEG=NC_001136:+296820,298274 /DEF=Protein of unknown function; interacts with meiotic division protein Csm1p; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery, potential Cdc28p substrate /NOTE=Ydl089wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002247 // span:142-164,255-277 // numtm:2 S0002247 // YDL089W SGDID:S0002247, Chr IV from 296820-298274, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025034 // cdna:Genscan chromosome:SGD1:IV:297303:298274:1 // ensembl // 11 // --- /// YDL089W // cdna:known chromosome:SGD1:IV:296820:298274:1 gene:YDL089W // ensembl // 11 // --- --- No cerevisiae_gene 1.05567549710861 -1.553617438371 -1.11330432050708 -1.14750129048899 1.36552244227722 Max fold change below threshold 4 1.553617438371 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770781_at SPAC630.08c.S1 --- 1.5535600317814 --- --- --- --- 24.2819118499756 31.3358058929443 37.7234077453613 26.1804809570313 0.129638999700546 0.129638999700546 0.149657994508743 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC630.08c /DEF=C-4 methyl sterol oxidase --- --- --- --- --- --- SPAC630.08c // |erg25||C-4 methylsterol oxidase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.22250267677519 1.29049994442575 1.12248369396377 1.5535600317814 1.07818861705725 Max fold change below threshold 4 1.5535600317814 Max fold change below threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771200_at YOR258W.S1 Member of the third branch of the histidine triad (HIT) superfamily of nucleotide-binding proteins; similar to Aprataxin, a Hint related protein that is mutated in individuals with ataxia with oculomotor apraxia 1.55355299276319 321.060897827148 257.913887023926 HNT3 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 244.857681274414 366.139343261719 275.982452392578 270.970092773438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR258W /GEN=HNT3 /DB_XREF=GI:6324832 /SEG=NC_001147:+811669,812322 /DEF=Member of the third branch of the histidine triad (HIT) superfamily of nucleotide-binding proteins; similar to Aprataxin, a Hint related protein that is mutated in individuals with ataxia with oculomotor apraxia /NOTE=Hnt3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005784 // HNT3 SGDID:S0005784, Chr XV from 811669-812322, Verified ORF // sgd // 11 // --- /// YOR258W // cdna:known chromosome:SGD1:XV:811669:812322:1 gene:YOR258W // ensembl // 11 // --- --- No cerevisiae_gene -1.10206180490565 1.49531491663267 1.55355299276319 1.12711372155518 1.10664321969854 Max fold change below threshold 4 1.55355299276319 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777429_at YIL043C.S1 cytochrome b reductase 1.55321720178544 1218.77557373047 980.979827880859 CBR1 6118 // electron transport // inferred from direct assay 5739 // mitochondrion // inferred from direct assay /// 5792 // microsome // inferred from direct assay 4128 // cytochrome-b5 reductase activity // inferred from direct assay 957.029846191406 951.075927734375 1486.47521972656 1004.92980957031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL043C /GEN=CBR1 /DB_XREF=GI:6322146 /SEG=NC_001141:-274071,275039 /DEF=cytochrome b reductase /NOTE=Cbr1p; go_component: microsome [goid GO:0005792] [evidence IDA] [pmid 14930]; go_function: cytochrome-b5 reductase activity [goid GO:0004128] [evidence IDA] [pmid 14930]; go_process: electron transport [goid GO:0006118] [evidence IDA] [pmid 14930] --- --- --- --- --- S0001305 // span:46-65 // numtm:1 S0001305 // CBR1 SGDID:S0001305, Chr IX from 275039-274071, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016444 // cdna:Genscan chromosome:SGD1:IX:274071:274925:-1 // ensembl // 11 // --- /// GENEFINDER00000019018 // cdna:GeneFinder chromosome:SGD1:IX:274071:275039:-1 // ensembl // 11 // --- /// YIL043C // cdna:known chromosome:SGD1:IX:274071:275039:-1 gene:YIL043C // ensembl // 11 // --- --- No cerevisiae_gene 1.45953670722859 -1.00626019257076 1.04398597013248 1.55321720178544 1.05005064739572 Max fold change below threshold 4 1.55321720178544 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770058_at YOL098C.S1 Putative metalloprotease 1.55314243155863 522.00830078125 505.669998168945 --- 6508 // proteolysis and peptidolysis // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay 4222 // metalloendopeptidase activity // inferred from sequence similarity 468.024566650391 413.07861328125 630.93798828125 543.3154296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL098C /GEN=PKH2 /DB_XREF=GI:6324474 /SEG=NC_001147:-132724,135837 /DEF=Hypothetical ORF /NOTE=Yol098cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005458 // YOL098C SGDID:S0005458, Chr XV from 135837-132724, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017387 // cdna:Genscan chromosome:SGD1:XV:132724:135837:-1 // ensembl // 11 // --- /// GENEFINDER00000022746 // cdna:GeneFinder chromosome:SGD1:XV:132724:135837:-1 // ensembl // 11 // --- /// YOL098C // cdna:known chromosome:SGD1:XV:132724:135837:-1 gene:YOL098C // ensembl // 11 // --- --- No cerevisiae_gene 1.33965357455213 -1.13301573018434 1.55314243155863 1.34808732968189 1.16086946797678 Max fold change below threshold 4 1.55314243155863 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772102_at SPBC21D10.12.S1 --- 1.55278351067523 --- --- --- --- 6.12634468078613 9.5128870010376 7.46344423294067 5.54692029953003 0.014160200022161 0.0805663987994194 0.000732421875 0.21923828125 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21D10.12 /GEN=hob1 /DEF=amphiphysin homolog --- --- --- --- --- --- AF275637 // Schizosaccharomyces pombe Hob1p (hob1) mRNA, complete cds. // gb // 11 // --- /// SPBC21D10.12 // |hob1||amphiphysin homolog|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.25733973459893 1.55278351067523 1.00148592654537 1.21825405226514 -1.10445875368088 Max fold change below threshold 4 1.55278351067523 Max fold change below threshold PPAAPA No 3 0 PAPA 2 2 0 No No 1 < x = 2
1777551_at YNR024W.S1 Hypothetical protein 1.55256002782089 214.245384216309 233.099426269531 --- --- 5634 // nucleus // inferred from direct assay --- 233.726593017578 150.542709350586 277.948059082031 232.472259521484 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR024W /GEN=SNF12 /DB_XREF=GI:6324351 /SEG=NC_001146:+672408,672968 /DEF=Hypothetical ORF /NOTE=Ynr024wp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005307 // YNR024W SGDID:S0005307, Chr XIV from 672409-672969, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020684 // cdna:GeneFinder chromosome:SGD1:XIV:672409:672969:1 // ensembl // 11 // --- /// YNR024W // cdna:known chromosome:SGD1:XIV:672409:672969:1 gene:YNR024W // ensembl // 11 // --- YNR025C // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene 1.19252141960969 -1.55256002782089 1.42056977160642 1.18920168857776 -1.00539562655207 Max fold change below threshold 4 1.55256002782089 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773493_at YBR230C.S1 Hypothetical protein 1.55229420378661 6513.40283203125 5793.5556640625 --- --- 5739 // mitochondrion // inferred from direct assay --- 6851.44384765625 7952.189453125 5074.6162109375 4735.66748046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR230C /GEN=ROT2 /DB_XREF=GI:6319707 /SEG=NC_001134:-679506,680007 /DEF=Hypothetical ORF /NOTE=Ybr230cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000434 // YBR230C SGDID:S0000434, Chr II from 680045-680035,679937-679544, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022409 // cdna:GeneFinder chromosome:SGD1:II:679544:679960:-1 // ensembl // 11 // --- /// YBR230C // cdna:known chromosome:SGD1:II:679544:680045:-1 gene:YBR230C // ensembl // 11 // --- --- No cerevisiae_gene -1.55229420378661 1.16065892532204 -1.19805921633173 -1.3501402988642 -1.44677468929429 Max fold change below threshold 4 1.55229420378661 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776244_at YOR245C.S1 Diacylglycerol acyltransferase, catalyzes the terminal step of triacylglycerol (TAG) formation, acylates diacylglycerol using acyl-CoA as an acyl donor, localized to lipid particles 1.5521968821339 1679.86053466797 1745.38403320313 DGA1 19432 // triacylglycerol biosynthesis // inferred from direct assay /// 19432 // triacylglycerol biosynthesis // inferred from mutant phenotype /// 19915 // lipid storage // inferred from mutant phenotype 5811 // lipid particle // inferred from direct assay 4144 // diacylglycerol O-acyltransferase activity // inferred from sequence similarity /// 4144 // diacylglycerol O-acyltransferase activity // inferred from mutant phenotype 1775.37634277344 1609.291015625 1750.43005371094 1715.39172363281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR245C /GEN=DGA1 /DB_XREF=GI:6324819 /SEG=NC_001147:-794076,795332 /DEF=Diacylglycerol acyltransferase, catalyzes the terminal step of triacylglycerol (TAG) formation, acylates diacylglycerol using acyl-CoA as an acyl donor, localized to lipid particles /NOTE=Dga1p; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 11751830]; go_function: diacylglycerol O-acyltransferase activity [goid GO:0004144] [evidence IMP,ISS] [pmid 11751830]; go_process: lipid storage [goid GO:0019915] [evidence IMP] [pmid 11751830]; go_process: triacylglycerol biosynthesis [goid GO:0019432] [evidence IDA,IMP] [pmid 11751830] --- --- --- --- --- S0005771 // span:70-92 // numtm:1 S0005771 // DGA1 SGDID:S0005771, Chr XV from 795332-794076, reverse complement, Verified ORF // sgd // 11 // --- /// YOR245C // cdna:known chromosome:SGD1:XV:794076:795332:-1 gene:YOR245C // ensembl // 11 // --- --- No cerevisiae_gene -1.5521968821339 -1.10320403552613 1.2007024533957 -1.01425152008194 -1.03496846715198 Max fold change below threshold 4 1.5521968821339 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771880_at YKL149C.S1 RNA lariat debranching enzyme, involved in intron turnover; required for efficient Ty1 transposition 1.55182022072731 292.844207763672 439.702117919922 DBR1 6320 // Ty1 element transposition // inferred from mutant phenotype /// 6322 // Ty3 element transposition // inferred from mutant phenotype /// 6401 // RNA catabolism // inferred from mutant phenotype /// 6401 // RNA catabolism // inferred from direct assay /// 16074 // snoRNA metabolism // inferred from mutant phenotype 5634 // nucleus // inferred from curator 8419 // RNA lariat debranching enzyme activity // inferred from mutant phenotype /// 8419 // RNA lariat debranching enzyme activity // inferred from direct assay 438.293975830078 282.438629150391 303.249786376953 441.110260009766 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL149C /GEN=DBR1 /DB_XREF=GI:6322700 /SEG=NC_001143:-167617,168834 /DEF=RNA lariat debranching enzyme /NOTE=Dbr1p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 1850323]; go_function: RNA lariat debranching enzyme activity [goid GO:0008419] [evidence IDA,IMP] [pmid 1850323]; go_process: RNA catabolism [goid GO:0006401] [evidence IDA,IMP] [pmid 1850323]; go_process: Ty1 element transposition [goid GO:0006320] [evidence IMP] [pmid 10652222]; go_process: Ty3 element transposition [goid GO:0006322] [evidence IMP] [pmid 10652222]; go_process: snoRNA metabolism [goid GO:0016074] [evidence IMP] [pmid 9740128] --- --- --- --- --- --- S0001632 // DBR1 SGDID:S0001632, Chr XI from 168834-167617, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018307 // cdna:Genscan chromosome:SGD1:XI:167617:168834:-1 // ensembl // 11 // --- /// YKL149C // cdna:known chromosome:SGD1:XI:167617:168834:-1 gene:YKL149C // ensembl // 11 // --- --- No cerevisiae_gene -1.04571186922341 -1.55182022072731 1.16797034845454 -1.44532327975084 1.00642555986391 Max fold change below threshold 4 1.55182022072731 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774009_at YJL111W.S1 Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo 1.55177722363357 1426.62408447266 2168.40893554688 CCT7 6457 // protein folding // traceable author statement /// 7010 // cytoskeleton organization and biogenesis // traceable author statement 5737 // cytoplasm // traceable author statement /// 5737 // cytoplasm // inferred from direct assay /// 5832 // chaperonin-containing T-complex // traceable author statement /// 5832 // chaperonin-containing T-complex // inferred from physical interaction /// 5856 // cytoskeleton // traceable author statement 51082 // unfolded protein binding // traceable author statement 2065.06372070313 1330.77331542969 1522.47485351563 2271.75415039063 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL111W /GEN=CCT7 /DB_XREF=GI:6322350 /SEG=NC_001142:+207794,209446 /DEF=Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo /NOTE=Cct7p; go_component: chaperonin-containing T-complex [goid GO:0005832] [evidence TAS] [pmid 8771707]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 8771707]; go_component: cytoskeleton [goid GO:0005856] [evidence TAS] [pmid 8771707]; go_function: chaperone activity [goid GO:0003754] [evidence TAS] [pmid 8771707]; go_process: cytoskeleton organization and biogenesis [goid GO:0007010] [evidence TAS] [pmid 8771707]; go_process: protein folding [goid GO:0006457] [evidence TAS] [pmid 8771707] --- --- --- --- --- --- S0003647 // CCT7 SGDID:S0003647, Chr X from 207794-209446, Verified ORF // sgd // 11 // --- /// GENSCAN00000024051 // cdna:Genscan chromosome:SGD1:X:207794:209446:1 // ensembl // 11 // --- /// GENEFINDER00000024266 // cdna:GeneFinder chromosome:SGD1:X:207794:209446:1 // ensembl // 11 // --- /// YJL111W // cdna:known chromosome:SGD1:X:207794:209446:1 gene:YJL111W // ensembl // 11 // --- --- No cerevisiae_gene -1.00689488106774 -1.55177722363357 -1.00973594963366 -1.35638609461075 1.1000891292677 Max fold change below threshold 4 1.55177722363357 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769510_at YJR139C.S1 Homoserine dehydrogenase (L-homoserine:NADP oxidoreductase), dimeric enzyme that catalyzes the third step in the common pathway for methionine and threonine biosynthesis; enzyme has nucleotide-binding, dimerization and catalytic regions 1.55176932626881 4205.52807617188 2815.67041015625 HOM6 6555 // methionine metabolism // traceable author statement /// 6566 // threonine metabolism // traceable author statement /// 9090 // homoserine biosynthesis // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4412 // homoserine dehydrogenase activity // inferred from sequence similarity /// 4412 // homoserine dehydrogenase activity // inferred from direct assay 2888.60034179688 4482.44140625 3928.61474609375 2742.74047851563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR139C /GEN=HOM6 /DB_XREF=GI:6322599 /SEG=NC_001142:-689360,690439 /DEF=Homoserine dehydrogenase (L-homoserine:NADP oxidoreductase), dimeric enzyme that catalyzes the third step in the common pathway for methionine and threonine biosynthesis; enzyme has nucleotide-binding, dimerization and catalytic regions /NOTE=Hom6p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: homoserine dehydrogenase activity [goid GO:0004412] [evidence IDA] [pmid 11341915]; go_function: homoserine dehydrogenase activity [goid GO:0004412] [evidence ISS] [pmid 8500624]; go_process: homoserine biosynthesis [goid GO:0009090] [evidence TAS]; go_process: methionine metabolism [goid GO:0006555] [evidence TAS] [pmid 1789001]; go_process: threonine metabolism [goid GO:0006566] [evidence TAS] [pmid 1789001] --- --- --- --- --- S0003900 // span:5-27 // numtm:1 S0003900 // HOM6 SGDID:S0003900, Chr X from 690439-689360, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024243 // cdna:Genscan chromosome:SGD1:X:689360:690361:-1 // ensembl // 11 // --- /// GENEFINDER00000024524 // cdna:GeneFinder chromosome:SGD1:X:689360:695068:-1 // ensembl // 11 // --- /// YJR139C // cdna:known chromosome:SGD1:X:689360:690439:-1 gene:YJR139C // ensembl // 11 // --- --- No cerevisiae_gene 1.30619766023618 1.55176932626881 1.10427159834164 1.36004094759953 -1.05318033712041 Max fold change below threshold 4 1.55176932626881 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772709_at YKL138C-A.S1 Component of the DASH complex which is found at kinetochores and regulates spindle assembly; in vitro DASH forms rings on microtubules and promotes microtubule stability 1.55168964734905 103.21346282959 175.39493560791 HSK3 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from mutant phenotype /// 31110 // regulation of microtubule polymerization or depolymerization // inferred from physical interaction /// 31110 // regulation of microtubule polymerization or depolymerization // inferred from direct assay 776 // kinetochore // inferred from physical interaction /// 5819 // spindle // inferred from direct assay /// 42729 // DASH complex // inferred from direct assay /// 42729 // DASH complex // inferred from physical interaction 5515 // protein binding // inferred from direct assay 150.539123535156 97.0162582397461 109.410667419434 200.250747680664 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL138C-A /GEN=CTK1 /DB_XREF=GI:23270398 /SEG=NC_001143:-184808,185017 /DEF=Helper of Ask1 /NOTE=Ykl138c-ap --- --- --- --- --- --- S0028421 // HSK3 SGDID:S0028421, Chr XI from 185017-184808, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YKL138C-A // cdna:known chromosome:SGD1:XI:184808:185017:-1 gene:YKL138C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.15678542656541 -1.55168964734905 1.38503265647192 -1.37590901404571 1.33022395094454 Max fold change below threshold 4 1.55168964734905 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770594_at YDR404C.S1 RNA polymerase II subunit B16; forms two subunit dissociable complex with Rpb4p 1.55125969572889 1574.64923095703 1214.32781982422 RPB7 6366 // transcription from RNA polymerase II promoter // traceable author statement 5665 // DNA-directed RNA polymerase II, core complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 1100.06103515625 1706.48034667969 1442.81811523438 1328.59460449219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR404C /GEN=RPB7 /DB_XREF=GI:6320612 /SEG=NC_001136:-1276642,1277157 /DEF=RNA polymerase II core subunit /NOTE=Rpb7p; go_component: DNA-directed RNA polymerase II, core complex [goid GO:0005665] [evidence TAS] [pmid 9774381]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 9774381]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence TAS] --- --- --- --- --- --- S0002812 // RPB7 SGDID:S0002812, Chr IV from 1277159-1276644, reverse complement, Verified ORF // sgd // 11 // --- /// YDR404C // cdna:known chromosome:SGD1:IV:1276644:1277159:-1 gene:YDR404C // ensembl // 11 // --- --- No cerevisiae_gene 1.47163709400002 1.55125969572889 1.31316155664303 1.31158005703696 1.20774626319118 Max fold change below threshold 4 1.55125969572889 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769655_at YKL167C.S1 Mitochondrial ribosomal protein of the large subunit, not essential for mitochondrial translation 1.55097049775825 1014.53924560547 1599.80828857422 MRP49 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 1569.74865722656 1016.97113037109 1012.10736083984 1629.86791992188 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL167C /GEN=MRP49 /DB_XREF=GI:6322681 /SEG=NC_001143:-133726,134139 /DEF=Mitochondrial ribosomal protein of the large subunit, not essential for mitochondrial translation /NOTE=Mrp49p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0001650 // MRP49 SGDID:S0001650, Chr XI from 134139-133726, reverse complement, Verified ORF // sgd // 11 // --- /// YKL167C // cdna:known chromosome:SGD1:XI:133726:134139:-1 gene:YKL167C // ensembl // 11 // --- --- No cerevisiae_gene -1.02454100982539 -1.54355282106559 1.27562042060967 -1.55097049775825 1.03829865527742 Max fold change below threshold 4 1.55097049775825 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771148_at YDR336W.S1 Hypothetical protein 1.5509202621964 146.341835021973 237.614974975586 --- --- --- --- 224.722869873047 144.896469116211 147.787200927734 250.507080078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR336W /GEN=MSN5 /DB_XREF=GI:6320543 /SEG=NC_001136:+1145082,1146026 /DEF=Hypothetical ORF /NOTE=Ydr336wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002744 // YDR336W SGDID:S0002744, Chr IV from 1145084-1146028, Uncharacterized ORF // sgd // 11 // --- /// YDR336W // cdna:known chromosome:SGD1:IV:1145084:1146028:1 gene:YDR336W // ensembl // 11 // --- --- No cerevisiae_gene -1.4204774734135 -1.5509202621964 1.3145799018132 -1.52058411325439 1.11473781115222 Max fold change below threshold 4 1.5509202621964 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775789_at YDL144C.S1 Hypothetical protein 1.5509118912794 871.325073242188 751.427307128906 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 683.661865234375 682.350830078125 1060.29931640625 819.192749023438 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL144C /GEN=COP1 /DB_XREF=GI:37362628 /SEG=NC_001136:-198663,199733 /DEF=Hypothetical ORF /NOTE=Ydl144cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002303 // YDL144C SGDID:S0002303, Chr IV from 199733-198663, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023965 // cdna:GeneFinder chromosome:SGD1:IV:198663:199733:-1 // ensembl // 11 // --- /// GENSCAN00000024991 // cdna:Genscan chromosome:SGD1:IV:198663:199733:-1 // ensembl // 11 // --- /// YDL144C // cdna:known chromosome:SGD1:IV:198663:199733:-1 gene:YDL144C // ensembl // 11 // --- --- No cerevisiae_gene 1.2260631887037 -1.00192135056991 1.29577436748267 1.5509118912794 1.19824256797269 Max fold change below threshold 4 1.5509118912794 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772384_at YEL058W.S1 Essential N-acetylglucosamine-phosphate mutase, a hexosephosphate mutase involved in the biosynthesis of chitin 1.55089680210796 4314.806640625 2926.10302734375 PCM1 6045 // N-acetylglucosamine biosynthesis // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4610 // phosphoacetylglucosamine mutase activity // inferred from mutant phenotype /// 4610 // phosphoacetylglucosamine mutase activity // inferred from sequence similarity 2941.6044921875 4562.125 4067.48828125 2910.6015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL058W /GEN=PCM1 /DB_XREF=GI:6320777 /SEG=NC_001137:+43252,44925 /DEF=Phosphoacetylglucosamine Mutase /NOTE=Pcm1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: phosphoacetylglucosamine mutase activity [goid GO:0004610] [evidence IMP,ISS] [pmid 8174553]; go_process: N-acetylglucosamine biosynthesis [goid GO:0006045] [evidence TAS] [pmid 9867860] --- --- --- --- --- --- S0000784 // PCM1 SGDID:S0000784, Chr V from 43252-44925, Verified ORF // sgd // 11 // --- /// GENSCAN00000016756 // cdna:Genscan chromosome:SGD1:V:43252:44925:1 // ensembl // 11 // --- /// GENEFINDER00000019600 // cdna:GeneFinder chromosome:SGD1:V:43252:44925:1 // ensembl // 11 // --- /// YEL058W // cdna:known chromosome:SGD1:V:43252:44925:1 gene:YEL058W // ensembl // 11 // --- --- No cerevisiae_gene 1.14625292518466 1.55089680210796 -1.04427105813376 1.38274478844885 -1.01065172577619 Max fold change below threshold 4 1.55089680210796 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777818_at YPR148C.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.55084430621081 3150.39282226563 2246.55456542969 --- --- 5737 // cytoplasm // inferred from direct assay --- 2327.38647460938 3609.4140625 2691.37158203125 2165.72265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR148C /GEN=ASN1 /DB_XREF=GI:6325406 /SEG=NC_001148:-826827,828134 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ypr148cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006352 // YPR148C SGDID:S0006352, Chr XVI from 828136-826829, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017296 // cdna:Genscan chromosome:SGD1:XVI:826829:827434:-1 // ensembl // 11 // --- /// GENEFINDER00000020858 // cdna:GeneFinder chromosome:SGD1:XVI:826829:828136:-1 // ensembl // 11 // --- /// YPR148C // cdna:known chromosome:SGD1:XVI:826829:828136:-1 gene:YPR148C // ensembl // 11 // --- --- No cerevisiae_gene -1.26248424787532 1.55084430621081 -1.13253228610552 1.15639220704974 -1.0746465933174 Max fold change below threshold 4 1.55084430621081 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774850_at YPL011C.S1 TFIID subunit (47 kDa), involved in promoter binding and RNA polymerase II transcription initiation 1.55078343683199 478.154373168945 667.279144287109 TAF3 114 // G1-specific transcription in mitotic cell cycle // inferred from physical interaction /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement 5669 // transcription factor TFIID complex // traceable author statement /// 5669 // transcription factor TFIID complex // inferred from direct assay 16251 // general RNA polymerase II transcription factor activity // traceable author statement 621.260986328125 400.611053466797 555.697692871094 713.297302246094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL011C /GEN=TAF3 /DB_XREF=GI:6325246 /SEG=NC_001148:-533637,534698 /DEF=TFIID subunit (47 kDa), involved in promoter binding and RNA polymerase II transcription initiation /NOTE=Taf3p; go_component: transcription factor TFIID complex [goid GO:0005669] [evidence TAS] [pmid 9118213]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9118213]; go_process: G1-specific transcription in mitotic cell cycle [goid GO:0000114] [evidence IPI] [pmid 9118213]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 9118213] --- --- --- --- --- --- S0005932 // TAF3 SGDID:S0005932, Chr XVI from 534700-533639, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017176 // cdna:Genscan chromosome:SGD1:XVI:533639:534700:-1 // ensembl // 11 // --- /// GENEFINDER00000020892 // cdna:GeneFinder chromosome:SGD1:XVI:533639:534700:-1 // ensembl // 11 // --- /// YPL011C // cdna:known chromosome:SGD1:XVI:533639:534700:-1 gene:YPL011C // ensembl // 11 // --- --- No cerevisiae_gene -1.38173413216864 -1.55078343683199 1.07984956880714 -1.11798374241629 1.14814436757398 Max fold change below threshold 4 1.55078343683199 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777138_at YKL052C.S1 Component of the DASH complex that binds to microtubules and kinetochores and is essential for chromosome segregation; phosphorylated during the cell cycle by cyclin-dependent kinases 1.55063904403951 1987.58166503906 2563.99877929688 ASK1 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from mutant phenotype /// 31110 // regulation of microtubule polymerization or depolymerization // inferred from physical interaction /// 31110 // regulation of microtubule polymerization or depolymerization // inferred from direct assay 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 780 // condensed nuclear chromosome, pericentric region // inferred from direct assay /// 5819 // spindle // inferred from direct assay /// 42729 // DASH complex // inferred from direct assay /// 42729 // DASH complex // inferred from physical interaction 5200 // structural constituent of cytoskeleton // inferred from direct assay 2578.24291992188 1662.69702148438 2312.46630859375 2549.75463867188 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL052C /GEN=ASK1 /DB_XREF=GI:6322799 /SEG=NC_001143:-339313,340191 /DEF=Component of the DASH complex that binds to microtubules and kinetochores and is essential for chromosome segregation; phosphorylated during the cell cycle by cyclin-dependent kinases /NOTE=Ask1p; go_component: DASH complex [goid GO:0042729] [evidence IDA,IPI] [pmid 11799062]; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IDA] [pmid 11756468]; go_component: condensed nuclear chromosome, pericentric region [goid GO:0000780] [evidence IDA] [pmid 11782438]; go_component: spindle [goid GO:0005819] [evidence IDA] [pmid 11756468]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IDA] [pmid 11756468]; go_process: mitotic spindle assembly (sensu Fungi) [goid GO:0030472] [evidence IMP] [pmid 11756468] --- --- --- --- --- --- S0001535 // ASK1 SGDID:S0001535, Chr XI from 340191-339313, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018377 // cdna:Genscan chromosome:SGD1:XI:339313:340191:-1 // ensembl // 11 // --- /// GENEFINDER00000023167 // cdna:GeneFinder chromosome:SGD1:XI:339313:340191:-1 // ensembl // 11 // --- /// YKL052C // cdna:known chromosome:SGD1:XI:339313:340191:-1 gene:YKL052C // ensembl // 11 // --- YKL053W // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene 1.09637049744789 -1.55063904403951 1.0265280480069 -1.11493210099556 -1.01117295006269 Max fold change below threshold 4 1.55063904403951 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774844_at YOR323C.S1 Gamma-glutamyl phosphate reductase, catalyzes the second step in proline biosynthesis 1.55035417832617 1881.20654296875 1381.49560546875 PRO2 6561 // proline biosynthesis // inferred from direct assay /// 6561 // proline biosynthesis // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4350 // glutamate-5-semialdehyde dehydrogenase activity // inferred from direct assay /// 4350 // glutamate-5-semialdehyde dehydrogenase activity // inferred from genetic interaction 1405.32482910156 1583.66186523438 2178.75122070313 1357.66638183594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR323C /GEN=PRO2 /DB_XREF=GI:6324899 /SEG=NC_001147:-921530,922900 /DEF=Gamma-glutamyl phosphate reductase, catalyzes the second step in proline biosynthesis /NOTE=Pro2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: glutamate-5-semialdehyde dehydrogenase activity [goid GO:0004350] [evidence IDA] [pmid 12513997]; go_function: glutamate-5-semialdehyde dehydrogenase activity [goid GO:0004350] [evidence IGI] [pmid 2824433]; go_process: proline biosynthesis [goid GO:0006561] [evidence TAS] [pmid 11084050]; go_process: proline biosynthesis [goid GO:0006561] [evidence IDA] [pmid 12513997] --- --- --- --- --- --- S0005850 // PRO2 SGDID:S0005850, Chr XV from 922900-921530, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017777 // cdna:Genscan chromosome:SGD1:XV:921530:922900:-1 // ensembl // 11 // --- /// GENEFINDER00000022605 // cdna:GeneFinder chromosome:SGD1:XV:921530:922900:-1 // ensembl // 11 // --- /// YOR323C // cdna:known chromosome:SGD1:XV:921530:922900:-1 gene:YOR323C // ensembl // 11 // --- --- No cerevisiae_gene 1.47852028691446 1.12690093595431 1.10981347885037 1.55035417832617 -1.03510320937694 Max fold change below threshold 4 1.55035417832617 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779078_at YNL147W.S1 Component of small nuclear ribonucleoprotein complexes involved in RNA processing, splicing, and decay 1.5501151860733 400.003479003906 539.643737792969 LSM7 398 // nuclear mRNA splicing, via spliceosome // inferred from mutant phenotype /// 398 // nuclear mRNA splicing, via spliceosome // traceable author statement /// 6402 // mRNA catabolism // inferred from mutant phenotype /// 6402 // mRNA catabolism // traceable author statement /// 6402 // mRNA catabolism // inferred from physical interaction 5688 // snRNP U6 // inferred from direct assay /// 5688 // snRNP U6 // traceable author statement /// 5730 // nucleolus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 46540 // U4/U6 x U5 tri-snRNP complex // non-traceable author statement 3723 // RNA binding // traceable author statement 542.439270019531 417.644409179688 382.362548828125 536.848205566406 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL147W /GEN=LSM7 /DB_XREF=GI:6324182 /SEG=NC_001146:+350940,351383 /DEF=Like Sm-G protein /NOTE=Lsm7p; go_component: snRNP U6 [goid GO:0005688] [evidence IDA] [pmid 10747033]; go_function: U6 snRNA binding [goid GO:0017070] [evidence IDA] [pmid 10747033]; go_process: mRNA catabolism [goid GO:0006402] [evidence IMP,IPI] [pmid 10747033]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IMP] [pmid 11333229] --- --- --- --- --- --- S0005091 // LSM7 SGDID:S0005091, Chr XIV from 350940-350957,351078-351383, intron sequence removed, Verified ORF // sgd // 11 // --- /// YNL147W // cdna:known chromosome:SGD1:XIV:350940:351383:1 gene:YNL147W // ensembl // 11 // --- --- No cerevisiae_gene -1.5501151860733 -1.29880649207051 -1.1701837497876 -1.41865167412973 -1.01041460955844 Max fold change below threshold 4 1.5501151860733 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771696_at YOL148C.S1 Subunit of the SAGA transcriptional regulatory complex, involved in maintaining the integrity of the complex 1.55006111244557 391.086822509766 572.757202148438 SPT20 16568 // chromatin modification // traceable author statement /// 16573 // histone acetylation // traceable author statement 124 // SAGA complex // inferred from direct assay /// 46695 // SLIK (SAGA-like) complex // inferred from physical interaction 3712 // transcription cofactor activity // inferred from genetic interaction /// 3712 // transcription cofactor activity // inferred from mutant phenotype /// 3712 // transcription cofactor activity // inferred from physical interaction 534.67529296875 350.851318359375 431.322326660156 610.839111328125 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL148C /GEN=SPT20 /DB_XREF=GI:6324424 /SEG=NC_001147:-45758,47572 /DEF=Subunit of the SAGA transcriptional regulatory complex, involved in maintaining the integrity of the complex /NOTE=Spt20p; go_component: SAGA complex [goid GO:0000124] [evidence IDA] [pmid 9674426]; go_function: transcription cofactor activity [goid GO:0003712] [evidence IGI,IMP,IPI] [pmid 8649430]; go_process: chromatin modification [goid GO:0016568] [evidence TAS] [pmid 10839822]; go_process: histone acetylation [goid GO:0016573] [evidence TAS] [pmid 10839822] --- --- --- --- --- --- S0005508 // SPT20 SGDID:S0005508, Chr XV from 47572-45758, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017352 // cdna:Genscan chromosome:SGD1:XV:45758:47572:-1 // ensembl // 11 // --- /// GENEFINDER00000022648 // cdna:GeneFinder chromosome:SGD1:XV:45758:47572:-1 // ensembl // 11 // --- /// YOL148C // cdna:known chromosome:SGD1:XV:45758:47572:-1 gene:YOL148C // ensembl // 11 // --- --- No cerevisiae_gene -1.55006111244557 -1.5239369641504 1.03526161742077 -1.23961886487278 1.14244873357899 Max fold change below threshold 4 1.55006111244557 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774121_at YBR005W.S1 Protein of the endoplasmic reticulum membrane involved in chitin deposition in the cell wall; overproduction confers resistance to Congo Red 1.54991585514395 1620.82507324219 1048.69375610352 RCR1 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay /// 30176 // integral to endoplasmic reticulum membrane // inferred from sequence similarity --- 1096.59643554688 1699.63220214844 1542.01794433594 1000.79107666016 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR005W /GEN=COQ1 /DB_XREF=GI:6319477 /SEG=NC_001134:+245870,246511 /DEF=Endoplasmic reticulum membrane protein whose overproduction confers resistance to Congo Red /NOTE=Ybr005wp --- --- --- --- --- S0000209 // span:40-62 // numtm:1 S0000209 // RCR1 SGDID:S0000209, Chr II from 245908-246549, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021142 // cdna:Genscan chromosome:SGD1:II:245908:246549:1 // ensembl // 11 // --- /// YBR005W // cdna:known chromosome:SGD1:II:245908:246549:1 gene:YBR005W // ensembl // 11 // --- GENEFINDER00000022185 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.2699679953382 1.54991585514395 1.01479252988706 1.40618544283972 -1.09572962941121 Max fold change below threshold 4 1.54991585514395 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771585_at YOR008C.S1 Sensor-transducer of the stress-activated PKC1-MPK1 kinase pathway involved in maintenance of cell wall integrity; involved in organization of the actin cytoskeleton; secretory pathway Wsc1p is required for the arrest of secretion response 1.54989297977101 861.706665039063 1097.70349121094 SLG1 6897 // endocytosis // inferred from mutant phenotype /// 6970 // response to osmotic stress // inferred from mutant phenotype /// 6970 // response to osmotic stress // inferred from genetic interaction /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 7266 // Rho protein signal transduction // inferred from mutant phenotype /// 7266 // Rho protein signal transduction // inferred from genetic interaction /// 9408 // response to heat // inferred from mutant phenotype /// 30036 // actin cytoskeleton organization and biogenesis // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype 5624 // membrane fraction // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay /// 30478 // actin cap // inferred from direct assay 4888 // transmembrane receptor activity // inferred from genetic interaction /// 4888 // transmembrane receptor activity // inferred from sequence similarity 1041.08801269531 671.716064453125 1051.697265625 1154.31896972656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR008C /GEN=SLG1 /DB_XREF=GI:6324581 /SEG=NC_001147:-341278,342414 /DEF=cell wall integrity and stress response component 1 /NOTE=Slg1p; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IDA] [pmid 10652251]; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 10348843]; go_function: transmembrane receptor activity [goid GO:0004888] [evidence IGI,ISS] [pmid 10430578]; go_process: Rho protein signal transduction [goid GO:0007266] [evidence IGI,IMP] [pmid 10348843]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence IMP] [pmid 10508863]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 10348843]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IMP] [pmid 10508863]; go_process: response to heat [goid GO:0009408] [evidence IMP] [pmid 10348843]; go_process: response to osmotic stress [goid GO:0006970] [evidence IMP] [pmid 10652251] --- --- --- --- --- S0005534 // span:265-287 // numtm:1 S0005534 // SLG1 SGDID:S0005534, Chr XV from 342414-341278, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017473 // cdna:Genscan chromosome:SGD1:XV:341278:342414:-1 // ensembl // 11 // --- /// GENEFINDER00000022679 // cdna:GeneFinder chromosome:SGD1:XV:341278:342414:-1 // ensembl // 11 // --- /// YOR008C // cdna:known chromosome:SGD1:XV:341278:342414:-1 gene:YOR008C // ensembl // 11 // --- --- No cerevisiae_gene -1.2414267379894 -1.54989297977101 1.15775450886213 1.01019054373916 1.10876213696679 Max fold change below threshold 4 1.54989297977101 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778090_at YKR053C.S1 Dihydrosphingosine 1-phosphate phosphatase, membrane protein involved in sphingolipid metabolism; has similarity to Lcb3p 1.54983398466298 126.215393066406 111.455112457275 YSR3 30148 // sphingolipid biosynthesis // traceable author statement 5783 // endoplasmic reticulum // inferred from direct assay 42392 // sphingosine-1-phosphate phosphatase activity // inferred from direct assay 107.883918762207 87.2171630859375 165.213623046875 115.026306152344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR053C /GEN=YSR3 /DB_XREF=GI:6322906 /SEG=NC_001143:-533709,534923 /DEF=Dihydrosphingosine 1-phosphate phosphatase, membrane protein involved in sphingolipid metabolism; has similarity to Lcb3p /NOTE=Ysr3p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 10531356]; go_function: sphingosine-1-phosphate phosphatase activity [goid GO:0042392] [evidence IDA] [pmid 10856228]; go_process: sphingolipid biosynthesis [goid GO:0030148] [evidence TAS] [pmid 10563329] --- --- --- --- --- S0001761 // span:81-103,181-203,216-235,245-264,380-402 // numtm:5 S0001761 // YSR3 SGDID:S0001761, Chr XI from 534923-533709, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018462 // cdna:Genscan chromosome:SGD1:XI:533709:534923:-1 // ensembl // 11 // --- /// YKR053C // cdna:known chromosome:SGD1:XI:533709:534923:-1 gene:YKR053C // ensembl // 11 // --- --- No cerevisiae_gene 1.54983398466298 -1.23695743985511 -1.01563557051352 1.53140175980288 1.06620437477693 Max fold change below threshold 4 1.54983398466298 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776796_at SPAC1565.07c.S1 --- 1.5495744931468 --- --- --- --- 3.1778359413147 4.77441740036011 4.92429351806641 2.44815373420715 0.5 0.366210997104645 0.064453125 0.0561522990465164 A A M M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1565.07c /DEF=TATA binding protein interacting protein (predicted) --- --- --- --- --- --- SPAC1565.07c // |||TATA binding protein interacting protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.31891448693208 1.502411543116 -1.09312385034397 1.5495744931468 -1.29805407924836 Max fold change below threshold 3 1.5495744931468 Max fold change below threshold AAAAMM No 4 0 AAMM 2 0 2 No No x = 1
1773672_at YNL154C.S1 Palmitoylated, plasma membrane-bound casein kinase I isoform; shares redundant functions with Yck1p in morphogenesis, proper septin assembly, endocytic trafficking; provides an essential function overlapping with that of Yck1p 1.54915503704284 1026.86846923828 1353.95281982422 YCK2 902 // cellular morphogenesis // inferred from genetic interaction /// 910 // cytokinesis // inferred from genetic interaction /// 6468 // protein amino acid phosphorylation // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from sequence similarity /// 6897 // endocytosis // inferred from genetic interaction /// 9749 // response to glucose stimulus // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 5937 // mating projection // inferred from direct assay 4681 // casein kinase I activity // inferred from sequence similarity /// 4681 // casein kinase I activity // inferred from mutant phenotype /// 4681 // casein kinase I activity // inferred from direct assay 1280.37145996094 973.725463867188 1080.01147460938 1427.5341796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL154C /GEN=YCK2 /DB_XREF=GI:6324175 /SEG=NC_001146:-343636,345276 /DEF=membrane-bound casein kinase I homolog /NOTE=Yck2p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 10198058]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 8034689]; go_function: casein kinase I activity [goid GO:0004681] [evidence IMP,ISS] [pmid 1729698]; go_process: cellular morphogenesis [goid GO:0000902] [evidence IGI] [pmid 10198058]; go_process: cytokinesis [goid GO:0000910] [evidence IGI] [pmid 10198058]; go_process: endocytosis [goid GO:0006897] [evidence IGI] [pmid 10198058]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IMP,ISS] [pmid 1729698] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 7.0E-43 /// hanks // 2.1.22 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; RSK2C // 1.0E-47 --- --- S0005098 // YCK2 SGDID:S0005098, Chr XIV from 345276-343636, reverse complement, Verified ORF // sgd // 11 // --- /// X60326 // S.cerevisiae CKI1 mRNA for casein kinase-1. // gb // 11 // --- /// GENSCAN00000019914 // cdna:Genscan chromosome:SGD1:XIV:343636:345213:-1 // ensembl // 11 // --- /// GENEFINDER00000020520 // cdna:GeneFinder chromosome:SGD1:XIV:343636:345276:-1 // ensembl // 11 // --- /// YNL154C // cdna:known chromosome:SGD1:XIV:343636:345276:-1 gene:YNL154C // ensembl // 11 // --- --- No cerevisiae_gene 1.54915503704284 -1.31492038307789 -1.07571586086627 -1.18551653390908 1.11493751956253 Max fold change below threshold 4 1.54915503704284 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779690_s_at YHL001W.S1 N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl14Bp and has similarity to rat L14 ribosomal protein; rpl14a csh5 double null mutant exhibits synthetic slow growth /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl14Ap and has similarity to rat L14 ribosomal protein 1.54902566071887 4405.32238769531 5380.12060546875 RPL14A /// RPL14B 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3723 // RNA binding // inferred from direct assay /// 3735 // structural constituent of ribosome // traceable author statement 5969.84619140625 4956.70849609375 3853.93627929688 4790.39501953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL001W /GEN=RPL14B /DB_XREF=GI:6321786 /SEG=NC_001140:+104271,105085 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl14Ap and has similarity to rat L14 ribosomal protein /NOTE=Rpl14bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 6337137]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0000993 // RPL14B SGDID:S0000993, Chr VIII from 104271-104399,104798-105085, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0001489 // RPL14A SGDID:S0001489, Chr XI from 431549-431677,432076-432363, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020245 // cdna:GeneFinder chromosome:SGD1:VIII:104271:105085:1 // ensembl // 11 // --- /// GENEFINDER00000022976 // cdna:GeneFinder chromosome:SGD1:XI:431549:432363:1 // ensembl // 11 // --- /// YHL001W // cdna:known chromosome:SGD1:VIII:104271:105085:1 gene:YHL001W // ensembl // 11 // --- /// YKL006W // cdna:known chromosome:SGD1:XI:431549:432363:1 gene:YKL006W // ensembl // 11 // --- --- No cerevisiae_gene -1.00991257319262 -1.20439727212341 -1.50867064113084 -1.54902566071887 -1.24621167295519 Max fold change below threshold 4 1.54902566071887 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776787_at YEL037C.S1 Protein with ubiquitin-like N terminus, recognizes and binds damaged DNA (with Rad4p) during nucleotide excision repair; regulates Rad4p levels, subunit of Nuclear Excision Repair Factor 2 (NEF2); homolog of human HR23A and HR23B proteins 1.54889754699944 2023.72607421875 1489.99615478516 RAD23 715 // nucleotide-excision repair, DNA damage recognition // traceable author statement /// 30433 // ER-associated protein catabolism // inferred from mutant phenotype /// 42177 // negative regulation of protein catabolism // traceable author statement 108 // repairosome // inferred from direct assay /// 111 // nucleotide excision repair factor 2 complex // inferred from direct assay /// 502 // proteasome complex (sensu Eukaryota) // inferred from physical interaction /// 502 // proteasome complex (sensu Eukaryota) // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from direct assay 3684 // damaged DNA binding // inferred from direct assay 1427.97351074219 1835.66748046875 2211.78466796875 1552.01879882813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL037C /GEN=RAD23 /DB_XREF=GI:6320798 /SEG=NC_001137:-81407,82603 /DEF=Protein with ubiquitin-like N terminus, recognizes and binds damaged DNA (with Rad4p) during nucleotide excision repair; regulates Rad4p levels, subunit of Nuclear Excision Repair Factor 2 (NEF2); homolog of human HR23A and HR23B proteins /NOTE=Rad23p; go_component: nucleotide excision repair factor 2 complex [goid GO:0000111] [evidence IDA] [pmid 7768886]; go_component: repairosome [goid GO:0000108] [evidence IDA] [pmid 9852079]; go_function: damaged DNA binding [goid GO:0003684] [evidence IDA] [pmid 9837874]; go_process: negative regulation of protein catabolism [goid GO:0042177] [evidence TAS] [pmid 11804604]; go_process: nucleotide-excision repair, DNA damage recognition [goid GO:0000715] [evidence TAS] [pmid 10915862] --- --- --- --- scop // a.2.7.Seryl-tRNA synthetase (SerRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) // 7.59999990463257 /// scop // a.2.7.Seryl-tRNA synthetase (SerRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) // 7.80000019073486 --- S0000763 // RAD23 SGDID:S0000763, Chr V from 82603-81407, reverse complement, Verified ORF // sgd // 11 // --- /// S66117 // RAD23 [Saccharomyces cerevisiae, mRNA, 1601 nt]. // gb // 10 // --- /// GENSCAN00000016773 // cdna:Genscan chromosome:SGD1:V:81407:82603:-1 // ensembl // 11 // --- /// GENEFINDER00000019672 // cdna:GeneFinder chromosome:SGD1:V:81407:82603:-1 // ensembl // 11 // --- /// YEL037C // cdna:known chromosome:SGD1:V:81407:82603:-1 gene:YEL037C // ensembl // 11 // --- --- No cerevisiae_gene 1.30645080906849 1.28550527489454 -1.25661708214596 1.54889754699944 1.08686805963331 Max fold change below threshold 4 1.54889754699944 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770209_at YHR024C.S1 Larger subunit of the mitochondrial processing protease, essential processing enzyme that cleaves the N-terminal targeting sequences from mitochondrially imported proteins 1.54885901055606 728.5244140625 767.199249267578 MAS2 6627 // mitochondrial protein processing // inferred from mutant phenotype 17087 // mitochondrial processing peptidase complex // inferred from direct assay 4240 // mitochondrial processing peptidase activity // inferred from direct assay 669.590209960938 524.505187988281 932.543640136719 864.808288574219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR024C /GEN=MAS2 /DB_XREF=GI:6321813 /SEG=NC_001140:-157736,159184 /DEF=53 kDa subunit of the mitochondrial processing protease /NOTE=Mas2p; go_component: mitochondrial processing peptidase complex [goid GO:0017087] [evidence IDA] [pmid 2905264]; go_function: mitochondrial processing peptidase activity [goid GO:0004240] [evidence IDA] [pmid 3061808]; go_process: mitochondrial processing [goid GO:0006627] [evidence IMP] [pmid 3061808] --- --- --- --- --- --- S0001066 // MAS2 SGDID:S0001066, Chr VIII from 159184-157736, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016572 // cdna:Genscan chromosome:SGD1:VIII:157736:159184:-1 // ensembl // 11 // --- /// GENEFINDER00000020132 // cdna:GeneFinder chromosome:SGD1:VIII:157736:159184:-1 // ensembl // 11 // --- /// YHR024C // cdna:known chromosome:SGD1:VIII:157736:159184:-1 gene:YHR024C // ensembl // 11 // --- --- No cerevisiae_gene 1.54885901055606 -1.27661313042322 1.54314280594091 1.39270799701674 1.29154858555156 Max fold change below threshold 4 1.54885901055606 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772638_at YLR344W.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl26Bp and has similarity to E. coli L24 and rat L26 ribosomal proteins; binds to 5.8S rRNA 1.54866704562556 2777.16564941406 3689.33984375 RPL26A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // inferred from direct assay 3723 // RNA binding // inferred from direct assay /// 3735 // structural constituent of ribosome // traceable author statement 3944.29541015625 2546.89697265625 3007.43432617188 3434.38427734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR344W /GEN=RPL26A /DB_XREF=GI:6323376 /SEG=NC_001144:+819312,820142 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl26Bp and has similarity to E. coli L24 and rat L26 ribosomal proteins; binds to 5.8S rRNA /NOTE=Rpl26ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 6337137]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004336 // RPL26A SGDID:S0004336, Chr XII from 819312-819330,819778-820142, intron sequence removed, Verified ORF // sgd // 11 // --- /// YLR344W // cdna:known chromosome:SGD1:XII:819312:820142:1 gene:YLR344W // ensembl // 11 // --- GENEFINDER00000024686 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 1.18005074823126 -1.54866704562556 -1.42507018472208 -1.31151505980744 -1.1484723582554 Max fold change below threshold 4 1.54866704562556 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
RPTR-Sc-U43284-1_s_at AFFX-Sc-U43284-1 --- 1.54807173379029 --- --- --- --- 1.17151415348053 1.03496670722961 1.44731569290161 0.933981716632843 0.850341975688934 0.962401986122131 0.932372987270355 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL U43284 /FEA=CDS /DB_XREF=AAC53659.1 GI:1289375 /PROD=green fluorescent protein, S65T variant /GEN=gfp --- --- --- --- --- --- AFFX-Sc-U43284-1 // --- // affx // --- // --- --- No No 1.18679345945249 -1.13193414367543 -1.54807173379029 1.235423139022 -1.25432236265184 Max fold change below threshold 0 1.54807173379029 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777860_at YJL170C.S1 Protein that regulates signaling from a G protein beta subunit Ste4p and its relocalization within the cell; specific to a-cells and induced by alpha-factor 1.54786276854152 54.499454498291 58.5376892089844 ASG7 747 // conjugation with cellular fusion // inferred from expression pattern 5886 // plasma membrane // inferred from direct assay --- 55.7711410522461 58.2612609863281 50.7376480102539 61.3042373657227 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL170C /GEN=ASG7 /DB_XREF=GI:6322291 /SEG=NC_001142:-101144,101695 /DEF=an a-specific gene that is induced to a higher expression level by alpha factor /NOTE=Asg7p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 11073983]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IEP] [pmid 10568744] --- --- --- --- --- S0003706 // span:21-43,157-179 // numtm:2 S0003706 // ASG7 SGDID:S0003706, Chr X from 101695-101144, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024009 // cdna:Genscan chromosome:SGD1:X:101144:101659:-1 // ensembl // 10 // --- /// GENEFINDER00000024466 // cdna:GeneFinder chromosome:SGD1:X:101144:101659:-1 // ensembl // 10 // --- /// YJL170C // cdna:known chromosome:SGD1:X:101144:101695:-1 gene:YJL170C // ensembl // 11 // --- --- No cerevisiae_gene 1.4930565995922 1.0446488970299 -1.54786276854152 -1.09920627461831 1.09921074249303 Max fold change below threshold 4 1.54786276854152 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776216_at YDR204W.S1 Protein with a role in ubiquinone (Coenzyme Q) biosynthesis, possibly functioning in stabilization of Coq7p; located on the matrix face of the mitochondrial inner membrane; component of a mitochondrial ubiquinone-synthesizing complex 1.54763847108554 1257.76837158203 1455.67407226563 COQ4 6743 // ubiquinone metabolism // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay --- 1402.68811035156 1054.73706054688 1460.79968261719 1508.66003417969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR204W /GEN=COQ4 /DB_XREF=GI:6320410 /SEG=NC_001136:+858130,859137 /DEF=Protein with a role in ubiquinone (Coenzyme Q) biosynthesis, possibly functioning in stabilization of Coq7p; located on the matrix face of the mitochondrial inner membrane /NOTE=Coq4p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 11469793]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ubiquinone metabolism [goid GO:0006743] [evidence IMP] [pmid 9266513] --- --- --- --- --- --- S0002612 // COQ4 SGDID:S0002612, Chr IV from 858132-859139, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023794 // cdna:GeneFinder chromosome:SGD1:IV:858216:859139:1 // ensembl // 11 // --- /// GENSCAN00000025252 // cdna:Genscan chromosome:SGD1:IV:858216:859139:1 // ensembl // 11 // --- /// YDR204W // cdna:known chromosome:SGD1:IV:858132:859139:1 gene:YDR204W // ensembl // 11 // --- --- No cerevisiae_gene -1.54763847108554 -1.32989364157194 1.27387033528762 1.04142871949707 1.07554917094262 Max fold change below threshold 4 1.54763847108554 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770414_at YJL166W.S1 Subunit 8 of ubiquinol cytochrome-c reductase complex, which is a component of the mitochondrial inner membrane electron transport chain; oriented facing the intermembrane space; expression is regulated by Abf1p and Cpf1p 1.54691557266083 5450.67138671875 4225.33923339844 QCR8 6122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from mutant phenotype 5750 // respiratory chain complex III (sensu Eukaryota) // inferred from direct assay 8121 // ubiquinol-cytochrome-c reductase activity // inferred from direct assay 4980.99072265625 7182.439453125 3718.9033203125 3469.68774414063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL166W /GEN=QCR8 /DB_XREF=GI:6322295 /SEG=NC_001142:+106427,106711 /DEF=Ubiquinol cytochrome-c reductase subunit 8 (11 kDa protein) /NOTE=Qcr8p; go_component: respiratory chain complex III (sensu Eukarya) [goid GO:0005750] [evidence IDA] [pmid 10873857]; go_function: ubiquinol-cytochrome-c reductase activity [goid GO:0008121] [evidence IDA] [pmid 8394810]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 8394810]; go_process: mitochondrial electron transport, ubiquinol to cytochrome c [goid GO:0006122] [evidence IMP] [pmid 8394810] --- --- --- --- --- S0003702 // span:56-70 // numtm:1 S0003702 // QCR8 SGDID:S0003702, Chr X from 106427-106711, Verified ORF // sgd // 10 // --- /// GENEFINDER00000024282 // cdna:GeneFinder chromosome:SGD1:X:106427:106711:1 // ensembl // 10 // --- /// YJL166W // cdna:known chromosome:SGD1:X:106427:106711:1 gene:YJL166W // ensembl // 10 // --- --- No cerevisiae_gene -1.4180719051148 1.44197005235432 -1.54691557266083 -1.33937085577092 -1.43557319561906 Max fold change below threshold 4 1.54691557266083 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777334_at YKL141W.S1 Cytochrome b subunit of succinate dehydrogenase (Sdh1p, Sdh2p, Sdh3p, Sdh4p), which couples the oxidation of succinate to the transfer of electrons to ubiquinone 1.54688717464256 4767.0791015625 3242.53649902344 SDH3 6099 // tricarboxylic acid cycle // traceable author statement /// 6121 // mitochondrial electron transport, succinate to ubiquinone // traceable author statement 5749 // respiratory chain complex II (sensu Eukaryota) // traceable author statement 8177 // succinate dehydrogenase (ubiquinone) activity // traceable author statement /// 8177 // succinate dehydrogenase (ubiquinone) activity // inferred from mutant phenotype 3542.83764648438 5480.3701171875 4053.7880859375 2942.2353515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL141W /GEN=SDH3 /DB_XREF=GI:6322708 /SEG=NC_001143:+179672,180268 /DEF=Yeast succinate dehydrogenase (SDH) is a tetramer of non-equivalent subunits--Sdh1p, Sdh2p, Sdh3p, Sdh4p--that couples the oxidation of succinate to the transfer of electrons to ubiquinone. /NOTE=Sdh3p; go_component: respiratory chain complex II (sensu Eukarya) [goid GO:0005749] [evidence TAS] [pmid 9929002]; go_function: succinate dehydrogenase (ubiquinone) activity [goid GO:0008177] [evidence IMP,TAS] [pmid 9929002]; go_process: mitochondrial electron transport, succinate to ubiquinone [goid GO:0006121] [evidence TAS] [pmid 9929002]; go_process: tricarboxylic acid cycle [goid GO:0006099] [evidence TAS] [pmid 9175438] --- --- --- --- --- S0001624 // span:100-122,143-165,180-197 // numtm:3 S0001624 // SDH3 SGDID:S0001624, Chr XI from 179672-180268, Verified ORF // sgd // 11 // --- /// YKL141W // cdna:known chromosome:SGD1:XI:179672:180268:1 gene:YKL141W // ensembl // 11 // --- --- No cerevisiae_gene -1.32692489868473 1.54688717464256 -1.11075005805782 1.1442206757513 -1.20413128902245 Max fold change below threshold 4 1.54688717464256 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774723_at YDR330W.S1 UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p 1.54683869014766 1166.74743652344 1565.90942382813 UBX5 6511 // ubiquitin-dependent protein catabolism // inferred from expression pattern 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1519.51098632813 1068.38415527344 1265.11071777344 1612.30786132813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR330W /GEN=PEX3 /DB_XREF=GI:6320537 /SEG=NC_001136:+1127863,1129365 /DEF=Hypothetical ORF /NOTE=Ydr330wp --- --- --- --- --- --- S0002738 // UBX5 SGDID:S0002738, Chr IV from 1127865-1129367, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023429 // cdna:GeneFinder chromosome:SGD1:IV:1127865:1129367:1 // ensembl // 11 // --- /// GENSCAN00000025359 // cdna:Genscan chromosome:SGD1:IV:1127892:1129367:1 // ensembl // 11 // --- /// YDR330W // cdna:known chromosome:SGD1:IV:1127865:1129367:1 gene:YDR330W // ensembl // 11 // --- --- No cerevisiae_gene -1.54683869014766 -1.4222515177036 1.1570881327627 -1.20108933153489 1.06107022314083 Max fold change below threshold 4 1.54683869014766 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778218_at YLR327C.S1 Hypothetical protein 1.54664391031581 8579.17309570313 6185.37939453125 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 7240.423828125 11198.357421875 5959.98876953125 5130.3349609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR327C /GEN=RPL38 /DB_XREF=GI:6323359 /SEG=NC_001144:-783127,783387 /DEF=Hypothetical ORF /NOTE=Ylr327cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004319 // YLR327C SGDID:S0004319, Chr XII from 783387-783127, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YLR327C // cdna:known chromosome:SGD1:XII:783127:783387:-1 gene:YLR327C // ensembl // 11 // --- --- No cerevisiae_gene -1.25676712997512 1.54664391031581 -1.1728222404558 -1.21483850190115 -1.41129651051126 Max fold change below threshold 4 1.54664391031581 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771685_at YLR077W.S1 The authentic, non-tagged protein was localized to the mitochondria 1.54656109647997 363.080169677734 403.577819824219 --- --- 5739 // mitochondrion // inferred from direct assay --- 365.489532470703 309.106140136719 417.05419921875 441.666107177734 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR077W /GEN=RPL10 /DB_XREF=GI:6323106 /SEG=NC_001144:+283873,285624 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ylr077wp --- --- --- --- --- S0004067 // span:83-105 // numtm:1 S0004067 // FMP25 SGDID:S0004067, Chr XII from 283873-285624, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000024891 // cdna:GeneFinder chromosome:SGD1:XII:283873:285624:1 // ensembl // 11 // --- /// GENSCAN00000017877 // cdna:Genscan chromosome:SGD1:XII:284104:285624:1 // ensembl // 11 // --- /// YLR077W // cdna:known chromosome:SGD1:XII:283873:285624:1 gene:YLR077W // ensembl // 11 // --- --- No cerevisiae_gene 1.54656109647997 -1.18240786905445 1.30166016204755 1.14108384007463 1.20842341008258 Max fold change below threshold 4 1.54656109647997 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779767_at YBR176W.S1 Ketopantoate hydroxymethyltransferase, required for pantothenic acid biosynthesis, converts 2-oxoisovalerate into 2-dehydropantoate 1.5457071512208 219.546676635742 310.474182128906 ECM31 15940 // pantothenate biosynthesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 3864 // 3-methyl-2-oxobutanoate hydroxymethyltransferase activity // inferred from mutant phenotype /// 3864 // 3-methyl-2-oxobutanoate hydroxymethyltransferase activity // inferred from sequence similarity 297.007690429688 192.150039672852 246.943313598633 323.940673828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR176W /GEN=ECM31 /DB_XREF=GI:6319653 /SEG=NC_001134:+583677,584615 /DEF=Ketopantoate hydroxymethyltransferase, required for pantothenic acid biosynthesis, converts 2-oxoisovalerate into 2-dehydropantoate /NOTE=Ecm31p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [goid GO:0003864] [evidence IMP,ISS] [pmid 11154694]; go_process: pantothenate biosynthesis [goid GO:0015940] [evidence IMP] [pmid 11154694] --- --- --- --- --- --- S0000380 // ECM31 SGDID:S0000380, Chr II from 583715-584653, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022257 // cdna:GeneFinder chromosome:SGD1:II:583841:584653:1 // ensembl // 11 // --- /// GENSCAN00000021282 // cdna:Genscan chromosome:SGD1:II:584033:584653:1 // ensembl // 11 // --- /// YBR176W // cdna:known chromosome:SGD1:II:583715:584653:1 gene:YBR176W // ensembl // 11 // --- --- No cerevisiae_gene 1.18269804984368 -1.5457071512208 1.27311847048626 -1.20273631264391 1.0906810977166 Max fold change below threshold 4 1.5457071512208 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771509_at YGL055W.S1 Fatty acid desaturase, required for monounsaturated fatty acid synthesis and for normal distribution of mitochondria 1.54566871558898 6652.57055664063 4700.75842285156 OLE1 1 // mitochondrion inheritance // traceable author statement /// 6636 // fatty acid desaturation // inferred from mutant phenotype /// 6636 // fatty acid desaturation // inferred from sequence similarity 5789 // endoplasmic reticulum membrane // traceable author statement 4768 // stearoyl-CoA 9-desaturase activity // inferred from mutant phenotype /// 4768 // stearoyl-CoA 9-desaturase activity // inferred from sequence similarity 5332.21435546875 8241.8369140625 5063.30419921875 4069.30249023438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL055W /GEN=OLE1 /DB_XREF=GI:6321383 /SEG=NC_001139:+398629,400161 /DEF=Fatty acid desaturase, required for monounsaturated fatty acid synthesis and for normal distribution of mitochondria /NOTE=Ole1p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence TAS] [pmid 8530368]; go_function: stearoyl-CoA 9-desaturase activity [goid GO:0004768] [evidence IMP,ISS] [pmid 1978720]; go_process: fatty acid desaturation [goid GO:0006636] [evidence IMP,ISS] [pmid 1978720]; go_process: mitochondrion inheritance [goid GO:0000001] [evidence TAS] [pmid 9891785] --- --- --- --- --- S0003023 // span:112-131,141-163,255-277,287-309 // numtm:4 S0003023 // OLE1 SGDID:S0003023, Chr VII from 398631-400163, Verified ORF // sgd // 11 // --- /// GENSCAN00000019303 // cdna:Genscan chromosome:SGD1:VII:398631:400163:1 // ensembl // 11 // --- /// GENEFINDER00000021568 // cdna:GeneFinder chromosome:SGD1:VII:398631:400163:1 // ensembl // 11 // --- /// YGL055W // cdna:known chromosome:SGD1:VII:398631:400163:1 gene:YGL055W // ensembl // 11 // --- --- No cerevisiae_gene -1.13755316341942 1.54566871558898 -1.12724275670756 -1.05310961887131 -1.31035094300931 Max fold change below threshold 4 1.54566871558898 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775399_at YBR068C.S1 High-affinity leucine permease, functions as a branched-chain amino acid permease involved in the uptake of leucine, isoleucine and valine; contains 12 predicted transmembrane domains 1.54550328324845 2487.74865722656 1902.63842773438 BAP2 6865 // amino acid transport // inferred from direct assay 5886 // plasma membrane // inferred from sequence similarity 15171 // amino acid transporter activity // inferred from direct assay 1922.1923828125 2349.48364257813 2626.013671875 1883.08447265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR068C /GEN=BAP2 /DB_XREF=GI:6319542 /SEG=NC_001134:-373821,375650 /DEF=contains 12 predicted transmembrane domains /NOTE=Bap2p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 10654085]; go_function: amino acid transporter activity [goid GO:0015171] [evidence IDA] [pmid 10654085]; go_process: amino acid transport [goid GO:0006865] [evidence IDA] [pmid 10654085] --- --- --- --- --- S0000272 // span:99-116,126-148,161-183,211-228,235-257,289-311,332-349,378-400,428-447,457-479,500-522,537-556 // numtm:12 S0000272 // BAP2 SGDID:S0000272, Chr II from 375687-373858, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021193 // cdna:Genscan chromosome:SGD1:II:373858:375687:-1 // ensembl // 11 // --- /// GENEFINDER00000022272 // cdna:GeneFinder chromosome:SGD1:II:373858:375687:-1 // ensembl // 11 // --- /// YBR068C // cdna:known chromosome:SGD1:II:373858:375687:-1 gene:YBR068C // ensembl // 11 // --- --- No cerevisiae_gene 1.54550328324845 1.22229370149747 -1.15520513206699 1.36615548753382 -1.02076800628125 Max fold change below threshold 4 1.54550328324845 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772365_at YLR108C.S1 Hypothetical protein 1.54547332656974 1548.43133544922 2103.2509765625 --- --- 5634 // nucleus // inferred from direct assay --- 2150.54443359375 1607.4091796875 1489.45349121094 2055.95751953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR108C /GEN=REX3 /DB_XREF=GI:6323137 /SEG=NC_001144:-366668,368125 /DEF=Hypothetical ORF /NOTE=Ylr108cp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004098 // YLR108C SGDID:S0004098, Chr XII from 368125-366668, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017904 // cdna:Genscan chromosome:SGD1:XII:366668:368125:-1 // ensembl // 11 // --- /// YLR108C // cdna:known chromosome:SGD1:XII:366668:368125:-1 gene:YLR108C // ensembl // 11 // --- --- No cerevisiae_gene -1.54547332656974 -1.33789483149016 -1.16840145779757 -1.44384799275964 -1.04600625896398 Max fold change below threshold 4 1.54547332656974 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773656_at YCL056C.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.54541931651252 624.842529296875 499.619857788086 --- --- 5737 // cytoplasm // inferred from direct assay --- 483.611785888672 615.313171386719 634.371887207031 515.6279296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL056C /GEN=PRD1 /DB_XREF=GI:6319794 /SEG=NC_001135:-26925,27359 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ycl056cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000561 // YCL056C SGDID:S0000561, Chr III from 27359-26925, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YCL056C // cdna:known chromosome:SGD1:III:26925:27359:-1 gene:YCL056C // ensembl // 11 // --- --- No cerevisiae_gene -1.14711441240375 1.27232873420576 1.54541931651252 1.31173785610151 1.06620215787338 Max fold change below threshold 4 1.54541931651252 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772158_at SPBC1539.03c.S1 --- 1.54538037690001 --- --- --- --- 1.02807176113129 1.58876192569733 0.848342061042786 1.01837003231049 0.696289002895355 0.633789002895355 0.805419981479645 0.633789002895355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1539.03c /GEN=argx /DEF=argininosuccinate lyase (putative) --- --- --- --- --- --- SPBC1539.03c // |||argininosuccinate lyase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.42079517066537 1.54538037690001 -1.42768982143553 -1.21185994228269 -1.00952672261849 Max fold change below threshold 0 1.54538037690001 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777964_at YPL181W.S1 Protein that relieves transcriptional repression by binding to the Cyc8p-Tup1p corepressor and recruiting the SAGA complex to the repressed promoter; contains a PHD finger domain 1.54520579920248 1759.08898925781 1248.78863525391 CTI6 45941 // positive regulation of transcription // inferred from mutant phenotype 5634 // nucleus // inferred from curator 8134 // transcription factor binding // inferred from direct assay 1220.60998535156 1632.08435058594 1886.09362792969 1276.96728515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL181W /GEN=CTI6 /DB_XREF=GI:6325075 /SEG=NC_001148:+203420,204940 /DEF=Protein that relieves transcriptional repression by binding to the Cyc8p-Tup1p corepressor and recruiting the SAGA complex to the repressed promoter; contains a PHD finger domain /NOTE=Cti6p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 12086626]; go_function: transcription factor binding [goid GO:0008134] [evidence IDA] [pmid 12086626]; go_process: positive regulation of transcription [goid GO:0045941] [evidence IMP] [pmid 12086626] --- --- --- --- --- --- S0006102 // CTI6 SGDID:S0006102, Chr XVI from 203420-204940, Verified ORF // sgd // 11 // --- /// GENSCAN00000017047 // cdna:Genscan chromosome:SGD1:XVI:203420:204940:1 // ensembl // 11 // --- /// GENEFINDER00000020957 // cdna:GeneFinder chromosome:SGD1:XVI:203420:204940:1 // ensembl // 11 // --- /// YPL181W // cdna:known chromosome:SGD1:XVI:203420:204940:1 gene:YPL181W // ensembl // 11 // --- --- No cerevisiae_gene -1.13285930128064 1.33710552115126 -1.15532041963977 1.54520579920248 1.04617142287957 Max fold change below threshold 4 1.54520579920248 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769681_at YOL105C.S1 Partially redundant sensor-transducer of the stress-activated PKC1-MPK1 signaling pathway involved in maintenance of cell wall integrity; involved in the response to heat shock and other stressors; regulates 1,3-beta-glucan synthesis 1.54500989343102 1635.36407470703 1752.73913574219 WSC3 7047 // cell wall organization and biogenesis // traceable author statement /// 7266 // Rho protein signal transduction // inferred from sequence similarity /// 7266 // Rho protein signal transduction // inferred from genetic interaction /// 9408 // response to heat // inferred from sequence similarity /// 9408 // response to heat // inferred from genetic interaction /// 30036 // actin cytoskeleton organization and biogenesis // traceable author statement 5624 // membrane fraction // inferred from sequence similarity 4888 // transmembrane receptor activity // inferred from genetic interaction /// 4888 // transmembrane receptor activity // inferred from sequence similarity 1680.796875 1715.02856445313 1555.69958496094 1824.68139648438 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL105C /GEN=WSC3 /DB_XREF=GI:6324467 /SEG=NC_001147:-114137,115807 /DEF=cell wall integrity and stress response component 3 /NOTE=Wsc3p; go_component: membrane fraction [goid GO:0005624] [evidence ISS] [pmid 10348843]; go_function: transmembrane receptor activity [goid GO:0004888] [evidence IGI,ISS] [pmid 10430578]; go_process: Rho protein signal transduction [goid GO:0007266] [evidence IGI] [pmid 10348843]; go_process: Rho protein signal transduction [goid GO:0007266] [evidence ISS] [pmid 10508863]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence TAS] [pmid 10508863]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence TAS] [pmid 10348843]; go_process: response to heat [goid GO:0009408] [evidence IGI] [pmid 10348843]; go_process: response to heat [goid GO:0009408] [evidence ISS] [pmid 10508863] --- --- --- --- --- S0005465 // span:13-35,382-404 // numtm:2 S0005465 // WSC3 SGDID:S0005465, Chr XV from 115807-114137, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017380 // cdna:Genscan chromosome:SGD1:XV:114137:114889:-1 // ensembl // 11 // --- /// GENEFINDER00000022615 // cdna:GeneFinder chromosome:SGD1:XV:114137:115453:-1 // ensembl // 11 // --- /// YOL105C // cdna:known chromosome:SGD1:XV:114137:115807:-1 gene:YOL105C // ensembl // 11 // --- --- No cerevisiae_gene -1.31919785158664 1.02036634525104 -1.54500989343102 -1.08041224105758 1.08560494347919 Max fold change below threshold 4 1.54500989343102 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779605_at YCL008C.S1 Component of the ESCRT-I complex, which is involved in ubiquitin-dependent sorting of proteins into the endosome; homologous to the mouse and human Tsg101 tumor susceptibility gene; mutants exhibit a Class E Vps phenotype 1.54482269140967 417.779174804688 623.427581787109 STP22 6612 // protein-membrane targeting // inferred from mutant phenotype /// 6612 // protein-membrane targeting // inferred from physical interaction /// 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6623 // protein-vacuolar targeting // inferred from physical interaction /// 43162 // ubiquitin-dependent protein catabolism via the multivesicular body pathway // inferred from curator 813 // ESCRT I complex // traceable author statement /// 813 // ESCRT I complex // inferred from direct assay /// 5768 // endosome // inferred from direct assay /// 5768 // endosome // inferred from physical interaction 5515 // protein binding // inferred from direct assay 582.805480957031 377.263671875 458.294677734375 664.049682617188 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL008C /GEN=STP22 /DB_XREF=GI:42759852 /SEG=NC_001135:-105695,106852 /DEF=Ste pseudorevertant; required for vacuolar targeting of temperature-sensitive plasma membrane proteins; homologous to the mouse and human Tsg101 tumor susceptibility gene; mutants exhibit a Class E Vps phenotype. /NOTE=Stp22p; go_component: ESCRT I complex [goid GO:0000813] [evidence TAS] [pmid 12900393]; go_component: endosome [goid GO:0005768] [evidence IDA,IPI] [pmid 11511343]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 11511343]; go_process: protein-membrane targeting [goid GO:0006612] [evidence IMP,IPI] [pmid 11511343]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP,IPI] [pmid 11511343] --- --- --- --- --- --- S0000514 // STP22 SGDID:S0000514, Chr III from 106852-105695, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022459 // cdna:Genscan chromosome:SGD1:III:105695:106852:-1 // ensembl // 11 // --- /// GENEFINDER00000023368 // cdna:GeneFinder chromosome:SGD1:III:105695:106852:-1 // ensembl // 11 // --- /// YCL008C // cdna:known chromosome:SGD1:III:105695:106852:-1 gene:YCL008C // ensembl // 11 // --- --- No cerevisiae_gene -1.29952881850234 -1.54482269140967 -1.23889543813505 -1.27168284789644 1.13940191764625 Max fold change below threshold 4 1.54482269140967 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770009_at YMR115W.S1 The authentic, non-tagged protein was localized to the mitochondria 1.54481221721618 494.335723876953 446.826782226563 --- --- 5739 // mitochondrion // inferred from direct assay --- 424.432159423828 444.511535644531 544.159912109375 469.221405029297 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR115W /GEN=FOL3 /DB_XREF=GI:6323762 /SEG=NC_001145:+497703,499208 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ymr115wp --- --- --- --- --- S0004721 // span:78-95 // numtm:1 S0004721 // FMP24 SGDID:S0004721, Chr XIII from 497703-499208, Uncharacterized ORF // sgd // 10 // --- /// GENEFINDER00000022059 // cdna:GeneFinder chromosome:SGD1:XIII:497898:499208:1 // ensembl // 10 // --- /// GENSCAN00000018809 // cdna:Genscan chromosome:SGD1:XIII:498069:499208:1 // ensembl // 10 // --- /// YMR115W // cdna:known chromosome:SGD1:XIII:497703:499208:1 gene:YMR115W // ensembl // 10 // --- --- No cerevisiae_gene -1.54481221721618 1.04730880018131 1.14256712046261 1.28208925744006 1.10552745500311 Max fold change below threshold 4 1.54481221721618 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772903_at YOR034C.S1 Ankyrin repeat-containing protein of unknown function, similar to Akr1p; possibly involved in constitutive endocytosis of Ste3p 1.54451849356686 693.226257324219 597.705596923828 AKR2 6897 // endocytosis // inferred from sequence similarity --- --- 584.90625 711.301696777344 675.150817871094 610.504943847656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR034C /GEN=AKR2 /DB_XREF=GI:6324608 /SEG=NC_001147:-394836,397085 /DEF=Protein involved in constitutive endocytosis of Ste3p /NOTE=Akr2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005560 // span:154-176,300-319,323-345,358-380,395-413,490-512,548-570 // numtm:7 S0005560 // AKR2 SGDID:S0005560, Chr XV from 397085-394836, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017489 // cdna:Genscan chromosome:SGD1:XV:394836:397076:-1 // ensembl // 11 // --- /// GENEFINDER00000022862 // cdna:GeneFinder chromosome:SGD1:XV:394836:397076:-1 // ensembl // 11 // --- /// YOR034C // cdna:known chromosome:SGD1:XV:394836:397085:-1 gene:YOR034C // ensembl // 11 // --- --- No cerevisiae_gene -1.54451849356686 1.21609522342656 -1.17198758707032 1.15428894437543 1.0437654647179 Max fold change below threshold 4 1.54451849356686 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771792_at YLR120C.S1 Aspartic protease, attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor 1.54443180271211 2273.52453613281 3345.3095703125 YPS1 16485 // protein processing // inferred from direct assay 9277 // cell wall (sensu Fungi) // inferred from direct assay 4190 // aspartic-type endopeptidase activity // inferred from direct assay 3492.68237304688 2285.58154296875 2261.46752929688 3197.93676757813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR120C /GEN=YPS1 /DB_XREF=GI:6323149 /SEG=NC_001144:-386512,388221 /DEF=Aspartic protease, attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor /NOTE=Yps1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: aspartic-type endopeptidase activity [goid GO:0004190] [evidence IDA] [pmid 8389368]; go_process: protein processing [goid GO:0016485] [evidence IDA] [pmid 8626758] --- --- --- --- --- --- S0004110 // YPS1 SGDID:S0004110, Chr XII from 388221-386512, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017913 // cdna:Genscan chromosome:SGD1:XII:386512:388221:-1 // ensembl // 11 // --- /// GENEFINDER00000024600 // cdna:GeneFinder chromosome:SGD1:XII:386512:388221:-1 // ensembl // 11 // --- /// YLR120C // cdna:known chromosome:SGD1:XII:386512:388221:-1 gene:YLR120C // ensembl // 11 // --- --- No cerevisiae_gene -1.17490853125213 -1.5281372847062 1.02464066368671 -1.54443180271211 -1.09216742759175 Max fold change below threshold 4 1.54443180271211 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771841_at YJL024C.S1 Small subunit of the clathrin-associated adaptor complex AP-3, which is involved in vacuolar protein sorting; related to the sigma subunit of the mammalian clathrin AP-3 complex; suppressor of loss of casein kinase 1 function 1.5444147662304 346.609954833984 437.920761108398 APS3 6896 // Golgi to vacuole transport // inferred from mutant phenotype /// 16192 // vesicle-mediated transport // traceable author statement 30123 // AP-3 adaptor complex // inferred from sequence similarity --- 388.085113525391 276.983703613281 416.236206054688 487.756408691406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL024C /GEN=APS3 /DB_XREF=GI:6322436 /SEG=NC_001142:-395847,396508 /DEF=sigma3-like subunit of the yeast AP-3 complex which functions in transport of alkaline phosphatase to the vacuole via the alternate pathway, suppressor of loss of casein kinase 1 function /NOTE=Aps3p; go_component: AP-3 adaptor complex [goid GO:0030123] [evidence ISS] [pmid 9335339]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi to vacuole transport [goid GO:0006896] [evidence IMP] [pmid 9335339] --- --- --- --- --- --- S0003561 // APS3 SGDID:S0003561, Chr X from 396508-396487,396409-395847, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YJL024C // cdna:known chromosome:SGD1:X:395847:396508:-1 gene:YJL024C // ensembl // 11 // --- GENSCAN00000024119 // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene 1.5444147662304 -1.40111172051922 1.42910217867379 1.07253844980955 1.2568284422471 Max fold change below threshold 4 1.5444147662304 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774401_at YGL008C.S1 Plasma membrane H+-ATPase, pumps protons out of the cell; major regulator of cytoplasmic pH and plasma membrane potential; part of the P2 subgroup of cation-transporting ATPases 1.54432256704156 5727.56713867188 5775.15771484375 PMA1 6885 // regulation of pH // inferred from expression pattern /// 15992 // proton transport // inferred from direct assay 5886 // plasma membrane // inferred from direct assay /// 45121 // lipid raft // inferred from direct assay 8553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // traceable author statement 6759.02783203125 7001.6201171875 4453.51416015625 4791.28759765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL008C /GEN=PMA1 /DB_XREF=GI:6321430 /SEG=NC_001139:-479913,482669 /DEF=Major regulator of cytoplasmic pH. Part of the P2 subgroup of cation-transporting ATPases; functions physiologically to pump protons out of the cell. /NOTE=Pma1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11914276]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 11914276]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: hydrogen-exporting ATPase activity, phosphorylative mechanism [goid GO:0008553] [evidence TAS] [pmid 12169695]; go_process: proton transport [goid GO:0015992] [evidence IDA] [pmid 8396147]; go_process: regulation of pH [goid GO:0006885] [evidence IEP] [pmid 8929277] --- --- --- ec // A1A3_HUMAN // (P13637) Sodium/potassium-transporting ATPase alpha-3 chain (EC 3.6.3.9) (Sodium pump 3) (Na+/K+ ATPase 3) (Alpha(III)) // 0.0 --- S0002976 // span:112-134,138-160,289-311,331-353,691-713,719-738,751-773,788-810,823-845,855-874 // numtm:10 S0002976 // PMA1 SGDID:S0002976, Chr VII from 482671-479915, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019334 // cdna:Genscan chromosome:SGD1:VII:479915:482671:-1 // ensembl // 11 // --- /// GENEFINDER00000021720 // cdna:GeneFinder chromosome:SGD1:VII:479915:482671:-1 // ensembl // 11 // --- /// YGL008C // cdna:known chromosome:SGD1:VII:479915:482671:-1 gene:YGL008C // ensembl // 11 // --- --- No cerevisiae_gene -1.350511370305 1.03589159435128 -1.54432256704156 -1.51768414536581 -1.41069132133449 Max fold change below threshold 4 1.54432256704156 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771188_at YNL217W.S1 Hypothetical protein 1.54420712631964 766.770965576172 623.587432861328 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay 16791 // phosphoric monoester hydrolase activity // inferred from sequence similarity 574.090148925781 647.02783203125 886.514099121094 673.084716796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL217W /GEN=MGS1 /DB_XREF=GI:6324112 /SEG=NC_001146:+240330,241310 /DEF=Hypothetical ORF /NOTE=Ynl217wp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: phosphoric monoester hydrolase activity [goid GO:0016791] [evidence ISS] [pmid 10618406]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005161 // span:12-29 // numtm:1 S0005161 // YNL217W SGDID:S0005161, Chr XIV from 240330-241310, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019867 // cdna:Genscan chromosome:SGD1:XIV:240330:241310:1 // ensembl // 11 // --- /// GENEFINDER00000020526 // cdna:GeneFinder chromosome:SGD1:XIV:240330:241310:1 // ensembl // 11 // --- /// YNL217W // cdna:known chromosome:SGD1:XIV:240330:241310:1 gene:YNL217W // ensembl // 11 // --- --- No cerevisiae_gene 1.35153259770231 1.12704918076359 1.0754165500288 1.54420712631964 1.17243732200653 Max fold change below threshold 4 1.54420712631964 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770672_at YER123W.S1 Palmitoylated, vacuolar membrane-localized casein kinase I isoform; negatively regulates vacuole fusion during hypertonic stress via phosphorylation of the HOPS complex subunit, Vps41p; shares overlapping essential functions with Hrr25p 1.54386090739894 374.275100708008 558.040191650391 YCK3 6468 // protein amino acid phosphorylation // inferred from sequence similarity 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 5634 // nucleus // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 4681 // casein kinase I activity // inferred from sequence similarity 522.902221679688 338.69775390625 409.852447509766 593.178161621094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER123W /GEN=YCK3 /DB_XREF=GI:7276233 /SEG=NC_001137:+404809,406383 /DEF=plasma membrane-bound casein kinase I homolog /NOTE=Yck3p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8816449]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 8816449]; go_function: casein kinase I activity [goid GO:0004681] [evidence ISS] [pmid 8816449]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence ISS] [pmid 8816449] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-40 /// hanks // 2.3.3 // CaMK Group; CaMK Other; PfPK2 // 6.0E-41 --- --- S0000925 // YCK3 SGDID:S0000925, Chr V from 404809-406383, Verified ORF // sgd // 11 // --- /// GENSCAN00000016904 // cdna:Genscan chromosome:SGD1:V:404809:406383:1 // ensembl // 11 // --- /// GENEFINDER00000019623 // cdna:GeneFinder chromosome:SGD1:V:404962:406383:1 // ensembl // 11 // --- /// YER123W // cdna:known chromosome:SGD1:V:404809:406383:1 gene:YER123W // ensembl // 11 // --- --- No cerevisiae_gene 1.50800597159175 -1.54386090739894 1.0809729632565 -1.27583042350193 1.134395948282 Max fold change below threshold 4 1.54386090739894 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779696_at YLR114C.S1 PHO85 Requiring 1.54385561460144 68.2361621856689 48.4554328918457 --- --- 5737 // cytoplasm // inferred from direct assay --- 48.0055809020996 62.3586387634277 74.1136856079102 48.9052848815918 0.000244141003349796 0.00415039015933871 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR114C /GEN=HOG1 /DB_XREF=GI:6323143 /SEG=NC_001144:-374945,377239 /DEF=PHO85 Requiring /NOTE=Ylr114cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 8.5 --- S0004104 // YLR114C SGDID:S0004104, Chr XII from 377239-374945, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENEFINDER00000024731 // cdna:GeneFinder chromosome:SGD1:XII:374945:377239:-1 // ensembl // 10 // --- /// YLR114C // cdna:known chromosome:SGD1:XII:374945:377239:-1 gene:YLR114C // ensembl // 10 // --- GENSCAN00000017908 // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene -1.08631051291768 1.29898727588776 1.03169994536876 1.54385561460144 1.0187416538366 Max fold change below threshold 4 1.54385561460144 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776371_at YOL113W.S1 Member of the PAK family of serine/threonine protein kinases with similarity to Ste20p and Cla4p; proposed to be a downstream effector of Cdc42p during polarized growth 1.54381815921442 2595.0576171875 2148.67932128906 SKM1 74 // regulation of cell cycle // inferred from genetic interaction /// 920 // cell separation during cytokinesis // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from sequence similarity --- 4674 // protein serine/threonine kinase activity // inferred from sequence similarity 2196.49951171875 2822.52514648438 2367.59008789063 2100.85913085938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL113W /GEN=SKM1 /DB_XREF=GI:6324459 /SEG=NC_001147:+104325,106292 /DEF=Serine/threonine protein kinase with similarity to Ste20p and Cla4p /NOTE=Skm1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence ISS] [pmid 9044278]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence ISS] [pmid 9044278]; go_process: regulation of cell cycle [goid GO:0000074] [evidence IGI] [pmid 9422741] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 3.0E-56 /// hanks // 2.1.17 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH // 2.0E-64 --- --- S0005473 // SKM1 SGDID:S0005473, Chr XV from 104325-106292, Verified ORF // sgd // 11 // --- /// GENSCAN00000017375 // cdna:Genscan chromosome:SGD1:XV:104325:106292:1 // ensembl // 11 // --- /// GENEFINDER00000022793 // cdna:GeneFinder chromosome:SGD1:XV:104886:106292:1 // ensembl // 11 // --- /// YOL113W // cdna:known chromosome:SGD1:XV:104325:106292:1 gene:YOL113W // ensembl // 11 // --- --- No cerevisiae_gene -1.54381815921442 1.28501059591667 -1.12196685040294 1.07789238069896 -1.0455244140145 Max fold change below threshold 4 1.54381815921442 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774137_at YEL039C.S1 Cytochrome c isoform 2, expressed under hypoxic conditions; electron carrier of the mitochondrial intermembrane space that transfers electrons from ubiquinone-cytochrome c oxidoreductase to cytochrome c oxidase during cellular respiration 1.54374617083223 4522.54113769531 3365.23010253906 CYC7 6118 // electron transport // inferred from direct assay 5758 // mitochondrial intermembrane space // inferred from direct assay 9055 // electron carrier activity // inferred from direct assay 3790.82006835938 5852.06396484375 3193.01831054688 2939.64013671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL039C /GEN=CYC7 /DB_XREF=GI:6320796 /SEG=NC_001137:-79636,79977 /DEF=Cytochrome c isoform 2, expressed under hypoxic conditions; electron carrier of the mitochondrial intermembrane space that transfers electrons from ubiquinone-cytochrome c oxidoreductase to cytochrome c oxidase during cellular respiration /NOTE=Cyc7p; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence IDA] [pmid 8636074]; go_function: electron carrier activity [goid GO:0009055] [evidence IDA] [pmid 6244566]; go_process: electron transport [goid GO:0006118] [evidence IDA] [pmid 6244566] --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 0.0 --- S0000765 // CYC7 SGDID:S0000765, Chr V from 79977-79636, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016771 // cdna:Genscan chromosome:SGD1:V:79636:79977:-1 // ensembl // 11 // --- /// GENEFINDER00000019731 // cdna:GeneFinder chromosome:SGD1:V:79636:79977:-1 // ensembl // 11 // --- /// YEL039C // cdna:known chromosome:SGD1:V:79636:79977:-1 gene:YEL039C // ensembl // 11 // --- S66130 // gb // 7 // Negative Strand Matching Probes No cerevisiae_gene -1.1010336266549 1.54374617083223 -1.37262067472454 -1.18722152511243 -1.28955242548522 Max fold change below threshold 4 1.54374617083223 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778196_at YKR095W.S1 Myosin-like protein associated with the nuclear envelope, connects the nuclear pore complex with the nuclear interior; involved in the Tel1p pathway that controls telomere length; involved in the retention of unspliced mRNAs in the nucleus 1.54355088627878 426.897399902344 569.409088134766 MLP1 6406 // mRNA-nucleus export // inferred from genetic interaction /// 6406 // mRNA-nucleus export // inferred from physical interaction /// 6606 // protein-nucleus import // inferred from genetic interaction /// 45449 // regulation of transcription // inferred from genetic interaction /// 45449 // regulation of transcription // inferred from expression pattern 5635 // nuclear membrane // inferred from direct assay /// 5654 // nucleoplasm // inferred from direct assay /// 30530 // heterogeneous nuclear ribonucleoprotein complex // inferred from physical interaction 43021 // ribonucleoprotein binding // inferred from genetic interaction /// 43021 // ribonucleoprotein binding // inferred from physical interaction 565.967041015625 366.665618896484 487.129180908203 572.851135253906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR095W /GEN=MLP1 /DB_XREF=GI:6322948 /SEG=NC_001143:+619445,625072 /DEF=Mlp proteins restrict telomere length by influencing the Rif1-Tel1 pathway of telomerase regulation; also involved in the translocation of macromolecules between the nucleoplasm and the NPC /NOTE=Mlp1p; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 10085285]; go_component: nucleoplasm [goid GO:0005654] [evidence IDA] [pmid 10085285]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-nucleus import [goid GO:0006606] [evidence IDA] [pmid 10085285] --- --- --- --- --- --- S0001803 // MLP1 SGDID:S0001803, Chr XI from 619447-625074, Verified ORF // sgd // 11 // --- /// GENSCAN00000018496 // cdna:Genscan chromosome:SGD1:XI:619447:625074:1 // ensembl // 11 // --- /// GENEFINDER00000023044 // cdna:GeneFinder chromosome:SGD1:XI:620332:625074:1 // ensembl // 11 // --- /// YKR095W // cdna:known chromosome:SGD1:XI:619447:625074:1 gene:YKR095W // ensembl // 11 // --- --- No cerevisiae_gene -1.51113768518571 -1.54355088627878 -1.03701238390958 -1.1618417930957 1.01216341896151 Max fold change below threshold 4 1.54355088627878 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773423_at YOR183W.S1 Protein of unknown function, required for survival upon exposure to K1 killer toxin 1.5435331828374 17.7327561378479 16.7923302650452 FYV12 --- --- --- 20.3807201385498 20.225528717041 15.2399835586548 13.2039403915405 0.018554700538516 0.0561522990465164 0.194580003619194 0.0676269978284836 P M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR183W /GEN=FYV12 /DB_XREF=GI:6324757 /SEG=NC_001147:+678872,679261 /DEF=Protein of unknown function, required for survival upon exposure to K1 killer toxin /NOTE=Fyv12p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005709 // span:109-128 // numtm:1 S0005709 // FYV12 SGDID:S0005709, Chr XV from 678872-679261, Uncharacterized ORF // sgd // 11 // --- /// YOR183W // cdna:known chromosome:SGD1:XV:678872:679261:1 gene:YOR183W // ensembl // 11 // --- --- No cerevisiae_gene 1.10733080108526 -1.00767304645925 -1.23989301431021 -1.33731903713082 -1.5435331828374 Max fold change below threshold 4 1.5435331828374 Max fold change below threshold PPMAAA No 4 0 PMAA 2 1 1 No No x = 1
1774868_at YIL001W.S1 Hypothetical protein 1.54349088214015 510.549301147461 546.602432250977 --- --- 5737 // cytoplasm // inferred from direct assay --- 503.090911865234 549.98583984375 471.112762451172 590.113952636719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL001W /GEN=INP51 /DB_XREF=GI:6322190 /SEG=NC_001141:+353937,355478 /DEF=Hypothetical ORF /NOTE=Yil001wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001263 // YIL001W SGDID:S0001263, Chr IX from 353937-355478, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016475 // cdna:Genscan chromosome:SGD1:IX:353937:355478:1 // ensembl // 11 // --- /// GENEFINDER00000019064 // cdna:GeneFinder chromosome:SGD1:IX:354000:355478:1 // ensembl // 11 // --- /// YIL001W // cdna:known chromosome:SGD1:IX:353937:355478:1 gene:YIL001W // ensembl // 11 // --- --- No cerevisiae_gene 1.54349088214015 1.09321362575335 -1.18559112587511 -1.06787790941532 1.17297676964357 Max fold change below threshold 4 1.54349088214015 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776440_at YNL323W.S1 Membrane protein of the plasma membrane and ER, involved in translocation of phospholipids and alkylphosphocholine drugs across the plasma membrane 1.54294093242127 535.24951171875 431.088043212891 LEM3 7166 // cell surface receptor linked signal transduction // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity 30528 // transcription regulator activity // inferred from sequence similarity /// 30528 // transcription regulator activity // inferred from genetic interaction 402.282806396484 449.800415039063 620.698608398438 459.893280029297 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL323W /GEN=LEM3 /DB_XREF=GI:6324006 /SEG=NC_001146:+31943,33187 /DEF=plays an important role in phospholipid translocation across the plasma membrane. /NOTE=Lem3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 12133835]; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 11063677]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12133835]; go_function: transcription regulator activity [goid GO:0030528] [evidence IGI,ISS] [pmid 11180453]; go_process: cell surface receptor linked signal transduction [goid GO:0007166] [evidence IMP] [pmid 11063677] --- --- --- --- --- S0005267 // span:75-97,376-398 // numtm:2 S0005267 // LEM3 SGDID:S0005267, Chr XIV from 31943-33187, Verified ORF // sgd // 10 // --- /// GENSCAN00000019784 // cdna:Genscan chromosome:SGD1:XIV:31943:33187:1 // ensembl // 10 // --- /// GENEFINDER00000020661 // cdna:GeneFinder chromosome:SGD1:XIV:31943:33187:1 // ensembl // 10 // --- /// YNL323W // cdna:known chromosome:SGD1:XIV:31943:33187:1 gene:YNL323W // ensembl // 10 // --- --- No cerevisiae_gene 1.12197728979427 1.11811990939465 1.44853297332735 1.54294093242127 1.14320888866434 Max fold change below threshold 4 1.54294093242127 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775966_at YNL010W.S1 Hypothetical protein 1.54287380528316 1637.77423095703 1187.51916503906 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1130.93786621094 1550.22729492188 1725.32116699219 1244.10046386719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL010W /GEN=SPO1 /DB_XREF=GI:6324318 /SEG=NC_001146:+613633,614358 /DEF=Hypothetical ORF /NOTE=Ynl010wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004955 // YNL010W SGDID:S0004955, Chr XIV from 613634-614359, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020029 // cdna:Genscan chromosome:SGD1:XIV:613634:614359:1 // ensembl // 11 // --- /// GENEFINDER00000020593 // cdna:GeneFinder chromosome:SGD1:XIV:613634:614359:1 // ensembl // 11 // --- /// YNL010W // cdna:known chromosome:SGD1:XIV:613634:614359:1 gene:YNL010W // ensembl // 11 // --- --- No cerevisiae_gene 1.54287380528316 1.37074488461131 1.2579508999969 1.52556671638616 1.10006084422249 Max fold change below threshold 4 1.54287380528316 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775703_at YDL074C.S1 E3 ubiquitin ligase for Rad6p, required for the ubiquitination of histone H2B, recruitment of Rad6p to promoter chromatin and subsequent methylation of histone H3 (on L4 and L79), contains RING finger domain 1.54246878004013 1102.56506347656 1409.38146972656 BRE1 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 6513 // protein monoubiquitination // inferred from mutant phenotype /// 16571 // histone methylation // inferred from mutant phenotype /// 16574 // histone ubiquitination // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 4842 // ubiquitin-protein ligase activity // inferred from mutant phenotype /// 4842 // ubiquitin-protein ligase activity // inferred from physical interaction /// 4842 // ubiquitin-protein ligase activity // inferred from sequence similarity 1383.64721679688 1308.09594726563 897.0341796875 1435.11572265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL074C /GEN=BRE1 /DB_XREF=GI:6320129 /SEG=NC_001136:-324047,326149 /DEF=E3 ubiquitin ligase for Rad6p, required for the ubiquitination of histone H2B, recruitment of Rad6p to promoter chromatin and subsequent methylation of histone H3 (on L4 and L79), contains RING finger domain /NOTE=Bre1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12206772]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence IMP,IPI,ISS] [pmid 12535539]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 12535539]; go_process: histone methylation [goid GO:0016571] [evidence IMP] [pmid 12535538]; go_process: histone ubiquitination [goid GO:0016574] [evidence IMP] [pmid 12535538]; go_process: protein monoubiquitination [goid GO:0006513] [evidence IMP] [pmid 12535538] --- --- --- --- --- --- S0002232 // BRE1 SGDID:S0002232, Chr IV from 326149-324047, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023938 // cdna:GeneFinder chromosome:SGD1:IV:324047:326149:-1 // ensembl // 11 // --- /// GENSCAN00000025046 // cdna:Genscan chromosome:SGD1:IV:324047:326149:-1 // ensembl // 11 // --- /// YDL074C // cdna:known chromosome:SGD1:IV:324047:326149:-1 gene:YDL074C // ensembl // 11 // --- --- No cerevisiae_gene 1.18499885044674 -1.05775667273427 -1.27996042285483 -1.54246878004013 1.03719770851599 Max fold change below threshold 4 1.54246878004013 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771675_at YFR002W.S1 Component of the nuclear pore complex, required for nuclear pore formation; forms a subcomplex with Nsp1p, Nup57p, and Nup49p 1.54207960447939 854.184967041016 851.134002685547 NIC96 6406 // mRNA-nucleus export // traceable author statement /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6606 // protein-nucleus import // inferred from mutant phenotype /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6999 // nuclear pore organization and biogenesis // inferred from mutant phenotype 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement 795.085388183594 872.152587890625 836.217346191406 907.1826171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR002W /GEN=NIC96 /DB_XREF=GI:14318524 /SEG=NC_001138:+150011,152530 /DEF=Part of complex at nuclear pore containing in addition NSP1p, NUP49p, and p54 /NOTE=Nic96p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence TAS] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence IMP] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus import [goid GO:0006606] [evidence IMP] [pmid 9442897]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0001898 // NIC96 SGDID:S0001898, Chr VI from 150011-152530, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018558 // cdna:GeneFinder chromosome:SGD1:VI:150011:152530:1 // ensembl // 11 // --- /// GENSCAN00000023244 // cdna:Genscan chromosome:SGD1:VI:150011:152530:1 // ensembl // 11 // --- /// YFR002W // cdna:known chromosome:SGD1:VI:150011:152530:1 gene:YFR002W // ensembl // 11 // --- --- No cerevisiae_gene 1.54207960447939 1.09692946298899 -1.03792176919069 1.05173275552426 1.14098766078446 Max fold change below threshold 4 1.54207960447939 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777087_at YKR048C.S1 Protein that interacts with mitotic cyclin Clb2p; required for the regulation of microtubule dynamics during mitosis; controls bud morphogenesis; involved in the transport of H2A and H2B histones to the nucleus 1.54173488160993 3484.76257324219 2364.7919921875 NAP1 87 // M phase of mitotic cell cycle // traceable author statement /// 6334 // nucleosome assembly // inferred from direct assay /// 6334 // nucleosome assembly // inferred from sequence similarity /// 7117 // budding cell bud growth // inferred from mutant phenotype /// 7117 // budding cell bud growth // inferred from genetic interaction 5634 // nucleus // inferred from physical interaction /// 5737 // cytoplasm // traceable author statement 5515 // protein binding // traceable author statement 2409.853515625 3254.169921875 3715.35522460938 2319.73046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR048C /GEN=NAP1 /DB_XREF=GI:6322901 /SEG=NC_001143:-525029,526282 /DEF=nucleosome assembly protein I /NOTE=Nap1p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 13680156]; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 10767562]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 8743889]; go_process: M phase of mitotic cell cycle [goid GO:0000087] [evidence TAS] [pmid 8743889]; go_process: bud growth [goid GO:0007117] [evidence IGI,IMP] [pmid 13680156]; go_process: nucleosome assembly [goid GO:0006334] [evidence IDA,ISS] [pmid 2016313] --- --- --- --- --- --- S0001756 // NAP1 SGDID:S0001756, Chr XI from 526282-525029, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018457 // cdna:Genscan chromosome:SGD1:XI:525029:526282:-1 // ensembl // 11 // --- /// GENEFINDER00000023129 // cdna:GeneFinder chromosome:SGD1:XI:525029:526282:-1 // ensembl // 11 // --- /// YKR048C // cdna:known chromosome:SGD1:XI:525029:526282:-1 gene:YKR048C // ensembl // 11 // --- YKR047W // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene -1.05048260478343 1.35036005332923 -1.13974192317738 1.54173488160993 -1.03885065445709 Max fold change below threshold 4 1.54173488160993 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777152_at YNR056C.S1 Putative transmembrane protein involved in the biotin biosynthesis pathway; responsible for uptake of 7-keto 8-aminopelargonic acid; BIO5 is in a cluster of 3 genes (BIO3, BIO4, and BIO5) that mediate biotin synthesis 1.54136208167239 48.4856052398682 46.8254814147949 BIO5 9102 // biotin biosynthesis // inferred from mutant phenotype /// 51180 // vitamin transport // inferred from direct assay /// 51180 // vitamin transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from sequence similarity 15646 // permease activity // inferred from direct assay /// 15646 // permease activity // inferred from sequence similarity 46.8996467590332 47.6287956237793 49.342414855957 46.7513160705566 0.00292969006113708 0.00415039015933871 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR056C /GEN=BIO5 /DB_XREF=GI:6324384 /SEG=NC_001146:-731615,733300 /DEF=transmembrane regulator of KAPA/DAPA transport /NOTE=Bio5p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 10333520]; go_function: permease activity [goid GO:0015646] [evidence IDA,ISS] [pmid 10333520]; go_process: biotin biosynthesis [goid GO:0009102] [evidence IMP] [pmid 10333520]; go_process: vitamin/cofactor transport [goid GO:0015875] [evidence IDA,IMP] [pmid 10333520] --- --- --- --- --- S0005339 // span:50-72,77-99,165-187,230-252,284-306,321-343,370-392,458-480,509-531,541-560 // numtm:10 S0005339 // BIO5 SGDID:S0005339, Chr XIV from 733301-731616, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020083 // cdna:Genscan chromosome:SGD1:XIV:731616:733100:-1 // ensembl // 11 // --- /// GENEFINDER00000020685 // cdna:GeneFinder chromosome:SGD1:XIV:731616:733211:-1 // ensembl // 11 // --- /// YNR056C // cdna:known chromosome:SGD1:XIV:731616:733301:-1 gene:YNR056C // ensembl // 11 // --- --- No cerevisiae_gene 1.54136208167239 1.01554700120648 -1.09919038999948 1.05208499990362 -1.00317275963425 Max fold change below threshold 4 1.54136208167239 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770744_at YKL035W.S1 UDP-glucose pyrophosphorylase (UGPase), catalyses the reversible formation of UDP-Glc from glucose 1-phosphate and UTP, involved in a wide variety of metabolic pathways, expression modulated by Pho85p through Pho4p 1.54116475038359 7456.7236328125 6490.37548828125 UGP1 6011 // UDP-glucose metabolism // inferred from mutant phenotype /// 6486 // protein amino acid glycosylation // traceable author statement 5737 // cytoplasm // inferred from direct assay 3983 // UTP-glucose-1-phosphate uridylyltransferase activity // inferred from mutant phenotype /// 3983 // UTP-glucose-1-phosphate uridylyltransferase activity // inferred from sequence similarity 7872.5615234375 9548.763671875 5364.68359375 5108.189453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL035W /GEN=UGP1 /DB_XREF=GI:6322815 /SEG=NC_001143:+369534,371033 /DEF=EC:2.7.7.9UDP-glucose pyrophosphorylase or UTP-glucose-1-phosphate uridylyltransferase /NOTE=Ugp1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: UTP-glucose-1-phosphate uridylyltransferase activity [goid GO:0003983] [evidence IMP,ISS] [pmid 7588797]; go_process: UDP-glucose metabolism [goid GO:0006011] [evidence IMP] [pmid 7588797]; go_process: protein amino acid glycosylation [goid GO:0006486] [evidence TAS] [pmid 7926366] --- --- --- --- --- --- S0001518 // UGP1 SGDID:S0001518, Chr XI from 369534-371033, Verified ORF // sgd // 10 // --- /// GENSCAN00000018391 // cdna:Genscan chromosome:SGD1:XI:369534:371033:1 // ensembl // 10 // --- /// GENEFINDER00000023139 // cdna:GeneFinder chromosome:SGD1:XI:369612:371033:1 // ensembl // 10 // --- /// YKL035W // cdna:known chromosome:SGD1:XI:369534:371033:1 gene:YKL035W // ensembl // 10 // --- --- No cerevisiae_gene -1.48829400843499 1.21291699575129 -1.48758805995818 -1.46747918788896 -1.54116475038359 Max fold change below threshold 4 1.54116475038359 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778905_at YMR314W.S1 20S proteasome alpha-type subunit 1.54109372062897 2332.75170898438 1695.68292236328 PRE5 6511 // ubiquitin-dependent protein catabolism // traceable author statement 19773 // proteasome core complex, alpha-subunit complex (sensu Eukaryota) // inferred from sequence similarity /// 19773 // proteasome core complex, alpha-subunit complex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement 1675.44677734375 2083.48291015625 2582.0205078125 1715.91906738281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR314W /GEN=PRE5 /DB_XREF=GI:6323974 /SEG=NC_001145:+901708,902412 /DEF=20S proteasome alpha-type subunit /NOTE=Pre5p; go_component: proteasome core complex (sensu Eukarya) [goid GO:0005839] [evidence TAS] [pmid 10872471]; go_component: proteasome core complex, alpha-subunit complex (sensu Eukarya) [goid GO:0019773] [evidence ISS] [pmid 7918444]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 10872471]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10872471] --- --- --- --- --- --- S0004931 // PRE5 SGDID:S0004931, Chr XIII from 901708-902412, Verified ORF // sgd // 11 // --- /// GENSCAN00000018980 // cdna:Genscan chromosome:SGD1:XIII:901708:902412:1 // ensembl // 11 // --- /// YMR314W // cdna:known chromosome:SGD1:XIII:901708:902412:1 gene:YMR314W // ensembl // 11 // --- --- No cerevisiae_gene -1.11997335289108 1.2435387016348 1.08484342008822 1.54109372062897 1.02415611798975 Max fold change below threshold 4 1.54109372062897 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775608_at YEL024W.S1 Ubiquinol-cytochrome-c reductase, a Rieske iron-sulfur protein of the mitochondrial cytochrome bc1 complex; transfers electrons from ubiquinol to cytochrome c1 during respiration 1.54106359482932 5730.9462890625 3982.05798339844 RIP1 6122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from direct assay /// 9060 // aerobic respiration // inferred from mutant phenotype 5750 // respiratory chain complex III (sensu Eukaryota) // inferred from direct assay 8121 // ubiquinol-cytochrome-c reductase activity // inferred from direct assay 4236.36083984375 6528.50146484375 4933.39111328125 3727.75512695313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL024W /GEN=RIP1 /DB_XREF=GI:6320811 /SEG=NC_001137:+107260,107907 /DEF=oxidizes ubiquinol at center P in the protonmotive Q cycle mechanism, transferring one electron to cytochrome c1 and generating a low-potential ubisemiquinone anion which reduces the low-potential cytochrome b-566 heme group /NOTE=Rip1p; go_component: respiratory chain complex III (sensu Eukarya) [goid GO:0005750] [evidence IDA] [pmid 10873857]; go_function: ubiquinol-cytochrome-c reductase activity [goid GO:0008121] [evidence IDA] [pmid 3036836]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 3036836]; go_process: mitochondrial electron transport, ubiquinol to cytochrome c [goid GO:0006122] [evidence IDA] [pmid 3036836] --- --- --- --- --- --- S0000750 // RIP1 SGDID:S0000750, Chr V from 107260-107907, Verified ORF // sgd // 11 // --- /// GENSCAN00000016783 // cdna:Genscan chromosome:SGD1:V:107260:107907:1 // ensembl // 11 // --- /// GENEFINDER00000019616 // cdna:GeneFinder chromosome:SGD1:V:107302:107907:1 // ensembl // 11 // --- /// YEL024W // cdna:known chromosome:SGD1:V:107260:107907:1 gene:YEL024W // ensembl // 11 // --- --- No cerevisiae_gene 1.0155008023797 1.54106359482932 1.14399692856222 1.1645351516995 -1.13643753293053 Max fold change below threshold 4 1.54106359482932 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779944_at YJL167W.S1 Farnesyl pyrophosphate synthetase, has both dimethylallyltranstransferase and geranyltranstransferase activities; catalyzes the formation of C15 farnesyl pyrophosphate units for isoprenoid and sterol biosynthesis 1.53987810276498 3529.02673339844 3734.44311523438 ERG20 6696 // ergosterol biosynthesis // traceable author statement /// 8299 // isoprenoid biosynthesis // inferred from direct assay /// 45337 // farnesyl diphosphate biosynthesis // inferred from direct assay 5829 // cytosol // traceable author statement 4161 // dimethylallyltranstransferase activity // traceable author statement /// 4161 // dimethylallyltranstransferase activity // inferred from direct assay /// 4337 // geranyltranstransferase activity // traceable author statement /// 4337 // geranyltranstransferase activity // inferred from direct assay 4160.5517578125 3600.33032226563 3457.72314453125 3308.33447265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL167W /GEN=ERG20 /DB_XREF=GI:6322294 /SEG=NC_001142:+105007,106065 /DEF=Farnesyl pyrophosphate synthetase, has both dimethylallyltranstransferase and geranyltranstransferase activities; catalyzes the formation of C15 farnesyl pyrophosphate units for isoprenoid and sterol biosynthesis /NOTE=Erg20p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: dimethylallyltranstransferase activity [goid GO:0004161] [evidence TAS]; go_function: dimethylallyltranstransferase activity [goid GO:0004161] [evidence IDA] [pmid 2681213]; go_function: geranyltranstransferase activity [goid GO:0004337] [evidence TAS]; go_function: geranyltranstransferase activity [goid GO:0004337] [evidence IDA] [pmid 2681213]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence TAS]; go_process: farnesyl diphosphate biosynthesis [goid GO:0045337] [evidence IDA] [pmid 2681213]; go_process: isoprenoid biosynthesis [goid GO:0008299] [evidence IDA] [pmid 2681213] --- --- --- --- scop // a.4.5.Plant O-methyltransferase, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Plant O-methyltransferase, N-terminal domain // 1.79999995231628 --- S0003703 // ERG20 SGDID:S0003703, Chr X from 105007-106065, Verified ORF // sgd // 11 // --- /// GENSCAN00000024011 // cdna:Genscan chromosome:SGD1:X:105007:106065:1 // ensembl // 11 // --- /// GENEFINDER00000024369 // cdna:GeneFinder chromosome:SGD1:X:105007:106065:1 // ensembl // 11 // --- /// YJL167W // cdna:known chromosome:SGD1:X:105007:106065:1 gene:YJL167W // ensembl // 11 // --- --- No cerevisiae_gene -1.2881765553291 -1.15560278791151 -1.53987810276498 -1.20326341465275 -1.25759707556776 Max fold change below threshold 4 1.53987810276498 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770885_at YDR387C.S1 Hypothetical protein 1.53987793463724 551.885314941406 729.710357666016 --- --- --- 15646 // permease activity // traceable author statement 737.554443359375 478.969421386719 624.801208496094 721.866271972656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR387C /GEN=MUS81 /DB_XREF=GI:6320595 /SEG=NC_001136:-1248142,1249809 /DEF=Hypothetical ORF /NOTE=Ydr387cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: permease activity [goid GO:0015646] [evidence TAS] [pmid 10618490]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002795 // span:43-65,85-104,111-133,137-159,166-188,198-220,348-370,385-407,414-436,441-463,475-497,507-526 // numtm:12 S0002795 // YDR387C SGDID:S0002795, Chr IV from 1249811-1248144, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023591 // cdna:GeneFinder chromosome:SGD1:IV:1248144:1249433:-1 // ensembl // 11 // --- /// YDR387C // cdna:known chromosome:SGD1:IV:1248144:1249811:-1 gene:YDR387C // ensembl // 11 // --- --- No cerevisiae_gene -1.48318702356248 -1.53987793463724 1.04409011450757 -1.1804625748639 -1.02173279455743 Max fold change below threshold 4 1.53987793463724 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775482_at YHR007C.S1 Lanosterol 14-alpha-demethylase, catalyzes the C-14 demethylation of lanosterol to form 4,4''-dimethyl cholesta-8,14,24-triene-3-beta-ol in the ergosterol biosynthesis pathway; member of the cytochrome P450 family 1.53973969864695 4097.80505371094 4888.88452148438 ERG11 6696 // ergosterol biosynthesis // traceable author statement 5783 // endoplasmic reticulum // traceable author statement /// 5783 // endoplasmic reticulum // inferred from direct assay 8398 // sterol 14-demethylase activity // traceable author statement 5455.779296875 4652.29736328125 3543.31274414063 4321.98974609375 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR007C /GEN=ERG11 /DB_XREF=GI:6321795 /SEG=NC_001140:-120085,121677 /DEF=Lanosterol 14-alpha-demethylase, catalyzes the C-14 demethylation of lanosterol to form 4,4''-dimethyl cholesta-8,14,24-triene-3-beta-ol in the ergosterol biosynthesis pathway; member of the cytochrome P450 family /NOTE=Erg11p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11914276]; go_function: sterol 14-demethylase activity [goid GO:0008398] [evidence TAS]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence TAS] --- --- --- p450 // CP12_MOUSE // Animalia; CYP1A-2; mou; CP12_MOUSE; Mus musculus; P00186 // 1.0E-174 --- S0001049 // span:29-51,58-80 // numtm:2 S0001049 // ERG11 SGDID:S0001049, Chr VIII from 121677-120085, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016559 // cdna:Genscan chromosome:SGD1:VIII:120085:121677:-1 // ensembl // 11 // --- /// GENEFINDER00000020113 // cdna:GeneFinder chromosome:SGD1:VIII:120085:121677:-1 // ensembl // 11 // --- /// YHR007C // cdna:known chromosome:SGD1:VIII:120085:121677:-1 gene:YHR007C // ensembl // 11 // --- --- No cerevisiae_gene -1.22709093165437 -1.17270648689297 -1.28944550467537 -1.53973969864695 -1.26233045828162 Max fold change below threshold 4 1.53973969864695 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778084_at YNL122C.S1 Hypothetical protein 1.53956656031544 141.662879943848 177.249954223633 --- --- 5739 // mitochondrion // inferred from direct assay --- 157.067352294922 111.318374633789 172.007385253906 197.432556152344 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL122C /GEN=NAF1 /DB_XREF=GI:6324207 /SEG=NC_001146:-398023,398370 /DEF=Hypothetical ORF /NOTE=Ynl122cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005066 // YNL122C SGDID:S0005066, Chr XIV from 398370-398023, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// YNL122C // cdna:known chromosome:SGD1:XIV:398023:398370:-1 gene:YNL122C // ensembl // 10 // --- --- No cerevisiae_gene -1.14221206337314 -1.41097417934493 1.53956656031544 1.09511864012918 1.25699296045705 Max fold change below threshold 4 1.53956656031544 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777042_at YDR513W.S1 Cytoplasmic glutaredoxin, thioltransferase, glutathione-dependent disulfide oxidoreductase involved in maintaining redox state of target proteins, also exhibits glutathione peroxidase activity, expression induced in response to stress 1.53954590452881 5748.77587890625 5533.17163085938 TTR1 6979 // response to oxidative stress // inferred from mutant phenotype /// 30503 // regulation of cell redox homeostasis // inferred from mutant phenotype /// 30503 // regulation of cell redox homeostasis // inferred from direct assay 5739 // mitochondrion // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 4364 // glutathione transferase activity // inferred from direct assay /// 4602 // glutathione peroxidase activity // inferred from direct assay /// 30508 // thiol-disulfide exchange intermediate activity // inferred from mutant phenotype /// 30508 // thiol-disulfide exchange intermediate activity // inferred from sequence similarity 6491.70654296875 7167.92041015625 4329.63134765625 4574.63671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR513W /GEN=TTR1 /DB_XREF=GI:6320720 /SEG=NC_001136:+1471005,1471436 /DEF=Glutaredoxin (thioltransferase) (glutathione reductase) /NOTE=Ttr1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 11958675]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11958675]; go_function: glutathione peroxidase activity [goid GO:0004602] [evidence IDA] [pmid 12684511]; go_function: glutathione transferase activity [goid GO:0004364] [evidence IDA] [pmid 12684511]; go_function: thiol-disulfide exchange intermediate activity [goid GO:0030508] [evidence IMP,ISS] [pmid 9571241]; go_process: regulation of cell redox homeostasis [goid GO:0030503] [evidence IDA,IMP] [pmid 9571241]; go_process: response to oxidative stress [goid GO:0006979] [evidence IMP] [pmid 9571241] --- --- --- --- --- S0002921 // span:7-26 // numtm:1 S0002921 // TTR1 SGDID:S0002921, Chr IV from 1471007-1471438, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023540 // cdna:GeneFinder chromosome:SGD1:IV:1471109:1471438:1 // ensembl // 9 // --- /// YDR513W // cdna:known chromosome:SGD1:IV:1471007:1471438:1 gene:YDR513W // ensembl // 11 // --- S0002920 // sgd // 1 // Negative Strand Matching Probes /// YDR512C // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene -1.53954590452881 1.10416580951582 -1.32830814795987 -1.49936704114148 -1.41906493172699 Max fold change below threshold 4 1.53954590452881 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779278_at YBL046W.S1 Hypothetical protein 1.53949115102643 600.451141357422 870.899597167969 --- --- 5634 // nucleus // inferred from direct assay --- 836.586120605469 543.417297363281 657.484985351563 905.213073730469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL046W /GEN=EDE1 /DB_XREF=GI:6319425 /SEG=NC_001134:+132389,133714 /DEF=Hypothetical ORF /NOTE=Ybl046wp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000142 // YBL046W SGDID:S0000142, Chr II from 132427-133752, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021101 // cdna:Genscan chromosome:SGD1:II:132439:133752:1 // ensembl // 11 // --- /// GENEFINDER00000022354 // cdna:GeneFinder chromosome:SGD1:II:132439:133752:1 // ensembl // 11 // --- /// YBL046W // cdna:known chromosome:SGD1:II:132427:133752:1 gene:YBL046W // ensembl // 11 // --- --- No cerevisiae_gene -1.08552622408747 -1.53949115102643 -1.02815389558062 -1.27240338447902 1.08203214401326 Max fold change below threshold 4 1.53949115102643 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779388_at YJR117W.S1 Highly conserved zinc metalloprotease that functions in two steps of a-factor maturation, C-terminal CAAX proteolysis and the first step of N-terminal proteolytic processing; contains multiple transmembrane spans 1.53924678921058 2118.43981933594 1467.73004150391 STE24 7323 // peptide pheromone maturation // inferred from direct assay /// 7323 // peptide pheromone maturation // inferred from mutant phenotype 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay 4222 // metalloendopeptidase activity // inferred from direct assay /// 4222 // metalloendopeptidase activity // inferred from sequence similarity /// 8487 // prenyl-dependent CAAX protease activity // inferred from direct assay 1464.11291503906 1983.24853515625 2253.63110351563 1471.34716796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR117W /GEN=STE24 /DB_XREF=GI:6322577 /SEG=NC_001142:+641922,643283 /DEF=zinc metallo-protease that catalyzes the first step of N-terminal processing of the yeast a-factor precursor /NOTE=Ste24p; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA] [pmid 11581258]; go_function: metalloendopeptidase activity [goid GO:0004222] [evidence IDA] [pmid 11581258]; go_function: prenyl-dependent CAAX protease activity [goid GO:0008487] [evidence IDA] [pmid 11581258]; go_process: peptide pheromone maturation [goid GO:0007323] [evidence IDA] [pmid 11581258] --- --- --- --- --- S0003878 // span:124-146,161-183,195-217,307-329 // numtm:4 S0003878 // STE24 SGDID:S0003878, Chr X from 641922-643283, Verified ORF // sgd // 11 // --- /// GENSCAN00000024225 // cdna:Genscan chromosome:SGD1:X:641922:643283:1 // ensembl // 11 // --- /// GENEFINDER00000024421 // cdna:GeneFinder chromosome:SGD1:X:641922:643283:1 // ensembl // 11 // --- /// YJR117W // cdna:known chromosome:SGD1:X:641922:643283:1 gene:YJR117W // ensembl // 11 // --- --- No cerevisiae_gene 1.17081455556201 1.35457348595503 -1.53751430201458 1.53924678921058 1.00494104850478 Max fold change below threshold 4 1.53924678921058 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772449_at SPCC1827.06c.S1 --- 1.53890851745416 --- --- --- --- 11.2179136276245 16.3491840362549 15.6052570343018 7.71902751922607 0.0561522990465164 0.0239257998764515 0.00805663969367743 0.000244141003349796 M P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC1827.06c /DEF=aspartate semialdehyde dehydrogenase --- --- --- --- --- --- D89129 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0499. // gb // 11 // --- /// SPCC1827.06c // |||aspartate semialdehyde dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.37460634206898 1.45741753582363 -1.53890851745416 1.39110154992398 -1.45328068849135 Max fold change below threshold 4 1.53890851745416 Max fold change below threshold MPPAPP No 3 0 MPPP 0 3 1 No No 2 < x = 3
1779907_at YML051W.S1 Transcriptional regulator involved in the repression of GAL genes in the absence of galactose; inhibits transcriptional activation by Gal4p; inhibition relieved by Gal3p or Gal1p binding 1.53884850026583 820.782867431641 777.984558105469 GAL80 6012 // galactose metabolism // traceable author statement /// 6355 // regulation of transcription, DNA-dependent // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3714 // transcription corepressor activity // traceable author statement 746.66552734375 798.315979003906 843.249755859375 809.303588867188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML051W /GEN=GAL80 /DB_XREF=GI:6323590 /SEG=NC_001145:+171594,172901 /DEF=Transcriptional regulator involved in the repression of GAL genes in the absence of galactose; inhibits transcriptional activation by Gal4p; inhibition relieved by Gal3p or Gal1p binding /NOTE=Gal80p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10866670]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10866670]; go_function: transcription corepressor activity [goid GO:0003714] [evidence TAS] [pmid 7601342]; go_process: galactose metabolism [goid GO:0006012] [evidence TAS] [pmid 7601342]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence TAS] [pmid 7601342] --- --- --- --- --- --- S0004515 // GAL80 SGDID:S0004515, Chr XIII from 171594-172901, Verified ORF // sgd // 11 // --- /// GENSCAN00000018674 // cdna:Genscan chromosome:SGD1:XIII:171594:172901:1 // ensembl // 11 // --- /// GENEFINDER00000022076 // cdna:GeneFinder chromosome:SGD1:XIII:171594:172901:1 // ensembl // 11 // --- /// YML051W // cdna:known chromosome:SGD1:XIII:171594:172901:1 gene:YML051W // ensembl // 11 // --- --- No cerevisiae_gene 1.53884850026583 1.06917481759725 1.00358454025089 1.12935407485494 1.08389038897546 Max fold change below threshold 4 1.53884850026583 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777790_at YDR280W.S1 Protein involved in rRNA processing; component of the exosome 3->5 exonuclease complex 1.53865836219226 631.120635986328 573.758544921875 RRP45 6365 // 35S primary transcript processing // traceable author statement /// 6402 // mRNA catabolism // inferred from physical interaction 176 // nuclear exosome (RNase complex) // inferred from direct assay /// 177 // cytoplasmic exosome (RNase complex) // inferred from direct assay 175 // 3'-5'-exoribonuclease activity // traceable author statement 526.216857910156 609.966674804688 652.274597167969 621.300231933594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR280W /GEN=RRP45 /DB_XREF=GI:6320486 /SEG=NC_001136:+1020739,1021656 /DEF=Ribosomal RNA Processing /NOTE=Rrp45p; go_component: cytoplasmic exosome (RNase complex) [goid GO:0000177] [evidence IDA] [pmid 10465791]; go_component: nuclear exosome (RNase complex) [goid GO:0000176] [evidence IDA] [pmid 10465791]; go_function: 3'-5'-exoribonuclease activity [goid GO:0000175] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: mRNA catabolism [goid GO:0006402] [evidence IPI] [pmid 10465791] --- --- --- --- --- --- S0002688 // RRP45 SGDID:S0002688, Chr IV from 1020741-1021658, Verified ORF // sgd // 11 // --- /// GENSCAN00000025316 // cdna:Genscan chromosome:SGD1:IV:1020741:1021658:1 // ensembl // 11 // --- /// GENEFINDER00000023747 // cdna:GeneFinder chromosome:SGD1:IV:1020891:1021658:1 // ensembl // 11 // --- /// YDR280W // cdna:known chromosome:SGD1:IV:1020741:1021658:1 gene:YDR280W // ensembl // 11 // --- --- No cerevisiae_gene 1.53865836219226 1.15915456837916 1.49540354579468 1.23955473368612 1.18069237538504 Max fold change below threshold 4 1.53865836219226 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774653_at YNL100W.S1 Hypothetical protein 1.53860384515053 3182.177734375 3179.50854492188 --- --- 5739 // mitochondrion // inferred from direct assay --- 3497.70068359375 3614.11767578125 2750.23779296875 2861.31640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL100W /GEN=AVT4 /DB_XREF=GI:6324229 /SEG=NC_001146:+437613,438317 /DEF=Hypothetical ORF /NOTE=Ynl100wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005044 // YNL100W SGDID:S0005044, Chr XIV from 437613-438317, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019953 // cdna:Genscan chromosome:SGD1:XIV:437613:438317:1 // ensembl // 11 // --- /// GENEFINDER00000020613 // cdna:GeneFinder chromosome:SGD1:XIV:437613:438317:1 // ensembl // 11 // --- /// YNL100W // cdna:known chromosome:SGD1:XIV:437613:438317:1 gene:YNL100W // ensembl // 11 // --- --- No cerevisiae_gene -1.53860384515053 1.03328386352027 1.09249331068639 -1.27178118653447 -1.22240961396429 Max fold change below threshold 4 1.53860384515053 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776975_at YPL236C.S1 Hypothetical protein 1.5385277221976 450.406051635742 679.799133300781 --- --- 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay 4672 // protein kinase activity // inferred from sequence similarity 636.623596191406 413.787536621094 487.024566650391 722.974670410156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL236C /GEN=SUI3 /DB_XREF=GI:6325020 /SEG=NC_001148:-101608,102702 /DEF=Hypothetical ORF /NOTE=Ypl236cp; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14562095]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 9817935]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 4.0E-36 /// hanks // 2.1.9 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DUN1 // 7.0E-44 --- --- S0006157 // YPL236C SGDID:S0006157, Chr XVI from 102702-101608, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017004 // cdna:Genscan chromosome:SGD1:XVI:101608:102582:-1 // ensembl // 11 // --- /// YPL236C // cdna:known chromosome:SGD1:XVI:101608:102702:-1 gene:YPL236C // ensembl // 11 // --- --- No cerevisiae_gene -1.43927072489814 -1.5385277221976 1.43761821767651 -1.30716937046916 1.13563913548814 Max fold change below threshold 4 1.5385277221976 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776390_at YBL022C.S1 Mitochondrial ATP-dependent protease involved in intramitochondrial proteolysis; involved in degradation of misfolded proteins in mitochondria; required for bigenesis and maintenance of mitochondria 1.53845945535727 1509.90014648438 1758.50103759766 PIM1 6508 // proteolysis and peptidolysis // inferred from genetic interaction /// 9408 // response to heat // inferred from expression pattern 5759 // mitochondrial matrix // inferred from sequence similarity /// 5759 // mitochondrial matrix // inferred from direct assay /// 5759 // mitochondrial matrix // inferred from mutant phenotype 4176 // ATP-dependent peptidase activity // inferred from direct assay 1719.861328125 1341.21643066406 1678.58386230469 1797.14074707031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL022C /GEN=PIM1 /DB_XREF=GI:6319449 /SEG=NC_001134:-177839,181240 /DEF=mitochondrial ATP-dependent protease /NOTE=Pim1p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA,IMP,ISS] [pmid 8276800]; go_function: ATP-dependent peptidase activity [goid GO:0004176] [evidence IDA] [pmid 8276800]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence IGI] [pmid 7957078]; go_process: response to heat [goid GO:0009408] [evidence IEP] [pmid 8276800] --- --- --- --- --- --- S0000118 // PIM1 SGDID:S0000118, Chr II from 181278-177877, reverse complement, Verified ORF // sgd // 11 // --- /// L28110 // Saccharomyces cerevisiae (LON) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000021120 // cdna:Genscan chromosome:SGD1:II:177877:181278:-1 // ensembl // 11 // --- /// GENEFINDER00000022120 // cdna:GeneFinder chromosome:SGD1:II:177877:181278:-1 // ensembl // 11 // --- /// YBL022C // cdna:known chromosome:SGD1:II:177877:181278:-1 gene:YBL022C // ensembl // 11 // --- --- No cerevisiae_gene -1.53845945535727 -1.28231453835789 1.27700058144223 -1.0245906485504 1.04493351741885 Max fold change below threshold 4 1.53845945535727 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778401_at YGL174W.S1 Protein involved in bud-site selection; diploid mutants display a unipolar budding pattern instead of the wild-type bipolar pattern 1.53835089264578 191.837326049805 230.83927154541 BUD13 282 // bud site selection // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 199.87971496582 159.244689941406 224.429962158203 261.798828125 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL174W /GEN=BUD13 /DB_XREF=GI:6321264 /SEG=NC_001139:+174549,175349 /DEF=Protein involved in bud-site selection; diploid mutants display a unipolar budding pattern instead of the wild-type bipolar pattern /NOTE=Bud13p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11452010]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: bud site selection [goid GO:0000282] [evidence IMP] [pmid 11452010] --- --- --- --- --- --- S0003142 // BUD13 SGDID:S0003142, Chr VII from 174551-175351, Verified ORF // sgd // 11 // --- /// GENSCAN00000019218 // cdna:Genscan chromosome:SGD1:VII:174551:175351:1 // ensembl // 11 // --- /// GENEFINDER00000021462 // cdna:GeneFinder chromosome:SGD1:VII:174551:175351:1 // ensembl // 11 // --- /// YGL174W // cdna:known chromosome:SGD1:VII:174551:175351:1 gene:YGL174W // ensembl // 11 // --- --- No cerevisiae_gene 1.06070408098376 -1.25517350085184 1.53835089264578 1.12282510607232 1.30978187641386 Max fold change below threshold 4 1.53835089264578 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775050_at YOR127W.S1 GTPase-activating protein for the polarity-establishment protein Cdc42p; implicated in control of septin organization, pheromone response, and haploid invasive growth 1.53820733900365 351.371566772461 526.082458496094 RGA1 750 // signal transduction during conjugation with cellular fusion // inferred from genetic interaction /// 1403 // invasive growth (sensu Saccharomyces) // inferred from physical interaction /// 7015 // actin filament organization // inferred from mutant phenotype /// 7118 // budding cell apical bud growth // inferred from physical interaction /// 7119 // budding cell isotropic bud growth // inferred from physical interaction /// 7124 // pseudohyphal growth // inferred from physical interaction /// 7264 // small GTPase mediated signal transduction // inferred from physical interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction 5622 // intracellular // traceable author statement 4871 // signal transducer activity // inferred from physical interaction /// 5100 // Rho GTPase activator activity // inferred from physical interaction /// 5100 // Rho GTPase activator activity // inferred from sequence similarity 482.919555664063 313.949584960938 388.793548583984 569.245361328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR127W /GEN=RGA1 /DB_XREF=GI:6324701 /SEG=NC_001147:+561170,564193 /DEF=putative GTPase-activating protein for the polarity-establishment protein Cdc42p or Rho1p; activates the pheromone-response pathway /NOTE=Rga1p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 9891811]; go_function: Rho GTPase activator activity [goid GO:0005100] [evidence IPI,ISS] [pmid 9891811]; go_function: signal transducer activity [goid GO:0004871] [evidence IPI] [pmid 9891811]; go_process: actin filament organization [goid GO:0007015] [evidence IMP] [pmid 8657111]; go_process: apical bud growth [goid GO:0007118] [evidence IPI] [pmid 10066831]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IPI] [pmid 9891811]; go_process: invasive growth (sensu Saccharomyces) [goid GO:0001403] [evidence IPI] [pmid 10066831]; go_process: isotropic bud growth [goid GO:0007119] [evidence IPI] [pmid 10066831]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IPI] [pmid 10066831]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence IGI] [pmid 7498791]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence IPI] [pmid 9891811] --- --- --- --- scop // a.2.5.Prefoldin // All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin // 6.80000019073486 --- S0005653 // RGA1 SGDID:S0005653, Chr XV from 561170-564193, Verified ORF // sgd // 11 // --- /// GENSCAN00000017555 // cdna:Genscan chromosome:SGD1:XV:561170:564193:1 // ensembl // 11 // --- /// GENEFINDER00000022848 // cdna:GeneFinder chromosome:SGD1:XV:561170:564193:1 // ensembl // 11 // --- /// YOR127W // cdna:known chromosome:SGD1:XV:561170:564193:1 gene:YOR127W // ensembl // 11 // --- --- No cerevisiae_gene -1.19836091892743 -1.53820733900365 -1.00926755414662 -1.24209765677155 1.17875814853958 Max fold change below threshold 4 1.53820733900365 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775971_at YLR088W.S1 Subunit of the GPI (glycosylphosphatidylinositol):protein transamidase complex, removes the GPI-anchoring signal and attaches GPI to proteins in the ER 1.538066145126 190.838874816895 299.514068603516 GAA1 16255 // attachment of GPI anchor to protein // inferred from mutant phenotype 42765 // GPI-anchor transamidase complex // inferred from physical interaction 3923 // GPI-anchor transamidase activity // inferred from mutant phenotype /// 3923 // GPI-anchor transamidase activity // inferred from physical interaction 283.450988769531 194.233489990234 187.444259643555 315.5771484375 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR088W /GEN=GAA1 /DB_XREF=GI:6323117 /SEG=NC_001144:+316108,317952 /DEF=Subunit of the GPI:protein transamidase complex, removes the GPI-anchoring signal and attaches GPI (glycosylphosphatidylinositol) to proteins in the ER /NOTE=Gaa1p; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA] [pmid 11598210]; go_function: GPI-anchor transamidase activity [goid GO:0003923] [evidence IMP,IPI] [pmid 11598210]; go_process: attachment of GPI anchor to protein [goid GO:0016255] [evidence IMP] [pmid 11598210] --- --- --- --- --- S0004078 // span:20-42,351-373,393-415,454-476,537-556,578-600 // numtm:6 S0004078 // GAA1 SGDID:S0004078, Chr XII from 316108-317952, Verified ORF // sgd // 11 // --- /// GENSCAN00000017887 // cdna:Genscan chromosome:SGD1:XII:316108:317952:1 // ensembl // 11 // --- /// YLR088W // cdna:known chromosome:SGD1:XII:316108:317952:1 gene:YLR088W // ensembl // 11 // --- --- No cerevisiae_gene 1.45191266867511 -1.45933118322583 1.538066145126 -1.51218815293967 1.11333938120107 Max fold change below threshold 4 1.538066145126 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772227_at YJL137C.S1 Self-glucosylating initiator of glycogen synthesis, also glucosylates n-dodecyl-beta-D-maltoside; similar to mammalian glycogenin 1.53799587850429 667.771224975586 792.854827880859 GLG2 5978 // glycogen biosynthesis // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay 8466 // glycogenin glucosyltransferase activity // inferred from genetic interaction /// 8466 // glycogenin glucosyltransferase activity // inferred from sequence similarity 729.952941894531 474.613067626953 860.929382324219 855.756713867188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL137C /GEN=GLG2 /DB_XREF=GI:6322324 /SEG=NC_001142:-154903,156045 /DEF=self-glucosylating initiator of glycogen synthesis; similar to mammalian glycogenin /NOTE=Glg2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: glycogenin glucosyltransferase activity [goid GO:0008466] [evidence IGI,ISS] [pmid 8524228]; go_process: glycogen biosynthesis [goid GO:0005978] [evidence IGI] [pmid 8524228] --- --- --- --- --- --- S0003673 // GLG2 SGDID:S0003673, Chr X from 156045-154903, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024034 // cdna:Genscan chromosome:SGD1:X:154903:156045:-1 // ensembl // 11 // --- /// GENEFINDER00000024300 // cdna:GeneFinder chromosome:SGD1:X:154903:156045:-1 // ensembl // 11 // --- /// YJL137C // cdna:known chromosome:SGD1:X:154903:156045:-1 gene:YJL137C // ensembl // 11 // --- --- No cerevisiae_gene -1.43459548309695 -1.53799587850429 1.31933135605699 1.17943134812191 1.17234504411496 Max fold change below threshold 4 1.53799587850429 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774057_at YLR345W.S1 Hypothetical protein 1.53793723410672 2207.00915527344 1515.44268798828 --- --- 5737 // cytoplasm // inferred from direct assay --- 1477.42553710938 2272.18774414063 2141.83056640625 1553.45983886719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR345W /GEN=RPL26A /DB_XREF=GI:6323377 /SEG=NC_001144:+820511,822040 /DEF=Hypothetical ORF /NOTE=Ylr345wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- ec // 6P21_YEAST // (P40433) 6-phosphofructo-2-kinase 1 (EC 2.7.1.105) (Phosphofructokinase 2 I) (6PF-2-K 1) // 0.0 --- --- S0004337 // YLR345W SGDID:S0004337, Chr XII from 820511-822040, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018082 // cdna:Genscan chromosome:SGD1:XII:820511:822040:1 // ensembl // 11 // --- /// GENEFINDER00000024829 // cdna:GeneFinder chromosome:SGD1:XII:820511:822040:1 // ensembl // 11 // --- /// YLR345W // cdna:known chromosome:SGD1:XII:820511:822040:1 gene:YLR345W // ensembl // 11 // --- --- No cerevisiae_gene -1.42551853039701 1.53793723410672 1.13923054233347 1.44970457908613 1.05146405003028 Max fold change below threshold 4 1.53793723410672 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774489_at YDR248C.S1 Hypothetical protein 1.53791474285647 611.669708251953 783.859985351563 --- --- 5737 // cytoplasm // inferred from direct assay --- 760.181945800781 729.045471191406 494.2939453125 807.538024902344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR248C /GEN=VHS1 /DB_XREF=GI:6320454 /SEG=NC_001136:-957750,958331 /DEF=Hypothetical ORF /NOTE=Ydr248cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002656 // YDR248C SGDID:S0002656, Chr IV from 958333-957752, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025291 // cdna:Genscan chromosome:SGD1:IV:957752:958312:-1 // ensembl // 11 // --- /// YDR248C // cdna:known chromosome:SGD1:IV:957752:958333:-1 gene:YDR248C // ensembl // 11 // --- --- No cerevisiae_gene 1.04149164407903 -1.04270854952091 1.12365822037908 -1.53791474285647 1.06229571665462 Max fold change below threshold 4 1.53791474285647 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780160_at YMR252C.S1 Hypothetical protein 1.53783265275359 1665.53814697266 1159.78332519531 --- --- 5739 // mitochondrion // inferred from direct assay --- 1112.67370605469 1711.10595703125 1619.97033691406 1206.89294433594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR252C /GEN=HOR7 /DB_XREF=GI:6323908 /SEG=NC_001145:-775314,775718 /DEF=Hypothetical ORF /NOTE=Ymr252cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004865 // YMR252C SGDID:S0004865, Chr XIII from 775718-775314, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YMR252C // cdna:known chromosome:SGD1:XIII:775314:775718:-1 gene:YMR252C // ensembl // 11 // --- --- No cerevisiae_gene 1.34871771579732 1.53783265275359 -1.18600414547413 1.45592578318234 1.08467822845867 Max fold change below threshold 4 1.53783265275359 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775443_at YHR033W.S1 Hypothetical protein 1.53647400195114 6603.15356445313 4693.2529296875 --- --- 5737 // cytoplasm // inferred from direct assay --- 5165.75537109375 7937.048828125 5269.25830078125 4220.75048828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR033W /GEN=RRM3 /DB_XREF=GI:6321822 /SEG=NC_001140:+175540,176811 /DEF=Hypothetical ORF /NOTE=Yhr033wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001075 // YHR033W SGDID:S0001075, Chr VIII from 175540-176811, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020127 // cdna:GeneFinder chromosome:SGD1:VIII:173336:176811:1 // ensembl // 11 // --- /// GENSCAN00000016581 // cdna:Genscan chromosome:SGD1:VIII:175540:176811:1 // ensembl // 11 // --- /// YHR033W // cdna:known chromosome:SGD1:VIII:175540:176811:1 gene:YHR033W // ensembl // 11 // --- --- No cerevisiae_gene -1.16083970026004 1.53647400195114 -1.27359751700979 1.02003635910958 -1.22389498868419 Max fold change below threshold 4 1.53647400195114 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778143_at YBR087W.S1 Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon 1.53631634935424 372.305114746094 531.781555175781 RFC5 6272 // leading strand elongation // inferred from direct assay /// 6298 // mismatch repair // traceable author statement /// 7062 // sister chromatid cohesion // inferred from physical interaction 5663 // DNA replication factor C complex // inferred from direct assay /// 5663 // DNA replication factor C complex // inferred from mutant phenotype 3689 // DNA clamp loader activity // inferred from direct assay 502.046081542969 326.785614013672 417.824615478516 561.517028808594 0.000732421991415322 0.00122069998178631 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR087W /GEN=RFC5 /DB_XREF=GI:6319562 /SEG=NC_001134:+423722,424786 /DEF=RFC is a multisubunit DNA binding protein and ATPase that acts as a processivity factor for DNA polymerases delta and epsilon and loads proliferating cell nuclear antigen (PCNA) on DNA /NOTE=Rfc5p; go_component: DNA replication factor C complex [goid GO:0005663] [evidence IDA] [pmid 7651383]; go_component: DNA replication factor C complex [goid GO:0005663] [evidence IMP] [pmid 8559655]; go_function: DNA clamp loader activity [goid GO:0003689] [evidence IDA] [pmid 12604797]; go_process: leading strand elongation [goid GO:0006272] [evidence IDA] [pmid 1346062]; go_process: mismatch repair [goid GO:0006298] [evidence TAS] [pmid 10072354]; go_process: sister chromatid cohesion [goid GO:0007062] [evidence IPI] [pmid 11389843] --- --- --- --- --- --- S0000291 // RFC5 SGDID:S0000291, Chr II from 423759-424823, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022404 // cdna:GeneFinder chromosome:SGD1:II:423759:424823:1 // ensembl // 11 // --- /// GENSCAN00000021210 // cdna:Genscan chromosome:SGD1:II:424059:424823:1 // ensembl // 11 // --- /// YBR087W // cdna:known chromosome:SGD1:II:423759:424823:1 gene:YBR087W // ensembl // 11 // --- --- No cerevisiae_gene 1.10182392049721 -1.53631634935424 -1.06270133518479 -1.20157133626031 1.11845714856064 Max fold change below threshold 4 1.53631634935424 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769802_at YML010W.S1 Protein that forms a complex with Spt4p and mediates both activation and inhibition of transcription elongation; Spt4p-Spt5p complex also plays a role in pre-mRNA processing 1.53624096852486 594.353546142578 577.164031982422 SPT5 6325 // establishment and/or maintenance of chromatin architecture // traceable author statement /// 6355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 6355 // regulation of transcription, DNA-dependent // inferred from physical interaction /// 6355 // regulation of transcription, DNA-dependent // inferred from genetic interaction /// 6368 // RNA elongation from RNA polymerase II promoter // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 8023 // transcription elongation factor complex // inferred from physical interaction 16944 // RNA polymerase II transcription elongation factor activity // inferred from mutant phenotype /// 16944 // RNA polymerase II transcription elongation factor activity // inferred from genetic interaction /// 16944 // RNA polymerase II transcription elongation factor activity // inferred from physical interaction 585.4794921875 381.111755371094 807.595336914063 568.848571777344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML010W /GEN=SPT5 /DB_XREF=GI:6323632 /SEG=NC_001145:+247677,250868 /DEF=Protein that forms a complex with Spt4p and mediates both activation and inhibition of transcription elongation; Spt4p-Spt5p complex also plays a role in pre-mRNA processing /NOTE=Spt5p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 1840633]; go_component: transcription elongation factor complex [goid GO:0008023] [evidence IPI] [pmid 12242279]; go_function: Pol II transcription elongation factor activity [goid GO:0016944] [evidence IGI,IMP,IPI] [pmid 9450930]; go_process: RNA elongation from Pol II promoter [goid GO:0006368] [evidence IPI] [pmid 12242279]; go_process: establishment and/or maintenance of chromatin architecture [goid GO:0006325] [evidence TAS] [pmid 8805244]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence IGI,IMP,IPI] [pmid 9450930] --- --- --- --- --- --- S0004470 // SPT5 SGDID:S0004470, Chr XIII from 247677-250868, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021797 // cdna:GeneFinder chromosome:SGD1:XIII:247677:250868:1 // ensembl // 11 // --- /// GENSCAN00000018709 // cdna:Genscan chromosome:SGD1:XIII:247707:250868:1 // ensembl // 11 // --- /// YML010W // cdna:known chromosome:SGD1:XIII:247677:250868:1 gene:YML010W // ensembl // 11 // --- YML009W-B // ensembl // 4 // Cross Hyb Matching Probes /// YML009C-A // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene -1.08782064497897 -1.53624096852486 1.00991076775012 1.37937425254074 -1.02923611174446 Max fold change below threshold 4 1.53624096852486 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774979_at YER078C.S1 Metallopeptidase, localized to the mitochondrial matrix 1.53617645064144 430.784088134766 436.133544921875 --- 6508 // proteolysis and peptidolysis // non-traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5759 // mitochondrial matrix // non-traceable author statement 4222 // metalloendopeptidase activity // non-traceable author statement /// 8451 // X-Pro aminopeptidase activity // inferred from sequence similarity 399.586669921875 387.673400878906 473.894775390625 472.680419921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER078C /GEN=PTP3 /DB_XREF=GI:6320922 /SEG=NC_001137:-316803,318338 /DEF=Hypothetical ORF /NOTE=Yer078cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: X-Pro aminopeptidase activity [goid GO:0008451] [evidence ISS] [pmid 10592175]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.3.1.Two-domain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; Two-domain cytochrome c // 1.39999997615814 --- S0000880 // YER078C SGDID:S0000880, Chr V from 318338-316803, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016868 // cdna:Genscan chromosome:SGD1:V:316803:317969:-1 // ensembl // 11 // --- /// GENEFINDER00000019742 // cdna:GeneFinder chromosome:SGD1:V:316803:317921:-1 // ensembl // 11 // --- /// YER078C // cdna:known chromosome:SGD1:V:316803:318338:-1 gene:YER078C // ensembl // 11 // --- --- No cerevisiae_gene 1.53617645064144 -1.0307301687863 1.16769327069537 1.18596242332928 1.1829233943522 Max fold change below threshold 4 1.53617645064144 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770460_at YPL097W.S1 Mitochondrial tyrosyl-tRNA synthetase 1.53609573249875 509.848236083984 634.404235839844 MSY1 6437 // tyrosyl-tRNA aminoacylation // traceable author statement 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 4831 // tyrosine-tRNA ligase activity // traceable author statement 637.965759277344 415.31640625 604.380065917969 630.842712402344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL097W /GEN=MSY1 /DB_XREF=GI:6325160 /SEG=NC_001148:+364947,366425 /DEF=Tyrosyl-tRNA synthetase /NOTE=Msy1p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 3315228]; go_function: tyrosine-tRNA ligase activity [goid GO:0004831] [evidence TAS] [pmid 3315228]; go_process: tyrosyl-tRNA aminoacylation [goid GO:0006437] [evidence TAS] [pmid 3315228] --- --- --- --- --- --- S0006018 // MSY1 SGDID:S0006018, Chr XVI from 364949-366427, Verified ORF // sgd // 11 // --- /// YPL097W // cdna:known chromosome:SGD1:XVI:364949:366427:1 gene:YPL097W // ensembl // 11 // --- --- No cerevisiae_gene -1.05923860787817 -1.53609573249875 1.24368560768304 -1.05557048495364 -1.01129131990425 Max fold change below threshold 4 1.53609573249875 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779782_at YOR369C.S1 Protein component of the small (40S) ribosomal subunit; has similarity to rat ribosomal protein S12 1.53554595566011 4689.71850585938 5128.30688476563 RPS12 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 5845.12353515625 5359.98779296875 4019.44921875 4411.490234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR369C /GEN=RPS12 /DB_XREF=GI:6324945 /SEG=NC_001147:-1028190,1028621 /DEF=Protein component of the small (40S) ribosomal subunit; has similarity to rat ribosomal protein S12 /NOTE=Rps12p; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0005896 // RPS12 SGDID:S0005896, Chr XV from 1028621-1028190, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017817 // cdna:Genscan chromosome:SGD1:XV:1028190:1028621:-1 // ensembl // 11 // --- /// GENEFINDER00000022591 // cdna:GeneFinder chromosome:SGD1:XV:1028190:1028621:-1 // ensembl // 11 // --- /// YOR369C // cdna:known chromosome:SGD1:XV:1028190:1028621:-1 gene:YOR369C // ensembl // 11 // --- U24143 // gb // 6 // Cross Hyb Matching Probes No cerevisiae_gene -1.16454972002604 -1.09051060579353 -1.53554595566011 -1.45421007134256 -1.32497709948674 Max fold change below threshold 4 1.53554595566011 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775274_at YDL220C.S1 Single stranded DNA-binding protein found at TG1-3 telomere G-tails; regulates telomere replication through recruitment of specific sub-complexes, but the essential function is telomere capping 1.53497777526874 52.5128364562988 73.0804176330566 CDC13 723 // telomere maintenance // inferred from mutant phenotype /// 16233 // telomere capping // traceable author statement 783 // nuclear telomere cap complex // inferred from direct assay 3697 // single-stranded DNA binding // traceable author statement 64.6191482543945 42.0977745056152 62.9278984069824 81.5416870117188 0.0561522990465164 0.129638999700546 0.111571997404099 0.030273400247097 M A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL220C /GEN=CDC13 /DB_XREF=GI:6319981 /SEG=NC_001136:-62245,65019 /DEF=Single stranded DNA-binding protein found at TG1-3 telomere G-tails; regulates telomere replication through recruitment of specific sub-complexes, but the essential function is telomere capping /NOTE=Cdc13p; go_component: nuclear telomere cap complex [goid GO:0000783] [evidence IDA] [pmid 9710643]; go_function: single-stranded DNA binding [goid GO:0003697] [evidence TAS] [pmid 11352055]; go_process: telomere capping [goid GO:0016233] [evidence TAS] [pmid 11352055]; go_process: telomere maintenance [goid GO:0000723] [evidence IMP] [pmid 11390652] --- --- --- --- --- --- S0002379 // CDC13 SGDID:S0002379, Chr IV from 65019-62245, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023748 // cdna:GeneFinder chromosome:SGD1:IV:62245:64443:-1 // ensembl // 11 // --- /// GENSCAN00000024938 // cdna:Genscan chromosome:SGD1:IV:62245:65019:-1 // ensembl // 11 // --- /// YDL220C // cdna:known chromosome:SGD1:IV:62245:65019:-1 gene:YDL220C // ensembl // 11 // --- YDL221W // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene -1.18540311911174 -1.53497777526874 1.38182210808546 -1.02687599443531 1.2618811794099 Max fold change below threshold 4 1.53497777526874 Max fold change below threshold MMAPAP No 4 0 MAAP 2 1 1 No No x = 1
1777035_at YIL148W.S1 Fusion protein, identical to Rpl40Ap, that is cleaved to yield ubiquitin and a ribosomal protein of the large (60S) ribosomal subunit with similarity to rat L40; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes /// Fusion protein, identical to Rpl40Bp, that is cleaved to yield ubiquitin and a ribosomal protein of the large (60S) ribosomal subunit with similarity to rat L40; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes 1.53445389138095 4823.61169433594 5181.73779296875 RPL40B /// RPL40A 6412 // protein biosynthesis // traceable author statement /// 16567 // protein ubiquitination // inferred from mutant phenotype /// 42254 // ribosome biogenesis and assembly // inferred from direct assay 5739 // mitochondrion // inferred from direct assay /// 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement /// 31386 // protein tag // inferred from sequence similarity 6011.4580078125 5729.5703125 3917.65307617188 4352.017578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL148W /GEN=RPL40A /DB_XREF=GI:6322043 /SEG=NC_001141:+68708,69528 /DEF=Fusion protein, identical to Rpl40Bp, that is cleaved to yield ubiquitin and a ribosomal protein of the large (60S) ribosomal subunit with similarity to rat L40; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes /NOTE=Rpl40ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: ribosomal chaperone activity [goid GO:0000005] [evidence IDA] [pmid 2538753]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence NAS] [pmid 3038523] --- --- --- --- --- --- S0001410 // RPL40A SGDID:S0001410, Chr IX from 68708-68715,69150-69528, intron sequence removed, Verified ORF // sgd // 11 // --- /// YIL148W // cdna:known chromosome:SGD1:IX:68708:69528:1 gene:YIL148W // ensembl // 11 // --- --- No cerevisiae_gene -1.27133463191603 -1.04919874963355 -1.52250927633833 -1.53445389138095 -1.38130370567171 Max fold change below threshold 4 1.53445389138095 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777999_at YJR061W.S1 Hypothetical protein 1.5344349983041 4446.92956542969 3513.20520019531 --- --- --- --- 3722.7919921875 5712.38232421875 3181.47680664063 3303.61840820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR061W /GEN=CBF1 /DB_XREF=GI:6322521 /SEG=NC_001142:+550425,553232 /DEF=Hypothetical ORF /NOTE=Yjr061wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ISS]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003822 // span:24-46 // numtm:1 S0003822 // YJR061W SGDID:S0003822, Chr X from 550425-553232, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024181 // cdna:Genscan chromosome:SGD1:X:550587:553232:1 // ensembl // 11 // --- /// GENEFINDER00000024473 // cdna:GeneFinder chromosome:SGD1:X:550758:553232:1 // ensembl // 11 // --- /// YJR061W // cdna:known chromosome:SGD1:X:550425:553232:1 gene:YJR061W // ensembl // 11 // --- --- No cerevisiae_gene -1.45539053734766 1.5344349983041 -1.1263838936522 -1.17014588458322 -1.12688317238563 Max fold change below threshold 4 1.5344349983041 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774696_at YDR533C.S1 Possible chaperone and cysteine protease with similarity to E. coli Hsp31 and S. cerevisiae Hsp32p, Hsp33p, and Sno4p; member of the DJ-1/ThiJ/PfpI superfamily, which includes human DJ-1 involved in Parkinson's disease; exists as a dimer 1.53420113711155 7209.1015625 7029.1025390625 HSP31 --- 5625 // soluble fraction // inferred from direct assay 8234 // cysteine-type peptidase activity // inferred from sequence similarity /// 51082 // unfolded protein binding // inferred from sequence similarity 8413.5830078125 8503.4482421875 5914.7548828125 5644.6220703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR533C /GEN=HSP31 /DB_XREF=GI:6320742 /SEG=NC_001136:-1501435,1502148 /DEF=Possible chaperone and cysteine protease with similarity to E. coli Hsp31 and S. cerevisiae Hsp32p, Hsp33p, and Sno4p; member of the DJ-1/ThiJ/PfpI superfamily, which includes human DJ-1 involved in Parkinson's disease; exists as a dimer /NOTE=Hsp31p; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 11746603]; go_function: chaperone activity [goid GO:0003754] [evidence ISS] [pmid 14745011]; go_function: cysteine-type peptidase activity [goid GO:0008234] [evidence ISS] [pmid 14745011]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002941 // HSP31 SGDID:S0002941, Chr IV from 1502150-1501437, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023715 // cdna:GeneFinder chromosome:SGD1:IV:1501437:1502150:-1 // ensembl // 11 // --- /// GENSCAN00000025515 // cdna:Genscan chromosome:SGD1:IV:1501437:1502150:-1 // ensembl // 11 // --- /// YDR533C // cdna:known chromosome:SGD1:IV:1501437:1502150:-1 gene:YDR533C // ensembl // 11 // --- --- No cerevisiae_gene -1.53420113711155 1.01068097079348 -1.15437681939271 -1.42247365689849 -1.49054850847556 Max fold change below threshold 4 1.53420113711155 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777921_at YGR251W.S1 Protein required for cell viability 1.53409430702155 219.452224731445 330.622085571289 --- 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 300.690185546875 196.005020141602 242.899429321289 360.553985595703 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR251W /GEN=MGA1 /DB_XREF=GI:6321690 /SEG=NC_001139:+995643,996233 /DEF=Protein required for cell viability /NOTE=Ygr251wp; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14690591]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IMP] [pmid 12837249] --- --- --- --- --- --- S0003483 // YGR251W SGDID:S0003483, Chr VII from 995644-996234, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019533 // cdna:Genscan chromosome:SGD1:VII:995644:996234:1 // ensembl // 11 // --- /// GENEFINDER00000021434 // cdna:GeneFinder chromosome:SGD1:VII:995644:996234:1 // ensembl // 11 // --- /// YGR251W // cdna:known chromosome:SGD1:VII:995644:996234:1 gene:YGR251W // ensembl // 11 // --- --- No cerevisiae_gene 1.46559276875223 -1.53409430702155 -1.46043499340634 -1.23792051050538 1.19908797468714 Max fold change below threshold 4 1.53409430702155 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776174_at YIL050W.S1 Pho85p cyclin of the Pho80p subfamily, forms a functional kinase complex with Pho85p which phosphorylates Mmr1p and is regulated by Pho81p; involved in glycogen metabolism, expression is cell-cycle regulated 1.53403696532158 863.139343261719 1327.36169433594 PCL7 5979 // regulation of glycogen biosynthesis // inferred from genetic interaction /// 5981 // regulation of glycogen catabolism // inferred from genetic interaction 307 // cyclin-dependent protein kinase holoenzyme complex // traceable author statement 16538 // cyclin-dependent protein kinase regulator activity // traceable author statement 1289.96020507813 840.892517089844 885.386169433594 1364.76318359375 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL050W /GEN=PCL7 /DB_XREF=GI:6322139 /SEG=NC_001141:+258912,259769 /DEF=PHO85 cyclin /NOTE=Pcl7p; go_component: cyclin-dependent protein kinase holoenzyme complex [goid GO:0000307] [evidence TAS] [pmid 11602261]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS] [pmid 11602261]; go_process: regulation of glycogen biosynthesis [goid GO:0005979] [evidence IGI] [pmid 11602261]; go_process: regulation of glycogen catabolism [goid GO:0005981] [evidence IGI] [pmid 11602261] --- --- --- --- --- --- S0001312 // PCL7 SGDID:S0001312, Chr IX from 258912-259769, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019037 // cdna:GeneFinder chromosome:SGD1:IX:258912:259769:1 // ensembl // 11 // --- /// YIL050W // cdna:known chromosome:SGD1:IX:258912:259769:1 gene:YIL050W // ensembl // 11 // --- --- No cerevisiae_gene -1.02381920309288 -1.53403696532158 -1.10638022984549 -1.45694641458354 1.05798859392805 Max fold change below threshold 4 1.53403696532158 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775912_at YIL111W.S1 Subunit Vb of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; predominantly expressed during anaerobic growth while its isoform Va (Cox5Ap) is expressed during aerobic growth 1.53403520197652 3798.2978515625 2508.24768066406 COX5B 6123 // mitochondrial electron transport, cytochrome c to oxygen // inferred from direct assay /// 9061 // anaerobic respiration // traceable author statement 5751 // respiratory chain complex IV (sensu Eukaryota) // inferred from direct assay 4129 // cytochrome-c oxidase activity // inferred from direct assay 2630.09301757813 4034.6552734375 3561.9404296875 2386.40234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL111W /GEN=COX5B /DB_XREF=GI:6322080 /SEG=NC_001141:+155219,155762 /DEF=Subunit Vb of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; predominantly expressed during anaerobic growth while its isoform Va (Cox5Ap) is expressed during aerobic growth /NOTE=Cox5bp; go_component: respiratory chain complex IV (sensu Eukarya) [goid GO:0005751] [evidence IDA] [pmid 2986105]; go_function: cytochrome-c oxidase activity [goid GO:0004129] [evidence IDA] [pmid 2986105]; go_process: anaerobic respiration [goid GO:0009061] [evidence TAS] [pmid 7814361] --- --- --- --- --- S0001373 // span:95-114 // numtm:1 S0001373 // COX5B SGDID:S0001373, Chr IX from 155219-155219,155308-155762, intron sequence removed, Verified ORF // sgd // 11 // --- /// YIL111W // cdna:known chromosome:SGD1:IX:155219:155762:1 gene:YIL111W // ensembl // 11 // --- --- No cerevisiae_gene -1.04973987591609 1.53403520197652 1.1127746844594 1.35430207444429 -1.10211634030043 Max fold change below threshold 4 1.53403520197652 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772156_s_at YGR118W.S1 Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit, required for translational accuracy; nearly identical to Rps23Ap and similar to E. coli S12 and rat S23 ribosomal proteins; deletion of both RPS23A and RPS23B is lethal /// Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit, required for translational accuracy; nearly identical to Rps23Bp and similar to E. coli S12 and rat S23 ribosomal proteins; deletion of both RPS23A and RPS23B is lethal 1.53392360885693 6324.8056640625 6466.97387695313 RPS23B /// RPS23A 6412 // protein biosynthesis // traceable author statement /// 6450 // regulation of translational fidelity // inferred from mutant phenotype 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 7649.03515625 7663.02978515625 4986.58154296875 5284.91259765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR118W /GEN=RPS23A /DB_XREF=GI:6321556 /SEG=NC_001139:+726976,727733 /DEF=Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit, required for translational accuracy; nearly identical to Rps23Bp and similar to E. coli S12 and rat S23 ribosomal proteins; deletion of both RPS23A and RPS23B is lethal /NOTE=Rps23ap; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: regulation of translational fidelity [goid GO:0006450] [evidence IMP] [pmid 8950190] --- --- --- --- --- --- S0003350 // RPS23A SGDID:S0003350, Chr VII from 726978-727042,727363-727735, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0006336 // RPS23B SGDID:S0006336, Chr XVI from 794961-795025,795391-795763, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021739 // cdna:GeneFinder chromosome:SGD1:VII:726978:727735:1 // ensembl // 10 // --- /// YGR118W // cdna:known chromosome:SGD1:VII:726978:727735:1 gene:YGR118W // ensembl // 11 // --- /// YPR132W // cdna:known chromosome:SGD1:XVI:794961:795763:1 gene:YPR132W // ensembl // 11 // --- --- No cerevisiae_gene -1.35061486368986 1.00182959401027 -1.47407573996791 -1.53392360885693 -1.44733427751335 Max fold change below threshold 4 1.53392360885693 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779018_at YJR103W.S1 Minor CTP synthase isozyme (see also URA7), catalyzes the ATP-dependent transfer of the amide nitrogen from glutamine to UTP, forming CTP, the final step in de novo biosynthesis of pyrimidines; involved in phospholipid biosynthesis 1.53390319640971 4125.92639160156 2734.67309570313 URA8 8654 // phospholipid biosynthesis // traceable author statement /// 19856 // pyrimidine base biosynthesis // traceable author statement 5829 // cytosol // traceable author statement 3883 // CTP synthase activity // inferred from genetic interaction /// 3883 // CTP synthase activity // inferred from sequence similarity /// 3883 // CTP synthase activity // inferred from mutant phenotype 2817.54565429688 3930.01049804688 4321.84228515625 2651.80053710938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR103W /GEN=URA8 /DB_XREF=GI:6322563 /SEG=NC_001142:+620668,622362 /DEF=Last step in pyrimidine biosynthesis pathway /NOTE=Ura8p; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 9668079]; go_function: CTP synthase activity [goid GO:0003883] [evidence IGI,IMP,ISS] [pmid 8121398]; go_process: phospholipid biosynthesis [goid GO:0008654] [evidence TAS] [pmid 9668079]; go_process: pyrimidine base biosynthesis [goid GO:0019856] [evidence TAS] [pmid 8121398] --- --- --- --- --- --- S0003864 // URA8 SGDID:S0003864, Chr X from 620668-622362, Verified ORF // sgd // 11 // --- /// GENSCAN00000024213 // cdna:Genscan chromosome:SGD1:X:620668:622362:1 // ensembl // 11 // --- /// GENEFINDER00000024433 // cdna:GeneFinder chromosome:SGD1:X:620740:622362:1 // ensembl // 11 // --- /// YJR103W // cdna:known chromosome:SGD1:X:620668:622362:1 gene:YJR103W // ensembl // 11 // --- --- No cerevisiae_gene -1.3445309355309 1.39483471795868 1.23065226645912 1.53390319640971 -1.06250285979962 Max fold change below threshold 4 1.53390319640971 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773873_at YNR022C.S1 Mitochondrial ribosomal protein of the large subunit, not essential for mitochondrial translation 1.53351495857392 156.777641296387 258.328102111816 MRPL50 6412 // protein biosynthesis // inferred from curator 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // inferred from physical interaction 239.881088256836 157.129623413086 156.425659179688 276.775115966797 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR022C /GEN=MRPL50 /DB_XREF=GI:6324349 /SEG=NC_001146:-669773,670192 /DEF=Mitochondrial ribosomal protein of the large subunit, not essential for mitochondrial translation /NOTE=Mrpl50p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IPI] [pmid 12392552]; go_process: protein biosynthesis [goid GO:0006412] [evidence IC] [pmid 12392552] --- --- --- --- --- --- S0005305 // MRPL50 SGDID:S0005305, Chr XIV from 670193-669774, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020686 // cdna:GeneFinder chromosome:SGD1:XIV:669774:670193:-1 // ensembl // 11 // --- /// YNR022C // cdna:known chromosome:SGD1:XIV:669774:670193:-1 gene:YNR022C // ensembl // 11 // --- --- No cerevisiae_gene -1.20228208683206 -1.52664458200985 1.44615363281635 -1.53351495857392 1.1538013187203 Max fold change below threshold 4 1.53351495857392 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771645_at YPR151C.S1 Mitochondrial protein required for degradation of unstable forms of cytochrome c 1.53350706990786 5677.8310546875 4162.01721191406 SUE1 30163 // protein catabolism // inferred from mutant phenotype 5740 // mitochondrial membrane // inferred from direct assay --- 4487.7568359375 6882.0068359375 4473.6552734375 3836.27758789063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR151C /GEN=NCE102 /DB_XREF=GI:6325409 /SEG=NC_001148:-831049,831669 /DEF=Ypr151cp /NOTE=Nce102p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11914276]; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 8655575]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein secretion [goid GO:0009306] [evidence IGI,IMP] [pmid 8655575] --- --- --- --- --- --- S0006355 // SUE1 SGDID:S0006355, Chr XVI from 831671-831051, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YPR151C // cdna:known chromosome:SGD1:XVI:831051:831671:-1 gene:YPR151C // ensembl // 11 // --- YPR150W // ensembl // 8 // Negative Strand Matching Probes No cerevisiae_gene 1.01579470882477 1.53350706990786 -1.11472127983792 -1.00315213435951 -1.16982067463087 Max fold change below threshold 4 1.53350706990786 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774967_at YDL150W.S1 RNA polymerase III subunit C53 1.53342302360989 150.738975524902 212.026435852051 RPC53 6383 // transcription from RNA polymerase III promoter // traceable author statement 5666 // DNA-directed RNA polymerase III complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 202.758041381836 142.356674194336 159.121276855469 221.294830322266 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL150W /GEN=RPC53 /DB_XREF=GI:6320050 /SEG=NC_001136:+183344,184612 /DEF=RNA polymerase III subunit C53 /NOTE=Rpc53p; go_component: DNA-directed RNA polymerase III complex [goid GO:0005666] [evidence TAS] [pmid 8246845]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 8246845]; go_process: transcription from Pol III promoter [goid GO:0006383] [evidence TAS] --- --- --- --- --- --- S0002309 // RPC53 SGDID:S0002309, Chr IV from 183344-184612, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023597 // cdna:GeneFinder chromosome:SGD1:IV:183344:184612:1 // ensembl // 11 // --- /// GENSCAN00000024987 // cdna:Genscan chromosome:SGD1:IV:183344:184612:1 // ensembl // 11 // --- /// YDL150W // cdna:known chromosome:SGD1:IV:183344:184612:1 gene:YDL150W // ensembl // 11 // --- --- No cerevisiae_gene 1.53342302360989 -1.42429599826872 -1.0978447859203 -1.27423588717179 1.09142319985978 Max fold change below threshold 4 1.53342302360989 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777612_at SPBC25D12.06.S1 --- 1.53294110977204 --- --- --- --- 3.98669624328613 3.91526055335999 6.11137056350708 4.05819272994995 0.432372987270355 0.366210997104645 0.466064006090164 0.24609400331974 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC25D12.06 /DEF=RNA helicase (predicted) --- --- --- --- --- --- SPBC25D12.06 // |||RNA helicase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.07050120635717 -1.01824544981172 1.52365660898575 1.53294110977204 1.01793376828852 Max fold change below threshold 4 1.53294110977204 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777286_s_at YAR071W.S1 One of three repressible acid phosphatases, a glycoprotein that is transported to the cell surface by the secretory pathway; nearly identical to Pho11p; upregulated by phosphate starvation /// One of three repressible acid phosphatases, a glycoprotein that is transported to the cell surface by the secretory pathway; induced by phosphate starvation and coordinately regulated by PHO4 and PHO2 1.53274249572117 29.6843633651733 34.717490196228 PHO12 /// PHO11 6796 // phosphate metabolism // traceable author statement 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5576 // extracellular region // inferred from direct assay 3993 // acid phosphatase activity // inferred from sequence similarity /// 3993 // acid phosphatase activity // inferred from direct assay 29.8662281036377 19.4854831695557 39.883243560791 39.5687522888184 0.00415039015933871 0.0239257998764515 0.00805663969367743 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR071W /GEN=PHO11 /DB_XREF=GI:6319351 /SEG=NC_001133:+225453,226856 /DEF=One of three repressible acid phosphatases, a glycoprotein that is transported to the cell surface by the secretory pathway; induced by phosphate starvation and coordinately regulated by PHO4 and PHO2 /NOTE=Pho11p; go_component: extracellular [goid GO:0005576] [evidence IDA] [pmid 8817921]; go_function: acid phosphatase activity [goid GO:0003993] [evidence IDA] [pmid 8817921]; go_process: phosphate metabolism [goid GO:0006796] [evidence TAS] [pmid 11102525] --- --- --- --- --- --- S0000094 // PHO11 SGDID:S0000094, Chr I from 225451-226854, Verified ORF // sgd // 11 // --- /// S0001258 // PHO12 SGDID:S0001258, Chr VIII from 552098-553501, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018200 // cdna:GeneFinder chromosome:SGD1:I:225451:226854:1 // ensembl // 11 // --- /// GENSCAN00000020400 // cdna:Genscan chromosome:SGD1:I:225451:226854:1 // ensembl // 11 // --- /// GENSCAN00000016739 // cdna:Genscan chromosome:SGD1:VIII:552098:553501:1 // ensembl // 11 // --- /// GENEFINDER00000020300 // cdna:GeneFinder chromosome:SGD1:VIII:552098:553501:1 // ensembl // 11 // --- /// YAR071W // cdna:known chromosome:SGD1:I:225451:226854:1 gene:YAR071W // ensembl // 11 // --- /// YHR215W // cdna:known chromosome:SGD1:VIII:552098:553501:1 gene:YHR215W // ensembl // 11 // --- --- No cerevisiae_gene 1.00323919812268 -1.53274249572117 1.37188179842201 1.33539606750453 1.32486607118623 Max fold change below threshold 4 1.53274249572117 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1773588_at YLR004C.S1 Hypothetical protein 1.53271336739143 153.65185546875 237.406356811523 --- 6810 // transport // inferred from sequence similarity 16021 // integral to membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity 215.731750488281 142.812683105469 164.491027832031 259.080963134766 0.000244141003349796 0.00122069998178631 0.00805663969367743 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR004C /GEN=NOC3 /DB_XREF=GI:6323032 /SEG=NC_001144:-157933,159504 /DEF=Hypothetical ORF /NOTE=Ylr004cp; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 10869563]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 10869563]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 10869563] --- --- --- --- --- S0003994 // span:80-102,117-139,144-161,171-193,206-228,238-260,312-334,344-363,370-392,402-421,433-452,467-486 // numtm:12 S0003994 // YLR004C SGDID:S0003994, Chr XII from 159504-157933, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017748 // cdna:Genscan chromosome:SGD1:XII:157933:159495:-1 // ensembl // 11 // --- /// GENEFINDER00000024578 // cdna:GeneFinder chromosome:SGD1:XII:157933:159495:-1 // ensembl // 11 // --- /// YLR004C // cdna:known chromosome:SGD1:XII:157933:159504:-1 gene:YLR004C // ensembl // 11 // --- --- No cerevisiae_gene -1.35238649671612 -1.51059237735181 1.53271336739143 -1.31151074518529 1.20094034627897 Max fold change below threshold 4 1.53271336739143 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1772120_at YMR083W.S1 Mitochondrial alcohol dehydrogenase isozyme III; involved in the shuttling of mitochondrial NADH to the cytosol under anaerobic conditions and ethanol production 1.53244081876877 4243.08959960938 2746.99377441406 ADH3 6113 // fermentation // inferred from sequence similarity 5625 // soluble fraction // inferred from direct assay /// 5759 // mitochondrial matrix // inferred from direct assay 4022 // alcohol dehydrogenase activity // inferred from direct assay 2830.05200195313 4149.2919921875 4336.88720703125 2663.935546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR083W /GEN=ADH3 /DB_XREF=GI:6323729 /SEG=NC_001145:+434787,435914 /DEF=shows a high affinity for alcohols with a double bond conjugated to the alcohol function. /NOTE=Adh3p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 3550419]; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 11746603]; go_function: alcohol dehydrogenase activity [goid GO:0004022] [evidence IDA] [pmid 3550419]; go_process: fermentation [goid GO:0006113] [evidence ISS] [pmid 3550419] --- --- --- --- --- --- S0004688 // ADH3 SGDID:S0004688, Chr XIII from 434787-435914, Verified ORF // sgd // 11 // --- /// GENSCAN00000018780 // cdna:Genscan chromosome:SGD1:XIII:434787:435914:1 // ensembl // 11 // --- /// GENEFINDER00000021777 // cdna:GeneFinder chromosome:SGD1:XIII:434787:435914:1 // ensembl // 11 // --- /// YMR083W // cdna:known chromosome:SGD1:XIII:434787:435914:1 gene:YMR083W // ensembl // 11 // --- --- No cerevisiae_gene 1.38855595026628 1.46615397502375 1.11810788798689 1.53244081876877 -1.06235753536642 Max fold change below threshold 4 1.53244081876877 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780004_at YGR061C.S1 Formylglycinamidine-ribonucleotide (FGAM)-synthetase, catalyzes a step in the 'de novo' purine nucleotide biosynthetic pathway 1.53241330370943 3169.76831054688 2319.07312011719 ADE6 6164 // purine nucleotide biosynthesis // inferred from mutant phenotype /// 6164 // purine nucleotide biosynthesis // traceable author statement /// 6189 // 'de novo' IMP biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 4642 // phosphoribosylformylglycinamidine synthase activity // traceable author statement 2325.04614257813 2776.60498046875 3562.931640625 2313.10009765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR061C /GEN=ADE6 /DB_XREF=GI:6321498 /SEG=NC_001139:-611891,615967 /DEF=Formylglycinamidine-ribonucleotide (FGAM)-synthetase, catalyzes a step in the 'de novo' purine nucleotide biosynthetic pathway /NOTE=Ade6p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: phosphoribosylformylglycinamidine synthase activity [goid GO:0004642] [evidence TAS] [pmid 1743513]; go_process: purine nucleotide biosynthesis [goid GO:0006164] [evidence TAS]; go_process: purine nucleotide biosynthesis [goid GO:0006164] [evidence IMP] [pmid 1743513] --- --- --- --- --- --- S0003293 // ADE6 SGDID:S0003293, Chr VII from 615969-611893, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019388 // cdna:Genscan chromosome:SGD1:VII:611893:615969:-1 // ensembl // 11 // --- /// GENEFINDER00000021637 // cdna:GeneFinder chromosome:SGD1:VII:611893:615969:-1 // ensembl // 11 // --- /// YGR061C // cdna:known chromosome:SGD1:VII:611893:615969:-1 gene:YGR061C // ensembl // 11 // --- --- No cerevisiae_gene 1.36561312364747 1.19421500056335 1.15362608835993 1.53241330370943 -1.00516451706261 Max fold change below threshold 4 1.53241330370943 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772116_at YLR429W.S1 Coronin, cortical actin cytoskeletal component that associates with the Arp2p/Arp3p complex to regulate its activity 1.53229477403009 458.763854980469 546.888061523438 CRN1 7015 // actin filament organization // inferred from mutant phenotype /// 7015 // actin filament organization // inferred from physical interaction /// 7017 // microtubule-based process // inferred from physical interaction 30479 // actin cortical patch // inferred from direct assay 8017 // microtubule binding // inferred from direct assay /// 30674 // protein binding, bridging // inferred from direct assay /// 51015 // actin filament binding // inferred from direct assay 516.109313964844 336.821166992188 580.70654296875 577.666809082031 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR429W /GEN=CRN1 /DB_XREF=GI:6323460 /SEG=NC_001144:+990773,992728 /DEF=Coronin, cortical actin cytoskeletal component that associates with the Arp2p/Arp3p complex to regulate its activity /NOTE=Crn1p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10652251]; go_function: actin filament binding [goid GO:0051015] [evidence IDA] [pmid 9885246]; go_function: microtubule binding [goid GO:0008017] [evidence IDA] [pmid 9885246]; go_function: protein binding, bridging [goid GO:0030674] [evidence IDA] [pmid 9885246]; go_process: actin filament organization [goid GO:0007015] [evidence IMP,IPI] [pmid 9885246]; go_process: microtubule-based process [goid GO:0007017] [evidence IPI] [pmid 9885246] --- --- --- --- --- --- S0004421 // CRN1 SGDID:S0004421, Chr XII from 990773-992728, Verified ORF // sgd // 11 // --- /// GENSCAN00000018145 // cdna:Genscan chromosome:SGD1:XII:990773:992728:1 // ensembl // 11 // --- /// GENEFINDER00000024552 // cdna:GeneFinder chromosome:SGD1:XII:990773:992728:1 // ensembl // 11 // --- /// YLR429W // cdna:known chromosome:SGD1:XII:990773:992728:1 gene:YLR429W // ensembl // 11 // --- --- No cerevisiae_gene -1.04963934817342 -1.53229477403009 1.01248093794477 1.12516191290496 1.11927220348785 Max fold change below threshold 4 1.53229477403009 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776266_at SPBC1778.03c.S1 --- 1.53193398845573 --- --- --- --- 8.82481670379639 11.0198383331299 7.14256381988525 8.16368007659912 0.028564453125 0.0952147990465164 0.018554700538516 0.149657994508743 P A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1778.03c /DEF=NADH pyrophosphatase (predicted) --- --- --- --- --- --- SPBC1778.03c // |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.53193398845573 1.24873282958831 -1.45113056094754 -1.23552507563568 -1.08098512202755 Max fold change below threshold 4 1.53193398845573 Max fold change below threshold PAAAPA No 4 0 PAPA 2 2 0 No No 1 < x = 2
1778545_at YDR022C.S1 Protein of unknown function that may be involved in microtubule organization; high-copy suppressor of CIK1 deletion 1.53170219570898 983.050750732422 697.693786621094 CIS1 226 // microtubule cytoskeleton organization and biogenesis // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay --- 702.8408203125 930.145812988281 1035.95568847656 692.546752929688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR022C /GEN=CIS1 /DB_XREF=GI:6320225 /SEG=NC_001136:-488068,488658 /DEF=Involved in microtubule assembly /NOTE=Cis1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: regulation of cyclin dependent protein kinase activity [goid GO:0000079] [evidence IGI] [pmid 9348527] --- --- --- --- --- --- S0002429 // CIS1 SGDID:S0002429, Chr IV from 488658-488068, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023845 // cdna:GeneFinder chromosome:SGD1:IV:488068:488658:-1 // ensembl // 11 // --- /// GENSCAN00000025114 // cdna:Genscan chromosome:SGD1:IV:488068:488658:-1 // ensembl // 11 // --- /// YDR022C // cdna:known chromosome:SGD1:IV:488068:488658:-1 gene:YDR022C // ensembl // 11 // --- --- No cerevisiae_gene -1.53170219570898 1.3234089229119 1.28069582636871 1.47395492483768 -1.01486407573101 Max fold change below threshold 4 1.53170219570898 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772483_at YDL225W.S1 One of five related septins (Cdc3p, Cdc10p, Cdc11p, Cdc12p, Shs1p) that form a cortical filamentous collar at the mother-bud neck which is necessary for normal morphogenesis and cytokinesis 1.53169974192112 752.685516357422 588.276794433594 SHS1 902 // cellular morphogenesis // inferred from mutant phenotype /// 902 // cellular morphogenesis // inferred from sequence similarity /// 902 // cellular morphogenesis // inferred from physical interaction /// 910 // cytokinesis // inferred from mutant phenotype /// 910 // cytokinesis // inferred from sequence similarity /// 910 // cytokinesis // inferred from physical interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from sequence similarity /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction 5940 // septin ring // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from physical interaction /// 5200 // structural constituent of cytoskeleton // inferred from sequence similarity 528.715087890625 809.832763671875 695.538269042969 647.838500976563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL225W /GEN=SHS1 /DB_XREF=GI:6319976 /SEG=NC_001136:+52446,54101 /DEF=Component of the septin ring of the mother-bud neck that is required for cytokinesis; septins recruit proteins to the neck and can act as a barrier to diffusion at the membrane, and they comprise the 10nm filaments seen with EM /NOTE=Shs1p; go_component: septin ring [goid GO:0005940] [evidence IDA] [pmid 10481176]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI,ISS] [pmid 10481176]; go_process: cellular morphogenesis [goid GO:0000902] [evidence IMP,IPI,ISS] [pmid 10481176]; go_process: cytokinesis [goid GO:0000910] [evidence IMP,IPI,ISS] [pmid 10481176]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IMP,IPI,ISS] [pmid 10481176] --- --- --- --- --- --- S0002384 // SHS1 SGDID:S0002384, Chr IV from 52446-54101, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023796 // cdna:GeneFinder chromosome:SGD1:IV:52446:54101:1 // ensembl // 11 // --- /// GENSCAN00000024934 // cdna:Genscan chromosome:SGD1:IV:52446:54101:1 // ensembl // 11 // --- /// YDL225W // cdna:known chromosome:SGD1:IV:52446:54101:1 gene:YDL225W // ensembl // 11 // --- --- No cerevisiae_gene 1.34769640707475 1.53169974192112 1.08921602942718 1.31552566774273 1.22530738353088 Max fold change below threshold 4 1.53169974192112 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777028_at YBL091C.S1 Methionine aminopeptidase, catalyzes the cotranslational removal of N-terminal methionine from nascent polypeptides; function is partially redundant with that of Map1p 1.5316744721272 1289.61727905273 1320.59191894531 MAP2 6508 // proteolysis and peptidolysis // inferred from direct assay 5737 // cytoplasm // traceable author statement 4239 // methionyl aminopeptidase activity // inferred from direct assay 1276.3583984375 1021.46966552734 1557.76489257813 1364.82543945313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL091C /GEN=MAP2 /DB_XREF=GI:6319380 /SEG=NC_001134:-47360,48625 /DEF=methionine aminopeptidase 2 /NOTE=Map2p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 11811952]; go_function: methionyl aminopeptidase activity [goid GO:0004239] [evidence IDA] [pmid 11811952]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence IDA] [pmid 11811952] --- --- --- --- --- --- S0000187 // MAP2 SGDID:S0000187, Chr II from 48625-47360, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021068 // cdna:Genscan chromosome:SGD1:II:47360:48409:-1 // ensembl // 11 // --- /// GENEFINDER00000022320 // cdna:GeneFinder chromosome:SGD1:II:47360:48625:-1 // ensembl // 11 // --- /// YBL091C // cdna:known chromosome:SGD1:II:47360:48625:-1 gene:YBL091C // ensembl // 11 // --- --- No cerevisiae_gene 1.5316744721272 -1.24953137769252 1.07221453705496 1.22047607825915 1.06931206871356 Max fold change below threshold 4 1.5316744721272 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778861_at YBR216C.S1 Protein required for oxidation of specific cysteine residues of the transcription factor Yap1p, resulting in the nuclear localization of Yap1p in response to stress 1.53159500063817 206.492073059082 323.113571166992 YBP1 6979 // response to oxidative stress // inferred from direct assay 5737 // cytoplasm // inferred from direct assay --- 294.247009277344 192.118026733398 220.866119384766 351.980133056641 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR216C /GEN=YBP1 /DB_XREF=GI:6319693 /SEG=NC_001134:-655533,657557 /DEF=Required for the oxidative stress response to peroxides, including H2O2-induced expression of TRX2, H2O2-induced oxidation of Yap1p, and subsequent nuclear accumulation of Yap1p /NOTE=Ybp1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to oxidative stress [goid GO:0006979] [evidence IDA] [pmid 12743123] --- --- --- --- --- --- S0000420 // YBP1 SGDID:S0000420, Chr II from 657595-655571, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021313 // cdna:Genscan chromosome:SGD1:II:655571:657595:-1 // ensembl // 11 // --- /// GENEFINDER00000022251 // cdna:GeneFinder chromosome:SGD1:II:655571:657595:-1 // ensembl // 11 // --- /// YBR216C // cdna:known chromosome:SGD1:II:655571:657595:-1 gene:YBR216C // ensembl // 11 // --- --- No cerevisiae_gene -1.25823020430236 -1.53159500063817 1.47503486351114 -1.33224149587535 1.19620632311977 Max fold change below threshold 4 1.53159500063817 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780036_at YEL012W.S1 Ubiquitin-conjugating enzyme that negatively regulates gluconeogenesis by mediating the glucose-induced ubiquitination of fructose-1,6-bisphosphatase (FBPase); cytoplasmic enzyme that catalyzes the ubiquitination of histones in vitro 1.53155073782029 3735.95178222656 2594.75122070313 UBC8 209 // protein polyubiquitination // traceable author statement /// 6513 // protein monoubiquitination // traceable author statement /// 45721 // negative regulation of gluconeogenesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from curator 4840 // ubiquitin conjugating enzyme activity // traceable author statement 2561.65234375 3923.30053710938 3548.60302734375 2627.85009765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL012W /GEN=UBC8 /DB_XREF=GI:6579192 /SEG=NC_001137:+131772,132551 /DEF=Ubiquitin-conjugating enzyme that negatively regulates gluconeogenesis by mediating the glucose-induced ubiquitination of fructose-1,6-bisphosphatase (FBPase); cytoplasmic enzyme that catalyzes the ubiquitination of histones in vitro /NOTE=Ubc8p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 8982460]; go_function: ubiquitin conjugating enzyme activity [goid GO:0004840] [evidence TAS] [pmid 8982460]; go_process: negative regulation of gluconeogenesis [goid GO:0045721] [evidence IMP] [pmid 12686616]; go_process: protein monoubiquitination [goid GO:0006513] [evidence TAS] [pmid 8982460]; go_process: protein polyubiquitination [goid GO:0000209] [evidence TAS] [pmid 8982460] --- --- --- --- --- --- S0000738 // UBC8 SGDID:S0000738, Chr V from 131772-131776,131900-132551, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000016794 // cdna:Genscan chromosome:SGD1:V:131931:132551:1 // ensembl // 11 // --- /// GENEFINDER00000019667 // cdna:GeneFinder chromosome:SGD1:V:131979:132551:1 // ensembl // 11 // --- /// YEL012W // cdna:known chromosome:SGD1:V:131772:132551:1 gene:YEL012W // ensembl // 11 // --- --- No cerevisiae_gene -1.34091845352546 1.53155073782029 -1.0094457121208 1.38527893373265 1.02584181810141 Max fold change below threshold 4 1.53155073782029 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772414_at YLR298C.S1 Component of the U1 snRNP complex required for pre-mRNA splicing; putative ortholog of human U1C protein, which is involved in formation of a complex between U1 snRNP and the pre-mRNA 5' splice site 1.53154679450508 727.411773681641 500.26628112793 YHC1 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 243 // commitment complex // inferred from physical interaction /// 5685 // snRNP U1 // inferred from direct assay 3729 // mRNA binding // inferred from physical interaction 477.382598876953 731.1337890625 723.689758300781 523.149963378906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR298C /GEN=YHC1 /DB_XREF=GI:6323329 /SEG=NC_001144:-724723,725418 /DEF=U1 snRNP protein required for pre-mRNA splicing /NOTE=Yhc1p; go_component: commitment complex [goid GO:0000243] [evidence IPI] [pmid 10072386]; go_component: snRNP U1 [goid GO:0005685] [evidence IDA] [pmid 11804584]; go_function: mRNA binding [goid GO:0003729] [evidence IPI] [pmid 10072386]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10072386] --- --- --- --- --- --- S0004289 // YHC1 SGDID:S0004289, Chr XII from 725418-724723, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018050 // cdna:Genscan chromosome:SGD1:XII:724723:725418:-1 // ensembl // 11 // --- /// YLR298C // cdna:known chromosome:SGD1:XII:724723:725418:-1 gene:YLR298C // ensembl // 11 // --- --- No cerevisiae_gene 1.26110580837676 1.53154679450508 1.07149102342006 1.51595336738974 1.09587145532665 Max fold change below threshold 4 1.53154679450508 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772289_at YHR207C.S1 Zinc-finger protein of unknown function, contains one canonical and two unusual fingers in unusual arrangements; deletion enhances replication of positive-strand RNA virus 1.5313329421927 410.031723022461 523.475433349609 SET5 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 484.043884277344 316.093170166016 503.970275878906 562.906982421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR207C /GEN=SET5 /DB_XREF=GI:6322001 /SEG=NC_001140:-514903,516483 /DEF=Set5p /NOTE=go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001250 // SET5 SGDID:S0001250, Chr VIII from 516484-514904, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000016729 // cdna:Genscan chromosome:SGD1:VIII:514904:516484:-1 // ensembl // 10 // --- /// GENEFINDER00000020147 // cdna:GeneFinder chromosome:SGD1:VIII:514904:516484:-1 // ensembl // 10 // --- /// YHR207C // cdna:known chromosome:SGD1:VIII:514904:516484:-1 gene:YHR207C // ensembl // 10 // --- --- No cerevisiae_gene 1.11010122216863 -1.5313329421927 1.41698893207617 1.04116649801559 1.16292551296722 Max fold change below threshold 4 1.5313329421927 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779340_at YJL054W.S1 Translocase Inner Membrane, 54kD; Translocase for the insertion of proteins into the mitochondrial inner membrane. 1.53124570637737 484.303939819336 662.231414794922 TIM54 45039 // mitochondrial inner membrane protein import // inferred from genetic interaction /// 45039 // mitochondrial inner membrane protein import // inferred from physical interaction 42721 // mitochondrial inner membrane protein insertion complex // inferred from direct assay 8565 // protein transporter activity // inferred from physical interaction /// 8565 // protein transporter activity // inferred from genetic interaction 626.144958496094 408.912139892578 559.695739746094 698.31787109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL054W /GEN=TIM54 /DB_XREF=GI:6322407 /SEG=NC_001142:+334181,335617 /DEF=Translocase Inner Membrane, 54kD /NOTE=Tim54p; go_component: mitochondrial inner membrane protein insertion complex [goid GO:0042721] [evidence IDA] [pmid 10637294]; go_function: protein transporter activity [goid GO:0008565] [evidence IGI,IPI] [pmid 9412462]; go_process: mitochondrial inner membrane protein import [goid GO:0045039] [evidence IGI,IPI] [pmid 9412462] --- --- --- --- --- --- S0003590 // TIM54 SGDID:S0003590, Chr X from 334181-335617, Verified ORF // sgd // 11 // --- /// GENSCAN00000024099 // cdna:Genscan chromosome:SGD1:X:334181:335617:1 // ensembl // 11 // --- /// GENEFINDER00000024361 // cdna:GeneFinder chromosome:SGD1:X:334181:335617:1 // ensembl // 11 // --- /// YJL054W // cdna:known chromosome:SGD1:X:334181:335617:1 gene:YJL054W // ensembl // 11 // --- --- No cerevisiae_gene 1.06233268565915 -1.53124570637737 1.12794627498316 -1.11872382444816 1.11526550141201 Max fold change below threshold 4 1.53124570637737 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772939_at YOR168W.S1 Glutamine tRNA synthetase, monomeric class I tRNA synthetase that catalyzes the specific glutaminylation of tRNA(Glu); N-terminal domain proposed to be involved in enzyme-tRNA interactions 1.53077756262738 2226.69958496094 2381.52746582031 GLN4 6425 // glutaminyl-tRNA aminoacylation // inferred from mutant phenotype /// 6425 // glutaminyl-tRNA aminoacylation // inferred from sequence similarity 5737 // cytoplasm // inferred from curator 4819 // glutamine-tRNA ligase activity // inferred from direct assay 2320.04711914063 2263.20092773438 2190.1982421875 2443.0078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR168W /GEN=GLN4 /DB_XREF=GI:6324742 /SEG=NC_001147:+649303,651732 /DEF=glutaminyl-tRNA synthetase /NOTE=Gln4p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 2991203]; go_function: glutamine-tRNA ligase activity [goid GO:0004819] [evidence IDA] [pmid 2991203]; go_process: glutaminyl-tRNA aminoacylation [goid GO:0006425] [evidence IMP,ISS] [pmid 2991203] --- --- --- --- --- --- S0005694 // GLN4 SGDID:S0005694, Chr XV from 649303-651732, Verified ORF // sgd // 11 // --- /// GENSCAN00000017590 // cdna:Genscan chromosome:SGD1:XV:649303:651732:1 // ensembl // 11 // --- /// GENEFINDER00000022672 // cdna:GeneFinder chromosome:SGD1:XV:649303:651732:1 // ensembl // 11 // --- /// YOR168W // cdna:known chromosome:SGD1:XV:649303:651732:1 gene:YOR168W // ensembl // 11 // --- YOR169C // ensembl // 8 // Negative Strand Matching Probes No cerevisiae_gene 1.53077756262738 -1.0251176069741 -1.07905970265007 -1.0592863579433 1.05299922244895 Max fold change below threshold 4 1.53077756262738 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770302_at YHR087W.S1 Protein involved in RNA metabolism, one of two yeast homologs (with Sdo1p/Ylr022cp) of the human protein SBDS responsible for autosomal recessive Shwachman-Bodian-Diamond Syndrome, also conserved in Archaea 1.53076062814855 7901.45532226563 6909.87426757813 --- 16070 // RNA metabolism // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 8359.0390625 10186.5439453125 5616.36669921875 5460.70947265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR087W /GEN=NAM8 /DB_XREF=GI:6321879 /SEG=NC_001140:+280821,281156 /DEF=Hypothetical ORF /NOTE=Yhr087wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001129 // YHR087W SGDID:S0001129, Chr VIII from 280821-281156, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016630 // cdna:Genscan chromosome:SGD1:VIII:280821:281156:1 // ensembl // 11 // --- /// GENEFINDER00000020228 // cdna:GeneFinder chromosome:SGD1:VIII:280821:281156:1 // ensembl // 11 // --- /// YHR087W // cdna:known chromosome:SGD1:VIII:280821:281156:1 gene:YHR087W // ensembl // 11 // --- --- No cerevisiae_gene -1.48370077926022 1.21862619245446 -1.39101318988638 -1.48833569995755 -1.53076062814855 Max fold change below threshold 4 1.53076062814855 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779712_at YDR196C.S1 predicted to catalyze the final step in synthesis of Coenzyme A 1.53017125228014 1073.24633789063 1192.11505126953 --- 15937 // coenzyme A biosynthesis // inferred from sequence similarity 5635 // nuclear membrane // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay 4140 // dephospho-CoA kinase activity // inferred from sequence similarity 1130.6875 1008.29724121094 1138.19543457031 1253.54260253906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR196C /GEN=REF2 /DB_XREF=GI:6320402 /SEG=NC_001136:-850267,850992 /DEF=predicted to catalyze the final step in synthesis of Coenzyme A /NOTE=Ydr196cp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14690591]; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 14690591]; go_function: dephospho-CoA kinase activity [goid GO:0004140] [evidence ISS] [pmid 14690591]; go_process: coenzyme A biosynthesis [goid GO:0015937] [evidence ISS] [pmid 10592175] --- --- --- --- --- --- S0002604 // YDR196C SGDID:S0002604, Chr IV from 850994-850269, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDR196C // cdna:known chromosome:SGD1:IV:850269:850994:-1 gene:YDR196C // ensembl // 11 // --- --- No cerevisiae_gene -1.4015221627818 -1.12138311381481 1.53017125228014 1.00664014997098 1.10865522307363 Max fold change below threshold 4 1.53017125228014 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776914_at YLR456W.S1 Hypothetical protein 1.53000928454668 108.065582275391 164.307319641113 --- --- --- --- 152.567916870117 99.7169876098633 116.414176940918 176.046722412109 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244140625 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR456W /GEN=RIF2 /DB_XREF=GI:6323489 /SEG=NC_001144:+1055067,1055681 /DEF=Hypothetical ORF /NOTE=Ylr456wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004448 // YLR456W SGDID:S0004448, Chr XII from 1055067-1055681, Uncharacterized ORF // sgd // 11 // --- /// YLR456W // cdna:known chromosome:SGD1:XII:1055067:1055681:1 gene:YLR456W // ensembl // 11 // --- --- No cerevisiae_gene 1.20505824212389 -1.53000928454668 1.15411247332276 -1.31056131546201 1.15389084431152 Max fold change below threshold 4 1.53000928454668 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772632_at YDR429C.S1 Subunit of the core complex of translation initiation factor 3(eIF3), which is essential for translation 1.5295405434783 1813.87036132813 1556.39538574219 TIF35 6413 // translational initiation // inferred from direct assay 5852 // eukaryotic translation initiation factor 3 complex // inferred from physical interaction /// 5852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay 3743 // translation initiation factor activity // inferred from direct assay 1531.81787109375 1693.98803710938 1933.75268554688 1580.97290039063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR429C /GEN=TIF35 /DB_XREF=GI:6320637 /SEG=NC_001136:-1324465,1325289 /DEF=Subunit of the core complex of translation initiation factor 3(eIF3), which is essential for translation /NOTE=Tif35p; go_component: eukaryotic translation initiation factor 3 complex [goid GO:0005852] [evidence IDA,IPI] [pmid 9671501]; go_function: translation initiation factor activity [goid GO:0003743] [evidence IDA] [pmid 9671501]; go_process: translational initiation [goid GO:0006413] [evidence IDA] [pmid 9671501] --- --- --- --- --- --- S0002837 // TIF35 SGDID:S0002837, Chr IV from 1325291-1324467, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023596 // cdna:GeneFinder chromosome:SGD1:IV:1324467:1325291:-1 // ensembl // 11 // --- /// GENSCAN00000025438 // cdna:Genscan chromosome:SGD1:IV:1324467:1325291:-1 // ensembl // 11 // --- /// YDR429C // cdna:known chromosome:SGD1:IV:1324467:1325291:-1 gene:YDR429C // ensembl // 11 // --- --- No cerevisiae_gene 1.5295405434783 1.10586778563945 1.12753098898591 1.26239073328354 1.0320893431422 Max fold change below threshold 4 1.5295405434783 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772405_at YLL029W.S1 Hypothetical protein 1.52932179603684 3256.89147949219 2241.44848632813 --- --- 5737 // cytoplasm // inferred from direct assay --- 2166.74438476563 3200.13354492188 3313.6494140625 2316.15258789063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL029W /GEN=GPI13 /DB_XREF=GI:6322999 /SEG=NC_001144:+81460,83709 /DEF=Hypothetical ORF /NOTE=Yll029wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003952 // YLL029W SGDID:S0003952, Chr XII from 81460-83709, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017694 // cdna:Genscan chromosome:SGD1:XII:81670:83709:1 // ensembl // 11 // --- /// GENEFINDER00000024612 // cdna:GeneFinder chromosome:SGD1:XII:81670:83709:1 // ensembl // 11 // --- /// YLL029W // cdna:known chromosome:SGD1:XII:81460:83709:1 gene:YLL029W // ensembl // 11 // --- --- No cerevisiae_gene -1.02014487805943 1.47693173565927 1.16310720525161 1.52932179603684 1.06895515879745 Max fold change below threshold 4 1.52932179603684 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773687_at YPL207W.S1 Hypothetical protein /// Identified by expression profiling and mass spectrometry 1.52925203955728 704.357177734375 1054.09530639648 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 1013.67083740234 662.85400390625 745.8603515625 1094.51977539063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL207W /GEN=IPL1 /DB_XREF=GI:6325049 /SEG=NC_001148:+159908,162340 /DEF=Hypothetical ORF /NOTE=Ypl207wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0006128 // span:7-29 // numtm:1 S0006128 // YPL207W SGDID:S0006128, Chr XVI from 159908-162340, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017029 // cdna:Genscan chromosome:SGD1:XVI:159908:162340:1 // ensembl // 11 // --- /// GENEFINDER00000020881 // cdna:GeneFinder chromosome:SGD1:XVI:159908:162340:1 // ensembl // 11 // --- /// YPL207W // cdna:known chromosome:SGD1:XVI:159908:162340:1 gene:YPL207W // ensembl // 11 // --- --- No cerevisiae_gene 1.37099417792034 -1.52925203955728 1.0560319094739 -1.35906250450075 1.07975857152551 Max fold change below threshold 4 1.52925203955728 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779807_at YOR118W.S1 Hypothetical protein 1.52900443420505 499.78190612793 425.984283447266 --- --- 5737 // cytoplasm // inferred from direct assay --- 384.273834228516 412.007415771484 587.556396484375 467.694732666016 0.000732421991415322 0.000244141003349796 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR118W /GEN=RPT5 /DB_XREF=GI:6324692 /SEG=NC_001147:+546857,548560 /DEF=Hypothetical ORF /NOTE=Yor118wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005644 // YOR118W SGDID:S0005644, Chr XV from 546857-548560, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017549 // cdna:Genscan chromosome:SGD1:XV:546857:548560:1 // ensembl // 11 // --- /// GENEFINDER00000022716 // cdna:GeneFinder chromosome:SGD1:XV:547727:548560:1 // ensembl // 11 // --- /// YOR118W // cdna:known chromosome:SGD1:XV:546857:548560:1 gene:YOR118W // ensembl // 11 // --- --- No cerevisiae_gene 1.05937832183188 1.07217140245484 1.51202619782503 1.52900443420505 1.21708711602751 Max fold change below threshold 4 1.52900443420505 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770443_at YJL085W.S1 Essential 70kDa subunit of the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, and Exo84p), which has the essential function of mediating polarized targeting of secretory vesicles to active sites of exocytosis 1.52873242076033 92.6103706359863 151.569068908691 EXO70 910 // cytokinesis // inferred from mutant phenotype /// 6893 // Golgi to plasma membrane transport // traceable author statement /// 6904 // vesicle docking during exocytosis // traceable author statement /// 6906 // vesicle fusion // traceable author statement /// 7121 // bipolar bud site selection // inferred from mutant phenotype 145 // exocyst // inferred from physical interaction 5515 // protein binding // inferred from physical interaction 136.923675537109 89.5668029785156 95.653938293457 166.214462280273 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL085W /GEN=EXO70 /DB_XREF=GI:6322375 /SEG=NC_001142:+272743,274614 /DEF=Component of the exocyst complex, which is required for exocytosis; interacts with Rho3p /NOTE=Exo70p; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IDA] [pmid 10652251]; go_component: exocyst [goid GO:0000145] [evidence TAS] [pmid 9700152]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 10207081]; go_process: Golgi to plasma membrane transport [goid GO:0006893] [evidence TAS] [pmid 9700152]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence TAS] [pmid 9700152]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251]; go_process: vesicle docking during exocytosis [goid GO:0006904] [evidence TAS] [pmid 9700152]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 9700152] --- --- --- --- --- --- S0003621 // EXO70 SGDID:S0003621, Chr X from 272743-274614, Verified ORF // sgd // 11 // --- /// GENSCAN00000024072 // cdna:Genscan chromosome:SGD1:X:272743:274614:1 // ensembl // 11 // --- /// GENEFINDER00000024315 // cdna:GeneFinder chromosome:SGD1:X:272743:274614:1 // ensembl // 11 // --- /// YJL085W // cdna:known chromosome:SGD1:X:272743:274614:1 gene:YJL085W // ensembl // 11 // --- --- No cerevisiae_gene -1.47699622365981 -1.52873242076033 1.38385868057142 -1.43144838550234 1.21392054097486 Max fold change below threshold 4 1.52873242076033 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779185_at SPAC4D7.11.S1 --- 1.52845348065806 --- --- --- --- 6.84268951416016 8.41001796722412 10.2585954666138 4.91005182266235 0.171387001872063 0.194580003619194 0.194580003619194 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4D7.11 /DEF=sequence orphan --- --- --- --- --- --- SPAC4D7.11 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.52845348065806 1.22905152277048 1.3437567246637 1.49920516565669 -1.39360841011447 Max fold change below threshold 4 1.52845348065806 Max fold change below threshold APAPAA No 4 0 AAAA 4 0 0 No No x = 1
1769407_at YDR439W.S1 Protein involved in rDNA silencing; positively charged coiled-coil protein with limited similarity to myosin 1.52818379430561 221.15406036377 286.45198059082 LRS4 183 // chromatin silencing at ribosomal DNA // inferred from direct assay /// 45143 // homologous chromosome segregation // inferred from mutant phenotype /// 45143 // homologous chromosome segregation // inferred from physical interaction 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 276.291320800781 209.379852294922 232.928268432617 296.612640380859 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR439W /GEN=LRS4 /DB_XREF=GI:6320647 /SEG=NC_001136:+1339664,1340707 /DEF=Loss of rDNA silencing /NOTE=Lrs4p; go_component: nuclear chromosome [goid GO:0000228] [evidence IDA] [pmid 12689592]; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 12689592]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10082585]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin silencing at ribosomal DNA [goid GO:0000183] [evidence IDA] [pmid 10082585]; go_process: homologous chromosome segregation [goid GO:0045143] [evidence IMP,IPI] [pmid 12689592] --- --- --- --- --- --- S0002847 // LRS4 SGDID:S0002847, Chr IV from 1339666-1340709, Verified ORF // sgd // 11 // --- /// GENSCAN00000025445 // cdna:Genscan chromosome:SGD1:IV:1339666:1340709:1 // ensembl // 11 // --- /// YDR439W // cdna:known chromosome:SGD1:IV:1339666:1340709:1 gene:YDR439W // ensembl // 11 // --- --- No cerevisiae_gene -1.52818379430561 -1.31956975693923 1.05582594780325 -1.18616483374884 1.07355033636663 Max fold change below threshold 4 1.52818379430561 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770116_at YDR062W.S1 Component of serine palmitoyltransferase, responsible along with Lcb1p for the first committed step in sphingolipid synthesis, which is the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine 1.5280336830513 1298.16564941406 1912.59881591797 LCB2 30148 // sphingolipid biosynthesis // traceable author statement 5624 // membrane fraction // inferred from direct assay /// 5792 // microsome // inferred from physical interaction /// 17059 // serine C-palmitoyltransferase complex // inferred from mutant phenotype 4758 // serine C-palmitoyltransferase activity // inferred from direct assay 1929.52136230469 1333.58337402344 1262.74792480469 1895.67626953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR062W /GEN=LCB2 /DB_XREF=GI:6320267 /SEG=NC_001136:+576469,578154 /DEF=Serine palmitoyltransferase catalyses the committed step in sphingolipid synthesis, the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine. /NOTE=Lcb2p; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 10713067]; go_component: microsome [goid GO:0005792] [evidence IPI] [pmid 10713067]; go_component: serine C-palmitoyltransferase complex [goid GO:0017059] [evidence IMP] [pmid 1556076]; go_function: serine C-palmitoyltransferase activity [goid GO:0004758] [evidence IDA] [pmid 1556076]; go_process: sphingolipid biosynthesis [goid GO:0030148] [evidence TAS] [pmid 12185836] --- --- --- --- --- --- S0002469 // LCB2 SGDID:S0002469, Chr IV from 576470-578155, Verified ORF // sgd // 11 // --- /// GENSCAN00000025145 // cdna:Genscan chromosome:SGD1:IV:576470:578155:1 // ensembl // 11 // --- /// GENEFINDER00000023503 // cdna:GeneFinder chromosome:SGD1:IV:576716:578155:1 // ensembl // 11 // --- /// YDR062W // cdna:known chromosome:SGD1:IV:576470:578155:1 gene:YDR062W // ensembl // 11 // --- --- No cerevisiae_gene 1.04176011105207 -1.44686968950677 -1.27990109386391 -1.5280336830513 -1.01785383576163 Max fold change below threshold 4 1.5280336830513 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771620_at YPR162C.S1 Subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing 1.52740732354803 352.472763061523 308.261917114258 ORC4 6267 // pre-replicative complex formation and maintenance // traceable author statement /// 6270 // DNA replication initiation // traceable author statement /// 30466 // chromatin silencing at silent mating-type cassette // traceable author statement 5656 // pre-replicative complex // traceable author statement /// 5664 // nuclear origin of replication recognition complex // traceable author statement 3688 // DNA replication origin binding // traceable author statement 281.426605224609 289.609191894531 415.336334228516 335.097229003906 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR162C /GEN=ORC4 /DB_XREF=GI:6325420 /SEG=NC_001148:-866709,868298 /DEF=Subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing /NOTE=Orc4p; go_component: nuclear origin of replication recognition complex [goid GO:0005664] [evidence TAS] [pmid 9442876]; go_function: DNA replication origin binding [goid GO:0003688] [evidence TAS] [pmid 9442876]; go_process: DNA replication initiation [goid GO:0006270] [evidence TAS] [pmid 9442876]; go_process: chromatin silencing at silent mating-type cassette (sensu Fungi) [goid GO:0030466] [evidence TAS] [pmid 9442876]; go_process: pre-replicative complex formation and maintenance [goid GO:0006267] [evidence TAS] [pmid 9442876] --- --- --- --- --- --- S0006366 // ORC4 SGDID:S0006366, Chr XVI from 868300-866711, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017309 // cdna:Genscan chromosome:SGD1:XVI:866711:868300:-1 // ensembl // 11 // --- /// YPR162C // cdna:known chromosome:SGD1:XVI:866711:868300:-1 gene:YPR162C // ensembl // 11 // --- --- No cerevisiae_gene 1.01483031434146 1.02907538419614 1.52740732354803 1.47582469644983 1.19070913262256 Max fold change below threshold 4 1.52740732354803 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778840_at YJL168C.S1 Histone methyltransferase with a role in transcriptional elongation, methylates a lysine residue of histone H3; associates with the C-terminal domain of Rpo21p; histone methylation activity is regulated by phosphorylation status of Rpo21p 1.52736516082088 685.065277099609 499.824951171875 SET2 6354 // RNA elongation // inferred from direct assay /// 6354 // RNA elongation // inferred from physical interaction /// 6355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 6355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 16571 // histone methylation // inferred from direct assay /// 16571 // histone methylation // inferred from mutant phenotype 5634 // nucleus // inferred from physical interaction 42054 // histone methyltransferase activity // inferred from sequence similarity /// 46975 // histone lysine N-methyltransferase activity (H3-K36 specific) // inferred from direct assay /// 46975 // histone lysine N-methyltransferase activity (H3-K36 specific) // inferred from physical interaction /// 46975 // histone lysine N-methyltransferase activity (H3-K36 specific) // inferred from mutant phenotype 484.502319335938 740.011962890625 630.118591308594 515.147583007813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL168C /GEN=SET2 /DB_XREF=GI:6322293 /SEG=NC_001142:-102220,104421 /DEF=Histone methyltransferase with a role in transcriptional elongation, methylates a lysine residue of histone H3; associates with the C-terminal domain of Rpo21p; histone methylation activity is regulated by phosphorylation status of Rpo21p /NOTE=Set2p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 11839797]; go_function: histone-lysine N-methyltransferase activity [goid GO:0018024] [evidence IDA,IMP,IPI,ISS] [pmid 11839797]; go_process: RNA elongation [goid GO:0006354] [evidence IDA,IPI] [pmid 12736296]; go_process: histone methylation [goid GO:0016571] [evidence IDA,IMP] [pmid 11839797]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence IDA,IMP] [pmid 11839797] --- --- --- --- --- --- S0003704 // SET2 SGDID:S0003704, Chr X from 104421-102220, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024010 // cdna:Genscan chromosome:SGD1:X:102220:104421:-1 // ensembl // 11 // --- /// GENEFINDER00000024353 // cdna:GeneFinder chromosome:SGD1:X:102220:104421:-1 // ensembl // 11 // --- /// YJL168C // cdna:known chromosome:SGD1:X:102220:104421:-1 gene:YJL168C // ensembl // 11 // --- YJL169W // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene 1.1908529335661 1.52736516082088 -1.33305288810722 1.3005481422096 1.0632510154211 Max fold change below threshold 4 1.52736516082088 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769600_at YKR038C.S1 Putative glycoprotease that interacts with Bud32p, which is a member of the novel protein kinase piD261 family 1.52720437432307 965.081573486328 1364.45196533203 KAE1 6508 // proteolysis and peptidolysis // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4222 // metalloendopeptidase activity // inferred from sequence similarity /// 8450 // O-sialoglycoprotein endopeptidase activity // inferred from sequence similarity 1301.17150878906 851.995666503906 1078.16748046875 1427.732421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR038C /GEN=KAE1 /DB_XREF=GI:37362674 /SEG=NC_001143:-511641,512801 /DEF=Putative glycoprotease that interacts with Bud32p, which is a member of the novel protein kinase piD261 family /NOTE=Kae1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: O-sialoglycoprotein endopeptidase activity [goid GO:0008450] [evidence ISS] [pmid 14519092]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001746 // KAE1 SGDID:S0001746, Chr XI from 512801-511641, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018449 // cdna:Genscan chromosome:SGD1:XI:511641:512801:-1 // ensembl // 11 // --- /// GENEFINDER00000023012 // cdna:GeneFinder chromosome:SGD1:XI:511641:512906:-1 // ensembl // 11 // --- /// YKR038C // cdna:known chromosome:SGD1:XI:511641:512801:-1 gene:YKR038C // ensembl // 11 // --- --- No cerevisiae_gene 1.38559893395347 -1.52720437432307 -1.0786581129853 -1.20683616632859 1.09726689543312 Max fold change below threshold 4 1.52720437432307 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772833_at YIR033W.S1 ER membrane protein involved, with its homolog Spt23p, in regulation of OLE1 transcription; inactive ER form dimerizes and one subunit is then activated by ubiquitin/proteasome-dependent processing followed by nuclear targeting 1.52694298769445 434.835327148438 593.741516113281 MGA2 6631 // fatty acid metabolism // inferred from mutant phenotype /// 9409 // response to cold // inferred from expression pattern /// 9409 // response to cold // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 5789 // endoplasmic reticulum membrane // inferred from direct assay 16563 // transcriptional activator activity // inferred from mutant phenotype 597.847900390625 478.138092041016 391.532562255859 589.635131835938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR033W /GEN=MGA2 /DB_XREF=GI:6322224 /SEG=NC_001141:+416121,419462 /DEF=hypoxia sensor /NOTE=Mga2p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 11557770]; go_function: transcriptional activator activity [goid GO:0016563] [evidence IMP] [pmid 11557770]; go_process: fatty acid metabolism [goid GO:0006631] [evidence IMP] [pmid 11557770]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IMP] [pmid 11557770]; go_process: response to cold [goid GO:0009409] [evidence IEP,IMP] [pmid 11855848] --- --- --- --- --- S0001472 // span:1038-1056 // numtm:1 S0001472 // MGA2 SGDID:S0001472, Chr IX from 416121-419462, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019062 // cdna:GeneFinder chromosome:SGD1:IX:416121:419462:1 // ensembl // 11 // --- /// GENSCAN00000016501 // cdna:Genscan chromosome:SGD1:IX:416199:419462:1 // ensembl // 11 // --- /// YIR033W // cdna:known chromosome:SGD1:IX:416121:419462:1 gene:YIR033W // ensembl // 11 // --- --- No cerevisiae_gene 1.07580003961148 -1.25036659982184 -1.02511082707732 -1.52694298769445 -1.01392856041178 Max fold change below threshold 4 1.52694298769445 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771328_at YHR200W.S1 Non-ATPase base subunit of the 19S regulatory particle (RP) of the 26S proteasome; N-terminus plays a role in maintaining the structural integrity of the RP; binds selectively to polyubiquitin chains; homolog of the mammalian S5a protein 1.52692568019207 2076.89703369141 2505.54516601563 RPN10 6511 // ubiquitin-dependent protein catabolism // traceable author statement 502 // proteasome complex (sensu Eukaryota) // inferred from mutant phenotype /// 8540 // proteasome regulatory particle, base subcomplex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement 2566.83569335938 1681.04821777344 2472.74584960938 2444.25463867188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR200W /GEN=RPN10 /DB_XREF=GI:6321994 /SEG=NC_001140:+499077,499883 /DEF=homolog of the mammalian S5a protein, component of 26S proteasome /NOTE=Rpn10p; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence TAS] [pmid 9697412]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 9697412]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 9697412] --- --- --- --- --- --- S0001243 // RPN10 SGDID:S0001243, Chr VIII from 499078-499884, Verified ORF // sgd // 11 // --- /// GENSCAN00000016722 // cdna:Genscan chromosome:SGD1:VIII:499078:499884:1 // ensembl // 11 // --- /// GENEFINDER00000020171 // cdna:GeneFinder chromosome:SGD1:VIII:499078:499884:1 // ensembl // 11 // --- /// YHR200W // cdna:known chromosome:SGD1:VIII:499078:499884:1 gene:YHR200W // ensembl // 11 // --- --- No cerevisiae_gene -1.42510864770978 -1.52692568019207 -1.08709265531828 -1.03805075388757 -1.05015068919092 Max fold change below threshold 4 1.52692568019207 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776571_at YDR322W.S1 Mitochondrial ribosomal protein of the large subunit 1.52592258033805 343.600738525391 423.148284912109 MRPL35 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement /// 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // traceable author statement 408.911254882813 267.976409912109 419.225067138672 437.385314941406 0.00195312988944352 0.00585938012227416 0.00415039015933871 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR322W /GEN=MRPL35 /DB_XREF=GI:6320528 /SEG=NC_001136:+1110582,1111685 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl35p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0002730 // MRPL35 SGDID:S0002730, Chr IV from 1110584-1111687, Verified ORF // sgd // 11 // --- /// GENSCAN00000025351 // cdna:Genscan chromosome:SGD1:IV:1110584:1111687:1 // ensembl // 11 // --- /// YDR322W // cdna:known chromosome:SGD1:IV:1110584:1111687:1 gene:YDR322W // ensembl // 11 // --- GENEFINDER00000023476 // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene -1.28589061948486 -1.52592258033805 1.18638122085461 1.02522261770177 1.06963383795037 Max fold change below threshold 4 1.52592258033805 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1779498_at YLR178C.S1 Carboxypeptidase Y inhibitor, function requires acetylation by the NatB N-terminal acetyltransferase; phosphatidylethanolamine-binding protein involved in protein kinase A signaling pathway 1.52541429202473 4879.23413085938 4849.56811523438 TFS1 30162 // regulation of proteolysis and peptidolysis // inferred from direct assay /// 30162 // regulation of proteolysis and peptidolysis // inferred from physical interaction 5625 // soluble fraction // inferred from direct assay 8289 // lipid binding // inferred from sequence similarity /// 30414 // protease inhibitor activity // inferred from direct assay 5496.89892578125 5613.47607421875 4144.9921875 4202.2373046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR178C /GEN=TFS1 /DB_XREF=GI:6323207 /SEG=NC_001144:-513164,513823 /DEF=Carboxypeptidase Y inhibitor /NOTE=Tfs1p; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 9521655]; go_function: lipid binding [goid GO:0008289] [evidence ISS] [pmid 9521655]; go_function: protease inhibitor activity [goid GO:0030414] [evidence IDA] [pmid 9521655]; go_process: regulation of proteolysis and peptidolysis [goid GO:0030162] [evidence IDA,IPI] [pmid 9521655] --- --- --- --- --- --- S0004168 // TFS1 SGDID:S0004168, Chr XII from 513823-513164, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017958 // cdna:Genscan chromosome:SGD1:XII:513164:513823:-1 // ensembl // 11 // --- /// GENEFINDER00000024777 // cdna:GeneFinder chromosome:SGD1:XII:513164:514715:-1 // ensembl // 11 // --- /// YLR178C // cdna:known chromosome:SGD1:XII:513164:513823:-1 gene:YLR178C // ensembl // 11 // --- --- No cerevisiae_gene -1.52541429202473 1.02120780280146 -1.23493053655664 -1.32615423072646 -1.30808865069319 Max fold change below threshold 4 1.52541429202473 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773318_at YBR057C.S1 Cytoplasmic protein essential for meiotic DNA replication and sporulation; interacts with Orc2p, which is a component of the origin recognition complex 1.52527428321576 348.797302246094 532.787521362305 MUM2 6279 // premeiotic DNA synthesis // inferred from mutant phenotype /// 6279 // premeiotic DNA synthesis // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay --- 499.179290771484 327.271820068359 370.322784423828 566.395751953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR057C /GEN=MUM2 /DB_XREF=GI:6319531 /SEG=NC_001134:-352153,353253 /DEF=Muddled Meiosis /NOTE=Mum2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: premeiotic DNA synthesis [goid GO:0006279] [evidence IGI] [pmid 11238403]; go_process: premeiotic DNA synthesis [goid GO:0006279] [evidence IMP] [pmid 9504908] --- --- --- --- --- --- S0000261 // MUM2 SGDID:S0000261, Chr II from 353291-352191, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021185 // cdna:Genscan chromosome:SGD1:II:352191:353291:-1 // ensembl // 11 // --- /// GENEFINDER00000022131 // cdna:GeneFinder chromosome:SGD1:II:352191:353039:-1 // ensembl // 11 // --- /// YBR057C // cdna:known chromosome:SGD1:II:352191:353291:-1 gene:YBR057C // ensembl // 11 // --- --- No cerevisiae_gene -1.18551564048519 -1.52527428321576 1.1934777953094 -1.34795727340444 1.13465394583529 Max fold change below threshold 4 1.52527428321576 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779440_at YDL124W.S1 NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters 1.52520963647119 7127.00415039063 5232.41284179688 --- 8152 // metabolism // inferred from curator 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 51268 // alpha-keto amide reductase activity // inferred from direct assay /// 51269 // alpha-keto ester reductase activity // inferred from direct assay 5935.76513671875 8863.912109375 5390.09619140625 4529.060546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL124W /GEN=HNT1 /DB_XREF=GI:6320079 /SEG=NC_001136:+240259,241197 /DEF=Hypothetical ORF /NOTE=Ydl124wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002282 // YDL124W SGDID:S0002282, Chr IV from 240259-241197, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023458 // cdna:GeneFinder chromosome:SGD1:IV:240259:241197:1 // ensembl // 11 // --- /// GENSCAN00000025006 // cdna:Genscan chromosome:SGD1:IV:240259:241197:1 // ensembl // 11 // --- /// YDL124W // cdna:known chromosome:SGD1:IV:240259:241197:1 gene:YDL124W // ensembl // 11 // --- --- No cerevisiae_gene -1.52520963647119 1.49330573316365 -1.19240625227136 -1.10123547445823 -1.31059522726283 Max fold change below threshold 4 1.52520963647119 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778570_at YLR110C.S1 Cell wall protein, mutants are defective in mating and agglutination, expression is downregulated by alpha-factor 1.52506475730308 8414.23828125 7386.45092773438 CCW12 747 // conjugation with cellular fusion // inferred from mutant phenotype /// 752 // agglutination during conjugation with cellular fusion // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 8880.8720703125 11005.201171875 5823.275390625 5892.02978515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR110C /GEN=CCW12 /DB_XREF=GI:6323139 /SEG=NC_001144:-369698,370099 /DEF=Ccw12p /NOTE=go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: agglutination during conjugation with cellular fusion [goid GO:0000752] [evidence IMP] [pmid 10322008]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 10322008]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IMP] [pmid 10322008] --- --- --- --- --- --- S0004100 // CCW12 SGDID:S0004100, Chr XII from 370099-369698, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017906 // cdna:Genscan chromosome:SGD1:XII:369698:370099:-1 // ensembl // 11 // --- /// GENEFINDER00000024697 // cdna:GeneFinder chromosome:SGD1:XII:369698:370099:-1 // ensembl // 11 // --- /// YLR110C // cdna:known chromosome:SGD1:XII:369698:370099:-1 gene:YLR110C // ensembl // 11 // --- --- No cerevisiae_gene -1.40109034993853 1.23920275900199 -1.37582556602191 -1.52506475730308 -1.5072686992666 Max fold change below threshold 4 1.52506475730308 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775701_at YDR264C.S1 Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control; contains ankyrin repeats 1.52450035082652 387.669143676758 478.037796020508 AKR1 750 // signal transduction during conjugation with cellular fusion // inferred from genetic interaction /// 6897 // endocytosis // inferred from mutant phenotype /// 18318 // protein amino acid palmitoylation // inferred from direct assay 16020 // membrane // inferred from direct assay 19706 // protein-cysteine S-palmitoleyltransferase activity // inferred from direct assay 444.985382080078 355.0791015625 420.259185791016 511.090209960938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR264C /GEN=AKR1 /DB_XREF=GI:6320470 /SEG=NC_001136:-996021,998315 /DEF=Negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control /NOTE=Akr1p; go_component: membrane [goid GO:0016020] [evidence IDA] [pmid 12370247]; go_function: palmitoyltransferase activity [goid GO:0016409] [evidence IDA] [pmid 12370247]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 9243510]; go_process: protein amino acid palmitoylation [goid GO:0018318] [evidence IDA] [pmid 12370247]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence IGI] [pmid 8524293] --- --- --- --- --- S0002672 // span:337-359,380-402,417-439,515-537,570-592 // numtm:5 S0002672 // AKR1 SGDID:S0002672, Chr IV from 998317-996023, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023787 // cdna:GeneFinder chromosome:SGD1:IV:996023:998317:-1 // ensembl // 11 // --- /// GENSCAN00000025308 // cdna:Genscan chromosome:SGD1:IV:996023:998317:-1 // ensembl // 11 // --- /// YDR264C // cdna:known chromosome:SGD1:IV:996023:998317:-1 gene:YDR264C // ensembl // 11 // --- --- No cerevisiae_gene 1.09048772875305 -1.25320070970652 1.52450035082652 -1.05883558795395 1.14855505493653 Max fold change below threshold 4 1.52450035082652 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771820_at YHR143W-A.S1 RNA polymerase subunit, found in RNA polymerase complexes I, II, and III 1.52422006076345 473.723022460938 746.665588378906 RPC10 6360 // transcription from RNA polymerase I promoter // traceable author statement /// 6366 // transcription from RNA polymerase II promoter // traceable author statement /// 6383 // transcription from RNA polymerase III promoter // traceable author statement 5665 // DNA-directed RNA polymerase II, core complex // traceable author statement /// 5666 // DNA-directed RNA polymerase III complex // traceable author statement /// 5736 // DNA-directed RNA polymerase I complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 712.574645996094 467.501159667969 479.944885253906 780.756530761719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR143W-A /GEN=RPC10 /DB_XREF=GI:6321937 /SEG=NC_001140:+387234,387446 /DEF=RNA polymerase II core subunit /NOTE=Rpc10p; go_component: DNA-directed RNA polymerase I complex [goid GO:0005736] [evidence TAS] [pmid 9774381]; go_component: DNA-directed RNA polymerase II, core complex [goid GO:0005665] [evidence TAS] [pmid 9774381]; go_component: DNA-directed RNA polymerase III complex [goid GO:0005666] [evidence TAS] [pmid 9774381]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 9774381]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence TAS]; go_process: transcription from Pol III promoter [goid GO:0006383] [evidence TAS] --- --- --- --- --- --- S0001185 // RPC10 SGDID:S0001185, Chr VIII from 387235-387447, Verified ORF // sgd // 11 // --- /// YHR143W-A // cdna:known chromosome:SGD1:VIII:387235:387447:1 gene:YHR143W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.18000007366279 -1.52422006076345 -1.01136251611058 -1.48470098940448 1.09568384891146 Max fold change below threshold 4 1.52422006076345 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778399_at YBL021C.S1 Subunit of the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex, a transcriptional activator and global regulator of respiratory gene expression; contains sequences contributing to both complex assembly and DNA binding 1.52399991370035 165.562747955322 211.055519104004 HAP3 6109 // regulation of carbohydrate metabolism // traceable author statement /// 6350 // transcription // traceable author statement 5634 // nucleus // inferred from curator /// 16602 // CCAAT-binding factor complex // traceable author statement 16563 // transcriptional activator activity // traceable author statement 192.39518737793 126.24356842041 204.881927490234 229.715850830078 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL021C /GEN=HAP3 /DB_XREF=GI:6319450 /SEG=NC_001134:-181625,182059 /DEF=Subunit of the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex, a transcriptional activator and global regulator of respiratory gene expression; contains sequences contributing to both complex assembly and DNA binding /NOTE=Hap3p; go_component: CCAAT-binding factor complex [goid GO:0016602] [evidence TAS] [pmid 9618445]; go_function: transcriptional activator activity [goid GO:0016563] [evidence TAS] [pmid 9618445]; go_process: regulation of carbohydrate metabolism [goid GO:0006109] [evidence TAS] [pmid 9618445]; go_process: transcription [goid GO:0006350] [evidence TAS] [pmid 9618445] --- --- --- --- --- --- S0000117 // HAP3 SGDID:S0000117, Chr II from 182097-181663, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021121 // cdna:Genscan chromosome:SGD1:II:181663:182097:-1 // ensembl // 11 // --- /// GENEFINDER00000022371 // cdna:GeneFinder chromosome:SGD1:II:181663:182097:-1 // ensembl // 11 // --- /// YBL021C // cdna:known chromosome:SGD1:II:181663:182097:-1 gene:YBL021C // ensembl // 11 // --- --- No cerevisiae_gene -1.0362803839185 -1.52399991370035 1.05186547724444 1.06490152005609 1.19397919439034 Max fold change below threshold 4 1.52399991370035 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775599_at YNL183C.S1 Protein kinase that stabilizes several plasma membrane amino acid transporters by antagonizing their ubiquitin-mediated degradation 1.52334448745771 1212.34741210938 1328.48913574219 NPR1 6808 // regulation of nitrogen utilization // inferred from mutant phenotype 5737 // cytoplasm // traceable author statement 16301 // kinase activity // traceable author statement 1296.48107910156 1331.09973144531 1093.59509277344 1360.49719238281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL183C /GEN=NPR1 /DB_XREF=GI:6324146 /SEG=NC_001146:-293137,295509 /DEF=Protein kinase that stabilizes several plasma membrane amino acid transporters by antagonizing their ubiquitin-mediated degradation /NOTE=Npr1p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 11238915]; go_function: kinase activity [goid GO:0016301] [evidence TAS] [pmid 11238915]; go_process: regulation of nitrogen utilization [goid GO:0006808] [evidence IMP] [pmid 11500493] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 7.0E-57 /// hanks // 3.1.2 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk2 // 3.0E-62 --- --- S0005127 // NPR1 SGDID:S0005127, Chr XIV from 295509-293137, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019894 // cdna:Genscan chromosome:SGD1:XIV:293137:295509:-1 // ensembl // 11 // --- /// GENEFINDER00000020671 // cdna:GeneFinder chromosome:SGD1:XIV:293137:294666:-1 // ensembl // 11 // --- /// YNL183C // cdna:known chromosome:SGD1:XIV:293137:295509:-1 gene:YNL183C // ensembl // 11 // --- --- No cerevisiae_gene -1.52334448745771 1.02670201123779 -1.01096079689896 -1.1855220343149 1.04937682031242 Max fold change below threshold 4 1.52334448745771 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772930_at YDR372C.S1 Non-essential protein of unknown function involved in vacuolar protein sorting; belongs to a family of cytosolic Golgi-associated proteins suggesting that it may play a role in secretion; also detected in the nucleus 1.5232340877705 508.260238647461 760.748962402344 VPS74 6623 // protein-vacuolar targeting // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 752.966247558594 522.19970703125 494.320770263672 768.531677246094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR372C /GEN=VPS74 /DB_XREF=GI:6320580 /SEG=NC_001136:-1221100,1222137 /DEF=Vps74p /NOTE=go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 12134085] --- --- --- --- --- --- S0002780 // VPS74 SGDID:S0002780, Chr IV from 1222139-1221102, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025395 // cdna:Genscan chromosome:SGD1:IV:1221102:1222139:-1 // ensembl // 11 // --- /// YDR372C // cdna:known chromosome:SGD1:IV:1221102:1222139:-1 gene:YDR372C // ensembl // 11 // --- --- No cerevisiae_gene -1.30787791739036 -1.44191242817671 -1.08416684426184 -1.5232340877705 1.02067214797206 Max fold change below threshold 4 1.5232340877705 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776526_at YNL102W.S1 Catalytic subunit of the DNA polymerase alpha-primase complex, required for the initiation of DNA replication during mitotic DNA synthesis and premeiotic DNA synthesis 1.52310993299962 187.823089599609 203.811889648438 POL1 731 // DNA synthesis during DNA repair // inferred from mutant phenotype /// 6269 // DNA replication, synthesis of RNA primer // traceable author statement /// 6270 // DNA replication initiation // traceable author statement /// 6273 // lagging strand elongation // traceable author statement 5657 // replication fork // inferred from direct assay /// 5658 // alpha DNA polymerase:primase complex // traceable author statement 3889 // alpha DNA polymerase activity // traceable author statement 188.021377563477 190.996810913086 184.649368286133 219.602401733398 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL102W /GEN=POL1 /DB_XREF=GI:6324227 /SEG=NC_001146:+430087,434493 /DEF=Catalytic subunit of the DNA polymerase alpha-primase complex, required for the initiation of DNA replication during mitotic DNA synthesis and premeiotic DNA synthesis /NOTE=Pol1p; go_component: alpha DNA polymerase:primase complex [goid GO:0005658] [evidence TAS] [pmid 9745046]; go_function: alpha DNA polymerase activity [goid GO:0003889] [evidence TAS] [pmid 9745046]; go_process: DNA replication initiation [goid GO:0006270] [evidence TAS] [pmid 9745046]; go_process: DNA replication, synthesis of RNA primer [goid GO:0006269] [evidence TAS] [pmid 9745046]; go_process: DNA synthesis during DNA repair [goid GO:0000731] [evidence IMP] [pmid 10025407]; go_process: lagging strand elongation [goid GO:0006273] [evidence TAS] [pmid 9745046] --- --- --- --- --- --- S0005046 // POL1 SGDID:S0005046, Chr XIV from 430087-434493, Verified ORF // sgd // 11 // --- /// GENSCAN00000019951 // cdna:Genscan chromosome:SGD1:XIV:430087:434493:1 // ensembl // 11 // --- /// GENEFINDER00000020432 // cdna:GeneFinder chromosome:SGD1:XIV:430087:434493:1 // ensembl // 11 // --- /// YNL102W // cdna:known chromosome:SGD1:XIV:430087:434493:1 gene:YNL102W // ensembl // 11 // --- --- No cerevisiae_gene 1.52310993299962 1.01582497367144 -1.10270507151466 -1.0182616886732 1.16796507173372 Max fold change below threshold 4 1.52310993299962 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771737_at YNL153C.S1 Subunit of the heterohexameric cochaperone prefoldin complex which binds specifically to cytosolic chaperonin and transfers target proteins to it 1.52303103363473 551.120025634766 666.902130126953 GIM3 7021 // tubulin folding // inferred from mutant phenotype /// 7021 // tubulin folding // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay /// 16272 // prefoldin complex // inferred from sequence similarity /// 16272 // prefoldin complex // inferred from physical interaction 15631 // tubulin binding // inferred from direct assay 606.808776855469 526.749389648438 575.490661621094 726.995483398438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL153C /GEN=GIM3 /DB_XREF=GI:6324176 /SEG=NC_001146:-345669,346058 /DEF=Prefoldin subunit 4; putative homolog of subunit 4 of bovine prefoldin, a chaperone comprised of six subunits /NOTE=Gim3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9463374]; go_component: prefoldin complex [goid GO:0016272] [evidence IPI] [pmid 9463374]; go_component: prefoldin complex [goid GO:0016272] [evidence ISS] [pmid 9630229]; go_function: tubulin binding [goid GO:0015631] [evidence IDA] [pmid 9463374]; go_process: tubulin folding [goid GO:0007021] [evidence IMP,ISS] [pmid 9463374] --- --- --- --- --- --- S0005097 // GIM3 SGDID:S0005097, Chr XIV from 346058-345669, reverse complement, Verified ORF // sgd // 9 // --- /// GENSCAN00000019915 // cdna:Genscan chromosome:SGD1:XIV:345669:346058:-1 // ensembl // 9 // --- /// GENEFINDER00000020631 // cdna:GeneFinder chromosome:SGD1:XIV:345669:346058:-1 // ensembl // 9 // --- /// YNL153C // cdna:known chromosome:SGD1:XIV:345669:346058:-1 gene:YNL153C // ensembl // 9 // --- --- No cerevisiae_gene 1.52303103363473 -1.15198762216025 1.27323549543324 -1.05441984957003 1.19806355993363 Max fold change below threshold 4 1.52303103363473 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780018_at YLR126C.S1 Hypothetical protein 1.52291083555064 260.134140014648 250.590141296387 --- --- 5737 // cytoplasm // inferred from direct assay --- 233.237503051758 165.068359375 355.199920654297 267.942779541016 0.00805663969367743 0.0561522990465164 0.00195312988944352 0.00195312988944352 P M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR126C /GEN=YPS3 /DB_XREF=GI:6323155 /SEG=NC_001144:-394766,395521 /DEF=Hypothetical ORF /NOTE=Ylr126cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004116 // YLR126C SGDID:S0004116, Chr XII from 395521-394766, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017916 // cdna:Genscan chromosome:SGD1:XII:394766:395443:-1 // ensembl // 11 // --- /// YLR126C // cdna:known chromosome:SGD1:XII:394766:395521:-1 gene:YLR126C // ensembl // 11 // --- --- No cerevisiae_gene -1.39588856564167 -1.41297522998876 1.36384927551706 1.52291083555064 1.14879801076226 Max fold change below threshold 4 1.52291083555064 Max fold change below threshold PPMPPP No 2 0 PMPP 0 3 1 No No 2 < x = 3
1780071_at YFR006W.S1 Hypothetical protein 1.52261970359565 879.623474121094 1191.716796875 --- --- 5737 // cytoplasm // inferred from direct assay 8451 // X-Pro aminopeptidase activity // inferred from sequence similarity 1167.10510253906 766.51123046875 992.735717773438 1216.32849121094 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR006W /GEN=SAD1 /DB_XREF=GI:14318528 /SEG=NC_001138:+156139,157746 /DEF=Hypothetical ORF /NOTE=Yfr006wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: X-Pro aminopeptidase activity [goid GO:0008451] [evidence ISS] [pmid 10592175]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001902 // span:7-24 // numtm:1 S0001902 // YFR006W SGDID:S0001902, Chr VI from 156139-157746, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000023248 // cdna:Genscan chromosome:SGD1:VI:156139:157746:1 // ensembl // 11 // --- /// GENEFINDER00000018566 // cdna:GeneFinder chromosome:SGD1:VI:156298:157746:1 // ensembl // 11 // --- /// YFR006W // cdna:known chromosome:SGD1:VI:156139:157746:1 gene:YFR006W // ensembl // 11 // --- --- No cerevisiae_gene 1.32280380820893 -1.52261970359565 1.01139732818739 -1.17564532195609 1.04217562631231 Max fold change below threshold 4 1.52261970359565 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sc-ACT1-3_at AFFX-r2-Sc-ACT1-3 Actin, structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions 1.52224719208458 8811.1083984375 7735.34912109375 ACT1 1 // mitochondrion inheritance // traceable author statement /// 11 // vacuole inheritance // traceable author statement /// 132 // establishment of mitotic spindle orientation // traceable author statement /// 910 // cytokinesis // traceable author statement /// 1300 // chronological cell aging // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 6887 // exocytosis // traceable author statement /// 6897 // endocytosis // traceable author statement /// 6970 // response to osmotic stress // traceable author statement /// 7047 // cell wall organization and biogenesis // traceable author statement /// 7119 // budding cell isotropic bud growth // traceable author statement /// 9306 // protein secretion // traceable author statement /// 16573 // histone acetylation // inferred from direct assay /// 30037 // actin filament reorganization during cell cycle // traceable author statement /// 30050 // vesicle transport along actin filament // traceable author statement /// 30437 // sporulation (sensu Fungi) // traceable author statement /// 30468 // establishment of cell polarity (sensu Fungi) // traceable author statement 123 // histone acetyltransferase complex // inferred from direct assay /// 142 // contractile ring (sensu Saccharomyces) // traceable author statement /// 812 // SWR1 complex // inferred from physical interaction /// 5884 // actin filament // traceable author statement /// 30479 // actin cortical patch // traceable author statement /// 30482 // actin cable // traceable author statement /// 31011 // INO80 complex // inferred from physical interaction /// 43189 // H4/H2A histone acetyltransferase complex // inferred from physical interaction 5200 // structural constituent of cytoskeleton // traceable author statement 9337.001953125 11109.02734375 6513.189453125 6133.6962890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=ACT1 SGD:YFL039C Actin (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- S0001855 // ACT1 SGDID:S0001855, Chr VI from 54695-54686,54377-53260, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018587 // cdna:GeneFinder chromosome:SGD1:VI:53260:54342:-1 // ensembl // 11 // --- /// GENSCAN00000023208 // cdna:Genscan chromosome:SGD1:VI:53260:54342:-1 // ensembl // 11 // --- /// YFL039C // cdna:known chromosome:SGD1:VI:53260:54695:-1 gene:YFL039C // ensembl // 11 // --- --- AFFX_control cerevisiae_gene -1.51893033106603 1.18978526506915 -1.31325716577569 -1.43355294979868 -1.52224719208458 Max fold change below threshold 4 1.52224719208458 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774104_s_at SPAC27D7.09c.S1 --- 1.52214839757356 --- --- --- --- 4.67498922348022 5.08486557006836 6.8781590461731 3.11726641654968 0.466064006090164 0.274170011281967 0.274170011281967 0.129638999700546 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC27D7.09c /DEF=predicted N-terminal signal sequence --- --- --- --- --- --- SPAC27D7.09c // |||predicted N-terminal signal sequence|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- /// SPAC27D7.10c // |||possibly S. pombe specific|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No 1.02831378874464 1.08767428693301 1.52214839757356 1.47126735857003 -1.49970794881712 Max fold change below threshold 4 1.52214839757356 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775314_at YOR021C.S1 Hypothetical protein 1.52186953096686 2185.17626953125 1519.31024169922 --- --- --- --- 1460.79211425781 2223.13500976563 2147.21752929688 1577.82836914063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR021C /GEN=HSP10 /DB_XREF=GI:6324595 /SEG=NC_001147:-372797,373438 /DEF=Hypothetical ORF /NOTE=Yor021cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005547 // YOR021C SGDID:S0005547, Chr XV from 373438-372797, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017481 // cdna:Genscan chromosome:SGD1:XV:372797:373438:-1 // ensembl // 11 // --- /// YOR021C // cdna:known chromosome:SGD1:XV:372797:373438:-1 gene:YOR021C // ensembl // 11 // --- --- No cerevisiae_gene 1.3078427173025 1.52186953096686 1.22314469964382 1.46989945272796 1.08011835068146 Max fold change below threshold 4 1.52186953096686 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775962_at YPL146C.S1 Nucleolar protein; involved in biogenesis of the 60S subunit of the ribosome; interacts with rRNA processing factors Cbf5p and Nop2p; null mutant is viable but growth is severely impaired 1.5213404755545 217.892204284668 274.422882080078 NOP53 7046 // ribosome biogenesis // inferred from mutant phenotype /// 7046 // ribosome biogenesis // inferred from physical interaction /// 30489 // processing of 27S pre-rRNA // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay 5515 // protein binding // inferred from physical interaction 267.588714599609 259.894317626953 175.890090942383 281.257049560547 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL146C /GEN=PXA1 /DB_XREF=GI:6325111 /SEG=NC_001148:-276161,277528 /DEF=Protein required for cell viability /NOTE=Ypl146cp; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 10684247]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006067 // YPL146C SGDID:S0006067, Chr XVI from 277528-276161, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017077 // cdna:Genscan chromosome:SGD1:XVI:276161:277528:-1 // ensembl // 11 // --- /// GENEFINDER00000020883 // cdna:GeneFinder chromosome:SGD1:XVI:276161:277528:-1 // ensembl // 11 // --- /// YPL146C // cdna:known chromosome:SGD1:XVI:276161:277528:-1 gene:YPL146C // ensembl // 11 // --- --- No cerevisiae_gene 1.49753151876859 -1.02960586842726 -1.52130325836278 -1.5213404755545 1.05107963906994 Max fold change below threshold 4 1.5213404755545 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775453_at YNL321W.S1 Protein of unknown function, potential Cdc28p substrate 1.52120238184586 1548.12701416016 1904.07312011719 --- --- --- --- 1892.76330566406 1387.150390625 1709.10363769531 1915.38293457031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL321W /GEN=KRE1 /DB_XREF=GI:6324008 /SEG=NC_001146:+34695,37421 /DEF=Protein of unknown function, potential Cdc28p substrate /NOTE=Ynl321wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005265 // span:242-264,414-436,496-515,525-547,560-582,592-614,626-648,683-705,749-771,781-803,815-837,857-876,883-905 // numtm:13 S0005265 // YNL321W SGDID:S0005265, Chr XIV from 34695-37421, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019786 // cdna:Genscan chromosome:SGD1:XIV:34695:37421:1 // ensembl // 11 // --- /// GENEFINDER00000020682 // cdna:GeneFinder chromosome:SGD1:XIV:34695:37421:1 // ensembl // 11 // --- /// YNL321W // cdna:known chromosome:SGD1:XIV:34695:37421:1 gene:YNL321W // ensembl // 11 // --- --- No cerevisiae_gene -1.52120238184586 -1.36449754724234 -1.07939862550252 -1.10745964370915 1.0119505850724 Max fold change below threshold 4 1.52120238184586 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770456_at YDR001C.S1 Neutral trehalase, degrades trehalose; required for thermotolerance and may mediate resistance to other cellular stresses; may be phosphorylated by Cdc28p 1.5211553922419 4693.35888671875 3346.16687011719 NTH1 5993 // trehalose catabolism // traceable author statement /// 6950 // response to stress // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5829 // cytosol // traceable author statement 4555 // alpha,alpha-trehalase activity // traceable author statement 3512.859375 5343.60498046875 4043.11279296875 3179.47436523438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR001C /GEN=NTH1 /DB_XREF=GI:6320204 /SEG=NC_001136:-450217,452472 /DEF=Neutral trehalase, degrades trehalose; required for thermotolerance and may mediate resistance to other cellular stresses; may be phosphorylated by Cdc28p /NOTE=Nth1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 9308367]; go_function: alpha,alpha-trehalase activity [goid GO:0004555] [evidence TAS] [pmid 9308367]; go_process: response to stress [goid GO:0006950] [evidence TAS] [pmid 9308367]; go_process: trehalose catabolism [goid GO:0005993] [evidence TAS] [pmid 9308367] --- --- --- --- --- --- S0002408 // NTH1 SGDID:S0002408, Chr IV from 452472-450217, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023754 // cdna:GeneFinder chromosome:SGD1:IV:450217:452472:-1 // ensembl // 11 // --- /// GENSCAN00000025099 // cdna:Genscan chromosome:SGD1:IV:450217:452472:-1 // ensembl // 11 // --- /// YDR001C // cdna:known chromosome:SGD1:IV:450217:452472:-1 gene:YDR001C // ensembl // 11 // --- --- No cerevisiae_gene -1.20793502707779 1.5211553922419 -1.26559118722442 1.15094638337715 -1.10485538534639 Max fold change below threshold 4 1.5211553922419 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772975_at YNL178W.S1 Protein component of the small (40S) ribosomal subunit, has apurinic/apyrimidinic (AP) endonuclease activity; essential for viability; has similarity to E. coli S3 and rat S3 ribosomal proteins 1.52113824390541 6175.34692382813 6519.94482421875 RPS3 6412 // protein biosynthesis // traceable author statement /// 6974 // response to DNA damage stimulus // inferred from direct assay 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 7649.55615234375 7321.85693359375 5028.8369140625 5390.33349609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL178W /GEN=RPS3 /DB_XREF=GI:6324151 /SEG=NC_001146:+302680,303402 /DEF=Protein component of the small (40S) ribosomal subunit, has apurinic/apyrimidinic (AP) endonuclease activity; essential for viability; has similarity to E. coli S3 and rat S3 ribosomal proteins /NOTE=Rps3p; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: response to DNA damage stimulus [goid GO:0006974] [evidence IDA] [pmid 11561734] --- --- --- --- --- --- S0005122 // RPS3 SGDID:S0005122, Chr XIV from 302680-303402, Verified ORF // sgd // 11 // --- /// D25285 // Yeast mRNA for ribosomal protein YS3, complete cds. // gb // 11 // --- /// GENSCAN00000019897 // cdna:Genscan chromosome:SGD1:XIV:302680:303402:1 // ensembl // 11 // --- /// GENEFINDER00000020443 // cdna:GeneFinder chromosome:SGD1:XIV:302680:303402:1 // ensembl // 11 // --- /// YNL178W // cdna:known chromosome:SGD1:XIV:302680:303402:1 gene:YNL178W // ensembl // 11 // --- --- No cerevisiae_gene -1.28379116336066 -1.04475629908124 -1.51471643538326 -1.52113824390541 -1.41912483854426 Max fold change below threshold 4 1.52113824390541 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775131_at YML092C.S1 20S proteasome beta-type subunit 1.52060728707331 1843.87963867188 2375.51806640625 PRE8 6511 // ubiquitin-dependent protein catabolism // traceable author statement 19773 // proteasome core complex, alpha-subunit complex (sensu Eukaryota) // traceable author statement /// 19773 // proteasome core complex, alpha-subunit complex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement 2437.8642578125 1603.21752929688 2084.54174804688 2313.171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML092C /GEN=PRE8 /DB_XREF=GI:6323547 /SEG=NC_001145:-85987,86739 /DEF=20S proteasome beta-type subunit /NOTE=Pre8p; go_component: proteasome core complex (sensu Eukarya) [goid GO:0005839] [evidence TAS] [pmid 10872471]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 10872471]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10872471] --- --- --- --- --- --- S0004557 // PRE8 SGDID:S0004557, Chr XIII from 86739-85987, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018641 // cdna:Genscan chromosome:SGD1:XIII:85987:86739:-1 // ensembl // 11 // --- /// GENEFINDER00000022071 // cdna:GeneFinder chromosome:SGD1:XIII:85987:86739:-1 // ensembl // 11 // --- /// YML092C // cdna:known chromosome:SGD1:XIII:85987:86739:-1 gene:YML092C // ensembl // 11 // --- --- No cerevisiae_gene -1.44009593436313 -1.52060728707331 1.0420828538043 -1.16949649010228 -1.05390536871044 Max fold change below threshold 4 1.52060728707331 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779038_at YLR408C.S1 Hypothetical protein 1.52018727629352 299.339042663574 380.368423461914 --- --- 5768 // endosome // inferred from direct assay --- 355.599792480469 364.759674072266 233.918411254883 405.137054443359 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR408C /GEN=RPL31B /DB_XREF=GI:6323440 /SEG=NC_001144:-933882,934250 /DEF=Hypothetical ORF /NOTE=Ylr408cp; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004400 // YLR408C SGDID:S0004400, Chr XII from 934250-933882, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// YLR408C // cdna:known chromosome:SGD1:XII:933882:934250:-1 gene:YLR408C // ensembl // 10 // --- --- No cerevisiae_gene 1.15282741750251 1.02575896214085 1.30616726629108 -1.52018727629352 1.13930621729936 Max fold change below threshold 4 1.52018727629352 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776654_at YML068W.S1 Protein that modulates the efficiency of translation termination, interacts with translation release factors eRF1 (Sup45p) and eRF3 (Sup35p) in vitro, contains a zinc finger domain characteristic of the TRIAD class of proteins 1.52015104815543 269.045288085938 262.275741577148 ITT1 6449 // regulation of translational termination // inferred from mutant phenotype --- --- 273.810974121094 221.755615234375 316.3349609375 250.740509033203 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML068W /GEN=ITT1 /DB_XREF=GI:6323572 /SEG=NC_001145:+137550,138944 /DEF=Protein that modulates the efficiency of translation termination, interacts with translation release factors eRF1 (Sup45p) and eRF3 (Sup35p) in vitro, contains a zinc finger domain characteristic of the TRIAD class of proteins /NOTE=Itt1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: regulation of translational termination [goid GO:0006449] [evidence IMP] [pmid 11570975] --- --- --- --- --- --- S0004533 // ITT1 SGDID:S0004533, Chr XIII from 137550-138944, Verified ORF // sgd // 11 // --- /// GENSCAN00000018659 // cdna:Genscan chromosome:SGD1:XIII:137550:138944:1 // ensembl // 11 // --- /// GENEFINDER00000022042 // cdna:GeneFinder chromosome:SGD1:XIII:137550:138944:1 // ensembl // 11 // --- /// YML068W // cdna:known chromosome:SGD1:XIII:137550:138944:1 gene:YML068W // ensembl // 11 // --- --- No cerevisiae_gene -1.45108304335085 -1.23474201017053 1.52015104815543 1.15530417271588 -1.09200932540516 Max fold change below threshold 4 1.52015104815543 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775436_at YBL011W.S1 Glycerol 3-phosphate/dihydroxyacetone phosphate dual substrate-specific sn-1 acyltransferase of the glycerolipid biosynthesis pathway, prefers 16-carbon fatty acids, similar to Gpt2p, gene is constitutively transcribed 1.52011184547754 1117.69384765625 768.449584960938 SCT1 8654 // phospholipid biosynthesis // inferred from genetic interaction /// 8654 // phospholipid biosynthesis // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay 4366 // glycerol-3-phosphate O-acyltransferase activity // inferred from genetic interaction /// 4366 // glycerol-3-phosphate O-acyltransferase activity // inferred from mutant phenotype /// 4366 // glycerol-3-phosphate O-acyltransferase activity // inferred from direct assay 741.466613769531 1108.27551269531 1127.11218261719 795.432556152344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL011W /GEN=SCT1 /DB_XREF=GI:6319459 /SEG=NC_001134:+203503,205782 /DEF=High copy suppresor of choline-transport mutants /NOTE=Sct1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: glycerol-3-phosphate O-acyltransferase activity [goid GO:0004366] [evidence IDA,IGI,IMP] [pmid 11544256]; go_process: phospholipid biosynthesis [goid GO:0008654] [evidence IGI,IMP] [pmid 11544256] --- --- --- --- --- S0000107 // span:49-66,435-457,494-516,523-545 // numtm:4 S0000107 // SCT1 SGDID:S0000107, Chr II from 203541-205820, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022362 // cdna:GeneFinder chromosome:SGD1:II:203940:205820:1 // ensembl // 11 // --- /// YBL011W // cdna:known chromosome:SGD1:II:203541:205820:1 gene:YBL011W // ensembl // 11 // --- --- No cerevisiae_gene 1.3315557569939 1.49470723578634 -1.41911878860447 1.52011184547754 1.07278270036793 Max fold change below threshold 4 1.52011184547754 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769891_at YNL055C.S1 Putative mitochondrial porin (voltage-dependent anion channel), related to Por1p but not required for mitochondrial membrane permeability or mitochondrial osmotic stability /// Mitochondrial porin (voltage-dependent anion channel), outer membrane protein required for the maintenance of mitochondrial osmotic stability and mitochondrial membrane permeability 1.51983871209125 6960.45141601563 4946.52587890625 POR2 /// POR1 6811 // ion transport // inferred from genetic interaction /// 6811 // ion transport // inferred from sequence similarity /// 6811 // ion transport // inferred from direct assay /// 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5741 // mitochondrial outer membrane // inferred from direct assay 8308 // voltage-gated ion-selective channel activity // inferred from genetic interaction /// 8308 // voltage-gated ion-selective channel activity // inferred from sequence similarity /// 8308 // voltage-gated ion-selective channel activity // inferred from direct assay 5709.65576171875 8677.755859375 5243.14697265625 4183.39599609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL055C /GEN=POR1 /DB_XREF=GI:6324273 /SEG=NC_001146:-517992,518843 /DEF=Mitochondrial porin (voltage-dependent anion channel), outer membrane protein required for the maintenance of mitochondrial osmotic stability and mitochondrial membrane permeability /NOTE=Por1p; go_component: mitochondrial outer membrane [goid GO:0005741] [evidence IDA] [pmid 7499333]; go_function: voltage-dependent ion-selective channel activity [goid GO:0008308] [evidence IDA] [pmid 9593723]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 2438132]; go_process: ion transport [goid GO:0006811] [evidence IDA] [pmid 9593723]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence IMP] [pmid 11488609] --- --- --- --- --- --- S0005000 // POR1 SGDID:S0005000, Chr XIV from 518844-517993, reverse complement, Verified ORF // sgd // 11 // --- /// X02324 // Yeast mRNA for outer mitochondrial membrane protein porin. // gb // 11 // --- /// M34907 // Yeast voltage-dependent anion-selective channel (VDAC) protein mRNA, complete cds. // gb // 10 // --- /// GENSCAN00000019988 // cdna:Genscan chromosome:SGD1:XIV:517993:518844:-1 // ensembl // 11 // --- /// GENEFINDER00000020681 // cdna:GeneFinder chromosome:SGD1:XIV:517993:518844:-1 // ensembl // 11 // --- /// YNL055C // cdna:known chromosome:SGD1:XIV:517993:518844:-1 gene:YNL055C // ensembl // 11 // --- --- No cerevisiae_gene -1.27318897860702 1.51983871209125 -1.26958880235352 -1.08897495940804 -1.3648375069083 Max fold change below threshold 4 1.51983871209125 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773760_at YBL102W.S1 Non-essential tetra-spanning membrane protein found mostly in the late Golgi, can suppress some sed5 alleles; may be part of the transport machinery, but precise function is unknown; similar to mammalian syntaxin 5 1.51973889146135 2020.82342529297 1590.66955566406 SFT2 6895 // Golgi to endosome transport // inferred from mutant phenotype /// 6895 // Golgi to endosome transport // inferred from genetic interaction 139 // Golgi membrane // inferred from direct assay --- 1542.47375488281 1767.72839355469 2273.91845703125 1638.86535644531 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL102W /GEN=SFT2 /DB_XREF=GI:6319366 /SEG=NC_001134:+24098,24745 /DEF=similar to mammalian syntaxin 5 /NOTE=Sft2p; go_component: Golgi membrane [goid GO:0000139] [evidence IDA] [pmid 9725919]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi to endosome transport [goid GO:0006895] [evidence IGI,IMP] [pmid 10406798] --- --- --- --- --- S0000198 // span:82-104,114-136,148-165,169-191 // numtm:4 S0000198 // SFT2 SGDID:S0000198, Chr II from 24098-24745, Verified ORF // sgd // 10 // --- /// YBL102W // cdna:known chromosome:SGD1:II:24098:24745:1 gene:YBL102W // ensembl // 10 // --- --- No cerevisiae_gene -1.51973889146135 1.14603466539305 1.34550459027797 1.4742023647618 1.06249156671701 Max fold change below threshold 4 1.51973889146135 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769684_at YBR110W.S1 Mannosyltransferase, involved in asparagine-linked glycosylation in the endoplasmic reticulum (ER); essential for viability, mutation is functionally complemented by human ortholog 1.51953033749977 490.444152832031 736.995208740234 ALG1 6487 // N-linked glycosylation // inferred from mutant phenotype /// 6490 // oligosaccharide-lipid intermediate assembly // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from physical interaction /// 16021 // integral to membrane // inferred from sequence similarity 19187 // beta-1,4-mannosyltransferase activity // inferred from direct assay 682.483825683594 531.747009277344 449.141296386719 791.506591796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR110W /GEN=ALG1 /DB_XREF=GI:6319586 /SEG=NC_001134:+458828,460177 /DEF=Mannosyltransferase, involved in asparagine-linked glycosylation in the endoplasmic reticulum (ER) ; essential for viability, mutation is functionally complemented by human ortholog /NOTE=Alg1p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 2182636]; go_function: beta-1,4-mannosyltransferase activity [goid GO:0019187] [evidence IDA] [pmid 6368538]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IMP] [pmid 6369318] --- --- --- --- --- S0000314 // span:10-32 // numtm:1 S0000314 // ALG1 SGDID:S0000314, Chr II from 458866-460215, Verified ORF // sgd // 11 // --- /// GENSCAN00000021228 // cdna:Genscan chromosome:SGD1:II:459433:460215:1 // ensembl // 11 // --- /// GENEFINDER00000022182 // cdna:GeneFinder chromosome:SGD1:II:459481:460215:1 // ensembl // 11 // --- /// YBR110W // cdna:known chromosome:SGD1:II:458866:460215:1 gene:YBR110W // ensembl // 11 // --- --- No cerevisiae_gene 1.02695984506987 -1.28347468584939 1.19834356050427 -1.51953033749977 1.15974410236621 Max fold change below threshold 4 1.51953033749977 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770518_at YDL103C.S1 UDP-N-acetylglucosamine pyrophosphorylase, catalyzes the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), which is important in cell wall biosynthesis, protein N-glycosylation, and GPI anchor biosynthesis 1.51947960193563 328.798141479492 427.307510375977 QRI1 6048 // UDP-N-acetylglucosamine biosynthesis // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3977 // UDP-N-acetylglucosamine diphosphorylase activity // inferred from direct assay 401.021911621094 263.920562744141 393.675720214844 453.593109130859 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL103C /GEN=QRI1 /DB_XREF=GI:6320100 /SEG=NC_001136:-275148,276581 /DEF=UDP-N-acetylglucosamine pyrophosphorylase /NOTE=Qri1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: UDP-N-acetylglucosamine diphosphorylase activity [goid GO:0003977] [evidence IDA] [pmid 9603950]; go_process: UDP-N-acetylglucosamine biosynthesis [goid GO:0006048] [evidence IDA] [pmid 9603950] --- --- --- --- --- --- S0002261 // QRI1 SGDID:S0002261, Chr IV from 276581-275148, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023817 // cdna:GeneFinder chromosome:SGD1:IV:275148:276581:-1 // ensembl // 11 // --- /// GENSCAN00000025022 // cdna:Genscan chromosome:SGD1:IV:275148:276581:-1 // ensembl // 11 // --- /// YDL103C // cdna:known chromosome:SGD1:IV:275148:276581:-1 gene:YDL103C // ensembl // 11 // --- --- No cerevisiae_gene 1.00168324545614 -1.51947960193563 -1.03217710920351 -1.01866051429903 1.13109307991988 Max fold change below threshold 4 1.51947960193563 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778403_at YNL091W.S1 Protein of unknown function, mediates sensitivity to salt stress; interacts physically with the splicing factor Msl1p and also displays genetic interaction with MSL1 1.51946055637671 1943.76892089844 2035.78912353516 NST1 9651 // response to salt stress // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 2012.20666503906 1841.00341796875 2046.53442382813 2059.37158203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL091W /GEN=NST1 /DB_XREF=GI:6324238 /SEG=NC_001146:+452408,456130 /DEF=Protein of unknown function, mediates sensitivity to salt stress; interacts physically with the splicing factor Msl1p and also displays genetic interaction with MSL1 /NOTE=Nst1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to salt stress [goid GO:0009651] [evidence IMP] [pmid 11816027] --- --- --- --- scop // a.4.1.Centromere-binding // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding // 5.69999980926514 --- S0005035 // NST1 SGDID:S0005035, Chr XIV from 452408-456130, Verified ORF // sgd // 11 // --- /// GENSCAN00000019961 // cdna:Genscan chromosome:SGD1:XIV:452408:461990:1 // ensembl // 11 // --- /// GENEFINDER00000020423 // cdna:GeneFinder chromosome:SGD1:XIV:452408:456130:1 // ensembl // 11 // --- /// YNL091W // cdna:known chromosome:SGD1:XIV:452408:456130:1 gene:YNL091W // ensembl // 11 // --- --- No cerevisiae_gene -1.51946055637671 -1.09299452972184 -1.21016416213149 1.01705975801864 1.02343940004357 Max fold change below threshold 4 1.51946055637671 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779643_at YDR035W.S1 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase, catalyzes the first step in aromatic amino acid biosynthesis and is feedback-inhibited by phenylalanine 1.5189566292744 4138.06005859375 4870.25756835938 ARO3 9073 // aromatic amino acid family biosynthesis // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 3849 // 3-deoxy-7-phosphoheptulonate synthase activity // inferred from direct assay 4968.28759765625 3325.7060546875 4950.4140625 4772.2275390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR035W /GEN=ARO3 /DB_XREF=GI:6320240 /SEG=NC_001136:+521811,522923 /DEF=3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase, catalyzes the first step in aromatic amino acid biosynthesis and is feedback-inhibited by phenylalanine /NOTE=Aro3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: 3-deoxy-7-phosphoheptulonate synthase activity [goid GO:0003849] [evidence IDA] [pmid 2880280]; go_process: aromatic amino acid family biosynthesis [goid GO:0009073] [evidence TAS] --- --- --- --- --- --- S0002442 // ARO3 SGDID:S0002442, Chr IV from 521812-522924, Verified ORF // sgd // 11 // --- /// GENSCAN00000025123 // cdna:Genscan chromosome:SGD1:IV:521812:522924:1 // ensembl // 11 // --- /// GENEFINDER00000023779 // cdna:GeneFinder chromosome:SGD1:IV:522175:522924:1 // ensembl // 11 // --- /// YDR035W // cdna:known chromosome:SGD1:IV:521812:522924:1 gene:YDR035W // ensembl // 11 // --- --- No cerevisiae_gene -1.06094981571893 -1.49390460730995 -1.5189566292744 -1.0036105131673 -1.04108355207058 Max fold change below threshold 4 1.5189566292744 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775959_at YGR169C-A.S1 Identified by homology to Ashbya gossypii 1.51893078164466 325.971572875977 388.477569580078 --- --- --- --- 368.335021972656 369.897888183594 282.045257568359 408.6201171875 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR169C-A /GEN=PUS6 /DB_XREF=GI:33438798 /SEG=NC_001139:-836390,836668 /DEF=Identified by homology to Ashbya gossypii /NOTE=Ygr169c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028521 // YGR169C-A SGDID:S0028521, Chr VII from 836670-836392, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENEFINDER00000021729 // cdna:GeneFinder chromosome:SGD1:VII:836392:836670:-1 // ensembl // 10 // --- /// YGR169C-A // cdna:known chromosome:SGD1:VII:836392:836670:-1 gene:YGR169C-A // ensembl // 10 // --- --- No cerevisiae_gene 1.51893078164466 1.00424305623334 -1.25026435624283 -1.30594297223162 1.1093707978109 Max fold change below threshold 4 1.51893078164466 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774138_at YJR065C.S1 Essential component of the Arp2/3 complex, which is a highly conserved actin nucleation center required for the motility and integrity of actin patches; involved in endocytosis and membrane growth and polarity 1.51892527310267 2872.171875 3041.34631347656 ARP3 1 // mitochondrion inheritance // traceable author statement /// 7015 // actin filament organization // inferred from mutant phenotype 5885 // Arp2/3 protein complex // inferred from direct assay 3779 // actin binding // traceable author statement /// 5200 // structural constituent of cytoskeleton // traceable author statement 3131.2607421875 2847.18041992188 2897.16333007813 2951.43188476563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR065C /GEN=ARP3 /DB_XREF=GI:6322525 /SEG=NC_001142:-557723,559072 /DEF=actin-related gene /NOTE=Arp3p; go_component: Arp2/3 protein complex [goid GO:0005885] [evidence IDA] [pmid 10377407]; go_function: actin binding [goid GO:0003779] [evidence TAS] [pmid 10377407]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence TAS] [pmid 10377407]; go_process: actin filament organization [goid GO:0007015] [evidence IMP] [pmid 10377407] --- --- --- --- --- --- S0003826 // ARP3 SGDID:S0003826, Chr X from 559072-557723, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024185 // cdna:Genscan chromosome:SGD1:X:557723:559042:-1 // ensembl // 11 // --- /// GENEFINDER00000024317 // cdna:GeneFinder chromosome:SGD1:X:557723:559042:-1 // ensembl // 11 // --- /// YJR065C // cdna:known chromosome:SGD1:X:557723:559072:-1 gene:YJR065C // ensembl // 11 // --- --- No cerevisiae_gene -1.51892527310267 -1.09977601710025 -1.23877996972603 -1.08080228328137 -1.06092936054194 Max fold change below threshold 4 1.51892527310267 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778173_at YOR241W.S1 Folylpolyglutamate synthetase, catalyzes extension of the glutamate chains of the folate coenzymes, required for methionine synthesis and for maintenance of mitochondrial DNA, present in both the cytoplasm and mitochondria 1.51871369547938 477.994003295898 430.324584960938 MET7 6730 // one-carbon compound metabolism // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4326 // tetrahydrofolylpolyglutamate synthase activity // inferred from direct assay 414.378997802734 432.674285888672 523.313720703125 446.270172119141 0.000732421991415322 0.00415039015933871 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR241W /GEN=MET7 /DB_XREF=GI:6324815 /SEG=NC_001147:+786995,788641 /DEF=Folylpolyglutamate synthetase, catalyzes extension of the glutamate chains of the folate coenzymes, required for methionine synthesis and for maintenance of mitochondrial DNA, present in both the cytoplasm and mitochondria /NOTE=Met7p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10775416]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 10775416]; go_function: tetrahydrofolylpolyglutamate synthase activity [goid GO:0004326] [evidence IDA] [pmid 10775416]; go_process: one-carbon compound metabolism [goid GO:0006730] [evidence IMP] [pmid 10775416] --- --- --- --- --- S0005767 // span:38-57 // numtm:1 S0005767 // MET7 SGDID:S0005767, Chr XV from 786995-788641, Verified ORF // sgd // 11 // --- /// GENSCAN00000017665 // cdna:Genscan chromosome:SGD1:XV:787181:788641:1 // ensembl // 11 // --- /// GENEFINDER00000022734 // cdna:GeneFinder chromosome:SGD1:XV:787181:788641:1 // ensembl // 11 // --- /// YOR241W // cdna:known chromosome:SGD1:XV:786995:788641:1 gene:YOR241W // ensembl // 11 // --- --- No cerevisiae_gene 1.37322893887639 1.04415109883211 1.51871369547938 1.26288668942688 1.07696136745711 Max fold change below threshold 4 1.51871369547938 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771944_at YIL013C.S1 Membrane protein of the ATP-binding cassette (ABC) transporter superfamily, involved in multiple drug resistance, mediates sterol uptake when sterol biosynthesis is compromised, regulated by Pdr1p, required for anaerobic growth 1.51858645332905 98.6572799682617 143.695777893066 PDR11 15918 // sterol transport // inferred from mutant phenotype 16020 // membrane // inferred from sequence similarity 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from sequence similarity 131.546508789063 86.6243133544922 110.690246582031 155.84504699707 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL013C /GEN=PDR11 /DB_XREF=GI:6322177 /SEG=NC_001141:-328205,332440 /DEF=ATP-dependent permease, member of ATP-binding cassette (ABC) transporter family /NOTE=Pdr11p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 11321575]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence ISS] [pmid 11321575]; go_process: sterol transport [goid GO:0015918] [evidence IMP] [pmid 12077145] --- --- --- --- --- S0001275 // span:384-406,413-435,463-485,498-520,525-547,636-658,1089-1111,1123-1142,1169-1191,1204-1226,1236-1258,1357-1379 // numtm:12 S0001275 // PDR11 SGDID:S0001275, Chr IX from 332440-328205, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016466 // cdna:Genscan chromosome:SGD1:IX:328205:332440:-1 // ensembl // 11 // --- /// GENEFINDER00000019080 // cdna:GeneFinder chromosome:SGD1:IX:328205:332440:-1 // ensembl // 11 // --- /// YIL013C // cdna:known chromosome:SGD1:IX:328205:332440:-1 gene:YIL013C // ensembl // 11 // --- --- No cerevisiae_gene -1.30869893705988 -1.51858645332905 1.19583200711933 -1.18842005371788 1.18471442862061 Max fold change below threshold 4 1.51858645332905 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775696_at YIL153W.S1 Activator of the phosphotyrosyl phosphatase activity of PP2A; regulates G1 phase progression, the G2/M phase transition, microtubule dynamics, the osmoresponse, bud morphogenesis and DNA repair; subunit of the Tap42p-Sit4p-Rrd1p complex 1.51828495303661 978.896728515625 1369.49133300781 RRD1 6281 // DNA repair // inferred from direct assay /// 6281 // DNA repair // inferred from mutant phenotype /// 6970 // response to osmotic stress // inferred from mutant phenotype /// 6970 // response to osmotic stress // inferred from genetic interaction /// 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from mutant phenotype 267 // cell fraction // inferred from direct assay /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8601 // protein phosphatase type 2A regulator activity // inferred from genetic interaction /// 8601 // protein phosphatase type 2A regulator activity // inferred from mutant phenotype /// 8601 // protein phosphatase type 2A regulator activity // inferred from sequence similarity 1281.87805175781 844.29345703125 1113.5 1457.10461425781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL153W /GEN=RRD1 /DB_XREF=GI:6322038 /SEG=NC_001141:+55198,56379 /DEF=Resistant to Rapamycin Deletion /NOTE=Rrd1p; go_component: cell fraction [goid GO:0000267] [evidence IDA] [pmid 7813481]; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 9737869]; go_function: protein phosphatase type 2A regulator activity [goid GO:0008601] [evidence IGI,ISS] [pmid 10660069]; go_process: DNA repair [goid GO:0006281] [evidence IDA] [pmid 9705277]; go_process: mitotic spindle assembly (sensu Fungi) [goid GO:0030472] [evidence IMP] [pmid 11262194]; go_process: response to osmotic stress [goid GO:0006970] [evidence IGI,IMP] [pmid 10660069] --- --- --- --- scop // a.3.1.Quinohemoprotein amine dehydrogenase A chain, domains 1 an // All alpha proteins; Cytochrome c; Cytochrome c; Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 // 3.79999995231628 --- S0001415 // RRD1 SGDID:S0001415, Chr IX from 55198-56379, Verified ORF // sgd // 10 // --- /// GENSCAN00000016360 // cdna:Genscan chromosome:SGD1:IX:55198:56379:1 // ensembl // 10 // --- /// GENEFINDER00000019028 // cdna:GeneFinder chromosome:SGD1:IX:55198:56379:1 // ensembl // 10 // --- /// YIL153W // cdna:known chromosome:SGD1:IX:55198:56379:1 gene:YIL153W // ensembl // 10 // --- --- No cerevisiae_gene -1.01480987339066 -1.51828495303661 1.30493750919543 -1.15121513404384 1.1366951889532 Max fold change below threshold 4 1.51828495303661 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773281_at YGL163C.S1 DNA-dependent ATPase, stimulates strand exchange by modifying the topology of double-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; member of the SWI/SNF family 1.5182035726977 600.873870849609 611.504669189453 RAD54 722 // telomerase-independent telomere maintenance // inferred from mutant phenotype /// 6338 // chromatin remodeling // inferred from direct assay /// 30491 // heteroduplex formation // inferred from direct assay /// 45002 // double-strand break repair via single-strand annealing // inferred from mutant phenotype /// 45003 // double-strand break repair via synthesis-dependent strand annealing // traceable author statement 5634 // nucleus // inferred from mutant phenotype 3916 // DNA topoisomerase activity // inferred from direct assay /// 8094 // DNA-dependent ATPase activity // inferred from direct assay 582.547424316406 597.49951171875 604.248229980469 640.4619140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL163C /GEN=RAD54 /DB_XREF=GI:6321275 /SEG=NC_001139:-193711,196407 /DEF=DNA-dependent ATPase, stimulates strand exchange by modifying the topology of double-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; member of the SWI/SNF family /NOTE=Rad54p; go_component: nucleus [goid GO:0005634] [evidence IMP] [pmid 12399378]; go_function: DNA supercoiling activity [goid GO:0009387] [evidence IDA] [pmid 10506208]; go_function: DNA-dependent ATPase activity [goid GO:0008094] [evidence IDA] [pmid 10506208]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 12577053]; go_process: double-strand break repair via break-induced replication [goid GO:0000727] [evidence IMP] [pmid 11238940]; go_process: double-strand break repair via single-strand annealing [goid GO:0045002] [evidence IMP] [pmid 8849880]; go_process: double-strand break repair via synthesis-dependent strand annealing [goid GO:0045003] [evidence TAS] [pmid 10357855]; go_process: heteroduplex formation [goid GO:0030491] [evidence IDA] [pmid 10506208]; go_process: telomerase-independent telomere maintenance [goid GO:0000722] [evidence IMP] [pmid 11238918] --- --- --- --- --- --- S0003131 // RAD54 SGDID:S0003131, Chr VII from 196409-193713, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019225 // cdna:Genscan chromosome:SGD1:VII:193713:196409:-1 // ensembl // 11 // --- /// GENEFINDER00000021571 // cdna:GeneFinder chromosome:SGD1:VII:193713:196409:-1 // ensembl // 11 // --- /// YGL163C // cdna:known chromosome:SGD1:VII:193713:196409:-1 gene:YGL163C // ensembl // 11 // --- --- No cerevisiae_gene -1.5182035726977 1.02566672991455 -1.1087913393881 1.03725156915684 1.09941592277067 Max fold change below threshold 4 1.5182035726977 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775620_at YNL215W.S1 Protein that associates with the INO80 chromatin remodeling complex under low-salt conditions 1.51812729900838 544.18473815918 555.008666992188 IES2 --- 5634 // nucleus // inferred from direct assay --- 510.07177734375 456.141021728516 632.228454589844 599.945556640625 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL215W /GEN=IES2 /DB_XREF=GI:6324114 /SEG=NC_001146:+244467,245429 /DEF=Protein that associates with the INO80 chromatin remodeling complex under low-salt conditions /NOTE=Ies2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005159 // IES2 SGDID:S0005159, Chr XIV from 244467-245429, Verified ORF // sgd // 10 // --- /// GENSCAN00000019869 // cdna:Genscan chromosome:SGD1:XIV:244467:245429:1 // ensembl // 10 // --- /// GENEFINDER00000020702 // cdna:GeneFinder chromosome:SGD1:XIV:244467:245429:1 // ensembl // 10 // --- /// YNL215W // cdna:known chromosome:SGD1:XIV:244467:245429:1 gene:YNL215W // ensembl // 10 // --- --- No cerevisiae_gene -1.51812729900838 -1.11823263650103 1.21907472715141 1.23948919087866 1.17619829853144 Max fold change below threshold 4 1.51812729900838 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771321_at YCR052W.S1 One of 15 subunits of the 'Remodel the Structure of Chromatin' (RSC) complex; essential for mitotic growth; homolog of SWI/SNF subunit Swp73p 1.51792589980871 336.249298095703 502.247634887695 RSC6 6338 // chromatin remodeling // inferred from sequence similarity /// 6338 // chromatin remodeling // inferred from direct assay 16586 // RSC complex // inferred from physical interaction --- 497.679809570313 344.630279541016 327.868316650391 506.815460205078 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR052W /GEN=RSC6 /DB_XREF=GI:6319900 /SEG=NC_001135:+214989,216440 /DEF=a subunit of RSC, a fifteen-protein chromatin remodeling complex and related to the swi/snf complex. /NOTE=Rsc6p; go_component: nucleosome remodeling complex [goid GO:0005679] [evidence IPI] [pmid 10025404]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 10025404]; go_process: chromatin remodeling [goid GO:0006338] [evidence ISS] [pmid 8980231] --- --- --- --- --- --- S0000648 // RSC6 SGDID:S0000648, Chr III from 214989-216440, Verified ORF // sgd // 11 // --- /// GENSCAN00000022495 // cdna:Genscan chromosome:SGD1:III:214989:216440:1 // ensembl // 11 // --- /// GENEFINDER00000023349 // cdna:GeneFinder chromosome:SGD1:III:214989:216440:1 // ensembl // 11 // --- /// YCR052W // cdna:known chromosome:SGD1:III:214989:216440:1 gene:YCR052W // ensembl // 11 // --- --- No cerevisiae_gene -1.13224754578605 -1.44409774507664 -1.0716158388615 -1.51792589980871 1.01835648233882 Max fold change below threshold 4 1.51792589980871 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779613_at YLL060C.S1 Glutathione S-transferase capable of homodimerization; functional overlap with Gtt2p, Grx1p, and Grx2p 1.51764909742099 487.359802246094 478.718658447266 GTT2 6749 // glutathione metabolism // inferred from direct assay 5739 // mitochondrion // inferred from direct assay 4364 // glutathione transferase activity // inferred from direct assay /// 4364 // glutathione transferase activity // inferred from sequence similarity 448.039978027344 501.993713378906 472.725891113281 509.397338867188 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL060C /GEN=GTT2 /DB_XREF=GI:6322968 /SEG=NC_001144:-21138,21839 /DEF=Glutathione S-transferase capable of homodimerization; functional overlap with Gtt2p, Grx1p, and Grx2p /NOTE=Gtt2p; go_component: cell [goid GO:0005623] [evidence TAS] [pmid 11169096]; go_function: glutathione transferase activity [goid GO:0004364] [evidence IDA,ISS] [pmid 9792709]; go_process: glutathione metabolism [goid GO:0006749] [evidence IDA] [pmid 9792709] --- --- --- --- --- --- S0003983 // GTT2 SGDID:S0003983, Chr XII from 21839-21138, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017650 // cdna:Genscan chromosome:SGD1:XII:21138:21785:-1 // ensembl // 11 // --- /// GENEFINDER00000024548 // cdna:GeneFinder chromosome:SGD1:XII:21138:21797:-1 // ensembl // 11 // --- /// YLL060C // cdna:known chromosome:SGD1:XII:21138:21839:-1 gene:YLL060C // ensembl // 11 // --- --- No cerevisiae_gene -1.46458884768095 1.12042169894998 1.51764909742099 1.05509756784345 1.1369461741115 Max fold change below threshold 4 1.51764909742099 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770319_at YFR030W.S1 Subunit alpha of assimilatory sulfite reductase, which is responsible for the conversion of sulfite into sulfide 1.51750625836363 929.936676025391 1358.14996337891 MET10 103 // sulfate assimilation // traceable author statement 5737 // cytoplasm // traceable author statement /// 9337 // sulfite reductase complex (NADPH) // inferred from direct assay /// 9337 // sulfite reductase complex (NADPH) // inferred from sequence similarity 4783 // sulfite reductase (NADPH) activity // inferred from sequence similarity 1306.21203613281 860.76220703125 999.111145019531 1410.087890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR030W /GEN=MET10 /DB_XREF=GI:14318553 /SEG=NC_001138:+213300,216407 /DEF=Subunit alpha of assimilatory sulfite reductase, which is responsible for the conversion of sulfite into sulfide /NOTE=Met10p; go_component: sulfite reductase complex (NADPH) [goid GO:0009337] [evidence IDA,ISS] [pmid 7928966]; go_function: sulfite reductase (NADPH) activity [goid GO:0004783] [evidence ISS] [pmid 7928966]; go_process: sulfate assimilation [goid GO:0000103] [evidence TAS] [pmid 7928966] --- --- --- --- scop // a.2.4.Theta subunit of DNA polymerase III // All alpha proteins; Long alpha-hairpin; Theta subunit of DNA polymerase III; Theta subunit of DNA polymerase III // 1.5 /// scop // a.2.4.Theta subunit of DNA polymerase III // All alpha proteins; Long alpha-hairpin; Theta subunit of DNA polymerase III; Theta subunit of DNA polymerase III // 0.879999995231628 --- S0001926 // MET10 SGDID:S0001926, Chr VI from 213300-216407, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018551 // cdna:GeneFinder chromosome:SGD1:VI:213300:216407:1 // ensembl // 11 // --- /// GENSCAN00000023271 // cdna:Genscan chromosome:SGD1:VI:213300:216407:1 // ensembl // 11 // --- /// YFR030W // cdna:known chromosome:SGD1:VI:213300:216407:1 gene:YFR030W // ensembl // 11 // --- --- No cerevisiae_gene -1.13839845721078 -1.51750625836363 1.1552600072763 -1.30737410211481 1.07952449649731 Max fold change below threshold 4 1.51750625836363 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775849_at YHR076W.S1 Mitochondrially localized type 2C protein phosphatase; expression induced by growth on ethanol and by sustained osmotic stress; possible role in carbon source utilization in low oxygen environments 1.51747835745307 490.146270751953 579.62174987793 PTC7 --- 5739 // mitochondrion // inferred from direct assay 15071 // protein phosphatase type 2C activity // inferred from direct assay 509.152801513672 375.028137207031 605.264404296875 650.090698242188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR076W /GEN=PTC7 /DB_XREF=GI:6321867 /SEG=NC_001140:+251102,252226 /DEF=Ptc7p /NOTE=go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11327310]; go_function: protein phosphatase type 2C activity [goid GO:0015071] [evidence IDA] [pmid 12220683]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001118 // span:17-39 // numtm:1 S0001118 // PTC7 SGDID:S0001118, Chr VIII from 251102-252226, Verified ORF // sgd // 11 // --- /// GENSCAN00000016620 // cdna:Genscan chromosome:SGD1:VIII:251102:252226:1 // ensembl // 11 // --- /// GENEFINDER00000020279 // cdna:GeneFinder chromosome:SGD1:VIII:251102:252226:1 // ensembl // 11 // --- /// YHR076W // cdna:known chromosome:SGD1:VIII:251102:252226:1 gene:YHR076W // ensembl // 11 // --- --- No cerevisiae_gene -1.02420710889374 -1.35763893692221 1.51747835745307 1.18876769900405 1.27680864429994 Max fold change below threshold 4 1.51747835745307 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773683_at YMR261C.S1 Regulatory subunit of trehalose-6-phosphate synthase/phosphatase complex, which synthesizes the storage carbohydrate trehalose; expression is induced by stress conditions and repressed by the Ras-cAMP pathway 1.51709732694631 3252.00915527344 4154.64306640625 TPS3 5992 // trehalose biosynthesis // inferred from mutant phenotype /// 5992 // trehalose biosynthesis // inferred from physical interaction /// 5992 // trehalose biosynthesis // inferred from genetic interaction /// 6950 // response to stress // inferred from mutant phenotype 5946 // alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) // inferred from mutant phenotype /// 5946 // alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) // inferred from genetic interaction /// 5946 // alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) // inferred from physical interaction 3825 // alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity // inferred from mutant phenotype /// 3825 // alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity // inferred from sequence similarity /// 4805 // trehalose-phosphatase activity // inferred from genetic interaction /// 30234 // enzyme regulator activity // inferred from mutant phenotype /// 30234 // enzyme regulator activity // inferred from sequence similarity 4419.244140625 3591.05810546875 2912.96020507813 3890.0419921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR261C /GEN=TPS3 /DB_XREF=GI:6323917 /SEG=NC_001145:-790204,793368 /DEF=115 kD regulatory subunit of trehalose-6-phosphate synthase/phosphatase complex /NOTE=Tps3p; go_component: alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) [goid GO:0005946] [evidence IGI,IMP,IPI] [pmid 9837904]; go_function: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity [goid GO:0003825] [evidence IMP,ISS] [pmid 9837904]; go_process: response to stress [goid GO:0006950] [evidence IMP] [pmid 9837904]; go_process: trehalose biosynthesis [goid GO:0005992] [evidence IGI,IMP,IPI] [pmid 9837904] --- --- --- --- --- --- S0004874 // TPS3 SGDID:S0004874, Chr XIII from 793368-790204, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018933 // cdna:Genscan chromosome:SGD1:XIII:790204:793368:-1 // ensembl // 11 // --- /// GENEFINDER00000021875 // cdna:GeneFinder chromosome:SGD1:XIII:790204:793368:-1 // ensembl // 11 // --- /// YMR261C // cdna:known chromosome:SGD1:XIII:790204:793368:-1 gene:YMR261C // ensembl // 11 // --- --- No cerevisiae_gene -1.31780496203741 -1.23062451534689 -1.07985243173781 -1.51709732694631 -1.13604021486151 Max fold change below threshold 4 1.51709732694631 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778510_at YGL166W.S1 Copper-binding transcription factor; activates transcription of the metallothionein genes CUP1-1 and CUP1-2 in response to elevated copper concentrations 1.51692396214202 2664.84887695313 1841.99908447266 CUP2 6367 // transcription initiation from RNA polymerase II promoter // inferred from sequence similarity /// 6367 // transcription initiation from RNA polymerase II promoter // inferred from mutant phenotype /// 46688 // response to copper ion // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 3706 // ligand-regulated transcription factor activity // inferred from sequence similarity /// 3706 // ligand-regulated transcription factor activity // inferred from mutant phenotype 1863.53833007813 2826.84594726563 2502.85180664063 1820.45983886719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL166W /GEN=CUP2 /DB_XREF=GI:6321272 /SEG=NC_001139:+191133,191810 /DEF=Copper-binding transcription factor; activates transcription of the metallothionein genes CUP1-1 and CUP1-2 in response to elevated copper concentrations /NOTE=Cup2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 2651899]; go_function: ligand-regulated transcription factor activity [goid GO:0003706] [evidence IMP,ISS] [pmid 2674688]; go_process: response to copper ion [goid GO:0046688] [evidence IMP] [pmid 3043194]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence IMP,ISS] [pmid 2674688] --- --- --- --- --- --- S0003134 // CUP2 SGDID:S0003134, Chr VII from 191135-191812, Verified ORF // sgd // 11 // --- /// GENSCAN00000019224 // cdna:Genscan chromosome:SGD1:VII:191135:191812:1 // ensembl // 11 // --- /// GENEFINDER00000021518 // cdna:GeneFinder chromosome:SGD1:VII:191135:191812:1 // ensembl // 11 // --- /// YGL166W // cdna:known chromosome:SGD1:VII:191135:191812:1 gene:YGL166W // ensembl // 11 // --- YGL165C // ensembl // 10 // Negative Strand Matching Probes No cerevisiae_gene -1.26366649634134 1.51692396214202 -1.15293171219139 1.34306430205581 -1.02366352187025 Max fold change below threshold 4 1.51692396214202 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772033_at YOR128C.S1 Phosphoribosylaminoimidazole carboxylase, catalyzes a step in the 'de novo' purine nucleotide biosynthetic pathway; red pigment accumulates in mutant cells deprived of adenine 1.51643645421189 3043.47277832031 2124.66479492188 ADE2 6144 // purine base metabolism // inferred from mutant phenotype /// 6144 // purine base metabolism // traceable author statement /// 6164 // purine nucleotide biosynthesis // traceable author statement /// 6189 // 'de novo' IMP biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 4638 // phosphoribosylaminoimidazole carboxylase activity // traceable author statement 2096.36376953125 2907.94311523438 3179.00244140625 2152.9658203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR128C /GEN=ADE2 /DB_XREF=GI:6324702 /SEG=NC_001147:-564476,566191 /DEF=Phosphoribosylaminoimidazole carboxylase, catalyzes a step in the 'de novo' purine nucleotide biosynthetic pathway; red pigment accumulates in mutant cells deprived of adenine /NOTE=Ade2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: phosphoribosylaminoimidazole carboxylase activity [goid GO:0004638] [evidence TAS]; go_process: purine base metabolism [goid GO:0006144] [evidence IMP,TAS] [pmid 8939809]; go_process: purine nucleotide biosynthesis [goid GO:0006164] [evidence TAS] --- --- --- --- --- --- S0005654 // ADE2 SGDID:S0005654, Chr XV from 566191-564476, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017556 // cdna:Genscan chromosome:SGD1:XV:564476:566191:-1 // ensembl // 11 // --- /// GENEFINDER00000022722 // cdna:GeneFinder chromosome:SGD1:XV:564476:566191:-1 // ensembl // 11 // --- /// YOR128C // cdna:known chromosome:SGD1:XV:564476:566191:-1 gene:YOR128C // ensembl // 11 // --- --- No cerevisiae_gene 1.3744532536691 1.38713669712227 1.4121416291649 1.51643645421189 1.02700010923863 Max fold change below threshold 4 1.51643645421189 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773107_at YPL234C.S1 Vacuolar ATPase V0 domain subunit c', involved in proton transport activity; hydrophobic integral membrane protein (proteolipid) containing four transmembrane segments; N and C termini are in the vacuolar lumen 1.51633294675 2592.22399902344 3558.01049804688 TFP3 7035 // vacuolar acidification // traceable author statement 220 // hydrogen-transporting ATPase V0 domain // traceable author statement /// 16021 // integral to membrane // inferred from direct assay 46961 // hydrogen-transporting ATPase activity, rotational mechanism // traceable author statement 3874.83447265625 2555.39819335938 2629.0498046875 3241.1865234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL234C /GEN=TFP3 /DB_XREF=GI:6325022 /SEG=NC_001148:-104946,105440 /DEF=vacuolar ATPase V0 domain subunit c' (17 kDa) /NOTE=Tfp3p; go_component: hydrogen-transporting ATPase V0 domain [goid GO:0000220] [evidence TAS] [pmid 9442887]; go_function: hydrogen-transporting ATPase activity, rotational mechanism [goid GO:0046961] [evidence TAS] [pmid 9442887]; go_process: vacuolar acidification [goid GO:0007035] [evidence TAS] [pmid 9442887] --- --- --- --- --- S0006155 // span:15-37,60-82,92-114,135-157 // numtm:4 S0006155 // TFP3 SGDID:S0006155, Chr XVI from 105440-104946, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020914 // cdna:GeneFinder chromosome:SGD1:XVI:104946:105440:-1 // ensembl // 11 // --- /// YPL234C // cdna:known chromosome:SGD1:XVI:104946:105440:-1 gene:YPL234C // ensembl // 11 // --- --- No cerevisiae_gene -1.11119915637114 -1.51633294675 -1.17039640760265 -1.47385358228953 -1.19549876091263 Max fold change below threshold 4 1.51633294675 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776248_at YLR090W.S1 Putative chaperone, homolog of E. coli DnaJ, closely related to Ydj1p 1.51623374040336 705.771240234375 843.22802734375 XDJ1 --- 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 30188 // chaperone regulator activity // inferred from sequence similarity 802.626159667969 613.376037597656 798.166442871094 883.829895019531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR090W /GEN=XDJ1 /DB_XREF=GI:6323119 /SEG=NC_001144:+320702,322081 /DEF=Homolog of E. coli DnaJ, closely related to Ydj1p /NOTE=Xdj1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: chaperone regulator activity [goid GO:0030188] [evidence ISS] [pmid 8045410]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.9999999774532E-26 --- S0004080 // XDJ1 SGDID:S0004080, Chr XII from 320702-322081, Verified ORF // sgd // 11 // --- /// GENSCAN00000017889 // cdna:Genscan chromosome:SGD1:XII:320702:322081:1 // ensembl // 11 // --- /// GENEFINDER00000024907 // cdna:GeneFinder chromosome:SGD1:XII:320702:322081:1 // ensembl // 11 // --- /// YLR090W // cdna:known chromosome:SGD1:XII:320702:322081:1 gene:YLR090W // ensembl // 11 // --- --- No cerevisiae_gene -1.51623374040336 -1.30853849917504 1.22314877150029 -1.00558745213697 1.10117255010123 Max fold change below threshold 4 1.51623374040336 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774937_at YLR134W.S1 Minor isoform of pyruvate decarboxylase, key enzyme in alcoholic fermentation, decarboxylates pyruvate to acetaldehyde, regulation is glucose- and ethanol-dependent, repressed by thiamine, involved in amino acid catabolism 1.51613504543536 281.720779418945 340.785430908203 PDC5 6090 // pyruvate metabolism // traceable author statement /// 19655 // ethanol fermentation // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4737 // pyruvate decarboxylase activity // traceable author statement 334.794006347656 240.094268798828 323.347290039063 346.77685546875 0.000732421991415322 0.000244141003349796 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR134W /GEN=PDC5 /DB_XREF=GI:6323163 /SEG=NC_001144:+410724,412415 /DEF=pyruvate decarboxylase /NOTE=Pdc5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: pyruvate decarboxylase activity [goid GO:0004737] [evidence TAS] [pmid 10231381]; go_process: ethanol fermentation [goid GO:0019655] [evidence TAS] [pmid 10231381]; go_process: pyruvate metabolism [goid GO:0006090] [evidence TAS] [pmid 10231381] --- --- --- --- --- --- S0004124 // PDC5 SGDID:S0004124, Chr XII from 410724-412415, Verified ORF // sgd // 11 // --- /// GENSCAN00000017923 // cdna:Genscan chromosome:SGD1:XII:410724:412415:1 // ensembl // 11 // --- /// GENEFINDER00000024724 // cdna:GeneFinder chromosome:SGD1:XII:410724:412415:1 // ensembl // 11 // --- /// YLR134W // cdna:known chromosome:SGD1:XII:410724:412415:1 gene:YLR134W // ensembl // 11 // --- --- No cerevisiae_gene 1.51613504543536 -1.3944273139988 -1.32510703466787 -1.03540068731428 1.03579170741979 Max fold change below threshold 4 1.51613504543536 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770345_at YNR017W.S1 Essential protein of the mitochondrial inner membrane, component of the mitochondrial import system 1.51607697790053 926.258178710938 915.744079589844 MAS6 30150 // mitochondrial matrix protein import // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5744 // mitochondrial inner membrane presequence translocase complex // traceable author statement 8565 // protein transporter activity // traceable author statement 878.222961425781 800.205810546875 1052.310546875 953.265197753906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR017W /GEN=MAS6 /DB_XREF=GI:6324344 /SEG=NC_001146:+662912,663580 /DEF=23 kDa mitochondrial inner membrane protein /NOTE=Mas6p; go_component: mitochondrial inner membrane presequence translocase complex [goid GO:0005744] [evidence TAS] [pmid 10744987]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11914276]; go_function: protein transporter activity [goid GO:0008565] [evidence TAS] [pmid 10744987]; go_process: mitochondrial matrix protein import [goid GO:0030150] [evidence TAS] [pmid 10744987] --- --- --- --- --- --- S0005300 // MAS6 SGDID:S0005300, Chr XIV from 662913-663581, Verified ORF // sgd // 11 // --- /// GENSCAN00000020051 // cdna:Genscan chromosome:SGD1:XIV:662913:663581:1 // ensembl // 11 // --- /// GENEFINDER00000020677 // cdna:GeneFinder chromosome:SGD1:XIV:662913:663581:1 // ensembl // 11 // --- /// YNR017W // cdna:known chromosome:SGD1:XIV:662913:663581:1 gene:YNR017W // ensembl // 11 // --- --- No cerevisiae_gene 1.51607697790053 -1.0974963563756 1.12989473413532 1.19822709391086 1.085447818634 Max fold change below threshold 4 1.51607697790053 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776474_at YPR147C.S1 Hypothetical protein 1.51593132293731 634.285217285156 632.116271972656 --- --- 5737 // cytoplasm // inferred from direct assay --- 609.097900390625 568.159973144531 700.410461425781 655.134643554688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR147C /GEN=ASN1 /DB_XREF=GI:6325405 /SEG=NC_001148:-825639,826553 /DEF=Hypothetical ORF /NOTE=Ypr147cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0006351 // span:153-175 // numtm:1 S0006351 // YPR147C SGDID:S0006351, Chr XVI from 826555-825641, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YPR147C // cdna:known chromosome:SGD1:XVI:825641:826555:-1 gene:YPR147C // ensembl // 11 // --- --- No cerevisiae_gene 1.35959721267483 -1.07205352221403 1.51593132293731 1.14991442422736 1.07558184510986 Max fold change below threshold 4 1.51593132293731 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774837_at YDR246W.S1 One of 10 subunits of the transport protein particle (TRAPP) complex of the cis-Golgi which mediates vesicle docking and fusion; involved in endoplasmic reticulum (ER) to Golgi membrane traffic; human homolog is TRAPPC4 1.51569484197227 708.415344238281 592.215301513672 TRS23 6888 // ER to Golgi transport // inferred from mutant phenotype 30008 // TRAPP complex // inferred from direct assay --- 573.417358398438 547.704956054688 869.125732421875 611.013244628906 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR246W /GEN=TRS23 /DB_XREF=GI:6320452 /SEG=NC_001136:+954280,954939 /DEF=Trapp subunit of 23 kDa /NOTE=Trs23p; go_component: TRAPP [goid GO:0030008] [evidence IDA] [pmid 10727015]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 10727015] --- --- --- --- --- --- S0002654 // TRS23 SGDID:S0002654, Chr IV from 954282-954941, Verified ORF // sgd // 11 // --- /// GENSCAN00000025289 // cdna:Genscan chromosome:SGD1:IV:954282:954941:1 // ensembl // 11 // --- /// YDR246W // cdna:known chromosome:SGD1:IV:954282:954941:1 gene:YDR246W // ensembl // 11 // --- --- No cerevisiae_gene -1.02090177245996 -1.04694571787147 1.32094047070369 1.51569484197227 1.06556461132512 Max fold change below threshold 4 1.51569484197227 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773969_at YHR082C.S1 Nonessential putative serine/threonine protein kinase of unknown cellular role; overproduction causes allele-specific suppression of the prp20-10 mutation 1.51565999367389 3060.87377929688 2007.37799072266 KSP1 6468 // protein amino acid phosphorylation // inferred from direct assay 5634 // nucleus // inferred from direct assay 4674 // protein serine/threonine kinase activity // inferred from direct assay 2033.05615234375 3081.421875 3040.32568359375 1981.69982910156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR082C /GEN=KSP1 /DB_XREF=GI:6321874 /SEG=NC_001140:-268460,271549 /DEF=Serine/threonine kinase similar to casein kinase II and other serine/threonine protein kinases /NOTE=Ksp1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8676864]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence IDA] [pmid 8676864]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 8676864] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 3.0E-40 /// hanks // 2.2.12 // CaMK Group; CaMK II KIN1/SNF1/Nim1; YCL24 // 2.0E-48 --- --- S0001124 // KSP1 SGDID:S0001124, Chr VIII from 271549-268460, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016625 // cdna:Genscan chromosome:SGD1:VIII:268460:271549:-1 // ensembl // 11 // --- /// GENEFINDER00000020232 // cdna:GeneFinder chromosome:SGD1:VIII:268460:271549:-1 // ensembl // 11 // --- /// YHR082C // cdna:known chromosome:SGD1:VIII:268460:271549:-1 gene:YHR082C // ensembl // 11 // --- --- No cerevisiae_gene -1.50897969434791 1.51565999367389 -1.16131881691436 1.49544599645652 -1.02591528872739 Max fold change below threshold 4 1.51565999367389 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769948_at YMR283C.S1 2'-O-ribosyl phosphate transferase, modifies the initiator methionine tRNA at position 64 to distinguish it from elongator methionine tRNA 1.5154765507982 714.291351318359 612.940124511719 RIT1 19988 // charged-tRNA modification // inferred from mutant phenotype /// 19988 // charged-tRNA modification // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay 16763 // transferase activity, transferring pentosyl groups // inferred from genetic interaction /// 16763 // transferase activity, transferring pentosyl groups // inferred from mutant phenotype /// 16763 // transferase activity, transferring pentosyl groups // inferred from direct assay 550.519409179688 629.72265625 798.860046386719 675.36083984375 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR283C /GEN=RIT1 /DB_XREF=GI:6323939 /SEG=NC_001145:-835325,836866 /DEF=Modifies initiator methionine tRNA to distinguish it from elongator methionine tRNA /NOTE=Rit1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: transferase activity, transferring pentosyl groups [goid GO:0016763] [evidence IDA,IGI,IMP] [pmid 7954819]; go_process: charged-tRNA modification [goid GO:0019988] [evidence IGI,IMP] [pmid 7954819] --- --- --- --- --- --- S0004896 // RIT1 SGDID:S0004896, Chr XIII from 836866-835325, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018952 // cdna:Genscan chromosome:SGD1:XIII:835325:836809:-1 // ensembl // 11 // --- /// YMR283C // cdna:known chromosome:SGD1:XIII:835325:836866:-1 gene:YMR283C // ensembl // 11 // --- --- No cerevisiae_gene -1.46233202602808 1.14387003573286 1.5154765507982 1.45110241903565 1.22677026201508 Max fold change below threshold 4 1.5154765507982 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779490_at YML058W.S1 Ribonucleotide reductase inhibitor involved in regulating dNTP production; regulated by Mec1p and Rad53p during DNA damage and S phase 1.51539252162582 4105.66796875 2889.69213867188 SML1 6974 // response to DNA damage stimulus // inferred from mutant phenotype /// 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4857 // enzyme inhibitor activity // traceable author statement 3020.96337890625 4577.9453125 3633.390625 2758.4208984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML058W /GEN=SML1 /DB_XREF=GI:6323582 /SEG=NC_001145:+159383,159697 /DEF=Suppressor of mec lethality. Ribonucleotide reductase inhibitor. /NOTE=Sml1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: enzyme inhibitor activity [goid GO:0004857] [evidence TAS] [pmid 11953437]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence IMP] [pmid 9774971]; go_process: response to DNA damage stimulus [goid GO:0006974] [evidence IMP] [pmid 9774971] --- --- --- --- --- --- S0004523 // SML1 SGDID:S0004523, Chr XIII from 159383-159697, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021891 // cdna:GeneFinder chromosome:SGD1:XIII:159383:159697:1 // ensembl // 11 // --- /// YML058W // cdna:known chromosome:SGD1:XIII:159383:159697:1 gene:YML058W // ensembl // 11 // --- --- No cerevisiae_gene 1.31364538778745 1.51539252162582 -1.37967988493251 1.20272580937922 -1.09517854241079 Max fold change below threshold 4 1.51539252162582 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776061_at YHR190W.S1 Farnesyl-diphosphate farnesyl transferase (squalene synthase), joins two farnesyl pyrophosphate moieties to form squalene in the sterol biosynthesis pathway 1.51536412344268 3117.33459472656 4220.74035644531 ERG9 6696 // ergosterol biosynthesis // traceable author statement 5783 // endoplasmic reticulum // traceable author statement 4310 // farnesyl-diphosphate farnesyltransferase activity // traceable author statement 4592.94287109375 3030.9169921875 3203.75219726563 3848.53784179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR190W /GEN=ERG9 /DB_XREF=GI:6321984 /SEG=NC_001140:+484843,486177 /DEF=Farnesyl-diphosphate farnesyl transferase (squalene synthase), joins two farnesyl pyrophosphate moieties to form squalene in the sterol biosynthesis pathway /NOTE=Erg9p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS]; go_function: farnesyl-diphosphate farnesyltransferase activity [goid GO:0004310] [evidence TAS]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence TAS] --- --- --- --- --- S0001233 // span:424-441 // numtm:1 S0001233 // ERG9 SGDID:S0001233, Chr VIII from 484844-486178, Verified ORF // sgd // 11 // --- /// GENSCAN00000016713 // cdna:Genscan chromosome:SGD1:VIII:484844:486178:1 // ensembl // 11 // --- /// GENEFINDER00000020122 // cdna:GeneFinder chromosome:SGD1:VIII:484844:486178:1 // ensembl // 11 // --- /// YHR190W // cdna:known chromosome:SGD1:VIII:484844:486178:1 gene:YHR190W // ensembl // 11 // --- --- No cerevisiae_gene -1.28103932227539 -1.51536412344268 -1.25174129141375 -1.43361364684004 -1.19342541502705 Max fold change below threshold 4 1.51536412344268 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779924_at YER053C-A.S1 Hypothetical protein 1.51524337279279 4817.30065917969 3590.57580566406 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 3978.50756835938 6028.4072265625 3606.19409179688 3202.64404296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER053C-A /GEN=PIC2 /DB_XREF=GI:9755330 /SEG=NC_001137:-260932,261045 /DEF=Hypothetical ORF /NOTE=Yer053c-ap; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0007523 // span:4-21 // numtm:1 S0007523 // YER053C-A SGDID:S0007523, Chr V from 261045-260932, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YER053C-A // cdna:known chromosome:SGD1:V:260932:261045:-1 gene:YER053C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.18626027415509 1.51524337279279 -1.24333872831735 -1.10324277259769 -1.24225718343379 Max fold change below threshold 4 1.51524337279279 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771735_at YCR024C-A.S1 May regulate plasma membrane H(+)-ATPase; Proteolipid associated with plasma membrane H(+)-ATPase (Pma1p) 1.51517310320252 4079.1689453125 4503.38391113281 PMP1 6812 // cation transport // inferred from genetic interaction 5886 // plasma membrane // inferred from direct assay /// 16020 // membrane // inferred from direct assay 30234 // enzyme regulator activity // inferred from mutant phenotype 5331.6396484375 4639.505859375 3518.83203125 3675.12817382813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR024C-A /GEN=PMP1 /DB_XREF=GI:7839147 /SEG=NC_001135:-162940,163062 /DEF=May regulate plasma membrane H(+)-ATPase /NOTE=Pmp1p; go_component: membrane [goid GO:0016020] [evidence IDA] [pmid 1532582]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 1532582]; go_function: enzyme regulator activity [goid GO:0030234] [evidence IMP] [pmid 8063750]; go_process: cation transport [goid GO:0006812] [evidence IGI] [pmid 8063750] --- --- --- --- --- S0000619 // span:5-27 // numtm:1 S0000619 // PMP1 SGDID:S0000619, Chr III from 163062-162940, reverse complement, Verified ORF // sgd // 11 // --- /// YCR024C-A // cdna:known chromosome:SGD1:III:162940:163062:-1 gene:YCR024C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.46003996952411 -1.14918265221369 -1.40941015595907 -1.51517310320252 -1.45073570124873 Max fold change below threshold 4 1.51517310320252 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772510_at YDL185W.S1 Vacuolar ATPase V1 domain subunit A containing the catalytic nucleotide binding sites; protein precursor undergoes self-catalyzed splicing to yield the extein Tfp1p and the intein Vde (PI-SceI), which is a site-specific endonuclease 1.51517029245964 4904.5048828125 3376.80749511719 TFP1 6314 // intron homing // traceable author statement /// 7035 // vacuolar acidification // traceable author statement /// 19538 // protein metabolism // inferred from direct assay 221 // hydrogen-transporting ATPase V1 domain // traceable author statement /// 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay 4520 // endodeoxyribonuclease activity // traceable author statement /// 46961 // hydrogen-transporting ATPase activity, rotational mechanism // traceable author statement 3543.60791015625 5369.16943359375 4439.84033203125 3210.00708007813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL185W /GEN=TFP1 /DB_XREF=GI:6320016 /SEG=NC_001136:+126788,130003 /DEF=Encodes a protein with three regions (ABC) that is spliced to yield the extein AC & the intein B; AC is a 69K vacuolar (H+)-ATPase & B is a 50K site-specific endonuclease named VDE (PI-SceI) that is homologous to HO /NOTE=Tfp1p; go_component: hydrogen-transporting ATPase V1 domain [goid GO:0000221] [evidence TAS] [pmid 9442887]; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 7775427]; go_function: endodeoxyribonuclease activity [goid GO:0004520] [evidence TAS] [pmid 1534148]; go_function: hydrogen-transporting ATPase activity, rotational mechanism [goid GO:0046961] [evidence TAS] [pmid 9442887]; go_process: intron homing [goid GO:0006314] [evidence TAS] [pmid 1534148]; go_process: protein metabolism [goid GO:0019538] [evidence IDA] [pmid 8508780]; go_process: vacuolar acidification [goid GO:0007035] [evidence TAS] [pmid 9442887] --- --- --- --- --- --- S0002344 // TFP1 SGDID:S0002344, Chr IV from 126788-130003, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023427 // cdna:GeneFinder chromosome:SGD1:IV:126788:130003:1 // ensembl // 11 // --- /// GENSCAN00000024965 // cdna:Genscan chromosome:SGD1:IV:126788:130003:1 // ensembl // 11 // --- /// YDL185W // cdna:known chromosome:SGD1:IV:126788:130003:1 gene:YDL185W // ensembl // 11 // --- --- No cerevisiae_gene 1.16140032069738 1.51517029245964 -1.17107684378456 1.25291523345637 -1.10392526301531 Max fold change below threshold 4 1.51517029245964 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776352_at YBL099W.S1 Alpha subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis 1.51500179190516 7620.83422851563 5558.0078125 ATP1 15986 // ATP synthesis coupled proton transport // inferred from mutant phenotype /// 15986 // ATP synthesis coupled proton transport // inferred from sequence similarity 5754 // proton-transporting ATP synthase, catalytic core (sensu Eukaryota) // inferred from mutant phenotype /// 5754 // proton-transporting ATP synthase, catalytic core (sensu Eukaryota) // inferred from sequence similarity /// 42645 // mitochondrial nucleoid // inferred from direct assay 46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // inferred from mutant phenotype /// 46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // inferred from sequence similarity 6155.6123046875 9325.763671875 5915.90478515625 4960.4033203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL099W /GEN=ATP1 /DB_XREF=GI:6319370 /SEG=NC_001134:+37050,38687 /DEF=Alpha subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis /NOTE=Atp1p; go_component: proton-transporting ATP synthase, catalytic core (sensu Eukarya) [goid GO:0005754] [evidence IMP,ISS] [pmid 2876995]; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism [goid GO:0046933] [evidence IMP,ISS] [pmid 2876995]; go_process: ATP synthesis coupled proton transport [goid GO:0015986] [evidence IMP,ISS] [pmid 2876995] --- --- --- --- scop // a.139.1.Type I dockerin domain // All alpha proteins; Type I dockerin domain; Type I dockerin domain; Type I dockerin domain // 2.29999995231628 /// scop // a.139.1.Type I dockerin domain // All alpha proteins; Type I dockerin domain; Type I dockerin domain; Type I dockerin domain // 1.5 --- S0000195 // ATP1 SGDID:S0000195, Chr II from 37050-38687, Verified ORF // sgd // 11 // --- /// GENSCAN00000021061 // cdna:Genscan chromosome:SGD1:II:37050:38687:1 // ensembl // 11 // --- /// GENEFINDER00000022118 // cdna:GeneFinder chromosome:SGD1:II:37050:38687:1 // ensembl // 11 // --- /// YBL099W // cdna:known chromosome:SGD1:II:37050:38687:1 gene:YBL099W // ensembl // 11 // --- --- No cerevisiae_gene -1.25806972472084 1.51500179190516 -1.12028970593436 -1.04051916456342 -1.24094996055678 Max fold change below threshold 4 1.51500179190516 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775270_at YEL013W.S1 Phosphorylated vacuolar membrane protein that interacts with Atg13p, required for the cytoplasm-to-vacuole targeting (Cvt) pathway; interacts with Nvj1p to form nucleus-vacuole junctions 1.51485751591126 1076.830078125 869.718505859375 VAC8 11 // vacuole inheritance // inferred from mutant phenotype /// 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 16237 // microautophagy // inferred from mutant phenotype /// 42145 // homotypic vacuole fusion, non-autophagic // inferred from mutant phenotype /// 42145 // homotypic vacuole fusion, non-autophagic // inferred from direct assay 324 // vacuole (sensu Fungi) // inferred from direct assay 5515 // protein binding // inferred from physical interaction 814.961730957031 930.947387695313 1222.71276855469 924.475280761719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL013W /GEN=VAC8 /DB_XREF=GI:6320824 /SEG=NC_001137:+128825,130561 /DEF=Phosphorylated vacuolar membrane protein that interacts with Atg13p, required for the cytoplasm-to-vacuole targeting (Cvt) pathway; interacts with Nvj1p to form nucleus-vacuole junctions /NOTE=Vac8p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 9739084]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 10888680]; go_process: homotypic vacuole fusion, non-autophagic [goid GO:0042145] [evidence IDA,IMP] [pmid 11441010]; go_process: microautophagy [goid GO:0016237] [evidence IMP] [pmid 12529432]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 9490720]; go_process: vacuole inheritance [goid GO:0000011] [evidence IMP] [pmid 9664035] --- --- --- --- --- --- S0000739 // VAC8 SGDID:S0000739, Chr V from 128825-130561, Verified ORF // sgd // 11 // --- /// AF005267 // Saccharomyces cerevisiae Yeb3p (YEB3) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000016793 // cdna:Genscan chromosome:SGD1:V:128825:130561:1 // ensembl // 11 // --- /// GENEFINDER00000019588 // cdna:GeneFinder chromosome:SGD1:V:128825:130561:1 // ensembl // 11 // --- /// YEL013W // cdna:known chromosome:SGD1:V:128825:130561:1 gene:YEL013W // ensembl // 11 // --- --- No cerevisiae_gene 1.16148556211113 1.14232037202787 1.51485751591126 1.50033151509927 1.13437876362131 Max fold change below threshold 4 1.51485751591126 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777320_at YPL254W.S1 Adaptor protein required for structural integrity of the SAGA complex, a histone acetyltransferase-coactivator complex that is involved in global regulation of gene expression through acetylation and transcription functions 1.51439843935623 101.830677032471 170.325233459473 HFI1 6366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 16568 // chromatin modification // traceable author statement /// 16573 // histone acetylation // traceable author statement 124 // SAGA complex // inferred from direct assay /// 46695 // SLIK (SAGA-like) complex // inferred from physical interaction 3712 // transcription cofactor activity // inferred from mutant phenotype /// 3712 // transcription cofactor activity // inferred from physical interaction 147.829467773438 97.615966796875 106.045387268066 192.820999145508 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL254W /GEN=HFI1 /DB_XREF=GI:6325001 /SEG=NC_001148:+69485,70951 /DEF=Adaptor protein required for structural integrity of the SAGA complex, a histone acetyltransferase-coactivator complex that is involved in global regulation of gene expression through acetylation and transcription functions /NOTE=Hfi1p; go_component: SAGA complex [goid GO:0000124] [evidence IDA] [pmid 9674426]; go_function: transcription cofactor activity [goid GO:0003712] [evidence IMP,IPI] [pmid 9154821]; go_process: chromatin modification [goid GO:0016568] [evidence TAS] [pmid 10839822]; go_process: histone acetylation [goid GO:0016573] [evidence TAS] [pmid 10839822]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IMP] [pmid 9154821] --- --- --- --- --- --- S0006175 // HFI1 SGDID:S0006175, Chr XVI from 69485-70951, Verified ORF // sgd // 10 // --- /// GENSCAN00000016991 // cdna:Genscan chromosome:SGD1:XVI:69485:70951:1 // ensembl // 10 // --- /// GENEFINDER00000020744 // cdna:GeneFinder chromosome:SGD1:XVI:69485:70951:1 // ensembl // 10 // --- /// YPL254W // cdna:known chromosome:SGD1:XVI:69485:70951:1 gene:YPL254W // ensembl // 10 // --- --- No cerevisiae_gene 1.09604473587945 -1.51439843935623 1.06949725809422 -1.39402072623628 1.30434751643038 Max fold change below threshold 4 1.51439843935623 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778835_at YJL087C.S1 tRNA ligase, required for tRNA splicing; composed of three essential domains containing the phosphodiesterase, polynucleotide kinase, and ligase activities required for ligation; localized at the inner membrane of the nuclear envelope 1.51425586575424 77.5027236938477 126.87915802002 TRL1 6388 // tRNA splicing // inferred from direct assay /// 6388 // tRNA splicing // inferred from mutant phenotype /// 30969 // UFP-specific transcription factor mRNA processing during unfolded protein response // traceable author statement 5637 // nuclear inner membrane // inferred from direct assay /// 5654 // nucleoplasm // inferred from direct assay 3972 // RNA ligase (ATP) activity // inferred from direct assay 116.335983276367 78.1782836914063 76.8271636962891 137.422332763672 0.0107421996071935 0.018554700538516 0.018554700538516 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL087C /GEN=TRL1 /DB_XREF=GI:6322374 /SEG=NC_001142:-269918,272401 /DEF=tRNA ligase /NOTE=Trl1p; go_component: nuclear inner membrane [goid GO:0005637] [evidence IDA] [pmid 3312232]; go_component: nucleoplasm [goid GO:0005654] [evidence IDA] [pmid 3312232]; go_function: RNA ligase (ATP) activity [goid GO:0003972] [evidence IDA] [pmid 3512545]; go_process: tRNA splicing [goid GO:0006388] [evidence IMP] [pmid 1537841]; go_process: tRNA splicing [goid GO:0006388] [evidence IDA] [pmid 2207062]; go_process: unfolded protein response, ligation of mRNA encoding UFP-specific transcription factor by RNA ligase [goid GO:0006989] [evidence TAS] [pmid 10346810] --- --- --- --- scop // a.3.1.Two-domain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; Two-domain cytochrome c // 5.5 --- S0003623 // TRL1 SGDID:S0003623, Chr X from 272401-269918, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000024071 // cdna:Genscan chromosome:SGD1:X:269918:272401:-1 // ensembl // 10 // --- /// GENEFINDER00000024268 // cdna:GeneFinder chromosome:SGD1:X:269918:272401:-1 // ensembl // 10 // --- /// YJL087C // cdna:known chromosome:SGD1:X:269918:272401:-1 gene:YJL087C // ensembl // 10 // --- --- No cerevisiae_gene -1.03555957327181 -1.48808566501129 1.47325193020378 -1.51425586575424 1.18125388975492 Max fold change below threshold 4 1.51425586575424 Max fold change below threshold PPPPPP No 3 0 PPPP 0 4 0 No No 3 < x
1770487_at YLR218C.S1 Hypothetical protein 1.51376178003835 206.953170776367 182.219161987305 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 160.103424072266 176.803527832031 237.102813720703 204.334899902344 0.00195312988944352 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR218C /GEN=CPR6 /DB_XREF=GI:6323247 /SEG=NC_001144:-573468,573920 /DEF=Hypothetical ORF /NOTE=Ylr218cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004208 // YLR218C SGDID:S0004208, Chr XII from 573920-573468, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000024717 // cdna:GeneFinder chromosome:SGD1:XII:573468:573920:-1 // ensembl // 11 // --- /// YLR218C // cdna:known chromosome:SGD1:XII:573468:573920:-1 gene:YLR218C // ensembl // 11 // --- GENSCAN00000017988 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.28562596953828 1.10430822361568 1.51376178003835 1.4809353085021 1.27626814408487 Max fold change below threshold 4 1.51376178003835 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771315_at YPL096C-A.S1 Endoplasmic reticulum membrane protein that binds to and inhibits GTP-bound Ras2p at the ER; component of the GPI-GnT complex which catalyzes the first step in GPI-anchor biosynthesis 1.51354115060529 289.94938659668 416.737731933594 ERI1 6506 // GPI anchor biosynthesis // inferred from mutant phenotype /// 7264 // small GTPase mediated signal transduction // inferred from mutant phenotype 506 // glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex // inferred from physical interaction /// 5789 // endoplasmic reticulum membrane // inferred from direct assay 5095 // GTPase inhibitor activity // inferred from mutant phenotype 359.508148193359 237.52783203125 342.370941162109 473.967315673828 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL096C-A /GEN=ERI1 /DB_XREF=GI:23270400 /SEG=NC_001148:-366524,366730 /DEF=Endoplasmic reticulum membrane protein that binds to and inhibits GTP-bound Ras2p at the ER; component of the GPI-GnT complex which catalyzes the first step in GPI-anchor biosynthesis /NOTE=Eri1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 12832483]; go_function: GTPase inhibitor activity [goid GO:0005095] [evidence IMP] [pmid 12832483]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence IMP] [pmid 12832483] --- --- --- --- --- S0028423 // span:7-29,34-56 // numtm:2 S0028423 // ERI1 SGDID:S0028423, Chr XVI from 366732-366526, reverse complement, Verified ORF // sgd // 11 // --- /// YPL096C-A // cdna:known chromosome:SGD1:XVI:366526:366732:-1 gene:YPL096C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.42590258042133 -1.51354115060529 1.40415027957967 -1.05005450221062 1.31837711622299 Max fold change below threshold 4 1.51354115060529 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780213_at YNL158W.S1 Essential protein required for maturation of Gas1p and Pho8p; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery 1.51351216409896 504.249252319336 678.889190673828 --- --- 5635 // nuclear membrane // inferred from direct assay --- 638.319274902344 421.747039794922 586.75146484375 719.459106445313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL158W /GEN=ASI2 /DB_XREF=GI:6324171 /SEG=NC_001146:+339612,340208 /DEF=Essential protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery /NOTE=Ynl158wp; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005102 // span:7-29,162-184 // numtm:2 S0005102 // YNL158W SGDID:S0005102, Chr XIV from 339612-340208, Uncharacterized ORF // sgd // 11 // --- /// YNL158W // cdna:known chromosome:SGD1:XIV:339612:340208:1 gene:YNL158W // ensembl // 11 // --- --- No cerevisiae_gene 1.4130998162881 -1.51351216409896 1.12384465314997 -1.08788697284689 1.12711480717135 Max fold change below threshold 4 1.51351216409896 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778532_at YLR109W.S1 Thiol-specific peroxiredoxin, reduces hydroperoxides to protect against oxidative damage; function in vivo requires covalent conjugation to Urm1p 1.51277024636736 6850.56005859375 6778.90087890625 AHP1 10038 // response to metal ion // inferred from mutant phenotype /// 30503 // regulation of cell redox homeostasis // inferred from mutant phenotype /// 30503 // regulation of cell redox homeostasis // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 8379 // thioredoxin peroxidase activity // inferred from mutant phenotype /// 8379 // thioredoxin peroxidase activity // inferred from direct assay /// 8379 // thioredoxin peroxidase activity // inferred from sequence similarity 8093.08740234375 8351.2744140625 5349.845703125 5464.71435546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR109W /GEN=AHP1 /DB_XREF=GI:6323138 /SEG=NC_001144:+368782,369312 /DEF=Thiol-specific peroxiredoxin, reduces hydroperoxides to protect against oxidative damage; function in vivo requires covalent conjugation to Urm1p /NOTE=Ahp1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10681558]; go_function: thioredoxin peroxidase activity [goid GO:0008379] [evidence IDA,IMP,ISS] [pmid 10681558]; go_process: regulation of cell redox homeostasis [goid GO:0030503] [evidence IDA,IMP] [pmid 10681558]; go_process: response to metal ion [goid GO:0010038] [evidence IMP] [pmid 12270680] --- --- --- --- --- --- S0004099 // AHP1 SGDID:S0004099, Chr XII from 368782-369312, Verified ORF // sgd // 11 // --- /// GENSCAN00000017905 // cdna:Genscan chromosome:SGD1:XII:368782:369312:1 // ensembl // 11 // --- /// GENEFINDER00000024854 // cdna:GeneFinder chromosome:SGD1:XII:368782:369312:1 // ensembl // 11 // --- /// YLR109W // cdna:known chromosome:SGD1:XII:368782:369312:1 gene:YLR109W // ensembl // 11 // --- --- No cerevisiae_gene -1.47911419007495 1.03190216525327 -1.31965241636946 -1.51277024636736 -1.48097171707515 Max fold change below threshold 4 1.51277024636736 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776191_at YLR281C.S1 Hypothetical protein 1.51248300372203 132.41316986084 122.910331726074 --- --- 5739 // mitochondrion // inferred from direct assay --- 116.575744628906 88.5075073242188 176.318832397461 129.244918823242 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR281C /GEN=YSH1 /DB_XREF=GI:6323311 /SEG=NC_001144:-704495,704962 /DEF=Hypothetical ORF /NOTE=Ylr281cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004271 // YLR281C SGDID:S0004271, Chr XII from 704962-704495, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENEFINDER00000024825 // cdna:GeneFinder chromosome:SGD1:XII:699916:704959:-1 // ensembl // 10 // --- /// GENSCAN00000018038 // cdna:Genscan chromosome:SGD1:XII:704495:704959:-1 // ensembl // 10 // --- /// YLR281C // cdna:known chromosome:SGD1:XII:704495:704962:-1 gene:YLR281C // ensembl // 10 // --- YLR280C // ensembl // 7 // Cross Hyb Matching Probes /// YLR279W // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene -1.25938054050659 -1.31712832225484 -1.18532895718266 1.51248300372203 1.10867761758388 Max fold change below threshold 4 1.51248300372203 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769688_at YDR210W.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery 1.51239032151518 677.88330078125 495.9716796875 --- --- --- --- 492.098571777344 665.0634765625 690.703125 499.844787597656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR210W /GEN=MSS4 /DB_XREF=GI:6320415 /SEG=NC_001136:+871067,871294 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery /NOTE=Ydr210wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002618 // YDR210W SGDID:S0002618, Chr IV from 871069-871296, Uncharacterized ORF // sgd // 11 // --- /// YDR210W // cdna:known chromosome:SGD1:IV:871069:871296:1 gene:YDR210W // ensembl // 11 // --- GENEFINDER00000023610 // ensembl // 11 // Negative Strand Matching Probes /// YDR209C // ensembl // 11 // Negative Strand Matching Probes No cerevisiae_gene 1.51239032151518 1.35148426495214 -1.15362323402687 1.40358693280768 1.01574118736483 Max fold change below threshold 4 1.51239032151518 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776766_at YDL039C.S1 Hypothetical protein /// Pheromone-regulated protein, predicted to have one transmembrane segment; promoter contains Gcn4p binding elements 1.51212316358519 847.602416992188 636.315216064453 PRM7 747 // conjugation with cellular fusion // inferred from expression pattern 16021 // integral to membrane // inferred from sequence similarity --- 588.568725585938 805.216430664063 889.988403320313 684.061706542969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL039C /GEN=PRM7 /DB_XREF=GI:6320165 /SEG=NC_001136:-381983,382330 /DEF=Pheromone-regulated protein, predicted to have one transmembrane segment; promoter contains Gcn4p binding elements /NOTE=Prm7p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 11062271]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IEP] [pmid 11062271] --- --- --- --- --- --- S0002197 // PRM7 SGDID:S0002197, Chr IV from 382330-381983, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023896 // cdna:GeneFinder chromosome:SGD1:IV:381983:382273:-1 // ensembl // 9 // --- /// YDL039C // cdna:known chromosome:SGD1:IV:381983:382330:-1 gene:YDL039C // ensembl // 11 // --- --- No cerevisiae_gene 1.15848662931357 1.36809245150164 1.03587763698641 1.51212316358519 1.16224610110224 Max fold change below threshold 4 1.51212316358519 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771493_at YIL115C.S1 Subunit of the nuclear pore complex that is found exclusively on the cytoplasmic side, forms a subcomplex with Nup82p and Nsp1p, required for mRNA export 1.51192205921574 1928.15051269531 1889.49530029297 NUP159 54 // ribosome-nucleus export // inferred from mutant phenotype /// 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 6407 // rRNA-nucleus export // inferred from mutant phenotype /// 6999 // nuclear pore organization and biogenesis // inferred from mutant phenotype 5643 // nuclear pore // traceable author statement 5198 // structural molecule activity // traceable author statement 1847.67321777344 1885.26501464844 1971.03601074219 1931.3173828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL115C /GEN=NUP159 /DB_XREF=GI:6322076 /SEG=NC_001141:-144324,148706 /DEF=Subunit of the nuclear pore complex that is found exclusively on the cytoplasmic side, forms a subcomplex with Nup82p and Nsp1p, required for mRNA export /NOTE=Nup159p; go_component: nuclear pore [goid GO:0005643] [evidence TAS] [pmid 11343909]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 11343909]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 9359887]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence IMP] [pmid 9359887]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence IMP] [pmid 11739405]; go_process: ribosome-nucleus export [goid GO:0000054] [evidence IMP] [pmid 11739405] --- --- --- --- scop // a.4.5.Arginine repressor (ArgR), N-terminal DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Arginine repressor (ArgR), N-terminal DNA-binding domain // 0.730000019073486 --- S0001377 // NUP159 SGDID:S0001377, Chr IX from 148706-144324, reverse complement, Verified ORF // sgd // 9 // --- /// GENSCAN00000016390 // cdna:Genscan chromosome:SGD1:IX:144324:148706:-1 // ensembl // 9 // --- /// GENEFINDER00000019022 // cdna:GeneFinder chromosome:SGD1:IX:144324:148706:-1 // ensembl // 9 // --- /// YIL115C // cdna:known chromosome:SGD1:IX:144324:148706:-1 gene:YIL115C // ensembl // 9 // --- YIL115W-A // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene -1.51192205921574 1.02034547912119 -1.04445676705647 1.06676656444553 1.04526999917218 Max fold change below threshold 4 1.51192205921574 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777539_at YDR201W.S1 Component of Dam1p complex, important for spindle and kinetochore integrity; localized to nuclear side of spindle pole body and along mitotic spindle 1.51187012218394 337.891143798828 477.799591064453 SPC19 7020 // microtubule nucleation // inferred from physical interaction /// 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from physical interaction /// 31110 // regulation of microtubule polymerization or depolymerization // inferred from physical interaction /// 31110 // regulation of microtubule polymerization or depolymerization // inferred from direct assay 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 5816 // spindle pole body // inferred from direct assay /// 5819 // spindle // inferred from direct assay /// 5876 // spindle microtubule // inferred from direct assay /// 42729 // DASH complex // inferred from direct assay /// 42729 // DASH complex // inferred from physical interaction 5200 // structural constituent of cytoskeleton // inferred from physical interaction 420.819091796875 278.343414306641 397.438873291016 534.780090332031 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR201W /GEN=SPC19 /DB_XREF=GI:6320407 /SEG=NC_001136:+856310,856807 /DEF=Spindle Pole Component of molecular weight 23kDa /NOTE=Spc19p; go_component: DASH complex [goid GO:0042729] [evidence IDA,IPI] [pmid 11799062]; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IDA] [pmid 11756468]; go_component: spindle [goid GO:0005819] [evidence IDA] [pmid 11756468]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 9585415]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9585415]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752]; go_process: mitotic spindle assembly (sensu Fungi) [goid GO:0030472] [evidence IPI] [pmid 11756468] --- --- --- --- --- --- S0002609 // SPC19 SGDID:S0002609, Chr IV from 856312-856809, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023723 // cdna:GeneFinder chromosome:SGD1:IV:856312:856809:1 // ensembl // 11 // --- /// GENSCAN00000025250 // cdna:Genscan chromosome:SGD1:IV:856312:856809:1 // ensembl // 11 // --- /// YDR201W // cdna:known chromosome:SGD1:IV:856312:856809:1 gene:YDR201W // ensembl // 11 // --- --- No cerevisiae_gene -1.20552351371454 -1.51187012218394 1.17088009630586 -1.05882720608646 1.27080757683438 Max fold change below threshold 4 1.51187012218394 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779972_at YPR149W.S1 Protein of unknown function; contains transmembrane domains; involved in secretion of proteins that lack classical secretory signal sequences; component of the detergent-insoluble glycolipid-enriched complexes (DIGs) 1.51173809953352 7627.6640625 6662.16455078125 NCE102 9306 // protein secretion // inferred from genetic interaction /// 9306 // protein secretion // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity --- 8019.5048828125 9857.7158203125 5397.6123046875 5304.82421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR149W /GEN=NCE102 /DB_XREF=GI:6325407 /SEG=NC_001148:+829912,830433 /DEF=involved in secretion of proteins that lack classical secretory signal sequences /NOTE=Nce102p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11914276]; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 8655575]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein secretion [goid GO:0009306] [evidence IGI,IMP] [pmid 8655575] --- --- --- --- --- AAB05589.1 // span:10-28,40-62,72-94,124-146 // numtm:4 /// S0006353 // span:10-28,40-62,72-94,124-146 // numtm:4 S0006353 // NCE102 SGDID:S0006353, Chr XVI from 829914-830435, Verified ORF // sgd // 11 // --- /// U41659 // Saccharomyces cerevisiae non-classical export (NCE2) mRNA, complete cds. // gb // 11 // --- /// YPR149W // cdna:known chromosome:SGD1:XVI:829914:830435:1 gene:YPR149W // ensembl // 11 // --- --- No cerevisiae_gene -1.47218736352821 1.22921750960457 -1.32373429380147 -1.48575044484911 -1.51173809953352 Max fold change below threshold 4 1.51173809953352 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779438_at YJL105W.S1 Protein of unknown function, contains a SET domain 1.51067301371134 54.06321144104 45.4800796508789 SET4 --- --- --- 38.7561378479004 53.0068778991699 55.1195449829102 52.2040214538574 0.00122069998178631 0.00195312988944352 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL105W /GEN=SET4 /DB_XREF=GI:6322356 /SEG=NC_001142:+224972,226654 /DEF=Set4p /NOTE=go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003641 // SET4 SGDID:S0003641, Chr X from 224972-226654, Verified ORF // sgd // 11 // --- /// GENSCAN00000024057 // cdna:Genscan chromosome:SGD1:X:224972:226654:1 // ensembl // 11 // --- /// GENEFINDER00000024385 // cdna:GeneFinder chromosome:SGD1:X:224972:226654:1 // ensembl // 11 // --- /// YJL105W // cdna:known chromosome:SGD1:X:224972:226654:1 gene:YJL105W // ensembl // 11 // --- --- No cerevisiae_gene 1.30314481083033 1.36770279090236 1.51067301371134 1.42221459731691 1.34698719616319 Max fold change below threshold 4 1.51067301371134 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771167_at YGL091C.S1 Essential nuclear protein, evolutionarily conserved putative ATPase; exhibits genetic interaction with CDC2 encoding the catalytic subunit of DNA polymerase delta 1.51051576721265 502.258209228516 448.431091308594 NBP35 --- 5634 // nucleus // inferred from direct assay 16887 // ATPase activity // inferred from sequence similarity /// 16887 // ATPase activity // inferred from mutant phenotype 436.089477539063 345.79638671875 658.720031738281 460.772705078125 0.00122069998178631 0.0239257998764515 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL091C /GEN=NBP35 /DB_XREF=GI:6321347 /SEG=NC_001139:-342057,343043 /DEF=NBP35 encodes an essential evolutionary conserved protein with homology to bacterial partitioning ATPases /NOTE=Nbp35p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8921898]; go_function: ATPase activity [goid GO:0016887] [evidence IMP,ISS] [pmid 8921898]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003059 // NBP35 SGDID:S0003059, Chr VII from 343045-342059, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019284 // cdna:Genscan chromosome:SGD1:VII:342059:343045:-1 // ensembl // 11 // --- /// GENEFINDER00000021674 // cdna:GeneFinder chromosome:SGD1:VII:342059:343045:-1 // ensembl // 11 // --- /// YGL091C // cdna:known chromosome:SGD1:VII:342059:343045:-1 gene:YGL091C // ensembl // 11 // --- --- No cerevisiae_gene -1.2432145237532 -1.26111635137978 1.30037187416461 1.51051576721265 1.0566012912725 Max fold change below threshold 4 1.51051576721265 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1769919_at YPL131W.S1 Protein component of the large (60S) ribosomal subunit with similarity to E. coli L18 and rat L5 ribosomal proteins; binds 5S rRNA and is required for 60S subunit assembly 1.51051481274267 4974.68408203125 5524.29150390625 RPL5 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3723 // RNA binding // inferred from direct assay /// 3735 // structural constituent of ribosome // traceable author statement 6355.4755859375 5592.2802734375 4357.087890625 4693.107421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL131W /GEN=RPL5 /DB_XREF=GI:6325126 /SEG=NC_001148:+303120,304013 /DEF=Protein component of the large (60S) ribosomal subunit with similarity to E. coli L18 and rat L5 ribosomal proteins; binds 5S rRNA and is required for 60S subunit assembly /NOTE=Rpl5p; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 8474444]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 8474444] --- --- --- --- --- --- S0006052 // RPL5 SGDID:S0006052, Chr XVI from 303120-304013, Verified ORF // sgd // 11 // --- /// GENSCAN00000017089 // cdna:Genscan chromosome:SGD1:XVI:303120:304013:1 // ensembl // 11 // --- /// GENEFINDER00000020920 // cdna:GeneFinder chromosome:SGD1:XVI:303120:304013:1 // ensembl // 11 // --- /// YPL131W // cdna:known chromosome:SGD1:XVI:303120:304013:1 gene:YPL131W // ensembl // 11 // --- --- No cerevisiae_gene -1.11729575574856 -1.13647300835852 -1.51051481274267 -1.45865214232019 -1.35421481219758 Max fold change below threshold 4 1.51051481274267 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779691_at YER021W.S1 Essential, non-ATPase regulatory subunit of the 26S proteasome lid, similar to the p58 subunit of the human 26S proteasome; temperature-sensitive alleles cause metaphase arrest, suggesting a role for the proteasome in cell cycle control 1.51021022758617 1817.53887939453 1361.23083496094 RPN3 6511 // ubiquitin-dependent protein catabolism // traceable author statement 8541 // proteasome regulatory particle, lid subcomplex (sensu Eukaryota) // inferred from physical interaction --- 1267.91882324219 1720.25378417969 1914.82397460938 1454.54284667969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER021W /GEN=RPN3 /DB_XREF=GI:6320859 /SEG=NC_001137:+196947,198518 /DEF=proteasome subunit /NOTE=Rpn3p; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence TAS] [pmid 9697412]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 9697412]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 9697412] --- --- --- --- --- --- S0000823 // RPN3 SGDID:S0000823, Chr V from 196947-198518, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019769 // cdna:GeneFinder chromosome:SGD1:V:196947:198518:1 // ensembl // 11 // --- /// GENSCAN00000016823 // cdna:Genscan chromosome:SGD1:V:196965:198518:1 // ensembl // 11 // --- /// YER021W // cdna:known chromosome:SGD1:V:196947:198518:1 gene:YER021W // ensembl // 11 // --- --- No cerevisiae_gene -1.10730192201291 1.35675388096285 1.07433585599248 1.51021022758617 1.14718925219541 Max fold change below threshold 4 1.51021022758617 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772516_at YDR096W.S1 Transcriptional factor, involved in the expression of genes during nutrient limitation; also involved in the negative regulation of DPP1 and PHR1 1.50965256735125 2467.05346679688 1805.61779785156 GIS1 6644 // phospholipid metabolism // inferred from mutant phenotype /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 3700 // transcription factor activity // inferred from mutant phenotype /// 3700 // transcription factor activity // inferred from sequence similarity 1821.58239746094 2749.95654296875 2184.150390625 1789.65319824219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR096W /GEN=GIS1 /DB_XREF=GI:6320301 /SEG=NC_001136:+637133,639817 /DEF=putative zinc finger protein; repressor of PHR1 transcription /NOTE=Gis1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: transcription factor activity [goid GO:0003700] [evidence IMP,ISS] [pmid 10628841]; go_process: intracellular signaling cascade [goid GO:0007242] [evidence IGI] [pmid 10628841] --- --- --- --- --- --- S0002503 // GIS1 SGDID:S0002503, Chr IV from 637134-639818, Verified ORF // sgd // 11 // --- /// GENSCAN00000025166 // cdna:Genscan chromosome:SGD1:IV:637134:639818:1 // ensembl // 11 // --- /// YDR096W // cdna:known chromosome:SGD1:IV:637134:639818:1 gene:YDR096W // ensembl // 11 // --- --- No cerevisiae_gene 1.02920943764888 1.50965256735125 -1.18297942946131 1.19904012778639 -1.01784099804929 Max fold change below threshold 4 1.50965256735125 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772560_at YJR068W.S1 Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon 1.50930611614835 745.268157958984 492.608856201172 RFC2 75 // cell cycle checkpoint // inferred from mutant phenotype /// 6272 // leading strand elongation // inferred from direct assay /// 6298 // mismatch repair // traceable author statement /// 7062 // sister chromatid cohesion // inferred from physical interaction 5663 // DNA replication factor C complex // inferred from direct assay 3689 // DNA clamp loader activity // inferred from direct assay /// 17076 // purine nucleotide binding // inferred from sequence similarity 522.711120605469 701.605224609375 788.931091308594 462.506591796875 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR068W /GEN=RFC2 /DB_XREF=GI:6322528 /SEG=NC_001142:+567557,568618 /DEF=RFC is a DNA binding protein and ATPase that acts as a processivity factor for DNA polymerases delta and epsilon and loads proliferating cell nuclear antigen (PCNA) on DNA /NOTE=Rfc2p; go_component: DNA replication factor C complex [goid GO:0005663] [evidence IDA] [pmid 8202350]; go_function: DNA clamp loader activity [goid GO:0003689] [evidence IDA] [pmid 12604797]; go_function: purine nucleotide binding [goid GO:0017076] [evidence ISS] [pmid 7651383]; go_process: cell cycle checkpoint [goid GO:0000075] [evidence IMP] [pmid 9671499]; go_process: leading strand elongation [goid GO:0006272] [evidence IDA] [pmid 1346062]; go_process: mismatch repair [goid GO:0006298] [evidence TAS] [pmid 10072354]; go_process: sister chromatid cohesion [goid GO:0007062] [evidence IPI] [pmid 11389843] --- --- --- --- scop // a.4.5.N-terminal domain of molybdate-dependent transcriptional r // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; N-terminal domain of molybdate-dependent transcriptional regulator ModE // 4.80000019073486 --- S0003829 // RFC2 SGDID:S0003829, Chr X from 567557-568618, Verified ORF // sgd // 11 // --- /// GENSCAN00000024187 // cdna:Genscan chromosome:SGD1:X:567557:568618:1 // ensembl // 11 // --- /// GENEFINDER00000024420 // cdna:GeneFinder chromosome:SGD1:X:567557:568618:1 // ensembl // 11 // --- /// YJR068W // cdna:known chromosome:SGD1:X:567557:568618:1 gene:YJR068W // ensembl // 11 // --- --- No cerevisiae_gene -1.10260244772596 1.3422427741669 1.11051939030597 1.50930611614835 -1.13017009892701 Max fold change below threshold 4 1.50930611614835 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779212_at YJL004C.S1 Integral membrane protein of the Golgi required for targeting of the Arf-like GTPase Arl3p to the Golgi; multicopy suppressor of ypt6 null mutation 1.50893492006488 561.036849975586 595.572631835938 SYS1 6895 // Golgi to endosome transport // inferred from genetic interaction /// 16050 // vesicle organization and biogenesis // inferred from physical interaction 5802 // Golgi trans face // inferred from direct assay /// 30173 // integral to Golgi membrane // inferred from direct assay --- 620.487365722656 411.208831787109 710.864868164063 570.657897949219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL004C /GEN=SYS1 /DB_XREF=GI:6322456 /SEG=NC_001142:-431504,432115 /DEF=Multicopy suppressor of ypt6 null mutation /NOTE=Sys1p; go_component: integral to Golgi membrane [goid GO:0030173] [evidence IDA] [pmid 11726510]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi to endosome transport [goid GO:0006895] [evidence IGI] [pmid 8923208]; go_process: vesicle organization and biogenesis [goid GO:0016050] [evidence IPI] [pmid 11726510] --- --- --- --- --- S0003541 // span:30-52,79-101,106-125,132-154 // numtm:4 S0003541 // SYS1 SGDID:S0003541, Chr X from 432115-431504, reverse complement, Verified ORF // sgd // 11 // --- /// YJL004C // cdna:known chromosome:SGD1:X:431504:432115:-1 gene:YJL004C // ensembl // 11 // --- GENEFINDER00000024533 // ensembl // 3 // Cross Hyb Matching Probes No cerevisiae_gene 1.28674644515848 -1.50893492006488 1.39479011790698 1.14565566913058 -1.08731933432011 Max fold change below threshold 4 1.50893492006488 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771981_at YGL110C.S1 Protein of unknown function; has a CUE domain that binds ubiquitin, which may facilitate intramolecular monoubiquitination 1.50893271801266 185.397842407227 228.515312194824 CUE3 --- 5737 // cytoplasm // inferred from direct assay --- 224.981048583984 149.099456787109 221.696228027344 232.049575805664 0.000732421991415322 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL110C /GEN=CUE3 /DB_XREF=GI:6321328 /SEG=NC_001139:-301538,303412 /DEF=Protein of unknown function; has a CUE domain that binds ubiquitin, which may facilitate intramolecular monoubiquitination /NOTE=Cue3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003078 // CUE3 SGDID:S0003078, Chr VII from 303414-301540, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019269 // cdna:Genscan chromosome:SGD1:VII:301540:303414:-1 // ensembl // 11 // --- /// GENEFINDER00000021600 // cdna:GeneFinder chromosome:SGD1:VII:301540:302598:-1 // ensembl // 11 // --- /// YGL110C // cdna:known chromosome:SGD1:VII:301540:303414:-1 gene:YGL110C // ensembl // 11 // --- --- No cerevisiae_gene -1.22195558203172 -1.50893271801266 1.09817789285909 -1.01481676339678 1.0314183228595 Max fold change below threshold 4 1.50893271801266 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771705_at YER150W.S1 GPI-anchored, serine/threonine rich cell wall protein of unknown function; basal expression requires Msn2p/Msn4p; expression is induced under conditions of stress and during the diauxic shift; similar to Sed1p 1.50890485221143 9495.3125 7474.58740234375 SPI1 --- 9277 // cell wall (sensu Fungi) // inferred from sequence similarity /// 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 8824.4248046875 12531.296875 6459.328125 6124.75 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER150W /GEN=SPI1 /DB_XREF=GI:6320998 /SEG=NC_001137:+468365,468811 /DEF=strongly expressed during stationary phase, and trancription is dependent on MSN2/MSN4. /NOTE=Spi1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA,ISS] [pmid 9613572]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000952 // SPI1 SGDID:S0000952, Chr V from 468365-468811, Verified ORF // sgd // 11 // --- /// GENSCAN00000016929 // cdna:Genscan chromosome:SGD1:V:468401:468811:1 // ensembl // 10 // --- /// GENEFINDER00000019607 // cdna:GeneFinder chromosome:SGD1:V:468401:468811:1 // ensembl // 10 // --- /// YER150W // cdna:known chromosome:SGD1:V:468365:468811:1 gene:YER150W // ensembl // 11 // --- --- No cerevisiae_gene -1.50890485221143 1.42006954020883 -1.23019851735678 -1.36615211890749 -1.44078122448875 Max fold change below threshold 4 1.50890485221143 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769324_at YJL147C.S1 Hypothetical protein 1.50886627583845 173.75887298584 269.297218322754 --- --- 5739 // mitochondrion // inferred from direct assay --- 251.657211303711 180.732116699219 166.785629272461 286.937225341797 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL147C /GEN=RPA34 /DB_XREF=GI:6322314 /SEG=NC_001142:-141337,142485 /DEF=Hypothetical ORF /NOTE=Yjl147cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003683 // YJL147C SGDID:S0003683, Chr X from 142485-141337, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024026 // cdna:Genscan chromosome:SGD1:X:141337:142485:-1 // ensembl // 11 // --- /// YJL147C // cdna:known chromosome:SGD1:X:141337:142485:-1 gene:YJL147C // ensembl // 11 // --- --- No cerevisiae_gene -1.18177006905562 -1.39243215815664 1.40756752404274 -1.50886627583845 1.14019075334785 Max fold change below threshold 4 1.50886627583845 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769418_at YER114C.S1 Protein implicated in polar growth, functionally redundant with Boi1p; interacts with bud-emergence protein Bem1p; contains an SH3 (src homology 3) domain and a PH (pleckstrin homology) domain 1.50861868495269 833.828155517578 739.146759033203 BOI2 7266 // Rho protein signal transduction // inferred from physical interaction /// 7266 // Rho protein signal transduction // inferred from genetic interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from genetic interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction 5933 // bud // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 30427 // site of polarized growth // inferred from direct assay 5543 // phospholipid binding // inferred from sequence similarity 711.281372070313 594.603942871094 1073.05236816406 767.012145996094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER114C /GEN=BOI2 /DB_XREF=GI:6320960 /SEG=NC_001137:-390586,393708 /DEF=Protein implicated in polar growth, functionally redundant with Boi1p; interacts with bud-emergence protein Bem1p; contains an SH3 (src homology 3) domain and a PH (pleckstrin homology) domain /NOTE=Boi2p; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 12097146]; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 12097146]; go_component: site of polarized growth (sensu Saccharomyces) [goid GO:0000134] [evidence IDA] [pmid 12097146]; go_function: phospholipid binding [goid GO:0005543] [evidence ISS] [pmid 12097146]; go_process: Rho protein signal transduction [goid GO:0007266] [evidence IGI,IPI] [pmid 10639324]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IGI,IMP,IPI] [pmid 10639324] --- --- --- --- --- --- S0000916 // BOI2 SGDID:S0000916, Chr V from 393708-390586, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016896 // cdna:Genscan chromosome:SGD1:V:390586:393708:-1 // ensembl // 11 // --- /// GENEFINDER00000019626 // cdna:GeneFinder chromosome:SGD1:V:390586:393708:-1 // ensembl // 11 // --- /// YER114C // cdna:known chromosome:SGD1:V:390586:393708:-1 gene:YER114C // ensembl // 11 // --- --- No cerevisiae_gene 1.20228883110625 -1.19622713673211 1.09225294015583 1.50861868495269 1.07835264090154 Max fold change below threshold 4 1.50861868495269 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776925_at YBL059C-A.S1 Hypothetical protein 1.50823083925621 379.055999755859 313.574661254883 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 298.22607421875 343.738220214844 414.373779296875 328.923248291016 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL059C-A /GEN=SKT5 /DB_XREF=GI:6681845 /SEG=NC_001134:-110089,110503 /DEF=Hypothetical ORF /NOTE=Ybl059c-ap; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007488 // YBL059C-A SGDID:S0007488, Chr II from 110541-110508,110422-110127, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YBL059C-A // cdna:known chromosome:SGD1:II:110127:110541:-1 gene:YBL059C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.01386146435547 1.15260954668474 1.50823083925621 1.38946193884083 1.10293256266301 Max fold change below threshold 4 1.50823083925621 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771523_at YDL160C-A.S1 Identified by homology to Ashbya gossypii 1.50822191377806 79.4199867248535 84.9688987731934 --- --- --- --- 79.0423583984375 84.738883972168 74.1010894775391 90.8954391479492 0.00122069998178631 0.00585938012227416 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL160C-A /GEN=ENT1 /DB_XREF=GI:33438778 /SEG=NC_001136:-169367,169609 /DEF=Identified by homology to Ashbya gossypii /NOTE=Ydl160c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028520 // YDL160C-A SGDID:S0028520, Chr IV from 169609-169367, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDL160C-A // cdna:known chromosome:SGD1:IV:169367:169609:-1 gene:YDL160C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.39357852713837 1.07206927638742 1.50822191377806 -1.06668281068116 1.14995859169286 Max fold change below threshold 4 1.50822191377806 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sc-TDH1-M_at AFFX-r2-Sc-TDH1-M Glyceraldehyde-3-phosphate dehydrogenase, isozyme 1, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall 1.50819330835212 3940.40808105469 2727.49035644531 TDH1 6094 // gluconeogenesis // inferred from expression pattern /// 6096 // glycolysis // inferred from expression pattern 5737 // cytoplasm // inferred from direct assay /// 5811 // lipid particle // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay 4365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // inferred from direct assay 2969.22290039063 4478.162109375 3402.65405273438 2485.7578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=TDH1 SGD:YJL052W Glyceraldehyde-3-phosphate dehydrogenase 1 (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- S0003588 // TDH1 SGDID:S0003588, Chr X from 338187-339185, Verified ORF // sgd // 11 // --- /// GENSCAN00000024101 // cdna:Genscan chromosome:SGD1:X:338187:339185:1 // ensembl // 11 // --- /// GENEFINDER00000024436 // cdna:GeneFinder chromosome:SGD1:X:338187:339185:1 // ensembl // 11 // --- /// YJL052W // cdna:known chromosome:SGD1:X:338187:339185:1 gene:YJL052W // ensembl // 11 // --- --- AFFX_control cerevisiae_gene -1.14687940531703 1.50819330835212 -1.19307723208965 1.14597460914326 -1.1944940434098 Max fold change below threshold 4 1.50819330835212 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771736_at YDL095W.S1 Protein O-mannosyltransferase, transfers mannose residues from dolichyl phosphate-D-mannose to protein serine/threonine residues; acts in a complex with Pmt2p, can instead interact with Pmt3p in some conditions; target for new antifungals 1.50813653661404 1068.01177978516 919.108337402344 PMT1 6493 // O-linked glycosylation // inferred from mutant phenotype /// 6493 // O-linked glycosylation // inferred from direct assay 5789 // endoplasmic reticulum membrane // traceable author statement 4169 // dolichyl-phosphate-mannose-protein mannosyltransferase activity // inferred from direct assay /// 4169 // dolichyl-phosphate-mannose-protein mannosyltransferase activity // inferred from mutant phenotype 866.134216308594 859.48974609375 1276.53381347656 972.082458496094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL095W /GEN=PMT1 /DB_XREF=GI:6320107 /SEG=NC_001136:+287059,289512 /DEF=Transfers mannose residues from dolichyl phosphate-D-mannose to specific serine/threonine residues of proteins in the secretory pathway; acts in complex with Pmt2p /NOTE=Pmt1p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence TAS] [pmid 8367478]; go_function: dolichyl-phosphate-mannose-protein mannosyltransferase activity [goid GO:0004169] [evidence IDA,IMP] [pmid 8367478]; go_process: O-linked glycosylation [goid GO:0006493] [evidence IDA,IMP] [pmid 8367478] --- --- --- --- scop // a.4.1.Centromere-binding // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding // 8.89999961853027 S0002253 // span:51-70,139-161,181-203,235-254,274-296,589-611,623-642,657-679,686-708 // numtm:9 S0002253 // PMT1 SGDID:S0002253, Chr IV from 287059-289512, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023575 // cdna:GeneFinder chromosome:SGD1:IV:287059:289512:1 // ensembl // 11 // --- /// GENSCAN00000025029 // cdna:Genscan chromosome:SGD1:IV:287059:289512:1 // ensembl // 11 // --- /// YDL095W // cdna:known chromosome:SGD1:IV:287059:289512:1 gene:YDL095W // ensembl // 11 // --- --- No cerevisiae_gene 1.50813653661404 -1.00773071493295 -1.4674092947601 1.47382910112599 1.12232312289779 Max fold change below threshold 4 1.50813653661404 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sc-SPT15-M_at AFFX-r2-Sc-SPT15-M TATA-binding protein, general transcription factor that interacts with other factors to form the preinitiation complex at promoters, essential for viability 1.50772590713385 2083.05505371094 1427.61273193359 SPT15 6360 // transcription from RNA polymerase I promoter // traceable author statement /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 6384 // transcription initiation from RNA polymerase III promoter // traceable author statement 120 // RNA polymerase I transcription factor complex // traceable author statement /// 126 // transcription factor TFIIIB complex // traceable author statement /// 5634 // nucleus // inferred from direct assay /// 5669 // transcription factor TFIID complex // traceable author statement /// 5669 // transcription factor TFIID complex // inferred from direct assay 3677 // DNA binding // inferred from physical interaction /// 3677 // DNA binding // traceable author statement /// 3701 // RNA polymerase I transcription factor activity // traceable author statement /// 3709 // RNA polymerase III transcription factor activity // traceable author statement /// 16251 // general RNA polymerase II transcription factor activity // traceable author statement 1553.51586914063 2088.14184570313 2077.96826171875 1301.70959472656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=SPT15 SGD:YER148W TATA-binding protein tfIId general transcription factor (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- S0000950 // SPT15 SGDID:S0000950, Chr V from 465298-466020, Verified ORF // sgd // 11 // --- /// GENSCAN00000016927 // cdna:Genscan chromosome:SGD1:V:465298:466020:1 // ensembl // 11 // --- /// GENEFINDER00000019595 // cdna:GeneFinder chromosome:SGD1:V:465298:466020:1 // ensembl // 11 // --- /// YER148W // cdna:known chromosome:SGD1:V:465298:466020:1 gene:YER148W // ensembl // 11 // --- YER147C-A // ensembl // 3 // Negative Strand Matching Probes AFFX_control cerevisiae_gene 1.50772590713385 1.34413937262079 -1.03407572468128 1.33759062459287 -1.19344274286229 Max fold change below threshold 4 1.50772590713385 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779331_at YOR198C.S1 Component of mRNP complexes associated with polyribosomes; implicated in secretion and nuclear segregation; multicopy suppressor of BFA (Brefeldin A) sensitivity 1.50763075398189 1735.48101806641 2356.28466796875 BFR1 7088 // regulation of mitosis // inferred from mutant phenotype /// 7126 // meiosis // inferred from mutant phenotype /// 16071 // mRNA metabolism // inferred from physical interaction 5844 // polysome // inferred from direct assay /// 30529 // ribonucleoprotein complex // inferred from direct assay /// 42175 // nuclear envelope-endoplasmic reticulum network // inferred from direct assay 3723 // RNA binding // inferred from direct assay 2384.06811523438 1581.33422851563 1889.62780761719 2328.50122070313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR198C /GEN=BFR1 /DB_XREF=GI:6324772 /SEG=NC_001147:-718653,720065 /DEF=Multicopy suppressor of BFA (Brefeldin A)-induced lethality; implicated in secretion and nuclear segregation /NOTE=Bfr1p; go_component: nuclear envelope-endoplasmic reticulum network [goid GO:0042175] [evidence IDA] [pmid 11410665]; go_component: polysome [goid GO:0005844] [evidence IDA] [pmid 11410665]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 11410665]; go_process: bud growth [goid GO:0007117] [evidence IMP] [pmid 8913743]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 8913743]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 8913743]; go_process: regulation of mitosis [goid GO:0007088] [evidence IMP] [pmid 8913743]; go_process: spindle assembly [goid GO:0007051] [evidence IMP] [pmid 8913743] --- --- --- --- --- --- S0005724 // BFR1 SGDID:S0005724, Chr XV from 720065-718653, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017617 // cdna:Genscan chromosome:SGD1:XV:718623:720065:-1 // ensembl // 11 // --- /// GENEFINDER00000022582 // cdna:GeneFinder chromosome:SGD1:XV:718623:720065:-1 // ensembl // 11 // --- /// YOR198C // cdna:known chromosome:SGD1:XV:718653:720065:-1 gene:YOR198C // ensembl // 11 // --- --- No cerevisiae_gene -1.16508325838651 -1.50763075398189 -1.14992452884402 -1.26166015636734 -1.02386380304944 Max fold change below threshold 4 1.50763075398189 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771109_at YHL028W.S1 ER membrane protein involved in the translocation of soluble secretory proteins and insertion of membrane proteins into the ER membrane; exhibits functional overlap with WSC family members involved in the stress response 1.50746857636627 42.8525218963623 53.8591003417969 WSC4 6616 // SRP-dependent cotranslational protein-membrane targeting, translocation // inferred from sequence similarity /// 6950 // response to stress // inferred from genetic interaction /// 9408 // response to heat // inferred from sequence similarity /// 9408 // response to heat // inferred from genetic interaction /// 45047 // protein-ER targeting // inferred from mutant phenotype 5624 // membrane fraction // inferred from sequence similarity /// 5789 // endoplasmic reticulum membrane // inferred from direct assay 4888 // transmembrane receptor activity // inferred from genetic interaction /// 4888 // transmembrane receptor activity // inferred from sequence similarity 52.6940383911133 50.7497291564941 34.9553146362305 55.0241622924805 0.00585938012227416 0.0239257998764515 0.0676269978284836 0.00415039015933871 P P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL028W /GEN=WSC4 /DB_XREF=GI:6321759 /SEG=NC_001140:+48761,50578 /DEF=cell wall integrity and stress response component 4 /NOTE=Wsc4p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 10196219]; go_component: membrane fraction [goid GO:0005624] [evidence ISS] [pmid 10348843]; go_function: transmembrane receptor activity [goid GO:0004888] [evidence IGI,ISS] [pmid 10430578]; go_process: Rho protein signal transduction [goid GO:0007266] [evidence ISS] [pmid 10348843]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence TAS] [pmid 10508863]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence TAS] [pmid 10348843]; go_process: response to heat [goid GO:0009408] [evidence ISS] [pmid 10348843] --- --- --- --- --- S0001020 // span:413-435 // numtm:1 S0001020 // WSC4 SGDID:S0001020, Chr VIII from 48761-50578, Verified ORF // sgd // 11 // --- /// GENSCAN00000016529 // cdna:Genscan chromosome:SGD1:VIII:49769:50578:1 // ensembl // 11 // --- /// GENEFINDER00000020268 // cdna:GeneFinder chromosome:SGD1:VIII:49811:50578:1 // ensembl // 11 // --- /// YHL028W // cdna:known chromosome:SGD1:VIII:48761:50578:1 gene:YHL028W // ensembl // 11 // --- --- No cerevisiae_gene 1.4881106251266 -1.03831171647485 -1.29789666982745 -1.50746857636627 1.04421987709638 Max fold change below threshold 4 1.50746857636627 Max fold change below threshold PPPPAP No 3 0 PPAP 1 3 0 No No 2 < x = 3
1778947_at YGL105W.S1 Protein that binds tRNA and methionyl- and glutamyl-tRNA synthetases (Mes1p and Gus1p), delivering tRNA to them, stimulating catalysis, and ensuring their localization to the cytoplasm; also binds quadruplex nucleic acids 1.50671249221061 1898.74682617188 1667.74340820313 ARC1 6409 // tRNA-nucleus export // inferred from mutant phenotype /// 6418 // tRNA aminoacylation for protein translation // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 17102 // methionyl glutamyl tRNA synthetase complex // inferred from mutant phenotype /// 17102 // methionyl glutamyl tRNA synthetase complex // inferred from physical interaction 49 // tRNA binding // inferred from mutant phenotype /// 49 // tRNA binding // inferred from physical interaction 1687.60925292969 1678.33569335938 2119.15795898438 1647.87756347656 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL105W /GEN=ARC1 /DB_XREF=GI:6321333 /SEG=NC_001139:+307438,308568 /DEF=Protein that binds tRNA and methionyl- and glutamyl-tRNA synthetases (Mes1p and Ygl245wp), delivering tRNA to them, stimulating catalysis, and ensuring their localization to the cytoplasm; also binds quadruplex nucleic acids /NOTE=Arc1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11726524]; go_component: methionyl glutamyl tRNA synthetase complex [goid GO:0017102] [evidence IMP,IPI] [pmid 9659920]; go_function: tRNA binding [goid GO:0000049] [evidence IMP,IPI] [pmid 11726524]; go_process: tRNA aminoacylation for protein translation [goid GO:0006418] [evidence IMP] [pmid 9659920]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence IMP] [pmid 11726524] --- --- --- --- --- --- S0003073 // ARC1 SGDID:S0003073, Chr VII from 307440-308570, Verified ORF // sgd // 11 // --- /// GENSCAN00000019273 // cdna:Genscan chromosome:SGD1:VII:307440:308570:1 // ensembl // 11 // --- /// GENEFINDER00000021512 // cdna:GeneFinder chromosome:SGD1:VII:307440:308570:1 // ensembl // 11 // --- /// YGL105W // cdna:known chromosome:SGD1:VII:307440:308570:1 gene:YGL105W // ensembl // 11 // --- U24162 // gb // 1 // Cross Hyb Matching Probes No cerevisiae_gene 1.50671249221061 -1.00552544976968 -1.29461007359434 1.25571601086301 -1.02411082615222 Max fold change below threshold 4 1.50671249221061 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779489_at YNL037C.S1 Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase, which catalyzes the oxidation of isocitrate to alpha-ketoglutarate in the TCA cycle 1.50603437438428 3963.3427734375 2672.26672363281 IDH1 6099 // tricarboxylic acid cycle // traceable author statement /// 6102 // isocitrate metabolism // traceable author statement /// 6537 // glutamate biosynthesis // traceable author statement 5759 // mitochondrial matrix // inferred from direct assay /// 42645 // mitochondrial nucleoid // inferred from direct assay 4449 // isocitrate dehydrogenase (NAD+) activity // traceable author statement 2683.88330078125 4042.0205078125 3884.6650390625 2660.65014648438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL037C /GEN=IDH1 /DB_XREF=GI:6324291 /SEG=NC_001146:-557918,559000 /DEF=Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase, which catalyzes the oxidation of isocitrate to alpha-ketoglutarate in the TCA cycle /NOTE=Idh1p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 8626605]; go_function: isocitrate dehydrogenase (NAD+) activity [goid GO:0004449] [evidence TAS] [pmid 9175438]; go_process: glutamate biosynthesis [goid GO:0006537] [evidence TAS] [pmid 9175438]; go_process: isocitrate metabolism [goid GO:0006102] [evidence TAS] [pmid 9175438]; go_process: tricarboxylic acid cycle [goid GO:0006099] [evidence TAS] [pmid 9175438] --- --- --- --- --- --- S0004982 // IDH1 SGDID:S0004982, Chr XIV from 559001-557919, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020005 // cdna:Genscan chromosome:SGD1:XIV:557919:559001:-1 // ensembl // 11 // --- /// GENEFINDER00000020482 // cdna:GeneFinder chromosome:SGD1:XIV:557919:559001:-1 // ensembl // 11 // --- /// YNL037C // cdna:known chromosome:SGD1:XIV:557919:559001:-1 gene:YNL037C // ensembl // 11 // --- --- No cerevisiae_gene 1.31407273560185 1.50603437438428 -1.17339064452138 1.44740460135942 -1.00873213425958 Max fold change below threshold 4 1.50603437438428 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778383_at YKL196C.S1 v-SNARE (synaptobrevin) essential for endoplasmic reticulum-Golgi transport; has similarity to Sec22p, Snc1p, and Snc2p 1.50574544519956 1974.70721435547 2479.61657714844 YKT6 6891 // intra-Golgi transport // traceable author statement /// 6906 // vesicle fusion // traceable author statement 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5625 // soluble fraction // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 16020 // membrane // inferred from direct assay 5485 // v-SNARE activity // traceable author statement 2597.48974609375 1725.05236816406 2224.36206054688 2361.74340820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL196C /GEN=YKT6 /DB_XREF=GI:6322652 /SEG=NC_001143:-74937,75539 /DEF=Synaptobrevin (v-SNARE) homolog with similarity to Sec22p, Snc1p, and Snc2p, essential for endoplasmic reticulum-Golgi transport /NOTE=Ykt6p; go_component: membrane [goid GO:0016020] [evidence IDA] [pmid 9211930]; go_function: v-SNARE activity [goid GO:0005485] [evidence TAS] [pmid 10047442]; go_process: intra-Golgi transport [goid GO:0006891] [evidence TAS] [pmid 10047442]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 10047442] --- --- --- --- --- --- S0001679 // YKT6 SGDID:S0001679, Chr XI from 75539-74937, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018270 // cdna:Genscan chromosome:SGD1:XI:74937:75539:-1 // ensembl // 11 // --- /// GENEFINDER00000022989 // cdna:GeneFinder chromosome:SGD1:XI:74937:75539:-1 // ensembl // 11 // --- /// YKL196C // cdna:known chromosome:SGD1:XI:74937:75539:-1 gene:YKL196C // ensembl // 11 // --- --- No cerevisiae_gene -1.12410170433829 -1.50574544519956 -1.00374854298541 -1.16774593136836 -1.09981877670191 Max fold change below threshold 4 1.50574544519956 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772613_at YLR253W.S1 Hypothetical protein 1.50553539673069 446.965728759766 643.762359619141 --- --- 5739 // mitochondrion // inferred from direct assay --- 603.90283203125 401.121643066406 492.809814453125 683.621887207031 0.000244141003349796 0.00122069998178631 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR253W /GEN=SSP120 /DB_XREF=GI:6323282 /SEG=NC_001144:+642629,644338 /DEF=Hypothetical ORF /NOTE=Ylr253wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004243 // YLR253W SGDID:S0004243, Chr XII from 642629-644338, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018015 // cdna:Genscan chromosome:SGD1:XII:642632:644338:1 // ensembl // 11 // --- /// GENEFINDER00000024785 // cdna:GeneFinder chromosome:SGD1:XII:642947:644338:1 // ensembl // 11 // --- /// YLR253W // cdna:known chromosome:SGD1:XII:642629:644338:1 gene:YLR253W // ensembl // 11 // --- --- No cerevisiae_gene -1.22286555490786 -1.50553539673069 1.1096365762096 -1.22542777014578 1.13200642710623 Max fold change below threshold 4 1.50553539673069 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775312_at YKL207W.S1 Hypothetical protein 1.50533333816168 1066.35760498047 1476.82153320313 --- --- --- --- 1420.82702636719 943.862060546875 1188.85314941406 1532.81604003906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL207W /GEN=CBT1 /DB_XREF=GI:42759859 /SEG=NC_001143:+48108,48956 /DEF=Hypothetical ORF /NOTE=Ykl207wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001690 // span:39-61,153-175,206-225 // numtm:3 S0001690 // YKL207W SGDID:S0001690, Chr XI from 48108-48956, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022954 // cdna:GeneFinder chromosome:SGD1:XI:48108:48956:1 // ensembl // 11 // --- /// YKL207W // cdna:known chromosome:SGD1:XI:48108:48956:1 gene:YKL207W // ensembl // 11 // --- --- No cerevisiae_gene -1.06035683165124 -1.50533333816168 -1.05032595580631 -1.19512407993153 1.07881959703301 Max fold change below threshold 4 1.50533333816168 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771863_at YFL017C.S1 Evolutionarily conserved glucosamine-6-phosphate acetyltransferase required for multiple cell cycle events including passage through START, DNA synthesis, and mitosis; involved in UDP-N-acetylglucosamine synthesis, forms GlcNAc6P from AcCoA 1.5052203001122 822.344146728516 602.143981933594 GNA1 6048 // UDP-N-acetylglucosamine biosynthesis // inferred from mutant phenotype /// 6048 // UDP-N-acetylglucosamine biosynthesis // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4343 // glucosamine 6-phosphate N-acetyltransferase activity // inferred from direct assay 561.228088378906 844.771911621094 799.916381835938 643.059875488281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL017C /GEN=GNA1 /DB_XREF=GI:14318503 /SEG=NC_001138:-103977,104456 /DEF=involved in UDP-N-acetylglucosamine biosynthesis /NOTE=Gna1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: glucosamine 6-phosphate N-acetyltransferase activity [goid GO:0004343] [evidence IDA] [pmid 9867860]; go_process: UDP-N-acetylglucosamine biosynthesis [goid GO:0006048] [evidence IDA,IMP] [pmid 9867860] --- --- --- --- --- --- S0001877 // GNA1 SGDID:S0001877, Chr VI from 104456-103977, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000023228 // cdna:Genscan chromosome:SGD1:VI:103977:104456:-1 // ensembl // 11 // --- /// YFL017C // cdna:known chromosome:SGD1:VI:103977:104456:-1 gene:YFL017C // ensembl // 11 // --- --- No cerevisiae_gene 1.00984093698849 1.5052203001122 1.1743349572672 1.42529641405953 1.1458084311955 Max fold change below threshold 4 1.5052203001122 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771061_at YNL073W.S1 Mitochondrial lysine-tRNA synthetase, required for import of both aminoacylated and deacylated forms of tRNA(Lys) into mitochondria 1.50501795649586 1026.40103149414 1060.32794189453 MSK1 6430 // lysyl-tRNA aminoacylation // inferred from mutant phenotype /// 6430 // lysyl-tRNA aminoacylation // inferred from sequence similarity 5739 // mitochondrion // inferred from sequence similarity /// 5739 // mitochondrion // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from direct assay 4824 // lysine-tRNA ligase activity // inferred from sequence similarity 1059.0146484375 703.655822753906 1349.14624023438 1061.64123535156 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL073W /GEN=MSK1 /DB_XREF=GI:6324256 /SEG=NC_001146:+488385,490115 /DEF=mitochondrial lysine-tRNA synthetase /NOTE=Msk1p; go_component: mitochondrion [goid GO:0005739] [evidence IMP,ISS] [pmid 2016746]; go_function: lysine-tRNA ligase activity [goid GO:0004824] [evidence ISS] [pmid 2016746]; go_process: lysyl-tRNA aminoacylation [goid GO:0006430] [evidence IMP,ISS] [pmid 2016746] --- --- --- --- --- --- S0005017 // MSK1 SGDID:S0005017, Chr XIV from 488385-490115, Verified ORF // sgd // 11 // --- /// GENSCAN00000019974 // cdna:Genscan chromosome:SGD1:XIV:488385:490115:1 // ensembl // 11 // --- /// GENEFINDER00000020592 // cdna:GeneFinder chromosome:SGD1:XIV:488502:490115:1 // ensembl // 11 // --- /// YNL073W // cdna:known chromosome:SGD1:XIV:488385:490115:1 gene:YNL073W // ensembl // 11 // --- --- No cerevisiae_gene 1.07605808944967 -1.50501795649586 1.06437304448139 1.27396371922234 1.00248021773631 Max fold change below threshold 4 1.50501795649586 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776095_at YMR289W.S1 4-amino-4-deoxychorismate lyase, catalyzes the third step in para-aminobenzoic acid biosynthesis 1.50495378962989 276.763412475586 368.674865722656 --- --- 5737 // cytoplasm // inferred from direct assay --- 353.339111328125 234.784027099609 318.742797851563 384.010620117188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR289W /GEN=HSH155 /DB_XREF=GI:6323945 /SEG=NC_001145:+848684,849808 /DEF=4-amino-4-deoxychorismate lyase, catalyzes the third step in para-aminobenzoic acid biosynthesis /NOTE=Ymr289wp --- --- --- --- --- --- S0004902 // ABZ2 SGDID:S0004902, Chr XIII from 848684-849808, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018957 // cdna:Genscan chromosome:SGD1:XIII:848693:849808:1 // ensembl // 11 // --- /// GENEFINDER00000022094 // cdna:GeneFinder chromosome:SGD1:XIII:848693:849808:1 // ensembl // 11 // --- /// YMR289W // cdna:known chromosome:SGD1:XIII:848684:849808:1 gene:YMR289W // ensembl // 11 // --- --- No cerevisiae_gene -1.3236422002826 -1.50495378962989 1.41467640610609 -1.10853990650064 1.08680473744833 Max fold change below threshold 4 1.50495378962989 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778705_at YNL020C.S1 Serine/threonine protein kinase involved in regulation of the cortical actin cytoskeleton; involved in control of endocytosis 1.50477316836998 295.362884521484 216.847724914551 ARK1 147 // actin cortical patch assembly // traceable author statement /// 910 // cytokinesis // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from sequence similarity /// 6468 // protein amino acid phosphorylation // inferred from mutant phenotype /// 7015 // actin filament organization // inferred from mutant phenotype /// 7015 // actin filament organization // inferred from genetic interaction /// 30100 // regulation of endocytosis // inferred from mutant phenotype 30479 // actin cortical patch // inferred from direct assay 4674 // protein serine/threonine kinase activity // inferred from mutant phenotype /// 4674 // protein serine/threonine kinase activity // inferred from sequence similarity 217.965621948242 292.307434082031 298.418334960938 215.729827880859 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL020C /GEN=ARK1 /DB_XREF=GI:6324308 /SEG=NC_001146:-595621,597537 /DEF=actin regulating kinase /NOTE=Ark1p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10652251]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence IMP,ISS] [pmid 10087264]; go_process: actin cortical patch assembly [goid GO:0000147] [evidence TAS] [pmid 10652251]; go_process: actin filament organization [goid GO:0007015] [evidence IGI,IMP] [pmid 10087264]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IMP,ISS] [pmid 10087264]; go_process: regulation of endocytosis [goid GO:0030100] [evidence IMP] [pmid 12956961] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 3.0E-36 /// hanks // 1.8.7 // AGC group; AGC VIII Flowering plant PVPK1 homologs; PsPK5 // 1.0E-53 --- --- S0004965 // ARK1 SGDID:S0004965, Chr XIV from 597538-595622, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020021 // cdna:Genscan chromosome:SGD1:XIV:595622:597538:-1 // ensembl // 11 // --- /// GENEFINDER00000020431 // cdna:GeneFinder chromosome:SGD1:XIV:595622:596899:-1 // ensembl // 11 // --- /// YNL020C // cdna:known chromosome:SGD1:XIV:595622:597538:-1 gene:YNL020C // ensembl // 11 // --- --- No cerevisiae_gene -1.50477316836998 1.34107127293423 -1.0272381518365 1.36910734956084 -1.01036386154546 Max fold change below threshold 4 1.50477316836998 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772856_at YKL204W.S1 eIF4E-associated protein, binds eIF4E and inhibits cap-dependent translation, also functions independently of eIF4E to maintain genetic stability; plays a role in cell growth, implicated in the TOR signaling cascade 1.50441922571276 1037.11126708984 909.613800048828 EAP1 16478 // negative regulation of translation // inferred from direct assay /// 16478 // negative regulation of translation // inferred from mutant phenotype 5845 // mRNA cap complex // inferred from physical interaction 8190 // eukaryotic initiation factor 4E binding // traceable author statement 871.132568359375 763.673950195313 1310.54858398438 948.095031738281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL204W /GEN=EAP1 /DB_XREF=GI:6322645 /SEG=NC_001143:+53705,55603 /DEF=eIF4E-associated protein, binds eIF4E and inhibits cap-dependent translation, also functions independently of eIF4E to maintain genetic stability; plays a role in cell growth, implicated in the TOR signaling cascade /NOTE=Eap1p; go_component: mRNA cap complex [goid GO:0005845] [evidence IPI] [pmid 10848587]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: negative regulation of translation [goid GO:0016478] [evidence IDA,IMP] [pmid 10848587] --- --- --- --- --- --- S0001687 // EAP1 SGDID:S0001687, Chr XI from 53705-55603, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023134 // cdna:GeneFinder chromosome:SGD1:XI:53705:55603:1 // ensembl // 11 // --- /// GENSCAN00000018266 // cdna:Genscan chromosome:SGD1:XI:53954:55603:1 // ensembl // 11 // --- /// YKL204W // cdna:known chromosome:SGD1:XI:53705:55603:1 gene:YKL204W // ensembl // 11 // --- --- No cerevisiae_gene -1.22517796779742 -1.14071269307612 1.00096821638273 1.50441922571276 1.08834759045211 Max fold change below threshold 4 1.50441922571276 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769518_x_at YIL176C.S1 Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth /// Hypothetical protein /// Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 1.50440665864192 143.340774536133 102.279430389404 PAU4 /// PAU6 /// PAU1 /// PAU2 /// DAN3 --- 9277 // cell wall (sensu Fungi) // inferred from sequence similarity --- 96.5945434570313 141.364074707031 145.317474365234 107.964317321777 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL176C /DB_XREF=GI:6322018 /SEG=NC_001141:-8793,9155 /DEF=Hypothetical ORF /NOTE=Yil176cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001438 // YIL176C SGDID:S0001438, Chr IX from 9155-8793, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0003759 // PAU1 SGDID:S0003759, Chr X from 9138-8776, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016343 // cdna:Genscan chromosome:SGD1:IX:8793:9155:-1 // ensembl // 11 // --- /// GENEFINDER00000019046 // cdna:GeneFinder chromosome:SGD1:IX:8793:9155:-1 // ensembl // 11 // --- /// GENSCAN00000023970 // cdna:Genscan chromosome:SGD1:X:8776:9138:-1 // ensembl // 11 // --- /// GENEFINDER00000024482 // cdna:GeneFinder chromosome:SGD1:X:8776:9138:-1 // ensembl // 11 // --- /// YIL176C // cdna:known chromosome:SGD1:IX:8793:9155:-1 gene:YIL176C // ensembl // 11 // --- /// YJL223C // cdna:known chromosome:SGD1:X:8776:9138:-1 gene:YJL223C // ensembl // 11 // --- S0002142 // sgd // 6 // Cross Hyb Matching Probes /// S0007592 // sgd // 2 // Cross Hyb Matching Probes /// S0002950 // sgd // 2 // Cross Hyb Matching Probes /// S0003230 // sgd // 2 // Cross Hyb Matching Probes /// S0003526 // sgd // 2 // Cross Hyb Matching Probes /// S0001038 // sgd // 2 // Cross Hyb Matching Probes /// S0003987 // sgd // 4 // Cross Hyb Matching Probes /// S0005359 // sgd // 4 // Cross Hyb Matching Probes /// S0005521 // sgd // 4 // Cross Hyb Matching Probes /// GENEFINDER00000018205 // ensembl // 6 // Cross Hyb Matching Probes /// GENSCAN00000020319 // ensembl // 6 // Cross Hyb Matching Probes /// GENEFINDER00000022249 // ensembl // 6 // Cross Hyb Matching Probes /// GENEFINDER00000023792 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000025521 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000019154 // ensembl // 2 // Cross Hyb Matching Probes /// GENEFINDER00000021409 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000019567 // ensembl // 2 // Cross Hyb Matching Probes /// GENEFINDER00000021587 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000016515 // ensembl // 2 // Cross Hyb Matching Probes /// GENEFINDER00000020211 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000017642 // ensembl // 4 // Cross Hyb Matching Probes /// GENEFINDER00000024911 // ensembl // 4 // Cross Hyb Matching Probes /// GENSCAN00000020101 // ensembl // 4 // Cross Hyb Matching Probes /// GENEFINDER00000020637 // ensembl // 4 // Cross Hyb Matching Probes /// GENSCAN00000017342 // ensembl // 4 // Cross Hyb Matching Probes /// GENEFINDER00000022652 // ensembl // 4 // Cross Hyb Matching Probes /// YAL068C // ensembl // 6 // Cross Hyb Matching Probes /// YBL108C-A // ensembl // 2 // Cross Hyb Matching Probes /// YDR542W // ensembl // 2 // Cross Hyb Matching Probes /// YGL261C // ensembl // 2 // Cross Hyb Matching Probes /// YGR294W // ensembl // 2 // Cross Hyb Matching Probes /// YHL046C // ensembl // 2 // Cross Hyb Matching Probes /// YLL064C // ensembl // 4 // Cross Hyb Matching Probes /// YNR076W // ensembl // 4 // Cross Hyb Matching Probes /// YOL161C // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene 1.37454908205143 1.4634788844974 -1.05395061661594 1.50440665864192 1.11770617115452 Max fold change below threshold 4 1.50440665864192 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776080_at YGL245W.S1 Glutamyl-tRNA synthetase (GluRS), forms a complex with methionyl-tRNA synthetase (Mes1p) and Arc1p; complex formation increases the catalytic efficiency of both tRNA synthetases and ensures their correct localization to the cytoplasm 1.50334262192597 4631.09887695313 3931.83020019531 GUS1 6424 // glutamyl-tRNA aminoacylation // inferred from direct assay 5737 // cytoplasm // inferred from direct assay /// 17102 // methionyl glutamyl tRNA synthetase complex // inferred from direct assay 4818 // glutamate-tRNA ligase activity // inferred from direct assay 4070.31005859375 5116.931640625 4145.26611328125 3793.35034179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL245W /GEN=RAI1 /DB_XREF=GI:37362649 /SEG=NC_001139:+39023,41149 /DEF=Glutamyl-tRNA synthetase (GluRS), forms a complex with methionyl-tRNA synthetase (Mes1p) and Arc1p; complex formation increases the catalytic efficiency of both tRNA synthetases and ensures their correct localization to the cytoplasm /NOTE=Ygl245wp --- --- --- --- --- --- S0003214 // GUS1 SGDID:S0003214, Chr VII from 39023-41149, Verified ORF // sgd // 11 // --- /// GENSCAN00000019167 // cdna:Genscan chromosome:SGD1:VII:39023:41149:1 // ensembl // 11 // --- /// GENEFINDER00000021544 // cdna:GeneFinder chromosome:SGD1:VII:39023:41149:1 // ensembl // 11 // --- /// YGL245W // cdna:known chromosome:SGD1:VII:39023:41149:1 gene:YGL245W // ensembl // 11 // --- --- No cerevisiae_gene 1.0216102576837 1.25713559089227 -1.50334262192597 1.01841531814738 -1.07301190025746 Max fold change below threshold 4 1.50334262192597 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770340_at YLL058W.S1 Hypothetical protein 1.50324600698571 535.806854248047 622.894378662109 --- 6790 // sulfur metabolism // inferred from sequence similarity --- 3962 // cystathionine gamma-synthase activity // inferred from sequence similarity 609.946838378906 480.735290527344 590.87841796875 635.841918945313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL058W /GEN=GTT2 /DB_XREF=GI:6322970 /SEG=NC_001144:+23569,25296 /DEF=Hypothetical ORF /NOTE=Yll058wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: cystathionine gamma-synthase activity [goid GO:0003962] [evidence ISS] [pmid 10821189]; go_process: sulfur metabolism [goid GO:0006790] [evidence ISS] [pmid 10821189] --- --- --- --- --- --- S0003981 // YLL058W SGDID:S0003981, Chr XII from 23569-25296, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017654 // cdna:Genscan chromosome:SGD1:XII:23569:25296:1 // ensembl // 11 // --- /// GENEFINDER00000024739 // cdna:GeneFinder chromosome:SGD1:XII:23692:25296:1 // ensembl // 11 // --- /// YLL058W // cdna:known chromosome:SGD1:XII:23569:25296:1 gene:YLL058W // ensembl // 11 // --- --- No cerevisiae_gene -1.50324600698571 -1.26877899417333 1.27662342899577 -1.03227130968111 1.04245465167953 Max fold change below threshold 4 1.50324600698571 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778599_at YKL150W.S1 Mitochondrial NADH-cytochrome b5 reductase, involved in ergosterol biosynthesis 1.50310068581684 6675.39965820313 6079.48095703125 MCR1 6118 // electron transport // inferred from direct assay /// 6696 // ergosterol biosynthesis // inferred from direct assay /// 6979 // response to oxidative stress // inferred from mutant phenotype 5741 // mitochondrial outer membrane // inferred from direct assay /// 5758 // mitochondrial intermembrane space // inferred from direct assay 4128 // cytochrome-b5 reductase activity // inferred from direct assay 7301.40185546875 8286.732421875 5064.06689453125 4857.56005859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL150W /GEN=MCR1 /DB_XREF=GI:6322699 /SEG=NC_001143:+166549,167457 /DEF=NADH-cytochrome b5 reductase /NOTE=Mcr1p; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence IDA] [pmid 8001120]; go_component: mitochondrial outer membrane [goid GO:0005741] [evidence IDA] [pmid 8001120]; go_function: cytochrome-b5 reductase activity [goid GO:0004128] [evidence IDA] [pmid 8001120]; go_process: electron transport [goid GO:0006118] [evidence IDA] [pmid 10622712]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence IDA] [pmid 10622712]; go_process: response to oxidative stress [goid GO:0006979] [evidence IMP] [pmid 11420140] --- --- --- --- --- S0001633 // span:12-31 // numtm:1 S0001633 // MCR1 SGDID:S0001633, Chr XI from 166549-167457, Verified ORF // sgd // 11 // --- /// GENSCAN00000018306 // cdna:Genscan chromosome:SGD1:XI:166549:167457:1 // ensembl // 11 // --- /// GENEFINDER00000022996 // cdna:GeneFinder chromosome:SGD1:XI:166792:167457:1 // ensembl // 11 // --- /// YKL150W // cdna:known chromosome:SGD1:XI:166549:167457:1 gene:YKL150W // ensembl // 11 // --- --- No cerevisiae_gene -1.39965193263222 1.13495087462803 -1.24943002524884 -1.44180596495548 -1.50310068581684 Max fold change below threshold 4 1.50310068581684 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769365_at YPL154C.S1 Vacuolar aspartyl protease (proteinase A), required for the posttranslational precursor maturation of vacuolar proteinases; synthesized as a zymogen, self-activates 1.50287160806996 6327.0224609375 6536.97509765625 PEP4 7039 // vacuolar protein catabolism // inferred from mutant phenotype /// 7039 // vacuolar protein catabolism // traceable author statement /// 9267 // cellular response to starvation // inferred from mutant phenotype /// 16237 // microautophagy // inferred from mutant phenotype /// 30435 // sporulation // inferred from mutant phenotype 324 // vacuole (sensu Fungi) // traceable author statement /// 328 // vacuolar lumen (sensu Fungi) // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 4175 // endopeptidase activity // traceable author statement /// 4196 // saccharopepsin activity // traceable author statement 7683.46044921875 7458.48193359375 5195.56298828125 5390.48974609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL154C /GEN=PEP4 /DB_XREF=GI:6325103 /SEG=NC_001148:-259713,260930 /DEF=vacuolar proteinase A /NOTE=Pep4p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence TAS] [pmid 2674123]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 2674123]; go_function: saccharopepsin activity [goid GO:0004196] [evidence TAS] [pmid 2674123]; go_process: cellular response to starvation [goid GO:0009267] [evidence IMP] [pmid 2674123]; go_process: microautophagy [goid GO:0016237] [evidence IMP] [pmid 12529432]; go_process: sporulation [goid GO:0030435] [evidence IMP] [pmid 2674123]; go_process: vacuolar protein catabolism [goid GO:0007039] [evidence IMP,TAS] [pmid 2674123] --- --- --- --- --- --- S0006075 // PEP4 SGDID:S0006075, Chr XVI from 260930-259713, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017070 // cdna:Genscan chromosome:SGD1:XVI:259713:260930:-1 // ensembl // 11 // --- /// GENEFINDER00000021021 // cdna:GeneFinder chromosome:SGD1:XVI:259713:262703:-1 // ensembl // 11 // --- /// YPL154C // cdna:known chromosome:SGD1:XVI:259713:260930:-1 gene:YPL154C // ensembl // 11 // --- --- No cerevisiae_gene -1.50287160806996 -1.03016411618719 -1.32707333927839 -1.47885040881018 -1.42537335402347 Max fold change below threshold 4 1.50287160806996 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772205_at YLR319C.S1 Actin- and formin-interacting protein, involved in actin cable nucleation and polarized cell growth; isolated as bipolar budding mutant; potential Cdc28p substrate 1.50283830376421 117.913795471191 186.22566986084 BUD6 282 // bud site selection // inferred from mutant phenotype /// 282 // bud site selection // inferred from physical interaction /// 910 // cytokinesis // traceable author statement /// 6970 // response to osmotic stress // traceable author statement /// 7015 // actin filament organization // inferred from physical interaction /// 7121 // bipolar bud site selection // traceable author statement /// 7266 // Rho protein signal transduction // inferred from physical interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction 133 // polarisome // traceable author statement /// 30478 // actin cap // inferred from direct assay 5519 // cytoskeletal regulatory protein binding // inferred from physical interaction 167.946319580078 111.752754211426 124.074836730957 204.505020141602 0.000244141003349796 0.00195312988944352 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR319C /GEN=BUD6 /DB_XREF=GI:6323351 /SEG=NC_001144:-769318,771684 /DEF=Actin- and formin-interacting protein, involved in actin cable nucleation and polarized cell growth; isolated as bipolar budding mutant; potential Cdc28p substrate /NOTE=Bud6p; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IDA] [pmid 10652251]; go_component: polarisome [goid GO:0000133] [evidence TAS] [pmid 10639324]; go_function: cytoskeletal regulatory protein binding [goid GO:0005519] [evidence IPI] [pmid 10639324]; go_process: Rho protein signal transduction [goid GO:0007266] [evidence IPI] [pmid 10639324]; go_process: actin filament organization [goid GO:0007015] [evidence IPI] [pmid 10639324]; go_process: bud site selection [goid GO:0000282] [evidence IMP,IPI] [pmid 10639324]; go_process: cytokinesis [goid GO:0000910] [evidence TAS] [pmid 10652251]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IMP,IPI] [pmid 10639324]; go_process: polar budding [goid GO:0007121] [evidence TAS] [pmid 10652251]; go_process: response to osmotic stress [goid GO:0006970] [evidence TAS] [pmid 10652251] --- --- --- --- --- --- S0004311 // BUD6 SGDID:S0004311, Chr XII from 771684-769318, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018066 // cdna:Genscan chromosome:SGD1:XII:769318:771678:-1 // ensembl // 11 // --- /// GENEFINDER00000024678 // cdna:GeneFinder chromosome:SGD1:XII:769318:771678:-1 // ensembl // 11 // --- /// YLR319C // cdna:known chromosome:SGD1:XII:769318:771684:-1 gene:YLR319C // ensembl // 11 // --- --- No cerevisiae_gene -1.01249421725851 -1.50283830376421 1.29806160524707 -1.35358888236341 1.2176808676304 Max fold change below threshold 4 1.50283830376421 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772190_at YGL128C.S1 Component of a complex containing Cef1p, putatively involved in pre-mRNA splicing; has similarity to E. coli DnaJ and other DnaJ-like proteins and to S. pombe Cwf23p 1.50267387299987 480.53645324707 747.400604248047 CWC23 --- 5681 // spliceosome complex // inferred from physical interaction --- 682.191101074219 453.984802246094 507.088104248047 812.610107421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL128C /GEN=CWC23 /DB_XREF=GI:37362651 /SEG=NC_001139:-269297,270148 /DEF=Component of a complex containing Cef1p, putatively involved in pre-mRNA splicing; has similarity to E.coli DnaJ and other DnaJ-like proteins and to S. pombe Cwf23p /NOTE=Cwc23p; go_component: spliceosome complex [goid GO:0005681] [evidence IPI] [pmid 11884590]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 2.99999990500336E-15 --- S0003096 // CWC23 SGDID:S0003096, Chr VII from 270150-269299, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019254 // cdna:Genscan chromosome:SGD1:VII:269299:270150:-1 // ensembl // 11 // --- /// YGL128C // cdna:known chromosome:SGD1:VII:269299:270150:-1 gene:YGL128C // ensembl // 11 // --- --- No cerevisiae_gene -1.1523387839336 -1.50267387299987 1.17126095965302 -1.34531079581492 1.19117664557965 Max fold change below threshold 4 1.50267387299987 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sc-TDH1-M_s_at AFFX-r2-Sc-TDH1-M Glyceraldehyde-3-phosphate dehydrogenase, isozyme 2, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall /// Glyceraldehyde-3-phosphate dehydrogenase, isozyme 1, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall /// Glyceraldehyde-3-phosphate dehydrogenase, isozyme 3, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall 1.50267162515166 8183.44262695313 7370.92456054688 TDH2 /// TDH1 /// TDH3 6094 // gluconeogenesis // inferred from expression pattern /// 6096 // glycolysis // inferred from expression pattern 5737 // cytoplasm // inferred from direct assay /// 5811 // lipid particle // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay 4365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // inferred from direct assay 8851.404296875 10396.64453125 5970.24072265625 5890.44482421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=TDH1 SGD:YJL052W Glyceraldehyde-3-phosphate dehydrogenase 1 (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- S0003424 // TDH3 SGDID:S0003424, Chr VII from 883815-882817, reverse complement, Verified ORF // sgd // 11 // --- /// S0003588 // TDH1 SGDID:S0003588, Chr X from 338187-339185, Verified ORF // sgd // 11 // --- /// S0003769 // TDH2 SGDID:S0003769, Chr X from 454595-453597, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019490 // cdna:Genscan chromosome:SGD1:VII:882817:883815:-1 // ensembl // 11 // --- /// GENEFINDER00000021506 // cdna:GeneFinder chromosome:SGD1:VII:882817:883815:-1 // ensembl // 11 // --- /// GENSCAN00000024101 // cdna:Genscan chromosome:SGD1:X:338187:339185:1 // ensembl // 11 // --- /// GENEFINDER00000024436 // cdna:GeneFinder chromosome:SGD1:X:338187:339185:1 // ensembl // 11 // --- /// GENSCAN00000024141 // cdna:Genscan chromosome:SGD1:X:453597:454595:-1 // ensembl // 11 // --- /// GENEFINDER00000024372 // cdna:GeneFinder chromosome:SGD1:X:453597:454595:-1 // ensembl // 11 // --- /// YGR192C // cdna:known chromosome:SGD1:VII:882817:883815:-1 gene:YGR192C // ensembl // 11 // --- /// YJL052W // cdna:known chromosome:SGD1:X:338187:339185:1 gene:YJL052W // ensembl // 11 // --- /// YJR009C // cdna:known chromosome:SGD1:X:453597:454595:-1 gene:YJR009C // ensembl // 11 // --- --- AFFX_control cerevisiae_gene -1.40597065790412 1.17457571505581 -1.39067046581389 -1.4825875049368 -1.50267162515166 Max fold change below threshold 4 1.50267162515166 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774885_at YJL172W.S1 Vacuolar carboxypeptidase yscS; expression is induced under low-nitrogen conditions 1.5025964918392 2544.36865234375 2055.79992675781 CPS1 6508 // proteolysis and peptidolysis // inferred from mutant phenotype /// 6508 // proteolysis and peptidolysis // traceable author statement /// 6807 // nitrogen compound metabolism // inferred from mutant phenotype 324 // vacuole (sensu Fungi) // traceable author statement 4226 // Gly-X carboxypeptidase activity // inferred from mutant phenotype /// 4226 // Gly-X carboxypeptidase activity // traceable author statement 2018.47998046875 2055.7763671875 3032.9609375 2093.11987304688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL172W /GEN=CPS1 /DB_XREF=GI:6322289 /SEG=NC_001142:+97731,99461 /DEF=Vacuolar carboxypeptidase yscS; expression is induced under low-nitrogen conditions /NOTE=Cps1p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence TAS] [pmid 2026161]; go_function: Gly-X carboxypeptidase activity [goid GO:0004226] [evidence IMP,TAS] [pmid 2026161]; go_process: nitrogen metabolism [goid GO:0006807] [evidence IMP] [pmid 2026161]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence IMP,TAS] [pmid 2026161] --- --- --- --- --- S0003708 // span:21-43 // numtm:1 S0003708 // CPS1 SGDID:S0003708, Chr X from 97731-99461, Verified ORF // sgd // 11 // --- /// GENSCAN00000024007 // cdna:Genscan chromosome:SGD1:X:97731:99461:1 // ensembl // 11 // --- /// GENEFINDER00000024404 // cdna:GeneFinder chromosome:SGD1:X:97731:99461:1 // ensembl // 11 // --- /// YJL172W // cdna:known chromosome:SGD1:X:97731:99461:1 gene:YJL172W // ensembl // 11 // --- --- No cerevisiae_gene 1.35150938097128 1.01847746179285 1.33950893683293 1.5025964918392 1.03697826745886 Max fold change below threshold 4 1.5025964918392 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779466_at YHR073W.S1 Member of an oxysterol-binding protein family with seven members in S. cerevisiae; family members have overlapping, redundant functions in sterol metabolism and collectively perform a function essential for viability 1.50257753180991 427.587844848633 597.795623779297 OSH3 6694 // steroid biosynthesis // inferred from mutant phenotype /// 6694 // steroid biosynthesis // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay 8142 // oxysterol binding // inferred from sequence similarity 555.928100585938 378.063812255859 477.111877441406 639.663146972656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR073W /GEN=OSH3 /DB_XREF=GI:6321864 /SEG=NC_001140:+242583,245573 /DEF=Member of an oxysterol-binding protein family with seven members in S. cerevisiae; family members have overlapping, redundant functions in sterol metabolism and collectively perform a function essential for viability /NOTE=Osh3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11408574]; go_function: oxysterol binding [goid GO:0008142] [evidence ISS] [pmid 11238399]; go_process: steroid biosynthesis [goid GO:0006694] [evidence IGI,IMP] [pmid 11238399] --- --- --- --- --- --- S0001115 // OSH3 SGDID:S0001115, Chr VIII from 242583-245573, Verified ORF // sgd // 11 // --- /// GENSCAN00000016617 // cdna:Genscan chromosome:SGD1:VIII:242583:245573:1 // ensembl // 11 // --- /// GENEFINDER00000020225 // cdna:GeneFinder chromosome:SGD1:VIII:243021:245573:1 // ensembl // 11 // --- /// YHR073W // cdna:known chromosome:SGD1:VIII:242583:245573:1 gene:YHR073W // ensembl // 11 // --- YHR073C-B // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene 1.08343047888273 -1.47046102420854 1.50257753180991 -1.16519442686524 1.15062207918338 Max fold change below threshold 4 1.50257753180991 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775112_at YDR293C.S1 Protein with a role in maintenance of cellular integrity, interacts with components of the TOR pathway; ssd1 mutant of a clinical S. cerevisiae strain displays elevated virulence 1.50232456990431 2762.60815429688 1855.74310302734 SSD1 7047 // cell wall organization and biogenesis // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay 3723 // RNA binding // inferred from direct assay 1857.96508789063 2791.2666015625 2733.94970703125 1853.52111816406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR293C /GEN=SSD1 /DB_XREF=GI:6320499 /SEG=NC_001136:-1045632,1049384 /DEF=Product of gene unknown /NOTE=Ssd1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9195905]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 9195905]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IGI] [pmid 11805047] --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 0.509999990463257 --- S0002701 // SSD1 SGDID:S0002701, Chr IV from 1049386-1045634, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023773 // cdna:GeneFinder chromosome:SGD1:IV:1045634:1049386:-1 // ensembl // 11 // --- /// GENSCAN00000025324 // cdna:Genscan chromosome:SGD1:IV:1045634:1049386:-1 // ensembl // 11 // --- /// YDR293C // cdna:known chromosome:SGD1:IV:1045634:1049386:-1 gene:YDR293C // ensembl // 11 // --- --- No cerevisiae_gene -1.4497648011895 1.50232456990431 -1.02077107115691 1.47147528489631 -1.00239758246238 Max fold change below threshold 4 1.50232456990431 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775710_at YIL146C.S1 Non-essential protein of unknown function 1.50221996705247 1209.87457275391 1063.08456420898 ECM37 7047 // cell wall organization and biogenesis // inferred from mutant phenotype --- --- 1001.60552978516 1105.82092285156 1313.92822265625 1124.56359863281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL146C /GEN=ECM37 /DB_XREF=GI:6322045 /SEG=NC_001141:-74184,75773 /DEF=Non-essential protein of unknown function /NOTE=Ecm37p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584] --- --- --- --- --- S0001408 // span:389-411 // numtm:1 S0001408 // ECM37 SGDID:S0001408, Chr IX from 75773-74184, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019084 // cdna:GeneFinder chromosome:SGD1:IX:74184:75722:-1 // ensembl // 11 // --- /// YIL146C // cdna:known chromosome:SGD1:IX:74184:75773:-1 gene:YIL146C // ensembl // 11 // --- --- No cerevisiae_gene -1.50221996705247 1.10404834035687 1.09123968140751 1.31182205327689 1.12276097244993 Max fold change below threshold 4 1.50221996705247 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771826_at YOL043C.S1 DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase involved in base excision repair, localizes to the nucleus 1.50218109705143 468.828521728516 546.547897338867 NTG2 6284 // base-excision repair // inferred from direct assay /// 6285 // base-excision repair, AP site formation // inferred from direct assay 5634 // nucleus // inferred from direct assay 703 // pyrimidine-specific oxidized base lesion DNA N-glycosylase activity // inferred from direct assay /// 703 // pyrimidine-specific oxidized base lesion DNA N-glycosylase activity // inferred from sequence similarity /// 3906 // DNA-(apurinic or apyrimidinic site) lyase activity // inferred from direct assay 511.942474365234 340.799438476563 596.857604980469 581.1533203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL043C /GEN=NTG2 /DB_XREF=GI:6324530 /SEG=NC_001147:-248390,249532 /DEF=DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase involved in base excision repair, localizes to the nucleus /NOTE=Ntg2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10471279]; go_function: DNA-(apurinic or apyrimidinic site) lyase activity [goid GO:0003906] [evidence IDA] [pmid 14500818]; go_function: pyrimidine-specific oxidized base lesion DNA N-glycosylase activity [goid GO:0000703] [evidence IDA,ISS] [pmid 9020769]; go_process: base-excision repair [goid GO:0006284] [evidence IDA] [pmid 14500818]; go_process: base-excision repair, AP site formation [goid GO:0006285] [evidence IDA] [pmid 9826748] --- --- --- --- --- --- S0005403 // NTG2 SGDID:S0005403, Chr XV from 249532-248390, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017433 // cdna:Genscan chromosome:SGD1:XV:248390:249532:-1 // ensembl // 11 // --- /// YOL043C // cdna:known chromosome:SGD1:XV:248390:249532:-1 gene:YOL043C // ensembl // 11 // --- --- No cerevisiae_gene -1.39008367434251 -1.50218109705143 1.25375028367548 1.16586850059769 1.13519262302485 Max fold change below threshold 4 1.50218109705143 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777404_at YER068W.S1 Component of the CCR4-NOT transcription regulatory complex, which represses transcription, at least in part, by inhibiting functional TBP-DNA interactions and also aids in transcription elongation; interacts with C-terminal region of Not1p 1.50213491983977 1711.53308105469 1665.57391357422 MOT2 289 // poly(A) tail shortening // inferred from direct assay /// 747 // conjugation with cellular fusion // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay /// 30015 // CCR4-NOT core complex // inferred from physical interaction 175 // 3'-5'-exoribonuclease activity // inferred from direct assay /// 16564 // transcriptional repressor activity // traceable author statement 1569.3056640625 1526.05310058594 1897.01306152344 1761.84216308594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER068W /GEN=MOT2 /DB_XREF=GI:6320912 /SEG=NC_001137:+293048,294811 /DEF=Component of the CCR4-NOT transcription regulatory complex, which represses transcription, at least in part, by inhibiting functional TBP-DNA interactions and also aids in transcription elongation; interacts with C-terminal region of Not1p /NOTE=Mot2p; go_component: CCR4-NOT core complex [goid GO:0030015] [evidence IPI] [pmid 10490603]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11889048]; go_function: 3'-5'-exoribonuclease activity [goid GO:0000175] [evidence IDA] [pmid 11889048]; go_function: transcriptional repressor activity [goid GO:0016564] [evidence TAS] [pmid 11907266]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IMP] [pmid 8164670]; go_process: poly(A) tail shortening [goid GO:0000289] [evidence IDA] [pmid 11889048]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IPI] [pmid 10490603] --- --- --- --- --- --- S0000870 // MOT2 SGDID:S0000870, Chr V from 293048-294811, Verified ORF // sgd // 11 // --- /// GENSCAN00000016862 // cdna:Genscan chromosome:SGD1:V:293048:294811:1 // ensembl // 11 // --- /// GENEFINDER00000019723 // cdna:GeneFinder chromosome:SGD1:V:293165:294811:1 // ensembl // 11 // --- /// YER068W // cdna:known chromosome:SGD1:V:293048:294811:1 gene:YER068W // ensembl // 11 // --- --- No cerevisiae_gene 1.50213491983977 -1.02834276439002 -1.08495470631813 1.20882317891633 1.12268897222037 Max fold change below threshold 4 1.50213491983977 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778328_at YEL017C-A.S1 May regulate plasma membrane H(+)-ATPase; nearly identical to PMP1; Proteolipid associated with plasma membrane H(+)-ATPase (Pma1p) 1.50163936817267 5082.8876953125 5538.86499023438 PMP2 6812 // cation transport // inferred from genetic interaction 16020 // membrane // inferred from direct assay --- 6434.716796875 5880.6474609375 4285.1279296875 4643.01318359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL017C-A /GEN=PMP2 /DB_XREF=GI:6320819 /SEG=NC_001137:-122798,122929 /DEF=May regulate plasma membrane H(+)-ATPase; nearly identical to PMP1 /NOTE=Pmp2p; go_component: membrane [goid GO:0016020] [evidence IDA] [pmid 8063750]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cation transport [goid GO:0006812] [evidence IGI] [pmid 8063750] --- --- --- --- --- S0002103 // span:10-29 // numtm:1 S0002103 // PMP2 SGDID:S0002103, Chr V from 122929-122798, reverse complement, Verified ORF // sgd // 11 // --- /// YEL017C-A // cdna:known chromosome:SGD1:V:122798:122929:-1 gene:YEL017C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.35248291141131 -1.09421910420884 -1.4948649076938 -1.50163936817267 -1.38589242425852 Max fold change below threshold 4 1.50163936817267 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769719_at YFL039C.S1 Actin, structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions 1.50162506518625 ACT1 1 // mitochondrion inheritance // traceable author statement /// 11 // vacuole inheritance // traceable author statement /// 132 // establishment of mitotic spindle orientation // traceable author statement /// 910 // cytokinesis // traceable author statement /// 1300 // chronological cell aging // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 6887 // exocytosis // traceable author statement /// 6897 // endocytosis // traceable author statement /// 6970 // response to osmotic stress // traceable author statement /// 7047 // cell wall organization and biogenesis // traceable author statement /// 7119 // budding cell isotropic bud growth // traceable author statement /// 9306 // protein secretion // traceable author statement /// 16573 // histone acetylation // inferred from direct assay /// 30037 // actin filament reorganization during cell cycle // traceable author statement /// 30050 // vesicle transport along actin filament // traceable author statement /// 30437 // sporulation (sensu Fungi) // traceable author statement /// 30468 // establishment of cell polarity (sensu Fungi) // traceable author statement 123 // histone acetyltransferase complex // inferred from direct assay /// 142 // contractile ring (sensu Saccharomyces) // traceable author statement /// 812 // SWR1 complex // inferred from physical interaction /// 5884 // actin filament // traceable author statement /// 30479 // actin cortical patch // traceable author statement /// 30482 // actin cable // traceable author statement /// 31011 // INO80 complex // inferred from physical interaction /// 43189 // H4/H2A histone acetyltransferase complex // inferred from physical interaction 5200 // structural constituent of cytoskeleton // traceable author statement 9861.689453125 11514.2978515625 7024.10205078125 6619.455078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL039C /GEN=ACT1 /DB_XREF=GI:14318479 /SEG=NC_001138:-53260,54695 /DEF=Actin, structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions /NOTE=Act1p; go_component: SWR1 complex [goid GO:0000812] [evidence IPI] [pmid 14690608]; go_component: actin cable (sensu Fungi) [goid GO:0030482] [evidence IDA] [pmid 10652251]; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10652251]; go_component: actin filament [goid GO:0005884] [evidence TAS]; go_component: contractile ring (sensu Saccharomyces) [goid GO:0000142] [evidence IDA] [pmid 10652251]; go_component: histone acetyltransferase complex [goid GO:0000123] [evidence IDA] [pmid 10911987]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence TAS]; go_process: apical bud growth [goid GO:0007118] [evidence IMP,IPI] [pmid 10652251]; go_process: cell cycle-dependent actin filament reorganization [goid GO:0030037] [evidence TAS]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence TAS] [pmid 10639324]; go_process: cytokinesis [goid GO:0000910] [evidence TAS]; go_process: endocytosis [goid GO:0006897] [evidence TAS]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence TAS]; go_process: exocytosis [goid GO:0006887] [evidence TAS]; go_process: histone acetylation [goid GO:0016573] [evidence IDA] [pmid 10911987]; go_process: isotropic bud growth [goid GO:0007119] [evidence IGI,IMP,IPI] [pmid 10652251]; go_process: mitochondrion inheritance [goid GO:0000001] [evidence TAS] [pmid 10639324]; go_process: mitotic spindle orientation (sensu Fungi) [goid GO:0030607] [evidence TAS] [pmid 10639324]; go_process: protein secretion [goid GO:0009306] [evidence TAS]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IDA] [pmid 10911987]; go_process: response to osmotic stress [goid GO:0006970] [evidence TAS]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence TAS]; go_process: vacuole inheritance [goid GO:0000011] [evidence TAS] [pmid 10639324]; go_process: vesicle transport along actin filament [goid GO:0030050] [evidence TAS] [pmid 10652251] --- --- --- --- --- --- S0001855 // ACT1 SGDID:S0001855, Chr VI from 54695-54686,54377-53260, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018587 // cdna:GeneFinder chromosome:SGD1:VI:53260:54342:-1 // ensembl // 11 // --- /// GENSCAN00000023208 // cdna:Genscan chromosome:SGD1:VI:53260:54342:-1 // ensembl // 11 // --- /// YFL039C // cdna:known chromosome:SGD1:VI:53260:54695:-1 gene:YFL039C // ensembl // 11 // --- --- No cerevisiae_gene -1.50162506518625 1.16757862902627 -1.34197911144783 -1.40397866970457 -1.48980381870321 Max fold change below threshold 4 1.50162506518625 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775842_at YHL021C.S1 The authentic, non-tagged protein was localized to the mitochondria 1.5015110920201 5706.619140625 5003.14086914063 --- --- 5739 // mitochondrion // inferred from direct assay --- 5898.76220703125 6925.88232421875 4487.35595703125 4107.51953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL021C /GEN=SPO11 /DB_XREF=GI:6321766 /SEG=NC_001140:-64458,65855 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Yhl021cp --- --- --- --- --- --- S0001013 // FMP12 SGDID:S0001013, Chr VIII from 65855-64458, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016536 // cdna:Genscan chromosome:SGD1:VIII:64458:65855:-1 // ensembl // 11 // --- /// GENEFINDER00000020164 // cdna:GeneFinder chromosome:SGD1:VIII:64458:65855:-1 // ensembl // 11 // --- /// YHL021C // cdna:known chromosome:SGD1:VIII:64458:65855:-1 gene:YHL021C // ensembl // 11 // --- --- No cerevisiae_gene -1.5015110920201 1.17412468601687 -1.36620453873853 -1.31452959460202 -1.43608865695062 Max fold change below threshold 4 1.5015110920201 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775183_at YDR005C.S1 Negative regulator of RNA polymerase III; component of several signaling pathways that repress polymerase III transcription in response to changes in cellular environment; targets the initiation factor TFIIIB 1.50124715445677 556.097961425781 842.007751464844 MAF1 16480 // negative regulation of transcription from RNA polymerase III promoter // inferred from mutant phenotype /// 16480 // negative regulation of transcription from RNA polymerase III promoter // inferred from physical interaction 5634 // nucleus // inferred from direct assay --- 806.630798339844 537.30712890625 574.888793945313 877.384704589844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR005C /GEN=MAF1 /DB_XREF=GI:6320208 /SEG=NC_001136:-456833,458100 /DEF=Mod5 protein sorting. Negative effector of Pol III synthesis. /NOTE=Maf1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11438659]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: negative regulation of transcription from Pol III promoter [goid GO:0016480] [evidence IMP,IPI] [pmid 11438659] --- --- --- --- --- --- S0002412 // MAF1 SGDID:S0002412, Chr IV from 458100-458095,458014-456833, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000025103 // cdna:Genscan chromosome:SGD1:IV:456833:457549:-1 // ensembl // 11 // --- /// YDR005C // cdna:known chromosome:SGD1:IV:456833:458100:-1 gene:YDR005C // ensembl // 11 // --- GENEFINDER00000023889 // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene -1.48197875729813 -1.50124715445677 1.29512352564222 -1.40310753459664 1.08771535428057 Max fold change below threshold 4 1.50124715445677 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771438_at YOR217W.S1 Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon 1.50116259730543 451.439102172852 588.110504150391 RFC1 6272 // leading strand elongation // inferred from direct assay /// 6281 // DNA repair // inferred from mutant phenotype /// 6298 // mismatch repair // traceable author statement 5663 // DNA replication factor C complex // inferred from direct assay 17076 // purine nucleotide binding // inferred from sequence similarity 550.070495605469 366.429656982422 536.448547363281 626.150512695313 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR217W /GEN=RFC1 /DB_XREF=GI:6324791 /SEG=NC_001147:+749301,751886 /DEF=RFC is a DNA binding protein and ATPase that acts as a processivity factor for DNA polymerases delta and epsilon and loads proliferating cell nuclear antigen (PCNA) on DNA /NOTE=Rfc1p; go_component: DNA replication factor C complex [goid GO:0005663] [evidence IDA] [pmid 7651383]; go_function: purine nucleotide binding [goid GO:0017076] [evidence ISS] [pmid 7651383]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 8770585]; go_process: leading strand elongation [goid GO:0006272] [evidence IDA] [pmid 1346062]; go_process: mismatch repair [goid GO:0006298] [evidence TAS] [pmid 10072354] --- --- --- --- --- --- S0005743 // RFC1 SGDID:S0005743, Chr XV from 749301-751886, Verified ORF // sgd // 11 // --- /// GENSCAN00000017631 // cdna:Genscan chromosome:SGD1:XV:749301:751886:1 // ensembl // 11 // --- /// GENEFINDER00000022567 // cdna:GeneFinder chromosome:SGD1:XV:749301:751886:1 // ensembl // 11 // --- /// YOR217W // cdna:known chromosome:SGD1:XV:749301:751886:1 gene:YOR217W // ensembl // 11 // --- YOR218C // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene -1.27821415044479 -1.50116259730543 1.28677254724209 -1.02539283275002 1.13830957613188 Max fold change below threshold 4 1.50116259730543 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777269_at YJR050W.S1 Component of the spliceosome complex involved in pre-mRNA splicing, auxiliary splicing factor that may modulate Syf1p activity and help optimize splicing; isy1 syf2 double mutation activates the spindle checkpoint, causing cell cycle arrest 1.50104478203023 416.416244506836 439.614593505859 ISY1 398 // nuclear mRNA splicing, via spliceosome // inferred from genetic interaction /// 398 // nuclear mRNA splicing, via spliceosome // inferred from direct assay 5681 // spliceosome complex // inferred from direct assay /// 5681 // spliceosome complex // inferred from genetic interaction 31202 // RNA splicing factor activity, transesterification mechanism // inferred from mutant phenotype 403.792358398438 339.426177978516 493.406311035156 475.436828613281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR050W /GEN=ISY1 /DB_XREF=GI:6322510 /SEG=NC_001142:+528611,529318 /DEF=Component of the spliceosome complex involved in pre-mRNA splicing, auxiliary splicing factor that may modulate Syf1p activity and help optimize splicing; isy1 syf2 double mutation activates the spindle checkpoint, causing cell cycle arrest /NOTE=Isy1p; go_component: spliceosome complex [goid GO:0005681] [evidence IDA,IGI] [pmid 11018040]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IMP] [pmid 12384582]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IDA,IGI] [pmid 11018040] --- --- --- --- --- --- S0003811 // ISY1 SGDID:S0003811, Chr X from 528611-529318, Verified ORF // sgd // 11 // --- /// YJR050W // cdna:known chromosome:SGD1:X:528611:529318:1 gene:YJR050W // ensembl // 11 // --- --- No cerevisiae_gene -1.29791901825037 -1.18963234009604 1.50104478203023 1.22193077895816 1.1774289897387 Max fold change below threshold 4 1.50104478203023 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775213_at YJR131W.S1 Alpha-1,2-mannosidase involved in ER quality control; catalyzes the removal of one mannose residue from Man9GlcNAc to produce a single isomer of Man8GlcNAc in N-linked oligosaccharide biosynthesis; integral to ER membrane 1.50090733503735 348.131805419922 420.854705810547 MNS1 6487 // N-linked glycosylation // inferred from mutant phenotype /// 30433 // ER-associated protein catabolism // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay 4571 // mannosyl-oligosaccharide 1,2-alpha-mannosidase activity // inferred from direct assay 336.561614990234 335.703552246094 360.56005859375 505.147796630859 0.00122069998178631 0.00122069998178631 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR131W /GEN=MNS1 /DB_XREF=GI:6322591 /SEG=NC_001142:+667559,669208 /DEF=specific alpha-mannosidase /NOTE=Mns1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 8864657]; go_function: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [goid GO:0004571] [evidence IDA] [pmid 1714453]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IMP] [pmid 8439291] --- --- --- --- --- S0003892 // span:5-24 // numtm:1 S0003892 // MNS1 SGDID:S0003892, Chr X from 667559-669208, Verified ORF // sgd // 11 // --- /// GENSCAN00000024236 // cdna:Genscan chromosome:SGD1:X:667670:669208:1 // ensembl // 11 // --- /// GENEFINDER00000024301 // cdna:GeneFinder chromosome:SGD1:X:667670:669208:1 // ensembl // 11 // --- /// YJR131W // cdna:known chromosome:SGD1:X:667559:669208:1 gene:YJR131W // ensembl // 11 // --- --- No cerevisiae_gene -1.09883851500658 -1.00255601329923 1.42289483808742 1.0713047553097 1.50090733503735 Max fold change below threshold 4 1.50090733503735 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773952_at YJL071W.S1 Acetylglutamate synthase (glutamate N-acetyltransferase), mitochondrial enzyme that catalyzes the first step in the biosynthesis of the arginine precursor ornithine; forms a complex with Arg5,6p 1.50090374900993 296.984756469727 372.592086791992 ARG2 6526 // arginine biosynthesis // traceable author statement /// 6592 // ornithine biosynthesis // traceable author statement 5759 // mitochondrial matrix // inferred from direct assay 4042 // amino-acid N-acetyltransferase activity // inferred from direct assay /// 4042 // amino-acid N-acetyltransferase activity // inferred from mutant phenotype 369.384216308594 272.056427001953 321.9130859375 375.799957275391 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL071W /GEN=ARG2 /DB_XREF=GI:6322390 /SEG=NC_001142:+306048,307772 /DEF=Acetylglutamate synthase (glutamate N-acetyltransferase), mitochondrial enzyme that catalyzes the first step in the biosynthesis of the arginine precursor ornithine; forms a complex with Arg5,6p /NOTE=Arg2p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 205532]; go_function: amino-acid N-acetyltransferase activity [goid GO:0004042] [evidence IDA,IMP] [pmid 11553611]; go_process: arginine biosynthesis [goid GO:0006526] [evidence TAS] [pmid 11553611]; go_process: ornithine biosynthesis [goid GO:0006592] [evidence TAS] --- --- --- --- --- --- S0003607 // ARG2 SGDID:S0003607, Chr X from 306048-307772, Verified ORF // sgd // 11 // --- /// GENSCAN00000024084 // cdna:Genscan chromosome:SGD1:X:306048:307772:1 // ensembl // 11 // --- /// GENEFINDER00000024348 // cdna:GeneFinder chromosome:SGD1:X:306048:307772:1 // ensembl // 11 // --- /// YJL071W // cdna:known chromosome:SGD1:X:306048:307772:1 gene:YJL071W // ensembl // 11 // --- --- No cerevisiae_gene -1.50090374900993 -1.35774853907767 1.17293143694364 -1.14746567457127 1.01736874691321 Max fold change below threshold 4 1.50090374900993 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776232_at YER039C.S1 Protein of unknown function, has homology to Vrg4p 1.50050694156225 872.737762451172 1233.91290283203 HVG1 --- --- --- 1224.68896484375 816.183471679688 929.292053222656 1243.13684082031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER039C /GEN=HVG1 /DB_XREF=GI:6320877 /SEG=NC_001137:-228455,229204 /DEF=Protein of unknown function, has homology to Vrg4p /NOTE=Hvg1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000841 // span:13-35,85-107,124-143,158-180,187-209,213-232 // numtm:6 S0000841 // HVG1 SGDID:S0000841, Chr V from 229204-228455, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016837 // cdna:Genscan chromosome:SGD1:V:228455:229204:-1 // ensembl // 11 // --- /// YER039C // cdna:known chromosome:SGD1:V:228455:229204:-1 gene:YER039C // ensembl // 11 // --- YER038W-A // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene 1.04958001134695 -1.50050694156225 -1.03462328681303 -1.31787306326004 1.015063315263 Max fold change below threshold 4 1.50050694156225 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776283_at YOL101C.S1 Membrane protein involved in zinc metabolism, member of the four-protein IZH family, expression induced by fatty acids and altered zinc levels; deletion reduces sensitivity to excess zinc; possible role in sterol metabolism 1.50012645215087 154.911094665527 126.895503997803 IZH4 6629 // lipid metabolism // traceable author statement /// 6882 // zinc ion homeostasis // inferred from mutant phenotype /// 6882 // zinc ion homeostasis // inferred from sequence similarity 16020 // membrane // traceable author statement /// 16020 // membrane // inferred from sequence similarity /// 16021 // integral to membrane // inferred from sequence similarity 46872 // metal ion binding // inferred from sequence similarity 138.708419799805 162.862869262695 146.959320068359 115.082588195801 0.000732421991415322 0.00585938012227416 0.00585938012227416 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL101C /GEN=IZH4 /DB_XREF=GI:6324471 /SEG=NC_001147:-126981,127919 /DEF=Membrane protein involved in zinc metabolism, member of the four-protein IZH family, expression induced by fatty acids and altered zinc levels; deletion reduces sensitivity to excess zinc; possible role in sterol metabolism /NOTE=Izh4p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 12524434]; go_component: membrane [goid GO:0016020] [evidence ISS,TAS] [pmid 15060275]; go_function: metal ion binding [goid GO:0046872] [evidence ISS] [pmid 15060275]; go_process: lipid metabolism [goid GO:0006629] [evidence TAS] [pmid 15060275]; go_process: zinc ion homeostasis [goid GO:0006882] [evidence IMP,ISS] [pmid 15060275] --- --- --- --- --- S0005461 // span:66-88,103-125,142-161,165-187,200-222,237-255,275-297 // numtm:7 S0005461 // IZH4 SGDID:S0005461, Chr XV from 127919-126981, reverse complement, Verified ORF // sgd // 11 // --- /// YOL101C // cdna:known chromosome:SGD1:XV:126981:127919:-1 gene:YOL101C // ensembl // 11 // --- --- No cerevisiae_gene 1.50012645215087 1.17413830752129 1.02792287903881 1.05948377380741 -1.20529457995685 Max fold change below threshold 4 1.50012645215087 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1770114_at YDR460W.S1 Subunit of TFIIH and nucleotide excision repair factor 3 complexes, involved in transcription initiation, required for nucleotide excision repair; ring finger protein similar to mammalian CAK and TFIIH subunit 1.50010825926921 485.870147705078 576.333160400391 TFB3 717 // nucleotide-excision repair, DNA duplex unwinding // traceable author statement /// 6289 // nucleotide-excision repair // traceable author statement /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 7070 // negative regulation of transcription from RNA polymerase II promoter, mitotic // traceable author statement 112 // nucleotide excision repair factor 3 complex // traceable author statement /// 5675 // transcription factor TFIIH complex // traceable author statement /// 5675 // transcription factor TFIIH complex // inferred from direct assay 16251 // general RNA polymerase II transcription factor activity // traceable author statement 526.473999023438 419.82861328125 551.911682128906 626.192321777344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR460W /GEN=TFB3 /DB_XREF=GI:6320668 /SEG=NC_001136:+1383799,1384764 /DEF=Subunit of TFIIH and nucleotide excision repair factor 3 complexes, involved in transcription initiation, required for nucleotide excision repair; ring finger protein similar to mammalian CAK and TFIIH subunit /NOTE=Tfb3p; go_component: nucleotide excision repair factor 3 complex [goid GO:0000112] [evidence TAS] [pmid 10915862]; go_component: transcription factor TFIIH complex [goid GO:0005675] [evidence TAS] [pmid 9774381]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9774381]; go_process: negative regulation of transcription from Pol II promoter, mitotic [goid GO:0007070] [evidence TAS] [pmid 10384273]; go_process: nucleotide-excision repair [goid GO:0006289] [evidence TAS] [pmid 9774381]; go_process: nucleotide-excision repair, DNA duplex unwinding [goid GO:0000717] [evidence TAS] [pmid 10915862]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 10384286] --- --- --- --- --- --- S0002868 // TFB3 SGDID:S0002868, Chr IV from 1383801-1384766, Verified ORF // sgd // 11 // --- /// GENSCAN00000025460 // cdna:Genscan chromosome:SGD1:IV:1383801:1384766:1 // ensembl // 11 // --- /// GENEFINDER00000023914 // cdna:GeneFinder chromosome:SGD1:IV:1383807:1384766:1 // ensembl // 11 // --- /// YDR460W // cdna:known chromosome:SGD1:IV:1383801:1384766:1 gene:YDR460W // ensembl // 11 // --- --- No cerevisiae_gene -1.50010825926921 -1.25402124192699 1.27959574529751 1.04831707387763 1.18940787757586 Max fold change below threshold 4 1.50010825926921 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769798_at YGL036W.S1 Mtf1 Two Hybrid Clone 2 1.50010057101528 1720.21490478516 2179.20397949219 --- --- 5737 // cytoplasm // inferred from direct assay --- 2215.88989257813 1859.59948730469 1580.83032226563 2142.51806640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL036W /GEN=PNC1 /DB_XREF=GI:6321402 /SEG=NC_001139:+428604,431333 /DEF=Mtf1 Two Hybrid Clone 2 /NOTE=Ygl036wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003004 // YGL036W SGDID:S0003004, Chr VII from 428606-431335, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000019317 // cdna:Genscan chromosome:SGD1:VII:428606:431335:1 // ensembl // 10 // --- /// GENEFINDER00000021500 // cdna:GeneFinder chromosome:SGD1:VII:429392:431335:1 // ensembl // 10 // --- /// YGL036W // cdna:known chromosome:SGD1:VII:428606:431335:1 gene:YGL036W // ensembl // 10 // --- --- No cerevisiae_gene -1.17720740696498 -1.19159523741849 -1.50010057101528 -1.40172532204616 -1.03424560442328 Max fold change below threshold 4 1.50010057101528 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769422_at YAL013W.S1 Transcriptional modulator involved in the regulation of structural genes involved in phospholipid biosynthesis, also participates in regulation of metabolically unrelated genes as well as maintenance of mating efficiency and sporulation 1.49997632301103 1109.94705200195 1309.79266357422 DEP1 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 6644 // phospholipid metabolism // inferred from mutant phenotype --- --- 1370.7373046875 913.839294433594 1306.05480957031 1248.84802246094 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL013W /GEN=DEP1 /DB_XREF=GI:41629667 /SEG=NC_001133:+129273,130535 /DEF=Transcriptional modulator involved in the regulation of structural genes involved in phospholipid biosynthesis, also participates in regulation of metabolically unrelated genes as well as maintenance of mating efficiency and sporulation /NOTE=Dep1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: phospholipid metabolism [goid GO:0006644] [evidence IMP] [pmid 8056324]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP] [pmid 8056324] --- --- --- --- --- --- S0000011 // DEP1 SGDID:S0000011, Chr I from 129271-130533, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018215 // cdna:GeneFinder chromosome:SGD1:I:129271:130533:1 // ensembl // 11 // --- /// GENSCAN00000020369 // cdna:Genscan chromosome:SGD1:I:129271:130533:1 // ensembl // 11 // --- /// YAL013W // cdna:known chromosome:SGD1:I:129271:130533:1 gene:YAL013W // ensembl // 11 // --- --- No cerevisiae_gene -1.05632418921887 -1.49997632301103 -1.07503064997868 -1.04952510005186 -1.09760137345325 Max fold change below threshold 4 1.49997632301103 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776285_at YOR348C.S1 Proline permease, required for high-affinity transport of proline; also transports the toxic proline analog azetidine-2-carboxylate (AzC); PUT4 transcription is repressed in ammonia-grown cells 1.49988144492351 3059.49694824219 3606.39038085938 PUT4 6562 // proline catabolism // traceable author statement /// 15804 // neutral amino acid transport // inferred from direct assay 5886 // plasma membrane // inferred from sequence similarity 5296 // L-proline permease activity // inferred from mutant phenotype /// 5296 // L-proline permease activity // inferred from genetic interaction /// 15175 // neutral amino acid transporter activity // inferred from direct assay 3837.71948242188 3560.31201171875 2558.68188476563 3375.06127929688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR348C /GEN=PUT4 /DB_XREF=GI:6324924 /SEG=NC_001147:-986894,988777 /DEF=proline-specific permease (also capable of transporting alanine and glycine) /NOTE=Put4p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 10654085]; go_function: amino acid permease activity [goid GO:0015359] [evidence IDA] [pmid 12073087]; go_function: neutral amino acid transporter activity [goid GO:0015175] [evidence IDA] [pmid 10654085]; go_process: neutral amino acid transport [goid GO:0015804] [evidence IDA] [pmid 10654085] --- --- --- --- --- S0005875 // span:115-137,144-166,200-222,229-251,255-277,351-373,404-426,451-473,483-505,526-548,558-575 // numtm:11 S0005875 // PUT4 SGDID:S0005875, Chr XV from 988777-986894, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017800 // cdna:Genscan chromosome:SGD1:XV:986894:988777:-1 // ensembl // 11 // --- /// GENEFINDER00000022718 // cdna:GeneFinder chromosome:SGD1:XV:986894:988777:-1 // ensembl // 11 // --- /// YOR348C // cdna:known chromosome:SGD1:XV:986894:988777:-1 gene:YOR348C // ensembl // 11 // --- --- No cerevisiae_gene -1.34420457380016 -1.07791661792282 -1.21019303593695 -1.49988144492351 -1.13708142307312 Max fold change below threshold 4 1.49988144492351 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772826_at YKR063C.S1 Essential nuclear protein possibly involved in bud formation and morphogenesis; mutants require the SSD1-v allele for viability 1.49974468411366 325.694717407227 239.824073791504 LAS1 7117 // budding cell bud growth // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype 5634 // nucleus // traceable author statement /// 5739 // mitochondrion // inferred from direct assay --- 230.062881469727 345.035583496094 306.353851318359 249.585266113281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR063C /GEN=LAS1 /DB_XREF=GI:6322916 /SEG=NC_001143:-560431,561939 /DEF=May regulate expression of genes involved in bud formation and morphogenesis /NOTE=Las1p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 8582632]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: bud growth [goid GO:0007117] [evidence IMP] [pmid 8582632]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IMP] [pmid 8582632] --- --- --- --- --- --- S0001771 // LAS1 SGDID:S0001771, Chr XI from 561939-560431, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022949 // cdna:GeneFinder chromosome:SGD1:XI:560431:561939:-1 // ensembl // 11 // --- /// YKR063C // cdna:known chromosome:SGD1:XI:560431:561939:-1 gene:YKR063C // ensembl // 11 // --- --- No cerevisiae_gene -1.09607822055194 1.49974468411366 1.23850058773392 1.33160920771425 1.08485673359752 Max fold change below threshold 4 1.49974468411366 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779531_at YKL033W-A.S1 Similar to S. pombe hypothetical proteins 1.49957317623927 2609.11682128906 1872.83020019531 --- --- --- --- 1846.11059570313 2768.3779296875 2449.85571289063 1899.5498046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL033W-A /GEN=TUL1 /DB_XREF=GI:42759861 /SEG=NC_001143:+374148,374858 /DEF=Similar to S. pombe hypothetical proteins /NOTE=Ykl033w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007242 // YKL033W-A SGDID:S0007242, Chr XI from 374148-374858, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018393 // cdna:Genscan chromosome:SGD1:XI:374187:374858:1 // ensembl // 11 // --- /// GENEFINDER00000023124 // cdna:GeneFinder chromosome:SGD1:XI:374187:374858:1 // ensembl // 11 // --- /// YKL033W-A // cdna:known chromosome:SGD1:XI:374148:374858:1 gene:YKL033W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.01274612787203 1.49957317623927 -1.00847189481719 1.32703626672895 1.02894691634876 Max fold change below threshold 4 1.49957317623927 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
RPTR-Sc-J01347-2_at AFFX-Sc-J01347-2 --- 1.49949790456348 --- --- --- --- 2352.93212890625 3528.216796875 3188.04931640625 2441.3935546875 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL J01347 /FEA=CDS_2 /DB_XREF=AAB59341.1 GI:172192 /NOTE=Rep 1 protein --- --- --- --- --- --- AFFX-Sc-J01347-2 // --- // affx // --- // --- --- No No 1.24072161044076 1.49949790456348 1.19377210740007 1.35492616945488 1.03759625052269 Max fold change below threshold 4 1.49949790456348 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769837_at YGL179C.S1 Protein kinase, related to and functionally redundant with Elm1p and Pak1p for the phosphorylation and activation of Snf1p; functionally orthologous to LKB1, a mammalian kinase associated with Peutz-Jeghers cancer-susceptibility syndrome 1.49928755585921 203.869186401367 296.97673034668 TOS3 6006 // glucose metabolism // inferred from genetic interaction /// 6006 // glucose metabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4672 // protein kinase activity // inferred from sequence similarity 288.100128173828 192.158020019531 215.580352783203 305.853332519531 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL179C /GEN=TOS3 /DB_XREF=GI:6321259 /SEG=NC_001139:-163413,165095 /DEF=Putative protein kinase, related to and redundant with Elm1p and Pak1p in activating the SNF1 complex /NOTE=Tos3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 9020587]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 4.0E-57 /// hanks // 1.8.7 // AGC group; AGC VIII Flowering plant PVPK1 homologs; PsPK5 // 1.0E-61 scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 0.899999976158142 --- S0003147 // TOS3 SGDID:S0003147, Chr VII from 165097-163415, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019214 // cdna:Genscan chromosome:SGD1:VII:163415:165097:-1 // ensembl // 11 // --- /// YGL179C // cdna:known chromosome:SGD1:VII:163415:165097:-1 gene:YGL179C // ensembl // 11 // --- --- No cerevisiae_gene 1.44558896198439 -1.49928755585921 -1.028888210263 -1.33639324945142 1.06162164681507 Max fold change below threshold 4 1.49928755585921 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776409_at YMR022W.S1 Ubiquitin conjugating enzyme, involved in the ER-associated protein degradation pathway; requires Cue1p for recruitment to the ER membrane; proposed to be involved in chromatin assembly 1.49880206764321 1681.68719482422 1293.61785888672 QRI8 6333 // chromatin assembly or disassembly // inferred from mutant phenotype /// 30433 // ER-associated protein catabolism // inferred from direct assay 5783 // endoplasmic reticulum // traceable author statement 4840 // ubiquitin conjugating enzyme activity // traceable author statement /// 4842 // ubiquitin-protein ligase activity // inferred from direct assay 1234.68151855469 1512.83117675781 1850.54321289063 1352.55419921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR022W /GEN=QRI8 /DB_XREF=GI:6323664 /SEG=NC_001145:+318679,319176 /DEF=part of the HRDDER pathway of ER-associated protein degradation /NOTE=Qri8p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS] [pmid 11516167]; go_function: ubiquitin conjugating enzyme activity [goid GO:0004840] [evidence TAS] [pmid 11901211]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence IDA] [pmid 9172777]; go_process: ER-associated protein catabolism [goid GO:0030433] [evidence IDA] [pmid 12105183] --- --- --- --- --- --- S0004624 // QRI8 SGDID:S0004624, Chr XIII from 318679-319176, Verified ORF // sgd // 11 // --- /// YMR022W // cdna:known chromosome:SGD1:XIII:318679:319176:1 gene:YMR022W // ensembl // 11 // --- --- No cerevisiae_gene -1.16890250061308 1.22528049057438 1.1907244947383 1.49880206764321 1.09546808540719 Max fold change below threshold 4 1.49880206764321 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775191_at YIL089W.S1 Hypothetical protein 1.498779745413 157.965019226074 133.850044250488 --- --- --- --- 134.049255371094 117.135177612305 198.794860839844 133.650833129883 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL089W /GEN=RSM25 /DB_XREF=GI:6322102 /SEG=NC_001141:+195596,196213 /DEF=Hypothetical ORF /NOTE=Yil089wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001351 // span:61-83,121-139 // numtm:2 S0001351 // YIL089W SGDID:S0001351, Chr IX from 195596-196213, Uncharacterized ORF // sgd // 11 // --- /// YIL089W // cdna:known chromosome:SGD1:IX:195596:196213:1 gene:YIL089W // ensembl // 11 // --- --- No cerevisiae_gene 1.01006288864312 -1.14439793496341 1.498779745413 1.48299862083913 -1.00298106814511 Max fold change below threshold 4 1.498779745413 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777068_at SPAC2G11.07c.S1 --- 1.49877484484023 --- --- --- --- 7.48247623443604 9.21184539794922 11.2145471572876 8.44303131103516 0.0952147990465164 0.0461426004767418 0.149657994508743 0.334473013877869 A P A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2G11.07c /GEN=ptc3 /DEF=serinethreonine protein phosphatase --- --- --- --- --- --- SPAC2G11.07c // |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.13331494054966 1.23112257350772 1.01528834321423 1.49877484484023 1.12837395622834 Max fold change below threshold 4 1.49877484484023 Max fold change below threshold AAPAAA No 4 0 APAA 3 1 0 No No x = 1
1780113_at SPAC16E8.02.S1 --- 1.49855568898803 --- --- --- --- 9.62415981292725 14.4223394393921 12.763765335083 12.6152582168579 0.0676269978284836 0.00805663969367743 0.00415039015933871 0.030273400247097 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC16E8.02 /DEF=conserved protein (fungal and plant) --- --- --- --- --- --- SPAC16E8.02 // |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.23919139987136 1.49855568898803 1.1496030931671 1.32622125808204 1.3107906001221 Max fold change below threshold 4 1.49855568898803 Max fold change below threshold AAPPPP No 3 0 APPP 1 3 0 No No 2 < x = 3
1774842_at YJL159W.S1 O-mannosylated heat shock protein that is secreted and covalently attached to the cell wall via beta-1,3-glucan and disulfide bridges; required for cell wall stability; induced by heat shock, oxidative stress, and nitrogen limitation 1.4983828061873 7698.58032226563 7261.71875 HSP150 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 9277 // cell wall (sensu Fungi) // inferred from direct assay 5199 // structural constituent of cell wall // inferred from physical interaction 8646.205078125 9611.8583984375 5785.30224609375 5877.232421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL159W /GEN=HSP150 /DB_XREF=GI:42742255 /SEG=NC_001142:+120444,121607 /DEF=Heat shock protein, secretory glycoprotein /NOTE=Hsp150p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10209754]; go_function: structural constituent of cell wall [goid GO:0005199] [evidence IPI] [pmid 10209754]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 10407261] --- --- --- --- --- --- S0003695 // HSP150 SGDID:S0003695, Chr X from 120444-121607, Verified ORF // sgd // 11 // --- /// GENSCAN00000024017 // cdna:Genscan chromosome:SGD1:X:120444:121607:1 // ensembl // 11 // --- /// GENEFINDER00000024516 // cdna:GeneFinder chromosome:SGD1:X:120444:121607:1 // ensembl // 11 // --- /// YJL159W // cdna:known chromosome:SGD1:X:120444:121607:1 gene:YJL159W // ensembl // 11 // --- --- No cerevisiae_gene -1.4983828061873 1.11168522046228 -1.38277132160834 -1.49451225023946 -1.47113546946755 Max fold change below threshold 4 1.4983828061873 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773583_at SPBC685.06.S1 --- 1.49832982379601 --- --- --- --- 55.1211280822754 55.2518463134766 54.5115776062012 62.7560081481934 0.149657994508743 0.0952147990465164 0.0805663987994194 0.030273400247097 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC685.06 /GEN=rps001 /DEF=40S ribosomal protein S0 (p40) --- --- --- --- --- --- SPBC685.06 // |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.49832982379601 1.00237147235097 1.07304269100069 -1.01118203696979 1.13851095453856 Max fold change below threshold 4 1.49832982379601 Max fold change below threshold APAAAP No 4 0 AAAP 3 1 0 No No x = 1
1773959_at YPL159C.S1 Protein required for respiratory growth and stability of the mitochondrial genome 1.49795304629893 770.363250732422 1128.36102294922 PET20 --- --- --- 1090.3916015625 727.921081542969 812.805419921875 1166.33044433594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL159C /GEN=CDC60 /DB_XREF=GI:6325098 /SEG=NC_001148:-250906,251667 /DEF=Protein required for respiratory growth and stability of the mitochondrial genome /NOTE=Ypl159cp --- --- --- --- --- --- S0006080 // PET20 SGDID:S0006080, Chr XVI from 251667-250906, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YPL159C // cdna:known chromosome:SGD1:XVI:250906:251667:-1 gene:YPL159C // ensembl // 11 // --- GENSCAN00000017067 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 1.08665726726977 -1.49795304629893 1.07157882551871 -1.34151615483483 1.0696436423984 Max fold change below threshold 4 1.49795304629893 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776264_at SPCC569.07.S1 --- 1.49787826364001 --- --- --- --- 0.555968523025513 0.443371117115021 0.492412686347961 0.371170699596405 0.943848013877869 0.976073980331421 0.994140982627869 0.981445014476776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC569.07 /DEF=aromatic aminotransferase (predicted) --- --- --- --- --- --- SPCC569.07 // |||aromatic aminotransferase |Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -1.29699705597813 -1.25395746715112 1.44286603505037 -1.12907026654598 -1.49787826364001 Max fold change below threshold 0 1.49787826364001 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1774346_at YGR254W.S1 Enolase II, a phosphopyruvate hydratase that catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate during glycolysis and the reverse reaction during gluconeogenesis; expression is induced in response to glucose /// Enolase I, a phosphopyruvate hydratase that catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate during glycolysis and the reverse reaction during gluconeogenesis; expression is repressed in response to glucose 1.49755063774481 7985.74829101563 7071 ENO2 /// ENO1 6094 // gluconeogenesis // inferred from expression pattern /// 6096 // glycolysis // inferred from mutant phenotype 15 // phosphopyruvate hydratase complex // inferred from direct assay /// 5625 // soluble fraction // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4634 // phosphopyruvate hydratase activity // inferred from mutant phenotype 8479.65234375 10265.2333984375 5706.26318359375 5662.34765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR254W /GEN=ENO1 /DB_XREF=GI:6321693 /SEG=NC_001139:+1000931,1002244 /DEF=Enolase I, catalyzes the first common step of glycolysis and gluconeogenesis; expression is repressed in response to glucose /NOTE=Eno1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: phosphopyruvate hydratase complex [goid GO:0000015] [evidence IDA] [pmid 6282834]; go_function: phosphopyruvate hydratase activity [goid GO:0004634] [evidence IMP] [pmid 6282834]; go_process: gluconeogenesis [goid GO:0006094] [evidence TAS]; go_process: glycolysis [goid GO:0006096] [evidence TAS] --- --- --- --- --- --- S0003486 // ENO1 SGDID:S0003486, Chr VII from 1000932-1002245, Verified ORF // sgd // 11 // --- /// GENSCAN00000019536 // cdna:Genscan chromosome:SGD1:VII:1000932:1002245:1 // ensembl // 11 // --- /// GENEFINDER00000021653 // cdna:GeneFinder chromosome:SGD1:VII:1000932:1002245:1 // ensembl // 11 // --- /// YGR254W // cdna:known chromosome:SGD1:VII:1000932:1002245:1 gene:YGR254W // ensembl // 11 // --- --- No cerevisiae_gene -1.4667291207038 1.21057243649895 -1.4352804545867 -1.48602545500006 -1.49755063774481 Max fold change below threshold 4 1.49755063774481 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774225_at YCL057C-A.S1 Hypothetical protein, has similarity to proteins in S. pombe, C. elegans, D. melanogaster. 1.49732070642178 4596.66259765625 3385.42687988281 --- --- --- --- 3480.05786132813 5210.7626953125 3982.5625 3290.7958984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL057C-A /GEN=FYV5 /DB_XREF=GI:10383755 /SEG=NC_001135:-24032,24325 /DEF=Hypothetical ORF, has similarity to proteins in S. pombe, C. elegans, D. melanogaster. /NOTE=Ycl057c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0007547 // span:36-58 // numtm:1 S0007547 // YCL057C-A SGDID:S0007547, Chr III from 24325-24032, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023326 // cdna:GeneFinder chromosome:SGD1:III:24032:24325:-1 // ensembl // 11 // --- /// YCL057C-A // cdna:known chromosome:SGD1:III:24032:24325:-1 gene:YCL057C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.44968537116521 1.49732070642178 1.06742111880913 1.14439548383833 -1.05751251938186 Max fold change below threshold 4 1.49732070642178 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774330_at YJR091C.S1 Member of the Puf family of RNA-binding proteins, interacts with mRNAs encoding membrane-associated proteins; overexpression suppresses a tub2-150 mutation and causes increased sensitivity to benomyl in wild-type cells 1.49728470450043 1797.90222167969 2397.6083984375 JSN1 288 // mRNA catabolism, deadenylylation-dependent decay // inferred from genetic interaction --- 3729 // mRNA binding // inferred from sequence similarity 2322.18896484375 1689.24572753906 1906.55871582031 2473.02783203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR091C /GEN=JSN1 /DB_XREF=GI:6322550 /SEG=NC_001142:-594975,598250 /DEF=Member of the Puf family of RNA-binding proteins, interacts with mRNAs encoding membrane-associated proteins; overexpression suppresses a tub2-150 mutation and causes increased sensitivity to benomyl in wild-type cells /NOTE=Jsn1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: mRNA binding [goid GO:0003729] [evidence ISS] [pmid 11101532]; go_process: mRNA catabolism, deadenylation-dependent [goid GO:0000288] [evidence IGI] [pmid 11101532] --- --- --- --- --- --- S0003851 // JSN1 SGDID:S0003851, Chr X from 598250-594975, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024203 // cdna:Genscan chromosome:SGD1:X:594975:598232:-1 // ensembl // 11 // --- /// GENEFINDER00000024319 // cdna:GeneFinder chromosome:SGD1:X:594975:598250:-1 // ensembl // 11 // --- /// YJR091C // cdna:known chromosome:SGD1:X:594975:598250:-1 gene:YJR091C // ensembl // 11 // --- --- No cerevisiae_gene -1.49728470450043 -1.37468985535146 -1.05623363877616 -1.21800023548953 1.06495546636001 Max fold change below threshold 4 1.49728470450043 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779649_at YMR201C.S1 Protein that recognizes and binds damaged DNA during nucleotide excision repair; subunit of Nucleotide Excision Repair Factor 1 (NEF1); contains zinc finger motif; homolog of human XPA protein 1.497119485825 504.740539550781 702.438415527344 RAD14 715 // nucleotide-excision repair, DNA damage recognition // traceable author statement 110 // nucleotide excision repair factor 1 complex // traceable author statement 3684 // damaged DNA binding // traceable author statement 695.450927734375 464.526000976563 544.955078125 709.425903320313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR201C /GEN=RAD14 /DB_XREF=GI:6323857 /SEG=NC_001145:-665844,667043 /DEF=Protein that recognizes and binds damaged DNA during nucleotide excision repair; subunit of Nucleotide Excision Repair Factor 1 (NEF1); contains zinc finger motif; homolog of human XPA protein /NOTE=Rad14p; go_component: nucleotide excision repair factor 1 complex [goid GO:0000110] [evidence TAS] [pmid 10915862]; go_function: damaged DNA binding [goid GO:0003684] [evidence TAS] [pmid 10915862]; go_process: nucleotide-excision repair, DNA damage recognition [goid GO:0000715] [evidence TAS] [pmid 10915862] --- --- --- --- --- --- S0004814 // RAD14 SGDID:S0004814, Chr XIII from 667043-667017,666932-665844, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000018883 // cdna:Genscan chromosome:SGD1:XIII:665844:666587:-1 // ensembl // 11 // --- /// GENEFINDER00000021862 // cdna:GeneFinder chromosome:SGD1:XIII:665844:666587:-1 // ensembl // 11 // --- /// YMR201C // cdna:known chromosome:SGD1:XIII:665844:667043:-1 gene:YMR201C // ensembl // 11 // --- --- No cerevisiae_gene -1.42877413711295 -1.497119485825 1.23521317911778 -1.27616193636947 1.02009484066901 Max fold change below threshold 4 1.497119485825 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773745_at YNL243W.S1 Transmembrane actin-binding protein involved in membrane cytoskeleton assembly and cell polarization; adaptor protein that links actin to clathrin and endocytosis; present in the actin cortical patch of the emerging bud tip; dimer in vivo 1.49706225788082 1353.99456787109 1929.24749755859 SLA2 6887 // exocytosis // inferred from mutant phenotype /// 6897 // endocytosis // inferred from mutant phenotype /// 7015 // actin filament organization // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 7121 // bipolar bud site selection // inferred from mutant phenotype 131 // incipient bud site // inferred from direct assay /// 30479 // actin cortical patch // inferred from direct assay 30674 // protein binding, bridging // inferred from genetic interaction /// 30674 // protein binding, bridging // inferred from physical interaction 1971.01513671875 1391.40051269531 1316.58862304688 1887.47985839844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL243W /GEN=SLA2 /DB_XREF=GI:6324086 /SEG=NC_001146:+188050,190956 /DEF=Protein involved in membrane cytoskeleton assembly, required for cell polarization and endocytosis /NOTE=Sla2p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10652251]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 11302750]; go_function: protein binding, bridging [goid GO:0030674] [evidence IGI,IPI] [pmid 14704157]; go_process: actin filament organization [goid GO:0007015] [evidence IMP] [pmid 10397764]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 10652251]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 10652251]; go_process: exocytosis [goid GO:0006887] [evidence IMP] [pmid 10652251]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251] --- --- --- --- --- --- S0005187 // SLA2 SGDID:S0005187, Chr XIV from 188050-190956, Verified ORF // sgd // 11 // --- /// GENSCAN00000019845 // cdna:Genscan chromosome:SGD1:XIV:188050:190956:1 // ensembl // 11 // --- /// GENEFINDER00000020645 // cdna:GeneFinder chromosome:SGD1:XIV:188050:190956:1 // ensembl // 11 // --- /// YNL243W // cdna:known chromosome:SGD1:XIV:188050:190956:1 gene:YNL243W // ensembl // 11 // --- --- No cerevisiae_gene -1.46649648651494 -1.41656921837743 -1.33152559078332 -1.49706225788082 -1.04425757337151 Max fold change below threshold 4 1.49706225788082 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778025_at YER180C-A.S1 SCOCO like ORF 1.49691123196608 37.568717956543 31.8307151794434 SLO1 6623 // protein-vacuolar targeting // inferred from physical interaction 5737 // cytoplasm // non-traceable author statement 5083 // small GTPase regulator activity // inferred from sequence similarity 31.175666809082 43.4504203796387 31.6870155334473 32.4857635498047 0.00195312988944352 0.018554700538516 0.0676269978284836 0.00292969006113708 P P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER180C-A /GEN=SLO1 /DB_XREF=GI:28913320 /SEG=NC_001137:-550860,551117 /DEF=SCOCO like ORF /NOTE=Slo1p; go_component: cytoplasm [goid GO:0005737] [evidence NAS] [pmid 12620189]; go_function: small GTPase regulatory/interacting protein activity [goid GO:0005083] [evidence ISS] [pmid 12620189]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IPI] [pmid 12620189] --- --- --- --- --- --- S0028437 // SLO1 SGDID:S0028437, Chr V from 551117-550860, reverse complement, Verified ORF // sgd // 11 // --- /// YER180C-A // cdna:known chromosome:SGD1:V:550860:551117:-1 gene:YER180C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.49691123196608 1.39372866170679 -1.1087996892517 1.01640217441047 1.04202305435023 Max fold change below threshold 4 1.49691123196608 Max fold change below threshold PPPPAP No 2 0 PPAP 1 3 0 No No 2 < x = 3
1769467_at YBR065C.S1 Pre-mRNA splicing factor, facilitates the cooperative formation of U2/U6 helix II in association with stem II in the spliceosome, function may be regulated by Slu7p 1.49675248654061 383.768951416016 465.089141845703 ECM2 398 // nuclear mRNA splicing, via spliceosome // inferred from genetic interaction /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 422.418853759766 355.029113769531 412.5087890625 507.759429931641 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR065C /GEN=ECM2 /DB_XREF=GI:6319539 /SEG=NC_001134:-368545,369639 /DEF=Pre-mRNA splicing factor, facilitates the cooperative formation of U2/U6 helix II in association with stem II in the spliceosome, function may be regulated by Slu7p /NOTE=Ecm2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IGI] [pmid 9528778] --- --- --- --- --- --- S0000269 // ECM2 SGDID:S0000269, Chr II from 369676-368582, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021191 // cdna:Genscan chromosome:SGD1:II:368582:369676:-1 // ensembl // 11 // --- /// YBR065C // cdna:known chromosome:SGD1:II:368582:369676:-1 gene:YBR065C // ensembl // 11 // --- --- No cerevisiae_gene 1.0361401870462 -1.18981468667378 1.49675248654061 -1.0240238873935 1.2020283313879 Max fold change below threshold 4 1.49675248654061 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773371_at SPBC1289.11.S1 --- 1.49635844787764 --- --- --- --- 0.457332044839859 0.684332668781281 0.500571727752686 0.43756029009819 0.969726979732513 0.989257991313934 0.981445014476776 0.969726979732513 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1289.11 /GEN=spf38 /DEF=small nuclear ribonucleoprotein (snRNP) --- --- --- --- --- --- SPBC1289.11 // |spf38|cwf17|WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.36710480331161 1.49635844787764 1.14762506861124 1.09454767799612 -1.04518635531856 Max fold change below threshold 0 1.49635844787764 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777572_at YDR311W.S1 Subunit of TFIIH and nucleotide excision repair factor 3 complexes, required for nucleotide excision repair, target for transcriptional activators 1.49615530779747 652.654479980469 1000.38598632813 TFB1 717 // nucleotide-excision repair, DNA duplex unwinding // traceable author statement /// 6289 // nucleotide-excision repair // traceable author statement /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 7070 // negative regulation of transcription from RNA polymerase II promoter, mitotic // traceable author statement 112 // nucleotide excision repair factor 3 complex // traceable author statement /// 5675 // transcription factor TFIIH complex // traceable author statement /// 5675 // transcription factor TFIIH complex // inferred from direct assay 16251 // general RNA polymerase II transcription factor activity // traceable author statement 962.134887695313 662.237426757813 643.071533203125 1038.63708496094 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR311W /GEN=TFB1 /DB_XREF=GI:6320517 /SEG=NC_001136:+1085058,1086986 /DEF=Subunit of TFIIH and nucleotide excision repair factor 3 complexes, required for nucleotide excision repair, target for transcriptional activators /NOTE=Tfb1p; go_component: nucleotide excision repair factor 3 complex [goid GO:0000112] [evidence TAS] [pmid 10915862]; go_component: transcription factor TFIIH complex [goid GO:0005675] [evidence TAS] [pmid 9774381]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9774381]; go_process: negative regulation of transcription from Pol II promoter, mitotic [goid GO:0007070] [evidence TAS] [pmid 10384273]; go_process: nucleotide-excision repair [goid GO:0006289] [evidence TAS] [pmid 9774381]; go_process: nucleotide-excision repair, DNA duplex unwinding [goid GO:0000717] [evidence TAS] [pmid 10915862]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 10384286] --- --- --- --- --- --- S0002719 // TFB1 SGDID:S0002719, Chr IV from 1085060-1086988, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023483 // cdna:GeneFinder chromosome:SGD1:IV:1085060:1086988:1 // ensembl // 10 // --- /// GENSCAN00000025340 // cdna:Genscan chromosome:SGD1:IV:1085060:1086988:1 // ensembl // 10 // --- /// YDR311W // cdna:known chromosome:SGD1:IV:1085060:1086988:1 gene:YDR311W // ensembl // 10 // --- --- No cerevisiae_gene -1.02991699114782 -1.45285489587283 -1.05784911997557 -1.49615530779747 1.07951296459988 Max fold change below threshold 4 1.49615530779747 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772786_at YBR262C.S1 The authentic, non-tagged protein was localized to the mitochondria 1.49613337941442 1092.22448730469 1664.70446777344 --- --- 5739 // mitochondrion // inferred from direct assay --- 1586.37951660156 1124.12939453125 1060.31958007813 1743.02941894531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR262C /GEN=RGD1 /DB_XREF=GI:6319740 /SEG=NC_001134:-735677,735997 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ybr262cp --- --- --- --- --- --- S0000466 // FMP51 SGDID:S0000466, Chr II from 736035-735715, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YBR262C // cdna:known chromosome:SGD1:II:735715:736035:-1 gene:YBR262C // ensembl // 11 // --- --- No cerevisiae_gene -1.28865275239406 -1.4112072189546 1.19216811570605 -1.49613337941442 1.09874680094164 Max fold change below threshold 4 1.49613337941442 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772281_at YHL009C.S1 Basic leucine zipper (bZIP) transcription factor 1.49607489917065 204.833610534668 217.019386291504 YAP3 6357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from physical interaction 3700 // transcription factor activity // inferred from direct assay 220.841323852539 147.613815307617 262.053405761719 213.197448730469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL009C /GEN=YAP3 /DB_XREF=GI:6321778 /SEG=NC_001140:-84063,85055 /DEF=bZIP protein; transcription factor /NOTE=Yap3p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 9372930]; go_function: transcription factor activity [goid GO:0003700] [evidence IDA] [pmid 9372930]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IDA] [pmid 9372930] --- --- --- --- scop // a.2.7.Valyl-tRNA synthetase (ValRS) C-terminal domain // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Valyl-tRNA synthetase (ValRS) C-terminal domain // 1.60000002384186 --- S0001001 // YAP3 SGDID:S0001001, Chr VIII from 85055-84063, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016547 // cdna:Genscan chromosome:SGD1:VIII:84063:85055:-1 // ensembl // 11 // --- /// GENEFINDER00000020267 // cdna:GeneFinder chromosome:SGD1:VIII:84063:84746:-1 // ensembl // 11 // --- /// YHL009C // cdna:known chromosome:SGD1:VIII:84063:85055:-1 gene:YHL009C // ensembl // 11 // --- --- No cerevisiae_gene -1.17396069238506 -1.49607489917065 -1.0059571780736 1.1866139959236 -1.03585350184811 Max fold change below threshold 4 1.49607489917065 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769727_s_at YDL184C.S1 Ribosomal protein L47 of the large (60S) ribosomal subunit, identical to Rpl41Bp and has similarity to rat L41 ribosomal protein; comprised of only 25 amino acids; rpl41a rpl41b double null mutant is viable /// Ribosomal protein L47 of the large (60S) ribosomal subunit, identical to Rpl41Ap and has similarity to rat L41 ribosomal protein; comprised of only 25 amino acids; rpl41a rpl41b double null mutant is viable 1.49567194800599 116.170391082764 106.079959869385 RPL41A /// RPL41B 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 119.303321838379 130.896408081055 101.444374084473 92.8565979003906 0.00805663969367743 0.00585938012227416 0.00805663969367743 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL184C /GEN=RPL41A /DB_XREF=GI:6320017 /SEG=NC_001136:-130408,130485 /DEF=Ribosomal protein L47 of the large (60S) ribosomal subunit, identical to Rpl41Bp and has similarity to rat L41 ribosomal protein; comprised of only 25 amino acids; rpl41a rpl41b double null mutant is viable /NOTE=Rpl41ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0002293 // RPL41B SGDID:S0002293, Chr IV from 221801-221724, reverse complement, Verified ORF // sgd // 11 // --- /// S0002343 // RPL41A SGDID:S0002343, Chr IV from 130485-130408, reverse complement, Verified ORF // sgd // 11 // --- /// YDL184C // cdna:known chromosome:SGD1:IV:130408:130485:-1 gene:YDL184C // ensembl // 11 // --- /// YDL133C-A // cdna:known chromosome:SGD1:IV:221724:221801:-1 gene:YDL133C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.19658854695416 1.09717320577528 -1.49567194800599 -1.1760467045618 -1.28481254467624 Max fold change below threshold 4 1.49567194800599 Max fold change below threshold PPPPPP No 3 0 PPPP 0 4 0 No No 3 < x
1773482_at YJL044C.S1 GTPase-activating protein (GAP) for the yeast Rab family member, Ypt6p; involved in vesicle mediated protein transport 1.4956427407701 236.931999206543 346.641876220703 GYP6 6886 // intracellular protein transport // inferred from sequence similarity 5768 // endosome // inferred from direct assay /// 30136 // clathrin-coated vesicle // inferred from direct assay 5096 // GTPase activator activity // inferred from direct assay 320.194885253906 225.149063110352 248.714935302734 373.0888671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL044C /GEN=GYP6 /DB_XREF=GI:6322417 /SEG=NC_001142:-358216,359592 /DEF=GTPase-activating protein (GAP) for the yeast Rab family member, Ypt6p; involved in vesicle mediated protein transport /NOTE=Gyp6p; go_component: clathrin-coated vesicle [goid GO:0030136] [evidence IDA] [pmid 14562095]; go_function: GTPase activator activity [goid GO:0005096] [evidence IDA] [pmid 8441469]; go_process: intracellular protein transport [goid GO:0006886] [evidence ISS] [pmid 8441469] --- --- --- --- --- --- S0003580 // GYP6 SGDID:S0003580, Chr X from 359592-358216, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024407 // cdna:GeneFinder chromosome:SGD1:X:358216:359592:-1 // ensembl // 11 // --- /// YJL044C // cdna:known chromosome:SGD1:X:358216:359592:-1 gene:YJL044C // ensembl // 11 // --- --- No cerevisiae_gene 1.01555106076488 -1.42214620318882 1.4956427407701 -1.28739709524949 1.16519308823953 Max fold change below threshold 4 1.4956427407701 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779710_at YDR482C.S1 Component of a complex containing Cef1p, putatively involved in pre-mRNA splicing; may bind RNA; has similarity to S. pombe Cwf21p 1.49556361207842 324.631744384766 411.141006469727 CWC21 --- 5681 // spliceosome complex // inferred from physical interaction --- 390.362915039063 261.013916015625 388.249572753906 431.919097900391 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR482C /GEN=CWC21 /DB_XREF=GI:6320690 /SEG=NC_001136:-1420419,1420826 /DEF=Component of a complex containing Cef1p, putatively involved in pre-mRNA splicing; may bind RNA; has similarity to S. pombe Cwf21p /NOTE=Cwc21p; go_component: spliceosome complex [goid GO:0005681] [evidence IPI] [pmid 11884590]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002890 // CWC21 SGDID:S0002890, Chr IV from 1420828-1420421, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025477 // cdna:Genscan chromosome:SGD1:IV:1420421:1420828:-1 // ensembl // 11 // --- /// YDR482C // cdna:known chromosome:SGD1:IV:1420421:1420828:-1 gene:YDR482C // ensembl // 11 // --- --- No cerevisiae_gene 1.29611390830035 -1.49556361207842 1.10211656070495 -1.00544325720738 1.10645525294627 Max fold change below threshold 4 1.49556361207842 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776617_at YJR005W.S1 Beta-adaptin, large subunit of the clathrin associated protein complex (AP-2); involved in vesicle mediated transport; similar to mammalian beta-chain of the clathrin associated protein complex 1.49536989735813 1123.11633300781 1081.24523925781 APL1 16192 // vesicle-mediated transport // inferred from sequence similarity /// 16192 // vesicle-mediated transport // traceable author statement 30122 // AP-2 adaptor complex // inferred from sequence similarity --- 1071.07958984375 1157.72937011719 1088.50329589844 1091.41088867188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR005W /GEN=APL1 /DB_XREF=GI:6322464 /SEG=NC_001142:+445837,447939 /DEF=beta-adaptin, large subunit of the clathrin-associated protein complex /NOTE=Apl1p; go_component: AP-2 adaptor complex [goid GO:0030122] [evidence ISS] [pmid 10564262]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence ISS] [pmid 2122239] --- --- --- --- --- --- S0003765 // APL1 SGDID:S0003765, Chr X from 445837-447939, Verified ORF // sgd // 11 // --- /// GENSCAN00000024137 // cdna:Genscan chromosome:SGD1:X:445837:447939:1 // ensembl // 11 // --- /// YJR005W // cdna:known chromosome:SGD1:X:445837:447939:1 gene:YJR005W // ensembl // 11 // --- --- No cerevisiae_gene -1.49536989735813 1.08089947852155 -1.0831138948621 1.01626742421376 1.01898206167022 Max fold change below threshold 4 1.49536989735813 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771934_at YOR365C.S1 Hypothetical protein 1.49523468564834 80.3300800323486 61.9966259002686 --- --- --- --- 66.4682159423828 99.3855819702148 61.2745780944824 57.5250358581543 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR365C /GEN=PIP2 /DB_XREF=GI:6324942 /SEG=NC_001147:-1023457,1025568 /DEF=Hypothetical ORF /NOTE=Yor365cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005892 // span:202-224,237-259,374-396,416-438,453-475,572-594,604-626 // numtm:7 S0005892 // YOR365C SGDID:S0005892, Chr XV from 1025568-1023457, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YOR365C // cdna:known chromosome:SGD1:XV:1023457:1025568:-1 gene:YOR365C // ensembl // 11 // --- YOR364W // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene 1.42308980521623 1.49523468564834 -1.22918861636597 -1.08476007521247 -1.15546587587152 Max fold change below threshold 4 1.49523468564834 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775211_at YMR240C.S1 Protein required for assembly of U2 snRNP into the spliceosome, forms a complex with Hsh49p and Hsh155p 1.49523087432521 662.345825195313 774.706726074219 CUS1 245 // spliceosome assembly // inferred from direct assay 5686 // snRNP U2 // inferred from direct assay 3723 // RNA binding // inferred from direct assay /// 5515 // protein binding // inferred from direct assay 645.453125 584.536010742188 740.155639648438 903.960327148438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR240C /GEN=CUS1 /DB_XREF=GI:6323896 /SEG=NC_001145:-749929,751239 /DEF=Protein required for assembly of U2 snRNP into the spliceosome, forms a complex with Hsh49p and Hsh155p /NOTE=Cus1p; go_component: snRNP U2 [goid GO:0005686] [evidence IDA] [pmid 11804584]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 10688664]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 10688664]; go_process: spliceosome assembly [goid GO:0000245] [evidence IDA] [pmid 8566755] --- --- --- --- --- --- S0004853 // CUS1 SGDID:S0004853, Chr XIII from 751239-749929, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018917 // cdna:Genscan chromosome:SGD1:XIII:749929:751239:-1 // ensembl // 11 // --- /// GENEFINDER00000021846 // cdna:GeneFinder chromosome:SGD1:XIII:749929:751239:-1 // ensembl // 11 // --- /// YMR240C // cdna:known chromosome:SGD1:XIII:749929:751239:-1 gene:YMR240C // ensembl // 11 // --- --- No cerevisiae_gene 1.49523087432521 -1.10421447633391 1.22970081428986 1.14672252868624 1.40050499739766 Max fold change below threshold 4 1.49523087432521 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776335_at YLR100W.S1 3-keto sterol reductase, catalyzes the last of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis; mutants are sterol auxotrophs 1.49519584898937 1612.43218994141 2224.80517578125 ERG27 6696 // ergosterol biosynthesis // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // inferred from direct assay 253 // 3-keto sterol reductase activity // inferred from mutant phenotype 2214.740234375 1481.23754882813 1743.62683105469 2234.8701171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR100W /GEN=ERG27 /DB_XREF=GI:6323129 /SEG=NC_001144:+341811,342854 /DEF=3-keto sterol reductase, catalyzes the last of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis; mutants are sterol auxotrophs /NOTE=Erg27p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11279045]; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 12119386]; go_function: 3-keto sterol reductase activity [goid GO:0000253] [evidence IMP] [pmid 10535978]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence IMP] [pmid 10535978] --- --- --- --- --- --- S0004090 // ERG27 SGDID:S0004090, Chr XII from 341811-342854, Verified ORF // sgd // 11 // --- /// GENSCAN00000017898 // cdna:Genscan chromosome:SGD1:XII:341811:342854:1 // ensembl // 11 // --- /// GENEFINDER00000024775 // cdna:GeneFinder chromosome:SGD1:XII:341811:342854:1 // ensembl // 11 // --- /// YLR100W // cdna:known chromosome:SGD1:XII:341811:342854:1 gene:YLR100W // ensembl // 11 // --- YLR101C // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene 1.00968795278792 -1.49519584898937 -1.09569366345547 -1.27019164590129 1.00908904913545 Max fold change below threshold 4 1.49519584898937 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775083_at YDR441C.S1 Apparent pseudogene, not transcribed or translated under normal conditions; encodes a protein with similarity to adenine phosphoribosyltransferase, but artificially expressed protein exhibits no enzymatic activity 1.49477979316124 917.215301513672 1178.85052490234 APT2 --- 5737 // cytoplasm // inferred from direct assay 3999 // adenine phosphoribosyltransferase activity // inferred from direct assay 1056.16784667969 706.570861816406 1127.85974121094 1301.533203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR441C /GEN=APT2 /DB_XREF=GI:6320649 /SEG=NC_001136:-1344505,1345050 /DEF=Apparent pseudogene, not transcribed or translated under normal conditions; encodes a protein with similarity to adenine phosphoribosyltransferase, but artificially expressed protein exhibits no enzymatic activity /NOTE=Apt2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: adenine phosphoribosyltransferase activity [goid GO:0003999] [evidence IDA] [pmid 9864350]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002849 // APT2 SGDID:S0002849, Chr IV from 1345052-1344507, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023530 // cdna:GeneFinder chromosome:SGD1:IV:1344507:1345052:-1 // ensembl // 11 // --- /// YDR441C // cdna:known chromosome:SGD1:IV:1344507:1345052:-1 gene:YDR441C // ensembl // 11 // --- --- No cerevisiae_gene 1.48117416676847 -1.49477979316124 1.02841763649563 1.06787926252123 1.23231663150576 Max fold change below threshold 4 1.49477979316124 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775984_at YOR317W.S1 Long chain fatty acyl-CoA synthetase with a preference for C12:0-C16:0 fatty acids; involved in the activation of imported fatty acids; not required for growth on nonfermentable carbon sources; essential for stationary phase 1.49381803059579 5877.52758789063 4423.30322265625 FAA1 6499 // N-terminal protein myristoylation // inferred from genetic interaction /// 6499 // N-terminal protein myristoylation // inferred from mutant phenotype /// 6629 // lipid metabolism // inferred from genetic interaction /// 6629 // lipid metabolism // inferred from mutant phenotype /// 6869 // lipid transport // inferred from genetic interaction /// 6869 // lipid transport // inferred from physical interaction 5739 // mitochondrion // inferred from direct assay /// 5811 // lipid particle // inferred from direct assay 4467 // long-chain-fatty-acid-CoA ligase activity // inferred from direct assay 4856.25830078125 7254.3662109375 4500.68896484375 3990.34814453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR317W /GEN=FAA1 /DB_XREF=GI:6324893 /SEG=NC_001147:+909338,911440 /DEF=Long chain fatty acyl-CoA synthetase with a preference for C12:0-C16:0 fatty acids; involved in the activation of imported fatty acids /NOTE=Faa1p; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 10515935]; go_function: long-chain-fatty-acid-CoA ligase activity [goid GO:0004467] [evidence IDA] [pmid 8206942]; go_process: N-terminal protein myristoylation [goid GO:0006499] [evidence IGI,IMP] [pmid 7962057]; go_process: lipid metabolism [goid GO:0006629] [evidence IGI,IMP] [pmid 7962057]; go_process: lipid transport [goid GO:0006869] [evidence IGI,IPI] [pmid 12601005] --- --- --- ec // AC2L_HUMAN // (Q9NUB1) Acetyl-coenzyme A synthetase 2-like, mitochondrial precursor (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acetyl-CoA synthetase 2) // 9.0E-55 --- --- S0005844 // FAA1 SGDID:S0005844, Chr XV from 909338-911440, Verified ORF // sgd // 10 // --- /// M96371 // S.cerevisiae long-chain fatty acyl-CoA synthetase (FAA1) mRNA sequence. // gb // 10 // --- /// GENSCAN00000017772 // cdna:Genscan chromosome:SGD1:XV:909338:911440:1 // ensembl // 10 // --- /// GENEFINDER00000022647 // cdna:GeneFinder chromosome:SGD1:XV:909338:911440:1 // ensembl // 10 // --- /// YOR317W // cdna:known chromosome:SGD1:XV:909338:911440:1 gene:YOR317W // ensembl // 10 // --- --- No cerevisiae_gene -1.21802747635832 1.49381803059579 -1.10367914614158 -1.07900331231839 -1.21700115500867 Max fold change below threshold 4 1.49381803059579 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775643_at YBR236C.S1 Methyltransferase, catalyzes the transfer of a methyl group from S-adenosylmethionine to the GpppN terminus of capped mRNA 1.49367047678728 709.157958984375 818.802825927734 ABD1 6370 // mRNA capping // inferred from direct assay 5634 // nucleus // inferred from physical interaction /// 16591 // DNA-directed RNA polymerase II, holoenzyme // inferred from physical interaction 4482 // mRNA (guanine-N7-)-methyltransferase activity // inferred from sequence similarity /// 4482 // mRNA (guanine-N7-)-methyltransferase activity // inferred from direct assay 755.636352539063 505.892272949219 912.423645019531 881.969299316406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR236C /GEN=ABD1 /DB_XREF=GI:6319713 /SEG=NC_001134:-690340,691650 /DEF=Methyltransferase, catalyzes the transfer of a methyl group from S-adenosylmethionine to the GpppN terminus of capped mRNA /NOTE=Abd1p; go_component: DNA-directed RNA polymerase II, holoenzyme [goid GO:0016591] [evidence IPI] [pmid 11018011]; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 11018011]; go_function: mRNA (guanine-N7-)-methyltransferase activity [goid GO:0004482] [evidence IDA,ISS] [pmid 7623811]; go_process: mRNA capping [goid GO:0006370] [evidence IDA] [pmid 7623811] --- --- --- ec // ABD1_YEAST // (P32783) mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56) // 0.0 --- --- S0000440 // ABD1 SGDID:S0000440, Chr II from 691688-690378, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021327 // cdna:Genscan chromosome:SGD1:II:690378:691688:-1 // ensembl // 11 // --- /// GENEFINDER00000022357 // cdna:GeneFinder chromosome:SGD1:II:690378:691688:-1 // ensembl // 11 // --- /// YBR236C // cdna:known chromosome:SGD1:II:690378:691688:-1 gene:YBR236C // ensembl // 11 // --- --- No cerevisiae_gene 1.21970613745367 -1.49367047678728 1.35181019981186 1.20749040454928 1.1671874921751 Max fold change below threshold 4 1.49367047678728 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775665_at SPBC21B10.05c.S1 --- 1.49340442364454 --- --- --- --- 12.1534099578857 14.5104198455811 11.6773452758789 8.9101448059082 0.274170011281967 0.567627012729645 0.601073980331421 0.1884765625 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC21B10.05c /GEN=pop3 /DEF=WD repeat protein --- --- --- --- --- --- SPBC21B10.05c // |pop3|wat1|WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.07447280845901 1.19393815364271 -1.49340442364454 -1.04076822863072 -1.36399690719134 Max fold change below threshold 4 1.49340442364454 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1777561_at YGR243W.S1 The authentic, non-tagged protein was localized to mitochondria 1.49280478878614 8912.80541992188 7217.96069335938 --- --- 5739 // mitochondrion // inferred from direct assay --- 8644.8857421875 11751.572265625 6074.03857421875 5791.03564453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR243W /GEN=YAP1802 /DB_XREF=GI:6321682 /SEG=NC_001139:+977340,977780 /DEF=The authentic, non-tagged protein was localized to mitochondria /NOTE=Ygr243wp --- --- --- --- --- --- S0003475 // FMP43 SGDID:S0003475, Chr VII from 977341-977781, Uncharacterized ORF // sgd // 11 // --- /// YGR243W // cdna:known chromosome:SGD1:VII:977341:977781:1 gene:YGR243W // ensembl // 11 // --- --- No cerevisiae_gene -1.3565974950869 1.35936698483783 -1.31544845561509 -1.42325170256256 -1.49280478878614 Max fold change below threshold 4 1.49280478878614 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772832_at YFR009W.S1 Positive regulator of the Gcn2p kinase activity, forms a complex with Gcn1p; proposed to stimulate Gcn2p activation by an uncharged tRNA 1.49267565796167 2014.35931396484 1557.44030761719 GCN20 6448 // regulation of translational elongation // inferred from mutant phenotype /// 6448 // regulation of translational elongation // inferred from physical interaction 5829 // cytosol // inferred from physical interaction /// 5830 // cytosolic ribosome (sensu Eukaryota) // inferred from direct assay 16887 // ATPase activity // inferred from sequence similarity 1463.90869140625 1843.57775878906 2185.14086914063 1650.97192382813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR009W /GEN=GCN20 /DB_XREF=GI:14318531 /SEG=NC_001138:+162482,164740 /DEF=Positive regulator of the Gcn2p kinase activity, forms a complex with Gcn1p; proposed to stimulate Gcn2p activation by an uncharged tRNA /NOTE=Gcn20p; go_component: cytosol [goid GO:0005829] [evidence IPI] [pmid 9234705]; go_component: cytosolic ribosome (sensu Eukarya) [goid GO:0005830] [evidence IDA] [pmid 9234705]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: regulation of translational elongation [goid GO:0006448] [evidence IMP,IPI] [pmid 9234705] --- --- --- --- --- --- S0001905 // GCN20 SGDID:S0001905, Chr VI from 162482-164740, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018578 // cdna:GeneFinder chromosome:SGD1:VI:162482:164740:1 // ensembl // 11 // --- /// GENSCAN00000023251 // cdna:Genscan chromosome:SGD1:VI:162482:164740:1 // ensembl // 11 // --- /// YFR009W // cdna:known chromosome:SGD1:VI:162482:164740:1 gene:YFR009W // ensembl // 11 // --- --- No cerevisiae_gene 1.15878452412123 1.25935297031272 -1.04814531958524 1.49267565796167 1.12778340173811 Max fold change below threshold 4 1.49267565796167 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771157_at YDR524C-B.S1 --- 1.49249478182089 7576.15356445313 6329.87548828125 --- --- --- --- 7580.6025390625 9744.2412109375 5408.06591796875 5079.1484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR524C-B /GEN=AGE1 /DB_XREF=GI:33438785 /SEG=NC_001136:-1489586,1489786 /DEF=Ydr524c-bp /NOTE=go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028739 // span:43-65 // numtm:1 S0028739 // YDR524C-B SGDID:S0028739, Chr IV from 1489788-1489588, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023553 // cdna:GeneFinder chromosome:SGD1:IV:1489588:1489788:-1 // ensembl // 11 // --- /// GENSCAN00000025508 // cdna:Genscan chromosome:SGD1:IV:1489588:1489788:-1 // ensembl // 11 // --- /// YDR524C-B // cdna:known chromosome:SGD1:IV:1489588:1489788:-1 gene:YDR524C-B // ensembl // 11 // --- --- No cerevisiae_gene -1.4076900220596 1.28541776998937 -1.1477266065416 -1.40172154963484 -1.49249478182089 Max fold change below threshold 4 1.49249478182089 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778061_at YGR021W.S1 Hypothetical protein 1.49219643832922 481.797164916992 397.015655517578 --- --- 5739 // mitochondrion // inferred from direct assay --- 370.498107910156 459.066741943359 504.527587890625 423.533203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR021W /GEN=VMA7 /DB_XREF=GI:6321458 /SEG=NC_001139:+527634,528506 /DEF=Hypothetical ORF /NOTE=Ygr021wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003253 // YGR021W SGDID:S0003253, Chr VII from 527636-528508, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019356 // cdna:Genscan chromosome:SGD1:VII:527636:528508:1 // ensembl // 11 // --- /// GENEFINDER00000021629 // cdna:GeneFinder chromosome:SGD1:VII:527810:528508:1 // ensembl // 11 // --- /// YGR021W // cdna:known chromosome:SGD1:VII:527636:528508:1 gene:YGR021W // ensembl // 11 // --- --- No cerevisiae_gene -1.40497096952225 1.23905286462267 1.49219643832922 1.36175482983295 1.14314538747308 Max fold change below threshold 4 1.49219643832922 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779720_at YOR119C.S1 Essential serine kinase involved in cell cycle progression and processing of the 20S pre-rRNA into mature 18S rRNA 1.49210262250367 745.700561523438 558.072326660156 RIO1 84 // S phase of mitotic cell cycle // inferred from direct assay /// 7096 // regulation of exit from mitosis // inferred from direct assay /// 30490 // processing of 20S pre-rRNA // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4672 // protein kinase activity // inferred from direct assay 520.300415039063 715.059509277344 776.341613769531 595.84423828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR119C /GEN=RIO1 /DB_XREF=GI:6324693 /SEG=NC_001147:-548792,550246 /DEF=Essential in yeast; plays a role in cell cycle progression. /NOTE=Rio1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11483523]; go_function: protein kinase activity [goid GO:0004672] [evidence IDA] [pmid 11972772]; go_process: S phase of mitotic cell cycle [goid GO:0000084] [evidence IDA] [pmid 11972772]; go_process: processing of 20S pre-rRNA [goid GO:0030490] [evidence IDA] [pmid 11483523]; go_process: regulation of exit from mitosis [goid GO:0007096] [evidence IDA] [pmid 11972772] --- --- --- --- --- --- S0005645 // RIO1 SGDID:S0005645, Chr XV from 550246-548792, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022898 // cdna:GeneFinder chromosome:SGD1:XV:548720:550246:-1 // ensembl // 11 // --- /// YOR119C // cdna:known chromosome:SGD1:XV:548792:550246:-1 gene:YOR119C // ensembl // 11 // --- --- No cerevisiae_gene 1.01548999003121 1.37432046680889 1.22409503692958 1.49210262250367 1.14519270225167 Max fold change below threshold 4 1.49210262250367 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777481_at YNL227C.S1 Protein that contains a 70 amino acid J-domain, may function as a co-chaperone to recruit Hsp70-like activity to specific sites; mutation causes defects in fluid-phase endocytosis 1.49188763368725 191.554534912109 268.047576904297 JJJ1 6897 // endocytosis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 260.538452148438 208.472290039063 174.636779785156 275.556701660156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL227C /GEN=JJJ1 /DB_XREF=GI:6324103 /SEG=NC_001146:-220658,222430 /DEF=Protein that may function as a cochaperone, as suggested by the presence of a DnaJ-like domain /NOTE=Jjj1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 11378903] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 4.00000012549758E-22 --- S0005171 // JJJ1 SGDID:S0005171, Chr XIV from 222430-220658, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019858 // cdna:Genscan chromosome:SGD1:XIV:220658:222430:-1 // ensembl // 11 // --- /// YNL227C // cdna:known chromosome:SGD1:XIV:220658:222430:-1 gene:YNL227C // ensembl // 11 // --- GENEFINDER00000020540 // ensembl // 7 // Cross Hyb Matching Probes /// YNL228W // ensembl // 11 // Negative Strand Matching Probes No cerevisiae_gene -1.42207367018171 -1.24975099616174 -1.15612325970239 -1.49188763368725 1.05764312095921 Max fold change below threshold 4 1.49188763368725 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769451_at YHR002W.S1 Mitochondrial carrier protein involved in the accumulation of CoA in the mitochondrial matrix; homolog of human Graves disease protein; does not encode an isozyme of Leu4p, as first hypothesized 1.4918471108059 1316.66888427734 1108.38696289063 LEU5 15880 // coenzyme A transport // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay 15228 // coenzyme A transporter activity // inferred from sequence similarity /// 15228 // coenzyme A transporter activity // inferred from mutant phenotype 1049.47009277344 1388.818359375 1244.51940917969 1167.30383300781 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR002W /GEN=LEU5 /DB_XREF=GI:6321789 /SEG=NC_001140:+108806,109879 /DEF=mitochondrial carrier protein, involved in the accumulation of CoA in the mitochondrial matrix; homologue of human Graves disease protein; LEU5 does not encode an alpha-IPM synthase, as was first hypothesized. /NOTE=Leu5p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 11158296]; go_function: coenzyme A transporter activity [goid GO:0015228] [evidence IMP,ISS] [pmid 11158296]; go_process: coenzyme A transport [goid GO:0015880] [evidence IMP] [pmid 11158296] --- --- --- --- --- S0001044 // span:326-348 // numtm:1 S0001044 // LEU5 SGDID:S0001044, Chr VIII from 108806-109879, Verified ORF // sgd // 11 // --- /// YHR002W // cdna:known chromosome:SGD1:VIII:108806:109879:1 gene:YHR002W // ensembl // 11 // --- --- No cerevisiae_gene -1.12414923968573 1.3233520125426 1.4918471108059 1.18585504984786 1.11227927412679 Max fold change below threshold 4 1.4918471108059 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777559_at YKL128C.S1 Putative phosphomutase, contains a region homologous to the active site of phsophomutases; overexpression of the gene suppresses the histidine auxotrophy of an ade3 ade16 ade17 triple mutant and the temperature sensitivity of a tps2 mutant 1.49178521877104 344.599868774414 519.591201782227 PMU1 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 500.360687255859 353.7890625 335.410675048828 538.821716308594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL128C /GEN=PMU1 /DB_XREF=GI:6322721 /SEG=NC_001143:-200530,201417 /DEF=Phospho MUtase homolog. Small region homologous to active site of phospho-mutases, these move phosphates via a phospho-histidine intermediate. Homologs include: Sc GPM1, bact. Pgm, Hs Bpgm & rat fructose-2,6-bisphosphatase /NOTE=Pmu1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001611 // PMU1 SGDID:S0001611, Chr XI from 201417-200530, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018321 // cdna:Genscan chromosome:SGD1:XI:200530:201195:-1 // ensembl // 11 // --- /// GENEFINDER00000023002 // cdna:GeneFinder chromosome:SGD1:XI:200530:201417:-1 // ensembl // 11 // --- /// YKL128C // cdna:known chromosome:SGD1:XI:200530:201417:-1 gene:YKL128C // ensembl // 11 // --- --- No cerevisiae_gene 1.43319305976725 -1.41429100074528 1.1185025889832 -1.49178521877104 1.0768666084933 Max fold change below threshold 4 1.49178521877104 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776297_at YBR211C.S1 Essential kinetochore protein associated with microtubules and spindle pole bodies, subunit of the COMA complex 1.49169137812016 354.029937744141 445.534210205078 AME1 8608 // attachment of spindle microtubules to kinetochore // inferred from direct assay /// 8608 // attachment of spindle microtubules to kinetochore // inferred from physical interaction 776 // kinetochore // inferred from direct assay /// 817 // COMA complex // inferred from direct assay /// 5816 // spindle pole body // non-traceable author statement --- 438.606384277344 414.026947021484 294.032928466797 452.462036132813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR211C /GEN=AME1 /DB_XREF=GI:6319688 /SEG=NC_001134:-646115,647089 /DEF=associated with microtubules and essential /NOTE=Ame1p; go_component: COMA complex [goid GO:0000817] [evidence IDA] [pmid 14633972]; go_component: kinetochore [goid GO:0000776] [evidence IDA] [pmid 14633972]; go_component: spindle pole body [goid GO:0005816] [evidence NAS] [pmid 8990184]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: microtubule/kinetochore interaction [goid GO:0008608] [evidence IDA,IPI] [pmid 14633972] --- --- --- --- --- --- S0000415 // AME1 SGDID:S0000415, Chr II from 647127-646153, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021308 // cdna:Genscan chromosome:SGD1:II:646153:647127:-1 // ensembl // 11 // --- /// YBR211C // cdna:known chromosome:SGD1:II:646153:647127:-1 gene:YBR211C // ensembl // 11 // --- GENEFINDER00000022361 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 1.32746568492319 -1.05936675724294 -1.02529184489346 -1.49169137812016 1.0315901736777 Max fold change below threshold 4 1.49169137812016 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771557_at YIR031C.S1 Malate synthase, role in allantoin degradation unknown; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation 1.49096372990288 221.811378479004 287.601013183594 DAL7 256 // allantoin catabolism // traceable author statement 5737 // cytoplasm // inferred from direct assay 4474 // malate synthase activity // traceable author statement 270.227508544922 223.456619262695 220.166137695313 304.974517822266 0.000244141003349796 0.00292969006113708 0.000732421875 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR031C /GEN=DAL7 /DB_XREF=GI:6322222 /SEG=NC_001141:-413012,414676 /DEF=Malate synthase, role in allantoin degradation unknown; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation /NOTE=Dal7p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10077615]; go_function: malate synthase activity [goid GO:0004474] [evidence TAS]; go_process: allantoin catabolism [goid GO:0000256] [evidence TAS] --- --- --- --- --- --- S0001470 // DAL7 SGDID:S0001470, Chr IX from 414676-413012, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016499 // cdna:Genscan chromosome:SGD1:IX:413012:414676:-1 // ensembl // 11 // --- /// GENEFINDER00000019049 // cdna:GeneFinder chromosome:SGD1:IX:413012:414676:-1 // ensembl // 11 // --- /// YIR031C // cdna:known chromosome:SGD1:IX:413012:414676:-1 gene:YIR031C // ensembl // 11 // --- YIR030W-A // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene -1.41752384227264 -1.20930634964652 1.49096372990288 -1.22737997483922 1.12858427872293 Max fold change below threshold 4 1.49096372990288 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779962_at YMR139W.S1 Protein kinase required for signal transduction during entry into meiosis; promotes the formation of the Ime1p-Ume6p complex by phosphorylating Ime1p and Ume6p; shares similarity with mammalian glycogen synthase kinase 3-beta 1.4907841994525 2039.75677490234 2112.48840332031 RIM11 6468 // protein amino acid phosphorylation // inferred from genetic interaction /// 6468 // protein amino acid phosphorylation // inferred from sequence similarity /// 6508 // proteolysis and peptidolysis // inferred from genetic interaction /// 6950 // response to stress // inferred from genetic interaction /// 6950 // response to stress // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4674 // protein serine/threonine kinase activity // inferred from direct assay /// 4696 // glycogen synthase kinase 3 activity // inferred from sequence similarity 2169.55615234375 1820.44274902344 2259.07080078125 2055.42065429688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR139W /GEN=RIM11 /DB_XREF=GI:6323788 /SEG=NC_001145:+546124,547236 /DEF=Required for Ime1p phosphorylation, association of the Ime1p-Ume6p meiotic activator, early meiotic gene expression, and sporulation /NOTE=Rim11p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: glycogen synthase kinase 3 activity [goid GO:0004696] [evidence IGI,ISS] [pmid 10958669]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IGI,ISS] [pmid 10958669]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence IGI] [pmid 10958669]; go_process: response to stress [goid GO:0006950] [evidence IGI,IMP] [pmid 12529445]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 10679022] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 3.0E-74 /// hanks // 3.1.7 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; PCTAIRE1 // 3.0E-73 --- --- S0004747 // RIM11 SGDID:S0004747, Chr XIII from 546124-547236, Verified ORF // sgd // 11 // --- /// GENSCAN00000018830 // cdna:Genscan chromosome:SGD1:XIII:546124:547236:1 // ensembl // 11 // --- /// YMR139W // cdna:known chromosome:SGD1:XIII:546124:547236:1 gene:YMR139W // ensembl // 11 // --- --- No cerevisiae_gene -1.4907841994525 -1.19177389868898 1.31580750220953 1.04125942918822 -1.05552902166682 Max fold change below threshold 4 1.4907841994525 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775389_at YNL027W.S1 Transcription factor that activates transcription of genes involved in stress response; nuclear localization is positively regulated by calcineurin-mediated dephosphorylation 1.49047011959304 667.255493164063 640.564544677734 CRZ1 6355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 19722 // calcium-mediated signaling // inferred from genetic interaction /// 19722 // calcium-mediated signaling // inferred from mutant phenotype /// 19722 // calcium-mediated signaling // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3700 // transcription factor activity // inferred from direct assay /// 3700 // transcription factor activity // inferred from sequence similarity /// 3700 // transcription factor activity // inferred from physical interaction 588.048767089844 458.041870117188 876.469116210938 693.080322265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL027W /GEN=CRZ1 /DB_XREF=GI:6324301 /SEG=NC_001146:+579578,581614 /DEF=Transcription factor that activates transcription of genes involved in stress response; nuclear localization is positively regulated by calcineurin-mediated dephosphorylation /NOTE=Crz1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10197980]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10197980]; go_function: transcription factor activity [goid GO:0003700] [evidence IDA,IPI,ISS] [pmid 9407035]; go_process: calcium-mediated signaling [goid GO:0019722] [evidence IGI,IMP,IPI] [pmid 9407035]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence IMP] [pmid 9407035] --- --- --- --- --- --- S0004972 // CRZ1 SGDID:S0004972, Chr XIV from 579579-581615, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020525 // cdna:GeneFinder chromosome:SGD1:XIV:579765:581615:1 // ensembl // 11 // --- /// GENSCAN00000020015 // cdna:Genscan chromosome:SGD1:XIV:580281:581615:1 // ensembl // 11 // --- /// YNL027W // cdna:known chromosome:SGD1:XIV:579579:581615:1 gene:YNL027W // ensembl // 11 // --- --- No cerevisiae_gene -1.1666870608428 -1.28383190588973 1.29627547240978 1.49047011959304 1.17861028039488 Max fold change below threshold 4 1.49047011959304 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776884_at YPR063C.S1 Hypothetical protein 1.49037579236012 1540.625 1754.599609375 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 1761.22326660156 1559.09619140625 1522.15380859375 1747.97595214844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR063C /GEN=FCY1 /DB_XREF=GI:6325320 /SEG=NC_001148:-677807,678315 /DEF=Hypothetical ORF /NOTE=Ypr063cp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006267 // YPR063C SGDID:S0006267, Chr XVI from 678317-678277,678190-677809, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YPR063C // cdna:known chromosome:SGD1:XVI:677809:678317:-1 gene:YPR063C // ensembl // 11 // --- GENSCAN00000017233 // ensembl // 7 // Cross Hyb Matching Probes /// GENEFINDER00000020949 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 1.49037579236012 -1.12964374892931 -1.20725189169397 -1.15705998740605 -1.00757865944142 Max fold change below threshold 4 1.49037579236012 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771551_at YDR520C.S1 Hypothetical protein 1.49021197396476 339.852615356445 538.971740722656 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 494.902770996094 332.102264404297 347.602966308594 583.040710449219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR520C /GEN=FPR2 /DB_XREF=GI:6320729 /SEG=NC_001136:-1481073,1483391 /DEF=Hypothetical ORF /NOTE=Ydr520cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002928 // YDR520C SGDID:S0002928, Chr IV from 1483393-1481075, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023523 // cdna:GeneFinder chromosome:SGD1:IV:1481075:1483342:-1 // ensembl // 11 // --- /// GENSCAN00000025506 // cdna:Genscan chromosome:SGD1:IV:1481075:1482913:-1 // ensembl // 11 // --- /// YDR520C // cdna:known chromosome:SGD1:IV:1481075:1483393:-1 gene:YDR520C // ensembl // 11 // --- --- No cerevisiae_gene -1.38172234944809 -1.49021197396476 1.23401899762557 -1.42375876780272 1.1780914244544 Max fold change below threshold 4 1.49021197396476 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775388_at YJL052W.S1 Glyceraldehyde-3-phosphate dehydrogenase, isozyme 1, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall 1.48997485049942 9724.28662109375 7276.05639648438 TDH1 6094 // gluconeogenesis // inferred from expression pattern /// 6096 // glycolysis // inferred from expression pattern 5737 // cytoplasm // inferred from direct assay /// 5811 // lipid particle // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay 4365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // inferred from direct assay 8454.908203125 12597.6005859375 6850.97265625 6097.20458984375 0.00585938012227416 0.00585938012227416 0.00805663969367743 0.00805663969367743 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL052W /GEN=TDH1 /DB_XREF=GI:6322409 /SEG=NC_001142:+338187,339185 /DEF=Glyceraldehyde-3-phosphate dehydrogenase 1 /NOTE=Tdh1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 11158358]; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 10515935]; go_function: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity [goid GO:0004365] [evidence IDA] [pmid 3905788]; go_process: gluconeogenesis [goid GO:0006094] [evidence TAS]; go_process: glycolysis [goid GO:0006096] [evidence TAS] --- --- --- --- --- --- S0003588 // TDH1 SGDID:S0003588, Chr X from 338187-339185, Verified ORF // sgd // 11 // --- /// GENSCAN00000024101 // cdna:Genscan chromosome:SGD1:X:338187:339185:1 // ensembl // 11 // --- /// GENEFINDER00000024436 // cdna:GeneFinder chromosome:SGD1:X:338187:339185:1 // ensembl // 11 // --- /// YJL052W // cdna:known chromosome:SGD1:X:338187:339185:1 gene:YJL052W // ensembl // 11 // --- --- No cerevisiae_gene -1.39858277973672 1.48997485049942 -1.30625724581485 -1.23411793147529 -1.38668599331709 Max fold change below threshold 4 1.48997485049942 Max fold change below threshold PPPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1774060_at YBL091C-A.S1 Protein involved in regulation of phospholipid metabolism; homolog of Scs2p2; similar to D. melanogaster inturned protein 1.48995572595877 696.029602050781 879.766448974609 SCS22 6348 // chromatin silencing at telomere // inferred from genetic interaction /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 6348 // chromatin silencing at telomere // inferred from direct assay --- --- 827.502258300781 629.308654785156 762.750549316406 932.030639648438 0.000732421991415322 0.00415039015933871 0.00195312988944352 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL091C-A /GEN=RPL32 /DB_XREF=GI:41629673 /SEG=NC_001134:-46562,47177 /DEF=SCS2 homologue /NOTE=Ybl091c-ap --- --- --- --- --- S0007228 // span:155-174 // numtm:1 S0007228 // SCS22 SGDID:S0007228, Chr II from 47177-47144,47055-46562, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YBL091C-A // cdna:known chromosome:SGD1:II:46562:47177:-1 gene:YBL091C-A // ensembl // 11 // --- GENSCAN00000021067 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.48995572595877 -1.31493862671138 1.29053945858608 -1.08489237935313 1.12631794088671 Max fold change below threshold 4 1.48995572595877 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770292_at YOR016C.S1 Protein with similarity to Emp24p and Erv25p, member of the p24 family involved in ER to Golgi transport 1.48994692492978 678.889862060547 793.858581542969 ERP4 45045 // secretory pathway // inferred from mutant phenotype /// 45045 // secretory pathway // inferred from genetic interaction 16021 // integral to membrane // inferred from sequence similarity --- 760.44384765625 510.383178710938 847.396545410156 827.273315429688 0.000732421991415322 0.00122069998178631 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR016C /GEN=ERP4 /DB_XREF=GI:6324590 /SEG=NC_001147:-360460,361083 /DEF=Protein with similarity to Emp24p and Erv25p, member of the p24 family involved in ER to Golgi transport /NOTE=Erp4p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 10359606]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: secretory pathway [goid GO:0045045] [evidence IGI,IMP] [pmid 10359606] --- --- --- --- --- S0005542 // span:173-195 // numtm:1 S0005542 // ERP4 SGDID:S0005542, Chr XV from 361083-360460, reverse complement, Verified ORF // sgd // 11 // --- /// YOR016C // cdna:known chromosome:SGD1:XV:360460:361083:-1 gene:YOR016C // ensembl // 11 // --- --- No cerevisiae_gene -1.21406044561533 -1.48994692492978 1.47608433088971 1.11434466597619 1.08788218614617 Max fold change below threshold 4 1.48994692492978 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775974_at YGL202W.S1 Aromatic aminotransferase, expression is regulated by general control of amino acid biosynthesis 1.48973253616217 3357.19567871094 4626.2841796875 ARO8 9072 // aromatic amino acid family metabolism // inferred from genetic interaction /// 9072 // aromatic amino acid family metabolism // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 8793 // aromatic-amino-acid transaminase activity // inferred from direct assay /// 8793 // aromatic-amino-acid transaminase activity // inferred from sequence similarity 4984.91748046875 3365.34936523438 3349.0419921875 4267.65087890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL202W /GEN=ARO8 /DB_XREF=GI:6321236 /SEG=NC_001139:+116061,117563 /DEF=Aromatic aminotransferase, expression is regulated by general control of amino acid biosynthesis /NOTE=Aro8p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: aromatic-amino-acid transaminase activity [goid GO:0008793] [evidence IDA] [pmid 9491082]; go_function: aromatic-amino-acid transaminase activity [goid GO:0008793] [evidence ISS] [pmid 9491083]; go_process: aromatic amino acid family metabolism [goid GO:0009072] [evidence IGI,IMP] [pmid 9491083] --- --- --- ec // 1A11_CUCMA // (P23599) 1-aminocyclopropane-1-carboxylate synthase CMW33 (EC 4.4.1.14) (ACC synthase) (S-adenosyl-L-methionine methylthioadenosine-lyase) // 2.0E-13 --- --- S0003170 // ARO8 SGDID:S0003170, Chr VII from 116063-117565, Verified ORF // sgd // 11 // --- /// GENSCAN00000019197 // cdna:Genscan chromosome:SGD1:VII:116063:117565:1 // ensembl // 11 // --- /// GENEFINDER00000021441 // cdna:GeneFinder chromosome:SGD1:VII:116063:117565:1 // ensembl // 11 // --- /// YGL202W // cdna:known chromosome:SGD1:VII:116063:117565:1 gene:YGL202W // ensembl // 11 // --- --- No cerevisiae_gene -1.26600340995036 -1.48124813785019 -1.48973253616217 -1.4884607276043 -1.16807059010092 Max fold change below threshold 4 1.48973253616217 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773841_at YML048W.S1 ER localized integral membrane protein that may promote secretion of certain hexose transporters, including Gal2p; involved in glucose-dependent repression 1.48958075316794 1644.66101074219 1784.83660888672 GSF2 6457 // protein folding // inferred from mutant phenotype /// 45045 // secretory pathway // inferred from genetic interaction /// 45045 // secretory pathway // inferred from mutant phenotype /// 45045 // secretory pathway // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay /// 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay --- 1741.14489746094 1359.06335449219 1930.25866699219 1828.5283203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML048W /GEN=GSF2 /DB_XREF=GI:6323593 /SEG=NC_001145:+178426,179637 /DEF=ER localized integral membrane protein that may promote secretion of certain hexose transporters, including Gal2p; involved in glucose-dependent repression /NOTE=Gsf2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA] [pmid 10377429]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: secretory pathway [goid GO:0045045] [evidence IGI,IMP,IPI] [pmid 10377429] --- --- --- --- --- S0004511 // span:181-203 // numtm:1 S0004511 // GSF2 SGDID:S0004511, Chr XIII from 178426-179637, Verified ORF // sgd // 10 // --- /// GENSCAN00000018677 // cdna:Genscan chromosome:SGD1:XIII:178426:179637:1 // ensembl // 10 // --- /// GENEFINDER00000021834 // cdna:GeneFinder chromosome:SGD1:XIII:178426:179637:1 // ensembl // 10 // --- /// YML048W // cdna:known chromosome:SGD1:XIII:178426:179637:1 gene:YML048W // ensembl // 10 // --- --- No cerevisiae_gene 1.13404939152558 -1.28113593211518 1.48958075316794 1.10861460743849 1.05018733534411 Max fold change below threshold 4 1.48958075316794 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775069_at YGL003C.S1 CDC20 homolog 1; protein required for Clb2 and Ase1 degradation 1.48953527767566 619.386993408203 817.196807861328 CDH1 22 // mitotic spindle elongation // traceable author statement /// 70 // mitotic sister chromatid segregation // traceable author statement /// 7091 // mitotic metaphase/anaphase transition // traceable author statement /// 7092 // anaphase-promoting complex activation during mitotic cell cycle // inferred from mutant phenotype /// 8361 // regulation of cell size // inferred from direct assay /// 16567 // protein ubiquitination // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5680 // anaphase-promoting complex // traceable author statement /// 5737 // cytoplasm // inferred from direct assay 8047 // enzyme activator activity // traceable author statement 769.331970214844 516.491271972656 722.28271484375 865.061645507813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL003C /GEN=CDH1 /DB_XREF=GI:6321435 /SEG=NC_001139:-492476,494176 /DEF=CDC20 homolog 1 /NOTE=Cdh1p; go_component: anaphase-promoting complex [goid GO:0005680] [evidence TAS] [pmid 10465783]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12456658]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12456658]; go_function: enzyme activator activity [goid GO:0008047] [evidence TAS] [pmid 10465783]; go_process: cyclin catabolism [goid GO:0008054] [evidence TAS] [pmid 10465783]; go_process: mitotic metaphase/anaphase transition [goid GO:0007091] [evidence TAS] [pmid 10465783]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence TAS] [pmid 10465783]; go_process: mitotic spindle elongation [goid GO:0000022] [evidence TAS] [pmid 10465783]; go_process: regulation of cell size [goid GO:0008361] [evidence IDA] [pmid 12089449]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10465783] --- --- --- --- scop // a.4.1.Paired domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Paired domain // 0.990000009536743 --- S0002971 // CDH1 SGDID:S0002971, Chr VII from 494178-492478, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019339 // cdna:Genscan chromosome:SGD1:VII:492478:494154:-1 // ensembl // 11 // --- /// GENEFINDER00000021394 // cdna:GeneFinder chromosome:SGD1:VII:492478:493956:-1 // ensembl // 11 // --- /// YGL003C // cdna:known chromosome:SGD1:VII:492478:494178:-1 gene:YGL003C // ensembl // 11 // --- --- No cerevisiae_gene -1.48727120408964 -1.48953527767566 1.20933403201257 -1.06513966678722 1.12443220742047 Max fold change below threshold 4 1.48953527767566 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777248_at YIR003W.S1 Hypothetical protein 1.48926539167835 1340.97674560547 1257.87139892578 --- --- 15629 // actin cytoskeleton // inferred from direct assay --- 1203.80346679688 1089.96215820313 1591.99133300781 1311.93933105469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR003W /GEN=MPH1 /DB_XREF=GI:6322193 /SEG=NC_001141:+360882,362921 /DEF=Hypothetical ORF /NOTE=Yir003wp; go_component: actin cytoskeleton [goid GO:0015629] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001442 // YIR003W SGDID:S0001442, Chr IX from 360882-362921, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016478 // cdna:Genscan chromosome:SGD1:IX:360882:362921:1 // ensembl // 11 // --- /// GENEFINDER00000019053 // cdna:GeneFinder chromosome:SGD1:IX:360882:362921:1 // ensembl // 11 // --- /// YIR003W // cdna:known chromosome:SGD1:IX:360882:362921:1 gene:YIR003W // ensembl // 11 // --- --- No cerevisiae_gene -1.48926539167835 -1.10444519356656 1.15677238829808 1.32246780883913 1.08982850377192 Max fold change below threshold 4 1.48926539167835 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778014_at YMR222C.S1 Serine hydrolase that localizes to both the nucleus and cytoplasm; sequence is similar to Fsh1p and Fsh3p 1.4892126954057 783.213745117188 764.896728515625 FSH2 --- 5737 // cytoplasm // inferred from direct assay 17171 // serine hydrolase activity // inferred from direct assay 676.977722167969 558.263671875 1008.16381835938 852.815734863281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR222C /GEN=FSH2 /DB_XREF=GI:6323878 /SEG=NC_001145:-715637,716308 /DEF=Serine hydrolase that localizes to both the nucleus and cytoplasm. Sequence similary to Fsh1p and Fsh3p /NOTE=Fsh2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: serine hydrolase activity [goid GO:0017171] [evidence IDA] [pmid 14645503]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004835 // FSH2 SGDID:S0004835, Chr XIII from 716308-715637, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018903 // cdna:Genscan chromosome:SGD1:XIII:715637:716308:-1 // ensembl // 11 // --- /// GENEFINDER00000021853 // cdna:GeneFinder chromosome:SGD1:XIII:715637:716308:-1 // ensembl // 11 // --- /// YMR222C // cdna:known chromosome:SGD1:XIII:715637:716308:-1 gene:YMR222C // ensembl // 11 // --- --- No cerevisiae_gene 1.05849641390879 -1.2126487111265 1.41213231306602 1.4892126954057 1.25973973284114 Max fold change below threshold 4 1.4892126954057 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774756_at YML100W.S1 Large subunit of trehalose 6-phosphate synthase (Tps1p)/phosphatase (Tps2p) complex, which converts uridine-5'-diphosphoglucose and glucose 6-phosphate to trehalose, homologous to Tps3p and may share function 1.4891258287977 8109.46533203125 6998.4560546875 TSL1 5992 // trehalose biosynthesis // inferred from mutant phenotype /// 5992 // trehalose biosynthesis // inferred from physical interaction /// 5992 // trehalose biosynthesis // inferred from genetic interaction /// 6950 // response to stress // inferred from mutant phenotype 5946 // alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) // inferred from mutant phenotype /// 5946 // alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) // inferred from physical interaction /// 5946 // alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) // inferred from genetic interaction 3825 // alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity // inferred from mutant phenotype /// 4805 // trehalose-phosphatase activity // inferred from genetic interaction /// 30234 // enzyme regulator activity // inferred from direct assay 8042.4072265625 10101.0166015625 6117.9140625 5954.5048828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML100W /GEN=TSL1 /DB_XREF=GI:6323537 /SEG=NC_001145:+70624,73920 /DEF=123 kD regulatory subunit of trehalose-6-phosphate synthase/phosphatase complex; homologous to TPS3 gene product /NOTE=Tsl1p; go_component: alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) [goid GO:0005946] [evidence IGI,IMP,IPI] [pmid 9837904]; go_function: enzyme regulator activity [goid GO:0030234] [evidence IDA] [pmid 8404905]; go_process: response to stress [goid GO:0006950] [evidence IMP] [pmid 9837904]; go_process: trehalose biosynthesis [goid GO:0005992] [evidence IGI,IMP,IPI] [pmid 9837904] --- --- --- --- --- --- S0004566 // TSL1 SGDID:S0004566, Chr XIII from 70624-73920, Verified ORF // sgd // 11 // --- /// GENSCAN00000018634 // cdna:Genscan chromosome:SGD1:XIII:70624:73920:1 // ensembl // 11 // --- /// GENEFINDER00000021926 // cdna:GeneFinder chromosome:SGD1:XIII:70624:73920:1 // ensembl // 11 // --- /// YML100W // cdna:known chromosome:SGD1:XIII:70624:73920:1 gene:YML100W // ensembl // 11 // --- --- No cerevisiae_gene -1.4891258287977 1.255969303345 -1.25447583704903 -1.31456688413764 -1.35064247739164 Max fold change below threshold 4 1.4891258287977 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779478_at YGL026C.S1 Tryptophan synthase involved in tryptophan biosynthesis, regulated by the general control system of amino acid biosynthesis 1.48891708342683 3227.65319824219 2349.97351074219 TRP5 162 // tryptophan biosynthesis // inferred from mutant phenotype /// 162 // tryptophan biosynthesis // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4834 // tryptophan synthase activity // inferred from sequence similarity /// 4834 // tryptophan synthase activity // inferred from direct assay 2335.85278320313 2977.41528320313 3477.89111328125 2364.09423828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL026C /GEN=TRP5 /DB_XREF=GI:6321412 /SEG=NC_001139:-446415,448538 /DEF=tryptophan synthetase /NOTE=Trp5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: tryptophan synthase activity [goid GO:0004834] [evidence IDA,ISS] [pmid 6342605]; go_process: tryptophan biosynthesis [goid GO:0000162] [evidence IMP] [pmid 10790693]; go_process: tryptophan biosynthesis [goid GO:0000162] [evidence TAS] [pmid 1946350] --- --- --- --- --- --- S0002994 // TRP5 SGDID:S0002994, Chr VII from 448540-446417, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019320 // cdna:Genscan chromosome:SGD1:VII:446417:448540:-1 // ensembl // 11 // --- /// GENEFINDER00000021493 // cdna:GeneFinder chromosome:SGD1:VII:446417:448540:-1 // ensembl // 11 // --- /// YGL026C // cdna:known chromosome:SGD1:VII:446417:448540:-1 gene:YGL026C // ensembl // 11 // --- --- No cerevisiae_gene 1.26526745901006 1.27465879040555 -1.10872312135419 1.48891708342683 1.01209042593832 Max fold change below threshold 4 1.48891708342683 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772570_at YKR083C.S1 Essential protein, component of the DASH complex; involved in spindle integrity and kinetochore function; interacts with Duo1p and Dam1p; localizes to intranuclear spindles and kinetochore 1.48880729685147 34.4020671844482 46.469181060791 DAD2 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from mutant phenotype /// 31110 // regulation of microtubule polymerization or depolymerization // inferred from physical interaction /// 31110 // regulation of microtubule polymerization or depolymerization // inferred from direct assay 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 5819 // spindle // inferred from direct assay /// 42729 // DASH complex // inferred from direct assay /// 42729 // DASH complex // inferred from physical interaction 5200 // structural constituent of cytoskeleton // inferred from direct assay 45.794994354248 30.7595176696777 38.0446166992188 47.143367767334 0.000244141003349796 0.00292969006113708 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR083C /GEN=DAD2 /DB_XREF=GI:6322936 /SEG=NC_001143:-596063,596464 /DEF=Essential protein, component of the DASH complex; involved in spindle integrity and kinetochore function; interacts with Duo1p and Dam1p; localizes to intranuclear spindles and kintechore /NOTE=Dad2p; go_component: DASH complex [goid GO:0042729] [evidence IDA,IPI] [pmid 11799062]; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IDA] [pmid 11756468]; go_component: spindle [goid GO:0005819] [evidence IDA] [pmid 11756468]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IDA] [pmid 11756468]; go_process: mitotic spindle assembly (sensu Fungi) [goid GO:0030472] [evidence IMP] [pmid 11756468] --- --- --- --- --- --- S0001791 // DAD2 SGDID:S0001791, Chr XI from 596464-596063, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018485 // cdna:Genscan chromosome:SGD1:XI:596063:596464:-1 // ensembl // 11 // --- /// GENEFINDER00000023073 // cdna:GeneFinder chromosome:SGD1:XI:596063:596464:-1 // ensembl // 11 // --- /// YKR083C // cdna:known chromosome:SGD1:XI:596063:596464:-1 gene:YKR083C // ensembl // 11 // --- --- No cerevisiae_gene 1.03337067091783 -1.48880729685147 1.35621879863386 -1.20371811645006 1.02944368554029 Max fold change below threshold 4 1.48880729685147 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772665_at YPL125W.S1 Karyopherin with a role in the assembly or export of 60S ribosomal subunits 1.48872953085928 849.242858886719 620.475738525391 KAP120 6606 // protein-nucleus import // inferred from physical interaction 5643 // nuclear pore // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 17056 // structural constituent of nuclear pore // inferred from physical interaction 601.558471679688 868.544677734375 829.941040039063 639.393005371094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL125W /GEN=KAP120 /DB_XREF=GI:6325132 /SEG=NC_001148:+313387,316485 /DEF=karyopherin /NOTE=Kap120p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10684247]; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 10684247]; go_function: structural constituent of nuclear pore [goid GO:0017056] [evidence IPI] [pmid 10684247]; go_process: protein-nucleus import [goid GO:0006606] [evidence IPI] [pmid 10684247] --- --- --- --- --- --- S0006046 // KAP120 SGDID:S0006046, Chr XVI from 313387-316485, Verified ORF // sgd // 11 // --- /// GENSCAN00000017094 // cdna:Genscan chromosome:SGD1:XVI:313387:316485:1 // ensembl // 11 // --- /// YPL125W // cdna:known chromosome:SGD1:XVI:313387:316485:1 gene:YPL125W // ensembl // 11 // --- --- No cerevisiae_gene 1.48872953085928 1.44382419768639 1.19949352339413 1.37965148711426 1.06289419145867 Max fold change below threshold 4 1.48872953085928 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776968_at YOR065W.S1 Cytochrome c1, component of the mitochondrial respiratory chain; expression is regulated by the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex 1.48860646137447 4809.0556640625 3485.71643066406 CYT1 6119 // oxidative phosphorylation // traceable author statement /// 6122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from mutant phenotype /// 6122 // mitochondrial electron transport, ubiquinol to cytochrome c // traceable author statement 5743 // mitochondrial inner membrane // traceable author statement /// 5746 // mitochondrial electron transport chain // traceable author statement /// 5750 // respiratory chain complex III (sensu Eukaryota) // inferred from direct assay 45153 // electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity // inferred from mutant phenotype /// 45153 // electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity // traceable author statement 3767.69409179688 5608.61376953125 4009.49755859375 3203.73876953125 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR065W /GEN=CYT1 /DB_XREF=GI:6324639 /SEG=NC_001147:+447440,448369 /DEF=Cytochrome c1 /NOTE=Cyt1p; go_component: mitochondrial electron transport chain [goid GO:0005746] [evidence TAS] [pmid 11279090]; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence TAS] [pmid 11279090]; go_component: respiratory chain complex III (sensu Eukarya) [goid GO:0005750] [evidence IDA] [pmid 10873857]; go_function: electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity [goid GO:0045153] [evidence IMP,TAS] [pmid 11279090]; go_process: mitochondrial electron transport, ubiquinol to cytochrome c [goid GO:0006122] [evidence IMP,TAS] [pmid 11279090]; go_process: oxidative phosphorylation [goid GO:0006119] [evidence TAS] [pmid 11279090] --- --- --- --- scop // a.3.1.Cytochrome bc1 domain // All alpha proteins; Cytochrome c; Cytochrome c; Cytochrome bc1 domain // 0.0 --- S0005591 // CYT1 SGDID:S0005591, Chr XV from 447440-448369, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022719 // cdna:GeneFinder chromosome:SGD1:XV:447440:448480:1 // ensembl // 11 // --- /// YOR065W // cdna:known chromosome:SGD1:XV:447440:448369:1 gene:YOR065W // ensembl // 11 // --- --- No cerevisiae_gene -1.3069893150645 1.48860646137447 -1.15468286105923 1.0641781049378 -1.17603037040006 Max fold change below threshold 4 1.48860646137447 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774877_at YDL005C.S1 RNA Polymerase II transcriptional regulation mediator; Stoichiometric member of mediator complex 1.48847743927574 792.021057128906 608.828918457031 MED2 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from direct assay 561.025207519531 748.96875 835.073364257813 656.632629394531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL005C /GEN=MED2 /DB_XREF=GI:6320199 /SEG=NC_001136:-441011,442306 /DEF=RNA Polymerase II transcriptional regulation mediator /NOTE=Med2p; go_component: mediator complex [goid GO:0000119] [evidence IDA] [pmid 9420330]; go_function: RNA polymerase II transcription mediator activity [goid GO:0016455] [evidence IDA] [pmid 9420330]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IDA] [pmid 9420330] --- --- --- --- --- --- S0002163 // MED2 SGDID:S0002163, Chr IV from 442306-441011, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023927 // cdna:GeneFinder chromosome:SGD1:IV:441011:442171:-1 // ensembl // 11 // --- /// YDL005C // cdna:known chromosome:SGD1:IV:441011:442306:-1 gene:YDL005C // ensembl // 11 // --- --- No cerevisiae_gene 1.36616413019509 1.33500017461145 1.26831045850791 1.48847743927574 1.17041555458392 Max fold change below threshold 4 1.48847743927574 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771151_at YPR081C.S1 Protein with sequence similarity to Grs1p, which is a glycyl-tRNA synthetase; cannot substitute for Grs1p; possible pseudogene that is expressed at very low levels 1.48841434768526 796.599639892578 677.631713867188 GRS2 6426 // glycyl-tRNA aminoacylation // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay 4820 // glycine-tRNA ligase activity // inferred from sequence similarity 632.572570800781 651.669189453125 941.530090332031 722.690856933594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR081C /GEN=GRS2 /DB_XREF=GI:6325338 /SEG=NC_001148:-702110,703966 /DEF=Protein with sequence similarity to Grs1p, which is a glycyl-tRNA synthetase; cannot substitute for Grs1p; possible pseudogene that is expressed at very low levels /NOTE=Grs2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: glycine-tRNA ligase activity [goid GO:0004820] [evidence ISS] [pmid 10874035]; go_process: glycyl-tRNA aminoacylation [goid GO:0006426] [evidence ISS] [pmid 10874035] --- --- --- --- --- --- S0006285 // GRS2 SGDID:S0006285, Chr XVI from 703968-702112, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017246 // cdna:Genscan chromosome:SGD1:XVI:702112:703968:-1 // ensembl // 11 // --- /// GENEFINDER00000021013 // cdna:GeneFinder chromosome:SGD1:XVI:702112:703794:-1 // ensembl // 11 // --- /// YPR081C // cdna:known chromosome:SGD1:XVI:702112:703968:-1 gene:YPR081C // ensembl // 11 // --- --- No cerevisiae_gene -1.17248491272885 1.03018881869659 1.45625873390075 1.48841434768526 1.14246315805115 Max fold change below threshold 4 1.48841434768526 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773073_at YOR306C.S1 Protein with similarity to mammalian monocarboxylate permeases, which are involved in transport of monocarboxylic acids across the plasma membrane; mutant is not deficient in monocarboxylate transport 1.48840931247911 442.288864135742 589.733093261719 MCH5 6810 // transport // inferred from sequence similarity 16020 // membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity /// 8028 // monocarboxylic acid transporter activity // inferred from genetic interaction /// 8028 // monocarboxylic acid transporter activity // inferred from mutant phenotype 555.140380859375 372.975616455078 511.602111816406 624.325805664063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR306C /GEN=MCH5 /DB_XREF=GI:6324882 /SEG=NC_001147:-889863,891428 /DEF=monocarboxylate permease homologue /NOTE=Mch5p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 11536335]; go_function: monocarboxylic acid transporter activity [goid GO:0008028] [evidence IGI,IMP] [pmid 11536335]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 11536335]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 11536335] --- --- --- --- --- S0005833 // span:108-130,145-167,174-193,198-220,233-255,270-292,332-354,367-385,392-414,424-446,459-481,491-513 // numtm:12 S0005833 // MCH5 SGDID:S0005833, Chr XV from 891428-889863, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017763 // cdna:Genscan chromosome:SGD1:XV:889863:891428:-1 // ensembl // 11 // --- /// GENEFINDER00000022724 // cdna:GeneFinder chromosome:SGD1:XV:889863:891428:-1 // ensembl // 11 // --- /// YOR306C // cdna:known chromosome:SGD1:XV:889863:891428:-1 gene:YOR306C // ensembl // 11 // --- --- No cerevisiae_gene 1.3852829226138 -1.48840931247911 -1.11293580376134 -1.08510181650422 1.12462690013215 Max fold change below threshold 4 1.48840931247911 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771855_at YNL252C.S1 Mitochondrial ribosomal protein of the large subunit 1.48838873134076 675.380035400391 785.527496337891 MRPL17 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement /// 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // traceable author statement 748.684448242188 526.128540039063 824.631530761719 822.370544433594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL252C /GEN=MRPL17 /DB_XREF=GI:6324077 /SEG=NC_001146:-171440,172285 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl17p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0005196 // MRPL17 SGDID:S0005196, Chr XIV from 172285-171440, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019838 // cdna:Genscan chromosome:SGD1:XIV:171440:172285:-1 // ensembl // 11 // --- /// YNL252C // cdna:known chromosome:SGD1:XIV:171440:172285:-1 gene:YNL252C // ensembl // 11 // --- --- No cerevisiae_gene 1.12747465728867 -1.42300672034747 1.48838873134076 1.10144071069974 1.0984207650692 Max fold change below threshold 4 1.48838873134076 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775565_at YNL230C.S1 Elongin A, F-box protein that forms a heterodimer with Elc1p and participates in transcription elongation 1.48815251111866 328.292999267578 465.657012939453 ELA1 6368 // RNA elongation from RNA polymerase II promoter // inferred from sequence similarity 8023 // transcription elongation factor complex // inferred from sequence similarity 3711 // transcriptional elongation regulator activity // inferred from sequence similarity 432.820129394531 290.843933105469 365.742065429688 498.493896484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL230C /GEN=ELA1 /DB_XREF=GI:6324099 /SEG=NC_001146:-217522,218661 /DEF=Elongin A, F-box protein that forms a heterodimer with Elc1p and participates in transcription elongation /NOTE=Ela1p; go_component: transcription elongation factor complex [goid GO:0008023] [evidence ISS] [pmid 10430890]; go_function: transcriptional elongation regulator activity [goid GO:0003711] [evidence ISS] [pmid 10430890]; go_process: RNA elongation from Pol II promoter [goid GO:0006368] [evidence ISS] [pmid 10430890] --- --- --- --- --- --- S0005174 // ELA1 SGDID:S0005174, Chr XIV from 218661-217522, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019856 // cdna:Genscan chromosome:SGD1:XIV:217522:218625:-1 // ensembl // 11 // --- /// YNL230C // cdna:known chromosome:SGD1:XIV:217522:218661:-1 gene:YNL230C // ensembl // 11 // --- GENEFINDER00000020540 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.13959806060259 -1.48815251111866 1.02252350583283 -1.18340264985937 1.15173454890306 Max fold change below threshold 4 1.48815251111866 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774835_at YIL033C.S1 Regulatory subunit of the cyclic AMP-dependent protein kinase (PKA), a component of a signaling pathway that controls a variety of cellular processes, including metabolism, cell cycle, stress response, stationary phase, and sporulation 1.48774328032812 3220.98449707031 3125.86193847656 BCY1 6950 // response to stress // inferred from mutant phenotype /// 7124 // pseudohyphal growth // inferred from mutant phenotype /// 7165 // signal transduction // inferred from mutant phenotype /// 9408 // response to heat // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4862 // cAMP-dependent protein kinase inhibitor activity // inferred from mutant phenotype 3159.43969726563 3015.4091796875 3426.55981445313 3092.2841796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL033C /GEN=BCY1 /DB_XREF=GI:6322156 /SEG=NC_001141:-290418,291668 /DEF=Involved in heat shock resistance, glycogen accumulation, and sporulation /NOTE=Bcy1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: cAMP-dependent protein kinase inhibitor activity [goid GO:0004862] [evidence IMP] [pmid 6292221]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 10373537]; go_process: response to heat [goid GO:0009408] [evidence IMP] [pmid 3037314]; go_process: response to stress [goid GO:0006950] [evidence IMP] [pmid 3037314]; go_process: signal transduction [goid GO:0007165] [evidence IMP] [pmid 3037314] --- --- --- --- --- --- S0001295 // BCY1 SGDID:S0001295, Chr IX from 291668-290418, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000016452 // cdna:Genscan chromosome:SGD1:IX:290418:291668:-1 // ensembl // 10 // --- /// GENEFINDER00000018999 // cdna:GeneFinder chromosome:SGD1:IX:290418:291668:-1 // ensembl // 10 // --- /// YIL033C // cdna:known chromosome:SGD1:IX:290418:291668:-1 gene:YIL033C // ensembl // 10 // --- --- No cerevisiae_gene -1.48774328032812 -1.04776483355836 1.17994059994289 1.08454667370885 -1.02171712354875 Max fold change below threshold 4 1.48774328032812 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777191_at YOL159C-A.S1 Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 1.48764518823387 236.605087280273 264.917617797852 --- --- 5737 // cytoplasm // inferred from direct assay --- 229.927703857422 264.070983886719 209.139190673828 299.907531738281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL159C-A /GEN=AAD15 /DB_XREF=GI:13129187 /SEG=NC_001147:-15232,15504 /DEF=Hypothetical ORF identified by homology. See FEBS Letters [2000] 487:31-36. /NOTE=Yol159c-ap; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0007627 // YOL159C-A SGDID:S0007627, Chr XV from 15504-15232, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YOL159C-A // cdna:known chromosome:SGD1:XV:15232:15504:-1 gene:YOL159C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.06393670948102 1.14849572042206 1.48764518823387 -1.09940037119114 1.3043557896975 Max fold change below threshold 4 1.48764518823387 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770577_at YGR085C.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl11Bp; involved in ribosomal assembly; depletion causes degradation of proteins and RNA of the 60S subunit; has similarity to E. coli L5 and rat L11 /// Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl11Ap; involved in ribosomal assembly; depletion causes degradation of proteins and RNA of the 60S subunit; has similarity to E. coli L5 and rat L11 1.48748801261485 2808.76379394531 3833.21997070313 RPL11A /// RPL11B 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 4049.66650390625 2895.04077148438 2722.48681640625 3616.7734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR085C /GEN=RPL11B /DB_XREF=GI:6321522 /SEG=NC_001139:-648385,648909 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl11Ap; involved in ribosomal assembly; depletion causes degradation of proteins and RNA of the 60S subunit; has similarity to E. coli L5 and rat L11 /NOTE=Rpl11bp; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 2277060] --- --- --- --- --- --- S0003317 // RPL11B SGDID:S0003317, Chr VII from 648911-648387, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019404 // cdna:Genscan chromosome:SGD1:VII:648387:648911:-1 // ensembl // 11 // --- /// GENEFINDER00000021616 // cdna:GeneFinder chromosome:SGD1:VII:648387:648911:-1 // ensembl // 11 // --- /// YGR085C // cdna:known chromosome:SGD1:VII:648387:648911:-1 gene:YGR085C // ensembl // 11 // --- --- No cerevisiae_gene 1.35456466624072 -1.39882883301497 -1.32802367274164 -1.48748801261485 -1.11969040192506 Max fold change below threshold 4 1.48748801261485 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774279_at YER122C.S1 ADP-ribosylation factor GTPase activating protein (ARF GAP), involved in ER-Golgi transport; shares functional similarity with Gcs1p 1.48743749652904 952.878570556641 1085.99642944336 GLO3 6888 // ER to Golgi transport // inferred from genetic interaction /// 6888 // ER to Golgi transport // inferred from mutant phenotype /// 6890 // retrograde transport, Golgi to ER // inferred from genetic interaction /// 6890 // retrograde transport, Golgi to ER // inferred from mutant phenotype /// 6890 // retrograde transport, Golgi to ER // inferred from direct assay /// 48205 // COPI coating of Golgi vesicle // inferred from direct assay /// 48205 // COPI coating of Golgi vesicle // inferred from mutant phenotype 5793 // ER-Golgi intermediate compartment // inferred from physical interaction /// 30126 // COPI vesicle coat // inferred from physical interaction /// 30137 // COPI-coated vesicle // inferred from direct assay 8060 // ARF GTPase activator activity // inferred from direct assay 1172.10900878906 788.005554199219 1117.75158691406 999.883850097656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER122C /GEN=GLO3 /DB_XREF=GI:6320969 /SEG=NC_001137:-402867,404348 /DEF=Zinc-finger-containing protein with similarity to Gcs1p and Sps18p /NOTE=Glo3p; go_component: ER-Golgi intermediate compartment [goid GO:0005793] [evidence IPI] [pmid 9927415]; go_function: ARF GTPase activator activity [goid GO:0008060] [evidence IDA] [pmid 9927415]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IGI,IMP] [pmid 9927415]; go_process: retrograde transport, Golgi to ER [goid GO:0006890] [evidence IDA,IGI,IMP] [pmid 9927415] --- --- --- --- --- --- S0000924 // GLO3 SGDID:S0000924, Chr V from 404348-402867, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016903 // cdna:Genscan chromosome:SGD1:V:402867:404348:-1 // ensembl // 11 // --- /// GENEFINDER00000019687 // cdna:GeneFinder chromosome:SGD1:V:402867:404273:-1 // ensembl // 11 // --- /// YER122C // cdna:known chromosome:SGD1:V:402867:404348:-1 gene:YER122C // ensembl // 11 // --- --- No cerevisiae_gene 1.23606765190743 -1.48743749652904 -1.08107441396073 -1.04863103976893 -1.17224516495049 Max fold change below threshold 4 1.48743749652904 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770311_at YHR038W.S1 Mitochondrial ribosome recycling factor, essential for mitochondrial protein synthesis and for the maintenance of the respiratory function of mitochondria 1.48741543380681 266.824844360352 346.992233276367 RRF1 6412 // protein biosynthesis // inferred from mutant phenotype /// 6412 // protein biosynthesis // inferred from sequence similarity 5739 // mitochondrion // inferred from sequence similarity /// 5739 // mitochondrion // inferred from direct assay 8079 // translation termination factor activity // inferred from sequence similarity 326.830535888672 219.730499267578 313.919189453125 367.153930664063 0.00415039015933871 0.000244141003349796 0.000732421991415322 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR038W /GEN=RRF1 /DB_XREF=GI:6321827 /SEG=NC_001140:+184058,184750 /DEF=Ribosomal Recycling Factor 1; originally characterized as FIL1, a Factor for Isocitrate Lyase expression /NOTE=Rrf1p; go_component: mitochondrion [goid GO:0005739] [evidence ISS] [pmid 9746366]; go_function: translation termination factor activity [goid GO:0008079] [evidence ISS] [pmid 9746366]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP,ISS] [pmid 9746366] --- --- --- --- --- --- S0001080 // RRF1 SGDID:S0001080, Chr VIII from 184058-184750, Verified ORF // sgd // 11 // --- /// YHR038W // cdna:known chromosome:SGD1:VIII:184058:184750:1 gene:YHR038W // ensembl // 11 // --- --- No cerevisiae_gene -1.14481378627536 -1.48741543380681 1.45369656316217 -1.0411295227222 1.12337707266473 Max fold change below threshold 4 1.48741543380681 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769508_at SPBC16E9.14c.S1 --- 1.48730254049297 --- --- --- --- 14.4803485870361 21.5366592407227 14.8976631164551 12.3647737503052 0.194580003619194 0.171387001872063 0.194580003619194 0.0676269978284836 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC16E9.14c /DEF=cation efflux family --- --- --- --- --- --- SPBC16E9.14c // |||cation efflux family |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.05639485449733 1.48730254049297 -1.13994748676189 1.02881937039779 -1.17109693063965 Max fold change below threshold 4 1.48730254049297 Max fold change below threshold AMAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773984_at YGR271W.S1 Putative RNA helicase related to Ski2p, involved in translation inhibition of non-poly(A) mRNAs; required for repressing propagation of dsRNA viruses 1.48727871920189 239.680557250977 391.510223388672 SLH1 6445 // regulation of translation // inferred from mutant phenotype /// 6445 // regulation of translation // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay 3724 // RNA helicase activity // inferred from sequence similarity 348.733703613281 234.47770690918 244.883407592773 434.286743164063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR271W /GEN=SLH1 /DB_XREF=GI:6321710 /SEG=NC_001139:+1031796,1037699 /DEF=SKI2-like helicase /NOTE=Slh1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: RNA helicase activity [goid GO:0003724] [evidence ISS] [pmid 9133744]; go_process: regulation of translation [goid GO:0006445] [evidence IGI,IMP] [pmid 11438647] --- --- --- --- --- --- S0003503 // SLH1 SGDID:S0003503, Chr VII from 1031797-1037700, Verified ORF // sgd // 11 // --- /// GENSCAN00000019550 // cdna:Genscan chromosome:SGD1:VII:1031797:1037700:1 // ensembl // 11 // --- /// GENEFINDER00000021551 // cdna:GeneFinder chromosome:SGD1:VII:1031797:1037700:1 // ensembl // 11 // --- /// YGR271W // cdna:known chromosome:SGD1:VII:1031797:1037700:1 gene:YGR271W // ensembl // 11 // --- --- No cerevisiae_gene -1.20118014602352 -1.48727871920189 1.2607964641885 -1.42408057385907 1.24532483859275 Max fold change below threshold 4 1.48727871920189 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779497_at YGL167C.S1 High affinity Ca2+/Mn2+ P-type ATPase required for Ca2+ and Mn2+ transport into Golgi; involved in Ca2+ dependent protein sorting and processing; mutations in human homolog ATP2C1 cause acantholytic skin condition Hailey-Hailey disease 1.48581948108907 1813.03234863281 1333.08459472656 PMR1 6816 // calcium ion transport // inferred from direct assay /// 6828 // manganese ion transport // inferred from direct assay /// 45045 // secretory pathway // inferred from mutant phenotype 5794 // Golgi apparatus // traceable author statement 5388 // calcium-transporting ATPase activity // inferred from sequence similarity /// 5388 // calcium-transporting ATPase activity // inferred from mutant phenotype /// 5388 // calcium-transporting ATPase activity // inferred from direct assay /// 15410 // manganese-transporting ATPase activity // inferred from direct assay 1329.00695800781 1974.66442871094 1651.40026855469 1337.16223144531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL167C /GEN=PMR1 /DB_XREF=GI:6321271 /SEG=NC_001139:-187620,190472 /DEF=High affinity Ca2+/Mn2+ P-type ATPase, required for the transport of Ca2+ and Mn2+ into the Golgi; involved in Ca2+ dependent processes such as protein sorting, processing, and degradation /NOTE=Pmr1p; go_component: Golgi apparatus [goid GO:0005794] [evidence TAS] [pmid 12058017]; go_function: calcium-transporting ATPase activity [goid GO:0005388] [evidence IDA] [pmid 10545175]; go_function: calcium-transporting ATPase activity [goid GO:0005388] [evidence IMP,ISS] [pmid 1379856]; go_function: manganese-transporting ATPase activity [goid GO:0015410] [evidence IDA] [pmid 10801856]; go_process: calcium ion transport [goid GO:0006816] [evidence IDA] [pmid 10545175]; go_process: manganese ion transport [goid GO:0006828] [evidence IDA] [pmid 10801856]; go_process: secretory pathway [goid GO:0045045] [evidence IMP] [pmid 1379856] --- --- --- ec // A1A1_HUMAN // (P05023) Sodium/potassium-transporting ATPase alpha-1 chain precursor (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) // 0.0 --- S0003135 // span:106-128,290-312,322-344,811-830,845-862,883-905,910-928 // numtm:7 S0003135 // PMR1 SGDID:S0003135, Chr VII from 190474-187622, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019223 // cdna:Genscan chromosome:SGD1:VII:187622:190474:-1 // ensembl // 11 // --- /// GENEFINDER00000021431 // cdna:GeneFinder chromosome:SGD1:VII:187622:190474:-1 // ensembl // 11 // --- /// YGL167C // cdna:known chromosome:SGD1:VII:187622:190474:-1 gene:YGL167C // ensembl // 11 // --- S0003136 // sgd // 3 // Negative Strand Matching Probes /// YGL168W // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene 1.10452296154438 1.48581948108907 -1.13455831558202 1.24258210884776 1.00613636624576 Max fold change below threshold 4 1.48581948108907 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770208_at SPAC12G12.03.S1 --- 1.48581825670323 --- --- --- --- 13.1890125274658 19.5964756011963 15.3857307434082 14.5671901702881 0.219482004642487 0.0676269978284836 0.0375977009534836 0.0107421996071935 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC12G12.03 /DEF=RNA-binding protein --- --- --- --- --- --- SPAC12G12.03 // |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.16666992858095 1.48581825670323 -1.02602726757982 1.1665566858298 1.10449437666029 Max fold change below threshold 4 1.48581825670323 Max fold change below threshold APAAPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1770924_at YMR132C.S1 Protein of unknown function, contains sequence that closely resembles a J domain (typified by the E. coli DnaJ protein) 1.48560023243181 118.432723999023 187.884086608887 JLP2 --- 5737 // cytoplasm // inferred from direct assay --- 175.198150634766 118.934562683105 117.930885314941 200.570022583008 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR132C /GEN=JLP2 /DB_XREF=GI:6323780 /SEG=NC_001145:-534943,535569 /DEF=Hypothetical ORF /NOTE=Jlp2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004739 // JLP2 SGDID:S0004739, Chr XIII from 535569-534943, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YMR132C // cdna:known chromosome:SGD1:XIII:534943:535569:-1 gene:YMR132C // ensembl // 11 // --- --- No cerevisiae_gene -1.08227763266914 -1.47306339454555 1.19073783468878 -1.48560023243181 1.14481814937154 Max fold change below threshold 4 1.48560023243181 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773993_at YHR008C.S1 Manganese-containing superoxide dismutase 1.48516683797313 7158.55078125 5898.40014648438 SOD2 1302 // replicative cell aging // inferred from mutant phenotype /// 1320 // age-dependent response to reactive oxygen species during chronological cell aging // inferred from mutant phenotype /// 1324 // age-dependent response to oxidative stress during chronological cell aging // inferred from mutant phenotype /// 6800 // oxygen and reactive oxygen species metabolism // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5759 // mitochondrial matrix // inferred from direct assay 8383 // manganese superoxide dismutase activity // inferred from direct assay 6624.29443359375 8315.232421875 6001.869140625 5172.505859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR008C /GEN=SOD2 /DB_XREF=GI:6321796 /SEG=NC_001140:-122883,123584 /DEF=Manganese-containing superoxide dismutase /NOTE=Sod2p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 238997]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11914276]; go_function: manganese superoxide dismutase activity [goid GO:0008383] [evidence IDA] [pmid 238997]; go_process: oxygen and reactive oxygen species metabolism [goid GO:0006800] [evidence IMP] [pmid 3520557] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 8.00000004088451E-38 --- S0001050 // SOD2 SGDID:S0001050, Chr VIII from 123584-122883, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016560 // cdna:Genscan chromosome:SGD1:VIII:122883:123584:-1 // ensembl // 11 // --- /// GENEFINDER00000020273 // cdna:GeneFinder chromosome:SGD1:VIII:122883:123584:-1 // ensembl // 11 // --- /// YHR008C // cdna:known chromosome:SGD1:VIII:122883:123584:-1 gene:YHR008C // ensembl // 11 // --- --- No cerevisiae_gene -1.48516683797313 1.25526310843099 -1.16420496789514 -1.10370524221458 -1.28067412849566 Max fold change below threshold 4 1.48516683797313 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777060_at YDL092W.S1 Signal recognition particle (SRP) subunit, interacts with the RNA component of SRP to form the Alu domain, which is the region of SRP responsible for arrest of nascent chain elongation during membrane targeting; homolog of mammalian SRP14 1.48513359169505 524.683822631836 759.319183349609 SRP14 6617 // SRP-dependent cotranslational protein-membrane targeting, signal sequence recognition // inferred from curator /// 45047 // protein-ER targeting // inferred from physical interaction 5786 // signal recognition particle (sensu Eukaryota) // inferred from direct assay 5048 // signal sequence binding // inferred from physical interaction 723.364074707031 487.070037841797 562.297607421875 795.274291992188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL092W /GEN=SRP14 /DB_XREF=GI:6320111 /SEG=NC_001136:+292781,293221 /DEF=Signal recognition particle subunit /NOTE=Srp14p; go_component: signal recognition particle [goid GO:0005786] [evidence IDA] [pmid 7925282]; go_function: signal sequence binding [goid GO:0005048] [evidence IPI] [pmid 7925282]; go_process: protein-ER targeting [goid GO:0045047] [evidence IPI] [pmid 7925282] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 2.0 --- S0002250 // SRP14 SGDID:S0002250, Chr IV from 292781-293221, Verified ORF // sgd // 10 // --- /// GENSCAN00000025031 // cdna:Genscan chromosome:SGD1:IV:292781:293221:1 // ensembl // 10 // --- /// YDL092W // cdna:known chromosome:SGD1:IV:292781:293221:1 gene:YDL092W // ensembl // 10 // --- --- No cerevisiae_gene 1.31574858645632 -1.48513359169505 1.0890805686356 -1.28644345122442 1.09941082201833 Max fold change below threshold 4 1.48513359169505 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774505_at YGR129W.S1 Component of the spliceosome complex involved in pre-mRNA splicing; involved in regulation of cell cycle progression 1.48483744220429 923.58740234375 1152.20788574219 SYF2 398 // nuclear mRNA splicing, via spliceosome // traceable author statement /// 7049 // cell cycle // traceable author statement 5681 // spliceosome complex // inferred from direct assay 31202 // RNA splicing factor activity, transesterification mechanism // inferred from mutant phenotype 1087.80419921875 1114.56652832031 732.608276367188 1216.61157226563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR129W /GEN=SYF2 /DB_XREF=GI:6321568 /SEG=NC_001139:+750403,751050 /DEF=SYnthetic lethal with cdcForty /NOTE=Syf2p; go_component: spliceosome complex [goid GO:0005681] [evidence IDA] [pmid 12088152]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IMP] [pmid 12384582]; go_process: cell cycle [goid GO:0007049] [evidence TAS] [pmid 11102353]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence TAS] [pmid 11102353] --- --- --- --- --- --- S0003361 // SYF2 SGDID:S0003361, Chr VII from 750405-751052, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021403 // cdna:GeneFinder chromosome:SGD1:VII:750405:751052:1 // ensembl // 11 // --- /// YGR129W // cdna:known chromosome:SGD1:VII:750405:751052:1 gene:YGR129W // ensembl // 11 // --- --- No cerevisiae_gene -1.24263211004805 1.02460215645498 1.41151339222191 -1.48483744220429 1.11841043924944 Max fold change below threshold 4 1.48483744220429 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771143_at YML054C.S1 Cytochrome b2 (L-lactate cytochrome-c oxidoreductase), component of the mitochondrial intermembrane space, required for lactate utilization; expression is repressed by glucose and anaerobic conditions 1.48465449216256 8572.1298828125 6905.59838867188 CYB2 6118 // electron transport // traceable author statement 5758 // mitochondrial intermembrane space // inferred from direct assay 4460 // L-lactate dehydrogenase (cytochrome) activity // inferred from direct assay 8100.44091796875 11070.73046875 6073.529296875 5710.755859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML054C /GEN=CYB2 /DB_XREF=GI:6323587 /SEG=NC_001145:-165533,167308 /DEF=Expression is repressed by glucose and anaerobic conditions, is induced by L-lactate and is regulated by GRR1, ROX3, HAP1, HXK2 and CYC8 /NOTE=Cyb2p; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence IDA] [pmid 3004948]; go_function: L-lactate dehydrogenase (cytochrome) activity [goid GO:0004460] [evidence IDA] [pmid 3004948]; go_process: electron transport [goid GO:0006118] [evidence TAS] [pmid 11502169] --- --- --- --- --- --- S0004518 // CYB2 SGDID:S0004518, Chr XIII from 167308-165533, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018671 // cdna:Genscan chromosome:SGD1:XIII:165533:167308:-1 // ensembl // 11 // --- /// GENEFINDER00000021779 // cdna:GeneFinder chromosome:SGD1:XIII:165533:167308:-1 // ensembl // 11 // --- /// YML054C // cdna:known chromosome:SGD1:XIII:165533:167308:-1 gene:YML054C // ensembl // 11 // --- --- No cerevisiae_gene -1.48465449216256 1.36668245356773 -1.2711893978914 -1.33372879622671 -1.41845337420103 Max fold change below threshold 4 1.48465449216256 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777305_at YPL074W.S1 Putative ATPase of the CDC48/PAS1/SEC18 (AAA) family, localized to the cortex of mother cells but not to daughter cells 1.48444082467169 241.072402954102 281.853591918945 YTA6 --- 5938 // cell cortex // inferred from direct assay 16887 // ATPase activity // inferred from sequence similarity 262.104187011719 187.757354736328 294.387451171875 301.602996826172 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL074W /GEN=YTA6 /DB_XREF=GI:6325183 /SEG=NC_001148:+415758,418022 /DEF=Putative ATPase of the CDC48/PAS1/SEC18 (AAA) family, localized to the cortex of mother cells but not to daughter cells /NOTE=Yta6p; go_component: cell cortex [goid GO:0005938] [evidence IDA] [pmid 11553699]; go_function: ATPase activity [goid GO:0016887] [evidence ISS] [pmid 7754704]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005995 // YTA6 SGDID:S0005995, Chr XVI from 415760-418024, Verified ORF // sgd // 11 // --- /// GENSCAN00000017132 // cdna:Genscan chromosome:SGD1:XVI:415760:418024:1 // ensembl // 11 // --- /// GENEFINDER00000021002 // cdna:GeneFinder chromosome:SGD1:XVI:415760:418024:1 // ensembl // 11 // --- /// YPL074W // cdna:known chromosome:SGD1:XVI:415760:418024:1 gene:YPL074W // ensembl // 11 // --- --- No cerevisiae_gene -1.35807339762889 -1.39597294273664 1.48444082467169 1.12316958583616 1.1506988891127 Max fold change below threshold 4 1.48444082467169 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776196_at YCR082W.S1 Protein of unknown function, proposed to be a Ada Histone acetyltransferase complex component; GFP tagged protein is localized to the cytoplasm and nucleus 1.48441008423049 1393.35125732422 1841.96136474609 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1918.07092285156 1405.50256347656 1381.19995117188 1765.85180664063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR082W /GEN=SRB8 /DB_XREF=GI:6319924 /SEG=NC_001135:+258879,259265 /DEF=component of the yeast ADA acetyltransferase complex /NOTE=Ycr082wp --- --- --- --- --- --- S0000678 // AHC2 SGDID:S0000678, Chr III from 258879-259265, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000022516 // cdna:Genscan chromosome:SGD1:III:258879:259265:1 // ensembl // 11 // --- /// GENEFINDER00000023308 // cdna:GeneFinder chromosome:SGD1:III:258879:259265:1 // ensembl // 11 // --- /// YCR082W // cdna:known chromosome:SGD1:III:258879:259265:1 gene:YCR082W // ensembl // 11 // --- --- No cerevisiae_gene -1.48441008423049 -1.36468689043664 -1.07038532636566 -1.38869895066546 -1.08620152361512 Max fold change below threshold 4 1.48441008423049 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775661_at YLL001W.S1 Dynamin-related GTPase required for mitochondrial fission and the maintenance of mitochondrial morphology, assembles on the cytoplasmic face of mitochondrial tubules at sites at which division will occur; also participates in endocytosis 1.484271656778 1248.48303222656 1013.30426025391 DNM1 266 // mitochondrial fission // inferred from genetic interaction /// 266 // mitochondrial fission // inferred from mutant phenotype /// 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype 5741 // mitochondrial outer membrane // inferred from direct assay 3924 // GTPase activity // traceable author statement 987.950927734375 1209.32922363281 1287.63684082031 1038.65759277344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL001W /GEN=DNM1 /DB_XREF=GI:6323028 /SEG=NC_001144:+147889,150162 /DEF=Dynamin-related GTPase required for mitochondrial fission and the maintenance of mitochondrial morphology, assembles on the cytoplasmic face of mitochondrial tubules at sites at which division will occur; also participates in endocytosis /NOTE=Dnm1p; go_component: mitochondrial outer membrane [goid GO:0005741] [evidence IDA] [pmid 11038182]; go_function: GTPase activity [goid GO:0003924] [evidence TAS] [pmid 9891785]; go_process: mitochondrial fission [goid GO:0000266] [evidence IGI,IMP] [pmid 10559943] --- --- --- --- --- --- S0003924 // DNM1 SGDID:S0003924, Chr XII from 147889-150162, Verified ORF // sgd // 11 // --- /// GENSCAN00000017740 // cdna:Genscan chromosome:SGD1:XII:147889:150162:1 // ensembl // 11 // --- /// GENEFINDER00000024853 // cdna:GeneFinder chromosome:SGD1:XII:147889:150162:1 // ensembl // 11 // --- /// YLL001W // cdna:known chromosome:SGD1:XII:147889:150162:1 gene:YLL001W // ensembl // 11 // --- --- No cerevisiae_gene -1.484271656778 1.22407823069321 1.15527002973079 1.30334088938324 1.05132508469357 Max fold change below threshold 4 1.484271656778 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780246_at YPR028W.S1 Membrane protein that interacts with Yip1p to mediate membrane traffic; overexpression results in cell death and accumulation of internal cell membranes; regulates vesicular traffic in stressed cells 1.48415726997475 4214.59045410156 4377.1181640625 YOP1 16192 // vesicle-mediated transport // inferred from mutant phenotype /// 16192 // vesicle-mediated transport // inferred from physical interaction 16021 // integral to membrane // inferred from direct assay 5515 // protein binding // inferred from direct assay 4992.16552734375 5065.54443359375 3363.63647460938 3762.07080078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR028W /GEN=YOP1 /DB_XREF=GI:6325285 /SEG=NC_001148:+623522,624197 /DEF=Ypt Interacting Protein. Regulates vesicular traffic in stressed cells either to facilitate membrane turnover or to decrease unnecessary secretion. /NOTE=Yop1p; go_component: membrane [goid GO:0016020] [evidence IDA] [pmid 11278413]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: membrane organization and biogenesis [goid GO:0016044] [evidence IMP,IPI] [pmid 11278413] --- --- --- --- --- S0006232 // span:37-59,109-131 // numtm:2 S0006232 // YOP1 SGDID:S0006232, Chr XVI from 623524-623574,623708-624199, intron sequence removed, Verified ORF // sgd // 11 // --- /// YPR028W // cdna:known chromosome:SGD1:XVI:623524:624199:1 gene:YPR028W // ensembl // 11 // --- GENEFINDER00000020943 // ensembl // 3 // Cross Hyb Matching Probes No cerevisiae_gene -1.36976889067524 1.0146988127393 -1.16022619517215 -1.48415726997475 -1.32697277422505 Max fold change below threshold 4 1.48415726997475 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774211_at YML028W.S1 Ubiquitous housekeeping thioredoxin peroxidase, reduces reactive oxygen, nitrogen and sulfur species using thioredoxin as hydrogen donor; mediates redox regulation of the nuclear localization of Yap1p; deletion results in mutator phenotype 1.48384451196397 6713.42749023438 6700.13525390625 TSA1 6979 // response to oxidative stress // inferred from mutant phenotype /// 6979 // response to oxidative stress // inferred from direct assay /// 30503 // regulation of cell redox homeostasis // inferred from mutant phenotype /// 30503 // regulation of cell redox homeostasis // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 8379 // thioredoxin peroxidase activity // inferred from mutant phenotype /// 8379 // thioredoxin peroxidase activity // inferred from direct assay 7893.52099609375 8107.21337890625 5319.6416015625 5506.74951171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML028W /GEN=TSA1 /DB_XREF=GI:6323613 /SEG=NC_001145:+220138,220728 /DEF=antioxidant enzyme that provides protection against oxidation systems capable of generating reactive oxygen and sulfur species /NOTE=Tsa1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 8344960]; go_function: thioredoxin peroxidase activity [goid GO:0008379] [evidence TAS] [pmid 8344960]; go_function: thioredoxin peroxidase activity [goid GO:0008379] [evidence IDA,IMP] [pmid 9799566]; go_process: regulation of cell redox homeostasis [goid GO:0030503] [evidence IDA,IMP] [pmid 8344960]; go_process: response to oxidative stress [goid GO:0006979] [evidence IDA,IMP] [pmid 8344960] --- --- --- --- --- AAC49164.1 // span:44-66 // numtm:1 /// S0004490 // span:34-56 // numtm:1 S0004490 // TSA1 SGDID:S0004490, Chr XIII from 220138-220728, Verified ORF // sgd // 11 // --- /// GENSCAN00000018694 // cdna:Genscan chromosome:SGD1:XIII:220138:220728:1 // ensembl // 11 // --- /// GENEFINDER00000021912 // cdna:GeneFinder chromosome:SGD1:XIII:220138:220728:1 // ensembl // 11 // --- /// YML028W // cdna:known chromosome:SGD1:XIII:220138:220728:1 gene:YML028W // ensembl // 11 // --- U24165 // gb // 2 // Cross Hyb Matching Probes No cerevisiae_gene -1.424625523078 1.02707187108494 -1.3544463708248 -1.48384451196397 -1.43342655759006 Max fold change below threshold 4 1.48384451196397 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772684_at YJL154C.S1 Endosomal protein that is a subunit of the membrane-associated retromer complex essential for endosome-to-Golgi retrograde transport; forms a subcomplex with Vps26p and Vps29p that selects cargo proteins for endosome-to-Golgi retrieval 1.48371279026348 525.007629394531 734.318115234375 VPS35 42147 // retrograde transport, endosome to Golgi // inferred from physical interaction /// 45053 // protein-Golgi retention // inferred from mutant phenotype 5768 // endosome // inferred from physical interaction /// 30904 // retromer complex // traceable author statement --- 721.015319824219 485.953430175781 564.061828613281 747.620910644531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL154C /GEN=VPS35 /DB_XREF=GI:6322307 /SEG=NC_001142:-131019,133853 /DEF=Protein involved in vacuolar sorting /NOTE=Vps35p; go_component: endosome [goid GO:0005768] [evidence IPI] [pmid 9700157]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-Golgi retention [goid GO:0045053] [evidence IMP] [pmid 8649377]; go_process: retrograde transport, endosome to Golgi [goid GO:0042147] [evidence IPI] [pmid 9700157] --- --- --- --- --- --- S0003690 // VPS35 SGDID:S0003690, Chr X from 133853-131019, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024022 // cdna:Genscan chromosome:SGD1:X:131019:133853:-1 // ensembl // 11 // --- /// GENEFINDER00000024278 // cdna:GeneFinder chromosome:SGD1:X:131019:133202:-1 // ensembl // 11 // --- /// YJL154C // cdna:known chromosome:SGD1:X:131019:133853:-1 gene:YJL154C // ensembl // 11 // --- --- No cerevisiae_gene -1.37622019961231 -1.48371279026348 1.03393135510828 -1.27825582808324 1.03690017408617 Max fold change below threshold 4 1.48371279026348 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777317_at YKL213C.S1 WD repeat protein required for ubiquitin-mediated protein degradation, forms complex with Cdc48p, plays a role in controlling cellular ubiquitin concentration; also promotes efficient NHEJ in postdiauxic/stationary phase 1.48328013234758 1997.04498291016 1863.64361572266 DOA1 6303 // double-strand break repair via nonhomologous end-joining // inferred from mutant phenotype /// 6511 // ubiquitin-dependent protein catabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1842.77331542969 1746.36218261719 2247.72778320313 1884.51391601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL213C /GEN=DOA1 /DB_XREF=GI:6322636 /SEG=NC_001143:-31961,34108 /DEF=WD repeat protein required for ubiquitin-mediated protein degradation, forms complex with Cdc48p, plays a role in controlling cellular ubiquitin concentration; also promotes efficient NHEJ in postdiauxic/stationary phase /NOTE=Doa1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: double-strand break repair via nonhomologous end-joining [goid GO:0006303] [evidence IMP] [pmid 12399380]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence IMP] [pmid 2111732] --- --- --- --- --- --- S0001696 // DOA1 SGDID:S0001696, Chr XI from 34108-31961, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018259 // cdna:Genscan chromosome:SGD1:XI:31961:34108:-1 // ensembl // 11 // --- /// GENEFINDER00000022957 // cdna:GeneFinder chromosome:SGD1:XI:31961:34108:-1 // ensembl // 11 // --- /// YKL213C // cdna:known chromosome:SGD1:XI:31961:34108:-1 gene:YKL213C // ensembl // 11 // --- --- No cerevisiae_gene -1.48328013234758 -1.05520683725985 1.00068044519611 1.21975273050826 1.02265096864408 Max fold change below threshold 4 1.48328013234758 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777525_at YOR220W.S1 Hypothetical protein 1.48320713742892 5112.67700195313 3898.56518554688 --- --- 5737 // cytoplasm // inferred from direct assay --- 4019.90649414063 5962.35400390625 4263 3777.22387695313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR220W /GEN=STE13 /DB_XREF=GI:6324794 /SEG=NC_001147:+755328,756125 /DEF=Hypothetical ORF /NOTE=Yor220wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005746 // YOR220W SGDID:S0005746, Chr XV from 755328-756125, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017633 // cdna:Genscan chromosome:SGD1:XV:755328:756125:1 // ensembl // 11 // --- /// YOR220W // cdna:known chromosome:SGD1:XV:755328:756125:1 gene:YOR220W // ensembl // 11 // --- --- No cerevisiae_gene -1.16880674721291 1.48320713742892 1.01518711475976 1.06047242795665 -1.06424893654523 Max fold change below threshold 4 1.48320713742892 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779809_at YER179W.S1 Meiosis-specific protein required for repair of double-strand breaks and pairing between homologous chromosomes; homolog of Rad51p and the bacterial RecA protein 1.48208091738837 95.8383445739746 133.326065063477 DMC1 709 // meiotic joint molecule formation // inferred from mutant phenotype /// 7126 // meiosis // inferred from mutant phenotype /// 7131 // meiotic recombination // inferred from mutant phenotype 794 // condensed nuclear chromosome // inferred from direct assay /// 5634 // nucleus // inferred from direct assay 3690 // double-stranded DNA binding // inferred from direct assay /// 3697 // single-stranded DNA binding // inferred from direct assay 139.380676269531 97.0651779174805 94.6115112304688 127.271453857422 0.000732421991415322 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER179W /GEN=DMC1 /DB_XREF=GI:6321027 /SEG=NC_001137:+548416,549512 /DEF=Meiosis-specific protein required for repair of double-strand breaks and pairing between homologous chromosomes; homolog of Rad51p and the bacterial RecA protein /NOTE=Dmc1p; go_component: condensed nuclear chromosome [goid GO:0000794] [evidence IDA] [pmid 1581960]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 7528104]; go_function: double-stranded DNA binding [goid GO:0003690] [evidence IDA] [pmid 11551925]; go_function: single-stranded DNA binding [goid GO:0003697] [evidence IDA] [pmid 11551925]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 1581960]; go_process: meiotic joint molecule formation [goid GO:0000709] [evidence IMP] [pmid 9323140]; go_process: meiotic recombination [goid GO:0007131] [evidence IMP] [pmid 1581960] --- --- --- --- scop // a.140.2.SAP domain // All alpha proteins; LEM/SAP HeH motif; SAP domain; SAP domain // 4.19999980926514 --- S0000981 // DMC1 SGDID:S0000981, Chr V from 548416-548547,548640-549512, intron sequence removed, Verified ORF // sgd // 10 // --- /// GENSCAN00000016958 // cdna:Genscan chromosome:SGD1:V:548841:549512:1 // ensembl // 10 // --- /// GENEFINDER00000019691 // cdna:GeneFinder chromosome:SGD1:V:548847:549512:1 // ensembl // 10 // --- /// YER179W // cdna:known chromosome:SGD1:V:548416:549512:1 gene:YER179W // ensembl // 10 // --- --- No cerevisiae_gene 1.48208091738837 -1.43594932044554 -1.13393535857938 -1.47318940852775 -1.09514484234363 Max fold change below threshold 4 1.48208091738837 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775424_at YFL024C.S1 Component of NuA4, which is an essential histone H4/H2A acetyltransferase complex; homologous to Drosophila Enhancer of Polycomb 1.48081683583716 657.438140869141 633.076751708984 EPL1 6357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 16573 // histone acetylation // inferred from direct assay 123 // histone acetyltransferase complex // inferred from direct assay /// 43189 // H4/H2A histone acetyltransferase complex // inferred from physical interaction 4402 // histone acetyltransferase activity // inferred from direct assay 618.275146484375 601.091064453125 713.785217285156 647.878356933594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL024C /GEN=EPL1 /DB_XREF=GI:14318495 /SEG=NC_001138:-87845,90343 /DEF=Component of NuA4, which is an essential histone H4/H2A acetyltransferase complex; homologous to Drosophila Enhancer of Polycomb /NOTE=Epl1p; go_component: histone acetyltransferase complex [goid GO:0000123] [evidence IDA] [pmid 10911987]; go_function: histone acetyltransferase activity [goid GO:0004402] [evidence IDA] [pmid 10911987]; go_process: histone acetylation [goid GO:0016573] [evidence IDA] [pmid 10911987]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IDA] [pmid 10911987] --- --- --- --- --- --- S0001870 // EPL1 SGDID:S0001870, Chr VI from 90343-87845, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018573 // cdna:GeneFinder chromosome:SGD1:VI:87845:90343:-1 // ensembl // 11 // --- /// GENSCAN00000023222 // cdna:Genscan chromosome:SGD1:VI:87845:90343:-1 // ensembl // 11 // --- /// YFL024C // cdna:known chromosome:SGD1:VI:87845:90343:-1 gene:YFL024C // ensembl // 11 // --- --- No cerevisiae_gene 1.48081683583716 -1.02858815086011 -1.01921008707911 1.1544782631873 1.04788031771542 Max fold change below threshold 4 1.48081683583716 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770419_at YER013W.S1 DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase, associates with lariat intermediates before the second catalytic step of splicing; mediates ATP-dependent mRNA release from the spliceosome and unwinds RNA duplexes 1.48014310164351 611.839172363281 904.076202392578 PRP22 391 // U2-type spliceosome dissembly // traceable author statement 5681 // spliceosome complex // traceable author statement 4004 // ATP-dependent RNA helicase activity // traceable author statement /// 31202 // RNA splicing factor activity, transesterification mechanism // traceable author statement 891.528747558594 621.352294921875 602.326049804688 916.623657226563 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER013W /GEN=PRP22 /DB_XREF=GI:6320850 /SEG=NC_001137:+178840,182277 /DEF=RNA-dependent ATPase/ATP-dependent RNA helicase in the DEAH-box family, associates with the lariat intermediate before the second catalytic step of splicing /NOTE=Prp22p; go_component: spliceosome complex [goid GO:0005681] [evidence TAS] [pmid 9476892]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 9476892]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence TAS] [pmid 9476892]; go_process: U2-type spliceosome dissembly [goid GO:0000391] [evidence TAS] --- --- --- --- scop // a.1.2.Fumarate reductase/Succinate dehydogenase iron-sulfur prot // All alpha proteins; Globin-like; alpha-helical ferredoxin; Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain // 5.90000009536743 /// scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 4.30000019073486 --- S0000815 // PRP22 SGDID:S0000815, Chr V from 178840-182277, Verified ORF // sgd // 11 // --- /// GENSCAN00000016815 // cdna:Genscan chromosome:SGD1:V:178840:182277:1 // ensembl // 11 // --- /// GENEFINDER00000019643 // cdna:GeneFinder chromosome:SGD1:V:178840:182277:1 // ensembl // 11 // --- /// YER013W // cdna:known chromosome:SGD1:V:178840:182277:1 gene:YER013W // ensembl // 11 // --- --- No cerevisiae_gene -1.36599012774566 -1.43482007686266 -1.16112460223187 -1.48014310164351 1.02814817776397 Max fold change below threshold 4 1.48014310164351 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769670_at YKL208W.S1 Subunit of complex involved in processing of the 3' end of cytochrome b pre-mRNA; involved in RNA splicing 1.48008467910541 284.860214233398 258.734474182129 CBT1 6397 // mRNA processing // inferred from direct assay /// 6397 // mRNA processing // inferred from mutant phenotype /// 17004 // cytochrome complex assembly // inferred from direct assay /// 17004 // cytochrome complex assembly // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay --- 243.948593139648 251.818481445313 317.901947021484 273.520355224609 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL208W /GEN=CBT1 /DB_XREF=GI:6322641 /SEG=NC_001143:+47158,47973 /DEF=Subunit of complex involved in processing of the 3' end of cytochrome b pre-mRNA /NOTE=Cbt1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cytochrome biogenesis [goid GO:0017004] [evidence IDA,IMP] [pmid 9339340]; go_process: mRNA processing [goid GO:0006397] [evidence IDA,IMP] [pmid 9339340] --- --- --- --- --- --- S0001691 // CBT1 SGDID:S0001691, Chr XI from 47158-47973, Verified ORF // sgd // 11 // --- /// GENSCAN00000018263 // cdna:Genscan chromosome:SGD1:XI:47158:47973:1 // ensembl // 11 // --- /// YKL208W // cdna:known chromosome:SGD1:XI:47158:47973:1 gene:YKL208W // ensembl // 11 // --- --- No cerevisiae_gene 1.48008467910541 1.03226043735025 1.22164089691798 1.30315138501127 1.12122128561747 Max fold change below threshold 4 1.48008467910541 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780211_at YEL027W.S1 Proteolipid subunit of the vacuolar H(+)-ATPase V0 sector (subunit c; dicyclohexylcarbodiimide binding subunit); required for vacuolar acidification and important for copper and iron metal ion homeostasis 1.48007292740961 5337.12036132813 6008.21313476563 CUP5 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6878 // copper ion homeostasis // inferred from mutant phenotype /// 6879 // iron ion homeostasis // inferred from mutant phenotype /// 6897 // endocytosis // inferred from mutant phenotype /// 7033 // vacuole organization and biogenesis // inferred from mutant phenotype /// 7035 // vacuolar acidification // traceable author statement /// 15992 // proton transport // traceable author statement 220 // hydrogen-transporting ATPase V0 domain // traceable author statement /// 16021 // integral to membrane // inferred from direct assay 15078 // hydrogen ion transporter activity // traceable author statement 6844.857421875 6049.56494140625 4624.67578125 5171.56884765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL027W /GEN=CUP5 /DB_XREF=GI:6320808 /SEG=NC_001137:+100769,101251 /DEF=Proteolipid subunit of the vacuolar H(+)-ATPase V0 sector (subunit c; dicyclohexylcarbodiimide binding subunit); required for vacuolar acidification and important for copper and iron metal ion homeostasis /NOTE=Cup5p; go_component: hydrogen-transporting ATPase V0 domain [goid GO:0000220] [evidence TAS] [pmid 9442887]; go_function: hydrogen ion transporter activity [goid GO:0015078] [evidence TAS] [pmid 12482875]; go_process: copper ion homeostasis [goid GO:0006878] [evidence IMP] [pmid 9434348]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 2145283]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IMP] [pmid 9434348]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 2145283]; go_process: proton transport [goid GO:0015992] [evidence TAS] [pmid 12482875]; go_process: vacuolar acidification [goid GO:0007035] [evidence TAS] [pmid 9442887]; go_process: vacuole organization and biogenesis [goid GO:0007033] [evidence IMP] [pmid 2145283] --- --- --- --- --- CAA33249.1 // span:7-29,54-76,89-111,126-148 // numtm:4 /// S0000753 // span:7-29,54-76,89-111,126-148 // numtm:4 S0000753 // CUP5 SGDID:S0000753, Chr V from 100769-101251, Verified ORF // sgd // 11 // --- /// X15155 // S.cerevisiae VATPYPL mRNA for vacuolar proteolipid subunit for ATPase. // gb // 11 // --- /// YEL027W // cdna:known chromosome:SGD1:V:100769:101251:1 gene:YEL027W // ensembl // 11 // --- --- No cerevisiae_gene -1.25071960951314 -1.13146275611084 -1.22287793559679 -1.48007292740961 -1.32355531242267 Max fold change below threshold 4 1.48007292740961 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778044_at YGR203W.S1 Probable protein tyrosine phosphatase of the CDC25-like phosphatase family, which includes Mih1p; potential ortholog S. pombe Ibp1 may regulate DNA replication 1.4799479822496 209.443618774414 199.917175292969 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4725 // protein tyrosine phosphatase activity // inferred from sequence similarity /// 4725 // protein tyrosine phosphatase activity // non-traceable author statement /// 16791 // phosphoric monoester hydrolase activity // inferred from sequence similarity 193.826095581055 132.034698486328 286.8525390625 206.008255004883 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR203W /GEN=PCT1 /DB_XREF=GI:6321642 /SEG=NC_001139:+905240,905686 /DEF=Probable protein tyrosine phosphatase of the CDC25-like phosphatase family, which includes Mih1p; potential ortholog S. pombe Ibp1 may regulate DNA replication /NOTE=Ygr203wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: phosphoric monoester hydrolase activity [goid GO:0016791] [evidence ISS] [pmid 9733650]; go_function: protein tyrosine phosphatase activity [goid GO:0004725] [evidence ISS] [pmid 14508607]; go_function: protein tyrosine phosphatase activity [goid GO:0004725] [evidence NAS] [pmid 9818190]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003435 // YGR203W SGDID:S0003435, Chr VII from 905242-905688, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000021557 // cdna:GeneFinder chromosome:SGD1:VII:905242:905688:1 // ensembl // 11 // --- /// YGR203W // cdna:known chromosome:SGD1:VII:905242:905688:1 gene:YGR203W // ensembl // 11 // --- --- No cerevisiae_gene 1.25087677022011 -1.46799362442688 1.4607966078091 1.4799479822496 1.06285097673411 Max fold change below threshold 4 1.4799479822496 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774633_at YKL094W.S1 Protein of unknown function, localizes to lipid particles 1.47990167179671 4011.28686523438 2899.52648925781 YJU3 --- 5737 // cytoplasm // inferred from direct assay /// 5811 // lipid particle // inferred from direct assay 17171 // serine hydrolase activity // inferred from direct assay 2966.7861328125 4390.5517578125 3632.02197265625 2832.26684570313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL094W /GEN=YJU3 /DB_XREF=GI:6322756 /SEG=NC_001143:+262994,263935 /DEF=Protein of unknown function, localizes to lipid particles /NOTE=Yju3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 10515935]; go_function: serine hydrolase activity [goid GO:0017171] [evidence IDA] [pmid 14645503]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001577 // YJU3 SGDID:S0001577, Chr XI from 262994-263935, Verified ORF // sgd // 11 // --- /// GENSCAN00000018346 // cdna:Genscan chromosome:SGD1:XI:262994:263935:1 // ensembl // 11 // --- /// GENEFINDER00000022941 // cdna:GeneFinder chromosome:SGD1:XI:262994:263935:1 // ensembl // 11 // --- /// YKL094W // cdna:known chromosome:SGD1:XI:262994:263935:1 gene:YKL094W // ensembl // 11 // --- --- No cerevisiae_gene -1.00928659989449 1.47990167179671 1.03304258178683 1.22422777040997 -1.04749527302255 Max fold change below threshold 4 1.47990167179671 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774375_at YGR209C.S1 Cytoplasmic thioredoxin isoenzyme of the thioredoxin system which protects cells against both oxidative and reductive stress, forms LMA1 complex with Pbi2p, acts as a cofactor for Tsa1p, required for ER-Golgi transport and vacuole inheritance 1.47984990089485 4467.90710449219 3356.68212890625 TRX2 11 // vacuole inheritance // inferred from mutant phenotype /// 103 // sulfate assimilation // inferred from genetic interaction /// 6261 // DNA-dependent DNA replication // inferred from mutant phenotype /// 6888 // ER to Golgi transport // inferred from direct assay /// 6890 // retrograde transport, Golgi to ER // inferred from direct assay /// 6979 // response to oxidative stress // inferred from sequence similarity /// 30503 // regulation of cell redox homeostasis // traceable author statement /// 42144 // vacuole fusion, non-autophagic // inferred from direct assay 324 // vacuole (sensu Fungi) // inferred from physical interaction /// 5829 // cytosol // inferred from direct assay 30508 // thiol-disulfide exchange intermediate activity // inferred from sequence similarity 3680.64111328125 5446.79638671875 3489.01782226563 3032.72314453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR209C /GEN=TRX2 /DB_XREF=GI:6321648 /SEG=NC_001139:-912916,913230 /DEF=thioredoxin /NOTE=Trx2p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 8603912]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IPI] [pmid 9657146]; go_function: thiol-disulfide exchange intermediate activity [goid GO:0030508] [evidence ISS] [pmid 1988444]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence IMP] [pmid 7929110]; go_process: regulation of cell redox homeostasis [goid GO:0030503] [evidence TAS] [pmid 11169096]; go_process: response to oxidative stress [goid GO:0006979] [evidence ISS] [pmid 1988444]; go_process: vacuole fusion, non-autophagic [goid GO:0042144] [evidence IDA] [pmid 9657146]; go_process: vacuole inheritance [goid GO:0000011] [evidence IMP] [pmid 8603912] --- --- --- --- --- --- S0003441 // TRX2 SGDID:S0003441, Chr VII from 913232-912918, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019503 // cdna:Genscan chromosome:SGD1:VII:912918:913232:-1 // ensembl // 11 // --- /// GENEFINDER00000021545 // cdna:GeneFinder chromosome:SGD1:VII:912918:913232:-1 // ensembl // 11 // --- /// YGR209C // cdna:known chromosome:SGD1:VII:912918:913232:-1 gene:YGR209C // ensembl // 11 // --- --- No cerevisiae_gene -1.38064030936207 1.47984990089485 -1.16417044655049 -1.05492184356089 -1.21364230688791 Max fold change below threshold 4 1.47984990089485 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771686_at YIR006C.S1 Part of actin cytoskeleton-regulatory complex Pan1p-Sla1p-End3p, associates with actin patches on the cell cortex; promotes protein-protein interactions essential for endocytosis; previously thought to be a subunit of poly(A) ribonuclease 1.47952183470603 2109.30749511719 1676.51593017578 PAN1 147 // actin cortical patch assembly // traceable author statement /// 910 // cytokinesis // inferred from mutant phenotype /// 6897 // endocytosis // inferred from mutant phenotype /// 7120 // axial bud site selection // inferred from mutant phenotype /// 7121 // bipolar bud site selection // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay /// 30479 // actin cortical patch // inferred from direct assay 30674 // protein binding, bridging // inferred from physical interaction 1680.32141113281 1957.62158203125 2260.99340820313 1672.71044921875 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR006C /GEN=PAN1 /DB_XREF=GI:6322196 /SEG=NC_001141:-365463,369905 /DEF=Part of actin cytoskeleton-regulatory complex Pan1p-Sla1p-End3p, associates with actin patches on the cell cortex; promotes protein-protein interactions essential for endocytosis; previously thought to be a subunit of poly(A) ribonuclease /NOTE=Pan1p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10652251]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 11914276]; go_function: protein binding, bridging [goid GO:0030674] [evidence IPI] [pmid 11792548]; go_process: actin cortical patch assembly [goid GO:0000147] [evidence TAS] [pmid 10652251]; go_process: axial budding [goid GO:0007120] [evidence IMP] [pmid 10652251]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 10652251]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251] --- --- --- --- --- --- S0001445 // PAN1 SGDID:S0001445, Chr IX from 369905-365463, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016481 // cdna:Genscan chromosome:SGD1:IX:365463:369905:-1 // ensembl // 11 // --- /// GENEFINDER00000019002 // cdna:GeneFinder chromosome:SGD1:IX:365463:369905:-1 // ensembl // 11 // --- /// YIR006C // cdna:known chromosome:SGD1:IX:365463:369905:-1 gene:YIR006C // ensembl // 11 // --- --- No cerevisiae_gene -1.47952183470603 1.16502805300296 -1.03815084885837 1.34557197999331 -1.00455007734161 Max fold change below threshold 4 1.47952183470603 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775481_at YNL164C.S1 Component of the BUB2-dependent spindle checkpoint pathway, interacts with Bfa1p and functions upstream of Bub2p and Bfa1p 1.47927584238551 149.582748413086 221.380561828613 IBD2 7094 // mitotic spindle checkpoint // inferred from genetic interaction /// 7094 // mitotic spindle checkpoint // inferred from mutant phenotype 5634 // nucleus // non-traceable author statement --- 201.511245727539 136.222900390625 162.942596435547 241.249877929688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL164C /GEN=IBD2 /DB_XREF=GI:6324165 /SEG=NC_001146:-325265,326320 /DEF=Component of the BUB2-dependent spindle checkpoint pathway, interacts with Bfa1p and functions upstream of Bub2p and Bfa1p /NOTE=Ibd2p; go_component: nucleus [goid GO:0005634] [evidence NAS] [pmid 12072457]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitotic spindle checkpoint [goid GO:0007094] [evidence IGI,IMP] [pmid 12072457] --- --- --- --- --- --- S0005108 // IBD2 SGDID:S0005108, Chr XIV from 326320-325265, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019908 // cdna:Genscan chromosome:SGD1:XIV:325265:326320:-1 // ensembl // 11 // --- /// YNL164C // cdna:known chromosome:SGD1:XIV:325265:326320:-1 gene:YNL164C // ensembl // 11 // --- GENEFINDER00000020577 // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene -1.24865027490889 -1.47927584238551 1.21701512186549 -1.2367008390421 1.19720304967931 Max fold change below threshold 4 1.47927584238551 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774886_at YGR222W.S1 Protein required for splicing of the COX1 intron AI5 beta; also specifically required, together with Pet122p and Pet494p, for translation of the COX3 mRNA; located in the mitochondrial inner membrane 1.47917207250532 333.766525268555 518.288665771484 PET54 372 // Group I intron splicing // inferred from genetic interaction /// 6412 // protein biosynthesis // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay /// 5759 // mitochondrial matrix // inferred from direct assay 3723 // RNA binding // non-traceable author statement /// 45182 // translation regulator activity // inferred from mutant phenotype 472.143798828125 348.338409423828 319.194641113281 564.433532714844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR222W /GEN=PET54 /DB_XREF=GI:6321661 /SEG=NC_001139:+939924,940805 /DEF=Protein required for splicing of the COX1 intron AI5 beta; also specifically required, together with Pet122p and Pet494p, for translation of the COX3 mRNA; located in the mitochondrial inner membrane /NOTE=Pet54p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 8389363]; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 8389363]; go_function: RNA binding [goid GO:0003723] [evidence NAS] [pmid 9341683]; go_function: translation regulator activity [goid GO:0045182] [evidence IMP] [pmid 2548921]; go_process: Group I intron splicing [goid GO:0000372] [evidence IGI] [pmid 9341683]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP] [pmid 2548921] --- --- --- --- --- --- S0003454 // PET54 SGDID:S0003454, Chr VII from 939926-940807, Verified ORF // sgd // 11 // --- /// GENSCAN00000019513 // cdna:Genscan chromosome:SGD1:VII:939926:940807:1 // ensembl // 11 // --- /// GENEFINDER00000021751 // cdna:GeneFinder chromosome:SGD1:VII:940328:940807:1 // ensembl // 10 // --- /// YGR222W // cdna:known chromosome:SGD1:VII:939926:940807:1 gene:YGR222W // ensembl // 11 // --- --- No cerevisiae_gene 1.46367187358608 -1.35541699122149 1.1072076595441 -1.47917207250532 1.19546954575234 Max fold change below threshold 4 1.47917207250532 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777353_at YLR335W.S1 Protein involved in nucleocytoplasmic transport, binds to either the nucleoplasmic or cytoplasmic faces of the nuclear pore complex depending on Ran-GTP levels; also has a role in chromatin organization 1.47885838897687 1957.18322753906 1458.40924072266 NUP2 6342 // chromatin silencing // inferred from mutant phenotype /// 6406 // mRNA-nucleus export // traceable author statement /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6999 // nuclear pore organization and biogenesis // traceable author statement 5643 // nuclear pore // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 5198 // structural molecule activity // traceable author statement 1374.35559082031 2032.47729492188 1881.88916015625 1542.462890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR335W /GEN=NUP2 /DB_XREF=GI:6323367 /SEG=NC_001144:+797430,799592 /DEF=Subunit of the nuclear pore complex (NPC), localizes to the nuclear side of the NPC and is anchored there through binding to Nup60p, binds Srp1p and is required for bidirectional transport of Srp1p across the NPC /NOTE=Nup2p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence TAS] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0004327 // NUP2 SGDID:S0004327, Chr XII from 797430-799592, Verified ORF // sgd // 11 // --- /// GENSCAN00000018075 // cdna:Genscan chromosome:SGD1:XII:797430:799592:1 // ensembl // 11 // --- /// GENEFINDER00000024851 // cdna:GeneFinder chromosome:SGD1:XII:797430:799592:1 // ensembl // 11 // --- /// YLR335W // cdna:known chromosome:SGD1:XII:797430:799592:1 gene:YLR335W // ensembl // 11 // --- --- No cerevisiae_gene -1.07620008507344 1.47885838897687 -1.02673854288155 1.3692883943034 1.12231717972228 Max fold change below threshold 4 1.47885838897687 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772250_at YML012W.S1 Protein that forms a heterotrimeric complex with Erp1, Erp2p, and Emp24, member of the p24 family involved in endoplasmic reticulum to Golgi transport 1.47860185088585 2094.44732666016 2709.0498046875 ERV25 6888 // ER to Golgi transport // inferred from physical interaction 30138 // COPII-coated vesicle // inferred from direct assay --- 2759.44702148438 1866.25427246094 2322.64038085938 2658.65258789063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML012W /GEN=ERV25 /DB_XREF=GI:6323630 /SEG=NC_001145:+246116,246751 /DEF=Protein that forms a heterotrimeric comnplex with Erp1, Erp2p, and Emp24, member of the p24 family involved in endoplasmic reticulum to Golgi transport /NOTE=Erv25p; go_component: COPII-coated vesicle [goid GO:0030138] [evidence IDA] [pmid 11157978]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IPI] [pmid 11157978] --- --- --- --- --- S0004473 // span:179-201 // numtm:1 S0004473 // ERV25 SGDID:S0004473, Chr XIII from 246116-246751, Verified ORF // sgd // 11 // --- /// GENSCAN00000018707 // cdna:Genscan chromosome:SGD1:XIII:246116:246751:1 // ensembl // 11 // --- /// GENEFINDER00000022075 // cdna:GeneFinder chromosome:SGD1:XIII:246116:246751:1 // ensembl // 11 // --- /// YML012W // cdna:known chromosome:SGD1:XIII:246116:246751:1 gene:YML012W // ensembl // 11 // --- --- No cerevisiae_gene 1.00608483198034 -1.47860185088585 1.05231194861049 -1.18806468888799 -1.03791184829971 Max fold change below threshold 4 1.47860185088585 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773332_at YBR037C.S1 Copper-binding protein of the mitochondrial inner membrane, required for cytochrome c oxidase activity and respiration; may function to deliver copper to cytochrome c oxidase; has similarity to thioredoxins 1.47800583905546 1196.43981933594 892.64404296875 SCO1 6461 // protein complex assembly // inferred from mutant phenotype /// 6825 // copper ion transport // inferred from genetic interaction /// 6825 // copper ion transport // inferred from sequence similarity /// 6980 // redox signal response // inferred from sequence similarity 5743 // mitochondrial inner membrane // inferred from direct assay 5507 // copper ion binding // inferred from direct assay /// 8379 // thioredoxin peroxidase activity // inferred from sequence similarity 865.8359375 1113.16906738281 1279.71057128906 919.4521484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR037C /GEN=SCO1 /DB_XREF=GI:6319511 /SEG=NC_001134:-310526,311413 /DEF=inner mitochondrial membrane protein /NOTE=Sco1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 1944230]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: copper ion transport [goid GO:0006825] [evidence IGI,ISS] [pmid 8662933]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP] [pmid 2835635] --- --- --- --- --- AAA34533.1 // span:53-75,130-152,167-189,196-215,246-268,288-305,325-347,386-403 // numtm:8 S0000241 // SCO1 SGDID:S0000241, Chr II from 311451-310564, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021169 // cdna:Genscan chromosome:SGD1:II:310564:311451:-1 // ensembl // 11 // --- /// GENEFINDER00000022117 // cdna:GeneFinder chromosome:SGD1:II:310564:311451:-1 // ensembl // 11 // --- /// YBR037C // cdna:known chromosome:SGD1:II:310564:311451:-1 gene:YBR037C // ensembl // 11 // --- L24113 // gb // 1 // Cross Hyb Matching Probes No cerevisiae_gene -1.02064800654326 1.2856581936261 1.09225287497631 1.47800583905546 1.06192421521831 Max fold change below threshold 4 1.47800583905546 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770409_at YER137C.S1 Hypothetical protein 1.47791028895672 629.962310791016 848.806579589844 --- --- --- --- 915.78759765625 640.274291992188 619.650329589844 781.825561523438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER137C /GEN=GDI1 /DB_XREF=GI:6320984 /SEG=NC_001137:-441369,441815 /DEF=Hypothetical ORF /NOTE=Yer137cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000939 // YER137C SGDID:S0000939, Chr V from 441815-441369, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000019655 // cdna:GeneFinder chromosome:SGD1:V:441369:441815:-1 // ensembl // 11 // --- /// YER137C // cdna:known chromosome:SGD1:V:441369:441815:-1 gene:YER137C // ensembl // 11 // --- YER137W-A // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene -1.01118456664589 -1.4303051193994 -1.20182869548612 -1.47791028895672 -1.17134517304829 Max fold change below threshold 4 1.47791028895672 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775823_at YMR021C.S1 Copper-sensing transcription factor involved in regulation of genes required for high affinity copper transport 1.47753886568292 583.65266418457 688.759338378906 MAC1 6876 // cadmium ion homeostasis // inferred from mutant phenotype /// 42176 // regulation of protein catabolism // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from direct assay 3704 // specific RNA polymerase II transcription factor activity // inferred from direct assay 635.969970703125 502.320648193359 664.984680175781 741.548706054688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR021C /GEN=MAC1 /DB_XREF=GI:6323663 /SEG=NC_001145:-317164,318417 /DEF=metal-binding transcriptional activator /NOTE=Mac1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8262047]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IDA] [pmid 9726991]; go_process: cadmium ion homeostasis [goid GO:0006876] [evidence IMP] [pmid 9188496]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IDA] [pmid 9726991]; go_process: regulation of protein catabolism [goid GO:0042176] [evidence IMP] [pmid 12011036] --- --- --- --- --- --- S0004623 // MAC1 SGDID:S0004623, Chr XIII from 318417-317164, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018734 // cdna:Genscan chromosome:SGD1:XIII:317164:318417:-1 // ensembl // 11 // --- /// GENEFINDER00000021996 // cdna:GeneFinder chromosome:SGD1:XIII:317164:318294:-1 // ensembl // 11 // --- /// YMR021C // cdna:known chromosome:SGD1:XIII:317164:318417:-1 gene:YMR021C // ensembl // 11 // --- --- No cerevisiae_gene -1.13812619850393 -1.26606376423196 1.47753886568292 1.04562276649726 1.16601213927575 Max fold change below threshold 4 1.47753886568292 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780119_at YOR116C.S1 RNA polymerase III subunit C160, part of core enzyme; similar to bacterial beta-prime subunit 1.4773806198656 984.037170410156 1404.14678955078 RPO31 6383 // transcription from RNA polymerase III promoter // traceable author statement 5666 // DNA-directed RNA polymerase III complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 1380.44519042969 934.386962890625 1033.68737792969 1427.84838867188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR116C /GEN=RPO31 /DB_XREF=GI:6324690 /SEG=NC_001147:-539763,544145 /DEF=RNA polymerase III large subunit /NOTE=Rpo31p; go_component: DNA-directed RNA polymerase III complex [goid GO:0005666] [evidence TAS] [pmid 8246845]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 8246845]; go_process: transcription from Pol III promoter [goid GO:0006383] [evidence TAS] --- --- --- --- --- --- S0005642 // RPO31 SGDID:S0005642, Chr XV from 544145-539763, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017547 // cdna:Genscan chromosome:SGD1:XV:539763:544145:-1 // ensembl // 11 // --- /// GENEFINDER00000022564 // cdna:GeneFinder chromosome:SGD1:XV:539763:543974:-1 // ensembl // 11 // --- /// YOR116C // cdna:known chromosome:SGD1:XV:539763:544145:-1 gene:YOR116C // ensembl // 11 // --- --- No cerevisiae_gene 1.01740762589062 -1.4773806198656 -1.2067939879103 -1.33545714101153 1.03433906581067 Max fold change below threshold 4 1.4773806198656 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770173_at YDL229W.S1 Cytoplasmic ATPase that is a ribosome-associated molecular chaperone; may be involved in the folding of newly-synthesized polypeptide chains; member of the heat shock protein 70 (HSP70) family; homolog of SSB1 /// Cytoplasmic ATPase that is a ribosome-associated molecular chaperone; may be involved in the folding of newly-synthesized polypeptide chains; member of the heat shock protein 70 (HSP70) family; interacts with the phosphatase subunit Reg1p 1.47660452720679 3467.45300292969 3617.31103515625 SSB2 /// SSB1 6412 // protein biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5844 // polysome // traceable author statement /// 5625 // soluble fraction // inferred from direct assay 16887 // ATPase activity // inferred from direct assay /// 51082 // unfolded protein binding // inferred from sequence similarity /// 51082 // unfolded protein binding // traceable author statement 3993.81689453125 3798.55151367188 3136.3544921875 3240.80517578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL229W /GEN=SSB1 /DB_XREF=GI:6319972 /SEG=NC_001136:+44066,45907 /DEF=Stress-Seventy Subfamily B; involved in translation, perhaps by guiding the nascent chain through the ribosome /NOTE=Ssb1p; go_component: polysome [goid GO:0005844] [evidence TAS] [pmid 8336673]; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 11746603]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 9860955]; go_function: chaperone activity [goid GO:0003754] [evidence TAS] [pmid 8336673]; go_function: chaperone activity [goid GO:0003754] [evidence ISS] [pmid 9860955]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 8336673] --- --- --- --- --- --- S0002388 // SSB1 SGDID:S0002388, Chr IV from 44066-45907, Verified ORF // sgd // 11 // --- /// M25395 // Yeast (S.cerevisiae) heat shock protein 70 (YG101, SSB1) mRNA, complete cds. // gb // 11 // --- /// GENEFINDER00000023818 // cdna:GeneFinder chromosome:SGD1:IV:44066:45907:1 // ensembl // 11 // --- /// GENSCAN00000024931 // cdna:Genscan chromosome:SGD1:IV:44066:45907:1 // ensembl // 11 // --- /// YDL229W // cdna:known chromosome:SGD1:IV:44066:45907:1 gene:YDL229W // ensembl // 11 // --- YDL228C // ensembl // 11 // Negative Strand Matching Probes No cerevisiae_gene 1.19510835658196 -1.05140522121566 -1.47660452720679 -1.27339460653432 -1.23235328194898 Max fold change below threshold 4 1.47660452720679 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774161_at YOR122C.S1 Profilin, actin- and phosphatidylinositol 4,5-bisphosphate-binding protein, plays a role in cytoskeleton organization, required for normal timing of actin polymerization in response to thermal stress; localizes to plasma membrane and cytosol 1.47592014511213 5155.56909179688 5130.6923828125 PFY1 6970 // response to osmotic stress // inferred from mutant phenotype /// 7120 // axial bud site selection // inferred from mutant phenotype /// 7121 // bipolar bud site selection // inferred from mutant phenotype /// 8154 // actin polymerization and/or depolymerization // traceable author statement /// 45010 // actin nucleation // traceable author statement /// 46907 // intracellular transport // inferred from genetic interaction 142 // contractile ring (sensu Saccharomyces) // inferred from direct assay /// 30478 // actin cap // inferred from physical interaction 3785 // actin monomer binding // traceable author statement 5869.52001953125 5863.35498046875 4447.783203125 4391.86474609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR122C /GEN=PFY1 /DB_XREF=GI:6324696 /SEG=NC_001147:-552298,552887 /DEF=profilin (actin-binding protein) /NOTE=Pfy1p; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IPI] [pmid 10652251]; go_component: contractile ring (sensu Saccharomyces) [goid GO:0000142] [evidence IDA] [pmid 10652251]; go_function: actin monomer binding [goid GO:0003785] [evidence TAS] [pmid 9153752]; go_process: actin polymerization and/or depolymerization [goid GO:0008154] [evidence TAS] [pmid 10652251]; go_process: axial budding [goid GO:0007120] [evidence IMP] [pmid 10652251]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251]; go_process: response to osmotic stress [goid GO:0006970] [evidence IMP] [pmid 10652251] --- --- --- --- --- --- S0005648 // PFY1 SGDID:S0005648, Chr XV from 552887-552875,552665-552298, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// Y00469 // Yeast mRNA for profilin. // gb // 11 // --- /// YOR122C // cdna:known chromosome:SGD1:XV:552298:552887:-1 gene:YOR122C // ensembl // 11 // --- --- No cerevisiae_gene -1.47592014511213 -1.00105145246758 -1.29162586273849 -1.31965065550123 -1.33645281876036 Max fold change below threshold 4 1.47592014511213 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774240_at YGR059W.S1 a sporulation-specific homologue of the yeast CDC3/10/11/12 family of bud neck microfilament genes; regulated by ABFI; septin protein involved in sporulation 1.47544842390231 118.88537979126 165.728607177734 SPR3 753 // cellular morphogenesis during conjugation with cellular fusion // traceable author statement /// 902 // cellular morphogenesis // traceable author statement /// 7047 // cell wall organization and biogenesis // traceable author statement /// 30476 // spore wall assembly (sensu Fungi) // traceable author statement 144 // septin ring (sensu Saccharomyces) // traceable author statement /// 5619 // spore wall (sensu Fungi) // traceable author statement /// 5628 // prospore membrane // traceable author statement 5200 // structural constituent of cytoskeleton // traceable author statement 153.367309570313 133.824523925781 103.946235656738 178.089904785156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR059W /GEN=SPR3 /DB_XREF=GI:6321496 /SEG=NC_001139:+607565,609103 /DEF=a sporulation-specific homologue of the yeast CDC3/10/11/12 family of bud neck microfilament genes; regulated by ABFI /NOTE=Spr3p; go_component: prospore membrane [goid GO:0005628] [evidence TAS] [pmid 8791410]; go_component: septin ring (sensu Saccharomyces) [goid GO:0000144] [evidence TAS] [pmid 8791410]; go_component: spore wall (sensu Fungi) [goid GO:0005619] [evidence TAS] [pmid 8791410]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence TAS] [pmid 8791410]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence TAS] [pmid 8791410]; go_process: cellular morphogenesis [goid GO:0000902] [evidence TAS] [pmid 8791410]; go_process: cellular morphogenesis during conjugation with cellular fusion [goid GO:0000753] [evidence TAS] [pmid 8791410]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence TAS] [pmid 8791410] --- --- --- --- --- --- S0003291 // SPR3 SGDID:S0003291, Chr VII from 607567-609105, Verified ORF // sgd // 11 // --- /// GENSCAN00000019387 // cdna:Genscan chromosome:SGD1:VII:607567:609105:1 // ensembl // 11 // --- /// YGR059W // cdna:known chromosome:SGD1:VII:607567:609105:1 gene:YGR059W // ensembl // 11 // --- --- No cerevisiae_gene 1.19831769322302 -1.14603291736999 -1.06322448847472 -1.47544842390231 1.16119859756365 Max fold change below threshold 4 1.47544842390231 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776764_at YAL037W.S1 Hypothetical protein 1.47516541941427 50.5125045776367 47.4156513214111 --- --- --- --- 45.0244026184082 44.8838691711426 56.1411399841309 49.8069000244141 0.00195312988944352 0.0239257998764515 0.018554700538516 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL037W /GEN=CDC19 /DB_XREF=GI:6319280 /SEG=NC_001133:+74023,74826 /DEF=Hypothetical ORF /NOTE=Yal037wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000035 // YAL037W SGDID:S0000035, Chr I from 74021-74824, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020345 // cdna:Genscan chromosome:SGD1:I:74021:74824:1 // ensembl // 11 // --- /// YAL037W // cdna:known chromosome:SGD1:I:74021:74824:1 gene:YAL037W // ensembl // 11 // --- GENEFINDER00000018186 // ensembl // 2 // Cross Hyb Matching Probes No cerevisiae_gene 1.47516541941427 -1.00313104573783 -1.05942290784684 1.24690471653649 1.10622011904386 Max fold change below threshold 4 1.47516541941427 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1778419_at SPAC57A10.12c.S1 --- 1.47507081830282 --- --- --- --- 10.4353218078613 7.07445478439331 8.55971813201904 7.67488956451416 0.366210997104645 0.171387001872063 0.0805663987994194 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC57A10.12c /GEN=ura3 /DEF=dihydroorotate dehydrogenase --- --- --- --- --- --- X65114 // S.pombe mRNA for dihydroorotate dehydrogenase. // gb // 11 // --- /// SPAC57A10.12c // |ura3||dihydroorotate dehydrogenase Ura3|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.01597490017572 -1.47507081830282 -1.25362109879857 -1.21911979424022 -1.35967061416888 Max fold change below threshold 4 1.47507081830282 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775853_at YHR142W.S1 Protein of unknown function, involved in chitin biosynthesis by regulating Chs3p export from the ER 1.47503476833988 774.892517089844 1200.74945068359 CHS7 6038 // cell wall chitin biosynthesis // inferred from mutant phenotype /// 6457 // protein folding // inferred from mutant phenotype /// 6888 // ER to Golgi transport // inferred from direct assay 5789 // endoplasmic reticulum membrane // inferred from direct assay --- 1111.23901367188 753.364624023438 796.42041015625 1290.25988769531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR142W /GEN=CHS7 /DB_XREF=GI:6321935 /SEG=NC_001140:+383539,384489 /DEF=The seventh gene identified that is involved in chitin synthesis; involved in Chs3p export from the ER /NOTE=Chs7p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 10366589]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IDA] [pmid 10366589]; go_process: cell wall chitin biosynthesis [goid GO:0006038] [evidence IMP] [pmid 10366589] --- --- --- --- --- S0001184 // span:63-85,98-115,130-152,164-186,206-228,233-255,270-289 // numtm:7 S0001184 // CHS7 SGDID:S0001184, Chr VIII from 383540-384490, Verified ORF // sgd // 11 // --- /// YHR142W // cdna:known chromosome:SGD1:VIII:383540:384490:1 gene:YHR142W // ensembl // 11 // --- GENEFINDER00000020295 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.19687889852542 -1.47503476833988 -1.44476546746331 -1.3952919833557 1.16110024200095 Max fold change below threshold 4 1.47503476833988 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778689_at YBR111W-A.S1 Protein involved in mRNA export coupled transcription activation; component of the SAGA histone acetylase complex 1.47443282928152 100.48950958252 157.053703308105 SUS1 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from physical interaction 124 // SAGA complex // inferred from direct assay /// 5643 // nuclear pore // inferred from direct assay --- 142.509704589844 102.585456848145 98.3935623168945 171.597702026367 0.000732421991415322 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR111W-A /GEN=SUS1 /DB_XREF=GI:41629677 /SEG=NC_001134:+462095,462535 /DEF=Protein involved in mRNA export coupled transcription activation; component of the SAGA histone acetylase complex /NOTE=Sus1p; go_component: SAGA complex [goid GO:0000124] [evidence IDA] [pmid 14718168]; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 14718168]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 14718168]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IMP,IPI] [pmid 14718168] --- --- --- --- --- --- S0028510 // SUS1 SGDID:S0028510, Chr II from 462133-462203,462284-462423,462494-462573, intron sequence removed, Verified ORF // sgd // 11 // --- /// AY278445 // Saccharomyces cerevisiae Sus1p (SUS1) mRNA, complete cds. // gb // 11 // --- /// YBR111W-A // cdna:known chromosome:SGD1:II:462133:462573:1 gene:YBR111W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.41769145974231 -1.38918038646354 1.47443282928152 -1.44836411279495 1.20411239725913 Max fold change below threshold 4 1.47443282928152 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775666_at YDL022W.S1 NAD-dependent glycerol-3-phosphate dehydrogenase, key enzyme of glycerol synthesis, essential for growth under osmotic stress; expression regulated by high-osmolarity glycerol response pathway; homolog of Gpd2p 1.47423943300569 7412.38427734375 6536.48486328125 GPD1 6973 // intracellular accumulation of glycerol // inferred from mutant phenotype 5777 // peroxisome // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 4367 // glycerol-3-phosphate dehydrogenase (NAD+) activity // inferred from mutant phenotype 7697.908203125 9383.2666015625 5441.501953125 5375.0615234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL022W /GEN=GPD1 /DB_XREF=GI:6320181 /SEG=NC_001136:+411822,412997 /DEF=glycerol-3-phosphate dehydrogenase /NOTE=Gpd1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 7934860]; go_function: glycerol-3-phosphate dehydrogenase (NAD+) activity [goid GO:0004367] [evidence IMP] [pmid 8196651]; go_process: intracellular accumulation of glycerol [goid GO:0006973] [evidence IMP] [pmid 8196651] --- --- --- --- --- --- S0002180 // GPD1 SGDID:S0002180, Chr IV from 411822-412997, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023508 // cdna:GeneFinder chromosome:SGD1:IV:411822:412997:1 // ensembl // 11 // --- /// GENSCAN00000025083 // cdna:Genscan chromosome:SGD1:IV:411822:412997:1 // ensembl // 11 // --- /// YDL022W // cdna:known chromosome:SGD1:IV:411822:412997:1 gene:YDL022W // ensembl // 11 // --- --- No cerevisiae_gene -1.32042699399534 1.21893719098304 -1.47423943300569 -1.41466607371227 -1.43215257528847 Max fold change below threshold 4 1.47423943300569 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774176_at YLR028C.S1 Enzyme of 'de novo' purine biosynthesis containing both 5-aminoimidazole-4-carboxamide ribonucleotide transformylase and inosine monophosphate cyclohydrolase activities, isozyme of Ade17p; ade16 ade17 mutants require adenine and histidine 1.47384554778667 4124.73413085938 4097.87683105469 ADE16 6164 // purine nucleotide biosynthesis // inferred from direct assay /// 6164 // purine nucleotide biosynthesis // inferred from mutant phenotype /// 6189 // 'de novo' IMP biosynthesis // inferred from mutant phenotype /// 6189 // 'de novo' IMP biosynthesis // inferred from direct assay /// 9060 // aerobic respiration // inferred from expression pattern /// 30437 // sporulation (sensu Fungi) // inferred from expression pattern 5829 // cytosol // inferred from direct assay 3937 // IMP cyclohydrolase activity // inferred from direct assay /// 4643 // phosphoribosylaminoimidazolecarboxamide formyltransferase activity // inferred from direct assay 4329.5400390625 4500.84130859375 3748.626953125 3866.21362304688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR028C /GEN=ADE16 /DB_XREF=GI:6323056 /SEG=NC_001144:-199541,201316 /DEF=Enzyme of 'de novo' purine biosynthesis containing both 5-aminoimidazole-4-carboxamide ribonucleotide transformylase and inosine monophosphate cyclohydrolase activities, isozyme of Ade17p; ade16 ade17 mutants require adenine and histidine /NOTE=Ade16p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 10877846]; go_function: IMP cyclohydrolase activity [goid GO:0003937] [evidence IDA] [pmid 10877846]; go_function: phosphoribosylaminoimidazolecarboxamide formyltransferase activity [goid GO:0004643] [evidence IDA] [pmid 10877846]; go_process: 'de novo' IMP biosynthesis [goid GO:0006189] [evidence IDA,IMP] [pmid 10877846]; go_process: aerobic respiration [goid GO:0009060] [evidence IEP] [pmid 10877846]; go_process: purine nucleotide biosynthesis [goid GO:0006164] [evidence IDA,IMP] [pmid 10877846]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IEP] [pmid 10877846] --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 1.70000004768372 --- S0004018 // ADE16 SGDID:S0004018, Chr XII from 201316-199541, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017842 // cdna:Genscan chromosome:SGD1:XII:199541:201196:-1 // ensembl // 11 // --- /// GENEFINDER00000024887 // cdna:GeneFinder chromosome:SGD1:XII:199541:201316:-1 // ensembl // 11 // --- /// YLR028C // cdna:known chromosome:SGD1:XII:199541:201316:-1 gene:YLR028C // ensembl // 11 // --- --- No cerevisiae_gene -1.47384554778667 1.03956569704535 -1.06355379788551 -1.15496689673354 -1.11983983845427 Max fold change below threshold 4 1.47384554778667 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769375_at YEL031W.S1 P-type ATPase, ion transporter of the ER membrane involved in ER function and Ca2+ homeostasis; required for regulating Hmg2p degradation; confers sensitivity to a killer toxin (SMKT) produced by Pichia farinosa KK1 1.47380262403782 1124.2731628418 1381.59136962891 SPF1 6486 // protein amino acid glycosylation // inferred from mutant phenotype /// 6874 // calcium ion homeostasis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // inferred from direct assay 15662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from direct assay 1387.93518066406 941.737487792969 1306.80883789063 1375.24755859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL031W /GEN=SPF1 /DB_XREF=GI:6320804 /SEG=NC_001137:+90258,93905 /DEF=Sensitivity to a killer toxin (SMK toxin) produced by Pichia Farinosa /NOTE=Spf1p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 12058017]; go_function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [goid GO:0015662] [evidence IDA] [pmid 12058017]; go_process: calcium ion homeostasis [goid GO:0006874] [evidence IMP] [pmid 12058017]; go_process: protein amino acid glycosylation [goid GO:0006486] [evidence IMP] [pmid 11791712] --- --- --- ec // A1A4_HUMAN // (Q13733) Sodium/potassium-transporting ATPase alpha-4 chain (EC 3.6.3.9) (Sodium pump 4) (Na+/K+ ATPase 4) // 1.0E-179 scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 0.639999985694885 S0000757 // span:22-44,59-81,197-214,218-237,400-419,992-1014,1021-1038,1053-1075,1136-1155,1175-1197 // numtm:10 S0000757 // SPF1 SGDID:S0000757, Chr V from 90258-93905, Verified ORF // sgd // 11 // --- /// GENSCAN00000016777 // cdna:Genscan chromosome:SGD1:V:90258:93905:1 // ensembl // 11 // --- /// GENEFINDER00000019630 // cdna:GeneFinder chromosome:SGD1:V:90258:93905:1 // ensembl // 11 // --- /// YEL031W // cdna:known chromosome:SGD1:V:90258:93905:1 gene:YEL031W // ensembl // 11 // --- --- No cerevisiae_gene -1.03013605720145 -1.47380262403782 -1.37119867312905 -1.06207973226167 -1.00922570048645 Max fold change below threshold 4 1.47380262403782 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769362_at YCR024C-B.S1 Identified by expression profiling and mass spectrometry 1.47377573415579 5724.73706054688 5539.61572265625 --- --- --- --- 6523.91943359375 7022.8037109375 4426.67041015625 4555.31201171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR024C-B /GEN=HSP30 /DB_XREF=GI:33438775 /SEG=NC_001135:-162594,162860 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Ycr024c-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028818 // span:5-27,36-58 // numtm:2 S0028818 // YCR024C-B SGDID:S0028818, Chr III from 162860-162594, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YCR024C-B // cdna:known chromosome:SGD1:III:162594:162860:-1 gene:YCR024C-B // ensembl // 11 // --- --- No cerevisiae_gene -1.41163187487104 1.07647002425794 -1.41431378827614 -1.47377573415579 -1.4321564399564 Max fold change below threshold 4 1.47377573415579 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773580_at YKL096W-A.S1 major constituent of the cell wall containing GPI-anchor, plays a role in stabilizing the cell wall, low pH resistance protein; cell wall mannoprotein 1.47367100027406 6887.89990234375 6311.25268554688 CWP2 6885 // regulation of pH // inferred from genetic interaction /// 7047 // cell wall organization and biogenesis // inferred from direct assay /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 9277 // cell wall (sensu Fungi) // inferred from direct assay 5199 // structural constituent of cell wall // inferred from direct assay 7519.76318359375 8384.0537109375 5391.74609375 5102.7421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL096W-A /GEN=CWP2 /DB_XREF=GI:6322753 /SEG=NC_001143:+258898,259176 /DEF=major constituent of the cell wall containing GPI-anchor, plays a role in stabilizing the cell wall, low pH resistance protein /NOTE=Cwp2p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 11956747]; go_function: structural constituent of cell wall [goid GO:0005199] [evidence IDA] [pmid 7768807]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IDA,IMP] [pmid 7768807]; go_process: regulation of pH [goid GO:0006885] [evidence IGI] [pmid 11126778] --- --- --- --- --- --- S0001956 // CWP2 SGDID:S0001956, Chr XI from 258898-259176, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022994 // cdna:GeneFinder chromosome:SGD1:XI:258300:259176:1 // ensembl // 11 // --- /// YKL096W-A // cdna:known chromosome:SGD1:XI:258898:259176:1 gene:YKL096W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.26957423173549 1.11493587048451 -1.34606134931146 -1.39468050847396 -1.47367100027406 Max fold change below threshold 4 1.47367100027406 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773450_at YLR094C.S1 Protein of unknown function 1.47323869751378 576.746978759766 440.079879760742 GIS3 7242 // intracellular signaling cascade // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 417.412475585938 540.170715332031 613.3232421875 462.747283935547 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR094C /GEN=GIS3 /DB_XREF=GI:6323123 /SEG=NC_001144:-327731,329239 /DEF=GIG3 suppressor /NOTE=Gis3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: intracellular signaling cascade [goid GO:0007242] [evidence IGI] [pmid 10628841] --- --- --- --- --- --- S0004084 // GIS3 SGDID:S0004084, Chr XII from 329239-327731, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017893 // cdna:Genscan chromosome:SGD1:XII:327731:329239:-1 // ensembl // 10 // --- /// GENEFINDER00000024580 // cdna:GeneFinder chromosome:SGD1:XII:327731:329239:-1 // ensembl // 10 // --- /// YLR094C // cdna:known chromosome:SGD1:XII:327731:329239:-1 gene:YLR094C // ensembl // 10 // --- --- No cerevisiae_gene -1.47323869751378 1.29409336549842 -1.10749683728999 1.46934573847261 1.10860913604935 Max fold change below threshold 4 1.47323869751378 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770326_at YDR459C.S1 likely functions in pathway(s) outside Ras 1.47304707915608 281.605529785156 379.167083740234 --- --- --- --- 344.099639892578 259.667266845703 303.543792724609 414.234527587891 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR459C /GEN=TOM1 /DB_XREF=GI:6320667 /SEG=NC_001136:-1382307,1383431 /DEF=likely functions in pathway(s) outside Ras /NOTE=Ydr459cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002867 // span:13-35,55-77,177-199,214-236 // numtm:4 S0002867 // YDR459C SGDID:S0002867, Chr IV from 1383433-1382309, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENEFINDER00000023943 // cdna:GeneFinder chromosome:SGD1:IV:1382309:1383019:-1 // ensembl // 10 // --- /// GENSCAN00000025459 // cdna:Genscan chromosome:SGD1:IV:1382309:1383433:-1 // ensembl // 10 // --- /// YDR459C // cdna:known chromosome:SGD1:IV:1382309:1383433:-1 gene:YDR459C // ensembl // 10 // --- --- No cerevisiae_gene -1.10633178796576 -1.32515601243281 1.47304707915608 -1.13360789493977 1.2038214504299 Max fold change below threshold 4 1.47304707915608 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776949_at YBR013C.S1 Hypothetical protein 1.47277050733167 59.0825710296631 53.6817512512207 --- --- --- --- 51.2582702636719 53.6591606140137 64.5059814453125 56.1052322387695 0.00805663969367743 0.00585938012227416 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR013C /GEN=IPP1 /DB_XREF=GI:6319487 /SEG=NC_001134:-265452,265841 /DEF=Hypothetical ORF /NOTE=Ybr013cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000217 // YBR013C SGDID:S0000217, Chr II from 265879-265490, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// YBR013C // cdna:known chromosome:SGD1:II:265490:265879:-1 gene:YBR013C // ensembl // 10 // --- --- No cerevisiae_gene -1.0614984351308 1.04683908251277 1.47277050733167 1.25845021912551 1.09455960862832 Max fold change below threshold 4 1.47277050733167 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1776523_at YLL018C.S1 Cytoplasmic aspartyl-tRNA synthetase, homodimeric enzyme that catalyzes the specific aspartylation of tRNA(Asp); class II aminoacyl tRNA synthetase; binding to its own mRNA may confer autoregulation 1.47267128989168 4275.64733886719 4322.08483886719 DPS1 6412 // protein biosynthesis // inferred from sequence similarity 5737 // cytoplasm // inferred from sequence similarity 3723 // RNA binding // inferred from direct assay /// 4815 // aspartate-tRNA ligase activity // inferred from sequence similarity /// 4815 // aspartate-tRNA ligase activity // inferred from direct assay 4712.68798828125 4501.75439453125 4049.54028320313 3931.48168945313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL018C /GEN=DPS1 /DB_XREF=GI:6323011 /SEG=NC_001144:-109901,111574 /DEF=Cytoplasmic aspartyl-tRNA synthetase, homodimeric enzyme that catalyzes the specific aspartylation of tRNA(Asp), member of class II aminoacyl tRNA synthetases /NOTE=Dps1p; go_component: cytoplasm [goid GO:0005737] [evidence ISS] [pmid 3902099]; go_function: aspartate-tRNA ligase activity [goid GO:0004815] [evidence ISS] [pmid 3902099]; go_process: protein biosynthesis [goid GO:0006412] [evidence ISS] [pmid 3902099] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 5.19999980926514 --- S0003941 // DPS1 SGDID:S0003941, Chr XII from 111574-109901, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017714 // cdna:Genscan chromosome:SGD1:XII:109901:111574:-1 // ensembl // 11 // --- /// GENEFINDER00000024709 // cdna:GeneFinder chromosome:SGD1:XII:109901:111574:-1 // ensembl // 11 // --- /// YLL018C // cdna:known chromosome:SGD1:XII:109901:111574:-1 gene:YLL018C // ensembl // 11 // --- --- No cerevisiae_gene -1.09047723423559 -1.0468558644617 -1.47267128989168 -1.16375876240292 -1.19870531278928 Max fold change below threshold 4 1.47267128989168 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779543_at SPAC13D6.03c.S1 --- 1.47265674481793 --- --- --- --- 0.231739968061447 0.303006500005722 0.32783117890358 0.224829122424126 0.943848013877869 0.998778998851776 0.828612983226776 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC13D6.03c /DEF=tRNA methyltransferase --- --- --- --- --- --- SPAC13D6.03c // |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.08763106355588 1.30752801314523 1.47265674481793 1.41465100580601 -1.03073821381682 Max fold change below threshold 0 1.47265674481793 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769459_at YHR131C.S1 Hypothetical protein 1.47234504531479 257.980964660645 290.821548461914 --- --- 5737 // cytoplasm // inferred from direct assay --- 266.426452636719 217.275588989258 298.686340332031 315.216644287109 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR131C /GEN=ARP1 /DB_XREF=GI:6321923 /SEG=NC_001140:-365342,367864 /DEF=Hypothetical ORF /NOTE=Yhr131cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001173 // YHR131C SGDID:S0001173, Chr VIII from 367894-365342, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020305 // cdna:GeneFinder chromosome:SGD1:VIII:365342:367894:-1 // ensembl // 11 // --- /// YHR131C // cdna:known chromosome:SGD1:VIII:365342:367894:-1 gene:YHR131C // ensembl // 11 // --- --- No cerevisiae_gene -1.11557260028911 -1.22621438458 1.47234504531479 1.12108365132684 1.18312818103283 Max fold change below threshold 4 1.47234504531479 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769936_at YDR069C.S1 Ubiquitin hydrolase, required for recycling ubiquitin from proteasome-bound ubiquitinated intermediates, acts at the late endosome/prevacuolar compartment to recover ubiquitin from ubiquitinated membrane proteins en route to the vacuole 1.47213805696927 1066.45727539063 1650.18389892578 DOA4 6275 // regulation of DNA replication // inferred from mutant phenotype /// 6897 // endocytosis // inferred from mutant phenotype /// 16579 // protein deubiquitination // traceable author statement 502 // proteasome complex (sensu Eukaryota) // inferred from physical interaction /// 5624 // membrane fraction // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4175 // endopeptidase activity // inferred from genetic interaction /// 4175 // endopeptidase activity // inferred from physical interaction /// 4843 // ubiquitin-specific protease activity // traceable author statement /// 16787 // hydrolase activity // traceable author statement 1524.78442382813 1097.15270996094 1035.76184082031 1775.58337402344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR069C /GEN=DOA4 /DB_XREF=GI:6320274 /SEG=NC_001136:-584935,587715 /DEF=Ubiquitin hydrolase, required for recycling ubiquitin from proteasome-bound ubiquitinated intermediates, acts at the late endosome/prevacuolar compartment to recover ubiquitin from ubiquitinated membrane proteins en route to the vacuole /NOTE=Doa4p; go_component: proteasome complex (sensu Eukarya) [goid GO:0000502] [evidence IPI] [pmid 10069815]; go_function: endopeptidase activity [goid GO:0004175] [evidence IGI,IPI] [pmid 10069815]; go_function: hydrolase activity [goid GO:0016787] [evidence TAS] [pmid 8657109]; go_function: ubiquitin-specific protease activity [goid GO:0004843] [evidence TAS] [pmid 8657109]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 9119204]; go_process: protein deubiquitination [goid GO:0016579] [evidence TAS] [pmid 8247125]; go_process: regulation of DNA replication [goid GO:0006275] [evidence IMP] [pmid 8657109] --- --- --- --- --- --- S0002476 // DOA4 SGDID:S0002476, Chr IV from 587716-584936, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023774 // cdna:GeneFinder chromosome:SGD1:IV:584936:586639:-1 // ensembl // 10 // --- /// GENSCAN00000025149 // cdna:Genscan chromosome:SGD1:IV:584936:587716:-1 // ensembl // 10 // --- /// YDR069C // cdna:known chromosome:SGD1:IV:584936:587716:-1 gene:YDR069C // ensembl // 10 // --- --- No cerevisiae_gene -1.0380128046438 -1.38976498894344 1.12208164672356 -1.47213805696927 1.16448157934723 Max fold change below threshold 4 1.47213805696927 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774643_at YAL020C.S1 Protein with a potential role in regulatory interactions between microtubules and the cell cycle, as suggested by genetic and physical interactions with Nap1p and genetic interactions with TUB1 1.47206490258059 540.88427734375 510.775894165039 ATS1 226 // microtubule cytoskeleton organization and biogenesis // inferred from genetic interaction /// 226 // microtubule cytoskeleton organization and biogenesis // inferred from mutant phenotype /// 7017 // microtubule-based process // inferred from sequence similarity /// 7017 // microtubule-based process // inferred from genetic interaction /// 7117 // budding cell bud growth // inferred from genetic interaction /// 7117 // budding cell bud growth // inferred from mutant phenotype 5737 // cytoplasm // inferred from physical interaction --- 488.480010986328 425.537963867188 656.230590820313 533.07177734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL020C /GEN=ATS1 /DB_XREF=GI:6319299 /SEG=NC_001133:-113617,114618 /DEF=Protein with a potential role in regulatory interactions between microtubules and the cell cycle, as suggested by genetic and physical interactions with Nap1p and genetic interactions with TUB1 /NOTE=Ats1p; go_component: cytoplasm [goid GO:0005737] [evidence IPI] [pmid 13680156]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: bud growth [goid GO:0007117] [evidence IGI,IMP] [pmid 13680156]; go_process: microtubule cytoskeleton organization and biogenesis [goid GO:0000226] [evidence IGI,IMP] [pmid 13680156]; go_process: microtubule-based process [goid GO:0007017] [evidence IGI,ISS] [pmid 8070652] --- --- --- --- --- --- S0000018 // ATS1 SGDID:S0000018, Chr I from 114616-113615, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018224 // cdna:GeneFinder chromosome:SGD1:I:113615:114550:-1 // ensembl // 11 // --- /// GENSCAN00000020362 // cdna:Genscan chromosome:SGD1:I:113615:114469:-1 // ensembl // 11 // --- /// YAL020C // cdna:known chromosome:SGD1:I:113615:114616:-1 gene:YAL020C // ensembl // 11 // --- --- No cerevisiae_gene -1.03280286073223 -1.14791170815205 1.47206490258059 1.34341339678417 1.0912867780759 Max fold change below threshold 4 1.47206490258059 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773147_at YLR069C.S1 Mitochondrial elongation factor involved in translational elongation 1.47174474449353 984.346038818359 1024.84103393555 MEF1 6414 // translational elongation // inferred from mutant phenotype /// 6414 // translational elongation // inferred from sequence similarity 5739 // mitochondrion // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from direct assay 3746 // translation elongation factor activity // inferred from sequence similarity /// 3746 // translation elongation factor activity // inferred from mutant phenotype 959.440002441406 853.346740722656 1115.34533691406 1090.24206542969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR069C /GEN=MEF1 /DB_XREF=GI:6323098 /SEG=NC_001144:-271631,273916 /DEF=mitochondrial elongation factor G-like protein /NOTE=Mef1p; go_component: mitochondrion [goid GO:0005739] [evidence IMP] [pmid 1935960]; go_function: translation elongation factor activity [goid GO:0003746] [evidence IMP,ISS] [pmid 1935960]; go_process: translational elongation [goid GO:0006414] [evidence IMP,ISS] [pmid 1935960] --- --- --- --- --- --- S0004059 // MEF1 SGDID:S0004059, Chr XII from 273916-271631, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017870 // cdna:Genscan chromosome:SGD1:XII:271631:273916:-1 // ensembl // 11 // --- /// GENEFINDER00000024744 // cdna:GeneFinder chromosome:SGD1:XII:271631:273880:-1 // ensembl // 11 // --- /// YLR069C // cdna:known chromosome:SGD1:XII:271631:273916:-1 gene:YLR069C // ensembl // 11 // --- --- No cerevisiae_gene -1.40767328044887 -1.12432608769198 1.47174474449353 1.16249617910024 1.13633167541007 Max fold change below threshold 4 1.47174474449353 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769322_s_at YLR154C-H.S1 Identified by fungal homology and RT-PCR /// Identified by fungal homology and RT-PCR /// Identified by fungal homology and RT-PCR /// Identified by fungal homology and RT-PCR 1.47165246317335 899.043823242188 954.756072998047 --- --- --- --- 1021.87005615234 1103.71850585938 694.369140625 887.64208984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR154C-H /GEN=TAR1 /DB_XREF=GI:33438834 /SEG=NC_001144:-468828,468959 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ylr154c-hp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028562 // YLR154C-H SGDID:S0028562, Chr XII from 468959-468828, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0028564 // YLR156C-A SGDID:S0028564, Chr XII from 472611-472480, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0028565 // YLR157C-C SGDID:S0028565, Chr XII from 482191-482060, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0028566 // YLR159C-A SGDID:S0028566, Chr XII from 485843-485712, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YLR154C-H // cdna:known chromosome:SGD1:XII:468828:468959:-1 gene:YLR154C-H // ensembl // 11 // --- /// YLR156C-A // cdna:known chromosome:SGD1:XII:472480:472611:-1 gene:YLR156C-A // ensembl // 11 // --- /// YLR157C-C // cdna:known chromosome:SGD1:XII:482060:482191:-1 gene:YLR157C-C // ensembl // 11 // --- /// YLR159C-A // cdna:known chromosome:SGD1:XII:485712:485843:-1 gene:YLR159C-A // ensembl // 11 // --- K01047 // gb // 6 // Negative Strand Matching Probes No cerevisiae_gene -1.28727102205311 1.08009672973021 1.03209107412181 -1.47165246317335 -1.15121856866006 Max fold change below threshold 4 1.47165246317335 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773170_at YGL040C.S1 Delta-aminolevulinate dehydratase, a homo-octameric enzyme, catalyzes the conversion of delta-aminolevulinic acid to porphobilinogen, the second step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus 1.47131582549839 2543.10070800781 1811.50152587891 HEM2 6783 // heme biosynthesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4655 // porphobilinogen synthase activity // inferred from mutant phenotype 1791.45520019531 2450.40502929688 2635.79638671875 1831.5478515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL040C /GEN=HEM2 /DB_XREF=GI:6321398 /SEG=NC_001139:-419531,420559 /DEF=Delta-aminolevulinate dehydratase, a homo-octameric enzyme, catalyzes the conversion of delta-aminolevulinic acid to porphobilinogen, the second step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus /NOTE=Hem2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: porphobilinogen synthase activity [goid GO:0004655] [evidence IMP] [pmid 323256]; go_process: heme biosynthesis [goid GO:0006783] [evidence IMP] [pmid 323256] --- --- --- --- --- --- S0003008 // HEM2 SGDID:S0003008, Chr VII from 420561-419533, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019313 // cdna:Genscan chromosome:SGD1:VII:419506:420561:-1 // ensembl // 11 // --- /// YGL040C // cdna:known chromosome:SGD1:VII:419533:420561:-1 gene:YGL040C // ensembl // 11 // --- --- No cerevisiae_gene 1.3455234984925 1.36782936521646 1.03341416818296 1.47131582549839 1.02237993524081 Max fold change below threshold 4 1.47131582549839 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sc-TDH1-3_at AFFX-r2-Sc-TDH1-3 Glyceraldehyde-3-phosphate dehydrogenase, isozyme 1, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall 1.47015424000663 10153.4294433594 7748.91821289063 TDH1 6094 // gluconeogenesis // inferred from expression pattern /// 6096 // glycolysis // inferred from expression pattern 5737 // cytoplasm // inferred from direct assay /// 5811 // lipid particle // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay 4365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // inferred from direct assay 9054.4130859375 13311.3837890625 6995.47509765625 6443.42333984375 0.0107421996071935 0.0107421996071935 0.018554700538516 0.0107421996071935 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=TDH1 SGD:YJL052W Glyceraldehyde-3-phosphate dehydrogenase 1 (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- S0003588 // TDH1 SGDID:S0003588, Chr X from 338187-339185, Verified ORF // sgd // 11 // --- /// GENSCAN00000024101 // cdna:Genscan chromosome:SGD1:X:338187:339185:1 // ensembl // 11 // --- /// GENEFINDER00000024436 // cdna:GeneFinder chromosome:SGD1:X:338187:339185:1 // ensembl // 11 // --- /// YJL052W // cdna:known chromosome:SGD1:X:338187:339185:1 gene:YJL052W // ensembl // 11 // --- --- AFFX_control cerevisiae_gene -1.44228970741414 1.47015424000663 -1.23482939739511 -1.29432425382674 -1.40521778694073 Max fold change below threshold 4 1.47015424000663 Max fold change below threshold PPPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1776464_at YER017C.S1 Component, with Yta12p, of the mitochondrial inner membrane m-AAA protease that mediates degradation of misfolded or unassembled proteins and is also required for correct assembly of mitochondrial enzyme complexes 1.46950802860906 1585.36303710938 1699.92077636719 AFG3 6461 // protein complex assembly // inferred from mutant phenotype /// 6465 // signal peptide processing // inferred from mutant phenotype /// 6508 // proteolysis and peptidolysis // inferred from mutant phenotype /// 45041 // mitochondrial intermembrane space protein import // traceable author statement 5743 // mitochondrial inner membrane // inferred from direct assay /// 5745 // m-AAA complex // inferred from direct assay 8237 // metallopeptidase activity // inferred from mutant phenotype /// 16887 // ATPase activity // inferred from sequence similarity 1716.36779785156 1514.49816894531 1656.22790527344 1683.47375488281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER017C /GEN=AFG3 /DB_XREF=GI:6320854 /SEG=NC_001137:-189502,191787 /DEF=Component, with Yta12p, of the mitochondrial inner membrane m-AAA protease that mediates degradation of misfolded or unassembled proteins and is also required for correct assembly of mitochondrial enzyme complexes /NOTE=Afg3p; go_component: m-AAA complex [goid GO:0005745] [evidence IDA] [pmid 8681382]; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 7926051]; go_function: ATPase activity [goid GO:0016887] [evidence ISS] [pmid 7900428]; go_function: metallopeptidase activity [goid GO:0008237] [evidence IMP] [pmid 8681382]; go_process: mitochondrial intermembrane space protein import [goid GO:0045041] [evidence TAS] [pmid 12417197]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP] [pmid 8681382]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence IMP] [pmid 8681382] --- --- --- --- --- S0000819 // span:223-245 // numtm:1 S0000819 // AFG3 SGDID:S0000819, Chr V from 191787-189502, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016819 // cdna:Genscan chromosome:SGD1:V:189502:191784:-1 // ensembl // 11 // --- /// GENEFINDER00000019599 // cdna:GeneFinder chromosome:SGD1:V:189502:191679:-1 // ensembl // 11 // --- /// YER017C // cdna:known chromosome:SGD1:V:189502:191787:-1 gene:YER017C // ensembl // 11 // --- --- No cerevisiae_gene 1.29324002692653 -1.13329143147583 -1.46950802860906 -1.03631136293903 -1.01953938567402 Max fold change below threshold 4 1.46950802860906 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778198_at YDR050C.S1 Triose phosphate isomerase, abundant glycolytic enzyme; mRNA half-life is regulated by iron availability; transcription is controlled by activators Reb1p, Gcr1p, and Rap1p through binding sites in the 5' non-coding region 1.4691422443997 8044.94458007813 7391.44482421875 TPI1 6096 // glycolysis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5829 // cytosol // traceable author statement 4807 // triose-phosphate isomerase activity // inferred from mutant phenotype /// 4807 // triose-phosphate isomerase activity // inferred from sequence similarity 8795.8349609375 9918.693359375 6171.19580078125 5987.0546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR050C /GEN=TPI1 /DB_XREF=GI:6320255 /SEG=NC_001136:-555722,556468 /DEF=induced under stress conditions /NOTE=Tpi1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: triose-phosphate isomerase activity [goid GO:0004807] [evidence IMP,ISS] [pmid 6759603]; go_process: gluconeogenesis [goid GO:0006094] [evidence TAS]; go_process: glycolysis [goid GO:0006096] [evidence TAS] --- --- --- --- --- --- S0002457 // TPI1 SGDID:S0002457, Chr IV from 556469-555723, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023478 // cdna:GeneFinder chromosome:SGD1:IV:555723:556469:-1 // ensembl // 11 // --- /// GENSCAN00000025135 // cdna:Genscan chromosome:SGD1:IV:555723:556469:-1 // ensembl // 11 // --- /// YDR050C // cdna:known chromosome:SGD1:IV:555723:556469:-1 gene:YDR050C // ensembl // 11 // --- --- No cerevisiae_gene -1.36422493833907 1.12765796577859 -1.28151641464775 -1.42530479422221 -1.4691422443997 Max fold change below threshold 4 1.4691422443997 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777080_at YJL101C.S1 Gamma glutamylcysteine synthetase, catalyzes the first step in the gamma-glutamyl cycle for glutathione (GSH) biosynthesis; expression induced by oxidants, cadmium, and mercury 1.46857057662738 1703.61108398438 1753.5859375 GSH1 6750 // glutathione biosynthesis // traceable author statement /// 46686 // response to cadmium ion // inferred from direct assay 5622 // intracellular // traceable author statement 4357 // glutamate-cysteine ligase activity // inferred from direct assay 1707.43469238281 1675.84790039063 1731.37426757813 1799.73718261719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL101C /GEN=GSH1 /DB_XREF=GI:6322360 /SEG=NC_001142:-234237,236273 /DEF=Gamma glutamylcysteine synthetase, catalyzes the first step in the gamma-glutamyl cycle for glutathione (GSH) biosynthesis; expression induced by oxidants, cadmium, and mercury /NOTE=Gsh1p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 12406228]; go_function: glutamate-cysteine ligase activity [goid GO:0004357] [evidence IDA] [pmid 1687097]; go_process: glutathione biosynthesis [goid GO:0006750] [evidence TAS] [pmid 12011041]; go_process: response to cadmium ion [goid GO:0046686] [evidence IDA] [pmid 10921921] --- --- --- --- --- --- S0003637 // GSH1 SGDID:S0003637, Chr X from 236273-234237, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024061 // cdna:Genscan chromosome:SGD1:X:234237:236273:-1 // ensembl // 11 // --- /// GENEFINDER00000024454 // cdna:GeneFinder chromosome:SGD1:X:234237:236273:-1 // ensembl // 11 // --- /// YJL101C // cdna:known chromosome:SGD1:X:234237:236273:-1 gene:YJL101C // ensembl // 11 // --- --- No cerevisiae_gene -1.46857057662738 -1.01884824510913 1.27044173269976 1.01402078527636 1.05405916293382 Max fold change below threshold 4 1.46857057662738 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775282_at YGR156W.S1 Pta1p Interacting protein 1.46854102276833 211.391059875488 266.013442993164 PTI1 6378 // mRNA polyadenylylation // inferred from mutant phenotype /// 6378 // mRNA polyadenylylation // inferred from physical interaction /// 6379 // mRNA cleavage // inferred from physical interaction /// 6379 // mRNA cleavage // inferred from mutant phenotype /// 30846 // transcription termination from Pol II promoter, RNA polymerase(A) coupled // inferred from physical interaction /// 30847 // transcription termination from Pol II promoter, RNA polymerase(A)-independent // inferred from mutant phenotype /// 30847 // transcription termination from Pol II promoter, RNA polymerase(A)-independent // inferred from physical interaction /// 31126 // snoRNA 3'-end processing // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from physical interaction 3723 // RNA binding // inferred from curator 234.802856445313 180.703079223633 242.079040527344 297.224029541016 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR156W /GEN=PTI1 /DB_XREF=GI:6321595 /SEG=NC_001139:+800549,801826 /DEF=Pta1p Interacting protein /NOTE=Pti1p; go_component: mRNA cleavage and polyadenylation specificity factor complex [goid GO:0005847] [evidence IPI] [pmid 12819204]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: pre-mRNA cleavage factor activity [goid GO:0030363] [evidence IMP,IPI,ISS] [pmid 12504017]; go_process: mRNA cleavage [goid GO:0006379] [evidence IMP,IPI] [pmid 12504017]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IMP,IPI] [pmid 12504017]; go_process: transcription termination from Pol II promoter, poly(A) coupled [goid GO:0030846] [evidence IPI] [pmid 12819204]; go_process: transcription termination from Pol II promoter, poly(A)-independent [goid GO:0030847] [evidence IMP] [pmid 12773397]; go_process: transcription termination from Pol II promoter, poly(A)-independent [goid GO:0030847] [evidence IPI] [pmid 12819204] --- --- --- --- --- --- S0003388 // PTI1 SGDID:S0003388, Chr VII from 800551-801828, Verified ORF // sgd // 11 // --- /// GENSCAN00000019460 // cdna:Genscan chromosome:SGD1:VII:800551:801828:1 // ensembl // 11 // --- /// GENEFINDER00000021447 // cdna:GeneFinder chromosome:SGD1:VII:800950:801828:1 // ensembl // 11 // --- /// YGR156W // cdna:known chromosome:SGD1:VII:800551:801828:1 gene:YGR156W // ensembl // 11 // --- --- No cerevisiae_gene 1.46854102276833 -1.29938492168541 -1.16894136636341 1.03098848196391 1.26584503289568 Max fold change below threshold 4 1.46854102276833 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776338_at YAL014C.S1 Endosomal SNARE related to mammalian syntaxin 8 1.46806306459776 722.510498046875 911.775634765625 SYN8 6810 // transport // inferred from mutant phenotype /// 6810 // transport // inferred from physical interaction 5768 // endosome // traceable author statement 5484 // SNAP receptor activity // inferred from direct assay 873.145202636719 594.760009765625 850.260986328125 950.406066894531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL014C /GEN=SYN8 /DB_XREF=GI:27469359 /SEG=NC_001133:-128255,129022 /DEF=Endosomal SNARE related to mammalian syntaxin 8 /NOTE=Syn8p; go_component: endosome [goid GO:0005768] [evidence TAS] [pmid 12453154]; go_function: SNAP receptor activity [goid GO:0005484] [evidence IDA] [pmid 12453154]; go_process: transport [goid GO:0006810] [evidence IMP,IPI] [pmid 12453154] --- --- --- --- --- S0000012 // span:235-254 // numtm:1 S0000012 // SYN8 SGDID:S0000012, Chr I from 129020-128253, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018218 // cdna:GeneFinder chromosome:SGD1:I:128253:129020:-1 // ensembl // 11 // --- /// GENSCAN00000020368 // cdna:Genscan chromosome:SGD1:I:128253:129020:-1 // ensembl // 11 // --- /// YAL014C // cdna:known chromosome:SGD1:I:128253:129020:-1 gene:YAL014C // ensembl // 11 // --- --- No cerevisiae_gene -1.44598221108478 -1.46806306459776 1.1342103458566 -1.02691434356811 1.08848569977193 Max fold change below threshold 4 1.46806306459776 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775463_at YKR002W.S1 Poly(A) polymerase, one of three factors required for mRNA 3'-end polyadenylation, forms multiprotein complex with polyadenylation factor I (PF I), also required for mRNA nuclear export; may also polyadenylate rRNAs 1.46803374915652 1561.15008544922 1742.81976318359 PAP1 6378 // mRNA polyadenylylation // inferred from mutant phenotype /// 6378 // mRNA polyadenylylation // inferred from direct assay /// 6406 // mRNA-nucleus export // inferred from mutant phenotype 5654 // nucleoplasm // inferred from physical interaction /// 5847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from physical interaction 4652 // polynucleotide adenylyltransferase activity // inferred from direct assay 1714.53295898438 1534.78466796875 1587.51550292969 1771.10656738281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR002W /GEN=PAP1 /DB_XREF=GI:6322854 /SEG=NC_001143:+442875,444581 /DEF=poly(A) polymerase /NOTE=Pap1p; go_component: mRNA cleavage and polyadenylation specificity factor complex [goid GO:0005847] [evidence IPI] [pmid 12819204]; go_component: nucleoplasm [goid GO:0005654] [evidence IPI] [pmid 8631901]; go_function: polynucleotide adenylyltransferase activity [goid GO:0004652] [evidence IDA] [pmid 1840648]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IDA] [pmid 1840648]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IMP] [pmid 8524265] --- --- --- --- --- --- S0001710 // PAP1 SGDID:S0001710, Chr XI from 442875-444581, Verified ORF // sgd // 11 // --- /// GENSCAN00000018419 // cdna:Genscan chromosome:SGD1:XI:442875:444581:1 // ensembl // 11 // --- /// GENEFINDER00000023054 // cdna:GeneFinder chromosome:SGD1:XI:442875:444581:1 // ensembl // 11 // --- /// YKR002W // cdna:known chromosome:SGD1:XI:442875:444581:1 gene:YKR002W // ensembl // 11 // --- --- No cerevisiae_gene -1.46803374915652 -1.11711629309766 -1.10909615809507 -1.08001021459021 1.03299651260828 Max fold change below threshold 4 1.46803374915652 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770139_at YML072C.S1 Contains three calcium and lipid binding domains; localized to the bud; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery; mRNA is targeted to the bud via the mRNA transport system involving She2p; C-terminal portion of Tcb1p, Tcb2p and Tcb3p interact 1.46801235330288 2947.88891601563 3110.70373535156 TCB3 --- 5739 // mitochondrion // inferred from direct assay /// 5933 // bud // inferred from direct assay 8289 // lipid binding // inferred from direct assay 3254.16943359375 2958.82299804688 2936.95483398438 2967.23803710938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML072C /GEN=TCB3 /DB_XREF=GI:6323568 /SEG=NC_001145:-124730,129367 /DEF=Contains three calcium and lipid binding domains; localized to the bud; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery; mRNA is targeted to the bud via the mRNA transport system involving She2p; C-terminal portion of Tcb1p, Tcb2p and Tcb3p interact /NOTE=Tcb3p; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 13679573]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.3.1.Quinohemoprotein amine dehydrogenase A chain, domains 1 an // All alpha proteins; Cytochrome c; Cytochrome c; Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 // 3.79999995231628 S0004537 // span:207-229 // numtm:1 S0004537 // TCB3 SGDID:S0004537, Chr XIII from 129367-124730, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018656 // cdna:Genscan chromosome:SGD1:XIII:124730:129367:-1 // ensembl // 11 // --- /// GENEFINDER00000022068 // cdna:GeneFinder chromosome:SGD1:XIII:124730:129367:-1 // ensembl // 11 // --- /// YML072C // cdna:known chromosome:SGD1:XIII:124730:129367:-1 gene:YML072C // ensembl // 11 // --- --- No cerevisiae_gene -1.46801235330288 -1.09981889276305 -1.05617278628937 -1.10800799383729 -1.09669982417855 Max fold change below threshold 4 1.46801235330288 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771955_at YBR111C.S1 Nudix hydrolase family member with ADP-ribose pyrophosphatase activity 1.4678417676342 3076.63537597656 2719.11669921875 YSA1 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4636 // phosphoribosyl-ATP diphosphatase activity // inferred from direct assay 2878.24096679688 3307.658203125 2845.61254882813 2559.99243164063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR111C /GEN=YSA1 /DB_XREF=GI:6319587 /SEG=NC_001134:-461134,461829 /DEF=Protein with weak homology to D. melanogaster serendipity protein and X. laevis basis fibroblast growth factor /NOTE=Ysa1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: phosphoribosyl-ATP diphosphatase activity [goid GO:0004636] [evidence IDA] [pmid 10542272]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000315 // YSA1 SGDID:S0000315, Chr II from 461867-461172, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021229 // cdna:Genscan chromosome:SGD1:II:461172:461810:-1 // ensembl // 11 // --- /// GENEFINDER00000022146 // cdna:GeneFinder chromosome:SGD1:II:461172:461810:-1 // ensembl // 11 // --- /// YBR111C // cdna:known chromosome:SGD1:II:461172:461867:-1 gene:YBR111C // ensembl // 11 // --- --- No cerevisiae_gene -1.4678417676342 1.1491943312884 1.14373072135479 -1.01146621945499 -1.12431620157263 Max fold change below threshold 4 1.4678417676342 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773285_at YNL090W.S1 Non-essential small GTPase of the Rho/Rac subfamily of Ras-like proteins, involved in the establishment of cell polarity and in microtubule assembly 1.4677651289935 304.539367675781 408.731216430664 RHO2 7015 // actin filament organization // traceable author statement /// 7017 // microtubule-based process // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from sequence similarity /// 7264 // small GTPase mediated signal transduction // inferred from sequence similarity /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from sequence similarity 5622 // intracellular // traceable author statement 3924 // GTPase activity // inferred from sequence similarity /// 4871 // signal transducer activity // inferred from sequence similarity 401.390045166016 273.47021484375 335.608520507813 416.072387695313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL090W /GEN=RHO2 /DB_XREF=GI:6324239 /SEG=NC_001146:+456565,457143 /DEF=Gtp-binding protein of the rho subfamily of ras-like proteins /NOTE=Rho2p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 9891811]; go_function: GTPase activity [goid GO:0003924] [evidence ISS] [pmid 9891811]; go_function: signal transducer activity [goid GO:0004871] [evidence ISS] [pmid 9891811]; go_process: actin filament organization [goid GO:0007015] [evidence TAS] [pmid 9891811]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence ISS] [pmid 9891811]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence ISS] [pmid 9891811]; go_process: microtubule-based process [goid GO:0007017] [evidence IMP] [pmid 9891811]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence ISS] [pmid 9891811] --- --- --- --- --- --- S0005034 // RHO2 SGDID:S0005034, Chr XIV from 456565-457143, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020508 // cdna:GeneFinder chromosome:SGD1:XIV:456565:457164:1 // ensembl // 11 // --- /// YNL090W // cdna:known chromosome:SGD1:XIV:456565:457143:1 gene:YNL090W // ensembl // 11 // --- YNL089C // ensembl // 8 // Negative Strand Matching Probes No cerevisiae_gene 1.00481747199768 -1.4677651289935 -1.06648107557962 -1.19600671806147 1.03657874106774 Max fold change below threshold 4 1.4677651289935 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778120_at YLR017W.S1 Methylthioadenosine phosphorylase (MTAP), catalyzes the initial step in the methionine salvage pathway; affects polyamine biosynthesis through regulation of ornithine decarboxylase (Spe1p) activity; regulates ADH2 gene expression 1.46736539981324 797.136016845703 1013.2578125 MEU1 6537 // glutamate biosynthesis // inferred from mutant phenotype /// 19509 // methionine salvage // inferred from direct assay /// 19509 // methionine salvage // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 17061 // S-methyl-5-thioadenosine phosphorylase activity // inferred from direct assay /// 17061 // S-methyl-5-thioadenosine phosphorylase activity // inferred from mutant phenotype 986.169677734375 672.068237304688 922.203796386719 1040.34594726563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR017W /GEN=MEU1 /DB_XREF=GI:6323045 /SEG=NC_001144:+177607,178620 /DEF=Protein that regulates ADH2 gene expression /NOTE=Meu1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 8807288]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: glutamate biosynthesis [goid GO:0006537] [evidence IMP] [pmid 8807288] --- --- --- --- --- --- S0004007 // MEU1 SGDID:S0004007, Chr XII from 177607-178620, Verified ORF // sgd // 11 // --- /// GENSCAN00000017781 // cdna:Genscan chromosome:SGD1:XII:177922:178620:1 // ensembl // 11 // --- /// GENEFINDER00000024691 // cdna:GeneFinder chromosome:SGD1:XII:177922:178620:1 // ensembl // 11 // --- /// YLR017W // cdna:known chromosome:SGD1:XII:177607:178620:1 gene:YLR017W // ensembl // 11 // --- --- No cerevisiae_gene 1.18757889571864 -1.46736539981324 -1.12318665884759 -1.06936198007239 1.05493605284611 Max fold change below threshold 4 1.46736539981324 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777129_at YKL095W.S1 Essential nuclear protein; putative spliceosomal component involved in mRNA splicing, based on computational analysis of large-scale protein-protein interaction data 1.46719999211106 105.607906341553 129.525444030762 YJU2 398 // nuclear mRNA splicing, via spliceosome // RCA 5634 // nucleus // inferred from direct assay --- 123.788757324219 97.6762237548828 113.539588928223 135.262130737305 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL095W /GEN=YJU2 /DB_XREF=GI:6322755 /SEG=NC_001143:+261922,262758 /DEF=Essential nuclear protein; putative spliceosomal component involved in mRNA splicing, based on computational analysis of large-scale protein-protein interaction data /NOTE=Yju2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0001578 // YJU2 SGDID:S0001578, Chr XI from 261922-262758, Verified ORF // sgd // 11 // --- /// GENSCAN00000018345 // cdna:Genscan chromosome:SGD1:XI:261922:262758:1 // ensembl // 11 // --- /// GENEFINDER00000023083 // cdna:GeneFinder chromosome:SGD1:XI:261922:262758:1 // ensembl // 11 // --- /// YKL095W // cdna:known chromosome:SGD1:XI:261922:262758:1 gene:YKL095W // ensembl // 11 // --- --- No cerevisiae_gene 1.46719999211106 -1.26733766484324 1.28011899978059 -1.09026955701306 1.09268510049774 Max fold change below threshold 4 1.46719999211106 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sp-SRB4-5_at AFFX-r2-Sp-SRB4-5 --- 1.46693658455591 --- --- --- --- 1.13641214370728 0.823860824108124 0.943960964679718 0.899696230888367 0.870360970497131 0.994140982627869 0.943848013877869 0.904784977436066 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=SRB4 RNA polymerase II holoenzyme component (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPBC31F10.04c // |srb4||RNA polymerase II holoenzyme component |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- AFFX_control No -1.16061837288588 -1.37937393119464 -1.46693658455591 -1.20387620487342 -1.26310648493567 Max fold change below threshold 0 1.46693658455591 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772830_at YGR199W.S1 Protein O-mannosyltransferase, transfers mannose from dolichyl phosphate-D-mannose to protein serine/threonine residues of secretory proteins; reaction is essential for cell wall rigidity; member of a family of mannosyltransferases 1.46671792225718 291.542572021484 417.283355712891 PMT6 6493 // O-linked glycosylation // traceable author statement 5783 // endoplasmic reticulum // traceable author statement 4169 // dolichyl-phosphate-mannose-protein mannosyltransferase activity // traceable author statement 382.905853271484 322.022094726563 261.063049316406 451.660858154297 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR199W /GEN=PMT6 /DB_XREF=GI:6321638 /SEG=NC_001139:+897505,899784 /DEF=Transfers mannose residues from dolichyl phosphate-D-mannose to specific serine/threonine residues of proteins in the secretory pathway /NOTE=Pmt6p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS] [pmid 8918452]; go_function: dolichyl-phosphate-mannose-protein mannosyltransferase activity [goid GO:0004169] [evidence TAS] [pmid 8918452]; go_process: O-linked glycosylation [goid GO:0006493] [evidence TAS] [pmid 8918452] --- --- --- --- --- S0003431 // span:158-180,200-222,250-272,287-306,617-639,654-676,683-702,717-736 // numtm:8 S0003431 // PMT6 SGDID:S0003431, Chr VII from 897507-899786, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021398 // cdna:GeneFinder chromosome:SGD1:VII:897507:899786:1 // ensembl // 11 // --- /// YGR199W // cdna:known chromosome:SGD1:VII:897507:899786:1 gene:YGR199W // ensembl // 11 // --- --- No cerevisiae_gene 1.21324973445968 -1.1890670222384 1.16764470462759 -1.46671792225718 1.17956112265034 Max fold change below threshold 4 1.46671792225718 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776613_at YJR129C.S1 Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family 1.46656942508255 178.481101989746 279.941123962402 --- --- 5737 // cytoplasm // inferred from direct assay 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from sequence similarity 254.046676635742 183.737075805664 173.225128173828 305.835571289063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR129C /GEN=ZMS1 /DB_XREF=GI:6322589 /SEG=NC_001142:-663915,664934 /DEF=Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family /NOTE=Yjr129cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: S-adenosylmethionine-dependent methyltransferase activity [goid GO:0008757] [evidence ISS] [pmid 12872006]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003890 // YJR129C SGDID:S0003890, Chr X from 664934-663915, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024234 // cdna:Genscan chromosome:SGD1:X:663915:664934:-1 // ensembl // 11 // --- /// GENEFINDER00000024536 // cdna:GeneFinder chromosome:SGD1:X:663915:664934:-1 // ensembl // 11 // --- /// YJR129C // cdna:known chromosome:SGD1:X:663915:664934:-1 gene:YJR129C // ensembl // 11 // --- --- No cerevisiae_gene 1.28221489040647 -1.38266419840296 1.1268657124308 -1.46656942508255 1.20385582420972 Max fold change below threshold 4 1.46656942508255 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775659_at YOR075W.S1 t-SNARE required for ER membrane fusion and vesicular traffic, integral membrane protein that constitutes with Sec20p and Use1p the trimeric acceptor for R/v-SNAREs on Golgi-derived vesicles at the ER; part of Dsl1p complex 1.46601805548764 1644.21600341797 1266.9306640625 UFE1 6890 // retrograde transport, Golgi to ER // traceable author statement /// 6906 // vesicle fusion // traceable author statement 5789 // endoplasmic reticulum membrane // traceable author statement 5486 // t-SNARE activity // traceable author statement 1180.80822753906 1731.08618164063 1557.34582519531 1353.05310058594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR075W /GEN=UFE1 /DB_XREF=GI:6324649 /SEG=NC_001147:+468213,469253 /DEF=t-SNARE that resides on the endoplasmic reticulum and mediates retrograde traffic from the Golgi complex; potential Cdc28p substrate /NOTE=Ufe1p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence TAS] [pmid 10047442]; go_function: t-SNARE activity [goid GO:0005486] [evidence TAS] [pmid 10047442]; go_process: retrograde transport, Golgi to ER [goid GO:0006890] [evidence TAS] [pmid 10047442]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 10047442] --- --- --- --- --- --- S0005601 // UFE1 SGDID:S0005601, Chr XV from 468213-469253, Verified ORF // sgd // 11 // --- /// GENSCAN00000017516 // cdna:Genscan chromosome:SGD1:XV:468216:469253:1 // ensembl // 11 // --- /// GENEFINDER00000022673 // cdna:GeneFinder chromosome:SGD1:XV:468549:469253:1 // ensembl // 11 // --- /// YOR075W // cdna:known chromosome:SGD1:XV:468213:469253:1 gene:YOR075W // ensembl // 11 // --- --- No cerevisiae_gene -1.0411988642932 1.46601805548764 1.1113975847242 1.31888124495965 1.14587031918456 Max fold change below threshold 4 1.46601805548764 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771748_at YNL240C.S1 Nuclear architecture related protein; component of the cytosolic iron-sulfur (FeS) protein assembly machinery, required for maturation of cytosolic and nuclear FeS proteins; homologous to human Narf 1.46587726664195 895.398284912109 751.407348632813 NAR1 16226 // iron-sulfur cluster assembly // inferred from mutant phenotype 5829 // cytosol // inferred from direct assay /// 16020 // membrane // inferred from direct assay 16948 // iron hydrogenase activity // inferred from sequence similarity 689.783325195313 779.658874511719 1011.1376953125 813.031372070313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL240C /GEN=NAR1 /DB_XREF=GI:6324089 /SEG=NC_001146:-198501,199976 /DEF=Component of the cytosolic iron-sulfur (FeS) protein assembly machinery, required for maturation of cytosolic and nuclear FeS proteins; homologous to human Narf (Nuclear prelamin A Recognition Factor) /NOTE=Nar1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: iron hydrogenase activity [goid GO:0016948] [evidence ISS] [pmid 10514485]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005184 // NAR1 SGDID:S0005184, Chr XIV from 199976-198501, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019848 // cdna:Genscan chromosome:SGD1:XIV:198501:199976:-1 // ensembl // 11 // --- /// GENEFINDER00000020546 // cdna:GeneFinder chromosome:SGD1:XIV:198501:199976:-1 // ensembl // 11 // --- /// YNL240C // cdna:known chromosome:SGD1:XIV:198501:199976:-1 gene:YNL240C // ensembl // 11 // --- --- No cerevisiae_gene 1.1602784077385 1.1302953348299 1.15328989922496 1.46587726664195 1.17867646603388 Max fold change below threshold 4 1.46587726664195 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775610_s_at YCR096C.S1 Silenced copy of A2, encoding a protein of with similarity to Alpha2p that is required along with A1p for inhibiting expression of the HO endonuclease in a/alpha HO/HO diploid cells with an active mating-type interconversion system /// GTP/GDP exchange factor for Rsr1p (Bud1p) required for both axial and bipolar budding patterns; mutants exhibit random budding in all cell types /// Homeobox-domain containing protein which acts with Mcm1p in haploid cells to repress a-specific genes; in diploid cells Alpha2p acts together with A1p to repress transcription of haploid-specific genes /// Silenced copy of ALPHA2, encoding a homeobox-domain containing protein that associates with Mcm1p in haploid cells to repress a-specific gene expression and interacts with A1p in diploid cells to repress haploid-specific gene expression 1.46561678567853 2186.93280029297 2608.32019042969 HMRA2 /// BUD5 /// MATALPHA2 /// HMLALPHA2 282 // bud site selection // traceable author statement /// 7120 // axial bud site selection // traceable author statement /// 7121 // bipolar bud site selection // traceable author statement /// 7124 // pseudohyphal growth // traceable author statement /// 7264 // small GTPase mediated signal transduction // traceable author statement /// 6357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 7532 // regulation of transcription, mating-type specific // traceable author statement /// 7535 // donor selection // traceable author statement 131 // incipient bud site // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 5634 // nucleus // traceable author statement 4871 // signal transducer activity // traceable author statement /// 5085 // guanyl-nucleotide exchange factor activity // traceable author statement /// 5088 // Ras guanyl-nucleotide exchange factor activity // traceable author statement /// 3714 // transcription corepressor activity // traceable author statement 2689.49536132813 2538.80517578125 1835.06042480469 2527.14501953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR096C /GEN=HMRA2 /DB_XREF=GI:6319939 /SEG=NC_001135:-293175,293534 /DEF=Silenced copy of A2, encoding a protein of with similarity to Alpha2p that is required along with A1p for inhibiting expression of the HO endonuclease in a/alpha HO/HO diploid cells with an active mating-type interconversion system /NOTE=Hmra2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 2.99999988914261E-28 /// scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 8.00000021796161E-27 --- S0000572 // HMLALPHA2 SGDID:S0000572, Chr III from 13018-12386, reverse complement, Verified ORF // sgd // 11 // --- /// S0000635 // MATALPHA2 SGDID:S0000635, Chr III from 200173-199541, reverse complement, Verified ORF // sgd // 11 // --- /// S0000692 // HMRA2 SGDID:S0000692, Chr III from 293534-293175, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022417 // cdna:Genscan chromosome:SGD1:III:12386:13018:-1 // ensembl // 11 // --- /// GENSCAN00000022488 // cdna:Genscan chromosome:SGD1:III:199541:200173:-1 // ensembl // 11 // --- /// GENSCAN00000022527 // cdna:Genscan chromosome:SGD1:III:293175:293534:-1 // ensembl // 11 // --- /// YCL067C // cdna:known chromosome:SGD1:III:12386:13018:-1 gene:YCL067C // ensembl // 11 // --- /// YCR039C // cdna:known chromosome:SGD1:III:199541:200173:-1 gene:YCR039C // ensembl // 11 // --- /// YCR096C // cdna:known chromosome:SGD1:III:293175:293534:-1 gene:YCR096C // ensembl // 11 // --- --- No cerevisiae_gene -1.2103142955364 -1.05935476537718 -1.26621441054886 -1.46561678567853 -1.06424259017276 Max fold change below threshold 4 1.46561678567853 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777065_at YPL046C.S1 Elongin C, forms heterodimer with Ela1p that participates in transcription elongation; expression dramatically upregulated during sporulation; widely conserved among eukaryotes 1.46551681687191 246.00505065918 296.611236572266 ELC1 715 // nucleotide-excision repair, DNA damage recognition // inferred from mutant phenotype /// 6368 // RNA elongation from RNA polymerase II promoter // inferred from sequence similarity 113 // nucleotide excision repair factor 4 complex // inferred from direct assay /// 8023 // transcription elongation factor complex // inferred from sequence similarity 3711 // transcriptional elongation regulator activity // inferred from sequence similarity 280.120727539063 219.705596923828 272.304504394531 313.101745605469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL046C /GEN=ELC1 /DB_XREF=GI:6325211 /SEG=NC_001148:-466639,466938 /DEF=Elongin C, forms heterodimer with Ela1p that participates in transcription elongation; expression dramatically upregulated during sporulation; widely conserved among eukaryotes /NOTE=Elc1p; go_component: transcription elongation factor complex [goid GO:0008023] [evidence ISS] [pmid 10430890]; go_function: transcriptional elongation regulator activity [goid GO:0003711] [evidence ISS] [pmid 10430890]; go_process: RNA elongation from Pol II promoter [goid GO:0006368] [evidence ISS] [pmid 10430890] --- --- --- --- --- --- S0005967 // ELC1 SGDID:S0005967, Chr XVI from 466940-466641, reverse complement, Verified ORF // sgd // 11 // --- /// YPL046C // cdna:known chromosome:SGD1:XVI:466641:466940:-1 gene:YPL046C // ensembl // 11 // --- --- No cerevisiae_gene 1.07566971376826 -1.2749822101081 1.46551681687191 -1.02870398035431 1.11773858491713 Max fold change below threshold 4 1.46551681687191 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774056_at YMR031C.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.46546926101336 4151.60144042969 3503.33154296875 --- --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 3700.89306640625 4833.1494140625 3470.05346679688 3305.77001953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR031C /GEN=RSF1 /DB_XREF=GI:6323674 /SEG=NC_001145:-332211,334742 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ymr031cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004633 // YMR031C SGDID:S0004633, Chr XIII from 334742-332211, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000018742 // cdna:Genscan chromosome:SGD1:XIII:332211:334742:-1 // ensembl // 10 // --- /// GENEFINDER00000021900 // cdna:GeneFinder chromosome:SGD1:XIII:332211:334742:-1 // ensembl // 10 // --- /// YMR031C // cdna:known chromosome:SGD1:XIII:332211:334742:-1 gene:YMR031C // ensembl // 10 // --- --- No cerevisiae_gene -1.46546926101336 1.30594138423884 -1.09255180300124 -1.06652335527915 -1.11952526780161 Max fold change below threshold 4 1.46546926101336 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775678_at YLR142W.S1 Proline oxidase, nuclear-encoded mitochondrial protein involved in utilization of proline as sole nitrogen source; PUT1 transcription is induced by Put3p in the presence of proline and the absence of a preferred nitrogen source 1.46512100418916 3769.59191894531 2769.05920410156 PUT1 6537 // glutamate biosynthesis // traceable author statement /// 6562 // proline catabolism // traceable author statement 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 4657 // proline dehydrogenase activity // traceable author statement 2811.73681640625 4119.53466796875 3419.64916992188 2726.38159179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR142W /GEN=PUT1 /DB_XREF=GI:6323171 /SEG=NC_001144:+425187,426617 /DEF=proline oxidase /NOTE=Put1p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 10640599]; go_function: proline dehydrogenase activity [goid GO:0004657] [evidence TAS] [pmid 10640599]; go_process: glutamate biosynthesis [goid GO:0006537] [evidence TAS] [pmid 10640599]; go_process: proline catabolism [goid GO:0006562] [evidence TAS] [pmid 10640599] --- --- --- --- --- --- S0004132 // PUT1 SGDID:S0004132, Chr XII from 425187-426617, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024713 // cdna:GeneFinder chromosome:SGD1:XII:425187:426617:1 // ensembl // 11 // --- /// GENSCAN00000017930 // cdna:Genscan chromosome:SGD1:XII:425310:426617:1 // ensembl // 11 // --- /// YLR142W // cdna:known chromosome:SGD1:XII:425187:426617:1 gene:YLR142W // ensembl // 11 // --- --- No cerevisiae_gene -1.08954632391639 1.46512100418916 1.38110697399312 1.21620528278767 -1.03130714528964 Max fold change below threshold 4 1.46512100418916 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779450_at YNR014W.S1 Hypothetical protein 1.46483041807727 2670.16979980469 2792.34692382813 --- --- 5737 // cytoplasm // inferred from direct assay --- 2909.27319335938 2490.64404296875 2849.69555664063 2675.42065429688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR014W /GEN=PHO91 /DB_XREF=GI:6324341 /SEG=NC_001146:+652464,653102 /DEF=Hypothetical ORF /NOTE=Ynr014wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005297 // YNR014W SGDID:S0005297, Chr XIV from 652465-653103, Uncharacterized ORF // sgd // 11 // --- /// YNR014W // cdna:known chromosome:SGD1:XIV:652465:653103:1 gene:YNR014W // ensembl // 11 // --- --- No cerevisiae_gene 1.27375848862864 -1.16808068241323 -1.46483041807727 -1.02090666723325 -1.08740776471428 Max fold change below threshold 4 1.46483041807727 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772321_at YOL018C.S1 Syntaxin-like t-SNARE that forms a complex with Tlg1p and Vti1p and mediates fusion of endosome-derived vesicles with the late Golgi; binds Vps45p, which prevents Tlg2p degradation and also facilitates t-SNARE complex formation 1.46472988867939 270.471946716309 357.789962768555 TLG2 6906 // vesicle fusion // traceable author statement 138 // Golgi trans cisterna // traceable author statement /// 5769 // early endosome // traceable author statement /// 5802 // Golgi trans face // traceable author statement 5485 // v-SNARE activity // traceable author statement /// 5486 // t-SNARE activity // traceable author statement 336.306304931641 229.602951049805 311.340942382813 379.273620605469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL018C /GEN=TLG2 /DB_XREF=GI:6324555 /SEG=NC_001147:-290881,292074 /DEF=member of the syntaxin family of t-SNAREs /NOTE=Tlg2p; go_component: Golgi trans cisterna [goid GO:0000138] [evidence TAS] [pmid 10047442]; go_component: Golgi trans face [goid GO:0005802] [evidence TAS] [pmid 10047442]; go_component: early endosome [goid GO:0005769] [evidence TAS] [pmid 10047442]; go_function: t-SNARE activity [goid GO:0005486] [evidence TAS] [pmid 10047442]; go_function: v-SNARE activity [goid GO:0005485] [evidence TAS] [pmid 10047442]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 10047442] --- --- --- --- --- S0005378 // span:318-335 // numtm:1 S0005378 // TLG2 SGDID:S0005378, Chr XV from 292074-290881, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017453 // cdna:Genscan chromosome:SGD1:XV:290881:292074:-1 // ensembl // 11 // --- /// GENEFINDER00000022756 // cdna:GeneFinder chromosome:SGD1:XV:290881:292074:-1 // ensembl // 11 // --- /// YOL018C // cdna:known chromosome:SGD1:XV:290881:292074:-1 gene:YOL018C // ensembl // 11 // --- --- No cerevisiae_gene -1.34747498646575 -1.46472988867939 1.16803908499798 -1.08018657089478 1.12776244466354 Max fold change below threshold 4 1.46472988867939 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772447_at YLR251W.S1 Protein required for ethanol metabolism; induced by heat shock and localized to the inner mitochondrial membrane; homologous to mammalian peroxisomal membrane protein Mpv17 1.46437733601338 3339.5107421875 3653.22021484375 SYM1 6067 // ethanol metabolism // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay --- 4047.83569335938 3914.81884765625 2764.20263671875 3258.60473632813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR251W /GEN=SSP120 /DB_XREF=GI:6323280 /SEG=NC_001144:+641466,642059 /DEF=stress-induced yeast MPV17 homolog /NOTE=Ylr251wp --- --- --- --- --- --- S0004241 // SYM1 SGDID:S0004241, Chr XII from 641466-642059, Uncharacterized ORF // sgd // 11 // --- /// YLR251W // cdna:known chromosome:SGD1:XII:641466:642059:1 gene:YLR251W // ensembl // 11 // --- YLR252W // ensembl // 1 // Cross Hyb Matching Probes No cerevisiae_gene -1.1921435133585 -1.03397777799674 -1.23522786839959 -1.46437733601338 -1.24219904557083 Max fold change below threshold 4 1.46437733601338 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777327_at YDL090C.S1 Beta subunit of the CAAX farnesyltransferase (FTase) that prenylates the a-factor mating pheromone and Ras proteins; required for the membrane localization of Ras proteins and a-factor; homolog of the mammalian FTase beta subunit 1.46397842228131 373.50830078125 263.514251708984 RAM1 18347 // protein amino acid farnesylation // inferred from direct assay 5965 // protein farnesyltransferase complex // inferred from direct assay 4660 // protein farnesyltransferase activity // inferred from direct assay 266.037322998047 357.543701171875 389.472900390625 260.991180419922 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL090C /GEN=RAM1 /DB_XREF=GI:6320113 /SEG=NC_001136:-295034,296329 /DEF=essential for processing of ras proteins /NOTE=Ram1p; go_component: protein farnesyltransferase complex [goid GO:0005965] [evidence IDA] [pmid 8424764]; go_function: protein farnesyltransferase activity [goid GO:0004660] [evidence IDA] [pmid 9380709]; go_process: protein amino acid farnesylation [goid GO:0018347] [evidence IDA] [pmid 1763050] --- --- --- --- --- --- S0002248 // RAM1 SGDID:S0002248, Chr IV from 296329-295034, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023832 // cdna:GeneFinder chromosome:SGD1:IV:295034:296329:-1 // ensembl // 11 // --- /// GENSCAN00000025033 // cdna:Genscan chromosome:SGD1:IV:295034:296251:-1 // ensembl // 11 // --- /// YDL090C // cdna:known chromosome:SGD1:IV:295034:296329:-1 gene:YDL090C // ensembl // 11 // --- --- No cerevisiae_gene 1.312575114617 1.34396067868455 1.21752367160764 1.46397842228131 -1.01933453295244 Max fold change below threshold 4 1.46397842228131 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775708_at YDR494W.S1 Mitochondrial ribosomal protein of the small subunit; genetic interactions suggest a possible role in promoting translation initiation 1.46396967584977 1618.04479980469 1270.21478271484 RSM28 6412 // protein biosynthesis // inferred from genetic interaction /// 6412 // protein biosynthesis // inferred from physical interaction /// 6413 // translational initiation // inferred from genetic interaction 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // inferred from direct assay 1185.04711914063 1711.28918457031 1524.80041503906 1355.38244628906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR494W /GEN=IZH1 /DB_XREF=GI:27469362 /SEG=NC_001136:+1436918,1438003 /DEF=Mitochondrial ribosomal protein of the small subunit /NOTE=Ydr494wp --- --- --- --- --- --- S0002902 // RSM28 SGDID:S0002902, Chr IV from 1436920-1438005, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023651 // cdna:GeneFinder chromosome:SGD1:IV:1436920:1438005:1 // ensembl // 11 // --- /// GENSCAN00000025487 // cdna:Genscan chromosome:SGD1:IV:1437058:1438005:1 // ensembl // 11 // --- /// YDR494W // cdna:known chromosome:SGD1:IV:1436920:1438005:1 gene:YDR494W // ensembl // 11 // --- --- No cerevisiae_gene 1.36072743184782 1.44406847367496 1.46396967584977 1.28670024205014 1.14373717668877 Max fold change below threshold 4 1.46396967584977 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776876_at YPR008W.S1 Transcriptional activator involved in the transcription of TPO2, HSP30 and other genes encoding membrane stress proteins; despite sequence similarity with the transcription factor Ace1p, it is not subject to metalloregulation 1.46383933733845 1555.56787109375 1062.21411132813 HAA1 6367 // transcription initiation from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from direct assay 3704 // specific RNA polymerase II transcription factor activity // inferred from direct assay 1064.068359375 1557.62512207031 1553.51062011719 1060.35986328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR008W /GEN=HAA1 /DB_XREF=GI:6325265 /SEG=NC_001148:+573013,575097 /DEF=Transcriptional activator involved in the transcription of TPO2, HSP30 and other genes encoding membrane stress proteins; despite sequence similarity with the transcription factor Ace1p, it is not subject to metalloregulation /NOTE=Haa1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11504737]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IDA] [pmid 11504737]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence IDA] [pmid 11504737] --- --- --- --- --- --- S0006212 // HAA1 SGDID:S0006212, Chr XVI from 573015-575099, Verified ORF // sgd // 11 // --- /// GENSCAN00000017192 // cdna:Genscan chromosome:SGD1:XVI:573015:575099:1 // ensembl // 11 // --- /// GENEFINDER00000020728 // cdna:GeneFinder chromosome:SGD1:XVI:573108:575099:1 // ensembl // 11 // --- /// YPR008W // cdna:known chromosome:SGD1:XVI:573015:575099:1 gene:YPR008W // ensembl // 11 // --- --- No cerevisiae_gene -1.46162758263592 1.46383933733845 1.03275450025055 1.4599725726547 -1.00349739387747 Max fold change below threshold 4 1.46383933733845 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-YER022w3_at AFFX-YER022w3 subunit of RNA polymerase II holoenzyme/mediator complex 1.46371694882388 190.946884155273 269.625930786133 SRB4 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from direct assay 244.523345947266 178.943054199219 202.950714111328 294.728515625 4.26711332934815E-10 5.43622480364547E-10 4.53402870803643E-10 6.13256001535945E-10 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /GEN=SRB4 /DB_XREF=gb:L12026.1 /DB_XREF=spd:YER022W /NOTE=SIF corresponding to nucleotides 2119-2351 of gb:L12026.1 /DEF=Saccharomyces cerevisiae supressor protein (SRB4) gene, complete cds. --- --- --- --- --- --- S0000824 // SRB4 SGDID:S0000824, Chr V from 198811-200874, Verified ORF // sgd // 49 // --- /// GENSCAN00000016824 // cdna:Genscan chromosome:SGD1:V:198811:200874:1 // ensembl // 49 // --- /// GENEFINDER00000019772 // cdna:GeneFinder chromosome:SGD1:V:198811:200874:1 // ensembl // 49 // --- /// YER022W // cdna:known chromosome:SGD1:V:198811:200874:1 gene:YER022W // ensembl // 49 // --- --- AFFX_control cerevisiae_gene -1.46371694882388 -1.366486936537 -1.05964217538102 -1.20484102269841 1.20531851256674 Max fold change below threshold 4 1.46371694882388 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777344_at YJR148W.S1 Cytosolic branched-chain amino acid aminotransferase, homolog of murine ECA39; highly expressed during stationary phase and repressed during logarithmic phase 1.46319938467997 1497.08703613281 1913.49432373047 BAT2 9063 // amino acid catabolism // traceable author statement /// 9082 // branched chain family amino acid biosynthesis // inferred from mutant phenotype /// 9082 // branched chain family amino acid biosynthesis // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4084 // branched-chain-amino-acid transaminase activity // inferred from direct assay /// 4084 // branched-chain-amino-acid transaminase activity // inferred from sequence similarity 1853.36010742188 1266.64904785156 1727.52502441406 1973.62854003906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR148W /GEN=BAT2 /DB_XREF=GI:6322608 /SEG=NC_001142:+705659,706789 /DEF=BAT1 highly expressed during logarithmic phase and is repressed during stationary phase, whereas BAT2 has the opposite pattern of expression. /NOTE=Bat2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: branched-chain-amino-acid transaminase activity [goid GO:0004084] [evidence IDA,ISS] [pmid 8798704]; go_process: amino acid catabolism [goid GO:0009063] [evidence TAS] [pmid 9748245]; go_process: branched chain family amino acid biosynthesis [goid GO:0009082] [evidence IDA,IMP] [pmid 8798704] --- --- --- --- --- --- S0003909 // BAT2 SGDID:S0003909, Chr X from 705659-706789, Verified ORF // sgd // 11 // --- /// X86568 // S.cerevisiae mRNA for Twt2p protein. // gb // 10 // --- /// GENSCAN00000024251 // cdna:Genscan chromosome:SGD1:X:705659:706789:1 // ensembl // 11 // --- /// GENEFINDER00000024535 // cdna:GeneFinder chromosome:SGD1:X:705659:706789:1 // ensembl // 11 // --- /// YJR148W // cdna:known chromosome:SGD1:X:705659:706789:1 gene:YJR148W // ensembl // 11 // --- --- No cerevisiae_gene -1.29322329564523 -1.46319938467997 1.42353277007041 -1.07284125047653 1.06489210172139 Max fold change below threshold 4 1.46319938467997 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775797_at YJL210W.S1 RING-finger peroxin, peroxisomal membrane protein with a C-terminal zinc-binding RING domain, forms putative translocation subcomplex with Pex10p and Pex12p which functions in peroxisomal matrix protein import 1.46304467043707 1184.29476928711 967.316528320313 PEX2 7031 // peroxisome organization and biogenesis // traceable author statement 5778 // peroxisomal membrane // traceable author statement 5515 // protein binding // traceable author statement 940.122131347656 993.148864746094 1375.44067382813 994.510925292969 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL210W /GEN=PEX2 /DB_XREF=GI:6322250 /SEG=NC_001142:+36919,37734 /DEF=Pex2p, Pex10p, and Pex12p together make up the RING finger complex of the peroxisomal import machinery. /NOTE=Pex2p; go_component: peroxisomal membrane [goid GO:0005778] [evidence TAS] [pmid 12667447]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 12667447]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence TAS] --- --- --- --- --- --- S0003746 // PEX2 SGDID:S0003746, Chr X from 36919-37734, Verified ORF // sgd // 11 // --- /// GENSCAN00000023980 // cdna:Genscan chromosome:SGD1:X:36919:37734:1 // ensembl // 11 // --- /// YJL210W // cdna:known chromosome:SGD1:X:36919:37734:1 gene:YJL210W // ensembl // 11 // --- YJL211C // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene -1.15303594766912 1.0564040900967 -1.11400164681437 1.46304467043707 1.05785290243869 Max fold change below threshold 4 1.46304467043707 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771184_at YDR200C.S1 Cytoplasmic protein required for cytoplasm to vacuole targeting of proteins; forms a complex with Far3p, Far7p, Far10p, and Far11p that is involved in pheromone-induced cell cycle arrest; also localized to the endoplasmic reticulum membrane 1.4626831784792 328.554191589355 356.895095825195 VPS64 751 // cell cycle arrest in response to pheromone // inferred from mutant phenotype /// 751 // cell cycle arrest in response to pheromone // inferred from physical interaction /// 6623 // protein-vacuolar targeting // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // inferred from direct assay --- 341.109497070313 423.900329589844 233.208053588867 372.680694580078 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR200C /GEN=VPS64 /DB_XREF=GI:6320406 /SEG=NC_001136:-854272,856086 /DEF=Vps64p /NOTE=go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 12514182]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell cycle arrest in response to pheromone [goid GO:0000751] [evidence IMP,IPI] [pmid 12588993]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 12134085] --- --- --- --- --- --- S0002608 // VPS64 SGDID:S0002608, Chr IV from 856088-854274, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023439 // cdna:GeneFinder chromosome:SGD1:IV:854274:856004:-1 // ensembl // 11 // --- /// GENSCAN00000025249 // cdna:Genscan chromosome:SGD1:IV:854274:856004:-1 // ensembl // 11 // --- /// YDR200C // cdna:known chromosome:SGD1:IV:854274:856088:-1 gene:YDR200C // ensembl // 11 // --- YDR199W // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene -1.25133401280366 1.24271042943863 1.30728082082216 -1.4626831784792 1.09255443715558 Max fold change below threshold 4 1.4626831784792 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778733_at YBR279W.S1 RNA polymerase II-associated protein, defines a large complex that is biochemically and functionally distinct from the Srb-Mediator form of Pol II holoenzyme and is required for full expression of a subset of cell cycle-regulated genes 1.46262545303114 1161.41784667969 848.530578613281 PAF1 6368 // RNA elongation from RNA polymerase II promoter // inferred from physical interaction /// 16571 // histone methylation // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 8023 // transcription elongation factor complex // inferred from physical interaction /// 16593 // Cdc73/Paf1 complex // traceable author statement 16944 // RNA polymerase II transcription elongation factor activity // inferred from physical interaction 840.405090332031 1229.19787597656 1093.63781738281 856.656066894531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR279W /GEN=PAF1 /DB_XREF=GI:6319756 /SEG=NC_001134:+761215,762552 /DEF=RNA polymerase II-associated protein, defines a large complex that is biochemically and functionally distinct from the Srb-Mediator form of Pol II holoenzyme and is required for full expression of a subset of cell cycle-regulated genes /NOTE=Paf1p; go_component: Cdc73/Paf1 complex [goid GO:0016593] [evidence TAS] [pmid 12773564]; go_component: transcription elongation factor complex [goid GO:0008023] [evidence IPI] [pmid 12242279]; go_function: Pol II transcription elongation factor activity [goid GO:0016944] [evidence IPI] [pmid 12242279]; go_process: RNA elongation from Pol II promoter [goid GO:0006368] [evidence IPI] [pmid 12242279] --- --- --- --- --- --- S0000483 // PAF1 SGDID:S0000483, Chr II from 761253-762590, Verified ORF // sgd // 11 // --- /// GENSCAN00000021361 // cdna:Genscan chromosome:SGD1:II:761253:762590:1 // ensembl // 11 // --- /// GENEFINDER00000022366 // cdna:GeneFinder chromosome:SGD1:II:761253:762590:1 // ensembl // 11 // --- /// YBR279W // cdna:known chromosome:SGD1:II:761253:762590:1 gene:YBR279W // ensembl // 11 // --- --- No cerevisiae_gene 1.03052124245154 1.46262545303114 1.1053670014308 1.30132221944388 1.01933707535741 Max fold change below threshold 4 1.46262545303114 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775408_at YDR493W.S1 The authentic, non-tagged protein was localized to the mitochondria 1.46239797229174 444.957412719727 380.476013183594 --- --- 5739 // mitochondrion // inferred from direct assay --- 365.733856201172 456.103942871094 433.810882568359 395.218170166016 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR493W /GEN=IZH1 /DB_XREF=GI:6320701 /SEG=NC_001136:+1436205,1436576 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ydr493wp --- --- --- --- --- --- S0002901 // FMP36 SGDID:S0002901, Chr IV from 1436207-1436578, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023784 // cdna:GeneFinder chromosome:SGD1:IV:1436207:1436578:1 // ensembl // 11 // --- /// GENSCAN00000025486 // cdna:Genscan chromosome:SGD1:IV:1436207:1436578:1 // ensembl // 11 // --- /// YDR493W // cdna:known chromosome:SGD1:IV:1436207:1436578:1 gene:YDR493W // ensembl // 11 // --- --- No cerevisiae_gene -1.00122810434075 1.24709248306565 1.46239797229174 1.1861381581522 1.08061685694372 Max fold change below threshold 4 1.46239797229174 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775354_at YGL220W.S1 Hypothetical protein 1.46207254005561 966.716613769531 1041.15466308594 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1015.78442382813 907.787719726563 1025.6455078125 1066.52490234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL220W /GEN=NIF3 /DB_XREF=GI:6321218 /SEG=NC_001139:+82372,82734 /DEF=Hypothetical ORF /NOTE=Ygl220wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003188 // YGL220W SGDID:S0003188, Chr VII from 82373-82735, Uncharacterized ORF // sgd // 11 // --- /// YGL220W // cdna:known chromosome:SGD1:VII:82373:82735:1 gene:YGL220W // ensembl // 11 // --- --- No cerevisiae_gene 1.46207254005561 -1.11896691457128 1.33318760300366 1.0097078511474 1.04995201474384 Max fold change below threshold 4 1.46207254005561 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774376_at YDR158W.S1 Aspartic beta semi-aldehyde dehydrogenase, catalyzes the second step in the common pathway for methionine and threonine biosynthesis; expression regulated by Gcn4p and the general control of amino acid synthesis 1.46198339262125 4273.76647949219 5376.41625976563 HOM2 6555 // methionine metabolism // traceable author statement /// 6566 // threonine metabolism // traceable author statement /// 9090 // homoserine biosynthesis // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4073 // aspartate-semialdehyde dehydrogenase activity // traceable author statement 5910.7060546875 4085.15747070313 4462.37548828125 4842.12646484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR158W /GEN=HOM2 /DB_XREF=GI:6320362 /SEG=NC_001136:+770351,771448 /DEF=Aspartic beta semi-aldehyde dehydrogenase, catalyzes the second step in the common pathway for methionine and threonine biosynthesis; expression regulated by Gcn4p and the general control of amino acid synthesis /NOTE=Hom2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: aspartate-semialdehyde dehydrogenase activity [goid GO:0004073] [evidence TAS] [pmid 2570346]; go_process: homoserine biosynthesis [goid GO:0009090] [evidence TAS]; go_process: methionine metabolism [goid GO:0006555] [evidence TAS] [pmid 2570346]; go_process: threonine metabolism [goid GO:0006566] [evidence TAS] [pmid 2570346] --- --- --- --- --- --- S0002565 // HOM2 SGDID:S0002565, Chr IV from 770352-771449, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023830 // cdna:GeneFinder chromosome:SGD1:IV:770352:771449:1 // ensembl // 11 // --- /// GENSCAN00000025214 // cdna:Genscan chromosome:SGD1:IV:770352:771449:1 // ensembl // 11 // --- /// YDR158W // cdna:known chromosome:SGD1:IV:770352:771449:1 gene:YDR158W // ensembl // 11 // --- --- No cerevisiae_gene -1.10552255968595 -1.44687349192201 -1.46198339262125 -1.32456492516368 -1.22068394900508 Max fold change below threshold 4 1.46198339262125 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774361_at YNR041C.S1 Para hydroxybenzoate: polyprenyl transferase, catalyzes the second step in ubiquinone (coenzyme Q) biosynthesis 1.46174458709291 555.963790893555 466.23698425293 COQ2 6743 // ubiquinone metabolism // inferred from mutant phenotype 5743 // mitochondrial inner membrane // traceable author statement 4659 // prenyltransferase activity // inferred from mutant phenotype /// 5386 // carrier activity // traceable author statement /// 19840 // isoprenoid binding // traceable author statement 426.963073730469 487.816619873047 624.110961914063 505.510894775391 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR041C /GEN=COQ2 /DB_XREF=GI:6324370 /SEG=NC_001146:-700540,701658 /DEF=Para hydroxybenzoate: polyprenyl transferase, catalyzes the second step in ubiquinone (coenzyme Q) biosynthesis /NOTE=Coq2p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence TAS] [pmid 10469659]; go_function: carrier activity [goid GO:0005386] [evidence TAS] [pmid 10469659]; go_function: isoprenoid binding [goid GO:0019840] [evidence TAS] [pmid 9708911]; go_function: prenyltransferase activity [goid GO:0004659] [evidence IMP] [pmid 1740455]; go_process: ubiquinone metabolism [goid GO:0006743] [evidence IMP] [pmid 1740455] --- --- --- --- --- S0005324 // span:115-137,188-210,223-245,302-324,345-367 // numtm:5 S0005324 // COQ2 SGDID:S0005324, Chr XIV from 701659-700541, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020614 // cdna:GeneFinder chromosome:SGD1:XIV:700541:701338:-1 // ensembl // 11 // --- /// YNR041C // cdna:known chromosome:SGD1:XIV:700541:701659:-1 gene:YNR041C // ensembl // 11 // --- --- No cerevisiae_gene -1.1970077556773 1.14252648504445 1.26786944437337 1.46174458709291 1.18396865180549 Max fold change below threshold 4 1.46174458709291 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769707_at YNL118C.S1 Protein required for the decapping of mRNAs, functions to allow the production of active Dcp1p, contains a pyrophosphatase MutT motif and several alpha-helical leucine-rich motifs 1.46163359292281 994.734313964844 1169.30316162109 DCP2 290 // deadenylylation-dependent decapping // inferred from direct assay /// 290 // deadenylylation-dependent decapping // inferred from mutant phenotype /// 6402 // mRNA catabolism // traceable author statement /// 31087 // deadenylylation-independent decapping // inferred from mutant phenotype 932 // cytoplasmic mRNA processing body // inferred from direct assay /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3729 // mRNA binding // inferred from physical interaction /// 8047 // enzyme activator activity // inferred from direct assay /// 16787 // hydrolase activity // inferred from direct assay 1197.45581054688 1170.21008300781 819.258544921875 1141.15051269531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL118C /GEN=DCP2 /DB_XREF=GI:6324211 /SEG=NC_001146:-402652,405564 /DEF=Protein required for the decapping of mRNAs, functions to allow the production of active Dcp1p, contains a pyrophosphatase MutT motif and several alpha-helical leucine-rich motifs /NOTE=Dcp2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytoplasmic mRNA processing body [goid GO:0000932] [evidence IDA] [pmid 12730603]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: enzyme activator activity [goid GO:0008047] [evidence IDA] [pmid 11139489]; go_function: hydrolase activity [goid GO:0016787] [evidence IDA] [pmid 12486012]; go_function: mRNA binding [goid GO:0003729] [evidence IPI] [pmid 11139489]; go_process: deadenylation-dependent decapping [goid GO:0000290] [evidence IMP] [pmid 10508173]; go_process: deadenylation-dependent decapping [goid GO:0000290] [evidence IDA] [pmid 11139489]; go_process: mRNA catabolism [goid GO:0006402] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0005062 // DCP2 SGDID:S0005062, Chr XIV from 405564-402652, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019938 // cdna:Genscan chromosome:SGD1:XIV:402652:405564:-1 // ensembl // 11 // --- /// GENEFINDER00000020442 // cdna:GeneFinder chromosome:SGD1:XIV:402652:405564:-1 // ensembl // 11 // --- /// YNL118C // cdna:known chromosome:SGD1:XIV:402652:405564:-1 gene:YNL118C // ensembl // 11 // --- --- No cerevisiae_gene -1.33240590444046 -1.02328276600474 -1.16160060855931 -1.46163359292281 -1.04934081632981 Max fold change below threshold 4 1.46163359292281 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774605_at YBR036C.S1 Endoplasmic reticulum membrane protein, required for mannosylation of inositolphosphorylceramide and for growth at high calcium concentrations 1.4614841180051 4128.10241699219 2862.92724609375 CSG2 6688 // glycosphingolipid biosynthesis // inferred from sequence similarity /// 6874 // calcium ion homeostasis // inferred from mutant phenotype 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay 30234 // enzyme regulator activity // inferred from physical interaction /// 30234 // enzyme regulator activity // inferred from mutant phenotype 3040.76000976563 4444.0224609375 3812.18237304688 2685.09448242188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR036C /GEN=CSG2 /DB_XREF=GI:6319510 /SEG=NC_001134:-309043,310275 /DEF=Endoplasmic reticulum membrane protein, required for mannosylation of inositolphosphorylceramide and for growth at high calcium concentrations /NOTE=Csg2p; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA] [pmid 7854312]; go_function: enzyme regulator activity [goid GO:0030234] [evidence IMP,IPI] [pmid 12954640]; go_process: calcium ion homeostasis [goid GO:0006874] [evidence IMP] [pmid 7854312] --- --- --- --- --- AAA34533.1 // span:53-75,130-152,167-189,196-215,246-268,288-305,325-347,386-403 // numtm:8 /// S0000240 // span:53-75,130-152,167-189,196-215,246-268,288-305,325-347,386-403 // numtm:8 S0000240 // CSG2 SGDID:S0000240, Chr II from 310313-309081, reverse complement, Verified ORF // sgd // 11 // --- /// L24113 // Saccharomyces cerevisiae Ca2+ regulatory protein (CSG2p) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000021168 // cdna:Genscan chromosome:SGD1:II:309081:310313:-1 // ensembl // 11 // --- /// GENEFINDER00000022223 // cdna:GeneFinder chromosome:SGD1:II:309081:310313:-1 // ensembl // 11 // --- /// YBR036C // cdna:known chromosome:SGD1:II:309081:310313:-1 gene:YBR036C // ensembl // 11 // --- --- No cerevisiae_gene -1.02288369041731 1.4614841180051 1.14427296514086 1.25369393204454 -1.13245922244902 Max fold change below threshold 4 1.4614841180051 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775109_at YNL148C.S1 Alpha-tubulin folding protein, similar to mammalian cofactor B; Alf1p-GFP localizes to cytoplasmic microtubules; required for the folding of alpha-tubulin and may play an additional role in microtubule maintenance 1.46133679830262 106.674396514893 134.20503616333 ALF1 7023 // post-chaperonin tubulin folding pathway // inferred from mutant phenotype /// 7023 // post-chaperonin tubulin folding pathway // inferred from physical interaction /// 7024 // alpha-tubulin folding // inferred from mutant phenotype /// 7024 // alpha-tubulin folding // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8017 // microtubule binding // inferred from physical interaction /// 43014 // alpha-tubulin binding // inferred from physical interaction 126.12393951416 86.3072357177734 127.041557312012 142.2861328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL148C /GEN=ALF1 /DB_XREF=GI:6324181 /SEG=NC_001146:-349907,350671 /DEF=alpha-tubulin foldin; protein implicated in folding of alpha tubulin /NOTE=Alf1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: microtubule [goid GO:0005874] [evidence IDA] [pmid 9885248]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: co-chaperone activity [goid GO:0003767] [evidence IPI] [pmid 9885248]; go_process: alpha-tubulin folding [goid GO:0007024] [evidence IMP,IPI] [pmid 9885248]; go_process: post-chaperonin tubulin folding pathway [goid GO:0007023] [evidence IMP,IPI] [pmid 9885248] --- --- --- --- --- --- S0005092 // ALF1 SGDID:S0005092, Chr XIV from 350671-349907, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000019919 // cdna:Genscan chromosome:SGD1:XIV:349907:350671:-1 // ensembl // 10 // --- /// GENEFINDER00000020634 // cdna:GeneFinder chromosome:SGD1:XIV:349907:350671:-1 // ensembl // 10 // --- /// YNL148C // cdna:known chromosome:SGD1:XIV:349907:350671:-1 gene:YNL148C // ensembl // 10 // --- --- No cerevisiae_gene 1.02033576635183 -1.46133679830262 -1.07234175462131 1.00727552438804 1.12814532562651 Max fold change below threshold 4 1.46133679830262 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770886_at YLR030W.S1 Hypothetical protein 1.46112310845512 24.5310010910034 24.9277944564819 --- --- --- --- 28.3910827636719 29.6310024261475 19.4309997558594 21.464506149292 0.000244141003349796 0.0805663987994194 0.0461426004767418 0.00122069998178631 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR030W /GEN=RPL15A /DB_XREF=GI:6323058 /SEG=NC_001144:+203291,204082 /DEF=Hypothetical ORF /NOTE=Ylr030wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004020 // YLR030W SGDID:S0004020, Chr XII from 203291-204082, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000024619 // cdna:GeneFinder chromosome:SGD1:XII:203291:204082:1 // ensembl // 11 // --- /// YLR030W // cdna:known chromosome:SGD1:XII:203291:204082:1 gene:YLR030W // ensembl // 11 // --- --- No cerevisiae_gene -1.08973719983203 1.04367285576238 -1.0211496205274 -1.46112310845512 -1.32269909059186 Max fold change below threshold 4 1.46112310845512 Max fold change below threshold PPAPPP No 2 0 PAPP 1 3 0 No No 2 < x = 3
1773622_at YOL009C.S1 Mitochondrial outer membrane protein, required for transmission of mitochondria to daughter cells; exists in a complex with Mmm1p and Mdm10p 1.4610250150518 526.907501220703 458.663330078125 MDM12 1 // mitochondrion inheritance // traceable author statement /// 7005 // mitochondrion organization and biogenesis // traceable author statement 5741 // mitochondrial outer membrane // traceable author statement --- 440.069519042969 410.862426757813 642.952575683594 477.257141113281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL009C /GEN=MDM12 /DB_XREF=GI:6324565 /SEG=NC_001147:-309324,310139 /DEF=Required for normal mitochondrial morphology and distribution /NOTE=Mdm12p; go_component: mitochondrial outer membrane [goid GO:0005741] [evidence TAS] [pmid 9891785]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 9891785]; go_process: mitochondrion inheritance [goid GO:0000001] [evidence TAS] [pmid 9891785]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence TAS] [pmid 9891785] --- --- --- --- --- --- S0005369 // MDM12 SGDID:S0005369, Chr XV from 310139-309324, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017461 // cdna:Genscan chromosome:SGD1:XV:309324:310139:-1 // ensembl // 11 // --- /// GENEFINDER00000022753 // cdna:GeneFinder chromosome:SGD1:XV:309324:310139:-1 // ensembl // 11 // --- /// YOL009C // cdna:known chromosome:SGD1:XV:309324:310139:-1 gene:YOL009C // ensembl // 11 // --- --- No cerevisiae_gene -1.24580834875382 -1.07108727978763 1.3983519505072 1.4610250150518 1.08450397144339 Max fold change below threshold 4 1.4610250150518 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777257_at YOR197W.S1 Putative cysteine protease similar to mammalian caspases, involved in regulation of apoptosis upon hydrogen peroxide treatment 1.46095657021829 2986.41809082031 2057.521484375 MCA1 6915 // apoptosis // inferred from direct assay 5634 // nucleus // inferred from direct assay 30693 // caspase activity // inferred from direct assay 2061.25317382813 3011.4013671875 2961.43481445313 2053.78979492188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR197W /GEN=MCA1 /DB_XREF=GI:6324771 /SEG=NC_001147:+717023,718384 /DEF=metacaspase /NOTE=Mca1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12062425]; go_function: caspase activity [goid GO:0030693] [evidence IDA] [pmid 11983181]; go_process: apoptosis [goid GO:0006915] [evidence IDA] [pmid 11983181] --- --- --- --- --- --- S0005723 // MCA1 SGDID:S0005723, Chr XV from 717023-718384, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022651 // cdna:GeneFinder chromosome:SGD1:XV:717029:718384:1 // ensembl // 11 // --- /// GENSCAN00000017616 // cdna:Genscan chromosome:SGD1:XV:717086:718384:1 // ensembl // 11 // --- /// YOR197W // cdna:known chromosome:SGD1:XV:717023:718384:1 gene:YOR197W // ensembl // 11 // --- --- No cerevisiae_gene -1.10178139677976 1.46095657021829 -1.07874014892885 1.43671570870317 -1.00363395461634 Max fold change below threshold 4 1.46095657021829 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779572_at YML041C.S1 Protein of unknown function, component of the Swr1p complex that incorporates Htz1p into chromatin; required for vacuolar protein sorting 1.46092279826921 628.002868652344 764.389709472656 VPS71 6338 // chromatin remodeling // inferred from direct assay /// 6338 // chromatin remodeling // inferred from genetic interaction /// 6338 // chromatin remodeling // inferred from physical interaction /// 6623 // protein-vacuolar targeting // inferred from mutant phenotype 812 // SWR1 complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay --- 739.464660644531 575.999206542969 680.006530761719 789.314758300781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML041C /GEN=VPS71 /DB_XREF=GI:6323600 /SEG=NC_001145:-194913,195755 /DEF=Protein of unknown function, component of the Swr1p complex that incorporates Htz1p into chromatin; required for vacuolar protein sorting /NOTE=Vps71p; go_component: SWR1 complex [goid GO:0000812] [evidence IPI] [pmid 14690608]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 14645854]; go_process: chromatin remodeling [goid GO:0006338] [evidence IGI,IPI] [pmid 14690608]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 12134085] --- --- --- --- --- --- S0004505 // VPS71 SGDID:S0004505, Chr XIII from 195755-194913, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018683 // cdna:Genscan chromosome:SGD1:XIII:194913:195755:-1 // ensembl // 11 // --- /// YML041C // cdna:known chromosome:SGD1:XIII:194913:195755:-1 gene:YML041C // ensembl // 11 // --- --- No cerevisiae_gene 1.46092279826921 -1.28379458208397 1.18529087262489 -1.08743758654231 1.06741376607883 Max fold change below threshold 4 1.46092279826921 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778081_at YML005W.S1 S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family; required for wybutosine formation in phenylalanine-accepting tRNA 1.46082335880761 595.044128417969 894.350799560547 TRM12 30488 // tRNA methylation // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from sequence similarity /// 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from direct assay 824.20654296875 625.881408691406 564.206848144531 964.495056152344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML005W /GEN=GIS4 /DB_XREF=GI:6323638 /SEG=NC_001145:+260221,261609 /DEF=tRNA methyltransferase, has a role in tRNA modification /NOTE=Yml005wp --- --- --- --- --- --- S0004464 // TRM12 SGDID:S0004464, Chr XIII from 260221-261609, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018714 // cdna:Genscan chromosome:SGD1:XIII:260236:261609:1 // ensembl // 11 // --- /// YML005W // cdna:known chromosome:SGD1:XIII:260221:261609:1 gene:YML005W // ensembl // 11 // --- --- No cerevisiae_gene 1.12052007583051 -1.31687334297403 -1.04788145789598 -1.46082335880761 1.1702103852249 Max fold change below threshold 4 1.46082335880761 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778744_at YBL103C.S1 Basic helix-loop-helix-leucine zipper (bHLH/Zip) transcription factor that forms a complex with another bHLH/Zip protein, Rtg1p, to activate the retrograde (RTG) and TOR pathways 1.46062593742108 532.160766601563 565.002777099609 RTG3 6367 // transcription initiation from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3704 // specific RNA polymerase II transcription factor activity // inferred from direct assay 553.189697265625 521.507080078125 542.814453125 576.815856933594 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL103C /GEN=RTG3 /DB_XREF=GI:6319365 /SEG=NC_001134:-22075,23535 /DEF=bHLH/Zip transcription factor which regulates CIT2 gene expression /NOTE=Rtg3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10848632]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10848632]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IDA] [pmid 9032238]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence IDA] [pmid 10848632] --- --- --- --- --- --- S0000199 // RTG3 SGDID:S0000199, Chr II from 23535-22075, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021057 // cdna:Genscan chromosome:SGD1:II:22075:23532:-1 // ensembl // 11 // --- /// GENEFINDER00000022376 // cdna:GeneFinder chromosome:SGD1:II:22075:23535:-1 // ensembl // 11 // --- /// YBL103C // cdna:known chromosome:SGD1:II:22075:23535:-1 gene:YBL103C // ensembl // 11 // --- --- No cerevisiae_gene -1.46062593742108 -1.06075203654523 1.28210186838139 -1.01911379492734 1.04270896545028 Max fold change below threshold 4 1.46062593742108 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771986_at YGR201C.S1 Hypothetical protein 1.46048692692423 3948.82165527344 2813.17700195313 --- --- --- --- 2854.0107421875 3940.46240234375 3957.18090820313 2772.34326171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR201C /GEN=ELP2 /DB_XREF=GI:37362656 /SEG=NC_001139:-902523,903200 /DEF=Hypothetical ORF /NOTE=Ygr201cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003433 // YGR201C SGDID:S0003433, Chr VII from 903202-902525, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019497 // cdna:Genscan chromosome:SGD1:VII:902525:903349:-1 // ensembl // 11 // --- /// GENEFINDER00000021676 // cdna:GeneFinder chromosome:SGD1:VII:902525:903202:-1 // ensembl // 11 // --- /// YGR201C // cdna:known chromosome:SGD1:VII:902525:903202:-1 gene:YGR201C // ensembl // 11 // --- --- No cerevisiae_gene -1.46048692692423 1.38067539273644 1.43449707733805 1.38653329145148 -1.0294579252131 Max fold change below threshold 4 1.46048692692423 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776883_at YNL305C.S1 Hypothetical protein 1.46035086060859 4355.9755859375 4425.24584960938 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 4737.10009765625 4480.67578125 4231.275390625 4113.3916015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL305C /GEN=MRPS18 /DB_XREF=GI:6324024 /SEG=NC_001146:-58898,59791 /DEF=Hypothetical ORF /NOTE=Ynl305cp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005249 // span:55-74,86-105,147-166,173-192,207-229,236-254,269-291 // numtm:7 S0005249 // YNL305C SGDID:S0005249, Chr XIV from 59791-58898, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019797 // cdna:Genscan chromosome:SGD1:XIV:58898:59791:-1 // ensembl // 11 // --- /// GENEFINDER00000020559 // cdna:GeneFinder chromosome:SGD1:XIV:58898:59791:-1 // ensembl // 11 // --- /// YNL305C // cdna:known chromosome:SGD1:XIV:58898:59791:-1 gene:YNL305C // ensembl // 11 // --- --- No cerevisiae_gene -1.46035086060859 -1.05722893798281 -1.10327859158165 -1.1195442651055 -1.15162876684457 Max fold change below threshold 4 1.46035086060859 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773800_at YHR101C.S1 Integral membrane protein of the endoplasmic reticulum, required for normal content of cell wall beta-1,6-glucan 1.45977648668008 397.974822998047 519.501434326172 BIG1 9272 // cell wall biosynthesis (sensu Fungi) // inferred from genetic interaction /// 9272 // cell wall biosynthesis (sensu Fungi) // inferred from mutant phenotype 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay --- 481.377868652344 329.761352539063 466.188293457031 557.625 0.00122069998178631 0.014160200022161 0.00415039015933871 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR101C /GEN=BIG1 /DB_XREF=GI:6321893 /SEG=NC_001140:-314876,315970 /DEF=bad in glucose or big cells /NOTE=Big1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 12112232]; go_component: integral to membrane [goid GO:0016021] [evidence IDA] [pmid 12112232]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall biosynthesis (sensu Fungi) [goid GO:0009272] [evidence IGI,IMP] [pmid 12112232] --- --- --- --- --- S0001143 // span:276-295 // numtm:1 S0001143 // BIG1 SGDID:S0001143, Chr VIII from 315970-315861,315773-314876, reverse complement, intron sequence removed, Verified ORF // sgd // 9 // --- /// YHR101C // cdna:known chromosome:SGD1:VIII:314876:315970:-1 gene:YHR101C // ensembl // 9 // --- --- No cerevisiae_gene -1.24209066154138 -1.45977648668008 1.18899731770234 -1.03258248954017 1.15839351227574 Max fold change below threshold 4 1.45977648668008 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1774434_at YDR131C.S1 Hypothetical protein 1.45926765452392 187.47046661377 192.737243652344 --- 6511 // ubiquitin-dependent protein catabolism // inferred from sequence similarity 151 // ubiquitin ligase complex // inferred from sequence similarity 5515 // protein binding // inferred from sequence similarity 197.880310058594 205.461166381836 169.479766845703 187.594177246094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR131C /GEN=FIN1 /DB_XREF=GI:6320336 /SEG=NC_001136:-716784,718454 /DEF=Hypothetical ORF /NOTE=Ydr131cp; go_component: ubiquitin ligase complex [goid GO:0000151] [evidence ISS] [pmid 9635407]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 9635407]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence ISS] [pmid 9635407] --- --- --- --- --- --- S0002538 // YDR131C SGDID:S0002538, Chr IV from 718455-716785, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDR131C // cdna:known chromosome:SGD1:IV:716785:718455:-1 gene:YDR131C // ensembl // 11 // --- --- No cerevisiae_gene -1.45926765452392 1.03831031152618 1.17217073592774 -1.1675748305622 -1.0548318341406 Max fold change below threshold 4 1.45926765452392 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774253_at YNL185C.S1 Mitochondrial ribosomal protein of the large subunit 1.4590626823184 432.194000244141 586.923126220703 MRPL19 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 565.919555664063 429.493804931641 434.894195556641 607.926696777344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL185C /GEN=MRPL19 /DB_XREF=GI:6324144 /SEG=NC_001146:-292193,292669 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl19p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0005129 // MRPL19 SGDID:S0005129, Chr XIV from 292669-292193, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019893 // cdna:Genscan chromosome:SGD1:XIV:292193:292669:-1 // ensembl // 11 // --- /// YNL185C // cdna:known chromosome:SGD1:XIV:292193:292669:-1 gene:YNL185C // ensembl // 11 // --- GENEFINDER00000020521 // ensembl // 6 // Cross Hyb Matching Probes /// YNL184C // ensembl // 2 // Cross Hyb Matching Probes /// GENEFINDER00000020636 // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene -1.4590626823184 -1.3176431165384 1.17578973570609 -1.30128100454345 1.07422811368303 Max fold change below threshold 4 1.4590626823184 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779017_at YMR313C.S1 Triacylglycerol lipase of the lipid particle, responsible for all the TAG lipase activity of the lipid particle; contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes 1.45892004736028 1787.81451416016 1825.71911621094 TGL3 6629 // lipid metabolism // inferred from mutant phenotype 5811 // lipid particle // inferred from direct assay 4806 // triacylglycerol lipase activity // inferred from direct assay /// 4806 // triacylglycerol lipase activity // inferred from mutant phenotype 1854.60046386719 1876.27001953125 1699.35900878906 1796.83776855469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR313C /GEN=TGL3 /DB_XREF=GI:6323973 /SEG=NC_001145:-899378,901306 /DEF=Triacylglycerol lipase of the lipid particle /NOTE=Tgl3p; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 10515935]; go_function: triacylglycerol lipase activity [goid GO:0004806] [evidence IDA,IMP] [pmid 12682047]; go_process: lipid metabolism [goid GO:0006629] [evidence IMP] [pmid 10515935] --- --- --- --- --- S0004930 // span:197-219 // numtm:1 S0004930 // TGL3 SGDID:S0004930, Chr XIII from 901306-899378, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018979 // cdna:Genscan chromosome:SGD1:XIII:899378:901306:-1 // ensembl // 11 // --- /// GENEFINDER00000021968 // cdna:GeneFinder chromosome:SGD1:XIII:899378:899923:-1 // ensembl // 10 // --- /// YMR313C // cdna:known chromosome:SGD1:XIII:899378:901306:-1 gene:YMR313C // ensembl // 11 // --- --- No cerevisiae_gene -1.45892004736028 1.01168421775269 1.09756605179779 -1.09135294794991 -1.03214686173864 Max fold change below threshold 4 1.45892004736028 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773353_at YER165W.S1 Poly(A) binding protein, part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G 1.45878402883099 2394.57873535156 3108.43188476563 PAB1 6446 // regulation of translational initiation // inferred from mutant phenotype /// 6446 // regulation of translational initiation // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5840 // ribosome // inferred from direct assay 8143 // poly(A) binding // inferred from mutant phenotype /// 8143 // poly(A) binding // inferred from direct assay 3370.28686523438 2310.33984375 2478.81762695313 2846.57690429688 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER165W /GEN=PAB1 /DB_XREF=GI:6321013 /SEG=NC_001137:+510368,512101 /DEF=Poly(A) binding protein, cytoplasmic and nuclear /NOTE=Pab1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_component: ribosome [goid GO:0005840] [evidence IDA] [pmid 8631901]; go_function: poly(A) binding [goid GO:0008143] [evidence IDA,IMP] [pmid 9193001]; go_process: regulation of translational initiation [goid GO:0006446] [evidence IDA,IMP] [pmid 10357826] --- --- --- --- --- --- S0000967 // PAB1 SGDID:S0000967, Chr V from 510368-512101, Verified ORF // sgd // 11 // --- /// GENSCAN00000016944 // cdna:Genscan chromosome:SGD1:V:510701:512101:1 // ensembl // 11 // --- /// GENEFINDER00000019647 // cdna:GeneFinder chromosome:SGD1:V:510701:512101:1 // ensembl // 11 // --- /// YER165W // cdna:known chromosome:SGD1:V:510368:512101:1 gene:YER165W // ensembl // 11 // --- --- No cerevisiae_gene 1.13078782254878 -1.45878402883099 -1.21466996498717 -1.35963486324608 -1.18397885549727 Max fold change below threshold 4 1.45878402883099 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772781_at YOR056C.S1 Essential nuclear protein involved in proteasome maturation and synthesis of 40S ribosomal subunits; required for cleavage of the 20S pre-rRNA to generate the mature 18S rRNA 1.45808317074872 815.164855957031 1077.62683105469 NOB1 30490 // processing of 20S pre-rRNA // inferred from mutant phenotype /// 30490 // processing of 20S pre-rRNA // inferred from expression pattern /// 42274 // ribosomal small subunit biogenesis // inferred from physical interaction /// 43248 // proteasome assembly // inferred from mutant phenotype /// 43248 // proteasome assembly // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 30684 // preribosome // inferred from direct assay /// 30684 // preribosome // inferred from physical interaction /// 30684 // preribosome // inferred from expression pattern 3723 // RNA binding // inferred from direct assay /// 3723 // RNA binding // inferred from sequence similarity /// 5515 // protein binding // inferred from direct assay /// 5515 // protein binding // inferred from mutant phenotype 1038.27429199219 712.081665039063 918.248046875 1116.97937011719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR056C /GEN=NOB1 /DB_XREF=GI:6324630 /SEG=NC_001147:-430248,431627 /DEF=Essential nuclear protein that interacts with the proteasome; may act as a chaperone to facilitate binding of the 20S proteasome to the 19S regulatory particle during proteasome maturation /NOTE=Nob1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12502737]; go_component: proteasome complex (sensu Eukarya) [goid GO:0000502] [evidence IPI] [pmid 10675611]; go_function: chaperone activity [goid GO:0003754] [evidence IDA,IMP] [pmid 12502737]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP,IPI] [pmid 12502737]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence IMP] [pmid 12502737] --- --- --- --- --- --- S0005582 // NOB1 SGDID:S0005582, Chr XV from 431627-430248, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022621 // cdna:GeneFinder chromosome:SGD1:XV:430248:431627:-1 // ensembl // 11 // --- /// YOR056C // cdna:known chromosome:SGD1:XV:430248:431627:-1 gene:YOR056C // ensembl // 11 // --- --- No cerevisiae_gene 1.07543022238557 -1.45808317074872 1.15619049836089 -1.13071222479118 1.07580374351173 Max fold change below threshold 4 1.45808317074872 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771860_at YAL005C.S1 ATP binding protein involved in protein folding and vacuolar import of proteins; member of heat shock protein 70 (HSP70) family; associated with the chaperonin-containing T-complex; present in the cytoplasm, vacuolar membrane and cell wall /// ATPase involved in protein folding and nuclear localization signal (NLS)-directed nuclear transport; member of heat shock protein 70 (HSP70) family; forms a chaperone complex with Ydj1p; localized to the nucleus, cytoplasm, and cell wall 1.45795745751572 5723.96997070313 4595.70324707031 SSA2 /// SSA1 6457 // protein folding // inferred from mutant phenotype /// 60 // protein-nucleus import, translocation // inferred from direct assay /// 6457 // protein folding // inferred from direct assay /// 6616 // SRP-dependent cotranslational protein-membrane targeting, translocation // inferred from direct assay 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5832 // chaperonin-containing T-complex // inferred from physical interaction /// 9277 // cell wall (sensu Fungi) // inferred from direct assay /// 5634 // nucleus // inferred from direct assay 5524 // ATP binding // inferred from direct assay /// 16887 // ATPase activity // inferred from direct assay /// 51082 // unfolded protein binding // inferred from direct assay 5451.95751953125 7465.337890625 3982.60205078125 3739.44897460938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL005C /GEN=SSA1 /DB_XREF=GI:6319314 /SEG=NC_001133:-139507,141435 /DEF=Stress-seventy subfamily A /NOTE=Ssa1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 8755907]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 10745074]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 7737974]; go_function: chaperone activity [goid GO:0003754] [evidence IDA] [pmid 9789005]; go_function: heat shock protein activity [goid GO:0003773] [evidence IDA] [pmid 8355706]; go_process: SRP-dependent cotranslational membrane targeting, translocation [goid GO:0006616] [evidence IDA] [pmid 8754838]; go_process: protein folding [goid GO:0006457] [evidence IDA] [pmid 8947547]; go_process: protein-nucleus import, translocation [goid GO:0000060] [evidence IDA] [pmid 10347213] --- --- --- --- --- --- S0000004 // SSA1 SGDID:S0000004, Chr I from 141433-139505, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018209 // cdna:GeneFinder chromosome:SGD1:I:139505:141433:-1 // ensembl // 11 // --- /// GENSCAN00000020375 // cdna:Genscan chromosome:SGD1:I:139505:141433:-1 // ensembl // 11 // --- /// YAL005C // cdna:known chromosome:SGD1:I:139505:141433:-1 gene:YAL005C // ensembl // 11 // --- --- No cerevisiae_gene -1.37929024347747 1.36929494844392 -1.12087334811956 -1.36894358261624 -1.45795745751572 Max fold change below threshold 4 1.45795745751572 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773654_at YPR180W.S1 Nuclear protein that acts as a heterodimer with Uba2p to activate Smt3p (SUMO) before its conjugation to proteins (sumoylation), which may play a role in protein targeting; essential for viability 1.45756944803876 864.886749267578 1194.87371826172 AOS1 16925 // protein sumoylation // inferred from direct assay 5634 // nucleus // inferred from direct assay 19948 // SUMO activating enzyme activity // inferred from direct assay /// 19948 // SUMO activating enzyme activity // inferred from physical interaction 1136.14184570313 779.476989746094 950.296508789063 1253.60559082031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR180W /GEN=AOS1 /DB_XREF=GI:6325438 /SEG=NC_001148:+895955,896998 /DEF=Nuclear protein that acts as a heterodimer with Uba2p to activate Smt3p (SUMO) before its conjugation to proteins (sumoylation), which may play a role in protein targeting; essential for viability /NOTE=Aos1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: SUMO activating enzyme activity [goid GO:0019948] [evidence IDA,IPI] [pmid 9312010]; go_process: protein sumoylation [goid GO:0016925] [evidence IDA] [pmid 9312010] --- --- --- --- --- --- S0006384 // AOS1 SGDID:S0006384, Chr XVI from 895957-897000, Verified ORF // sgd // 11 // --- /// GENSCAN00000017323 // cdna:Genscan chromosome:SGD1:XVI:895957:897000:1 // ensembl // 11 // --- /// GENEFINDER00000020790 // cdna:GeneFinder chromosome:SGD1:XVI:895957:897000:1 // ensembl // 11 // --- /// YPR180W // cdna:known chromosome:SGD1:XVI:895957:897000:1 gene:YPR180W // ensembl // 11 // --- --- No cerevisiae_gene -1.12962732134493 -1.45756944803876 1.17216791941443 -1.19556563156365 1.10338827459039 Max fold change below threshold 4 1.45756944803876 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773639_at YDL099W.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.4575018375561 1599.60662841797 1391.70849609375 --- --- 5737 // cytoplasm // inferred from direct assay --- 1355.03796386719 1591.16882324219 1608.04443359375 1428.37902832031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL099W /GEN=ARR4 /DB_XREF=GI:6320104 /SEG=NC_001136:+283419,284444 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ydl099wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002257 // YDL099W SGDID:S0002257, Chr IV from 283419-284444, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023911 // cdna:GeneFinder chromosome:SGD1:IV:283419:284444:1 // ensembl // 11 // --- /// GENSCAN00000025026 // cdna:Genscan chromosome:SGD1:IV:283452:284444:1 // ensembl // 11 // --- /// YDL099W // cdna:known chromosome:SGD1:IV:283419:284444:1 gene:YDL099W // ensembl // 11 // --- --- No cerevisiae_gene -1.4575018375561 1.17426143449228 1.02373962330067 1.18671541054429 1.05412473038306 Max fold change below threshold 4 1.4575018375561 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769866_at YLR312W-A.S1 Mitochondrial ribosomal protein of the large subunit 1.45727386658874 638.354400634766 981.718994140625 MRPL15 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement /// 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // traceable author statement 927.385375976563 640.325073242188 636.383728027344 1036.05261230469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR312W-A /GEN=MRPL15 /DB_XREF=GI:6323344 /SEG=NC_001144:+759385,760243 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl15p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0004304 // MRPL15 SGDID:S0004304, Chr XII from 759385-759412,759567-760243, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000018062 // cdna:Genscan chromosome:SGD1:XII:759482:760243:1 // ensembl // 11 // --- /// YLR312W-A // cdna:known chromosome:SGD1:XII:759385:760243:1 gene:YLR312W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.25549137497909 -1.44830401733434 1.08240665797831 -1.45727386658874 1.11717592183691 Max fold change below threshold 4 1.45727386658874 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777009_at YBR274W.S1 checkpoint kinase 1; homolog of the S. pombe and mammalian Chk1 checkpoint kinases; Protein kinase Chk1 1.45720933182605 511.382431030273 439.282989501953 CHK1 77 // DNA damage checkpoint // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from sequence similarity 5634 // nucleus // inferred from physical interaction 4672 // protein kinase activity // inferred from mutant phenotype /// 4672 // protein kinase activity // inferred from sequence similarity 378.667022705078 470.967742919922 551.797119140625 499.898956298828 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR274W /GEN=CHK1 /DB_XREF=GI:6319751 /SEG=NC_001134:+749551,751134 /DEF=checkpoint kinase 1; homolog of the S. pombe and mammalian Chk1 checkpoint kinases /NOTE=Chk1p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 11390356]; go_function: protein kinase activity [goid GO:0004672] [evidence IMP,ISS] [pmid 10660074]; go_process: DNA damage response, signal transduction resulting in cell cycle arrest [goid GO:0000077] [evidence IMP] [pmid 10660074]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IMP,ISS] [pmid 10660074] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 5.0E-56 /// hanks // 1.9.6 // AGC group; AGC Other; SPK1 // 2.0E-62 --- --- S0000478 // CHK1 SGDID:S0000478, Chr II from 749589-751172, Verified ORF // sgd // 11 // --- /// GENSCAN00000021358 // cdna:Genscan chromosome:SGD1:II:749589:751172:1 // ensembl // 11 // --- /// GENEFINDER00000022189 // cdna:GeneFinder chromosome:SGD1:II:749694:751172:1 // ensembl // 11 // --- /// YBR274W // cdna:known chromosome:SGD1:II:749589:751172:1 gene:YBR274W // ensembl // 11 // --- --- No cerevisiae_gene 1.27793667409699 1.24375167279019 1.3149848716502 1.45720933182605 1.32015445318609 Max fold change below threshold 4 1.45720933182605 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772696_at YDR086C.S1 Subunit of the Sec61p translocation complex (Sec61p-Sss1p-Sbh1p) that forms a channel for passage of secretory proteins through the endoplasmic reticulum membrane, and of the Ssh1p complex (Ssh1p-Sbh2p-Sss1p); interacts with Ost4p and Wbp1p 1.45693287229072 1293.96783447266 1801.73559570313 SSS1 6616 // SRP-dependent cotranslational protein-membrane targeting, translocation // traceable author statement /// 6620 // posttranslational protein-membrane targeting // traceable author statement /// 9306 // protein secretion // inferred from mutant phenotype /// 31204 // posttranslational protein membrane targeting, translocation // traceable author statement 5784 // translocon complex // traceable author statement /// 5784 // translocon complex // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // inferred from direct assay /// 31206 // Sec complex-associated translocon complex // traceable author statement 8565 // protein transporter activity // traceable author statement 1761.13928222656 1379.13647460938 1208.79919433594 1842.33190917969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR086C /GEN=SSS1 /DB_XREF=GI:6320291 /SEG=NC_001136:-616922,617164 /DEF=Subunit of the Sec61p ER translocation complex (Sec61p-Sss1p-Sbh1p), involved in transfer of secretory precursors through the endoplasmic reticulum membrane /NOTE=Sss1p; go_component: translocon [goid GO:0005784] [evidence TAS] [pmid 10921929]; go_function: protein transporter activity [goid GO:0008565] [evidence TAS] [pmid 10921929]; go_process: cotranslational membrane targeting [goid GO:0006613] [evidence TAS] [pmid 10921929] --- --- --- --- --- S0002493 // span:53-75 // numtm:1 S0002493 // SSS1 SGDID:S0002493, Chr IV from 617165-616923, reverse complement, Verified ORF // sgd // 11 // --- /// YDR086C // cdna:known chromosome:SGD1:IV:616923:617165:-1 gene:YDR086C // ensembl // 11 // --- --- No cerevisiae_gene 1.09185754211145 -1.27698695136418 -1.30433473269382 -1.45693287229072 1.04610233146948 Max fold change below threshold 4 1.45693287229072 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779243_at YDR163W.S1 Non-essential protein involved in pre-mRNA splicing, component of a complex containing Cef1p; has similarity to S. pombe Cwf15p 1.45596519148174 391.020477294922 337.931198120117 CWC15 398 // nuclear mRNA splicing, via spliceosome // inferred from genetic interaction 5681 // spliceosome complex // inferred from physical interaction --- 321.85009765625 313.438415527344 468.6025390625 354.012298583984 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR163W /GEN=CWC15 /DB_XREF=GI:6320367 /SEG=NC_001136:+781417,781944 /DEF=Non-essential protein involved in pre-mRNA splicing, component of a complex containing Cef1p; has similarity to S. pombe Cwf15p /NOTE=Cwc15p; go_component: spliceosome complex [goid GO:0005681] [evidence IPI] [pmid 11884590]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IGI] [pmid 11884590] --- --- --- --- --- --- S0002570 // CWC15 SGDID:S0002570, Chr IV from 781418-781945, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023519 // cdna:GeneFinder chromosome:SGD1:IV:781418:781945:1 // ensembl // 10 // --- /// GENSCAN00000025218 // cdna:Genscan chromosome:SGD1:IV:781418:781945:1 // ensembl // 10 // --- /// YDR163W // cdna:known chromosome:SGD1:IV:781418:781945:1 gene:YDR163W // ensembl // 10 // --- --- No cerevisiae_gene 1.00009007826758 -1.02683679380766 1.32751974515625 1.45596519148174 1.09992913210822 Max fold change below threshold 4 1.45596519148174 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777874_at YJR085C.S1 Hypothetical protein 1.45590454971245 4796.51733398438 4379.31701660156 --- --- 5739 // mitochondrion // inferred from direct assay --- 4762.09814453125 5117.060546875 4475.97412109375 3996.53588867188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR085C /GEN=CSN12 /DB_XREF=GI:6322544 /SEG=NC_001142:-585034,585351 /DEF=Hypothetical ORF /NOTE=Yjr085cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003845 // span:24-46,53-70,80-97 // numtm:3 S0003845 // YJR085C SGDID:S0003845, Chr X from 585351-585034, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YJR085C // cdna:known chromosome:SGD1:X:585034:585351:-1 gene:YJR085C // ensembl // 11 // --- --- No cerevisiae_gene -1.45590454971245 1.07453907743405 -1.07983247986271 -1.06392441414911 -1.19155645718817 Max fold change below threshold 4 1.45590454971245 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777088_at YBR272C.S1 Protein of unknown function, involved in DNA mismatch repair during slow growth; has weak similarity to Msh1p 1.45575695809719 245.019729614258 216.122329711914 HSM3 6298 // mismatch repair // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 213.204498291016 195.298797607422 294.740661621094 219.040161132813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR272C /GEN=HSM3 /DB_XREF=GI:6319749 /SEG=NC_001134:-746318,747760 /DEF=Protein of unknown function, involved in DNA mismatch repair during slow growth; has weak similarity to Msh1p /NOTE=Hsm3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mismatch repair [goid GO:0006298] [evidence IMP] [pmid 10681183] --- --- --- --- --- --- S0000476 // HSM3 SGDID:S0000476, Chr II from 747798-746356, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021356 // cdna:Genscan chromosome:SGD1:II:746356:747798:-1 // ensembl // 11 // --- /// GENEFINDER00000022190 // cdna:GeneFinder chromosome:SGD1:II:746356:747798:-1 // ensembl // 11 // --- /// YBR272C // cdna:known chromosome:SGD1:II:746356:747798:-1 gene:YBR272C // ensembl // 11 // --- --- No cerevisiae_gene 1.18019469575032 -1.09168361967894 1.45575695809719 1.38243172158021 1.02737119942859 Max fold change below threshold 4 1.45575695809719 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778503_at YPR074C.S1 Transketolase, similar to Tkl2p; catalyzes conversion of xylulose-5-phosphate and ribose-5-phosphate to sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate in the pentose phosphate pathway; needed for synthesis of aromatic amino acids 1.45566725195262 2065.80645751953 2710.96350097656 TKL1 6098 // pentose-phosphate shunt // traceable author statement /// 6098 // pentose-phosphate shunt // inferred from mutant phenotype 5737 // cytoplasm // inferred from sequence similarity 4802 // transketolase activity // inferred from sequence similarity /// 4802 // transketolase activity // inferred from mutant phenotype 2773.50073242188 2045.52722167969 2086.08569335938 2648.42626953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR074C /GEN=TKL1 /DB_XREF=GI:6325331 /SEG=NC_001148:-692791,694833 /DEF=Transketolase 1 /NOTE=Tkl1p; go_component: cytoplasm [goid GO:0005737] [evidence ISS] [pmid 2843500]; go_function: transketolase activity [goid GO:0004802] [evidence IMP,ISS] [pmid 8226984]; go_process: pentose-phosphate shunt [goid GO:0006098] [evidence IMP] [pmid 8299150]; go_process: pentose-phosphate shunt [goid GO:0006098] [evidence TAS] [pmid 8534086] --- --- --- --- --- --- S0006278 // TKL1 SGDID:S0006278, Chr XVI from 694835-692793, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017241 // cdna:Genscan chromosome:SGD1:XVI:692793:694835:-1 // ensembl // 11 // --- /// GENEFINDER00000021007 // cdna:GeneFinder chromosome:SGD1:XVI:692793:694835:-1 // ensembl // 11 // --- /// YPR074C // cdna:known chromosome:SGD1:XVI:692793:694835:-1 gene:YPR074C // ensembl // 11 // --- --- No cerevisiae_gene 1.45566725195262 -1.35588551598175 -1.01766914646201 -1.32952387394763 -1.04722595615726 Max fold change below threshold 4 1.45566725195262 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779594_at YPL120W.S1 Protein that forms a membrane-associated complex with Apg14p that is essential for autophagy; involved in a retrieval step of the carboxypeptidase Y receptor, Vps10p, to the late Golgi from the endosome; involved in vacuolar protein sorting 1.45558430088346 1013.28277587891 817.200897216797 VPS30 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6914 // autophagy // inferred from mutant phenotype 5624 // membrane fraction // inferred from direct assay --- 776.210266113281 1030.54638671875 996.019165039063 858.191528320313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL120W /GEN=VPS30 /DB_XREF=GI:6325137 /SEG=NC_001148:+322070,323743 /DEF=Required for sorting and delivery of soluble hydrolases to the vacuole. /NOTE=Vps30p; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 8754838]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: autophagy [goid GO:0006914] [evidence IMP] [pmid 9712845]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 9712845] --- --- --- --- scop // a.4.5.SCF ubiquitin ligase complex WHB domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; SCF ubiquitin ligase complex WHB domain // 1.60000002384186 --- S0006041 // VPS30 SGDID:S0006041, Chr XVI from 322070-323743, Verified ORF // sgd // 11 // --- /// GENSCAN00000017098 // cdna:Genscan chromosome:SGD1:XVI:322070:323743:1 // ensembl // 11 // --- /// GENEFINDER00000020889 // cdna:GeneFinder chromosome:SGD1:XVI:322070:323743:1 // ensembl // 11 // --- /// YPL120W // cdna:known chromosome:SGD1:XVI:322070:323743:1 gene:YPL120W // ensembl // 11 // --- --- No cerevisiae_gene -1.40213083180257 1.32766394842857 1.45558430088346 1.28318215890964 1.10561733822143 Max fold change below threshold 4 1.45558430088346 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778446_at YPL088W.S1 Putative aryl alcohol dehydrogenase; transcription is activated by paralogous transcription factors Yrm1p and Yrr1p along with genes involved in multidrug resistance 1.4550823484346 1269.44342041016 1055.52545166016 --- 6081 // aldehyde metabolism // inferred from sequence similarity --- 18456 // aryl-alcohol dehydrogenase activity // inferred from sequence similarity 1063.091796875 1143.83666992188 1395.05017089844 1047.95910644531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL088W /GEN=RLM1 /DB_XREF=GI:6325169 /SEG=NC_001148:+381960,382988 /DEF=Putative aryl alcohol dehydrogenase; transcription is activated by paralogous transcription factors Yrm1p and Yrr1p along with genes involved in multidrug resistance /NOTE=Ypl088wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: aryl-alcohol dehydrogenase activity [goid GO:0018456] [evidence ISS] [pmid 10572264]; go_process: aldehyde metabolism [goid GO:0006081] [evidence ISS] [pmid 10572264] --- --- --- --- --- --- S0006009 // YPL088W SGDID:S0006009, Chr XVI from 381962-382990, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017122 // cdna:Genscan chromosome:SGD1:XVI:381962:382990:1 // ensembl // 11 // --- /// GENEFINDER00000020843 // cdna:GeneFinder chromosome:SGD1:XVI:381962:382990:1 // ensembl // 11 // --- /// YPL088W // cdna:known chromosome:SGD1:XVI:381962:382990:1 gene:YPL088W // ensembl // 11 // --- --- No cerevisiae_gene 1.4550823484346 1.07595287000072 -1.3481657373387 1.31225748801678 -1.01444015356765 Max fold change below threshold 4 1.4550823484346 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779176_at YDR373W.S1 N-myristoylated calcium-binding protein that may have a role in intracellular signaling through its regulation of the phosphatidylinositol 4-kinase Pik1p; member of the recoverin/frequenin branch of the EF-hand superfamily 1.45499252266591 1340.2880859375 1665.46282958984 FRQ1 9966 // regulation of signal transduction // inferred from mutant phenotype /// 9966 // regulation of signal transduction // inferred from physical interaction 16020 // membrane // inferred from sequence similarity 5509 // calcium ion binding // inferred from sequence similarity /// 8047 // enzyme activator activity // inferred from direct assay 1639.96594238281 1444.62487792969 1235.95129394531 1690.95971679688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR373W /GEN=FRQ1 /DB_XREF=GI:6320581 /SEG=NC_001136:+1222747,1223319 /DEF=N-myristoylated calcium-binding protein that may have a role in intracellular signaling through its regulation of the phosphatidylinositol 4-kinase Pik1p; member of the recoverin/frequenin branch of the EF-hand superfamily /NOTE=Frq1p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 10559922]; go_function: calcium ion binding [goid GO:0005509] [evidence ISS] [pmid 10559922]; go_function: enzyme activator activity [goid GO:0008047] [evidence IDA] [pmid 10559922]; go_process: regulation of signal transduction [goid GO:0009966] [evidence IMP,IPI] [pmid 12477731] --- --- --- --- --- --- S0002781 // FRQ1 SGDID:S0002781, Chr IV from 1222749-1223321, Verified ORF // sgd // 11 // --- /// YDR373W // cdna:known chromosome:SGD1:IV:1222749:1223321:1 gene:YDR373W // ensembl // 11 // --- --- No cerevisiae_gene -1.14635335320234 -1.13521923056806 1.45499252266591 -1.32688557422666 1.03109441061927 Max fold change below threshold 4 1.45499252266591 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769767_at YIL132C.S1 Protein required for accurate chromosome segregation during meiosis 1.45435514296314 72.7335815429688 114.268547058105 CSM2 45021 // error-free DNA repair // inferred from mutant phenotype /// 45132 // meiotic chromosome segregation // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 98.0136413574219 78.0739669799805 67.393196105957 130.523452758789 0.000244141003349796 0.000244141003349796 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL132C /GEN=CSM2 /DB_XREF=GI:6322059 /SEG=NC_001141:-99860,100501 /DEF=Protein required for accurate chromosome segregation during meiosis /NOTE=Csm2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiotic chromosome segregation [goid GO:0045132] [evidence IMP] [pmid 11470404] --- --- --- --- --- --- S0001394 // CSM2 SGDID:S0001394, Chr IX from 100501-99860, reverse complement, Verified ORF // sgd // 11 // --- /// YIL132C // cdna:known chromosome:SGD1:IX:99860:100501:-1 gene:YIL132C // ensembl // 11 // --- --- No cerevisiae_gene 1.30065454208053 -1.2553946616105 1.12567444580163 -1.45435514296314 1.33168659944808 Max fold change below threshold 4 1.45435514296314 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769691_at YLR089C.S1 Putative alanine transaminase (glutamic pyruvic transaminase) 1.45420408339283 1871.71990966797 1395.63153076172 --- --- 5739 // mitochondrion // inferred from direct assay 8483 // transaminase activity // inferred from sequence similarity 1381.36340332031 1734.65551757813 2008.78430175781 1409.89965820313 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR089C /GEN=GAA1 /DB_XREF=GI:6323118 /SEG=NC_001144:-318238,320016 /DEF=putative alanine transaminase (glutamyc pyruvic transaminase) /NOTE=Ylr089cp --- --- --- ec // 1A11_CUCMA // (P23599) 1-aminocyclopropane-1-carboxylate synthase CMW33 (EC 4.4.1.14) (ACC synthase) (S-adenosyl-L-methionine methylthioadenosine-lyase) // 1.0E-116 --- --- S0004079 // ALT1 SGDID:S0004079, Chr XII from 320016-318238, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017888 // cdna:Genscan chromosome:SGD1:XII:318238:319914:-1 // ensembl // 11 // --- /// GENEFINDER00000024824 // cdna:GeneFinder chromosome:SGD1:XII:318238:319914:-1 // ensembl // 11 // --- /// YLR089C // cdna:known chromosome:SGD1:XII:318238:320016:-1 gene:YLR089C // ensembl // 11 // --- --- No cerevisiae_gene 1.28767142898424 1.25575609822051 1.22500653712944 1.45420408339283 1.02065803597679 Max fold change below threshold 4 1.45420408339283 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775401_at YIL024C.S1 Hypothetical protein 1.45378548373575 154.496337890625 252.672660827637 --- --- --- --- 223.067184448242 153.438858032227 155.553817749023 282.278137207031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL024C /GEN=IRR1 /DB_XREF=GI:6322165 /SEG=NC_001141:-308600,309169 /DEF=Hypothetical ORF /NOTE=Yil024cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001286 // YIL024C SGDID:S0001286, Chr IX from 309169-308600, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016456 // cdna:Genscan chromosome:SGD1:IX:308600:309169:-1 // ensembl // 11 // --- /// GENEFINDER00000019082 // cdna:GeneFinder chromosome:SGD1:IX:308600:309169:-1 // ensembl // 11 // --- /// YIL024C // cdna:known chromosome:SGD1:IX:308600:309169:-1 gene:YIL024C // ensembl // 11 // --- --- No cerevisiae_gene -1.15070677611197 -1.45378548373575 -1.19428207492519 -1.43401934890565 1.26543999694643 Max fold change below threshold 4 1.45378548373575 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776777_at YMR276W.S1 Nuclear-enriched ubiquitin-like polyubiquitin-binding protein, required for spindle pole body (SPB) duplication and for transit through the G2/M phase of the cell cycle, involved in proteolysis, interacts with the proteasome 1.45360421647755 3923.69714355469 3064.86694335938 DSK2 7103 // spindle pole body duplication in nuclear envelope // traceable author statement /// 30433 // ER-associated protein catabolism // inferred from mutant phenotype 5634 // nucleus // traceable author statement 30674 // protein binding, bridging // inferred from mutant phenotype /// 30674 // protein binding, bridging // inferred from physical interaction 3089.56372070313 3662.55249023438 4184.841796875 3040.17016601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR276W /GEN=DSK2 /DB_XREF=GI:6323932 /SEG=NC_001145:+818826,819947 /DEF=Nuclear-enriched ubiquitin-like polyubiquitin-binding protein, required for spindle pole body (SPB) duplication and for transit through the G2/M phase of the cell cycle, involved in proteolysis, interacts with the proteasome /NOTE=Dsk2p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 9153752]; go_function: protein binding, bridging [goid GO:0030674] [evidence IMP,IPI] [pmid 11805328]; go_process: spindle pole body duplication (sensu Saccharomyces) [goid GO:0007103] [evidence TAS] [pmid 9153752] --- --- --- --- --- --- S0004889 // DSK2 SGDID:S0004889, Chr XIII from 818826-819947, Verified ORF // sgd // 11 // --- /// GENSCAN00000018945 // cdna:Genscan chromosome:SGD1:XIII:818826:819947:1 // ensembl // 11 // --- /// GENEFINDER00000021888 // cdna:GeneFinder chromosome:SGD1:XIII:818826:819947:1 // ensembl // 11 // --- /// YMR276W // cdna:known chromosome:SGD1:XIII:818826:819947:1 gene:YMR276W // ensembl // 11 // --- --- No cerevisiae_gene -1.45360421647755 1.18545944389872 -1.02385533787578 1.35450897770207 -1.01624697039647 Max fold change below threshold 4 1.45360421647755 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770948_at YLR075W.S1 Protein component of the large (60S) ribosomal subunit, responsible for joining the 40S and 60S subunits; regulates translation initiation; has similarity to rat L10 ribosomal protein and to members of the QM gene family 1.45359474844441 6584.09912109375 6672.97680664063 RPL10 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 7610.40673828125 7932.62158203125 5235.57666015625 5735.546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR075W /GEN=RPL10 /DB_XREF=GI:6323104 /SEG=NC_001144:+282928,283593 /DEF=Protein component of the large (60S) ribosomal subunit, responsible for joining the 40S and 60S subunits; regulates translation initiation; has similarity to rat L10 ribosomal protein and to members of the QM gene family /NOTE=Rpl10p; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 9580698] --- --- --- --- --- --- S0004065 // RPL10 SGDID:S0004065, Chr XII from 282928-283593, Verified ORF // sgd // 11 // --- /// GENSCAN00000017876 // cdna:Genscan chromosome:SGD1:XII:282928:283593:1 // ensembl // 11 // --- /// GENEFINDER00000024871 // cdna:GeneFinder chromosome:SGD1:XII:282928:283593:1 // ensembl // 11 // --- /// YLR075W // cdna:known chromosome:SGD1:XII:282928:283593:1 gene:YLR075W // ensembl // 11 // --- YLR076C // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene -1.222770143474 1.04233871523965 -1.3105634465433 -1.45359474844441 -1.32688423687257 Max fold change below threshold 4 1.45359474844441 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773476_at YMR185W.S1 Protein required for cell viability 1.45319230383653 545.35221862793 587.177459716797 --- --- --- --- 536.15576171875 632.404602050781 458.299835205078 638.199157714844 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR185W /GEN=SSO2 /DB_XREF=GI:6323839 /SEG=NC_001145:+629024,631969 /DEF=Protein required for cell viability /NOTE=Ymr185wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004797 // YMR185W SGDID:S0004797, Chr XIII from 629024-631969, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018870 // cdna:Genscan chromosome:SGD1:XIII:629024:631969:1 // ensembl // 11 // --- /// GENEFINDER00000022036 // cdna:GeneFinder chromosome:SGD1:XIII:629408:631969:1 // ensembl // 11 // --- /// YMR185W // cdna:known chromosome:SGD1:XIII:629024:631969:1 gene:YMR185W // ensembl // 11 // --- --- No cerevisiae_gene 1.18677445045613 1.17951656440936 -1.45319230383653 -1.16987989201182 1.19032416189835 Max fold change below threshold 4 1.45319230383653 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777321_at YDR529C.S1 Subunit 7 of the ubiquinol cytochrome-c reductase complex, which is a component of the mitochondrial inner membrane electron transport chain; oriented facing the mitochondrial matrix; N-terminus appears to play a role in complex assembly 1.45306460541206 6655.13037109375 5269.92333984375 QCR7 6122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from mutant phenotype /// 17062 // cytochrome bc(1) complex assembly // inferred from mutant phenotype 5750 // respiratory chain complex III (sensu Eukaryota) // inferred from direct assay 8121 // ubiquinol-cytochrome-c reductase activity // inferred from mutant phenotype 6084.6083984375 8841.3291015625 4468.931640625 4455.23828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR529C /GEN=QCR7 /DB_XREF=GI:6320738 /SEG=NC_001136:-1496153,1496536 /DEF=ubiquinol-cytochrome c oxidoreductase subunit 7 (14 kDa) /NOTE=Qcr7p; go_component: respiratory chain complex III (sensu Eukarya) [goid GO:0005750] [evidence IDA] [pmid 10873857]; go_function: ubiquinol-cytochrome-c reductase activity [goid GO:0008121] [evidence IMP] [pmid 2540976]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 2540976]; go_process: cytochrome bc(1) complex biogenesis [goid GO:0017062] [evidence IMP] [pmid 11556808]; go_process: mitochondrial electron transport, ubiquinol to cytochrome c [goid GO:0006122] [evidence IMP] [pmid 2540976] --- --- --- --- --- --- S0002937 // QCR7 SGDID:S0002937, Chr IV from 1496538-1496155, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023602 // cdna:GeneFinder chromosome:SGD1:IV:1496155:1496538:-1 // ensembl // 11 // --- /// GENSCAN00000025511 // cdna:Genscan chromosome:SGD1:IV:1496155:1496538:-1 // ensembl // 11 // --- /// YDR529C // cdna:known chromosome:SGD1:IV:1496155:1496538:-1 gene:YDR529C // ensembl // 11 // --- --- No cerevisiae_gene -1.35099617618392 1.45306460541206 -1.11820031643798 -1.36153534843208 -1.36572008371466 Max fold change below threshold 4 1.45306460541206 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775890_at YMR090W.S1 Hypothetical protein 1.45303742800887 5067.17846679688 5297.60083007813 --- --- 5737 // cytoplasm // inferred from direct assay --- 6008.62548828125 5848.31640625 4286.04052734375 4586.576171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR090W /GEN=YTA12 /DB_XREF=GI:6323737 /SEG=NC_001145:+449244,449927 /DEF=Hypothetical ORF /NOTE=Ymr090wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004696 // YMR090W SGDID:S0004696, Chr XIII from 449244-449927, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018786 // cdna:Genscan chromosome:SGD1:XIII:449244:449927:1 // ensembl // 11 // --- /// YMR090W // cdna:known chromosome:SGD1:XIII:449244:449927:1 gene:YMR090W // ensembl // 11 // --- GENEFINDER00000021866 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene -1.45303742800887 -1.02741115064498 -1.12987622441021 -1.40190589658401 -1.3100459390877 Max fold change below threshold 4 1.45303742800887 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774737_at YGR120C.S1 Essential component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tethering complex that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments 1.45295013244787 398.391983032227 611.988800048828 COG2 301 // retrograde transport, vesicle recycling within Golgi // inferred from mutant phenotype /// 301 // retrograde transport, vesicle recycling within Golgi // traceable author statement /// 6888 // ER to Golgi transport // inferred from genetic interaction /// 6891 // intra-Golgi transport // inferred from physical interaction /// 6891 // intra-Golgi transport // inferred from genetic interaction 300 // peripheral to membrane of membrane fraction // inferred from direct assay /// 5625 // soluble fraction // inferred from direct assay /// 17119 // Golgi transport complex // inferred from physical interaction 5515 // protein binding // inferred from physical interaction 574.862548828125 401.132019042969 395.651947021484 649.115051269531 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR120C /GEN=COG2 /DB_XREF=GI:37362655 /SEG=NC_001139:-730036,730824 /DEF=Conserved Oligomeric Golgi complex 2 Secretion deficient /NOTE=Cog2p; go_component: Golgi transport complex [goid GO:0017119] [evidence IPI] [pmid 11703943]; go_component: peripheral to membrane of membrane fraction [goid GO:0000300] [evidence IDA] [pmid 10512869]; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 10512869]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12011112]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IGI] [pmid 10512869]; go_process: intra-Golgi transport [goid GO:0006891] [evidence IGI,IPI] [pmid 11703943]; go_process: retrograde transport, vesicle recycling within Golgi [goid GO:0000301] [evidence IMP,TAS] [pmid 11703943] --- --- --- --- --- --- S0003352 // COG2 SGDID:S0003352, Chr VII from 730826-730038, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019433 // cdna:Genscan chromosome:SGD1:VII:730038:730826:-1 // ensembl // 11 // --- /// YGR120C // cdna:known chromosome:SGD1:VII:730038:730826:-1 gene:YGR120C // ensembl // 11 // --- --- No cerevisiae_gene -1.05600231414521 -1.43310062906384 -1.08269215316869 -1.45295013244787 1.1291656633273 Max fold change below threshold 4 1.45295013244787 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779094_at YGL025C.S1 Subunit of the Mediator global transcriptional cofactor complex, which is part of the RNA polymerase II holoenzyme and plays an essential role in basal and activated transcription; direct target of the Cyc8p-Tup1p transcriptional corepressor 1.45287792558443 260.82820892334 326.061386108398 PGD1 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from direct assay 317.625305175781 218.618026733398 303.038391113281 334.497467041016 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL025C /GEN=PGD1 /DB_XREF=GI:37362652 /SEG=NC_001139:-448767,449960 /DEF=Probable transcription factor, polyglutamine domain protein /NOTE=Pgd1p; go_component: mediator complex [goid GO:0000119] [evidence IDA] [pmid 9420330]; go_function: RNA polymerase II transcription mediator activity [goid GO:0016455] [evidence IDA] [pmid 9420330]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IDA] [pmid 9420330] --- --- --- --- --- --- S0002993 // PGD1 SGDID:S0002993, Chr VII from 449962-448769, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019321 // cdna:Genscan chromosome:SGD1:VII:448769:450064:-1 // ensembl // 11 // --- /// GENEFINDER00000021413 // cdna:GeneFinder chromosome:SGD1:VII:448769:450064:-1 // ensembl // 11 // --- /// YGL025C // cdna:known chromosome:SGD1:VII:448769:449962:-1 gene:YGL025C // ensembl // 11 // --- --- No cerevisiae_gene -1.29547791471285 -1.45287792558443 1.2728391365597 -1.04813553163648 1.05311970296541 Max fold change below threshold 4 1.45287792558443 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772907_at YNR034W.S1 Protein with a possible role in tRNA export; shows similarity to glucose-6-phosphate dehydrogenase non-catalytic domains but does not exhibit this enzymatic activity; homologous to Sol2p, Sol3p, and Sol4p 1.452860763165 859.918121337891 824.262451171875 SOL1 6409 // tRNA-nucleus export // inferred from genetic interaction /// 6409 // tRNA-nucleus export // inferred from mutant phenotype /// 8033 // tRNA processing // inferred from genetic interaction /// 8033 // tRNA processing // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 17057 // 6-phosphogluconolactonase activity // inferred from direct assay 790.034362792969 757.258056640625 962.578186035156 858.490539550781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR034W /GEN=SOL1 /DB_XREF=GI:6324362 /SEG=NC_001146:+690320,691285 /DEF=Multicopy Suppressor Of los1 /NOTE=Sol1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: 6-phosphogluconolactonase activity [goid GO:0017057] [evidence ISS] [pmid 10518023]; go_process: tRNA processing [goid GO:0008033] [evidence IGI,IMP] [pmid 8725220] --- --- --- ec // 6PGL_DROME // (Q9VZ64) Potential 6-phosphogluconolactonase (EC 3.1.1.31) (6PGL) // 4.0E-95 --- --- S0005317 // SOL1 SGDID:S0005317, Chr XIV from 690321-691286, Verified ORF // sgd // 11 // --- /// GENSCAN00000020064 // cdna:Genscan chromosome:SGD1:XIV:690321:691286:1 // ensembl // 11 // --- /// GENEFINDER00000020591 // cdna:GeneFinder chromosome:SGD1:XIV:690321:691286:1 // ensembl // 11 // --- /// YNR034W // cdna:known chromosome:SGD1:XIV:690321:691286:1 gene:YNR034W // ensembl // 11 // --- --- No cerevisiae_gene -1.452860763165 -1.0432828754543 -1.06575519793408 1.21840040303083 1.08664961928466 Max fold change below threshold 4 1.452860763165 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771310_at YMR241W.S1 Mitochondrial DNA-binding protein, component of the mitochondrial nucleoid structure, involved in mtDNA replication and segregation of mitochondrial genomes; member of the mitochondrial carrier protein family 1.45220052438542 956.940734863281 1145.55438232422 YHM2 2 // mitochondrial genome maintenance // inferred from genetic interaction /// 2 // mitochondrial genome maintenance // inferred from mutant phenotype /// 6842 // tricarboxylic acid transport // inferred from direct assay 5743 // mitochondrial inner membrane // inferred from sequence similarity /// 42645 // mitochondrial nucleoid // inferred from direct assay 3677 // DNA binding // inferred from direct assay /// 5371 // tricarboxylate carrier activity // inferred from direct assay 1171.47924804688 812.303344726563 1101.578125 1119.62951660156 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR241W /GEN=YHM2 /DB_XREF=GI:6323897 /SEG=NC_001145:+751960,752904 /DEF=Yeast suppressor gene of HM mutant (abf2) /NOTE=Yhm2p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence ISS] [pmid 9559855]; go_function: tricarboxylate carrier activity [goid GO:0005371] [evidence IDA] [pmid 9559855]; go_process: tricarboxylic acid transport [goid GO:0006842] [evidence IDA] [pmid 9559855] --- --- --- --- --- --- S0004854 // YHM2 SGDID:S0004854, Chr XIII from 751960-752904, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021969 // cdna:GeneFinder chromosome:SGD1:XIII:751960:752904:1 // ensembl // 11 // --- /// GENSCAN00000018918 // cdna:Genscan chromosome:SGD1:XIII:752101:752904:1 // ensembl // 11 // --- /// YMR241W // cdna:known chromosome:SGD1:XIII:751960:752904:1 gene:YMR241W // ensembl // 11 // --- --- No cerevisiae_gene 1.45220052438542 -1.44216967177603 -1.38986440768299 -1.06345543857534 -1.0463097218111 Max fold change below threshold 4 1.45220052438542 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775933_at YLR333C.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps25Ap and has similarity to rat S25 ribosomal protein 1.45201897410709 3164.62268066406 3470.41418457031 RPS25B 6412 // protein biosynthesis // traceable author statement 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 3747.24975585938 3748.52856445313 2580.716796875 3193.57861328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR333C /GEN=RPS25B /DB_XREF=GI:6323365 /SEG=NC_001144:-795573,795899 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps25Ap and has similarity to rat S25 ribosomal protein /NOTE=Rps25bp; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004325 // RPS25B SGDID:S0004325, Chr XII from 795899-795573, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018074 // cdna:Genscan chromosome:SGD1:XII:795573:795899:-1 // ensembl // 11 // --- /// GENEFINDER00000024555 // cdna:GeneFinder chromosome:SGD1:XII:795573:795899:-1 // ensembl // 11 // --- /// YLR333C // cdna:known chromosome:SGD1:XII:795573:795899:-1 gene:YLR333C // ensembl // 11 // --- --- No cerevisiae_gene -1.12063166780601 1.00034126590888 -1.17341229201369 -1.45201897410709 -1.17337013101088 Max fold change below threshold 4 1.45201897410709 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779830_at YBL057C.S1 One of two (see also PTH1) mitochondrially-localized peptidyl-tRNA hydrolases; dispensable for cell growth 1.45195351612753 872.425018310547 1200.20288085938 PTH2 6412 // protein biosynthesis // inferred from curator 5737 // cytoplasm // inferred from curator /// 5739 // mitochondrion // inferred from direct assay 4045 // aminoacyl-tRNA hydrolase activity // inferred from genetic interaction /// 4045 // aminoacyl-tRNA hydrolase activity // inferred from direct assay /// 4045 // aminoacyl-tRNA hydrolase activity // inferred from sequence similarity 1152.26416015625 793.595764160156 951.254272460938 1248.1416015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL057C /GEN=PTH2 /DB_XREF=GI:6319414 /SEG=NC_001134:-112765,113409 /DEF=peptidyl-tRNA hydrolase /NOTE=Pth2p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 12475929]; go_function: aminoacyl-tRNA hydrolase activity [goid GO:0004045] [evidence IGI,ISS] [pmid 12475929]; go_function: aminoacyl-tRNA hydrolase activity [goid GO:0004045] [evidence IDA] [pmid 12799450]; go_process: protein biosynthesis [goid GO:0006412] [evidence IC] [pmid 12475929] --- --- --- --- --- S0000153 // span:12-34 // numtm:1 S0000153 // PTH2 SGDID:S0000153, Chr II from 113447-112803, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021093 // cdna:Genscan chromosome:SGD1:II:112803:113420:-1 // ensembl // 11 // --- /// GENEFINDER00000022230 // cdna:GeneFinder chromosome:SGD1:II:112803:113420:-1 // ensembl // 11 // --- /// YBL057C // cdna:known chromosome:SGD1:II:112803:113447:-1 gene:YBL057C // ensembl // 11 // --- --- No cerevisiae_gene 1.08049729705908 -1.45195351612753 1.14354550759226 -1.21131036518269 1.08320786562801 Max fold change below threshold 4 1.45195351612753 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771762_at YMR187C.S1 Hypothetical protein 1.45177898860509 240.687423706055 331.039352416992 --- --- --- --- 333.08740234375 251.940887451172 229.433959960938 328.991302490234 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR187C /GEN=HSC82 /DB_XREF=GI:6323841 /SEG=NC_001145:-634688,635983 /DEF=Hypothetical ORF /NOTE=Ymr187cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004799 // span:238-260,349-371,386-405 // numtm:3 S0004799 // YMR187C SGDID:S0004799, Chr XIII from 635983-634688, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YMR187C // cdna:known chromosome:SGD1:XIII:634688:635983:-1 gene:YMR187C // ensembl // 11 // --- --- No cerevisiae_gene -1.07261695801981 -1.3220855324974 1.40841540071801 -1.45177898860509 -1.01245048067384 Max fold change below threshold 4 1.45177898860509 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771578_at YDR036C.S1 Protein of unconfirmed function, plays an indirect role in endocytic membrane trafficking, member of a family of enoyl-CoA hydratase/isomerases 1.45173444279585 804.815002441406 1124.87738037109 EHD3 6635 // fatty acid beta-oxidation // inferred from sequence similarity /// 6897 // endocytosis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay 3860 // 3-hydroxyisobutyryl-CoA hydrolase activity // inferred from direct assay 1057.62097167969 728.522338867188 881.107666015625 1192.1337890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR036C /GEN=EHD3 /DB_XREF=GI:6320241 /SEG=NC_001136:-523206,524708 /DEF=Protein of unconfirmed function, plays an indirect role in endocytic membrane trafficking, member of a family of enoyl-CoA hydratase/isomerases /NOTE=Ehd3p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: 3-hydroxyisobutyryl-CoA hydrolase activity [goid GO:0003860] [evidence IDA] [pmid 12697341]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 11378903]; go_process: fatty acid beta-oxidation [goid GO:0006635] [evidence ISS] [pmid 12697341] --- --- --- --- --- --- S0002443 // EHD3 SGDID:S0002443, Chr IV from 524709-523207, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023868 // cdna:GeneFinder chromosome:SGD1:IV:523207:524709:-1 // ensembl // 11 // --- /// GENSCAN00000025124 // cdna:Genscan chromosome:SGD1:IV:523207:524709:-1 // ensembl // 11 // --- /// YDR036C // cdna:known chromosome:SGD1:IV:523207:524709:-1 gene:YDR036C // ensembl // 11 // --- --- No cerevisiae_gene -1.1037400461992 -1.45173444279585 -1.01217904990794 -1.20033114280149 1.12718433255837 Max fold change below threshold 4 1.45173444279585 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778958_at YPL072W.S1 Putative ubiquitin-specific protease 1.45170251250514 96.0252227783203 131.564872741699 UBP16 16579 // protein deubiquitination // traceable author statement 5737 // cytoplasm // inferred from curator 4843 // ubiquitin-specific protease activity // traceable author statement 133.554626464844 91.9986190795898 100.051826477051 129.575119018555 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL072W /GEN=UBP16 /DB_XREF=GI:6325184 /SEG=NC_001148:+418507,420006 /DEF=Putative ubiquitin-specific protease /NOTE=Ubp16p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 8982460]; go_function: ubiquitin-specific protease activity [goid GO:0004843] [evidence TAS] [pmid 8982460]; go_process: protein deubiquitination [goid GO:0016579] [evidence TAS] [pmid 8982460] --- --- --- --- --- S0005993 // span:21-40 // numtm:1 S0005993 // UBP16 SGDID:S0005993, Chr XVI from 418509-420008, Verified ORF // sgd // 11 // --- /// GENSCAN00000017133 // cdna:Genscan chromosome:SGD1:XVI:418509:420008:1 // ensembl // 11 // --- /// GENEFINDER00000021004 // cdna:GeneFinder chromosome:SGD1:XVI:418509:420008:1 // ensembl // 11 // --- /// YPL072W // cdna:known chromosome:SGD1:XVI:418509:420008:1 gene:YPL072W // ensembl // 11 // --- --- No cerevisiae_gene 1.214943018309 -1.45170251250514 -1.32471694216643 -1.33485445660982 -1.03071197214736 Max fold change below threshold 4 1.45170251250514 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773071_at YPR156C.S1 Polyamine transport protein specific for spermine; localizes to the plasma membrane; member of the major facilitator superfamily 1.45110109518388 69.7404403686523 51.5423336029053 TPO3 15846 // polyamine transport // inferred from mutant phenotype 5774 // vacuolar membrane // inferred from mutant phenotype /// 5886 // plasma membrane // inferred from direct assay 297 // spermine transporter activity // inferred from mutant phenotype 51.2694358825684 65.5313034057617 73.949577331543 51.8152313232422 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR156C /GEN=TPO3 /DB_XREF=GI:6325414 /SEG=NC_001148:-837903,839771 /DEF=Polyamine transport protein /NOTE=Tpo3p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12562762]; go_component: vacuolar membrane [goid GO:0005774] [evidence IMP] [pmid 11171066]; go_function: spermine transporter activity [goid GO:0000297] [evidence IMP] [pmid 11171066]; go_process: polyamine transport [goid GO:0015846] [evidence IMP] [pmid 11171066] --- --- --- --- --- S0006360 // span:184-206,216-238,245-267,271-293,305-327,342-364,411-433,448-467,488-510,514-536,549-571,581-603 // numtm:12 S0006360 // TPO3 SGDID:S0006360, Chr XVI from 839773-837905, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017299 // cdna:Genscan chromosome:SGD1:XVI:837905:839773:-1 // ensembl // 11 // --- /// GENEFINDER00000020924 // cdna:GeneFinder chromosome:SGD1:XVI:837905:839773:-1 // ensembl // 11 // --- /// YPR156C // cdna:known chromosome:SGD1:XVI:837905:839773:-1 gene:YPR156C // ensembl // 11 // --- --- No cerevisiae_gene -1.08135810785151 1.27817484779548 -1.45110109518388 1.44237158179238 1.01064562992119 Max fold change below threshold 4 1.45110109518388 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776725_at YOR226C.S1 Conserved protein of the mitochondrial matrix, required for synthesis of mitochondrial and cytosolic iron-sulfur proteins, performs a scaffolding function in mitochondria during Fe/S cluster assembly; isu1 isu2 double mutant is inviable 1.45100991505367 395.990234375 472.811279296875 ISU2 6879 // iron ion homeostasis // inferred from mutant phenotype /// 6879 // iron ion homeostasis // inferred from sequence similarity /// 16226 // iron-sulfur cluster assembly // inferred from mutant phenotype /// 16226 // iron-sulfur cluster assembly // inferred from sequence similarity 5759 // mitochondrial matrix // inferred from direct assay --- 445.338775634766 344.018951416016 447.961517333984 500.283782958984 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR226C /GEN=ISU2 /DB_XREF=GI:6324800 /SEG=NC_001147:-761614,762084 /DEF=Iron-sulfur cluster nifU-like protein /NOTE=Isu2p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 10468587]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IMP,ISS] [pmid 10468587]; go_process: iron-sulfur cluster assembly [goid GO:0016226] [evidence IMP,ISS] [pmid 10588895] --- --- --- --- scop // a.4.1.Centromere-binding // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding // 3.40000009536743 --- S0005752 // ISU2 SGDID:S0005752, Chr XV from 762084-761614, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017643 // cdna:Genscan chromosome:SGD1:XV:761614:762084:-1 // ensembl // 11 // --- /// GENEFINDER00000022822 // cdna:GeneFinder chromosome:SGD1:XV:761614:762084:-1 // ensembl // 11 // --- /// YOR226C // cdna:known chromosome:SGD1:XV:761614:762084:-1 gene:YOR226C // ensembl // 11 // --- YOR225W // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene 1.45100991505367 -1.29451814733377 1.02687560718902 1.00588931807135 1.12337799969451 Max fold change below threshold 4 1.45100991505367 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773887_at YDL065C.S1 Chaperone and import receptor for newly-synthesized class I peroxisomal membrane proteins (PMPs), binds PMPs in the cytoplasm and delivers them to the peroxisome for subsequent insertion into the peroxisomal membrane 1.44995485792911 814.479949951172 660.264770507813 PEX19 6457 // protein folding // traceable author statement /// 6625 // protein-peroxisome targeting // inferred from mutant phenotype /// 7031 // peroxisome organization and biogenesis // inferred from mutant phenotype /// 45046 // peroxisome membrane protein import // traceable author statement 5829 // cytosol // inferred from direct assay 5515 // protein binding // inferred from direct assay 620.531677246094 836.978393554688 791.981506347656 699.997863769531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL065C /GEN=PEX19 /DB_XREF=GI:6320138 /SEG=NC_001136:-336249,337301 /DEF=40 kDa farnesylated protein associated with peroxisomes /NOTE=Pex19p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 9418908]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence IMP] [pmid 9418908]; go_process: protein-peroxisome targeting [goid GO:0006625] [evidence IMP] [pmid 10637226] --- --- --- --- --- --- S0002223 // PEX19 SGDID:S0002223, Chr IV from 337301-336249, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023642 // cdna:GeneFinder chromosome:SGD1:IV:336249:337301:-1 // ensembl // 11 // --- /// GENSCAN00000025052 // cdna:Genscan chromosome:SGD1:IV:336249:337301:-1 // ensembl // 11 // --- /// YDL065C // cdna:known chromosome:SGD1:IV:336249:337301:-1 gene:YDL065C // ensembl // 11 // --- --- No cerevisiae_gene 1.44995485792911 1.34880848834209 1.25432882410979 1.27629504727696 1.12806145026489 Max fold change below threshold 4 1.44995485792911 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769539_at YNL222W.S1 Transcription/RNA-processing factor that associates with TFIIB and cleavage/polyadenylation factor Pta1p, exhibits intrinsic phosphatase activity, affects start site selection in vivo 1.44971709754378 562.260528564453 649.230834960938 SSU72 6365 // 35S primary transcript processing // inferred from mutant phenotype /// 6367 // transcription initiation from RNA polymerase II promoter // inferred from genetic interaction /// 6367 // transcription initiation from RNA polymerase II promoter // inferred from physical interaction /// 6369 // transcription termination from RNA polymerase II promoter // inferred from mutant phenotype /// 9302 // snoRNA transcription // inferred from mutant phenotype /// 30846 // transcription termination from Pol II promoter, RNA polymerase(A) coupled // inferred from mutant phenotype /// 30846 // transcription termination from Pol II promoter, RNA polymerase(A) coupled // inferred from physical interaction /// 30847 // transcription termination from Pol II promoter, RNA polymerase(A)-independent // inferred from mutant phenotype /// 30847 // transcription termination from Pol II promoter, RNA polymerase(A)-independent // inferred from physical interaction 5634 // nucleus // inferred from genetic interaction /// 5634 // nucleus // inferred from physical interaction /// 5847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from physical interaction 3723 // RNA binding // inferred from curator /// 4721 // phosphoprotein phosphatase activity // inferred from genetic interaction /// 4721 // phosphoprotein phosphatase activity // inferred from physical interaction /// 4725 // protein tyrosine phosphatase activity // inferred from sequence similarity /// 42578 // phosphoric ester hydrolase activity // inferred from direct assay 633.494384765625 554.511108398438 570.009948730469 664.96728515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL222W /GEN=SSU72 /DB_XREF=GI:6324107 /SEG=NC_001146:+229093,229713 /DEF=functionally related to TFIIB, affects start site selection in vivo /NOTE=Ssu72p; go_component: mRNA cleavage and polyadenylation specificity factor complex [goid GO:0005847] [evidence IPI] [pmid 12819204]; go_component: nucleus [goid GO:0005634] [evidence IGI,IPI] [pmid 11046131]; go_function: phosphoprotein phosphatase activity [goid GO:0004721] [evidence IGI,IPI] [pmid 12660165]; go_function: phosphoric ester hydrolase activity [goid GO:0042578] [evidence IDA] [pmid 12606538]; go_function: protein tyrosine phosphatase activity [goid GO:0004725] [evidence ISS] [pmid 12606538]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence IMP] [pmid 12837249]; go_process: snoRNA transcription [goid GO:0009302] [evidence IMP] [pmid 12660165]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence IGI,IPI] [pmid 11046131]; go_process: transcription termination from Pol II promoter [goid GO:0006369] [evidence IMP] [pmid 12660165]; go_process: transcription termination from Pol II promoter, poly(A) coupled [goid GO:0030846] [evidence IPI] [pmid 12819204]; go_process: transcription termination from Pol II promoter, poly(A) coupled [goid GO:0030846] [evidence IMP] [pmid 12944462]; go_process: transcription termination from Pol II promoter, poly(A)-independent [goid GO:0030847] [evidence IPI] [pmid 12819204]; go_process: transcription termination from Pol II promoter, poly(A)-independent [goid GO:0030847] [evidence IMP] [pmid 12944462] --- --- --- --- --- --- S0005166 // SSU72 SGDID:S0005166, Chr XIV from 229093-229713, Verified ORF // sgd // 11 // --- /// GENSCAN00000019862 // cdna:Genscan chromosome:SGD1:XIV:229093:229713:1 // ensembl // 11 // --- /// YNL222W // cdna:known chromosome:SGD1:XIV:229093:229713:1 gene:YNL222W // ensembl // 11 // --- --- No cerevisiae_gene -1.25137205264356 -1.14243768099671 -1.44971709754378 -1.1113742596538 1.04968141967394 Max fold change below threshold 4 1.44971709754378 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775760_at YDL015C.S1 Enoyl reductase that catalyzes the last step in each cycle of very long chain fatty acid elongation, localizes to the ER, highly enriched in a structure marking nuclear-vacuolar junctions, coimmunoprecipitates with elongases Fen1p and Sur4p 1.44965673069493 2295.3388671875 3109.52453613281 TSC13 38 // very-long-chain fatty acid metabolism // inferred from mutant phenotype /// 38 // very-long-chain fatty acid metabolism // inferred from genetic interaction /// 38 // very-long-chain fatty acid metabolism // inferred from physical interaction 5739 // mitochondrion // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // inferred from genetic interaction /// 5789 // endoplasmic reticulum membrane // inferred from sequence similarity 16491 // oxidoreductase activity // inferred from mutant phenotype /// 16491 // oxidoreductase activity // inferred from sequence similarity 3320.68188476563 2300.01000976563 2290.66772460938 2898.3671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL015C /GEN=TSC13 /DB_XREF=GI:6320189 /SEG=NC_001136:-425999,426931 /DEF=ER protein involved in very long chain fatty acid synthesis /NOTE=Tsc13p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA,IGI,ISS] [pmid 11113186]; go_function: oxidoreductase activity [goid GO:0016491] [evidence IMP,ISS] [pmid 11113186]; go_process: very-long-chain fatty acid metabolism [goid GO:0000038] [evidence IGI,IMP,IPI] [pmid 11113186] --- --- --- --- --- S0002173 // span:166-188,203-222,243-265,269-291 // numtm:4 S0002173 // TSC13 SGDID:S0002173, Chr IV from 426931-425999, reverse complement, Verified ORF // sgd // 11 // --- /// YDL015C // cdna:known chromosome:SGD1:IV:425999:426931:-1 gene:YDL015C // ensembl // 11 // --- --- No cerevisiae_gene -1.06831474109563 -1.44376844912254 -1.06957697117229 -1.44965673069493 -1.14570779681987 Max fold change below threshold 4 1.44965673069493 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774079_at YGL129C.S1 Mitochondrial ribosomal protein of the small subunit, has similarity to mammalian apoptosis mediator proteins; null mutation prevents induction of apoptosis by overproduction of metacaspase Mca1p 1.44957260131359 485.280334472656 591.636138916016 RSM23 6412 // protein biosynthesis // inferred from direct assay 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // inferred from direct assay 542.649047851563 407.312622070313 563.248046875 640.623229980469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL129C /GEN=RSM23 /DB_XREF=GI:6321309 /SEG=NC_001139:-267726,269192 /DEF=Mitochondrial ribosomal protein of the small subunit, has similarity to mammalian apoptosis mediator proteins; null mutation prevents induction of apoptosis by overproduction of metacaspase Mca1p /NOTE=Rsm23p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 11278769]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 11278769]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 11278769] --- --- --- --- --- --- S0003097 // RSM23 SGDID:S0003097, Chr VII from 269194-267728, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019253 // cdna:Genscan chromosome:SGD1:VII:267728:269080:-1 // ensembl // 11 // --- /// GENEFINDER00000021750 // cdna:GeneFinder chromosome:SGD1:VII:267728:268297:-1 // ensembl // 10 // --- /// YGL129C // cdna:known chromosome:SGD1:VII:267728:269194:-1 gene:YGL129C // ensembl // 11 // --- --- No cerevisiae_gene 1.44957260131359 -1.33226671222059 1.3769275344453 1.03796007586301 1.18054796652975 Max fold change below threshold 4 1.44957260131359 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774678_at YPL015C.S1 Cytoplasmic member of the silencing information regulator 2 (Sir2) family of NAD(+)-dependent protein deacetylases; modulates nucleolar (rDNA) and telomeric silencing; possesses NAD(+)-dependent histone deacetylase activity in vitro 1.44955227726301 350.630081176758 251.011947631836 HST2 6348 // chromatin silencing at telomere // inferred from genetic interaction /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 17136 // NAD-dependent histone deacetylase activity // inferred from direct assay 263.884918212891 318.745178222656 382.514984130859 238.138977050781 0.000732421991415322 0.00585938012227416 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL015C /GEN=HST2 /DB_XREF=GI:6325242 /SEG=NC_001148:-525805,526878 /DEF=Homolog of SIR2 /NOTE=Hst2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11226170]; go_function: NAD-dependent histone deacetylase activity [goid GO:0017136] [evidence IDA] [pmid 10841563]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IGI,IMP] [pmid 11226170] --- --- --- --- --- --- S0005936 // HST2 SGDID:S0005936, Chr XVI from 526880-525807, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017173 // cdna:Genscan chromosome:SGD1:XVI:525807:526880:-1 // ensembl // 11 // --- /// GENEFINDER00000020978 // cdna:GeneFinder chromosome:SGD1:XVI:525807:526853:-1 // ensembl // 11 // --- /// YPL015C // cdna:known chromosome:SGD1:XVI:525807:526880:-1 gene:YPL015C // ensembl // 11 // --- --- No cerevisiae_gene -1.38041753611451 1.20789463975924 -1.43829135202761 1.44955227726301 -1.10811309211519 Max fold change below threshold 4 1.44955227726301 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1778794_at YLR340W.S1 Conserved ribosomal protein P0 similar to rat P0, human P0, and E. coli L10e; shown to be phosphorylated on serine 302 1.44939721093699 4949.9140625 5499.70385742188 RPP0 27 // ribosomal large subunit assembly and maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement /// 6414 // translational elongation // inferred from sequence similarity 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 6420.4326171875 5470.10205078125 4429.72607421875 4578.97509765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR340W /GEN=RPP0 /DB_XREF=GI:6323371 /SEG=NC_001144:+805887,806825 /DEF=Homology to rat P0, human P0, and E. coli L10e /NOTE=Rpp0p; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9559554]; go_process: ribosomal large subunit assembly and maintenance [goid GO:0000027] [evidence IMP] [pmid 8195220]; go_process: translational elongation [goid GO:0006414] [evidence ISS] [pmid 9175862] --- --- --- --- --- --- S0004332 // RPP0 SGDID:S0004332, Chr XII from 805887-806825, Verified ORF // sgd // 11 // --- /// X06959 // Yeast mRNA for acidic ribosomal protein A0. // gb // 11 // --- /// GENSCAN00000018078 // cdna:Genscan chromosome:SGD1:XII:805887:806825:1 // ensembl // 11 // --- /// GENEFINDER00000024681 // cdna:GeneFinder chromosome:SGD1:XII:805887:806825:1 // ensembl // 11 // --- /// YLR340W // cdna:known chromosome:SGD1:XII:805887:806825:1 gene:YLR340W // ensembl // 11 // --- YLR339C // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene -1.19427082614297 -1.17373178006259 -1.36411547499509 -1.44939721093699 -1.40215495394893 Max fold change below threshold 4 1.44939721093699 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770739_at YLR166C.S1 Essential 100kDa subunit of the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, and Exo84p), which has the essential function of mediating polarized targeting of secretory vesicles to active sites of exocytosis 1.4492184600343 358.963714599609 462.914978027344 SEC10 910 // cytokinesis // inferred from mutant phenotype /// 6893 // Golgi to plasma membrane transport // traceable author statement /// 6904 // vesicle docking during exocytosis // traceable author statement /// 6906 // vesicle fusion // traceable author statement /// 7121 // bipolar bud site selection // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // traceable author statement 145 // exocyst // traceable author statement /// 145 // exocyst // inferred from physical interaction 5515 // protein binding // inferred from direct assay /// 5515 // protein binding // inferred from physical interaction /// 5515 // protein binding // inferred from genetic interaction 470.082763671875 354.057647705078 363.869781494141 455.747192382813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR166C /GEN=SEC10 /DB_XREF=GI:6323195 /SEG=NC_001144:-495431,498046 /DEF=100 kD component of the Exocyst complex; required for exocytosis. The Exocyst complex contains the gene products encoded by SEC3, SEC5, SEC6, SEC8, SEC10, SEC15 and EXO70. /NOTE=Sec10p; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IDA] [pmid 10652251]; go_component: exocyst [goid GO:0000145] [evidence TAS] [pmid 9700152]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 9658167]; go_process: Golgi to plasma membrane transport [goid GO:0006893] [evidence TAS] [pmid 9700152]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence TAS] [pmid 9700152]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251]; go_process: vesicle docking during exocytosis [goid GO:0006904] [evidence TAS] [pmid 9700152]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 9700152] --- --- --- --- --- --- S0004156 // SEC10 SGDID:S0004156, Chr XII from 498046-495431, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017949 // cdna:Genscan chromosome:SGD1:XII:495431:498046:-1 // ensembl // 11 // --- /// YLR166C // cdna:known chromosome:SGD1:XII:495431:498046:-1 gene:YLR166C // ensembl // 11 // --- --- No cerevisiae_gene -1.4492184600343 -1.32770119984371 1.03994216443975 -1.29189833170976 -1.03145509512436 Max fold change below threshold 4 1.4492184600343 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776793_at YGR189C.S1 Putative glycosidase of the cell wall, may have a role in cell wall architecture 1.4488434374126 2484.86437988281 2115.85278320313 CRH1 --- 131 // incipient bud site // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 2000.2841796875 2446.78588867188 2522.94287109375 2231.42138671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR189C /GEN=CRH1 /DB_XREF=GI:6321628 /SEG=NC_001139:-876672,878195 /DEF=Putative glycosidase of the cell wall, may have a role in cell wall architecture /NOTE=Crh1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10757808]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 10757808]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003421 // CRH1 SGDID:S0003421, Chr VII from 878197-876674, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019488 // cdna:Genscan chromosome:SGD1:VII:876674:878197:-1 // ensembl // 11 // --- /// GENEFINDER00000021639 // cdna:GeneFinder chromosome:SGD1:VII:876674:878197:-1 // ensembl // 11 // --- /// YGR189C // cdna:known chromosome:SGD1:VII:876674:878197:-1 gene:YGR189C // ensembl // 11 // --- --- No cerevisiae_gene 1.32984656477034 1.22321913731984 -1.4488434374126 1.26129221873259 1.11555218472375 Max fold change below threshold 4 1.4488434374126 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773938_at YKL086W.S1 Sulfiredoxin, contributes to oxidative stress resistance by reducing cysteine-sulfinic acid groups in the peroxiredoxins Tsa1p and Ahp1p that are formed upon exposure to oxidants; conserved in higher eukaryotes 1.44839343631513 355.36897277832 276.739105224609 SRX1 6979 // response to oxidative stress // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 16667 // oxidoreductase activity, acting on sulfur group of donors // inferred from direct assay 267.758575439453 387.819763183594 322.918182373047 285.719635009766 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL086W /GEN=SRX1 /DB_XREF=GI:6322764 /SEG=NC_001143:+277926,278309 /DEF=Sulfiredoxin, contributes to oxidative stress resistance by reducing cysteine-sulfinic acid groups in the peroxiredoxins Tsa1p and Ahp1p that are formed upon exposure to oxidants; conserved in higher eukaryotes /NOTE=Srx1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: oxidoreductase activity, acting on sulfur group of donors [goid GO:0016667] [evidence IDA] [pmid 14586471]; go_process: response to oxidative stress [goid GO:0006979] [evidence IMP] [pmid 14586471] --- --- --- --- --- --- S0001569 // SRX1 SGDID:S0001569, Chr XI from 277926-278309, Verified ORF // sgd // 10 // --- /// YKL086W // cdna:known chromosome:SGD1:XI:277926:278309:1 gene:YKL086W // ensembl // 10 // --- GENEFINDER00000023070 // ensembl // 8 // Cross Hyb Matching Probes /// GENSCAN00000018354 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 1.41645443714794 1.44839343631513 -1.02471330750697 1.20600500597624 1.06707930657621 Max fold change below threshold 4 1.44839343631513 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775108_at YDL203C.S1 Hypothetical protein 1.44823511468825 323.955856323242 452.259719848633 --- --- 5739 // mitochondrion // inferred from direct assay --- 452.934692382813 317.015167236328 330.896545410156 451.584747314453 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL203C /GEN=RTN2 /DB_XREF=GI:6319998 /SEG=NC_001136:-96083,97954 /DEF=Hypothetical ORF /NOTE=Ydl203cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.5.Prefoldin // All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin // 7.30000019073486 --- S0002362 // YDL203C SGDID:S0002362, Chr IV from 97954-96083, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023629 // cdna:GeneFinder chromosome:SGD1:IV:96083:97954:-1 // ensembl // 11 // --- /// GENSCAN00000024952 // cdna:Genscan chromosome:SGD1:IV:96083:97954:-1 // ensembl // 11 // --- /// YDL203C // cdna:known chromosome:SGD1:IV:96083:97954:-1 gene:YDL203C // ensembl // 11 // --- --- No cerevisiae_gene -1.44823511468825 -1.42874770419158 -1.21870973357442 -1.36881058042291 -1.00298935045169 Max fold change below threshold 4 1.44823511468825 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777244_at YFR052W.S1 Subunit of the 19S regulatory particle of the 26S proteasome lid; synthetically lethal with RPT1, which is an ATPase component of the 19S regulatory particle; physically interacts with Nob1p and Rpn3p 1.44819880985311 2038.58209228516 1461.94049072266 RPN12 6511 // ubiquitin-dependent protein catabolism // inferred from mutant phenotype 8541 // proteasome regulatory particle, lid subcomplex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // non-traceable author statement 1455.00109863281 1970.03332519531 2107.130859375 1468.8798828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR052W /GEN=RPN12 /DB_XREF=GI:14318577 /SEG=NC_001138:+252492,253316 /DEF=Subunit of the 19S regulatory particle of the 26S proteasome lid; synthetically lethal with RPT1, which is an ATPase component of the 19S regulatory particle; physically interacts with Nob1p and Rpn3p /NOTE=Rpn12p; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence IDA] [pmid 9584156]; go_function: endopeptidase activity [goid GO:0004175] [evidence NAS] [pmid 10675611]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence IMP] [pmid 10490625] --- --- --- --- --- --- S0001948 // RPN12 SGDID:S0001948, Chr VI from 252492-253316, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018532 // cdna:GeneFinder chromosome:SGD1:VI:252492:253316:1 // ensembl // 11 // --- /// GENSCAN00000023288 // cdna:Genscan chromosome:SGD1:VI:252492:253316:1 // ensembl // 11 // --- /// YFR052W // cdna:known chromosome:SGD1:VI:252492:253316:1 gene:YFR052W // ensembl // 11 // --- M14410 // gb // 5 // Negative Strand Matching Probes /// M14411 // gb // 5 // Negative Strand Matching Probes No cerevisiae_gene -1.05068464278754 1.35397377159814 1.05295431326944 1.44819880985311 1.0095386760826 Max fold change below threshold 4 1.44819880985311 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773884_at YOR303W.S1 Small subunit of carbamoyl phosphate synthetase, which catalyzes a step in the synthesis of citrulline, an arginine precursor; translationally regulated by an attenuator peptide encoded by YOR302W within the CPA1 mRNA 5'-leader 1.44793004949294 3991.14794921875 4228.63916015625 CPA1 6526 // arginine biosynthesis // traceable author statement 5951 // carbamoyl-phosphate synthase complex // inferred from sequence similarity 4088 // carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity // inferred from sequence similarity /// 4088 // carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity // inferred from mutant phenotype 4710.5576171875 4414.55859375 3567.7373046875 3746.720703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR303W /GEN=CPA1 /DB_XREF=GI:6324878 /SEG=NC_001147:+882895,884130 /DEF=Small subunit of carbamoyl phosphate synthetase, which catalyzes a step in the synthesis of citrulline, an arginine precursor; translationally regulated by an attenuator peptide encoded by YOR302W within the CPA1 mRNA 5'-leader /NOTE=Cpa1p; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 205532]; go_function: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [goid GO:0004088] [evidence IMP,ISS] [pmid 6086650]; go_process: arginine biosynthesis [goid GO:0006526] [evidence TAS] [pmid 205532] --- --- --- --- scop // a.140.1.LEM domain // All alpha proteins; LEM/SAP HeH motif; LEM domain; LEM domain // 3.90000009536743 --- S0005829 // CPA1 SGDID:S0005829, Chr XV from 882895-884130, Verified ORF // sgd // 10 // --- /// GENEFINDER00000022876 // cdna:GeneFinder chromosome:SGD1:XV:880961:887872:1 // ensembl // 10 // --- /// GENSCAN00000017757 // cdna:Genscan chromosome:SGD1:XV:882895:884130:1 // ensembl // 10 // --- /// YOR303W // cdna:known chromosome:SGD1:XV:882895:884130:1 gene:YOR303W // ensembl // 10 // --- --- No cerevisiae_gene 1.04591466849213 -1.06705065005968 -1.44793004949294 -1.3203207565194 -1.25724813521825 Max fold change below threshold 4 1.44793004949294 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776636_s_at YBR118W.S1 Translational elongation factor EF-1 alpha; also encoded by TEF2 /// Translational elongation factor EF-1 alpha; also encoded by TEF1 1.4472806871849 TEF1 /// TEF2 6414 // translational elongation // traceable author statement 5840 // ribosome // traceable author statement /// 5853 // eukaryotic translation elongation factor 1 complex // inferred from sequence similarity 3746 // translation elongation factor activity // traceable author statement 10679.412109375 14796.0322265625 7644.1416015625 7378.9501953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR118W /GEN=TEF2 /DB_XREF=GI:6319594 /SEG=NC_001134:+477627,479003 /DEF=functions in the binding reaction of aminoacyl-tRNA (AA-tRNA) to ribosomes /NOTE=Tef2p; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 9841679]; go_function: translation elongation factor activity [goid GO:0003746] [evidence TAS] [pmid 9841679]; go_process: translational elongation [goid GO:0006414] [evidence TAS] [pmid 9841679] --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 9.5 --- S0000322 // TEF2 SGDID:S0000322, Chr II from 477665-479041, Verified ORF // sgd // 11 // --- /// S0006284 // TEF1 SGDID:S0006284, Chr XVI from 700592-701968, Verified ORF // sgd // 11 // --- /// GENSCAN00000021234 // cdna:Genscan chromosome:SGD1:II:477665:479041:1 // ensembl // 11 // --- /// GENEFINDER00000022330 // cdna:GeneFinder chromosome:SGD1:II:477665:479041:1 // ensembl // 11 // --- /// GENSCAN00000017245 // cdna:Genscan chromosome:SGD1:XVI:700592:701968:1 // ensembl // 11 // --- /// GENEFINDER00000020976 // cdna:GeneFinder chromosome:SGD1:XVI:700592:701968:1 // ensembl // 11 // --- /// YBR118W // cdna:known chromosome:SGD1:II:477665:479041:1 gene:YBR118W // ensembl // 11 // --- /// YPR080W // cdna:known chromosome:SGD1:XVI:700592:701968:1 gene:YPR080W // ensembl // 11 // --- --- No cerevisiae_gene -1.32855804667288 1.38547254053186 -1.24061972686149 -1.39707146544644 -1.4472806871849 Max fold change below threshold 4 1.4472806871849 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778105_at YNL092W.S1 Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family 1.4465797411696 417.875137329102 430.528961181641 --- --- --- 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from sequence similarity 436.449371337891 408.091491699219 427.658782958984 424.608551025391 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL092W /GEN=YPT53 /DB_XREF=GI:6324237 /SEG=NC_001146:+450871,452073 /DEF=Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family /NOTE=Ynl092wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: S-adenosylmethionine-dependent methyltransferase activity [goid GO:0008757] [evidence ISS] [pmid 12872006]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005036 // YNL092W SGDID:S0005036, Chr XIV from 450871-452073, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019960 // cdna:Genscan chromosome:SGD1:XIV:450871:452073:1 // ensembl // 11 // --- /// YNL092W // cdna:known chromosome:SGD1:XIV:450871:452073:1 gene:YNL092W // ensembl // 11 // --- --- No cerevisiae_gene -1.4465797411696 -1.06948902443566 1.0408011062839 -1.02055514519796 -1.02788643865957 Max fold change below threshold 4 1.4465797411696 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771169_at YLR249W.S1 Translational elongation factor, stimulates the binding of aminoacyl-tRNA (AA-tRNA) to ribosomes by releasing EF-1 alpha from the ribosomal complex; contains two ABC cassettes; binds and hydrolyses ATP 1.4464137646025 5605.3671875 4156.57678222656 YEF3 6414 // translational elongation // traceable author statement 5840 // ribosome // inferred from direct assay 3746 // translation elongation factor activity // traceable author statement 4414.17578125 6384.724609375 4826.009765625 3898.97778320313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR249W /GEN=YEF3 /DB_XREF=GI:6323278 /SEG=NC_001144:+636782,639916 /DEF=stimulates the binding of aminoacyl-tRNA (AA-tRNA) to ribosomes by releasing EF-1 alpha from the ribosomal complex; contains two ABC cassettes, and binds and hydrolyses ATP /NOTE=Yef3p; go_component: ribosome [goid GO:0005840] [evidence IDA] [pmid 9553076]; go_function: translation elongation factor activity [goid GO:0003746] [evidence TAS] [pmid 9841679]; go_process: translational elongation [goid GO:0006414] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0004239 // YEF3 SGDID:S0004239, Chr XII from 636782-639916, Verified ORF // sgd // 11 // --- /// GENSCAN00000018013 // cdna:Genscan chromosome:SGD1:XII:636782:639916:1 // ensembl // 11 // --- /// GENEFINDER00000024893 // cdna:GeneFinder chromosome:SGD1:XII:636782:639916:1 // ensembl // 11 // --- /// YLR249W // cdna:known chromosome:SGD1:XII:636782:639916:1 gene:YLR249W // ensembl // 11 // --- --- No cerevisiae_gene 1.33489151605844 1.4464137646025 -1.33952065357447 1.09329804810319 -1.13213668471422 Max fold change below threshold 4 1.4464137646025 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772752_at YHR050W.S1 Divalent metal ion transporter involved in manganese homeostasis; has broad specificity for di-valent and tri-valent metals; post-translationally regulated by levels of metal ions; member of the Nramp family of metal transport proteins 1.44635054386896 2778.01806640625 2094.25366210938 SMF2 6828 // manganese ion transport // inferred from genetic interaction /// 6828 // manganese ion transport // inferred from sequence similarity 5739 // mitochondrion // inferred from direct assay /// 16023 // cytoplasmic membrane-bound vesicle // inferred from direct assay 5384 // manganese ion transporter activity // inferred from sequence similarity /// 5384 // manganese ion transporter activity // inferred from genetic interaction /// 15082 // di-, tri-valent inorganic cation transporter activity // inferred from direct assay 1940.86938476563 2748.85864257813 2807.17749023438 2247.63793945313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR050W /GEN=SMF2 /DB_XREF=GI:6321841 /SEG=NC_001140:+207647,209296 /DEF=SMF2 was isolated as a high copy suppressor of a temperature sensitive mutation in the PEP ( mitochondrial matrix protease) gene and may influence PEP-dependent protein import /NOTE=Smf2p; go_component: cytoplasmic vesicle [goid GO:0016023] [evidence IDA] [pmid 11602606]; go_function: manganese ion transporter activity [goid GO:0005384] [evidence IGI,ISS] [pmid 9360964]; go_process: manganese ion transport [goid GO:0006828] [evidence IGI,ISS] [pmid 9360964] --- --- --- --- --- S0001092 // span:60-82,92-114,127-146,161-183,196-218,244-266,313-335,350-372,405-422,432-454,518-540 // numtm:11 S0001092 // SMF2 SGDID:S0001092, Chr VIII from 207647-209296, Verified ORF // sgd // 11 // --- /// GENSCAN00000016597 // cdna:Genscan chromosome:SGD1:VIII:207647:209296:1 // ensembl // 11 // --- /// GENEFINDER00000020307 // cdna:GeneFinder chromosome:SGD1:VIII:207647:209296:1 // ensembl // 11 // --- /// YHR050W // cdna:known chromosome:SGD1:VIII:207647:209296:1 gene:YHR050W // ensembl // 11 // --- --- No cerevisiae_gene 1.16098742597456 1.416302747704 -1.05191843630461 1.44635054386896 1.15805728973593 Max fold change below threshold 4 1.44635054386896 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771053_at SPBC1711.16.S1 --- 1.44626847349839 --- --- --- --- 7.07296848297119 10.0467710494995 9.87614154815674 4.89049482345581 0.219482004642487 0.111571997404099 0.014160200022161 0.129638999700546 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1711.16 /DEF=WD repeat protein --- --- --- --- --- --- SPBC1711.16 // |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.1768660310428 1.42044617810584 -1.3469033804954 1.39632200708012 -1.44626847349839 Max fold change below threshold 4 1.44626847349839 Max fold change below threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1770436_at YML067C.S1 Protein localized to COPII-coated vesicles, forms a complex with Erv46p; involved in the membrane fusion stage of transport 1.44621573915405 1238.00762939453 1088.15411376953 ERV41 6888 // ER to Golgi transport // inferred from physical interaction 30138 // COPII-coated vesicle // inferred from direct assay /// 30173 // integral to Golgi membrane // inferred from direct assay /// 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay --- 1042.880859375 1157.25341796875 1318.76184082031 1133.42736816406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML067C /GEN=ERV41 /DB_XREF=GI:6323573 /SEG=NC_001145:-139063,140214 /DEF=Protein localized to COPII-coated vesicles, forms a complex with Erv46p; involved in the membrane fusion stage of transport /NOTE=Erv41p; go_component: COPII-coated vesicle [goid GO:0030138] [evidence IDA] [pmid 11157978]; go_component: integral to Golgi membrane [goid GO:0030173] [evidence IDA] [pmid 11157978]; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA] [pmid 11157978]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IPI] [pmid 11157978] --- --- --- --- --- S0004532 // span:29-51,302-324 // numtm:2 S0004532 // ERV41 SGDID:S0004532, Chr XIII from 140214-140184,140090-139063, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000018660 // cdna:Genscan chromosome:SGD1:XIII:139063:139857:-1 // ensembl // 11 // --- /// YML067C // cdna:known chromosome:SGD1:XIII:139063:140214:-1 gene:YML067C // ensembl // 11 // --- --- No cerevisiae_gene 1.31100385332097 1.10966982236331 1.44621573915405 1.26453739079136 1.08682344485959 Max fold change below threshold 4 1.44621573915405 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770532_at YLR303W.S1 O-acetyl homoserine-O-acetyl serine sulfhydrylase, required for sulfur amino acid synthesis 1.44613463638271 1710.28253173828 2387.76245117188 MET17 6555 // methionine metabolism // inferred from mutant phenotype /// 19344 // cysteine biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 3961 // O-acetylhomoserine aminocarboxypropyltransferase activity // traceable author statement /// 3961 // O-acetylhomoserine aminocarboxypropyltransferase activity // inferred from direct assay /// 4124 // cysteine synthase activity // inferred from direct assay 2359.6064453125 1788.90063476563 1631.66442871094 2415.91845703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR303W /GEN=MET17 /DB_XREF=GI:6323333 /SEG=NC_001144:+732544,733878 /DEF=O-acetyl homoserine-O-acetyl serine sulfhydrylase, required for sulfur amino acid synthesis /NOTE=Met17p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: O-acetylhomoserine aminocarboxypropyltransferase activity [goid GO:0003961] [evidence TAS] [pmid 3299001]; go_function: O-acetylhomoserine aminocarboxypropyltransferase activity [goid GO:0003961] [evidence IDA] [pmid 7765825]; go_function: cysteine synthase activity [goid GO:0004124] [evidence IDA] [pmid 7765825]; go_process: cysteine biosynthesis [goid GO:0019344] [evidence TAS] [pmid 15042590]; go_process: methionine metabolism [goid GO:0006555] [evidence IMP] [pmid 1101032] --- --- --- --- --- --- S0004294 // MET17 SGDID:S0004294, Chr XII from 732544-733878, Verified ORF // sgd // 10 // --- /// GENSCAN00000018054 // cdna:Genscan chromosome:SGD1:XII:732544:733878:1 // ensembl // 10 // --- /// GENEFINDER00000024834 // cdna:GeneFinder chromosome:SGD1:XII:732544:733878:1 // ensembl // 10 // --- /// YLR303W // cdna:known chromosome:SGD1:XII:732544:733878:1 gene:YLR303W // ensembl // 10 // --- --- No cerevisiae_gene -1.135687475926 -1.31902599812183 -1.09068868474086 -1.44613463638271 1.0238650016534 Max fold change below threshold 4 1.44613463638271 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775595_at SPCC594.07c.S1 --- 1.44589528997771 --- --- --- --- 12.8402853012085 11.5641326904297 12.7521572113037 12.0975227355957 0.0676269978284836 0.0676269978284836 0.030273400247097 0.0239257998764515 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC594.07c /DEF=sequence orphan --- --- --- --- --- --- SPCC594.07c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.44589528997771 -1.1103543728649 -1.25645268080734 -1.00691083778568 -1.06139790615374 Max fold change below threshold 4 1.44589528997771 Max fold change below threshold APAPPP No 4 0 AAPP 2 2 0 No No 1 < x = 2
1772795_at YJR135W-A.S1 Mitochondrial intermembrane space protein mediating import and insertion of polytopic inner membrane proteins; homolog of human DDP1 (deafness dystonia peptide 1) which is mutated in the X-linked Mohr-Tranebjaerg syndrome 1.445753467286 707.259826660156 693.888336181641 TIM8 45039 // mitochondrial inner membrane protein import // inferred from genetic interaction /// 45039 // mitochondrial inner membrane protein import // inferred from physical interaction /// 45039 // mitochondrial inner membrane protein import // inferred from mutant phenotype 42719 // mitochondrial intermembrane space protein transporter complex // inferred from direct assay 8565 // protein transporter activity // inferred from physical interaction /// 8565 // protein transporter activity // inferred from mutant phenotype 630.773681640625 733.336608886719 681.183044433594 757.002990722656 0.00195312988944352 0.00292969006113708 0.00195312988944352 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR135W-A /GEN=TIM8 /DB_XREF=GI:7839183 /SEG=NC_001142:+676886,677149 /DEF=Translocase of the inner membrane; mitochondrial intermembrane space protein mediating import and insertion of polytopic inner membrane proteins /NOTE=Tim8p; go_component: mitochondrial intermembrane space protein transporter complex [goid GO:0042719] [evidence IDA] [pmid 12221072]; go_function: protein transporter activity [goid GO:0008565] [evidence IMP,IPI] [pmid 10469659]; go_process: mitochondrial inner membrane protein import [goid GO:0045039] [evidence IGI] [pmid 10051608]; go_process: mitochondrial inner membrane protein import [goid GO:0045039] [evidence IMP,IPI] [pmid 10469659] --- --- --- --- --- --- S0007348 // TIM8 SGDID:S0007348, Chr X from 676886-677149, Verified ORF // sgd // 10 // --- /// YJR135W-A // cdna:known chromosome:SGD1:X:676886:677149:1 gene:YJR135W-A // ensembl // 10 // --- --- No cerevisiae_gene 1.445753467286 1.16259861536919 1.30637811095857 1.07991671856355 1.20011822426344 Max fold change below threshold 4 1.445753467286 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772487_at YLR148W.S1 Vacuolar peripheral membrane protein that promotes vesicular docking/fusion reactions in conjunction with SNARE proteins, required for vacuolar biogenesis, forms complex with Pep5p that mediates protein transport to the vacuole 1.44571488981544 233.760749816895 268.962051391602 PEP3 6895 // Golgi to endosome transport // inferred from genetic interaction /// 6904 // vesicle docking during exocytosis // inferred from mutant phenotype /// 42145 // homotypic vacuole fusion, non-autophagic // inferred from direct assay /// 45324 // late endosome to vacuole transport // inferred from genetic interaction 306 // extrinsic to vacuolar membrane // inferred from direct assay /// 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 30897 // HOPS complex // inferred from physical interaction 5515 // protein binding // inferred from mutant phenotype /// 5515 // protein binding // inferred from physical interaction 262.690124511719 220.583389282227 246.938110351563 275.233978271484 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR148W /GEN=PEP3 /DB_XREF=GI:6323177 /SEG=NC_001144:+434642,437398 /DEF=vacuolar membrane protein /NOTE=Pep3p; go_component: extrinsic to vacuolar membrane [goid GO:0000306] [evidence IDA] [pmid 1944264]; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 10944212]; go_function: protein binding [goid GO:0005515] [evidence IMP,IPI] [pmid 10978279]; go_process: Golgi to endosome transport [goid GO:0006895] [evidence IGI] [pmid 11422941]; go_process: homotypic vacuole fusion, non-autophagic [goid GO:0042145] [evidence IDA] [pmid 10944212]; go_process: late endosome to vacuole transport [goid GO:0045324] [evidence IGI] [pmid 11422941]; go_process: vesicle docking during exocytosis [goid GO:0006904] [evidence IMP] [pmid 10978279] --- --- --- --- --- --- S0004138 // PEP3 SGDID:S0004138, Chr XII from 434642-437398, Verified ORF // sgd // 11 // --- /// GENSCAN00000017934 // cdna:Genscan chromosome:SGD1:XII:434642:437398:1 // ensembl // 11 // --- /// YLR148W // cdna:known chromosome:SGD1:XII:434642:437398:1 gene:YLR148W // ensembl // 11 // --- --- No cerevisiae_gene -1.20112711149388 -1.1908880599147 1.44571488981544 -1.06378932007591 1.04775152390324 Max fold change below threshold 4 1.44571488981544 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773739_at YHR195W.S1 Nuclear envelope protein that interacts with the vacuolar membrane protein Vac8p to promote formation of nucleus-vacuole junctions during piecemeal microautophagy of the nucleus (PMN) 1.44562194302142 1696.63690185547 2216.15393066406 NVJ1 16237 // microautophagy // inferred from mutant phenotype 5635 // nuclear membrane // inferred from direct assay 5515 // protein binding // inferred from physical interaction 2289.30981445313 1667.16430664063 1726.10949707031 2142.998046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR195W /GEN=NVJ1 /DB_XREF=GI:6321989 /SEG=NC_001140:+490745,491710 /DEF=Nuclear envelope protein that interacts with the vacuolar membrane protein Vac8p to promote formation of nucleus-vacuole junctions during piecemeal microautophagy of the nucleus (PMN) /NOTE=Nvj1p; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 10888680]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 10888680]; go_process: microautophagy [goid GO:0016237] [evidence IMP] [pmid 12529432] --- --- --- --- --- --- S0001238 // NVJ1 SGDID:S0001238, Chr VIII from 490746-491711, Verified ORF // sgd // 11 // --- /// GENSCAN00000016717 // cdna:Genscan chromosome:SGD1:VIII:490746:491711:1 // ensembl // 11 // --- /// GENEFINDER00000020195 // cdna:GeneFinder chromosome:SGD1:VIII:490746:491711:1 // ensembl // 11 // --- /// YHR195W // cdna:known chromosome:SGD1:VIII:490746:491711:1 gene:YHR195W // ensembl // 11 // --- --- No cerevisiae_gene -1.44562194302142 -1.37317588034627 -1.06833957223638 -1.32628307667545 -1.06827433547664 Max fold change below threshold 4 1.44562194302142 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771602_at YGL172W.S1 Subunit of the Nsp1p-Nup57p-Nup49p-Nic96p subcomplex of the nuclear pore complex (NPC), required for nuclear export of ribosomes 1.44557337574664 1055.88412475586 1497.65008544922 NUP49 55 // ribosomal large subunit-nucleus export // inferred from mutant phenotype /// 6388 // tRNA splicing // inferred from mutant phenotype /// 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6606 // protein-nucleus import // inferred from mutant phenotype /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6999 // nuclear pore organization and biogenesis // traceable author statement 5635 // nuclear membrane // inferred from direct assay /// 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement 1389.22680664063 961.021301269531 1150.74694824219 1606.07336425781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL172W /GEN=NUP49 /DB_XREF=GI:6321266 /SEG=NC_001139:+180704,182122 /DEF=Subunit of the Nsp1p-Nup57p-Nup49p-Nic96p subcomplex of the nuclear pore complex (NPC), required for nuclear export of ribosomes /NOTE=Nup49p; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 11914276]; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus import [goid GO:0006606] [evidence IMP] [pmid 9442897]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal large subunit-nucleus export [goid GO:0000055] [evidence IMP] [pmid 9971735]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA splicing [goid GO:0006388] [evidence IMP] [pmid 8524308]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0003140 // NUP49 SGDID:S0003140, Chr VII from 180706-182124, Verified ORF // sgd // 11 // --- /// GENSCAN00000019220 // cdna:Genscan chromosome:SGD1:VII:180706:182124:1 // ensembl // 11 // --- /// GENEFINDER00000021420 // cdna:GeneFinder chromosome:SGD1:VII:180706:182124:1 // ensembl // 11 // --- /// YGL172W // cdna:known chromosome:SGD1:VII:180706:182124:1 gene:YGL172W // ensembl // 11 // --- --- No cerevisiae_gene -1.40710113054162 -1.44557337574664 1.00127067717138 -1.20723918387333 1.1560915442897 Max fold change below threshold 4 1.44557337574664 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773589_at YBL007C.S1 Cytoskeletal protein binding protein required for assembly of the cortical actin cytoskeleton; contains 3 SH3 domains; interacts with proteins regulating actin dynamics and with proteins required for endocytosis 1.44504681996483 1853.62042236328 1671.46252441406 SLA1 147 // actin cortical patch assembly // traceable author statement /// 6897 // endocytosis // inferred from mutant phenotype /// 6897 // endocytosis // inferred from physical interaction /// 7015 // actin filament organization // inferred from physical interaction /// 7015 // actin filament organization // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 7121 // bipolar bud site selection // inferred from mutant phenotype 30479 // actin cortical patch // inferred from direct assay 8092 // cytoskeletal protein binding // inferred from mutant phenotype /// 8092 // cytoskeletal protein binding // inferred from physical interaction /// 30674 // protein binding, bridging // inferred from physical interaction 1693.63403320313 1621.25305175781 2085.98779296875 1649.291015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL007C /GEN=SLA1 /DB_XREF=GI:6319464 /SEG=NC_001134:-212597,216331 /DEF=Involved in assembly of cortical actin cytoskeleton, contains 3 SH3 domains, interacts with Bee1p /NOTE=Sla1p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10652251]; go_function: cytoskeletal protein binding [goid GO:0008092] [evidence IMP,IPI] [pmid 10652251]; go_function: protein binding, bridging [goid GO:0030674] [evidence IPI] [pmid 11950888]; go_process: actin cortical patch assembly [goid GO:0000147] [evidence TAS] [pmid 10652251]; go_process: actin filament organization [goid GO:0007015] [evidence IMP,IPI] [pmid 10652251]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 10652251]; go_process: endocytosis [goid GO:0006897] [evidence IMP,IPI] [pmid 11940605]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251] --- --- --- --- --- --- S0000103 // SLA1 SGDID:S0000103, Chr II from 216369-212635, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021132 // cdna:Genscan chromosome:SGD1:II:212635:216369:-1 // ensembl // 11 // --- /// GENEFINDER00000022377 // cdna:GeneFinder chromosome:SGD1:II:212635:216369:-1 // ensembl // 11 // --- /// YBL007C // cdna:known chromosome:SGD1:II:212635:216369:-1 gene:YBL007C // ensembl // 11 // --- --- No cerevisiae_gene -1.44504681996483 -1.04464508570506 -1.02216475033262 1.23166383768492 -1.0268861087328 Max fold change below threshold 4 1.44504681996483 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773022_at YLR418C.S1 Substituent of the Paf1 complex together with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p, distinct from Srb-containing Pol II complexes; required for the expression of certain genes and modification of some histones 1.44462582297484 679.311706542969 753.163757324219 CDC73 6368 // RNA elongation from RNA polymerase II promoter // inferred from physical interaction /// 16571 // histone methylation // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 8023 // transcription elongation factor complex // inferred from physical interaction /// 16593 // Cdc73/Paf1 complex // traceable author statement 16944 // RNA polymerase II transcription elongation factor activity // inferred from physical interaction 706.440490722656 559.016296386719 799.607116699219 799.887023925781 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR418C /GEN=CDC73 /DB_XREF=GI:6323450 /SEG=NC_001144:-956910,958091 /DEF=Substituent of the Paf1 complex together with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p, distinct from Srb-containing Pol II complexes; required for the expression of certain genes and modification of some histones /NOTE=Cdc73p; go_component: Cdc73/Paf1 complex [goid GO:0016593] [evidence TAS] [pmid 12773564]; go_component: transcription elongation factor complex [goid GO:0008023] [evidence IPI] [pmid 12242279]; go_function: Pol II transcription elongation factor activity [goid GO:0016944] [evidence IPI] [pmid 12242279]; go_process: RNA elongation from Pol II promoter [goid GO:0006368] [evidence IPI] [pmid 12242279] --- --- --- --- --- --- S0004410 // CDC73 SGDID:S0004410, Chr XII from 958091-956910, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018134 // cdna:Genscan chromosome:SGD1:XII:956910:958091:-1 // ensembl // 11 // --- /// YLR418C // cdna:known chromosome:SGD1:XII:956910:958091:-1 gene:YLR418C // ensembl // 11 // --- --- No cerevisiae_gene -1.22435471663385 -1.26372074533218 1.44462582297484 1.13188177518146 1.1322779971283 Max fold change below threshold 4 1.44462582297484 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779910_at YLR130C.S1 Low-affinity zinc transporter of the plasma membrane; transcription is induced under low-zinc conditions by the Zap1p transcription factor 1.4445235900873 687.982269287109 850.261291503906 ZRT2 6831 // low-affinity zinc ion transport // inferred from sequence similarity /// 6831 // low-affinity zinc ion transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from sequence similarity /// 5886 // plasma membrane // inferred from mutant phenotype 7 // low-affinity zinc ion transporter activity // inferred from sequence similarity /// 7 // low-affinity zinc ion transporter activity // inferred from mutant phenotype 861.354675292969 596.289794921875 779.674743652344 839.167907714844 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR130C /GEN=ZRT2 /DB_XREF=GI:6323159 /SEG=NC_001144:-402795,404063 /DEF=Low-affinity zinc transporter of the plasma membrane; transcription is induced under low-zinc conditions by the Zap1p transcription factor /NOTE=Zrt2p; go_component: plasma membrane [goid GO:0005886] [evidence IMP,ISS] [pmid 8798516]; go_function: low-affinity zinc ion transporter activity [goid GO:0000007] [evidence IMP,ISS] [pmid 8798516]; go_process: low-affinity zinc ion transport [goid GO:0006831] [evidence IMP,ISS] [pmid 8798516] --- --- --- --- --- S0004120 // span:25-47,60-82,102-124,266-288,325-347,359-381,401-418 // numtm:7 S0004120 // ZRT2 SGDID:S0004120, Chr XII from 404063-402795, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017919 // cdna:Genscan chromosome:SGD1:XII:402795:404063:-1 // ensembl // 10 // --- /// GENEFINDER00000024765 // cdna:GeneFinder chromosome:SGD1:XII:402795:404063:-1 // ensembl // 10 // --- /// YLR130C // cdna:known chromosome:SGD1:XII:402795:404063:-1 gene:YLR130C // ensembl // 10 // --- --- No cerevisiae_gene 1.34410454326273 -1.4445235900873 1.04245978812303 -1.10476154615192 -1.02643900865864 Max fold change below threshold 4 1.4445235900873 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776959_at YCR002C.S1 Component of the septin ring of the mother-bud neck that is required for cytokinesis; septins recruit proteins to the neck and can act as a barrier to diffusion at the membrane, and they comprise the 10nm filaments seen with EM 1.44444758208153 1479.53955078125 1244.03112792969 CDC10 747 // conjugation with cellular fusion // traceable author statement /// 753 // cellular morphogenesis during conjugation with cellular fusion // traceable author statement /// 902 // cellular morphogenesis // traceable author statement /// 910 // cytokinesis // traceable author statement /// 7047 // cell wall organization and biogenesis // traceable author statement /// 7120 // axial bud site selection // traceable author statement /// 7121 // bipolar bud site selection // traceable author statement /// 30468 // establishment of cell polarity (sensu Fungi) // traceable author statement /// 30476 // spore wall assembly (sensu Fungi) // traceable author statement 144 // septin ring (sensu Saccharomyces) // traceable author statement 3924 // GTPase activity // inferred from direct assay /// 5200 // structural constituent of cytoskeleton // traceable author statement /// 5545 // phosphatidylinositol binding // inferred from direct assay 1188.76916503906 1445.79711914063 1513.28198242188 1299.29309082031 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR002C /GEN=CDC10 /DB_XREF=GI:6319847 /SEG=NC_001135:-117377,118345 /DEF=Component of the septin ring of the mother-bud neck that is required for cytokinesis; septins recruit proteins to the neck and can act as a barrier to diffusion at the membrane, and they comprise the 10nm filaments seen with EM /NOTE=Cdc10p; go_component: septin ring (sensu Saccharomyces) [goid GO:0000144] [evidence TAS] [pmid 8791410]; go_function: phosphatidylinositol binding [goid GO:0005545] [evidence IDA] [pmid 12665577]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence TAS] [pmid 8791410]; go_process: axial budding [goid GO:0007120] [evidence TAS] [pmid 9891811]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence TAS] [pmid 8791410]; go_process: cellular morphogenesis [goid GO:0000902] [evidence TAS] [pmid 8791410]; go_process: cellular morphogenesis during conjugation with cellular fusion [goid GO:0000753] [evidence TAS] [pmid 8791410]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence TAS] [pmid 8791410]; go_process: cytokinesis [goid GO:0000910] [evidence TAS] [pmid 8791410]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence TAS] [pmid 8791410]; go_process: polar budding [goid GO:0007121] [evidence TAS] [pmid 8791410]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence TAS] [pmid 8791410] --- --- --- --- --- --- S0000595 // CDC10 SGDID:S0000595, Chr III from 118345-117377, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022462 // cdna:Genscan chromosome:SGD1:III:117377:118345:-1 // ensembl // 11 // --- /// GENEFINDER00000023321 // cdna:GeneFinder chromosome:SGD1:III:117377:118240:-1 // ensembl // 11 // --- /// YCR002C // cdna:known chromosome:SGD1:III:117377:118345:-1 gene:YCR002C // ensembl // 11 // --- --- No cerevisiae_gene 1.44444758208153 1.21621351029333 1.11064644417351 1.27298219614583 1.09297341235934 Max fold change below threshold 4 1.44444758208153 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774898_at YCR071C.S1 Mitochondrial ribosomal protein of the small subunit 1.44385713532188 700.631622314453 764.030181884766 IMG2 6412 // protein biosynthesis // inferred from curator 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // inferred from physical interaction /// 3735 // structural constituent of ribosome // inferred from sequence similarity 687.337768554688 567.93359375 833.329650878906 840.722595214844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR071C /GEN=IMG2 /DB_XREF=GI:10383803 /SEG=NC_001135:-240098,240538 /DEF=Mitochondrial ribosomal protein of the small subunit /NOTE=Img2p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IPI,ISS] [pmid 12392552]; go_process: protein biosynthesis [goid GO:0006412] [evidence IC] [pmid 12392552] --- --- --- --- --- --- S0000667 // IMG2 SGDID:S0000667, Chr III from 240538-240098, reverse complement, Verified ORF // sgd // 10 // --- /// YCR071C // cdna:known chromosome:SGD1:III:240098:240538:-1 gene:YCR071C // ensembl // 10 // --- GENEFINDER00000023396 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.11535352741011 -1.21024319765322 1.44385713532188 1.21240194996298 1.2231578616474 Max fold change below threshold 4 1.44385713532188 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778929_at YJR105W.S1 Adenosine kinase, required for the utilization of S-adenosylmethionine (AdoMet); may be involved in recycling adenosine produced through the methyl cycle 1.4438031582407 3426.81372070313 2393.34497070313 ADO1 6144 // purine base metabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4001 // adenosine kinase activity // inferred from mutant phenotype /// 4001 // adenosine kinase activity // inferred from direct assay 2463.96264648438 3557.47705078125 3296.150390625 2322.72729492188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR105W /GEN=ADO1 /DB_XREF=GI:6322565 /SEG=NC_001142:+623494,624516 /DEF=adenosine kinase /NOTE=Ado1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: adenosine kinase activity [goid GO:0004001] [evidence IDA,IMP] [pmid 11223943]; go_process: purine base metabolism [goid GO:0006144] [evidence IMP] [pmid 11223943] --- --- --- --- --- --- S0003866 // ADO1 SGDID:S0003866, Chr X from 623494-624516, Verified ORF // sgd // 11 // --- /// GENSCAN00000024215 // cdna:Genscan chromosome:SGD1:X:623494:624516:1 // ensembl // 11 // --- /// GENEFINDER00000024276 // cdna:GeneFinder chromosome:SGD1:X:623494:624516:1 // ensembl // 11 // --- /// YJR105W // cdna:known chromosome:SGD1:X:623494:624516:1 gene:YJR105W // ensembl // 11 // --- --- No cerevisiae_gene 1.2585865926122 1.4438031582407 -1.16200151266195 1.33774365261909 -1.06080582592338 Max fold change below threshold 4 1.4438031582407 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773863_at YLR354C.S1 Transaldolase, enzyme in the non-oxidative pentose phosphate pathway; converts sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate to erythrose 4-phosphate and fructose 6-phosphate 1.44377422628877 3455.96508789063 4437.70849609375 TAL1 6098 // pentose-phosphate shunt // traceable author statement /// 6098 // pentose-phosphate shunt // inferred from mutant phenotype 5737 // cytoplasm // inferred from sequence similarity 4801 // transaldolase activity // traceable author statement 4901.3212890625 3517.13256835938 3394.79760742188 3974.095703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR354C /GEN=TAL1 /DB_XREF=GI:6323386 /SEG=NC_001144:-836349,837356 /DEF=Transaldolase, enzyme in the pentose phosphate pathway /NOTE=Tal1p; go_component: cytoplasm [goid GO:0005737] [evidence ISS] [pmid 2843500]; go_function: transaldolase activity [goid GO:0004801] [evidence TAS] [pmid 8534086]; go_process: pentose-phosphate shunt [goid GO:0006098] [evidence IMP] [pmid 8299150]; go_process: pentose-phosphate shunt [goid GO:0006098] [evidence TAS] [pmid 8534086] --- --- --- --- --- --- S0004346 // TAL1 SGDID:S0004346, Chr XII from 837356-836349, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018089 // cdna:Genscan chromosome:SGD1:XII:836349:837356:-1 // ensembl // 11 // --- /// GENEFINDER00000024878 // cdna:GeneFinder chromosome:SGD1:XII:836349:837356:-1 // ensembl // 11 // --- /// YLR354C // cdna:known chromosome:SGD1:XII:836349:837356:-1 gene:YLR354C // ensembl // 11 // --- --- No cerevisiae_gene -1.22650532394804 -1.39355602718973 -1.30931141353152 -1.44377422628877 -1.23331737713523 Max fold change below threshold 4 1.44377422628877 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773636_at YHL025W.S1 One of 11 subunits of the SWI/SNF chromatin remodeling complex involved in transcriptional regulation; functions interdependently in transcriptional activation with Snf2p and Snf5p 1.44367504330114 999.137481689453 750.328765869141 SNF6 6338 // chromatin remodeling // traceable author statement 16514 // SWI/SNF complex // traceable author statement /// 16585 // chromatin remodeling complex // traceable author statement 16251 // general RNA polymerase II transcription factor activity // traceable author statement 734.763610839844 937.515075683594 1060.75988769531 765.893920898438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL025W /GEN=SNF6 /DB_XREF=GI:6321762 /SEG=NC_001140:+54848,55846 /DEF=Involved in global regulation of transcription /NOTE=Snf6p; go_component: SWI/SNF complex [goid GO:0016514] [evidence TAS] [pmid 9726966]; go_component: nucleosome remodeling complex [goid GO:0005679] [evidence TAS] [pmid 9048886]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9048886]; go_process: chromatin remodeling [goid GO:0006338] [evidence TAS] [pmid 9048886] --- --- --- --- --- --- S0001017 // SNF6 SGDID:S0001017, Chr VIII from 54848-55846, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020162 // cdna:GeneFinder chromosome:SGD1:VIII:54848:55846:1 // ensembl // 11 // --- /// GENSCAN00000016532 // cdna:Genscan chromosome:SGD1:VIII:54938:55846:1 // ensembl // 11 // --- /// YHL025W // cdna:known chromosome:SGD1:VIII:54848:55846:1 gene:YHL025W // ensembl // 11 // --- --- No cerevisiae_gene -1.07014175079027 1.27594108071302 1.15699172487431 1.44367504330114 1.04236778958475 Max fold change below threshold 4 1.44367504330114 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772121_at YER148W.S1 TATA-binding protein, general transcription factor that interacts with other factors to form the preinitiation complex at promoters, essential for viability 1.4435291188059 2515.12475585938 2071.50305175781 SPT15 6360 // transcription from RNA polymerase I promoter // traceable author statement /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 6384 // transcription initiation from RNA polymerase III promoter // traceable author statement 120 // RNA polymerase I transcription factor complex // traceable author statement /// 126 // transcription factor TFIIIB complex // traceable author statement /// 5634 // nucleus // inferred from direct assay /// 5669 // transcription factor TFIID complex // traceable author statement /// 5669 // transcription factor TFIID complex // inferred from direct assay 3677 // DNA binding // inferred from physical interaction /// 3677 // DNA binding // traceable author statement /// 3701 // RNA polymerase I transcription factor activity // traceable author statement /// 3709 // RNA polymerase III transcription factor activity // traceable author statement /// 16251 // general RNA polymerase II transcription factor activity // traceable author statement 2066.73681640625 2477.28979492188 2552.95971679688 2076.26928710938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER148W /GEN=SPT15 /DB_XREF=GI:6320996 /SEG=NC_001137:+465298,466020 /DEF=TATA-binding protein, general transcription factor that interacts with other factors to form the preinitiation complex at promoters, essential for viability /NOTE=Spt15p; go_component: RNA polymerase I transcription factor complex [goid GO:0000120] [evidence TAS] [pmid 9932458]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9818719]; go_component: transcription factor TFIID complex [goid GO:0005669] [evidence TAS] [pmid 9118213]; go_component: transcription factor TFIIIB complex [goid GO:0000126] [evidence TAS] [pmid 9585500]; go_function: DNA binding [goid GO:0003677] [evidence IPI,TAS] [pmid 7723829]; go_function: RNA polymerase I transcription factor activity [goid GO:0003701] [evidence TAS] [pmid 9932458]; go_function: RNA polymerase III transcription factor activity [goid GO:0003709] [evidence TAS] [pmid 9585500]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9118213]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS] [pmid 9932458]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 9118213]; go_process: transcription initiation from Pol III promoter [goid GO:0006384] [evidence TAS] [pmid 9585500] --- --- --- --- --- --- S0000950 // SPT15 SGDID:S0000950, Chr V from 465298-466020, Verified ORF // sgd // 11 // --- /// GENSCAN00000016927 // cdna:Genscan chromosome:SGD1:V:465298:466020:1 // ensembl // 11 // --- /// GENEFINDER00000019595 // cdna:GeneFinder chromosome:SGD1:V:465298:466020:1 // ensembl // 11 // --- /// YER148W // cdna:known chromosome:SGD1:V:465298:466020:1 gene:YER148W // ensembl // 11 // --- YER147C-A // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene 1.4435291188059 1.19864792423329 -1.05117342804302 1.23526115978139 1.00461232926585 Max fold change below threshold 4 1.4435291188059 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774160_at YER027C.S1 One of three possible beta-subunits of the Snf1 kinase complex, allows nuclear localization of the Snf1 kinase complex in the presence of a nonfermentable carbon source; contains glycogen-binding domain 1.44324930868158 534.47966003418 670.19287109375 GAL83 6468 // protein amino acid phosphorylation // inferred from mutant phenotype /// 7155 // cell adhesion // inferred from mutant phenotype /// 7165 // signal transduction // inferred from mutant phenotype /// 30447 // filamentous growth // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 4679 // AMP-activated protein kinase activity // inferred from mutant phenotype 658.053283691406 455.952606201172 613.006713867188 682.332458496094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER027C /GEN=GAL83 /DB_XREF=GI:6320865 /SEG=NC_001137:-208978,210231 /DEF=One of three possible beta-subunits of the Snf1 kinase complex, allows nuclear localization of the Snf1 kinase complex in the presence of a nonfermentable carbon source; contains glycogen-binding domain /NOTE=Gal83p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11331606]; go_function: SNF1A/AMP-activated protein kinase activity [goid GO:0004679] [evidence IMP] [pmid 10990457]; go_process: cell adhesion [goid GO:0007155] [evidence IMP] [pmid 12556493]; go_process: filamentous growth [goid GO:0030447] [evidence IMP] [pmid 12556493]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IMP] [pmid 10990457]; go_process: signal transduction [goid GO:0007165] [evidence IMP] [pmid 10990457] --- --- --- --- --- --- S0000829 // GAL83 SGDID:S0000829, Chr V from 210231-208978, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016828 // cdna:Genscan chromosome:SGD1:V:208978:210231:-1 // ensembl // 11 // --- /// GENEFINDER00000019747 // cdna:GeneFinder chromosome:SGD1:V:208978:210231:-1 // ensembl // 11 // --- /// YER027C // cdna:known chromosome:SGD1:V:208978:210231:-1 gene:YER027C // ensembl // 11 // --- --- No cerevisiae_gene -1.19613530589717 -1.44324930868158 1.42804347614373 -1.07348462717486 1.03689545422293 Max fold change below threshold 4 1.44324930868158 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770481_at YNL307C.S1 Protein serine/threonine/tyrosine (dual-specificity) kinase involved in control of chromosome segregation and in regulating entry into meiosis; related to mammalian glycogen synthase kinases of the GSK-3 family 1.44314577284303 1266.01593017578 1255.65643310547 MCK1 70 // mitotic sister chromatid segregation // inferred from mutant phenotype /// 70 // mitotic sister chromatid segregation // inferred from genetic interaction /// 6303 // double-strand break repair via nonhomologous end-joining // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from direct assay /// 6950 // response to stress // inferred from genetic interaction /// 6950 // response to stress // inferred from mutant phenotype /// 7126 // meiosis // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype 5625 // soluble fraction // inferred from direct assay 4696 // glycogen synthase kinase 3 activity // inferred from sequence similarity /// 4712 // protein threonine/tyrosine kinase activity // inferred from direct assay 1204.08203125 1058.27783203125 1473.75402832031 1307.23083496094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL307C /GEN=MCK1 /DB_XREF=GI:6324022 /SEG=NC_001146:-56446,57573 /DEF=Disp. for mitosis, required for chr. segregation, benomyl resist., basal IME1 transcript. in mitosis, IME1 induction in meiosis & ascus mat. independ. of IME1; maybe in mitotic chr. segregation specific to CDEIII /NOTE=Mck1p; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 1701015]; go_function: glycogen synthase kinase 3 activity [goid GO:0004696] [evidence ISS] [pmid 12529445]; go_function: protein threonine/tyrosine kinase activity [goid GO:0004712] [evidence IDA] [pmid 8407952]; go_process: double-strand break repair via nonhomologous end-joining [goid GO:0006303] [evidence IMP] [pmid 12399380]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 2010083]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence IGI,IMP] [pmid 2010084]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 8407952]; go_process: response to stress [goid GO:0006950] [evidence IGI,IMP] [pmid 12529445]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 2010083] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-72 /// hanks // 3.1.2 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk2 // 3.0E-66 --- --- S0005251 // MCK1 SGDID:S0005251, Chr XIV from 57573-56446, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019796 // cdna:Genscan chromosome:SGD1:XIV:56446:57573:-1 // ensembl // 11 // --- /// GENEFINDER00000020571 // cdna:GeneFinder chromosome:SGD1:XIV:56446:57573:-1 // ensembl // 11 // --- /// YNL307C // cdna:known chromosome:SGD1:XIV:56446:57573:-1 gene:YNL307C // ensembl // 11 // --- --- No cerevisiae_gene 1.44314577284303 -1.13777497251255 1.1859688518873 1.22396480478191 1.08566592726565 Max fold change below threshold 4 1.44314577284303 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773127_at YPL152W.S1 Activator of the phosphotyrosyl phosphatase activity of PP2A; regulates G1 phase progression, the osmoresponse and microtubule dynamics; implicated in the spindle assembly check; subunit of the Tap42p-Pph21p-Rrd2p complex 1.44304711699848 476.555465698242 477.259475708008 RRD2 6970 // response to osmotic stress // inferred from mutant phenotype /// 6970 // response to osmotic stress // inferred from genetic interaction /// 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from mutant phenotype 267 // cell fraction // inferred from direct assay /// 5829 // cytosol // traceable author statement 8601 // protein phosphatase type 2A regulator activity // inferred from genetic interaction /// 8601 // protein phosphatase type 2A regulator activity // inferred from sequence similarity /// 8601 // protein phosphatase type 2A regulator activity // inferred from mutant phenotype 452.185913085938 431.177032470703 521.933898925781 502.333038330078 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL152W /GEN=RRD2 /DB_XREF=GI:6325105 /SEG=NC_001148:+265027,266103 /DEF=Resistant to Rapamycin Deletion 2 /NOTE=Rrd2p; go_component: cell fraction [goid GO:0000267] [evidence IDA] [pmid 7813481]; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 9737869]; go_function: protein phosphatase type 2A regulator activity [goid GO:0008601] [evidence IGI,ISS] [pmid 10660069]; go_process: mitotic spindle assembly (sensu Fungi) [goid GO:0030472] [evidence IMP] [pmid 11262194]; go_process: response to osmotic stress [goid GO:0006970] [evidence IGI,IMP] [pmid 10660069] --- --- --- --- --- --- S0006073 // RRD2 SGDID:S0006073, Chr XVI from 265027-266103, Verified ORF // sgd // 11 // --- /// GENSCAN00000017072 // cdna:Genscan chromosome:SGD1:XVI:265027:266103:1 // ensembl // 11 // --- /// YPL152W // cdna:known chromosome:SGD1:XVI:265027:266103:1 gene:YPL152W // ensembl // 11 // --- GENEFINDER00000020799 // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene -1.44304711699848 -1.04872448909176 -1.2320573444563 1.15424625982674 1.11089935310437 Max fold change below threshold 4 1.44304711699848 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779148_at YBR193C.S1 Member of RNA Polymerase II transcriptional regulation mediator; Stoichiometric member of mediator complex 1.44291734238602 429.744873046875 526.749160766602 MED8 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from direct assay 495.917938232422 343.691162109375 515.798583984375 557.580383300781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR193C /GEN=MED8 /DB_XREF=GI:6319670 /SEG=NC_001134:-609039,609710 /DEF=Member of RNA Polymerase II transcriptional regulation mediator /NOTE=Med8p; go_component: mediator complex [goid GO:0000119] [evidence IDA] [pmid 9420330]; go_function: RNA polymerase II transcription mediator activity [goid GO:0016455] [evidence IDA] [pmid 9420330]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IDA] [pmid 9420330] --- --- --- --- --- --- S0000397 // MED8 SGDID:S0000397, Chr II from 609748-609077, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021294 // cdna:Genscan chromosome:SGD1:II:609077:609748:-1 // ensembl // 11 // --- /// GENEFINDER00000022123 // cdna:GeneFinder chromosome:SGD1:II:609077:609748:-1 // ensembl // 11 // --- /// YBR193C // cdna:known chromosome:SGD1:II:609077:609748:-1 gene:YBR193C // ensembl // 11 // --- --- No cerevisiae_gene 1.34211946051993 -1.44291734238602 1.4327513583031 1.04008857962028 1.12434001739913 Max fold change below threshold 4 1.44291734238602 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777278_at YIL051C.S1 Mitochondrial protein involved in maintenance of the mitochondrial genome 1.44239042290053 3324.6513671875 2862.00463867188 MMF1 2 // mitochondrial genome maintenance // inferred from mutant phenotype /// 9097 // isoleucine biosynthesis // inferred from mutant phenotype 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay /// 5759 // mitochondrial matrix // inferred from direct assay --- 2854.66943359375 3290.10375976563 3359.19897460938 2869.33984375 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL051C /GEN=MMF1 /DB_XREF=GI:6322138 /SEG=NC_001141:-257842,258279 /DEF=Maintenance of Mitochondrial Function /NOTE=Mmf1p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 11003673]; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 12185840]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: isoleucine biosynthesis [goid GO:0009097] [evidence IMP] [pmid 11442631]; go_process: mitochondrial genome maintenance [goid GO:0000002] [evidence IMP] [pmid 11003673] --- --- --- --- --- --- S0001313 // MMF1 SGDID:S0001313, Chr IX from 258279-257842, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016438 // cdna:Genscan chromosome:SGD1:IX:257842:258279:-1 // ensembl // 11 // --- /// GENEFINDER00000019057 // cdna:GeneFinder chromosome:SGD1:IX:257842:258279:-1 // ensembl // 11 // --- /// YIL051C // cdna:known chromosome:SGD1:IX:257842:258279:-1 gene:YIL051C // ensembl // 11 // --- --- No cerevisiae_gene 1.44239042290053 1.15253406263005 1.0145302301619 1.17673834142697 1.00513909245799 Max fold change below threshold 4 1.44239042290053 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777753_at YER067W.S1 Hypothetical protein 1.44233881117096 7643.63842773438 5807.02465820313 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 6657.74609375 9602.7255859375 5684.55126953125 4956.30322265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER067W /GEN=ICL1 /DB_XREF=GI:6320910 /SEG=NC_001137:+292064,292549 /DEF=Hypothetical ORF /NOTE=Yer067wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000869 // YER067W SGDID:S0000869, Chr V from 292064-292549, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000016861 // cdna:Genscan chromosome:SGD1:V:292064:292549:1 // ensembl // 10 // --- /// GENEFINDER00000019752 // cdna:GeneFinder chromosome:SGD1:V:292064:292549:1 // ensembl // 10 // --- /// YER067W // cdna:known chromosome:SGD1:V:292064:292549:1 gene:YER067W // ensembl // 10 // --- YER066C-A // ensembl // 2 // Negative Strand Matching Probes /// YER067C-A // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene -1.13271700857779 1.44233881117096 -1.28726868452049 -1.17119993787988 -1.34328869616292 Max fold change below threshold 4 1.44233881117096 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770140_x_at YBL108C-A.S1 Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth /// Hypothetical protein /// Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 1.44233177856716 1181.58596801758 1022.39340209961 PAU4 /// PAU6 /// PAU1 /// PAU5 /// PAU2 /// DAN3 --- 9277 // cell wall (sensu Fungi) // inferred from sequence similarity --- 1025.90319824219 1360.5078125 1002.66412353516 1018.88360595703 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL108C-A /DB_XREF=GI:13129151 /SEG=NC_001134:-7605,7733 /DEF=Hypothetical ORF identified by homology. See FEBS Letters [2000] 487:31-36. /NOTE=Ybl108c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002142 // YAL068C SGDID:S0002142, Chr I from 2169-1807, reverse complement, Uncharacterized ORF // sgd // 9 // --- /// S0007592 // YBL108C-A SGDID:S0007592, Chr II from 7733-7605, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0002950 // YDR542W SGDID:S0002950, Chr IV from 1523232-1523594, Uncharacterized ORF // sgd // 10 // --- /// S0003230 // YGL261C SGDID:S0003230, Chr VII from 6652-6290, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0003526 // YGR294W SGDID:S0003526, Chr VII from 1080312-1080674, Uncharacterized ORF // sgd // 11 // --- /// S0001038 // YHL046C SGDID:S0001038, Chr VIII from 12283-11921, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018205 // cdna:GeneFinder chromosome:SGD1:I:1807:2169:-1 // ensembl // 9 // --- /// GENSCAN00000020319 // cdna:Genscan chromosome:SGD1:I:1807:2169:-1 // ensembl // 9 // --- /// GENEFINDER00000022249 // cdna:GeneFinder chromosome:SGD1:II:7605:7814:-1 // ensembl // 11 // --- /// GENEFINDER00000023792 // cdna:GeneFinder chromosome:SGD1:IV:1523232:1523594:1 // ensembl // 10 // --- /// GENSCAN00000025521 // cdna:Genscan chromosome:SGD1:IV:1523232:1523594:1 // ensembl // 10 // --- /// GENSCAN00000019154 // cdna:Genscan chromosome:SGD1:VII:6290:6652:-1 // ensembl // 11 // --- /// GENEFINDER00000021409 // cdna:GeneFinder chromosome:SGD1:VII:6290:6652:-1 // ensembl // 11 // --- /// GENSCAN00000019567 // cdna:Genscan chromosome:SGD1:VII:1080312:1080674:1 // ensembl // 11 // --- /// GENEFINDER00000021587 // cdna:GeneFinder chromosome:SGD1:VII:1080312:1080674:1 // ensembl // 11 // --- /// GENSCAN00000016515 // cdna:Genscan chromosome:SGD1:VIII:11921:12283:-1 // ensembl // 11 // --- /// GENEFINDER00000020211 // cdna:GeneFinder chromosome:SGD1:VIII:11921:12283:-1 // ensembl // 11 // --- /// YAL068C // cdna:known chromosome:SGD1:I:1807:2169:-1 gene:YAL068C // ensembl // 9 // --- /// YBL108C-A // cdna:known chromosome:SGD1:II:7605:7733:-1 gene:YBL108C-A // ensembl // 11 // --- /// YDR542W // cdna:known chromosome:SGD1:IV:1523232:1523594:1 gene:YDR542W // ensembl // 10 // --- /// YGL261C // cdna:known chromosome:SGD1:VII:6290:6652:-1 gene:YGL261C // ensembl // 11 // --- /// YGR294W // cdna:known chromosome:SGD1:VII:1080312:1080674:1 gene:YGR294W // ensembl // 11 // --- /// YHL046C // cdna:known chromosome:SGD1:VIII:11921:12283:-1 gene:YHL046C // ensembl // 11 // --- S0000505 // sgd // 1 // Cross Hyb Matching Probes /// S0000775 // sgd // 3 // Cross Hyb Matching Probes /// S0001438 // sgd // 8 // Cross Hyb Matching Probes /// S0003759 // sgd // 8 // Cross Hyb Matching Probes /// S0003987 // sgd // 2 // Cross Hyb Matching Probes /// S0004453 // sgd // 3 // Cross Hyb Matching Probes /// S0005359 // sgd // 2 // Cross Hyb Matching Probes /// GENSCAN00000021379 // ensembl // 1 // Cross Hyb Matching Probes /// GENEFINDER00000022178 // ensembl // 1 // Cross Hyb Matching Probes /// GENEFINDER00000023397 // ensembl // 1 // Cross Hyb Matching Probes /// GENSCAN00000016343 // ensembl // 8 // Cross Hyb Matching Probes /// GENEFINDER00000019046 // ensembl // 8 // Cross Hyb Matching Probes /// GENSCAN00000016764 // ensembl // 3 // Cross Hyb Matching Probes /// GENEFINDER00000019744 // ensembl // 3 // Cross Hyb Matching Probes /// GENSCAN00000023970 // ensembl // 8 // Cross Hyb Matching Probes /// GENEFINDER00000024482 // ensembl // 8 // Cross Hyb Matching Probes /// GENSCAN00000017642 // ensembl // 2 // Cross Hyb Matching Probes /// GENEFINDER00000024911 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000018169 // ensembl // 3 // Cross Hyb Matching Probes /// GENEFINDER00000024597 // ensembl // 3 // Cross Hyb Matching Probes /// GENSCAN00000020101 // ensembl // 2 // Cross Hyb Matching Probes /// GENEFINDER00000020637 // ensembl // 2 // Cross Hyb Matching Probes /// YBR301W // ensembl // 1 // Cross Hyb Matching Probes /// YIL176C // ensembl // 8 // Cross Hyb Matching Probes /// YEL049W // ensembl // 3 // Cross Hyb Matching Probes /// YJL223C // ensembl // 8 // Cross Hyb Matching Probes /// YLL064C // ensembl // 2 // Cross Hyb Matching Probes /// YLR461W // ensembl // 3 // Cross Hyb Matching Probes /// YNR076W // ensembl // 2 // Cross Hyb Matching Probes No cerevisiae_gene -1.44233177856716 1.32615612743106 1.03912579890124 -1.02317732744351 -1.00688949379901 Max fold change below threshold 4 1.44233177856716 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769345_at YOR037W.S1 Mitochondrial protein required for normal abundance of mitochondrial cytochrome c (Cyc1p) and for mitochondrial osmotic stability; may be involved in regulating the activity of cytochrome c heme lyase (Cyc3p); potential Cdc28p substrate 1.4419412213694 491.474197387695 466.688140869141 CYC2 7006 // mitochondrial membrane organization and biogenesis // inferred from mutant phenotype /// 18063 // cytochrome c-heme linkage // inferred from genetic interaction /// 45041 // mitochondrial intermembrane space protein import // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay --- 430.767883300781 471.101013183594 511.847381591797 502.6083984375 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR037W /GEN=CYC2 /DB_XREF=GI:37362694 /SEG=NC_001147:+401554,402654 /DEF=Mitochondrial protein required for normal abundance of mitochondrial cytochrome c (Cyc1p) and for mitochondrial osmotic stability; may be involved in regulating the activity of cytochrome c heme lyase (Cyc3p); potential Cdc28p substrate /NOTE=Cyc2p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cytochrome c-heme linkage [goid GO:0018063] [evidence IGI] [pmid 14514677]; go_process: mitochondrial intermembrane space protein import [goid GO:0045041] [evidence IMP] [pmid 8413243]; go_process: mitochondrial membrane organization and biogenesis [goid GO:0007006] [evidence IMP] [pmid 11488609] --- --- --- --- --- --- S0005563 // CYC2 SGDID:S0005563, Chr XV from 401554-402654, Verified ORF // sgd // 11 // --- /// GENSCAN00000017492 // cdna:Genscan chromosome:SGD1:XV:401848:402654:1 // ensembl // 11 // --- /// YOR037W // cdna:known chromosome:SGD1:XV:401554:402654:1 gene:YOR037W // ensembl // 11 // --- --- No cerevisiae_gene 1.4419412213694 1.093630772967 1.16964773656464 1.18822085265443 1.16677314609956 Max fold change below threshold 4 1.4419412213694 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772976_at YBR164C.S1 Soluble GTPase with a role in regulation of membrane traffic; regulates potassium influx; G protein of the Ras superfamily, similar to ADP-ribosylation factor 1.44187289345906 955.955932617188 1028.3092956543 ARL1 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 16192 // vesicle-mediated transport // inferred from genetic interaction /// 16192 // vesicle-mediated transport // inferred from mutant phenotype 5625 // soluble fraction // inferred from direct assay /// 5794 // Golgi apparatus // inferred from direct assay 3924 // GTPase activity // inferred from sequence similarity /// 3924 // GTPase activity // inferred from direct assay 1019.65338134766 912.371337890625 999.54052734375 1036.96520996094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR164C /GEN=ARL1 /DB_XREF=GI:6319641 /SEG=NC_001134:-567832,568383 /DEF=Encodes a regulator of membrane traffic. Hydrolyzes GTP; myristylated; in soluble fraction. Part of the carboxypeptidase Y pathway. /NOTE=Arl1p; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 9388248]; go_function: GTPase activity [goid GO:0003924] [evidence IDA,ISS] [pmid 9388248]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 12210899]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IGI,IMP] [pmid 11840166] --- --- --- --- --- --- S0000368 // ARL1 SGDID:S0000368, Chr II from 568421-567870, reverse complement, Verified ORF // sgd // 11 // --- /// U89332 // Saccharomyces cerevisiae ADP-ribosylation factor-like protein 1 mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000021272 // cdna:Genscan chromosome:SGD1:II:567870:568421:-1 // ensembl // 11 // --- /// GENEFINDER00000022278 // cdna:GeneFinder chromosome:SGD1:II:567870:568421:-1 // ensembl // 11 // --- /// YBR164C // cdna:known chromosome:SGD1:II:567870:568421:-1 gene:YBR164C // ensembl // 11 // --- --- No cerevisiae_gene 1.44187289345906 -1.11758594226016 -1.00081072493295 -1.02012209955844 1.01697815054602 Max fold change below threshold 4 1.44187289345906 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779006_at YMR150C.S1 Catalytic subunit of the mitochondrial inner membrane peptidase complex, required for maturation of mitochondrial proteins of the intermembrane space; complex contains Imp1p and Imp2p (both catalytic subunits), and Som1p 1.44158938341432 722.573638916016 878.459747314453 IMP1 6627 // mitochondrial protein processing // inferred from direct assay 42720 // mitochondrial inner membrane peptidase complex // inferred from direct assay 4244 // mitochondrial inner membrane peptidase activity // inferred from direct assay /// 8233 // peptidase activity // inferred from direct assay 828.891723632813 673.974182128906 771.173095703125 928.027770996094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR150C /GEN=IMP1 /DB_XREF=GI:6323800 /SEG=NC_001145:-561955,562527 /DEF=Catalytic subunit of the mitochondrial inner membrane peptidase complex, required for maturation of mitochondrial proteins of the intermembrane space; complex contains Imp1p and Imp2p (both catalytic subunits), and Som1p /NOTE=Imp1p; go_component: mitochondrial inner membrane peptidase complex [goid GO:0042720] [evidence IDA] [pmid 8266095]; go_function: peptidase activity [goid GO:0008233] [evidence IDA] [pmid 1991446]; go_process: mitochondrial processing [goid GO:0006627] [evidence IDA] [pmid 1991446] --- --- --- --- --- --- S0004758 // IMP1 SGDID:S0004758, Chr XIII from 562527-561955, reverse complement, Verified ORF // sgd // 10 // --- /// YMR150C // cdna:known chromosome:SGD1:XIII:561955:562527:-1 gene:YMR150C // ensembl // 10 // --- GENSCAN00000018839 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.17552227643712 -1.22985678919415 1.44158938341432 -1.07484523027487 1.11960072050037 Max fold change below threshold 4 1.44158938341432 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773282_at YJL014W.S1 Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo 1.44153233381947 1088.88336181641 1016.0400390625 CCT3 6457 // protein folding // traceable author statement /// 7010 // cytoskeleton organization and biogenesis // traceable author statement 5737 // cytoplasm // traceable author statement /// 5832 // chaperonin-containing T-complex // traceable author statement /// 5832 // chaperonin-containing T-complex // inferred from physical interaction /// 5856 // cytoskeleton // traceable author statement 51082 // unfolded protein binding // traceable author statement 977.876098632813 768.126708984375 1409.64001464844 1054.20397949219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL014W /GEN=CCT3 /DB_XREF=GI:6322446 /SEG=NC_001142:+407473,409077 /DEF=Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo /NOTE=Cct3p; go_component: chaperonin-containing T-complex [goid GO:0005832] [evidence TAS] [pmid 8771707]; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 8771707]; go_component: cytoskeleton [goid GO:0005856] [evidence TAS] [pmid 8771707]; go_function: chaperone activity [goid GO:0003754] [evidence TAS] [pmid 8771707]; go_process: cytoskeleton organization and biogenesis [goid GO:0007010] [evidence TAS] [pmid 8771707]; go_process: protein folding [goid GO:0006457] [evidence TAS] [pmid 8771707] --- --- --- --- scop // a.2.5.Prefoldin // All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin // 0.119999997317791 --- S0003551 // CCT3 SGDID:S0003551, Chr X from 407473-409077, Verified ORF // sgd // 11 // --- /// GENSCAN00000024124 // cdna:Genscan chromosome:SGD1:X:407473:409077:1 // ensembl // 11 // --- /// GENEFINDER00000024409 // cdna:GeneFinder chromosome:SGD1:X:407473:409077:1 // ensembl // 11 // --- /// YJL014W // cdna:known chromosome:SGD1:X:407473:409077:1 gene:YJL014W // ensembl // 11 // --- --- No cerevisiae_gene -1.04548913965919 -1.27306613244288 -1.10464976138522 1.44153233381947 1.07805475659553 Max fold change below threshold 4 1.44153233381947 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773982_at YPL210C.S1 Core component of the signal recognition particle (SRP) ribonucleoprotein (RNP) complex that functions in targeting nascent secretory proteins to the endoplasmic reticulum (ER) membrane 1.44139406390375 915.278930664063 919.618133544922 SRP72 6617 // SRP-dependent cotranslational protein-membrane targeting, signal sequence recognition // inferred from curator /// 45047 // protein-ER targeting // inferred from physical interaction 5786 // signal recognition particle (sensu Eukaryota) // inferred from direct assay 5048 // signal sequence binding // inferred from physical interaction 898.893859863281 921.3271484375 909.230712890625 940.342407226563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL210C /GEN=SRP72 /DB_XREF=GI:37362700 /SEG=NC_001148:-154289,156211 /DEF=part of the signal recognition particle (SRP) ribonucleoprotein (RNP) complex that functions in protein targeting to the endoplasmic reticulum (ER) membrane /NOTE=Srp72p; go_component: signal recognition particle [goid GO:0005786] [evidence IDA] [pmid 7925282]; go_function: signal sequence binding [goid GO:0005048] [evidence IPI] [pmid 7925282]; go_process: protein-ER targeting [goid GO:0045047] [evidence IPI] [pmid 7925282] --- --- --- --- --- --- S0006131 // SRP72 SGDID:S0006131, Chr XVI from 156211-154289, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017026 // cdna:Genscan chromosome:SGD1:XVI:154289:156211:-1 // ensembl // 11 // --- /// YPL210C // cdna:known chromosome:SGD1:XVI:154289:156211:-1 gene:YPL210C // ensembl // 11 // --- --- No cerevisiae_gene 1.34355667301331 1.02495654890515 -1.44139406390375 1.0114995256825 1.04611061351513 Max fold change below threshold 4 1.44139406390375 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778683_at YNL042W-B.S1 Identified by expression profiling and mass spectrometry 1.44122861550737 26.2245216369629 16.5440526008606 --- --- --- --- 18.9268817901611 27.2779636383057 25.1710796356201 14.1612234115601 0.002685546875 0.000244141003349796 0.00122069998178631 0.0239257998764515 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL042W-B /GEN=YIP3 /DB_XREF=GI:33438869 /SEG=NC_001146:+547111,547368 /DEF=Identified by expression profiling and mass spectrometry /NOTE=Ynl042w-bp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028850 // YNL042W-B SGDID:S0028850, Chr XIV from 547112-547369, Uncharacterized ORF // sgd // 11 // --- /// YNL042W-B // cdna:known chromosome:SGD1:XIV:547112:547369:1 gene:YNL042W-B // ensembl // 11 // --- --- No cerevisiae_gene -1.1656512926475 1.44122861550737 -1.24449733279548 1.32991159952745 -1.33652871931325 Max fold change below threshold 4 1.44122861550737 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1770512_at YKR050W.S1 Component of the Trk1p-Trk2p potassium transport system 1.44118652308721 646.167999267578 994.571746826172 TRK2 30007 // potassium ion homeostasis // inferred from direct assay 5886 // plasma membrane // traceable author statement 15079 // potassium ion transporter activity // inferred from direct assay /// 15079 // potassium ion transporter activity // inferred from sequence similarity 925.737243652344 649.9921875 642.343811035156 1063.40625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR050W /GEN=TRK2 /DB_XREF=GI:6322903 /SEG=NC_001143:+527457,530126 /DEF=membrane protein; low affinity potassium transport /NOTE=Trk2p; go_component: plasma membrane [goid GO:0005886] [evidence TAS] [pmid 2072919]; go_function: potassium ion transporter activity [goid GO:0015079] [evidence IDA,ISS] [pmid 2072919]; go_process: potassium ion homeostasis [goid GO:0030007] [evidence IDA] [pmid 2072919] --- --- --- --- scop // a.4.1.AraC type transcriptional activator // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; AraC type transcriptional activator // 1.0 S0001758 // span:48-70,80-97,110-132,465-487,500-522,537-559,593-615,659-678,775-797,802-821 // numtm:10 S0001758 // TRK2 SGDID:S0001758, Chr XI from 527457-530126, Verified ORF // sgd // 11 // --- /// GENSCAN00000018459 // cdna:Genscan chromosome:SGD1:XI:527457:530126:1 // ensembl // 11 // --- /// GENEFINDER00000023006 // cdna:GeneFinder chromosome:SGD1:XI:527457:530126:1 // ensembl // 11 // --- /// YKR050W // cdna:known chromosome:SGD1:XI:527457:530126:1 gene:YKR050W // ensembl // 11 // --- --- No cerevisiae_gene -1.3262101237103 -1.42422826220868 1.24441424200082 -1.44118652308721 1.14871283108856 Max fold change below threshold 4 1.44118652308721 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777059_at YJL006C.S1 Beta subunit of C-terminal domain kinase I (CTDK-I), which phosphorylates the C-terminal repeated domain of the RNA polymerase II large subunit (Rpo21p) to affect both transcription and pre-mRNA 3' end processing; has similarity to cyclins 1.44116941338987 744.047637939453 897.490386962891 CTK2 6357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 6468 // protein amino acid phosphorylation // traceable author statement 5634 // nucleus // inferred from physical interaction 16538 // cyclin-dependent protein kinase regulator activity // traceable author statement 851.228332519531 897.444152832031 590.651123046875 943.75244140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL006C /GEN=CTK2 /DB_XREF=GI:6322454 /SEG=NC_001142:-423053,424024 /DEF=Beta subunit of C-terminal domain kinase I (CTDK-I), which phosphorylates the C-terminal repeated domain of the RNA polymerase II large subunit (Rpo21p) to affect both transcription and pre-mRNA 3' end processing; has similarity to cyclins /NOTE=Ctk2p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 7565723]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS] [pmid 1820212]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 1820212]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence TAS] [pmid 9110987] --- --- --- --- --- --- S0003543 // CTK2 SGDID:S0003543, Chr X from 424024-423053, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024504 // cdna:GeneFinder chromosome:SGD1:X:423053:424024:-1 // ensembl // 11 // --- /// YJL006C // cdna:known chromosome:SGD1:X:423053:424024:-1 gene:YJL006C // ensembl // 11 // --- --- No cerevisiae_gene 1.04518967986649 1.05429309451638 -1.33581556822656 -1.44116941338987 1.10869481824325 Max fold change below threshold 4 1.44116941338987 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777808_at YBR045C.S1 Meiosis-specific protein proposed to be a regulatory subunit of the protein phosphatase Glc7p, required for spore wall formation and proper septin organization 1.4409775728598 106.098052978516 138.833061218262 GIP1 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 164 // protein phosphatase type 1 complex // inferred from physical interaction /// 5628 // prospore membrane // inferred from direct assay 8157 // protein phosphatase 1 binding // inferred from mutant phenotype /// 8157 // protein phosphatase 1 binding // inferred from physical interaction 124.091613769531 108.017913818359 104.178192138672 153.574508666992 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR045C /GEN=GIP1 /DB_XREF=GI:6319519 /SEG=NC_001134:-328331,330052 /DEF=Developmentally-regulated protein phosphatase 1 (Glc7) interacting protein which is required for spore formation. /NOTE=Gip1p; go_component: prospore membrane [goid GO:0005628] [evidence IDA] [pmid 11724821]; go_component: protein phosphatase type 1 complex [goid GO:0000164] [evidence IPI] [pmid 9584086]; go_function: protein phosphatase 1 binding [goid GO:0008157] [evidence IMP,IPI] [pmid 9584086]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence IMP] [pmid 11724821] --- --- --- --- --- --- S0000249 // GIP1 SGDID:S0000249, Chr II from 330090-328369, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021176 // cdna:Genscan chromosome:SGD1:II:328369:330090:-1 // ensembl // 11 // --- /// GENEFINDER00000022106 // cdna:GeneFinder chromosome:SGD1:II:328369:330090:-1 // ensembl // 11 // --- /// YBR045C // cdna:known chromosome:SGD1:II:328369:330090:-1 gene:YBR045C // ensembl // 11 // --- --- No cerevisiae_gene 1.4409775728598 -1.14880587286847 1.35025308430356 -1.19114769820878 1.23758974520404 Max fold change below threshold 4 1.4409775728598 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775357_at YOR283W.S1 Hypothetical protein 1.44092645858201 1020.67492675781 1089.72338867188 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1058.48132324219 922.175903320313 1119.17395019531 1120.96545410156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR283W /GEN=PLP2 /DB_XREF=GI:6324857 /SEG=NC_001147:+847450,848142 /DEF=Hypothetical ORF /NOTE=Yor283wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005809 // YOR283W SGDID:S0005809, Chr XV from 847450-848142, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022681 // cdna:GeneFinder chromosome:SGD1:XV:847450:848142:1 // ensembl // 11 // --- /// YOR283W // cdna:known chromosome:SGD1:XV:847450:848142:1 gene:YOR283W // ensembl // 11 // --- --- No cerevisiae_gene 1.25295340983515 -1.1478084814742 -1.44092645858201 1.05733934611829 1.05903186904421 Max fold change below threshold 4 1.44092645858201 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777380_at SPBC1703.14c.S1 --- 1.44084633233659 --- --- --- --- 0.277180939912796 0.326930284500122 0.251979142427444 0.290250986814499 0.995850026607513 0.991943001747131 0.953857004642487 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1703.14c /GEN=top1 /DEF=DNA topoisomerase activity --- --- --- --- --- --- SPBC1703.14c // |top1||DNA topoisomerase activity|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.29415719754091 1.17948328122048 1.44084633233659 -1.10001541096842 1.04715348359023 Max fold change below threshold 0 1.44084633233659 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779081_at YKL049C.S1 Centromere protein that resembles histones, required for proper kinetochore function; homolog of human CENP-A 1.44035376863186 522.583724975586 460.219360351563 CSE4 70 // mitotic sister chromatid segregation // inferred from mutant phenotype 776 // kinetochore // inferred from genetic interaction /// 780 // condensed nuclear chromosome, pericentric region // inferred from genetic interaction /// 788 // nuclear nucleosome // inferred from direct assay 19237 // centromeric DNA binding // inferred from direct assay 475.960876464844 476.166412353516 569.001037597656 444.477844238281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL049C /GEN=CSE4 /DB_XREF=GI:27808712 /SEG=NC_001143:-345720,346409 /DEF=Centromere protein that resembles histones, required for proper kinetochore function; homolog of human CENP-A /NOTE=Cse4p; go_component: condensed nuclear chromosome, pericentric region [goid GO:0000780] [evidence IGI] [pmid 11063678]; go_component: nuclear nucleosome [goid GO:0000788] [evidence IDA] [pmid 11063678]; go_function: centromeric DNA binding [goid GO:0019237] [evidence IDA] [pmid 11063678]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence IMP] [pmid 7698647] --- --- --- --- --- --- S0001532 // CSE4 SGDID:S0001532, Chr XI from 346409-345720, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018380 // cdna:Genscan chromosome:SGD1:XI:345720:346409:-1 // ensembl // 10 // --- /// YKL049C // cdna:known chromosome:SGD1:XI:345720:346409:-1 gene:YKL049C // ensembl // 10 // --- --- No cerevisiae_gene -1.44035376863186 1.00043183357884 1.12315034489621 1.19547859022334 -1.07083149955543 Max fold change below threshold 4 1.44035376863186 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778487_at YJR063W.S1 RNA polymerase I subunit A12.2; contains two zinc binding domains, and the N terminal domain is responsible for anchoring to the RNA pol I complex 1.44004194446269 900.095764160156 927.372619628906 RPA12 6360 // transcription from RNA polymerase I promoter // traceable author statement 5736 // DNA-directed RNA polymerase I complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 936.4130859375 989.791259765625 810.400268554688 918.332153320313 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR063W /GEN=RPA12 /DB_XREF=GI:6322523 /SEG=NC_001142:+555109,555486 /DEF=RNA polymerase I subunit A12.2; contains two zinc binding domains, and the N terminal domain is responsible for anchoring to the RNA pol I complex /NOTE=Rpa12p; go_component: DNA-directed RNA polymerase I complex [goid GO:0005736] [evidence TAS] [pmid 8246845]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 8246845]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS] --- --- --- --- --- --- S0003824 // RPA12 SGDID:S0003824, Chr X from 555109-555486, Verified ORF // sgd // 11 // --- /// GENSCAN00000024183 // cdna:Genscan chromosome:SGD1:X:555109:555486:1 // ensembl // 11 // --- /// GENEFINDER00000024448 // cdna:GeneFinder chromosome:SGD1:X:555109:555486:1 // ensembl // 11 // --- /// YJR063W // cdna:known chromosome:SGD1:X:555109:555486:1 gene:YJR063W // ensembl // 11 // --- --- No cerevisiae_gene 1.44004194446269 1.05700280637865 -1.31628154345335 -1.15549454050349 -1.01968888114373 Max fold change below threshold 4 1.44004194446269 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772288_at YOR038C.S1 Non-essential transcriptional corepressor involved in the cell cycle-regulated transcription of histone H2A, H2B, H3, and H4 genes; recruits Swi-Snf complexes to histone gene promoters; promotes heterochromatic gene silencing with Asf1p 1.44000162309056 602.002960205078 871.092010498047 HIR2 6357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from direct assay 3714 // transcription corepressor activity // inferred from direct assay 853.407592773438 592.643493652344 611.362426757813 888.776428222656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR038C /GEN=HIR2 /DB_XREF=GI:6324612 /SEG=NC_001147:-402760,405387 /DEF=Non-essential transcriptional corepressor involved in the cell cycle-regulated transcription of histone H2A, H2B, H3, and H4 genes; recruits Swi-Snf complexes to histone gene promoters; promotes heterochromatic gene silencing with Asf1p /NOTE=Hir2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8417331]; go_function: transcription corepressor activity [goid GO:0003714] [evidence IDA] [pmid 9001207]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IDA] [pmid 9001207] --- --- --- --- --- --- S0005564 // HIR2 SGDID:S0005564, Chr XV from 405387-402760, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017493 // cdna:Genscan chromosome:SGD1:XV:402760:405387:-1 // ensembl // 11 // --- /// GENEFINDER00000022667 // cdna:GeneFinder chromosome:SGD1:XV:402760:405285:-1 // ensembl // 11 // --- /// YOR038C // cdna:known chromosome:SGD1:XV:402760:405387:-1 gene:YOR038C // ensembl // 11 // --- --- No cerevisiae_gene -1.14778945806135 -1.44000162309056 -1.0368655939662 -1.39591109204935 1.04144424744837 Max fold change below threshold 4 1.44000162309056 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775368_at YGL223C.S1 Essential component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tethering complex that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments 1.43966596702667 405.807815551758 578.156616210938 COG1 301 // retrograde transport, vesicle recycling within Golgi // inferred from mutant phenotype /// 6891 // intra-Golgi transport // inferred from physical interaction /// 6891 // intra-Golgi transport // inferred from genetic interaction 17119 // Golgi transport complex // inferred from physical interaction --- 564.691223144531 394.520629882813 417.095001220703 591.622009277344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL223C /GEN=COG1 /DB_XREF=GI:6321215 /SEG=NC_001139:-79110,80363 /DEF=Conserved Oligomeric Golgi complex 1 Complexed with Cog8p; interacts with Cog2p /NOTE=Cog1p; go_component: Golgi transport complex [goid GO:0017119] [evidence IPI] [pmid 11703943]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: intra-Golgi transport [goid GO:0006891] [evidence IGI,IPI] [pmid 11703943]; go_process: retrograde transport, vesicle recycling within Golgi [goid GO:0000301] [evidence IMP] [pmid 11703943] --- --- --- --- --- --- S0003191 // COG1 SGDID:S0003191, Chr VII from 80364-79111, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019183 // cdna:Genscan chromosome:SGD1:VII:79111:80364:-1 // ensembl // 11 // --- /// YGL223C // cdna:known chromosome:SGD1:VII:79111:80364:-1 gene:YGL223C // ensembl // 11 // --- --- No cerevisiae_gene 1.43966596702667 -1.43133509472563 -1.02151227169337 -1.35386715614395 1.04769117179269 Max fold change below threshold 4 1.43966596702667 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773607_at YJL141C.S1 Serine-threonine protein kinase that is part of a glucose-sensing system involved in growth control in response to glucose availability; translocates from the cytoplasm to the nucleus and phosphorylates Pop2p in response to a glucose signal 1.43953662193476 4184.20629882813 3373.72485351563 YAK1 6468 // protein amino acid phosphorylation // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4672 // protein kinase activity // inferred from direct assay 3611.97705078125 5199.5732421875 3168.83935546875 3135.47265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL141C /GEN=YAK1 /DB_XREF=GI:6322320 /SEG=NC_001142:-147885,150308 /DEF=Serine-threonine protein kinase /NOTE=Yak1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11358866]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11358866]; go_function: protein kinase activity [goid GO:0004672] [evidence IDA] [pmid 2072907]; go_process: cell growth and/or maintenance [goid GO:0008151] [evidence IMP] [pmid 11358866]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 2072907] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-58 /// hanks // 3.1.7 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; PCTAIRE1 // 1.0E-58 --- --- S0003677 // YAK1 SGDID:S0003677, Chr X from 150308-147885, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024030 // cdna:Genscan chromosome:SGD1:X:147885:149612:-1 // ensembl // 11 // --- /// GENEFINDER00000024478 // cdna:GeneFinder chromosome:SGD1:X:147885:149006:-1 // ensembl // 11 // --- /// YJL141C // cdna:known chromosome:SGD1:X:147885:150308:-1 gene:YJL141C // ensembl // 11 // --- YJL142C // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.30635876328276 1.43953662193476 -1.14800363024288 -1.13984227207597 -1.15197210971731 Max fold change below threshold 4 1.43953662193476 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769870_at YLR299W.S1 Gamma-glutamyltranspeptidase, major glutathione-degrading enzyme; expression induced mainly by nitrogen starvation 1.43951805657238 1306.44702148438 1176.88726806641 ECM38 6751 // glutathione catabolism // traceable author statement 5622 // intracellular // traceable author statement 3810 // protein-glutamine gamma-glutamyltransferase activity // inferred from sequence similarity 1134.22082519531 1153.75134277344 1459.14270019531 1219.5537109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR299W /GEN=ECM38 /DB_XREF=GI:6323330 /SEG=NC_001144:+726071,728053 /DEF=Gamma-glutamyltranspeptidase, major glutathione-degrading enzyme; expression induced mainly by nitrogen starvation /NOTE=Ecm38p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 12406228]; go_function: protein-glutamine gamma-glutamyltransferase activity [goid GO:0003810] [evidence ISS] [pmid 9348527]; go_process: glutathione catabolism [goid GO:0006751] [evidence TAS] [pmid 12620619] --- --- --- --- scop // a.140.1.LEM domain // All alpha proteins; LEM/SAP HeH motif; LEM domain; LEM domain // 9.89999961853027 S0004290 // span:12-34 // numtm:1 S0004290 // ECM38 SGDID:S0004290, Chr XII from 726071-728053, Verified ORF // sgd // 11 // --- /// GENSCAN00000018051 // cdna:Genscan chromosome:SGD1:XII:726167:728053:1 // ensembl // 11 // --- /// GENEFINDER00000024704 // cdna:GeneFinder chromosome:SGD1:XII:726167:728053:1 // ensembl // 11 // --- /// YLR299W // cdna:known chromosome:SGD1:XII:726071:728053:1 gene:YLR299W // ensembl // 11 // --- YLR299C-A // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene -1.43951805657238 1.01721932550018 -1.01237056003487 1.28647144170012 1.07523480776108 Max fold change below threshold 4 1.43951805657238 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777556_at YIL155C.S1 Mitochondrial glycerol-3-phosphate dehydrogenase; expression is repressed by both glucose and cAMP and derepressed by non-fermentable carbon sources in a Snf1p, Rsf1p, Hap2/3/4/5 complex dependent manner 1.43949002969028 3561.82995605469 2513.52282714844 GUT2 5975 // carbohydrate metabolism // inferred from mutant phenotype /// 6116 // NADH oxidation // inferred from direct assay 5739 // mitochondrion // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from sequence similarity /// 5739 // mitochondrion // inferred from direct assay 4368 // glycerol-3-phosphate dehydrogenase activity // inferred from sequence similarity /// 4368 // glycerol-3-phosphate dehydrogenase activity // inferred from mutant phenotype /// 4368 // glycerol-3-phosphate dehydrogenase activity // inferred from direct assay 2611.84399414063 3759.72338867188 3363.9365234375 2415.20166015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL155C /GEN=GUT2 /DB_XREF=GI:6322036 /SEG=NC_001141:-51759,53708 /DEF=Mitochondrial glycerol-3-phosphate dehydrogenase; expression is repressed by both glucose and cAMP and derepressed by non-fermentable carbon sources in a Snf1p, Rsf1p, Hap2/3/4/5 complex dependent manner /NOTE=Gut2p; go_component: mitochondrion [goid GO:0005739] [evidence IMP,ISS] [pmid 8256521]; go_function: glycerol-3-phosphate dehydrogenase activity [goid GO:0004368] [evidence IDA] [pmid 12032156]; go_function: glycerol-3-phosphate dehydrogenase activity [goid GO:0004368] [evidence IMP,ISS] [pmid 8256521]; go_process: NADH oxidation [goid GO:0006116] [evidence IDA] [pmid 12032156]; go_process: carbohydrate metabolism [goid GO:0005975] [evidence IMP] [pmid 8256521] --- --- --- --- --- --- S0001417 // GUT2 SGDID:S0001417, Chr IX from 53708-51759, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016358 // cdna:Genscan chromosome:SGD1:IX:51759:53708:-1 // ensembl // 11 // --- /// GENEFINDER00000019068 // cdna:GeneFinder chromosome:SGD1:IX:51759:53663:-1 // ensembl // 11 // --- /// YIL155C // cdna:known chromosome:SGD1:IX:51759:53708:-1 gene:YIL155C // ensembl // 11 // --- --- No cerevisiae_gene -1.16838106775228 1.43949002969028 1.02579071654973 1.28795461405203 -1.08141859838389 Max fold change below threshold 4 1.43949002969028 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776961_at YKL152C.S1 Tetrameric phosphoglycerate mutase, mediates the conversion of 3-phosphoglycerate to 2-phosphoglycerate during glycolysis and the reverse reaction during gluconeogenesis 1.43937667444605 7115.06127929688 6815.30053710938 GPM1 6094 // gluconeogenesis // inferred from mutant phenotype /// 6096 // glycolysis // inferred from mutant phenotype 5829 // cytosol // inferred from direct assay 4619 // phosphoglycerate mutase activity // inferred from mutant phenotype 7958.404296875 8701.0595703125 5529.06298828125 5672.19677734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL152C /GEN=GPM1 /DB_XREF=GI:6322697 /SEG=NC_001143:-163647,164390 /DEF=converts 3-phosphoglycerate to 2-phosphoglycerate in glycolysis /NOTE=Gpm1p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: phosphoglycerate mutase activity [goid GO:0004619] [evidence IMP] [pmid 3033435]; go_process: gluconeogenesis [goid GO:0006094] [evidence TAS]; go_process: glycolysis [goid GO:0006096] [evidence TAS] --- --- --- --- --- --- S0001635 // GPM1 SGDID:S0001635, Chr XI from 164390-163647, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018304 // cdna:Genscan chromosome:SGD1:XI:163647:164390:-1 // ensembl // 11 // --- /// GENEFINDER00000023123 // cdna:GeneFinder chromosome:SGD1:XI:163647:164390:-1 // ensembl // 11 // --- /// YKL152C // cdna:known chromosome:SGD1:XI:163647:164390:-1 gene:YKL152C // ensembl // 11 // --- YKL153W // ensembl // 9 // Negative Strand Matching Probes No cerevisiae_gene -1.20487974904148 1.0933171080199 -1.35202470918151 -1.43937667444605 -1.40305504362313 Max fold change below threshold 4 1.43937667444605 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772675_at YBR245C.S1 Member of the imitation-switch (ISWI) class of ATP-dependent chromatin remodeling complexes; ATPase that forms a complex with Ioc2p and Ioc4p to regulate transcription elongation, and a complex with Ioc3p to repress transcription initiation 1.43919460791936 399.828002929688 354.096313476563 ISW1 6338 // chromatin remodeling // inferred from genetic interaction /// 6338 // chromatin remodeling // inferred from mutant phenotype /// 6338 // chromatin remodeling // inferred from physical interaction 16587 // ISW1 complex // inferred from physical interaction 16887 // ATPase activity // inferred from sequence similarity /// 16887 // ATPase activity // traceable author statement 338.368774414063 312.677490234375 486.978515625 369.823852539063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR245C /GEN=ISW1 /DB_XREF=GI:6319722 /SEG=NC_001134:-708107,711496 /DEF=has strong homology to Drosophila ISWI /NOTE=Isw1p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 11238381]; go_function: ATPase activity [goid GO:0016887] [evidence ISS,TAS] [pmid 11238381]; go_process: chromatin remodeling [goid GO:0006338] [evidence IGI,IMP,IPI] [pmid 11238381] --- --- --- --- --- --- S0000449 // ISW1 SGDID:S0000449, Chr II from 711534-708145, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021334 // cdna:Genscan chromosome:SGD1:II:708145:711354:-1 // ensembl // 11 // --- /// GENEFINDER00000022195 // cdna:GeneFinder chromosome:SGD1:II:708145:711354:-1 // ensembl // 11 // --- /// YBR245C // cdna:known chromosome:SGD1:II:708145:711534:-1 gene:YBR245C // ensembl // 11 // --- --- No cerevisiae_gene 1.29919068644552 -1.08216544197163 1.02927098827274 1.43919460791936 1.09296093642054 Max fold change below threshold 4 1.43919460791936 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773819_at YLR390W-A.S1 Secretory Stress Response protein 1.43903322126871 3651.86303710938 4488.43334960938 CCW14 7047 // cell wall organization and biogenesis // inferred from sequence similarity /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay 5199 // structural constituent of cell wall // inferred from physical interaction 5067.9921875 3781.92260742188 3521.80346679688 3908.87451171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR390W-A /GEN=CCW14 /DB_XREF=GI:6323423 /SEG=NC_001144:+903724,904440 /DEF=Secretory Stress Response protein /NOTE=Ccw14p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 9301021]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: structural constituent of cell wall [goid GO:0005199] [evidence IPI] [pmid 9301021]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP,ISS] [pmid 9079899] --- --- --- --- --- --- S0006429 // CCW14 SGDID:S0006429, Chr XII from 903724-904440, Verified ORF // sgd // 11 // --- /// GENSCAN00000018114 // cdna:Genscan chromosome:SGD1:XII:903724:904440:1 // ensembl // 11 // --- /// GENEFINDER00000024626 // cdna:GeneFinder chromosome:SGD1:XII:903724:904440:1 // ensembl // 11 // --- /// YLR390W-A // cdna:known chromosome:SGD1:XII:903724:904440:1 gene:YLR390W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.25529091146468 -1.34005708566174 -1.2768640505665 -1.43903322126871 -1.29653489062036 Max fold change below threshold 4 1.43903322126871 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779150_at YCL040W.S1 Hypothetical protein /// Glucokinase, catalyzes the phosphorylation of glucose at C6 in the first irreversible step of glucose metabolism; one of three glucose phosphorylating enzymes; expression regulated by non-fermentable carbon sources 1.43893271625989 7979.5625 6374.8193359375 GLK1 5975 // carbohydrate metabolism // inferred from mutant phenotype /// 6006 // glucose metabolism // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5829 // cytosol // traceable author statement 4340 // glucokinase activity // inferred from mutant phenotype /// 4340 // glucokinase activity // inferred from direct assay 7522.09033203125 10291.3642578125 5667.7607421875 5227.54833984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL040W /GEN=GLK1 /DB_XREF=GI:6319809 /SEG=NC_001135:+50838,52340 /DEF=Glucose phosphorylation /NOTE=Glk1p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: glucokinase activity [goid GO:0004340] [evidence IMP] [pmid 6341351]; go_process: carbohydrate metabolism [goid GO:0005975] [evidence IMP] [pmid 6357942] --- --- --- --- --- --- S0000545 // GLK1 SGDID:S0000545, Chr III from 50838-52340, Verified ORF // sgd // 11 // --- /// GENSCAN00000022434 // cdna:Genscan chromosome:SGD1:III:50838:52340:1 // ensembl // 11 // --- /// GENEFINDER00000023317 // cdna:GeneFinder chromosome:SGD1:III:50838:52340:1 // ensembl // 11 // --- /// YCL040W // cdna:known chromosome:SGD1:III:50838:52340:1 gene:YCL040W // ensembl // 11 // --- --- No cerevisiae_gene -1.38835548013322 1.36815217626261 -1.25394510354104 -1.32717146580328 -1.43893271625989 Max fold change below threshold 4 1.43893271625989 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776022_at YOR136W.S1 Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase, which catalyzes the oxidation of isocitrate to alpha-ketoglutarate in the TCA cycle 1.43890474928711 2862.89196777344 2508.44470214844 IDH2 6099 // tricarboxylic acid cycle // traceable author statement /// 6102 // isocitrate metabolism // traceable author statement /// 6537 // glutamate biosynthesis // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5759 // mitochondrial matrix // non-traceable author statement 4449 // isocitrate dehydrogenase (NAD+) activity // traceable author statement 2537.55981445313 2911.62255859375 2814.16137695313 2479.32958984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR136W /GEN=IDH2 /DB_XREF=GI:6324709 /SEG=NC_001147:+580250,581359 /DEF=Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase, which catalyzes the oxidation of isocitrate to alpha-ketoglutarate in the TCA cycle /NOTE=Idh2p; go_component: mitochondrial matrix [goid GO:0005759] [evidence NAS]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11914276]; go_function: isocitrate dehydrogenase (NAD+) activity [goid GO:0004449] [evidence TAS] [pmid 9175438]; go_process: glutamate biosynthesis [goid GO:0006537] [evidence TAS] [pmid 9175438]; go_process: isocitrate metabolism [goid GO:0006102] [evidence TAS] [pmid 9175438]; go_process: tricarboxylic acid cycle [goid GO:0006099] [evidence TAS] [pmid 9175438] --- --- --- --- --- --- S0005662 // IDH2 SGDID:S0005662, Chr XV from 580250-581359, Verified ORF // sgd // 11 // --- /// GENSCAN00000017562 // cdna:Genscan chromosome:SGD1:XV:580250:581359:1 // ensembl // 11 // --- /// GENEFINDER00000022556 // cdna:GeneFinder chromosome:SGD1:XV:580250:581359:1 // ensembl // 11 // --- /// YOR136W // cdna:known chromosome:SGD1:XV:580250:581359:1 gene:YOR136W // ensembl // 11 // --- --- No cerevisiae_gene -1.08470352160292 1.14741041452898 -1.43890474928711 1.10900297243224 -1.0234862782455 Max fold change below threshold 4 1.43890474928711 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770862_at YPL204W.S1 Protein kinase involved in regulating diverse events including vesicular trafficking, gene expression, DNA repair, and chromosome segregation; binds the CTD of RNA pol II; homolog of mammalian casein kinase 1delta (CK1delta) 1.43882881426062 1431.49835205078 2051.09912109375 HRR25 280 // nuclear division // traceable author statement /// 6281 // DNA repair // inferred from mutant phenotype /// 7059 // chromosome segregation // traceable author statement /// 7067 // mitosis // inferred from mutant phenotype /// 7126 // meiosis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 4680 // casein kinase activity // inferred from sequence similarity /// 4680 // casein kinase activity // inferred from direct assay 1978.96606445313 1487.59606933594 1375.40063476563 2123.23217773438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL204W /GEN=HRR25 /DB_XREF=GI:6325052 /SEG=NC_001148:+164275,165759 /DEF=Similar to YCK1 and YCK2, two other casein kinase I isoforms; found primarily in nucleus; may be involved in DNA-damage repair /NOTE=Hrr25p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 1409656]; go_function: casein kinase activity [goid GO:0004680] [evidence ISS] [pmid 1409656]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 1409656]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 9012827]; go_process: cell growth and/or maintenance [goid GO:0008151] [evidence TAS] [pmid 1409656]; go_process: chromosome segregation [goid GO:0007059] [evidence TAS] [pmid 1409656]; go_process: meiosis [goid GO:0007126] [evidence TAS] [pmid 1409656]; go_process: mitosis [goid GO:0007067] [evidence TAS] [pmid 1409656]; go_process: nuclear division [goid GO:0000280] [evidence TAS] [pmid 1409656] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 5.0E-38 /// hanks // 3.1.7 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; PCTAIRE1 // 6.0E-43 --- --- S0006125 // HRR25 SGDID:S0006125, Chr XVI from 164275-165759, Verified ORF // sgd // 11 // --- /// GENSCAN00000017031 // cdna:Genscan chromosome:SGD1:XVI:164275:165759:1 // ensembl // 11 // --- /// GENEFINDER00000020756 // cdna:GeneFinder chromosome:SGD1:XVI:164275:165759:1 // ensembl // 11 // --- /// YPL204W // cdna:known chromosome:SGD1:XVI:164275:165759:1 gene:YPL204W // ensembl // 11 // --- --- No cerevisiae_gene -1.16482687275079 -1.33031143685163 -1.31370618332937 -1.43882881426062 1.072899740866 Max fold change below threshold 4 1.43882881426062 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-YFL039C3_at AFFX-YFL039C3 Actin, structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions 1.43876754933018 7084.56298828125 5936.17724609375 ACT1 1 // mitochondrion inheritance // traceable author statement /// 11 // vacuole inheritance // traceable author statement /// 132 // establishment of mitotic spindle orientation // traceable author statement /// 910 // cytokinesis // traceable author statement /// 1300 // chronological cell aging // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 6887 // exocytosis // traceable author statement /// 6897 // endocytosis // traceable author statement /// 6970 // response to osmotic stress // traceable author statement /// 7047 // cell wall organization and biogenesis // traceable author statement /// 7119 // budding cell isotropic bud growth // traceable author statement /// 9306 // protein secretion // traceable author statement /// 16573 // histone acetylation // inferred from direct assay /// 30037 // actin filament reorganization during cell cycle // traceable author statement /// 30050 // vesicle transport along actin filament // traceable author statement /// 30437 // sporulation (sensu Fungi) // traceable author statement /// 30468 // establishment of cell polarity (sensu Fungi) // traceable author statement 123 // histone acetyltransferase complex // inferred from direct assay /// 142 // contractile ring (sensu Saccharomyces) // traceable author statement /// 812 // SWR1 complex // inferred from physical interaction /// 5884 // actin filament // traceable author statement /// 30479 // actin cortical patch // traceable author statement /// 30482 // actin cable // traceable author statement /// 31011 // INO80 complex // inferred from physical interaction /// 43189 // H4/H2A histone acetyltransferase complex // inferred from physical interaction 5200 // structural constituent of cytoskeleton // traceable author statement 6990.4228515625 8843.2177734375 5325.908203125 4881.931640625 2.57263765846005E-10 2.57263765846005E-10 2.57263765846005E-10 2.57263765846005E-10 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /GEN=ACT1 /DB_XREF=gb:V01288.1 /DB_XREF=spd:YFL039C /NOTE=SIF corresponding to nucleotides 1255-1538 of gb:V01288.1 /DEF=Yeast gene for actin. --- --- --- --- --- --- S0001855 // ACT1 SGDID:S0001855, Chr VI from 54695-54686,54377-53260, reverse complement, intron sequence removed, Verified ORF // sgd // 50 // --- /// GENEFINDER00000018587 // cdna:GeneFinder chromosome:SGD1:VI:53260:54342:-1 // ensembl // 50 // --- /// GENSCAN00000023208 // cdna:Genscan chromosome:SGD1:VI:53260:54342:-1 // ensembl // 50 // --- /// YFL039C // cdna:known chromosome:SGD1:VI:53260:54695:-1 gene:YFL039C // ensembl // 50 // --- --- AFFX_control cerevisiae_gene -1.43876754933018 1.26504761746435 -1.36659105244911 -1.31253160680855 -1.43189691420332 Max fold change below threshold 4 1.43876754933018 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772260_at YDL088C.S1 Nuclear pore complex subunit, part of a subcomplex also containing Nup53p, Nup170p, and Pse1p 1.43876509307218 1258.00592041016 1747.66613769531 ASM4 59 // protein-nucleus import, docking // inferred from physical interaction /// 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6999 // nuclear pore organization and biogenesis // traceable author statement 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement 1758.40576171875 1293.8486328125 1222.16320800781 1736.92651367188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL088C /GEN=ASM4 /DB_XREF=GI:6320115 /SEG=NC_001136:-298417,300003 /DEF=Nuclear pore complex subunit, part of a subcomplex also containing Nup53p, Nup170p, and Pse1p /NOTE=Asm4p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus import, docking [goid GO:0000059] [evidence IPI] [pmid 9864357]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0002246 // ASM4 SGDID:S0002246, Chr IV from 300003-298417, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023768 // cdna:GeneFinder chromosome:SGD1:IV:298417:299928:-1 // ensembl // 10 // --- /// GENSCAN00000025035 // cdna:Genscan chromosome:SGD1:IV:298417:300003:-1 // ensembl // 10 // --- /// YDL088C // cdna:known chromosome:SGD1:IV:298417:300003:-1 gene:YDL088C // ensembl // 10 // --- --- No cerevisiae_gene 1.13141134311614 -1.35905060076187 -1.19422765839899 -1.43876509307218 -1.01236623880044 Max fold change below threshold 4 1.43876509307218 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777797_at YFR034C.S1 Basic helix-loop-helix (bHLH) transcription factor; binds cooperatively with Pho2p to the PHO5 promoter; function is regulated by phosphorylation at multiple sites and by phosphate availability 1.43848740760902 244.970092773438 289.104949951172 PHO4 6796 // phosphate metabolism // traceable author statement /// 16036 // cellular response to phosphate starvation // inferred from mutant phenotype /// 16036 // cellular response to phosphate starvation // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3700 // transcription factor activity // traceable author statement 265.956604003906 200.999755859375 288.9404296875 312.253295898438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR034C /GEN=PHO4 /DB_XREF=GI:14318559 /SEG=NC_001138:-225008,225946 /DEF=Basic helix-loop-helix (bHLH) transcription factor; binds cooperatively with Pho2p to the PHO5 promoter; function is regulated by phosphorylation at multiple sites and by phosphate availability /NOTE=Pho4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10320381]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10320381]; go_function: transcription factor activity [goid GO:0003700] [evidence TAS] [pmid 8918192]; go_process: cellular response to phosphate starvation [goid GO:0016036] [evidence IDA,IMP] [pmid 10320381]; go_process: phosphate metabolism [goid GO:0006796] [evidence TAS] [pmid 8918192] --- --- --- --- --- --- S0001930 // PHO4 SGDID:S0001930, Chr VI from 225946-225008, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018508 // cdna:GeneFinder chromosome:SGD1:VI:224314:225946:-1 // ensembl // 11 // --- /// GENSCAN00000023274 // cdna:Genscan chromosome:SGD1:VI:225008:225946:-1 // ensembl // 11 // --- /// YFR034C // cdna:known chromosome:SGD1:VI:225008:225946:-1 gene:YFR034C // ensembl // 11 // --- --- No cerevisiae_gene 1.43848740760902 -1.32316879125951 1.17597333108736 1.08641945842885 1.17407611316112 Max fold change below threshold 4 1.43848740760902 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773023_at YDR512C.S1 Non-essential protein of unknown function required for transcriptional induction of the early meiotic-specific transcription factor IME1, also required for sporulation 1.43837940558792 49.6487102508545 43.167652130127 EMI1 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype --- --- 42.3918228149414 60.9755249023438 38.3218955993652 43.9434814453125 0.00805663969367743 0.00292969006113708 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR512C /GEN=EMI1 /DB_XREF=GI:6320721 /SEG=NC_001136:-1470488,1471051 /DEF=Non-essential protein of unknown function required for transcriptional induction of the early meiotic-specific transcription factor IME1, also required for sporulation /NOTE=Emi1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 12586695] --- --- --- --- --- --- S0002920 // EMI1 SGDID:S0002920, Chr IV from 1471053-1470490, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025499 // cdna:Genscan chromosome:SGD1:IV:1470490:1471008:-1 // ensembl // 11 // --- /// YDR512C // cdna:known chromosome:SGD1:IV:1470490:1471053:-1 gene:YDR512C // ensembl // 11 // --- --- No cerevisiae_gene -1.00169082325912 1.43837940558792 -1.12208434078733 -1.10620370292026 1.03660278155872 Max fold change below threshold 4 1.43837940558792 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1775542_at YPL133C.S1 Zinc cluster protein involved in conferring resistance to ketoconazole 1.43810023075288 651.657531738281 650.744476318359 RDS2 9410 // response to xenobiotic stimulus // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3700 // transcription factor activity // inferred from sequence similarity /// 3700 // transcription factor activity // inferred from mutant phenotype 609.735595703125 552.917785644531 750.397277832031 691.753356933594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL133C /GEN=RDS2 /DB_XREF=GI:6325124 /SEG=NC_001148:-299887,301227 /DEF=Regulator of drug sensitivity /NOTE=Rds2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: transcription factor activity [goid GO:0003700] [evidence IMP,ISS] [pmid 11943786]; go_process: response to xenobiotic stimulus [goid GO:0009410] [evidence IMP] [pmid 11943786] --- --- --- --- --- --- S0006054 // RDS2 SGDID:S0006054, Chr XVI from 301227-299887, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017087 // cdna:Genscan chromosome:SGD1:XVI:299887:301227:-1 // ensembl // 11 // --- /// GENEFINDER00000021037 // cdna:GeneFinder chromosome:SGD1:XVI:299887:301227:-1 // ensembl // 11 // --- /// YPL133C // cdna:known chromosome:SGD1:XVI:299887:301227:-1 gene:YPL133C // ensembl // 11 // --- --- No cerevisiae_gene -1.35277638921699 -1.10275996094494 1.43810023075288 1.23069291529011 1.13451365117677 Max fold change below threshold 4 1.43810023075288 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773508_at YOR148C.S1 Essential protein that promotes the first step of splicing and is required for the final stages of spliceosome maturation; interacts with Prp2p, which may release Spp2p from the spliceosome following the first cleavage reaction 1.43788365753544 316.172302246094 264.004295349121 SPP2 398 // nuclear mRNA splicing, via spliceosome // inferred from mutant phenotype 5681 // spliceosome complex // inferred from direct assay --- 239.827041625977 344.843383789063 287.501220703125 288.181549072266 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR148C /GEN=SPP2 /DB_XREF=GI:6324722 /SEG=NC_001147:-608640,609197 /DEF=Required for final stages of splicesome maturation; promotes step 1 of splicing /NOTE=Spp2p; go_component: spliceosome complex [goid GO:0005681] [evidence IDA] [pmid 7493316]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IMP] [pmid 7493316] --- --- --- --- --- --- S0005674 // SPP2 SGDID:S0005674, Chr XV from 609197-608640, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000022821 // cdna:GeneFinder chromosome:SGD1:XV:608640:609197:-1 // ensembl // 10 // --- /// YOR148C // cdna:known chromosome:SGD1:XV:608640:609197:-1 gene:YOR148C // ensembl // 10 // --- --- No cerevisiae_gene -1.41370868757815 1.43788365753544 -1.00105166662601 1.19878566968065 1.2016224155477 Max fold change below threshold 4 1.43788365753544 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771750_at SPBPB10D8.01.S1 --- 1.43765602768923 --- --- --- --- 1.39065229892731 1.17841756343842 1.48864305019379 1.10050415992737 0.725830018520355 0.870360970497131 0.932372987270355 0.828612983226776 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBPB10D8.01 /DEF=membrane transporter --- --- --- --- --- --- SPBPB10D8.01 // |||membrane transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.27096177081665 -1.18010147003379 -1.43765602768923 1.07046387608323 -1.26365019739597 Max fold change below threshold 0 1.43765602768923 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1775073_at SPAC6F12.07.S1 --- 1.43764304380608 --- --- --- --- 4.7362847328186 6.80908679962158 6.19938945770264 5.24793672561646 0.274170011281967 0.0375977009534836 0.219482004642487 0.0461426004767418 A P A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC6F12.07 /GEN=tom20 /DEF=mitochondrial TOM complex component --- --- --- --- --- --- SPAC6F12.07 // |tom20||mitochondrial TOM complex component Tom20|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.07449760181236 1.43764304380608 1.41730549037528 1.30891401328681 1.10802813210374 Max fold change below threshold 4 1.43764304380608 Max fold change below threshold APPPAP No 4 0 APAP 2 2 0 No No 1 < x = 2
1770792_at YLR237W.S1 Plasma membrane transporter responsible for the uptake of thiamine, member of the major facilitator superfamily of transporters; mutation of human ortholog causes thiamine-responsive megaloblastic anemia 1.43758863752832 360.704315185547 480.039276123047 THI7 15888 // thiamin transport // traceable author statement 5886 // plasma membrane // inferred from mutant phenotype /// 5886 // plasma membrane // inferred from sequence similarity 15234 // thiamin transporter activity // traceable author statement 478.561096191406 332.891540527344 388.51708984375 481.517456054688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR237W /GEN=THI7 /DB_XREF=GI:6323266 /SEG=NC_001144:+612369,614165 /DEF=Thiamine Metabolism /NOTE=Thi7p; go_component: plasma membrane [goid GO:0005886] [evidence IMP,ISS] [pmid 9235906]; go_function: thiamin transporter activity [goid GO:0015234] [evidence TAS] [pmid 9655908]; go_process: thiamin transport [goid GO:0015888] [evidence TAS] [pmid 9655908] --- --- --- --- --- S0004227 // span:43-62,77-99,112-134,167-189,196-218,241-260,273-295,319-341,372-389,399-421,442-464,484-506 // numtm:12 S0004227 // THI7 SGDID:S0004227, Chr XII from 612369-614165, Verified ORF // sgd // 11 // --- /// GENSCAN00000018004 // cdna:Genscan chromosome:SGD1:XII:612369:614165:1 // ensembl // 11 // --- /// GENEFINDER00000024913 // cdna:GeneFinder chromosome:SGD1:XII:612369:614165:1 // ensembl // 11 // --- /// YLR237W // cdna:known chromosome:SGD1:XII:612369:614165:1 gene:YLR237W // ensembl // 11 // --- --- No cerevisiae_gene -1.40011365914132 -1.43758863752832 1.14957481718893 -1.23176330900622 1.00617760174575 Max fold change below threshold 4 1.43758863752832 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776041_at YGL180W.S1 Protein serine/threonine kinase, required for autophagy and for the cytoplasm-to-vacuole targeting (Cvt) pathway 1.43749089644524 499.596939086914 458.003540039063 ATG1 6914 // autophagy // inferred from mutant phenotype 5829 // cytosol // inferred from direct assay 4674 // protein serine/threonine kinase activity // inferred from sequence similarity /// 4674 // protein serine/threonine kinase activity // inferred from direct assay 402.2724609375 459.161407470703 540.032470703125 513.734619140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL180W /GEN=ATG1 /DB_XREF=GI:6321258 /SEG=NC_001139:+160069,162762 /DEF=Protein serine/threonine kinase, required for autophagy and for the cytoplasm-to-vacuole targeting (Cvt) pathway /NOTE=Atg1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 9190802]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence ISS] [pmid 9190802]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence IDA] [pmid 9224897]; go_process: autophagy [goid GO:0006914] [evidence IMP] [pmid 8224160] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-53 /// hanks // 2.1.8 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DdMLCK // 1.0E-66 --- --- S0003148 // ATG1 SGDID:S0003148, Chr VII from 160071-162764, Verified ORF // sgd // 10 // --- /// GENSCAN00000019213 // cdna:Genscan chromosome:SGD1:VII:160071:162764:1 // ensembl // 10 // --- /// GENEFINDER00000021732 // cdna:GeneFinder chromosome:SGD1:VII:160071:162764:1 // ensembl // 10 // --- /// YGL180W // cdna:known chromosome:SGD1:VII:160071:162764:1 gene:YGL180W // ensembl // 10 // --- --- No cerevisiae_gene -1.14573898441062 1.14141894376916 1.43749089644524 1.34245448829526 1.27708125468833 Max fold change below threshold 4 1.43749089644524 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776841_at YER090W.S1 Anthranilate synthase, catalyzes the initial step of tryptophan biosynthesis, forms multifunctional hetero-oligomeric anthranilate synthase:indole-3-glycerol phosphate synthase enzyme complex with Trp3p 1.43746362104134 1991.02197265625 2279.27331542969 TRP2 162 // tryptophan biosynthesis // inferred from mutant phenotype /// 162 // tryptophan biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5950 // anthranilate synthase complex // inferred from physical interaction 4049 // anthranilate synthase activity // inferred from genetic interaction /// 4049 // anthranilate synthase activity // inferred from direct assay /// 4049 // anthranilate synthase activity // inferred from sequence similarity 2357.455078125 1749.81616210938 2232.22778320313 2201.09155273438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER090W /GEN=TRP2 /DB_XREF=GI:6320935 /SEG=NC_001137:+337945,339468 /DEF=anthranilate synthase Component I /NOTE=Trp2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: anthranilate synthase activity [goid GO:0004049] [evidence IDA] [pmid 3881257]; go_function: anthranilate synthase activity [goid GO:0004049] [evidence IGI,ISS] [pmid 6323449]; go_process: tryptophan biosynthesis [goid GO:0000162] [evidence TAS] [pmid 3881257]; go_process: tryptophan biosynthesis [goid GO:0000162] [evidence IMP] [pmid 8432699] --- --- --- --- --- --- S0000892 // TRP2 SGDID:S0000892, Chr V from 337945-339468, Verified ORF // sgd // 11 // --- /// GENSCAN00000016877 // cdna:Genscan chromosome:SGD1:V:337945:339468:1 // ensembl // 11 // --- /// GENEFINDER00000019608 // cdna:GeneFinder chromosome:SGD1:V:337945:339468:1 // ensembl // 11 // --- /// YER090W // cdna:known chromosome:SGD1:V:337945:339468:1 gene:YER090W // ensembl // 11 // --- --- No cerevisiae_gene 1.09989471979268 -1.34725871732898 -1.43746362104134 -1.05609969370697 -1.0710390829479 Max fold change below threshold 4 1.43746362104134 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770540_at YJL068C.S1 Hypothetical protein 1.43684687535308 1655.06060791016 1295.24645996094 --- 46294 // formaldehyde catabolism // traceable author statement 5829 // cytosol // inferred from direct assay 4091 // carboxylesterase activity // inferred from direct assay 1256.50720214844 1504.71276855469 1805.40844726563 1333.98571777344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL068C /GEN=UTP18 /DB_XREF=GI:6322393 /SEG=NC_001142:-312932,313831 /DEF=Hypothetical ORF /NOTE=Yjl068cp; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 10427036]; go_function: carboxylesterase activity [goid GO:0004091] [evidence IDA] [pmid 10427036]; go_process: formaldehyde catabolism [goid GO:0046294] [evidence TAS] [pmid 10427036] --- --- --- --- --- --- S0003604 // YJL068C SGDID:S0003604, Chr X from 313831-312932, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024087 // cdna:Genscan chromosome:SGD1:X:312932:313750:-1 // ensembl // 11 // --- /// GENEFINDER00000024264 // cdna:GeneFinder chromosome:SGD1:X:312932:313750:-1 // ensembl // 11 // --- /// YJL068C // cdna:known chromosome:SGD1:X:312932:313831:-1 gene:YJL068C // ensembl // 11 // --- --- No cerevisiae_gene -1.32812254645613 1.19753612711639 1.24797968233144 1.43684687535308 1.0616618157799 Max fold change below threshold 4 1.43684687535308 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778801_at YKR089C.S1 Protein of unknown function found in lipid particles; potential Cdc28p substrate 1.43574528100588 1761.35980224609 2423.27905273438 --- --- 5811 // lipid particle // inferred from direct assay --- 2414.01342773438 1681.36608886719 1841.353515625 2432.54467773438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR089C /GEN=OMA1 /DB_XREF=GI:6322942 /SEG=NC_001143:-605274,608006 /DEF=Protein of unknown function found in lipid particles; potential Cdc28p substrate /NOTE=Ykr089cp --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 5.19999980926514 --- S0001797 // STC1 SGDID:S0001797, Chr XI from 608007-605275, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018491 // cdna:Genscan chromosome:SGD1:XI:605275:608007:-1 // ensembl // 11 // --- /// GENEFINDER00000023151 // cdna:GeneFinder chromosome:SGD1:XI:605275:608007:-1 // ensembl // 11 // --- /// YKR089C // cdna:known chromosome:SGD1:XI:605275:608007:-1 gene:YKR089C // ensembl // 11 // --- --- No cerevisiae_gene -1.34383419945444 -1.43574528100588 -1.36381242977268 -1.31099943995002 1.00767653145053 Max fold change below threshold 4 1.43574528100588 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779724_at YER128W.S1 Hypothetical protein 1.4356509240059 102.755504608154 154.517234802246 --- --- --- --- 141.650909423828 98.6666793823242 106.844329833984 167.383560180664 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER128W /GEN=LCP5 /DB_XREF=GI:6320975 /SEG=NC_001137:+415855,416466 /DEF=Hypothetical ORF /NOTE=Yer128wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000930 // YER128W SGDID:S0000930, Chr V from 415855-416466, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016909 // cdna:Genscan chromosome:SGD1:V:415855:416466:1 // ensembl // 11 // --- /// GENEFINDER00000019572 // cdna:GeneFinder chromosome:SGD1:V:415855:416466:1 // ensembl // 11 // --- /// YER128W // cdna:known chromosome:SGD1:V:415855:416466:1 gene:YER128W // ensembl // 11 // --- --- No cerevisiae_gene -1.01125577851715 -1.4356509240059 1.31185005139373 -1.32576908520954 1.18166244651379 Max fold change below threshold 4 1.4356509240059 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769858_at YLR029C.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl15Bp and has similarity to rat L15 ribosomal protein; binds to 5.8 S rRNA 1.43440156382137 2153.55261230469 2547.33520507813 RPL15A 6412 // protein biosynthesis // traceable author statement 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3723 // RNA binding // inferred from direct assay /// 3735 // structural constituent of ribosome // traceable author statement 2688.60131835938 1982.2314453125 2324.87377929688 2406.06909179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR029C /GEN=RPL15A /DB_XREF=GI:6323057 /SEG=NC_001144:-201977,202591 /DEF=Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl15Bp and has similarity to rat L15 ribosomal protein; binds to 5.8 S rRNA /NOTE=Rpl15ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 6337137]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0004019 // RPL15A SGDID:S0004019, Chr XII from 202591-201977, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017843 // cdna:Genscan chromosome:SGD1:XII:201977:202591:-1 // ensembl // 11 // --- /// GENEFINDER00000024805 // cdna:GeneFinder chromosome:SGD1:XII:201977:202591:-1 // ensembl // 11 // --- /// YLR029C // cdna:known chromosome:SGD1:XII:201977:202591:-1 gene:YLR029C // ensembl // 11 // --- --- No cerevisiae_gene 1.43440156382137 -1.35635085636305 -1.28488912395093 -1.15645044574097 -1.11742481856641 Max fold change below threshold 4 1.43440156382137 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778568_at YNL192W.S1 Chitin synthase I, requires activation from zymogenic form in order to catalyze the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for repairing the chitin septum during cytokinesis; transcription activated by mating factor 1.43429720757637 2513.42828369141 2041.32647705078 CHS1 7109 // cytokinesis, completion of separation // inferred from mutant phenotype /// 7114 // cell budding // traceable author statement 5886 // plasma membrane // inferred from direct assay /// 45009 // chitosome // inferred from direct assay 4100 // chitin synthase activity // inferred from direct assay 2116.06860351563 3035.0712890625 1991.78527832031 1966.58435058594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL192W /GEN=CHS1 /DB_XREF=GI:6324137 /SEG=NC_001146:+276501,279896 /DEF=disrupts mating and sporulation efficiently /NOTE=Chs1p; go_component: chitosome [goid GO:0045009] [evidence TAS] [pmid 8970154]; go_component: plasma membrane [goid GO:0005886] [evidence TAS] [pmid 8970154]; go_function: chitin synthase activity [goid GO:0004100] [evidence IDA] [pmid 7952171]; go_process: budding [goid GO:0007114] [evidence TAS] [pmid 8257107] --- --- --- --- --- S0005136 // span:797-819,832-854,864-886,914-936,940-962,1042-1064,1100-1122 // numtm:7 S0005136 // CHS1 SGDID:S0005136, Chr XIV from 276501-279896, Verified ORF // sgd // 11 // --- /// GENSCAN00000019886 // cdna:Genscan chromosome:SGD1:XIV:276501:279896:1 // ensembl // 11 // --- /// GENEFINDER00000020574 // cdna:GeneFinder chromosome:SGD1:XIV:279312:279896:1 // ensembl // 10 // --- /// YNL192W // cdna:known chromosome:SGD1:XIV:276501:279896:1 gene:YNL192W // ensembl // 11 // --- --- No cerevisiae_gene -1.41980921054248 1.43429720757637 -1.11694000225388 -1.06239795350838 -1.07601212370329 Max fold change below threshold 4 1.43429720757637 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773780_at YGR032W.S1 Catalytic subunit of 1,3-beta-glucan synthase, has similarity to an alternate catalytic subunit, Fks1p (Gsc1p); Rho1p encodes the regulatory subunit; involved in cell wall synthesis and maintenance 1.43428301887882 5290.48364257813 3898.6337890625 GSC2 6075 // beta-1,3 glucan biosynthesis // traceable author statement /// 7047 // cell wall organization and biogenesis // traceable author statement 148 // 1,3-beta-glucan synthase complex // traceable author statement /// 5628 // prospore membrane // inferred from direct assay /// 30478 // actin cap // inferred from direct assay 3843 // 1,3-beta-glucan synthase activity // inferred from direct assay 4228.63037109375 6065.052734375 4515.91455078125 3568.63720703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR032W /GEN=GSC2 /DB_XREF=GI:6321469 /SEG=NC_001139:+548266,553953 /DEF=Catalytic subunit of 1,3-beta-glucan synthase, has similarity to an alternate catalytic subunit, Fks1p (Gsc1p); Rho1p encodes the regulatory subunit; involved in cell wall synthesis and maintenance /NOTE=Gsc2p; go_component: 1,3-beta-glucan synthase complex [goid GO:0000148] [evidence TAS] [pmid 7649185]; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IDA] [pmid 10652251]; go_function: 1,3-beta-glucan synthase activity [goid GO:0003843] [evidence IDA] [pmid 7649185]; go_process: beta-1,3 glucan biosynthesis [goid GO:0006075] [evidence TAS] [pmid 7565718]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence TAS] [pmid 7565718] --- --- --- --- --- S0003264 // span:464-486,507-529,549-571,583-605,641-663,694-716,1376-1398,1459-1481,1491-1513,1580-1602,1617-1639,1660-1682,1692-1714,1819-1841 // numtm:14 S0003264 // GSC2 SGDID:S0003264, Chr VII from 548268-553955, Verified ORF // sgd // 11 // --- /// GENSCAN00000019364 // cdna:Genscan chromosome:SGD1:VII:548268:553955:1 // ensembl // 11 // --- /// GENEFINDER00000021705 // cdna:GeneFinder chromosome:SGD1:VII:548268:553955:1 // ensembl // 11 // --- /// YGR032W // cdna:known chromosome:SGD1:VII:548268:553955:1 gene:YGR032W // ensembl // 11 // --- --- No cerevisiae_gene -1.34451741712172 1.43428301887882 -1.1613625953899 1.06793787928388 -1.18494263377687 Max fold change below threshold 4 1.43428301887882 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772838_at YOR120W.S1 Putative NADP(+) coupled glycerol dehydrogenase, proposed to be involved in an alternative pathway for glycerol catabolism 1.43408868150979 6359.55004882813 4743.64453125 GCY1 9651 // response to salt stress // inferred from expression pattern /// 19568 // arabinose catabolism // inferred from direct assay /// 42843 // D-xylose catabolism // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4033 // aldo-keto reductase activity // inferred from direct assay /// 4033 // aldo-keto reductase activity // inferred from sequence similarity 5218.904296875 7484.37158203125 5234.728515625 4268.384765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR120W /GEN=GCY1 /DB_XREF=GI:6324694 /SEG=NC_001147:+551114,552052 /DEF=Putative NADP(+) coupled glycerol dehydrogenase, proposed to be involved in an alternative pathway for glycerol catabolism /NOTE=Gcy1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: aldo-keto reductase activity [goid GO:0004033] [evidence IDA] [pmid 10818358]; go_function: aldo-keto reductase activity [goid GO:0004033] [evidence ISS] [pmid 11306085]; go_process: D-xylose metabolism [goid GO:0042732] [evidence IDA] [pmid 12271459]; go_process: arabinose metabolism [goid GO:0019566] [evidence IDA] [pmid 12271459]; go_process: response to salt stress [goid GO:0009651] [evidence IEP] [pmid 9038161] --- --- --- --- --- --- S0005646 // GCY1 SGDID:S0005646, Chr XV from 551114-552052, Verified ORF // sgd // 11 // --- /// GENSCAN00000017550 // cdna:Genscan chromosome:SGD1:XV:551114:552052:1 // ensembl // 11 // --- /// GENEFINDER00000022789 // cdna:GeneFinder chromosome:SGD1:XV:551114:552052:1 // ensembl // 11 // --- /// YOR120W // cdna:known chromosome:SGD1:XV:551114:552052:1 gene:YOR120W // ensembl // 11 // --- YOR121C // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene -1.29953570450249 1.43408868150979 -1.08803298857579 1.00303209598219 -1.22268834311867 Max fold change below threshold 4 1.43408868150979 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771670_at YDR506C.S1 Hypothetical protein 1.43372381642272 116.162971496582 171.443405151367 --- --- --- --- 149.402374267578 104.205825805664 128.1201171875 193.484436035156 0.000732421991415322 0.00195312988944352 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR506C /GEN=PSP1 /DB_XREF=GI:6320714 /SEG=NC_001136:-1459716,1461542 /DEF=Hypothetical ORF /NOTE=Ydr506cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002914 // span:588-607 // numtm:1 S0002914 // YDR506C SGDID:S0002914, Chr IV from 1461544-1459718, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023740 // cdna:GeneFinder chromosome:SGD1:IV:1459718:1461544:-1 // ensembl // 11 // --- /// GENSCAN00000025495 // cdna:Genscan chromosome:SGD1:IV:1459718:1461478:-1 // ensembl // 11 // --- /// YDR506C // cdna:known chromosome:SGD1:IV:1459718:1461544:-1 gene:YDR506C // ensembl // 11 // --- --- No cerevisiae_gene -1.14170971345415 -1.43372381642272 1.3989680973818 -1.16611175159114 1.29505596536657 Max fold change below threshold 4 1.43372381642272 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775487_at SPBC31F10.16.S1 --- 1.43353811767803 --- --- --- --- 6.31911325454712 5.23659133911133 4.40805387496948 5.47650766372681 0.0461426004767418 0.24609400331974 0.0439453125 0.030273400247097 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC31F10.16 /DEF=conserved fungal protein --- --- --- --- --- --- SPBC31F10.16 // |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.12425937063015 -1.20672262648234 1.24316863214782 -1.43353811767803 -1.15385819623722 Max fold change below threshold 4 1.43353811767803 Max fold change below threshold PPAAPP No 4 0 PAPP 1 3 0 No No 2 < x = 3
1769319_at YIL157C.S1 The authentic, non-tagged protein was localized to the mitochondria 1.43345626710983 1518.51812744141 1288.591796875 --- --- 5739 // mitochondrion // inferred from direct assay --- 1272.796875 1212.53759765625 1824.49865722656 1304.38671875 0.00195312988944352 0.00122069998178631 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL157C /GEN=BNR1 /DB_XREF=GI:6322034 /SEG=NC_001141:-46949,47542 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Yil157cp --- --- --- --- --- --- S0001419 // FMP35 SGDID:S0001419, Chr IX from 47542-46949, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000016356 // cdna:Genscan chromosome:SGD1:IX:46949:47542:-1 // ensembl // 10 // --- /// GENEFINDER00000019153 // cdna:GeneFinder chromosome:SGD1:IX:46949:47539:-1 // ensembl // 10 // --- /// YIL157C // cdna:known chromosome:SGD1:IX:46949:47542:-1 gene:YIL157C // ensembl // 10 // --- YIL156W-A // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene -1.2321684079963 -1.04969683204894 1.4285175287568 1.43345626710983 1.02481923421599 Max fold change below threshold 4 1.43345626710983 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771526_at YPL132W.S1 Mitochondrial inner membrane protein required for delivery of copper to the Cox1p subunit of cytochrome c oxidase; association with mitochondrial ribosomes suggests that copper delivery may occur during translation of Cox1p 1.43340795067021 434.704925537109 560.744750976563 COX11 6461 // protein complex assembly // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from mutant phenotype /// 15680 // intracellular copper ion transport // inferred from direct assay 5740 // mitochondrial membrane // inferred from direct assay /// 5743 // mitochondrial inner membrane // inferred from direct assay /// 5761 // mitochondrial ribosome // inferred from direct assay 5507 // copper ion binding // inferred from direct assay 536.646484375 397.10595703125 472.303894042969 584.843017578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL132W /GEN=COX11 /DB_XREF=GI:6325125 /SEG=NC_001148:+301715,302617 /DEF=Mitochondrial membrane protein required for assembly of active cytochrome c oxidase, probably involved in insertion of Cu(B) and magnesium /NOTE=Cox11p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 10501934]; go_component: mitochondrial membrane [goid GO:0005740] [evidence IDA] [pmid 2167832]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 9847145]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 10617659]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP] [pmid 2167832] --- --- --- --- --- S0006053 // span:85-107 // numtm:1 S0006053 // COX11 SGDID:S0006053, Chr XVI from 301715-302617, Verified ORF // sgd // 11 // --- /// GENSCAN00000017088 // cdna:Genscan chromosome:SGD1:XVI:301715:302617:1 // ensembl // 11 // --- /// GENEFINDER00000020804 // cdna:GeneFinder chromosome:SGD1:XVI:301715:302617:1 // ensembl // 11 // --- /// YPL132W // cdna:known chromosome:SGD1:XVI:301715:302617:1 gene:YPL132W // ensembl // 11 // --- --- No cerevisiae_gene -1.3877709888458 -1.35139368944991 1.43340795067021 -1.13623133567935 1.08981058221085 Max fold change below threshold 4 1.43340795067021 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769356_at YDR056C.S1 Hypothetical protein 1.43299176266957 663.591018676758 758.573150634766 --- --- 5624 // membrane fraction // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay --- 685.6328125 478.462493896484 848.719543457031 831.513488769531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR056C /GEN=PST1 /DB_XREF=GI:6320261 /SEG=NC_001136:-565019,565636 /DEF=Hypothetical ORF /NOTE=Ydr056cp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 11935221]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002463 // YDR056C SGDID:S0002463, Chr IV from 565637-565020, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENEFINDER00000023809 // cdna:GeneFinder chromosome:SGD1:IV:565020:565598:-1 // ensembl // 9 // --- /// GENSCAN00000025140 // cdna:Genscan chromosome:SGD1:IV:565020:565637:-1 // ensembl // 10 // --- /// YDR056C // cdna:known chromosome:SGD1:IV:565020:565637:-1 gene:YDR056C // ensembl // 10 // --- --- No cerevisiae_gene 1.00185473544627 -1.43299176266957 1.36812764211894 1.23786307770536 1.21276793293718 Max fold change below threshold 4 1.43299176266957 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772865_at YOL128C.S1 Protein kinase related to mammalian glycogen synthase kinases of the GSK-3 family; GSK-3 homologs (Mck1p, Rim11p, Mrk1p, Ygk3p) are involved in control of Msn2p-dependent transcription of stress responsive genes and in protein degradation 1.432847460893 896.097808837891 843.260070800781 YGK3 6468 // protein amino acid phosphorylation // inferred from genetic interaction /// 6468 // protein amino acid phosphorylation // inferred from sequence similarity /// 6508 // proteolysis and peptidolysis // inferred from genetic interaction /// 6950 // response to stress // inferred from genetic interaction /// 6950 // response to stress // inferred from mutant phenotype --- 4696 // glycogen synthase kinase 3 activity // inferred from genetic interaction /// 4696 // glycogen synthase kinase 3 activity // inferred from sequence similarity 802.031616210938 983.200378417969 808.995239257813 884.488525390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL128C /GEN=YGK3 /DB_XREF=GI:6324444 /SEG=NC_001147:-78351,79478 /DEF=Yeast homologue of mammalian Glycogen Synthase Kinase 3 /NOTE=Ygk3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: glycogen synthase kinase 3 activity [goid GO:0004696] [evidence IGI,ISS] [pmid 10958669]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IGI,ISS] [pmid 10958669]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence IGI] [pmid 10958669]; go_process: response to stress [goid GO:0006950] [evidence IGI,IMP] [pmid 12529445] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 7.0E-67 /// hanks // 3.1.7 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; PCTAIRE1 // 9.0E-63 --- --- S0005488 // YGK3 SGDID:S0005488, Chr XV from 79478-78351, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017364 // cdna:Genscan chromosome:SGD1:XV:78351:79436:-1 // ensembl // 11 // --- /// GENEFINDER00000022663 // cdna:GeneFinder chromosome:SGD1:XV:78351:79046:-1 // ensembl // 11 // --- /// YOL128C // cdna:known chromosome:SGD1:XV:78351:79478:-1 gene:YOL128C // ensembl // 11 // --- --- No cerevisiae_gene 1.432847460893 1.22588730736443 1.15644885584901 1.00868247947603 1.10281004827371 Max fold change below threshold 4 1.432847460893 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769599_at YDR479C.S1 Peroxisomal integral membrane protein, involved in regulation of peroxisome size and number; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those mediated by Pex30p, Pex31p, and Pex32p 1.43272856350961 1197.73950195313 876.247467041016 PEX29 7031 // peroxisome organization and biogenesis // inferred from genetic interaction /// 7031 // peroxisome organization and biogenesis // inferred from direct assay /// 7031 // peroxisome organization and biogenesis // inferred from mutant phenotype 5778 // peroxisomal membrane // inferred from direct assay --- 848.042114257813 1180.46484375 1215.01416015625 904.452819824219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR479C /GEN=PEX29 /DB_XREF=GI:6320687 /SEG=NC_001136:-1415198,1416862 /DEF=Peroxisomal integral membrane protein, involved in regulation of peroxisome size and number; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those mediated by Pex30p, Pex31p, and Pex32p /NOTE=Pex29p; go_component: peroxisomal membrane [goid GO:0005778] [evidence IDA] [pmid 12707309]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence IDA,IGI,IMP] [pmid 12707309] --- --- --- --- --- S0002887 // span:146-165,172-194,265-284,291-308 // numtm:4 S0002887 // PEX29 SGDID:S0002887, Chr IV from 1416864-1415200, reverse complement, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023647 // cdna:GeneFinder chromosome:SGD1:IV:1415200:1416594:-1 // ensembl // 10 // --- /// GENSCAN00000025474 // cdna:Genscan chromosome:SGD1:IV:1415200:1416864:-1 // ensembl // 10 // --- /// YDR479C // cdna:known chromosome:SGD1:IV:1415200:1416864:-1 gene:YDR479C // ensembl // 10 // --- --- No cerevisiae_gene -1.20882387920811 1.39198846838298 1.39231406901323 1.43272856350961 1.06651875492737 Max fold change below threshold 4 1.43272856350961 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778170_at YER092W.S1 Protein that associates with the INO80 chromatin remodeling complex under low-salt conditions 1.43253574789728 785.057861328125 622.866912841797 IES5 --- 5634 // nucleus // inferred from direct assay --- 581.216918945313 832.614013671875 737.501708984375 664.516906738281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER092W /GEN=IES5 /DB_XREF=GI:6320938 /SEG=NC_001137:+342851,343228 /DEF=Protein that associates with the INO80 chromatin remodeling complex under low-salt conditions /NOTE=Ies5p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000894 // IES5 SGDID:S0000894, Chr V from 342851-343228, Verified ORF // sgd // 11 // --- /// GENSCAN00000016879 // cdna:Genscan chromosome:SGD1:V:342851:343228:1 // ensembl // 11 // --- /// GENEFINDER00000019755 // cdna:GeneFinder chromosome:SGD1:V:342851:343228:1 // ensembl // 11 // --- /// YER092W // cdna:known chromosome:SGD1:V:342851:343228:1 gene:YER092W // ensembl // 11 // --- --- No cerevisiae_gene -1.2376951295214 1.43253574789728 -1.0634392254427 1.26889236177546 1.14331996381683 Max fold change below threshold 4 1.43253574789728 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773180_at YBL107C.S1 Hypothetical protein 1.43248817018216 104.340156555176 120.598571777344 --- --- 5737 // cytoplasm // inferred from direct assay --- 126.111061096191 91.9177093505859 116.762603759766 115.086082458496 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL107C /DB_XREF=GI:6319361 /SEG=NC_001134:-9961,10551 /DEF=Hypothetical ORF /NOTE=Ybl107cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000203 // YBL107C SGDID:S0000203, Chr II from 10551-9961, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022170 // cdna:GeneFinder chromosome:SGD1:II:9961:10551:-1 // ensembl // 11 // --- /// YBL107C // cdna:known chromosome:SGD1:II:9961:10551:-1 gene:YBL107C // ensembl // 11 // --- --- No cerevisiae_gene -1.25024725650415 -1.37199960690042 1.43248817018216 -1.08006379641602 -1.09579767077111 Max fold change below threshold 4 1.43248817018216 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776013_at YKR014C.S1 GTPase, similar to Ypt51p and Ypt53p and to mammalian rab5; required for vacuolar protein sorting and endocytosis 1.43240454501512 1411.57818603516 1913.41912841797 YPT52 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6897 // endocytosis // inferred from mutant phenotype 5770 // late endosome // inferred from mutant phenotype 3924 // GTPase activity // inferred from mutant phenotype /// 3924 // GTPase activity // inferred from sequence similarity 1909.97717285156 1393.73315429688 1429.42321777344 1916.86108398438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR014C /GEN=YPT52 /DB_XREF=GI:6322866 /SEG=NC_001143:-465010,465714 /DEF=rab5-like GTPase involved in vacuolar protein sorting and endocytosis /NOTE=Ypt52p; go_component: late endosome [goid GO:0005770] [evidence IMP] [pmid 11872141]; go_function: GTPase activity [goid GO:0003924] [evidence IMP,ISS] [pmid 8163546]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 8163546]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 8163546] --- --- --- --- --- --- S0001722 // YPT52 SGDID:S0001722, Chr XI from 465714-465010, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018428 // cdna:Genscan chromosome:SGD1:XI:465010:465714:-1 // ensembl // 11 // --- /// GENEFINDER00000022936 // cdna:GeneFinder chromosome:SGD1:XI:465010:465714:-1 // ensembl // 11 // --- /// YKR014C // cdna:known chromosome:SGD1:XI:465010:465714:-1 gene:YKR014C // ensembl // 11 // --- --- No cerevisiae_gene -1.43240454501512 -1.37040377274739 1.12069402211979 -1.33618731604672 1.00360418502936 Max fold change below threshold 4 1.43240454501512 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771513_at YER089C.S1 Type 2C protein phosphatase; dephosphorylates Hog1p to limit maximal osmostress induced kinase activity; dephosphorylates Ire1p to downregulate the unfolded protein response; dephosphorylates Cdc28p; role in DNA checkpoint inactivation 1.43225991797111 876.118286132813 872.649780273438 PTC2 77 // DNA damage checkpoint // inferred from genetic interaction /// 79 // regulation of cyclin dependent protein kinase activity // inferred from mutant phenotype /// 79 // regulation of cyclin dependent protein kinase activity // inferred from physical interaction /// 82 // G1/S transition of mitotic cell cycle // inferred from genetic interaction /// 173 // inactivation of MAPK activity during osmolarity sensing // inferred from genetic interaction /// 173 // inactivation of MAPK activity during osmolarity sensing // inferred from mutant phenotype /// 173 // inactivation of MAPK activity during osmolarity sensing // inferred from direct assay /// 6470 // protein amino acid dephosphorylation // inferred from direct assay /// 6986 // response to unfolded protein // inferred from mutant phenotype /// 6986 // response to unfolded protein // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 15071 // protein phosphatase type 2C activity // inferred from direct assay 804.353454589844 600.193359375 1152.04321289063 940.946105957031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER089C /GEN=PTC2 /DB_XREF=GI:6320934 /SEG=NC_001137:-335942,337336 /DEF=Protein phosphatase type 2C /NOTE=Ptc2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: protein phosphatase type 2C activity [goid GO:0015071] [evidence IDA] [pmid 1058000]; go_process: DNA damage response, signal transduction resulting in cell cycle arrest [goid GO:0000077] [evidence IGI] [pmid 10747050]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IGI] [pmid 12518319]; go_process: inactivation of MAPK during osmolarity sensing [goid GO:0000173] [evidence IGI] [pmid 11113180]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence IDA] [pmid 1058000]; go_process: regulation of cyclin dependent protein kinase activity [goid GO:0000079] [evidence IMP,IPI] [pmid 1058000]; go_process: response to unfolded protein [goid GO:0006986] [evidence IMP,IPI] [pmid 9528768] --- --- --- --- scop // a.3.1.Two-domain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; Two-domain cytochrome c // 6.19999980926514 --- S0000891 // PTC2 SGDID:S0000891, Chr V from 337336-335942, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016876 // cdna:Genscan chromosome:SGD1:V:335942:337336:-1 // ensembl // 11 // --- /// GENEFINDER00000019764 // cdna:GeneFinder chromosome:SGD1:V:335942:337336:-1 // ensembl // 11 // --- /// YER089C // cdna:known chromosome:SGD1:V:335942:337336:-1 gene:YER089C // ensembl // 11 // --- --- No cerevisiae_gene -1.07675938290706 -1.340157204384 1.1678931947402 1.43225991797111 1.16981670257989 Max fold change below threshold 4 1.43225991797111 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770583_at YDR353W.S1 Cytoplasmic thioredoxin reductase, key regulatory enzyme that determines the redox state of the thioredoxin system, which acts as a disulfide reductase system and protects cells against both oxidative and reductive stress 1.43195827225236 1530.93402099609 1713.83673095703 TRR1 30503 // regulation of cell redox homeostasis // traceable author statement /// 30503 // regulation of cell redox homeostasis // inferred from mutant phenotype /// 30503 // regulation of cell redox homeostasis // inferred from direct assay 5737 // cytoplasm // traceable author statement 4791 // thioredoxin-disulfide reductase activity // traceable author statement 1725.70458984375 1452.60925292969 1609.2587890625 1701.96887207031 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR353W /GEN=TRR1 /DB_XREF=GI:6320560 /SEG=NC_001136:+1183288,1184247 /DEF=Thioredoxin reductase /NOTE=Trr1p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 10037727]; go_function: thioredoxin-disulfide reductase activity [goid GO:0004791] [evidence TAS] [pmid 11169101]; go_process: regulation of cell redox homeostasis [goid GO:0030503] [evidence TAS] [pmid 11169096]; go_process: regulation of cell redox homeostasis [goid GO:0030503] [evidence IDA,IMP] [pmid 9571241] --- --- --- --- --- --- S0002761 // TRR1 SGDID:S0002761, Chr IV from 1183290-1184249, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023579 // cdna:GeneFinder chromosome:SGD1:IV:1183290:1184249:1 // ensembl // 11 // --- /// GENSCAN00000025379 // cdna:Genscan chromosome:SGD1:IV:1183290:1184249:1 // ensembl // 11 // --- /// YDR353W // cdna:known chromosome:SGD1:IV:1183290:1184249:1 gene:YDR353W // ensembl // 11 // --- --- No cerevisiae_gene 1.43195827225236 -1.18800330258345 1.06567064007766 -1.07235989734696 -1.01394603518487 Max fold change below threshold 4 1.43195827225236 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772605_at YDL069C.S1 translational activator of cytochrome b 1.43162713696117 193.247520446777 198.580009460449 CBS1 6412 // protein biosynthesis // traceable author statement 5743 // mitochondrial inner membrane // traceable author statement /// 5761 // mitochondrial ribosome // inferred from physical interaction 8135 // translation factor activity, nucleic acid binding // inferred from genetic interaction /// 8135 // translation factor activity, nucleic acid binding // inferred from direct assay /// 8135 // translation factor activity, nucleic acid binding // inferred from mutant phenotype 191.231018066406 209.280090332031 177.214950561523 205.929000854492 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL069C /GEN=CBS1 /DB_XREF=GI:37362630 /SEG=NC_001136:-333121,333810 /DEF=translational activator of cytochrome b /NOTE=Cbs1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence TAS] [pmid 9162108]; go_function: translation factor activity, nucleic acid binding [goid GO:0008135] [evidence IDA,IGI,IMP] [pmid 7823946]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9162108] --- --- --- --- --- --- S0002227 // CBS1 SGDID:S0002227, Chr IV from 333810-333121, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025050 // cdna:Genscan chromosome:SGD1:IV:333121:333810:-1 // ensembl // 11 // --- /// YDL069C // cdna:known chromosome:SGD1:IV:333121:333810:-1 gene:YDL069C // ensembl // 11 // --- YDL068W // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene -1.16634968426468 1.09438360182425 1.43162713696117 -1.0790907734391 1.07685982607164 Max fold change below threshold 4 1.43162713696117 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775280_at YMR035W.S1 Catalytic subunit of the mitochondrial inner membrane peptidase complex, required for maturation of mitochondrial proteins of the intermembrane space; complex contains Imp1p and Imp2p (both catalytic subunits), and Som1p 1.43158389014154 519.577011108398 485.551406860352 IMP2 6627 // mitochondrial protein processing // inferred from direct assay 42720 // mitochondrial inner membrane peptidase complex // inferred from direct assay 4244 // mitochondrial inner membrane peptidase activity // inferred from direct assay /// 8233 // peptidase activity // inferred from direct assay 482.229522705078 458.617523193359 580.536499023438 488.873291015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR035W /GEN=IMP2 /DB_XREF=GI:6323678 /SEG=NC_001145:+341141,341674 /DEF=Catalytic subunit of the mitochondrial inner membrane peptidase complex, required for maturation of mitochondrial proteins of the intermembrane space; complex contains Imp1p and Imp2p (both catalytic subunits), and Som1p /NOTE=Imp2p; go_component: mitochondrial inner membrane peptidase complex [goid GO:0042720] [evidence IDA] [pmid 8266095]; go_function: peptidase activity [goid GO:0008233] [evidence IDA] [pmid 1991446]; go_process: mitochondrial processing [goid GO:0006627] [evidence IDA] [pmid 1991446] --- --- --- --- --- --- S0004638 // IMP2 SGDID:S0004638, Chr XIII from 341141-341674, Verified ORF // sgd // 11 // --- /// YMR035W // cdna:known chromosome:SGD1:XIII:341141:341674:1 gene:YMR035W // ensembl // 11 // --- --- No cerevisiae_gene -1.43158389014154 -1.05148516643522 1.34042666430068 1.20385930700987 1.01377719114599 Max fold change below threshold 4 1.43158389014154 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776023_at YHR042W.S1 NADP-cytochrome P450 reductase; involved in ergosterol biosynthesis; associated and coordinately regulated with Erg11p 1.43150478409794 2534.48767089844 3316.86376953125 NCP1 6696 // ergosterol biosynthesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5792 // microsome // inferred from direct assay 5489 // electron transporter activity // traceable author statement 3516.65576171875 2612.36059570313 2456.61474609375 3117.07177734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR042W /GEN=NCP1 /DB_XREF=GI:6321832 /SEG=NC_001140:+190535,192610 /DEF=NADP-cytochrome P450 reductase /NOTE=Ncp1p; go_component: microsome [goid GO:0005792] [evidence IDA] [pmid 9468503]; go_function: electron transporter activity [goid GO:0005489] [evidence TAS] [pmid 9468503]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence IMP] [pmid 9468503] --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 0.100000001490116 --- S0001084 // NCP1 SGDID:S0001084, Chr VIII from 190535-192610, Verified ORF // sgd // 11 // --- /// GENSCAN00000016589 // cdna:Genscan chromosome:SGD1:VIII:190535:192610:1 // ensembl // 11 // --- /// GENEFINDER00000020194 // cdna:GeneFinder chromosome:SGD1:VIII:190535:192610:1 // ensembl // 11 // --- /// YHR042W // cdna:known chromosome:SGD1:VIII:190535:192610:1 gene:YHR042W // ensembl // 11 // --- --- No cerevisiae_gene 1.03366096412566 -1.34616016161897 -1.30221464386687 -1.43150478409794 -1.12819210236972 Max fold change below threshold 4 1.43150478409794 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773823_at YMR193W.S1 Mitochondrial ribosomal protein of the large subunit 1.43130941669258 1067.98291015625 1143.13427734375 MRPL24 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 1103.91748046875 1021.62561035156 1114.34020996094 1182.35107421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR193W /GEN=MRPL24 /DB_XREF=GI:6323847 /SEG=NC_001145:+650035,650811 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl24p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0004806 // MRPL24 SGDID:S0004806, Chr XIII from 650035-650811, Verified ORF // sgd // 10 // --- /// GENSCAN00000018876 // cdna:Genscan chromosome:SGD1:XIII:650035:650811:1 // ensembl // 10 // --- /// YMR193W // cdna:known chromosome:SGD1:XIII:650035:650811:1 gene:YMR193W // ensembl // 10 // --- --- No cerevisiae_gene -1.43130941669258 -1.08054992874432 1.4292712211438 1.00944158388339 1.07105023259229 Max fold change below threshold 4 1.43130941669258 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776687_at YFL021W.S1 Transcriptional activator of genes involved in nitrogen catabolite repression, member of the GATA family of DNA binding proteins; activity and localization regulated by nitrogen limitation and Ure2p 1.43073949086832 871.377777099609 643.49951171875 GAT1 6367 // transcription initiation from RNA polymerase II promoter // inferred from direct assay /// 6808 // regulation of nitrogen utilization // inferred from mutant phenotype /// 45941 // positive regulation of transcription // inferred from direct assay 5634 // nucleus // traceable author statement 3704 // specific RNA polymerase II transcription factor activity // inferred from direct assay /// 16563 // transcriptional activator activity // traceable author statement /// 16563 // transcriptional activator activity // inferred from direct assay 631.918518066406 904.110778808594 838.644775390625 655.080505371094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL021W /GEN=GAT1 /DB_XREF=GI:14318498 /SEG=NC_001138:+95964,97496 /DEF=Transcriptional activator of genes involved in nitrogen catabolite repression, member of the GATA family of DNA binding proteins; activity and localization regulated by nitrogen limitation and Ure2p /NOTE=Gat1p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 12062797]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IDA] [pmid 8622686]; go_function: transcriptional activator activity [goid GO:0016563] [evidence TAS] [pmid 11133970]; go_process: regulation of nitrogen utilization [goid GO:0006808] [evidence IMP] [pmid 8622686]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence IDA] [pmid 8622686] --- --- --- --- --- --- S0001873 // GAT1 SGDID:S0001873, Chr VI from 95964-97496, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018516 // cdna:GeneFinder chromosome:SGD1:VI:96081:97496:1 // ensembl // 11 // --- /// GENSCAN00000023225 // cdna:Genscan chromosome:SGD1:VI:96081:97496:1 // ensembl // 11 // --- /// YFL021W // cdna:known chromosome:SGD1:VI:95964:97496:1 gene:YFL021W // ensembl // 11 // --- --- No cerevisiae_gene 1.19245282180565 1.43073949086832 -1.12078604552577 1.32714068572761 1.03665343971175 Max fold change below threshold 4 1.43073949086832 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770417_at YNL329C.S1 Peroxisomal membrane AAA-family ATPase peroxin required for peroxisome assembly, contains two 230 amino acid ATP-binding AAA cassettes, interacts with Pex1p 1.430287952781 262.398254394531 209.137657165527 PEX6 7031 // peroxisome organization and biogenesis // traceable author statement 5625 // soluble fraction // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5737 // cytoplasm // inferred from mutant phenotype /// 5777 // peroxisome // inferred from sequence similarity /// 5777 // peroxisome // inferred from mutant phenotype /// 5777 // peroxisome // inferred from direct assay 16887 // ATPase activity // inferred from sequence similarity 189.830856323242 271.512786865234 253.283721923828 228.444458007813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL329C /GEN=PEX6 /DB_XREF=GI:6324000 /SEG=NC_001146:-19541,22633 /DEF=Required for peroxisome assembly /NOTE=Pex6p; go_component: peroxisome [goid GO:0005777] [evidence ISS] [pmid 9588209]; go_function: ATPase activity [goid GO:0016887] [evidence ISS] [pmid 8241279]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence TAS] --- --- --- --- --- --- S0005273 // PEX6 SGDID:S0005273, Chr XIV from 22633-19541, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019781 // cdna:Genscan chromosome:SGD1:XIV:19541:22390:-1 // ensembl // 11 // --- /// GENEFINDER00000020469 // cdna:GeneFinder chromosome:SGD1:XIV:19541:21868:-1 // ensembl // 11 // --- /// YNL329C // cdna:known chromosome:SGD1:XIV:19541:22633:-1 gene:YNL329C // ensembl // 11 // --- --- No cerevisiae_gene -1.26847835983874 1.430287952781 1.39227482576419 1.33426001878503 1.20341056471251 Max fold change below threshold 4 1.430287952781 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779196_at YDR394W.S1 One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates; substrate of N-acetyltransferase B 1.43022871293544 2278.95556640625 1755.81262207031 RPT3 6511 // ubiquitin-dependent protein catabolism // traceable author statement 8540 // proteasome regulatory particle, base subcomplex (sensu Eukaryota) // inferred from direct assay /// 8540 // proteasome regulatory particle, base subcomplex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement /// 16887 // ATPase activity // traceable author statement /// 16887 // ATPase activity // inferred from direct assay 1740.86865234375 2068.07080078125 2489.84033203125 1770.75659179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR394W /GEN=RPT3 /DB_XREF=GI:6320602 /SEG=NC_001136:+1261669,1262955 /DEF=probable 26S protease subunit and member of the CDC48/PAS1/SEC18 family of ATPases /NOTE=Rpt3p; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence TAS] [pmid 9697412]; go_component: proteasome regulatory particle, base subcomplex (sensu Eukarya) [goid GO:0008540] [evidence IDA] [pmid 11742986]; go_function: ATPase activity [goid GO:0016887] [evidence TAS] [pmid 9697412]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 9697412]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 9697412] --- --- --- --- --- --- S0002802 // RPT3 SGDID:S0002802, Chr IV from 1261671-1262957, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023535 // cdna:GeneFinder chromosome:SGD1:IV:1261671:1262957:1 // ensembl // 11 // --- /// GENSCAN00000025413 // cdna:Genscan chromosome:SGD1:IV:1261671:1262957:1 // ensembl // 11 // --- /// YDR394W // cdna:known chromosome:SGD1:IV:1261671:1262957:1 gene:YDR394W // ensembl // 11 // --- --- No cerevisiae_gene -1.10501102167678 1.1879533806281 -1.05346888700965 1.43022871293544 1.01716840579149 Max fold change below threshold 4 1.43022871293544 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769628_at YOR165W.S1 Protein of unknown function, contains two predicted GTP-binding motifs GXXXXGKS and DXXG near the N-terminus, homolog of the Arabidopsis gene RHD3 (Root Hair Defective) 1.42968421593578 1405.3916015625 1126.56683349609 SEY1 16044 // membrane organization and biogenesis // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay --- 1083.17163085938 1262.18981933594 1548.59338378906 1169.96203613281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR165W /GEN=SEY1 /DB_XREF=GI:6324739 /SEG=NC_001147:+644566,646896 /DEF=Synthetic Enhancement with YOP1 /NOTE=Sey1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: membrane organization and biogenesis [goid GO:0016044] [evidence IGI] [pmid 12427979] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 0.680000007152557 S0005691 // span:682-699,706-728 // numtm:2 S0005691 // SEY1 SGDID:S0005691, Chr XV from 644566-646896, Verified ORF // sgd // 11 // --- /// GENSCAN00000017588 // cdna:Genscan chromosome:SGD1:XV:644566:646914:1 // ensembl // 11 // --- /// GENEFINDER00000022798 // cdna:GeneFinder chromosome:SGD1:XV:644566:646914:1 // ensembl // 11 // --- /// YOR165W // cdna:known chromosome:SGD1:XV:644566:646896:1 gene:YOR165W // ensembl // 11 // --- --- No cerevisiae_gene -1.0195671677325 1.16527222775815 1.35774593157798 1.42968421593578 1.08012618019231 Max fold change below threshold 4 1.42968421593578 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776948_at YGL037C.S1 Nicotinamidase that converts nicotinamide to nicotinic acid as part of the NAD(+) salvage pathway, required for life span extension by calorie restriction; PNC1 expression responds to all known stimuli that extend replicative life span 1.42966355872811 9974.57568359375 7849.08056640625 PNC1 183 // chromatin silencing at ribosomal DNA // inferred from mutant phenotype /// 1302 // replicative cell aging // inferred from mutant phenotype /// 1302 // replicative cell aging // inferred from expression pattern /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 19358 // nicotinate nucleotide salvage // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5777 // peroxisome // inferred from direct assay 8936 // nicotinamidase activity // inferred from sequence similarity 9168.80859375 13108.3115234375 6840.83984375 6529.3525390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL037C /GEN=PNC1 /DB_XREF=GI:6321401 /SEG=NC_001139:-427301,427951 /DEF=NAD(+) salvage pathway gene /NOTE=Pnc1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12736687]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12736687]; go_component: peroxisome [goid GO:0005777] [evidence IDA] [pmid 12736687]; go_function: nicotinamidase activity [goid GO:0008936] [evidence ISS] [pmid 11901108]; go_process: cell aging [goid GO:0007569] [evidence IEP,IMP] [pmid 12736687]; go_process: chromatin silencing at ribosomal DNA [goid GO:0000183] [evidence IMP] [pmid 11901108]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 11901108]; go_process: nicotinate nucleotide salvage [goid GO:0019358] [evidence ISS] [pmid 11901108] --- --- --- --- --- --- S0003005 // PNC1 SGDID:S0003005, Chr VII from 427953-427303, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019316 // cdna:Genscan chromosome:SGD1:VII:427303:427953:-1 // ensembl // 11 // --- /// GENEFINDER00000021485 // cdna:GeneFinder chromosome:SGD1:VII:427303:427953:-1 // ensembl // 11 // --- /// YGL037C // cdna:known chromosome:SGD1:VII:427303:427953:-1 gene:YGL037C // ensembl // 11 // --- --- No cerevisiae_gene -1.35993657493802 1.42966355872811 -1.25382997082922 -1.34030452446959 -1.40424468412399 Max fold change below threshold 4 1.42966355872811 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771313_at YML075C.S1 One of two isozymes of HMG-CoA reductase that catalyzes the conversion of HMG-CoA to mevalonate, which is a rate-limiting step in sterol biosynthesis; localizes to the nuclear envelope; overproduction induces the formation of karmellae 1.42951854152137 4977.64501953125 4445.78979492188 HMG1 6696 // ergosterol biosynthesis // traceable author statement 5635 // nuclear membrane // inferred from direct assay /// 5759 // mitochondrial matrix // traceable author statement /// 5789 // endoplasmic reticulum membrane // inferred from direct assay 4420 // hydroxymethylglutaryl-CoA reductase (NADPH) activity // traceable author statement 4634.2607421875 5714.8974609375 4240.392578125 4257.31884765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML075C /GEN=HMG1 /DB_XREF=GI:6323565 /SEG=NC_001145:-115734,118898 /DEF=One of two isozymes of HMG-CoA reductase that catalyzes the conversion of HMG-CoA to mevalonate, which is a rate-limiting step in sterol biosynthesis; localizes to the nuclear envelope; overproduction induces the formation of karmellae /NOTE=Hmg1p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 8744950]; go_component: mitochondrial matrix [goid GO:0005759] [evidence TAS]; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 8744950]; go_function: hydroxymethylglutaryl-CoA reductase (NADPH) activity [goid GO:0004420] [evidence TAS]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence TAS] --- --- --- --- --- S0004540 // span:27-49,190-209,216-238,248-265,332-354,402-424,499-521 // numtm:7 S0004540 // HMG1 SGDID:S0004540, Chr XIII from 118898-115734, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018654 // cdna:Genscan chromosome:SGD1:XIII:115734:118898:-1 // ensembl // 11 // --- /// GENEFINDER00000021904 // cdna:GeneFinder chromosome:SGD1:XIII:115734:118868:-1 // ensembl // 11 // --- /// YML075C // cdna:known chromosome:SGD1:XIII:115734:118898:-1 gene:YML075C // ensembl // 11 // --- --- No cerevisiae_gene -1.42951854152137 1.23318427228588 -1.10986186725018 -1.09288483478967 -1.08853973780676 Max fold change below threshold 4 1.42951854152137 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778564_at YPL158C.S1 Hypothetical protein 1.42950001087316 695.031982421875 892.345733642578 --- --- 5935 // bud neck // inferred from direct assay --- 758.298889160156 820.9462890625 569.11767578125 1026.392578125 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL158C /GEN=CDC60 /DB_XREF=GI:6325099 /SEG=NC_001148:-252033,254309 /DEF=Hypothetical ORF /NOTE=Ypl158cp; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006079 // YPL158C SGDID:S0006079, Chr XVI from 254309-252033, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020861 // cdna:GeneFinder chromosome:SGD1:XVI:252033:253004:-1 // ensembl // 11 // --- /// YPL158C // cdna:known chromosome:SGD1:XVI:252033:254309:-1 gene:YPL158C // ensembl // 11 // --- --- No cerevisiae_gene 1.14530388799264 1.08261570839399 -1.42950001087316 -1.33241141758461 1.35354619767644 Max fold change below threshold 4 1.42950001087316 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776531_at YDR074W.S1 Phosphatase subunit of the trehalose-6-phosphate synthase/phosphatase complex, which synthesizes the storage carbohydrate trehalose; expression is induced by stress conditions and repressed by the Ras-cAMP pathway 1.42949039158082 6122.81372070313 5399.3095703125 TPS2 5992 // trehalose biosynthesis // inferred from mutant phenotype /// 6950 // response to stress // inferred from direct assay /// 6950 // response to stress // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5946 // alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) // inferred from mutant phenotype /// 5946 // alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) // inferred from genetic interaction /// 5946 // alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) // inferred from physical interaction 4805 // trehalose-phosphatase activity // inferred from mutant phenotype 6063.552734375 7455.8642578125 4789.76318359375 4735.06640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR074W /GEN=TPS2 /DB_XREF=GI:6320279 /SEG=NC_001136:+593888,596578 /DEF=Trehalose-6-phosphate phosphatase /NOTE=Tps2p; go_component: alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) [goid GO:0005946] [evidence IGI,IMP,IPI] [pmid 9837904]; go_function: trehalose-phosphatase activity [goid GO:0004805] [evidence IMP] [pmid 8444170]; go_process: carbohydrate metabolism [goid GO:0005975] [evidence IDA] [pmid 8444170]; go_process: response to stress [goid GO:0006950] [evidence IDA] [pmid 8444170] --- --- --- --- --- --- S0002481 // TPS2 SGDID:S0002481, Chr IV from 593889-596579, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023511 // cdna:GeneFinder chromosome:SGD1:IV:593889:596579:1 // ensembl // 11 // --- /// GENSCAN00000025151 // cdna:Genscan chromosome:SGD1:IV:593889:596579:1 // ensembl // 11 // --- /// YDR074W // cdna:known chromosome:SGD1:IV:593889:596579:1 gene:YDR074W // ensembl // 11 // --- --- No cerevisiae_gene -1.42949039158082 1.2296197599708 -1.29246040237498 -1.26593998533045 -1.28056339956953 Max fold change below threshold 4 1.42949039158082 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776357_at YPL243W.S1 Core component of the signal recognition particle (SRP) ribonucleoprotein (RNP) complex that functions in targeting nascent secretory proteins to the endoplasmic reticulum (ER) membrane 1.4294661228309 861.321716308594 1202.02941894531 SRP68 6617 // SRP-dependent cotranslational protein-membrane targeting, signal sequence recognition // inferred from curator /// 45047 // protein-ER targeting // inferred from physical interaction 5786 // signal recognition particle (sensu Eukaryota) // inferred from direct assay 5048 // signal sequence binding // inferred from physical interaction 1223.33386230469 866.845703125 855.797729492188 1180.72497558594 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL243W /GEN=SRP68 /DB_XREF=GI:6325013 /SEG=NC_001148:+88517,90316 /DEF=part of the signal recognition particle (SRP) ribonucleoprotein (RNP) complex that functions in protein targeting to the endoplasmic reticulum (ER) membrane /NOTE=Srp68p; go_component: signal recognition particle [goid GO:0005786] [evidence IDA] [pmid 7925282]; go_function: signal sequence binding [goid GO:0005048] [evidence IPI] [pmid 7925282]; go_process: protein-ER targeting [goid GO:0045047] [evidence IPI] [pmid 7925282] --- --- --- --- scop // a.4.1.AraC type transcriptional activator // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; AraC type transcriptional activator // 3.59999990463257 --- S0006164 // SRP68 SGDID:S0006164, Chr XVI from 88517-90316, Verified ORF // sgd // 11 // --- /// GENSCAN00000016999 // cdna:Genscan chromosome:SGD1:XVI:88517:90316:1 // ensembl // 11 // --- /// GENEFINDER00000020860 // cdna:GeneFinder chromosome:SGD1:XVI:88517:90316:1 // ensembl // 11 // --- /// YPL243W // cdna:known chromosome:SGD1:XVI:88517:90316:1 gene:YPL243W // ensembl // 11 // --- --- No cerevisiae_gene 1.12918778739938 -1.41124753562778 -1.16905200356401 -1.4294661228309 -1.03608705464844 Max fold change below threshold 4 1.4294661228309 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776317_at YKR006C.S1 Mitochondrial ribosomal protein of the large subunit, not essential for mitochondrial translation 1.42905967893501 669.991455078125 790.292816162109 MRPL13 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 764.476928710938 663.07275390625 676.91015625 816.108703613281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR006C /GEN=MRPL13 /DB_XREF=GI:37362673 /SEG=NC_001143:-450066,450860 /DEF=Mitochondrial ribosomal protein of the large subunit, not essential for mitochondrial translation /NOTE=Mrpl13p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0001714 // MRPL13 SGDID:S0001714, Chr XI from 450860-450066, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018422 // cdna:Genscan chromosome:SGD1:XI:450066:450893:-1 // ensembl // 10 // --- /// GENEFINDER00000023107 // cdna:GeneFinder chromosome:SGD1:XI:450066:450860:-1 // ensembl // 10 // --- /// YKR006C // cdna:known chromosome:SGD1:XI:450066:450860:-1 gene:YKR006C // ensembl // 10 // --- --- No cerevisiae_gene 1.1936460844107 -1.15293069155278 1.42905967893501 -1.12936247395969 1.06753869601978 Max fold change below threshold 4 1.42905967893501 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773875_at YDL024C.S1 Protein of unknown function, involved in invasive and pseudohyphal growth 1.42900999723931 234.305137634277 240.99641418457 DIA3 1403 // invasive growth (sensu Saccharomyces) // inferred from genetic interaction /// 7124 // pseudohyphal growth // inferred from mutant phenotype 9277 // cell wall (sensu Fungi) // inferred from direct assay 3993 // acid phosphatase activity // inferred from sequence similarity 210.363861083984 221.602935791016 247.007339477539 271.628967285156 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL024C /GEN=DIA3 /DB_XREF=GI:6320180 /SEG=NC_001136:-408448,409854 /DEF=Protein of unknown function, involved in invasive and pseudohyphal growth /NOTE=Dia3p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 11935221]; go_function: acid phosphatase activity [goid GO:0003993] [evidence ISS] [pmid 11063681]; go_process: invasive growth (sensu Saccharomyces) [goid GO:0001403] [evidence IGI] [pmid 11063681]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 11063681] --- --- --- --- --- --- S0002182 // DIA3 SGDID:S0002182, Chr IV from 409854-408448, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025082 // cdna:Genscan chromosome:SGD1:IV:408448:409854:-1 // ensembl // 11 // --- /// YDL024C // cdna:known chromosome:SGD1:IV:408448:409854:-1 gene:YDL024C // ensembl // 11 // --- --- No cerevisiae_gene -1.09787761326556 1.05342683219978 1.42900999723931 1.17419093852306 1.2912339880314 Max fold change below threshold 4 1.42900999723931 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773840_at YOL076W.S1 Non-catalytic subunit of the NatB N-terminal acetyltransferase, which catalyzes acetylation of the amino-terminal methionine residues of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met; involved in mitochondrial inheritance and actin assembly 1.42876376015469 78.7445106506348 69.8301429748535 MDM20 1 // mitochondrion inheritance // inferred from genetic interaction /// 1 // mitochondrion inheritance // inferred from mutant phenotype /// 7010 // cytoskeleton organization and biogenesis // inferred from mutant phenotype /// 17196 // N-terminal peptidyl-methionine acetylation // inferred from genetic interaction /// 17196 // N-terminal peptidyl-methionine acetylation // inferred from mutant phenotype 5622 // intracellular // inferred from direct assay 4596 // peptide alpha-N-acetyltransferase activity // inferred from mutant phenotype /// 4596 // peptide alpha-N-acetyltransferase activity // inferred from physical interaction 72.4222946166992 86.013916015625 71.4751052856445 67.2379913330078 0.000732421991415322 0.00195312988944352 0.00292969006113708 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL076W /GEN=MDM20 /DB_XREF=GI:6324497 /SEG=NC_001147:+187023,189413 /DEF=Subunit of the NatB N-terminal acetyltransferase, which catalyzes acetylation of the amino-terminal methionine residues of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met /NOTE=Mdm20p; go_component: intracellular [goid GO:0005622] [evidence IDA] [pmid 9105043]; go_function: peptide alpha-N-acetyltransferase activity [goid GO:0004596] [evidence IMP,IPI] [pmid 12783868]; go_process: N-terminal peptidyl-methionine acetylation [goid GO:0017196] [evidence IGI,IMP] [pmid 12783868]; go_process: cytoskeleton organization and biogenesis [goid GO:0007010] [evidence IMP] [pmid 9105043]; go_process: mitochondrion inheritance [goid GO:0000001] [evidence IGI,IMP] [pmid 9105043] --- --- --- --- --- --- S0005436 // MDM20 SGDID:S0005436, Chr XV from 187023-189413, Verified ORF // sgd // 11 // --- /// GENSCAN00000017405 // cdna:Genscan chromosome:SGD1:XV:187023:189413:1 // ensembl // 11 // --- /// YOL076W // cdna:known chromosome:SGD1:XV:187023:189413:1 gene:YOL076W // ensembl // 11 // --- --- No cerevisiae_gene 1.42876376015469 1.18767178630366 -1.36807877914066 -1.01325201729007 -1.07710377988562 Max fold change below threshold 4 1.42876376015469 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772130_at YDR155C.S1 Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds the drug cyclosporin A 1.42869649650999 8894.24365234375 7207.63061523438 CPR1 19538 // protein metabolism // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype 118 // histone deacetylase complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay 3755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay 8479.87109375 11408.9990234375 6379.48828125 5935.39013671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR155C /GEN=CPR1 /DB_XREF=GI:6320359 /SEG=NC_001136:-768506,768994 /DEF=Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds the drug cyclosporin A /NOTE=Cpr1p; go_component: histone deacetylase complex [goid GO:0000118] [evidence IPI] [pmid 11711434]; go_function: peptidyl-prolyl cis-trans isomerase activity [goid GO:0003755] [evidence IDA] [pmid 2687115]; go_process: protein metabolism [goid GO:0019538] [evidence IMP] [pmid 12242280] --- --- --- --- --- --- S0002562 // CPR1 SGDID:S0002562, Chr IV from 768995-768507, reverse complement, Verified ORF // sgd // 11 // --- /// X17505 // Yeast mRNA for cyclophilin. // gb // 11 // --- /// GENEFINDER00000023531 // cdna:GeneFinder chromosome:SGD1:IV:768507:768995:-1 // ensembl // 11 // --- /// GENSCAN00000025212 // cdna:Genscan chromosome:SGD1:IV:768507:768995:-1 // ensembl // 11 // --- /// YDR155C // cdna:known chromosome:SGD1:IV:768507:768995:-1 gene:YDR155C // ensembl // 11 // --- YDR154C // ensembl // 3 // Cross Hyb Matching Probes No cerevisiae_gene -1.37518515392184 1.34542128026526 -1.2543696027085 -1.32924001423018 -1.42869649650999 Max fold change below threshold 4 1.42869649650999 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772087_at YBR255W.S1 Protein of unknown function, required for normal growth rate at 15 degrees C; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.42830407094281 685.756195068359 702.251373291016 --- --- 5737 // cytoplasm // inferred from direct assay --- 663.868225097656 557.517639160156 813.994750976563 740.634521484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR255W /GEN=TRS20 /DB_XREF=GI:6319732 /SEG=NC_001134:+724413,726497 /DEF=Protein of unknown function, required for normal growth rate at 15 degrees C; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ybr255wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000459 // span:653-675 // numtm:1 S0000459 // YBR255W SGDID:S0000459, Chr II from 724451-726535, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022163 // cdna:GeneFinder chromosome:SGD1:II:724451:726535:1 // ensembl // 11 // --- /// GENSCAN00000021344 // cdna:Genscan chromosome:SGD1:II:725234:726535:1 // ensembl // 11 // --- /// YBR255W // cdna:known chromosome:SGD1:II:724451:726535:1 gene:YBR255W // ensembl // 11 // --- --- No cerevisiae_gene -1.40359708614175 -1.19075734733291 1.42830407094281 1.22613904417073 1.11563484059721 Max fold change below threshold 4 1.42830407094281 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776554_at YDL154W.S1 Protein of the MutS family, forms a dimer with Msh4p that facilitates crossovers between homologs during meiosis; msh5-Y823H mutation confers tolerance to DNA alkylating agents; homologs present in C. elegans and humans 1.42777973517182 64.7351837158203 93.3526878356934 MSH5 7131 // meiotic recombination // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 81.6060180664063 66.1652755737305 63.3050918579102 105.09935760498 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL154W /GEN=MSH5 /DB_XREF=GI:6320047 /SEG=NC_001136:+178335,181040 /DEF=dispensable for DNA repair and meiotic intrachromosomal reciprocal recombination, required for full reciprocal recombination between homologs, and spore viability /NOTE=Msh5p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiotic recombination [goid GO:0007131] [evidence IMP] [pmid 9374523] --- --- --- --- --- --- S0002313 // MSH5 SGDID:S0002313, Chr IV from 178335-181040, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023648 // cdna:GeneFinder chromosome:SGD1:IV:178371:181040:1 // ensembl // 11 // --- /// GENSCAN00000024985 // cdna:Genscan chromosome:SGD1:IV:178371:181040:1 // ensembl // 11 // --- /// YDL154W // cdna:known chromosome:SGD1:IV:178335:181040:1 gene:YDL154W // ensembl // 11 // --- --- No cerevisiae_gene -1.29989136647221 -1.23336625380589 -1.42777973517182 -1.28909090361282 1.28788734085097 Max fold change below threshold 4 1.42777973517182 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770697_at YOR090C.S1 Mitochondrially localized type 2C protein phosphatase; contains Mg2+/Mn2+-dependent casein phosphatase activity in vitro but in vivo substrates are unknown 1.42739962210702 773.343566894531 779.6513671875 PTC5 --- 5739 // mitochondrion // inferred from direct assay 15071 // protein phosphatase type 2C activity // inferred from direct assay /// 15071 // protein phosphatase type 2C activity // inferred from sequence similarity 764.627502441406 762.093505859375 784.593627929688 794.675231933594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR090C /GEN=PTC5 /DB_XREF=GI:6324664 /SEG=NC_001147:-491124,492842 /DEF=Phosphatase type Two C /NOTE=Ptc5p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein phosphatase type 2C activity [goid GO:0015071] [evidence IDA,ISS] [pmid 10580002]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005616 // PTC5 SGDID:S0005616, Chr XV from 492842-491124, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017529 // cdna:Genscan chromosome:SGD1:XV:491124:492539:-1 // ensembl // 11 // --- /// GENEFINDER00000022917 // cdna:GeneFinder chromosome:SGD1:XV:491124:492842:-1 // ensembl // 11 // --- /// YOR090C // cdna:known chromosome:SGD1:XV:491124:492842:-1 gene:YOR090C // ensembl // 11 // --- --- No cerevisiae_gene -1.42739962210702 -1.00332504681191 1.21128140720966 1.02611222513515 1.03929721255938 Max fold change below threshold 4 1.42739962210702 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777493_at YNL127W.S1 Protein involved in G1 cell cycle arrest in response to pheromone, in a pathway different from the Far1p-dependent pathway; interacts with Far3p, Far7p, Far8p, Far9p, and Far10p 1.42719225994852 535.884368896484 463.102569580078 FAR11 751 // cell cycle arrest in response to pheromone // inferred from mutant phenotype /// 751 // cell cycle arrest in response to pheromone // inferred from physical interaction --- --- 412.083923339844 483.645751953125 588.122985839844 514.121215820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL127W /GEN=FAR11 /DB_XREF=GI:6324202 /SEG=NC_001146:+383987,386848 /DEF=Protein involved in G1 cell cycle arrest in response to pheromone, in a pathway different from the Far1p-dependent pathway; interacts with Far3p, Far7p, Far8p, Far9p, and Far10p /NOTE=Far11p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell cycle arrest in response to pheromone [goid GO:0000751] [evidence IMP,IPI] [pmid 12588993] --- --- --- --- --- --- S0005071 // FAR11 SGDID:S0005071, Chr XIV from 383987-386848, Verified ORF // sgd // 11 // --- /// GENSCAN00000019931 // cdna:Genscan chromosome:SGD1:XIV:383987:386848:1 // ensembl // 11 // --- /// GENEFINDER00000020531 // cdna:GeneFinder chromosome:SGD1:XIV:383987:386848:1 // ensembl // 11 // --- /// YNL127W // cdna:known chromosome:SGD1:XIV:383987:386848:1 gene:YNL127W // ensembl // 11 // --- --- No cerevisiae_gene -1.23843672191673 1.17365838500393 1.41959537489208 1.42719225994852 1.24761289315409 Max fold change below threshold 4 1.42719225994852 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773631_at YOL026C.S1 Mitochondrial outer membrane protein, required for assembly of the translocase of the outer membrane (TOM) complex and thereby for mitochondrial protein import; N terminus is exposed to the cytosol: transmembrane segment is highly conserved 1.42668322479814 1949.16448974609 1440.88671875 MIM1 6461 // protein complex assembly // inferred from mutant phenotype /// 6626 // protein-mitochondrial targeting // inferred from mutant phenotype 5741 // mitochondrial outer membrane // inferred from direct assay /// 31307 // integral to mitochondrial outer membrane // inferred from direct assay --- 1407.70227050781 2008.34521484375 1889.98376464844 1474.07116699219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL026C /GEN=MDM38 /DB_XREF=GI:6324547 /SEG=NC_001147:-274012,274353 /DEF=Protein required for cell viability /NOTE=Yol026cp --- --- --- --- --- --- S0005386 // MIM1 SGDID:S0005386, Chr XV from 274353-274012, reverse complement, Verified ORF // sgd // 11 // --- /// YOL026C // cdna:known chromosome:SGD1:XV:274012:274353:-1 gene:YOL026C // ensembl // 11 // --- --- No cerevisiae_gene -1.17596136873255 1.42668322479814 1.09756321965068 1.3426019153657 1.04714696983506 Max fold change below threshold 4 1.42668322479814 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779367_at YOR194C.S1 Transcription factor IIA, large chain 1.42620209034619 746.046081542969 595.347717285156 TOA1 6367 // transcription initiation from RNA polymerase II promoter // inferred from direct assay 5672 // transcription factor TFIIA complex // inferred from direct assay 16251 // general RNA polymerase II transcription factor activity // inferred from direct assay 587.510620117188 654.183288574219 837.908874511719 603.184814453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR194C /GEN=TOA1 /DB_XREF=GI:6324768 /SEG=NC_001147:-711683,712543 /DEF=Transcription factor IIA, large chain /NOTE=Toa1p; go_component: transcription factor TFIIA complex [goid GO:0005672] [evidence IDA] [pmid 7862117]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence IDA] [pmid 7862117]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence IDA] [pmid 7862117] --- --- --- --- --- --- S0005720 // TOA1 SGDID:S0005720, Chr XV from 712543-711683, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017613 // cdna:Genscan chromosome:SGD1:XV:711683:712543:-1 // ensembl // 11 // --- /// GENEFINDER00000022827 // cdna:GeneFinder chromosome:SGD1:XV:711683:712543:-1 // ensembl // 11 // --- /// YOR194C // cdna:known chromosome:SGD1:XV:711683:712543:-1 gene:YOR194C // ensembl // 11 // --- --- No cerevisiae_gene -1.18177011121987 1.11348334170322 1.04046126576419 1.42620209034619 1.02667899744997 Max fold change below threshold 4 1.42620209034619 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779247_at YAL016W.S1 Regulatory subunit A of the heterotrimeric protein phosphatase 2A, which also contains regulatory subunit Cdc55p and either catalytic subunit Pph21p or Pph22p; required for cell morphogenesis and for transcription by RNA polymerase III 1.42542272050451 4545.2529296875 3295.27038574219 TPD3 6412 // protein biosynthesis // inferred from mutant phenotype /// 6470 // protein amino acid dephosphorylation // traceable author statement /// 7015 // actin filament organization // traceable author statement /// 7094 // mitotic spindle checkpoint // inferred from mutant phenotype /// 7117 // budding cell bud growth // traceable author statement 159 // protein phosphatase type 2A complex // traceable author statement /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5816 // spindle pole body // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay 158 // protein phosphatase type 2A activity // traceable author statement 3484.19189453125 4966.4462890625 4124.0595703125 3106.34887695313 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL016W /GEN=TPD3 /DB_XREF=GI:6319303 /SEG=NC_001133:+124882,126789 /DEF=protein phosphatase 2A regulatory subunit A /NOTE=Tpd3p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 12388751]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 12388751]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12388751]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12388751]; go_component: protein phosphatase type 2A complex [goid GO:0000159] [evidence TAS] [pmid 10329624]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 12388751]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 12388751]; go_function: protein phosphatase type 2A activity [goid GO:0000158] [evidence TAS] [pmid 10329624]; go_process: actin filament organization [goid GO:0007015] [evidence TAS] [pmid 9001215]; go_process: bud growth [goid GO:0007117] [evidence TAS] [pmid 9001215]; go_process: mitotic spindle checkpoint [goid GO:0007094] [evidence IMP] [pmid 9001215]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence TAS] [pmid 9001215]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP] [pmid 10329624] --- --- --- --- --- --- S0000014 // TPD3 SGDID:S0000014, Chr I from 124880-126787, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018197 // cdna:GeneFinder chromosome:SGD1:I:124880:126787:1 // ensembl // 11 // --- /// GENSCAN00000020366 // cdna:Genscan chromosome:SGD1:I:124880:126787:1 // ensembl // 11 // --- /// YAL016W // cdna:known chromosome:SGD1:I:124880:126787:1 gene:YAL016W // ensembl // 11 // --- --- No cerevisiae_gene -1.36899133073679 1.42542272050451 -1.04976162494456 1.18364880441447 -1.12163573138273 Max fold change below threshold 4 1.42542272050451 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776079_at YGR241C.S1 Protein involved in clathrin cage assembly; binds Pan1p and clathrin; homologous to Yap1801p, member of the AP180 protein family 1.42505639013925 4042.52917480469 3046.45666503906 YAP1802 6897 // endocytosis // inferred from physical interaction /// 6897 // endocytosis // inferred from sequence similarity 30479 // actin cortical patch // inferred from direct assay 30276 // clathrin binding // traceable author statement 3153.6015625 4494.06005859375 3590.99829101563 2939.31176757813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR241C /GEN=YAP1802 /DB_XREF=GI:6321681 /SEG=NC_001139:-974879,976585 /DEF=Yeast Assembly Polypeptide, member of AP180 protein family, binds Pan1p and clathrin /NOTE=Yap1802p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10652251]; go_function: clathrin binding [goid GO:0030276] [evidence TAS] [pmid 12461563]; go_process: endocytosis [goid GO:0006897] [evidence IPI,ISS] [pmid 9531549] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 3.59999990463257 --- S0003473 // YAP1802 SGDID:S0003473, Chr VII from 976586-974880, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019526 // cdna:Genscan chromosome:SGD1:VII:974880:976538:-1 // ensembl // 11 // --- /// GENEFINDER00000021399 // cdna:GeneFinder chromosome:SGD1:VII:974880:976538:-1 // ensembl // 11 // --- /// YGR241C // cdna:known chromosome:SGD1:VII:974880:976586:-1 gene:YGR241C // ensembl // 11 // --- --- No cerevisiae_gene 1.29608136530405 1.42505639013925 -1.2717130611182 1.13869752403626 -1.07290475181489 Max fold change below threshold 4 1.42505639013925 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771073_at YIR030C.S1 Protein of unknown function, expression is sensitive to nitrogen catabolite repression and regulated by Dal80p; contains transmembrane domain 1.42501581054796 25.3243503570557 27.4741086959839 DCG1 6807 // nitrogen compound metabolism // inferred from expression pattern --- --- 23.6420154571533 27.3264846801758 23.3222160339355 31.3062019348145 0.030273400247097 0.111571997404099 0.0561522990465164 0.0239257998764515 P A M P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR030C /GEN=DCG1 /DB_XREF=GI:6322221 /SEG=NC_001141:-412033,412767 /DEF=Protein of unknown function, expression is sensitive to nitrogen catabolite repression and regulated by Dal80p; contains transmembrane domain /NOTE=Dcg1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: nitrogen metabolism [goid GO:0006807] [evidence IEP] [pmid 1916277] --- --- --- --- --- --- S0001469 // DCG1 SGDID:S0001469, Chr IX from 412767-412033, reverse complement, Verified ORF // sgd // 11 // --- /// YIR030C // cdna:known chromosome:SGD1:IX:412033:412767:-1 gene:YIR030C // ensembl // 11 // --- --- No cerevisiae_gene -1.42501581054796 1.1558441254596 1.32222295279029 -1.01371222283305 1.3241765276548 Max fold change below threshold 4 1.42501581054796 Max fold change below threshold PPAPMP No 4 0 PAMP 1 2 1 No No 1 < x = 2
1772969_at YPL168W.S1 Hypothetical protein 1.42496778639501 1000.81253051758 772.993743896484 --- --- 5739 // mitochondrion // inferred from direct assay --- 747.791198730469 1065.57836914063 936.046691894531 798.1962890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL168W /GEN=MEX67 /DB_XREF=GI:6325089 /SEG=NC_001148:+231216,232508 /DEF=Hypothetical ORF /NOTE=Ypl168wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0006089 // span:403-420 // numtm:1 S0006089 // YPL168W SGDID:S0006089, Chr XVI from 231216-232508, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017060 // cdna:Genscan chromosome:SGD1:XVI:231273:232508:1 // ensembl // 11 // --- /// GENEFINDER00000020752 // cdna:GeneFinder chromosome:SGD1:XVI:231273:232508:1 // ensembl // 11 // --- /// YPL168W // cdna:known chromosome:SGD1:XVI:231216:232508:1 gene:YPL168W // ensembl // 11 // --- --- No cerevisiae_gene -1.31469344968457 1.42496778639501 1.11135953696968 1.25174874147177 1.06740530032662 Max fold change below threshold 4 1.42496778639501 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779555_at YGR063C.S1 Protein that forms a complex with Spt5p and mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing; in addition, Spt4p is involved in kinetochore function and gene silencing 1.42481392600894 633.599670410156 797.954528808594 SPT4 6325 // establishment and/or maintenance of chromatin architecture // traceable author statement /// 6342 // chromatin silencing // inferred from mutant phenotype /// 6355 // regulation of transcription, DNA-dependent // inferred from sequence similarity /// 6355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 6368 // RNA elongation from RNA polymerase II promoter // inferred from physical interaction /// 7059 // chromosome segregation // inferred from mutant phenotype 776 // kinetochore // inferred from direct assay /// 784 // nuclear chromosome, telomeric region // inferred from direct assay /// 5634 // nucleus // inferred from physical interaction /// 8023 // transcription elongation factor complex // inferred from physical interaction 16944 // RNA polymerase II transcription elongation factor activity // inferred from mutant phenotype /// 16944 // RNA polymerase II transcription elongation factor activity // inferred from sequence similarity 749.588745117188 526.095886230469 741.103454589844 846.3203125 0.000732421991415322 0.014160200022161 0.00415039015933871 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR063C /GEN=SPT4 /DB_XREF=GI:6321501 /SEG=NC_001139:-617518,617826 /DEF=Protein that forms a complex with Spt5p and mediates both activation and inhibition of transcription elongation; Spt4p-Spt5p complex also plays a role in pre-mRNA processing /NOTE=Spt4p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 9450930]; go_component: transcription elongation factor complex [goid GO:0008023] [evidence IPI] [pmid 12242279]; go_function: Pol II transcription elongation factor activity [goid GO:0016944] [evidence IMP,ISS] [pmid 9450930]; go_process: RNA elongation from Pol II promoter [goid GO:0006368] [evidence IPI] [pmid 12242279]; go_process: chromosome segregation [goid GO:0007059] [evidence IMP] [pmid 8649393]; go_process: establishment and/or maintenance of chromatin architecture [goid GO:0006325] [evidence TAS] [pmid 8805244]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence IMP,ISS] [pmid 9450930] --- --- --- --- --- --- S0003295 // SPT4 SGDID:S0003295, Chr VII from 617828-617520, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021508 // cdna:GeneFinder chromosome:SGD1:VII:617520:617828:-1 // ensembl // 11 // --- /// YGR063C // cdna:known chromosome:SGD1:VII:617520:617828:-1 gene:YGR063C // ensembl // 11 // --- YGR064W // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene 1.24756242477361 -1.42481392600894 1.21855669230084 -1.0114495357899 1.12904618434164 Max fold change below threshold 4 1.42481392600894 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1779590_at YKR008W.S1 One of 15 subunits of the 'Remodel the Structure of Chromatin' (RSC) complex; found in close proximity to nucleosomal DNA; displaced from the surface of nucleosomal DNA after chromatin remodeling 1.42476063591565 589.310913085938 544.100524902344 RSC4 6338 // chromatin remodeling // inferred from direct assay 16586 // RSC complex // inferred from physical interaction --- 508.332885742188 582.641479492188 595.980346679688 579.8681640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR008W /GEN=RSC4 /DB_XREF=GI:6322860 /SEG=NC_001143:+451844,453721 /DEF=RSC4 is a member of RSC complex, which remodels the structure of chromatin. /NOTE=Rsc4p; go_component: nucleosome remodeling complex [goid GO:0005679] [evidence IPI] [pmid 10025404]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 10025404] --- --- --- --- --- --- S0001716 // RSC4 SGDID:S0001716, Chr XI from 451844-453721, Verified ORF // sgd // 11 // --- /// GENSCAN00000018424 // cdna:Genscan chromosome:SGD1:XI:451844:453721:1 // ensembl // 11 // --- /// GENEFINDER00000023068 // cdna:GeneFinder chromosome:SGD1:XI:451844:453721:1 // ensembl // 11 // --- /// YKR008W // cdna:known chromosome:SGD1:XI:451844:453721:1 gene:YKR008W // ensembl // 11 // --- --- No cerevisiae_gene 1.42476063591565 1.14618096887733 1.14201816744043 1.17242138644941 1.14072526158891 Max fold change below threshold 4 1.42476063591565 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775056_at YGL019W.S1 beta (38kDa) subunit of protein kinase CK2 1.42457479967093 1079.3759765625 856.399871826172 CKB1 82 // G1/S transition of mitotic cell cycle // inferred from physical interaction /// 86 // G2/M transition of mitotic cell cycle // inferred from physical interaction /// 501 // flocculation (sensu Saccharomyces) // inferred from mutant phenotype /// 6356 // regulation of transcription from RNA polymerase I promoter // inferred from direct assay /// 6359 // regulation of transcription from RNA polymerase III promoter // inferred from direct assay /// 6468 // protein amino acid phosphorylation // inferred from direct assay /// 6873 // cell ion homeostasis // inferred from mutant phenotype /// 6974 // response to DNA damage stimulus // inferred from direct assay /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction 5956 // protein kinase CK2 complex // inferred from direct assay 8605 // protein kinase CK2 regulator activity // inferred from physical interaction /// 8605 // protein kinase CK2 regulator activity // inferred from mutant phenotype 846.743713378906 952.502197265625 1206.24975585938 866.056030273438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL019W /GEN=CKB1 /DB_XREF=GI:6321419 /SEG=NC_001139:+458159,458995 /DEF=beta (38kDa) subunit of protein kinase CK2 /NOTE=Ckb1p; go_component: protein kinase CK2 complex [goid GO:0005956] [evidence IDA] [pmid 9427841]; go_function: protein kinase CK2 activity [goid GO:0004682] [evidence IDA] [pmid 9427841]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IPI] [pmid 9427841]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence IPI] [pmid 9427841]; go_process: cell ion homeostasis [goid GO:0006873] [evidence IMP] [pmid 9427841]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IPI] [pmid 9427841]; go_process: flocculation (sensu Saccharomyces) [goid GO:0000501] [evidence IMP] [pmid 9427841]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 9427841]; go_process: regulation of transcription from Pol I promoter [goid GO:0006356] [evidence IDA] [pmid 11551505]; go_process: regulation of transcription from Pol III promoter [goid GO:0006359] [evidence IDA] [pmid 11551505]; go_process: response to DNA damage stimulus [goid GO:0006974] [evidence IDA] [pmid 11551505] --- --- --- --- --- --- S0002987 // CKB1 SGDID:S0002987, Chr VII from 458161-458997, Verified ORF // sgd // 11 // --- /// GENSCAN00000019326 // cdna:Genscan chromosome:SGD1:VII:458161:458997:1 // ensembl // 11 // --- /// GENEFINDER00000021432 // cdna:GeneFinder chromosome:SGD1:VII:458161:458997:1 // ensembl // 11 // --- /// YGL019W // cdna:known chromosome:SGD1:VII:458161:458997:1 gene:YGL019W // ensembl // 11 // --- --- No cerevisiae_gene -1.04691945434808 1.12490022921421 1.2191125397164 1.42457479967093 1.02280774759752 Max fold change below threshold 4 1.42457479967093 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771708_at YDR081C.S1 Transcription factor required for the synthesis of the glycolytic enzyme pyruvate decarboxylase, required for high level expression of both the THI and the PDC genes 1.42455400549853 373.569702148438 592.800567626953 PDC2 6366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 9228 // thiamin biosynthesis // traceable author statement /// 19655 // ethanol fermentation // inferred from mutant phenotype 5634 // nucleus // inferred from curator 30528 // transcription regulator activity // inferred from mutant phenotype 514.363464355469 361.06982421875 386.069580078125 671.237670898438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR081C /GEN=PDC2 /DB_XREF=GI:6320286 /SEG=NC_001136:-607299,610076 /DEF=Regulates transcription of PDC1 and PDC5, which encode pyruvate decarboxylase /NOTE=Pdc2p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 8264540]; go_function: transcription regulator activity [goid GO:0030528] [evidence IMP] [pmid 8264540]; go_process: ethanol fermentation [goid GO:0019655] [evidence IMP] [pmid 8264540]; go_process: thiamin biosynthesis [goid GO:0009228] [evidence TAS] [pmid 9655908]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IMP] [pmid 8264540] --- --- --- --- scop // a.3.1.Two-domain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; Two-domain cytochrome c // 3.29999995231628 /// scop // a.4.1.Centromere-binding // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding // 0.0970000028610229 --- S0002488 // PDC2 SGDID:S0002488, Chr IV from 610077-607300, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023451 // cdna:GeneFinder chromosome:SGD1:IV:607300:609684:-1 // ensembl // 11 // --- /// GENSCAN00000025156 // cdna:Genscan chromosome:SGD1:IV:607300:608313:-1 // ensembl // 11 // --- /// YDR081C // cdna:known chromosome:SGD1:IV:607300:610077:-1 gene:YDR081C // ensembl // 11 // --- --- No cerevisiae_gene -1.34290272631851 -1.42455400549853 -1.06175413111273 -1.33230767430934 1.30498707123287 Max fold change below threshold 4 1.42455400549853 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776614_at YAL040C.S1 G1 cyclin involved in cell cycle progression; activates Cdc28p kinase to promote the G1 to S phase transition; plays a role in regulating transcription of the other G1 cyclins, CLN1 and CLN2; regulated by phosphorylation and proteolysis 1.42414671473434 1627.54016113281 1388.00323486328 CLN3 79 // regulation of cyclin dependent protein kinase activity // traceable author statement /// 82 // G1/S transition of mitotic cell cycle // traceable author statement /// 7033 // vacuole organization and biogenesis // inferred from mutant phenotype /// 42145 // homotypic vacuole fusion, non-autophagic // inferred from direct assay /// 42145 // homotypic vacuole fusion, non-autophagic // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5634 // nucleus // inferred from mutant phenotype 16538 // cyclin-dependent protein kinase regulator activity // traceable author statement 1359.64184570313 1726.06079101563 1529.01953125 1416.36462402344 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL040C /GEN=CLN3 /DB_XREF=GI:6319277 /SEG=NC_001133:-65781,67523 /DEF=role in cell cycle START; involved in G(sub)1 size control /NOTE=Cln3p; go_component: nucleus [goid GO:0005634] [evidence IDA,IMP] [pmid 11509671]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence TAS] [pmid 12024050]; go_process: homotypic vacuole fusion, non-autophagic [goid GO:0042145] [evidence IDA,IMP] [pmid 14573462]; go_process: regulation of cyclin dependent protein kinase activity [goid GO:0000079] [evidence TAS]; go_process: vacuole organization and biogenesis [goid GO:0007033] [evidence IMP] [pmid 14573462] --- --- --- --- --- --- S0000038 // CLN3 SGDID:S0000038, Chr I from 67521-65779, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018188 // cdna:GeneFinder chromosome:SGD1:I:65779:67521:-1 // ensembl // 11 // --- /// GENSCAN00000020342 // cdna:Genscan chromosome:SGD1:I:65779:67521:-1 // ensembl // 11 // --- /// YAL040C // cdna:known chromosome:SGD1:I:65779:67521:-1 gene:YAL040C // ensembl // 11 // --- --- No cerevisiae_gene 1.42414671473434 1.2694966666924 -1.05265791211653 1.12457522257215 1.04171891185872 Max fold change below threshold 4 1.42414671473434 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769967_at YCR036W.S1 Putative ribokinase 1.42381764059684 1728.16632080078 1696.73114013672 RBK1 6014 // D-ribose metabolism // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4747 // ribokinase activity // inferred from sequence similarity /// 5524 // ATP binding // inferred from sequence similarity 1639.43041992188 1636.18273925781 1820.14990234375 1754.03186035156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR036W /GEN=RBK1 /DB_XREF=GI:10383797 /SEG=NC_001135:+193292,194293 /DEF=ribokinase /NOTE=Rbk1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: ATP binding [goid GO:0005524] [evidence ISS] [pmid 1964349]; go_function: ribokinase activity [goid GO:0004747] [evidence ISS] [pmid 1964349]; go_process: D-ribose metabolism [goid GO:0006014] [evidence ISS] [pmid 1964349] --- --- --- --- --- --- S0000632 // RBK1 SGDID:S0000632, Chr III from 193292-194293, Verified ORF // sgd // 11 // --- /// GENSCAN00000022485 // cdna:Genscan chromosome:SGD1:III:193292:194293:1 // ensembl // 11 // --- /// GENEFINDER00000023338 // cdna:GeneFinder chromosome:SGD1:III:193292:194293:1 // ensembl // 11 // --- /// YCR036W // cdna:known chromosome:SGD1:III:193292:194293:1 gene:YCR036W // ensembl // 11 // --- --- No cerevisiae_gene -1.42381764059684 -1.00198491316779 1.25226761092563 1.11023309085023 1.06990320481863 Max fold change below threshold 4 1.42381764059684 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769534_at YMR212C.S1 Non-essential protein of unknown function; exhibits synthetic lethal genetic interactions with PHO85; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery 1.42376505741427 247.71809387207 375.660781860352 EFR3 902 // cellular morphogenesis // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay --- 346.316772460938 243.893402099609 251.542785644531 405.004791259766 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR212C /GEN=EFR3 /DB_XREF=GI:6323868 /SEG=NC_001145:-690694,693042 /DEF=Non-essential protein of unknown function; exhibits synthetic lethal genetic interactions with PHO85; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery /NOTE=Efr3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cellular morphogenesis [goid GO:0000902] [evidence IGI] [pmid 11139490] --- --- --- --- --- --- S0004825 // EFR3 SGDID:S0004825, Chr XIII from 693042-690694, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018893 // cdna:Genscan chromosome:SGD1:XIII:690694:693042:-1 // ensembl // 11 // --- /// GENEFINDER00000021994 // cdna:GeneFinder chromosome:SGD1:XIII:690694:691950:-1 // ensembl // 11 // --- /// YMR212C // cdna:known chromosome:SGD1:XIII:690694:693042:-1 gene:YMR212C // ensembl // 11 // --- --- No cerevisiae_gene -1.42376505741427 -1.41995137826442 1.13825582202778 -1.37677084068846 1.16946340306243 Max fold change below threshold 4 1.42376505741427 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771470_at YMR010W.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.4235541079352 601.340362548828 880.030181884766 --- 8152 // metabolism // traceable author statement 5737 // cytoplasm // inferred from direct assay --- 849.756408691406 596.925964355469 605.754760742188 910.303955078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR010W /GEN=PLB1 /DB_XREF=GI:6323652 /SEG=NC_001145:+285099,286316 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ymr010wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: metabolism [goid GO:0008152] [evidence TAS] [pmid 14656964] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 2.29999995231628 S0004612 // span:48-70,77-99,109-128,174-196,221-243,252-274,284-306,313-335 // numtm:8 S0004612 // YMR010W SGDID:S0004612, Chr XIII from 285099-286316, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022089 // cdna:GeneFinder chromosome:SGD1:XIII:285363:286316:1 // ensembl // 11 // --- /// YMR010W // cdna:known chromosome:SGD1:XIII:285099:286316:1 gene:YMR010W // ensembl // 11 // --- GENSCAN00000018725 // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene 1.19966422477604 -1.4235541079352 -1.14416188864497 -1.4028059930561 1.07125282700717 Max fold change below threshold 4 1.4235541079352 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777713_at SPBC216.05.S1 --- 1.42354972932836 --- --- --- --- 7.58947896957397 7.47035360336304 8.56633758544922 6.78124952316284 0.111571997404099 0.0805663987994194 0.129638999700546 0.014160200022161 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC216.05 /GEN=rad3 /DEF=ATR (ATM) checkpoint kinase --- --- --- --- --- --- SPBC216.05 // |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.42354972932836 -1.01594641599794 1.02098554242317 1.12871221065259 -1.11918591752898 Max fold change below threshold 4 1.42354972932836 Max fold change below threshold AAAAAP No 4 0 AAAP 3 1 0 No No x = 1
1778249_at YDR492W.S1 Membrane protein involved in zinc metabolism, member of the four-protein IZH family; transcription is regulated directly by Zap1p, expression induced by zinc deficiency and fatty acids; deletion increases sensitivity to elevated zinc 1.42287526994356 4223.3046875 4118.95178222656 IZH1 6629 // lipid metabolism // traceable author statement /// 6882 // zinc ion homeostasis // inferred from mutant phenotype /// 6882 // zinc ion homeostasis // inferred from sequence similarity /// 10043 // response to zinc ion // inferred from sequence similarity 5783 // endoplasmic reticulum // inferred from direct assay /// 16020 // membrane // traceable author statement /// 16020 // membrane // inferred from sequence similarity 46872 // metal ion binding // inferred from sequence similarity 4549.23828125 5056.751953125 3389.857421875 3688.66528320313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR492W /GEN=IZH1 /DB_XREF=GI:6320699 /SEG=NC_001136:+1434912,1435862 /DEF=Membrane protein involved in zinc metabolism, member of the four-protein IZH family, direct target of the Zap1p transcription factor, expression induced by zinc deficiency and fatty acids, deletion increases sensitivity to elevated zinc /NOTE=Izh1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_component: membrane [goid GO:0016020] [evidence ISS,TAS] [pmid 15060275]; go_function: metal ion binding [goid GO:0046872] [evidence ISS] [pmid 15060275]; go_process: lipid metabolism [goid GO:0006629] [evidence TAS] [pmid 15060275]; go_process: response to zinc ion [goid GO:0010043] [evidence ISS] [pmid 15060275]; go_process: zinc ion homeostasis [goid GO:0006882] [evidence IMP,ISS] [pmid 15060275] --- --- --- --- --- S0002900 // span:88-110,120-142,155-177,181-203,216-235,250-267 // numtm:6 S0002900 // IZH1 SGDID:S0002900, Chr IV from 1434914-1435864, Verified ORF // sgd // 11 // --- /// YDR492W // cdna:known chromosome:SGD1:IV:1434914:1435864:1 gene:YDR492W // ensembl // 11 // --- --- No cerevisiae_gene -1.18606597425466 1.11156014270933 -1.42287526994356 -1.34201463810644 -1.23330200275032 Max fold change below threshold 4 1.42287526994356 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772258_at YMR244C-A.S1 Hypothetical protein 1.42285440264368 551.101898193359 484.226211547852 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 454.577850341797 498.774658203125 603.429138183594 513.874572753906 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR244C-A /GEN=ZRC1 /DB_XREF=GI:6323902 /SEG=NC_001145:-758516,758830 /DEF=Hypothetical ORF /NOTE=Ymr244c-ap; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004857 // YMR244C-A SGDID:S0004857, Chr XIII from 758830-758516, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018922 // cdna:Genscan chromosome:SGD1:XIII:758516:758830:-1 // ensembl // 11 // --- /// YMR244C-A // cdna:known chromosome:SGD1:XIII:758516:758830:-1 gene:YMR244C-A // ensembl // 11 // --- YMR245W // ensembl // 10 // Negative Strand Matching Probes No cerevisiae_gene -1.08381479695072 1.09722604792138 1.42285440264368 1.32744949568017 1.13044349250084 Max fold change below threshold 4 1.42285440264368 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771009_at YHR113W.S1 Putative metalloprotease 1.42257514095263 2649.95971679688 2022.46472167969 --- 6508 // proteolysis and peptidolysis // inferred from sequence similarity 324 // vacuole (sensu Fungi) // inferred from sequence similarity /// 5737 // cytoplasm // inferred from direct assay 4177 // aminopeptidase activity // inferred from sequence similarity /// 4222 // metalloendopeptidase activity // inferred from sequence similarity 2008.36340332031 2442.87158203125 2857.0478515625 2036.56604003906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR113W /GEN=UBA4 /DB_XREF=GI:6321905 /SEG=NC_001140:+336339,337811 /DEF=Hypothetical ORF /NOTE=Yhr113wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence ISS] [pmid 8091229]; go_function: aminopeptidase activity [goid GO:0004177] [evidence ISS] [pmid 8091229]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 1.79999995231628 --- S0001155 // YHR113W SGDID:S0001155, Chr VIII from 336339-337811, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016650 // cdna:Genscan chromosome:SGD1:VIII:336363:337811:1 // ensembl // 11 // --- /// GENEFINDER00000020262 // cdna:GeneFinder chromosome:SGD1:VIII:336363:337811:1 // ensembl // 11 // --- /// YHR113W // cdna:known chromosome:SGD1:VIII:336339:337811:1 gene:YHR113W // ensembl // 11 // --- --- No cerevisiae_gene -1.31255643828668 1.21634938079064 1.31366509177048 1.42257514095263 1.01404259641065 Max fold change below threshold 4 1.42257514095263 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770958_at YBR273C.S1 UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p 1.42232125416551 1365 1233.94354248047 UBX7 6511 // ubiquitin-dependent protein catabolism // inferred from mutant phenotype /// 30435 // sporulation // inferred from mutant phenotype 5635 // nuclear membrane // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay --- 1208.61303710938 1162.525390625 1567.474609375 1259.27404785156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR273C /GEN=HSM3 /DB_XREF=GI:6319750 /SEG=NC_001134:-748018,749328 /DEF=Hypothetical ORF /NOTE=Ybr273cp --- --- --- --- --- --- S0000477 // UBX7 SGDID:S0000477, Chr II from 749366-748056, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021357 // cdna:Genscan chromosome:SGD1:II:748056:749366:-1 // ensembl // 11 // --- /// GENEFINDER00000022317 // cdna:GeneFinder chromosome:SGD1:II:748056:749366:-1 // ensembl // 11 // --- /// YBR273C // cdna:known chromosome:SGD1:II:748056:749366:-1 gene:YBR273C // ensembl // 11 // --- --- No cerevisiae_gene -1.37256873495302 -1.03964442140881 1.42232125416551 1.29692015661515 1.04191665089378 Max fold change below threshold 4 1.42232125416551 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773430_at YDR376W.S1 Oxidoreductase of the mitochondrial inner membrane, involved in cytoplasmic and mitochondrial iron homeostasis and required for activity of Fe-S cluster-containing enzymes; one of the few mitochondrial proteins essential for viability 1.42223358315323 318.736068725586 357.732650756836 ARH1 6784 // heme a biosynthesis // inferred from genetic interaction /// 6784 // heme a biosynthesis // inferred from mutant phenotype /// 6879 // iron ion homeostasis // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay 15039 // NADPH-adrenodoxin reductase activity // inferred from direct assay 339.929321289063 295.398468017578 342.073669433594 375.535980224609 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR376W /GEN=ARH1 /DB_XREF=GI:6320584 /SEG=NC_001136:+1226810,1228291 /DEF=Oxidoreductase of the mitochondrial inner membrane, involved in cytoplasmic and mitochondrial iron homeostasis and required for activity of Fe-S cluster-containing enzymes; one of the few mitochondrial proteins essential for viability /NOTE=Arh1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 9727014]; go_function: NADPH-adrenodoxin reductase activity [goid GO:0015039] [evidence IDA] [pmid 9727014]; go_process: heme a biosynthesis [goid GO:0006784] [evidence IGI,IMP] [pmid 11788607]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IMP] [pmid 11035018] --- --- --- --- --- --- S0002784 // ARH1 SGDID:S0002784, Chr IV from 1226812-1228293, Verified ORF // sgd // 11 // --- /// GENSCAN00000025398 // cdna:Genscan chromosome:SGD1:IV:1226812:1228293:1 // ensembl // 11 // --- /// GENEFINDER00000023454 // cdna:GeneFinder chromosome:SGD1:IV:1227589:1228293:1 // ensembl // 11 // --- /// YDR376W // cdna:known chromosome:SGD1:IV:1226812:1228293:1 gene:YDR376W // ensembl // 11 // --- --- No cerevisiae_gene -1.42223358315323 -1.15074842320724 1.2802167988592 1.00630821765066 1.10474724216352 Max fold change below threshold 4 1.42223358315323 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778756_at YLR045C.S1 Microtubule-associated protein (MAP) of the XMAP215/Dis1 family; regulates microtubule dynamics during spindle orientation and metaphase chromosome alignment; interacts with spindle pole body component Spc72p 1.42213988679814 272.502227783203 362.347579956055 STU2 7020 // microtubule nucleation // inferred from physical interaction /// 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from genetic interaction 776 // kinetochore // inferred from direct assay /// 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 5816 // spindle pole body // inferred from direct assay /// 5876 // spindle microtubule // inferred from direct assay /// 5938 // cell cortex // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from physical interaction /// 8017 // microtubule binding // inferred from mutant phenotype 340.586791992188 247.375518798828 297.628936767578 384.108367919922 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR045C /GEN=STU2 /DB_XREF=GI:6323074 /SEG=NC_001144:-235038,237704 /DEF=Control of microtubule dynamics by Stu2p is essential for spindle orientation and metaphase chromosome alignment. /NOTE=Stu2p; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 9606209]; go_function: microtubule binding [goid GO:0008017] [evidence IMP] [pmid 11553724]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9606209]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752]; go_process: mitotic spindle assembly (sensu Fungi) [goid GO:0030472] [evidence IGI] [pmid 11756468] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 0.0329999998211861 --- S0004035 // STU2 SGDID:S0004035, Chr XII from 237704-235038, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017856 // cdna:Genscan chromosome:SGD1:XII:235038:236819:-1 // ensembl // 11 // --- /// GENEFINDER00000024574 // cdna:GeneFinder chromosome:SGD1:XII:235038:237704:-1 // ensembl // 11 // --- /// YLR045C // cdna:known chromosome:SGD1:XII:235038:237704:-1 gene:YLR045C // ensembl // 11 // --- --- No cerevisiae_gene -1.35326466739768 -1.37680071838136 -1.42213988679814 -1.14433359770443 1.12778409777186 Max fold change below threshold 4 1.42213988679814 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770062_at YGR178C.S1 Protein interacting with poly(A)-binding protein Pab1p; likely involved in control of the extent of mRNA polyadenylation 1.42213865409752 1864.88122558594 2211.11413574219 PBP1 6378 // mRNA polyadenylylation // inferred from genetic interaction /// 6378 // mRNA polyadenylylation // inferred from mutant phenotype /// 6378 // mRNA polyadenylylation // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5844 // polysome // inferred from direct assay --- 2203.75366210938 1612.39819335938 2117.3642578125 2218.474609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR178C /GEN=PBP1 /DB_XREF=GI:6321617 /SEG=NC_001139:-851050,853218 /DEF=Poly(A)-binding protein binding protein /NOTE=Pbp1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IGI,IMP,IPI] [pmid 9819425] --- --- --- --- --- --- S0003410 // PBP1 SGDID:S0003410, Chr VII from 853220-851052, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019480 // cdna:Genscan chromosome:SGD1:VII:851052:853220:-1 // ensembl // 11 // --- /// GENEFINDER00000021721 // cdna:GeneFinder chromosome:SGD1:VII:851052:853220:-1 // ensembl // 11 // --- /// YGR178C // cdna:known chromosome:SGD1:VII:851052:853220:-1 gene:YGR178C // ensembl // 11 // --- --- No cerevisiae_gene -1.42213865409752 -1.3667552290653 -1.16393411232177 -1.04080044516579 1.00667994228154 Max fold change below threshold 4 1.42213865409752 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772579_at YHR121W.S1 Protein containing an Lsm domain and an AD domain; may bind RNA and have a role in RNA processing 1.42121387624828 425.263916015625 616.097564697266 LSM12 16070 // RNA metabolism // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3723 // RNA binding // inferred from sequence similarity 592.285461425781 417.2666015625 433.26123046875 639.90966796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR121W /GEN=MSH1 /DB_XREF=GI:6321913 /SEG=NC_001140:+352758,353321 /DEF=Sm-like protein /NOTE=Yhr121wp --- --- --- --- --- --- S0001163 // LSM12 SGDID:S0001163, Chr VIII from 352758-353321, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000016658 // cdna:Genscan chromosome:SGD1:VIII:352758:353321:1 // ensembl // 10 // --- /// GENEFINDER00000020106 // cdna:GeneFinder chromosome:SGD1:VIII:352758:353321:1 // ensembl // 10 // --- /// YHR121W // cdna:known chromosome:SGD1:VIII:352758:353321:1 gene:YHR121W // ensembl // 10 // --- --- No cerevisiae_gene -1.42121387624828 -1.41944133368907 1.0988518658018 -1.36704006676291 1.08040752246109 Max fold change below threshold 4 1.42121387624828 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773865_at YLR141W.S1 Transcription factor, member of UAF (upstream activation factor) family along with Rrn9p and Rrn10p, involved in transcription of rDNA by RNA polymerase I 1.42117163973967 70.3251914978027 107.632434844971 RRN5 6360 // transcription from RNA polymerase I promoter // traceable author statement 500 // RNA polymerase I upstream activating factor complex // traceable author statement 182 // ribosomal DNA (rDNA) binding // traceable author statement /// 3701 // RNA polymerase I transcription factor activity // traceable author statement 97.9802169799805 68.9432678222656 71.7071151733398 117.284652709961 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR141W /GEN=RRN5 /DB_XREF=GI:6323170 /SEG=NC_001144:+423684,424775 /DEF=involved in transcription of rDNA by RNA polymerase I. UAF interacts directly with an upstream element of the promoter and mediates its stimulatory function. /NOTE=Rrn5p; go_component: RNA polymerase I upstream activating factor complex [goid GO:0000500] [evidence TAS] [pmid 11500378]; go_function: RNA polymerase I transcription factor activity [goid GO:0003701] [evidence TAS] [pmid 9932458]; go_function: ribosomal DNA (rDNA) binding [goid GO:0000182] [evidence TAS] [pmid 11500378]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS] [pmid 9932458] --- --- --- --- --- --- S0004131 // RRN5 SGDID:S0004131, Chr XII from 423684-424775, Verified ORF // sgd // 11 // --- /// GENSCAN00000017929 // cdna:Genscan chromosome:SGD1:XII:423684:424775:1 // ensembl // 11 // --- /// GENEFINDER00000024745 // cdna:GeneFinder chromosome:SGD1:XII:423684:424775:1 // ensembl // 11 // --- /// YLR141W // cdna:known chromosome:SGD1:XII:423684:424775:1 gene:YLR141W // ensembl // 11 // --- --- No cerevisiae_gene 1.28810594976992 -1.42117163973967 -1.31763139005613 -1.36639462824756 1.19702381077524 Max fold change below threshold 4 1.42117163973967 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777514_at YDR084C.S1 Integral membrane protein localized to vesicles along with the v-SNARE Tlg2p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.42101033023927 1152.19158935547 1635.19976806641 --- --- 5737 // cytoplasm // inferred from direct assay --- 1549.83154296875 1213.728515625 1090.65466308594 1720.56799316406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR084C /GEN=RRP8 /DB_XREF=GI:6320289 /SEG=NC_001136:-613399,613998 /DEF=Integral membrane protein localized to vesicles along with the v-SNARE Tlg2p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ydr084cp --- --- --- --- --- S0002491 // span:31-53,109-131,133-152 // numtm:3 S0002491 // TVP23 SGDID:S0002491, Chr IV from 613999-613400, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDR084C // cdna:known chromosome:SGD1:IV:613400:613999:-1 gene:YDR084C // ensembl // 11 // --- --- No cerevisiae_gene -1.28423154649609 -1.27691779752796 1.17948428744934 -1.42101033023927 1.11016452140873 Max fold change below threshold 4 1.42101033023927 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773173_at YFR051C.S1 Delta subunit of the coatomer complex (COPI), which coats Golgi-derived transport vesicles; involved in retrograde transport between Golgi and ER 1.42080527712493 1591.79321289063 2093.62274169922 RET2 6888 // ER to Golgi transport // inferred from mutant phenotype /// 6890 // retrograde transport, Golgi to ER // inferred from mutant phenotype 30126 // COPI vesicle coat // inferred from sequence similarity /// 30126 // COPI vesicle coat // inferred from mutant phenotype 5515 // protein binding // inferred from mutant phenotype 2011.66394042969 1415.86181640625 1767.724609375 2175.58154296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR051C /GEN=RET2 /DB_XREF=GI:14318576 /SEG=NC_001138:-250150,251790 /DEF=coatomer (COPI) complex delta subunit /NOTE=Ret2p; go_component: COPI vesicle coat [goid GO:0030126] [evidence IMP,ISS] [pmid 8617224]; go_function: protein binding [goid GO:0005515] [evidence IMP] [pmid 9811561]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 8617224]; go_process: retrograde transport, Golgi to ER [goid GO:0006890] [evidence IMP] [pmid 8617224] --- --- --- --- scop // a.4.5.LysR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; LysR-like transcriptional regulators // 2.70000004768372 --- S0001947 // RET2 SGDID:S0001947, Chr VI from 251790-250150, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018569 // cdna:GeneFinder chromosome:SGD1:VI:250150:251790:-1 // ensembl // 11 // --- /// GENSCAN00000023287 // cdna:Genscan chromosome:SGD1:VI:250150:251790:-1 // ensembl // 11 // --- /// YFR051C // cdna:known chromosome:SGD1:VI:250150:251790:-1 gene:YFR051C // ensembl // 11 // --- --- No cerevisiae_gene -1.04662883923349 -1.42080527712493 -1.41175990347 -1.13799622959423 1.08148359139154 Max fold change below threshold 4 1.42080527712493 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778577_at YNL070W.S1 Involved in mitochondrial protein import; translocase of the outer mito. membrane 1.42062727573527 1797.13568115234 1357.23388671875 TOM7 30150 // mitochondrial matrix protein import // inferred from mutant phenotype /// 30150 // mitochondrial matrix protein import // inferred from physical interaction /// 45040 // mitochondrial outer membrane protein import // inferred from mutant phenotype 5742 // mitochondrial outer membrane translocase complex // inferred from physical interaction /// 5742 // mitochondrial outer membrane translocase complex // inferred from mutant phenotype 8565 // protein transporter activity // inferred from mutant phenotype 1304.5234375 1853.24157714844 1741.02978515625 1409.9443359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL070W /GEN=TOM7 /DB_XREF=GI:6324259 /SEG=NC_001146:+493365,493547 /DEF=Involved in mitochondrial protein import /NOTE=Tom7p; go_component: mitochondrial outer membrane translocase complex [goid GO:0005742] [evidence IMP] [pmid 8641278]; go_component: mitochondrial outer membrane translocase complex [goid GO:0005742] [evidence IPI] [pmid 9774667]; go_function: protein transporter activity [goid GO:0008565] [evidence IMP] [pmid 8641278]; go_process: mitochondrial matrix protein import [goid GO:0030150] [evidence IMP,IPI] [pmid 8641278]; go_process: mitochondrial outer membrane protein import [goid GO:0045040] [evidence IMP] [pmid 8641278] --- --- --- --- --- --- S0005014 // TOM7 SGDID:S0005014, Chr XIV from 493365-493547, Verified ORF // sgd // 11 // --- /// YNL070W // cdna:known chromosome:SGD1:XIV:493365:493547:1 gene:YNL070W // ensembl // 11 // --- --- No cerevisiae_gene 1.01003372804365 1.42062727573527 1.12286369094317 1.33460981620443 1.08081180867055 Max fold change below threshold 4 1.42062727573527 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771458_at YGR208W.S1 Phosphoserine phosphatase of the phosphoglycerate pathway, involved in serine and glycine biosynthesis, expression is regulated by the available nitrogen source 1.42060663980438 265.27857208252 334.217514038086 SER2 9070 // serine family amino acid biosynthesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4647 // phosphoserine phosphatase activity // inferred from mutant phenotype 310.199981689453 218.357406616211 312.199737548828 358.235046386719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR208W /GEN=SER2 /DB_XREF=GI:6321647 /SEG=NC_001139:+911886,912815 /DEF=phosphoserine phosphatase /NOTE=Ser2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: phosphoserine phosphatase activity [goid GO:0004647] [evidence IMP] [pmid 1326413]; go_process: serine family amino acid biosynthesis [goid GO:0009070] [evidence IMP] [pmid 1326413] --- --- --- --- --- --- S0003440 // SER2 SGDID:S0003440, Chr VII from 911888-912817, Verified ORF // sgd // 11 // --- /// GENSCAN00000019502 // cdna:Genscan chromosome:SGD1:VII:911888:912817:1 // ensembl // 11 // --- /// GENEFINDER00000021602 // cdna:GeneFinder chromosome:SGD1:VII:911888:912817:1 // ensembl // 11 // --- /// YGR208W // cdna:known chromosome:SGD1:VII:911888:912817:1 gene:YGR208W // ensembl // 11 // --- --- No cerevisiae_gene 1.19954768657166 -1.42060663980438 1.18099876306405 1.00644666659387 1.15485192628204 Max fold change below threshold 4 1.42060663980438 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774650_at YOR354C.S1 Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to mitochondria; msc6 mutants are defective in directing meiotic recombination events to homologous chromatids 1.42052826184189 1445.11767578125 1946.73669433594 MSC6 7131 // meiotic recombination // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay --- 1924.91723632813 1355.07141113281 1535.16394042969 1968.55615234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR354C /GEN=MSC6 /DB_XREF=GI:6324930 /SEG=NC_001147:-1001142,1003220 /DEF=Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to mitochondria; msc6 mutants are defective in directing meiotic recombination events to homologous chromatids /NOTE=Msc6p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: meiotic recombination [goid GO:0007131] [evidence IMP] [pmid 10511544] --- --- --- --- --- --- S0005881 // MSC6 SGDID:S0005881, Chr XV from 1003220-1001142, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017806 // cdna:Genscan chromosome:SGD1:XV:1001142:1003220:-1 // ensembl // 11 // --- /// GENEFINDER00000022597 // cdna:GeneFinder chromosome:SGD1:XV:1001142:1002557:-1 // ensembl // 11 // --- /// YOR354C // cdna:known chromosome:SGD1:XV:1001142:1003220:-1 gene:YOR354C // ensembl // 11 // --- --- No cerevisiae_gene 1.27802445848867 -1.42052826184189 1.04172206571889 -1.25388382675882 1.02267054146124 Max fold change below threshold 4 1.42052826184189 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772223_at YDL066W.S1 Mitochondrial NADP-specific isocitrate dehydrogenase, catalyzes the oxidation of isocitrate to alpha-ketoglutarate; not required for mitochondrial respiration and may function to divert alpha-ketoglutarate to biosynthetic processes 1.42035006003156 4027.65600585938 3049.197265625 IDP1 6102 // isocitrate metabolism // traceable author statement /// 6537 // glutamate biosynthesis // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 42645 // mitochondrial nucleoid // inferred from direct assay 4450 // isocitrate dehydrogenase (NADP+) activity // traceable author statement 3151.62182617188 3578.90576171875 4476.40625 2946.77270507813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL066W /GEN=IDP1 /DB_XREF=GI:6320137 /SEG=NC_001136:+334835,336121 /DEF=Mitochondrial NADP-specific isocitrate dehydrogenase, catalyzes the oxidation of isocitrate to alpha-ketoglutarate; not required for mitochondrial respiration and may function to divert alpha-ketoglutarate to biosynthetic processes /NOTE=Idp1p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 9175438]; go_function: isocitrate dehydrogenase (NADP+) activity [goid GO:0004450] [evidence TAS] [pmid 9175438]; go_process: glutamate biosynthesis [goid GO:0006537] [evidence TAS] [pmid 9175438]; go_process: isocitrate metabolism [goid GO:0006102] [evidence TAS] [pmid 9175438] --- --- --- --- --- --- S0002224 // IDP1 SGDID:S0002224, Chr IV from 334835-336121, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023961 // cdna:GeneFinder chromosome:SGD1:IV:334835:336121:1 // ensembl // 11 // --- /// GENSCAN00000025051 // cdna:Genscan chromosome:SGD1:IV:334835:336121:1 // ensembl // 11 // --- /// YDL066W // cdna:known chromosome:SGD1:IV:334835:336121:1 gene:YDL066W // ensembl // 11 // --- --- No cerevisiae_gene 1.05128877485341 1.13557589048235 -1.27785193696031 1.42035006003156 -1.06951643088751 Max fold change below threshold 4 1.42035006003156 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776624_at YOR374W.S1 Mitochondrial aldehyde dehydrogenase, required for growth on ethanol and conversion of acetaldehyde to acetate; activity is K+ dependent; utilizes NADP+ or NAD+ equally as coenzymes; expression is glucose repressed 1.42032587471521 8068.65600585938 6260.44360351563 ALD4 6067 // ethanol metabolism // inferred from mutant phenotype 5739 // mitochondrion // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from direct assay /// 5739 // mitochondrion // inferred from sequence similarity /// 42645 // mitochondrial nucleoid // inferred from direct assay 4029 // aldehyde dehydrogenase (NAD) activity // inferred from mutant phenotype /// 4029 // aldehyde dehydrogenase (NAD) activity // inferred from sequence similarity 7015.3134765625 9964.03125 6173.28076171875 5505.57373046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR374W /GEN=ALD4 /DB_XREF=GI:6324950 /SEG=NC_001147:+1039836,1041395 /DEF=Glucose repressed. Utilizes NADP+ or NAD+ as a coenzyme equally well. (sold by SIGMA under the catalogue number A5550, according to A. Blomberg). /NOTE=Ald4p; go_component: mitochondrion [goid GO:0005739] [evidence IMP,ISS] [pmid 9675847]; go_function: aldehyde dehydrogenase (NAD) activity [goid GO:0004029] [evidence IMP,ISS] [pmid 9675847]; go_process: ethanol metabolism [goid GO:0006067] [evidence IMP] [pmid 9675847] --- --- --- --- --- --- S0005901 // ALD4 SGDID:S0005901, Chr XV from 1039836-1041395, Verified ORF // sgd // 11 // --- /// GENSCAN00000017821 // cdna:Genscan chromosome:SGD1:XV:1039920:1041395:1 // ensembl // 11 // --- /// GENEFINDER00000022712 // cdna:GeneFinder chromosome:SGD1:XV:1039920:1041395:1 // ensembl // 11 // --- /// YOR374W // cdna:known chromosome:SGD1:XV:1039836:1041395:1 gene:YOR374W // ensembl // 11 // --- --- No cerevisiae_gene -1.13917385137387 1.42032587471521 -1.09858452323268 -1.13639954950134 -1.27422023934374 Max fold change below threshold 4 1.42032587471521 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772693_at YPL016W.S1 One of 11 subunits of the SWI/SNF chromatin remodeling complex that regulates transcription by remodeling chromosomes; required for transcription of many genes, including ADH1, ADH2, GAL1, HO, INO1 and SUC2 1.42023097539356 618.587341308594 810.763153076172 SWI1 6338 // chromatin remodeling // traceable author statement 16514 // SWI/SNF complex // traceable author statement /// 16585 // chromatin remodeling complex // traceable author statement 16251 // general RNA polymerase II transcription factor activity // traceable author statement 793.997619628906 678.112365722656 559.062316894531 827.528686523438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL016W /GEN=SWI1 /DB_XREF=GI:6325241 /SEG=NC_001148:+521009,524953 /DEF=Global transcription activator that acts in complex with Snf2p, Snf5p, Snf6p, and Swi3p to assist gene-specific activators; involved in the regulation of expression of many genes, including ADH1, ADH2, GAL1, HO, INO1 and SUC2 /NOTE=Swi1p; go_component: SWI/SNF complex [goid GO:0016514] [evidence TAS] [pmid 9726966]; go_component: nucleosome remodeling complex [goid GO:0005679] [evidence TAS] [pmid 9048886]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9048886]; go_process: chromatin remodeling [goid GO:0006338] [evidence TAS] [pmid 9048886] --- --- --- --- scop // a.4.3.ARID domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; ARID-like; ARID domain // 0.0 --- S0005937 // SWI1 SGDID:S0005937, Chr XVI from 521011-524955, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020777 // cdna:GeneFinder chromosome:SGD1:XVI:522004:524955:1 // ensembl // 11 // --- /// GENSCAN00000017172 // cdna:Genscan chromosome:SGD1:XVI:522484:524955:1 // ensembl // 11 // --- /// YPL016W // cdna:known chromosome:SGD1:XVI:521011:524955:1 gene:YPL016W // ensembl // 11 // --- --- No cerevisiae_gene 1.15948726317769 -1.17089388096138 -1.15990866142715 -1.42023097539356 1.04223068944489 Max fold change below threshold 4 1.42023097539356 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769587_at YMR220W.S1 Phosphomevalonate kinase, an essential cytosolic enzyme that acts in the biosynthesis of isoprenoids and sterols, including ergosterol, from mevalonate 1.41989001506463 1022.74786376953 1331.70288085938 ERG8 6696 // ergosterol biosynthesis // traceable author statement /// 8299 // isoprenoid biosynthesis // traceable author statement 5829 // cytosol // traceable author statement 4631 // phosphomevalonate kinase activity // traceable author statement 1252.37609863281 882.023315429688 1163.47241210938 1411.02966308594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR220W /GEN=ERG8 /DB_XREF=GI:6323876 /SEG=NC_001145:+712315,713670 /DEF=Phosphomevalonate kinase, an essential cytosolic enzyme that acts in the biosynthesis of isoprenoids and sterols, including ergosterol, from mevalonate /NOTE=Erg8p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: phosphomevalonate kinase activity [goid GO:0004631] [evidence TAS]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence TAS]; go_process: isoprenoid biosynthesis [goid GO:0008299] [evidence TAS] [pmid 1846667] --- --- --- --- --- --- S0004833 // ERG8 SGDID:S0004833, Chr XIII from 712315-713670, Verified ORF // sgd // 11 // --- /// GENSCAN00000018901 // cdna:Genscan chromosome:SGD1:XIII:712315:713670:1 // ensembl // 11 // --- /// GENEFINDER00000022001 // cdna:GeneFinder chromosome:SGD1:XIII:712423:713670:1 // ensembl // 11 // --- /// YMR220W // cdna:known chromosome:SGD1:XIII:712315:713670:1 gene:YMR220W // ensembl // 11 // --- --- No cerevisiae_gene -1.01320324020727 -1.41989001506463 1.32479773555444 -1.07641237179166 1.12668204433662 Max fold change below threshold 4 1.41989001506463 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771722_at YDL230W.S1 Phosphotyrosine-specific protein phosphatase that dephosphorylates a broad range of substrates in vivo, including Fpr3p; localized to the cytoplasm and the mitochondria 1.41945744244691 1490.32318115234 1756.46771240234 PTP1 6470 // protein amino acid dephosphorylation // inferred from direct assay /// 6470 // protein amino acid dephosphorylation // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4725 // protein tyrosine phosphatase activity // inferred from direct assay /// 4725 // protein tyrosine phosphatase activity // inferred from sequence similarity 1646.98181152344 1511.99035644531 1468.65600585938 1865.95361328125 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL230W /GEN=PTP1 /DB_XREF=GI:6319971 /SEG=NC_001136:+42701,43708 /DEF=phosphotyrosine-specific protein phosphatase /NOTE=Ptp1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein tyrosine phosphatase activity [goid GO:0004725] [evidence IDA,ISS] [pmid 1649172]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence IDA,IMP] [pmid 7559654] --- --- --- --- --- --- S0002389 // PTP1 SGDID:S0002389, Chr IV from 42701-43708, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023897 // cdna:GeneFinder chromosome:SGD1:IV:42701:43708:1 // ensembl // 10 // --- /// GENSCAN00000024930 // cdna:Genscan chromosome:SGD1:IV:42701:43708:1 // ensembl // 10 // --- /// YDL230W // cdna:known chromosome:SGD1:IV:42701:43708:1 gene:YDL230W // ensembl // 10 // --- --- No cerevisiae_gene 1.274377588325 -1.08928063231533 -1.41945744244691 -1.12142108495973 1.1329533818927 Max fold change below threshold 4 1.41945744244691 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773623_at YNL283C.S1 Partially redundant sensor-transducer of the stress-activated PKC1-MPK1 signaling pathway involved in maintenance of cell wall integrity and recovery from heat shock; secretory pathway Wsc2p is required for the arrest of secretion response 1.41899045781755 490.199951171875 516.850463867188 WSC2 7047 // cell wall organization and biogenesis // inferred from genetic interaction /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 7266 // Rho protein signal transduction // inferred from genetic interaction /// 7266 // Rho protein signal transduction // inferred from sequence similarity /// 9408 // response to heat // inferred from sequence similarity /// 9408 // response to heat // inferred from genetic interaction /// 30036 // actin cytoskeleton organization and biogenesis // traceable author statement 5624 // membrane fraction // inferred from sequence similarity /// 5737 // cytoplasm // inferred from direct assay /// 30427 // site of polarized growth // inferred from direct assay 4888 // transmembrane receptor activity // inferred from genetic interaction /// 4888 // transmembrane receptor activity // inferred from sequence similarity 504.883239746094 430.310852050781 550.089050292969 528.817687988281 0.000732421991415322 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL283C /GEN=WSC2 /DB_XREF=GI:6324046 /SEG=NC_001146:-105182,106693 /DEF=cell wall integrity and stress response component 2 /NOTE=Wsc2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: membrane fraction [goid GO:0005624] [evidence ISS] [pmid 10348843]; go_function: transmembrane receptor activity [goid GO:0004888] [evidence IGI,ISS] [pmid 10430578]; go_process: Rho protein signal transduction [goid GO:0007266] [evidence IGI] [pmid 10348843]; go_process: Rho protein signal transduction [goid GO:0007266] [evidence ISS] [pmid 10508863]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence TAS] [pmid 10508863]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IGI,IMP] [pmid 10348843]; go_process: response to heat [goid GO:0009408] [evidence IGI] [pmid 10348843]; go_process: response to heat [goid GO:0009408] [evidence ISS] [pmid 10508863] --- --- --- --- --- S0005227 // span:324-346 // numtm:1 S0005227 // WSC2 SGDID:S0005227, Chr XIV from 106693-105182, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020404 // cdna:GeneFinder chromosome:SGD1:XIV:105182:106693:-1 // ensembl // 11 // --- /// YNL283C // cdna:known chromosome:SGD1:XIV:105182:106693:-1 gene:YNL283C // ensembl // 11 // --- --- No cerevisiae_gene 1.41899045781755 -1.17329887763675 -1.34149293993719 1.08953715827368 1.04740590765941 Max fold change below threshold 4 1.41899045781755 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775954_at SPBC365.03c.S1 --- 1.41873245816938 --- --- --- --- 6.04937601089478 7.39413166046143 8.58244609832764 6.4498348236084 0.171387001872063 0.111571997404099 0.00292969006113708 0.018554700538516 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC365.03c /GEN=rpl2101 /DEF=60S ribosomal protein L21 --- --- --- --- --- --- SPBC365.03c // |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.02772721193313 1.22229658846545 1.31534215885738 1.41873245816938 1.06619836690469 Max fold change below threshold 4 1.41873245816938 Max fold change below threshold AMAAPP No 3 0 AAPP 2 2 0 No No 1 < x = 2
1776665_at YNL232W.S1 Subunit of the exosome, which is an essential complex present in both nucleus and cytoplasm that mediates RNA processing and degradation 1.41865541095199 733.727203369141 980.262054443359 CSL4 6365 // 35S primary transcript processing // traceable author statement /// 6402 // mRNA catabolism // inferred from physical interaction /// 43330 // response to exogenous dsRNA // inferred from mutant phenotype 176 // nuclear exosome (RNase complex) // inferred from direct assay /// 177 // cytoplasmic exosome (RNase complex) // inferred from direct assay 175 // 3'-5'-exoribonuclease activity // traceable author statement 945.310607910156 666.342651367188 801.111755371094 1015.21350097656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL232W /GEN=CSL4 /DB_XREF=GI:6324097 /SEG=NC_001146:+214922,215800 /DEF=Subunit of the exosome, which is an essential complex present in both nucleus and cytoplasm that mediates RNA processing and degradation /NOTE=Csl4p; go_component: cytoplasmic exosome (RNase complex) [goid GO:0000177] [evidence IDA] [pmid 10465791]; go_component: nuclear exosome (RNase complex) [goid GO:0000176] [evidence IDA] [pmid 10465791]; go_function: 3'-5'-exoribonuclease activity [goid GO:0000175] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: mRNA catabolism [goid GO:0006402] [evidence IPI] [pmid 10465791] --- --- --- --- --- --- S0005176 // CSL4 SGDID:S0005176, Chr XIV from 214922-215800, Verified ORF // sgd // 11 // --- /// GENSCAN00000019854 // cdna:Genscan chromosome:SGD1:XIV:214922:215800:1 // ensembl // 11 // --- /// GENEFINDER00000020529 // cdna:GeneFinder chromosome:SGD1:XIV:214922:215800:1 // ensembl // 11 // --- /// YNL232W // cdna:known chromosome:SGD1:XIV:214922:215800:1 gene:YNL232W // ensembl // 11 // --- --- No cerevisiae_gene 1.02776057984104 -1.41865541095199 1.00582600597922 -1.17999842290701 1.07394701009538 Max fold change below threshold 4 1.41865541095199 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772010_at YCR012W.S1 3-phosphoglycerate kinase, catalyzes transfer of high-energy phosphoryl groups from the acyl phosphate of 1,3-bisphosphoglycerate to ADP to produce ATP; key enzyme in glycolysis and gluconeogenesis 1.41858750783923 9237.134765625 7835.48779296875 PGK1 6094 // gluconeogenesis // inferred from mutant phenotype /// 6096 // glycolysis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4618 // phosphoglycerate kinase activity // inferred from direct assay 9191.583984375 11174.9677734375 7299.3017578125 6479.3916015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR012W /GEN=PGK1 /DB_XREF=GI:10383781 /SEG=NC_001135:+137743,138993 /DEF=3-phosphoglycerate kinase /NOTE=Pgk1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: phosphoglycerate kinase activity [goid GO:0004618] [evidence IDA] [pmid 6254992]; go_process: gluconeogenesis [goid GO:0006094] [evidence TAS]; go_process: glycolysis [goid GO:0006096] [evidence TAS] --- --- --- --- --- --- S0000605 // PGK1 SGDID:S0000605, Chr III from 137743-138993, Verified ORF // sgd // 11 // --- /// GENSCAN00000022470 // cdna:Genscan chromosome:SGD1:III:137743:138993:1 // ensembl // 11 // --- /// GENEFINDER00000023324 // cdna:GeneFinder chromosome:SGD1:III:137743:138993:1 // ensembl // 11 // --- /// YCR012W // cdna:known chromosome:SGD1:III:137743:138993:1 gene:YCR012W // ensembl // 11 // --- YCR013C // ensembl // 11 // Negative Strand Matching Probes No cerevisiae_gene -1.29174707334777 1.21578258898946 -1.31713635855083 -1.25924153971812 -1.41858750783923 Max fold change below threshold 4 1.41858750783923 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778308_at YDL116W.S1 Subunit of the nuclear pore complex (NPC), forms a subcomplex with Nup85p, Nup120p, Nup145p-C, Sec13p, and Seh1p that plays a role in nuclear mRNA export and NPC biogenesis 1.41857826813241 621.235198974609 908.469268798828 NUP84 6259 // DNA metabolism // inferred from genetic interaction /// 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6998 // nuclear membrane organization and biogenesis // inferred from mutant phenotype /// 6999 // nuclear pore organization and biogenesis // inferred from mutant phenotype 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement 881.041870117188 621.073852539063 621.396545410156 935.896667480469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL116W /GEN=NUP84 /DB_XREF=GI:6320087 /SEG=NC_001136:+251566,253746 /DEF=Subunit of the nuclear pore complex (NPC), forms a subcomplex with Nup85p, Nup120p, Nup145p-C, Sec13p, and Seh1p that plays a role in nuclear mRNA export and NPC biogenesis /NOTE=Nup84p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 9442897]; go_process: nuclear membrane organization and biogenesis [goid GO:0006998] [evidence IMP] [pmid 8565072]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence IMP] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0002274 // NUP84 SGDID:S0002274, Chr IV from 251566-253746, Verified ORF // sgd // 11 // --- /// GENSCAN00000025010 // cdna:Genscan chromosome:SGD1:IV:251566:253746:1 // ensembl // 11 // --- /// GENEFINDER00000023797 // cdna:GeneFinder chromosome:SGD1:IV:251845:253746:1 // ensembl // 11 // --- /// YDL116W // cdna:known chromosome:SGD1:IV:251566:253746:1 gene:YDL116W // ensembl // 11 // --- --- No cerevisiae_gene -1.17968064670244 -1.41857826813241 -1.06917464770727 -1.41784159668228 1.06226128317373 Max fold change below threshold 4 1.41857826813241 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771678_at YDL133W.S1 Hypothetical protein 1.41743340220626 1301.14239501953 1309.14056396484 --- --- --- --- 1288.416015625 1320.21435546875 1282.07043457031 1329.86511230469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL133W /GEN=RPL41B /DB_XREF=GI:6320069 /SEG=NC_001136:+222427,223740 /DEF=Hypothetical ORF /NOTE=Ydl133wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002291 // span:269-291,312-329,349-368,404-426 // numtm:4 S0002291 // YDL133W SGDID:S0002291, Chr IV from 222427-223740, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023616 // cdna:GeneFinder chromosome:SGD1:IV:222427:223740:1 // ensembl // 11 // --- /// GENSCAN00000025000 // cdna:Genscan chromosome:SGD1:IV:222427:223740:1 // ensembl // 11 // --- /// YDL133W // cdna:known chromosome:SGD1:IV:222427:223740:1 gene:YDL133W // ensembl // 11 // --- --- No cerevisiae_gene 1.41743340220626 1.02468018051477 1.18755504654607 -1.00494947928256 1.03217058479328 Max fold change below threshold 4 1.41743340220626 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774852_at YNL322C.S1 Cell wall glycoprotein involved in beta-glucan assembly; serves as a K1 killer toxin membrane receptor 1.41676233743457 2490.78912353516 2258.88488769531 KRE1 7047 // cell wall organization and biogenesis // traceable author statement 9277 // cell wall (sensu Fungi) // inferred from direct assay 5199 // structural constituent of cell wall // traceable author statement 2146.55908203125 1940.41418457031 3041.1640625 2371.21069335938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL322C /GEN=KRE1 /DB_XREF=GI:6324007 /SEG=NC_001146:-33293,34234 /DEF=cell wall beta-glucan assembly /NOTE=Kre1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 11956747]; go_function: structural constituent of cell wall [goid GO:0005199] [evidence TAS] [pmid 11853673]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence TAS] [pmid 9791887] --- --- --- --- --- S0005266 // span:13-35,255-277,290-312 // numtm:3 S0005266 // KRE1 SGDID:S0005266, Chr XIV from 34234-33293, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019785 // cdna:Genscan chromosome:SGD1:XIV:33293:34162:-1 // ensembl // 11 // --- /// GENEFINDER00000020644 // cdna:GeneFinder chromosome:SGD1:XIV:33293:34162:-1 // ensembl // 11 // --- /// YNL322C // cdna:known chromosome:SGD1:XIV:33293:34234:-1 gene:YNL322C // ensembl // 11 // --- --- No cerevisiae_gene -1.13404984163904 -1.10623757499824 1.02398585763507 1.41676233743457 1.1046566168193 Max fold change below threshold 4 1.41676233743457 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778372_at SPCC663.15c.S1 --- 1.41667881028886 --- --- --- --- 14.4076452255249 16.7929840087891 16.2964725494385 14.8727340698242 0.0561522990465164 0.171387001872063 0.149657994508743 0.030273400247097 M A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC663.15c /DEF=sequence orphan --- --- --- --- --- --- SPCC663.15c // |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- No No -1.05823470259196 1.16556062742566 -1.41667881028886 1.13109896130474 1.03228069799188 Max fold change below threshold 4 1.41667881028886 Max fold change below threshold MAAAAP No 4 0 MAAP 2 1 1 No No x = 1
1778093_at YER141W.S1 Protein required for the hydroxylation of heme O to form heme A, which is an essential prosthetic group for cytochrome c oxidase 1.41666429376439 6293.916015625 4666.884765625 COX15 6784 // heme a biosynthesis // inferred from genetic interaction /// 6784 // heme a biosynthesis // inferred from mutant phenotype /// 8535 // cytochrome c oxidase complex assembly // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay 16653 // oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor // inferred from mutant phenotype 4972.8681640625 7044.884765625 5542.947265625 4360.9013671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER141W /GEN=COX15 /DB_XREF=GI:6320989 /SEG=NC_001137:+453454,454914 /DEF=Protein required for the hydroxylation of heme O to form heme A, which is an essential prosthetic group for cytochrome c oxidase /NOTE=Cox15p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 9228094]; go_function: molecular_function unknown [goid GO:0005554] [evidence IMP] [pmid 9228094]; go_process: cytochrome c oxidase biogenesis [goid GO:0008535] [evidence IMP] [pmid 9228094]; go_process: heme a biosynthesis [goid GO:0006784] [evidence IGI,IMP] [pmid 11788607] --- --- --- --- --- S0000943 // span:85-107,167-189,201-219,242-264,298-320,365-387,400-422,427-449 // numtm:8 S0000943 // COX15 SGDID:S0000943, Chr V from 453454-454914, Verified ORF // sgd // 11 // --- /// GENSCAN00000016920 // cdna:Genscan chromosome:SGD1:V:453838:454914:1 // ensembl // 11 // --- /// YER141W // cdna:known chromosome:SGD1:V:453454:454914:1 gene:YER141W // ensembl // 11 // --- --- No cerevisiae_gene -1.21423221237237 1.41666429376439 -1.10313779720438 1.11463788758413 -1.1403303458041 Max fold change below threshold 4 1.41666429376439 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777784_at YJR107W.S1 Hypothetical protein 1.41654210237717 473.635437011719 521.332443237305 --- --- --- 16298 // lipase activity // inferred from sequence similarity 490.288055419922 482.172210693359 465.098663330078 552.376831054688 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR107W /GEN=ECM27 /DB_XREF=GI:6322567 /SEG=NC_001142:+627254,628240 /DEF=Hypothetical ORF /NOTE=Yjr107wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: lipase activity [goid GO:0016298] [evidence ISS] [pmid 10592175]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003868 // YJR107W SGDID:S0003868, Chr X from 627254-628240, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024217 // cdna:Genscan chromosome:SGD1:X:627254:628240:1 // ensembl // 11 // --- /// YJR107W // cdna:known chromosome:SGD1:X:627254:628240:1 gene:YJR107W // ensembl // 11 // --- --- No cerevisiae_gene -1.41654210237717 -1.01683183839005 -1.19055219744877 -1.05415924421173 1.12663734094356 Max fold change below threshold 4 1.41654210237717 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769642_at YGR124W.S1 Asparagine synthetase, isozyme of Asn1p; catalyzes the synthesis of L-asparagine from L-aspartate in the asparagine biosynthetic pathway 1.41634762666822 3651.68432617188 4316.76574707031 ASN2 6529 // asparagine biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 4066 // asparagine synthase (glutamine-hydrolyzing) activity // inferred from mutant phenotype /// 4066 // asparagine synthase (glutamine-hydrolyzing) activity // inferred from sequence similarity 4638.01806640625 4028.73608398438 3274.63256835938 3995.51342773438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR124W /GEN=ASN2 /DB_XREF=GI:6321563 /SEG=NC_001139:+739947,741665 /DEF=Asparagine synthetase, isozyme of Asn1p; catalyzes the synthesis of L-asparagine from L-aspartate in the asparagine biosynthetic pathway /NOTE=Asn2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: asparagine synthase (glutamine-hydrolyzing) activity [goid GO:0004066] [evidence IMP,ISS] [pmid 8951815]; go_process: asparagine biosynthesis [goid GO:0006529] [evidence TAS] [pmid 8951815] --- --- --- --- --- --- S0003356 // ASN2 SGDID:S0003356, Chr VII from 739949-741667, Verified ORF // sgd // 11 // --- /// GENSCAN00000019437 // cdna:Genscan chromosome:SGD1:VII:739949:741667:1 // ensembl // 11 // --- /// GENEFINDER00000021651 // cdna:GeneFinder chromosome:SGD1:VII:739949:741667:1 // ensembl // 11 // --- /// YGR124W // cdna:known chromosome:SGD1:VII:739949:741667:1 gene:YGR124W // ensembl // 11 // --- --- No cerevisiae_gene 1.03914109578182 -1.15123402717889 -1.28578293493035 -1.41634762666822 -1.16080652719423 Max fold change below threshold 4 1.41634762666822 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773882_at YLR054C.S1 Protein of unknown function proposed to be involved in the assembly of the spore wall 1.41628547991004 192.99974822998 195.029968261719 OSW2 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 5628 // prospore membrane // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 192.394027709961 190.285354614258 195.714141845703 197.665908813477 0.00122069998178631 0.000732421991415322 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR054C /GEN=IES3 /DB_XREF=GI:37362678 /SEG=NC_001144:-248718,250979 /DEF=Non-essential protein required for construction of the outer spore wall layers /NOTE=Ylr054cp --- --- --- --- --- --- S0004044 // OSW2 SGDID:S0004044, Chr XII from 250979-250949,250861-248718, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017861 // cdna:Genscan chromosome:SGD1:XII:248718:250211:-1 // ensembl // 11 // --- /// GENEFINDER00000024684 // cdna:GeneFinder chromosome:SGD1:XII:248718:250223:-1 // ensembl // 11 // --- /// YLR054C // cdna:known chromosome:SGD1:XII:248718:250979:-1 gene:YLR054C // ensembl // 11 // --- --- No cerevisiae_gene -1.41628547991004 -1.01108163631393 -1.01689579361316 1.01725684614674 1.02740148000573 Max fold change below threshold 4 1.41628547991004 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778730_s_at YBR031W.S1 Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Ap and has similarity to E. coli L4 and rat L4 ribosomal proteins /// N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Bp and has similarity to E. coli L4 and rat L4 ribosomal proteins 1.41610178170451 6899.5595703125 6543.13159179688 RPL4B /// RPL4A 6412 // protein biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5842 // cytosolic large ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 7669.99169921875 8050.96142578125 5748.15771484375 5416.271484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR031W /GEN=RPL4A /DB_XREF=GI:6319505 /SEG=NC_001134:+300128,301216 /DEF=N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Bp and has similarity to E. coli L4 and rat L4 ribosomal proteins /NOTE=Rpl4ap; go_component: cytosolic large ribosomal subunit (sensu Eukarya) [goid GO:0005842] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0000235 // RPL4A SGDID:S0000235, Chr II from 300166-301254, Verified ORF // sgd // 11 // --- /// S0002419 // RPL4B SGDID:S0002419, Chr IV from 471850-472938, Verified ORF // sgd // 11 // --- /// GENSCAN00000021164 // cdna:Genscan chromosome:SGD1:II:300166:301254:1 // ensembl // 11 // --- /// GENEFINDER00000022285 // cdna:GeneFinder chromosome:SGD1:II:300166:301254:1 // ensembl // 11 // --- /// GENEFINDER00000023776 // cdna:GeneFinder chromosome:SGD1:IV:471850:472938:1 // ensembl // 11 // --- /// GENSCAN00000025108 // cdna:Genscan chromosome:SGD1:IV:471850:472938:1 // ensembl // 11 // --- /// YBR031W // cdna:known chromosome:SGD1:II:300166:301254:1 gene:YBR031W // ensembl // 11 // --- /// YDR012W // cdna:known chromosome:SGD1:IV:471850:472938:1 gene:YDR012W // ensembl // 11 // --- --- No cerevisiae_gene -1.24715559728229 1.04967016152068 -1.3498197807637 -1.33433911867313 -1.41610178170451 Max fold change below threshold 4 1.41610178170451 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772327_at YJR059W.S1 Putative serine/threonine protein kinase involved in regulation of ion transport across plasma membrane; enhances spermine uptake 1.41559232178525 2975.62658691406 2777.47290039063 PTK2 82 // G1/S transition of mitotic cell cycle // inferred from genetic interaction /// 6873 // cell ion homeostasis // inferred from genetic interaction /// 6873 // cell ion homeostasis // inferred from mutant phenotype /// 15846 // polyamine transport // inferred from genetic interaction /// 15846 // polyamine transport // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4672 // protein kinase activity // inferred from sequence similarity 2885.056640625 3409.3955078125 2541.85766601563 2669.88916015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR059W /GEN=PTK2 /DB_XREF=GI:6322519 /SEG=NC_001142:+545701,548157 /DEF=Putative serine/threonine protein kinase that enhances spermine uptake /NOTE=Ptk2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12206772]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12206772]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 8920934]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IGI] [pmid 12518319]; go_process: cell ion homeostasis [goid GO:0006873] [evidence IGI,IMP] [pmid 11003661]; go_process: polyamine transport [goid GO:0015846] [evidence IGI,IMP] [pmid 8920934] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-54 /// hanks // 3.1.2 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk2 // 3.0E-55 --- --- S0003820 // PTK2 SGDID:S0003820, Chr X from 545701-548157, Verified ORF // sgd // 10 // --- /// GENSCAN00000024179 // cdna:Genscan chromosome:SGD1:X:546214:548157:1 // ensembl // 10 // --- /// GENEFINDER00000024291 // cdna:GeneFinder chromosome:SGD1:X:546214:548157:1 // ensembl // 10 // --- /// YJR059W // cdna:known chromosome:SGD1:X:545701:548157:1 gene:YJR059W // ensembl // 10 // --- --- No cerevisiae_gene -1.11210906829888 1.18174300629117 -1.41559232178525 -1.13501895845621 -1.08059041689062 Max fold change below threshold 4 1.41559232178525 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777498_at YER120W.S1 Integral ER membrane protein that regulates phospholipid metabolism via an interaction with the FFAT motif of Opi1p, also involved in telomeric silencing, disruption causes inositol auxotrophy above 34 degrees C, VAP homolog 1.41547321748273 2315.10949707031 3042.50598144531 SCS2 6020 // myo-inositol metabolism // inferred from mutant phenotype /// 6348 // chromatin silencing at telomere // inferred from direct assay /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 45047 // protein-ER targeting // inferred from mutant phenotype /// 45047 // protein-ER targeting // inferred from physical interaction 5783 // endoplasmic reticulum // inferred from direct assay /// 16021 // integral to membrane // inferred from direct assay 5515 // protein binding // inferred from direct assay 3021.77026367188 2134.81274414063 2495.40625 3063.24169921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER120W /GEN=SCS2 /DB_XREF=GI:6320966 /SEG=NC_001137:+401131,401865 /DEF=Suppressor of Choline SynthesisLikely to be involved in regulating INO1 expression, suppressor of a dominant nuclear mutation that is inositol-dependent in the presence of choline /NOTE=Scs2p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 9537365]; go_component: integral to membrane [goid GO:0016021] [evidence IDA] [pmid 9537365]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 12727870]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IDA,IMP] [pmid 11333225]; go_process: myo-inositol metabolism [goid GO:0006020] [evidence IMP] [pmid 9537365]; go_process: protein-ER targeting [goid GO:0045047] [evidence IMP,IPI] [pmid 12727870] --- --- --- --- --- S0000922 // span:226-243 // numtm:1 S0000922 // SCS2 SGDID:S0000922, Chr V from 401131-401865, Verified ORF // sgd // 11 // --- /// GENSCAN00000016901 // cdna:Genscan chromosome:SGD1:V:401131:401865:1 // ensembl // 11 // --- /// GENEFINDER00000019757 // cdna:GeneFinder chromosome:SGD1:V:401131:401865:1 // ensembl // 11 // --- /// YER120W // cdna:known chromosome:SGD1:V:401131:401865:1 gene:YER120W // ensembl // 11 // --- --- No cerevisiae_gene 1.38966973955519 -1.41547321748273 1.28264188965314 -1.21093319521496 1.01372421856335 Max fold change below threshold 4 1.41547321748273 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779893_at SPAC29B12.02c.S1 --- 1.41488687377352 --- --- --- --- 0.269735425710678 0.259637892246246 0.335414439439774 0.381645113229752 0.99804699420929 0.985840022563934 0.997070014476776 0.932372987270355 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC29B12.02c /DEF=histone lysine methyltransferase (predicted) --- --- --- --- --- --- SPAC29B12.02c // |set2||histone lysine methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.14623886570868 -1.03889083129228 -1.07034625110558 1.24349420754078 1.41488687377352 Max fold change below threshold 0 1.41488687377352 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778975_at YDR328C.S1 Evolutionarily conserved kinetochore protein that is part of multiple protein complexes, including the SCF ubiquitin ligase complex, the CBF3 complex that binds centromeric DNA, and the RAVE complex that regulates assembly of the V-ATPase 1.41459967283239 1890.90618896484 1425.95953369141 SKP1 82 // G1/S transition of mitotic cell cycle // traceable author statement /// 86 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 6461 // protein complex assembly // inferred from direct assay /// 7035 // vacuolar acidification // inferred from genetic interaction /// 7035 // vacuolar acidification // inferred from mutant phenotype /// 16567 // protein ubiquitination // inferred from genetic interaction /// 16567 // protein ubiquitination // inferred from physical interaction /// 31146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from direct assay /// 43254 // regulation of protein complex assembly // inferred from physical interaction /// 51382 // kinetochore assembly // inferred from direct assay /// 51382 // kinetochore assembly // inferred from mutant phenotype 152 // nuclear ubiquitin ligase complex // traceable author statement /// 776 // kinetochore // traceable author statement /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 19005 // SCF ubiquitin ligase complex // traceable author statement /// 19005 // SCF ubiquitin ligase complex // inferred from direct assay /// 43291 // RAVE complex // inferred from physical interaction 4842 // ubiquitin-protein ligase activity // traceable author statement /// 5515 // protein binding // inferred from physical interaction 1411.55908203125 1785.02136230469 1996.791015625 1440.35998535156 0.00122069998178631 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR328C /GEN=SKP1 /DB_XREF=GI:6320535 /SEG=NC_001136:-1125425,1126009 /DEF=Involved in kinetochore function and ubiquitin-mediated proteolysis /NOTE=Skp1p; go_component: SCF ubiquitin ligase complex [goid GO:0019005] [evidence TAS] [pmid 9716410]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11080155]; go_component: kinetochore [goid GO:0000776] [evidence TAS] [pmid 12769845]; go_component: nuclear ubiquitin ligase complex [goid GO:0000152] [evidence TAS] [pmid 9346231]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11080155]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12769845]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 9346231]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence TAS] [pmid 9346231]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence IMP] [pmid 10409741]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 9346231] --- --- --- --- --- --- S0002736 // SKP1 SGDID:S0002736, Chr IV from 1126011-1125427, reverse complement, Verified ORF // sgd // 9 // --- /// U61764 // Saccharomyces cerevisiae Skp1p (SKP1) mRNA, complete cds. // gb // 9 // --- /// GENEFINDER00000023828 // cdna:GeneFinder chromosome:SGD1:IV:1125427:1126011:-1 // ensembl // 9 // --- /// GENSCAN00000025357 // cdna:Genscan chromosome:SGD1:IV:1125427:1126011:-1 // ensembl // 9 // --- /// YDR328C // cdna:known chromosome:SGD1:IV:1125427:1126011:-1 gene:YDR328C // ensembl // 9 // --- YDR327W // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene -1.21636591038427 1.26457431716993 1.3298252811521 1.41459967283239 1.02040361164257 Max fold change below threshold 4 1.41459967283239 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771527_at YER088C.S1 Protein of unknown function, involved in telomeric gene silencing and filamentation 1.41456488780238 2468.46765136719 1999.02380371094 DOT6 183 // chromatin silencing at ribosomal DNA // inferred from genetic interaction /// 6348 // chromatin silencing at telomere // inferred from genetic interaction /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 9826 // unidimensional cell growth // inferred from mutant phenotype /// 30447 // filamentous growth // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 2023.33459472656 2573.21362304688 2363.7216796875 1974.71301269531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER088C /GEN=DOT6 /DB_XREF=GI:6320933 /SEG=NC_001137:-333172,335184 /DEF=Protein of unknown function, involved in telomeric gene silencing and filamentation /NOTE=Dot6p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin silencing at ribosomal DNA [goid GO:0000183] [evidence IGI] [pmid 9755194]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IGI] [pmid 9755194]; go_process: filamentous growth [goid GO:0030447] [evidence IGI] [pmid 9832522]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IGI] [pmid 9832522]; go_process: unidimensional cell growth [goid GO:0009826] [evidence IMP] [pmid 9832522] --- --- --- --- scop // a.4.1.Myb // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb // 0.0750000029802322 --- S0000890 // DOT6 SGDID:S0000890, Chr V from 335184-333172, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016875 // cdna:Genscan chromosome:SGD1:V:333172:335136:-1 // ensembl // 11 // --- /// GENEFINDER00000019728 // cdna:GeneFinder chromosome:SGD1:V:333172:335136:-1 // ensembl // 11 // --- /// YER088C // cdna:known chromosome:SGD1:V:333172:335184:-1 gene:YER088C // ensembl // 11 // --- --- No cerevisiae_gene -1.41456488780238 1.27176870783185 -1.18022536358963 1.16823074436037 -1.02462210038556 Max fold change below threshold 4 1.41456488780238 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773680_at YGR086C.S1 Long chain base-responsive inhibitor of protein kinases Phk1p and Phk2p, acts along with Lsp1p to down-regulate heat stress resistance via regulation of the Pkc1p and Ypk1p pathways; phosphorylated by Phk1p and Phk2p 1.41442207386622 6789.06030273438 6561.4951171875 PIL1 9408 // response to heat // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4860 // protein kinase inhibitor activity // inferred from mutant phenotype 7622.8330078125 8188.75830078125 5389.3623046875 5500.1572265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR086C /GEN=PIL1 /DB_XREF=GI:6321523 /SEG=NC_001139:-649600,650619 /DEF=Phosphorylation Inhibited by Long chain base /NOTE=Pil1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14576278]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003318 // PIL1 SGDID:S0003318, Chr VII from 650621-649602, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019405 // cdna:Genscan chromosome:SGD1:VII:649602:650621:-1 // ensembl // 11 // --- /// GENEFINDER00000021502 // cdna:GeneFinder chromosome:SGD1:VII:649602:650621:-1 // ensembl // 11 // --- /// YGR086C // cdna:known chromosome:SGD1:VII:649602:650621:-1 gene:YGR086C // ensembl // 11 // --- --- No cerevisiae_gene -1.38348700082141 1.07424080947185 -1.30262608509327 -1.41442207386622 -1.38593001869087 Max fold change below threshold 4 1.41442207386622 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779426_at YDR238C.S1 Essential subunit of the COP II vesicle coat, involved in endoplasmic-to-Golgi protein trafficking and maintenance of normal ER morphology; similar to mammalian beta-coat protein (beta-COP) 1.41432107013226 1649.14971923828 1296.73602294922 SEC26 6888 // ER to Golgi transport // inferred from mutant phenotype 30126 // COPI vesicle coat // inferred from genetic interaction /// 30126 // COPI vesicle coat // inferred from sequence similarity /// 30135 // coated vesicle // inferred from sequence similarity --- 1258.57873535156 1518.26501464844 1780.03442382813 1334.89331054688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR238C /GEN=SEC26 /DB_XREF=GI:6320444 /SEG=NC_001136:-937887,940808 /DEF=Involved in endoplasmic-to-Golgi protein trafficking /NOTE=Sec26p; go_component: COPI vesicle coat [goid GO:0030126] [evidence IGI,ISS] [pmid 7929113]; go_component: coated vesicle [goid GO:0030135] [evidence ISS] [pmid 7929113]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 7929113] --- --- --- --- --- --- S0002646 // SEC26 SGDID:S0002646, Chr IV from 940810-937889, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023626 // cdna:GeneFinder chromosome:SGD1:IV:937889:940810:-1 // ensembl // 11 // --- /// GENSCAN00000025282 // cdna:Genscan chromosome:SGD1:IV:937889:940753:-1 // ensembl // 11 // --- /// YDR238C // cdna:known chromosome:SGD1:IV:937889:940810:-1 gene:YDR238C // ensembl // 11 // --- --- No cerevisiae_gene 1.12306070923216 1.20633296273223 1.13265569877512 1.41432107013226 1.06063551929788 Max fold change below threshold 4 1.41432107013226 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779046_at YJL171C.S1 Hypothetical protein 1.41414920396807 3746.7724609375 2743.20983886719 --- --- 5739 // mitochondrion // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 2749.14013671875 3887.6943359375 3605.8505859375 2737.27954101563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL171C /GEN=CPS1 /DB_XREF=GI:6322290 /SEG=NC_001142:-99698,100888 /DEF=Hypothetical ORF /NOTE=Yjl171cp; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003707 // YJL171C SGDID:S0003707, Chr X from 100888-99698, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024008 // cdna:Genscan chromosome:SGD1:X:99698:100858:-1 // ensembl // 11 // --- /// GENEFINDER00000024494 // cdna:GeneFinder chromosome:SGD1:X:99698:100888:-1 // ensembl // 11 // --- /// YJL171C // cdna:known chromosome:SGD1:X:99698:100888:-1 gene:YJL171C // ensembl // 11 // --- --- No cerevisiae_gene 1.13254659349275 1.41414920396807 -1.05030583495676 1.31162851168485 -1.00433298664802 Max fold change below threshold 4 1.41414920396807 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779186_at YMR024W.S1 Mitochondrial ribosomal protein of the large subunit 1.41360072284265 887.434356689453 878.171966552734 MRPL3 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement /// 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // traceable author statement 849.443054199219 852.84716796875 922.021545410156 906.90087890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR024W /GEN=MRPL3 /DB_XREF=GI:6323666 /SEG=NC_001145:+321874,323046 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl3p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0004626 // MRPL3 SGDID:S0004626, Chr XIII from 321874-323046, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021860 // cdna:GeneFinder chromosome:SGD1:XIII:321874:323046:1 // ensembl // 11 // --- /// GENSCAN00000018736 // cdna:Genscan chromosome:SGD1:XIII:321910:323046:1 // ensembl // 11 // --- /// YMR024W // cdna:known chromosome:SGD1:XIII:321874:323046:1 gene:YMR024W // ensembl // 11 // --- --- No cerevisiae_gene 1.41360072284265 1.00400746554193 -1.01936580981179 1.08544244473146 1.0676417617673 Max fold change below threshold 4 1.41360072284265 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776081_at YDR510W.S1 Ubiquitin-like protein of the SUMO family, conjugated to lysine residues of target proteins; regulates chromatid cohesion, chromosome segregation, APC-mediated proteolysis, DNA replication and septin ring dynamics 1.41336223220491 1995.79119873047 2520.71655273438 SMT3 16925 // protein sumoylation // traceable author statement 5634 // nucleus // inferred from direct assay /// 5940 // septin ring // inferred from direct assay 31386 // protein tag // inferred from direct assay /// 31386 // protein tag // inferred from sequence similarity 2651.84521484375 2115.31518554688 1876.26721191406 2389.587890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR510W /GEN=SMT3 /DB_XREF=GI:6320718 /SEG=NC_001136:+1469388,1469693 /DEF=may be involved in function and/or structure of the eukaryotic kinetochore homologous to SUMO-1 /NOTE=Smt3p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10364461]; go_component: septin ring [goid GO:0005940] [evidence IDA] [pmid 10364461]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 10364461]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 9019411]; go_process: protein sumoylation [goid GO:0016925] [evidence TAS] [pmid 11595179] --- --- --- --- --- --- S0002918 // SMT3 SGDID:S0002918, Chr IV from 1469390-1469695, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023907 // cdna:GeneFinder chromosome:SGD1:IV:1469390:1469695:1 // ensembl // 11 // --- /// GENSCAN00000025497 // cdna:Genscan chromosome:SGD1:IV:1469390:1469695:1 // ensembl // 11 // --- /// YDR510W // cdna:known chromosome:SGD1:IV:1469390:1469695:1 gene:YDR510W // ensembl // 11 // --- --- No cerevisiae_gene -1.08584843708498 -1.25364070232312 -1.251934962753 -1.41336223220491 -1.10975002227273 Max fold change below threshold 4 1.41336223220491 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773255_at YGR008C.S1 Protein involved in regulation of the mitochondrial F1F0-ATP synthase; Stf1p and Stf2p act as stabilizing factors that enhance inhibitory action of the Inh1p protein 1.41289845776932 7123.611328125 6032.3828125 STF2 9269 // response to dessication // inferred from expression pattern /// 9269 // response to dessication // inferred from sequence similarity /// 15986 // ATP synthesis coupled proton transport // traceable author statement 5753 // proton-transporting ATP synthase complex (sensu Eukaryota) // traceable author statement --- 7064.65234375 8793.982421875 5453.240234375 5000.11328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR008C /GEN=STF2 /DB_XREF=GI:6321445 /SEG=NC_001139:-508112,508366 /DEF=ATPase stabilizing factor /NOTE=Stf2p; go_component: proton-transporting ATP synthase complex (sensu Eukarya) [goid GO:0005753] [evidence TAS] [pmid 10838056]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 10838056]; go_process: ATP synthesis coupled proton transport [goid GO:0015986] [evidence TAS] [pmid 10838056]; go_process: response to dessication [goid GO:0009269] [evidence IEP,ISS] [pmid 10681550] --- --- --- --- --- --- S0003240 // STF2 SGDID:S0003240, Chr VII from 508368-508114, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019347 // cdna:Genscan chromosome:SGD1:VII:508114:508368:-1 // ensembl // 11 // --- /// GENEFINDER00000021711 // cdna:GeneFinder chromosome:SGD1:VII:508114:508368:-1 // ensembl // 11 // --- /// YGR008C // cdna:known chromosome:SGD1:VII:508114:508368:-1 gene:YGR008C // ensembl // 11 // --- --- No cerevisiae_gene -1.40444727802341 1.24478629576938 -1.25739981257728 -1.29549626279387 -1.41289845776932 Max fold change below threshold 4 1.41289845776932 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769993_at YBR186W.S1 Nucleolar component of the pachytene checkpoint, which prevents chromosome segregation when recombination and chromosome synapsis are defective; also represses meiotic interhomolog recombination in the rDNA 1.41281619886185 12.6778988838196 18.1750679016113 PCH2 40020 // regulation of meiosis // traceable author statement 5730 // nucleolus // traceable author statement --- 15.0654392242432 14.1705799102783 11.1852178573608 21.2846965789795 0.00122069998178631 0.00415039015933871 0.00292969006113708 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR186W /GEN=PCH2 /DB_XREF=GI:9755327 /SEG=NC_001134:+600510,602317 /DEF=Pachytene CHeckpoint /NOTE=Pch2p; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 11029058]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: regulation of meiosis [goid GO:0040020] [evidence TAS] [pmid 11029058] --- --- --- --- --- --- S0000390 // PCH2 SGDID:S0000390, Chr II from 600548-602098,602212-602355, intron sequence removed, Verified ORF // sgd // 11 // --- /// YBR186W // cdna:known chromosome:SGD1:II:600548:602355:1 gene:YBR186W // ensembl // 11 // --- GENEFINDER00000022303 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 1.37855746864424 -1.06314909620006 -1.26356259963781 -1.34690619497669 1.41281619886185 Max fold change below threshold 4 1.41281619886185 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778498_at YBR139W.S1 Hypothetical protein 1.41277011120256 3213.44287109375 2317.82885742188 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay 4186 // carboxypeptidase C activity // inferred from sequence similarity 2372.54443359375 3351.85986328125 3075.02587890625 2263.11328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR139W /GEN=MEC1 /DB_XREF=GI:6319615 /SEG=NC_001134:+515620,517146 /DEF=Hypothetical ORF /NOTE=Ybr139wp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: carboxypeptidase C activity [goid GO:0004186] [evidence ISS] [pmid 10592175]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.1.AraC type transcriptional activator // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; AraC type transcriptional activator // 9.80000019073486 --- S0000343 // YBR139W SGDID:S0000343, Chr II from 515658-517184, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022290 // cdna:GeneFinder chromosome:SGD1:II:515658:517184:1 // ensembl // 11 // --- /// GENSCAN00000021251 // cdna:Genscan chromosome:SGD1:II:516108:517184:1 // ensembl // 11 // --- /// YBR139W // cdna:known chromosome:SGD1:II:515658:517184:1 gene:YBR139W // ensembl // 11 // --- --- No cerevisiae_gene -1.30711387319064 1.41277011120256 1.20843425490706 1.29608779307388 -1.04835425307712 Max fold change below threshold 4 1.41277011120256 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775022_at YNL050C.S1 Hypothetical protein 1.41274734045802 463.047515869141 673.627990722656 --- --- --- --- 635.224975585938 449.638061523438 476.456970214844 712.031005859375 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL050C /GEN=COG5 /DB_XREF=GI:6324278 /SEG=NC_001146:-534077,534980 /DEF=Hypothetical ORF /NOTE=Ynl050cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004995 // YNL050C SGDID:S0004995, Chr XIV from 534981-534965,534873-534078, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020651 // cdna:GeneFinder chromosome:SGD1:XIV:534078:535145:-1 // ensembl // 11 // --- /// YNL050C // cdna:known chromosome:SGD1:XIV:534078:534981:-1 gene:YNL050C // ensembl // 11 // --- --- No cerevisiae_gene -1.11422003507683 -1.41274734045802 1.22486977212452 -1.33322632534792 1.12091154036031 Max fold change below threshold 4 1.41274734045802 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770364_at YCR011C.S1 Putative ATP-dependent permease of the ABC transporter family of proteins 1.41268282535086 2070.01373291016 2787.86401367188 ADP1 6810 // transport // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from sequence similarity 2891.3701171875 2046.72277832031 2093.3046875 2684.35791015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR011C /GEN=ADP1 /DB_XREF=GI:10383780 /SEG=NC_001135:-133721,136870 /DEF=Shows homology to ATP-dependent permeases /NOTE=Adp1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11914276]; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 9020838]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence ISS] [pmid 9020838]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 9020838] --- --- --- --- --- S0000604 // span:7-25,325-344,794-813,828-850,909-931,936-958,998-1020,1025-1046 // numtm:8 S0000604 // ADP1 SGDID:S0000604, Chr III from 136870-133721, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022469 // cdna:Genscan chromosome:SGD1:III:133721:136870:-1 // ensembl // 11 // --- /// GENEFINDER00000023364 // cdna:GeneFinder chromosome:SGD1:III:133721:136870:-1 // ensembl // 11 // --- /// YCR011C // cdna:known chromosome:SGD1:III:133721:136870:-1 gene:YCR011C // ensembl // 11 // --- --- No cerevisiae_gene -1.23083750418055 -1.41268282535086 -1.00779006471255 -1.3812466644025 -1.07711796040611 Max fold change below threshold 4 1.41268282535086 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771925_at YJL164C.S1 Subunit of cytoplasmic cAMP-dependent protein kinase, which contains redundant catalytic subunits Tpk1p, Tpk2p, and Tpk3p and regulatory subunit Bcy1p; promotes vegetative growth in response to nutrients; inhibits filamentous growth 1.4126120761581 2571.83666992188 2869.78356933594 TPK1 6468 // protein amino acid phosphorylation // traceable author statement /// 7124 // pseudohyphal growth // inferred from mutant phenotype /// 7265 // Ras protein signal transduction // inferred from mutant phenotype 5737 // cytoplasm // traceable author statement /// 5952 // cAMP-dependent protein kinase complex // traceable author statement /// 5952 // cAMP-dependent protein kinase complex // inferred from mutant phenotype 4674 // protein serine/threonine kinase activity // traceable author statement /// 4691 // cAMP-dependent protein kinase activity // traceable author statement 2900.490234375 2534.49047851563 2609.18286132813 2839.07690429688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL164C /GEN=TPK1 /DB_XREF=GI:6322297 /SEG=NC_001142:-109959,111152 /DEF=putative catalytic subunit of cAMP-dependent protein kinase /NOTE=Tpk1p; go_component: cAMP-dependent protein kinase complex [goid GO:0005952] [evidence TAS] [pmid 7826397]; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 7826397]; go_function: cAMP-dependent protein kinase activity [goid GO:0004691] [evidence TAS] [pmid 2823100]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence TAS] [pmid 2823100]; go_process: RAS protein signal transduction [goid GO:0007265] [evidence IMP] [pmid 2823100]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 2823100]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 10373537] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-76 /// hanks // 1.1.12 // AGC group; AGC I Cyclic nucleotide regulated protein kinase (PKA & PKG); TPK1 // 1.0E-150 --- --- S0003700 // TPK1 SGDID:S0003700, Chr X from 111152-109959, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024013 // cdna:Genscan chromosome:SGD1:X:109959:111152:-1 // ensembl // 11 // --- /// GENEFINDER00000024303 // cdna:GeneFinder chromosome:SGD1:X:109959:111152:-1 // ensembl // 11 // --- /// YJL164C // cdna:known chromosome:SGD1:X:109959:111152:-1 gene:YJL164C // ensembl // 11 // --- --- No cerevisiae_gene -1.4126120761581 -1.14440762708003 -1.1471465179264 -1.11164697475385 -1.02163144294724 Max fold change below threshold 4 1.4126120761581 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778282_at YNL104C.S1 Alpha-isopropylmalate synthase (2-isopropylmalate synthase); the main isozyme responsible for the first step in the leucine biosynthesis pathway 1.41254656093671 6277.06201171875 5861.55249023438 LEU4 9098 // leucine biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 3852 // 2-isopropylmalate synthase activity // inferred from direct assay 6861.32421875 7300.55810546875 5253.56591796875 4861.78076171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL104C /GEN=LEU4 /DB_XREF=GI:6324225 /SEG=NC_001146:-424895,426754 /DEF=leucine biosynthesis /NOTE=Leu4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: 2-isopropylmalate synthase activity [goid GO:0003852] [evidence IDA] [pmid 3275644]; go_process: leucine biosynthesis [goid GO:0009098] [evidence TAS] [pmid 9765846] --- --- --- --- --- --- S0005048 // LEU4 SGDID:S0005048, Chr XIV from 426754-424895, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019949 // cdna:Genscan chromosome:SGD1:XIV:424895:426754:-1 // ensembl // 11 // --- /// GENEFINDER00000020518 // cdna:GeneFinder chromosome:SGD1:XIV:424895:426754:-1 // ensembl // 11 // --- /// YNL104C // cdna:known chromosome:SGD1:XIV:424895:426754:-1 gene:YNL104C // ensembl // 11 // --- --- No cerevisiae_gene -1.41254656093671 1.06401590607225 -1.39056737199836 -1.30603181265552 -1.41127799771958 Max fold change below threshold 4 1.41254656093671 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779408_at YBR126C.S1 Synthase subunit of trehalose-6-phosphate synthase/phosphatase complex, which synthesizes the storage carbohydrate trehalose; also found in a monomeric form; expression is induced by the stress response and repressed by the Ras-cAMP pathway 1.4113522958676 6941.7021484375 6926.916015625 TPS1 5975 // carbohydrate metabolism // inferred from mutant phenotype /// 5975 // carbohydrate metabolism // inferred from direct assay /// 5992 // trehalose biosynthesis // inferred from direct assay /// 5992 // trehalose biosynthesis // inferred from mutant phenotype /// 6950 // response to stress // inferred from direct assay /// 6950 // response to stress // inferred from genetic interaction /// 6950 // response to stress // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5946 // alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) // inferred from mutant phenotype /// 5946 // alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) // inferred from physical interaction /// 5946 // alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) // inferred from genetic interaction /// 5946 // alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) // inferred from direct assay 3825 // alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity // inferred from mutant phenotype /// 3825 // alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity // inferred from direct assay 8026.59619140625 8196.2373046875 5687.1669921875 5827.23583984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR126C /GEN=TPS1 /DB_XREF=GI:6319602 /SEG=NC_001134:-488861,490348 /DEF=Probable regulator of glucose influx into the cell & into glycolytic pathway, indirectly regulating glucose-induced signalling (activation & inactivation) & initial step(s) of glucose metabolism. Homologue of E. coli otsA protein /NOTE=Tps1p; go_component: alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) [goid GO:0005946] [evidence IDA] [pmid 1425702]; go_component: alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) [goid GO:0005946] [evidence IGI,IMP,IPI] [pmid 9837904]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity [goid GO:0003825] [evidence IDA,IMP] [pmid 1425702]; go_process: carbohydrate metabolism [goid GO:0005975] [evidence IDA,IMP] [pmid 1425702]; go_process: response to stress [goid GO:0006950] [evidence IGI,IMP] [pmid 11483159]; go_process: response to stress [goid GO:0006950] [evidence IDA] [pmid 9660948] --- --- --- --- --- --- S0000330 // TPS1 SGDID:S0000330, Chr II from 490386-488899, reverse complement, Verified ORF // sgd // 11 // --- /// X68214 // S.cerevisiae TPS1 mRNA for alpha,alpha-trehalose-phosphate synthase. // gb // 11 // --- /// AF061037 // Saccharomyces cerevisiae trehalose-6-phosphate synthase (TPS1) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000021241 // cdna:Genscan chromosome:SGD1:II:488899:490386:-1 // ensembl // 11 // --- /// GENEFINDER00000022217 // cdna:GeneFinder chromosome:SGD1:II:488899:490386:-1 // ensembl // 11 // --- /// YBR126C // cdna:known chromosome:SGD1:II:488899:490386:-1 gene:YBR126C // ensembl // 11 // --- --- No cerevisiae_gene -1.39833232489211 1.02113487576002 -1.2068066859206 -1.4113522958676 -1.37742772251028 Max fold change below threshold 4 1.4113522958676 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774504_at YOR357C.S1 Sorting nexin required to maintain late-Golgi resident enzymes in their proper location by recycling molecules from the prevacuolar compartment; contains a PX domain and sequence similarity to human Snx3p 1.41104343694135 579.168762207031 391.569595336914 GRD19 8104 // protein localization // inferred from mutant phenotype 5829 // cytosol // inferred from direct assay 5515 // protein binding // inferred from direct assay 421.501739501953 594.757263183594 563.580261230469 361.637451171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR357C /GEN=GRD19 /DB_XREF=GI:6324933 /SEG=NC_001147:-1009220,1009708 /DEF=Sorting nexin required to maintain late-Golgi resident enzymes in their proper location by recycling molecules from the prevacuolar compartment; contains a PX domain and sequence similarity to human Snx3p /NOTE=Grd19p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 9456318]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 9456318]; go_process: protein localization [goid GO:0008104] [evidence IMP] [pmid 9456318] --- --- --- --- --- --- S0005884 // GRD19 SGDID:S0005884, Chr XV from 1009708-1009220, reverse complement, Verified ORF // sgd // 11 // --- /// YOR357C // cdna:known chromosome:SGD1:XV:1009220:1009708:-1 gene:YOR357C // ensembl // 11 // --- --- No cerevisiae_gene 1.35805775494797 1.41104343694135 1.22152868325556 1.33707695227165 -1.16553674995798 Max fold change below threshold 4 1.41104343694135 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770630_at SPBC1773.03c.S1 --- 1.41068276971046 --- --- --- --- 10.9767246246338 15.269082069397 13.0514154434204 12.9494380950928 0.0952147990465164 0.0561522990465164 0.0239257998764515 0.00805663969367743 A M P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC1773.03c /DEF=aminotransferase (predicted) --- --- --- --- --- --- SPBC1773.03c // |||aminotransferase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.09943877655314 1.39104173526685 -1.41068276971046 1.18900818684388 1.17971786101219 Max fold change below threshold 4 1.41068276971046 Max fold change below threshold APMMPP No 4 0 AMPP 1 2 1 No No 1 < x = 2
1773722_at YNL186W.S1 Ubiquitin-specific protease that deubiquitinates ubiquitin-protein moieties; may regulate silencing by acting on Sir4p; involved in posttranscriptionally regulating Gap1p and possibly other transporters; primarily located in the nucleus 1.41014907133026 1976.82958984375 2524.34094238281 UBP10 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 16579 // protein deubiquitination // traceable author statement /// 16579 // protein deubiquitination // inferred from direct assay /// 16579 // protein deubiquitination // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 4843 // ubiquitin-specific protease activity // inferred from direct assay 2539.90087890625 2152.50146484375 1801.15771484375 2508.78100585938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL186W /GEN=UBP10 /DB_XREF=GI:6324143 /SEG=NC_001146:+289498,291876 /DEF=Ubiquitin-specific protease that deubiquitinates ubiquitin-protein moeties; may regulate silencing by acting on Sir4p; involved in posttranscriptionally regulating Gap1p and possibly other transporters; primarily located in the nucleus /NOTE=Ubp10p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: ubiquitin-specific protease activity [goid GO:0004843] [evidence IDA] [pmid 10490600]; go_process: protein deubiquitination [goid GO:0016579] [evidence TAS] [pmid 8982460] --- --- --- --- --- --- S0005130 // UBP10 SGDID:S0005130, Chr XIV from 289498-291876, Verified ORF // sgd // 11 // --- /// GENSCAN00000019892 // cdna:Genscan chromosome:SGD1:XIV:289498:291966:1 // ensembl // 11 // --- /// GENEFINDER00000020413 // cdna:GeneFinder chromosome:SGD1:XIV:289498:291966:1 // ensembl // 11 // --- /// YNL186W // cdna:known chromosome:SGD1:XIV:289498:291876:1 gene:YNL186W // ensembl // 11 // --- --- No cerevisiae_gene -1.24854794698759 -1.17997637650417 -1.12720771752397 -1.41014907133026 -1.01240438004521 Max fold change below threshold 4 1.41014907133026 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777260_at YNL208W.S1 Hypothetical protein 1.4092764715478 7411.68920898438 6670.7724609375 --- --- 5739 // mitochondrion // inferred from direct assay --- 7803.9716796875 9034.947265625 5788.43115234375 5537.5732421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL208W /GEN=SSB2 /DB_XREF=GI:42742305 /SEG=NC_001146:+254417,255016 /DEF=Hypothetical ORF /NOTE=Ynl208wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005152 // YNL208W SGDID:S0005152, Chr XIV from 254417-255016, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019874 // cdna:Genscan chromosome:SGD1:XIV:254417:255016:1 // ensembl // 11 // --- /// GENEFINDER00000020524 // cdna:GeneFinder chromosome:SGD1:XIV:254417:255016:1 // ensembl // 11 // --- /// YNL208W // cdna:known chromosome:SGD1:XIV:254417:255016:1 gene:YNL208W // ensembl // 11 // --- --- No cerevisiae_gene -1.36785082827867 1.15773706472328 -1.23230245499262 -1.34820152029063 -1.4092764715478 Max fold change below threshold 4 1.4092764715478 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779515_at YDR532C.S1 Protein of unknown function that localizes to the nuclear side of the spindle pole body and along short spindles; forms a complex with Spc105p 1.40916417189775 242.229454040527 276.242279052734 --- --- 5816 // spindle pole body // inferred from direct assay --- 267.278961181641 294.786926269531 189.671981811523 285.205596923828 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR532C /GEN=APA2 /DB_XREF=GI:6320741 /SEG=NC_001136:-1499384,1500541 /DEF=Protein of unknown function that localizes to the nuclear side of the spindle pole body and along short spindles; forms a complex with Spc105p /NOTE=Ydr532cp; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002940 // YDR532C SGDID:S0002940, Chr IV from 1500543-1499386, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000025514 // cdna:Genscan chromosome:SGD1:IV:1499386:1500543:-1 // ensembl // 10 // --- /// YDR532C // cdna:known chromosome:SGD1:IV:1499386:1500543:-1 gene:YDR532C // ensembl // 10 // --- --- No cerevisiae_gene 1.16047481005508 1.10291855732407 -1.12429351333948 -1.40916417189775 1.06707088228319 Max fold change below threshold 4 1.40916417189775 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771795_at YDL145C.S1 Alpha subunit of COPI vesicle coatomer complex, which surrounds transport vesicles in the early secretory pathway 1.40915555399435 1114.34777832031 1620.42687988281 COP1 6888 // ER to Golgi transport // inferred from mutant phenotype /// 6890 // retrograde transport, Golgi to ER // inferred from mutant phenotype 30126 // COPI vesicle coat // inferred from sequence similarity /// 30126 // COPI vesicle coat // inferred from mutant phenotype --- 1478.87658691406 1049.47717285156 1179.21838378906 1761.97717285156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL145C /GEN=COP1 /DB_XREF=GI:6320056 /SEG=NC_001136:-194572,198177 /DEF=Alpha subunit of COPI vesicle coatomer complex, which surrounds transport vesicles in the early secretory pathway /NOTE=Cop1p; go_component: COPI vesicle coat [goid GO:0030126] [evidence IMP,ISS] [pmid 8001155]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 9427388]; go_process: retrograde transport, Golgi to ER [goid GO:0006890] [evidence IMP] [pmid 8001155] --- --- --- --- --- --- S0002304 // COP1 SGDID:S0002304, Chr IV from 198177-194572, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023890 // cdna:GeneFinder chromosome:SGD1:IV:194572:198054:-1 // ensembl // 11 // --- /// GENSCAN00000024990 // cdna:Genscan chromosome:SGD1:IV:194572:198054:-1 // ensembl // 11 // --- /// YDL145C // cdna:known chromosome:SGD1:IV:194572:198177:-1 gene:YDL145C // ensembl // 11 // --- --- No cerevisiae_gene -1.04541112934055 -1.40915555399435 1.01512667358209 -1.25411595277385 1.19142948670804 Max fold change below threshold 4 1.40915555399435 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778109_at YMR297W.S1 Vacuolar carboxypeptidase Y (proteinase C), involved in protein degradation in the vacuole and required for full protein degradation during sporulation 1.40877192084679 6728.43383789063 6045.92163085938 PRC1 7039 // vacuolar protein catabolism // traceable author statement 324 // vacuole (sensu Fungi) // inferred from direct assay /// 328 // vacuolar lumen (sensu Fungi) // traceable author statement /// 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay 4186 // carboxypeptidase C activity // traceable author statement 6586.6298828125 7672.08203125 5784.78564453125 5505.21337890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR297W /GEN=PRC1 /DB_XREF=GI:6323955 /SEG=NC_001145:+861921,863519 /DEF=Vacuolar carboxypeptidase Y (proteinase C), involved in protein degradation in the vacuole and required for full protein degradation during sporulation /NOTE=Prc1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11914276]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: carboxypeptidase C activity [goid GO:0004186] [evidence TAS] [pmid 8789256]; go_process: vacuolar protein catabolism [goid GO:0007039] [evidence TAS] [pmid 8789256] --- --- --- --- --- --- S0004912 // PRC1 SGDID:S0004912, Chr XIII from 861921-863519, Verified ORF // sgd // 11 // --- /// GENSCAN00000018964 // cdna:Genscan chromosome:SGD1:XIII:861921:863519:1 // ensembl // 11 // --- /// GENEFINDER00000021923 // cdna:GeneFinder chromosome:SGD1:XIII:861921:863519:1 // ensembl // 11 // --- /// YMR297W // cdna:known chromosome:SGD1:XIII:861921:863519:1 gene:YMR297W // ensembl // 11 // --- --- No cerevisiae_gene -1.40877192084679 1.16479628698584 -1.1812619083606 -1.13861261031155 -1.19643498434589 Max fold change below threshold 4 1.40877192084679 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771892_at YDR519W.S1 Membrane-bound peptidyl-prolyl cis-trans isomerase (PPIase), binds to the drugs FK506 and rapamycin; expression pattern suggests possible involvement in ER protein trafficking 1.40804842958127 997.401550292969 1216.50842285156 FPR2 --- 5789 // endoplasmic reticulum membrane // inferred from expression pattern /// 5789 // endoplasmic reticulum membrane // inferred from sequence similarity 3755 // peptidyl-prolyl cis-trans isomerase activity // inferred from sequence similarity 1119.29760742188 794.928344726563 1199.87475585938 1313.71923828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR519W /GEN=FPR2 /DB_XREF=GI:6320727 /SEG=NC_001136:+1480413,1480820 /DEF=Membrane-bound peptidyl-prolyl cis-trans isomerase (PPIase), binds to the drugs FK506 and rapamycin; expression pattern suggests possible involvement in ER protein trafficking /NOTE=Fpr2p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IEP,ISS] [pmid 7685904]; go_function: peptidyl-prolyl cis-trans isomerase activity [goid GO:0003755] [evidence ISS] [pmid 7685904]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002927 // FPR2 SGDID:S0002927, Chr IV from 1480415-1480822, Verified ORF // sgd // 10 // --- /// GENSCAN00000025505 // cdna:Genscan chromosome:SGD1:IV:1480415:1480822:1 // ensembl // 10 // --- /// YDR519W // cdna:known chromosome:SGD1:IV:1480415:1480822:1 gene:YDR519W // ensembl // 10 // --- --- No cerevisiae_gene -1.08491858749875 -1.40804842958127 1.22410000080704 1.07198902946205 1.17369967519827 Max fold change below threshold 4 1.40804842958127 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777198_at YJR030C.S1 Hypothetical protein 1.40789862486337 29.5902004241943 40.6587696075439 --- --- --- --- 40.4044036865234 28.6983757019043 30.4820251464844 40.9131355285645 0.000732421991415322 0.00292969006113708 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR030C /GEN=BNA1 /DB_XREF=GI:6322490 /SEG=NC_001142:-483873,486110 /DEF=Hypothetical ORF /NOTE=Yjr030cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003791 // YJR030C SGDID:S0003791, Chr X from 486110-483873, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024156 // cdna:Genscan chromosome:SGD1:X:483873:486110:-1 // ensembl // 11 // --- /// GENEFINDER00000024332 // cdna:GeneFinder chromosome:SGD1:X:483873:485435:-1 // ensembl // 11 // --- /// YJR030C // cdna:known chromosome:SGD1:X:483873:486110:-1 gene:YJR030C // ensembl // 11 // --- --- No cerevisiae_gene 1.08445470691778 -1.40789862486337 1.01147654991063 -1.32551572582058 1.0125909998818 Max fold change below threshold 4 1.40789862486337 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779900_at YNL088W.S1 Essential type II topoisomerase, relieves torsional strain in DNA by cleaving and re-sealing the phosphodiester backbone of both positively and negatively supercoiled DNA; cleaves complementary strands; localizes to axial cores in meiosis 1.40788286741983 429.533416748047 349.565414428711 TOP2 19 // regulation of mitotic recombination // inferred from mutant phenotype /// 6265 // DNA topological change // inferred from direct assay /// 6271 // DNA strand elongation // inferred from mutant phenotype /// 6333 // chromatin assembly or disassembly // inferred from mutant phenotype /// 7131 // meiotic recombination // inferred from mutant phenotype 795 // synaptonemal complex // inferred from direct assay /// 5634 // nucleus // inferred from direct assay 3918 // DNA topoisomerase (ATP-hydrolyzing) activity // inferred from direct assay 319.595611572266 418.959503173828 440.107330322266 379.535217285156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL088W /GEN=TOP2 /DB_XREF=GI:6324241 /SEG=NC_001146:+457704,461990 /DEF=An essential type II topoisomerase that catalyzes topology changes in DNA via transient breakage and rejoining of phosphodiester bonds in the DNA backbone. /NOTE=Top2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 6088500]; go_component: synaptonemal complex [goid GO:0000795] [evidence IDA] [pmid 1315786]; go_function: DNA topoisomerase (ATP-hydrolyzing) activity [goid GO:0003918] [evidence IDA] [pmid 6088500]; go_process: DNA strand elongation [goid GO:0006271] [evidence IMP] [pmid 2549254]; go_process: DNA topological change [goid GO:0006265] [evidence IDA] [pmid 6088500]; go_process: chromatin assembly/disassembly [goid GO:0006333] [evidence IMP] [pmid 9199287]; go_process: meiotic recombination [goid GO:0007131] [evidence IMP] [pmid 2156624]; go_process: regulation of mitotic recombination [goid GO:0000019] [evidence IMP] [pmid 2902925] --- --- --- --- --- --- S0005032 // TOP2 SGDID:S0005032, Chr XIV from 457704-461990, Verified ORF // sgd // 10 // --- /// GENEFINDER00000020603 // cdna:GeneFinder chromosome:SGD1:XIV:457704:461990:1 // ensembl // 10 // --- /// YNL088W // cdna:known chromosome:SGD1:XIV:457704:461990:1 gene:YNL088W // ensembl // 10 // --- GENSCAN00000019961 // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene -1.20003669146989 1.31090505627639 1.40788286741983 1.37707563679344 1.1875482752032 Max fold change below threshold 4 1.40788286741983 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772268_at YPR091C.S1 Hypothetical protein 1.40778308847166 522.164413452148 472.657958984375 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 443.713226318359 544.753112792969 499.575714111328 501.602691650391 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR091C /GEN=SRP54 /DB_XREF=GI:6325349 /SEG=NC_001148:-716152,718464 /DEF=Hypothetical ORF /NOTE=Ypr091cp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0006295 // span:7-29 // numtm:1 S0006295 // YPR091C SGDID:S0006295, Chr XVI from 718466-716154, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017253 // cdna:Genscan chromosome:SGD1:XVI:716154:718466:-1 // ensembl // 11 // --- /// GENEFINDER00000020878 // cdna:GeneFinder chromosome:SGD1:XVI:716154:718466:-1 // ensembl // 11 // --- /// YPR091C // cdna:known chromosome:SGD1:XVI:716154:718466:-1 gene:YPR091C // ensembl // 11 // --- --- No cerevisiae_gene -1.40778308847166 1.22771438956862 1.15679068089586 1.12589772961351 1.13046594489049 Max fold change below threshold 4 1.40778308847166 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771887_at YMR125W.S1 Large subunit of the nuclear mRNA cap-binding protein complex, interacts with Npl3p to carry poly(A)+ mRNA from the nucleus to the cytoplasm; also involved in mRNA degradation in the nucleus; orthologous to mammalian CBP80 1.407713000542 597.925262451172 630.190795898438 STO1 184 // mRNA catabolism, nonsense-mediated decay // inferred from direct assay /// 184 // mRNA catabolism, nonsense-mediated decay // inferred from physical interaction /// 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 243 // commitment complex // inferred from physical interaction /// 5846 // snRNA cap binding complex // inferred from direct assay 3729 // mRNA binding // inferred from physical interaction 588.735595703125 598.100219726563 597.750305175781 671.64599609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR125W /GEN=STO1 /DB_XREF=GI:6579194 /SEG=NC_001145:+517538,520445 /DEF=Large subunit of the nuclear cap-binding protein complex /NOTE=Sto1p; go_component: commitment complex [goid GO:0000243] [evidence IPI] [pmid 10072386]; go_component: snRNA cap binding complex [goid GO:0005846] [evidence IDA] [pmid 8811086]; go_function: mRNA binding [goid GO:0003729] [evidence IPI] [pmid 10072386]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10072386] --- --- --- --- --- --- S0004732 // STO1 SGDID:S0004732, Chr XIII from 517538-517562,517885-520445, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000018819 // cdna:Genscan chromosome:SGD1:XIII:517869:520445:1 // ensembl // 11 // --- /// GENEFINDER00000022090 // cdna:GeneFinder chromosome:SGD1:XIII:517926:520445:1 // ensembl // 11 // --- /// YMR125W // cdna:known chromosome:SGD1:XIII:517538:520445:1 gene:YMR125W // ensembl // 11 // --- --- No cerevisiae_gene 1.407713000542 1.01590633230228 1.0025423384413 1.01531198306753 1.14082790474322 Max fold change below threshold 4 1.407713000542 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773500_at YOR012W.S1 Hypothetical protein 1.40759194406063 140.459300994873 132.367744445801 --- --- --- --- 140.141708374023 126.624015808105 154.294586181641 124.593780517578 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR012W /GEN=AUS1 /DB_XREF=GI:6324586 /SEG=NC_001147:+356542,356955 /DEF=Hypothetical ORF /NOTE=Yor012wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005538 // YOR012W SGDID:S0005538, Chr XV from 356542-356955, Uncharacterized ORF // sgd // 11 // --- /// YOR012W // cdna:known chromosome:SGD1:XV:356542:356955:1 gene:YOR012W // ensembl // 11 // --- GENEFINDER00000022540 // ensembl // 6 // Cross Hyb Matching Probes /// GENSCAN00000017476 // ensembl // 2 // Cross Hyb Matching Probes /// YOR013W // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene -1.40759194406063 -1.106754571632 -1.013939739856 1.10098976223299 -1.12478895649411 Max fold change below threshold 4 1.40759194406063 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774010_at YGR019W.S1 Gamma-aminobutyrate (GABA) transaminase (4-aminobutyrate aminotransferase) involved in the 4-aminobutyrate and glutamate degradation pathways; required for normal oxidative stress tolerance and nitrogen utilization 1.40743744876568 3942.02905273438 2905.74072265625 UGA1 19740 // nitrogen utilization // traceable author statement 5622 // intracellular // inferred from curator 3867 // 4-aminobutyrate transaminase activity // traceable author statement 2913.01245117188 4099.8828125 3784.17529296875 2898.46899414063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR019W /GEN=UGA1 /DB_XREF=GI:6321456 /SEG=NC_001139:+525231,526646 /DEF=gamma-aminobutyrate (GABA) transaminase (4-aminobutyrate aminotransferase) /NOTE=Uga1p; go_component: intracellular [goid GO:0005622] [evidence IC] [pmid 11031268]; go_function: 4-aminobutyrate transaminase activity [goid GO:0003867] [evidence TAS] [pmid 10590462]; go_process: nitrogen utilization [goid GO:0019740] [evidence TAS] [pmid 2653828] --- --- --- --- --- --- S0003251 // UGA1 SGDID:S0003251, Chr VII from 525233-526648, Verified ORF // sgd // 11 // --- /// GENSCAN00000019355 // cdna:Genscan chromosome:SGD1:VII:525233:526648:1 // ensembl // 11 // --- /// GENEFINDER00000021538 // cdna:GeneFinder chromosome:SGD1:VII:525233:526648:1 // ensembl // 11 // --- /// YGR019W // cdna:known chromosome:SGD1:VII:525233:526648:1 gene:YGR019W // ensembl // 11 // --- --- No cerevisiae_gene 1.11802518652205 1.40743744876568 1.21871051222462 1.29905908622066 -1.00501763415812 Max fold change below threshold 4 1.40743744876568 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775642_at YPR088C.S1 Signal recognition particle (SRP) subunit (homolog of mammalian SRP54); contains the signal sequence-binding activity of SRP, interacts with the SRP RNA, and mediates binding of SRP to signal receptor; contains GTPase domain 1.4073115931233 2157.90930175781 1862.06787109375 SRP54 6617 // SRP-dependent cotranslational protein-membrane targeting, signal sequence recognition // inferred from curator /// 45047 // protein-ER targeting // inferred from physical interaction 5786 // signal recognition particle (sensu Eukaryota) // inferred from direct assay 3924 // GTPase activity // traceable author statement /// 5048 // signal sequence binding // inferred from physical interaction 1842.71984863281 1722.53759765625 2593.28100585938 1881.41589355469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR088C /GEN=SRP54 /DB_XREF=GI:6325345 /SEG=NC_001148:-711399,713024 /DEF=Signal recognition particle subunit (homolog of mammalian SRP54) /NOTE=Srp54p; go_component: signal recognition particle [goid GO:0005786] [evidence IDA] [pmid 7925282]; go_function: signal sequence binding [goid GO:0005048] [evidence IPI] [pmid 7925282]; go_process: protein-ER targeting [goid GO:0045047] [evidence IPI] [pmid 7925282] --- --- --- --- --- --- S0006292 // SRP54 SGDID:S0006292, Chr XVI from 713026-711401, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017251 // cdna:Genscan chromosome:SGD1:XVI:711401:713026:-1 // ensembl // 11 // --- /// GENEFINDER00000020980 // cdna:GeneFinder chromosome:SGD1:XVI:711401:713026:-1 // ensembl // 11 // --- /// YPR088C // cdna:known chromosome:SGD1:XVI:711401:713026:-1 gene:YPR088C // ensembl // 11 // --- YPR087W // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene 1.04160660209978 -1.06977046604967 1.03412625738123 1.4073115931233 1.02099941830582 Max fold change below threshold 4 1.4073115931233 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773106_at YMR077C.S1 Myristoylated subunit of ESCRTIII, the endosomal sorting complex required for transport of transmembrane proteins into the multivesicular body pathway to the lysosomal/vacuolar lumen; cytoplasmic protein recruited to endosomal membranes 1.40729930699092 373.418884277344 416.634963989258 VPS20 43162 // ubiquitin-dependent protein catabolism via the multivesicular body pathway // inferred from curator /// 45324 // late endosome to vacuole transport // inferred from physical interaction /// 45324 // late endosome to vacuole transport // inferred from mutant phenotype 815 // ESCRT III complex // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 400.79345703125 447.186737060547 299.651031494141 432.476470947266 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR077C /GEN=VPS20 /DB_XREF=GI:6323723 /SEG=NC_001145:-421483,422148 /DEF=vaculolar protein sorting (putative) /NOTE=Vps20p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12194857]; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 12194857]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: late endosome to vacuole transport [goid GO:0045324] [evidence IMP,IPI] [pmid 12953057] --- --- --- --- --- --- S0004682 // VPS20 SGDID:S0004682, Chr XIII from 422148-421483, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018775 // cdna:Genscan chromosome:SGD1:XIII:421483:421971:-1 // ensembl // 10 // --- /// GENEFINDER00000021813 // cdna:GeneFinder chromosome:SGD1:XIII:421483:422148:-1 // ensembl // 10 // --- /// YMR077C // cdna:known chromosome:SGD1:XIII:421483:422148:-1 gene:YMR077C // ensembl // 10 // --- --- No cerevisiae_gene -1.40729930699092 1.11575358633083 1.28357155910212 -1.33753404763129 1.07905072640331 Max fold change below threshold 4 1.40729930699092 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774896_at YJR104C.S1 Cu, Zn superoxide dismutase; some mutations are analogous to those that cause ALS (amyotrophic lateral sclerosis) in humans 1.40725366767059 7807.98388671875 6630.76098632813 SOD1 1320 // age-dependent response to reactive oxygen species during chronological cell aging // traceable author statement /// 6801 // superoxide metabolism // inferred from mutant phenotype /// 6878 // copper ion homeostasis // inferred from genetic interaction /// 6882 // zinc ion homeostasis // inferred from genetic interaction /// 6882 // zinc ion homeostasis // inferred from mutant phenotype 5758 // mitochondrial intermembrane space // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 4785 // copper, zinc superoxide dismutase activity // inferred from direct assay 7647.59912109375 9476.7001953125 6139.267578125 5613.9228515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR104C /GEN=SOD1 /DB_XREF=GI:6322564 /SEG=NC_001142:-622463,622927 /DEF=Cu, Zn superoxide dismutase /NOTE=Sod1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 11500508]; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence IDA] [pmid 11500508]; go_function: copper, zinc superoxide dismutase activity [goid GO:0004785] [evidence IDA] [pmid 3290902]; go_process: copper ion homeostasis [goid GO:0006878] [evidence IGI] [pmid 8530401]; go_process: superoxide metabolism [goid GO:0006801] [evidence IMP] [pmid 3290902]; go_process: zinc ion homeostasis [goid GO:0006882] [evidence IGI,IMP] [pmid 11581253] --- --- --- --- --- --- S0003865 // SOD1 SGDID:S0003865, Chr X from 622927-622463, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024214 // cdna:Genscan chromosome:SGD1:X:622463:622927:-1 // ensembl // 11 // --- /// GENEFINDER00000024441 // cdna:GeneFinder chromosome:SGD1:X:622463:622927:-1 // ensembl // 11 // --- /// YJR104C // cdna:known chromosome:SGD1:X:622463:622927:-1 gene:YJR104C // ensembl // 11 // --- --- No cerevisiae_gene -1.40725366767059 1.23917324185752 -1.11860681902166 -1.24568591021234 -1.36225582775246 Max fold change below threshold 4 1.40725366767059 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772073_at YPL196W.S1 Protein of unknown function required for normal levels of resistance to oxidative damage, null mutants are sensitive to hydrogen peroxide; member of a conserved family of proteins found in eukaryotes but not in prokaryotes 1.4072252059763 1050.6396484375 1194.03051757813 OXR1 6979 // response to oxidative stress // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay --- 1129.50256347656 875.77490234375 1225.50439453125 1258.55847167969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL196W /GEN=OXR1 /DB_XREF=GI:6325060 /SEG=NC_001148:+175042,175863 /DEF=Protein of unknown function required for normal levels of resistance to oxidative damage, null mutants are sensitive to hydrogen peroxide; member of a conserved family of proteins found in eukaryotes but not in prokaryotes /NOTE=Oxr1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to oxidative stress [goid GO:0006979] [evidence IMP] [pmid 11114193] --- --- --- --- --- --- S0006117 // OXR1 SGDID:S0006117, Chr XVI from 175042-175863, Verified ORF // sgd // 11 // --- /// GENSCAN00000017037 // cdna:Genscan chromosome:SGD1:XVI:175042:175863:1 // ensembl // 11 // --- /// YPL196W // cdna:known chromosome:SGD1:XVI:175042:175863:1 gene:YPL196W // ensembl // 11 // --- --- No cerevisiae_gene -1.27478221970131 -1.2897178949223 1.4072252059763 1.08499478811203 1.11425906622637 Max fold change below threshold 4 1.4072252059763 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769654_at YFL049W.S1 Hypothetical protein 1.40712375335885 350.016571044922 303.586776733398 --- --- 5634 // nucleus // inferred from direct assay --- 281.986358642578 303.243438720703 396.789703369141 325.187194824219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL049W /GEN=ALR2 /DB_XREF=GI:14318470 /SEG=NC_001138:+36803,38674 /DEF=Hypothetical ORF /NOTE=Yfl049wp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001845 // YFL049W SGDID:S0001845, Chr VI from 36803-38674, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000023200 // cdna:Genscan chromosome:SGD1:VI:36803:38674:1 // ensembl // 11 // --- /// GENEFINDER00000018525 // cdna:GeneFinder chromosome:SGD1:VI:37277:38674:1 // ensembl // 11 // --- /// YFL049W // cdna:known chromosome:SGD1:VI:36803:38674:1 gene:YFL049W // ensembl // 11 // --- --- No cerevisiae_gene -1.37691532357207 1.07538336315435 1.24504041015012 1.40712375335885 1.15320186547179 Max fold change below threshold 4 1.40712375335885 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776810_at YGR101W.S1 Mitochondrial serine protease required for the processing of various mitochondrial proteins and maintenance of mitochondrial DNA and morphology; belongs to the rhomboid-GlpG superfamily of intramembrane peptidases 1.4070902754337 695.017395019531 778.177124023438 PCP1 6465 // signal peptide processing // inferred from mutant phenotype /// 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype /// 45041 // mitochondrial intermembrane space protein import // traceable author statement 5739 // mitochondrion // traceable author statement 8233 // peptidase activity // inferred from sequence similarity /// 8233 // peptidase activity // inferred from mutant phenotype 737.021240234375 545.973022460938 844.061767578125 819.3330078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR101W /GEN=PCP1 /DB_XREF=GI:6321538 /SEG=NC_001139:+693365,694405 /DEF=processing of cytochrome c peroxidase /NOTE=Pcp1p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 12417197]; go_function: peptidase activity [goid GO:0008233] [evidence IMP,ISS] [pmid 12417197]; go_process: mitochondrial intermembrane space protein import [goid GO:0045041] [evidence TAS] [pmid 12417197]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence IMP] [pmid 11907266] --- --- --- --- --- S0003333 // span:107-129,144-163,204-226,246-268,275-297,310-327 // numtm:6 S0003333 // PCP1 SGDID:S0003333, Chr VII from 693367-694407, Verified ORF // sgd // 11 // --- /// YGR101W // cdna:known chromosome:SGD1:VII:693367:694407:1 gene:YGR101W // ensembl // 11 // --- --- No cerevisiae_gene -1.35118553944003 -1.34992245021979 1.4070902754337 1.14523397902306 1.11168167630006 Max fold change below threshold 4 1.4070902754337 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770916_at YBL050W.S1 Peripheral membrane protein required for vesicular transport between ER and Golgi and for the 'priming' step in homotypic vacuole fusion, part of the cis-SNARE complex; has similarity to alpha-SNAP 1.4068446548206 1962.14245605469 1565.47161865234 SEC17 6888 // ER to Golgi transport // inferred from genetic interaction /// 6888 // ER to Golgi transport // traceable author statement /// 6888 // ER to Golgi transport // inferred from mutant phenotype /// 42145 // homotypic vacuole fusion, non-autophagic // inferred from mutant phenotype 300 // peripheral to membrane of membrane fraction // inferred from direct assay 5483 // soluble NSF attachment protein activity // inferred from direct assay 1518.49572753906 1787.99731445313 2136.28759765625 1612.44750976563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL050W /GEN=SEC17 /DB_XREF=GI:6319421 /SEG=NC_001134:+125090,126084 /DEF=peripheral membrane protein required for vesicular transport between ER and Golgisimilar to alpha-SNAP part of cis-SNARE complex required for 'priming' step in homotypic vacuole fusion /NOTE=Sec17p; go_component: peripheral to membrane of membrane fraction [goid GO:0000300] [evidence IDA] [pmid 1601878]; go_function: soluble NSF attachment protein activity [goid GO:0005483] [evidence IDA] [pmid 1601878]; go_process: ER to Golgi transport [goid GO:0006888] [evidence TAS] [pmid 2082939]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IGI,IMP] [pmid 7026045] --- --- --- --- --- --- S0000146 // SEC17 SGDID:S0000146, Chr II from 125128-125157,125274-126122, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022142 // cdna:GeneFinder chromosome:SGD1:II:125128:126122:1 // ensembl // 11 // --- /// GENSCAN00000021099 // cdna:Genscan chromosome:SGD1:II:125307:126122:1 // ensembl // 11 // --- /// YBL050W // cdna:known chromosome:SGD1:II:125128:126122:1 gene:YBL050W // ensembl // 11 // --- --- No cerevisiae_gene 1.12783470612243 1.17747931852981 1.37176708709832 1.4068446548206 1.06187161446863 Max fold change below threshold 4 1.4068446548206 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771383_at YPR107C.S1 Essential RNA-binding component of cleavage and polyadenylation factor, contains five zinc fingers; required for pre-mRNA 3'-end processing and polyadenylation 1.40668218830577 737.300689697266 701.042785644531 YTH1 6378 // mRNA polyadenylylation // inferred from direct assay /// 6378 // mRNA polyadenylylation // traceable author statement /// 6378 // mRNA polyadenylylation // inferred from mutant phenotype /// 6379 // mRNA cleavage // inferred from direct assay /// 6379 // mRNA cleavage // traceable author statement /// 6379 // mRNA cleavage // inferred from mutant phenotype 5847 // mRNA cleavage and polyadenylation specificity factor complex // traceable author statement /// 5847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from physical interaction 3723 // RNA binding // inferred from direct assay 676.663696289063 685.56494140625 789.036437988281 725.421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR107C /GEN=YTH1 /DB_XREF=GI:6325364 /SEG=NC_001148:-741434,742060 /DEF=Essential RNA-binding component of cleavage and polyadenylation factor, contains five zinc fingers; required for pre-mRNA 3'-end processing and polyadenylation /NOTE=Yth1p; go_component: mRNA cleavage and polyadenylation specificity factor complex [goid GO:0005847] [evidence TAS] [pmid 11344258]; go_component: mRNA cleavage and polyadenylation specificity factor complex [goid GO:0005847] [evidence IPI] [pmid 12819204]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 9224719]; go_function: cleavage/polyadenylation specificity factor activity [goid GO:0030364] [evidence TAS] [pmid 11344258]; go_process: mRNA cleavage [goid GO:0006379] [evidence IMP] [pmid 10899131]; go_process: mRNA cleavage [goid GO:0006379] [evidence IDA,TAS] [pmid 11344258]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IMP] [pmid 10899131]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IDA,TAS] [pmid 11344258] --- --- --- --- --- --- S0006311 // YTH1 SGDID:S0006311, Chr XVI from 742062-741436, reverse complement, Verified ORF // sgd // 11 // --- /// YPR107C // cdna:known chromosome:SGD1:XVI:741436:742062:-1 gene:YPR107C // ensembl // 11 // --- --- No cerevisiae_gene 1.40668218830577 1.01315460717932 1.19700394842068 1.16606882017683 1.07205673804925 Max fold change below threshold 4 1.40668218830577 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sc-RIP1-5_at AFFX-r2-Sc-RIP1-5 Ubiquinol-cytochrome-c reductase, a Rieske iron-sulfur protein of the mitochondrial cytochrome bc1 complex; transfers electrons from ubiquinol to cytochrome c1 during respiration 1.40665525552357 3668.2919921875 2676.8154296875 RIP1 6122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from direct assay /// 9060 // aerobic respiration // inferred from mutant phenotype 5750 // respiratory chain complex III (sensu Eukaryota) // inferred from direct assay 8121 // ubiquinol-cytochrome-c reductase activity // inferred from direct assay 2772.35522460938 3899.748046875 3436.8359375 2581.27563476563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=RIP1 SGD:YEL024W Rieske iron-sulfur protein of the mitochondrial cytochrome bc1 complex (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- S0000750 // RIP1 SGDID:S0000750, Chr V from 107260-107907, Verified ORF // sgd // 11 // --- /// GENSCAN00000016783 // cdna:Genscan chromosome:SGD1:V:107260:107907:1 // ensembl // 11 // --- /// YEL024W // cdna:known chromosome:SGD1:V:107260:107907:1 gene:YEL024W // ensembl // 11 // --- GENEFINDER00000019616 // ensembl // 8 // Cross Hyb Matching Probes AFFX_control cerevisiae_gene 1.05421992578618 1.40665525552357 1.13802322684548 1.23968094239592 -1.07402525606728 Max fold change below threshold 4 1.40665525552357 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774908_at YBR140C.S1 GTPase-activating protein that negatively regulates RAS by converting it from the GTP- to the GDP-bound inactive form, required for reducing cAMP levels under nutrient limiting conditions, mediates membrane association of adenylate cyclase 1.40665284821149 784.658325195313 855.771636962891 IRA1 7265 // Ras protein signal transduction // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 16020 // membrane // inferred from mutant phenotype /// 16020 // membrane // inferred from physical interaction 5099 // Ras GTPase activator activity // traceable author statement 846.968139648438 656.953369140625 912.36328125 864.575134277344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR140C /GEN=IRA1 /DB_XREF=GI:6319616 /SEG=NC_001134:-517306,526584 /DEF=GTPase-activating protein that negatively regulates RAS by converting it from the GTP- to the GDP-bound inactive form, required for reducing cAMP levels under nutrient limiting conditions, mediates membrane association of adenylate cyclase /NOTE=Ira1p; go_component: membrane [goid GO:0016020] [evidence IMP,IPI] [pmid 1875942]; go_function: Ras GTPase activator activity [goid GO:0005099] [evidence TAS] [pmid 1875942]; go_process: RAS protein signal transduction [goid GO:0007265] [evidence IMP] [pmid 2540426]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 2540426] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 1.39999997615814 --- S0000344 // IRA1 SGDID:S0000344, Chr II from 526622-517344, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021252 // cdna:Genscan chromosome:SGD1:II:517344:525707:-1 // ensembl // 11 // --- /// GENEFINDER00000022267 // cdna:GeneFinder chromosome:SGD1:II:517344:526097:-1 // ensembl // 11 // --- /// YBR140C // cdna:known chromosome:SGD1:II:517344:526622:-1 gene:YBR140C // ensembl // 11 // --- --- No cerevisiae_gene -1.40665284821149 -1.28923631331151 1.12134173435434 1.07721086371526 1.02078826086211 Max fold change below threshold 4 1.40665284821149 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770923_at YOL055C.S1 Hydroxymethylpyrimidine phosphate kinase, involved in the last steps in thiamine biosynthesis; member of a gene family with THI21 and THI22; functionally redundant with Thi21p 1.40630425392813 340.58512878418 457.336639404297 THI20 9228 // thiamin biosynthesis // inferred from genetic interaction /// 9228 // thiamin biosynthesis // inferred from expression pattern --- 8902 // hydroxymethylpyrimidine kinase activity // inferred from direct assay /// 8902 // hydroxymethylpyrimidine kinase activity // inferred from mutant phenotype /// 8972 // phosphomethylpyrimidine kinase activity // inferred from sequence similarity 408.571899414063 290.52880859375 390.641448974609 506.101379394531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL055C /GEN=THI20 /DB_XREF=GI:6324517 /SEG=NC_001147:-224418,226073 /DEF=THI for thiamine metabolism. Transcribed in the presence of low level of thiamine (10-8M) and turned off in the presence of high level (10-6M) of thiamine. Under the positive control of THI2 and THI3. /NOTE=Thi20p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: phosphomethylpyrimidine kinase activity [goid GO:0008972] [evidence ISS] [pmid 10383756]; go_process: thiamin biosynthesis [goid GO:0009228] [evidence IEP,IGI] [pmid 10383756] --- --- --- --- scop // a.4.5.Restriction endonuclease FokI, N-terminal (recognition) do // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Restriction endonuclease FokI, N-terminal (recognition) domain // 1.79999995231628 --- S0005416 // THI20 SGDID:S0005416, Chr XV from 226073-224418, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017425 // cdna:Genscan chromosome:SGD1:XV:224418:226073:-1 // ensembl // 11 // --- /// GENEFINDER00000022690 // cdna:GeneFinder chromosome:SGD1:XV:224418:226073:-1 // ensembl // 11 // --- /// YOL055C // cdna:known chromosome:SGD1:XV:224418:226073:-1 gene:YOL055C // ensembl // 11 // --- --- No cerevisiae_gene 1.1104403736935 -1.40630425392813 1.14013693072138 -1.04590002030383 1.23870824234446 Max fold change below threshold 4 1.40630425392813 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774671_at YKR046C.S1 Protein of unknown function that co-purifies with lipid particles; expression pattern suggests a role in respiratory growth; computational analysis of large-scale protein-protein interaction data suggests a role in ATP/ADP exchange 1.40555841235591 6815.75854492188 5210.6552734375 PET10 9060 // aerobic respiration // inferred from expression pattern 5811 // lipid particle // inferred from direct assay --- 5807.4453125 8162.70361328125 5468.8134765625 4613.865234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR046C /GEN=PET10 /DB_XREF=GI:6322899 /SEG=NC_001143:-523865,524716 /DEF=Protein of unknown function that co-purifies with lipid particles; expression pattern suggests a role in respiratory growth; computational analysis of large-scale protein-protein interaction data suggests a role in ATP/ADP exchange /NOTE=Pet10p; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 10515935]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: aerobic respiration [goid GO:0009060] [evidence IEP] [pmid 10618406] --- --- --- --- --- --- S0001754 // PET10 SGDID:S0001754, Chr XI from 524716-523865, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018456 // cdna:Genscan chromosome:SGD1:XI:523865:524716:-1 // ensembl // 11 // --- /// GENEFINDER00000022992 // cdna:GeneFinder chromosome:SGD1:XI:523865:524716:-1 // ensembl // 11 // --- /// YKR046C // cdna:known chromosome:SGD1:XI:523865:524716:-1 gene:YKR046C // ensembl // 11 // --- --- No cerevisiae_gene -1.19792517328832 1.40555841235591 -1.14341407552274 -1.06192053127955 -1.25869417884866 Max fold change below threshold 4 1.40555841235591 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779921_at YPL004C.S1 Long chain base-responsive inhibitor of protein kinases Phk1p and Phk2p, acts along with Pil1p to down-regulate heat stress resistance via regulation of the Pkc1p and Ypk1p pathways; phosphorylated by Phk1p and Phk2p 1.40551169376135 6382.99072265625 6541.8359375 LSP1 9408 // response to heat // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4860 // protein kinase inhibitor activity // inferred from mutant phenotype 7488.517578125 7087.4091796875 5678.572265625 5595.154296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL004C /GEN=LSP1 /DB_XREF=GI:6325253 /SEG=NC_001148:-550627,551652 /DEF=Long chain base Stimulates Phosphorylation /NOTE=Lsp1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14576278]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005925 // LSP1 SGDID:S0005925, Chr XVI from 551654-550629, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017181 // cdna:Genscan chromosome:SGD1:XVI:550629:551654:-1 // ensembl // 11 // --- /// GENEFINDER00000020764 // cdna:GeneFinder chromosome:SGD1:XVI:550629:551654:-1 // ensembl // 11 // --- /// YPL004C // cdna:known chromosome:SGD1:XVI:550629:551654:-1 gene:YPL004C // ensembl // 11 // --- --- No cerevisiae_gene -1.40551169376135 -1.05659450276796 -1.12712132406413 -1.31873246087867 -1.33839339914316 Max fold change below threshold 4 1.40551169376135 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773345_at YDR032C.S1 Protein of unknown function with similarity to members of a family of flavodoxin-like proteins; induced by oxidative stress in a Yap1p dependent manner; GFP-fusion protein localizes to the cytoplasm in a punctate pattern 1.40539925619004 4509.87377929688 5055.12719726563 PST2 --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 5531.560546875 4716.28173828125 4303.4658203125 4578.69384765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR032C /GEN=PST2 /DB_XREF=GI:6320235 /SEG=NC_001136:-504094,504690 /DEF=Protoplasts-SecreTed protein; the gene product was detected among the proteins secreted by regenerating protoplasts /NOTE=Pst2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002439 // PST2 SGDID:S0002439, Chr IV from 504691-504095, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023513 // cdna:GeneFinder chromosome:SGD1:IV:504095:504691:-1 // ensembl // 11 // --- /// GENSCAN00000025119 // cdna:Genscan chromosome:SGD1:IV:504095:504691:-1 // ensembl // 11 // --- /// YDR032C // cdna:known chromosome:SGD1:IV:504095:504691:-1 gene:YDR032C // ensembl // 11 // --- --- No cerevisiae_gene -1.40539925619004 -1.17286473833322 -1.19106937368808 -1.28537341246347 -1.20810884739684 Max fold change below threshold 4 1.40539925619004 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775345_at YPR072W.S1 Subunit of the CCR4-NOT complex, which is a global transcriptional regulator with roles in transcription initiation and elongation and in mRNA degradation 1.4053782174661 1280.95648193359 1116.03692626953 NOT5 289 // poly(A) tail shortening // inferred from direct assay /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay /// 30015 // CCR4-NOT core complex // inferred from physical interaction 175 // 3'-5'-exoribonuclease activity // inferred from direct assay 1027.57348632813 1226.23974609375 1335.67321777344 1204.50036621094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR072W /GEN=NOT5 /DB_XREF=GI:6325329 /SEG=NC_001148:+690102,691784 /DEF=Subunit of the CCR4-NOT complex, which is a global transcriptional regulator with roles in transcription initiation and elongation and in mRNA degradation /NOTE=Not5p; go_component: CCR4-NOT core complex [goid GO:0030015] [evidence IPI] [pmid 10490603]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11889048]; go_function: 3'-5'-exoribonuclease activity [goid GO:0000175] [evidence IDA] [pmid 11889048]; go_process: poly(A) tail shortening [goid GO:0000289] [evidence IDA] [pmid 11889048]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IPI] [pmid 10490603] --- --- --- --- scop // a.2.7.Seryl-tRNA synthetase (SerRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) // 0.119999997317791 --- S0006276 // NOT5 SGDID:S0006276, Chr XVI from 690104-691786, Verified ORF // sgd // 11 // --- /// GENSCAN00000017240 // cdna:Genscan chromosome:SGD1:XVI:690104:691786:1 // ensembl // 11 // --- /// GENEFINDER00000020944 // cdna:GeneFinder chromosome:SGD1:XVI:690104:691786:1 // ensembl // 11 // --- /// YPR072W // cdna:known chromosome:SGD1:XVI:690104:691786:1 gene:YPR072W // ensembl // 11 // --- U11057 // gb // 1 // Negative Strand Matching Probes No cerevisiae_gene 1.4053782174661 1.19333533066869 1.04779266328514 1.29983230936238 1.17217929640734 Max fold change below threshold 4 1.4053782174661 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769796_at YHR124W.S1 Meiosis-specific transcription factor required for exit from pachytene and for full meiotic recombination; activates middle sporulation genes; competes with Sum1p for binding to promoters containing middle sporulation elements (MSE) 1.40530895148434 150.773696899414 153.590995788574 NDT80 6350 // transcription // inferred from genetic interaction /// 6350 // transcription // inferred from mutant phenotype /// 6350 // transcription // inferred from physical interaction /// 6350 // transcription // traceable author statement /// 7126 // meiosis // inferred from mutant phenotype /// 7126 // meiosis // inferred from expression pattern /// 7126 // meiosis // inferred from genetic interaction 228 // nuclear chromosome // inferred from direct assay 3700 // transcription factor activity // inferred from physical interaction /// 3700 // transcription factor activity // inferred from mutant phenotype /// 3700 // transcription factor activity // inferred from direct assay 140.269790649414 148.430603027344 153.116790771484 166.912200927734 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR124W /GEN=NDT80 /DB_XREF=GI:6321916 /SEG=NC_001140:+356563,358446 /DEF=Meiosis-specific gene; mRNA is sporulation specific; required for exit from pachytene and for full meiotic recombination /NOTE=Ndt80p; go_component: nuclear chromosome [goid GO:0000228] [evidence IDA] [pmid 11035815]; go_function: transcription factor activity [goid GO:0003700] [evidence IDA,IMP,IPI] [pmid 9660952]; go_process: meiosis [goid GO:0007126] [evidence IMP] [pmid 8524222]; go_process: meiosis [goid GO:0007126] [evidence IEP,IGI] [pmid 9660952]; go_process: transcription [goid GO:0006350] [evidence IGI,IMP,IPI,TAS] [pmid 9660952] --- --- --- --- --- --- S0001166 // NDT80 SGDID:S0001166, Chr VIII from 356563-358446, Verified ORF // sgd // 11 // --- /// GENSCAN00000016660 // cdna:Genscan chromosome:SGD1:VIII:356563:358446:1 // ensembl // 11 // --- /// YHR124W // cdna:known chromosome:SGD1:VIII:356563:358446:1 gene:YHR124W // ensembl // 11 // --- --- No cerevisiae_gene -1.40530895148434 1.05817940085422 1.28245586915996 1.09158778994816 1.18993690769033 Max fold change below threshold 4 1.40530895148434 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774264_at YGL054C.S1 Protein localized to COPII-coated vesicles, involved in vesicle formation and incorporation of specific secretory cargo; required for the delivery of bud-site selection protein Axl2p to cell surface; related to Drosophila cornichon 1.40514139550834 1519.83361816406 1240.89544677734 ERV14 6888 // ER to Golgi transport // inferred from mutant phenotype /// 6888 // ER to Golgi transport // inferred from physical interaction /// 7120 // axial bud site selection // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype 5789 // endoplasmic reticulum membrane // inferred from direct assay /// 30138 // COPII-coated vesicle // inferred from direct assay --- 1232.36657714844 1547.19287109375 1492.47436523438 1249.42431640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL054C /GEN=ERV14 /DB_XREF=GI:6321384 /SEG=NC_001139:-400872,401288 /DEF=Protein localized to COPII-coated vesicles, involved in vesicle formation and incorporation of specific secretory cargo; required for the delivery of bud-site selection protein Axl2p to cell surface; related to Drosophila cornichon /NOTE=Erv14p; go_component: COPII-coated vesicle [goid GO:0030138] [evidence IDA] [pmid 11157978]; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 9732282]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IPI] [pmid 11157978]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 9732282]; go_process: axial budding [goid GO:0007120] [evidence IMP] [pmid 9732282]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 9732282] --- --- --- --- --- S0003022 // span:5-27,56-78,109-131 // numtm:3 S0003022 // ERV14 SGDID:S0003022, Chr VII from 401290-400874, reverse complement, Verified ORF // sgd // 11 // --- /// YGL054C // cdna:known chromosome:SGD1:VII:400874:401290:-1 gene:YGL054C // ensembl // 11 // --- --- No cerevisiae_gene 1.40514139550834 1.2554648103763 1.1969344504067 1.21106365014199 1.01384144910622 Max fold change below threshold 4 1.40514139550834 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771667_at SPAC823.03.S1 --- 1.40506123667021 --- --- --- --- 11.5813722610474 14.22509765625 14.4927625656128 9.88596534729004 0.149657994508743 0.018554700538516 0.00195312988944352 0.0107421996071935 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC823.03 /DEF=serinethreonine protein kinase (predicted) --- --- --- --- --- --- SPAC823.03 // |||serine/threonine protein kinase |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.13118154564055 1.22827393296859 1.40506123667021 1.25138560776235 -1.17149634397839 Max fold change below threshold 4 1.40506123667021 Max fold change below threshold AAPPPP No 3 0 APPP 1 3 0 No No 2 < x = 3
1770700_at YPL258C.S1 Hydroxymethylpyrimidine phosphate kinase, involved in the last steps in thiamine biosynthesis; member of a gene family with THI20 and THI22; functionally redundant with Thi20p 1.4049256175666 641.560363769531 711.546264648438 THI21 9228 // thiamin biosynthesis // inferred from genetic interaction /// 9228 // thiamin biosynthesis // inferred from expression pattern --- 8902 // hydroxymethylpyrimidine kinase activity // inferred from direct assay /// 8902 // hydroxymethylpyrimidine kinase activity // inferred from mutant phenotype /// 8972 // phosphomethylpyrimidine kinase activity // inferred from sequence similarity 695.661499023438 675.331237792969 607.789489746094 727.431030273438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL258C /GEN=THI21 /DB_XREF=GI:6324997 /SEG=NC_001148:-53498,55153 /DEF=THI for thiamine metabolism. Transcribed in the presence of low level of thiamine (10-8M) and turned off in the presence of high level (10-6M) of thiamine. Under the positive control of THI2 and THI3. /NOTE=Thi21p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: phosphomethylpyrimidine kinase activity [goid GO:0008972] [evidence ISS] [pmid 10383756]; go_process: thiamin biosynthesis [goid GO:0009228] [evidence IEP,IGI] [pmid 10383756] --- --- --- --- --- --- S0006179 // THI21 SGDID:S0006179, Chr XVI from 55153-53498, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016986 // cdna:Genscan chromosome:SGD1:XVI:53498:55153:-1 // ensembl // 11 // --- /// GENEFINDER00000020885 // cdna:GeneFinder chromosome:SGD1:XVI:53498:55153:-1 // ensembl // 11 // --- /// YPL258C // cdna:known chromosome:SGD1:XVI:53498:55153:-1 gene:YPL258C // ensembl // 11 // --- --- No cerevisiae_gene 1.15733623169129 -1.03010413274663 1.4049256175666 -1.14457638830519 1.04566808899817 Max fold change below threshold 4 1.4049256175666 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772025_at YOR151C.S1 RNA polymerase II second largest subunit B150, part of central core; similar to bacterial beta subunit 1.40461190157629 2226.67028808594 1574.56439208984 RPB2 6366 // transcription from RNA polymerase II promoter // traceable author statement 5665 // DNA-directed RNA polymerase II, core complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 1594.53381347656 2239.701171875 2213.63940429688 1554.59497070313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR151C /GEN=RPB2 /DB_XREF=GI:6324725 /SEG=NC_001147:-612997,616671 /DEF=RNA polymerase II core subunit /NOTE=Rpb2p; go_component: DNA-directed RNA polymerase II, core complex [goid GO:0005665] [evidence TAS] [pmid 9774381]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 9774381]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence TAS] --- --- --- --- --- --- S0005677 // RPB2 SGDID:S0005677, Chr XV from 616671-612997, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017575 // cdna:Genscan chromosome:SGD1:XV:612997:616671:-1 // ensembl // 11 // --- /// GENEFINDER00000022636 // cdna:GeneFinder chromosome:SGD1:XV:612997:616671:-1 // ensembl // 11 // --- /// YOR151C // cdna:known chromosome:SGD1:XV:612997:616671:-1 gene:YOR151C // ensembl // 11 // --- --- No cerevisiae_gene 1.14307263561632 1.40461190157629 1.22098529820774 1.38826745822999 -1.02569083492877 Max fold change below threshold 4 1.40461190157629 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778654_at YPL111W.S1 Arginase, responsible for arginine degradation, expression responds to both induction by arginine and nitrogen catabolite repression; disruption enhances freeze tolerance 1.40450982869171 6493.1982421875 6744.01831054688 CAR1 19547 // arginine catabolism to ornithine // traceable author statement 5829 // cytosol // traceable author statement 4053 // arginase activity // traceable author statement 7665.3291015625 7528.7421875 5457.654296875 5822.70751953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL111W /GEN=CAR1 /DB_XREF=GI:6325146 /SEG=NC_001148:+339943,340944 /DEF=arginase /NOTE=Car1p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: arginase activity [goid GO:0004053] [evidence TAS] [pmid 8816501]; go_process: arginine catabolism to ornithine [goid GO:0019547] [evidence TAS] [pmid 10640599] --- --- --- --- --- --- S0006032 // CAR1 SGDID:S0006032, Chr XVI from 339943-340944, Verified ORF // sgd // 11 // --- /// GENSCAN00000017104 // cdna:Genscan chromosome:SGD1:XVI:339943:340944:1 // ensembl // 11 // --- /// GENEFINDER00000021010 // cdna:GeneFinder chromosome:SGD1:XVI:339943:340944:1 // ensembl // 11 // --- /// YPL111W // cdna:known chromosome:SGD1:XVI:339943:340944:1 gene:YPL111W // ensembl // 11 // --- --- No cerevisiae_gene -1.09003487660221 -1.01814206286533 -1.3268846598142 -1.40450982869171 -1.31645442877742 Max fold change below threshold 4 1.40450982869171 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769908_at YLR262C.S1 Ras-like GTP binding protein involved in the secretory pathway, required for fusion of endosome-derived vesicles with the late Golgi; has similarity to the human GTPase, Rab6 1.40437064020521 640.509857177734 657.406494140625 YPT6 6886 // intracellular protein transport // inferred from genetic interaction /// 6886 // intracellular protein transport // traceable author statement /// 42147 // retrograde transport, endosome to Golgi // inferred from mutant phenotype /// 42147 // retrograde transport, endosome to Golgi // traceable author statement 5794 // Golgi apparatus // traceable author statement 3924 // GTPase activity // inferred from sequence similarity /// 3924 // GTPase activity // traceable author statement 606.67041015625 570.26708984375 710.752624511719 708.142578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR262C /GEN=YPT6 /DB_XREF=GI:6323291 /SEG=NC_001144:-668246,668893 /DEF=Ras-like GTP binding protein involved in the secretory pathway. Ypt6p is required for fusion of endosome-derived vesicles with the late Golgi. /NOTE=Ypt6p; go_component: Golgi apparatus [goid GO:0005794] [evidence TAS] [pmid 11689439]; go_function: GTPase activity [goid GO:0003924] [evidence ISS,TAS] [pmid 9433126]; go_process: intracellular protein transport [goid GO:0006886] [evidence IGI,TAS] [pmid 10990452]; go_process: retrograde transport, endosome to Golgi [goid GO:0042147] [evidence IMP,TAS] [pmid 11160819] --- --- --- --- --- --- S0004252 // YPT6 SGDID:S0004252, Chr XII from 668893-668246, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018024 // cdna:Genscan chromosome:SGD1:XII:668246:668893:-1 // ensembl // 11 // --- /// GENEFINDER00000024610 // cdna:GeneFinder chromosome:SGD1:XII:668246:668893:-1 // ensembl // 11 // --- /// YLR262C // cdna:known chromosome:SGD1:XII:668246:668893:-1 gene:YLR262C // ensembl // 11 // --- YLR261C // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene 1.40437064020521 -1.06383556224939 1.31669495058597 1.17156303095228 1.16726078323585 Max fold change below threshold 4 1.40437064020521 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777842_at YIL007C.S1 Protein with similarity to the p27 subunit of mammalian proteasome modulator; not essential; interacts with Rpn4p 1.40408247352191 1746.26678466797 1558.88928222656 NAS2 6511 // ubiquitin-dependent protein catabolism // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay --- 1544.138671875 1628.44836425781 1864.08520507813 1573.63989257813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL007C /GEN=NAS2 /DB_XREF=GI:6322184 /SEG=NC_001141:-342991,343653 /DEF=Protein with similarity to the p27 subunit of mammalian proteasome modulator /NOTE=Nas2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11489916]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence ISS] [pmid 10419517] --- --- --- --- --- --- S0001269 // NAS2 SGDID:S0001269, Chr IX from 343653-342991, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016470 // cdna:Genscan chromosome:SGD1:IX:342991:343653:-1 // ensembl // 11 // --- /// GENEFINDER00000019135 // cdna:GeneFinder chromosome:SGD1:IX:342991:343653:-1 // ensembl // 11 // --- /// YIL007C // cdna:known chromosome:SGD1:IX:342991:343653:-1 gene:YIL007C // ensembl // 11 // --- --- No cerevisiae_gene -1.40408247352191 1.05459981925097 1.1271420467266 1.2072006478632 1.01910529231633 Max fold change below threshold 4 1.40408247352191 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770888_at YKL039W.S1 Protein of unknown function 1.40375121566782 1802.56079101563 2412.30383300781 PTM1 --- --- --- 2423.04321289063 1726.1201171875 1879.00146484375 2401.564453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL039W /GEN=PTM1 /DB_XREF=GI:6322812 /SEG=NC_001143:+362266,363861 /DEF=Putative membrane protein /NOTE=Ptm1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001522 // span:196-218,230-249,264-286,307-325,335-354,381-403,418-440 // numtm:7 S0001522 // PTM1 SGDID:S0001522, Chr XI from 362266-363861, Verified ORF // sgd // 11 // --- /// GENSCAN00000018389 // cdna:Genscan chromosome:SGD1:XI:362266:363861:1 // ensembl // 11 // --- /// GENEFINDER00000023074 // cdna:GeneFinder chromosome:SGD1:XI:362389:363861:1 // ensembl // 11 // --- /// YKL039W // cdna:known chromosome:SGD1:XI:362266:363861:1 gene:YKL039W // ensembl // 11 // --- --- No cerevisiae_gene -1.17030203172371 -1.40375121566782 -1.13075863414158 -1.28953769234667 -1.00894365326638 Max fold change below threshold 4 1.40375121566782 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771920_at YMR116C.S1 WD repeat protein (G-beta like protein) involved in translation regulation; required for repression of Gcn4p activity in the absence of amino-acid starvation; core component of the ribosome; ortholog of mammalian RACK1 1.4035908936339 5466.8427734375 6070.52221679688 ASC1 --- 5737 // cytoplasm // inferred from direct assay --- 6963.22607421875 5972.67724609375 4961.00830078125 5177.818359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR116C /GEN=ASC1 /DB_XREF=GI:6323763 /SEG=NC_001145:-499455,500687 /DEF=WD repeat protein (G-beta like protein) that interacts with the translational machinery /NOTE=Asc1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004722 // ASC1 SGDID:S0004722, Chr XIII from 500687-500151,499877-499455, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021847 // cdna:GeneFinder chromosome:SGD1:XIII:499455:500687:-1 // ensembl // 11 // --- /// YMR116C // cdna:known chromosome:SGD1:XIII:499455:500687:-1 gene:YMR116C // ensembl // 11 // --- GENSCAN00000018810 // ensembl // 6 // Cross Hyb Matching Probes /// GENSCAN00000018811 // ensembl // 3 // Cross Hyb Matching Probes No cerevisiae_gene -1.13354090069237 -1.16584670279527 -1.33707273747204 -1.4035908936339 -1.34481852991445 Max fold change below threshold 4 1.4035908936339 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775015_at YEL032W.S1 Protein involved in DNA replication; component of the Mcm2-7 hexameric complex that binds chromatin as a part of the pre-replicative complex 1.40351015292918 1031.96856689453 1238.26788330078 MCM3 6267 // pre-replicative complex formation and maintenance // inferred from physical interaction /// 6268 // DNA unwinding // traceable author statement /// 6270 // DNA replication initiation // traceable author statement 5634 // nucleus // inferred from direct assay /// 5656 // pre-replicative complex // inferred from direct assay /// 5737 // cytoplasm // traceable author statement /// 5737 // cytoplasm // inferred from direct assay /// 42555 // MCM complex // inferred from direct assay 3682 // chromatin binding // traceable author statement /// 4003 // ATP-dependent DNA helicase activity // traceable author statement 1236.248046875 988.205810546875 1075.73132324219 1240.28771972656 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL032W /GEN=MCM3 /DB_XREF=GI:6320803 /SEG=NC_001137:+86937,89852 /DEF=Member of complex that acts at ARS's to initiate replication /NOTE=Mcm3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 9442876]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10704410]; go_component: pre-replicative complex [goid GO:0005656] [evidence IDA] [pmid 9335335]; go_function: ATP-dependent DNA helicase activity [goid GO:0004003] [evidence TAS] [pmid 9914182]; go_function: chromatin binding [goid GO:0003682] [evidence TAS] [pmid 9442876]; go_process: DNA replication initiation [goid GO:0006270] [evidence TAS] [pmid 9442876]; go_process: DNA unwinding [goid GO:0006268] [evidence TAS] [pmid 9914182]; go_process: pre-replicative complex formation and maintenance [goid GO:0006267] [evidence IPI] [pmid 9335335] --- --- --- --- --- --- S0000758 // MCM3 SGDID:S0000758, Chr V from 86937-89852, Verified ORF // sgd // 11 // --- /// GENSCAN00000016776 // cdna:Genscan chromosome:SGD1:V:86937:89852:1 // ensembl // 11 // --- /// GENEFINDER00000019625 // cdna:GeneFinder chromosome:SGD1:V:86937:89852:1 // ensembl // 11 // --- /// YEL032W // cdna:known chromosome:SGD1:V:86937:89852:1 gene:YEL032W // ensembl // 11 // --- --- No cerevisiae_gene 1.08777266773993 -1.25100260864775 -1.40351015292918 -1.14921637044929 1.00326768795451 Max fold change below threshold 4 1.40351015292918 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774180_at YBL026W.S1 Component of small nuclear ribonucleoprotein complexes involved in RNA processing, splicing, and decay 1.40338130085345 1830.80041503906 1513.93786621094 LSM2 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction /// 398 // nuclear mRNA splicing, via spliceosome // traceable author statement /// 6364 // rRNA processing // inferred from mutant phenotype /// 6402 // mRNA catabolism // traceable author statement 5688 // snRNP U6 // traceable author statement /// 5730 // nucleolus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 3723 // RNA binding // traceable author statement 1413.615234375 1983.84118652344 1677.75964355469 1614.26049804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL026W /GEN=LSM2 /DB_XREF=GI:6319445 /SEG=NC_001134:+170588,171003 /DEF=Like Sm-D1 protein /NOTE=Lsm2p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence IDA] [pmid 10377396]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10377396]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 12438310] --- --- --- --- --- --- S0000122 // LSM2 SGDID:S0000122, Chr II from 170626-170679,170808-171041, intron sequence removed, Verified ORF // sgd // 11 // --- /// YBL026W // cdna:known chromosome:SGD1:II:170626:171041:1 gene:YBL026W // ensembl // 11 // --- --- No cerevisiae_gene 1.16843785879788 1.40338130085345 1.19317721005677 1.18685735888838 1.1419376778014 Max fold change below threshold 4 1.40338130085345 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779717_at YCR035C.S1 Protein involved in rRNA processing; component of the exosome 3->5 exonuclease complex with Rrp41p, Rrp42p, Rrp4p and Dis3p; required for efficient maturation of 5.8S, 18S and 25S rRNA 1.40317533066546 661.977966308594 957.437927246094 RRP43 6365 // 35S primary transcript processing // traceable author statement /// 6402 // mRNA catabolism // inferred from physical interaction 176 // nuclear exosome (RNase complex) // inferred from direct assay /// 177 // cytoplasmic exosome (RNase complex) // inferred from direct assay 175 // 3'-5'-exoribonuclease activity // traceable author statement 923.478210449219 665.821350097656 658.134582519531 991.397644042969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR035C /GEN=RRP43 /DB_XREF=GI:10383796 /SEG=NC_001135:-191829,193013 /DEF=Ribosomal RNA Processing /NOTE=Rrp43p; go_component: cytoplasmic exosome (RNase complex) [goid GO:0000177] [evidence IDA] [pmid 10465791]; go_component: nuclear exosome (RNase complex) [goid GO:0000176] [evidence IDA] [pmid 10465791]; go_function: 3'-5'-exoribonuclease activity [goid GO:0000175] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: mRNA catabolism [goid GO:0006402] [evidence IPI] [pmid 10465791] --- --- --- --- --- --- S0000631 // RRP43 SGDID:S0000631, Chr III from 193013-191829, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022484 // cdna:Genscan chromosome:SGD1:III:191829:193013:-1 // ensembl // 11 // --- /// GENEFINDER00000023305 // cdna:GeneFinder chromosome:SGD1:III:191829:193013:-1 // ensembl // 11 // --- /// YCR035C // cdna:known chromosome:SGD1:III:191829:193013:-1 gene:YCR035C // ensembl // 11 // --- --- No cerevisiae_gene 1.10860237958788 -1.38697596632155 1.00450051542382 -1.40317533066546 1.07354741327433 Max fold change below threshold 4 1.40317533066546 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774469_at YDR089W.S1 Hypothetical protein 1.40312159608196 809.595825195313 654.910949707031 --- 16044 // membrane organization and biogenesis // inferred from sequence similarity 16020 // membrane // inferred from sequence similarity --- 633.463439941406 797.1953125 821.996337890625 676.358459472656 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR089W /GEN=SLU7 /DB_XREF=GI:6320294 /SEG=NC_001136:+622106,624715 /DEF=Hypothetical ORF /NOTE=Ydr089wp; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 10480897]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: membrane organization and biogenesis [goid GO:0016044] [evidence ISS] [pmid 10480897] --- --- --- --- --- S0002496 // span:776-798,811-833,843-865 // numtm:3 S0002496 // YDR089W SGDID:S0002496, Chr IV from 622107-624716, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025162 // cdna:Genscan chromosome:SGD1:IV:622107:624716:1 // ensembl // 11 // --- /// GENEFINDER00000023631 // cdna:GeneFinder chromosome:SGD1:IV:622239:624716:1 // ensembl // 11 // --- /// YDR089W // cdna:known chromosome:SGD1:IV:622107:624716:1 gene:YDR089W // ensembl // 11 // --- --- No cerevisiae_gene 1.40312159608196 1.25847091123955 -1.01448346765727 1.29762238206937 1.06771506740029 Max fold change below threshold 4 1.40312159608196 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sc-TDH1-5_at AFFX-r2-Sc-TDH1-5 Glyceraldehyde-3-phosphate dehydrogenase, isozyme 1, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall 1.40306217371147 6986.86865234375 5323.46044921875 TDH1 6094 // gluconeogenesis // inferred from expression pattern /// 6096 // glycolysis // inferred from expression pattern 5737 // cytoplasm // inferred from direct assay /// 5811 // lipid particle // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay 4365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // inferred from direct assay 6012.72607421875 8436.228515625 5537.5087890625 4634.19482421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=TDH1 SGD:YJL052W Glyceraldehyde-3-phosphate dehydrogenase 1 (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- S0003588 // TDH1 SGDID:S0003588, Chr X from 338187-339185, Verified ORF // sgd // 11 // --- /// GENSCAN00000024101 // cdna:Genscan chromosome:SGD1:X:338187:339185:1 // ensembl // 11 // --- /// GENEFINDER00000024436 // cdna:GeneFinder chromosome:SGD1:X:338187:339185:1 // ensembl // 11 // --- /// YJL052W // cdna:known chromosome:SGD1:X:338187:339185:1 gene:YJL052W // ensembl // 11 // --- --- AFFX_control cerevisiae_gene -1.25245798962705 1.40306217371147 -1.1193339915015 -1.08581788368352 -1.29746942074935 Max fold change below threshold 4 1.40306217371147 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777215_at YGR054W.S1 yeast homolog of mammalian eIF2A 1.40288882562038 541.826202392578 735.45703125 --- 6413 // translational initiation // inferred from direct assay /// 6413 // translational initiation // inferred from mutant phenotype 5830 // cytosolic ribosome (sensu Eukaryota) // inferred from direct assay /// 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // inferred from direct assay 3743 // translation initiation factor activity // inferred from mutant phenotype /// 3743 // translation initiation factor activity // inferred from direct assay 674.647155761719 540.041870117188 543.610534667969 796.266906738281 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR054W /GEN=SCM4 /DB_XREF=GI:6321491 /SEG=NC_001139:+596695,598623 /DEF=yeast homolog of mammalian eIF2A /NOTE=Ygr054wp; go_component: cytosolic ribosome (sensu Eukarya) [goid GO:0005830] [evidence IDA] [pmid 12133843]; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence IDA] [pmid 12133843]; go_function: translation initiation factor activity [goid GO:0003743] [evidence IDA,IMP] [pmid 12133843]; go_process: translational initiation [goid GO:0006413] [evidence IDA,IMP] [pmid 12133843] --- --- --- --- --- --- S0003286 // YGR054W SGDID:S0003286, Chr VII from 596697-598625, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019383 // cdna:Genscan chromosome:SGD1:VII:596901:598625:1 // ensembl // 11 // --- /// GENEFINDER00000021507 // cdna:GeneFinder chromosome:SGD1:VII:596901:598625:1 // ensembl // 11 // --- /// YGR054W // cdna:known chromosome:SGD1:VII:596697:598625:1 gene:YGR054W // ensembl // 11 // --- --- No cerevisiae_gene 1.40288882562038 -1.24924972135091 -1.11538685090185 -1.24104871546278 1.1802716426474 Max fold change below threshold 4 1.40288882562038 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773234_at YER079W.S1 Hypothetical protein 1.40268293902973 3370.89184570313 2645.24230957031 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 2738.05883789063 3840.62841796875 2901.1552734375 2552.42578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER079W /GEN=PTP3 /DB_XREF=GI:6320923 /SEG=NC_001137:+318916,319548 /DEF=Hypothetical ORF /NOTE=Yer079wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000881 // YER079W SGDID:S0000881, Chr V from 318916-319548, Uncharacterized ORF // sgd // 11 // --- /// YER079W // cdna:known chromosome:SGD1:V:318916:319548:1 gene:YER079W // ensembl // 11 // --- --- No cerevisiae_gene -1.10549993435068 1.40268293902973 -1.17730800137938 1.05956644659708 -1.07272809184278 Max fold change below threshold 4 1.40268293902973 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772475_at YDL093W.S1 Protein O-mannosyltransferase, transfers mannose residues from dolichyl phosphate-D-mannose to protein serine/threonine residues; acts in a complex with Pmt3p, can instead interact with Pmt2p in some conditions; target for new antifungals 1.40233307935641 204.348129272461 244.492851257324 PMT5 6493 // O-linked glycosylation // traceable author statement 5783 // endoplasmic reticulum // traceable author statement 4169 // dolichyl-phosphate-mannose-protein mannosyltransferase activity // traceable author statement 225.26008605957 160.632369995117 248.063888549805 263.725616455078 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL093W /GEN=PMT5 /DB_XREF=GI:6320109 /SEG=NC_001136:+289909,292140 /DEF=Transfers mannose residues from dolichyl phosphate-D-mannose to specific serine/threonine residues of proteins in the secretory pathway /NOTE=Pmt5p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS] [pmid 8918452]; go_function: dolichyl-phosphate-mannose-protein mannosyltransferase activity [goid GO:0004169] [evidence TAS] [pmid 8918452]; go_process: O-linked glycosylation [goid GO:0006493] [evidence TAS] [pmid 8918452] --- --- --- --- --- S0002251 // span:47-64,93-115,128-150,154-176,181-199,231-253,265-287,585-607,620-642,652-674,681-698 // numtm:11 S0002251 // PMT5 SGDID:S0002251, Chr IV from 289909-292140, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023528 // cdna:GeneFinder chromosome:SGD1:IV:289909:292140:1 // ensembl // 11 // --- /// GENSCAN00000025030 // cdna:Genscan chromosome:SGD1:IV:289909:292140:1 // ensembl // 11 // --- /// YDL093W // cdna:known chromosome:SGD1:IV:289909:292140:1 gene:YDL093W // ensembl // 11 // --- --- No cerevisiae_gene 1.09312626565226 -1.40233307935641 1.23531345500755 1.10123321396674 1.17076052428274 Max fold change below threshold 4 1.40233307935641 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775828_at YGL150C.S1 ATPase that forms a large complex, containing actin and several actin-related proteins, that has chromatin remodeling activity and 3' to 5' DNA helicase activity in vitro; shows similarity to the Snf2p family of ATPases 1.40229136608085 814.368530273438 945.876647949219 INO80 6281 // DNA repair // inferred from direct assay /// 6281 // DNA repair // inferred from mutant phenotype /// 6338 // chromatin remodeling // inferred from direct assay /// 6366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 6366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype 31011 // INO80 complex // inferred from direct assay 16887 // ATPase activity // inferred from direct assay 869.230895996094 619.864685058594 1008.87237548828 1022.52239990234 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL150C /GEN=INO80 /DB_XREF=GI:6321289 /SEG=NC_001139:-221107,225576 /DEF=ATPase that forms a large complex, containing actin and several actin-related proteins, that has chromatin remodeling activity and 3' to 5' DNA helicase activity in vitro; shows similarity to the Snf2p family of ATPases /NOTE=Ino80p; go_component: chromatin remodeling complex [goid GO:0016585] [evidence IDA] [pmid 10952318]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 10952318]; go_process: DNA repair [goid GO:0006281] [evidence IDA,IMP] [pmid 10952318]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 10952318]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IDA,IMP] [pmid 10952318] --- --- --- --- --- --- S0003118 // INO80 SGDID:S0003118, Chr VII from 225578-221109, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019236 // cdna:Genscan chromosome:SGD1:VII:221109:225578:-1 // ensembl // 11 // --- /// GENEFINDER00000021414 // cdna:GeneFinder chromosome:SGD1:VII:221109:225578:-1 // ensembl // 11 // --- /// YGL150C // cdna:known chromosome:SGD1:VII:221109:225578:-1 gene:YGL150C // ensembl // 11 // --- --- No cerevisiae_gene -1.35155262939369 -1.40229136608085 1.24118976687744 1.16064946625277 1.1763530318726 Max fold change below threshold 4 1.40229136608085 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775848_at YGR006W.S1 Splicing factor involved in the positioning of the 3' splice site during the second catalytic step of splicing, recruited to the spliceosome by Slu7p 1.40226126951147 113.998016357422 97.0509452819824 PRP18 398 // nuclear mRNA splicing, via spliceosome // inferred from mutant phenotype 5681 // spliceosome complex // inferred from direct assay 5515 // protein binding // inferred from mutant phenotype /// 31202 // RNA splicing factor activity, transesterification mechanism // traceable author statement 98.1736450195313 92.8403167724609 135.155715942383 95.9282455444336 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR006W /GEN=PRP18 /DB_XREF=GI:41629693 /SEG=NC_001139:+506072,506827 /DEF=Splicing factor involved in the positioning of the 3' splice site during the second catalytic step of splicing, recruited to the spliceosome by Slu7p /NOTE=Prp18p; go_component: spliceosome complex [goid GO:0005681] [evidence IDA] [pmid 12212850]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence TAS] [pmid 12711678]; go_function: protein binding [goid GO:0005515] [evidence IMP] [pmid 12403466]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IMP] [pmid 12403466] --- --- --- --- --- --- S0003238 // PRP18 SGDID:S0003238, Chr VII from 506074-506829, Verified ORF // sgd // 11 // --- /// GENSCAN00000019345 // cdna:Genscan chromosome:SGD1:VII:506074:506829:1 // ensembl // 11 // --- /// YGR006W // cdna:known chromosome:SGD1:VII:506074:506829:1 gene:YGR006W // ensembl // 11 // --- --- No cerevisiae_gene 1.11179985787798 -1.05744625215079 1.40226126951147 1.37670059938687 -1.02340707330103 Max fold change below threshold 4 1.40226126951147 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769978_at YBR095C.S1 Protein possibly involved in cell fusion and invasive growth 1.40162702775225 1224.74475097656 956.2607421875 --- 747 // conjugation with cellular fusion // inferred from mutant phenotype /// 1403 // invasive growth (sensu Saccharomyces) // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 966.252197265625 1095.16430664063 1354.3251953125 946.269287109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR095C /GEN=PHO5 /DB_XREF=GI:37362619 /SEG=NC_001134:-434363,435655 /DEF=Hypothetical ORF /NOTE=Ybr095cp --- --- --- --- --- --- S0000299 // RXT2 SGDID:S0000299, Chr II from 435692-434400, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021216 // cdna:Genscan chromosome:SGD1:II:434400:435692:-1 // ensembl // 11 // --- /// GENEFINDER00000022135 // cdna:GeneFinder chromosome:SGD1:II:434400:435692:-1 // ensembl // 11 // --- /// YBR095C // cdna:known chromosome:SGD1:II:434400:435692:-1 gene:YBR095C // ensembl // 11 // --- --- No cerevisiae_gene 1.10093944340865 1.13341455754492 1.25514424919696 1.40162702775225 -1.02111757237445 Max fold change below threshold 4 1.40162702775225 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778659_at YML110C.S1 2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase, involved in ubiquinone (Coenzyme Q) biosynthesis; located in mitochondria 1.40153698000522 1868.42755126953 1408.83636474609 COQ5 6743 // ubiquinone metabolism // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from mutant phenotype 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 43334 // 2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity // inferred from sequence similarity /// 43334 // 2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity // inferred from mutant phenotype 1344.04577636719 1853.12524414063 1883.72985839844 1473.626953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML110C /GEN=COQ5 /DB_XREF=GI:6323526 /SEG=NC_001145:-50031,50954 /DEF=2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase, involved in ubiquinone (Coenzyme Q) biosynthesis; located in mitochondria /NOTE=Coq5p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 9083048]; go_function: ubiquinone biosynthesis methyltransferase activity [goid GO:0008425] [evidence IMP,ISS] [pmid 9083049]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 9083049]; go_process: ubiquinone metabolism [goid GO:0006743] [evidence IMP] [pmid 9083048] --- --- --- --- --- --- S0004578 // COQ5 SGDID:S0004578, Chr XIII from 50954-50031, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018625 // cdna:Genscan chromosome:SGD1:XIII:50031:50954:-1 // ensembl // 11 // --- /// GENEFINDER00000021832 // cdna:GeneFinder chromosome:SGD1:XIII:50031:50954:-1 // ensembl // 11 // --- /// YML110C // cdna:known chromosome:SGD1:XIII:50031:50954:-1 gene:YML110C // ensembl // 11 // --- --- No cerevisiae_gene 1.10075661943233 1.37876646519393 1.16145601308869 1.40153698000522 1.09641128229133 Max fold change below threshold 4 1.40153698000522 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769371_at YGR267C.S1 GTP-cyclohydrolase I, catalyzes the first step in the folic acid biosynthetic pathway 1.40131591913374 2138.80297851563 1634.7568359375 FOL2 9396 // folic acid and derivative biosynthesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3934 // GTP cyclohydrolase I activity // inferred from mutant phenotype 1635.1748046875 2291.396484375 1986.20947265625 1634.3388671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR267C /GEN=FOL2 /DB_XREF=GI:6321706 /SEG=NC_001139:-1025009,1025740 /DEF=GTP-cyclohydrolase I, catalyzes the first step in the folic acid biosynthetic pathway /NOTE=Fol2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: GTP cyclohydrolase I activity [goid GO:0003934] [evidence IMP] [pmid 8573145]; go_process: folic acid and derivative biosynthesis [goid GO:0009396] [evidence IMP] [pmid 8573145] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 6.19999980926514 --- S0003499 // FOL2 SGDID:S0003499, Chr VII from 1025741-1025010, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019547 // cdna:Genscan chromosome:SGD1:VII:1024965:1025741:-1 // ensembl // 11 // --- /// GENEFINDER00000021700 // cdna:GeneFinder chromosome:SGD1:VII:1024965:1025741:-1 // ensembl // 11 // --- /// YGR267C // cdna:known chromosome:SGD1:VII:1025010:1025741:-1 gene:YGR267C // ensembl // 11 // --- Z49756 // gb // 4 // Cross Hyb Matching Probes No cerevisiae_gene -1.13880276420423 1.40131591913374 1.05045362003178 1.21467715070123 -1.00051148358323 Max fold change below threshold 4 1.40131591913374 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780210_at YOR052C.S1 Hypothetical protein 1.40107381754239 4430.46301269531 3574.22045898438 --- --- 5634 // nucleus // inferred from direct assay --- 3841.07739257813 5012.67431640625 3848.25170898438 3307.36352539063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR052C /GEN=RSB1 /DB_XREF=GI:6324626 /SEG=NC_001147:-426773,427225 /DEF=Hypothetical ORF /NOTE=Yor052cp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005578 // YOR052C SGDID:S0005578, Chr XV from 427225-426773, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017502 // cdna:Genscan chromosome:SGD1:XV:426773:427225:-1 // ensembl // 11 // --- /// YOR052C // cdna:known chromosome:SGD1:XV:426773:427225:-1 gene:YOR052C // ensembl // 11 // --- --- No cerevisiae_gene -1.40107381754239 1.3050177864398 -1.18767047747091 1.00186778751715 -1.16137139540005 Max fold change below threshold 4 1.40107381754239 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771614_at YDR306C.S1 Hypothetical protein 1.40074522952075 1294.16815185547 1657.84027099609 --- 6511 // ubiquitin-dependent protein catabolism // inferred from sequence similarity 151 // ubiquitin ligase complex // inferred from sequence similarity 5515 // protein binding // inferred from sequence similarity 1603.32971191406 1191.94750976563 1396.38879394531 1712.35083007813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR306C /GEN=HNT2 /DB_XREF=GI:6320512 /SEG=NC_001136:-1073727,1075163 /DEF=Hypothetical ORF /NOTE=Ydr306cp; go_component: ubiquitin ligase complex [goid GO:0000151] [evidence ISS] [pmid 9635407]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 9635407]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence ISS] [pmid 9635407] --- --- --- --- --- --- S0002714 // YDR306C SGDID:S0002714, Chr IV from 1075165-1073729, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023649 // cdna:GeneFinder chromosome:SGD1:IV:1073729:1075165:-1 // ensembl // 11 // --- /// YDR306C // cdna:known chromosome:SGD1:IV:1073729:1075165:-1 gene:YDR306C // ensembl // 11 // --- --- No cerevisiae_gene -1.32530734531024 -1.34513449525083 1.40074522952075 -1.14819720615493 1.06799669297833 Max fold change below threshold 4 1.40074522952075 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772051_at YEL011W.S1 Glycogen branching enzyme, involved in glycogen accumulation; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.40046378698345 6847.42626953125 5243.966796875 GLC3 5977 // glycogen metabolism // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 3844 // 1,4-alpha-glucan branching enzyme activity // inferred from genetic interaction /// 3844 // 1,4-alpha-glucan branching enzyme activity // inferred from mutant phenotype 5809.00439453125 8135.30029296875 5559.55224609375 4678.92919921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL011W /GEN=GLC3 /DB_XREF=GI:6320826 /SEG=NC_001137:+133120,135234 /DEF=Glycogen branching enzyme, involved in glycogen accumulation; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Glc3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: 1,4-alpha-glucan branching enzyme activity [goid GO:0003844] [evidence IGI,IMP] [pmid 1729600]; go_process: glycogen metabolism [goid GO:0005977] [evidence IMP] [pmid 1729600] --- --- --- --- --- --- S0000737 // GLC3 SGDID:S0000737, Chr V from 133120-135234, Verified ORF // sgd // 10 // --- /// GENSCAN00000016795 // cdna:Genscan chromosome:SGD1:V:133120:135234:1 // ensembl // 10 // --- /// GENEFINDER00000019719 // cdna:GeneFinder chromosome:SGD1:V:133120:135234:1 // ensembl // 10 // --- /// YEL011W // cdna:known chromosome:SGD1:V:133120:135234:1 gene:YEL011W // ensembl // 10 // --- --- No cerevisiae_gene -1.27864272684174 1.40046378698345 -1.15014421224268 -1.04486910768988 -1.24152432045802 Max fold change below threshold 4 1.40046378698345 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769647_at YDR068W.S1 Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm 1.40046195956141 787.753631591797 570.764495849609 DOS2 --- 5737 // cytoplasm // inferred from direct assay --- 598.566833496094 737.237182617188 838.270080566406 542.962158203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR068W /GEN=DOS2 /DB_XREF=GI:6320273 /SEG=NC_001136:+583709,584641 /DEF=Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm /NOTE=Dos2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002475 // DOS2 SGDID:S0002475, Chr IV from 583710-584642, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023908 // cdna:GeneFinder chromosome:SGD1:IV:583710:584642:1 // ensembl // 11 // --- /// GENSCAN00000025148 // cdna:Genscan chromosome:SGD1:IV:583710:584642:1 // ensembl // 11 // --- /// YDR068W // cdna:known chromosome:SGD1:IV:583710:584642:1 gene:YDR068W // ensembl // 11 // --- --- No cerevisiae_gene 1.20042104966912 1.23167061948814 1.26239097110927 1.40046195956141 -1.10240985389661 Max fold change below threshold 4 1.40046195956141 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772126_at YBR040W.S1 Integral membrane protein required for efficient mating; may participate in or regulate the low affinity Ca2+ influx system, which affects intracellular signaling and cell-cell fusion during mating 1.40038579063139 29.5626220703125 25.6189908981323 FIG1 753 // cellular morphogenesis during conjugation with cellular fusion // inferred from mutant phenotype /// 755 // cytogamy // inferred from mutant phenotype 9277 // cell wall (sensu Fungi) // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay --- 27.326473236084 38.2676048278809 20.8576393127441 23.9115085601807 0.00195312988944352 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR040W /GEN=FIG1 /DB_XREF=GI:6319514 /SEG=NC_001134:+316930,317826 /DEF=Integral membrane protein required for efficient mating; may participate in or regulate the low affinity Ca2+ influx system, which affects intracellular signaling and cell-cell fusion during mating /NOTE=Fig1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 9456310]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 12374868]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cellular morphogenesis during conjugation with cellular fusion [goid GO:0000753] [evidence IMP] [pmid 9456310]; go_process: cytogamy [goid GO:0000755] [evidence IMP] [pmid 9456310] --- --- --- --- --- S0000244 // span:17-39,161-183,195-217,242-264 // numtm:4 S0000244 // FIG1 SGDID:S0000244, Chr II from 316968-317864, Verified ORF // sgd // 11 // --- /// YBR040W // cdna:known chromosome:SGD1:II:316968:317864:1 gene:YBR040W // ensembl // 11 // --- --- No cerevisiae_gene -1.10515098713054 1.40038579063139 -1.2668081998465 -1.31014218945609 -1.14281678076933 Max fold change below threshold 4 1.40038579063139 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777276_at YER098W.S1 Ubiquitin-specific protease that cleaves ubiquitin-protein fusions 1.40037195259244 697.964385986328 638.517517089844 UBP9 16579 // protein deubiquitination // traceable author statement 5737 // cytoplasm // inferred from curator 4843 // ubiquitin-specific protease activity // traceable author statement 608.697387695313 628.548217773438 767.380554199219 668.337646484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER098W /GEN=UBP9 /DB_XREF=GI:6320945 /SEG=NC_001137:+355462,357726 /DEF=Ubiquitin-specific protease that cleaves ubiquitin-protein fusions /NOTE=Ubp9p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 8982460]; go_function: ubiquitin-specific protease activity [goid GO:0004843] [evidence TAS] [pmid 8982460]; go_process: protein deubiquitination [goid GO:0016579] [evidence TAS] [pmid 8982460] --- --- --- --- --- --- S0000900 // UBP9 SGDID:S0000900, Chr V from 355462-357726, Verified ORF // sgd // 10 // --- /// GENSCAN00000016884 // cdna:Genscan chromosome:SGD1:V:355462:357726:1 // ensembl // 10 // --- /// GENEFINDER00000019652 // cdna:GeneFinder chromosome:SGD1:V:355726:357726:1 // ensembl // 10 // --- /// YER098W // cdna:known chromosome:SGD1:V:355462:357726:1 gene:YER098W // ensembl // 10 // --- --- No cerevisiae_gene -1.40037195259244 1.03261198500175 1.2195826127972 1.26069303025059 1.09798014579112 Max fold change below threshold 4 1.40037195259244 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770952_at YNL008C.S1 Putative integral membrane E3 ubiquitin ligase; genetic interactions suggest a role in negative regulation of amino acid uptake 1.40027311266782 991.285125732422 1336.94134521484 ASI3 6511 // ubiquitin-dependent protein catabolism // inferred from genetic interaction 5789 // endoplasmic reticulum membrane // inferred from genetic interaction /// 5789 // endoplasmic reticulum membrane // inferred from sequence similarity 4842 // ubiquitin-protein ligase activity // inferred from genetic interaction /// 4842 // ubiquitin-protein ligase activity // inferred from sequence similarity 1290.47192382813 1060.984375 921.585876464844 1383.41076660156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL008C /GEN=ASI3 /DB_XREF=GI:6324320 /SEG=NC_001146:-616209,618218 /DEF=Putative integral membrane E3 ubiquitin ligase; genetic interactions suggest a role in negative regulation of amino acid uptake /NOTE=Asi3p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IGI,ISS] [pmid 11454748]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence IGI,ISS] [pmid 11454748]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence IGI] [pmid 11454748] --- --- --- --- scop // a.4.1.Centromere-binding // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding // 8.89999961853027 S0004953 // span:73-95,116-135,150-169,264-286 // numtm:4 S0004953 // ASI3 SGDID:S0004953, Chr XIV from 618219-616210, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020031 // cdna:Genscan chromosome:SGD1:XIV:616210:617628:-1 // ensembl // 11 // --- /// GENEFINDER00000020535 // cdna:GeneFinder chromosome:SGD1:XIV:616210:617628:-1 // ensembl // 11 // --- /// YNL008C // cdna:known chromosome:SGD1:XIV:616210:618219:-1 gene:YNL008C // ensembl // 11 // --- --- No cerevisiae_gene -1.06538233469438 -1.21629682230535 -1.1465119033262 -1.40027311266782 1.07201926756976 Max fold change below threshold 4 1.40027311266782 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771993_at YBL051C.S1 Protein involved in G2/M phase progression and response to DNA damage, interacts with Rad53p; contains an RNA recognition motif, a nuclear localization signal, and several SQ/TQ cluster domains; hyperphosphorylated in response to DNA damage 1.40025764661068 542.665832519531 503.793212890625 PIN4 77 // DNA damage checkpoint // inferred from genetic interaction /// 77 // DNA damage checkpoint // inferred from physical interaction /// 86 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 478.290710449219 572.862365722656 512.469299316406 529.295715332031 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL051C /GEN=PIN4 /DB_XREF=GI:6319420 /SEG=NC_001134:-122718,124724 /DEF=[PSI+] induction /NOTE=Pin4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000147 // PIN4 SGDID:S0000147, Chr II from 124762-122756, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021098 // cdna:Genscan chromosome:SGD1:II:122756:124162:-1 // ensembl // 11 // --- /// GENEFINDER00000022149 // cdna:GeneFinder chromosome:SGD1:II:122756:124762:-1 // ensembl // 11 // --- /// YBL051C // cdna:known chromosome:SGD1:II:122756:124762:-1 gene:YBL051C // ensembl // 11 // --- --- No cerevisiae_gene 1.40025764661068 1.19772839657416 -1.00616398324257 1.07145986346899 1.10664017462289 Max fold change below threshold 4 1.40025764661068 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778018_at YOR142W.S1 Alpha subunit of succinyl-CoA ligase, which is a mitochondrial enzyme of the TCA cycle that catalyzes the nucleotide-dependent conversion of succinyl-CoA to succinate 1.40009985303175 3688.13635253906 3130.02038574219 LSC1 6099 // tricarboxylic acid cycle // traceable author statement /// 6104 // succinyl-CoA metabolism // traceable author statement /// 6104 // succinyl-CoA metabolism // inferred from direct assay 5739 // mitochondrion // inferred from direct assay /// 42645 // mitochondrial nucleoid // inferred from direct assay 4775 // succinate-CoA ligase (ADP-forming) activity // inferred from direct assay /// 4775 // succinate-CoA ligase (ADP-forming) activity // inferred from sequence similarity /// 4775 // succinate-CoA ligase (ADP-forming) activity // inferred from mutant phenotype 3282.890625 3698.939453125 3677.33325195313 2977.15014648438 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR142W /GEN=LSC1 /DB_XREF=GI:6324716 /SEG=NC_001147:+593057,594046 /DEF=alpha subunit of succinyl-CoA ligase (synthetase; ATP-forming), a mitochondrial enzyme of the TCA cycle /NOTE=Lsc1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 9874242]; go_function: succinate-CoA ligase (ADP-forming) activity [goid GO:0004775] [evidence IDA,IMP,ISS] [pmid 9874242]; go_process: succinyl-CoA metabolism [goid GO:0006104] [evidence TAS] [pmid 9175438]; go_process: succinyl-CoA metabolism [goid GO:0006104] [evidence IDA] [pmid 9874242]; go_process: tricarboxylic acid cycle [goid GO:0006099] [evidence TAS] [pmid 9175438] --- --- --- --- --- --- S0005668 // LSC1 SGDID:S0005668, Chr XV from 593057-594046, Verified ORF // sgd // 11 // --- /// GENSCAN00000017567 // cdna:Genscan chromosome:SGD1:XV:593057:594046:1 // ensembl // 11 // --- /// GENEFINDER00000022635 // cdna:GeneFinder chromosome:SGD1:XV:593057:594046:1 // ensembl // 11 // --- /// YOR142W // cdna:known chromosome:SGD1:XV:593057:594046:1 gene:YOR142W // ensembl // 11 // --- --- No cerevisiae_gene -1.40009985303175 1.12673246709978 -1.11095854081104 1.12015101080412 -1.10269568663732 Max fold change below threshold 4 1.40009985303175 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776898_at SPBC30B4.01c.S1 --- 1.40002277682937 --- --- --- --- 13.0369710922241 14.051308631897 17.2006816864014 10.8375291824341 0.0676269978284836 0.0952147990465164 0.194580003619194 0.0461426004767418 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC30B4.01c /DEF=transmembrane receptor activity (predicted) --- --- --- --- --- --- SPBC30B4.01c // |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.40002277682937 1.07780469347499 -1.20257589238352 1.31937714402548 -1.20294680390388 Max fold change below threshold 4 1.40002277682937 Max fold change below threshold AAAPAP No 4 0 AAAP 3 1 0 No No x = 1
1777733_at YDR378C.S1 Component of small nuclear ribonucleoprotein complexes involved in RNA processing, splicing, and decay 1.39990387979785 1062.83944702148 1201.07214355469 LSM6 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction /// 398 // nuclear mRNA splicing, via spliceosome // traceable author statement /// 6402 // mRNA catabolism // traceable author statement 5688 // snRNP U6 // traceable author statement /// 5730 // nucleolus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 3723 // RNA binding // traceable author statement 1155.77624511719 1300.06774902344 825.611145019531 1246.36804199219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR378C /GEN=LSM6 /DB_XREF=GI:6320586 /SEG=NC_001136:-1229337,1229708 /DEF=Like Sm-F protein /NOTE=Lsm6p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence IDA] [pmid 10377396]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10377396] --- --- --- --- --- --- S0002786 // LSM6 SGDID:S0002786, Chr IV from 1229710-1229339, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025399 // cdna:Genscan chromosome:SGD1:IV:1229339:1229710:-1 // ensembl // 11 // --- /// YDR378C // cdna:known chromosome:SGD1:IV:1229339:1229710:-1 gene:YDR378C // ensembl // 11 // --- --- No cerevisiae_gene -1.3416621239004 1.12484380477263 -1.08375545619602 -1.39990387979785 1.07838177783782 Max fold change below threshold 4 1.39990387979785 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774930_at YCR053W.S1 Threonine synthase, conserved protein that catalyzes formation of threonine from 0-phosphohomoserine; expression is regulated by the GCN4-mediated general amino acid control pathway 1.39964584971786 1328.09942626953 1545.92468261719 THR4 6566 // threonine metabolism // traceable author statement /// 6897 // endocytosis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4795 // threonine synthase activity // inferred from direct assay 1498.13916015625 1265.56262207031 1390.63623046875 1593.71020507813 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR053W /GEN=THR4 /DB_XREF=GI:6319901 /SEG=NC_001135:+216692,218236 /DEF=threonine synthase /NOTE=Thr4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: threonine synthase activity [goid GO:0004795] [evidence IDA] [pmid 8082795]; go_process: threonine metabolism [goid GO:0006566] [evidence TAS] [pmid 11752249] --- --- --- --- --- --- S0000649 // THR4 SGDID:S0000649, Chr III from 216692-218236, Verified ORF // sgd // 11 // --- /// GENSCAN00000022496 // cdna:Genscan chromosome:SGD1:III:216692:218236:1 // ensembl // 11 // --- /// GENEFINDER00000023380 // cdna:GeneFinder chromosome:SGD1:III:216692:218236:1 // ensembl // 11 // --- /// YCR053W // cdna:known chromosome:SGD1:III:216692:218236:1 gene:YCR053W // ensembl // 11 // --- --- No cerevisiae_gene 1.39964584971786 -1.18377323573722 1.00796267765773 -1.07730485322626 1.06379316919525 Max fold change below threshold 4 1.39964584971786 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772654_at YBL082C.S1 Dolichol-P-Man dependent alpha(1-3) mannosyltransferase, involved in the synthesis of dolichol-linked oligosaccharide donor for N-linked glycosylation of proteins 1.39935130199411 503.652679443359 617.586853027344 ALG3 6486 // protein amino acid glycosylation // inferred from mutant phenotype /// 6488 // dolichol-linked oligosaccharide biosynthesis // traceable author statement 5783 // endoplasmic reticulum // inferred from mutant phenotype /// 5783 // endoplasmic reticulum // inferred from sequence similarity 33 // alpha-1,3-mannosyltransferase activity // inferred from direct assay /// 33 // alpha-1,3-mannosyltransferase activity // inferred from mutant phenotype 629.692199707031 449.988647460938 557.316711425781 605.481506347656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL082C /GEN=RHK1 /DB_XREF=GI:6319389 /SEG=NC_001134:-69748,71124 /DEF=Resistance to Hansenula Killer 1, hypothetical F-458 protein /NOTE=Rhk1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IMP,ISS] [pmid 8842708]; go_function: alpha-1,3-mannosyltransferase activity [goid GO:0000033] [evidence IDA,IMP] [pmid 11308030]; go_process: dolichol-linked oligosaccharide biosynthesis [goid GO:0006488] [evidence TAS] [pmid 10336995]; go_process: protein amino acid glycosylation [goid GO:0006486] [evidence IMP] [pmid 8842708] --- --- --- --- --- S0000178 // span:35-57,128-150,170-192,205-227,242-264,303-320,351-370,377-399,419-441 // numtm:9 S0000178 // RHK1 SGDID:S0000178, Chr II from 71124-69748, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021075 // cdna:Genscan chromosome:SGD1:II:69748:71124:-1 // ensembl // 11 // --- /// GENEFINDER00000022287 // cdna:GeneFinder chromosome:SGD1:II:69748:71124:-1 // ensembl // 11 // --- /// YBL083C // cdna:known chromosome:SGD1:II:69710:70135:-1 gene:YBL083C // ensembl // 9 // --- /// YBL082C // cdna:known chromosome:SGD1:II:69748:71124:-1 gene:YBL082C // ensembl // 11 // --- --- No cerevisiae_gene 1.01446745948411 -1.39935130199411 1.20993697996012 -1.12986419893294 -1.03998585110455 Max fold change below threshold 4 1.39935130199411 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778954_at YJL121C.S1 D-ribulose-5-phosphate 3-epimerase, catalyzes a reaction in the non-oxidative part of the pentose-phosphate pathway; mutants are sensitive to oxidative stress 1.39909456115881 860.872772216797 951.498992919922 RPE1 6098 // pentose-phosphate shunt // inferred from mutant phenotype 5829 // cytosol // traceable author statement 4750 // ribulose-phosphate 3-epimerase activity // inferred from direct assay /// 4750 // ribulose-phosphate 3-epimerase activity // inferred from sequence similarity /// 4750 // ribulose-phosphate 3-epimerase activity // inferred from mutant phenotype 874.017761230469 680.998962402344 1040.74658203125 1028.98022460938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL121C /GEN=RPE1 /DB_XREF=GI:6322341 /SEG=NC_001142:-190294,191010 /DEF=D-ribulose-5-Phosphate 3-epimerase /NOTE=Rpe1p; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 11298766]; go_function: ribulose-phosphate 3-epimerase activity [goid GO:0004750] [evidence IDA,IMP,ISS] [pmid 8929392]; go_process: pentose-phosphate shunt [goid GO:0006098] [evidence IMP] [pmid 8929392] --- --- --- --- --- --- S0003657 // RPE1 SGDID:S0003657, Chr X from 191010-190294, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024044 // cdna:Genscan chromosome:SGD1:X:190294:191010:-1 // ensembl // 11 // --- /// GENEFINDER00000024340 // cdna:GeneFinder chromosome:SGD1:X:190294:191010:-1 // ensembl // 11 // --- /// YJL121C // cdna:known chromosome:SGD1:X:190294:191010:-1 gene:YJL121C // ensembl // 11 // --- --- No cerevisiae_gene 1.39909456115881 -1.28343479136476 1.13831067478301 1.19076136458149 1.17729898664845 Max fold change below threshold 4 1.39909456115881 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775518_at YHR074W.S1 Glutamine-dependent NAD(+) synthetase, essential for the formation of NAD(+) from nicotinic acid adenine dinucleotide 1.39901018660673 1835.78283691406 1400.11932373047 QNS1 9435 // NAD biosynthesis // inferred from direct assay /// 9435 // NAD biosynthesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3952 // NAD+ synthase (glutamine-hydrolyzing) activity // inferred from sequence similarity /// 3952 // NAD+ synthase (glutamine-hydrolyzing) activity // inferred from direct assay /// 3952 // NAD+ synthase (glutamine-hydrolyzing) activity // inferred from mutant phenotype /// 16811 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides // inferred from direct assay /// 16811 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides // inferred from mutant phenotype 1374.42553710938 1748.73034667969 1922.83532714844 1425.81311035156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR074W /GEN=QNS1 /DB_XREF=GI:6321865 /SEG=NC_001140:+246194,248338 /DEF=Glutamine-dependent NAD Synthetase /NOTE=Qns1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12898714]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12898714]; go_function: NAD+ synthase (glutamine-hydrolyzing) activity [goid GO:0003952] [evidence ISS] [pmid 11380987]; go_function: NAD+ synthase (glutamine-hydrolyzing) activity [goid GO:0003952] [evidence IDA,IMP] [pmid 12898714]; go_function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [goid GO:0016811] [evidence IDA,IMP] [pmid 12771147]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001116 // QNS1 SGDID:S0001116, Chr VIII from 246194-248338, Verified ORF // sgd // 11 // --- /// GENSCAN00000016618 // cdna:Genscan chromosome:SGD1:VIII:246194:248338:1 // ensembl // 11 // --- /// GENEFINDER00000020169 // cdna:GeneFinder chromosome:SGD1:VIII:246398:248338:1 // ensembl // 11 // --- /// YHR074W // cdna:known chromosome:SGD1:VIII:246194:248338:1 gene:YHR074W // ensembl // 11 // --- --- No cerevisiae_gene 1.243762353128 1.27233545904388 -1.01679900632821 1.39901018660673 1.03738840108447 Max fold change below threshold 4 1.39901018660673 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778889_at YPL059W.S1 Hydroperoxide and superoxide-radical responsive glutathione-dependent oxidoreductase; mitochondrial matrix protein involved in the synthesis/assembly of iron-sulfur centers; monothiol glutaredoxin subfamily member along with Grx3p and Grx4p 1.39878754328101 1898.27386474609 1377.09161376953 GRX5 6970 // response to osmotic stress // inferred from mutant phenotype /// 6979 // response to oxidative stress // inferred from mutant phenotype /// 6979 // response to oxidative stress // inferred from genetic interaction /// 16226 // iron-sulfur cluster assembly // traceable author statement 5759 // mitochondrial matrix // traceable author statement /// 5759 // mitochondrial matrix // inferred from direct assay 30508 // thiol-disulfide exchange intermediate activity // inferred from mutant phenotype /// 30508 // thiol-disulfide exchange intermediate activity // inferred from genetic interaction /// 30508 // thiol-disulfide exchange intermediate activity // inferred from direct assay /// 30508 // thiol-disulfide exchange intermediate activity // inferred from sequence similarity 1379.49914550781 1929.62622070313 1866.92150878906 1374.68408203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL059W /GEN=GRX5 /DB_XREF=GI:6325198 /SEG=NC_001148:+444574,445026 /DEF=Hydroperoxide and superoxide-radical responsive glutathione-dependent oxidoreductase; mitochondrial matrix protein involved in the synthesis/assembly of iron-sulfur centers; monothiol glutaredoxin subfamily member along with Grx3p and Grx4p /NOTE=Grx5p; go_component: mitochondrial matrix [goid GO:0005759] [evidence TAS] [pmid 11950925]; go_function: thiol-disulfide exchange intermediate activity [goid GO:0030508] [evidence IGI,IMP,ISS] [pmid 10567543]; go_function: thiol-disulfide exchange intermediate activity [goid GO:0030508] [evidence IDA] [pmid 12730244]; go_process: response to osmotic stress [goid GO:0006970] [evidence IMP] [pmid 10567543]; go_process: response to oxidative stress [goid GO:0006979] [evidence IGI,IMP] [pmid 10567543] --- --- --- --- --- --- S0005980 // GRX5 SGDID:S0005980, Chr XVI from 444576-445028, Verified ORF // sgd // 11 // --- /// GENSCAN00000017144 // cdna:Genscan chromosome:SGD1:XVI:444576:445028:1 // ensembl // 11 // --- /// GENEFINDER00000020939 // cdna:GeneFinder chromosome:SGD1:XVI:444576:445028:1 // ensembl // 11 // --- /// YPL059W // cdna:known chromosome:SGD1:XVI:444576:445028:1 gene:YPL059W // ensembl // 11 // --- --- No cerevisiae_gene 1.13301230163341 1.39878754328101 1.09196408732541 1.35333284900428 -1.00350266911467 Max fold change below threshold 4 1.39878754328101 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779820_at YHR026W.S1 Subunit c'' of the vacuolar ATPase, which functions in acidification of the vacuole; one of three proteolipid subunits of the V0 domain 1.39802642441692 2505.2080078125 3238.13586425781 PPA1 7035 // vacuolar acidification // traceable author statement 220 // hydrogen-transporting ATPase V0 domain // traceable author statement /// 16021 // integral to membrane // inferred from direct assay 46961 // hydrogen-transporting ATPase activity, rotational mechanism // traceable author statement 3400.46411132813 2432.33178710938 2578.08422851563 3075.8076171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR026W /GEN=PPA1 /DB_XREF=GI:6321815 /SEG=NC_001140:+160836,161477 /DEF=Subunit c'' of the vacuolar ATPase, which functions in acidification of the vacuole; one of three proteolipid subunits of the V0 domain /NOTE=Ppa1p; go_component: hydrogen-transporting ATPase V0 domain [goid GO:0000220] [evidence TAS] [pmid 9442887]; go_function: hydrogen-transporting ATPase activity, rotational mechanism [goid GO:0046961] [evidence TAS] [pmid 9442887]; go_process: vacuolar acidification [goid GO:0007035] [evidence TAS] [pmid 9442887] --- --- --- --- --- S0001068 // span:20-38,59-81,101-123,143-165,185-207 // numtm:5 S0001068 // PPA1 SGDID:S0001068, Chr VIII from 160836-161477, Verified ORF // sgd // 11 // --- /// GENSCAN00000016574 // cdna:Genscan chromosome:SGD1:VIII:160836:161477:1 // ensembl // 11 // --- /// GENEFINDER00000020241 // cdna:GeneFinder chromosome:SGD1:VIII:160836:161477:1 // ensembl // 11 // --- /// YHR026W // cdna:known chromosome:SGD1:VIII:160836:161477:1 gene:YHR026W // ensembl // 11 // --- --- No cerevisiae_gene 1.00420388674828 -1.39802642441692 -1.14023031696211 -1.31898875673507 -1.10555162563694 Max fold change below threshold 4 1.39802642441692 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775759_at YBR205W.S1 Putative alpha-1,2-mannosyltransferase involved in O- and N-linked protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family 1.39794605622566 596.382537841797 708.78759765625 KTR3 6487 // N-linked glycosylation // inferred from mutant phenotype /// 6493 // O-linked glycosylation // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5624 // membrane fraction // inferred from sequence similarity 30 // mannosyltransferase activity // inferred from mutant phenotype /// 30 // mannosyltransferase activity // inferred from sequence similarity 684.121643066406 489.376281738281 703.388793945313 733.453552246094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR205W /GEN=KTR3 /DB_XREF=GI:6319682 /SEG=NC_001134:+633579,634793 /DEF=Putative alpha-1,2-mannosyltransferase /NOTE=Ktr3p; go_component: membrane fraction [goid GO:0005624] [evidence ISS] [pmid 9182588]; go_function: mannosyltransferase activity [goid GO:0000030] [evidence IMP,ISS] [pmid 9182588]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IMP] [pmid 9182588]; go_process: O-linked glycosylation [goid GO:0006493] [evidence IMP] [pmid 9182588]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9878809] --- --- --- --- --- S0000409 // span:27-44 // numtm:1 S0000409 // KTR3 SGDID:S0000409, Chr II from 633617-634831, Verified ORF // sgd // 11 // --- /// GENSCAN00000021305 // cdna:Genscan chromosome:SGD1:II:633617:634831:1 // ensembl // 11 // --- /// GENEFINDER00000022323 // cdna:GeneFinder chromosome:SGD1:II:633617:634831:1 // ensembl // 11 // --- /// YBR205W // cdna:known chromosome:SGD1:II:633617:634831:1 gene:YBR205W // ensembl // 11 // --- YBR206W // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 1.00235942797388 -1.39794605622566 -1.00644941560084 1.02816334064882 1.07210985017017 Max fold change below threshold 4 1.39794605622566 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773214_at YGR005C.S1 transcription initiation factor TFIIF middle subunit 1.39758933642829 845.249206542969 846.336486816406 TFG2 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement 5674 // transcription factor TFIIF complex // traceable author statement 16251 // general RNA polymerase II transcription factor activity // traceable author statement 793.46142578125 581.565185546875 1108.93322753906 899.211547851563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR005C /GEN=TFG2 /DB_XREF=GI:6321442 /SEG=NC_001139:-504659,505861 /DEF=transcription initiation factor TFIIF middle subunit /NOTE=Tfg2p; go_component: transcription factor TFIIF complex [goid GO:0005674] [evidence TAS] [pmid 9774381]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9774381]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 10384286] --- --- --- --- --- --- S0003237 // TFG2 SGDID:S0003237, Chr VII from 505863-504661, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019344 // cdna:Genscan chromosome:SGD1:VII:504661:505863:-1 // ensembl // 11 // --- /// GENEFINDER00000021633 // cdna:GeneFinder chromosome:SGD1:VII:504661:505863:-1 // ensembl // 11 // --- /// YGR005C // cdna:known chromosome:SGD1:VII:504661:505863:-1 gene:YGR005C // ensembl // 11 // --- --- No cerevisiae_gene 1.25228029506298 -1.36435509810498 1.12395985191467 1.39758933642829 1.13327695415841 Max fold change below threshold 4 1.39758933642829 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777440_at YGL139W.S1 Hypothetical protein 1.39748973194583 313.497497558594 389.623168945313 --- --- 5739 // mitochondrion // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity --- 369.386169433594 288.159576416016 338.835418701172 409.860168457031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL139W /GEN=HUL5 /DB_XREF=GI:6321299 /SEG=NC_001139:+245719,248127 /DEF=Hypothetical ORF /NOTE=Ygl139wp; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 9046099]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003107 // span:170-192,197-219,256-278,324-346,377-399,404-426,468-490,494-516,523-542,557-579 // numtm:10 S0003107 // YGL139W SGDID:S0003107, Chr VII from 245721-248129, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019245 // cdna:Genscan chromosome:SGD1:VII:245721:248129:1 // ensembl // 11 // --- /// GENEFINDER00000021749 // cdna:GeneFinder chromosome:SGD1:VII:245721:248129:1 // ensembl // 11 // --- /// YGL139W // cdna:known chromosome:SGD1:VII:245721:248129:1 gene:YGL139W // ensembl // 11 // --- --- No cerevisiae_gene -1.01922010759367 -1.28188059556387 1.39748973194583 -1.09016398241226 1.10957096494841 Max fold change below threshold 4 1.39748973194583 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770551_at YGL038C.S1 Mannosyltransferase of the cis-Golgi apparatus, initiates the polymannose outer chain elongation of N-linked oligosaccharides of glycoproteins 1.39743528071703 703.296722412109 892.486114501953 OCH1 6487 // N-linked glycosylation // inferred from mutant phenotype 137 // Golgi cis cisterna // inferred from direct assay 9 // alpha-1,6-mannosyltransferase activity // inferred from mutant phenotype /// 9 // alpha-1,6-mannosyltransferase activity // inferred from direct assay /// 16757 // transferase activity, transferring glycosyl groups // inferred from sequence similarity 916.685729980469 750.6162109375 655.977233886719 868.286499023438 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL038C /GEN=OCH1 /DB_XREF=GI:6321400 /SEG=NC_001139:-425366,426808 /DEF=Mannosyltransferase of the cis-Golgi apparatus, initiates the polymannose outer chain elongation of N-linked oligosaccharides of glycoproteins /NOTE=Och1p; go_component: Golgi cis cisterna [goid GO:0000137] [evidence IDA] [pmid 1628616]; go_function: alpha-1,6-mannosyltransferase activity [goid GO:0000009] [evidence IMP] [pmid 8253757]; go_function: transferase activity, transferring glycosyl groups [goid GO:0016757] [evidence ISS] [pmid 9653120]; go_process: N-linked glycoprotein maturation [goid GO:0006492] [evidence NAS] [pmid 9878809] --- --- --- --- --- S0003006 // span:16-33 // numtm:1 S0003006 // OCH1 SGDID:S0003006, Chr VII from 426810-425368, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019315 // cdna:Genscan chromosome:SGD1:VII:425368:426249:-1 // ensembl // 11 // --- /// GENEFINDER00000021727 // cdna:GeneFinder chromosome:SGD1:VII:425368:426810:-1 // ensembl // 11 // --- /// YGL038C // cdna:known chromosome:SGD1:VII:425368:426810:-1 gene:YGL038C // ensembl // 11 // --- --- No cerevisiae_gene 1.05026080667667 -1.22124424789008 -1.05220422696789 -1.39743528071703 -1.05574108432121 Max fold change below threshold 4 1.39743528071703 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775432_at YLR229C.S1 Small rho-like GTPase, essential for establishment and maintenance of cell polarity; mutants have defects in the organization of actin and septins 1.39729042868944 2357.19775390625 2100.84906005859 CDC42 750 // signal transduction during conjugation with cellular fusion // inferred from genetic interaction /// 750 // signal transduction during conjugation with cellular fusion // inferred from mutant phenotype /// 1403 // invasive growth (sensu Saccharomyces) // inferred from mutant phenotype /// 6887 // exocytosis // inferred from genetic interaction /// 7096 // regulation of exit from mitosis // inferred from mutant phenotype /// 7118 // budding cell apical bud growth // inferred from mutant phenotype /// 7119 // budding cell isotropic bud growth // inferred from mutant phenotype /// 7124 // pseudohyphal growth // inferred from mutant phenotype /// 7266 // Rho protein signal transduction // traceable author statement /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype /// 31384 // regulation of initiation of mating projection growth // inferred from mutant phenotype 5625 // soluble fraction // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay 3924 // GTPase activity // inferred from direct assay /// 4871 // signal transducer activity // traceable author statement 1845.28332519531 2472.37036132813 2242.02514648438 2356.41479492188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR229C /GEN=CDC42 /DB_XREF=GI:6323259 /SEG=NC_001144:-604214,604789 /DEF=Small rho-like GTPase, essential for establishment and maintenance of cell polarity; mutants have defects in the organization of actin and septins /NOTE=Cdc42p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 9891811]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 9891811]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 10066831]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 10066831]; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 10066831]; go_function: GTPase activity [goid GO:0003924] [evidence IDA] [pmid 9891811]; go_function: signal transducer activity [goid GO:0004871] [evidence TAS] [pmid 9891811]; go_process: Rho protein signal transduction [goid GO:0007266] [evidence TAS] [pmid 9891811]; go_process: apical bud growth [goid GO:0007118] [evidence IMP] [pmid 10066831]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IMP] [pmid 9891811]; go_process: exocytosis [goid GO:0006887] [evidence IGI] [pmid 11595741]; go_process: invasive growth (sensu Saccharomyces) [goid GO:0001403] [evidence IMP] [pmid 10066831]; go_process: isotropic bud growth [goid GO:0007119] [evidence IMP] [pmid 10066831]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 10066831]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence IGI,IMP] [pmid 11003652] --- --- --- --- --- --- S0004219 // CDC42 SGDID:S0004219, Chr XII from 604789-604214, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018000 // cdna:Genscan chromosome:SGD1:XII:604214:604789:-1 // ensembl // 11 // --- /// GENEFINDER00000024591 // cdna:GeneFinder chromosome:SGD1:XII:604214:604789:-1 // ensembl // 11 // --- /// YLR229C // cdna:known chromosome:SGD1:XII:604214:604789:-1 gene:YLR229C // ensembl // 11 // --- YLR230W // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene 1.39729042868944 1.33983238647997 1.33682336875431 1.21500320079415 1.2769934907814 Max fold change below threshold 4 1.39729042868944 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774125_at YNR032W.S1 Putative serine/threonine protein phosphatase, required for glycogen accumulation; interacts with Tap42p, which binds to and regulates other protein phosphatases 1.39719596622036 338.531494140625 365.224472045898 PPG1 5977 // glycogen metabolism // inferred from mutant phenotype /// 6470 // protein amino acid dephosphorylation // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 158 // protein phosphatase type 2A activity // inferred from sequence similarity 332.065124511719 270.305267333984 406.757720947266 398.383819580078 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR032W /GEN=PPG1 /DB_XREF=GI:6324359 /SEG=NC_001146:+686009,687115 /DEF=Putative serine/threonine protein phosphatase, required for glycogen accumulation; interacts with Tap42p, which binds to and regulates other protein phosphatases /NOTE=Ppg1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: protein phosphatase type 2A activity [goid GO:0000158] [evidence ISS] [pmid 7678255]; go_process: glycogen metabolism [goid GO:0005977] [evidence IMP] [pmid 7678255]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence ISS] [pmid 7678255] --- --- --- --- --- --- S0005315 // PPG1 SGDID:S0005315, Chr XIV from 686010-687116, Verified ORF // sgd // 11 // --- /// GENSCAN00000020062 // cdna:Genscan chromosome:SGD1:XIV:686010:687116:1 // ensembl // 11 // --- /// GENEFINDER00000020657 // cdna:GeneFinder chromosome:SGD1:XIV:686010:687116:1 // ensembl // 11 // --- /// YNR032W // cdna:known chromosome:SGD1:XIV:686010:687116:1 gene:YNR032W // ensembl // 11 // --- --- No cerevisiae_gene -1.36787149856533 -1.22848188563571 1.39719596622036 1.22493357754861 1.19971592971673 Max fold change below threshold 4 1.39719596622036 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779845_at YJL001W.S1 20S proteasome beta-type subunit, responsible for cleavage after acidic residues in peptides 1.39716072474972 2844.92919921875 2565.27478027344 PRE3 6511 // ubiquitin-dependent protein catabolism // traceable author statement /// 6950 // response to stress // traceable author statement /// 30437 // sporulation (sensu Fungi) // traceable author statement 19774 // proteasome core complex, beta-subunit complex (sensu Eukaryota) // traceable author statement /// 19774 // proteasome core complex, beta-subunit complex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement 2698.05004882813 2797.75415039063 2892.10424804688 2432.49951171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL001W /GEN=PRE3 /DB_XREF=GI:6322459 /SEG=NC_001142:+435078,435841 /DEF=20S proteasome beta-type subunit, responsible for cleavage after acidic residues in peptides /NOTE=Pre3p; go_component: proteasome core complex (sensu Eukarya) [goid GO:0005839] [evidence TAS] [pmid 10872471]; go_component: proteasome core complex, beta-subunit complex (sensu Eukarya) [goid GO:0019774] [evidence TAS] [pmid 10500111]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 10872471]; go_process: response to stress [goid GO:0006950] [evidence TAS] [pmid 8982460]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence TAS] [pmid 8982460]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10872471] --- --- --- --- --- --- S0003538 // PRE3 SGDID:S0003538, Chr X from 435078-435142,435259-435841, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000024132 // cdna:Genscan chromosome:SGD1:X:435260:435841:1 // ensembl // 10 // --- /// GENEFINDER00000024480 // cdna:GeneFinder chromosome:SGD1:X:435260:435841:1 // ensembl // 10 // --- /// YJL001W // cdna:known chromosome:SGD1:X:435078:435841:1 gene:YJL001W // ensembl // 11 // --- S78566 // gb // 2 // Cross Hyb Matching Probes /// X86020 // gb // 3 // Cross Hyb Matching Probes No cerevisiae_gene -1.39716072474972 1.03695413345123 1.08175346905358 1.07192386935262 -1.10916776584335 Max fold change below threshold 4 1.39716072474972 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774864_at YMR197C.S1 Protein involved in cis-Golgi membrane traffic; v-SNARE that interacts with two t-SNARES, Sed5p and Pep12p; required for multiple vacuolar sorting pathways 1.39705087771537 863.507263183594 1063.69104003906 VTI1 6891 // intra-Golgi transport // traceable author statement /// 6896 // Golgi to vacuole transport // traceable author statement /// 6906 // vesicle fusion // traceable author statement /// 8333 // endosome to lysosome transport // traceable author statement 30173 // integral to Golgi membrane // inferred from direct assay 5485 // v-SNARE activity // traceable author statement 1011.74426269531 724.200012207031 1002.81451416016 1115.63781738281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR197C /GEN=VTI1 /DB_XREF=GI:6323853 /SEG=NC_001145:-658544,659197 /DEF=Involved in cis-Golgi membrane traffic /NOTE=Vti1p; go_component: integral to Golgi membrane [goid GO:0030173] [evidence IDA] [pmid 9398683]; go_function: v-SNARE activity [goid GO:0005485] [evidence TAS] [pmid 10047442]; go_process: Golgi to vacuole transport [goid GO:0006896] [evidence TAS] [pmid 10047442]; go_process: endosome to lysosome transport [goid GO:0008333] [evidence TAS] [pmid 10047442]; go_process: intra-Golgi transport [goid GO:0006891] [evidence TAS] [pmid 10047442]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 10047442] --- --- --- --- --- AAC49745.1 // span:190-212 // numtm:1 /// S0004810 // span:190-212 // numtm:1 S0004810 // VTI1 SGDID:S0004810, Chr XIII from 659197-658544, reverse complement, Verified ORF // sgd // 11 // --- /// AF006074 // Saccharomyces cerevisiae v-SNARE Vti1p (VTI1) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000018879 // cdna:Genscan chromosome:SGD1:XIII:658544:659197:-1 // ensembl // 11 // --- /// YMR197C // cdna:known chromosome:SGD1:XIII:658544:659197:-1 gene:YMR197C // ensembl // 11 // --- --- No cerevisiae_gene 1.02562616362594 -1.39705087771537 1.39701665341692 -1.00890468616984 1.10268756494919 Max fold change below threshold 4 1.39705087771537 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769985_at SPBC13G1.01c.S1 --- 1.39657105407042 --- --- --- --- 16.5771179199219 23.151123046875 17.7625217437744 17.0465316772461 0.0676269978284836 0.0239257998764515 0.030273400247097 0.00805663969367743 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC13G1.01c /GEN=nam9 /DEF=mitochondrial ribosomal protein small subunit nam9 --- --- --- --- --- --- SPBC13G1.01c // |nam9||mitochondrial ribosomal protein small subunit S4|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- D89253 // gb // 7 // Cross Hyb Matching Probes No No -1.06823841431102 1.39657105407042 -1.27165416889188 1.07150843889624 1.02831697039207 Max fold change below threshold 4 1.39657105407042 Max fold change below threshold AAPAPP No 4 0 APPP 1 3 0 No No 2 < x = 3
AFFX-r2-Sc-ACT1-M_at AFFX-r2-Sc-ACT1-M Actin, structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions 1.39640896540538 6378.017578125 6143.06274414063 ACT1 1 // mitochondrion inheritance // traceable author statement /// 11 // vacuole inheritance // traceable author statement /// 132 // establishment of mitotic spindle orientation // traceable author statement /// 910 // cytokinesis // traceable author statement /// 1300 // chronological cell aging // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 6887 // exocytosis // traceable author statement /// 6897 // endocytosis // traceable author statement /// 6970 // response to osmotic stress // traceable author statement /// 7047 // cell wall organization and biogenesis // traceable author statement /// 7119 // budding cell isotropic bud growth // traceable author statement /// 9306 // protein secretion // traceable author statement /// 16573 // histone acetylation // inferred from direct assay /// 30037 // actin filament reorganization during cell cycle // traceable author statement /// 30050 // vesicle transport along actin filament // traceable author statement /// 30437 // sporulation (sensu Fungi) // traceable author statement /// 30468 // establishment of cell polarity (sensu Fungi) // traceable author statement 123 // histone acetyltransferase complex // inferred from direct assay /// 142 // contractile ring (sensu Saccharomyces) // traceable author statement /// 812 // SWR1 complex // inferred from physical interaction /// 5884 // actin filament // traceable author statement /// 30479 // actin cortical patch // traceable author statement /// 30482 // actin cable // traceable author statement /// 31011 // INO80 complex // inferred from physical interaction /// 43189 // H4/H2A histone acetyltransferase complex // inferred from physical interaction 5200 // structural constituent of cytoskeleton // traceable author statement 7159.2353515625 7580.52880859375 5175.50634765625 5126.89013671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=ACT1 SGD:YFL039C Actin (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- S0001855 // ACT1 SGDID:S0001855, Chr VI from 54695-54686,54377-53260, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018587 // cdna:GeneFinder chromosome:SGD1:VI:53260:54342:-1 // ensembl // 11 // --- /// GENSCAN00000023208 // cdna:Genscan chromosome:SGD1:VI:53260:54342:-1 // ensembl // 11 // --- /// YFL039C // cdna:known chromosome:SGD1:VI:53260:54695:-1 gene:YFL039C // ensembl // 11 // --- --- AFFX_control cerevisiae_gene -1.34110629890651 1.05884615274441 -1.35533121145813 -1.38329177294983 -1.39640896540538 Max fold change below threshold 4 1.39640896540538 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774241_at YLR027C.S1 Cytosolic aspartate aminotransferase, involved in nitrogen metabolism; localizes to peroxisomes in oleate-grown cells 1.39634941821216 5008.43530273438 5083.80419921875 AAT2 6532 // aspartate biosynthesis // traceable author statement /// 6533 // aspartate catabolism // traceable author statement /// 6536 // glutamate metabolism // non-traceable author statement /// 6807 // nitrogen compound metabolism // non-traceable author statement /// 19266 // asparagine biosynthesis from oxaloacetate // traceable author statement 5737 // cytoplasm // traceable author statement /// 5777 // peroxisome // traceable author statement 4069 // aspartate transaminase activity // inferred from direct assay 5608.3017578125 5340.88916015625 4675.9814453125 4559.306640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR027C /GEN=AAT2 /DB_XREF=GI:37362677 /SEG=NC_001144:-196830,198086 /DEF=Cytosolic aspartate aminotransferase, involved in nitrogen metabolism; localizes to peroxisomes in oleate-grown cells /NOTE=Aat2p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 9288922]; go_component: peroxisome [goid GO:0005777] [evidence TAS] [pmid 9288922]; go_function: aspartate transaminase activity [goid GO:0004069] [evidence IDA] [pmid 1859361]; go_process: asparagine biosynthesis from oxaloacetate [goid GO:0019266] [evidence TAS]; go_process: aspartate biosynthesis [goid GO:0006532] [evidence TAS]; go_process: aspartate catabolism [goid GO:0006533] [evidence TAS]; go_process: glutamate metabolism [goid GO:0006536] [evidence NAS] [pmid 1859361]; go_process: nitrogen metabolism [goid GO:0006807] [evidence NAS] [pmid 1859361] --- --- --- ec // AATC_YEAST // (P23542) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A) // 0.0 --- --- S0004017 // AAT2 SGDID:S0004017, Chr XII from 198086-196830, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017841 // cdna:Genscan chromosome:SGD1:XII:196830:198086:-1 // ensembl // 11 // --- /// GENEFINDER00000024813 // cdna:GeneFinder chromosome:SGD1:XII:196830:198086:-1 // ensembl // 11 // --- /// YLR027C // cdna:known chromosome:SGD1:XII:196830:198086:-1 gene:YLR027C // ensembl // 11 // --- --- No cerevisiae_gene -1.07766580281153 -1.05006892853182 -1.39634941821216 -1.19938494696864 -1.23007777275619 Max fold change below threshold 4 1.39634941821216 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769323_at YKL012W.S1 U1 snRNP protein involved in splicing, interacts with the branchpoint-binding protein during the formation of the second commitment complex 1.3961643678423 1018.59616088867 1204.22247314453 PRP40 398 // nuclear mRNA splicing, via spliceosome // inferred from direct assay 243 // commitment complex // inferred from physical interaction /// 243 // commitment complex // traceable author statement /// 5685 // snRNP U1 // inferred from physical interaction /// 5685 // snRNP U1 // inferred from direct assay /// 5685 // snRNP U1 // traceable author statement 3723 // RNA binding // inferred from direct assay 1158.46789550781 1004.42022705078 1032.77209472656 1249.97705078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL012W /GEN=PRP40 /DB_XREF=GI:6322840 /SEG=NC_001143:+417953,419704 /DEF=U1 snRNP protein involved in splicing, interacts with the branchpoint-binding protein during the formation of the second commitment complex /NOTE=Prp40p; go_component: commitment complex [goid GO:0000243] [evidence IPI,TAS] [pmid 10072386]; go_component: snRNP U1 [goid GO:0005685] [evidence IPI,TAS] [pmid 10072386]; go_component: snRNP U1 [goid GO:0005685] [evidence IDA] [pmid 11804584]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 8622699]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IDA] [pmid 8622699] --- --- --- --- --- --- S0001495 // PRP40 SGDID:S0001495, Chr XI from 417953-419704, Verified ORF // sgd // 11 // --- /// GENSCAN00000018409 // cdna:Genscan chromosome:SGD1:XI:417953:419704:1 // ensembl // 11 // --- /// GENEFINDER00000023184 // cdna:GeneFinder chromosome:SGD1:XI:417953:419704:1 // ensembl // 11 // --- /// YKL012W // cdna:known chromosome:SGD1:XI:417953:419704:1 gene:YKL012W // ensembl // 11 // --- --- No cerevisiae_gene -1.3961643678423 -1.15336973938623 1.09046235109196 -1.12170720086558 1.07899153323824 Max fold change below threshold 4 1.3961643678423 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769463_at YPL065W.S1 Component of the ESCRT-I complex, which is involved in ubiquitin-dependent sorting of proteins into the endosome; involved in transport of precursors for soluble vacuolar hydrolases from the late endosome to the vacuole 1.3960142838425 479.031707763672 650.394409179688 VPS28 6612 // protein-membrane targeting // inferred from mutant phenotype /// 6612 // protein-membrane targeting // inferred from physical interaction /// 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6623 // protein-vacuolar targeting // inferred from physical interaction /// 43162 // ubiquitin-dependent protein catabolism via the multivesicular body pathway // inferred from curator 813 // ESCRT I complex // traceable author statement /// 813 // ESCRT I complex // inferred from direct assay /// 5768 // endosome // inferred from direct assay --- 598.929748535156 529.035034179688 429.028381347656 701.859069824219 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL065W /GEN=VPS28 /DB_XREF=GI:6325192 /SEG=NC_001148:+427922,428650 /DEF=soluble, hydrophilic protein involved in transport of precursors for soluble vauolar hydrolases from the late endosome to the vacuole /NOTE=Vps28p; go_component: ESCRT I complex [goid GO:0000813] [evidence TAS] [pmid 12900393]; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 11511343]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-membrane targeting [goid GO:0006612] [evidence IMP,IPI] [pmid 11511343]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP,IPI] [pmid 11511343] --- --- --- --- --- --- S0005986 // VPS28 SGDID:S0005986, Chr XVI from 427924-428652, Verified ORF // sgd // 11 // --- /// GENSCAN00000017138 // cdna:Genscan chromosome:SGD1:XVI:427924:428652:1 // ensembl // 11 // --- /// GENEFINDER00000020745 // cdna:GeneFinder chromosome:SGD1:XVI:427924:428652:1 // ensembl // 11 // --- /// YPL065W // cdna:known chromosome:SGD1:XVI:427924:428652:1 gene:YPL065W // ensembl // 11 // --- --- No cerevisiae_gene 1.2802052203918 -1.13211736433268 1.29524608766145 -1.3960142838425 1.17185541633356 Max fold change below threshold 4 1.3960142838425 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775922_at YMR041C.S1 Hypothetical protein 1.39568403139712 1354.02508544922 1212.67102050781 --- --- --- --- 1187.82971191406 1354.55822753906 1353.49194335938 1237.51232910156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR041C /GEN=SUB1 /DB_XREF=GI:6323684 /SEG=NC_001145:-350965,351972 /DEF=Hypothetical ORF /NOTE=Ymr041cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004644 // YMR041C SGDID:S0004644, Chr XIII from 351972-350965, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018749 // cdna:Genscan chromosome:SGD1:XIII:350965:351972:-1 // ensembl // 11 // --- /// YMR041C // cdna:known chromosome:SGD1:XIII:350965:351972:-1 gene:YMR041C // ensembl // 11 // --- GENEFINDER00000022000 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.04746628838599 1.14036398816488 1.39568403139712 1.13946631388633 1.04182638023715 Max fold change below threshold 4 1.39568403139712 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771020_at YJL063C.S1 Mitochondrial ribosomal protein of the large subunit 1.39559719736031 870.209625244141 814.597442626953 MRPL8 2 // mitochondrial genome maintenance // inferred from mutant phenotype /// 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement /// 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // traceable author statement 780.270263671875 651.476257324219 1088.94299316406 848.924621582031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL063C /GEN=MRPL8 /DB_XREF=GI:6322398 /SEG=NC_001142:-315675,316391 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl8p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: mitochondrial genome maintenance [goid GO:0000002] [evidence IMP] [pmid 2183197]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0003599 // MRPL8 SGDID:S0003599, Chr X from 316391-315675, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024090 // cdna:Genscan chromosome:SGD1:X:315675:316391:-1 // ensembl // 11 // --- /// GENEFINDER00000024341 // cdna:GeneFinder chromosome:SGD1:X:315675:316391:-1 // ensembl // 11 // --- /// YJL063C // cdna:known chromosome:SGD1:X:315675:316391:-1 gene:YJL063C // ensembl // 11 // --- --- No cerevisiae_gene 1.18654612800365 -1.19769562574183 1.31798455375444 1.39559719736031 1.08798792047652 Max fold change below threshold 4 1.39559719736031 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779485_at YDR249C.S1 Hypothetical protein 1.39546993390393 630.102752685547 489.008911132813 --- --- --- --- 503.422210693359 557.694946289063 702.510559082031 474.595611572266 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR249C /GEN=VHS1 /DB_XREF=GI:6320455 /SEG=NC_001136:-958673,959794 /DEF=Hypothetical ORF /NOTE=Ydr249cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002657 // YDR249C SGDID:S0002657, Chr IV from 959796-958675, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YDR249C // cdna:known chromosome:SGD1:IV:958675:959796:-1 gene:YDR249C // ensembl // 11 // --- --- No cerevisiae_gene -1.08220751941574 1.10780759061257 -1.14424281327094 1.39546993390393 -1.06073928712825 Max fold change below threshold 4 1.39546993390393 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771499_at YNL111C.S1 Cytochrome b5, involved in the sterol and lipid biosynthesis pathways; required for sterol C5-6 and fatty acid desaturation 1.39523784241863 3842.16088867188 2932.22827148438 CYB5 16126 // sterol biosynthesis // inferred from direct assay /// 16126 // sterol biosynthesis // traceable author statement 5789 // endoplasmic reticulum membrane // inferred from direct assay /// 5792 // microsome // inferred from direct assay 5489 // electron transporter activity // traceable author statement 3011.97631835938 4202.42333984375 3481.8984375 2852.48022460938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL111C /GEN=CYB5 /DB_XREF=GI:6324218 /SEG=NC_001146:-416940,417302 /DEF=cytochrome b5 /NOTE=Cyb5p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 12514182]; go_component: microsome [goid GO:0005792] [evidence IDA] [pmid 10622712]; go_function: electron transporter activity [goid GO:0005489] [evidence TAS] [pmid 10622712]; go_process: sterol biosynthesis [goid GO:0016126] [evidence IDA,TAS] [pmid 10622712] --- --- --- --- --- S0005055 // span:98-117 // numtm:1 S0005055 // CYB5 SGDID:S0005055, Chr XIV from 417302-416940, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019944 // cdna:Genscan chromosome:SGD1:XIV:416940:417302:-1 // ensembl // 11 // --- /// GENEFINDER00000020617 // cdna:GeneFinder chromosome:SGD1:XIV:416940:417302:-1 // ensembl // 11 // --- /// YNL111C // cdna:known chromosome:SGD1:XIV:416940:417302:-1 gene:YNL111C // ensembl // 11 // --- --- No cerevisiae_gene 1.08522536375172 1.39523784241863 -1.14506073751161 1.15601786650055 -1.05591488150346 Max fold change below threshold 4 1.39523784241863 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774050_at YGL226C-A.S1 Zeta subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes asparagine-linked glycosylation of newly synthesized proteins 1.39513683499438 654.381988525391 860.678497314453 OST5 6487 // N-linked glycosylation // inferred from physical interaction 8250 // oligosaccharyl transferase complex // inferred from physical interaction 4579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from physical interaction 823.623168945313 590.352966308594 718.411010742188 897.733825683594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL226C-A /GEN=OST5 /DB_XREF=GI:6321211 /SEG=NC_001139:-72747,73156 /DEF=Zeta subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes aspargine-linked glycosylation of newly synthesized proteins /NOTE=Ost5p; go_component: oligosaccharyl transferase complex [goid GO:0008250] [evidence IPI] [pmid 10358084]; go_function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity [goid GO:0004579] [evidence IPI] [pmid 9405463]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IPI] [pmid 9405463] --- --- --- --- --- S0003194 // span:28-50,57-79 // numtm:2 S0003194 // OST5 SGDID:S0003194, Chr VII from 73157-73137,72987-72748, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YGL226C-A // cdna:known chromosome:SGD1:VII:72748:73157:-1 gene:YGL226C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.24174147758726 -1.39513683499438 1.06945102955764 -1.14645120499257 1.08998126756583 Max fold change below threshold 4 1.39513683499438 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771159_at YGL111W.S1 Constituent of 66S pre-ribosomal particles, involved in 60S ribosomal subunit biogenesis 1.39503167430462 610.357772827148 562.947723388672 NSA1 42273 // ribosomal large subunit biogenesis // inferred from mutant phenotype /// 42273 // ribosomal large subunit biogenesis // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 526.715576171875 485.930633544922 734.784912109375 599.179870605469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL111W /GEN=NSA1 /DB_XREF=GI:6321327 /SEG=NC_001139:+299979,301370 /DEF=Constituent of 66S pre-ribosomal particles, involved in 60S ribosomal subunit biogenesis /NOTE=Nsa1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ribosomal large subunit biogenesis [goid GO:0042273] [evidence IMP,IPI] [pmid 11583614] --- --- --- --- --- --- S0003079 // NSA1 SGDID:S0003079, Chr VII from 299981-301372, Verified ORF // sgd // 11 // --- /// GENSCAN00000019268 // cdna:Genscan chromosome:SGD1:VII:300128:301372:1 // ensembl // 11 // --- /// YGL111W // cdna:known chromosome:SGD1:VII:299981:301372:1 gene:YGL111W // ensembl // 11 // --- --- No cerevisiae_gene 1.10368346182745 -1.08393161453811 -1.00764752114409 1.39503167430462 1.13757765616171 Max fold change below threshold 4 1.39503167430462 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770129_at YNL032W.S1 Tyrosine phosphatase that plays a role in actin filament organization and endocytosis; localized to the cytoplasm 1.39484759764014 452.542739868164 549.791687011719 SIW14 6470 // protein amino acid dephosphorylation // inferred from sequence similarity /// 6897 // endocytosis // inferred from mutant phenotype /// 6950 // response to stress // inferred from genetic interaction /// 7015 // actin filament organization // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4725 // protein tyrosine phosphatase activity // inferred from sequence similarity 484.689331054688 411.418487548828 493.6669921875 614.89404296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL032W /GEN=SIW14 /DB_XREF=GI:6324296 /SEG=NC_001146:+574504,575349 /DEF=Synthetic interaction with Whi2 /NOTE=Siw14p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein tyrosine phosphatase activity [goid GO:0004725] [evidence ISS] [pmid 11967829]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence ISS] [pmid 11967829]; go_process: response to stress [goid GO:0006950] [evidence IGI] [pmid 10514564] --- --- --- --- --- --- S0004977 // SIW14 SGDID:S0004977, Chr XIV from 574505-575350, Verified ORF // sgd // 11 // --- /// GENSCAN00000020012 // cdna:Genscan chromosome:SGD1:XIV:574505:575350:1 // ensembl // 11 // --- /// YNL032W // cdna:known chromosome:SGD1:XIV:574505:575350:1 gene:YNL032W // ensembl // 11 // --- --- No cerevisiae_gene -1.21642449946938 -1.17809322070672 1.39484759764014 1.01852250618613 1.26863539915503 Max fold change below threshold 4 1.39484759764014 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779324_at YPR143W.S1 Nucleolar protein, constituent of pre-60S ribosomal particles; required for processing of the 27S pre-rRNA at the A2 site to yield 5.8S and 25S rRNA 1.39428233702008 785.562194824219 1036.93188476563 RRP15 30489 // processing of 27S pre-rRNA // inferred from mutant phenotype /// 30489 // processing of 27S pre-rRNA // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay --- 977.96923828125 869.710327148438 701.4140625 1095.89453125 0.000732421991415322 0.00122069998178631 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR143W /GEN=KAR3 /DB_XREF=GI:6325400 /SEG=NC_001148:+818317,819069 /DEF=Protein required for cell viability /NOTE=Ypr143wp; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006347 // YPR143W SGDID:S0006347, Chr XVI from 818319-819071, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017293 // cdna:Genscan chromosome:SGD1:XVI:818319:819071:1 // ensembl // 11 // --- /// GENEFINDER00000020887 // cdna:GeneFinder chromosome:SGD1:XVI:818319:819071:1 // ensembl // 11 // --- /// YPR143W // cdna:known chromosome:SGD1:XVI:818319:819071:1 gene:YPR143W // ensembl // 11 // --- M31719 // gb // 3 // Negative Strand Matching Probes /// YPR142C // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene 1.39312732508821 -1.12447697555549 1.02637606777437 -1.39428233702008 1.12058180191434 Max fold change below threshold 4 1.39428233702008 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773097_at YBR183W.S1 Alkaline ceramidase that also has reverse (CoA-independent) ceramide synthase activity, catalyzes both breakdown and synthesis of phytoceramide; overexpression confers fumonisin B1 resistance 1.39407180797179 5407.48217773438 5143.7705078125 YPC1 6672 // ceramide metabolism // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay 17040 // ceramidase activity // inferred from direct assay 5745.107421875 6685.8935546875 4129.07080078125 4542.43359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR183W /GEN=YPC1 /DB_XREF=GI:6319660 /SEG=NC_001134:+596072,597022 /DEF=Alkaline ceramidase that also has reverse (CoA-independent) ceramide synthase activity, catalyzes both breakdown and synthesis of phytoceramide; overexpression confers fumonisin B1 resistance /NOTE=Ypc1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 10900202]; go_function: ceramidase activity [goid GO:0017040] [evidence IDA] [pmid 10900202]; go_process: ceramide metabolism [goid GO:0006672] [evidence IMP] [pmid 10900202] --- --- --- --- --- S0000387 // span:69-88,134-156,163-185,200-222 // numtm:4 S0000387 // YPC1 SGDID:S0000387, Chr II from 596110-597060, Verified ORF // sgd // 11 // --- /// GENSCAN00000021288 // cdna:Genscan chromosome:SGD1:II:596110:597060:1 // ensembl // 11 // --- /// GENEFINDER00000022140 // cdna:GeneFinder chromosome:SGD1:II:596371:597060:1 // ensembl // 11 // --- /// YBR183W // cdna:known chromosome:SGD1:II:596110:597060:1 gene:YBR183W // ensembl // 11 // --- --- No cerevisiae_gene -1.39407180797179 1.16375431540764 -1.23872344941376 -1.39138021580739 -1.26476420696161 Max fold change below threshold 4 1.39407180797179 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771472_at YKL019W.S1 Alpha subunit of both the farnesyltransferase and type I geranylgeranyltransferase that catalyze prenylation of proteins containing a CAAX consensus motif; essential protein required for membrane localization of Ras proteins and a-factor 1.39363729860797 1216.32348632813 1493.64233398438 RAM2 7323 // peptide pheromone maturation // inferred from direct assay /// 18347 // protein amino acid farnesylation // inferred from direct assay /// 18348 // protein amino acid geranylgeranylation // inferred from direct assay 5953 // CAAX-protein geranylgeranyltransferase complex // inferred from direct assay /// 5965 // protein farnesyltransferase complex // inferred from direct assay 4660 // protein farnesyltransferase activity // inferred from direct assay /// 4661 // protein geranylgeranyltransferase activity // inferred from direct assay 1552.728515625 1114.15539550781 1318.49157714844 1434.55615234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL019W /GEN=RAM2 /DB_XREF=GI:6322833 /SEG=NC_001143:+402211,403161 /DEF=CAAX farnesyltransferase alpha subunit /NOTE=Ram2p; go_component: protein farnesyltransferase complex [goid GO:0005965] [evidence IDA] [pmid 1763050]; go_function: protein farnesyltransferase activity [goid GO:0004660] [evidence IDA] [pmid 1763050]; go_function: protein geranylgeranyltransferase activity [goid GO:0004661] [evidence IDA] [pmid 2034682]; go_process: peptide pheromone maturation [goid GO:0007323] [evidence IDA] [pmid 1763050]; go_process: protein amino acid farnesylation [goid GO:0018347] [evidence IDA] [pmid 7565716]; go_process: protein amino acid geranylgeranylation [goid GO:0018348] [evidence IDA] [pmid 2034682] --- --- --- --- --- --- S0001502 // RAM2 SGDID:S0001502, Chr XI from 402211-403161, Verified ORF // sgd // 11 // --- /// GENSCAN00000018403 // cdna:Genscan chromosome:SGD1:XI:402211:403161:1 // ensembl // 11 // --- /// GENEFINDER00000023090 // cdna:GeneFinder chromosome:SGD1:XI:402211:403161:1 // ensembl // 11 // --- /// YKL019W // cdna:known chromosome:SGD1:XI:402211:403161:1 gene:YKL019W // ensembl // 11 // --- --- No cerevisiae_gene -1.20664053217602 -1.39363729860797 -1.07296899993598 -1.17765524068281 -1.08237555782545 Max fold change below threshold 4 1.39363729860797 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771395_at YBR151W.S1 Protein of unknown function, required for normal localization of actin patches and for normal tolerance of sodium ions and hydrogen peroxide; localizes to both cytoplasm and nucleus 1.39338783336359 2835.64721679688 2306.20703125 APD1 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 2322.21655273438 3235.74829101563 2435.54614257813 2290.19750976563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR151W /GEN=APD1 /DB_XREF=GI:6319627 /SEG=NC_001134:+544984,545934 /DEF=Protein of unknown function, required for normal localization of actin patches and for normal tolerance of sodium ions and hydrogen peroxide; localizes to both cytoplasm and nucleus /NOTE=Apd1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000355 // APD1 SGDID:S0000355, Chr II from 545022-545972, Verified ORF // sgd // 11 // --- /// GENSCAN00000021260 // cdna:Genscan chromosome:SGD1:II:545022:545972:1 // ensembl // 11 // --- /// GENEFINDER00000022192 // cdna:GeneFinder chromosome:SGD1:II:545022:545972:1 // ensembl // 11 // --- /// YBR151W // cdna:known chromosome:SGD1:II:545022:545972:1 gene:YBR151W // ensembl // 11 // --- --- No cerevisiae_gene -1.07695585067044 1.39338783336359 1.17028755548766 1.04880233486851 -1.01398090899681 Max fold change below threshold 4 1.39338783336359 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770562_at YGR024C.S1 tRNAHis guanylyltransferase, adds a guanosine residue to the 5' end of tRNAHis after transcription and RNase P cleavage; couples nuclear division and migration to cell budding and cytokinesis; essential enzyme conserved among eukaryotes 1.39289893791709 1873.28930664063 1507.39324951172 THG1 6400 // tRNA modification // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8193 // tRNA guanylyltransferase activity // inferred from direct assay 1451.47741699219 2021.76135253906 1724.81726074219 1563.30908203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR024C /GEN=THG1 /DB_XREF=GI:6321461 /SEG=NC_001139:-531885,532598 /DEF=tRNAHis guanylyltransferase, adds a guanosine residue to the 5' end of tRNAHis after transcription and RNase P cleavage; essential enzyme conserved among eukaryotes /NOTE=Thg1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: tRNA guanylyltransferase activity [goid GO:0008193] [evidence IDA] [pmid 14633974]; go_process: tRNA modification [goid GO:0006400] [evidence IDA] [pmid 14633974] --- --- --- --- --- --- S0003256 // THG1 SGDID:S0003256, Chr VII from 532600-531887, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019358 // cdna:Genscan chromosome:SGD1:VII:531887:532600:-1 // ensembl // 11 // --- /// YGR024C // cdna:known chromosome:SGD1:VII:531887:532600:-1 gene:YGR024C // ensembl // 11 // --- --- No cerevisiae_gene 1.26220345766701 1.39289893791709 1.16787868435843 1.18831835793658 1.0770467826298 Max fold change below threshold 4 1.39289893791709 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770539_at YLR387C.S1 Protein of unknown function, similar to Rei1p but not involved in bud growth; contains dispersed C2H2 zinc finger domains 1.39273198393741 995.579467773438 892.288940429688 REH1 7117 // budding cell bud growth // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay --- 888.309814453125 753.9814453125 1237.17749023438 896.26806640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR387C /GEN=REH1 /DB_XREF=GI:6323419 /SEG=NC_001144:-896374,897672 /DEF=Protein of unknown function, similar to Rei1p but not involved in bud growth; contains dispersed C2H2 zinc finger domains /NOTE=Reh1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND]; go_process: bud growth [goid GO:0007117] [evidence IGI] [pmid 15107529] --- --- --- --- --- --- S0004379 // REH1 SGDID:S0004379, Chr XII from 897672-896374, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018111 // cdna:Genscan chromosome:SGD1:XII:896374:897672:-1 // ensembl // 10 // --- /// GENEFINDER00000024554 // cdna:GeneFinder chromosome:SGD1:XII:896374:897672:-1 // ensembl // 10 // --- /// YLR387C // cdna:known chromosome:SGD1:XII:896374:897672:-1 gene:YLR387C // ensembl // 10 // --- --- No cerevisiae_gene 1.09312131838329 -1.17815871992042 1.04203683808541 1.39273198393741 1.00895886978129 Max fold change below threshold 4 1.39273198393741 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774045_at YDR098C.S1 Hydroperoxide and superoxide-radical responsive glutathione-dependent oxidoreductase; monothiol glutaredoxin subfamily member along with Grx4p and Grx5p; protects cells from oxidative damage 1.39220155984023 1105.44708251953 1495.03411865234 GRX3 6979 // response to oxidative stress // inferred from mutant phenotype /// 6979 // response to oxidative stress // inferred from genetic interaction 5622 // intracellular // traceable author statement /// 5634 // nucleus // inferred from direct assay 30508 // thiol-disulfide exchange intermediate activity // inferred from mutant phenotype /// 30508 // thiol-disulfide exchange intermediate activity // inferred from sequence similarity /// 30508 // thiol-disulfide exchange intermediate activity // inferred from genetic interaction 1473.97912597656 1058.73974609375 1152.15441894531 1516.08911132813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR098C /GEN=GRX3 /DB_XREF=GI:6320303 /SEG=NC_001136:-644172,645029 /DEF=Hydroperoxide and superoxide-radical responsive glutathione-dependent oxidoreductase; monothiol glutaredoxin subfamily member along with Grx4p and Grx5p; protects cells from oxidative damage /NOTE=Grx3p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 11950925]; go_function: thiol-disulfide exchange intermediate activity [goid GO:0030508] [evidence IGI,IMP,ISS] [pmid 10567543]; go_process: response to oxidative stress [goid GO:0006979] [evidence IGI,IMP] [pmid 10567543] --- --- --- --- --- --- S0002505 // GRX3 SGDID:S0002505, Chr IV from 645030-644173, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023934 // cdna:GeneFinder chromosome:SGD1:IV:644173:644925:-1 // ensembl // 11 // --- /// GENSCAN00000025168 // cdna:Genscan chromosome:SGD1:IV:644173:644925:-1 // ensembl // 11 // --- /// YDR098C // cdna:known chromosome:SGD1:IV:644173:645030:-1 gene:YDR098C // ensembl // 11 // --- --- No cerevisiae_gene 1.15237257447036 -1.39220155984023 -1.14462414680508 -1.27932428304693 1.02856891567149 Max fold change below threshold 4 1.39220155984023 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769710_at YDR006C.S1 Protein whose overexpression suppresses the growth defect of mutants lacking protein kinase A activity; involved in cAMP-mediated signaling; localized to the nucleus; similar to the mouse testis-specific protein PBS13 1.39211693495884 2329.57727050781 2247.80834960938 SOK1 19933 // cAMP-mediated signaling // inferred from genetic interaction 5634 // nucleus // inferred from direct assay --- 2283.93334960938 2211.90795898438 2447.24658203125 2211.68334960938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR006C /GEN=SOK1 /DB_XREF=GI:6320209 /SEG=NC_001136:-458539,461244 /DEF=gene dosage suppressors of the conditional growth defect of several temperature-sensitive A kinase mutants /NOTE=Sok1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8065298]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cAMP-mediated signaling [goid GO:0019933] [evidence IGI] [pmid 8065298] --- --- --- --- --- --- S0002413 // SOK1 SGDID:S0002413, Chr IV from 461244-458539, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023893 // cdna:GeneFinder chromosome:SGD1:IV:458539:461244:-1 // ensembl // 11 // --- /// GENSCAN00000025104 // cdna:Genscan chromosome:SGD1:IV:458539:461244:-1 // ensembl // 11 // --- /// YDR006C // cdna:known chromosome:SGD1:IV:458539:461244:-1 gene:YDR006C // ensembl // 11 // --- --- No cerevisiae_gene -1.39211693495884 -1.03256256225873 -1.10840731608774 1.07150525318517 -1.03266742502391 Max fold change below threshold 4 1.39211693495884 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773839_at YPL175W.S1 UDP-GlcNAc-binding and catalytic subunit of the enzyme that mediates the first step in glycosylphosphatidylinositol (GPI) biosynthesis, mutations cause defects in transcription and in biogenesis of cell wall proteins 1.39124907645363 130.580574035645 112.593547821045 SPT14 6506 // GPI anchor biosynthesis // traceable author statement 506 // glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex // traceable author statement /// 5783 // endoplasmic reticulum // inferred from mutant phenotype 8194 // UDP-glycosyltransferase activity // inferred from physical interaction /// 8194 // UDP-glycosyltransferase activity // inferred from sequence similarity 109.840003967285 115.149032592773 146.012115478516 115.347091674805 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL175W /GEN=SPT14 /DB_XREF=GI:9755344 /SEG=NC_001148:+218629,220087 /DEF=UDP-GlcNAc-binding and catalytic subunit of the enzyme that mediates the first step in glycosylphosphatidylinositol (GPI) biosynthesis, mutations cause defects in transcription and in biogenesis of cell wall proteins /NOTE=Spt14p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IMP] [pmid 9079905]; go_function: transferase activity, transferring hexosyl groups [goid GO:0016758] [evidence IPI,ISS] [pmid 10970797]; go_process: GPI anchor biosynthesis [goid GO:0006506] [evidence TAS] [pmid 8806613] --- --- --- --- --- --- S0006096 // SPT14 SGDID:S0006096, Chr XVI from 218629-218645,218746-220087, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000017053 // cdna:Genscan chromosome:SGD1:XVI:218747:220087:1 // ensembl // 11 // --- /// GENEFINDER00000020929 // cdna:GeneFinder chromosome:SGD1:XVI:219479:220087:1 // ensembl // 11 // --- /// YPL175W // cdna:known chromosome:SGD1:XVI:218629:220087:1 gene:YPL175W // ensembl // 11 // --- --- No cerevisiae_gene 1.21740724371532 1.04833419914178 1.39124907645363 1.32931637112836 1.05013735896404 Max fold change below threshold 4 1.39124907645363 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770010_at YDL173W.S1 Hypothetical protein 1.39109310777896 2282.34338378906 2075.25653076172 --- --- 5737 // cytoplasm // inferred from direct assay --- 2141.73999023438 2350.12524414063 2214.5615234375 2008.77307128906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL173W /GEN=DLD1 /DB_XREF=GI:6320028 /SEG=NC_001136:+148192,149079 /DEF=Hypothetical ORF /NOTE=Ydl173wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002332 // YDL173W SGDID:S0002332, Chr IV from 148192-149079, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023920 // cdna:GeneFinder chromosome:SGD1:IV:148192:149079:1 // ensembl // 11 // --- /// YDL173W // cdna:known chromosome:SGD1:IV:148192:149079:1 gene:YDL173W // ensembl // 11 // --- YDL172C // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene -1.39109310777896 1.09729717652769 1.09744422584632 1.0340011082275 -1.06619310107537 Max fold change below threshold 4 1.39109310777896 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776449_at YOR208W.S1 Phosphotyrosine-specific protein phosphatase involved in the inactivation of mitogen-activated protein kinase (MAPK) during osmolarity sensing; dephosporylates Hog1p MAPK and regulates its localization; localized to the nucleus 1.39096735584061 2251.69152832031 1936.05157470703 PTP2 173 // inactivation of MAPK activity during osmolarity sensing // traceable author statement /// 750 // signal transduction during conjugation with cellular fusion // traceable author statement /// 6470 // protein amino acid dephosphorylation // traceable author statement /// 7231 // osmosensory signaling pathway // traceable author statement 5634 // nucleus // inferred from direct assay 4725 // protein tyrosine phosphatase activity // traceable author statement 1818.67199707031 2529.71337890625 1973.66967773438 2053.43115234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR208W /GEN=PTP2 /DB_XREF=GI:6324782 /SEG=NC_001147:+733925,736177 /DEF=protein tyrosine phosphatase /NOTE=Ptp2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10523653]; go_function: protein tyrosine phosphatase activity [goid GO:0004725] [evidence TAS] [pmid 8395005]; go_process: inactivation of MAPK during osmolarity sensing [goid GO:0000173] [evidence TAS] [pmid 10523653]; go_process: osmosensory signaling pathway [goid GO:0007231] [evidence TAS] [pmid 10523653]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence TAS] [pmid 8395005]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence TAS] [pmid 10523653] --- --- --- --- --- --- S0005734 // PTP2 SGDID:S0005734, Chr XV from 733925-736177, Verified ORF // sgd // 11 // --- /// GENSCAN00000017624 // cdna:Genscan chromosome:SGD1:XV:733925:736177:1 // ensembl // 11 // --- /// GENEFINDER00000022547 // cdna:GeneFinder chromosome:SGD1:XV:734732:736177:1 // ensembl // 11 // --- /// YOR208W // cdna:known chromosome:SGD1:XV:733925:736177:1 gene:YOR208W // ensembl // 11 // --- --- No cerevisiae_gene -1.32091514747492 1.39096735584061 1.09612753876029 1.085225747641 1.12908273490306 Max fold change below threshold 4 1.39096735584061 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774824_at YLR194C.S1 Hypothetical protein 1.39062812789805 2528.27355957031 2771.82482910156 --- --- 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 2935.72631835938 2668.23901367188 2388.30810546875 2607.92333984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR194C /GEN=HCR1 /DB_XREF=GI:6323223 /SEG=NC_001144:-540811,541575 /DEF=Hypothetical ORF /NOTE=Ylr194cp; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004184 // YLR194C SGDID:S0004184, Chr XII from 541575-540811, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017971 // cdna:Genscan chromosome:SGD1:XII:540811:541575:-1 // ensembl // 11 // --- /// GENEFINDER00000024902 // cdna:GeneFinder chromosome:SGD1:XII:540811:541575:-1 // ensembl // 11 // --- /// YLR194C // cdna:known chromosome:SGD1:XII:540811:541575:-1 gene:YLR194C // ensembl // 11 // --- --- No cerevisiae_gene 1.14306361013361 -1.10024862964559 -1.39062812789805 -1.22920753467157 -1.12569502082652 Max fold change below threshold 4 1.39062812789805 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779632_at YGL137W.S1 Essential beta'-coat protein of the COPI coatomer, involved in ER-to-Golgi and Golgi-to-ER transport; contains WD40 domains that mediate cargo selective interactions; 45% sequence identity to mammalian beta'-COP 1.39053419391926 1543.55255126953 1446.46215820313 SEC27 6888 // ER to Golgi transport // inferred from mutant phenotype /// 6890 // retrograde transport, Golgi to ER // inferred from mutant phenotype 30126 // COPI vesicle coat // inferred from sequence similarity /// 30126 // COPI vesicle coat // inferred from genetic interaction --- 1311.46643066406 1263.46618652344 1823.63891601563 1581.45788574219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL137W /GEN=SEC27 /DB_XREF=GI:6321301 /SEG=NC_001139:+249872,252741 /DEF=Involved in endoplasmic-to-Golgi protein trafficking /NOTE=Sec27p; go_component: COPI vesicle coat [goid GO:0030126] [evidence IGI,ISS] [pmid 7929113]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 7929113]; go_process: retrograde transport, Golgi to ER [goid GO:0006890] [evidence IMP] [pmid 8001155] --- --- --- --- --- --- S0003105 // SEC27 SGDID:S0003105, Chr VII from 249874-249891,250092-252743, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000019246 // cdna:Genscan chromosome:SGD1:VII:250503:252743:1 // ensembl // 11 // --- /// GENEFINDER00000021628 // cdna:GeneFinder chromosome:SGD1:VII:250503:252743:1 // ensembl // 11 // --- /// YGL137W // cdna:known chromosome:SGD1:VII:249874:252743:1 gene:YGL137W // ensembl // 11 // --- --- No cerevisiae_gene 1.25082670663366 -1.03799092104926 1.2698942703485 1.39053419391926 1.20586989400973 Max fold change below threshold 4 1.39053419391926 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776576_at YKL093W.S1 Protein involved in mitochondrial functions and stress response; overexpression suppresses growth defects of hap2, hap3, and hap4 mutants 1.39041397169907 4264.52575683594 3245.20837402344 MBR1 9060 // aerobic respiration // inferred from mutant phenotype --- --- 3344.06469726563 4649.63427734375 3879.41723632813 3146.35205078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL093W /GEN=MBR1 /DB_XREF=GI:6322757 /SEG=NC_001143:+264434,265453 /DEF=Involved in mitochondrial biogenesis /NOTE=Mbr1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 8208248] --- --- --- --- --- --- S0001576 // MBR1 SGDID:S0001576, Chr XI from 264434-265453, Verified ORF // sgd // 11 // --- /// GENSCAN00000018347 // cdna:Genscan chromosome:SGD1:XI:264434:265453:1 // ensembl // 11 // --- /// GENEFINDER00000023017 // cdna:GeneFinder chromosome:SGD1:XI:264434:265453:1 // ensembl // 11 // --- /// YKL093W // cdna:known chromosome:SGD1:XI:264434:265453:1 gene:YKL093W // ensembl // 11 // --- --- No cerevisiae_gene -1.32888663246063 1.39041397169907 1.02090128929893 1.16009036532704 -1.06283869169545 Max fold change below threshold 4 1.39041397169907 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776077_at YIL137C.S1 Putative metalloprotease 1.39011884015968 795.307678222656 699.408416748047 --- 6508 // proteolysis and peptidolysis // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay 4222 // metalloendopeptidase activity // inferred from sequence similarity 650.32861328125 686.581298828125 904.034057617188 748.488220214844 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL137C /GEN=TPM2 /DB_XREF=GI:6322054 /SEG=NC_001141:-89948,92788 /DEF=Hypothetical ORF /NOTE=Yil137cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001399 // YIL137C SGDID:S0001399, Chr IX from 92788-89948, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016372 // cdna:Genscan chromosome:SGD1:IX:89948:92788:-1 // ensembl // 11 // --- /// GENEFINDER00000019144 // cdna:GeneFinder chromosome:SGD1:IX:89948:92788:-1 // ensembl // 11 // --- /// YIL137C // cdna:known chromosome:SGD1:IX:89948:92788:-1 gene:YIL137C // ensembl // 11 // --- --- No cerevisiae_gene -1.27695828678561 1.05574517990829 1.03136072283168 1.39011884015968 1.15093847161103 Max fold change below threshold 4 1.39011884015968 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769783_at YGR279C.S1 Cell wall protein with similarity to glucanases; scw4 scw10 double mutants exhibit defects in mating 1.39007029979764 8538.01538085938 6488.23828125 SCW4 747 // conjugation with cellular fusion // inferred from genetic interaction 9277 // cell wall (sensu Fungi) // inferred from direct assay 15926 // glucosidase activity // inferred from sequence similarity 7346.8828125 10212.68359375 6863.34716796875 5629.59375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR279C /GEN=SCW4 /DB_XREF=GI:6321718 /SEG=NC_001139:-1048803,1049963 /DEF=Soluble Cell Wall protein /NOTE=Scw4p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 9748433]; go_function: glucosidase activity [goid GO:0015926] [evidence ISS] [pmid 9748433]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IGI] [pmid 9748433] --- --- --- --- --- --- S0003511 // SCW4 SGDID:S0003511, Chr VII from 1049964-1048804, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019556 // cdna:Genscan chromosome:SGD1:VII:1048804:1049964:-1 // ensembl // 11 // --- /// GENEFINDER00000021747 // cdna:GeneFinder chromosome:SGD1:VII:1048804:1049964:-1 // ensembl // 11 // --- /// YGR279C // cdna:known chromosome:SGD1:VII:1048804:1049964:-1 gene:YGR279C // ensembl // 11 // --- --- No cerevisiae_gene -1.20189505316357 1.39007029979764 -1.26721270014202 -1.07045187030432 -1.30504671185199 Max fold change below threshold 4 1.39007029979764 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777720_at YER094C.S1 Beta subunit of the 20S proteasome involved in ubiquitin-dependent catabolism; human homolog is subunit C10 1.38984584793006 3059.30883789063 2277.20446777344 PUP3 6511 // ubiquitin-dependent protein catabolism // traceable author statement 19774 // proteasome core complex, beta-subunit complex (sensu Eukaryota) // traceable author statement /// 19774 // proteasome core complex, beta-subunit complex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement 2397.6298828125 2786.28173828125 3332.3359375 2156.77905273438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER094C /GEN=PUP3 /DB_XREF=GI:6320941 /SEG=NC_001137:-348725,349342 /DEF=20S proteasome subunit beta3_sc /NOTE=Pup3p; go_component: proteasome core complex (sensu Eukarya) [goid GO:0005839] [evidence TAS] [pmid 10872471]; go_component: proteasome core complex, beta-subunit complex (sensu Eukarya) [goid GO:0019774] [evidence TAS] [pmid 10500111]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 10872471]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10872471] --- --- --- --- --- --- S0000896 // PUP3 SGDID:S0000896, Chr V from 349342-348725, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016881 // cdna:Genscan chromosome:SGD1:V:348725:349300:-1 // ensembl // 11 // --- /// GENEFINDER00000019612 // cdna:GeneFinder chromosome:SGD1:V:348725:349300:-1 // ensembl // 11 // --- /// YER094C // cdna:known chromosome:SGD1:V:348725:349342:-1 gene:YER094C // ensembl // 11 // --- --- No cerevisiae_gene 1.03409698624089 1.16209835315067 1.20584486307075 1.38984584793006 -1.11167153620709 Max fold change below threshold 4 1.38984584793006 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775764_at YBL055C.S1 Hypothetical protein 1.38932976003403 613.698028564453 505.651992797852 --- --- 5737 // cytoplasm // inferred from direct assay --- 486.851104736328 550.999328613281 676.396728515625 524.452880859375 0.000244141003349796 0.00122069998178631 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL055C /GEN=PTC3 /DB_XREF=GI:6319416 /SEG=NC_001134:-115538,116794 /DEF=Hypothetical ORF /NOTE=Ybl055cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000151 // YBL055C SGDID:S0000151, Chr II from 116832-115576, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000021095 // cdna:Genscan chromosome:SGD1:II:115576:116754:-1 // ensembl // 10 // --- /// GENEFINDER00000022332 // cdna:GeneFinder chromosome:SGD1:II:115576:116754:-1 // ensembl // 10 // --- /// YBL055C // cdna:known chromosome:SGD1:II:115576:116832:-1 gene:YBL055C // ensembl // 10 // --- --- No cerevisiae_gene -1.14566092103223 1.13176148365052 1.25911812830292 1.38932976003403 1.07723465297139 Max fold change below threshold 4 1.38932976003403 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774110_at YPL228W.S1 Interacts with Ceg1p, the mRNA capping enzyme alpha subunit; removes gamma-phosphate from triphosphate-terminated RNA; mRNA capping enzyme beta subunit (80 kDa), RNA 5'-triphosphatase 1.38874225895128 476.74333190918 666.058288574219 CET1 6370 // mRNA capping // traceable author statement 5634 // nucleus // inferred from physical interaction 4651 // polynucleotide 5'-phosphatase activity // traceable author statement 602.363098144531 519.739440917969 433.747222900391 729.753479003906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL228W /GEN=CET1 /DB_XREF=GI:6325028 /SEG=NC_001148:+118382,120031 /DEF=Interacts with Ceg1p, the mRNA capping enzyme alpha subunit; removes gamma-phosphate from triphosphate-terminated RNA /NOTE=Cet1p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 9832501]; go_function: polynucleotide 5'-phosphatase activity [goid GO:0004651] [evidence TAS] [pmid 11463793]; go_process: mRNA capping [goid GO:0006370] [evidence TAS] [pmid 11463793] --- --- --- --- --- --- S0006149 // CET1 SGDID:S0006149, Chr XVI from 118382-120031, Verified ORF // sgd // 11 // --- /// GENSCAN00000017010 // cdna:Genscan chromosome:SGD1:XVI:118382:120031:1 // ensembl // 11 // --- /// GENEFINDER00000021031 // cdna:GeneFinder chromosome:SGD1:XVI:118382:120031:1 // ensembl // 11 // --- /// YPL228W // cdna:known chromosome:SGD1:XVI:118382:120031:1 gene:YPL228W // ensembl // 11 // --- --- No cerevisiae_gene 1.15998928779545 -1.15897130508439 -1.04602863597957 -1.38874225895128 1.21148437089154 Max fold change below threshold 4 1.38874225895128 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771508_at YGL168W.S1 Protein required for hydroxyurea resistance; has a possible role in DNA replication 1.38868300319896 142.933856964111 160.544075012207 HUR1 6260 // DNA replication // inferred from mutant phenotype --- --- 161.414703369141 169.631896972656 116.235816955566 159.673446655273 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL168W /GEN=HUR1 /DB_XREF=GI:6321270 /SEG=NC_001139:+187468,187800 /DEF=Protein required for hydroxyurea resistance; functions in DNA replication /NOTE=Hur1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA replication [goid GO:0006260] [evidence IMP] [pmid 12615994] --- --- --- --- --- S0003136 // span:10-32 // numtm:1 S0003136 // HUR1 SGDID:S0003136, Chr VII from 187470-187802, Verified ORF // sgd // 11 // --- /// YGL168W // cdna:known chromosome:SGD1:VII:187470:187802:1 gene:YGL168W // ensembl // 11 // --- S0003135 // sgd // 7 // Negative Strand Matching Probes /// GENSCAN00000019223 // ensembl // 7 // Negative Strand Matching Probes /// GENEFINDER00000021431 // ensembl // 7 // Negative Strand Matching Probes /// YGL167C // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene -1.14012620366411 1.05090734259025 -1.25070172951601 -1.38868300319896 -1.01090511134031 Max fold change below threshold 4 1.38868300319896 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779460_at YNL079C.S1 Major isoform of tropomyosin; binds to and stabilizes actin cables and filaments, which direct polarized cell growth and the distribution of several organelles; acetylated by the NatB complex and acetylated form binds actin most efficiently 1.38855420326324 2757.83129882813 1971.27740478516 TPM1 1 // mitochondrion inheritance // traceable author statement /// 11 // vacuole inheritance // traceable author statement /// 6887 // exocytosis // traceable author statement /// 7015 // actin filament organization // inferred from physical interaction /// 7118 // budding cell apical bud growth // inferred from mutant phenotype /// 7118 // budding cell apical bud growth // inferred from genetic interaction /// 7118 // budding cell apical bud growth // inferred from physical interaction /// 7119 // budding cell isotropic bud growth // inferred from mutant phenotype /// 7119 // budding cell isotropic bud growth // inferred from genetic interaction /// 7119 // budding cell isotropic bud growth // inferred from physical interaction /// 8154 // actin polymerization and/or depolymerization // inferred from genetic interaction /// 8154 // actin polymerization and/or depolymerization // inferred from physical interaction /// 8154 // actin polymerization and/or depolymerization // inferred from mutant phenotype /// 8298 // intracellular mRNA localization // traceable author statement /// 16192 // vesicle-mediated transport // traceable author statement /// 30447 // filamentous growth // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from genetic interaction /// 45011 // actin cable formation // inferred from genetic interaction 142 // contractile ring (sensu Saccharomyces) // inferred from direct assay /// 30482 // actin cable // inferred from direct assay 3786 // actin lateral binding // traceable author statement 2108.10620117188 2927.2197265625 2588.44287109375 1834.44860839844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL079C /GEN=TPM1 /DB_XREF=GI:6324250 /SEG=NC_001146:-478565,479164 /DEF=Actin-binding protein that stabilizes actin filaments; Tpm1, the main tropomyosin, is required for the formation and stability of actin cables in vivo which direct polarized cell growth and the distribution of several organelles. /NOTE=Tpm1p; go_component: actin cable (sensu Fungi) [goid GO:0030482] [evidence IDA] [pmid 9864365]; go_component: contractile ring (sensu Saccharomyces) [goid GO:0000142] [evidence IDA] [pmid 9864365]; go_function: actin lateral binding [goid GO:0003786] [evidence TAS] [pmid 9153752]; go_process: actin cable formation [goid GO:0045011] [evidence IGI] [pmid 9864365]; go_process: actin filament organization [goid GO:0007015] [evidence IPI] [pmid 10652251]; go_process: actin polymerization and/or depolymerization [goid GO:0008154] [evidence IGI,IMP,IPI] [pmid 10652251]; go_process: apical bud growth [goid GO:0007118] [evidence IGI,IMP,IPI] [pmid 10652251]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IGI,IMP,IPI] [pmid 10652251]; go_process: exocytosis [goid GO:0006887] [evidence TAS] [pmid 10652251]; go_process: isotropic bud growth [goid GO:0007119] [evidence IGI,IMP,IPI] [pmid 10652251]; go_process: mRNA localization, intracellular [goid GO:0008298] [evidence TAS] [pmid 10652251]; go_process: mitochondrion inheritance [goid GO:0000001] [evidence TAS] [pmid 10652251]; go_process: vacuole inheritance [goid GO:0000011] [evidence TAS] [pmid 10652251]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence TAS] [pmid 10652251] --- --- --- --- --- --- S0005023 // TPM1 SGDID:S0005023, Chr XIV from 479164-478565, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019968 // cdna:Genscan chromosome:SGD1:XIV:478565:479164:-1 // ensembl // 11 // --- /// GENEFINDER00000020629 // cdna:GeneFinder chromosome:SGD1:XIV:478565:479164:-1 // ensembl // 11 // --- /// YNL079C // cdna:known chromosome:SGD1:XIV:478565:479164:-1 gene:YNL079C // ensembl // 11 // --- --- No cerevisiae_gene 1.05625756603828 1.38855420326324 -1.363416605751 1.22785221619995 -1.149177028738 Max fold change below threshold 4 1.38855420326324 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780038_at YKL065C.S1 Endoplasmic reticulum transmembrane protein, homolog of human BAP31 protein 1.38826947224145 4717.36071777344 3726.80139160156 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 4141.02978515625 5748.865234375 3685.85620117188 3312.57299804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL065C /GEN=YNK1 /DB_XREF=GI:6322785 /SEG=NC_001143:-316082,316702 /DEF=Endoplasmic reticulum transmembrane protein, homolog of human BAP31 protein /NOTE=Ykl065cp --- --- --- --- scop // a.2.7.Seryl-tRNA synthetase (SerRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) // 1.70000004768372 S0001548 // span:4-26,47-66,106-125 // numtm:3 S0001548 // YET1 SGDID:S0001548, Chr XI from 316702-316082, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018369 // cdna:Genscan chromosome:SGD1:XI:316082:316651:-1 // ensembl // 10 // --- /// YKL065C // cdna:known chromosome:SGD1:XI:316082:316702:-1 gene:YKL065C // ensembl // 11 // --- --- No cerevisiae_gene -1.16659372729672 1.38826947224145 -1.1572113795429 -1.12349195387483 -1.25009465077384 Max fold change below threshold 4 1.38826947224145 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777004_at YLR455W.S1 Hypothetical protein 1.38803116129407 896.679626464844 774.269592285156 --- --- 5634 // nucleus // inferred from direct assay --- 724.400024414063 1005.48980712891 787.869445800781 824.13916015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR455W /GEN=RIF2 /DB_XREF=GI:6323488 /SEG=NC_001144:+1053626,1054540 /DEF=Hypothetical ORF /NOTE=Ylr455wp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004447 // YLR455W SGDID:S0004447, Chr XII from 1053626-1054540, Uncharacterized ORF // sgd // 11 // --- /// YLR455W // cdna:known chromosome:SGD1:XII:1053626:1054540:1 gene:YLR455W // ensembl // 11 // --- --- No cerevisiae_gene -1.24029381889319 1.38803116129407 1.21609924363255 1.08761653678581 1.13768516341901 Max fold change below threshold 4 1.38803116129407 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777111_at YNL004W.S1 Poly(A+) RNA-binding protein, involved in the export of mRNAs from the nucleus to the cytoplasm; similar to Gbp2p and Npl3p 1.38775915837987 1585.21435546875 1257.15655517578 HRB1 16973 // poly(A)+ mRNA-nucleus export // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 30530 // heterogeneous nuclear ribonucleoprotein complex // inferred from sequence similarity /// 30530 // heterogeneous nuclear ribonucleoprotein complex // non-traceable author statement 3723 // RNA binding // inferred from direct assay 1215.41760253906 1483.72180175781 1686.70690917969 1298.8955078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL004W /GEN=HRB1 /DB_XREF=GI:6324324 /SEG=NC_001146:+623331,624620 /DEF=Poly(A+) RNA-binding protein, involved in the export of mRNAs from the nucleus to the cytoplasm; similar to Gbp2p and Npl3p /NOTE=Hrb1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9499403]; go_component: heterogeneous nuclear ribonucleoprotein complex [goid GO:0030530] [evidence ISS,NAS] [pmid 9499403]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9499403]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 76199]; go_process: poly(A)+ mRNA-nucleus export [goid GO:0016973] [evidence IPI] [pmid 14769921] --- --- --- --- --- --- S0004949 // HRB1 SGDID:S0004949, Chr XIV from 623332-624621, Verified ORF // sgd // 11 // --- /// GENSCAN00000020035 // cdna:Genscan chromosome:SGD1:XIV:623332:624621:1 // ensembl // 11 // --- /// GENEFINDER00000020455 // cdna:GeneFinder chromosome:SGD1:XIV:623332:624621:1 // ensembl // 11 // --- /// YNL004W // cdna:known chromosome:SGD1:XIV:623332:624621:1 gene:YNL004W // ensembl // 11 // --- --- No cerevisiae_gene 1.285896905009 1.2207506281448 1.18096435757185 1.38775915837987 1.06868248830612 Max fold change below threshold 4 1.38775915837987 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775066_at YOR173W.S1 Non-essential protein containing a HIT (histidine triad) motif; regulated by Msn2p, Msn4p, and the Ras-cAMP-cAPK signaling pathway, transcript accumulates under glucose limitation, similar to Dcs1p 1.38771902738746 5471.10815429688 4047.88818359375 DCS2 --- 5737 // cytoplasm // inferred from direct assay --- 4497.310546875 6241.00341796875 4701.212890625 3598.4658203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR173W /GEN=DCS2 /DB_XREF=GI:6324747 /SEG=NC_001147:+657132,658325 /DEF=Non-essential protein containing a HIT (histidine triad) motif; regulated by Msn2p, Msn4p, and the Ras-cAMP-cAPK signalling pathway, transcript accumulates under glucose limitation, similar to Dcs1p /NOTE=Dcs2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005699 // DCS2 SGDID:S0005699, Chr XV from 657132-658325, Verified ORF // sgd // 11 // --- /// GENSCAN00000017593 // cdna:Genscan chromosome:SGD1:XV:657132:658325:1 // ensembl // 11 // --- /// GENEFINDER00000022559 // cdna:GeneFinder chromosome:SGD1:XV:657264:658325:1 // ensembl // 11 // --- /// YOR173W // cdna:known chromosome:SGD1:XV:657132:658325:1 gene:YOR173W // ensembl // 11 // --- --- No cerevisiae_gene -1.27728678285426 1.38771902738746 -1.21989393714637 1.04533872891915 -1.24978553957321 Max fold change below threshold 4 1.38771902738746 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777391_at YBR035C.S1 Pyridoxine (pyridoxamine) phosphate oxidase, has homologs in E. coli and Myxococcus xanthus; transcription is under the general control of nitrogen metabolism 1.3869283471004 2275.59936523438 1780.03875732422 PDX3 6631 // fatty acid metabolism // inferred from mutant phenotype --- 4733 // pyridoxamine-phosphate oxidase activity // inferred from sequence similarity /// 4733 // pyridoxamine-phosphate oxidase activity // inferred from mutant phenotype 1797.51440429688 2058.17504882813 2493.02368164063 1762.56311035156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR035C /GEN=PDX3 /DB_XREF=GI:6319509 /SEG=NC_001134:-306231,306917 /DEF=pyridoxine (pyridoxiamine) phosphate oxidase /NOTE=Pdx3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: pyridoxamine-phosphate oxidase activity [goid GO:0004733] [evidence IMP,ISS] [pmid 7896706]; go_process: fatty acid metabolism [goid GO:0006631] [evidence IMP] [pmid 7896706] --- --- --- --- --- --- S0000239 // PDX3 SGDID:S0000239, Chr II from 306955-306269, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021167 // cdna:Genscan chromosome:SGD1:II:306269:306955:-1 // ensembl // 11 // --- /// GENEFINDER00000022288 // cdna:GeneFinder chromosome:SGD1:II:306269:306955:-1 // ensembl // 11 // --- /// YBR035C // cdna:known chromosome:SGD1:II:306269:306955:-1 gene:YBR035C // ensembl // 11 // --- --- No cerevisiae_gene 1.00895014396372 1.14501171390235 1.14157733817273 1.3869283471004 -1.01982981133557 Max fold change below threshold 4 1.3869283471004 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771505_at YCR090C.S1 Hypothetical protein 1.3868358625378 468.097946166992 431.096237182617 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 387.864074707031 433.847076416016 502.348815917969 474.328399658203 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR090C /GEN=FIG2 /DB_XREF=GI:6319933 /SEG=NC_001135:-272311,272859 /DEF=Hypothetical ORF /NOTE=Ycr090cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000686 // YCR090C SGDID:S0000686, Chr III from 272859-272311, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YCR090C // cdna:known chromosome:SGD1:III:272311:272859:-1 gene:YCR090C // ensembl // 11 // --- --- No cerevisiae_gene 1.3868358625378 1.1185544233343 1.32652316804791 1.2951671698324 1.22292429381732 Max fold change below threshold 4 1.3868358625378 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774641_at YLL036C.S1 Splicing factor associated with the spliceosome; contains a U-box, a motif found in a class of ubiquitin ligases 1.38664133926404 511.721649169922 679.825439453125 PRP19 398 // nuclear mRNA splicing, via spliceosome // inferred from genetic interaction /// 398 // nuclear mRNA splicing, via spliceosome // inferred from mutant phenotype /// 398 // nuclear mRNA splicing, via spliceosome // inferred from direct assay /// 6511 // ubiquitin-dependent protein catabolism // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5681 // spliceosome complex // inferred from direct assay /// 5681 // spliceosome complex // inferred from genetic interaction /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 31202 // RNA splicing factor activity, transesterification mechanism // inferred from direct assay /// 31202 // RNA splicing factor activity, transesterification mechanism // inferred from mutant phenotype 670.501770019531 498.499084472656 524.944213867188 689.149108886719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL036C /GEN=PRP19 /DB_XREF=GI:6322992 /SEG=NC_001144:-66744,68255 /DEF=Splicing factor associated with the spliceosome; contains a U-box, a motif found in a class of ubiquitin ligases /NOTE=Prp19p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_component: spliceosome complex [goid GO:0005681] [evidence IDA,IGI] [pmid 11018040]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IDA] [pmid 10092627]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IDA,IGI] [pmid 11018040] --- --- --- --- --- --- S0003959 // PRP19 SGDID:S0003959, Chr XII from 68255-66744, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017682 // cdna:Genscan chromosome:SGD1:XII:66744:68255:-1 // ensembl // 11 // --- /// GENEFINDER00000024569 // cdna:GeneFinder chromosome:SGD1:XII:66744:67982:-1 // ensembl // 11 // --- /// YLL036C // cdna:known chromosome:SGD1:XII:66744:68255:-1 gene:YLL036C // ensembl // 11 // --- YLL037W // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene -1.38664133926404 -1.34504112626171 1.14090126613251 -1.27728195169548 1.02781102109044 Max fold change below threshold 4 1.38664133926404 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775526_at YGR155W.S1 Cystathionine beta-synthase, catalyzes the synthesis of cystathionine from serine and homocysteine, the first committed step in cysteine biosynthesis 1.3865903609272 2912.62890625 2506.99914550781 CYS4 19344 // cysteine biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4122 // cystathionine beta-synthase activity // inferred from direct assay 2541.08984375 2952.1513671875 2873.1064453125 2472.90844726563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR155W /GEN=CYS4 /DB_XREF=GI:6321594 /SEG=NC_001139:+798546,800069 /DEF=encodes the first enzyme in cysteine biosynthesis. catalyzes the first committed step of transsulfuration. /NOTE=Cys4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: cystathionine beta-synthase activity [goid GO:0004122] [evidence IDA] [pmid 10766767]; go_process: cysteine biosynthesis [goid GO:0019344] [evidence IMP] [pmid 8366024] --- --- --- --- --- --- S0003387 // CYS4 SGDID:S0003387, Chr VII from 798548-800071, Verified ORF // sgd // 11 // --- /// GENSCAN00000019459 // cdna:Genscan chromosome:SGD1:VII:798548:800071:1 // ensembl // 11 // --- /// GENEFINDER00000021531 // cdna:GeneFinder chromosome:SGD1:VII:798548:800071:1 // ensembl // 11 // --- /// YGR155W // cdna:known chromosome:SGD1:VII:798548:800071:1 gene:YGR155W // ensembl // 11 // --- --- No cerevisiae_gene 1.3865903609272 1.16176583620156 -1.11289455118877 1.13065913524432 -1.02757133874477 Max fold change below threshold 4 1.3865903609272 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769779_at YCR088W.S1 Actin-binding protein of the cortical actin cytoskeleton, important for activation of the Arp2/3 complex that plays a key role actin in cytoskeleton organization 1.38645536895393 1425.544921875 1300.73333740234 ABP1 147 // actin cortical patch assembly // inferred from mutant phenotype /// 30447 // filamentous growth // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5856 // cytoskeleton // traceable author statement /// 5938 // cell cortex // inferred from direct assay 5515 // protein binding // inferred from direct assay 1254.71691894531 1111.48083496094 1739.60900878906 1346.74975585938 0.00805663969367743 0.00805663969367743 0.00585938012227416 0.00585938012227416 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR088W /GEN=ABP1 /DB_XREF=GI:6319931 /SEG=NC_001135:+265064,266842 /DEF=Actin-binding protein of the cortical actin cytoskeleton, important for activation of the Arp2/3 complex that plays a key role actin in cytoskeleton organization /NOTE=Abp1p; go_component: cell cortex [goid GO:0005938] [evidence IDA] [pmid 11950888]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytoskeleton [goid GO:0005856] [evidence TAS] [pmid 2405279]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 11668184]; go_process: actin cortical patch assembly [goid GO:0000147] [evidence IMP] [pmid 2405279]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IMP] [pmid 2405279] --- --- --- --- --- --- S0000684 // ABP1 SGDID:S0000684, Chr III from 265064-266842, Verified ORF // sgd // 11 // --- /// GENSCAN00000022520 // cdna:Genscan chromosome:SGD1:III:265064:266842:1 // ensembl // 11 // --- /// GENEFINDER00000023401 // cdna:GeneFinder chromosome:SGD1:III:265064:266842:1 // ensembl // 11 // --- /// YCR088W // cdna:known chromosome:SGD1:III:265064:266842:1 gene:YCR088W // ensembl // 11 // --- --- No cerevisiae_gene -1.09778803844518 -1.12886959403975 1.26033976670651 1.38645536895393 1.07334948267967 Max fold change below threshold 4 1.38645536895393 Max fold change below threshold PPPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1773128_at YNL229C.S1 Nitrogen catabolite repression regulator that acts by inhibition of GLN3 transcription in good nitrogen source; altered form of Ure2p creates [URE3] prion 1.38640129487385 939.185607910156 1197.16461181641 URE2 6808 // regulation of nitrogen utilization // inferred from physical interaction /// 6808 // regulation of nitrogen utilization // inferred from genetic interaction /// 6808 // regulation of nitrogen utilization // inferred from mutant phenotype /// 10044 // response to aluminum ion // inferred from mutant phenotype 5625 // soluble fraction // inferred from direct assay 3714 // transcription corepressor activity // inferred from physical interaction /// 3714 // transcription corepressor activity // inferred from genetic interaction 1164.0556640625 839.623901367188 1038.74731445313 1230.27355957031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL229C /GEN=URE2 /DB_XREF=GI:6324100 /SEG=NC_001146:-219136,220200 /DEF=Nitrogen catabolite repression regulator that acts by inhibition of GLN3 in good nitrogen source. Altered form of Ure2p creates [URE3] prion. /NOTE=Ure2p; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 10224139]; go_function: transcription corepressor activity [goid GO:0003714] [evidence IGI,IPI] [pmid 8755910]; go_process: regulation of nitrogen utilization [goid GO:0006808] [evidence IMP] [pmid 8002570]; go_process: regulation of nitrogen utilization [goid GO:0006808] [evidence IGI,IPI] [pmid 8755910] --- --- --- --- --- --- S0005173 // URE2 SGDID:S0005173, Chr XIV from 220200-219136, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019857 // cdna:Genscan chromosome:SGD1:XIV:219136:219921:-1 // ensembl // 11 // --- /// YNL229C // cdna:known chromosome:SGD1:XIV:219136:220200:-1 gene:YNL229C // ensembl // 11 // --- GENEFINDER00000020540 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 1.17833735181331 -1.38640129487385 1.11036442747566 -1.12063410212073 1.05688550603905 Max fold change below threshold 4 1.38640129487385 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775958_at YGL043W.S1 General transcription elongation factor TFIIS, enables RNA polymerase II to read through blocks to elongation by stimulating cleavage of nascent transcripts stalled at transcription arrest sites 1.38619715595964 650.723693847656 743.439147949219 DST1 6368 // RNA elongation from RNA polymerase II promoter // inferred from direct assay /// 6379 // mRNA cleavage // traceable author statement /// 6379 // mRNA cleavage // inferred from direct assay /// 7131 // meiotic recombination // inferred from mutant phenotype 5654 // nucleoplasm // inferred from physical interaction 8159 // positive transcription elongation factor activity // inferred from direct assay 720.94287109375 604.29345703125 697.153930664063 765.935424804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL043W /GEN=DST1 /DB_XREF=GI:6321395 /SEG=NC_001139:+417485,418414 /DEF=General transcription elongation factor TFIIS, enables RNA polymerase II to read through blocks to elongation by stimulating cleavage of nascent transcripts stalled at transcription arrest sites /NOTE=Dst1p; go_component: nucleoplasm [goid GO:0005654] [evidence IPI] [pmid 9334234]; go_function: positive transcription elongation factor activity [goid GO:0008159] [evidence IDA] [pmid 9334234]; go_process: RNA elongation from Pol II promoter [goid GO:0006368] [evidence IDA] [pmid 9334234]; go_process: meiotic recombination [goid GO:0007131] [evidence IMP] [pmid 1850099] --- --- --- --- --- --- S0003011 // DST1 SGDID:S0003011, Chr VII from 417487-418416, Verified ORF // sgd // 11 // --- /// GENSCAN00000019312 // cdna:Genscan chromosome:SGD1:VII:417487:418416:1 // ensembl // 11 // --- /// GENEFINDER00000021476 // cdna:GeneFinder chromosome:SGD1:VII:417487:418673:1 // ensembl // 9 // --- /// YGL043W // cdna:known chromosome:SGD1:VII:417487:418416:1 gene:YGL043W // ensembl // 11 // --- YGL042C // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene 1.38619715595964 -1.1930343820626 -1.09755892004822 -1.03412293811071 1.0624079320497 Max fold change below threshold 4 1.38619715595964 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778711_at YER152C.S1 Hypothetical protein 1.38599791767747 891.907287597656 933.524230957031 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 916.583923339844 744.881958007813 1038.9326171875 950.464538574219 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER152C /GEN=UBP3 /DB_XREF=GI:6321000 /SEG=NC_001137:-472652,473983 /DEF=Hypothetical ORF /NOTE=Yer152cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000954 // YER152C SGDID:S0000954, Chr V from 473983-472652, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000019724 // cdna:GeneFinder chromosome:SGD1:V:469681:474725:-1 // ensembl // 10 // --- /// GENSCAN00000016931 // cdna:Genscan chromosome:SGD1:V:472652:473983:-1 // ensembl // 11 // --- /// YER152C // cdna:known chromosome:SGD1:V:472652:473983:-1 gene:YER152C // ensembl // 11 // --- --- No cerevisiae_gene -1.38599791767747 -1.23050895982398 1.08601446690423 1.13348335131369 1.03696400773747 Max fold change below threshold 4 1.38599791767747 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774015_at YBL066C.S1 Putative transcription factor, has homolog in Kluyveromyces lactis 1.3858981872109 617.484741210938 478.376800537109 SEF1 --- --- --- 478.939300537109 571.208374023438 663.761108398438 477.814300537109 0.00122069998178631 0.00122069998178631 0.00122069998178631 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL066C /GEN=SEF1 /DB_XREF=GI:6319406 /SEG=NC_001134:-96906,100079 /DEF=Suppressor of Essential Function /NOTE=Sef1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000162 // SEF1 SGDID:S0000162, Chr II from 100117-96671, reverse complement, Verified ORF // sgd // 9 // --- /// GENSCAN00000021087 // cdna:Genscan chromosome:SGD1:II:96671:100117:-1 // ensembl // 9 // --- /// GENEFINDER00000022368 // cdna:GeneFinder chromosome:SGD1:II:96671:100117:-1 // ensembl // 9 // --- /// YBL066C // cdna:known chromosome:SGD1:II:96671:100117:-1 gene:YBL066C // ensembl // 9 // --- --- No cerevisiae_gene -1.1071073307432 1.19265295911789 1.07983664718285 1.3858981872109 -1.00235447117999 Max fold change below threshold 4 1.3858981872109 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771568_at YBL067C.S1 Putative ubiquitin-specific protease 1.38550536507581 320.854675292969 333.552383422852 UBP13 --- --- 4843 // ubiquitin-specific protease activity // traceable author statement 301.579376220703 302.377899169922 339.331451416016 365.525390625 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL067C /GEN=UBP13 /DB_XREF=GI:6319404 /SEG=NC_001134:-93817,95883 /DEF=Putative ubiquitin-specific protease /NOTE=Ubp13p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: ubiquitin-specific protease activity [goid GO:0004843] [evidence TAS] [pmid 8982460]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000163 // UBP13 SGDID:S0000163, Chr II from 95884-93641, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021086 // cdna:Genscan chromosome:SGD1:II:93641:95884:-1 // ensembl // 11 // --- /// GENEFINDER00000022139 // cdna:GeneFinder chromosome:SGD1:II:93641:95515:-1 // ensembl // 11 // --- /// YBL067C // cdna:known chromosome:SGD1:II:93641:95884:-1 gene:YBL067C // ensembl // 11 // --- --- No cerevisiae_gene 1.00914962559272 1.00264780357074 1.38550536507581 1.12518122316058 1.2120370935362 Max fold change below threshold 4 1.38550536507581 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772617_at YHR188C.S1 Transmembrane protein subunit of the glycosylphosphatidylinositol transamidase complex that adds GPIs to newly synthesized proteins; human PIG-Tp homolog 1.38522574735503 725.550933837891 894.533538818359 GPI16 16255 // attachment of GPI anchor to protein // inferred from mutant phenotype 42765 // GPI-anchor transamidase complex // inferred from physical interaction 3923 // GPI-anchor transamidase activity // inferred from mutant phenotype /// 3923 // GPI-anchor transamidase activity // inferred from physical interaction 854.338317871094 616.750244140625 834.351623535156 934.728759765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR188C /GEN=GPI16 /DB_XREF=GI:6321982 /SEG=NC_001140:-482003,483835 /DEF=Transmembrane protein subunit of the glycosylphosphatidylinositol transamidase complex that adds GPIs to newly synthesized proteins; human PIG-Tp homolog /NOTE=Gpi16p; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA] [pmid 11598210]; go_function: GPI-anchor transamidase activity [goid GO:0003923] [evidence IMP,IPI] [pmid 11598210]; go_process: attachment of GPI anchor to protein [goid GO:0016255] [evidence IMP] [pmid 11598210] --- --- --- --- --- S0001231 // span:546-568 // numtm:1 S0001231 // GPI16 SGDID:S0001231, Chr VIII from 483836-482004, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016711 // cdna:Genscan chromosome:SGD1:VIII:482004:483836:-1 // ensembl // 11 // --- /// GENEFINDER00000020189 // cdna:GeneFinder chromosome:SGD1:VIII:482004:483836:-1 // ensembl // 11 // --- /// YHR188C // cdna:known chromosome:SGD1:VIII:482004:483836:-1 gene:YHR188C // ensembl // 11 // --- --- No cerevisiae_gene -1.09290626836072 -1.38522574735503 -1.10965720716996 -1.02395476172414 1.09409672984685 Max fold change below threshold 4 1.38522574735503 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775303_at YBL064C.S1 Mitochondrial peroxiredoxin (1-Cys Prx) with thioredoxin peroxidase activity, has a role in reduction of hydroperoxides; induced during respiratory growth and under conditions of oxidative stress 1.38512180990233 5299.603515625 3946.12341308594 PRX1 30503 // regulation of cell redox homeostasis // inferred from mutant phenotype /// 30503 // regulation of cell redox homeostasis // inferred from direct assay 5739 // mitochondrion // inferred from direct assay /// 5739 // mitochondrion // inferred from sequence similarity 8379 // thioredoxin peroxidase activity // inferred from mutant phenotype /// 8379 // thioredoxin peroxidase activity // inferred from sequence similarity /// 8379 // thioredoxin peroxidase activity // inferred from direct assay 4224.63232421875 5851.63037109375 4747.57666015625 3667.61450195313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL064C /GEN=PRX1 /DB_XREF=GI:6319407 /SEG=NC_001134:-100335,101120 /DEF=Mitochondrial peroxiredoxin (1-Cys Prx) with thioredoxin peroxidase activity, has a role in reduction of hydroperoxides; induced during respiratory growth and under conditions of oxidative stress /NOTE=Prx1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA,ISS] [pmid 10681558]; go_function: thioredoxin peroxidase activity [goid GO:0008379] [evidence IDA,IMP,ISS] [pmid 10681558]; go_process: regulation of cell redox homeostasis [goid GO:0030503] [evidence IDA,IMP] [pmid 10681558] --- --- --- --- --- --- S0000160 // PRX1 SGDID:S0000160, Chr II from 101158-100373, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021088 // cdna:Genscan chromosome:SGD1:II:100373:101158:-1 // ensembl // 11 // --- /// GENEFINDER00000022396 // cdna:GeneFinder chromosome:SGD1:II:100373:101158:-1 // ensembl // 11 // --- /// YBL064C // cdna:known chromosome:SGD1:II:100373:101158:-1 gene:YBL064C // ensembl // 11 // --- --- No cerevisiae_gene -1.15062989396562 1.38512180990233 -1.13035501472772 1.12378457953361 -1.15187469183825 Max fold change below threshold 4 1.38512180990233 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772891_at YMR171C.S1 Endosomal protein of unknown function, mRNA is targeted to the bud via the mRNA transport system involving She2p 1.38496770334547 1308.46948242188 1766.90454101563 --- --- 5768 // endosome // inferred from direct assay --- 1725.50842285156 1261.24328613281 1355.69567871094 1808.30065917969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR171C /GEN=ALD2 /DB_XREF=GI:6323823 /SEG=NC_001145:-603867,605519 /DEF=Endosomal protein of unknown function, mRNA is targeted to the bud via the mRNA transport system involving She2p /NOTE=Ymr171cp; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004781 // span:46-68 // numtm:1 S0004781 // YMR171C SGDID:S0004781, Chr XIII from 605519-603867, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018857 // cdna:Genscan chromosome:SGD1:XIII:603867:605519:-1 // ensembl // 11 // --- /// GENEFINDER00000021808 // cdna:GeneFinder chromosome:SGD1:XIII:603867:605189:-1 // ensembl // 11 // --- /// YMR171C // cdna:known chromosome:SGD1:XIII:603867:605519:-1 gene:YMR171C // ensembl // 11 // --- --- No cerevisiae_gene -1.11759561619714 -1.36810117589784 1.38496770334547 -1.27278448249703 1.04798135739686 Max fold change below threshold 4 1.38496770334547 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775814_at YDL178W.S1 D-lactate dehydrogenase, located in the mitochondrial matrix 1.38489915314416 1685.26751708984 1399.53033447266 DLD2 6089 // lactate metabolism // traceable author statement 5759 // mitochondrial matrix // inferred from direct assay 3779 // actin binding // inferred from physical interaction /// 3779 // actin binding // inferred from mutant phenotype /// 4458 // D-lactate dehydrogenase (cytochrome) activity // inferred from direct assay 1366.80041503906 1477.654296875 1892.88073730469 1432.26025390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL178W /GEN=DLD2 /DB_XREF=GI:6320023 /SEG=NC_001136:+139523,141115 /DEF=D-lactate dehydrogenase, located in the mitochondrial matrix /NOTE=Dld2p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 10509019]; go_function: D-lactate dehydrogenase (cytochrome) activity [goid GO:0004458] [evidence IDA] [pmid 10509019]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002337 // DLD2 SGDID:S0002337, Chr IV from 139523-141115, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023806 // cdna:GeneFinder chromosome:SGD1:IV:139523:141115:1 // ensembl // 11 // --- /// GENSCAN00000024969 // cdna:Genscan chromosome:SGD1:IV:139523:141115:1 // ensembl // 11 // --- /// YDL178W // cdna:known chromosome:SGD1:IV:139523:141115:1 gene:YDL178W // ensembl // 11 // --- --- No cerevisiae_gene 1.18322366091328 1.0811046591852 1.11485323210705 1.38489915314416 1.04789275606513 Max fold change below threshold 4 1.38489915314416 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770219_at YGR140W.S1 Essential kinetochore protein, component of the CBF3 multisubunit complex that binds to the CDEIII region of the centromere; Cbf2p also binds to the CDEII region possibly forming a different multimeric complex, ubiquitinated in vivo 1.38477474003957 238.757217407227 292.369415283203 CBF2 7059 // chromosome segregation // inferred from mutant phenotype 778 // condensed nuclear chromosome kinetochore // traceable author statement /// 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 51233 // spindle midzone // inferred from direct assay 8301 // DNA bending activity // inferred from direct assay /// 19237 // centromeric DNA binding // inferred from direct assay 295.608795166016 264.043762207031 213.470672607422 289.130035400391 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR140W /GEN=CBF2 /DB_XREF=GI:6321579 /SEG=NC_001139:+767432,770302 /DEF=110 kd component (Cbf3a) of the multisubunit 'Cbf3' kinetochore protein complex, which binds to the CDE III element of centromeres /NOTE=Cbf2p; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence TAS] [pmid 10097110]; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IDA] [pmid 9407032]; go_function: DNA bending activity [goid GO:0008301] [evidence IDA] [pmid 10097110]; go_function: centromeric DNA binding [goid GO:0019237] [evidence IDA] [pmid 9407032]; go_process: chromosome segregation [goid GO:0007059] [evidence IMP] [pmid 8486732] --- --- --- --- --- --- S0003372 // CBF2 SGDID:S0003372, Chr VII from 767434-770304, Verified ORF // sgd // 11 // --- /// GENSCAN00000019448 // cdna:Genscan chromosome:SGD1:VII:767476:770304:1 // ensembl // 11 // --- /// GENEFINDER00000021552 // cdna:GeneFinder chromosome:SGD1:VII:767503:770304:1 // ensembl // 11 // --- /// YGR140W // cdna:known chromosome:SGD1:VII:767434:770304:1 gene:YGR140W // ensembl // 11 // --- --- No cerevisiae_gene -1.13968247992042 -1.11954470234459 -1.14580210271908 -1.38477474003957 -1.02240777149511 Max fold change below threshold 4 1.38477474003957 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772193_at YLR297W.S1 Hypothetical protein 1.38454877185236 1617.78405761719 1303.10827636719 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 1296.02612304688 1794.41137695313 1441.15673828125 1310.1904296875 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR297W /GEN=ATP14 /DB_XREF=GI:6323328 /SEG=NC_001144:+724046,724435 /DEF=Hypothetical ORF /NOTE=Ylr297wp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004288 // span:77-99 // numtm:1 S0004288 // YLR297W SGDID:S0004288, Chr XII from 724046-724435, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018049 // cdna:Genscan chromosome:SGD1:XII:724046:724435:1 // ensembl // 11 // --- /// YLR297W // cdna:known chromosome:SGD1:XII:724046:724435:1 gene:YLR297W // ensembl // 11 // --- --- No cerevisiae_gene 1.11619098193603 1.38454877185236 -1.02291366788641 1.11198124224007 1.01092902865825 Max fold change below threshold 4 1.38454877185236 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777682_at YLR115W.S1 Subunit of the mRNA cleavage and polyadenlylation factor (CPF); required for pre-mRNA cleavage, polyadenylation and poly(A) site recognition, 43% similarity with the mammalian CPSF-100 protein. 1.38448531066917 433.792358398438 406.677581787109 CFT2 6378 // mRNA polyadenylylation // inferred from direct assay /// 6378 // mRNA polyadenylylation // traceable author statement /// 6379 // mRNA cleavage // inferred from direct assay /// 6379 // mRNA cleavage // traceable author statement 5847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from physical interaction /// 5849 // mRNA cleavage factor complex // inferred from physical interaction 3723 // RNA binding // inferred from physical interaction 383.400512695313 443.146392822266 424.438323974609 429.954650878906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR115W /GEN=CFT2 /DB_XREF=GI:6323144 /SEG=NC_001144:+377986,380565 /DEF=cleaves pre-mRNAs prior to polyadenylation; homologous to both the 73- and 100-kDa subunits of mammalian cleavage and polyadenylation specificity factor (CPSF), as well as to YSH1/BRR5 /NOTE=Cft2p; go_component: mRNA cleavage and polyadenylation specificity factor complex [goid GO:0005847] [evidence TAS] [pmid 11344258]; go_component: mRNA cleavage factor complex [goid GO:0005849] [evidence IPI] [pmid 9099738]; go_function: cleavage/polyadenylation specificity factor activity [goid GO:0030364] [evidence IPI,TAS] [pmid 11344258]; go_process: mRNA cleavage [goid GO:0006379] [evidence IDA,TAS] [pmid 11344258]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IDA,TAS] [pmid 11344258] --- --- --- --- --- --- S0004105 // CFT2 SGDID:S0004105, Chr XII from 377986-380565, Verified ORF // sgd // 11 // --- /// GENSCAN00000017909 // cdna:Genscan chromosome:SGD1:XII:377986:380565:1 // ensembl // 11 // --- /// GENEFINDER00000024594 // cdna:GeneFinder chromosome:SGD1:XII:378733:380565:1 // ensembl // 11 // --- /// YLR115W // cdna:known chromosome:SGD1:XII:377986:380565:1 gene:YLR115W // ensembl // 11 // --- --- No cerevisiae_gene 1.010360282054 1.15583150817128 1.38448531066917 1.10703640167511 1.12142429820012 Max fold change below threshold 4 1.38448531066917 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774604_at YIL078W.S1 Threonyl-tRNA synthetase, essential cytoplasmic protein 1.38431643525031 3815.56469726563 2789.35961914063 THS1 6412 // protein biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from direct assay 4829 // threonine-tRNA ligase activity // inferred from sequence similarity 3178.82592773438 3894.83227539063 3736.29711914063 2399.89331054688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL078W /GEN=THS1 /DB_XREF=GI:14318437 /SEG=NC_001141:+212496,214700 /DEF=Threonyl-tRNA synthetase, cytoplasmic /NOTE=Ths1p; go_component: cytoplasm [goid GO:0005737] [evidence IMP] [pmid 2995918]; go_function: threonine-tRNA ligase activity [goid GO:0004829] [evidence ISS] [pmid 2995918]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP] [pmid 10471698] --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 1.89999997615814 --- S0001340 // THS1 SGDID:S0001340, Chr IX from 212496-214700, Verified ORF // sgd // 11 // --- /// GENSCAN00000016417 // cdna:Genscan chromosome:SGD1:IX:212496:214700:1 // ensembl // 11 // --- /// GENEFINDER00000019000 // cdna:GeneFinder chromosome:SGD1:IX:212496:214700:1 // ensembl // 11 // --- /// YIL078W // cdna:known chromosome:SGD1:IX:212496:214700:1 gene:YIL078W // ensembl // 11 // --- --- No cerevisiae_gene 1.38431643525031 1.22524238946502 -1.2884356789568 1.17537015366034 -1.3245696855624 Max fold change below threshold 4 1.38431643525031 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778606_at YKR084C.S1 GTP binding protein with sequence similarity to the elongation factor class of G proteins, EF-1alpha and Sup35p; associates with Dom34p, and shares a similar genetic relationship with genes that encode ribosomal protein components 1.38337102338971 404.806259155273 505.800888061523 HBS1 6412 // protein biosynthesis // inferred from mutant phenotype /// 6412 // protein biosynthesis // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay --- 489.022796630859 353.500823974609 456.111694335938 522.578979492188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR084C /GEN=HBS1 /DB_XREF=GI:6322937 /SEG=NC_001143:-596697,598532 /DEF=GTP binding protein with sequence similarity to the elongation factor class of G proteins, EF-1alpha and Sup35p; associates with Dom34p, and shares a similar genetic relationship with genes that encode ribosomal protein components /NOTE=Hbs1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP,IPI] [pmid 11909951] --- --- --- --- --- --- S0001792 // HBS1 SGDID:S0001792, Chr XI from 598532-596697, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018486 // cdna:Genscan chromosome:SGD1:XI:596697:598532:-1 // ensembl // 11 // --- /// GENEFINDER00000023131 // cdna:GeneFinder chromosome:SGD1:XI:596697:598532:-1 // ensembl // 11 // --- /// YKR084C // cdna:known chromosome:SGD1:XI:596697:598532:-1 gene:YKR084C // ensembl // 11 // --- --- No cerevisiae_gene -1.22572323129006 -1.38337102338971 1.12596763203183 -1.07215579583601 1.06861885190734 Max fold change below threshold 4 1.38337102338971 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780011_at YMR262W.S1 Hypothetical protein 1.38309258984646 631.861511230469 621.59716796875 --- --- --- --- 594.336669921875 604.899353027344 658.823669433594 648.857666015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR262W /GEN=TPS3 /DB_XREF=GI:6323918 /SEG=NC_001145:+793725,794666 /DEF=Hypothetical ORF /NOTE=Ymr262wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004875 // YMR262W SGDID:S0004875, Chr XIII from 793725-794666, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018934 // cdna:Genscan chromosome:SGD1:XIII:793725:794666:1 // ensembl // 11 // --- /// GENEFINDER00000021865 // cdna:GeneFinder chromosome:SGD1:XIII:793824:794666:1 // ensembl // 11 // --- /// YMR262W // cdna:known chromosome:SGD1:XIII:793725:794666:1 gene:YMR262W // ensembl // 11 // --- --- No cerevisiae_gene 1.38309258984646 1.01777222177265 1.35153957664364 1.10850247473405 1.09173419520104 Max fold change below threshold 4 1.38309258984646 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774812_at YKL020C.S1 ER membrane protein involved, with its homolog Mga2p, in regulation of OLE1 transcription; inactive ER form dimerizes and one subunit is then activated by ubiquitin/proteasome-dependent processing followed by nuclear targeting 1.38308932689153 1635.43804931641 1977.09545898438 SPT23 6631 // fatty acid metabolism // inferred from mutant phenotype /// 9409 // response to cold // inferred from expression pattern /// 9409 // response to cold // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 5634 // nucleus // inferred from curator /// 5789 // endoplasmic reticulum membrane // traceable author statement /// 5789 // endoplasmic reticulum membrane // inferred from direct assay 3677 // DNA binding // inferred from physical interaction /// 16563 // transcriptional activator activity // inferred from mutant phenotype 2002.93823242188 1790.02551269531 1480.8505859375 1951.25268554688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL020C /GEN=SPT23 /DB_XREF=GI:6322832 /SEG=NC_001143:-398475,401723 /DEF=ER membrane protein involved, with its homolog Mga2p, in regulation of OLE1 transcription; inactive ER form dimerizes and one subunit is then activated by ubiquitin/proteasome-dependent processing followed by nuclear targeting /NOTE=Spt23p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA,TAS] [pmid 11557770]; go_function: transcriptional activator activity [goid GO:0016563] [evidence IMP] [pmid 11557770]; go_process: fatty acid metabolism [goid GO:0006631] [evidence IMP] [pmid 11557770]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IMP] [pmid 11557770]; go_process: response to cold [goid GO:0009409] [evidence IEP,IMP] [pmid 11855848] --- --- --- --- --- S0001503 // span:1006-1028 // numtm:1 S0001503 // SPT23 SGDID:S0001503, Chr XI from 401723-398475, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018402 // cdna:Genscan chromosome:SGD1:XI:398475:401723:-1 // ensembl // 11 // --- /// GENEFINDER00000022977 // cdna:GeneFinder chromosome:SGD1:XI:398475:400727:-1 // ensembl // 11 // --- /// YKL020C // cdna:known chromosome:SGD1:XI:398475:401723:-1 gene:YKL020C // ensembl // 11 // --- --- No cerevisiae_gene -1.38308932689153 -1.1189439581819 -1.0288249073886 -1.35255930033876 -1.0264883924352 Max fold change below threshold 4 1.38308932689153 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774870_at YER051W.S1 Hypothetical protein 1.38292878896248 497.110305786133 702.143890380859 --- --- --- --- 655.266967773438 520.395080566406 473.825531005859 749.020812988281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER051W /GEN=RSM18 /DB_XREF=GI:6320892 /SEG=NC_001137:+254655,256133 /DEF=Hypothetical ORF /NOTE=Yer051wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000853 // YER051W SGDID:S0000853, Chr V from 254655-256133, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016845 // cdna:Genscan chromosome:SGD1:V:254655:256133:1 // ensembl // 11 // --- /// GENEFINDER00000019692 // cdna:GeneFinder chromosome:SGD1:V:254655:256133:1 // ensembl // 11 // --- /// YER051W // cdna:known chromosome:SGD1:V:254655:256133:1 gene:YER051W // ensembl // 11 // --- --- No cerevisiae_gene -1.1451755855456 -1.25917210258835 -1.04055419750391 -1.38292878896248 1.1430773254654 Max fold change below threshold 4 1.38292878896248 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779652_at YOR103C.S1 Epsilon subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes asparagine-linked glycosylation of newly synthesized proteins 1.38281884168974 879.123596191406 828.237091064453 OST2 6487 // N-linked glycosylation // traceable author statement /// 6487 // N-linked glycosylation // inferred from physical interaction 8250 // oligosaccharyl transferase complex // inferred from physical interaction 4579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // traceable author statement /// 4579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from physical interaction 825.356323242188 902.015991210938 856.231201171875 831.117858886719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR103C /GEN=OST2 /DB_XREF=GI:37362695 /SEG=NC_001147:-516449,516841 /DEF=Epsilon subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes aspargine-linked glycosylation of newly synthesized proteins /NOTE=Ost2p; go_component: oligosaccharyl transferase complex [goid GO:0008250] [evidence IPI] [pmid 10358084]; go_function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity [goid GO:0004579] [evidence TAS] [pmid 9135133]; go_function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity [goid GO:0004579] [evidence IPI] [pmid 9405463]; go_process: N-linked glycosylation [goid GO:0006487] [evidence TAS] [pmid 9135133]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IPI] [pmid 9405463] --- --- --- --- --- S0005629 // span:46-68,73-95,110-129 // numtm:3 S0005629 // OST2 SGDID:S0005629, Chr XV from 516841-516449, reverse complement, Verified ORF // sgd // 11 // --- /// YOR103C // cdna:known chromosome:SGD1:XV:516449:516841:-1 gene:YOR103C // ensembl // 11 // --- YOR102W // ensembl // 10 // Negative Strand Matching Probes No cerevisiae_gene -1.11162600556017 1.09288069384095 -1.38281884168974 1.03740793771156 1.00698066457151 Max fold change below threshold 4 1.38281884168974 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779799_at YOR011W.S1 Transporter of the ATP-binding cassette family, involved in uptake of sterols and anaerobic growth 1.38277129175391 214.83137512207 179.701950073242 AUS1 15918 // sterol transport // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 16020 // membrane // inferred from sequence similarity 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from sequence similarity 161.490478515625 206.358352661133 223.304397583008 197.913421630859 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR011W /GEN=AUS1 /DB_XREF=GI:6324585 /SEG=NC_001147:+349678,353862 /DEF=Transporter of the ATP-binding cassette family, involved in uptake of sterols and anaerobic growth /NOTE=Aus1p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 9020838]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence ISS] [pmid 9020838]; go_process: sterol transport [goid GO:0015918] [evidence IMP] [pmid 12077145] --- --- --- --- --- S0005537 // span:389-408,421-443,468-490,497-519,529-551,558-575,636-658,1081-1103,1107-1129,1156-1178,1193-1215,1224-1246,1346-1368 // numtm:13 S0005537 // AUS1 SGDID:S0005537, Chr XV from 349678-353862, Verified ORF // sgd // 11 // --- /// GENSCAN00000017475 // cdna:Genscan chromosome:SGD1:XV:349678:353862:1 // ensembl // 11 // --- /// GENEFINDER00000022608 // cdna:GeneFinder chromosome:SGD1:XV:350992:353862:1 // ensembl // 11 // --- /// YOR011W // cdna:known chromosome:SGD1:XV:349678:353862:1 gene:YOR011W // ensembl // 11 // --- --- No cerevisiae_gene -1.01559243339764 1.27783603440847 -1.11746835678269 1.38277129175391 1.22554235673845 Max fold change below threshold 4 1.38277129175391 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779001_at YJR052W.S1 Protein that recognizes and binds damaged DNA in an ATP-dependent manner (with Rad16p) during nucleotide excision repair; subunit of Nucleotide Excision Repair Factor 4 (NEF4) 1.38250991604632 681.788543701172 748.278015136719 RAD7 715 // nucleotide-excision repair, DNA damage recognition // traceable author statement 108 // repairosome // inferred from direct assay /// 113 // nucleotide excision repair factor 4 complex // inferred from direct assay 3677 // DNA binding // inferred from direct assay /// 8094 // DNA-dependent ATPase activity // inferred from direct assay 755.462097167969 715.758056640625 647.819030761719 741.093933105469 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR052W /GEN=RAD7 /DB_XREF=GI:6322512 /SEG=NC_001142:+531976,533673 /DEF=Protein that recognizes and binds damaged DNA in an ATP-dependent manner (with Rad16p) during nucleotide excision repair; subunit of Nucleotide Excision Repair Factor 4 (NEF4) /NOTE=Rad7p; go_component: nucleotide excision repair factor 4 complex [goid GO:0000113] [evidence IDA] [pmid 9497356]; go_component: repairosome [goid GO:0000108] [evidence IDA] [pmid 9852079]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 10446201]; go_function: DNA-dependent ATPase activity [goid GO:0008094] [evidence IDA] [pmid 9497356]; go_process: nucleotide-excision repair, DNA damage recognition [goid GO:0000715] [evidence TAS] [pmid 10915862] --- --- --- --- --- --- S0003813 // RAD7 SGDID:S0003813, Chr X from 531976-533673, Verified ORF // sgd // 11 // --- /// GENSCAN00000024173 // cdna:Genscan chromosome:SGD1:X:531976:533673:1 // ensembl // 11 // --- /// GENEFINDER00000024518 // cdna:GeneFinder chromosome:SGD1:X:531976:533673:1 // ensembl // 11 // --- /// YJR052W // cdna:known chromosome:SGD1:X:531976:533673:1 gene:YJR052W // ensembl // 11 // --- --- No cerevisiae_gene -1.38250991604632 -1.05547131486538 -1.26771379748848 -1.16616224793471 -1.01938777720429 Max fold change below threshold 4 1.38250991604632 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772509_at YEL007W.S1 Hypothetical protein 1.38231897015802 528.494995117188 522.383666992188 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 499.091857910156 419.472412109375 637.517578125 545.675476074219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL007W /GEN=GCN4 /DB_XREF=GI:6320830 /SEG=NC_001137:+141891,143891 /DEF=Hypothetical ORF /NOTE=Yel007wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000733 // YEL007W SGDID:S0000733, Chr V from 141891-143891, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000019577 // cdna:GeneFinder chromosome:SGD1:V:142560:143891:1 // ensembl // 11 // --- /// GENSCAN00000016798 // cdna:Genscan chromosome:SGD1:V:143343:143891:1 // ensembl // 10 // --- /// YEL007W // cdna:known chromosome:SGD1:V:141891:143891:1 gene:YEL007W // ensembl // 11 // --- --- No cerevisiae_gene 1.1184147819263 -1.18980853925626 -1.38231897015802 1.27735519628485 1.09333676241308 Max fold change below threshold 4 1.38231897015802 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771258_at YPL066W.S1 Hypothetical protein 1.38204498900941 1797.96588134766 2006.68682861328 --- --- 5737 // cytoplasm // inferred from direct assay /// 5935 // bud neck // inferred from direct assay --- 2054.76416015625 2096.5830078125 1499.34875488281 1958.60949707031 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL066W /GEN=BTS1 /DB_XREF=GI:6325191 /SEG=NC_001148:+426228,427667 /DEF=Hypothetical ORF /NOTE=Ypl066wp; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 14562095]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005987 // YPL066W SGDID:S0005987, Chr XVI from 426230-427669, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017137 // cdna:Genscan chromosome:SGD1:XVI:426230:427669:1 // ensembl // 11 // --- /// YPL066W // cdna:known chromosome:SGD1:XVI:426230:427669:1 gene:YPL066W // ensembl // 11 // --- --- No cerevisiae_gene 1.31638006851931 1.02035213990353 -1.38204498900941 -1.37043776737377 -1.04909333036002 Max fold change below threshold 4 1.38204498900941 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775289_at YDR389W.S1 GTPase activating protein (GAP) for Rho1p, involved in signaling to the actin cytoskeleton, null mutations suppress tor2 mutations and temperature sensitive mutations in actin; potential Cdc28p substrate 1.38202049623374 344.656463623047 354.357650756836 SAC7 7264 // small GTPase mediated signal transduction // inferred from physical interaction /// 30037 // actin filament reorganization during cell cycle // inferred from mutant phenotype 5622 // intracellular // traceable author statement 4871 // signal transducer activity // inferred from physical interaction /// 5100 // Rho GTPase activator activity // inferred from direct assay 309.627197265625 299.682952880859 389.629974365234 399.088104248047 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR389W /GEN=SAC7 /DB_XREF=GI:6320597 /SEG=NC_001136:+1252525,1254489 /DEF=GTPase activating protein (GAP) for Rho1p, involved in signaling to the actin cytoskeleton, null mutations suppress tor2 mutations and temperature sensitive mutations in actin; potential Cdc28p substrate /NOTE=Sac7p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 9891811]; go_function: Rho GTPase activator activity [goid GO:0005100] [evidence IDA] [pmid 9891811]; go_function: signal transducer activity [goid GO:0004871] [evidence IPI] [pmid 9891811]; go_process: cell cycle-dependent actin filament reorganization [goid GO:0030037] [evidence IMP] [pmid 9038344]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence IPI] [pmid 9891811] --- --- --- --- --- --- S0002797 // SAC7 SGDID:S0002797, Chr IV from 1252527-1254491, Verified ORF // sgd // 11 // --- /// GENSCAN00000025408 // cdna:Genscan chromosome:SGD1:IV:1252527:1254491:1 // ensembl // 11 // --- /// GENEFINDER00000023443 // cdna:GeneFinder chromosome:SGD1:IV:1252632:1254491:1 // ensembl // 11 // --- /// YDR389W // cdna:known chromosome:SGD1:IV:1252527:1254491:1 gene:YDR389W // ensembl // 11 // --- --- No cerevisiae_gene 1.38202049623374 -1.03318254938818 -1.06293172358376 1.25838420463748 1.28893103633165 Max fold change below threshold 4 1.38202049623374 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769942_at YOL005C.S1 RNA polymerase II subunit B12.5; part of central core; similar to Rpc19p and bacterial alpha subunit 1.3814925077811 498.832153320313 478.901931762695 RPB11 6366 // transcription from RNA polymerase II promoter // traceable author statement 5665 // DNA-directed RNA polymerase II, core complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 439.255767822266 495.131530761719 502.532775878906 518.548095703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL005C /GEN=RPB11 /DB_XREF=GI:6324569 /SEG=NC_001147:-315813,316175 /DEF=RNA polymerase II core subunit /NOTE=Rpb11p; go_component: DNA-directed RNA polymerase II, core complex [goid GO:0005665] [evidence TAS] [pmid 9774381]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 9774381]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence TAS] --- --- --- --- --- --- S0005365 // RPB11 SGDID:S0005365, Chr XV from 316175-315813, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017465 // cdna:Genscan chromosome:SGD1:XV:315813:316175:-1 // ensembl // 11 // --- /// GENEFINDER00000022562 // cdna:GeneFinder chromosome:SGD1:XV:315813:316175:-1 // ensembl // 11 // --- /// YOL005C // cdna:known chromosome:SGD1:XV:315813:316175:-1 gene:YOL005C // ensembl // 11 // --- --- No cerevisiae_gene 1.3814925077811 1.12720553042814 -1.02598951252726 1.14405504194141 1.18051516608188 Max fold change below threshold 4 1.3814925077811 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769566_at YIL075C.S1 Subunit of the 26S proteasome, substrate of the N-acetyltransferase Nat1p 1.3812417969007 2518.70190429688 2076.37390136719 RPN2 6511 // ubiquitin-dependent protein catabolism // inferred from mutant phenotype /// 6511 // ubiquitin-dependent protein catabolism // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 8540 // proteasome regulatory particle, base subcomplex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // inferred from physical interaction /// 4872 // receptor activity // inferred from direct assay 2104.37060546875 2622.2587890625 2415.14501953125 2048.37719726563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL075C /GEN=RPN2 /DB_XREF=GI:6322115 /SEG=NC_001141:-217860,220697 /DEF=Subunit of the 26S proteasome, substrate of the N-acetyltransferase Nat1p /NOTE=Rpn2p; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence IDA] [pmid 9584156]; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence TAS] [pmid 9697412]; go_function: endopeptidase activity [goid GO:0004175] [evidence IPI] [pmid 7565784]; go_function: receptor activity [goid GO:0004872] [evidence IDA] [pmid 12200120]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence IMP,IPI] [pmid 7565784] --- --- --- --- --- --- S0001337 // RPN2 SGDID:S0001337, Chr IX from 220697-217860, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016420 // cdna:Genscan chromosome:SGD1:IX:217860:220697:-1 // ensembl // 11 // --- /// YIL075C // cdna:known chromosome:SGD1:IX:217860:220697:-1 gene:YIL075C // ensembl // 11 // --- GENEFINDER00000019132 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.3812417969007 1.24610122487355 -1.09586171968819 1.14768045764129 -1.02733549674243 Max fold change below threshold 4 1.3812417969007 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775390_at YMR104C.S1 Protein kinase with similarityto serine/threonine protein kinase Ypk1p; functionally redundant with YPK1 at the genetic level; participates in a signaling pathway required for optimal cell wall integrity; homolog of mammalian kinase SGK 1.38112331647868 2064.03302001953 1734.15576171875 YPK2 6468 // protein amino acid phosphorylation // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4672 // protein kinase activity // inferred from sequence similarity 1700.78735351563 1779.06896972656 2348.9970703125 1767.52416992188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR104C /GEN=YPK2 /DB_XREF=GI:6323751 /SEG=NC_001145:-473419,475452 /DEF=protein kinase /NOTE=Ypk2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12221112]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 10074427]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence ISS] [pmid 10074427] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-68 /// hanks // 1.5.3 // AGC group; AGC V Budding yeast AGC-related; YKR2 // 1.0E-152 --- --- S0004710 // YPK2 SGDID:S0004710, Chr XIII from 475452-473419, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018798 // cdna:Genscan chromosome:SGD1:XIII:473419:475452:-1 // ensembl // 11 // --- /// YMR104C // cdna:known chromosome:SGD1:XIII:473419:475452:-1 gene:YMR104C // ensembl // 11 // --- --- No cerevisiae_gene -1.17545467629808 1.04602669231349 1.14356294656154 1.38112331647868 1.0392387774217 Max fold change below threshold 4 1.38112331647868 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772887_at YGL198W.S1 Protein that interacts with Rab GTPases; computational analysis of large-scale protein-protein interaction data suggests a possible role in vesicle-mediated transport 1.38110031119392 2868.79870605469 3117.216796875 YIP4 16192 // vesicle-mediated transport // RCA 16020 // membrane // inferred from sequence similarity 17137 // Rab GTPase binding // inferred from physical interaction 3244.4716796875 2792.61743164063 2944.97998046875 2989.9619140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL198W /GEN=YIP4 /DB_XREF=GI:41629692 /SEG=NC_001139:+123594,124301 /DEF=Protein that interacts with Rab GTPases; computational analysis of large-scale protein-protein interaction data suggests a possible role in vesicle-mediated transport /NOTE=Yip4p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 11943201]; go_function: Rab interactor activity [goid GO:0017137] [evidence IPI] [pmid 11943201]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence TAS] [pmid 14566057] --- --- --- --- --- S0003166 // span:114-133,148-170,183-205,215-234 // numtm:4 S0003166 // YIP4 SGDID:S0003166, Chr VII from 123596-124303, Verified ORF // sgd // 11 // --- /// GENSCAN00000019200 // cdna:Genscan chromosome:SGD1:VII:123596:124303:1 // ensembl // 11 // --- /// GENEFINDER00000021505 // cdna:GeneFinder chromosome:SGD1:VII:123596:124303:1 // ensembl // 11 // --- /// YGL198W // cdna:known chromosome:SGD1:VII:123596:124303:1 gene:YGL198W // ensembl // 11 // --- YGL199C // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene -1.38110031119392 -1.1618031324045 -1.10200079639793 -1.10169566557498 -1.08512140720856 Max fold change below threshold 4 1.38110031119392 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776732_at YPL169C.S1 Poly(A)RNA binding protein involved in nuclear mRNA export, component of the nuclear pore; ortholog of human TAP 1.38065141122259 1212.41265869141 941.140716552734 MEX67 6406 // mRNA-nucleus export // inferred from mutant phenotype 5643 // nuclear pore // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3723 // RNA binding // inferred from direct assay /// 5515 // protein binding // inferred from physical interaction /// 17056 // structural constituent of nuclear pore // inferred from direct assay 932.721801757813 1137.06164550781 1287.763671875 949.559631347656 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL169C /GEN=MEX67 /DB_XREF=GI:6325088 /SEG=NC_001148:-229038,230837 /DEF=Involved in nuclear mRNA export, binds both poly(A) /NOTE=Mex67p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10684247]; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 10684247]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 12524544]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12411502]; go_function: structural constituent of nuclear pore [goid GO:0017056] [evidence IDA] [pmid 10684247]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 10722667] --- --- --- --- --- --- S0006090 // MEX67 SGDID:S0006090, Chr XVI from 230837-229038, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017059 // cdna:Genscan chromosome:SGD1:XVI:229038:230735:-1 // ensembl // 11 // --- /// GENEFINDER00000020995 // cdna:GeneFinder chromosome:SGD1:XVI:229038:230381:-1 // ensembl // 11 // --- /// YPL169C // cdna:known chromosome:SGD1:XVI:229038:230837:-1 gene:YPL169C // ensembl // 11 // --- --- No cerevisiae_gene 1.24822582074236 1.219079090212 -1.28141141362985 1.38065141122259 1.01805235983346 Max fold change below threshold 4 1.38065141122259 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769952_at YDL168W.S1 Bifunctional enzyme containing both alcohol dehydrogenase and glutathione-dependent formaldehyde dehydrogenase activities, functions in formaldehyde detoxification and formation of long chain and complex alcohols, regulated by Hog1p-Sko1p 1.38049509939903 7176.462890625 5700.6923828125 SFA1 46294 // formaldehyde catabolism // inferred from direct assay 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4022 // alcohol dehydrogenase activity // inferred from mutant phenotype /// 4327 // formaldehyde dehydrogenase (glutathione) activity // inferred from direct assay 6611.88330078125 9042.63671875 5310.2890625 4789.50146484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL168W /GEN=SFA1 /DB_XREF=GI:6320033 /SEG=NC_001136:+159605,160765 /DEF=Long-chain alcohol dehydrogenase (glutathione-dependent formaldehyde dehydrogenase) /NOTE=Sfa1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: formaldehyde dehydrogenase (glutathione) activity [goid GO:0004327] [evidence IDA] [pmid 8483449]; go_process: formaldehyde assimilation [goid GO:0019649] [evidence IDA] [pmid 8483449] --- --- --- --- --- --- S0002327 // SFA1 SGDID:S0002327, Chr IV from 159605-160765, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023433 // cdna:GeneFinder chromosome:SGD1:IV:159605:160765:1 // ensembl // 11 // --- /// GENSCAN00000024976 // cdna:Genscan chromosome:SGD1:IV:159605:160765:1 // ensembl // 11 // --- /// YDL168W // cdna:known chromosome:SGD1:IV:159605:160765:1 gene:YDL168W // ensembl // 11 // --- --- No cerevisiae_gene -1.31343134614148 1.36763404727387 -1.17868320630621 -1.24510798243975 -1.38049509939903 Max fold change below threshold 4 1.38049509939903 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778076_at YBR284W.S1 Hypothetical protein 1.37965372629379 130.332641601563 190.296157836914 --- --- --- --- 177.616165161133 128.739669799805 131.92561340332 202.976150512695 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244140625 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR284W /GEN=SSH1 /DB_XREF=GI:6319761 /SEG=NC_001134:+771197,773590 /DEF=Hypothetical ORF /NOTE=Ybr284wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000488 // YBR284W SGDID:S0000488, Chr II from 771235-773628, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021365 // cdna:Genscan chromosome:SGD1:II:771235:773628:1 // ensembl // 11 // --- /// GENEFINDER00000022281 // cdna:GeneFinder chromosome:SGD1:II:771235:773628:1 // ensembl // 11 // --- /// YBR284W // cdna:known chromosome:SGD1:II:771235:773628:1 gene:YBR284W // ensembl // 11 // --- --- No cerevisiae_gene 1.17100040694992 -1.37965372629379 1.23249219754931 -1.34633571585624 1.1427797144959 Max fold change below threshold 4 1.37965372629379 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774843_at YDR233C.S1 Protein of unknown function; has similarity to mammalian reticulon proteins; member of the RTNLA (reticulon-like A) subfamily 1.37962789058734 3416.43151855469 3893.20751953125 RTN1 --- 5739 // mitochondrion // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay --- 4286.13671875 3397.08325195313 3435.77978515625 3500.2783203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR233C /GEN=RTN1 /DB_XREF=GI:6320439 /SEG=NC_001136:-929462,930349 /DEF=reticulon gene member of the RTNLA (reticulon-like A) subfamily /NOTE=Rtn1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- AAP47373.1 // span:51-73,143-165 // numtm:2 /// S0002641 // span:51-73,143-165 // numtm:2 S0002641 // RTN1 SGDID:S0002641, Chr IV from 930351-929464, reverse complement, Verified ORF // sgd // 11 // --- /// AY164798 // Saccharomyces cerevisiae Rtn1p (Rtn1) mRNA, complete cds. // gb // 11 // --- /// GENEFINDER00000023726 // cdna:GeneFinder chromosome:SGD1:IV:929464:930351:-1 // ensembl // 11 // --- /// YDR233C // cdna:known chromosome:SGD1:IV:929464:930351:-1 gene:YDR233C // ensembl // 11 // --- --- No cerevisiae_gene -1.119100029195 -1.2617108268647 -1.37962789058734 -1.24750041817802 -1.22451311767898 Max fold change below threshold 4 1.37962789058734 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779476_at YMR311C.S1 Regulatory subunit of protein phosphatase 1 (Glc7p), involved in glycogen metabolism and chromosome segregation; proposed to regulate Glc7p activity via conformational alteration; ortholog of the mammalian protein phosphatase inhibitor 2 1.37922860824769 3434.48376464844 2613.41174316406 GLC8 5978 // glycogen biosynthesis // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8047 // enzyme activator activity // inferred from direct assay 2582.03784179688 3561.22045898438 3307.7470703125 2644.78564453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR311C /GEN=GLC8 /DB_XREF=GI:6323971 /SEG=NC_001145:-896913,897602 /DEF=Homolog of mammalian protein phosphatase inhibitor 2. /NOTE=Glc8p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: enzyme activator activity [goid GO:0008047] [evidence IDA] [pmid 12127071]; go_process: glycogen biosynthesis [goid GO:0005978] [evidence TAS] [pmid 9584086] --- --- --- --- --- --- S0004928 // GLC8 SGDID:S0004928, Chr XIII from 897602-896913, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018977 // cdna:Genscan chromosome:SGD1:XIII:896913:897602:-1 // ensembl // 11 // --- /// GENEFINDER00000021905 // cdna:GeneFinder chromosome:SGD1:XIII:896913:897602:-1 // ensembl // 11 // --- /// YMR311C // cdna:known chromosome:SGD1:XIII:896913:897602:-1 gene:YMR311C // ensembl // 11 // --- --- No cerevisiae_gene -1.32947268491201 1.37922860824769 1.14380712152115 1.28106064782172 1.02430165883654 Max fold change below threshold 4 1.37922860824769 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778246_at YER175C.S1 Trans-aconitate methyltransferase, cytosolic enzyme that catalyzes the methyl esterification of 3-isopropylmalate, an intermediate of the leucine biosynthetic pathway, and trans-aconitate, which inhibits the citric acid cycle 1.37903146666159 1061.05075073242 1012.8974609375 TMT1 --- 5829 // cytosol // inferred from direct assay 46547 // trans-aconitate 3-methyltransferase activity // inferred from direct assay 973.985473632813 778.944885253906 1343.15661621094 1051.80944824219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER175C /GEN=TMT1 /DB_XREF=GI:6321023 /SEG=NC_001137:-539459,540358 /DEF=Trans-aconitate Methyltransferase 1 /NOTE=Tmt1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 11695919]; go_function: trans-aconitate 3-methyltransferase activity [goid GO:0046547] [evidence IDA] [pmid 11695919]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000977 // TMT1 SGDID:S0000977, Chr V from 540358-539459, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016954 // cdna:Genscan chromosome:SGD1:V:539459:540358:-1 // ensembl // 11 // --- /// GENEFINDER00000019591 // cdna:GeneFinder chromosome:SGD1:V:539459:540277:-1 // ensembl // 11 // --- /// YER175C // cdna:known chromosome:SGD1:V:539459:540358:-1 gene:YER175C // ensembl // 11 // --- --- No cerevisiae_gene 1.22780690394364 -1.25039074274855 1.22041715331546 1.37903146666159 1.07990260298144 Max fold change below threshold 4 1.37903146666159 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773525_at YDL128W.S1 Vacuolar H+/Ca2+ exchanger involved in control of cytosolic Ca2+ concentration; has similarity to sodium/calcium exchangers, including the bovine Na+/Ca2+,K+ antiporter 1.37896035741895 2716.47106933594 2846.86730957031 VCX1 6816 // calcium ion transport // inferred from mutant phenotype /// 6816 // calcium ion transport // inferred from direct assay /// 6828 // manganese ion transport // inferred from direct assay /// 6874 // calcium ion homeostasis // inferred from mutant phenotype 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5774 // vacuolar membrane // inferred from sequence similarity 15085 // calcium ion transporter activity // inferred from mutant phenotype /// 15085 // calcium ion transporter activity // inferred from sequence similarity /// 15085 // calcium ion transporter activity // inferred from direct assay /// 15369 // calcium:hydrogen antiporter activity // traceable author statement 3044.51318359375 2806.42846679688 2626.513671875 2649.22143554688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL128W /GEN=VCX1 /DB_XREF=GI:6320075 /SEG=NC_001136:+232652,233887 /DEF=Similar to sodium/calcium exchangers, including bovine Na+/Ca2+,K+ antiporter; putative vacuolar transmembrane protein /NOTE=Vcx1p; go_component: vacuolar membrane [goid GO:0005774] [evidence ISS] [pmid 8628289]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 8628289]; go_function: calcium ion transporter activity [goid GO:0015085] [evidence IDA,IMP,ISS] [pmid 8628289]; go_function: calcium:hydrogen antiporter activity [goid GO:0015369] [evidence TAS] [pmid 10991947]; go_process: calcium ion homeostasis [goid GO:0006874] [evidence IMP] [pmid 8628289]; go_process: calcium ion transport [goid GO:0006816] [evidence IDA,IMP] [pmid 8628289] --- --- --- --- --- S0002286 // span:31-53,60-82,92-114,127-146,161-183,204-226,253-275,288-310,320-342,349-371,381-398 // numtm:11 S0002286 // VCX1 SGDID:S0002286, Chr IV from 232652-233887, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023885 // cdna:GeneFinder chromosome:SGD1:IV:232652:233887:1 // ensembl // 11 // --- /// GENSCAN00000025004 // cdna:Genscan chromosome:SGD1:IV:232652:233887:1 // ensembl // 11 // --- /// YDL128W // cdna:known chromosome:SGD1:IV:232652:233887:1 gene:YDL128W // ensembl // 11 // --- --- No cerevisiae_gene -1.37896035741895 -1.08483548382354 -1.20700295064339 -1.1591461396888 -1.14921053511908 Max fold change below threshold 4 1.37896035741895 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771802_at YER054C.S1 Putative regulatory subunit of the protein phosphatase Glc7p, proposed to be involved in glycogen metabolism; contains a conserved motif (GVNK motif) that is also found in Gac1p, Pig1p, and Pig2p 1.37829175789531 753.499450683594 597.171966552734 GIP2 6470 // protein amino acid dephosphorylation // inferred from physical interaction 164 // protein phosphatase type 1 complex // inferred from physical interaction 19888 // protein phosphatase regulator activity // inferred from sequence similarity /// 19888 // protein phosphatase regulator activity // inferred from physical interaction 552.427795410156 761.406677246094 745.592224121094 641.916137695313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER054C /GEN=GIP2 /DB_XREF=GI:6320895 /SEG=NC_001137:-262051,263697 /DEF=Glc7-interacting protein; shares homology with PIG2; contains conserved 25 residue motif, called the GVNK motif, also found in GAC1, PIG1, PIG2, and RGI, the mammalian type 1 phosphatase targeting subunit. /NOTE=Gip2p; go_component: protein phosphatase type 1 complex [goid GO:0000164] [evidence IPI] [pmid 8754819]; go_function: protein phosphatase regulator activity [goid GO:0019888] [evidence IPI] [pmid 8754819]; go_function: protein phosphatase regulator activity [goid GO:0019888] [evidence ISS] [pmid 9046081]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence IPI] [pmid 8754819] --- --- --- --- --- --- S0000856 // GIP2 SGDID:S0000856, Chr V from 263697-262051, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016848 // cdna:Genscan chromosome:SGD1:V:262051:263697:-1 // ensembl // 11 // --- /// YER054C // cdna:known chromosome:SGD1:V:262051:263697:-1 gene:YER054C // ensembl // 11 // --- --- No cerevisiae_gene 1.14566648440273 1.37829175789531 -1.03079629928269 1.34966457212299 1.16199102041691 Max fold change below threshold 4 1.37829175789531 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775859_at YER043C.S1 S-adenosyl-L-homocysteine hydrolase, catabolizes S-adenosyl-L-homocysteine which is formed after donation of the activated methyl group of S-adenosyl-L-methionine (AdoMet) to an acceptor 1.37828535465588 6074.67114257813 4492.84143066406 SAH1 6555 // methionine metabolism // non-traceable author statement /// 16259 // selenocysteine metabolism // non-traceable author statement 5737 // cytoplasm // inferred from direct assay 4013 // adenosylhomocysteinase activity // inferred from sequence similarity 5092.662109375 7019.1416015625 5130.20068359375 3893.02075195313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER043C /GEN=SAH1 /DB_XREF=GI:6320882 /SEG=NC_001137:-235769,237118 /DEF=Putative S-adenosyl-L-homocysteine hydrolase with a probable role in S-adenosylhomocysteine catabolism and/or methionine degradation /NOTE=Sah1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: adenosylhomocysteinase activity [goid GO:0004013] [evidence ISS] [pmid 8962070]; go_process: methionine metabolism [goid GO:0006555] [evidence NAS] [pmid 11752249]; go_process: selenocysteine metabolism [goid GO:0016259] [evidence NAS] [pmid 11752249] --- --- --- --- --- --- S0000845 // SAH1 SGDID:S0000845, Chr V from 237118-235769, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016841 // cdna:Genscan chromosome:SGD1:V:235769:237118:-1 // ensembl // 11 // --- /// GENEFINDER00000019614 // cdna:GeneFinder chromosome:SGD1:V:235769:237118:-1 // ensembl // 11 // --- /// YER043C // cdna:known chromosome:SGD1:V:235769:237118:-1 gene:YER043C // ensembl // 11 // --- --- No cerevisiae_gene -1.06134407766726 1.37828535465588 -1.14083880940641 1.00737111031766 -1.30815180135375 Max fold change below threshold 4 1.37828535465588 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769792_at YGL196W.S1 Hypothetical protein 1.37802999342522 652.962890625 582.097595214844 --- --- --- --- 557.364990234375 537.860107421875 768.065673828125 606.830200195313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL196W /GEN=MDS3 /DB_XREF=GI:6321242 /SEG=NC_001139:+130553,131050 /DEF=Hypothetical ORF /NOTE=Ygl196wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003164 // YGL196W SGDID:S0003164, Chr VII from 129888-131174, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019202 // cdna:Genscan chromosome:SGD1:VII:129888:131174:1 // ensembl // 11 // --- /// YGL196W // cdna:known chromosome:SGD1:VII:129888:131174:1 gene:YGL196W // ensembl // 11 // --- --- No cerevisiae_gene 1.05934185645259 -1.03626385847055 -1.24073779313822 1.37802999342522 1.08874832619131 Max fold change below threshold 4 1.37802999342522 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773138_at YPR190C.S1 RNA polymerase III subunit C82 1.37778579410637 236.65796661377 309.688278198242 RPC82 6383 // transcription from RNA polymerase III promoter // traceable author statement 5666 // DNA-directed RNA polymerase III complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 309.229553222656 224.439498901367 248.876434326172 310.147003173828 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR190C /GEN=RPC82 /DB_XREF=GI:6325448 /SEG=NC_001148:-917071,919035 /DEF=RNA polymerase III subunit C82 /NOTE=Rpc82p; go_component: DNA-directed RNA polymerase III complex [goid GO:0005666] [evidence TAS] [pmid 8246845]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 8246845]; go_process: transcription from Pol III promoter [goid GO:0006383] [evidence TAS] --- --- --- --- --- --- S0006394 // RPC82 SGDID:S0006394, Chr XVI from 919037-917073, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017331 // cdna:Genscan chromosome:SGD1:XVI:917073:919037:-1 // ensembl // 11 // --- /// GENEFINDER00000020774 // cdna:GeneFinder chromosome:SGD1:XVI:917073:919037:-1 // ensembl // 11 // --- /// YPR190C // cdna:known chromosome:SGD1:XVI:917073:919037:-1 gene:YPR190C // ensembl // 11 // --- --- No cerevisiae_gene 1.1372654481461 -1.37778579410637 -1.17782632676178 -1.24250234482782 1.00296688961844 Max fold change below threshold 4 1.37778579410637 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
RPTR-Sc-J01347-3_at AFFX-Sc-J01347-3 --- 1.37751706258359 --- --- --- --- 3436.58154296875 2956.42236328125 2838.05151367188 3063.02490234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL J01347 /FEA=CDS_3 /DB_XREF=AAB59342.1 GI:172193 /NOTE=D protein --- --- --- --- --- --- AFFX-Sc-J01347-3 // --- // affx // --- // --- --- No No -1.37751706258359 -1.16241224043326 1.30560281802567 -1.21089470237364 -1.12195677558454 Max fold change below threshold 4 1.37751706258359 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772730_at YLR213C.S1 Protein with similarity to Crh1p, which is a putative glycosidase of the cell wall 1.37738144609208 270.110717773438 243.693489074707 CRR1 --- --- --- 227.418930053711 226.978820800781 313.242614746094 259.968048095703 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR213C /GEN=CRR1 /DB_XREF=GI:6323242 /SEG=NC_001144:-566656,567924 /DEF=Protein with similarity to Crh1p, which is a putative glycosidase of the cell wall /NOTE=Crr1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004203 // CRR1 SGDID:S0004203, Chr XII from 567924-566656, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017984 // cdna:Genscan chromosome:SGD1:XII:566656:567924:-1 // ensembl // 11 // --- /// GENEFINDER00000024568 // cdna:GeneFinder chromosome:SGD1:XII:566656:567924:-1 // ensembl // 11 // --- /// YLR213C // cdna:known chromosome:SGD1:XII:566656:567924:-1 gene:YLR213C // ensembl // 11 // --- --- No cerevisiae_gene 1.13882711815325 -1.00193898819007 1.06414646090979 1.37738144609208 1.14312404879534 Max fold change below threshold 4 1.37738144609208 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774592_at YOR313C.S1 Protein whose expression is induced during sporulation; not required for sporulation; heterologous expression in E. coli induces the SOS response that senses DNA damage 1.37685384615578 37.9154052734375 44.947286605835 SPS4 6259 // DNA metabolism // inferred from genetic interaction /// 7126 // meiosis // inferred from expression pattern /// 30437 // sporulation (sensu Fungi) // inferred from expression pattern --- --- 41.733455657959 35.0133438110352 40.8174667358398 48.1611175537109 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR313C /GEN=SPS4 /DB_XREF=GI:6324889 /SEG=NC_001147:-901853,902869 /DEF=sporulation-specific protein /NOTE=Sps4p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA metabolism [goid GO:0006259] [evidence IGI] [pmid 10051619]; go_process: meiosis [goid GO:0007126] [evidence IEP] [pmid 10051619]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IEP] [pmid 3540611] --- --- --- --- --- --- S0005840 // SPS4 SGDID:S0005840, Chr XV from 902869-901853, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017768 // cdna:Genscan chromosome:SGD1:XV:901853:902869:-1 // ensembl // 11 // --- /// YOR313C // cdna:known chromosome:SGD1:XV:901853:902869:-1 gene:YOR313C // ensembl // 11 // --- --- No cerevisiae_gene -1.37685384615578 -1.19193002197082 1.30166756930305 -1.02244110169911 1.1540170061265 Max fold change below threshold 4 1.37685384615578 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778496_at YDR422C.S1 AP-1-like bZIP transcriptional activator involved in multiple stress responses, iron metabolism, and pleiotropic drug resistance; controls a set of genes involved in stabilizing proteins, binds consensus sequence TTACTAA; 5' UTR contains uORFs /// Alternate beta-subunit of the Snf1p kinase complex, may confer substrate specificity; vacuolar protein containing KIS (Kinase-Interacting Sequence) and ASC (Association with Snf1 kinase Complex) domains involved in protein interactions 1.37671342390135 659.458709716797 924.047973632813 CAD1 /// SIP1 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 46686 // response to cadmium ion // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from mutant phenotype /// 7165 // signal transduction // inferred from mutant phenotype 5634 // nucleus // inferred from curator /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5773 // vacuole // inferred from direct assay 3702 // RNA polymerase II transcription factor activity // inferred from direct assay /// 4679 // AMP-activated protein kinase activity // inferred from mutant phenotype 869.238403320313 631.386596679688 687.530822753906 978.857543945313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR422C /GEN=SIP1 /DB_XREF=GI:6320630 /SEG=NC_001136:-1315314,1317905 /DEF=SNF1 protein kinase substrate /NOTE=Sip1p; go_component: vacuole [goid GO:0005773] [evidence IDA] [pmid 11331606]; go_function: SNF1A/AMP-activated protein kinase activity [goid GO:0004679] [evidence IMP] [pmid 10990457]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IMP] [pmid 10990457]; go_process: signal transduction [goid GO:0007165] [evidence IMP] [pmid 10990457] --- --- --- --- --- --- S0002830 // SIP1 SGDID:S0002830, Chr IV from 1317907-1315316, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023729 // cdna:GeneFinder chromosome:SGD1:IV:1315316:1317763:-1 // ensembl // 11 // --- /// GENSCAN00000025434 // cdna:Genscan chromosome:SGD1:IV:1315316:1317763:-1 // ensembl // 11 // --- /// YDR422C // cdna:known chromosome:SGD1:IV:1315316:1317907:-1 gene:YDR422C // ensembl // 11 // --- --- No cerevisiae_gene -1.00569630385334 -1.37671342390135 -1.12433226596941 -1.26429008642635 1.1261094081972 Max fold change below threshold 4 1.37671342390135 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779255_at SPCC4G3.13c.S1 --- 1.37671289320122 --- --- --- --- 7.75901031494141 6.54575395584106 10.1161823272705 5.63589572906494 0.24609400331974 0.0952147990465164 0.0805663987994194 0.0561522990465164 A A A M B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC4G3.13c /DEF=CUE domain protein --- --- --- --- --- --- SPCC4G3.13c // |||CUE domain protein|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 9 // --- --- No No -1.07585102872425 -1.18535013190004 -1.35307014370871 1.30379802534737 -1.37671289320122 Max fold change below threshold 4 1.37671289320122 Max fold change below threshold APAAAM No 4 0 AAAM 3 0 1 No No x = 1
1776188_at YDL110C.S1 Hypothetical protein 1.37641490073731 4228.31823730469 4276.97436523438 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 4760.12158203125 4928.0400390625 3528.59643554688 3793.8271484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL110C /GEN=RRP42 /DB_XREF=GI:6320093 /SEG=NC_001136:-264512,264964 /DEF=Hypothetical ORF /NOTE=Ydl110cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002268 // YDL110C SGDID:S0002268, Chr IV from 264964-264512, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023537 // cdna:GeneFinder chromosome:SGD1:IV:264512:264964:-1 // ensembl // 11 // --- /// GENSCAN00000025016 // cdna:Genscan chromosome:SGD1:IV:264512:264964:-1 // ensembl // 11 // --- /// YDL110C // cdna:known chromosome:SGD1:IV:264512:264964:-1 gene:YDL110C // ensembl // 11 // --- --- No cerevisiae_gene -1.37641490073731 1.03527608573384 -1.1027433837234 -1.34901275024768 -1.2547017551898 Max fold change below threshold 4 1.37641490073731 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775697_at YNR064C.S1 Epoxide hydrolase, member of the alpha/beta hydrolase fold family; may have a role in detoxification of epoxides 1.37583141366234 36.7904853820801 39.5718955993652 --- 9636 // response to toxin // inferred from sequence similarity 5625 // soluble fraction // inferred from direct assay 4301 // epoxide hydrolase activity // inferred from direct assay /// 4301 // epoxide hydrolase activity // inferred from sequence similarity 39.1603393554688 31.3426742553711 42.2382965087891 39.9834518432617 0.0561522990465164 0.0107421996071935 0.0107421996071935 0.00585938012227416 M P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR064C /GEN=FRE4 /DB_XREF=GI:6324392 /SEG=NC_001146:-749133,750005 /DEF=Hypothetical ORF /NOTE=Ynr064cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005347 // YNR064C SGDID:S0005347, Chr XIV from 750006-749134, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020090 // cdna:Genscan chromosome:SGD1:XIV:749134:750006:-1 // ensembl // 11 // --- /// GENEFINDER00000020562 // cdna:GeneFinder chromosome:SGD1:XIV:749134:749877:-1 // ensembl // 11 // --- /// YNR064C // cdna:known chromosome:SGD1:XIV:749134:750006:-1 gene:YNR064C // ensembl // 11 // --- --- No cerevisiae_gene -1.35070112620838 -1.24942559260903 1.37583141366234 1.07859883759895 1.02101903357684 Max fold change below threshold 4 1.37583141366234 Max fold change below threshold MAPPPP No 4 0 MPPP 0 3 1 No No 2 < x = 3
1770513_at YPL033C.S1 Hypothetical protein 1.37577336749882 14.3347311019897 17.7083745002747 --- 6259 // DNA metabolism // inferred from genetic interaction /// 7126 // meiosis // inferred from expression pattern --- --- 15.5105085372925 12.1098861694336 16.5595760345459 19.9062404632568 0.00292969006113708 0.0676269978284836 0.018554700538516 0.00122069998178631 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL033C /GEN=PMA2 /DB_XREF=GI:6325224 /SEG=NC_001148:-487358,488203 /DEF=Hypothetical ORF /NOTE=Ypl033cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA metabolism [goid GO:0006259] [evidence IGI] [pmid 10051619]; go_process: meiosis [goid GO:0007126] [evidence IEP] [pmid 10051619] --- --- --- --- --- --- S0005954 // YPL033C SGDID:S0005954, Chr XVI from 488205-487360, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YPL033C // cdna:known chromosome:SGD1:XVI:487360:488205:-1 gene:YPL033C // ensembl // 11 // --- --- No cerevisiae_gene 1.18099573246273 -1.28081373518129 -1.37577336749882 1.06763591888242 1.28340346903492 Max fold change below threshold 4 1.37577336749882 Max fold change below threshold PPAPPP No 2 0 PAPP 1 3 0 No No 2 < x = 3
1778104_at YNL280C.S1 C-14 sterol reductase, acts in ergosterol biosynthesis; mutants accumulate the abnormal sterol ignosterol (ergosta-8,14 dienol), and are viable under anaerobic growth conditions but inviable on rich medium under aerobic conditions 1.37549075526728 2049.76116943359 2567.16809082031 ERG24 6696 // ergosterol biosynthesis // traceable author statement 5783 // endoplasmic reticulum // traceable author statement 50613 // delta14-sterol reductase activity // traceable author statement 2577.89013671875 1874.16027832031 2225.36206054688 2556.44604492188 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL280C /GEN=ERG24 /DB_XREF=GI:6324049 /SEG=NC_001146:-109093,110409 /DEF=C-14 sterol reductase, acts in ergosterol biosynthesis; mutants accumulate the abnormal sterol ignosterol (ergosta-8,14 dienol), and are viable under anaerobic growth conditions but inviable on rich medium under aerobic conditions /NOTE=Erg24p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS]; go_function: C-14 sterol reductase activity [goid GO:0000251] [evidence TAS]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence TAS] --- --- --- --- --- S0005224 // span:12-34,72-94,107-129,149-171,246-263,278-297,309-328,377-399 // numtm:8 S0005224 // ERG24 SGDID:S0005224, Chr XIV from 110409-109093, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019817 // cdna:Genscan chromosome:SGD1:XIV:109093:110409:-1 // ensembl // 11 // --- /// YNL280C // cdna:known chromosome:SGD1:XIV:109093:110409:-1 gene:YNL280C // ensembl // 11 // --- --- No cerevisiae_gene 1.06325509956494 -1.37549075526728 1.13330504161459 -1.15841380709314 -1.00838824345207 Max fold change below threshold 4 1.37549075526728 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778312_at YKL043W.S1 Transcriptional activator that enhances pseudohyphal growth; regulates expression of FLO11, an adhesin required for pseudohyphal filament formation; similar to StuA, an A. nidulans developmental regulator; potential Cdc28p substrate 1.37539449855368 1963.39947509766 1574.93560791016 PHD1 7124 // pseudohyphal growth // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 3704 // specific RNA polymerase II transcription factor activity // traceable author statement 1520.39208984375 1835.66003417969 2091.13891601563 1629.47912597656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL043W /GEN=PHD1 /DB_XREF=GI:6322808 /SEG=NC_001143:+356393,357493 /DEF=protein similar to StuA of Aspergillus nidulans /NOTE=Phd1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 8114741]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence TAS] [pmid 9456310]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 8114741] --- --- --- --- --- --- S0001526 // PHD1 SGDID:S0001526, Chr XI from 356393-357493, Verified ORF // sgd // 11 // --- /// GENSCAN00000018385 // cdna:Genscan chromosome:SGD1:XI:356411:357493:1 // ensembl // 11 // --- /// GENEFINDER00000023180 // cdna:GeneFinder chromosome:SGD1:XI:356411:357493:1 // ensembl // 11 // --- /// YKL043W // cdna:known chromosome:SGD1:XI:356393:357493:1 gene:YKL043W // ensembl // 11 // --- --- No cerevisiae_gene 1.15394138860279 1.20735963205934 -1.29201020284424 1.37539449855368 1.07174927892714 Max fold change below threshold 4 1.37539449855368 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770737_at YMR294W.S1 Component of the yeast dynactin complex, consisting of Nip100p, Jnm1p, and Arp1p; required for proper nuclear migration and spindle partitioning during mitotic anaphase B 1.37526710425662 300.1845703125 386.297378540039 JNM1 7097 // nuclear migration // inferred from mutant phenotype 5869 // dynactin complex // inferred from direct assay 5200 // structural constituent of cytoskeleton // inferred from physical interaction 355.798950195313 258.712615966797 341.656524658203 416.795806884766 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR294W /GEN=JNM1 /DB_XREF=GI:6323951 /SEG=NC_001145:+856965,858086 /DEF=Component of the yeast dynactin complex, consisting of Nip100p, Jnm1p, and Arp1p; required for proper nuclear migration and spindle partitioning during mitotic anaphase B /NOTE=Jnm1p; go_component: dynactin complex [goid GO:0005869] [evidence IDA] [pmid 9658168]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9658168]; go_process: mitotic anaphase B [goid GO:0000092] [evidence IGI,IMP] [pmid 9658168] --- --- --- --- --- --- S0004908 // JNM1 SGDID:S0004908, Chr XIII from 856965-858086, Verified ORF // sgd // 11 // --- /// GENSCAN00000018961 // cdna:Genscan chromosome:SGD1:XIII:856965:858086:1 // ensembl // 11 // --- /// GENEFINDER00000021961 // cdna:GeneFinder chromosome:SGD1:XIII:857328:858086:1 // ensembl // 11 // --- /// YMR294W // cdna:known chromosome:SGD1:XIII:856965:858086:1 gene:YMR294W // ensembl // 11 // --- --- No cerevisiae_gene -1.37485712008092 -1.37526710425662 1.10552337200506 -1.04139369371405 1.17143630315932 Max fold change below threshold 4 1.37526710425662 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779503_s_at YFL062W.S1 Protein of unknown function, member of a family of conserved, often subtelomerically-encoded proteins /// Protein of unknown function, member of a family of conserved, often subtelomerically-encoded proteins /// Protein of unknown function, member of a family of conserved, often subtelomerically-encoded proteins 1.37503958580896 8206.70483398438 6785.57739257813 COS1 /// COS6 /// COS4 --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 7857.07958984375 10451.5771484375 5961.83251953125 5714.0751953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL062W /GEN=COS4 /DB_XREF=GI:14318457 /SEG=NC_001138:+6426,7565 /DEF=Protein of unknown function, member of a family of conserved, often subtelomerically-encoded proteins /NOTE=Cos4p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 3.59999990463257 S0001832 // span:46-63,69-91,233-255,259-281 // numtm:4 /// S0003527 // span:46-63,69-91,233-251,256-270 // numtm:4 /// S0005280 // span:46-63,73-95,233-255,261-283 // numtm:4 S0001832 // COS4 SGDID:S0001832, Chr VI from 6426-7565, Verified ORF // sgd // 11 // --- /// S0003527 // COS6 SGDID:S0003527, Chr VII from 1082735-1081590, reverse complement, Verified ORF // sgd // 11 // --- /// S0005280 // COS1 SGDID:S0005280, Chr XIV from 8330-9475, Verified ORF // sgd // 11 // --- /// GENSCAN00000023188 // cdna:Genscan chromosome:SGD1:VI:6426:7565:1 // ensembl // 11 // --- /// GENSCAN00000019568 // cdna:Genscan chromosome:SGD1:VII:1081590:1082291:-1 // ensembl // 11 // --- /// GENEFINDER00000021444 // cdna:GeneFinder chromosome:SGD1:VII:1081590:1082735:-1 // ensembl // 11 // --- /// GENEFINDER00000020538 // cdna:GeneFinder chromosome:SGD1:XIV:8330:9475:1 // ensembl // 11 // --- /// YFL062W // cdna:known chromosome:SGD1:VI:6426:7565:1 gene:YFL062W // ensembl // 11 // --- /// YGR295C // cdna:known chromosome:SGD1:VII:1081590:1082735:-1 gene:YGR295C // ensembl // 11 // --- /// YNL336W // cdna:known chromosome:SGD1:XIV:8330:9475:1 gene:YNL336W // ensembl // 11 // --- --- No cerevisiae_gene -1.35946118316631 1.33021143911377 -1.27912549855238 -1.31789673126569 -1.37503958580896 Max fold change below threshold 4 1.37503958580896 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776778_at YMR081C.S1 Serine-rich, hydrophilic protein with similarity to Mbr1p; overexpression suppresses growth defects of hap2, hap3, and hap4 mutants; expression is under glucose control; cotranscribed with NAM7 in a cyp1 mutant 1.37464089583441 2806.5302734375 2169.20043945313 ISF1 9060 // aerobic respiration // inferred from genetic interaction --- --- 2094.39428710938 2734.0205078125 2879.0400390625 2244.00659179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR081C /GEN=ISF1 /DB_XREF=GI:6323727 /SEG=NC_001145:-430078,431094 /DEF=Serine-rich, hydrophilic protein with similarity to Mbr1p; overexpression suppresses growth defects of hap2, hap3, and hap4 mutants; expression is under glucose control; cotranscribed with NAM7 in a cyp1 mutant /NOTE=Isf1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: aerobic respiration [goid GO:0009060] [evidence IGI] [pmid 8208248] --- --- --- --- --- --- S0004686 // ISF1 SGDID:S0004686, Chr XIII from 431094-430078, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018779 // cdna:Genscan chromosome:SGD1:XIII:430078:431094:-1 // ensembl // 11 // --- /// YMR081C // cdna:known chromosome:SGD1:XIII:430078:431094:-1 gene:YMR081C // ensembl // 11 // --- --- No cerevisiae_gene 1.05440874712178 1.3053991431508 1.10332070157049 1.37464089583441 1.07143464132248 Max fold change below threshold 4 1.37464089583441 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777010_at YLL041C.S1 Iron-sulfur protein subunit of succinate dehydrogenase (Sdh1p, Sdh2p, Sdh3p, Sdh4p), which couples the oxidation of succinate to the transfer of electrons to ubiquinone 1.37456742472727 3816.02209472656 2753.31884765625 SDH2 6099 // tricarboxylic acid cycle // traceable author statement /// 6121 // mitochondrial electron transport, succinate to ubiquinone // traceable author statement 5749 // respiratory chain complex II (sensu Eukaryota) // traceable author statement 8177 // succinate dehydrogenase (ubiquinone) activity // traceable author statement 2817.56982421875 3759.1044921875 3872.93969726563 2689.06787109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL041C /GEN=SDH2 /DB_XREF=GI:6322987 /SEG=NC_001144:-53130,53930 /DEF=Yeast succinate dehydrogenase (SDH) is a tetramer of non-equivalent subunits--Sdh1p, Sdh2p, Sdh3p, Sdh4p--that couples the oxidation of succinate to the transfer of electrons to ubiquinone. /NOTE=Sdh2p; go_component: respiratory chain complex II (sensu Eukarya) [goid GO:0005749] [evidence TAS] [pmid 9929002]; go_function: succinate dehydrogenase (ubiquinone) activity [goid GO:0008177] [evidence TAS] [pmid 9929002]; go_process: mitochondrial electron transport, succinate to ubiquinone [goid GO:0006121] [evidence TAS] [pmid 9929002]; go_process: tricarboxylic acid cycle [goid GO:0006099] [evidence TAS] [pmid 9175438] --- --- --- --- scop // a.1.2.Fumarate reductase/Succinate dehydogenase iron-sulfur prot // All alpha proteins; Globin-like; alpha-helical ferredoxin; Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain // 0.0 --- S0003964 // SDH2 SGDID:S0003964, Chr XII from 53930-53130, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017674 // cdna:Genscan chromosome:SGD1:XII:53130:53876:-1 // ensembl // 11 // --- /// GENEFINDER00000024910 // cdna:GeneFinder chromosome:SGD1:XII:53130:53876:-1 // ensembl // 11 // --- /// YLL041C // cdna:known chromosome:SGD1:XII:53130:53930:-1 gene:YLL041C // ensembl // 11 // --- --- No cerevisiae_gene -1.3570441260528 1.33416551379692 1.10929560481514 1.37456742472727 -1.04778680170417 Max fold change below threshold 4 1.37456742472727 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769935_at YLL027W.S1 Mitochondrial matrix protein involved in biogenesis of the iron-sulfur (Fe/S) cluster of Fe/S proteins, isa1 deletion causes loss of mitochondrial DNA and respiratory deficiency; depletion reduces growth on nonfermentable carbon sources 1.37434292520542 1675.16558837891 2050.93896484375 ISA1 6826 // iron ion transport // inferred from genetic interaction /// 6826 // iron ion transport // inferred from sequence similarity 5759 // mitochondrial matrix // inferred from direct assay --- 2053.88403320313 1494.44799804688 1855.88317871094 2047.99389648438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL027W /GEN=ISA1 /DB_XREF=GI:6323001 /SEG=NC_001144:+87402,88154 /DEF=Mitochondrial matrix protein involved in biogenesis of the iron-sulfur (Fe/S) cluster of Fe/S proteins, isa1 deletion causes loss of mitochondrial DNA and respiratory deficiency; depletion reduces growth on nonfermentable carbon sources /NOTE=Isa1p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 10805735]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: iron ion transport [goid GO:0006826] [evidence IGI,ISS] [pmid 10805735] --- --- --- --- --- --- S0003950 // ISA1 SGDID:S0003950, Chr XII from 87402-88154, Verified ORF // sgd // 11 // --- /// GENSCAN00000017698 // cdna:Genscan chromosome:SGD1:XII:87402:88154:1 // ensembl // 11 // --- /// GENEFINDER00000024821 // cdna:GeneFinder chromosome:SGD1:XII:87495:88154:1 // ensembl // 11 // --- /// YLL027W // cdna:known chromosome:SGD1:XII:87402:88154:1 gene:YLL027W // ensembl // 11 // --- --- No cerevisiae_gene 1.02731842977096 -1.37434292520542 -1.1879681060552 -1.10668821010044 -1.002876051891 Max fold change below threshold 4 1.37434292520542 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779663_at YHR174W.S1 Enolase II, a phosphopyruvate hydratase that catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate during glycolysis and the reverse reaction during gluconeogenesis; expression is induced in response to glucose /// Enolase I, a phosphopyruvate hydratase that catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate during glycolysis and the reverse reaction during gluconeogenesis; expression is repressed in response to glucose 1.37424969329448 4427.49560546875 3904.10546875 ENO2 /// ENO1 6094 // gluconeogenesis // inferred from expression pattern /// 6096 // glycolysis // inferred from mutant phenotype 15 // phosphopyruvate hydratase complex // inferred from direct assay /// 5625 // soluble fraction // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4634 // phosphopyruvate hydratase activity // inferred from mutant phenotype 4205.71826171875 4439.919921875 4415.0712890625 3602.49267578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR174W /GEN=ENO2 /DB_XREF=GI:6321968 /SEG=NC_001140:+451325,452638 /DEF=Enolase II, catalyzes the first common step of glycolysis and gluconeogenesis; expression is induced in response to glucose /NOTE=Eno2p; go_component: phosphopyruvate hydratase complex [goid GO:0000015] [evidence IDA] [pmid 6282834]; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 11746603]; go_function: phosphopyruvate hydratase activity [goid GO:0004634] [evidence IMP] [pmid 6282834]; go_process: gluconeogenesis [goid GO:0006094] [evidence TAS]; go_process: glycolysis [goid GO:0006096] [evidence TAS] --- --- --- --- --- --- S0001217 // ENO2 SGDID:S0001217, Chr VIII from 451326-452639, Verified ORF // sgd // 10 // --- /// GENSCAN00000016699 // cdna:Genscan chromosome:SGD1:VIII:451326:452639:1 // ensembl // 10 // --- /// GENEFINDER00000020155 // cdna:GeneFinder chromosome:SGD1:VIII:451326:452639:1 // ensembl // 10 // --- /// YHR174W // cdna:known chromosome:SGD1:VIII:451326:452639:1 gene:YHR174W // ensembl // 10 // --- J03645 // gb // 4 // Cross Hyb Matching Probes No cerevisiae_gene 1.37424969329448 1.05568648339762 -1.3466159307996 1.04977818634437 -1.16744672098651 Max fold change below threshold 4 1.37424969329448 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774832_x_at YOL166W-A.S1 Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /// --- /// Identified by fungal homology and RT-PCR 1.37412137681218 1.45500832796097 1.644207239151 --- --- --- --- 1.83332359790802 1.35350251197815 1.55651414394379 1.45509088039398 0.266845703125 0.466064006090164 0.398925989866257 0.5 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL166W-A /DB_XREF=GI:33438872 /SEG=NC_001147:+585,740 /DEF=Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching /NOTE=Yol166w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028709 // span:26-48 // numtm:1 S0028709 // YOL166W-A SGDID:S0028709, Chr XV from 585-740, Uncharacterized ORF // sgd // 11 // --- /// YOL166W-A // cdna:known chromosome:SGD1:XV:585:740:1 gene:YOL166W-A // ensembl // 11 // --- S0028764 // sgd // 1 // Cross Hyb Matching Probes /// YAL068W-A // ensembl // 1 // Cross Hyb Matching Probes /// YER188C-A // ensembl // 1 // Cross Hyb Matching Probes /// YLL065W // ensembl // 1 // Cross Hyb Matching Probes No cerevisiae_gene 1.24197717762879 -1.35450328439259 1.37412137681218 -1.17783934379348 -1.25993752184855 Max fold change below threshold 0 1.37412137681218 Max fold change below threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772261_at YEL034W.S1 Translation initiation factor eIF-5A, promotes formation of the first peptide bond; similar to and functionally redundant with Anb1p; undergoes an essential hypusination modification; expressed under aerobic conditions 1.37384458169617 7412.72705078125 5785.12866210938 HYP2 6413 // translational initiation // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5840 // ribosome // traceable author statement 3743 // translation initiation factor activity // traceable author statement /// 5515 // protein binding // inferred from physical interaction 6627.3388671875 9104.93359375 5720.5205078125 4942.91845703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL034W /GEN=HYP2 /DB_XREF=GI:6320801 /SEG=NC_001137:+85676,86149 /DEF=Translation initiation factor eIF-5A, promotes formation of the first peptide bond; similar to and functionally redundant with Anb1p; undergoes an essential hypusination modification; expressed under aerobic conditions /NOTE=Hyp2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 9841679]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 14675757]; go_function: translation initiation factor activity [goid GO:0003743] [evidence TAS] [pmid 9841679]; go_process: translational initiation [goid GO:0006413] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0000760 // HYP2 SGDID:S0000760, Chr V from 85676-86149, Verified ORF // sgd // 11 // --- /// D83166 // Saccharomyces cerevisiae mRNA for eukaryotic translation initiation factor 5A, complete cds. // gb // 11 // --- /// GENSCAN00000016775 // cdna:Genscan chromosome:SGD1:V:85676:86149:1 // ensembl // 11 // --- /// GENEFINDER00000019749 // cdna:GeneFinder chromosome:SGD1:V:85676:86149:1 // ensembl // 11 // --- /// YEL034W // cdna:known chromosome:SGD1:V:85676:86149:1 gene:YEL034W // ensembl // 11 // --- YEL034C-A // ensembl // 11 // Negative Strand Matching Probes No cerevisiae_gene -1.24150062455591 1.37384458169617 -1.23743040087056 -1.15852025320713 -1.3407744685248 Max fold change below threshold 4 1.37384458169617 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775904_at YMR136W.S1 Protein containing GATA family zinc finger motifs; similar to Gln3p and Dal80p; expression repressed by leucine 1.37379888203669 1314.71325683594 1072.30639648438 GAT2 6350 // transcription // inferred from sequence similarity 5634 // nucleus // inferred from sequence similarity 3700 // transcription factor activity // inferred from sequence similarity 1046.93469238281 1191.14880371094 1438.27770996094 1097.67810058594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR136W /GEN=GAT2 /DB_XREF=GI:6323785 /SEG=NC_001145:+541198,542880 /DEF=Protein containing GATA family zinc finger motifs; similar to Gln3p and Dal80p; expression repressed by leucine /NOTE=Gat2p; go_component: nucleus [goid GO:0005634] [evidence ISS] [pmid 10392447]; go_function: transcription factor activity [goid GO:0003700] [evidence ISS] [pmid 10392447]; go_process: transcription [goid GO:0006350] [evidence ISS] [pmid 10392447] --- --- --- --- --- --- S0004744 // GAT2 SGDID:S0004744, Chr XIII from 541198-542880, Verified ORF // sgd // 11 // --- /// GENSCAN00000018828 // cdna:Genscan chromosome:SGD1:XIII:541198:542880:1 // ensembl // 11 // --- /// GENEFINDER00000022040 // cdna:GeneFinder chromosome:SGD1:XIII:541198:542880:1 // ensembl // 11 // --- /// YMR136W // cdna:known chromosome:SGD1:XIII:541198:542880:1 gene:YMR136W // ensembl // 11 // --- --- No cerevisiae_gene -1.33543826223547 1.13774890867347 -1.07527363940693 1.37379888203669 1.04846855164159 Max fold change below threshold 4 1.37379888203669 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779832_at YGL080W.S1 The authentic, non-tagged protein was localized to the mitochondria 1.37345907456266 1328.61682128906 1681.89599609375 --- --- 5739 // mitochondrion // inferred from direct assay --- 1526.27282714844 1401.13427734375 1256.09936523438 1837.51916503906 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL080W /GEN=SCY1 /DB_XREF=GI:6321358 /SEG=NC_001139:+358637,359029 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ygl080wp --- --- --- --- --- S0003048 // span:23-45,55-77 // numtm:2 S0003048 // FMP37 SGDID:S0003048, Chr VII from 358639-359031, Uncharacterized ORF // sgd // 11 // --- /// YGL080W // cdna:known chromosome:SGD1:VII:358639:359031:1 gene:YGL080W // ensembl // 11 // --- --- No cerevisiae_gene -1.37345907456266 -1.08931231776152 1.14334299457252 -1.2150892432492 1.20392575452721 Max fold change below threshold 4 1.37345907456266 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777120_at YER048C.S1 Nuclear type II J heat shock protein of the E. coli dnaJ family, contains a leucine zipper-like motif, binds to non-native substrates for presentation to Ssa3p, may function during protein translocation, assembly and disassembly 1.37345015520108 1545.39691162109 1331.0732421875 CAJ1 --- 5634 // nucleus // traceable author statement 30188 // chaperone regulator activity // inferred from sequence similarity 1232.84655761719 1397.54052734375 1693.25329589844 1429.29992675781 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER048C /GEN=CAJ1 /DB_XREF=GI:6320888 /SEG=NC_001137:-246981,248156 /DEF=Homologous to E. coli DnaJ; contains leucine zipper-like motif /NOTE=Caj1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: chaperone regulator activity [goid GO:0030188] [evidence ISS] [pmid 8045411]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 1.00000003137439E-22 --- S0000850 // CAJ1 SGDID:S0000850, Chr V from 248156-246981, reverse complement, Verified ORF // sgd // 11 // --- /// D21164 // Saccharomyces cerevisiae mRNA for CAJ1 (a yeast homolog of DnaJ), complete cds. // gb // 11 // --- /// GENSCAN00000016843 // cdna:Genscan chromosome:SGD1:V:246981:248156:-1 // ensembl // 11 // --- /// GENEFINDER00000019679 // cdna:GeneFinder chromosome:SGD1:V:246981:248156:-1 // ensembl // 11 // --- /// YER048C // cdna:known chromosome:SGD1:V:246981:248156:-1 gene:YER048C // ensembl // 11 // --- --- No cerevisiae_gene -1.03566119252181 1.13358837619248 1.28979227542332 1.37345015520108 1.15934940802392 Max fold change below threshold 4 1.37345015520108 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776123_at YDR167W.S1 Subunit (145 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiation and in chromatin modification 1.37321231489164 848.485015869141 1111.98596191406 TAF10 114 // G1-specific transcription in mitotic cell cycle // inferred from physical interaction /// 6325 // establishment and/or maintenance of chromatin architecture // inferred from physical interaction /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 6473 // protein amino acid acetylation // inferred from physical interaction /// 16568 // chromatin modification // traceable author statement /// 16573 // histone acetylation // traceable author statement 124 // SAGA complex // inferred from direct assay /// 5669 // transcription factor TFIID complex // traceable author statement /// 5669 // transcription factor TFIID complex // inferred from direct assay /// 46695 // SLIK (SAGA-like) complex // inferred from physical interaction 16251 // general RNA polymerase II transcription factor activity // traceable author statement 1057.94836425781 770.418640136719 926.551391601563 1166.02355957031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR167W /GEN=TAF10 /DB_XREF=GI:6320371 /SEG=NC_001136:+789443,790063 /DEF=Subunit (145 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiation and in chromatin modification /NOTE=Taf10p; go_component: SAGA complex [goid GO:0000124] [evidence IDA] [pmid 9674426]; go_component: transcription factor TFIID complex [goid GO:0005669] [evidence TAS] [pmid 9118213]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9118213]; go_process: G1-specific transcription in mitotic cell cycle [goid GO:0000114] [evidence IPI] [pmid 9118213]; go_process: chromatin modification [goid GO:0016568] [evidence TAS] [pmid 10839822]; go_process: establishment and/or maintenance of chromatin architecture [goid GO:0006325] [evidence IPI] [pmid 9674426]; go_process: histone acetylation [goid GO:0016573] [evidence TAS] [pmid 10839822]; go_process: protein amino acid acetylation [goid GO:0006473] [evidence IPI] [pmid 9674426]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 9118213] --- --- --- --- --- --- S0002574 // TAF10 SGDID:S0002574, Chr IV from 789444-790064, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023576 // cdna:GeneFinder chromosome:SGD1:IV:789444:790064:1 // ensembl // 11 // --- /// GENSCAN00000025222 // cdna:Genscan chromosome:SGD1:IV:789444:790064:1 // ensembl // 11 // --- /// YDR167W // cdna:known chromosome:SGD1:IV:789444:790064:1 gene:YDR167W // ensembl // 11 // --- --- No cerevisiae_gene -1.03919652472157 -1.37321231489164 1.23209710532701 -1.14181293541541 1.10215545386123 Max fold change below threshold 4 1.37321231489164 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780151_at YGL161C.S1 Protein that interacts with Rab GTPases; computational analysis of large-scale protein-protein interaction data suggests a possible role in vesicle-mediated transport 1.37302607476107 2305.94287109375 2518.7255859375 YIP5 16192 // vesicle-mediated transport // RCA 16020 // membrane // inferred from sequence similarity 17137 // Rab GTPase binding // inferred from physical interaction 2581.5888671875 2397.55249023438 2214.33325195313 2455.8623046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL161C /GEN=YIP5 /DB_XREF=GI:6321277 /SEG=NC_001139:-199214,200146 /DEF=Protein that interacts with Rab GTPases; computational analysis of large-scale protein-protein interaction data suggests a possible role in vesicle-mediated transport /NOTE=Yip5p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 11943201]; go_function: Rab interactor activity [goid GO:0017137] [evidence IPI] [pmid 11943201]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence TAS] [pmid 14566057] --- --- --- --- --- S0003129 // span:137-159,180-202,222-241,287-309 // numtm:4 S0003129 // YIP5 SGDID:S0003129, Chr VII from 200148-199216, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019227 // cdna:Genscan chromosome:SGD1:VII:199216:200148:-1 // ensembl // 11 // --- /// GENEFINDER00000021503 // cdna:GeneFinder chromosome:SGD1:VII:199216:200148:-1 // ensembl // 11 // --- /// YGL161C // cdna:known chromosome:SGD1:VII:199216:200148:-1 gene:YGL161C // ensembl // 11 // --- --- No cerevisiae_gene -1.37302607476107 -1.07676010335654 1.04501404741433 -1.16585381396881 -1.0511944673201 Max fold change below threshold 4 1.37302607476107 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779549_at YOR236W.S1 Dihydrofolate reductase, part of the dTTP biosynthetic pathway, involved in folate metabolism, possibly required for mitochondrial function 1.37238834092755 462.706176757813 458.130081176758 DFR1 6760 // folic acid and derivative metabolism // inferred from mutant phenotype 5829 // cytosol // traceable author statement 4146 // dihydrofolate reductase activity // inferred from mutant phenotype 425.642578125 490.618469238281 434.793884277344 490.617584228516 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR236W /GEN=DFR1 /DB_XREF=GI:6324810 /SEG=NC_001147:+780906,781541 /DEF=Dihydrofolate reductase, part of the dTTP biosynthetic pathway, involved in folate metabolism, possibly required for mitochondrial function /NOTE=Dfr1p; go_component: cytosol [goid GO:0005829] [evidence TAS] [pmid 7913473]; go_function: dihydrofolate reductase activity [goid GO:0004146] [evidence IMP] [pmid 1427091]; go_process: folic acid and derivative metabolism [goid GO:0006760] [evidence IMP] [pmid 1427091] --- --- --- --- --- --- S0005762 // DFR1 SGDID:S0005762, Chr XV from 780906-781541, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022737 // cdna:GeneFinder chromosome:SGD1:XV:780906:781541:1 // ensembl // 11 // --- /// YOR236W // cdna:known chromosome:SGD1:XV:780906:781541:1 gene:YOR236W // ensembl // 11 // --- --- No cerevisiae_gene -1.02228144473616 1.1526536452239 1.37238834092755 1.02149997820391 1.15265156599168 Max fold change below threshold 4 1.37238834092755 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771520_at YNL149C.S1 Protein required for cell viability 1.37227884509464 668.517639160156 632.457763671875 --- --- 5635 // nuclear membrane // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay --- 622.776611328125 606.256774902344 730.778503417969 642.138916015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL149C /GEN=RPC31 /DB_XREF=GI:6324180 /SEG=NC_001146:-349367,349756 /DEF=Protein required for cell viability /NOTE=Ynl149cp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14690591]; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005093 // span:23-42 // numtm:1 S0005093 // YNL149C SGDID:S0005093, Chr XIV from 349756-349367, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019918 // cdna:Genscan chromosome:SGD1:XIV:349367:349756:-1 // ensembl // 11 // --- /// GENEFINDER00000020424 // cdna:GeneFinder chromosome:SGD1:XIV:349367:349756:-1 // ensembl // 11 // --- /// YNL149C // cdna:known chromosome:SGD1:XIV:349367:349756:-1 gene:YNL149C // ensembl // 11 // --- YNL150W // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene 1.37227884509464 -1.02724891021373 -1.26491285910872 1.17341995528625 1.03109028877338 Max fold change below threshold 4 1.37227884509464 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774826_at YKL056C.S1 Hypothetical protein 1.37212453657512 7313.36694335938 7047.3076171875 --- --- 5737 // cytoplasm // inferred from direct assay --- 8115.0078125 8712.5419921875 5914.19189453125 5979.607421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL056C /GEN=NUP120 /DB_XREF=GI:6322794 /SEG=NC_001143:-334057,334560 /DEF=Hypothetical ORF /NOTE=Ykl056cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001539 // YKL056C SGDID:S0001539, Chr XI from 334560-334057, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018375 // cdna:Genscan chromosome:SGD1:XI:334057:334560:-1 // ensembl // 11 // --- /// GENEFINDER00000023013 // cdna:GeneFinder chromosome:SGD1:XI:334057:334560:-1 // ensembl // 11 // --- /// YKL056C // cdna:known chromosome:SGD1:XI:334057:334560:-1 gene:YKL056C // ensembl // 11 // --- --- No cerevisiae_gene -1.16024352948954 1.07363322297325 -1.2915806948836 -1.37212453657512 -1.3571138103169 Max fold change below threshold 4 1.37212453657512 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773244_at YIR002C.S1 Member of the DEAH family of helicases, functions in an error-free DNA damage bypass pathway that involves homologous recombination, mutations confer a mutator phenotype 1.37138278205173 575.938842773438 794.850280761719 MPH1 6281 // DNA repair // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 3724 // RNA helicase activity // inferred from sequence similarity /// 3724 // RNA helicase activity // inferred from mutant phenotype /// 43138 // 3' to 5' DNA helicase activity // inferred from direct assay 776.530517578125 585.638610839844 566.239074707031 813.170043945313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR002C /GEN=MPH1 /DB_XREF=GI:6322192 /SEG=NC_001141:-357412,360393 /DEF=Member of the DEAH family of helicases, functions in an error-free DNA damage bypass pathway that involves homologous recombination, mutations confer a mutator phenotype /NOTE=Mph1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10880470]; go_function: RNA helicase activity [goid GO:0003724] [evidence IMP,ISS] [pmid 10880470]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 10880470] --- --- --- --- --- --- S0001441 // MPH1 SGDID:S0001441, Chr IX from 360393-357412, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016477 // cdna:Genscan chromosome:SGD1:IX:357412:360393:-1 // ensembl // 11 // --- /// GENEFINDER00000019025 // cdna:GeneFinder chromosome:SGD1:IX:357412:360393:-1 // ensembl // 11 // --- /// YIR002C // cdna:known chromosome:SGD1:IX:357412:360393:-1 gene:YIR002C // ensembl // 11 // --- --- No cerevisiae_gene -1.17972042055976 -1.3259551252342 -1.2397506754343 -1.37138278205173 1.04718362709229 Max fold change below threshold 4 1.37138278205173 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774600_at YGL173C.S1 5'-3' exonuclease involved in mRNA decay, evolutionarily conserved component of cytoplasmic processing (P) bodies, plays a role in microtubule-mediated processes, filamentous growth, and ribosomal RNA maturation 1.37129629173657 1098.06762695313 1100.998046875 KEM1 6365 // 35S primary transcript processing // traceable author statement /// 6402 // mRNA catabolism // traceable author statement /// 30447 // filamentous growth // inferred from mutant phenotype /// 43330 // response to exogenous dsRNA // inferred from mutant phenotype 932 // cytoplasmic mRNA processing body // inferred from direct assay /// 932 // cytoplasmic mRNA processing body // inferred from mutant phenotype /// 5737 // cytoplasm // traceable author statement 150 // recombinase activity // traceable author statement /// 4534 // 5'-3' exoribonuclease activity // traceable author statement /// 4536 // deoxyribonuclease activity // traceable author statement 1104.74597167969 932.955688476563 1263.17956542969 1097.25012207031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL173C /GEN=KEM1 /DB_XREF=GI:6321265 /SEG=NC_001139:-175531,180117 /DEF=5'-3' exonuclease involved in mRNA decay, evolutionarily conserved component of cytoplasmic processing (P) bodies, plays a role in microtubule-mediated processes, filamentous growth, and ribosomal RNA maturation /NOTE=Kem1p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 10690410]; go_component: cytoplasmic mRNA processing body [goid GO:0000932] [evidence IDA,IMP] [pmid 12730603]; go_function: 5'-3' exoribonuclease activity [goid GO:0004534] [evidence TAS] [pmid 10690410]; go_function: deoxyribonuclease activity [goid GO:0004536] [evidence TAS] [pmid 8970740]; go_function: recombinase activity [goid GO:0000150] [evidence TAS] [pmid 8970740]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: filamentous growth [goid GO:0030447] [evidence IMP] [pmid 12423748]; go_process: mRNA catabolism [goid GO:0006402] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0003141 // KEM1 SGDID:S0003141, Chr VII from 180119-175533, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019219 // cdna:Genscan chromosome:SGD1:VII:175533:180119:-1 // ensembl // 11 // --- /// GENEFINDER00000021525 // cdna:GeneFinder chromosome:SGD1:VII:175533:180119:-1 // ensembl // 11 // --- /// YGL173C // cdna:known chromosome:SGD1:VII:175533:180119:-1 gene:YGL173C // ensembl // 11 // --- --- No cerevisiae_gene -1.37129629173657 -1.18413552253874 -1.10811271624156 1.14341178679214 -1.00683148669442 Max fold change below threshold 4 1.37129629173657 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777939_at YGR105W.S1 Integral membrane protein that is required for vacuolar H+-ATPase (V-ATPase) function, although not an actual component of the V-ATPase complex; functions in the assembly of the V-ATPase; localized to the yeast endoplasmic reticulum (ER) 1.37125217715753 1071.64840698242 1416.78002929688 VMA21 6461 // protein complex assembly // inferred from mutant phenotype /// 6461 // protein complex assembly // inferred from physical interaction 5783 // endoplasmic reticulum // traceable author statement /// 5789 // endoplasmic reticulum membrane // inferred from direct assay --- 1342.73583984375 1164.09265136719 979.204162597656 1490.82421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR105W /GEN=VMA21 /DB_XREF=GI:6321542 /SEG=NC_001139:+698601,698834 /DEF=Protein involved in vacuolar H-ATPase assembly or function. Required for the biogenesis of a functional vacuolar ATPase (V-ATPase), but not part of the final enzyme complex. /NOTE=Vma21p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS] [pmid 9660861]; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 9660861]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP,IPI] [pmid 9660861] --- --- --- --- --- S0003337 // span:13-35,39-61 // numtm:2 S0003337 // VMA21 SGDID:S0003337, Chr VII from 698603-698836, Verified ORF // sgd // 11 // --- /// YGR105W // cdna:known chromosome:SGD1:VII:698603:698836:1 gene:YGR105W // ensembl // 11 // --- --- No cerevisiae_gene 1.20379588810305 -1.15346131449825 1.23841967575092 -1.37125217715753 1.11028854262465 Max fold change below threshold 4 1.37125217715753 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779277_at YBR182C.S1 Putative transcription factor involved in regulating the response to osmotic stress; member of the MADS-box family of transcription factors 1.37114547929795 1663.76965332031 1339.86895751953 SMP1 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence similarity /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 47484 // regulation of response to osmotic stress // inferred from mutant phenotype /// 47484 // regulation of response to osmotic stress // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3700 // transcription factor activity // inferred from sequence similarity /// 3700 // transcription factor activity // inferred from physical interaction /// 8301 // DNA bending activity // inferred from direct assay 1329.65905761719 1681.68286132813 1645.8564453125 1350.07885742188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR182C /GEN=SMP1 /DB_XREF=GI:6319659 /SEG=NC_001134:-593463,594821 /DEF=Second MEF2-like Protein 1Transcription factor of the MADS (Mcm1p, Agamous, Deficiens, SRF) box family; closely related to RLM1 /NOTE=Smp1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12482976]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12482976]; go_function: DNA bending activity [goid GO:0008301] [evidence IDA] [pmid 10064699]; go_function: transcription factor activity [goid GO:0003700] [evidence IPI,ISS] [pmid 9121433]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IGI,IMP,ISS] [pmid 12482976] --- --- --- --- --- --- S0000386 // SMP1 SGDID:S0000386, Chr II from 594859-593501, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021287 // cdna:Genscan chromosome:SGD1:II:593501:594859:-1 // ensembl // 11 // --- /// GENEFINDER00000022411 // cdna:GeneFinder chromosome:SGD1:II:593501:594859:-1 // ensembl // 11 // --- /// YBR182C // cdna:known chromosome:SGD1:II:593501:594859:-1 gene:YBR182C // ensembl // 11 // --- --- No cerevisiae_gene 1.37114547929795 1.26474741904273 -1.06792437661493 1.23780335709663 1.01535716971032 Max fold change below threshold 4 1.37114547929795 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769745_at YMR178W.S1 Hypothetical protein 1.37097816340104 817.768829345703 995.298461914063 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 918.327514648438 857.177612304688 778.360046386719 1072.26940917969 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR178W /GEN=MMT1 /DB_XREF=GI:6323832 /SEG=NC_001145:+618478,619302 /DEF=Hypothetical ORF /NOTE=Ymr178wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004790 // YMR178W SGDID:S0004790, Chr XIII from 618478-619302, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018863 // cdna:Genscan chromosome:SGD1:XIII:618478:619302:1 // ensembl // 11 // --- /// YMR178W // cdna:known chromosome:SGD1:XIII:618478:619302:1 gene:YMR178W // ensembl // 11 // --- GENEFINDER00000022074 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.37097816340104 -1.07133866011659 1.35809076745139 -1.17982355198147 1.16763288922056 Max fold change below threshold 4 1.37097816340104 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773978_at YPR004C.S1 Hypothetical protein 1.37032604659168 2204.67883300781 1718.29742431641 --- --- 5739 // mitochondrion // inferred from direct assay 9055 // electron carrier activity // non-traceable author statement 1641.92932128906 2159.37915039063 2249.978515625 1794.66552734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR004C /GEN=PDH1 /DB_XREF=GI:6325261 /SEG=NC_001148:-564002,565036 /DEF=Hypothetical ORF /NOTE=Ypr004cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14576278]; go_function: electron carrier activity [goid GO:0009055] [evidence NAS] [pmid 11502169]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006208 // YPR004C SGDID:S0006208, Chr XVI from 565038-564004, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017188 // cdna:Genscan chromosome:SGD1:XVI:564004:564477:-1 // ensembl // 10 // --- /// GENEFINDER00000020904 // cdna:GeneFinder chromosome:SGD1:XVI:564004:564477:-1 // ensembl // 10 // --- /// YPR004C // cdna:known chromosome:SGD1:XVI:564004:565038:-1 gene:YPR004C // ensembl // 11 // --- --- No cerevisiae_gene -1.04978645543177 1.31514744416362 1.16553090047087 1.37032604659168 1.09302239997443 Max fold change below threshold 4 1.37032604659168 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779479_at YBR043C.S1 Multidrug transporter required for resistance to quinidine, barban, cisplatin, and bleomycin; member of the major facilitator superfamily of transporters conferring multiple drug resistance (MFS-MDR) 1.37027247139301 778.195831298828 787.173675537109 QDR3 6855 // multidrug transport // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay /// 5887 // integral to plasma membrane // inferred from sequence similarity 15559 // multidrug efflux pump activity // inferred from mutant phenotype /// 15559 // multidrug efflux pump activity // inferred from sequence similarity 771.430114746094 704.666381835938 851.725280761719 802.917236328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR043C /GEN=FAT1 /DB_XREF=GI:6319517 /SEG=NC_001134:-321838,323907 /DEF=Protein of unknown function, may have a role in drug resistance /NOTE=Ybr043cp --- --- --- --- --- S0000247 // span:109-131,141-163,176-194,199-221,234-256,266-283,470-492,512-534,555-577,587-609,620-642,646-668 // numtm:12 S0000247 // QDR3 SGDID:S0000247, Chr II from 323945-321876, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021174 // cdna:Genscan chromosome:SGD1:II:321876:323945:-1 // ensembl // 11 // --- /// GENEFINDER00000022266 // cdna:GeneFinder chromosome:SGD1:II:321876:323945:-1 // ensembl // 11 // --- /// YBR043C // cdna:known chromosome:SGD1:II:321876:323945:-1 gene:YBR043C // ensembl // 11 // --- --- No cerevisiae_gene -1.37027247139301 -1.09474516541602 -1.00480208339379 1.1040861180822 1.04081655743034 Max fold change below threshold 4 1.37027247139301 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775965_at YDR232W.S1 5-aminolevulinate synthase, catalyzes the first step in the heme biosynthetic pathway; an N-terminal signal sequence is required for localization to the mitochondrial matrix; expression is regulated by Hap2p-Hap3p 1.36978120390897 3484.05554199219 2777.37548828125 HEM1 6783 // heme biosynthesis // inferred from mutant phenotype 5759 // mitochondrial matrix // inferred from direct assay 3870 // 5-aminolevulinate synthase activity // inferred from direct assay 2816.638671875 3111.62377929688 3856.4873046875 2738.1123046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR232W /GEN=HEM1 /DB_XREF=GI:6320438 /SEG=NC_001136:+927444,929090 /DEF=5-aminolevulinate synthase, catalyzes the first step in the heme biosynthetic pathway; an N-terminal signal sequence is required for localization to the mitochondrial matrix; expression is regulated by Hap2p-Hap3p /NOTE=Hem1p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 3023841]; go_function: 5-aminolevulinate synthase activity [goid GO:0003870] [evidence IDA] [pmid 7035824]; go_process: heme biosynthesis [goid GO:0006783] [evidence IMP] [pmid 7035824] --- --- --- --- --- --- S0002640 // HEM1 SGDID:S0002640, Chr IV from 927446-929092, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023420 // cdna:GeneFinder chromosome:SGD1:IV:927446:929092:1 // ensembl // 11 // --- /// GENSCAN00000025279 // cdna:Genscan chromosome:SGD1:IV:927446:929092:1 // ensembl // 11 // --- /// YDR232W // cdna:known chromosome:SGD1:IV:927446:929092:1 gene:YDR232W // ensembl // 11 // --- --- No cerevisiae_gene 1.36978120390897 1.10472948140895 -1.18822330575254 1.36918069868021 -1.02867901621605 Max fold change below threshold 4 1.36978120390897 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775004_at YER080W.S1 The authentic, non-tagged protein was localized to the mitochondria 1.36965760138222 1532.30053710938 1397.14758300781 --- --- 5739 // mitochondrion // inferred from direct assay --- 1408.95166015625 1499.62060546875 1564.98046875 1385.34350585938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER080W /GEN=PTP3 /DB_XREF=GI:6320924 /SEG=NC_001137:+319959,321842 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Yer080wp --- --- --- --- --- --- S0000882 // FMP29 SGDID:S0000882, Chr V from 319959-321842, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016869 // cdna:Genscan chromosome:SGD1:V:319959:321842:1 // ensembl // 11 // --- /// GENEFINDER00000019689 // cdna:GeneFinder chromosome:SGD1:V:320256:321842:1 // ensembl // 11 // --- /// YER080W // cdna:known chromosome:SGD1:V:319959:321842:1 gene:YER080W // ensembl // 11 // --- --- No cerevisiae_gene -1.36965760138222 1.06435206251323 1.10812005962157 1.11074106586201 -1.01704137219182 Max fold change below threshold 4 1.36965760138222 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777342_at YCR084C.S1 General repressor of transcription, forms complex with Cyc8p, involved in the establishment of repressive chromatin structure through interactions with histones H3 and H4, appears to enhance expression of some genes 1.36954809509945 1921.41101074219 1810.40032958984 TUP1 16481 // negative regulation of transcription // inferred from mutant phenotype /// 16481 // negative regulation of transcription // inferred from direct assay /// 16481 // negative regulation of transcription // inferred from physical interaction /// 16584 // nucleosome spacing // inferred from direct assay 5634 // nucleus // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay 16565 // general transcriptional repressor activity // inferred from mutant phenotype /// 16565 // general transcriptional repressor activity // inferred from physical interaction /// 16565 // general transcriptional repressor activity // inferred from direct assay 1743.73889160156 1454.68774414063 2388.13427734375 1877.06176757813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR084C /GEN=TUP1 /DB_XREF=GI:6319926 /SEG=NC_001135:-260307,262448 /DEF=General repressor of transcription (with Cyc8p), mediates glucose repression; exhibits similarity to beta subunits of G proteins /NOTE=Tup1p; go_component: nucleus [goid GO:0005634] [evidence IDA,IPI] [pmid 1739976]; go_function: general transcriptional repressor activity [goid GO:0016565] [evidence IDA,IMP,IPI] [pmid 1739976]; go_process: negative regulation of transcription [goid GO:0016481] [evidence IDA,IMP,IPI] [pmid 1739976] --- --- --- --- --- --- S0000680 // TUP1 SGDID:S0000680, Chr III from 262448-260307, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022518 // cdna:Genscan chromosome:SGD1:III:260307:261227:-1 // ensembl // 11 // --- /// GENEFINDER00000023323 // cdna:GeneFinder chromosome:SGD1:III:260307:262448:-1 // ensembl // 11 // --- /// YCR084C // cdna:known chromosome:SGD1:III:260307:262448:-1 gene:YCR084C // ensembl // 11 // --- --- No cerevisiae_gene 1.20630976801838 -1.19870322591581 -1.10404394377632 1.36954809509945 1.076458050353 Max fold change below threshold 4 1.36954809509945 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778557_at YGL011C.S1 Alpha subunit of the 20S core complex of the 26S proteasome involved in the degradation of ubiquitinated substrates; essential for growth; detected in the mitochondria 1.36914895046006 2221.60961914063 1804.25836181641 SCL1 6511 // ubiquitin-dependent protein catabolism // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 19773 // proteasome core complex, alpha-subunit complex (sensu Eukaryota) // traceable author statement /// 19773 // proteasome core complex, alpha-subunit complex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement 1772.10388183594 2016.94506835938 2426.27416992188 1836.41284179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL011C /GEN=SCL1 /DB_XREF=GI:6321427 /SEG=NC_001139:-474492,475250 /DEF=Proteasome subunit YC7alpha/Y8 (protease yscE subunit 7) /NOTE=Scl1p; go_component: proteasome core complex, alpha-subunit complex (sensu Eukarya) [goid GO:0019773] [evidence TAS] [pmid 8982460]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 10872471]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10872471] --- --- --- --- --- --- S0002979 // SCL1 SGDID:S0002979, Chr VII from 475252-474494, reverse complement, Verified ORF // sgd // 11 // --- /// M55440 // S.cerevisiae yeast proteasome YC7-alpha mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000019332 // cdna:Genscan chromosome:SGD1:VII:474494:475252:-1 // ensembl // 11 // --- /// GENEFINDER00000021446 // cdna:GeneFinder chromosome:SGD1:VII:474494:475252:-1 // ensembl // 11 // --- /// YGL011C // cdna:known chromosome:SGD1:VII:474494:475252:-1 gene:YGL011C // ensembl // 11 // --- --- No cerevisiae_gene -1.04122011115901 1.13816412741547 1.10298755086682 1.36914895046006 1.03628961068259 Max fold change below threshold 4 1.36914895046006 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776441_at YDR408C.S1 Phosphoribosyl-glycinamide transformylase, catalyzes a step in the 'de novo' purine nucleotide biosynthetic pathway 1.36904767274443 1343.14996337891 1628.96807861328 ADE8 6164 // purine nucleotide biosynthesis // traceable author statement /// 6189 // 'de novo' IMP biosynthesis // traceable author statement /// 46084 // adenine biosynthesis // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4644 // phosphoribosylglycinamide formyltransferase activity // traceable author statement 1569.67700195313 1207.64538574219 1478.65454101563 1688.25915527344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR408C /GEN=ADE8 /DB_XREF=GI:6320616 /SEG=NC_001136:-1288203,1288847 /DEF=Phosphoribosyl-glycinamide transformylase, catalyzes a step in the 'de novo' purine nucleotide biosynthetic pathway /NOTE=Ade8p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: phosphoribosylglycinamide formyltransferase activity [goid GO:0004644] [evidence TAS]; go_process: adenine biosynthesis [goid GO:0046084] [evidence TAS] [pmid 8939809]; go_process: purine nucleotide biosynthesis [goid GO:0006164] [evidence TAS] --- --- --- --- --- --- S0002816 // ADE8 SGDID:S0002816, Chr IV from 1288849-1288205, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023534 // cdna:GeneFinder chromosome:SGD1:IV:1288205:1288849:-1 // ensembl // 11 // --- /// GENSCAN00000025424 // cdna:Genscan chromosome:SGD1:IV:1288205:1288849:-1 // ensembl // 11 // --- /// YDR408C // cdna:known chromosome:SGD1:IV:1288205:1288849:-1 gene:YDR408C // ensembl // 11 // --- --- No cerevisiae_gene -1.02041529877721 -1.29978304930006 1.36904767274443 -1.06155762445702 1.07554557604702 Max fold change below threshold 4 1.36904767274443 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771429_at YLR208W.S1 Component of both the Nup84 nuclear pore sub-complex and of the COPII complex (Sar1p, Sec13p, Sec16p, Sec23p, Sec24p, Sec31p, Sfb2p, and Sfb3p) which is important for the formation of ER to Golgi transport vesicles 1.36854627848123 1493.79467773438 1719.85711669922 SEC13 6888 // ER to Golgi transport // traceable author statement /// 6900 // vesicle budding // inferred from mutant phenotype /// 6999 // nuclear pore organization and biogenesis // inferred from curator /// 6999 // nuclear pore organization and biogenesis // traceable author statement /// 30433 // ER-associated protein catabolism // inferred from mutant phenotype 5643 // nuclear pore // traceable author statement /// 5643 // nuclear pore // inferred from genetic interaction /// 5643 // nuclear pore // inferred from physical interaction /// 5737 // cytoplasm // traceable author statement /// 19898 // extrinsic to membrane // inferred from direct assay /// 30127 // COPII vesicle coat // traceable author statement 5198 // structural molecule activity // inferred from genetic interaction /// 5198 // structural molecule activity // inferred from physical interaction /// 5198 // structural molecule activity // inferred from direct assay 1679.16101074219 1226.96691894531 1760.62243652344 1760.55322265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR208W /GEN=SEC13 /DB_XREF=GI:6323237 /SEG=NC_001144:+559553,560446 /DEF=cytoplasmic protein involved in release of transport vesicles from the ER /NOTE=Sec13p; go_component: COPII vesicle coat [goid GO:0030127] [evidence TAS] [pmid 11252894]; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 8432727]; go_component: extrinsic to plasma membrane [goid GO:0019897] [evidence TAS] [pmid 8432727]; go_component: nuclear pore [goid GO:0005643] [evidence TAS] [pmid 11343909]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence TAS] [pmid 11252894]; go_process: ER-associated protein catabolism [goid GO:0030433] [evidence IMP] [pmid 12538638]; go_process: vesicle budding [goid GO:0006900] [evidence IMP] [pmid 8432727] --- --- --- --- --- --- S0004198 // SEC13 SGDID:S0004198, Chr XII from 559553-560446, Verified ORF // sgd // 11 // --- /// GENSCAN00000017980 // cdna:Genscan chromosome:SGD1:XII:559553:560446:1 // ensembl // 11 // --- /// GENEFINDER00000024735 // cdna:GeneFinder chromosome:SGD1:XII:559553:560446:1 // ensembl // 11 // --- /// YLR208W // cdna:known chromosome:SGD1:XII:559553:560446:1 gene:YLR208W // ensembl // 11 // --- --- No cerevisiae_gene 1.06645513233908 -1.36854627848123 1.13740956740292 1.04851317131598 1.04847195200065 Max fold change below threshold 4 1.36854627848123 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778046_at YBR229C.S1 Glucosidase II catalytic subunit required for normal cell wall synthesis; mutations in rot2 suppress tor2 mutations, and are synthetically lethal with rot1 mutations 1.36826847610606 207.448715209961 197.713478088379 ROT2 9272 // cell wall biosynthesis (sensu Fungi) // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from sequence similarity 4558 // alpha-glucosidase activity // inferred from direct assay 190.508926391602 194.642211914063 220.255218505859 204.918029785156 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR229C /GEN=ROT2 /DB_XREF=GI:6319706 /SEG=NC_001134:-676314,679178 /DEF=Glucosidase II catalytic subunit required for normal cell wall synthesis; mutations in rot2 suppress tor2 mutations, and are synthetically lethal with rot1 mutations /NOTE=Rot2p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence ISS] [pmid 8910335]; go_function: alpha-glucosidase activity [goid GO:0004558] [evidence IDA] [pmid 9584169]; go_process: cell wall biosynthesis (sensu Fungi) [goid GO:0009272] [evidence IMP] [pmid 9430631] --- --- --- --- --- --- S0000433 // ROT2 SGDID:S0000433, Chr II from 679216-676352, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021321 // cdna:Genscan chromosome:SGD1:II:676352:679216:-1 // ensembl // 11 // --- /// GENEFINDER00000022291 // cdna:GeneFinder chromosome:SGD1:II:676352:679216:-1 // ensembl // 11 // --- /// YBR229C // cdna:known chromosome:SGD1:II:676352:679216:-1 gene:YBR229C // ensembl // 11 // --- --- No cerevisiae_gene 1.36826847610606 1.02169602023773 1.12502321750252 1.15614119861824 1.07563479395152 Max fold change below threshold 4 1.36826847610606 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778189_at YMR120C.S1 Enzyme of 'de novo' purine biosynthesis containing both 5-aminoimidazole-4-carboxamide ribonucleotide transformylase and inosine monophosphate cyclohydrolase activities, isozyme of Ade16p; ade16 ade17 mutants require adenine and histidine 1.3681305715613 2781.53588867188 2257.14099121094 ADE17 6164 // purine nucleotide biosynthesis // inferred from direct assay /// 6164 // purine nucleotide biosynthesis // inferred from mutant phenotype /// 6189 // 'de novo' IMP biosynthesis // inferred from mutant phenotype /// 6189 // 'de novo' IMP biosynthesis // inferred from direct assay 5829 // cytosol // inferred from direct assay 3937 // IMP cyclohydrolase activity // inferred from direct assay /// 4643 // phosphoribosylaminoimidazolecarboxamide formyltransferase activity // inferred from direct assay 2247.1513671875 3074.396484375 2488.67529296875 2267.13061523438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR120C /GEN=ADE17 /DB_XREF=GI:6323768 /SEG=NC_001145:-507501,509279 /DEF=Enzyme of 'de novo' purine biosynthesis containing both 5-aminoimidazole-4-carboxamide ribonucleotide transformylase and inosine monophosphate cyclohydrolase activities, isozyme of Ade16p; ade16 ade17 mutants require adenine and histidine /NOTE=Ade17p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 10877846]; go_function: IMP cyclohydrolase activity [goid GO:0003937] [evidence IDA] [pmid 10877846]; go_function: phosphoribosylaminoimidazolecarboxamide formyltransferase activity [goid GO:0004643] [evidence IDA] [pmid 10877846]; go_process: 'de novo' IMP biosynthesis [goid GO:0006189] [evidence IDA,IMP] [pmid 10877846]; go_process: purine nucleotide biosynthesis [goid GO:0006164] [evidence IDA,IMP] [pmid 10877846] --- --- --- --- --- --- S0004727 // ADE17 SGDID:S0004727, Chr XIII from 509279-507501, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018814 // cdna:Genscan chromosome:SGD1:XIII:507501:509279:-1 // ensembl // 11 // --- /// GENEFINDER00000021810 // cdna:GeneFinder chromosome:SGD1:XIII:507501:509279:-1 // ensembl // 11 // --- /// YMR120C // cdna:known chromosome:SGD1:XIII:507501:509279:-1 gene:YMR120C // ensembl // 11 // --- --- No cerevisiae_gene 1.18156113882029 1.3681305715613 1.33593920775565 1.10748004309275 1.00889092223097 Max fold change below threshold 4 1.3681305715613 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778472_at YKR001C.S1 GTPase required for vacuolar protein sorting, functions in actin cytoskeleton organization via its interaction with Sla1p; required for late Golgi-retention of some proteins including Kex2p; involved in regulating peroxisome biogenesis 1.36803384382353 1614.34173583984 1323.96942138672 VPS1 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 7031 // peroxisome organization and biogenesis // inferred from genetic interaction /// 7031 // peroxisome organization and biogenesis // inferred from mutant phenotype /// 7031 // peroxisome organization and biogenesis // inferred from direct assay /// 7034 // vacuolar transport // inferred from mutant phenotype /// 30036 // actin cytoskeleton organization and biogenesis // inferred from genetic interaction /// 30036 // actin cytoskeleton organization and biogenesis // inferred from mutant phenotype /// 30036 // actin cytoskeleton organization and biogenesis // inferred from physical interaction /// 45053 // protein-Golgi retention // inferred from mutant phenotype 5624 // membrane fraction // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3924 // GTPase activity // inferred from direct assay /// 3924 // GTPase activity // inferred from sequence similarity 1280.09301757813 1537.11376953125 1691.56970214844 1367.84582519531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR001C /GEN=VPS1 /DB_XREF=GI:6322853 /SEG=NC_001143:-440251,442365 /DEF=involved in vacuolar protein sorting and normal organization of intracellular membranes; probably required for membrane-protein retention in a late Golgi compartment /NOTE=Vps1p; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 8299420]; go_function: GTPase activity [goid GO:0003924] [evidence IDA,ISS] [pmid 8299420]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence IDA,IGI,IMP] [pmid 12707309]; go_process: protein-Golgi retention [goid GO:0045053] [evidence IMP] [pmid 8649377]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 8299420]; go_process: vacuolar transport [goid GO:0007034] [evidence IMP] [pmid 8299420] --- --- --- --- --- --- S0001709 // VPS1 SGDID:S0001709, Chr XI from 442365-440251, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018418 // cdna:Genscan chromosome:SGD1:XI:440251:442365:-1 // ensembl // 11 // --- /// GENEFINDER00000022975 // cdna:GeneFinder chromosome:SGD1:XI:440251:442365:-1 // ensembl // 11 // --- /// YKR001C // cdna:known chromosome:SGD1:XI:440251:442365:-1 gene:YKR001C // ensembl // 11 // --- --- No cerevisiae_gene 1.36803384382353 1.20078287157553 -1.00750963720602 1.32144280057773 1.06855189928558 Max fold change below threshold 4 1.36803384382353 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772253_at YOR250C.S1 Subunit of cleavage factor I (CFI), involved in both the endonucleolyitc cleavage and polyadenylation steps of mRNA 3? end maturation 1.36771531217505 443.08088684082 446.187316894531 CLP1 6378 // mRNA polyadenylylation // inferred from direct assay /// 6379 // mRNA cleavage // inferred from direct assay /// 31124 // mRNA 3'-end processing // inferred from direct assay 5849 // mRNA cleavage factor complex // inferred from physical interaction 3723 // RNA binding // inferred from direct assay 403.014770507813 334.952301025391 551.20947265625 489.35986328125 0.000732421991415322 0.014160200022161 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR250C /GEN=CLP1 /DB_XREF=GI:6324824 /SEG=NC_001147:-800970,802307 /DEF=cleavage/polyadenylation factor IA subunit; interacts with Pcf11p in the 2-hybrid system /NOTE=Clp1p; go_component: mRNA cleavage factor complex [goid GO:0005849] [evidence IPI] [pmid 11344258]; go_function: cleavage/polyadenylation specificity factor activity [goid GO:0030364] [evidence IDA] [pmid 11344258]; go_process: mRNA cleavage [goid GO:0006379] [evidence IDA] [pmid 11344258]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IDA] [pmid 11344258] --- --- --- --- --- --- S0005776 // CLP1 SGDID:S0005776, Chr XV from 802307-800970, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017675 // cdna:Genscan chromosome:SGD1:XV:800970:802307:-1 // ensembl // 11 // --- /// YOR250C // cdna:known chromosome:SGD1:XV:800970:802307:-1 gene:YOR250C // ensembl // 11 // --- --- No cerevisiae_gene 1.004356584301 -1.20320048339439 1.27258089284952 1.36771531217505 1.21424796084928 Max fold change below threshold 4 1.36771531217505 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1777192_at YBR052C.S1 Protein of unknown function; member of a flavodoxin-like fold protein family that includes Pst2p and Ycp4p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.36706872154224 4973.9365234375 4518.14331054688 --- --- 5737 // cytoplasm // inferred from direct assay --- 4905.44775390625 5514.587890625 4433.28515625 4130.8388671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR052C /GEN=REG2 /DB_XREF=GI:6319526 /SEG=NC_001134:-338680,339312 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ybr052cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000256 // YBR052C SGDID:S0000256, Chr II from 339350-338718, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENEFINDER00000022141 // cdna:GeneFinder chromosome:SGD1:II:338718:339350:-1 // ensembl // 10 // --- /// YBR052C // cdna:known chromosome:SGD1:II:338718:339350:-1 gene:YBR052C // ensembl // 10 // --- --- No cerevisiae_gene -1.36706872154224 1.12417625612946 -1.08365378330154 -1.10650399895676 -1.18751854323627 Max fold change below threshold 4 1.36706872154224 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774560_at YLR034C.S1 Putative divalent metal ion transporter involved in iron homeostasis; transcriptionally regulated by metal ions; member of the Nramp family of metal transport proteins 1.3665464846615 775.836090087891 763.586303710938 SMF3 6880 // intracellular sequestering of iron ion // inferred from mutant phenotype 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay 5381 // iron ion transporter activity // traceable author statement 702.221313476563 631.671325683594 920.000854492188 824.951293945313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR034C /GEN=SMF3 /DB_XREF=GI:6323062 /SEG=NC_001144:-210513,211934 /DEF=Putative metal transporter, Nramp homolog, homolog of SMF1 and SMF2 /NOTE=Smf3p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 11027260]; go_function: iron ion transporter activity [goid GO:0005381] [evidence TAS] [pmid 12051835]; go_process: intracellular iron ion storage [goid GO:0006880] [evidence IMP] [pmid 11027260] --- --- --- --- --- S0004024 // span:7-29,44-66,87-109,119-141,154-176,196-218,257-279,294-316,373-395,447-469 // numtm:10 S0004024 // SMF3 SGDID:S0004024, Chr XII from 211934-210513, reverse complement, Verified ORF // sgd // 11 // --- /// YLR034C // cdna:known chromosome:SGD1:XII:210513:211934:-1 gene:YLR034C // ensembl // 11 // --- GENEFINDER00000024862 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene -1.3665464846615 -1.11168781124681 -1.04364721200766 1.31012949455698 1.17477393253864 Max fold change below threshold 4 1.3665464846615 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777563_at YLR359W.S1 Adenylosuccinate lyase, catalyzes two steps in the 'de novo' purine nucleotide biosynthetic pathway 1.36611581275435 2701.20532226563 2343.50354003906 ADE13 6144 // purine base metabolism // traceable author statement /// 6164 // purine nucleotide biosynthesis // traceable author statement /// 6189 // 'de novo' IMP biosynthesis // traceable author statement --- 4018 // adenylosuccinate lyase activity // traceable author statement 2411.53173828125 2610.64453125 2791.76611328125 2275.47534179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR359W /GEN=ADE13 /DB_XREF=GI:6323391 /SEG=NC_001144:+844281,845729 /DEF=Adenylosuccinate lyase, catalyzes two steps in the 'de novo' purine nucleotide biosynthetic pathway /NOTE=Ade13p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: adenylosuccinate lyase activity [goid GO:0004018] [evidence TAS]; go_process: purine base metabolism [goid GO:0006144] [evidence TAS] [pmid 7896125]; go_process: purine nucleotide biosynthesis [goid GO:0006164] [evidence TAS] --- --- --- --- --- --- S0004351 // ADE13 SGDID:S0004351, Chr XII from 844281-845729, Verified ORF // sgd // 11 // --- /// GENSCAN00000018093 // cdna:Genscan chromosome:SGD1:XII:844281:845729:1 // ensembl // 11 // --- /// GENEFINDER00000024823 // cdna:GeneFinder chromosome:SGD1:XII:844281:845729:1 // ensembl // 11 // --- /// YLR359W // cdna:known chromosome:SGD1:XII:844281:845729:1 gene:YLR359W // ensembl // 11 // --- --- No cerevisiae_gene 1.19511929678706 1.08256693860088 1.36611581275435 1.15767338615705 -1.05979251630867 Max fold change below threshold 4 1.36611581275435 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780066_at YBR119W.S1 U1 snRNP A protein, homolog of human U1-A; involved in nuclear mRNA splicing 1.36560370515535 279.025512695313 247.59041595459 MUD1 398 // nuclear mRNA splicing, via spliceosome // inferred from genetic interaction 5685 // snRNP U1 // inferred from direct assay 3723 // RNA binding // inferred from genetic interaction /// 3723 // RNA binding // inferred from sequence similarity 209.955429077148 286.715911865234 271.335113525391 285.225402832031 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR119W /GEN=MUD1 /DB_XREF=GI:6319595 /SEG=NC_001134:+479294,480279 /DEF=U1 snRNP A protein /NOTE=Mud1p; go_component: snRNP U1 [goid GO:0005685] [evidence IDA] [pmid 11804584]; go_function: RNA binding [goid GO:0003723] [evidence IGI,ISS] [pmid 8449403]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IGI] [pmid 8449403] --- --- --- --- --- --- S0000323 // MUD1 SGDID:S0000323, Chr II from 479332-479339,479429-480317, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022381 // cdna:GeneFinder chromosome:SGD1:II:479637:480317:1 // ensembl // 11 // --- /// GENSCAN00000021235 // cdna:Genscan chromosome:SGD1:II:479742:480317:1 // ensembl // 11 // --- /// YBR119W // cdna:known chromosome:SGD1:II:479332:480317:1 gene:YBR119W // ensembl // 11 // --- --- No cerevisiae_gene 1.10835356945048 1.36560370515535 1.23977395046483 1.29234625995638 1.35850453634721 Max fold change below threshold 4 1.36560370515535 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769848_at YKL140W.S1 Steryl ester hydrolase, one of three gene products (Yeh1p, Yeh2p, Tgl1p) responsible for steryl ester hydrolase activity and involved in sterol homeostasis; localized to lipid particle membranes 1.36556337488198 1449.82391357422 2063.75701904297 TGL1 6629 // lipid metabolism // inferred from mutant phenotype /// 16125 // sterol metabolism // inferred from mutant phenotype 5811 // lipid particle // inferred from direct assay /// 16021 // integral to membrane // inferred from direct assay 4771 // sterol esterase activity // inferred from direct assay /// 16298 // lipase activity // inferred from sequence similarity 1976.18273925781 1452.4921875 1447.15563964844 2151.33129882813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL140W /GEN=TGL1 /DB_XREF=GI:6322709 /SEG=NC_001143:+180784,182430 /DEF=triglyceride lipase-cholesterol esterase /NOTE=Tgl1p; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 10515935]; go_function: lipase activity [goid GO:0016298] [evidence ISS] [pmid 1574929]; go_process: lipid metabolism [goid GO:0006629] [evidence IMP] [pmid 10515935] --- --- --- --- --- --- S0001623 // TGL1 SGDID:S0001623, Chr XI from 180784-182430, Verified ORF // sgd // 11 // --- /// GENSCAN00000018314 // cdna:Genscan chromosome:SGD1:XI:180784:182430:1 // ensembl // 11 // --- /// GENEFINDER00000023045 // cdna:GeneFinder chromosome:SGD1:XI:180784:182430:1 // ensembl // 11 // --- /// YKL140W // cdna:known chromosome:SGD1:XI:180784:182430:1 gene:YKL140W // ensembl // 11 // --- --- No cerevisiae_gene -1.28652147923091 -1.36054620896735 -1.06641409560232 -1.36556337488198 1.08862973858181 Max fold change below threshold 4 1.36556337488198 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773650_at YOL038W.S1 20S proteasome alpha-type subunit 1.36545122287889 2727.14111328125 3342.69555664063 PRE6 6511 // ubiquitin-dependent protein catabolism // traceable author statement 19773 // proteasome core complex, alpha-subunit complex (sensu Eukaryota) // inferred from sequence similarity /// 19773 // proteasome core complex, alpha-subunit complex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement 3458.36791992188 2532.765625 2921.5166015625 3227.02319335938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL038W /GEN=PRE6 /DB_XREF=GI:6324535 /SEG=NC_001147:+255335,256099 /DEF=20S proteasome alpha-type subunit /NOTE=Pre6p; go_component: proteasome core complex (sensu Eukarya) [goid GO:0005839] [evidence TAS] [pmid 10872471]; go_component: proteasome core complex, alpha-subunit complex (sensu Eukarya) [goid GO:0019773] [evidence ISS] [pmid 7918444]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 10872471]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10872471] --- --- --- --- --- --- S0005398 // PRE6 SGDID:S0005398, Chr XV from 255335-256099, Verified ORF // sgd // 11 // --- /// GENSCAN00000017437 // cdna:Genscan chromosome:SGD1:XV:255335:256099:1 // ensembl // 11 // --- /// GENEFINDER00000022782 // cdna:GeneFinder chromosome:SGD1:XV:255335:256099:1 // ensembl // 11 // --- /// YOL038W // cdna:known chromosome:SGD1:XV:255335:256099:1 gene:YOL038W // ensembl // 11 // --- --- No cerevisiae_gene -1.25512410603649 -1.36545122287889 -1.1576528996537 -1.18375775036577 -1.07168982455365 Max fold change below threshold 4 1.36545122287889 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771231_at YPL180W.S1 Subunit of TORC1 (Tor1p or Tor2p-Kog1p-Lst8p-Tco89p), a complex that regulates growth in response to nutrient availability; cooperates with Ssd1p in the maintenance of cellular integrity; deletion strains are hypersensitive to rapamycin 1.36544685406405 606.614898681641 807.413452148438 TCO89 6071 // glycerol metabolism // inferred from genetic interaction 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay --- 763.254455566406 558.977783203125 654.252014160156 851.572448730469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL180W /GEN=TCO89 /DB_XREF=GI:6325077 /SEG=NC_001148:+205247,207646 /DEF=Tor Complex One, 89 kDa subunit /NOTE=Tco89p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: glycerol metabolism [goid GO:0006071] [evidence IGI] [pmid 10931309] --- --- --- --- --- --- S0006101 // TCO89 SGDID:S0006101, Chr XVI from 205247-207646, Verified ORF // sgd // 11 // --- /// GENSCAN00000017048 // cdna:Genscan chromosome:SGD1:XVI:205247:207646:1 // ensembl // 11 // --- /// YPL180W // cdna:known chromosome:SGD1:XVI:205247:207646:1 gene:YPL180W // ensembl // 11 // --- GENEFINDER00000021015 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene -1.11347574123317 -1.36544685406405 1.02990477291736 -1.16660619921235 1.11571238467062 Max fold change below threshold 4 1.36544685406405 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770701_at YJL140W.S1 RNA polymerase II subunit B32; forms two subunit dissociable complex with Rpb7p; dispensable under some environmental conditions; involved in export of mRNA to cytoplasm under stress conditions 1.36496848159292 1458.13098144531 1099.50561523438 RPB4 6366 // transcription from RNA polymerase II promoter // traceable author statement /// 6406 // mRNA-nucleus export // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5665 // DNA-directed RNA polymerase II, core complex // traceable author statement /// 5737 // cytoplasm // inferred from direct assay 3899 // DNA-directed RNA polymerase activity // traceable author statement 1070.74475097656 1454.72912597656 1461.53283691406 1128.26647949219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL140W /GEN=RPB4 /DB_XREF=GI:6322321 /SEG=NC_001142:+150879,151544 /DEF=RNA polymerase II core subunit /NOTE=Rpb4p; go_component: DNA-directed RNA polymerase II, core complex [goid GO:0005665] [evidence TAS] [pmid 9774381]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 9774381]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence TAS] --- --- --- --- --- --- S0003676 // RPB4 SGDID:S0003676, Chr X from 150879-151544, Verified ORF // sgd // 11 // --- /// GENSCAN00000024031 // cdna:Genscan chromosome:SGD1:X:150879:151544:1 // ensembl // 11 // --- /// GENEFINDER00000024298 // cdna:GeneFinder chromosome:SGD1:X:150879:151544:1 // ensembl // 11 // --- /// YJL140W // cdna:known chromosome:SGD1:X:150879:151544:1 gene:YJL140W // ensembl // 11 // --- --- No cerevisiae_gene 1.30015980088333 1.35861429593728 -1.11064942773934 1.36496848159292 1.05372123324738 Max fold change below threshold 4 1.36496848159292 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777199_at YMR312W.S1 Elongator protein, part of the HAP subcomplex of Elongator, which is a six-subunit component of the RNA polymerase II holoenzyme; required for Elongator structural integrity and histone acetyltransferase activity 1.36452836270295 570.03825378418 660.634155273438 ELP6 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 8023 // transcription elongation factor complex // inferred from direct assay 16944 // RNA polymerase II transcription elongation factor activity // inferred from mutant phenotype /// 16944 // RNA polymerase II transcription elongation factor activity // inferred from physical interaction 608.977478027344 477.215118408203 662.861389160156 712.290832519531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR312W /GEN=ELP6 /DB_XREF=GI:6323972 /SEG=NC_001145:+898404,899225 /DEF=Elongator protein, part of the HAP subcomplex of Elongator, which is a six-subunit component of the RNA polymerase II holoenzyme; required for Elongator structural integrity and histone acetyltransferase activity /NOTE=Elp6p; go_component: transcription elongation factor complex [goid GO:0008023] [evidence IDA] [pmid 11689709]; go_function: Pol II transcription elongation factor activity [goid GO:0016944] [evidence IMP,IPI] [pmid 11689709]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP] [pmid 11689709] --- --- --- --- --- --- S0004929 // ELP6 SGDID:S0004929, Chr XIII from 898404-899225, Verified ORF // sgd // 11 // --- /// GENSCAN00000018978 // cdna:Genscan chromosome:SGD1:XIII:898404:899225:1 // ensembl // 11 // --- /// YMR312W // cdna:known chromosome:SGD1:XIII:898404:899225:1 gene:YMR312W // ensembl // 11 // --- --- No cerevisiae_gene 1.0254398727856 -1.27610684267222 1.36452836270295 1.08848260087936 1.16965053424775 Max fold change below threshold 4 1.36452836270295 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779447_at YGR195W.S1 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the exosome; required for 3' processing of the 5.8S rRNA; involved in 3' to 5' mRNA degradation and translation inhibition of non-poly(A) mRNAs 1.36447948681909 783.501953125 957.588958740234 SKI6 6365 // 35S primary transcript processing // traceable author statement /// 6402 // mRNA catabolism // inferred from mutant phenotype /// 6402 // mRNA catabolism // traceable author statement /// 43330 // response to exogenous dsRNA // inferred from mutant phenotype 176 // nuclear exosome (RNase complex) // inferred from direct assay /// 177 // cytoplasmic exosome (RNase complex) // inferred from direct assay 175 // 3'-5'-exoribonuclease activity // traceable author statement 878.101013183594 643.542846679688 923.461059570313 1037.07690429688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR195W /GEN=SKI6 /DB_XREF=GI:6321634 /SEG=NC_001139:+888885,889625 /DEF=superkiller; ExtraCellular Mutant; Ribosomal RNA Processing /NOTE=Ski6p; go_component: cytoplasmic exosome (RNase complex) [goid GO:0000177] [evidence IDA] [pmid 10465791]; go_component: nuclear exosome (RNase complex) [goid GO:0000176] [evidence IDA] [pmid 10465791]; go_function: 3'-5'-exoribonuclease activity [goid GO:0000175] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: mRNA catabolism [goid GO:0006402] [evidence IMP] [pmid 9482746]; go_process: mRNA catabolism [goid GO:0006402] [evidence TAS] [pmid 9841679] --- --- --- --- scop // a.2.5.Prefoldin // All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin // 0.25 --- S0003427 // SKI6 SGDID:S0003427, Chr VII from 888887-889627, Verified ORF // sgd // 11 // --- /// GENSCAN00000019493 // cdna:Genscan chromosome:SGD1:VII:888887:889627:1 // ensembl // 11 // --- /// GENEFINDER00000021573 // cdna:GeneFinder chromosome:SGD1:VII:888887:889627:1 // ensembl // 11 // --- /// YGR195W // cdna:known chromosome:SGD1:VII:888887:889627:1 gene:YGR195W // ensembl // 11 // --- --- No cerevisiae_gene 1.23220322619189 -1.36447948681909 1.12884068021487 1.05165697989832 1.18104510611701 Max fold change below threshold 4 1.36447948681909 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772671_at YPR166C.S1 Mitochondrial ribosomal protein of the small subunit 1.36408079657219 585.368041992188 783.728332519531 MRP2 6412 // protein biosynthesis // traceable author statement /// 6412 // protein biosynthesis // inferred from direct assay 5763 // mitochondrial small ribosomal subunit // traceable author statement /// 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // traceable author statement /// 3735 // structural constituent of ribosome // inferred from direct assay 778.674499511719 570.841918945313 599.894165039063 788.782165527344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR166C /GEN=MRP2 /DB_XREF=GI:6325424 /SEG=NC_001148:-876276,876623 /DEF=Mitochondrial ribosomal protein of the small subunit /NOTE=Mrp2p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 11278769]; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 11278769]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 11278769]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0006370 // MRP2 SGDID:S0006370, Chr XVI from 876625-876278, reverse complement, Verified ORF // sgd // 11 // --- /// YPR166C // cdna:known chromosome:SGD1:XVI:876278:876625:-1 gene:YPR166C // ensembl // 11 // --- --- No cerevisiae_gene -1.06077667379433 -1.36408079657219 1.10004441987386 -1.29801979230956 1.01298060488942 Max fold change below threshold 4 1.36408079657219 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777413_s_at YDR385W.S1 Elongation factor 2 (EF-2), also encoded by EFT2; catalyzes ribosomal translocation during protein synthesis; contains diphthamide, the unique posttranslationally modified histidine residue specifically ADP-ribosylated by diphtheria toxin /// Elongation factor 2 (EF-2), also encoded by EFT1; catalyzes ribosomal translocation during protein synthesis; contains diphthamide, the unique posttranslationally modified histidine residue specifically ADP-ribosylated by diphtheria toxin 1.36402078459484 7139.13891601563 6345.5107421875 EFT1 /// EFT2 6414 // translational elongation // traceable author statement 5840 // ribosome // traceable author statement 3746 // translation elongation factor activity // traceable author statement 7248.01416015625 8501.90234375 5776.37548828125 5443.00732421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR385W /GEN=EFT2 /DB_XREF=GI:6320593 /SEG=NC_001136:+1243218,1245746 /DEF=Elongation factor 2 (EF-2), also encoded by EFT1; catalyzes ribosomal translocation during protein synthesis; contains diphthamide, the unique posttranslationally modified histidine residue specifically ADP-ribosylated by diphtheria toxin /NOTE=Eft2p; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 9841679]; go_function: translation elongation factor activity [goid GO:0003746] [evidence TAS] [pmid 9841679]; go_process: translational elongation [goid GO:0006414] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0002793 // EFT2 SGDID:S0002793, Chr IV from 1243220-1245748, Verified ORF // sgd // 11 // --- /// S0005659 // EFT1 SGDID:S0005659, Chr XV from 575098-577626, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023882 // cdna:GeneFinder chromosome:SGD1:IV:1243220:1245748:1 // ensembl // 11 // --- /// GENSCAN00000025405 // cdna:Genscan chromosome:SGD1:IV:1243220:1245748:1 // ensembl // 11 // --- /// GENSCAN00000017560 // cdna:Genscan chromosome:SGD1:XV:575098:577626:1 // ensembl // 11 // --- /// GENEFINDER00000022783 // cdna:GeneFinder chromosome:SGD1:XV:575098:577626:1 // ensembl // 11 // --- /// YDR385W // cdna:known chromosome:SGD1:IV:1243220:1245748:1 gene:YDR385W // ensembl // 11 // --- /// YOR133W // cdna:known chromosome:SGD1:XV:575098:577626:1 gene:YOR133W // ensembl // 11 // --- --- No cerevisiae_gene -1.1030209415906 1.17299747984581 -1.36402078459484 -1.2547685265372 -1.33161940236716 Max fold change below threshold 4 1.36402078459484 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777240_at YCL001W.S1 Protein involved in retention of membrane proteins, including Sec12p, in the ER; localized to Golgi; functions as a retrieval receptor in returning membrane proteins to the ER 1.36373771545726 1722.18933105469 1430.09204101563 RER1 6621 // protein-ER retention // inferred from mutant phenotype /// 6888 // ER to Golgi transport // inferred from physical interaction /// 6890 // retrograde transport, Golgi to ER // inferred from direct assay /// 6890 // retrograde transport, Golgi to ER // inferred from mutant phenotype 30137 // COPI-coated vesicle // inferred from direct assay /// 30137 // COPI-coated vesicle // inferred from mutant phenotype /// 30138 // COPII-coated vesicle // inferred from direct assay --- 1401.28967285156 1910.99157714844 1533.38708496094 1458.89440917969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL001W /GEN=RER1 /DB_XREF=GI:6319844 /SEG=NC_001135:+111913,112479 /DEF=Protein involved in retention of membrane proteins, including Sec12p, in the ER; localized to Golgi, where it may function in returning membrane proteins to the ER /NOTE=Rer1p; go_component: COPII-coated vesicle [goid GO:0030138] [evidence IDA] [pmid 11157978]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IPI] [pmid 11157978] --- --- --- --- --- S0000507 // span:62-84,137-159 // numtm:2 S0000507 // RER1 SGDID:S0000507, Chr III from 111913-112479, Verified ORF // sgd // 11 // --- /// YCL001W // cdna:known chromosome:SGD1:III:111913:112479:1 gene:YCL001W // ensembl // 11 // --- --- No cerevisiae_gene 1.09500377416347 1.36373771545726 -1.06313825395999 1.09426845474467 1.04110837141253 Max fold change below threshold 4 1.36373771545726 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773734_at YKL159C.S1 Protein involved in calcineurin regulation during calcium signaling; has similarity to H. sapiens DSCR1 which is found in the Down Syndrome candidate region 1.36310073681336 258.6201171875 311.427124023438 RCN1 19722 // calcium-mediated signaling // inferred from physical interaction 5955 // calcineurin complex // inferred from physical interaction 8597 // calcium-dependent protein serine/threonine phosphatase regulator activity // inferred from genetic interaction /// 8597 // calcium-dependent protein serine/threonine phosphatase regulator activity // inferred from mutant phenotype /// 8597 // calcium-dependent protein serine/threonine phosphatase regulator activity // inferred from physical interaction 293.058837890625 214.994262695313 302.245971679688 329.79541015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL159C /GEN=RCN1 /DB_XREF=GI:6322690 /SEG=NC_001143:-153821,154456 /DEF=Regulator of calcineurin /NOTE=Rcn1p; go_component: calcineurin complex [goid GO:0005955] [evidence IPI] [pmid 10887154]; go_function: calcium-dependent protein serine/threonine phosphatase regulator activity [goid GO:0008597] [evidence IGI,IMP,IPI] [pmid 10887154]; go_process: calcium-mediated signaling [goid GO:0019722] [evidence IPI] [pmid 10887154] --- --- --- --- --- --- S0001642 // RCN1 SGDID:S0001642, Chr XI from 154456-153821, reverse complement, Verified ORF // sgd // 11 // --- /// AF174139 // Saccharomyces cerevisiae Down Syndrome candidate region 1-like protein (DSCR1L) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000018300 // cdna:Genscan chromosome:SGD1:XI:153821:154456:-1 // ensembl // 11 // --- /// GENEFINDER00000023058 // cdna:GeneFinder chromosome:SGD1:XI:153821:154456:-1 // ensembl // 11 // --- /// YKL159C // cdna:known chromosome:SGD1:XI:153821:154456:-1 gene:YKL159C // ensembl // 11 // --- --- No cerevisiae_gene 1.27201583429762 -1.36310073681336 1.27026366475642 1.03134911014863 1.12535561981357 Max fold change below threshold 4 1.36310073681336 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771975_at YMR055C.S1 Mitotic exit network regulator, forms GTPase-activating Bfa1p-Bub2p complex that binds Tem1p and spindle pole bodies, blocks cell cycle progression before anaphase in response to spindle and kinetochore damage 1.36299100408579 233.509635925293 246.15177154541 BUB2 7094 // mitotic spindle checkpoint // inferred from genetic interaction /// 7094 // mitotic spindle checkpoint // inferred from mutant phenotype 5816 // spindle pole body // inferred from direct assay 5096 // GTPase activator activity // traceable author statement 236.146011352539 186.651840209961 280.367431640625 256.157531738281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR055C /GEN=BUB2 /DB_XREF=GI:6323700 /SEG=NC_001145:-386100,387020 /DEF=Protein required for cell cycle arrest in response to loss of microtubule function /NOTE=Bub2p; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 10220406]; go_function: GTPase activator activity [goid GO:0005096] [evidence TAS] [pmid 12432084]; go_process: mitotic spindle checkpoint [goid GO:0007094] [evidence IGI,IMP] [pmid 10704439] --- --- --- --- --- S0004659 // span:230-248 // numtm:1 S0004659 // BUB2 SGDID:S0004659, Chr XIII from 387020-386100, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018761 // cdna:Genscan chromosome:SGD1:XIII:386100:387020:-1 // ensembl // 11 // --- /// YMR055C // cdna:known chromosome:SGD1:XIII:386100:387020:-1 gene:YMR055C // ensembl // 11 // --- --- No cerevisiae_gene -1.36299100408579 -1.26516840705617 1.11346637533507 1.18726304134804 1.08474214860173 Max fold change below threshold 4 1.36299100408579 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775976_at YFR053C.S1 Hexokinase isoenzyme 1, a cytosolic protein that catalyzes phosphorylation of glucose during glucose metabolism; expression is highest during growth on non-glucose carbon sources; glucose-induced repression involves the hexokinase Hxk2p 1.36268822550518 7143.4560546875 6539.80737304688 HXK1 6000 // fructose metabolism // inferred from mutant phenotype /// 6006 // glucose metabolism // inferred from mutant phenotype 5829 // cytosol // traceable author statement 4396 // hexokinase activity // inferred from mutant phenotype /// 4396 // hexokinase activity // inferred from direct assay 7543.7109375 8573.05078125 5713.861328125 5535.90380859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR053C /GEN=HXK1 /DB_XREF=GI:14318578 /SEG=NC_001138:-253579,255036 /DEF=Hexokinase isoenzyme 1, cytosolic protein that catalyzes phosphorylation of glucose during glucose metabolism, expression is highest during growth on non-glucose carbon sources and is repressed by Hxk2p /NOTE=Hxk1p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: hexokinase activity [goid GO:0004396] [evidence IDA] [pmid 12611889]; go_function: hexokinase activity [goid GO:0004396] [evidence IMP] [pmid 6341351]; go_process: fructose metabolism [goid GO:0006000] [evidence IMP] [pmid 6300872] --- --- --- --- --- --- S0001949 // HXK1 SGDID:S0001949, Chr VI from 255036-253579, reverse complement, Verified ORF // sgd // 11 // --- /// M14410 // Yeast (S.cerevisiae) hexokinase PI (HXK1) gene, complete cds. // gb // 10 // --- /// GENEFINDER00000018536 // cdna:GeneFinder chromosome:SGD1:VI:253579:255036:-1 // ensembl // 11 // --- /// GENSCAN00000023289 // cdna:Genscan chromosome:SGD1:VI:253579:254991:-1 // ensembl // 11 // --- /// YFR053C // cdna:known chromosome:SGD1:VI:253579:255036:-1 gene:YFR053C // ensembl // 11 // --- YFR052C-A // ensembl // 3 // Cross Hyb Matching Probes No cerevisiae_gene -1.32543344736133 1.13645006446802 -1.18340017134941 -1.3202474656443 -1.36268822550518 Max fold change below threshold 4 1.36268822550518 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777043_at YGL060W.S1 Protein with a role in resistance to oxidative stress; has similarity to Ybp1p, which is involved in regulation of the transcription factor Yap1p via oxidation of specific cysteine residues 1.36246687456699 375.502532958984 346.213745117188 YBP2 --- 5737 // cytoplasm // inferred from direct assay --- 320.764343261719 313.974273681641 437.030792236328 371.663146972656 0.000732421991415322 0.000244141003349796 0.00195312988944352 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL060W /GEN=YBP2 /DB_XREF=GI:6321378 /SEG=NC_001139:+390068,391993 /DEF=35% identity with Ybp1p, which is required for the oxidative stress response to peroxides via the the Yap1p transcription factor /NOTE=Ybp2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003028 // YBP2 SGDID:S0003028, Chr VII from 390070-391995, Verified ORF // sgd // 11 // --- /// GENSCAN00000019300 // cdna:Genscan chromosome:SGD1:VII:390070:391995:1 // ensembl // 11 // --- /// GENEFINDER00000021718 // cdna:GeneFinder chromosome:SGD1:VII:390274:391995:1 // ensembl // 11 // --- /// YGL060W // cdna:known chromosome:SGD1:VII:390070:391995:1 gene:YGL060W // ensembl // 11 // --- --- No cerevisiae_gene 1.12220128503942 -1.02162619726915 1.00004347906336 1.36246687456699 1.15867974349446 Max fold change below threshold 4 1.36246687456699 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769620_at YKL192C.S1 Mitochondrial matrix acyl carrier protein, involved in biosynthesis of octanoate, which is a precursor to lipoic acid; activated by phosphopantetheinylation catalyzed by Ppt2p 1.36239307722467 3134.49462890625 3335.67138671875 ACP1 6633 // fatty acid biosynthesis // traceable author statement 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 36 // acyl carrier activity // traceable author statement 3571.58862304688 3307.90087890625 2961.08837890625 3099.75415039063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL192C /GEN=ACP1 /DB_XREF=GI:6322656 /SEG=NC_001143:-80165,80542 /DEF=Mitochondrial matrix acyl carrier protein, involved in biosynthesis of octanoate, which is a precursor to lipoic acid; activated by phosphopantetheinylation catalyzed by Ppt2p /NOTE=Acp1p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 8595652]; go_function: acyl carrier activity [goid GO:0000036] [evidence TAS] [pmid 8595652]; go_process: fatty acid biosynthesis [goid GO:0006633] [evidence TAS] --- --- --- --- --- --- S0001675 // ACP1 SGDID:S0001675, Chr XI from 80542-80165, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018273 // cdna:Genscan chromosome:SGD1:XI:80165:80542:-1 // ensembl // 11 // --- /// GENEFINDER00000022937 // cdna:GeneFinder chromosome:SGD1:XI:80165:80542:-1 // ensembl // 11 // --- /// YKL192C // cdna:known chromosome:SGD1:XI:80165:80542:-1 gene:YKL192C // ensembl // 11 // --- --- No cerevisiae_gene -1.36239307722467 -1.07971452404215 -1.1843159303362 -1.20617427311174 -1.15221674034916 Max fold change below threshold 4 1.36239307722467 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771504_at SPAC24C9.06c.S1 --- 1.36235809811153 --- --- --- --- 6.44885110855103 7.27058410644531 7.85134267807007 7.87710952758789 0.366210997104645 0.5 0.014160200022161 0.219482004642487 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC24C9.06c /DEF=aconitate hydratase (predicted) --- --- --- --- --- --- SPAC24C9.06c // |||aconitate hydratase|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.02998616654613 1.1274231617481 1.36235809811153 1.21747929141353 1.221474863506 Max fold change below threshold 4 1.36235809811153 Max fold change below threshold AAAAPA No 4 0 AAPA 3 1 0 No No x = 1
1778781_at YOR185C.S1 GTP binding protein (mammalian Ranp homolog) involved in the maintenance of nuclear organization, RNA processing and transport; interacts with Kap121p, Kap123p and Pdr6p (karyophilin betas); Gsp1p homolog that is not required for viability 1.36226866521793 3019.94775390625 2473.58520507813 GSP2 6997 // nuclear organization and biogenesis // inferred from genetic interaction /// 6997 // nuclear organization and biogenesis // inferred from sequence similarity 5634 // nucleus // inferred from genetic interaction /// 5634 // nucleus // inferred from sequence similarity 3924 // GTPase activity // inferred from genetic interaction /// 3924 // GTPase activity // inferred from sequence similarity 2496.71801757813 2973.33227539063 3066.56323242188 2450.45239257813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR185C /GEN=GSP2 /DB_XREF=GI:6324759 /SEG=NC_001147:-681444,682106 /DEF=GTP binding protein (mammalian Ranp homolog) involved in the maintenance of nuclear organization, RNA processing and transport; interacts with Kap121p, Kap123p and Pdr6p (karyophilin betas); Gsp1p homolog that is not required for viability /NOTE=Gsp2p; go_component: nucleus [goid GO:0005634] [evidence IGI,ISS] [pmid 8455603]; go_function: GTPase activity [goid GO:0003924] [evidence IGI,ISS] [pmid 8455603]; go_process: nuclear organization and biogenesis [goid GO:0006997] [evidence IGI,ISS] [pmid 8455603] --- --- --- --- --- --- S0005711 // GSP2 SGDID:S0005711, Chr XV from 682106-681444, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017602 // cdna:Genscan chromosome:SGD1:XV:681444:682106:-1 // ensembl // 10 // --- /// GENEFINDER00000022710 // cdna:GeneFinder chromosome:SGD1:XV:681444:682106:-1 // ensembl // 10 // --- /// YOR185C // cdna:known chromosome:SGD1:XV:681444:682106:-1 gene:YOR185C // ensembl // 10 // --- --- No cerevisiae_gene -1.36226866521793 1.19089631045913 -1.00383943252492 1.2282377148047 -1.01888044229716 Max fold change below threshold 4 1.36226866521793 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774459_at YBL035C.S1 B subunit of DNA polymerase alpha-primase complex, required for initiation of DNA replication during mitotic and premeiotic DNA synthesis; also functions in telomere capping and length regulation 1.36226204113583 92.971321105957 129.140243530273 POL12 6269 // DNA replication, synthesis of RNA primer // traceable author statement /// 6270 // DNA replication initiation // traceable author statement /// 6273 // lagging strand elongation // traceable author statement 5634 // nucleus // inferred from direct assay /// 5635 // nuclear membrane // inferred from direct assay /// 5658 // alpha DNA polymerase:primase complex // traceable author statement 3889 // alpha DNA polymerase activity // traceable author statement 119.7333984375 87.8930740356445 98.0495681762695 138.547088623047 0.0239257998764515 0.0239257998764515 0.0239257998764515 0.0107421996071935 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL035C /GEN=POL12 /DB_XREF=GI:6319436 /SEG=NC_001134:-151458,153575 /DEF=Subunit of the DNA polymerase alpha-primase complex, required for the initiation of DNA replication during mitotic DNA synthesis and premeiotic DNA synthesis /NOTE=Pol12p; go_component: alpha DNA polymerase:primase complex [goid GO:0005658] [evidence TAS] [pmid 9745046]; go_function: alpha DNA polymerase activity [goid GO:0003889] [evidence TAS] [pmid 9745046]; go_process: DNA replication initiation [goid GO:0006270] [evidence TAS] [pmid 9745046]; go_process: DNA replication, synthesis of RNA primer [goid GO:0006269] [evidence TAS] [pmid 9745046]; go_process: lagging strand elongation [goid GO:0006273] [evidence TAS] [pmid 9745046] --- --- --- --- --- --- S0000131 // POL12 SGDID:S0000131, Chr II from 153613-151496, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021110 // cdna:Genscan chromosome:SGD1:II:151496:153148:-1 // ensembl // 11 // --- /// GENEFINDER00000022384 // cdna:GeneFinder chromosome:SGD1:II:151496:153148:-1 // ensembl // 11 // --- /// YBL035C // cdna:known chromosome:SGD1:II:151496:153613:-1 gene:YBL035C // ensembl // 11 // --- --- No cerevisiae_gene 1.32202751983981 -1.36226204113583 -1.01586177124957 -1.22115171606109 1.15712984372834 Max fold change below threshold 4 1.36226204113583 Max fold change below threshold PPPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1774987_at YGL126W.S1 Protein required for inositol prototrophy, appears to be involved in the synthesis of inositol phospholipids from inositol but not in the control of inositol synthesis 1.36225356297075 574.564361572266 591.677429199219 SCS3 6644 // phospholipid metabolism // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay --- 571.1279296875 527.943359375 621.185363769531 612.226928710938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL126W /GEN=SCS3 /DB_XREF=GI:6321312 /SEG=NC_001139:+271001,272143 /DEF=Required for inositol prototrophy /NOTE=Scs3p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: phospholipid metabolism [goid GO:0006644] [evidence IMP] [pmid 7706223] --- --- --- --- --- S0003094 // span:9-31,51-69,90-112,232-254,325-347 // numtm:5 S0003094 // SCS3 SGDID:S0003094, Chr VII from 271003-272145, Verified ORF // sgd // 11 // --- /// GENSCAN00000019255 // cdna:Genscan chromosome:SGD1:VII:271003:272145:1 // ensembl // 11 // --- /// GENEFINDER00000021548 // cdna:GeneFinder chromosome:SGD1:VII:271003:272145:1 // ensembl // 11 // --- /// YGL126W // cdna:known chromosome:SGD1:VII:271003:272145:1 gene:YGL126W // ensembl // 11 // --- --- No cerevisiae_gene -1.00598893551501 -1.08179773368799 1.36225356297075 1.08764662255166 1.07196110868878 Max fold change below threshold 4 1.36225356297075 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775523_at YLR370C.S1 Subunit of the ARP2/3 complex, which is required for the motility and integrity of cortical actin patches 1.36196357627305 1714.16418457031 2076.87054443359 ARC18 1 // mitochondrion inheritance // traceable author statement /// 7015 // actin filament organization // inferred from mutant phenotype 5885 // Arp2/3 protein complex // inferred from direct assay 5200 // structural constituent of cytoskeleton // traceable author statement 2026.26330566406 1487.75146484375 1940.57690429688 2127.47778320313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR370C /GEN=ARC18 /DB_XREF=GI:6323402 /SEG=NC_001144:-861717,862253 /DEF=Arp2/3 complex subunit /NOTE=Arc18p; go_component: Arp2/3 protein complex [goid GO:0005885] [evidence IDA] [pmid 10377407]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence TAS] [pmid 10377407]; go_process: actin filament organization [goid GO:0007015] [evidence IMP] [pmid 10377407] --- --- --- --- --- --- S0004362 // ARC18 SGDID:S0004362, Chr XII from 862253-861717, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018099 // cdna:Genscan chromosome:SGD1:XII:861717:862253:-1 // ensembl // 11 // --- /// YLR370C // cdna:known chromosome:SGD1:XII:861717:862253:-1 gene:YLR370C // ensembl // 11 // --- --- No cerevisiae_gene -1.11273114152494 -1.36196357627305 1.32922320294854 -1.04415511757223 1.04995129569594 Max fold change below threshold 4 1.36196357627305 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769514_at YJL165C.S1 Putative protein kinase; overexpression increases sodium and lithium tolerance, whereas gene disruption increases cation and low pH sensitivity and impairs potassium uptake, suggesting a role in regulation of Trk1p and/or Trk2p transporters 1.36138506336707 2179.86315917969 1700.84405517578 HAL5 30003 // cation homeostasis // inferred from genetic interaction /// 30003 // cation homeostasis // inferred from mutant phenotype --- 4672 // protein kinase activity // inferred from sequence similarity 1664.69848632813 2266.29565429688 2093.4306640625 1736.98962402344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL165C /GEN=HAL5 /DB_XREF=GI:6322296 /SEG=NC_001142:-106887,109454 /DEF=Putative protein kinase; overexpression increases sodium and lithium tolerance, whereas gene disruption increases cation and low pH sensitivity and impairs potassium uptake, suggesting a role in regulation of Trk1p and/or Trk2p transporters /NOTE=Hal5p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 10207057]; go_process: cation homeostasis [goid GO:0030003] [evidence IGI,IMP] [pmid 10207057] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 3.0E-49 /// ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-51 /// hanks // 2.2.12 // CaMK Group; CaMK II KIN1/SNF1/Nim1; YCL24 // 1.0E-54 /// hanks // 2.2.12 // CaMK Group; CaMK II KIN1/SNF1/Nim1; YCL24 // 7.0E-57 --- --- S0003701 // HAL5 SGDID:S0003701, Chr X from 109454-106887, reverse complement, Verified ORF // sgd // 11 // --- /// U15300 // Saccharomyces cerevisiae Hal5p (HAL5) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000024012 // cdna:Genscan chromosome:SGD1:X:106887:109454:-1 // ensembl // 11 // --- /// GENEFINDER00000024387 // cdna:GeneFinder chromosome:SGD1:X:106887:109454:-1 // ensembl // 11 // --- /// YJL165C // cdna:known chromosome:SGD1:X:106887:109454:-1 gene:YJL165C // ensembl // 11 // --- --- No cerevisiae_gene -1.17286007290421 1.36138506336707 1.15881723607688 1.25754344180371 1.04342596469512 Max fold change below threshold 4 1.36138506336707 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772019_at YJR025C.S1 3-hydroxyanthranilic acid dioxygenase, required for biosynthesis of nicotinic acid from tryptophan via kynurenine pathway 1.36112563879569 2463.69653320313 2859.20874023438 BNA1 9435 // NAD biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 334 // 3-hydroxyanthranilate 3,4-dioxygenase activity // inferred from direct assay /// 334 // 3-hydroxyanthranilate 3,4-dioxygenase activity // traceable author statement 2906.26708984375 2197.61499023438 2729.77807617188 2812.150390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR025C /GEN=BNA1 /DB_XREF=GI:6322485 /SEG=NC_001142:-471052,471585 /DEF=3-hydroxyanthranilic acid dioxygenase, required for biosynthesis of nicotinic acid from tryptophan via kynurenine pathway /NOTE=Bna1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11901108]; go_function: 3-hydroxyanthranilate 3,4-dioxygenase activity [goid GO:0000334] [evidence TAS] [pmid 12062417]; go_function: 3-hydroxyanthranilate 3,4-dioxygenase activity [goid GO:0000334] [evidence IDA] [pmid 9539135]; go_process: NAD biosynthesis [goid GO:0009435] [evidence IMP] [pmid 11901108] --- --- --- ec // 3HAO_YEAST // (P47096) 3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6) (3-HAO) (3-hydroxyanthranilic acid dioxygenase) (3-hydroxyanthranilate oxygenase) // 1.0E-113 --- --- S0003786 // BNA1 SGDID:S0003786, Chr X from 471585-471052, reverse complement, Verified ORF // sgd // 11 // --- /// YJR025C // cdna:known chromosome:SGD1:X:471052:471585:-1 gene:YJR025C // ensembl // 11 // --- --- No cerevisiae_gene -1.36112563879569 -1.32246417264099 -1.17386697948565 -1.06465324606877 -1.03346787552064 Max fold change below threshold 4 1.36112563879569 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772103_at YIL083C.S1 Homolog to human PPCS 1.36099717188786 1828.66571044922 1466.31488037109 --- 15937 // coenzyme A biosynthesis // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4632 // phosphopantothenate-cysteine ligase activity // inferred from sequence similarity 1459.82189941406 1670.51794433594 1986.8134765625 1472.80786132813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL083C /GEN=SDS3 /DB_XREF=GI:6322108 /SEG=NC_001141:-203553,204650 /DEF=Homolog to human PPCS /NOTE=Yil083cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14690591]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_function: phosphopantothenate-cysteine ligase activity [goid GO:0004632] [evidence ISS] [pmid 11923312]; go_process: coenzyme A biosynthesis [goid GO:0015937] [evidence ISS] [pmid 11923312] --- --- --- --- --- --- S0001345 // YIL083C SGDID:S0001345, Chr IX from 204650-203553, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016413 // cdna:Genscan chromosome:SGD1:IX:203553:204650:-1 // ensembl // 11 // --- /// GENEFINDER00000019147 // cdna:GeneFinder chromosome:SGD1:IX:203553:204650:-1 // ensembl // 11 // --- /// YIL083C // cdna:known chromosome:SGD1:IX:203553:204650:-1 gene:YIL083C // ensembl // 11 // --- --- No cerevisiae_gene 1.24241890594765 1.14432996587217 1.11313360026511 1.36099717188786 1.00889557960411 Max fold change below threshold 4 1.36099717188786 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772934_at YBR269C.S1 The authentic, non-tagged protein was localized to the mitochondria 1.36038655951342 3054.88940429688 2237.53747558594 --- --- 5739 // mitochondrion // inferred from direct assay --- 2260.65307617188 3075.36206054688 3034.41674804688 2214.421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR269C /GEN=MRPL37 /DB_XREF=GI:41629680 /SEG=NC_001134:-742117,742533 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ybr269cp --- --- --- --- --- --- S0000473 // FMP21 SGDID:S0000473, Chr II from 742571-742155, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021353 // cdna:Genscan chromosome:SGD1:II:742155:742571:-1 // ensembl // 11 // --- /// YBR269C // cdna:known chromosome:SGD1:II:742155:742571:-1 gene:YBR269C // ensembl // 11 // --- GENEFINDER00000022367 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.27240075277976 1.36038655951342 1.33144988976347 1.34227439850491 -1.02087732319384 Max fold change below threshold 4 1.36038655951342 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777628_at YOR085W.S1 Gamma subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes asparagine-linked glycosylation of newly synthesized proteins; Ost3p is important for N-glycosylation of a subset of proteins 1.35985351084257 790.266540527344 704.4326171875 OST3 6461 // protein complex assembly // inferred from mutant phenotype /// 6486 // protein amino acid glycosylation // inferred from mutant phenotype /// 6487 // N-linked glycosylation // inferred from physical interaction 8250 // oligosaccharyl transferase complex // inferred from physical interaction /// 16021 // integral to membrane // inferred from mutant phenotype 4579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from mutant phenotype /// 4579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from physical interaction 688.844177246094 687.099304199219 893.433776855469 720.021057128906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR085W /GEN=OST3 /DB_XREF=GI:6324659 /SEG=NC_001147:+482034,483086 /DEF=Gamma subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes aspargine-linked glycosylation of newly synthesized proteins; Ost3p is important for N-glycosylation of a subset of proteins /NOTE=Ost3p; go_component: integral to membrane [goid GO:0016021] [evidence IMP] [pmid 7622558]; go_component: oligosaccharyl transferase complex [goid GO:0008250] [evidence IPI] [pmid 10358084]; go_function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity [goid GO:0004579] [evidence IMP] [pmid 7622558]; go_function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity [goid GO:0004579] [evidence IPI] [pmid 9405463]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IPI] [pmid 9405463]; go_process: protein amino acid glycosylation [goid GO:0006486] [evidence IMP] [pmid 7622558]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP] [pmid 10358084] --- --- --- --- --- S0005611 // span:186-203,216-238,266-288,311-333 // numtm:4 S0005611 // OST3 SGDID:S0005611, Chr XV from 482034-483086, Verified ORF // sgd // 11 // --- /// GENSCAN00000017525 // cdna:Genscan chromosome:SGD1:XV:482034:483086:1 // ensembl // 11 // --- /// GENEFINDER00000022785 // cdna:GeneFinder chromosome:SGD1:XV:482100:483086:1 // ensembl // 11 // --- /// YOR085W // cdna:known chromosome:SGD1:XV:482034:483086:1 gene:YOR085W // ensembl // 11 // --- --- No cerevisiae_gene 1.35985351084257 -1.00253947724326 1.00408567304887 1.29700417941732 1.04525969865558 Max fold change below threshold 4 1.35985351084257 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774226_at YGR012W.S1 Hypothetical protein 1.35952581538886 533.112823486328 651.301818847656 --- --- 5739 // mitochondrion // inferred from direct assay 4124 // cysteine synthase activity // inferred from sequence similarity 627.908996582031 461.858825683594 604.366821289063 674.694641113281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR012W /GEN=NMA2 /DB_XREF=GI:6321449 /SEG=NC_001139:+513161,514342 /DEF=Hypothetical ORF /NOTE=Ygr012wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: cysteine synthase activity [goid GO:0004124] [evidence ISS] [pmid 10592175]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003244 // span:12-31 // numtm:1 S0003244 // YGR012W SGDID:S0003244, Chr VII from 513163-514344, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019350 // cdna:Genscan chromosome:SGD1:VII:513163:514344:1 // ensembl // 11 // --- /// GENEFINDER00000021419 // cdna:GeneFinder chromosome:SGD1:VII:513163:520867:1 // ensembl // 11 // --- /// YGR012W // cdna:known chromosome:SGD1:VII:513163:514344:1 gene:YGR012W // ensembl // 11 // --- --- No cerevisiae_gene 1.02977567009644 -1.35952581538886 1.16763314809848 -1.03895345419981 1.07451023123721 Max fold change below threshold 4 1.35952581538886 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779234_at YDR329C.S1 Peroxisomal membrane protein (PMP) required to recruit Pex19p chaperone to peroxisomes; plays selective, essential, direct role in PMP import as a docking factor for Pex19p 1.35898224641361 906.3212890625 1148.81549072266 PEX3 6625 // protein-peroxisome targeting // inferred from mutant phenotype /// 7031 // peroxisome organization and biogenesis // traceable author statement /// 45046 // peroxisome membrane protein import // inferred from mutant phenotype 5778 // peroxisomal membrane // inferred from direct assay 5515 // protein binding // inferred from direct assay 1084.51428222656 875.156188964844 937.486389160156 1213.11669921875 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR329C /GEN=PEX3 /DB_XREF=GI:6320536 /SEG=NC_001136:-1126261,1127586 /DEF=48-kDa peroxisomal integral membrane protein /NOTE=Pex3p; go_component: peroxisomal membrane [goid GO:0005778] [evidence IDA] [pmid 1894692]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence TAS]; go_process: protein-peroxisome targeting [goid GO:0006625] [evidence IMP] [pmid 10637226] --- --- --- --- --- S0002737 // span:17-39 // numtm:1 S0002737 // PEX3 SGDID:S0002737, Chr IV from 1127588-1126263, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023770 // cdna:GeneFinder chromosome:SGD1:IV:1126263:1127588:-1 // ensembl // 11 // --- /// GENSCAN00000025358 // cdna:Genscan chromosome:SGD1:IV:1126263:1127588:-1 // ensembl // 11 // --- /// YDR329C // cdna:known chromosome:SGD1:IV:1126263:1127588:-1 gene:YDR329C // ensembl // 11 // --- --- No cerevisiae_gene -1.35898224641361 -1.23922369046987 1.08474449596205 -1.15683202952751 1.11858065781131 Max fold change below threshold 4 1.35898224641361 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775244_at YDR316W.S1 Protein integral to the mitochondrial membrane; has a conserved methyltransferase motif; multicopy suppressor of respiratory defects caused by OXA1 mutations 1.3588469094346 520.054046630859 658.897521972656 OMS1 --- 5739 // mitochondrion // inferred from direct assay /// 5740 // mitochondrial membrane // inferred from direct assay 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from sequence similarity 616.462768554688 461.373962402344 578.734130859375 701.332275390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR316W /GEN=IPK1 /DB_XREF=GI:6320522 /SEG=NC_001136:+1093756,1095171 /DEF=Ydr316wp /NOTE=Ipk1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10390371]; go_function: inositol/phosphatidylinositol kinase activity [goid GO:0004428] [evidence IDA,IMP] [pmid 10390371]; go_process: myo-inositol metabolism [goid GO:0006020] [evidence IDA,IGI,IMP] [pmid 10390371] --- --- --- --- --- S0002724 // span:104-123 // numtm:1 S0002724 // OMS1 SGDID:S0002724, Chr IV from 1093758-1095173, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000025344 // cdna:Genscan chromosome:SGD1:IV:1094070:1095173:1 // ensembl // 10 // --- /// YDR316W // cdna:known chromosome:SGD1:IV:1093758:1095173:1 gene:YDR316W // ensembl // 10 // --- --- No cerevisiae_gene -1.16581651615894 -1.33614555391207 1.3588469094346 -1.06519165828234 1.1376717478574 Max fold change below threshold 4 1.3588469094346 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771305_at YGR282C.S1 Endo-beta-1,3-glucanase, major protein of the cell wall, involved in cell wall maintenance 1.3587728118372 5307.96215820313 5105.84765625 BGL2 7047 // cell wall organization and biogenesis // traceable author statement 9277 // cell wall (sensu Fungi) // traceable author statement 4338 // glucan 1,3-beta-glucosidase activity // traceable author statement 5882.45458984375 6236.37646484375 4379.5478515625 4329.24072265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR282C /GEN=BGL2 /DB_XREF=GI:6321721 /SEG=NC_001139:-1057788,1058729 /DEF=Cell wall endo-beta-1,3-glucanase /NOTE=Bgl2p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence TAS] [pmid 8458852]; go_function: glucan 1,3-beta-glucosidase activity [goid GO:0004338] [evidence TAS] [pmid 8458852]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence TAS] [pmid 8458852] --- --- --- --- --- --- S0003514 // BGL2 SGDID:S0003514, Chr VII from 1058730-1057789, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019558 // cdna:Genscan chromosome:SGD1:VII:1057789:1058730:-1 // ensembl // 11 // --- /// GENEFINDER00000021762 // cdna:GeneFinder chromosome:SGD1:VII:1057789:1058730:-1 // ensembl // 11 // --- /// YGR282C // cdna:known chromosome:SGD1:VII:1057789:1058730:-1 gene:YGR282C // ensembl // 11 // --- --- No cerevisiae_gene -1.17098909887451 1.06016567907061 -1.32031644369628 -1.34316481728703 -1.3587728118372 Max fold change below threshold 4 1.3587728118372 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778598_at YDR469W.S1 Subunit of the COMPASS (Set1C) complex, which methylates Rad6p ubiquitinated histone H3 on lysine 4 and is required in transcriptional silencing near telomeres; has similarity to C. elegans Dpy-30 1.35829830474496 256.482055664063 187.584022521973 SDC1 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 16571 // histone methylation // inferred from direct assay /// 16571 // histone methylation // inferred from mutant phenotype 48188 // COMPASS complex // inferred from physical interaction 42800 // histone lysine N-methyltransferase activity (H3-K4 specific) // inferred from mutant phenotype /// 42800 // histone lysine N-methyltransferase activity (H3-K4 specific) // inferred from direct assay 190.586456298828 258.873260498047 254.090850830078 184.581588745117 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR469W /GEN=SDC1 /DB_XREF=GI:6320677 /SEG=NC_001136:+1399003,1399530 /DEF=Subunit of the COMPASS complex, which methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres; has similarity to C. elegans Dpy-30 /NOTE=Sdc1p; go_component: COMPASS complex [goid GO:0048188] [evidence IPI] [pmid 11805083]; go_component: nuclear chromatin [goid GO:0000790] [evidence IMP] [pmid 11687631]; go_function: chromatin binding [goid GO:0003682] [evidence IMP] [pmid 11687631]; go_function: histone lysine N-methyltransferase activity (H3-K4 specific) [goid GO:0042800] [evidence IDA] [pmid 11742990]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 11687631]; go_process: histone methylation [goid GO:0016571] [evidence IDA] [pmid 11742990] --- --- --- --- --- --- S0002877 // SDC1 SGDID:S0002877, Chr IV from 1399005-1399532, Verified ORF // sgd // 11 // --- /// GENSCAN00000025467 // cdna:Genscan chromosome:SGD1:IV:1399005:1399532:1 // ensembl // 11 // --- /// YDR469W // cdna:known chromosome:SGD1:IV:1399005:1399532:1 gene:YDR469W // ensembl // 11 // --- --- No cerevisiae_gene 1.26838602579895 1.35829830474496 1.25605475108072 1.33320518028668 -1.03253232131403 Max fold change below threshold 4 1.35829830474496 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769914_at YDR076W.S1 Protein that stimulates strand exchange by stabilizing the binding of Rad51p to single-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; forms heterodimer with Rad57p 1.35806759831469 69.0100898742676 52.7222919464111 RAD55 707 // meiotic DNA recombinase assembly // traceable author statement /// 730 // DNA recombinase assembly // inferred from direct assay /// 730 // DNA recombinase assembly // traceable author statement /// 45002 // double-strand break repair via single-strand annealing // inferred from mutant phenotype /// 45003 // double-strand break repair via synthesis-dependent strand annealing // traceable author statement 5634 // nucleus // inferred from physical interaction 5515 // protein binding // inferred from physical interaction 57.5871124267578 72.0196151733398 66.0005645751953 47.8574714660645 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR076W /GEN=RAD55 /DB_XREF=GI:6320281 /SEG=NC_001136:+598463,599683 /DEF=Protein that stimulates strand exchange by stabilizing the binding of Rad51p to single-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; forms heterodimer with Rad57p /NOTE=Rad55p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 10943844]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 9159392]; go_process: DNA recombinase assembly [goid GO:0000730] [evidence IDA,TAS] [pmid 11459983]; go_process: double-strand break repair via break-induced replication [goid GO:0000727] [evidence IMP] [pmid 11238940]; go_process: double-strand break repair via single-strand annealing [goid GO:0045002] [evidence IMP] [pmid 8849880]; go_process: double-strand break repair via synthesis-dependent strand annealing [goid GO:0045003] [evidence TAS] [pmid 10357855]; go_process: meiotic DNA recombinase assembly [goid GO:0000707] [evidence TAS] [pmid 11459983] --- --- --- --- --- --- S0002483 // RAD55 SGDID:S0002483, Chr IV from 598464-599684, Verified ORF // sgd // 11 // --- /// GENSCAN00000025153 // cdna:Genscan chromosome:SGD1:IV:598464:599684:1 // ensembl // 11 // --- /// YDR076W // cdna:known chromosome:SGD1:IV:598464:599684:1 gene:YDR076W // ensembl // 11 // --- --- No cerevisiae_gene -1.23810892289452 1.25062035824314 1.35806759831469 1.14609956627254 -1.2033045345405 Max fold change below threshold 4 1.35806759831469 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779468_at YLR420W.S1 Dihydrooratase, catalyzes the third enzymatic step in the de novo biosynthesis of pyrimidines, converting carbamoyl-L-aspartate into dihydroorotate 1.35798211317734 1046.65249633789 948.669281005859 URA4 6207 // 'de novo' pyrimidine base biosynthesis // traceable author statement /// 6221 // pyrimidine nucleotide biosynthesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4151 // dihydroorotase activity // inferred from mutant phenotype /// 4151 // dihydroorotase activity // inferred from sequence similarity 916.29736328125 848.989562988281 1244.3154296875 981.041198730469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR420W /GEN=URA4 /DB_XREF=GI:6323452 /SEG=NC_001144:+963781,964875 /DEF=Third step in pyrimidine biosynthesis pathway /NOTE=Ura4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: dihydroorotase activity [goid GO:0004151] [evidence IMP,ISS] [pmid 2897615]; go_process: pyrimidine nucleotide biosynthesis [goid GO:0006221] [evidence IMP] [pmid 2897615] --- --- --- --- --- --- S0004412 // URA4 SGDID:S0004412, Chr XII from 963781-964875, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024852 // cdna:GeneFinder chromosome:SGD1:XII:963781:964875:1 // ensembl // 11 // --- /// GENSCAN00000018136 // cdna:Genscan chromosome:SGD1:XII:963901:964875:1 // ensembl // 11 // --- /// YLR420W // cdna:known chromosome:SGD1:XII:963781:964875:1 gene:YLR420W // ensembl // 11 // --- --- No cerevisiae_gene 1.26844155608856 -1.07927989132877 1.2474790536173 1.35798211317734 1.07065810515636 Max fold change below threshold 4 1.35798211317734 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778777_at YBR078W.S1 GPI-anchored protein of unknown function, has a possible role in apical bud growth; GPI-anchoring on the plasma membrane crucial to function; similar to Sps2p and Pst1p 1.35798122538715 5156.91186523438 4082.23181152344 ECM33 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay /// 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 4442.61767578125 5795.21630859375 4518.607421875 3721.84594726563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR078W /GEN=ECM33 /DB_XREF=GI:6319552 /SEG=NC_001134:+393081,394817 /DEF=GPI-anchored protein of unknown function, has a possible role in apical bud growth; GPI-anchoring on the plasma membrane crucial to function; similar to Sps2p and Pst1p /NOTE=Ecm33p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12583915]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584] --- --- --- --- --- S0000282 // span:407-429,434-456 // numtm:2 S0000282 // ECM33 SGDID:S0000282, Chr II from 393118-393175,393506-394854, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000021201 // cdna:Genscan chromosome:SGD1:II:393754:394854:1 // ensembl // 11 // --- /// GENEFINDER00000022158 // cdna:GeneFinder chromosome:SGD1:II:393754:394854:1 // ensembl // 11 // --- /// YBR078W // cdna:known chromosome:SGD1:II:393118:394854:1 gene:YBR078W // ensembl // 11 // --- --- No cerevisiae_gene 1.21470616908471 1.30445983236103 -1.35798122538715 1.01710472330491 -1.19365974269977 Max fold change below threshold 4 1.35798122538715 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773657_at YBR146W.S1 Mitochondrial ribosomal protein of the small subunit 1.35787052184529 1397.09136962891 1836.28741455078 MRPS9 6412 // protein biosynthesis // traceable author statement /// 6412 // protein biosynthesis // inferred from direct assay 5763 // mitochondrial small ribosomal subunit // traceable author statement /// 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // traceable author statement /// 3735 // structural constituent of ribosome // inferred from direct assay 1800.99926757813 1326.34094238281 1467.841796875 1871.57556152344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR146W /GEN=MRPS9 /DB_XREF=GI:6319622 /SEG=NC_001134:+535216,536052 /DEF=Mitochondrial ribosomal protein of the small subunit /NOTE=Mrps9p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 11278769]; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 11278769]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 11278769]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0000350 // MRPS9 SGDID:S0000350, Chr II from 535254-536090, Verified ORF // sgd // 11 // --- /// GENSCAN00000021257 // cdna:Genscan chromosome:SGD1:II:535254:536090:1 // ensembl // 11 // --- /// GENEFINDER00000022177 // cdna:GeneFinder chromosome:SGD1:II:535305:536090:1 // ensembl // 11 // --- /// YBR146W // cdna:known chromosome:SGD1:II:535254:536090:1 gene:YBR146W // ensembl // 11 // --- --- No cerevisiae_gene 1.00470062396188 -1.35787052184529 1.06717285990186 -1.2269709660894 1.03918729741641 Max fold change below threshold 4 1.35787052184529 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774805_at YCR020C.S1 Protein required for respiratory growth and stability of the mitochondrial genome 1.35759237496983 700.439361572266 928.507080078125 PET18 6772 // thiamin metabolism // inferred from expression pattern /// 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype --- --- 937.713928222656 690.718322753906 710.160400390625 919.300231933594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR020C /GEN=PET18 /DB_XREF=GI:6319866 /SEG=NC_001135:-154009,154656 /DEF=Protein required for respiratory growth and stability of the mitochondrial genome /NOTE=Pet18p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence IMP] [pmid 3916862]; go_process: thiamin metabolism [goid GO:0006772] [evidence IEP] [pmid 10383756] --- --- --- --- --- --- S0000613 // PET18 SGDID:S0000613, Chr III from 154656-154009, reverse complement, Verified ORF // sgd // 11 // --- /// YCR020C // cdna:known chromosome:SGD1:III:154009:154656:-1 gene:YCR020C // ensembl // 11 // --- --- No cerevisiae_gene -1.09636662356655 -1.35759237496983 -1.05553782222972 -1.32042553725449 -1.02003012253171 Max fold change below threshold 4 1.35759237496983 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778877_at YNL097C.S1 Probable component of the Rpd3 histone deacetylase complex, involved in transcriptional regulation of PHO5; C-terminus has similarity to human candidate tumor suppressor p33(ING1) 1.35722524555373 1061.87088012695 1190.1904296875 PHO23 16568 // chromatin modification // inferred from mutant phenotype /// 16568 // chromatin modification // inferred from physical interaction /// 16568 // chromatin modification // inferred from sequence similarity 118 // histone deacetylase complex // inferred from direct assay /// 5634 // nucleus // inferred from direct assay 4407 // histone deacetylase activity // inferred from direct assay 1166.69555664063 895.796447753906 1227.9453125 1213.68530273438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL097C /GEN=PHO23 /DB_XREF=GI:6324232 /SEG=NC_001146:-441366,442358 /DEF=Probable component of the Rpd3 histone deacetylase complex, involved in transcriptional regulation of PHO5; C-terminus has similarity to human candidate tumor suppressor p33(ING1) /NOTE=Pho23p; go_component: histone deacetylase complex [goid GO:0000118] [evidence IDA] [pmid 12672825]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: histone deacetylase activity [goid GO:0004407] [evidence IDA] [pmid 12672825]; go_process: chromatin modification [goid GO:0016568] [evidence IMP,IPI,ISS] [pmid 10805724] --- --- --- --- --- --- S0005041 // PHO23 SGDID:S0005041, Chr XIV from 442358-441366, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000019956 // cdna:Genscan chromosome:SGD1:XIV:441366:442358:-1 // ensembl // 10 // --- /// GENEFINDER00000020575 // cdna:GeneFinder chromosome:SGD1:XIV:441366:442358:-1 // ensembl // 10 // --- /// YNL097C // cdna:known chromosome:SGD1:XIV:441366:442358:-1 gene:YNL097C // ensembl // 10 // --- YNL097W-A // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene -1.35722524555373 -1.30241145693976 -1.13346773954448 1.05249849072515 1.04027592787707 Max fold change below threshold 4 1.35722524555373 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776509_at YKL189W.S1 Component of the RAM signaling network that is involved in regulation of Ace2p activity and cellular morphogenesis, interacts with Kic1p and Sog2p, localizes to sites of polarized growth during budding and during the mating response 1.35676446229927 616.585845947266 804.334533691406 HYM1 903 // cellular morphogenesis during vegetative growth // inferred from genetic interaction /// 7109 // cytokinesis, completion of separation // inferred from mutant phenotype /// 8360 // regulation of cell shape // inferred from genetic interaction /// 45449 // regulation of transcription // inferred from mutant phenotype 131 // incipient bud site // inferred from direct assay /// 5622 // intracellular // inferred from direct assay /// 5933 // bud // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay --- 822.221374511719 627.155395507813 606.016296386719 786.447692871094 0.000244141003349796 0.00195312988944352 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL189W /GEN=HYM1 /DB_XREF=GI:6322659 /SEG=NC_001143:+84709,85908 /DEF=Component of the RAM signaling network that is involved in regulation of Ace2p activity and cellular morphogenesis, interacts with Kic1p and Sog2p, localizes to sites of polarized growth during budding and during the mating response /NOTE=Hym1p; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 12972564]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 12972564]; go_component: intracellular [goid GO:0005622] [evidence IDA] [pmid 11259593]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 12972564]; go_function: transcriptional repressor activity [goid GO:0016564] [evidence IMP] [pmid 11259593]; go_process: cytokinesis, completion of separation [goid GO:0007109] [evidence IMP] [pmid 11259593]; go_process: regulation of cell shape [goid GO:0008360] [evidence IGI] [pmid 11259593] --- --- --- --- --- --- S0001672 // HYM1 SGDID:S0001672, Chr XI from 84709-85908, Verified ORF // sgd // 11 // --- /// GENSCAN00000018276 // cdna:Genscan chromosome:SGD1:XI:84742:85908:1 // ensembl // 11 // --- /// YKL189W // cdna:known chromosome:SGD1:XI:84709:85908:1 gene:YKL189W // ensembl // 11 // --- --- No cerevisiae_gene -1.24597063302266 -1.31103292804483 -1.02475589612469 -1.35676446229927 -1.04548768082722 Max fold change below threshold 4 1.35676446229927 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774632_at SPAC23G3.05c.S1 --- 1.35675078939089 --- --- --- --- 10.7318668365479 11.7699937820435 11.9496946334839 7.90997648239136 0.030273400247097 0.0375977009534836 0.014160200022161 0.00585938012227416 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC23G3.05c /DEF=regulator of G-protein signaling (RGS) domain (inferred from context) --- --- --- --- --- --- SPAC23G3.05c // |||regulator of G-protein signaling |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.13168937699199 1.09673311841331 -1.09935628154017 1.11347772158229 -1.35675078939089 Max fold change below threshold 4 1.35675078939089 Max fold change below threshold PPPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1773582_at YGL197W.S1 Protein with an N-terminal kelch-like domain, putative negative regulator of early meiotic gene expression; required, with Pmd1p, for growth under alkaline conditions 1.35664048631422 1031.88177490234 1009.20440673828 MDS3 42174 // negative regulation of sporulation // inferred from genetic interaction /// 42174 // negative regulation of sporulation // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 938.299926757813 879.797119140625 1183.96643066406 1080.10888671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL197W /GEN=MDS3 /DB_XREF=GI:6321241 /SEG=NC_001139:+124701,129164 /DEF=Mck1 Dosage Suppressor 3; negative regulator of early meiotic gene expression /NOTE=Mds3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: sporulation [goid GO:0030435] [evidence IGI,IMP] [pmid 9383076] --- --- --- --- --- --- S0003165 // MDS3 SGDID:S0003165, Chr VII from 124703-129166, Verified ORF // sgd // 11 // --- /// GENSCAN00000019201 // cdna:Genscan chromosome:SGD1:VII:124703:129166:1 // ensembl // 11 // --- /// GENEFINDER00000021589 // cdna:GeneFinder chromosome:SGD1:VII:126287:129166:1 // ensembl // 11 // --- /// YGL197W // cdna:known chromosome:SGD1:VII:124703:129166:1 gene:YGL197W // ensembl // 11 // --- --- No cerevisiae_gene -1.25699484229292 -1.06649579356924 1.35664048631422 1.26182087081166 1.15113393480797 Max fold change below threshold 4 1.35664048631422 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779377_at YER125W.S1 Ubiquitin-protein ligase involved in ubiquitin-mediated protein degradation; plays a role in heat shock element (HSE)-mediated gene expression and multivesicular body sorting; contains a hect (homologous to E6-AP carboxyl terminus) domain 1.35605957556354 2324.80969238281 2234.03393554688 RSP5 209 // protein polyubiquitination // inferred from direct assay /// 6333 // chromatin assembly or disassembly // inferred from mutant phenotype /// 6350 // transcription // traceable author statement /// 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 6513 // protein monoubiquitination // inferred from direct assay /// 6897 // endocytosis // traceable author statement /// 10142 // mevalonate pathway // inferred from mutant phenotype 151 // ubiquitin ligase complex // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5794 // Golgi apparatus // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay /// 10008 // endosome membrane // inferred from direct assay 4842 // ubiquitin-protein ligase activity // inferred from direct assay 2264.71997070313 2455.29858398438 2194.32080078125 2203.34790039063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER125W /GEN=RSP5 /DB_XREF=GI:6320972 /SEG=NC_001137:+410185,412614 /DEF=involved in ubiquitin-mediated protein degradation /NOTE=Rsp5p; go_component: ubiquitin ligase complex [goid GO:0000151] [evidence IDA] [pmid 9108033]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence IDA] [pmid 9108033]; go_process: chromatin assembly/disassembly [goid GO:0006333] [evidence IMP] [pmid 12399376]; go_process: protein monoubiquitination [goid GO:0006513] [evidence IDA] [pmid 9108033]; go_process: protein polyubiquitination [goid GO:0000209] [evidence IDA] [pmid 9108033] --- --- --- --- --- --- S0000927 // RSP5 SGDID:S0000927, Chr V from 410185-412614, Verified ORF // sgd // 11 // --- /// GENSCAN00000016906 // cdna:Genscan chromosome:SGD1:V:410557:412614:1 // ensembl // 11 // --- /// GENEFINDER00000019618 // cdna:GeneFinder chromosome:SGD1:V:410557:412614:1 // ensembl // 11 // --- /// YER125W // cdna:known chromosome:SGD1:V:410185:412614:1 gene:YER125W // ensembl // 11 // --- --- No cerevisiae_gene -1.35605957556354 1.08415107198533 -1.07384674227578 -1.03208244204622 -1.02785400812174 Max fold change below threshold 4 1.35605957556354 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778966_at YGR167W.S1 Clathrin light chain, subunit of the major coat protein involved in intracellular protein transport and endocytosis; thought to regulate clathrin function, two Clathrin heavy chains (CHC1) form the clathrin triskelion structural component 1.35583642128334 1299.72680664063 1274.44744873047 CLC1 6897 // endocytosis // traceable author statement /// 16192 // vesicle-mediated transport // traceable author statement 30125 // clathrin vesicle coat // traceable author statement 5198 // structural molecule activity // traceable author statement 1184.74951171875 1011.76708984375 1587.6865234375 1364.14538574219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR167W /GEN=CLC1 /DB_XREF=GI:6321606 /SEG=NC_001139:+832459,833160 /DEF=Clathrin light chain /NOTE=Clc1p; go_component: clathrin vesicle coat [goid GO:0030125] [evidence TAS] [pmid 9171338]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9171338]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence TAS] [pmid 9171338] --- --- --- --- --- --- S0003399 // CLC1 SGDID:S0003399, Chr VII from 832461-833162, Verified ORF // sgd // 11 // --- /// GENSCAN00000019472 // cdna:Genscan chromosome:SGD1:VII:832461:833162:1 // ensembl // 11 // --- /// GENEFINDER00000021769 // cdna:GeneFinder chromosome:SGD1:VII:832461:833162:1 // ensembl // 11 // --- /// YGR167W // cdna:known chromosome:SGD1:VII:832461:833162:1 gene:YGR167W // ensembl // 11 // --- --- No cerevisiae_gene 1.15599433226713 -1.17097059551691 1.35583642128334 1.34010312537221 1.15142093096387 Max fold change below threshold 4 1.35583642128334 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772618_at YLR351C.S1 Nit protein, one of two proteins in S. cerevisiae with similarity to the Nit domain of NitFhit from fly and worm and to the mouse and human Nit protein which interacts with the Fhit tumor suppressor; nitrilase superfamily member 1.35563825709773 1700.77783203125 1885.73461914063 NIT3 --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 16810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from sequence similarity 1853.51940917969 1493.98974609375 1907.56591796875 1917.94982910156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR351C /GEN=NIT3 /DB_XREF=GI:6323383 /SEG=NC_001144:-829488,830363 /DEF=Nit protein, one of two proteins in S. cerevisiae with similarity to the Nit domain of NitFhit from fly and worm and to the mouse and human Nit protein which interacts with the Fhit tumor suppressor; nitrilase superfamily member /NOTE=Nit3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [goid GO:0016810] [evidence ISS] [pmid 11380987]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004343 // NIT3 SGDID:S0004343, Chr XII from 830363-829488, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018086 // cdna:Genscan chromosome:SGD1:XII:829488:830288:-1 // ensembl // 11 // --- /// GENEFINDER00000024840 // cdna:GeneFinder chromosome:SGD1:XII:829488:830288:-1 // ensembl // 11 // --- /// YLR351C // cdna:known chromosome:SGD1:XII:829488:830363:-1 gene:YLR351C // ensembl // 11 // --- --- No cerevisiae_gene -1.35563825709773 -1.24065068988993 -1.12084002300139 1.02915885774996 1.03476112502668 Max fold change below threshold 4 1.35563825709773 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779668_at YDR115W.S1 Putative mitochondrial ribosomal protein of the large subunit, has similarity to E. coli L34 ribosomal protein; required for respiratory growth, as are most mitochondrial ribosomal proteins 1.3555641171641 875.827758789063 877.871856689453 --- 6412 // protein biosynthesis // inferred from physical interaction /// 9060 // aerobic respiration // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from expression pattern 5762 // mitochondrial large ribosomal subunit // inferred from sequence similarity 3735 // structural constituent of ribosome // inferred from sequence similarity 857.214904785156 808.265808105469 943.389709472656 898.52880859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR115W /GEN=PDS1 /DB_XREF=GI:6320319 /SEG=NC_001136:+682169,682486 /DEF=Putative mitochondrial ribosomal protein of the large subunit, has similarity to E. coli L34 ribosomal protein; required for respiratory growth, as are most mitochondrial ribosomal proteins /NOTE=Ydr115wp; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence ISS] [pmid 12392552]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence ISS] [pmid 10929718]; go_process: aerobic respiration [goid GO:0009060] [evidence IEP,IMP] [pmid 10929718]; go_process: protein biosynthesis [goid GO:0006412] [evidence IPI] [pmid 12392552] --- --- --- --- --- --- S0002522 // YDR115W SGDID:S0002522, Chr IV from 682170-682487, Verified ORF // sgd // 11 // --- /// YDR115W // cdna:known chromosome:SGD1:IV:682170:682487:1 gene:YDR115W // ensembl // 11 // --- YDR114C // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene 1.09340032178895 -1.06056064253716 1.3555641171641 1.1005288221267 1.04819550334224 Max fold change below threshold 4 1.3555641171641 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771022_at YBR056W.S1 Hypothetical protein 1.35546170151139 3099.1865234375 2314.44165039063 --- --- 5737 // cytoplasm // inferred from direct assay --- 2385.37353515625 2965.09057617188 3233.28247070313 2243.509765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR056W /GEN=PRP6 /DB_XREF=GI:6319530 /SEG=NC_001134:+347839,349344 /DEF=Hypothetical ORF /NOTE=Ybr056wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000260 // YBR056W SGDID:S0000260, Chr II from 347877-349382, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021184 // cdna:Genscan chromosome:SGD1:II:347877:349382:1 // ensembl // 11 // --- /// GENEFINDER00000022160 // cdna:GeneFinder chromosome:SGD1:II:347877:349382:1 // ensembl // 11 // --- /// YBR056W // cdna:known chromosome:SGD1:II:347877:349382:1 gene:YBR056W // ensembl // 11 // --- --- No cerevisiae_gene -1.31538645617051 1.24302987874713 1.21674634537265 1.35546170151139 -1.06323296279111 Max fold change below threshold 4 1.35546170151139 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sp-28SrRNA-3_at AFFX-r2-Sp-28SrRNA-3 --- 1.35531282570546 --- --- --- --- 82.5326385498047 75.7312469482422 88.069953918457 60.895637512207 0.00195312988944352 0.00585938012227416 0.00195312988944352 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe /NOTE=CONTROL /DEF=Z19578 gi|288694:4190-7673 S.pombe gene encoding 18S, 5.8S, and 28S ribosomal RNA (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- SPRRNA.22 // |||18S, 5.8S, and 28S rRNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPRRNA.23 // |||18S, 5.8S, and 28S rRNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- /// SPRRNA.08 // |||18S, 5.8S, and 28S ribosomal RNA|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 11 // --- --- AFFX_control No 1.23155419655051 -1.08980958158804 -1.14636560415085 1.06709243113936 -1.35531282570546 Max fold change below threshold 4 1.35531282570546 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1775831_at YKL041W.S1 One of four subunits of the endosomal sorting complex required for transport III (ESCRT-III); forms an ESCRT-III subcomplex with Vps2p; involved in the sorting of transmembrane proteins into the multivesicular body (MVB) pathway 1.35478823001429 540.078094482422 641.083251953125 VPS24 43162 // ubiquitin-dependent protein catabolism via the multivesicular body pathway // inferred from curator /// 45324 // late endosome to vacuole transport // inferred from mutant phenotype 815 // ESCRT III complex // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 625.904968261719 461.994689941406 618.161499023438 656.261535644531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL041W /GEN=VPS24 /DB_XREF=GI:6322810 /SEG=NC_001143:+359787,360461 /DEF=involved in secretion /NOTE=Vps24p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9606181]; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 9606181]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: late endosome to vacuole transport [goid GO:0045324] [evidence IMP] [pmid 9606181] --- --- --- --- --- --- S0001524 // VPS24 SGDID:S0001524, Chr XI from 359787-360461, Verified ORF // sgd // 11 // --- /// GENSCAN00000018387 // cdna:Genscan chromosome:SGD1:XI:359787:360461:1 // ensembl // 11 // --- /// YKL041W // cdna:known chromosome:SGD1:XI:359787:360461:1 gene:YKL041W // ensembl // 11 // --- GENEFINDER00000023168 // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene -1.23922122181902 -1.35478823001429 1.1865043652126 -1.01252661197845 1.04850028186726 Max fold change below threshold 4 1.35478823001429 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771935_at YDR147W.S1 Ethanolamine kinase, primarily responsible for phosphatidylethanolamine synthesis via the CDP-ethanolamine pathway; also exhibits choline kinase activity 1.35472830826906 425.022277832031 467.237335205078 EKI1 6646 // phosphatidylethanolamine biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4103 // choline kinase activity // inferred from direct assay /// 4305 // ethanolamine kinase activity // inferred from direct assay 458.676574707031 511.469970703125 338.574584960938 475.798095703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR147W /GEN=EKI1 /DB_XREF=GI:6320351 /SEG=NC_001136:+751625,753229 /DEF=Ethanolamine kinase, primarily responsible for phosphatidylethanolamine synthesis via the CDP-ethanolamine pathway; also exhibits choline kinase activity /NOTE=Eki1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: choline kinase activity [goid GO:0004103] [evidence IDA] [pmid 10329685]; go_function: ethanolamine kinase activity [goid GO:0004305] [evidence IDA] [pmid 10329685]; go_process: phosphatidylethanolamine biosynthesis [goid GO:0006646] [evidence IMP] [pmid 10329685] --- --- --- --- --- --- S0002554 // EKI1 SGDID:S0002554, Chr IV from 751626-753230, Verified ORF // sgd // 11 // --- /// GENSCAN00000025206 // cdna:Genscan chromosome:SGD1:IV:751662:753230:1 // ensembl // 11 // --- /// GENEFINDER00000023611 // cdna:GeneFinder chromosome:SGD1:IV:751701:753230:1 // ensembl // 11 // --- /// YDR147W // cdna:known chromosome:SGD1:IV:751626:753230:1 gene:YDR147W // ensembl // 11 // --- --- No cerevisiae_gene -1.10240126814278 1.11509939444763 1.20565200838807 -1.35472830826906 1.03732809116539 Max fold change below threshold 4 1.35472830826906 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769428_at YOR175C.S1 Member of the MBOAT family of putative membrane-bound O-acyltransferases 1.35442449328261 722.735992431641 886.466461181641 --- --- 5783 // endoplasmic reticulum // inferred from direct assay 8374 // O-acyltransferase activity // inferred from sequence similarity 826.442810058594 610.180053710938 835.291931152344 946.490112304688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR175C /GEN=MED4 /DB_XREF=GI:6324749 /SEG=NC_001147:-659815,661674 /DEF=Hypothetical ORF /NOTE=Yor175cp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005701 // span:20-39,60-82,97-116,233-255,270-287,430-449,455-477 // numtm:7 S0005701 // YOR175C SGDID:S0005701, Chr XV from 661674-659815, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017595 // cdna:Genscan chromosome:SGD1:XV:659815:661674:-1 // ensembl // 11 // --- /// GENEFINDER00000022622 // cdna:GeneFinder chromosome:SGD1:XV:659815:661674:-1 // ensembl // 11 // --- /// YOR175C // cdna:known chromosome:SGD1:XV:659815:661674:-1 gene:YOR175C // ensembl // 11 // --- --- No cerevisiae_gene 1.23091858395433 -1.35442449328261 1.06977270087033 1.01070748149303 1.1452578457759 Max fold change below threshold 4 1.35442449328261 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772812_at YPL006W.S1 Vacuolar membrane protein that transits through the biosynthetic vacuolar protein sorting pathway, involved in sphingolipid metabolism; glycoprotein homologous to human Niemann Pick C1 (NPC) protein 1.35387859217914 2401.62585449219 2100.46051025391 NCR1 6665 // sphingolipid metabolism // inferred from mutant phenotype 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay 46624 // sphingolipid transporter activity // inferred from mutant phenotype 2015.89050292969 2159.07690429688 2644.1748046875 2185.03051757813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL006W /GEN=NCR1 /DB_XREF=GI:6325251 /SEG=NC_001148:+544626,548138 /DEF=A transmembrane glycoprotein that is homologous to human Niemann-Pick Type C (NPC) gene; involved in sphingolipid metabolism /NOTE=Ncr1p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14562095]; go_function: sphingolipid transporter activity [goid GO:0046624] [evidence IMP] [pmid 14970192]; go_process: sphingolipid metabolism [goid GO:0006665] [evidence IMP] [pmid 14970192] --- --- --- --- --- S0005927 // span:258-280,339-361,558-575,587-609,614-636,667-689,693-715,751-773,793-810,996-1018,1028-1050,1057-1079,1099-1121,1134-1156 // numtm:14 S0005927 // NCR1 SGDID:S0005927, Chr XVI from 544628-548140, Verified ORF // sgd // 11 // --- /// GENSCAN00000017179 // cdna:Genscan chromosome:SGD1:XVI:544628:548140:1 // ensembl // 11 // --- /// GENEFINDER00000020727 // cdna:GeneFinder chromosome:SGD1:XVI:544628:548140:1 // ensembl // 11 // --- /// YPL006W // cdna:known chromosome:SGD1:XVI:544628:548140:1 gene:YPL006W // ensembl // 11 // --- --- No cerevisiae_gene -1.22936504645654 1.07102885854122 1.35387859217914 1.31166588703341 1.08390337391968 Max fold change below threshold 4 1.35387859217914 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776663_at YNL213C.S1 Hypothetical protein 1.35361568378184 604.265350341797 687.584594726563 --- 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from sequence similarity --- 635.671081542969 512.872375488281 695.658325195313 739.498107910156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL213C /GEN=PEX17 /DB_XREF=GI:6324116 /SEG=NC_001146:-246459,247103 /DEF=Hypothetical ORF /NOTE=Ynl213cp; go_component: mitochondrion [goid GO:0005739] [evidence ISS] [pmid 10029995]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence IMP] [pmid 10029995] --- --- --- --- --- --- S0005157 // YNL213C SGDID:S0005157, Chr XIV from 247103-246459, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019871 // cdna:Genscan chromosome:SGD1:XIV:246459:247103:-1 // ensembl // 11 // --- /// YNL213C // cdna:known chromosome:SGD1:XIV:246459:247103:-1 gene:YNL213C // ensembl // 11 // --- --- No cerevisiae_gene 1.28896338732203 -1.23943326239355 1.35361568378184 1.09436836973413 1.16333451274072 Max fold change below threshold 4 1.35361568378184 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777840_at YBL030C.S1 Major ADP/ATP carrier of the mitochondrial inner membrane, exchanges cytosolic ADP for mitochondrially synthesized ATP; required for viability in many common lab strains carrying a mutation in the polymorphic SAL1 gene 1.35332146699763 6505.64038085938 5023.5830078125 PET9 6839 // mitochondrial transport // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from mutant phenotype /// 9061 // anaerobic respiration // inferred from genetic interaction 5743 // mitochondrial inner membrane // inferred from direct assay 5471 // ATP:ADP antiporter activity // inferred from direct assay 5542.9697265625 7501.419921875 5509.86083984375 4504.1962890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL030C /GEN=PET9 /DB_XREF=GI:6319441 /SEG=NC_001134:-163006,163962 /DEF=Major ADP/ATP carrier of the mitochondrial inner membrane, exchanges cytosolic ADP for mitochondrially synthesized ATP; required for viability of strains lacking a mitochondrial genome /NOTE=Pet9p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 795470]; go_function: ATP:ADP antiporter activity [goid GO:0005471] [evidence IDA] [pmid 8476415]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 2167309]; go_process: anaerobic respiration [goid GO:0009061] [evidence IGI] [pmid 1915842]; go_process: mitochondrial transport [goid GO:0006839] [evidence IMP] [pmid 2167309] --- --- --- --- --- S0000126 // span:126-148,189-211,226-248 // numtm:3 S0000126 // PET9 SGDID:S0000126, Chr II from 164000-163044, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021115 // cdna:Genscan chromosome:SGD1:II:163044:164000:-1 // ensembl // 11 // --- /// GENEFINDER00000022360 // cdna:GeneFinder chromosome:SGD1:II:163044:164000:-1 // ensembl // 11 // --- /// YBL030C // cdna:known chromosome:SGD1:II:163044:164000:-1 gene:YBL030C // ensembl // 11 // --- --- No cerevisiae_gene -1.07409351613609 1.35332146699763 -1.08279601307558 -1.00600902412622 -1.23062348326658 Max fold change below threshold 4 1.35332146699763 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776414_at YLR099C.S1 Protein of unknown function, null mutation leads to an increase in sensitivity to Calcofluor white; expression of the gene is induced in the presence of isooctane 1.35304133921913 1929.04577636719 1652.21545410156 ICT1 --- --- --- 1646.1318359375 2227.28442382813 1630.80712890625 1658.29907226563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR099C /GEN=ICT1 /DB_XREF=GI:6323128 /SEG=NC_001144:-339745,340929 /DEF=Protein of unknown function, null mutation leads to an increase in sensitivity to Calcofluor white; expression of the gene is induced in the presence of isooctane /NOTE=Ict1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004089 // ICT1 SGDID:S0004089, Chr XII from 340929-339745, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024599 // cdna:GeneFinder chromosome:SGD1:XII:337528:340929:-1 // ensembl // 10 // --- /// GENSCAN00000017896 // cdna:Genscan chromosome:SGD1:XII:339745:340929:-1 // ensembl // 11 // --- /// YLR099C // cdna:known chromosome:SGD1:XII:339745:340929:-1 gene:YLR099C // ensembl // 11 // --- --- No cerevisiae_gene 1.01559000770628 1.35304133921913 1.00725785592289 -1.00939700762869 1.00739141061639 Max fold change below threshold 4 1.35304133921913 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774317_at YHL002W.S1 Subunit of the endosomal Vps27p-Hse1p complex required for sorting of ubiquitinated membrane proteins into intralumenal vesicles prior to vacuolar degradation, as well as for recycling of Golgi proteins and formation of lumenal membranes 1.35285090009818 2107.63916015625 2079.84716796875 HSE1 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6623 // protein-vacuolar targeting // inferred from physical interaction 5768 // endosome // inferred from direct assay 5515 // protein binding // inferred from direct assay 2104.45288085938 2201.8623046875 2013.416015625 2055.24145507813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL002W /GEN=HSE1 /DB_XREF=GI:6321785 /SEG=NC_001140:+102606,103964 /DEF=Has Symptoms of class E vps mutant /NOTE=Hse1p; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 12055639]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 12055639]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP,IPI] [pmid 12055639] --- --- --- --- --- --- S0000994 // HSE1 SGDID:S0000994, Chr VIII from 102606-103964, Verified ORF // sgd // 11 // --- /// GENSCAN00000016553 // cdna:Genscan chromosome:SGD1:VIII:102606:103964:1 // ensembl // 11 // --- /// GENEFINDER00000020149 // cdna:GeneFinder chromosome:SGD1:VIII:102606:103964:1 // ensembl // 11 // --- /// YHL002W // cdna:known chromosome:SGD1:VIII:102606:103964:1 gene:YHL002W // ensembl // 11 // --- --- No cerevisiae_gene -1.02319551589841 1.04628729144477 -1.35285090009818 -1.04521512917742 -1.02394435245536 Max fold change below threshold 4 1.35285090009818 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776666_at YER112W.S1 Component of small nuclear ribonucleoprotein complexes involved in RNA processing, splicing, and decay 1.35245455260025 587.517181396484 768.480560302734 LSM4 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction /// 398 // nuclear mRNA splicing, via spliceosome // traceable author statement /// 6364 // rRNA processing // inferred from mutant phenotype /// 6402 // mRNA catabolism // traceable author statement 5688 // snRNP U6 // traceable author statement /// 5730 // nucleolus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 3723 // RNA binding // traceable author statement 790.787292480469 584.705261230469 590.3291015625 746.173828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER112W /GEN=LSM4 /DB_XREF=GI:6320958 /SEG=NC_001137:+387228,387791 /DEF=Like Sm-D3 protein /NOTE=Lsm4p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence IDA] [pmid 10377396]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10377396]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 12438310] --- --- --- --- --- --- S0000914 // LSM4 SGDID:S0000914, Chr V from 387228-387791, Verified ORF // sgd // 11 // --- /// YER112W // cdna:known chromosome:SGD1:V:387228:387791:1 gene:YER112W // ensembl // 11 // --- --- No cerevisiae_gene 1.11373591713472 -1.35245455260025 -1.23887087152097 -1.33957023359917 -1.05978963972453 Max fold change below threshold 4 1.35245455260025 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777418_at YER029C.S1 associated with U1, U2, U4, and U5 snRNPs as part of the Sm-core that is common to all spliceosomal snRNPs; U1 snRNP protein 1.35154605618001 576.341033935547 558.967041015625 SMB1 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 31202 // RNA splicing factor activity, transesterification mechanism // inferred from physical interaction 517.149536132813 638.013916015625 514.668151855469 600.784545898438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER029C /GEN=SMB1 /DB_XREF=GI:6320867 /SEG=NC_001137:-212586,213176 /DEF=associated with U1, U2, U4, and U5 snRNPs as part of the Sm-core that is common to all spliceosomal snRNPs /NOTE=Smb1p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence IDA] [pmid 10377396]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10377396] --- --- --- --- --- --- S0000831 // SMB1 SGDID:S0000831, Chr V from 213176-212586, reverse complement, Verified ORF // sgd // 11 // --- /// YER029C // cdna:known chromosome:SGD1:V:212586:213176:-1 gene:YER029C // ensembl // 11 // --- --- No cerevisiae_gene 1.35154605618001 1.23371263326778 1.13759908263659 -1.00482132859474 1.16172306832379 Max fold change below threshold 4 1.35154605618001 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775564_at YFL068W.S1 Hypothetical protein 1.35151896600909 586.038543701172 623.868255615234 --- --- --- --- 648.276977539063 545.669250488281 626.407836914063 599.459533691406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL068W /DB_XREF=GI:14318451 /SEG=NC_001138:+53,535 /DEF=Hypothetical ORF /NOTE=Yfl068wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001826 // span:136-158 // numtm:1 S0001826 // YFL068W SGDID:S0001826, Chr VI from 53-535, Uncharacterized ORF // sgd // 11 // --- /// YBL113W-A // cdna:known chromosome:SGD1:II:646:1128:1 gene:YBL113W-A // ensembl // 10 // --- /// YDR545C-A // cdna:known chromosome:SGD1:IV:1530846:1531325:-1 gene:YDR545C-A // ensembl // 11 // --- /// YIL177W-A // cdna:known chromosome:SGD1:IX:846:1328:1 gene:YIL177W-A // ensembl // 9 // --- /// YEL077W-A // cdna:known chromosome:SGD1:V:630:1112:1 gene:YEL077W-A // ensembl // 11 // --- /// YER190C-B // cdna:known chromosome:SGD1:V:575675:576157:-1 gene:YER190C-B // ensembl // 11 // --- /// YFL068W // cdna:known chromosome:SGD1:VI:53:535:1 gene:YFL068W // ensembl // 11 // --- /// YGR296C-B // cdna:known chromosome:SGD1:VII:1089752:1090234:-1 gene:YGR296C-B // ensembl // 11 // --- /// YHL050W-A // cdna:known chromosome:SGD1:VIII:811:1293:1 gene:YHL050W-A // ensembl // 11 // --- /// YHR219C-A // cdna:known chromosome:SGD1:VIII:561198:561680:-1 gene:YHR219C-A // ensembl // 11 // --- /// YJL225W-A // cdna:known chromosome:SGD1:X:829:1311:1 gene:YJL225W-A // ensembl // 9 // --- /// YLL067W-A // cdna:known chromosome:SGD1:XII:843:1325:1 gene:YLL067W-A // ensembl // 11 // --- /// YLL066W-A // cdna:known chromosome:SGD1:XII:6486:6968:1 gene:YLL066W-A // ensembl // 11 // --- /// YLR466C-A // cdna:known chromosome:SGD1:XII:1070384:1070866:-1 gene:YLR466C-A // ensembl // 11 // --- /// YLR467C-A // cdna:known chromosome:SGD1:XII:1077047:1077529:-1 gene:YLR467C-A // ensembl // 11 // --- /// YML133W-B // cdna:known chromosome:SGD1:XIII:827:1309:1 gene:YML133W-B // ensembl // 11 // --- /// YNL339W-B // cdna:known chromosome:SGD1:XIV:734:1216:1 gene:YNL339W-B // ensembl // 11 // --- /// YOR396C-A // cdna:known chromosome:SGD1:XV:1090011:1090493:-1 gene:YOR396C-A // ensembl // 11 // --- /// YPL283W-B // cdna:known chromosome:SGD1:XVI:643:1125:1 gene:YPL283W-B // ensembl // 11 // --- /// YPR204C-A // cdna:known chromosome:SGD1:XVI:946852:947334:-1 gene:YPR204C-A // ensembl // 11 // --- S0002153 // sgd // 10 // Negative Strand Matching Probes /// S0002953 // sgd // 11 // Negative Strand Matching Probes /// S0006409 // sgd // 11 // Negative Strand Matching Probes /// S0000992 // sgd // 11 // Negative Strand Matching Probes /// S0003528 // sgd // 11 // Negative Strand Matching Probes /// S0001042 // sgd // 11 // Negative Strand Matching Probes /// S0001262 // sgd // 11 // Negative Strand Matching Probes /// S0001439 // sgd // 9 // Negative Strand Matching Probes /// S0003760 // sgd // 9 // Negative Strand Matching Probes /// S0003989 // sgd // 11 // Negative Strand Matching Probes /// S0003990 // sgd // 11 // Negative Strand Matching Probes /// S0004458 // sgd // 11 // Negative Strand Matching Probes /// S0004459 // sgd // 11 // Negative Strand Matching Probes /// S0004602 // sgd // 11 // Negative Strand Matching Probes /// S0005283 // sgd // 11 // Negative Strand Matching Probes /// S0007526 // sgd // 11 // Negative Strand Matching Probes /// S0006204 // sgd // 11 // Negative Strand Matching Probes /// S0006408 // sgd // 11 // Negative Strand Matching Probes /// AB016599 // gb // 11 // Negative Strand Matching Probes /// GENSCAN00000021051 // ensembl // 10 // Negative Strand Matching Probes /// GENEFINDER00000022386 // ensembl // 10 // Negative Strand Matching Probes /// GENSCAN00000025522 // ensembl // 11 // Negative Strand Matching Probes /// GENEFINDER00000023783 // ensembl // 11 // Negative Strand Matching Probes /// GENSCAN00000016341 // ensembl // 9 // Negative Strand Matching Probes /// GENEFINDER00000019113 // ensembl // 9 // Negative Strand Matching Probes /// GENSCAN00000016744 // ensembl // 11 // Negative Strand Matching Probes /// GENEFINDER00000019735 // ensembl // 11 // Negative Strand Matching Probes /// GENSCAN00000016965 // ensembl // 11 // Negative Strand Matching Probes /// GENEFINDER00000019661 // ensembl // 11 // Negative Strand Matching Probes /// GENEFINDER00000018544 // ensembl // 11 // Negative Strand Matching Probes /// GENSCAN00000019569 // ensembl // 11 // Negative Strand Matching Probes /// GENEFINDER00000021702 // ensembl // 11 // Negative Strand Matching Probes /// GENSCAN00000016510 // ensembl // 11 // Negative Strand Matching Probes /// GENEFINDER00000020212 // ensembl // 11 // Negative Strand Matching Probes /// GENSCAN00000016743 // ensembl // 11 // Negative Strand Matching Probes /// GENEFINDER00000020308 // ensembl // 11 // Negative Strand Matching Probes /// GENSCAN00000023968 // ensembl // 9 // Negative Strand Matching Probes /// GENEFINDER00000024515 // ensembl // 9 // Negative Strand Matching Probes /// GENEFINDER00000024818 // ensembl // 11 // Negative Strand Matching Probes /// GENSCAN00000017634 // ensembl // 11 // Negative Strand Matching Probes /// GENSCAN00000017638 // ensembl // 11 // Negative Strand Matching Probes /// GENEFINDER00000024830 // ensembl // 11 // Negative Strand Matching Probes /// GENSCAN00000018171 // ensembl // 11 // Negative Strand Matching Probes /// GENEFINDER00000024577 // ensembl // 11 // Negative Strand Matching Probes /// GENSCAN00000018172 // ensembl // 11 // Negative Strand Matching Probes /// GENEFINDER00000024799 // ensembl // 11 // Negative Strand Matching Probes /// GENSCAN00000018602 // ensembl // 11 // Negative Strand Matching Probes /// GENEFINDER00000021916 // ensembl // 11 // Negative Strand Matching Probes /// GENSCAN00000019774 // ensembl // 11 // Negative Strand Matching Probes /// GENEFINDER00000020706 // ensembl // 11 // Negative Strand Matching Probes /// GENSCAN00000017839 // ensembl // 11 // Negative Strand Matching Probes /// GENEFINDER00000022814 // ensembl // 11 // Negative Strand Matching Probes /// GENSCAN00000016966 // ensembl // 11 // Negative Strand Matching Probes /// GENEFINDER00000020788 // ensembl // 11 // Negative Strand Matching Probes /// GENSCAN00000017339 // ensembl // 11 // Negative Strand Matching Probes /// GENEFINDER00000021044 // ensembl // 11 // Negative Strand Matching Probes /// YBL113C // ensembl // 10 // Negative Strand Matching Probes /// YDR545W // ensembl // 11 // Negative Strand Matching Probes /// YIL177C // ensembl // 9 // Negative Strand Matching Probes /// YEL077C // ensembl // 11 // Negative Strand Matching Probes /// YER190W // ensembl // 11 // Negative Strand Matching Probes /// YGR296W // ensembl // 11 // Negative Strand Matching Probes /// YHL050C // ensembl // 11 // Negative Strand Matching Probes /// YHR219W // ensembl // 11 // Negative Strand Matching Probes /// YJL225C // ensembl // 9 // Negative Strand Matching Probes /// YLL067C // ensembl // 11 // Negative Strand Matching Probes /// YLL066C // ensembl // 11 // Negative Strand Matching Probes /// YLR466W // ensembl // 11 // Negative Strand Matching Probes /// YLR467W // ensembl // 11 // Negative Strand Matching Probes /// YML133C // ensembl // 11 // Negative Strand Matching Probes /// YNL339C // ensembl // 11 // Negative Strand Matching Probes /// YOR396W // ensembl // 11 // Negative Strand Matching Probes /// YPL283C // ensembl // 11 // Negative Strand Matching Probes /// YPR204W // ensembl // 11 // Negative Strand Matching Probes No cerevisiae_gene 1.27013210160271 -1.18804014878787 1.35151896600909 -1.03491198439141 -1.08143576188879 Max fold change below threshold 4 1.35151896600909 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774576_at YNL201C.S1 Nuclear protein of unknown function; deletion results in sensitivity to anticancer drugs oxaliplatin and cisplatin, but not mitomycin C; deletion is synthetically lethal with a chitin synthase (CHS1) null mutant 1.35141856373864 150.422248840332 215.220413208008 PSY2 --- 5634 // nucleus // inferred from direct assay --- 192.034255981445 142.098281860352 158.746215820313 238.40657043457 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL201C /GEN=PSY2 /DB_XREF=GI:6324128 /SEG=NC_001146:-260626,263202 /DEF=Protein of unknown function; deletion results in sensitivity to anticancer drugs oxaliplatin and cisplatin /NOTE=Psy2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005145 // PSY2 SGDID:S0005145, Chr XIV from 263202-260626, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019879 // cdna:Genscan chromosome:SGD1:XIV:260626:263202:-1 // ensembl // 11 // --- /// YNL201C // cdna:known chromosome:SGD1:XIV:260626:263202:-1 gene:YNL201C // ensembl // 11 // --- --- No cerevisiae_gene -1.00854532154604 -1.35141856373864 1.30741602985167 -1.20969344049632 1.24147938718603 Max fold change below threshold 4 1.35141856373864 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775816_at YPL218W.S1 GTPase, GTP-binding protein of the ARF family, component of COPII coat of vesicles; required for transport vesicle formation during ER to Golgi protein transport 1.3513985141796 2702.33251953125 3117.33740234375 SAR1 6888 // ER to Golgi transport // traceable author statement 30127 // COPII vesicle coat // traceable author statement 3924 // GTPase activity // traceable author statement 3300.0224609375 2962.73364257813 2441.93139648438 2934.65234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL218W /GEN=SAR1 /DB_XREF=GI:6325038 /SEG=NC_001148:+138697,139408 /DEF=Secretion-Associated, Ras-related. Component of COPII coat of vesicles; required for ER to Golgi protein transport /NOTE=Sar1p; go_component: COPII vesicle coat [goid GO:0030127] [evidence TAS] [pmid 11252894]; go_function: GTPase activity [goid GO:0003924] [evidence TAS] [pmid 11252894]; go_process: ER to Golgi transport [goid GO:0006888] [evidence TAS] [pmid 11252894] --- --- --- --- --- --- S0006139 // SAR1 SGDID:S0006139, Chr XVI from 138697-138724,138864-139408, intron sequence removed, Verified ORF // sgd // 11 // --- /// YPL218W // cdna:known chromosome:SGD1:XVI:138697:139408:1 gene:YPL218W // ensembl // 11 // --- GENSCAN00000017020 // ensembl // 8 // Cross Hyb Matching Probes /// GENEFINDER00000020821 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.24906144069304 -1.11384378720791 -1.00938819922646 -1.3513985141796 -1.12450201059272 Max fold change below threshold 4 1.3513985141796 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778165_at YDR296W.S1 Protein involved in homologous recombination in mitochondria and in transcription regulation in nucleus; binds to activation domains of acidic activators; required for recombination-dependent mtDNA partitioning 1.35130977512012 390.157608032227 377.275100708008 MHR1 2 // mitochondrial genome maintenance // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 30528 // transcription regulator activity // traceable author statement 373.510467529297 276.40625 503.908966064453 381.039733886719 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR296W /GEN=MHR1 /DB_XREF=GI:6320502 /SEG=NC_001136:+1055204,1055884 /DEF=Involved in mitochondrial homologous DNA recombination. Binds to activation domains of acidic activators. Presence in RNA pol II holoenzyme may help recruit an Ssn3-active form of the holoenzyme to target promoters. /NOTE=Mhr1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 12034822]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12034822]; go_function: transcription regulator activity [goid GO:0030528] [evidence TAS] [pmid 12034822]; go_process: mitochondrial genome maintenance [goid GO:0000002] [evidence IDA] [pmid 12034822] --- --- --- --- --- --- S0002704 // MHR1 SGDID:S0002704, Chr IV from 1055206-1055886, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023410 // cdna:GeneFinder chromosome:SGD1:IV:1055206:1055886:1 // ensembl // 10 // --- /// GENSCAN00000025327 // cdna:Genscan chromosome:SGD1:IV:1055206:1055886:1 // ensembl // 10 // --- /// YDR296W // cdna:known chromosome:SGD1:IV:1055206:1055886:1 gene:YDR296W // ensembl // 10 // --- --- No cerevisiae_gene 1.06271133443379 -1.35130977512012 1.30499189039537 1.34911604860158 1.02015811339164 Max fold change below threshold 4 1.35130977512012 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775917_at YNL239W.S1 Aminopeptidase of cysteine protease family, has a DNA binding activity and acts as bleomycin hydrolase in vitro; transcription is regulated by galactose via Gal4p 1.35082214309687 2352.88952636719 1879.23992919922 LAP3 46677 // response to antibiotic // inferred from direct assay 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 3676 // nucleic acid binding // traceable author statement /// 8234 // cysteine-type peptidase activity // inferred from direct assay /// 30528 // transcription regulator activity // inferred from direct assay 1900.90966796875 2265.37744140625 2440.40161132813 1857.57019042969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL239W /GEN=LAP3 /DB_XREF=GI:27808714 /SEG=NC_001146:+200568,201932 /DEF=AKA bleomycin hydrolase. This protein may represent the first example of a eukaryotic DNA-binding protease. /NOTE=Lap3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14576278]; go_function: cysteine-type peptidase activity [goid GO:0008234] [evidence IDA] [pmid 8063738]; go_function: nucleic acid binding [goid GO:0003676] [evidence TAS] [pmid 9374524]; go_function: transcription regulator activity [goid GO:0030528] [evidence IDA] [pmid 9374524]; go_process: response to antibiotic [goid GO:0046677] [evidence IDA] [pmid 8063738] --- --- --- --- --- --- S0005183 // LAP3 SGDID:S0005183, Chr XIV from 200568-201932, Verified ORF // sgd // 11 // --- /// GENSCAN00000019849 // cdna:Genscan chromosome:SGD1:XIV:200481:201932:1 // ensembl // 11 // --- /// GENEFINDER00000020439 // cdna:GeneFinder chromosome:SGD1:XIV:200568:201932:1 // ensembl // 11 // --- /// YNL239W // cdna:known chromosome:SGD1:XIV:200568:201932:1 gene:YNL239W // ensembl // 11 // --- --- No cerevisiae_gene -1.35082214309687 1.19173334723841 -1.13903032871523 1.28380724894511 -1.02333127316661 Max fold change below threshold 4 1.35082214309687 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776987_at YBR080C.S1 ATPase required for the release of Sec17p during the 'priming' step in homotypic vacuole fusion and for ER to Golgi transport; homolog of the mammalian NSF 1.35064004156882 841.280822753906 1121.95324707031 SEC18 11 // vacuole inheritance // inferred from direct assay /// 6888 // ER to Golgi transport // traceable author statement /// 42145 // homotypic vacuole fusion, non-autophagic // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 19897 // extrinsic to plasma membrane // inferred from direct assay 16887 // ATPase activity // inferred from direct assay 1072.32006835938 794.201416015625 888.360229492188 1171.58642578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR080C /GEN=SEC18 /DB_XREF=GI:6319554 /SEG=NC_001134:-398571,400847 /DEF=cytoplasmic protein involved in protein transport between ER and Golgi; ATPase /NOTE=Sec18p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9624182]; go_component: extrinsic to plasma membrane [goid GO:0019897] [evidence IDA] [pmid 9624182]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 10387016]; go_process: ER to Golgi transport [goid GO:0006888] [evidence TAS] [pmid 2082939]; go_process: vacuole inheritance [goid GO:0000011] [evidence IDA] [pmid 9015301] --- --- --- --- --- --- S0000284 // SEC18 SGDID:S0000284, Chr II from 400884-398608, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021203 // cdna:Genscan chromosome:SGD1:II:398608:400884:-1 // ensembl // 11 // --- /// GENEFINDER00000022399 // cdna:GeneFinder chromosome:SGD1:II:398608:400884:-1 // ensembl // 11 // --- /// YBR080C // cdna:known chromosome:SGD1:II:398608:400884:-1 gene:YBR080C // ensembl // 11 // --- --- No cerevisiae_gene -1.35064004156882 -1.35018654806614 1.08940028773585 -1.20707797665857 1.09257157480392 Max fold change below threshold 4 1.35064004156882 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772060_at YFL017W-A.S1 snRNP G protein (the homologue of the human Sm-G) 1.35038323068739 993.242828369141 872.18798828125 SMX2 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 31202 // RNA splicing factor activity, transesterification mechanism // inferred from physical interaction 864.138916015625 1133.88952636719 852.596130371094 880.237060546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL017W-A /GEN=SMX2 /DB_XREF=GI:14318502 /SEG=NC_001138:+103693,103926 /DEF=snRNP G protein (the homologue of the human Sm-G) /NOTE=Smx2p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence IDA] [pmid 10377396]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10377396] --- --- --- --- --- --- S0002965 // SMX2 SGDID:S0002965, Chr VI from 103693-103926, Verified ORF // sgd // 11 // --- /// YFL017W-A // cdna:known chromosome:SGD1:VI:103693:103926:1 gene:YFL017W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.35038323068739 1.31216116454439 -1.24224298527494 -1.01353839788073 1.01862911649145 Max fold change below threshold 4 1.35038323068739 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778268_at YML074C.S1 Nucleolar peptidyl-prolyl cis-trans isomerase (PPIase); FK506 binding protein; phosphorylated by casein kinase II (Cka1p-Cka2p-Ckb1p-Ckb2p) and dephosphorylated by Ptp1p 1.35028578716231 2479.95727539063 2854.87719726563 FPR3 --- 5730 // nucleolus // inferred from direct assay 3755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay 2972.60668945313 2625.61157226563 2334.30297851563 2737.14770507813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML074C /GEN=FPR3 /DB_XREF=GI:6323566 /SEG=NC_001145:-120089,121324 /DEF=Nucleolar peptidyl-prolyl cis-trans isomerase (PPIase); FK506 binding protein; phosphorylated by casein kinase II (Cka1p-Cka2p-Ckb1p-Ckb2p) and dephosphorylated by Ptp1p /NOTE=Fpr3p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 7525596]; go_function: peptidyl-prolyl cis-trans isomerase activity [goid GO:0003755] [evidence IDA] [pmid 7925954]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004539 // FPR3 SGDID:S0004539, Chr XIII from 121324-120089, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018655 // cdna:Genscan chromosome:SGD1:XIII:120089:120340:-1 // ensembl // 10 // --- /// GENEFINDER00000022060 // cdna:GeneFinder chromosome:SGD1:XIII:120089:121324:-1 // ensembl // 11 // --- /// YML074C // cdna:known chromosome:SGD1:XIII:120089:121324:-1 gene:YML074C // ensembl // 11 // --- --- No cerevisiae_gene -1.24375044818053 -1.13215782595294 -1.35028578716231 -1.27344509980594 -1.08602348493586 Max fold change below threshold 4 1.35028578716231 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774022_at YOL158C.S1 Endosomal ferric enterobactin transporter, expressed under conditions of iron deprivation; member of the major facilitator superfamily; expression is regulated by Rcs1p and affected by chloroquine treatment 1.35025736649972 44.4001617431641 54.2396202087402 ENB1 15685 // ferric-enterobactin transport // inferred from mutant phenotype 5768 // endosome // traceable author statement /// 16021 // integral to membrane // inferred from sequence similarity /// 16023 // cytoplasmic membrane-bound vesicle // traceable author statement 15620 // ferric-enterobactin transporter activity // inferred from mutant phenotype 56.2021141052246 42.4150657653809 46.3852577209473 52.2771263122559 0.0676269978284836 0.0375977009534836 0.014160200022161 0.018554700538516 A P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL158C /GEN=ENB1 /DB_XREF=GI:6324415 /SEG=NC_001147:-19490,21310 /DEF=Endosomal ferric enterobactin transporter, expressed under conditions of iron deprivation; member of the major facilitator superfamily; expression is regulated by Rcs1p and affected by chloroquine treatment /NOTE=Enb1p; go_component: cytoplasmic vesicle [goid GO:0016023] [evidence TAS] [pmid 12196168]; go_component: endosome [goid GO:0005768] [evidence TAS] [pmid 12196168]; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 9678606]; go_function: ferric-enterobactin transporter activity [goid GO:0015620] [evidence IMP] [pmid 10831226]; go_process: ferric-enterobactin transport [goid GO:0015685] [evidence IMP] [pmid 10831226] --- --- --- --- --- S0005518 // span:131-153,187-209,222-244,281-303,310-329,357-379,391-410,415-434,441-463,478-500,552-574 // numtm:11 S0005518 // ENB1 SGDID:S0005518, Chr XV from 21310-19490, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017343 // cdna:Genscan chromosome:SGD1:XV:19490:21310:-1 // ensembl // 11 // --- /// GENEFINDER00000022920 // cdna:GeneFinder chromosome:SGD1:XV:19490:21310:-1 // ensembl // 11 // --- /// YOL158C // cdna:known chromosome:SGD1:XV:19490:21310:-1 gene:YOL158C // ensembl // 11 // --- --- No cerevisiae_gene -1.35025736649972 -1.32505073588962 1.04689532314666 -1.21163742246158 -1.07508040456402 Max fold change below threshold 4 1.35025736649972 Max fold change below threshold APPPPP No 4 0 APPP 1 3 0 No No 2 < x = 3
1769677_at YDR195W.S1 RNA-binding protein involved in the cleavage step of mRNA 3'-end formation prior to polyadenylation; also involved in snoRNA maturation 1.35023489605514 903.255096435547 1181.41705322266 REF2 6397 // mRNA processing // inferred from genetic interaction /// 6397 // mRNA processing // inferred from mutant phenotype /// 6397 // mRNA processing // inferred from physical interaction /// 30846 // transcription termination from Pol II promoter, RNA polymerase(A) coupled // inferred from physical interaction /// 30847 // transcription termination from Pol II promoter, RNA polymerase(A)-independent // inferred from mutant phenotype /// 30847 // transcription termination from Pol II promoter, RNA polymerase(A)-independent // inferred from physical interaction /// 31126 // snoRNA 3'-end processing // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from physical interaction 3723 // RNA binding // inferred from direct assay 1160.69616699219 946.884826660156 859.625366210938 1202.13793945313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR195W /GEN=REF2 /DB_XREF=GI:6320401 /SEG=NC_001136:+848592,850193 /DEF=RNA End FormationRNA-binding protein involved in cleavage step of mRNA 3'-end formation, prior to polyadenylation /NOTE=Ref2p; go_component: mRNA cleavage and polyadenylation specificity factor complex [goid GO:0005847] [evidence IPI] [pmid 12819204]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: cleavage/polyadenylation specificity factor activity [goid GO:0030364] [evidence IMP,IPI] [pmid 7862160]; go_process: mRNA processing [goid GO:0006397] [evidence IGI,IMP,IPI] [pmid 7862160]; go_process: transcription termination from Pol II promoter, poly(A) coupled [goid GO:0030846] [evidence IPI] [pmid 12819204]; go_process: transcription termination from Pol II promoter, poly(A)-independent [goid GO:0030847] [evidence IMP] [pmid 12773397]; go_process: transcription termination from Pol II promoter, poly(A)-independent [goid GO:0030847] [evidence IPI] [pmid 12819204] --- --- --- --- --- --- S0002603 // REF2 SGDID:S0002603, Chr IV from 848594-850195, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023917 // cdna:GeneFinder chromosome:SGD1:IV:848594:850195:1 // ensembl // 11 // --- /// GENSCAN00000025246 // cdna:Genscan chromosome:SGD1:IV:848594:850195:1 // ensembl // 11 // --- /// YDR195W // cdna:known chromosome:SGD1:IV:848594:850195:1 gene:YDR195W // ensembl // 11 // --- --- No cerevisiae_gene -1.12868957823573 -1.22580501272386 1.06382583105527 -1.35023489605514 1.03570423823172 Max fold change below threshold 4 1.35023489605514 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775006_at YHR092C.S1 High-affinity glucose transporter of the major facilitator superfamily, expression is induced by low levels of glucose and repressed by high levels of glucose 1.35015761061319 4242.85876464844 3877.68518066406 HXT4 8645 // hexose transport // traceable author statement 5886 // plasma membrane // inferred from sequence similarity 5353 // fructose transporter activity // traceable author statement /// 5355 // glucose transporter activity // traceable author statement /// 5355 // glucose transporter activity // inferred from direct assay /// 15578 // mannose transporter activity // traceable author statement 4455.43408203125 5155.310546875 3330.40698242188 3299.93627929688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR092C /GEN=HXT4 /DB_XREF=GI:6321884 /SEG=NC_001140:-287131,288813 /DEF=High-affinity glucose transporter of the major facilitator superfamily, expression is induced by low levels of glucose and repressed by high levels of glucose /NOTE=Hxt4p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 8929273]; go_function: fructose transporter activity [goid GO:0005353] [evidence TAS] [pmid 10618490]; go_function: glucose transporter activity [goid GO:0005355] [evidence TAS] [pmid 10618490]; go_function: glucose transporter activity [goid GO:0005355] [evidence IDA] [pmid 12702270]; go_function: mannose transporter activity [goid GO:0015578] [evidence TAS] [pmid 10618490]; go_process: hexose transport [goid GO:0008645] [evidence TAS] [pmid 10618490] --- --- --- --- --- S0001134 // span:65-87,123-140,150-169,176-198,208-230,243-262,365-387,396-415,435-457,470-492,496-518 // numtm:11 S0001134 // HXT4 SGDID:S0001134, Chr VIII from 288813-287131, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016633 // cdna:Genscan chromosome:SGD1:VIII:287131:288813:-1 // ensembl // 11 // --- /// GENEFINDER00000020173 // cdna:GeneFinder chromosome:SGD1:VIII:287131:288813:-1 // ensembl // 11 // --- /// YHR092C // cdna:known chromosome:SGD1:VIII:287131:288813:-1 gene:YHR092C // ensembl // 11 // --- --- No cerevisiae_gene -1.11592499782923 1.15708378846101 -1.30817195925751 -1.33780469040191 -1.35015761061319 Max fold change below threshold 4 1.35015761061319 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774928_at YIL142W.S1 Subunit beta of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo 1.3498475311937 1732.31048583984 1569.31994628906 CCT2 6457 // protein folding // traceable author statement /// 7010 // cytoskeleton organization and biogenesis // traceable author statement 5737 // cytoplasm // traceable author statement /// 5737 // cytoplasm // inferred from direct assay /// 5832 // chaperonin-containing T-complex // traceable author statement /// 5832 // chaperonin-containing T-complex // inferred from physical interaction /// 5856 // cytoskeleton // traceable author statement 51082 // unfolded protein binding // traceable author statement 1512.06005859375 1423.57043457031 2041.05053710938 1626.57983398438 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL142W /GEN=CCT2 /DB_XREF=GI:6322049 /SEG=NC_001141:+83302,84885 /DEF=Subunit beta of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo /NOTE=Cct2p; go_component: chaperonin-containing T-complex [goid GO:0005832] [evidence TAS] [pmid 8771707]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 8771707]; go_component: cytoskeleton [goid GO:0005856] [evidence TAS] [pmid 8771707]; go_function: chaperone activity [goid GO:0003754] [evidence TAS] [pmid 8771707]; go_process: cytoskeleton organization and biogenesis [goid GO:0007010] [evidence TAS] [pmid 8771707]; go_process: protein folding [goid GO:0006457] [evidence TAS] [pmid 8771707] --- --- --- --- scop // a.139.1.Type I dockerin domain // All alpha proteins; Type I dockerin domain; Type I dockerin domain; Type I dockerin domain // 2.40000009536743 /// scop // a.139.1.Type I dockerin domain // All alpha proteins; Type I dockerin domain; Type I dockerin domain; Type I dockerin domain // 0.540000021457672 --- S0001404 // CCT2 SGDID:S0001404, Chr IX from 83302-84885, Verified ORF // sgd // 11 // --- /// GENSCAN00000016368 // cdna:Genscan chromosome:SGD1:IX:83302:84885:1 // ensembl // 11 // --- /// GENEFINDER00000019035 // cdna:GeneFinder chromosome:SGD1:IX:83302:84885:1 // ensembl // 11 // --- /// YIL142W // cdna:known chromosome:SGD1:IX:83302:84885:1 gene:YIL142W // ensembl // 11 // --- --- No cerevisiae_gene 1.00954992719667 -1.06216034126204 -1.12486660889223 1.3498475311937 1.07573758379487 Max fold change below threshold 4 1.3498475311937 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775956_at YGL140C.S1 Hypothetical protein 1.34974563688021 462.53401184082 504.809707641602 --- --- --- --- 490.525360107422 462.5068359375 462.561187744141 519.094055175781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL140C /GEN=HUL5 /DB_XREF=GI:6321298 /SEG=NC_001139:-241356,245015 /DEF=Hypothetical ORF /NOTE=Ygl140cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 1.29999995231628 S0003108 // span:36-58,73-95,125-144,148-167,180-199,632-649,662-684,688-705,712-731,736-755,768-785 // numtm:11 S0003108 // YGL140C SGDID:S0003108, Chr VII from 245017-241358, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019244 // cdna:Genscan chromosome:SGD1:VII:241358:244519:-1 // ensembl // 11 // --- /// GENEFINDER00000021433 // cdna:GeneFinder chromosome:SGD1:VII:241358:244849:-1 // ensembl // 11 // --- /// YGL140C // cdna:known chromosome:SGD1:VII:241358:245017:-1 gene:YGL140C // ensembl // 11 // --- --- No cerevisiae_gene -1.34974563688021 -1.06057969740734 1.01393756880487 -1.06045507730482 1.05824101543313 Max fold change below threshold 4 1.34974563688021 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772694_at YKR067W.S1 Glycerol-3-phosphate acyltransferase located in both lipid particles and the ER; involved in the stepwise acylation of glycerol-3-phosphate and dihydroxyacetone, which are intermediate steps in lipid biosynthesis 1.34973677404462 2751.82763671875 3209.26538085938 GPT2 8654 // phospholipid biosynthesis // inferred from genetic interaction /// 8654 // phospholipid biosynthesis // inferred from direct assay /// 8654 // phospholipid biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay 4366 // glycerol-3-phosphate O-acyltransferase activity // inferred from genetic interaction /// 4366 // glycerol-3-phosphate O-acyltransferase activity // inferred from direct assay /// 4366 // glycerol-3-phosphate O-acyltransferase activity // inferred from mutant phenotype 3237.53247070313 2982.28271484375 2521.37255859375 3180.99829101563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR067W /GEN=GPT2 /DB_XREF=GI:6322920 /SEG=NC_001143:+567560,569791 /DEF=Glycerol-3-phosphate acyltransferase located in both lipid particles and the ER; involved in the stepwise acylation of glycerol-3-phosphate and dihydroxyacetone, which are intermediate steps in lipid biosynthesis /NOTE=Gpt2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: glycerol-3-phosphate O-acyltransferase activity [goid GO:0004366] [evidence IDA,IGI,IMP] [pmid 11544256]; go_process: phospholipid biosynthesis [goid GO:0008654] [evidence IDA,IGI,IMP] [pmid 11544256] --- --- --- --- --- S0001775 // span:32-54,453-475,502-524,539-558 // numtm:4 S0001775 // GPT2 SGDID:S0001775, Chr XI from 567560-569791, Verified ORF // sgd // 11 // --- /// GENSCAN00000018473 // cdna:Genscan chromosome:SGD1:XI:567560:569791:1 // ensembl // 11 // --- /// GENEFINDER00000022980 // cdna:GeneFinder chromosome:SGD1:XI:567560:569791:1 // ensembl // 11 // --- /// YKR067W // cdna:known chromosome:SGD1:XI:567560:569791:1 gene:YKR067W // ensembl // 11 // --- --- No cerevisiae_gene -1.34973677404462 -1.08558871853058 -1.14475722969941 -1.28403573667384 -1.01777246465274 Max fold change below threshold 4 1.34973677404462 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774617_at YKL077W.S1 Hypothetical protein 1.34966092970505 2359.0908203125 2572.2451171875 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 2613.0615234375 1936.08740234375 2782.09423828125 2531.4287109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL077W /GEN=DHR2 /DB_XREF=GI:6322773 /SEG=NC_001143:+291098,292276 /DEF=Hypothetical ORF /NOTE=Ykl077wp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001560 // span:316-338 // numtm:1 S0001560 // YKL077W SGDID:S0001560, Chr XI from 291098-292276, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022998 // cdna:GeneFinder chromosome:SGD1:XI:291098:292276:1 // ensembl // 11 // --- /// GENSCAN00000018359 // cdna:Genscan chromosome:SGD1:XI:291194:292276:1 // ensembl // 11 // --- /// YKL077W // cdna:known chromosome:SGD1:XI:291098:292276:1 gene:YKL077W // ensembl // 11 // --- --- No cerevisiae_gene -1.07918652500548 -1.34966092970505 1.14941063803945 1.06468761386888 -1.03224772325102 Max fold change below threshold 4 1.34966092970505 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774667_at YGL049C.S1 Translation initiation factor eIF4G, subunit of the mRNA cap-binding protein complex (eIF4F) that also contains eIF4E (Cdc33p); associates with the poly(A)-binding protein Pab1p, also interacts with eIF4A (Tif1p); homologous to Tif4631p 1.34952022431341 462.786392211914 600.679748535156 TIF4632 6413 // translational initiation // traceable author statement 5840 // ribosome // traceable author statement /// 16281 // eukaryotic translation initiation factor 4F complex // inferred from genetic interaction /// 16281 // eukaryotic translation initiation factor 4F complex // inferred from sequence similarity 3743 // translation initiation factor activity // traceable author statement 563.125244140625 508.294677734375 417.278106689453 638.234252929688 0.000244141003349796 0.000732421991415322 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL049C /GEN=TIF4632 /DB_XREF=GI:6321389 /SEG=NC_001139:-406861,409605 /DEF=also called eIF4 (eIF-4) gamma /NOTE=Tif4632p; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 9841679]; go_function: translation initiation factor activity [goid GO:0003743] [evidence TAS] [pmid 9841679]; go_process: translational initiation [goid GO:0006413] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0003017 // TIF4632 SGDID:S0003017, Chr VII from 409607-406863, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019307 // cdna:Genscan chromosome:SGD1:VII:406863:409607:-1 // ensembl // 11 // --- /// GENEFINDER00000021585 // cdna:GeneFinder chromosome:SGD1:VII:406863:409607:-1 // ensembl // 11 // --- /// YGL049C // cdna:known chromosome:SGD1:VII:406863:409607:-1 gene:YGL049C // ensembl // 11 // --- --- No cerevisiae_gene -1.0649578235451 -1.10787161229121 1.16254534347888 -1.34952022431341 1.13337887010142 Max fold change below threshold 4 1.34952022431341 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777609_at YFR046C.S1 Kinetochore protein of unknown function; associated with the essential kinetochore proteins Nnf11p and Spc24p; phosphorylated by both Clb5-Cdk1 and, to a lesser extent, Clb2-Cdk1. 1.34928049036834 194.870338439941 241.409683227539 CNN1 7059 // chromosome segregation // inferred from physical interaction 776 // kinetochore // inferred from direct assay /// 5634 // nucleus // inferred from direct assay --- 216.94775390625 160.787734985352 228.952941894531 265.871612548828 0.000732421991415322 0.014160200022161 0.00585938012227416 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR046C /GEN=ERJ5 /DB_XREF=GI:14318571 /SEG=NC_001138:-243061,244146 /DEF=Kinetochore protein that co-purifies with Nnf1p /NOTE=Yfr046cp --- --- --- --- --- --- S0001942 // CNN1 SGDID:S0001942, Chr VI from 244146-243061, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000023282 // cdna:Genscan chromosome:SGD1:VI:243061:244146:-1 // ensembl // 11 // --- /// YFR046C // cdna:known chromosome:SGD1:VI:243061:244146:-1 gene:YFR046C // ensembl // 11 // --- GENEFINDER00000018509 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 1.13129038574506 -1.34928049036834 1.10762350920193 1.0553367701307 1.22550986475628 Max fold change below threshold 4 1.34928049036834 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1770856_at YDR090C.S1 Hypothetical protein 1.34923088376335 617.574554443359 608.171325683594 --- --- 16021 // integral to membrane // inferred from sequence similarity --- 660.939697265625 501.668640136719 733.48046875 555.402954101563 0.000732421991415322 0.00585938012227416 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR090C /GEN=SLU7 /DB_XREF=GI:6320295 /SEG=NC_001136:-625060,625992 /DEF=Hypothetical ORF /NOTE=Ydr090cp; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 12524434]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002497 // span:7-29,44-66,97-119,129-151,163-185,189-211 // numtm:6 S0002497 // YDR090C SGDID:S0002497, Chr IV from 625993-625061, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023543 // cdna:GeneFinder chromosome:SGD1:IV:625061:625720:-1 // ensembl // 11 // --- /// GENSCAN00000025163 // cdna:Genscan chromosome:SGD1:IV:625061:625720:-1 // ensembl // 11 // --- /// YDR090C // cdna:known chromosome:SGD1:IV:625061:625993:-1 gene:YDR090C // ensembl // 11 // --- --- No cerevisiae_gene -1.34923088376335 -1.31748258588677 -1.25797847963407 1.1097539938734 -1.19001833242818 Max fold change below threshold 4 1.34923088376335 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1775207_at YDL197C.S1 Anti-silencing protein that causes derepression of silent loci when overexpressed 1.34918270900609 384.755737304688 550.314025878906 ASF2 30466 // chromatin silencing at silent mating-type cassette // inferred from genetic interaction 784 // nuclear chromosome, telomeric region // inferred from direct assay /// 5634 // nucleus // inferred from direct assay --- 514.12890625 382.662475585938 386.848999023438 586.499145507813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL197C /GEN=ASF2 /DB_XREF=GI:6320004 /SEG=NC_001136:-104918,106495 /DEF=anti-silencing protein that causes depression of silent loci when overexpressed /NOTE=Asf2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin silencing at silent mating-type cassette (sensu Fungi) [goid GO:0030466] [evidence IGI] [pmid 9290207] --- --- --- --- --- --- S0002356 // ASF2 SGDID:S0002356, Chr IV from 106495-104918, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023937 // cdna:GeneFinder chromosome:SGD1:IV:104918:106495:-1 // ensembl // 11 // --- /// GENSCAN00000024956 // cdna:Genscan chromosome:SGD1:IV:104918:106495:-1 // ensembl // 11 // --- /// YDL197C // cdna:known chromosome:SGD1:IV:104918:106495:-1 gene:YDL197C // ensembl // 11 // --- --- No cerevisiae_gene -1.34918270900609 -1.34355715297864 -1.19944523709849 -1.32901702614681 1.14076282888989 Max fold change below threshold 4 1.34918270900609 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769778_at YJR067C.S1 Essential protein of unknown function 1.34909980926463 132.925628662109 114.152572631836 YAE1 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 101.575729370117 137.035797119141 128.815460205078 126.729415893555 0.000732421991415322 0.00415039015933871 0.00805663969367743 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR067C /GEN=YAE1 /DB_XREF=GI:6322527 /SEG=NC_001142:-566933,567358 /DEF=Essential protein of unknown function /NOTE=Yae1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003828 // YAE1 SGDID:S0003828, Chr X from 567358-566933, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024417 // cdna:GeneFinder chromosome:SGD1:X:566933:567358:-1 // ensembl // 11 // --- /// YJR067C // cdna:known chromosome:SGD1:X:566933:567358:-1 gene:YJR067C // ensembl // 11 // --- --- No cerevisiae_gene -1.34879073945581 1.34909980926463 -1.057324089094 1.26817164891532 1.24763481079012 Max fold change below threshold 4 1.34909980926463 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1769901_at YCR094W.S1 Endosomal protein that regulates cell polarity; similar to Ynr048wp and Lem3p 1.34876555140555 374.170745849609 402.317123413086 CDC50 80 // G1 phase of mitotic cell cycle // inferred from direct assay /// 80 // G1 phase of mitotic cell cycle // inferred from mutant phenotype /// 80 // G1 phase of mitotic cell cycle // inferred from genetic interaction /// 30467 // establishment and/or maintenance of cell polarity (sensu Fungi) // inferred from mutant phenotype /// 45449 // regulation of transcription // inferred from genetic interaction /// 45449 // regulation of transcription // inferred from mutant phenotype 299 // integral to membrane of membrane fraction // inferred from direct assay /// 5770 // late endosome // inferred from direct assay 30528 // transcription regulator activity // inferred from genetic interaction 356.054473876953 345.488159179688 402.853332519531 448.579772949219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR094W /GEN=CDC50 /DB_XREF=GI:6319937 /SEG=NC_001135:+286758,287933 /DEF=Endosomal protein that regulates cell polarity; similar to Ynr048wp and Lem3p /NOTE=Cdc50p; go_component: integral to membrane of membrane fraction [goid GO:0000299] [evidence IDA] [pmid 12589066]; go_component: late endosome [goid GO:0005770] [evidence IDA] [pmid 12589066]; go_function: transcription regulator activity [goid GO:0030528] [evidence IGI] [pmid 11180453]; go_process: G1 phase of mitotic cell cycle [goid GO:0000080] [evidence IDA,IGI,IMP] [pmid 11180453]; go_process: establishment and/or maintenance of cell polarity (sensu Saccharomyces) [goid GO:0030012] [evidence IMP] [pmid 12589066]; go_process: regulation of transcription [goid GO:0045449] [evidence IGI,IMP] [pmid 11180453] --- --- --- --- --- S0000690 // span:45-67,330-352 // numtm:2 S0000690 // CDC50 SGDID:S0000690, Chr III from 286758-287933, Verified ORF // sgd // 11 // --- /// GENSCAN00000022525 // cdna:Genscan chromosome:SGD1:III:287346:287933:1 // ensembl // 11 // --- /// YCR094W // cdna:known chromosome:SGD1:III:286758:287933:1 gene:YCR094W // ensembl // 11 // --- --- No cerevisiae_gene -1.13078159102128 -1.03058372455471 1.34876555140555 1.13143735601185 1.25986276219139 Max fold change below threshold 4 1.34876555140555 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771415_at YDR061W.S1 Mitochondrial protein, member of the ATP-binding cassette (ABC) transporter family; transcriptionally activated by Yrm1p along with genes involved in multidrug resistance 1.34870121817123 771.483978271484 1073.34268188477 --- --- 5739 // mitochondrion // inferred from direct assay 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from sequence similarity 1004.28265380859 744.629455566406 798.338500976563 1142.40270996094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR061W /GEN=MAK21 /DB_XREF=GI:6320266 /SEG=NC_001136:+574159,575778 /DEF=Mitochondrial protein, member of the ATP-binding cassette (ABC) transporter family; transcriptionally activated by Yrm1p along with genes involved in multidrug resistance /NOTE=Ydr061wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence ISS] [pmid 10581358]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002468 // YDR061W SGDID:S0002468, Chr IV from 574160-575779, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025144 // cdna:Genscan chromosome:SGD1:IV:574160:575779:1 // ensembl // 11 // --- /// YDR061W // cdna:known chromosome:SGD1:IV:574160:575779:1 gene:YDR061W // ensembl // 11 // --- --- No cerevisiae_gene 1.01831803457446 -1.34870121817123 -1.07299591321433 -1.25796595376537 1.13753105824196 Max fold change below threshold 4 1.34870121817123 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770162_x_at YBR301W.S1 Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme /// Hypothetical protein /// Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth /// Hypothetical protein /// Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 1.34830989047167 164.652717590332 221.583213806152 PAU4 /// PAU6 /// PAU1 /// PAU2 /// DAN3 --- 9277 // cell wall (sensu Fungi) // inferred from sequence similarity --- 215.220962524414 159.622772216797 169.682662963867 227.945465087891 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR301W /GEN=DAN3 /DB_XREF=GI:6319777 /SEG=NC_001134:+809013,809375 /DEF=delayed anaerobic gene /NOTE=Dan3p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence ISS] [pmid 11292809]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000505 // DAN3 SGDID:S0000505, Chr II from 809051-809413, Verified ORF // sgd // 11 // --- /// GENSCAN00000021379 // cdna:Genscan chromosome:SGD1:II:809051:809413:1 // ensembl // 11 // --- /// GENEFINDER00000022178 // cdna:GeneFinder chromosome:SGD1:II:809051:809413:1 // ensembl // 11 // --- /// YBR301W // cdna:known chromosome:SGD1:II:809051:809413:1 gene:YBR301W // ensembl // 11 // --- S0003526 // sgd // 1 // Cross Hyb Matching Probes /// GENSCAN00000019567 // ensembl // 1 // Cross Hyb Matching Probes /// GENEFINDER00000021587 // ensembl // 1 // Cross Hyb Matching Probes /// YGR294W // ensembl // 1 // Cross Hyb Matching Probes No cerevisiae_gene 1.07377090266443 -1.34830989047167 1.22081096109593 -1.26837331973181 1.05912297024521 Max fold change below threshold 4 1.34830989047167 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774861_at YPL010W.S1 Zeta subunit of the coatomer complex (COPI), which coats Golgi-derived transport vesicles; involved in retrograde transport between Golgi and ER 1.34829653122733 986.150390625 1269.56176757813 RET3 6890 // retrograde transport, Golgi to ER // inferred from mutant phenotype 30126 // COPI vesicle coat // inferred from sequence similarity /// 30126 // COPI vesicle coat // inferred from mutant phenotype 5515 // protein binding // inferred from mutant phenotype 1241.42016601563 920.732299804688 1051.56848144531 1297.70336914063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL010W /GEN=RET3 /DB_XREF=GI:6325247 /SEG=NC_001148:+535013,535582 /DEF=vesicle coat component /NOTE=Ret3p; go_component: COPI vesicle coat [goid GO:0030126] [evidence IMP,ISS] [pmid 8617224]; go_function: protein binding [goid GO:0005515] [evidence IMP] [pmid 9811561]; go_process: retrograde transport, Golgi to ER [goid GO:0006890] [evidence IMP] [pmid 8617224] --- --- --- --- --- --- S0005931 // RET3 SGDID:S0005931, Chr XVI from 535015-535584, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020882 // cdna:GeneFinder chromosome:SGD1:XVI:535015:535584:1 // ensembl // 11 // --- /// YPL010W // cdna:known chromosome:SGD1:XVI:535015:535584:1 gene:YPL010W // ensembl // 11 // --- --- No cerevisiae_gene -1.12133259075579 -1.34829653122733 1.14517802565539 -1.18054143683479 1.04533775482772 Max fold change below threshold 4 1.34829653122733 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774998_at YDR438W.S1 Hypothetical protein 1.34794648023653 335.248245239258 318.823028564453 --- --- 16021 // integral to membrane // inferred from sequence similarity --- 309.347320556641 277.635009765625 392.861480712891 328.298736572266 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR438W /GEN=PPZ2 /DB_XREF=GI:6320646 /SEG=NC_001136:+1338262,1339374 /DEF=Hypothetical ORF /NOTE=Ydr438wp; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 12524434]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002846 // span:12-34,44-66,122-144,148-170,175-192,202-221,241-263,273-290,297-319,329-348 // numtm:10 S0002846 // YDR438W SGDID:S0002846, Chr IV from 1338264-1339376, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025444 // cdna:Genscan chromosome:SGD1:IV:1338264:1339376:1 // ensembl // 11 // --- /// YDR438W // cdna:known chromosome:SGD1:IV:1338264:1339376:1 gene:YDR438W // ensembl // 11 // --- GENEFINDER00000023859 // ensembl // 2 // Cross Hyb Matching Probes No cerevisiae_gene -1.02770528773781 -1.11422302546709 -1.34794648023653 1.26996891392489 1.06126258336915 Max fold change below threshold 4 1.34794648023653 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778911_at YDL134C.S1 Catalytic subunit of protein phosphatase 2A, functionally redundant with Pph22p; methylated at C terminus; forms alternate complexes with several regulatory subunits; involved in signal transduction and regulation of mitosis 1.34784468948378 1517.54913330078 1515.11383056641 PPH21 82 // G1/S transition of mitotic cell cycle // inferred from genetic interaction /// 6412 // protein biosynthesis // inferred from physical interaction /// 6470 // protein amino acid dephosphorylation // traceable author statement /// 7015 // actin filament organization // traceable author statement /// 7094 // mitotic spindle checkpoint // inferred from physical interaction /// 7117 // budding cell bud growth // traceable author statement 159 // protein phosphatase type 2A complex // traceable author statement 158 // protein phosphatase type 2A activity // traceable author statement 1492.81384277344 1515.02783203125 1520.07043457031 1537.41381835938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL134C /GEN=PPH21 /DB_XREF=GI:6320067 /SEG=NC_001136:-219662,220771 /DEF=Catalytic subunit of protein phosphatase 2A, functionally redundant with Pph22p; methylated at C terminus; forms alternate complexes with several regulatory subunits; involved in signal transduction and regulation of mitosis /NOTE=Pph21p; go_component: protein phosphatase type 2A complex [goid GO:0000159] [evidence TAS] [pmid 10329624]; go_function: protein phosphatase type 2A activity [goid GO:0000158] [evidence TAS] [pmid 10329624]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IGI] [pmid 12518319]; go_process: actin filament organization [goid GO:0007015] [evidence TAS] [pmid 9001215]; go_process: bud growth [goid GO:0007117] [evidence TAS] [pmid 9001215]; go_process: mitotic spindle checkpoint [goid GO:0007094] [evidence IPI] [pmid 9001215]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence TAS] [pmid 9001215]; go_process: protein biosynthesis [goid GO:0006412] [evidence IPI] [pmid 10329624] --- --- --- --- --- --- S0002292 // PPH21 SGDID:S0002292, Chr IV from 220771-219662, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023671 // cdna:GeneFinder chromosome:SGD1:IV:219662:220771:-1 // ensembl // 11 // --- /// GENSCAN00000024999 // cdna:Genscan chromosome:SGD1:IV:219662:220771:-1 // ensembl // 11 // --- /// YDL134C // cdna:known chromosome:SGD1:IV:219662:220771:-1 gene:YDL134C // ensembl // 11 // --- --- No cerevisiae_gene -1.34784468948378 1.01488061580173 -1.04184129184551 1.01825853366032 1.02987644829383 Max fold change below threshold 4 1.34784468948378 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777554_at YKL145W.S1 One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates; required for optimal CDC20 transcription; interacts with Rpn12p and the E3 ubiquitin-protein ligase Ubr1p 1.34779866822843 3121.306640625 2433.18872070313 RPT1 6511 // ubiquitin-dependent protein catabolism // traceable author statement 8540 // proteasome regulatory particle, base subcomplex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement /// 16887 // ATPase activity // traceable author statement /// 16887 // ATPase activity // inferred from direct assay 2478.45239257813 3340.45483398438 2902.15844726563 2387.92504882813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL145W /GEN=RPT1 /DB_XREF=GI:6322704 /SEG=NC_001143:+174218,175621 /DEF=Required for degradation of ubiquitinated substrates and for anaphase chromosome separation /NOTE=Rpt1p; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence TAS] [pmid 9697412]; go_function: ATPase activity [goid GO:0016887] [evidence TAS] [pmid 9697412]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 9697412]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 9697412] --- --- --- --- --- --- S0001628 // RPT1 SGDID:S0001628, Chr XI from 174218-175621, Verified ORF // sgd // 11 // --- /// GENSCAN00000018310 // cdna:Genscan chromosome:SGD1:XI:174218:175621:1 // ensembl // 11 // --- /// GENEFINDER00000023010 // cdna:GeneFinder chromosome:SGD1:XI:174218:175898:1 // ensembl // 10 // --- /// YKL145W // cdna:known chromosome:SGD1:XI:174218:175621:1 gene:YKL145W // ensembl // 11 // --- --- No cerevisiae_gene -1.1076599388502 1.34779866822843 -1.01013252855001 1.17095589810654 -1.03791046280721 Max fold change below threshold 4 1.34779866822843 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779815_at YGR099W.S1 Essential DNA-binding protein specific to single-stranded yeast telomeric DNA repeats, required for telomere length regulation and telomere position effect 1.34765523282609 535.068313598633 468.870269775391 TEL2 7004 // telomerase-dependent telomere maintenance // inferred from mutant phenotype 783 // nuclear telomere cap complex // inferred from direct assay 42162 // telomeric DNA binding // inferred from direct assay 448.15966796875 511.680023193359 558.456604003906 489.580871582031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR099W /GEN=TEL2 /DB_XREF=GI:6321536 /SEG=NC_001139:+687901,689967 /DEF=Essential DNA-binding protein specific to single-stranded yeast telomeric DNA repeats, required for telomere length regulation and telomere position effect /NOTE=Tel2p; go_component: nuclear telomere cap complex [goid GO:0000783] [evidence IDA] [pmid 9490802]; go_function: telomeric DNA binding [goid GO:0042162] [evidence IDA] [pmid 10525964]; go_process: telomerase-dependent telomere maintenance [goid GO:0007004] [evidence IMP] [pmid 8649421] --- --- --- --- --- --- S0003331 // TEL2 SGDID:S0003331, Chr VII from 687903-689969, Verified ORF // sgd // 11 // --- /// GENSCAN00000019417 // cdna:Genscan chromosome:SGD1:VII:688323:689969:1 // ensembl // 11 // --- /// GENEFINDER00000021642 // cdna:GeneFinder chromosome:SGD1:VII:688455:689969:1 // ensembl // 11 // --- /// YGR099W // cdna:known chromosome:SGD1:VII:687903:689969:1 gene:YGR099W // ensembl // 11 // --- --- No cerevisiae_gene -1.26050115348337 1.14173599224694 1.34765523282609 1.24611080362289 1.09242510331423 Max fold change below threshold 4 1.34765523282609 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777044_at YOR352W.S1 Hypothetical protein 1.34747857839042 766.068603515625 656.365264892578 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 637.589294433594 715.288818359375 816.848388671875 675.141235351563 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR352W /GEN=MEK1 /DB_XREF=GI:6324928 /SEG=NC_001147:+997208,998239 /DEF=Hypothetical ORF /NOTE=Yor352wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005879 // YOR352W SGDID:S0005879, Chr XV from 997208-998239, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017804 // cdna:Genscan chromosome:SGD1:XV:997208:998239:1 // ensembl // 11 // --- /// GENEFINDER00000022684 // cdna:GeneFinder chromosome:SGD1:XV:997208:998239:1 // ensembl // 11 // --- /// YOR352W // cdna:known chromosome:SGD1:XV:997208:998239:1 gene:YOR352W // ensembl // 11 // --- --- No cerevisiae_gene -1.34747857839042 1.12186453662903 1.29582923577551 1.28115135527413 1.05889675571063 Max fold change below threshold 4 1.34747857839042 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774878_at YNL284C.S1 Mitochondrial ribosomal protein of the large subunit; appears as two protein spots (YmL10 and YmL18) on two-dimensional SDS gels 1.34717321591852 589.891448974609 645.576965332031 MRPL10 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 627.657531738281 473.891418457031 705.891479492188 663.496398925781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL284C /GEN=MRPL10 /DB_XREF=GI:6324045 /SEG=NC_001146:-103132,104100 /DEF=Mitochondrial ribosomal protein of the large subunit; appears as two protein spots (YmL10 and YmL18) on two-dimensional SDS gels /NOTE=Mrpl10p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0005228 // MRPL10 SGDID:S0005228, Chr XIV from 104100-103132, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019815 // cdna:Genscan chromosome:SGD1:XIV:103132:104100:-1 // ensembl // 11 // --- /// GENEFINDER00000020698 // cdna:GeneFinder chromosome:SGD1:XIV:103132:104013:-1 // ensembl // 11 // --- /// YNL284C // cdna:known chromosome:SGD1:XIV:103132:104100:-1 gene:YNL284C // ensembl // 11 // --- --- No cerevisiae_gene 1.10016899820791 -1.32447541207204 1.34717321591852 1.12464432241774 1.05709939796029 Max fold change below threshold 4 1.34717321591852 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770178_at YDL119C.S1 Hypothetical protein 1.34715670948825 146.827629089355 203.030784606934 --- 6810 // transport // inferred from sequence similarity 5743 // mitochondrial inner membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity 191.552688598633 142.190353393555 151.464904785156 214.508880615234 0.00415039015933871 0.0375977009534836 0.014160200022161 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL119C /GEN=YFH1 /DB_XREF=GI:6320085 /SEG=NC_001136:-246689,247612 /DEF=Hypothetical ORF /NOTE=Ydl119cp; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence ISS] [pmid 10930523]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 10930523]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 10930523] --- --- --- --- --- --- S0002277 // YDL119C SGDID:S0002277, Chr IV from 247612-246689, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025008 // cdna:Genscan chromosome:SGD1:IV:246689:247612:-1 // ensembl // 11 // --- /// YDL119C // cdna:known chromosome:SGD1:IV:246689:247612:-1 gene:YDL119C // ensembl // 11 // --- --- No cerevisiae_gene 1.07210897402553 -1.34715670948825 1.13020467360869 -1.2646671443153 1.11984270325071 Max fold change below threshold 4 1.34715670948825 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1776214_at YBR058C-A.S1 Protein that stimulates the activity of serine palmitoyltransferase (Lcb1p, Lcb2p) several-fold; involved in sphingolipid biosynthesis 1.34631041394406 705.660552978516 781.317657470703 TSC3 6666 // 3-keto-sphinganine metabolism // inferred from physical interaction /// 30148 // sphingolipid biosynthesis // traceable author statement 5624 // membrane fraction // inferred from direct assay /// 5792 // microsome // inferred from direct assay 8047 // enzyme activator activity // inferred from direct assay 734.163513183594 821.244812011719 590.076293945313 828.471801757813 0.00292969006113708 0.00805663969367743 0.00415039015933871 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR058C-A /GEN=TSC3 /DB_XREF=GI:14270689 /SEG=NC_001134:-356284,356526 /DEF=Involved in sphingolipid biosynthesis. Stimulates the activity of serine palmitoyltransferase (LCB1, LCB2) several-fold. /NOTE=Tsc3p; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 10713067]; go_component: microsome [goid GO:0005792] [evidence IDA] [pmid 10713067]; go_function: enzyme activator activity [goid GO:0008047] [evidence IDA] [pmid 10713067]; go_process: 3-keto-sphinganine metabolism [goid GO:0006666] [evidence IPI] [pmid 10713067]; go_process: sphingolipid biosynthesis [goid GO:0030148] [evidence TAS] [pmid 12185836] --- --- --- --- --- S0007521 // span:57-79 // numtm:1 S0007521 // TSC3 SGDID:S0007521, Chr II from 356564-356322, reverse complement, Verified ORF // sgd // 11 // --- /// YBR058C-A // cdna:known chromosome:SGD1:II:356322:356564:-1 gene:YBR058C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.34631041394406 1.11861294829337 1.04107358044849 -1.24418404995547 1.12845679045703 Max fold change below threshold 4 1.34631041394406 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1772763_at YGL250W.S1 Hypothetical protein 1.34620551636819 617.282379150391 691.77392578125 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 699.5693359375 557.020690917969 677.544067382813 683.978515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL250W /GEN=HFM1 /DB_XREF=GI:37362648 /SEG=NC_001139:+31910,32635 /DEF=Hypothetical ORF /NOTE=Ygl250wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003219 // YGL250W SGDID:S0003219, Chr VII from 31910-32635, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019164 // cdna:Genscan chromosome:SGD1:VII:31910:32635:1 // ensembl // 11 // --- /// GENEFINDER00000021763 // cdna:GeneFinder chromosome:SGD1:VII:31910:32635:1 // ensembl // 11 // --- /// YGL250W // cdna:known chromosome:SGD1:VII:31910:32635:1 gene:YGL250W // ensembl // 11 // --- --- No cerevisiae_gene -1.21678491535183 -1.25591265700492 1.34620551636819 -1.03250750706115 -1.0227943129153 Max fold change below threshold 4 1.34620551636819 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774929_at YLR330W.S1 Protein of unknown function, involved in chitin biosynthesis by regulating Chs3p localization, also involved in cell fusion during mating 1.34619757033128 1740.529296875 1386.03588867188 CHS5 747 // conjugation with cellular fusion // inferred from mutant phenotype /// 6039 // cell wall chitin catabolism // inferred from mutant phenotype /// 6893 // Golgi to plasma membrane transport // inferred from mutant phenotype /// 30476 // spore wall assembly (sensu Fungi) // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 1367.24328613281 1640.47900390625 1840.57958984375 1404.82849121094 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR330W /GEN=CHS5 /DB_XREF=GI:6323362 /SEG=NC_001144:+787664,789679 /DEF=Involved in chitin synthase III activity, also required for homozygosis in the first stages of mating /NOTE=Chs5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9008706]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi to plasma membrane transport [goid GO:0006893] [evidence IMP] [pmid 11879634]; go_process: cell wall chitin catabolism [goid GO:0006039] [evidence IMP] [pmid 9111317]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IMP] [pmid 9111317]; go_process: spore wall assembly (sensu Saccharomyces) [goid GO:0007152] [evidence IMP] [pmid 9111317] --- --- --- --- --- --- S0004322 // CHS5 SGDID:S0004322, Chr XII from 787664-789679, Verified ORF // sgd // 11 // --- /// GENSCAN00000018071 // cdna:Genscan chromosome:SGD1:XII:788024:789679:1 // ensembl // 11 // --- /// GENEFINDER00000024706 // cdna:GeneFinder chromosome:SGD1:XII:788165:789679:1 // ensembl // 11 // --- /// YLR330W // cdna:known chromosome:SGD1:XII:787664:789679:1 gene:YLR330W // ensembl // 11 // --- --- No cerevisiae_gene -1.04952752573486 1.1998442563549 -1.10288122857531 1.34619757033128 1.0274897711763 Max fold change below threshold 4 1.34619757033128 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770708_at YPL178W.S1 Small subunit of the heterodimeric cap binding complex that also contains Sto1p, component of the spliceosomal commitment complex; interacts with Npl3p, possibly to package mRNA for export from the nucleus; contains an RNA-binding motif 1.34563904797332 2299.0791015625 2946.58898925781 CBC2 398 // nuclear mRNA splicing, via spliceosome // inferred from mutant phenotype 243 // commitment complex // inferred from direct assay /// 5846 // snRNA cap binding complex // inferred from direct assay 339 // RNA cap binding // inferred from direct assay /// 339 // RNA cap binding // inferred from sequence similarity 2952.46118164063 2404.06225585938 2194.09594726563 2940.716796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL178W /GEN=CBC2 /DB_XREF=GI:6325079 /SEG=NC_001148:+212157,212783 /DEF=cap binding complex /NOTE=Cbc2p; go_component: commitment complex [goid GO:0000243] [evidence IDA] [pmid 8682299]; go_component: snRNA cap binding complex [goid GO:0005846] [evidence IDA] [pmid 8811086]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IMP,IPI] [pmid 8682299]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IMP] [pmid 8682299] --- --- --- --- --- --- S0006099 // CBC2 SGDID:S0006099, Chr XVI from 212157-212783, Verified ORF // sgd // 11 // --- /// U39665 // Saccharomyces cerevisiae CBP20 homolog mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000017050 // cdna:Genscan chromosome:SGD1:XVI:212157:212783:1 // ensembl // 11 // --- /// GENEFINDER00000020749 // cdna:GeneFinder chromosome:SGD1:XVI:212157:212783:1 // ensembl // 11 // --- /// YPL178W // cdna:known chromosome:SGD1:XVI:212157:212783:1 gene:YPL178W // ensembl // 11 // --- --- No cerevisiae_gene -1.01406220795448 -1.22811344608262 1.037670587494 -1.34563904797332 -1.00399371499428 Max fold change below threshold 4 1.34563904797332 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771978_at YGR252W.S1 Histone acetyltransferase, acetylates lysine 14 on histone H3; catalytic subunit of the ADA and SAGA histone acetyltransferase complexes; founding member of the Gcn5p-related N-acetyltransferase superfamily 1.34561425163899 331.869323730469 446.909606933594 GCN5 16568 // chromatin modification // traceable author statement /// 16573 // histone acetylation // traceable author statement 124 // SAGA complex // inferred from direct assay /// 5671 // Ada2/Gcn5/Ada3 transcription activator complex // inferred from physical interaction /// 46695 // SLIK (SAGA-like) complex // inferred from physical interaction 3713 // transcription coactivator activity // traceable author statement /// 4402 // histone acetyltransferase activity // traceable author statement 407.200286865234 304.377136230469 359.361511230469 486.618927001953 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR252W /GEN=GCN5 /DB_XREF=GI:6321691 /SEG=NC_001139:+996873,998192 /DEF=Histone acetyltransferase, acetylates lysine 14 on histone H3; catalytic subunit of the ADA and SAGA histone acetyltransferase complexes; founding member of the Gcn5p-related N-acetyltransferase superfamily /NOTE=Gcn5p; go_component: Ada2/Gcn5/Ada3 transcription activator complex [goid GO:0005671] [evidence IPI] [pmid 10490601]; go_component: SAGA complex [goid GO:0000124] [evidence IDA] [pmid 9674426]; go_function: histone acetyltransferase activity [goid GO:0004402] [evidence TAS] [pmid 10430845]; go_process: chromatin modification [goid GO:0016568] [evidence TAS] [pmid 10839822]; go_process: histone acetylation [goid GO:0016573] [evidence TAS] [pmid 10839822] --- --- --- --- --- --- S0003484 // GCN5 SGDID:S0003484, Chr VII from 996874-998193, Verified ORF // sgd // 11 // --- /// GENSCAN00000019534 // cdna:Genscan chromosome:SGD1:VII:996874:998193:1 // ensembl // 11 // --- /// GENEFINDER00000021567 // cdna:GeneFinder chromosome:SGD1:VII:996874:998193:1 // ensembl // 11 // --- /// YGR252W // cdna:known chromosome:SGD1:VII:996874:998193:1 gene:YGR252W // ensembl // 11 // --- --- No cerevisiae_gene 1.34561425163899 -1.33781496175491 1.12125430155528 -1.13312158965206 1.19503581578518 Max fold change below threshold 4 1.34561425163899 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776447_at YHR090C.S1 Subunit of the NuA4 histone acetyltransferase complex that acetylates histone H4 and H2A; has similarity to the human tumor suppressor ING1 1.34512165794797 414.159210205078 507.852920532227 YNG2 16568 // chromatin modification // inferred from mutant phenotype /// 16568 // chromatin modification // inferred from physical interaction /// 16568 // chromatin modification // inferred from sequence similarity 123 // histone acetyltransferase complex // inferred from direct assay /// 5634 // nucleus // inferred from direct assay /// 43189 // H4/H2A histone acetyltransferase complex // inferred from physical interaction 8047 // enzyme activator activity // inferred from mutant phenotype 433.114349365234 392.724243164063 435.594177246094 582.591491699219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR090C /GEN=YNG2 /DB_XREF=GI:6321882 /SEG=NC_001140:-283778,284626 /DEF=Yeast homolog of mammalian Ing1 /NOTE=Yng2p; go_component: histone acetyltransferase complex [goid GO:0000123] [evidence IDA] [pmid 11604499]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10805724]; go_function: enzyme activator activity [goid GO:0008047] [evidence IMP] [pmid 11544250]; go_process: chromatin modification [goid GO:0016568] [evidence IMP,IPI,ISS] [pmid 10805724] --- --- --- --- --- --- S0001132 // YNG2 SGDID:S0001132, Chr VIII from 284626-283778, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020302 // cdna:GeneFinder chromosome:SGD1:VIII:283760:284626:-1 // ensembl // 11 // --- /// YHR090C // cdna:known chromosome:SGD1:VIII:283778:284626:-1 gene:YHR090C // ensembl // 11 // --- --- No cerevisiae_gene 1.07065723215512 -1.10284597119791 1.25027664666684 1.00572557312981 1.34512165794797 Max fold change below threshold 4 1.34512165794797 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770156_at YHR146W.S1 Protein that binds to cruciform DNA structures 1.34490947138025 1267.62731933594 1257.68292236328 CRP1 --- 5634 // nucleus // inferred from curator 3677 // DNA binding // inferred from direct assay 1238.52429199219 1345.85510253906 1189.39953613281 1276.84155273438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR146W /GEN=CRP1 /DB_XREF=GI:6321940 /SEG=NC_001140:+390301,391698 /DEF=Protein that binds to cruciform DNA structures /NOTE=Crp1p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 12419258]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 12419258]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001189 // CRP1 SGDID:S0001189, Chr VIII from 390302-391699, Verified ORF // sgd // 11 // --- /// GENSCAN00000016674 // cdna:Genscan chromosome:SGD1:VIII:390302:391699:1 // ensembl // 11 // --- /// GENEFINDER00000020280 // cdna:GeneFinder chromosome:SGD1:VIII:390302:391699:1 // ensembl // 11 // --- /// YHR146W // cdna:known chromosome:SGD1:VIII:390302:391699:1 gene:YHR146W // ensembl // 11 // --- --- No cerevisiae_gene -1.34490947138025 1.08666023851194 -1.22907428310599 -1.04130214815713 1.03093783544653 Max fold change below threshold 4 1.34490947138025 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772986_at YDR219C.S1 Hypothetical protein 1.344857173058 294.510009765625 329.924041748047 --- 6511 // ubiquitin-dependent protein catabolism // inferred from sequence similarity 151 // ubiquitin ligase complex // inferred from sequence similarity 5515 // protein binding // inferred from sequence similarity 307.765563964844 302.813751220703 286.206268310547 352.08251953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR219C /GEN=SPR28 /DB_XREF=GI:6320425 /SEG=NC_001136:-905447,906844 /DEF=Hypothetical ORF /NOTE=Ydr219cp; go_component: ubiquitin ligase complex [goid GO:0000151] [evidence ISS] [pmid 9635407]; go_function: protein binding [goid GO:0005515] [evidence ISS] [pmid 9635407]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence ISS] [pmid 9635407] --- --- --- --- --- --- S0002627 // YDR219C SGDID:S0002627, Chr IV from 906846-905449, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025268 // cdna:Genscan chromosome:SGD1:IV:905449:906702:-1 // ensembl // 11 // --- /// YDR219C // cdna:known chromosome:SGD1:IV:905449:906846:-1 gene:YDR219C // ensembl // 11 // --- --- No cerevisiae_gene 1.01575926373608 -1.01635266801517 1.344857173058 -1.07532782486407 1.14399582264983 Max fold change below threshold 4 1.344857173058 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778300_at YCR019W.S1 Protein necessary for structural stability of L-A double-stranded RNA-containing particles 1.34473979088264 391.551300048828 454.328674316406 MAK32 16032 // viral life cycle // inferred from mutant phenotype --- --- 429.656494140625 350.773193359375 432.329406738281 479.000854492188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR019W /GEN=MAK32 /DB_XREF=GI:6319865 /SEG=NC_001135:+152834,153925 /DEF=Protein necessary for structural stability of L-A double-stranded RNA-containing particles /NOTE=Mak32p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: host-pathogen interaction [goid GO:0030383] [evidence IMP] [pmid 3551911] --- --- --- --- --- --- S0000612 // MAK32 SGDID:S0000612, Chr III from 152834-153925, Verified ORF // sgd // 11 // --- /// GENSCAN00000022473 // cdna:Genscan chromosome:SGD1:III:152834:153925:1 // ensembl // 11 // --- /// YCR019W // cdna:known chromosome:SGD1:III:152834:153925:1 gene:YCR019W // ensembl // 11 // --- --- No cerevisiae_gene -1.04006581254948 -1.22488406262115 1.34473979088264 1.0062210454959 1.11484607127901 Max fold change below threshold 4 1.34473979088264 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776846_at YLR292C.S1 Non-essential subunit of Sec63 complex (Sec63p, Sec62p, Sec66p and Sec72p); with Sec61 complex, Kar2p/BiP and Lhs1p forms a channel competent for SRP-dependent and post-translational SRP-independent protein targeting and import into the ER 1.34460911298734 319.380737304688 446.700271606445 SEC72 6620 // posttranslational protein-membrane targeting // traceable author statement 5789 // endoplasmic reticulum membrane // traceable author statement /// 31207 // Sec62/Sec63 complex // inferred from physical interaction 8565 // protein transporter activity // traceable author statement 396.435272216797 294.833099365234 343.928375244141 496.965270996094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR292C /GEN=SEC72 /DB_XREF=GI:6323323 /SEG=NC_001144:-719791,720372 /DEF=protein involved in membrane protein insertion into the ER /NOTE=Sec72p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence TAS] [pmid 10564637]; go_function: protein transporter activity [goid GO:0008565] [evidence TAS] [pmid 10564637]; go_process: SRP-dependent cotranslational membrane targeting, translocation [goid GO:0006616] [evidence TAS] [pmid 10564637] --- --- --- --- --- --- S0004283 // SEC72 SGDID:S0004283, Chr XII from 720372-719791, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024565 // cdna:GeneFinder chromosome:SGD1:XII:719791:720372:-1 // ensembl // 11 // --- /// YLR292C // cdna:known chromosome:SGD1:XII:719791:720372:-1 gene:YLR292C // ensembl // 11 // --- --- No cerevisiae_gene 1.27393778986329 -1.34460911298734 -1.09874799784791 -1.15266811566619 1.25358489979247 Max fold change below threshold 4 1.34460911298734 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773547_at YJR049C.S1 NAD kinase, active as a hexamer; enhances the activity of ferric reductase (Fre1p) 1.34429319623242 1096.05828857422 974.448028564453 UTR1 6879 // iron ion homeostasis // inferred from genetic interaction /// 19674 // NAD metabolism // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3951 // NAD+ kinase activity // inferred from direct assay 960.517517089844 1048.52575683594 1143.5908203125 988.378540039063 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR049C /GEN=UTR1 /DB_XREF=GI:6322509 /SEG=NC_001142:-526798,528390 /DEF=associated with ferric reductase /NOTE=Utr1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: NAD+ kinase activity [goid GO:0003951] [evidence IDA] [pmid 11425472]; go_process: NAD phosphorylation and dephosphorylation [goid GO:0019675] [evidence IDA] [pmid 11425472]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IGI] [pmid 8662826] --- --- --- --- --- --- S0003810 // UTR1 SGDID:S0003810, Chr X from 528390-526798, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024171 // cdna:Genscan chromosome:SGD1:X:526798:528390:-1 // ensembl // 11 // --- /// GENEFINDER00000024356 // cdna:GeneFinder chromosome:SGD1:X:526798:527700:-1 // ensembl // 11 // --- /// YJR049C // cdna:known chromosome:SGD1:X:526798:528390:-1 gene:YJR049C // ensembl // 11 // --- --- No cerevisiae_gene 1.34429319623242 1.09162585604138 1.26222569709233 1.19059860956761 1.02900626220085 Max fold change below threshold 4 1.34429319623242 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775181_at YGR003W.S1 Ubiquitin-protein ligase, member of the cullin family with similarity to Cdc53p and human CUL3; null mutation has no apparent phenotype 1.34427717535445 589.534118652344 680.133880615234 CUL3 6511 // ubiquitin-dependent protein catabolism // inferred from sequence similarity /// 6511 // ubiquitin-dependent protein catabolism // inferred from curator 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4842 // ubiquitin-protein ligase activity // inferred from direct assay /// 5515 // protein binding // inferred from physical interaction 674.973205566406 571.851806640625 607.216430664063 685.294555664063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR003W /GEN=CUL3 /DB_XREF=GI:6321440 /SEG=NC_001139:+500134,502368 /DEF=Ubiquitin-protein ligase, member of the cullin family with similarity to Cdc53p and human CUL3; null mutation has no apparent phenotype /NOTE=Cul3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 10230407]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence IDA] [pmid 12676951]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence IC] [pmid 12676951]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence ISS] [pmid 9531531] --- --- --- --- scop // a.4.5.SCF ubiquitin ligase complex WHB domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; SCF ubiquitin ligase complex WHB domain // 3.00000000951323E-30 --- S0003235 // CUL3 SGDID:S0003235, Chr VII from 500136-502370, Verified ORF // sgd // 11 // --- /// GENSCAN00000019342 // cdna:Genscan chromosome:SGD1:VII:500256:502370:1 // ensembl // 11 // --- /// YGR003W // cdna:known chromosome:SGD1:VII:500136:502370:1 gene:YGR003W // ensembl // 11 // --- --- No cerevisiae_gene 1.34427717535445 -1.1803288854355 -1.09981173807625 -1.11158587199006 1.01529149603649 Max fold change below threshold 4 1.34427717535445 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777233_at YLR250W.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.34396038019092 2289.16931152344 2140.03234863281 SSP120 9306 // protein secretion // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay --- 2221.98583984375 2334.64721679688 2243.69140625 2058.07885742188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR250W /GEN=SSP120 /DB_XREF=GI:6323279 /SEG=NC_001144:+640319,641023 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ssp120p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein secretion [goid GO:0009306] [evidence ISS] [pmid 1743509] --- --- --- --- --- --- S0004240 // SSP120 SGDID:S0004240, Chr XII from 640319-641023, Verified ORF // sgd // 11 // --- /// GENSCAN00000018014 // cdna:Genscan chromosome:SGD1:XII:640319:641023:1 // ensembl // 11 // --- /// GENEFINDER00000024646 // cdna:GeneFinder chromosome:SGD1:XII:640319:641023:1 // ensembl // 11 // --- /// YLR250W // cdna:known chromosome:SGD1:XII:640319:641023:1 gene:YLR250W // ensembl // 11 // --- --- No cerevisiae_gene -1.34396038019092 1.05070301301337 1.17371397392052 1.00976854398306 -1.07964076878337 Max fold change below threshold 4 1.34396038019092 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771391_at YDR490C.S1 Serine/threonine protein kinase involved in sphingolipid-mediated signaling pathway that controls endocytosis; activates Ypk1p and Ykr2p, components of signaling cascade required for maintenance of cell wall integrity; redundant with Pkh2p 1.34393137064931 1618.98114013672 1384.13952636719 PKH1 196 // MAPKKK cascade during cell wall biogenesis // inferred from genetic interaction /// 196 // MAPKKK cascade during cell wall biogenesis // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from direct assay /// 6897 // endocytosis // inferred from mutant phenotype 5829 // cytosol // inferred from direct assay 4672 // protein kinase activity // inferred from direct assay 1344.36206054688 1806.73034667969 1431.23193359375 1423.9169921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR490C /GEN=PKH1 /DB_XREF=GI:6320698 /SEG=NC_001136:-1431956,1434256 /DEF=Pkb-activating Kinase Homologue /NOTE=Pkh1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 12221112]; go_function: protein kinase activity [goid GO:0004672] [evidence IDA] [pmid 10074427]; go_process: MAPKKK cascade during cell wall biogenesis [goid GO:0000196] [evidence IGI,IMP] [pmid 10567559]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 11807089]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 10074427] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 5.0E-66 /// hanks // 1.7.2 // AGC group; AGC VII Budding yeast DBF2/20; DBF20 // 2.0E-78 --- --- S0002898 // PKH1 SGDID:S0002898, Chr IV from 1434258-1431958, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023555 // cdna:GeneFinder chromosome:SGD1:IV:1431958:1434258:-1 // ensembl // 11 // --- /// GENSCAN00000025485 // cdna:Genscan chromosome:SGD1:IV:1431958:1434258:-1 // ensembl // 11 // --- /// YDR490C // cdna:known chromosome:SGD1:IV:1431958:1434258:-1 gene:YDR490C // ensembl // 11 // --- --- No cerevisiae_gene -1.31138845293749 1.34393137064931 1.143790428306 1.06461791476884 1.05917671583819 Max fold change below threshold 4 1.34393137064931 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777336_at YIL065C.S1 Mitochondrial outer membrane protein involved in membrane fission, required for localization of Dnm1p and Mdv1p during mitochondrial division 1.34393033910871 1135.26007080078 984.285949707031 FIS1 266 // mitochondrial fission // inferred from mutant phenotype /// 266 // mitochondrial fission // inferred from genetic interaction 5741 // mitochondrial outer membrane // inferred from direct assay --- 934.53564453125 1014.5693359375 1255.95080566406 1034.03625488281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL065C /GEN=FIS1 /DB_XREF=GI:6322124 /SEG=NC_001141:-241305,241772 /DEF=Mitochondrial outer membrane protein involved in membrane fission, required for loalization of Dnm1p and Mdv1p during mitochondrial division /NOTE=Fis1p; go_component: mitochondrial outer membrane [goid GO:0005741] [evidence IDA] [pmid 11038183]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitochondrial fission [goid GO:0000266] [evidence IGI,IMP] [pmid 11038183] --- --- --- --- --- S0001327 // span:131-150 // numtm:1 S0001327 // FIS1 SGDID:S0001327, Chr IX from 241772-241305, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016428 // cdna:Genscan chromosome:SGD1:IX:241305:241772:-1 // ensembl // 11 // --- /// GENEFINDER00000019152 // cdna:GeneFinder chromosome:SGD1:IX:241305:241772:-1 // ensembl // 11 // --- /// YIL065C // cdna:known chromosome:SGD1:IX:241305:241772:-1 gene:YIL065C // ensembl // 11 // --- --- No cerevisiae_gene -1.22452134170675 1.08564006292814 1.17823754172699 1.34393033910871 1.1064706423279 Max fold change below threshold 4 1.34393033910871 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775699_at YLR113W.S1 Mitogen-activated protein kinase involved in osmoregulation via three independent osmosensors; mediates the recruitment and activation of RNA Pol II at Hot1p-dependent promoters; localization regulated by Ptp2p and Ptp3p 1.34384775277291 1241.89440917969 1143.38018798828 HOG1 6468 // protein amino acid phosphorylation // traceable author statement /// 6972 // hyperosmotic response // traceable author statement /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4707 // MAP kinase activity // traceable author statement 1091.03100585938 1017.60925292969 1466.17956542969 1195.72937011719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR113W /GEN=HOG1 /DB_XREF=GI:6323142 /SEG=NC_001144:+371621,372928 /DEF=Mitogen-activated protein kinase involved in osmoregulation via three independent osmosensors; mediates the recruitment and activation of RNA Pol II at Hot1p-dependent promoters; localization regulated by Ptp2p and Ptp3p /NOTE=Hog1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10817757]; go_function: MAP kinase activity [goid GO:0004707] [evidence TAS] [pmid 9744858]; go_process: hyperosmotic response [goid GO:0006972] [evidence TAS] [pmid 9744858]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IDA] [pmid 12743037]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 11283616] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-80 /// hanks // 3.1.7 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; PCTAIRE1 // 9.0E-84 --- --- S0004103 // HOG1 SGDID:S0004103, Chr XII from 371621-372928, Verified ORF // sgd // 11 // --- /// GENSCAN00000017907 // cdna:Genscan chromosome:SGD1:XII:371621:372928:1 // ensembl // 11 // --- /// GENEFINDER00000024699 // cdna:GeneFinder chromosome:SGD1:XII:371621:372928:1 // ensembl // 11 // --- /// YLR113W // cdna:known chromosome:SGD1:XII:371621:372928:1 gene:YLR113W // ensembl // 11 // --- --- No cerevisiae_gene 1.24020349247672 -1.07215122378094 1.26493282519513 1.34384775277291 1.09596277621399 Max fold change below threshold 4 1.34384775277291 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778477_at YIL138C.S1 Minor isoform of tropomyosin, binds to and stabilizes actin cables and filaments, which direct polarized cell growth and the distribution of several organelles; appears to have distinct and also overlapping functions with Tpm1p 1.34331420068245 349.686019897461 328.693145751953 TPM2 1 // mitochondrion inheritance // traceable author statement /// 11 // vacuole inheritance // traceable author statement /// 6887 // exocytosis // traceable author statement /// 7015 // actin filament organization // inferred from physical interaction /// 7118 // budding cell apical bud growth // inferred from genetic interaction /// 7118 // budding cell apical bud growth // inferred from physical interaction /// 7118 // budding cell apical bud growth // inferred from mutant phenotype /// 7119 // budding cell isotropic bud growth // inferred from mutant phenotype /// 7119 // budding cell isotropic bud growth // inferred from physical interaction /// 7119 // budding cell isotropic bud growth // inferred from genetic interaction /// 8154 // actin polymerization and/or depolymerization // inferred from mutant phenotype /// 8154 // actin polymerization and/or depolymerization // inferred from physical interaction /// 8154 // actin polymerization and/or depolymerization // inferred from genetic interaction /// 8298 // intracellular mRNA localization // traceable author statement /// 16192 // vesicle-mediated transport // traceable author statement /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from genetic interaction /// 45011 // actin cable formation // inferred from genetic interaction 142 // contractile ring (sensu Saccharomyces) // inferred from direct assay /// 30482 // actin cable // inferred from direct assay 3786 // actin lateral binding // traceable author statement 298.519348144531 345.415313720703 353.956726074219 358.866943359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL138C /GEN=TPM2 /DB_XREF=GI:6322053 /SEG=NC_001141:-89230,89715 /DEF=Actin-binding protein that stabilizes actin filaments; Tpm2 with Tpm1, the main tropomyosin, is required for the formation and stability of actin cables in vivo which direct polarized cell growth and the distribution of several organelles. /NOTE=Tpm2p; go_component: actin cable (sensu Fungi) [goid GO:0030482] [evidence IDA] [pmid 9864365]; go_component: contractile ring (sensu Saccharomyces) [goid GO:0000142] [evidence IDA] [pmid 9864365]; go_function: actin lateral binding [goid GO:0003786] [evidence TAS] [pmid 9153752]; go_process: actin cable formation [goid GO:0045011] [evidence IGI] [pmid 9864365]; go_process: actin filament organization [goid GO:0007015] [evidence IPI] [pmid 10652251]; go_process: actin polymerization and/or depolymerization [goid GO:0008154] [evidence IGI,IMP,IPI] [pmid 10652251]; go_process: apical bud growth [goid GO:0007118] [evidence IGI,IMP,IPI] [pmid 10652251]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IGI,IMP,IPI] [pmid 10652251]; go_process: exocytosis [goid GO:0006887] [evidence TAS] [pmid 10652251]; go_process: isotropic bud growth [goid GO:0007119] [evidence IGI,IMP,IPI] [pmid 10652251]; go_process: mRNA localization, intracellular [goid GO:0008298] [evidence TAS] [pmid 10652251]; go_process: mitochondrion inheritance [goid GO:0000001] [evidence TAS] [pmid 10652251]; go_process: vacuole inheritance [goid GO:0000011] [evidence TAS] [pmid 10652251]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence TAS] [pmid 10652251] --- --- --- --- --- --- S0001400 // TPM2 SGDID:S0001400, Chr IX from 89715-89230, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019081 // cdna:GeneFinder chromosome:SGD1:IX:89061:89715:-1 // ensembl // 10 // --- /// GENSCAN00000016371 // cdna:Genscan chromosome:SGD1:IX:89230:89715:-1 // ensembl // 11 // --- /// YIL138C // cdna:known chromosome:SGD1:IX:89230:89715:-1 gene:YIL138C // ensembl // 11 // --- --- No cerevisiae_gene 1.34331420068245 1.15709522973187 1.12222647952613 1.18570782186904 1.20215639485326 Max fold change below threshold 4 1.34331420068245 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771559_at YHR122W.S1 Protein required for cell viability 1.34285041148962 455.721862792969 551.216278076172 --- 6350 // transcription // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 563.922424316406 419.9443359375 491.499389648438 538.510131835938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR122W /GEN=MSH1 /DB_XREF=GI:6321914 /SEG=NC_001140:+353627,354322 /DEF=Protein required for cell viability /NOTE=Yhr122wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14690591]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: transcription [goid GO:0006350] [evidence IPI] [pmid 14690591] --- --- --- --- --- --- S0001164 // YHR122W SGDID:S0001164, Chr VIII from 353627-354322, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016659 // cdna:Genscan chromosome:SGD1:VIII:353627:354322:1 // ensembl // 11 // --- /// GENEFINDER00000020275 // cdna:GeneFinder chromosome:SGD1:VIII:353627:354322:1 // ensembl // 11 // --- /// YHR122W // cdna:known chromosome:SGD1:VIII:353627:354322:1 gene:YHR122W // ensembl // 11 // --- --- No cerevisiae_gene 1.16047635617614 -1.34285041148962 1.06143676391244 -1.14735121994713 -1.04718999880992 Max fold change below threshold 4 1.34285041148962 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771353_at YBR121C.S1 Cytoplasmic and mitochondrial glycyl-tRNA synthase that ligates glycine to the cognate anticodon bearing tRNA; transcription termination factor that may interact with the 3'-end of pre-mRNA to promote 3'-end formation 1.34266523707229 2593.39392089844 2429.38427734375 GRS1 6353 // transcription termination // inferred from mutant phenotype /// 6426 // glycyl-tRNA aminoacylation // inferred from sequence similarity /// 6426 // glycyl-tRNA aminoacylation // inferred from mutant phenotype 5737 // cytoplasm // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from direct assay 4820 // glycine-tRNA ligase activity // inferred from sequence similarity /// 4820 // glycine-tRNA ligase activity // inferred from mutant phenotype 2436.86181640625 2341.98022460938 2844.8076171875 2421.90673828125 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR121C /GEN=GRS1 /DB_XREF=GI:6319597 /SEG=NC_001134:-481320,483323 /DEF=Cytoplasmic and mitochondrial glycyl-tRNA synthase that ligates glycine to the cognate anticodon bearing tRNA; transcription termination factor that may interact with the 3'-end of pre-mRNA to promote 3'-end formation /NOTE=Grs1p; go_component: cytoplasm [goid GO:0005737] [evidence IMP] [pmid 10874035]; go_component: mitochondrion [goid GO:0005739] [evidence IMP] [pmid 10874035]; go_function: glycine-tRNA ligase activity [goid GO:0004820] [evidence IMP,ISS] [pmid 10874035]; go_process: glycyl-tRNA aminoacylation [goid GO:0006426] [evidence IMP,ISS] [pmid 10874035]; go_process: transcription termination [goid GO:0006353] [evidence IMP] [pmid 10224248] --- --- --- --- --- --- S0000325 // GRS1 SGDID:S0000325, Chr II from 483361-481358, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021237 // cdna:Genscan chromosome:SGD1:II:481358:483361:-1 // ensembl // 11 // --- /// GENEFINDER00000022335 // cdna:GeneFinder chromosome:SGD1:II:481358:483361:-1 // ensembl // 11 // --- /// YBR121C // cdna:known chromosome:SGD1:II:481358:483361:-1 gene:YBR121C // ensembl // 11 // --- --- No cerevisiae_gene 1.34266523707229 -1.04051340434042 -1.20801180637316 1.16740620991914 -1.00617491907868 Max fold change below threshold 4 1.34266523707229 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775201_at YPL257W.S1 Hypothetical protein 1.34237579264903 63.7336578369141 51.4903869628906 --- --- --- --- 59.0165328979492 59.267936706543 68.1993789672852 43.964241027832 0.00195312988944352 0.00805663969367743 0.00415039015933871 0.030273400247097 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL257W /GEN=THI21 /DB_XREF=GI:6324998 /SEG=NC_001148:+63279,63860 /DEF=Hypothetical ORF /NOTE=Ypl257wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0006178 // span:58-80,116-138,153-175 // numtm:3 S0006178 // YPL257W SGDID:S0006178, Chr XVI from 63279-63860, Uncharacterized ORF // sgd // 11 // --- /// YPL257W // cdna:known chromosome:SGD1:XVI:63279:63860:1 gene:YPL257W // ensembl // 11 // --- --- No cerevisiae_gene -1.29855632960208 1.00425988780175 -1.29476198538378 1.1555978573871 -1.34237579264903 Max fold change below threshold 4 1.34237579264903 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1771916_at YBR293W.S1 Permease of basic amino acids in the vacuolar membrane 1.34187099374005 192.330177307129 283.052917480469 VBA2 15802 // basic amino acid transport // inferred from mutant phenotype 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay 5286 // basic amino acid permease activity // inferred from direct assay /// 5286 // basic amino acid permease activity // inferred from mutant phenotype /// 15239 // multidrug transporter activity // inferred from sequence similarity 257.052551269531 193.097564697266 191.562789916992 309.053283691406 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR293W /GEN=CTP1 /DB_XREF=GI:6319770 /SEG=NC_001134:+786963,788387 /DEF=Hypothetical ORF /NOTE=Ybr293wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: multidrug transporter activity [goid GO:0015239] [evidence ISS] [pmid 9710608]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000497 // span:36-58,63-85,98-120,124-143,168-185,195-217,237-259,274-296,301-323,336-358,371-393,446-463 // numtm:12 S0000497 // YBR293W SGDID:S0000497, Chr II from 787001-788425, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021372 // cdna:Genscan chromosome:SGD1:II:787169:788425:1 // ensembl // 11 // --- /// YBR293W // cdna:known chromosome:SGD1:II:787001:788425:1 gene:YBR293W // ensembl // 11 // --- --- No cerevisiae_gene 1.22768107411311 -1.33120555752494 1.24157631788209 -1.34187099374005 1.20229611480242 Max fold change below threshold 4 1.34187099374005 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777350_at YAL060W.S1 NAD-dependent (2R,3R)-2,3-butanediol dehydrogenase, a zinc-containing medium-chain alcohol dehydrogenase, produces 2,3-butanediol from acetoin during fermentation and allows using 2,3-butanediol as a carbon source during aerobic growth 1.34168382818083 5565.099609375 4247.79418945313 BDH1 19650 // butanediol fermentation // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 721 // (R,R)-butanediol dehydrogenase activity // inferred from direct assay 4665.197265625 6259.2197265625 4870.9794921875 3830.39111328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL060W /GEN=BDH1 /DB_XREF=GI:6319258 /SEG=NC_001133:+35156,36304 /DEF=(2R,3R)-2,3-butanediol dehydrogenase /NOTE=Bdh1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: (R,R)-butanediol dehydrogenase activity [goid GO:0000721] [evidence IDA] [pmid 11306064]; go_process: butanediol fermentation [goid GO:0019650] [evidence IDA] [pmid 11306064] --- --- --- --- --- --- S0000056 // BDH1 SGDID:S0000056, Chr I from 35156-36304, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018184 // cdna:GeneFinder chromosome:SGD1:I:35156:36304:1 // ensembl // 11 // --- /// GENSCAN00000020326 // cdna:Genscan chromosome:SGD1:I:35156:36304:1 // ensembl // 11 // --- /// YAL060W // cdna:known chromosome:SGD1:I:35156:36304:1 gene:YAL060W // ensembl // 11 // --- --- No cerevisiae_gene -1.16382327953767 1.34168382818083 -1.08170220233395 1.04411008042013 -1.21794279687241 Max fold change below threshold 4 1.34168382818083 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776812_at YOL070C.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, and bud neck; potential Cdc28p substrate 1.34167581596826 592.179016113281 698.295349121094 --- --- 5737 // cytoplasm // inferred from direct assay /// 5935 // bud neck // inferred from direct assay --- 656.205810546875 512.1748046875 672.183227539063 740.384887695313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL070C /GEN=EMI5 /DB_XREF=GI:6324502 /SEG=NC_001147:-197219,198724 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, and bud neck; potential Cdc28p substrate /NOTE=Yol070cp; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 14562095]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005431 // YOL070C SGDID:S0005431, Chr XV from 198724-197219, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017410 // cdna:Genscan chromosome:SGD1:XV:197219:198658:-1 // ensembl // 11 // --- /// GENEFINDER00000022609 // cdna:GeneFinder chromosome:SGD1:XV:197219:198724:-1 // ensembl // 11 // --- /// YOL070C // cdna:known chromosome:SGD1:XV:197219:198724:-1 gene:YOL070C // ensembl // 11 // --- --- No cerevisiae_gene -1.07492024788418 -1.28121454734044 1.34167581596826 1.02434817969514 1.12828151746825 Max fold change below threshold 4 1.34167581596826 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770797_at YDR100W.S1 Tlg2-Vesicle Protein of 15 kDa; integral membrane vesicle protein 1.34153107199086 948.364959716797 1207.96575927734 --- --- 30137 // COPI-coated vesicle // inferred from direct assay --- 1160.427734375 865.002502441406 1031.72741699219 1255.50378417969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR100W /GEN=BMH2 /DB_XREF=GI:6320305 /SEG=NC_001136:+655007,655438 /DEF=Tlg2-Vesicle Protein of 15 kDa /NOTE=Ydr100wp --- --- --- --- --- S0002507 // span:30-52,65-87,91-113 // numtm:3 S0002507 // TVP15 SGDID:S0002507, Chr IV from 655008-655439, Uncharacterized ORF // sgd // 11 // --- /// YDR100W // cdna:known chromosome:SGD1:IV:655008:655439:1 gene:YDR100W // ensembl // 11 // --- --- No cerevisiae_gene -1.16314476785616 -1.34153107199086 1.11556155209471 -1.12474255822145 1.08193190061585 Max fold change below threshold 4 1.34153107199086 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772249_at YJR118C.S1 Protein of unknown function; may be involved in mitochondrial DNA maintenance; required for slowed DNA synthesis-induced filamentous growth 1.34142241619249 426.129013061523 535.661437988281 ILM1 2 // mitochondrial genome maintenance // inferred from mutant phenotype /// 30447 // filamentous growth // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay --- 512.046691894531 423.430389404297 428.82763671875 559.276184082031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR118C /GEN=ILM1 /DB_XREF=GI:6322578 /SEG=NC_001142:-643405,644016 /DEF=Protein of unknown function /NOTE=Ilm1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003879 // span:10-32,88-106,116-135 // numtm:3 S0003879 // ILM1 SGDID:S0003879, Chr X from 644016-643405, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024461 // cdna:GeneFinder chromosome:SGD1:X:643405:644016:-1 // ensembl // 11 // --- /// YJR118C // cdna:known chromosome:SGD1:X:643405:644016:-1 gene:YJR118C // ensembl // 11 // --- --- No cerevisiae_gene 1.34142241619249 -1.20928186712084 1.23130667810336 -1.19406178158793 1.09223669039391 Max fold change below threshold 4 1.34142241619249 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773117_at YHR037W.S1 Delta-1-pyrroline-5-carboxylate dehydrogenase, nuclear-encoded mitochondrial protein involved in utilization of proline as sole nitrogen source; deficiency of the human homolog causes HPII, an autosomal recessive inborn error of metabolism 1.34137226830241 2941.09643554688 2762.25390625 PUT2 6537 // glutamate biosynthesis // traceable author statement /// 6562 // proline catabolism // traceable author statement 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 3842 // 1-pyrroline-5-carboxylate dehydrogenase activity // traceable author statement 2853.58447265625 3076.19555664063 2805.99731445313 2670.92333984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR037W /GEN=PUT2 /DB_XREF=GI:6321826 /SEG=NC_001140:+181969,183696 /DEF=delta-1-pyrroline-5-carboxylate dehydrogenase /NOTE=Put2p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 10640599]; go_function: 1-pyrroline-5-carboxylate dehydrogenase activity [goid GO:0003842] [evidence TAS] [pmid 10640599]; go_process: glutamate biosynthesis [goid GO:0006537] [evidence TAS] [pmid 10640599]; go_process: proline catabolism [goid GO:0006562] [evidence TAS] [pmid 10640599] --- --- --- --- --- --- S0001079 // PUT2 SGDID:S0001079, Chr VIII from 181969-183696, Verified ORF // sgd // 11 // --- /// GENSCAN00000016585 // cdna:Genscan chromosome:SGD1:VIII:181969:183696:1 // ensembl // 11 // --- /// GENEFINDER00000020152 // cdna:GeneFinder chromosome:SGD1:VIII:181969:183696:1 // ensembl // 11 // --- /// YHR037W // cdna:known chromosome:SGD1:VIII:181969:183696:1 gene:YHR037W // ensembl // 11 // --- --- No cerevisiae_gene -1.34137226830241 1.07801103703692 -1.05467150545401 -1.01695908900483 -1.06838875908104 Max fold change below threshold 4 1.34137226830241 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-YFL039CM_at AFFX-YFL039CM Actin, structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions 1.34115344104699 3525.22729492188 3443.78491210938 ACT1 1 // mitochondrion inheritance // traceable author statement /// 11 // vacuole inheritance // traceable author statement /// 132 // establishment of mitotic spindle orientation // traceable author statement /// 910 // cytokinesis // traceable author statement /// 1300 // chronological cell aging // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 6887 // exocytosis // traceable author statement /// 6897 // endocytosis // traceable author statement /// 6970 // response to osmotic stress // traceable author statement /// 7047 // cell wall organization and biogenesis // traceable author statement /// 7119 // budding cell isotropic bud growth // traceable author statement /// 9306 // protein secretion // traceable author statement /// 16573 // histone acetylation // inferred from direct assay /// 30037 // actin filament reorganization during cell cycle // traceable author statement /// 30050 // vesicle transport along actin filament // traceable author statement /// 30437 // sporulation (sensu Fungi) // traceable author statement /// 30468 // establishment of cell polarity (sensu Fungi) // traceable author statement 123 // histone acetyltransferase complex // inferred from direct assay /// 142 // contractile ring (sensu Saccharomyces) // traceable author statement /// 812 // SWR1 complex // inferred from physical interaction /// 5884 // actin filament // traceable author statement /// 30479 // actin cortical patch // traceable author statement /// 30482 // actin cable // traceable author statement /// 31011 // INO80 complex // inferred from physical interaction /// 43189 // H4/H2A histone acetyltransferase complex // inferred from physical interaction 5200 // structural constituent of cytoskeleton // traceable author statement 3745.64477539063 3706.20874023438 3344.24584960938 3141.92504882813 4.53402870803643E-10 3.77846420818173E-10 3.77846420818173E-10 4.01554567375229E-10 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /GEN=ACT1 /DB_XREF=gb:V01288.1 /DB_XREF=spd:YFL039C /NOTE=SIF corresponding to nucleotides 880-1128 of gb:V01288.1 /DEF=Yeast gene for actin. --- --- --- --- --- --- S0001855 // ACT1 SGDID:S0001855, Chr VI from 54695-54686,54377-53260, reverse complement, intron sequence removed, Verified ORF // sgd // 49 // --- /// GENEFINDER00000018587 // cdna:GeneFinder chromosome:SGD1:VI:53260:54342:-1 // ensembl // 49 // --- /// GENSCAN00000023208 // cdna:Genscan chromosome:SGD1:VI:53260:54342:-1 // ensembl // 49 // --- /// YFL039C // cdna:known chromosome:SGD1:VI:53260:54695:-1 gene:YFL039C // ensembl // 49 // --- --- AFFX_control cerevisiae_gene -1.2548461811265 -1.01064053266297 -1.34115344104699 -1.12002673960951 -1.1921496271172 Max fold change below threshold 4 1.34115344104699 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778412_at YER023W.S1 Delta 1-pyrroline-5-carboxylate reductase, catalyzes the last step in proline biosynthesis 1.34112156290757 3515.10632324219 2819.28625488281 PRO3 6561 // proline biosynthesis // inferred from mutant phenotype /// 6561 // proline biosynthesis // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay 4735 // pyrroline-5-carboxylate reductase activity // inferred from genetic interaction /// 4735 // pyrroline-5-carboxylate reductase activity // inferred from sequence similarity 2886.69702148438 3158.80102539063 3871.41162109375 2751.87548828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER023W /GEN=PRO3 /DB_XREF=GI:6320861 /SEG=NC_001137:+201075,201935 /DEF=Delta 1-pyrroline-5-carboxylate reductase, catalyzes the last step in proline biosythesis /NOTE=Pro3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 7009582]; go_function: pyrroline-5-carboxylate reductase activity [goid GO:0004735] [evidence ISS] [pmid 1508147]; go_function: pyrroline-5-carboxylate reductase activity [goid GO:0004735] [evidence IGI] [pmid 2824433]; go_process: proline biosynthesis [goid GO:0006561] [evidence ISS] [pmid 1508147]; go_process: proline biosynthesis [goid GO:0006561] [evidence IMP] [pmid 2824433] --- --- --- --- --- --- S0000825 // PRO3 SGDID:S0000825, Chr V from 201075-201935, Verified ORF // sgd // 11 // --- /// GENSCAN00000016825 // cdna:Genscan chromosome:SGD1:V:201075:201935:1 // ensembl // 11 // --- /// GENEFINDER00000019634 // cdna:GeneFinder chromosome:SGD1:V:201075:201935:1 // ensembl // 11 // --- /// YER023W // cdna:known chromosome:SGD1:V:201075:201935:1 gene:YER023W // ensembl // 11 // --- YER023C-A // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene -1.10032562401654 1.09426136580358 1.02253501400679 1.34112156290757 -1.0489925993299 Max fold change below threshold 4 1.34112156290757 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769527_at YKL075C.S1 Hypothetical protein 1.34107528532599 533.283737182617 455.945098876953 --- --- 5737 // cytoplasm // inferred from direct assay --- 451.606719970703 460.928863525391 605.638610839844 460.283477783203 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL075C /GEN=DHR2 /DB_XREF=GI:6322775 /SEG=NC_001143:-292601,293953 /DEF=Hypothetical ORF /NOTE=Ykl075cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001558 // YKL075C SGDID:S0001558, Chr XI from 293953-292601, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018360 // cdna:Genscan chromosome:SGD1:XI:292601:293761:-1 // ensembl // 11 // --- /// GENEFINDER00000023106 // cdna:GeneFinder chromosome:SGD1:XI:292601:293953:-1 // ensembl // 11 // --- /// YKL075C // cdna:known chromosome:SGD1:XI:292601:293953:-1 gene:YKL075C // ensembl // 11 // --- YKL076C // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene -1.23862912729927 1.02064217192183 1.30783810976555 1.34107528532599 1.01921308392635 Max fold change below threshold 4 1.34107528532599 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778746_at YIL036W.S1 Basic leucine zipper (bZIP) transcription factor of the ATF/CREB family, activates transcription of genes involved in utilization of non-optimal carbon sources 1.34063472431996 1243.34411621094 1443.54650878906 CST6 6259 // DNA metabolism // inferred from genetic interaction /// 6367 // transcription initiation from RNA polymerase II promoter // inferred from direct assay 5634 // nucleus // inferred from physical interaction 3704 // specific RNA polymerase II transcription factor activity // inferred from direct assay 1420.06176757813 1201.58874511719 1285.09948730469 1467.03125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL036W /GEN=CST6 /DB_XREF=GI:6322153 /SEG=NC_001141:+285665,287428 /DEF=Basic leucine zipper (bZIP) transcription factor of the ATF/CREB family, activates transcription of genes involved in utilization of non-optimal carbon sources /NOTE=Cst6p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 10825197]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IDA] [pmid 10825197]; go_process: DNA metabolism [goid GO:0006259] [evidence IGI] [pmid 10454593]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence IDA] [pmid 10825197] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 6.69999980926514 --- S0001298 // CST6 SGDID:S0001298, Chr IX from 285665-287428, Verified ORF // sgd // 11 // --- /// GENSCAN00000016449 // cdna:Genscan chromosome:SGD1:IX:285665:287428:1 // ensembl // 11 // --- /// GENEFINDER00000019109 // cdna:GeneFinder chromosome:SGD1:IX:285665:287428:1 // ensembl // 11 // --- /// YIL036W // cdna:known chromosome:SGD1:IX:285665:287428:1 gene:YIL036W // ensembl // 11 // --- --- No cerevisiae_gene -1.34063472431996 -1.18182013051365 1.07771517696073 -1.10502088095646 1.03307566156223 Max fold change below threshold 4 1.34063472431996 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773621_at YDL004W.S1 Delta subunit of the central stalk of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis 1.34062528271623 3827.52001953125 2905.15161132813 ATP16 15986 // ATP synthesis coupled proton transport // inferred from mutant phenotype /// 15986 // ATP synthesis coupled proton transport // inferred from physical interaction /// 15986 // ATP synthesis coupled proton transport // inferred from sequence similarity 5756 // proton-transporting ATP synthase, central stalk (sensu Eukaryota) // inferred from mutant phenotype /// 5756 // proton-transporting ATP synthase, central stalk (sensu Eukaryota) // inferred from sequence similarity /// 5756 // proton-transporting ATP synthase, central stalk (sensu Eukaryota) // inferred from physical interaction 46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // inferred from mutant phenotype /// 46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // inferred from sequence similarity /// 46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // inferred from physical interaction 2952.27392578125 3957.89306640625 3697.14697265625 2858.029296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL004W /GEN=ATP16 /DB_XREF=GI:6320200 /SEG=NC_001136:+443026,443508 /DEF=Delta subunit of the central stalk of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis /NOTE=Atp16p; go_component: proton-transporting ATP synthase, central stalk (sensu Eukarya) [goid GO:0005756] [evidence IMP,IPI,ISS] [pmid 8026496]; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism [goid GO:0046933] [evidence IMP,IPI,ISS] [pmid 8026496]; go_process: ATP synthesis coupled proton transport [goid GO:0015986] [evidence IMP,IPI,ISS] [pmid 8026496] --- --- --- --- --- --- S0002162 // ATP16 SGDID:S0002162, Chr IV from 443026-443508, Verified ORF // sgd // 11 // --- /// GENSCAN00000025095 // cdna:Genscan chromosome:SGD1:IV:443026:443508:1 // ensembl // 11 // --- /// YDL004W // cdna:known chromosome:SGD1:IV:443026:443508:1 gene:YDL004W // ensembl // 11 // --- --- No cerevisiae_gene -1.11737253790238 1.34062528271623 1.01138853343482 1.25230485571487 -1.03297538937382 Max fold change below threshold 4 1.34062528271623 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778544_at YMR145C.S1 Mitochondrial external NADH dehydrogenase, catalyzes the oxidation of cytosolic NADH; Nde1p and Nde2p are involved in providing the cytosolic NADH to the mitochondrial respiratory chain 1.33969031757635 4566.04467773438 3433.1748046875 NDE1 6116 // NADH oxidation // inferred from direct assay /// 19655 // ethanol fermentation // inferred from mutant phenotype 5739 // mitochondrion // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from direct assay 3954 // NADH dehydrogenase activity // inferred from direct assay /// 3954 // NADH dehydrogenase activity // inferred from sequence similarity 3931.62377929688 5235.78466796875 3896.3046875 2934.72583007813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR145C /GEN=NDE1 /DB_XREF=GI:6323794 /SEG=NC_001145:-554792,556474 /DEF=Nde1p /NOTE=go_component: mitochondrion [goid GO:0005739] [evidence IDA,IMP] [pmid 9696750]; go_function: NADH dehydrogenase activity [goid GO:0003954] [evidence IDA,ISS] [pmid 9696750]; go_process: NADH oxidation [goid GO:0006116] [evidence IDA] [pmid 12032156]; go_process: ethanol fermentation [goid GO:0019655] [evidence IMP] [pmid 9696750] --- --- --- --- --- --- S0004753 // NDE1 SGDID:S0004753, Chr XIII from 556474-554792, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018834 // cdna:Genscan chromosome:SGD1:XIII:554792:556474:-1 // ensembl // 11 // --- /// GENEFINDER00000021919 // cdna:GeneFinder chromosome:SGD1:XIII:554792:556474:-1 // ensembl // 11 // --- /// YMR145C // cdna:known chromosome:SGD1:XIII:554792:556474:-1 gene:YMR145C // ensembl // 11 // --- --- No cerevisiae_gene -1.01060924611014 1.33171049975313 -1.19437612863243 -1.00906476639524 -1.33969031757635 Max fold change below threshold 4 1.33969031757635 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778588_at YJL002C.S1 Alpha subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes asparagine-linked glycosylation of newly synthesized proteins 1.33928506681003 1676.17114257813 2001.34967041016 OST1 6487 // N-linked glycosylation // inferred from direct assay /// 18279 // N-linked glycosylation via asparagine // inferred from physical interaction 5788 // endoplasmic reticulum lumen // traceable author statement /// 8250 // oligosaccharyl transferase complex // inferred from physical interaction 4579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from direct assay 1988.42944335938 1867.64758300781 1484.69470214844 2014.26989746094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL002C /GEN=OST1 /DB_XREF=GI:6322458 /SEG=NC_001142:-433136,434566 /DEF=Alpha subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes aspargine-linked glycosylation of newly synthesized proteins /NOTE=Ost1p; go_component: endoplasmic reticulum lumen [goid GO:0005788] [evidence TAS] [pmid 9015380]; go_component: oligosaccharyl transferase complex [goid GO:0008250] [evidence IPI] [pmid 10358084]; go_function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity [goid GO:0004579] [evidence IDA] [pmid 9015380]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IDA] [pmid 9015380]; go_process: N-linked glycosylation via asparagine [goid GO:0018279] [evidence IPI] [pmid 9988747] --- --- --- --- --- S0003539 // span:450-467 // numtm:1 S0003539 // OST1 SGDID:S0003539, Chr X from 434566-433136, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024131 // cdna:Genscan chromosome:SGD1:X:433136:434566:-1 // ensembl // 11 // --- /// GENEFINDER00000024423 // cdna:GeneFinder chromosome:SGD1:X:433136:434566:-1 // ensembl // 11 // --- /// YJL002C // cdna:known chromosome:SGD1:X:433136:434566:-1 gene:YJL002C // ensembl // 11 // --- --- No cerevisiae_gene 1.157243805625 -1.06467058424215 -1.12472605488376 -1.33928506681003 1.01299540910937 Max fold change below threshold 4 1.33928506681003 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779080_at YDR498C.S1 Membrane glycoprotein v-SNARE involved in retrograde transport from the Golgi to the ER; required for N- and O-glycosylation in the Golgi but not in the ER; forms a complex with the cytosolic Tip20p 1.33869042204653 1449.16571044922 1176.20495605469 SEC20 6890 // retrograde transport, Golgi to ER // traceable author statement /// 6906 // vesicle fusion // traceable author statement 5783 // endoplasmic reticulum // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // traceable author statement 5485 // v-SNARE activity // traceable author statement 1120.56579589844 1500.09069824219 1398.24072265625 1231.84411621094 0.00195312988944352 0.00195312988944352 0.00292969006113708 0.00292969006113708 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR498C /GEN=SEC20 /DB_XREF=GI:6320706 /SEG=NC_001136:-1445831,1446982 /DEF=Identified in a screen for dense cells that accumulated invertase at the non-permissive temperature, SEC20 encodes a membrane glycoprotein v-SNARE involved in retrograde transport from the Golgi to the ER. /NOTE=Sec20p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11914276]; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence TAS] [pmid 10047442]; go_function: v-SNARE activity [goid GO:0005485] [evidence TAS] [pmid 10047442]; go_process: retrograde transport, Golgi to ER [goid GO:0006890] [evidence TAS] [pmid 10047442]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 10047442] --- --- --- --- --- --- S0002906 // SEC20 SGDID:S0002906, Chr IV from 1446984-1445833, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023489 // cdna:GeneFinder chromosome:SGD1:IV:1445833:1446735:-1 // ensembl // 11 // --- /// GENSCAN00000025490 // cdna:Genscan chromosome:SGD1:IV:1445833:1446984:-1 // ensembl // 11 // --- /// YDR498C // cdna:known chromosome:SGD1:IV:1445833:1446984:-1 gene:YDR498C // ensembl // 11 // --- --- No cerevisiae_gene -1.19410499702504 1.33869042204653 1.10689441619665 1.24779885998143 1.09930547650107 Max fold change below threshold 4 1.33869042204653 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779144_at YKL156W.S1 Protein component of the small (40S) ribosomal subunit; nearly identical to Rps27Bp and has similarity to rat S27 ribosomal protein 1.3380391402699 2750.17114257813 2598.07287597656 RPS27A 6412 // protein biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 2707.642578125 3102.86157226563 2397.48071289063 2488.50317382813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL156W /GEN=RPS27A /DB_XREF=GI:6322693 /SEG=NC_001143:+158619,159217 /DEF=Protein component of the small (40S) ribosomal subunit; nearly identical to Rps27Bp and has similarity to rat S27 ribosomal protein /NOTE=Rps27ap; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence TAS] [pmid 9559554]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9559554]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] --- --- --- --- --- --- S0001639 // RPS27A SGDID:S0001639, Chr XI from 158619-158621,158972-159217, intron sequence removed, Verified ORF // sgd // 11 // --- /// YKL156W // cdna:known chromosome:SGD1:XI:158619:159217:1 gene:YKL156W // ensembl // 11 // --- YKL156C-A // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene 1.27809033746347 1.14596424112015 -1.3380391402699 -1.12936991049259 -1.08806072927758 Max fold change below threshold 4 1.3380391402699 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779265_at YBR071W.S1 Hypothetical protein 1.33783956141309 193.413711547852 225.281852722168 --- --- 5737 // cytoplasm // inferred from direct assay --- 215.910659790039 161.387557983398 225.439865112305 234.653045654297 0.00122069998178631 0.000244141003349796 0.000244141003349796 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR071W /GEN=TAT1 /DB_XREF=GI:6319545 /SEG=NC_001134:+380371,381006 /DEF=Hypothetical ORF /NOTE=Ybr071wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000275 // YBR071W SGDID:S0000275, Chr II from 380408-381043, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021195 // cdna:Genscan chromosome:SGD1:II:380408:381043:1 // ensembl // 11 // --- /// YBR071W // cdna:known chromosome:SGD1:II:380408:381043:1 gene:YBR071W // ensembl // 11 // --- --- No cerevisiae_gene 1.28480519431875 -1.33783956141309 1.03497765111197 1.04413494605376 1.08680620902406 Max fold change below threshold 4 1.33783956141309 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770922_at YMR298W.S1 Ceramide synthase subunit; single-span ER membrane protein associated with Lag1p and Lac1p and required for ceramide synthase activity, null mutant grows extremely slowly and is defective in ceramide synthesis 1.33752882267761 1632.85516357422 2110.05725097656 LIP1 46513 // ceramide biosynthesis // inferred from mutant phenotype /// 46513 // ceramide biosynthesis // inferred from physical interaction 5635 // nuclear membrane // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // inferred from direct assay 50291 // sphingosine N-acyltransferase activity // inferred from mutant phenotype /// 50291 // sphingosine N-acyltransferase activity // inferred from physical interaction 2081.291015625 1709.63842773438 1556.07189941406 2138.82348632813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR298W /GEN=PRC1 /DB_XREF=GI:6323956 /SEG=NC_001145:+863818,864270 /DEF=Protein required for cell viability /NOTE=Ymr298wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14690591]; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004913 // span:21-40 // numtm:1 S0004913 // YMR298W SGDID:S0004913, Chr XIII from 863818-864270, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000021852 // cdna:GeneFinder chromosome:SGD1:XIII:863818:864270:1 // ensembl // 11 // --- /// YMR298W // cdna:known chromosome:SGD1:XIII:863818:864270:1 gene:YMR298W // ensembl // 11 // --- --- No cerevisiae_gene -1.01857280388457 -1.21738666016249 1.17833720900771 -1.33752882267761 1.02764268440656 Max fold change below threshold 4 1.33752882267761 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772054_at YJR078W.S1 Tryptophan 2,3-dioxygenase, required for biosynthesis of nicotinic acid from tryptophan via kynurenine pathway /// Hypothetical protein 1.3374103049312 160.649597167969 192.18896484375 BNA2 9435 // NAD biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4833 // tryptophan 2,3-dioxygenase activity // traceable author statement 184.756164550781 138.144714355469 183.154479980469 199.621765136719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR078W /GEN=BNA2 /DB_XREF=GI:6322538 /SEG=NC_001142:+578774,580135 /DEF=Tryptophan 2,3-dioxygenase, required for biosynthesis of nicotinic acid from tryptophan via kynurenine pathway /NOTE=Bna2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: tryptophan 2,3-dioxygenase activity [goid GO:0004833] [evidence TAS] [pmid 12062417]; go_process: NAD biosynthesis [goid GO:0009435] [evidence IMP] [pmid 12062417] --- --- --- --- scop // a.4.5.Plant O-methyltransferase, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Plant O-methyltransferase, N-terminal domain // 0.430000007152557 --- S0003839 // BNA2 SGDID:S0003839, Chr X from 578774-580135, Verified ORF // sgd // 11 // --- /// GENSCAN00000024196 // cdna:Genscan chromosome:SGD1:X:578774:580135:1 // ensembl // 11 // --- /// GENEFINDER00000024280 // cdna:GeneFinder chromosome:SGD1:X:578822:580135:1 // ensembl // 11 // --- /// YJR078W // cdna:known chromosome:SGD1:X:578774:580135:1 gene:YJR078W // ensembl // 11 // --- --- No cerevisiae_gene 1.14663747978639 -1.3374103049312 1.08505175839804 -1.00874499259032 1.08046064726491 Max fold change below threshold 4 1.3374103049312 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777314_at YJR007W.S1 Alpha subunit of the translation initiation factor eIF2, involved in the identification of the start codon; phosphorylation of Ser51 is required for regulation of translation by inhibiting the exchange of GDP for GTP 1.33739999564742 1720.93939208984 1447.00726318359 SUI2 6413 // translational initiation // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5840 // ribosome // traceable author statement /// 5850 // eukaryotic translation initiation factor 2 complex // inferred from mutant phenotype /// 5850 // eukaryotic translation initiation factor 2 complex // inferred from sequence similarity 3743 // translation initiation factor activity // traceable author statement 1424.71215820313 1660.03491210938 1781.84387207031 1469.30236816406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR007W /GEN=SUI2 /DB_XREF=GI:6322466 /SEG=NC_001142:+450934,451848 /DEF=Alpha subunit of the translation initiation factor eIF2, involved in the identification of the start codon; phosphorylation of Ser51 is required for regulation of translation by inhibiting the exchange of GDP for GTP /NOTE=Sui2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 9841679]; go_function: translation initiation factor activity [goid GO:0003743] [evidence TAS] [pmid 9841679]; go_process: translational initiation [goid GO:0006413] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0003767 // SUI2 SGDID:S0003767, Chr X from 450934-451848, Verified ORF // sgd // 10 // --- /// GENSCAN00000024139 // cdna:Genscan chromosome:SGD1:X:450934:451848:1 // ensembl // 10 // --- /// GENEFINDER00000024519 // cdna:GeneFinder chromosome:SGD1:X:450934:451848:1 // ensembl // 10 // --- /// YJR007W // cdna:known chromosome:SGD1:X:450934:451848:1 gene:YJR007W // ensembl // 10 // --- --- No cerevisiae_gene 1.33739999564742 1.1651721384922 -1.04610267386581 1.2506693803453 1.03129769736588 Max fold change below threshold 4 1.33739999564742 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773101_at YPL214C.S1 Bifunctional enzyme with thiamine-phosphate pyrophosphorylase and 4-methyl-5-beta-hydroxyethylthiazole kinase activities, required for thiamine biosynthesis; GFP-fusion protein localizes to the cytoplasm in a punctate pattern 1.33678282864028 868.531311035156 747.896606445313 THI6 9228 // thiamin biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay 4417 // hydroxyethylthiazole kinase activity // traceable author statement /// 4789 // thiamin-phosphate diphosphorylase activity // traceable author statement 691.632446289063 820.230834960938 916.831787109375 804.160766601563 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL214C /GEN=THI6 /DB_XREF=GI:6325042 /SEG=NC_001148:-148568,150190 /DEF=Bifunctional enzyme with thiamine-phosphate pyrophosphorylase and 4-methyl-5-beta-hydroxyethylthiazole kinase activities, required for thiamine biosynthesis; GFP-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Thi6p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: hydroxyethylthiazole kinase activity [goid GO:0004417] [evidence TAS] [pmid 9655908]; go_function: thiamin-phosphate diphosphorylase activity [goid GO:0004789] [evidence TAS] [pmid 9655908]; go_process: thiamin biosynthesis [goid GO:0009228] [evidence TAS] [pmid 9655908] --- --- --- --- --- --- S0006135 // THI6 SGDID:S0006135, Chr XVI from 150190-148568, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017024 // cdna:Genscan chromosome:SGD1:XVI:148568:150190:-1 // ensembl // 11 // --- /// GENEFINDER00000021039 // cdna:GeneFinder chromosome:SGD1:XVI:148568:150190:-1 // ensembl // 11 // --- /// YPL214C // cdna:known chromosome:SGD1:XVI:148568:150190:-1 gene:YPL214C // ensembl // 11 // --- --- No cerevisiae_gene 1.05548352560506 1.18593458037122 1.33678282864028 1.32560551782759 1.16269959704214 Max fold change below threshold 4 1.33678282864028 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772224_at YDR202C.S1 Subunit of RAVE (Rav1p, Rav2p, Skp1p), a complex that associates with the V1 domain of the vacuolar membrane (H+)-ATPase (V-ATPase) and promotes assembly and reassembly of the holoenzyme 1.33669526533426 1280.82012939453 1467.71722412109 RAV2 7035 // vacuolar acidification // inferred from genetic interaction /// 7035 // vacuolar acidification // inferred from mutant phenotype /// 43254 // regulation of protein complex assembly // inferred from physical interaction /// 43254 // regulation of protein complex assembly // inferred from mutant phenotype /// 43254 // regulation of protein complex assembly // inferred from genetic interaction 43291 // RAVE complex // inferred from physical interaction --- 1413.9189453125 1162.41564941406 1399.224609375 1521.51550292969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR202C /GEN=RAV2 /DB_XREF=GI:6320409 /SEG=NC_001136:-856891,857946 /DEF=Regulator of (H+)-ATPase in Vacuolar membrane /NOTE=Rav2p; go_component: hydrogen-transporting ATPase V1 domain [goid GO:0000221] [evidence IPI] [pmid 11283612]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: vacuolar acidification [goid GO:0007035] [evidence IGI,IMP,IPI] [pmid 11283612] --- --- --- --- --- --- S0002610 // RAV2 SGDID:S0002610, Chr IV from 857948-856893, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025251 // cdna:Genscan chromosome:SGD1:IV:856893:857948:-1 // ensembl // 11 // --- /// YDR202C // cdna:known chromosome:SGD1:IV:856893:857948:-1 gene:YDR202C // ensembl // 11 // --- --- No cerevisiae_gene -1.03256042415584 -1.21636262039763 1.33669526533426 -1.01050177065144 1.07609810871684 Max fold change below threshold 4 1.33669526533426 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776908_at YNL131W.S1 Constituent of the mitochondrial outer membrane translocase complex involved in protein import into mitochondria 1.33644594165469 1244.78363037109 1577.37664794922 TOM22 30150 // mitochondrial matrix protein import // inferred from mutant phenotype /// 30150 // mitochondrial matrix protein import // inferred from physical interaction 5742 // mitochondrial outer membrane translocase complex // traceable author statement 8565 // protein transporter activity // traceable author statement 1542.76940917969 1231.81530761719 1257.751953125 1611.98388671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL131W /GEN=TOM22 /DB_XREF=GI:6324198 /SEG=NC_001146:+378767,379225 /DEF=Translocase of Outer Mitochondrial membrane /NOTE=Tom22p; go_component: mitochondrial outer membrane translocase complex [goid GO:0005742] [evidence TAS] [pmid 8599107]; go_function: protein transporter activity [goid GO:0008565] [evidence TAS] [pmid 8599107]; go_process: mitochondrial matrix protein import [goid GO:0030150] [evidence IMP,IPI] [pmid 9774667] --- --- --- --- --- --- S0005075 // TOM22 SGDID:S0005075, Chr XIV from 378767-379225, Verified ORF // sgd // 11 // --- /// GENSCAN00000019928 // cdna:Genscan chromosome:SGD1:XIV:378767:379225:1 // ensembl // 11 // --- /// YNL131W // cdna:known chromosome:SGD1:XIV:378767:379225:1 gene:YNL131W // ensembl // 11 // --- --- No cerevisiae_gene -1.33644594165469 -1.25243565300711 1.04829073249732 -1.22660863721701 1.04486378659521 Max fold change below threshold 4 1.33644594165469 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777219_at YNL134C.S1 --- 1.33635406774043 5274.80712890625 4351.19421386719 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8106 // alcohol dehydrogenase (NADP+) activity // non-traceable author statement 4707.2021484375 5624.701171875 4924.9130859375 3995.18627929688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL134C /GEN=FPR1 /DB_XREF=GI:6324195 /SEG=NC_001146:-372451,373581 /DEF=Ynl134cp /NOTE=go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: alcohol dehydrogenase (NADP+) activity [goid GO:0008106] [evidence NAS] [pmid 10347154]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005078 // YNL134C SGDID:S0005078, Chr XIV from 373581-372451, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019926 // cdna:Genscan chromosome:SGD1:XIV:372451:373581:-1 // ensembl // 11 // --- /// GENEFINDER00000020601 // cdna:GeneFinder chromosome:SGD1:XIV:372451:373581:-1 // ensembl // 11 // --- /// YNL134C // cdna:known chromosome:SGD1:XIV:372451:373581:-1 gene:YNL134C // ensembl // 11 // --- --- No cerevisiae_gene -1.33635406774043 1.19491387760818 1.01651402698035 1.04625060293454 -1.17821844073462 Max fold change below threshold 4 1.33635406774043 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769844_at YFL046W.S1 The authentic, non-tagged protein was localized to the mitochondria 1.33628425819104 230.983978271484 275.196044921875 --- --- 5739 // mitochondrion // inferred from direct assay --- 252.066772460938 188.632598876953 273.335357666016 298.325317382813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL046W /GEN=RGD2 /DB_XREF=GI:14318473 /SEG=NC_001138:+42815,43438 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Yfl046wp --- --- --- --- --- S0001848 // span:184-206 // numtm:1 S0001848 // FMP32 SGDID:S0001848, Chr VI from 42815-43438, Uncharacterized ORF // sgd // 11 // --- /// YFL046W // cdna:known chromosome:SGD1:VI:42815:43438:1 gene:YFL046W // ensembl // 11 // --- --- No cerevisiae_gene 1.00750043221783 -1.33628425819104 1.26743205947317 1.08437679031406 1.18351702792975 Max fold change below threshold 4 1.33628425819104 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774990_at YOR159C.S1 Required for pre-mRNA splicing, cap modification and U1, U2, U4 and U5 snRNA stability; homologue of human E core protein 1.33601582835705 177.311569213867 177.55394744873 SME1 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction 46540 // U4/U6 x U5 tri-snRNP complex // inferred from physical interaction 31202 // RNA splicing factor activity, transesterification mechanism // inferred from physical interaction 155.098602294922 166.126449584961 188.496688842773 200.009292602539 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR159C /GEN=SME1 /DB_XREF=GI:6324733 /SEG=NC_001147:-633282,633566 /DEF=Required for pre-mRNA splicing, cap modification and U1, U2, U4 and U5 snRNA stability /NOTE=Sme1p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence IDA] [pmid 10377396]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10377396] --- --- --- --- --- --- S0005685 // SME1 SGDID:S0005685, Chr XV from 633566-633282, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017583 // cdna:Genscan chromosome:SGD1:XV:633282:633539:-1 // ensembl // 10 // --- /// YOR159C // cdna:known chromosome:SGD1:XV:633282:633566:-1 gene:YOR159C // ensembl // 11 // --- --- No cerevisiae_gene 1.33601582835705 1.07110217066347 1.10290930963736 1.21533454237289 1.28956218588108 Max fold change below threshold 4 1.33601582835705 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779213_at YFR043C.S1 Hypothetical protein 1.33595844006067 495.712387084961 668.434051513672 --- --- --- --- 635.192260742188 475.458099365234 515.966674804688 701.675842285156 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR043C /GEN=ERJ5 /DB_XREF=GI:14318568 /SEG=NC_001138:-239101,239814 /DEF=Hypothetical ORF /NOTE=Yfr043cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001939 // YFR043C SGDID:S0001939, Chr VI from 239814-239101, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000023279 // cdna:Genscan chromosome:SGD1:VI:239101:239568:-1 // ensembl // 9 // --- /// YFR043C // cdna:known chromosome:SGD1:VI:239101:239814:-1 gene:YFR043C // ensembl // 11 // --- --- No cerevisiae_gene -1.04642051344134 -1.33595844006067 1.21309225818416 -1.23107226059247 1.10466686332936 Max fold change below threshold 4 1.33595844006067 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778095_at YER115C.S1 Protein of unknown function, expressed during sporulation; not required for sporulation, but gene exhibits genetic interactions with other genes required for sporulation 1.33552441242443 828.671264648438 695.284057617188 SPR6 30437 // sporulation (sensu Fungi) // inferred from expression pattern --- --- 668.976135253906 893.433959960938 763.908569335938 721.591979980469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER115C /GEN=SPR6 /DB_XREF=GI:6320961 /SEG=NC_001137:-394288,394863 /DEF=sporulation-specific protein /NOTE=Spr6p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: sporulation (sensu Fungi) [goid GO:0030437] [evidence IEP] [pmid 2253272] --- --- --- --- --- --- S0000917 // SPR6 SGDID:S0000917, Chr V from 394863-394288, reverse complement, Verified ORF // sgd // 11 // --- /// YER115C // cdna:known chromosome:SGD1:V:394288:394863:-1 gene:YER115C // ensembl // 11 // --- --- No cerevisiae_gene 1.15041040535997 1.33552441242443 -1.13127080652796 1.14190705628983 1.07865130301934 Max fold change below threshold 4 1.33552441242443 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779304_at YDL141W.S1 Biotin:apoprotein ligase, covalently modifies proteins with the addition of biotin, required for acetyl-CoA carboxylase (Acc1p) holoenzyme formation 1.33535472854858 394.329803466797 424.369766235352 BPL1 9305 // protein amino acid biotinylation // inferred from direct assay 5622 // intracellular // non-traceable author statement /// 5737 // cytoplasm // inferred from direct assay 4077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from mutant phenotype /// 4077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from direct assay /// 4078 // biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity // non-traceable author statement /// 4079 // biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity // non-traceable author statement /// 4080 // biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity // non-traceable author statement 381.010162353516 341.66064453125 446.998962402344 467.729370117188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL141W /GEN=BPL1 /DB_XREF=GI:6320060 /SEG=NC_001136:+203040,205112 /DEF=Biotin:apoprotein ligase, covalently modifies proteins with the addition of biotin, required for acetyl-CoA carboxylase (Acc1p) holoenzyme formation /NOTE=Bpl1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: intracellular [goid GO:0005622] [evidence NAS] [pmid 9847139]; go_function: biotin-[acetyl-CoA-carboxylase] ligase activity [goid GO:0004077] [evidence IDA] [pmid 10551847]; go_function: biotin-[acetyl-CoA-carboxylase] ligase activity [goid GO:0004077] [evidence IMP] [pmid 6108218]; go_function: biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity [goid GO:0004078] [evidence NAS] [pmid 9847139]; go_function: biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity [goid GO:0004079] [evidence NAS] [pmid 9847139]; go_function: biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity [goid GO:0004080] [evidence NAS] [pmid 9847139]; go_process: protein amino acid biotinylation [goid GO:0009305] [evidence IDA] [pmid 10551847] --- --- --- --- --- --- S0002300 // BPL1 SGDID:S0002300, Chr IV from 203040-205112, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023435 // cdna:GeneFinder chromosome:SGD1:IV:203040:205112:1 // ensembl // 11 // --- /// GENSCAN00000024993 // cdna:Genscan chromosome:SGD1:IV:203040:205112:1 // ensembl // 11 // --- /// YDL141W // cdna:known chromosome:SGD1:IV:203040:205112:1 gene:YDL141W // ensembl // 11 // --- --- No cerevisiae_gene 1.06553903618768 -1.11517135043825 1.33535472854858 1.17319433067405 1.22760339836608 Max fold change below threshold 4 1.33535472854858 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775039_at YDR004W.S1 Protein that stimulates strand exchange by stabilizing the binding of Rad51p to single-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; forms heterodimer with Rad55p 1.33503866080606 530.396575927734 682.400512695313 RAD57 707 // meiotic DNA recombinase assembly // traceable author statement /// 722 // telomerase-independent telomere maintenance // inferred from mutant phenotype /// 730 // DNA recombinase assembly // inferred from direct assay /// 730 // DNA recombinase assembly // traceable author statement /// 45002 // double-strand break repair via single-strand annealing // inferred from mutant phenotype /// 45003 // double-strand break repair via synthesis-dependent strand annealing // traceable author statement 5634 // nucleus // inferred from physical interaction 5515 // protein binding // inferred from physical interaction 702.286804199219 526.042297363281 534.750854492188 662.514221191406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR004W /GEN=RAD57 /DB_XREF=GI:6320207 /SEG=NC_001136:+455198,456580 /DEF=Protein that stimulates strand exchange by stabilizing the binding of Rad51p to single-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; forms heterodimer with Rad55p /NOTE=Rad57p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 10943844]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 9159392]; go_process: DNA recombinase assembly [goid GO:0000730] [evidence IDA,TAS] [pmid 11459983]; go_process: double-strand break repair via break-induced replication [goid GO:0000727] [evidence IMP] [pmid 11238940]; go_process: double-strand break repair via single-strand annealing [goid GO:0045002] [evidence IMP] [pmid 8849880]; go_process: double-strand break repair via synthesis-dependent strand annealing [goid GO:0045003] [evidence TAS] [pmid 10357855]; go_process: meiotic DNA recombinase assembly [goid GO:0000707] [evidence TAS] [pmid 11459983]; go_process: telomerase-independent telomere maintenance [goid GO:0000722] [evidence IMP] [pmid 11238918] --- --- --- --- --- --- S0002411 // RAD57 SGDID:S0002411, Chr IV from 455198-456580, Verified ORF // sgd // 11 // --- /// GENSCAN00000025102 // cdna:Genscan chromosome:SGD1:IV:455198:456580:1 // ensembl // 11 // --- /// YDR004W // cdna:known chromosome:SGD1:IV:455198:456580:1 gene:YDR004W // ensembl // 11 // --- --- No cerevisiae_gene -1.10838589197948 -1.33503866080606 -1.00685055511565 -1.31329720803556 -1.06003279889795 Max fold change below threshold 4 1.33503866080606 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776204_at YKL151C.S1 Hypothetical protein 1.33479845095201 5028.70385742188 5197.94213867188 --- --- 5737 // cytoplasm // inferred from direct assay --- 5751.609375 5716.90380859375 4340.50390625 4644.27490234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL151C /GEN=GPM1 /DB_XREF=GI:6322698 /SEG=NC_001143:-164922,165935 /DEF=Hypothetical ORF /NOTE=Ykl151cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001634 // YKL151C SGDID:S0001634, Chr XI from 165935-164922, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018305 // cdna:Genscan chromosome:SGD1:XI:164922:165935:-1 // ensembl // 11 // --- /// GENEFINDER00000023001 // cdna:GeneFinder chromosome:SGD1:XI:164922:165935:-1 // ensembl // 11 // --- /// YKL151C // cdna:known chromosome:SGD1:XI:164922:165935:-1 gene:YKL151C // ensembl // 11 // --- --- No cerevisiae_gene -1.33479845095201 -1.00607069273303 -1.17227338093698 -1.32510176219819 -1.23843000165589 Max fold change below threshold 4 1.33479845095201 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775277_at YKR007W.S1 Component of the EGO complex, which is involved in the regulation of microautophagy; localizes to the vacuolar membrane, loss results in a defect in vacuolar acidification 1.33398144101978 453.200866699219 582.143783569336 MEH1 7035 // vacuolar acidification // inferred from mutant phenotype /// 16237 // microautophagy // inferred from mutant phenotype 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 5774 // vacuolar membrane // inferred from direct assay --- 498.841827392578 472.6103515625 433.791381835938 665.445739746094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR007W /GEN=MRPL13 /DB_XREF=GI:6322859 /SEG=NC_001143:+451077,451631 /DEF=Ykr007wp /NOTE=Mrpl13p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0001715 // MEH1 SGDID:S0001715, Chr XI from 451077-451631, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018423 // cdna:Genscan chromosome:SGD1:XI:451077:451631:1 // ensembl // 11 // --- /// GENEFINDER00000022979 // cdna:GeneFinder chromosome:SGD1:XI:451077:451631:1 // ensembl // 11 // --- /// YKR007W // cdna:known chromosome:SGD1:XI:451077:451631:1 gene:YKR007W // ensembl // 11 // --- --- No cerevisiae_gene -1.18471178453472 -1.05550338824225 1.1321909043586 -1.1499579020711 1.33398144101978 Max fold change below threshold 4 1.33398144101978 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774993_at YGL206C.S1 vesicle coat protein; presumed vesicle coat protein 1.33359574647211 1818.25927734375 1674.16717529297 CHC1 6897 // endocytosis // traceable author statement /// 16192 // vesicle-mediated transport // traceable author statement 30125 // clathrin vesicle coat // traceable author statement 5198 // structural molecule activity // traceable author statement 1764.59680175781 1456.63916015625 2179.87939453125 1583.73754882813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL206C /GEN=CHC1 /DB_XREF=GI:6321232 /SEG=NC_001139:-102545,107506 /DEF=vesicle coat protein /NOTE=Chc1p; go_component: clathrin vesicle coat [goid GO:0030125] [evidence TAS] [pmid 9171338]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9171338]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence TAS] [pmid 9171338] --- --- --- --- --- --- S0003174 // CHC1 SGDID:S0003174, Chr VII from 107508-102547, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019194 // cdna:Genscan chromosome:SGD1:VII:102547:107466:-1 // ensembl // 11 // --- /// GENEFINDER00000021496 // cdna:GeneFinder chromosome:SGD1:VII:102547:107508:-1 // ensembl // 11 // --- /// YGL206C // cdna:known chromosome:SGD1:VII:102547:107508:-1 gene:YGL206C // ensembl // 11 // --- --- No cerevisiae_gene -1.29108194064154 -1.21141656082384 1.33359574647211 1.23534134957048 -1.11419774258905 Max fold change below threshold 4 1.33359574647211 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775915_at YBR234C.S1 Essential subunit of the ARP2/3 complex, which is required for the motility and integrity of cortical actin patches 1.33350640399423 3153.15759277344 3000.4580078125 ARC40 1 // mitochondrion inheritance // traceable author statement /// 7015 // actin filament organization // inferred from mutant phenotype /// 45010 // actin nucleation // inferred from direct assay 5885 // Arp2/3 protein complex // inferred from direct assay 5200 // structural constituent of cytoskeleton // traceable author statement 3000.35327148438 3037.12231445313 3269.19287109375 3000.56274414063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR234C /GEN=ARC40 /DB_XREF=GI:6319711 /SEG=NC_001134:-685395,686549 /DEF=Arp2/3 complex subunit, 40 kilodalton /NOTE=Arc40p; go_component: Arp2/3 protein complex [goid GO:0005885] [evidence IDA] [pmid 10377407]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence TAS] [pmid 10377407]; go_process: actin filament organization [goid GO:0007015] [evidence IMP] [pmid 10377407] --- --- --- --- --- --- S0000438 // ARC40 SGDID:S0000438, Chr II from 686587-685433, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021325 // cdna:Genscan chromosome:SGD1:II:685433:686587:-1 // ensembl // 11 // --- /// GENEFINDER00000022277 // cdna:GeneFinder chromosome:SGD1:II:685433:686587:-1 // ensembl // 11 // --- /// YBR234C // cdna:known chromosome:SGD1:II:685433:686587:-1 gene:YBR234C // ensembl // 11 // --- --- No cerevisiae_gene -1.33350640399423 1.01225490455348 1.08636564362904 1.08960264851624 1.00006981599742 Max fold change below threshold 4 1.33350640399423 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776609_at YKL142W.S1 Putative mitochondrial ribosomal protein, has similarity to E. coli ribosomal protein S2 1.33349798547053 5935.36499023438 4804.46264648438 MRP8 6412 // protein biosynthesis // inferred from sequence similarity 5761 // mitochondrial ribosome // inferred from sequence similarity 3735 // structural constituent of ribosome // inferred from sequence similarity 5311.2685546875 7082.56591796875 4788.1640625 4297.65673828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL142W /GEN=MRP8 /DB_XREF=GI:6322707 /SEG=NC_001143:+178520,179179 /DEF=Putative mitochondrial ribosomal protein, has similarity to E. coli ribosomal protein S2 /NOTE=Mrp8p; go_component: mitochondrial ribosome [goid GO:0005761] [evidence ISS] [pmid 1574929]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence ISS] [pmid 1574929]; go_process: protein biosynthesis [goid GO:0006412] [evidence ISS] [pmid 1574929] --- --- --- --- --- --- S0001625 // MRP8 SGDID:S0001625, Chr XI from 178520-179179, Verified ORF // sgd // 11 // --- /// GENSCAN00000018313 // cdna:Genscan chromosome:SGD1:XI:178520:179179:1 // ensembl // 11 // --- /// GENEFINDER00000022988 // cdna:GeneFinder chromosome:SGD1:XI:178520:179179:1 // ensembl // 11 // --- /// YKL142W // cdna:known chromosome:SGD1:XI:178520:179179:1 gene:YKL142W // ensembl // 11 // --- --- No cerevisiae_gene -1.22695616009941 1.33349798547053 -1.015795263074 -1.10924949215595 -1.23585220461596 Max fold change below threshold 4 1.33349798547053 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779783_at SPAC17A5.14.S1 --- 1.33348924464335 --- --- --- --- 2.97581076622009 2.67689037322998 3.33876824378967 3.5761547088623 0.601073980331421 0.601073980331421 0.5 0.334473013877869 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A5.14 /GEN=exo2 /DEF=exonuclease II (PMID 8781170) --- --- --- --- --- --- SPAC17A5.14 // |exo2||exonuclease II |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.33348924464335 -1.1116670282726 -1.2022056167665 1.12196927361433 1.20174130339772 Max fold change below threshold 4 1.33348924464335 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1778485_at YLR326W.S1 Hypothetical protein 1.33347740253321 387.605972290039 470.530288696289 --- --- --- --- 455.804290771484 355.415588378906 419.796356201172 485.256286621094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR326W /GEN=RPL38 /DB_XREF=GI:6323358 /SEG=NC_001144:+782174,782896 /DEF=Hypothetical ORF /NOTE=Ylr326wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004318 // span:84-106,132-154 // numtm:2 S0004318 // YLR326W SGDID:S0004318, Chr XII from 782174-782896, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000024881 // cdna:GeneFinder chromosome:SGD1:XII:782174:782896:1 // ensembl // 11 // --- /// YLR326W // cdna:known chromosome:SGD1:XII:782174:782896:1 gene:YLR326W // ensembl // 11 // --- --- No cerevisiae_gene -1.33347740253321 -1.28245441583039 -1.13428170488465 -1.08577476683256 1.06461544229818 Max fold change below threshold 4 1.33347740253321 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770027_at YPL206C.S1 Endoplasmic reticulum protein of unknown function 1.33328951572828 4330.92565917969 3850.19616699219 --- --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay --- 4293.81884765625 4813.95068359375 3847.90063476563 3406.57348632813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL206C /GEN=IPL1 /DB_XREF=GI:6325050 /SEG=NC_001148:-162631,163596 /DEF=Endoplasmic reticulum protein of unknown function /NOTE=Ypl206cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 12514182]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006127 // YPL206C SGDID:S0006127, Chr XVI from 163596-162631, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017030 // cdna:Genscan chromosome:SGD1:XVI:162631:163596:-1 // ensembl // 11 // --- /// GENEFINDER00000020724 // cdna:GeneFinder chromosome:SGD1:XVI:162631:163596:-1 // ensembl // 11 // --- /// YPL206C // cdna:known chromosome:SGD1:XVI:162631:163596:-1 gene:YPL206C // ensembl // 11 // --- --- No cerevisiae_gene -1.33328951572828 1.12113502091999 -1.07300577059586 -1.11588610393464 -1.26045096778008 Max fold change below threshold 4 1.33328951572828 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772890_at YNL190W.S1 Hypothetical protein 1.33324988619537 2797.82421875 3172.0048828125 --- 9269 // response to dessication // inferred from expression pattern /// 9269 // response to dessication // inferred from sequence similarity 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 3393.59033203125 2545.35205078125 3050.29638671875 2950.41943359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL190W /GEN=CHS1 /DB_XREF=GI:6324139 /SEG=NC_001146:+282394,283008 /DEF=Hypothetical ORF /NOTE=Ynl190wp; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to dessication [goid GO:0009269] [evidence IEP,ISS] [pmid 10681550] --- --- --- --- --- --- S0005134 // YNL190W SGDID:S0005134, Chr XIV from 282394-283008, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019888 // cdna:Genscan chromosome:SGD1:XIV:282394:283008:1 // ensembl // 11 // --- /// GENEFINDER00000020448 // cdna:GeneFinder chromosome:SGD1:XIV:282394:283008:1 // ensembl // 11 // --- /// YNL190W // cdna:known chromosome:SGD1:XIV:282394:283008:1 gene:YNL190W // ensembl // 11 // --- --- No cerevisiae_gene -1.11044577378764 -1.33324988619537 -1.15522187631493 -1.11254445528875 -1.15020606676851 Max fold change below threshold 4 1.33324988619537 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773052_at YEL029C.S1 Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern; has similarity to pyridoxal kinases 1.333153205514 181.221466064453 232.882835388184 BUD16 282 // bud site selection // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 210.817184448242 195.849792480469 166.593139648438 254.948486328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL029C /GEN=BUD16 /DB_XREF=GI:6320806 /SEG=NC_001137:-96858,97796 /DEF=Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern; has similarity to pyridoxal kinases /NOTE=Bud16p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10077615]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: bud site selection [goid GO:0000282] [evidence IMP] [pmid 11452010] --- --- --- --- --- --- S0000755 // BUD16 SGDID:S0000755, Chr V from 97796-96858, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016779 // cdna:Genscan chromosome:SGD1:V:96858:97796:-1 // ensembl // 11 // --- /// YEL029C // cdna:known chromosome:SGD1:V:96858:97796:-1 gene:YEL029C // ensembl // 11 // --- --- No cerevisiae_gene 1.15660893094767 -1.07642281249425 1.333153205514 -1.26546138030132 1.20933446196706 Max fold change below threshold 4 1.333153205514 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770977_at SPBC609.04.S1 --- 1.33267458308734 --- --- --- --- 5.48486185073853 5.07469654083252 4.81024169921875 7.30953598022461 0.533936023712158 0.533936023712158 0.366210997104645 0.194580003619194 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC609.04 /GEN=caf5 /DEF=MFS multidrug efflux transporter --- --- --- --- --- --- SPBC609.04 // |caf5||MFS multidrug efflux transporter|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.02086724364338 -1.08082558367888 1.20645630301144 -1.14024662245752 1.33267458308734 Max fold change below threshold 4 1.33267458308734 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1771525_at YNL161W.S1 Protein kinase involved in cell wall biosynthesis; required for efficient apical growth, proper mating projection morphology, bipolar bud site selection in diploid cells, and cell separation 1.33244567167119 574.768402099609 742.580169677734 CBK1 749 // response to pheromone during conjugation with cellular fusion // inferred from direct assay /// 753 // cellular morphogenesis during conjugation with cellular fusion // inferred from direct assay /// 903 // cellular morphogenesis during vegetative growth // inferred from genetic interaction /// 7096 // regulation of exit from mitosis // inferred from mutant phenotype /// 30467 // establishment and/or maintenance of cell polarity (sensu Fungi) // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5933 // bud // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 43332 // mating projection tip // traceable author statement 4672 // protein kinase activity // inferred from sequence similarity 714.989013671875 536.598999023438 612.937805175781 770.171325683594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL161W /GEN=CBK1 /DB_XREF=GI:6324168 /SEG=NC_001146:+332597,334867 /DEF=Cell wall biosynthesis kinase; required for efficient apical growth, proper mating projection morphology, bipolar bud site selection in diploid cells, and cell separation. /NOTE=Cbk1p; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 12196508]; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 12196508]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12196508]; go_component: shmoo tip [goid GO:0005937] [evidence TAS] [pmid 12972564]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 10411916]; go_process: cellular morphogenesis during conjugation with cellular fusion [goid GO:0000753] [evidence IDA] [pmid 10411916]; go_process: establishment and/or maintenance of cell polarity (sensu Saccharomyces) [goid GO:0030012] [evidence IMP] [pmid 12196508]; go_process: regulation of exit from mitosis [goid GO:0007096] [evidence IMP] [pmid 12196508]; go_process: response to pheromone during conjugation with cellular fusion [goid GO:0000749] [evidence IDA] [pmid 10411916] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 6.0E-61 /// hanks // 1.9.4 // AGC group; AGC Other; cot-1 // 1.0E-114 scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 1.79999995231628 --- S0005105 // CBK1 SGDID:S0005105, Chr XIV from 332597-334867, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020446 // cdna:GeneFinder chromosome:SGD1:XIV:332597:334867:1 // ensembl // 11 // --- /// GENSCAN00000019910 // cdna:Genscan chromosome:SGD1:XIV:333392:334867:1 // ensembl // 11 // --- /// YNL161W // cdna:known chromosome:SGD1:XIV:332597:334867:1 gene:YNL161W // ensembl // 11 // --- --- No cerevisiae_gene 1.32666030980726 -1.33244567167119 -1.31131667415924 -1.16649520984731 1.07717924465486 Max fold change below threshold 4 1.33244567167119 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770040_at YLL014W.S1 Hypothetical protein 1.33230910378504 1122.35217285156 865.680694580078 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 851.003295898438 1110.90490722656 1133.79943847656 880.358093261719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL014W /GEN=BPT1 /DB_XREF=GI:6323015 /SEG=NC_001144:+121321,121647 /DEF=Hypothetical ORF /NOTE=Yll014wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003937 // span:25-42,49-68,88-107 // numtm:3 S0003937 // YLL014W SGDID:S0003937, Chr XII from 121321-121647, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000024751 // cdna:GeneFinder chromosome:SGD1:XII:117910:121647:1 // ensembl // 11 // --- /// YLL014W // cdna:known chromosome:SGD1:XII:121321:121647:1 gene:YLL014W // ensembl // 11 // --- --- No cerevisiae_gene 1.25322678209415 1.30540611602889 1.15111916239721 1.33230910378504 1.03449434039182 Max fold change below threshold 4 1.33230910378504 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775484_at YCR004C.S1 Protein of unknown function, has sequence and structural similarity to flavodoxins; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.33218353375587 3800.02587890625 2820.14379882813 YCP4 --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 5489 // electron transporter activity // inferred from sequence similarity 2860.26977539063 3810.404296875 3789.6474609375 2780.01782226563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR004C /GEN=YCP4 /DB_XREF=GI:6319849 /SEG=NC_001135:-119572,120315 /DEF=Protein of unknown function, has sequence and structural similarity to flavodoxins; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ycp4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: electron transporter activity [goid GO:0005489] [evidence ISS] [pmid 7756978]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 6.19999980926514 --- S0000597 // YCP4 SGDID:S0000597, Chr III from 120315-119572, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022463 // cdna:Genscan chromosome:SGD1:III:119572:120315:-1 // ensembl // 11 // --- /// GENEFINDER00000023400 // cdna:GeneFinder chromosome:SGD1:III:119572:120315:-1 // ensembl // 11 // --- /// YCR004C // cdna:known chromosome:SGD1:III:119572:120315:-1 gene:YCR004C // ensembl // 11 // --- --- No cerevisiae_gene -1.14818024985297 1.33218353375587 1.21300259097542 1.32492658333949 -1.02886742397198 Max fold change below threshold 4 1.33218353375587 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771959_at YJL041W.S1 Essential component of the nuclear pore complex, which mediates nuclear import and export 1.33187501679907 1266.46826171875 1088.04626464844 NSP1 55 // ribosomal large subunit-nucleus export // inferred from mutant phenotype /// 6405 // RNA-nucleus export // inferred from genetic interaction /// 6405 // RNA-nucleus export // inferred from physical interaction /// 6406 // mRNA-nucleus export // traceable author statement /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6606 // protein-nucleus import // inferred from mutant phenotype /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6999 // nuclear pore organization and biogenesis // inferred from mutant phenotype /// 6999 // nuclear pore organization and biogenesis // inferred from genetic interaction /// 6999 // nuclear pore organization and biogenesis // inferred from physical interaction 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement 1035.47509765625 1153.81311035156 1379.12341308594 1140.61743164063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL041W /GEN=NSP1 /DB_XREF=GI:6322420 /SEG=NC_001142:+365700,368289 /DEF=Essential component of the nuclear pore complex, which mediates nuclear import and export /NOTE=Nsp1p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: RNA-nucleus export [goid GO:0006405] [evidence IGI,IPI] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence TAS] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence IGI,IMP,IPI] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus import [goid GO:0006606] [evidence IMP] [pmid 9442897]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal large subunit-nucleus export [goid GO:0000055] [evidence IMP] [pmid 9971735]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0003577 // NSP1 SGDID:S0003577, Chr X from 365700-365700,365819-368289, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000024108 // cdna:Genscan chromosome:SGD1:X:355940:368289:1 // ensembl // 11 // --- /// GENEFINDER00000024537 // cdna:GeneFinder chromosome:SGD1:X:361165:368289:1 // ensembl // 11 // --- /// YJL041W // cdna:known chromosome:SGD1:X:365700:368289:1 gene:YJL041W // ensembl // 11 // --- --- No cerevisiae_gene 1.20400591232983 1.1142837842872 1.1513237903608 1.33187501679907 1.10154018597102 Max fold change below threshold 4 1.33187501679907 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779571_at YGR049W.S1 Potential regulatory effector of CDC4 function, suppresses a temperature-sensitive allele of CDC4, tripartite protein structure in which a charged region separates two uncharged domains, not essential for mitosis or meiosis 1.33171331289107 4452.70239257813 3660.708984375 SCM4 7049 // cell cycle // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay --- 3801.91479492188 5063.060546875 3842.34423828125 3519.50317382813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR049W /GEN=SCM4 /DB_XREF=GI:6321486 /SEG=NC_001139:+591316,591879 /DEF=Protein that suppresses ts allele of CDC4 when overexpressed /NOTE=Scm4p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell cycle [goid GO:0007049] [evidence IGI] [pmid 1465103] --- --- --- --- --- S0003281 // span:10-32,45-67,77-99,163-185 // numtm:4 S0003281 // SCM4 SGDID:S0003281, Chr VII from 591318-591881, Verified ORF // sgd // 10 // --- /// GENEFINDER00000021681 // cdna:GeneFinder chromosome:SGD1:VII:591318:591881:1 // ensembl // 10 // --- /// YGR049W // cdna:known chromosome:SGD1:VII:591318:591881:1 gene:YGR049W // ensembl // 10 // --- --- No cerevisiae_gene 1.04617199533824 1.33171331289107 1.00078425993584 1.01063396881313 -1.08024189982093 Max fold change below threshold 4 1.33171331289107 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770685_at YGR198W.S1 Essential protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.3315527541301 1355.19317626953 1541.62884521484 --- 165 // MAPKKK cascade // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 16740 // transferase activity // inferred from sequence similarity 1508.66357421875 1470.36791992188 1240.01843261719 1574.59411621094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR198W /GEN=SNG1 /DB_XREF=GI:6321637 /SEG=NC_001139:+894696,897149 /DEF=Essential protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ygr198wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 14690591]; go_function: transferase activity [goid GO:0016740] [evidence ISS] [pmid 14690591]; go_process: MAPKKK cascade [goid GO:0000165] [evidence IPI] [pmid 14690591] --- --- --- --- --- --- S0003430 // YGR198W SGDID:S0003430, Chr VII from 894698-897151, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019495 // cdna:Genscan chromosome:SGD1:VII:894698:897151:1 // ensembl // 11 // --- /// GENEFINDER00000021675 // cdna:GeneFinder chromosome:SGD1:VII:894698:897151:1 // ensembl // 11 // --- /// YGR198W // cdna:known chromosome:SGD1:VII:894698:897151:1 gene:YGR198W // ensembl // 11 // --- --- No cerevisiae_gene -1.3315527541301 -1.02604494683134 1.07026215448987 -1.2166460872961 1.04370128842431 Max fold change below threshold 4 1.3315527541301 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774181_at YGR002C.S1 Protein of unknown function, component of the Swr1p complex that incorporates Htz1p into chromatin; component of the NuA4 histone acetyltransferase complex 1.330981134236 773.368103027344 798.112243652344 SWC4 6338 // chromatin remodeling // inferred from direct assay /// 6338 // chromatin remodeling // inferred from physical interaction /// 16568 // chromatin modification // inferred from physical interaction /// 16573 // histone acetylation // inferred from physical interaction 123 // histone acetyltransferase complex // inferred from physical interaction /// 812 // SWR1 complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay /// 43189 // H4/H2A histone acetyltransferase complex // inferred from physical interaction 3677 // DNA binding // inferred from sequence similarity 752.625366210938 669.787292480469 876.948913574219 843.59912109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR002C /GEN=SWC4 /DB_XREF=GI:6321439 /SEG=NC_001139:-498478,499908 /DEF=Protein of unknown function, component of the Swr1p complex that incorporates Htz1p into chromatin; component of the NuA4 histone acetyltransferase complex /NOTE=Swc4p; go_component: SWR1 complex [goid GO:0000812] [evidence IPI] [pmid 14690608]; go_component: histone acetyltransferase complex [goid GO:0000123] [evidence IPI] [pmid 12672825]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14690591]; go_function: DNA binding [goid GO:0003677] [evidence ISS] [pmid 14690591]; go_process: chromatin modification [goid GO:0016568] [evidence IPI] [pmid 12672825]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 14645854]; go_process: chromatin remodeling [goid GO:0006338] [evidence IPI] [pmid 14690608]; go_process: histone acetylation [goid GO:0016573] [evidence IPI] [pmid 14690591] --- --- --- --- --- --- S0003234 // SWC4 SGDID:S0003234, Chr VII from 499910-498480, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021613 // cdna:GeneFinder chromosome:SGD1:VII:497425:499910:-1 // ensembl // 11 // --- /// GENSCAN00000019341 // cdna:Genscan chromosome:SGD1:VII:498480:499910:-1 // ensembl // 11 // --- /// YGR002C // cdna:known chromosome:SGD1:VII:498480:499910:-1 gene:YGR002C // ensembl // 11 // --- --- No cerevisiae_gene 1.330981134236 -1.12367818061117 1.13510510976632 1.16518649642276 1.12087521756118 Max fold change below threshold 4 1.330981134236 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772999_at YMR205C.S1 Beta subunit of heterooctameric phosphofructokinase involved in glycolysis, indispensable for anaerobic growth, activated by fructose-2,6-bisphosphate and AMP, mutation inhibits glucose induction of cell cycle-related genes 1.33054556220106 3892.76245117188 4504.41235351563 PFK2 6096 // glycolysis // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5945 // 6-phosphofructokinase complex // inferred from mutant phenotype 3872 // 6-phosphofructokinase activity // inferred from mutant phenotype 4918.91357421875 3762.19189453125 4023.3330078125 4089.9111328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR205C /GEN=PFK2 /DB_XREF=GI:6323861 /SEG=NC_001145:-671886,674765 /DEF=phosphofructokinase beta subunit /NOTE=Pfk2p; go_component: 6-phosphofructokinase complex [goid GO:0005945] [evidence IMP] [pmid 3007939]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: 6-phosphofructokinase activity [goid GO:0003872] [evidence IMP] [pmid 3007939]; go_process: glycolysis [goid GO:0006096] [evidence TAS] --- --- --- --- --- --- S0004818 // PFK2 SGDID:S0004818, Chr XIII from 674765-671886, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018886 // cdna:Genscan chromosome:SGD1:XIII:671886:674765:-1 // ensembl // 11 // --- /// GENEFINDER00000021878 // cdna:GeneFinder chromosome:SGD1:XIII:671886:674765:-1 // ensembl // 11 // --- /// YMR205C // cdna:known chromosome:SGD1:XIII:671886:674765:-1 gene:YMR205C // ensembl // 11 // --- --- No cerevisiae_gene 1.10329330097921 -1.3074595108689 -1.33054556220106 -1.22259667908851 -1.20269448760276 Max fold change below threshold 4 1.33054556220106 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770026_at YBL017C.S1 Type I transmembrane sorting receptor for multiple vacuolar hydrolases; cycles between the late-Golgi and prevacuolar endosome-like compartments 1.33026753228838 1829.08819580078 1441.59655761719 PEP1 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 6623 // protein-vacuolar targeting // inferred from physical interaction /// 7034 // vacuolar transport // inferred from mutant phenotype /// 7034 // vacuolar transport // inferred from physical interaction 5794 // Golgi apparatus // traceable author statement 5048 // signal sequence binding // inferred from mutant phenotype /// 5048 // signal sequence binding // inferred from physical interaction 1415.8447265625 1774.72412109375 1883.45227050781 1467.34838867188 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL017C /GEN=PEP1 /DB_XREF=GI:6319454 /SEG=NC_001134:-186809,191548 /DEF=vacuolar protein sorting receptor for carboxypeptidase Y and proteinase A; related to Sortilin /NOTE=Pep1p; go_component: Golgi apparatus [goid GO:0005794] [evidence TAS] [pmid 8187177]; go_function: signal sequence binding [goid GO:0005048] [evidence IMP,IPI] [pmid 8187177]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP,IPI] [pmid 8187177]; go_process: vacuolar transport [goid GO:0007034] [evidence IMP,IPI] [pmid 8187177] --- --- --- --- --- S0000113 // span:1393-1415 // numtm:1 S0000113 // PEP1 SGDID:S0000113, Chr II from 191586-186847, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000021124 // cdna:Genscan chromosome:SGD1:II:186847:191586:-1 // ensembl // 10 // --- /// GENEFINDER00000022216 // cdna:GeneFinder chromosome:SGD1:II:186847:191304:-1 // ensembl // 10 // --- /// YBL017C // cdna:known chromosome:SGD1:II:186847:191586:-1 gene:YBL017C // ensembl // 10 // --- --- No cerevisiae_gene -1.20305084882889 1.25347369510113 -1.05193027109701 1.33026753228838 1.03637663166244 Max fold change below threshold 4 1.33026753228838 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776210_at YGR106C.S1 Hypothetical protein 1.32981841644793 2468.86242675781 2829.74597167969 --- --- 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay --- 2975.76025390625 2700.00561523438 2237.71923828125 2683.73168945313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR106C /GEN=VMA21 /DB_XREF=GI:6321543 /SEG=NC_001139:-698991,699788 /DEF=Hypothetical ORF /NOTE=Ygr106cp; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003338 // span:223-245 // numtm:1 S0003338 // YGR106C SGDID:S0003338, Chr VII from 699790-698993, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019421 // cdna:Genscan chromosome:SGD1:VII:698993:699790:-1 // ensembl // 11 // --- /// YGR106C // cdna:known chromosome:SGD1:VII:698993:699790:-1 gene:YGR106C // ensembl // 11 // --- --- No cerevisiae_gene 1.00526388591938 -1.10213113525245 -1.06764568747826 -1.32981841644793 -1.10881436680156 Max fold change below threshold 4 1.32981841644793 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774689_at YER161C.S1 Protein involved in negative regulation of transcription, exhibits regulated interactions with both histones and SWI-SNF components, has similarity to mammalian HMG1 proteins 1.32970698357742 232.504379272461 250.438850402832 SPT2 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 3677 // DNA binding // inferred from direct assay 244.723220825195 184.04296875 280.965789794922 256.154479980469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER161C /GEN=SPT2 /DB_XREF=GI:6321009 /SEG=NC_001137:-499342,500343 /DEF=Protein involved in negative regulation of transcription, exhibits regulated interactions with both histones and SWI-SNF components, has similarity to mammalian HMG1 proteins /NOTE=Spt2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 2072912]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 2072912]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IMP] [pmid 2072912] --- --- --- --- --- --- S0000963 // SPT2 SGDID:S0000963, Chr V from 500343-499342, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016940 // cdna:Genscan chromosome:SGD1:V:499342:500343:-1 // ensembl // 11 // --- /// GENEFINDER00000019606 // cdna:GeneFinder chromosome:SGD1:V:499342:500343:-1 // ensembl // 11 // --- /// YER161C // cdna:known chromosome:SGD1:V:499342:500343:-1 gene:YER161C // ensembl // 11 // --- --- No cerevisiae_gene -1.16063329424074 -1.32970698357742 1.16283511203671 1.14809615878509 1.04671097052714 Max fold change below threshold 4 1.32970698357742 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778108_at SPBC19C7.06.S1 --- 1.32948591197008 --- --- --- --- 10.1534824371338 13.498911857605 13.1355266571045 11.5020446777344 0.030273400247097 0.00415039015933871 0.000244141003349796 0.00805663969367743 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19C7.06 /DEF=proline-tRNA ligase (predicted) --- --- --- --- --- --- SPBC19C7.06 // |||proline-tRNA ligase |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.28559483888808 1.32948591197008 1.24988254574329 1.2936966935664 1.13281770554589 Max fold change below threshold 4 1.32948591197008 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1772985_at YBR239C.S1 Hypothetical protein 1.32936290875712 482.340606689453 485.114151000977 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 445.151336669922 408.348388671875 556.332824707031 525.076965332031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR239C /GEN=PRP5 /DB_XREF=GI:6319716 /SEG=NC_001134:-698311,699900 /DEF=Hypothetical ORF /NOTE=Ybr239cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000443 // YBR239C SGDID:S0000443, Chr II from 699938-698349, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021330 // cdna:Genscan chromosome:SGD1:II:698349:699674:-1 // ensembl // 11 // --- /// GENEFINDER00000022282 // cdna:GeneFinder chromosome:SGD1:II:698349:699938:-1 // ensembl // 11 // --- /// YBR239C // cdna:known chromosome:SGD1:II:698349:699938:-1 gene:YBR239C // ensembl // 11 // --- --- No cerevisiae_gene -1.32936290875712 -1.09012634558874 1.12372953780765 1.24976110117704 1.17954709348963 Max fold change below threshold 4 1.32936290875712 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778566_at YKL003C.S1 Mitochondrial ribosomal protein of the small subunit; MRP17 exhibits genetic interactions with PET122, encoding a COX3-specific translational activator 1.32903263849783 1112.12713623047 1130.49694824219 MRP17 6412 // protein biosynthesis // traceable author statement 5763 // mitochondrial small ribosomal subunit // traceable author statement /// 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // traceable author statement 1061.98205566406 1160.42932128906 1063.82495117188 1199.01184082031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL003C /GEN=MRP17 /DB_XREF=GI:6322850 /SEG=NC_001143:-436740,437135 /DEF=Mitochondrial ribosomal protein of the small subunit; MRP17 exhibits genetic interactions with PET122, encoding a COX3-specific translational activator /NOTE=Mrp17p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 12392552]; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0001486 // MRP17 SGDID:S0001486, Chr XI from 437135-436740, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018415 // cdna:Genscan chromosome:SGD1:XI:436740:437135:-1 // ensembl // 11 // --- /// YKL003C // cdna:known chromosome:SGD1:XI:436740:437135:-1 gene:YKL003C // ensembl // 11 // --- --- No cerevisiae_gene -1.0131596814537 1.09270143982182 1.32903263849783 1.00173533582605 1.12903210974743 Max fold change below threshold 4 1.32903263849783 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770706_at YAL042W.S1 Protein localized to COPII-coated vesicles, forms a complex with Erv41p; involved in the membrane fusion stage of transport 1.32874526182644 1666.46337890625 2042.69104003906 ERV46 6888 // ER to Golgi transport // inferred from physical interaction 30138 // COPII-coated vesicle // inferred from direct assay /// 30173 // integral to Golgi membrane // inferred from direct assay /// 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay --- 1974.79736328125 1486.21215820313 1846.71459960938 2110.58471679688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL042W /GEN=ERV46 /DB_XREF=GI:6319274 /SEG=NC_001133:+61319,62566 /DEF=Protein localized to COPII-coated vesicles, forms a complex with Erv41p; involved in the membrane fusion stage of transport /NOTE=Erv46p; go_component: COPII-coated vesicle [goid GO:0030138] [evidence IDA] [pmid 11157978]; go_component: integral to Golgi membrane [goid GO:0030173] [evidence IDA] [pmid 11157978]; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA] [pmid 11157978]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IPI] [pmid 11157978] --- --- --- --- --- S0000040 // span:376-398 // numtm:1 S0000040 // ERV46 SGDID:S0000040, Chr I from 61317-62564, Verified ORF // sgd // 10 // --- /// GENEFINDER00000018214 // cdna:GeneFinder chromosome:SGD1:I:61317:62564:1 // ensembl // 10 // --- /// GENSCAN00000020340 // cdna:Genscan chromosome:SGD1:I:61317:62564:1 // ensembl // 10 // --- /// YAL042W // cdna:known chromosome:SGD1:I:61317:62564:1 gene:YAL042W // ensembl // 10 // --- --- No cerevisiae_gene 1.09922905460286 -1.32874526182644 -1.10147075514715 -1.06935709703003 1.0687601452384 Max fold change below threshold 4 1.32874526182644 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777465_at YIL031W.S1 Peptidase that deconjugates Smt3/SUMO-1 peptides from proteins, plays a role in chromosome cohesion at centromeric regions and recovery from checkpoint arrest induced by DNA damage or DNA replication defects; potential Cdc28p substrate 1.32822213090835 514.471588134766 632.014312744141 ULP2 6276 // plasmid maintenance // inferred from mutant phenotype /// 7094 // mitotic spindle checkpoint // inferred from mutant phenotype /// 7094 // mitotic spindle checkpoint // inferred from genetic interaction /// 16926 // protein desumoylation // inferred from mutant phenotype /// 16926 // protein desumoylation // inferred from direct assay /// 30261 // chromosome condensation // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 8234 // cysteine-type peptidase activity // inferred from direct assay /// 8234 // cysteine-type peptidase activity // inferred from sequence similarity /// 16929 // SUMO-specific protease activity // inferred from mutant phenotype /// 16929 // SUMO-specific protease activity // inferred from direct assay 603.110534667969 524.833312988281 504.10986328125 660.918090820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL031W /GEN=ULP2 /DB_XREF=GI:6322158 /SEG=NC_001141:+292632,295736 /DEF=Peptidase that deconjugates Smt3/SUMO-1 peptides from proteins, plays a role in chromosome cohesion at centromeric regions and recovery from checkpoint arrest induced by DNA damage or DNA replication defects; potential Cdc28p substrate /NOTE=Ulp2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10713161]; go_function: SUMO-specific protease activity [goid GO:0016929] [evidence IDA,IMP] [pmid 10713161]; go_function: cysteine-type peptidase activity [goid GO:0008234] [evidence ISS] [pmid 10094048]; go_function: cysteine-type peptidase activity [goid GO:0008234] [evidence IDA] [pmid 10713161]; go_process: chromosome condensation [goid GO:0030261] [evidence IMP] [pmid 11333221]; go_process: mitotic spindle checkpoint [goid GO:0007094] [evidence IGI,IMP] [pmid 10713162]; go_process: plasmid maintenance [goid GO:0006276] [evidence IMP] [pmid 11333221]; go_process: protein desumoylation [goid GO:0016926] [evidence IDA,IMP] [pmid 10713161] --- --- --- --- --- --- S0001293 // ULP2 SGDID:S0001293, Chr IX from 292632-295736, Verified ORF // sgd // 11 // --- /// GENSCAN00000016453 // cdna:Genscan chromosome:SGD1:IX:292632:295736:1 // ensembl // 11 // --- /// GENEFINDER00000018998 // cdna:GeneFinder chromosome:SGD1:IX:293538:295736:1 // ensembl // 11 // --- /// YIL031W // cdna:known chromosome:SGD1:IX:292632:295736:1 gene:YIL031W // ensembl // 11 // --- YIL030W-A // ensembl // 3 // Cross Hyb Matching Probes No cerevisiae_gene 1.05319185217667 -1.14914682384393 -1.32822213090835 -1.19638709455579 1.09584902406682 Max fold change below threshold 4 1.32822213090835 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771296_at YLR091W.S1 Hypothetical protein 1.32789663189453 90.2692070007324 109.429023742676 --- --- 5739 // mitochondrion // inferred from direct assay --- 101.612968444824 93.0829238891602 87.4554901123047 117.245079040527 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR091W /GEN=XDJ1 /DB_XREF=GI:6323120 /SEG=NC_001144:+322298,323179 /DEF=Hypothetical ORF /NOTE=Ylr091wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004081 // YLR091W SGDID:S0004081, Chr XII from 322298-323179, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017890 // cdna:Genscan chromosome:SGD1:XII:322298:323179:1 // ensembl // 11 // --- /// YLR091W // cdna:known chromosome:SGD1:XII:322298:323179:1 gene:YLR091W // ensembl // 11 // --- --- No cerevisiae_gene 1.32789663189453 -1.09163919867645 -1.17740878066996 -1.16188209927518 1.15383971982072 Max fold change below threshold 4 1.32789663189453 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778425_at YGR132C.S1 Subunit of the prohibitin complex (Phb1p-Phb2p), a 1.2 MDa ring-shaped inner mitochondrial membrane chaperone that stabilizes newly synthesized proteins; determinant of replicative life span; involved in mitochondrial segregation 1.32785944361799 3738.08972167969 2890.77209472656 PHB1 1302 // replicative cell aging // inferred from mutant phenotype /// 6457 // protein folding // inferred from direct assay /// 6457 // protein folding // inferred from physical interaction /// 6457 // protein folding // inferred from sequence similarity /// 45861 // negative regulation of proteolysis and peptidolysis // inferred from mutant phenotype /// 45861 // negative regulation of proteolysis and peptidolysis // inferred from physical interaction 5739 // mitochondrion // inferred from direct assay /// 5743 // mitochondrial inner membrane // inferred from direct assay --- 3066.96875 3403.67602539063 4072.50341796875 2714.57543945313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR132C /GEN=PHB1 /DB_XREF=GI:6321571 /SEG=NC_001139:-755592,756455 /DEF=antiproliferative protein involved in determination of replicative life span /NOTE=Phb1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence TAS] [pmid 12589040]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 9259555]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence IMP,IPI] [pmid 10207067]; go_process: replicative cell aging [goid GO:0001302] [evidence IMP] [pmid 12882345] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 2.20000004768372 --- S0003364 // PHB1 SGDID:S0003364, Chr VII from 756457-755594, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019442 // cdna:Genscan chromosome:SGD1:VII:755594:756457:-1 // ensembl // 11 // --- /// GENEFINDER00000021761 // cdna:GeneFinder chromosome:SGD1:VII:755594:756457:-1 // ensembl // 11 // --- /// YGR132C // cdna:known chromosome:SGD1:VII:755594:756457:-1 gene:YGR132C // ensembl // 11 // --- --- No cerevisiae_gene -1.04431159069696 1.10978503624813 1.14818205322845 1.32785944361799 -1.12981525782089 Max fold change below threshold 4 1.32785944361799 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775713_at YNL103W.S1 Lecine-zipper transcriptional activator, responsible for the regulation of the sulfur amino acid pathway, requires different combinations of the auxiliary factors Cbf1p, Met28p, Met31p and Met32p 1.32777054114256 1354.97045898438 1557.25970458984 MET4 96 // sulfur amino acid metabolism // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 46685 // response to arsenic // inferred from direct assay /// 46686 // response to cadmium ion // inferred from direct assay 5634 // nucleus // inferred from physical interaction 3713 // transcription coactivator activity // inferred from direct assay 1519.41052246094 1358.9267578125 1351.01416015625 1595.10888671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL103W /GEN=MET4 /DB_XREF=GI:6324226 /SEG=NC_001146:+427735,429753 /DEF=Lecine-zipper transcriptional activator, responsible for the regulation of the sulfur amino acid pathway, requires different combinations of the auxiliary factors Cbf1p, Met28p, Met31p and Met32p /NOTE=Met4p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 9799240]; go_function: transcription coactivator activity [goid GO:0003713] [evidence IDA] [pmid 9799240]; go_process: positive regulation of transcription from Pol II promoter [goid GO:0045944] [evidence IDA] [pmid 9799240]; go_process: sulfur amino acid metabolism [goid GO:0000096] [evidence IMP] [pmid 1549123] --- --- --- --- --- --- S0005047 // MET4 SGDID:S0005047, Chr XIV from 427735-429753, Verified ORF // sgd // 11 // --- /// GENSCAN00000019950 // cdna:Genscan chromosome:SGD1:XIV:427735:429753:1 // ensembl // 11 // --- /// GENEFINDER00000020486 // cdna:GeneFinder chromosome:SGD1:XIV:427735:429753:1 // ensembl // 11 // --- /// YNL103W // cdna:known chromosome:SGD1:XIV:427735:429753:1 gene:YNL103W // ensembl // 11 // --- --- No cerevisiae_gene -1.32777054114256 -1.11809596339598 -1.19755572617206 -1.12464440956356 1.04982087667473 Max fold change below threshold 4 1.32777054114256 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769708_at YIL161W.S1 Hypothetical protein 1.32741195351767 341.511001586914 443.071090698242 --- --- 5737 // cytoplasm // inferred from direct assay --- 404.589111328125 378.2265625 304.795440673828 481.553070068359 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL161W /GEN=SUC2 /DB_XREF=GI:6322030 /SEG=NC_001141:+39433,40140 /DEF=Hypothetical ORF /NOTE=Yil161wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 1.89999997615814 --- S0001423 // YIL161W SGDID:S0001423, Chr IX from 39433-40140, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018994 // cdna:GeneFinder chromosome:SGD1:IX:39433:40140:1 // ensembl // 11 // --- /// YIL161W // cdna:known chromosome:SGD1:IX:39433:40140:1 gene:YIL161W // ensembl // 11 // --- --- No cerevisiae_gene 1.16319514215872 -1.06970041621052 1.14341709223466 -1.32741195351767 1.1902274593787 Max fold change below threshold 4 1.32741195351767 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775031_at YIL109C.S1 Component of the Sec23p-Sec24p heterodimeric complex of the COPII vesicle coat; involved in ER to Golgi transport, cargo selection and autophagy; required for the binding of the Sec13 complex to ER membranes; homologous to Lst1p and Lss1p 1.32735136069442 1844.88806152344 1837.79479980469 SEC24 6888 // ER to Golgi transport // traceable author statement /// 6914 // autophagy // inferred from mutant phenotype 30127 // COPII vesicle coat // traceable author statement 5515 // protein binding // inferred from direct assay 1811.09704589844 1742.78369140625 1946.99243164063 1864.49255371094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL109C /GEN=SEC24 /DB_XREF=GI:6322082 /SEG=NC_001141:-157382,160162 /DEF=The Sec23p-Sec24p complex is one of three cytoplamic COPII factors involved in ER to Golgi transport /NOTE=Sec24p; go_component: COPII vesicle coat [goid GO:0030127] [evidence TAS] [pmid 11252894]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 11086000]; go_process: ER to Golgi transport [goid GO:0006888] [evidence TAS] [pmid 11252894]; go_process: autophagy [goid GO:0006914] [evidence IMP] [pmid 11694599] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 6.19999980926514 --- S0001371 // SEC24 SGDID:S0001371, Chr IX from 160162-157382, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016395 // cdna:Genscan chromosome:SGD1:IX:157382:160162:-1 // ensembl // 11 // --- /// GENEFINDER00000019088 // cdna:GeneFinder chromosome:SGD1:IX:157382:160162:-1 // ensembl // 11 // --- /// YIL109C // cdna:known chromosome:SGD1:IX:157382:160162:-1 gene:YIL109C // ensembl // 11 // --- --- No cerevisiae_gene -1.06625181813942 -1.03919783896822 -1.32735136069442 1.07503484479197 1.02948241119018 Max fold change below threshold 4 1.32735136069442 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778879_at YGL086W.S1 Coiled-coil protein involved in the spindle-assembly checkpoint; phosphorylated by Mps1p upon checkpoint activation which leads to inhibition of the activity of the anaphase promoting complex; forms a complex with Mad2p 1.32703017010968 391.152084350586 456.195251464844 MAD1 6913 // nucleocytoplasmic transport // inferred from genetic interaction /// 6913 // nucleocytoplasmic transport // inferred from physical interaction /// 7094 // mitotic spindle checkpoint // inferred from mutant phenotype /// 7094 // mitotic spindle checkpoint // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5643 // nuclear pore // inferred from direct assay --- 427.285247802734 460.318084716797 321.986083984375 485.105255126953 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL086W /GEN=MAD1 /DB_XREF=GI:6321352 /SEG=NC_001139:+347120,349369 /DEF=coiled-coil protein involved in spindle-assembly checkpoint /NOTE=Mad1p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 12473689]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 7593191]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitotic spindle checkpoint [goid GO:0007094] [evidence IGI,IMP] [pmid 10704439]; go_process: nucleocytoplasmic transport [goid GO:0006913] [evidence IGI,IPI] [pmid 12473689] --- --- --- --- --- --- S0003054 // MAD1 SGDID:S0003054, Chr VII from 347122-349371, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021498 // cdna:GeneFinder chromosome:SGD1:VII:347122:349371:1 // ensembl // 11 // --- /// GENSCAN00000019286 // cdna:Genscan chromosome:SGD1:VII:348298:349371:1 // ensembl // 11 // --- /// YGL086W // cdna:known chromosome:SGD1:VII:347122:349371:1 gene:YGL086W // ensembl // 11 // --- --- No cerevisiae_gene 1.13200618829003 1.07730862950202 1.13348041033097 -1.32703017010968 1.13531945608127 Max fold change below threshold 4 1.32703017010968 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775683_at YML120C.S1 NADH:ubiquinone oxidoreductase, transfers electrons from NADH to ubiquinone in the respiratory chain but does not pump protons, in contrast to the higher eukaryotic multisubunit respiratory complex I which is absent in S. cerevisiae 1.32658384010703 2749.9228515625 2184.03771972656 NDI1 6120 // mitochondrial electron transport, NADH to ubiquinone // inferred from direct assay 5743 // mitochondrial inner membrane // inferred from direct assay 16655 // oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor // inferred from direct assay 2202.18115234375 2921.3779296875 2578.4677734375 2165.89428710938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML120C /GEN=NDI1 /DB_XREF=GI:6323515 /SEG=NC_001145:-28266,29807 /DEF=NADH:ubiquinone oxidoreductase, transfers electrons from NADH to ubiquinone in the respiratory chain but does not pump protons, in contrast to the higher eukaryotic multisubunit respiratory complex I which is absent in S. cerevisiae /NOTE=Ndi1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 3138118]; go_function: oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor [goid GO:0016655] [evidence IDA] [pmid 11370674]; go_process: mitochondrial electron transport, NADH to ubiquinone [goid GO:0006120] [evidence IDA] [pmid 1900238] --- --- --- --- --- S0004589 // span:465-487 // numtm:1 S0004589 // NDI1 SGDID:S0004589, Chr XIII from 29807-28266, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018615 // cdna:Genscan chromosome:SGD1:XIII:28266:29807:-1 // ensembl // 11 // --- /// GENEFINDER00000021965 // cdna:GeneFinder chromosome:SGD1:XIII:28266:29681:-1 // ensembl // 11 // --- /// YML120C // cdna:known chromosome:SGD1:XIII:28266:29807:-1 gene:YML120C // ensembl // 11 // --- --- No cerevisiae_gene 1.22904759508007 1.32658384010703 1.20974023224045 1.17086996712022 -1.01675375638153 Max fold change below threshold 4 1.32658384010703 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771800_at YPL260W.S1 Hypothetical protein 1.32658179708955 2802.31103515625 2562.47607421875 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 2600.86401367188 3002.69897460938 2601.92309570313 2524.08813476563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL260W /GEN=FUM1 /DB_XREF=GI:6324994 /SEG=NC_001148:+49303,50958 /DEF=Hypothetical ORF /NOTE=Ypl260wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006181 // YPL260W SGDID:S0006181, Chr XVI from 49303-50958, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016984 // cdna:Genscan chromosome:SGD1:XVI:49303:50958:1 // ensembl // 11 // --- /// YPL260W // cdna:known chromosome:SGD1:XVI:49303:50958:1 gene:YPL260W // ensembl // 11 // --- --- No cerevisiae_gene -1.32658179708955 1.15450056551407 -1.07215208600454 1.00040720392365 -1.03041727341006 Max fold change below threshold 4 1.32658179708955 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774948_at YGR037C.S1 Acyl-CoA-binding protein, transports newly synthesized acyl-CoA esters from fatty acid synthetase (Fas1p-Fas2p) to acyl-CoA-consuming processes 1.32648746876023 2823.11535644531 2776.39514160156 ACB1 6631 // fatty acid metabolism // inferred from mutant phenotype /// 6631 // fatty acid metabolism // inferred from direct assay /// 15909 // long-chain fatty acid transport // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 62 // acyl-CoA binding // inferred from sequence similarity /// 5324 // long-chain fatty acid transporter activity // inferred from mutant phenotype 2786.53564453125 3155.97729492188 2490.25341796875 2766.25463867188 0.000732421991415322 0.00122069998178631 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR037C /GEN=ACB1 /DB_XREF=GI:6321474 /SEG=NC_001139:-559733,559996 /DEF=Acyl-CoA-binding protein, transports newly synthesized acyl-CoA esters from fatty acid synthetase (Fas1p-Fas2p) to acyl-CoA-consuming processes /NOTE=Acb1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: acyl-CoA binding [goid GO:0000062] [evidence ISS] [pmid 1454809]; go_function: long-chain fatty acid transporter activity [goid GO:0005324] [evidence IMP] [pmid 11294913]; go_process: fatty acid metabolism [goid GO:0006631] [evidence IDA,IMP] [pmid 8798418]; go_process: long-chain fatty acid transport [goid GO:0015909] [evidence IMP] [pmid 11294913] --- --- --- --- --- --- S0003269 // ACB1 SGDID:S0003269, Chr VII from 559998-559735, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019367 // cdna:Genscan chromosome:SGD1:VII:559735:559998:-1 // ensembl // 11 // --- /// GENEFINDER00000021624 // cdna:GeneFinder chromosome:SGD1:VII:559735:559998:-1 // ensembl // 11 // --- /// YGR037C // cdna:known chromosome:SGD1:VII:559735:559998:-1 gene:YGR037C // ensembl // 11 // --- --- No cerevisiae_gene 1.11849539805408 1.13258098855318 -1.32648746876023 -1.11897673723672 -1.00733157590623 Max fold change below threshold 4 1.32648746876023 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777756_at YDL072C.S1 Endoplasmic reticulum transmembrane protein, homolog of human BAP31 protein 1.32647919424422 3979.50048828125 4168.28967285156 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 4656.64990234375 4381.7607421875 3577.240234375 3679.92944335938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL072C /GEN=BRE1 /DB_XREF=GI:6320131 /SEG=NC_001136:-329836,330447 /DEF=Endoplasmic reticulum transmembrane protein, homolog of human BAP31 protein /NOTE=Ydl072cp --- --- --- --- --- S0002230 // span:7-26,46-63,106-128 // numtm:3 S0002230 // YET3 SGDID:S0002230, Chr IV from 330447-329836, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025048 // cdna:Genscan chromosome:SGD1:IV:329836:330447:-1 // ensembl // 11 // --- /// YDL072C // cdna:known chromosome:SGD1:IV:329836:330447:-1 gene:YDL072C // ensembl // 11 // --- GENEFINDER00000023867 // ensembl // 2 // Cross Hyb Matching Probes No cerevisiae_gene -1.32647919424422 -1.06273486306763 -1.13736375854038 -1.30174368989712 -1.26541825706656 Max fold change below threshold 4 1.32647919424422 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777748_at YPL225W.S1 Hypothetical protein 1.32636181899088 1825.13385009766 1720.58953857422 --- --- 5737 // cytoplasm // inferred from direct assay --- 1828.36596679688 2066.697265625 1583.57043457031 1612.81311035156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL225W /GEN=NEW1 /DB_XREF=GI:6325031 /SEG=NC_001148:+126006,126446 /DEF=Hypothetical ORF /NOTE=Ypl225wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006146 // YPL225W SGDID:S0006146, Chr XVI from 126006-126446, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017013 // cdna:Genscan chromosome:SGD1:XVI:126006:126446:1 // ensembl // 11 // --- /// YPL225W // cdna:known chromosome:SGD1:XVI:126006:126446:1 gene:YPL225W // ensembl // 11 // --- --- No cerevisiae_gene -1.32636181899088 1.13035207565456 -1.10990378544688 -1.15458455581294 -1.13365023824634 Max fold change below threshold 4 1.32636181899088 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778167_at YPL094C.S1 Essential subunit of Sec63 complex (Sec63p, Sec62p, Sec66p and Sec72p); with Sec61 complex, Kar2p/BiP and Lhs1p forms a channel competent for SRP-dependent and post-translational SRP-independent protein targeting and import into the ER 1.32561415059274 1668.49859619141 2032.71459960938 SEC62 6620 // posttranslational protein-membrane targeting // traceable author statement 5789 // endoplasmic reticulum membrane // traceable author statement /// 31207 // Sec62/Sec63 complex // inferred from physical interaction 5515 // protein binding // inferred from mutant phenotype /// 5515 // protein binding // inferred from physical interaction /// 8565 // protein transporter activity // traceable author statement 2078.33935546875 1567.83129882813 1769.16589355469 1987.08984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL094C /GEN=SEC62 /DB_XREF=GI:41629689 /SEG=NC_001148:-369834,370658 /DEF=membrane component of ER protein translocation apparatus /NOTE=Sec62p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence TAS] [pmid 10564637]; go_function: protein binding [goid GO:0005515] [evidence IMP,IPI] [pmid 11071912]; go_function: protein transporter activity [goid GO:0008565] [evidence TAS] [pmid 10564637]; go_process: SRP-dependent cotranslational membrane targeting, translocation [goid GO:0006616] [evidence TAS] [pmid 10564637] --- --- --- --- --- S0006015 // span:150-169,179-201 // numtm:2 S0006015 // SEC62 SGDID:S0006015, Chr XVI from 370660-369836, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021011 // cdna:GeneFinder chromosome:SGD1:XVI:369836:370687:-1 // ensembl // 11 // --- /// YPL094C // cdna:known chromosome:SGD1:XVI:369836:370660:-1 gene:YPL094C // ensembl // 11 // --- --- No cerevisiae_gene -1.12415887433016 -1.32561415059274 1.09659071820364 -1.17475662572991 -1.04592118066818 Max fold change below threshold 4 1.32561415059274 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769812_at YHR191C.S1 Subunit of a complex with Ctf18p that shares some subunits with Replication Factor C and is required for sister chromatid cohesion 1.32510265356728 167.296653747559 141.871795654297 CTF8 7064 // mitotic sister chromatid cohesion // inferred from mutant phenotype /// 7064 // mitotic sister chromatid cohesion // inferred from genetic interaction 5663 // DNA replication factor C complex // inferred from physical interaction --- 141.850524902344 156.792007446289 177.801300048828 141.89306640625 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR191C /GEN=CTF8 /DB_XREF=GI:6321985 /SEG=NC_001140:-486228,486629 /DEF=Subunit of a complex with Ctf18p that shares some subunits with Replication Factor C and is required for sister chromatid cohesion /NOTE=Ctf8p; go_component: DNA replication factor C complex [goid GO:0005663] [evidence IPI] [pmid 11389843]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitotic sister chromatid cohesion [goid GO:0007064] [evidence IGI,IMP] [pmid 11389843] --- --- --- --- --- --- S0001234 // CTF8 SGDID:S0001234, Chr VIII from 486630-486229, reverse complement, Verified ORF // sgd // 11 // --- /// YHR191C // cdna:known chromosome:SGD1:VIII:486229:486630:-1 gene:YHR191C // ensembl // 11 // --- --- No cerevisiae_gene 1.20809985374852 1.10533258551022 1.32510265356728 1.25344125565439 1.00029990374682 Max fold change below threshold 4 1.32510265356728 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778681_at YBL058W.S1 UBX (ubiquitin regulatory X) domain-containing protein that regulates Glc7p phosphatase activity and interacts with Cdc48p; interacts with ubiquitylated proteins in vivo and is required for degradation of a ubiquitylated model substrate 1.3250227440787 2897.48156738281 2834.95141601563 SHP1 5977 // glycogen metabolism // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype /// 43161 // proteasomal ubiquitin-dependent protein catabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 2887.29443359375 2739.86987304688 3055.09326171875 2782.6083984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL058W /GEN=SHP1 /DB_XREF=GI:6319413 /SEG=NC_001134:+111401,112672 /DEF=Putative regulator of Glc7p (protein phosphatase I), localizes to the cytoplasm and nucleus /NOTE=Shp1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: glycogen metabolism [goid GO:0005977] [evidence IMP] [pmid 7891699]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 7891699] --- --- --- --- --- --- S0000154 // SHP1 SGDID:S0000154, Chr II from 111439-112710, Verified ORF // sgd // 11 // --- /// GENSCAN00000021092 // cdna:Genscan chromosome:SGD1:II:111439:112710:1 // ensembl // 11 // --- /// GENEFINDER00000022408 // cdna:GeneFinder chromosome:SGD1:II:111439:112710:1 // ensembl // 11 // --- /// YBL058W // cdna:known chromosome:SGD1:II:111439:112710:1 gene:YBL058W // ensembl // 11 // --- --- No cerevisiae_gene -1.3250227440787 -1.05380713952774 -1.06732239515924 1.05811628567307 -1.03762154790269 Max fold change below threshold 4 1.3250227440787 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769853_at YBR295W.S1 P-type metal-transporting ATPase with a role in copper and iron homeostasis; R970G-substitution in the C-terminal region confers cadmium resistance 1.32488352194108 1084.35458374023 1083.17977905273 PCA1 6878 // copper ion homeostasis // traceable author statement /// 6879 // iron ion homeostasis // inferred from mutant phenotype 16020 // membrane // inferred from mutant phenotype /// 16020 // membrane // inferred from sequence similarity 15662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from mutant phenotype /// 15662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from sequence similarity 1007.70208740234 833.621276855469 1335.087890625 1158.65747070313 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR295W /GEN=PCA1 /DB_XREF=GI:6319772 /SEG=NC_001134:+792805,796455 /DEF=thought to play a role in resistance to copper ion toxicity /NOTE=Pca1p; go_component: membrane [goid GO:0016020] [evidence IMP,ISS] [pmid 7754711]; go_function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [goid GO:0015662] [evidence IMP,ISS] [pmid 7754711]; go_process: copper ion homeostasis [goid GO:0006878] [evidence TAS] [pmid 10940034] --- --- --- ec // A1A3_HUMAN // (P13637) Sodium/potassium-transporting ATPase alpha-3 chain (EC 3.6.3.9) (Sodium pump 3) (Na+/K+ ATPase 3) (Alpha(III)) // 1.0E-124 --- S0000499 // span:558-580,593-612,627-649,809-831,851-873,1165-1187,1192-1214 // numtm:7 S0000499 // PCA1 SGDID:S0000499, Chr II from 792843-796493, Verified ORF // sgd // 11 // --- /// GENSCAN00000021374 // cdna:Genscan chromosome:SGD1:II:792843:796493:1 // ensembl // 11 // --- /// GENEFINDER00000022211 // cdna:GeneFinder chromosome:SGD1:II:792843:796493:1 // ensembl // 11 // --- /// YBR295W // cdna:known chromosome:SGD1:II:792843:796493:1 gene:YBR295W // ensembl // 11 // --- --- No cerevisiae_gene 1.30370302802675 -1.20882481695229 1.18782902026997 1.32488352194108 1.14980159829768 Max fold change below threshold 4 1.32488352194108 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779629_at SPAC4D7.05.S1 --- 1.32480447820872 --- --- --- --- 14.3108367919922 18.9590606689453 18.6761913299561 13.3583755493164 0.030273400247097 0.0561522990465164 0.303710997104645 0.219482004642487 P M A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC4D7.05 /GEN=sum1 /DEF=translation initiation factor --- --- --- --- --- --- D89187 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1038. // gb // 10 // --- /// Y09529 // Schizosaccharomyces pombe mRNA for SUM1 protein. // gb // 10 // --- /// SPAC4D7.05 // |sum1|tif34|eukaryotic translation initiation factor eIF3i|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 10 // --- --- No No -1.23356145369537 1.32480447820872 -1.00497814443771 1.30503838464614 -1.07130067867605 Max fold change below threshold 4 1.32480447820872 Max fold change below threshold PAMAAA No 4 0 PMAA 2 1 1 No No x = 1
1770599_at YKL074C.S1 Protein involved in early pre-mRNA splicing; component of the pre-mRNA-U1 snRNP complex, the commitment complex; interacts with Msl5p/BBP splicing factor and Sub2p; similar to metazoan splicing factor U2AF65 1.32471873137544 654.878326416016 830.188201904297 MUD2 370 // U2-type nuclear mRNA branch site recognition // traceable author statement 243 // commitment complex // inferred from physical interaction 3729 // mRNA binding // inferred from direct assay /// 31202 // RNA splicing factor activity, transesterification mechanism // traceable author statement 762.165893554688 621.230712890625 688.525939941406 898.210510253906 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL074C /GEN=MUD2 /DB_XREF=GI:6322776 /SEG=NC_001143:-294255,295838 /DEF=Involved in early pre-mRNA splicing /NOTE=Mud2p; go_component: commitment complex [goid GO:0000243] [evidence IPI] [pmid 9150140]; go_function: mRNA binding [goid GO:0003729] [evidence IDA] [pmid 7926772]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence TAS] [pmid 9476892]; go_process: U2-type nuclear mRNA branch site recognition [goid GO:0000370] [evidence TAS] [pmid 9150140] --- --- --- --- --- --- S0001557 // MUD2 SGDID:S0001557, Chr XI from 295838-294255, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018361 // cdna:Genscan chromosome:SGD1:XI:294255:295838:-1 // ensembl // 11 // --- /// GENEFINDER00000023021 // cdna:GeneFinder chromosome:SGD1:XI:294255:295838:-1 // ensembl // 11 // --- /// YKL074C // cdna:known chromosome:SGD1:XI:294255:295838:-1 gene:YKL074C // ensembl // 11 // --- --- No cerevisiae_gene -1.32471873137544 -1.22686447681938 1.14761895380965 -1.10695305629233 1.17849738206562 Max fold change below threshold 4 1.32471873137544 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773382_at YFR018C.S1 Hypothetical protein 1.32467332282795 640.766586303711 636.197540283203 --- --- --- --- 652.510559082031 492.582244873047 788.950927734375 619.884521484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR018C /GEN=GSY1 /DB_XREF=GI:14318540 /SEG=NC_001138:-183119,184210 /DEF=Hypothetical ORF /NOTE=Yfr018cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001914 // YFR018C SGDID:S0001914, Chr VI from 184210-183119, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018560 // cdna:GeneFinder chromosome:SGD1:VI:183119:184210:-1 // ensembl // 11 // --- /// GENSCAN00000023259 // cdna:Genscan chromosome:SGD1:VI:183119:184210:-1 // ensembl // 11 // --- /// YFR018C // cdna:known chromosome:SGD1:VI:183119:184210:-1 gene:YFR018C // ensembl // 11 // --- --- No cerevisiae_gene 1.10571660521313 -1.32467332282795 -1.31775908060496 1.20910062948911 -1.05263244437775 Max fold change below threshold 4 1.32467332282795 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773805_at YJR098C.S1 Hypothetical protein 1.32430390221496 321.084243774414 292.565216064453 --- --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 278.5126953125 273.333038330078 368.83544921875 306.617736816406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR098C /GEN=JJJ3 /DB_XREF=GI:6322558 /SEG=NC_001142:-613103,615070 /DEF=Hypothetical ORF /NOTE=Yjr098cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003859 // YJR098C SGDID:S0003859, Chr X from 615070-613103, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024210 // cdna:Genscan chromosome:SGD1:X:613103:615067:-1 // ensembl // 11 // --- /// GENEFINDER00000024452 // cdna:GeneFinder chromosome:SGD1:X:613103:615067:-1 // ensembl // 11 // --- /// YJR098C // cdna:known chromosome:SGD1:X:613103:615070:-1 gene:YJR098C // ensembl // 11 // --- --- No cerevisiae_gene -1.01922958370002 -1.01894998502218 -1.11018694579935 1.32430390221496 1.10091116842043 Max fold change below threshold 4 1.32430390221496 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774342_at YOR326W.S1 One of two type V myosins, involved in polarized distribution of mitochondria; required for mitochondrion and vacuole inheritance and nuclear spindle orientation; moves multiple cargo 1.32384978178927 1384.48175048828 1370.41680908203 MYO2 1 // mitochondrion inheritance // traceable author statement /// 11 // vacuole inheritance // traceable author statement /// 6897 // endocytosis // inferred from mutant phenotype /// 6897 // endocytosis // inferred from physical interaction /// 7118 // budding cell apical bud growth // inferred from physical interaction /// 7118 // budding cell apical bud growth // inferred from mutant phenotype /// 7119 // budding cell isotropic bud growth // inferred from mutant phenotype /// 7119 // budding cell isotropic bud growth // inferred from physical interaction /// 16192 // vesicle-mediated transport // inferred from mutant phenotype /// 16192 // vesicle-mediated transport // inferred from physical interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from genetic interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction 30478 // actin cap // inferred from direct assay /// 30482 // actin cable // inferred from direct assay 146 // microfilament motor activity // traceable author statement 1338.76708984375 1473.146484375 1295.81701660156 1402.06652832031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR326W /GEN=MYO2 /DB_XREF=GI:6324902 /SEG=NC_001147:+925716,930440 /DEF=Myo2p plays a crucial role in polarized distribution of mitochondria. /NOTE=Myo2p; go_component: actin cable (sensu Fungi) [goid GO:0030482] [evidence IDA] [pmid 10652251]; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IDA] [pmid 10652251]; go_function: microfilament motor activity [goid GO:0000146] [evidence TAS] [pmid 9153752]; go_process: apical bud growth [goid GO:0007118] [evidence IMP,IPI] [pmid 10652251]; go_process: endocytosis [goid GO:0006897] [evidence IMP,IPI] [pmid 10652251]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IGI,IMP,IPI] [pmid 10652251]; go_process: isotropic bud growth [goid GO:0007119] [evidence IMP,IPI] [pmid 10652251]; go_process: mitochondrion inheritance [goid GO:0000001] [evidence TAS] [pmid 10652251]; go_process: vacuole inheritance [goid GO:0000011] [evidence TAS] [pmid 10652251]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IMP,IPI] [pmid 10652251] --- --- --- --- scop // a.2.7.Valyl-tRNA synthetase (ValRS) C-terminal domain // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Valyl-tRNA synthetase (ValRS) C-terminal domain // 0.0320000015199184 --- S0005853 // MYO2 SGDID:S0005853, Chr XV from 925716-930440, Verified ORF // sgd // 11 // --- /// GENSCAN00000017779 // cdna:Genscan chromosome:SGD1:XV:925716:930440:1 // ensembl // 11 // --- /// GENEFINDER00000022741 // cdna:GeneFinder chromosome:SGD1:XV:925716:930440:1 // ensembl // 11 // --- /// YOR326W // cdna:known chromosome:SGD1:XV:925716:930440:1 gene:YOR326W // ensembl // 11 // --- --- No cerevisiae_gene 1.19935343452009 1.10037548394391 -1.32384978178927 -1.03314516840875 1.04728189014861 Max fold change below threshold 4 1.32384978178927 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778202_at YOR001W.S1 Exonuclease component of the nuclear exosome; contributes to the quality-control system that retains and degrades aberrant mRNAs in the nucleus 1.32364435604378 629.370086669922 588.653350830078 RRP6 6365 // 35S primary transcript processing // traceable author statement /// 6402 // mRNA catabolism // inferred from mutant phenotype 176 // nuclear exosome (RNase complex) // inferred from direct assay 175 // 3'-5'-exoribonuclease activity // traceable author statement 556.891723632813 565.5703125 693.169860839844 620.414978027344 0.00195312988944352 0.00292969006113708 0.00195312988944352 0.00195312988944352 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR001W /GEN=RRP6 /DB_XREF=GI:6324574 /SEG=NC_001147:+326832,329033 /DEF=Exonuclease component of the nuclear exosome; contributes to the quality-control system that retains and degrades aberrant mRNAs in the nucleus /NOTE=Rrp6p; go_component: nuclear exosome (RNase complex) [goid GO:0000176] [evidence IDA] [pmid 10465791]; go_function: 3'-5'-exoribonuclease activity [goid GO:0000175] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0005527 // RRP6 SGDID:S0005527, Chr XV from 326832-329033, Verified ORF // sgd // 11 // --- /// GENSCAN00000017468 // cdna:Genscan chromosome:SGD1:XV:326832:329033:1 // ensembl // 11 // --- /// GENEFINDER00000022557 // cdna:GeneFinder chromosome:SGD1:XV:326985:329033:1 // ensembl // 11 // --- /// YOR001W // cdna:known chromosome:SGD1:XV:326832:329033:1 gene:YOR001W // ensembl // 11 // --- --- No cerevisiae_gene 1.32364435604378 1.01558397889373 -1.08713069711802 1.24471208930533 1.11406751384299 Max fold change below threshold 4 1.32364435604378 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771331_at YGL238W.S1 Nuclear envelope protein that mediates the nuclear export of importin alpha (Srp1p), homolog of metazoan CAS protein, required for accurate chromosome segregation 1.32344751833154 819.796844482422 1028.67242431641 CSE1 6611 // protein-nucleus export // inferred from genetic interaction /// 6611 // protein-nucleus export // inferred from physical interaction 5635 // nuclear membrane // inferred from direct assay 8262 // importin-alpha export receptor activity // inferred from genetic interaction /// 8262 // importin-alpha export receptor activity // inferred from physical interaction /// 8262 // importin-alpha export receptor activity // inferred from sequence similarity 977.74560546875 836.619384765625 802.974304199219 1079.59924316406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL238W /GEN=CSE1 /DB_XREF=GI:6321198 /SEG=NC_001139:+49552,52434 /DEF=Nuclear envelope protein that mediates the nuclear export of importin alpha (Srp1p), homolog of metazoan CAS protein, required for accurate chromosome segregation /NOTE=Cse1p; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 9857050]; go_function: importin-alpha export receptor activity [goid GO:0008262] [evidence IGI,IPI,ISS] [pmid 9857050]; go_process: protein-nucleus export [goid GO:0006611] [evidence IGI,IPI] [pmid 9857050] --- --- --- --- --- --- S0003207 // CSE1 SGDID:S0003207, Chr VII from 49552-52434, Verified ORF // sgd // 11 // --- /// GENSCAN00000019172 // cdna:Genscan chromosome:SGD1:VII:49552:52434:1 // ensembl // 11 // --- /// YGL238W // cdna:known chromosome:SGD1:VII:49552:52434:1 gene:YGL238W // ensembl // 11 // --- --- No cerevisiae_gene 1.32344751833154 -1.16868629065135 -1.04516609058533 -1.21765491168964 1.10417192071805 Max fold change below threshold 4 1.32344751833154 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769800_at YDR231C.S1 Mitochondrial inner membrane protein, required for proteolytic processing of Cox2p and its assembly into cytochrome c oxidase 1.32328623630323 1579.35827636719 1456.28540039063 COX20 8535 // cytochrome c oxidase complex assembly // inferred from mutant phenotype /// 9060 // aerobic respiration // inferred from mutant phenotype /// 16485 // protein processing // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay 51082 // unfolded protein binding // inferred from direct assay 1379.5419921875 1333.18762207031 1825.52893066406 1533.02880859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR231C /GEN=COX20 /DB_XREF=GI:6320437 /SEG=NC_001136:-926285,926902 /DEF=Mitochondrial inner membrane protein, required for proteolytic processing of Cox2p and its assembly into cytochrome c oxidase /NOTE=Cox20p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 10671482]; go_function: chaperone activity [goid GO:0003754] [evidence IDA] [pmid 10671482]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 10671482]; go_process: cytochrome c oxidase biogenesis [goid GO:0008535] [evidence IMP] [pmid 10671482]; go_process: protein processing [goid GO:0016485] [evidence IMP] [pmid 10671482] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 0.0270000007003546 --- S0002639 // COX20 SGDID:S0002639, Chr IV from 926904-926287, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023805 // cdna:GeneFinder chromosome:SGD1:IV:926287:926904:-1 // ensembl // 11 // --- /// GENSCAN00000025278 // cdna:Genscan chromosome:SGD1:IV:926287:926904:-1 // ensembl // 11 // --- /// YDR231C // cdna:known chromosome:SGD1:IV:926287:926904:-1 gene:YDR231C // ensembl // 11 // --- YDR230W // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene -1.19133844057185 -1.03476957732716 1.16797894525966 1.32328623630323 1.11125925653258 Max fold change below threshold 4 1.32328623630323 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772792_at YDR477W.S1 AMP-activated serine/threonine protein kinase found in a complex containing Snf4p and members of the Sip1p/Sip2p/Gal83p family; required for transcription of glucose-repressed genes, thermotolerance, sporulation, and peroxisome biogenesis 1.32314553502292 1185.05090332031 1315.34545898438 SNF1 1302 // replicative cell aging // inferred from direct assay /// 6006 // glucose metabolism // traceable author statement /// 6109 // regulation of carbohydrate metabolism // inferred from genetic interaction /// 6109 // regulation of carbohydrate metabolism // inferred from physical interaction /// 6109 // regulation of carbohydrate metabolism // traceable author statement /// 6468 // protein amino acid phosphorylation // inferred from direct assay /// 6995 // cellular response to nitrogen starvation // inferred from direct assay /// 7155 // cell adhesion // inferred from mutant phenotype /// 7165 // signal transduction // traceable author statement /// 30447 // filamentous growth // inferred from mutant phenotype 324 // vacuole (sensu Fungi) // inferred from physical interaction /// 5634 // nucleus // inferred from physical interaction /// 5737 // cytoplasm // inferred from physical interaction /// 5739 // mitochondrion // inferred from direct assay 4679 // AMP-activated protein kinase activity // inferred from direct assay 1198.26501464844 1044.52368164063 1325.578125 1432.42590332031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR477W /GEN=SNF1 /DB_XREF=GI:6320685 /SEG=NC_001136:+1412361,1414262 /DEF=Required for release from glucose repression, invertase expression, sporulation, and for expression of catabolite-repressed genes when glucose is limiting. Regulates Adr1-dependent transcription primarily at the level of chromatin binding. /NOTE=Snf1p; go_component: cytoplasm [goid GO:0005737] [evidence IPI] [pmid 11331606]; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 11331606]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IPI] [pmid 11331606]; go_function: SNF1A/AMP-activated protein kinase activity [goid GO:0004679] [evidence IDA] [pmid 11486005]; go_process: cell adhesion [goid GO:0007155] [evidence IMP] [pmid 12556493]; go_process: cellular response to nitrogen starvation [goid GO:0006995] [evidence IDA] [pmid 12024013]; go_process: filamentous growth [goid GO:0030447] [evidence IMP] [pmid 12556493]; go_process: glucose metabolism [goid GO:0006006] [evidence TAS] [pmid 10322167]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 11486005]; go_process: regulation of carbohydrate metabolism [goid GO:0006109] [evidence IGI,IPI,TAS] [pmid 12167649]; go_process: signal transduction [goid GO:0007165] [evidence TAS] [pmid 10322167] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 7.0E-75 /// hanks // 2.2.5 // CaMK Group; CaMK II KIN1/SNF1/Nim1; SNF1 // 1.0E-146 --- --- S0002885 // SNF1 SGDID:S0002885, Chr IV from 1412363-1414264, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023946 // cdna:GeneFinder chromosome:SGD1:IV:1412363:1414264:1 // ensembl // 11 // --- /// GENSCAN00000025473 // cdna:Genscan chromosome:SGD1:IV:1412648:1414264:1 // ensembl // 11 // --- /// YDR477W // cdna:known chromosome:SGD1:IV:1412363:1414264:1 gene:YDR477W // ensembl // 11 // --- --- No cerevisiae_gene 1.11251965758191 -1.14718798214927 1.32314553502292 1.10624787404722 1.19541661135836 Max fold change below threshold 4 1.32314553502292 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770179_at YJL108C.S1 Pheromone-regulated protein, predicted to have 5 transmembrane segments /// Hypothetical protein 1.32294870865924 4790.45532226563 4538.04150390625 PRM10 747 // conjugation with cellular fusion // inferred from expression pattern 16021 // integral to membrane // inferred from sequence similarity --- 5081.615234375 5739.78271484375 3841.1279296875 3994.4677734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL108C /GEN=PRM10 /DB_XREF=GI:6322353 /SEG=NC_001142:-217622,218773 /DEF=Pheromone-regulated protein, predicted to have 5 transmembrane segments /NOTE=Prm10p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 11062271]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: conjugation with cellular fusion [goid GO:0000747] [evidence IEP] [pmid 11062271] --- --- --- --- --- S0003644 // span:62-84,88-107,114-136,146-168,181-203,218-238,245-262,272-289,294-313,351-373 // numtm:10 S0003644 // PRM10 SGDID:S0003644, Chr X from 218773-217622, reverse complement, Verified ORF // sgd // 11 // --- /// YJL108C // cdna:known chromosome:SGD1:X:217622:218773:-1 gene:YJL108C // ensembl // 11 // --- --- No cerevisiae_gene -1.25609517944875 1.12951934574198 -1.28877139679001 -1.32294870865924 -1.27216328246953 Max fold change below threshold 4 1.32294870865924 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771677_at YHR060W.S1 Integral membrane protein that is required for vacuolar H+-ATPase (V-ATPase) function, although not an actual component of the V-ATPase complex; functions in the assembly of the V-ATPase; localized to the yeast endoplasmic reticulum (ER) 1.3227387920748 646.301208496094 673.583801269531 VMA22 5977 // glycogen metabolism // inferred from direct assay /// 6461 // protein complex assembly // inferred from mutant phenotype /// 7035 // vacuolar acidification // inferred from mutant phenotype 5789 // endoplasmic reticulum membrane // traceable author statement 51082 // unfolded protein binding // inferred from mutant phenotype /// 51082 // unfolded protein binding // inferred from physical interaction /// 51082 // unfolded protein binding // inferred from genetic interaction 621.537048339844 648.38720703125 644.215209960938 725.630554199219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR060W /GEN=VMA22 /DB_XREF=GI:6321851 /SEG=NC_001140:+220726,221271 /DEF=Required for V-ATPase activity. Required for the biogenesis of a functional vacuolar ATPase (V-ATPase), but not part of the final enzyme complex. /NOTE=Vma22p; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence TAS] [pmid 9660861]; go_function: chaperone activity [goid GO:0003754] [evidence IGI,IPI] [pmid 7673216]; go_function: chaperone activity [goid GO:0003754] [evidence IMP] [pmid 8582630]; go_process: glycogen metabolism [goid GO:0005977] [evidence IDA] [pmid 12096123]; go_process: protein complex assembly [goid GO:0006461] [evidence IMP] [pmid 7673216]; go_process: vacuolar acidification [goid GO:0007035] [evidence IMP] [pmid 1628805] --- --- --- --- --- --- S0001102 // VMA22 SGDID:S0001102, Chr VIII from 220726-221271, Verified ORF // sgd // 11 // --- /// GENSCAN00000016605 // cdna:Genscan chromosome:SGD1:VIII:220726:221271:1 // ensembl // 11 // --- /// GENEFINDER00000020185 // cdna:GeneFinder chromosome:SGD1:VIII:220741:221271:1 // ensembl // 11 // --- /// YHR060W // cdna:known chromosome:SGD1:VIII:220726:221271:1 gene:YHR060W // ensembl // 11 // --- --- No cerevisiae_gene 1.14341414927612 1.04319961096949 1.3227387920748 1.03648722418345 1.1674775560643 Max fold change below threshold 4 1.3227387920748 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780115_at YHR099W.S1 Subunit of SAGA and NuA4 histone acetyltransferase complexes; interacts with acidic activators (e.g., Gal4p) which leads to transcription activation; similar to human TRRAP, which is a cofactor for c-Myc mediated oncogenic transformation 1.32237097265929 830.563262939453 668.043060302734 TRA1 6357 // regulation of transcription from RNA polymerase II promoter // inferred from physical interaction /// 16573 // histone acetylation // inferred from physical interaction /// 16573 // histone acetylation // inferred from direct assay 123 // histone acetyltransferase complex // inferred from physical interaction /// 43189 // H4/H2A histone acetyltransferase complex // inferred from physical interaction /// 46695 // SLIK (SAGA-like) complex // inferred from physical interaction 4402 // histone acetyltransferase activity // inferred from direct assay 648.837707519531 858.004150390625 803.122375488281 687.248413085938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR099W /GEN=TRA1 /DB_XREF=GI:6321891 /SEG=NC_001140:+302763,313997 /DEF=TRA1 is the homolog of the human protein TRRAP which we have isolated as an essential cofactor of c-Myc. /NOTE=Tra1p; go_component: histone acetyltransferase complex [goid GO:0000123] [evidence IPI] [pmid 10911987]; go_function: histone acetyltransferase activity [goid GO:0004402] [evidence IDA] [pmid 10911987]; go_process: histone acetylation [goid GO:0016573] [evidence IDA] [pmid 10911987]; go_process: histone acetylation [goid GO:0016573] [evidence IPI] [pmid 9885573]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IPI] [pmid 10911987] --- --- --- --- --- --- S0001141 // TRA1 SGDID:S0001141, Chr VIII from 302763-313997, Verified ORF // sgd // 11 // --- /// GENSCAN00000016638 // cdna:Genscan chromosome:SGD1:VIII:302763:313997:1 // ensembl // 11 // --- /// GENEFINDER00000020159 // cdna:GeneFinder chromosome:SGD1:VIII:303051:313997:1 // ensembl // 11 // --- /// YHR099W // cdna:known chromosome:SGD1:VIII:302763:313997:1 gene:YHR099W // ensembl // 11 // --- --- No cerevisiae_gene -1.25055092528273 1.32237097265929 1.06380982670993 1.23778622324305 1.05919924986057 Max fold change below threshold 4 1.32237097265929 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774895_at YJL023C.S1 Protein required for respiratory growth 1.32189076881023 349.272521972656 428.759948730469 PET130 --- 5739 // mitochondrion // inferred from direct assay --- 397.875244140625 300.989501953125 397.555541992188 459.644653320313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL023C /GEN=PET130 /DB_XREF=GI:6322438 /SEG=NC_001142:-397271,398314 /DEF=Protein required for respiratory growth /NOTE=Pet130p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003560 // PET130 SGDID:S0003560, Chr X from 398314-397271, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024120 // cdna:Genscan chromosome:SGD1:X:397271:398314:-1 // ensembl // 11 // --- /// YJL023C // cdna:known chromosome:SGD1:X:397271:398314:-1 gene:YJL023C // ensembl // 11 // --- --- No cerevisiae_gene -1.31597590993337 -1.32189076881023 -1.0396410530109 -1.00080416976917 1.15524818417166 Max fold change below threshold 4 1.32189076881023 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777463_at YMR191W.S1 Protein required for survival at high temperature during stationary phase; not required for growth on nonfermentable carbon sources 1.32184962740025 4238.41772460938 3491.47094726563 SPG5 --- --- --- 3635.20458984375 4683.37841796875 3793.45703125 3347.7373046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR191W /GEN=SGS1 /DB_XREF=GI:37362682 /SEG=NC_001145:+645655,646776 /DEF=Protein required for survival at high temperature during stationary phase /NOTE=Ymr191wp --- --- --- --- --- --- S0004803 // SPG5 SGDID:S0004803, Chr XIII from 645655-646776, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018874 // cdna:Genscan chromosome:SGD1:XIII:645655:646776:1 // ensembl // 11 // --- /// YMR191W // cdna:known chromosome:SGD1:XIII:645655:646776:1 gene:YMR191W // ensembl // 11 // --- --- No cerevisiae_gene -1.32184962740025 1.28833970749637 1.00749103513694 1.04353329709376 -1.08586912860628 Max fold change below threshold 4 1.32184962740025 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778936_at YGL244W.S1 Subunit of the RNA polymerase II-associated Paf1 complex; directly or indirectly regulates DNA-binding properties of Spt15p (TATA box-binding protein) and relative activities of different TATA elements 1.32168183614959 579.230621337891 733.959899902344 RTF1 6366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 6368 // RNA elongation from RNA polymerase II promoter // inferred from physical interaction /// 16571 // histone methylation // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 8023 // transcription elongation factor complex // inferred from physical interaction /// 16593 // Cdc73/Paf1 complex // inferred from physical interaction /// 16593 // Cdc73/Paf1 complex // traceable author statement 16944 // RNA polymerase II transcription elongation factor activity // inferred from physical interaction 694.059387207031 525.133483886719 633.327758789063 773.860412597656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL244W /GEN=RTF1 /DB_XREF=GI:6321193 /SEG=NC_001139:+41498,43174 /DEF=Directly or indirectly regulates DNA-binding properties of Spt15p, TATA box-binding protein, and relative activities of different TATA elements. Member of RNA polymerase II-associated Paf1 complex. /NOTE=Rtf1p; go_component: Cdc73/Paf1 complex [goid GO:0016593] [evidence IPI] [pmid 11884586]; go_component: Cdc73/Paf1 complex [goid GO:0016593] [evidence TAS] [pmid 12773564]; go_component: transcription elongation factor complex [goid GO:0008023] [evidence IPI] [pmid 12242279]; go_function: Pol II transcription elongation factor activity [goid GO:0016944] [evidence IPI] [pmid 12242279]; go_process: RNA elongation from Pol II promoter [goid GO:0006368] [evidence IPI] [pmid 12242279]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IMP] [pmid 11884586] --- --- --- --- --- --- S0003213 // RTF1 SGDID:S0003213, Chr VII from 41498-43174, Verified ORF // sgd // 11 // --- /// GENSCAN00000019168 // cdna:Genscan chromosome:SGD1:VII:41498:43174:1 // ensembl // 11 // --- /// GENEFINDER00000021575 // cdna:GeneFinder chromosome:SGD1:VII:41498:43174:1 // ensembl // 11 // --- /// YGL244W // cdna:known chromosome:SGD1:VII:41498:43174:1 gene:YGL244W // ensembl // 11 // --- --- No cerevisiae_gene 1.03604635425731 -1.32168183614959 1.08015727783279 -1.09589288891125 1.11497722941513 Max fold change below threshold 4 1.32168183614959 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771299_at YDR347W.S1 Mitochondrial ribosomal protein of the small subunit; MRP1 exhibits genetic interactions with PET122, encoding a COX3-specific translational activator, and with PET123, encoding a small subunit mitochondrial ribosomal protein 1.32102156636876 1005.21789550781 1136.52697753906 MRP1 6412 // protein biosynthesis // traceable author statement /// 6412 // protein biosynthesis // inferred from direct assay 5763 // mitochondrial small ribosomal subunit // traceable author statement /// 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // traceable author statement /// 3735 // structural constituent of ribosome // inferred from direct assay 1107.30859375 838.221435546875 1172.21435546875 1165.74536132813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR347W /GEN=MRP1 /DB_XREF=GI:6320554 /SEG=NC_001136:+1169168,1170133 /DEF=Mitochondrial ribosomal protein of the small subunit; MRP1 exhibits genetic interactions with PET122, encoding a COX3-specific translational activator, and with PET123, encoding a small subunit mitochondrial ribosomal protein /NOTE=Mrp1p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 11278769]; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 11278769]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 11278769]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0002755 // MRP1 SGDID:S0002755, Chr IV from 1169170-1170135, Verified ORF // sgd // 11 // --- /// GENSCAN00000025373 // cdna:Genscan chromosome:SGD1:IV:1169170:1170135:1 // ensembl // 11 // --- /// YDR347W // cdna:known chromosome:SGD1:IV:1169170:1170135:1 gene:YDR347W // ensembl // 11 // --- GENEFINDER00000023931 // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene -1.1204071822088 -1.32102156636876 1.04928006303996 1.05861578433067 1.0527736964275 Max fold change below threshold 4 1.32102156636876 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776673_at YNL036W.S1 Carbonic anhydrase; poorly transcribed under aerobic conditions and at an undetectable level under anaerobic conditions; involved in non-classical protein export pathway 1.31967434463 6202.86962890625 5143.0263671875 NCE103 6979 // response to oxidative stress // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4089 // carbonate dehydratase activity // inferred from direct assay 5683.01123046875 7499.72412109375 4906.01513671875 4603.04150390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL036W /GEN=NCE103 /DB_XREF=GI:6324292 /SEG=NC_001146:+559812,560477 /DEF=endogenous substrate for nonclassical export (Cleves et al. J Cell Biol 1996 133:1017-26). /NOTE=Nce103p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004981 // NCE103 SGDID:S0004981, Chr XIV from 559813-560478, Verified ORF // sgd // 11 // --- /// U52369 // Saccharomyces cerevisiae non-classical export Nce3p (NCE3) mRNA, complete cds. // gb // 10 // --- /// GENSCAN00000020006 // cdna:Genscan chromosome:SGD1:XIV:559813:560478:1 // ensembl // 11 // --- /// YNL036W // cdna:known chromosome:SGD1:XIV:559813:560478:1 gene:YNL036W // ensembl // 11 // --- --- No cerevisiae_gene 1.09465128169923 1.31967434463 -1.17954601471219 -1.15837621207783 -1.23462089699735 Max fold change below threshold 4 1.31967434463 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774816_s_at SPBC19G7.12c.S1 --- 1.3192688822925 --- --- --- --- 1.14238572120667 1.50711393356323 1.44301962852478 0.894403159618378 0.567627012729645 0.74609375 0.753906011581421 0.601073980331421 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC19G7.12c /DEF=sequence orphan --- --- --- --- --- --- SPBC19G7.18c // ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual // sanger // 10 // --- --- No No -1.02439689237544 1.3192688822925 -1.09184333828116 1.26316322213881 -1.27726038187756 Max fold change below threshold 0 1.3192688822925 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1779380_at YJR064W.S1 Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo 1.31849939521452 1509.71673583984 1965.73083496094 CCT5 6457 // protein folding // traceable author statement /// 7010 // cytoskeleton organization and biogenesis // traceable author statement 5737 // cytoplasm // traceable author statement /// 5832 // chaperonin-containing T-complex // traceable author statement /// 5832 // chaperonin-containing T-complex // inferred from physical interaction /// 5856 // cytoskeleton // traceable author statement 51082 // unfolded protein binding // traceable author statement 1966.01184082031 1491.09802246094 1528.33544921875 1965.44982910156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR064W /GEN=CCT5 /DB_XREF=GI:6322524 /SEG=NC_001142:+555828,557516 /DEF=Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo /NOTE=Cct5p; go_component: chaperonin-containing T-complex [goid GO:0005832] [evidence TAS] [pmid 8771707]; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 8771707]; go_component: cytoskeleton [goid GO:0005856] [evidence TAS] [pmid 8771707]; go_function: chaperone activity [goid GO:0003754] [evidence TAS] [pmid 8771707]; go_process: cytoskeleton organization and biogenesis [goid GO:0007010] [evidence TAS] [pmid 8771707]; go_process: protein folding [goid GO:0006457] [evidence TAS] [pmid 8771707] --- --- --- --- --- --- S0003825 // CCT5 SGDID:S0003825, Chr X from 555828-557516, Verified ORF // sgd // 11 // --- /// GENSCAN00000024184 // cdna:Genscan chromosome:SGD1:X:555828:557516:1 // ensembl // 11 // --- /// GENEFINDER00000024542 // cdna:GeneFinder chromosome:SGD1:X:555828:557516:1 // ensembl // 11 // --- /// YJR064W // cdna:known chromosome:SGD1:X:555828:557516:1 gene:YJR064W // ensembl // 11 // --- --- No cerevisiae_gene -1.1328959194186 -1.31849939521452 -1.15848500402956 -1.28637455986858 -1.00028594559394 Max fold change below threshold 4 1.31849939521452 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777570_at YJL027C.S1 Hypothetical protein 1.31829909404901 21.1160955429077 16.5620427131653 --- --- --- --- 18.8359870910645 20.4013519287109 21.8308391571045 14.2880983352661 0.00122069998178631 0.00122069998178631 0.000244141003349796 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL027C /GEN=VPS53 /DB_XREF=GI:6322433 /SEG=NC_001142:-391749,392165 /DEF=Hypothetical ORF /NOTE=Yjl027cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003564 // YJL027C SGDID:S0003564, Chr X from 392165-391749, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YJL027C // cdna:known chromosome:SGD1:X:391749:392165:-1 gene:YJL027C // ensembl // 11 // --- --- No cerevisiae_gene 1.14429715936903 1.08310500692523 -1.20509943903681 1.15899629000387 -1.31829909404901 Max fold change below threshold 4 1.31829909404901 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776686_at YPL040C.S1 Mitochondrial isoleucyl-tRNA synthetase, null mutant is deficient in respiratory growth 1.31816039279713 140.22208404541 172.266380310059 ISM1 6412 // protein biosynthesis // inferred from mutant phenotype /// 6412 // protein biosynthesis // inferred from sequence similarity /// 6428 // isoleucyl-tRNA aminoacylation // inferred from mutant phenotype /// 6428 // isoleucyl-tRNA aminoacylation // inferred from sequence similarity 5739 // mitochondrion // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from direct assay 4822 // isoleucine-tRNA ligase activity // inferred from sequence similarity /// 4822 // isoleucine-tRNA ligase activity // inferred from mutant phenotype 168.381393432617 127.739685058594 152.704483032227 176.1513671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL040C /GEN=ISM1 /DB_XREF=GI:6325217 /SEG=NC_001148:-475988,478996 /DEF=Mitochondrial isoleucyl-tRNA synthetase, null mutant is deficient in respiratory growth /NOTE=Ism1p; go_component: mitochondrion [goid GO:0005739] [evidence IMP] [pmid 7607232]; go_function: isoleucine-tRNA ligase activity [goid GO:0004822] [evidence IMP,ISS] [pmid 7607232]; go_process: isoleucyl-tRNA aminoacylation [goid GO:0006428] [evidence IMP,ISS] [pmid 7607232]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP,ISS] [pmid 7607232] --- --- --- --- --- --- S0005961 // ISM1 SGDID:S0005961, Chr XVI from 478998-475990, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017157 // cdna:Genscan chromosome:SGD1:XVI:475990:478998:-1 // ensembl // 11 // --- /// GENEFINDER00000020801 // cdna:GeneFinder chromosome:SGD1:XVI:475990:478419:-1 // ensembl // 11 // --- /// YPL040C // cdna:known chromosome:SGD1:XVI:475990:478998:-1 gene:YPL040C // ensembl // 11 // --- --- No cerevisiae_gene 1.25826134071249 -1.31816039279713 1.27147932273576 -1.10266175615212 1.0461450852525 Max fold change below threshold 4 1.31816039279713 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776541_at YML127W.S1 One of 15 subunits of the 'Remodel the Structure of Chromatin' (RSC) complex; DNA-binding protein involved in the synthesis of rRNA and in transcriptional repression and activation of genes regulated by the Target of Rapamycin (TOR) pathway 1.31814690743477 1371.68542480469 1763.86657714844 RSC9 6338 // chromatin remodeling // inferred from physical interaction /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 9303 // rRNA transcription // inferred from mutant phenotype 16586 // RSC complex // inferred from direct assay 3682 // chromatin binding // inferred from physical interaction 1709.97058105469 1446.11743164063 1297.25341796875 1817.76257324219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML127W /GEN=RSC9 /DB_XREF=GI:6323508 /SEG=NC_001145:+17065,18810 /DEF=Remodels the Structure of Chromatin /NOTE=Rsc9p; go_component: chromatin remodeling complex [goid GO:0016585] [evidence IDA] [pmid 11931764]; go_function: chromatin binding [goid GO:0003682] [evidence IPI] [pmid 11931764]; go_process: chromatin remodeling [goid GO:0006338] [evidence IPI] [pmid 11931764]; go_process: rRNA transcription [goid GO:0009303] [evidence IMP] [pmid 11931764]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP] [pmid 11931764] --- --- --- --- --- --- S0004596 // RSC9 SGDID:S0004596, Chr XIII from 17065-18810, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021835 // cdna:GeneFinder chromosome:SGD1:XIII:17065:18810:1 // ensembl // 11 // --- /// GENSCAN00000018609 // cdna:Genscan chromosome:SGD1:XIII:17158:18810:1 // ensembl // 11 // --- /// YML127W // cdna:known chromosome:SGD1:XIII:17065:18810:1 gene:YML127W // ensembl // 11 // --- --- No cerevisiae_gene -1.05570651825764 -1.18245624016489 -1.01318141001972 -1.31814690743477 1.06303733723946 Max fold change below threshold 4 1.31814690743477 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774482_at YLR043C.S1 Cytoplasmic thioredoxin isoenzyme of the thioredoxin system which protects cells against both oxidative and reductive stress, forms LMA1 complex with Pbi2p, acts as a cofactor for Tsa1p, required for ER-Golgi transport and vacuole inheritance 1.31782602450159 2948.5224609375 3339.33911132813 TRX1 11 // vacuole inheritance // inferred from mutant phenotype /// 103 // sulfate assimilation // inferred from genetic interaction /// 6261 // DNA-dependent DNA replication // inferred from mutant phenotype /// 6888 // ER to Golgi transport // inferred from direct assay /// 6890 // retrograde transport, Golgi to ER // inferred from direct assay /// 6979 // response to oxidative stress // inferred from sequence similarity /// 30503 // regulation of cell redox homeostasis // traceable author statement /// 42144 // vacuole fusion, non-autophagic // inferred from direct assay 324 // vacuole (sensu Fungi) // inferred from physical interaction /// 5829 // cytosol // inferred from direct assay 30508 // thiol-disulfide exchange intermediate activity // inferred from sequence similarity 3433.568359375 3291.56567382813 2605.47924804688 3245.10986328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR043C /GEN=TRX1 /DB_XREF=GI:6323072 /SEG=NC_001144:-231703,232014 /DEF=thioredoxin /NOTE=Trx1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 8603912]; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IPI] [pmid 9657146]; go_function: thiol-disulfide exchange intermediate activity [goid GO:0030508] [evidence ISS] [pmid 1988444]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence IMP] [pmid 7929110]; go_process: regulation of cell redox homeostasis [goid GO:0030503] [evidence TAS] [pmid 11169096]; go_process: response to oxidative stress [goid GO:0006979] [evidence ISS] [pmid 1988444]; go_process: vacuole fusion, non-autophagic [goid GO:0042144] [evidence IDA] [pmid 9657146]; go_process: vacuole inheritance [goid GO:0000011] [evidence IMP] [pmid 8603912] --- --- --- --- --- --- S0004033 // TRX1 SGDID:S0004033, Chr XII from 232014-231703, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017854 // cdna:Genscan chromosome:SGD1:XII:231703:232014:-1 // ensembl // 11 // --- /// GENEFINDER00000024781 // cdna:GeneFinder chromosome:SGD1:XII:231703:232014:-1 // ensembl // 11 // --- /// YLR043C // cdna:known chromosome:SGD1:XII:231703:232014:-1 gene:YLR043C // ensembl // 11 // --- --- No cerevisiae_gene -1.17661838513287 -1.04314138000526 -1.20475174597779 -1.31782602450159 -1.05807461196497 Max fold change below threshold 4 1.31782602450159 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772893_at YJL019W.S1 Essential integral membrane protein required for spindle pole body duplication and for nuclear fusion, localizes to the spindle pole body half bridge, interacts with DnaJ-like chaperone Jem1p and with centrin homolog Cdc31p 1.31769062593901 154.318649291992 170.656311035156 MPS3 743 // nuclear migration during conjugation with cellular fusion // inferred from mutant phenotype /// 7064 // mitotic sister chromatid cohesion // inferred from mutant phenotype /// 7103 // spindle pole body duplication in nuclear envelope // inferred from mutant phenotype 5825 // half bridge of spindle pole body // inferred from direct assay /// 16021 // integral to membrane // inferred from direct assay --- 147.264099121094 129.065765380859 179.571533203125 194.048522949219 0.000244141003349796 0.000244141003349796 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL019W /GEN=MPS3 /DB_XREF=GI:27808709 /SEG=NC_001142:+402813,404861 /DEF=Essential integral membrane protein required for spindle pole body duplication and for nuclear fusion, localizes to the spindle pole body half bridge, interacts with DnaJ-like chaperone Jem1p and with centrin homolog Cdc31p /NOTE=Mps3p; go_component: half bridge of spindle pole body [goid GO:0005825] [evidence TAS] [pmid 12486115]; go_component: integral to membrane [goid GO:0016021] [evidence IDA] [pmid 12493774]; go_component: spindle pole body [goid GO:0005816] [evidence TAS] [pmid 12486115]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: nuclear migration during conjugation with cellular fusion [goid GO:0000743] [evidence IMP] [pmid 12493774]; go_process: spindle pole body duplication (sensu Saccharomyces) [goid GO:0007103] [evidence IMP] [pmid 12486115] --- --- --- --- --- S0003556 // span:153-175 // numtm:1 S0003556 // MPS3 SGDID:S0003556, Chr X from 402813-404861, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024267 // cdna:GeneFinder chromosome:SGD1:X:402813:404861:1 // ensembl // 11 // --- /// GENSCAN00000024122 // cdna:Genscan chromosome:SGD1:X:404352:404861:1 // ensembl // 10 // --- /// YJL019W // cdna:known chromosome:SGD1:X:402813:404861:1 gene:YJL019W // ensembl // 11 // --- --- No cerevisiae_gene 1.06914869807587 -1.14100047124451 1.05073245536778 1.21938431888593 1.31769062593901 Max fold change below threshold 4 1.31769062593901 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779197_at YIL027C.S1 Protein of unknown function; null mutant shows K1 killer toxin resistance 1.3166227141825 1270.4287109375 1230.41741943359 KRE27 --- 5783 // endoplasmic reticulum // inferred from direct assay --- 1196.05480957031 1207.04504394531 1333.81237792969 1264.78002929688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL027C /GEN=KRE27 /DB_XREF=GI:6322162 /SEG=NC_001141:-303677,304102 /DEF=Killer toxin REsistant /NOTE=Kre27p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001289 // span:7-29,49-68 // numtm:2 S0001289 // KRE27 SGDID:S0001289, Chr IX from 304102-303677, reverse complement, Verified ORF // sgd // 11 // --- /// YIL027C // cdna:known chromosome:SGD1:IX:303677:304102:-1 gene:YIL027C // ensembl // 11 // --- --- No cerevisiae_gene 1.25582907510154 1.00918873808045 1.3166227141825 1.11517663509824 1.05745992506084 Max fold change below threshold 4 1.3166227141825 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771958_at YKL124W.S1 Protein whose overexpression confers resistance to the growth inhibitor leflunomide; suppressor of shr3 mutation 1.31616661391763 539.290985107422 556.447845458984 SSH4 --- --- --- 528.209655761719 516.825317382813 561.756652832031 584.68603515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL124W /GEN=SSH4 /DB_XREF=GI:6322725 /SEG=NC_001143:+210239,211978 /DEF=Suppressor of SHR3; confers leflunomide resistance when overexpressed /NOTE=Ssh4p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001607 // span:47-69 // numtm:1 S0001607 // SSH4 SGDID:S0001607, Chr XI from 210239-211978, Verified ORF // sgd // 11 // --- /// GENSCAN00000018325 // cdna:Genscan chromosome:SGD1:XI:210239:211978:1 // ensembl // 11 // --- /// GENEFINDER00000023095 // cdna:GeneFinder chromosome:SGD1:XI:211031:211978:1 // ensembl // 11 // --- /// YKL124W // cdna:known chromosome:SGD1:XI:210239:211978:1 gene:YKL124W // ensembl // 11 // --- YKL123W // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene 1.00200769870122 -1.02202743943845 1.31616661391763 1.06351076074506 1.10692038431802 Max fold change below threshold 4 1.31616661391763 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777461_at YJR122W.S1 Mitochondrial protein that interacts with Ccr4p in the two-hybrid system; 3'-untranslated region contains a putative mRNA localization element common to genes encoding mitochondrial proteins 1.31605961345297 328.710922241211 346.68620300293 CAF17 --- 5739 // mitochondrion // inferred from direct assay --- 329.275360107422 349.301086425781 308.120758056641 364.097045898438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR122W /GEN=CAF17 /DB_XREF=GI:6322582 /SEG=NC_001142:+649691,651184 /DEF=CCR4 associated factor /NOTE=Caf17p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003883 // CAF17 SGDID:S0003883, Chr X from 649691-651184, Verified ORF // sgd // 11 // --- /// GENSCAN00000024228 // cdna:Genscan chromosome:SGD1:X:649691:651184:1 // ensembl // 11 // --- /// GENEFINDER00000024396 // cdna:GeneFinder chromosome:SGD1:X:650384:651184:1 // ensembl // 11 // --- /// YJR122W // cdna:known chromosome:SGD1:X:649691:651184:1 gene:YJR122W // ensembl // 11 // --- --- No cerevisiae_gene -1.31605961345297 1.06081756713234 1.25538228837794 -1.0686568544885 1.10575247956499 Max fold change below threshold 4 1.31605961345297 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779662_at YAL019W.S1 Protein whose overexpression affects chromosome stability, potential Cdc28p substrate; homolog of Snf2p 1.31587614585133 278.158905029297 341.267333984375 FUN30 7001 // chromosome organization and biogenesis (sensu Eukaryota) // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 335.349517822266 254.848846435547 301.468963623047 347.185150146484 0.000244141003349796 0.000244140625 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL019W /GEN=FUN30 /DB_XREF=GI:6319300 /SEG=NC_001133:+114922,118317 /DEF=Protein whose overexpression affects chromosome stability, potential Cdc28p substrate; homolog of Snf2p /NOTE=Fun30p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromosome organization and biogenesis (sensu Eukarya) [goid GO:0007001] [evidence IGI] [pmid 10454593] --- --- --- --- --- --- S0000017 // FUN30 SGDID:S0000017, Chr I from 114920-118315, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018206 // cdna:GeneFinder chromosome:SGD1:I:114920:118477:1 // ensembl // 11 // --- /// GENSCAN00000020363 // cdna:Genscan chromosome:SGD1:I:114920:118477:1 // ensembl // 11 // --- /// YAL019W // cdna:known chromosome:SGD1:I:114920:118315:1 gene:YAL019W // ensembl // 11 // --- --- No cerevisiae_gene -1.12605618366813 -1.31587614585133 1.07201812984263 -1.11238488298113 1.03529342281772 Max fold change below threshold 4 1.31587614585133 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776978_at YLR290C.S1 Hypothetical protein 1.31539950860905 1197.35791015625 1461.97875976563 --- --- 5739 // mitochondrion // inferred from direct assay --- 1373.14782714844 1043.90173339844 1350.81408691406 1550.80969238281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR290C /GEN=GUF1 /DB_XREF=GI:6323321 /SEG=NC_001144:-717147,717980 /DEF=Hypothetical ORF /NOTE=Ylr290cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004281 // YLR290C SGDID:S0004281, Chr XII from 717980-717147, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YLR290C // cdna:known chromosome:SGD1:XII:717147:717980:-1 gene:YLR290C // ensembl // 11 // --- --- No cerevisiae_gene -1.1822529427505 -1.31539950860905 -1.01293750631464 -1.01653354110735 1.12938291254724 Max fold change below threshold 4 1.31539950860905 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776783_at YDR177W.S1 Ubiquitin-conjugating enzyme that mediates selective degradation of short-lived and abnormal proteins; plays a role in vesicle biogenesis and ER-associated protein degradation (ERAD); component of the cellular stress response 1.31503004724371 2611.99548339844 2186.36340332031 UBC1 209 // protein polyubiquitination // traceable author statement /// 6513 // protein monoubiquitination // traceable author statement /// 6897 // endocytosis // traceable author statement /// 9847 // spore germination // traceable author statement 502 // proteasome complex (sensu Eukaryota) // inferred from physical interaction 4840 // ubiquitin conjugating enzyme activity // traceable author statement 2142.98754882813 2519.32348632813 2704.66748046875 2229.7392578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR177W /GEN=UBC1 /DB_XREF=GI:6320382 /SEG=NC_001136:+816872,817519 /DEF=Ubiquitin-conjugating enzyme that mediates selective degradation of short-lived and abnormal proteins; plays a role in vesicle biogenesis and ER-associated protein degradation (ERAD); component of the cellular stress response /NOTE=Ubc1p; go_component: proteasome complex (sensu Eukarya) [goid GO:0000502] [evidence IPI] [pmid 10848595]; go_function: ubiquitin conjugating enzyme activity [goid GO:0004840] [evidence TAS] [pmid 8982460]; go_process: endocytosis [goid GO:0006897] [evidence TAS] [pmid 8982460]; go_process: germination (sensu Saccharomyces) [goid GO:0007153] [evidence TAS] [pmid 8982460]; go_process: protein monoubiquitination [goid GO:0006513] [evidence TAS] [pmid 8982460]; go_process: protein polyubiquitination [goid GO:0000209] [evidence TAS] [pmid 8982460] --- --- --- --- --- --- S0002584 // UBC1 SGDID:S0002584, Chr IV from 816873-817520, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023844 // cdna:GeneFinder chromosome:SGD1:IV:816873:817520:1 // ensembl // 11 // --- /// GENSCAN00000025233 // cdna:Genscan chromosome:SGD1:IV:816894:817520:1 // ensembl // 11 // --- /// YDR177W // cdna:known chromosome:SGD1:IV:816873:817520:1 gene:YDR177W // ensembl // 11 // --- --- No cerevisiae_gene 1.08581871946302 1.17561275038943 1.31503004724371 1.26210135096108 1.04048166730218 Max fold change below threshold 4 1.31503004724371 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779864_at YDR483W.S1 Alpha1,2-mannosyltransferase of the Golgi involved in protein mannosylation 1.31496297150698 3807.8056640625 3780.65319824219 KRE2 32 // cell wall mannoprotein biosynthesis // inferred from mutant phenotype /// 6491 // N-glycan processing // inferred from mutant phenotype /// 6493 // O-linked glycosylation // inferred from mutant phenotype 5794 // Golgi apparatus // inferred from sequence similarity 26 // alpha-1,2-mannosyltransferase activity // inferred from sequence similarity /// 26 // alpha-1,2-mannosyltransferase activity // inferred from direct assay 4163.7958984375 4061.05444335938 3554.55688476563 3397.51049804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR483W /GEN=KRE2 /DB_XREF=GI:6320691 /SEG=NC_001136:+1421145,1422473 /DEF=N-glycosylation /NOTE=Kre2p; go_component: Golgi apparatus [goid GO:0005794] [evidence ISS] [pmid 1550992]; go_function: alpha-1,2-mannosyltransferase activity [goid GO:0000026] [evidence IDA,ISS] [pmid 1550992]; go_process: N-glycan processing [goid GO:0006491] [evidence IMP] [pmid 1495972]; go_process: O-linked glycosylation [goid GO:0006493] [evidence IMP] [pmid 1495972]; go_process: cell wall mannoprotein biosynthesis [goid GO:0000032] [evidence IMP] [pmid 1541391] --- --- --- --- --- --- S0002891 // KRE2 SGDID:S0002891, Chr IV from 1421147-1422475, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023559 // cdna:GeneFinder chromosome:SGD1:IV:1421147:1422475:1 // ensembl // 11 // --- /// GENSCAN00000025478 // cdna:Genscan chromosome:SGD1:IV:1421147:1422475:1 // ensembl // 11 // --- /// YDR483W // cdna:known chromosome:SGD1:IV:1421147:1422475:1 gene:YDR483W // ensembl // 11 // --- --- No cerevisiae_gene -1.31496297150698 -1.02529920652655 -1.15117410604993 -1.17139661381788 -1.22554320312804 Max fold change below threshold 4 1.31496297150698 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775957_at YLR412W.S1 Hypothetical protein 1.31473545833031 438.514312744141 455.13053894043 --- --- 5737 // cytoplasm // inferred from direct assay --- 468.632904052734 452.517913818359 424.510711669922 441.628173828125 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR412W /GEN=CTR3 /DB_XREF=GI:6323444 /SEG=NC_001144:+948365,949189 /DEF=Hypothetical ORF /NOTE=Ylr412wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004404 // YLR412W SGDID:S0004404, Chr XII from 948365-949189, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018131 // cdna:Genscan chromosome:SGD1:XII:948365:949189:1 // ensembl // 11 // --- /// YLR412W // cdna:known chromosome:SGD1:XII:948365:949189:1 gene:YLR412W // ensembl // 11 // --- --- No cerevisiae_gene -1.04739700802039 -1.03561182826641 1.31473545833031 -1.10393658197516 -1.06114811469234 Max fold change below threshold 4 1.31473545833031 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770548_at YMR279C.S1 Hypothetical protein 1.3146996246985 40.5153293609619 42.8351974487305 --- --- --- --- 43.3818778991699 32.99755859375 48.0331001281738 42.288516998291 0.000244141003349796 0.00122069998178631 0.00292969006113708 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR279C /GEN=FCP1 /DB_XREF=GI:6323935 /SEG=NC_001145:-824728,826350 /DEF=Hypothetical ORF /NOTE=Ymr279cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004892 // span:109-126,139-156,171-193,200-222,232-254,261-283,298-315,336-358,368-390,397-419,429-451,463-485,500-522 // numtm:13 S0004892 // YMR279C SGDID:S0004892, Chr XIII from 826350-824728, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018948 // cdna:Genscan chromosome:SGD1:XIII:824728:826350:-1 // ensembl // 11 // --- /// YMR279C // cdna:known chromosome:SGD1:XIII:824728:826350:-1 gene:YMR279C // ensembl // 11 // --- --- No cerevisiae_gene 1.08753630202653 -1.3146996246985 1.18163055684695 1.10721578811813 -1.02585479412586 Max fold change below threshold 4 1.3146996246985 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779364_at YBR147W.S1 Hypothetical protein 1.31461896744033 1714.11749267578 1459.34442138672 --- --- --- --- 1435.98645019531 1813.64306640625 1614.59191894531 1482.70239257813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR147W /GEN=MRPS9 /DB_XREF=GI:6319623 /SEG=NC_001134:+536531,537421 /DEF=Hypothetical ORF /NOTE=Ybr147wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0000351 // span:15-37,44-66,70-89,164-186,206-224,237-259,263-285 // numtm:7 S0000351 // YBR147W SGDID:S0000351, Chr II from 536569-537459, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022387 // cdna:GeneFinder chromosome:SGD1:II:536614:537459:1 // ensembl // 11 // --- /// YBR147W // cdna:known chromosome:SGD1:II:536569:537459:1 gene:YBR147W // ensembl // 11 // --- --- No cerevisiae_gene -1.17780055007274 1.26299455413355 1.31461896744033 1.1243782409825 1.03253230027098 Max fold change below threshold 4 1.31461896744033 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778274_at YEL004W.S1 Uridine diphosphate-N-acetylglucosamine (UDP-GlcNAc) transporter required for cell wall chitin synthesis; localized to the ER 1.31435036769369 260.355903625488 366.381134033203 YEA4 6038 // cell wall chitin biosynthesis // inferred from mutant phenotype /// 15788 // UDP-N-acetylglucosamine transport // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay 5462 // UDP-N-acetylglucosamine transporter activity // inferred from mutant phenotype /// 5462 // UDP-N-acetylglucosamine transporter activity // inferred from sequence similarity 333.188720703125 253.500686645508 267.211120605469 399.573547363281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL004W /GEN=YEA4 /DB_XREF=GI:6320833 /SEG=NC_001137:+146950,147978 /DEF=Shows sequence similarity to GOG5, a gene involved in vanadate resistance /NOTE=Yea4p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11278413]; go_function: UDP-N-acetylglucosamine transporter activity [goid GO:0005462] [evidence IMP,ISS] [pmid 11278413]; go_process: UDP-N-acetylglucosamine transport [goid GO:0015788] [evidence IMP] [pmid 11278413]; go_process: cell wall chitin biosynthesis [goid GO:0006038] [evidence IMP] [pmid 11278413] --- --- --- --- --- S0000730 // span:70-87,97-119,126-144,169-191,279-301,306-328 // numtm:6 S0000730 // YEA4 SGDID:S0000730, Chr V from 146950-147978, Verified ORF // sgd // 11 // --- /// YEL004W // cdna:known chromosome:SGD1:V:146950:147978:1 gene:YEL004W // ensembl // 11 // --- --- No cerevisiae_gene -1.08520419974211 -1.31435036769369 -1.0782333684517 -1.24691187982057 1.19924091824016 Max fold change below threshold 4 1.31435036769369 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776717_at YDR487C.S1 3,4-dihydroxy-2-butanone-4-phosphate synthase (DHBP synthase), required for riboflavin biosynthesis from ribulose-5-phosphate, also has an unrelated function in mitochondrial respiration 1.31414045455879 2479.1962890625 2672.88366699219 RIB3 9060 // aerobic respiration // inferred from mutant phenotype /// 9231 // riboflavin biosynthesis // inferred from mutant phenotype 5758 // mitochondrial intermembrane space // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 8686 // 3,4-dihydroxy-2-butanone-4-phosphate synthase activity // inferred from mutant phenotype 2763.1962890625 2471.70385742188 2486.68872070313 2582.57104492188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR487C /GEN=RIB3 /DB_XREF=GI:6320695 /SEG=NC_001136:-1428342,1428968 /DEF=Riboflavin biosynthesis /NOTE=Rib3p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 12595523]; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence IDA] [pmid 12595523]; go_function: 3,4 dihydroxy-2-butanone-4-phosphate synthase activity [goid GO:0008686] [evidence IMP] [pmid 7559556]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 12595523]; go_process: vitamin B2 biosynthesis [goid GO:0009231] [evidence IMP] [pmid 5366000] --- --- --- --- --- --- S0002895 // RIB3 SGDID:S0002895, Chr IV from 1428970-1428344, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023730 // cdna:GeneFinder chromosome:SGD1:IV:1428344:1428910:-1 // ensembl // 11 // --- /// GENSCAN00000025482 // cdna:Genscan chromosome:SGD1:IV:1428344:1428910:-1 // ensembl // 11 // --- /// YDR487C // cdna:known chromosome:SGD1:IV:1428344:1428970:-1 gene:YDR487C // ensembl // 11 // --- --- No cerevisiae_gene 1.31414045455879 -1.11793177842295 -1.2486497202797 -1.11119508688695 -1.06994008722269 Max fold change below threshold 4 1.31414045455879 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772222_at YMR208W.S1 Mevalonate kinase, acts in the biosynthesis of isoprenoids and sterols, including ergosterol, from mevalonate 1.31408558466759 1519.76098632813 1357.47448730469 ERG12 6696 // ergosterol biosynthesis // traceable author statement 5829 // cytosol // traceable author statement 4496 // mevalonate kinase activity // traceable author statement 1348.31701660156 1322.2099609375 1717.31201171875 1366.63195800781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR208W /GEN=ERG12 /DB_XREF=GI:6323864 /SEG=NC_001145:+684466,685797 /DEF=Mevalonate kinase, acts in the biosynthesis of isoprenoids and sterols, including ergosterol, from mevalonate /NOTE=Erg12p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: mevalonate kinase activity [goid GO:0004496] [evidence TAS]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence TAS] --- --- --- --- scop // a.4.5.Plant O-methyltransferase, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Plant O-methyltransferase, N-terminal domain // 1.60000002384186 --- S0004821 // ERG12 SGDID:S0004821, Chr XIII from 684466-685797, Verified ORF // sgd // 11 // --- /// GENSCAN00000018889 // cdna:Genscan chromosome:SGD1:XIII:684466:685797:1 // ensembl // 11 // --- /// GENEFINDER00000021848 // cdna:GeneFinder chromosome:SGD1:XIII:684466:685797:1 // ensembl // 11 // --- /// YMR208W // cdna:known chromosome:SGD1:XIII:684466:685797:1 gene:YMR208W // ensembl // 11 // --- --- No cerevisiae_gene -1.22004274684369 -1.01974501511511 1.31408558466759 1.27367079890992 1.0135835572649 Max fold change below threshold 4 1.31408558466759 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772164_at YBL014C.S1 involved in the transcription of 35S rRNA genes by RNA polymerase I; member of yeast Pol I core factor (CF) also composed of Rrn11p, Rrn7p and TATA-binding protein 1.31397877940748 388.650772094727 523.603424072266 RRN6 6360 // transcription from RNA polymerase I promoter // traceable author statement 120 // RNA polymerase I transcription factor complex // traceable author statement 3701 // RNA polymerase I transcription factor activity // traceable author statement 466.327331542969 422.404388427734 354.897155761719 580.879516601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL014C /GEN=RRN6 /DB_XREF=GI:6319457 /SEG=NC_001134:-199029,201713 /DEF=involved in the transcription of 35S rRNA genes by RNA polymerase I /NOTE=Rrn6p; go_component: RNA polymerase I transcription factor complex [goid GO:0000120] [evidence TAS] [pmid 9932458]; go_function: RNA polymerase I transcription factor activity [goid GO:0003701] [evidence TAS] [pmid 9932458]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS] [pmid 9932458] --- --- --- --- --- --- S0000110 // RRN6 SGDID:S0000110, Chr II from 201751-199067, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021127 // cdna:Genscan chromosome:SGD1:II:199067:201751:-1 // ensembl // 11 // --- /// GENEFINDER00000022172 // cdna:GeneFinder chromosome:SGD1:II:199067:201751:-1 // ensembl // 11 // --- /// YBL014C // cdna:known chromosome:SGD1:II:199067:201751:-1 gene:YBL014C // ensembl // 11 // --- --- No cerevisiae_gene 1.24891329628508 -1.10398316002048 -1.22126381019638 -1.31397877940748 1.24564758981544 Max fold change below threshold 4 1.31397877940748 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772204_at YER178W.S1 E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex, catalyzes the direct oxidative decarboxylation of pyruvate to acetyl-CoA, regulated by glucose 1.31387520818368 5681.39306640625 5056.17895507813 PDA1 6090 // pyruvate metabolism // non-traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5967 // pyruvate dehydrogenase complex (sensu Eukaryota) // traceable author statement /// 42645 // mitochondrial nucleoid // inferred from direct assay 4739 // pyruvate dehydrogenase (acetyl-transferring) activity // inferred from mutant phenotype /// 4739 // pyruvate dehydrogenase (acetyl-transferring) activity // traceable author statement 5646.27734375 6345.6533203125 5017.1328125 4466.08056640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER178W /GEN=PDA1 /DB_XREF=GI:37362644 /SEG=NC_001137:+546812,548074 /DEF=alpha subunit of pyruvate dehydrogenase (E1 alpha) /NOTE=Pda1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 7589446]; go_component: pyruvate dehydrogenase complex (sensu Eukarya) [goid GO:0005967] [evidence TAS] [pmid 9123965]; go_function: pyruvate dehydrogenase (acetyl-transferring) activity [goid GO:0004739] [evidence IMP,TAS] [pmid 11589696]; go_process: pyruvate metabolism [goid GO:0006090] [evidence NAS] [pmid 11752249] --- --- --- --- --- --- S0000980 // PDA1 SGDID:S0000980, Chr V from 546812-548074, Verified ORF // sgd // 11 // --- /// M29582 // S.cerevisiae pyruvate dehydrogenase, alpha subunit mRNA, complete cds. // gb // 9 // --- /// GENSCAN00000016957 // cdna:Genscan chromosome:SGD1:V:546812:548074:1 // ensembl // 11 // --- /// GENEFINDER00000019736 // cdna:GeneFinder chromosome:SGD1:V:546812:548074:1 // ensembl // 11 // --- /// YER178W // cdna:known chromosome:SGD1:V:546812:548074:1 gene:YER178W // ensembl // 11 // --- --- No cerevisiae_gene -1.31387520818368 1.1238649704901 -1.17583411630243 -1.1253992179921 -1.26425783408861 Max fold change below threshold 4 1.31387520818368 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775928_at YDR226W.S1 Adenylate kinase, required for purine metabolism; localized to the cytoplasm and the mitochondria; lacks cleavable signal sequence 1.31369446227872 2710.48413085938 3083.80603027344 ADK1 6172 // ADP biosynthesis // inferred from direct assay /// 9117 // nucleotide metabolism // inferred from mutant phenotype 5737 // cytoplasm // traceable author statement /// 5758 // mitochondrial intermembrane space // traceable author statement 4017 // adenylate kinase activity // traceable author statement 3241.06127929688 2467.134765625 2953.83349609375 2926.55078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR226W /GEN=ADK1 /DB_XREF=GI:6320432 /SEG=NC_001136:+916478,917146 /DEF=adenylate kinase /NOTE=Adk1p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 12045196]; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence TAS] [pmid 12045196]; go_function: adenylate kinase activity [goid GO:0004017] [evidence TAS] [pmid 12045196]; go_process: cell proliferation [goid GO:0008283] [evidence IMP] [pmid 2848829] --- --- --- --- --- --- S0002634 // ADK1 SGDID:S0002634, Chr IV from 916480-917148, Verified ORF // sgd // 11 // --- /// Y00413 // Yeast mRNA for adenylate kinase (EC 2.7.4.3). // gb // 10 // --- /// GENEFINDER00000023926 // cdna:GeneFinder chromosome:SGD1:IV:916480:917148:1 // ensembl // 11 // --- /// GENSCAN00000025274 // cdna:Genscan chromosome:SGD1:IV:916480:917148:1 // ensembl // 11 // --- /// YDR226W // cdna:known chromosome:SGD1:IV:916480:917148:1 gene:YDR226W // ensembl // 11 // --- --- No cerevisiae_gene 1.21883640755633 -1.31369446227872 -1.27033768083962 -1.0972389891248 -1.10746797904957 Max fold change below threshold 4 1.31369446227872 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771349_at YMR037C.S1 Transcriptional activator related to Msn4p; activated in stress conditions, which results in translocation from the cytoplasm to the nucleus; binds DNA at stress response elements of responsive genes, inducing gene expression 1.31188093295243 1460.97723388672 1340.11090087891 MSN2 1302 // replicative cell aging // inferred from mutant phenotype /// 1324 // age-dependent response to oxidative stress during chronological cell aging // inferred from mutant phenotype /// 6355 // regulation of transcription, DNA-dependent // traceable author statement /// 6950 // response to stress // inferred from mutant phenotype /// 6950 // response to stress // traceable author statement 5634 // nucleus // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 3677 // DNA binding // traceable author statement /// 3677 // DNA binding // inferred from direct assay /// 3700 // transcription factor activity // traceable author statement 1304.92883300781 1428.83679199219 1493.11767578125 1375.29296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR037C /GEN=MSN2 /DB_XREF=GI:6323680 /SEG=NC_001145:-344402,346516 /DEF=Transcription factor. Multicopy suppressor of snf1 mutation. Key regulator of stress-responsive gene expression. /NOTE=Msn2p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 12093809]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9472026]; go_function: DNA binding [goid GO:0003677] [evidence TAS] [pmid 12395196]; go_function: transcription factor activity [goid GO:0003700] [evidence TAS] [pmid 11058591]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence TAS] [pmid 12090248]; go_process: response to stress [goid GO:0006950] [evidence IMP,TAS] [pmid 11102521] --- --- --- --- --- --- S0004640 // MSN2 SGDID:S0004640, Chr XIII from 346516-344402, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018746 // cdna:Genscan chromosome:SGD1:XIII:344402:346516:-1 // ensembl // 11 // --- /// GENEFINDER00000021956 // cdna:GeneFinder chromosome:SGD1:XIII:344402:346516:-1 // ensembl // 11 // --- /// YMR037C // cdna:known chromosome:SGD1:XIII:344402:346516:-1 gene:YMR037C // ensembl // 11 // --- --- No cerevisiae_gene 1.07675329890794 1.09495380579397 1.31188093295243 1.144213874361 1.05392181854086 Max fold change below threshold 4 1.31188093295243 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769854_at YDR223W.S1 Transcriptional corepressor involved in the regulation of ribosomal protein gene transcription via the TOR signaling pathway and protein kinase A, phosphorylated by activated Yak1p which promotes accumulation of Crf1p in the nucleus 1.31174860143321 177.477172851563 230.85807800293 CRF1 16481 // negative regulation of transcription // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 16564 // transcriptional repressor activity // inferred from direct assay 218.773910522461 176.561813354492 178.392532348633 242.942245483398 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR223W /GEN=SPR28 /DB_XREF=GI:6320429 /SEG=NC_001136:+912091,913494 /DEF=Protein of unknown function, potentially phosphorylated by Cdc28p /NOTE=Ydr223wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002631 // CRF1 SGDID:S0002631, Chr IV from 912093-913496, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023746 // cdna:GeneFinder chromosome:SGD1:IV:912093:913496:1 // ensembl // 11 // --- /// GENSCAN00000025271 // cdna:Genscan chromosome:SGD1:IV:912750:913496:1 // ensembl // 11 // --- /// YDR223W // cdna:known chromosome:SGD1:IV:912093:913496:1 gene:YDR223W // ensembl // 11 // --- --- No cerevisiae_gene -1.31174860143321 -1.23907829425844 1.25976869018293 -1.22636249198431 1.11047174182342 Max fold change below threshold 4 1.31174860143321 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777843_at YPR113W.S1 Phosphatidylinositol synthase, required for biosynthesis of phosphatidylinositol, which is a precursor for polyphosphoinositides, sphingolipids, and glycolipid anchors for some of the plasma membrane proteins 1.31126564268296 3790.27612304688 3042.3154296875 PIS1 6661 // phosphatidylinositol biosynthesis // traceable author statement /// 6661 // phosphatidylinositol biosynthesis // inferred from mutant phenotype /// 7049 // cell cycle // inferred from mutant phenotype 5741 // mitochondrial outer membrane // inferred from direct assay /// 5783 // endoplasmic reticulum // traceable author statement /// 5792 // microsome // inferred from direct assay 3881 // CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity // traceable author statement /// 3881 // CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity // inferred from mutant phenotype 3153.50146484375 3886.810546875 3693.74169921875 2931.12939453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR113W /GEN=PIS1 /DB_XREF=GI:6325370 /SEG=NC_001148:+752253,752915 /DEF=phosphatidylinositol synthase /NOTE=Pis1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS]; go_function: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity [goid GO:0003881] [evidence TAS]; go_process: phosphatidylinositol biosynthesis [goid GO:0006661] [evidence TAS] --- --- --- --- --- S0006317 // span:15-37,87-109,149-171 // numtm:3 S0006317 // PIS1 SGDID:S0006317, Chr XVI from 752255-752917, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020856 // cdna:GeneFinder chromosome:SGD1:XVI:752255:752917:1 // ensembl // 11 // --- /// YPR113W // cdna:known chromosome:SGD1:XVI:752255:752917:1 gene:YPR113W // ensembl // 11 // --- --- No cerevisiae_gene 1.31126564268296 1.23253805022969 1.15251183309228 1.17131440730178 -1.07586566145029 Max fold change below threshold 4 1.31126564268296 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778374_at YBL086C.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery 1.31116654326292 841.004913330078 703.660095214844 --- --- --- --- 688.149658203125 779.731018066406 902.27880859375 719.170532226563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL086C /GEN=RPL23A /DB_XREF=GI:6319385 /SEG=NC_001134:-61199,62599 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery /NOTE=Ybl086cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000182 // YBL086C SGDID:S0000182, Chr II from 62599-61199, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000021072 // cdna:Genscan chromosome:SGD1:II:61199:62599:-1 // ensembl // 10 // --- /// GENEFINDER00000022124 // cdna:GeneFinder chromosome:SGD1:II:61199:62599:-1 // ensembl // 10 // --- /// YBL086C // cdna:known chromosome:SGD1:II:61199:62599:-1 gene:YBL086C // ensembl // 10 // --- --- No cerevisiae_gene -1.08622039438126 1.133083492481 1.07879645689922 1.31116654326292 1.04507867388097 Max fold change below threshold 4 1.31116654326292 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771961_at YPR111W.S1 Ser/Thr kinase involved in late nuclear division, one of the mitotic exit network (MEN) proteins; necessary for the execution of cytokinesis 1.31115532350791 456.986602783203 468.877090454102 DBF20 6468 // protein amino acid phosphorylation // inferred from direct assay /// 7049 // cell cycle // inferred from genetic interaction /// 7049 // cell cycle // inferred from expression pattern 5737 // cytoplasm // inferred from direct assay 4674 // protein serine/threonine kinase activity // inferred from direct assay 437.434020996094 410.794525146484 503.178680419922 500.320159912109 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR111W /GEN=DBF20 /DB_XREF=GI:6325368 /SEG=NC_001148:+747302,748996 /DEF=kinase required for late nuclear division /NOTE=Dbf20p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein serine/threonine kinase activity [goid GO:0004674] [evidence IDA] [pmid 8131744]; go_process: cell cycle [goid GO:0007049] [evidence IEP,IGI] [pmid 8131744]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 8131744] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 6.0E-62 /// hanks // 1.7.2 // AGC group; AGC VII Budding yeast DBF2/20; DBF20 // 1.0E-153 --- --- S0006315 // DBF20 SGDID:S0006315, Chr XVI from 747304-748998, Verified ORF // sgd // 11 // --- /// GENSCAN00000017266 // cdna:Genscan chromosome:SGD1:XVI:747304:748998:1 // ensembl // 11 // --- /// GENEFINDER00000020937 // cdna:GeneFinder chromosome:SGD1:XVI:748369:748998:1 // ensembl // 11 // --- /// YPR111W // cdna:known chromosome:SGD1:XVI:747304:748998:1 gene:YPR111W // ensembl // 11 // --- --- No cerevisiae_gene 1.20760957393268 -1.0648487119932 1.31115532350791 1.15029617329288 1.14376142663256 Max fold change below threshold 4 1.31115532350791 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771417_at YER136W.S1 GDP dissociation inhibitor, regulates vesicle traffic in secretory pathways by regulating the dissociation of GDP from the Sec4/Ypt/rab family of GTP binding proteins 1.3108250943047 2589.75537109375 2854.99682617188 GDI1 16192 // vesicle-mediated transport // inferred from mutant phenotype 5624 // membrane fraction // inferred from direct assay /// 5625 // soluble fraction // inferred from direct assay 5093 // Rab GDP-dissociation inhibitor activity // inferred from direct assay 3008.36279296875 2884.49609375 2295.0146484375 2701.630859375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER136W /GEN=GDI1 /DB_XREF=GI:6320983 /SEG=NC_001137:+439612,440967 /DEF=Regulates vesicle traffic in secretory pathway by regulating dissociation of GDP from Sec4/Ypt/rab family of GTP-binding proteins /NOTE=Gdi1p; go_component: membrane fraction [goid GO:0005624] [evidence IDA] [pmid 10329679]; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 10329679]; go_function: RAB GDP-dissociation inhibitor activity [goid GO:0005093] [evidence IDA] [pmid 8157010]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IMP] [pmid 8157010] --- --- --- --- --- --- S0000938 // GDI1 SGDID:S0000938, Chr V from 439612-440967, Verified ORF // sgd // 11 // --- /// GENSCAN00000016915 // cdna:Genscan chromosome:SGD1:V:439612:440967:1 // ensembl // 11 // --- /// GENEFINDER00000019575 // cdna:GeneFinder chromosome:SGD1:V:439612:440967:1 // ensembl // 11 // --- /// YER136W // cdna:known chromosome:SGD1:V:439612:440967:1 gene:YER136W // ensembl // 11 // --- --- No cerevisiae_gene -1.17306849428786 -1.04294223156937 1.02378972223751 -1.3108250943047 -1.11353584170441 Max fold change below threshold 4 1.3108250943047 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775546_at YDL114W.S1 Hypothetical protein 1.31079118908932 43.5913715362549 41.4143180847168 --- --- --- --- 41.4859352111816 45.1310882568359 42.0516548156738 41.342700958252 0.000244141003349796 0.000244141003349796 0.00195312988944352 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL114W /GEN=IWR1 /DB_XREF=GI:6320089 /SEG=NC_001136:+255604,256530 /DEF=Hypothetical ORF /NOTE=Ydl114wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002272 // YDL114W SGDID:S0002272, Chr IV from 255604-256530, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025012 // cdna:Genscan chromosome:SGD1:IV:255604:256530:1 // ensembl // 11 // --- /// YDL114W // cdna:known chromosome:SGD1:IV:255604:256530:1 gene:YDL114W // ensembl // 11 // --- --- No cerevisiae_gene 1.31079118908932 1.0878647914552 1.16212433527054 1.01363641922527 -1.00346455963471 Max fold change below threshold 4 1.31079118908932 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778992_at YGR186W.S1 Largest subunit of the RNA Polymerase general transcription factor IIF (TFIIF), interacts with Fcp1p phosphatase and with TFIIB; potentially phosphorylated by Cdc28p 1.31070028718084 1764.14379882813 1453.33044433594 TFG1 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement 5674 // transcription factor TFIIF complex // traceable author statement 16251 // general RNA polymerase II transcription factor activity // traceable author statement 1406.66516113281 1684.57116699219 1843.71643066406 1499.99572753906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR186W /GEN=TFG1 /DB_XREF=GI:6321625 /SEG=NC_001139:+867777,869984 /DEF=Largest subunit of the RNA Polymerase general transcription factor IIF (TFIIF), interacts with Fcp1p phosphatase and with TFIIB; potentially phosphorylated by Cdc28p /NOTE=Tfg1p; go_component: transcription factor TFIIF complex [goid GO:0005674] [evidence TAS] [pmid 9774381]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9774381]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 10384286] --- --- --- --- --- --- S0003418 // TFG1 SGDID:S0003418, Chr VII from 867779-869986, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021473 // cdna:GeneFinder chromosome:SGD1:VII:867779:869986:1 // ensembl // 11 // --- /// GENSCAN00000019486 // cdna:Genscan chromosome:SGD1:VII:868322:869986:1 // ensembl // 11 // --- /// YGR186W // cdna:known chromosome:SGD1:VII:867779:869986:1 gene:YGR186W // ensembl // 11 // --- --- No cerevisiae_gene -1.20027862827395 1.19756372272387 1.03292031579913 1.31070028718084 1.06634881490282 Max fold change below threshold 4 1.31070028718084 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777963_at YNL085W.S1 Protein involved in propagation of M2 dsRNA satellite of L-A virus; forms a complex with Pbp1p that is involved in posttranscriptional regulation of HO endonuclease 1.31068204346953 852.328552246094 1089.24371337891 MKT1 16032 // viral life cycle // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5844 // polysome // inferred from direct assay 4518 // nuclease activity // inferred from sequence similarity 1014.67309570313 774.156555175781 930.500549316406 1163.81433105469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL085W /GEN=MKT1 /DB_XREF=GI:6324244 /SEG=NC_001146:+467131,469623 /DEF=Protein involved in propagation of M2 dsRNA satellite of L-A virus /NOTE=Mkt1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: viral life cycle [goid GO:0016032] [evidence IMP] [pmid 7532890] --- --- --- --- --- --- S0005029 // MKT1 SGDID:S0005029, Chr XIV from 467131-469623, Verified ORF // sgd // 11 // --- /// GENSCAN00000019964 // cdna:Genscan chromosome:SGD1:XIV:467131:469623:1 // ensembl // 11 // --- /// YNL085W // cdna:known chromosome:SGD1:XIV:467131:469623:1 gene:YNL085W // ensembl // 11 // --- GENEFINDER00000020667 // ensembl // 2 // Cross Hyb Matching Probes No cerevisiae_gene 1.07975275384309 -1.31068204346953 1.23519351430584 -1.09045942686284 1.14698451745999 Max fold change below threshold 4 1.31068204346953 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777691_at YOR265W.S1 Protein involved in microtubule morphogenesis, required for protection from excess free beta-tubulin; proposed to be involved the folding of beta-tubulin 1.30984305386418 677.609405517578 916.247283935547 RBL2 226 // microtubule cytoskeleton organization and biogenesis // inferred from mutant phenotype /// 7023 // post-chaperonin tubulin folding pathway // traceable author statement /// 7025 // beta-tubulin folding // traceable author statement 5737 // cytoplasm // inferred from direct assay 15631 // tubulin binding // inferred from direct assay /// 48487 // beta-tubulin binding // inferred from mutant phenotype 877.527770996094 685.27001953125 669.948791503906 954.966796875 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR265W /GEN=RBL2 /DB_XREF=GI:6324839 /SEG=NC_001147:+820451,820771 /DEF=binds to beta-tubulin and may participate in microtubule morphogenesis /NOTE=Rbl2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: co-chaperone activity [goid GO:0003767] [evidence TAS] [pmid 10542094]; go_function: tubulin binding [goid GO:0015631] [evidence IDA] [pmid 11739729]; go_process: beta-tubulin folding [goid GO:0007025] [evidence TAS] [pmid 10542094]; go_process: post-chaperonin tubulin folding pathway [goid GO:0007023] [evidence TAS] [pmid 10542094] --- --- --- --- --- --- S0005791 // RBL2 SGDID:S0005791, Chr XV from 820451-820771, Verified ORF // sgd // 10 // --- /// GENSCAN00000017695 // cdna:Genscan chromosome:SGD1:XV:820451:820771:1 // ensembl // 10 // --- /// GENEFINDER00000022743 // cdna:GeneFinder chromosome:SGD1:XV:820451:820771:1 // ensembl // 10 // --- /// YOR265W // cdna:known chromosome:SGD1:XV:820451:820771:1 gene:YOR265W // ensembl // 10 // --- --- No cerevisiae_gene -1.20765638938214 -1.28055765754404 1.08817384766316 -1.30984305386418 1.08824680931864 Max fold change below threshold 4 1.30984305386418 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778737_at YER025W.S1 Gamma subunit of the translation initiation factor eIF2, involved in the identification of the start codon; binds GTP when forming the ternary complex with GTP and tRNAi-Met 1.30979033542472 3220.32080078125 2798.63110351563 GCD11 6413 // translational initiation // traceable author statement 5840 // ribosome // traceable author statement /// 5850 // eukaryotic translation initiation factor 2 complex // inferred from mutant phenotype /// 5850 // eukaryotic translation initiation factor 2 complex // inferred from sequence similarity 3743 // translation initiation factor activity // traceable author statement 2859.17529296875 3153.55810546875 3287.08349609375 2738.0869140625 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER025W /GEN=GCD11 /DB_XREF=GI:6320863 /SEG=NC_001137:+205250,206833 /DEF=Gamma subunit of the translation initiation factor eIF2, involved in the identification of the start codon; binds GTP when forming the ternary complex with GTP and tRNAi-Met /NOTE=Gcd11p; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 9841679]; go_function: translation initiation factor activity [goid GO:0003743] [evidence TAS] [pmid 9841679]; go_process: translational initiation [goid GO:0006413] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0000827 // GCD11 SGDID:S0000827, Chr V from 205250-206833, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019704 // cdna:GeneFinder chromosome:SGD1:V:205250:207155:1 // ensembl // 10 // --- /// GENSCAN00000016827 // cdna:Genscan chromosome:SGD1:V:205859:206833:1 // ensembl // 11 // --- /// YER025W // cdna:known chromosome:SGD1:V:205250:206833:1 gene:YER025W // ensembl // 11 // --- --- No cerevisiae_gene 1.30979033542472 1.10296074298905 -1.1432069174316 1.14966140907041 -1.04422371630512 Max fold change below threshold 4 1.30979033542472 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778097_at YNL135C.S1 Peptidyl-prolyl cis-trans isomerase (PPIase), binds to the drugs FK506 and rapamycin; also binds to the nonhistone chromatin binding protein Hmo1p and may regulate its assembly or function 1.3094717690503 6830.45361328125 5487.79296875 FPR1 42255 // ribosome assembly // RCA 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3755 // peptidyl-prolyl cis-trans isomerase activity // inferred from sequence similarity /// 3755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay 6181.20263671875 8094.1103515625 5566.796875 4794.38330078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL135C /GEN=FPR1 /DB_XREF=GI:6324194 /SEG=NC_001146:-371882,372226 /DEF=Peptidyl-prolyl cis-trans isomerase (PPIase), binds to the drugs FK506 and rapamycin; also binds to the nonhistone chromatin binding protein Hmo1p and may regulate its assembly or function /NOTE=Fpr1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: peptidyl-prolyl cis-trans isomerase activity [goid GO:0003755] [evidence ISS] [pmid 1705713]; go_function: peptidyl-prolyl cis-trans isomerase activity [goid GO:0003755] [evidence IDA] [pmid 1996117]; go_process: ribosome assembly [goid GO:0042255] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0005079 // FPR1 SGDID:S0005079, Chr XIV from 372226-371882, reverse complement, Verified ORF // sgd // 11 // --- /// M63892 // S.cerevisiae rapamycin-binding protein (RBP1) mRNA, complete cds. // gb // 11 // --- /// GENEFINDER00000020522 // cdna:GeneFinder chromosome:SGD1:XIV:371882:372226:-1 // ensembl // 11 // --- /// YNL135C // cdna:known chromosome:SGD1:XIV:371882:372226:-1 gene:YNL135C // ensembl // 11 // --- --- No cerevisiae_gene -1.1307493433418 1.3094717690503 -1.28410699499396 -1.11036971089748 -1.28925917035284 Max fold change below threshold 4 1.3094717690503 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779274_at YOR259C.S1 One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates; required for spindle pole body duplication; localized mainly to the nucleus throughout the cell cycle 1.30915212174251 2975.99304199219 2695.94165039063 RPT4 6511 // ubiquitin-dependent protein catabolism // traceable author statement 5634 // nucleus // inferred from direct assay /// 8540 // proteasome regulatory particle, base subcomplex (sensu Eukaryota) // inferred from direct assay /// 8540 // proteasome regulatory particle, base subcomplex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement /// 16887 // ATPase activity // traceable author statement /// 16887 // ATPase activity // inferred from direct assay 2606.16650390625 2540.11767578125 3411.86840820313 2785.716796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR259C /GEN=RPT4 /DB_XREF=GI:6324833 /SEG=NC_001147:-812393,813706 /DEF=Proteasome Cap Subunit /NOTE=Rpt4p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10419517]; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence TAS] [pmid 9697412]; go_component: proteasome regulatory particle, base subcomplex (sensu Eukarya) [goid GO:0008540] [evidence IDA] [pmid 11742986]; go_function: ATPase activity [goid GO:0016887] [evidence TAS] [pmid 9697412]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 9697412]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 9697412] --- --- --- --- --- --- S0005785 // RPT4 SGDID:S0005785, Chr XV from 813706-812393, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017689 // cdna:Genscan chromosome:SGD1:XV:812393:813706:-1 // ensembl // 11 // --- /// GENEFINDER00000022604 // cdna:GeneFinder chromosome:SGD1:XV:812393:813706:-1 // ensembl // 11 // --- /// YOR259C // cdna:known chromosome:SGD1:XV:812393:813706:-1 gene:YOR259C // ensembl // 11 // --- --- No cerevisiae_gene -1.20364107678543 -1.02600227097931 -1.08319406367257 1.30915212174251 1.06889440590217 Max fold change below threshold 4 1.30915212174251 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772162_at YGR015C.S1 Hypothetical protein 1.30911756276348 308.091445922852 399.458923339844 --- --- 5739 // mitochondrion // inferred from direct assay --- 388.214202880859 319.636413574219 296.546478271484 410.703643798828 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR015C /GEN=MSB2 /DB_XREF=GI:6321452 /SEG=NC_001139:-521092,522078 /DEF=Hypothetical ORF /NOTE=Ygr015cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003247 // YGR015C SGDID:S0003247, Chr VII from 522080-521094, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019353 // cdna:Genscan chromosome:SGD1:VII:521094:522080:-1 // ensembl // 11 // --- /// YGR015C // cdna:known chromosome:SGD1:VII:521094:522080:-1 gene:YGR015C // ensembl // 11 // --- --- No cerevisiae_gene -1.00829702785875 -1.21454936419726 1.12729334314283 -1.30911756276348 1.05793049494604 Max fold change below threshold 4 1.30911756276348 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774116_at YIL003W.S1 Highly conserved, putative P-loop ATPase localized in the cytoplasm; has a potential role in assembly of iron-sulfur clusters in proteins 1.30903021317021 680.249786376953 925.460662841797 CFD1 16226 // iron-sulfur cluster assembly // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 16887 // ATPase activity // traceable author statement 881.904296875 686.791442871094 673.708129882813 969.017028808594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL003W /GEN=CFD1 /DB_XREF=GI:6322188 /SEG=NC_001141:+349119,350000 /DEF=Highly conserved, putative P-loop ATPase localized in the cytoplasm; has a potential role in assembly of iron-sulfur clusters in proteins /NOTE=Cfd1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12970194]; go_function: ATPase activity [goid GO:0016887] [evidence TAS] [pmid 12970194]; go_process: iron-sulfur cluster assembly [goid GO:0016226] [evidence IMP] [pmid 12970194] --- --- --- --- --- --- S0001265 // CFD1 SGDID:S0001265, Chr IX from 349119-350000, Verified ORF // sgd // 11 // --- /// GENSCAN00000016473 // cdna:Genscan chromosome:SGD1:IX:349119:350000:1 // ensembl // 11 // --- /// GENEFINDER00000019136 // cdna:GeneFinder chromosome:SGD1:IX:349251:350000:1 // ensembl // 11 // --- /// YIL003W // cdna:known chromosome:SGD1:IX:349119:350000:1 gene:YIL003W // ensembl // 11 // --- --- No cerevisiae_gene -1.02373538661578 -1.28409330959082 -1.02866519892001 -1.30903021317021 1.09877798786362 Max fold change below threshold 4 1.30903021317021 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774237_at YJR072C.S1 Cytoplasmic protein required for cell viability, identified by association with pre-ribosomal particles 1.30862936297322 583.654418945313 647.554718017578 NPA3 9060 // aerobic respiration // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay 5515 // protein binding // inferred from physical interaction 640.246276855469 489.24951171875 678.059326171875 654.863159179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR072C /GEN=LIA1 /DB_XREF=GI:6322532 /SEG=NC_001142:-570881,572038 /DEF=Protein required for cell viability /NOTE=Yjr072cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: aerobic respiration [goid GO:0009060] [evidence IPI] [pmid 14690591] --- --- --- --- --- --- S0003833 // NPA3 SGDID:S0003833, Chr X from 572038-570881, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024330 // cdna:GeneFinder chromosome:SGD1:X:570881:572038:-1 // ensembl // 11 // --- /// YJR072C // cdna:known chromosome:SGD1:X:570881:572038:-1 gene:YJR072C // ensembl // 11 // --- GENSCAN00000024190 // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene 1.26536285980803 -1.30862936297322 -1.08992119061203 1.05906016275819 1.02283009343843 Max fold change below threshold 4 1.30862936297322 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771266_at YER036C.S1 ATPase of the ATP-binding cassette (ABC) family involved in ribosome biogenesis, has similarity to Gcn20p 1.30841783083925 3782.70568847656 3024.74609375 --- --- 5737 // cytoplasm // inferred from direct assay 42626 // ATPase activity, coupled to transmembrane movement of substances // inferred from sequence similarity 3166.00024414063 4142.451171875 3422.96020507813 2883.49194335938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER036C /GEN=EDC2 /DB_XREF=GI:6320874 /SEG=NC_001137:-223366,225198 /DEF=Hypothetical ORF /NOTE=Yer036cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: ATP-binding cassette (ABC) transporter activity [goid GO:0004009] [evidence ISS] [pmid 9020838]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000838 // YER036C SGDID:S0000838, Chr V from 225198-223366, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016835 // cdna:Genscan chromosome:SGD1:V:223366:225198:-1 // ensembl // 11 // --- /// GENEFINDER00000019676 // cdna:GeneFinder chromosome:SGD1:V:223366:225198:-1 // ensembl // 11 // --- /// YER036C // cdna:known chromosome:SGD1:V:223366:225198:-1 gene:YER036C // ensembl // 11 // --- --- No cerevisiae_gene 1.20577174303052 1.30841783083925 -1.15257888111137 1.0811623313716 -1.09797436799914 Max fold change below threshold 4 1.30841783083925 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776797_at YNL138W.S1 CAP (cyclase-associated protein) subunit of adenylyl cyclase complex; N-terminus binds adenylyl cyclase and facilitates activation by RAS; C-terminus binds ADP-actin monomers, facilitating regulation of actin dynamics and cell morphogenesis 1.30786784444586 3106.02270507813 2362.01245117188 SRV2 7010 // cytoskeleton organization and biogenesis // traceable author statement /// 7265 // Ras protein signal transduction // inferred from mutant phenotype 30479 // actin cortical patch // traceable author statement 8092 // cytoskeletal protein binding // traceable author statement /// 8179 // adenylate cyclase binding // traceable author statement 2459.08276367188 3216.1552734375 2995.89013671875 2264.94213867188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL138W /GEN=SRV2 /DB_XREF=GI:6324191 /SEG=NC_001146:+366741,368321 /DEF=N-terminal domain appears to be involved in cellular responsiveness to RAS. /NOTE=Srv2p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence TAS] [pmid 9190214]; go_function: adenylate cyclase binding [goid GO:0008179] [evidence TAS] [pmid 8552082]; go_function: cytoskeletal protein binding [goid GO:0008092] [evidence TAS] [pmid 8552082]; go_process: RAS protein signal transduction [goid GO:0007265] [evidence IMP] [pmid 9774417]; go_process: cytoskeleton organization and biogenesis [goid GO:0007010] [evidence TAS] [pmid 8552082] --- --- --- --- --- --- S0005082 // SRV2 SGDID:S0005082, Chr XIV from 366741-368321, Verified ORF // sgd // 11 // --- /// M58284 // Saccharomyces cerevisiae cyclase associated protein mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000019924 // cdna:Genscan chromosome:SGD1:XIV:366741:368321:1 // ensembl // 11 // --- /// GENEFINDER00000020491 // cdna:GeneFinder chromosome:SGD1:XIV:366741:368321:1 // ensembl // 11 // --- /// YNL138W // cdna:known chromosome:SGD1:XIV:366741:368321:1 gene:YNL138W // ensembl // 11 // --- --- No cerevisiae_gene 1.02727780054074 1.30786784444586 1.01342906950804 1.21829577311392 -1.08571548989496 Max fold change below threshold 4 1.30786784444586 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775638_at YPR161C.S1 Cyclin (Bur2p)-dependent protein kinase that functions in transcriptional regulation; phosphorylates the carboxy-terminal domain of Rpo21p, which is the largest subunit of RNA polymerase II; regulated by Cak1p 1.30776998122693 374.337768554688 341.404998779297 SGV1 6350 // transcription // inferred from direct assay /// 6350 // transcription // inferred from mutant phenotype /// 6350 // transcription // inferred from physical interaction /// 6468 // protein amino acid phosphorylation // inferred from direct assay /// 6468 // protein amino acid phosphorylation // inferred from physical interaction 5634 // nucleus // inferred from physical interaction 4693 // cyclin-dependent protein kinase activity // inferred from direct assay /// 4693 // cyclin-dependent protein kinase activity // inferred from physical interaction 325.982330322266 322.365631103516 426.309906005859 356.827667236328 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR161C /GEN=SGV1 /DB_XREF=GI:6325419 /SEG=NC_001148:-864443,866416 /DEF=CDC28/cdc2 related protein kinase /NOTE=Sgv1p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 11390638]; go_function: cyclin-dependent protein kinase activity [goid GO:0004693] [evidence IDA,IPI] [pmid 10982824]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA,IPI] [pmid 10982824]; go_process: transcription [goid GO:0006350] [evidence IDA,IMP,IPI] [pmid 10982824] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 9.0E-80 /// hanks // 3.1.7 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; PCTAIRE1 // 9.0E-80 --- --- S0006365 // SGV1 SGDID:S0006365, Chr XVI from 866418-864445, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017308 // cdna:Genscan chromosome:SGD1:XVI:864445:866418:-1 // ensembl // 11 // --- /// GENEFINDER00000021026 // cdna:GeneFinder chromosome:SGD1:XVI:864445:866046:-1 // ensembl // 11 // --- /// YPR161C // cdna:known chromosome:SGD1:XVI:864445:866418:-1 gene:YPR161C // ensembl // 11 // --- --- No cerevisiae_gene -1.03070275400493 -1.01121924569431 1.03692527534479 1.30776998122693 1.09462272658634 Max fold change below threshold 4 1.30776998122693 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772298_at YGL160W.S1 Hypothetical protein 1.30754428973098 663.253234863281 658.495330810547 --- --- 16020 // membrane // inferred from sequence similarity 16491 // oxidoreductase activity // inferred from sequence similarity 638.444152832031 705.717590332031 620.788879394531 678.546508789063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL160W /GEN=YIP5 /DB_XREF=GI:6321278 /SEG=NC_001139:+200565,202277 /DEF=Hypothetical ORF /NOTE=Ygl160wp; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 10341420]; go_function: oxidoreductase activity [goid GO:0016491] [evidence ISS] [pmid 10341420]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003128 // span:23-45,64-86,101-118,138-160,175-197,204-222,232-251 // numtm:7 S0003128 // YGL160W SGDID:S0003128, Chr VII from 200567-202279, Uncharacterized ORF // sgd // 11 // --- /// YGL160W // cdna:known chromosome:SGD1:VII:200567:202279:1 gene:YGL160W // ensembl // 11 // --- GENSCAN00000019228 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.14315469578059 1.10537090394138 1.30754428973098 -1.02844006074129 1.0628126293884 Max fold change below threshold 4 1.30754428973098 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779786_s_at YJL138C.S1 Translation initiation factor eIF4A, identical to Tif2p; DEA(D/H)-box RNA helicase that couples ATPase activity to RNA binding and unwinding; forms a dumbbell structure of two compact domains connected by a linker; interacts with eIF4G /// Translation initiation factor eIF4A, identical to Tif1p; DEA(D/H)-box RNA helicase that couples ATPase activity to RNA binding and unwinding; forms a dumbbell structure of two compact domains connected by a linker; interacts with eIF4G 1.30703452354501 5161.29052734375 4814.0009765625 TIF1 /// TIF2 6413 // translational initiation // traceable author statement /// 6446 // regulation of translational initiation // inferred from sequence similarity 5840 // ribosome // traceable author statement /// 16281 // eukaryotic translation initiation factor 4F complex // inferred from genetic interaction /// 16281 // eukaryotic translation initiation factor 4F complex // inferred from sequence similarity /// 5737 // cytoplasm // inferred from sequence similarity /// 5737 // cytoplasm // inferred from direct assay 3743 // translation initiation factor activity // traceable author statement /// 3724 // RNA helicase activity // inferred from direct assay /// 3743 // translation initiation factor activity // inferred from sequence similarity /// 3743 // translation initiation factor activity // inferred from direct assay 5339.53662109375 5746.71484375 4575.8662109375 4288.46533203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL138C /GEN=TIF2 /DB_XREF=GI:6322323 /SEG=NC_001142:-153422,154609 /DEF=translation initiation factor eIF4A /NOTE=Tif2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytoplasm [goid GO:0005737] [evidence ISS] [pmid 2648398]; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 9841679]; go_function: RNA helicase activity [goid GO:0003724] [evidence IDA] [pmid 1502180]; go_function: translation initiation factor activity [goid GO:0003743] [evidence IDA] [pmid 1502180]; go_function: translation initiation factor activity [goid GO:0003743] [evidence ISS] [pmid 2648398]; go_function: translation initiation factor activity [goid GO:0003743] [evidence TAS] [pmid 9841679]; go_process: regulation of translational initiation [goid GO:0006446] [evidence ISS] [pmid 2648398]; go_process: translational initiation [goid GO:0006413] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0003674 // TIF2 SGDID:S0003674, Chr X from 154609-153422, reverse complement, Verified ORF // sgd // 11 // --- /// S0001767 // TIF1 SGDID:S0001767, Chr XI from 554629-555816, Verified ORF // sgd // 11 // --- /// GENSCAN00000024033 // cdna:Genscan chromosome:SGD1:X:153422:154609:-1 // ensembl // 11 // --- /// GENEFINDER00000024405 // cdna:GeneFinder chromosome:SGD1:X:153422:154609:-1 // ensembl // 11 // --- /// GENSCAN00000018467 // cdna:Genscan chromosome:SGD1:XI:554629:555816:1 // ensembl // 11 // --- /// GENEFINDER00000022956 // cdna:GeneFinder chromosome:SGD1:XI:554629:555816:1 // ensembl // 11 // --- /// YJL138C // cdna:known chromosome:SGD1:X:153422:154609:-1 gene:YJL138C // ensembl // 11 // --- /// YKR059W // cdna:known chromosome:SGD1:XI:554629:555816:1 gene:YKR059W // ensembl // 11 // --- --- No cerevisiae_gene -1.02513035634703 1.07625722071981 -1.30703452354501 -1.16689089561467 -1.24509263983362 Max fold change below threshold 4 1.30703452354501 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774071_at YPL237W.S1 Beta subunit of the translation initiation factor eIF2, involved in the identification of the start codon; proposed to be involved in mRNA binding 1.30635742501233 2747.5986328125 2279.31042480469 SUI3 6413 // translational initiation // traceable author statement 5840 // ribosome // traceable author statement /// 5850 // eukaryotic translation initiation factor 2 complex // inferred from mutant phenotype /// 5850 // eukaryotic translation initiation factor 2 complex // inferred from sequence similarity 3743 // translation initiation factor activity // traceable author statement 2294.26538085938 2997.13061523438 2498.06665039063 2264.35546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL237W /GEN=SUI3 /DB_XREF=GI:6325018 /SEG=NC_001148:+100496,101353 /DEF=Beta subunit of the translation initiation factor eIF2, involved in the identification of the start codon; proposed to be involved in mRNA binding /NOTE=Sui3p; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 9841679]; go_function: translation initiation factor activity [goid GO:0003743] [evidence TAS] [pmid 9841679]; go_process: translational initiation [goid GO:0006413] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0006158 // SUI3 SGDID:S0006158, Chr XVI from 100496-101353, Verified ORF // sgd // 10 // --- /// GENSCAN00000017003 // cdna:Genscan chromosome:SGD1:XVI:100496:101353:1 // ensembl // 10 // --- /// GENEFINDER00000020713 // cdna:GeneFinder chromosome:SGD1:XVI:100496:101353:1 // ensembl // 10 // --- /// YPL237W // cdna:known chromosome:SGD1:XVI:100496:101353:1 gene:YPL237W // ensembl // 10 // --- YPL238C // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene 1.29569660938113 1.30635742501233 1.06343559343731 1.08883073040788 -1.01320901798422 Max fold change below threshold 4 1.30635742501233 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779591_at YKR011C.S1 Hypothetical protein 1.30589174847514 981.335998535156 883.782897949219 --- --- 5634 // nucleus // inferred from direct assay --- 854.819091796875 1050.86279296875 911.809204101563 912.746704101563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR011C /GEN=TOF2 /DB_XREF=GI:6322863 /SEG=NC_001143:-461278,462339 /DEF=Hypothetical ORF /NOTE=Ykr011cp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001719 // YKR011C SGDID:S0001719, Chr XI from 462339-461278, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YKR011C // cdna:known chromosome:SGD1:XI:461278:462339:-1 gene:YKR011C // ensembl // 11 // --- --- No cerevisiae_gene -1.30589174847514 1.22933940415367 -1.24834688489884 1.06666920855136 1.06776593183351 Max fold change below threshold 4 1.30589174847514 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773979_at YDL007W.S1 One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates; required for normal peptide hydrolysis by the core 20S particle 1.30568900479408 2296.75524902344 1789.33190917969 RPT2 6511 // ubiquitin-dependent protein catabolism // traceable author statement 5634 // nucleus // inferred from direct assay /// 8540 // proteasome regulatory particle, base subcomplex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement /// 16887 // ATPase activity // traceable author statement /// 16887 // ATPase activity // inferred from direct assay 1766.27160644531 2287.30908203125 2306.20141601563 1812.39221191406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL007W /GEN=RPT2 /DB_XREF=GI:6320197 /SEG=NC_001136:+438044,439357 /DEF=Probable 26S protease subunit and member of CDC48/PAS1/SEC18 family of ATPases /NOTE=Rpt2p; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence TAS] [pmid 9697412]; go_function: ATPase activity [goid GO:0016887] [evidence TAS] [pmid 9697412]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 9697412]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 9697412] --- --- --- --- --- --- S0002165 // RPT2 SGDID:S0002165, Chr IV from 438044-439357, Verified ORF // sgd // 11 // --- /// GENSCAN00000025093 // cdna:Genscan chromosome:SGD1:IV:438044:439357:1 // ensembl // 11 // --- /// GENEFINDER00000023762 // cdna:GeneFinder chromosome:SGD1:IV:438227:439357:1 // ensembl // 11 // --- /// YDL007W // cdna:known chromosome:SGD1:IV:438044:439357:1 gene:YDL007W // ensembl // 11 // --- --- No cerevisiae_gene -1.11767693890259 1.29499283897483 -1.03690886962771 1.30568900479408 1.02611184219938 Max fold change below threshold 4 1.30568900479408 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777718_at YGL058W.S1 Ubiquitin-conjugating enzyme (E2), involved in postreplication repair (with Rad18p), sporulation, telomere silencing, and ubiquitin-mediated N-end rule protein degradation (with Ubr1p) 1.30556216463171 567.556793212891 627.704345703125 RAD6 6281 // DNA repair // traceable author statement /// 6511 // ubiquitin-dependent protein catabolism // inferred from mutant phenotype /// 6513 // protein monoubiquitination // inferred from mutant phenotype /// 16574 // histone ubiquitination // inferred from mutant phenotype 502 // proteasome complex (sensu Eukaryota) // inferred from physical interaction /// 5634 // nucleus // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4840 // ubiquitin conjugating enzyme activity // inferred from mutant phenotype /// 4840 // ubiquitin conjugating enzyme activity // inferred from direct assay 679.877075195313 597.368408203125 537.745178222656 575.531616210938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL058W /GEN=RAD6 /DB_XREF=GI:6321380 /SEG=NC_001139:+393990,394508 /DEF=Ubiquitin-conjugating enzyme (E2), involved in postreplication repair (with Rad18p), sporulation, telomere silencing, and uniquitin-mediated N-end rule protein degradation (with Ubr1p) /NOTE=Rad6p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10880451]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10880451]; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 7926769]; go_component: proteasome complex (sensu Eukarya) [goid GO:0000502] [evidence IPI] [pmid 10848595]; go_function: ubiquitin conjugating enzyme activity [goid GO:0004840] [evidence IMP] [pmid 2157209]; go_function: ubiquitin conjugating enzyme activity [goid GO:0004840] [evidence IDA] [pmid 9287349]; go_process: DNA repair [goid GO:0006281] [evidence TAS] [pmid 8031302]; go_process: histone ubiquitination [goid GO:0016574] [evidence IMP] [pmid 12535538]; go_process: protein monoubiquitination [goid GO:0006513] [evidence IMP] [pmid 12535538]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence IMP] [pmid 2157209] --- --- --- --- --- --- S0003026 // RAD6 SGDID:S0003026, Chr VII from 393992-394510, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021610 // cdna:GeneFinder chromosome:SGD1:VII:393992:394510:1 // ensembl // 11 // --- /// YGL058W // cdna:known chromosome:SGD1:VII:393992:394510:1 gene:YGL058W // ensembl // 11 // --- --- No cerevisiae_gene -1.07951320707248 -1.13812023846452 -1.30556216463171 -1.26431087200526 -1.18130274001512 Max fold change below threshold 4 1.30556216463171 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776075_at YOR149C.S1 Alpha 1,2-mannosyltransferase involved in glycosyl phosphatidyl inositol (GPI) biosynthesis; required for addition of the fourth, side branching mannose to the GPI core structure 1.30509056971913 123.537334442139 146.558891296387 SMP3 6276 // plasmid maintenance // inferred from mutant phenotype /// 6506 // GPI anchor biosynthesis // inferred from mutant phenotype 5783 // endoplasmic reticulum // traceable author statement 26 // alpha-1,2-mannosyltransferase activity // inferred from mutant phenotype 139.97038269043 127.035331726074 120.039337158203 153.147399902344 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR149C /GEN=SMP3 /DB_XREF=GI:6324723 /SEG=NC_001147:-609838,611388 /DEF=Involved in glycosyl phosphatidyl inositol synthesis; most likely an alpha 1,2 mannosyltransferase utilized for addition of the fourth, side-branching mannose onto the GPI core structure. /NOTE=Smp3p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS] [pmid 11356840]; go_function: alpha-1,2-mannosyltransferase activity [goid GO:0000026] [evidence IMP] [pmid 11356840]; go_process: GPI anchor biosynthesis [goid GO:0006506] [evidence IMP] [pmid 11356840]; go_process: plasmid maintenance [goid GO:0006276] [evidence IMP] [pmid 2005867] --- --- --- --- --- S0005675 // span:7-26,185-207,214-236,269-291,296-313,318-340,347-369 // numtm:7 S0005675 // SMP3 SGDID:S0005675, Chr XV from 611388-609838, reverse complement, Verified ORF // sgd // 11 // --- /// YOR149C // cdna:known chromosome:SGD1:XV:609838:611388:-1 gene:YOR149C // ensembl // 11 // --- GENSCAN00000017573 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene 1.30509056971913 -1.10182246772297 1.24657882794026 -1.16603761736837 1.09414146734926 Max fold change below threshold 4 1.30509056971913 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779538_at YKL068W.S1 Subunit of the nuclear pore complex (NPC) that is localized to both sides of the pore; contains a repetitive GLFG motif that interacts with mRNA export factor Mex67p and with karyopherin Kap95p; homologous to Nup116p 1.30474078582986 571.392700195313 530.16178894043 NUP100 6406 // mRNA-nucleus export // traceable author statement /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6999 // nuclear pore organization and biogenesis // traceable author statement 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement 504.261871337891 582.160217285156 560.625183105469 556.061706542969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL068W /GEN=NUP100 /DB_XREF=GI:6322782 /SEG=NC_001143:+309844,312723 /DEF=Subunit of the nuclear pore complex (NPC) that is localized to both sides of the pore; contains a repetitive GLFG motif that interacts with mRNA export factor Mex67p and with karyopherin Kap95p; homologous to Nup116p /NOTE=Nup100p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence TAS] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0001551 // NUP100 SGDID:S0001551, Chr XI from 309844-312723, Verified ORF // sgd // 11 // --- /// GENSCAN00000018367 // cdna:Genscan chromosome:SGD1:XI:309844:312723:1 // ensembl // 11 // --- /// GENEFINDER00000022946 // cdna:GeneFinder chromosome:SGD1:XI:309844:312723:1 // ensembl // 11 // --- /// YKL068W // cdna:known chromosome:SGD1:XI:309844:312723:1 gene:YKL068W // ensembl // 11 // --- --- No cerevisiae_gene 1.2400769975017 1.15447994459821 1.30474078582986 1.1117738916449 1.1027240768128 Max fold change below threshold 4 1.30474078582986 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778043_at YCL028W.S1 [PIN(+)] prion, an infectious protein conformation that is generally an ordered protein aggregate 1.30450275826683 1714.29956054688 1327.01843261719 RNQ1 --- 5829 // cytosol // inferred from direct assay --- 1363.70947265625 1649.63635253906 1778.96276855469 1290.32739257813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL028W /GEN=RNQ1 /DB_XREF=GI:10383762 /SEG=NC_001135:+70150,71367 /DEF=[PIN(+)] prion /NOTE=Rnq1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 11511345]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000533 // RNQ1 SGDID:S0000533, Chr III from 70150-71367, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023336 // cdna:GeneFinder chromosome:SGD1:III:70150:71367:1 // ensembl // 11 // --- /// GENSCAN00000022444 // cdna:Genscan chromosome:SGD1:III:70702:71367:1 // ensembl // 11 // --- /// YCL028W // cdna:known chromosome:SGD1:III:70150:71367:1 gene:YCL028W // ensembl // 11 // --- --- No cerevisiae_gene -1.26579428917172 1.20966847089936 -1.14593226392725 1.30450275826683 -1.05687089997485 Max fold change below threshold 4 1.30450275826683 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770753_at YDR099W.S1 14-3-3 protein, minor isoform; binds proteins and DNA, involved in regulation of many processes including exocytosis and vesicle transport, Ras/MAPK signaling during pseudohyphal development, rapamycin-sensitive signaling, and others 1.30407248726202 3561.90563964844 3915.171875 BMH2 77 // DNA damage checkpoint // inferred from mutant phenotype /// 1402 // signal transduction during filamentous growth // inferred from genetic interaction /// 5977 // glycogen metabolism // inferred from genetic interaction /// 7124 // pseudohyphal growth // inferred from genetic interaction /// 7265 // Ras protein signal transduction // inferred from genetic interaction /// 30437 // sporulation (sensu Fungi) // inferred from genetic interaction 5634 // nucleus // inferred from direct assay 3677 // DNA binding // inferred from direct assay /// 5515 // protein binding // traceable author statement 4298.9599609375 3772.83618164063 3350.97509765625 3531.3837890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR099W /GEN=BMH2 /DB_XREF=GI:6320304 /SEG=NC_001136:+653601,654422 /DEF=14-3-3 protein, minor isoform; binds proteins and DNA, involved in regulation of many processes including exocytosis and vesicle transport, Ras/MAPK signaling during pseudohyphal development, rapamycin-sentitive signaling, and others /NOTE=Bmh2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12167636]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 12167636]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 11447594]; go_process: RAS protein signal transduction [goid GO:0007265] [evidence IGI] [pmid 9215628]; go_process: glycogen metabolism [goid GO:0005977] [evidence IGI] [pmid 9215628]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IGI] [pmid 9215628]; go_process: signal transduction during filamentous growth [goid GO:0001402] [evidence IGI] [pmid 9215628]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IGI] [pmid 9215628] --- --- --- --- --- --- S0002506 // BMH2 SGDID:S0002506, Chr IV from 653602-654423, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023767 // cdna:GeneFinder chromosome:SGD1:IV:653671:654423:1 // ensembl // 11 // --- /// YDR099W // cdna:known chromosome:SGD1:IV:653602:654423:1 gene:YDR099W // ensembl // 11 // --- --- No cerevisiae_gene -1.30407248726202 -1.13945047014156 -1.15151355825088 -1.28289821190981 -1.21735846844298 Max fold change below threshold 4 1.30407248726202 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773196_at YLR200W.S1 Subunit of the heterohexameric Gim/prefoldin protein complex involved in the folding of alpha-tubulin, beta-tubulin, and actin 1.30402355881045 518.39289855957 626.585601806641 YKE2 6457 // protein folding // inferred from sequence similarity /// 6457 // protein folding // inferred from mutant phenotype /// 7021 // tubulin folding // inferred from sequence similarity /// 7021 // tubulin folding // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 16272 // prefoldin complex // inferred from physical interaction /// 16272 // prefoldin complex // inferred from sequence similarity 15631 // tubulin binding // inferred from direct assay 648.830078125 539.225708007813 497.560089111328 604.341125488281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR200W /GEN=YKE2 /DB_XREF=GI:6323229 /SEG=NC_001144:+549014,549358 /DEF=Yeast nuclear gene encoding a protein showing homology to mouse KE2 and containing a putative leucine-zipper motif /NOTE=Yke2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9463374]; go_component: prefoldin complex [goid GO:0016272] [evidence IPI] [pmid 9463374]; go_component: prefoldin complex [goid GO:0016272] [evidence ISS] [pmid 9630229]; go_function: tubulin binding [goid GO:0015631] [evidence IDA] [pmid 9463374]; go_process: protein folding [goid GO:0006457] [evidence IMP,ISS] [pmid 9463374]; go_process: tubulin folding [goid GO:0007021] [evidence IMP,ISS] [pmid 9463374] --- --- --- --- scop // a.2.5.Prefoldin // All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin // 3.00000014249235E-4 --- S0004190 // YKE2 SGDID:S0004190, Chr XII from 549014-549358, Verified ORF // sgd // 11 // --- /// GENSCAN00000017975 // cdna:Genscan chromosome:SGD1:XII:549014:549358:1 // ensembl // 11 // --- /// YLR200W // cdna:known chromosome:SGD1:XII:549014:549358:1 gene:YLR200W // ensembl // 11 // --- --- No cerevisiae_gene 1.01478735765395 -1.20326250861096 -1.12299009579889 -1.30402355881045 -1.07361562991559 Max fold change below threshold 4 1.30402355881045 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774558_at YPL031C.S1 Cyclin-dependent kinase, with ten cyclin partners; involved in environmental stress response; in phosphate-rich conditions, Pho85p-Pho80p complex phosphorylates Pho4p which in turn represses PHO5 1.30377345776692 1642.30010986328 1544.83135986328 PHO85 5977 // glycogen metabolism // inferred from direct assay /// 5977 // glycogen metabolism // inferred from mutant phenotype /// 5977 // glycogen metabolism // inferred from genetic interaction /// 6468 // protein amino acid phosphorylation // traceable author statement /// 6468 // protein amino acid phosphorylation // inferred from direct assay /// 6468 // protein amino acid phosphorylation // inferred from mutant phenotype /// 6796 // phosphate metabolism // traceable author statement /// 7049 // cell cycle // inferred from mutant phenotype /// 7049 // cell cycle // inferred from genetic interaction 5634 // nucleus // inferred from direct assay 4693 // cyclin-dependent protein kinase activity // inferred from mutant phenotype /// 4693 // cyclin-dependent protein kinase activity // inferred from physical interaction /// 4693 // cyclin-dependent protein kinase activity // traceable author statement /// 4693 // cyclin-dependent protein kinase activity // inferred from direct assay 1591.90930175781 1448.79846191406 1835.8017578125 1497.75341796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL031C /GEN=PHO85 /DB_XREF=GI:6325226 /SEG=NC_001148:-492014,493033 /DEF=Cyclin-dependent kinase, with ten cyclin partners; involved in environmental stress response; in phosphate-rich conditions, Pho85p-Pho80p complex phosphorylates Pho4p which in turn represses PHO5 /NOTE=Pho85p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12455686]; go_function: cyclin-dependent protein kinase activity [goid GO:0004693] [evidence TAS] [pmid 8918192]; go_function: cyclin-dependent protein kinase activity [goid GO:0004693] [evidence IDA,IMP,IPI] [pmid 9584169]; go_process: cell cycle [goid GO:0007049] [evidence IGI,IMP] [pmid 9593297]; go_process: glycogen metabolism [goid GO:0005977] [evidence IDA,IGI,IMP] [pmid 8722762]; go_process: phosphate metabolism [goid GO:0006796] [evidence TAS] [pmid 8918192]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence TAS] [pmid 8918192]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA,IMP] [pmid 9584169] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 7.0E-98 /// hanks // 3.1.2 // CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk2 // 1.0E-93 --- --- S0005952 // PHO85 SGDID:S0005952, Chr XVI from 493035-493019,492916-492016, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000017163 // cdna:Genscan chromosome:SGD1:XVI:492016:492924:-1 // ensembl // 11 // --- /// YPL031C // cdna:known chromosome:SGD1:XVI:492016:493035:-1 gene:YPL031C // ensembl // 11 // --- GENEFINDER00000021029 // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene -1.30377345776692 -1.09877898383097 1.01504617656989 1.1532075073532 -1.06286474306081 Max fold change below threshold 4 1.30377345776692 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772015_at YDR346C.S1 Protein with a potential role in cell survival pathways, required for the diauxic growth shift; expression in mammalian cells increases survival under conditions inducing apoptosis 1.30354407425278 897.278503417969 1136.50225830078 SVF1 6979 // response to oxidative stress // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1090.45495605469 836.530944824219 958.026062011719 1182.54956054688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR346C /GEN=SVF1 /DB_XREF=GI:6320553 /SEG=NC_001136:-1167204,1168649 /DEF=Involved in the diauxic switch; function substituted by human Bcl-XL; involved in cell survival /NOTE=Svf1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002754 // SVF1 SGDID:S0002754, Chr IV from 1168651-1167206, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023563 // cdna:GeneFinder chromosome:SGD1:IV:1167206:1168609:-1 // ensembl // 11 // --- /// YDR346C // cdna:known chromosome:SGD1:IV:1167206:1168651:-1 gene:YDR346C // ensembl // 11 // --- --- No cerevisiae_gene 1.03969906214111 -1.30354407425278 1.0338863498036 -1.13823099317871 1.08445521200196 Max fold change below threshold 4 1.30354407425278 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777021_at YNR018W.S1 Hypothetical protein 1.30344945621438 988.925445556641 1065.96636962891 --- --- 5739 // mitochondrion // inferred from direct assay --- 1033.47216796875 831.319396972656 1146.53149414063 1098.46057128906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR018W /GEN=MAS6 /DB_XREF=GI:6324345 /SEG=NC_001146:+664269,664943 /DEF=Hypothetical ORF /NOTE=Ynr018wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005301 // span:20-39,152-171 // numtm:2 S0005301 // YNR018W SGDID:S0005301, Chr XIV from 664270-664944, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000020052 // cdna:Genscan chromosome:SGD1:XIV:664270:664944:1 // ensembl // 11 // --- /// GENEFINDER00000020464 // cdna:GeneFinder chromosome:SGD1:XIV:664270:664944:1 // ensembl // 11 // --- /// YNR018W // cdna:known chromosome:SGD1:XIV:664270:664944:1 gene:YNR018W // ensembl // 11 // --- --- No cerevisiae_gene 1.12928190721603 -1.24317100230339 1.30344945621438 1.10939755290565 1.06288355442416 Max fold change below threshold 4 1.30344945621438 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773445_at YGR263C.S1 presents weak similarity to a putative E. coli protein defined as a lipase-like enzyme 1.30307292200867 272.431121826172 276.583740234375 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 268.880615234375 261.056701660156 283.805541992188 284.286865234375 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR263C /GEN=BUD32 /DB_XREF=GI:6321702 /SEG=NC_001139:-1017972,1019246 /DEF=presents weak similarity to a putative E. coli protein defined as a lipase-like enzyme /NOTE=Ygr263cp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003495 // span:44-66 // numtm:1 S0003495 // YGR263C SGDID:S0003495, Chr VII from 1019247-1017973, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019544 // cdna:Genscan chromosome:SGD1:VII:1017973:1019247:-1 // ensembl // 11 // --- /// GENEFINDER00000021768 // cdna:GeneFinder chromosome:SGD1:VII:1017973:1019247:-1 // ensembl // 11 // --- /// YGR263C // cdna:known chromosome:SGD1:VII:1017973:1019247:-1 gene:YGR263C // ensembl // 11 // --- --- No cerevisiae_gene -1.30307292200867 -1.02997016940942 1.1141869867025 1.05550763391702 1.0572977341136 Max fold change below threshold 4 1.30307292200867 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773002_at YMR236W.S1 Subunit (17 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiation and in chromatin modification, similar to histone H3 1.30232720204115 961.079467773438 1001.40405273438 TAF9 114 // G1-specific transcription in mitotic cell cycle // inferred from physical interaction /// 6325 // establishment and/or maintenance of chromatin architecture // inferred from physical interaction /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 6473 // protein amino acid acetylation // inferred from physical interaction /// 16568 // chromatin modification // traceable author statement /// 16573 // histone acetylation // traceable author statement 124 // SAGA complex // inferred from direct assay /// 5669 // transcription factor TFIID complex // traceable author statement /// 5669 // transcription factor TFIID complex // inferred from direct assay /// 46695 // SLIK (SAGA-like) complex // inferred from physical interaction 16251 // general RNA polymerase II transcription factor activity // traceable author statement 958.166137695313 776.495727539063 1145.66320800781 1044.64196777344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR236W /GEN=TAF9 /DB_XREF=GI:6323892 /SEG=NC_001145:+742970,743443 /DEF=Subunit (17 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiation and in chromatin modification, similar to histone H3 /NOTE=Taf9p; go_component: SAGA complex [goid GO:0000124] [evidence IDA] [pmid 9674426]; go_component: transcription factor TFIID complex [goid GO:0005669] [evidence TAS] [pmid 9118213]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9118213]; go_process: G1-specific transcription in mitotic cell cycle [goid GO:0000114] [evidence IPI] [pmid 9118213]; go_process: chromatin modification [goid GO:0016568] [evidence TAS] [pmid 10839822]; go_process: establishment and/or maintenance of chromatin architecture [goid GO:0006325] [evidence IPI] [pmid 9674426]; go_process: histone acetylation [goid GO:0016573] [evidence TAS] [pmid 10839822]; go_process: protein amino acid acetylation [goid GO:0006473] [evidence IPI] [pmid 9674426]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 9118213] --- --- --- --- --- --- S0004849 // TAF9 SGDID:S0004849, Chr XIII from 742970-743443, Verified ORF // sgd // 11 // --- /// GENSCAN00000018913 // cdna:Genscan chromosome:SGD1:XIII:742970:743443:1 // ensembl // 11 // --- /// GENEFINDER00000021780 // cdna:GeneFinder chromosome:SGD1:XIII:742970:743443:1 // ensembl // 11 // --- /// YMR236W // cdna:known chromosome:SGD1:XIII:742970:743443:1 gene:YMR236W // ensembl // 11 // --- --- No cerevisiae_gene 1.19930663854355 -1.23396189278725 1.30232720204115 1.19568325672987 1.09025139448794 Max fold change below threshold 4 1.30232720204115 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772186_at YER105C.S1 Abundant subunit of the nuclear pore complex (NPC), present on both sides of the NPC, has similarity to Nup170p 1.3015654300721 1151.44146728516 1453.02703857422 NUP157 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 6406 // mRNA-nucleus export // traceable author statement /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6999 // nuclear pore organization and biogenesis // traceable author statement 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement 1438.22741699219 1129.42895507813 1173.45397949219 1467.82666015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER105C /GEN=NUP157 /DB_XREF=GI:6320952 /SEG=NC_001137:-367834,372009 /DEF=Abundant subunit of the nuclear pore complex (NPC), present on both sides of the NPC, has similarity to Nup170p /NOTE=Nup157p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP,TAS] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0000907 // NUP157 SGDID:S0000907, Chr V from 372009-367834, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000016890 // cdna:Genscan chromosome:SGD1:V:367834:372009:-1 // ensembl // 10 // --- /// GENEFINDER00000019654 // cdna:GeneFinder chromosome:SGD1:V:367834:369792:-1 // ensembl // 10 // --- /// YER105C // cdna:known chromosome:SGD1:V:367834:372009:-1 gene:YER105C // ensembl // 10 // --- --- No cerevisiae_gene -1.3015654300721 -1.27341114332659 1.01882012999706 -1.22563597902202 1.02058036358809 Max fold change below threshold 4 1.3015654300721 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771521_at YOR099W.S1 Alpha-1,2-mannosyltransferase involved in O- and N-linked protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family 1.30141857988094 1909.63385009766 2373.84887695313 KTR1 32 // cell wall mannoprotein biosynthesis // inferred from mutant phenotype /// 6491 // N-glycan processing // inferred from mutant phenotype /// 6493 // O-linked glycosylation // inferred from mutant phenotype 5794 // Golgi apparatus // inferred from direct assay 26 // alpha-1,2-mannosyltransferase activity // inferred from direct assay /// 26 // alpha-1,2-mannosyltransferase activity // inferred from mutant phenotype 2427.59619140625 1953.92150878906 1865.34619140625 2320.1015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR099W /GEN=KTR1 /DB_XREF=GI:6324673 /SEG=NC_001147:+511825,513006 /DEF=mannosyltransferase involved in O- and N-linked glycosylation /NOTE=Ktr1p; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 8631921]; go_function: alpha-1,2-mannosyltransferase activity [goid GO:0000026] [evidence IDA] [pmid 9020857]; go_function: alpha-1,2-mannosyltransferase activity [goid GO:0000026] [evidence IMP] [pmid 9182588]; go_process: N-glycan processing [goid GO:0006491] [evidence IMP] [pmid 9182588]; go_process: O-linked glycosylation [goid GO:0006493] [evidence IMP] [pmid 9182588]; go_process: cell wall mannoprotein biosynthesis [goid GO:0000032] [evidence IMP] [pmid 8631921] --- --- --- --- --- S0005625 // span:17-36 // numtm:1 S0005625 // KTR1 SGDID:S0005625, Chr XV from 511825-513006, Verified ORF // sgd // 11 // --- /// GENSCAN00000017535 // cdna:Genscan chromosome:SGD1:XV:511825:513006:1 // ensembl // 11 // --- /// GENEFINDER00000022929 // cdna:GeneFinder chromosome:SGD1:XV:511825:513006:1 // ensembl // 11 // --- /// YOR099W // cdna:known chromosome:SGD1:XV:511825:513006:1 gene:YOR099W // ensembl // 11 // --- --- No cerevisiae_gene 1.2699120846983 -1.24242257454382 -1.25081579997079 -1.30141857988094 -1.04633186350274 Max fold change below threshold 4 1.30141857988094 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777133_at YNL173C.S1 Plasma membrane protein involved in G-protein mediated pheromone signaling pathway; overproduction suppresses bem1 mutations 1.30095990903088 1859.57940673828 1482.19213867188 MDG1 750 // signal transduction during conjugation with cellular fusion // inferred from mutant phenotype 5886 // plasma membrane // inferred from direct assay --- 1434.42395019531 1853.03076171875 1866.12805175781 1529.96032714844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL173C /GEN=MDG1 /DB_XREF=GI:6324156 /SEG=NC_001146:-308957,310057 /DEF=multicopy suppressor of bem1 mutation, may be involved in G-protein mediated signal transduction; binds cruciform DNA /NOTE=Mdg1p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 8914522]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence IMP] [pmid 8914522] --- --- --- --- --- --- S0005117 // MDG1 SGDID:S0005117, Chr XIV from 310057-308957, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019901 // cdna:Genscan chromosome:SGD1:XIV:308957:309958:-1 // ensembl // 11 // --- /// GENEFINDER00000020690 // cdna:GeneFinder chromosome:SGD1:XIV:308957:310057:-1 // ensembl // 11 // --- /// YNL173C // cdna:known chromosome:SGD1:XIV:308957:310057:-1 gene:YNL173C // ensembl // 11 // --- --- No cerevisiae_gene -1.21738520995407 1.29182921232348 1.22415816589865 1.30095990903088 1.06660260862217 Max fold change below threshold 4 1.30095990903088 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777933_at YEL005C.S1 Protein with a potential role in vacuolar function, as suggested by its ability to bind Vac8p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.30088410127736 788.841033935547 770.078033447266 VAB2 --- 5737 // cytoplasm // inferred from direct assay 5515 // protein binding // inferred from physical interaction 733.509582519531 672.22998046875 905.452087402344 806.646484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL005C /GEN=VAB2 /DB_XREF=GI:6320832 /SEG=NC_001137:-145906,146754 /DEF=Protein with a potential role in vacuolar function, as suggested by its ability to bind Vac8p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Vab2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 10888680]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000731 // VAB2 SGDID:S0000731, Chr V from 146754-145906, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016800 // cdna:Genscan chromosome:SGD1:V:145906:146754:-1 // ensembl // 11 // --- /// YEL005C // cdna:known chromosome:SGD1:V:145906:146754:-1 gene:YEL005C // ensembl // 11 // --- --- No cerevisiae_gene -1.30088410127736 -1.09115868650793 1.0677183492748 1.23441071388898 1.09970817505103 Max fold change below threshold 4 1.30088410127736 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778327_at YIL008W.S1 Ubiquitin-like protein with only weak sequence similarity to ubiquitin; depends on the E1-like activating enzyme Uba4p; molecular function of the Urm1p pathway is unknown, but it is required for normal growth, particularly at high temperature 1.29974731371139 296.138336181641 397.600341796875 URM1 6464 // protein modification // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 5515 // protein binding // inferred from direct assay /// 5515 // protein binding // inferred from mutant phenotype /// 31386 // protein tag // inferred from direct assay /// 31386 // protein tag // inferred from mutant phenotype 356.095184326172 318.304046630859 273.972625732422 439.105499267578 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL008W /GEN=URM1 /DB_XREF=GI:6322183 /SEG=NC_001141:+342533,342832 /DEF=ubiquitin-like protein /NOTE=Urm1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: protein binding [goid GO:0005515] [evidence IDA,IMP] [pmid 14551258]; go_process: protein modification [goid GO:0006464] [evidence IDA] [pmid 10713047] --- --- --- --- --- --- S0001270 // URM1 SGDID:S0001270, Chr IX from 342533-342832, Verified ORF // sgd // 11 // --- /// GENSCAN00000016469 // cdna:Genscan chromosome:SGD1:IX:342533:342832:1 // ensembl // 11 // --- /// YIL008W // cdna:known chromosome:SGD1:IX:342533:342832:1 gene:YIL008W // ensembl // 11 // --- --- No cerevisiae_gene -1.2178592008353 -1.1187265386517 1.07524797260185 -1.29974731371139 1.23311271422691 Max fold change below threshold 4 1.29974731371139 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774327_at YER009W.S1 Nuclear envelope protein, interacts with GDP-bound Gsp1p and with proteins of the nuclear pore to transport Gsp1p into the nucleus where it is an essential player in nucleocytoplasmic transport 1.29969556692617 1818.28057861328 2184.39318847656 NTF2 6606 // protein-nucleus import // inferred from mutant phenotype /// 6913 // nucleocytoplasmic transport // inferred from mutant phenotype 5635 // nuclear membrane // inferred from direct assay 8536 // Ran GTPase binding // inferred from physical interaction 2248.8515625 1730.291015625 1906.27014160156 2119.93481445313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER009W /GEN=NTF2 /DB_XREF=GI:6320846 /SEG=NC_001137:+172114,172491 /DEF=Nuclear envelope protein, interacts with GDP-bound Gsp1p and with proteins of the nuclear pore to transport Gsp1p into the nucleus where it is an essential player in nucleocytoplasmic transport /NOTE=Ntf2p; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 8702493]; go_function: RAN protein binding [goid GO:0008536] [evidence IPI] [pmid 10889207]; go_process: nucleocytoplasmic transport [goid GO:0006913] [evidence IMP] [pmid 8702493]; go_process: protein-nucleus import [goid GO:0006606] [evidence IMP] [pmid 8702493] --- --- --- --- --- --- S0000811 // NTF2 SGDID:S0000811, Chr V from 172114-172491, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019638 // cdna:GeneFinder chromosome:SGD1:V:172114:172491:1 // ensembl // 11 // --- /// YER009W // cdna:known chromosome:SGD1:V:172114:172491:1 gene:YER009W // ensembl // 11 // --- --- No cerevisiae_gene 1.17778833727632 -1.29969556692617 -1.28616297315691 -1.17971294488756 -1.06081165664527 Max fold change below threshold 4 1.29969556692617 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772457_at YNL189W.S1 Karyopherin alpha homolog, forms a dimer with karyopherin beta Kap95p to mediate import of nuclear proteins, binds the nuclear localization signal of the substrate during import; may also play a role in regulation of protein degradation 1.29962287465125 2021.44464111328 1753.27801513672 SRP1 6913 // nucleocytoplasmic transport // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8320 // protein carrier activity // traceable author statement 1746.611328125 1961.26257324219 2081.62670898438 1759.94470214844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL189W /GEN=SRP1 /DB_XREF=GI:6324140 /SEG=NC_001146:+284259,285887 /DEF=karyopherin alpha homolog of 60 kDa /NOTE=Srp1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10725229]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: protein carrier activity [goid GO:0008320] [evidence TAS] [pmid 9442897]; go_process: nucleocytoplasmic transport [goid GO:0006913] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0005133 // SRP1 SGDID:S0005133, Chr XIV from 284259-285887, Verified ORF // sgd // 11 // --- /// GENSCAN00000019889 // cdna:Genscan chromosome:SGD1:XIV:284259:285887:1 // ensembl // 11 // --- /// GENEFINDER00000020595 // cdna:GeneFinder chromosome:SGD1:XIV:284259:285887:1 // ensembl // 11 // --- /// YNL189W // cdna:known chromosome:SGD1:XIV:284259:285887:1 gene:YNL189W // ensembl // 11 // --- --- No cerevisiae_gene 1.29962287465125 1.12289582785863 1.02592233566113 1.19180877592213 1.00763385294068 Max fold change below threshold 4 1.29962287465125 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779475_at YGR231C.S1 Subunit of the prohibitin complex (Phb1p-Phb2p), a 1.2 MDa ring-shaped inner mitochondrial membrane chaperone that stabilizes newly synthesized proteins; determinant of replicative life span; involved in mitochondrial segregation 1.29932697071756 2687.32836914063 2905.81750488281 PHB2 1302 // replicative cell aging // inferred from mutant phenotype /// 6457 // protein folding // inferred from direct assay /// 6457 // protein folding // inferred from physical interaction /// 6457 // protein folding // inferred from sequence similarity /// 45861 // negative regulation of proteolysis and peptidolysis // inferred from mutant phenotype /// 45861 // negative regulation of proteolysis and peptidolysis // inferred from physical interaction 5739 // mitochondrion // inferred from direct assay /// 5743 // mitochondrial inner membrane // inferred from direct assay --- 3061.66162109375 2356.34423828125 3018.3125 2749.97338867188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR231C /GEN=PHB2 /DB_XREF=GI:6321670 /SEG=NC_001139:-952534,953481 /DEF=Possible role in aging /NOTE=Phb2p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence TAS] [pmid 12589040]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 9259555]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence IMP,IPI] [pmid 10207067]; go_process: replicative cell aging [goid GO:0001302] [evidence IMP] [pmid 12882345] --- --- --- --- --- S0003463 // span:37-59 // numtm:1 S0003463 // PHB2 SGDID:S0003463, Chr VII from 953482-952550, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019518 // cdna:Genscan chromosome:SGD1:VII:952550:953482:-1 // ensembl // 11 // --- /// GENEFINDER00000021604 // cdna:GeneFinder chromosome:SGD1:VII:952550:953482:-1 // ensembl // 11 // --- /// YGR231C // cdna:known chromosome:SGD1:VII:952550:953482:-1 gene:YGR231C // ensembl // 11 // --- --- No cerevisiae_gene -1.13657137631585 -1.29932697071756 -1.0400762090983 -1.01436203875303 -1.11334227222192 Max fold change below threshold 4 1.29932697071756 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775268_at YDR462W.S1 Mitochondrial ribosomal protein of the large subunit 1.29887273014232 1926.7529296875 1574.62017822266 MRPL28 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 1529.86682128906 1866.40356445313 1987.10229492188 1619.37353515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR462W /GEN=MRPL28 /DB_XREF=GI:6320670 /SEG=NC_001136:+1386061,1386504 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl28p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0002870 // MRPL28 SGDID:S0002870, Chr IV from 1386063-1386506, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023608 // cdna:GeneFinder chromosome:SGD1:IV:1386063:1386506:1 // ensembl // 11 // --- /// GENSCAN00000025462 // cdna:Genscan chromosome:SGD1:IV:1386063:1386506:1 // ensembl // 11 // --- /// YDR462W // cdna:known chromosome:SGD1:IV:1386063:1386506:1 gene:YDR462W // ensembl // 11 // --- --- No cerevisiae_gene 1.12139592931083 1.21997780361071 1.24170262535458 1.29887273014232 1.05850621284261 Max fold change below threshold 4 1.29887273014232 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774332_at YDL195W.S1 Essential phosphoprotein component (p150) of the COPII coat of secretory pathway vesicles, in complex with Sec13p; required for ER-derived transport vesicle formation 1.29886067567172 2002.05590820313 2053.26171875 SEC31 6888 // ER to Golgi transport // traceable author statement 30127 // COPII vesicle coat // traceable author statement 5198 // structural molecule activity // inferred from physical interaction 2029.21215820313 1800.59130859375 2203.5205078125 2077.31127929688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL195W /GEN=SEC31 /DB_XREF=GI:6320006 /SEG=NC_001136:+107209,111030 /DEF=involved in protein transport from endoplasmic reticulum to Golgi /NOTE=Sec31p; go_component: COPII vesicle coat [goid GO:0030127] [evidence TAS] [pmid 11252894]; go_function: structural molecule activity [goid GO:0005198] [evidence IPI] [pmid 11717432]; go_process: ER to Golgi transport [goid GO:0006888] [evidence TAS] [pmid 11252894] --- --- --- --- --- --- S0002354 // SEC31 SGDID:S0002354, Chr IV from 107209-111030, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023657 // cdna:GeneFinder chromosome:SGD1:IV:107209:111030:1 // ensembl // 11 // --- /// GENSCAN00000024957 // cdna:Genscan chromosome:SGD1:IV:107209:111030:1 // ensembl // 11 // --- /// YDL195W // cdna:known chromosome:SGD1:IV:107209:111030:1 gene:YDL195W // ensembl // 11 // --- --- No cerevisiae_gene -1.29886067567172 -1.12696987290688 -1.22244878539083 1.08589951962624 1.02370334757719 Max fold change below threshold 4 1.29886067567172 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773050_at YGL215W.S1 Cyclin-like protein that interacts with Pho85p; has sequence similarity to G1 cyclins PCL1 and PCL2 1.29837221196406 1336.6025390625 1717.15338134766 CLG1 7049 // cell cycle // traceable author statement 307 // cyclin-dependent protein kinase holoenzyme complex // traceable author statement 16538 // cyclin-dependent protein kinase regulator activity // traceable author statement 1685.81079101563 1298.4033203125 1374.8017578125 1748.49597167969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL215W /GEN=CLG1 /DB_XREF=GI:6321223 /SEG=NC_001139:+87979,89337 /DEF=cyclin-like protein that interacts with Pho85p in affinity chromatography /NOTE=Clg1p; go_component: cyclin-dependent protein kinase holoenzyme complex [goid GO:0000307] [evidence TAS] [pmid 11602261]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS] [pmid 11602261]; go_process: cell cycle [goid GO:0007049] [evidence TAS] [pmid 11602261] --- --- --- --- --- --- S0003183 // CLG1 SGDID:S0003183, Chr VII from 87980-89338, Verified ORF // sgd // 11 // --- /// L11612 // Saccharomyces cerevisiae cyclin-like protein (CLG1) gene, complete cds. // gb // 11 // --- /// GENEFINDER00000021565 // cdna:GeneFinder chromosome:SGD1:VII:88013:89338:1 // ensembl // 11 // --- /// YGL215W // cdna:known chromosome:SGD1:VII:87980:89338:1 gene:YGL215W // ensembl // 11 // --- M96058 // gb // 5 // Negative Strand Matching Probes No cerevisiae_gene -1.05973025462157 -1.29837221196406 -1.2058377579609 -1.22622100345433 1.03718399537963 Max fold change below threshold 4 1.29837221196406 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776891_at YPL232W.S1 Plasma membrane t-SNARE involved in fusion of secretory vesicles at the plasma membrane; forms a complex, with t-SNARE Sec9p, that binds v-SNARE Snc2p; also required for sporulation; syntaxin homolog that is functionally redundant with Sso2p 1.29785574594648 3246.03088378906 2790.72705078125 SSO1 6893 // Golgi to plasma membrane transport // traceable author statement /// 6906 // vesicle fusion // traceable author statement 5887 // integral to plasma membrane // traceable author statement 5486 // t-SNARE activity // traceable author statement 2965.29809570313 3315.37231445313 3176.689453125 2616.15600585938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL232W /GEN=SSO1 /DB_XREF=GI:6325024 /SEG=NC_001148:+107275,108147 /DEF=SSO1 and SSO2 encode syntaxin homologs (post-Golgi t-SNAREs); act in late stages of secretion /NOTE=Sso1p; go_component: integral to plasma membrane [goid GO:0005887] [evidence TAS] [pmid 10047442]; go_function: t-SNARE activity [goid GO:0005486] [evidence TAS] [pmid 10047442]; go_process: Golgi to plasma membrane transport [goid GO:0006893] [evidence TAS] [pmid 10047442]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 10047442] --- --- --- --- --- CAA47959.1 // span:264-286 // numtm:1 /// S0006153 // span:264-286 // numtm:1 S0006153 // SSO1 SGDID:S0006153, Chr XVI from 107275-108147, Verified ORF // sgd // 10 // --- /// X67729 // S.cerevisiae SSO1 mRNA. // gb // 10 // --- /// GENSCAN00000017007 // cdna:Genscan chromosome:SGD1:XVI:107275:108147:1 // ensembl // 10 // --- /// GENEFINDER00000020925 // cdna:GeneFinder chromosome:SGD1:XVI:107275:108147:1 // ensembl // 10 // --- /// YPL232W // cdna:known chromosome:SGD1:XVI:107275:108147:1 gene:YPL232W // ensembl // 10 // --- --- No cerevisiae_gene -1.29785574594648 1.11805700723893 -1.21103172189623 1.07128840022128 -1.13345614292947 Max fold change below threshold 4 1.29785574594648 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775147_at YJR005C-A.S1 Identified by homology to Ashbya gossypii 1.29773388077598 57.8508071899414 60.9182796478271 --- --- --- --- 63.4569511413574 48.8982772827148 66.803337097168 58.3796081542969 0.00292969006113708 0.0239257998764515 0.00585938012227416 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR005C-A /GEN=APL1 /DB_XREF=GI:33438824 /SEG=NC_001142:-448391,448672 /DEF=Identified by homology to Ashbya gossypii /NOTE=Yjr005c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028523 // YJR005C-A SGDID:S0028523, Chr X from 448672-448391, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// YJR005C-A // cdna:known chromosome:SGD1:X:448391:448672:-1 gene:YJR005C-A // ensembl // 10 // --- --- No cerevisiae_gene -1.2588783650592 -1.29773388077598 -1.26324752366075 1.052734742146 -1.08697117277048 Max fold change below threshold 4 1.29773388077598 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1775754_at YLL022C.S1 Non-essential component of the HAT-B histone acetyltransferase complex (Hat1p-Hat2p-Hif1p), localized to the nucleus; has a role in telomeric silencing 1.29754677793198 345.543853759766 386.686447143555 HIF1 6348 // chromatin silencing at telomere // inferred from mutant phenotype 123 // histone acetyltransferase complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay --- 376.140350341797 289.885772705078 401.201934814453 397.232543945313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL022C /GEN=HIF1 /DB_XREF=GI:6323006 /SEG=NC_001144:-99043,100200 /DEF=Non-essential component of the HAT-B histone acetyltransferase complex (Hat1p-Hat2p-Hif1p), localized to the nucleus; has a role in telomeric silencing /NOTE=Hif1p; go_component: histone acetyltransferase complex [goid GO:0000123] [evidence IPI] [pmid 14761951]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14761951]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 14761951] --- --- --- --- --- --- S0003945 // HIF1 SGDID:S0003945, Chr XII from 100200-99043, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017708 // cdna:Genscan chromosome:SGD1:XII:99043:100200:-1 // ensembl // 10 // --- /// GENEFINDER00000024726 // cdna:GeneFinder chromosome:SGD1:XII:99043:100200:-1 // ensembl // 10 // --- /// YLL022C // cdna:known chromosome:SGD1:XII:99043:100200:-1 gene:YLL022C // ensembl // 10 // --- --- No cerevisiae_gene -1.12260841433027 -1.29754677793198 -1.20916629656979 1.06662827970964 1.05607532822349 Max fold change below threshold 4 1.29754677793198 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778263_at YIL087C.S1 Hypothetical protein 1.29660480371616 3304.95617675781 2563.9052734375 --- --- 5739 // mitochondrion // inferred from direct assay --- 2584.994140625 3351.7158203125 3258.19653320313 2542.81640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL087C /GEN=AVT7 /DB_XREF=GI:6322104 /SEG=NC_001141:-199643,200116 /DEF=Hypothetical ORF /NOTE=Yil087cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001349 // YIL087C SGDID:S0001349, Chr IX from 200116-199643, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000019101 // cdna:GeneFinder chromosome:SGD1:IX:199643:200116:-1 // ensembl // 11 // --- /// YIL087C // cdna:known chromosome:SGD1:IX:199643:200116:-1 gene:YIL087C // ensembl // 11 // --- --- No cerevisiae_gene -1.29182734488114 1.29660480371616 1.19741312351862 1.26042704778254 -1.01658701519753 Max fold change below threshold 4 1.29660480371616 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774220_at YHL034C.S1 Nucleolar single-strand nucleic acid binding protein; associates with small nuclear RNAs 1.29632239818384 3921.25183105469 3920.24816894531 SBP1 16070 // RNA metabolism // inferred from physical interaction 5730 // nucleolus // inferred from direct assay 3723 // RNA binding // inferred from direct assay 4152.13330078125 3596.03247070313 4246.47119140625 3688.36303710938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL034C /GEN=SBP1 /DB_XREF=GI:6321753 /SEG=NC_001140:-33191,34075 /DEF=single stranded nucleic acid binding protein /NOTE=Sbp1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 2823109]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 2823109]; go_process: RNA metabolism [goid GO:0016070] [evidence IPI] [pmid 2823109] --- --- --- --- --- --- S0001026 // SBP1 SGDID:S0001026, Chr VIII from 34075-33191, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020177 // cdna:GeneFinder chromosome:SGD1:VIII:33191:34075:-1 // ensembl // 11 // --- /// YHL034C // cdna:known chromosome:SGD1:VIII:33191:34075:-1 gene:YHL034C // ensembl // 11 // --- GENSCAN00000016522 // ensembl // 8 // Cross Hyb Matching Probes /// YHL034W-A // ensembl // 10 // Negative Strand Matching Probes No cerevisiae_gene -1.29632239818384 -1.15464288340238 -1.05125388221194 1.02272034248208 -1.12573877869553 Max fold change below threshold 4 1.29632239818384 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779276_at YML034W.S1 Protein with a putative role in sister chromatid segregation, potentially phosphorylated by Cdc28p; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery 1.29623435443 1179.64361572266 1397.67687988281 SRC1 70 // mitotic sister chromatid segregation // inferred from genetic interaction --- --- 1359.38305664063 1224.37426757813 1134.91296386719 1435.970703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML034W /GEN=SRC1 /DB_XREF=GI:6323607 /SEG=NC_001145:+209525,212155 /DEF=Protein with a putative role in sister chromatid segregation, potentially phosphorylated by Cdc28p; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery /NOTE=Src1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence IGI] --- --- --- --- scop // a.140.1.LEM domain // All alpha proteins; LEM/SAP HeH motif; LEM domain; LEM domain // 1.10000002384186 S0004497 // span:455-474 // numtm:1 S0004497 // SRC1 SGDID:S0004497, Chr XIII from 209525-211444,211571-212155, intron sequence removed, Verified ORF // sgd // 10 // --- /// YML034W // cdna:known chromosome:SGD1:XIII:209525:212155:1 gene:YML034W // ensembl // 10 // --- --- No cerevisiae_gene -1.29623435443 -1.11026758127607 1.07057555154576 -1.19778617384769 1.05634000373202 Max fold change below threshold 4 1.29623435443 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780070_at YBR046C.S1 Zeta-crystallin homolog, found in the cytoplasm and nucleus; has similarity to E. coli quinone oxidoreductase and to human zeta-crystallin, which has quinone oxidoreductase activity 1.29596258171673 1978.9140625 1759.15771484375 ZTA1 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1852.74145507813 2011.15490722656 1946.67321777344 1665.57397460938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR046C /GEN=ZTA1 /DB_XREF=GI:6319520 /SEG=NC_001134:-330467,331471 /DEF=Zeta-crystallin homolog, found in the cytoplasm and nucleus; has similarity to E. coli quinone oxidoreductase and to human zeta-crystallin, which has quinone oxidoreductase activity /NOTE=Zta1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000250 // ZTA1 SGDID:S0000250, Chr II from 331509-330505, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021177 // cdna:Genscan chromosome:SGD1:II:330505:331509:-1 // ensembl // 11 // --- /// GENEFINDER00000022116 // cdna:GeneFinder chromosome:SGD1:II:330505:331509:-1 // ensembl // 11 // --- /// YBR046C // cdna:known chromosome:SGD1:II:330505:331509:-1 gene:YBR046C // ensembl // 11 // --- --- No cerevisiae_gene -1.29596258171673 1.08550219012709 1.04787029724876 1.0506987968763 -1.11237416249413 Max fold change below threshold 4 1.29596258171673 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769791_at YDR168W.S1 Essential Hsp90p co-chaperone; necessary for passage through the START phase of the cell cycle 1.29553706843677 1464.62646484375 1219.27416992188 CDC37 74 // regulation of cell cycle // inferred from mutant phenotype /// 7103 // spindle pole body duplication in nuclear envelope // inferred from mutant phenotype /// 7103 // spindle pole body duplication in nuclear envelope // inferred from genetic interaction /// 7165 // signal transduction // traceable author statement 5737 // cytoplasm // inferred from direct assay 51082 // unfolded protein binding // inferred from direct assay 1173.70471191406 1443.22668457031 1486.02624511719 1264.84362792969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR168W /GEN=CDC37 /DB_XREF=GI:6320372 /SEG=NC_001136:+790322,791842 /DEF=Essential Hsp90p co-chaperone; necessary for passage through the START phase of the cell cycle /NOTE=Cdc37p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: chaperone activity [goid GO:0003754] [evidence IDA] [pmid 9242486]; go_process: regulation of cell cycle [goid GO:0000074] [evidence IMP] [pmid 7753858]; go_process: signal transduction [goid GO:0007165] [evidence TAS] [pmid 9242486]; go_process: spindle pole body duplication (sensu Saccharomyces) [goid GO:0007103] [evidence IGI,IMP] [pmid 9060463] --- --- --- --- --- --- S0002575 // CDC37 SGDID:S0002575, Chr IV from 790323-791843, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023810 // cdna:GeneFinder chromosome:SGD1:IV:790323:791843:1 // ensembl // 11 // --- /// GENSCAN00000025223 // cdna:Genscan chromosome:SGD1:IV:790323:791843:1 // ensembl // 11 // --- /// YDR168W // cdna:known chromosome:SGD1:IV:790323:791843:1 gene:YDR168W // ensembl // 11 // --- --- No cerevisiae_gene -1.29553706843677 1.22963354404254 1.06282555289455 1.26609890037316 1.07765063485772 Max fold change below threshold 4 1.29553706843677 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772401_at YDR485C.S1 Protein of unknown function, component of the Swr1p complex that incorporates Htz1p into chromatin; required for vacuolar protein sorting 1.29528179282252 882.412933349609 833.218902587891 VPS72 6338 // chromatin remodeling // inferred from direct assay /// 6338 // chromatin remodeling // inferred from genetic interaction /// 6338 // chromatin remodeling // inferred from physical interaction /// 6623 // protein-vacuolar targeting // inferred from mutant phenotype 812 // SWR1 complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 787.2265625 832.910766601563 931.915100097656 879.211242675781 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR485C /GEN=VPS72 /DB_XREF=GI:37362638 /SEG=NC_001136:-1424808,1427195 /DEF=Protein of unknown function, component of the Swr1p complex that incorporates Htz1p into chromatin; required for vacuolar protein sorting /NOTE=Vps72p; go_component: SWR1 complex [goid GO:0000812] [evidence IPI] [pmid 14690608]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 14645854]; go_process: chromatin remodeling [goid GO:0006338] [evidence IGI,IPI] [pmid 14690608]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 12134085] --- --- --- --- --- --- S0002893 // VPS72 SGDID:S0002893, Chr IV from 1427197-1424810, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023605 // cdna:GeneFinder chromosome:SGD1:IV:1424810:1427197:-1 // ensembl // 11 // --- /// GENSCAN00000025480 // cdna:Genscan chromosome:SGD1:IV:1424810:1427197:-1 // ensembl // 11 // --- /// YDR485C // cdna:known chromosome:SGD1:IV:1424810:1427197:-1 gene:YDR485C // ensembl // 11 // --- --- No cerevisiae_gene -1.29528179282252 1.05803183769166 -1.02795344580533 1.18379529412494 1.11684651478688 Max fold change below threshold 4 1.29528179282252 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771317_at YMR071C.S1 Tlg2-Vesicle Protein of 18 kDa, integral membrane vesicle protein 1.29510449392853 3090.34533691406 2841.64147949219 --- --- 30136 // clathrin-coated vesicle // inferred from direct assay --- 2989.462890625 3491.19165039063 2689.4990234375 2693.82006835938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR071C /GEN=MOT3 /DB_XREF=GI:6323716 /SEG=NC_001145:-410761,411264 /DEF=Tlg2-Vesicle Protein of 18 kDa /NOTE=Ymr071cp --- --- --- --- --- S0004675 // span:25-47,52-74,106-128 // numtm:3 S0004675 // TVP18 SGDID:S0004675, Chr XIII from 411264-410761, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YMR071C // cdna:known chromosome:SGD1:XIII:410761:411264:-1 gene:YMR071C // ensembl // 11 // --- GENEFINDER00000022062 // ensembl // 4 // Cross Hyb Matching Probes No cerevisiae_gene -1.29510449392853 1.16783240940674 1.03908658667651 -1.11153150254879 -1.10974854101732 Max fold change below threshold 4 1.29510449392853 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779802_at SPAC11D3.11c.S1 --- 1.29497445416816 --- --- --- --- 1.35503113269806 1.52061796188354 1.75473070144653 1.14873337745667 0.567627012729645 0.432372987270355 0.567627012729645 0.888427972793579 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC11D3.11c /DEF=pseudogene --- --- --- --- --- --- SPAC11D3.11c // |||pseudogene|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.08329045269897 1.12220149426071 1.15847758718903 1.29497445416816 -1.17958715163143 Max fold change below threshold 0 1.29497445416816 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1773486_at YER063W.S1 Protein of unknown function; overproduction suppresses the transcriptional defect caused by an hpr1 mutation 1.29471545060804 1367.37561035156 1386.21954345703 THO1 6351 // transcription, DNA-dependent // inferred from genetic interaction 5634 // nucleus // inferred from direct assay --- 1436.83349609375 1376.26123046875 1358.48999023438 1335.60559082031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER063W /GEN=THO1 /DB_XREF=GI:6320906 /SEG=NC_001137:+281708,282364 /DEF=Suppressor of the Transcriptional (T) defect of Hpr1 (H) by Overexpression (O) /NOTE=Tho1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: transcription, DNA-dependent [goid GO:0006351] [evidence IGI] [pmid 9707445] --- --- --- --- scop // a.140.2.SAP domain // All alpha proteins; LEM/SAP HeH motif; SAP domain; SAP domain // 7.00000005186224E-17 --- S0000865 // THO1 SGDID:S0000865, Chr V from 281708-282364, Verified ORF // sgd // 11 // --- /// GENSCAN00000016857 // cdna:Genscan chromosome:SGD1:V:281708:282364:1 // ensembl // 11 // --- /// GENEFINDER00000019576 // cdna:GeneFinder chromosome:SGD1:V:281708:282364:1 // ensembl // 11 // --- /// YER063W // cdna:known chromosome:SGD1:V:281708:282364:1 gene:YER063W // ensembl // 11 // --- --- No cerevisiae_gene 1.29471545060804 -1.04401218626523 -1.23797122127673 -1.05766954959003 -1.07579176515072 Max fold change below threshold 4 1.29471545060804 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774146_at YNL136W.S1 Subunit of the NuA4 histone acetyltransferase complex, which acetylates the N-terminal tails of histones H4 and H2A 1.2945939298321 469.550857543945 458.068588256836 EAF7 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from physical interaction /// 16573 // histone acetylation // inferred from physical interaction 123 // histone acetyltransferase complex // inferred from direct assay /// 5634 // nucleus // inferred from direct assay /// 43189 // H4/H2A histone acetyltransferase complex // inferred from physical interaction --- 426.939666748047 552.713500976563 386.388214111328 489.197509765625 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL136W /GEN=NAM9 /DB_XREF=GI:6324193 /SEG=NC_001146:+370368,371645 /DEF=Subunit of the NuA4 histone acetyltransferase complex /NOTE=Ynl136wp --- --- --- --- --- --- S0005080 // EAF7 SGDID:S0005080, Chr XIV from 370368-371645, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020664 // cdna:GeneFinder chromosome:SGD1:XIV:370479:371645:1 // ensembl // 11 // --- /// YNL136W // cdna:known chromosome:SGD1:XIV:370368:371645:1 gene:YNL136W // ensembl // 11 // --- M63892 // gb // 2 // Negative Strand Matching Probes No cerevisiae_gene -1.12577475699811 1.2945939298321 -1.13880901555167 -1.1049500247568 1.14582351527978 Max fold change below threshold 4 1.2945939298321 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780174_at YOR014W.S1 B-type regulatory subunit of protein phosphatase 2A (PP2A); homolog of the mammalian B' subunit of PP2A 1.2944642408181 1045.45108032227 981.902038574219 RTS1 6412 // protein biosynthesis // inferred from sequence similarity /// 6470 // protein amino acid dephosphorylation // traceable author statement 159 // protein phosphatase type 2A complex // traceable author statement /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5816 // spindle pole body // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 158 // protein phosphatase type 2A activity // traceable author statement 948.400634765625 967.180236816406 1123.72192382813 1015.40344238281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR014W /GEN=RTS1 /DB_XREF=GI:6324588 /SEG=NC_001147:+357673,359946 /DEF=B-type regulatory subunit of protein phosphatase 2A (PP2A) /NOTE=Rts1p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 12388751]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12388751]; go_component: protein phosphatase type 2A complex [goid GO:0000159] [evidence TAS] [pmid 10329624]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 12388751]; go_function: protein phosphatase type 2A activity [goid GO:0000158] [evidence TAS] [pmid 10329624]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence TAS] [pmid 9001215]; go_process: protein biosynthesis [goid GO:0006412] [evidence ISS] [pmid 10329624] --- --- --- --- --- --- S0005540 // RTS1 SGDID:S0005540, Chr XV from 357673-359946, Verified ORF // sgd // 11 // --- /// GENSCAN00000017477 // cdna:Genscan chromosome:SGD1:XV:358123:359946:1 // ensembl // 11 // --- /// YOR014W // cdna:known chromosome:SGD1:XV:357673:359946:1 gene:YOR014W // ensembl // 11 // --- --- No cerevisiae_gene -1.2944642408181 1.01980133855079 1.27115924759225 1.18485994487533 1.07064821043034 Max fold change below threshold 4 1.2944642408181 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778440_at YDR391C.S1 Hypothetical protein 1.29441388441977 1579.37847900391 1867.42016601563 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1858.63818359375 1435.89172363281 1722.865234375 1876.2021484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR391C /GEN=UBA2 /DB_XREF=GI:6320599 /SEG=NC_001136:-1257346,1258044 /DEF=Hypothetical ORF /NOTE=Ydr391cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002799 // YDR391C SGDID:S0002799, Chr IV from 1258046-1257348, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023912 // cdna:GeneFinder chromosome:SGD1:IV:1257348:1258046:-1 // ensembl // 11 // --- /// GENSCAN00000025410 // cdna:Genscan chromosome:SGD1:IV:1257348:1258046:-1 // ensembl // 11 // --- /// YDR391C // cdna:known chromosome:SGD1:IV:1257348:1258046:-1 gene:YDR391C // ensembl // 11 // --- --- No cerevisiae_gene -1.07622711456933 -1.29441388441977 1.26968945939975 -1.07880648266027 1.00944991069203 Max fold change below threshold 4 1.29441388441977 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778695_at YOR164C.S1 Hypothetical protein 1.29392718537099 715.598388671875 729.124450683594 --- --- 5737 // cytoplasm // inferred from direct assay --- 690.155517578125 589.949645996094 841.247131347656 768.093383789063 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR164C /GEN=DDP1 /DB_XREF=GI:6324738 /SEG=NC_001147:-643394,644332 /DEF=Hypothetical ORF /NOTE=Yor164cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005690 // YOR164C SGDID:S0005690, Chr XV from 644332-643394, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YOR164C // cdna:known chromosome:SGD1:XV:643394:644332:-1 gene:YOR164C // ensembl // 11 // --- --- No cerevisiae_gene 1.22801699543348 -1.16985495671048 1.29392718537099 1.21892401048931 1.11292797670362 Max fold change below threshold 4 1.29392718537099 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774713_at YER012W.S1 20S proteasome beta-type subunit; localizes to the nucleus throughout the cell cycle 1.29303446006518 2515.30822753906 2186.54907226563 PRE1 6511 // ubiquitin-dependent protein catabolism // traceable author statement /// 6950 // response to stress // traceable author statement /// 30437 // sporulation (sensu Fungi) // traceable author statement 5634 // nucleus // inferred from direct assay /// 19774 // proteasome core complex, beta-subunit complex (sensu Eukaryota) // traceable author statement /// 19774 // proteasome core complex, beta-subunit complex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement 2203.17114257813 2408.55932617188 2622.05712890625 2169.92700195313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER012W /GEN=PRE1 /DB_XREF=GI:6320849 /SEG=NC_001137:+177834,178430 /DEF=20S proteasome beta-type subunit; localizes to the nucleus throughout the cell cycle /NOTE=Pre1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10419517]; go_component: proteasome core complex (sensu Eukarya) [goid GO:0005839] [evidence TAS] [pmid 10872471]; go_component: proteasome core complex, beta-subunit complex (sensu Eukarya) [goid GO:0019774] [evidence TAS] [pmid 10500111]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 10872471]; go_process: response to stress [goid GO:0006950] [evidence TAS] [pmid 8982460]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence TAS] [pmid 8982460]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10872471] --- --- --- --- --- --- S0000814 // PRE1 SGDID:S0000814, Chr V from 177834-178430, Verified ORF // sgd // 11 // --- /// GENSCAN00000016814 // cdna:Genscan chromosome:SGD1:V:177834:178430:1 // ensembl // 11 // --- /// YER012W // cdna:known chromosome:SGD1:V:177834:178430:1 gene:YER012W // ensembl // 11 // --- --- No cerevisiae_gene -1.29303446006518 1.09322388970355 1.15998523523831 1.19012866419354 -1.01532039584515 Max fold change below threshold 4 1.29303446006518 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776734_at YHR027C.S1 Non-ATPase base subunit of the 19S regulatory particle of the 26S proteasome; may participate in the recognition of several ligands of the proteasome; contains a leucine-rich repeat (LRR) domain, a site for protein?protein interactions 1.29234829706125 4365.27880859375 3656.04931640625 RPN1 6511 // ubiquitin-dependent protein catabolism // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 8540 // proteasome regulatory particle, base subcomplex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement /// 4872 // receptor activity // inferred from direct assay 3811.31591796875 4707.51708984375 4023.04052734375 3500.78271484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR027C /GEN=RPN1 /DB_XREF=GI:6321816 /SEG=NC_001140:-161722,164703 /DEF=Subunit of 26S Proteasome (PA700 subunit) /NOTE=Rpn1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11914276]; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence TAS] [pmid 9697412]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 9697412]; go_function: receptor activity [goid GO:0004872] [evidence IDA] [pmid 12200120]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 9697412] --- --- --- --- --- --- S0001069 // RPN1 SGDID:S0001069, Chr VIII from 164703-161722, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016575 // cdna:Genscan chromosome:SGD1:VIII:161722:164703:-1 // ensembl // 11 // --- /// GENEFINDER00000020216 // cdna:GeneFinder chromosome:SGD1:VIII:161722:164703:-1 // ensembl // 11 // --- /// YHR027C // cdna:known chromosome:SGD1:VIII:161722:164703:-1 gene:YHR027C // ensembl // 11 // --- --- No cerevisiae_gene -1.29234829706125 1.23514219003725 -1.14580510622981 1.05555157691778 -1.08870393521092 Max fold change below threshold 4 1.29234829706125 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778453_s_at YFL060C.S1 Protein of unknown function, nearly identical to Sno3p; expression is induced before the diauxic shift and also in the absence of thiamin /// Protein of unknown function, nearly identical to Sno2p; expression is induced before the diauxic shift and also in the absence of thiamin 1.29234629432165 55.7410182952881 53.6283626556396 SNO2 /// SNO3 8614 // pyridoxine metabolism // inferred from direct assay /// 8614 // pyridoxine metabolism // inferred from sequence similarity /// 9228 // thiamin biosynthesis // inferred from mutant phenotype --- --- 48.9970703125 48.1608543395996 63.3211822509766 58.2596549987793 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL060C /GEN=SNO3 /DB_XREF=GI:14318459 /SEG=NC_001138:-10301,10969 /DEF=Protein of unknown function, nearly identical to Sno2p; expression is induced before the diauxic shift and also in the absence of thiamin /NOTE=Sno3p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: pyridoxine metabolism [goid GO:0008614] [evidence ISS] [pmid 10438537]; go_process: pyridoxine metabolism [goid GO:0008614] [evidence IDA] [pmid 9791124]; go_process: thiamin biosynthesis [goid GO:0009228] [evidence IMP] [pmid 12271461] --- --- --- --- --- --- S0001834 // SNO3 SGDID:S0001834, Chr VI from 10969-10301, reverse complement, Verified ORF // sgd // 11 // --- /// S0005278 // SNO2 SGDID:S0005278, Chr XIV from 12876-12208, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018540 // cdna:GeneFinder chromosome:SGD1:VI:10301:10969:-1 // ensembl // 11 // --- /// GENSCAN00000023190 // cdna:Genscan chromosome:SGD1:VI:10301:10855:-1 // ensembl // 11 // --- /// GENSCAN00000019776 // cdna:Genscan chromosome:SGD1:XIV:12208:12762:-1 // ensembl // 11 // --- /// GENEFINDER00000020415 // cdna:GeneFinder chromosome:SGD1:XIV:12208:12876:-1 // ensembl // 11 // --- /// YFL060C // cdna:known chromosome:SGD1:VI:10301:10969:-1 gene:YFL060C // ensembl // 11 // --- /// YNL334C // cdna:known chromosome:SGD1:XIV:12208:12876:-1 gene:YNL334C // ensembl // 11 // --- --- No cerevisiae_gene -1.16474475395999 -1.01736298046135 1.25702242117274 1.29234629432165 1.18904364336894 Max fold change below threshold 4 1.29234629432165 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772824_at YDR169C.S1 Protein that binds Sin3p in a two-hybrid assay 1.29133884337924 975.363677978516 900.382720947266 STB3 --- 5737 // cytoplasm // inferred from direct assay --- 864.129211425781 941.153137207031 1009.57421875 936.63623046875 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR169C /GEN=STB3 /DB_XREF=GI:6320373 /SEG=NC_001136:-792342,793883 /DEF=binds Sin3p in two-hybrid assay /NOTE=Stb3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002576 // STB3 SGDID:S0002576, Chr IV from 793884-792343, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023618 // cdna:GeneFinder chromosome:SGD1:IV:792343:793884:-1 // ensembl // 11 // --- /// GENSCAN00000025224 // cdna:Genscan chromosome:SGD1:IV:792343:793884:-1 // ensembl // 11 // --- /// YDR169C // cdna:known chromosome:SGD1:IV:792343:793884:-1 gene:YDR169C // ensembl // 11 // --- --- No cerevisiae_gene -1.29133884337924 1.08913473212434 1.1521864870712 1.16831395745115 1.08390761252398 Max fold change below threshold 4 1.29133884337924 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777029_at YFR040W.S1 Protein that forms a complex with the Sit4p protein phosphatase and is required for its function; member of a family of similar proteins including Sap4p, Sap185p, and Sap190p 1.29122717975566 1061.47955322266 1042.91500854492 SAP155 82 // G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 82 // G1/S transition of mitotic cell cycle // inferred from physical interaction /// 82 // G1/S transition of mitotic cell cycle // inferred from genetic interaction 5737 // cytoplasm // inferred from physical interaction 4722 // protein serine/threonine phosphatase activity // inferred from physical interaction 950.511413574219 1054.63452148438 1068.32458496094 1135.31860351563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR040W /GEN=SAP155 /DB_XREF=GI:37362647 /SEG=NC_001138:+234229,237237 /DEF=Protein that forms a complex with the Sit4p protein phosphatase and is required for its function; member of a family of similar proteins including Sap4p, Sap185p, and Sap190p /NOTE=Sap155p; go_component: cytoplasm [goid GO:0005737] [evidence IPI] [pmid 8649382]; go_function: protein serine/threonine phosphatase activity [goid GO:0004722] [evidence IPI] [pmid 8649382]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IGI,IMP,IPI] [pmid 8649382] --- --- --- --- --- --- S0001936 // SAP155 SGDID:S0001936, Chr VI from 234229-237237, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018542 // cdna:GeneFinder chromosome:SGD1:VI:234229:237237:1 // ensembl // 11 // --- /// GENSCAN00000023278 // cdna:Genscan chromosome:SGD1:VI:234229:237237:1 // ensembl // 11 // --- /// YFR040W // cdna:known chromosome:SGD1:VI:234229:237237:1 gene:YFR040W // ensembl // 11 // --- --- No cerevisiae_gene -1.23539340398098 1.10954430049253 1.29122717975566 1.12394714014396 1.19442921705324 Max fold change below threshold 4 1.29122717975566 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775187_at SPCC23B6.04c.S1 --- 1.29122046392841 --- --- --- --- 9.37273502349854 12.1022672653198 9.70077514648438 8.04844188690186 0.030273400247097 0.129638999700546 0.00805663969367743 0.018554700538516 P A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPCC23B6.04c /DEF=CRALTRIO domain --- --- --- --- --- --- SPCC23B6.04c // |||CRAL/TRIO domain|Schizosaccharomyces pombe|chr 3|||Manual // sanger // 10 // --- --- No No -1.27165482396916 1.29122046392841 1.1005741234887 1.03499940221967 -1.16454031167844 Max fold change below threshold 4 1.29122046392841 Max fold change below threshold PPAPPP No 4 0 PAPP 1 3 0 No No 2 < x = 3
1774111_at YMR012W.S1 eIF3 component of unknown function; deletion causes defects in mitochondrial organization but not in growth or translation initiation, can rescue cytokinesis and mitochondrial organization defects of the Dictyostelium cluA- mutant 1.2911629567002 1339.10620117188 1415.89880371094 CLU1 6413 // translational initiation // inferred from physical interaction /// 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5852 // eukaryotic translation initiation factor 3 complex // inferred from physical interaction --- 1357.50622558594 1051.38256835938 1626.82983398438 1474.29138183594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR012W /GEN=CLU1 /DB_XREF=GI:6323654 /SEG=NC_001145:+291133,294966 /DEF=CLU1 is similar to the Dictyostelium cluA gene /NOTE=Clu1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: eukaryotic translation initiation factor 3 complex [goid GO:0005852] [evidence IPI] [pmid 10358023]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence IMP] [pmid 9601101]; go_process: translational initiation [goid GO:0006413] [evidence IPI] [pmid 10358023] --- --- --- --- scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 1.89999997615814 --- S0004614 // CLU1 SGDID:S0004614, Chr XIII from 291133-294966, Verified ORF // sgd // 11 // --- /// GENSCAN00000018727 // cdna:Genscan chromosome:SGD1:XIII:291697:294966:1 // ensembl // 11 // --- /// GENEFINDER00000022091 // cdna:GeneFinder chromosome:SGD1:XIII:291697:294966:1 // ensembl // 11 // --- /// YMR012W // cdna:known chromosome:SGD1:XIII:291133:294966:1 gene:YMR012W // ensembl // 11 // --- --- No cerevisiae_gene 1.13974230558155 -1.2911629567002 1.03706235520796 1.19839585507771 1.0860291864957 Max fold change below threshold 4 1.2911629567002 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770099_at YGL048C.S1 One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates; bound by ubiquitin-protein ligases Ubr1p and Ufd4p; localized mainly to the nucleus throughout the cell cycle 1.29099002617288 2764.9248046875 2140.63623046875 RPT6 6511 // ubiquitin-dependent protein catabolism // traceable author statement 5634 // nucleus // inferred from direct assay /// 8540 // proteasome regulatory particle, base subcomplex (sensu Eukaryota) // inferred from direct assay /// 8540 // proteasome regulatory particle, base subcomplex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement /// 16887 // ATPase activity // traceable author statement /// 16887 // ATPase activity // inferred from direct assay 2180.04663085938 2715.43115234375 2814.41845703125 2101.22583007813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL048C /GEN=RPT6 /DB_XREF=GI:6321390 /SEG=NC_001139:-410070,411287 /DEF=member of the 26 S proteasome /NOTE=Rpt6p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10419517]; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence TAS] [pmid 9697412]; go_component: proteasome regulatory particle, base subcomplex (sensu Eukarya) [goid GO:0008540] [evidence IDA] [pmid 11742986]; go_function: ATPase activity [goid GO:0016887] [evidence TAS] [pmid 9697412]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 9697412]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 9697412] --- --- --- --- --- --- S0003016 // RPT6 SGDID:S0003016, Chr VII from 411289-410072, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019308 // cdna:Genscan chromosome:SGD1:VII:410072:411289:-1 // ensembl // 11 // --- /// GENEFINDER00000021494 // cdna:GeneFinder chromosome:SGD1:VII:410072:411289:-1 // ensembl // 11 // --- /// YGL048C // cdna:known chromosome:SGD1:VII:410072:411289:-1 gene:YGL048C // ensembl // 11 // --- --- No cerevisiae_gene -1.09629920010843 1.24558397692316 -1.04326170736329 1.29099002617288 -1.03751181793645 Max fold change below threshold 4 1.29099002617288 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775579_at SPAP11E10.02c.S1 --- 1.29096645399651 --- --- --- --- 4.75074863433838 3.80492091178894 4.56096887588501 4.20251703262329 0.334473013877869 0.194580003619194 0.0952147990465164 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAP11E10.02c /DEF=hypothetical protein --- --- --- --- --- --- SPAP11E10.02c // ||SPAPB1A10.01c|hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.29096645399651 -1.2485801267561 1.05784668979615 -1.04160952718989 -1.13045315401681 Max fold change below threshold 4 1.29096645399651 Max fold change below threshold AAAPAA No 4 0 AAAA 4 0 0 No No x = 1
1776994_at YEL002C.S1 Beta subunit of the oligosaccharyl transferase (OST) glycoprotein complex; required for N-linked glycosylation of proteins in the endoplasmic reticulum 1.29039865294786 2215.28015136719 2718.84020996094 WBP1 6487 // N-linked glycosylation // inferred from physical interaction /// 7049 // cell cycle // inferred from direct assay 5635 // nuclear membrane // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 8250 // oligosaccharyl transferase complex // inferred from physical interaction 4579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from physical interaction 2799.92407226563 2169.81323242188 2260.7470703125 2637.75634765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL002C /GEN=WBP1 /DB_XREF=GI:6320835 /SEG=NC_001137:-148721,150013 /DEF=wheat germ agglutinin-binding protein /NOTE=Wbp1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 1724755]; go_component: nuclear membrane [goid GO:0005635] [evidence IDA] [pmid 1724755]; go_component: oligosaccharyl transferase complex [goid GO:0008250] [evidence IPI] [pmid 10358084]; go_function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity [goid GO:0004579] [evidence IPI] [pmid 9405463]; go_process: N-linked glycosylation [goid GO:0006487] [evidence IPI] [pmid 9405463]; go_process: cell cycle [goid GO:0007049] [evidence IDA] [pmid 1724755] --- --- --- --- --- S0000728 // span:393-415 // numtm:1 S0000728 // WBP1 SGDID:S0000728, Chr V from 150013-148721, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016801 // cdna:Genscan chromosome:SGD1:V:148721:150013:-1 // ensembl // 11 // --- /// GENEFINDER00000019675 // cdna:GeneFinder chromosome:SGD1:V:148721:150013:-1 // ensembl // 11 // --- /// YEL002C // cdna:known chromosome:SGD1:V:148721:150013:-1 gene:YEL002C // ensembl // 11 // --- --- No cerevisiae_gene -1.15262898858908 -1.29039865294786 -1.09622113282378 -1.2384950572461 -1.06147941782169 Max fold change below threshold 4 1.29039865294786 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776401_at YLR058C.S1 serine hydroxymethyltransferase 1.29033051801364 1325.57977294922 1722.96557617188 SHM2 6730 // one-carbon compound metabolism // traceable author statement 5737 // cytoplasm // traceable author statement 4372 // glycine hydroxymethyltransferase activity // traceable author statement 1650.03845214844 1302.32897949219 1348.83056640625 1795.89270019531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR058C /GEN=SHM2 /DB_XREF=GI:6323087 /SEG=NC_001144:-257993,259402 /DEF=serine hydroxymethyltransferase /NOTE=Shm2p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 8852837]; go_function: glycine hydroxymethyltransferase activity [goid GO:0004372] [evidence TAS] [pmid 8852837]; go_process: one-carbon compound metabolism [goid GO:0006730] [evidence TAS] [pmid 8852837] --- --- --- --- --- --- S0004048 // SHM2 SGDID:S0004048, Chr XII from 259402-257993, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017865 // cdna:Genscan chromosome:SGD1:XII:257993:259402:-1 // ensembl // 11 // --- /// GENEFINDER00000024657 // cdna:GeneFinder chromosome:SGD1:XII:257993:259402:-1 // ensembl // 11 // --- /// YLR058C // cdna:known chromosome:SGD1:XII:257993:259402:-1 gene:YLR058C // ensembl // 11 // --- --- No cerevisiae_gene 1.16871366412138 -1.26699050557243 1.29033051801364 -1.2233103943846 1.08839445399407 Max fold change below threshold 4 1.29033051801364 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
RPTR-Sc-J01347-4_at AFFX-Sc-J01347-4 --- 1.29027062009928 --- --- --- --- 3223.6513671875 2740.96557617188 3127.56591796875 3067.60424804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP CONTROL J01347 /FEA=CDS_4 /DB_XREF=AAB59343.1 GI:172194 /NOTE=Rep 2 protein --- --- --- --- --- --- AFFX-Sc-J01347-4 // --- // affx // --- // --- --- No No -1.29027062009928 -1.17610063957453 1.09756176804799 -1.03072211801091 -1.05086937770411 Max fold change below threshold 4 1.29027062009928 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770337_at YKL059C.S1 Essential conserved subunit of CPF (cleavage and polyadenylation factor), plays a role in 3' end formation of mRNA via the specific cleavage and polyadenylation of pre-mRNA, contains a putative RNA-binding zinc knuckle motif 1.29026376280965 751.188507080078 956.889953613281 MPE1 6378 // mRNA polyadenylylation // inferred from genetic interaction /// 6378 // mRNA polyadenylylation // inferred from direct assay /// 6378 // mRNA polyadenylylation // inferred from physical interaction /// 6378 // mRNA polyadenylylation // inferred from mutant phenotype /// 6379 // mRNA cleavage // inferred from genetic interaction /// 6379 // mRNA cleavage // inferred from direct assay /// 6379 // mRNA cleavage // inferred from physical interaction /// 6379 // mRNA cleavage // inferred from mutant phenotype 5847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from physical interaction 3723 // RNA binding // inferred from curator 893.1787109375 692.245056152344 810.131958007813 1020.60119628906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL059C /GEN=MPE1 /DB_XREF=GI:6322791 /SEG=NC_001143:-327763,329088 /DEF=Protein required for cell viability /NOTE=Mpe1p; go_component: mRNA cleavage and polyadenylation specificity factor complex [goid GO:0005847] [evidence IPI] [pmid 11713271]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mRNA cleavage [goid GO:0006379] [evidence IDA,IGI,IMP,IPI] [pmid 11713271]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IDA,IGI,IMP,IPI] [pmid 11713271] --- --- --- --- --- --- S0001542 // MPE1 SGDID:S0001542, Chr XI from 329088-327763, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018373 // cdna:Genscan chromosome:SGD1:XI:327763:329088:-1 // ensembl // 11 // --- /// GENEFINDER00000023169 // cdna:GeneFinder chromosome:SGD1:XI:327763:329088:-1 // ensembl // 11 // --- /// YKL059C // cdna:known chromosome:SGD1:XI:327763:329088:-1 gene:YKL059C // ensembl // 11 // --- --- No cerevisiae_gene 1.09111429399255 -1.29026376280965 -1.06255098525199 -1.10251015542444 1.14266180305374 Max fold change below threshold 4 1.29026376280965 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773548_at YJR048W.S1 Cytochrome c, isoform 1; electron carrier of the mitochondrial intermembrane space that transfers electrons from ubiquinone-cytochrome c oxidoreductase to cytochrome c oxidase during cellular respiration 1.28982526012922 4648.17431640625 4149.20837402344 CYC1 6118 // electron transport // traceable author statement 5758 // mitochondrial intermembrane space // inferred from direct assay 9055 // electron carrier activity // traceable author statement 4674.37744140625 5063.853515625 4232.4951171875 3624.03930664063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR048W /GEN=CYC1 /DB_XREF=GI:6322508 /SEG=NC_001142:+526249,526578 /DEF=Cytochrome c, isoform 1; electron carrier of the mitochondrial intermembrane space that transfers electrons from ubiquinone-cytochrome c oxidoreductase to cytochrome c oxidase during cellular respiration /NOTE=Cyc1p; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence IDA] [pmid 9866716]; go_function: electron carrier activity [goid GO:0009055] [evidence TAS] [pmid 8621494]; go_process: electron transport [goid GO:0006118] [evidence TAS] [pmid 8621494] --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 0.0 --- S0003809 // CYC1 SGDID:S0003809, Chr X from 526249-526578, Verified ORF // sgd // 11 // --- /// GENEFINDER00000024486 // cdna:GeneFinder chromosome:SGD1:X:526249:526578:1 // ensembl // 11 // --- /// YJR048W // cdna:known chromosome:SGD1:X:526249:526578:1 gene:YJR048W // ensembl // 11 // --- --- No cerevisiae_gene -1.24949170315321 1.08332148593067 -1.14382985750047 -1.10440232344849 -1.28982526012922 Max fold change below threshold 4 1.28982526012922 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770001_at YDR516C.S1 Non-essential protein of unknown function required for transcriptional induction of the early meiotic-specific transcription factor IME1, also required for sporulation 1.28979163728249 4739.54931640625 4709.13061523438 EMI2 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 5268.86181640625 5394.0498046875 4085.048828125 4149.3994140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR516C /GEN=EMI2 /DB_XREF=GI:6320724 /SEG=NC_001136:-1474962,1476464 /DEF=Non-essential protein of unknown function required for transcriptional induction of the early meiotic-specific transcription factor IME1, also required for sporulation /NOTE=Emi2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 12586695] --- --- --- --- --- --- S0002924 // EMI2 SGDID:S0002924, Chr IV from 1476466-1474964, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023876 // cdna:GeneFinder chromosome:SGD1:IV:1474964:1476466:-1 // ensembl // 11 // --- /// GENSCAN00000025502 // cdna:Genscan chromosome:SGD1:IV:1474964:1476466:-1 // ensembl // 11 // --- /// YDR516C // cdna:known chromosome:SGD1:IV:1474964:1476466:-1 gene:YDR516C // ensembl // 11 // --- --- No cerevisiae_gene -1.18416214547577 1.02375996802411 -1.17086631243967 -1.28979163728249 -1.2697890202013 Max fold change below threshold 4 1.28979163728249 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772185_at YNL051W.S1 Component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tethering complex that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments 1.28915636886203 486.18196105957 527.27946472168 COG5 6891 // intra-Golgi transport // inferred from physical interaction /// 6891 // intra-Golgi transport // inferred from genetic interaction 17119 // Golgi transport complex // inferred from physical interaction --- 503.763458251953 499.132476806641 473.2314453125 550.795471191406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL051W /GEN=COG5 /DB_XREF=GI:6324277 /SEG=NC_001146:+532657,533868 /DEF=Conserved Oligomeric Golgi complex 5 Complexed with Cog8p /NOTE=Cog5p; go_component: Golgi transport complex [goid GO:0017119] [evidence IPI] [pmid 11703943]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: intra-Golgi transport [goid GO:0006891] [evidence IGI,IPI] [pmid 11703943] --- --- --- --- --- --- S0004996 // COG5 SGDID:S0004996, Chr XIV from 532658-533869, Verified ORF // sgd // 11 // --- /// GENSCAN00000019994 // cdna:Genscan chromosome:SGD1:XIV:532658:533869:1 // ensembl // 11 // --- /// YNL051W // cdna:known chromosome:SGD1:XIV:532658:533869:1 gene:YNL051W // ensembl // 11 // --- --- No cerevisiae_gene -1.15968927647953 -1.00927806075642 1.28915636886203 -1.06451814063051 1.09336130314543 Max fold change below threshold 4 1.28915636886203 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774403_at YLR177W.S1 Hypothetical protein 1.28861470577031 5739.10131835938 5410.00439453125 --- --- 5737 // cytoplasm // inferred from direct assay --- 5863.5712890625 6605.09130859375 4873.111328125 4956.4375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR177W /GEN=RFX1 /DB_XREF=GI:6323206 /SEG=NC_001144:+511056,512942 /DEF=Hypothetical ORF /NOTE=Ylr177wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004167 // YLR177W SGDID:S0004167, Chr XII from 511056-512942, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017957 // cdna:Genscan chromosome:SGD1:XII:511056:512942:1 // ensembl // 11 // --- /// GENEFINDER00000024570 // cdna:GeneFinder chromosome:SGD1:XII:511056:512942:1 // ensembl // 11 // --- /// YLR177W // cdna:known chromosome:SGD1:XII:511056:512942:1 gene:YLR177W // ensembl // 11 // --- --- No cerevisiae_gene -1.10487818970873 1.12646218200066 -1.28861470577031 -1.20325001713404 -1.18302133116023 Max fold change below threshold 4 1.28861470577031 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771006_at YDR375C.S1 Protein of the mitochondrial inner membrane that functions as an ATP-dependent chaperone, required for the assembly of the cytochrome bc(1) complex from the Rip1p and Qcr10p proteins; member of the CDC48/PAS1/SEC18 ATPase family 1.28841970469688 913.075073242188 806.636474609375 BCS1 9060 // aerobic respiration // inferred from mutant phenotype /// 51131 // chaperone-mediated protein complex assembly // inferred from mutant phenotype /// 51131 // chaperone-mediated protein complex assembly // inferred from physical interaction 5743 // mitochondrial inner membrane // inferred from direct assay 16887 // ATPase activity // inferred from sequence similarity 783.114318847656 1008.97991943359 817.170227050781 830.158630371094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR375C /GEN=BCS1 /DB_XREF=GI:6320583 /SEG=NC_001136:-1225154,1226524 /DEF=Mitochondrial protein of the CDC48/PAS1/SEC18 ATPase family, required for expression of functional Rieske iron-sulfur protein /NOTE=Bcs1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 8599931]; go_function: ATPase activity [goid GO:0016887] [evidence ISS] [pmid 1327750]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 1327750] --- --- --- --- --- S0002783 // span:51-73 // numtm:1 S0002783 // BCS1 SGDID:S0002783, Chr IV from 1226526-1225156, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023940 // cdna:GeneFinder chromosome:SGD1:IV:1225156:1226526:-1 // ensembl // 11 // --- /// GENSCAN00000025397 // cdna:Genscan chromosome:SGD1:IV:1225156:1226526:-1 // ensembl // 11 // --- /// YDR375C // cdna:known chromosome:SGD1:IV:1225156:1226526:-1 gene:YDR375C // ensembl // 11 // --- --- No cerevisiae_gene 1.09927996043816 1.28841970469688 1.02617659655143 1.04348778637229 1.06007336399194 Max fold change below threshold 4 1.28841970469688 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771387_at YKR003W.S1 Member of an oxysterol-binding protein family with overlapping, redundant functions in sterol metabolism and which collectively perform a function essential for viability; GFP-fusion protein localizes to the cell periphery 1.28838377895215 598.516754150391 557.532196044922 OSH6 6694 // steroid biosynthesis // inferred from mutant phenotype /// 6694 // steroid biosynthesis // inferred from genetic interaction --- 8142 // oxysterol binding // inferred from sequence similarity 537.867858886719 634.377868652344 562.655639648438 577.196533203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR003W /GEN=OSH6 /DB_XREF=GI:6322855 /SEG=NC_001143:+445024,446370 /DEF=Member of an oxysterol-binding protein family with overlapping, redundant functions in sterol metabolism and which collectively perform a function essential for viability; GFP-fusion protein localizes to the cell periphery /NOTE=Osh6p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: oxysterol binding [goid GO:0008142] [evidence ISS] [pmid 11238399]; go_process: steroid biosynthesis [goid GO:0006694] [evidence IGI,IMP] [pmid 11238399] --- --- --- --- --- --- S0001711 // OSH6 SGDID:S0001711, Chr XI from 445024-446370, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023157 // cdna:GeneFinder chromosome:SGD1:XI:445024:446370:1 // ensembl // 11 // --- /// GENSCAN00000018420 // cdna:Genscan chromosome:SGD1:XI:445600:446370:1 // ensembl // 11 // --- /// YKR003W // cdna:known chromosome:SGD1:XI:445024:446370:1 gene:YKR003W // ensembl // 11 // --- --- No cerevisiae_gene -1.09968226562504 1.17943070620613 1.28838377895215 1.04608526118855 1.07311958442322 Max fold change below threshold 4 1.28838377895215 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773597_at YDR313C.S1 RING-type ubiquitin ligase of the endosomal and vacuolar membranes, binds phosphatidylinositol(3)-phosphate; contains a FYVE finger domain 1.28797063099568 711.006591796875 747.115173339844 PIB1 16567 // protein ubiquitination // inferred from direct assay 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 5770 // late endosome // inferred from direct assay 4842 // ubiquitin-protein ligase activity // inferred from direct assay 737.800659179688 572.839660644531 849.173522949219 756.4296875 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR313C /GEN=PIB1 /DB_XREF=GI:6320519 /SEG=NC_001136:-1089212,1090072 /DEF=Phosphatidylinositol(3)-phosphate binding /NOTE=Pib1p; go_component: late endosome [goid GO:0005770] [evidence IDA] [pmid 11526110]; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 11526110]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence IDA] [pmid 11526110]; go_process: protein ubiquitination [goid GO:0016567] [evidence IDA] [pmid 11526110] --- --- --- --- --- --- S0002721 // PIB1 SGDID:S0002721, Chr IV from 1090074-1089214, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023821 // cdna:GeneFinder chromosome:SGD1:IV:1089214:1090074:-1 // ensembl // 11 // --- /// YDR313C // cdna:known chromosome:SGD1:IV:1089214:1090074:-1 gene:YDR313C // ensembl // 11 // --- --- No cerevisiae_gene -1.19590140920593 -1.28797063099568 1.24719704278397 1.15095251323489 1.0252494059046 Max fold change below threshold 4 1.28797063099568 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779625_at YBR030W.S1 Hypothetical protein 1.28784571506808 482.562973022461 408.879837036133 --- 6644 // phospholipid metabolism // inferred from genetic interaction 5634 // nucleus // inferred from direct assay --- 390.514404296875 462.203643798828 502.922302246094 427.245269775391 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR030W /GEN=CDS1 /DB_XREF=GI:6319504 /SEG=NC_001134:+298254,299912 /DEF=Hypothetical ORF /NOTE=Ybr030wp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: phospholipid metabolism [goid GO:0006644] [evidence IGI] [pmid 8910557] --- --- --- --- --- --- S0000234 // YBR030W SGDID:S0000234, Chr II from 298292-299950, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021163 // cdna:Genscan chromosome:SGD1:II:298292:299950:1 // ensembl // 11 // --- /// GENEFINDER00000022342 // cdna:GeneFinder chromosome:SGD1:II:298292:299950:1 // ensembl // 11 // --- /// YBR030W // cdna:known chromosome:SGD1:II:298292:299950:1 gene:YBR030W // ensembl // 11 // --- --- No cerevisiae_gene -1.08466403357715 1.18357642820123 1.11903073182595 1.28784571506808 1.09405764569594 Max fold change below threshold 4 1.28784571506808 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769946_at YKR042W.S1 Mitochondrial outer membrane and cell wall localized SUN family member required for mitochondrial autophagy; involved in the oxidative stress response, life span during starvation, mitochondrial biogenesis, and cell death 1.2878312664799 5034.71826171875 4002.80090332031 UTH1 1308 // loss of chromatin silencing during replicative cell aging // traceable author statement /// 7005 // mitochondrion organization and biogenesis // traceable author statement 5741 // mitochondrial outer membrane // traceable author statement /// 9277 // cell wall (sensu Fungi) // inferred from direct assay --- 4270.36767578125 5252.53857421875 4816.89794921875 3735.23413085938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR042W /GEN=UTH1 /DB_XREF=GI:6322895 /SEG=NC_001143:+518914,520266 /DEF=Youth, involved in determining yeast longevity /NOTE=Uth1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 11958935]; go_component: mitochondrial outer membrane [goid GO:0005741] [evidence TAS] [pmid 11958935]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence TAS] [pmid 11958935] --- --- --- --- --- --- S0001750 // UTH1 SGDID:S0001750, Chr XI from 518914-520266, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022968 // cdna:GeneFinder chromosome:SGD1:XI:517840:520266:1 // ensembl // 11 // --- /// GENSCAN00000018452 // cdna:Genscan chromosome:SGD1:XI:519586:520266:1 // ensembl // 11 // --- /// YKR042W // cdna:known chromosome:SGD1:XI:518914:520266:1 gene:YKR042W // ensembl // 11 // --- --- No cerevisiae_gene 1.16487254955657 1.22999679957483 -1.2878312664799 1.12798201816136 -1.14326639942079 Max fold change below threshold 4 1.2878312664799 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778638_at YGR046W.S1 Essential protein of unknown function, mRNA is targeted to the bud via the mRNA transport system involving She2p 1.28763861913414 1105.275390625 1215.69812011719 --- 30150 // mitochondrial matrix protein import // inferred from physical interaction 5739 // mitochondrion // inferred from direct assay --- 1182.89404296875 1079.21374511719 1131.33703613281 1248.50219726563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR046W /GEN=RME1 /DB_XREF=GI:6321483 /SEG=NC_001139:+584897,586054 /DEF=Essential protein of unknown function, mRNA is targeted to the bud via the mRNA transport system involving She2p /NOTE=Ygr046wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitochondrial matrix protein import [goid GO:0030150] [evidence IPI] [pmid 14690591] --- --- --- --- --- --- S0003278 // YGR046W SGDID:S0003278, Chr VII from 584899-586056, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019378 // cdna:Genscan chromosome:SGD1:VII:584899:586056:1 // ensembl // 11 // --- /// GENEFINDER00000021480 // cdna:GeneFinder chromosome:SGD1:VII:585133:586056:1 // ensembl // 11 // --- /// YGR046W // cdna:known chromosome:SGD1:VII:584899:586056:1 gene:YGR046W // ensembl // 11 // --- --- No cerevisiae_gene -1.28763861913414 -1.09607021622978 -1.0259013336772 -1.0455717484616 1.05546410068328 Max fold change below threshold 4 1.28763861913414 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776718_at YDL002C.S1 Protein related to mammalian high mobility group proteins; likely component of the INO80 complex, which is an ATP-dependent chromatin-remodeling complex 1.28734752749412 350.616348266602 378.72021484375 NHP10 6338 // chromatin remodeling // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 31011 // INO80 complex // inferred from physical interaction --- 389.936340332031 302.899047851563 398.333648681641 367.504089355469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL002C /GEN=NHP10 /DB_XREF=GI:6320202 /SEG=NC_001136:-446964,447575 /DEF=Non-Histone Protein 10 /NOTE=Nhp10p; go_component: chromatin remodeling complex [goid GO:0016585] [evidence IPI] [pmid 12887900]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin remodeling [goid GO:0006338] [evidence IPI] [pmid 12887900] --- --- --- --- --- --- S0002160 // NHP10 SGDID:S0002160, Chr IV from 447575-446964, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023856 // cdna:GeneFinder chromosome:SGD1:IV:446964:447575:-1 // ensembl // 11 // --- /// GENSCAN00000025097 // cdna:Genscan chromosome:SGD1:IV:446964:447575:-1 // ensembl // 11 // --- /// YDL002C // cdna:known chromosome:SGD1:IV:446964:447575:-1 gene:YDL002C // ensembl // 11 // --- --- No cerevisiae_gene -1.07293817207506 -1.28734752749412 1.19145988153803 1.02153507503932 -1.06103945949528 Max fold change below threshold 4 1.28734752749412 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773333_at YJL076W.S1 Core subunit of the RENT complex, which is a complex involved in nucleolar silencing and telophase exit; stimulates transcription by RNA polymerase I and regulates nucleolar structure 1.28728584149253 839.194213867188 739.733917236328 NET1 183 // chromatin silencing at ribosomal DNA // inferred from physical interaction /// 183 // chromatin silencing at ribosomal DNA // inferred from mutant phenotype /// 7000 // nucleolus organization and biogenesis // inferred from mutant phenotype /// 7096 // regulation of exit from mitosis // inferred from mutant phenotype /// 7096 // regulation of exit from mitosis // inferred from physical interaction 5730 // nucleolus // traceable author statement /// 30869 // RENT complex // inferred from direct assay 182 // ribosomal DNA (rDNA) binding // inferred from direct assay 690.789916992188 819.857299804688 858.531127929688 788.677917480469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL076W /GEN=NET1 /DB_XREF=GI:6322385 /SEG=NC_001142:+295161,298730 /DEF=Nucleolar protein involved in exit from mitosis /NOTE=Net1p; go_component: nucleolus [goid GO:0005730] [evidence TAS] [pmid 10690410]; go_function: ribosomal DNA (rDNA) binding [goid GO:0000182] [evidence IDA] [pmid 10219245]; go_process: chromatin silencing at ribosomal DNA [goid GO:0000183] [evidence IMP,IPI] [pmid 10219245]; go_process: nucleolus organization and biogenesis [goid GO:0007000] [evidence IMP] [pmid 10219245]; go_process: regulation of exit from mitosis [goid GO:0007096] [evidence IMP,IPI] [pmid 10219244] --- --- --- --- --- --- S0003612 // NET1 SGDID:S0003612, Chr X from 295161-298730, Verified ORF // sgd // 11 // --- /// GENSCAN00000024080 // cdna:Genscan chromosome:SGD1:X:295209:298730:1 // ensembl // 11 // --- /// GENEFINDER00000024318 // cdna:GeneFinder chromosome:SGD1:X:295209:298730:1 // ensembl // 11 // --- /// YJL076W // cdna:known chromosome:SGD1:X:295161:298730:1 gene:YJL076W // ensembl // 11 // --- YJL075C // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene 1.28728584149253 1.18684028188263 -1.02263034222361 1.2428252161929 1.14170444310262 Max fold change below threshold 4 1.28728584149253 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771921_at YDR141C.S1 Protein of unknown function, essential for viability, involved in establishing cellular polarity and morphogenesis; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.28670459844827 538.445159912109 596.402313232422 DOP1 902 // cellular morphogenesis // inferred from mutant phenotype /// 902 // cellular morphogenesis // inferred from sequence similarity 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay --- 541.711853027344 490.74365234375 586.146667480469 651.0927734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR141C /GEN=DOP1 /DB_XREF=GI:6320345 /SEG=NC_001136:-734895,739991 /DEF=Protein of unknown function, essential for viability, involved in establishing cellular polarity and morphogenesis; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Dop1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cellular morphogenesis [goid GO:0000902] [evidence IMP,ISS] [pmid 10931277] --- --- --- --- --- --- S0002548 // DOP1 SGDID:S0002548, Chr IV from 739992-734896, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025200 // cdna:Genscan chromosome:SGD1:IV:734896:739992:-1 // ensembl // 11 // --- /// YDR141C // cdna:known chromosome:SGD1:IV:734896:739992:-1 gene:YDR141C // ensembl // 11 // --- --- No cerevisiae_gene -1.2242519043141 -1.10385911349067 1.28670459844827 1.08202666086186 1.20191716278476 Max fold change below threshold 4 1.28670459844827 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778235_at YEL015W.S1 Non-essential conserved protein of unknown function, plays a role in mRNA decapping by specifically affecting the function of the decapping enzyme Dcp1p; localizes to cytoplasmic mRNA processing bodies 1.28638479502247 948.788055419922 855.240051269531 EDC3 31087 // deadenylylation-independent decapping // inferred from mutant phenotype 932 // cytoplasmic mRNA processing body // inferred from direct assay --- 794.11572265625 876.037719726563 1021.53839111328 916.364379882813 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL015W /GEN=EDC3 /DB_XREF=GI:6320822 /SEG=NC_001137:+126629,128284 /DEF=Non-essential conserved protein of unknown function, plays a role in mRNA decapping by specifically affecting the function of the decapping enzyme Dcp1p; localizes to cytoplasmic mRNA processing bodies /NOTE=Edc3p; go_component: cytoplasmic mRNA processing body [goid GO:0000932] [evidence IDA] [pmid 15020463]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: deadenylation-dependent decapping [goid GO:0000290] [evidence IMP,IPI] [pmid 15020463] --- --- --- --- --- --- S0000741 // EDC3 SGDID:S0000741, Chr V from 126629-128284, Verified ORF // sgd // 11 // --- /// GENSCAN00000016792 // cdna:Genscan chromosome:SGD1:V:126629:128284:1 // ensembl // 11 // --- /// GENEFINDER00000019649 // cdna:GeneFinder chromosome:SGD1:V:126629:128660:1 // ensembl // 9 // --- /// YEL015W // cdna:known chromosome:SGD1:V:126629:128284:1 gene:YEL015W // ensembl // 11 // --- --- No cerevisiae_gene 1.17945341067631 1.10316128334078 1.15935440363661 1.28638479502247 1.15394312659829 Max fold change below threshold 4 1.28638479502247 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779716_at YDL097C.S1 Essential, non-ATPase regulatory subunit of the 26S proteasome lid required for the assembly and activity of the 26S proteasome; the human homolog (S9 protein) partially rescues Rpn6p depletion 1.28622728658118 3349.24914550781 3608.97583007813 RPN6 6511 // ubiquitin-dependent protein catabolism // traceable author statement 8541 // proteasome regulatory particle, lid subcomplex (sensu Eukaryota) // inferred from physical interaction 5198 // structural molecule activity // inferred from mutant phenotype 3881.130859375 3246.84521484375 3451.65307617188 3336.82080078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL097C /GEN=RPN6 /DB_XREF=GI:6320106 /SEG=NC_001136:-285391,286695 /DEF=Regulatory Particle Non-ATPase, homolog of mammalian proteasomal subunit S9/p44.5. /NOTE=Rpn6p; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence TAS] [pmid 9697412]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 9697412]; go_function: structural molecule activity [goid GO:0005198] [evidence IMP] [pmid 12486135]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 9697412] --- --- --- --- --- --- S0002255 // RPN6 SGDID:S0002255, Chr IV from 286695-285391, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023708 // cdna:GeneFinder chromosome:SGD1:IV:285391:286695:-1 // ensembl // 11 // --- /// GENSCAN00000025028 // cdna:Genscan chromosome:SGD1:IV:285391:286695:-1 // ensembl // 11 // --- /// YDL097C // cdna:known chromosome:SGD1:IV:285391:286695:-1 gene:YDL097C // ensembl // 11 // --- --- No cerevisiae_gene -1.28622728658118 -1.19535444487204 -1.21356409591677 -1.12442669460844 -1.16312235240991 Max fold change below threshold 4 1.28622728658118 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771515_at YML131W.S1 Hypothetical protein 1.28614693701506 3481.83044433594 2833.41845703125 --- --- 5737 // cytoplasm // inferred from direct assay --- 2937.77221679688 3778.40673828125 3185.25415039063 2729.06469726563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML131W /GEN=COS3 /DB_XREF=GI:6323504 /SEG=NC_001145:+10199,11296 /DEF=Hypothetical ORF /NOTE=Yml131wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004600 // span:134-153,168-190 // numtm:2 S0004600 // YML131W SGDID:S0004600, Chr XIII from 10199-11296, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018605 // cdna:Genscan chromosome:SGD1:XIII:10199:11296:1 // ensembl // 11 // --- /// GENEFINDER00000022083 // cdna:GeneFinder chromosome:SGD1:XIII:10199:11296:1 // ensembl // 11 // --- /// YML131W // cdna:known chromosome:SGD1:XIII:10199:11296:1 gene:YML131W // ensembl // 11 // --- --- No cerevisiae_gene -1.16192052145622 1.28614693701506 1.09394159367712 1.08424136227402 -1.0764758416099 Max fold change below threshold 4 1.28614693701506 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773693_at YBR199W.S1 Putative mannosyltransferase involved in protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family 1.28609320455221 1980.92462158203 2453.29516601563 KTR4 6487 // N-linked glycosylation // inferred from sequence similarity 5794 // Golgi apparatus // inferred from sequence similarity 30 // mannosyltransferase activity // inferred from sequence similarity 2507.23022460938 2012.35583496094 1949.49340820313 2399.36010742188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR199W /GEN=KTR4 /DB_XREF=GI:6319676 /SEG=NC_001134:+618866,620260 /DEF=Putative alpha-1,2-mannosyltransferase /NOTE=Ktr4p; go_component: Golgi apparatus [goid GO:0005794] [evidence ISS] [pmid 9878809]; go_function: mannosyltransferase activity [goid GO:0000030] [evidence ISS] [pmid 9878809]; go_process: N-linked glycosylation [goid GO:0006487] [evidence ISS] [pmid 9878809] --- --- --- --- --- S0000403 // span:12-31 // numtm:1 S0000403 // KTR4 SGDID:S0000403, Chr II from 618904-620298, Verified ORF // sgd // 11 // --- /// GENSCAN00000021299 // cdna:Genscan chromosome:SGD1:II:618904:620298:1 // ensembl // 11 // --- /// GENEFINDER00000022226 // cdna:GeneFinder chromosome:SGD1:II:618904:620298:1 // ensembl // 11 // --- /// YBR199W // cdna:known chromosome:SGD1:II:618904:620298:1 gene:YBR199W // ensembl // 11 // --- --- No cerevisiae_gene 1.0072654135525 -1.24591793412026 -1.01757830865803 -1.28609320455221 -1.04495786891423 Max fold change below threshold 4 1.28609320455221 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774394_at YOR081C.S1 Protein of unknown function, localizes to lipid particles; potential Cdc28p substrate 1.28578884418224 531.247192382813 581.182556152344 --- --- 5811 // lipid particle // inferred from direct assay --- 560.871704101563 526.247192382813 536.247192382813 601.493408203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR081C /GEN=DIA2 /DB_XREF=GI:6324655 /SEG=NC_001147:-476940,479189 /DEF=Protein of unknown function, localizes to lipid particles; potential Cdc28p substrate /NOTE=Yor081cp --- --- --- --- --- S0005607 // span:181-203 // numtm:1 S0005607 // STC2 SGDID:S0005607, Chr XV from 479189-476940, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000017522 // cdna:Genscan chromosome:SGD1:XV:476940:479189:-1 // ensembl // 10 // --- /// GENEFINDER00000022632 // cdna:GeneFinder chromosome:SGD1:XV:476940:479189:-1 // ensembl // 10 // --- /// YOR081C // cdna:known chromosome:SGD1:XV:476940:479189:-1 gene:YOR081C // ensembl // 10 // --- --- No cerevisiae_gene -1.20679672360064 -1.0657951476415 -1.28578884418224 -1.04592007579439 1.07242601793691 Max fold change below threshold 4 1.28578884418224 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774086_at YPR094W.S1 Zinc cluster protein involved in pre-mRNA splicing and cycloheximide resistance 1.28555370431097 406.487686157227 449.886291503906 RDS3 398 // nuclear mRNA splicing, via spliceosome // inferred from mutant phenotype /// 398 // nuclear mRNA splicing, via spliceosome // inferred from genetic interaction /// 9410 // response to xenobiotic stimulus // inferred from mutant phenotype 5681 // spliceosome complex // traceable author statement 3700 // transcription factor activity // inferred from sequence similarity /// 3700 // transcription factor activity // inferred from mutant phenotype 414.595184326172 459.410369873047 353.565002441406 485.177398681641 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR094W /GEN=RDS3 /DB_XREF=GI:6325351 /SEG=NC_001148:+720633,720956 /DEF=Well-conserved 12-kDa protein with five CxxC zinc fingers that has been implicated in the activation of certain drug transport genes and in the pre-mRNA splicing pathway /NOTE=Rds3p; go_component: spliceosome complex [goid GO:0005681] [evidence TAS] [pmid 14517302]; go_function: transcription factor activity [goid GO:0003700] [evidence IMP,ISS] [pmid 11943786]; go_process: response to xenobiotic stimulus [goid GO:0009410] [evidence IMP] [pmid 11943786] --- --- --- --- --- --- S0006298 // RDS3 SGDID:S0006298, Chr XVI from 720635-720958, Verified ORF // sgd // 10 // --- /// YPR094W // cdna:known chromosome:SGD1:XVI:720635:720958:1 gene:YPR094W // ensembl // 10 // --- --- No cerevisiae_gene 1.28555370431097 1.10809384006645 1.19759765131164 -1.17261375267163 1.17024369077075 Max fold change below threshold 4 1.28555370431097 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778499_at YGR004W.S1 Peroxisomal integral membrane protein, involved in negative regulation of peroxisome size; partially functionally redundant with Pex30p and Pex32p; probably acts at a step downstream of steps mediated by Pex28p and Pex29p 1.28545856687548 168.933036804199 212.246788024902 PEX31 7031 // peroxisome organization and biogenesis // inferred from mutant phenotype 5779 // integral to peroxisomal membrane // inferred from direct assay --- 199.889434814453 155.50048828125 182.365585327148 224.604141235352 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR004W /GEN=PEX31 /DB_XREF=GI:6321441 /SEG=NC_001139:+502940,504328 /DEF=Peroxisomal integral membrane protein, involved in negative regulation of peroxisome size; partially functionally redundant with Pex30p and Pex32p; probably acts at a step downstream of steps mediated by Pex28p and Pex29p /NOTE=Pex31p; go_component: integral to peroxisomal membrane [goid GO:0005779] [evidence IDA] [pmid 14617799]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence IMP] [pmid 14617799] --- --- --- --- scop // a.4.5.Forkhead DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Forkhead DNA-binding domain // 3.40000009536743 S0003236 // span:67-86,96-129,176-195,199-216 // numtm:4 S0003236 // PEX31 SGDID:S0003236, Chr VII from 502942-504330, Verified ORF // sgd // 11 // --- /// GENSCAN00000019343 // cdna:Genscan chromosome:SGD1:VII:503353:504330:1 // ensembl // 11 // --- /// YGR004W // cdna:known chromosome:SGD1:VII:502942:504330:1 gene:YGR004W // ensembl // 11 // --- --- No cerevisiae_gene 1.27277920212544 -1.28545856687548 -1.03388396924129 -1.09609186654307 1.12364188454402 Max fold change below threshold 4 1.28545856687548 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770607_at YLR336C.S1 Essential nuclear protein with a possible role in the osmoregulatory glycerol response; interacts with phospholipase C (Plc1p); putative homolog of human NOM1 which is implicated in acute myeloid leukemia 1.28535575380109 199.393859863281 281.929664611816 SGD1 18987 // osmoregulation // inferred from genetic interaction /// 18987 // osmoregulation // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5634 // nucleus // inferred from sequence similarity /// 5730 // nucleolus // inferred from direct assay --- 246.727157592773 192.78254699707 206.005172729492 317.132171630859 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR336C /GEN=SGD1 /DB_XREF=GI:6323368 /SEG=NC_001144:-799697,802396 /DEF=Suppressor of Glycerol Defect /NOTE=Sgd1p; go_component: nucleus [goid GO:0005634] [evidence IDA,ISS] [pmid 11042259]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: osmoregulation [goid GO:0018987] [evidence IGI,IMP] [pmid 12073033] --- --- --- --- --- --- S0004328 // SGD1 SGDID:S0004328, Chr XII from 802396-799697, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018076 // cdna:Genscan chromosome:SGD1:XII:799697:802396:-1 // ensembl // 11 // --- /// GENEFINDER00000024701 // cdna:GeneFinder chromosome:SGD1:XII:799697:802396:-1 // ensembl // 9 // --- /// YLR336C // cdna:known chromosome:SGD1:XII:799697:802396:-1 gene:YLR336C // ensembl // 11 // --- --- No cerevisiae_gene 1.20109890769115 -1.27982102859406 1.28283941301626 -1.19767457449602 1.28535575380109 Max fold change below threshold 4 1.28535575380109 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778077_at YJR015W.S1 Hypothetical protein 1.28506559664794 561.410751342773 659.144592285156 --- --- 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay --- 615.294372558594 478.803863525391 644.017639160156 702.994812011719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR015W /GEN=SPC1 /DB_XREF=GI:6322475 /SEG=NC_001142:+462635,464167 /DEF=Hypothetical ORF /NOTE=Yjr015wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003776 // span:90-112,306-328,350-372,379-401,416-438,473-492 // numtm:6 S0003776 // YJR015W SGDID:S0003776, Chr X from 462635-464167, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024146 // cdna:Genscan chromosome:SGD1:X:462635:464167:1 // ensembl // 11 // --- /// GENEFINDER00000024462 // cdna:GeneFinder chromosome:SGD1:X:462635:464167:1 // ensembl // 11 // --- /// YJR015W // cdna:known chromosome:SGD1:X:462635:464167:1 gene:YJR015W // ensembl // 11 // --- --- No cerevisiae_gene -1.01958937816878 -1.28506559664794 1.01642935019333 1.04668215391297 1.14253411596865 Max fold change below threshold 4 1.28506559664794 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779932_at YLR201C.S1 The authentic, non-tagged protein was localized to the mitochondria 1.28460777729467 1905.03338623047 2405.7529296875 --- --- 5739 // mitochondrion // inferred from direct assay --- 2444.90356445313 1903.22961425781 1906.83715820313 2366.60229492188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR201C /GEN=YKE2 /DB_XREF=GI:6323230 /SEG=NC_001144:-549513,550295 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ylr201cp --- --- --- --- --- --- S0004191 // FMP53 SGDID:S0004191, Chr XII from 550295-549513, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017976 // cdna:Genscan chromosome:SGD1:XII:549513:550295:-1 // ensembl // 11 // --- /// YLR201C // cdna:known chromosome:SGD1:XII:549513:550295:-1 gene:YLR201C // ensembl // 11 // --- --- No cerevisiae_gene 1.00891882378493 -1.28460777729467 1.05923035252002 -1.28217742869928 -1.03308594337936 Max fold change below threshold 4 1.28460777729467 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774173_at YNL330C.S1 Histone deacetylase; regulates transcription and silencing 1.28456293376869 1392.5810546875 1352.74700927734 RPD3 183 // chromatin silencing at ribosomal DNA // inferred from mutant phenotype /// 1308 // loss of chromatin silencing during replicative cell aging // inferred from mutant phenotype /// 6303 // double-strand break repair via nonhomologous end-joining // inferred from mutant phenotype /// 6312 // mitotic recombination // inferred from mutant phenotype /// 6325 // establishment and/or maintenance of chromatin architecture // traceable author statement /// 6342 // chromatin silencing // inferred from direct assay /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 6355 // regulation of transcription, DNA-dependent // traceable author statement /// 6476 // protein amino acid deacetylation // inferred from direct assay /// 30466 // chromatin silencing at silent mating-type cassette // inferred from mutant phenotype 118 // histone deacetylase complex // inferred from direct assay 4407 // histone deacetylase activity // inferred from mutant phenotype /// 4407 // histone deacetylase activity // traceable author statement /// 4407 // histone deacetylase activity // inferred from direct assay 1304.07336425781 1237.98999023438 1547.17211914063 1401.42065429688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL330C /GEN=RPD3 /DB_XREF=GI:6323999 /SEG=NC_001146:-18001,19302 /DEF=Histone deacetylase; regulates transcription and silencing /NOTE=Rpd3p; go_component: histone deacetylase complex [goid GO:0000118] [evidence IDA] [pmid 8962081]; go_function: histone deacetylase activity [goid GO:0004407] [evidence IDA,IMP] [pmid 10384304]; go_function: histone deacetylase activity [goid GO:0004407] [evidence TAS] [pmid 11095743]; go_process: chromatin silencing [goid GO:0006342] [evidence IDA] [pmid 10388812]; go_process: chromatin silencing at ribosomal DNA [goid GO:0000183] [evidence IMP] [pmid 10388812]; go_process: chromatin silencing at silent mating-type cassette (sensu Fungi) [goid GO:0030466] [evidence IMP] [pmid 10388812]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 10388812]; go_process: establishment and/or maintenance of chromatin architecture [goid GO:0006325] [evidence TAS] [pmid 10384311]; go_process: loss of chromatin silencing during replicative cell aging [goid GO:0001308] [evidence IMP] [pmid 10512855]; go_process: mitotic recombination [goid GO:0006312] [evidence IMP] [pmid 10079324]; go_process: protein amino acid deacetylation [goid GO:0006476] [evidence IDA] [pmid 10384304]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence TAS] [pmid 10384311] --- --- --- --- --- --- S0005274 // RPD3 SGDID:S0005274, Chr XIV from 19302-18001, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019780 // cdna:Genscan chromosome:SGD1:XIV:18001:19302:-1 // ensembl // 11 // --- /// GENEFINDER00000020709 // cdna:GeneFinder chromosome:SGD1:XIV:18001:19302:-1 // ensembl // 11 // --- /// YNL330C // cdna:known chromosome:SGD1:XIV:18001:19302:-1 gene:YNL330C // ensembl // 11 // --- --- No cerevisiae_gene -1.16030112089997 -1.05337957054962 1.28456293376869 1.18641493764514 1.07464862998292 Max fold change below threshold 4 1.28456293376869 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771199_at YGL122C.S1 Nuclear polyadenylated RNA-binding protein; autoregulates mRNA levels; related to human hnRNPs; has nuclear localization signal sequence that binds to Kap104p; required for poly(A) tail length control and nuclear mRNA export 1.28428205103933 3986.91137695313 3241.20983886719 NAB2 6378 // mRNA polyadenylylation // inferred from direct assay /// 16973 // poly(A)+ mRNA-nucleus export // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5634 // nucleus // traceable author statement /// 5737 // cytoplasm // traceable author statement 8143 // poly(A) binding // traceable author statement 3378.66528320313 4339.1591796875 3634.66357421875 3103.75439453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL122C /GEN=NAB2 /DB_XREF=GI:6321316 /SEG=NC_001139:-278950,280527 /DEF=nuclear polyadenylated RNA binding protein /NOTE=Nab2p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 11779864]; go_component: nucleus [goid GO:0005634] [evidence IDA,TAS] [pmid 11779864]; go_function: poly(A) binding [goid GO:0008143] [evidence TAS] [pmid 11779864]; go_process: mRNA polyadenylation [goid GO:0006378] [evidence IDA] [pmid 11927564]; go_process: poly(A)+ mRNA-nucleus export [goid GO:0016973] [evidence IMP] [pmid 11779864] --- --- --- --- --- --- S0003090 // NAB2 SGDID:S0003090, Chr VII from 280529-278952, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019259 // cdna:Genscan chromosome:SGD1:VII:278952:280019:-1 // ensembl // 11 // --- /// GENEFINDER00000021625 // cdna:GeneFinder chromosome:SGD1:VII:278952:280529:-1 // ensembl // 11 // --- /// YGL122C // cdna:known chromosome:SGD1:VII:278952:280529:-1 gene:YGL122C // ensembl // 11 // --- --- No cerevisiae_gene -1.08869397988746 1.28428205103933 -1.20167143230521 1.07576905954204 -1.08857366071113 Max fold change below threshold 4 1.28428205103933 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777341_at YBL038W.S1 Mitochondrial ribosomal protein of the large subunit 1.28400027727464 2334.03540039063 1917.5654296875 MRPL16 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement 48 // peptidyltransferase activity // inferred from sequence similarity /// 3735 // structural constituent of ribosome // traceable author statement 1975.84448242188 2536.98486328125 2131.0859375 1859.28637695313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL038W /GEN=MRPL16 /DB_XREF=GI:6319433 /SEG=NC_001134:+146152,146850 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl16p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: peptidyltransferase activity [goid GO:0000048] [evidence ISS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0000134 // MRPL16 SGDID:S0000134, Chr II from 146190-146888, Verified ORF // sgd // 11 // --- /// GENSCAN00000021107 // cdna:Genscan chromosome:SGD1:II:146229:146888:1 // ensembl // 11 // --- /// YBL038W // cdna:known chromosome:SGD1:II:146190:146888:1 gene:YBL038W // ensembl // 11 // --- --- No cerevisiae_gene -1.0077559786434 1.28400027727464 -1.04089197863081 1.07856967309889 -1.06268970015246 Max fold change below threshold 4 1.28400027727464 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779027_at YMR152W.S1 Mitochondrial inner membrane protease, similar to E. coli leader peptidase 1.28371243661097 3424.82739257813 3740.75122070313 YIM1 6974 // response to DNA damage stimulus // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5811 // lipid particle // inferred from direct assay --- 4063.18334960938 3684.47290039063 3165.18188476563 3418.31909179688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR152W /GEN=YIM1 /DB_XREF=GI:6323801 /SEG=NC_001145:+563095,564192 /DEF=Mitochondrial inner membrane protease, similar to E. coli leader peptidase /NOTE=Yim1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 10515935]; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA,ISS] [pmid 1886606]; go_function: peptidase activity [goid GO:0008233] [evidence IMP,ISS] [pmid 1886606]; go_process: mitochondrial processing [goid GO:0006627] [evidence IMP] [pmid 1886606] --- --- --- --- --- --- S0004760 // YIM1 SGDID:S0004760, Chr XIII from 563095-564192, Verified ORF // sgd // 11 // --- /// GENSCAN00000018840 // cdna:Genscan chromosome:SGD1:XIII:563095:564192:1 // ensembl // 11 // --- /// GENEFINDER00000021812 // cdna:GeneFinder chromosome:SGD1:XIII:563095:564192:1 // ensembl // 11 // --- /// YMR152W // cdna:known chromosome:SGD1:XIII:563095:564192:1 gene:YMR152W // ensembl // 11 // --- --- No cerevisiae_gene -1.20164648423003 -1.10278551626166 -1.12633247288966 -1.28371243661097 -1.188649520567 Max fold change below threshold 4 1.28371243661097 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778612_at YCR069W.S1 Peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; has a potential role in the secretory pathway 1.2836331772897 1968.01538085938 2326.35607910156 CPR4 --- 16020 // membrane // inferred from sequence similarity 3755 // peptidyl-prolyl cis-trans isomerase activity // inferred from sequence similarity 2389.443359375 1861.46899414063 2074.56176757813 2263.26879882813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR069W /GEN=CPR4 /DB_XREF=GI:6319914 /SEG=NC_001135:+239050,240006 /DEF=Peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; has a potential role in the secretory pathway /NOTE=Cpr4p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 1803821]; go_function: peptidyl-prolyl cis-trans isomerase activity [goid GO:0003755] [evidence ISS] [pmid 1803821]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000665 // CPR4 SGDID:S0000665, Chr III from 239050-240006, Verified ORF // sgd // 11 // --- /// GENSCAN00000022507 // cdna:Genscan chromosome:SGD1:III:239050:240006:1 // ensembl // 11 // --- /// GENEFINDER00000023354 // cdna:GeneFinder chromosome:SGD1:III:239050:240006:1 // ensembl // 11 // --- /// YCR069W // cdna:known chromosome:SGD1:III:239050:240006:1 gene:YCR069W // ensembl // 11 // --- --- No cerevisiae_gene -1.19193383200828 -1.2836331772897 -1.08321613532908 -1.15178222057205 -1.05574881808657 Max fold change below threshold 4 1.2836331772897 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770034_at YBR268W.S1 Mitochondrial ribosomal protein of the large subunit 1.28302940205052 636.542083740234 621.454132080078 MRPL37 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 617.775939941406 589.342346191406 683.741821289063 625.13232421875 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR268W /GEN=MRPL37 /DB_XREF=GI:6319745 /SEG=NC_001134:+741256,741573 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl37p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0000472 // MRPL37 SGDID:S0000472, Chr II from 741294-741611, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022313 // cdna:GeneFinder chromosome:SGD1:II:741294:741611:1 // ensembl // 11 // --- /// YBR268W // cdna:known chromosome:SGD1:II:741294:741611:1 gene:YBR268W // ensembl // 11 // --- --- No cerevisiae_gene -1.1243401959545 -1.04824631037249 1.28302940205052 1.10677962200003 1.01190785170112 Max fold change below threshold 4 1.28302940205052 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779703_at YFR010W.S1 Ubiquitin-specific protease situated in the base subcomplex of the 26S proteasome, releases free ubiquitin from branched polyubiquitin chains; deletion causes hypersensitivity to cycloheximide and other toxic compounds 1.28227763186133 2217.65869140625 1789.14117431641 UBP6 16579 // protein deubiquitination // traceable author statement 5838 // proteasome regulatory particle (sensu Eukaryota) // inferred from physical interaction 4843 // ubiquitin-specific protease activity // traceable author statement 1780.93249511719 2283.64990234375 2151.66748046875 1797.34985351563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR010W /GEN=UBP6 /DB_XREF=GI:14318532 /SEG=NC_001138:+165060,166559 /DEF=Ubiquitin-specific protease situated in the base subcomplex of the 26S proteasome, releases free ubiquitin from branched polyubiquitin chains; deletion causes hypersensitivity to cycloheximide and other toxic compounds /NOTE=Ubp6p; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence IPI] [pmid 11029046]; go_function: ubiquitin-specific protease activity [goid GO:0004843] [evidence TAS] [pmid 8982460]; go_process: protein deubiquitination [goid GO:0016579] [evidence TAS] [pmid 8982460] --- --- --- --- --- --- S0001906 // UBP6 SGDID:S0001906, Chr VI from 165060-166559, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018595 // cdna:GeneFinder chromosome:SGD1:VI:165060:166559:1 // ensembl // 11 // --- /// GENSCAN00000023252 // cdna:Genscan chromosome:SGD1:VI:165060:166559:1 // ensembl // 11 // --- /// YFR010W // cdna:known chromosome:SGD1:VI:165060:166559:1 gene:YFR010W // ensembl // 11 // --- --- No cerevisiae_gene -1.03292095032642 1.28227763186133 -1.01956050449848 1.20816902738763 1.00921840577532 Max fold change below threshold 4 1.28227763186133 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769335_at YKL138C.S1 Mitochondrial ribosomal protein of the large subunit 1.28224107720163 1016.65399169922 1104.82836914063 MRPL31 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement /// 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // traceable author statement 1054.59887695313 993.770751953125 1039.53723144531 1155.05786132813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL138C /GEN=MRPL31 /DB_XREF=GI:6322711 /SEG=NC_001143:-185291,185686 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl31p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0001621 // MRPL31 SGDID:S0001621, Chr XI from 185686-185291, reverse complement, Verified ORF // sgd // 10 // --- /// YKL138C // cdna:known chromosome:SGD1:XI:185291:185686:-1 gene:YKL138C // ensembl // 10 // --- --- No cerevisiae_gene 1.28224107720163 -1.06120941362024 1.23173637044039 -1.01448879852708 1.09525800431842 Max fold change below threshold 4 1.28224107720163 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769907_at YGL252C.S1 Sensor of mitochondrial dysfunction; regulates the subcellular location of Rtg1p and Rtg3p, transcriptional activators of the retrograde (RTG) and TOR pathways; Rtg2p is inhibited by the phosphorylated form of Mks1p 1.28189083882591 817.33349609375 858.488616943359 RTG2 1310 // extrachromosomal rDNA circle accumulation during replicative cell aging // inferred from mutant phenotype /// 7242 // intracellular signaling cascade // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5737 // cytoplasm // traceable author statement /// 46695 // SLIK (SAGA-like) complex // inferred from physical interaction 30528 // transcription regulator activity // inferred from direct assay /// 30528 // transcription regulator activity // traceable author statement 803.067749023438 735.345825195313 899.321166992188 913.909484863281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL252C /GEN=RTG2 /DB_XREF=GI:6321185 /SEG=NC_001139:-25718,27484 /DEF=Protein involved in interorganelle communication between mitochondria, peroxisomes, and nucleus. Likely role of Rtg2p is to antagonize Mks1p, a negative regulator of RTG target gene activation. /NOTE=Rtg2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10848632]; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 11076970]; go_function: transcription regulator activity [goid GO:0030528] [evidence TAS] [pmid 11076970]; go_function: transcription regulator activity [goid GO:0030528] [evidence IDA] [pmid 11882290]; go_process: intracellular signaling cascade [goid GO:0007242] [evidence IMP] [pmid 10848632] --- --- --- --- --- --- S0003221 // RTG2 SGDID:S0003221, Chr VII from 27484-25718, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019162 // cdna:Genscan chromosome:SGD1:VII:25718:27238:-1 // ensembl // 11 // --- /// GENEFINDER00000021401 // cdna:GeneFinder chromosome:SGD1:VII:25718:27484:-1 // ensembl // 11 // --- /// YGL252C // cdna:known chromosome:SGD1:VII:25718:27484:-1 gene:YGL252C // ensembl // 11 // --- --- No cerevisiae_gene -1.20836141677766 -1.09209534005328 1.28189083882591 1.11985715786221 1.13802289529698 Max fold change below threshold 4 1.28189083882591 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776160_at YKR072C.S1 Negative regulatory subunit of the protein phosphatase 1 Ppz1p; involved in ion homeostasis and cell cycle progression 1.27996745526283 1767.16003417969 1895.10791015625 SIS2 82 // G1/S transition of mitotic cell cycle // inferred from genetic interaction /// 7346 // regulation of mitotic cell cycle // inferred from genetic interaction /// 9651 // response to salt stress // inferred from genetic interaction /// 9651 // response to salt stress // inferred from mutant phenotype /// 15937 // coenzyme A biosynthesis // inferred from sequence similarity 5634 // nucleus // inferred from direct assay /// 5634 // nucleus // inferred from physical interaction /// 5737 // cytoplasm // inferred from curator /// 5737 // cytoplasm // inferred from physical interaction 4633 // phosphopantothenoylcysteine decarboxylase activity // inferred from sequence similarity /// 4864 // protein phosphatase inhibitor activity // inferred from direct assay 1803.40698242188 1527.20959472656 2007.11047363281 1986.80883789063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR072C /GEN=SIS2 /DB_XREF=GI:6322925 /SEG=NC_001143:-576077,577765 /DEF=Involved in cell cycle control and ion homeostasis /NOTE=Sis2p; go_component: cytoplasm [goid GO:0005737] [evidence IC,IPI] [pmid 9636153]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 7705654]; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 9636153]; go_function: phosphopantothenoylcysteine decarboxylase activity [goid GO:0004633] [evidence ISS] [pmid 10592175]; go_function: protein phosphatase inhibitor activity [goid GO:0004864] [evidence IDA] [pmid 9636153]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IGI] [pmid 12518319]; go_process: coenzyme A biosynthesis [goid GO:0015937] [evidence ISS] [pmid 10592175]; go_process: regulation of mitotic cell cycle [goid GO:0007346] [evidence IGI] [pmid 10022927]; go_process: response to salt stress [goid GO:0009651] [evidence IGI,IMP] [pmid 9636153] --- --- --- --- --- --- S0001780 // SIS2 SGDID:S0001780, Chr XI from 577765-576077, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022970 // cdna:GeneFinder chromosome:SGD1:XI:576077:577765:-1 // ensembl // 11 // --- /// YKR072C // cdna:known chromosome:SGD1:XI:576077:577765:-1 gene:YKR072C // ensembl // 11 // --- --- No cerevisiae_gene 1.27996745526283 -1.18085100345691 1.24450398043525 1.11295480897904 1.10169743006232 Max fold change below threshold 4 1.27996745526283 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771773_at YNR037C.S1 Mitochondrial ribosomal protein of the small subunit, has similarity to E. coli S19 ribosomal protein 1.2789563740732 909.530395507813 721.378723144531 RSM19 6412 // protein biosynthesis // inferred from direct assay 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // inferred from direct assay 727.753051757813 888.29638671875 930.764404296875 715.00439453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR037C /GEN=RSM19 /DB_XREF=GI:6324365 /SEG=NC_001146:-695051,695326 /DEF=Mitochondrial ribosomal protein of the small subunit, has similarity to E. coli S19 ribosomal protein /NOTE=Rsm19p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 11278769]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 11278769]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 11278769] --- --- --- --- --- --- S0005320 // RSM19 SGDID:S0005320, Chr XIV from 695327-695052, reverse complement, Verified ORF // sgd // 11 // --- /// YNR037C // cdna:known chromosome:SGD1:XIV:695052:695327:-1 gene:YNR037C // ensembl // 11 // --- --- No cerevisiae_gene -1.03043780470321 1.22060139022868 1.18456559672969 1.2789563740732 -1.01783018023955 Max fold change below threshold 4 1.2789563740732 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771475_at YDR390C.S1 Nuclear protein that acts as a heterodimer with Aos1p to activate Smt3p (SUMO) before its conjugation to proteins (sumoylation), which may play a role in protein targeting; essential for viability 1.27866059938935 621.915802001953 773.753356933594 UBA2 16925 // protein sumoylation // inferred from mutant phenotype /// 16925 // protein sumoylation // inferred from direct assay 5634 // nucleus // inferred from direct assay 19948 // SUMO activating enzyme activity // inferred from direct assay /// 19948 // SUMO activating enzyme activity // inferred from mutant phenotype /// 19948 // SUMO activating enzyme activity // inferred from physical interaction 728.919189453125 583.963623046875 659.867980957031 818.587524414063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR390C /GEN=UBA2 /DB_XREF=GI:6320598 /SEG=NC_001136:-1254925,1256835 /DEF=Nuclear protein that acts as a heterodimer with Aos1p to activate Smt3p (SUMO) before its conjugation to proteins (sumoylation), which may play a role in protein targeting; essential for viability /NOTE=Uba2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 7629121]; go_function: SUMO activating enzyme activity [goid GO:0019948] [evidence IDA,IMP,IPI] [pmid 9312010]; go_process: protein sumoylation [goid GO:0016925] [evidence IDA,IMP] [pmid 9312010] --- --- --- --- --- --- S0002798 // UBA2 SGDID:S0002798, Chr IV from 1256837-1254927, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023945 // cdna:GeneFinder chromosome:SGD1:IV:1254927:1256837:-1 // ensembl // 11 // --- /// GENSCAN00000025409 // cdna:Genscan chromosome:SGD1:IV:1254927:1256837:-1 // ensembl // 11 // --- /// YDR390C // cdna:known chromosome:SGD1:IV:1254927:1256837:-1 gene:YDR390C // ensembl // 11 // --- --- No cerevisiae_gene 1.16964873345965 -1.24822704820196 -1.27866059938935 -1.10464397499019 1.12301546763807 Max fold change below threshold 4 1.27866059938935 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778151_at YNL191W.S1 Hypothetical protein 1.27760532283044 654.906707763672 848.258697509766 --- --- 5737 // cytoplasm // inferred from direct assay --- 836.61376953125 654.983825683594 654.82958984375 859.903625488281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL191W /GEN=CHS1 /DB_XREF=GI:6324138 /SEG=NC_001146:+280431,281504 /DEF=Hypothetical ORF /NOTE=Ynl191wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005135 // YNL191W SGDID:S0005135, Chr XIV from 280431-281504, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020458 // cdna:GeneFinder chromosome:SGD1:XIV:280431:281504:1 // ensembl // 11 // --- /// GENSCAN00000019887 // cdna:Genscan chromosome:SGD1:XIV:280557:281504:1 // ensembl // 11 // --- /// YNL191W // cdna:known chromosome:SGD1:XIV:280431:281504:1 gene:YNL191W // ensembl // 11 // --- --- No cerevisiae_gene -1.27383300032526 -1.27730447184416 -1.23311405136371 -1.27760532283044 1.02783824125926 Max fold change below threshold 4 1.27760532283044 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771636_at YNL212W.S1 Cytoplasmic protein possibly involved in vacuolar protein degradation; not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase); null mutants exhibit normal growth 1.27749374351941 1108.38787841797 1351.79010009766 VID27 --- 5737 // cytoplasm // inferred from direct assay --- 1349.94909667969 1160.05895996094 1056.716796875 1353.63110351563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL212W /GEN=VID27 /DB_XREF=GI:6324117 /SEG=NC_001146:+247460,249808 /DEF=Vacuole import and degradation /NOTE=Vid27p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005156 // VID27 SGDID:S0005156, Chr XIV from 247460-249808, Verified ORF // sgd // 11 // --- /// GENSCAN00000019872 // cdna:Genscan chromosome:SGD1:XIV:247460:249808:1 // ensembl // 11 // --- /// GENEFINDER00000020429 // cdna:GeneFinder chromosome:SGD1:XIV:247460:249808:1 // ensembl // 11 // --- /// YNL212W // cdna:known chromosome:SGD1:XIV:247460:249808:1 gene:YNL212W // ensembl // 11 // --- --- No cerevisiae_gene -1.22171900861506 -1.16369007375724 1.0481446285726 -1.27749374351941 1.0027275153152 Max fold change below threshold 4 1.27749374351941 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775193_at YFL036W.S1 Mitochondrial RNA polymerase; single subunit enzyme similar to those of T3 and T7 bacteriophages; requires a specificity subunit encoded by MTF1 for promoter recognition 1.27691688782119 1037.72537231445 975.712860107422 RPO41 2 // mitochondrial genome maintenance // inferred from mutant phenotype /// 6390 // transcription from mitochondrial promoter // inferred from mutant phenotype 5759 // mitochondrial matrix // inferred from direct assay /// 42645 // mitochondrial nucleoid // inferred from direct assay 3899 // DNA-directed RNA polymerase activity // inferred from direct assay 920.227722167969 933.104309082031 1142.34643554688 1031.19799804688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL036W /GEN=RPO41 /DB_XREF=GI:14318482 /SEG=NC_001138:+58781,62836 /DEF=mitochondrial RNA polymerase /NOTE=Rpo41p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 2426263]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence IDA] [pmid 2426263]; go_process: mitochondrial genome maintenance [goid GO:0000002] [evidence IMP] [pmid 3517858]; go_process: transcription from mitochondrial promoter [goid GO:0006390] [evidence IMP] [pmid 3517858] --- --- --- --- --- --- S0001858 // RPO41 SGDID:S0001858, Chr VI from 58781-62836, Verified ORF // sgd // 11 // --- /// GENSCAN00000023211 // cdna:Genscan chromosome:SGD1:VI:58781:62836:1 // ensembl // 11 // --- /// GENEFINDER00000018517 // cdna:GeneFinder chromosome:SGD1:VI:59093:62836:1 // ensembl // 11 // --- /// YFL036W // cdna:known chromosome:SGD1:VI:58781:62836:1 gene:YFL036W // ensembl // 11 // --- --- No cerevisiae_gene -1.27691688782119 1.01399282656224 1.27491662637906 1.24137363831598 1.12059001615108 Max fold change below threshold 4 1.27691688782119 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772849_at SPBC215.09c.S1 --- 1.27687477677147 --- --- --- --- 12.7952041625977 16.3378734588623 12.8177223205566 10.7044153213501 0.149657994508743 0.129638999700546 0.219482004642487 0.149657994508743 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC215.09c /DEF=acetyl-CoA C-acetyltransferase activity (predicted) --- --- --- --- --- --- D89184 // Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1028. // gb // 11 // --- /// SPBC215.09c // |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No -1.00712893042623 1.27687477677147 1.20415817727461 1.00175989047715 -1.19532022800698 Max fold change below threshold 4 1.27687477677147 Max fold change below threshold APAPAA No 4 0 AAAA 4 0 0 No No x = 1
AFFX-YER148w3_at AFFX-YER148w3 TATA-binding protein, general transcription factor that interacts with other factors to form the preinitiation complex at promoters, essential for viability 1.27632642378501 1741.9091796875 1669.77966308594 SPT15 6360 // transcription from RNA polymerase I promoter // traceable author statement /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 6384 // transcription initiation from RNA polymerase III promoter // traceable author statement 120 // RNA polymerase I transcription factor complex // traceable author statement /// 126 // transcription factor TFIIIB complex // traceable author statement /// 5634 // nucleus // inferred from direct assay /// 5669 // transcription factor TFIID complex // traceable author statement /// 5669 // transcription factor TFIID complex // inferred from direct assay 3677 // DNA binding // inferred from physical interaction /// 3677 // DNA binding // traceable author statement /// 3701 // RNA polymerase I transcription factor activity // traceable author statement /// 3709 // RNA polymerase III transcription factor activity // traceable author statement /// 16251 // general RNA polymerase II transcription factor activity // traceable author statement 1664.41223144531 1901.79846191406 1582.01989746094 1675.14709472656 3.77846420818173E-10 4.01554567375229E-10 3.77846420818173E-10 3.77846420818173E-10 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /GEN=TFIID /DB_XREF=gb:X16860.1 /DB_XREF=spd:YER148W /NOTE=SIF corresponding to nucleotides 745-955 of gb:X16860.1 /DEF=Yeast gene for transcription initiation factor IID (TFIID). --- --- --- --- --- --- S0000950 // SPT15 SGDID:S0000950, Chr V from 465298-466020, Verified ORF // sgd // 50 // --- /// GENSCAN00000016927 // cdna:Genscan chromosome:SGD1:V:465298:466020:1 // ensembl // 50 // --- /// GENEFINDER00000019595 // cdna:GeneFinder chromosome:SGD1:V:465298:466020:1 // ensembl // 50 // --- /// YER148W // cdna:known chromosome:SGD1:V:465298:466020:1 gene:YER148W // ensembl // 50 // --- --- AFFX_control cerevisiae_gene 1.16984832633106 1.14262466111692 -1.27632642378501 -1.05208046631816 1.00644964214901 Max fold change below threshold 4 1.27632642378501 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771191_at YCL034W.S1 Protein of unknown function; binds Las17p, which is a homolog of human Wiskott-Aldrich Syndrome protein involved in actin patch assembly and actin polymerization 1.27621817071942 2141.46502685547 2006.60693359375 LSB5 6897 // endocytosis // inferred from mutant phenotype /// 7015 // actin filament organization // inferred from physical interaction 5938 // cell cortex // inferred from direct assay --- 1972.26245117188 1845.24816894531 2437.68188476563 2040.95141601563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL034W /GEN=LSB5 /DB_XREF=GI:10383760 /SEG=NC_001135:+61658,62722 /DEF=LAs17 Binding protein /NOTE=Lsb5p; go_component: cell cortex [goid GO:0005938] [evidence IDA] [pmid 12388763]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: actin filament organization [goid GO:0007015] [evidence IPI] [pmid 10512884]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 12388763] --- --- --- --- --- --- S0000539 // LSB5 SGDID:S0000539, Chr III from 61658-62722, Verified ORF // sgd // 11 // --- /// GENSCAN00000022439 // cdna:Genscan chromosome:SGD1:III:61658:62722:1 // ensembl // 11 // --- /// GENEFINDER00000023383 // cdna:GeneFinder chromosome:SGD1:III:61658:62722:1 // ensembl // 11 // --- /// YCL034W // cdna:known chromosome:SGD1:III:61658:62722:1 gene:YCL034W // ensembl // 11 // --- --- No cerevisiae_gene -1.27621817071942 -1.06883317071609 1.09098648034564 1.23598250492332 1.03482749712288 Max fold change below threshold 4 1.27621817071942 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773393_at YGL073W.S1 Trimeric heat shock transcription factor, activates multiple genes in response to hyperthermia; recognizes variable heat shock elements (HSEs) consisting of inverted NGAAN repeats; constitutively DNA-bound; posttranslationally regulated 1.27603936271086 1358.64111328125 1237.73382568359 HSF1 6357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 6950 // response to stress // inferred from mutant phenotype /// 9408 // response to heat // inferred from mutant phenotype /// 30474 // spindle pole body duplication // inferred from mutant phenotype 5634 // nucleus // non-traceable author statement /// 5739 // mitochondrion // inferred from direct assay 3700 // transcription factor activity // inferred from direct assay 1197.23022460938 1425.58471679688 1291.69750976563 1278.23742675781 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL073W /GEN=HSF1 /DB_XREF=GI:6321364 /SEG=NC_001139:+368754,371255 /DEF=heat shock transcription factor /NOTE=Hsf1p; go_component: nucleus [goid GO:0005634] [evidence NAS] [pmid 10888672]; go_function: transcription factor activity [goid GO:0003700] [evidence IDA] [pmid 3044612]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IDA] [pmid 3044612]; go_process: response to heat [goid GO:0009408] [evidence IMP] [pmid 2017170]; go_process: response to stress [goid GO:0006950] [evidence IMP] [pmid 2017170] --- --- --- --- --- --- S0003041 // HSF1 SGDID:S0003041, Chr VII from 368756-371257, Verified ORF // sgd // 11 // --- /// GENSCAN00000019294 // cdna:Genscan chromosome:SGD1:VII:368756:371257:1 // ensembl // 11 // --- /// YGL073W // cdna:known chromosome:SGD1:VII:368756:371257:1 gene:YGL073W // ensembl // 11 // --- YGL072C // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene -1.27603936271086 1.19073565592784 -1.05462898822949 1.07890486158339 1.06766217598196 Max fold change below threshold 4 1.27603936271086 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776238_at YLL053C.S1 Water channel that mediates the transport of water across cell membranes and may be involved in freeze tolerance; disrupted by a stop codon in many S. cerevisiae strains /// Hypothetical protein; maybe continuous with YLL052C (AQY2) in some strain backgrounds including Sigma1278b; functions as an aquaporin in these strains. 1.27579933272855 1778.53070068359 1672.5107421875 AQY2 6833 // water transport // inferred from sequence similarity 5789 // endoplasmic reticulum membrane // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 15250 // water channel activity // inferred from sequence similarity 1686.44616699219 1583.13854980469 1973.9228515625 1658.57531738281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLL053C /GEN=JLP1 /DB_XREF=GI:6322975 /SEG=NC_001144:-35502,35960 /DEF=Hypothetical ORF; maybe continuous with YLL052C (AQY2) in some strain backgrounds including Sigma1278b; functions as an aquaporin in these strains. /NOTE=Yll053cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003975 // span:48-70,90-112 // numtm:2 /// S0003976 // span:10-32,39-58,68-90,111-133 // numtm:4 S0003976 // YLL053C SGDID:S0003976, Chr XII from 35960-35502, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017664 // cdna:Genscan chromosome:SGD1:XII:35502:35933:-1 // ensembl // 11 // --- /// GENEFINDER00000024906 // cdna:GeneFinder chromosome:SGD1:XII:35502:35933:-1 // ensembl // 11 // --- /// YLL053C // cdna:known chromosome:SGD1:XII:35502:35960:-1 gene:YLL053C // ensembl // 11 // --- --- No cerevisiae_gene 1.27579933272855 -1.06525494385835 1.07912022894506 1.17046300688212 -1.01680409042464 Max fold change below threshold 4 1.27579933272855 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777157_at YML114C.S1 TFIID subunit (65 kDa), involved in RNA polymerase II transcription initiation 1.2755325809529 616.678588867188 735.181579589844 TAF8 6366 // transcription from RNA polymerase II promoter // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5669 // transcription factor TFIID complex // inferred from direct assay 3702 // RNA polymerase II transcription factor activity // inferred from physical interaction 681.911987304688 534.609619140625 698.74755859375 788.451171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML114C /GEN=TAF8 /DB_XREF=GI:6323522 /SEG=NC_001145:-42043,43575 /DEF=TFIID subunit (65 kDa), involved in RNA polymerase II transcription initiation /NOTE=Taf8p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_component: transcription factor TFIID complex [goid GO:0005669] [evidence IDA] [pmid 10788514]; go_function: RNA polymerase II transcription factor activity [goid GO:0003702] [evidence IPI] [pmid 10788514]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IPI] [pmid 10788514] --- --- --- --- --- --- S0004582 // TAF8 SGDID:S0004582, Chr XIII from 43575-42043, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018621 // cdna:Genscan chromosome:SGD1:XIII:42043:43575:-1 // ensembl // 10 // --- /// GENEFINDER00000021942 // cdna:GeneFinder chromosome:SGD1:XIII:42043:43362:-1 // ensembl // 10 // --- /// YML114C // cdna:known chromosome:SGD1:XIII:42043:43575:-1 gene:YML114C // ensembl // 10 // --- --- No cerevisiae_gene -1.18109769408655 -1.2755325809529 -1.02667681785163 1.02468877450829 1.15623597554197 Max fold change below threshold 4 1.2755325809529 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772846_at YKL203C.S1 PIK-related protein kinase and rapamycin target; subunit of TORC1, a complex that regulates growth in response to nutrients and TORC2, a complex that regulates cell-cycle dependent polarization of the actin cytoskeleton; involved in meiosis 1.27542648259217 656.886596679688 600.345977783203 TOR2 74 // regulation of cell cycle // traceable author statement /// 80 // G1 phase of mitotic cell cycle // traceable author statement /// 6897 // endocytosis // inferred from mutant phenotype /// 7010 // cytoskeleton organization and biogenesis // inferred from mutant phenotype /// 7046 // ribosome biogenesis // inferred from mutant phenotype /// 7165 // signal transduction // traceable author statement /// 7266 // Rho protein signal transduction // inferred from mutant phenotype /// 30037 // actin filament reorganization during cell cycle // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5774 // vacuolar membrane // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 5515 // protein binding // inferred from physical interaction /// 16303 // phosphatidylinositol 3-kinase activity // traceable author statement 559.081237792969 600.706176757813 713.067016601563 641.610717773438 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL203C /GEN=TOR2 /DB_XREF=GI:42759860 /SEG=NC_001143:-55936,63360 /DEF=putative protein/phosphatidylinositol kinase involved in signaling activation of translation initiation, distribution of the actin cytoskeleton, and meiosis /NOTE=Tor2p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 10973982]; go_component: vacuolar membrane [goid GO:0005774] [evidence IDA] [pmid 8846782]; go_function: phosphatidylinositol 3-kinase activity [goid GO:0016303] [evidence TAS] [pmid 8186460]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12631735]; go_process: G1 phase of mitotic cell cycle [goid GO:0000080] [evidence TAS] [pmid 8186460]; go_process: Rho protein signal transduction [goid GO:0007266] [evidence IMP] [pmid 9038344]; go_process: cell cycle-dependent actin filament reorganization [goid GO:0030037] [evidence TAS] [pmid 9038344]; go_process: cytoskeleton organization and biogenesis [goid GO:0007010] [evidence IMP] [pmid 9475724]; go_process: regulation of cell cycle [goid GO:0000074] [evidence TAS] [pmid 9475724]; go_process: ribosome biogenesis [goid GO:0007046] [evidence IMP] [pmid 10198052]; go_process: signal transduction [goid GO:0007165] [evidence TAS] [pmid 8186460] --- --- --- --- scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 6.19999980926514 /// scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 4.90000009536743 --- S0001686 // TOR2 SGDID:S0001686, Chr XI from 63360-55936, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018267 // cdna:Genscan chromosome:SGD1:XI:55936:67467:-1 // ensembl // 11 // --- /// GENEFINDER00000023011 // cdna:GeneFinder chromosome:SGD1:XI:55936:61167:-1 // ensembl // 11 // --- /// YKL203C // cdna:known chromosome:SGD1:XI:55936:63360:-1 gene:YKL203C // ensembl // 11 // --- --- No cerevisiae_gene -1.25473344067986 1.0744523982403 1.09850745421364 1.27542648259217 1.14761625753399 Max fold change below threshold 4 1.27542648259217 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776538_at YKL117W.S1 Co-chaperone that binds to and regulates Hsp90 family chaperones; important for pp60v-src activity in yeast; homologous to the mammalian p23 proteins 1.27529057048982 3397.09045410156 3676.12268066406 SBA1 6457 // protein folding // inferred from mutant phenotype /// 6457 // protein folding // inferred from sequence similarity /// 6457 // protein folding // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 51087 // chaperone binding // inferred from mutant phenotype /// 51087 // chaperone binding // inferred from physical interaction /// 51087 // chaperone binding // inferred from sequence similarity 3931.06201171875 3082.4833984375 3711.69750976563 3421.18334960938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL117W /GEN=SBA1 /DB_XREF=GI:6322732 /SEG=NC_001143:+219970,220620 /DEF=SBA1p binds to Hsp90 and is important for pp60v-src activity in yeast, shows similarity to the mammalian P-Twenty-Three proteins /NOTE=Sba1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10207098]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10207098]; go_function: co-chaperone activity [goid GO:0003767] [evidence IMP,IPI,ISS] [pmid 9632755]; go_process: protein folding [goid GO:0006457] [evidence IMP,IPI,ISS] [pmid 9632755] --- --- --- --- --- --- S0001600 // SBA1 SGDID:S0001600, Chr XI from 219970-220620, Verified ORF // sgd // 11 // --- /// GENSCAN00000018328 // cdna:Genscan chromosome:SGD1:XI:219970:220620:1 // ensembl // 11 // --- /// GENEFINDER00000023052 // cdna:GeneFinder chromosome:SGD1:XI:219970:220620:1 // ensembl // 11 // --- /// YKL117W // cdna:known chromosome:SGD1:XI:219970:220620:1 gene:YKL117W // ensembl // 11 // --- --- No cerevisiae_gene -1.06556477686818 -1.27529057048982 -1.01271527140789 -1.05910085651537 -1.14903576043874 Max fold change below threshold 4 1.27529057048982 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sc-ACT1-5_at AFFX-r2-Sc-ACT1-5 Actin, structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions 1.27453898362666 4046.21032714844 4492.25927734375 ACT1 1 // mitochondrion inheritance // traceable author statement /// 11 // vacuole inheritance // traceable author statement /// 132 // establishment of mitotic spindle orientation // traceable author statement /// 910 // cytokinesis // traceable author statement /// 1300 // chronological cell aging // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 6887 // exocytosis // traceable author statement /// 6897 // endocytosis // traceable author statement /// 6970 // response to osmotic stress // traceable author statement /// 7047 // cell wall organization and biogenesis // traceable author statement /// 7119 // budding cell isotropic bud growth // traceable author statement /// 9306 // protein secretion // traceable author statement /// 16573 // histone acetylation // inferred from direct assay /// 30037 // actin filament reorganization during cell cycle // traceable author statement /// 30050 // vesicle transport along actin filament // traceable author statement /// 30437 // sporulation (sensu Fungi) // traceable author statement /// 30468 // establishment of cell polarity (sensu Fungi) // traceable author statement 123 // histone acetyltransferase complex // inferred from direct assay /// 142 // contractile ring (sensu Saccharomyces) // traceable author statement /// 812 // SWR1 complex // inferred from physical interaction /// 5884 // actin filament // traceable author statement /// 30479 // actin cortical patch // traceable author statement /// 30482 // actin cable // traceable author statement /// 31011 // INO80 complex // inferred from physical interaction /// 43189 // H4/H2A histone acetyltransferase complex // inferred from physical interaction 5200 // structural constituent of cytoskeleton // traceable author statement 4947.79736328125 3882.02905273438 4210.3916015625 4036.72119140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=ACT1 SGD:YFL039C Actin (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- S0001855 // ACT1 SGDID:S0001855, Chr VI from 54695-54686,54377-53260, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018587 // cdna:GeneFinder chromosome:SGD1:VI:53260:54342:-1 // ensembl // 9 // --- /// GENSCAN00000023208 // cdna:Genscan chromosome:SGD1:VI:53260:54342:-1 // ensembl // 9 // --- /// YFL039C // cdna:known chromosome:SGD1:VI:53260:54695:-1 gene:YFL039C // ensembl // 11 // --- --- AFFX_control cerevisiae_gene -1.14566545302344 -1.27453898362666 -1.21082033462464 -1.17513947193061 -1.22569707658151 Max fold change below threshold 4 1.27453898362666 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770839_at YOR174W.S1 Member of RNA Polymerase II transcriptional regulation mediator; Stoichiometric member of mediator complex 1.27446409144203 727.408935546875 821.044616699219 MED4 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from direct assay 753.679321289063 704.816833496094 750.001037597656 888.409912109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR174W /GEN=MED4 /DB_XREF=GI:6324748 /SEG=NC_001147:+658747,659601 /DEF=Member of RNA Polymerase II transcriptional regulation mediator /NOTE=Med4p; go_component: mediator complex [goid GO:0000119] [evidence IDA] [pmid 9420330]; go_function: RNA polymerase II transcription mediator activity [goid GO:0016455] [evidence IDA] [pmid 9420330]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence IDA] [pmid 9420330] --- --- --- --- --- --- S0005700 // MED4 SGDID:S0005700, Chr XV from 658747-659601, Verified ORF // sgd // 11 // --- /// GENSCAN00000017594 // cdna:Genscan chromosome:SGD1:XV:658747:659601:1 // ensembl // 11 // --- /// GENEFINDER00000022856 // cdna:GeneFinder chromosome:SGD1:XV:658747:659601:1 // ensembl // 11 // --- /// YOR174W // cdna:known chromosome:SGD1:XV:658747:659601:1 gene:YOR174W // ensembl // 11 // --- --- No cerevisiae_gene 1.22991246879525 -1.06932650508728 1.27446409144203 -1.00490437147019 1.1787638150797 Max fold change below threshold 4 1.27446409144203 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773207_at YNL244C.S1 Translation initiation factor eIF1; component of a complex involved in recognition of the initiator codon; modulates translation accuracy at the initiation and elongation phases 1.27402105594309 3272.22192382813 3222.57458496094 SUI1 6413 // translational initiation // traceable author statement 5840 // ribosome // traceable author statement 3743 // translation initiation factor activity // traceable author statement 3424.87963867188 3856.19970703125 2688.244140625 3020.26953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL244C /GEN=SUI1 /DB_XREF=GI:6324085 /SEG=NC_001146:-187169,187495 /DEF=translation initiation factor eIF1 /NOTE=Sui1p; go_component: ribosome [goid GO:0005840] [evidence TAS] [pmid 9841679]; go_function: translation initiation factor activity [goid GO:0003743] [evidence TAS] [pmid 9841679]; go_process: translational initiation [goid GO:0006413] [evidence TAS] [pmid 9841679] --- --- --- --- --- --- S0005188 // SUI1 SGDID:S0005188, Chr XIV from 187495-187169, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020459 // cdna:GeneFinder chromosome:SGD1:XIV:187169:187495:-1 // ensembl // 11 // --- /// YNL244C // cdna:known chromosome:SGD1:XIV:187169:187495:-1 gene:YNL244C // ensembl // 11 // --- --- No cerevisiae_gene -1.27072038250491 1.12593729236179 -1.19959906493522 -1.27402105594309 -1.13396490056118 Max fold change below threshold 4 1.27402105594309 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769421_at YGR056W.S1 One of 15 subunits of the 'Remodel the Structure of Chromatin' (RSC) complex; required for expression of mid-late sporulation-specific genes; contains two essential bromodomains, a bromo-adjacent homology (BAH) domain, and an AT hook 1.27352150027876 755.746185302734 705.964721679688 RSC1 6338 // chromatin remodeling // inferred from direct assay 16586 // RSC complex // inferred from physical interaction --- 655.841186523438 762.326721191406 749.165649414063 756.088256835938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR056W /GEN=RSC1 /DB_XREF=GI:6321493 /SEG=NC_001139:+601663,604449 /DEF=RSC1 is a member of RSC complex, which remodels the structure of chromatin /NOTE=Rsc1p; go_component: nucleosome remodeling complex [goid GO:0005679] [evidence IPI] [pmid 10025404]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 10025404] --- --- --- --- --- --- S0003288 // RSC1 SGDID:S0003288, Chr VII from 601665-604451, Verified ORF // sgd // 11 // --- /// GENSCAN00000019385 // cdna:Genscan chromosome:SGD1:VII:601665:604451:1 // ensembl // 11 // --- /// GENEFINDER00000021623 // cdna:GeneFinder chromosome:SGD1:VII:601665:604451:1 // ensembl // 11 // --- /// YGR056W // cdna:known chromosome:SGD1:VII:601665:604451:1 gene:YGR056W // ensembl // 11 // --- --- No cerevisiae_gene -1.27352150027876 1.16236481766636 -1.03102684701181 1.14229735004191 1.15285266063253 Max fold change below threshold 4 1.27352150027876 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775863_at YIL088C.S1 Putative transporter, member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters 1.27260265021887 1750.15728759766 1922.18713378906 AVT7 6810 // transport // inferred from sequence similarity 5773 // vacuole // no biological data available 5215 // transporter activity // inferred from sequence similarity 1916.27270507813 1624.75048828125 1875.56408691406 1928.1015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL088C /GEN=AVT7 /DB_XREF=GI:6322103 /SEG=NC_001141:-197928,199400 /DEF=Putative transporter, member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters /NOTE=Avt7p; go_component: vacuole [goid GO:0005773] [evidence ND] [pmid 11274162]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 11274162]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 11274162] --- --- --- --- --- S0001350 // span:35-57,70-92,118-135,142-164,189-211,224-246,264-286,393-415,420-442,463-485 // numtm:10 S0001350 // AVT7 SGDID:S0001350, Chr IX from 199400-197928, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016410 // cdna:Genscan chromosome:SGD1:IX:197928:199400:-1 // ensembl // 11 // --- /// GENEFINDER00000019008 // cdna:GeneFinder chromosome:SGD1:IX:197928:199400:-1 // ensembl // 11 // --- /// YIL088C // cdna:known chromosome:SGD1:IX:197928:199400:-1 gene:YIL088C // ensembl // 11 // --- --- No cerevisiae_gene -1.27260265021887 -1.17942583732057 -1.04554204675096 -1.02170473323097 1.00617284658417 Max fold change below threshold 4 1.27260265021887 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773480_at YKL013C.S1 Subunit of the ARP2/3 complex, which is required for the motility and integrity of cortical actin patches 1.27210546929371 2196.50958251953 2153.22204589844 ARC19 1 // mitochondrion inheritance // traceable author statement /// 147 // actin cortical patch assembly // inferred from mutant phenotype 5885 // Arp2/3 protein complex // inferred from direct assay 5198 // structural molecule activity // inferred from mutant phenotype 2157.66821289063 1958.15881347656 2434.8603515625 2148.77587890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL013C /GEN=ARC19 /DB_XREF=GI:6322839 /SEG=NC_001143:-417151,417666 /DEF=Arp complex subunit /NOTE=Arc19p; go_component: Arp2/3 protein complex [goid GO:0005885] [evidence IDA] [pmid 9210376]; go_function: structural molecule activity [goid GO:0005198] [evidence IMP] [pmid 10377407]; go_process: actin cortical patch assembly [goid GO:0000147] [evidence IMP] [pmid 10377407] --- --- --- --- --- --- S0001496 // ARC19 SGDID:S0001496, Chr XI from 417666-417151, reverse complement, Verified ORF // sgd // 11 // --- /// YKL013C // cdna:known chromosome:SGD1:XI:417151:417666:-1 gene:YKL013C // ensembl // 11 // --- --- No cerevisiae_gene -1.27210546929371 -1.10188621987195 1.239793369601 1.12846837943658 -1.00413832548646 Max fold change below threshold 4 1.27210546929371 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774277_at YDR339C.S1 Protein required for cell viability 1.27176591839781 1109.79833984375 1496.58563232422 --- --- --- --- 1404.92456054688 1114.89294433594 1104.70373535156 1588.24670410156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR339C /GEN=MRPS28 /DB_XREF=GI:6320546 /SEG=NC_001136:-1149941,1150510 /DEF=Protein required for cell viability /NOTE=Ydr339cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002747 // YDR339C SGDID:S0002747, Chr IV from 1150512-1149943, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023887 // cdna:GeneFinder chromosome:SGD1:IV:1149943:1150512:-1 // ensembl // 11 // --- /// GENSCAN00000025367 // cdna:Genscan chromosome:SGD1:IV:1149943:1150512:-1 // ensembl // 11 // --- /// YDR339C // cdna:known chromosome:SGD1:IV:1149943:1150512:-1 gene:YDR339C // ensembl // 11 // --- --- No cerevisiae_gene 1.25434988985278 -1.26014301882921 1.0198536954362 -1.27176591839781 1.13048540021489 Max fold change below threshold 4 1.27176591839781 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778322_at YGL097W.S1 Nucleotide exchange factor for Gsp1p, localizes to the nucleus, required for nucleocytoplasmic trafficking of macromolecules; potentially phosphorylated by Cdc28p 1.27047414019419 705.648254394531 824.792205810547 SRM1 54 // ribosome-nucleus export // inferred from mutant phenotype /// 6407 // rRNA-nucleus export // inferred from mutant phenotype 5634 // nucleus // traceable author statement 4871 // signal transducer activity // inferred from mutant phenotype 726.537414550781 615.093505859375 796.203002929688 923.046997070313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL097W /GEN=SRM1 /DB_XREF=GI:6321341 /SEG=NC_001139:+321783,323231 /DEF=Nucleotide exchange factor for Gsp1p, localizes to the nucleus, required for nucleocytoplasmic trafficking of macromolecules; potentially phosphorylated by Cdc28p /NOTE=Srm1p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 1666302]; go_function: signal transducer activity [goid GO:0004871] [evidence IMP] [pmid 2548085]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence IMP] [pmid 11739405]; go_process: ribosome-nucleus export [goid GO:0000054] [evidence IMP] [pmid 11739405] --- --- --- --- --- --- S0003065 // SRM1 SGDID:S0003065, Chr VII from 321785-323233, Verified ORF // sgd // 11 // --- /// GENSCAN00000019279 // cdna:Genscan chromosome:SGD1:VII:321785:323233:1 // ensembl // 11 // --- /// GENEFINDER00000021459 // cdna:GeneFinder chromosome:SGD1:VII:321785:323233:1 // ensembl // 11 // --- /// YGL097W // cdna:known chromosome:SGD1:VII:321785:323233:1 gene:YGL097W // ensembl // 11 // --- --- No cerevisiae_gene 1.07168829501758 -1.18118206033683 1.06095707773513 1.09588713118371 1.27047414019419 Max fold change below threshold 4 1.27047414019419 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773772_at YHR081W.S1 Substrate-specific nuclear cofactor for exosome activity in the processing of stable RNAs; homolog of mammalian nuclear matrix protein C1D, which is involved in regulation of DNA repair and recombination 1.27013710782795 710.517395019531 804.702209472656 LRP1 724 // double-strand break repair via homologous recombination // inferred from direct assay /// 6281 // DNA repair // inferred from direct assay /// 6303 // double-strand break repair via nonhomologous end-joining // inferred from direct assay /// 6402 // mRNA catabolism // inferred from direct assay /// 16180 // snRNA processing // inferred from direct assay /// 30489 // processing of 27S pre-rRNA // inferred from mutant phenotype /// 43144 // snoRNA processing // inferred from direct assay 176 // nuclear exosome (RNase complex) // inferred from physical interaction --- 770.005126953125 683.111694335938 737.923095703125 839.399291992188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR081W /GEN=LRP1 /DB_XREF=GI:6321873 /SEG=NC_001140:+267539,268093 /DEF=Like an rRNA Processing protein. Homolog of mammalian C1D, which is a nuclear matrix protein involved in regulation of DNA repair and recombination. /NOTE=Lrp1p; go_component: nuclear exosome (RNase complex) [goid GO:0000176] [evidence IPI] [pmid 12837249]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: double-strand break repair via homologous recombination [goid GO:0000724] [evidence IDA] [pmid 12421302]; go_process: double-strand break repair via nonhomologous end-joining [goid GO:0006303] [evidence IDA] [pmid 12421302]; go_process: processing of 27S pre-rRNA [goid GO:0030489] [evidence IMP] [pmid 12837249] --- --- --- --- --- --- S0001123 // LRP1 SGDID:S0001123, Chr VIII from 267539-268093, Verified ORF // sgd // 11 // --- /// YHR081W // cdna:known chromosome:SGD1:VIII:267539:268093:1 gene:YHR081W // ensembl // 11 // --- --- No cerevisiae_gene 1.27013710782795 -1.12720237896331 1.03863404546883 -1.04347611754777 1.09012169219399 Max fold change below threshold 4 1.27013710782795 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770290_at YMR257C.S1 Specific translational activator for the COX2 mRNA, located in the mitochondrial inner membrane 1.26981701641493 361.189224243164 492.539093017578 PET111 6412 // protein biosynthesis // inferred from mutant phenotype 5743 // mitochondrial inner membrane // inferred from direct assay 45182 // translation regulator activity // inferred from mutant phenotype 450.676574707031 354.914581298828 367.4638671875 534.401611328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR257C /GEN=PET111 /DB_XREF=GI:6323913 /SEG=NC_001145:-779628,782030 /DEF=Specific translational activator for the COX2 mRNA, located in the mitochondrial inner membrane /NOTE=Pet111p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 11106667]; go_function: translation regulator activity [goid GO:0045182] [evidence IMP] [pmid 3034718]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP] [pmid 3034718] --- --- --- --- --- --- S0004870 // PET111 SGDID:S0004870, Chr XIII from 782030-779628, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018929 // cdna:Genscan chromosome:SGD1:XIII:779628:781961:-1 // ensembl // 11 // --- /// YMR257C // cdna:known chromosome:SGD1:XIII:779628:782030:-1 gene:YMR257C // ensembl // 11 // --- GENEFINDER00000021787 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene 1.19839122629889 -1.26981701641493 1.21826342094981 -1.22645140094025 1.18577632235605 Max fold change below threshold 4 1.26981701641493 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776607_at YIL068C.S1 Essential 88kDa subunit of the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, and Exo84p), which has the essential function of mediating polarized targeting of secretory vesicles to active sites of exocytosis 1.26966503552934 609.128768920898 605.406219482422 SEC6 910 // cytokinesis // inferred from mutant phenotype /// 6893 // Golgi to plasma membrane transport // traceable author statement /// 6904 // vesicle docking during exocytosis // traceable author statement /// 6906 // vesicle fusion // traceable author statement /// 7121 // bipolar bud site selection // inferred from mutant phenotype 145 // exocyst // traceable author statement /// 145 // exocyst // inferred from physical interaction /// 5934 // bud tip // inferred from physical interaction 5515 // protein binding // inferred from physical interaction /// 5515 // protein binding // traceable author statement 560.845031738281 506.172210693359 712.085327148438 649.967407226563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL068C /GEN=SEC6 /DB_XREF=GI:6322121 /SEG=NC_001141:-233054,235471 /DEF=cytoplasmic protein involved in fusion of post-Golgi vesicles with the plasma membrane. The Exocyst complex is required for exocytosis. /NOTE=Sec6p; go_component: actin cap (sensu Fungi) [goid GO:0030478] [evidence IDA] [pmid 10652251]; go_component: exocyst [goid GO:0000145] [evidence TAS] [pmid 9700152]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi to plasma membrane transport [goid GO:0006893] [evidence TAS] [pmid 9700152]; go_process: cytokinesis [goid GO:0000910] [evidence IMP] [pmid 10652251]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 11208128]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence TAS] [pmid 9700152]; go_process: polar budding [goid GO:0007121] [evidence IMP] [pmid 10652251]; go_process: vesicle docking during exocytosis [goid GO:0006904] [evidence TAS] [pmid 9700152]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 9700152] --- --- --- --- --- --- S0001330 // SEC6 SGDID:S0001330, Chr IX from 235471-233054, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016425 // cdna:Genscan chromosome:SGD1:IX:233054:235471:-1 // ensembl // 11 // --- /// GENEFINDER00000019086 // cdna:GeneFinder chromosome:SGD1:IX:233054:234868:-1 // ensembl // 11 // --- /// YIL068C // cdna:known chromosome:SGD1:IX:233054:235471:-1 gene:YIL068C // ensembl // 11 // --- YIL068W-A // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene -1.25703972946426 -1.10801229283218 1.01886322442821 1.26966503552934 1.15890731029935 Max fold change below threshold 4 1.26966503552934 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779917_at YML036W.S1 Hypothetical protein 1.26943176336357 160.463020324707 209.018440246582 --- --- --- --- 203.416793823242 160.242401123047 160.683639526367 214.620086669922 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML036W /GEN=YMD8 /DB_XREF=GI:6323605 /SEG=NC_001145:+205642,206211 /DEF=Hypothetical ORF /NOTE=Yml036wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004500 // YML036W SGDID:S0004500, Chr XIII from 205642-206211, Uncharacterized ORF // sgd // 11 // --- /// YML036W // cdna:known chromosome:SGD1:XIII:205642:206211:1 gene:YML036W // ensembl // 11 // --- --- No cerevisiae_gene -1.09508676044847 -1.26943176336357 1.1370585208763 -1.26594589482063 1.05507555515015 Max fold change below threshold 4 1.26943176336357 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772791_at YKR066C.S1 Mitochondrial cytochrome-c peroxidase; degrades reactive oxygen species in mitochondria, involved in the response to oxidative stress 1.26913048259038 5044.42431640625 4748.23657226563 CCP1 6979 // response to oxidative stress // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5758 // mitochondrial intermembrane space // traceable author statement /// 5758 // mitochondrial intermembrane space // inferred from direct assay 4130 // cytochrome-c peroxidase activity // inferred from mutant phenotype 5167.9619140625 5314.767578125 4774.0810546875 4328.51123046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR066C /GEN=CCP1 /DB_XREF=GI:6322919 /SEG=NC_001143:-565755,566840 /DEF=Cytochrome-c peroxidase /NOTE=Ccp1p; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence TAS] [pmid 12417197]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11914276]; go_function: cytochrome-c peroxidase activity [goid GO:0004130] [evidence IMP] [pmid 10589830]; go_process: response to oxidative stress [goid GO:0006979] [evidence IMP] [pmid 10589830] --- --- --- --- --- S0001774 // span:20-37 // numtm:1 S0001774 // CCP1 SGDID:S0001774, Chr XI from 566840-565755, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018472 // cdna:Genscan chromosome:SGD1:XI:565755:566285:-1 // ensembl // 9 // --- /// GENEFINDER00000023055 // cdna:GeneFinder chromosome:SGD1:XI:565755:566840:-1 // ensembl // 11 // --- /// YKR066C // cdna:known chromosome:SGD1:XI:565755:566840:-1 gene:YKR066C // ensembl // 11 // --- --- No cerevisiae_gene -1.26913048259038 1.02840687808922 -1.12695967088986 -1.08250401592748 -1.19393519824664 Max fold change below threshold 4 1.26913048259038 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771931_at YPR141C.S1 Minus-end-directed microtubule motor that functions in mitosis and meiosis, localizes to the spindle pole body and localization is dependent on functional Cik1p, required for nuclear fusion during mating; potential Cdc28p substrate 1.26905751989232 436.009140014648 508.462539672852 KAR3 742 // karyogamy during conjugation with cellular fusion // inferred from mutant phenotype /// 7064 // mitotic sister chromatid cohesion // inferred from genetic interaction /// 7064 // mitotic sister chromatid cohesion // inferred from mutant phenotype /// 7067 // mitosis // inferred from genetic interaction /// 7126 // meiosis // inferred from mutant phenotype /// 7126 // meiosis // inferred from direct assay 5816 // spindle pole body // inferred from direct assay /// 5874 // microtubule // traceable author statement 3774 // motor activity // inferred from direct assay /// 3777 // microtubule motor activity // traceable author statement 482.249603271484 475.764343261719 396.253936767578 534.675476074219 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR141C /GEN=KAR3 /DB_XREF=GI:6325399 /SEG=NC_001148:-815728,817917 /DEF=Minus-end-directed microtubule motor that functions in mitosis and meiosis, localizes to the spindle pole body and localization is dependent on functional Cik1p, required for nuclear fusion during mating; potential Cdc28p substrate /NOTE=Kar3p; go_component: microtubule [goid GO:0005874] [evidence TAS] [pmid 9859995]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 11729143]; go_function: microtubule motor activity [goid GO:0003777] [evidence TAS] [pmid 9859995]; go_function: motor activity [goid GO:0003774] [evidence IDA] [pmid 8041770]; go_process: karyogamy during conjugation with cellular fusion [goid GO:0000742] [evidence IMP] [pmid 2138512]; go_process: meiosis [goid GO:0007126] [evidence IDA,IMP] [pmid 11729143]; go_process: mitosis [goid GO:0007067] [evidence IGI] [pmid 9201713] --- --- --- --- scop // a.4.5.ArsR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; ArsR-like transcriptional regulators // 2.79999995231628 --- S0006345 // KAR3 SGDID:S0006345, Chr XVI from 817919-815730, reverse complement, Verified ORF // sgd // 11 // --- /// M31719 // S.cerevisiae nuclear fusion protein (KAR3) mRNA, complete cds. // gb // 11 // --- /// GENSCAN00000017292 // cdna:Genscan chromosome:SGD1:XVI:815730:817214:-1 // ensembl // 11 // --- /// GENEFINDER00000020771 // cdna:GeneFinder chromosome:SGD1:XVI:815730:817835:-1 // ensembl // 11 // --- /// YPR141C // cdna:known chromosome:SGD1:XVI:815730:817919:-1 gene:YPR141C // ensembl // 11 // --- --- No cerevisiae_gene -1.26905751989232 -1.01363124433686 -1.13577773296037 -1.21702160792499 1.10871107502648 Max fold change below threshold 4 1.26905751989232 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779805_at YLR350W.S1 Evolutionarily conserved protein with similarity to Orm1p, required for resistance to agents that induce the unfolded protein response; human ortholog is located in the endoplasmic reticulum 1.268951359153 5728.21850585938 4719.12817382813 ORM2 6986 // response to unfolded protein // inferred from mutant phenotype /// 6986 // response to unfolded protein // inferred from sequence similarity 5783 // endoplasmic reticulum // inferred from direct assay --- 5234.2958984375 6642.06689453125 4814.3701171875 4203.96044921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR350W /GEN=ORM2 /DB_XREF=GI:6323382 /SEG=NC_001144:+828729,829379 /DEF=Evolutionarily conserved protein with similarity to Orm1p, required for resistance to agents that induce the unfolded protein response; human ortholog is located in the endoplasmic reticulum /NOTE=Orm2p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to unfolded protein [goid GO:0006986] [evidence IMP,ISS] [pmid 12093374] --- --- --- --- --- S0004342 // span:80-99,114-136,157-174,179-198 // numtm:4 S0004342 // ORM2 SGDID:S0004342, Chr XII from 828729-829379, Verified ORF // sgd // 11 // --- /// GENSCAN00000018085 // cdna:Genscan chromosome:SGD1:XII:828729:829379:1 // ensembl // 11 // --- /// YLR350W // cdna:known chromosome:SGD1:XII:828729:829379:1 gene:YLR350W // ensembl // 11 // --- --- No cerevisiae_gene -1.23444233685308 1.268951359153 -1.12977376149315 -1.08722341054562 -1.24508685599319 Max fold change below threshold 4 1.268951359153 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774445_at YGR240C.S1 Alpha subunit of heterooctameric phosphofructokinase involved in glycolysis, indispensable for anaerobic growth, activated by fructose-2,6-bisphosphate and AMP, mutation inhibits glucose induction of cell cycle-related genes 1.26887855300198 4565.7734375 4519.80798339844 PFK1 6096 // glycolysis // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5945 // 6-phosphofructokinase complex // inferred from mutant phenotype 3872 // 6-phosphofructokinase activity // inferred from mutant phenotype 5055.43798828125 4932.42333984375 4199.12353515625 3984.17797851563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR240C /GEN=PFK1 /DB_XREF=GI:6321679 /SEG=NC_001139:-970775,973738 /DEF=phosphofructokinase alpha subunit /NOTE=Pfk1p; go_component: 6-phosphofructokinase complex [goid GO:0005945] [evidence IMP] [pmid 3007939]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: 6-phosphofructokinase activity [goid GO:0003872] [evidence IMP] [pmid 3007939]; go_process: glycolysis [goid GO:0006096] [evidence TAS] --- --- --- --- --- --- S0003472 // PFK1 SGDID:S0003472, Chr VII from 973739-970776, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019525 // cdna:Genscan chromosome:SGD1:VII:970776:973739:-1 // ensembl // 11 // --- /// GENEFINDER00000021672 // cdna:GeneFinder chromosome:SGD1:VII:970776:973739:-1 // ensembl // 11 // --- /// YGR240C // cdna:known chromosome:SGD1:VII:970776:973739:-1 gene:YGR240C // ensembl // 11 // --- --- No cerevisiae_gene -1.12065238003699 -1.0249400020967 -1.21301617294443 -1.20392694950641 -1.26887855300198 Max fold change below threshold 4 1.26887855300198 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777489_at YGL246C.S1 Nuclear protein that binds to and stabilizes the exoribonuclease Rat1p, required for pre-rRNA processing 1.26886301123042 248.991752624512 261.318962097168 RAI1 30489 // processing of 27S pre-rRNA // inferred from mutant phenotype /// 30846 // transcription termination from Pol II promoter, RNA polymerase(A) coupled // inferred from mutant phenotype 5634 // nucleus // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay 30234 // enzyme regulator activity // inferred from direct assay 247.877517700195 237.716873168945 260.266632080078 274.760406494141 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL246C /GEN=RAI1 /DB_XREF=GI:6321191 /SEG=NC_001139:-37617,38780 /DEF=Product of gene unknown /NOTE=Rai1p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 10805743]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12612077]; go_function: enzyme regulator activity [goid GO:0030234] [evidence IDA] [pmid 10805743]; go_process: RNA catabolism [goid GO:0006401] [evidence IPI] [pmid 10805743]; go_process: processing of 27S pre-rRNA [goid GO:0030489] [evidence IMP] [pmid 10805743] --- --- --- --- --- --- S0003215 // RAI1 SGDID:S0003215, Chr VII from 38780-37617, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019166 // cdna:Genscan chromosome:SGD1:VII:37617:38780:-1 // ensembl // 11 // --- /// YGL246C // cdna:known chromosome:SGD1:VII:37617:38780:-1 gene:YGL246C // ensembl // 11 // --- --- No cerevisiae_gene 1.09265965979109 -1.04274263074304 1.26886301123042 1.04998079089556 1.1084523075887 Max fold change below threshold 4 1.26886301123042 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775892_at YIL077C.S1 Hypothetical protein 1.26842173767792 1741.62829589844 2040.84326171875 --- --- 5739 // mitochondrion // inferred from direct assay --- 2086.5546875 1645.00073242188 1838.255859375 1995.1318359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL077C /GEN=THS1 /DB_XREF=GI:6322113 /SEG=NC_001141:-214988,215950 /DEF=Hypothetical ORF /NOTE=Yil077cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001339 // span:66-85,100-119 // numtm:2 S0001339 // YIL077C SGDID:S0001339, Chr IX from 215950-214988, reverse complement, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000016418 // cdna:Genscan chromosome:SGD1:IX:214988:215950:-1 // ensembl // 10 // --- /// GENEFINDER00000018992 // cdna:GeneFinder chromosome:SGD1:IX:214988:215902:-1 // ensembl // 10 // --- /// YIL077C // cdna:known chromosome:SGD1:IX:214988:215950:-1 gene:YIL077C // ensembl // 10 // --- --- No cerevisiae_gene -1.10112973492126 -1.26842173767792 1.13953490821068 -1.13507305137024 -1.04582296263121 Max fold change below threshold 4 1.26842173767792 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771397_at YDR458C.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery 1.26839934510937 286.467987060547 364.118316650391 --- --- --- --- 335.702819824219 277.540313720703 295.395660400391 392.533813476563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR458C /GEN=TOM1 /DB_XREF=GI:6320666 /SEG=NC_001136:-1380043,1382034 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery /NOTE=Ydr458cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.140.1.LEM domain // All alpha proteins; LEM/SAP HeH motif; LEM domain; LEM domain // 0.068000003695488 S0002866 // span:318-340 // numtm:1 S0002866 // YDR458C SGDID:S0002866, Chr IV from 1382036-1380045, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023638 // cdna:GeneFinder chromosome:SGD1:IV:1380045:1382036:-1 // ensembl // 11 // --- /// GENSCAN00000025458 // cdna:Genscan chromosome:SGD1:IV:1380045:1382036:-1 // ensembl // 11 // --- /// YDR458C // cdna:known chromosome:SGD1:IV:1380045:1382036:-1 gene:YDR458C // ensembl // 11 // --- --- No cerevisiae_gene -1.23972592010147 -1.20956417222345 1.26839934510937 -1.13645142711032 1.16928959274784 Max fold change below threshold 4 1.26839934510937 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774772_at YGR270W.S1 Protein of unknown function, member of CDC48/PAS1/SEC18 family of ATPases, potentially phosphorylated by Cdc28p 1.26837835675313 1035.54776000977 1006.48052978516 YTA7 30163 // protein catabolism // inferred from sequence similarity 5634 // nucleus // inferred from direct assay 16887 // ATPase activity // inferred from sequence similarity 980.975463867188 923.823303222656 1147.27221679688 1031.98559570313 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR270W /GEN=YTA7 /DB_XREF=GI:6321709 /SEG=NC_001139:+1027375,1031514 /DEF=Protein of unknown function, member of CDC48/PAS1/SEC18 family of ATPases, potentially phosphorylated by Cdc28p /NOTE=Yta7p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: ATPase activity [goid GO:0016887] [evidence ISS] [pmid 9605509]; go_process: protein catabolism [goid GO:0030163] [evidence ISS] [pmid 9605509] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 0.150000005960464 --- S0003502 // YTA7 SGDID:S0003502, Chr VII from 1027376-1031515, Verified ORF // sgd // 11 // --- /// GENSCAN00000019549 // cdna:Genscan chromosome:SGD1:VII:1027376:1031515:1 // ensembl // 11 // --- /// GENEFINDER00000021606 // cdna:GeneFinder chromosome:SGD1:VII:1027376:1031515:1 // ensembl // 11 // --- /// YGR270W // cdna:known chromosome:SGD1:VII:1027376:1031515:1 gene:YGR270W // ensembl // 11 // --- --- No cerevisiae_gene -1.16050596300545 -1.06186481813693 1.26837835675313 1.16952182705377 1.05199939622837 Max fold change below threshold 4 1.26837835675313 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771135_at YDR188W.S1 Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, essential protein that is required for the assembly of actin and tubulins in vivo; contains an ATP-binding motif 1.26806554146685 1774.54046630859 1961.15557861328 CCT6 6457 // protein folding // traceable author statement /// 7010 // cytoskeleton organization and biogenesis // traceable author statement 5737 // cytoplasm // traceable author statement /// 5832 // chaperonin-containing T-complex // traceable author statement /// 5832 // chaperonin-containing T-complex // inferred from physical interaction /// 5856 // cytoskeleton // traceable author statement 51082 // unfolded protein binding // traceable author statement 1978.31335449219 1560.10339355469 1988.9775390625 1943.99780273438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR188W /GEN=CCT6 /DB_XREF=GI:6320393 /SEG=NC_001136:+836414,838054 /DEF=Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo /NOTE=Cct6p; go_component: chaperonin-containing T-complex [goid GO:0005832] [evidence TAS] [pmid 8771707]; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 8771707]; go_component: cytoskeleton [goid GO:0005856] [evidence TAS] [pmid 8771707]; go_function: chaperone activity [goid GO:0003754] [evidence TAS] [pmid 8771707]; go_process: cytoskeleton organization and biogenesis [goid GO:0007010] [evidence TAS] [pmid 8771707]; go_process: protein folding [goid GO:0006457] [evidence TAS] [pmid 8771707] --- --- --- --- --- --- S0002596 // CCT6 SGDID:S0002596, Chr IV from 836416-838056, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023536 // cdna:GeneFinder chromosome:SGD1:IV:836416:838137:1 // ensembl // 11 // --- /// GENSCAN00000025240 // cdna:Genscan chromosome:SGD1:IV:836416:838137:1 // ensembl // 11 // --- /// YDR188W // cdna:known chromosome:SGD1:IV:836416:838056:1 gene:YDR188W // ensembl // 11 // --- --- No cerevisiae_gene 1.17553577633153 -1.26806554146685 1.01197771761341 1.00539054369021 -1.017652052749 Max fold change below threshold 4 1.26806554146685 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777395_at YMR047C.S1 Subunit of the nuclear pore complex (NPC) that is localized to both sides of the pore; contains a repetitive GLFG motif that interacts with mRNA export factor Mex67p and with karyopherin Kap95p; homologous to Nup100p 1.26780314521225 1011.20718383789 1207.88665771484 NUP116 6388 // tRNA splicing // inferred from mutant phenotype /// 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // inferred from mutant phenotype /// 6606 // protein-nucleus import // inferred from mutant phenotype /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6999 // nuclear pore organization and biogenesis // traceable author statement 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement 1184.32739257813 934.157165527344 1088.25720214844 1231.44592285156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR047C /GEN=NUP116 /DB_XREF=GI:6323691 /SEG=NC_001145:-363363,366704 /DEF=Subunit of the nuclear pore complex (NPC) that is localized to both sides of the pore; contains a repetitive GLFG motif that interacts with mRNA export factor Mex67p and with karyopherin Kap95p; homologous to Nup100p /NOTE=Nup116p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus import [goid GO:0006606] [evidence IMP] [pmid 9442897]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA splicing [goid GO:0006388] [evidence IMP] [pmid 8524308]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence IMP] [pmid 9442897] --- --- --- --- --- --- S0004650 // NUP116 SGDID:S0004650, Chr XIII from 366704-363363, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018754 // cdna:Genscan chromosome:SGD1:XIII:363363:366704:-1 // ensembl // 11 // --- /// GENEFINDER00000021928 // cdna:GeneFinder chromosome:SGD1:XIII:363363:366503:-1 // ensembl // 11 // --- /// YMR047C // cdna:known chromosome:SGD1:XIII:363363:366704:-1 gene:YMR047C // ensembl // 11 // --- --- No cerevisiae_gene -1.19160692978529 -1.26780314521225 -1.2151156371958 -1.08827893832453 1.03978505484946 Max fold change below threshold 4 1.26780314521225 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769622_at YJL047C-A.S1 --- 1.26753726104593 139.523178100586 172.633522033691 --- --- --- --- 152.265213012695 130.33268737793 148.713668823242 193.001831054688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL047C-A /GEN=MTR4 /DB_XREF=GI:33438823 /SEG=NC_001142:-348960,349094 /DEF=Yjl047c-ap /NOTE=go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0028804 // YJL047C-A SGDID:S0028804, Chr X from 349094-348960, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YJL047C-A // cdna:known chromosome:SGD1:X:348960:349094:-1 gene:YJL047C-A // ensembl // 11 // --- AF064272 // gb // 3 // Cross Hyb Matching Probes No cerevisiae_gene 1.17288359694245 -1.16828108186834 1.24066964409637 -1.02388176028173 1.26753726104593 Max fold change below threshold 4 1.26753726104593 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779859_at YKL160W.S1 Protein of unknown function; deletion inhibits Brome mosaic virus expression 1.26749072294567 1344.89831542969 1212.25347900391 ELF1 16049 // cell growth // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 1169.14831542969 1207.91198730469 1481.88464355469 1255.35864257813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL160W /GEN=PIR3 /DB_XREF=GI:6322689 /SEG=NC_001143:+153274,153711 /DEF=Ykl160wp /NOTE=Ykl161cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 9020587]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001643 // ELF1 SGDID:S0001643, Chr XI from 153274-153711, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023005 // cdna:GeneFinder chromosome:SGD1:XI:153274:153711:1 // ensembl // 11 // --- /// YKL160W // cdna:known chromosome:SGD1:XI:153274:153711:1 gene:YKL160W // ensembl // 11 // --- --- No cerevisiae_gene 1.19307183808827 1.03315547853375 1.09500877197287 1.26749072294567 1.07373771660164 Max fold change below threshold 4 1.26749072294567 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778764_at YNL156C.S1 Protein of unknown function, potential homolog of mammalian Insig 1 1.26666881330632 4157.41467285156 3832.50366210938 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 4283.3896484375 4503.66259765625 3811.16674804688 3381.61767578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL156C /GEN=ASI2 /DB_XREF=GI:6324173 /SEG=NC_001146:-341069,341968 /DEF=Protein of unknown function, potential homolog of mammalian Insig 1 /NOTE=Ynl156cp --- --- --- --- --- S0005100 // span:241-263,275-297 // numtm:2 S0005100 // NSG2 SGDID:S0005100, Chr XIV from 341968-341069, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YNL156C // cdna:known chromosome:SGD1:XIV:341069:341968:-1 gene:YNL156C // ensembl // 11 // --- --- No cerevisiae_gene -1.20504155783714 1.05142491514847 -1.21129668620808 -1.1239050746422 -1.26666881330632 Max fold change below threshold 4 1.26666881330632 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772448_at YPL221W.S1 Protein of unknown function, overproduction suppresses a pam1 slv3 double null mutation 1.2663821481575 1479.50762939453 1255.73321533203 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay /// 5935 // bud neck // inferred from direct assay --- 1237.0703125 1566.60375976563 1392.41149902344 1274.39611816406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL221W /GEN=GRE1 /DB_XREF=GI:6325035 /SEG=NC_001148:+133042,135423 /DEF=Protein of unknown function, overproduction suppresses a pam1 slv3 double null mutation /NOTE=Ypl221wp --- --- --- --- --- S0006142 // span:4-21,164-186,191-213,250-272,317-339,371-393,398-420,462-484,488-505,518-540,555-577 // numtm:11 S0006142 // BOP1 SGDID:S0006142, Chr XVI from 133042-135423, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017017 // cdna:Genscan chromosome:SGD1:XVI:133042:135423:1 // ensembl // 11 // --- /// GENEFINDER00000020992 // cdna:GeneFinder chromosome:SGD1:XVI:133042:135423:1 // ensembl // 11 // --- /// YPL221W // cdna:known chromosome:SGD1:XVI:133042:135423:1 gene:YPL221W // ensembl // 11 // --- --- No cerevisiae_gene 1.24707107107897 1.2663821481575 -1.04755927025782 1.12557183286495 1.03017274385045 Max fold change below threshold 4 1.2663821481575 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770050_at YOL036W.S1 Protein of unknown function; potential Cdc28p substrate 1.26611472668122 1999.63653564453 1732.98870849609 --- --- --- --- 1755.099609375 1965.52746582031 2033.74560546875 1710.87780761719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL036W /GEN=PRE6 /DB_XREF=GI:6324536 /SEG=NC_001147:+256743,259028 /DEF=Protein of unknown function; potential Cdc28p substrate /NOTE=Yol036wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005396 // YOL036W SGDID:S0005396, Chr XV from 256743-259028, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017438 // cdna:Genscan chromosome:SGD1:XV:256830:259028:1 // ensembl // 11 // --- /// GENEFINDER00000022879 // cdna:GeneFinder chromosome:SGD1:XV:256830:259028:1 // ensembl // 11 // --- /// YOL036W // cdna:known chromosome:SGD1:XV:256743:259028:1 gene:YOL036W // ensembl // 11 // --- YOL035C // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene -1.26611472668122 1.11989510756045 -1.24219531419486 1.15876363632317 -1.02584743431759 Max fold change below threshold 4 1.26611472668122 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779219_at YLR025W.S1 One of four subunits of the endosomal sorting complex required for transport III (ESCRT-III); involved in the sorting of transmembrane proteins into the multivesicular body (MVB) pathway; recruited from the cytoplasm to endosomal membranes 1.26579168754869 1132.65020751953 1286.94598388672 SNF7 43162 // ubiquitin-dependent protein catabolism via the multivesicular body pathway // inferred from curator /// 45324 // late endosome to vacuole transport // inferred from mutant phenotype 815 // ESCRT III complex // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1307.54504394531 1032.98596191406 1232.314453125 1266.34692382813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR025W /GEN=SNF7 /DB_XREF=GI:6323053 /SEG=NC_001144:+194453,195175 /DEF=Involved in derepression of SUC2 in response to glucose limitation /NOTE=Snf7p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9606181]; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 9606181]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: late endosome to vacuole transport [goid GO:0045324] [evidence IMP] [pmid 9606181] --- --- --- --- --- --- S0004015 // SNF7 SGDID:S0004015, Chr XII from 194453-195175, Verified ORF // sgd // 11 // --- /// GENSCAN00000017840 // cdna:Genscan chromosome:SGD1:XII:194453:195175:1 // ensembl // 11 // --- /// GENEFINDER00000024747 // cdna:GeneFinder chromosome:SGD1:XII:194636:195175:1 // ensembl // 10 // --- /// YLR025W // cdna:known chromosome:SGD1:XII:194453:195175:1 gene:YLR025W // ensembl // 11 // --- --- No cerevisiae_gene -1.24998558796325 -1.26579168754869 1.06856558273519 -1.06104820943188 -1.03253304394079 Max fold change below threshold 4 1.26579168754869 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774308_at YDR457W.S1 Temperature dependent Organization in Mitotic nucleus; hect-domain-containing protein, containing kinase motifs; similar to Rsp5 1.26572558235546 1382.58093261719 1293.27307128906 TOM1 209 // protein polyubiquitination // traceable author statement /// 6513 // protein monoubiquitination // traceable author statement /// 6913 // nucleocytoplasmic transport // inferred from mutant phenotype /// 6997 // nuclear organization and biogenesis // inferred from mutant phenotype /// 7067 // mitosis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5730 // nucleolus // inferred from direct assay 4842 // ubiquitin-protein ligase activity // traceable author statement 1240.62854003906 1364.76025390625 1400.40161132813 1345.91760253906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR457W /GEN=TOM1 /DB_XREF=GI:6320665 /SEG=NC_001136:+1369778,1379584 /DEF=Temperature dependent Organization in Mitotic nucleus /NOTE=Tom1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 8982460]; go_process: mitosis [goid GO:0007067] [evidence IMP] [pmid 10395901]; go_process: nuclear organization and biogenesis [goid GO:0006997] [evidence IMP] [pmid 10395901]; go_process: nucleocytoplasmic transport [goid GO:0006913] [evidence IMP] [pmid 10395901]; go_process: protein monoubiquitination [goid GO:0006513] [evidence TAS] [pmid 8982460]; go_process: protein polyubiquitination [goid GO:0000209] [evidence TAS] [pmid 8982460] --- --- --- --- scop // a.4.5.Thanscriptional regulator IclR, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Thanscriptional regulator IclR, N-terminal domain // 8.5 --- S0002865 // TOM1 SGDID:S0002865, Chr IV from 1369780-1379586, Verified ORF // sgd // 11 // --- /// GENSCAN00000025457 // cdna:Genscan chromosome:SGD1:IV:1369780:1379586:1 // ensembl // 11 // --- /// GENEFINDER00000023877 // cdna:GeneFinder chromosome:SGD1:IV:1370326:1379586:1 // ensembl // 11 // --- /// YDR457W // cdna:known chromosome:SGD1:IV:1369780:1379586:1 gene:YDR457W // ensembl // 11 // --- --- No cerevisiae_gene -1.26572558235546 1.10005550401354 1.09065111098058 1.12878397210178 1.08486751602271 Max fold change below threshold 4 1.26572558235546 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777758_at YBR290W.S1 Heavy metal ion homeostasis protein, facilitates trafficking of Smf1p and Smf2p metal transporters to the vacuole where they are degraded, controls metal ion transport, prevents metal hyperaccumulation, functions in copper detoxification 1.26553265781051 1142.3525390625 969.973205566406 BSD2 6623 // protein-vacuolar targeting // inferred from mutant phenotype /// 30001 // metal ion transport // inferred from mutant phenotype 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay 5515 // protein binding // inferred from direct assay 962.729675292969 1218.36584472656 1066.33923339844 977.216735839844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR290W /GEN=BSD2 /DB_XREF=GI:6319767 /SEG=NC_001134:+782549,783514 /DEF=metal homeostasis protein; putative membrane protein /NOTE=Bsd2p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 9115231]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: metal ion transport [goid GO:0030001] [evidence IMP] [pmid 9115231]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 9988727] --- --- --- --- --- S0000494 // span:180-202,209-226,279-301 // numtm:3 S0000494 // BSD2 SGDID:S0000494, Chr II from 782587-783552, Verified ORF // sgd // 11 // --- /// GENSCAN00000021370 // cdna:Genscan chromosome:SGD1:II:782587:783552:1 // ensembl // 11 // --- /// GENEFINDER00000022344 // cdna:GeneFinder chromosome:SGD1:II:782587:783552:1 // ensembl // 11 // --- /// YBR290W // cdna:known chromosome:SGD1:II:782587:783552:1 gene:YBR290W // ensembl // 11 // --- --- No cerevisiae_gene 1.22054085739357 1.26553265781051 1.18021362977572 1.10762061330865 1.01504790069182 Max fold change below threshold 4 1.26553265781051 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772192_at YKR071C.S1 Protein of unknown function; mutation displays synthetic lethal interaction with the pol3-13 allele of CDC2 1.26505337971697 1528.53686523438 1288.20336914063 DRE2 --- 5737 // cytoplasm // inferred from direct assay --- 1304.12170410156 1440.912109375 1616.16162109375 1272.28503417969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR071C /GEN=DRE2 /DB_XREF=GI:6322924 /SEG=NC_001143:-574576,575622 /DEF=Protein of unknown function; mutation displays synthetic lethal interaction with the pol3-13 allele of CDC2 /NOTE=Dre2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001779 // DRE2 SGDID:S0001779, Chr XI from 575622-574576, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018476 // cdna:Genscan chromosome:SGD1:XI:574576:575058:-1 // ensembl // 9 // --- /// GENEFINDER00000023150 // cdna:GeneFinder chromosome:SGD1:XI:574576:575058:-1 // ensembl // 9 // --- /// YKR071C // cdna:known chromosome:SGD1:XI:574576:575622:-1 gene:YKR071C // ensembl // 11 // --- --- No cerevisiae_gene 1.26505337971697 1.1048908279367 -1.09467660855505 1.23927208328088 -1.02502322126457 Max fold change below threshold 4 1.26505337971697 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776473_at YGR009C.S1 t-SNARE protein important for fusion of secretory vesicles with the plasma membrane; similar to but not functionally redundant with Spo20p; SNAP-25 homolog 1.26485771665663 1450.04943847656 1232.57446289063 SEC9 6893 // Golgi to plasma membrane transport // traceable author statement /// 6906 // vesicle fusion // traceable author statement 16020 // membrane // traceable author statement 5486 // t-SNARE activity // traceable author statement 1172.68566894531 1483.28051757813 1416.818359375 1292.46325683594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR009C /GEN=SEC9 /DB_XREF=GI:6321446 /SEG=NC_001139:-509049,511004 /DEF=Putative t-SNARE of the plasma membrane /NOTE=Sec9p; go_component: membrane [goid GO:0016020] [evidence TAS] [pmid 9731774]; go_function: v-SNARE activity [goid GO:0005485] [evidence TAS] [pmid 10047442]; go_process: Golgi to plasma membrane transport [goid GO:0006893] [evidence TAS] [pmid 10047442]; go_process: vesicle fusion [goid GO:0006906] [evidence TAS] [pmid 10047442] --- --- --- --- --- --- S0003241 // SEC9 SGDID:S0003241, Chr VII from 511006-509051, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019348 // cdna:Genscan chromosome:SGD1:VII:509051:511006:-1 // ensembl // 11 // --- /// GENEFINDER00000021542 // cdna:GeneFinder chromosome:SGD1:VII:509051:511006:-1 // ensembl // 11 // --- /// YGR009C // cdna:known chromosome:SGD1:VII:509051:511006:-1 gene:YGR009C // ensembl // 11 // --- --- No cerevisiae_gene 1.02683091831994 1.26485771665663 1.01593356096059 1.20818254788536 1.1021395511709 Max fold change below threshold 4 1.26485771665663 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771222_at YGL096W.S1 Homeodomain-containing transcription factor; SBF regulated target gene that in turn regulates expression of genes involved in G1/S phase events such as bud site selection, bud emergence and cell cycle progression; similarity to Cup9p 1.26434257560675 875.925231933594 810.9541015625 TOS8 83 // G1/S-specific transcription in mitotic cell cycle // inferred from physical interaction 5634 // nucleus // inferred from curator 3700 // transcription factor activity // inferred from physical interaction /// 3700 // transcription factor activity // non-traceable author statement 769.331481933594 779.151916503906 972.698547363281 852.576721191406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL096W /GEN=TOS8 /DB_XREF=GI:6321342 /SEG=NC_001139:+325332,326162 /DEF=Target of SBF /NOTE=Tos8p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: transcription factor activity [goid GO:0003700] [evidence TAS] [pmid 12464632]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 1.00000001954148E-25 --- S0003064 // TOS8 SGDID:S0003064, Chr VII from 325334-326164, Verified ORF // sgd // 11 // --- /// YGL096W // cdna:known chromosome:SGD1:VII:325334:326164:1 gene:YGL096W // ensembl // 11 // --- --- No cerevisiae_gene 1.1095884107605 1.01276489367838 -1.10382560701434 1.26434257560675 1.10820464417833 Max fold change below threshold 4 1.26434257560675 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778555_at YOR270C.S1 Subunit of vacuolar-ATPase V0 domain, one of two isoforms (Vph1p and Stv1p); Vph1p is located in V-ATPase complexes of the vacuole while Stv1p is located in V-ATPase complexes of the Golgi and endosomes 1.26405108563837 3856.07751464844 4138.27746582031 VPH1 6797 // polyphosphate metabolism // inferred from mutant phenotype /// 7035 // vacuolar acidification // traceable author statement 220 // hydrogen-transporting ATPase V0 domain // traceable author statement /// 5773 // vacuole // inferred from direct assay 46961 // hydrogen-transporting ATPase activity, rotational mechanism // traceable author statement 4546.763671875 4115.17724609375 3596.97778320313 3729.79125976563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR270C /GEN=VPH1 /DB_XREF=GI:6324844 /SEG=NC_001147:-828049,830571 /DEF=vacuolar ATPase V0 domain subunit a (100 kDa) /NOTE=Vph1p; go_component: hydrogen-transporting ATPase V0 domain [goid GO:0000220] [evidence TAS] [pmid 9442887]; go_component: vacuole [goid GO:0005773] [evidence IDA] [pmid 11948198]; go_function: hydrogen-transporting ATPase activity, rotational mechanism [goid GO:0046961] [evidence TAS] [pmid 9442887]; go_process: polyphosphate metabolism [goid GO:0006797] [evidence IMP] [pmid 9933515]; go_process: vacuolar acidification [goid GO:0007035] [evidence TAS] [pmid 9442887] --- --- --- --- --- S0005796 // span:419-441,461-483,540-562,569-591,633-651,733-755,765-787 // numtm:7 S0005796 // VPH1 SGDID:S0005796, Chr XV from 830571-828049, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017703 // cdna:Genscan chromosome:SGD1:XV:828049:830571:-1 // ensembl // 11 // --- /// GENEFINDER00000022907 // cdna:GeneFinder chromosome:SGD1:XV:828049:830571:-1 // ensembl // 11 // --- /// YOR270C // cdna:known chromosome:SGD1:XV:828049:830571:-1 gene:YOR270C // ensembl // 11 // --- --- No cerevisiae_gene -1.18820501555506 -1.10487675256052 -1.24103959335766 -1.26405108563837 -1.21903971434603 Max fold change below threshold 4 1.26405108563837 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773359_at YKL100C.S1 Hypothetical protein 1.26386220574749 1438.58343505859 1774.00048828125 --- --- --- --- 1782.27990722656 1466.98156738281 1410.18530273438 1765.72106933594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL100C /GEN=HSL1 /DB_XREF=GI:6322749 /SEG=NC_001143:-253343,255106 /DEF=Hypothetical ORF /NOTE=Ykl100cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0001583 // span:78-100,157-176,302-324,358-380,401-423,450-472,479-496 // numtm:7 S0001583 // YKL100C SGDID:S0001583, Chr XI from 255106-253343, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023179 // cdna:GeneFinder chromosome:SGD1:XI:253343:255106:-1 // ensembl // 11 // --- /// YKL100C // cdna:known chromosome:SGD1:XI:253343:255106:-1 gene:YKL100C // ensembl // 11 // --- YKL100W-A // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene -1.11718131348279 -1.21492999425089 1.04514590898889 -1.26386220574749 -1.00937794659541 Max fold change below threshold 4 1.26386220574749 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773284_at YJR004C.S1 Alpha-agglutinin of alpha-cells, binds to Aga1p during agglutination, N-terminal half is homologous to the immunoglobulin superfamily and contains binding site for a-agglutinin, C-terminal half is highly glycosylated and contains GPI anchor 1.26377674096116 315.639877319336 363.474731445313 SAG1 752 // agglutination during conjugation with cellular fusion // inferred from mutant phenotype 9277 // cell wall (sensu Fungi) // inferred from direct assay 50839 // cell adhesion molecule binding // inferred from mutant phenotype /// 50839 // cell adhesion molecule binding // traceable author statement 344.427795410156 297.522979736328 333.756774902344 382.521667480469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR004C /GEN=SAG1 /DB_XREF=GI:6322463 /SEG=NC_001142:-442823,444775 /DEF=Alpha-agglutinin of alpha-cells, binds to Aga1p during agglutination, N-terminal half is homologous to the immunoglobulin superfamily and contains binding site for a-agglutinin, C-terminal half is highly glycosylated and contains GPI anchor /NOTE=Sag1p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence IDA] [pmid 10383953]; go_function: cell adhesion molecule binding [goid GO:0050839] [evidence TAS] [pmid 11292808]; go_function: cell adhesion molecule binding [goid GO:0050839] [evidence IMP] [pmid 2677666]; go_process: agglutination during conjugation with cellular fusion [goid GO:0000752] [evidence IMP] [pmid 2677666] --- --- --- --- --- S0003764 // span:630-649 // numtm:1 S0003764 // SAG1 SGDID:S0003764, Chr X from 444775-442823, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024136 // cdna:Genscan chromosome:SGD1:X:442823:444775:-1 // ensembl // 11 // --- /// GENEFINDER00000024479 // cdna:GeneFinder chromosome:SGD1:X:442823:444775:-1 // ensembl // 11 // --- /// YJR004C // cdna:known chromosome:SGD1:X:442823:444775:-1 gene:YJR004C // ensembl // 11 // --- --- No cerevisiae_gene -1.26377674096116 -1.15765106855073 -1.21392026350808 -1.03197244613517 1.11060045843556 Max fold change below threshold 4 1.26377674096116 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779318_at YDR212W.S1 Alpha subunit of chaperonin-containing T-complex, which mediates protein folding in the cytosol; involved in maintenance of actin cytoskeleton; homolog to Drosophila melanogaster and mouse tailless complex polypeptide 1.26369334206678 940.457855224609 1058.73300170898 TCP1 6457 // protein folding // traceable author statement /// 7010 // cytoskeleton organization and biogenesis // traceable author statement 5737 // cytoplasm // traceable author statement /// 5832 // chaperonin-containing T-complex // traceable author statement /// 5832 // chaperonin-containing T-complex // inferred from physical interaction /// 5856 // cytoskeleton // traceable author statement 51082 // unfolded protein binding // traceable author statement 1014.44903564453 845.485900878906 1035.42980957031 1103.01696777344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR212W /GEN=TCP1 /DB_XREF=GI:6320418 /SEG=NC_001136:+887225,888904 /DEF=tailless complex polypeptide 1 /NOTE=Tcp1p; go_component: chaperonin-containing T-complex [goid GO:0005832] [evidence TAS] [pmid 8771707]; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 8771707]; go_component: cytoskeleton [goid GO:0005856] [evidence TAS] [pmid 8771707]; go_function: chaperone activity [goid GO:0003754] [evidence TAS] [pmid 8771707]; go_process: cytoskeleton organization and biogenesis [goid GO:0007010] [evidence TAS] [pmid 8771707]; go_process: protein folding [goid GO:0006457] [evidence TAS] [pmid 8771707] --- --- --- --- --- --- S0002620 // TCP1 SGDID:S0002620, Chr IV from 887227-888906, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023878 // cdna:GeneFinder chromosome:SGD1:IV:887227:888906:1 // ensembl // 11 // --- /// GENSCAN00000025262 // cdna:Genscan chromosome:SGD1:IV:887227:888906:1 // ensembl // 11 // --- /// YDR212W // cdna:known chromosome:SGD1:IV:887227:888906:1 gene:YDR212W // ensembl // 11 // --- --- No cerevisiae_gene 1.06744329507008 -1.19984145754528 -1.26369334206678 1.02068193983984 1.08730643829006 Max fold change below threshold 4 1.26369334206678 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776842_at YHR132C.S1 Putative metalloprotease with similarity to the zinc carboxypeptidase family, required for normal cell wall assembly 1.26339434442059 1668.69036865234 1569.81402587891 ECM14 6508 // proteolysis and peptidolysis // inferred from sequence similarity /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 324 // vacuole (sensu Fungi) // inferred from direct assay 4222 // metalloendopeptidase activity // inferred from sequence similarity 1506.32067871094 1434.3037109375 1903.07702636719 1633.30737304688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR132C /GEN=ECM14 /DB_XREF=GI:6321924 /SEG=NC_001140:-368503,369795 /DEF=Non-essential protein of unknown function, similar to zinc carboxypeptidase family /NOTE=Ecm14p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584] --- --- --- --- --- S0001174 // span:7-26 // numtm:1 S0001174 // ECM14 SGDID:S0001174, Chr VIII from 369796-368504, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016664 // cdna:Genscan chromosome:SGD1:VIII:368504:369796:-1 // ensembl // 11 // --- /// GENEFINDER00000020285 // cdna:GeneFinder chromosome:SGD1:VIII:368504:369787:-1 // ensembl // 11 // --- /// YHR132C // cdna:known chromosome:SGD1:VIII:368504:369796:-1 gene:YHR132C // ensembl // 11 // --- --- No cerevisiae_gene -1.23617346769597 -1.05021040329483 1.04444431298162 1.26339434442059 1.08430256327929 Max fold change below threshold 4 1.26339434442059 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777799_at YJL062W-A.S1 Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 1.26315888926691 1590.25805664063 1353.68920898438 --- --- 5739 // mitochondrion // inferred from direct assay --- 1330.77844238281 1499.53149414063 1680.98461914063 1376.59997558594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL062W-A /GEN=MRPL8 /DB_XREF=GI:13129172 /SEG=NC_001142:+316639,316896 /DEF=Hypothetical ORF identified by homology. See FEBS Letters [2000] 487:31-36. /NOTE=Yjl062w-ap; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0007611 // span:27-49 // numtm:1 S0007611 // YJL062W-A SGDID:S0007611, Chr X from 316639-316896, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000024091 // cdna:Genscan chromosome:SGD1:X:316639:316896:1 // ensembl // 10 // --- /// YJL062W-A // cdna:known chromosome:SGD1:X:316639:316896:1 gene:YJL062W-A // ensembl // 10 // --- GENEFINDER00000024346 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 1.17640418219592 1.12680777384375 1.10651339323266 1.26315888926691 1.03443212765085 Max fold change below threshold 4 1.26315888926691 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773688_at YLR446W.S1 Hypothetical protein 1.26284579811928 318.089538574219 332.694396972656 --- --- --- --- 305.740051269531 250.076538085938 386.1025390625 359.648742675781 0.00292969006113708 0.014160200022161 0.00415039015933871 0.00415039015933871 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR446W /GEN=ECM7 /DB_XREF=GI:6323479 /SEG=NC_001144:+1025210,1026511 /DEF=Hypothetical ORF /NOTE=Ylr446wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004438 // YLR446W SGDID:S0004438, Chr XII from 1025210-1026511, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018159 // cdna:Genscan chromosome:SGD1:XII:1025210:1026511:1 // ensembl // 11 // --- /// YLR446W // cdna:known chromosome:SGD1:XII:1025210:1026511:1 gene:YLR446W // ensembl // 11 // --- --- No cerevisiae_gene 1.22995800764387 -1.2225859075371 1.00838509595757 1.26284579811928 1.17632198065776 Max fold change below threshold 4 1.26284579811928 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1777825_at YGR097W.S1 Component of the RNA polymerase II holoenzyme, phosphorylated in response to oxidative stress; has a role in destruction of Ssn8p, which relieves repression of stress-response genes 1.26268540232822 967.452941894531 1255.89825439453 ASK10 6350 // transcription // inferred from genetic interaction /// 6350 // transcription // inferred from physical interaction /// 6979 // response to oxidative stress // inferred from genetic interaction /// 6979 // response to oxidative stress // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 16591 // DNA-directed RNA polymerase II, holoenzyme // inferred from direct assay 30528 // transcription regulator activity // traceable author statement 1209.09094238281 957.55517578125 977.350708007813 1302.70556640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR097W /GEN=ASK10 /DB_XREF=GI:6321534 /SEG=NC_001139:+678697,682137 /DEF=Component of the RNA polymerase II holoenzyme, phosphorylated in response to oxidative stress; has a role in destruction of Ssn8p, which relieves repression of stress-response genes /NOTE=Ask10p; go_component: DNA-directed RNA polymerase II, holoenzyme [goid GO:0016591] [evidence IDA] [pmid 14555478]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: transcription regulator activity [goid GO:0030528] [evidence TAS] [pmid 8904339]; go_process: response to oxidative stress [goid GO:0006979] [evidence IGI,IMP] [pmid 14555478]; go_process: transcription [goid GO:0006350] [evidence IPI] [pmid 14555478]; go_process: transcription [goid GO:0006350] [evidence IGI] [pmid 8904339] --- --- --- --- --- --- S0003329 // ASK10 SGDID:S0003329, Chr VII from 678699-682139, Verified ORF // sgd // 11 // --- /// GENSCAN00000019415 // cdna:Genscan chromosome:SGD1:VII:678744:682139:1 // ensembl // 11 // --- /// GENEFINDER00000021495 // cdna:GeneFinder chromosome:SGD1:VII:678744:682139:1 // ensembl // 11 // --- /// YGR097W // cdna:known chromosome:SGD1:VII:678699:682139:1 gene:YGR097W // ensembl // 11 // --- --- No cerevisiae_gene -1.18379123415553 -1.26268540232822 -1.25895506025712 -1.23711062208915 1.07742562675968 Max fold change below threshold 4 1.26268540232822 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774427_at YCR003W.S1 Mitochondrial ribosomal protein of the large subunit 1.26262151162459 617.719543457031 677.111846923828 MRPL32 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement 3735 // structural constituent of ribosome // traceable author statement 641.561279296875 661.035034179688 574.404052734375 712.662414550781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR003W /GEN=MRPL32 /DB_XREF=GI:6319848 /SEG=NC_001135:+118617,119168 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl32p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0000596 // MRPL32 SGDID:S0000596, Chr III from 118617-119168, Verified ORF // sgd // 11 // --- /// YCR003W // cdna:known chromosome:SGD1:III:118617:119168:1 gene:YCR003W // ensembl // 11 // --- --- No cerevisiae_gene 1.26262151162459 1.03035369420074 1.19987023538388 -1.11691635224857 1.11082516596362 Max fold change below threshold 4 1.26262151162459 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776215_at YNL071W.S1 Dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase complex, which catalyzes the oxidative decarboxylation of pyruvate to acetyl-CoA 1.26238184689283 4399.7568359375 3414.29675292969 LAT1 6090 // pyruvate metabolism // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5967 // pyruvate dehydrogenase complex (sensu Eukaryota) // traceable author statement 4742 // dihydrolipoyllysine-residue acetyltransferase activity // inferred from direct assay 3555.64990234375 4488.587890625 4310.92578125 3272.94360351563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL071W /GEN=LAT1 /DB_XREF=GI:6324258 /SEG=NC_001146:+491522,492970 /DEF=Dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase complex /NOTE=Lat1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_component: pyruvate dehydrogenase complex (sensu Eukarya) [goid GO:0005967] [evidence TAS] [pmid 9123965]; go_function: dihydrolipoyllysine-residue acetyltransferase activity [goid GO:0004742] [evidence IDA] [pmid 2271545]; go_process: pyruvate metabolism [goid GO:0006090] [evidence TAS] [pmid 9123965] --- --- --- --- --- --- S0005015 // LAT1 SGDID:S0005015, Chr XIV from 491522-492970, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020515 // cdna:GeneFinder chromosome:SGD1:XIV:491522:492970:1 // ensembl // 11 // --- /// GENSCAN00000019976 // cdna:Genscan chromosome:SGD1:XIV:491636:492970:1 // ensembl // 11 // --- /// YNL071W // cdna:known chromosome:SGD1:XIV:491522:492970:1 gene:YNL071W // ensembl // 11 // --- --- No cerevisiae_gene -1.23386305048353 1.26238184689283 1.09944752595142 1.2124157044844 -1.08637677060016 Max fold change below threshold 4 1.26238184689283 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771337_at YDL046W.S1 Putative homolog of human NPC2/He1, which is a cholesterol-binding protein whose deficiency causes Niemann-Pick type C2 disease involving retention of cholesterol in lysosomes 1.26164314266834 2536.33471679688 2818.23071289063 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 2902.064453125 2339.69921875 2732.97021484375 2734.39697265625 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL046W /GEN=SIT4 /DB_XREF=GI:6320157 /SEG=NC_001136:+371237,371758 /DEF=Putative homolog of human NPC2/He1, which is a cholesterol-binding protein whose deficiency causes Niemann-Pick type C2 disease involving retention of cholesterol in lysosomes /NOTE=Ydl046wp --- --- --- --- --- S0002204 // span:7-29 // numtm:1 S0002204 // NPC2 SGDID:S0002204, Chr IV from 371237-371758, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023468 // cdna:GeneFinder chromosome:SGD1:IV:371237:371758:1 // ensembl // 11 // --- /// GENSCAN00000025066 // cdna:Genscan chromosome:SGD1:IV:371237:371758:1 // ensembl // 11 // --- /// YDL046W // cdna:known chromosome:SGD1:IV:371237:371758:1 gene:YDL046W // ensembl // 11 // --- --- No cerevisiae_gene -1.26164314266834 -1.24035791860265 1.02446130414973 -1.0618719652936 -1.06131790012402 Max fold change below threshold 4 1.26164314266834 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772606_at YOR370C.S1 Rab escort protein, forms a complex with the Ras-like small GTPase Ypt1p that is required for the prenylation of Ypt1p by protein geranylgeranyltransferase type II (Bet2p-Bet4p) 1.26130388555222 1025.53109741211 1184.34246826172 MRS6 6886 // intracellular protein transport // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 16020 // membrane // inferred from direct assay 5084 // Rab escort protein activity // traceable author statement 1153.20520019531 914.296081542969 1136.76611328125 1215.47973632813 0.000244141003349796 0.000244140625 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR370C /GEN=MRS6 /DB_XREF=GI:6324946 /SEG=NC_001147:-1029179,1030990 /DEF=Rab escort protein, forms a complex with the Ras-like small GTPase Ypt1p that is required for the prenylation of Ypt1p by protein geranylgeranyltransferase type II (Bet2p-Bet4p) /NOTE=Mrs6p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9202009]; go_component: membrane [goid GO:0016020] [evidence IDA] [pmid 9202009]; go_function: Rab escort protein activity [goid GO:0005084] [evidence TAS] [pmid 9202009]; go_process: intracellular protein transport [goid GO:0006886] [evidence TAS] [pmid 9202009] --- --- --- --- --- --- S0005897 // MRS6 SGDID:S0005897, Chr XV from 1030990-1029179, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017818 // cdna:Genscan chromosome:SGD1:XV:1029179:1030963:-1 // ensembl // 11 // --- /// GENEFINDER00000022645 // cdna:GeneFinder chromosome:SGD1:XV:1029179:1034178:-1 // ensembl // 11 // --- /// YOR370C // cdna:known chromosome:SGD1:XV:1029179:1030990:-1 gene:YOR370C // ensembl // 11 // --- --- No cerevisiae_gene 1.20992992844227 -1.26130388555222 1.03176502481143 -1.01446127459466 1.05400126198032 Max fold change below threshold 4 1.26130388555222 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771714_at YGL190C.S1 Non-essential regulatory subunit B of protein phosphatase 2A; has multiple roles in mitosis and protein biosynthesis; found in the nucleus of most cells but also at the bud neck (large-budded cells) and at the bud tip (small-budded cells) 1.26107736621345 732.273223876953 603.670288085938 CDC55 6412 // protein biosynthesis // inferred from mutant phenotype /// 6470 // protein amino acid dephosphorylation // traceable author statement /// 7015 // actin filament organization // traceable author statement /// 7094 // mitotic spindle checkpoint // inferred from mutant phenotype /// 7117 // budding cell bud growth // traceable author statement /// 7124 // pseudohyphal growth // inferred from mutant phenotype 159 // protein phosphatase type 2A complex // traceable author statement /// 5634 // nucleus // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 158 // protein phosphatase type 2A activity // traceable author statement 581.896179199219 730.730346679688 733.816101074219 625.444396972656 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL190C /GEN=CDC55 /DB_XREF=GI:6321248 /SEG=NC_001139:-145813,147393 /DEF=Non-essential regulatory subunit B of protein phosphatase 2A; has multiple roles in mitosis and protein biosynthesis; found in the nucleus of most cells but also at the bud neck (large-budded cells) and at the bud tip (small-budded cells) /NOTE=Cdc55p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 12388751]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 12388751]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12388751]; go_component: protein phosphatase type 2A complex [goid GO:0000159] [evidence TAS] [pmid 10329624]; go_function: protein phosphatase type 2A activity [goid GO:0000158] [evidence TAS] [pmid 10329624]; go_process: actin filament organization [goid GO:0007015] [evidence TAS] [pmid 9001215]; go_process: bud growth [goid GO:0007117] [evidence TAS] [pmid 9001215]; go_process: mitotic spindle checkpoint [goid GO:0007094] [evidence IMP] [pmid 9001215]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence TAS] [pmid 9001215]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP] [pmid 10329624]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 9055077] --- --- --- --- --- --- S0003158 // CDC55 SGDID:S0003158, Chr VII from 147395-145815, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000019207 // cdna:Genscan chromosome:SGD1:VII:145815:147395:-1 // ensembl // 10 // --- /// GENEFINDER00000021707 // cdna:GeneFinder chromosome:SGD1:VII:145815:147395:-1 // ensembl // 10 // --- /// YGL190C // cdna:known chromosome:SGD1:VII:145815:147395:-1 gene:YGL190C // ensembl // 10 // --- --- No cerevisiae_gene 1.07355733875741 1.25577443674796 1.10696704258234 1.26107736621345 1.07483846660304 Max fold change below threshold 4 1.26107736621345 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774551_at YHR117W.S1 Translocase of the Outer Mitochondrial membrane, 71.9 kDa; 71-kDa component of the protein translocase of the outer membrane of mitochondria 1.26077460153654 461.904312133789 537.007919311523 TOM71 --- 5741 // mitochondrial outer membrane // inferred from direct assay 8565 // protein transporter activity // inferred from physical interaction /// 8565 // protein transporter activity // inferred from sequence similarity 498.703033447266 395.552886962891 528.255737304688 575.312805175781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR117W /GEN=TOM71 /DB_XREF=GI:6321909 /SEG=NC_001140:+342351,344270 /DEF=Translocase of the Outer Mitochondrial membrane, 71.9 kDa /NOTE=Tom71p; go_component: mitochondrial outer membrane [goid GO:0005741] [evidence IDA] [pmid 8663394]; go_function: protein transporter activity [goid GO:0008565] [evidence IPI,ISS] [pmid 8663394]; go_process: biological_process unknown [goid GO:0000004] [evidence IMP] [pmid 8663394] --- --- --- --- --- --- S0001159 // TOM71 SGDID:S0001159, Chr VIII from 342351-344270, Verified ORF // sgd // 11 // --- /// GENSCAN00000016654 // cdna:Genscan chromosome:SGD1:VIII:342351:344270:1 // ensembl // 11 // --- /// GENEFINDER00000020148 // cdna:GeneFinder chromosome:SGD1:VIII:342351:344270:1 // ensembl // 11 // --- /// YHR117W // cdna:known chromosome:SGD1:VIII:342351:344270:1 gene:YHR117W // ensembl // 11 // --- --- No cerevisiae_gene -1.00796913307135 -1.26077460153654 1.05147207713661 1.05925912191297 1.15361801832035 Max fold change below threshold 4 1.26077460153654 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774668_at YBR103W.S1 WD40 repeat-containing subunit of the Set3C histone deacetylase complex, which represses early/middle sporulation genes; antagonizes telomeric silencing; binds specifically to the Sir4p N-terminus 1.26033462771841 820.842010498047 733.489166259766 SIF2 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from physical interaction /// 6348 // chromatin silencing at telomere // inferred from genetic interaction /// 6348 // chromatin silencing at telomere // inferred from physical interaction /// 16575 // histone deacetylation // inferred from direct assay /// 16575 // histone deacetylation // inferred from physical interaction /// 45835 // negative regulation of meiosis // inferred from physical interaction 118 // histone deacetylase complex // inferred from physical interaction /// 5634 // nucleus // inferred from physical interaction 3714 // transcription corepressor activity // inferred from direct assay /// 17136 // NAD-dependent histone deacetylase activity // inferred from direct assay /// 17136 // NAD-dependent histone deacetylase activity // inferred from physical interaction /// 45129 // NAD-independent histone deacetylase activity // inferred from direct assay /// 45129 // NAD-independent histone deacetylase activity // inferred from physical interaction 714.917663574219 746.684387207031 894.999633789063 752.060668945313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR103W /GEN=SIF2 /DB_XREF=GI:6319579 /SEG=NC_001134:+447666,449273 /DEF=Sir4p-Interacting Factor /NOTE=Sif2p; go_component: histone deacetylase complex [goid GO:0000118] [evidence IPI] [pmid 11711434]; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 9651685]; go_function: NAD-dependent histone deacetylase activity [goid GO:0017136] [evidence IDA,IPI] [pmid 11711434]; go_function: NAD-independent histone deacetylase activity [goid GO:0045129] [evidence IDA,IPI] [pmid 11711434]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IGI,IPI] [pmid 9651685]; go_process: histone deacetylation [goid GO:0016575] [evidence IDA,IPI] [pmid 11711434]; go_process: negative regulation of meiosis [goid GO:0045835] [evidence IPI] [pmid 11711434]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IPI] [pmid 11711434] --- --- --- --- --- --- S0000307 // SIF2 SGDID:S0000307, Chr II from 447703-449310, Verified ORF // sgd // 11 // --- /// GENSCAN00000021221 // cdna:Genscan chromosome:SGD1:II:447703:449310:1 // ensembl // 11 // --- /// GENEFINDER00000022252 // cdna:GeneFinder chromosome:SGD1:II:447757:449310:1 // ensembl // 11 // --- /// YBR103W // cdna:known chromosome:SGD1:II:447703:449310:1 gene:YBR103W // ensembl // 11 // --- --- No cerevisiae_gene -1.26033462771841 1.04443410094807 1.1096981860909 1.25189190222903 1.05195424209467 Max fold change below threshold 4 1.26033462771841 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777289_at YPR133C.S1 Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II, probable transcriptional elongation factor; metazoan homologs contain an acidic N terminus; mutations in the gene confer an Spt- phenotype 1.25980913405867 1334.39825439453 1556.39233398438 IWS1 6368 // RNA elongation from RNA polymerase II promoter // inferred from physical interaction 8023 // transcription elongation factor complex // inferred from physical interaction 16944 // RNA polymerase II transcription elongation factor activity // inferred from physical interaction 1547.32873535156 1228.22473144531 1440.57177734375 1565.45593261719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR133C /GEN=IWS1 /DB_XREF=GI:6325390 /SEG=NC_001148:-795972,797204 /DEF=Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II, probable transcriptional elongation factor; metazoan homologs contain an acidic N terminus; mutations in the gene confer an Spt- phenotype /NOTE=Iws1p; go_component: transcription elongation factor complex [goid GO:0008023] [evidence IPI] [pmid 12242279]; go_function: Pol II transcription elongation factor activity [goid GO:0016944] [evidence IPI] [pmid 12242279]; go_process: RNA elongation from Pol II promoter [goid GO:0006368] [evidence IPI] [pmid 12242279] --- --- --- --- --- --- S0006337 // IWS1 SGDID:S0006337, Chr XVI from 797206-795974, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017283 // cdna:Genscan chromosome:SGD1:XVI:795974:797206:-1 // ensembl // 11 // --- /// GENEFINDER00000020725 // cdna:GeneFinder chromosome:SGD1:XVI:795974:797206:-1 // ensembl // 11 // --- /// YPR133C // cdna:known chromosome:SGD1:XVI:795974:797206:-1 gene:YPR133C // ensembl // 11 // --- --- No cerevisiae_gene -1.00910121990451 -1.25980913405867 1.10312387062602 -1.07410735076642 1.01171515583694 Max fold change below threshold 4 1.25980913405867 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774093_at YJR001W.S1 Vacuolar transporter, imports large neutral amino acids into the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters 1.25939725273989 1745.09716796875 1735.35302734375 AVT1 15804 // neutral amino acid transport // inferred from genetic interaction /// 15804 // neutral amino acid transport // inferred from mutant phenotype 5773 // vacuole // inferred from mutant phenotype 15175 // neutral amino acid transporter activity // inferred from mutant phenotype /// 15175 // neutral amino acid transporter activity // inferred from sequence similarity /// 15175 // neutral amino acid transporter activity // inferred from genetic interaction 1693.92846679688 1671.88549804688 1818.30883789063 1776.77758789063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR001W /GEN=AVT1 /DB_XREF=GI:6322460 /SEG=NC_001142:+436717,438525 /DEF=Vacuolar transporter, imports large neutral amino acids into the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters /NOTE=Avt1p; go_component: vacuole [goid GO:0005773] [evidence IMP] [pmid 11274162]; go_function: neutral amino acid transporter activity [goid GO:0015175] [evidence IGI,IMP,ISS] [pmid 11274162]; go_process: neutral amino acid transport [goid GO:0015804] [evidence IGI,IMP] [pmid 11274162] --- --- --- --- --- S0003761 // span:209-231,238-260,286-308,320-342,347-369,389-408,428-450,521-539,544-566,579-601 // numtm:10 S0003761 // AVT1 SGDID:S0003761, Chr X from 436717-438525, Verified ORF // sgd // 11 // --- /// GENSCAN00000024133 // cdna:Genscan chromosome:SGD1:X:436717:438525:1 // ensembl // 11 // --- /// GENEFINDER00000024357 // cdna:GeneFinder chromosome:SGD1:X:436717:438525:1 // ensembl // 11 // --- /// YJR001W // cdna:known chromosome:SGD1:X:436717:438525:1 gene:YJR001W // ensembl // 11 // --- --- No cerevisiae_gene 1.25939725273989 -1.01318449665109 -1.09079902719455 1.07342716857988 1.04890945675552 Max fold change below threshold 4 1.25939725273989 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776678_at YOR276W.S1 Phosphoprotein of the mRNA cap-binding complex involved in translational control, repressor of cap-dependent translation initiation, competes with eIF4G for binding to eIF4E 1.25888775222192 2194.3740234375 1974.88928222656 CAF20 16478 // negative regulation of translation // inferred from genetic interaction /// 16478 // negative regulation of translation // inferred from mutant phenotype 5845 // mRNA cap complex // inferred from physical interaction 45182 // translation regulator activity // inferred from genetic interaction /// 45182 // translation regulator activity // inferred from physical interaction 1883.91552734375 2283.61206054688 2105.13598632813 2065.86303710938 0.000244141003349796 0.000244140625 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR276W /GEN=CAF20 /DB_XREF=GI:6324850 /SEG=NC_001147:+841330,841815 /DEF=binds to eIF-4E, the mRNA cap-binding protein, and represses cap-dependent translation initiation by interfering with the interaction of eIF4E and eIF4G /NOTE=Caf20p; go_component: mRNA cap complex [goid GO:0005845] [evidence IPI] [pmid 9707439]; go_function: translation regulator activity [goid GO:0045182] [evidence IGI,IPI] [pmid 9707439]; go_process: negative regulation of translation [goid GO:0016478] [evidence IGI,IMP] [pmid 9144215] --- --- --- --- --- --- S0005802 // CAF20 SGDID:S0005802, Chr XV from 841330-841815, Verified ORF // sgd // 11 // --- /// GENSCAN00000017715 // cdna:Genscan chromosome:SGD1:XV:841330:841815:1 // ensembl // 11 // --- /// GENEFINDER00000022772 // cdna:GeneFinder chromosome:SGD1:XV:841330:841815:1 // ensembl // 11 // --- /// YOR276W // cdna:known chromosome:SGD1:XV:841330:841815:1 gene:YOR276W // ensembl // 11 // --- YOR277C // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene 1.25888775222192 1.21216266196748 -1.14646725775002 1.11742589079686 1.09657944166009 Max fold change below threshold 4 1.25888775222192 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769635_at YMR184W.S1 Hypothetical protein 1.25881442383523 1657.97454833984 1918.17077636719 --- --- 5737 // cytoplasm // inferred from direct assay --- 1843.82983398438 1851.2138671875 1464.73522949219 1992.51171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR184W /GEN=SSO2 /DB_XREF=GI:6323838 /SEG=NC_001145:+628188,628784 /DEF=Hypothetical ORF /NOTE=Ymr184wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004796 // YMR184W SGDID:S0004796, Chr XIII from 628188-628784, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018869 // cdna:Genscan chromosome:SGD1:XIII:628188:628784:1 // ensembl // 11 // --- /// GENEFINDER00000021887 // cdna:GeneFinder chromosome:SGD1:XIII:628188:628784:1 // ensembl // 11 // --- /// YMR184W // cdna:known chromosome:SGD1:XIII:628188:628784:1 gene:YMR184W // ensembl // 11 // --- --- No cerevisiae_gene -1.14250637072515 1.00400472596062 -1.16270140866754 -1.25881442383523 1.08063753065777 Max fold change below threshold 4 1.25881442383523 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770333_at YPR029C.S1 Gamma-adaptin, large subunit of the clathrin-associated protein (AP-1) complex; binds clathrin; involved in vesicle mediated transport 1.25881194176413 1390.21203613281 1630.19512939453 APL4 16192 // vesicle-mediated transport // inferred from sequence similarity /// 16192 // vesicle-mediated transport // traceable author statement /// 16192 // vesicle-mediated transport // inferred from physical interaction 30121 // AP-1 adaptor complex // inferred from sequence similarity /// 30121 // AP-1 adaptor complex // inferred from physical interaction 30276 // clathrin binding // inferred from sequence similarity /// 30276 // clathrin binding // inferred from physical interaction 1648.10583496094 1463.96691894531 1316.45715332031 1612.28442382813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR029C /GEN=APL4 /DB_XREF=GI:6325286 /SEG=NC_001148:-624464,626962 /DEF=Gamma-adaptin, large subunit of the clathrin-associated protein (AP) complex /NOTE=Apl4p; go_component: AP-1 adaptor complex [goid GO:0030121] [evidence IPI,ISS] [pmid 10564262]; go_function: clathrin binding [goid GO:0030276] [evidence IPI,ISS] [pmid 10564262]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IPI,ISS] [pmid 10564262] --- --- --- --- scop // a.4.5.Transcription factor MotA, activation domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Transcription factor MotA, activation domain // 0.0989999994635582 --- S0006233 // APL4 SGDID:S0006233, Chr XVI from 626964-624466, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017208 // cdna:Genscan chromosome:SGD1:XVI:624466:626964:-1 // ensembl // 11 // --- /// GENEFINDER00000021050 // cdna:GeneFinder chromosome:SGD1:XVI:624466:625083:-1 // ensembl // 11 // --- /// YPR029C // cdna:known chromosome:SGD1:XVI:624466:626964:-1 gene:YPR029C // ensembl // 11 // --- --- No cerevisiae_gene -1.0884464966922 -1.12578079028472 -1.25881194176413 -1.25192516201849 -1.02221779892146 Max fold change below threshold 4 1.25881194176413 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779586_at YIL106W.S1 Component of the mitotic exit network; associates with and is required for the activation and Cdc15p-dependent phosphorylation of the Dbf2p kinase; required for cytokinesis and cell separation; component of the CCR4 transcriptional complex 1.258673915928 1802.95324707031 1845.53759765625 MOB1 6468 // protein amino acid phosphorylation // inferred from direct assay /// 7096 // regulation of exit from mitosis // traceable author statement 5816 // spindle pole body // inferred from direct assay /// 5935 // bud neck // inferred from direct assay 19207 // kinase regulator activity // inferred from direct assay 1867.55737304688 1892.154296875 1713.75219726563 1823.51782226563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL106W /GEN=MOB1 /DB_XREF=GI:6681848 /SEG=NC_001141:+166412,167441 /DEF=Mps One Binder /NOTE=Mob1p; go_component: bud neck [goid GO:0005935] [evidence TAS] [pmid 11434459]; go_function: kinase regulator activity [goid GO:0019207] [evidence IDA] [pmid 11404483]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 11404483]; go_process: regulation of exit from mitosis [goid GO:0007096] [evidence TAS] [pmid 11404483] --- --- --- --- --- --- S0001368 // MOB1 SGDID:S0001368, Chr IX from 166412-166431,166517-167441, intron sequence removed, Verified ORF // sgd // 11 // --- /// YIL106W // cdna:known chromosome:SGD1:IX:166412:167441:1 gene:YIL106W // ensembl // 11 // --- --- No cerevisiae_gene 1.258673915928 1.01317063892286 -1.13006148219693 -1.08974761696974 -1.02415087488782 Max fold change below threshold 4 1.258673915928 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774090_at YOR262W.S1 Protein required for cell viability 1.2582048466059 441.307113647461 506.802810668945 --- --- 5737 // cytoplasm // inferred from direct assay --- 473.809600830078 381.861480712891 500.752746582031 539.796020507813 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR262W /GEN=RPN8 /DB_XREF=GI:6324836 /SEG=NC_001147:+817289,818332 /DEF=Protein required for cell viability /NOTE=Yor262wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14690591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005788 // YOR262W SGDID:S0005788, Chr XV from 817289-818332, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017693 // cdna:Genscan chromosome:SGD1:XV:817289:818332:1 // ensembl // 11 // --- /// GENEFINDER00000022653 // cdna:GeneFinder chromosome:SGD1:XV:817784:818332:1 // ensembl // 9 // --- /// YOR262W // cdna:known chromosome:SGD1:XV:817289:818332:1 gene:YOR262W // ensembl // 11 // --- --- No cerevisiae_gene 1.2582048466059 -1.24078919912407 -1.02741744270496 1.05686492148903 1.13926779778656 Max fold change below threshold 4 1.2582048466059 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778139_at YNL133C.S1 Protein of unknown function, required for survival upon exposure to K1 killer toxin; proposed to regulate double-strand break repair via non-homologous end-joining 1.25816817633611 444.943908691406 395.958984375 FYV6 6303 // double-strand break repair via nonhomologous end-joining // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 390.232116699219 490.977630615234 398.910186767578 401.685852050781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL133C /GEN=FYV6 /DB_XREF=GI:6324196 /SEG=NC_001146:-374171,374692 /DEF=Protein of unknown function, required for survival upon exposure to K1 killer toxin; proposed to regulate double-strand break repair via non-homologous end-joining /NOTE=Fyv6p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: double-strand break repair via nonhomologous end-joining [goid GO:0006303] [evidence IMP] [pmid 12399380] --- --- --- --- --- --- S0005077 // FYV6 SGDID:S0005077, Chr XIV from 374692-374171, reverse complement, Verified ORF // sgd // 11 // --- /// YNL133C // cdna:known chromosome:SGD1:XIV:374171:374692:-1 gene:YNL133C // ensembl // 11 // --- --- No cerevisiae_gene -1.07100723942501 1.25816817633611 1.15435305791153 1.02223822616591 1.02935108326922 Max fold change below threshold 4 1.25816817633611 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773910_at YBR091C.S1 Essential protein of the inner mitochondrial membrane, peripherally localized; component of the TIM22 complex, which is a twin-pore translocase that mediates insertion of numerous multispanning inner membrane proteins 1.25781365644705 452.515991210938 558.826812744141 MRS5 45039 // mitochondrial inner membrane protein import // inferred from physical interaction /// 45039 // mitochondrial inner membrane protein import // inferred from mutant phenotype 5758 // mitochondrial intermembrane space // traceable author statement /// 42721 // mitochondrial inner membrane protein insertion complex // traceable author statement 8565 // protein transporter activity // inferred from mutant phenotype /// 8565 // protein transporter activity // inferred from physical interaction 498.506286621094 452.981781005859 452.050201416016 619.147338867188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR091C /GEN=MRS5 /DB_XREF=GI:6319567 /SEG=NC_001134:-427112,427441 /DEF=Involved in mitochondrial biogenesis, may share a common function with Mrs11p /NOTE=Mrs5p; go_component: mitochondrial inner membrane protein insertion complex [goid GO:0042721] [evidence TAS] [pmid 12581629]; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence TAS] [pmid 9495346]; go_function: protein transporter activity [goid GO:0008565] [evidence IMP] [pmid 9430585]; go_function: protein transporter activity [goid GO:0008565] [evidence IPI] [pmid 9495346]; go_process: mitochondrial inner membrane protein import [goid GO:0045039] [evidence IMP] [pmid 9430585]; go_process: mitochondrial inner membrane protein import [goid GO:0045039] [evidence IPI] [pmid 9495346] --- --- --- --- --- --- S0000295 // MRS5 SGDID:S0000295, Chr II from 427478-427149, reverse complement, Verified ORF // sgd // 11 // --- /// YBR091C // cdna:known chromosome:SGD1:II:427149:427478:-1 gene:YBR091C // ensembl // 11 // --- --- No cerevisiae_gene 1.1293370686133 -1.10049963933239 1.25781365644705 -1.10276753568422 1.24200507693455 Max fold change below threshold 4 1.25781365644705 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776223_at YOR362C.S1 20S proteasome alpha-type subunit 1.25752249351903 3610.0732421875 3020.93957519531 PRE10 6511 // ubiquitin-dependent protein catabolism // traceable author statement 19773 // proteasome core complex, alpha-subunit complex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement 3165.1171875 3577.59326171875 3642.55322265625 2876.76196289063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR362C /GEN=PRE10 /DB_XREF=GI:6324938 /SEG=NC_001147:-1017876,1018742 /DEF=20S proteasome alpha-type subunit /NOTE=Pre10p; go_component: proteasome core complex (sensu Eukarya) [goid GO:0005839] [evidence TAS] [pmid 10872471]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 10872471]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10872471] --- --- --- --- --- --- S0005889 // PRE10 SGDID:S0005889, Chr XV from 1018742-1017876, reverse complement, Verified ORF // sgd // 10 // --- /// M55436 // S.cerevisiae yeast proteasome subunit YC1 mRNA, complete cds. // gb // 10 // --- /// GENSCAN00000017813 // cdna:Genscan chromosome:SGD1:XV:1017876:1018742:-1 // ensembl // 10 // --- /// GENEFINDER00000022934 // cdna:GeneFinder chromosome:SGD1:XV:1017876:1018742:-1 // ensembl // 10 // --- /// YOR362C // cdna:known chromosome:SGD1:XV:1017876:1018742:-1 gene:YOR362C // ensembl // 10 // --- --- No cerevisiae_gene -1.25752249351903 1.13031936885236 1.05957767164032 1.15084308316981 -1.10023603910545 Max fold change below threshold 4 1.25752249351903 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779923_at YKL005C.S1 Negative regulator of transcription elongation, contains a TFIIS-like domain and a PHD finger, multicopy suppressor of temperature-sensitive ess1 mutations, probably binds RNA polymerase II large subunit 1.25716942604174 1115.64489746094 1009.20693969727 BYE1 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction 5634 // nucleus // traceable author statement 3711 // transcriptional elongation regulator activity // inferred from genetic interaction 992.145446777344 983.994873046875 1247.294921875 1026.26843261719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL005C /GEN=BYE1 /DB_XREF=GI:6322848 /SEG=NC_001143:-432736,434520 /DEF=Negative regulator of transcription elongation, may act by competing with Dst1p for binding to the large subunit of RNA polymerase II (Rpo21p); contains PHD finger and TFIIS-like domains, which are implicated in transcription regulation /NOTE=Bye1p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 14704159]; go_function: transcriptional elongation regulator activity [goid GO:0003711] [evidence IGI] [pmid 14704159]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IGI] [pmid 14704159] --- --- --- --- --- --- S0001488 // BYE1 SGDID:S0001488, Chr XI from 434520-432736, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018413 // cdna:Genscan chromosome:SGD1:XI:432736:434241:-1 // ensembl // 11 // --- /// GENEFINDER00000022972 // cdna:GeneFinder chromosome:SGD1:XI:432736:434520:-1 // ensembl // 11 // --- /// YKL005C // cdna:known chromosome:SGD1:XI:432736:434520:-1 gene:YKL005C // ensembl // 11 // --- --- No cerevisiae_gene -1.01004282114382 -1.00828314654245 1.01604164940308 1.25716942604174 1.03439312849813 Max fold change below threshold 4 1.25716942604174 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776167_at YER164W.S1 Sole S. cerevisiae member of CHD gene family containing Chromodomain, Helicase domain, and DNA-binding domain; transcriptional regulator 1.25694516663899 792.229949951172 811.740417480469 CHD1 6338 // chromatin remodeling // inferred from direct assay /// 6368 // RNA elongation from RNA polymerase II promoter // inferred from physical interaction 124 // SAGA complex // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 8023 // transcription elongation factor complex // inferred from physical interaction /// 46695 // SLIK (SAGA-like) complex // inferred from direct assay 16887 // ATPase activity // inferred from direct assay /// 16944 // RNA polymerase II transcription elongation factor activity // inferred from physical interaction 720.125061035156 679.302185058594 905.15771484375 903.355773925781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER164W /GEN=CHD1 /DB_XREF=GI:6321012 /SEG=NC_001137:+505387,509793 /DEF=Sole S. cerevisiae member of CHD gene family containing Chromodomain, Helicase domain, and DNA-binding domain /NOTE=Chd1p; go_component: transcription elongation factor complex [goid GO:0008023] [evidence IPI] [pmid 12242279]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 10811623]; go_function: Pol II transcription elongation factor activity [goid GO:0016944] [evidence IPI] [pmid 12242279]; go_process: RNA elongation from Pol II promoter [goid GO:0006368] [evidence IPI] [pmid 12242279]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 10811623] --- --- --- --- --- --- S0000966 // CHD1 SGDID:S0000966, Chr V from 505387-509793, Verified ORF // sgd // 11 // --- /// GENSCAN00000016943 // cdna:Genscan chromosome:SGD1:V:505387:509793:1 // ensembl // 11 // --- /// GENEFINDER00000019715 // cdna:GeneFinder chromosome:SGD1:V:505387:509793:1 // ensembl // 11 // --- /// YER164W // cdna:known chromosome:SGD1:V:505387:509793:1 gene:YER164W // ensembl // 11 // --- --- No cerevisiae_gene 1.16350733214285 -1.06009531085645 1.08801275142011 1.25694516663899 1.25444290555204 Max fold change below threshold 4 1.25694516663899 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777677_at YIL063C.S1 Ran-GTPase-binding protein involved in nuclear export; nuclear protein, interacts with Gsp1p and Crm1p 1.25688129457633 908.174774169922 1122.04248046875 YRB2 6406 // mRNA-nucleus export // traceable author statement /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // inferred from mutant phenotype /// 6999 // nuclear pore organization and biogenesis // traceable author statement 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement 1094.67932128906 945.400695800781 870.948852539063 1149.40563964844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL063C /GEN=YRB2 /DB_XREF=GI:6322126 /SEG=NC_001141:-242758,243741 /DEF=Ran-GTPase-binding protein involved in nuclear export /NOTE=Yrb2p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 9442897]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence TAS] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence IMP] [pmid 9442897]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0001325 // YRB2 SGDID:S0001325, Chr IX from 243741-242758, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000016430 // cdna:Genscan chromosome:SGD1:IX:242758:243741:-1 // ensembl // 10 // --- /// GENEFINDER00000019116 // cdna:GeneFinder chromosome:SGD1:IX:242758:243741:-1 // ensembl // 10 // --- /// YIL063C // cdna:known chromosome:SGD1:IX:242758:243741:-1 gene:YIL063C // ensembl // 10 // --- --- No cerevisiae_gene -1.20726203219859 -1.1578998472831 1.18225240094549 -1.25688129457633 1.04999301374847 Max fold change below threshold 4 1.25688129457633 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778527_at YBR287W.S1 Protein of unknown function; mutation results in a zinc sensitive phenotype 1.2562963434335 3151.66162109375 2461.52941894531 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 2532.13256835938 3122.21435546875 3181.10888671875 2390.92626953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR287W /GEN=APE3 /DB_XREF=GI:6319764 /SEG=NC_001134:+776529,777812 /DEF=Ybr287wp /NOTE=Ape3p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 8175799]; go_function: aminopeptidase activity [goid GO:0004177] [evidence IDA] [pmid 8175799]; go_function: aminopeptidase activity [goid GO:0004177] [evidence IMP] [pmid 8175800]; go_process: vacuolar protein catabolism [goid GO:0007039] [evidence IDA] [pmid 8175799] --- --- --- --- --- S0000491 // span:7-29,71-90,252-274,327-349,362-384,399-421 // numtm:6 S0000491 // ZSP1 SGDID:S0000491, Chr II from 776567-777850, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022334 // cdna:GeneFinder chromosome:SGD1:II:776768:777850:1 // ensembl // 11 // --- /// GENSCAN00000021367 // cdna:Genscan chromosome:SGD1:II:776849:777850:1 // ensembl // 11 // --- /// YBR287W // cdna:known chromosome:SGD1:II:776567:777850:1 gene:YBR287W // ensembl // 11 // --- --- No cerevisiae_gene 1.00721941568406 1.23303747776986 1.12351933618824 1.2562963434335 -1.05905924437219 Max fold change below threshold 4 1.2562963434335 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773677_at YJL012C.S1 Vacuolar membrane protein involved in vacuolar polyphosphate accumulation; functions as a regulator of vacuolar H+-ATPase activity and vacuolar transporter chaperones; involved in non-autophagic vacuolar fusion 1.25621156018884 1564.48443603516 1781.51263427734 VTC4 42144 // vacuole fusion, non-autophagic // inferred from mutant phenotype 31310 // intrinsic to vacuolar membrane // inferred from direct assay --- 1722.90856933594 1371.51147460938 1757.45739746094 1840.11669921875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL012C /GEN=VTC4 /DB_XREF=GI:42742256 /SEG=NC_001142:-411149,413314 /DEF=Phosphate metabolism; transcription is regulated by PHO system /NOTE=Vtc4p; go_component: vacuolar membrane [goid GO:0005774] [evidence IDA] [pmid 11823419]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: vacuole fusion, non-autophagic [goid GO:0042144] [evidence IMP] [pmid 11823419] --- --- --- --- --- S0003549 // span:631-653,658-677,697-719 // numtm:3 S0003549 // VTC4 SGDID:S0003549, Chr X from 413314-411149, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024126 // cdna:Genscan chromosome:SGD1:X:411149:413314:-1 // ensembl // 11 // --- /// GENEFINDER00000024320 // cdna:GeneFinder chromosome:SGD1:X:411149:413314:-1 // ensembl // 11 // --- /// YJL012C // cdna:known chromosome:SGD1:X:411149:413314:-1 gene:YJL012C // ensembl // 11 // --- --- No cerevisiae_gene -1.21688055521356 -1.25621156018884 1.03017847371704 1.02005261842671 1.06802922219372 Max fold change below threshold 4 1.25621156018884 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774066_at YCR030C.S1 Protein with a potential role in actin cytoskeletal organization; overexpression suppresses a pfy1 (profilin) null mutation 1.25594239036009 2358.69470214844 2454.36535644531 SYP1 --- 1400 // mating projection base // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay --- 2514.51318359375 2340.22509765625 2377.16430664063 2394.21752929688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCR030C /GEN=SYP1 /DB_XREF=GI:10383792 /SEG=NC_001135:-173821,176433 /DEF=Suppressor of Yeast Profilin deletion /NOTE=Syp1p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 11014808]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 11014808]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 11014808]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000626 // SYP1 SGDID:S0000626, Chr III from 176433-173821, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022480 // cdna:Genscan chromosome:SGD1:III:173821:176433:-1 // ensembl // 11 // --- /// GENEFINDER00000023358 // cdna:GeneFinder chromosome:SGD1:III:173821:176433:-1 // ensembl // 11 // --- /// YCR030C // cdna:known chromosome:SGD1:III:173821:176433:-1 gene:YCR030C // ensembl // 11 // --- --- No cerevisiae_gene -1.25594239036009 -1.07447492384901 -1.24673867998739 -1.05777845333174 -1.05024424590701 Max fold change below threshold 4 1.25594239036009 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780134_at YDR379W.S1 GTPase-activating protein for the polarity-establishment protein Cdc42p; implicated in control of septin organization, pheromone response, and haploid invasive growth 1.25497648619425 1171.47332763672 1444.89221191406 RGA2 750 // signal transduction during conjugation with cellular fusion // traceable author statement /// 1403 // invasive growth (sensu Saccharomyces) // inferred from sequence similarity /// 7015 // actin filament organization // inferred from sequence similarity /// 7118 // budding cell apical bud growth // inferred from sequence similarity /// 7119 // budding cell isotropic bud growth // inferred from sequence similarity /// 7124 // pseudohyphal growth // inferred from sequence similarity /// 7264 // small GTPase mediated signal transduction // inferred from sequence similarity /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from sequence similarity 5622 // intracellular // traceable author statement 4871 // signal transducer activity // inferred from sequence similarity /// 5100 // Rho GTPase activator activity // inferred from sequence similarity 1370.48901367188 1248.99230957031 1093.95434570313 1519.29541015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR379W /GEN=RGA2 /DB_XREF=GI:6320587 /SEG=NC_001136:+1230155,1233184 /DEF=contains a Rho-GAP domain and two LIM domains, similar to Rga1p and all known Rho-GAPs /NOTE=Rga2p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 9891811]; go_function: Rho GTPase activator activity [goid GO:0005100] [evidence ISS] [pmid 9891811]; go_function: signal transducer activity [goid GO:0004871] [evidence ISS] [pmid 9891811]; go_process: actin filament organization [goid GO:0007015] [evidence ISS] [pmid 7498791]; go_process: apical bud growth [goid GO:0007118] [evidence ISS] [pmid 10066831]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence ISS] [pmid 9891811]; go_process: invasive growth (sensu Saccharomyces) [goid GO:0001403] [evidence ISS] [pmid 10066831]; go_process: isotropic bud growth [goid GO:0007119] [evidence ISS] [pmid 10066831]; go_process: pseudohyphal growth [goid GO:0007124] [evidence ISS] [pmid 10066831]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence TAS] [pmid 10066831]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence ISS] [pmid 9891811] --- --- --- --- --- --- S0002787 // RGA2 SGDID:S0002787, Chr IV from 1230157-1233186, Verified ORF // sgd // 11 // --- /// GENSCAN00000025400 // cdna:Genscan chromosome:SGD1:IV:1230514:1233186:1 // ensembl // 11 // --- /// YDR379W // cdna:known chromosome:SGD1:IV:1230157:1233186:1 gene:YDR379W // ensembl // 11 // --- --- No cerevisiae_gene -1.25497648619425 -1.09727578238121 1.08108579941687 -1.25278446861602 1.108579050981 Max fold change below threshold 4 1.25497648619425 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779260_at SPAC1F5.02.S1 --- 1.25434757095037 --- --- --- --- 15.9835729598999 14.0433835983276 18.025203704834 13.2085494995117 0.171387001872063 0.0676269978284836 0.0375977009534836 0.00195312988944352 A A P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC1F5.02 /DEF=protein disulfide isomerase (predicted) --- --- --- --- --- --- SPAC1F5.02 // |||thioredoxin family|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.21678203233055 -1.13815683008213 1.25434757095037 1.12773306381847 -1.2100929750455 Max fold change below threshold 4 1.25434757095037 Max fold change below threshold AAAPPP No 3 0 AAPP 2 2 0 No No 1 < x = 2
1772687_at YIL105C.S1 Phosphoinositide PI4,5P(2) binding protein, forms a complex with Slm2p; acts downstream of Mss4p in a pathway regulating actin cytoskeleton organization in response to stress; phosphorylated by the Tor2p-containing complex TORC2 1.25424657952065 2665.97839355469 2544.27563476563 SLM1 30036 // actin cytoskeleton organization and biogenesis // inferred from genetic interaction /// 45011 // actin cable formation // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 35091 // phosphoinositide binding // traceable author statement /// 35091 // phosphoinositide binding // inferred from physical interaction /// 35091 // phosphoinositide binding // inferred from mutant phenotype 2610.27514648438 3108.90600585938 2223.05078125 2478.27612304688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL105C /GEN=MOB1 /DB_XREF=GI:6322086 /SEG=NC_001141:-167578,169638 /DEF=Hypothetical ORF /NOTE=Yil105cp --- --- --- --- --- --- S0001367 // SLM1 SGDID:S0001367, Chr IX from 169638-167578, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016398 // cdna:Genscan chromosome:SGD1:IX:167578:169332:-1 // ensembl // 11 // --- /// GENEFINDER00000019079 // cdna:GeneFinder chromosome:SGD1:IX:167578:169620:-1 // ensembl // 11 // --- /// YIL105C // cdna:known chromosome:SGD1:IX:167578:169638:-1 gene:YIL105C // ensembl // 11 // --- YIL105W-A // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene -1.25424657952065 1.19102616827447 1.0298224218498 -1.17418601882618 -1.05326243601751 Max fold change below threshold 4 1.25424657952065 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771464_at YAL035W.S1 GTPase, required for general translation initiation by promoting Met-tRNAiMet binding to ribosomes and ribosomal subunit joining; homolog of bacterial IF2 1.25421724589536 3531.14477539063 2900.33386230469 FUN12 6413 // translational initiation // inferred from direct assay 5739 // mitochondrion // inferred from direct assay /// 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // inferred from direct assay 3743 // translation initiation factor activity // inferred from direct assay /// 3924 // GTPase activity // inferred from mutant phenotype /// 3924 // GTPase activity // inferred from sequence similarity 3010.43383789063 3584.53393554688 3477.75561523438 2790.23388671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL035W /GEN=FUN12 /DB_XREF=GI:6319282 /SEG=NC_001133:+76430,79438 /DEF=GTPase, required for general translation initiation by promoting Met-tRNAiMet binding to ribosomes and ribosomal subunit joining; homolog of bacterial IF2 /NOTE=Fun12p; go_component: cytosolic small ribosomal subunit (sensu Eukarya) [goid GO:0005843] [evidence IDA] [pmid 9624054]; go_function: GTPase activity [goid GO:0003924] [evidence IMP,ISS] [pmid 12471154]; go_function: translation initiation factor activity [goid GO:0003743] [evidence IDA] [pmid 9624054]; go_process: translational initiation [goid GO:0006413] [evidence IDA] [pmid 9624054] --- --- --- --- --- --- S0000033 // FUN12 SGDID:S0000033, Chr I from 76428-79436, Verified ORF // sgd // 10 // --- /// GENEFINDER00000018213 // cdna:GeneFinder chromosome:SGD1:I:76428:79436:1 // ensembl // 10 // --- /// GENSCAN00000020347 // cdna:Genscan chromosome:SGD1:I:77802:79436:1 // ensembl // 10 // --- /// YAL035W // cdna:known chromosome:SGD1:I:76428:79436:1 gene:YAL035W // ensembl // 10 // --- --- No cerevisiae_gene 1.25421724589536 1.19070344294911 -1.12491277429514 1.15523403021247 -1.07891809794871 Max fold change below threshold 4 1.25421724589536 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sc-SPT15-3_at AFFX-r2-Sc-SPT15-3 TATA-binding protein, general transcription factor that interacts with other factors to form the preinitiation complex at promoters, essential for viability 1.25399918575571 2086.68286132813 1808.62084960938 SPT15 6360 // transcription from RNA polymerase I promoter // traceable author statement /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 6384 // transcription initiation from RNA polymerase III promoter // traceable author statement 120 // RNA polymerase I transcription factor complex // traceable author statement /// 126 // transcription factor TFIIIB complex // traceable author statement /// 5634 // nucleus // inferred from direct assay /// 5669 // transcription factor TFIID complex // traceable author statement /// 5669 // transcription factor TFIID complex // inferred from direct assay 3677 // DNA binding // inferred from physical interaction /// 3677 // DNA binding // traceable author statement /// 3701 // RNA polymerase I transcription factor activity // traceable author statement /// 3709 // RNA polymerase III transcription factor activity // traceable author statement /// 16251 // general RNA polymerase II transcription factor activity // traceable author statement 1842.37768554688 2227.31396484375 1946.0517578125 1774.86401367188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=SPT15 SGD:YER148W TATA-binding protein tfIId general transcription factor (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- S0000950 // SPT15 SGDID:S0000950, Chr V from 465298-466020, Verified ORF // sgd // 11 // --- /// GENSCAN00000016927 // cdna:Genscan chromosome:SGD1:V:465298:466020:1 // ensembl // 11 // --- /// GENEFINDER00000019595 // cdna:GeneFinder chromosome:SGD1:V:465298:466020:1 // ensembl // 11 // --- /// YER148W // cdna:known chromosome:SGD1:V:465298:466020:1 gene:YER148W // ensembl // 11 // --- --- AFFX_control cerevisiae_gene 1.20696946177763 1.20893451018031 -1.25399918575571 1.05627188880919 -1.03803878570693 Max fold change below threshold 4 1.25399918575571 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772921_at YLR352W.S1 Hypothetical protein 1.25396146010313 680.106964111328 633.609924316406 --- --- --- --- 598.140075683594 743.053527832031 617.160400390625 669.079772949219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR352W /GEN=NIT3 /DB_XREF=GI:6323384 /SEG=NC_001144:+831115,833538 /DEF=Hypothetical ORF /NOTE=Ylr352wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004344 // YLR352W SGDID:S0004344, Chr XII from 831115-833538, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018087 // cdna:Genscan chromosome:SGD1:XII:831115:833538:1 // ensembl // 11 // --- /// GENEFINDER00000024740 // cdna:GeneFinder chromosome:SGD1:XII:831823:833538:1 // ensembl // 11 // --- /// YLR352W // cdna:known chromosome:SGD1:XII:831115:833538:1 gene:YLR352W // ensembl // 11 // --- --- No cerevisiae_gene -1.25396146010313 1.24227343734295 -1.13814143603162 1.03179911442197 1.11860047528925 Max fold change below threshold 4 1.25396146010313 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777657_at YMR295C.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and bud 1.25339146154377 4275.21655273438 3236.09545898438 --- --- 5933 // bud // inferred from direct assay --- 3425.998046875 4256.31640625 4294.11669921875 3046.19287109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR295C /GEN=JNM1 /DB_XREF=GI:6323953 /SEG=NC_001145:-858296,858889 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and bud /NOTE=Ymr295cp; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004910 // YMR295C SGDID:S0004910, Chr XIII from 858889-858296, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018962 // cdna:Genscan chromosome:SGD1:XIII:858296:858889:-1 // ensembl // 11 // --- /// GENEFINDER00000022017 // cdna:GeneFinder chromosome:SGD1:XIII:858296:858889:-1 // ensembl // 11 // --- /// YMR295C // cdna:known chromosome:SGD1:XIII:858296:858889:-1 gene:YMR295C // ensembl // 11 // --- YMR294W-A // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene -1.13364196840205 1.2423580947842 1.06919238577262 1.25339146154377 -1.12468191997471 Max fold change below threshold 4 1.25339146154377 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774465_at SPAC14C4.09.S1 --- 1.25319529045606 --- --- --- --- 9.02552700042725 10.4824676513672 7.42447328567505 7.2020115852356 0.0676269978284836 0.0805663987994194 0.0107421996071935 0.149657994508743 A A P A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC14C4.09 /GEN=agn1 /DEF=alpha glucanase (predicted) (pers. comm. Yolanda Sanchez Martin) --- --- --- --- --- --- AY626901 // Schizosaccharomyces pombe endo-(1,3)-alpha-glucanase (agn1) mRNA, complete cds. // gb // 11 // --- /// SPAC14C4.09 // |agn1||glucan endo-1,3-alpha-glucasidase Agn1|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No 1.09569280314321 1.16142444101834 1.08876969037562 -1.21564542737884 -1.25319529045606 Max fold change below threshold 4 1.25319529045606 Max fold change below threshold APAPPA No 4 0 AAPA 3 1 0 No No x = 1
1769387_at YDL029W.S1 Essential component of the Arp2/3 complex, which is a highly conserved actin nucleation center required for the motility and integrity of actin patches; involved in endocytosis and membrane growth and polarity 1.25302256250127 2598.11474609375 2656.08837890625 ARP2 1 // mitochondrion inheritance // inferred from mutant phenotype /// 1 // mitochondrion inheritance // inferred from physical interaction /// 7015 // actin filament organization // inferred from mutant phenotype 5739 // mitochondrion // traceable author statement /// 5885 // Arp2/3 protein complex // inferred from direct assay 3779 // actin binding // traceable author statement /// 5200 // structural constituent of cytoskeleton // traceable author statement 2793.119140625 2296.60986328125 2899.61962890625 2519.0576171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL029W /GEN=ARP2 /DB_XREF=GI:6320175 /SEG=NC_001136:+399337,400635 /DEF=Involved in endocytosis and membrane growth and polarity /NOTE=Arp2p; go_component: Arp2/3 protein complex [goid GO:0005885] [evidence IDA] [pmid 10377407]; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 10047519]; go_function: actin binding [goid GO:0003779] [evidence TAS] [pmid 10377407]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence TAS] [pmid 10377407]; go_process: actin filament organization [goid GO:0007015] [evidence IMP] [pmid 10377407] --- --- --- --- --- --- S0002187 // ARP2 SGDID:S0002187, Chr IV from 399337-399358,399482-400635, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENSCAN00000025078 // cdna:Genscan chromosome:SGD1:IV:399622:400635:1 // ensembl // 11 // --- /// GENEFINDER00000023791 // cdna:GeneFinder chromosome:SGD1:IV:399676:400635:1 // ensembl // 11 // --- /// YDL029W // cdna:known chromosome:SGD1:IV:399337:400635:1 gene:YDL029W // ensembl // 11 // --- --- No cerevisiae_gene -1.25302256250127 -1.21619226028855 1.08510817948964 1.03812959022486 -1.10879525802331 Max fold change below threshold 4 1.25302256250127 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771729_at YDR186C.S1 Hypothetical protein 1.25292360346819 744.615661621094 960.125793457031 --- --- 5737 // cytoplasm // inferred from direct assay --- 914.752380371094 759.137023925781 730.094299316406 1005.49920654297 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR186C /GEN=ATC1 /DB_XREF=GI:6320392 /SEG=NC_001136:-832852,835485 /DEF=Hypothetical ORF /NOTE=Ydr186cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002594 // YDR186C SGDID:S0002594, Chr IV from 835487-832854, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023786 // cdna:GeneFinder chromosome:SGD1:IV:832854:835487:-1 // ensembl // 11 // --- /// GENSCAN00000025239 // cdna:Genscan chromosome:SGD1:IV:832854:835487:-1 // ensembl // 11 // --- /// YDR186C // cdna:known chromosome:SGD1:IV:832854:835487:-1 gene:YDR186C // ensembl // 11 // --- --- No cerevisiae_gene -1.01215828276809 -1.20498981282795 -1.02389192259405 -1.25292360346819 1.09920370596364 Max fold change below threshold 4 1.25292360346819 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776928_at YOR286W.S1 The authentic, non-tagged protein was localized to the mitochondria 1.25255318134792 1254.08990478516 1555.51824951172 --- --- 5739 // mitochondrion // inferred from direct assay --- 1546.1640625 1234.40991210938 1273.76989746094 1564.87243652344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR286W /GEN=HUA2 /DB_XREF=GI:6324860 /SEG=NC_001147:+850277,850726 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Yor286wp --- --- --- --- --- --- S0005812 // FMP31 SGDID:S0005812, Chr XV from 850277-850726, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017729 // cdna:Genscan chromosome:SGD1:XV:850277:850726:1 // ensembl // 11 // --- /// YOR286W // cdna:known chromosome:SGD1:XV:850277:850726:1 gene:YOR286W // ensembl // 11 // --- GENEFINDER00000022744 // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene 1.18437158934157 -1.25255318134792 1.19724690388007 -1.21384880077794 1.01209986344734 Max fold change below threshold 4 1.25255318134792 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771776_at YPR025C.S1 Cyclin associated with protein kinase Kin28p, which is the TFIIH-associated carboxy-terminal domain (CTD) kinase involved in transcription initiation at RNA polymerase II promoters 1.25141366827104 577.143127441406 671.077484130859 CCL1 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 7070 // negative regulation of transcription from RNA polymerase II promoter, mitotic // traceable author statement 5675 // transcription factor TFIIH complex // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 16251 // general RNA polymerase II transcription factor activity // traceable author statement /// 16538 // cyclin-dependent protein kinase regulator activity // traceable author statement 624.591430664063 578.292114257813 575.994140625 717.563537597656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR025C /GEN=CCL1 /DB_XREF=GI:6325282 /SEG=NC_001148:-613372,614553 /DEF=essential for cell proliferation /NOTE=Ccl1p; go_component: transcription factor TFIIH complex [goid GO:0005675] [evidence TAS] [pmid 9774381]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS] [pmid 9774381]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9774381]; go_process: negative regulation of transcription from Pol II promoter, mitotic [goid GO:0007070] [evidence TAS] [pmid 10384273]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 10384286] --- --- --- --- --- --- S0006229 // CCL1 SGDID:S0006229, Chr XVI from 614555-613374, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017205 // cdna:Genscan chromosome:SGD1:XVI:613374:614555:-1 // ensembl // 11 // --- /// GENEFINDER00000020819 // cdna:GeneFinder chromosome:SGD1:XVI:613374:614555:-1 // ensembl // 11 // --- /// YPR025C // cdna:known chromosome:SGD1:XVI:613374:614555:-1 gene:YPR025C // ensembl // 11 // --- --- No cerevisiae_gene 1.11587301308101 -1.08006216108562 1.25141366827104 -1.08437115347446 1.14885267771725 Max fold change below threshold 4 1.25141366827104 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774750_at YOR322C.S1 Hypothetical protein 1.25128364743112 646.493377685547 671.300842285156 --- --- 5737 // cytoplasm // inferred from direct assay /// 30136 // clathrin-coated vesicle // inferred from direct assay --- 636.4990234375 598.833312988281 694.153442382813 706.102661132813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR322C /GEN=PMT3 /DB_XREF=GI:6324898 /SEG=NC_001147:-918601,921057 /DEF=Hypothetical ORF /NOTE=Yor322cp; go_component: clathrin-coated vesicle [goid GO:0030136] [evidence IDA] [pmid 14562095]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0005849 // YOR322C SGDID:S0005849, Chr XV from 921057-918601, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017776 // cdna:Genscan chromosome:SGD1:XV:918601:921057:-1 // ensembl // 11 // --- /// GENEFINDER00000022666 // cdna:GeneFinder chromosome:SGD1:XV:918601:920274:-1 // ensembl // 11 // --- /// YOR322C // cdna:known chromosome:SGD1:XV:918601:921057:-1 gene:YOR322C // ensembl // 11 // --- --- No cerevisiae_gene -1.25128364743112 -1.06289848883199 1.16113986805263 1.09058053009091 1.1093538797898 Max fold change below threshold 4 1.25128364743112 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774108_at YMR266W.S1 Membrane protein of unknown function; overexpression suppresses NaCl sensitivity of sro7 mutant 1.25031156685868 1998.89111328125 2317.34631347656 --- --- --- --- 2410.38427734375 2069.95532226563 1927.82690429688 2224.30834960938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR266W /GEN=CUE1 /DB_XREF=GI:6323922 /SEG=NC_001145:+798517,801378 /DEF=Overexpression rescues sro7/sop1 in NaCl. Encodes a membrane protein. /NOTE=Ymr266wp --- --- --- --- --- S0004879 // span:22-44,99-121,150-169,389-411,434-456,481-503,538-560,573-595,599-621,641-663,668-690 // numtm:11 S0004879 // RSN1 SGDID:S0004879, Chr XIII from 798517-801378, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022087 // cdna:GeneFinder chromosome:SGD1:XIII:798517:801378:1 // ensembl // 11 // --- /// GENSCAN00000018937 // cdna:Genscan chromosome:SGD1:XIII:799900:801378:1 // ensembl // 11 // --- /// YMR266W // cdna:known chromosome:SGD1:XIII:798517:801378:1 gene:YMR266W // ensembl // 11 // --- --- No cerevisiae_gene -1.03012260137275 -1.16446198206129 -1.0991257032815 -1.25031156685868 -1.08365563514027 Max fold change below threshold 4 1.25031156685868 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776934_at YGL064C.S1 Mitochondrial RNA helicase, plays an essential role in mitochondrial function 1.24966465523501 288.471969604492 302.056747436523 MRH4 7046 // ribosome biogenesis // traceable author statement 5739 // mitochondrion // inferred from direct assay 3724 // RNA helicase activity // inferred from direct assay 279.494781494141 289.362335205078 287.581604003906 324.618713378906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL064C /GEN=MRH4 /DB_XREF=GI:6321374 /SEG=NC_001139:-381524,383209 /DEF=mitochondrial RNA helicase /NOTE=Mrh4p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 12702275]; go_function: RNA helicase activity [goid GO:0003724] [evidence IDA] [pmid 12702275]; go_process: ribosome biogenesis [goid GO:0007046] [evidence TAS] [pmid 12702275] --- --- --- --- --- --- S0003032 // MRH4 SGDID:S0003032, Chr VII from 383211-381526, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019297 // cdna:Genscan chromosome:SGD1:VII:381526:382959:-1 // ensembl // 11 // --- /// YGL064C // cdna:known chromosome:SGD1:VII:381526:383211:-1 gene:YGL064C // ensembl // 11 // --- --- No cerevisiae_gene 1.24966465523501 1.03530496583223 1.01741423390441 1.0289337155654 1.16144820895596 Max fold change below threshold 4 1.24966465523501 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769938_at YKL132C.S1 Putative dihydrofolate synthetase; has similarity to Fol3p; similar to E. coli folylpolyglutamate synthetase/dihydrofolate synthetase 1.24898857987598 163.692878723145 179.723472595215 RMA1 --- 5739 // mitochondrion // inferred from direct assay 4326 // tetrahydrofolylpolyglutamate synthase activity // inferred from sequence similarity 160.267654418945 134.947479248047 192.438278198242 199.179290771484 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL132C /GEN=RMA1 /DB_XREF=GI:6322718 /SEG=NC_001143:-193575,194867 /DEF=probable folyl-polyglutamate synthetase /NOTE=Rma1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: tetrahydrofolylpolyglutamate synthase activity [goid GO:0004326] [evidence ISS] [pmid 10799479]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001615 // RMA1 SGDID:S0001615, Chr XI from 194867-193575, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018318 // cdna:Genscan chromosome:SGD1:XI:193575:194867:-1 // ensembl // 11 // --- /// YKL132C // cdna:known chromosome:SGD1:XI:193575:194867:-1 gene:YKL132C // ensembl // 11 // --- --- No cerevisiae_gene -1.06624292262585 -1.18762984912343 1.24898857987598 1.20073060840587 1.2427915757151 Max fold change below threshold 4 1.24898857987598 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772637_at YIL041W.S1 Golgi-vesicle protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm 1.24855869470352 3658.65417480469 4098.37976074219 --- --- 5737 // cytoplasm // inferred from direct assay --- 4359.5283203125 3621.37817382813 3695.93017578125 3837.23120117188 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL041W /GEN=CBR1 /DB_XREF=GI:6322148 /SEG=NC_001141:+276524,277504 /DEF=Golgi-vesicle protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm /NOTE=Yil041wp --- --- --- --- --- --- S0001303 // GVP36 SGDID:S0001303, Chr IX from 276524-277504, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016446 // cdna:Genscan chromosome:SGD1:IX:276524:277504:1 // ensembl // 11 // --- /// GENEFINDER00000019013 // cdna:GeneFinder chromosome:SGD1:IX:276635:277504:1 // ensembl // 11 // --- /// YIL041W // cdna:known chromosome:SGD1:IX:276524:277504:1 gene:YIL041W // ensembl // 11 // --- --- No cerevisiae_gene -1.24855869470352 -1.20383127943362 -1.17077027234531 -1.17954834452222 -1.13611301789194 Max fold change below threshold 4 1.24855869470352 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770656_at YBR053C.S1 Hypothetical protein 1.24849931465857 3196.67309570313 3158.33850097656 --- --- --- --- 3293.63720703125 3174.61596679688 3218.73022460938 3023.03979492188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR053C /GEN=REG2 /DB_XREF=GI:6319527 /SEG=NC_001134:-339635,340711 /DEF=Hypothetical ORF /NOTE=Ybr053cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0000257 // YBR053C SGDID:S0000257, Chr II from 340749-339673, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000021182 // cdna:Genscan chromosome:SGD1:II:339673:340749:-1 // ensembl // 11 // --- /// GENEFINDER00000022297 // cdna:GeneFinder chromosome:SGD1:II:339673:340749:-1 // ensembl // 11 // --- /// YBR053C // cdna:known chromosome:SGD1:II:339673:340749:-1 gene:YBR053C // ensembl // 11 // --- --- No cerevisiae_gene -1.24849931465857 -1.03749153960013 -1.02111936262628 -1.02327221518882 -1.08951169368128 Max fold change below threshold 4 1.24849931465857 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777949_at YOR043W.S1 Protein required, with binding partner Psr1p, for full activation of the general stress response, possibly through Msn2p dephosphorylation; regulates growth during the diauxic shift; negative regulator of G1 cyclin expression 1.24840217961216 1324.55236816406 1068.68682861328 WHI2 6897 // endocytosis // inferred from mutant phenotype /// 6950 // response to stress // traceable author statement /// 7015 // actin filament organization // inferred from mutant phenotype /// 40008 // regulation of growth // inferred from mutant phenotype --- 19211 // phosphatase activator activity // inferred from mutant phenotype /// 19211 // phosphatase activator activity // inferred from physical interaction 1073.98425292969 1340.76428222656 1308.34045410156 1063.38940429688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR043W /GEN=WHI2 /DB_XREF=GI:6324617 /SEG=NC_001147:+410869,412329 /DEF=Protein required, with binding partner Psr1p, for full activation of the general stress response, possibly through Msn2p dephosphorylation; regulates growth during the diauxic shift; negative regulator of G1 cyclin expression /NOTE=Whi2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: phosphatase activator activity [goid GO:0019211] [evidence IMP,IPI] [pmid 12090248]; go_process: regulation of growth [goid GO:0040008] [evidence IMP] [pmid 2204680]; go_process: response to stress [goid GO:0006950] [evidence TAS] [pmid 12090248] --- --- --- --- --- --- S0005569 // WHI2 SGDID:S0005569, Chr XV from 410869-412329, Verified ORF // sgd // 11 // --- /// GENSCAN00000017497 // cdna:Genscan chromosome:SGD1:XV:410869:412329:1 // ensembl // 11 // --- /// YOR043W // cdna:known chromosome:SGD1:XV:410869:412329:1 gene:YOR043W // ensembl // 11 // --- --- No cerevisiae_gene -1.03052169838946 1.24840217961216 -1.19343213989156 1.21821195285925 -1.00996328211472 Max fold change below threshold 4 1.24840217961216 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773044_at YLR055C.S1 Subunit of the SAGA transcriptional regulatory complex but not present in SAGA-like complex SLIK/SALSA, required for SAGA-mediated inhibition at some promoters 1.24799703436493 1046.07168579102 1075.50955200195 SPT8 16568 // chromatin modification // traceable author statement /// 16573 // histone acetylation // traceable author statement 124 // SAGA complex // inferred from direct assay /// 5634 // nucleus // inferred from direct assay 3712 // transcription cofactor activity // inferred from mutant phenotype /// 3712 // transcription cofactor activity // inferred from physical interaction 1016.09002685547 996.720031738281 1095.42333984375 1134.92907714844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR055C /GEN=SPT8 /DB_XREF=GI:6323084 /SEG=NC_001144:-251273,253081 /DEF=Subunit of the SAGA transcriptional regulatory complex but not present in SAGA-like complex SLIK/SALSA, required for SAGA-mediated inhibition at some promoters /NOTE=Spt8p; go_component: SAGA complex [goid GO:0000124] [evidence IDA] [pmid 9674426]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: transcription cofactor activity [goid GO:0003712] [evidence IMP,IPI] [pmid 9858534]; go_process: chromatin modification [goid GO:0016568] [evidence TAS] [pmid 10839822]; go_process: histone acetylation [goid GO:0016573] [evidence TAS] [pmid 10839822] --- --- --- --- --- --- S0004045 // SPT8 SGDID:S0004045, Chr XII from 253081-251273, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017862 // cdna:Genscan chromosome:SGD1:XII:251273:252844:-1 // ensembl // 11 // --- /// GENEFINDER00000024690 // cdna:GeneFinder chromosome:SGD1:XII:251273:253081:-1 // ensembl // 11 // --- /// YLR055C // cdna:known chromosome:SGD1:XII:251273:253081:-1 gene:YLR055C // ensembl // 11 // --- --- No cerevisiae_gene 1.14653717147179 -1.01943373715827 -1.24799703436493 1.07807705113866 1.11695720571212 Max fold change below threshold 4 1.24799703436493 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774049_at YLR357W.S1 One of 15 subunits of the 'Remodel the Structure of Chromatin' (RSC) complex; required for expression of mid-late sporulation-specific genes; contains two essential bromodomains, a bromo-adjacent homology (BAH) domain, and an AT hook 1.2465214225662 580.370269775391 715.811737060547 RSC2 6338 // chromatin remodeling // inferred from direct assay /// 7062 // sister chromatid cohesion // inferred from mutant phenotype 16586 // RSC complex // inferred from physical interaction --- 637.262329101563 604.454467773438 556.286071777344 794.361145019531 0.00122069998178631 0.00805663969367743 0.00122069998178631 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR357W /GEN=RSC2 /DB_XREF=GI:6323389 /SEG=NC_001144:+841330,843999 /DEF=RSC2 is a member of RSC complex, which Remodels the Structure of Chromatin. Also essential for the 2-micron plasmid to overcome maternal inheritance bias. /NOTE=Rsc2p; go_component: nucleosome remodeling complex [goid GO:0005679] [evidence IPI] [pmid 10025404]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 10025404] --- --- --- --- scop // a.4.5.Thanscriptional regulator IclR, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Thanscriptional regulator IclR, N-terminal domain // 8.39999961853027 --- S0004349 // RSC2 SGDID:S0004349, Chr XII from 841330-843999, Verified ORF // sgd // 11 // --- /// GENSCAN00000018092 // cdna:Genscan chromosome:SGD1:XII:841333:843999:1 // ensembl // 11 // --- /// GENEFINDER00000024720 // cdna:GeneFinder chromosome:SGD1:XII:841333:843999:1 // ensembl // 11 // --- /// YLR357W // cdna:known chromosome:SGD1:XII:841330:843999:1 gene:YLR357W // ensembl // 11 // --- YLR358C // ensembl // 10 // Negative Strand Matching Probes No cerevisiae_gene 1.19661818619955 -1.05427681169928 1.02293517439962 -1.14556585439125 1.2465214225662 Max fold change below threshold 4 1.2465214225662 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1769411_at YBR149W.S1 Large subunit of NADP+ dependent arabinose dehydrogenase, involved in carbohydrate metabolism; small subunit is unidentified 1.24564077581093 4942.08544921875 3892.4365234375 ARA1 5975 // carbohydrate metabolism // inferred from direct assay /// 5975 // carbohydrate metabolism // inferred from mutant phenotype 5829 // cytosol // inferred from direct assay 4032 // aldehyde reductase activity // inferred from direct assay /// 4033 // aldo-keto reductase activity // inferred from sequence similarity /// 45290 // D-arabinose 1-dehydrogenase [NAD(P)+] activity // inferred from direct assay 4227.6328125 5266.11181640625 4618.05908203125 3557.240234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR149W /GEN=ARA1 /DB_XREF=GI:6319625 /SEG=NC_001134:+539943,540977 /DEF=Large subunit of NADP+ dependent arabinose dehydrogenase, involved in carbohydrate metabolism; small subunit is unidentified /NOTE=Ara1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 9920381]; go_function: D-arabinose 1-dehydrogenase [NAD(P)+] activity [goid GO:0045290] [evidence IDA] [pmid 9920381]; go_function: aldehyde reductase activity [goid GO:0004032] [evidence IDA] [pmid 11306085]; go_function: aldo-keto reductase activity [goid GO:0004033] [evidence ISS] [pmid 11306085]; go_process: carbohydrate metabolism [goid GO:0005975] [evidence IDA,IMP] [pmid 9920381] --- --- --- --- --- --- S0000353 // ARA1 SGDID:S0000353, Chr II from 539981-541015, Verified ORF // sgd // 11 // --- /// GENSCAN00000021259 // cdna:Genscan chromosome:SGD1:II:539981:541015:1 // ensembl // 11 // --- /// GENEFINDER00000022219 // cdna:GeneFinder chromosome:SGD1:II:539981:541015:1 // ensembl // 11 // --- /// YBR149W // cdna:known chromosome:SGD1:II:539981:541015:1 gene:YBR149W // ensembl // 11 // --- --- No cerevisiae_gene -1.17244990690889 1.24564077581093 1.03126045252866 1.09235103587446 -1.18845861790461 Max fold change below threshold 4 1.24564077581093 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779582_at YGR057C.S1 Protein possibly involved in a post-Golgi secretory pathway; required for the transport of nitrogen-regulated amino acid permease Gap1p from the Golgi to the cell surface 1.24532769164194 442.408508300781 461.373779296875 LST7 6886 // intracellular protein transport // inferred from direct assay /// 6893 // Golgi to plasma membrane transport // inferred from direct assay /// 15031 // protein transport // inferred from direct assay /// 16192 // vesicle-mediated transport // inferred from direct assay 30120 // vesicle coat // inferred from direct assay 8565 // protein transporter activity // inferred from direct assay 422.848266601563 428.419708251953 456.397308349609 499.899291992188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR057C /GEN=LST7 /DB_XREF=GI:37362653 /SEG=NC_001139:-604775,605503 /DEF=Required for amino acid permease transport from the Golgi to the cell surface /NOTE=Lst7p; go_component: vesicle coat [goid GO:0030120] [evidence IDA] [pmid 9409822]; go_function: protein transporter activity [goid GO:0008565] [evidence IDA] [pmid 9409822]; go_process: Golgi to plasma membrane transport [goid GO:0006893] [evidence IDA] [pmid 9409822]; go_process: intracellular protein transport [goid GO:0006886] [evidence IDA] [pmid 9409822]; go_process: protein transport [goid GO:0015031] [evidence IDA] [pmid 9409822]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IDA] [pmid 9409822] --- --- --- --- --- --- S0003289 // LST7 SGDID:S0003289, Chr VII from 605505-604777, reverse complement, Verified ORF // sgd // 11 // --- /// YGR057C // cdna:known chromosome:SGD1:VII:604777:605505:-1 gene:YGR057C // ensembl // 11 // --- --- No cerevisiae_gene -1.2331447616971 1.01317598318463 1.24532769164194 1.0793406155302 1.18221908773538 Max fold change below threshold 4 1.24532769164194 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775403_at YDL140C.S1 RNA polymerase II largest subunit B220, part of central core; phosphorylation of C-terminal heptapeptide repeat domain regulates association with transcription and splicing factors; similar to bacterial beta-prime 1.24529819646183 1627.15838623047 1472.22509765625 RPO21 6366 // transcription from RNA polymerase II promoter // traceable author statement 5665 // DNA-directed RNA polymerase II, core complex // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 3899 // DNA-directed RNA polymerase activity // traceable author statement 1446.41552734375 1529.96008300781 1724.35668945313 1498.03466796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL140C /GEN=RPO21 /DB_XREF=GI:6320061 /SEG=NC_001136:-205361,210562 /DEF=RNA polymerase II large subunit /NOTE=Rpo21p; go_component: DNA-directed RNA polymerase II, core complex [goid GO:0005665] [evidence TAS] [pmid 9774381]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 9774381]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence TAS] --- --- --- --- --- --- S0002299 // RPO21 SGDID:S0002299, Chr IV from 210562-205361, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023758 // cdna:GeneFinder chromosome:SGD1:IV:205361:210442:-1 // ensembl // 11 // --- /// GENSCAN00000024994 // cdna:Genscan chromosome:SGD1:IV:205361:210562:-1 // ensembl // 11 // --- /// YDL140C // cdna:known chromosome:SGD1:IV:205361:210562:-1 gene:YDL140C // ensembl // 11 // --- --- No cerevisiae_gene -1.19070937986529 1.05775971986244 -1.24529819646183 1.19215858572799 1.03568762893454 Max fold change below threshold 4 1.24529819646183 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773830_at SPAC17A5.02c.S1 --- 1.24529201908999 --- --- --- --- 2.30315661430359 2.01560068130493 2.82985138893127 2.26086235046387 0.633789002895355 0.725830018520355 0.633789002895355 0.567627012729645 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC17A5.02c /GEN=dbr1 /DEF=RNA lariat debranching enzyme (PMID 9001235) --- --- --- --- --- --- SPAC17A5.02c // |dbr1||RNA lariat debranching enzyme |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.15107238246511 -1.14266512988698 1.24529201908999 1.22868387297533 -1.01870713793391 Max fold change below threshold 1 1.24529201908999 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1769373_at YNL216W.S1 DNA-binding protein involved in either activation or repression of transcription, depending on binding site context; also binds telomere sequences and plays a role in telomeric position effect (silencing) and telomere structure 1.24487030532978 718.011383056641 830.893249511719 RAP1 6342 // chromatin silencing // inferred from mutant phenotype /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 6383 // transcription from RNA polymerase III promoter // inferred from mutant phenotype /// 7004 // telomerase-dependent telomere maintenance // inferred from mutant phenotype 783 // nuclear telomere cap complex // inferred from direct assay /// 5634 // nucleus // traceable author statement /// 5724 // nuclear telomeric heterochromatin // traceable author statement 3677 // DNA binding // inferred from direct assay /// 3700 // transcription factor activity // traceable author statement 801.181701660156 653.912658691406 782.110107421875 860.604797363281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL216W /GEN=RAP1 /DB_XREF=GI:6324113 /SEG=NC_001146:+241688,244171 /DEF=DNA-binding protein involved in either activation or repression of transcription, depending on binding site context. Also binds telomere sequences and plays a role in telomeric position effect (silencing) and telomere structure. /NOTE=Rap1p; go_component: nuclear telomere cap complex [goid GO:0000783] [evidence IDA] [pmid 9710643]; go_component: nuclear telomeric heterochromatin [goid GO:0005724] [evidence TAS] [pmid 12080091]; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 7809947]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 11455386]; go_function: transcription factor activity [goid GO:0003700] [evidence TAS] [pmid 7809947]; go_process: chromatin silencing [goid GO:0006342] [evidence IMP] [pmid 1881914]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 12417731]; go_process: telomerase-dependent telomere maintenance [goid GO:0007004] [evidence IMP] [pmid 1881914]; go_process: transcription from Pol III promoter [goid GO:0006383] [evidence IMP] [pmid 2010087] --- --- --- --- scop // a.4.1.DNA-binding domain of rap1 // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; DNA-binding domain of rap1 // 0.0 --- S0005160 // RAP1 SGDID:S0005160, Chr XIV from 241688-244171, Verified ORF // sgd // 11 // --- /// GENSCAN00000019868 // cdna:Genscan chromosome:SGD1:XIV:241688:244171:1 // ensembl // 11 // --- /// GENEFINDER00000020417 // cdna:GeneFinder chromosome:SGD1:XIV:241688:244171:1 // ensembl // 11 // --- /// YNL216W // cdna:known chromosome:SGD1:XIV:241688:244171:1 gene:YNL216W // ensembl // 11 // --- --- No cerevisiae_gene 1.24487030532978 -1.22521209982914 -1.15710885005873 -1.02438479449032 1.07416931212981 Max fold change below threshold 4 1.24487030532978 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776845_at YDL123W.S1 Protein of unknown function, localized to the vacuolar outer membrane 1.24448671835451 1153.25231933594 1331.31323242188 SNA4 --- 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay --- 1282.90979003906 1095.49963378906 1211.00500488281 1379.71667480469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL123W /GEN=SNA4 /DB_XREF=GI:6320080 /SEG=NC_001136:+241418,241840 /DEF=Protein of unknown function, localized to the vacuolar outer membrane /NOTE=Sna4p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 11566881]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002281 // span:7-29,39-61 // numtm:2 S0002281 // SNA4 SGDID:S0002281, Chr IV from 241418-241840, Verified ORF // sgd // 11 // --- /// YDL123W // cdna:known chromosome:SGD1:IV:241418:241840:1 gene:YDL123W // ensembl // 11 // --- --- No cerevisiae_gene 1.15502954109468 -1.17107276941919 -1.24448671835451 -1.05937612550429 1.07545884014392 Max fold change below threshold 4 1.24448671835451 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770217_at YDR145W.S1 Subunit (61/68 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiation and in chromatin modification, similar to histone H2A 1.24436398956807 394.067733764648 495.264450073242 TAF12 114 // G1-specific transcription in mitotic cell cycle // inferred from physical interaction /// 6325 // establishment and/or maintenance of chromatin architecture // inferred from physical interaction /// 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 6473 // protein amino acid acetylation // inferred from physical interaction /// 16568 // chromatin modification // traceable author statement /// 16573 // histone acetylation // traceable author statement 124 // SAGA complex // inferred from direct assay /// 5669 // transcription factor TFIID complex // traceable author statement /// 5669 // transcription factor TFIID complex // inferred from direct assay /// 46695 // SLIK (SAGA-like) complex // inferred from physical interaction 16251 // general RNA polymerase II transcription factor activity // traceable author statement 473.146697998047 380.231750488281 407.903717041016 517.382202148438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR145W /GEN=TAF12 /DB_XREF=GI:6320349 /SEG=NC_001136:+746732,748351 /DEF=Subunit (61/68 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiation and in chromatin modification, similar to histone H2A /NOTE=Taf12p; go_component: SAGA complex [goid GO:0000124] [evidence IDA] [pmid 9674426]; go_component: transcription factor TFIID complex [goid GO:0005669] [evidence TAS] [pmid 9118213]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9118213]; go_process: G1-specific transcription in mitotic cell cycle [goid GO:0000114] [evidence IPI] [pmid 9118213]; go_process: chromatin modification [goid GO:0016568] [evidence TAS] [pmid 10839822]; go_process: establishment and/or maintenance of chromatin architecture [goid GO:0006325] [evidence IPI] [pmid 9674426]; go_process: histone acetylation [goid GO:0016573] [evidence TAS] [pmid 10839822]; go_process: protein amino acid acetylation [goid GO:0006473] [evidence IPI] [pmid 9674426]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 9118213] --- --- --- --- --- --- S0002552 // TAF12 SGDID:S0002552, Chr IV from 746733-748352, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023415 // cdna:GeneFinder chromosome:SGD1:IV:746733:748352:1 // ensembl // 11 // --- /// GENSCAN00000025204 // cdna:Genscan chromosome:SGD1:IV:747759:748352:1 // ensembl // 11 // --- /// YDR145W // cdna:known chromosome:SGD1:IV:746733:748352:1 gene:YDR145W // ensembl // 11 // --- --- No cerevisiae_gene -1.24286699500202 -1.24436398956807 1.18280108495375 -1.1599470125703 1.09349215441544 Max fold change below threshold 4 1.24436398956807 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778450_at YKL176C.S1 Protein possibly involved in a post-Golgi secretory pathway; required for the transport of nitrogen-regulated amino acid permease Gap1p from the Golgi to the cell surface 1.24406330405826 832.825897216797 895.297119140625 LST4 6886 // intracellular protein transport // inferred from direct assay /// 6893 // Golgi to plasma membrane transport // inferred from direct assay /// 15031 // protein transport // inferred from direct assay /// 16192 // vesicle-mediated transport // inferred from direct assay 30120 // vesicle coat // inferred from direct assay 8565 // protein transporter activity // inferred from direct assay 845.316467285156 777.19873046875 888.453063964844 945.277770996094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL176C /GEN=LST4 /DB_XREF=GI:6322672 /SEG=NC_001143:-115505,117991 /DEF=required for amino acid permease transport from the Golgi to the cell surface. involved in regulated secretion/recycling of nitrogen regulated permeases. /NOTE=Lst4p; go_component: vesicle coat [goid GO:0030120] [evidence IDA] [pmid 9409822]; go_function: protein transporter activity [goid GO:0008565] [evidence IDA] [pmid 9409822]; go_process: Golgi to plasma membrane transport [goid GO:0006893] [evidence IDA] [pmid 9409822]; go_process: intracellular protein transport [goid GO:0006886] [evidence IDA] [pmid 9409822]; go_process: protein transport [goid GO:0015031] [evidence IDA] [pmid 9409822]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IDA] [pmid 9409822] --- --- --- --- --- --- S0001659 // LST4 SGDID:S0001659, Chr XI from 117991-115505, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018288 // cdna:Genscan chromosome:SGD1:XI:115505:117991:-1 // ensembl // 11 // --- /// GENEFINDER00000023109 // cdna:GeneFinder chromosome:SGD1:XI:115505:116992:-1 // ensembl // 11 // --- /// YKL176C // cdna:known chromosome:SGD1:XI:115505:117991:-1 gene:YKL176C // ensembl // 11 // --- --- No cerevisiae_gene 1.24406330405826 -1.08764519825621 1.1694437374478 1.05103011516885 1.11825311298143 Max fold change below threshold 4 1.24406330405826 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771687_at YGR204W.S1 Cytoplasmic trifunctional enzyme C1-tetrahydrofolate synthase, involved in single carbon metabolism and required for biosynthesis of purines, thymidylate, methionine, and histidine 1.24336600519255 4193.607421875 3461.30517578125 ADE3 6760 // folic acid and derivative metabolism // traceable author statement /// 9113 // purine base biosynthesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4329 // formate-tetrahydrofolate ligase activity // traceable author statement /// 4329 // formate-tetrahydrofolate ligase activity // inferred from mutant phenotype /// 4477 // methenyltetrahydrofolate cyclohydrolase activity // inferred from mutant phenotype /// 4488 // methylenetetrahydrofolate dehydrogenase (NADP+) activity // inferred from mutant phenotype 3493.39599609375 4343.56982421875 4043.64501953125 3429.21435546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR204W /GEN=ADE3 /DB_XREF=GI:6321643 /SEG=NC_001139:+905937,908777 /DEF=Cytoplasmic trifunctional enzyme C1-tetrahydrofolate synthase, involved in single carbon metabolism and required for biosynthesis of purines, thymidylate, methionine, and histidine /NOTE=Ade3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: formate-tetrahydrofolate ligase activity [goid GO:0004329] [evidence IMP] [pmid 8464869]; go_function: formate-tetrahydrofolate ligase activity [goid GO:0004329] [evidence TAS] [pmid 8852837]; go_function: methenyltetrahydrofolate cyclohydrolase activity [goid GO:0004477] [evidence IMP] [pmid 8464869]; go_function: methylenetetrahydrofolate dehydrogenase (NADP+) activity [goid GO:0004488] [evidence IMP] [pmid 8464869]; go_process: folic acid and derivative metabolism [goid GO:0006760] [evidence TAS]; go_process: purine base biosynthesis [goid GO:0009113] [evidence IMP] [pmid 8464869] --- --- --- --- --- --- S0003436 // ADE3 SGDID:S0003436, Chr VII from 905939-908779, Verified ORF // sgd // 11 // --- /// GENSCAN00000019499 // cdna:Genscan chromosome:SGD1:VII:905939:908779:1 // ensembl // 11 // --- /// GENEFINDER00000021622 // cdna:GeneFinder chromosome:SGD1:VII:905939:908779:1 // ensembl // 11 // --- /// YGR204W // cdna:known chromosome:SGD1:VII:905939:908779:1 gene:YGR204W // ensembl // 11 // --- --- No cerevisiae_gene 1.21338672648937 1.24336600519255 -1.07254416024311 1.15751120802016 -1.0187161355261 Max fold change below threshold 4 1.24336600519255 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777544_at YFL031W.S1 bZIP transcription factor (ATF/CREB1 homolog) that regulates the unfolded protein response, via UPRE binding, and membrane biogenesis; ER stress-induced splicing pathway utilizing Ire1p, Trl1p and Ada5p facilitates efficient Hac1p synthesis 1.24308166585921 3191.6533203125 3171.16845703125 HAC1 6357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 6644 // phospholipid metabolism // traceable author statement /// 6990 // unfolded protein response, positive regulation of target gene transcription // traceable author statement /// 45893 // positive regulation of transcription, DNA-dependent // inferred from direct assay 5634 // nucleus // traceable author statement 3700 // transcription factor activity // inferred from direct assay /// 3704 // specific RNA polymerase II transcription factor activity // traceable author statement 3463.48803710938 3091.744140625 3291.5625 2878.84887695313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL031W /GEN=HAC1 /DB_XREF=GI:14318488 /SEG=NC_001138:+75177,76145 /DEF=bZIP transcription factor (ATF/CREB1 homolog) that regulates the unfolded-protein response, via UPRE binding, and membrane biogenesis; ER stress-induced splicing pathway utilizing Ire1p, Trl1p and Ada5p facilitates efficient Hac1p synthesis /NOTE=Hac1p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 10346810]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence TAS] [pmid 10346810]; go_process: phospholipid metabolism [goid GO:0006644] [evidence TAS] [pmid 10346810]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence TAS] [pmid 10346810]; go_process: unfolded protein response, target gene transcriptional activation [goid GO:0006990] [evidence TAS] [pmid 10346810] --- --- --- --- --- --- S0001863 // HAC1 SGDID:S0001863, Chr VI from 75177-75837,76090-76145, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018601 // cdna:GeneFinder chromosome:SGD1:VI:75177:75869:1 // ensembl // 10 // --- /// GENSCAN00000023215 // cdna:Genscan chromosome:SGD1:VI:75177:75869:1 // ensembl // 10 // --- /// YFL031W // cdna:known chromosome:SGD1:VI:75177:76145:1 gene:YFL031W // ensembl // 11 // --- --- No cerevisiae_gene -1.06128658353392 -1.12023760038864 -1.24308166585921 -1.05223219583689 -1.2030808789015 Max fold change below threshold 4 1.24308166585921 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769931_at YKR068C.S1 Hydrophilic protein that acts in conjunction with SNARE proteins in targeting and fusion of ER to Golgi transport vesicles; component of the TRAPP (transport protein particle) complex 1.24273414442137 1747.02136230469 1893.68231201172 BET3 6888 // ER to Golgi transport // inferred from mutant phenotype 5794 // Golgi apparatus // inferred from direct assay /// 30008 // TRAPP complex // inferred from direct assay --- 1894.53833007813 1747.33679199219 1746.70593261719 1892.82629394531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR068C /GEN=BET3 /DB_XREF=GI:6322921 /SEG=NC_001143:-569970,570551 /DEF=Hydrophilic protein that acts in conjunction with SNARE proteins in targeting and fusion of ER to Golgi transport vesicles /NOTE=Bet3p; go_component: TRAPP [goid GO:0030008] [evidence IDA] [pmid 10727015]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 10727015] --- --- --- --- --- --- S0001776 // BET3 SGDID:S0001776, Chr XI from 570551-569970, reverse complement, Verified ORF // sgd // 11 // --- /// YKR068C // cdna:known chromosome:SGD1:XI:569970:570551:-1 gene:YKR068C // ensembl // 11 // --- --- No cerevisiae_gene 1.24273414442137 -1.08424336897188 1.00785460982169 -1.08463496613848 -1.00090448666013 Max fold change below threshold 4 1.24273414442137 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774676_at YGL207W.S1 Subunit of the heterodimeric FACT complex (Spt16p-Pob3p), facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilizing and then reassembling nucleosome structure 1.24265577539689 816.103118896484 880.754608154297 SPT16 6338 // chromatin remodeling // traceable author statement /// 6358 // regulation of global transcription from RNA polymerase II promoter // traceable author statement /// 6368 // RNA elongation from RNA polymerase II promoter // inferred from physical interaction 790 // nuclear chromatin // traceable author statement /// 5658 // alpha DNA polymerase:primase complex // inferred from direct assay /// 8023 // transcription elongation factor complex // inferred from physical interaction /// 35101 // FACT complex // inferred from genetic interaction /// 35101 // FACT complex // inferred from physical interaction 3711 // transcriptional elongation regulator activity // traceable author statement /// 16944 // RNA polymerase II transcription elongation factor activity // inferred from physical interaction 837.821899414063 674.218811035156 957.987426757813 923.687316894531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL207W /GEN=SPT16 /DB_XREF=GI:6321231 /SEG=NC_001139:+98971,102078 /DEF=Subunit of the heterodimeric FACT complex (Spt16p-Pob3p), facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilizing and then reassembling nucleosome structure /NOTE=Spt16p; go_component: alpha DNA polymerase:primase complex [goid GO:0005658] [evidence IDA] [pmid 10413469]; go_component: nuclear chromatin [goid GO:0000790] [evidence TAS] [pmid 10413469]; go_component: transcription elongation factor complex [goid GO:0008023] [evidence IPI] [pmid 12242279]; go_function: Pol II transcription elongation factor activity [goid GO:0016944] [evidence IPI] [pmid 12242279]; go_function: transcriptional elongation regulator activity [goid GO:0003711] [evidence TAS] [pmid 11606527]; go_process: RNA elongation from Pol II promoter [goid GO:0006368] [evidence IPI] [pmid 12242279]; go_process: chromatin remodeling [goid GO:0006338] [evidence TAS] [pmid 10413469]; go_process: regulation of global transcription from Pol II promoter [goid GO:0006358] [evidence TAS] [pmid 10413469] --- --- --- --- --- --- S0003175 // SPT16 SGDID:S0003175, Chr VII from 98973-102080, Verified ORF // sgd // 11 // --- /// GENSCAN00000019193 // cdna:Genscan chromosome:SGD1:VII:98973:102080:1 // ensembl // 11 // --- /// GENEFINDER00000021666 // cdna:GeneFinder chromosome:SGD1:VII:99909:102080:1 // ensembl // 11 // --- /// YGL207W // cdna:known chromosome:SGD1:VII:98973:102080:1 gene:YGL207W // ensembl // 11 // --- --- No cerevisiae_gene -1.0986373634254 -1.24265577539689 -1.06351712299979 1.14342609978062 1.10248648017021 Max fold change below threshold 4 1.24265577539689 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774880_at YKL006C-A.S1 Intra-Golgi v-SNARE, required for transport of proteins between an early and a later Golgi compartment 1.24262647728376 558.088607788086 601.263305664063 SFT1 6891 // intra-Golgi transport // inferred from mutant phenotype /// 6891 // intra-Golgi transport // inferred from sequence similarity /// 6891 // intra-Golgi transport // inferred from genetic interaction 139 // Golgi membrane // traceable author statement 5485 // v-SNARE activity // inferred from genetic interaction /// 5485 // v-SNARE activity // inferred from sequence similarity /// 5485 // v-SNARE activity // inferred from mutant phenotype 588.482727050781 642.597473144531 473.579742431641 614.043884277344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL006C-A /GEN=SFT1 /DB_XREF=GI:6322846 /SEG=NC_001143:-429841,430275 /DEF=Required for transport of proteins between an early and a later golgi compartment. possible NSF attachment protein receptor (V-SNARE) /NOTE=Sft1p; go_component: Golgi membrane [goid GO:0000139] [evidence TAS] [pmid 7596416]; go_function: v-SNARE activity [goid GO:0005485] [evidence IGI,IMP,ISS] [pmid 7596416]; go_process: intra-Golgi transport [goid GO:0006891] [evidence IGI,IMP,ISS] [pmid 7596416] --- --- --- --- --- S0002101 // span:75-94 // numtm:1 S0002101 // SFT1 SGDID:S0002101, Chr XI from 430275-430240,430098-429841, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// YKL006C-A // cdna:known chromosome:SGD1:XI:429841:430275:-1 gene:YKL006C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.13974671066858 1.09195638819333 1.00202412416647 -1.24262647728376 1.04343569666805 Max fold change below threshold 4 1.24262647728376 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779762_at YNL288W.S1 Evolutionarily conserved subunit of the CCR4-NOT complex involved in controlling mRNA initiation, elongation and degradation; binds Cdc39p 1.24211822066337 966.801330566406 1106.69152832031 CAF40 6357 // regulation of transcription from RNA polymerase II promoter // inferred from physical interaction 30014 // CCR4-NOT complex // inferred from physical interaction --- 1043.13256835938 882.817260742188 1050.78540039063 1170.25048828125 0.000244141003349796 0.00122069998178631 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL288W /GEN=CAF40 /DB_XREF=GI:6324041 /SEG=NC_001146:+90301,91422 /DEF=CCR4 Associated Factor 40 kDa /NOTE=Caf40p; go_component: CCR4-NOT complex [goid GO:0030014] [evidence IPI] [pmid 11733989]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IPI] [pmid 11733989] --- --- --- --- --- --- S0005232 // CAF40 SGDID:S0005232, Chr XIV from 90301-91422, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020647 // cdna:GeneFinder chromosome:SGD1:XIV:90301:91422:1 // ensembl // 11 // --- /// GENSCAN00000019810 // cdna:Genscan chromosome:SGD1:XIV:90349:91422:1 // ensembl // 11 // --- /// YNL288W // cdna:known chromosome:SGD1:XIV:90301:91422:1 gene:YNL288W // ensembl // 11 // --- --- No cerevisiae_gene 1.24211822066337 -1.18159512137587 -1.16606503121163 1.00733639449422 1.12186171132765 Max fold change below threshold 4 1.24211822066337 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779035_at YGR023W.S1 Protein with both structural and functional similarity to Mid2p, which is a plasma membrane sensor required for cell integrity signaling during pheromone-induced morphogenesis; suppresses rgd1 null mutations 1.2419660773747 1886.41400146484 1625.89624023438 MTL1 7047 // cell wall organization and biogenesis // inferred from genetic interaction /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 5887 // integral to plasma membrane // inferred from sequence similarity --- 1633.88793945313 1947.87585449219 1824.9521484375 1617.90454101563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR023W /GEN=MTL1 /DB_XREF=GI:6321459 /SEG=NC_001139:+529266,530921 /DEF=Mid-Two Like 1 /NOTE=Mtl1p; go_component: integral to plasma membrane [goid GO:0005887] [evidence ISS] [pmid 10330137]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IGI,IMP] [pmid 10330137] --- --- --- --- --- S0003255 // span:362-384 // numtm:1 S0003255 // MTL1 SGDID:S0003255, Chr VII from 529268-530923, Verified ORF // sgd // 11 // --- /// YGR023W // cdna:known chromosome:SGD1:VII:529268:530923:1 gene:YGR023W // ensembl // 11 // --- --- No cerevisiae_gene -1.2419660773747 1.19217224600125 -1.05034046894895 1.11693838014884 -1.00987907384664 Max fold change below threshold 4 1.2419660773747 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776346_at YOR176W.S1 Ferrochelatase, a mitochondrial inner membrane protein, catalyzes the insertion of ferrous iron into protoporphyrin IX, the eighth and final step in the heme biosynthetic pathway; Yfh1p mediates the use of iron by Hem15p 1.24028173183503 2703.46911621094 2353.08044433594 HEM15 6783 // heme biosynthesis // traceable author statement 5743 // mitochondrial inner membrane // inferred from sequence similarity /// 5743 // mitochondrial inner membrane // traceable author statement 4325 // ferrochelatase activity // inferred from sequence similarity /// 4325 // ferrochelatase activity // inferred from mutant phenotype 2409.82983398438 2418.0703125 2988.86791992188 2296.3310546875 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR176W /GEN=HEM15 /DB_XREF=GI:6324750 /SEG=NC_001147:+662401,663582 /DEF=Ferrochelatase, a mitochondrial inner membrane protein, catalyzes the insertion of ferrous iron into protoporphyrin IX, the eighth and final step in the heme biosynthetic pathway; Yfh1p mediates the use of iron by Hem15p /NOTE=Hem15p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence ISS,TAS] [pmid 2185242]; go_function: ferrochelatase activity [goid GO:0004325] [evidence IMP,ISS] [pmid 2185242]; go_process: heme biosynthesis [goid GO:0006783] [evidence TAS] [pmid 2185242] --- --- --- --- --- --- S0005702 // HEM15 SGDID:S0005702, Chr XV from 662401-663582, Verified ORF // sgd // 10 // --- /// GENSCAN00000017596 // cdna:Genscan chromosome:SGD1:XV:662488:663582:1 // ensembl // 10 // --- /// GENEFINDER00000022761 // cdna:GeneFinder chromosome:SGD1:XV:662536:663582:1 // ensembl // 10 // --- /// YOR176W // cdna:known chromosome:SGD1:XV:662401:663582:1 gene:YOR176W // ensembl // 10 // --- --- No cerevisiae_gene -1.15212691453823 1.00341952713815 1.23236352005939 1.24028173183503 -1.04942613960874 Max fold change below threshold 4 1.24028173183503 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771217_at YDR452W.S1 Vacuolar endopolyphosphatase with a role in phosphate metabolism; functions as a homodimer 1.23999638321086 2579.3505859375 2610.14184570313 PPN1 6797 // polyphosphate metabolism // inferred from mutant phenotype /// 6797 // polyphosphate metabolism // inferred from direct assay 5774 // vacuolar membrane // inferred from mutant phenotype /// 5774 // vacuolar membrane // inferred from direct assay 298 // endopolyphosphatase activity // inferred from mutant phenotype /// 298 // endopolyphosphatase activity // inferred from direct assay 2511.068359375 2870.60473632813 2288.09643554688 2709.21533203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR452W /GEN=PPN1 /DB_XREF=GI:6320660 /SEG=NC_001136:+1362866,1364890 /DEF=Vacuolar endopolyphosphatase with a role in phosphate metabolism; functions as a homodimer /NOTE=Ppn1p; go_component: vacuolar membrane [goid GO:0005774] [evidence IDA,IMP] [pmid 11566881]; go_function: endopolyphosphatase activity [goid GO:0000298] [evidence IDA,IMP] [pmid 11447286]; go_process: polyphosphate metabolism [goid GO:0006797] [evidence IDA,IMP] [pmid 11447286] --- --- --- --- --- S0002860 // span:21-40 // numtm:1 S0002860 // PPN1 SGDID:S0002860, Chr IV from 1362868-1364892, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023539 // cdna:GeneFinder chromosome:SGD1:IV:1362907:1364892:1 // ensembl // 11 // --- /// YDR452W // cdna:known chromosome:SGD1:IV:1362868:1364892:1 gene:YDR452W // ensembl // 11 // --- GENSCAN00000025453 // ensembl // 5 // Cross Hyb Matching Probes No cerevisiae_gene -1.23999638321086 1.14318064086579 1.04712437201857 -1.09744865660561 1.07890942989125 Max fold change below threshold 4 1.23999638321086 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778956_at YHR004C.S1 Protein of the nuclear envelope required for the spherical shape of the nucleus; required for normal sporulation 1.23984567306571 834.463653564453 729.596374511719 NEM1 6997 // nuclear organization and biogenesis // inferred from genetic interaction /// 6997 // nuclear organization and biogenesis // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 16021 // integral to membrane // inferred from direct assay /// 16021 // integral to membrane // inferred from sequence similarity /// 42175 // nuclear envelope-endoplasmic reticulum network // inferred from direct assay --- 706.428833007813 793.064575195313 875.862731933594 752.763916015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR004C /GEN=NEM1 /DB_XREF=GI:6321791 /SEG=NC_001140:-111748,113088 /DEF=Nuclear Envelope Morphology /NOTE=Nem1p; go_component: integral to membrane [goid GO:0016021] [evidence IDA,ISS] [pmid 9822591]; go_component: nuclear envelope-endoplasmic reticulum network [goid GO:0042175] [evidence IDA] [pmid 9822591]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: nuclear organization and biogenesis [goid GO:0006997] [evidence IGI,IMP] [pmid 9822591]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 9822591] --- --- --- --- --- S0001046 // span:87-109 // numtm:1 S0001046 // NEM1 SGDID:S0001046, Chr VIII from 113088-111748, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016556 // cdna:Genscan chromosome:SGD1:VIII:111748:112752:-1 // ensembl // 11 // --- /// YHR004C // cdna:known chromosome:SGD1:VIII:111748:113088:-1 gene:YHR004C // ensembl // 11 // --- --- No cerevisiae_gene -1.23660268649824 1.12263902340824 1.18656313692692 1.23984567306571 1.06559058866628 Max fold change below threshold 4 1.23984567306571 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770508_at YNL116W.S1 Protein involved in regulating spindle position and orientation, functionally redundant with Dma1p; homolog of S. pombe Dma1 and H. sapiens Chfr 1.23941563203114 1546.63873291016 1622.71380615234 DMA2 132 // establishment of mitotic spindle orientation // inferred from genetic interaction /// 921 // septin ring assembly // inferred from genetic interaction /// 7094 // mitotic spindle checkpoint // inferred from genetic interaction 5737 // cytoplasm // inferred from direct assay --- 1617.81518554688 1660.84716796875 1432.43029785156 1627.61242675781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL116W /GEN=MLS1 /DB_XREF=GI:6324213 /SEG=NC_001146:+408341,409909 /DEF=Homologue of S. pombe DMA1 /NOTE=Ynl116wp --- --- --- --- --- --- S0005060 // DMA2 SGDID:S0005060, Chr XIV from 408341-409909, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019940 // cdna:Genscan chromosome:SGD1:XIV:408341:409909:1 // ensembl // 11 // --- /// GENEFINDER00000020588 // cdna:GeneFinder chromosome:SGD1:XIV:408341:409909:1 // ensembl // 11 // --- /// YNL116W // cdna:known chromosome:SGD1:XIV:408341:409909:1 gene:YNL116W // ensembl // 11 // --- --- No cerevisiae_gene -1.18620391515596 1.02659882464098 -1.23941563203114 -1.12941983143847 1.0060558469833 Max fold change below threshold 4 1.23941563203114 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771234_at YGR218W.S1 Major karyopherin, involved in export of proteins, RNAs, and ribosomal subunits from the nucleus 1.23933843111885 991.326904296875 981.625640869141 CRM1 55 // ribosomal large subunit-nucleus export // inferred from mutant phenotype /// 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 6611 // protein-nucleus export // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 8320 // protein carrier activity // inferred from direct assay 899.410461425781 867.979858398438 1114.67395019531 1063.8408203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR218W /GEN=CRM1 /DB_XREF=GI:6321657 /SEG=NC_001139:+932542,935796 /DEF=Major karyopherin, involved in export of proteins, RNAs, and ribosomal subunits from the nucleus /NOTE=Crm1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9891088]; go_function: protein carrier activity [goid GO:0008320] [evidence IDA] [pmid 9323132]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IMP] [pmid 9323132]; go_process: protein-nucleus export [goid GO:0006611] [evidence IMP] [pmid 9323132]; go_process: ribosomal large subunit-nucleus export [goid GO:0000055] [evidence IMP] [pmid 11313466] --- --- --- --- scop // a.4.5.Restriction endonuclease FokI, N-terminal (recognition) do // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Restriction endonuclease FokI, N-terminal (recognition) domain // 3.70000004768372 --- S0003450 // CRM1 SGDID:S0003450, Chr VII from 932544-935798, Verified ORF // sgd // 11 // --- /// GENSCAN00000019510 // cdna:Genscan chromosome:SGD1:VII:932544:935798:1 // ensembl // 11 // --- /// GENEFINDER00000021412 // cdna:GeneFinder chromosome:SGD1:VII:933063:935798:1 // ensembl // 11 // --- /// YGR218W // cdna:known chromosome:SGD1:VII:932544:935798:1 gene:YGR218W // ensembl // 11 // --- --- No cerevisiae_gene 1.15022026757572 -1.03621121241838 -1.01053730749842 1.23933843111885 1.18282015379948 Max fold change below threshold 4 1.23933843111885 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769795_at YBL089W.S1 Putative transporter, member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters 1.23916271011499 323.130722045898 367.636001586914 AVT5 6810 // transport // inferred from sequence similarity --- 5215 // transporter activity // inferred from sequence similarity 328.369171142578 321.263458251953 324.997985839844 406.90283203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL089W /GEN=AVT5 /DB_XREF=GI:37362614 /SEG=NC_001134:+49571,50950 /DEF=Putative transporter, member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters /NOTE=Avt5p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 11274162]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 11274162] --- --- --- --- --- S0000185 // span:5-27,31-53,136-155,160-182,242-264,279-298,362-384,389-411,432-454 // numtm:9 S0000185 // AVT5 SGDID:S0000185, Chr II from 49571-50950, Verified ORF // sgd // 11 // --- /// YBL089W // cdna:known chromosome:SGD1:II:49571:50950:1 gene:YBL089W // ensembl // 11 // --- --- No cerevisiae_gene 1.02631784142027 -1.02211802403326 1.20635899569154 -1.01037294214 1.23916271011499 Max fold change below threshold 4 1.23916271011499 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778400_at YDR279W.S1 Ribonuclease H2 subunit, required for RNase H2 activity 1.23885610794268 169.944877624512 183.816200256348 RNH202 6260 // DNA replication // inferred from physical interaction 5634 // nucleus // inferred from direct assay 4523 // ribonuclease H activity // inferred from physical interaction 176.860717773438 160.238327026367 179.651428222656 190.771682739258 0.00195312988944352 0.00585938012227416 0.0107421996071935 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR279W /GEN=RNH202 /DB_XREF=GI:6320485 /SEG=NC_001136:+1019360,1020412 /DEF=Ribonuclease H2 subunit, required for RNase H2 activity /NOTE=Rnh202p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: ribonuclease H activity [goid GO:0004523] [evidence IPI] [pmid 14734815]; go_process: DNA replication [goid GO:0006260] [evidence IPI] [pmid 14734815] --- --- --- --- --- --- S0002687 // RNH202 SGDID:S0002687, Chr IV from 1019362-1020414, Verified ORF // sgd // 10 // --- /// YDR279W // cdna:known chromosome:SGD1:IV:1019362:1020414:1 gene:YDR279W // ensembl // 10 // --- --- No cerevisiae_gene -1.22060510325509 -1.10373542370007 1.23885610794268 1.01577914239155 1.0786549163712 Max fold change below threshold 4 1.23885610794268 Max fold change below threshold PPPPPP No 2 0 PPPP 0 4 0 No No 3 < x
1779922_at YMR189W.S1 P subunit of the mitochondrial glycine decarboxylase complex, required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of levels of 5,10-methylene-THF in the cytoplasm 1.23767827021308 1543.57269287109 1837.31689453125 GCV2 6546 // glycine catabolism // inferred from curator /// 6730 // one-carbon compound metabolism // inferred from genetic interaction /// 6730 // one-carbon compound metabolism // inferred from mutant phenotype 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay /// 5960 // glycine cleavage complex // traceable author statement 4375 // glycine dehydrogenase (decarboxylating) activity // inferred from mutant phenotype /// 4375 // glycine dehydrogenase (decarboxylating) activity // inferred from expression pattern 1778.55017089844 1650.14013671875 1437.00524902344 1896.08361816406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR189W /GEN=GCV2 /DB_XREF=GI:6323843 /SEG=NC_001145:+637499,640603 /DEF=P subunit of the mitochondrial glycine decarboxylase complex, required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of levels of 5,10-methylene-THF in the cytoplasm /NOTE=Gcv2p; go_component: mitochondrion [goid GO:0005739] [evidence TAS]; go_function: glycine dehydrogenase (decarboxylating) activity [goid GO:0004375] [evidence IEP,IMP] [pmid 8830251]; go_process: one-carbon compound metabolism [goid GO:0006730] [evidence IGI,IMP] [pmid 10871621] --- --- --- --- --- --- S0004801 // GCV2 SGDID:S0004801, Chr XIII from 637499-640603, Verified ORF // sgd // 11 // --- /// GENSCAN00000018872 // cdna:Genscan chromosome:SGD1:XIII:637754:640603:1 // ensembl // 11 // --- /// GENEFINDER00000021859 // cdna:GeneFinder chromosome:SGD1:XIII:637754:640603:1 // ensembl // 11 // --- /// YMR189W // cdna:known chromosome:SGD1:XIII:637499:640603:1 gene:YMR189W // ensembl // 11 // --- --- No cerevisiae_gene 1.03489575036395 -1.07781765398121 1.04598712288904 -1.23767827021308 1.06608385256079 Max fold change below threshold 4 1.23767827021308 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772112_at YGR028W.S1 Mitochondrial protein involved in sorting of proteins in the mitochondria; putative membrane-spanning ATPase 1.23722035450698 889.861846923828 797.127532958984 MSP1 6626 // protein-mitochondrial targeting // inferred from genetic interaction 5741 // mitochondrial outer membrane // inferred from direct assay 16887 // ATPase activity // inferred from sequence similarity 786.602844238281 940.709655761719 839.014038085938 807.652221679688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR028W /GEN=MSP1 /DB_XREF=GI:6321465 /SEG=NC_001139:+542205,543293 /DEF=40 kDa putative membrane-spanning ATPase /NOTE=Msp1p; go_component: mitochondrial outer membrane [goid GO:0005741] [evidence IDA] [pmid 8226973]; go_function: ATPase activity [goid GO:0016887] [evidence ISS] [pmid 8226973]; go_process: protein-mitochondrial targeting [goid GO:0006626] [evidence IGI] [pmid 8226973] --- --- --- --- --- --- S0003260 // MSP1 SGDID:S0003260, Chr VII from 542207-543295, Verified ORF // sgd // 11 // --- /// GENSCAN00000019362 // cdna:Genscan chromosome:SGD1:VII:542207:543295:1 // ensembl // 11 // --- /// YGR028W // cdna:known chromosome:SGD1:VII:542207:543295:1 gene:YGR028W // ensembl // 11 // --- --- No cerevisiae_gene 1.23722035450698 1.19591438379894 1.05831280536381 1.06662980464863 1.0267598542207 Max fold change below threshold 4 1.23722035450698 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769520_at YLR064W.S1 Hypothetical protein 1.2367465038569 1668.10607910156 1523.54931640625 --- --- 5783 // endoplasmic reticulum // inferred from direct assay --- 1467.62255859375 1655.24975585938 1680.96240234375 1579.47607421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR064W /GEN=RPL22A /DB_XREF=GI:6323093 /SEG=NC_001144:+265457,266278 /DEF=Hypothetical ORF /NOTE=Ylr064wp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004054 // span:25-47,57-74,95-117,174-196,203-220 // numtm:5 S0004054 // YLR064W SGDID:S0004054, Chr XII from 265457-266278, Uncharacterized ORF // sgd // 11 // --- /// YLR064W // cdna:known chromosome:SGD1:XII:265457:266278:1 gene:YLR064W // ensembl // 11 // --- --- No cerevisiae_gene -1.2367465038569 1.12784431267219 1.05571838555593 1.14536424402908 1.07621408854071 Max fold change below threshold 4 1.2367465038569 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776420_at YNL053W.S1 Dual-specificity protein phosphatase required for maintenance of a low level of signaling through the cell integrity pathway; regulates and is regulated by Slt2p; also required for adaptive response to pheromone 1.23644282567766 364.3623046875 359.185348510742 MSG5 754 // adaptation to pheromone during conjugation with cellular fusion // inferred from mutant phenotype /// 6470 // protein amino acid dephosphorylation // inferred from direct assay 5737 // cytoplasm // inferred from direct assay 4727 // prenylated protein tyrosine phosphatase activity // inferred from mutant phenotype 337.616485595703 356.768615722656 371.955993652344 380.754211425781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL053W /GEN=MSG5 /DB_XREF=GI:6324275 /SEG=NC_001146:+529940,531409 /DEF=Dual-specificity protein phosphatase required for maintenance of a low level of signaling through the cell integrity pathway; regulates and is regulated by Slt2p; also required for adaptive response to pheromone /NOTE=Msg5p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: prenylated protein tyrosine phosphatase activity [goid GO:0004727] [evidence IMP] [pmid 8306972]; go_process: adaptation to pheromone during conjugation with cellular fusion [goid GO:0000754] [evidence IMP] [pmid 8306972]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence IDA] [pmid 14703512] --- --- --- --- --- --- S0004998 // MSG5 SGDID:S0004998, Chr XIV from 529941-531410, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020542 // cdna:GeneFinder chromosome:SGD1:XIV:529941:531410:1 // ensembl // 11 // --- /// GENSCAN00000019992 // cdna:Genscan chromosome:SGD1:XIV:530073:531410:1 // ensembl // 11 // --- /// YNL053W // cdna:known chromosome:SGD1:XIV:529941:531410:1 gene:YNL053W // ensembl // 11 // --- --- No cerevisiae_gene 1.23644282567766 1.05672747316577 -1.194908335237 1.10171158554669 1.12777138460512 Max fold change below threshold 4 1.23644282567766 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774622_at YOL146W.S1 Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p), which binds to DNA replication origins and facilitates assembly of the DNA replication machinery 1.23603713386617 134.191444396973 119.943050384521 PSF3 6261 // DNA-dependent DNA replication // inferred from mutant phenotype 811 // GINS complex // inferred from physical interaction 3677 // DNA binding // inferred from physical interaction 126.49382019043 124.442016601563 143.940872192383 113.392280578613 0.0239257998764515 0.0239257998764515 0.0239257998764515 0.0239257998764515 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL146W /GEN=PSF3 /DB_XREF=GI:37362690 /SEG=NC_001147:+48862,49446 /DEF=Partner of sld Five 3 /NOTE=Psf3p; go_component: GINS complex [goid GO:0000811] [evidence IPI] [pmid 12730134]; go_function: DNA binding [goid GO:0003677] [evidence IPI] [pmid 12730134]; go_process: DNA-dependent DNA replication [goid GO:0006261] [evidence IMP] [pmid 12730134] --- --- --- --- --- --- S0005506 // PSF3 SGDID:S0005506, Chr XV from 48862-49446, Verified ORF // sgd // 11 // --- /// YOL146W // cdna:known chromosome:SGD1:XV:48862:49446:1 gene:YOL146W // ensembl // 11 // --- --- No cerevisiae_gene 1.23603713386617 -1.01648802908295 -1.12297733772966 1.13792809779709 -1.11554172422463 Max fold change below threshold 4 1.23603713386617 Max fold change below threshold PPPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1773424_at YER182W.S1 The authentic, non-tagged protein was localized to the mitochondria 1.23586059158762 1071.33764648438 1237.58734130859 --- --- 5739 // mitochondrion // inferred from direct assay --- 1250.30554199219 1076.16333007813 1066.51196289063 1224.869140625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER182W /GEN=SLO1 /DB_XREF=GI:6321030 /SEG=NC_001137:+552520,553254 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Yer182wp --- --- --- --- --- S0000984 // span:29-51 // numtm:1 S0000984 // FMP10 SGDID:S0000984, Chr V from 552520-553254, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016960 // cdna:Genscan chromosome:SGD1:V:552520:553254:1 // ensembl // 11 // --- /// YER182W // cdna:known chromosome:SGD1:V:552520:553254:1 gene:YER182W // ensembl // 11 // --- --- No cerevisiae_gene -1.23586059158762 -1.16181764147401 1.14974201130329 -1.17233147446693 -1.02076662765315 Max fold change below threshold 4 1.23586059158762 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775548_at YDR097C.S1 Protein required for mismatch repair in mitosis and meiosis, forms a complex with Msh2p to repair both single-base & insertion-deletion mispairs; potentially phosphorylated by Cdc28p 1.2353626690485 403.658111572266 428.703659057617 MSH6 6298 // mismatch repair // inferred from direct assay 5634 // nucleus // inferred from physical interaction 3677 // DNA binding // inferred from direct assay /// 5524 // ATP binding // inferred from direct assay /// 16887 // ATPase activity // inferred from direct assay 397.465423583984 376.512786865234 430.803436279297 459.94189453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR097C /GEN=MSH6 /DB_XREF=GI:6320302 /SEG=NC_001136:-640103,643831 /DEF=Protein required for mismatch repair in mitosis and meiosis, forms a complex with Msh2p to repair both single-base & insertion-deletion mispairs; potentially phosphorylated by Cdc28p /NOTE=Msh6p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 9545323]; go_function: ATP binding [goid GO:0005524] [evidence IDA] [pmid 9545323]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 9819445]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 11641390]; go_process: mismatch repair [goid GO:0006298] [evidence IDA] [pmid 11237611] --- --- --- --- --- --- S0002504 // MSH6 SGDID:S0002504, Chr IV from 643832-640104, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023891 // cdna:GeneFinder chromosome:SGD1:IV:640104:643832:-1 // ensembl // 11 // --- /// GENSCAN00000025167 // cdna:Genscan chromosome:SGD1:IV:640104:643832:-1 // ensembl // 11 // --- /// YDR097C // cdna:known chromosome:SGD1:IV:640104:643832:-1 gene:YDR097C // ensembl // 11 // --- --- No cerevisiae_gene 1.2353626690485 -1.05564920355879 1.01126622726233 1.08387651030044 1.15718718469624 Max fold change below threshold 4 1.2353626690485 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771999_at YOL053W.S1 Hypothetical protein 1.23508254610778 502.532913208008 597.006225585938 --- --- --- --- 555.723388671875 477.175994873047 527.889831542969 638.2890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL053W /GEN=THI20 /DB_XREF=GI:6324519 /SEG=NC_001147:+230083,231270 /DEF=Hypothetical ORF /NOTE=Yol053wp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0005414 // span:158-180 // numtm:1 S0005414 // YOL053W SGDID:S0005414, Chr XV from 230083-231270, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017427 // cdna:Genscan chromosome:SGD1:XV:230083:231270:1 // ensembl // 11 // --- /// YOL053W // cdna:known chromosome:SGD1:XV:230083:231270:1 gene:YOL053W // ensembl // 11 // --- GENEFINDER00000022546 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.17596751555724 -1.16460885426503 1.23508254610778 -1.05272607174029 1.14857332894599 Max fold change below threshold 4 1.23508254610778 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771574_at YDR213W.S1 Sterol regulatory element binding protein, induces transcription of sterol transport and biosynthetic genes; involved in the anaerobic induction of DAN/TIR mannoproteins and seripauperins; binucleate zinc cluster protein; Ecm22p homolog 1.23507661821747 82.1345329284668 64.6297149658203 UPC2 8202 // steroid metabolism // inferred from mutant phenotype /// 16126 // sterol biosynthesis // inferred from mutant phenotype 5634 // nucleus // inferred from physical interaction /// 5737 // cytoplasm // inferred from direct assay 3702 // RNA polymerase II transcription factor activity // inferred from sequence similarity /// 3702 // RNA polymerase II transcription factor activity // inferred from direct assay 69.1485977172852 79.8373794555664 84.4316864013672 60.1108322143555 0.00122069998178631 0.00195312988944352 0.00585938012227416 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR213W /GEN=UPC2 /DB_XREF=GI:6320419 /SEG=NC_001136:+889744,892485 /DEF=involved in sterol uptake /NOTE=Upc2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 11533229]; go_function: RNA polymerase II transcription factor activity [goid GO:0003702] [evidence IDA] [pmid 11533229]; go_function: RNA polymerase II transcription factor activity [goid GO:0003702] [evidence ISS] [pmid 9696767]; go_process: steroid metabolism [goid GO:0008202] [evidence IMP] [pmid 9696767]; go_process: sterol biosynthesis [goid GO:0016126] [evidence IMP] [pmid 11533229] --- --- --- --- --- --- S0002621 // UPC2 SGDID:S0002621, Chr IV from 889746-892487, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023515 // cdna:GeneFinder chromosome:SGD1:IV:889746:892487:1 // ensembl // 11 // --- /// GENSCAN00000025263 // cdna:Genscan chromosome:SGD1:IV:889746:892487:1 // ensembl // 11 // --- /// YDR213W // cdna:known chromosome:SGD1:IV:889746:892487:1 gene:YDR213W // ensembl // 11 // --- --- No cerevisiae_gene 1.23507661821747 1.15457698479993 -1.19231436351226 1.22101805659989 -1.15035169486094 Max fold change below threshold 4 1.23507661821747 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1771633_at YPR191W.S1 Subunit 2 of the ubiquinol cytochrome-c reductase complex, which is a component of the mitochondrial inner membrane electron transport chain; transcription is regulated by Hap1p, Hap2p/Hap3p, and heme 1.23461543940459 4241.05078125 3703.77795410156 QCR2 6122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from direct assay /// 9060 // aerobic respiration // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5750 // respiratory chain complex III (sensu Eukaryota) // inferred from direct assay 8121 // ubiquinol-cytochrome-c reductase activity // inferred from direct assay 3639.41723632813 4175.32568359375 4306.77587890625 3768.138671875 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR191W /GEN=QCR2 /DB_XREF=GI:6325449 /SEG=NC_001148:+919375,920481 /DEF=40 kDa ubiquinol cytochrome-c reductase core protein 2 /NOTE=Qcr2p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11914276]; go_component: respiratory chain complex III (sensu Eukarya) [goid GO:0005750] [evidence IDA] [pmid 10873857]; go_function: ubiquinol-cytochrome-c reductase activity [goid GO:0008121] [evidence IDA] [pmid 3028797]; go_process: aerobic respiration [goid GO:0009060] [evidence IMP] [pmid 3028797]; go_process: mitochondrial electron transport, ubiquinol to cytochrome c [goid GO:0006122] [evidence IDA] [pmid 3028797] --- --- --- --- --- --- S0006395 // QCR2 SGDID:S0006395, Chr XVI from 919377-920483, Verified ORF // sgd // 11 // --- /// GENSCAN00000017332 // cdna:Genscan chromosome:SGD1:XVI:919377:920483:1 // ensembl // 11 // --- /// GENEFINDER00000020835 // cdna:GeneFinder chromosome:SGD1:XVI:919377:920483:1 // ensembl // 11 // --- /// YPR191W // cdna:known chromosome:SGD1:XVI:919377:920483:1 gene:YPR191W // ensembl // 11 // --- --- No cerevisiae_gene -1.23461543940459 1.14725117030174 -1.094414680008 1.18336964388602 1.03536869426841 Max fold change below threshold 4 1.23461543940459 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772412_at YAL023C.S1 Protein O-mannosyltransferase, transfers mannose residues from dolichyl phosphate-D-mannose to protein serine/threonine residues; acts in a complex with Pmt1p, can instead interact with Pmt5p in some conditions; target for new antifungals 1.23428769846957 2462.77844238281 2005.62030029297 PMT2 6493 // O-linked glycosylation // inferred from sequence similarity /// 6493 // O-linked glycosylation // inferred from mutant phenotype 5783 // endoplasmic reticulum // traceable author statement 4169 // dolichyl-phosphate-mannose-protein mannosyltransferase activity // inferred from sequence similarity /// 4169 // dolichyl-phosphate-mannose-protein mannosyltransferase activity // inferred from mutant phenotype 2005.95812988281 2475.92944335938 2449.62744140625 2005.28247070313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL023C /GEN=PMT2 /DB_XREF=GI:27469358 /SEG=NC_001133:-106275,108554 /DEF=Transfers mannosyl residues from dolichyl phosphate-D-mannose to seryl and threonyl residues in proteins; acts in complex with Pmt1p /NOTE=Pmt2p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS] [pmid 8918452]; go_function: dolichyl-phosphate-mannose-protein mannosyltransferase activity [goid GO:0004169] [evidence IMP,ISS] [pmid 7852348]; go_process: O-linked glycosylation [goid GO:0006493] [evidence IMP,ISS] [pmid 7852348] --- --- --- --- --- S0000021 // span:59-78,160-182,197-219,232-249,254-273,286-305,610-632,645-664,674-693,713-735 // numtm:10 S0000021 // PMT2 SGDID:S0000021, Chr I from 108552-106273, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018193 // cdna:GeneFinder chromosome:SGD1:I:106273:108552:-1 // ensembl // 11 // --- /// GENSCAN00000020359 // cdna:Genscan chromosome:SGD1:I:106273:108552:-1 // ensembl // 11 // --- /// YAL023C // cdna:known chromosome:SGD1:I:106273:108552:-1 gene:YAL023C // ensembl // 11 // --- --- No cerevisiae_gene 1.1441642144079 1.23428769846957 -1.15435248207635 1.22117575881275 -1.00033693965292 Max fold change below threshold 4 1.23428769846957 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776923_at YPL135W.S1 Conserved protein of the mitochondrial matrix, performs a scaffolding function during assembly of iron-sulfur clusters, interacts physically and functionally with yeast frataxin (Yfh1p); isu1 isu2 double mutant is inviable 1.23412183135023 3422.1435546875 3474.20959472656 ISU1 6879 // iron ion homeostasis // inferred from mutant phenotype /// 6879 // iron ion homeostasis // inferred from sequence similarity /// 16226 // iron-sulfur cluster assembly // inferred from mutant phenotype /// 16226 // iron-sulfur cluster assembly // inferred from sequence similarity 5739 // mitochondrion // inferred from direct assay /// 5759 // mitochondrial matrix // inferred from direct assay 5515 // protein binding // inferred from direct assay 3727.43359375 3529.07763671875 3315.20947265625 3220.98559570313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL135W /GEN=ISU1 /DB_XREF=GI:6325122 /SEG=NC_001148:+297552,298049 /DEF=Iron-sulfur cluster nifU-like protein /NOTE=Isu1p; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 10468587]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11914276]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 12970193]; go_process: iron ion homeostasis [goid GO:0006879] [evidence IMP,ISS] [pmid 10468587]; go_process: iron-sulfur cluster assembly [goid GO:0016226] [evidence IMP,ISS] [pmid 10588895] --- --- --- --- --- --- S0006056 // ISU1 SGDID:S0006056, Chr XVI from 297552-298049, Verified ORF // sgd // 11 // --- /// GENSCAN00000017085 // cdna:Genscan chromosome:SGD1:XVI:297591:298049:1 // ensembl // 9 // --- /// YPL135W // cdna:known chromosome:SGD1:XVI:297552:298049:1 gene:YPL135W // ensembl // 11 // --- YPL135C-A // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene -1.00067364518863 -1.05620617550814 -1.23412183135023 -1.12434331057924 -1.15723385994724 Max fold change below threshold 4 1.23412183135023 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778906_at YOL052C.S1 S-adenosylmethionine decarboxylase, required for the biosynthesis of spermidine and spermine; cells lacking Spe2p require spermine or spermidine for growth in the presence of oxygen but not when grown anaerobically 1.23377294961328 481.66064453125 499.230667114258 SPE2 6597 // spermine biosynthesis // inferred from mutant phenotype /// 8295 // spermidine biosynthesis // inferred from mutant phenotype /// 15940 // pantothenate biosynthesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4014 // adenosylmethionine decarboxylase activity // inferred from direct assay 484.095733642578 430.977844238281 532.343444824219 514.365600585938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL052C /GEN=SPE2 /DB_XREF=GI:6324521 /SEG=NC_001147:-232444,233634 /DEF=S-adenosylmethionine decarboxylase /NOTE=Spe2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: adenosylmethionine decarboxylase activity [goid GO:0004014] [evidence IDA] [pmid 2266128]; go_process: pantothenate biosynthesis [goid GO:0015940] [evidence IMP] [pmid 11154694] --- --- --- --- --- --- S0005412 // SPE2 SGDID:S0005412, Chr XV from 233634-232444, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017428 // cdna:Genscan chromosome:SGD1:XV:232444:233634:-1 // ensembl // 11 // --- /// GENEFINDER00000022924 // cdna:GeneFinder chromosome:SGD1:XV:232444:233634:-1 // ensembl // 11 // --- /// YOL052C // cdna:known chromosome:SGD1:XV:232444:233634:-1 gene:YOL052C // ensembl // 11 // --- --- No cerevisiae_gene 1.23377294961328 -1.12324969859687 1.02042886495358 1.09966564013816 1.06252867943205 Max fold change below threshold 4 1.23377294961328 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769551_at YAL034C.S1 Non-essential protein of unknown function 1.23324077314373 4322.86633300781 4074.94226074219 FUN19 --- --- --- 4500.53125 4992.81591796875 3652.91674804688 3649.35327148438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL034C /GEN=FUN19 /DB_XREF=GI:37362610 /SEG=NC_001133:-80713,81954 /DEF=Protein of unknown function /NOTE=Fun19p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002134 // FUN19 SGDID:S0002134, Chr I from 81952-80711, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018236 // cdna:GeneFinder chromosome:SGD1:I:80711:81616:-1 // ensembl // 11 // --- /// GENSCAN00000020349 // cdna:Genscan chromosome:SGD1:I:80711:81952:-1 // ensembl // 11 // --- /// YAL034C // cdna:known chromosome:SGD1:I:80711:81952:-1 gene:YAL034C // ensembl // 11 // --- --- No cerevisiae_gene -1.13157124846953 1.10938367953089 -1.13947845961835 -1.23203772777092 -1.23324077314373 Max fold change below threshold 4 1.23324077314373 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778784_at YPL117C.S1 Isopentenyl diphosphate:dimethylallyl diphosphate isomerase (IPP isomerase), catalyzes an essential activation step in the isoprenoid biosynthetic pathway; required for viability 1.2328819260894 4067.20007324219 3362.1484375 IDI1 6696 // ergosterol biosynthesis // traceable author statement 5829 // cytosol // traceable author statement 4452 // isopentenyl-diphosphate delta-isomerase activity // traceable author statement 3389.44750976563 4178.78857421875 3955.61157226563 3334.84936523438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL117C /GEN=IDI1 /DB_XREF=GI:6325140 /SEG=NC_001148:-327863,328729 /DEF=Isopentenyl diphosphate:dimethylallyl diphosphate isomerase (IPP isomerase), catalyzes an essential activation step in the isoprenoid biosynthetic pathway; required for viability /NOTE=Idi1p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: isopentenyl-diphosphate delta-isomerase activity [goid GO:0004452] [evidence TAS]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence TAS] --- --- --- --- --- --- S0006038 // IDI1 SGDID:S0006038, Chr XVI from 328729-327863, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017100 // cdna:Genscan chromosome:SGD1:XVI:327863:328729:-1 // ensembl // 11 // --- /// GENEFINDER00000020852 // cdna:GeneFinder chromosome:SGD1:XVI:327863:328729:-1 // ensembl // 11 // --- /// YPL117C // cdna:known chromosome:SGD1:XVI:327863:328729:-1 gene:YPL117C // ensembl // 11 // --- --- No cerevisiae_gene -1.07213426289064 1.2328819260894 1.09979934708028 1.16703727107996 -1.01637199721835 Max fold change below threshold 4 1.2328819260894 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sc-WBP1-3_at AFFX-r2-Sc-WBP1-3 Beta subunit of the oligosaccharyl transferase (OST) glycoprotein complex; required for N-linked glycosylation of proteins in the endoplasmic reticulum 1.23258167443615 2269.208984375 2694.06372070313 WBP1 6487 // N-linked glycosylation // inferred from physical interaction /// 7049 // cell cycle // inferred from direct assay 5635 // nuclear membrane // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay /// 8250 // oligosaccharyl transferase complex // inferred from physical interaction 4579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from physical interaction 2774.91479492188 2251.30297851563 2287.11499023438 2613.21264648438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=WBP1 SGD:YEL002C Oligosaccharyltransferase beta subunit (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- S0000728 // span:393-415 // numtm:1 S0000728 // WBP1 SGDID:S0000728, Chr V from 150013-148721, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016801 // cdna:Genscan chromosome:SGD1:V:148721:150013:-1 // ensembl // 11 // --- /// GENEFINDER00000019675 // cdna:GeneFinder chromosome:SGD1:V:148721:150013:-1 // ensembl // 11 // --- /// YEL002C // cdna:known chromosome:SGD1:V:148721:150013:-1 gene:YEL002C // ensembl // 11 // --- --- AFFX_control cerevisiae_gene -1.20857231841644 -1.23258167443615 -1.11397797928477 -1.2132817137618 -1.06187867973739 Max fold change below threshold 4 1.23258167443615 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774152_at YPL091W.S1 Cytosolic and mitochondrial glutathione oxidoreductase, converts oxidized glutathione to reduced glutathione 1.23256474541646 2352.07995605469 2236.87451171875 GLR1 6979 // response to oxidative stress // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4362 // glutathione-disulfide reductase activity // inferred from direct assay 2186.54248046875 2009.10473632813 2695.05517578125 2287.20654296875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL091W /GEN=GLR1 /DB_XREF=GI:6325166 /SEG=NC_001148:+375497,376948 /DEF=converts oxidized glutathine and NADPH into two glutathiones and NADP+ /NOTE=Glr1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: glutathione-disulfide reductase activity [goid GO:0004362] [evidence IDA] [pmid 7737505]; go_process: response to oxidative stress [goid GO:0006979] [evidence IMP] [pmid 8951820] --- --- --- --- --- --- S0006012 // GLR1 SGDID:S0006012, Chr XVI from 375499-376950, Verified ORF // sgd // 11 // --- /// D37871 // Yeast mRNA for glutathine reductase, partial sequence. // gb // 11 // --- /// GENSCAN00000017120 // cdna:Genscan chromosome:SGD1:XVI:375547:376950:1 // ensembl // 11 // --- /// GENEFINDER00000020921 // cdna:GeneFinder chromosome:SGD1:XVI:375547:376950:1 // ensembl // 11 // --- /// YPL091W // cdna:known chromosome:SGD1:XVI:375499:376950:1 gene:YPL091W // ensembl // 11 // --- --- No cerevisiae_gene -1.12728193621951 -1.08831682138429 1.22432989082945 1.23256474541646 1.04603800904816 Max fold change below threshold 4 1.23256474541646 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772041_at YDR432W.S1 RNA-binding protein that carries poly(A)+ mRNA from the nucleus into the cytoplasm; phosphorylation by Sky1p in the cytoplasm may promote release of mRNAs 1.23206696188801 6401.72192382813 5835.71728515625 NPL3 6406 // mRNA-nucleus export // traceable author statement /// 6406 // mRNA-nucleus export // inferred from genetic interaction 5634 // nucleus // inferred from mutant phenotype /// 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from mutant phenotype 3729 // mRNA binding // inferred from direct assay /// 8143 // poly(A) binding // inferred from direct assay 6421.578125 6739.71875 6063.72509765625 5249.8564453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR432W /GEN=NPL3 /DB_XREF=GI:6320640 /SEG=NC_001136:+1328771,1330015 /DEF=RNA-binding protein that carries poly(A)+ mRNA from the nucleus into the cytoplasm; phosphorylation by Sky1p in the cytoplasm may promote release of mRNAs /NOTE=Npl3p; go_component: cytoplasm [goid GO:0005737] [evidence IMP] [pmid 8675010]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IMP] [pmid 8675010]; go_function: mRNA binding [goid GO:0003729] [evidence IDA] [pmid 7774613]; go_function: poly(A) binding [goid GO:0008143] [evidence IDA] [pmid 7962083]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IGI,TAS] [pmid 11459827] --- --- --- --- --- --- S0002840 // NPL3 SGDID:S0002840, Chr IV from 1328773-1330017, Verified ORF // sgd // 11 // --- /// GENSCAN00000025440 // cdna:Genscan chromosome:SGD1:IV:1328773:1330017:1 // ensembl // 11 // --- /// YDR432W // cdna:known chromosome:SGD1:IV:1328773:1330017:1 gene:YDR432W // ensembl // 11 // --- GENEFINDER00000023731 // ensembl // 8 // Cross Hyb Matching Probes /// YDR433W // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.12925462829473 1.04954243626834 -1.23206696188801 -1.059015377772 -1.2231911847292 Max fold change below threshold 4 1.23206696188801 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770730_at YOR209C.S1 Nicotinate phosphoribosyltransferase, acts in the salvage pathway of NAD+ biosynthesis; required for silencing at rDNA and telomeres and has a role in silencing at mating-type loci; localized to the nucleus 1.23199603165088 949.415740966797 1093.43280029297 NPT1 183 // chromatin silencing at ribosomal DNA // inferred from mutant phenotype /// 1302 // replicative cell aging // inferred from mutant phenotype /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 19358 // nicotinate nucleotide salvage // inferred from direct assay 5634 // nucleus // inferred from direct assay 4516 // nicotinate phosphoribosyltransferase activity // inferred from direct assay 1050.51611328125 852.694396972656 1046.13708496094 1136.34948730469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR209C /GEN=NPT1 /DB_XREF=GI:6324783 /SEG=NC_001147:-736437,737726 /DEF=Nicotinate phosphoribosyltransferase, acts in the salvage pathway of NAD+ biosynthesis; required for silencing at rDNA and telomeres and has a role in silencing at mating-type loci; localized to the nucleus /NOTE=Npt1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11884393]; go_function: nicotinate phosphoribosyltransferase activity [goid GO:0004516] [evidence IDA] [pmid 9521740]; go_process: chromatin silencing at ribosomal DNA [goid GO:0000183] [evidence IMP] [pmid 11901108]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 11901108]; go_process: nicotinate nucleotide salvage [goid GO:0019358] [evidence IDA] [pmid 11884393] --- --- --- --- --- --- S0005735 // NPT1 SGDID:S0005735, Chr XV from 737726-736437, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017625 // cdna:Genscan chromosome:SGD1:XV:736437:737726:-1 // ensembl // 11 // --- /// GENEFINDER00000022725 // cdna:GeneFinder chromosome:SGD1:XV:736437:737726:-1 // ensembl // 11 // --- /// YOR209C // cdna:known chromosome:SGD1:XV:736437:737726:-1 gene:YOR209C // ensembl // 11 // --- --- No cerevisiae_gene -1.22334833834318 -1.23199603165088 -1.04982966155004 -1.00418590295982 1.08170590906534 Max fold change below threshold 4 1.23199603165088 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771252_at YDL139C.S1 Protein of unknown function; isolated as a high-copy suppressor of mutations in the histone fold domain (HFD) of CSE4 1.23160773048312 399.942596435547 468.176620483398 SCM3 --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 442.697509765625 369.195068359375 430.690124511719 493.655731201172 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL139C /GEN=RPO21 /DB_XREF=GI:37362629 /SEG=NC_001136:-211376,212047 /DEF=Suppressor of chromosome missegregation /NOTE=Ydl139cp --- --- --- --- --- --- S0002298 // SCM3 SGDID:S0002298, Chr IV from 212047-211376, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023793 // cdna:GeneFinder chromosome:SGD1:IV:211376:212119:-1 // ensembl // 11 // --- /// GENSCAN00000024995 // cdna:Genscan chromosome:SGD1:IV:211376:212047:-1 // ensembl // 11 // --- /// YDL139C // cdna:known chromosome:SGD1:IV:211376:212047:-1 gene:YDL139C // ensembl // 11 // --- --- No cerevisiae_gene 1.17590577122566 -1.19908836196778 1.23160773048312 -1.02787940695766 1.11510844382776 Max fold change below threshold 4 1.23160773048312 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771293_at YER168C.S1 tRNA nucleotidyltransferase (tRNA CCA-pyrophosphorylase) 1.23159875179661 867.313232421875 1033.3957824707 CCA1 6400 // tRNA modification // inferred from direct assay 5634 // nucleus // non-traceable author statement /// 5737 // cytoplasm // non-traceable author statement /// 5759 // mitochondrial matrix // inferred from direct assay 4810 // tRNA adenylyltransferase activity // inferred from direct assay 974.724792480469 943.195983886719 791.430480957031 1092.06677246094 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER168C /GEN=CCA1 /DB_XREF=GI:6321016 /SEG=NC_001137:-521024,522664 /DEF=tRNA nucleotidyltransferase (tRNA CCA-pyrophosphorylase) /NOTE=Cca1p; go_component: cytoplasm [goid GO:0005737] [evidence NAS] [pmid 1634528]; go_component: mitochondrial matrix [goid GO:0005759] [evidence IDA] [pmid 1634528]; go_component: nucleus [goid GO:0005634] [evidence NAS] [pmid 1634528]; go_function: tRNA adenylyltransferase activity [goid GO:0004810] [evidence IDA] [pmid 1634528]; go_process: tRNA modification [goid GO:0006400] [evidence IDA] [pmid 1634528] --- --- --- --- --- --- S0000970 // CCA1 SGDID:S0000970, Chr V from 522664-521024, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016947 // cdna:Genscan chromosome:SGD1:V:521024:522613:-1 // ensembl // 11 // --- /// GENEFINDER00000019582 // cdna:GeneFinder chromosome:SGD1:V:521024:522637:-1 // ensembl // 11 // --- /// YER168C // cdna:known chromosome:SGD1:V:521024:522664:-1 gene:YER168C // ensembl // 11 // --- --- No cerevisiae_gene 1.09818332510848 -1.03342763236101 1.02299345687456 -1.23159875179661 1.12038472898782 Max fold change below threshold 4 1.23159875179661 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774995_at YML011C.S1 Hypothetical protein 1.23082809981394 595.494842529297 632.049957275391 --- --- 5634 // nucleus // inferred from direct assay --- 612.5068359375 595.40869140625 595.580993652344 651.593078613281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML011C /GEN=ERV25 /DB_XREF=GI:6323631 /SEG=NC_001145:-246895,247428 /DEF=Hypothetical ORF /NOTE=Yml011cp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004472 // YML011C SGDID:S0004472, Chr XIII from 247428-246895, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018708 // cdna:Genscan chromosome:SGD1:XIII:246895:247428:-1 // ensembl // 11 // --- /// YML011C // cdna:known chromosome:SGD1:XIII:246895:247428:-1 gene:YML011C // ensembl // 11 // --- --- No cerevisiae_gene 1.2234821398677 -1.028716652575 1.23082809981394 -1.02841904369943 1.06381356155145 Max fold change below threshold 4 1.23082809981394 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770397_at YDR262W.S1 Hypothetical protein 1.23062851520074 1927.70922851563 1710.64862060547 --- --- 324 // vacuole (sensu Fungi) // inferred from direct assay --- 1730.03234863281 1858.75146484375 1996.6669921875 1691.26489257813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR262W /GEN=EXG2 /DB_XREF=GI:6320468 /SEG=NC_001136:+993126,993944 /DEF=Hypothetical ORF /NOTE=Ydr262wp; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002670 // YDR262W SGDID:S0002670, Chr IV from 993128-993946, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025306 // cdna:Genscan chromosome:SGD1:IV:993182:993946:1 // ensembl // 11 // --- /// GENEFINDER00000023957 // cdna:GeneFinder chromosome:SGD1:IV:993335:993946:1 // ensembl // 11 // --- /// YDR262W // cdna:known chromosome:SGD1:IV:993128:993946:1 gene:YDR262W // ensembl // 11 // --- --- No cerevisiae_gene -1.23062851520074 1.07440272218763 1.11199657080563 1.15412118956354 -1.02292216684968 Max fold change below threshold 4 1.23062851520074 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776704_at YKL028W.S1 TFIIE large subunit, involved in recruitment of RNA polymerase II to the promoter, activation of TFIIH, and promoter opening 1.23045880210116 792.479339599609 1013.69262695313 TFA1 6367 // transcription initiation from RNA polymerase II promoter // traceable author statement 5673 // transcription factor TFIIE complex // traceable author statement 16251 // general RNA polymerase II transcription factor activity // traceable author statement 946.8671875 815.434997558594 769.523681640625 1080.51806640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL028W /GEN=TFA1 /DB_XREF=GI:6322824 /SEG=NC_001143:+385401,386849 /DEF=TFIIE large subunit, involved in recruitment of RNA polymerase II to the promoter, activation of TFIIH, and promoter opening /NOTE=Tfa1p; go_component: transcription factor TFIIE complex [goid GO:0005673] [evidence TAS] [pmid 9774381]; go_function: general RNA polymerase II transcription factor activity [goid GO:0016251] [evidence TAS] [pmid 9774381]; go_process: transcription initiation from Pol II promoter [goid GO:0006367] [evidence TAS] [pmid 10384286] --- --- --- --- --- S0001511 // span:20-39 // numtm:1 S0001511 // TFA1 SGDID:S0001511, Chr XI from 385401-386849, Verified ORF // sgd // 10 // --- /// GENEFINDER00000023039 // cdna:GeneFinder chromosome:SGD1:XI:385401:386849:1 // ensembl // 10 // --- /// YKL028W // cdna:known chromosome:SGD1:XI:385401:386849:1 gene:YKL028W // ensembl // 10 // --- --- No cerevisiae_gene 1.2258273325275 -1.16118046237274 -1.16878301393245 -1.23045880210116 1.14115060767828 Max fold change below threshold 4 1.23045880210116 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770321_at YHR005C-A.S1 Essential protein of the mitochondrial intermembrane space, forms a complex with Tim9p (TIM10 complex) that mediates insertion of hydrophobic proteins at the inner membrane, has homology to Mrs5p, which is also involved in this process 1.23019424740986 2306.46258544922 2409.04028320313 MRS11 45039 // mitochondrial inner membrane protein import // inferred from physical interaction /// 45039 // mitochondrial inner membrane protein import // inferred from mutant phenotype 5758 // mitochondrial intermembrane space // traceable author statement /// 42719 // mitochondrial intermembrane space protein transporter complex // inferred from direct assay 8565 // protein transporter activity // inferred from mutant phenotype /// 8565 // protein transporter activity // inferred from physical interaction /// 51082 // unfolded protein binding // inferred from direct assay 2493.39965820313 2576.421875 2036.50329589844 2324.68090820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR005C-A /GEN=MRS11 /DB_XREF=GI:6321793 /SEG=NC_001140:-115614,115895 /DEF=May act cooperatively with Mrs5p in mitochondrial protein import or other related essential mitochondrial processes /NOTE=Mrs11p; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence TAS] [pmid 9495346]; go_component: mitochondrial intermembrane space protein transporter complex [goid GO:0042719] [evidence IDA] [pmid 9822593]; go_function: chaperone activity [goid GO:0003754] [evidence IDA] [pmid 12138093]; go_function: protein transporter activity [goid GO:0008565] [evidence IMP] [pmid 9430585]; go_function: protein transporter activity [goid GO:0008565] [evidence IPI] [pmid 9495346]; go_process: mitochondrial inner membrane protein import [goid GO:0045039] [evidence IMP] [pmid 9430585]; go_process: mitochondrial inner membrane protein import [goid GO:0045039] [evidence IPI] [pmid 9495346] --- --- --- --- --- --- S0003530 // MRS11 SGDID:S0003530, Chr VIII from 115895-115614, reverse complement, Verified ORF // sgd // 11 // --- /// YHR005C-A // cdna:known chromosome:SGD1:VIII:115614:115895:-1 gene:YHR005C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.23019424740986 1.03329679480934 1.04382028137764 -1.22435336256263 -1.07257716506581 Max fold change below threshold 4 1.23019424740986 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772839_at YDR315C.S1 Inositol 1,3,4,5,6-pentakisphosphate 2-kinase, nuclear protein required for synthesis of 1,2,3,4,5,6-hexakisphosphate (phytate), which is integral to cell function; has 2 motifs conserved in other fungi; ipk1 gle1 double mutant is inviable 1.23008412959516 117.648990631104 131.980445861816 IPK1 6020 // myo-inositol metabolism // inferred from direct assay /// 6020 // myo-inositol metabolism // inferred from genetic interaction /// 6020 // myo-inositol metabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 4428 // inositol or phosphatidylinositol kinase activity // inferred from direct assay /// 4428 // inositol or phosphatidylinositol kinase activity // inferred from mutant phenotype 118.363647460938 116.628059387207 118.669921875 145.597244262695 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR315C /GEN=IPK1 /DB_XREF=GI:6320521 /SEG=NC_001136:-1092734,1093579 /DEF=Inositol 1,3,4,5,6-pentakisphosphate 2-kinase, nuclear protein required for synthesis of 1,2,3,4,5,6-hexakisphosphate (phytate), which is integral to cell function; has 2 motifs conserved in other fungi; ipk1 gle1 double mutant is inviable /NOTE=Ipk1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10390371]; go_function: inositol/phosphatidylinositol kinase activity [goid GO:0004428] [evidence IDA,IMP] [pmid 10390371]; go_process: myo-inositol metabolism [goid GO:0006020] [evidence IDA,IGI,IMP] [pmid 10390371] --- --- --- --- --- --- S0002723 // IPK1 SGDID:S0002723, Chr IV from 1093581-1092736, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025343 // cdna:Genscan chromosome:SGD1:IV:1092736:1093581:-1 // ensembl // 11 // --- /// YDR315C // cdna:known chromosome:SGD1:IV:1092736:1093581:-1 gene:YDR315C // ensembl // 11 // --- --- No cerevisiae_gene -1.0845605236764 -1.01488139374735 1.08326651265682 1.002587571612 1.23008412959516 Max fold change below threshold 4 1.23008412959516 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771120_at YPR181C.S1 GTPase-activating protein; component of the Sec23p-Sec24p heterodimeric complex of the COPII vesicle coat, involved in ER to Golgi transport and autophagy; stimulates the GDP-bound form of Sar1p 1.22981155647153 2759.9482421875 2237.30944824219 SEC23 6888 // ER to Golgi transport // inferred from mutant phenotype /// 6888 // ER to Golgi transport // traceable author statement /// 6914 // autophagy // inferred from mutant phenotype /// 30433 // ER-associated protein catabolism // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 30127 // COPII vesicle coat // traceable author statement 5096 // GTPase activator activity // inferred from direct assay 2253.607421875 2771.51245117188 2748.38403320313 2221.01147460938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR181C /GEN=SEC23 /DB_XREF=GI:6325439 /SEG=NC_001148:-897355,899661 /DEF=cytoplasmic GTPase-activating protein /NOTE=Sec23p; go_component: COPII vesicle coat [goid GO:0030127] [evidence TAS] [pmid 11252894]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 2670558]; go_function: GTPase activator activity [goid GO:0005096] [evidence IDA] [pmid 8451644]; go_process: ER to Golgi transport [goid GO:0006888] [evidence TAS] [pmid 11252894]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 2670558]; go_process: ER-associated protein catabolism [goid GO:0030433] [evidence IMP] [pmid 12538638]; go_process: autophagy [goid GO:0006914] [evidence IMP] [pmid 11694599] --- --- --- --- --- --- S0006385 // SEC23 SGDID:S0006385, Chr XVI from 899663-897357, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017324 // cdna:Genscan chromosome:SGD1:XVI:897357:899663:-1 // ensembl // 11 // --- /// GENEFINDER00000020755 // cdna:GeneFinder chromosome:SGD1:XVI:897357:899663:-1 // ensembl // 11 // --- /// YPR181C // cdna:known chromosome:SGD1:XVI:897357:899663:-1 gene:YPR181C // ensembl // 11 // --- --- No cerevisiae_gene 1.02900070373282 1.22981155647153 -1.08165339614129 1.21954871399761 -1.01467617238284 Max fold change below threshold 4 1.22981155647153 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775276_at YLR153C.S1 Acetyl-coA synthetase isoform, required for growth on glucose; expressed under anaerobic conditions 1.229718872642 4924.6220703125 4330.89672851563 ACS2 6085 // acetyl-CoA biosynthesis // inferred from direct assay 5829 // cytosol // inferred from direct assay 3987 // acetate-CoA ligase activity // inferred from direct assay 4525.306640625 5564.85498046875 4284.38916015625 4136.48681640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR153C /GEN=ACS2 /DB_XREF=GI:6323182 /SEG=NC_001144:-445525,447576 /DEF=one of 2 acetyl-coA synthetases in yeast /NOTE=Acs2p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 9711835]; go_function: acetate-CoA ligase activity [goid GO:0003987] [evidence IDA] [pmid 8910545]; go_process: acetyl-CoA biosynthesis [goid GO:0006085] [evidence IDA] [pmid 8910545] --- --- --- ec // AC2L_HUMAN // (Q9NUB1) Acetyl-coenzyme A synthetase 2-like, mitochondrial precursor (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acetyl-CoA synthetase 2) // 0.0 --- --- S0004143 // ACS2 SGDID:S0004143, Chr XII from 447576-445525, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017938 // cdna:Genscan chromosome:SGD1:XII:445525:447576:-1 // ensembl // 11 // --- /// GENEFINDER00000024766 // cdna:GeneFinder chromosome:SGD1:XII:445525:447576:-1 // ensembl // 11 // --- /// YLR153C // cdna:known chromosome:SGD1:XII:445525:447576:-1 gene:YLR153C // ensembl // 11 // --- --- No cerevisiae_gene -1.05299929715424 1.229718872642 -1.09166530814557 -1.05623146531814 -1.0939975978351 Max fold change below threshold 4 1.229718872642 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777424_at YHR029C.S1 Hypothetical protein 1.22935784981671 986.745971679688 863.701171875 --- --- --- --- 845.599243164063 933.947875976563 1039.54406738281 881.803100585938 0.000732421991415322 0.00122069998178631 0.00122069998178631 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR029C /GEN=DAP2 /DB_XREF=GI:6321818 /SEG=NC_001140:-167669,168553 /DEF=Hypothetical ORF /NOTE=Yhr029cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001071 // YHR029C SGDID:S0001071, Chr VIII from 168553-167669, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016577 // cdna:Genscan chromosome:SGD1:VIII:167669:168553:-1 // ensembl // 11 // --- /// GENEFINDER00000020165 // cdna:GeneFinder chromosome:SGD1:VIII:167669:168553:-1 // ensembl // 11 // --- /// YHR029C // cdna:known chromosome:SGD1:VIII:167669:168553:-1 gene:YHR029C // ensembl // 11 // --- --- No cerevisiae_gene 1.1162323056715 1.10448050128559 -1.22420278314139 1.22935784981671 1.04281443924477 Max fold change below threshold 4 1.22935784981671 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778754_s_at YBL113C.S1 Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// subtelomerically-encoded DNA helicase /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein /// Protein of unknown function, potential Cdc28p substrate /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p /// Hypothetical protein /// Hypothetical protein /// Hypothetical protein 1.22895000973587 2792.7412109375 2668.44873046875 YRF1-5 /// YRF1-4 /// YRF1-7 /// YRF1-6 /// YRF1-3 /// YRF1-2 /// YRF1-1 722 // telomerase-independent telomere maintenance // inferred from genetic interaction 5739 // mitochondrion // inferred from direct assay /// 5634 // nucleus // inferred from curator 4386 // helicase activity // inferred from sequence similarity /// 3678 // DNA helicase activity // inferred from direct assay 2886.29443359375 2454.47436523438 3131.00805664063 2450.60302734375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL113C /DB_XREF=GI:6319355 /SEG=NC_001134:-280,2658 /DEF=Hypothetical ORF /NOTE=Ybl113cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: helicase activity [goid GO:0004386] [evidence ISS] [pmid 9837911]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 0.239999994635582 /// scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 1.89999997615814 /// scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 2.40000009536743 /// scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 5.0 /// scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 6.19999980926514 /// scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 7.30000019073486 --- S0002153 // YBL113C SGDID:S0002153, Chr II from 2658-280, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0002953 // YRF1-1 SGDID:S0002953, Chr IV from 1526304-1531694, Verified ORF // sgd // 11 // --- /// S0006409 // YEL077C SGDID:S0006409, Chr V from 4097-264, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// S0000992 // YRF1-2 SGDID:S0000992, Chr V from 571475-576520, Verified ORF // sgd // 11 // --- /// S0003528 // YRF1-3 SGDID:S0003528, Chr VII from 1084870-1084888,1085037-1090597, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0001042 // YHL050C SGDID:S0001042, Chr VIII from 3310-2670,1897-445, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0001262 // YHR219W SGDID:S0001262, Chr VIII from 560172-562046, Uncharacterized ORF // sgd // 11 // --- /// S0001439 // YIL177C SGDID:S0001439, Chr IX from 6147-4987,4598-483, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0003760 // YJL225C SGDID:S0003760, Chr X from 6130-4970,4581-466, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0003989 // YLL066C SGDID:S0003989, Chr XII from 9836-9550,9450-6120, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0003990 // YLL067C SGDID:S0003990, Chr XII from 4301-4015,3915-585, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0004458 // YRF1-4 SGDID:S0004458, Chr XII from 1067084-1071232, Verified ORF // sgd // 11 // --- /// S0004459 // YRF1-5 SGDID:S0004459, Chr XII from 1072505-1077895, Verified ORF // sgd // 11 // --- /// S0004602 // YML133C SGDID:S0004602, Chr XIII from 4684-3891,3791-461, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// S0005283 // YRF1-6 SGDID:S0005283, Chr XIV from 6098-6080,5931-371, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0007526 // YOR396W SGDID:S0007526, Chr XV from 1087185-1090859, Uncharacterized ORF // sgd // 11 // --- /// S0006204 // YRF1-7 SGDID:S0006204, Chr XVI from 6007-5989,5840-280, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// S0006408 // YPR204W SGDID:S0006408, Chr XVI from 944599-947697, Uncharacterized ORF // sgd // 11 // --- /// AB016599 // Saccharomyces cerevisiae mRNA for Y'-helicase protein 1, complete cds. // gb // 11 // --- /// GENSCAN00000021051 // cdna:Genscan chromosome:SGD1:II:280:2658:-1 // ensembl // 11 // --- /// GENEFINDER00000022386 // cdna:GeneFinder chromosome:SGD1:II:280:1194:-1 // ensembl // 11 // --- /// GENSCAN00000025522 // cdna:Genscan chromosome:SGD1:IV:1526304:1531694:1 // ensembl // 11 // --- /// GENEFINDER00000023783 // cdna:GeneFinder chromosome:SGD1:IV:1526496:1531694:1 // ensembl // 11 // --- /// GENSCAN00000016341 // cdna:Genscan chromosome:SGD1:IX:483:4712:-1 // ensembl // 11 // --- /// GENEFINDER00000019113 // cdna:GeneFinder chromosome:SGD1:IX:483:4997:-1 // ensembl // 11 // --- /// GENSCAN00000016744 // cdna:Genscan chromosome:SGD1:V:264:4097:-1 // ensembl // 11 // --- /// GENEFINDER00000019735 // cdna:GeneFinder chromosome:SGD1:V:264:4407:-1 // ensembl // 11 // --- /// GENSCAN00000016965 // cdna:Genscan chromosome:SGD1:V:571475:576520:1 // ensembl // 11 // --- /// GENEFINDER00000019661 // cdna:GeneFinder chromosome:SGD1:V:571640:576520:1 // ensembl // 11 // --- /// GENSCAN00000019569 // cdna:Genscan chromosome:SGD1:VII:1085210:1090597:1 // ensembl // 11 // --- /// GENEFINDER00000021702 // cdna:GeneFinder chromosome:SGD1:VII:1085402:1090597:1 // ensembl // 11 // --- /// GENSCAN00000016510 // cdna:Genscan chromosome:SGD1:VIII:445:2088:-1 // ensembl // 11 // --- /// GENEFINDER00000020212 // cdna:GeneFinder chromosome:SGD1:VIII:445:4348:-1 // ensembl // 11 // --- /// GENSCAN00000016743 // cdna:Genscan chromosome:SGD1:VIII:560172:562046:1 // ensembl // 11 // --- /// GENEFINDER00000020308 // cdna:GeneFinder chromosome:SGD1:VIII:560271:562046:1 // ensembl // 11 // --- /// GENSCAN00000023968 // cdna:Genscan chromosome:SGD1:X:466:4695:-1 // ensembl // 11 // --- /// GENEFINDER00000024515 // cdna:GeneFinder chromosome:SGD1:X:466:4980:-1 // ensembl // 11 // --- /// GENEFINDER00000024818 // cdna:GeneFinder chromosome:SGD1:XII:455:4616:-1 // ensembl // 10 // --- /// GENSCAN00000017634 // cdna:Genscan chromosome:SGD1:XII:585:3578:-1 // ensembl // 11 // --- /// GENSCAN00000017638 // cdna:Genscan chromosome:SGD1:XII:6120:9113:-1 // ensembl // 11 // --- /// GENEFINDER00000024830 // cdna:GeneFinder chromosome:SGD1:XII:6120:9113:-1 // ensembl // 11 // --- /// GENSCAN00000018171 // cdna:Genscan chromosome:SGD1:XII:1067084:1071232:1 // ensembl // 11 // --- /// GENEFINDER00000024577 // cdna:GeneFinder chromosome:SGD1:XII:1067276:1071232:1 // ensembl // 11 // --- /// GENSCAN00000018172 // cdna:Genscan chromosome:SGD1:XII:1072505:1077895:1 // ensembl // 11 // --- /// GENEFINDER00000024799 // cdna:GeneFinder chromosome:SGD1:XII:1072697:1077895:1 // ensembl // 11 // --- /// GENSCAN00000018602 // cdna:Genscan chromosome:SGD1:XIII:461:3454:-1 // ensembl // 11 // --- /// GENEFINDER00000021916 // cdna:GeneFinder chromosome:SGD1:XIII:461:3454:-1 // ensembl // 11 // --- /// GENSCAN00000019774 // cdna:Genscan chromosome:SGD1:XIV:371:5758:-1 // ensembl // 11 // --- /// GENEFINDER00000020706 // cdna:GeneFinder chromosome:SGD1:XIV:371:5566:-1 // ensembl // 11 // --- /// GENSCAN00000017839 // cdna:Genscan chromosome:SGD1:XV:1085469:1090859:1 // ensembl // 11 // --- /// GENEFINDER00000022814 // cdna:GeneFinder chromosome:SGD1:XV:1085661:1090859:1 // ensembl // 11 // --- /// GENSCAN00000016966 // cdna:Genscan chromosome:SGD1:XVI:280:5667:-1 // ensembl // 11 // --- /// GENEFINDER00000020788 // cdna:GeneFinder chromosome:SGD1:XVI:280:5475:-1 // ensembl // 11 // --- /// GENSCAN00000017339 // cdna:Genscan chromosome:SGD1:XVI:944599:947697:1 // ensembl // 11 // --- /// GENEFINDER00000021044 // cdna:GeneFinder chromosome:SGD1:XVI:944599:947697:1 // ensembl // 11 // --- /// YBL113C // cdna:known chromosome:SGD1:II:280:2658:-1 gene:YBL113C // ensembl // 11 // --- /// YDR545W // cdna:known chromosome:SGD1:IV:1526304:1531694:1 gene:YDR545W // ensembl // 11 // --- /// YIL177C // cdna:known chromosome:SGD1:IX:483:6147:-1 gene:YIL177C // ensembl // 11 // --- /// YEL077C // cdna:known chromosome:SGD1:V:264:4097:-1 gene:YEL077C // ensembl // 11 // --- /// YER190W // cdna:known chromosome:SGD1:V:571475:576520:1 gene:YER190W // ensembl // 11 // --- /// YGR296W // cdna:known chromosome:SGD1:VII:1084870:1090597:1 gene:YGR296W // ensembl // 11 // --- /// YHL050C // cdna:known chromosome:SGD1:VIII:445:3310:-1 gene:YHL050C // ensembl // 11 // --- /// YHR219W // cdna:known chromosome:SGD1:VIII:560172:562046:1 gene:YHR219W // ensembl // 11 // --- /// YJL225C // cdna:known chromosome:SGD1:X:466:6130:-1 gene:YJL225C // ensembl // 11 // --- /// YLL067C // cdna:known chromosome:SGD1:XII:585:4301:-1 gene:YLL067C // ensembl // 11 // --- /// YLL066C // cdna:known chromosome:SGD1:XII:6120:9836:-1 gene:YLL066C // ensembl // 11 // --- /// YLR466W // cdna:known chromosome:SGD1:XII:1067084:1071232:1 gene:YLR466W // ensembl // 11 // --- /// YLR467W // cdna:known chromosome:SGD1:XII:1072505:1077895:1 gene:YLR467W // ensembl // 11 // --- /// YML133C // cdna:known chromosome:SGD1:XIII:461:4684:-1 gene:YML133C // ensembl // 11 // --- /// YNL339C // cdna:known chromosome:SGD1:XIV:371:6098:-1 gene:YNL339C // ensembl // 11 // --- /// YOR396W // cdna:known chromosome:SGD1:XV:1087185:1090859:1 gene:YOR396W // ensembl // 11 // --- /// YPL283C // cdna:known chromosome:SGD1:XVI:280:6007:-1 gene:YPL283C // ensembl // 11 // --- /// YPR204W // cdna:known chromosome:SGD1:XVI:944599:947697:1 gene:YPR204W // ensembl // 11 // --- GENEFINDER00000018544 // ensembl // 4 // Cross Hyb Matching Probes /// S0001826 // sgd // 6 // Negative Strand Matching Probes /// YBL113W-A // ensembl // 6 // Negative Strand Matching Probes /// YDR545C-A // ensembl // 6 // Negative Strand Matching Probes /// YIL177W-A // ensembl // 6 // Negative Strand Matching Probes /// YEL077W-A // ensembl // 6 // Negative Strand Matching Probes /// YER190C-B // ensembl // 6 // Negative Strand Matching Probes /// YFL068W // ensembl // 6 // Negative Strand Matching Probes /// YGR296C-B // ensembl // 6 // Negative Strand Matching Probes /// YHL050W-A // ensembl // 6 // Negative Strand Matching Probes /// YHR219C-A // ensembl // 6 // Negative Strand Matching Probes /// YJL225W-A // ensembl // 6 // Negative Strand Matching Probes /// YLL067W-A // ensembl // 6 // Negative Strand Matching Probes /// YLL066W-A // ensembl // 6 // Negative Strand Matching Probes /// YLR466C-A // ensembl // 6 // Negative Strand Matching Probes /// YLR467C-A // ensembl // 6 // Negative Strand Matching Probes /// YML133W-B // ensembl // 6 // Negative Strand Matching Probes /// YNL339W-B // ensembl // 6 // Negative Strand Matching Probes /// YOR396C-A // ensembl // 6 // Negative Strand Matching Probes /// YPL283W-B // ensembl // 6 // Negative Strand Matching Probes /// YPR204C-A // ensembl // 6 // Negative Strand Matching Probes No cerevisiae_gene -1.06401134728284 -1.17593178990816 1.22895000973587 1.08478470532966 -1.17778946707752 Max fold change below threshold 4 1.22895000973587 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774300_at YEL009C.S1 Transcriptional activator of amino acid biosynthetic genes in response to amino acid starvation; expression is tightly regulated at both the transcriptional and translational levels 1.22884643590418 4243.00659179688 3845.45471191406 GCN4 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 8652 // amino acid biosynthesis // traceable author statement 5634 // nucleus // inferred from physical interaction 3677 // DNA binding // inferred from direct assay /// 16563 // transcriptional activator activity // traceable author statement 4240.2861328125 4645.39794921875 3840.615234375 3450.62329101563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL009C /GEN=GCN4 /DB_XREF=GI:6320828 /SEG=NC_001137:-138918,139763 /DEF=Transcriptional activator of amino acid biosynthetic genes in response to amino acid starvation; expression is tightly regulated at both the transcriptional and translational levels /NOTE=Gcn4p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 2649888]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 3532321]; go_function: transcriptional activator activity [goid GO:0016563] [evidence TAS] [pmid 9268289]; go_process: amino acid biosynthesis [goid GO:0008652] [evidence TAS] [pmid 9268289]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP] [pmid 11390663] --- --- --- --- --- --- S0000735 // GCN4 SGDID:S0000735, Chr V from 139763-138918, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016796 // cdna:Genscan chromosome:SGD1:V:138870:139763:-1 // ensembl // 11 // --- /// GENEFINDER00000019646 // cdna:GeneFinder chromosome:SGD1:V:138870:139763:-1 // ensembl // 11 // --- /// YEL009C // cdna:known chromosome:SGD1:V:138918:139763:-1 gene:YEL009C // ensembl // 11 // --- --- No cerevisiae_gene -1.01746708620854 1.09553879236389 -1.14793311771736 -1.1040642902367 -1.22884643590418 Max fold change below threshold 4 1.22884643590418 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770253_at YDR539W.S1 Hypothetical protein 1.22786444526501 569.060165405273 596.505157470703 --- --- 5737 // cytoplasm // inferred from direct assay --- 553.732299804688 463.622589111328 674.497741699219 639.278015136719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR539W /GEN=PAD1 /DB_XREF=GI:6320748 /SEG=NC_001136:+1512080,1513591 /DEF=Hypothetical ORF /NOTE=Ydr539wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002947 // YDR539W SGDID:S0002947, Chr IV from 1512082-1513593, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023607 // cdna:GeneFinder chromosome:SGD1:IV:1512082:1513593:1 // ensembl // 11 // --- /// GENSCAN00000025519 // cdna:Genscan chromosome:SGD1:IV:1512082:1513593:1 // ensembl // 11 // --- /// YDR539W // cdna:known chromosome:SGD1:IV:1512082:1513593:1 gene:YDR539W // ensembl // 11 // --- --- No cerevisiae_gene 1.22786444526501 -1.19436005235656 1.11843006497765 1.2180935479782 1.15448929990576 Max fold change below threshold 4 1.22786444526501 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770854_at YAL001C.S1 Largest of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part of the TauB domain of TFIIIC that binds DNA at the BoxB promoter sites of tRNA and similar genes; cooperates with Tfc6p in DNA binding 1.22773598077652 621.516967773438 651.587005615234 TFC3 6384 // transcription initiation from RNA polymerase III promoter // traceable author statement 127 // transcription factor TFIIIC complex // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 3709 // RNA polymerase III transcription factor activity // traceable author statement 592.994567871094 605.812133789063 637.221801757813 710.179443359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL001C /GEN=TFC3 /DB_XREF=GI:6319317 /SEG=NC_001133:-147598,151170 /DEF=transcription factor tau (TFIIIC) subunit 138 /NOTE=Tfc3p; go_component: transcription factor TFIIIC complex [goid GO:0000127] [evidence TAS] [pmid 10384303]; go_function: RNA polymerase III transcription factor activity [goid GO:0003709] [evidence TAS] [pmid 10384303]; go_process: transcription initiation from Pol III promoter [goid GO:0006384] [evidence TAS] [pmid 10384303] --- --- --- --- --- --- S0000001 // TFC3 SGDID:S0000001, Chr I from 151168-151099,151008-147596, reverse complement, intron sequence removed, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018207 // cdna:GeneFinder chromosome:SGD1:I:147596:150697:-1 // ensembl // 11 // --- /// GENSCAN00000020378 // cdna:Genscan chromosome:SGD1:I:147596:150697:-1 // ensembl // 11 // --- /// YAL001C // cdna:known chromosome:SGD1:I:147596:151168:-1 gene:YAL001C // ensembl // 11 // --- --- No cerevisiae_gene -1.22773598077652 1.02161498032602 1.21216004367399 1.07458286514411 1.19761542826435 Max fold change below threshold 4 1.22773598077652 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777518_at SPAC3H5.10.S1 --- 1.2276462597561 --- --- --- --- 14.088963508606 11.4764032363892 16.659122467041 14.8089723587036 0.149657994508743 0.0952147990465164 0.111571997404099 0.0952147990465164 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC3H5.10 /GEN=rpl3202 /DEF=60S ribosomal protein L32 --- --- --- --- --- --- AB000914 // Fission yeast mRNA for ribosomal protein L32 homolog, partial cds. // gb // 10 // --- /// SPAC3H5.10 // |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- U97380 // gb // 7 // Cross Hyb Matching Probes /// U97400 // gb // 7 // Cross Hyb Matching Probes No No -1.152314285068 -1.2276462597561 -1.07286329286377 1.18242356557068 1.05110445844067 Max fold change below threshold 4 1.2276462597561 Max fold change below threshold APAAAA No 4 0 AAAA 4 0 0 No No x = 1
1776109_at YOR117W.S1 One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates; recruited to the GAL1-10 promoter region upon induction of transcription 1.22755903212036 2260.54748535156 2061.45123291016 RPT5 6511 // ubiquitin-dependent protein catabolism // traceable author statement 8540 // proteasome regulatory particle, base subcomplex (sensu Eukaryota) // inferred from direct assay /// 8540 // proteasome regulatory particle, base subcomplex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement /// 16887 // ATPase activity // traceable author statement /// 16887 // ATPase activity // inferred from direct assay 2000.91223144531 2194.86669921875 2326.22827148438 2121.990234375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR117W /GEN=RPT5 /DB_XREF=GI:6324691 /SEG=NC_001147:+545029,546333 /DEF=Probable 26S protease subunit and member of the CDC48/PAS1/SEC18 family of ATPases /NOTE=Rpt5p; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence TAS] [pmid 9697412]; go_component: proteasome regulatory particle, base subcomplex (sensu Eukarya) [goid GO:0008540] [evidence IDA] [pmid 11742986]; go_function: ATPase activity [goid GO:0016887] [evidence TAS] [pmid 9697412]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 9697412]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 9697412] --- --- --- --- --- --- S0005643 // RPT5 SGDID:S0005643, Chr XV from 545029-546333, Verified ORF // sgd // 11 // --- /// GENSCAN00000017548 // cdna:Genscan chromosome:SGD1:XV:545029:546333:1 // ensembl // 11 // --- /// GENEFINDER00000022683 // cdna:GeneFinder chromosome:SGD1:XV:545029:546333:1 // ensembl // 11 // --- /// YOR117W // cdna:known chromosome:SGD1:XV:545029:546333:1 gene:YOR117W // ensembl // 11 // --- --- No cerevisiae_gene -1.22755903212036 1.0969330212117 -1.05810439976304 1.16258386296338 1.06051140126333 Max fold change below threshold 4 1.22755903212036 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772772_at YKL146W.S1 Vacuolar transporter, exports large neutral amino acids from the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters 1.22705033599133 3383.17053222656 2851.46252441406 AVT3 15804 // neutral amino acid transport // inferred from genetic interaction /// 15804 // neutral amino acid transport // inferred from mutant phenotype 5773 // vacuole // inferred from mutant phenotype 15175 // neutral amino acid transporter activity // inferred from genetic interaction /// 15175 // neutral amino acid transporter activity // inferred from sequence similarity /// 15175 // neutral amino acid transporter activity // inferred from mutant phenotype 2961.92456054688 3483.828125 3282.51293945313 2741.00048828125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL146W /GEN=AVT3 /DB_XREF=GI:6322702 /SEG=NC_001143:+171788,173866 /DEF=Vacuolar transporter, exports large neutral amino acids from the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters /NOTE=Avt3p; go_component: vacuole [goid GO:0005773] [evidence IMP] [pmid 11274162]; go_function: neutral amino acid transporter activity [goid GO:0015175] [evidence IGI,IMP,ISS] [pmid 11274162]; go_process: neutral amino acid transport [goid GO:0015804] [evidence IGI,IMP] [pmid 11274162] --- --- --- --- --- S0001629 // span:327-349,374-396,411-433,445-467,482-504,517-539,559-581,606-625,630-652,665-687 // numtm:10 S0001629 // AVT3 SGDID:S0001629, Chr XI from 171788-173866, Verified ORF // sgd // 11 // --- /// GENSCAN00000018309 // cdna:Genscan chromosome:SGD1:XI:172874:173866:1 // ensembl // 11 // --- /// YKL146W // cdna:known chromosome:SGD1:XI:171788:173866:1 gene:YKL146W // ensembl // 11 // --- --- No cerevisiae_gene -1.22705033599133 1.17620420567253 -1.11877107140486 1.1082365105366 -1.08059979310845 Max fold change below threshold 4 1.22705033599133 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769857_at YKL085W.S1 Mitochondrial malate dehydrogenase, catalyzes interconversion of malate and oxaloacetate; involved in the tricarboxylic acid (TCA) cycle 1.22700967135812 3807.36364746094 3662.38671875 MDH1 6099 // tricarboxylic acid cycle // traceable author statement /// 6108 // malate metabolism // traceable author statement 5759 // mitochondrial matrix // traceable author statement 30060 // L-malate dehydrogenase activity // traceable author statement 3875.0625 3723.33642578125 3891.39086914063 3449.7109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL085W /GEN=MDH1 /DB_XREF=GI:6322765 /SEG=NC_001143:+278768,279772 /DEF=mitochondrial malate dehydrogenase /NOTE=Mdh1p; go_component: mitochondrial matrix [goid GO:0005759] [evidence TAS] [pmid 9175438]; go_function: L-malate dehydrogenase activity [goid GO:0030060] [evidence TAS] [pmid 2663847]; go_process: malate metabolism [goid GO:0006108] [evidence TAS] [pmid 9175438]; go_process: tricarboxylic acid cycle [goid GO:0006099] [evidence TAS] [pmid 9175438] --- --- --- --- --- --- S0001568 // MDH1 SGDID:S0001568, Chr XI from 278768-279772, Verified ORF // sgd // 11 // --- /// GENSCAN00000018355 // cdna:Genscan chromosome:SGD1:XI:278768:279772:1 // ensembl // 11 // --- /// GENEFINDER00000023155 // cdna:GeneFinder chromosome:SGD1:XI:278768:279772:1 // ensembl // 11 // --- /// YKL085W // cdna:known chromosome:SGD1:XI:278768:279772:1 gene:YKL085W // ensembl // 11 // --- --- No cerevisiae_gene -1.22700967135812 -1.04075003085087 -1.027200772252 1.00421370471847 -1.12330063886693 Max fold change below threshold 4 1.22700967135812 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777629_at YLR451W.S1 Zinc-finger transcription factor that regulates genes involved in branched chain amino acid biosynthesis and ammonia assimilation; positively regulated by alpha-isopropylmalate, an intermediate in leucine biosynthesis 1.22665292671239 362.92008972168 329.974945068359 LEU3 6357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 9098 // leucine biosynthesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 3704 // specific RNA polymerase II transcription factor activity // inferred from direct assay 307.782867431641 348.297424316406 377.542755126953 352.167022705078 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR451W /GEN=LEU3 /DB_XREF=GI:6323484 /SEG=NC_001144:+1036089,1038749 /DEF=Regulates genes involved in branched chain amino acid biosynthesis and in ammonia assimilation. Positively regulated by alpha-isopropylmalate, an intermediate in leucine biosynthesis. /NOTE=Leu3p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 7623798]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence IDA] [pmid 2211632]; go_process: leucine biosynthesis [goid GO:0009098] [evidence IMP] [pmid 2823102]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IDA] [pmid 2211632] --- --- --- --- --- --- S0004443 // LEU3 SGDID:S0004443, Chr XII from 1036089-1038749, Verified ORF // sgd // 11 // --- /// GENSCAN00000018163 // cdna:Genscan chromosome:SGD1:XII:1036089:1038749:1 // ensembl // 11 // --- /// YLR451W // cdna:known chromosome:SGD1:XII:1036089:1038749:1 gene:YLR451W // ensembl // 11 // --- --- No cerevisiae_gene 1.04041741803943 1.13163356759539 -1.11117600499584 1.22665292671239 1.14420606203266 Max fold change below threshold 4 1.22665292671239 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776135_at YPR040W.S1 Protein involved in regulation of the TOR pathway 1.22561063079351 2141.76275634766 1868.12823486328 TIP41 7165 // signal transduction // inferred from mutant phenotype /// 7165 // signal transduction // inferred from physical interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 1876.36657714844 1983.83068847656 2299.69482421875 1859.88989257813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR040W /GEN=TIP41 /DB_XREF=GI:6325297 /SEG=NC_001148:+647300,648370 /DEF=SDF1 the first obserwed null phenotype was Sporulation DeFiciency /NOTE=Tip41p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: signal transduction [goid GO:0007165] [evidence IMP,IPI] [pmid 11741537] --- --- --- --- --- --- S0006244 // TIP41 SGDID:S0006244, Chr XVI from 647302-648372, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020987 // cdna:GeneFinder chromosome:SGD1:XVI:647302:648372:1 // ensembl // 11 // --- /// GENSCAN00000017217 // cdna:Genscan chromosome:SGD1:XVI:647374:648372:1 // ensembl // 11 // --- /// YPR040W // cdna:known chromosome:SGD1:XVI:647302:648372:1 gene:YPR040W // ensembl // 11 // --- --- No cerevisiae_gene -1.15421943662551 1.05727245019011 1.01756675391861 1.22561063079351 -1.00885895699313 Max fold change below threshold 4 1.22561063079351 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771119_at YKL022C.S1 Subunit of the anaphase-promoting complex/cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; required for sporulation 1.2250211517627 606.272430419922 632.010559082031 CDC16 22 // mitotic spindle elongation // traceable author statement /// 70 // mitotic sister chromatid segregation // traceable author statement /// 7091 // mitotic metaphase/anaphase transition // traceable author statement /// 8054 // cyclin catabolism // traceable author statement /// 16567 // protein ubiquitination // inferred from physical interaction /// 31145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from direct assay /// 31145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism // inferred from physical interaction 5680 // anaphase-promoting complex // traceable author statement 4842 // ubiquitin-protein ligase activity // traceable author statement /// 5515 // protein binding // traceable author statement 581.228454589844 588.672668457031 623.872192382813 682.792663574219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL022C /GEN=CDC16 /DB_XREF=GI:6322830 /SEG=NC_001143:-394369,396891 /DEF=Subunit of the anaphase-promoting complex/cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; required for sporulation /NOTE=Cdc16p; go_component: anaphase-promoting complex [goid GO:0005680] [evidence TAS] [pmid 10465783]; go_function: protein binding [goid GO:0005515] [evidence TAS] [pmid 10465783]; go_function: ubiquitin-protein ligase activity [goid GO:0004842] [evidence TAS] [pmid 10465783]; go_process: cyclin catabolism [goid GO:0008054] [evidence TAS] [pmid 10465783]; go_process: mitotic metaphase/anaphase transition [goid GO:0007091] [evidence TAS] [pmid 10465783]; go_process: mitotic sister chromatid segregation [goid GO:0000070] [evidence TAS] [pmid 10465783]; go_process: mitotic spindle elongation [goid GO:0000022] [evidence TAS] [pmid 10465783]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10465783] --- --- --- --- --- --- S0001505 // CDC16 SGDID:S0001505, Chr XI from 396891-394369, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000018400 // cdna:Genscan chromosome:SGD1:XI:394369:396765:-1 // ensembl // 10 // --- /// YKL022C // cdna:known chromosome:SGD1:XI:394369:396891:-1 gene:YKL022C // ensembl // 10 // --- --- No cerevisiae_gene -1.03371329393154 1.01280772441267 1.2250211517627 1.07336828996623 1.17474060015876 Max fold change below threshold 4 1.2250211517627 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779360_at YNL256W.S1 Multifunctional enzyme of the folic acid biosynthesis pathway, has dihydropteroate synthetase, dihydro-6-hydroxymethylpterin pyrophosphokinase, and dihydroneopterin aldolase activities 1.22463643503968 323.473785400391 308.354309082031 FOL1 9396 // folic acid and derivative biosynthesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5740 // mitochondrial membrane // inferred from direct assay 3848 // 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity // inferred from sequence similarity /// 3848 // 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity // inferred from direct assay /// 4150 // dihydroneopterin aldolase activity // inferred from sequence similarity /// 4150 // dihydroneopterin aldolase activity // inferred from direct assay /// 4156 // dihydropteroate synthase activity // inferred from mutant phenotype /// 4156 // dihydropteroate synthase activity // inferred from direct assay 285.540191650391 297.2646484375 349.682922363281 331.168426513672 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL256W /GEN=FOL1 /DB_XREF=GI:37362687 /SEG=NC_001146:+164622,167096 /DEF=Multifunctional enzyme of the folic acid biosynthesis pathway, has dihydropteroate synthetase, dihydro-6-hydroxymethylpterin pyrophosphokinase, and dihydroneopterin aldolase activities /NOTE=Fol1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 8813764]; go_function: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity [goid GO:0003848] [evidence ISS] [pmid 9234673]; go_function: dihydroneopterin aldolase activity [goid GO:0004150] [evidence ISS] [pmid 11752249]; go_function: dihydropteroate synthase activity [goid GO:0004156] [evidence IMP] [pmid 11731153]; go_process: folic acid and derivative biosynthesis [goid GO:0009396] [evidence IMP] [pmid 11731153] --- --- --- --- --- --- S0005200 // FOL1 SGDID:S0005200, Chr XIV from 164622-167096, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020705 // cdna:GeneFinder chromosome:SGD1:XIV:164781:167096:1 // ensembl // 11 // --- /// GENSCAN00000019836 // cdna:Genscan chromosome:SGD1:XIV:164934:167096:1 // ensembl // 11 // --- /// YNL256W // cdna:known chromosome:SGD1:XIV:164622:167096:1 gene:YNL256W // ensembl // 11 // --- --- No cerevisiae_gene -1.01644670732346 1.04106061818949 1.06229038149726 1.22463643503968 1.15979619051019 Max fold change below threshold 4 1.22463643503968 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770566_at YOR028C.S1 Basic leucine zipper transcriptional factor of the yAP-1 family that mediates pleiotropic drug resistance and salt tolerance; localizes constitutively to the nucleus 1.22459446099523 2478.95300292969 2111.60705566406 CIN5 6357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence similarity /// 9651 // response to salt stress // inferred from mutant phenotype /// 42493 // response to drug // inferred from genetic interaction 5634 // nucleus // inferred from direct assay 3677 // DNA binding // inferred from direct assay /// 3702 // RNA polymerase II transcription factor activity // inferred from sequence similarity 2121.27563476563 2574.24291992188 2383.6630859375 2101.9384765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR028C /GEN=CIN5 /DB_XREF=GI:6324602 /SEG=NC_001147:-383532,384419 /DEF=Basic leucine zipper transcriptional factor of the yAP-1 family that mediates pleiotropic drug resistance and salt tolerance; localizes constitutively to the nucleus /NOTE=Cin5p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11179441]; go_function: RNA polymerase II transcription factor activity [goid GO:0003702] [evidence ISS] [pmid 11179441]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence ISS] [pmid 11179441]; go_process: response to drug [goid GO:0042493] [evidence IGI] [pmid 11179441]; go_process: response to salt stress [goid GO:0009651] [evidence IMP] [pmid 9559673] --- --- --- --- --- --- S0005554 // CIN5 SGDID:S0005554, Chr XV from 384419-383532, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022817 // cdna:GeneFinder chromosome:SGD1:XV:383532:384353:-1 // ensembl // 11 // --- /// YOR028C // cdna:known chromosome:SGD1:XV:383532:384419:-1 gene:YOR028C // ensembl // 11 // --- --- No cerevisiae_gene -1.02664802284994 1.21353532644818 1.22459446099523 1.12369323763098 -1.00919967849618 Max fold change below threshold 4 1.22459446099523 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775846_at YMR272C.S1 Sphingolipid alpha-hydroxylase, functions in the alpha-hydroxylation of sphingolipid-associated very long chain fatty acids, has both cytochrome b5-like and hydroxylase/desaturase domains, not essential for growth 1.22447591547433 4417.48876953125 4007.61059570313 SCS7 6631 // fatty acid metabolism // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from mutant phenotype /// 5783 // endoplasmic reticulum // inferred from sequence similarity 16491 // oxidoreductase activity // inferred from mutant phenotype /// 16491 // oxidoreductase activity // inferred from sequence similarity 4412.02587890625 4954.39599609375 3880.58154296875 3603.1953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR272C /GEN=SCS7 /DB_XREF=GI:6323928 /SEG=NC_001145:-809622,810776 /DEF=Required for the hydroxylation of the very long chain fatty acid (VLCFA), located in the endoplasmic reticulum /NOTE=Scs7p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IMP,ISS] [pmid 9559540]; go_function: oxidoreductase activity [goid GO:0016491] [evidence IMP,ISS] [pmid 9559540]; go_process: fatty acid metabolism [goid GO:0006631] [evidence IMP] [pmid 9559540] --- --- --- --- --- S0004885 // span:196-215,222-244,298-320 // numtm:3 S0004885 // SCS7 SGDID:S0004885, Chr XIII from 810776-809622, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018942 // cdna:Genscan chromosome:SGD1:XIII:809622:810776:-1 // ensembl // 11 // --- /// GENEFINDER00000022006 // cdna:GeneFinder chromosome:SGD1:XIII:809622:810776:-1 // ensembl // 11 // --- /// YMR272C // cdna:known chromosome:SGD1:XIII:809622:810776:-1 gene:YMR272C // ensembl // 11 // --- --- No cerevisiae_gene -1.05414162653771 1.12292994920555 -1.18300370140793 -1.13694966335662 -1.22447591547433 Max fold change below threshold 4 1.22447591547433 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769523_at YBR194W.S1 Protein proposed to be associated with the nuclear pore complex 1.22418355864659 174.231231689453 216.374305725098 --- --- 5737 // cytoplasm // inferred from direct assay --- 209.079086303711 170.790634155273 177.671829223633 223.669525146484 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR194W /GEN=MED8 /DB_XREF=GI:6319671 /SEG=NC_001134:+609995,610366 /DEF=Synthetic with Old Yellow Enzyme /NOTE=Ybr194wp --- --- --- --- --- --- S0000398 // SOY1 SGDID:S0000398, Chr II from 610033-610404, Uncharacterized ORF // sgd // 10 // --- /// YBR194W // cdna:known chromosome:SGD1:II:610033:610404:1 gene:YBR194W // ensembl // 10 // --- --- No cerevisiae_gene -1.07356260780417 -1.22418355864659 1.18387818838235 -1.17677116973083 1.06978430555019 Max fold change below threshold 4 1.22418355864659 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771566_at YAR002C-A.S1 Protein that forms a heterotrimeric complex with Erp2p, Emp24p, and Erv25p; member, along with Emp24p and Erv25p, of the p24 family involved in ER to Golgi transport and localized to COPII-coated vesicles 1.22353633074698 1543.92114257813 1598.69110107422 ERP1 6888 // ER to Golgi transport // inferred from physical interaction 5739 // mitochondrion // inferred from direct assay /// 30138 // COPII-coated vesicle // inferred from direct assay --- 1612.96826171875 1485.20251464844 1602.63977050781 1584.41394042969 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAR002C-A /GEN=ERP1 /DB_XREF=GI:6319319 /SEG=NC_001133:-154069,154728 /DEF=Protein that forms a heterotrimeric complex with Erp2p, Emp24p, and Erv25p; member, along with Emp24p and Erv25p, of the p24 family involved in ER to Golgi transport and localized to COPII-coated vesicles /NOTE=Erp1p; go_component: COPII-coated vesicle [goid GO:0030138] [evidence IDA] [pmid 11157978]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IPI] [pmid 11157978] --- --- --- --- --- S0002129 // span:5-27,187-206 // numtm:2 S0002129 // ERP1 SGDID:S0002129, Chr I from 154726-154067, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018237 // cdna:GeneFinder chromosome:SGD1:I:154067:154726:-1 // ensembl // 11 // --- /// GENSCAN00000020380 // cdna:Genscan chromosome:SGD1:I:154067:154726:-1 // ensembl // 11 // --- /// YAR002C-A // cdna:known chromosome:SGD1:I:154067:154726:-1 gene:YAR002C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.22353633074698 -1.08602580847404 -1.14003809722333 -1.00644467421875 -1.01802200836564 Max fold change below threshold 4 1.22353633074698 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769977_at YPL078C.S1 Subunit b of the stator stalk of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis 1.22324154074229 4058.99157714844 3537.04602050781 ATP4 15986 // ATP synthesis coupled proton transport // inferred from sequence similarity /// 15986 // ATP synthesis coupled proton transport // inferred from mutant phenotype 274 // proton-transporting ATP synthase, stator stalk (sensu Eukaryota) // inferred from sequence similarity /// 274 // proton-transporting ATP synthase, stator stalk (sensu Eukaryota) // traceable author statement 5198 // structural molecule activity // inferred from sequence similarity /// 5198 // structural molecule activity // traceable author statement /// 46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // traceable author statement 3747.51245117188 4415.095703125 3702.88745117188 3326.57958984375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL078C /GEN=ATP4 /DB_XREF=GI:6325179 /SEG=NC_001148:-408005,408739 /DEF=Subunit b of the stator stalk of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis /NOTE=Atp4p; go_component: proton-transporting ATP synthase, stator stalk (sensu Eukarya) [goid GO:0000274] [evidence TAS] [pmid 10838056]; go_component: proton-transporting ATP synthase, stator stalk (sensu Eukarya) [goid GO:0000274] [evidence ISS] [pmid 2892678]; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism [goid GO:0046933] [evidence TAS] [pmid 10838056]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 10838056]; go_function: structural molecule activity [goid GO:0005198] [evidence ISS] [pmid 2892678]; go_process: ATP synthesis coupled proton transport [goid GO:0015986] [evidence IMP] [pmid 2553130]; go_process: ATP synthesis coupled proton transport [goid GO:0015986] [evidence ISS] [pmid 2892678] --- --- --- --- --- --- S0005999 // ATP4 SGDID:S0005999, Chr XVI from 408741-408007, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017128 // cdna:Genscan chromosome:SGD1:XVI:408007:408735:-1 // ensembl // 11 // --- /// GENEFINDER00000020899 // cdna:GeneFinder chromosome:SGD1:XVI:408007:408729:-1 // ensembl // 11 // --- /// YPL078C // cdna:known chromosome:SGD1:XVI:408007:408741:-1 gene:YPL078C // ensembl // 11 // --- --- No cerevisiae_gene -1.22324154074229 1.17814036928533 -1.21582112460958 -1.01205140598748 -1.12653623638324 Max fold change below threshold 4 1.22324154074229 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776729_at YMR052W.S1 Protein involved in G1 cell cycle arrest in response to pheromone, in a pathway different from the Far1p-dependent pathway; interacts with Far7p, Far8p, Far9p, Far10p, and Far11p 1.22255976085247 41.680700302124 42.196683883667 FAR3 751 // cell cycle arrest in response to pheromone // inferred from mutant phenotype /// 751 // cell cycle arrest in response to pheromone // inferred from physical interaction 5783 // endoplasmic reticulum // inferred from direct assay --- 43.9641418457031 42.8623123168945 40.4990882873535 40.4292259216309 0.00585938012227416 0.000244141003349796 0.00122069998178631 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR052W /GEN=FAR3 /DB_XREF=GI:6323696 /SEG=NC_001145:+379585,380199 /DEF=Protein involved in G1 cell cycle arrest in response to pheromone, in a pathway different from the Far1p-dependent pathway; interacts with Far7p, Far8p, Far9p, Far10p, and Far11p /NOTE=Far3p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: cell cycle arrest in response to pheromone [goid GO:0000751] [evidence IMP,IPI] [pmid 12588993] --- --- --- --- --- --- S0004656 // FAR3 SGDID:S0004656, Chr XIII from 379585-380199, Verified ORF // sgd // 11 // --- /// YMR052W // cdna:known chromosome:SGD1:XIII:379585:380199:1 gene:YMR052W // ensembl // 11 // --- YMR052C-A // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene 1.15903350786503 -1.02570625496502 1.22255976085247 -1.0855588040344 -1.08743466745875 Max fold change below threshold 4 1.22255976085247 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1777013_at YGR147C.S1 N alpha-acetyl-transferase, transfers acetyl group from acetyl coenzyme A to the N-terminal methionine residues of proteins 1.22212232741047 1352.54193115234 1263.31286621094 NAT2 17196 // N-terminal peptidyl-methionine acetylation // inferred from mutant phenotype 5737 // cytoplasm // inferred from curator /// 5739 // mitochondrion // inferred from direct assay 4596 // peptide alpha-N-acetyltransferase activity // inferred from mutant phenotype /// 4596 // peptide alpha-N-acetyltransferase activity // inferred from sequence similarity 1273.71936035156 1320.31030273438 1384.77355957031 1252.90637207031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR147C /GEN=NAT2 /DB_XREF=GI:6321586 /SEG=NC_001139:-786057,786923 /DEF=Transfers acetyl group from acetyl coenzyme A to the N-termini of proteins beginning with methionine /NOTE=Nat2p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 8175741]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14576278]; go_function: peptide alpha-N-acetyltransferase activity [goid GO:0004596] [evidence IMP,ISS] [pmid 8175741]; go_process: N-terminal peptidyl-methionine acetylation [goid GO:0017196] [evidence IMP] [pmid 8175741] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 2.70000004768372 /// scop // a.2.7.Valyl-tRNA synthetase (ValRS) C-terminal domain // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Valyl-tRNA synthetase (ValRS) C-terminal domain // 0.360000014305115 S0003379 // span:104-126 // numtm:1 S0003379 // NAT2 SGDID:S0003379, Chr VII from 786925-786059, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019454 // cdna:Genscan chromosome:SGD1:VII:786059:786925:-1 // ensembl // 11 // --- /// YGR147C // cdna:known chromosome:SGD1:VII:786059:786925:-1 gene:YGR147C // ensembl // 11 // --- GENEFINDER00000021757 // ensembl // 8 // Cross Hyb Matching Probes /// GENEFINDER00000021590 // ensembl // 2 // Negative Strand Matching Probes No cerevisiae_gene 1.09977277843698 1.03657865604708 1.22212232741047 1.08718890728653 -1.01661176664531 Max fold change below threshold 4 1.22212232741047 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778188_at YHL013C.S1 Hypothetical protein 1.22164697168598 420.147262573242 533.848892211914 --- --- 5737 // cytoplasm // inferred from direct assay --- 480.588409423828 421.621643066406 418.672882080078 587.109375 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHL013C /GEN=YLF2 /DB_XREF=GI:6321774 /SEG=NC_001140:-77426,78349 /DEF=Hypothetical ORF /NOTE=Yhl013cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001005 // YHL013C SGDID:S0001005, Chr VIII from 78349-77426, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016543 // cdna:Genscan chromosome:SGD1:VIII:77426:78349:-1 // ensembl // 11 // --- /// GENEFINDER00000020314 // cdna:GeneFinder chromosome:SGD1:VIII:77426:78349:-1 // ensembl // 11 // --- /// YHL013C // cdna:known chromosome:SGD1:VIII:77426:78349:-1 gene:YHL013C // ensembl // 11 // --- --- No cerevisiae_gene 1.11697563125952 -1.13985706693936 1.07525228250764 -1.14788521061153 1.22164697168598 Max fold change below threshold 4 1.22164697168598 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775532_at YPR052C.S1 High-mobility group non-histone chromatin protein, functionally redundant with Nhp6Bp; homologous to mammalian high mobility group proteins 1 and 2; acts to recruit transcription factor Rcs1p to certain promoters 1.22120911212244 654.061798095703 592.459228515625 NHP6A 6325 // establishment and/or maintenance of chromatin architecture // inferred from physical interaction /// 6338 // chromatin remodeling // inferred from mutant phenotype /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence similarity /// 6359 // regulation of transcription from RNA polymerase III promoter // inferred from mutant phenotype /// 6359 // regulation of transcription from RNA polymerase III promoter // inferred from direct assay /// 6359 // regulation of transcription from RNA polymerase III promoter // inferred from genetic interaction /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 45944 // positive regulation of transcription from RNA polymerase II promoter // inferred from physical interaction 790 // nuclear chromatin // inferred from physical interaction /// 35101 // FACT complex // inferred from genetic interaction /// 35101 // FACT complex // inferred from physical interaction 3682 // chromatin binding // inferred from direct assay /// 3682 // chromatin binding // inferred from physical interaction 605.311645507813 739.212097167969 568.911499023438 579.606811523438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR052C /GEN=NHP6A /DB_XREF=GI:6325309 /SEG=NC_001148:-665688,665969 /DEF=Homologous to mammalian high mobility group proteins 1 and 2; functions redundantly with the highly homologous gene, NHP6B; high-mobility group non-histone chromatin protein /NOTE=Nhp6ap; go_component: nuclear chromatin [goid GO:0000790] [evidence IPI] [pmid 10228169]; go_function: chromatin binding [goid GO:0003682] [evidence IDA,IPI] [pmid 10228169]; go_process: establishment and/or maintenance of chromatin architecture [goid GO:0006325] [evidence IPI] [pmid 10228169]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IGI,ISS] [pmid 9872947]; go_process: regulation of transcription from Pol III promoter [goid GO:0006359] [evidence IDA,IGI,IMP] [pmid 11239460] --- --- --- --- --- --- S0006256 // NHP6A SGDID:S0006256, Chr XVI from 665971-665690, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017225 // cdna:Genscan chromosome:SGD1:XVI:665690:665971:-1 // ensembl // 11 // --- /// GENEFINDER00000021038 // cdna:GeneFinder chromosome:SGD1:XVI:665690:665971:-1 // ensembl // 11 // --- /// YPR052C // cdna:known chromosome:SGD1:XVI:665690:665971:-1 gene:YPR052C // ensembl // 11 // --- YPR053C // ensembl // 6 // Cross Hyb Matching Probes /// M95912 // gb // 11 // Negative Strand Matching Probes No cerevisiae_gene 1.16986998440926 1.22120911212244 -1.13754804864464 -1.06398208956377 -1.04434874379204 Max fold change below threshold 4 1.22120911212244 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772201_at YOR098C.S1 Nuclear pore complex (NPC) subunit, involved in protein import/export and in export of RNAs, possible karyopherin release factor that accelerates release of karyopherin-cargo complexes after transport across NPC; potential Cdc28p substrate 1.22060756154963 1029.95257568359 1320.26354980469 NUP1 6405 // RNA-nucleus export // inferred from mutant phenotype /// 6406 // mRNA-nucleus export // traceable author statement /// 6407 // rRNA-nucleus export // traceable author statement /// 6408 // snRNA-nucleus export // traceable author statement /// 6409 // tRNA-nucleus export // traceable author statement /// 6606 // protein-nucleus import // inferred from mutant phenotype /// 6607 // NLS-bearing substrate-nucleus import // traceable author statement /// 6608 // snRNP protein-nucleus import // traceable author statement /// 6609 // mRNA-binding (hnRNP) protein-nucleus import // traceable author statement /// 6610 // ribosomal protein-nucleus import // traceable author statement /// 6611 // protein-nucleus export // traceable author statement /// 6998 // nuclear membrane organization and biogenesis // inferred from mutant phenotype /// 6999 // nuclear pore organization and biogenesis // traceable author statement 5643 // nuclear pore // inferred from direct assay 5198 // structural molecule activity // traceable author statement /// 5515 // protein binding // inferred from physical interaction 1197.38696289063 980.976196289063 1078.92895507813 1443.14013671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR098C /GEN=NUP1 /DB_XREF=GI:6324672 /SEG=NC_001147:-507948,511178 /DEF=Nuclear pore complex (NPC) subunit, involved in protein import/export and in export of RNAs, possible karyopherin release factor that accelerates release of karyopherin-cargo complexes after transport across NPC; potential Cdc28p substrate /NOTE=Nup1p; go_component: nuclear pore [goid GO:0005643] [evidence IDA] [pmid 2190694]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12411502]; go_function: structural molecule activity [goid GO:0005198] [evidence TAS] [pmid 9442897]; go_process: NLS-bearing substrate-nucleus import [goid GO:0006607] [evidence TAS] [pmid 9442897]; go_process: RNA-nucleus export [goid GO:0006405] [evidence IMP] [pmid 9442897]; go_process: mRNA-binding (hnRNP) protein-nucleus import [goid GO:0006609] [evidence TAS] [pmid 9442897]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence TAS] [pmid 9442897]; go_process: nuclear membrane organization and biogenesis [goid GO:0006998] [evidence IMP] [pmid 9442897]; go_process: nuclear pore organization and biogenesis [goid GO:0006999] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus export [goid GO:0006611] [evidence TAS] [pmid 9442897]; go_process: protein-nucleus import [goid GO:0006606] [evidence IMP] [pmid 9442897]; go_process: rRNA-nucleus export [goid GO:0006407] [evidence TAS] [pmid 9442897]; go_process: ribosomal protein-nucleus import [goid GO:0006610] [evidence TAS] [pmid 9442897]; go_process: snRNA-nucleus export [goid GO:0006408] [evidence TAS] [pmid 9442897]; go_process: snRNP protein-nucleus import [goid GO:0006608] [evidence TAS] [pmid 9442897]; go_process: tRNA-nucleus export [goid GO:0006409] [evidence TAS] [pmid 9442897] --- --- --- --- --- --- S0005624 // NUP1 SGDID:S0005624, Chr XV from 511178-507948, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017534 // cdna:Genscan chromosome:SGD1:XV:507948:511178:-1 // ensembl // 11 // --- /// GENEFINDER00000022611 // cdna:GeneFinder chromosome:SGD1:XV:507948:511154:-1 // ensembl // 11 // --- /// YOR098C // cdna:known chromosome:SGD1:XV:507948:511178:-1 gene:YOR098C // ensembl // 11 // --- --- No cerevisiae_gene 1.19800165032214 -1.22060756154963 -1.11967812972431 -1.1097922224211 1.20524123065016 Max fold change below threshold 4 1.22060756154963 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777154_at YFL038C.S1 Ras-like small GTPase, involved in the ER-to-Golgi step of the secretory pathway; complex formation with the Rab escort protein Mrs6p is required for prenylation of Ypt1p by protein geranylgeranyltransferase type II (Bet2p-Bet4p) 1.220030248 3576.10803222656 2926.32556152344 YPT1 6461 // protein complex assembly // inferred from direct assay /// 6888 // ER to Golgi transport // traceable author statement 139 // Golgi membrane // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // inferred from direct assay 3924 // GTPase activity // traceable author statement 3139.412109375 3830.177734375 3322.03833007813 2713.23901367188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL038C /GEN=YPT1 /DB_XREF=GI:14318480 /SEG=NC_001138:-55365,55985 /DEF=Ras-like small GTPase, involved in the ER-to-Golgi step of the secretory pathway; complex formation with the Rab escort protein Mrs6p is required for prenylation of Ypt1p by protein geranylgeranyltransferase type II (Bet2p-Bet4p) /NOTE=Ypt1p; go_component: Golgi membrane [goid GO:0000139] [evidence IDA] [pmid 10747087]; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 10747087]; go_function: GTPase activity [goid GO:0003924] [evidence TAS] [pmid 9433126]; go_process: ER to Golgi transport [goid GO:0006888] [evidence TAS] [pmid 9433126]; go_process: protein complex assembly [goid GO:0006461] [evidence IDA] [pmid 8603910] --- --- --- --- --- --- S0001856 // YPT1 SGDID:S0001856, Chr VI from 55985-55365, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018548 // cdna:GeneFinder chromosome:SGD1:VI:55365:55985:-1 // ensembl // 11 // --- /// GENSCAN00000023209 // cdna:Genscan chromosome:SGD1:VI:55365:55985:-1 // ensembl // 11 // --- /// YFL038C // cdna:known chromosome:SGD1:VI:55365:55985:-1 gene:YFL038C // ensembl // 11 // --- --- No cerevisiae_gene -1.08332052795885 1.220030248 -1.01341368958583 1.0581721081338 -1.15707171154316 Max fold change below threshold 4 1.220030248 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776151_at YGL236C.S1 Mitochondrial protein, forms a heterodimer complex with Mss1p that performs the 5-carboxymethylaminomethyl modification of the wobble uridine base in mitochondrial tRNAs; required for respiration in paromomycin-resistant 15S rRNA mutants 1.21993804359161 471.512237548828 449.982818603516 MTO1 6400 // tRNA modification // inferred from mutant phenotype /// 6412 // protein biosynthesis // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay --- 431.960083007813 416.059936523438 526.964538574219 468.005554199219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL236C /GEN=MTO1 /DB_XREF=GI:6321202 /SEG=NC_001139:-53756,55795 /DEF=Mitochondrial Translation Optimization; Strong similarity to E. coli GidA /NOTE=Mto1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 9774408]; go_function: molecular_function unknown [goid GO:0005554] [evidence IMP,ISS] [pmid 9774408]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP] [pmid 9774408] --- --- --- --- --- --- S0003205 // MTO1 SGDID:S0003205, Chr VII from 55796-53787, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000019173 // cdna:Genscan chromosome:SGD1:VII:53787:55796:-1 // ensembl // 10 // --- /// GENEFINDER00000021724 // cdna:GeneFinder chromosome:SGD1:VII:53787:55796:-1 // ensembl // 10 // --- /// YGL236C // cdna:known chromosome:SGD1:VII:53787:55796:-1 gene:YGL236C // ensembl // 10 // --- --- No cerevisiae_gene -1.12946077970594 -1.03821599988029 1.11939311318518 1.21993804359161 1.0834463011962 Max fold change below threshold 4 1.21993804359161 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769679_at YER053C.S1 Mitochondrial phosphate carrier, imports inorganic phosphate into mitochondria; functionally redundant with Mir1p but less abundant than Mir1p under normal conditions; expression is induced at high temperature 1.21946499036936 4563.80688476563 3950.00866699219 PIC2 6817 // phosphate transport // inferred from direct assay 5739 // mitochondrion // inferred from direct assay 5315 // inorganic phosphate transporter activity // inferred from direct assay 4267.994140625 5204.66943359375 3922.9443359375 3632.02319335938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER053C /GEN=PIC2 /DB_XREF=GI:6320894 /SEG=NC_001137:-258736,259638 /DEF=Mitochondrial phosphate carrier, imports inorganic phosphate into mitochondria; functionally redundant with Mir1p but less abundant than Mir1p under normal conditions; expression is induced at high temperature /NOTE=Pic2p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14756774]; go_function: inorganic phosphate transporter activity [goid GO:0005315] [evidence IDA] [pmid 14756774]; go_process: phosphate transport [goid GO:0006817] [evidence IDA] [pmid 14756774] --- --- --- --- scop // a.4.3.ARID domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; ARID-like; ARID domain // 1.39999997615814 S0000855 // span:264-286 // numtm:1 S0000855 // PIC2 SGDID:S0000855, Chr V from 259638-258736, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016847 // cdna:Genscan chromosome:SGD1:V:258736:259638:-1 // ensembl // 11 // --- /// YER053C // cdna:known chromosome:SGD1:V:258736:259638:-1 gene:YER053C // ensembl // 11 // --- --- No cerevisiae_gene -1.10933429043221 1.21946499036936 -1.12638168851997 -1.08795684443609 -1.17510101489121 Max fold change below threshold 4 1.21946499036936 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773035_at YJL008C.S1 Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo 1.21945741582682 1459.88287353516 1702.51245117188 CCT8 6457 // protein folding // traceable author statement /// 7010 // cytoskeleton organization and biogenesis // traceable author statement 5737 // cytoplasm // traceable author statement /// 5737 // cytoplasm // inferred from direct assay /// 5832 // chaperonin-containing T-complex // traceable author statement /// 5832 // chaperonin-containing T-complex // inferred from physical interaction /// 5856 // cytoskeleton // traceable author statement 51082 // unfolded protein binding // traceable author statement 1652.73486328125 1355.30346679688 1564.46228027344 1752.2900390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL008C /GEN=CCT8 /DB_XREF=GI:6322452 /SEG=NC_001142:-419872,421578 /DEF=Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo /NOTE=Cct8p; go_component: chaperonin-containing T-complex [goid GO:0005832] [evidence TAS] [pmid 8771707]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 8771707]; go_component: cytoskeleton [goid GO:0005856] [evidence TAS] [pmid 8771707]; go_function: chaperone activity [goid GO:0003754] [evidence TAS] [pmid 8771707]; go_process: cytoskeleton organization and biogenesis [goid GO:0007010] [evidence TAS] [pmid 8771707]; go_process: protein folding [goid GO:0006457] [evidence TAS] [pmid 8771707] --- --- --- --- --- --- S0003545 // CCT8 SGDID:S0003545, Chr X from 421578-419872, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024129 // cdna:Genscan chromosome:SGD1:X:419872:421578:-1 // ensembl // 11 // --- /// GENEFINDER00000024307 // cdna:GeneFinder chromosome:SGD1:X:419872:421578:-1 // ensembl // 11 // --- /// YJL008C // cdna:known chromosome:SGD1:X:419872:421578:-1 gene:YJL008C // ensembl // 11 // --- YJL009W // ensembl // 3 // Negative Strand Matching Probes No cerevisiae_gene 1.21544523592377 -1.21945741582682 1.04923841903852 -1.05642359302673 1.06023662838672 Max fold change below threshold 4 1.21945741582682 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773935_at YOR193W.S1 Peripheral peroxisomal membrane protein involved in controlling peroxisome size and number, interacts with homologous protein Pex25p 1.21928804188649 248.891677856445 260.609420776367 PEX27 7031 // peroxisome organization and biogenesis // inferred from mutant phenotype /// 7031 // peroxisome organization and biogenesis // inferred from sequence similarity /// 7031 // peroxisome organization and biogenesis // inferred from physical interaction 5778 // peroxisomal membrane // inferred from direct assay --- 234.858581542969 271.135406494141 226.64794921875 286.360260009766 0.000244141003349796 0.00195312988944352 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR193W /GEN=PEX27 /DB_XREF=GI:6324767 /SEG=NC_001147:+710446,711576 /DEF=Involved in peroxisome proliferation /NOTE=Pex27p; go_component: peroxisomal membrane [goid GO:0005778] [evidence IDA] [pmid 14517321]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence IMP,IPI,ISS] [pmid 14517321] --- --- --- --- --- --- S0005719 // PEX27 SGDID:S0005719, Chr XV from 710446-711576, Verified ORF // sgd // 11 // --- /// GENSCAN00000017612 // cdna:Genscan chromosome:SGD1:XV:710446:711576:1 // ensembl // 11 // --- /// GENEFINDER00000022774 // cdna:GeneFinder chromosome:SGD1:XV:710446:711576:1 // ensembl // 11 // --- /// YOR193W // cdna:known chromosome:SGD1:XV:710446:711576:1 gene:YOR193W // ensembl // 11 // --- --- No cerevisiae_gene 1.15097872280708 1.15446242037588 1.19985755951977 -1.036226369365 1.21928804188649 Max fold change below threshold 4 1.21928804188649 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769735_at YJR058C.S1 Small subunit of the clathrin-associated adaptor complex AP-2, which is involved in protein sorting at the plasma membrane; related to the sigma subunit of the mammalian plasma membrane clathrin-associated protein (AP-2) complex 1.2192737727459 1207.09222412109 1299.70385742188 APS2 16192 // vesicle-mediated transport // inferred from sequence similarity /// 16192 // vesicle-mediated transport // traceable author statement 30122 // AP-2 adaptor complex // inferred from sequence similarity --- 1192.82861328125 1372.43835449219 1041.74609375 1406.5791015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR058C /GEN=APS2 /DB_XREF=GI:6322518 /SEG=NC_001142:-544646,545089 /DEF=Related to the sigma subunit of the mammalian plasma membrane clathrin-associated protein (AP-2) complex /NOTE=Aps2p; go_component: AP-2 adaptor complex [goid GO:0030122] [evidence ISS] [pmid 10564262]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence ISS] [pmid 10564262] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 2.09999990463257 --- S0003819 // APS2 SGDID:S0003819, Chr X from 545089-544646, reverse complement, Verified ORF // sgd // 11 // --- /// YJR058C // cdna:known chromosome:SGD1:X:544646:545089:-1 gene:YJR058C // ensembl // 11 // --- --- No cerevisiae_gene 1.02589531432351 1.15057464183129 1.2192737727459 -1.14502816035277 1.17919631194398 Max fold change below threshold 4 1.2192737727459 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778299_at YPR173C.S1 AAA-type ATPase required for efficient late endosome to vacuole transport; catalyzes the release of an endosomal membrane-associated class E VPS protein complex; cytoplasmic protein that is also associated with an endosomal compartment 1.21917045979449 477.734039306641 505.167984008789 VPS4 45053 // protein-Golgi retention // inferred from mutant phenotype /// 45324 // late endosome to vacuole transport // inferred from mutant phenotype /// 45324 // late endosome to vacuole transport // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay 16887 // ATPase activity // inferred from direct assay 497.945037841797 408.429382324219 547.038696289063 512.390930175781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR173C /GEN=VPS4 /DB_XREF=GI:6325431 /SEG=NC_001148:-886518,887831 /DEF=Defective in vacuolar protein sorting; homologous to mouse SKD1 and to human hVPS4 /NOTE=Vps4p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11914276]; go_function: ATPase activity [goid GO:0016887] [evidence IDA] [pmid 9606181]; go_process: late endosome to vacuole transport [goid GO:0045324] [evidence IMP,IPI] [pmid 9606181]; go_process: protein-Golgi retention [goid GO:0045053] [evidence IMP] [pmid 8649377] --- --- --- --- --- --- S0006377 // VPS4 SGDID:S0006377, Chr XVI from 887833-886520, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017317 // cdna:Genscan chromosome:SGD1:XVI:886520:887833:-1 // ensembl // 11 // --- /// GENEFINDER00000020877 // cdna:GeneFinder chromosome:SGD1:XVI:886520:887833:-1 // ensembl // 11 // --- /// YPR173C // cdna:known chromosome:SGD1:XVI:886520:887833:-1 gene:YPR173C // ensembl // 11 // --- --- No cerevisiae_gene 1.11482979087084 -1.21917045979449 1.00905326046141 1.09859252470925 1.02901101775528 Max fold change below threshold 4 1.21917045979449 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774147_at YPL009C.S1 Hypothetical protein 1.21892655540085 551.814056396484 485.312347412109 --- --- 5737 // cytoplasm // inferred from direct assay --- 473.797698974609 526.103515625 577.524597167969 496.826995849609 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL009C /GEN=RET3 /DB_XREF=GI:6325248 /SEG=NC_001148:-535815,538931 /DEF=Hypothetical ORF /NOTE=Ypl009cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.2.3.Chaperone J-domain // All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain // 5.09999990463257 --- S0005930 // YPL009C SGDID:S0005930, Chr XVI from 538933-535817, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000020848 // cdna:GeneFinder chromosome:SGD1:XVI:535817:538933:-1 // ensembl // 11 // --- /// YPL009C // cdna:known chromosome:SGD1:XVI:535817:538933:-1 gene:YPL009C // ensembl // 11 // --- --- No cerevisiae_gene -1.04009113976559 1.11039694106491 1.10000223504665 1.21892655540085 1.04860575921926 Max fold change below threshold 4 1.21892655540085 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779933_at YBR109C.S1 Calmodulin; Ca++ binding protein that regulates Ca++ independent processes (mitosis, bud growth, actin organization, endocytosis, etc.) and Ca++ dependent processes (stress-activated pathways), targets include Nuf1p, Myo2p and calcineurin 1.21885859190937 2969.51062011719 3260.97717285156 CMD1 6897 // endocytosis // inferred from mutant phenotype /// 7010 // cytoskeleton organization and biogenesis // inferred from mutant phenotype /// 7067 // mitosis // traceable author statement /// 7114 // cell budding // inferred from mutant phenotype /// 42144 // vacuole fusion, non-autophagic // inferred from mutant phenotype 131 // incipient bud site // inferred from direct assay /// 5737 // cytoplasm // traceable author statement /// 5823 // central plaque of spindle pole body // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay 5509 // calcium ion binding // inferred from direct assay /// 5515 // protein binding // traceable author statement /// 48306 // calcium-dependent protein binding // traceable author statement 3279.60864257813 2690.72119140625 3248.30004882813 3242.345703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR109C /GEN=CMD1 /DB_XREF=GI:6319585 /SEG=NC_001134:-457875,458318 /DEF=master regulator of calcium mediated signalling /NOTE=Cmd1p; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 1639847]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 1639847]; go_component: central plaque of spindle pole body [goid GO:0005823] [evidence IDA] [pmid 8601600]; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 8310294]; go_component: incipient bud site [goid GO:0000131] [evidence IDA] [pmid 1639847]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 1639847]; go_function: calcium ion binding [goid GO:0005509] [evidence TAS] [pmid 8310294]; go_process: budding [goid GO:0007114] [evidence IMP] [pmid 8310294]; go_process: cytoskeleton organization and biogenesis [goid GO:0007010] [evidence IMP] [pmid 8310294]; go_process: mitosis [goid GO:0007067] [evidence TAS] [pmid 1505006] --- --- --- --- --- --- S0000313 // CMD1 SGDID:S0000313, Chr II from 458356-457913, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021227 // cdna:Genscan chromosome:SGD1:II:457913:458356:-1 // ensembl // 11 // --- /// GENEFINDER00000022276 // cdna:GeneFinder chromosome:SGD1:II:457913:458356:-1 // ensembl // 11 // --- /// YBR109C // cdna:known chromosome:SGD1:II:457913:458356:-1 gene:YBR109C // ensembl // 11 // --- --- No cerevisiae_gene 1.08562214566111 -1.21885859190937 1.03918075983991 -1.0096384549701 -1.01149258680751 Max fold change below threshold 4 1.21885859190937 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774912_at YOR231W.S1 Mitogen-activated kinase kinase involved in protein kinase C signaling pathway that controls cell integrity; upon activation by Bck1p phosphorylates downstream target, Slt2p; functionally redundant with Mkk2p 1.21871863527002 561.373870849609 657.021026611328 MKK1 6468 // protein amino acid phosphorylation // inferred from sequence similarity /// 7165 // signal transduction // inferred from mutant phenotype 5934 // bud tip // inferred from direct assay 4708 // MAP kinase kinase activity // inferred from sequence similarity 610.761840820313 522.599304199219 600.1484375 703.280212402344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR231W /GEN=MKK1 /DB_XREF=GI:6324805 /SEG=NC_001147:+772601,774127 /DEF=Mitogen-activated kinase-kinase involved in protein kinase C pathway /NOTE=Mkk1p; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 12361575]; go_function: MAP kinase kinase activity [goid GO:0004708] [evidence ISS] [pmid 8386320]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence ISS] [pmid 8386320]; go_process: signal transduction [goid GO:0007165] [evidence IMP] [pmid 8386320] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 2.0E-62 /// hanks // 2.1.8 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DdMLCK // 8.0E-69 --- --- S0005757 // MKK1 SGDID:S0005757, Chr XV from 772601-774127, Verified ORF // sgd // 11 // --- /// GENSCAN00000017653 // cdna:Genscan chromosome:SGD1:XV:772601:774127:1 // ensembl // 11 // --- /// GENEFINDER00000022706 // cdna:GeneFinder chromosome:SGD1:XV:773024:774127:1 // ensembl // 11 // --- /// YOR231W // cdna:known chromosome:SGD1:XV:772601:774127:1 gene:YOR231W // ensembl // 11 // --- --- No cerevisiae_gene 1.01261631931016 -1.16870006506454 -1.21871863527002 -1.01768463042997 1.15148027495917 Max fold change below threshold 4 1.21871863527002 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771540_at YNL121C.S1 Translocase of Outer Mitochondrial membrane; 70 kDa mitochondrial specialized import receptor of the outer membrane 1.21863065203541 1819.16955566406 2122.31091308594 TOM70 30150 // mitochondrial matrix protein import // traceable author statement /// 45039 // mitochondrial inner membrane protein import // traceable author statement 5742 // mitochondrial outer membrane translocase complex // traceable author statement 8565 // protein transporter activity // traceable author statement /// 8565 // protein transporter activity // inferred from physical interaction 2075.41918945313 1703.07482910156 1935.26428222656 2169.20263671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL121C /GEN=TOM70 /DB_XREF=GI:6324208 /SEG=NC_001146:-398684,400537 /DEF=Translocase of Outer Mitochondrial membrane /NOTE=Tom70p; go_component: mitochondrial outer membrane translocase complex [goid GO:0005742] [evidence TAS] [pmid 9774667]; go_function: protein transporter activity [goid GO:0008565] [evidence IPI] [pmid 9252394]; go_function: protein transporter activity [goid GO:0008565] [evidence TAS] [pmid 9774667]; go_process: mitochondrial inner membrane protein import [goid GO:0045039] [evidence TAS] [pmid 12581629]; go_process: mitochondrial matrix protein import [goid GO:0030150] [evidence TAS] [pmid 12581629] --- --- --- --- scop // a.4.5.Arginine repressor (ArgR), N-terminal DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Arginine repressor (ArgR), N-terminal DNA-binding domain // 1.70000004768372 S0005065 // span:12-29 // numtm:1 S0005065 // TOM70 SGDID:S0005065, Chr XIV from 400537-398684, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019936 // cdna:Genscan chromosome:SGD1:XIV:398684:400078:-1 // ensembl // 11 // --- /// GENEFINDER00000020465 // cdna:GeneFinder chromosome:SGD1:XIV:398684:400537:-1 // ensembl // 11 // --- /// YNL121C // cdna:known chromosome:SGD1:XIV:398684:400537:-1 gene:YNL121C // ensembl // 11 // --- --- No cerevisiae_gene 1.11539508031898 -1.21863065203541 -1.20344882553233 -1.07242158526551 1.04518771327846 Max fold change below threshold 4 1.21863065203541 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779873_at YMR064W.S1 Protein required for expression of the mitochondrial OLI1 gene encoding subunit 9 of F1-F0 ATP synthase 1.21849381252792 1189.01477050781 1069.67785644531 AEP1 6412 // protein biosynthesis // traceable author statement 5739 // mitochondrion // inferred from direct assay --- 1045.37048339844 1242.61828613281 1135.41125488281 1093.98522949219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR064W /GEN=AEP1 /DB_XREF=GI:6323709 /SEG=NC_001145:+397902,399458 /DEF=Protein required for expression of the mitochondrial OLI1 gene encoding subunit 9 of F1-F0 ATP synthase /NOTE=Aep1p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 8811190]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 8811190] --- --- --- hanks // 1.8.4 // AGC group; AGC VIII Flowering plant PVPK1 homologs; ATPK5 // 0.81 --- --- S0004668 // AEP1 SGDID:S0004668, Chr XIII from 397902-399458, Verified ORF // sgd // 11 // --- /// GENSCAN00000018766 // cdna:Genscan chromosome:SGD1:XIII:397902:399458:1 // ensembl // 11 // --- /// YMR064W // cdna:known chromosome:SGD1:XIII:397902:399458:1 gene:YMR064W // ensembl // 11 // --- --- No cerevisiae_gene 1.16132349721352 1.18868698310013 1.21849381252792 1.0861328810353 1.04650480080106 Max fold change below threshold 4 1.21849381252792 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776083_at YNR006W.S1 Endosomal protein that forms a complex with Hse1p; required for recycling Golgi proteins, forming lumenal membranes and sorting ubiquitinated proteins destined for degradation; has Ubiquitin Interaction Motifs which bind ubiquitin (Ubi4p) 1.21830312506619 1879.28656005859 1569.29229736328 VPS27 6605 // protein targeting // traceable author statement /// 16197 // endosome transport // inferred from mutant phenotype /// 45053 // protein-Golgi retention // inferred from mutant phenotype 5768 // endosome // inferred from direct assay 5515 // protein binding // inferred from direct assay 1561.87707519531 1902.83972167969 1855.7333984375 1576.70751953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR006W /GEN=VPS27 /DB_XREF=GI:6324332 /SEG=NC_001146:+636985,638853 /DEF=hydrophilic protein; has cysteine rich putative zinc finger esential for function /NOTE=Vps27p; go_component: endosome [goid GO:0005768] [evidence IDA] [pmid 12055639]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 12055639]; go_process: protein targeting [goid GO:0006605] [evidence TAS] [pmid 12970172]; go_process: protein-Golgi retention [goid GO:0045053] [evidence IMP] [pmid 8649377] --- --- --- --- --- --- S0005289 // VPS27 SGDID:S0005289, Chr XIV from 636986-638854, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020500 // cdna:GeneFinder chromosome:SGD1:XIV:637274:638854:1 // ensembl // 11 // --- /// GENSCAN00000020041 // cdna:Genscan chromosome:SGD1:XIV:637982:638854:1 // ensembl // 11 // --- /// YNR006W // cdna:known chromosome:SGD1:XIV:636986:638854:1 gene:YNR006W // ensembl // 11 // --- --- No cerevisiae_gene -1.10506301716847 1.21830312506619 -1.0146545206375 1.18814305421919 1.00949526987204 Max fold change below threshold 4 1.21830312506619 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775902_at YMR002W.S1 Hypothetical protein 1.2175542962864 4670.48791503906 4570.78881835938 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 4969.12890625 5259.73779296875 4081.23803710938 4172.44873046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR002W /GEN=CDC5 /DB_XREF=GI:6323644 /SEG=NC_001145:+272193,272663 /DEF=Hypothetical ORF /NOTE=Ymr002wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004604 // YMR002W SGDID:S0004604, Chr XIII from 272193-272663, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018720 // cdna:Genscan chromosome:SGD1:XIII:272265:272663:1 // ensembl // 9 // --- /// GENEFINDER00000021895 // cdna:GeneFinder chromosome:SGD1:XIII:272265:272663:1 // ensembl // 9 // --- /// YMR002W // cdna:known chromosome:SGD1:XIII:272193:272663:1 gene:YMR002W // ensembl // 11 // --- --- No cerevisiae_gene 1.02688592143524 1.05848286333511 -1.1453324620947 -1.2175542962864 -1.1909382780341 Max fold change below threshold 4 1.2175542962864 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776799_at YPL104W.S1 Mitochondrial aspartyl-tRNA synthetase, required for acylation of aspartyl-tRNA; yeast and bacterial aspartyl-, asparaginyl-, and lysyl-tRNA synthetases contain regions with high sequence similarity, suggesting a common ancestral gene 1.21743183140242 581.584686279297 569.109954833984 MSD1 6412 // protein biosynthesis // inferred from mutant phenotype /// 6412 // protein biosynthesis // inferred from sequence similarity 5739 // mitochondrion // inferred from sequence similarity /// 5739 // mitochondrion // inferred from direct assay /// 5739 // mitochondrion // inferred from mutant phenotype 4815 // aspartate-tRNA ligase activity // inferred from sequence similarity /// 4815 // aspartate-tRNA ligase activity // inferred from mutant phenotype 543.613098144531 560.771301269531 602.398071289063 594.606811523438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL104W /GEN=MSD1 /DB_XREF=GI:6325153 /SEG=NC_001148:+355695,357671 /DEF=Aspartyl-tRNA synthetase, mitochondrial /NOTE=Msd1p; go_component: mitochondrion [goid GO:0005739] [evidence IMP,ISS] [pmid 2668951]; go_function: aspartate-tRNA ligase activity [goid GO:0004815] [evidence IMP,ISS] [pmid 2668951]; go_process: protein biosynthesis [goid GO:0006412] [evidence IMP,ISS] [pmid 2668951] --- --- --- --- scop // a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain // All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain // 2.5 --- S0006025 // MSD1 SGDID:S0006025, Chr XVI from 355697-357673, Verified ORF // sgd // 11 // --- /// GENSCAN00000017111 // cdna:Genscan chromosome:SGD1:XVI:355697:357673:1 // ensembl // 11 // --- /// GENEFINDER00000020973 // cdna:GeneFinder chromosome:SGD1:XVI:355697:357673:1 // ensembl // 11 // --- /// YPL104W // cdna:known chromosome:SGD1:XVI:355697:357673:1 gene:YPL104W // ensembl // 11 // --- --- No cerevisiae_gene -1.10519307127237 1.03156326288598 1.21743183140242 1.10813752160347 1.09380515950215 Max fold change below threshold 4 1.21743183140242 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775467_at YPL028W.S1 Acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase), cytosolic enzyme that transfers an acetyl group from one acetyl-CoA molecule to another, forming acetoacetyl-CoA; involved in the first step in mevalonate biosynthesis 1.21662188957088 4260.060546875 4625.3701171875 ERG10 6696 // ergosterol biosynthesis // traceable author statement 5829 // cytosol // traceable author statement 3985 // acetyl-CoA C-acetyltransferase activity // inferred from direct assay 4828.04931640625 4009.65478515625 4510.46630859375 4422.69091796875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL028W /GEN=ERG10 /DB_XREF=GI:6325229 /SEG=NC_001148:+498092,499288 /DEF=Acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase), cytosolic enzyme that transfers an acetyl group from one acetyl-CoA molecule to another, forming acetoacetyl-CoA; involved in the first step in mevalonate biosynthesis /NOTE=Erg10p; go_component: cytosol [goid GO:0005829] [evidence TAS]; go_function: acetyl-CoA C-acetyltransferase activity [goid GO:0003985] [evidence IDA] [pmid 7989303]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence TAS] --- --- --- --- --- --- S0005949 // ERG10 SGDID:S0005949, Chr XVI from 498094-499290, Verified ORF // sgd // 10 // --- /// GENSCAN00000017166 // cdna:Genscan chromosome:SGD1:XVI:498094:499290:1 // ensembl // 10 // --- /// GENEFINDER00000020901 // cdna:GeneFinder chromosome:SGD1:XVI:498094:499290:1 // ensembl // 10 // --- /// YPL028W // cdna:known chromosome:SGD1:XVI:498094:499290:1 gene:YPL028W // ensembl // 10 // --- --- No cerevisiae_gene -1.03674287775941 -1.20410598295886 -1.21662188957088 -1.07041023833997 -1.09165424533525 Max fold change below threshold 4 1.21662188957088 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774383_at YDL084W.S1 Component of the TREX complex required for nuclear mRNA export; DEAD-box RNA helicase involved in early and late steps of spliceosome assembly; homolog of the human splicing factor hUAP56 1.21607273518334 3406.0439453125 3508.20520019531 SUB2 370 // U2-type nuclear mRNA branch site recognition // traceable author statement /// 398 // nuclear mRNA splicing, via spliceosome // inferred from mutant phenotype /// 6406 // mRNA-nucleus export // inferred from mutant phenotype /// 6406 // mRNA-nucleus export // inferred from direct assay /// 6406 // mRNA-nucleus export // inferred from physical interaction 346 // transcription export complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay /// 5681 // spliceosome complex // traceable author statement 3723 // RNA binding // inferred from physical interaction /// 4004 // ATP-dependent RNA helicase activity // traceable author statement /// 5515 // protein binding // inferred from physical interaction /// 31202 // RNA splicing factor activity, transesterification mechanism // inferred from sequence similarity 3679.3955078125 3786.4501953125 3025.6376953125 3337.01489257813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL084W /GEN=SUB2 /DB_XREF=GI:6320119 /SEG=NC_001136:+305237,306577 /DEF=Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1 /NOTE=Sub2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_component: spliceosome complex [goid GO:0005681] [evidence TAS] [pmid 9476892]; go_component: transcription export complex [goid GO:0000346] [evidence IPI] [pmid 11979277]; go_function: ATP-dependent RNA helicase activity [goid GO:0004004] [evidence TAS] [pmid 9476892]; go_function: pre-mRNA splicing factor activity [goid GO:0008248] [evidence TAS] [pmid 9476892]; go_function: protein binding [goid GO:0005515] [evidence IPI] [pmid 12411502]; go_process: U2-type nuclear mRNA branch site recognition [goid GO:0000370] [evidence TAS]; go_process: mRNA-nucleus export [goid GO:0006406] [evidence IDA,IMP,IPI] [pmid 11675790] --- --- --- --- scop // a.3.1.monodomain cytochrome c // All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c // 5.40000009536743 --- S0002242 // SUB2 SGDID:S0002242, Chr IV from 305237-306577, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023823 // cdna:GeneFinder chromosome:SGD1:IV:305237:306577:1 // ensembl // 11 // --- /// GENSCAN00000025039 // cdna:Genscan chromosome:SGD1:IV:305237:306577:1 // ensembl // 11 // --- /// YDL084W // cdna:known chromosome:SGD1:IV:305237:306577:1 gene:YDL084W // ensembl // 11 // --- --- No cerevisiae_gene 1.13210416643996 1.02909572707601 -1.17486142714739 -1.21607273518334 -1.10260086522115 Max fold change below threshold 4 1.21607273518334 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775802_at YNL094W.S1 Protein of unknown function, interacts with Rvs161p and Rvs167p; computational analysis of protein-protein interactions in large-scale studies suggests a possible role in actin filament organization 1.21567800127351 555.872375488281 590.567443847656 APP1 7015 // actin filament organization // RCA /// 30036 // actin cytoskeleton organization and biogenesis // inferred from physical interaction 15629 // actin cytoskeleton // inferred from physical interaction /// 30479 // actin cortical patch // inferred from direct assay --- 538.985778808594 482.122497558594 629.622253417969 642.149108886719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL094W /GEN=APP1 /DB_XREF=GI:6324235 /SEG=NC_001146:+447611,449374 /DEF=Protein of unknown function, interacts with Rvs161p and Rvs167p; computational analysis of protein-protein interactions in large-scale studies suggests a possible role in actin filament organization /NOTE=App1p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 11489916]; go_component: actin cytoskeleton [goid GO:0015629] [evidence IPI] [pmid 10992286]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence IPI] [pmid 10992286]; go_process: actin filament organization [goid GO:0007015] [evidence TAS] [pmid 14566057] --- --- --- --- --- --- S0005038 // APP1 SGDID:S0005038, Chr XIV from 447611-449374, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019958 // cdna:Genscan chromosome:SGD1:XIV:447611:449374:1 // ensembl // 11 // --- /// GENEFINDER00000020597 // cdna:GeneFinder chromosome:SGD1:XIV:447611:449374:1 // ensembl // 11 // --- /// YNL094W // cdna:known chromosome:SGD1:XIV:447611:449374:1 gene:YNL094W // ensembl // 11 // --- --- No cerevisiae_gene 1.09541722593444 -1.11794363784712 1.21567800127351 1.16816116152401 1.1914026939749 Max fold change below threshold 4 1.21567800127351 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771393_at YFR039C.S1 Hypothetical protein 1.21553642712063 900.441040039063 829.739929199219 --- --- --- --- 811.994506835938 953.075378417969 847.806701660156 847.4853515625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR039C /GEN=RSC8 /DB_XREF=GI:14318564 /SEG=NC_001138:-231999,233531 /DEF=Hypothetical ORF /NOTE=Yfr039cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001935 // YFR039C SGDID:S0001935, Chr VI from 233531-231999, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000018576 // cdna:GeneFinder chromosome:SGD1:VI:231999:233531:-1 // ensembl // 11 // --- /// GENSCAN00000023277 // cdna:Genscan chromosome:SGD1:VI:231999:232784:-1 // ensembl // 11 // --- /// YFR039C // cdna:known chromosome:SGD1:VI:231999:233531:-1 gene:YFR039C // ensembl // 11 // --- --- No cerevisiae_gene -1.21553642712063 1.17374609113031 -1.13650845992322 1.04410398656977 1.04370823254071 Max fold change below threshold 4 1.21553642712063 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774396_at YER020W.S1 Nucleotide binding alpha subunit of the heterotrimeric G protein that interacts with the receptor Gpr1p, has signaling role in response to nutrients; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery 1.21440840130413 2781.67163085938 2267.89208984375 GPA2 1302 // replicative cell aging // inferred from mutant phenotype /// 7124 // pseudohyphal growth // inferred from mutant phenotype /// 7165 // signal transduction // inferred from mutant phenotype /// 30437 // sporulation (sensu Fungi) // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 3924 // GTPase activity // traceable author statement 2395.04296875 2908.56030273438 2654.78295898438 2140.7412109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER020W /GEN=GPA2 /DB_XREF=GI:6320858 /SEG=NC_001137:+195167,196516 /DEF=Nucleotide binding alpha subunit of the heterotrimeric G protein that interacts with the receptor Gpr1p, has signaling role in response to nutrients; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery /NOTE=Gpa2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: GTPase activity [goid GO:0003924] [evidence TAS] [pmid 1317171]; go_process: cell growth and/or maintenance [goid GO:0008151] [evidence IMP] [pmid 9252333]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 10454558]; go_process: signal transduction [goid GO:0007165] [evidence IMP] [pmid 10454558]; go_process: sporulation (sensu Saccharomyces) [goid GO:0007151] [evidence IMP] [pmid 10454558] --- --- --- --- --- --- S0000822 // GPA2 SGDID:S0000822, Chr V from 195167-196516, Verified ORF // sgd // 11 // --- /// GENSCAN00000016822 // cdna:Genscan chromosome:SGD1:V:195167:196516:1 // ensembl // 11 // --- /// GENEFINDER00000019578 // cdna:GeneFinder chromosome:SGD1:V:195167:196516:1 // ensembl // 11 // --- /// YER020W // cdna:known chromosome:SGD1:V:195167:196516:1 gene:YER020W // ensembl // 11 // --- --- No cerevisiae_gene -1.06253389433707 1.21440840130413 -1.02019286136131 1.10844898969388 -1.11879145247133 Max fold change below threshold 4 1.21440840130413 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775494_at YER004W.S1 The authentic, non-tagged protein was localized to the mitochondria 1.21430700740117 1748.34893798828 1607.65319824219 --- --- 5739 // mitochondrion // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay --- 1614.20776367188 1536.55407714844 1960.14379882813 1601.0986328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER004W /GEN=PMI40 /DB_XREF=GI:6320840 /SEG=NC_001137:+159579,160274 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Yer004wp --- --- --- --- --- --- S0000806 // FMP52 SGDID:S0000806, Chr V from 159579-160274, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016806 // cdna:Genscan chromosome:SGD1:V:159579:160274:1 // ensembl // 11 // --- /// GENEFINDER00000019597 // cdna:GeneFinder chromosome:SGD1:V:159579:160274:1 // ensembl // 11 // --- /// YER004W // cdna:known chromosome:SGD1:V:159579:160274:1 gene:YER004W // ensembl // 11 // --- --- No cerevisiae_gene -1.14404059566705 -1.05053755522067 -1.0312843538145 1.21430700740117 -1.00818758481877 Max fold change below threshold 4 1.21430700740117 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777548_at YGL194C.S1 Histone deacetylase required for gene activation via specific deacetylation of lysines in H3 and H4 histone tails; subunit of the Set3 complex, a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity 1.21415407397074 169.007675170898 170.020568847656 HOS2 6325 // establishment and/or maintenance of chromatin architecture // inferred from sequence similarity /// 6355 // regulation of transcription, DNA-dependent // inferred from sequence similarity /// 16575 // histone deacetylation // inferred from direct assay /// 16575 // histone deacetylation // inferred from physical interaction /// 45835 // negative regulation of meiosis // inferred from mutant phenotype 118 // histone deacetylase complex // traceable author statement /// 118 // histone deacetylase complex // inferred from physical interaction 17136 // NAD-dependent histone deacetylase activity // inferred from direct assay /// 17136 // NAD-dependent histone deacetylase activity // inferred from physical interaction /// 45129 // NAD-independent histone deacetylase activity // inferred from direct assay /// 45129 // NAD-independent histone deacetylase activity // inferred from physical interaction 153.576095581055 178.479843139648 159.535507202148 186.465042114258 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL194C /GEN=HOS2 /DB_XREF=GI:6321244 /SEG=NC_001139:-140372,141730 /DEF=Histone deacetylase required for gene activation via specific deacetylation of lysines in H3 and H4 histone tails; subunit of the Set3 complex, a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity /NOTE=Hos2p; go_component: histone deacetylase complex [goid GO:0000118] [evidence TAS] [pmid 10384304]; go_component: histone deacetylase complex [goid GO:0000118] [evidence IPI] [pmid 11711434]; go_function: NAD-dependent histone deacetylase activity [goid GO:0017136] [evidence IDA,IPI] [pmid 11711434]; go_function: NAD-independent histone deacetylase activity [goid GO:0045129] [evidence IDA,IPI] [pmid 11711434]; go_process: establishment and/or maintenance of chromatin architecture [goid GO:0006325] [evidence ISS] [pmid 10384304]; go_process: histone deacetylation [goid GO:0016575] [evidence IDA,IPI] [pmid 11711434]; go_process: negative regulation of meiosis [goid GO:0045835] [evidence IMP] [pmid 11711434]; go_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence ISS] [pmid 10384304] --- --- --- --- --- --- S0003162 // HOS2 SGDID:S0003162, Chr VII from 141732-140374, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019204 // cdna:Genscan chromosome:SGD1:VII:140374:141732:-1 // ensembl // 11 // --- /// GENEFINDER00000021497 // cdna:GeneFinder chromosome:SGD1:VII:140374:141732:-1 // ensembl // 11 // --- /// YGL194C // cdna:known chromosome:SGD1:VII:140374:141732:-1 gene:YGL194C // ensembl // 11 // --- --- No cerevisiae_gene -1.07340366239236 1.16215900960609 1.16097795844771 1.03880429176524 1.21415407397074 Max fold change below threshold 4 1.21415407397074 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777387_at YHR098C.S1 Member of the Sec24p family; forms a complex, with Sec23p, that is involved in sorting of Pma1p into COPII vesicles; peripheral ER membrane protein; potential Cdc28p substrate 1.21390595175848 742.471130371094 805.893157958984 SFB3 6888 // ER to Golgi transport // inferred from genetic interaction /// 6888 // ER to Golgi transport // inferred from mutant phenotype 300 // peripheral to membrane of membrane fraction // inferred from direct assay /// 300 // peripheral to membrane of membrane fraction // inferred from physical interaction /// 5783 // endoplasmic reticulum // inferred from direct assay /// 30127 // COPII vesicle coat // inferred from genetic interaction /// 30127 // COPII vesicle coat // inferred from physical interaction /// 30127 // COPII vesicle coat // inferred from mutant phenotype /// 30127 // COPII vesicle coat // inferred from sequence similarity --- 768.077392578125 720.719482421875 764.222778320313 843.708923339844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR098C /GEN=SFB3 /DB_XREF=GI:6321890 /SEG=NC_001140:-299147,301936 /DEF=Member of the Sec24p family; forms a complex, with Sec23p, that is involved in sorting of Pma1p into COPII vesicles; peripheral ER membrane protein; potential Cdc28p substrate /NOTE=Sfb3p; go_component: COPII vesicle coat [goid GO:0030127] [evidence IGI,IMP,IPI,ISS] [pmid 10330397]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 10330397]; go_component: peripheral to membrane of membrane fraction [goid GO:0000300] [evidence IDA,IPI] [pmid 10330397]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IGI,IMP] [pmid 10330397] --- --- --- --- --- --- S0001140 // SFB3 SGDID:S0001140, Chr VIII from 301936-299147, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016637 // cdna:Genscan chromosome:SGD1:VIII:299147:301936:-1 // ensembl // 11 // --- /// GENEFINDER00000020110 // cdna:GeneFinder chromosome:SGD1:VIII:299147:301678:-1 // ensembl // 11 // --- /// YHR098C // cdna:known chromosome:SGD1:VIII:299147:301936:-1 gene:YHR098C // ensembl // 11 // --- --- No cerevisiae_gene 1.21390595175848 -1.0657092132394 -1.01585441587229 -1.00504383586457 1.09846863283901 Max fold change below threshold 4 1.21390595175848 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778107_at YJL143W.S1 Essential constituent of the mitochondrial inner membrane presequence translocase; interacts with Pam18p to recruit the presequence translocase-associated motor (PAM complex) and also required for protein sorting during import 1.2123686347697 1372.85668945313 1314.22808837891 TIM17 30150 // mitochondrial matrix protein import // inferred from mutant phenotype /// 30150 // mitochondrial matrix protein import // inferred from direct assay 5744 // mitochondrial inner membrane presequence translocase complex // traceable author statement /// 5744 // mitochondrial inner membrane presequence translocase complex // inferred from direct assay 8565 // protein transporter activity // traceable author statement 1271.01953125 1223.88549804688 1521.82788085938 1357.43664550781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL143W /GEN=TIM17 /DB_XREF=GI:6322318 /SEG=NC_001142:+147019,147495 /DEF=Mitochondrial inner membrane protein involved in protein import /NOTE=Tim17p; go_component: mitochondrial inner membrane presequence translocase complex [goid GO:0005744] [evidence TAS] [pmid 10744987]; go_function: protein transporter activity [goid GO:0008565] [evidence TAS] [pmid 10744987]; go_process: mitochondrial matrix protein import [goid GO:0030150] [evidence IMP] [pmid 11344168] --- --- --- --- --- S0003679 // span:13-35,89-108,115-137 // numtm:3 S0003679 // TIM17 SGDID:S0003679, Chr X from 147019-147495, Verified ORF // sgd // 11 // --- /// GENSCAN00000024029 // cdna:Genscan chromosome:SGD1:X:147019:147495:1 // ensembl // 11 // --- /// YJL143W // cdna:known chromosome:SGD1:X:147019:147495:1 gene:YJL143W // ensembl // 11 // --- GENEFINDER00000024513 // ensembl // 8 // Negative Strand Matching Probes No cerevisiae_gene 1.2123686347697 -1.03851179973808 1.08973739631386 1.19732847799964 1.06799039049606 Max fold change below threshold 4 1.2123686347697 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773866_at YOR158W.S1 Mitochondrial ribosomal protein of the small subunit; PET123 exhibits genetic interactions with PET122, which encodes a COX3 mRNA-specific translational activator 1.21235420238528 1760.13952636719 1585.66284179688 PET123 6412 // protein biosynthesis // traceable author statement /// 6412 // protein biosynthesis // inferred from direct assay 5763 // mitochondrial small ribosomal subunit // traceable author statement /// 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // traceable author statement /// 3735 // structural constituent of ribosome // inferred from direct assay 1593.64855957031 1932.06652832031 1588.21252441406 1577.67712402344 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR158W /GEN=PET123 /DB_XREF=GI:6324732 /SEG=NC_001147:+632164,633120 /DEF=Mitochondrial ribosomal protein of the small subunit; PET123 exhibits genetic interactions with PET122, which encodes a COX3 mRNA-specific translational activator /NOTE=Pet123p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 11278769]; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 11278769]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 11278769]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0005684 // PET123 SGDID:S0005684, Chr XV from 632164-633120, Verified ORF // sgd // 11 // --- /// GENSCAN00000017582 // cdna:Genscan chromosome:SGD1:XV:632164:633120:1 // ensembl // 11 // --- /// YOR158W // cdna:known chromosome:SGD1:XV:632164:633120:1 gene:YOR158W // ensembl // 11 // --- --- No cerevisiae_gene 1.07395476841395 1.21235420238528 1.08866105065358 -1.0034227378721 -1.01012338665731 Max fold change below threshold 4 1.21235420238528 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774221_at YNL125C.S1 Protein with similarity to monocarboxylate permeases, appears not to be involved in transport of monocarboxylates such as lactate, pyruvate or acetate across the plasma membrane 1.21228487389587 1269.98919677734 1342.49639892578 ESBP6 6810 // transport // inferred from sequence similarity 5739 // mitochondrion // inferred from direct assay /// 16020 // membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity /// 8028 // monocarboxylic acid transporter activity // inferred from genetic interaction /// 8028 // monocarboxylic acid transporter activity // inferred from mutant phenotype 1235.11828613281 1087.50659179688 1452.47180175781 1449.87451171875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL125C /GEN=ESBP6 /DB_XREF=GI:6324204 /SEG=NC_001146:-390146,392167 /DEF=Protein with similarity to monocarboxylate permeases, appears not to be involved in transport of monocarboxylates such as lactate, pyruvate or acetate across the plasma membrane /NOTE=Esbp6p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 11536335]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11536335]; go_function: monocarboxylic acid transporter activity [goid GO:0008028] [evidence IGI,IMP] [pmid 11536335]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 11536335]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 11536335] --- --- --- --- scop // a.3.1.Quinohemoprotein amine dehydrogenase A chain, domains 1 an // All alpha proteins; Cytochrome c; Cytochrome c; Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 // 0.319999992847443 S0005069 // span:211-233,254-273,278-300,313-335,339-361,374-393,427-449,488-510,514-536,549-571,586-605 // numtm:11 S0005069 // ESBP6 SGDID:S0005069, Chr XIV from 392167-390146, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019933 // cdna:Genscan chromosome:SGD1:XIV:390146:392167:-1 // ensembl // 11 // --- /// GENEFINDER00000020641 // cdna:GeneFinder chromosome:SGD1:XIV:390146:392167:-1 // ensembl // 11 // --- /// YNL125C // cdna:known chromosome:SGD1:XIV:390146:392167:-1 gene:YNL125C // ensembl // 11 // --- --- No cerevisiae_gene -1.21228487389587 -1.13573406860187 1.0497650297403 1.17597789463999 1.1738750271914 Max fold change below threshold 4 1.21228487389587 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773691_at YLR394W.S1 Protein required for synaptonemal complex formation, may have a role in meiotic recombination; localizes to synapsis initiation sites on meiotic chromosomes; potential Cdc28p substrate 1.21197218983223 282.903381347656 294.292510986328 CST9 67 // DNA replication and chromosome cycle // traceable author statement /// 7129 // synapsis // inferred from genetic interaction /// 7129 // synapsis // inferred from mutant phenotype /// 7130 // synaptonemal complex formation // inferred from mutant phenotype /// 7130 // synaptonemal complex formation // inferred from physical interaction 228 // nuclear chromosome // inferred from direct assay 3677 // DNA binding // inferred from sequence similarity 266.090606689453 280.757141113281 285.049621582031 322.494415283203 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR394W /GEN=CST9 /DB_XREF=GI:6323426 /SEG=NC_001144:+907950,909398 /DEF=Protein required for synaptonemal complex formation, may have a role in meiotic recombination; localizes to synapsis initiation sites on meiotic chromosomes; potential Cdc28p substrate /NOTE=Cst9p; go_component: nuclear chromosome [goid GO:0000228] [evidence IDA] [pmid 10943844]; go_function: DNA binding [goid GO:0003677] [evidence ISS] [pmid 10454593]; go_process: DNA replication and chromosome cycle [goid GO:0000067] [evidence TAS] [pmid 10454593]; go_process: synaptonemal complex formation [goid GO:0007130] [evidence IMP,IPI] [pmid 10943844] --- --- --- --- --- --- S0004386 // CST9 SGDID:S0004386, Chr XII from 907950-909398, Verified ORF // sgd // 9 // --- /// YLR394W // cdna:known chromosome:SGD1:XII:907950:909398:1 gene:YLR394W // ensembl // 9 // --- --- No cerevisiae_gene -1.07067025862942 1.05511857260315 -1.15068706292518 1.07125022235266 1.21197218983223 Max fold change below threshold 4 1.21197218983223 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778871_at YJL149W.S1 Hypothetical protein; has similarity to F-box proteins 1.21143187059541 922.270599365234 1106.64038085938 --- --- 19005 // SCF ubiquitin ligase complex // inferred from physical interaction --- 1033.75561523438 991.20751953125 853.333679199219 1179.52514648438 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL149W /GEN=SNA3 /DB_XREF=GI:6322312 /SEG=NC_001142:+137297,139288 /DEF=Hypothetical ORF; has similarity to F-box proteins /NOTE=Yjl149wp; go_component: SCF ubiquitin ligase complex [goid GO:0019005] [evidence IPI] [pmid 11283612]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003685 // YJL149W SGDID:S0003685, Chr X from 137297-139288, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024025 // cdna:Genscan chromosome:SGD1:X:137297:139288:1 // ensembl // 11 // --- /// GENEFINDER00000024465 // cdna:GeneFinder chromosome:SGD1:X:137915:139288:1 // ensembl // 11 // --- /// YJL149W // cdna:known chromosome:SGD1:X:137297:139288:1 gene:YJL149W // ensembl // 11 // --- --- No cerevisiae_gene 1.03721615780597 -1.04292551747715 -1.16460820374812 -1.21143187059541 1.14100966331095 Max fold change below threshold 4 1.21143187059541 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774806_at YBR263W.S1 Serine hydroxymethyltransferase, mitochondrial 1.21024958775816 2870.44421386719 3021.97790527344 SHM1 6730 // one-carbon compound metabolism // traceable author statement 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay 4372 // glycine hydroxymethyltransferase activity // traceable author statement 3167.28344726563 2617.0498046875 3123.83862304688 2876.67236328125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR263W /GEN=SHM1 /DB_XREF=GI:37362622 /SEG=NC_001134:+736221,737693 /DEF=Serine hydroxymethyltransferase, mitochondrial /NOTE=Shm1p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 8852837]; go_function: glycine hydroxymethyltransferase activity [goid GO:0004372] [evidence TAS] [pmid 8852837]; go_process: one-carbon compound metabolism [goid GO:0006730] [evidence TAS] [pmid 8852837] --- --- --- --- --- --- S0000467 // SHM1 SGDID:S0000467, Chr II from 736259-737731, Verified ORF // sgd // 11 // --- /// GENEFINDER00000022128 // cdna:GeneFinder chromosome:SGD1:II:736034:737731:1 // ensembl // 11 // --- /// GENSCAN00000021350 // cdna:Genscan chromosome:SGD1:II:736259:737731:1 // ensembl // 11 // --- /// YBR263W // cdna:known chromosome:SGD1:II:736259:737731:1 gene:YBR263W // ensembl // 11 // --- --- No cerevisiae_gene 1.08309966559505 -1.21024958775816 -1.12866463638234 -1.01390751234658 -1.10102335173579 Max fold change below threshold 4 1.21024958775816 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777337_at YNL137C.S1 Mitochondrial ribosomal component of the small subunit 1.21019400437782 1033.88024902344 1019.06533813477 NAM9 6412 // protein biosynthesis // traceable author statement /// 6412 // protein biosynthesis // inferred from direct assay 5763 // mitochondrial small ribosomal subunit // traceable author statement /// 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // traceable author statement /// 3735 // structural constituent of ribosome // inferred from direct assay 959.397521972656 958.849243164063 1108.91125488281 1078.73315429688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL137C /GEN=NAM9 /DB_XREF=GI:6324192 /SEG=NC_001146:-368595,370055 /DEF=Mitochondrial ribosomal protein of the small subunit; can mutate to suppress nonsense mutations in mitochondrial genes /NOTE=Nam9p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 11278769]; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 11278769]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 11278769]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0005081 // NAM9 SGDID:S0005081, Chr XIV from 370055-368595, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019925 // cdna:Genscan chromosome:SGD1:XIV:368595:370055:-1 // ensembl // 11 // --- /// GENEFINDER00000020557 // cdna:GeneFinder chromosome:SGD1:XIV:368595:370055:-1 // ensembl // 11 // --- /// YNL137C // cdna:known chromosome:SGD1:XIV:368595:370055:-1 gene:YNL137C // ensembl // 11 // --- --- No cerevisiae_gene 1.21019400437782 -1.00057180918951 1.1083082905538 1.15584127484792 1.12438601267059 Max fold change below threshold 4 1.21019400437782 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776452_at YIL022W.S1 Peripheral mitochondrial membrane protein involved in mitochondrial protein import, tethers essential chaperone Ssc1p to the translocon channel at the matrix side of the inner membrane 1.2101525267299 885.862640380859 931.117065429688 TIM44 30150 // mitochondrial matrix protein import // traceable author statement 1405 // presequence translocase-associated import motor // inferred from physical interaction /// 5759 // mitochondrial matrix // traceable author statement 8565 // protein transporter activity // traceable author statement 842.581726074219 808.290893554688 963.434387207031 1019.65240478516 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL022W /GEN=TIM44 /DB_XREF=GI:6322167 /SEG=NC_001141:+311163,312458 /DEF=48.8 kDa protein involved in mitochondrial protein import /NOTE=Tim44p; go_component: mitochondrial matrix [goid GO:0005759] [evidence TAS] [pmid 10744987]; go_component: presequence translocase-associated import motor [goid GO:0001405] [evidence IPI] [pmid 14638855]; go_function: protein transporter activity [goid GO:0008565] [evidence TAS] [pmid 10744987]; go_process: mitochondrial matrix protein import [goid GO:0030150] [evidence TAS] [pmid 10913171] --- --- --- --- --- --- S0001284 // TIM44 SGDID:S0001284, Chr IX from 311163-312458, Verified ORF // sgd // 11 // --- /// GENSCAN00000016458 // cdna:Genscan chromosome:SGD1:IX:311163:312458:1 // ensembl // 11 // --- /// GENEFINDER00000019032 // cdna:GeneFinder chromosome:SGD1:IX:311163:312458:1 // ensembl // 11 // --- /// YIL022W // cdna:known chromosome:SGD1:IX:311163:312458:1 gene:YIL022W // ensembl // 11 // --- --- No cerevisiae_gene 1.1849040978977 -1.04242387585084 1.03028129443408 1.14343138166062 1.2101525267299 Max fold change below threshold 4 1.2101525267299 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775781_at YOL119C.S1 Protein with similarity to mammalian monocarboxylate permeases, which are involved in transport of monocarboxylic acids across the plasma membrane; mutant is not deficient in monocarboxylate transport 1.20979604122654 816.332153320313 923.194366455078 MCH4 6810 // transport // inferred from sequence similarity 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay 5215 // transporter activity // inferred from sequence similarity /// 8028 // monocarboxylic acid transporter activity // inferred from genetic interaction /// 8028 // monocarboxylic acid transporter activity // inferred from mutant phenotype 927.278686523438 766.475219726563 866.189086914063 919.110046386719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL119C /GEN=MCH4 /DB_XREF=GI:6324453 /SEG=NC_001147:-94855,96360 /DEF=monocarboxylate permease homologue /NOTE=Mch4p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 11536335]; go_function: monocarboxylic acid transporter activity [goid GO:0008028] [evidence IGI,IMP] [pmid 11536335]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 11536335]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 11536335] --- --- --- --- --- S0005479 // span:98-120,135-157,164-183,188-210,223-245,255-274,311-333,343-365,372-394,404-426,439-461,471-493 // numtm:12 S0005479 // MCH4 SGDID:S0005479, Chr XV from 96360-94855, reverse complement, Verified ORF // sgd // 11 // --- /// YOL119C // cdna:known chromosome:SGD1:XV:94855:96360:-1 gene:YOL119C // ensembl // 11 // --- --- No cerevisiae_gene 1.07428708074637 -1.20979604122654 1.05431180868182 -1.07052686362861 -1.00888755396466 Max fold change below threshold 4 1.20979604122654 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779759_at YGR215W.S1 Mitochondrial ribosomal protein of the small subunit 1.2096908852563 343.717346191406 332.795227050781 RSM27 6412 // protein biosynthesis // inferred from direct assay 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // inferred from direct assay 312.601196289063 309.490142822266 377.944549560547 352.9892578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR215W /GEN=RSM27 /DB_XREF=GI:6321654 /SEG=NC_001139:+922178,922510 /DEF=Mitochondrial ribosomal protein of the small subunit /NOTE=Rsm27p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 11278769]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 11278769]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 11278769] --- --- --- --- --- --- S0003447 // RSM27 SGDID:S0003447, Chr VII from 922180-922512, Verified ORF // sgd // 11 // --- /// GENSCAN00000019508 // cdna:Genscan chromosome:SGD1:VII:922180:922512:1 // ensembl // 11 // --- /// YGR215W // cdna:known chromosome:SGD1:VII:922180:922512:1 gene:YGR215W // ensembl // 11 // --- --- No cerevisiae_gene 1.2096908852563 -1.01005218918582 1.11144477042395 1.20903104033889 1.12919995829476 Max fold change below threshold 4 1.2096908852563 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779033_at YFL001W.S1 Non-essential tRNA:pseudouridine synthase, introduces pseudouridines at position 38 or 39 in tRNA, important for maintenance of translation efficiency and normal cell growth, localizes to both the nucleus and cytoplasm 1.20961567431492 204.839164733887 225.795379638672 DEG1 6396 // RNA processing // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4730 // pseudouridylate synthase activity // inferred from direct assay /// 4730 // pseudouridylate synthase activity // inferred from mutant phenotype 222.130172729492 202.815505981445 206.862823486328 229.460586547852 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL001W /GEN=DEG1 /DB_XREF=GI:14318522 /SEG=NC_001138:+147126,148454 /DEF=Non-essential tRNA:pseudouridine synthase, introduces pseudouridines at position 38 or 39 in tRNA, important for maintenance of translation efficiency and normal cell growth, localizes to both the nucleus and cytoplasm /NOTE=Deg1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 9430663]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9430663]; go_function: pseudouridylate synthase activity [goid GO:0004730] [evidence IDA,IMP] [pmid 9430663]; go_process: RNA processing [goid GO:0006396] [evidence IDA] [pmid 9430663] --- --- --- --- --- --- S0001895 // DEG1 SGDID:S0001895, Chr VI from 147126-148454, Verified ORF // sgd // 11 // --- /// GENSCAN00000023243 // cdna:Genscan chromosome:SGD1:VI:147159:148454:1 // ensembl // 11 // --- /// GENEFINDER00000018543 // cdna:GeneFinder chromosome:SGD1:VI:147831:148454:1 // ensembl // 11 // --- /// YFL001W // cdna:known chromosome:SGD1:VI:147126:148454:1 gene:YFL001W // ensembl // 11 // --- --- No cerevisiae_gene 1.20961567431492 -1.09523269266115 1.12195179083694 -1.07380421955892 1.03300053175255 Max fold change below threshold 4 1.20961567431492 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778775_at YBR058C.S1 Ubiquitin-specific protease that specifically disassembles unanchored ubiquitin chains; involved in fructose-1,6-bisphosphatase (Fbp1p) degradation; similar to human isopeptidase T 1.209374665016 891.544616699219 906.740509033203 UBP14 16579 // protein deubiquitination // traceable author statement /// 45721 // negative regulation of gluconeogenesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from curator 4843 // ubiquitin-specific protease activity // traceable author statement 835.271545410156 830.129943847656 952.959289550781 978.20947265625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR058C /GEN=UBP14 /DB_XREF=GI:37362616 /SEG=NC_001134:-353632,355977 /DEF=Ubiquitin-specific protease that specifically disassembles unanchored ubiquitin chains; involved in fructose-1,6-bisphosphatase (FBPase) degradation /NOTE=Ubp14p; go_component: cytoplasm [goid GO:0005737] [evidence IC] [pmid 8982460]; go_function: ubiquitin-specific protease activity [goid GO:0004843] [evidence TAS] [pmid 8982460]; go_process: negative regulation of gluconeogenesis [goid GO:0045721] [evidence IMP] [pmid 12686616]; go_process: protein deubiquitination [goid GO:0016579] [evidence TAS] [pmid 8982460] --- --- --- --- --- --- S0000262 // UBP14 SGDID:S0000262, Chr II from 356015-353670, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021186 // cdna:Genscan chromosome:SGD1:II:353670:356069:-1 // ensembl // 11 // --- /// GENEFINDER00000022161 // cdna:GeneFinder chromosome:SGD1:II:353670:356015:-1 // ensembl // 11 // --- /// YBR058C // cdna:known chromosome:SGD1:II:353670:356015:-1 gene:YBR058C // ensembl // 11 // --- --- No cerevisiae_gene -1.209374665016 -1.00619373099429 1.1602330098109 1.14089758568614 1.17112749504223 Max fold change below threshold 4 1.209374665016 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779132_at YMR092C.S1 Actin cortical patch component, interacts with the actin depolymerizing factor cofilin; required to restrict cofilin localization to cortical patches; contains WD repeats 1.20933710140707 2076.77563476563 2210.630859375 AIP1 6970 // response to osmotic stress // inferred from mutant phenotype /// 30042 // actin filament depolymerization // inferred from physical interaction /// 30042 // actin filament depolymerization // inferred from genetic interaction 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay /// 30479 // actin cortical patch // inferred from direct assay 5515 // protein binding // inferred from direct assay 2230.51245117188 2056.81494140625 2096.736328125 2190.74926757813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR092C /GEN=AIP1 /DB_XREF=GI:6323739 /SEG=NC_001145:-451631,453478 /DEF=Protein localizes to actin cortical patches. Probable binding site on actin lies on front surface of subdomain 3 and 4. /NOTE=Aip1p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10652251]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 10366597]; go_process: actin filament depolymerization [goid GO:0030042] [evidence IGI,IPI] [pmid 10366597]; go_process: response to osmotic stress [goid GO:0006970] [evidence IMP] [pmid 10652251] --- --- --- --- --- --- S0004698 // AIP1 SGDID:S0004698, Chr XIII from 453478-451631, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018788 // cdna:Genscan chromosome:SGD1:XIII:451631:453478:-1 // ensembl // 11 // --- /// GENEFINDER00000021855 // cdna:GeneFinder chromosome:SGD1:XIII:451631:453478:-1 // ensembl // 11 // --- /// YMR092C // cdna:known chromosome:SGD1:XIII:451631:453478:-1 gene:YMR092C // ensembl // 11 // --- --- No cerevisiae_gene -1.20933710140707 -1.08444975105386 1.06739786950321 -1.06380207241723 -1.01815049498463 Max fold change below threshold 4 1.20933710140707 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770037_at YGL228W.S1 Putative glycosylphosphatidylinositol (GPI)-anchored protein of unknown function; overexpression causes growth arrest 1.20886976722624 1471.2314453125 1699.54638671875 SHE10 --- --- --- 1718.89416503906 1520.56103515625 1421.90185546875 1680.19860839844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL228W /GEN=SHE10 /DB_XREF=GI:6321209 /SEG=NC_001139:+67597,69330 /DEF=Putative glycosylphosphatidylinositol (GPI)-anchored protein of unknown function; overexpression causes growth arrest /NOTE=She10p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003197 // SHE10 SGDID:S0003197, Chr VII from 67598-69331, Verified ORF // sgd // 11 // --- /// GENSCAN00000019178 // cdna:Genscan chromosome:SGD1:VII:67598:69331:1 // ensembl // 11 // --- /// GENEFINDER00000021489 // cdna:GeneFinder chromosome:SGD1:VII:67598:69331:1 // ensembl // 11 // --- /// YGL228W // cdna:known chromosome:SGD1:VII:67598:69331:1 gene:YGL228W // ensembl // 11 // --- --- No cerevisiae_gene -1.08042772141942 -1.1304341787651 -1.05244991360245 -1.20886976722624 -1.02303034679782 Max fold change below threshold 4 1.20886976722624 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771930_at YLR204W.S1 Mitochondrial protein of unknown function 1.20669070741072 875.701568603516 1004.19989013672 QRI5 --- 5739 // mitochondrion // inferred from direct assay --- 1010.93798828125 837.777221679688 913.625915527344 997.461791992188 0.00122069998178631 0.00122069998178631 0.00122069998178631 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR204W /GEN=QRI5 /DB_XREF=GI:6323233 /SEG=NC_001144:+552272,552607 /DEF=Product of gene unknown /NOTE=Qri5p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004194 // QRI5 SGDID:S0004194, Chr XII from 552272-552607, Verified ORF // sgd // 11 // --- /// YLR204W // cdna:known chromosome:SGD1:XII:552272:552607:1 gene:YLR204W // ensembl // 11 // --- GENEFINDER00000024849 // ensembl // 6 // Cross Hyb Matching Probes No cerevisiae_gene -1.06202976133837 -1.20669070741072 -1.02526199469666 -1.10651194444034 -1.01351048871972 Max fold change below threshold 4 1.20669070741072 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779379_at YER072W.S1 Vacuolar transporter chaperon (VTC) involved in distributing V-ATPase and other membrane proteins; together with other VTC proteins, forms a heterotetrameric complex that associates with the SNARE Nyv1p and the V0 sector of the V-ATPase 1.20529843382087 1985.50134277344 1902.31402587891 VTC1 42144 // vacuole fusion, non-autophagic // inferred from mutant phenotype 31310 // intrinsic to vacuolar membrane // inferred from direct assay --- 1949.06689453125 1936.17321777344 2034.82946777344 1855.56115722656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER072W /GEN=VTC1 /DB_XREF=GI:6320916 /SEG=NC_001137:+302804,303193 /DEF=Null mutant identified in different genetic screens both by its ability to reverse the Cdc42p suppression of a cdc24-4ts mutant and its ability to suppress the vacuolar ATPase null phenotype /NOTE=Vtc1p; go_component: vacuolar membrane [goid GO:0005774] [evidence IDA] [pmid 11823419]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: vacuole fusion, non-autophagic [goid GO:0042144] [evidence IMP] [pmid 11823419] --- --- --- --- --- S0000874 // span:32-54,61-83,98-120 // numtm:3 S0000874 // VTC1 SGDID:S0000874, Chr V from 302804-303193, Verified ORF // sgd // 11 // --- /// YER072W // cdna:known chromosome:SGD1:V:302804:303193:1 gene:YER072W // ensembl // 11 // --- --- No cerevisiae_gene 1.20529843382087 -1.0066593611767 -1.03326387854372 1.04400186236954 -1.05039216139038 Max fold change below threshold 4 1.20529843382087 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773153_at YDR034C.S1 Transcriptional activator involved in regulation of genes of the lysine biosynthesis pathway; requires 2-aminoadipate semialdehyde as co-inducer 1.20523515481414 839.603759765625 776.723846435547 LYS14 19878 // lysine biosynthesis, aminoadipic pathway // traceable author statement 5634 // nucleus // inferred from direct assay 16563 // transcriptional activator activity // inferred from mutant phenotype /// 16563 // transcriptional activator activity // traceable author statement 745.877685546875 847.283020019531 831.924499511719 807.570007324219 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR034C /GEN=LYS14 /DB_XREF=GI:6320237 /SEG=NC_001136:-509732,512104 /DEF=Transcriptional activator of lysine pathway genes with 2-aminoadipate semialdehyde as co-inducer; saccharopine reductase synthesis /NOTE=Lys14p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10975256]; go_function: transcriptional activator activity [goid GO:0016563] [evidence IMP,TAS] [pmid 7935367]; go_process: lysine biosynthesis, aminoadipic pathway [goid GO:0019878] [evidence TAS] [pmid 3928261] --- --- --- --- --- --- S0002441 // LYS14 SGDID:S0002441, Chr IV from 512105-509733, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023436 // cdna:GeneFinder chromosome:SGD1:IV:509733:511877:-1 // ensembl // 11 // --- /// GENSCAN00000025120 // cdna:Genscan chromosome:SGD1:IV:509733:511877:-1 // ensembl // 11 // --- /// YDR034C // cdna:known chromosome:SGD1:IV:509733:512105:-1 gene:YDR034C // ensembl // 11 // --- --- No cerevisiae_gene -1.09455693385121 1.13595437487623 1.20523515481414 1.11536316963519 1.08271104361047 Max fold change below threshold 4 1.20523515481414 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773112_at YPL032C.S1 Protein of unknown function, mutant phenotype suggests a potential role in vacuolar function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck /// Similar to probable membrane protein YLR334C and ORF YOL106W 1.20419592615092 566.352935791016 577.136444091797 SVL3 6897 // endocytosis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5933 // bud // inferred from direct assay /// 5935 // bud neck // inferred from direct assay --- 555.46484375 515.441833496094 617.264038085938 598.808044433594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL032C /GEN=SVL3 /DB_XREF=GI:6325225 /SEG=NC_001148:-488883,491360 /DEF=Protein of unknown function, mutant phenotype suggests a potential role in vacuolar function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck /NOTE=Svl3p; go_component: bud [goid GO:0005933] [evidence IDA] [pmid 14562095]; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 14562095]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 9751732] --- --- --- --- --- S0007233 // span:5-27 // numtm:1 S0005953 // SVL3 SGDID:S0005953, Chr XVI from 491362-488885, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017162 // cdna:Genscan chromosome:SGD1:XVI:488885:490189:-1 // ensembl // 11 // --- /// GENEFINDER00000020960 // cdna:GeneFinder chromosome:SGD1:XVI:488885:490576:-1 // ensembl // 11 // --- /// YPL032C // cdna:known chromosome:SGD1:XVI:488885:491362:-1 gene:YPL032C // ensembl // 11 // --- --- No cerevisiae_gene 1.13458032405291 -1.07764796656577 -1.20419592615092 1.11125671594034 1.0780305021484 Max fold change below threshold 4 1.20419592615092 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778772_at YGR235C.S1 Hypothetical protein 1.20278143952714 2134.92388916016 2006.45526123047 --- --- 5739 // mitochondrion // inferred from direct assay --- 1978.99084472656 1889.55432128906 2380.29345703125 2033.91967773438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR235C /GEN=YHB1 /DB_XREF=GI:6321674 /SEG=NC_001139:-961362,962063 /DEF=Hypothetical ORF /NOTE=Ygr235cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0003467 // span:142-164 // numtm:1 S0003467 // YGR235C SGDID:S0003467, Chr VII from 962064-961363, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019521 // cdna:Genscan chromosome:SGD1:VII:961363:962064:-1 // ensembl // 11 // --- /// GENEFINDER00000021671 // cdna:GeneFinder chromosome:SGD1:VII:961363:962064:-1 // ensembl // 11 // --- /// YGR235C // cdna:known chromosome:SGD1:VII:961363:962064:-1 gene:YGR235C // ensembl // 11 // --- --- No cerevisiae_gene -1.04935693129036 -1.04733207319305 1.07199695926935 1.20278143952714 1.02775598136504 Max fold change below threshold 4 1.20278143952714 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773362_at YBR282W.S1 Mitochondrial ribosomal protein of the large subunit 1.20206382347902 670.106079101563 819.699066162109 MRPL27 6412 // protein biosynthesis // traceable author statement 5762 // mitochondrial large ribosomal subunit // traceable author statement /// 5762 // mitochondrial large ribosomal subunit // inferred from physical interaction 3735 // structural constituent of ribosome // traceable author statement 780.216674804688 665.646667480469 674.565490722656 859.181457519531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR282W /GEN=MRPL27 /DB_XREF=GI:6319759 /SEG=NC_001134:+768198,768638 /DEF=Mitochondrial ribosomal protein of the large subunit /NOTE=Mrpl27p; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence IPI] [pmid 12392552]; go_component: mitochondrial large ribosomal subunit [goid GO:0005762] [evidence TAS] [pmid 9445368]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence TAS] [pmid 9445368]; go_process: protein biosynthesis [goid GO:0006412] [evidence TAS] [pmid 9445368] --- --- --- --- --- --- S0000486 // MRPL27 SGDID:S0000486, Chr II from 768236-768676, Verified ORF // sgd // 11 // --- /// GENSCAN00000021364 // cdna:Genscan chromosome:SGD1:II:768236:768676:1 // ensembl // 11 // --- /// YBR282W // cdna:known chromosome:SGD1:II:768236:768676:1 gene:YBR282W // ensembl // 11 // --- --- No cerevisiae_gene 1.20206382347902 -1.17211835185456 1.16820356925214 -1.15662109244404 1.10120878630877 Max fold change below threshold 4 1.20206382347902 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771734_at YKL011C.S1 cruciform cutting endonuclease 1.20197598168059 139.538833618164 175.211952209473 CCE1 6310 // DNA recombination // traceable author statement 5743 // mitochondrial inner membrane // inferred from direct assay 4520 // endodeoxyribonuclease activity // inferred from direct assay 164.943435668945 141.280410766602 137.797256469727 185.48046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL011C /GEN=CCE1 /DB_XREF=GI:6322841 /SEG=NC_001143:-419798,420859 /DEF=cruciform cutting endonuclease /NOTE=Cce1p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence IDA] [pmid 8413191]; go_function: endodeoxyribonuclease activity [goid GO:0004520] [evidence IDA] [pmid 8413191]; go_process: DNA recombination [goid GO:0006310] [evidence TAS] [pmid 12024022] --- --- --- --- --- --- S0001494 // CCE1 SGDID:S0001494, Chr XI from 420859-419798, reverse complement, Verified ORF // sgd // 11 // --- /// YKL011C // cdna:known chromosome:SGD1:XI:419798:420859:-1 gene:YKL011C // ensembl // 11 // --- --- No cerevisiae_gene -1.20197598168059 -1.16748977989196 1.15144953163968 -1.19700086848378 1.12450955079094 Max fold change below threshold 4 1.20197598168059 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778800_at YFL010W-A.S1 Protein required for the negative regulation by ammonia of Gap1p, which is a general amino acid permease 1.2014473020392 115.474918365479 125.37638092041 AUA1 6865 // amino acid transport // inferred from mutant phenotype --- --- 113.903594970703 109.703384399414 121.246452331543 136.849166870117 0.000244141003349796 0.000244141003349796 0.00122069998178631 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFL010W-A /GEN=AUA1 /DB_XREF=GI:14318511 /SEG=NC_001138:+114984,115268 /DEF=Protein required for the negative regulation by ammonia of Gap1p, which is a general amino acid permease /NOTE=Aua1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: amino acid transport [goid GO:0006865] [evidence IMP] [pmid 8497191] --- --- --- --- scop // a.4.1.AraC type transcriptional activator // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; AraC type transcriptional activator // 1.39999997615814 --- S0001955 // AUA1 SGDID:S0001955, Chr VI from 114984-115268, Verified ORF // sgd // 11 // --- /// YFL010W-A // cdna:known chromosome:SGD1:VI:114984:115268:1 gene:YFL010W-A // ensembl // 11 // --- S0001884 // sgd // 8 // Negative Strand Matching Probes /// GENEFINDER00000018515 // ensembl // 8 // Negative Strand Matching Probes /// GENSCAN00000023233 // ensembl // 8 // Negative Strand Matching Probes /// YFL010C // ensembl // 8 // Negative Strand Matching Probes No cerevisiae_gene -1.18987298996955 -1.03828697349935 1.17551769066119 1.06446554529494 1.2014473020392 Max fold change below threshold 4 1.2014473020392 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775663_at YJR137C.S1 Sulfite reductase beta subunit, involved in amino acid biosynthesis, transcription repressed by methionine 1.19867705457742 1873.63354492188 1643.57843017578 ECM17 103 // sulfate assimilation // non-traceable author statement /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype /// 8652 // amino acid biosynthesis // traceable author statement 5737 // cytoplasm // inferred from direct assay /// 5737 // cytoplasm // traceable author statement /// 9337 // sulfite reductase complex (NADPH) // inferred from direct assay /// 9337 // sulfite reductase complex (NADPH) // inferred from sequence similarity 4783 // sulfite reductase (NADPH) activity // non-traceable author statement 1588.40051269531 1843.28784179688 1903.97924804688 1698.75634765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR137C /GEN=ECM17 /DB_XREF=GI:14318438 /SEG=NC_001142:-678872,683200 /DEF=Sulfite reductase beta subunit, involved in amino acid biosynthesis, transcription repressed by methionine /NOTE=Ecm17p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: sulfite reductase complex (NADPH) [goid GO:0009337] [evidence IDA,ISS] [pmid 9003798]; go_function: sulfite reductase (NADPH) activity [goid GO:0004783] [evidence NAS] [pmid 1479340]; go_process: amino acid biosynthesis [goid GO:0008652] [evidence TAS] [pmid 1789001]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584]; go_process: sulfate assimilation [goid GO:0000103] [evidence NAS] [pmid 1479340] --- --- --- --- --- --- S0003898 // ECM17 SGDID:S0003898, Chr X from 683200-678872, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024241 // cdna:Genscan chromosome:SGD1:X:678872:683200:-1 // ensembl // 11 // --- /// GENEFINDER00000024316 // cdna:GeneFinder chromosome:SGD1:X:678872:683200:-1 // ensembl // 11 // --- /// YJR137C // cdna:known chromosome:SGD1:X:678872:683200:-1 gene:YJR137C // ensembl // 11 // --- --- No cerevisiae_gene 1.14264054354625 1.16046792170134 1.15254603437995 1.19867705457742 1.06947607614006 Max fold change below threshold 4 1.19867705457742 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777661_at YLR305C.S1 Phosphatidylinositol-4-kinase that functions in the Pkc1p protein kinase pathway; required for normal vacuole morphology, cell wall integrity, and actin cytoskeleton organization 1.19849396324467 513.375305175781 591.564147949219 STT4 165 // MAPKKK cascade // inferred from direct assay /// 165 // MAPKKK cascade // inferred from mutant phenotype /// 6646 // phosphatidylethanolamine biosynthesis // inferred from mutant phenotype /// 9306 // protein secretion // inferred from mutant phenotype /// 30036 // actin cytoskeleton organization and biogenesis // inferred from mutant phenotype /// 46854 // phosphoinositide phosphorylation // inferred from mutant phenotype /// 48017 // inositol lipid-mediated signaling // traceable author statement 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from direct assay 4430 // 1-phosphatidylinositol 4-kinase activity // inferred from mutant phenotype 582.20556640625 485.815307617188 540.935302734375 600.922729492188 0.00292969006113708 0.00195312988944352 0.00195312988944352 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR305C /GEN=STT4 /DB_XREF=GI:6323336 /SEG=NC_001144:-738163,743865 /DEF=functions in the PKC1 protein kinase pathway, in a pathway with STT1 and MSS4 /NOTE=Stt4p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12015967]; go_function: 1-phosphatidylinositol 4-kinase activity [goid GO:0004430] [evidence IMP] [pmid 8288577]; go_process: MAPKKK cascade [goid GO:0000165] [evidence IDA,IMP] [pmid 12015967]; go_process: actin cytoskeleton organization and biogenesis [goid GO:0030036] [evidence IMP] [pmid 10930462]; go_process: phosphatidylethanolamine biosynthesis [goid GO:0006646] [evidence IMP] [pmid 9582361]; go_process: protein secretion [goid GO:0009306] [evidence IMP] [pmid 10930462] --- --- --- --- --- --- S0004296 // STT4 SGDID:S0004296, Chr XII from 743865-738163, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018056 // cdna:Genscan chromosome:SGD1:XII:738163:743865:-1 // ensembl // 11 // --- /// GENEFINDER00000024572 // cdna:GeneFinder chromosome:SGD1:XII:738163:742944:-1 // ensembl // 11 // --- /// YLR305C // cdna:known chromosome:SGD1:XII:738163:743865:-1 gene:YLR305C // ensembl // 11 // --- --- No cerevisiae_gene -1.19849396324467 -1.19840926639762 -1.11933625960263 -1.07629426932067 1.03214871888201 Max fold change below threshold 4 1.19849396324467 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779223_at YML007W.S1 Basic leucine zipper (bZIP) transcription factor required for oxidative stress tolerance; mediates pleiotropic drug and metal resistance; localized to the nucleus in response to the presence of oxidants 1.19838226448651 1488.73272705078 1669.19146728516 YAP1 6350 // transcription // traceable author statement /// 6350 // transcription // inferred from direct assay /// 6979 // response to oxidative stress // traceable author statement /// 42493 // response to drug // traceable author statement /// 46685 // response to arsenic // inferred from mutant phenotype /// 46685 // response to arsenic // inferred from expression pattern 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 3700 // transcription factor activity // traceable author statement /// 3700 // transcription factor activity // inferred from direct assay 1662.31872558594 1465.53930664063 1511.92614746094 1676.06420898438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML007W /GEN=YAP1 /DB_XREF=GI:6323636 /SEG=NC_001145:+253848,255800 /DEF=bZip transcription factor required for oxidative stress tolerance and localized to the nucleus in response to the presence of oxidants. /NOTE=Yap1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 12582119]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12582119]; go_function: transcription factor activity [goid GO:0003700] [evidence TAS] [pmid 11274141]; go_process: response to drug [goid GO:0042493] [evidence TAS] [pmid 9922230]; go_process: response to oxidative stress [goid GO:0006979] [evidence TAS] [pmid 9922230]; go_process: transcription [goid GO:0006350] [evidence TAS] [pmid 12464172] --- --- --- --- --- --- S0004466 // YAP1 SGDID:S0004466, Chr XIII from 253848-255800, Verified ORF // sgd // 11 // --- /// GENSCAN00000018712 // cdna:Genscan chromosome:SGD1:XIII:253848:255800:1 // ensembl // 11 // --- /// GENEFINDER00000021861 // cdna:GeneFinder chromosome:SGD1:XIII:253848:255800:1 // ensembl // 11 // --- /// YML007W // cdna:known chromosome:SGD1:XIII:253848:255800:1 gene:YML007W // ensembl // 11 // --- --- No cerevisiae_gene -1.19838226448651 -1.13427099365651 -1.05898254982952 -1.09947084940462 1.00826886155276 Max fold change below threshold 4 1.19838226448651 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775952_at YPR159W.S1 Protein required for beta-1,6 glucan biosynthesis; putative beta-glucan synthase; appears functionally redundant with Skn1p 1.19812888451737 2471.22314453125 2603.44555664063 KRE6 6078 // beta-1,6 glucan biosynthesis // inferred from sequence similarity /// 6078 // beta-1,6 glucan biosynthesis // inferred from mutant phenotype /// 7047 // cell wall organization and biogenesis // inferred from mutant phenotype 137 // Golgi cis cisterna // inferred from direct assay /// 16021 // integral to membrane // inferred from direct assay 15926 // glucosidase activity // inferred from mutant phenotype /// 15926 // glucosidase activity // inferred from sequence similarity 2694.0703125 2248.56469726563 2693.88159179688 2512.82080078125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR159W /GEN=KRE6 /DB_XREF=GI:6325417 /SEG=NC_001148:+857577,859739 /DEF=cell wall beta-glucan assembly /NOTE=Kre6p; go_component: Golgi cis cisterna [goid GO:0000137] [evidence IDA] [pmid 12237851]; go_component: integral to membrane [goid GO:0016021] [evidence IDA] [pmid 7929594]; go_function: glucosidase activity [goid GO:0015926] [evidence IMP,ISS] [pmid 10601196]; go_process: beta-1,6 glucan biosynthesis [goid GO:0006078] [evidence IMP,ISS] [pmid 7929594]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 7929594] --- --- --- --- --- S0006363 // span:253-275 // numtm:1 S0006363 // KRE6 SGDID:S0006363, Chr XVI from 857579-859741, Verified ORF // sgd // 11 // --- /// GENSCAN00000017306 // cdna:Genscan chromosome:SGD1:XVI:857579:859741:1 // ensembl // 11 // --- /// GENEFINDER00000020869 // cdna:GeneFinder chromosome:SGD1:XVI:857579:859741:1 // ensembl // 11 // --- /// YPR159W // cdna:known chromosome:SGD1:XVI:857579:859741:1 gene:YPR159W // ensembl // 11 // --- --- No cerevisiae_gene 1.17300065464953 -1.19812888451737 -1.08502643709874 -1.00007005530744 -1.07212989945897 Max fold change below threshold 4 1.19812888451737 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771090_at YKL220C.S1 Ferric reductase and cupric reductase, reduces siderophore-bound iron and oxidized copper prior to uptake by transporters; expression induced by low iron levels but not by low copper levels 1.19778397574896 169.281463623047 181.55086517334 FRE2 6826 // iron ion transport // inferred from direct assay /// 15677 // copper ion import // inferred from direct assay 5886 // plasma membrane // inferred from direct assay 293 // ferric-chelate reductase activity // inferred from direct assay 168.147811889648 163.368148803711 175.194778442383 194.953918457031 0.000732421991415322 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL220C /GEN=FRE2 /DB_XREF=GI:6322629 /SEG=NC_001143:-9092,11227 /DEF=Ferric reductase and cupric reductase, reduces siderophore-bound iron and oxdized copper prior to uptake by transporters; expression induced by low iron levels but not by low copper levels /NOTE=Fre2p; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 8164662]; go_function: ferric-chelate reductase activity [goid GO:0000293] [evidence IDA] [pmid 8164662]; go_process: copper ion import [goid GO:0015677] [evidence IDA] [pmid 9153234]; go_process: iron ion transport [goid GO:0006826] [evidence IDA] [pmid 8164662] --- --- --- --- --- S0001703 // span:162-184,234-256,276-298,318-340,352-374,378-396,401-423 // numtm:7 S0001703 // FRE2 SGDID:S0001703, Chr XI from 11227-9092, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018252 // cdna:Genscan chromosome:SGD1:XI:9092:10903:-1 // ensembl // 11 // --- /// GENEFINDER00000023164 // cdna:GeneFinder chromosome:SGD1:XI:9092:10903:-1 // ensembl // 11 // --- /// YKL220C // cdna:known chromosome:SGD1:XI:9092:11227:-1 gene:YKL220C // ensembl // 11 // --- --- No cerevisiae_gene 1.19778397574896 -1.02925700707841 1.17625396617977 1.04190935625947 1.15941989530601 Max fold change below threshold 4 1.19778397574896 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770721_at YPR062W.S1 Cytosine deaminase, involved in salvage pathways of pyrimidine metabolism 1.19736801720204 3691.59375 3098.81225585938 FCY1 8655 // pyrimidine salvage // inferred from mutant phenotype /// 19858 // cytosine metabolism // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4131 // cytosine deaminase activity // inferred from direct assay 3173.79321289063 3582.98901367188 3800.19848632813 3023.83129882813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR062W /GEN=FCY1 /DB_XREF=GI:6325319 /SEG=NC_001148:+677160,677636 /DEF=Cytosine deaminase, involved in salvage pathways of pyrimidine metabolism /NOTE=Fcy1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: cytosine deaminase activity [goid GO:0004131] [evidence IDA] [pmid 9000374]; go_process: cytosine metabolism [goid GO:0019858] [evidence IMP] [pmid 9000374] --- --- --- --- --- --- S0006266 // FCY1 SGDID:S0006266, Chr XVI from 677162-677638, Verified ORF // sgd // 11 // --- /// GENSCAN00000017232 // cdna:Genscan chromosome:SGD1:XVI:677177:677638:1 // ensembl // 11 // --- /// GENEFINDER00000020719 // cdna:GeneFinder chromosome:SGD1:XVI:677177:677638:1 // ensembl // 11 // --- /// YPR062W // cdna:known chromosome:SGD1:XVI:677162:677638:1 gene:YPR062W // ensembl // 11 // --- --- No cerevisiae_gene 1.1535287657395 1.12892957207145 -1.07059339938967 1.19736801720204 -1.04959334673221 Max fold change below threshold 4 1.19736801720204 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777827_at YHR072W-A.S1 Constituent of small nucleolar ribonucleoprotein particles containing H/ACA-type snoRNAs, which are required for pseudouridylation and processing of pre-18S rRNA 1.19709829228124 2209.39910888672 2100.59228515625 NOP10 154 // rRNA modification // traceable author statement /// 6365 // 35S primary transcript processing // traceable author statement /// 31118 // rRNA pseudouridine synthesis // inferred from mutant phenotype 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction 3723 // RNA binding // inferred from direct assay 2100.99877929688 2515.10205078125 1903.69616699219 2100.18579101563 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR072W-A /GEN=NOP10 /DB_XREF=GI:7839181 /SEG=NC_001140:+241665,241841 /DEF=Constituent of small nucleolar ribonucleoprotein particles containing H/ACA-type snoRNAs, which are required for pseudouridylation and processing of pre-18S rRNA /NOTE=Nop10p; go_component: small nuclear ribonucleoprotein complex [goid GO:0030532] [evidence TAS] [pmid 10690410]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 9843512]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: rRNA modification [goid GO:0000154] [evidence TAS] [pmid 10690410] --- --- --- --- --- --- S0007455 // NOP10 SGDID:S0007455, Chr VIII from 241665-241841, Verified ORF // sgd // 11 // --- /// YHR072W-A // cdna:known chromosome:SGD1:VIII:241665:241841:1 gene:YHR072W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.17987364408041 1.19709829228124 1.11097539988364 -1.10364186035864 -1.00038710302904 Max fold change below threshold 4 1.19709829228124 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775944_at YOR367W.S1 Component of yeast cortical actin cytoskeleton, binds and cross links actin filaments; originally identified by its homology to calponin (contains a calponin-like repeat) but the Scp1p domain structure is more similar to transgelin 1.19673335928758 1321.3115234375 1502.1103515625 SCP1 1300 // chronological cell aging // inferred from genetic interaction /// 1300 // chronological cell aging // inferred from mutant phenotype /// 7015 // actin filament organization // inferred from direct assay 30479 // actin cortical patch // inferred from direct assay 30674 // protein binding, bridging // inferred from direct assay /// 51015 // actin filament binding // inferred from direct assay 1430.41015625 1400.39343261719 1242.22961425781 1573.810546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR367W /GEN=SCP1 /DB_XREF=GI:6324943 /SEG=NC_001147:+1026003,1026605 /DEF=novel component of yeast cortical actin patches, shares functions and biochemical activities with Sac6p fimbrin, binds directly to and cross-links filamentous actin, stabilizes filaments against disassembly /NOTE=Scp1p; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 12857851]; go_function: actin filament binding [goid GO:0051015] [evidence IDA] [pmid 12857851]; go_function: protein binding, bridging [goid GO:0030674] [evidence IDA] [pmid 12857851]; go_process: actin filament organization [goid GO:0007015] [evidence IDA] [pmid 12857851] --- --- --- --- --- --- S0005894 // SCP1 SGDID:S0005894, Chr XV from 1026003-1026605, Verified ORF // sgd // 11 // --- /// GENSCAN00000017815 // cdna:Genscan chromosome:SGD1:XV:1026003:1026605:1 // ensembl // 11 // --- /// GENEFINDER00000022931 // cdna:GeneFinder chromosome:SGD1:XV:1026003:1026605:1 // ensembl // 11 // --- /// YOR367W // cdna:known chromosome:SGD1:XV:1026003:1026605:1 gene:YOR367W // ensembl // 11 // --- --- No cerevisiae_gene -1.19673335928758 -1.02143449328859 1.18202018788317 -1.15148611805123 1.10025123912776 Max fold change below threshold 4 1.19673335928758 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769570_at YDR245W.S1 Subunit of a Golgi mannosyltransferase complex also containing Anp1p, Mnn9p, Mnn11p, and Hoc1p that mediates elongation of the polysaccharide mannan backbone; membrane protein of the mannosyltransferase family 1.1965390080373 1401.71112060547 1269.31384277344 MNN10 32 // cell wall mannoprotein biosynthesis // traceable author statement /// 6080 // mannan metabolism // traceable author statement /// 6491 // N-glycan processing // traceable author statement /// 7015 // actin filament organization // inferred from mutant phenotype 136 // alpha-1,6-mannosyltransferase complex // inferred from direct assay 9 // alpha-1,6-mannosyltransferase activity // inferred from direct assay 1280.2158203125 1384.14233398438 1419.27990722656 1258.41186523438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR245W /GEN=MNN10 /DB_XREF=GI:6320451 /SEG=NC_001136:+952792,953973 /DEF=Required for mannan synthesis and for polarized growth and bud emergence /NOTE=Mnn10p; go_component: mannosyltransferase complex [goid GO:0000136] [evidence IDA] [pmid 10037752]; go_function: alpha-1,6-mannosyltransferase activity [goid GO:0000009] [evidence IDA] [pmid 10037752]; go_process: N-glycan processing [goid GO:0006491] [evidence TAS] [pmid 10037752]; go_process: actin filament organization [goid GO:0007015] [evidence IMP] [pmid 9153752]; go_process: cell wall mannoprotein biosynthesis [goid GO:0000032] [evidence TAS] [pmid 10037752]; go_process: mannan metabolism [goid GO:0006080] [evidence TAS] [pmid 10037752] --- --- --- --- --- S0002653 // span:53-72 // numtm:1 S0002653 // MNN10 SGDID:S0002653, Chr IV from 952794-953975, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023761 // cdna:GeneFinder chromosome:SGD1:IV:952794:953975:1 // ensembl // 11 // --- /// GENSCAN00000025288 // cdna:Genscan chromosome:SGD1:IV:952794:953975:1 // ensembl // 11 // --- /// YDR245W // cdna:known chromosome:SGD1:IV:952794:953975:1 gene:YDR245W // ensembl // 11 // --- --- No cerevisiae_gene 1.12476124020837 1.08117890126253 -1.1965390080373 1.10862550259699 -1.01732656507817 Max fold change below threshold 4 1.1965390080373 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770280_at YPL259C.S1 Mu1-like medium subunit of the clathrin-associated protein complex (AP-1); binds clathrin; involved in clathrin-dependent Golgi protein sorting 1.19583535153688 960.017913818359 935.633209228516 APM1 16192 // vesicle-mediated transport // inferred from sequence similarity /// 16192 // vesicle-mediated transport // traceable author statement /// 16192 // vesicle-mediated transport // inferred from physical interaction 30121 // AP-1 adaptor complex // inferred from sequence similarity /// 30121 // AP-1 adaptor complex // inferred from physical interaction 30276 // clathrin binding // inferred from sequence similarity /// 30276 // clathrin binding // inferred from physical interaction 885.469909667969 923.315307617188 996.720520019531 985.796508789063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL259C /GEN=APM1 /DB_XREF=GI:6324996 /SEG=NC_001148:-51244,52671 /DEF=medium subunit of the clathrin-associated protein complex /NOTE=Apm1p; go_component: AP-1 adaptor complex [goid GO:0030121] [evidence IPI,ISS] [pmid 10564262]; go_function: clathrin binding [goid GO:0030276] [evidence IPI,ISS] [pmid 10564262]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IPI,ISS] [pmid 10564262] --- --- --- --- --- --- S0006180 // APM1 SGDID:S0006180, Chr XVI from 52671-51244, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000016985 // cdna:Genscan chromosome:SGD1:XVI:51244:52671:-1 // ensembl // 10 // --- /// GENEFINDER00000020984 // cdna:GeneFinder chromosome:SGD1:XVI:51244:52671:-1 // ensembl // 10 // --- /// YPL259C // cdna:known chromosome:SGD1:XVI:51244:52671:-1 gene:YPL259C // ensembl // 10 // --- --- No cerevisiae_gene 1.19583535153688 1.04274046755966 1.10834497842811 1.12564019300586 1.11330322806646 Max fold change below threshold 4 1.19583535153688 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778180_at YLR378C.S1 Essential subunit of Sec61 complex (Sec61p, Sbh1p, and Sss1p); forms a channel for SRP-dependent protein import and retrograde transport of misfolded proteins out of the ER; with Sec63 complex allows SRP-independent protein import into ER 1.19450023815634 1309.44036865234 1355.97210693359 SEC61 6616 // SRP-dependent cotranslational protein-membrane targeting, translocation // traceable author statement /// 31204 // posttranslational protein membrane targeting, translocation // traceable author statement /// 45047 // protein-ER targeting // inferred from mutant phenotype 5784 // translocon complex // traceable author statement /// 5788 // endoplasmic reticulum lumen // inferred from direct assay /// 30176 // integral to endoplasmic reticulum membrane // inferred from direct assay /// 31206 // Sec complex-associated translocon complex // traceable author statement 8565 // protein transporter activity // traceable author statement 1235.79125976563 1195.60034179688 1423.28039550781 1476.15295410156 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR378C /GEN=SEC61 /DB_XREF=GI:6323411 /SEG=NC_001144:-875735,877177 /DEF=membrane component of ER protein translocation apparatus /NOTE=Sec61p; go_component: endoplasmic reticulum lumen [goid GO:0005788] [evidence IDA] [pmid 11294909]; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA] [pmid 1550957]; go_component: translocon [goid GO:0005784] [evidence TAS] [pmid 10564637]; go_function: protein transporter activity [goid GO:0008565] [evidence TAS] [pmid 10564637]; go_process: SRP-dependent cotranslational membrane targeting, translocation [goid GO:0006616] [evidence TAS] [pmid 10564637]; go_process: protein-ER targeting [goid GO:0045047] [evidence IMP] [pmid 1550957] --- --- --- --- --- S0004370 // span:33-55,70-92,113-135,145-167,241-263 // numtm:5 S0004370 // SEC61 SGDID:S0004370, Chr XII from 877177-875735, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018104 // cdna:Genscan chromosome:SGD1:XII:875735:877177:-1 // ensembl // 11 // --- /// GENEFINDER00000024563 // cdna:GeneFinder chromosome:SGD1:XII:875735:877177:-1 // ensembl // 11 // --- /// YLR378C // cdna:known chromosome:SGD1:XII:875735:877177:-1 gene:YLR378C // ensembl // 11 // --- --- No cerevisiae_gene 1.11455043372902 -1.03361567955756 -1.16507120977907 1.15171586160736 1.19450023815634 Max fold change below threshold 4 1.19450023815634 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772320_at YPL048W.S1 Translational cofactor elongation factor-1 gamma, participates in the regulation of GTP-binding protein EF-1 alpha, may play a redundant role in the regulation of protein synthesis or another GTP-dependent process 1.19345413483557 3435.23132324219 2932.76257324219 CAM1 6448 // regulation of translational elongation // inferred from genetic interaction /// 6448 // regulation of translational elongation // inferred from sequence similarity 5830 // cytosolic ribosome (sensu Eukaryota) // inferred from genetic interaction /// 5830 // cytosolic ribosome (sensu Eukaryota) // inferred from sequence similarity 3746 // translation elongation factor activity // inferred from sequence similarity 3090.19482421875 3642.69580078125 3227.76684570313 2775.33032226563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL048W /GEN=CAM1 /DB_XREF=GI:6325209 /SEG=NC_001148:+464396,465643 /DEF=Calcium and phospholipid binding protein homologous to translation elongation factor 1-gamma (EF-1gamma) /NOTE=Cam1p; go_component: cytosolic ribosome (sensu Eukarya) [goid GO:0005830] [evidence IGI,ISS] [pmid 8041634]; go_function: translation elongation factor activity [goid GO:0003746] [evidence ISS] [pmid 8041634]; go_process: regulation of translational elongation [goid GO:0006448] [evidence IGI,ISS] [pmid 8041634] --- --- --- --- --- --- S0005969 // CAM1 SGDID:S0005969, Chr XVI from 464398-465645, Verified ORF // sgd // 11 // --- /// GENSCAN00000017153 // cdna:Genscan chromosome:SGD1:XVI:464398:465645:1 // ensembl // 11 // --- /// GENEFINDER00000020750 // cdna:GeneFinder chromosome:SGD1:XVI:464398:465645:1 // ensembl // 11 // --- /// YPL048W // cdna:known chromosome:SGD1:XVI:464398:465645:1 gene:YPL048W // ensembl // 11 // --- --- No cerevisiae_gene -1.14039602996984 1.17879163224027 -1.19345413483557 1.04451888288925 -1.11345118072147 Max fold change below threshold 4 1.19345413483557 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773972_at YCL061C.S1 S-phase checkpoint protein found at replication forks, required for DNA replication; also required for Rad53p activation during DNA replication stress, where it forms a replication-pausing complex with Tof1p and is phosphorylated by Mec1p; protein involved in replication checkpoint 1.19327629688211 149.044464111328 185.539558410645 MRC1 76 // DNA replication checkpoint // inferred from mutant phenotype /// 76 // DNA replication checkpoint // inferred from physical interaction /// 76 // DNA replication checkpoint // inferred from genetic interaction /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 6348 // chromatin silencing at telomere // inferred from genetic interaction /// 30466 // chromatin silencing at silent mating-type cassette // inferred from mutant phenotype /// 30466 // chromatin silencing at silent mating-type cassette // inferred from genetic interaction 228 // nuclear chromosome // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay /// 5657 // replication fork // inferred from direct assay --- 169.189407348633 145.425521850586 152.66340637207 201.889709472656 0.018554700538516 0.0239257998764515 0.0239257998764515 0.00805663969367743 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL061C /GEN=MRC1 /DB_XREF=GI:10383754 /SEG=NC_001135:-18816,22106 /DEF=S-phase checkpoint protein found at replication forks, required for DNA replication; also required for Rad53p activation during DNA replication stress, where it forms a replication-pausing complex with Tof1p and is phosphorylated by Mec1p /NOTE=Mrc1p; go_component: nuclear chromosome [goid GO:0000228] [evidence IPI] [pmid 12944972]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_component: replication fork [goid GO:0005657] [evidence IDA] [pmid 12865299]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: DNA replication checkpoint [goid GO:0000076] [evidence IGI] [pmid 11331602]; go_process: DNA replication checkpoint [goid GO:0000076] [evidence IMP,IPI] [pmid 12944972]; go_process: chromatin silencing at silent mating-type cassette (sensu Fungi) [goid GO:0030466] [evidence IGI,IMP] [pmid 11331602]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IGI,IMP] [pmid 11331602] --- --- --- --- scop // a.4.1.Homeodomain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain // 9.30000019073486 --- S0000566 // MRC1 SGDID:S0000566, Chr III from 22106-18816, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022420 // cdna:Genscan chromosome:SGD1:III:18816:22106:-1 // ensembl // 11 // --- /// YCL061C // cdna:known chromosome:SGD1:III:18816:22106:-1 gene:YCL061C // ensembl // 11 // --- GENEFINDER00000023331 // ensembl // 8 // Cross Hyb Matching Probes No cerevisiae_gene -1.18865675104259 -1.16340931904967 1.00752363118424 -1.10825122646802 1.19327629688211 Max fold change below threshold 4 1.19327629688211 Max fold change below threshold PPPPPP No 4 0 PPPP 0 4 0 No No 3 < x
1770201_at YHR057C.S1 Peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; has a potential role in the secretory pathway 1.19318115265831 1836.15747070313 1819.78137207031 CPR2 --- --- 3755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay 1750.8271484375 1583.26098632813 2089.05395507813 1888.73559570313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR057C /GEN=CPR2 /DB_XREF=GI:6321848 /SEG=NC_001140:-218227,218844 /DEF=Peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; has a potential role in the secretory pathway /NOTE=Cpr2p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: peptidyl-prolyl cis-trans isomerase activity [goid GO:0003755] [evidence IDA] [pmid 1761234]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001099 // CPR2 SGDID:S0001099, Chr VIII from 218844-218227, reverse complement, Verified ORF // sgd // 9 // --- /// GENSCAN00000016603 // cdna:Genscan chromosome:SGD1:VIII:218227:218844:-1 // ensembl // 9 // --- /// GENEFINDER00000020251 // cdna:GeneFinder chromosome:SGD1:VIII:218227:218844:-1 // ensembl // 9 // --- /// YHR057C // cdna:known chromosome:SGD1:VIII:218227:218844:-1 gene:YHR057C // ensembl // 9 // --- --- No cerevisiae_gene -1.08433142699806 -1.10583609623199 1.1903931289173 1.19318115265831 1.0787675970119 Max fold change below threshold 4 1.19318115265831 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776267_at YOR210W.S1 RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III 1.19315066540658 967.479553222656 1034.80746459961 RPB10 6360 // transcription from RNA polymerase I promoter // traceable author statement /// 6366 // transcription from RNA polymerase II promoter // traceable author statement /// 6383 // transcription from RNA polymerase III promoter // traceable author statement 5665 // DNA-directed RNA polymerase II, core complex // traceable author statement /// 5666 // DNA-directed RNA polymerase III complex // traceable author statement /// 5736 // DNA-directed RNA polymerase I complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 1023.44781494141 1054.07214355469 880.886962890625 1046.16711425781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR210W /GEN=RPB10 /DB_XREF=GI:6324784 /SEG=NC_001147:+738320,738532 /DEF=RNA polymerase subunit, found in RNA polymerase complexes I, II, and III /NOTE=Rpb10p; go_component: DNA-directed RNA polymerase I complex [goid GO:0005736] [evidence TAS] [pmid 9774381]; go_component: DNA-directed RNA polymerase II, core complex [goid GO:0005665] [evidence TAS] [pmid 9774381]; go_component: DNA-directed RNA polymerase III complex [goid GO:0005666] [evidence TAS] [pmid 9774381]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 9774381]; go_process: transcription from Pol I promoter [goid GO:0006360] [evidence TAS]; go_process: transcription from Pol II promoter [goid GO:0006366] [evidence TAS]; go_process: transcription from Pol III promoter [goid GO:0006383] [evidence TAS] --- --- --- --- --- --- S0005736 // RPB10 SGDID:S0005736, Chr XV from 738320-738532, Verified ORF // sgd // 11 // --- /// YOR210W // cdna:known chromosome:SGD1:XV:738320:738532:1 gene:YOR210W // ensembl // 11 // --- --- No cerevisiae_gene 1.19315066540658 1.02992270652807 1.04185018650516 -1.16183784986778 1.0221987862837 Max fold change below threshold 4 1.19315066540658 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771897_at YPR165W.S1 GTP-binding protein of the rho subfamily of Ras-like proteins, involved in establishment of cell polarity; regulates protein kinase C (Pkc1p) and the cell wall synthesizing enzyme 1,3-beta-glucan synthase (Fks1p and Gsc2p) 1.19195939753796 3644.75988769531 3869.36279296875 RHO1 6897 // endocytosis // inferred from mutant phenotype /// 7015 // actin filament organization // traceable author statement /// 7047 // cell wall organization and biogenesis // inferred from physical interaction /// 7117 // budding cell bud growth // inferred from mutant phenotype /// 7264 // small GTPase mediated signal transduction // inferred from mutant phenotype /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from mutant phenotype 148 // 1,3-beta-glucan synthase complex // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5777 // peroxisome // inferred from direct assay /// 5934 // bud tip // inferred from direct assay /// 5935 // bud neck // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay 3924 // GTPase activity // traceable author statement /// 4871 // signal transducer activity // inferred from mutant phenotype /// 4871 // signal transducer activity // inferred from physical interaction 4156.9150390625 3802.05615234375 3487.46362304688 3581.810546875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR165W /GEN=RHO1 /DB_XREF=GI:6325423 /SEG=NC_001148:+875362,875991 /DEF=Gtp-binding protein of the rho subfamily of ras-like proteins /NOTE=Rho1p; go_component: 1,3-beta-glucan synthase complex [goid GO:0000148] [evidence IDA] [pmid 8602515]; go_component: bud neck [goid GO:0005935] [evidence IDA] [pmid 9891811]; go_component: bud tip [goid GO:0005934] [evidence IDA] [pmid 9891811]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 12660244]; go_function: GTPase activity [goid GO:0003924] [evidence TAS] [pmid 9891811]; go_function: signal transducer activity [goid GO:0004871] [evidence IMP,IPI] [pmid 9891811]; go_process: actin filament organization [goid GO:0007015] [evidence TAS] [pmid 9891811]; go_process: bud growth [goid GO:0007117] [evidence IMP] [pmid 9891811]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IPI] [pmid 9891811]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IMP] [pmid 9891811]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence IMP] [pmid 9891811] --- --- --- --- --- --- S0006369 // RHO1 SGDID:S0006369, Chr XVI from 875364-875993, Verified ORF // sgd // 11 // --- /// GENSCAN00000017312 // cdna:Genscan chromosome:SGD1:XVI:875364:875993:1 // ensembl // 11 // --- /// GENEFINDER00000020817 // cdna:GeneFinder chromosome:SGD1:XVI:875364:875993:1 // ensembl // 11 // --- /// YPR165W // cdna:known chromosome:SGD1:XVI:875364:875993:1 gene:YPR165W // ensembl // 11 // --- --- No cerevisiae_gene -1.06001604711137 -1.0933334155257 -1.17795878647869 -1.19195939753796 -1.16056251012194 Max fold change below threshold 4 1.19195939753796 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773590_at YDR071C.S1 Polyamine acetyltransferase; acetylates polyamines such as putrescine, spermidine and spermine; may be involved in transcription and/or DNA replication via regulation of levels of polyamines bound to chromosomal DNA 1.19174882643831 1709.55847167969 1515.3349609375 PAA1 6325 // establishment and/or maintenance of chromatin architecture // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4059 // aralkylamine N-acetyltransferase activity // inferred from direct assay /// 4145 // diamine N-acetyltransferase activity // inferred from direct assay 1600.41247558594 1881.79614257813 1537.32080078125 1430.25744628906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR071C /GEN=DOA4 /DB_XREF=GI:6320276 /SEG=NC_001136:-588823,589398 /DEF=Ydr071cp /NOTE=Ydr070cp --- --- --- --- --- --- S0002478 // PAA1 SGDID:S0002478, Chr IV from 589399-588824, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000023459 // cdna:GeneFinder chromosome:SGD1:IV:588824:589399:-1 // ensembl // 11 // --- /// YDR071C // cdna:known chromosome:SGD1:IV:588824:589399:-1 gene:YDR071C // ensembl // 11 // --- --- No cerevisiae_gene -1.19174882643831 1.17581946609681 -1.07093315981334 -1.04104001895546 -1.11896811286553 Max fold change below threshold 4 1.19174882643831 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772837_at YBR173C.S1 Short-lived chaperone required for correct maturation of the 20S proteasome; degraded by proteasome upon completion of its assembly; involved in ubiquitin-mediated proteolysis; mutant defective in degradation of short-lived proteins 1.19164243598372 2079.09619140625 1996.85809326172 UMP1 6511 // ubiquitin-dependent protein catabolism // inferred from mutant phenotype /// 6974 // response to DNA damage stimulus // inferred from direct assay /// 6974 // response to DNA damage stimulus // inferred from expression pattern /// 43248 // proteasome assembly // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 8538 // proteasome activator activity // inferred from mutant phenotype /// 8538 // proteasome activator activity // inferred from direct assay 1998.55004882813 1910.65185546875 2247.54052734375 1995.16613769531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR173C /GEN=UMP1 /DB_XREF=GI:6319650 /SEG=NC_001134:-581683,582129 /DEF=Involved in ubiquitin-mediated proteolysis /NOTE=Ump1p; go_component: proteasome core complex (sensu Eukarya) [goid GO:0005839] [evidence IGI,IPI] [pmid 9491890]; go_function: chaperone activity [goid GO:0003754] [evidence IPI] [pmid 9491890]; go_function: proteasome activator activity [goid GO:0008538] [evidence IDA,IMP] [pmid 9491890]; go_process: protein catabolism [goid GO:0030163] [evidence IMP] [pmid 9491890] --- --- --- --- --- --- S0000377 // UMP1 SGDID:S0000377, Chr II from 582167-581721, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000021280 // cdna:Genscan chromosome:SGD1:II:581721:582167:-1 // ensembl // 10 // --- /// GENEFINDER00000022343 // cdna:GeneFinder chromosome:SGD1:II:581721:582167:-1 // ensembl // 10 // --- /// YBR173C // cdna:known chromosome:SGD1:II:581721:582167:-1 gene:YBR173C // ensembl // 10 // --- --- No cerevisiae_gene -1.19164243598372 -1.04600429592015 -1.01874743907208 1.12458556074771 -1.00169605481412 Max fold change below threshold 4 1.19164243598372 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773316_at YEL063C.S1 Plasma membrane arginine permease, requires phosphatidyl ethanolamine (PE) for localization, exclusively associated with lipid rafts; mutation confers canavanine resistance 1.1915321997071 1459.30169677734 1632.71362304688 CAN1 15802 // basic amino acid transport // inferred from direct assay 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from sequence similarity /// 45121 // lipid raft // inferred from direct assay 5288 // arginine permease activity // traceable author statement /// 5293 // lysine permease activity // traceable author statement /// 15174 // basic amino acid transporter activity // inferred from direct assay 1592.93237304688 1336.87731933594 1581.72607421875 1672.49487304688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YEL063C /GEN=CAN1 /DB_XREF=GI:6320772 /SEG=NC_001137:-31694,33466 /DEF=arginine permease /NOTE=Can1p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 10654085]; go_function: arginine permease activity [goid GO:0005288] [evidence TAS] [pmid 12456008]; go_function: basic amino acid transporter activity [goid GO:0015174] [evidence IDA] [pmid 10654085]; go_function: lysine permease activity [goid GO:0005293] [evidence TAS] [pmid 12456008]; go_process: basic amino acid transport [goid GO:0015802] [evidence IDA] [pmid 10654085] --- --- --- --- --- S0000789 // span:93-115,170-192,199-218,238-260,324-346,377-399,420-442,452-474,494-516,526-548 // numtm:10 S0000789 // CAN1 SGDID:S0000789, Chr V from 33466-31694, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016752 // cdna:Genscan chromosome:SGD1:V:31694:33466:-1 // ensembl // 11 // --- /// GENEFINDER00000019684 // cdna:GeneFinder chromosome:SGD1:V:31694:33466:-1 // ensembl // 11 // --- /// YEL063C // cdna:known chromosome:SGD1:V:31694:33466:-1 gene:YEL063C // ensembl // 11 // --- --- No cerevisiae_gene 1.1390019174972 -1.1915321997071 1.09359167256609 -1.00708485433147 1.04994719257781 Max fold change below threshold 4 1.1915321997071 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770746_at YGL057C.S1 Hypothetical protein 1.19144594021513 342.180892944336 397.280426025391 --- --- 5739 // mitochondrion // inferred from direct assay --- 377.295806884766 356.248260498047 328.113525390625 417.265045166016 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL057C /GEN=RAD6 /DB_XREF=GI:6321381 /SEG=NC_001139:-394970,395833 /DEF=Hypothetical ORF /NOTE=Ygl057cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003025 // YGL057C SGDID:S0003025, Chr VII from 395835-394972, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YGL057C // cdna:known chromosome:SGD1:VII:394972:395835:-1 gene:YGL057C // ensembl // 11 // --- --- No cerevisiae_gene 1.19144594021513 -1.05908112044475 1.08687406825515 -1.14989409971926 1.1059360786733 Max fold change below threshold 4 1.19144594021513 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780215_at YGR070W.S1 GDP/GTP exchange protein (GEP) for Rho1p; mutations are synthetically lethal with mutations in rom2, which also encodes a GEP 1.19133996392886 1153.42565917969 1362.76324462891 ROM1 7015 // actin filament organization // traceable author statement /// 7047 // cell wall organization and biogenesis // inferred from physical interaction /// 7117 // budding cell bud growth // inferred from physical interaction /// 7264 // small GTPase mediated signal transduction // inferred from physical interaction /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction 5622 // intracellular // traceable author statement 4871 // signal transducer activity // inferred from physical interaction /// 5089 // Rho guanyl-nucleotide exchange factor activity // inferred from mutant phenotype 1325.61584472656 1112.7099609375 1194.14135742188 1399.91064453125 0.00122069998178631 0.000732421991415322 0.00122069998178631 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR070W /GEN=ROM1 /DB_XREF=GI:6321507 /SEG=NC_001139:+627808,631275 /DEF=GDP/GTP exchange protein (GEP) for Rho1p; mutations are synthetically lethal with mutations in rom2, which also encodes a GEP /NOTE=Rom1p; go_component: intracellular [goid GO:0005622] [evidence TAS] [pmid 9891811]; go_function: Rho guanyl-nucleotide exchange factor activity [goid GO:0005089] [evidence IMP] [pmid 9891811]; go_function: signal transducer activity [goid GO:0004871] [evidence IPI] [pmid 9891811]; go_process: actin filament organization [goid GO:0007015] [evidence TAS] [pmid 9891811]; go_process: bud growth [goid GO:0007117] [evidence IPI] [pmid 9891811]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IPI] [pmid 9891811]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IPI] [pmid 9891811]; go_process: small GTPase mediated signal transduction [goid GO:0007264] [evidence IPI] [pmid 9891811] --- --- --- --- --- --- S0003302 // ROM1 SGDID:S0003302, Chr VII from 627810-631277, Verified ORF // sgd // 11 // --- /// GENSCAN00000019393 // cdna:Genscan chromosome:SGD1:VII:627810:631277:1 // ensembl // 11 // --- /// YGR070W // cdna:known chromosome:SGD1:VII:627810:631277:1 gene:YGR070W // ensembl // 11 // --- --- No cerevisiae_gene -1.12924799886196 -1.19133996392886 1.09431982942038 -1.11009960126374 1.05604549772111 Max fold change below threshold 4 1.19133996392886 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775719_at YOR005C.S1 DNA ligase required for nonhomologous end-joining (NHEJ), forms stable heterodimer with required cofactor Lif1p, catalyzes DNA ligation as part of a complex with Lif1p and Nej1p; involved in meiosis, not essential for vegetative growth 1.19049033545227 259.699508666992 332.616912841797 DNL4 6303 // double-strand break repair via nonhomologous end-joining // inferred from mutant phenotype /// 6303 // double-strand break repair via nonhomologous end-joining // inferred from direct assay 5634 // nucleus // traceable author statement 3910 // DNA ligase (ATP) activity // inferred from direct assay 303.691741943359 263.819885253906 255.579132080078 361.542083740234 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR005C /GEN=DNL4 /DB_XREF=GI:6324578 /SEG=NC_001147:-334509,337343 /DEF=DNA ligase required for nonhomologous end-joining (NHEJ), forms stable heterodimer with required cofactor Lif1p, catalyzes DNA ligation as part of a complex with Lif1p and Nej1p; involved in meiosis, not essential for vegetative growth /NOTE=Dnl4p; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 9242411]; go_function: DNA ligase (ATP) activity [goid GO:0003910] [evidence IDA] [pmid 9271115]; go_process: double-strand break repair via nonhomologous end-joining [goid GO:0006303] [evidence IMP] [pmid 9242411] --- --- --- --- --- --- S0005531 // DNL4 SGDID:S0005531, Chr XV from 337343-334509, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017470 // cdna:Genscan chromosome:SGD1:XV:334509:337343:-1 // ensembl // 11 // --- /// YOR005C // cdna:known chromosome:SGD1:XV:334509:337343:-1 gene:YOR005C // ensembl // 11 // --- --- No cerevisiae_gene -1.12724618168229 -1.15113287101569 -1.02159330173503 -1.1882493671205 1.19049033545227 Max fold change below threshold 4 1.19049033545227 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779159_at YOR288C.S1 Member of the protein disulfide isomerase (PDI) family; overexpression suppresses the defect in maturation of carboxypeptidase Y, and defects in other essential Pdi1p functions, caused by PDI1 deletion 1.18965064092401 1203.51086425781 1208.13415527344 MPD1 6457 // protein folding // inferred from genetic interaction 324 // vacuole (sensu Fungi) // inferred from direct assay 3756 // protein disulfide isomerase activity // inferred from mutant phenotype /// 3756 // protein disulfide isomerase activity // traceable author statement 1147.19702148438 1129.81274414063 1277.208984375 1269.0712890625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR288C /GEN=MPD1 /DB_XREF=GI:6324862 /SEG=NC_001147:-852118,853074 /DEF=Disulfide isomerase related protein /NOTE=Mpd1p; go_component: vacuole (sensu Fungi) [goid GO:0000324] [evidence IDA] [pmid 14562095]; go_function: protein disulfide isomerase activity [goid GO:0003756] [evidence IMP,TAS] [pmid 11157982]; go_process: protein folding [goid GO:0006457] [evidence IGI] [pmid 11157982] --- --- --- --- --- --- S0005814 // MPD1 SGDID:S0005814, Chr XV from 853074-852118, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017733 // cdna:Genscan chromosome:SGD1:XV:852118:853029:-1 // ensembl // 11 // --- /// YOR288C // cdna:known chromosome:SGD1:XV:852118:853074:-1 gene:YOR288C // ensembl // 11 // --- --- No cerevisiae_gene 1.10191950531601 -1.01538686603945 1.18965064092401 1.11333010847814 1.10623656206885 Max fold change below threshold 4 1.18965064092401 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772350_at YGR175C.S1 Squalene epoxidase, catalyzes the epoxidation of squalene to 2,3-oxidosqualene; plays an essential role in the ergosterol-biosynthesis pathway and is the specific target of the antifungal drug terbinafine 1.18898237066294 3402.392578125 3067.88488769531 ERG1 6696 // ergosterol biosynthesis // traceable author statement 5783 // endoplasmic reticulum // traceable author statement /// 5811 // lipid particle // inferred from direct assay 4506 // squalene monooxygenase activity // traceable author statement /// 8144 // drug binding // inferred from mutant phenotype 3298.02490234375 3673.56811523438 3131.21704101563 2837.74487304688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR175C /GEN=ERG1 /DB_XREF=GI:6321614 /SEG=NC_001139:-846936,848426 /DEF=Squalene epoxidase, catalyzes the epoxidation of squalene to 2,3-oxidosqualene; plays an essential role in the ergosterol-biosynthesis pathway and is the specific target of the antifungal drug terbinafine /NOTE=Erg1p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence TAS]; go_component: lipid particle [goid GO:0005811] [evidence IDA] [pmid 9450962]; go_function: squalene monooxygenase activity [goid GO:0004506] [evidence TAS]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence TAS] --- --- --- --- scop // a.4.5.CAP C-terminal domain-like // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; CAP C-terminal domain-like // 0.449999988079071 S0003407 // span:15-37,464-486 // numtm:2 S0003407 // ERG1 SGDID:S0003407, Chr VII from 848428-846938, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000021559 // cdna:GeneFinder chromosome:SGD1:VII:846689:850441:-1 // ensembl // 11 // --- /// GENSCAN00000019478 // cdna:Genscan chromosome:SGD1:VII:846938:848428:-1 // ensembl // 11 // --- /// YGR175C // cdna:known chromosome:SGD1:VII:846938:848428:-1 gene:YGR175C // ensembl // 11 // --- --- No cerevisiae_gene -1.00933066244864 1.1138691259195 -1.18898237066294 -1.0532725324189 -1.16219922857359 Max fold change below threshold 4 1.18898237066294 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775127_at SPBC530.11c.S1 --- 1.18807519146871 --- --- --- --- 6.9065523147583 7.46901655197144 7.52022695541382 5.99586629867554 0.334473013877869 0.334473013877869 0.0676269978284836 0.0107421996071935 A A A P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPBC530.11c /DEF=transcription factor (predicted) --- --- --- --- --- --- SPBC530.11c // |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual // sanger // 11 // --- --- No No 1.18807519146871 1.08143922055165 -1.01249087495123 1.08885397701892 -1.15188564432865 Max fold change below threshold 4 1.18807519146871 Max fold change below threshold APAAAP No 4 0 AAAP 3 1 0 No No x = 1
1772848_at YAL028W.S1 Tail-anchored endoplasmic reticulum membrane protein, interacts with homolog Frt1p but is not a substrate of calcineurin (unlike Frt1p), promotes growth in conditions of high Na+, alkaline pH, or cell wall stress; potential Cdc28p substrate 1.18771773669555 1660.49975585938 1435.97033691406 FRT2 6950 // response to stress // inferred from mutant phenotype 5783 // endoplasmic reticulum // inferred from direct assay --- 1427.26574707031 1695.18884277344 1625.81066894531 1444.67492675781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YAL028W /GEN=MYO4 /DB_XREF=GI:6319291 /SEG=NC_001133:+92903,94489 /DEF=Exhibits physical and genetic interactions with FRT1 and genetic interactions with TCP1; contains a C-terminal transmembrane domain and shows localization to the plasma membrane, the ER, and cytoplasmic vesicular or granule-like structures /NOTE=Yal028wp --- --- --- --- --- S0000026 // span:508-525 // numtm:1 S0000026 // FRT2 SGDID:S0000026, Chr I from 92901-94487, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018225 // cdna:GeneFinder chromosome:SGD1:I:92901:94487:1 // ensembl // 11 // --- /// GENSCAN00000020354 // cdna:Genscan chromosome:SGD1:I:92901:94487:1 // ensembl // 11 // --- /// YAL028W // cdna:known chromosome:SGD1:I:92901:94487:1 gene:YAL028W // ensembl // 11 // --- --- No cerevisiae_gene 1.13247696469455 1.18771773669555 1.03458778920338 1.13910858736892 1.01219757408404 Max fold change below threshold 4 1.18771773669555 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777891_at YKL179C.S1 Golgi membrane protein with similarity to mammalian CASP; genetic interactions with GOS1 (encoding a Golgi snare protein) suggest a role in Golgi function 1.18725565345406 900.402099609375 964.859558105469 COY1 48193 // Golgi vesicle transport // inferred from genetic interaction 139 // Golgi membrane // inferred from genetic interaction --- 882.255859375 830.653625488281 970.150573730469 1047.46325683594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL179C /GEN=COY1 /DB_XREF=GI:6322669 /SEG=NC_001143:-110469,112508 /DEF=Golgi membrane protein with similarity to mammalian CASP; genetic interactions with GOS1 (encoding a Golgi snare protein) suggest a role in Golgi function /NOTE=Coy1p; go_component: Golgi membrane [goid GO:0000139] [evidence IGI] [pmid 12429822]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: Golgi vesicle transport [goid GO:0048193] [evidence IGI] [pmid 12429822] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 0.200000002980232 S0001662 // span:615-637 // numtm:1 S0001662 // COY1 SGDID:S0001662, Chr XI from 112508-110469, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018286 // cdna:Genscan chromosome:SGD1:XI:110469:112508:-1 // ensembl // 11 // --- /// GENEFINDER00000022964 // cdna:GeneFinder chromosome:SGD1:XI:110469:112508:-1 // ensembl // 11 // --- /// YKL179C // cdna:known chromosome:SGD1:XI:110469:112508:-1 gene:YKL179C // ensembl // 11 // --- --- No cerevisiae_gene -1.04046181196327 -1.06212244466686 1.00536607706186 1.09962497094407 1.18725565345406 Max fold change below threshold 4 1.18725565345406 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773383_at YER169W.S1 Transcriptional repressor of PHR1, which is a photolyase induced by DNA damage; binds to AG(4) (C(4)T) sequence upstream of PHR1; Rph1p phosphorylation during DNA damage is under control of the MEC1-RAD53 pathway 1.18593359042751 1861.59533691406 1735.18994140625 RPH1 122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 6281 // DNA repair // inferred from mutant phenotype 5634 // nucleus // inferred from curator 16566 // specific transcriptional repressor activity // inferred from direct assay 1682.96484375 1948.78002929688 1774.41064453125 1787.4150390625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER169W /GEN=RPH1 /DB_XREF=GI:6321017 /SEG=NC_001137:+523364,525754 /DEF=Transcriptional repressor of PHR1, which is a photolyase induced by DNA damage; binds to AG(4) (C(4)T) sequence upstream of PHR1; Rph1p phosphorylation during DNA damage is under control of the MEC1-RAD53 pathway /NOTE=Rph1p; go_component: nucleus [goid GO:0005634] [evidence IC] [pmid 10523651]; go_function: specific transcriptional repressor activity [goid GO:0016566] [evidence IDA] [pmid 10523651]; go_process: DNA repair [goid GO:0006281] [evidence IMP] [pmid 10523651]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IDA] [pmid 10523651] --- --- --- --- --- --- S0000971 // RPH1 SGDID:S0000971, Chr V from 523364-525754, Verified ORF // sgd // 11 // --- /// GENSCAN00000016948 // cdna:Genscan chromosome:SGD1:V:523364:525754:1 // ensembl // 11 // --- /// YER169W // cdna:known chromosome:SGD1:V:523364:525754:1 gene:YER169W // ensembl // 11 // --- --- No cerevisiae_gene -1.08051564370664 1.15794458602866 -1.18593359042751 1.05433613252282 1.0620632069056 Max fold change below threshold 4 1.18593359042751 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780060_at YDR434W.S1 Transmembrane protein subunit of the glycosylphosphatidylinositol transamidase complex that adds GPIs to newly synthesized proteins; human PIG-Sp homolog 1.18558391812649 1081.56744384766 1204.84582519531 GPI17 16255 // attachment of GPI anchor to protein // inferred from sequence similarity /// 16255 // attachment of GPI anchor to protein // inferred from mutant phenotype 42765 // GPI-anchor transamidase complex // inferred from mutant phenotype /// 42765 // GPI-anchor transamidase complex // inferred from sequence similarity 3923 // GPI-anchor transamidase activity // inferred from sequence similarity /// 3923 // GPI-anchor transamidase activity // inferred from mutant phenotype 1167.88854980469 1046.52795410156 1116.60693359375 1241.80310058594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR434W /GEN=GPI17 /DB_XREF=GI:6320642 /SEG=NC_001136:+1331225,1332829 /DEF=Transmembrane protein subunit of the glycosylphosphatidylinositol transamidase complex that adds GPIs to newly synthesized proteins; human PIG-Sp homolog /NOTE=Gpi17p; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IMP,ISS] [pmid 11483512]; go_function: GPI-anchor transamidase activity [goid GO:0003923] [evidence IMP,ISS] [pmid 11483512]; go_process: attachment of GPI anchor to protein [goid GO:0016255] [evidence IMP,ISS] [pmid 11483512] --- --- --- --- --- S0002842 // span:9-27,473-495 // numtm:2 S0002842 // GPI17 SGDID:S0002842, Chr IV from 1331227-1332831, Verified ORF // sgd // 11 // --- /// GENSCAN00000025441 // cdna:Genscan chromosome:SGD1:IV:1331227:1332831:1 // ensembl // 11 // --- /// YDR434W // cdna:known chromosome:SGD1:IV:1331227:1332831:1 gene:YDR434W // ensembl // 11 // --- GENEFINDER00000023731 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene 1.08526756070102 -1.11596498232798 1.18558391812649 -1.04592629211596 1.06328904482676 Max fold change below threshold 4 1.18558391812649 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780012_at YDL001W.S1 Cytoplasmic protein required for sporulation 1.18529427635669 611.459381103516 632.943756103516 RMD1 --- 5737 // cytoplasm // inferred from direct assay --- 607.396301269531 593.989929199219 628.928833007813 658.4912109375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL001W /GEN=RMD1 /DB_XREF=GI:6320203 /SEG=NC_001136:+447981,449273 /DEF=Cytoplasmic protein required for sporulation /NOTE=Rmd1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002159 // span:401-423 // numtm:1 S0002159 // RMD1 SGDID:S0002159, Chr IV from 447981-449273, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023518 // cdna:GeneFinder chromosome:SGD1:IV:447981:449273:1 // ensembl // 11 // --- /// GENSCAN00000025098 // cdna:Genscan chromosome:SGD1:IV:447981:449273:1 // ensembl // 11 // --- /// YDL001W // cdna:known chromosome:SGD1:IV:447981:449273:1 gene:YDL001W // ensembl // 11 // --- --- No cerevisiae_gene 1.18529427635669 -1.0225700326071 -1.01907466131903 1.0354505480084 1.08412120646961 Max fold change below threshold 4 1.18529427635669 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773105_at YNR035C.S1 Subunit of the ARP2/3 complex, which is required for the motility and integrity of cortical actin patches; required for cortical localization of calmodulin 1.1844596219683 2804.88305664063 3108.50634765625 ARC35 1 // mitochondrion inheritance // traceable author statement /// 226 // microtubule cytoskeleton organization and biogenesis // inferred from genetic interaction /// 226 // microtubule cytoskeleton organization and biogenesis // traceable author statement /// 226 // microtubule cytoskeleton organization and biogenesis // inferred from physical interaction /// 226 // microtubule cytoskeleton organization and biogenesis // inferred from mutant phenotype /// 30036 // actin cytoskeleton organization and biogenesis // inferred from genetic interaction /// 30036 // actin cytoskeleton organization and biogenesis // inferred from mutant phenotype /// 30036 // actin cytoskeleton organization and biogenesis // inferred from physical interaction /// 30036 // actin cytoskeleton organization and biogenesis // traceable author statement 5829 // cytosol // inferred from physical interaction /// 5885 // Arp2/3 protein complex // inferred from direct assay 5198 // structural molecule activity // inferred from mutant phenotype 2951.7060546875 3022.17016601563 2587.59594726563 3265.306640625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR035C /GEN=ARC35 /DB_XREF=GI:6324363 /SEG=NC_001146:-693018,694046 /DEF=Arp complex subunit /NOTE=Arc35p; go_component: Arp2/3 protein complex [goid GO:0005885] [evidence IDA] [pmid 9210376]; go_function: structural molecule activity [goid GO:0005198] [evidence IMP] [pmid 10377407]; go_process: cell growth and/or maintenance [goid GO:0008151] [evidence IDA] [pmid 10377407] --- --- --- --- --- --- S0005318 // ARC35 SGDID:S0005318, Chr XIV from 694047-693019, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000020065 // cdna:Genscan chromosome:SGD1:XIV:693019:694047:-1 // ensembl // 11 // --- /// GENEFINDER00000020534 // cdna:GeneFinder chromosome:SGD1:XIV:693019:694047:-1 // ensembl // 11 // --- /// YNR035C // cdna:known chromosome:SGD1:XIV:693019:694047:-1 gene:YNR035C // ensembl // 11 // --- --- No cerevisiae_gene -1.1844596219683 1.02387233349887 -1.14762662828268 -1.14071366428234 1.10624384004616 Max fold change below threshold 4 1.1844596219683 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771546_at YMR004W.S1 Protein required for sorting proteins to the vacuole; overproduction of Mvp1p suppresses several dominant VPS1 mutations; Mvp1p and Vps1p act in concert to promote membrane traffic to the vacuole 1.18429216154198 1149.65283203125 1263.05706787109 MVP1 6623 // protein-vacuolar targeting // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay --- 1197.77331542969 1132.53454589844 1166.77111816406 1328.3408203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR004W /GEN=MVP1 /DB_XREF=GI:6323646 /SEG=NC_001145:+274017,275552 /DEF=Protein required for sorting proteins to the vacuole /NOTE=Mvp1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 7862158]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein-vacuolar targeting [goid GO:0006623] [evidence IMP] [pmid 7862158] --- --- --- --- --- --- S0004606 // MVP1 SGDID:S0004606, Chr XIII from 274017-275552, Verified ORF // sgd // 11 // --- /// GENSCAN00000018721 // cdna:Genscan chromosome:SGD1:XIII:274017:275552:1 // ensembl // 11 // --- /// GENEFINDER00000021980 // cdna:GeneFinder chromosome:SGD1:XIII:274017:275552:1 // ensembl // 11 // --- /// YMR004W // cdna:known chromosome:SGD1:XIII:274017:275552:1 gene:YMR004W // ensembl // 11 // --- --- No cerevisiae_gene -1.18429216154198 -1.05760422034588 -1.00500466184732 -1.02657093305018 1.1090085270734 Max fold change below threshold 4 1.18429216154198 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775676_at YGR072W.S1 Component of the nonsense-mediated mRNA decay (NMD) pathway, along with Nam7p and Nmd2p; involved in decay of mRNA containing nonsense codons 1.18410686022209 226.122192382813 240.283630371094 UPF3 184 // mRNA catabolism, nonsense-mediated decay // traceable author statement /// 6402 // mRNA catabolism // traceable author statement /// 6452 // translational frameshifting // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // traceable author statement /// 5844 // polysome // inferred from direct assay --- 230.228851318359 257.811889648438 194.432495117188 250.338409423828 0.000244141003349796 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR072W /GEN=UPF3 /DB_XREF=GI:6321509 /SEG=NC_001139:+634306,635469 /DEF=Component of the nonsense-mediated mRNA decay (NMD) pathway, along with Nam7p and Nmd2p /NOTE=Upf3p; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 11238889]; go_component: polysome [goid GO:0005844] [evidence IDA] [pmid 9268361]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mRNA catabolism [goid GO:0006402] [evidence TAS] [pmid 9841679]; go_process: mRNA catabolism, nonsense-mediated [goid GO:0000184] [evidence TAS] [pmid 10098411] --- --- --- --- --- --- S0003304 // UPF3 SGDID:S0003304, Chr VII from 634308-635471, Verified ORF // sgd // 10 // --- /// GENEFINDER00000021652 // cdna:GeneFinder chromosome:SGD1:VII:634851:635471:1 // ensembl // 10 // --- /// YGR072W // cdna:known chromosome:SGD1:VII:634308:635471:1 gene:YGR072W // ensembl // 10 // --- --- No cerevisiae_gene -1.09454248452068 1.11980704491261 -1.12231397717076 -1.18410686022209 1.08734595160561 Max fold change below threshold 4 1.18410686022209 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775221_at YBR255C-A.S1 Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36. 1.18404876271158 561.945007324219 588.766021728516 --- --- --- --- 569.165100097656 531.578308105469 592.311706542969 608.366943359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR255C-A /GEN=TRS20 /DB_XREF=GI:41629679 /SEG=NC_001134:-726575,727031 /DEF=Hypothetical ORF identified by homology. See FEBS Letters [2000] 487:31-36. /NOTE=Ybr255c-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0007649 // span:22-44 // numtm:1 S0007649 // YBR255C-A SGDID:S0007649, Chr II from 727069-727007,726912-726613, reverse complement, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YBR255C-A // cdna:known chromosome:SGD1:II:726613:727069:-1 gene:YBR255C-A // ensembl // 11 // --- --- No cerevisiae_gene -1.18404876271158 -1.07070791155144 -1.00426228805542 1.04066764887963 1.0688760488916 Max fold change below threshold 4 1.18404876271158 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769464_at YGR130C.S1 Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern 1.18318683773325 2853.69006347656 2459.11303710938 --- --- 5737 // cytoplasm // inferred from direct assay --- 2497.44750976563 2954.94702148438 2752.43310546875 2420.77856445313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR130C /GEN=SYF2 /DB_XREF=GI:6321569 /SEG=NC_001139:-751397,753847 /DEF=Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern /NOTE=Ygr130cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003362 // YGR130C SGDID:S0003362, Chr VII from 753849-751399, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019441 // cdna:Genscan chromosome:SGD1:VII:751390:753849:-1 // ensembl // 11 // --- /// GENEFINDER00000021385 // cdna:GeneFinder chromosome:SGD1:VII:751390:753849:-1 // ensembl // 11 // --- /// YGR130C // cdna:known chromosome:SGD1:VII:751399:753849:-1 gene:YGR130C // ensembl // 11 // --- --- No cerevisiae_gene -1.10563283920984 1.18318683773325 -1.07878860676849 1.10209848043095 -1.03167119307743 Max fold change below threshold 4 1.18318683773325 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769516_at YDL086W.S1 Hypothetical protein 1.18280167678937 3433.78173828125 3159.27990722656 --- --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 8806 // carboxymethylenebutenolidase activity // inferred from sequence similarity 3362.75830078125 3793.13916015625 3074.42431640625 2955.80151367188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL086W /GEN=LUC7 /DB_XREF=GI:6320117 /SEG=NC_001136:+301413,302234 /DEF=Hypothetical ORF /NOTE=Ydl086wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_function: carboxymethylenebutenolidase activity [goid GO:0008806] [evidence ISS] [pmid 10592175]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002244 // YDL086W SGDID:S0002244, Chr IV from 301413-302234, Uncharacterized ORF // sgd // 10 // --- /// GENEFINDER00000023721 // cdna:GeneFinder chromosome:SGD1:IV:301413:302234:1 // ensembl // 10 // --- /// GENSCAN00000025037 // cdna:Genscan chromosome:SGD1:IV:301413:302234:1 // ensembl // 10 // --- /// YDL086W // cdna:known chromosome:SGD1:IV:301413:302234:1 gene:YDL086W // ensembl // 10 // --- YDL086C-A // ensembl // 4 // Negative Strand Matching Probes No cerevisiae_gene -1.18280167678937 1.12798447609958 -1.15227109083987 -1.093784707217 -1.13768068837742 Max fold change below threshold 4 1.18280167678937 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771952_at YJL123C.S1 Hypothetical protein 1.18258136011884 721.936096191406 769.538604736328 --- --- 5737 // cytoplasm // inferred from direct assay /// 5794 // Golgi apparatus // inferred from direct assay /// 30137 // COPI-coated vesicle // inferred from direct assay --- 731.896240234375 618.897155761719 824.975036621094 807.180969238281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL123C /GEN=LSM1 /DB_XREF=GI:6322338 /SEG=NC_001142:-187924,189360 /DEF=Hypothetical ORF /NOTE=Yjl123cp; go_component: COPI-coated vesicle [goid GO:0030137] [evidence IDA] [pmid 14562095]; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 14562095]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003659 // YJL123C SGDID:S0003659, Chr X from 189360-187924, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000024295 // cdna:GeneFinder chromosome:SGD1:X:187924:189360:-1 // ensembl // 11 // --- /// YJL123C // cdna:known chromosome:SGD1:X:187924:189360:-1 gene:YJL123C // ensembl // 11 // --- --- No cerevisiae_gene -1.17963158634607 -1.18258136011884 1.1273507287063 1.1271748524858 1.10286257103848 Max fold change below threshold 4 1.18258136011884 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775164_at YOR304W.S1 Member of the imitation-switch (ISWI) class of ATP-dependent chromatin remodeling complexes; ATPase component that, with Itc1p, forms a complex required for repression of a-specific genes, INO1, and early meiotic genes during mitotic growth 1.1822104674015 1093.07424926758 1156.79943847656 ISW2 6338 // chromatin remodeling // inferred from genetic interaction /// 6338 // chromatin remodeling // inferred from mutant phenotype /// 6338 // chromatin remodeling // inferred from physical interaction /// 6348 // chromatin silencing at telomere // inferred from mutant phenotype /// 16584 // nucleosome spacing // inferred from direct assay /// 46020 // negative regulation of transcription from RNA polymerase II promoter by pheromones // inferred from mutant phenotype 5634 // nucleus // inferred from physical interaction /// 8623 // chromatin accessibility complex // inferred from physical interaction /// 8623 // chromatin accessibility complex // inferred from sequence similarity 16887 // ATPase activity // inferred from sequence similarity /// 16887 // ATPase activity // traceable author statement 1060.20886230469 1175.89868164063 1010.24981689453 1253.39001464844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR304W /GEN=ISW2 /DB_XREF=GI:6324879 /SEG=NC_001147:+884510,887872 /DEF=has strong homology to Drosophila ISWI /NOTE=Isw2p; go_component: chromatin accessibility complex [goid GO:0008623] [evidence IPI,ISS] [pmid 14673157]; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 11238381]; go_function: ATPase activity [goid GO:0016887] [evidence ISS,TAS] [pmid 11238381]; go_process: chromatin remodeling [goid GO:0006338] [evidence IGI,IMP,IPI] [pmid 11238381]; go_process: chromatin silencing at telomere [goid GO:0006348] [evidence IMP] [pmid 14673157]; go_process: negative regulation of transcription from Pol II promoter by pheromones [goid GO:0046020] [evidence IMP] [pmid 12624196] --- --- --- --- --- --- S0005831 // ISW2 SGDID:S0005831, Chr XV from 884510-887872, Verified ORF // sgd // 10 // --- /// GENEFINDER00000022876 // cdna:GeneFinder chromosome:SGD1:XV:880961:887872:1 // ensembl // 10 // --- /// GENSCAN00000017759 // cdna:Genscan chromosome:SGD1:XV:884510:887872:1 // ensembl // 10 // --- /// YOR304W // cdna:known chromosome:SGD1:XV:884510:887872:1 gene:YOR304W // ensembl // 10 // --- --- No cerevisiae_gene -1.10670696918231 1.10911983803309 -1.01708338456674 -1.04945216972543 1.1822104674015 Max fold change below threshold 4 1.1822104674015 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773807_at YNR036C.S1 Putative mitochondrial ribosomal protein of the small subunit, has similarity to E. coli and human mitochondrial S12 ribosomal proteins 1.18133268483172 2140.89898681641 2086.458984375 --- 6412 // protein biosynthesis // inferred from sequence similarity 5763 // mitochondrial small ribosomal subunit // inferred from sequence similarity 3735 // structural constituent of ribosome // inferred from sequence similarity 2057.64013671875 1970.90856933594 2310.88940429688 2115.27783203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNR036C /GEN=ARC35 /DB_XREF=GI:6324364 /SEG=NC_001146:-694360,694821 /DEF=Putative mitochondrial ribosomal protein of the small subunit, has similarity to E. coli and human mitochondrial S12 ribosomal proteins /NOTE=Ynr036cp; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence ISS] [pmid 12392552]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence ISS] [pmid 12392552]; go_process: protein biosynthesis [goid GO:0006412] [evidence ISS] [pmid 12392552] --- --- --- --- --- --- S0005319 // YNR036C SGDID:S0005319, Chr XIV from 694822-694361, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YNR036C // cdna:known chromosome:SGD1:XIV:694361:694822:-1 gene:YNR036C // ensembl // 11 // --- GENSCAN00000020066 // ensembl // 7 // Cross Hyb Matching Probes /// GENEFINDER00000020466 // ensembl // 7 // Cross Hyb Matching Probes No cerevisiae_gene -1.18133268483172 -1.04400588070508 1.03728660359033 1.12307753093404 1.02801155278999 Max fold change below threshold 4 1.18133268483172 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770453_at YKR037C.S1 Component of Dam1p complex, important for spindle and kinetochore integrity; localized to nuclear side of spindle pole body and along mitotic spindle 1.18040946159447 312.544860839844 329.443603515625 SPC34 7020 // microtubule nucleation // inferred from physical interaction /// 30472 // mitotic spindle organization and biogenesis in nucleus // inferred from physical interaction /// 31110 // regulation of microtubule polymerization or depolymerization // inferred from physical interaction /// 31110 // regulation of microtubule polymerization or depolymerization // inferred from direct assay 778 // condensed nuclear chromosome kinetochore // inferred from direct assay /// 5816 // spindle pole body // inferred from direct assay /// 5819 // spindle // inferred from direct assay /// 5876 // spindle microtubule // inferred from direct assay /// 42729 // DASH complex // inferred from direct assay /// 42729 // DASH complex // inferred from physical interaction 5200 // structural constituent of cytoskeleton // inferred from physical interaction 306.662231445313 263.102722167969 361.986999511719 352.224975585938 0.000244141003349796 0.00585938012227416 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKR037C /GEN=SPC34 /DB_XREF=GI:6322890 /SEG=NC_001143:-510552,511439 /DEF=Spindle Pole Component of molecular weight 34 kDa /NOTE=Spc34p; go_component: DASH complex [goid GO:0042729] [evidence IDA,IPI] [pmid 11799062]; go_component: condensed nuclear chromosome kinetochore [goid GO:0000778] [evidence IDA] [pmid 11756468]; go_component: spindle [goid GO:0005819] [evidence IDA] [pmid 11756468]; go_component: spindle pole body [goid GO:0005816] [evidence IDA] [pmid 9585415]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence IPI] [pmid 9585415]; go_process: microtubule nucleation [goid GO:0007020] [evidence IPI] [pmid 9153752]; go_process: mitotic spindle assembly (sensu Fungi) [goid GO:0030472] [evidence IPI] [pmid 11756468] --- --- --- --- --- --- S0001745 // SPC34 SGDID:S0001745, Chr XI from 511439-510552, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018448 // cdna:Genscan chromosome:SGD1:XI:510552:511439:-1 // ensembl // 11 // --- /// GENEFINDER00000023122 // cdna:GeneFinder chromosome:SGD1:XI:510552:511439:-1 // ensembl // 11 // --- /// YKR037C // cdna:known chromosome:SGD1:XI:510552:511439:-1 gene:YKR037C // ensembl // 11 // --- --- No cerevisiae_gene -1.09030645022513 -1.16556084603919 1.13033327269536 1.18040946159447 1.14857631448739 Max fold change below threshold 4 1.18040946159447 Max fold change below threshold PPPPPP No 1 0 PPPP 0 4 0 No No 3 < x
1778023_at YDR176W.S1 Transcriptional regulator involved in glucose repression of Gal4p-regulated genes; component of transcriptional adaptor and histone acetyltransferase complexes, the ADA complex, the SAGA complex, and the SLIK complex 1.1801630291301 1011.01983642578 969.665191650391 NGG1 16568 // chromatin modification // traceable author statement /// 16573 // histone acetylation // traceable author statement 124 // SAGA complex // inferred from direct assay /// 5671 // Ada2/Gcn5/Ada3 transcription activator complex // inferred from physical interaction /// 46695 // SLIK (SAGA-like) complex // inferred from physical interaction 3712 // transcription cofactor activity // traceable author statement 939.780944824219 1109.0947265625 912.944946289063 999.549438476563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR176W /GEN=NGG1 /DB_XREF=GI:6320381 /SEG=NC_001136:+814446,816554 /DEF=Involved in glucose repression of GAL4p-regulated transcription /NOTE=Ngg1p; go_component: Ada2/Gcn5/Ada3 transcription activator complex [goid GO:0005671] [evidence IPI] [pmid 10490601]; go_component: SAGA complex [goid GO:0000124] [evidence IDA] [pmid 9674426]; go_function: transcription cofactor activity [goid GO:0003712] [evidence TAS] [pmid 9038164]; go_process: chromatin modification [goid GO:0016568] [evidence TAS] [pmid 10839822]; go_process: histone acetylation [goid GO:0016573] [evidence TAS] [pmid 10839822] --- --- --- --- --- --- S0002583 // NGG1 SGDID:S0002583, Chr IV from 814447-816555, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023820 // cdna:GeneFinder chromosome:SGD1:IV:814447:816555:1 // ensembl // 11 // --- /// GENSCAN00000025232 // cdna:Genscan chromosome:SGD1:IV:814447:816555:1 // ensembl // 11 // --- /// YDR176W // cdna:known chromosome:SGD1:IV:814447:816555:1 gene:YDR176W // ensembl // 11 // --- --- No cerevisiae_gene 1.11984779739346 1.1801630291301 -1.10626911199633 -1.02939498010722 1.06359832467504 Max fold change below threshold 4 1.1801630291301 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776801_at YOR048C.S1 Nuclear 5' to 3' single-stranded RNA exonuclease, involved in RNA metabolism, including rRNA and snRNA processing as well as mRNA transcription termination 1.17977756478479 945.639038085938 1029.36807250977 RAT1 6365 // 35S primary transcript processing // inferred from mutant phenotype /// 6396 // RNA processing // inferred from mutant phenotype /// 30846 // transcription termination from Pol II promoter, RNA polymerase(A) coupled // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay 4534 // 5'-3' exoribonuclease activity // inferred from direct assay 972.582824707031 850.553466796875 1040.724609375 1086.1533203125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR048C /GEN=RAT1 /DB_XREF=GI:6324622 /SEG=NC_001147:-418630,421650 /DEF=RNA trafficking protein; transcription activator /NOTE=Rat1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 9315672]; go_function: 5'-3' exoribonuclease activity [goid GO:0004534] [evidence IDA] [pmid 8417335]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence IMP] [pmid 11142370]; go_process: RNA processing [goid GO:0006396] [evidence IMP] [pmid 9488433] --- --- --- --- scop // a.4.5.Arginine repressor (ArgR), N-terminal DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Arginine repressor (ArgR), N-terminal DNA-binding domain // 3.59999990463257 --- S0005574 // RAT1 SGDID:S0005574, Chr XV from 421650-418630, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017499 // cdna:Genscan chromosome:SGD1:XV:418630:421650:-1 // ensembl // 11 // --- /// GENEFINDER00000022847 // cdna:GeneFinder chromosome:SGD1:XV:418630:421650:-1 // ensembl // 11 // --- /// YOR048C // cdna:known chromosome:SGD1:XV:418630:421650:-1 gene:YOR048C // ensembl // 11 // --- --- No cerevisiae_gene 1.04845734777795 -1.14347053145255 1.17977756478479 1.07006270616438 1.11677205552101 Max fold change below threshold 4 1.17977756478479 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771147_at YJR134C.S1 Protein of unknown function, required for wild-type growth rate on galactose and mannose; localizes to COPI coated vesicles and the Golgi apparatus 1.17910928585714 263.286056518555 324.366775512695 SGM1 --- 5794 // Golgi apparatus // inferred from direct assay /// 30137 // COPI-coated vesicle // inferred from direct assay --- 303.704986572266 257.571533203125 269.000579833984 345.028564453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR134C /GEN=SGM1 /DB_XREF=GI:6322594 /SEG=NC_001142:-673644,675767 /DEF=Protein of unknown function, required for wild-type growth rate on galactose and mannose; localizes to COPI coated vesicles and the Golgi apparatus /NOTE=Sgm1p; go_component: COPI-coated vesicle [goid GO:0030137] [evidence IDA] [pmid 14562095]; go_component: Golgi apparatus [goid GO:0005794] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.Arginine repressor (ArgR), N-terminal DNA-binding domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Arginine repressor (ArgR), N-terminal DNA-binding domain // 9.19999980926514 --- S0003895 // SGM1 SGDID:S0003895, Chr X from 675767-673644, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000024239 // cdna:Genscan chromosome:SGD1:X:673644:675767:-1 // ensembl // 11 // --- /// GENEFINDER00000024463 // cdna:GeneFinder chromosome:SGD1:X:673644:675767:-1 // ensembl // 11 // --- /// YJR134C // cdna:known chromosome:SGD1:X:673644:675767:-1 gene:YJR134C // ensembl // 11 // --- --- No cerevisiae_gene -1.11826062567863 -1.17910928585714 1.14289417849325 -1.12901238636623 1.13606486461501 Max fold change below threshold 4 1.17910928585714 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1780114_at YHR206W.S1 Nuclear response regulator and transcription factor, part of a branched two-component signaling system; required for optimal induction of heat-shock genes in response to oxidative stress; involved in osmoregulation 1.17860579361769 635.281463623047 616.667938232422 SKN7 6350 // transcription // inferred from direct assay /// 6350 // transcription // inferred from mutant phenotype /// 6970 // response to osmotic stress // traceable author statement /// 6979 // response to oxidative stress // traceable author statement 5634 // nucleus // inferred from direct assay /// 5634 // nucleus // inferred from physical interaction 156 // two-component response regulator activity // inferred from direct assay /// 156 // two-component response regulator activity // inferred from mutant phenotype /// 3700 // transcription factor activity // inferred from direct assay /// 3700 // transcription factor activity // inferred from physical interaction /// 3700 // transcription factor activity // inferred from mutant phenotype 590.801147460938 574.241271972656 696.321655273438 642.534729003906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR206W /GEN=SKN7 /DB_XREF=GI:6322000 /SEG=NC_001140:+512730,514598 /DEF=Protein with similarity to DNA-binding region of heat shock transcription factors /NOTE=Skn7p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10888672]; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 9118942]; go_function: transcription factor activity [goid GO:0003700] [evidence IDA,IMP,IPI] [pmid 9118942]; go_function: two-component response regulator activity [goid GO:0000156] [evidence IDA,IMP] [pmid 11073911]; go_process: response to osmotic stress [goid GO:0006970] [evidence TAS] [pmid 11854400]; go_process: response to oxidative stress [goid GO:0006979] [evidence TAS] [pmid 10512701]; go_process: transcription [goid GO:0006350] [evidence IDA,IMP] [pmid 9118942] --- --- --- --- scop // a.4.5.Plant O-methyltransferase, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Plant O-methyltransferase, N-terminal domain // 2.70000004768372 --- S0001249 // SKN7 SGDID:S0001249, Chr VIII from 512731-514599, Verified ORF // sgd // 11 // --- /// GENSCAN00000016728 // cdna:Genscan chromosome:SGD1:VIII:512731:514599:1 // ensembl // 11 // --- /// GENEFINDER00000020186 // cdna:GeneFinder chromosome:SGD1:VIII:512731:514599:1 // ensembl // 11 // --- /// YHR206W // cdna:known chromosome:SGD1:VIII:512731:514599:1 gene:YHR206W // ensembl // 11 // --- --- No cerevisiae_gene 1.12117572822094 -1.02883783576091 1.11356039855012 1.17860579361769 1.08756513382769 Max fold change below threshold 4 1.17860579361769 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775634_at YLR314C.S1 Component of the septin ring of the mother-bud neck that is required for cytokinesis; septins recruit proteins to the neck and can act as a barrier to diffusion at the membrane, and they comprise the 10nm filaments seen with EM 1.17766346791381 643.916229248047 672.457244873047 CDC3 902 // cellular morphogenesis // traceable author statement /// 910 // cytokinesis // traceable author statement /// 7047 // cell wall organization and biogenesis // traceable author statement /// 7120 // axial bud site selection // traceable author statement /// 30468 // establishment of cell polarity (sensu Fungi) // traceable author statement 144 // septin ring (sensu Saccharomyces) // traceable author statement /// 1400 // mating projection base // inferred from direct assay /// 5619 // spore wall (sensu Fungi) // traceable author statement /// 5628 // prospore membrane // traceable author statement 5200 // structural constituent of cytoskeleton // traceable author statement /// 5545 // phosphatidylinositol binding // inferred from direct assay 653.596252441406 652.326049804688 635.506408691406 691.318237304688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR314C /GEN=CDC3 /DB_XREF=GI:6323346 /SEG=NC_001144:-762575,764137 /DEF=Component of the septin ring of the mother-bud neck that is required for cytokinesis; septins recruit proteins to the neck and can act as a barrier to diffusion at the membrane, and they comprise the 10nm filaments seen with EM /NOTE=Cdc3p; go_component: prospore membrane [goid GO:0005628] [evidence TAS] [pmid 8791410]; go_component: septin ring (sensu Saccharomyces) [goid GO:0000144] [evidence TAS] [pmid 8791410]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 9813093]; go_component: spore wall (sensu Fungi) [goid GO:0005619] [evidence TAS] [pmid 8791410]; go_function: phosphatidylinositol binding [goid GO:0005545] [evidence IDA] [pmid 12665577]; go_function: structural constituent of cytoskeleton [goid GO:0005200] [evidence TAS] [pmid 8791410]; go_process: axial budding [goid GO:0007120] [evidence TAS] [pmid 9891811]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence TAS] [pmid 8791410]; go_process: cellular morphogenesis [goid GO:0000902] [evidence TAS] [pmid 8791410]; go_process: cytokinesis [goid GO:0000910] [evidence TAS] [pmid 8791410]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence TAS] [pmid 8791410] --- --- --- --- scop // a.2.7.Seryl-tRNA synthetase (SerRS) // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) // 0.0670000016689301 /// scop // a.4.5.DNA-binding protein Mj223 // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; DNA-binding protein Mj223 // 2.20000004768372 --- S0004306 // CDC3 SGDID:S0004306, Chr XII from 764137-762575, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018064 // cdna:Genscan chromosome:SGD1:XII:762575:764137:-1 // ensembl // 11 // --- /// GENEFINDER00000024870 // cdna:GeneFinder chromosome:SGD1:XII:762575:764137:-1 // ensembl // 11 // --- /// YLR314C // cdna:known chromosome:SGD1:XII:762575:764137:-1 gene:YLR314C // ensembl // 11 // --- --- No cerevisiae_gene -1.17766346791381 -1.0019471898096 -1.0101719784116 -1.02846524205358 1.05771450604617 Max fold change below threshold 4 1.17766346791381 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779861_at YNL076W.S1 Pleiotropic regulatory factor involved in Ras-CAMP and lysine biosynthetic pathways and nitrogen regulation; involved in retrograde (RTG) mitochondria-to-nucleus signaling 1.17589851813569 643.336608886719 762.986145019531 MKS1 6808 // regulation of nitrogen utilization // inferred from mutant phenotype 5622 // intracellular // inferred from curator 16564 // transcriptional repressor activity // inferred from direct assay 716.295166015625 609.147094726563 677.526123046875 809.677124023438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL076W /GEN=MKS1 /DB_XREF=GI:6324253 /SEG=NC_001146:+483555,485309 /DEF=Pleiotropic regulatory factor involved in Ras-CAMP and lysine biosynthetic pathways and nitrogen regulation /NOTE=Mks1p; go_component: intracellular [goid GO:0005622] [evidence IC] [pmid 11882290]; go_function: transcriptional repressor activity [goid GO:0016564] [evidence IDA] [pmid 11882290]; go_process: regulation of nitrogen utilization [goid GO:0006808] [evidence IMP] [pmid 10511541] --- --- --- --- --- --- S0005020 // MKS1 SGDID:S0005020, Chr XIV from 483555-485309, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020476 // cdna:GeneFinder chromosome:SGD1:XIV:483555:485309:1 // ensembl // 11 // --- /// GENSCAN00000019971 // cdna:Genscan chromosome:SGD1:XIV:483933:485309:1 // ensembl // 11 // --- /// YNL076W // cdna:known chromosome:SGD1:XIV:483555:485309:1 gene:YNL076W // ensembl // 11 // --- --- No cerevisiae_gene -1.10670553913865 -1.17589851813569 1.15805374674713 -1.05722147331295 1.1303679857666 Max fold change below threshold 4 1.17589851813569 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775007_at YGR135W.S1 20S proteasome beta-type subunit; the only nonessential 20S subunit 1.17408640867919 2050.88604736328 1936.18072509766 PRE9 6511 // ubiquitin-dependent protein catabolism // traceable author statement /// 30447 // filamentous growth // inferred from mutant phenotype 19773 // proteasome core complex, alpha-subunit complex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement 1920.63146972656 1941.30212402344 2160.46997070313 1951.72998046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR135W /GEN=PRE9 /DB_XREF=GI:6321574 /SEG=NC_001139:+761395,762171 /DEF=20S proteasome beta-type subunit; the only nonessential 20S subunit /NOTE=Pre9p; go_component: proteasome core complex (sensu Eukarya) [goid GO:0005839] [evidence TAS] [pmid 10872471]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 10872471]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10872471] --- --- --- --- --- --- S0003367 // PRE9 SGDID:S0003367, Chr VII from 761397-762173, Verified ORF // sgd // 11 // --- /// GENSCAN00000019445 // cdna:Genscan chromosome:SGD1:VII:761397:762173:1 // ensembl // 11 // --- /// GENEFINDER00000021687 // cdna:GeneFinder chromosome:SGD1:VII:761397:762173:1 // ensembl // 11 // --- /// YGR135W // cdna:known chromosome:SGD1:VII:761397:762173:1 gene:YGR135W // ensembl // 11 // --- --- No cerevisiae_gene -1.15153238183552 1.0107624261201 1.17408640867919 1.12487481578687 1.01619181567748 Max fold change below threshold 4 1.17408640867919 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773955_at YDR105C.S1 Vacuolar membrane protein of unknown function that is conserved in mammals; predicted to contain eleven transmembrane helices; interacts with Pdr5p, a protein involved in multidrug resistance 1.17341374739437 771.250732421875 828.047912597656 TMS1 --- 5774 // vacuolar membrane // inferred from direct assay /// 16020 // membrane // inferred from sequence similarity --- 791.369812011719 674.416687011719 868.084777832031 864.726013183594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR105C /GEN=TMS1 /DB_XREF=GI:6320310 /SEG=NC_001136:-665343,666764 /DEF=Putative membrane protein, conserved in mammals /NOTE=Tms1p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 10637174]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0002512 // span:7-29,39-61,82-104,119-138,145-167,195-217,229-246,296-318,399-421,436-458 // numtm:10 S0002512 // TMS1 SGDID:S0002512, Chr IV from 666765-665344, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023681 // cdna:GeneFinder chromosome:SGD1:IV:665344:666735:-1 // ensembl // 11 // --- /// GENSCAN00000025174 // cdna:Genscan chromosome:SGD1:IV:665344:666096:-1 // ensembl // 11 // --- /// YDR105C // cdna:known chromosome:SGD1:IV:665344:666765:-1 gene:YDR105C // ensembl // 11 // --- --- No cerevisiae_gene -1.14641546529649 -1.17341374739437 1.01963195029263 1.09693946452834 1.09269522296459 Max fold change below threshold 4 1.17341374739437 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771813_at YNL045W.S1 Leucyl aminopeptidase with epoxide hydrolase activity, metalloenzyme containing one zinc atom; role in vivo is not defined 1.17208974383409 2330.81323242188 2293.05590820313 --- 6629 // lipid metabolism // inferred from direct assay /// 6629 // lipid metabolism // inferred from mutant phenotype /// 30163 // protein catabolism // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4177 // aminopeptidase activity // inferred from direct assay /// 4301 // epoxide hydrolase activity // inferred from direct assay /// 4463 // leukotriene-A4 hydrolase activity // inferred from sequence similarity 2318.56762695313 2451.501953125 2210.12451171875 2267.54418945313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL045W /GEN=ALG11 /DB_XREF=GI:6324283 /SEG=NC_001146:+542961,544976 /DEF=Similar to human LTA4 hydrolase but in vivo substrates not yet defined. /NOTE=Ynl045wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: aminopeptidase activity [goid GO:0004177] [evidence IDA] [pmid 10574934]; go_function: epoxide hydrolase activity [goid GO:0004301] [evidence IDA] [pmid 10574934]; go_function: leukotriene-A4 hydrolase activity [goid GO:0004463] [evidence ISS] [pmid 10341423]; go_process: lipid metabolism [goid GO:0006629] [evidence IMP] [pmid 10341423]; go_process: lipid metabolism [goid GO:0006629] [evidence IDA] [pmid 10574934]; go_process: protein catabolism [goid GO:0030163] [evidence IDA] [pmid 10574934] --- --- --- --- --- --- S0004990 // YNL045W SGDID:S0004990, Chr XIV from 542962-544977, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000019999 // cdna:Genscan chromosome:SGD1:XIV:543079:544977:1 // ensembl // 11 // --- /// GENEFINDER00000020639 // cdna:GeneFinder chromosome:SGD1:XIV:543079:544977:1 // ensembl // 11 // --- /// YNL045W // cdna:known chromosome:SGD1:XIV:542962:544977:1 gene:YNL045W // ensembl // 11 // --- --- No cerevisiae_gene -1.15842574128441 1.05733467707671 1.17208974383409 -1.04906651849675 -1.02250162873885 Max fold change below threshold 4 1.17208974383409 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775254_at YER050C.S1 Mitochondrial ribosomal protein of the small subunit, has similarity to E. coli S18 ribosomal protein 1.17148160341271 1390.20166015625 1553.14624023438 RSM18 6412 // protein biosynthesis // inferred from direct assay 5763 // mitochondrial small ribosomal subunit // inferred from direct assay 3735 // structural constituent of ribosome // inferred from direct assay 1519.13830566406 1397.39086914063 1383.01245117188 1587.15417480469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER050C /GEN=RSM18 /DB_XREF=GI:6320891 /SEG=NC_001137:-253970,254578 /DEF=Mitochondrial ribosomal protein of the small subunit, has similarity to E. coli S18 ribosomal protein /NOTE=Rsm18p; go_component: mitochondrial small ribosomal subunit [goid GO:0005763] [evidence IDA] [pmid 11278769]; go_function: structural constituent of ribosome [goid GO:0003735] [evidence IDA] [pmid 11278769]; go_process: protein biosynthesis [goid GO:0006412] [evidence IDA] [pmid 11278769] --- --- --- --- --- --- S0000852 // RSM18 SGDID:S0000852, Chr V from 254578-253970, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000019574 // cdna:GeneFinder chromosome:SGD1:V:253970:254422:-1 // ensembl // 9 // --- /// YER050C // cdna:known chromosome:SGD1:V:253970:254578:-1 gene:YER050C // ensembl // 11 // --- --- No cerevisiae_gene 1.0686159121643 -1.08712482613995 1.17148160341271 -1.0984270636008 1.04477266413929 Max fold change below threshold 4 1.17148160341271 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775165_at YJR136C.S1 Hypothetical protein 1.17039412660116 422.681533813477 406.743286132813 --- 6412 // protein biosynthesis // inferred from physical interaction 5737 // cytoplasm // inferred from direct assay --- 380.397888183594 400.147613525391 445.215454101563 433.088684082031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR136C /GEN=TIM8 /DB_XREF=GI:6322596 /SEG=NC_001142:-677356,678621 /DEF=Hypothetical ORF /NOTE=Yjr136cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: protein biosynthesis [goid GO:0006412] [evidence IPI] [pmid 14690591] --- --- --- --- --- --- S0003897 // YJR136C SGDID:S0003897, Chr X from 678621-677356, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YJR136C // cdna:known chromosome:SGD1:X:677356:678621:-1 gene:YJR136C // ensembl // 11 // --- --- No cerevisiae_gene -1.10313906980704 1.05191859880217 1.16327564537736 1.17039412660116 1.13851495377652 Max fold change below threshold 4 1.17039412660116 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779812_at YLR438C-A.S1 Component of small nuclear ribonucleoprotein complexes involved in RNA processing, splicing, and decay 1.17012977588758 582.235977172852 579.121826171875 LSM3 398 // nuclear mRNA splicing, via spliceosome // inferred from physical interaction /// 398 // nuclear mRNA splicing, via spliceosome // traceable author statement /// 6364 // rRNA processing // inferred from mutant phenotype /// 6402 // mRNA catabolism // traceable author statement 5688 // snRNP U6 // traceable author statement /// 5730 // nucleolus // inferred from direct assay /// 5732 // small nucleolar ribonucleoprotein complex // inferred from physical interaction /// 46540 // U4/U6 x U5 tri-snRNP complex // non-traceable author statement 3723 // RNA binding // traceable author statement 567.737121582031 663.405944824219 501.066009521484 590.506530761719 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR438C-A /GEN=LSM3 /DB_XREF=GI:6323471 /SEG=NC_001144:-1013905,1014174 /DEF=Like Sm-D2 protein; contains Sm-like domain; coprecipitates with U4, U5 and U6 snRNAs. /NOTE=Lsm3p; go_component: snRNP U6 [goid GO:0005688] [evidence TAS] [pmid 9528767]; go_function: U6 snRNA binding [goid GO:0017070] [evidence IPI] [pmid 10377396]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IPI] [pmid 10377396]; go_process: rRNA processing [goid GO:0006364] [evidence IMP] [pmid 12438310] --- --- --- --- --- --- S0006434 // LSM3 SGDID:S0006434, Chr XII from 1014174-1013905, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018153 // cdna:Genscan chromosome:SGD1:XII:1013905:1014174:-1 // ensembl // 11 // --- /// YLR438C-A // cdna:known chromosome:SGD1:XII:1013905:1014174:-1 gene:YLR438C-A // ensembl // 11 // --- --- No cerevisiae_gene 1.1265286683606 1.16850901518576 1.17012977588758 -1.13305854077832 1.04010554940681 Max fold change below threshold 4 1.17012977588758 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771227_at YCL011C.S1 Poly(A+) RNA-binding protein, involved in the export of mRNAs from the nucleus to the cytoplasm; similar to Hrb1p and Npl3p; also binds single-stranded telomeric repeat sequence in vitro 1.16846094330333 3221.32690429688 2864.09777832031 GBP2 723 // telomere maintenance // inferred from genetic interaction /// 723 // telomere maintenance // inferred from mutant phenotype /// 723 // telomere maintenance // inferred from direct assay /// 16973 // poly(A)+ mRNA-nucleus export // inferred from genetic interaction /// 16973 // poly(A)+ mRNA-nucleus export // inferred from physical interaction 5634 // nucleus // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay 3723 // RNA binding // inferred from direct assay /// 42162 // telomeric DNA binding // inferred from physical interaction /// 42162 // telomeric DNA binding // inferred from mutant phenotype 2846.2353515625 3325.71484375 3116.93896484375 2881.96020507813 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL011C /GEN=GBP2 /DB_XREF=GI:6319835 /SEG=NC_001135:-102074,103357 /DEF=Poly(A+) RNA-binding protein, involved in the export of mRNAs from the nucleus to the cytoplasm; similar to Hrb1p and Npl3p; also binds single-stranded telomeric repeat sequence in vitro /NOTE=Gbp2p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12634846]; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 7777547]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 12634846]; go_function: telomeric DNA binding [goid GO:0042162] [evidence IMP,IPI] [pmid 7777547]; go_process: poly(A)+ mRNA-nucleus export [goid GO:0016973] [evidence IGI,IPI] [pmid 12634846]; go_process: telomere maintenance [goid GO:0000723] [evidence IDA,IGI,IMP] [pmid 12519786] --- --- --- --- scop // a.1.1.Globins // All alpha proteins; Globin-like; Globin-like; Globins // 0.0359999984502792 --- S0000517 // GBP2 SGDID:S0000517, Chr III from 103357-102074, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000022456 // cdna:Genscan chromosome:SGD1:III:102074:103357:-1 // ensembl // 11 // --- /// GENEFINDER00000023339 // cdna:GeneFinder chromosome:SGD1:III:102074:103357:-1 // ensembl // 11 // --- /// YCL011C // cdna:known chromosome:SGD1:III:102074:103357:-1 gene:YCL011C // ensembl // 11 // --- --- No cerevisiae_gene 1.02368088329396 1.16846094330333 -1.01982335231702 1.09510935669204 1.01255161611847 Max fold change below threshold 4 1.16846094330333 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774521_at YBL056W.S1 Type 2C protein phosphatase; dephosphorylates Hog1p (see also Ptc2p) to limit maximal kinase activity induced by osmotic stress; dephosphorylates T169 phosphorylated Cdc28p (see also Ptc2p); role in DNA checkpoint inactivation 1.16840751376437 1393.5322265625 1276.68286132813 PTC3 79 // regulation of cyclin dependent protein kinase activity // inferred from mutant phenotype /// 79 // regulation of cyclin dependent protein kinase activity // inferred from physical interaction /// 173 // inactivation of MAPK activity during osmolarity sensing // inferred from genetic interaction /// 6470 // protein amino acid dephosphorylation // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 15071 // protein phosphatase type 2C activity // inferred from direct assay 1289.42395019531 1280.49182128906 1506.57263183594 1263.94177246094 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL056W /GEN=PTC3 /DB_XREF=GI:6319415 /SEG=NC_001134:+113727,115133 /DEF=protein phosphatase type 2C /NOTE=Ptc3p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: protein phosphatase type 2C activity [goid GO:0015071] [evidence IDA] [pmid 10580002]; go_process: inactivation of MAPK during osmolarity sensing [goid GO:0000173] [evidence IGI] [pmid 11113180]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence IDA] [pmid 10580002]; go_process: regulation of cyclin dependent protein kinase activity [goid GO:0000079] [evidence IMP,IPI] [pmid 10580002] --- --- --- --- --- --- S0000152 // PTC3 SGDID:S0000152, Chr II from 113765-115171, Verified ORF // sgd // 11 // --- /// GENSCAN00000021094 // cdna:Genscan chromosome:SGD1:II:113765:115171:1 // ensembl // 11 // --- /// GENEFINDER00000022346 // cdna:GeneFinder chromosome:SGD1:II:114227:115171:1 // ensembl // 11 // --- /// YBL056W // cdna:known chromosome:SGD1:II:113765:115171:1 gene:YBL056W // ensembl // 11 // --- --- No cerevisiae_gene 1.03717565557612 -1.00697554545663 1.11727895236951 1.16840751376437 -1.02016087947213 Max fold change below threshold 4 1.16840751376437 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769361_at YDL159W.S1 Signal transducing MAP kinase kinase involved in pheromone response, where it phosphorylates Fus3p, and in the pseudohyphal/invasive growth pathway, through phosphorylation of Kss1p; phosphorylated by Ste11p, degraded by ubiquitin pathway 1.16737062404721 801.822296142578 800.818054199219 STE7 750 // signal transduction during conjugation with cellular fusion // traceable author statement /// 1403 // invasive growth (sensu Saccharomyces) // inferred from mutant phenotype /// 6468 // protein amino acid phosphorylation // inferred from sequence similarity /// 7124 // pseudohyphal growth // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 43332 // mating projection tip // inferred from direct assay 4708 // MAP kinase kinase activity // traceable author statement 774.676086425781 699.310485839844 904.334106445313 826.960021972656 0.000732421991415322 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL159W /GEN=STE7 /DB_XREF=GI:6320042 /SEG=NC_001136:+172482,174029 /DEF=Serine/threonine/tyrosine protein kinase of the pheromone pathway, homologous to MAP kinase kinase family /NOTE=Ste7p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11781566]; go_component: shmoo tip [goid GO:0005937] [evidence IDA] [pmid 11781566]; go_function: MAP kinase kinase activity [goid GO:0004708] [evidence TAS] [pmid 11781566]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence ISS] [pmid 3532111]; go_process: pseudohyphal growth [goid GO:0007124] [evidence IMP] [pmid 8643578]; go_process: signal transduction during conjugation with cellular fusion [goid GO:0000750] [evidence TAS] [pmid 8607979] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-54 /// hanks // 2.1.16 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; Titen // 1.0E-56 --- --- S0002318 // STE7 SGDID:S0002318, Chr IV from 172482-174029, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023621 // cdna:GeneFinder chromosome:SGD1:IV:172482:174029:1 // ensembl // 11 // --- /// GENSCAN00000024982 // cdna:Genscan chromosome:SGD1:IV:172482:174029:1 // ensembl // 11 // --- /// YDL159W // cdna:known chromosome:SGD1:IV:172482:174029:1 gene:YDL159W // ensembl // 11 // --- YDL158C // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene 1.04004469483962 -1.10777130060538 1.13230532891102 1.16737062404721 1.06749135085362 Max fold change below threshold 4 1.16737062404721 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769758_at YPL235W.S1 Essential protein involved in transcription regulation; component of chromatin remodeling complexes; required for assembly and function of the INO80 complex; member of the RUVB-like protein family 1.16711514600849 1667.00201416016 1778.62390136719 RVB2 6338 // chromatin remodeling // inferred from direct assay /// 6338 // chromatin remodeling // inferred from physical interaction /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 6365 // 35S primary transcript processing // inferred from mutant phenotype /// 16074 // snoRNA metabolism // inferred from mutant phenotype 812 // SWR1 complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay /// 16585 // chromatin remodeling complex // inferred from direct assay /// 31011 // INO80 complex // inferred from physical interaction 16887 // ATPase activity // inferred from mutant phenotype 1754.30029296875 1503.10815429688 1830.89587402344 1802.94750976563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL235W /GEN=RVB2 /DB_XREF=GI:6325021 /SEG=NC_001148:+103232,104647 /DEF=RUVB-like protein, TIP49b Homologue /NOTE=Rvb2p; go_component: SWR1 complex [goid GO:0000812] [evidence IPI] [pmid 14690608]; go_component: chromatin remodeling complex [goid GO:0016585] [evidence IDA] [pmid 11278922]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11604509]; go_function: ATPase activity [goid GO:0016887] [evidence IMP] [pmid 11278922]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence IMP] [pmid 11604509]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 14645854]; go_process: chromatin remodeling [goid GO:0006338] [evidence IPI] [pmid 14690608]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP] [pmid 11278922]; go_process: snoRNA metabolism [goid GO:0016074] [evidence IMP] [pmid 11604509] --- --- --- --- --- --- S0006156 // RVB2 SGDID:S0006156, Chr XVI from 103232-104647, Verified ORF // sgd // 11 // --- /// GENSCAN00000017005 // cdna:Genscan chromosome:SGD1:XVI:103232:104647:1 // ensembl // 11 // --- /// GENEFINDER00000020959 // cdna:GeneFinder chromosome:SGD1:XVI:103232:104647:1 // ensembl // 11 // --- /// YPL235W // cdna:known chromosome:SGD1:XVI:103232:104647:1 gene:YPL235W // ensembl // 11 // --- --- No cerevisiae_gene 1.09241200543196 -1.16711514600849 1.07718310502067 1.04366161332908 1.0277302677266 Max fold change below threshold 4 1.16711514600849 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774040_at YNL268W.S1 Lysine permease; one of three amino acid permeases (Alp1p, Can1p, Lyp1p) responsible for uptake of cationic amino acids 1.16618049053526 1600.96124267578 1772.82934570313 LYP1 15802 // basic amino acid transport // inferred from direct assay 5739 // mitochondrion // inferred from direct assay /// 5886 // plasma membrane // inferred from sequence similarity 15174 // basic amino acid transporter activity // inferred from direct assay 1723.85534667969 1478.20629882813 1723.71618652344 1821.80334472656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL268W /GEN=LYP1 /DB_XREF=GI:6324061 /SEG=NC_001146:+138549,140384 /DEF=lysine permease /NOTE=Lyp1p; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 10654085]; go_function: basic amino acid transporter activity [goid GO:0015174] [evidence IDA] [pmid 10654085]; go_process: basic amino acid transport [goid GO:0015802] [evidence IDA] [pmid 10654085] --- --- --- --- --- S0005212 // span:114-133,140-162,192-214,221-240,250-272,346-368,402-424,444-463,473-495,516-538,548-570 // numtm:11 S0005212 // LYP1 SGDID:S0005212, Chr XIV from 138549-140384, Verified ORF // sgd // 11 // --- /// GENSCAN00000019827 // cdna:Genscan chromosome:SGD1:XIV:138621:140384:1 // ensembl // 11 // --- /// GENEFINDER00000020553 // cdna:GeneFinder chromosome:SGD1:XIV:138621:140384:1 // ensembl // 11 // --- /// YNL268W // cdna:known chromosome:SGD1:XIV:138549:140384:1 gene:YNL268W // ensembl // 11 // --- --- No cerevisiae_gene 1.14880769996905 -1.16618049053526 -1.15956445746697 -1.00008073263878 1.05681915146508 Max fold change below threshold 4 1.16618049053526 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778795_at YGL219C.S1 Mitochondrial outer membrane protein, required for normal mitochondrial morphology and inheritance; localizes to dots on the mitochondrial surface near mtDNA nucleoids; interacts genetically with MDM31 and MDM32 1.16582210213824 1660.44995117188 1534.623046875 MDM34 7005 // mitochondrion organization and biogenesis // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay /// 5741 // mitochondrial outer membrane // inferred from direct assay --- 1509.94763183594 1560.56958007813 1760.33032226563 1559.29846191406 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL219C /GEN=MDM34 /DB_XREF=GI:6321220 /SEG=NC_001139:-82876,84255 /DEF=Mitochondrial outer membrane protein, colocalizes with mtDNA nucleids, required for mitochondria shape /NOTE=Mdm34p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: mitochondrion organization and biogenesis [goid GO:0007005] [evidence IMP] [pmid 11907266] --- --- --- --- --- --- S0003187 // MDM34 SGDID:S0003187, Chr VII from 84256-82877, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019185 // cdna:Genscan chromosome:SGD1:VII:82877:84256:-1 // ensembl // 11 // --- /// GENEFINDER00000021752 // cdna:GeneFinder chromosome:SGD1:VII:82877:83941:-1 // ensembl // 11 // --- /// YGL219C // cdna:known chromosome:SGD1:VII:82877:84256:-1 gene:YGL219C // ensembl // 11 // --- --- No cerevisiae_gene 1.07847428806893 1.03352563173376 -1.08573670354491 1.16582210213824 1.0326838024297 Max fold change below threshold 4 1.16582210213824 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777979_at YDR152W.S1 Highly-acidic cytoplasmic RWD domain-containing protein of unknown function, sensitive to proteolysis, N-terminal region has high content of acidic amino acid residues, putative IUP (intrinsically unstructured protein) 1.16575160581579 1490.11224365234 1626.65856933594 GIR2 --- 5737 // cytoplasm // inferred from direct assay --- 1502.16540527344 1434.02880859375 1546.19567871094 1751.15173339844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR152W /GEN=GIR2 /DB_XREF=GI:6320356 /SEG=NC_001136:+765700,766497 /DEF=Genetically Interacts with ribosomal genes /NOTE=Gir2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002559 // GIR2 SGDID:S0002559, Chr IV from 765701-766498, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023744 // cdna:GeneFinder chromosome:SGD1:IV:765701:766498:1 // ensembl // 11 // --- /// GENSCAN00000025210 // cdna:Genscan chromosome:SGD1:IV:765701:766498:1 // ensembl // 11 // --- /// YDR152W // cdna:known chromosome:SGD1:IV:765701:766498:1 gene:YDR152W // ensembl // 11 // --- --- No cerevisiae_gene 1.1592113240822 -1.04751410590315 -1.05583291849013 1.02931120187093 1.16575160581579 Max fold change below threshold 4 1.16575160581579 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775098_at YOR207C.S1 Second-largest subunit of RNA polymerase III, which is responsible for the transcription of tRNA and 5S RNA genes, and other low molecular weight RNAs 1.16483471657291 1741.10931396484 1616.51452636719 RET1 6383 // transcription from RNA polymerase III promoter // traceable author statement 5666 // DNA-directed RNA polymerase III complex // traceable author statement 3899 // DNA-directed RNA polymerase activity // traceable author statement 1582.54711914063 1788.55895996094 1693.65966796875 1650.48193359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR207C /GEN=RET1 /DB_XREF=GI:6324781 /SEG=NC_001147:-730008,733457 /DEF=second-largest subunit of RNA polymerase III /NOTE=Ret1p; go_component: DNA-directed RNA polymerase III complex [goid GO:0005666] [evidence TAS] [pmid 8246845]; go_function: DNA-directed RNA polymerase activity [goid GO:0003899] [evidence TAS] [pmid 8246845]; go_process: transcription from Pol III promoter [goid GO:0006383] [evidence TAS] --- --- --- --- --- --- S0005733 // RET1 SGDID:S0005733, Chr XV from 733457-730008, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017623 // cdna:Genscan chromosome:SGD1:XV:730008:733457:-1 // ensembl // 10 // --- /// GENEFINDER00000022843 // cdna:GeneFinder chromosome:SGD1:XV:730008:733457:-1 // ensembl // 10 // --- /// YOR207C // cdna:known chromosome:SGD1:XV:730008:733457:-1 gene:YOR207C // ensembl // 10 // --- --- No cerevisiae_gene 1.15609902203186 1.13017738197406 -1.16483471657291 1.07021121044943 1.04292751453114 Max fold change below threshold 4 1.16483471657291 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770120_at YJL016W.S1 Hypothetical protein 1.16481555286176 1621.36822509766 1763.50848388672 --- --- 5737 // cytoplasm // inferred from direct assay --- 1784.56823730469 1671.91979980469 1570.81665039063 1742.44873046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL016W /GEN=MPS3 /DB_XREF=GI:37362668 /SEG=NC_001142:+405504,407189 /DEF=Hypothetical ORF /NOTE=Yjl016wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003553 // YJL016W SGDID:S0003553, Chr X from 405504-407189, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024123 // cdna:Genscan chromosome:SGD1:X:405504:407189:1 // ensembl // 11 // --- /// YJL016W // cdna:known chromosome:SGD1:X:405504:407189:1 gene:YJL016W // ensembl // 11 // --- YJL015C // ensembl // 1 // Negative Strand Matching Probes No cerevisiae_gene -1.12947356791436 -1.0673766992371 -1.16481555286176 -1.13607672598894 -1.02417259463617 Max fold change below threshold 4 1.16481555286176 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772572_at YOR332W.S1 Subunit E of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; required for the V1 domain to assemble onto the vacuolar membrane 1.16386461292469 4778.4423828125 4308.37145996094 VMA4 7035 // vacuolar acidification // traceable author statement 221 // hydrogen-transporting ATPase V1 domain // traceable author statement /// 329 // vacuolar membrane (sensu Fungi) // traceable author statement 46961 // hydrogen-transporting ATPase activity, rotational mechanism // traceable author statement 4634.634765625 4929.38916015625 4627.49560546875 3982.10815429688 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR332W /GEN=VMA4 /DB_XREF=GI:6324907 /SEG=NC_001147:+943651,944352 /DEF=vacuolar ATPase V1 domain subunit E (27 kDa) /NOTE=Vma4p; go_component: hydrogen-transporting ATPase V1 domain [goid GO:0000221] [evidence TAS] [pmid 9442887]; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence TAS] [pmid 11717306]; go_function: hydrogen-transporting ATPase activity, rotational mechanism [goid GO:0046961] [evidence TAS] [pmid 9442887]; go_process: vacuolar acidification [goid GO:0007035] [evidence TAS] [pmid 9442887] --- --- --- --- --- --- S0005859 // VMA4 SGDID:S0005859, Chr XV from 943651-944352, Verified ORF // sgd // 11 // --- /// GENSCAN00000017784 // cdna:Genscan chromosome:SGD1:XV:943651:944352:1 // ensembl // 11 // --- /// GENEFINDER00000022579 // cdna:GeneFinder chromosome:SGD1:XV:943651:944352:1 // ensembl // 11 // --- /// YOR332W // cdna:known chromosome:SGD1:XV:943651:944352:1 gene:YOR332W // ensembl // 11 // --- YOR331C // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene -1.08805005996939 1.06359819261648 -1.02012887605106 -1.00154276973225 -1.16386461292469 Max fold change below threshold 4 1.16386461292469 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771286_at YDR541C.S1 Hypothetical protein 1.16367049648547 84.4515419006348 76.3142509460449 --- --- --- 45552 // dihydrokaempferol 4-reductase activity // inferred from sequence similarity 74.6314926147461 86.8464660644531 82.0566177368164 77.9970092773438 0.000244141003349796 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR541C /GEN=PAD1 /DB_XREF=GI:6320750 /SEG=NC_001136:-1519644,1520678 /DEF=Hypothetical ORF /NOTE=Ydr541cp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: dihydrokaempferol 4-reductase activity [goid GO:0045552] [evidence ISS] [pmid 10903444]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0002949 // YDR541C SGDID:S0002949, Chr IV from 1520680-1519646, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000025520 // cdna:Genscan chromosome:SGD1:IV:1519646:1520680:-1 // ensembl // 11 // --- /// YDR541C // cdna:known chromosome:SGD1:IV:1519646:1520680:-1 gene:YDR541C // ensembl // 11 // --- --- No cerevisiae_gene -1.01717322912838 1.16367049648547 1.02845094902434 1.09949050812101 1.04509512733412 Max fold change below threshold 4 1.16367049648547 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771077_at SPAC2G11.08c.S1 --- 1.16136543471634 --- --- --- --- 5.44631385803223 4.75688600540161 4.68957805633545 5.39054250717163 0.219482004642487 0.326171875 0.171387001872063 0.171387001872063 A A A A B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. pombe SPAC2G11.08c /GEN=smn1 /DEF=SMN family (PMID 10749973) --- --- --- --- --- --- SPAC2G11.08c // |smn1|yab8|SMN family |Schizosaccharomyces pombe|chr 1|||Manual // sanger // 11 // --- --- No No -1.0398636548618 -1.14493259915158 -1.07362229844839 -1.16136543471634 -1.01034614805215 Max fold change below threshold 4 1.16136543471634 Max fold change below threshold AAAAAA No 4 0 AAAA 4 0 0 No No x = 1
1772640_at YJR112W-A.S1 Identified based on homology to Ashbya gossypii 1.16031661013151 699.734405517578 627.307586669922 --- --- --- --- 614.434326171875 686.530456542969 712.938354492188 640.180847167969 0.000732421991415322 0.000244141003349796 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJR112W-A /GEN=NNF1 /DB_XREF=GI:33438825 /SEG=NC_001142:+637705,638083 /DEF=Identified based on homology to Ashbya gossypii /NOTE=Yjr112w-ap; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0028513 // span:90-107 // numtm:1 S0028513 // YJR112W-A SGDID:S0028513, Chr X from 637705-637724,637774-638083, intron sequence removed, Uncharacterized ORF // sgd // 11 // --- /// YJR112W-A // cdna:known chromosome:SGD1:X:637705:638083:1 gene:YJR112W-A // ensembl // 11 // --- --- No cerevisiae_gene -1.04687659400293 1.11733740661964 1.09637324012217 1.16031661013151 1.04190280376505 Max fold change below threshold 4 1.16031661013151 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776268_at YBR221C.S1 E1 beta subunit of the pyruvate dehydrogenase (PDH) complex, which is an evolutionarily-conserved multi-protein complex found in mitochondria 1.16007259059401 3367.25891113281 2972.29431152344 PDB1 6090 // pyruvate metabolism // non-traceable author statement 5739 // mitochondrion // inferred from mutant phenotype /// 5739 // mitochondrion // inferred from direct assay /// 5967 // pyruvate dehydrogenase complex (sensu Eukaryota) // traceable author statement /// 42645 // mitochondrial nucleoid // inferred from direct assay 4739 // pyruvate dehydrogenase (acetyl-transferring) activity // inferred from mutant phenotype 3048.56909179688 3287.66870117188 3446.84912109375 2896.01953125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR221C /GEN=PDB1 /DB_XREF=GI:6319698 /SEG=NC_001134:-665110,666210 /DEF=beta subunit of pyruvate dehydrogenase (E1 beta) /NOTE=Pdb1p; go_component: mitochondrion [goid GO:0005739] [evidence IMP] [pmid 8433986]; go_component: pyruvate dehydrogenase complex (sensu Eukarya) [goid GO:0005967] [evidence TAS] [pmid 9123965]; go_function: pyruvate dehydrogenase (acetyl-transferring) activity [goid GO:0004739] [evidence IMP] [pmid 8433986]; go_process: pyruvate metabolism [goid GO:0006090] [evidence NAS] [pmid 11752249] --- --- --- --- --- --- S0000425 // PDB1 SGDID:S0000425, Chr II from 666248-665148, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021316 // cdna:Genscan chromosome:SGD1:II:665148:666248:-1 // ensembl // 11 // --- /// GENEFINDER00000022186 // cdna:GeneFinder chromosome:SGD1:II:665148:666248:-1 // ensembl // 11 // --- /// YBR221C // cdna:known chromosome:SGD1:II:665148:666248:-1 gene:YBR221C // ensembl // 11 // --- --- No cerevisiae_gene -1.16007259059401 1.07843011005339 1.01803636583794 1.13064490825173 -1.05267559797189 Max fold change below threshold 4 1.16007259059401 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772896_at YJL055W.S1 Hypothetical protein 1.15984968681498 3052.0732421875 3285.6787109375 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 3479.533203125 3104.16015625 2999.986328125 3091.82421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YJL055W /GEN=ZAP1 /DB_XREF=GI:6322406 /SEG=NC_001142:+333273,334010 /DEF=Hypothetical ORF /NOTE=Yjl055wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003591 // YJL055W SGDID:S0003591, Chr X from 333273-334010, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000024098 // cdna:Genscan chromosome:SGD1:X:333273:334010:1 // ensembl // 11 // --- /// GENEFINDER00000024532 // cdna:GeneFinder chromosome:SGD1:X:333273:334010:1 // ensembl // 11 // --- /// YJL055W // cdna:known chromosome:SGD1:X:333273:334010:1 gene:YJL055W // ensembl // 11 // --- --- No cerevisiae_gene -1.07893172180847 -1.12092579892156 -1.0153851984915 -1.15984968681498 -1.1253981329287 Max fold change below threshold 4 1.15984968681498 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777027_at YLR375W.S1 Zinc-finger protein of unknown function, possibly involved in pre-tRNA splicing and in uptake of branched-chain amino acids 1.15911991359092 1722.97979736328 1609.46026611328 STP3 --- 5634 // nucleus // inferred from direct assay --- 1628.56323242188 1558.25952148438 1887.70007324219 1590.35729980469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR375W /GEN=VID22 /DB_XREF=GI:6323406 /SEG=NC_001144:+871696,872727 /DEF=Involved in pre-tRNA splicing and in uptake of branched-chain amino acids /NOTE=Ylr375wp --- --- --- --- scop // a.4.1.Myb // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb // 5.30000019073486 --- S0004367 // STP3 SGDID:S0004367, Chr XII from 871696-872727, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018102 // cdna:Genscan chromosome:SGD1:XII:871696:872727:1 // ensembl // 11 // --- /// GENEFINDER00000024708 // cdna:GeneFinder chromosome:SGD1:XII:871696:872727:1 // ensembl // 11 // --- /// YLR375W // cdna:known chromosome:SGD1:XII:871696:872727:1 gene:YLR375W // ensembl // 11 // --- --- No cerevisiae_gene 1.14149607343873 -1.04511681781385 1.00243291640401 1.15911991359092 -1.02402348995529 Max fold change below threshold 4 1.15911991359092 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775654_at YHR009C.S1 Hypothetical protein 1.15899735692781 2426.02758789063 2291.32409667969 --- --- 5737 // cytoplasm // inferred from direct assay --- 2239.89184570313 2496.06494140625 2355.990234375 2342.75634765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YHR009C /GEN=SOD2 /DB_XREF=GI:6321797 /SEG=NC_001140:-124103,125674 /DEF=Hypothetical ORF /NOTE=Yhr009cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 10684247]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001051 // YHR009C SGDID:S0001051, Chr VIII from 125674-124103, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016561 // cdna:Genscan chromosome:SGD1:VIII:124103:125674:-1 // ensembl // 11 // --- /// GENEFINDER00000020264 // cdna:GeneFinder chromosome:SGD1:VIII:124103:125674:-1 // ensembl // 11 // --- /// YHR009C // cdna:known chromosome:SGD1:VIII:124103:125674:-1 gene:YHR009C // ensembl // 11 // --- --- No cerevisiae_gene 1.00657391272881 1.11436851122725 -1.15899735692781 1.0518321404199 1.04592387000759 Max fold change below threshold 4 1.15899735692781 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771949_at YMR196W.S1 Hypothetical protein 1.15876738749094 3708.62548828125 3308.87109375 --- --- 5737 // cytoplasm // inferred from direct assay --- 3384.82177734375 3638.65014648438 3778.60083007813 3232.92041015625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR196W /GEN=ICY1 /DB_XREF=GI:6323852 /SEG=NC_001145:+655075,658341 /DEF=Hypothetical ORF /NOTE=Ymr196wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004809 // YMR196W SGDID:S0004809, Chr XIII from 655075-658341, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018878 // cdna:Genscan chromosome:SGD1:XIII:655075:658341:1 // ensembl // 11 // --- /// GENEFINDER00000021958 // cdna:GeneFinder chromosome:SGD1:XIII:655075:658341:1 // ensembl // 11 // --- /// YMR196W // cdna:known chromosome:SGD1:XIII:655075:658341:1 gene:YMR196W // ensembl // 11 // --- --- No cerevisiae_gene -1.15876738749094 1.07499017255196 -1.09423673400062 1.11633671686058 -1.0469858047573 Max fold change below threshold 4 1.15876738749094 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778117_at YKL007W.S1 Alpha subunit of the capping protein (CP) heterodimer (Cap1p and Cap2p) which binds to the barbed ends of actin filaments preventing further polymerization; localized predominantly to cortical actin patches 1.15825815495499 1236.82928466797 1348.19177246094 CAP1 51016 // barbed-end actin filament capping // inferred from direct assay 5884 // actin filament // inferred from physical interaction /// 8290 // F-actin capping protein complex // inferred from genetic interaction /// 8290 // F-actin capping protein complex // inferred from mutant phenotype /// 8290 // F-actin capping protein complex // inferred from physical interaction /// 8290 // F-actin capping protein complex // inferred from sequence similarity /// 8290 // F-actin capping protein complex // inferred from direct assay /// 30479 // actin cortical patch // inferred from direct assay 51015 // actin filament binding // inferred from genetic interaction /// 51015 // actin filament binding // inferred from mutant phenotype /// 51015 // actin filament binding // inferred from sequence similarity /// 51015 // actin filament binding // inferred from physical interaction 1320.58947753906 1140.15124511719 1333.50732421875 1375.79406738281 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL007W /GEN=CAP1 /DB_XREF=GI:6322845 /SEG=NC_001143:+428945,429751 /DEF=capping - addition of actin subunits /NOTE=Cap1p; go_component: F-actin capping protein complex [goid GO:0008290] [evidence IDA] [pmid 9153752]; go_component: actin cortical patch (sensu Fungi) [goid GO:0030479] [evidence IDA] [pmid 10652251]; go_function: protein binding [goid GO:0005515] [evidence IDA] [pmid 1315784]; go_process: actin filament organization [goid GO:0007015] [evidence IMP] [pmid 9153752]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IPI] [pmid 10652251]; go_process: endocytosis [goid GO:0006897] [evidence IPI] [pmid 10652251]; go_process: response to osmotic stress [goid GO:0006970] [evidence IMP] [pmid 10652251] --- --- --- --- --- --- S0001490 // CAP1 SGDID:S0001490, Chr XI from 428945-429751, Verified ORF // sgd // 11 // --- /// GENSCAN00000018412 // cdna:Genscan chromosome:SGD1:XI:428945:429751:1 // ensembl // 11 // --- /// GENEFINDER00000023111 // cdna:GeneFinder chromosome:SGD1:XI:428945:429751:1 // ensembl // 11 // --- /// YKL007W // cdna:known chromosome:SGD1:XI:428945:429751:1 gene:YKL007W // ensembl // 11 // --- --- No cerevisiae_gene 1.09506678009208 -1.15825815495499 -1.03086593920863 1.00978187915276 1.04180299084817 Max fold change below threshold 4 1.15825815495499 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777295_at YDL111C.S1 Protein involved in rRNA processing; component of the exosome 3->5 exonuclease complex with Rrp4p, Rrp41p, Rrp43p and Dis3p 1.15809744440094 946.007751464844 1010.05621337891 RRP42 6365 // 35S primary transcript processing // traceable author statement /// 6402 // mRNA catabolism // inferred from physical interaction 176 // nuclear exosome (RNase complex) // inferred from direct assay /// 177 // cytoplasmic exosome (RNase complex) // inferred from direct assay 175 // 3'-5'-exoribonuclease activity // traceable author statement 996.956481933594 952.183654785156 939.831848144531 1023.15594482422 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL111C /GEN=RRP42 /DB_XREF=GI:6320092 /SEG=NC_001136:-263313,264110 /DEF=Ribosomal RNA Processing /NOTE=Rrp42p; go_component: cytoplasmic exosome (RNase complex) [goid GO:0000177] [evidence IDA] [pmid 10465791]; go_component: nuclear exosome (RNase complex) [goid GO:0000176] [evidence IDA] [pmid 10465791]; go_function: 3'-5'-exoribonuclease activity [goid GO:0000175] [evidence TAS] [pmid 10690410]; go_process: 35S primary transcript processing [goid GO:0006365] [evidence TAS] [pmid 10690410]; go_process: mRNA catabolism [goid GO:0006402] [evidence IPI] [pmid 10465791] --- --- --- --- scop // a.4.5.MarR-like transcriptional regulators // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; MarR-like transcriptional regulators // 4.40000009536743 --- S0002269 // RRP42 SGDID:S0002269, Chr IV from 264110-263313, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025015 // cdna:Genscan chromosome:SGD1:IV:263313:264110:-1 // ensembl // 11 // --- /// YDL111C // cdna:known chromosome:SGD1:IV:263313:264110:-1 gene:YDL111C // ensembl // 11 // --- --- No cerevisiae_gene 1.13938448531251 -1.04702120953603 1.15809744440094 -1.06078175995189 1.02627944485582 Max fold change below threshold 4 1.15809744440094 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778220_at YPL229W.S1 Hypothetical protein 1.15799100664346 918.258728027344 886.227844238281 --- --- 5737 // cytoplasm // inferred from direct assay --- 833.310974121094 871.550842285156 964.966613769531 939.144714355469 0.000732421991415322 0.00292969006113708 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL229W /GEN=FAS2 /DB_XREF=GI:6325027 /SEG=NC_001148:+117067,117687 /DEF=Hypothetical ORF /NOTE=Ypl229wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0006150 // YPL229W SGDID:S0006150, Chr XVI from 117067-117687, Uncharacterized ORF // sgd // 11 // --- /// YPL229W // cdna:known chromosome:SGD1:XVI:117067:117687:1 gene:YPL229W // ensembl // 11 // --- --- No cerevisiae_gene 1.00565474156643 1.0458890730491 1.10921347718778 1.15799100664346 1.12700389592973 Max fold change below threshold 4 1.15799100664346 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776427_at YNL241C.S1 Glucose-6-phosphate dehydrogenase 1.15763518596012 3189.62683105469 2801.92053222656 ZWF1 9051 // pentose-phosphate shunt, oxidative branch // inferred from sequence similarity /// 42542 // response to hydrogen peroxide // inferred from mutant phenotype 5737 // cytoplasm // inferred from direct assay 4345 // glucose-6-phosphate 1-dehydrogenase activity // inferred from sequence similarity 2852.92236328125 3076.6103515625 3302.64331054688 2750.91870117188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL241C /GEN=ZWF1 /DB_XREF=GI:6324088 /SEG=NC_001146:-196425,197942 /DEF=Glucose-6-phosphate dehydrogenase /NOTE=Zwf1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: glucose-6-phosphate 1-dehydrogenase activity [goid GO:0004345] [evidence ISS] [pmid 2269430]; go_process: pentose-phosphate shunt [goid GO:0006098] [evidence ISS] [pmid 2269430] --- --- --- --- scop // a.4.1.Tetracyclin repressor-like, N-terminal domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain // 5.09999990463257 --- S0005185 // ZWF1 SGDID:S0005185, Chr XIV from 197942-196425, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019847 // cdna:Genscan chromosome:SGD1:XIV:196425:197942:-1 // ensembl // 11 // --- /// GENEFINDER00000020580 // cdna:GeneFinder chromosome:SGD1:XIV:196425:197942:-1 // ensembl // 11 // --- /// YNL241C // cdna:known chromosome:SGD1:XIV:196425:197942:-1 gene:YNL241C // ensembl // 11 // --- --- No cerevisiae_gene 1.03615390605679 1.07840661602301 -1.12921830885267 1.15763518596012 -1.0370798533835 Max fold change below threshold 4 1.15763518596012 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771664_at YMR315W.S1 Hypothetical protein 1.1573714105579 2925.43237304688 2740.17687988281 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 2820.61108398438 3015.95971679688 2834.90502929688 2659.74267578125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR315W /GEN=PRE5 /DB_XREF=GI:6323975 /SEG=NC_001145:+902799,903848 /DEF=Hypothetical ORF /NOTE=Ymr315wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004932 // YMR315W SGDID:S0004932, Chr XIII from 902799-903848, Uncharacterized ORF // sgd // 10 // --- /// GENSCAN00000018981 // cdna:Genscan chromosome:SGD1:XIII:902799:903848:1 // ensembl // 10 // --- /// GENEFINDER00000021821 // cdna:GeneFinder chromosome:SGD1:XIII:902799:903848:1 // ensembl // 10 // --- /// YMR315W // cdna:known chromosome:SGD1:XIII:902799:903848:1 gene:YMR315W // ensembl // 10 // --- --- No cerevisiae_gene 1.1573714105579 1.06925755696051 -1.14711002462272 1.00506767678595 -1.0604826961901 Max fold change below threshold 4 1.1573714105579 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772023_at YKL091C.S1 Sec14p homolog 1.15581673945631 3108.07373046875 2942.57873535156 --- --- 5634 // nucleus // inferred from direct assay --- 3102.43872070313 3368.90185546875 2847.24560546875 2782.71875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL091C /GEN=BUD2 /DB_XREF=GI:6322759 /SEG=NC_001143:-269363,270295 /DEF=Sec14p homolog /NOTE=Ykl091cp; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 12869188]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0001574 // YKL091C SGDID:S0001574, Chr XI from 270295-269363, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018349 // cdna:Genscan chromosome:SGD1:XI:269363:270295:-1 // ensembl // 11 // --- /// GENEFINDER00000023145 // cdna:GeneFinder chromosome:SGD1:XI:269363:270295:-1 // ensembl // 11 // --- /// YKL091C // cdna:known chromosome:SGD1:XI:269363:270295:-1 gene:YKL091C // ensembl // 11 // --- --- No cerevisiae_gene -1.15581673945631 1.08588828297799 -1.08218704915398 -1.08962806536402 -1.11489482029153 Max fold change below threshold 4 1.15581673945631 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777738_at YMR072W.S1 Mitochondrial DNA-binding protein involved in mitochondrial DNA replication and recombination, member of HMG1 DNA-binding protein family; activity may be regulated by protein kinase A phosphorylation 1.15542204220691 3115.26708984375 2676.46350097656 ABF2 1 // mitochondrion inheritance // inferred from mutant phenotype /// 2 // mitochondrial genome maintenance // inferred from mutant phenotype 262 // mitochondrial chromosome // inferred from direct assay /// 42645 // mitochondrial nucleoid // inferred from direct assay 3677 // DNA binding // inferred from direct assay /// 8301 // DNA bending activity // inferred from direct assay 2810.21142578125 3246.98022460938 2983.55395507813 2542.71557617188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR072W /GEN=ABF2 /DB_XREF=GI:6323717 /SEG=NC_001145:+411568,412119 /DEF=Mitochondrial DNA-binding protein involved in mitochondrial DNA replication and recombination, member of HMG1 DNA-binding protein family; activity may be regulated by protein kinase A phosphorylation /NOTE=Abf2p; go_component: mitochondrial chromosome [goid GO:0000262] [evidence IDA] [pmid 9581629]; go_function: DNA binding [goid GO:0003677] [evidence IDA] [pmid 9581629]; go_process: mitochondrial genome maintenance [goid GO:0000002] [evidence IMP] [pmid 9581629]; go_process: mitochondrion inheritance [goid GO:0000001] [evidence IMP] [pmid 9581629] --- --- --- --- --- --- S0004676 // ABF2 SGDID:S0004676, Chr XIII from 411568-412119, Verified ORF // sgd // 11 // --- /// AJ223169 // Saccharomyces cerevisiae mRNA for cisplatin-damaged DNA recognition protein CDRP1. // gb // 11 // --- /// GENSCAN00000018772 // cdna:Genscan chromosome:SGD1:XIII:411568:412119:1 // ensembl // 11 // --- /// GENEFINDER00000022057 // cdna:GeneFinder chromosome:SGD1:XIII:411568:412119:1 // ensembl // 11 // --- /// YMR072W // cdna:known chromosome:SGD1:XIII:411568:412119:1 gene:YMR072W // ensembl // 11 // --- --- No cerevisiae_gene 1.11988027410499 1.15542204220691 1.08122520877666 1.06168309177972 -1.10520085381004 Max fold change below threshold 4 1.15542204220691 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770113_at YNL287W.S1 Gamma subunit of coatomer, a heptameric protein complex that together with Arf1p forms the COPI coat; involved in ER to Golgi transport of selective cargo 1.15506238746241 2543.80773925781 2757.78295898438 SEC21 6888 // ER to Golgi transport // inferred from mutant phenotype /// 6890 // retrograde transport, Golgi to ER // inferred from mutant phenotype 30126 // COPI vesicle coat // inferred from direct assay --- 2835.16577148438 2633.05908203125 2454.55639648438 2680.40014648438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YNL287W /GEN=SEC21 /DB_XREF=GI:6324042 /SEG=NC_001146:+91992,94799 /DEF=non-clathrin coat protein involved in transport between ER and Golgi /NOTE=Sec21p; go_component: COPI vesicle coat [goid GO:0030126] [evidence IDA] [pmid 1461285]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 1461285]; go_process: retrograde transport, Golgi to ER [goid GO:0006890] [evidence IMP] [pmid 8001155] --- --- --- --- --- --- S0005231 // SEC21 SGDID:S0005231, Chr XIV from 91992-94799, Verified ORF // sgd // 10 // --- /// GENSCAN00000019811 // cdna:Genscan chromosome:SGD1:XIV:91992:94799:1 // ensembl // 10 // --- /// GENEFINDER00000020422 // cdna:GeneFinder chromosome:SGD1:XIV:91992:94799:1 // ensembl // 10 // --- /// YNL287W // cdna:known chromosome:SGD1:XIV:91992:94799:1 gene:YNL287W // ensembl // 10 // --- --- No cerevisiae_gene -1.06638922837364 -1.07675736971964 -1.04194587907518 -1.15506238746241 -1.05773974650874 Max fold change below threshold 4 1.15506238746241 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770911_at YIR011C.S1 Protein that interacts with the karyopherin Srp1p; may have a role with Srp1p in ubiquitin-mediated protein degradation 1.15380411645219 1285.9736328125 1465.14233398438 STS1 6511 // ubiquitin-dependent protein catabolism // inferred from genetic interaction /// 6511 // ubiquitin-dependent protein catabolism // inferred from physical interaction /// 7059 // chromosome segregation // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay --- 1429.36462402344 1260.81726074219 1311.13000488281 1500.92004394531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIR011C /GEN=STS1 /DB_XREF=GI:6322201 /SEG=NC_001141:-377284,378243 /DEF=restores protein transport when overexpressed and rRNA stability to a sec23 mutation /NOTE=Sts1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10913188]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: chromosome segregation [goid GO:0007059] [evidence IMP] [pmid 8065366]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence IGI,IPI] [pmid 10913188] --- --- --- --- --- --- S0001450 // STS1 SGDID:S0001450, Chr IX from 378243-377284, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016485 // cdna:Genscan chromosome:SGD1:IX:377284:378162:-1 // ensembl // 11 // --- /// YIR011C // cdna:known chromosome:SGD1:IX:377284:378243:-1 gene:YIR011C // ensembl // 11 // --- --- No cerevisiae_gene 1.15380411645219 -1.133681040488 -1.04351817425771 -1.09017764729684 1.05006099823603 Max fold change below threshold 4 1.15380411645219 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771599_at YIL112W.S1 Subunit of the Set3 complex, which is a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; potential Cdc28p substrate 1.15332106397905 600.778381347656 595.296569824219 HOS4 16575 // histone deacetylation // inferred from physical interaction /// 16575 // histone deacetylation // inferred from direct assay /// 45835 // negative regulation of meiosis // inferred from physical interaction 118 // histone deacetylase complex // inferred from physical interaction 17136 // NAD-dependent histone deacetylase activity // inferred from physical interaction /// 17136 // NAD-dependent histone deacetylase activity // inferred from direct assay /// 45129 // NAD-independent histone deacetylase activity // inferred from physical interaction /// 45129 // NAD-independent histone deacetylase activity // inferred from direct assay 612.898071289063 662.795776367188 538.760986328125 577.695068359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL112W /GEN=HOS4 /DB_XREF=GI:6322079 /SEG=NC_001141:+151592,154843 /DEF=Subunit of the Set3 complex, which is a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; potential Cdc28p substrate /NOTE=Hos4p; go_component: histone deacetylase complex [goid GO:0000118] [evidence IPI] [pmid 11711434]; go_function: NAD-dependent histone deacetylase activity [goid GO:0017136] [evidence IDA,IPI] [pmid 11711434]; go_function: NAD-independent histone deacetylase activity [goid GO:0045129] [evidence IDA,IPI] [pmid 11711434]; go_process: histone deacetylation [goid GO:0016575] [evidence IDA,IPI] [pmid 11711434]; go_process: negative regulation of meiosis [goid GO:0045835] [evidence IPI] [pmid 11711434] --- --- --- --- --- --- S0001374 // HOS4 SGDID:S0001374, Chr IX from 151592-154843, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000016393 // cdna:Genscan chromosome:SGD1:IX:151592:154843:1 // ensembl // 11 // --- /// GENEFINDER00000018991 // cdna:GeneFinder chromosome:SGD1:IX:151592:154843:1 // ensembl // 11 // --- /// YIL112W // cdna:known chromosome:SGD1:IX:151592:154843:1 gene:YIL112W // ensembl // 11 // --- --- No cerevisiae_gene -1.15111357444874 1.08141272980869 -1.15332106397905 -1.13760663233285 -1.06093699748842 Max fold change below threshold 4 1.15332106397905 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772774_at YOL130W.S1 Plasma membrane Mg(2+) transporter, expression and turnover are regulated by Mg(2+) concentration; overexpression confers increased tolerance to Al(3+) and Ga(3+) ions 1.15262822402808 874.844177246094 845.296722412109 ALR1 15674 // di-, tri-valent inorganic cation transport // inferred from mutant phenotype /// 15674 // di-, tri-valent inorganic cation transport // inferred from sequence similarity /// 15693 // magnesium ion transport // inferred from direct assay 5886 // plasma membrane // inferred from mutant phenotype 15082 // di-, tri-valent inorganic cation transporter activity // inferred from mutant phenotype /// 15082 // di-, tri-valent inorganic cation transporter activity // inferred from sequence similarity 823.437561035156 895.656127929688 854.0322265625 867.155883789063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL130W /GEN=ALR1 /DB_XREF=GI:6324442 /SEG=NC_001147:+74399,76978 /DEF=Plasma membrane Mg(2+) transporter, expression and turnover are regulated by Mg(2+) concentration; overexpression confers increased tolerance to Al(3+) and Ga(3+) ions /NOTE=Alr1p; go_component: plasma membrane [goid GO:0005886] [evidence IMP] [pmid 9430719]; go_function: di-, tri-valent inorganic cation transporter activity [goid GO:0015082] [evidence IMP,ISS] [pmid 9430719]; go_process: di-, tri-valent inorganic cation transport [goid GO:0015674] [evidence IMP,ISS] [pmid 9430719]; go_process: magnesium ion transport [goid GO:0015693] [evidence IDA] [pmid 12167543] --- --- --- --- --- S0005490 // span:772-794 // numtm:1 S0005490 // ALR1 SGDID:S0005490, Chr XV from 74399-76978, Verified ORF // sgd // 11 // --- /// GENSCAN00000017363 // cdna:Genscan chromosome:SGD1:XV:74399:76978:1 // ensembl // 11 // --- /// GENEFINDER00000022650 // cdna:GeneFinder chromosome:SGD1:XV:74399:76978:1 // ensembl // 11 // --- /// YOL130W // cdna:known chromosome:SGD1:XV:74399:76978:1 gene:YOL130W // ensembl // 11 // --- --- No cerevisiae_gene -1.15262822402808 1.08770375595175 1.09250273567194 1.03715480927161 1.05309245633506 Max fold change below threshold 4 1.15262822402808 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773139_at YCL057W.S1 Zinc metalloendopeptidase, found in the cytoplasm and intermembrane space of mitochondria; with Cym1p, involved in degradation of mitochondrial proteins and of presequence peptides cleaved from imported proteins 1.15185530077315 786.879974365234 771.568695068359 PRD1 6508 // proteolysis and peptidolysis // inferred from mutant phenotype /// 6508 // proteolysis and peptidolysis // inferred from direct assay 5737 // cytoplasm // inferred from direct assay /// 5737 // cytoplasm // traceable author statement /// 5758 // mitochondrial intermembrane space // inferred from direct assay 4222 // metalloendopeptidase activity // inferred from mutant phenotype /// 4222 // metalloendopeptidase activity // inferred from direct assay /// 4222 // metalloendopeptidase activity // inferred from sequence similarity /// 4247 // saccharolysin activity // inferred from direct assay 738.418823242188 723.208312988281 850.551635742188 804.718566894531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL057W /GEN=PRD1 /DB_XREF=GI:6319793 /SEG=NC_001135:+24768,26906 /DEF=Zinc metalloendopeptidase, found in the cytoplasm and intermembrane space of mitochondria /NOTE=Prd1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA,TAS] [pmid 8307027]; go_component: mitochondrial intermembrane space [goid GO:0005758] [evidence IDA] [pmid 8307027]; go_function: metalloendopeptidase activity [goid GO:0004222] [evidence IDA,IMP,ISS] [pmid 8307027]; go_function: saccharolysin activity [goid GO:0004247] [evidence IDA] [pmid 8307027]; go_process: proteolysis and peptidolysis [goid GO:0006508] [evidence IDA,IMP] [pmid 8307027] --- --- --- --- --- --- S0000562 // PRD1 SGDID:S0000562, Chr III from 24768-26906, Verified ORF // sgd // 11 // --- /// GENSCAN00000022422 // cdna:Genscan chromosome:SGD1:III:24768:26906:1 // ensembl // 11 // --- /// GENEFINDER00000023381 // cdna:GeneFinder chromosome:SGD1:III:24846:26906:1 // ensembl // 11 // --- /// YCL057W // cdna:known chromosome:SGD1:III:24768:26906:1 gene:YCL057W // ensembl // 11 // --- --- No cerevisiae_gene -1.10916562480203 -1.02103199034184 1.12064294566803 1.15185530077315 1.08978609640697 Max fold change below threshold 4 1.15185530077315 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775809_at YDL006W.S1 Type 2C protein phosphatase (PP2C); inactivates the osmosensing MAPK cascade by dephosphorylating Hog1p; mutation delays mitochondrial inheritance; deletion reveals defects in precursor tRNA splicing, sporulation and cell separation 1.14932838417718 290.175628662109 341.165756225586 PTC1 1 // mitochondrion inheritance // inferred from mutant phenotype /// 173 // inactivation of MAPK activity during osmolarity sensing // inferred from genetic interaction /// 173 // inactivation of MAPK activity during osmolarity sensing // inferred from mutant phenotype /// 173 // inactivation of MAPK activity during osmolarity sensing // inferred from direct assay /// 6388 // tRNA splicing // inferred from mutant phenotype /// 6470 // protein amino acid dephosphorylation // inferred from direct assay 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 15071 // protein phosphatase type 2C activity // inferred from direct assay 327.287567138672 284.764190673828 295.587066650391 355.0439453125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL006W /GEN=PTC1 /DB_XREF=GI:6320198 /SEG=NC_001136:+439906,440751 /DEF=serine-threonine protein phosphatase /NOTE=Ptc1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11113180]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11113180]; go_function: protein phosphatase type 2C activity [goid GO:0015071] [evidence IDA] [pmid 10580002]; go_process: mitochondrion inheritance [goid GO:0000001] [evidence IMP] [pmid 9529388]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence IDA] [pmid 10580002]; go_process: response to osmotic stress [goid GO:0006970] [evidence IGI] [pmid 11113180]; go_process: tRNA splicing [goid GO:0006388] [evidence IMP] [pmid 8196609] --- --- --- --- --- --- S0002164 // PTC1 SGDID:S0002164, Chr IV from 439906-440751, Verified ORF // sgd // 11 // --- /// GENSCAN00000025094 // cdna:Genscan chromosome:SGD1:IV:439906:440751:1 // ensembl // 11 // --- /// GENEFINDER00000023464 // cdna:GeneFinder chromosome:SGD1:IV:440008:440751:1 // ensembl // 11 // --- /// YDL006W // cdna:known chromosome:SGD1:IV:439906:440751:1 gene:YDL006W // ensembl // 11 // --- --- No cerevisiae_gene -1.01499644381728 -1.14932838417718 -1.09421859478802 -1.1072458982983 1.08480731002552 Max fold change below threshold 4 1.14932838417718 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771886_at YBR016W.S1 Plasma membrane protein of unknown function; has similarity to hydrophilins, which are hydrophilic, glycine-rich proteins involved in the adaptive response to hyperosmotic conditions 1.14908754754507 3058.80603027344 3242.23657226563 --- 9269 // response to dessication // inferred from expression pattern /// 9269 // response to dessication // inferred from sequence similarity 5886 // plasma membrane // inferred from direct assay --- 3369.47143554688 3153.47265625 2964.13940429688 3115.00170898438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR016W /GEN=MNN2 /DB_XREF=GI:6319490 /SEG=NC_001134:+270209,270595 /DEF=Plasma membrane protein of unknown function; has similarity to hydrophilins, which are hydrophilic, glycine-rich proteins involved in the adaptive response to hyperosmotic conditions /NOTE=Ybr016wp; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 12514182]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: response to dessication [goid GO:0009269] [evidence IEP,ISS] [pmid 10681550] --- --- --- --- --- --- S0000220 // YBR016W SGDID:S0000220, Chr II from 270247-270633, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000022292 // cdna:GeneFinder chromosome:SGD1:II:270247:270633:1 // ensembl // 11 // --- /// YBR016W // cdna:known chromosome:SGD1:II:270247:270633:1 gene:YBR016W // ensembl // 11 // --- --- No cerevisiae_gene -1.14908754754507 -1.06849552948201 1.10839261797121 -1.13674526598257 -1.08169168120472 Max fold change below threshold 4 1.14908754754507 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776478_at YKL210W.S1 Ubiquitin activating enzyme, involved in ubiquitin-mediated protein degradation and essential for viability 1.14829490297216 2821.91821289063 2714.25634765625 UBA1 6512 // ubiquitin cycle // traceable author statement 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 4839 // ubiquitin activating enzyme activity // traceable author statement 2771.48852539063 2692.35107421875 2951.4853515625 2657.02416992188 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL210W /GEN=UBA1 /DB_XREF=GI:6322639 /SEG=NC_001143:+39164,42238 /DEF=Ubiquitin activating enzyme, involved in ubiquitin-mediated protein degradation and essential for viability /NOTE=Uba1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 7629121]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 7629121]; go_function: ubiquitin activating enzyme activity [goid GO:0004839] [evidence TAS] [pmid 8982460]; go_process: ubiquitin cycle [goid GO:0006512] [evidence TAS] [pmid 8982460] --- --- --- --- --- --- S0001693 // UBA1 SGDID:S0001693, Chr XI from 39164-42238, Verified ORF // sgd // 11 // --- /// GENSCAN00000018262 // cdna:Genscan chromosome:SGD1:XI:39164:42238:1 // ensembl // 11 // --- /// GENEFINDER00000023135 // cdna:GeneFinder chromosome:SGD1:XI:39164:42238:1 // ensembl // 11 // --- /// YKL210W // cdna:known chromosome:SGD1:XI:39164:42238:1 gene:YKL210W // ensembl // 11 // --- --- No cerevisiae_gene -1.14829490297216 -1.02939343681055 1.12219440827124 1.06494590344606 -1.04307990750122 Max fold change below threshold 4 1.14829490297216 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774200_at YPL137C.S1 Glc7-interacting protein whose overexpression relocalizes Glc7p from the nucleus 1.14674735909129 1049.02038574219 991.549621582031 --- --- 5737 // cytoplasm // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5783 // endoplasmic reticulum // inferred from direct assay --- 963.336303710938 1094.56506347656 1003.47570800781 1019.76293945313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPL137C /GEN=SPP1 /DB_XREF=GI:6325121 /SEG=NC_001148:-292816,296646 /DEF=Hypothetical ORF /NOTE=Ypl137cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- scop // a.4.5.Replication initiation protein // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; Replication initiation protein // 2.09999990463257 --- S0006058 // YPL137C SGDID:S0006058, Chr XVI from 296646-292816, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000017084 // cdna:Genscan chromosome:SGD1:XVI:292816:296646:-1 // ensembl // 11 // --- /// GENEFINDER00000020855 // cdna:GeneFinder chromosome:SGD1:XVI:292816:296646:-1 // ensembl // 11 // --- /// YPL137C // cdna:known chromosome:SGD1:XVI:292816:296646:-1 gene:YPL137C // ensembl // 11 // --- --- No cerevisiae_gene -1.14674735909129 1.13622320601861 -1.08170488450693 1.04166707321446 1.05857418175234 Max fold change below threshold 4 1.14674735909129 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776601_at YPR133W-A.S1 Small mitochondrial outer membrane protein crucial to a binding relay for the import of proteins into mitochondria; subunit on the outer mouth of the TOM channel that accepts precursors from the receptors Tom20p and Tom22p 1.14572792839541 1654.76245117188 1603.43743896484 TOM5 30150 // mitochondrial matrix protein import // inferred from mutant phenotype /// 30150 // mitochondrial matrix protein import // inferred from physical interaction 5742 // mitochondrial outer membrane translocase complex // inferred from physical interaction 8565 // protein transporter activity // inferred from mutant phenotype /// 8565 // protein transporter activity // inferred from physical interaction 1578.98388671875 1774.45434570313 1535.07055664063 1627.89099121094 0.00195312988944352 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR133W-A /GEN=TOM5 /DB_XREF=GI:6325391 /SEG=NC_001148:+797551,797703 /DEF=Translocase of the Outer Mitochondrial membrane /NOTE=Tom5p; go_component: mitochondrial outer membrane translocase complex [goid GO:0005742] [evidence IPI] [pmid 9217162]; go_function: protein transporter activity [goid GO:0008565] [evidence IMP,IPI] [pmid 9217162]; go_process: mitochondrial matrix protein import [goid GO:0030150] [evidence IMP,IPI] [pmid 9217162] --- --- --- --- --- S0006433 // span:28-45 // numtm:1 S0006433 // TOM5 SGDID:S0006433, Chr XVI from 797553-797705, Verified ORF // sgd // 11 // --- /// YPR133W-A // cdna:known chromosome:SGD1:XVI:797553:797705:1 gene:YPR133W-A // ensembl // 11 // --- --- No cerevisiae_gene 1.14572792839541 1.12379509419224 1.09488848736099 -1.02860671770959 1.03097378314216 Max fold change below threshold 4 1.14572792839541 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770572_at YMR237W.S1 Protein that colocalizes with clathrin-coated vesicles; involved in transport at the trans-Golgi 1.1452429832593 1690.19030761719 1742.05700683594 --- --- 30136 // clathrin-coated vesicle // inferred from direct assay --- 1744.90686035156 1523.61279296875 1856.76782226563 1739.20715332031 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR237W /GEN=TAF9 /DB_XREF=GI:6323893 /SEG=NC_001145:+743748,745922 /DEF=Protein involved in transport at the trans-Golgi /NOTE=Ymr237wp --- --- --- --- --- --- S0004850 // BCH1 SGDID:S0004850, Chr XIII from 743748-745922, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018914 // cdna:Genscan chromosome:SGD1:XIII:743748:745922:1 // ensembl // 11 // --- /// GENEFINDER00000022024 // cdna:GeneFinder chromosome:SGD1:XIII:744318:745922:1 // ensembl // 11 // --- /// YMR237W // cdna:known chromosome:SGD1:XIII:743748:745922:1 gene:YMR237W // ensembl // 11 // --- --- No cerevisiae_gene -1.07096123238921 -1.1452429832593 1.04677704230861 1.06410712483045 -1.0032771869759 Max fold change below threshold 4 1.1452429832593 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774478_at YGL134W.S1 Pho85p cyclin; recruits, activates, and targets Pho85p cyclin-dependent protein kinase to its substrate 1.14439785900592 883.750183105469 982.281402587891 PCL10 5979 // regulation of glycogen biosynthesis // inferred from mutant phenotype /// 5979 // regulation of glycogen biosynthesis // inferred from genetic interaction /// 5981 // regulation of glycogen catabolism // inferred from genetic interaction 307 // cyclin-dependent protein kinase holoenzyme complex // traceable author statement 16538 // cyclin-dependent protein kinase regulator activity // traceable author statement 976.485412597656 914.225952148438 853.2744140625 988.077392578125 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL134W /GEN=PCL10 /DB_XREF=GI:6321304 /SEG=NC_001139:+255666,256967 /DEF=PHO85 cyclin /NOTE=Pcl10p; go_component: cyclin-dependent protein kinase holoenzyme complex [goid GO:0000307] [evidence TAS] [pmid 11602261]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS] [pmid 11602261]; go_process: regulation of glycogen biosynthesis [goid GO:0005979] [evidence IGI,IMP] [pmid 9584169]; go_process: regulation of glycogen catabolism [goid GO:0005981] [evidence IGI] [pmid 11602261] --- --- --- --- --- --- S0003102 // PCL10 SGDID:S0003102, Chr VII from 255668-256969, Verified ORF // sgd // 11 // --- /// GENSCAN00000019249 // cdna:Genscan chromosome:SGD1:VII:255668:256969:1 // ensembl // 11 // --- /// GENEFINDER00000021466 // cdna:GeneFinder chromosome:SGD1:VII:255668:256969:1 // ensembl // 11 // --- /// YGL134W // cdna:known chromosome:SGD1:VII:255668:256969:1 gene:YGL134W // ensembl // 11 // --- --- No cerevisiae_gene 1.08072881003044 -1.0681007362599 1.09565611335445 -1.14439785900592 1.0118711245769 Max fold change below threshold 4 1.14439785900592 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779639_at YOL062C.S1 Mu2-like subunit of the clathrin associated protein complex (AP-2); involved in vesicle transport 1.14330737917588 1071.33972167969 1169.09326171875 APM4 6886 // intracellular protein transport // inferred from sequence similarity /// 16192 // vesicle-mediated transport // traceable author statement 30122 // AP-2 adaptor complex // inferred from sequence similarity --- 1108.08703613281 969.1943359375 1173.48510742188 1230.09948730469 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL062C /GEN=APM4 /DB_XREF=GI:6324510 /SEG=NC_001147:-210519,211994 /DEF=Clathrin associated protein, medium subunit /NOTE=Apm4p; go_component: AP-2 adaptor complex [goid GO:0030122] [evidence ISS] [pmid 11598180]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: intracellular protein transport [goid GO:0006886] [evidence ISS] [pmid 11598180] --- --- --- --- --- --- S0005423 // APM4 SGDID:S0005423, Chr XV from 211994-210519, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017418 // cdna:Genscan chromosome:SGD1:XV:210519:211994:-1 // ensembl // 11 // --- /// GENEFINDER00000022883 // cdna:GeneFinder chromosome:SGD1:XV:210519:211994:-1 // ensembl // 11 // --- /// YOL062C // cdna:known chromosome:SGD1:XV:210519:211994:-1 gene:YOL062C // ensembl // 11 // --- --- No cerevisiae_gene -1.09532275551088 -1.14330737917588 1.1065352171078 1.05901889396459 1.11011089128675 Max fold change below threshold 4 1.14330737917588 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775801_at YGR017W.S1 Hypothetical protein 1.1406315844708 526.259063720703 532.835174560547 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 525.757934570313 510.9208984375 541.597229003906 539.912414550781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR017W /GEN=MSB2 /DB_XREF=GI:6321454 /SEG=NC_001139:+523789,524682 /DEF=Hypothetical ORF /NOTE=Ygr017wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0003249 // YGR017W SGDID:S0003249, Chr VII from 523791-524684, Uncharacterized ORF // sgd // 11 // --- /// GENEFINDER00000021515 // cdna:GeneFinder chromosome:SGD1:VII:523803:524684:1 // ensembl // 11 // --- /// GENSCAN00000019354 // cdna:Genscan chromosome:SGD1:VII:523980:524684:1 // ensembl // 11 // --- /// YGR017W // cdna:known chromosome:SGD1:VII:523791:524684:1 gene:YGR017W // ensembl // 11 // --- YGR018C // ensembl // 5 // Negative Strand Matching Probes No cerevisiae_gene 1.1406315844708 -1.02903979104826 1.12481376286885 1.03012659133055 1.02692204729547 Max fold change below threshold 4 1.1406315844708 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779055_at YDR190C.S1 Essential protein involved in transcription regulation; component of chromatin remodeling complexes; required for assembly and function of the INO80 complex; member of the RUVB-like protein family 1.14061953173448 1447.04125976563 1516.10382080078 RVB1 6338 // chromatin remodeling // inferred from direct assay /// 6338 // chromatin remodeling // inferred from physical interaction /// 6357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 812 // SWR1 complex // inferred from physical interaction /// 5634 // nucleus // inferred from direct assay /// 16585 // chromatin remodeling complex // inferred from direct assay /// 31011 // INO80 complex // inferred from physical interaction 16887 // ATPase activity // inferred from mutant phenotype 1511.041015625 1525.33093261719 1368.75158691406 1521.16662597656 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR190C /GEN=RVB1 /DB_XREF=GI:6320396 /SEG=NC_001136:-840597,841988 /DEF=RUVB-like protein, TIP49a Homologue /NOTE=Rvb1p; go_component: SWR1 complex [goid GO:0000812] [evidence IPI] [pmid 14690608]; go_component: chromatin remodeling complex [goid GO:0016585] [evidence IDA] [pmid 11278922]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 10684247]; go_function: ATPase activity [goid GO:0016887] [evidence IMP] [pmid 11278922]; go_process: chromatin remodeling [goid GO:0006338] [evidence IDA] [pmid 14645854]; go_process: chromatin remodeling [goid GO:0006338] [evidence IPI] [pmid 14690608]; go_process: regulation of transcription from Pol II promoter [goid GO:0006357] [evidence IMP] [pmid 11278922] --- --- --- --- --- --- S0002598 // RVB1 SGDID:S0002598, Chr IV from 841990-840599, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023951 // cdna:GeneFinder chromosome:SGD1:IV:840599:841990:-1 // ensembl // 11 // --- /// GENSCAN00000025242 // cdna:Genscan chromosome:SGD1:IV:840599:841990:-1 // ensembl // 11 // --- /// YDR190C // cdna:known chromosome:SGD1:IV:840599:841990:-1 gene:YDR190C // ensembl // 11 // --- --- No cerevisiae_gene 1.10600892777511 1.00945700139468 -1.14061953173448 -1.10395562647839 1.00670108239741 Max fold change below threshold 4 1.14061953173448 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769981_at YKL135C.S1 Beta-adaptin, large subunit of the clathrin-associated protein (AP-1) complex; binds clathrin; involved in clathrin-dependent Golgi protein sorting 1.14056265739099 1169.72222900391 1109.36175537109 APL2 16192 // vesicle-mediated transport // inferred from sequence similarity /// 16192 // vesicle-mediated transport // traceable author statement /// 16192 // vesicle-mediated transport // inferred from physical interaction 30121 // AP-1 adaptor complex // inferred from sequence similarity /// 30121 // AP-1 adaptor complex // inferred from physical interaction 30276 // clathrin binding // inferred from sequence similarity /// 30276 // clathrin binding // inferred from physical interaction 1078.88623046875 1193.42822265625 1146.01623535156 1139.83728027344 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL135C /GEN=APL2 /DB_XREF=GI:6322714 /SEG=NC_001143:-186467,188647 /DEF=Beta-adaptin, large subunit of the clathrin-associated protein (AP-1) complex /NOTE=Apl2p; go_component: AP-1 adaptor complex [goid GO:0030121] [evidence IPI,ISS] [pmid 10564262]; go_function: clathrin binding [goid GO:0030276] [evidence IPI,ISS] [pmid 10564262]; go_process: vesicle-mediated transport [goid GO:0016192] [evidence IPI,ISS] [pmid 10564262] --- --- --- hanks // 2.1.15 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; MLCK-M // 2.2 --- --- S0001618 // APL2 SGDID:S0001618, Chr XI from 188647-186467, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018315 // cdna:Genscan chromosome:SGD1:XI:186467:188389:-1 // ensembl // 11 // --- /// GENEFINDER00000023076 // cdna:GeneFinder chromosome:SGD1:XI:186467:188647:-1 // ensembl // 11 // --- /// YKL135C // cdna:known chromosome:SGD1:XI:186467:188647:-1 gene:YKL135C // ensembl // 11 // --- YKL136W // ensembl // 7 // Negative Strand Matching Probes No cerevisiae_gene -1.14056265739099 1.10616688669549 1.06474108634347 1.06222157905718 1.05649441811692 Max fold change below threshold 4 1.14056265739099 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1772755_at YDL054C.S1 Protein with similarity to mammalian monocarboxylate permeases, which are involved in transport of monocarboxylic acids across the plasma membrane; mutant is not deficient in monocarboxylate transport 1.13972111339434 1290.52789306641 1398.77703857422 MCH1 6810 // transport // inferred from sequence similarity 16020 // membrane // inferred from sequence similarity 5215 // transporter activity // inferred from sequence similarity /// 8028 // monocarboxylic acid transporter activity // inferred from genetic interaction /// 8028 // monocarboxylic acid transporter activity // inferred from mutant phenotype 1345.44665527344 1187.15246582031 1393.9033203125 1452.107421875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL054C /GEN=MCH1 /DB_XREF=GI:6320149 /SEG=NC_001136:-359825,361285 /DEF=Monocarboxylate Permease Homologue /NOTE=Mch1p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 11536335]; go_function: monocarboxylic acid transporter activity [goid GO:0008028] [evidence IGI,IMP] [pmid 11536335]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 11536335]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 11536335] --- --- --- --- --- S0002212 // span:30-52,93-115,130-152,165-187,213-235,279-301,321-343,350-369,384-406,413-435,455-477 // numtm:11 S0002212 // MCH1 SGDID:S0002212, Chr IV from 361285-359825, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000025059 // cdna:Genscan chromosome:SGD1:IV:359825:361285:-1 // ensembl // 11 // --- /// YDL054C // cdna:known chromosome:SGD1:IV:359825:361285:-1 gene:YDL054C // ensembl // 11 // --- --- No cerevisiae_gene 1.13972111339434 -1.13333939322086 1.01446665406751 1.03601530008577 1.07927535899213 Max fold change below threshold 4 1.13972111339434 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770536_at YGL001C.S1 C-3 sterol dehydrogenase, catalyzes the second of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis 1.13635203363641 2068.59051513672 2326.45776367188 ERG26 6696 // ergosterol biosynthesis // inferred from direct assay 5783 // endoplasmic reticulum // inferred from direct assay /// 5789 // endoplasmic reticulum membrane // inferred from direct assay 252 // C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity // inferred from direct assay 2309.01586914063 2031.95471191406 2105.22631835938 2343.89965820313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL001C /GEN=ERG26 /DB_XREF=GI:6321437 /SEG=NC_001139:-495455,496504 /DEF=C-3 sterol dehydrogenase, catalyzes the second of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis /NOTE=Erg26p; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 11279045]; go_component: endoplasmic reticulum membrane [goid GO:0005789] [evidence IDA] [pmid 12119386]; go_function: C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity [goid GO:0000252] [evidence IDA] [pmid 9811880]; go_process: ergosterol biosynthesis [goid GO:0006696] [evidence IDA] [pmid 9811880] --- --- --- --- --- --- S0002969 // ERG26 SGDID:S0002969, Chr VII from 496506-495457, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019340 // cdna:Genscan chromosome:SGD1:VII:495457:496506:-1 // ensembl // 11 // --- /// GENEFINDER00000021452 // cdna:GeneFinder chromosome:SGD1:VII:495457:496302:-1 // ensembl // 11 // --- /// YGL001C // cdna:known chromosome:SGD1:VII:495457:496506:-1 gene:YGL001C // ensembl // 11 // --- --- No cerevisiae_gene -1.02289255437693 -1.13635203363641 1.1150779431299 -1.09680173053321 1.01510764370601 Max fold change below threshold 4 1.13635203363641 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779842_at YOR039W.S1 protein kinase CK2, beta' subunit 1.13603559703325 1095.95611572266 1169.44311523438 CKB2 82 // G1/S transition of mitotic cell cycle // inferred from physical interaction /// 86 // G2/M transition of mitotic cell cycle // inferred from physical interaction /// 501 // flocculation (sensu Saccharomyces) // inferred from mutant phenotype /// 6356 // regulation of transcription from RNA polymerase I promoter // inferred from direct assay /// 6359 // regulation of transcription from RNA polymerase III promoter // inferred from direct assay /// 6468 // protein amino acid phosphorylation // inferred from direct assay /// 6873 // cell ion homeostasis // inferred from mutant phenotype /// 6974 // response to DNA damage stimulus // inferred from direct assay /// 30468 // establishment of cell polarity (sensu Fungi) // inferred from physical interaction 5956 // protein kinase CK2 complex // inferred from direct assay 8605 // protein kinase CK2 regulator activity // inferred from mutant phenotype /// 8605 // protein kinase CK2 regulator activity // inferred from physical interaction 1094.96594238281 1117.18737792969 1074.72485351563 1243.92028808594 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOR039W /GEN=CKB2 /DB_XREF=GI:6324613 /SEG=NC_001147:+405767,406543 /DEF=protein kinase CK2, beta' subunit /NOTE=Ckb2p; go_component: protein kinase CK2 complex [goid GO:0005956] [evidence IDA] [pmid 9427841]; go_function: protein kinase CK2 activity [goid GO:0004682] [evidence IDA] [pmid 9427841]; go_process: G1/S transition of mitotic cell cycle [goid GO:0000082] [evidence IPI] [pmid 9427841]; go_process: G2/M transition of mitotic cell cycle [goid GO:0000086] [evidence IPI] [pmid 9427841]; go_process: cell ion homeostasis [goid GO:0006873] [evidence IMP] [pmid 9427841]; go_process: establishment of cell polarity (sensu Saccharomyces) [goid GO:0000283] [evidence IPI] [pmid 9427841]; go_process: flocculation (sensu Saccharomyces) [goid GO:0000501] [evidence IMP] [pmid 9427841]; go_process: protein amino acid phosphorylation [goid GO:0006468] [evidence IDA] [pmid 9427841]; go_process: regulation of transcription from Pol I promoter [goid GO:0006356] [evidence IDA] [pmid 11551505]; go_process: regulation of transcription from Pol III promoter [goid GO:0006359] [evidence IDA] [pmid 11551505]; go_process: response to DNA damage stimulus [goid GO:0006974] [evidence IDA] [pmid 11551505] --- --- --- --- --- --- S0005565 // CKB2 SGDID:S0005565, Chr XV from 405767-406543, Verified ORF // sgd // 11 // --- /// GENSCAN00000017494 // cdna:Genscan chromosome:SGD1:XV:405767:406543:1 // ensembl // 11 // --- /// GENEFINDER00000022685 // cdna:GeneFinder chromosome:SGD1:XV:405767:406543:1 // ensembl // 11 // --- /// YOR039W // cdna:known chromosome:SGD1:XV:405767:406543:1 gene:YOR039W // ensembl // 11 // --- --- No cerevisiae_gene 1.00950182503581 1.02029417965139 -1.10085927533199 -1.01883374037641 1.13603559703325 Max fold change below threshold 4 1.13603559703325 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774011_at YIL107C.S1 6-phosphofructo-2-kinase, inhibited by phosphoenolpyruvate and sn-glycerol 3-phosphate, has negligible fructose-2,6-bisphosphatase activity, transcriptional regulation involves protein kinase A 1.13575014657481 1734.06787109375 1826.40393066406 PFK26 6003 // fructose 2,6-bisphosphate metabolism // non-traceable author statement /// 6110 // regulation of glycolysis // non-traceable author statement 5737 // cytoplasm // inferred from curator 3873 // 6-phosphofructo-2-kinase activity // inferred from direct assay /// 3873 // 6-phosphofructo-2-kinase activity // inferred from sequence similarity 1785.98071289063 1775.55725097656 1692.57849121094 1866.8271484375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL107C /GEN=PFK26 /DB_XREF=GI:6322084 /SEG=NC_001141:-163275,165758 /DEF=6-Phosphofructose-2-kinase /NOTE=Pfk26p; go_component: cytoplasm [goid GO:0005737] [evidence IC]; go_function: 6-phosphofructo-2-kinase activity [goid GO:0003873] [evidence IDA,ISS] [pmid 1322693]; go_process: fructose 2,6-bisphosphate metabolism [goid GO:0006003] [evidence NAS]; go_process: regulation of glycolysis [goid GO:0006110] [evidence NAS] --- --- --- ec // 6P21_YEAST // (P40433) 6-phosphofructo-2-kinase 1 (EC 2.7.1.105) (Phosphofructokinase 2 I) (6PF-2-K 1) // 0.0 --- --- S0001369 // PFK26 SGDID:S0001369, Chr IX from 165758-163275, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016397 // cdna:Genscan chromosome:SGD1:IX:163275:165758:-1 // ensembl // 11 // --- /// GENEFINDER00000019020 // cdna:GeneFinder chromosome:SGD1:IX:163275:165758:-1 // ensembl // 11 // --- /// YIL107C // cdna:known chromosome:SGD1:IX:163275:165758:-1 gene:YIL107C // ensembl // 11 // --- --- No cerevisiae_gene 1.13575014657481 -1.00587052989045 -1.10834721221104 -1.05518339159141 1.04526725006791 Max fold change below threshold 4 1.13575014657481 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777396_at YBR127C.S1 Subunit B of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; contains nucleotide binding sites; also detected in the cytoplasm 1.1321059007986 4233.93640136719 3916.08435058594 VMA2 7035 // vacuolar acidification // traceable author statement 221 // hydrogen-transporting ATPase V1 domain // traceable author statement /// 5737 // cytoplasm // inferred from direct assay 46961 // hydrogen-transporting ATPase activity, rotational mechanism // traceable author statement 4158.72607421875 4409.615234375 4058.25756835938 3673.44262695313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBR127C /GEN=VMA2 /DB_XREF=GI:6319603 /SEG=NC_001134:-491225,492778 /DEF=vacuolar H-ATPase regulatory subunit (subunit b), 60 kDa subunit of V1 sector /NOTE=Vma2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: hydrogen-transporting ATPase V1 domain [goid GO:0000221] [evidence TAS] [pmid 9442887]; go_function: hydrogen-transporting ATPase activity, rotational mechanism [goid GO:0046961] [evidence TAS] [pmid 9442887]; go_process: vacuolar acidification [goid GO:0007035] [evidence TAS] [pmid 9442887] --- --- --- --- --- --- S0000331 // VMA2 SGDID:S0000331, Chr II from 492816-491263, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000021242 // cdna:Genscan chromosome:SGD1:II:491263:492816:-1 // ensembl // 11 // --- /// GENEFINDER00000022348 // cdna:GeneFinder chromosome:SGD1:II:491263:492816:-1 // ensembl // 11 // --- /// YBR127C // cdna:known chromosome:SGD1:II:491263:492816:-1 gene:YBR127C // ensembl // 11 // --- --- No cerevisiae_gene -1.01943902115998 1.06032836875494 -1.02282973689645 -1.02475656218637 -1.1321059007986 Max fold change below threshold 4 1.1321059007986 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773181_at YML078W.S1 Mitochondrial peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; involved in protein refolding after import into mitochondria 1.13094090219663 2989.48706054688 2777.73620605469 CPR3 6457 // protein folding // inferred from direct assay 5739 // mitochondrion // inferred from direct assay 3755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay 2888.01416015625 2712.80078125 3266.17333984375 2667.45825195313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML078W /GEN=CPR3 /DB_XREF=GI:6323562 /SEG=NC_001145:+111002,111550 /DEF=Mitochondrial peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; involved in protein refolding after import into mitochondria /NOTE=Cpr3p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 7603990]; go_function: peptidyl-prolyl cis-trans isomerase activity [goid GO:0003755] [evidence IDA] [pmid 7603990]; go_process: protein folding [goid GO:0006457] [evidence IDA] [pmid 7603990] --- --- --- --- --- --- S0004543 // CPR3 SGDID:S0004543, Chr XIII from 111002-111550, Verified ORF // sgd // 11 // --- /// GENSCAN00000018652 // cdna:Genscan chromosome:SGD1:XIII:111002:111550:1 // ensembl // 11 // --- /// GENEFINDER00000022096 // cdna:GeneFinder chromosome:SGD1:XIII:111002:111550:1 // ensembl // 11 // --- /// YML078W // cdna:known chromosome:SGD1:XIII:111002:111550:1 gene:YML078W // ensembl // 11 // --- --- No cerevisiae_gene -1.11359505387932 -1.06458763213181 -1.02861008103975 1.13094090219663 -1.08268392131035 Max fold change below threshold 4 1.13094090219663 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778192_at YDR170C.S1 Guanine nucleotide exchange factor (GEF) for ADP ribosylation factors involved in proliferation of the Golgi, intra-Golgi transport and ER-to-Golgi transport; found in the cytoplasm and on Golgi-associated coated vesicles 1.12986779556711 1618.96514892578 1593.05731201172 SEC7 6888 // ER to Golgi transport // inferred from mutant phenotype /// 6891 // intra-Golgi transport // inferred from mutant phenotype 5770 // late endosome // inferred from direct assay /// 5798 // Golgi vesicle // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 5086 // ARF guanyl-nucleotide exchange factor activity // inferred from direct assay 1531.61730957031 1523.73962402344 1714.19067382813 1654.49731445313 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR170C /GEN=SEC7 /DB_XREF=GI:6320374 /SEG=NC_001136:-796187,802216 /DEF=Involved in protein transport at multiple stages of the secretory pathway /NOTE=Sec7p; go_component: Golgi vesicle [goid GO:0005798] [evidence IDA] [pmid 1729652]; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 1986005]; go_component: late endosome [goid GO:0005770] [evidence IDA] [pmid 12006663]; go_function: ARF guanyl-nucleotide exchange factor activity [goid GO:0005086] [evidence IDA] [pmid 9539714]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IMP] [pmid 9473503]; go_process: intra-Golgi transport [goid GO:0006891] [evidence IMP] [pmid 3042778] --- --- --- --- scop // a.4.1.Centromere-binding // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding // 3.79999995231628 --- S0002577 // SEC7 SGDID:S0002577, Chr IV from 802217-796188, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023652 // cdna:GeneFinder chromosome:SGD1:IV:796188:802217:-1 // ensembl // 11 // --- /// GENSCAN00000025225 // cdna:Genscan chromosome:SGD1:IV:796188:800813:-1 // ensembl // 11 // --- /// YDR170C // cdna:known chromosome:SGD1:IV:796188:802217:-1 gene:YDR170C // ensembl // 11 // --- --- No cerevisiae_gene -1.12986779556711 -1.00516996829555 1.11559918383736 1.11920299092796 1.08022892149037 Max fold change below threshold 4 1.12986779556711 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778017_at YIL062C.S1 Subunit of the ARP2/3 complex, which is required for the motility and integrity of cortical actin patches 1.12741877721563 2486.86413574219 2251.26330566406 ARC15 1 // mitochondrion inheritance // inferred from mutant phenotype /// 1 // mitochondrion inheritance // inferred from physical interaction /// 147 // actin cortical patch assembly // inferred from mutant phenotype 5740 // mitochondrial membrane // traceable author statement /// 5885 // Arp2/3 protein complex // inferred from direct assay 3779 // actin binding // traceable author statement /// 5198 // structural molecule activity // inferred from mutant phenotype 2227.849609375 2511.71948242188 2462.0087890625 2274.67700195313 0.000244141003349796 0.000732421991415322 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL062C /GEN=ARC15 /DB_XREF=GI:6322127 /SEG=NC_001141:-243995,244459 /DEF=Arp complex subunit /NOTE=Arc15p; go_component: Arp2/3 protein complex [goid GO:0005885] [evidence IDA] [pmid 9210376]; go_component: mitochondrial membrane [goid GO:0005740] [evidence TAS] [pmid 10047519]; go_function: actin binding [goid GO:0003779] [evidence TAS] [pmid 10047519]; go_function: structural molecule activity [goid GO:0005198] [evidence IMP] [pmid 10377407]; go_process: actin cortical patch assembly [goid GO:0000147] [evidence IMP] [pmid 10377407] --- --- --- --- --- --- S0001324 // ARC15 SGDID:S0001324, Chr IX from 244459-243995, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000016431 // cdna:Genscan chromosome:SGD1:IX:243995:244459:-1 // ensembl // 11 // --- /// GENEFINDER00000019045 // cdna:GeneFinder chromosome:SGD1:IX:243995:244459:-1 // ensembl // 11 // --- /// YIL062C // cdna:known chromosome:SGD1:IX:243995:244459:-1 gene:YIL062C // ensembl // 11 // --- --- No cerevisiae_gene 1.07101048604359 1.12741877721563 1.05420594586112 1.10510546973285 1.02101909948547 Max fold change below threshold 4 1.12741877721563 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773953_at YGR193C.S1 Dihydrolipoamide dehydrogenase (E3)-binding protein (E3BP) of the mitochondrial pyruvate dehydrogenase (PDH) complex, plays a structural role in the complex by binding and positioning E3 to the dihydrolipoamide acetyltransferase (E2) core 1.12711740559795 1106.17364501953 1199.47290039063 PDX1 6086 // acetyl-CoA biosynthesis from pyruvate // traceable author statement 5739 // mitochondrion // traceable author statement /// 5739 // mitochondrion // inferred from direct assay /// 5967 // pyruvate dehydrogenase complex (sensu Eukaryota) // traceable author statement 5515 // protein binding // inferred from direct assay /// 5515 // protein binding // inferred from mutant phenotype 1127.89477539063 1000.68969726563 1211.65759277344 1271.05102539063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR193C /GEN=PDX1 /DB_XREF=GI:6321632 /SEG=NC_001139:-884512,885744 /DEF=Plays a structural role in pyruvate dehydrogenase complex /NOTE=Pdx1p; go_component: mitochondrion [goid GO:0005739] [evidence TAS] [pmid 2007123]; go_component: pyruvate dehydrogenase complex (sensu Eukarya) [goid GO:0005967] [evidence TAS] [pmid 2007123]; go_function: protein binding [goid GO:0005515] [evidence IDA,IMP] [pmid 2007123]; go_process: acetyl-CoA biosynthesis from pyruvate [goid GO:0006086] [evidence TAS] [pmid 9123965] --- --- --- --- --- --- S0003425 // PDX1 SGDID:S0003425, Chr VII from 885746-884514, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019491 // cdna:Genscan chromosome:SGD1:VII:884514:885629:-1 // ensembl // 11 // --- /// GENEFINDER00000021402 // cdna:GeneFinder chromosome:SGD1:VII:884514:885746:-1 // ensembl // 11 // --- /// YGR193C // cdna:known chromosome:SGD1:VII:884514:885746:-1 gene:YGR193C // ensembl // 11 // --- --- No cerevisiae_gene -1.11743525674202 -1.12711740559795 1.10280967571074 1.07426474455811 1.12692340910119 Max fold change below threshold 4 1.12711740559795 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1770578_at YFR050C.S1 20S proteasome beta-type subunit 1.12703181864651 2956.58837890625 2546.51208496094 PRE4 6511 // ubiquitin-dependent protein catabolism // traceable author statement 19774 // proteasome core complex, beta-subunit complex (sensu Eukaryota) // traceable author statement /// 19774 // proteasome core complex, beta-subunit complex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement 2696.16528320313 2874.5126953125 3038.6640625 2396.85888671875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YFR050C /GEN=PRE4 /DB_XREF=GI:14318575 /SEG=NC_001138:-249053,249853 /DEF=20S proteasome beta-type subunit /NOTE=Pre4p; go_component: proteasome core complex (sensu Eukarya) [goid GO:0005839] [evidence TAS] [pmid 10872471]; go_component: proteasome core complex, beta-subunit complex (sensu Eukarya) [goid GO:0019774] [evidence TAS] [pmid 10500111]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 10872471]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10872471] --- --- --- --- --- --- S0001946 // PRE4 SGDID:S0001946, Chr VI from 249853-249053, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000018571 // cdna:GeneFinder chromosome:SGD1:VI:249053:249853:-1 // ensembl // 11 // --- /// GENSCAN00000023286 // cdna:Genscan chromosome:SGD1:VI:249053:249763:-1 // ensembl // 11 // --- /// YFR050C // cdna:known chromosome:SGD1:VI:249053:249853:-1 gene:YFR050C // ensembl // 11 // --- --- No cerevisiae_gene -1.08800249767346 1.0661485455734 -1.11838729735642 1.12703181864651 -1.12487443384459 Max fold change below threshold 4 1.12703181864651 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775852_at YMR203W.S1 Essential component of the preprotein translocase of the mitochondrial outer membrane (TOM complex) in which it constitutes the core element of the protein conducting pore 1.12636791635566 3056.35754394531 3083.15612792969 TOM40 30150 // mitochondrial matrix protein import // inferred from physical interaction 5739 // mitochondrion // inferred from direct assay /// 5742 // mitochondrial outer membrane translocase complex // inferred from physical interaction 8565 // protein transporter activity // inferred from mutant phenotype 3266.38500976563 2974.494140625 3138.22094726563 2899.92724609375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR203W /GEN=TOM40 /DB_XREF=GI:6323859 /SEG=NC_001145:+668491,669654 /DEF=Translocase of Outer Mitochondrial membrane /NOTE=Tom40p; go_component: mitochondrial outer membrane translocase complex [goid GO:0005742] [evidence IPI] [pmid 8119994]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 11914276]; go_function: protein transporter activity [goid GO:0008565] [evidence IMP] [pmid 2250717]; go_process: mitochondrial matrix protein import [goid GO:0030150] [evidence IPI] [pmid 9774667] --- --- --- --- --- --- S0004816 // TOM40 SGDID:S0004816, Chr XIII from 668491-669654, Verified ORF // sgd // 11 // --- /// GENSCAN00000018885 // cdna:Genscan chromosome:SGD1:XIII:668491:669654:1 // ensembl // 11 // --- /// GENEFINDER00000021788 // cdna:GeneFinder chromosome:SGD1:XIII:668491:669654:1 // ensembl // 11 // --- /// YMR203W // cdna:known chromosome:SGD1:XIII:668491:669654:1 gene:YMR203W // ensembl // 11 // --- --- No cerevisiae_gene 1.08187740099063 -1.09813126378501 -1.10701745835936 -1.04083971927205 -1.12636791635566 Max fold change below threshold 4 1.12636791635566 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779738_at YER058W.S1 Protein required for assembly of cytochrome c oxidase 1.12486497363411 197.277130126953 177.236053466797 PET117 8535 // cytochrome c oxidase complex assembly // inferred from mutant phenotype 5743 // mitochondrial inner membrane // traceable author statement --- 183.281600952148 206.167053222656 188.38720703125 171.190505981445 0.00122069998178631 0.000732421991415322 0.000732421991415322 0.000732421991415322 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YER058W /GEN=PET117 /DB_XREF=GI:6320900 /SEG=NC_001137:+271766,272089 /DEF=Protein required for assembly of cytochrome c oxidase /NOTE=Pet117p; go_component: mitochondrial inner membrane [goid GO:0005743] [evidence TAS] [pmid 8811190]; go_function: molecular_function unknown [goid GO:0005554] [evidence TAS] [pmid 8811190]; go_process: cytochrome c oxidase biogenesis [goid GO:0008535] [evidence IMP] [pmid 8381337] --- --- --- --- --- S0000860 // span:7-26 // numtm:1 S0000860 // PET117 SGDID:S0000860, Chr V from 271766-272089, Verified ORF // sgd // 11 // --- /// GENSCAN00000016851 // cdna:Genscan chromosome:SGD1:V:271766:272089:1 // ensembl // 11 // --- /// GENEFINDER00000019609 // cdna:GeneFinder chromosome:SGD1:V:271766:272089:1 // ensembl // 11 // --- /// YER058W // cdna:known chromosome:SGD1:V:271766:272089:1 gene:YER058W // ensembl // 11 // --- --- No cerevisiae_gene -1.01350556833314 1.12486497363411 -1.04767184190194 1.02785662091873 -1.07062947154332 Max fold change below threshold 4 1.12486497363411 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
AFFX-r2-Sc-SRB4-3_at AFFX-r2-Sc-SRB4-3 subunit of RNA polymerase II holoenzyme/mediator complex 1.12093816418121 822.924896240234 834.495056152344 SRB4 6366 // transcription from RNA polymerase II promoter // inferred from direct assay 119 // mediator complex // inferred from direct assay 16455 // RNA polymerase II transcription mediator activity // inferred from direct assay 786.911254882813 872.663513183594 773.186279296875 882.078857421875 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae /NOTE=CONTROL /DEF=SRB4 SGD:YER022W subunit of RNA polymerase II holoenzymemediator complex (5, M, 3 represent transcript regions 5 prime, Middle, and 3 prime respectively) --- --- --- --- --- --- S0000824 // SRB4 SGDID:S0000824, Chr V from 198811-200874, Verified ORF // sgd // 11 // --- /// GENSCAN00000016824 // cdna:Genscan chromosome:SGD1:V:198811:200874:1 // ensembl // 11 // --- /// GENEFINDER00000019772 // cdna:GeneFinder chromosome:SGD1:V:198811:200874:1 // ensembl // 11 // --- /// YER022W // cdna:known chromosome:SGD1:V:198811:200874:1 gene:YER022W // ensembl // 11 // --- --- AFFX_control cerevisiae_gene -1.06425470619555 1.10897322635645 1.01725139562889 -1.01775118875418 1.12093816418121 Max fold change below threshold 4 1.12093816418121 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774312_at YDL231C.S1 Zinc finger protein containing five transmembrane domains; null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport 1.11957340118876 1431.67456054688 1419.27276611328 BRE4 6897 // endocytosis // inferred from mutant phenotype 16021 // integral to membrane // inferred from sequence similarity --- 1339.2060546875 1493.88708496094 1369.46203613281 1499.33947753906 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL231C /GEN=BRE4 /DB_XREF=GI:6319970 /SEG=NC_001136:-38868,42245 /DEF=contains several putative trans-membrane domains /NOTE=Bre4p; go_component: integral to membrane [goid GO:0016021] [evidence ISS] [pmid 11169758]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: endocytosis [goid GO:0006897] [evidence IMP] [pmid 11378903] --- --- --- --- scop // a.2.7.Methicillin resistance protein FemA probable tRNA-binding // All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm // 2.09999990463257 S0002390 // span:145-167,177-194,199-221,226-248,255-272,285-307,747-769,779-801,840-862 // numtm:9 S0002390 // BRE4 SGDID:S0002390, Chr IV from 42245-38868, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023565 // cdna:GeneFinder chromosome:SGD1:IV:38868:41528:-1 // ensembl // 11 // --- /// GENSCAN00000024929 // cdna:Genscan chromosome:SGD1:IV:38868:42245:-1 // ensembl // 11 // --- /// YDL231C // cdna:known chromosome:SGD1:IV:38868:42245:-1 gene:YDL231C // ensembl // 11 // --- --- No cerevisiae_gene -1.04019298244616 1.11550203923588 1.07888630667512 1.02259247659418 1.11957340118876 Max fold change below threshold 4 1.11957340118876 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769314_at YDR481C.S1 Repressible alkaline phosphatase, a glycoprotein localized to the vacuole; regulated by levels of inorganic phosphate and by a system consisting of Pho4p, Pho9p, Pho80p, Pho81p and Pho85p; dephosphorylates phosphotyrosyl peptides 1.11917193584979 2063.97351074219 2119.37622070313 PHO8 6470 // protein amino acid dephosphorylation // inferred from direct assay /// 16576 // histone dephosphorylation // inferred from direct assay 329 // vacuolar membrane (sensu Fungi) // inferred from direct assay 4035 // alkaline phosphatase activity // inferred from direct assay /// 4035 // alkaline phosphatase activity // inferred from sequence similarity 2135.36010742188 2160.34008789063 1967.60693359375 2103.39233398438 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR481C /GEN=PHO8 /DB_XREF=GI:6320689 /SEG=NC_001136:-1418538,1420238 /DEF=Repressible alkaline phosphatase, a glycoprotein localized to the vacuole; regulated by levels of inorganic phosphate and by a system consisting of Pho4p, Pho9p, Pho80p, Pho81p and Pho85p; dephosphorylates phosphotyrosyl peptides /NOTE=Pho8p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 9412470]; go_function: alkaline phosphatase activity [goid GO:0004035] [evidence IDA,ISS] [pmid 9412470]; go_process: histone dephosphorylation [goid GO:0016576] [evidence IDA] [pmid 9412470]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence IDA] [pmid 9412470] --- --- --- --- --- S0002889 // span:34-53 // numtm:1 S0002889 // PHO8 SGDID:S0002889, Chr IV from 1420240-1418540, reverse complement, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023418 // cdna:GeneFinder chromosome:SGD1:IV:1418540:1420237:-1 // ensembl // 11 // --- /// GENSCAN00000025476 // cdna:Genscan chromosome:SGD1:IV:1418540:1420240:-1 // ensembl // 11 // --- /// YDR481C // cdna:known chromosome:SGD1:IV:1418540:1420240:-1 gene:YDR481C // ensembl // 11 // --- --- No cerevisiae_gene 1.0122041723285 1.01169825191635 -1.11917193584979 -1.08525746223192 -1.01519819813023 Max fold change below threshold 4 1.11917193584979 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777094_at YDR427W.S1 Non-ATPase regulatory subunit of the 26S proteasome, has similarity to putative proteasomal subunits in other species; null mutant is temperature sensitive and exhibits cell cycle and proteasome assembly defects 1.11837324779818 2669.74340820313 2486.87414550781 RPN9 6511 // ubiquitin-dependent protein catabolism // traceable author statement 8541 // proteasome regulatory particle, lid subcomplex (sensu Eukaryota) // inferred from direct assay /// 8541 // proteasome regulatory particle, lid subcomplex (sensu Eukaryota) // inferred from physical interaction 5198 // structural molecule activity // inferred from mutant phenotype 2594.40258789063 2743.3603515625 2596.12646484375 2379.345703125 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDR427W /GEN=RPN9 /DB_XREF=GI:6320635 /SEG=NC_001136:+1322193,1323374 /DEF=Regulatory Particle Non-ATPase /NOTE=Rpn9p; go_component: proteasome regulatory particle (sensu Eukarya) [goid GO:0005838] [evidence TAS] [pmid 9697412]; go_component: proteasome regulatory particle, lid subcomplex (sensu Eukarya) [goid GO:0008541] [evidence IDA] [pmid 11742986]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 9697412]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 9697412] --- --- --- --- scop // a.4.3.ARID domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; ARID-like; ARID domain // 2.5 --- S0002835 // RPN9 SGDID:S0002835, Chr IV from 1322195-1323376, Verified ORF // sgd // 11 // --- /// GENSCAN00000025437 // cdna:Genscan chromosome:SGD1:IV:1322240:1323376:1 // ensembl // 11 // --- /// YDR427W // cdna:known chromosome:SGD1:IV:1322195:1323376:1 gene:YDR427W // ensembl // 11 // --- --- No cerevisiae_gene -1.09508307306233 1.05741505361085 -1.11837324779818 1.00066446008078 -1.09038488374479 Max fold change below threshold 4 1.11837324779818 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771079_at YOL068C.S1 NAD(+)-dependent histone deacetylase; essential subunit of the Sum1p/Rfm1p/Hst1p complex required for ORC-dependent silencing at HMR and for mitotic repression of mid-sporulation genes; non-essential subunit of the Set3C deacetylase complex 1.11760813194428 1033.17517089844 1068.62060546875 HST1 6342 // chromatin silencing // inferred from mutant phenotype /// 6342 // chromatin silencing // inferred from genetic interaction 118 // histone deacetylase complex // inferred from direct assay /// 118 // histone deacetylase complex // inferred from physical interaction /// 5634 // nucleus // traceable author statement 17136 // NAD-dependent histone deacetylase activity // inferred from direct assay /// 45129 // NAD-independent histone deacetylase activity // inferred from direct assay 1040.17236328125 978.4951171875 1087.85522460938 1097.06884765625 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YOL068C /GEN=HST1 /DB_XREF=GI:6324504 /SEG=NC_001147:-200367,201878 /DEF=Homolog of SIR2 /NOTE=Hst1p; go_component: histone deacetylase complex [goid GO:0000118] [evidence IDA,IPI] [pmid 11711434]; go_component: nucleus [goid GO:0005634] [evidence TAS] [pmid 11226170]; go_function: NAD-dependent histone deacetylase activity [goid GO:0017136] [evidence IDA] [pmid 11711434]; go_function: NAD-independent histone deacetylase activity [goid GO:0045129] [evidence IDA] [pmid 11711434]; go_process: chromatin silencing [goid GO:0006342] [evidence IGI,IMP] [pmid 11313477] --- --- --- --- --- --- S0005429 // HST1 SGDID:S0005429, Chr XV from 201878-200367, reverse complement, Verified ORF // sgd // 10 // --- /// GENSCAN00000017412 // cdna:Genscan chromosome:SGD1:XV:200367:201794:-1 // ensembl // 10 // --- /// YOL068C // cdna:known chromosome:SGD1:XV:200367:201878:-1 gene:YOL068C // ensembl // 10 // --- --- No cerevisiae_gene -1.11760813194428 -1.06303275817158 -1.0829412040191 1.04584130766338 1.05469909255762 Max fold change below threshold 4 1.11760813194428 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773311_at YPR103W.S1 20S proteasome beta-type subunit, responsible for the chymotryptic activity of the proteasome 1.11604752734375 2793.18872070313 2661.54138183594 PRE2 6511 // ubiquitin-dependent protein catabolism // traceable author statement 19774 // proteasome core complex, beta-subunit complex (sensu Eukaryota) // traceable author statement /// 19774 // proteasome core complex, beta-subunit complex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement 2717.16528320313 2632.59106445313 2953.78637695313 2605.91748046875 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR103W /GEN=PRE2 /DB_XREF=GI:6325360 /SEG=NC_001148:+732345,733208 /DEF=20S proteasome beta-type subunit, responsible for the chymotryptic activity of the proteasome /NOTE=Pre2p; go_component: proteasome core complex (sensu Eukarya) [goid GO:0005839] [evidence TAS] [pmid 10872471]; go_component: proteasome core complex, beta-subunit complex (sensu Eukarya) [goid GO:0019774] [evidence TAS] [pmid 10500111]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 10872471]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10872471] --- --- --- --- --- --- S0006307 // PRE2 SGDID:S0006307, Chr XVI from 732347-733210, Verified ORF // sgd // 11 // --- /// GENEFINDER00000020738 // cdna:GeneFinder chromosome:SGD1:XVI:732347:733210:1 // ensembl // 11 // --- /// YPR103W // cdna:known chromosome:SGD1:XVI:732347:733210:1 gene:YPR103W // ensembl // 11 // --- --- No cerevisiae_gene 1.05842000756727 -1.03212584737978 1.11604752734375 1.08708380576358 -1.04269045492352 Max fold change below threshold 4 1.11604752734375 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1777918_at YIL122W.S1 Putative transcriptional activator that promotes recovery from pheromone induced arrest; inhibits both alpha-factor induced G1 arrest and repression of CLN1 and CLN2 via SCB/MCB promoter elements; potential Cdc28p substrate; SBF regulated 1.11469399565186 517.077423095703 529.877410888672 POG1 83 // G1/S-specific transcription in mitotic cell cycle // inferred from physical interaction /// 321 // re-entry into mitotic cell cycle after pheromone arrest // inferred from genetic interaction /// 321 // re-entry into mitotic cell cycle after pheromone arrest // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay 3704 // specific RNA polymerase II transcription factor activity // inferred from sequence similarity 507.524047851563 468.420837402344 565.734008789063 552.230773925781 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL122W /GEN=POG1 /DB_XREF=GI:6322069 /SEG=NC_001141:+130607,131662 /DEF=Promoter of Growth; weak similarity to human transcription adaptor protein p300 /NOTE=Pog1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11914276]; go_function: specific RNA polymerase II transcription factor activity [goid GO:0003704] [evidence ISS] [pmid 9927449]; go_process: re-entry into mitotic cell cycle after pheromone arrest [goid GO:0000321] [evidence IGI,IMP] [pmid 9927449] --- --- --- --- --- --- S0001384 // POG1 SGDID:S0001384, Chr IX from 130607-131662, Verified ORF // sgd // 11 // --- /// GENSCAN00000016384 // cdna:Genscan chromosome:SGD1:IX:130607:131662:1 // ensembl // 11 // --- /// GENEFINDER00000019103 // cdna:GeneFinder chromosome:SGD1:IX:130607:131662:1 // ensembl // 11 // --- /// YIL122W // cdna:known chromosome:SGD1:IX:130607:131662:1 gene:YIL122W // ensembl // 11 // --- --- No cerevisiae_gene 1.10206506724854 -1.08347880223704 1.00420443150761 1.11469399565186 1.08808789704344 Max fold change below threshold 4 1.11469399565186 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774651_at YGL203C.S1 Protease involved in the processing of killer toxin and alpha factor precursor; cleaves Lys and Arg residues from the C-terminus of peptides and proteins 1.11449320638146 329.322219848633 364.36735534668 KEX1 16485 // protein processing // traceable author statement 5802 // Golgi trans face // inferred from direct assay 4187 // carboxypeptidase D activity // traceable author statement 344.638000488281 320.316864013672 338.327575683594 384.096710205078 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGL203C /GEN=KEX1 /DB_XREF=GI:6321235 /SEG=NC_001139:-112477,114666 /DEF=Killer toxin and alpha factor precursor processing. Kex1p can cleave lys and arg residues from the C-terminus of peptides and proteins. /NOTE=Kex1p; go_component: Golgi trans face [goid GO:0005802] [evidence IDA] [pmid 8308064]; go_function: carboxypeptidase D activity [goid GO:0004187] [evidence TAS] [pmid 8308064]; go_process: protein processing [goid GO:0016485] [evidence TAS] [pmid 8982451] --- --- --- --- --- S0003171 // span:619-637 // numtm:1 S0003171 // KEX1 SGDID:S0003171, Chr VII from 114668-112479, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019196 // cdna:Genscan chromosome:SGD1:VII:112479:114632:-1 // ensembl // 11 // --- /// GENEFINDER00000021529 // cdna:GeneFinder chromosome:SGD1:VII:112479:114518:-1 // ensembl // 11 // --- /// YGL203C // cdna:known chromosome:SGD1:VII:112479:114668:-1 gene:YGL203C // ensembl // 11 // --- --- No cerevisiae_gene 1.07938725051354 -1.0759283672107 -1.07721164378132 -1.01865181929654 1.11449320638146 Max fold change below threshold 4 1.11449320638146 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773552_at YBL041W.S1 20S proteasome beta-type subunit 1.11286377718408 4039.02722167969 3579.85620117188 PRE7 6511 // ubiquitin-dependent protein catabolism // traceable author statement 19774 // proteasome core complex, beta-subunit complex (sensu Eukaryota) // inferred from physical interaction 4175 // endopeptidase activity // traceable author statement 3647.31420898438 4058.9638671875 4019.09057617188 3512.39819335938 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YBL041W /GEN=PRE7 /DB_XREF=GI:6319430 /SEG=NC_001134:+141212,141937 /DEF=20S proteasome beta-type subunit /NOTE=Pre7p; go_component: proteasome core complex (sensu Eukarya) [goid GO:0005839] [evidence TAS] [pmid 10872471]; go_function: endopeptidase activity [goid GO:0004175] [evidence TAS] [pmid 10872471]; go_process: ubiquitin-dependent protein catabolism [goid GO:0006511] [evidence TAS] [pmid 10872471] --- --- --- --- --- --- S0000137 // PRE7 SGDID:S0000137, Chr II from 141250-141975, Verified ORF // sgd // 11 // --- /// GENSCAN00000021105 // cdna:Genscan chromosome:SGD1:II:141250:141975:1 // ensembl // 11 // --- /// GENEFINDER00000022220 // cdna:GeneFinder chromosome:SGD1:II:141250:141975:1 // ensembl // 11 // --- /// YBL041W // cdna:known chromosome:SGD1:II:141250:141975:1 gene:YBL041W // ensembl // 11 // --- --- No cerevisiae_gene -1.01215214085226 1.11286377718408 -1.06333655265375 1.10193154356477 -1.0384113668775 Max fold change below threshold 4 1.11286377718408 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775423_at YMR027W.S1 High level expression reduced Ty3 Transposition 1.10219452985232 2788.42895507813 2622.3984375 --- --- 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay --- 2641.83374023438 2665.04321289063 2911.81469726563 2602.96313476563 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YMR027W /GEN=PEX12 /DB_XREF=GI:6323669 /SEG=NC_001145:+325876,327288 /DEF=High level expression reduced Ty3 Transposition /NOTE=Ymr027wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004629 // YMR027W SGDID:S0004629, Chr XIII from 325876-327288, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018738 // cdna:Genscan chromosome:SGD1:XIII:325876:327288:1 // ensembl // 11 // --- /// GENEFINDER00000021946 // cdna:GeneFinder chromosome:SGD1:XIII:325876:327288:1 // ensembl // 11 // --- /// YMR027W // cdna:known chromosome:SGD1:XIII:325876:327288:1 gene:YMR027W // ensembl // 11 // --- --- No cerevisiae_gene -1.0340426223195 1.00878536461352 1.00408087976741 1.10219452985232 -1.01493321397817 Max fold change below threshold 4 1.10219452985232 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1775441_at YKL109W.S1 Subunit of the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex, a transcriptional activator and global regulator of respiratory gene expression; provides the principal activation function of the complex 1.09980767039907 1210.02575683594 1317.3408203125 HAP4 6109 // regulation of carbohydrate metabolism // traceable author statement /// 6350 // transcription // traceable author statement 16602 // CCAAT-binding factor complex // traceable author statement 16563 // transcriptional activator activity // traceable author statement 1254.72521972656 1270.95251464844 1149.09899902344 1379.95642089844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL109W /GEN=HAP4 /DB_XREF=GI:6322740 /SEG=NC_001143:+231873,233537 /DEF=Subunit of the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex, a transcriptional activator and global regulator of respiratory gene expression; provides the principal activation function of the complex /NOTE=Hap4p; go_component: CCAAT-binding factor complex [goid GO:0016602] [evidence TAS] [pmid 9618445]; go_function: transcriptional activator activity [goid GO:0016563] [evidence TAS] [pmid 9618445]; go_process: regulation of carbohydrate metabolism [goid GO:0006109] [evidence TAS] [pmid 9618445]; go_process: transcription [goid GO:0006350] [evidence TAS] [pmid 9618445] --- --- --- --- --- --- S0001592 // HAP4 SGDID:S0001592, Chr XI from 231873-233537, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023091 // cdna:GeneFinder chromosome:SGD1:XI:231873:233537:1 // ensembl // 11 // --- /// GENSCAN00000018334 // cdna:Genscan chromosome:SGD1:XI:232434:233537:1 // ensembl // 11 // --- /// YKL109W // cdna:known chromosome:SGD1:XI:231873:233537:1 gene:YKL109W // ensembl // 11 // --- --- No cerevisiae_gene -1.07078139356575 1.012932947124 1.07796095793742 -1.09192090567731 1.09980767039907 Max fold change below threshold 4 1.09980767039907 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1774545_at YIL113W.S1 Stress-inducible dual-specificity MAP kinase phosphatase, negatively regulates Slt2p MAP kinase by direct dephosphorylation, diffuse localization under normal conditions shifts to punctate localization after heat shock 1.09648039510482 239.093994140625 233.203628540039 SDP1 196 // MAPKKK cascade during cell wall biogenesis // inferred from genetic interaction /// 196 // MAPKKK cascade during cell wall biogenesis // inferred from mutant phenotype 5634 // nucleus // inferred from direct assay /// 5737 // cytoplasm // inferred from direct assay 17017 // MAP kinase phosphatase activity // inferred from direct assay 238.910095214844 232.699371337891 245.488616943359 227.497161865234 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YIL113W /GEN=SDP1 /DB_XREF=GI:6322078 /SEG=NC_001141:+150556,151185 /DEF=Sdp1p /NOTE=go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11923319]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 11923319]; go_function: MAP kinase phosphatase activity [goid GO:0017017] [evidence IDA] [pmid 12220658]; go_process: MAPKKK cascade during cell wall biogenesis [goid GO:0000196] [evidence IGI,IMP] [pmid 11923319] --- --- --- --- --- --- S0001375 // SDP1 SGDID:S0001375, Chr IX from 150556-151185, Verified ORF // sgd // 10 // --- /// GENSCAN00000016392 // cdna:Genscan chromosome:SGD1:IX:150556:151185:1 // ensembl // 10 // --- /// GENEFINDER00000019044 // cdna:GeneFinder chromosome:SGD1:IX:150556:151185:1 // ensembl // 10 // --- /// YIL113W // cdna:known chromosome:SGD1:IX:150556:151185:1 gene:YIL113W // ensembl // 10 // --- --- No cerevisiae_gene 1.06109816996794 -1.02668990397888 1.09648039510482 1.02753555358387 -1.05016736585211 Max fold change below threshold 4 1.09648039510482 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1779576_at YGR284C.S1 Protein localized to COPII-coated vesicles, involved in vesicle formation and incorporation of specific secretory cargo 1.0947735243467 2477.04296875 2333.87561035156 ERV29 6888 // ER to Golgi transport // inferred from physical interaction 30138 // COPII-coated vesicle // inferred from direct assay --- 2371.8134765625 2466.6015625 2487.484375 2295.93774414063 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YGR284C /GEN=ERV29 /DB_XREF=GI:6321723 /SEG=NC_001139:-1060663,1061595 /DEF=Protein localized to COPII-coated vesicles, involved in vesicle formation and incorporation of specific secretory cargo /NOTE=Erv29p; go_component: COPII-coated vesicle [goid GO:0030138] [evidence IDA] [pmid 11157978]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: ER to Golgi transport [goid GO:0006888] [evidence IPI] [pmid 11157978] --- --- --- --- scop // a.4.5.SCF ubiquitin ligase complex WHB domain // All alpha proteins; DNA/RNA-binding 3-helical bundle; Winged helix DNA-binding domain; SCF ubiquitin ligase complex WHB domain // 6.40000009536743 S0003516 // span:108-130,137-156,161-181,202-221,225-242,247-269,284-303 // numtm:7 S0003516 // ERV29 SGDID:S0003516, Chr VII from 1061596-1060664, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000019560 // cdna:Genscan chromosome:SGD1:VII:1060664:1061596:-1 // ensembl // 11 // --- /// GENEFINDER00000021532 // cdna:GeneFinder chromosome:SGD1:VII:1060664:1061560:-1 // ensembl // 11 // --- /// YGR284C // cdna:known chromosome:SGD1:VII:1060664:1061596:-1 gene:YGR284C // ensembl // 11 // --- --- No cerevisiae_gene -1.00266660171403 1.03996439301579 -1.0947735243467 1.04876896922145 -1.03304781787551 Max fold change below threshold 4 1.0947735243467 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1773837_at YLR193C.S1 Hypothetical protein 1.0943413058518 1184.34997558594 1155.59039306641 --- --- 5739 // mitochondrion // inferred from direct assay --- 1185.97021484375 1096.21105957031 1272.48889160156 1125.21057128906 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR193C /GEN=HCR1 /DB_XREF=GI:6323222 /SEG=NC_001144:-540011,540538 /DEF=Hypothetical ORF /NOTE=Ylr193cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- --- S0004183 // YLR193C SGDID:S0004183, Chr XII from 540538-540011, reverse complement, Uncharacterized ORF // sgd // 11 // --- /// YLR193C // cdna:known chromosome:SGD1:XII:540011:540538:-1 gene:YLR193C // ensembl // 11 // --- --- No cerevisiae_gene -1.0943413058518 -1.08188127139369 1.06347928890302 1.07295181251176 -1.05399846491407 Max fold change below threshold 4 1.0943413058518 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1776769_at YCL005W-A.S1 Vacuolar H+ ATPase subunit e of the V0 (membrane) sector, essential for vacuolar acidification 1.09305461455765 1812.76153564453 1791.91796875 VMA9 32 // cell wall mannoprotein biosynthesis // inferred from mutant phenotype /// 7035 // vacuolar acidification // inferred from mutant phenotype 220 // hydrogen-transporting ATPase V0 domain // inferred from mutant phenotype /// 5774 // vacuolar membrane // inferred from mutant phenotype 42625 // ATPase activity, coupled to transmembrane movement of ions // inferred from mutant phenotype /// 42625 // ATPase activity, coupled to transmembrane movement of ions // inferred from sequence similarity 1836.64904785156 1945.23278808594 1680.29028320313 1747.18688964844 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YCL005W-A /GEN=VMA9 /DB_XREF=GI:41629681 /SEG=NC_001135:+107022,107416 /DEF=Identified based on homology to Ashbya gossypii, subunit e of the Vo (membrane) sector of the vacuolar H+ ATPase, essential for vacuolar acidification /NOTE=Vma9p; go_component: hydrogen-transporting ATPase V0 domain [goid GO:0000220] [evidence IMP] [pmid 14970230]; go_component: vacuolar membrane [goid GO:0005774] [evidence IMP] [pmid 14970230]; go_function: ATPase activity, coupled to transmembrane movement of ions [goid GO:0042625] [evidence IMP,ISS] [pmid 14970230]; go_process: cell wall mannoprotein biosynthesis [goid GO:0000032] [evidence IMP] [pmid 14734024]; go_process: vacuolar acidification [goid GO:0007035] [evidence IMP] [pmid 14970230] --- --- --- --- --- S0028508 // span:5-24,37-59 // numtm:2 S0028508 // VMA9 SGDID:S0028508, Chr III from 107022-107032,107110-107190,107287-107416, intron sequence removed, Verified ORF // sgd // 11 // --- /// YCL005W-A // cdna:known chromosome:SGD1:III:107022:107416:1 gene:YCL005W-A // ensembl // 11 // --- YCL007C // ensembl // 8 // Negative Strand Matching Probes No cerevisiae_gene -1.00776927541396 1.05912057089044 -1.02978427875371 -1.09305461455765 -1.05120354252494 Max fold change below threshold 4 1.09305461455765 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769403_at YKL195W.S1 Essential protein of the mitochondrial intermembrane space, involved in import and assembly of intermembrane space proteins 1.09058206915464 1986.0126953125 1859.13134765625 MIA40 6605 // protein targeting // inferred from physical interaction /// 45041 // mitochondrial intermembrane space protein import // inferred from mutant phenotype 5739 // mitochondrion // inferred from direct assay /// 5743 // mitochondrial inner membrane // inferred from direct assay --- 1880.30749511719 2050.62963867188 1921.39575195313 1837.95520019531 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YKL195W /GEN=YKT6 /DB_XREF=GI:37362671 /SEG=NC_001143:+75826,77037 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Ykl195wp --- --- --- --- --- S0001678 // span:47-66 // numtm:1 S0001678 // FMP15 SGDID:S0001678, Chr XI from 75826-77037, Uncharacterized ORF // sgd // 11 // --- /// GENSCAN00000018271 // cdna:Genscan chromosome:SGD1:XI:75826:77037:1 // ensembl // 11 // --- /// GENEFINDER00000023166 // cdna:GeneFinder chromosome:SGD1:XI:75919:77037:1 // ensembl // 11 // --- /// YKL195W // cdna:known chromosome:SGD1:XI:75826:77037:1 gene:YKL195W // ensembl // 11 // --- --- No cerevisiae_gene -1.03080976713913 1.09058206915464 1.03378178397231 1.0218518816431 -1.02304315954892 Max fold change below threshold 4 1.09058206915464 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771447_at YML105C.S1 Subunit of the signal recognition particle (SRP), involved in protein targeting to the ER; interacts with Srp54p; homolog of mammalian SRP19 1.08920941731956 1341.96252441406 1281.00531005859 SEC65 6617 // SRP-dependent cotranslational protein-membrane targeting, signal sequence recognition // inferred from mutant phenotype /// 45047 // protein-ER targeting // inferred from mutant phenotype 5786 // signal recognition particle (sensu Eukaryota) // inferred from direct assay /// 5786 // signal recognition particle (sensu Eukaryota) // inferred from sequence similarity /// 5786 // signal recognition particle (sensu Eukaryota) // inferred from mutant phenotype --- 1282.43493652344 1287.08483886719 1396.84020996094 1279.57568359375 0.000244141003349796 0.000244141003349796 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YML105C /GEN=SEC65 /DB_XREF=GI:6323531 /SEG=NC_001145:-57866,58687 /DEF=signal recognition particle subunit, homologue of mammalian SRP19 /NOTE=Sec65p; go_component: signal recognition particle [goid GO:0005786] [evidence IDA] [pmid 1313947]; go_component: signal recognition particle [goid GO:0005786] [evidence IMP,ISS] [pmid 1313948]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: SRP-dependent cotranslational membrane targeting, signal sequence recognition [goid GO:0006617] [evidence IMP] [pmid 1313947]; go_process: protein-ER targeting [goid GO:0045047] [evidence IMP] [pmid 1313948] --- --- --- --- --- --- S0004573 // SEC65 SGDID:S0004573, Chr XIII from 58687-57866, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000018629 // cdna:Genscan chromosome:SGD1:XIII:57866:58687:-1 // ensembl // 11 // --- /// GENEFINDER00000021796 // cdna:GeneFinder chromosome:SGD1:XIII:57866:58687:-1 // ensembl // 11 // --- /// YML105C // cdna:known chromosome:SGD1:XIII:57866:58687:-1 gene:YML105C // ensembl // 11 // --- --- No cerevisiae_gene 1.07751377418007 1.0036258387941 1.04068550550667 1.08920941731956 -1.00223453209243 Max fold change below threshold 4 1.08920941731956 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1771211_at YLR037C.S1 Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth /// Hypothetical protein 1.08051391767685 2422.36071777344 2283.31958007813 DAN2 --- 9277 // cell wall (sensu Fungi) // inferred from sequence similarity --- 2371.68188476563 2429.9052734375 2414.81616210938 2194.95727539063 0.00195312988944352 0.00415039015933871 0.00195312988944352 0.00122069998178631 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YLR037C /GEN=DAN2 /DB_XREF=GI:6323066 /SEG=NC_001144:-222686,223060 /DEF=Delayed anaerobic gene /NOTE=Dan2p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence ISS] [pmid 11292809]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- --- --- S0004027 // span:7-29 // numtm:1 S0004027 // DAN2 SGDID:S0004027, Chr XII from 223060-222686, reverse complement, Verified ORF // sgd // 11 // --- /// GENSCAN00000017850 // cdna:Genscan chromosome:SGD1:XII:222686:223060:-1 // ensembl // 11 // --- /// GENEFINDER00000024768 // cdna:GeneFinder chromosome:SGD1:XII:222686:223060:-1 // ensembl // 11 // --- /// YLR037C // cdna:known chromosome:SGD1:XII:222686:223060:-1 gene:YLR037C // ensembl // 11 // --- --- No cerevisiae_gene 1.02997567839691 1.02454940902735 1.07018718277149 1.01818721035937 -1.08051391767685 Max fold change below threshold 4 1.08051391767685 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1778428_at YDL143W.S1 Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo 1.07904103675993 2226.66772460938 2210.78674316406 CCT4 6457 // protein folding // traceable author statement /// 7010 // cytoskeleton organization and biogenesis // traceable author statement 5737 // cytoplasm // traceable author statement /// 5832 // chaperonin-containing T-complex // traceable author statement /// 5832 // chaperonin-containing T-complex // inferred from physical interaction /// 5856 // cytoskeleton // traceable author statement 51082 // unfolded protein binding // traceable author statement 2214.30541992188 2064.00903320313 2389.32641601563 2207.26806640625 0.000244141003349796 0.00122069998178631 0.000244141003349796 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YDL143W /GEN=CCT4 /DB_XREF=GI:6320058 /SEG=NC_001136:+199997,201583 /DEF=Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo /NOTE=Cct4p; go_component: chaperonin-containing T-complex [goid GO:0005832] [evidence TAS] [pmid 12697815]; go_component: cytoplasm [goid GO:0005737] [evidence TAS] [pmid 8771707]; go_component: cytoskeleton [goid GO:0005856] [evidence TAS] [pmid 8771707]; go_function: chaperone activity [goid GO:0003754] [evidence TAS] [pmid 8771707]; go_process: cytoskeleton organization and biogenesis [goid GO:0007010] [evidence TAS] [pmid 8771707]; go_process: protein folding [goid GO:0006457] [evidence TAS] [pmid 8771707] --- --- --- --- --- --- S0002302 // CCT4 SGDID:S0002302, Chr IV from 199997-201583, Verified ORF // sgd // 11 // --- /// GENEFINDER00000023529 // cdna:GeneFinder chromosome:SGD1:IV:199997:201583:1 // ensembl // 11 // --- /// GENSCAN00000024992 // cdna:Genscan chromosome:SGD1:IV:199997:201583:1 // ensembl // 11 // --- /// YDL143W // cdna:known chromosome:SGD1:IV:199997:201583:1 gene:YDL143W // ensembl // 11 // --- --- No cerevisiae_gene 1.05359228075166 -1.07281769813066 -1.02194988388719 1.07904103675993 -1.00318826409113 Max fold change below threshold 4 1.07904103675993 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x
1769601_at YPR106W.S1 Predicted protein kinase, overexpression causes sensitivity to staurosporine, which is a potent inhibitor of protein kinase C 1.06968035449205 1762.82434082031 1786.28308105469 ISR1 --- --- 4672 // protein kinase activity // inferred from sequence similarity 1726.14392089844 1773.6650390625 1751.98364257813 1846.42224121094 0.000732421991415322 0.000732421991415322 0.000732421991415322 0.000244141003349796 P P P P B+K-dmso.CHP JMV-CONTROL.CHP R+M-CONTROL.CHP S+J DMSO.CHP S. cerevisiae YPR106W /GEN=ISR1 /DB_XREF=GI:6325363 /SEG=NC_001148:+740057,741388 /DEF=Inhibition of staurosporine resistance /NOTE=Isr1p; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 9720220]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] --- --- --- ec // A2S7_HUMAN // (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) // 1.0E-27 /// hanks // 2.1.9 // CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DUN1 // 1.0E-30 --- --- S0006310 // ISR1 SGDID:S0006310, Chr XVI from 740059-741390, Verified ORF // sgd // 11 // --- /// GENSCAN00000017262 // cdna:Genscan chromosome:SGD1:XVI:740059:741390:1 // ensembl // 11 // --- /// YPR106W // cdna:known chromosome:SGD1:XVI:740059:741390:1 gene:YPR106W // ensembl // 11 // --- --- No cerevisiae_gene -1.03906040694546 1.02753021783915 1.0181561975114 1.01496962180664 1.06968035449205 Max fold change below threshold 4 1.06968035449205 Max fold change below threshold PPPPPP No 0 0 PPPP 0 4 0 No No 3 < x